ID expr.6.4.exp_090507.CEL expr.6.4.exp_150607.CEL expr.6.5.exp_090507.CEL expr.6.5.exp_150607.CEL expr.6.7.exp_1_040507.CEL expr.6.7.exp_150607.CEL expr.7.2.exp_1_040507.CEL expr.7.2.exp_150607.CEL expr.6.4.3_exp160807.CEL expr.6.4.4_exp160807.CEL expr.6.5.11_exp160807.CEL expr.6.5.2_exp160807.CEL expr.6.5.6_exp160807.CEL expr.6.5.8_exp160807.CEL expr.6.7.19_exp160807.CEL expr.6.7.20_exp160807.CEL expr.6.7.21_exp160807.CEL expr.6.7.22_exp160807.CEL expr.7.2.1_exp160807.CEL se.expr.6.4.exp_090507.CEL se.expr.6.4.exp_150607.CEL se.expr.6.5.exp_090507.CEL se.expr.6.5.exp_150607.CEL se.expr.6.7.exp_1_040507.CEL se.expr.6.7.exp_150607.CEL se.expr.7.2.exp_1_040507.CEL se.expr.7.2.exp_150607.CEL se.expr.6.4.3_exp160807.CEL se.expr.6.4.4_exp160807.CEL se.expr.6.5.11_exp160807.CEL se.expr.6.5.2_exp160807.CEL se.expr.6.5.6_exp160807.CEL se.expr.6.5.8_exp160807.CEL se.expr.6.7.19_exp160807.CEL se.expr.6.7.20_exp160807.CEL se.expr.6.7.21_exp160807.CEL se.expr.6.7.22_exp160807.CEL se.expr.7.2.1_exp160807.CEL Chr ChrList StrandList From.Min From.Max From.Mean start end strand type Note isChr5 isClean IDlist Short.description Currator.summary Description logFC t P.Value adj.P.Val B A M M.se
AT3G16670_at 10.5592155823743 10.5663194161630 2.93150681854914 3.12192027237412 3.20985345791683 3.62953667059365 8.57606225971434 8.59862933945175 7.67007749745681 6.31631910295705 3.97923225148292 10.0217103160498 3.07827138274232 3.68835187027739 9.34211807501798 2.46376205428759 4.12215787619764 3.72948424938252 7.02358307422864 0.384159064341538 0.386027975135638 0.377130827350739 0.375592585059119 0.372940861565905 0.372940861565905 0.378233562229264 0.380939082751446 0.387002380490511 0.378447949821754 0.374305830538303 0.383126345600439 0.379310973539665 0.372940861565905 0.379605380602977 0.380375277751615 0.377296215388253 0.385618678472714 0.37635567815129 3 3 + 5681522 5682038 5681774 5681425 5682337 + gene protein_coding_gene FALSE TRUE AT3G16670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16660.1); similar to Phylloplanin precursor (T-phylloplanin) (GB:Q56S59) -4.1510214466759 -43.9748092279122 1.32308814398461e-13 2.08055610641579e-09 14.5733959594696 12.4273617609641 -4.1510214466759 0.079858871763409
AT4G22950_at 2.45920345738567 2.61900394535838 7.84228524614925 7.94269054760933 8.44520064570552 7.74275804769473 3.52918958090934 3.56295998852205 1.59731747973650 2.61447172935355 4.78593139797608 4.35321549433539 5.3769578295364 7.2244111007292 6.15171783294883 7.02302837633594 7.00092200999315 5.71960503795541 1.43200939477461 0.234229844030811 0.234229844030811 0.234229844030811 0.242109019949675 0.23482734054935 0.242390676166898 0.235670205464483 0.234229844030811 0.256014806361513 0.238900640089532 0.235028439667012 0.235044232277770 0.235210561042042 0.247710555247711 0.244721049069291 0.237670115443658 0.244779367261904 0.239921798443515 0.254129910436157 4 4|0 -|/ 12023979 12027317 12025341.222 12023926 12027432 - gene protein_coding_gene FALSE TRUE AT4G22950.1 AGL19 (AGAMOUS-LIKE 19); transcription factor MADS-box protein AGL19 Identical to Agamous-like MADS-box protein AGL19 (AGL19) [Arabidopsis Thaliana] (GB:O82743); similar to AGL14 (AGAMOUS-LIKE 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G11880.1); similar to MADS-box protein AGL14 (GB:AAC49082.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 4.51192590621696 40.5134718947848 3.21243326257583e-13 5.05123006207423e-09 14.5035030565443 9.43578135054904 4.51192590621696 0.126007500615384
AT3G30720_at 6.9772613746156 7.10099786960797 2.39279582304523 2.26603298179379 2.00885616327064 2.37880092855586 3.12236117938497 3.5304100582992 5.60263104984672 7.1974618662006 2.26041671227633 2.02025710192079 2.34082031592579 2.33268847935289 2.22963782382034 2.34302517458122 2.99946355596859 2.49245392745208 6.08101585571018 0.316530467352288 0.307018572945775 0.275813786382732 0.273287500414197 0.273287500414197 0.276583712879485 0.273386730864242 0.273287500414197 0.300305184767423 0.311657937370532 0.286106776035681 0.281940415312989 0.275745672760992 0.287163157821089 0.283837735685383 0.273287500414197 0.27925352169301 0.278673746650763 0.308710970850319 3 0|3 /|+ 12352085 12352180 12352134.3 12351626 12352205 + gene protein_coding_gene FALSE TRUE AT3G30720.1 unknown protein -3.41874684190873 -33.765805219315 2.29865307923822e-12 3.61417223648626e-08 14.3056356363566 8.05771370248737 -3.41874684190873 0.100124133672810
AT3G46370_at 5.8521054481967 5.42107038547599 1.91726629404478 1.41589241214715 1.42044510283032 1.71940334740554 7.84168937340301 7.23653719677045 7.38025023598448 7.50696807664637 3.74293682073483 3.24601906867432 3.59844913175312 4.14221421283802 3.92943163204712 3.08725687954673 3.85794705030851 3.86003812293951 7.04532723772229 0.226325189084703 0.214414666711775 0.216764945365237 0.219024959883329 0.224227463586694 0.214097193799513 0.227063364120092 0.224542717742454 0.231831902784713 0.217025910540892 0.208570287788836 0.209141378114025 0.220748234554625 0.213921812792618 0.208570287788836 0.210196582873392 0.213115061870667 0.215605296006499 0.218197684308768 3 3 + 17065857 17066462 17066232.091 17062940 17066499 + gene protein_coding_gene FALSE TRUE AT3G46370.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46340.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G46420.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46400.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -4.29870535689185 -33.5728654684769 2.4452079776655e-12 3.8443559824857e-08 14.2983161890038 9.59999376085407 -4.29870535689185 0.163511675421749
AT3G05730_at 10.6756367675512 10.5722561031340 4.45616315723792 4.55960712907676 5.82492340837975 5.97057136186083 9.79758620684767 10.0117945773261 7.21501871446633 8.77886736907171 7.91152549913421 10.6248148678154 7.83964605506799 8.46470762149685 10.4124178563509 4.2642676531655 7.52637277465538 7.01241801103469 9.11876144142028 0.196257732356933 0.19656545468432 0.196870151794635 0.20363090894108 0.198872380414233 0.204995530593925 0.199724851447661 0.196361928331462 0.203011065730499 0.20034692226013 0.194894956336762 0.198132007117549 0.19528938346363 0.199610933596376 0.198406180666602 0.199078928012463 0.208820058606045 0.199509593600014 0.194894956336762 3 3|0 +|/ 1696076 1696467 1696346.7 1695982 1696714 + gene protein_coding_gene FALSE TRUE AT3G05730.1 Encodes a defensin-like (DEFL) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05727.1) -2.71268168277762 -31.2396217813323 5.3147065599136e-12 8.35525018284017e-08 14.1998265382559 15.9225192392565 -2.71268168277762 0.0514780962811783
AT1G52890_at 8.53188540137141 8.90103059778221 10.2325528146647 10.3922451297885 10.2459269154277 9.69333875453285 4.68786479699512 4.56728858899541 3.93383516363563 3.70796169572664 6.39360731846366 5.91462949893881 7.02280051455934 6.0622142384622 5.826486715235 7.65384431677273 8.37714758077001 7.19140965376104 2.80146563475750 0.281880395728497 0.279228866231669 0.278463658430478 0.283622372857203 0.283535042279071 0.28328367448374 0.277522955404944 0.276346989412189 0.282972389495321 0.279101157966281 0.276346989412189 0.280368697801529 0.281601687310387 0.284413485383986 0.276346989412189 0.279939370029737 0.276346989412189 0.276593999030841 0.284576728154718 1 1 - 19700989 19701580 19701195.727 19700672 19702150 - gene protein_coding_gene FALSE TRUE AT1G52890.1 ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-containing protein 19 (ANAC019) (ANAC) (Abscicic-acid- responsive NAC) (ANAC) [Arabidopsis Thaliana] (GB:Q9C932); similar to ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15500.1); similar to NAC-domain protein 485 [Brassica napus] (GB:AAP35056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 3.39658926944891 31.1774170017556 5.43003190777423e-12 8.5360101590211e-08 14.1969236393231 13.5496941137749 3.39658926944891 0.120103191893493
AT2G21650_at 8.58394661310563 8.75838336891464 3.74536061060993 4.01880298415324 3.47117696585657 3.24578434519067 6.59790095022831 6.77200136517199 4.49653801548407 4.7984313892319 3.94056289815735 4.03230220619654 3.60060531095117 3.09495486507761 3.32310104789528 4.77680799399844 2.78583532394799 3.20010516482321 6.40920603155337 0.284176813674068 0.283114132632110 0.272152583712740 0.267779679871143 0.268190727638008 0.27651040099656 0.278580182284626 0.276877320392836 0.277905678435261 0.273023945093634 0.272967982788103 0.267655025716005 0.269055229615359 0.285639651446897 0.267655025716005 0.267655025716005 0.289616772685116 0.272518060312659 0.272638869253992 2 2 + 9266736 9266987 9266845.182 9266663 9267736 + gene protein_coding_gene FALSE TRUE AT2G21650.1 MEE3 (maternal effect embryo arrest 3); DNA binding / transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G39250.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -2.84910882097235 -30.6920120024413 6.42962529673455e-12 1.01067280039370e-07 14.1737219658054 10.0636743988059 -2.84910882097235 0.074697036797757
AT1G18710_at 3.07354200802156 3.36244754187485 6.91973514228012 7.08286967649856 8.35587903646696 7.7024134327434 3.33321953215006 3.09230906644609 1.43258105594491 2.10929856280942 2.78171979293451 4.41623127447734 6.80165751390414 5.1106586086778 2.84336569123055 5.45788247696657 5.71633075761514 3.42944405959821 2.35440758953278 0.305516768934156 0.295722920908735 0.309571797439830 0.323840373172399 0.306987260860454 0.317598864610706 0.296719534689781 0.295722920908735 0.328178312061473 0.300468914516582 0.308555927216928 0.295722920908735 0.30017735834656 0.303259888447282 0.299166974251848 0.299159766566359 0.319136987299036 0.307960019563624 0.29668278804255 1 1|0 +|/ 6452172 6452929 6452621.2 6450586 6453106 + gene protein_coding_gene FALSE TRUE AT1G18710.1 AtMYB47 (myb domain protein 47); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB95 (myb domain protein 95), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74430.1); similar to MYB transcription factor MIXTA-like 2 [Antirrhinum majus] (GB:AAV70655.1); similar to protein 1 [Petunia x hybrida] (GB:CAA78386.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 3.45203849368530 30.1398970028877 7.81714251771866e-12 1.22869846093502e-07 14.1460969763317 8.63284710023748 3.45203849368530 0.133502945134044
AT3G23880_at 6.134290892215 6.35439358294645 1.89019843891709 1.80184300500628 2.95015195700558 2.51606549981527 6.64341157503858 7.20805882327944 5.84857077666394 6.02495474186639 3.08613073779153 4.187995415406 4.13318701569483 4.303115636994 3.44094828183205 5.32306709417577 3.06744862258321 2.97532815876326 7.09325091620445 0.236253354575289 0.235085348514399 0.232399710966792 0.244565594990984 0.236040230111197 0.246287314653639 0.238927255133778 0.230912443718473 0.247184300368015 0.234538412373321 0.238039642433765 0.230912443718473 0.230912443718473 0.230912443718473 0.233651054791604 0.236463631024959 0.242248112688815 0.237356162387284 0.232689636015568 3 3 - 8622096 8622549 8622306.091 8621995 8623169 - gene protein_coding_gene FALSE TRUE AT3G23880.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE90596.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE77917.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -3.4015400921785 -30.1011348530483 7.92616201444178e-12 1.24575488380981e-07 14.1441060846446 9.50575743776963 -3.4015400921785 0.129907405034099
AT1G11210_at 8.72462994874146 8.93424365536814 9.73669510659433 9.66118977884786 10.4558892793904 10.0097215717738 6.48881003879863 6.18595784311498 3.41552123295832 3.06398943541259 5.89468020734034 5.29158657219979 7.3407926529961 6.43121520704152 5.54496317129237 6.19050217678969 8.01289484747023 5.98454707854192 3.34202955153765 0.330336864818349 0.331915799132013 0.338939981265657 0.331299708142841 0.340698809291498 0.336349891779220 0.319201322439159 0.32030519324135 0.342421362428377 0.340670130599120 0.319201322439159 0.328325443238674 0.319995934904121 0.321915939392618 0.322342205434972 0.319201322439159 0.319704105823825 0.333960035229001 0.342532783410660 1 1 - 3755883 3756559 3756193.182 3755677 3756998 - gene protein_coding_gene FALSE TRUE AT1G11210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11220.1); similar to fiber expressed protein [Gossypium hirsutum] (GB:AAY85179.1); similar to cotton fiber expressed protein 1 [Gossypium hirsutum] (GB:AAC33276.1); contains InterPro domain Protein of unknown function DUF761, plant; (InterPro:IPR008480) 2.72250728094263 26.8076241552320 2.75369120614187e-11 4.32770109957257e-07 13.9461053852538 13.5797643924179 2.72250728094263 0.100970246457405
AT4G16146_at 9.83165914138968 10.0930207269445 10.1646635065586 10.2022718946112 10.8974168643468 10.4420259137412 8.12741871293888 7.91485438797016 5.43974256318317 6.78531952688068 9.8739138448494 10.1745291618158 10.1992453770048 10.0857359218817 10.0468436432097 9.48359566594595 10.0459275860392 9.88895414959138 5.84449787154115 0.155394203765553 0.155591171483819 0.154645957772833 0.155324315966211 0.158269942298631 0.158725509277402 0.167300806268138 0.167622762621167 0.182073847085472 0.176846819453096 0.155102317570507 0.152429587181978 0.149924811704046 0.159795992266773 0.149924811704046 0.155851319027595 0.157455057744651 0.154347309388229 0.183926420142655 4 4|0 -|/ 9142852 9144325 9143224.857 9142418 9144592 - gene protein_coding_gene FALSE TRUE AT4G16146.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69510.2); similar to negatively light-regulated protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97694.2); contains InterPro domain Lg106-like; (InterPro:IPR012482) 2.69325640871378 26.7800682159032 2.78425060116137e-11 4.3754498197251e-07 13.9441733825466 17.7081813048929 2.69325640871378 0.0982439693214116
AT1G56300_at 10.8470758732758 11.0869973973496 10.9697011062395 10.9902399994775 11.6387166944813 11.4309484529756 9.27115149674222 9.22201553033437 7.12155035358173 7.24146155610164 10.2540646805430 10.1137014113155 10.4112549443490 10.4545039565026 9.90558822193879 9.39745078155508 9.76038554818002 9.95265248384898 5.66040860011844 0.148712546983598 0.146787583644921 0.145864574908791 0.147573486247358 0.150440242781457 0.156269683003575 0.143681015779636 0.151403983132381 0.212178874454848 0.212000196316355 0.144994667680393 0.147429512538998 0.143681015779636 0.150574542459927 0.153335785736726 0.143681015779636 0.159652666809887 0.149004931836959 0.252188086620119 1 1|0 -|/ 21082687 21083788 21083307.5 21082485 21084088 - gene protein_coding_gene FALSE TRUE AT1G56300.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14200.1); similar to DnaJ-like protein [Glycine max] (GB:AAM23263.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 2.25365911956494 25.672382811756 4.37983805050284e-11 6.88247751256016e-07 13.8619812341679 19.0349426972577 2.25365911956494 0.0556919294455077
AT2G38530_at 5.26484880596722 4.90345513385774 3.34063067083659 3.31774950452547 10.0316873893068 10.1489293108423 3.55637937257909 3.74258851094774 3.81785269605498 8.71035029894654 8.38701678573212 8.73716346766713 8.13439297771669 8.12544315455156 8.76429331048919 5.26900045019872 4.95712688616463 9.65164003194612 3.95875293374602 0.341350668931756 0.341350668931756 0.344429620808470 0.349536137415103 0.364454683036161 0.369197081741226 0.363182048267178 0.36282266757671 0.363106036321160 0.353857852107229 0.341350668931756 0.343757114512290 0.341762866517848 0.341350668931756 0.346375081879594 0.342541768426488 0.344433646274435 0.362909652460213 0.348218736344351 2 2 + 16135576 16135840 16135686.455 16135456 16136236 + gene protein_coding_gene FALSE TRUE AT2G38530.1 LTP2 (LIPID TRANSFER PROTEIN 2); lipid binding Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region.Expressed in flower, leaves and siliques but absent in roots. Identical to Nonspecific lipid-transfer protein 2 precursor (LTP 2) (LTP2) [Arabidopsis Thaliana] (GB:Q9S7I3); similar to LP1 (nonspecific lipid transfer protein 1) [Arabidopsis thaliana] (TAIR:AT2G38540.1); similar to lipid transfer protein [Brassica rapa subsp. pekinensis] (GB:AAT40130.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 2.30026945992447 24.8873960597552 6.10859610953326e-11 9.5984370669096e-07 13.7979175805961 12.1627393920116 2.30026945992447 0.0733287247957095
AT1G49230_at 8.4228341269705 8.62008575428989 8.29020445903013 8.65550218715003 9.45390088610963 9.31022154171384 5.44177532565055 5.28717430199366 2.93998403183991 2.80318583587553 5.01551171906074 5.45341735361682 5.03229896811766 4.94650183976921 6.05169368278154 5.04629302439744 5.68970873461543 5.48816028961459 2.579193144193 0.227898423708005 0.229578270763767 0.227898423708005 0.228747632387927 0.229059494617182 0.228550019981640 0.231264234599180 0.229882119850689 0.239440972639499 0.23174289864317 0.230881042115283 0.227898423708005 0.235679599497077 0.234570552731783 0.233969588038280 0.227898423708005 0.237168152056932 0.230678985860854 0.227898423708005 1 1 + 18213219 18213588 18213418 18212929 18213796 + gene protein_coding_gene FALSE TRUE AT1G49230.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1L (ATL1L) [Arabidopsis Thaliana] (GB:Q6NQG7;GB:Q9M9C1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49200.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE81190.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 2.27540854440098 24.0465390523162 8.8244257201925e-11 1.38649376915665e-06 13.7232645506062 11.9924969255966 2.27540854440098 0.0805951567744595
AT1G65390_at 5.07231743493853 5.56311916034476 2.55040598195565 2.51822608006681 2.68847164955729 2.65514634135849 4.89908768181382 4.89581787547089 5.04727329245993 5.87934697040412 3.30715249865768 3.67853849104222 2.75349421007093 3.06359437715441 2.8979892515577 3.86953710038732 2.60344214072179 2.69947943793115 4.57786857508867 0.198184358758019 0.197769211439286 0.18774874833066 0.187850400095914 0.189320053168189 0.190009846181737 0.194096994757410 0.192498833824306 0.197564465560318 0.196418541045551 0.187916238920707 0.188657189495970 0.187448737428758 0.188051496598111 0.187943175482115 0.186378027995112 0.190350367602444 0.191365893454186 0.190406068300028 1 1 + 24296340 24298203 24297316.773 24296141 24298294 + gene protein_coding_gene FALSE TRUE AT1G65390.1|AT1G65390.2 ATPP2-A5; transmembrane receptor similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1); similar to Os01g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042077.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08190.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Galactose-binding like; (InterPro:IPR008979)|similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1); similar to TIR; Disease resistance protein [Medicago truncatula] (GB:ABD28631.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -2.28176626622564 -23.7352154951860 1.01438833429600e-10 1.59370551201244e-06 13.693900425435 7.9939822179006 -2.28176626622564 0.0853149220778714
AT2G14610_at 13.2017457055188 13.4669125952117 13.5605801872181 13.5858117177314 11.6680669854711 11.4518758100631 2.77610752599057 2.61339932748172 3.10683873970318 3.15575902838899 2.31436240343767 2.5799308296297 2.35180622067649 2.10752883528651 2.3973182890694 2.22001741342490 3.81435976125653 2.46198672837686 2.19526944091838 0.336616551040939 0.336565257324506 0.335127421285115 0.336712428596635 0.340853911425000 0.342212180360591 0.329617578522766 0.332701193048319 0.325650590936433 0.327285488632780 0.326819038990868 0.325650590936433 0.326022932564223 0.325650590936433 0.335785084460798 0.330969813683123 0.329715049951949 0.329768687148108 0.325650590936433 2 2 - 6249169 6249483 6249335.909 6248786 6249545 - gene protein_coding_gene FALSE TRUE AT2G14610.1 PR1 (PATHOGENESIS-RELATED GENE 1) PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. Identical to Pathogenesis-related protein 1 precursor (PR-1) [Arabidopsis Thaliana] (GB:P33154); similar to ATPRB1 (Arabidopsis thaliana basic pathogenesis-related protein 1) [Arabidopsis thaliana] (TAIR:AT2G14580.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) 2.13183356352239 23.6096338386319 1.07357661622360e-10 1.68658886408728e-06 13.6817762309270 12.9656639217433 2.13183356352239 0.0657067140991357
AT3G55450_at 9.38731559436298 9.35031819823745 8.84823725492147 8.73669437932525 9.22445022926406 9.10372146559085 4.01975913461625 4.00089099191837 3.92319139812911 3.61199976771956 5.3893158530606 6.13109142129424 4.23767500940198 5.4787288770883 5.94504345092272 4.26493244689355 5.49740135410399 5.4047500559147 3.50487142734982 0.197247933176986 0.194669811402604 0.192366053117816 0.193053043094392 0.194049479576590 0.200811935115476 0.200742735626089 0.197687752688263 0.213570936302334 0.195657318803519 0.199382110438244 0.197840008564944 0.192029547935285 0.195389066072080 0.198959404853042 0.193172088802816 0.206881204129697 0.200672092809844 0.199766856763 3 0|3 /|+ 20570544 20570831 20570708.111 20568876 20571189 + gene protein_coding_gene FALSE TRUE AT3G55450.1 protein kinase, putative similar to BIK1 (BOTRYTIS-INDUCED KINASE1), kinase [Arabidopsis thaliana] (TAIR:AT2G39660.1); similar to Os01g0973500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045548.1); similar to protein kinase (GB:AAA18853.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.95115064833858 23.5189031433330 1.11867958959910e-10 1.75733376730122e-06 13.6729143633466 12.3207424925218 1.95115064833858 0.0293387945512947
AT2G21660_at 12.2861779394476 11.9127547931824 11.7855136983266 11.4908611696362 12.4872636003106 12.1831756052807 8.05906003678604 7.64655199470076 7.46480047006452 7.30981731316214 10.5775493560734 10.9416530171660 10.4020177681803 10.769884338854 10.9568375668019 9.87876743658987 10.1499907167450 10.5433249384657 7.77857692767405 0.129663288416150 0.125964753520594 0.125779137486651 0.128939873528976 0.137936597053888 0.130455904488942 0.140113518957085 0.149444593564163 0.149141969251070 0.148665564874642 0.129127044590310 0.128242211479309 0.129250091395346 0.126186452576844 0.128640708726457 0.131569981405891 0.135420685098981 0.129241788350148 0.142918282098697 2 2 - 9272634 9273372 9273027.273 9272329 9273469 - gene protein_coding_gene FALSE TRUE AT2G21660.1|AT2G21660.2 ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding|ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. Identical to Glycine-rich RNA-binding protein 7 (GRP7) [Arabidopsis Thaliana] (GB:Q03250;GB:Q8LEV4;GB:Q94B62); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to Glycine-rich RNA-binding protein GRP1A (GB:P49310); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 7 (GRP7) [Arabidopsis Thaliana] (GB:Q03250;GB:Q8LEV4;GB:Q94B62); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 2.51016944970929 22.9640079426415 1.44371105998441e-10 2.26778133302352e-06 13.6167807223983 20.0040372110387 2.51016944970929 0.121001889102320
AT3G50970_at 8.33798494537858 8.59679175012395 8.76828844035611 8.90847451952392 9.1007399587905 8.82434875845761 4.62438577931385 5.2344172875163 2.94818190483700 3.13545400312913 5.0495279533193 5.62324468873054 5.81301325999037 6.87618454462176 4.52091786362235 7.09719834403775 7.76642355099469 4.99618878147308 3.55758287441541 0.220778907785521 0.219406714988915 0.227346993509899 0.219406714988915 0.221514985174762 0.224197139751497 0.220596188010483 0.233582633311758 0.234874450332224 0.224708527313503 0.223000543832928 0.222878457447201 0.224471538115580 0.231272199804477 0.228823130989173 0.224502434668883 0.229559222912921 0.225536075012065 0.224027950758661 3 3 + 18951866 18952307 18952066.636 18951758 18952535 + gene protein_coding_gene FALSE TRUE AT3G50970.1 LTI30/XERO2 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. Identical to Dehydrin Xero 2 (Low-temperature-induced protein LTI30) (XERO2) [Arabidopsis Thaliana] (GB:P42758;GB:Q41966); similar to dehydrin, putative [Arabidopsis thaliana] (TAIR:AT3G50980.1); similar to dehydrin-/LEA group 2-like protein [Lophopyrum elongatum] (GB:AAC05921.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 2.47808287896021 22.2021762192525 2.06936957018869e-10 3.25035878389537e-06 13.5339235925991 12.3902174136706 2.47808287896021 0.126597930322199
AT2G18050_at 6.52369258952301 6.68595311138523 8.53797837015755 8.10977170331265 10.5108602314286 10.0723740827462 4.42354851721693 3.82113765765007 1.85786723669192 2.60162833851015 3.90111874860277 5.45301513273842 5.70727346265531 3.6679587711738 3.37598425232362 3.96619869835939 5.71266817251546 3.64950058908508 4.43380195135648 0.272634713917919 0.279515930290745 0.276958963088248 0.276647575476284 0.274186479499480 0.27464522032471 0.272336072504579 0.268395842961825 0.281158101209767 0.273358148765349 0.268144505450775 0.273580742325008 0.275837942044556 0.277967368746233 0.274019432676205 0.273851169991051 0.268144505450775 0.273119800926230 0.276492062908654 2 0|2 /|+ 7853193 7853724 7853480.6 7853005 7853966 + gene protein_coding_gene FALSE TRUE AT2G18050.1|AT2G18050.2 HIS1-3 (HISTONE H1-3); DNA binding encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 variant [Lycopersicon chilense] (GB:AAF64525.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Histone H5; (InterPro:IPR005819); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 variant [Lycopersicon chilense] (GB:AAF64525.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818) 2.70447267377317 22.0918594905498 2.18225549719304e-10 3.42745048389140e-06 13.5213319318404 11.0324881515698 2.70447267377317 0.151347001325734
AT4G10500_at 9.54062220946008 9.9603593766677 11.3475186134501 11.4744306036838 9.58310173086407 9.2736732753751 0.822273066126265 0.866554331827794 3.50353694217896 1.25472921808242 1.11833630929077 1.05698609163389 1.71925723076223 1.26860575347084 0.602400318156993 1.73321871381123 1.56312385776158 1.50068777581324 1.48837272509674 0.279141587199640 0.277205485191688 0.272670565457180 0.274606923549818 0.280482463348471 0.279567875144349 0.258425773637652 0.258425773637652 0.270128870183495 0.258595331861026 0.269183007679256 0.259508877513667 0.267336583452226 0.259185821680862 0.261972869601721 0.258425773637652 0.263450223672657 0.271117106689941 0.260260586046855 4 4 + 6491663 6492299 6492040.909 6491013 6492472 + gene protein_coding_gene FALSE TRUE AT4G10500.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10490.1); similar to Os04g0581100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053652.1); similar to H0303A11-B0406H05.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67943.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 2.18017142718718 22.0696543864336 2.20577957651601e-10 3.46417682491840e-06 13.5187784857788 9.55983663499368 2.18017142718718 0.0931916223815415
AT3G56710_at 9.65214276254548 9.99103360907238 10.1523287370652 10.3495483676779 9.77427530294402 9.5254787292510 3.72856021270253 4.02297765994855 7.45010373716645 3.83336813327697 6.79090501046103 7.06243119248259 5.66039039820979 7.46499282574812 5.71019073036298 6.32952180815167 6.99903039784623 7.42998596336268 4.90223331951991 0.259951791841775 0.259951791841775 0.259951791841775 0.259951791841775 0.261595600779352 0.261092378950345 0.266557681064483 0.276999989624917 0.261558199430062 0.266762387543444 0.259951791841775 0.262904828800563 0.263480190630419 0.260897863600161 0.259951791841775 0.267850650664935 0.266888680034625 0.259951791841775 0.271830246260371 3 3 - 21018086 21018460 21018249.727 21017729 21018544 - gene protein_coding_gene FALSE TRUE AT3G56710.1 SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. similar to sigA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G41180.1); similar to VQ [Medicago truncatula] (GB:ABE93011.1); contains InterPro domain VQ; (InterPro:IPR008889) 2.19371260033715 22.0538609642059 2.22267929331445e-10 3.49049556222101e-06 13.5169584537747 14.4376262247255 2.19371260033715 0.0951523655358528
AT1G21520_at 7.81742823179312 8.32619102090833 9.38857268772455 9.31803011918885 9.04920249486727 8.50933481372324 2.76058510226268 3.30890385381184 6.25503278846668 3.78025425050136 7.04365906692799 8.19276761256147 6.43587861237318 6.25135565678089 7.26063077835756 6.43126731033698 5.73393058863901 7.77910791017224 4.50032642841578 0.388791882222519 0.388791882222519 0.388791882222519 0.388791882222519 0.388791882222519 0.388791882222519 0.396157822890775 0.406144149680685 0.388791882222519 0.402297825371389 0.388791882222519 0.388791882222519 0.388791882222519 0.390284750648164 0.397778262727824 0.388791882222519 0.391326583297463 0.388791882222519 0.394030991486826 1 1 - 7534535 7534635 7534582.5 7534522 7534722 - gene protein_coding_gene FALSE TRUE AT1G21520.1 unknown protein 2.77943908978636 21.9808879960673 2.30261783535563e-10 3.61580078685895e-06 13.5085068619709 13.1779206311083 2.77943908978636 0.160103755047947
AT1G66100_at 11.9322649545901 12.1891864579261 8.51425836848633 8.81022244730822 9.10022099036216 8.76317795825268 12.8544687214657 12.9937426316114 13.1418941758578 13.2472172957759 12.6694461712648 13.0707957920504 13.2268889644827 12.8639898001231 12.0258875559937 12.7035204073486 11.6821192901113 12.7464280967167 13.3870310037106 0.0885333221497122 0.0856519230472216 0.106109580453512 0.102718241004893 0.093864031162581 0.104202951655540 0.0883761838239716 0.0862748699228861 0.0932313168276047 0.0873976069949868 0.0873688490499009 0.0856519230472216 0.0864157447019019 0.090899456812524 0.0882960437479943 0.0856519230472216 0.0922677107136773 0.0856519230472216 0.0865344503554723 1 1|0 -|/ 24609552 24610044 24609863.9 24609334 24610200 - gene protein_coding_gene FALSE TRUE AT1G66100.1 thionin, putative Identical to Probable thionin-2.4 precursor [Contains: Probable thionin-2.4; Acidic protein] [Arabidopsis Thaliana] (GB:Q9C8D6); similar to THI2.2 (THIONIN 2.2), toxin receptor binding [Arabidopsis thaliana] (TAIR:AT5G36910.1); similar to thionin (GB:AAC41679.1); contains InterPro domain Thionin; (InterPro:IPR001010) -2.16526269949132 -21.9608195794804 2.32514747926009e-10 3.65094657193419e-06 13.5061703490091 23.5858671503551 -2.16526269949132 0.092644652622384
AT2G40750_at 10.265772142298 10.3263359796739 10.5177237006226 10.5643351434801 8.33517289023288 8.40605509399722 3.46797762138123 3.34645553864742 8.07916722100214 3.35922914231621 6.73321889526472 7.27321079261113 5.0735112148127 7.80024765014484 4.39428579063339 5.29599402889085 5.18204977331085 7.93128154553724 4.1203726802126 0.234310719565489 0.234047189608346 0.236134377497259 0.234682101172942 0.23100017753884 0.23784271987338 0.233091943659463 0.241813162830519 0.239947541050253 0.236428512752881 0.232115770971613 0.232573771135182 0.240097554878581 0.23100017753884 0.237447839285169 0.231229797147676 0.235544609395563 0.232474315610654 0.233441932986226 2 2 - 17007759 17008201 17007981.909 17007532 17009546 - gene protein_coding_gene FALSE TRUE AT2G40750.1 WRKY54 (WRKY DNA-binding protein 54); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 54 (WRKY DNA-binding protein 54) (WRKY54) [Arabidopsis Thaliana] (GB:Q93WU8); similar to WRKY70 (WRKY DNA-binding protein 70), transcription factor [Arabidopsis thaliana] (TAIR:AT3G56400.1); similar to elicitor-induced DNA-binding protein homolog [Matricaria chamomilla] (GB:BAA87069.2); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.81420250007006 21.9227383855206 2.36856245101215e-10 3.71887990433417e-06 13.5017220641787 13.8520941684138 1.81420250007006 0.0277063210420030
AT2G27420_at 2.48813016608019 2.53279289464733 2.42721483806561 2.39341362839611 2.15553210409893 2.32644088248070 9.18452491763379 8.97877108589041 4.21579140160073 5.27655045773951 4.03588460163611 4.24162414965832 5.01356245825813 4.73554103205853 4.26598034107336 6.12605209712156 5.22102872431009 4.67924234912918 5.55771067596803 0.312045941015251 0.28506136595475 0.293059000136137 0.297108774309131 0.28507464972094 0.287143854401290 0.326651870495280 0.328219143761893 0.29183919700897 0.299836333449262 0.285506871545031 0.28506136595475 0.28506136595475 0.290100734268016 0.28506136595475 0.303186939233996 0.2990664940286 0.28506136595475 0.298173201631679 2 2 - 11733560 11733941 11733740.727 11733222 11734692 - gene protein_coding_gene FALSE TRUE AT2G27420.1 cysteine proteinase, putative similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G49340.1); similar to cysteine proteinase precursor [Ipomoea batatas] (GB:AAL14199.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -1.84861205604151 -21.5067230800546 2.90494269580088e-10 4.56076003240738e-06 13.4518534726530 8.96412688845751 -1.84861205604151 0.0472923064949465
AT2G04160_at 6.50158535152148 6.99108843657158 3.69290154980456 3.45283354886109 3.71846999495844 3.60329219157941 6.51071367777368 6.18297997729206 5.37986261978269 5.03994663489338 3.12234339575787 4.12299681952346 3.05859837365167 3.11697100339992 4.42195656006551 3.89462227963318 3.49075256459017 3.51785363357235 5.19377951272319 0.237559615322723 0.227984674888713 0.229435354828018 0.221238786917346 0.221269907014135 0.227605713255323 0.224825441687276 0.246693670965596 0.231348968609307 0.224128349283224 0.222075942937763 0.221260898913694 0.237319297214667 0.225882727786617 0.221238786917346 0.224182998990751 0.230416890235110 0.235964082969425 0.228060800335269 2 2 - 1401610 1402294 1401935 1401273 1407742 - gene protein_coding_gene FALSE TRUE AT2G04160.1 AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59810.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max] (GB:AAQ23176.1); similar to putative subtilisin-like proteinase [Oryza sativa (japonica cultivar-group)] (GB:BAD35630.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -2.27049264992382 -21.4857759209432 2.93524755482635e-10 4.60804513632188e-06 13.4492793565793 9.48062879999896 -2.27049264992382 0.111874348601354
AT1G01060_at 8.4178727449154 8.92046092042225 6.08124149006185 6.52050513152252 4.95395964268952 6.06655698903061 10.2443091039108 10.5178596505997 9.84596700501523 10.0367421409878 6.91338681609888 7.47018407755012 7.07797716856698 7.49164993908654 5.48100632388683 8.30991487761654 6.05815741041896 6.3104467916084 10.0789875176801 0.228197838830086 0.228197838830086 0.232465031412987 0.236592351789317 0.228354423051079 0.237798923066655 0.233815938140536 0.238444524910888 0.233271035889296 0.230040135725645 0.230306019139558 0.236615629364676 0.228329989511684 0.233109897165061 0.241176410309473 0.228197838830086 0.245118484162831 0.240982847919909 0.236286408036206 1 1|0 -|/ 34174 34636 34419 33379 37840 - gene protein_coding_gene FALSE TRUE AT1G01060.1|AT1G01060.2|AT1G01060.3|AT1G01060.4 LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor|LHY (LATE ELONGATED HYPOCOTYL); DNA binding|LHY (LATE ELONGATED HYPOCOTYL) myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -3.35885079362972 -20.8616677704246 4.01697154652994e-10 6.3058419337427e-06 13.3696608996595 16.15350703256 -3.35885079362972 0.229468799178338
AT4G02380_at 11.1568716275963 11.1100394802243 11.9170154186863 11.8886846949143 10.6931140026027 10.2043071040591 3.98438014340497 3.49445955156458 7.94672962244543 5.2420155584746 6.7932572348822 7.86193446743797 5.21255812705832 6.94023979757048 6.34517762541118 7.17845812323658 6.7521897720289 7.07102021082448 4.78494700998709 0.282929296047522 0.282388364527811 0.290645656503882 0.285090753912875 0.281146866687272 0.286285138226696 0.280388679784883 0.276038287954398 0.291880285232875 0.282876786228551 0.276038287954398 0.277202579995273 0.281028920986396 0.276038287954398 0.286074551835337 0.276038287954398 0.287377735989300 0.276038287954398 0.276038287954398 4 4|0 -|/ 1046445 1046783 1046600.889 1046204 1046997 - gene protein_coding_gene FALSE TRUE AT4G02380.1|AT4G02380.2 SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. similar to late embryogenesis abundant 3 family protein / LEA3 family protein [Arabidopsis thaliana] (TAIR:AT1G02820.1); similar to protein induced upon tuberization [Solanum demissum] (GB:CAA66948.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926)|similar to late embryogenesis abundant 3 family protein / LEA3 family protein [Arabidopsis thaliana] (TAIR:AT1G02820.1); similar to late embryogenesis abundant protein 5 [Populus suaveolens] (GB:ABF29697.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) 2.25873314693599 20.7302239683385 4.29626869864216e-10 6.7438529762586e-06 13.3521430670253 15.6864015779359 2.25873314693599 0.120139110758162
AT1G62480_at 8.9150839368791 8.85824246473729 9.99535159322872 9.91437947895866 10.8816631280786 10.8984014767105 9.4337941379844 9.51911973642855 8.61899698834293 7.5685719542062 10.9900311091572 10.5917962411386 10.2637107387146 10.4662986615229 10.7441980414189 10.3373847078316 9.96963734408112 10.7602742716115 8.95103711586676 0.115887870624779 0.111970859006987 0.112049796797491 0.108187133370995 0.113703180777297 0.113475843867527 0.109863512280743 0.107014542352385 0.118534944800504 0.143119082244671 0.107461886486587 0.108888961076025 0.107014542352385 0.108731506284924 0.107714796205071 0.107014542352385 0.11374332617111 0.107598441640681 0.117889859900081 1 0|1 /|+ 23132775 23133176 23132938.2 23132370 23133424 + gene protein_coding_gene FALSE TRUE AT1G62480.1 vacuolar calcium-binding protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12080.2); similar to vacuolar calcium binding protein [Raphanus sativus] (GB:BAA99394.1); contains domain UNCHARACTERIZED (PTHR22683:SF22); contains domain SPORULATION PROTEIN RELATED (PTHR22683) 1.68838494343302 20.5395949404608 4.73962681175305e-10 7.43931824372759e-06 13.3262522432183 19.2494803652456 1.68838494343302 0.0227933859740342
AT4G35060_at 4.80355051602395 5.55317885685263 9.33479294225156 9.30380442813494 9.43449293142483 8.8470410226902 8.50875097672175 7.9981643365683 3.21059850731748 5.32109726082354 8.36392552629638 6.22786130529836 9.21861687612669 8.46920755395312 5.13772126139043 8.39416976024573 9.42227257144294 7.53118226139985 5.60525097485877 0.225134813082691 0.210000692671398 0.203680283334522 0.201046904016077 0.203407817454538 0.20559559842565 0.204907909606307 0.210234924100298 0.223157863455865 0.219058481702837 0.203256550698564 0.209201230812421 0.221725383246170 0.2104896204505 0.210907680851528 0.204290020623247 0.203166884847758 0.207586407573012 0.210942645217862 4 4 - 16685907 16686394 16686061.545 16685725 16686708 - gene protein_coding_gene FALSE TRUE AT4G35060.1 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related similar to ATFP6 (FARNESYLATED PROTEIN 6), metal ion binding [Arabidopsis thaliana] (TAIR:AT4G38580.1); similar to GMFP7 [Glycine max] (GB:AAD09515.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 2.82371285905149 20.2561311872240 5.49378345028645e-10 8.62249312522458e-06 13.2866582133648 14.2519396115931 2.82371285905149 0.187083329354155
AT1G19250_at 1.65610069829597 2.01918188572516 8.95344226941239 8.81938537203884 1.08072864865792 1.45974563160414 0.547937714049028 0.572283048134857 0.650114654322988 0.363376793081364 0.332975274346418 0.611956455512973 0.787023154048739 0.359376361394255 0.723171977630228 0.301173709193759 1.01189861862218 0.868656123574644 0.556231289627096 0.249500794569060 0.256318222658476 0.249398378732036 0.263337368033654 0.236460332861937 0.236460332861937 0.236460332861937 0.236460332861937 0.244796225531191 0.241377766018535 0.247101484243625 0.244920394328025 0.237565152510166 0.241294396587375 0.242124170912952 0.239378912365853 0.236460332861937 0.256360659354032 0.238211028767239 1 1 - 6650676 6651265 6650929.364 6650520 6653069 - gene protein_coding_gene FALSE TRUE AT1G19250.1 FMO1 (FLAVIN-DEPENDENT MONOOXYGENASE 1); monooxygenase FMO1 is required for full expression of TIR-NB-LRR?conditioned resistance to avirulent pathogens and for basal resistance to invasive virulent pathogens. Functions in an EDS1-regulated but SA-independent mechanism that promotes resistance and cell death at pathogen infection sites. Identical to Probable flavin-containing monooxygenase 1 (EC 1.14.13.-) (FMO1) [Arabidopsis Thaliana] (GB:Q9LMA1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT5G45180.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65447.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) 1.99036884541183 20.10239664206 5.95674500924239e-10 9.348515617505e-06 13.2646198079666 3.7124855943069 1.99036884541183 0.0938405998901862
AT4G37370_at 5.74602728088851 6.340118711927 9.34842507729551 9.56940544645534 6.51259401721098 6.4950309226723 2.51260229766523 2.55487237343412 3.70511501157433 3.08943772178817 4.14767296323751 4.13249367329963 3.50295755977454 4.41134307410011 3.18305651654342 3.95524645467861 4.09733253135871 4.28003002416599 3.52363217360994 0.266202226984731 0.263106400270053 0.265368333270025 0.271486610731387 0.275507894804465 0.264630846471621 0.265180107906097 0.274723756561149 0.264691828416479 0.268022746050907 0.264511547579072 0.261703846121357 0.261703846121357 0.263587196796757 0.268777423180261 0.263696552533207 0.267657625081071 0.266916796689637 0.261703846121357 4 4 - 17569982 17570537 17570243.727 17569822 17571698 - gene protein_coding_gene FALSE TRUE AT4G37370.1 CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to Cytochrome P450 81E1 (Isoflavone 2'-hydroxylase) (P450 91A4) (CYP GE-3) (GB:P93147); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 2.10866516529191 20.0940351638306 5.98311610822054e-10 9.3893041086305e-06 13.2634095126249 9.83646530026144 2.10866516529191 0.109977862310734
AT2G36490_at 4.58179620744969 5.42043665208251 6.7418978959396 7.33201191345184 8.02201580505128 7.48300991460951 4.16398181889111 3.95492913860794 4.42163502578409 4.45920166566185 7.23951828161599 7.27068209524571 7.60455263418889 7.71185060876763 6.68755160149375 8.02211835712435 7.0793879823831 7.78679988825733 4.19298323560876 0.224135600032843 0.21970292016072 0.231134969949048 0.219368535098043 0.217780995772179 0.224288655627970 0.221950788203980 0.220041902489001 0.218669267907062 0.222022264323634 0.215235946658035 0.215520959524575 0.222035707628329 0.219928084851100 0.215235946658035 0.218997038451152 0.221211321958319 0.215235946658035 0.216796162161401 2 2|0 -|/ 15316018 15316835 15316467.111 15315100 15321351 - gene protein_coding_gene FALSE TRUE AT2G36490.1 ROS1 (repressor of silencing1) A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. Identical to Protein ROS1 (EC 3.2.2.-) (Repressor of silencing 1) (DEMETER-like protein 1) (ROS1) [Arabidopsis Thaliana] (GB:Q9SJQ6;GB:Q7Y1X6); similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT3G10010.1); similar to DME (DEMETER) [Arabidopsis thaliana] (TAIR:AT5G04560.2); similar to Os01g0217900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042408.1); similar to putative endonuclease III protein [Ipomoea trifida] (GB:AAS79601.1); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 2.96590781672747 20.0773742986315 6.03604256052076e-10 9.47175798596918e-06 13.2609942946464 11.8541337466702 2.96590781672747 0.203718692023200
AT1G59930_at 5.93924971086924 6.0339482242812 3.30105066783612 3.95699471661445 4.40263458706319 3.84261469626542 7.0502940109922 6.34128760967702 5.57420565658844 7.00775428943973 3.24354628561623 2.37453471068504 3.11505291432171 4.29829273975221 2.88166859236379 3.27454466134281 3.61484970102123 2.91490017542489 6.85860214386264 0.582312911610962 0.480452979185415 0.480452979185415 0.480452979185415 0.480452979185415 0.508953429910014 0.480452979185415 0.490364298916732 0.508049320574721 0.529278478665006 0.500375766922311 0.480452979185415 0.480452979185415 0.480452979185415 0.491379095294569 0.480452979185415 0.480452979185415 0.484484365294591 0.492775690477471 1 1 - 22064797 22064828 22064812.333 22064748 22065146 - gene protein_coding_gene FALSE TRUE AT1G59930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59920.1); contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF14) -2.86544243137053 -20.0677573139496 6.06682483084599e-10 9.51945484208044e-06 13.2595979874670 9.95593982088132 -2.86544243137053 0.193909488965696
AT2G16720_at 5.67779642027958 5.75532808971883 7.08696990749664 6.60450975451895 7.70396092058999 7.20532199874008 3.55720032365175 3.73803058402507 2.63119240645414 2.80350403501049 4.74308787732761 4.32325793851357 5.12824702358583 4.30430847625996 4.19897518593538 5.6679055798875 5.25318230780792 4.51426476449943 3.05542893342427 0.271830270768528 0.270719244534506 0.28108201270722 0.278728763947494 0.27930161389446 0.278874359194437 0.267526588333415 0.278821373705337 0.270994180345189 0.277575794888621 0.270902973100944 0.271555670102148 0.272932914518784 0.277060908753332 0.272393382165459 0.267526588333415 0.267526588333415 0.271812149146116 0.273172336422189 2 2|0 -|/ 7262761 7263377 7263063.3 7262616 7263662 - gene protein_coding_gene FALSE TRUE AT2G16720.1 MYB7 (myb domain protein 7); DNA binding / transcription factor Encodes a member of MYB3R- and R2R3- type MYB- encoding genes similar to AtMYB32 (myb domain protein 32), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34990.1); similar to GHMYB9 [Gossypium hirsutum] (GB:AAK19619.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 2.20235682175756 19.8643204707771 6.75976194342715e-10 1.06060664892372e-05 13.2296797594040 9.714487467806 2.20235682175756 0.124805808939719
AT1G55260_at 8.14785788378196 8.43906350882582 3.70564628932188 3.75302808036622 5.37196473414414 4.79146378943074 10.0373477669444 9.94288384112963 8.4823354190885 9.42324143620114 10.0015654424387 10.2269718008407 9.8257837676275 9.48877468294975 9.98824393694043 8.55830289581432 8.22853529525262 9.39879422497156 8.95659764405978 0.206160465555143 0.201478710504177 0.226334125260131 0.229208816241255 0.232659311049981 0.223859554462799 0.202753723314616 0.199273075402836 0.215933230687403 0.203058645379978 0.199273075402836 0.199273075402836 0.199273075402836 0.199273075402836 0.200914738363132 0.199978736756109 0.217986445154871 0.206603092621216 0.204799725087797 1 1|0 +|/ 20618474 20619795 20618897.8 20618416 20620102 + gene protein_coding_gene FALSE TRUE AT1G55260.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid transfer protein-related [Arabidopsis thaliana] (TAIR:AT2G44300.1); similar to Protease inhibitor/seed storage/LTP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94168.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -2.11284959372504 -19.8474951961801 6.82081879542072e-10 1.07011826081356e-05 13.2271724219386 15.9829968228952 -2.11284959372504 0.113868197497863
AT3G45970_at 4.0176602747306 4.80112708393559 6.688136988682 6.71486185072151 7.44618110082355 7.77713274301421 4.61211334442986 4.83575895621973 7.27135742617285 5.07285736623582 10.8828616396344 7.71661808583642 9.61674482569916 10.0015988847901 7.52255993867823 6.7863635762101 6.76241512522844 8.47092675164221 6.37295435518087 0.245049674678563 0.248800826357699 0.242756040802151 0.252794038458569 0.24824032991307 0.251704488390976 0.246445294708511 0.247742210270502 0.261551195148771 0.243670801043226 0.253563166816529 0.242756040802151 0.245383362867121 0.248751728935194 0.242756040802151 0.243200153034186 0.255577874047391 0.246517847709203 0.247275337236483 3 3 + 16907540 16908138 16907941.091 16907151 16908293 + gene protein_coding_gene FALSE TRUE AT3G45970.1 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A1 precursor (AtEXLA1) (AtEXPL1) (At-EXPL1) (Ath- ExpBeta-2.1) (EXLA1) [Arabidopsis Thaliana] (GB:Q9LZT4); similar to ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) [Arabidopsis thaliana] (TAIR:AT4G38400.1); similar to expansin-like protein [Quercus robur] (GB:CAE12163.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) 2.41043398845821 19.6236028033699 7.6931295077067e-10 1.20689815716903e-05 13.1933174829709 13.216155285817 2.41043398845821 0.152256715933243
AT1G22990_at 3.54787355680093 3.5483255914382 5.83087900497427 6.02464487437134 7.05267354744325 7.2080168986093 2.68876955670335 2.41331523886217 2.87639971290903 3.26736526320455 2.86256435338050 2.90280363548891 3.33174730596466 2.962138938152 2.58526048419441 3.03961219304975 3.74513988700301 3.27580355735807 3.09107082074128 0.301582429989608 0.299108955690815 0.322087770148221 0.329457131152245 0.32447844976582 0.313368814858639 0.292386892402195 0.292386892402195 0.292386892402195 0.292386892402195 0.302616777383404 0.296183725445211 0.293853395445061 0.300098614689415 0.296318238617040 0.296522993439428 0.298406898285294 0.298017451887383 0.30784702288706 1 1 + 8139210 8139974 8139686.455 8139154 8140191 + gene protein_coding_gene FALSE TRUE AT1G22990.1 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT1G71050.1); similar to putative farnesylated protein [Brassica rapa subsp. pekinensis] (GB:AAN23108.2); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 1.74466889538534 19.4086792557825 8.64591938302981e-10 1.35628537361589e-05 13.1599410551462 7.87251848028812 1.74466889538534 0.0641825323894157
AT1G07430_at 5.57704110767083 5.22346222958084 7.78740889858507 7.5709927675211 7.84241464221159 7.77520146066738 5.88262359747701 6.28420652558516 3.0924763203916 4.01385457219969 4.75727547785336 3.78623733050997 6.45179716225905 5.12512187297151 4.16318976383394 4.79139937991928 7.47199656036654 5.34861243309404 2.82678070012387 0.239021282782885 0.23998517443993 0.246457848128371 0.24373375084065 0.25088145559713 0.24057140338887 0.238593058781011 0.243723436383608 0.252743166533139 0.243090643969213 0.237958743925208 0.244603859136588 0.237958743925208 0.240195522772758 0.238846307713815 0.23973892362465 0.248087896074469 0.249799325343936 0.255073242225297 1 1|0 -|/ 2281175 2281802 2281481.5 2280832 2282825 - gene protein_coding_gene FALSE TRUE AT1G07430.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G29380.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 1.96404381359854 19.3680816861304 8.83994114439233e-10 1.38663316790938e-05 13.1535375560732 11.0169143762487 1.96404381359854 0.100556587568047
AT3G04070_at 6.86246321446599 7.60667295316454 8.8836019104874 8.73814477313675 8.78700127914214 8.69006279717342 2.25591103553978 2.16294922267654 1.98047377680541 2.52360596592355 2.51511554015962 2.27905491775385 2.90575421838729 2.6876919912124 1.35098823995366 1.74365677237713 3.53697061438005 2.2872747548814 1.66350358006978 0.264336586179734 0.257020994668923 0.259464063074405 0.25459065798903 0.25877380907061 0.269888709726233 0.249197700239399 0.257819831274187 0.258584911654019 0.251273271868477 0.249197700239399 0.251516119500146 0.256029318671759 0.249197700239399 0.266270719138932 0.249197700239399 0.266687465841926 0.257825891667788 0.271576326710992 3 3 - 1061586 1062080 1061851.4 1061533 1063110 - gene protein_coding_gene FALSE TRUE AT3G04070.1 ANAC047 (Arabidopsis NAC domain containing protein 47); transcription factor similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAC domain protein [Cymbidium hybrid cultivar] (GB:BAF36563.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 2.20507792853090 19.2695337353136 9.33093921088392e-10 1.46355781522714e-05 13.1378603257822 8.98293814259219 2.20507792853090 0.133268370978452
AT1G19180_at 9.79771396725 9.99621707052528 9.1557633430242 9.12699711518403 8.79686391925367 8.78060514039655 6.76220179480954 7.03751471696376 5.13494154760211 4.57013143421408 7.55062353123585 7.12691523206326 7.24183232808402 7.23576396656338 7.31853280735823 6.94957605338884 6.47725778798801 6.91211764844833 3.14871103883388 0.215118400927576 0.214597180812152 0.21127172023995 0.209507805814903 0.208246331587223 0.213059291362592 0.215083543365105 0.212998424346294 0.223639908509167 0.22461508618457 0.209524210817559 0.208246331587223 0.221770887876366 0.208246331587223 0.210371910860648 0.212114543785112 0.219047624118142 0.219394283954333 0.224235216993898 1 1 + 6622663 6623232 6622885.818 6622085 6623611 + gene protein_coding_gene FALSE TRUE AT1G19180.1|AT1G19180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); contains InterPro domain ZIM; (InterPro:IPR010399) 1.69181411895934 19.0993306586566 1.02503841055202e-09 1.60767024310980e-05 13.1103327264335 14.3748206798965 1.69181411895934 0.0590145661970273
AT1G64390_at 7.73253395515183 7.74413262111152 2.99910768474332 2.98010205784856 5.34949880473972 5.21992970222513 9.2126263306071 9.35332474908405 8.09739252529257 8.36482413702439 9.81141090247656 10.7624978988076 9.32144863915278 9.36411337993725 10.5437252265792 9.52180384901676 7.81117688592884 9.79704557685312 8.80235600550824 0.191290955963578 0.179278967075559 0.193460067914654 0.187885916684986 0.190233759601853 0.206351867102025 0.176201494762119 0.180840194031523 0.204218195321123 0.187352597792714 0.177156354278619 0.17879652625776 0.182315485867178 0.184103661745857 0.185194532877228 0.177760204401725 0.193007878197679 0.17962752510693 0.186397288982643 1 1|0 +|/ 23917560 23918281 23917857.111 23914782 23918892 + gene protein_coding_gene FALSE TRUE AT1G64390.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT4G11050.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G48930.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G32990.1); similar to cellulase [Fragaria x ananassa] (GB:AAC78298.2); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAB43938.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAC94006.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.58918313968191 -19.0293188075118 1.06568551422267e-09 1.67131459195541e-05 13.0988405866223 15.3429954969151 -1.58918313968191 0.0333236696499155
AT1G33960_at 7.26919165677788 7.49534848964165 9.6278735027124 9.46227839611228 6.2388725343514 6.43305978730153 1.25837242232029 1.36616690636795 1.53518780848981 2.29360803456013 1.5850558184902 1.12488905296807 1.87626743091114 1.63511980204253 1.31806992595106 1.67181230574711 1.86808448897152 1.52430556384775 1.49407836758943 0.26688185329717 0.251139218604400 0.253696080102467 0.249379450180682 0.255906977113041 0.273587080169304 0.246800585152243 0.241161428536661 0.246862506212434 0.246139787094208 0.245328804793580 0.247447054169271 0.244832609497300 0.246128394707754 0.244877220065374 0.244178680069873 0.240786598751929 0.244410623892072 0.242737626315757 1 1|0 +|/ 12347314 12348128 12347625.6 12346212 12348474 + gene protein_coding_gene FALSE TRUE AT1G33960.1 AIG1 (AVRRPT2-INDUCED GENE 1); GTP binding Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 Identical to Protein AIG1 (AIG1) [Arabidopsis Thaliana] (GB:P54120); similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT1G33950.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703) 1.69720516570609 19.0060874370522 1.07955842097387e-09 1.69296351577123e-05 13.0950052125085 7.81876643802949 1.69720516570609 0.061889001201527
AT1G69890_at 7.66821618286848 7.66942830020226 7.63622777946613 7.69895838112063 8.67491687823097 8.75976544375026 5.32986472532583 5.5027983525758 5.2173550268253 4.82656363900922 6.92884793439739 6.88978391608499 6.99952739607214 6.87284829705256 6.49425138841154 6.65032434025673 6.72153756010138 5.8658684390077 5.47024681746329 0.253589668691328 0.253589668691328 0.254173814412298 0.258410411537654 0.265391863734214 0.262383995314597 0.257479604071554 0.275356639197227 0.263894947038239 0.257948208170785 0.26444736960406 0.26138387803507 0.262399924813088 0.253589668691328 0.257720915436626 0.253589668691328 0.254276864098010 0.263186540137979 0.259079667081665 1 1|0 -|/ 26327128 26327906 26327503.3 26326774 26328267 - gene protein_coding_gene FALSE TRUE AT1G69890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27100.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 1.57818769744468 18.8388383964254 1.18543526085573e-09 1.85888103254787e-05 13.0670646559825 13.2921530821204 1.57818769744468 0.0350588060793385
AT2G43570_at 10.0667303396190 9.96312622796976 11.8710298505280 11.9395099836658 10.7309850393324 10.3382324013219 3.26959269658171 3.17363933346471 4.21649536083571 2.87531419624591 1.97037728976031 1.52298902877285 2.15428085207057 2.08383976504363 2.31444610396910 2.12340550510056 3.01195147205136 2.12539641687826 2.78025526883132 0.28147082152065 0.289554955821356 0.285916027836628 0.285098072321969 0.286356354855579 0.281242453423278 0.279943712981766 0.283529975691608 0.286507529556287 0.28633897255253 0.281319436947245 0.28285846193837 0.280535170358147 0.278347756782528 0.280650750404353 0.281248237168857 0.284125440568419 0.289618700872436 0.280283724426453 2 2 - 18083538 18084253 18083811.636 18083301 18084540 - gene protein_coding_gene FALSE TRUE AT2G43570.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43590.1); similar to chitinase class 4-like protein [Brassica napus] (GB:AAK62047.1); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 1.73715734910237 18.8029345659964 1.20960845651958e-09 1.89666605982271e-05 13.0609904431216 11.6461177738155 1.73715734910237 0.0731931264942093
AT4G18970_at 4.74757763109542 5.37333585646004 1.94951738528426 2.00543884379553 2.05046054521002 2.31769552525087 5.56757616996831 5.71294862488816 8.139140843226 6.84320439303591 7.54110084016462 8.76273832268424 6.76950404383561 6.76223347725487 8.61940492790296 7.76015640386641 3.33768180177448 6.77826194300232 8.45960988381988 0.319803751254908 0.324832773125551 0.346580896292077 0.350203205853156 0.34507496614666 0.336889556601854 0.319803751254908 0.319803751254908 0.324449456407177 0.326293276659434 0.319803751254908 0.320790247471946 0.319803751254908 0.322394908258858 0.319803751254908 0.319803751254908 0.32973063739836 0.326687544967996 0.319803751254908 4 4|0 -|/ 10389327 10390073 10389682.1 10389122 10390928 - gene protein_coding_gene FALSE TRUE AT4G18970.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G45670.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -2.02109065784219 -18.5037878648597 1.43321434590871e-09 2.24713677295026e-05 13.0093068145292 11.1432539527881 -2.02109065784219 0.120797640817692
AT2G19930_at 2.38050320477222 2.49926335522148 4.45863707662848 4.17251580066087 6.21170719590299 5.33663588579090 2.6150662217636 2.497288812115 2.29234398819044 3.00993951188693 5.26058004998063 4.91409579761551 5.19622235668415 4.66242682787816 4.07838562764951 5.42994708002508 5.97377739755098 4.73448971398362 3.37354020976927 0.245866577728734 0.247522678049768 0.246188346634612 0.244765658830629 0.248376803983996 0.262059872681156 0.248297999745446 0.252324073744454 0.249247230443641 0.25689966339877 0.253622501242366 0.244765658830629 0.253008512252006 0.256595890098260 0.248839437312111 0.253847418267223 0.278442093428028 0.267036754807448 0.244765658830629 2 2|0 -|/ 8614635 8615342 8614904.5 8614422 8619523 - gene protein_coding_gene FALSE TRUE AT2G19930.1 RNA-dependent RNA polymerase family protein similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19920.1); similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19910.1); similar to Os01g0198000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042304.1); similar to RNA-directed RNA polymerase [Petunia x hybrida] (GB:CAA09896.1); similar to Os01g0197900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042303.1); contains InterPro domain RNA dependent RNA polymerase; (InterPro:IPR007855) 2.34307148054157 18.4057382826276 1.51600638877076e-09 2.37679481631479e-05 12.9919399049201 7.7330431156252 2.34307148054157 0.161932444359041
AT2G15830_at 6.34582586287248 6.48363161349678 6.76860050599569 6.77182235962394 8.22217926854056 7.48295922288688 4.90657923216107 5.02954641395255 5.76368208182631 5.18918197279027 8.03940321143023 7.78934846118226 7.42600542687704 8.0556447010659 7.70784144949756 7.65911237023742 7.6456872992545 7.8637822174423 4.87040364596491 0.273201711413983 0.266493156265520 0.266493156265520 0.276877018224055 0.266493156265520 0.279289429394214 0.278332428973610 0.274882132519808 0.309878434380573 0.267915082185376 0.277377656427941 0.266493156265520 0.266493156265520 0.266493156265520 0.266493156265520 0.266493156265520 0.266493156265520 0.271854348741305 0.277867383512779 2 2 + 6901259 6901335 6901302.875 6901200 6901633 + gene protein_coding_gene FALSE TRUE AT2G15830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33960.1) 2.05946256695198 18.0921822337955 1.81772599730048e-09 2.84964904596796e-05 12.9349332245351 13.0252809144332 2.05946256695198 0.131859024534024
AT3G56370_at 3.37943482101067 3.42119997320550 2.05375149144540 1.96529762118527 2.07582479832403 2.35623582886750 5.54891422521098 5.73973794826997 4.9158618488325 4.70586592260352 4.87998963527635 5.22921368414138 4.16188606370958 4.35288865539678 5.08332513771442 3.59097894372865 2.73409323537575 4.10728227352436 5.49610565602754 0.241817995525436 0.242138755824483 0.252898723606009 0.251121410139833 0.241744274411129 0.250730870434386 0.243018532979324 0.246925857656500 0.253999048724575 0.241744274411129 0.241744274411129 0.241744274411129 0.243910937169432 0.250044448176994 0.247155279827681 0.243977025234885 0.24409720393317 0.241744274411129 0.243705999478529 3 3 - 20910403 20910948 20910724.818 20910078 20913960 - gene protein_coding_gene FALSE TRUE AT3G56370.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G28040.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01367.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB85306.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26311.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.59068245625742 -17.8537231175773 2.09094134229245e-09 3.27775964817764e-05 12.8900295034964 7.97091709482138 -1.59068245625742 0.0610891430700272
AT1G52400_at 11.3428393503437 11.5038784987751 10.0121075814988 9.88336176720376 10.3473785711919 10.3389473337698 9.4243732163854 9.72453233223452 4.90245919616814 8.18299761386261 9.80991967486429 10.7864167515326 10.8267349033691 10.5153871665348 10.5283439657316 11.2954337261599 9.91180283956663 10.3195682906464 7.83431808716856 0.0960226535935102 0.0963020257239852 0.0950143046280818 0.0966019485804862 0.0945005734866114 0.101635518979663 0.0942623005942841 0.0943447766798944 0.144349043500642 0.112581981777922 0.0987255697875473 0.0958958369052049 0.0970013256222562 0.0970858794518212 0.097508137338719 0.0944286136004376 0.0961283153233261 0.0949763438981461 0.119972202530082 1 1|0 +|/ 19520684 19521563 19521270.3 19518820 19521880 + gene protein_coding_gene FALSE TRUE AT1G52400.1|AT1G52400.2 BGL1 (BETA-GLUCOSIDASE HOMOLOG 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 1 Identical to Beta-glucosidase homolog precursor (EC 3.2.1.-) (BG1) [Arabidopsis Thaliana] (GB:Q9SE50); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to ATA27 (Arabidopsis thaliana anther 27), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G75940.1); similar to PYK10 (phosphate starvation-response 3.1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G09260.1); similar to beta-glucosidase [Brassica nigra] (GB:AAB38784.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|Identical to Beta-glucosidase homolog precursor (EC 3.2.1.-) (BG1) [Arabidopsis Thaliana] (GB:Q9SE50); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to ATA27 (Arabidopsis thaliana anther 27), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G75940.1); similar to PYK10 (phosphate starvation-response 3.1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G09260.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 1.58624278985779 17.7051708394793 2.28356589713296e-09 3.57948954375591e-05 12.8613532677283 19.0584069383589 1.58624278985779 0.063034593575683
AT1G55210_at 8.88110641646224 9.03189881593698 10.0614708081645 10.2429510581041 8.77131618375419 8.5733161836302 7.76056534877899 7.91516195729357 5.51363129647231 5.45554556688634 7.08625447562584 8.30062919072312 7.02570682598996 7.63232370735927 8.6132053199114 7.4243867469508 7.42881129577758 7.35852811855193 5.48603285644798 0.179433215223393 0.178404845678055 0.174700858453993 0.17630957763928 0.174700858453993 0.178056224941690 0.174700858453993 0.185659165050306 0.183014341491502 0.188084298942033 0.175065945948745 0.174700858453993 0.180757088460455 0.179553226452844 0.175210417460035 0.174700858453993 0.182446848171352 0.179221707775672 0.183257311901684 1 1 - 20601856 20602190 20602025.455 20601536 20602375 - gene protein_coding_gene FALSE TRUE AT1G55210.1 disease resistance response similar to disease resistance-responsive protein-related / dirigent protein-related [Arabidopsis thaliana] (TAIR:AT5G49040.1); similar to disease resistance-responsive family protein [Arachis hypogaea] (GB:AAZ20288.1); similar to Os12g0174700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066288.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 1.56937061365217 17.6862277496217 2.30948702993728e-09 3.61988997072369e-05 12.857656904439 15.4516236548723 1.56937061365217 0.0596417628671519
AT1G58270_at 7.17238050997467 7.92985011529575 1.12731209954234 1.72920765702943 2.55196819626722 2.14876271965508 6.9360374526056 6.56894697264001 5.02549423877281 5.37022279945979 5.73096080757714 7.42610855100255 6.04323518099098 4.85987690518691 6.22413184457985 2.85236967764124 3.50983888951992 6.13436326660079 4.83425626235997 0.270336242295430 0.260268998886356 0.280572617371642 0.270083584460548 0.268477849474265 0.265734960088548 0.257253431908772 0.263584826472618 0.268886375697188 0.259297750928279 0.258508035053077 0.257253431908772 0.257253431908772 0.265218582268361 0.271150444004624 0.261865873161721 0.257253431908772 0.274758618314992 0.259410044324170 1 1 - 21616082 21616759 21616406.636 21615781 21617782 - gene protein_coding_gene FALSE TRUE AT1G58270.1 ZW9 ZW9 mRNA, complete cds similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28220.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -2.49576911049113 -17.5843867204243 2.45444914794525e-09 3.84685814957459e-05 12.8376288157885 9.73269241900207 -2.49576911049113 0.192189537472483
AT3G02380_at 7.94654308278798 8.12262878402265 7.54319751554318 7.4136227917672 7.50296722670301 6.93366796836307 11.2690145178106 11.1551268668499 10.6472160723365 10.8594338291035 9.11267906087722 9.5664336977250 9.5897682716981 9.38380734965844 9.05972106303457 10.6374714585680 9.66845503112984 9.03073552255896 11.1455935439996 0.188200502804076 0.177398829993930 0.188986751641391 0.198203349050440 0.187873162722318 0.192720546309932 0.170207528134137 0.173132492091624 0.174106074769255 0.173101389424297 0.175686826981208 0.169603552603930 0.170952425170757 0.173115893101114 0.168243634011985 0.172386970416320 0.173268909467830 0.172716924860434 0.173108959252310 3 3|0 -|/ 487446 488103 487759.556 487243 488700 - gene protein_coding_gene FALSE TRUE AT3G02380.1 COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins Identical to Zinc finger protein CONSTANS-LIKE 2 (COL2) [Arabidopsis Thaliana] (GB:Q96502); similar to CO (CONSTANS), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15840.1); similar to Col-2-like protein [Brassica rapa] (GB:AAR90093.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -1.82645582692363 -17.5725150733764 2.47198211193950e-09 3.87409036583159e-05 12.8352769070209 18.680953634424 -1.82645582692363 0.107359161579249
AT3G10450_at 5.12479884967714 6.05515803157224 7.76709951904256 7.43462131382605 8.38242819957655 7.8396654177058 3.95995873627461 4.23119088566079 3.16520559362467 4.27487854556201 5.63778793605616 5.81095107885463 5.454074006187 5.78451074962966 5.70906750664037 6.54113622763582 6.7352152429078 6.31632278271013 4.19707291114541 0.289315323986742 0.281426094538467 0.287702208834894 0.295197254859726 0.289043472368412 0.286572206654533 0.288545136242737 0.288422791744585 0.298698174837387 0.285892887555156 0.284312949502759 0.281426094538467 0.281426094538467 0.292663794344628 0.289559746534385 0.281426094538467 0.281426094538467 0.281426094538467 0.281426094538467 3 3 + 3251438 3252299 3251794.545 3249536 3252511 + gene protein_coding_gene FALSE TRUE AT3G10450.1|AT3G10450.2 SCPL7; serine carboxypeptidase similar to SCPL1 (serine carboxypeptidase-like 1), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G36180.1); similar to SCPL2 (serine carboxypeptidase-like 2), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73300.1); similar to SCPL5 (serine carboxypeptidase-like 5), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73290.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 2.56637891397927 17.5576416365355 2.49414107910457e-09 3.90856848506477e-05 12.8323251980457 11.2882078898862 2.56637891397927 0.200644049108897
AT4G33790_at 3.98670113516405 4.54356761262004 7.30020786512763 7.40033019007499 8.43816016826134 8.44202167411501 7.84437588511962 8.06872742021168 9.61382067756784 7.86500959635783 11.2175043196655 10.5421801467724 10.3411767509925 10.8502734908552 10.7055814351865 10.2673699431730 8.79931245591324 10.4305212817985 8.35910910119223 0.225045998692746 0.240605322750807 0.211119315933136 0.217707693274970 0.199615597345682 0.194259149117117 0.204297044576433 0.208735224852178 0.19865384460658 0.211179670266233 0.206985878881860 0.202900711295714 0.195715543085453 0.201763111000199 0.204884172019072 0.202079194473523 0.217718981430645 0.206527260125982 0.197749908874315 4 4|0 -|/ 16204341 16205172 16204824.6 16204159 16207950 - gene protein_coding_gene FALSE TRUE AT4G33790.1 acyl CoA reductase, putative similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to acyl CoA reductase [Hevea brasiliensis] (GB:AAR88762.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) 1.78296524039392 17.2813057106034 2.94776642882371e-09 4.61914999396676e-05 12.7764338462454 16.5064547120454 1.78296524039392 0.105332344522690
AT1G67980_at 7.47163854972583 7.67187090092649 8.74867894373566 9.31915273830623 9.72907539845025 9.03242291192755 1.76667322024133 1.94551197028868 2.26919529197437 2.06564868037288 1.98279669343428 2.09089789824313 1.90791718646204 1.87955311922314 2.30589062100144 2.18547039254929 2.21364340299531 1.97201022702195 2.14609432066276 0.358380034732623 0.345618626128555 0.347857014367448 0.342191005375234 0.346831887376322 0.358160578327758 0.327315952959038 0.323118967701319 0.329757157371587 0.331675100194351 0.324431141726004 0.326950891943548 0.325906313779479 0.325892121029814 0.321754343393443 0.325361332408468 0.335293518945315 0.321754343393443 0.321754343393443 1 1 + 25491849 25492569 25492270 25491377 25492894 + gene protein_coding_gene FALSE TRUE AT1G67980.1|AT1G67980.2 CCoAMT (caffeoyl-CoA 3-O-methyltransferase); caffeoyl-CoA O-methyltransferase|CCoAMT (caffeoyl-CoA 3-O-methyltransferase) Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase. Identical to Putative caffeoyl-CoA O-methyltransferase At1g67980 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) [Arabidopsis Thaliana] (GB:Q9C9W3;GB:Q39166); similar to caffeoyl-CoA 3-O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G67990.1); similar to S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase (GB:AAA62426.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935)|similar to caffeoyl-CoA 3-O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G24735.1); similar to S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase (GB:AAA62426.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) 2.20018425804450 17.2408942134754 3.02132151053978e-09 4.73410867486477e-05 12.7680900578613 9.07442068267675 2.20018425804450 0.162601533167406
AT2G36220_at 8.30057040192739 8.59095021596044 8.98316921375183 9.32955968823702 9.7385991873780 9.69548944190146 7.43584617769354 7.72613347139037 5.51038261743636 5.57451145860254 7.60643478703829 7.3559903086694 7.79375265962433 8.03576490928463 7.40274912683227 7.57141908006622 7.86042095219808 7.19735913304494 5.78219960418925 0.198033137345395 0.200230998886879 0.202056806287111 0.209401691669513 0.209393413201136 0.207516022435869 0.195325788125409 0.200548983563530 0.249658904414976 0.226922293820973 0.202437172395735 0.197570412254802 0.196017225778106 0.195325788125409 0.204781982163721 0.196647138793644 0.196047262578687 0.207800213928552 0.231043067507388 2 2 + 15199829 15200372 15200043 15199559 15200777 + gene protein_coding_gene FALSE TRUE AT2G36220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52710.1); similar to Os11g0153300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065777.1); similar to calcium/calmodulin protein kinase 1 [Nicotiana tabacum] (GB:AAN71903.1) 1.70197556279643 17.2246592490257 3.05143228582571e-09 4.78098410543172e-05 12.7647255636495 15.3377151896154 1.70197556279643 0.0932621688728528
AT2G18170_at 8.15358297660074 8.09530338589728 8.3029215865676 8.20387533424848 8.59300879830471 8.8119433494329 6.60116181396213 6.12707310457494 4.32719164065092 5.15828351838067 6.5539003633129 6.50083218176796 7.17025660880869 6.73719804848573 6.79892677072587 6.49610762313788 7.92805329056073 6.21493538348411 4.45665872665857 0.209413197382305 0.205375587205661 0.211107755477550 0.208143941328666 0.205340644302792 0.218175746275205 0.215475968927975 0.238834229134219 0.224615761161297 0.211205115195650 0.216969187272320 0.208526999581966 0.211911536718633 0.215320262987776 0.209966628478462 0.205340644302792 0.207610599638082 0.209139602553648 0.229813396370522 2 2 - 7915270 7915761 7915463.091 7914886 7917005 - gene protein_coding_gene FALSE TRUE AT2G18170.1 ATMPK7 (MAP KINASE 7); MAP kinase/ kinase Identical to Mitogen-activated protein kinase 7 (EC 2.7.11.24) (MAP kinase 7) (AtMPK7) (MPK7) [Arabidopsis Thaliana] (GB:Q39027;GB:Q56W33;GB:Q9SI14); similar to ATMPK14 (Arabidopsis thaliana MAP kinase 15), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G36450.1); similar to ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G10210.2); similar to double HA-tagged mitogen activated protein kinase 14 [synthetic construct] (GB:ABG54341.1); similar to double HA-tagged mitogen activated protein kinase 7 [synthetic construct] (GB:ABG54334.1); similar to putative mitogen-activated protein kinase MAPK [Prunus armeniaca] (GB:AAD32204.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 1.69315263438421 17.1793270426093 3.13725296672297e-09 4.91513422296487e-05 12.7552930342434 13.5848109165397 1.69315263438421 0.0925315233113598
AT3G26320_at 6.54671179754513 7.33121079491056 3.58807121662682 3.69105977523791 3.93758007647459 3.80747294136297 3.90549331597528 3.90528443530409 5.72169368568482 4.6580871586109 2.73927370871738 2.47333550418849 3.00097477431366 3.30815356352975 3.2492730034652 3.18657408647925 2.87343395435115 2.65413117226816 5.26819316912596 0.279944464355539 0.282262064216513 0.266925701356142 0.263978953727120 0.262262578343983 0.262262578343983 0.262262578343983 0.272558431830376 0.280650266188212 0.280089507510792 0.265700856802401 0.265796373924834 0.269176489758401 0.262262578343983 0.266440368351529 0.262262578343983 0.272023042008512 0.262262578343983 0.283851980895457 3 3 - 9645622 9646091 9645833.636 9645620 9647301 - gene protein_coding_gene FALSE TRUE AT3G26320.1 CYP71B36 (cytochrome P450, family 71, subfamily B, polypeptide 36); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B36 (EC 1.14.-.-) (CYP71B36) [Arabidopsis Thaliana] (GB:Q9LIP4); similar to CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26300.1); similar to CYP71B9 (cytochrome P450, family 71, subfamily B, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G02580.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -1.97323835020064 -16.8926617617844 3.74470510992201e-09 5.86645502520383e-05 12.6943245284873 8.66492807354035 -1.97323835020064 0.138764940529763
AT3G13065_at 6.2334248598471 5.75336384783954 4.14653538795061 3.92279052741855 4.53869056979346 4.49172260901356 5.80247905049314 5.1591400717136 5.82422495251733 6.56804239416283 3.88002022950038 3.3487675383901 3.85935858404962 3.24697322350272 3.23874301483706 3.5103784966155 4.08045065104476 3.32121178717676 5.97843418095147 0.32042407411891 0.316610195342497 0.315476950706239 0.321530669258506 0.318131597063706 0.318465092270596 0.325926845689662 0.314782392108746 0.332345180939720 0.327894296976114 0.314782392108746 0.322992356033149 0.319099959678421 0.314782392108746 0.319949991240688 0.315700553163963 0.314782392108746 0.316255650866029 0.320101777292882 3 3|0 +|/ 4189819 4190584 4190207.444 4187768 4190870 + gene protein_coding_gene FALSE TRUE AT3G13065.1 leucine-rich repeat transmembrane protein kinase, putative similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G78980.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91085.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -2.01249820958345 -16.867631062088 3.80353273424762e-09 5.9582340281989e-05 12.6888905825279 9.8481709237671 -2.01249820958345 0.144437042418171
AT1G27730_at 7.92779442691327 8.26035222332256 9.15632920994932 9.3196963347755 8.11503263806727 7.85045772431525 3.44969067689893 3.43565950462022 4.93401183833688 3.30020816204101 3.87116805355381 4.38468482102964 3.38897705158025 4.31656752373476 3.54159466639689 4.08060383765589 3.75462716052353 4.12918648401327 2.59042580343097 0.242412440706793 0.226431177737222 0.224868110150787 0.226760535793759 0.231172477256008 0.235614634356924 0.231343999808872 0.227054828969311 0.237335499745318 0.221094909069484 0.220037707331402 0.220037707331402 0.222355078168404 0.231856582474066 0.229977070810658 0.220037707331402 0.232270372709153 0.222003316440207 0.235336048506387 1 1 - 9648309 9648835 9648552.364 9648128 9649060 - gene protein_coding_gene FALSE TRUE AT1G27730.1 STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. similar to C2H2, nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04340.1); similar to zinc finger protein PIF1 [Nicotiana benthamiana] (GB:AAQ54303.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 1.5836078503564 16.8333039997414 3.88585088219479e-09 6.08679682186991e-05 12.6814091054093 10.9601973262314 1.5836078503564 0.078826402064971
AT1G68620_at 7.25181210276057 7.01970356510725 9.8305310083372 9.6845322065752 5.56798325960879 5.87572797642443 2.22593073638370 2.21986560907875 1.64204740260167 1.64658950782947 1.09136632653743 1.21949106879546 2.16148362173797 1.79804466401854 1.52517615387731 2.24923386609389 2.16533357525813 1.80239349277800 1.89781118236808 0.361588120412033 0.383940018867929 0.375575630961198 0.374370266277807 0.376831649162838 0.3631604384586 0.340423611623954 0.341574670298108 0.342047416700258 0.348480658251566 0.346009172308409 0.347752141314842 0.347505519106008 0.356126982641437 0.340423611623954 0.348510931341217 0.346157593394604 0.342677958752927 0.345709643913698 1 1 + 25770113 25770642 25770406.909 25769610 25770903 + gene protein_coding_gene FALSE TRUE AT1G68620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16080.1); similar to CXE carboxylesterase [Actinidia deliciosa] (GB:ABB89015.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 1.54155746230393 16.7829336205640 4.0101735710523e-09 6.28113486433922e-05 12.6703691676841 7.94970149656957 1.54155746230393 0.0713383339206356
AT4G30290_at 2.67274311292083 3.10921336155983 2.81947519860197 2.79385634700838 7.03964510206348 6.61333131209376 5.03240342605562 5.44998688096134 2.89643626138446 3.19676529763388 7.60351626360293 6.62098817468141 5.4321188095769 7.57769336136928 5.74095515291394 5.22382989574987 4.13093537037496 7.38172415719723 3.52695198782686 0.336618038721331 0.315189533356329 0.330456842013155 0.321928053229072 0.322229471574689 0.324398177116237 0.315189533356329 0.323022344391545 0.349107733198016 0.320703533116243 0.318355994210234 0.315189533356329 0.315189533356329 0.319294494080006 0.315189533356329 0.315189533356329 0.320094107180573 0.317221895715281 0.317063023009306 4 4|0 -|/ 14829002 14829711 14829239.667 14828718 14830022 - gene protein_coding_gene FALSE TRUE AT4G30290.1 ATXTH19 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19); hydrolase, acting on glycosyl bonds putative xyloglucan endotransglycosylase/hydrolase, expressed throughout both the main and the lateral root, with intensive expression at the dividing and elongating regions. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 19 precursor (EC 2.4.1.207) (At-XTH19) (XTH-19) (XTH19) [Arabidopsis Thaliana] (GB:Q9M0D1;GB:Q94A49); similar to ATXTH18/XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT4G30280.1); similar to putative xyloglucan endotransglycosylase [Cucumis sativus] (GB:CAD87535.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 1.87887129690120 16.7441708423845 4.10879493446035e-09 6.4351946263518e-05 12.6618228829306 9.151675841224 1.87887129690120 0.128023261614985
AT4G36410_at 6.83970822287315 7.05951519856064 3.59929946329606 3.82993079446539 3.58450669394029 3.69883143494286 4.39253379677176 4.32351064447711 3.52978864253372 2.87381549331156 1.83008521755972 2.45555931786275 2.22588129892962 1.69012984581159 2.19044097332614 4.43731924726522 2.81327517105287 1.65201161006040 3.81280060369307 0.237414471953275 0.232940243627714 0.231977132276159 0.235724055387219 0.238529585980192 0.244014107241516 0.239343883436242 0.236187697068428 0.239329492370560 0.235869831937178 0.251276194349202 0.236970628612057 0.241162118635909 0.232640325533634 0.238039212831028 0.232841904680698 0.236073695295635 0.247317724410589 0.232949546214214 4 0|4 /|+ 17202114 17202860 17202471 17201925 17202991 + gene protein_coding_gene FALSE TRUE AT4G36410.1 UBC17 (UBIQUITIN-CONJUGATING ENZYME 17); ubiquitin-protein ligase ubiquitin-conjugating enzyme similar to UBC16 (ubiquitin-conjugating enzyme 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G75440.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89644.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -1.48465264014438 -16.7249091698395 4.15878042097742e-09 6.51306601729274e-05 12.6575597198961 7.57463257203907 -1.48465264014438 0.0597828750108433
AT2G37950_at 4.66788988658004 4.83089428795888 2.31018298051923 2.43075197028865 2.76982738705414 2.22747418427284 3.97764834362073 4.28070500027279 4.32675886879901 5.0227564769544 3.10749311965112 3.72319205838863 3.29221717821957 3.68079152208964 3.19522413296656 3.41704298861057 3.04745044202907 2.92398591851119 5.16481028126451 0.258449811844153 0.275465891462017 0.253793102976517 0.252496317791633 0.254353882275651 0.259365141756 0.260578648905638 0.267086744541312 0.264306531218510 0.263261428275483 0.255237734969828 0.255561885639854 0.255674316846923 0.255745355610969 0.25741210850887 0.252496317791633 0.271923635869071 0.268597229345628 0.261757107326295 2 2 - 15889624 15890686 15890312.273 15889566 15891057 - gene protein_coding_gene FALSE TRUE AT2G37950.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to zinc finger protein [Brassica rapa] (GB:ABK56014.1); similar to Os05g0452800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055711.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -1.77220456067770 -16.695105455714 4.23743272824412e-09 6.6358196524303e-05 12.6509417177972 7.50518836126971 -1.77220456067770 0.113095909859157
AT2G44080_at 7.07901968584322 7.66871012624583 7.01426139321004 7.03112418723302 7.7948555565047 7.04907795874664 2.9661148857568 3.19733145118262 5.61636770190773 4.80465181797659 7.51866660671552 7.92015785080076 8.07016918151314 7.54357836918665 6.87873438034516 8.54751253064686 7.72074528121278 7.24962048514446 5.5236395019844 0.266383509556806 0.259701007441459 0.267573027416795 0.260341209671119 0.259701007441459 0.278143777818713 0.278061812496205 0.289890597793237 0.278867468768175 0.286811358483167 0.261402549591619 0.259701007441459 0.263065376177976 0.269668913803507 0.261927701454058 0.262479928666914 0.26498006100652 0.268852672158719 0.268794244125297 2 2 + 18244906 18245165 18245049 18244228 18245249 + gene protein_coding_gene FALSE TRUE AT2G44080.1 ARL (ARGOS-LIKE) Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1. similar to (ARGOS), unknown protein [Arabidopsis thaliana] (TAIR:AT3G59900.1); similar to Os11g0247000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067611.1); similar to Os04g0444300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052892.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84385.1) 2.18039874086962 16.6694709620439 4.3063786259207e-09 6.74335829032923e-05 12.645228443625 12.7230791187496 2.18039874086962 0.169351871805377
AT1G04680_at 7.82611221765274 7.86689099044749 4.46234715305103 4.53390341620297 5.46761763752463 5.67704811869893 8.17240956832823 8.45171735078367 9.57686977048674 8.7020417526883 9.92259242645497 10.2172399995576 8.33638858218119 9.3781969757135 9.9418054561083 8.02732527755543 7.1063823469581 9.0160001624176 8.49289205076645 0.213999379611607 0.212923622452976 0.245944772361610 0.237129017762023 0.219936904361839 0.239560441291037 0.209590837706599 0.209590837706599 0.218455102859075 0.209590837706599 0.209590837706599 0.214982371381637 0.214665573747164 0.214456701344083 0.212101266126262 0.21111601025505 0.217781005815425 0.209590837706599 0.214265269696240 1 1|0 -|/ 1304066 1304900 1304487.1 1303528 1307881 - gene protein_coding_gene FALSE TRUE AT1G04680.1 pectate lyase family protein Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13710.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.48737328585623 -16.6475595498776 4.36627954848345e-09 6.83672051701539e-05 12.6403294451667 15.5158437705940 -1.48737328585623 0.0620726528548798
AT4G12970_at 5.58902378407789 5.53666270995512 2.28187050669860 2.74454432115665 3.65168757685038 3.29912318406084 4.95817690895611 4.77163771168485 5.52192380253917 5.75609343405662 4.40900407299755 6.8686550737024 4.58000211529747 4.4263197500858 6.7291595430779 5.00975463392202 2.96412476447800 4.01603681129024 7.02156123458127 0.258626973085521 0.242340401955916 0.261202830084026 0.265281029064954 0.245236740930487 0.242019049337412 0.241388112469918 0.247103244118735 0.242432100373627 0.243315546407916 0.238874591474876 0.246618094350174 0.24059225797471 0.242042146401016 0.243166132574549 0.246320574373472 0.271495343299762 0.238874591474876 0.247927548276188 4 4|0 -|/ 7586264 7586741 7586411.111 7586140 7586846 - gene protein_coding_gene FALSE TRUE AT4G12970.1 similar to Os01g0914400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045180.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75419.1) -1.72202313813140 -16.6439231301520 4.37630817775637e-09 6.85198571391315e-05 12.6395150205129 9.59171163092945 -1.72202313813140 0.106102023600769
AT2G17840_at 10.2694571160370 10.4703998081681 10.0005150444115 10.2252559761971 10.4341534177765 10.2610730605379 8.3439087587902 8.34992413032168 7.20951513554745 6.90602420698552 8.52069227729543 8.76321266746247 9.2751904732375 9.04975829402269 8.54126338794603 10.4493558475836 9.33912813636865 8.99816322135306 6.99618942107351 0.160199807178136 0.161332251706175 0.159587335877653 0.162285851764269 0.160038011997716 0.160364732849245 0.169184192377645 0.167454920714540 0.180677991122619 0.170597548033446 0.160697758287301 0.157964568811426 0.155801293074630 0.157661114117121 0.174981031177484 0.157661654240061 0.165574696454452 0.16009674795303 0.171566366227543 2 2 - 7763017 7764095 7763355 7762687 7764934 - gene protein_coding_gene FALSE TRUE AT2G17840.1 ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G35985.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) 1.47583976917900 16.6077832020459 4.47735022628892e-09 7.00973951427793e-05 12.6313994757292 17.8715051437104 1.47583976917900 0.0601671637723003
AT1G66940_at 7.25764043667215 7.56198510853376 2.02930106889509 1.89893748782764 3.67485952273414 3.00406527580250 4.03718258731735 3.14226812848841 8.6980870600302 5.95635527269681 6.04219611015729 7.63132346561528 4.73556825989944 5.99530375301023 7.06062700753274 5.75156167348567 1.8041503740766 4.78733913220131 7.85341163192038 0.288113351227659 0.280692377887076 0.282210079308753 0.285763592919509 0.272838410632852 0.275955692854943 0.285816337268081 0.285843696367696 0.286919478157051 0.277384842440219 0.274480186793369 0.274191129011476 0.275962264030201 0.282076769690356 0.272838410632852 0.275031438405655 0.287140932792129 0.276085844306872 0.272838410632852 1 1|0 -|/ 24976906 24977914 24977459.222 24976691 24978454 - gene protein_coding_gene FALSE TRUE AT1G66940.1|AT1G66940.2|AT1G66940.3 protein kinase-related similar to kinase [Arabidopsis thaliana] (TAIR:AT1G67000.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78903.1) -2.43729374632827 -16.6054018300329 4.48409681748133e-09 7.01985356776702e-05 12.6308633404302 10.5650933071404 -2.43729374632827 0.201848600301138
AT1G22770_at 9.6901620266563 9.93745423371561 9.78333567727566 9.84355150209686 10.2925245841927 10.0229476720191 7.77268805603437 7.88306352464599 6.4563443154132 6.70504013937186 8.29729118388765 8.22697820727427 8.51218858927142 8.64160169584843 8.13978200545143 7.61375448282818 8.57168940184669 8.49038552284274 6.23880181743993 0.197303590738372 0.202554678712370 0.198013340227402 0.197475300066537 0.202819799335394 0.206331079835943 0.197073235847202 0.195994944624869 0.215122920221543 0.221671582414387 0.203013162530954 0.203689726030858 0.196390007148527 0.195994944624869 0.198784435487938 0.199142420964671 0.207938258573447 0.195994944624869 0.213850901059851 1 1|0 +|/ 8066712 8067406 8067121.3 8061833 8067705 + gene protein_coding_gene FALSE TRUE AT1G22770.1 GI (GIGANTEA) Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Identical to Protein GIGANTEA (GI) [Arabidopsis Thaliana] (GB:Q9SQI2;GB:O64381;GB:O80545;GB:Q9S7N0); similar to (GB:ABE81212.1); similar to (GB:AAT79487.1); similar to (GB:AAW66945.1) 1.50486401369051 16.6048483862384 4.48566634624115e-09 7.02186209840589e-05 12.6307387152421 16.7924347313619 1.50486401369051 0.0669419276491146
AT4G34590_at 3.48470005664375 4.00521483629129 4.96812215572685 5.65932509745586 5.44048433061993 6.01855078926483 3.05541457561681 3.29195033765877 3.29116602732630 3.18212786561081 6.29421735292469 5.74918154339222 5.55734419425745 5.20276876510252 6.01834758724443 6.26064852039805 5.57561042261732 5.59135582327437 3.3770357951594 0.248790544543553 0.242417009816372 0.243833769460900 0.241222814047338 0.246238318504838 0.247126358313869 0.241222814047338 0.251524252165319 0.253794481779782 0.256410618889336 0.24247593621846 0.243881242543671 0.244490794156114 0.249325396602975 0.242390041476822 0.241222814047338 0.248501569003213 0.248579160695392 0.251574398993081 4 4 + 16522457 16522904 16522707.273 16521866 16523235 + gene protein_coding_gene FALSE TRUE AT4G34590.1 GBF6 (G-box binding factor 6); DNA binding / transcription factor Encodes a basic domain leucine zipper (bZip) transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE85416.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 2.28002084425005 16.4961996658289 4.80568697564453e-09 7.52234182297639e-05 12.6060934894649 9.0227840251682 2.28002084425005 0.184675123724816
AT1G17745_at 8.70805785059702 8.59281820856757 10.7212604993273 10.6522016346672 7.57166284835586 7.79741232565946 5.59779623845024 6.34383260092708 3.58401651712485 4.74197970224686 4.99799500383150 7.04040248974466 6.168257509518 6.8980217666899 6.72154138942455 6.39969644409812 6.11129433806432 6.0066321651718 4.70816107262825 0.233246024420128 0.233012358170838 0.239747615219935 0.238914579815567 0.226069985286423 0.226069985286423 0.231212952080192 0.226069985286423 0.231460521205346 0.234700396119627 0.229051572910564 0.226069985286423 0.226069985286423 0.226660442004531 0.226336498246980 0.23063627960868 0.240939980345725 0.227402451621078 0.234726538051976 1 1 + 6104385 6104924 6104585 6100957 6105258 + gene protein_coding_gene FALSE TRUE AT1G17745.1 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase encodes a 3-Phosphoglycerate dehydrogenase Identical to D-3-phosphoglycerate dehydrogenase, chloroplast precursor (EC 1.1.1.95) (3-PGDH) [Arabidopsis Thaliana] (GB:O04130); similar to D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative [Arabidopsis thaliana] (TAIR:AT3G19480.1); similar to EDA9 (embryo sac development arrest 9), NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34200.1); similar to D-isomer specific 2-hydroxyacid dehydrogenase, catalytic re (GB:ABE86334.1); similar to H0212B02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68268.1); similar to putative D-3 [Oryza sativa (japonica cultivar-group)] (GB:BAD37553.1); contains InterPro domain D-3-phosphoglycerate dehydrogenase; (InterPro:IPR006236); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) 1.91163457167576 16.4813180691891 4.85142185408003e-09 7.59344548600607e-05 12.6026898238840 13.5669798936446 1.91163457167576 0.136875450903205
AT4G16260_at 2.55305987097280 2.44423321855319 6.53481931284393 6.70081715623323 3.16201390168688 2.64968726992055 0.547510519430027 0.512738272527989 0.866739706751342 0.229552438838335 0.590656557011947 0.547107941365325 0.809192365874265 0.821019994844901 0.563552604900511 0.478442767003225 1.14968402370972 0.462453569253248 0.859042965776852 0.301494038091855 0.320560994080484 0.361986806367746 0.361831815267462 0.319836868519866 0.328292792324787 0.302905551220577 0.301494038091855 0.303073787028731 0.306690551613459 0.301498488549637 0.301494038091855 0.302065127809919 0.30174933204063 0.307100228521979 0.303189228129029 0.307751616512824 0.307538221939641 0.303268711765579 4 4|0 -|/ 9200396 9200885 9200596.7 9200025 9201568 - gene protein_coding_gene FALSE TRUE AT4G16260.1 glycosyl hydrolase family 17 protein similar to BG1 (BETA-1,3-GLUCANASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57270.1); similar to beta-1,3-glucanase [Hevea brasiliensis] (GB:ABG49448.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 1.63671714867001 16.44729356993 4.95777769419474e-09 7.7594178691842e-05 12.5948822841449 3.80288098949653 1.63671714867001 0.095272244602471
AT1G30530_at 6.15986361820738 6.36486641582059 4.58824704576981 4.64819666729322 4.29032898575541 4.23893163808573 7.25895544937577 7.13104227664687 6.75856332357085 7.46677909010817 6.00927754517482 7.68549572031369 6.2279130029999 6.27285482169555 6.81577925471462 6.99744750160631 5.61978871694884 5.87909620743926 6.63200089492579 0.251868739445915 0.243699854386083 0.267965497948535 0.266877924598490 0.251734432748904 0.247739882461477 0.259509750504072 0.260693748985807 0.252527502461483 0.243699854386083 0.251510512009328 0.249480210885953 0.250261826206162 0.248889304466776 0.247399269213484 0.243699854386083 0.250886800112914 0.243842115252911 0.243699854386083 1 1 + 10815788 10816237 10816009.5 10814641 10816565 + gene protein_coding_gene FALSE TRUE AT1G30530.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin Identical to Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol-3-O- rhamnosyltransferase) (UDP glucose:flavonoid 3-O-glucosyltransferase) (UGT78D1) [Arabidopsis Thaliana] (GB:Q9S9P6;GB:Q8LAI9); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17050.1); similar to UDP-glucose:flavonoid 3-O-glucosyltransferase [Vitis vinifera] (GB:BAB41020.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.40062351447996 -16.4183306120723 5.05031293129464e-09 7.9037397374761e-05 12.5882080443245 12.2805061950676 -1.40062351447996 0.0439925144388230
AT4G36360_at 6.52604285607248 7.01374575166459 2.86225719066045 2.78097691314992 2.84188388420248 3.65819439313253 8.57775624171438 8.74442659892409 6.99318276491164 8.2944418949946 8.47049479126979 9.47177632037072 7.64337935403112 8.17959490116177 8.95908114881193 8.27445572208312 6.87729770226364 8.11716242523992 8.19621478531124 0.216763540529865 0.197405972003787 0.224970544322902 0.218736370918228 0.215413022498933 0.22055502053896 0.198913348432707 0.197407799106165 0.208797179708950 0.20221110250332 0.200841892885635 0.204769369031638 0.201318601089754 0.200762916055718 0.197405972003787 0.197405972003787 0.206422303790415 0.201747527303596 0.197405972003787 4 4 - 17176865 17177483 17177175.727 17176345 17181264 - gene protein_coding_gene FALSE TRUE AT4G36360.1|AT4G36360.2 BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Prunus persica] (GB:AAW47739.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91082.1); similar to putative beta-galactosidase [Lycopersicon esculentum] (GB:AAF70825.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -2.12922797644635 -16.3790232875471 5.17891785642176e-09 8.10448855351441e-05 12.5791083811813 13.4142113673867 -2.12922797644635 0.167657949530812
AT1G14840_at 5.26936010444317 5.1776181494805 3.25547473804704 3.28862266907692 4.52441004990395 4.20138079527006 6.92583307164226 6.76873212158342 6.20952807428223 6.07032052815366 5.65710778128124 6.75471486689514 5.56079971791366 5.39046370749772 6.32011110841786 5.73425005743295 4.61119077172681 4.8216498432808 6.72269405796693 0.255575255464297 0.244715737903008 0.247815092289460 0.260792441794294 0.240328037225315 0.251441245315531 0.245424968216683 0.257666717851791 0.249767689488061 0.247040231692650 0.24454274274984 0.244343869794282 0.241842756143197 0.261626659899587 0.242710805099541 0.246851592183204 0.243012929929388 0.245472732013845 0.241972772731062 1 1|0 -|/ 5112424 5113129 5112852 5112079 5115423 - gene protein_coding_gene FALSE TRUE AT1G14840.1 ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G68060.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) -1.47290435185401 -16.3743566732579 5.19442118427885e-09 8.12823026915955e-05 12.5780248591374 10.8966623967343 -1.47290435185401 0.0644135354755062
AT2G39920_at 10.3759509698576 10.4588584421406 10.6415426664749 10.4120097288754 10.9123389210689 10.7200187013311 8.89395625460639 8.6202496275152 7.93257392632804 8.25472193757582 9.15810296368882 9.26491631529374 8.96035837852879 9.6115697388951 9.2503415988248 8.75352349965026 9.69359046047426 9.3479204530491 5.81910969035754 0.146127593976392 0.141262627022123 0.152474232171409 0.149067219834315 0.146803479302447 0.146233515499171 0.149169816759729 0.149532170029111 0.174530959642115 0.152630979506695 0.145922443620692 0.141866276333558 0.147749858964583 0.143610235336869 0.141262627022123 0.146799905574560 0.150176682952253 0.148375522336741 0.186607119464544 2 2 - 16670310 16670987 16670608.455 16670097 16671616 - gene protein_coding_gene FALSE TRUE AT2G39920.1 acid phosphatase class B family protein Identical to Hypothetical protein At2g39920 [Arabidopsis Thaliana] (GB:O04195); similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G25150.1); similar to HAD superfamily (subfamily IIIB) phosphatase, putative [Medicago truncatula] (GB:ABE88130.1); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519) 1.50189779443556 16.3348846462182 5.32759340937513e-09 8.33608540764926e-05 12.5688327276376 18.4246201360526 1.50189779443556 0.0716582989590389
AT4G30270_at 10.3891906490011 10.8354869320969 12.7989263124889 12.9032706779371 12.2584633829780 12.4382803043756 9.12626136552353 9.43509105574163 10.3820355687985 10.2055306947110 11.7338921400244 9.07288636278855 11.6480039722531 11.6453053474185 9.4759689522055 10.7136637896637 11.5124775202559 11.8875006033994 10.3385915935952 0.101997062174180 0.0995679516269 0.103480189929569 0.102536955926840 0.0995679516269 0.102245224540576 0.106488654194690 0.103792768006133 0.106696465747087 0.0998011274409507 0.101170148854613 0.107366702444624 0.101254956868314 0.0999778767075836 0.103405482735785 0.0995679516269 0.103823063025663 0.0995679516269 0.100462959707333 4 4|0 -|/ 14819470 14820212 14819771.5 14819198 14820598 - gene protein_coding_gene FALSE TRUE AT4G30270.1 MERI5B (MERISTEM-5); hydrolase, acting on glycosyl bonds encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. Identical to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) (XTH24) [Arabidopsis Thaliana] (GB:P24806;GB:O64956;GB:Q39148;GB:Q39149;GB:Q41904;GB:Q8LDQ0); similar to TCH4 (TOUCH 4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G57560.1); similar to putative xyloglucan endotransglycosylase [Cucumis sativus] (GB:CAD87535.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 1.65286035957682 16.2981989505526 5.45470224134932e-09 8.53442712681515e-05 12.5602455204261 21.9080871458692 1.65286035957682 0.100577075147945
AT3G50210_at 6.57457077416821 7.02684938907142 7.3599106130858 7.53004988389689 8.27856124076142 7.71718876475442 3.72541563408828 3.76973007934886 4.08838325335421 3.84313172374972 5.04857094242263 4.70359466085441 5.40831479191498 5.34563805046887 5.27660138383883 5.33229927991636 5.97960344087281 5.54601235851236 4.43223811712072 0.254683816427423 0.24456783657243 0.250222022230124 0.24621525402461 0.246029750406458 0.247377569939610 0.250561815128582 0.254010732554425 0.256949543258871 0.2554134725938 0.244572998396436 0.24518958370249 0.257270025076543 0.247978800268293 0.24646263774514 0.244195562216394 0.257533372346735 0.245737757433322 0.244422163690426 3 3|0 -|/ 18625320 18626219 18625823.667 18625154 18627418 - gene protein_coding_gene FALSE TRUE AT3G50210.1|AT3G50210.2|AT3G50210.3 2-oxoacid-dependent oxidase, putative|oxidoreductase similar to DIN11 (DARK INDUCIBLE 11), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49620.1); similar to putative flavonol synthase-like protein [Euphorbia esula] (GB:AAF34802.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to DIN11 (DARK INDUCIBLE 11), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49620.1); similar to 2-oxoacid-dependent oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G49630.1); similar to putative flavonol synthase-like protein [Euphorbia esula] (GB:AAF34802.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 1.82805724432369 16.2677012485780 5.56288490575204e-09 8.70313343504907e-05 12.5530743471904 11.2234497449011 1.82805724432369 0.128411475001695
AT1G25530_at 2.24724718499894 2.23882026192043 4.95811552060475 5.62575042510496 6.42449270149214 6.15941906540834 2.4243837413419 2.89307927963690 3.50265908622844 4.0073656980242 3.21685874878727 3.14850950366251 4.40082143089387 4.12398193382692 4.32914507611594 4.80591400056980 5.84035759342622 4.64111363182976 3.66586622914552 0.272222281901338 0.278762970845344 0.280432626272376 0.292504491994833 0.277680660583325 0.293903772989177 0.273565540589005 0.279648414173218 0.278416608248563 0.267839986273869 0.270913784204266 0.267839986273869 0.271378804366363 0.272011023401512 0.275158510245580 0.279440169307381 0.278682618470757 0.271694949492142 0.271254961300723 1 1|0 -|/ 8965010 8965662 8965432.889 8964531 8967415 - gene protein_coding_gene FALSE TRUE AT1G25530.1 lysine and histidine specific transporter, putative similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid permease/ amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.1); similar to lysine and histidine specific transporter, putative [Arabidopsis thaliana] (TAIR:AT1G67640.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE80416.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE80417.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 1.96455127330049 16.2221040237592 5.72900957761141e-09 8.96246258321529e-05 12.5422974529207 8.14073089474109 1.96455127330049 0.148438833918523
AT1G72230_at 2.33373852088177 2.06050050285804 3.10363081440653 3.15490639765997 2.46355001967381 2.66597657394334 3.57849793734983 3.62127888870659 2.79405664331987 3.08649157283427 5.57170241805873 6.84369382577813 5.75993279800161 6.36968809109989 6.92016955544882 5.87829628112963 6.53261721209741 5.85913786798122 4.00062103341588 0.267269675721516 0.257084351490216 0.246752246526316 0.246939444038132 0.256133453207109 0.254587798483794 0.246621546653721 0.248418201489401 0.252285573505377 0.250697502924932 0.246621546653721 0.253656857227580 0.250504417581933 0.26628932203905 0.258317516004637 0.246621546653721 0.262108131527686 0.253269847234464 0.255444015782609 1 1|0 +|/ 27191969 27192726 27192397.2 27191728 27192906 + gene protein_coding_gene FALSE TRUE AT1G72230.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G22480.1); similar to Blue copper protein precursor (GB:Q41001); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 1.43584683099064 16.1665816434196 5.93862309288724e-09 9.28978810420351e-05 12.5290846982971 7.6280738766297 1.43584683099064 0.0599715986479338
AT4G25480_at 7.45283414846499 7.75817379193284 7.52173473105099 7.60356832505729 8.10549810706918 8.13365045329088 5.87558674095622 6.07328793952626 4.90296399991195 3.88742702296631 6.23524702590997 6.34423791459533 6.87917157933858 6.38810218674041 5.78581894042014 4.70368808418655 6.70839745336609 5.79742187103703 3.95882962504145 0.226186227896431 0.224157653569983 0.224269105118036 0.229866772538362 0.229463062872891 0.231604176371248 0.225121800416221 0.231495678640855 0.240312572518237 0.229827855161244 0.227562628764839 0.222802230359169 0.222802230359169 0.242531721324546 0.236083407771034 0.226233664361203 0.237025792580551 0.232751748616082 0.224316959390543 4 4 - 13018415 13018923 13018608.909 13018224 13019131 - gene protein_coding_gene FALSE TRUE AT4G25480.1 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. Identical to Dehydration-responsive element-binding protein 1A (DREB1A protein) (C- repeat-binding factor 3) (C-repeat/dehydration-responsive element- binding factor 3) (CRT/DRE-binding factor 3) (DREB1A) [Arabidopsis Thaliana] (GB:Q9M0L0;GB:O65612;GB:O82131;GB:Q9SAZ3); similar to CBF2 (FREEZING TOLERANCE QTL 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G25470.1); similar to DREB1A [Nicotiana tabacum] (GB:ABD65969.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.45333133243651 16.142893884119 6.0305792495344e-09 9.4330320621217e-05 12.5234173778469 12.4930422036298 1.45333133243651 0.0647065605008619
AT3G18250_at 9.03199667787172 9.3453844026052 9.77581421557936 10.1995214045742 8.25121514226133 8.23853315013281 2.54985394299001 2.21606167672496 3.14081326790711 3.59854529800981 2.89865953447954 2.79037738495588 3.30981439904745 3.43837653451272 2.48579344913934 2.43238132511454 4.16112869181752 3.08731676928541 2.40259928585955 0.409434463562292 0.405016879622574 0.411984466088903 0.410309303195729 0.415366752626252 0.416816850733755 0.380184688301151 0.380184688301151 0.388800187074091 0.380366179000741 0.386313223212180 0.380184688301151 0.383918619629955 0.380184688301151 0.380184688301151 0.380184688301151 0.396747100440848 0.380184688301151 0.391871109808717 3 3 - 6258219 6258364 6258297.545 6258073 6258423 - gene protein_coding_gene FALSE TRUE AT3G18250.1 unknown protein 1.67930426510375 16.1202456192413 6.11995090400421e-09 9.5722152089530e-05 12.5179817118720 10.5124477240772 1.67930426510375 0.107978033749030
AT2G40960_at 6.32468530684789 6.06799315176777 5.05287864166291 4.31972413587409 5.19649795427509 4.46019918972248 7.1041048948815 6.52791194075624 6.90031299084891 7.8813560938119 5.11540344502619 4.52603020932022 4.15067888369898 4.48160997838276 4.36905195242684 4.95648136177751 4.87722650305966 3.57156047566952 8.08508409684936 0.239333001642806 0.2426833174151 0.239038659695917 0.249107658198997 0.245652614428772 0.243287649990053 0.261140289116886 0.249999815537008 0.262335311575328 0.243152598064765 0.253577881811425 0.239038659695917 0.242436785429965 0.240341434252089 0.243809144965829 0.239038659695917 0.250465723767442 0.247168614192708 0.251006663587518 2 2|0 +|/ 17103601 17104412 17103960.5 17102600 17104532 + gene protein_coding_gene FALSE TRUE AT2G40960.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G56680.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -2.43254727625644 -16.0984608741160 6.20727665929786e-09 9.70818069514185e-05 12.5127375117246 11.6958776078103 -2.43254727625644 0.210355086100644
AT3G10720_at 8.55371695759896 8.90659417083977 5.35984158849209 5.72880226151038 7.24000670854329 7.1921128721757 9.23256695155512 9.33466052211626 10.0864228293506 9.79655260082006 10.0283730291082 10.4709682533608 9.54129813087984 9.5043141915631 10.1999089789543 9.20823656345817 7.4516832654023 9.52770347908858 10.1362334086711 0.155551810373985 0.159913221222477 0.194148698880566 0.190423083319305 0.167759000376525 0.174022968202811 0.16148529423775 0.161320818060776 0.160117713543844 0.160633469128145 0.158558936491360 0.16248730762631 0.162786890755723 0.160205977235038 0.160502984415569 0.158370915482609 0.169846716058753 0.158828977078804 0.156666449372737 3 3 - 3354667 3355417 3354932.818 3354452 3357619 - gene protein_coding_gene FALSE TRUE AT3G10720.1|AT3G10720.2 pectinesterase, putative similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to pectin methylesterase isoform alpha [Vigna radiata] (GB:AAF35897.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070)|similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042865.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:AAT38097.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -1.57076800132542 -16.0519354460283 6.39835300788554e-09 0.000100063842690322 12.5014854528915 17.4425195954827 -1.57076800132542 0.090481482042516
AT3G54090_at 6.49951755213604 6.52269545351592 5.1291745582439 5.3041228658108 4.87644371713579 4.89099771544895 5.82393734270177 5.98096420174004 5.79390296564174 5.7903676023974 3.52912931962078 4.13169024490119 4.280604306611 3.68962302068829 5.15935277447371 5.54165316913848 5.31961940802993 4.50907126589434 6.61584785092358 0.231964149206638 0.232792431611889 0.231031523062331 0.232583447311654 0.234517350605464 0.240097081420245 0.234255084181964 0.235929474126611 0.237671967178262 0.230959208848130 0.235310189152362 0.231953115502772 0.241131065498354 0.23335899438057 0.235034934250709 0.230407314520507 0.243835892522979 0.242861496699173 0.238711921352038 3 3 + 20040233 20040749 20040541.636 20039102 20040964 + gene protein_coding_gene FALSE TRUE AT3G54090.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G69200.1); similar to Os01g0851000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044818.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT81682.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -1.35160356217405 -15.9479128959975 6.84913413400081e-09 0.000107106759587505 12.4760687478159 10.9218812150036 -1.35160356217405 0.0409570994981291
AT1G54040_at 7.80576187850685 7.98351242379657 4.17276306861514 4.59571286076521 3.52185382602728 4.14885042976965 9.63517493615394 9.6689781739191 8.44600907476172 8.93857697890505 9.63404074451765 9.70314634911075 9.6288030123582 9.3131638792493 9.8112265625119 9.95031101801145 8.93760462012203 9.57912438733096 8.3328098804841 0.170299720685180 0.170817996457469 0.186797722795236 0.196264984046815 0.185692623946433 0.18892968534562 0.170299720685180 0.172681864213592 0.185639016219935 0.175183016290602 0.170299720685180 0.171683407381298 0.171683264839845 0.17615655422825 0.172865838678139 0.171250589821062 0.179556936980501 0.182193375454552 0.176640403794088 1 1 - 20174675 20175221 20174915.545 20174383 20177617 - gene protein_coding_gene FALSE TRUE AT1G54040.1|AT1G54040.2 ESP (EPITHIOSPECIFIER PROTEIN) epithiospecifier protein similar to ATMLP-470 (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470) [Arabidopsis thaliana] (TAIR:AT3G16400.2); similar to epithiospecifier protein [Brassica oleracea var. italica] (GB:AAY53488.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -1.83317477326594 -15.9413414097188 6.87875024901465e-09 0.000107563017643842 12.4744509506277 15.5126473912118 -1.83317477326594 0.134577034211902
AT4G04840_at 5.1789285272795 5.87031154538172 2.63765652694329 2.11362249900054 1.85197999293475 1.91986259414437 6.71487037816612 6.63213257320846 8.17135527671464 7.05548788161633 8.18281665010738 8.67118486903441 8.34689952010457 7.9834781957737 8.61554036023425 8.7807880683328 5.7729082073731 8.13766469987734 8.7564652654091 0.263244217739873 0.262283903642546 0.285079517444178 0.28236191220808 0.274329689837188 0.289762018103964 0.266499396471253 0.257869976890878 0.26154017860911 0.257648345667015 0.258410982749241 0.257648345667015 0.257648345667015 0.257648345667015 0.2680605419148 0.257648345667015 0.276106628045382 0.257991160704539 0.260961338412082 4 4|0 +|/ 2449772 2451249 2450315.5 2449558 2451587 + gene protein_coding_gene FALSE TRUE AT4G04840.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21850.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) -1.9506532113226 -15.9387633299743 6.89040707606212e-09 0.000107738405041307 12.4738158714871 12.1428436859330 -1.9506532113226 0.151269548658350
AT3G04060_at 5.3333922623063 5.55851019747231 7.38565612210278 7.33266560572102 7.2434487637848 7.69897543986635 3.21519956370872 3.43999497850247 3.14105149611616 3.91524544498756 3.42912893764852 2.51305761278461 3.51303153174621 3.93978800450357 3.01154892951496 3.45925615943438 4.82628980651142 3.79430847672609 3.19634022567541 0.337843823494101 0.334681712336887 0.350027162148522 0.344405269140239 0.343112263425388 0.343867229676718 0.325829088854796 0.325829088854796 0.33895778247057 0.334345391596107 0.325829088854796 0.327034522764980 0.325829088854796 0.325829088854796 0.329536352775066 0.325829088854796 0.325829088854796 0.331542336990446 0.328354475134365 3 3 - 1053672 1054407 1053938.545 1053373 1055170 - gene protein_coding_gene FALSE TRUE AT3G04060.1 ANAC046 (Arabidopsis NAC domain containing protein 46); transcription factor similar to ANAC087, transcription factor [Arabidopsis thaliana] (TAIR:AT5G18270.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 1.58583384623515 15.8617516573054 7.24872378486818e-09 0.000113333796376414 12.4547415143265 9.3901538189923 1.58583384623515 0.0965892495713854
AT4G13560_at 5.42614089265613 4.76691195497969 3.30512812367626 2.77468973746989 2.41124936225732 2.22162475606822 5.67070914437991 4.78069363854807 7.66501970878934 6.06136341824503 5.0486683909063 4.37973377829028 4.11995724680594 4.00164472551774 4.76859616396164 4.15856224915484 3.84812183580348 4.8296531270861 6.60085085728745 0.279597560990283 0.276504985725385 0.281140981168263 0.284466726846150 0.289798707111695 0.293250707552358 0.273646612074895 0.276145037633970 0.293117506787161 0.286828423652521 0.274769996591603 0.276836754731622 0.275337192539888 0.273646612074895 0.273646612074895 0.278939464787727 0.277906078123639 0.281535979837778 0.286958877289006 4 4|0 -|/ 7879790 7880281 7880003.5 7879557 7880379 - gene protein_coding_gene FALSE TRUE AT4G13560.1 UNE15 (unfertilized embryo sac 15) similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to putative LEA III protein isoform 1 [Corylus avellana] (GB:CAC39160.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -2.43215919226142 -15.8439148299099 7.33457510478191e-09 0.000114668747188160 12.4502949538882 9.50469937682013 -2.43215919226142 0.215036193694284
AT3G29030_at 6.94876489902205 6.73016670553401 3.66084663657951 2.86501838461348 3.90904681955227 4.05720468488855 8.31912864069192 8.24940537582557 8.04488971809467 8.26160143206976 9.47806831326273 9.7257704735738 8.256475264556 8.50427857322108 9.54655771271528 8.21097220569103 6.51167748541991 7.8700268930915 8.80735303011423 0.209100652770142 0.206224475356065 0.220814137276819 0.218149046524584 0.219076355210955 0.233664447863160 0.202248339578325 0.204505946965107 0.211815651749207 0.202248339578325 0.208441810744682 0.215190730865079 0.202248339578325 0.206807396720290 0.213908332660441 0.202248339578325 0.213407331271841 0.207986060561448 0.203169903595616 3 3 - 11012783 11013761 11013335.455 11012545 11014595 - gene protein_coding_gene FALSE TRUE AT3G29030.1 ATEXPA5 (ARABIDOPSIS THALIANA EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A5 precursor (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) (EXPA5) [Arabidopsis Thaliana] (GB:Q38864); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin [Cicer arietinum] (GB:CAC19183.2); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.89857015104737 -15.8434975485178 7.3365967427665e-09 0.000114693016879669 12.4501907994394 14.0345776476472 -1.89857015104737 0.145606744481675
AT1G22480_at 0.777814135416038 0.646056990141785 4.56044262318848 4.30493661101479 2.36051483871474 2.15884259288030 0.827200705286975 0.774170930903854 1.2100675716045 1.00010476956342 0.91084032123346 0.69853963414228 1.19986798659492 0.946769341588153 1.19253748070864 0.964091427079497 3.50414536871845 0.601852486255595 0.84827890105051 0.255711488657534 0.256172083493405 0.278885207810972 0.29397186266393 0.272349018148895 0.274370102043512 0.259547227079069 0.256060050367458 0.268218192222979 0.258943811641655 0.262328497425747 0.258690190568488 0.253969882493452 0.261417540291519 0.259452425691454 0.254877718281703 0.28318708402567 0.261272158870586 0.256573411517686 1 1 - 7934238 7935018 7934533.818 7934156 7935371 - gene protein_coding_gene FALSE TRUE AT1G22480.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72230.1); similar to Blue copper protein precursor (GB:Q41001); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 1.41136011719820 15.8244078052196 7.42973401440186e-09 0.00011614160211313 12.4454195865828 3.18715455504150 1.41136011719820 0.0614592910646219
AT1G21100_at 2.39767242891785 2.42162809696748 2.34499477514218 2.34956717877942 6.58563423820692 6.32222586294216 1.23351531973532 1.01317795098370 1.34213724975807 0.8914982158046 1.34477941551575 1.43771343172263 1.09470287324607 1.72108172830463 1.181272693931 0.926720845337108 1.47187094512135 1.06947312770424 1.12003618207129 0.193138011097960 0.196994437589597 0.199977716672640 0.193321710045501 0.207015438208769 0.230141193412013 0.199811686216572 0.190386002603481 0.195329306491447 0.200208850501089 0.190361135561718 0.195511566046006 0.194240600523079 0.192282033215086 0.195306196886144 0.195505189654516 0.196811695784082 0.210581683992433 0.19263121177762 1 1 - 7387127 7387646 7387534 7386828 7388417 - gene protein_coding_gene FALSE TRUE AT1G21100.1 O-methyltransferase, putative similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21120.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21110.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21130.1); similar to phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] (GB:BAD18975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 1.39858419900781 15.7642858828714 7.73157156146561e-09 0.000120852195077269 12.4303111721909 4.28297319737021 1.39858419900781 0.0595789054673831
AFFX-r2-At-Actin-5_s_at 10.0380129103667 10.0373044147293 10.9489878445659 10.9100463448429 10.9514620106035 11.0582918873632 10.0470674685517 10.3652782758078 9.09507735672856 8.91401089157277 11.0041370863074 10.7737325166205 11.2222094636637 10.8562965383231 11.0724949286939 10.7414538035126 10.8045518410910 10.6948213698991 8.85925582971934 0.100134879563037 0.103282882082240 0.102189178259803 0.104666262743044 0.0998187100634 0.104880073216681 0.101774568897721 0.099263937232885 0.121453567182008 0.109575493892874 0.102790901013229 0.101505194371000 0.105258081822282 0.104293499974991 0.102147402338835 0.101484797280360 0.102429895605691 0.104153932314238 0.108859250364758 NA NA NA NA NA FALSE FALSE 1.39268937766019 15.7457013866876 7.82755386718739e-09 0.000122344666944139 12.4256156998783 20.4707198376976 1.39268937766019 0.0584780574963723
AT3G56170_at 8.88827417080422 9.115205241066 9.55418229292108 9.55636674545912 9.72152563401679 9.28103267431224 7.81974974546696 7.65896628740233 6.36913287473275 6.15489482029512 8.04086819739728 7.8750713084652 8.2813074491658 8.53686070029701 7.41876710022432 7.96259503734704 8.68633273219111 7.65215450597625 5.89163037426273 0.168471410394442 0.167515734367886 0.169082186689874 0.169924267119338 0.177617933513469 0.170497557413835 0.176955790709317 0.185871171766743 0.208062727803333 0.190731874642225 0.169907298886987 0.17718202560072 0.167515734367886 0.167515734367886 0.184799590495857 0.16837290138935 0.176264911718488 0.179257480123168 0.191645898605664 3 0|3 /|+ 20854489 20855228 20854854.111 20853556 20855437 + gene protein_coding_gene FALSE TRUE AT3G56170.1 CAN (CA-2+ DEPENDENT NUCLEASE); nuclease Encodes a calcium-dependent nuclease with similarity to staphylococcal nuclease. similar to Ca(2+)-dependent nuclease, putative [Arabidopsis thaliana] (TAIR:AT2G40410.2); similar to putative nuclease [Eucommia ulmoides] (GB:ABA41005.1); contains InterPro domain Thermonuclease active site; (InterPro:IPR002071); contains InterPro domain Staphylococcus nuclease (SNase-like); (InterPro:IPR006021) 1.53795995730595 15.7346145515171 7.88543039754877e-09 0.000123241391683290 12.4228088426077 16.0470615082544 1.53795995730595 0.090152652366474
AT3G16920_at 1.43310798230757 1.16014093737936 4.73070228777385 5.20136750528506 4.00910899590921 3.88612467054734 2.74325614278306 2.19877176804654 2.44432702730327 2.08211387951946 3.19260078727581 3.13066766076152 2.81644295105371 3.07559372033114 3.65607276398236 3.15196633635237 6.59942239410576 3.933526160017 3.40839969426681 0.274785231133487 0.271987911007191 0.270315026074173 0.268255911484400 0.267446977122191 0.26610154005357 0.266543149327369 0.265244270511438 0.271408836686624 0.266499248047246 0.266422999376559 0.269493640562773 0.263688480011638 0.265453888387257 0.263688480011638 0.263688480011638 0.277187245914122 0.263688480011638 0.268607164095473 3 0|3 /|- 5776730 5777307 5777028.2 5776492 5777895 - gene protein_coding_gene FALSE TRUE AT3G16920.1 chitinase similar to POM1 (POM-POM1), chitinase [Arabidopsis thaliana] (TAIR:AT1G05850.1); similar to chitinase-like protein [Gossypium hirsutum] (GB:AAQ56599.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 1.81129819347742 15.7322795024000 7.89767931026148e-09 0.000123424932260766 12.4222171326521 6.3400642681364 1.81129819347742 0.134896652493324
AT1G06160_at 3.43519963972654 3.54283222822580 5.57583823869808 6.1979568308774 4.78803148728792 4.46984510404546 1.06937186749162 1.15236355758198 2.52101014890116 1.88160993646950 2.34217081490299 2.35786696819151 2.02799187898673 3.02085923277866 1.890497755154 3.88720975707446 2.19105430136844 2.49771797636884 1.75863530453154 0.266001763520029 0.27571162421125 0.283271295798012 0.285283974707538 0.275681120863846 0.281889578595143 0.273717709952397 0.264770127931731 0.27050444315347 0.260600592879879 0.264290553502285 0.265260011623985 0.260600592879879 0.26274405802576 0.265757710108991 0.269452167988453 0.274543082351112 0.273033466809937 0.268162878079771 1 1 + 1883180 1883711 1883392.636 1883003 1883933 + gene protein_coding_gene FALSE TRUE AT1G06160.1 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. similar to ATERF15 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 15), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT2G31230.1); similar to transcription factor TSRF1 [Lycopersicon esculentum] (GB:AAN32899.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.71557269046993 15.5672400163606 8.81818224397286e-09 0.000137801733926564 12.3799104093115 6.06926631036048 1.71557269046993 0.123190918134897
AT2G21130_at 8.21996874702609 8.48737475339866 7.39081744357725 7.473676815207 8.7777505118428 9.01981041825862 4.93662912178098 5.21145989761279 4.56448174380303 4.13513694094072 5.77867173479361 5.74403522473364 5.95783861348382 6.04277981285923 5.36257467091053 4.80039486081681 6.06574325574881 5.7037563086668 3.92917765044328 0.352751961260734 0.352691318006019 0.339119272859718 0.343896117937428 0.362437680814249 0.35703832133329 0.336262822805144 0.334929020545586 0.340274046252396 0.343326076372413 0.332439945200094 0.332439945200094 0.332439945200094 0.335575705277248 0.332439945200094 0.335707939125914 0.340001978395279 0.332439945200094 0.339909255760187 2 2 - 9062724 9063200 9062955.273 9062479 9063313 - gene protein_coding_gene FALSE TRUE AT2G21130.1 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase Identical to Peptidyl-prolyl cis-trans isomerase CYP19-2 (EC 5.2.1.8) (PPIase CYP19-2) (Rotamase cyclophilin-6) (Cyclophilin of 19 kDa 2) (Cyclophilin-2) (CYP19-2) [Arabidopsis Thaliana] (GB:Q9SKQ0;GB:O22516); similar to ROC1 (rotamase CyP 1), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT4G38740.1); similar to cyclophilin [Thellun (GB:AAR27291.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 1.46201559956138 15.4925513301789 9.2725859169667e-09 0.000144893427538522 12.36044572336 12.3854725079117 1.46201559956138 0.0797736203839367
AT1G19270_at 7.79686249318213 7.81865321801124 8.69749827512731 8.48839951589364 8.0866809518372 7.99778146284307 5.4313504771864 5.23968976958517 5.26524707016177 5.33157331071486 5.85298462354216 6.16078734344698 5.79024348542631 6.66446898504398 5.45167453865599 6.29429008801378 6.5967315634435 6.75440089367463 5.17452225463106 0.224362187226369 0.225173222961381 0.232125758779884 0.227340834426653 0.227224206184448 0.232892115885050 0.228983908946438 0.230841056173688 0.236303615348052 0.231326062499597 0.226413610752274 0.227358408453331 0.226440900051645 0.225225488669854 0.231358313680414 0.225392917262189 0.224988044592693 0.225899675726665 0.231720249145452 1 0|1 /|+ 6665127 6665760 6665520.75 6662492 6666019 + gene protein_coding_gene FALSE TRUE AT1G19270.1 ubiquitin interaction motif-containing protein / LIM domain-containing protein similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36860.2); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34242.1); similar to Os06g0182500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056985.1); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34243.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 1.34226727012705 15.4538200182586 9.518206977901e-09 0.000148721984029703 12.3502724794631 13.1710204714542 1.34226727012705 0.0515790210150776
AT3G29670_at 5.82127722713955 5.84181396881485 4.73038909948096 4.97740932968424 5.7176205596475 5.64905779744345 7.00530158558384 6.85897290711928 6.93480403227065 6.7190310708508 5.53430782865483 5.2296336918992 4.85882334749702 5.33455649495858 5.13740077559414 5.80839458492989 5.87638022752042 5.09081788630991 7.12230325284192 0.23534185869402 0.235778677982077 0.229459659465143 0.224655578773879 0.240396252381702 0.236262116927298 0.228033059864527 0.22947105338162 0.228748817960233 0.225247057100262 0.232665774821540 0.224171667137953 0.237141609472801 0.232950957627267 0.229489811071197 0.228517126063 0.239198813646496 0.232222876193845 0.226352034927675 3 3 + 11531213 11531748 11531459.727 11530351 11531829 + gene protein_coding_gene FALSE TRUE AT3G29670.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G29635.1); similar to AT5g39050/MXF12_60 [Medicago truncatula] (GB:ABE91277.1); contains InterPro domain Transferase; (InterPro:IPR003480) -1.33990616145882 -15.4410684277842 9.60061525466994e-09 0.000150000012738963 12.3469111643776 11.9673147126934 -1.33990616145882 0.0512059616049121
AT1G04220_at 2.38116670403548 2.5743160782185 5.15508314527035 4.60711961832706 6.34811396821481 6.0088791269717 5.00415094321009 5.46335325982691 7.17097968677942 6.23888016647314 9.20740952252477 9.02530770159026 8.49288076513923 8.66105722221752 8.70215030834507 8.29315571056573 7.198679607328 8.36155560581522 6.18304759695165 0.258205760351842 0.243563068997290 0.227654571885073 0.227645945597443 0.233767990542360 0.237928758916567 0.234858408027746 0.227479494732435 0.238747275030093 0.233647176307779 0.227490408532981 0.223355205287553 0.223180577412419 0.236717819261523 0.225978771798668 0.223323814955466 0.232380752119431 0.229147126454616 0.24121187631725 1 1 - 1119852 1120421 1120129.909 1119698 1122525 - gene protein_coding_gene FALSE TRUE AT1G04220.1 beta-ketoacyl-CoA synthase, putative Identical to 3-ketoacyl-CoA synthase 17 (EC 2.3.1.-) (KCS-17) (Very-long-chain fatty acid condensing enzyme 17) (VLCFA condensing enzyme 17) (KCS17) [Arabidopsis Thaliana] (GB:Q5XEP9;GB:O64485;GB:Q56WE1;GB:Q8VXW2); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT5G43760.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to fatty acid elongase 1-like protein [Limnanthes douglasii] (GB:AAG28600.1); similar to putative fatty acid elongase [Zea mays] (GB:CAC01441.1); similar to beta-ketoacyl-CoA synthase (GB:AAC49186.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 1.81792881187294 15.4356682374229 9.6357481805057e-09 0.000150539293824040 12.3454858848956 12.2046447082638 1.81792881187294 0.140964443619378
AT1G71880_at 8.62149939700415 8.71806151002466 8.97829822109689 8.96982870405266 9.20750951161516 8.76834415435879 7.47004954149961 7.60417487132562 6.7334087032245 5.7514752869119 7.78391236703574 8.60973576159748 8.00633644693078 8.30738949376063 7.18966771004441 8.54122218950242 7.51654538278076 6.15266411744842 4.66373532308250 0.236781650829784 0.236781650829784 0.245287402127365 0.249826433984972 0.236781650829784 0.244364977171102 0.239087855291471 0.239156618233023 0.260395367327623 0.257029708231038 0.251092471336113 0.236781650829784 0.238923367122099 0.239531244724027 0.264730388245951 0.236781650829784 0.246002001171969 0.255225237679089 0.254656700218409 1 1|0 +|/ 27059095 27059735 27059442.5 27057842 27060003 + gene protein_coding_gene FALSE TRUE AT1G71880.1 SUC1 (SUCROSE-PROTON SYMPORTER 1); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family. Identical to Sucrose transport protein SUC1 (Sucrose permease 1) (Sucrose-proton symporter 1) (SUC1) [Arabidopsis Thaliana] (GB:Q39232); similar to ATSUC6 (SUCROSE-PROTON SYMPORTER 6), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43610.1); similar to ATSUC5/SUC5 (SUCROSE-PROTON SYMPORTER 5), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G71890.1); similar to SUC2 (SUCROSE-PROTON SYMPORTER 2), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G22710.1); similar to sucrose transporter SUC2 [Brassica oleracea] (GB:AAL58072.1); similar to sucrose carrier [Ricinus communis] (GB:CAA83436.1); similar to sucrose transporter SUC1 [Brassica oleracea] (GB:AAL58071.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) 1.46238828185766 15.4227472283342 9.72037966801906e-09 0.000151851771173794 12.3420712925662 15.2820410495608 1.46238828185766 0.0812162683074024
AT4G19710_at 7.06640915669294 7.17224283458265 5.20869018259489 5.55049113108519 6.29712961810481 5.88004057842209 8.76061117313047 8.52498967664003 7.17861596621193 8.13517971361646 6.36602634303071 6.97852235796784 6.55978805943278 6.50282186309273 6.70832280035267 6.75185490610015 6.69087451530702 6.85003447763994 7.69036356609887 0.223555015753446 0.217991965943959 0.23589229874886 0.226672175057809 0.220958675948926 0.226552184566308 0.226505534088900 0.220460485408874 0.231943528061739 0.223959798259284 0.217991965943959 0.220591387503326 0.225394725198202 0.222673768562195 0.224002415799824 0.220434809806228 0.223224825671342 0.240325369458639 0.220849608247886 4 4|0 +|/ 10728797 10729522 10729242.4 10724865 10729778 + gene protein_coding_gene FALSE TRUE AT4G19710.1|AT4G19710.2 AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase|AK-HSDH/AK-HSDH II Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. Identical to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) (Beta-aspartyl phosphate homoserine 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (AKHSDH2) [Arabidopsis Thaliana] (GB:O81852;GB:Q3E9Y8); similar to AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I), aspartate kinase/ homoserine dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G31230.1); similar to Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I [Medicago truncatula] (GB:ABE90460.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05981.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05983.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Bifunctional aspartokinase/homoserine dehydrogenase I; (InterPro:IPR011147); contains InterPro domain Homoserine dehydrogenase, NAD-binding; (InterPro:IPR005106); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -1.56949887466003 -15.315311206101 1.04562253840823e-08 0.000163336696724749 12.3134411549165 13.9796174175773 -1.56949887466003 0.103473001744395
AT3G57680_at 5.6221557300713 6.15535167957222 7.76680042929619 7.35363364568051 7.80134894660132 7.49629303524749 6.84653838315857 6.57398951085558 4.02396841647892 4.65784604138518 6.231373620343 6.14159815093485 7.11655846133319 7.89813921294535 4.93950021169586 7.44977148897298 7.73794389402738 6.00587714848201 4.67859218912692 0.223292074855824 0.220526364569127 0.222679237009792 0.227072294273421 0.222413009769420 0.215229528822333 0.218312690184555 0.218111043775742 0.240702312803264 0.229307393608474 0.221451887185745 0.217122071459134 0.218907872680352 0.22527677455482 0.235849125989899 0.218897270785084 0.219926631648599 0.238212455597795 0.226938429342814 3 3|0 +|/ 21393858 21394564 21394257 21392031 21394606 + gene protein_coding_gene FALSE TRUE AT3G57680.1 peptidase S41 family protein similar to C-terminal processing protease, putative [Arabidopsis thaliana] (TAIR:AT4G17740.2); similar to carboxyl-terminal processing protease [Nostoc sp. PCC 7120] (GB:NP_487460.1); similar to Os06g0318600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057504.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S41; (InterPro:IPR005151); contains InterPro domain Peptidase S41A, C-terminal protease; (InterPro:IPR004447) 1.77081828977672 15.2875115158346 1.06563531933826e-08 0.000166452236880636 12.3059630516868 12.5237959980215 1.77081828977672 0.136521014366743
AT1G26390_at 3.53076112757717 4.05081809553589 7.57347735419442 8.42087016270384 6.35985119013571 5.7829130264549 1.28294169104767 1.38173661626966 1.57732284057206 1.94986592237304 1.68731575843423 1.45169982851764 1.66655821169587 1.40508180866478 1.60170371901327 1.43578066352779 1.84774910723322 1.69289404500074 1.3741036797681 0.315329621248841 0.321900735107838 0.335729754880622 0.32078775735881 0.333666475676818 0.35330254476344 0.297443679928304 0.295612078923482 0.30250484507247 0.295564880916561 0.298497165369958 0.293398711606487 0.295422843203974 0.293398711606487 0.299784224943037 0.293398711606487 0.294883876011364 0.293398711606487 0.293398711606487 1 1 - 9130367 9130694 9130525 9130004 9131766 - gene protein_coding_gene FALSE TRUE AT1G26390.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26410.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26380.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26420.1); similar to FAD linked oxidase, N-terminal [Medicago truncatula] (GB:ABD32603.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 2.21877364797725 15.2310904411860 1.10754571117979e-08 0.000172987564629171 12.2906965084164 6.41410217815591 2.21877364797725 0.19966278142304
AT4G36010_at 5.11390834392904 5.09705736889934 6.06874396650289 5.97569590771228 6.08283952131556 6.07391300892405 4.48806895575051 4.9953711454254 0.991217874331467 1.10387221774137 2.21403331538297 3.1057944450433 3.23433181767728 3.08119109002686 2.58602604209915 3.84204312337239 3.18745715587310 3.27148250811687 1.58007670942309 0.230049192623686 0.235628035286725 0.238571914626803 0.235269674499443 0.231183814509563 0.245789339975096 0.228392982016392 0.231035135587464 0.236184267957115 0.241018059052295 0.239186287574202 0.238671115482879 0.229551641578794 0.233359466423793 0.23333397350915 0.231367059581727 0.235495163180759 0.242139181910981 0.235727453808470 4 4 - 17039485 17040623 17040105 17039066 17041144 - gene protein_coding_gene FALSE TRUE AT4G36010.1|AT4G36010.2 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT2G17860.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 1.48346799215648 15.2211234159935 1.11513404812107e-08 0.000174161635635549 12.2879871061171 7.6321250461562 1.48346799215648 0.089316509781118
AT1G74710_at 8.98510041143911 9.29576155666971 11.2063476497877 11.2756413438149 9.66116057717066 9.18120390481708 5.72488815143108 5.18076182393314 5.35747677274757 5.06455451301793 5.68930844569568 5.82724485611975 5.33250970478685 5.74287067265109 5.57463679127396 6.38699811033731 5.74864708119625 4.92323710948397 5.06028049648496 0.302853966474347 0.310148567650217 0.317086168637135 0.315742240428571 0.306811457464384 0.305206010594395 0.295849308598449 0.29939529778618 0.302121206875549 0.317231870953654 0.295849308598449 0.299492801934389 0.298148814431906 0.295849308598449 0.295849308598449 0.309959790384803 0.331129822269861 0.302431466755036 0.303375697461169 1 1|0 +|/ 28076373 28077354 28076854.625 28073956 28077809 + gene protein_coding_gene FALSE TRUE AT1G74710.1|AT1G74710.2 ICS1 (ISOCHORISMATE SYNTHASEI); isochorismate synthase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). Identical to Isochorismate synthase 1, chloroplast precursor (EC 5.4.4.2) (IcsI) (Isochorismate mutase) (Salicylic acid induction deficient 2) (Sid2) (Enhanced disease susceptibility 16) (Eds16) (ICS1) [Arabidopsis Thaliana] (GB:Q9S7H8;GB:O81522;GB:Q9ASQ4); similar to ICS2, isochorismate synthase [Arabidopsis thaliana] (TAIR:AT1G18870.1); similar to isochorismate synthase [Capsicum annuum] (GB:AAW66457.1); contains InterPro domain Isochorismate synthase; (InterPro:IPR004561); contains InterPro domain Anthranilate synthase component I and chorismate binding protein; (InterPro:IPR005801) 1.76343569269447 15.1901809394416 1.13905456594318e-08 0.000177886151563346 12.2795517593092 14.2208342726462 1.76343569269447 0.137111706038701
AT2G05630_at 8.12525802477855 8.33223437259656 8.86133875051893 8.80133171568732 9.18464359031306 8.72594344343324 5.77418530493137 6.13235256312731 5.39193966241635 5.05535441959066 6.64172765999813 6.33686552217015 6.2568065630619 6.47346241526511 6.29743859919286 6.38651440458453 6.70854015812075 5.65932965319378 4.54572996921208 0.224983174403841 0.223149129671551 0.228836383841761 0.231162871790361 0.235714302592901 0.237254798964325 0.220979691385297 0.22295729804058 0.226108479758484 0.233737216678471 0.229500992723146 0.221524132880180 0.229530208083897 0.230322581586767 0.231723763865229 0.219564324762378 0.230596611760604 0.229614177689480 0.224764135827654 2 2|0 -|/ 2083209 2084748 2083580.667 2082983 2084879 - gene protein_coding_gene FALSE TRUE AT2G05630.1 ATG8D (autophagy gene 8-related); microtubule binding in the Arabidopsis autophagy pathway similar to ATG8C (AUTOPHAGY 8C), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G62040.1); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar to Os08g0191600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061171.1); similar to Os04g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 1.57485887341920 15.1498544246031 1.17107112436183e-08 0.000182874466780343 12.2685033391488 13.6635411235173 1.57485887341920 0.107395675121086
AT1G76590_at 8.75894790727421 8.81815973715775 8.98270320006921 9.13703321956579 10.0920850305898 9.4705834752177 5.84162866763262 5.94086481387917 4.58856272929287 5.55107712978711 5.47253351549588 5.55869089103902 6.72737102350199 6.03839367522099 5.5533598955784 6.47846281352666 7.26066829568003 6.49574941005948 5.06915581972597 0.294547504842439 0.298007742003905 0.308353343784509 0.301404226088932 0.296462805155347 0.305074804738873 0.291588752337539 0.290308510582106 0.314794883975674 0.286929722914325 0.291616152998176 0.286929722914325 0.287311614785133 0.286929722914325 0.301993471343232 0.286929722914325 0.297884581078522 0.286929722914325 0.293221124827131 1 1|0 +|/ 28746031 28746717 28746382.1 28745585 28747101 + gene protein_coding_gene FALSE TRUE AT1G76590.1 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G21000.1); similar to Os06g0624900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058108.1); similar to putative zinc-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35686.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 1.60462804014276 15.1435597790336 1.17615639472443e-08 0.000183656821036219 12.2667731434639 14.0141268812307 1.60462804014276 0.112610034213411
AT1G19020_at 8.42327691651183 8.6341232568491 9.11491376434757 9.36474618557114 8.32348260338929 8.2952005323892 4.05464926509116 4.70161260819855 7.44434927911816 6.18181842648322 7.63456005239013 8.4800297147403 6.43142875148464 8.01239283777402 7.33927181202403 7.00628445715989 6.65547940211042 7.36124298792728 5.34362527539415 0.204077669008178 0.206264480365554 0.207370233300462 0.205041422149485 0.215996649555535 0.213625095710877 0.232460599237483 0.232155279484361 0.209242826066802 0.213195034657755 0.203531140497726 0.205383789167736 0.207529987725847 0.212996630332456 0.225600809386771 0.212387315115753 0.23519929239246 0.204639475169286 0.246672570398947 1 1 + 6568135 6568368 6568238 6568064 6568588 + gene protein_coding_gene FALSE TRUE AT1G19020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48180.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82379.1) 1.68149609235723 15.1250203580544 1.19127397388080e-08 0.000186005518281747 12.2616683935833 14.4581759310184 1.68149609235723 0.125537276576326
AT2G27200_at 7.34982492506919 7.44646397526091 7.87637799961749 7.57944830318235 8.03443551125673 8.21537791016705 5.04816527194433 5.16440324722923 4.97406341122911 4.29087331566072 5.59385194304651 5.28096464719649 5.82988116967313 6.00587221101128 5.28200344848301 5.41371953627921 6.14695970550349 5.6848089907454 4.53509315771328 0.26445079964981 0.266637954413324 0.270433339647761 0.271067759115465 0.269409364206023 0.267876712645778 0.266123667184290 0.26817432625343 0.272388991571588 0.275398462116537 0.272926042541315 0.265319289964815 0.267271508585745 0.270617414116811 0.268922007915603 0.263846649282163 0.263741248959428 0.269540702144163 0.288086405543798 2 2 + 11634468 11634920 11634694.909 11632495 11635267 + gene protein_coding_gene FALSE TRUE AT2G27200.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT1G08410.1); similar to GTP1/OBG [Medicago truncatula] (GB:ABE78155.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) 1.36447166056897 15.1153857865297 1.19921364848974e-08 0.000187233226938703 12.2590103223806 12.2166959769793 1.36447166056897 0.0656143710954176
AT4G26670_at 7.46197843539191 8.04092353959725 7.06557314750476 7.14432072543348 8.7987306144655 7.95235373189652 4.86698395244063 4.7705099387653 4.24157920483668 3.98220316834155 6.73757798341482 7.22995368048799 6.51084728294807 6.75630383784203 6.87822972518973 5.67647557123256 5.99546183200331 6.38934496031917 3.47458736618416 0.252729683438574 0.242211435573417 0.244491511877648 0.243191717492915 0.252984697399872 0.245547394033966 0.246135760618437 0.243517197059933 0.246134823942804 0.243022472070722 0.240948640325911 0.250856115923259 0.250121407238722 0.241458311446059 0.24816712210982 0.243719677330815 0.23794531914166 0.238222351907321 0.242027614371299 4 4 + 13452368 13453543 13453062.364 13452123 13453990 + gene protein_coding_gene FALSE TRUE AT4G26670.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein similar to protein translocase [Arabidopsis thaliana] (TAIR:AT5G55510.1); similar to mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94438.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 2.03873168383427 15.0652786789581 1.24144506451665e-08 0.000193814403472339 12.2451283572138 12.2232872301705 2.03873168383427 0.178761336250452
AT3G51240_at 3.44520682140693 3.66913321357332 2.80674782189102 2.96886638528981 2.56368118003737 2.86216821384665 7.56724789069537 7.62128361090782 3.81748401666218 5.29030798358147 4.16823986253127 4.67170467448909 4.66049761494776 4.86130188533554 3.9266373177017 4.47429083986864 4.71303994253186 4.63694856304301 4.40086462129436 0.194701601725758 0.189884949369563 0.191991293021036 0.200442868517134 0.194738742008333 0.189884949369563 0.215902333518435 0.219642218121342 0.199770118825579 0.197721842242264 0.189884949369563 0.192661862107641 0.191057827685107 0.194309457509082 0.196994394391366 0.189884949369563 0.217464592021711 0.195406746994526 0.192723896483376 3 3|0 +|/ 19037029 19037609 19037317.8 19036243 19037918 + gene protein_coding_gene FALSE TRUE AT3G51240.1 F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. Identical to Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavanone 3- hydroxylase) (Naringenin 3-dioxygenase) (FH3) (TRANSPARENT TESTA 6 protein) (F3H) [Arabidopsis Thaliana] (GB:Q9S818;GB:Q38877;GB:Q9C526;GB:Q9C528;GB:Q9C530;GB:Q9C563;GB:Q9C5V7); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G24530.1); similar to flavanone 3-hydroxylase (GB:AAC49176.1); similar to Naringenin,2-oxoglutarate 3-dioxygenase (Flavonone-3-hydroxylase) (F3H) (FHT) (GB:Q05965); similar to flavanone 3-hydroxylase 1 [Brassica napus] (GB:ABB91635.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -1.38207746841811 -15.0613612562635 1.24481430176367e-08 0.000194327960648326 12.2440389381990 8.69652595624042 -1.38207746841811 0.0710240936298259
AT4G31800_at 9.05932778166754 8.84726426558356 10.8400075804316 10.9024875294135 6.96299692800195 6.77763510218683 2.67176759025334 3.03129480295966 3.10347146742791 3.72174336616508 3.31889540032935 2.94916745210521 2.78756126828315 3.40781967797328 3.24260039983047 3.726562205392 3.48698490287469 2.97557751461857 3.26482485827355 0.226684565187102 0.224921149341672 0.226247396340067 0.226914971775965 0.240503553577795 0.235054700517045 0.221507045024661 0.220636290674252 0.232543200524894 0.223558667225268 0.220636290674252 0.225323419491127 0.227190495003087 0.222659811079792 0.220636290674252 0.220636290674252 0.231151252899864 0.226885707615297 0.220636290674252 4 4 + 15384056 15384771 15384406.909 15383207 15385035 + gene protein_coding_gene FALSE TRUE AT4G31800.1|AT4G31800.2 WRKY18 (WRKY DNA-binding protein 18); transcription factor Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. Identical to WRKY transcription factor 18 (WRKY DNA-binding protein 18) (AtWRKY18) (WRKY18) [Arabidopsis Thaliana] (GB:Q9C5T4;GB:O81768;GB:Q944H8); similar to WRKY60 (WRKY DNA-binding protein 60), transcription factor [Arabidopsis thaliana] (TAIR:AT2G25000.1); similar to WRKY1 [Brassica rapa subsp. chinensis] (GB:AAS13378.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.42095885680639 15.0575138918015 1.24813296877659e-08 0.000194833556426026 12.2429684195388 10.6867190308779 1.42095885680639 0.0797730386210764
AT1G27120_at 4.50113845837557 4.60061465003958 2.76712491004158 3.09214507808825 3.42962635818517 3.52568325448819 7.18550968677409 7.57032115844624 6.31265444701741 7.17427352388057 7.43561913182388 7.9108825698182 6.63048722049306 7.20533722188153 6.86535227991201 6.19722913014305 5.03133254708631 6.08896443765745 7.07463746726931 0.241633926375508 0.243293590457706 0.248357471001774 0.242386156216003 0.243079680314243 0.244829856878135 0.249227600308503 0.23988238921139 0.247811979523688 0.240359442849694 0.242497376010035 0.240196789042869 0.23988238921139 0.242786786149512 0.240651360171254 0.23988238921139 0.24923883188682 0.243576724910351 0.23988238921139 1 1 + 9423096 9423870 9423584.091 9421164 9424056 + gene protein_coding_gene FALSE TRUE AT1G27120.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74800.1); similar to galactosyltransferase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83183.1); similar to galactosyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99414.1); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -1.47197783345595 -15.0469745562458 1.25727340704615e-08 0.000196247806105833 12.2400329183524 11.3462733010087 -1.47197783345595 0.0903935955343577
AT3G15310_at 0.157173015868291 0.445123385783845 1.27077024989214 0.785389230538438 0.432946298271139 1.09246211340814 5.09776673613147 4.81328521358951 3.78179000307437 5.20151406080986 2.75201614037451 2.48217125998538 1.80878338582591 2.74656915544115 1.78523441317862 2.53710790553358 1.84178738439014 1.93677151506397 3.84417386235956 0.452395219191946 0.434277292021991 0.464301155104404 0.454358232285340 0.437691913895636 0.434277292021991 0.485058240771304 0.477693859639498 0.475916368222833 0.465777355717563 0.461896779372844 0.434277292021991 0.445176456460047 0.434277292021991 0.441655097901221 0.459714315949206 0.434277292021991 0.450696610793435 0.467733941769236 3 3 - 5152638 5152849 5152732.8 5152106 5153649 - gene protein_coding_gene FALSE TRUE AT3G15310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966) -1.88623297262812 -15.0288535003984 1.27315993572589e-08 0.000198714802768097 12.2349755380044 5.01793009062975 -1.88623297262812 0.158077738824196
AT4G23300_at 8.0832664090452 8.07080150394336 6.54892353816062 6.19976444728201 7.5829348787301 7.16139937852885 8.5633475326193 8.3543155639818 8.49419342101824 8.38176398808912 7.1174929850989 6.80583694173633 6.66981516103393 7.05495440966677 6.67343831352454 6.624051971338 6.44307716729825 6.60932203244046 8.32522348052241 0.207807732068734 0.209280510175567 0.217107064124138 0.208729154265243 0.201371349411545 0.224919032124754 0.201371349411545 0.204494588732627 0.210816701041652 0.201371349411545 0.206741649181848 0.203249875080869 0.207924440062104 0.204879619885383 0.201371349411545 0.201371349411545 0.209973615748628 0.219306101740454 0.202782871325953 4 4|0 +|/ 12183772 12184498 12184232.9 12181942 12184714 + gene protein_coding_gene FALSE TRUE AT4G23300.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23210.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.52266109941573 -14.9689509253922 1.32724955567082e-08 0.000207143838153545 12.2181655433164 15.1456652828583 -1.52266109941573 0.101418594768820
AT1G67600_at 2.69170966608238 2.74666428068124 4.00996930052854 4.14317710656919 5.17837792665448 4.73155874276898 2.10693128587477 2.36060400094459 2.43102418519757 2.76074484438075 3.40209958411431 2.99428443182536 3.60514357415294 3.66695357839403 2.6449230518939 3.32291487949474 3.87054395011215 3.1736188302817 2.09002169745529 0.225236095531459 0.228320825777003 0.227517873338789 0.226483966864348 0.240752975045555 0.237012431815617 0.226313561788717 0.234640277874337 0.225522653122238 0.228101032988621 0.222930125258076 0.222930125258076 0.223752052706421 0.235527577603612 0.229438214282967 0.228262993102688 0.224248624461511 0.235928409276126 0.231536333328524 1 1|0 -|/ 25340369 25341092 25340776.4 25340089 25341325 - gene protein_coding_gene FALSE TRUE AT1G67600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24350.1); similar to Os08g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060903.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); similar to Os01g0901800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045113.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) 1.47354506004516 14.9607580783796 1.33483966771793e-08 0.000208315078544060 12.2158554282379 6.37728594411877 1.47354506004516 0.0923472545897428
AT1G10140_at 8.50998870912962 8.39263140054657 9.16692662728415 9.17773678067445 9.46757403691126 9.45218121924326 6.1686701030708 6.50524056582706 5.76652589172929 5.48068486260124 6.16334524492772 5.27947095846291 6.49683002859729 6.41040341194806 5.94744431105141 7.05528731176267 7.68324584319462 6.26306886102634 5.74563039395633 0.250594360232121 0.252685397229264 0.264731048058540 0.265346244596710 0.268693847262113 0.268788565881408 0.251238377124220 0.262296898298421 0.258628465024611 0.252836986636376 0.257621831395780 0.256911912651118 0.248651596421275 0.249839750385992 0.253267747457647 0.248651596421275 0.262869551943273 0.254581087742192 0.254933290801366 1 1 - 3322973 3323420 3323206.273 3322804 3323550 - gene protein_coding_gene FALSE TRUE AT1G10140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58420.1); similar to Os07g0123800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058800.1); similar to Os03g0769700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051398.1); similar to hypothetical protein MtrDRAFT_AC140720g19v1 [Medicago truncatula] (GB:ABE79597.1) 1.33503929249693 14.9554542591102 1.33977846380643e-08 0.000209072429276994 12.2143585046402 14.3934523699027 1.33503929249693 0.0617701435619283
AT2G29120_at 8.68808962333885 8.80901013510301 7.85419667177982 7.91745885373804 7.95279236444918 7.75679812022477 7.21158490827991 7.00268643225969 7.47653712215153 6.10854911761353 4.40201779329458 3.82049365608291 4.33256915610892 4.91410033030302 3.49393909656342 3.68506538551114 4.38181523184693 4.04916818915882 6.48387904531929 0.235098712316098 0.235098712316098 0.237029856398986 0.236452329039894 0.240298671915662 0.243223297398907 0.237799023741723 0.243073748460203 0.260579037470876 0.235098712316098 0.238365234162297 0.242507078803119 0.243954039711205 0.247657223817941 0.252478324598576 0.251017824047691 0.246416705038860 0.242450824513909 0.235098712316098 2 2 - 12518605 12519233 12518839.727 12518369 12522972 - gene protein_coding_gene FALSE TRUE AT2G29120.1 ATGLR2.7 (Arabidopsis thaliana glutamate receptor 2.7) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GLR2.7) [Arabidopsis Thaliana] (GB:Q8LGN0;GB:O81080;GB:Q8RY02); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.8 (Arabidopsis thaliana glutamate receptor 2.8) [Arabidopsis thaliana] (TAIR:AT2G29110.1); similar to ATGLR2.9 (Arabidopsis thaliana glutamate receptor 2.9) [Arabidopsis thaliana] (TAIR:AT2G29100.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.5 precursor (Ligand-gated ion channel 2.5) (GB:Q9LFN5); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -1.30614513118341 -14.9096606843372 1.38325662822214e-08 0.000215843364267783 12.2013873818848 13.3113527385901 -1.30614513118341 0.054909399695445
AT2G31890_at 6.13322114638065 6.32535618507596 5.40242314685926 5.45972390722494 5.66246510139301 5.68869073625286 6.47956196905174 6.449639826796 5.94424703456545 6.81888764532933 4.05333648338702 4.13235327137548 4.6804944883964 4.18329441820526 5.59369651625351 5.70619197119387 5.67137215309037 4.75117875095122 6.88988929810982 0.170628490529176 0.170628490529176 0.176663294569730 0.17511785175429 0.171604643818861 0.175264570376161 0.172476345618448 0.170628490529176 0.186772648059447 0.180260273262131 0.175880314804989 0.1852624791834 0.170628490529176 0.172092810602589 0.177708792950712 0.173084710978695 0.172926826710149 0.173223701232878 0.179792015950949 2 2|0 -|/ 13564445 13565037 13564768.2 13564008 13566844 - gene protein_coding_gene FALSE TRUE AT2G31890.1 similar to Os03g0425000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP20833.1); contains InterPro domain RAP domain; (InterPro:IPR013584) -1.24906864747757 -14.9014898638299 1.39117446606104e-08 0.000217064951939504 12.1990641747522 11.6488841270167 -1.24906864747757 0.0353736469363549
AT3G10050_at 4.72982620404715 4.48072015934695 3.32932971750333 3.97401263055814 3.67717174180144 3.84972860822778 7.24969217876852 7.78718826141992 5.23809731595469 5.98099732427031 3.8722222597887 4.29906241644294 4.05196715338920 4.19920255660366 4.19565050201557 5.46075711060782 4.98607031363465 4.51282392498998 6.10837350383844 0.225510818991069 0.217984928181843 0.219872681563339 0.219134137285901 0.217984928181843 0.219716898234792 0.218517151080789 0.22866362864684 0.228666856873668 0.221064934245552 0.219531622560706 0.217984928181843 0.220668744546269 0.221339188839150 0.220929953350813 0.223102347048122 0.221687803323211 0.225447768733822 0.218184741128814 3 3|0 -|/ 3099209 3100027 3099514.2 3098730 3101766 - gene protein_coding_gene FALSE TRUE AT3G10050.1 OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase first enzyme in the biosynthetic pathway of isoleucine Identical to Threonine dehydratase biosynthetic, chloroplast precursor (EC 4.3.1.19) (Threonine deaminase) (TD) (OMR1) [Arabidopsis Thaliana] (GB:Q9ZSS6;GB:Q9SPF1); similar to ATSR (ARABIDOPSIS THALIANA SIGNAL-RESPONSIVE), serine racemase [Arabidopsis thaliana] (TAIR:AT4G11640.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74610.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74611.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74612.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Threonine dehydratase, C-terminal; (InterPro:IPR001721); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Threonine dehydratase I; (InterPro:IPR005787) -1.84144960568835 -14.8711186601181 1.42104039224915e-08 0.000221710721998712 12.1904052489713 9.9962298098951 -1.84144960568835 0.154431076146551
AT4G00700_at 8.46039953439865 8.78147228729118 9.83188944428287 9.82384990013572 8.38979312636983 7.95929554945993 1.09571380058151 1.04998628392332 3.16659500476441 1.74396929856842 0.847647496856001 1.02719158746536 1.19307405140148 1.19324055342344 0.809328896419849 1.93860172831298 1.47498929172530 1.71386099411145 2.56588153339546 0.215145239312426 0.221785727982885 0.210838247421305 0.21530111173682 0.221782755529596 0.237208441898614 0.220159559648181 0.211814012806880 0.227273912633436 0.217808708593263 0.215905675987086 0.214368217123001 0.216502654196721 0.227311306224004 0.22518647452531 0.216090445156988 0.210557630525812 0.216747386030509 0.217173399926228 4 4 + 288693 289342 289032.455 286051 289514 + gene protein_coding_gene FALSE TRUE AT4G00700.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G22610.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G61300.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to H0306F12.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86177.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 1.46845362061757 14.8601565820503 1.43199080065486e-08 0.000223404884810165 12.1872708078725 8.807495209409 1.46845362061757 0.0932845729990018
AT1G51090_at 7.55501332430755 7.27167677924727 8.73559118689552 8.65315920135012 9.27214208024985 8.7720963592659 8.29233723408854 7.43751491868064 3.44674189109146 4.51521163971284 6.05551587263672 5.23387607115426 6.91721698605566 7.29514277045408 5.27681234758005 8.3344797806035 7.28773940217358 5.6533149421698 3.24589952339986 0.320113223038219 0.323389958764000 0.320113223038219 0.329703799993360 0.328191242614546 0.331420131216229 0.320113223038219 0.325143563410852 0.348277898069863 0.327424009047293 0.323651942788464 0.320174474863798 0.322611498364687 0.322002007637708 0.333589927172406 0.320113223038219 0.32197689149528 0.325561907471845 0.339350387901409 1 1 + 18936847 18937387 18937183.545 18936605 18937618 + gene protein_coding_gene FALSE TRUE AT1G51090.1 heavy-metal-associated domain-containing protein similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT4G16380.1); similar to unknown protein [Glycine max] (GB:AAN03471.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 1.99496144819737 14.7382851581130 1.56011286445387e-08 0.000243377606854803 12.1520946691772 13.3700480303464 1.99496144819737 0.178828492061407
AT4G35180_at 2.74884289407185 2.98491865426026 7.72992997273297 8.1257345885019 2.59898746655768 2.16079273809907 1.20416458084469 0.8097347594726 1.48954231334303 0.65146214775356 1.36910641366545 1.08006229083097 1.13874426119052 0.749658787609108 1.01490007964153 1.03582004795153 0.999090936919863 1.10069126262409 0.727605105865501 0.255926213349966 0.260573676280533 0.27801017485491 0.282104102122160 0.247158626284274 0.248459516381222 0.243921278932030 0.243921278932030 0.247649242669716 0.266007987620143 0.245541222537879 0.260607660089714 0.245585990781657 0.246329040043807 0.245254411446875 0.243921278932030 0.252944283353438 0.247939008950187 0.247440523216984 4 4 - 16738525 16739154 16738814.909 16738344 16740470 - gene protein_coding_gene FALSE TRUE AT4G35180.1 LHT7 (LYS/HIS TRANSPORTER 7); amino acid permease similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT1G47670.1); similar to ORF [Lilium lon (GB:BAA04838.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 1.66087602018866 14.7199302495590 1.58046674093097e-08 0.000246537006917823 12.1467440955958 4.55399443133837 1.66087602018866 0.129500235965077
AT1G49010_at 6.92544628409203 6.33886770342187 5.49644900755764 5.42824651886908 5.25281293403573 4.92787475978578 7.8558062386768 7.56876450113169 7.41984473177519 7.57588401435126 5.86636963136768 6.26421146568136 5.45996503886172 6.09905971537532 6.72379776318142 6.01504157198354 5.97389095030378 6.74198882469246 7.60233750144405 0.227012217812219 0.218363079318269 0.225482037370654 0.227390590657706 0.222715356850091 0.229918150496289 0.218363079318269 0.225874276182946 0.226594110323275 0.218612632752385 0.221415066198896 0.221578294422066 0.223245986109558 0.228824216594349 0.219787315427846 0.220578082973375 0.230053326713335 0.219842184651096 0.218363079318269 1 0|1 /|+ 18137033 18137384 18137251.5 18136313 18137593 + gene protein_coding_gene FALSE TRUE AT1G49010.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G08520.1); similar to MYB transcription factor MYB109 [Glycine max] (GB:ABH02851.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.6427617528889 -14.7081805642017 1.59364756186278e-08 0.000248577146699357 12.1433116759401 13.0621481781319 -1.6427617528889 0.126779967999788
AT1G75680_at 8.81116957617568 8.92225821085032 6.0487990293504 6.35680156784466 7.74436751155428 7.5959891628669 10.2432613953110 10.2221511983512 10.1847348159714 10.3436304540741 10.7583941917259 10.7618662463329 10.1595911254885 10.1435356757231 10.4072049113262 9.94635794729982 9.39842141245554 10.4858505134335 10.2909598298343 0.167720641578993 0.165533245119049 0.213309115008155 0.206880099708875 0.188715381864749 0.187890003875993 0.164173897928213 0.162334778936696 0.168470345008629 0.165017318431584 0.165653201865728 0.163909585155474 0.167750798981376 0.162671327654088 0.163268520417535 0.162334778936696 0.168871470754863 0.162334778936696 0.162334778936696 1 1 - 28420890 28421544 28421132.545 28420713 28423190 - gene protein_coding_gene FALSE TRUE AT1G75680.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1); similar to Os06g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058583.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE81087.1); similar to Os09g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063771.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.31433819546070 -14.7006050360465 1.60220917280855e-08 0.000249896564682949 12.1410956147141 18.5084802663379 -1.31433819546070 0.0623160264663306
AT3G47800_at 10.3683231603265 10.308852552292 9.84004755666346 9.43042425019172 10.1475193683868 10.0079682877177 4.77256206120266 4.14586793550827 6.46821610040713 6.37384436612858 6.88447501915838 8.1313180325439 7.3327137523812 7.24636131537001 6.74751577975957 6.19310236500755 7.30496651633866 5.84686591904176 5.36100037672875 0.293959140568409 0.295977405767217 0.293707049919558 0.296309636554761 0.296404873845312 0.293238831888846 0.294738143012349 0.293825841220125 0.304912865874534 0.295313399268315 0.293376135490570 0.292855937303731 0.29601348906795 0.298714023933115 0.292855937303731 0.292855937303731 0.299566996563104 0.292855937303731 0.295764048581998 3 3 + 17647455 17647956 17647689.545 17645795 17648189 + gene protein_coding_gene FALSE TRUE AT3G47800.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE81353.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 1.67540816405143 14.6997035757154 1.60323129963546e-08 0.000250039953491146 12.1408317530076 15.1419965391386 1.67540816405143 0.132197004522241
AT2G04570_at 8.30408873786009 8.64707208236597 8.82760792460108 8.81943052360376 10.5833365410450 10.3513435750696 8.75408219691341 8.82109318890416 8.56617828569733 7.78762062265525 10.2663710736988 9.95439655103463 9.82979068180824 9.94757245178054 9.78279573825982 8.72521456661403 8.7997178154657 9.74488473025922 7.45631068647894 0.125111518339134 0.123002884109732 0.128712116743923 0.121337709892091 0.120548889039239 0.116590445331768 0.117223436560957 0.120141135511551 0.119020307343753 0.126253764294907 0.117560258664356 0.115807833395474 0.113892889095690 0.119324982041270 0.115192197746536 0.117315952324329 0.126670793746721 0.113377218370345 0.140738308313022 2 2 + 1595433 1596074 1595679.273 1594670 1596346 + gene protein_coding_gene FALSE TRUE AT2G04570.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G42990.1); similar to GDSL-motif lipase/hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22300.1); similar to Os06g0636700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058145.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 1.35424267120345 14.6854787974921 1.61945440765727e-08 0.000252553914874151 12.1366636251736 17.9225299209915 1.35424267120345 0.0726037335967391
AT2G40100_at 7.97756889678657 8.22327209274438 6.28071121389391 6.69701370939125 6.30704003026707 5.92477488010503 8.9283774849183 8.90797122040076 8.71850105352346 9.69060679415817 8.40450720006062 8.85974838154234 7.13479835546098 8.1889038922276 8.96757784565597 9.00044683744496 7.01269413445778 8.20659096132418 8.73369067463274 0.204276560755922 0.201808076070127 0.213339360507654 0.205820748809569 0.214429309269614 0.226912965957183 0.201059536649086 0.216236231980598 0.220396731435234 0.205735475341003 0.197885249170137 0.204139887447554 0.209952609557206 0.197323314321318 0.195463878570099 0.201085371928108 0.217885939857406 0.211498667154710 0.197897239835880 2 2 + 16753248 16754244 16753831.273 16752881 16754478 + gene protein_coding_gene FALSE TRUE AT2G40100.1 LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidopsis Thaliana] (GB:Q9S7W1;GB:Q8L9J2); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -1.51630176085725 -14.6231569527426 1.69266653806365e-08 0.000263954419945646 12.1183026502805 16.0405951702934 -1.51630176085725 0.106709060048043
AT3G15270_at 1.77758833645446 2.00283725922262 1.49558171782733 1.7039760330642 1.74965657162953 1.97475058176292 2.57507838312371 2.90576326563322 7.60723565739328 4.75995839405872 4.44630178257494 2.88397156371189 2.63406151738985 3.54260339983153 4.10909773414862 2.52860683275294 2.103344830364 2.87313297341335 3.79005747691535 0.235438516809689 0.2431492852788 0.254532510153696 0.242054102548631 0.239446339932400 0.240622048679254 0.240448493723783 0.240053520072254 0.281838904198611 0.264292638593521 0.257870422292626 0.236395558999022 0.242746908094547 0.235438516809689 0.238697001328527 0.239749079459011 0.240044828554659 0.240936561549571 0.24665227709196 3 3|0 -|/ 5140656 5141230 5140959.9 5140372 5141353 - gene protein_coding_gene FALSE TRUE AT3G15270.1 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5); DNA binding / transcription factor Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. Identical to Squamosa promoter-binding-like protein 5 (SPL5) [Arabidopsis Thaliana] (GB:Q9S758;GB:Q9SMW8); similar to SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53160.1); similar to SBP transcription factor [Gossypium hirsutum] (GB:AAV51939.1); contains InterPro domain SBP; (InterPro:IPR004333) -1.41496800760995 -14.6219565282216 1.69411160145197e-08 0.000264162822014406 12.1179473891587 6.28609931295434 -1.41496800760995 0.0872485723471356
AT2G29350_at 9.53033760346456 9.35834404393992 11.2833871728366 11.2356691734115 9.0434910326768 8.39492345927261 3.19571318538645 2.82461329148647 3.95461227370720 4.59802843506867 3.05468597617194 2.9451514993249 3.48004559858704 3.65669683603614 3.30225759563623 4.67596952984885 4.53916519401195 3.53559246333679 3.68320479214198 0.295574808532935 0.296961077439350 0.295069593695886 0.300164972331178 0.294217429954105 0.297281717597296 0.276648961674474 0.273207388937909 0.284481491887882 0.282801265229424 0.2744206232438 0.274176513371841 0.279216604011586 0.272699573829825 0.278284499795353 0.279377691057614 0.278506933941423 0.272794831271931 0.294247949713402 2 2|0 +|/ 12608624 12609238 12608896.5 12607991 12609633 + gene protein_coding_gene FALSE TRUE AT2G29350.1|AT2G29350.2|AT2G29350.3 SAG13 (Senescence-associated gene 13); oxidoreductase senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95189.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95190.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06907.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 1.66609804906332 14.5769031909390 1.74932875125346e-08 0.000272755338895440 12.1045700909680 11.9719652471053 1.66609804906332 0.132949893990858
AT3G10840_at 6.39249791427727 6.29960054215377 4.48973669514857 4.13028057171425 5.42158166129831 5.03445845945363 8.1297436701025 8.00250125150716 6.63967268868629 7.05884489887291 6.25851144588159 7.18552910617855 6.3006084413726 6.57428633826931 6.77635326076186 6.55341668637619 6.08605924474119 5.8813660241454 7.03397290525369 0.184264263997653 0.181275365381286 0.190244168030815 0.205811654070045 0.177131391066738 0.197242449680318 0.188058893459063 0.181434058577617 0.188102903714055 0.177131391066738 0.194446450499778 0.182205904592441 0.187171523885971 0.177131391066738 0.180380624786249 0.181725456276846 0.186700331515090 0.185268419191519 0.185476694928929 3 3|0 -|/ 3391320 3392032 3391627.8 3391070 3393295 - gene protein_coding_gene FALSE TRUE AT3G10840.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G15490.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95656.1); similar to Os12g0118400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066007.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -1.44794267170580 -14.5437817729098 1.79117000834243e-08 0.000279261316000668 12.0946807977384 12.6689733370753 -1.44794267170580 0.0953990628579198
AT4G28085_at 4.49683552673375 4.27861924129602 6.33546917023244 6.26695319845664 5.830794445967 5.61935936579100 2.78340278001505 2.75194704515739 3.48348147925964 3.42759806512039 3.7061492126849 2.89926729716142 3.89985900407438 3.7521606540127 2.62945909412485 3.57579132114224 3.86725278300572 3.78679940379626 3.32281361667592 0.2434375476636 0.234705225796411 0.237041142235709 0.239188406718920 0.239480053647377 0.251718587536615 0.250213816467194 0.250299751788328 0.235992149985707 0.234187851083845 0.232808710859557 0.235213200514145 0.232876567680729 0.231301754937494 0.239579621437996 0.231301754937494 0.235857112538314 0.235807724604859 0.234268286160889 4 4 + 13960062 13960242 13960167.545 13959976 13960580 + gene protein_coding_gene FALSE TRUE AT4G28085.1|AT4G28085.2 unknown protein 1.26936876135477 14.5176783188554 1.82491271009275e-08 0.00028450389150346 12.0868539684869 8.2583676300073 1.26936876135477 0.0541766252793112
AT4G21850_at 3.60787864873304 4.1527734411384 8.62266213625285 8.88019548120765 4.48790497504651 4.65646027265479 2.20861362265404 2.45010839394784 2.89372373231112 2.86712508186187 2.70409832596475 2.28336154290834 2.28568798155441 2.14103218726503 2.47379403166955 2.62195654105817 2.44141423242152 2.58654271359769 2.88833859302918 0.301502193705470 0.311415299994830 0.354741388554609 0.343286017694173 0.311741830399251 0.307002984502291 0.307563883278007 0.30487154199076 0.307444380516272 0.306476522474265 0.303763335997245 0.310063089581403 0.300934952265137 0.310489908617197 0.302854319506671 0.300934952265137 0.303692661459813 0.308108052371454 0.303261798152086 4 4 - 11591390 11592120 11591716.273 11591128 11592250 - gene protein_coding_gene FALSE TRUE AT4G21850.1|AT4G21850.2 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21830.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) 1.55806783257983 14.5165608282761 1.82637258588929e-08 0.000284713222414282 12.0865182510467 7.54597382826555 1.55806783257983 0.116084001911104
AT1G65690_at 6.14828030109035 6.42341463012533 8.01770715345896 7.8465533526278 6.02425780813938 5.54352671337053 1.50071426353609 1.45310530608547 1.43044461043534 1.54434696629852 1.31737809205173 1.79783947419985 1.47717972044659 1.31015074696188 1.50021097639765 1.12045837263107 1.72844715048796 1.40692720570233 1.50505676639222 0.425688290258225 0.412576707189994 0.416301265694864 0.415138516748557 0.394468096599816 0.416758943568278 0.383440362477121 0.383440362477121 0.398687931927011 0.384019697134179 0.383440362477121 0.386677519218679 0.383440362477121 0.383440362477121 0.383440362477121 0.390106357317073 0.389551421135722 0.389581832112643 0.386613116316662 1 1 - 24435309 24436356 24436156.273 24435093 24436616 - gene protein_coding_gene FALSE TRUE AT1G65690.1 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related similar to NHL25 (NDR1/HIN1-LIKE 25) [Arabidopsis thaliana] (TAIR:AT5G36970.1); similar to Os04g0677300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054263.1); similar to unknown pollen protein [Petunia integrifolia subsp. inflata] (GB:AAS90599.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 1.47033690900386 14.4938820515118 1.85627598985688e-08 0.00028935630129889 12.0796935027826 6.84499831525519 1.47033690900386 0.100663909271954
AT1G15290_at 8.30783052843348 8.34897497140618 6.80009447783294 6.85787844046567 7.6330766816837 8.07668681400028 9.31331223826505 9.41040081386713 9.7644844622953 9.5870919219483 8.34557082808476 9.05916468394208 8.22450324332944 8.13037501799406 8.63997670089034 8.47575324948232 8.04666170767133 8.48206249688174 9.58816464848769 0.167493469737188 0.162470398675997 0.187517543479131 0.185150444662031 0.176204846508877 0.166354093797753 0.169800225426378 0.164398466361715 0.170899601709074 0.164291355165196 0.164790255428338 0.163943162326372 0.167074583582267 0.168930428667619 0.164770178803394 0.164959026411839 0.168085997131749 0.168533663831071 0.16329042199764 1 1 - 5257326 5257894 5257650.091 5257041 5264809 - gene protein_coding_gene FALSE TRUE AT1G15290.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G28080.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G01320.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to H0811D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86110.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.36213369385328 -14.4452848366177 1.92216330394976e-08 0.000299607594186649 12.0649945104861 17.1295762883834 -1.36213369385328 0.0795389041685413
AT4G09020_at 9.4879049640422 9.1496230012752 9.27571512141076 9.18056720745193 10.0530141293274 9.47148775410935 7.6994056193609 7.37860896401144 7.38919010658952 7.28916992963124 9.6115352322542 9.43592520089693 8.64794931574546 9.51300394498393 9.07852901750113 8.51593883478432 8.6751160343301 9.23667952079964 5.99712568674431 0.213151448561148 0.214889884275975 0.221292894289906 0.216423307194701 0.222232596538543 0.225904572440794 0.213151448561148 0.232639981783427 0.242521086520431 0.258032281592054 0.213151448561148 0.213151448561148 0.222278305637785 0.213151448561148 0.217600802447179 0.213151448561148 0.230739956662905 0.221042005606228 0.248966622028976 4 4|0 +|/ 5787876 5788760 5788371.125 5784073 5788999 + gene protein_coding_gene FALSE TRUE AT4G09020.1 ATISA3/ISA3 (ISOAMYLASE 3); alpha-amylase Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated. similar to ATISA1/ISA1 (ISOAMYLASE 1), alpha-amylase/ isoamylase [Arabidopsis thaliana] (TAIR:AT2G39930.1); similar to isoamylase isoform 3 [Solanum tuberosum] (GB:AAN15319.1); similar to isoamylase isoform 3 [Pisum sativum] (GB:AAZ81837.1); similar to isoamylase [Hordeum vulgare] (GB:BAD89532.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) 1.63190823962135 14.4345858466630 1.93700782008588e-08 0.000301902038838585 12.0617447081342 16.9526224511155 1.63190823962135 0.130029735749327
AT3G15500_at 3.16536217875993 3.29332860097801 4.29406879236129 4.24046179008115 5.3222225210517 5.44430947467554 2.09506897496206 2.16395799783370 1.87751448608676 2.15619570226238 1.87423061135752 1.93900826649086 2.12286955281827 2.24840845766140 1.56368234808107 2.51653537544139 3.25469778259912 2.67383132143762 1.99365962280521 0.245611510393449 0.242254294813897 0.247776913883440 0.248766671111910 0.255945424674027 0.25217360557247 0.241805578218477 0.243341000015210 0.239755502629246 0.243203200685171 0.237972490562896 0.238871797918329 0.256981089242651 0.241588999210865 0.257811705848553 0.245589836841373 0.243442484719426 0.239783412001213 0.243804298301857 3 3 + 5235247 5235842 5235612.909 5234627 5236095 + gene protein_coding_gene FALSE TRUE AT3G15500.1 ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55); transcription factor Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3. similar to ANAC019 (Arabidopsis NAC domain containing protein 19), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52890.1); similar to NAC4 protein [Glycine max] (GB:AAX85981.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 1.20543545025506 14.4135270783332 1.96659172692263e-08 0.000306493320640891 12.0553336031961 5.89398815877327 1.20543545025506 0.0341317313530561
AT4G15210_at 1.22716327415320 1.04806430902162 1.33026180157301 1.02910788026427 1.13176856540694 1.3655055776982 1.19991776935226 1.14186984331813 1.37657762989353 1.25706467337665 5.45289864945818 6.25832070414474 1.49710789247797 3.83823328661638 4.99354868721515 3.67652514057262 1.75912337855186 4.14951055659688 1.43398931457826 0.226864651110216 0.217493900455896 0.215793513583813 0.220763561397833 0.220276552882192 0.215793513583813 0.215793513583813 0.215793513583813 0.218880445279357 0.222029390016483 0.227723770385387 0.230028711223467 0.222999793418347 0.223011766243678 0.225971818777018 0.220206142027444 0.215793513583813 0.231578104500286 0.218882870048798 4 4 - 8666798 8667434 8667177.273 8666338 8669470 - gene protein_coding_gene FALSE TRUE AT4G15210.1|AT4G15210.2 ATBETA-AMY (BETA-AMYLASE); beta-amylase cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY1) [Arabidopsis Thaliana] (GB:P25853;GB:O23375); similar to BMY5 (beta-amylase 5), beta-amylase [Arabidopsis thaliana] (TAIR:AT2G32290.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O65015); similar to beta-amylase [Glycine max] (GB:BAA09462.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O64407); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554)|Identical to Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) (BMY1) [Arabidopsis Thaliana] (GB:P25853;GB:O23375); similar to BMY5 (beta-amylase 5), beta-amylase [Arabidopsis thaliana] (TAIR:AT2G32290.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O65015); similar to beta-amylase [Glycine max] (GB:AAZ38831.1); similar to beta-amylase [Glycine max] (GB:BAA09462.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) 1.32859424413952 14.3631863330624 2.03932230564973e-08 0.000317807988112455 12.0399294400114 3.83872524905030 1.32859424413952 0.073578291936691
AT4G15430_at 2.12035441263478 1.91478190006776 1.73023320308701 1.95753595833444 1.51166742020449 1.31105296622842 3.25891520161276 2.94446161542693 3.58530774463242 3.64462942771822 1.29821272542423 1.32734753004994 1.91258046308341 2.00567493858083 1.26051929153057 2.22610557157554 1.84997281962909 2.03859513227252 3.34847717040848 0.196323182414596 0.199104019258188 0.196989859677013 0.198261485184324 0.196550571916441 0.197590372682904 0.202206394705813 0.196323182414596 0.216944642491427 0.198959797234314 0.209713001534326 0.2036904177036 0.209130861562785 0.202131269995324 0.196323182414596 0.196323182414596 0.196323182414596 0.196323182414596 0.199255857968986 4 4 + 8830684 8831267 8830965.778 8827876 8831503 + gene protein_coding_gene FALSE TRUE AT4G15430.1 similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G04340.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) -1.35913397535337 -14.2227560154009 2.25813063667359e-08 0.000351884497112846 11.9963658126521 4.72663242133523 -1.35913397535337 0.083543260078854
AT1G64380_at 9.29725825949214 9.6816330467654 10.4096179306449 10.4184260855928 10.9698775973841 10.8761689798246 9.7471314289411 9.7238423698463 8.39616192625105 9.27337593067626 10.9518084273564 10.6198809220013 10.5051575289987 10.3618979736192 10.1680060722541 10.4468093979020 10.4632355184646 10.0343186355538 9.0996783353466 0.105673651673695 0.0961418307850803 0.0945612224574667 0.093953667160716 0.0995172531616202 0.0970477357093881 0.097380851544585 0.103719934097488 0.111823226985433 0.110097074660811 0.0981262240655094 0.0954630354980164 0.0975728753697506 0.101858284053657 0.100490219130805 0.093953667160716 0.102639139159989 0.101348485031186 0.112058052950919 1 1 - 23894667 23895086 23894916.455 23894309 23895836 - gene protein_coding_gene FALSE TRUE AT1G64380.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to RAP2.4 (related to AP2 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G78080.1); similar to Os05g0572000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056377.1); similar to apetala2 domain-containing protein [Atriplex hortensis] (GB:AAF76898.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.28843680876391 14.1457325848961 2.38888420938374e-08 0.000372235937506175 11.9720959150229 19.8239751491164 1.28843680876391 0.0686015504975975
AT4G37400_at 5.43040202470748 5.35051190455043 7.83220613058658 7.93096404097372 7.15436844280062 6.99962192469968 6.24638286423109 6.32576948273398 4.06085436758038 4.297572627649 4.14891924206301 4.84649514906163 5.11821911112187 4.84647906581351 3.61084163552305 6.70124895077267 6.00950671172378 3.79353091182809 4.09926121150259 0.210054565323284 0.212666375077662 0.206687594024411 0.21131224798074 0.208321105988783 0.206687594024411 0.211305255376542 0.210735673175753 0.222239367431866 0.215877137950744 0.208340263011251 0.213319011467424 0.207380424919726 0.219735905278742 0.236043460304117 0.208375191199916 0.211481698126206 0.224344588551421 0.214340496709075 4 4 + 17585598 17586159 17585903.636 17584045 17586354 + gene protein_coding_gene FALSE TRUE AT4G37400.1 CYP81F3 (cytochrome P450, family 81, subfamily F, polypeptide 3); oxygen binding member of CYP81F similar to CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37430.1); similar to CYP81F2 (cytochrome P450, family 81, subfamily F, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G57220.1); similar to CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37410.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.18643296368527 14.1034844385331 2.46408239260079e-08 0.00038392867759113 11.9586687749913 11.1772622683183 1.18643296368527 0.0372707987439605
AT1G69870_at 9.13477912352366 9.04222870069348 9.43720032193962 9.62944522082636 9.70307813738948 9.45678869375511 7.95690543938832 7.82024640222513 5.94747311653126 5.85682986990099 6.42778554695907 6.63063016028537 7.38108446251027 7.37178071342246 6.32175492809579 8.04845497199953 8.08531050225498 6.65115616712026 5.20837679332032 0.257732525993328 0.257893567811805 0.26162760636226 0.263598902088672 0.257953390175516 0.265222535766444 0.254129055301359 0.254129055301359 0.277059685177857 0.267814048250728 0.269363158887958 0.259275102568512 0.260736113296819 0.254129055301359 0.270676301725648 0.254129055301359 0.254683424957429 0.263489262284351 0.285287430311100 1 1 + 26323165 26323547 26323340.818 26319690 26323883 + gene protein_coding_gene FALSE TRUE AT1G69870.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G27080.1); similar to Os03g0687000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050937.1); similar to nitrate transporter NRT1-5 [Glycine max] (GB:BAB19760.1); similar to Os01g0913300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045170.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 1.25596979934172 14.0945302325156 2.48034842160136e-08 0.000386438284085492 11.9558124566447 15.4154029757169 1.25596979934172 0.0611492675195115
AT3G05640_at 9.06086212848396 9.01640446950466 9.35127826028833 9.29935973833567 10.1856651610532 9.9991842298231 9.14718809227036 9.03020900605114 7.46870673089248 8.310934698892 10.3663757725957 9.66790651982664 9.80544412268627 9.61860145920301 9.66010433473952 8.73150328510962 9.39196170976899 9.77923408928202 7.88914404860524 0.130387959603606 0.130511026342281 0.133121643630248 0.133936601563781 0.131251645757539 0.130387959603606 0.131315280986304 0.134287995593129 0.154923365742871 0.150193237404020 0.134038373989936 0.130387959603606 0.132154442946631 0.144323806653704 0.140019056819585 0.130387959603606 0.144225062216374 0.134569014083346 0.149391661480825 3 3 - 1640658 1641439 1641052.182 1640399 1643259 - gene protein_coding_gene FALSE TRUE AT3G05640.1|AT3G05640.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT5G27930.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85677.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 1.19162608774289 14.0914568787707 2.48595829690679e-08 0.000387287443075109 11.9548312305002 18.1448871712837 1.19162608774289 0.0398894794087752
AT1G01720_at 8.09294353133833 8.22740237670645 8.81493483266698 9.22683504821277 9.64048536117562 9.45002379760059 7.88738324000943 7.84696796304835 5.99277665584124 6.4562277318609 6.99090929212771 7.17687329321755 7.9667213116933 7.20545024688322 7.01484201624892 8.25751953333107 8.337125991879 7.84576467587139 6.13406513314014 0.231938800709640 0.228206442014367 0.245690057539996 0.237137084680948 0.248717855355833 0.23880916254769 0.228687800484955 0.234596843713853 0.258624900035451 0.236361707994252 0.251272428328139 0.233330329521272 0.23136285410164 0.252269687252902 0.239729760023016 0.225817217651324 0.232898438856088 0.228595898219816 0.232941827589705 1 1 + 268889 269420 269210.818 268330 269819 + gene protein_coding_gene FALSE TRUE AT1G01720.1 ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (ANAC002) (ATAF1) [Arabidopsis Thaliana] (GB:Q39013;GB:Q9LQ85); similar to ANAC032 (Arabidopsis NAC domain containing protein 32), transcription factor [Arabidopsis thaliana] (TAIR:AT1G77450.1); similar to NAC-domain protein 18 [Brassica napus] (GB:AAP35054.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 1.33721988517372 14.0563078064601 2.55110728893813e-08 0.000397411493470782 11.9435781943164 15.5452506698968 1.33721988517372 0.0822055138761474
AT3G08760_at 7.32603836392174 7.02629476077175 8.09248409343268 8.20618225699975 7.7843063063772 7.79657551724967 6.15707110537889 6.34769149370084 5.89437138532445 5.40092862945014 7.2558395439364 6.94284839200419 7.43089064064501 7.41098416545253 6.74754232038694 7.09579811303144 7.02065241366742 6.04903372994888 5.87376957888326 0.173022667864224 0.173844029405926 0.178641032684667 0.178091729298056 0.180202824976253 0.179472952680360 0.169362364195270 0.177246878864637 0.182061965485842 0.172752962980218 0.170440801266169 0.177701995872106 0.175119150293753 0.178651829966405 0.172276912352716 0.171747150480274 0.177222057603154 0.193077216739873 0.177107062169901 3 3 - 2658158 2658583 2658384.545 2657924 2660895 - gene protein_coding_gene FALSE TRUE AT3G08760.1 ATSIK; kinase Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G15080.1); similar to Os01g0822200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044652.1); similar to putative protein kinase AtSIK [Oryza sativa (japonica cultivar-group)] (GB:BAD73441.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 1.26339428978484 14.0383839111949 2.58504206959372e-08 0.000402672003180614 11.9378177838023 13.7006914186141 1.26339428978484 0.0645798098988594
AT3G28510_at 7.60547210333441 7.9328345769052 10.3055792154225 10.1962976595043 5.0533891457849 4.44856204755887 1.77867789736706 1.77741775176846 2.03780190426142 1.79200336874782 2.2011931485675 1.90267135944087 2.15225184194796 2.15168001883822 2.20818845210161 1.80144254962259 1.89999853953695 1.99750196207506 1.28048972197700 0.38808236512983 0.369634170901588 0.376154087357254 0.376718354570524 0.360624891756639 0.376303872643089 0.338653260824044 0.338653260824044 0.343809189916041 0.338653260824044 0.338653260824044 0.348355334318187 0.348350436857424 0.344598610054592 0.338653260824044 0.338653260824044 0.338653260824044 0.339959504061494 0.342238774865055 3 3 + 10687891 10688423 10688121.727 10686761 10688601 + gene protein_coding_gene FALSE TRUE AT3G28510.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28540.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78548.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 1.53164537687239 14.0377949461784 2.58616543611348e-08 0.000402821128329036 11.9376282478094 8.0086776242116 1.53164537687239 0.120509439726209
AT3G47010_at 4.9475057697258 4.51789627265891 2.83666716680355 2.47029235909535 2.95559751429710 3.06917477434779 3.79944218414446 3.42314392934795 5.80032320986506 5.43780840931575 4.24532230062545 4.37341421904091 3.60803706750728 3.30753576034969 4.73044622400352 3.62000310861629 3.6419521204257 3.83225095854451 5.63564558361906 0.218473098806304 0.218743909620852 0.213976700961612 0.235282506770189 0.218719300943613 0.214315780121664 0.213388250955668 0.214088521943268 0.220410512745782 0.217939025676672 0.210513442973047 0.216218788650616 0.216403782965373 0.218656088469261 0.214892056219409 0.211272989678100 0.216369069038841 0.231558330179401 0.227857797466585 3 3|0 -|/ 17327775 17328389 17328009.556 17327638 17330516 - gene protein_coding_gene FALSE TRUE AT3G47010.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47050.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47040.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47000.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to exo-1,3-beta-glucanase [Lilium lon (GB:BAD13764.1); similar to exo-beta-glucanase [Lilium lon (GB:AAR14129.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -1.52189313318873 -14.0240396101805 2.61255331088789e-08 0.000406905178170789 11.9331970207161 8.27469630671384 -1.52189313318873 0.119055444759832
AT1G61800_at 2.85871412567803 3.37953071397714 8.14589080967084 8.47078853896588 2.54268404631222 2.83810902353580 1.49713875953938 1.11106909062242 2.02176630702740 1.29837562892020 1.04248369586259 1.41836545201490 1.54533891763096 1.59804380919918 1.49286806344993 1.29778017452977 1.87741338970686 1.68401884431400 1.35453166459066 0.219149147604736 0.225527998199352 0.242741202866499 0.237677451384144 0.222180020829725 0.221660517111846 0.219512025067928 0.219498955396409 0.222195819488376 0.227125598447416 0.223117821352604 0.229072379780764 0.223220333949465 0.218165020428287 0.222318470926515 0.220104149738200 0.218596427158351 0.221496766435086 0.222742360414176 1 1|0 +|/ 22829167 22829949 22829613.6 22828105 22830439 + gene protein_coding_gene FALSE TRUE AT1G61800.1 GPT2 (glucose-6-phosphate/phosphate translocator 2); antiporter/ glucose-6-phosphate transporter glucose6-Phosphate/phosphate transporter 2 Identical to Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor (GPT2) [Arabidopsis Thaliana] (GB:Q94B38;GB:O80688); similar to GPT1 (glucose-6-phosphate transporter 1), antiporter/ glucose-6-phosphate transporter [Arabidopsis thaliana] (TAIR:AT5G54800.1); similar to glucose 6-Pi/Pi transporter [Thellun (GB:ABJ98060.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853); contains InterPro domain Tpt phosphate/phosphoenolpyruvate translocator; (InterPro:IPR004696) 1.61203472099636 13.9696272306466 2.71984270796684e-08 0.000423588303338756 11.9155815560585 5.38187242696335 1.61203472099636 0.135506792141217
AT4G21870_at 5.8291889062062 6.18294738732054 3.68560406556322 4.19386227336161 6.26055697193356 5.57333953872691 6.07710489571976 6.6106479139949 8.2063344406763 7.74262751767401 5.1298023965281 3.74455519391569 4.50168381500249 5.85330460496567 4.34292995467905 8.64835774972952 5.24815476642367 4.08245981472996 7.4816366108333 0.274465633652742 0.267397131796368 0.270987110437660 0.271366729191996 0.270925832893129 0.279976164200861 0.2738825656502 0.267397131796368 0.291019172994101 0.269376872776394 0.267397131796368 0.270759030217314 0.267397131796368 0.270716060263419 0.268079381771919 0.267397131796368 0.281247245661178 0.273031269355789 0.272109035296541 4 4|0 -|/ 11603770 11604237 11603956.3 11603580 11604343 - gene protein_coding_gene FALSE TRUE AT4G21870.1 26.5 kDa class P-related heat shock protein (HSP26.5-P) similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83716.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -1.93146252473923 -13.9679028531146 2.72332019706500e-08 0.000424102654288932 11.9150210333197 12.0537092741323 -1.93146252473923 0.184804833346873
AT3G25290_at 2.3964709689165 2.44627884375172 4.94229210195224 4.56889941098573 4.67241342116852 4.78983926408674 3.16515120593004 2.80219445131572 2.711056356869 2.62325682037836 2.48480135194498 3.23581857390653 3.52824167187701 3.38217996286883 3.03298747808825 3.97507199348175 3.9457770379565 3.46690970433087 2.67202731822057 0.213857091829782 0.217298899148980 0.223423202517132 0.226574528523828 0.222909060920895 0.245096277405025 0.22130271345226 0.216376284564508 0.2366781362176 0.220632669575953 0.219349988370734 0.220704626195505 0.213857091829782 0.215487612442265 0.223611671543745 0.219201374256736 0.232366925515123 0.220990298136959 0.213857091829782 3 3|0 +|/ 9210791 9211522 9211294.9 9210174 9211836 + gene protein_coding_gene FALSE TRUE AT3G25290.1|AT3G25290.2 auxin-responsive family protein similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G12980.1); similar to hypothetical protein 26.t00022 [Brassica oleracea] (GB:ABD65002.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) 1.37676524436034 13.9570504892524 2.74531701355262e-08 0.000427500765350414 11.9114901684453 6.7480692769948 1.37676524436034 0.0927788258809897
AT4G35770_at 10.4299616063022 10.2642642529300 7.93792047409326 7.7471066522832 11.1365458343821 10.7298695943552 7.37370276856078 7.55790523836756 9.57987014730848 8.92394865140843 6.357666726034 5.56244723368987 6.56495630959308 6.77777623800285 4.94076701362216 6.53338765483355 6.89945371993787 6.78799224893663 9.98291052736803 0.216226742854804 0.222790124023384 0.221675324532243 0.221351106933649 0.223406507597313 0.225938542911652 0.226697023713906 0.216782207973781 0.228832430427117 0.21606491476043 0.221630045428863 0.226067577199428 0.221329419770133 0.222951282255157 0.246918691034303 0.218275039409299 0.228388443612653 0.227015499224219 0.21606491476043 4 4|0 +|/ 16945085 16945935 16945427.4 16944946 16946197 + gene protein_coding_gene FALSE TRUE AT4G35770.1|AT4G35770.2|AT4G35770.3 SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. similar to senescence-associated family protein [Arabidopsis thaliana] (TAIR:AT5G66040.1); similar to din1 [Raphanus sativus] (GB:BAA20356.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -1.35555918835439 -13.9345429092434 2.79155625113548e-08 0.000434673223864306 11.9041494933285 17.0464757202141 -1.35555918835439 0.0887791747576194
AT4G38370_at 4.48995488131595 4.72358719959007 5.76800997989229 5.60946084247341 6.41694686645958 6.30801471162524 5.77225555021692 5.87697516122143 3.8410438110018 4.69023512737151 5.83094202404199 5.83388434115018 5.75318803908219 5.97766327980518 6.10438917068413 5.8483752241585 6.41143900980186 5.80683469876049 4.40556671113027 0.232168159410027 0.225167365064938 0.222418844708211 0.223519346582796 0.228772833695506 0.234671756666913 0.225490718618287 0.222883855733547 0.250255346413528 0.229268643623230 0.228024678774316 0.221338025377006 0.226438368058997 0.22330748803894 0.222970887790816 0.223454109865586 0.237256346396937 0.220119961578762 0.229724088022634 4 0|4 /|- 17970131 17970994 17970539.111 17969901 17971289 - gene protein_coding_gene FALSE TRUE AT4G38370.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to H0515C11.13 [Oryza sativa (indica cultivar-group)] (GB:CAH66037.1); similar to Os04g0224600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052277.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 1.22173624614712 13.9273835506415 2.80644129821436e-08 0.000436962910131976 11.9018094949829 10.7497113274011 1.22173624614712 0.0554191992211471
AT1G72040_at 6.54509811160059 6.6349136580353 5.28178220549411 5.58414066838522 5.51040362119331 5.52673617755829 7.38866776163462 7.45147633253917 5.65314458890711 5.88135403303841 4.63910657078597 5.0044573406938 5.17798398389592 4.36267491466335 5.34410136881713 5.35693507271921 5.79902613762289 4.69775908306092 6.32328492871637 0.252333175156924 0.251357169682792 0.246183488564451 0.248116166099487 0.246183488564451 0.258555562852931 0.250875782473123 0.255899304705095 0.250970404910896 0.246814400990321 0.255315766716756 0.248607439281316 0.246183488564451 0.246590639917349 0.254828382451656 0.246183488564451 0.255494527192908 0.250447352807139 0.247778387601848 1 1|0 -|/ 27115861 27116552 27116214 27115556 27118004 - gene protein_coding_gene FALSE TRUE AT1G72040.1 deoxynucleoside kinase family similar to unnamed protein product [Homo sapiens] (GB:BAD18437.1); contains InterPro domain Deoxynucleoside kinase; (InterPro:IPR002624) -1.21705612782479 -13.8626837100077 2.94494081252642e-08 0.000458497835102238 11.8805520210014 11.7405773550149 -1.21705612782479 0.0557276703823336
AT3G21870_at 5.28912821723124 5.61318347970471 4.56781559330098 5.10105827506663 5.16680514057983 5.20940620809503 7.62698194337173 7.65310108815021 7.83074329624097 7.51190632725884 5.45726993810609 6.66500676287579 6.2753850632886 6.19652533118362 6.731662037434 7.2714576588091 6.32696636184987 5.66736320534741 7.69908920925255 0.255485499504954 0.247253344387141 0.255421540687176 0.25890810552502 0.256514318714252 0.259149802222362 0.243360381770287 0.246904525176138 0.252912398556045 0.251000666921388 0.241982833616125 0.245871592264473 0.249739212773662 0.247571259219540 0.250508724276256 0.241982833616125 0.258930929008356 0.241982833616125 0.252100116923780 3 3 - 7703944 7704720 7704391 7703873 7704836 - gene protein_coding_gene FALSE TRUE AT3G21870.1 CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase similar to CYCP3,1 (cyclin p3,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G45080.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -1.44547622195475 -13.8578115252966 2.95566730634641e-08 0.000460138286252010 11.8789431338154 12.7807020710772 -1.44547622195475 0.108329542344494
AT2G47630_at 2.78653877425 2.47249435757664 1.48556940627239 1.72414285636555 1.87330831330277 1.81957599118977 3.44552093659749 3.87111802506881 5.40333853621922 4.70202692396374 3.60604894772734 4.86892363368639 3.20513956456249 3.40218921994077 4.38789994944512 3.10182275985292 2.18995891766692 4.17312555647730 4.92161525773064 0.258475540863222 0.253682671038588 0.261637086613649 0.257022773642773 0.260782790374422 0.256938604206091 0.256010138886292 0.255224577477259 0.272060446118367 0.268801136633561 0.253682671038588 0.263112752729883 0.259020557812847 0.261153777987461 0.255730997846227 0.253682671038588 0.256330995263652 0.256463662775897 0.259541411364059 2 2 + 19543309 19543957 19543743.909 19541573 19544084 + gene protein_coding_gene FALSE TRUE AT2G47630.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G62860.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -1.40518694277929 -13.8427845437325 2.98901877843020e-08 0.000465300553238229 11.8739737559540 6.74772465323181 -1.40518694277929 0.100842210635547
AT1G69690_at 3.69450561235271 4.36521867754399 4.88029921796817 4.51880882589582 5.53693186104544 5.25228208197337 3.90461565087016 4.09966084244885 2.78997513776757 2.68685682744954 5.82641183163241 5.46892024354758 5.32999124126302 5.79704970115202 4.75122627855137 4.74687471870196 3.75384594077498 4.69779886218632 2.84232266626193 0.263715841639909 0.258592301379329 0.258592301379329 0.264634903387470 0.260679358801443 0.267317514879455 0.260280238915476 0.261572458217556 0.275255970245277 0.273917231281773 0.269986385171175 0.258805008735347 0.258592301379329 0.267750663713883 0.264946243888869 0.260948577408632 0.264185326966991 0.260175262092005 0.271464484967952 1 1 + 26220509 26220964 26220713.818 26219887 26221514 + gene protein_coding_gene FALSE TRUE AT1G69690.1 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G47620.1); similar to TCP-domain protein [Medicago truncatula] (GB:ABE91240.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 1.65227180465832 13.8324419325574 3.01221118364807e-08 0.000468880792846659 11.8705471691632 8.44132354428859 1.65227180465832 0.144746488091758
AT1G70690_at 4.94241791904804 4.87153961076351 7.92517500406584 7.97661000382474 4.61824473248237 4.66664601856759 2.44208774672813 2.77833530022196 2.81005803783081 2.84317271406839 2.43382204889654 2.58772913742243 3.21818622693333 2.83200524650228 2.25316400111136 3.14074946645326 3.39542620707043 2.51286606834671 2.97009656970502 0.220594463986569 0.233481955215541 0.228657217655099 0.231246689277171 0.228595660449365 0.229641342545535 0.211838340316427 0.214424948152162 0.216397969793598 0.217338828618681 0.224455726970931 0.209882600922207 0.210717110403202 0.226835360788276 0.212916053174955 0.215340382527994 0.214769812597390 0.217888030649852 0.20891775747614 1 1 + 26656079 26656870 26656320.636 26655676 26657306 + gene protein_coding_gene FALSE TRUE AT1G70690.1 kinase-related similar to 33 kDa secretory protein-related [Arabidopsis thaliana] (TAIR:AT2G01660.1); similar to receptor-like protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25786.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 1.23018745267601 13.8222993449406 3.03514516716122e-08 0.000472420345268644 11.8671818398279 7.86322503740117 1.23018745267601 0.0607109688652443
AT1G20030_at 6.89289993191149 7.17045621245335 6.1918809314966 6.41433766987265 7.78094971869955 7.34084204727886 6.25574415049685 6.48244901392763 3.73396152314467 3.98391572363046 5.79633363543426 6.17564956690215 6.22365259020389 7.00615178991915 5.85707441861864 5.06551612880502 5.98920474751992 5.71442590943204 2.38082020486782 0.216836359527536 0.224778470584130 0.234087730951513 0.222642870286626 0.224015627136421 0.228526033075949 0.223469023279823 0.222636991138445 0.249282785562299 0.230321769660161 0.237698143285527 0.216836359527536 0.216836359527536 0.222957272945809 0.229414736490205 0.217706965932073 0.220068110322741 0.221227823874733 0.248033081375149 1 1 + 6946207 6946971 6946586.273 6945416 6947335 + gene protein_coding_gene FALSE TRUE AT1G20030.1|AT1G20030.2 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to Os03g0244200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049533.1); similar to SCUTL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94928.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938)|similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to Os03g0244200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049533.1); similar to SCUTL1 [Vitis vinifera] (GB:AAF06346.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 1.42194193955650 13.7739793561060 3.14704179332852e-08 0.000489805584713651 11.8510807613280 11.4885617506348 1.42194193955650 0.105494433464569
AT4G03320_at 2.66290736988486 3.28864149606673 5.33883483916182 6.39593537703298 6.45955701580187 5.93394317090584 1.22499981374718 1.37136300147174 1.47825404874567 1.74678473319439 2.37590463814268 1.88676325625137 2.35415898960623 2.30065001574709 1.45620956076326 2.10045112633397 2.44149350584484 2.17914172976575 1.43872276123176 0.256873261710642 0.269445068548790 0.292752206011065 0.276047473012961 0.269718258448651 0.280120651029764 0.272546441721287 0.267358483421894 0.260717924411282 0.259848207114579 0.256873261710642 0.260441259380515 0.256873261710642 0.256873261710642 0.256873261710642 0.260231808660631 0.265993059019543 0.260054928052497 0.258392827289556 4 4 + 1465345 1465773 1465587 1464466 1466164 + gene protein_coding_gene FALSE TRUE AT4G03320.1 TIC20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV); protein translocase similar to TIC20, protein translocase [Arabidopsis thaliana] (TAIR:AT1G04940.1); similar to Tic20-like protein [Solanum tuberosum] (GB:ABB86268.1); contains InterPro domain Chloroplast protein import component Tic20; (InterPro:IPR005691) 2.23867455109131 13.7634363570522 3.17204792600259e-08 0.000493665818723784 11.8475525559039 5.93023965244121 2.23867455109131 0.232608698077534
AT2G38010_at 7.35473511209733 7.67415583906969 4.80740279382217 5.10948173292452 5.33369140546641 5.09398902371177 7.45215737705307 7.73426986182403 7.64875338769702 7.48445842760681 7.23586463926536 8.1740635884398 6.74726378476669 7.44207562635971 7.7047871917198 7.06883469333965 6.29034273598177 7.03008974031955 7.4341847106127 0.20506061635699 0.204256432037543 0.224254825678575 0.214377739189827 0.211277869457489 0.217519298845073 0.206719236984177 0.209651571218281 0.211811203321933 0.208594161259611 0.204256432037543 0.204256432037543 0.207137185852003 0.209678208088336 0.210706310338418 0.207123696962125 0.221634366592344 0.204256432037543 0.205653428824535 2 2 + 15916258 15916915 15916654.818 15913940 15917009 + gene protein_coding_gene FALSE TRUE AT2G38010.1|AT2G38010.2 ceramidase family protein Identical to Neutral ceramidase precursor (EC 3.5.1.23) (NCDase) (N-CDase) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase) [Arabidopsis Thaliana] (GB:Q304B9;GB:Q3EBK8;GB:Q7XJQ9); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823)|similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823) -1.38924428357231 -13.7537517579983 3.19520850595155e-08 0.00049723834769618 11.8443068305995 13.6870507725776 -1.38924428357231 0.0994614231087677
AT1G72680_at 8.26560495724169 8.63456705490375 9.06887709243825 9.07110717816159 8.24101995227132 7.925502869937 4.80773961527976 4.73718639666573 4.47748492139387 4.75808912802718 4.59828901469412 5.05873556080336 5.23075458167301 5.77889869947678 5.32946537511385 5.48858824337869 5.71665343203405 5.64033388916717 4.82042025802153 0.254718972119428 0.260101465485479 0.267672708489904 0.263050722576725 0.258854458036081 0.249267644306647 0.248411106608643 0.249725423108386 0.265507303786502 0.249587341801581 0.251065711340899 0.249699253262406 0.251160067778334 0.248411106608643 0.248411106608643 0.248411106608643 0.26569841015773 0.248411106608643 0.253189454303635 1 1 - 27363025 27363752 27363447.727 27362894 27364678 - gene protein_coding_gene FALSE TRUE AT1G72680.1 cinnamyl-alcohol dehydrogenase, putative similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT4G39330.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Medicago truncatula] (GB:ABE84701.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 1.31761784045387 13.7254648505839 3.26391532571504e-08 0.000507897863834517 11.8348003744822 12.6142237822908 1.31761784045387 0.0848968134400498
AT1G75250_at 5.99944624848954 6.71811567929458 4.82760466122302 5.31888797763852 5.54012590362734 5.45450922820855 7.55073900408267 7.9443755057719 6.46629441882779 6.70126379328296 4.43842872903218 5.78174916400175 5.90152133021625 6.00681689951035 3.42362677937279 6.08836054499876 5.09933671969946 3.77501626431614 7.36154856797683 0.222383084840447 0.220934303922672 0.242624025934305 0.223198407504317 0.222644715875866 0.236033945145856 0.221580133217544 0.237857355714520 0.232748873774626 0.222327597613997 0.226296156215427 0.222362391217035 0.219623956752931 0.221938875811179 0.244373347995287 0.229889181071970 0.231769260218379 0.234994488286732 0.224901858045753 1 1 - 28248810 28249074 28248968.636 28248009 28249114 - gene protein_coding_gene FALSE TRUE AT1G75250.1|AT1G75250.2 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus (GB:2CJJ); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.77328285310219 -13.7237743050550 3.26807209257948e-08 0.000508512017605367 11.8342309846820 12.12292184967 -1.77328285310219 0.165999474622963
AT1G08840_at 3.04522518521854 3.07518544192334 2.34148229930260 2.17553450998371 2.45716705024787 2.51693971005879 3.7574742266464 3.98701541993223 4.04538747409648 3.66255969173616 3.10991238962333 3.13601400938657 2.94697119120737 2.49471200554045 2.45122110117 2.99089219050158 2.53167053845427 2.3790214192053 4.40342571800215 0.20811961233387 0.205765272902698 0.210200532473067 0.207638992757127 0.217169517990802 0.206913325369652 0.200529276135768 0.212000207791573 0.204523809206545 0.204916562014303 0.204709745000085 0.205054041324351 0.206804647010383 0.213381628602561 0.199460767234189 0.200398516896143 0.205314864334125 0.200299134228220 0.205639187313922 1 1 - 2829638 2830830 2830117.545 2829582 2838372 - gene protein_coding_gene FALSE TRUE AT1G08840.1 EMB2411 (EMBRYO DEFECTIVE 2411); ATP-dependent DNA helicase similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G03270.1); similar to OSJNBb0016D16.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE04326.1); similar to hypothetical protein MG02491.4 [Magnaporthe grisea 70-15] (GB:XP_365789.1); similar to Os04g0588200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053694.1); contains InterPro domain UvrD/REP helicase; (InterPro:IPR000212) -1.18775830750369 -13.7163792714411 3.28632300162543e-08 0.000511318995822901 11.8317386233892 6.31559105553804 -1.18775830750369 0.0503640260077507
AT1G18570_at 6.27006612800484 6.55474326455813 7.68366059589724 7.70962983970341 8.04473357123262 6.95387978389258 2.7446569670186 2.61263014173476 4.13248565828481 2.76753104208986 3.62279877338529 4.76740771696626 3.9290054360779 4.32336431008703 3.81531529851741 4.10540854664509 4.90799284042495 4.12932093493372 3.04055319678205 0.27670955988882 0.271172473428735 0.281323673731487 0.275030779261311 0.2676810263466 0.287739217709621 0.272440344116986 0.2676810263466 0.287483017111089 0.273287127568504 0.269869829350078 0.269320163679369 0.273950534073301 0.28263805255368 0.271239506055824 0.2676810263466 0.276637236809652 0.278345504553834 0.268727991437383 1 1 + 6390461 6390948 6390702 6389404 6391260 + gene protein_coding_gene FALSE TRUE AT1G18570.1 MYB51 (myb domain protein 51); DNA binding / transcription factor putative transcription factor: R2R3-MYB transcription family similar to MYB122 (myb domain protein 122), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74080.1); similar to MYB27 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29569.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.96950262771493 13.6698356421436 3.40376656630293e-08 0.00052955800238541 11.8159899962480 9.82855005209625 1.96950262771493 0.196484389149834
AT1G63720_at 3.8181076488315 4.392530275491 5.75154737159094 5.80656796656976 4.65101171832669 4.74387411153246 2.16268071872244 2.26116724441163 1.71561425405941 1.99773738335737 2.231491903174 2.07662399591275 2.86174975626545 2.46676297646930 2.30110660945757 2.61776017288968 3.32196361230402 2.74898416259889 1.88654553873850 0.256844830550588 0.253411907959991 0.257874184705117 0.257546946823596 0.245839202675842 0.253555185559751 0.244405637872270 0.263676312937786 0.248078010701265 0.245307885943885 0.244893198413232 0.249953422651056 0.250791862945826 0.246446518391986 0.245157478822833 0.243983025810364 0.255002585174956 0.243983025810364 0.245498936713219 1 1 - 23639807 23640340 23640068.909 23639519 23641192 - gene protein_coding_gene FALSE TRUE AT1G63720.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G25620.1); similar to unknown [Thellun (GB:ABJ98061.1) 1.39565091336151 13.6633453930712 3.42050268618349e-08 0.000532127602889566 11.8137854150809 6.42090477727741 1.39565091336151 0.102572178049893
AT2G26440_at 10.3759637115066 10.6015037340936 10.5054099154004 10.6169962103947 9.23521663905188 9.16838649703796 4.24599152753509 4.40743675456161 7.91116333712835 4.77190698011121 6.3269403020297 6.43389165737315 4.80057722957695 6.96216381737444 4.6871405799358 5.09150131045886 5.34449416914832 7.15510719674746 5.15022626969329 0.225620148656231 0.226737853547101 0.226734094996967 0.225916573466178 0.226166490092479 0.226993550944623 0.227609453794879 0.226978664471391 0.229609340878003 0.232289747547679 0.227031065955020 0.225620148656231 0.236602847570948 0.234028330932299 0.225620148656231 0.225620148656231 0.235802929402467 0.235495764458927 0.228323051418762 2 2 + 11255898 11256451 11256122 11254461 11256571 + gene protein_coding_gene FALSE TRUE AT2G26440.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G02810.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os06g0193200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057041.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 1.18978661036666 13.6484096188568 3.45935769174301e-08 0.000538137682527542 11.8087041368900 14.5419427379352 1.18978661036666 0.0530153837404552
AT2G25930_at 7.77401207166308 7.7106722682023 7.0982537168041 7.2386152226246 7.88640704265772 7.79465753518534 3.90323270324526 4.3346428383567 4.42678838359529 4.37415193167973 5.07865193012707 5.41893124907791 5.07437011151631 5.25042017898815 5.46888429419165 5.08949642990724 5.89550026390716 5.15943130331364 4.10174193088638 0.222214782923037 0.225731944498961 0.221069051773163 0.218536474775442 0.219426636544551 0.224467569558137 0.220413884445599 0.225581479610464 0.223320380405778 0.219818380404382 0.218536474775442 0.218536474775442 0.219435567797312 0.218536474775442 0.222090494708001 0.218536474775442 0.222054990932302 0.222527657608761 0.22490270766505 2 2 + 11069702 11070229 11069948.545 11066113 11070402 + gene protein_coding_gene FALSE TRUE AT2G25930.1 ELF3 (EARLY FLOWERING 3) Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions. Identical to Protein EARLY FLOWERING 3 (Nematode-responsive protein) (ELF3) [Arabidopsis Thaliana] (GB:O82804;GB:O04419;GB:Q8L7A2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21320.1); similar to early flowering 3 [Mesembryanthemum crystallinum] (GB:AAQ73529.1) 1.28870502351297 13.6077572649958 3.56756483449741e-08 0.000554934710006072 11.7948174741774 11.5202390759336 1.28870502351297 0.0808456048121018
AT2G34640_at 6.69743337220223 6.68668166530552 5.367732796093 5.77565812598059 6.02990761918353 5.89943787923564 6.86075468871911 6.92157940241727 6.19093395872758 6.93531343898762 4.92652323222206 5.83770021514083 5.27593974401508 5.10647440740264 5.27301347517845 5.53154110147385 4.98418064647845 5.08903233742341 7.1461791787173 0.20396743416408 0.207057197393453 0.227632337389309 0.210823055650070 0.209738023238833 0.201288127873984 0.211697095804796 0.201288127873984 0.215149870911085 0.207296799482204 0.208101682504490 0.201847118837984 0.209427859131546 0.218270823811712 0.214556849485245 0.205695502016857 0.224157086872751 0.216607988206236 0.201730533105034 2 2|0 -|/ 14589159 14589893 14589478.222 14588965 14591778 - gene protein_coding_gene FALSE TRUE AT2G34640.1 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to hypothetical protein MtrDRAFT_AC144478g3v1 [Medicago truncatula] (GB:ABE93314.1) -1.26392652879925 -13.6075703384859 3.56807080775984e-08 0.000554977733438965 11.7947534298177 12.2851612788393 -1.26392652879925 0.0748830292238073
AT1G23090_at 5.78199463566354 6.57775694959863 4.27846735910313 4.36951547630534 3.27333977893682 2.92915738051154 4.7628517612157 5.16015522502731 6.13417187790816 5.30330181505361 4.15105618379127 4.01165276857616 3.06103013917276 3.91432062940787 3.24166440970188 4.20737153484428 3.33868094471773 4.06812847131106 4.77167207927434 0.264426639916187 0.245754618681373 0.245903339045436 0.252328364527223 0.249761267647565 0.251330688794263 0.251084947217305 0.257119157649534 0.275187810631033 0.258071264109906 0.245754618681373 0.245754618681373 0.254492667634895 0.250918628868277 0.256658813660898 0.245754618681373 0.251627745271569 0.247767739329419 0.245754618681373 1 1 - 8185230 8186248 8185866.727 8184941 8189053 - gene protein_coding_gene FALSE TRUE AT1G23090.1 AST91 (SULFATE TRANSPORTER 91); sulfate transporter Encodes AST91 mRNA for sulfate transporter. Identical to Probable sulfate transporter 3.3 (AST91) (SULTR3;3) [Arabidopsis Thaliana] (GB:Q9SXS2;GB:O49307); similar to SULTR3,4 (SULTR3,4), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G15990.1); similar to SULTR3,2 (SULFATE TRANSPORTER 3,2), sulfate transporter [Arabidopsis thaliana] (TAIR:AT4G02700.1); similar to SULTR3,1 (SULFATE TRANSPORTER 1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G51895.1); similar to plasma membrane sulphate transporter [Brassica oleracea var. acephala] (GB:CAG28416.1); similar to sulphate transporter protein [Sporobolus stapfianus] (GB:CAA65536.1); similar to Sulphate transporter [Medicago truncatula] (GB:ABE80289.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -1.75594004985854 -13.5998087612697 3.58914888530316e-08 0.0005582203261312 11.7920926261465 9.21779818376313 -1.75594004985854 0.165793140558345
AT1G78180_at 5.14040530220439 4.99012041016207 3.84600549673503 3.80898103194792 4.20969261424239 4.20485327526819 6.23241815937531 5.97512817294228 6.0416775674614 6.38982917314596 5.39140043999323 5.97528020158905 5.60331172364358 5.55623157011741 5.93113003825712 5.5985702767762 4.34638396553416 5.54588898946976 6.43751004649951 0.266054132943493 0.252123405637866 0.274150340941746 0.281418587630415 0.252673218465977 0.271821793570329 0.251491124153907 0.261528351842278 0.258882658111694 0.251722823804819 0.252057204935837 0.253602775558789 0.257923915849963 0.260565064552083 0.251491124153907 0.255668782179995 0.275998520167244 0.256412113591189 0.255802577172781 1 1|0 +|/ 29422602 29423231 29422991.8 29421806 29423533 + gene protein_coding_gene FALSE TRUE AT1G78180.1 binding similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G64970.1); similar to 80C09_21 [Brassica rapa subsp. pekinensis] (GB:AAZ41832.1); similar to Os03g0191100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049231.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -1.18164125915951 -13.5911770625735 3.61274902730133e-08 0.000561854728725903 11.7891299739838 10.6925490143805 -1.18164125915951 0.0519676891560299
AT2G26560_at 11.0109154121175 11.2969866790766 11.5121079061466 11.5637705193366 11.5127340574651 11.1015657588416 6.7207779677928 6.39998420925551 8.6089078747703 5.70229659547924 7.10526247334194 7.43548488820523 7.76011130361563 8.07308760725352 5.02286936517458 6.3912204605239 7.73893970771178 5.95658633678516 5.84295074179208 0.276983771554246 0.278621959382387 0.280652229959949 0.277496838160608 0.283303976195194 0.279771268685436 0.271050649385956 0.262465516760043 0.280096119290647 0.26657414271236 0.268520185612744 0.266568129062156 0.264288542371498 0.263455828413691 0.277729338809872 0.262623935926293 0.275217551979814 0.272097294009378 0.275481161490215 2 0|2 /|- 11301003 11301617 11301348.556 11300847 11302884 - gene protein_coding_gene FALSE TRUE AT2G26560.1 PLP2 (PHOSPHOLIPASE A 2A); nutrient reservoir encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. similar to PLA IVA/PLP1, nutrient reservoir [Arabidopsis thaliana] (TAIR:AT4G37070.2); similar to patatin-like protein [Gossypium hirsutum] (GB:AAX99411.1); contains InterPro domain Patatin; (InterPro:IPR002641) 1.39138601193306 13.5846457781320 3.63071847090006e-08 0.000564613029409669 11.7868857536942 16.9666038163409 1.39138601193306 0.103323025879671
AT3G09580_at 7.63307229843207 7.78527251779125 5.91071988385082 6.08495543876081 7.35725132455923 6.90723268536692 8.2247404360773 8.31055249636904 9.28639770855893 8.41604134837697 7.62937316135614 7.68393627801742 7.29284569577578 7.37101768045684 8.19740777754558 7.89062621619534 7.26450086767239 7.37688156170824 8.70688565040284 0.169179555435093 0.174758340204222 0.195473895217381 0.196779466595914 0.182999237407027 0.188837516112529 0.169028118685173 0.182978453751118 0.189182890612129 0.170763913018595 0.17135039256516 0.173901644725749 0.169028118685173 0.178070276056225 0.169028118685173 0.174907406155986 0.186849811848686 0.172570376376212 0.174917255567095 3 3 - 2942692 2943183 2942897.727 2942509 2944083 - gene protein_coding_gene FALSE TRUE AT3G09580.1 amine oxidase family protein similar to HEMG2/MEE61 (maternal effect embryo arrest 61), oxidoreductase/ protoporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT5G14220.1); similar to putative oxidoreductase, FAD-binding [Oryza sativa (japonica cultivar-group)] (GB:BAC07074.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -1.31907709248579 -13.5577744122462 3.70567808588771e-08 0.000576232942355539 11.7776298197862 15.4724405804612 -1.31907709248579 0.0888165732970663
AT1G29050_at 5.92757580721587 5.9366109916182 9.26593672961754 9.18926554409732 8.74391370478854 8.4067023638059 7.96911866300396 8.13259378816684 6.60744167382379 6.82683644019474 7.11544412350675 5.86615594863676 7.7517479747389 7.51744897433986 5.21739722976563 8.01019797887909 8.70716726386871 7.45708468160332 6.56650556943238 0.251823175180365 0.234005796386754 0.246609579340003 0.243352627458189 0.252490652011320 0.254684442498026 0.239314434597909 0.246816211552531 0.247503734437601 0.233560561835115 0.234177348416607 0.240420091659858 0.230326207601714 0.239142779480847 0.255083093154516 0.236006942866591 0.233126720297573 0.232690783408062 0.23102195467356 1 1 - 10136363 10136992 10136625.182 10136216 10139194 - gene protein_coding_gene FALSE TRUE AT1G29050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34070.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 1.22419120025492 13.5372812244398 3.76397581696079e-08 0.000585260599779232 11.7705463096922 14.8825939072398 1.22419120025492 0.0662136430944607
AT3G27880_at 4.83415196994432 5.52295846583576 6.14566371675246 6.32318012890191 7.1555425128991 6.6492815316509 4.28867222075922 4.37615912435701 3.46825975437633 3.26948674454181 4.48699766461218 4.71267071326745 5.09056501698694 5.09112559372439 4.99768843051392 4.91509636159035 4.72951010252827 4.41757258553693 3.17036149688187 0.224208354653427 0.224846913224416 0.219276424672778 0.229169921825746 0.223796475234160 0.234915543528588 0.221368085871456 0.226273696232666 0.233367309916375 0.226843589202229 0.219276424672778 0.226499721843578 0.219276424672778 0.219748768376108 0.220830982445884 0.219276424672778 0.231869895824537 0.225676722869582 0.224343078538746 3 3 + 10339816 10340364 10340033.909 10339449 10340673 + gene protein_coding_gene FALSE TRUE AT3G27880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23710.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84838.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 1.6576910853277 13.5159713775628 3.82565567836077e-08 0.000594812944871532 11.7631578875429 9.71587919581845 1.6576910853277 0.151847022073222
AT4G35630_at 8.82244340162714 9.02763400058772 10.0352206683302 10.1756958120973 8.57663668801221 7.8451089806665 6.75300536918398 7.14058776555928 5.64886317402033 6.32943857359186 8.09827902934435 8.73117919389627 7.13924038242599 7.98034506149699 8.45598958690854 8.1919402371191 7.27677272360561 8.13401621971525 5.84625536371704 0.206389850828883 0.204191555148868 0.217705821912822 0.216575656487291 0.206301290770521 0.211092928365343 0.208439331338789 0.199597431548111 0.233688848570850 0.212898636856924 0.203622216718277 0.198499317415545 0.207201512520186 0.198499317415545 0.202297928695514 0.198499317415545 0.224575271046390 0.208986925759689 0.214411632560696 4 4 + 16904926 16905431 16905137 16904064 16905727 + gene protein_coding_gene FALSE TRUE AT4G35630.1 PSAT (phosphoserine aminotransferase); phosphoserine transaminase Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway. Identical to Phosphoserine aminotransferase, chloroplast precursor (EC 2.6.1.52) (PSAT) [Arabidopsis Thaliana] (GB:Q96255); similar to phosphoserine aminotransferase, putative [Arabidopsis thaliana] (TAIR:AT2G17630.1); similar to phosphoserine aminotransferase [Medicago truncatula] (GB:ABE77665.1); contains InterPro domain Phosphoserine aminotransferase; (InterPro:IPR003248); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) 1.64084958512065 13.4913498322032 3.8982922757889e-08 0.0006060675001169 11.7545924090616 15.5182862564699 1.64084958512065 0.149588650450091
AT4G24700_at 5.9330520124483 6.32641343346508 5.64877417772423 5.78887434824707 6.02074409589892 6.11780964053144 8.91577078530335 8.85836934496528 8.01637606491716 8.46956338765344 7.65286571722556 7.59092644106587 7.5392116939358 7.4670373231708 6.85478799854862 8.59246258234113 7.56722717259657 6.98522850520557 8.76973814014589 0.241510215942305 0.243372897684491 0.257229846137819 0.266266195388260 0.247700328570994 0.268543399631584 0.244951324657737 0.24661517291571 0.259199112579001 0.247347668231162 0.242722897929396 0.238454592409263 0.24399630431051 0.240535932809834 0.261230814951118 0.238454592409263 0.261288401059941 0.249535376774562 0.254734858418837 4 4 - 12744826 12745154 12744975.182 12744632 12745323 - gene protein_coding_gene FALSE TRUE AT4G24700.1 similar to Os02g0595200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047311.1) -1.25084579837800 -13.4681404713609 3.96813690877903e-08 0.000616886563838788 11.7464897797702 14.6761147932397 -1.25084579837800 0.0748504754680812
AT1G65480_at 7.70938337707333 8.10802210622357 9.67247431672818 9.83477740982257 10.3584672626662 10.1419384055546 8.8741440268791 8.96493324304815 3.80204428113001 4.1967434613545 2.88032551664155 1.88650346749406 6.02353014550737 4.83759526664914 2.74560980878218 7.73383234668855 8.36680005297779 4.4441686297022 3.63035033111424 0.249545983970566 0.251823797275113 0.257741261704067 0.259953688155218 0.257243422810671 0.256948984500305 0.254686928615946 0.256560853199957 0.267832321115857 0.257514539591934 0.25189224891139 0.254221940480555 0.258402844641587 0.256071089154288 0.251590636629381 0.249545983970566 0.252298928872004 0.252395040017901 0.254719262925907 1 1 + 24335218 24337244 24336475.909 24335091 24337597 + gene protein_coding_gene FALSE TRUE AT1G65480.1 FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. FT is a target of CO and acts upstream of SOC1. Identical to Protein FLOWERING LOCUS T (FT) [Arabidopsis Thaliana] (GB:Q9SXZ2;GB:O04467); similar to TSF (TWIN SISTER OF FT), phosphatidylethanolamine binding [Arabidopsis thaliana] (TAIR:AT4G20370.1); similar to flowering locus T-like protein [Vitis vinifera] (GB:ABF56526.1); contains InterPro domain Phosphatidylethanolamine-binding protein; (InterPro:IPR001858); contains InterPro domain PEBP; (InterPro:IPR008914) 1.28810497841298 13.4203115551096 4.11639804873479e-08 0.000639894076675824 11.7297047056368 13.5786050245853 1.28810497841298 0.0848466665186775
AT4G34250_at 4.25766926485441 4.80938394124717 1.13874816025489 1.15073544023271 1.64473728298482 2.25157276297596 3.44795516678368 3.72232502189651 2.42919589000331 2.29126682433521 1.79492554676304 2.09425199775678 1.82368760836201 1.97494255842435 2.38417079168947 1.80813800406332 1.669005959691 1.79437459645437 3.28963305448059 0.254976426347076 0.245612159624374 0.229066429908154 0.233824257803113 0.230033005045916 0.233146079319619 0.242816599560176 0.240639746071663 0.232307339653651 0.230006183268505 0.238893174803531 0.224124675570919 0.227813779983557 0.224333758802695 0.227009559351923 0.224124675570919 0.231053312380152 0.229307401781760 0.224916546772725 4 4 + 16395651 16396158 16395886.182 16394712 16396497 + gene protein_coding_gene FALSE TRUE AT4G34250.1 fatty acid elongase, putative Identical to 3-ketoacyl-CoA synthase 16 precursor (EC 2.3.1.-) (KCS-16) (Very-long- chain fatty acid condensing enzyme 16) (VLCFA condensing enzyme 16) (KCS16) [Arabidopsis Thaliana] (GB:Q9SYZ0); similar to FAE1 (FATTY ACID ELONGATION1), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G34520.1); similar to fatty acid elongase, putative [Arabidopsis thaliana] (TAIR:AT2G15090.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to beta-ketoacyl-CoA synthase [Brassica napus] (GB:AAK64213.1); similar to beta-ketoacyl-CoA synthase [Isatis tinctoria] (GB:AAX58615.1); similar to 3-ketoacyl-CoA synthase [Physaria fendleri] (GB:AAU05611.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -1.63248986356125 -13.4182635117248 4.12287962033649e-08 0.000640860408185104 11.7289833235067 5.09687540807389 -1.63248986356125 0.149675867730788
AT4G01460_at 6.28407101795878 7.18591150954952 2.9117373398041 3.53043621391894 5.23547733340778 4.81262203363804 6.95703842857777 7.25381220635393 7.05678544861389 6.84192995182385 6.39743040128207 7.88241578881578 5.87725126286501 5.61452103847437 6.89118007847945 6.15968672028656 4.13028616531399 5.55169798586592 8.020017978397 0.233037793280101 0.233668707385727 0.24962160084609 0.237866449427939 0.230199140747491 0.235580878042269 0.230199140747491 0.235367747530316 0.247157993682158 0.234891046827324 0.233744117083102 0.23622965202657 0.230199140747491 0.236393923552344 0.232336176310746 0.230199140747491 0.246737160683458 0.237499035886972 0.230199140747491 4 4|0 +|/ 621717 622632 622147.7 620759 622943 + gene protein_coding_gene FALSE TRUE AT4G01460.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G61950.1); similar to Os10g0376900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064473.1); similar to helix-loop-helix DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19748.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -2.02041291992824 -13.4181449732027 4.12325510607114e-08 0.000640877541136637 11.7289415640321 12.2060398302933 -2.02041291992824 0.209316454883625
AT2G33830_at 12.0013466028687 11.9134902581965 11.4611359191388 11.4526760905527 12.6100362439539 12.2294165083931 7.9366984995076 7.32307384660202 8.88233249585757 7.20678424233912 8.95585735443389 8.08958336587907 9.03154473795137 8.98346793387506 8.54244811014069 7.9013942004621 9.52469658775069 8.81640110580477 7.58169221578574 0.193588714810454 0.191560724688876 0.196264144802070 0.191185193430341 0.191910675490639 0.200421479771138 0.183708951983851 0.188088590226857 0.188440153072655 0.192763346397617 0.189713858898983 0.187244736921371 0.184646235807625 0.187096325708905 0.183708951983851 0.18990777158409 0.188107240870372 0.190651155894684 0.1865854889774 2 2|0 -|/ 14317000 14317334 14317127.25 14316560 14317427 - gene protein_coding_gene FALSE TRUE AT2G33830.1|AT2G33830.2 dormancy/auxin associated family protein similar to DRM1 (DORMANCY-ASSOCIATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G28330.1); similar to auxin-repressed protein [Brassica oleracea] (GB:AAL67436.1); contains InterPro domain Dormancyauxin associated; (InterPro:IPR008406) 1.49253420596283 13.4076305401661 4.1567092217668e-08 0.000646035747246996 11.7252345730688 19.176456159084 1.49253420596283 0.125890209205427
AT1G02220_at 2.53689428771534 2.75822222758568 5.08785964957711 4.88979828171708 3.26692935785788 3.38522213902612 2.33543692776340 2.48048121493681 3.79227319352457 3.48063986020004 4.73950633442725 3.83605710029304 3.4291232017781 4.56277990197323 3.70676939422794 4.2555451538789 4.16099176328297 4.71325352909493 2.98669670694207 0.229851403784225 0.221615071524842 0.227163266570199 0.22415345974907 0.224372703438124 0.232228492154414 0.223178967037759 0.223670666625739 0.223820812163543 0.218146700881434 0.224838066830683 0.224369559180381 0.223423741535714 0.220097818055569 0.222240307191986 0.218738917030489 0.225334807832536 0.222546219496157 0.217479131440589 1 1 - 428913 429716 429408.364 428814 430647 - gene protein_coding_gene FALSE TRUE AT1G02220.1 ANAC003 (Arabidopsis NAC domain containing protein 3); transcription factor similar to ANAC048 (Arabidopsis NAC domain containing protein 48), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04420.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); similar to Os08g0157900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061034.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 1.19266353484578 13.3990911491482 4.1840963899484e-08 0.000650250419961881 11.7222196785458 7.14029211956831 1.19266353484578 0.0607531288165878
AT3G13610_at 2.56067421365475 2.89228160039037 7.89615818414323 7.77362810364372 1.54785429021492 1.69806157433657 0.785962238686768 1.11308278333295 0.583477304356924 1.30611281231773 0.738553598580965 0.585965713122172 1.01499970522608 0.376556706655678 0.821984213839663 0.973855112003145 0.398912670024127 0.460592997597896 1.04139619560716 0.251023355211271 0.258011021047944 0.27996029342481 0.282144687631060 0.252146744237255 0.248774477479671 0.248426879511112 0.256896342864703 0.248852656719534 0.254728739419168 0.248426879511112 0.248787471879662 0.268029150933823 0.248426879511112 0.248463987581693 0.250274205795336 0.248426879511112 0.250611498522585 0.248426879511112 3 3 + 4449941 4450598 4450320.818 4449381 4450818 + gene protein_coding_gene FALSE TRUE AT3G13610.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G55290.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE88764.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 1.29267874063617 13.3554048937883 4.32730757728449e-08 0.000672463597510009 11.7067364123897 4.10767438707965 1.29267874063617 0.0873106928756414
AT3G63200_at 4.28743540484176 4.1602632810201 2.05165491982949 2.08373848313411 2.36973663829269 2.49122013785217 6.89932401363372 7.18757641861816 5.29822494489544 6.48593517800987 7.41787990673905 8.42194517386584 6.98927879308979 7.14768731262792 7.71510623357394 5.6797804935832 5.24251923556541 6.42218164132294 5.78673510498404 0.256717100338033 0.262265702252463 0.273167386309865 0.273483757011729 0.276018612517669 0.276035390045143 0.257566358910707 0.266306164230428 0.261452821259526 0.256717100338033 0.264029760307559 0.268009027592551 0.258134190742221 0.256717100338033 0.266015705992590 0.256717100338033 0.256717100338033 0.256717100338033 0.256717100338033 3 3 + 23357678 23358313 23357986.182 23356877 23358539 + gene protein_coding_gene FALSE TRUE AT3G63200.1 PLA IIIB/PLP9 (Patatin-like protein 9); nutrient reservoir similar to PLA IIB/PLP6 (Patatin-like protein 6), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT2G39220.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) -1.18098998095921 -13.3441427204321 4.36508471344206e-08 0.000678290513621762 11.7027286744208 10.3096248745323 -1.18098998095921 0.0586983955140735
AT2G28400_at 4.76102046641694 5.5224115134528 7.10090247739502 7.42870454700471 7.5720227077904 7.09029020886019 4.21055362714463 4.33677603768535 4.06604833895181 3.65254559990902 4.98052668227642 3.24407286045370 5.28161819402218 4.47163979628374 3.94800575681313 4.66604020120967 5.99132231228318 4.04684427432045 3.39335046499733 0.231976337720623 0.231976337720623 0.243765426417024 0.240136186737527 0.240314790422665 0.237364500224021 0.238126823502584 0.231976337720623 0.244003277850241 0.240114977049932 0.237327988018561 0.23689266696101 0.238264126425102 0.242770406859970 0.234583438252909 0.237612049652711 0.246437905337419 0.237447481764343 0.236632985372277 2 2 - 12155680 12156048 12155861.909 12155381 12156129 - gene protein_coding_gene FALSE TRUE AT2G28400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60680.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 1.73253343292137 13.3423930987657 4.37098563336239e-08 0.000679163747711849 11.7021054589598 10.1442053120490 1.73253343292137 0.16735100213155
AT4G33700_at 7.03468139877502 7.58541818570833 7.29613258086319 7.22221229293581 7.5519299711065 7.86190411341196 5.06799662434503 4.68894505712565 4.00241085184724 4.88009465233026 6.00557803857824 5.53458792775588 5.81670604691965 6.00067982763333 6.3061875830689 5.98990922030545 6.28219032897936 5.90832569970647 4.23992210709982 0.213927281126841 0.198892833440627 0.211926801765153 0.201265890189783 0.201517481835884 0.201930882561675 0.201136551551133 0.213177316676799 0.226351655012545 0.207790031857040 0.201357773275124 0.204868831579479 0.205883066267764 0.210830427259577 0.218064631974364 0.198892833440627 0.204745415275960 0.198914640540778 0.202107135517290 4 4|0 -|/ 16176550 16177445 16176946.8 16176279 16179484 - gene protein_coding_gene FALSE TRUE AT4G33700.1 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G14520.1); similar to CBS [Medicago truncatula] (GB:ABE86592.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) 1.49758123505842 13.3388510726804 4.38295832418385e-08 0.000680980234828445 11.7008432959555 11.9659840886394 1.49758123505842 0.128170232717050
AT1G69200_at 4.5882929874556 4.89696458273027 3.85743006790266 3.60275614010691 3.78136751743526 3.56603053729184 5.18392738340164 5.34160621081023 3.99353010681285 4.12426579254159 2.80014897234784 2.90710117420044 2.70796241092728 2.21130466812602 3.60423308621889 3.65245278858876 3.77982954977083 2.90682001808611 4.82536472393385 0.224249878480142 0.223549663306461 0.223203251600743 0.227704620093461 0.216534390217512 0.221609006416615 0.230732062228437 0.221877714507764 0.223504215239719 0.225353004527077 0.232269481871859 0.227629851342361 0.219806614648243 0.230761097188333 0.216534390217512 0.216534390217512 0.220848947428427 0.222162968201921 0.216534390217512 1 1|0 +|/ 26021346 26021906 26021578.8 26019687 26022156 + gene protein_coding_gene FALSE TRUE AT1G69200.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G54090.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT81682.1); contains InterPro domain PfkB; (InterPro:IPR011611) -1.27197850815571 -13.3242454137344 4.43270594464254e-08 0.000688665195559665 11.6956317480282 8.04510615737315 -1.27197850815571 0.0832408386925125
AT1G15310_at 4.51152788032478 4.42060497449965 6.06038401793977 5.82463091637743 5.55917323619044 5.58288643596911 4.54151667504 4.51273978905772 4.42935126220812 4.24729336724256 5.41194632150505 5.01087845580557 5.39807601544542 5.36690525314836 5.10183001109273 5.49326282881624 6.14236955354662 5.47658651688828 4.5709444274685 0.217037824473143 0.217037824473143 0.221753694070562 0.232231714947815 0.224652590015327 0.231804956641011 0.22201531588069 0.222540511102355 0.226249945798504 0.226263349024006 0.229425486444246 0.228684108321854 0.217037824473143 0.226841063543106 0.224225537760827 0.217037824473143 0.219923502922272 0.219745761045176 0.221594785057101 1 1|0 -|/ 5269192 5269839 5269415.125 5269014 5272053 - gene protein_coding_gene FALSE TRUE AT1G15310.1 ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A); 7S RNA binding / GTP binding / mRNA binding 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins Identical to Signal recognition particle 54 kDa protein 1 (SRP54) (SRP-54A) [Arabidopsis Thaliana] (GB:P37106); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49966); similar to signal recognition particle 54 kDa subunit (GB:AAA66200.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain Signal peptide binding (SRP54) M-domain; (InterPro:IPR004125); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle protein SRP54; (InterPro:IPR006325) 1.13477008622331 13.2957877992251 4.53140578318605e-08 0.000703953888417953 11.6854452354338 10.0472304349269 1.13477008622331 0.0442007916763998
AT2G16700_at 7.60276299097327 7.53959378094226 8.52622385704962 8.16189745166138 8.60725898068537 8.18268698792091 6.42355661772315 6.27515059919654 6.09071376349634 5.97747001721488 7.32923600083083 7.05527956993557 6.59543364811042 6.88553726838717 7.13216530071364 6.91258093775159 6.80262342250607 7.56104981680518 5.16811002993138 0.205827045521646 0.205827045521646 0.215374339278179 0.206304476723753 0.208570821597025 0.214271105386161 0.215449732237261 0.218608452945034 0.224637806735962 0.21793064802505 0.207876589379469 0.211457909019321 0.208848344996900 0.212631641371012 0.207045769995271 0.205827045521646 0.212707869672041 0.206344541448983 0.226013619940989 2 0|2 /|+ 7252010 7252523 7252170.875 7251690 7252823 + gene protein_coding_gene FALSE TRUE AT2G16700.1 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding Encodes actin depolymerizing factor 5 (ADF5). Identical to Actin-depolymerizing factor 5 (ADF-5) (AtADF5) (ADF5) [Arabidopsis Thaliana] (GB:Q9ZNT3;GB:Q9SLE7); similar to actin binding [Arabidopsis thaliana] (TAIR:AT4G34970.1); similar to Os03g0243100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049525.1); similar to actin depolymerizing factor [Elaeis guineensis] (GB:AAF60173.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 1.34902889876819 13.2934766008139 4.53952596794336e-08 0.000705169963860321 11.6846160507695 14.0547261661912 1.34902889876819 0.100760296265398
AT1G06180_at 1.54751585269228 1.94398738798785 3.62860483106691 3.69751708240974 2.43943204727939 2.63260818936367 0.931257321742603 1.02409192616096 1.18512538377892 1.09226315618408 1.37858103227726 2.02230140759352 2.26811727968431 1.46466126281088 1.90903522845698 1.90074442478773 2.79660304483931 2.09628514789993 1.37286565869875 0.225962708763853 0.225223731588177 0.224283232670186 0.227243411282912 0.220352939509538 0.225409222604826 0.225405233222972 0.223703595342665 0.224036949441563 0.224961484146368 0.220352939509538 0.220352939509538 0.220352939509538 0.225164316289007 0.223161881859676 0.222714186956357 0.240431341061780 0.222913885874601 0.220352939509538 1 1 + 1889816 1891064 1890652.636 1889407 1891157 + gene protein_coding_gene FALSE TRUE AT1G06180.1 ATMYB13 (myb domain protein 13); DNA binding / transcription factor member of MYB3R- and R2R3- type MYB- encoding genes similar to AtMYB14/Myb14at (myb domain protein 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31180.1); similar to transcription factor MYB39 [Zea mays] (GB:CAJ42203.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.25030855968691 13.2871743534174 4.56174880063751e-08 0.000708576441203024 11.6823535643545 3.82877308138675 1.25030855968691 0.0789011350128886
AT1G30520_at 6.97454186341517 6.82429103025578 5.60954972760206 5.35340962993066 6.06513851637159 6.20211146988274 7.66138866725985 7.49767011941188 8.93739258697582 8.37312353575444 7.82343945158165 8.35843781780372 6.75597244558503 7.47502388398534 8.63260604134265 7.49752350835749 6.70358703703156 7.33497412204452 8.25257011656563 0.185296866282138 0.175205771857561 0.181917696920716 0.179170897918513 0.190182514181673 0.180047642216647 0.176776513191471 0.180935892893938 0.174860171278863 0.180090958589540 0.176527412765218 0.177981884958662 0.181295350181043 0.183704074361755 0.174946089429104 0.174860171278863 0.177643957824459 0.174860171278863 0.179802550534196 1 1 + 10812769 10813503 10813094.545 10810966 10813613 + gene protein_coding_gene FALSE TRUE AT1G30520.1 acyl-activating enzyme 14 (AAE14) similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT4G19010.1); similar to Acyl-CoA synthetase (ISS) [Ostreococcus tauri] (GB:CAL50517.1); similar to Os08g0130400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060922.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -1.19012689605219 -13.2740812272598 4.60829635773377e-08 0.00071576059028321 11.6776464293909 14.5703747704654 -1.19012689605219 0.0632889121315438
AT2G47270_at 3.75057390538703 4.04751737701813 5.14090186782457 5.56157939613494 7.7500595243437 7.37558146081181 2.91838287760058 3.50685103779105 3.58530382291612 2.43880846848334 3.07536940574016 2.25360058197058 3.30767217410491 3.21307618578644 2.50621587235216 4.06818394290758 4.13685578811338 3.49543357076062 2.76621042251177 0.259603380924756 0.260082957579328 0.264336747564877 0.272422321444819 0.274219233965975 0.282162256043942 0.258840187446227 0.258840187446227 0.275297152141864 0.268713130971634 0.265512276961506 0.261032184323743 0.258840187446227 0.260986302548414 0.266981584637125 0.26016030759854 0.26532497273883 0.262040620409041 0.258840187446227 2 2 - 19418816 19419036 19418924.455 19418630 19419221 - gene protein_coding_gene FALSE TRUE AT2G47270.1 transcription factor/ transcription regulator contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 1.6140713158714 13.2490835194785 4.69860600961679e-08 0.000729740499353584 11.6686340982396 8.10001018662433 1.6140713158714 0.150036856961754
AT2G47890_at 8.63119663327982 8.881260302629 8.32904487269747 8.54847873831764 9.31522977780294 8.88572256918025 7.37066970382399 7.07502334269534 4.59233764217465 5.61050291738464 6.71823517786039 6.6180659299438 7.49349533712656 7.67281561362437 6.36042188531721 6.49791148604904 7.48581414526072 6.57514635301636 4.67317059207494 0.269368015647345 0.267280965256714 0.266271139073538 0.268967452510038 0.271858484634473 0.280718607534141 0.270555002837208 0.27421839060282 0.297242108124965 0.273290543611364 0.266271139073538 0.266271139073538 0.270959810746822 0.266271139073538 0.266271139073538 0.266271139073538 0.274268029224852 0.27198239362179 0.281625240322142 2 2 + 19615733 19616518 19616027.636 19615066 19616715 + gene protein_coding_gene FALSE TRUE AT2G47890.1|AT2G47890.2 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 13 (COL13) [Arabidopsis Thaliana] (GB:O82256;GB:Q7GAB9); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT3G21880.1); similar to Os03g0351100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050114.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20080.1); similar to Os07g0667300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060574.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315)|Identical to Zinc finger protein CONSTANS-LIKE 13 (COL13) [Arabidopsis Thaliana] (GB:O82256;GB:Q7GAB9); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G28050.1); similar to Os03g0351100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050114.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20080.1); similar to Os07g0667300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060574.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 1.37457467551964 13.2404575224849 4.7302141705781e-08 0.000734602260690778 11.6655164542897 14.3227825550047 1.37457467551964 0.107037670330475
AT2G34300_at 4.84106252038342 5.04613380381078 3.26015586756993 3.04946823695079 3.07304498841879 3.5825521550806 6.17677118424607 6.1271930616474 6.82242045623105 6.64398048104042 6.8860866931033 7.07534473402876 5.7579946978046 6.74646411159523 6.80163587262465 6.07910806791891 4.69085594867052 6.62106355313894 6.70814552684281 0.220885267766233 0.215536481034511 0.218726381312407 0.223249817084215 0.223467338202191 0.218670967087 0.217638663973983 0.215049456199505 0.228544933727570 0.212021931314603 0.212054249644197 0.215381963596168 0.216768378997594 0.220630568081543 0.216554697203696 0.212021931314603 0.224468178307906 0.213576829515895 0.214039113093137 2 2 - 14480998 14481669 14481317.818 14480744 14484509 - gene protein_coding_gene FALSE TRUE AT2G34300.1|AT2G34300.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G51070.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G29470.2); similar to dehydration-responsive protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96619.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22395.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.34950722101385 -13.2312489360925 4.76421230747059e-08 0.000739834529227107 11.6621838517411 10.9231317428795 -1.34950722101385 0.102160758468118
AT4G01430_at 4.80140358657153 5.44098221145334 8.36936077686066 8.50857482429824 8.64452521888355 7.32031976917534 6.52116186052671 6.50858087394873 2.70609957287393 3.16938974492989 5.09272158011636 3.00062002025031 5.11579685124831 4.83348934901716 2.75082778205839 4.23114200619238 7.17294508317219 6.50978583808752 1.9586663678229 0.297237960666800 0.290666685264703 0.299339059095247 0.292389615192552 0.287622515004682 0.289438654003649 0.298650566102647 0.291861388648636 0.313590728668858 0.288852367889407 0.291667040118112 0.287622515004682 0.287622515004682 0.296931565016999 0.295614834644356 0.287622515004682 0.292095092020373 0.287622515004682 0.306541940195244 4 4|0 +|/ 586767 587822 587375.889 585598 588029 + gene protein_coding_gene FALSE TRUE AT4G01430.1|AT4G01430.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G01070.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os02g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045606.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G01070.1); similar to Os06g0107600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056569.1); similar to Os02g0103500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045604.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1) 2.30984692470248 13.2068210300755 4.85569355498623e-08 0.000753992095218262 11.6533213003201 10.7392642863698 2.30984692470248 0.255636342508663
AT1G79440_at 8.46318582863986 8.4177847502486 8.41884668463024 8.05713056901883 9.44383634145266 8.59226017772842 6.74005525725505 5.89504225037033 4.56742347481407 5.33244022484242 8.58284581859112 8.28004042189925 7.96602952074628 8.41680422140475 7.90353118783682 6.61832809511843 7.25093155846356 7.61533886898561 5.11611021512854 0.214533708732321 0.213454991789343 0.216573381546439 0.215476918552998 0.218521040243657 0.223171451112740 0.218592062918157 0.223507461412625 0.230661817280909 0.222503054745193 0.217083533032327 0.214281614721506 0.213454991789343 0.221671078940554 0.220493495490674 0.214203295023567 0.226253732260839 0.213454991789343 0.226917489891043 1 1|0 -|/ 29887768 29888989 29888364.667 29887103 29892303 - gene protein_coding_gene FALSE TRUE AT1G79440.1 ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE); 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004). Identical to Succinate semialdehyde dehydrogenase, mitochondrial precursor (EC 1.2.1.24) (At-SSADH1) (NAD(+)-dependent succinic semialdehyde dehydrogenase) (Aldehyde dehydrogenase 5F1) (ALDH5F1) [Arabidopsis Thaliana] (GB:Q9SAK4;GB:Q9SEK4); similar to ALDH2B4 (ALDEHYDE DEHYDROGENASE 2), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G48000.1); similar to putative succinic semialdehyde dehydrogenase [Azoarcus anaerobius] (GB:ABK58629.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Succinic semialdehyde dehydrogenase; (InterPro:IPR010102); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 2.03645399747406 13.1799371452651 4.95858403772421e-08 0.000769919343537438 11.6435305544841 14.4207956573642 2.03645399747406 0.216983826156305
AT2G36050_at 4.421355312604 4.40297136451846 1.75952944961165 2.34428234618422 2.60478484965356 2.57298622415769 2.85805532621156 2.59066116123137 6.94479257842801 4.25368214827539 5.53727269354698 4.20393155651483 3.01019882179185 3.78524685114184 3.91467515840068 3.49095678261163 2.23177384722303 4.27839174059555 4.80291750174034 0.283498461636461 0.277198362904675 0.269776074937745 0.274562070500352 0.280998159220216 0.272851110985674 0.268711397431696 0.277378569859412 0.303237360971483 0.268711397431696 0.278454788141105 0.269510074195208 0.273661797211276 0.268711397431696 0.269270293378646 0.271556929442355 0.283245617475466 0.268711397431696 0.270067747594751 2 2 - 15142962 15143377 15143205.545 15142651 15143828 - gene protein_coding_gene FALSE TRUE AT2G36050.1 ATOFP15/OFP15 (Arabidopsis thaliana ovate family protein 15) similar to ATOFP18/OFP18 (Arabidopsis thaliana ovate family protein 18) [Arabidopsis thaliana] (TAIR:AT3G52540.1); similar to H0913C04.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86167.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) -1.38755327587126 -13.1508281241578 5.07266873659282e-08 0.0007875825480434 11.6328853356378 7.51450492475133 -1.38755327587126 0.111453748160325
AT1G80840_at 3.93206741742265 4.55358956728061 9.24739251912502 9.04924730901122 2.65728808920131 3.08022398171087 1.82773085480871 1.48371187153068 2.92723419988216 1.67482803214637 2.29818020276652 1.94852471351384 2.32147053381728 2.17864389358219 2.29044079527007 2.65223043155605 1.96073537475004 2.18848123782887 1.757882120932 0.292070263785493 0.297103361392110 0.295672243738876 0.293184629492997 0.293597798577644 0.292370207553963 0.292211424221528 0.295053194050082 0.307325997552194 0.284273832287809 0.28020073023502 0.283439593477213 0.281092120046832 0.28020073023502 0.293195785065591 0.28799638815458 0.285954973448061 0.284830437271243 0.280572604716478 1 1|0 +|/ 30389537 30390198 30390023.429 30388583 30390391 + gene protein_coding_gene FALSE TRUE AT1G80840.1 WRKY40 (WRKY DNA-binding protein 40); transcription factor Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. Identical to Probable WRKY transcription factor 40 (WRKY DNA-binding protein 40) (WRKY40) [Arabidopsis Thaliana] (GB:Q9SAH7); similar to WRKY18 (WRKY DNA-binding protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT4G31800.2); similar to transcription factor wrky [Brassica napus] (GB:ABA71354.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.58455999695011 13.1485329267271 5.08178468056007e-08 0.00078894707165695 11.6320440206821 6.65381637569761 1.58455999695011 0.147124469664698
AT2G45470_at 7.40986110661013 8.03121502488739 3.26220818497912 3.23848491585202 4.20773995985814 4.51537847173425 8.11516324745913 8.44796145124454 8.03186919530525 8.28510138002297 9.98123207699634 10.3268758929010 9.21210243067927 9.43384357222761 10.3538621325747 9.14442710793312 7.39972976787266 9.188184953975 8.25425546474476 0.188985392217788 0.192699867281444 0.216042904860091 0.202774604392925 0.199034060129245 0.223165412303731 0.177913294836711 0.185018769542823 0.190433016980424 0.18278177154852 0.178304209678510 0.183568242045024 0.179187171152631 0.191475117410526 0.183822261822077 0.177913294836711 0.200554998019002 0.177971916434410 0.184401727619902 2 2 - 18749979 18750374 18750172.909 18749614 18751185 - gene protein_coding_gene FALSE TRUE AT2G45470.1 FLA8 (Arabinogalactan protein 8) Identical to Fasciclin-like arabinogalactan protein 8 precursor (AtAGP8) (FLA8) [Arabidopsis Thaliana] (GB:O22126;GB:Q56ZW9;GB:Q8L9B1;GB:Q9FR46); similar to FLA10 (fasciclin-like arabinogalactan-protein 10) [Arabidopsis thaliana] (TAIR:AT3G60900.1); similar to fasciclin-like protein FLA5 [Triticum aestivum] (GB:ABI95395.1); similar to Os04g0574200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053617.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.50273688128689 -13.1375327706702 5.1257223208251e-08 0.00079571713308489 11.6280078824939 14.6887220062877 -1.50273688128689 0.133155368332178
AT1G51270_at 5.61535943862754 5.33144074114202 4.17170576789421 3.86580273859993 3.72077334793375 3.65009015432399 5.84779854779261 4.77529584191266 4.76558827403388 5.28612552414667 3.10390808167533 2.47680617428346 3.27684108072358 2.81111445533255 2.58565168420081 3.24849343972731 3.42915048164271 2.53798387490338 5.60582429406246 0.184837469048332 0.183600779035034 0.184608694959247 0.181973371815128 0.181111735403018 0.184827212063143 0.190119026241651 0.184102546452866 0.183521190537705 0.200553562287012 0.180774156570961 0.182292977746935 0.182078847422555 0.180435642811673 0.182145163476051 0.182093009491933 0.181924702516061 0.191800217504862 0.197655866330589 1 1|0 +|/ 19012189 19013973 19013276 19011656 19014379 + gene protein_coding_gene FALSE TRUE AT1G51270.1|AT1G51270.2 structural molecule| similar to vesicle-associated membrane protein, putative / VAMP, putative [Arabidopsis thaliana] (TAIR:AT2G45140.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Major sperm protein; (InterPro:IPR000535)|similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G45000.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Major sperm protein; (InterPro:IPR000535) -1.9129081726003 -13.1372520422296 5.12684901533012e-08 0.000795840772649694 11.6279047923299 8.69874483384941 -1.9129081726003 0.199534703331235
AT2G36410_at 7.81130653683162 7.92433440111774 7.45324171928471 7.71704674257052 8.81342554726341 8.5959006714087 6.45067647572084 6.18445182716995 6.75297175162944 5.21777806210242 8.16579915841898 7.26887726468398 7.9027596033914 7.76165418068415 7.07729901011309 6.73525887590062 7.30960271101374 6.72012364885304 5.90676778293167 0.235602620634283 0.236485757293231 0.235942642245969 0.236140263860359 0.237218902777235 0.237081845816504 0.24961413244631 0.249350222628983 0.246519999074208 0.249634152229659 0.230720017437029 0.242604477476363 0.244967168809921 0.230345567897059 0.242225691685878 0.236310595552407 0.256274719639209 0.233117919186389 0.232995403708237 2 2 + 15286130 15286867 15286364.091 15285848 15287767 + gene protein_coding_gene FALSE TRUE AT2G36410.1|AT2G36410.2|AT2G36410.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52920.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52920.2); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033) 1.2303553171665 13.1349782854938 5.13598458761699e-08 0.000797207527689908 11.6270696563723 14.2822201595977 1.2303553171665 0.0775008697963111
AT2G35550_at 3.29122087952671 3.45217867412515 4.32632690750292 4.63795549429666 4.70494440814305 4.67128147778552 3.05002826817457 3.26238705844094 2.15664245414293 2.62445332473631 3.06979400725528 3.03690437255447 3.74823496476995 3.68034085703306 2.98082771368409 3.88024253258668 4.20811056813767 3.36011590004213 2.43848381524224 0.240984011379866 0.239610055631554 0.24457594134872 0.243398757198506 0.240987679285447 0.251459792786632 0.249998574187096 0.240309160234941 0.252709968476539 0.238728381084207 0.247600722392568 0.240107088083631 0.240640166050348 0.235740371194125 0.235982146808559 0.235740371194125 0.243044879821646 0.235740371194125 0.249842562522783 2 2 + 14937105 14937649 14937398.818 14936360 14937971 + gene protein_coding_gene FALSE TRUE AT2G35550.1|AT2G35550.2|AT2G35550.3|AT2G35550.4 ATBPC7/BBR/BPC7/BPC7 (BASIC PENTACYSTEINE 7); DNA binding / transcription factor|ATBPC7/BBR/BPC7/BPC7 (BASIC PENTACYSTEINE 7) similar to BPC2 (BASIC PENTACYSTEINE 2) [Arabidopsis thaliana] (TAIR:AT1G14685.1); similar to barley B recombinant [Hordeum vulgare] (GB:CAD45251.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 1.20510909249964 13.1258830041248 5.17270519392566e-08 0.000802855573149201 11.6237261976233 6.87558934394031 1.20510909249964 0.0711945365079654
AT3G26210_at 9.51528822649074 9.9079978437946 10.0880980860407 10.2140369627356 9.43563509902703 9.10506798891932 5.17785130972207 5.37701210305867 6.87435027315763 4.63231731501459 4.94826901238269 6.44856755289031 4.5543480190623 6.74345900829842 3.72664646120616 6.61087273138885 6.5002477127558 5.69868353868273 4.20932575013176 0.252481699289153 0.250911338886774 0.253175395503537 0.255129045209253 0.250245667724451 0.256473719630689 0.258196168475163 0.249325680893920 0.268118306229381 0.264095329673658 0.254927797760684 0.256463220785434 0.253903406874867 0.254108102617277 0.260925426354113 0.250057144489215 0.268176015269621 0.253017252540500 0.266907369731151 3 3 - 9594709 9595125 9594876.818 9594369 9596480 - gene protein_coding_gene FALSE TRUE AT3G26210.1 CYP71B23 (cytochrome P450, family 71, subfamily B, polypeptide 23); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B23 (EC 1.14.-.-) (CYP71B23) [Arabidopsis Thaliana] (GB:Q9LTM0;GB:Q6AWT7); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.31569723594812 13.1058040800230 5.25478444074556e-08 0.000815542545203712 11.6163290982485 14.0488990528160 1.31569723594812 0.0977446506001864
AT2G38465_at 3.87158680108353 4.22612471087049 4.80370587011796 4.45238703824304 4.74080034644355 4.90482725088647 1.39014309311144 1.53028943811419 1.69208400016471 1.36542008396497 2.4881453602687 1.29703758851478 1.99256928587945 2.63441415867481 1.77621382237363 1.8538201922976 1.81702374324677 2.29966055364539 1.12547054495233 0.298012104762963 0.299418888206309 0.299823499715835 0.308371359980918 0.303141832450816 0.298012104762963 0.305612424226452 0.2996965445309 0.298166574636007 0.298185452946586 0.298012104762963 0.301578272573006 0.298012104762963 0.298012104762963 0.304710748268992 0.298082824144482 0.299567591984547 0.307234396832227 0.301541365740205 2 2 - 16113471 16113863 16113704.636 16113341 16113991 - gene protein_coding_gene FALSE TRUE AT2G38465.1 unknown protein 1.29821491368991 13.0998301383989 5.27947725925495e-08 0.000819322075863776 11.614124027658 5.44707580084549 1.29821491368991 0.094099080052256
AT1G52410_at 7.35776091474567 7.64272456295704 5.34449589763591 5.31268039204278 7.03143588475547 6.35204785374596 4.06643563931936 4.13712088905576 2.33502308103539 3.70033962409089 4.80823036137058 6.17598178001121 6.11398830301708 6.02988222758713 6.1757972788721 6.44392963881137 5.57777572290787 5.62474066181525 3.38720215855992 0.270685948779649 0.270367329835182 0.260832205504789 0.26242056802478 0.264141682543967 0.271698857651298 0.267501071112516 0.260832205504789 0.310998075073585 0.269488671073267 0.260832205504789 0.260832205504789 0.260832205504789 0.27093085240508 0.264954519000408 0.260832205504789 0.271701047639709 0.260832205504789 0.279715271991102 1 1 + 19528435 19528881 19528637.818 19524397 19529293 + gene protein_coding_gene FALSE TRUE AT1G52410.1|AT1G52410.2 TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding|TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. similar to (TSA1-LIKE), unknown protein [Arabidopsis thaliana] (TAIR:AT3G15950.1); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_814574.1)|similar to (TSA1-LIKE), unknown protein [Arabidopsis thaliana] (TAIR:AT3G15950.1); similar to PREDICTED: similar to Viral A-type inclusion protein repeat, putative [Danio rerio] (GB:XP_685984.1) 1.46854514888129 13.0788481183767 5.36720891141473e-08 0.000832883478873337 11.6063637159629 10.4104106049628 1.46854514888129 0.128198470771039
AT1G70985_at 3.39946704627672 3.40870760705892 3.19560628539192 3.40931281351524 2.74221417109899 3.08253207997308 6.46913802432775 6.87729807536698 4.55390026878207 5.29142118570641 4.04251298509242 4.29783352634545 5.1869946607289 4.60681181074516 3.50617787199846 4.79463025623838 5.61473595547756 4.01500287549923 5.76371877983156 0.267179964361017 0.258550185834476 0.262739339778461 0.263487614003954 0.258581924756119 0.26408771582156 0.300789953114662 0.293712716458881 0.27095463717314 0.262151357565332 0.258550185834476 0.258550185834476 0.260231135090839 0.262369868561981 0.261293186337926 0.259573774293191 0.268922020648843 0.259897199010005 0.272004790323911 1 1 - 26768449 26768812 26768632.545 26768334 26768947 - gene protein_coding_gene FALSE TRUE AT1G70985.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G23050.1); similar to Os01g0112000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041810.1); similar to OJ1116_C07.3 [Oryza sativa (japonica cultivar-group)] (GB:BAC00686.1); similar to Os09g0332100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062903.1) -1.31308113471855 -13.0148940879846 5.64453654644795e-08 0.000875862735912329 11.5825599596192 8.92858496497905 -1.31308113471855 0.0991358220585357
AT3G13950_at 6.92125042974238 7.21114420674773 9.51934750409208 9.60210842563365 7.54794838426134 6.72440565744117 2.31848588276485 2.50464547750991 3.27842455903655 2.97205854540574 2.40367376101520 2.42427399105479 2.74162443226444 3.00173445567677 2.22089063628439 3.16115260051544 2.88394791591744 2.89614003329267 3.03995988553681 0.368276187475536 0.376516877136811 0.362288064915409 0.372828938919954 0.365636699433106 0.371422515090317 0.339295108665455 0.338977742101942 0.332854492140863 0.332854492140863 0.335806925214141 0.338295446096558 0.334537427089440 0.332854492140863 0.338627447776483 0.332854492140863 0.341284996398016 0.332854492140863 0.338094577983823 3 3 + 4604165 4604496 4604336.091 4604156 4605432 + gene protein_coding_gene FALSE TRUE AT3G13950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13266.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80572.1) 1.61471819596272 13.0055004109425 5.68656594786892e-08 0.000882327572471342 11.5790444883941 9.45041402514697 1.61471819596272 0.155148673501581
AT3G16660_at 9.6020008611594 9.87358921055506 6.63629353444025 6.76431791089439 8.13516354656569 7.68765029889835 8.4846068307346 8.89645891322664 8.90722305668959 7.71779120133742 6.92749843203216 7.90413704558208 7.20618798259946 7.73067081718095 8.32795099222886 6.41433984119907 7.36604938209827 7.43367887260255 8.27884684382203 0.268215518213849 0.262079463603444 0.268556561087703 0.250393369643876 0.267558715090177 0.271554537921646 0.280708843733976 0.261726256188227 0.268183871581420 0.260556706280649 0.250393369643876 0.250393369643876 0.250393369643876 0.261081039674321 0.250393369643876 0.26539066326081 0.250393369643876 0.265587985413005 0.250393369643876 3 3 + 5676929 5677103 5677024.143 5676835 5677921 + gene protein_coding_gene FALSE TRUE AT3G16660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16670.1); similar to phylloplanin [Nicotiana tabacum] (GB:ABE03627.1) -1.39789024723926 -12.9619219974314 5.8860434716587e-08 0.000913219644627847 11.5626712344937 16.1175607406293 -1.39789024723926 0.117376577993747
AT1G28190_at 4.04834504991368 4.71860767482824 5.63553059461778 5.50862956847985 5.3757318117749 5.38758162018165 1.59210742279264 1.85297646034304 1.93251883467162 2.14090904678283 2.1609951913235 2.60712824271057 2.68966239179231 2.63801670463594 1.99097300856296 2.37168923417214 2.87506834177567 2.38998502781015 1.96217684916864 0.315714454674676 0.315174305515581 0.345283852256303 0.329705967488168 0.329741128044175 0.319557048736323 0.311720769703994 0.314022744446903 0.317262382495637 0.311720769703994 0.314274374471961 0.311720769703994 0.311720769703994 0.311720769703994 0.311720769703994 0.311720769703994 0.311720769703994 0.312619625199319 0.311720769703994 1 1 - 9847044 9847567 9847399.909 9846871 9847910 - gene protein_coding_gene FALSE TRUE AT1G28190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12340.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94082.1) 1.43871538555051 12.8992566398679 6.18633756128316e-08 0.00095974840925747 11.5389391855703 6.50359278106094 1.43871538555051 0.126406799177789
AT2G46680_at 7.30312345112499 7.79069905803847 9.78735852011069 9.92462339443888 9.87826967451942 9.23114935041943 8.59614842436642 8.4405573033327 3.47836301957099 5.03565596805958 3.91245142181081 4.77127141598088 6.10916958375043 4.89155463088118 3.90899673152085 5.82492902048735 8.57979757723195 5.7772676158364 3.69157860616658 0.246039292416896 0.239624774282579 0.239603753646604 0.241663880193539 0.244874294046011 0.239581041513492 0.242174358464361 0.239577012886562 0.239577012886562 0.240326231334299 0.24520688294089 0.243437316873859 0.241789889837048 0.239577012886562 0.247962233864597 0.239577012886562 0.246234949626913 0.242370172338235 0.241399508849685 2 2 - 19172847 19173630 19173240.273 19172473 19174019 - gene protein_coding_gene FALSE TRUE AT2G46680.1|AT2G46680.2 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription factor|ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response. Identical to Homeobox-leucine zipper protein ATHB-7 (Homeodomain transcription factor ATHB-7) (HD-ZIP protein ATHB-7) (ATHB-7) [Arabidopsis Thaliana] (GB:P46897;GB:Q9SLF9); similar to ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61890.1); similar to Leucine zipper, homeobox-associated; Homeodomain-related [Medicago truncatula] (GB:ABE91214.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 1.53805769703911 12.8765383386428 6.29928175868497e-08 0.0009772075792248 11.5302804835458 13.6392222875205 1.53805769703911 0.144740848546489
AT2G25730_at 8.30903461792916 8.21007498071804 8.31803087445935 8.11226441801815 9.07408927587582 8.38024326145747 5.96041524565002 5.99921645333528 5.5991531752763 5.69321346663483 7.06758788785784 6.9731506665036 7.116841774583 7.03588910353511 6.79545844106487 6.48602877279551 7.76005774740229 6.98065041121618 5.24952418569051 0.203450854076729 0.200333014795772 0.202428115852922 0.209102354169365 0.211783522150252 0.216879235816256 0.210103450177661 0.202739694877522 0.214802196730945 0.207363215893276 0.207168491564655 0.203022512320954 0.202502458455056 0.201383837422784 0.202718586471462 0.199899117995925 0.208077996196158 0.208963524451650 0.206021055628741 2 2|0 -|/ 10963863 10965393 10964412 10963380 10979807 - gene protein_coding_gene FALSE TRUE AT2G25730.1 binding / heme binding similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83627.1); similar to Os01g0593000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043457.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83626.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Globin-related; (InterPro:IPR012292); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 1.43223306223191 12.8325561354771 6.52435900442585e-08 0.00101205856876654 11.5134335259897 14.0658819958406 1.43223306223191 0.126585750982647
AT4G39950_at 10.3265531613668 10.3128187210006 10.6974972389070 10.7583391699264 9.4380028940168 8.79976946622912 8.07377292237023 8.0368207297642 4.16560017593567 4.95211619484237 5.95549504508323 7.19734348806515 6.99544780406729 6.79282679948629 6.11937587727714 6.87365845544033 5.64848096038185 7.06683338246872 4.71975417335097 0.265175201901411 0.26788295593894 0.273294057813558 0.278538025922722 0.266264221355916 0.275148500450810 0.265620379868100 0.273609189183483 0.285430626172985 0.27143622697036 0.266961625075273 0.265552223169362 0.269755978667305 0.275511222663879 0.265175201901411 0.265175201901411 0.276445891031196 0.271527879137780 0.276425313404127 4 4 + 18526885 18527253 18527067.636 18525240 18527573 + gene protein_coding_gene FALSE TRUE AT4G39950.1 CYP79B2 (cytochrome P450, family 79, subfamily B, polypeptide 2); oxygen binding Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. Identical to Cytochrome P450 79B2 (EC 1.14.-.-) (CYP79B2) [Arabidopsis Thaliana] (GB:O81346;GB:Q9SMR0); similar to CYP79B3 (cytochrome P450, family 79, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G22330.1); similar to cytochrome P450 [Brassica napus] (GB:AAN76810.1); similar to Cytochrome P450 79B1 (GB:O81345); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.35230167690088 12.8306057168366 6.53454046711613e-08 0.00101357257185438 11.5126838652117 15.1522832419027 1.35230167690088 0.111159538426231
AT2G30150_at 5.48237553774139 5.98786591239016 3.74418093634739 3.92030719346257 4.33282786969205 4.05754270738519 6.97555231013552 7.55805389892016 5.44768476351625 6.9146012798031 6.03427062127353 6.3041584465179 5.9079580675439 5.91444962944651 6.30209328093239 6.45772542447378 4.98793105634005 4.95043964964417 6.9403611864149 0.217520862954888 0.214936863442537 0.215838783126903 0.214678937053131 0.21540691767614 0.220009056935635 0.228614675783533 0.227653486627748 0.217521765566762 0.218156836896418 0.215747407518188 0.21710269894771 0.215109047039249 0.216457888757693 0.219079293785635 0.215446056374368 0.219447441953806 0.220906304083774 0.217957744613898 2 2 + 12882666 12883152 12882955.455 12881783 12883199 + gene protein_coding_gene FALSE TRUE AT2G30150.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30140.1); similar to Os01g0805400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044560.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); similar to Os05g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055920.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.53204235464911 -12.8158677505883 6.61203505041167e-08 0.00102552663631885 11.5070121106617 11.4031353033924 -1.53204235464911 0.144956499280777
AT3G57260_at 12.3941815327638 12.3381129941830 13.233185867469 13.1136930447253 12.3040846305566 12.0234942428690 6.6351399120525 6.35310472072326 8.15564263078694 5.97742674118195 4.86564713051821 5.61723525638598 7.27972706985346 6.75721505766169 5.40946773569664 7.14359969328049 7.33085868404282 5.51175109077704 7.2190771516137 0.250189158430355 0.248094531201510 0.255577041599976 0.253461572887501 0.247571710476258 0.256295308668756 0.245703215997845 0.252148179558676 0.250216600835546 0.24400698986333 0.245009908347079 0.244251094696368 0.241670576990231 0.241670576990231 0.245473347630151 0.244692776106767 0.242433522440901 0.251769729435984 0.248808976387603 3 3 - 21199717 21200255 21200040.455 21199496 21200838 - gene protein_coding_gene FALSE TRUE AT3G57260.1 BGL2 (PATHOGENESIS-RELATED PROTEIN 2); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds beta 1,3-glucanase Identical to Glucan endo-1,3-beta-glucosidase, acidic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta- glucanase) (Beta-1,3-endoglucanase) (Pathogenesis-related protein 2) (PR-2) (Beta-1,3-glucanase 2) (BG2) [Arabidopsis Thaliana] (GB:P33157;GB:Q8LD94;GB:Q9M2M1); similar to BG3 (BETA-1,3-GLUCANASE 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57240.1); similar to beta-1,3-glucanase 2 (GB:AAA32755.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 1.18026759836191 12.8015244746829 6.68841379645694e-08 0.00103730609569251 11.5014802091914 17.7277845628201 1.18026759836191 0.0725379902429977
AT2G38470_at 8.03824200595944 7.90657577704302 8.85829566877068 9.14399257355428 8.40197496100631 7.91527740574254 4.74428553871906 4.30079118789334 6.24605050076936 4.86195356891352 5.74743996669754 6.81707153659264 4.87459645337675 5.67518763614036 5.6439623263519 5.62635486910491 5.90790524130271 6.68177688592625 4.94294446446648 0.266874271155344 0.265941795065722 0.269290750345605 0.271312821964778 0.268968024193427 0.274318688937901 0.265941795065722 0.265941795065722 0.266928641854682 0.265941795065722 0.273168807540527 0.265941795065722 0.265941795065722 0.277417379546745 0.274884948068555 0.265941795065722 0.266552026521684 0.278807933905525 0.272808319390936 2 2 + 16117036 16117583 16117364.273 16115537 16117844 + gene protein_coding_gene FALSE TRUE AT2G38470.1 WRKY33 (WRKY DNA-binding protein 33); transcription factor Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Identical to Probable WRKY transcription factor 33 (WRKY DNA-binding protein 33) (WRKY33) [Arabidopsis Thaliana] (GB:Q8S8P5); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.1); similar to WRKY transcription factor 33 [Capsella rubella] (GB:AAP82932.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.42694110562579 12.7995167910922 6.69918107440945e-08 0.00103890900101942 11.5007049383725 13.0247309110793 1.42694110562579 0.126284910268982
AT1G61580_at 5.89714549587448 6.03598939239871 6.6125118421491 6.80602162582669 6.14295148445845 6.31734608809539 5.24974413865235 5.41860982281208 4.74761234364961 4.67140837685219 5.54676481421187 6.16189214055519 6.15817169959133 6.00092630758736 6.90938248933668 5.89343449990893 6.41956043119762 6.00766567019731 4.65120878624345 0.17797710878858 0.175651103204954 0.196155592629483 0.179978960678759 0.177040904108835 0.179022982669550 0.18133851060875 0.185049258846108 0.198759743514213 0.193700482381010 0.178121395630507 0.178113226787491 0.187303561445076 0.179845554340496 0.175438491601905 0.182876189965063 0.180807525860644 0.185011546153345 0.182128356271074 1 1 - 22724546 22725135 22724838 22724357 22726817 - gene protein_coding_gene FALSE TRUE AT1G61580.1 ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2); structural constituent of ribosome Identical to 60S ribosomal protein L3-2 (ARP2) [Arabidopsis Thaliana] (GB:P22738;GB:Q9SY92); similar to ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G43170.3); similar to ribosomal protein (GB:AAA66161.1); similar to ribosomal protein L3 [Lycopersicon esculentum] (GB:AAR17783.1); similar to ribosomal protein L3A [Nicotiana tabacum] (GB:AAQ96335.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) 1.13324190101144 12.7992091665896 6.70083253848524e-08 0.00103909810174291 11.5005861279726 11.4736906156943 1.13324190101144 0.0588520114359516
AT2G22860_at 5.49917027684117 5.90326975352943 5.87880886886369 5.84810043954025 4.01213869688385 3.88981176289707 2.17354528872704 2.30564695173301 3.37632149640167 2.35606065350025 5.20195834947942 3.98439860640388 3.59011594789095 3.75773208629759 4.36677990732189 4.40717872528025 3.81291675996962 5.32346957469767 2.82627080241389 0.27338535776439 0.265949237970715 0.269644182261428 0.271869595148143 0.264576901458944 0.26770963458374 0.280277319418186 0.277560282419456 0.268318747500234 0.272846977540254 0.262348228938249 0.262997933310937 0.264703227504431 0.262866134518010 0.263243303524014 0.264558890505046 0.262348228938249 0.264223911627704 0.267122049477754 2 2 + 9744783 9745122 9745007.455 9744687 9745378 + gene protein_coding_gene FALSE TRUE AT2G22860.1 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR); growth factor Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. Identical to Phytosulfokines 2 precursor (AtPSK2) [Contains: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] (PSK2) [Arabidopsis Thaliana] (GB:O81003;GB:Q7PCC1); similar to ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR), growth factor [Arabidopsis thaliana] (TAIR:AT4G37720.1); similar to TPA: TPA_exp: putative phytosulfokine peptide precursor [Brassica napus] (GB:DAA00277.1); contains InterPro domain Phytosulfokine; (InterPro:IPR009438) 1.19474565078381 12.7861961751009 6.77109869880124e-08 0.00104992656423612 11.4955552426657 8.01803803593007 1.19474565078381 0.0767423043889904
AT3G10300_at 4.86490714805535 5.22974266937548 5.11176679068459 5.07670259236544 5.59705483463968 5.08747459400858 3.37424772551206 3.73719571237914 3.61332042770286 2.80110117633779 5.03989672058286 4.59920827067877 5.72203152928943 5.69985046993374 4.38275976236216 5.35899293165475 5.10778943409279 4.07768939760451 2.80711850538022 0.272048315223851 0.273487421142654 0.276937129980090 0.268913388168706 0.274150801660615 0.273962309756998 0.272805261783851 0.278203476393268 0.288947468023462 0.277578254204 0.272789106271822 0.270194984351307 0.268913388168706 0.269056706183848 0.272722678055598 0.268913388168706 0.282182720557307 0.285151448358056 0.270927289944840 3 3 + 3186884 3188037 3187342.9 3186326 3188306 + gene protein_coding_gene FALSE TRUE AT3G10300.1|AT3G10300.2|AT3G10300.3|AT3G10300.4 calcium-binding EF hand family protein|calcium ion binding similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G04170.1); similar to Os11g0140600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065711.1); similar to EF hand family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21877.1); similar to Os12g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066106.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G04170.1); similar to Os11g0140600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065711.1); similar to EF hand family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21877.1); similar to Os12g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066106.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G04170.1); similar to Os11g0140600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065711.1); similar to Os12g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066106.1); similar to putative cysteine protease [Pisum sativum] (GB:CAB63845.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 1.42070350023932 12.7820214582935 6.79381015670777e-08 0.00105338026479754 11.4939391960389 8.79607351721012 1.42070350023932 0.125478083266209
AT2G42280_at 7.4723267191948 7.25380091090449 7.7152798083976 8.01029667928154 8.94080589842908 8.36479190733174 5.17564972303524 5.01885589827146 5.93474453772823 5.35492863799489 6.1594057550392 6.04653159925956 6.71535657215955 6.14209887696684 6.01457622158673 6.68808812489411 6.70565155177764 6.64530817623289 5.58154866749618 0.179984963300146 0.177340758057171 0.183627873902036 0.189431588375689 0.197983282521268 0.210028866668527 0.185178051662731 0.198479875410921 0.189861713242001 0.189277116183538 0.181389103794010 0.179064169412483 0.180938766221544 0.190745155840180 0.184642345764879 0.179092206933953 0.188544216671935 0.179999980639317 0.177562189944778 2 2 - 17618991 17619464 17619222.636 17618263 17620597 - gene protein_coding_gene FALSE TRUE AT2G42280.1|AT2G42280.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51140.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to Aldehyde dehydrogenase; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94655.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51140.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to Aldehyde dehydrogenase; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94655.1) 1.39676087792081 12.7647848800735 6.88846132050245e-08 0.0010679870431307 11.4872561347693 13.2506598051787 1.39676087792081 0.121282173575232
AT2G44240_at 9.83575521664144 9.91368185478777 9.17458896388581 9.3876258823881 7.41016542159102 7.25890114214597 1.27874277247377 1.56659625191445 1.82671027402342 2.18101942044060 1.56886368364701 1.58406410664784 1.70259519272309 1.72935461212376 1.45769644910133 1.60034975901788 1.57680081861317 1.90919205389919 1.91753185725585 0.301775461896592 0.311189522910843 0.309925988862907 0.308729278856830 0.319046048357431 0.325232804064301 0.294801405894566 0.290018147179966 0.290018147179966 0.295659375710916 0.297386001755671 0.2953927615285 0.293047566028370 0.295151822537600 0.297643013536977 0.292554156025359 0.291492443431990 0.298397834796258 0.290018147179966 2 2 + 18298477 18299251 18298838.091 18296900 18299421 + gene protein_coding_gene FALSE TRUE AT2G44240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44220.1); similar to Os03g0807100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051640.1); similar to Os07g0573400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060067.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) 1.16257686455670 12.7634727018494 6.89572533469823e-08 0.00106904429863827 11.4867466615136 8.78635807241768 1.16257686455670 0.0686130201777546
AT4G17500_at 4.18154096630355 4.89139543610046 6.78693123290892 7.10012239239766 4.96212760275373 4.49466007757196 2.1692598880929 2.30525675246571 3.02048192898159 2.03150889529573 2.77597959897320 2.70458000061089 3.08873698752150 3.66542453431733 2.55465728585494 4.21864966346537 3.73474855695745 3.09250933857374 2.37868213391466 0.272378159032635 0.272255718433051 0.282947389459896 0.304232781464866 0.263534866686036 0.267666012389962 0.266113195278926 0.259730268140024 0.259730268140024 0.268887828507747 0.259730268140024 0.265850011064427 0.259730268140024 0.268084354426403 0.262809815147535 0.263854863481111 0.270278803723095 0.262859416555153 0.265902930152935 4 4 + 9759662 9760189 9759888.091 9759337 9760353 + gene protein_coding_gene FALSE TRUE AT4G17500.1 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1); DNA binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Identical to Ethylene-responsive transcription factor 1A (Ethylene-responsive element-binding factor 1A) (EREBP-1A) (AtERF1) (ERF1A) [Arabidopsis Thaliana] (GB:O80337;GB:Q93Z36;GB:Q9SUK1); similar to ATERF-2/ATERF2/ERF2 (ETHYLENE RESPONSE FACTOR 2), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT5G47220.1); similar to ethylene responsive element binding factor, putative [Brassica oleracea] (GB:ABD64951.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.60080841269386 12.7342263221981 7.05980761405588e-08 0.00109441137633094 11.4753652262826 7.46456265949851 1.60080841269386 0.158513075386105
AT4G14270_at 10.8994238826955 11.0022190591756 11.2326131057907 11.1744316795455 11.8820697599172 11.5945888133126 9.9565137263242 9.94037589475804 8.4720571570329 9.30159535946095 10.0687955241324 9.98752810130187 10.5460896745575 10.1581739956906 9.8298610779139 9.93408665957086 10.5457543897328 10.3039539144987 9.13510350697275 0.12765041074509 0.125337562644436 0.13485103510017 0.126903114300398 0.125836634148218 0.133748414499765 0.127521030625438 0.123161488428221 0.156117503188842 0.129204042717921 0.128265108633120 0.130009074673959 0.122438779737058 0.123296321738033 0.124847679905707 0.126987995547303 0.131665519456322 0.130952179540252 0.132248072878885 4 4 + 8218540 8219005 8218716.455 8218373 8219317 + gene protein_coding_gene FALSE TRUE AT4G14270.1|AT4G14270.2 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. similar to ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) [Arabidopsis thaliana] (TAIR:AT2G41430.2); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE94464.1)|similar to ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) [Arabidopsis thaliana] (TAIR:AT2G41430.2); similar to ERD15 [Capsicum annuum] (GB:ABB89735.1); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE94464.1) 1.11174388746124 12.7254697740047 7.10975624912711e-08 0.00110208331617719 11.4719478198155 20.5309623693551 1.11174388746124 0.0538580064498888
AT1G02470_at 4.5622215246003 4.65685945416578 7.17249613368544 7.4831509012125 6.57891888406144 6.14080724607161 2.50037086990414 3.22659423177618 2.11228119291729 2.6757593587175 2.19729796868362 2.51784263467189 2.70010623828099 2.42933441993707 2.40026552457705 2.28009836613527 2.63843717467411 2.34886073348980 2.30223521045908 0.297436466339634 0.306613074504673 0.330224852710916 0.307919079026972 0.320046008808603 0.311510047340249 0.303750429426989 0.310692714594863 0.299875072323335 0.295049825449115 0.305900017884501 0.312918938555967 0.295758244179982 0.301982865069894 0.300304595238718 0.300618056330987 0.312110868635761 0.294105339064602 0.3004310734913 1 1|0 -|/ 511920 513467 512858.5 511765 513611 - gene protein_coding_gene FALSE TRUE AT1G02470.1|AT1G02470.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02475.1); similar to Streptomyces cyclase/dehydrase [Medicago truncatula] (GB:ABE82400.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) 1.59146844983554 12.7230079079547 7.12386813413062e-08 0.00110419956079025 11.4709862208186 7.69140522397843 1.59146844983554 0.157166117342528
AT3G51660_at 8.2903118454303 8.96832929381427 9.56165067449314 9.66376611160456 9.43373072141881 8.59485570823885 5.93392216080065 5.92416210038297 6.42960840828314 5.16811366370986 7.10850204978558 7.29163407080423 7.4237302864158 7.74738599663016 6.55736701636757 6.7384863497387 6.44869521167038 6.44088655060826 4.77648149733261 0.292423149842685 0.283484202176222 0.313036799818381 0.301800263251849 0.283999458132073 0.301939733423629 0.286522837794265 0.279463501766055 0.296951164539833 0.283091209459743 0.279463501766055 0.279463501766055 0.279463501766055 0.292677430970120 0.283377153340173 0.280135236884334 0.300477367345294 0.295585755187579 0.293288276692742 3 3|0 -|/ 19175223 19176031 19175494.4 19175042 19176226 - gene protein_coding_gene FALSE TRUE AT3G51660.1 macrophage migration inhibitory factor family protein / MIF family protein similar to macrophage migration inhibitory factor family protein / MIF family protein [Arabidopsis thaliana] (TAIR:AT5G01650.1); similar to Macrophage migration inhibitory factor family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95632.1); contains InterPro domain Macrophage migration inhibitory factor; (InterPro:IPR001398) 1.77291876944625 12.6993381420005 7.26111102495354e-08 0.00112539959775755 11.4617226932922 14.5101679759952 1.77291876944625 0.187502294064134
AT3G55120_at 4.81870199595159 5.18941771129931 3.66725959281191 3.53486969794829 3.66839879358647 4.16389475364677 6.8222933135766 6.98426591938276 4.99649490250551 5.90271206869571 4.91165798827588 4.86947615873647 4.59540594045678 4.67050881919538 4.55056804353843 3.99186162841984 5.18895256374416 4.79646560622186 4.67741181478667 0.269070488523763 0.266926540732661 0.272818619222174 0.27453642667764 0.262525821740915 0.262525821740915 0.275509349439266 0.272355666444419 0.267305054002502 0.269242112825326 0.262525821740915 0.267760307140574 0.266836668105134 0.271279057696940 0.263896969396175 0.262525821740915 0.268250951083831 0.262525821740915 0.262525821740915 3 3|0 -|/ 20441326 20442121 20441762.667 20441091 20442447 - gene protein_coding_gene FALSE TRUE AT3G55120.1 TT5 (TRANSPARENT TESTA 5); chalcone isomerase Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Identical to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase) (TRANSPARENT TESTA 5 protein) (CHI) [Arabidopsis Thaliana] (GB:P41088;GB:Q8W532;GB:Q9LE13;GB:Q9LF74;GB:Q9LF75); similar to chalcone isomerase [Arabidopsis thaliana] (TAIR:AT5G66220.1); similar to Chalcone--flavonone isomerase (Chalcone isomerase) (GB:O22651); contains InterPro domain Chalcone-flavanone isomerase; (InterPro:IPR003466) -1.34520409698828 -12.6749441423641 7.40556412708275e-08 0.00114771432841528 11.4521411730628 9.80067190006024 -1.34520409698828 0.113044387361574
AT1G77120_at 4.68765931118619 4.39090569742513 6.18236203885382 5.80248625809065 5.83642140923337 5.82160861270023 4.47191768643070 4.50569478506189 2.91946198127988 3.66350138391982 4.0855347449294 3.93198660948207 4.41599391000398 4.35088740935369 3.99732437186231 4.02535740080187 4.79727965899111 4.34629320114066 3.09357666537901 0.232864778333105 0.232791666344039 0.238363422845089 0.233723221974297 0.235018777484391 0.239227163121684 0.235248435402375 0.232467762546553 0.245956659325390 0.238513298689266 0.232103718076062 0.234637630451154 0.234594490823876 0.232103718076062 0.233821141371644 0.232103718076062 0.236001025653502 0.237255072873277 0.248917398777132 1 1|0 +|/ 28981334 28982073 28981699.8 28980288 28982311 + gene protein_coding_gene FALSE TRUE AT1G77120.1 ADH1 (ALCOHOL DEHYDROGENASE 1); alcohol dehydrogenase Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. Identical to Alcohol dehydrogenase (EC 1.1.1.1) (ADH1) [Arabidopsis Thaliana] (GB:P06525); similar to ADH2 (ALCOHOL DEHYDROGENASE 2), formaldehyde dehydrogenase (glutathione) [Arabidopsis thaliana] (TAIR:AT5G43940.1); similar to alcohol dehydrogenase [Arabis glabra] (GB:AAF23537.1); similar to alcohol dehydrogenase [Halimolobos perplexa var. lemhiensis] (GB:AAF23539.1); similar to alcohol dehydrogenase [Arabis lyallii] (GB:AAF23546.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 1.20749701474397 12.6308032813315 7.67494996864175e-08 0.00118938699664041 11.4347138020408 8.94705472829618 1.20749701474397 0.0836641228765402
AT4G39030_at 7.0273369901557 6.95589407615419 9.5875125865392 9.65584938931787 6.17992692628277 5.27759869380817 1.7198055215953 1.45156760150001 2.17355255046336 1.91220444520147 2.11762130251635 2.08984933336978 1.56684045568653 2.24613539407337 2.23584485893153 1.90421476436532 1.27444139033216 1.90863863309879 2.12280047572382 0.253234492157573 0.26427195575143 0.257053498773397 0.249599447052807 0.249879932052810 0.273357719874263 0.244332116303213 0.240855366849309 0.249193312139721 0.243188545881704 0.242489362215015 0.240855366849309 0.240855366849309 0.244964991923515 0.242267833686346 0.240855366849309 0.261673791248104 0.245787900847885 0.244379375898166 4 0|4 /|+ 18187786 18188280 18188017.3 18185661 18189074 + gene protein_coding_gene FALSE TRUE AT4G39030.1 EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5); antiporter/ transporter Encodes an orphan multidrug and toxin extrusion transporter. Essential component of salicylic acid-dependent signaling for disease resistance. Member of the MATE-transporter family. Expression induced by salicylic acid. Mutants are salicylic acid-deficient. Identical to Enhanced disease susceptibility 5 (Eds5) (Salicylic acid induction deficient 1) (Sid1) (EDS5) [Arabidopsis Thaliana] (GB:Q945F0;GB:Q9SVJ0); similar to enhanced disease susceptibility protein, putative / salicylic acid induction deficient protein, putative [Arabidopsis thaliana] (TAIR:AT2G21340.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88792.1); contains domain DNA-DAMAGE-INDUCIBLE PROTEIN F (PTHR11206:SF3); contains domain MULTIDRUG RESISTANCE PUMP (PTHR11206) 1.61749998052644 12.6192434334366 7.74724420176512e-08 0.00120051296150552 11.4301306569580 7.97567018500729 1.61749998052644 0.163801685854875
AT1G23140_at 7.36497127746583 7.48841724098084 5.598382740432 5.9643714867114 6.17959297655704 5.68492999063379 6.2263540966779 5.79637616252728 5.91025665044344 5.64312999992233 3.42668708319267 3.53757912830115 4.07133484915240 3.76646344113371 2.72433413680201 3.60373931911055 3.97158113051382 3.59603590518884 5.19641762742159 0.242003674533235 0.256862047959810 0.243680018274327 0.258427886828409 0.247178328833155 0.254365332696318 0.246907014762757 0.248870088526177 0.261242862496366 0.25717262852177 0.244728273267757 0.245491494659198 0.249045526634401 0.250653544423539 0.253182104589083 0.244042466149060 0.255315430946839 0.242003674533235 0.245953536799082 1 1 - 8202360 8203132 8202758.364 8202250 8203204 - gene protein_coding_gene FALSE TRUE AT1G23140.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70810.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -1.4291295571254 -12.5644253279243 8.10029036364208e-08 0.00125513999184634 11.4082878147688 10.8731682298834 -1.4291295571254 0.131653450953493
AT2G46830_at 8.84687726158981 8.89584368396 8.4410582698701 8.61230926553668 8.7929103818504 8.63900600654938 11.0343121323706 10.9464436854735 10.8223101065335 10.7755765521629 9.78732612026596 9.85629889201495 10.0945150543115 10.0951905036133 9.23183852670394 10.7263369354112 10.4063888875811 9.87417858397695 10.9221800657152 0.0930768951351176 0.0901452232095899 0.100285580779612 0.0924355829166995 0.0873115547566062 0.0953289295623914 0.0875711380530044 0.0877211691933198 0.0904787911069474 0.0873014315753382 0.0855038829530511 0.0876817734697402 0.0855038829530511 0.0900615803177937 0.0907083722853324 0.0859722469535864 0.086268465483138 0.087834221213446 0.0855038829530511 2 2|0 +|/ 19255138 19255711 19255375 19252746 19255983 + gene protein_coding_gene FALSE TRUE AT2G46830.1|AT2G46830.2 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); transcription factor encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of ARABIDOPSIS. similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1) -1.07028063169126 -12.5601769601694 8.12837189022676e-08 0.00125940994067173 11.4065874565708 19.7006108006278 -1.07028063169126 0.0434818688098222
AT4G39260_at 11.4118454968752 11.1623241450522 11.5907088667526 11.4222665139227 12.0905266672456 11.7112642694292 9.81062800072866 9.23077020958618 9.37544554062984 9.37949618544002 10.9111107168296 11.1070931512178 10.9697068869881 11.0786263262149 11.1887127424165 10.8106008565629 11.0132738686705 10.5651704783422 9.46960021600715 0.0968478169442535 0.0964550224966097 0.098566062409704 0.0984758483687014 0.097484932065268 0.0976794876028519 0.102019098106676 0.103059023995307 0.107440105738 0.104509096333495 0.0957928476391458 0.0953994891986244 0.0984666330946754 0.0990480259067752 0.0962038869254353 0.0971585295083219 0.0989196764994848 0.0986134906125163 0.0975953034570976 4 4 - 18274238 18274922 18274531.273 18273893 18275073 - gene protein_coding_gene FALSE TRUE AT4G39260.1|AT4G39260.2|AT4G39260.3|AT4G39260.4 ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8); RNA binding Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); similar to Glycine-rich RNA-binding protein 10 (GB:Q05966); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to Glycine-rich RNA-binding protein GRP1A (GB:P49310); similar to Glycine-rich RNA-binding protein (GB:Q03878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.2); similar to Glycine-rich RNA-binding protein 10 (GB:Q05966); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to Glycine-rich RNA-binding protein 10 (GB:Q05966); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 1.42357792366164 12.5587069099752 8.13811346782274e-08 0.00126083791956978 11.4059988327215 21.2356505340812 1.42357792366164 0.130734610005553
AT2G39350_at 2.70438969581805 3.52259910400154 4.02546826907402 4.54649336880364 7.08459953120847 6.30022875182601 1.6567082678058 1.91038402988114 4.34186770502217 2.37465512885601 4.61326669200956 3.51807288274882 2.70811434267735 5.29787488785435 4.54936010306767 2.92257215478407 2.72581585406821 3.89885286939021 1.99254923129638 0.274083924239619 0.270230373051196 0.271806944503969 0.270230373051196 0.296245699496202 0.288974511078936 0.285155340141293 0.284048417147938 0.276223714991798 0.278188672467199 0.280591062936673 0.270230373051196 0.273554065721114 0.281651280563429 0.275933402767365 0.274488316680252 0.295366743021126 0.275592337511452 0.290199381192405 2 2 - 16437308 16437812 16437575.727 16437163 16439635 - gene protein_coding_gene FALSE TRUE AT2G39350.1 ABC transporter family protein Identical to White-brown complex homolog protein 1 (WBC1) [Arabidopsis Thaliana] (GB:O80946); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G13580.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55090.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G53510.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90508.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97036.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.95844720372579 12.5359707649516 8.29040485634975e-08 0.00128434952034570 11.3968783855847 7.30999149982727 1.95844720372579 0.220298158948256
AT3G49160_at 3.16541478745356 3.42519089564717 2.776172579723 3.14363935769421 1.48816393581929 1.56163058791653 4.25866175960885 4.26815203104462 2.93259005306667 2.79363572723521 2.77828370810906 1.94417027383586 1.84527408158505 1.89735284032823 2.08496800854610 2.22842563757426 2.20149676190180 2.89977794484816 3.42602237885949 0.232953684925878 0.222845829492033 0.222845829492033 0.226974212500565 0.222845829492033 0.225150941161877 0.230462154054811 0.243382592447913 0.243800854545256 0.230668352841231 0.227728484881696 0.227904587062582 0.223098952003234 0.222845829492033 0.233563603214392 0.222845829492033 0.232958764240362 0.224957995884611 0.229929744112832 3 3|0 -|/ 18233118 18233748 18233481.5 18232979 18235870 - gene protein_coding_gene FALSE TRUE AT3G49160.1 pyruvate kinase family protein similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase family protein [Marinobacter aquaeolei VT8] (GB:ZP_00817592.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -1.17636699122317 -12.5003862071107 8.53500659327535e-08 0.00132215787136428 11.3825408739318 5.6537372636025 -1.17636699122317 0.0789256151239632
AT3G30775_at 5.33619034752402 5.58205080425951 3.9424237308462 3.91853294699338 5.27073642271071 5.19810432505049 6.06615449922078 6.23228884493424 6.0314764314466 3.79899750600294 3.54618747176347 4.14676166697008 3.3389559759152 3.37857769298128 4.09598541196143 4.68573384990067 3.86736354780595 3.59358499135115 4.52146564780408 0.257574861027541 0.257574861027541 0.262323853384210 0.264711911954702 0.263676300451503 0.276802630360201 0.260433154627679 0.257803209433779 0.271632615104939 0.257574861027541 0.25920193122956 0.258388042556934 0.262650661538029 0.259041690820402 0.272648160490124 0.257958867584346 0.264581726352949 0.270638603524094 0.263133245057054 3 3|0 -|/ 12451492 12452107 12451839.4 12451115 12453727 - gene protein_coding_gene FALSE TRUE AT3G30775.1 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. Identical to Proline oxidase, mitochondrial precursor (EC 1.5.99.8) (Osmotic stress-induced proline dehydrogenase) (POX) [Arabidopsis Thaliana] (GB:P92983;GB:P92945;GB:Q96281); similar to proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G38710.1); similar to proline dehydrogenase [Glycine max] (GB:AAR86686.1); contains InterPro domain Proline dehydrogenase; (InterPro:IPR002872) -1.08702890162725 -12.4692509225415 8.75546118743263e-08 0.00135622093793331 11.3699326253532 9.5011220841086 -1.08702890162725 0.0530276811070184
AT1G80050_at 7.30129194850853 7.04599497887093 4.29680457638287 4.37857861838077 5.906211161731 6.28098433099255 7.13470861065374 7.13665082320146 7.06233161449423 7.75812963698257 6.97729585911101 8.403051121587 6.53422997774129 6.14769841849181 7.8902414566143 7.92724534525517 6.14936072511873 7.02374203226853 7.78735664973298 0.227559776468171 0.225307190377146 0.254392316635776 0.257944611684983 0.231231844670002 0.239975161679941 0.226373191337907 0.224791245082922 0.232988889043748 0.239901724283583 0.229286992217053 0.244343867245274 0.2261734276267 0.240042099695345 0.237399476236697 0.233927527521188 0.259785132520442 0.233443221156299 0.256723604838254 1 0|1 /|- 30116632 30117904 30117254.333 30116407 30118217 - gene protein_coding_gene FALSE TRUE AT1G80050.1 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. Identical to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT 2) (APT2) [Arabidopsis Thaliana] (GB:Q42563;GB:Q39004); similar to APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G11160.1); similar to Os04g0504000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053244.1); similar to Os02g0613900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047421.1); similar to putative adenine phosphoribosyltransferase form 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD19719.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -1.17167405090832 -12.4172252811752 9.13775539964097e-08 0.00141534693385039 11.3487318133600 13.5189268398036 -1.17167405090832 0.0797408845405297
AT2G30010_at 5.65263836024408 6.12417466178945 2.44226855002694 2.58791064159446 3.14204059202600 3.01023617507376 3.99087791102844 4.41733420922132 7.15720839115285 6.46090908381225 7.63613987059498 7.9411544520421 6.46957655058861 6.71668696976521 7.84489444630943 7.49112777391418 3.53075413246826 6.18219105927438 7.7732285179547 0.316367789537539 0.316367789537539 0.362952921315925 0.344057832882239 0.334160916862586 0.330435937556225 0.317891136896681 0.325959007043312 0.32409996842074 0.316367789537539 0.316367789537539 0.316367789537539 0.31668241793948 0.319386934664752 0.316367789537539 0.316367789537539 0.33904627246575 0.316367789537539 0.316367789537539 2 2 + 12814749 12816254 12815591.364 12812801 12816463 + gene protein_coding_gene FALSE TRUE AT2G30010.1 similar to PMR5 (POWDERY MILDEW RESISTANT 5) [Arabidopsis thaliana] (TAIR:AT5G58600.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); similar to Os03g0290900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049797.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.32726265166374 -12.4087222786470 9.20194281966005e-08 0.00142519690390895 11.3452508720097 10.8494422982137 -1.32726265166374 0.115155556394780
AT1G49720_at 9.08659316161576 9.11909429871942 9.15844593295837 9.25994143037526 10.1247947323557 9.55373754118087 7.50506302427614 7.48187842645923 5.89382479690047 6.43035084126566 7.32120932373146 7.20003029168658 7.83156953528068 7.87102597174472 6.53728836230974 6.90197152277995 7.48714141093638 7.40992957241659 5.77811155368002 0.295387269312341 0.295336181009922 0.296462483884003 0.297114068563729 0.299514362069386 0.302515358791101 0.292497327595609 0.29731596379052 0.319061358011926 0.296380440926828 0.291629373765608 0.296477653928483 0.293112607746392 0.291629373765608 0.293060055010549 0.291629373765608 0.31026585184048 0.30458535608929 0.307447221208600 1 1 + 18405089 18405951 18405307.182 18403760 18406296 + gene protein_coding_gene FALSE TRUE AT1G49720.1 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / transcription factor/ transcriptional activator Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. similar to ABF4 (ABRE BINDING FACTOR 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G19290.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 1.25599884984765 12.3834242744488 9.39582529076274e-08 0.00145513146278043 11.3348678618368 15.5882518082307 1.25599884984765 0.100610341354518
AT3G11340_at 1.63655057547839 1.86782650094166 6.46138435765828 6.1122805552528 0.97582784578866 1.13010411953137 1.05932006417605 0.707097052025875 1.04615626013231 0.742124427002126 1.02230205361931 1.18834603547833 0.996955637355214 1.04613134792251 0.919334432014795 1.01380613572082 1.32964256679211 1.10844146511308 1.03353890296130 0.240619972803482 0.246555498301059 0.342360642550409 0.351625501390853 0.241642413014702 0.243725820057704 0.242355588602041 0.248084597631897 0.2451763700748 0.252155313194156 0.246952482115107 0.261073587769141 0.240619972803482 0.247237536510989 0.240619972803482 0.241594661822495 0.240619972803482 0.241313205851226 0.249985751256791 3 3 + 3557579 3558099 3557809.818 3556711 3558275 + gene protein_coding_gene FALSE TRUE AT3G11340.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UGT76C2 (UDP-glucosyl transferase 76C2), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G05860.1); similar to UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase [Dianthus caryophyllus] (GB:BAD52007.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 1.24485705031120 12.3717879422920 9.4864911629576e-08 0.00146907802149562 11.3300785962486 3.50316212849860 1.24485705031120 0.0983864448423955
AT4G37190_at 6.18821552636506 6.37458941485313 4.47324646911594 4.64636054225441 5.04027996791358 5.32360988632635 5.89031665328792 5.89274980705458 3.08258649437212 4.48669396639855 2.13912712448168 2.38299694497068 2.99867821129731 2.39001663852216 2.74505771903876 2.99250648686714 3.55381246559659 3.04348084257921 3.8260851721392 0.235432445809905 0.226853097712061 0.230735799927690 0.236110582032318 0.228626537744322 0.239670640816504 0.238510857758105 0.237051225827165 0.226853097712061 0.23468715970921 0.231357804044657 0.231914969670076 0.226853097712061 0.241407175917711 0.22866445192309 0.230508730558880 0.243516700939647 0.230428821868206 0.233028660011218 4 4 + 17508910 17509471 17509180.545 17507044 17509741 + gene protein_coding_gene FALSE TRUE AT4G37190.1|AT4G37190.2 similar to Os03g0240900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049512.1); similar to Os12g0586400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067157.1); similar to tubulin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC84426.1)|similar to Os03g0240900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049512.1); similar to Os12g0586400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067157.1); similar to tubulin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC84426.1); contains domain FAMILY NOT NAMED (PTHR13391); contains domain Tubulin/Dihydroxyacetone kinase nucleotide-binding domain (SSF52490); contains domain gb def: Tubulin-like protein (PTHR13391:SF4) -1.11666964539418 -12.3600308168734 9.57906398825325e-08 0.00148331805858102 11.3252310217271 8.76825341596594 -1.11666964539418 0.0658939513109624
AT4G25100_at 11.8629879330831 11.9504330727010 11.1311118881557 11.1435825016195 11.1050174481880 11.1817084646165 12.7852961378684 12.9843059833402 12.5097533284049 12.6542786020662 11.2273932381746 12.0044222907478 12.0687291574543 11.6372952629941 9.43685728063295 11.6397573056278 12.2013779335354 11.8353586052090 11.8596121881683 0.0766577561029613 0.075404832816657 0.0754700628589142 0.0769270654217318 0.0754855076689146 0.0795953504102223 0.0761353766185659 0.0770784451283419 0.082796086108669 0.0766583613506933 0.0774230266116883 0.0760875861859644 0.0765615601233328 0.0779555740997201 0.0861130697572772 0.0753017383277127 0.0765631004464494 0.0783302668438094 0.0753017383277127 4 0|4 /|- 12884677 12885605 12885283 12884310 12886831 - gene protein_coding_gene FALSE TRUE AT4G25100.1|AT4G25100.2|AT4G25100.3|AT4G25100.4 FSD1 (FE SUPEROXIDE DISMUTASE 1); iron superoxide dismutase Fe-superoxide dismutase Identical to Superoxide dismutase [Fe], chloroplast precursor (EC 1.15.1.1) (SODB) [Arabidopsis Thaliana] (GB:P21276;GB:Q9FE21;GB:Q9SW16); similar to FSD2 (FE SUPEROXIDE DISMUTASE 2), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT5G51100.1); similar to Fe-superoxide dismutase (GB:AAA32791.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -1.0451082640097 -12.3573282532874 9.6004817127918e-08 0.00148653858840868 11.3241155062695 23.6918622239516 -1.0451082640097 0.0399484984608692
AT1G73800_at 9.14991966088855 9.1343265880825 9.87621757751097 9.90814442824214 8.5297771295584 8.13382184769722 3.36979906859477 3.62796642373175 6.66636367132717 4.1853094700692 4.16916258045704 4.17970583250392 4.06319787176865 4.68310734127723 4.27926257613541 5.03125369818213 4.95861761993127 5.5873761328684 4.34006040141749 0.268571997632468 0.262696878879735 0.26751643977952 0.269605122309692 0.270019308395849 0.257657640875268 0.271608920617212 0.258294137861792 0.279600230029576 0.255931752354607 0.255923977063435 0.263891363956898 0.259094671205922 0.258885959264427 0.261976542879911 0.25843285554036 0.273143627940223 0.266115872043444 0.272070852832054 1 1|0 -|/ 27749438 27750291 27749984.714 27749109 27750369 - gene protein_coding_gene FALSE TRUE AT1G73800.1 calmodulin-binding protein similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G57580.1); similar to At1g73800/F25P22_22 [Medicago truncatula] (GB:ABE78902.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR012416) 1.17326829306517 12.3400971461011 9.73826643058235e-08 0.00150777579144706 11.3169923923337 12.5576824093275 1.17326829306517 0.0820310935142531
AT1G67970_at 9.01230214439158 9.51052994377904 9.91433444957766 9.77439405049632 10.0070510150380 9.48236211284903 6.83470561387401 6.51844258784876 5.3136314948219 4.84237719296474 5.5456738237524 5.63814716240622 5.88999364845541 6.48738932338595 5.5100392494191 5.69307571434081 6.4800203817643 5.77138743094227 4.31643183173119 0.209802929487422 0.215290668876886 0.216917267730732 0.212104779545674 0.226929283180211 0.222080310852279 0.220410540274998 0.215752865203668 0.228876958943481 0.216900709323936 0.218487246933597 0.209802929487422 0.209802929487422 0.21212769007672 0.212886630861098 0.209802929487422 0.236367089392316 0.211955355484485 0.209802929487422 1 1 - 25488515 25489062 25488797.727 25488362 25490125 - gene protein_coding_gene FALSE TRUE AT1G67970.1 AT-HSFA8 (Arabidopsis thaliana heat shock transcription factor A8); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-8 (AtHsfA8) (Heat shock factor protein 5) (HSF 5) (Heat shock transcription factor 5) (HSTF 5) (HSFA8) [Arabidopsis Thaliana] (GB:Q9S7U5); similar to HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G17750.1); similar to heat shock factor protein hsf8-related [Glycine max] (GB:AAS15800.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 1.43917966824296 12.3198441195354 9.9029666526197e-08 0.00153317729715858 11.3085961991119 14.2323215805556 1.43917966824296 0.138782395922581
AT1G22530_at 7.64526546039754 7.6132727125216 7.90988835133595 7.87102408816686 8.66832285128002 8.27966521780847 5.34258109564018 5.4320197429506 8.71892591083637 6.76434452773238 9.9039246490907 7.72703737275106 8.73609318569879 8.96873571047285 8.61574487443642 7.40418069059294 6.50383380425962 8.43740369539475 7.66061184152454 0.176758970134016 0.170262720150673 0.171621021944296 0.179397861009756 0.170424425546159 0.180090545840473 0.200049910635683 0.189286469523897 0.174914203430380 0.180427984051414 0.179536603006771 0.168744461403875 0.171478494929786 0.172348640926772 0.172019614380044 0.171238699761888 0.189106668057072 0.1790910285937 0.169252812962673 1 1|0 -|/ 7955772 7956816 7956200.2 7955482 7958431 - gene protein_coding_gene FALSE TRUE AT1G22530.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-2 (PATL2) [Arabidopsis Thaliana] (GB:Q56ZI2;GB:Q9SK94); similar to PATL1 (PATELLIN 1), transporter [Arabidopsis thaliana] (TAIR:AT1G72150.1); similar to putative cytosolic factor [Trifolium pratense] (GB:BAE71201.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 1.12321609770486 12.2955845888742 1.01042408535094e-07 0.00156423752653178 11.2985049896731 15.3461282772801 1.12321609770486 0.0695645297211114
AT3G06770_at 4.58957012217591 5.21398314243638 3.32721190835525 2.81414500387417 3.39064078941312 3.56209663011845 6.91241128511308 6.98865388803737 7.70203593248025 7.2821118935509 8.6313172666123 8.2878178218012 7.41447717776302 8.05582238834536 8.63441137385202 6.732932023541 5.17281342790168 7.13279169264275 8.34859525135073 0.266900145689675 0.260373839268389 0.271960895329906 0.276683037590642 0.271264325447474 0.268915040667519 0.262259477815128 0.263031482399701 0.268040140127494 0.26078528162744 0.268609509006864 0.260286069235399 0.268443621237364 0.263157208756322 0.271079956402808 0.265577139905746 0.276736058996839 0.261834576328249 0.260225325018322 3 3 - 2135172 2135692 2135427.818 2134806 2137234 - gene protein_coding_gene FALSE TRUE AT3G06770.1|AT3G06770.2|AT3G06770.3 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Arabidopsis thaliana] (TAIR:AT5G49215.2); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334)|similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G49215.1); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.46120707786849 -12.2863815638582 1.01817542128417e-07 0.0015761355521479 11.2946670731761 12.2425285573662 -1.46120707786849 0.143576907053620
AT1G02450_at 4.90696886911662 5.71988345705504 8.59674943322989 8.75258578078387 3.83792136040056 3.57580450312561 1.93824968664139 1.86268856876188 3.17060611451734 2.27509404404033 3.11814039385028 3.05570969607091 2.23959290242327 2.71152467108358 2.53713997279806 3.01822938479929 2.91908707606502 3.73483633125989 2.05817874297484 0.302768982304595 0.325379683219158 0.326656715392922 0.333714012326503 0.305629545744037 0.292485784929042 0.292577549250261 0.2990103982531 0.293320872826467 0.297481047258745 0.299680972795605 0.304292867017788 0.305654366554772 0.292761184426673 0.297577248536823 0.292485784929042 0.296604918990433 0.297040574370961 0.30260657100781 1 1 - 498057 498391 498207.091 497976 498516 - gene protein_coding_gene FALSE TRUE AT1G02450.1 NIMIN-1/NIMIN1; protein binding NIMIN1 modulates PR gene expression according the following model: NPR1 forms a ternary complex with NIMIN1 and TGA factors upon SAR induction that binds to a positive regulatory cis-element of the PR-1 promoter, termed LS7. This leads to PR-1 gene induction. NIMIN1 decreases transcriptional activation, possibly through its EAR motif, which results in fine-tuning of PR-1 gene expression. similar to systemic acquired resistance (SAR) regulator protein NIMIN-1-related [Arabidopsis thaliana] (TAIR:AT4G01895.1) 1.49965360517877 12.2741744502187 1.02855676851688e-07 0.00159210302198727 11.2895680758676 7.60789421775 1.49965360517877 0.150818884335331
AT4G31590_at 3.70167356106221 4.07028088498077 1.97531279862068 1.95670067266431 2.76841931241026 2.59728756745038 6.02842098198236 6.142407869366 3.80484065736092 5.34938621519602 5.84589569213002 6.89097800012918 5.24090522456279 5.06609031224215 6.15332910287604 5.34742821318234 3.70003167946595 4.91385316135095 5.84562539535788 0.256162519785676 0.254181226835693 0.268284565190913 0.266008636209283 0.254181226835693 0.262148944781113 0.257185295940655 0.264637252540315 0.258026166324881 0.263778244350842 0.258114790844966 0.258399146052885 0.256810906728094 0.259656494508091 0.259015302337076 0.254181226835693 0.26823111140132 0.262242374729755 0.261855252937975 4 4 - 15309948 15310438 15310246.273 15309512 15312597 - gene protein_coding_gene FALSE TRUE AT4G31590.1 ATCSLC05 (Cellulose synthase-like C5); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC04 (Cellulose synthase-like C4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G28180.1); similar to putative glucosyltransferase [Cicer arietinum] (GB:CAB88664.1); similar to TPA: TPA_exp: cellulose synthase-like C3 [Oryza sativa (japonica cultivar-group)] (GB:DAA01751.1); similar to TPA: TPA_exp: cellulose synthase-like C2 [Oryza sativa (indica cultivar-group)] (GB:DAA01750.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.13320128464530 -12.2688054482954 1.03315909580251e-07 0.00159912364848313 11.2873224070227 8.85244529567414 -1.13320128464530 0.0731136713756039
AT3G05880_at 11.3913337556757 11.6121748666851 11.1160507065183 11.1568961960746 11.7351562225979 11.5577431978354 9.86784994966741 9.91782111091674 10.3729639297376 9.6966155325426 11.7520495088893 11.4179104862943 11.3774206637474 11.2197348097826 11.8226646651713 11.2391293489790 11.1843338818017 11.1968752280574 9.84994485832152 0.0919536939119945 0.0911554550274076 0.0933289718656885 0.0914299630082741 0.0914567690037074 0.0923217627024285 0.0979476351384445 0.0997251036205337 0.0946811236503648 0.0993870225149894 0.0914998680179808 0.0911554550274076 0.0926693271099759 0.0962659595875851 0.0977410116915525 0.0915264447711011 0.0988671192047783 0.0950363240826998 0.101350820944642 3 3|0 -|/ 1756201 1756474 1756304.333 1755503 1756546 - gene protein_coding_gene FALSE TRUE AT3G05880.1 RCI2A (RARE-COLD-INDUCIBLE 2A) Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains. Identical to Hydrophobic protein RCI2A (Low temperature and salt-responsive protein LTI6A) (RCI2A) [Arabidopsis Thaliana] (GB:Q9ZNQ7); similar to RCI2B (RARE-COLD-INDUCIBLE 2B) [Arabidopsis thaliana] (TAIR:AT3G05890.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABD33197.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 1.0611283552884 12.2566196101026 1.04368802810447e-07 0.00161531596109729 11.2822186795859 21.7315980495585 1.0611283552884 0.0502787531587181
AT3G15400_at 3.19558942656399 3.28873829749023 2.52296816074502 2.17702082209159 2.26607566119325 2.15650847788728 3.91273624934642 4.88213118366189 3.50762353798510 4.77068433583944 2.68562500342572 2.52113203684274 2.49826803656049 2.50809272933807 2.28604878304252 2.12964599236914 2.57110191928398 2.21368774448163 4.35326188960261 0.214391661806865 0.209825301305466 0.211201568500577 0.212724917297622 0.214017223671047 0.209825301305466 0.216915910033591 0.220595999734268 0.219733959295031 0.227971193996705 0.215789822324150 0.212166567852126 0.211049386246034 0.224519552702838 0.21239454674766 0.214069086879111 0.220028926024766 0.212407296488516 0.223318410933460 3 3 + 5202535 5202907 5202733.182 5201651 5203204 + gene protein_coding_gene FALSE TRUE AT3G15400.1|AT3G15400.2 ATA20 (Arabidopsis thaliana anther 20) Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Os05g0226800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054964.1); similar to ovarian fibroin-like substance-1 [Cyprinus carpio] (GB:AAG25716.1) -1.66148924129701 -12.2297614633158 1.06730801103088e-07 0.00165176587787139 11.2709363563067 6.36883280244434 -1.66148924129701 0.179850990590697
AT1G01640_at 3.35672905287300 3.61188174527067 4.90343050740174 4.79529006322689 5.36779268199876 4.80055776467167 2.06247954424452 2.11803209208207 3.04565466544445 2.18972712130359 2.44787256404169 2.29252745287615 2.67885085990074 3.06752768549232 2.94210067083177 2.74668555239260 3.70398979141863 3.02692860537552 2.20554280018298 0.235184464382599 0.235184464382599 0.260924794092435 0.250255005573193 0.263018109994516 0.261350412958455 0.235184464382599 0.235184464382599 0.246821031028307 0.24513141537582 0.236278393102151 0.238931778428261 0.236195770403861 0.235654161702408 0.240709048596268 0.237478505392746 0.249241518824285 0.236104542666041 0.243404507044682 1 0|1 /|- 231171 231582 231383.5 230994 232506 - gene protein_coding_gene FALSE TRUE AT1G01640.1|AT1G01640.2 speckle-type POZ protein-related similar to speckle-type POZ protein-related [Arabidopsis thaliana] (TAIR:AT3G56230.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE86049.1); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 1.28124467392735 12.2229765771694 1.07336628477966e-07 0.00166103432569652 11.2680789174143 6.54883347818859 1.28124467392735 0.109673355863583
AT1G07720_at 6.59727074032285 6.82295150939224 8.55932662654806 8.7466808788802 8.88552015762906 9.018171623971 8.34902638665881 8.7711253999425 7.54571793907202 7.44587058922156 9.20561244733434 8.58356796180705 9.11146386026781 9.09233683309565 8.09003023609093 8.29148089261874 8.74577670977765 8.49366798710525 7.42267038889243 0.139940343665929 0.140669441053515 0.136923073793476 0.138360260869024 0.135301976510884 0.137253087708849 0.135725141696935 0.139105672054125 0.140265425632568 0.143298676924986 0.141236451939486 0.134799525355777 0.135307598725903 0.143811881012751 0.141792163121231 0.134799525355777 0.139676164002524 0.135414762416746 0.149471524259946 1 1 - 2391163 2391542 2391381.091 2390652 2392450 - gene protein_coding_gene FALSE TRUE AT1G07720.1 beta-ketoacyl-CoA synthase family protein Identical to 3-ketoacyl-CoA synthase 3 (EC 2.3.1.-) (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (KCS3) [Arabidopsis Thaliana] (GB:Q9LQP8); similar to beta-ketoacyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT2G28630.1); similar to 3-ketoacyl-CoA synthase 3 (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (GB:Q9LQP8); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE84281.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE80003.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; (InterPro:IPR013747); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392) 1.19882689481408 12.1920948319399 1.10141652654384e-07 0.00170433193317394 11.2550357668761 16.3053400429552 1.19882689481408 0.0918653659946456
AT1G48570_at 6.63453805665542 6.73999853091554 6.09253730752031 5.81328280780445 4.95126679048738 4.89242222480127 7.11832671470187 6.75773429958438 4.65836427342527 5.37692389255785 3.89223129556184 3.96538491809658 3.66338611175236 3.71232248088638 4.19282760401239 4.46901106809005 4.73961964278361 4.36698290080844 5.15766146500956 0.250807905089328 0.248737072476651 0.245826482416751 0.246097534448813 0.245826482416751 0.245826482416751 0.264729708832291 0.255723151126396 0.2581199980377 0.250319995038428 0.250372178128624 0.245826482416751 0.246804082618121 0.24669588181256 0.248597861930957 0.245826482416751 0.249672449596944 0.246545824781107 0.249370440574401 1 1|0 -|/ 17959127 17960357 17959793.444 17958946 17961387 - gene protein_coding_gene FALSE TRUE AT1G48570.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G70650.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE26599.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -1.15718395436311 -12.1865118033734 1.10657209494793e-07 0.00171219900251293 11.2526711719877 10.7197819897654 -1.15718395436311 0.0816470656738313
AT3G12610_at 7.22692068465374 7.8234753550959 3.54176765664347 3.60534481092580 6.24498455298851 6.25491240179004 7.89279037882412 8.08688980236647 7.58972549139599 7.54463525224499 8.77901404617336 8.91113561015958 8.24976665423373 8.12777742628307 9.157847464723 7.8890234714161 6.11807303770552 7.95516752251121 8.42141275375608 0.197707637435093 0.198421390832853 0.227603032986361 0.213066269240046 0.206981584479455 0.216053986607546 0.197707637435093 0.207945504186052 0.223154851750595 0.204149873513528 0.198531465481634 0.200622708904147 0.197707637435093 0.197943954418979 0.213229081133203 0.206464348690611 0.215735918071898 0.203188270657507 0.200178269354747 3 3 - 4006715 4007231 4006966.727 4006406 4007814 - gene protein_coding_gene FALSE TRUE AT3G12610.1 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;GB:Q9LHK0); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G20820.1); similar to leucine rich repeat protein [Cicer arietinum] (GB:CAE76632.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.27460777231488 -12.1837708359791 1.10911278709583e-07 0.00171601930419466 11.2515095460750 14.3348357820525 -1.27460777231488 0.109133254202961
AT1G64890_at 7.47529587245002 7.83217944306456 6.71099642480829 6.47126284764878 7.13652483509917 7.18413684595242 4.73403313930767 4.98599638282743 3.71299668033946 3.45059171603605 5.01938785508289 5.24620943792064 5.30509219041564 5.49050236566707 5.36577891286104 4.22324051324269 5.45579261885682 5.70374747860366 3.31667328105546 0.273757459177909 0.264814021101276 0.268607217012676 0.276791727612245 0.259569693479967 0.264361728754334 0.259933145179714 0.259569693479967 0.279070724310764 0.273939022813684 0.263758190584609 0.259642459465846 0.268453340836863 0.267805440215193 0.268304020591061 0.262530781252222 0.265792978047738 0.264564934541877 0.271157108964221 1 1 + 24114233 24114754 24114575.091 24113205 24115063 + gene protein_coding_gene FALSE TRUE AT1G64890.1 integral membrane transporter family protein similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT1G04570.1); similar to Biopterin transport-related protein BT1 [Crocosphaera watsonii WH 8501] (GB:ZP_00518975.1); similar to Os05g0389400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055433.1); similar to Os03g0795000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051544.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324) 1.17582619570120 12.1764753991499 1.11590608206311e-07 0.00172641829955984 11.2484153629924 10.9261229642573 1.17582619570120 0.0866294518837063
AT4G22560_at 3.56244555664228 3.43260194441988 2.53757784297722 2.85598165040805 2.56507933147641 2.47218742635097 4.14871230434000 4.55671744703064 4.38288277177165 4.80155743066664 3.94945221448862 5.06503841846017 3.78674905166061 3.61980977450267 4.65697431916954 3.43931984985402 2.77410921081058 3.36706353925388 5.58542360074288 0.263592449553397 0.272588885999712 0.269102085567292 0.261083480028644 0.264037987386255 0.27344035604301 0.273445550687883 0.268690622842928 0.273831076906013 0.26858445853841 0.277499757543114 0.264271168488788 0.267470393466771 0.262086644895066 0.261083480028644 0.261083480028644 0.266802003600552 0.263713350870353 0.288494884946167 4 4 + 11880423 11880926 11880681.455 11880130 11881083 + gene protein_coding_gene FALSE TRUE AT4G22560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G12450.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25627.1); contains domain ADP-ribosylation (SSF56399) -1.20419306871188 -12.1669911735572 1.12480513863984e-07 0.00174007354947583 11.2443877085739 7.64421417879005 -1.20419306871188 0.0937275067918285
AT1G17460_at 3.11962572530192 3.31590223145516 4.01461434151444 4.14164705362293 3.93160080253578 3.93783292066066 1.4693433795042 1.58968222884813 1.14914427741281 1.52449993225997 1.76594534288277 1.30953810070953 1.89068339087951 1.52749872419102 2.15385982202874 1.76151409586462 2.65257700424797 1.91965696888284 1.61459271070614 0.240542719734362 0.237598997951555 0.241798594315082 0.241177674426778 0.249965351903432 0.245311543508063 0.238786928897413 0.248051481812908 0.256014027148737 0.238971168031715 0.236460009755014 0.236703062708945 0.238654245128924 0.240513795923099 0.243770047118071 0.236460009755014 0.241445227208483 0.240923108518996 0.23695606757514 1 1 + 6001571 6002464 6002030.455 5998807 6002709 + gene protein_coding_gene FALSE TRUE AT1G17460.1 TRFL3 (TRF-LIKE 3); DNA binding / transcription factor Arabidopsis thaliana myb family transcription factor (At1g17460) similar to TRFL6 (TRF-LIKE 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G72650.2); similar to Os02g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048286.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16962.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.03801613136200 12.1260515211667 1.16411282984753e-07 0.00180076613649115 11.2269348882326 4.84106682943233 1.03801613136200 0.0455176714157677
AT2G30420_at 5.31190330831412 6.03127143466467 2.99330992207578 2.98011574854536 3.83581494823430 3.78968226263967 5.96071594044243 6.05856132377919 5.24514868801816 5.69919838887216 5.48668104672357 6.01629412072077 6.21505649816747 6.01373840621005 4.73742777681669 5.65230348346594 4.35242094803886 4.48603130856828 5.94019123622636 0.304100000527957 0.295093057106842 0.296442642600576 0.301283694703042 0.29222120331302 0.309003496211649 0.29222120331302 0.29222120331302 0.310742004558349 0.297468521973754 0.293921986990112 0.29222120331302 0.298318513174739 0.29222120331302 0.29222120331302 0.302952402328723 0.306424143491833 0.30347612064476 0.299225522698995 2 2 - 12968060 12968968 12968589.75 12967961 12969239 - gene protein_coding_gene FALSE TRUE AT2G30420.1 myb family transcription factor similar to TRY (TRIPTYCHON), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G53200.1); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G30432.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.34953376027147 -12.1221254311974 1.16796006635858e-07 0.00180660063064346 11.2252554343948 10.1192586792342 -1.34953376027147 0.125910383848375
AT2G15890_at 12.3558363706414 12.3547668343197 12.2827278313599 12.2200828141523 13.0637264291325 12.8631638120455 10.8216632829806 10.6279689098550 10.1617691303870 10.2017275148385 11.3452042167565 10.689693681789 11.3765783111260 11.4340482444355 10.7639678968029 10.9355184840764 11.8079613814114 11.1752666621088 10.1340309679131 0.0813094889967872 0.079516310821923 0.0806534594355598 0.0799244782221472 0.0880594866627804 0.0808898165769584 0.081277565757378 0.079516310821923 0.0947311992015397 0.0858808442224421 0.0827802276132245 0.079828267280618 0.0833521242466852 0.0797893354652237 0.082914928675986 0.079516310821923 0.079516310821923 0.0822251768471122 0.085040308602933 2 2|0 -|/ 6928307 6929014 6928787.6 6927451 6929107 - gene protein_coding_gene FALSE TRUE AT2G15890.1|AT2G15890.2 MEE14 (maternal effect embryo arrest 14) similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50944.1) 1.04627684716191 12.1094970124516 1.18042875709712e-07 0.00182576915860212 11.2198465732846 22.7521782343239 1.04627684716191 0.0494550190167839
AT4G18580_at 6.769472043278 6.49322763945962 8.18782145775964 8.20590907415575 8.33340624512732 7.69472541120394 5.33316331728164 5.41487259333359 4.99754707107962 4.91774086015222 5.25104233232183 4.48486132978794 5.45267536281708 5.66994094176018 4.83976598199377 6.22861359816316 6.18453657299839 5.30945449264928 4.72950759167058 0.283799225608219 0.283747190771379 0.295336277557505 0.289510850894233 0.296877676188872 0.289913250657277 0.283747190771379 0.283918552497460 0.292244055083805 0.286776343488355 0.283747190771379 0.288729696309309 0.288004702002757 0.285699041046424 0.290770537934548 0.283747190771379 0.287854999543732 0.283747190771379 0.288651346621112 4 4|0 -|/ 10234911 10235509 10235256.111 10234678 10236056 - gene protein_coding_gene FALSE TRUE AT4G18580.1|AT4G18580.2 unknown protein 1.32439723382538 12.1031149029374 1.18678505490650e-07 0.00183548176591839 11.2171090892099 12.2086796397977 1.32439723382538 0.121289931977979
AT4G17695_at 5.69263368056699 6.51306295154201 7.25993633343563 7.15117400329155 8.12563024267573 7.17196742828735 4.35366158960381 4.40126076556994 2.96733083083905 2.96978299166016 4.31560648751328 4.47950314533901 4.60615187314955 5.31200363576348 3.56400779160197 4.70732385337077 4.82662725830701 4.7579984245675 3.08018804340509 0.249642420262662 0.247758957311020 0.2509067145616 0.249360294929914 0.251306364120898 0.251901615137286 0.242673181228124 0.242179236712801 0.251091959602729 0.24314056752293 0.245497794446308 0.242352918004098 0.246200401458783 0.248780758181746 0.250861735616712 0.241598748357192 0.241598748357192 0.241598748357192 0.241598748357192 4 4|0 -|/ 9848158 9850307 9849486.222 9848142 9850717 - gene protein_coding_gene FALSE TRUE AT4G17695.1 KAN3 (KANADI 3); DNA binding / transcription factor similar to KAN2 (KANADI 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G32240.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65609.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.87620388758434 12.0746611410964 1.21557940348494e-07 0.00187989354748947 11.2048718544768 10.1221259230398 1.87620388758434 0.218670977391298
AT2G40300_at 6.55656783160109 6.37348613331707 5.5906682477811 5.48619329146287 3.17427565957818 3.64285071346817 6.46539092197417 6.82162330070254 3.59528662389429 3.63148034396837 3.78821763032149 3.10249314292067 3.11050873045787 2.7865770222059 3.13796205392025 2.91199807749632 3.19717138741225 3.77313789979197 3.76174631639389 0.284164175050979 0.297991512556927 0.291109085530576 0.288140704804007 0.281269483252465 0.295126748128655 0.292692525863384 0.289045286899946 0.289221640324903 0.283295655660151 0.282366165811349 0.281269483252465 0.292682301721727 0.292657897078260 0.300216062571892 0.281269483252465 0.285581130217712 0.282536718552856 0.282006402253502 2 2|0 -|/ 16838768 16840087 16839762.556 16838375 16840358 - gene protein_coding_gene FALSE TRUE AT2G40300.1 ATFER4 (FERRITIN 4); ferric iron binding Identical to Ferritin-4, chloroplast precursor (EC 1.16.3.1) (FER4) [Arabidopsis Thaliana] (GB:Q9S756;GB:Q8WHW5); similar to ATFER3 (FERRITIN 3), ferric iron binding [Arabidopsis thaliana] (TAIR:AT3G56090.1); similar to ferritin [Chorispora bungeana] (GB:ABB22752.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) -1.25879979358957 -12.0739978328754 1.21625963407634e-07 0.00188082389813565 11.2045859472707 8.958305014728 -1.25879979358957 0.1081969552911
AT1G69930_at 2.69616646849471 2.63927214339083 6.30309085828124 6.78138469396333 2.44889427228856 2.22709397549794 0.963651215280547 0.965561344248808 1.29547213842887 1.18838548561483 0.592533012813951 0.996177199542614 0.961055029465737 0.713479049377336 0.79601370087306 1.09968846447463 0.432062728359030 1.04886437094506 0.757261672751692 0.252873043751876 0.257149862962114 0.275633054350055 0.284781980564162 0.261383998143070 0.248719204205542 0.246453940726587 0.248807270751045 0.252555289529704 0.262124022085087 0.247954478394027 0.246453940726587 0.253346905278022 0.248170582504379 0.252492377328671 0.246453940726587 0.262193084729718 0.247820696812546 0.259194015079524 1 1 - 26341417 26342167 26341781.364 26341160 26342458 - gene protein_coding_gene FALSE TRUE AT1G69930.1 ATGSTU11 (Arabidopsis thaliana Glutathione S-transferase (class tau) 11); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU13 (GLUTATHIONE S-TRANSFERASE 12), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G27130.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 1.18678212635184 12.0736998555223 1.21656534796530e-07 0.00188117499755874 11.2044574999957 4.08331801813735 1.18678212635184 0.0917680960226972
AT3G46670_at 4.68706320067925 4.76639554754012 4.13197644891862 3.8927382980885 4.14376388287347 4.29430364310937 7.38419770099311 7.30143265275676 6.37316671206242 7.10635758306197 6.31651129973382 6.84933224883581 6.37850911774846 6.27242379081244 6.86757181166812 6.71506425089857 5.80697597978979 6.61758554946275 6.50175588837711 0.207758267968935 0.205864684462567 0.218821037649578 0.212059490339630 0.205041119811089 0.206827490093916 0.214774101715592 0.213283101594064 0.211852407659313 0.20768995778281 0.209083009848964 0.205763891112033 0.203569883397603 0.213383078478566 0.204907037865036 0.206834689639795 0.205838676091198 0.203569883397603 0.203569883397603 3 3 - 17203792 17204322 17204104.455 17203574 17205382 - gene protein_coding_gene FALSE TRUE AT3G46670.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46660.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.05075333947997 -12.0605929980306 1.23009539625388e-07 0.00190197350168775 11.1988018126141 11.6444456638462 -1.05075333947997 0.0527861508965054
AT1G04990_at 5.93112503180028 5.47277831832562 6.12417702819093 6.02732706223458 5.57736423540485 5.20994572832081 4.06369778793951 3.81145590235203 3.28357232244503 3.82478256702284 5.28260060838963 5.15502183488117 4.54585212026542 5.21349186612415 5.49861846370891 4.79054390421795 5.01214017205571 4.84287051300332 3.13054321076819 0.242205202767924 0.250172418743138 0.248524394038158 0.250033793496453 0.248429643277907 0.247148845066042 0.239567423289479 0.242303298599330 0.255567690419619 0.259080000633559 0.241106044194316 0.23658014195485 0.245568918446471 0.239189319373726 0.238621180564899 0.247634043860654 0.23658014195485 0.240715441721331 0.237272815502477 1 0|1 /|- 1419367 1419978 1419719.444 1419079 1421788 - gene protein_coding_gene FALSE TRUE AT1G04990.1|AT1G04990.2 zinc finger (CCCH-type) family protein Identical to Zinc finger CCCH domain-containing protein ZFN-like 4 [Arabidopsis Thaliana] (GB:Q94AD9;GB:Q9MAU8); similar to ZFN2 (ZINC FINGER PROTEIN 2), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G32930.1); similar to Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] (GB:ABD28369.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 1.2723078276761 12.0389415578969 1.2528050939494e-07 0.00193696195575517 11.1894342147244 9.50503812119248 1.2723078276761 0.111896127768619
AT1G78410_at 6.5238197275314 6.26055323968177 8.12993094786902 8.63929576782228 5.73271110789492 5.54628955535747 2.88421883722238 2.79999797654951 3.51954520578439 2.87057392646854 2.8093924051159 3.58921417910254 2.64299149423281 2.81699493832174 3.01216041659622 2.55415028392702 3.47676337289329 3.28714792340673 2.41369759522905 0.34964543908379 0.365597508088442 0.37951908081787 0.371946698763689 0.367465111927602 0.35378443200602 0.33680487213666 0.330570503738011 0.330570503738011 0.332091336800312 0.330570503738011 0.330570503738011 0.330570503738011 0.332829632228499 0.331058688481976 0.330570503738011 0.335774990052081 0.330570503738011 0.333938368438404 1 1 + 29507631 29507900 29507755 29507475 29508134 + gene protein_coding_gene FALSE TRUE AT1G78410.1 VQ motif-containing protein similar to Avr9/Cf-9 rapidly elicited protein 169 [Nicotiana tabacum] (GB:AAG43552.1); contains InterPro domain VQ; (InterPro:IPR008889) 1.24195285018093 12.0367308740533 1.25514931470823e-07 0.00194046084053892 11.1884760046401 8.79370587125452 1.24195285018093 0.105351482505896
AT2G29460_at 4.24926869176194 4.85844156005178 7.43127042679419 7.33376092784622 4.34409884531106 3.97936431641941 1.83541820605773 1.67133593403457 1.79466488329158 1.69946765936818 1.73014851220266 1.73940562567400 1.95365569394084 1.54169231011485 1.51245605542404 1.57253214828969 2.31880777167277 1.84838773415619 1.64323357364343 0.347006685872141 0.341989480373625 0.36251065998579 0.356493482096144 0.327751648164174 0.330698094771914 0.314030924565187 0.318911840632797 0.312844319868716 0.311704778811438 0.312404552813823 0.317767137865657 0.320875982179659 0.316113234501784 0.319261650893885 0.311704778811438 0.312102256644518 0.317580713364346 0.31311983258062 2 2|0 -|/ 12633819 12634568 12634131.6 12633624 12634755 - gene protein_coding_gene FALSE TRUE AT2G29460.1 ATGSTU4 (GLUTATHIONE S-TRANSFERASE 22); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU1 (GLUTATHIONE S-TRANSFERASE 19), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29490.1); similar to ATGSTU2 (GLUTATHIONE S-TRANSFERASE 20), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29480.1); similar to glutathione S-transferase GST 13 [Glycine max] (GB:AAG34803.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 1.34159394522476 11.9913721560884 1.30431448927035e-07 0.00201633976896304 11.1687437257773 6.20766541530233 1.34159394522476 0.127233897921574
AT3G16650_at 3.70392171576312 3.69001960451109 4.95789441477016 5.06849017221081 4.94133028429884 5.13298041854261 3.33956831907032 3.48579859153258 3.59203009681109 4.02319138911385 4.36197307741742 4.40528376909469 4.60076964494243 4.16988488926016 4.56499193067179 4.65107363973178 4.78094427182695 4.1439169136836 4.02667328083889 0.202283661489373 0.195308932460821 0.204785649626399 0.200340318632580 0.202404150519604 0.197357145237955 0.194871568829131 0.198223985081363 0.198229346420197 0.199255353649150 0.19275747565467 0.196252434952857 0.197515690941266 0.200020389605924 0.196510797729265 0.203216189649812 0.193519980813146 0.196337038309241 0.193256145556063 3 3|0 +|/ 5673735 5675047 5674438.7 5671077 5675330 + gene protein_coding_gene FALSE TRUE AT3G16650.1 PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) Identical to PP1/PP2A phosphatases pleiotropic regulator PRL2 (PRL2) [Arabidopsis Thaliana] (GB:Q39190;GB:Q940Q7;GB:Q9LUR9); similar to PRL1 (PLEIOTROPIC REGULATORY LOCUS 1), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G15900.1); similar to PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95840.1); similar to Os03g0339100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050058.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 1.02478497144683 11.95931263962 1.34032406821939e-07 0.00207187294465353 11.1547140169109 8.46024361808738 1.02478497144683 0.0459614932583277
AT2G40150_at 3.35014346722201 3.66828470219373 1.90800501309869 1.89955439960503 2.05767324116011 2.24477155994802 5.49989560449173 5.60153087764367 4.02093410511344 4.67362292811905 5.25250163414994 6.01625943558238 4.65713857865002 5.25116364282367 5.55228268555075 4.68054374355161 3.5524346699383 4.49764937892659 5.08258951532036 0.283291814511833 0.275351477280063 0.304604683130936 0.304513066950347 0.289960847506407 0.291489194984031 0.286023752278836 0.291401410400555 0.280225583676271 0.275351477280063 0.276361082811075 0.283375200754306 0.278131464861667 0.287617141895679 0.275351477280063 0.275351477280063 0.281032082772014 0.277438387013795 0.280533834571709 2 0|2 /|+ 16783703 16784155 16783965.5 16782520 16784321 + gene protein_coding_gene FALSE TRUE AT2G40150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55990.1); similar to Os03g0291800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049800.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95402.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.08117403556956 -11.9539662245914 1.34643352451133e-07 0.00208118229883716 11.1523676317493 8.04117181016917 -1.08117403556956 0.066264519455454
AT3G03520_at 5.04781856440912 5.42862444631711 5.55305554329525 5.53314081538676 6.38926622571748 5.97269233451796 3.72177395312723 3.76739086306049 3.31369749561838 3.48556106328503 4.69701056033915 4.47623846020503 4.44271532730269 4.6018654574104 3.54957033993905 4.07575659791848 4.62062169824038 4.4614544580275 3.21442942502524 0.262805637550830 0.259027948948673 0.257896041434885 0.268360613469876 0.257896041434885 0.276109748536986 0.258632173100886 0.269651755114801 0.274408229461657 0.260888702641525 0.263921043596780 0.265321517575786 0.264551538393302 0.275333634090847 0.260621269496178 0.271416465553261 0.281655882810926 0.257896041434885 0.260194266136236 3 3|0 -|/ 838016 838722 838363.1 837884 840631 - gene protein_coding_gene FALSE TRUE AT3G03520.1 phosphoesterase family protein similar to NPC4 (NONSPECIFIC PHOSPHOLIPASE C4), hydrolase, acting on ester bonds [Arabidopsis thaliana] (TAIR:AT3G03530.1); similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT3G03540.1); similar to putative phospholipase [Oryza sativa] (GB:AAK82449.1); similar to Os11g0593000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068198.1); similar to Os03g0852800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051927.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) 1.19919744539042 11.9322878319514 1.37151746805062e-07 0.00211981739861904 11.1428338740783 9.02849539676178 1.19919744539042 0.0980510720970224
AT4G12080_at 3.50551403555482 3.94344412959205 4.8710594052772 4.88805987157822 5.3510755563606 5.43041849153804 3.10425736705958 3.03793855806906 1.99255803055801 2.56245875907151 3.34143858363690 2.0523922730236 3.31723353249396 3.22324721207242 2.49233840205711 2.79311690810573 3.87326516034945 2.79031290859884 2.90682701928659 0.245618883359301 0.24328805296007 0.247215874944824 0.246233841954103 0.249887758587828 0.255820897855412 0.244538278932626 0.252946791513932 0.250352689996127 0.24328805296007 0.261401780502186 0.24328805296007 0.24479755092885 0.246128280868190 0.257226372240689 0.24790463398714 0.249783203297433 0.247675410526646 0.24328805296007 4 4 + 7240583 7241172 7240899.364 7239213 7241488 + gene protein_coding_gene FALSE TRUE AT4G12080.1 DNA-binding family protein similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22770.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE87426.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 1.11775083076160 11.9163724199372 1.39025591256261e-07 0.00214864051286552 11.1358143517899 7.00282062296917 1.11775083076160 0.0779255887119458
AT4G39670_at 3.84312713773333 3.53452964354087 6.80622063066041 6.83851788833215 3.70473167373758 3.2479881195512 0.871693544935283 0.515584197473127 1.62152110278148 1.09803687058720 0.937683169634402 0.947168489211052 0.745883012245496 0.763320308924365 0.621995632327503 0.554487166319382 0.8672236115404 0.344675153666712 0.727578487623343 0.313683771524032 0.318505959274876 0.340092469911384 0.340826368482589 0.312818002706827 0.309682521465859 0.302734995617349 0.298953574739298 0.307599947154298 0.306883410234203 0.304992135180684 0.303200782457842 0.307711010586369 0.300288930507904 0.308635279553487 0.298953574739298 0.304479002033086 0.305825987547944 0.306934035617896 4 4 + 18410234 18410784 18410525.727 18410166 18410994 + gene protein_coding_gene FALSE TRUE AT4G39670.1 similar to ACD11 (ACCELERATED CELL DEATH 11) [Arabidopsis thaliana] (TAIR:AT2G34690.1); similar to Os03g0710700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051050.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98504.1); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 1.26594501406800 11.8991261151351 1.41087556258799e-07 0.00218036709442348 11.1281884481129 4.60622413198599 1.26594501406800 0.113704166373095
AT1G12010_at 2.89075605391559 3.36884804848064 2.14020496172563 2.18057542760862 2.24992290176251 2.69620334503109 4.59103618750116 4.43206859119652 3.3428065328851 4.13774831618648 2.80298055294925 2.82720103996540 2.83092388533719 2.33500381867212 2.44762839538739 2.81641250803964 2.91579057048197 2.73060571697033 3.82396971567693 0.243945716644151 0.234761054910286 0.236671410601742 0.238461225101982 0.232249464871601 0.239265553693862 0.255282705397996 0.253917257263992 0.23502031353767 0.240643492353256 0.236620118538488 0.244563200684744 0.240175395043697 0.237062621103768 0.246038045937666 0.231683933518944 0.241524174722193 0.231683933518944 0.238435606777639 1 1 + 4056989 4057638 4057310 4056205 4057931 + gene protein_coding_gene FALSE TRUE AT1G12010.1 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase similar to ACO2 (ACC OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT1G62380.1); similar to ACC oxidase [Brassica oleracea] (GB:CAA57285.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -1.27940355259114 -11.8937026534704 1.41742827037139e-07 0.00219035190620491 11.1257861452954 6.30944852259851 -1.27940355259114 0.116685392051229
AT2G43820_at 8.8565869948057 9.16368128394352 7.71110631526809 7.80652556755607 9.11618804452739 8.95317410880503 6.95055923947403 6.87021473509319 8.2036174133378 7.64012294316765 3.87422003008521 3.69005433948825 4.87200513489193 5.01707485084701 5.43110629891838 6.96129011421597 6.53477254258713 5.97620854611447 7.74183130123738 0.220853462089748 0.219747396051776 0.214472321016907 0.214741030156751 0.21912237372509 0.227556797572444 0.213991008220225 0.215074593125653 0.216103237058721 0.213306582692247 0.218055534708463 0.226064589739860 0.212888231952477 0.221923759028391 0.235104891985646 0.212730233566609 0.215540503123562 0.213544080543367 0.216184537195722 2 2 + 18160193 18160711 18160331.545 18159304 18160985 + gene protein_coding_gene FALSE TRUE AT2G43820.1 GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G43840.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.06538889569701 -11.8609705810065 1.45768370170176e-07 0.00225241285586956 11.1112450134132 14.7567288868797 -1.06538889569701 0.0639226820897445
AT4G18050_at 3.39929956088925 3.7907160785735 6.04751068419814 5.93273625022054 5.06901497091946 4.67708661753485 4.96689166313023 5.04054030799117 2.07260561480695 2.53820101929695 3.25546332883409 3.97132834769493 3.12988041409885 3.17441089049218 2.82793303657035 4.62019052617607 5.3037716265538 3.06122545212214 2.62881118192115 0.247107078927722 0.246215342547914 0.262627329425101 0.248642815462873 0.239742819382025 0.253644222306225 0.245528611177807 0.251762625813914 0.252110623907690 0.246802301544018 0.245778328177744 0.245862545296025 0.239585710483834 0.241720454316133 0.250649412873605 0.242059453338391 0.259147444760405 0.246382446363327 0.247799546061907 4 4 + 10026900 10027401 10027109.273 10022217 10027427 + gene protein_coding_gene FALSE TRUE AT4G18050.1 PGP9 (P-GLYCOPROTEIN 9); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 9 (P-glycoprotein 9) (MDR9) [Arabidopsis Thaliana] (GB:Q9M0M2;GB:Q9SVW6); similar to PGP11 (P-GLYCOPROTEIN 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02520.1); similar to (P-GLYCOPROTEIN 7, PGP7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G46540.1); similar to PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4), ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G47000.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE92210.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE80334.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE93334.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.19352237110750 11.8475235947968 1.47457960021145e-07 0.00227837294028671 11.1052499915335 7.90609021242855 1.19352237110750 0.0987188533159624
AT2G36470_at 5.57673656953683 5.68214824837264 4.98953217634656 4.72767120149206 6.32266470152515 6.13803091008135 2.84962593391173 3.46345154459568 4.14721405358624 3.67409607603126 5.39790247017533 5.42645388082885 5.01631289499413 5.57420331656995 5.2142265924752 5.00091596838199 4.75351828646363 5.65179987369391 3.63294620279986 0.222221773821388 0.206244852941540 0.207000888554048 0.211475330599370 0.211987473239481 0.214350629839185 0.217311619577665 0.212775151966917 0.206122857666966 0.203661399784665 0.209032186849459 0.202861795012021 0.205084569582381 0.202861795012021 0.208523442411442 0.202861795012021 0.222997623980201 0.21228958482335 0.204532118905541 2 2 - 15306471 15307031 15306845.636 15306441 15308069 - gene protein_coding_gene FALSE TRUE AT2G36470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27770.1); similar to Os11g0150200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065758.1); similar to Os07g0572300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060057.1); similar to H0321H01.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66493.1); contains InterPro domain Protein of unknown function DUF868, plant; (InterPro:IPR008586) 1.29390769478291 11.8281460602414 1.49930211145617e-07 0.00231642176219978 11.0965891371661 9.50498371302625 1.29390769478291 0.12120676375606
AT2G12550_at 7.40283392356638 7.02572362203014 7.9159114555383 7.8332484364526 7.36815940683833 7.22260686637374 5.47462649514651 5.18648391545339 4.79293502576353 4.70862028482444 5.55558521163898 6.01049907342309 5.77165970873313 5.89572225991394 5.6503364260241 5.84957500168249 5.86394464717666 5.73313573165418 4.9495474743736 0.293386496645557 0.290554850257559 0.294978551437312 0.297075083570108 0.299190377205181 0.29440791078146 0.299266767765206 0.287480738268439 0.287047039651199 0.304844364043081 0.289943913560924 0.288117816779117 0.284964770760058 0.289216243635528 0.281700190621349 0.288438141980621 0.29140276717126 0.288718030180321 0.28339017723973 2 2 + 5124897 5125526 5125210 5121950 5125829 + gene protein_coding_gene FALSE TRUE AT2G12550.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to H0413E07.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86152.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 1.14341877406430 11.8222796397641 1.5068751314157e-07 0.00232797139052412 11.0939620246653 12.2328700247673 1.14341877406430 0.0870891543451082
AT3G22840_at 4.27359432274342 4.76803007854587 2.72748893357074 2.96630722799242 2.41923821547627 2.47407878980568 4.65246622775922 4.73177715217807 2.67612824862926 3.75600297807867 2.37911881836295 2.70897377979832 2.64934103007359 2.84062494437672 2.27334163954838 3.19516036603619 3.23808317823426 2.41039642206885 2.90957714681235 0.29824961119826 0.297607666149801 0.285756915064819 0.269627382035911 0.276773031143716 0.297903711723859 0.304771854618237 0.285018121472227 0.276571464789860 0.269627382035911 0.271239592559801 0.271547931896122 0.273156599308506 0.269627382035911 0.295605631803171 0.272346522381018 0.274934199548876 0.275397556839593 0.276982957881284 3 3 - 8084653 8085412 8084993.909 8084471 8085567 - gene protein_coding_gene FALSE TRUE AT3G22840.1 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN); chlorophyll binding Encodes an early light-inducible protein. similar to ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT4G14690.1); similar to ELIP [Brassica rapa subsp. pekinensis] (GB:AAR11456.1); contains domain EARLY LIGHT-INDUCED PROTEIN (PTHR14154:SF1); contains domain UPF0041 BRAIN PROTEIN 44-RELATED (PTHR14154) -1.18085571122819 -11.8158171409631 1.51526572575140e-07 0.00234078249314077 11.0910652281523 6.53951402525188 -1.18085571122819 0.0964767886248376
AT1G73830_at 4.20105337639787 3.70246877976265 3.51076201311178 3.79179717930810 4.90309625054956 4.86285117366222 3.72455918736101 3.56630509067844 5.81380481360766 4.99698596918778 7.95992058959335 7.85629057806297 7.67919869836702 7.95597439140766 7.57326220444416 8.04963890522105 7.82551608144007 6.91818498313714 6.52466678687967 0.289252050110127 0.288421642290839 0.300942936538282 0.302627645863121 0.284798423522427 0.287744060533152 0.290419253279040 0.301750533715082 0.297642845582094 0.302037867408048 0.291162436994067 0.28522590409101 0.292525211495766 0.29420971660103 0.297932205847291 0.287256251036939 0.318410235472725 0.284798423522427 0.287642209126491 1 1 + 27763887 27764978 27764409 27763636 27765108 + gene protein_coding_gene FALSE TRUE AT1G73830.1 BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor similar to BEE1 (BR ENHANCED EXPRESSION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G18400.1); similar to putative bZIPtranscription factor protein [Brassica oleracea] (GB:AAW81732.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 1.20864624650436 11.8143953211225 1.51711854498605e-07 0.00234349301643995 11.0904275146853 10.7857287116127 1.20864624650436 0.102997534667490
AT4G32710_at 1.96843424447951 1.94159355389225 0.831609392279279 0.667495408244173 1.46746097470453 1.35463372347915 2.43095826131715 2.49082418907794 2.81216146517172 2.93455633957336 2.19884096411805 2.05688613411126 1.46224612658946 1.8850061529353 2.33278756225462 1.81542263525505 1.59108919030101 2.42582949171701 2.72713942574425 0.229517752106663 0.233517428254029 0.240192132396765 0.248232351577053 0.228123795433145 0.233269648225996 0.244074391931638 0.242307884087721 0.263753545187256 0.234304015900181 0.232504612785023 0.23201555413411 0.238956086743151 0.244192376486809 0.236827657444923 0.233233927217980 0.240969794807659 0.234936001800649 0.233083464854547 4 4|0 +|/ 15782232 15783201 15782694.889 15781051 15783466 + gene protein_coding_gene FALSE TRUE AT4G32710.1 kinase similar to ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G24550.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.990629116092242 -11.7981028451560 1.53852622459869e-07 0.00237640760651513 11.0831100536816 4.04194252292925 -0.990629116092242 0.0362869428873206
AT2G38080_at 1.43849488531489 1.23452037548008 3.0165967545375 3.02614618372824 1.92440822576592 2.05750946723526 1.91282059040888 1.68419968335686 2.07169335507395 1.65863074986816 2.87207423293794 3.06283124610944 3.10661255497951 2.72642341504773 3.62917127512821 2.49876783558303 4.73098356887594 3.19643767587029 2.52294637568445 0.228542564753182 0.225894765675749 0.227012624837471 0.228827971213910 0.219816379043184 0.224143022273625 0.227179213963586 0.231872198766094 0.219297272034981 0.219297272034981 0.224012933281619 0.228205951869290 0.223859251769905 0.221142835746201 0.221190228214978 0.222839511727700 0.239633551815837 0.242252218113999 0.233441020269641 2 2 + 15943616 15944405 15943889.182 15941538 15944694 + gene protein_coding_gene FALSE TRUE AT2G38080.1 IRX12/LAC4 (laccase 4); copper ion binding / oxidoreductase Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype. similar to LAC10 (laccase 10), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G01190.1); similar to LAC16 (laccase 16), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G58910.1); similar to LAC11 (laccase 11), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G03260.1); similar to diphenol oxidase (GB:AAC49536.1); similar to laccase [Populus trichocarpa] (GB:CAA74103.1); similar to laccase (EC 1.10.3.2) precursor - common tobacco [Oryza sativa (japonica cultivar-group)] (GB:AAX95423.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 1.04107275310044 11.7911563891662 1.54775309968390e-07 0.00239050466246178 11.0799845963502 4.6930051302828 1.04107275310044 0.0578324379278635
AT1G53035_at 6.29516449401314 7.09183818759946 5.47993001340074 5.72748432277265 7.21943186772233 7.12101147963002 3.06055000827797 3.72234083331438 2.83245488442268 2.69280877608893 4.50433052867866 5.18018280126125 4.98214373180814 5.03812874557543 4.64837558010036 4.31881601591054 4.56277221092486 4.29818812114159 2.79248538016412 0.311294622475776 0.301751446765004 0.303785831194162 0.309434287389194 0.306422652086572 0.334616281719616 0.303739238743823 0.302496718240824 0.311229672312762 0.324245721543091 0.303486635099107 0.302548690727130 0.306744187111627 0.304556080969273 0.321306875712412 0.301751446765004 0.317383204472927 0.310790527591845 0.315598645024545 1 1 - 19765599 19765945 19765765.9 19765368 19766219 - gene protein_coding_gene FALSE TRUE AT1G53035.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15358.1); similar to unknown [Musa acuminata] (GB:ABC41688.1) 1.63176262172336 11.7896224512599 1.5497986918241e-07 0.00239350909965314 11.0792939723466 9.44681901608318 1.63176262172336 0.185065419591053
AT2G46620_at 7.72067640939209 7.720715105794 7.97504322801133 8.02287000482633 7.46504455325515 7.59770843359729 4.47365562433231 5.06993110010705 5.42601576109155 5.13971489283316 6.04514334160072 5.73996967144605 5.35921331410246 5.76153113541287 6.43497848491988 5.46283779243012 6.28847628185468 6.49427088889729 4.52585443488028 0.235147789774243 0.238694846988196 0.241962537209477 0.239986692993527 0.242476262198009 0.242994686131509 0.237066859607785 0.237866101336584 0.249689192897326 0.243563274605483 0.239885949153672 0.237200364133795 0.238544365373119 0.235022564972397 0.243628818091067 0.235662431160649 0.238322461946819 0.234960606510762 0.24306002617810 2 2 - 19146229 19146715 19146450.545 19145871 19147817 - gene protein_coding_gene FALSE TRUE AT2G46620.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28580.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE93512.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 1.21834812295709 11.7786192385085 1.56455839392647e-07 0.00241614752774064 11.0743352154269 12.4951210457984 1.21834812295709 0.106034865872021
AT2G34070_at 7.53325196423759 7.56887417358087 9.21519337903533 9.31797967414968 9.2179731995477 8.99188590198813 8.61410154992587 8.52443673696209 9.15742795620933 8.43965481081053 9.69268545600757 8.60252700107451 9.72397197046323 9.61563206489185 8.85036574268837 9.53635938711077 9.76372596446509 9.49504662499136 7.95860394944658 0.146697041098270 0.136810065804149 0.133091608191399 0.129268165646244 0.127516960340857 0.130530503563074 0.129101189070078 0.122645266072387 0.132176712995060 0.130947628286357 0.129324909300375 0.122645266072387 0.126870995374509 0.129269508923152 0.125322222662021 0.126621342259750 0.129174734739121 0.125521092532979 0.140597278548197 2 2 - 14394712 14395404 14394988.273 14394500 14397309 - gene protein_coding_gene FALSE TRUE AT2G34070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29050.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 1.00853448507153 11.7656870176818 1.58210097999180e-07 0.00244308033330333 11.0684963662394 17.5872628300703 1.00853448507153 0.0461083389124439
AT3G59010_at 4.94079925555374 5.6389329468067 6.67882166511194 7.23915733923898 6.65655971063611 6.75099738605057 4.38269862766486 4.91175143984184 5.18853568926625 4.89657133581787 5.81680388506957 5.4411398031171 7.00450861826859 6.35504071575937 4.74431013678146 7.44918102182238 8.46487518573912 6.16197369147131 5.1749557892044 0.252727442326161 0.249561054501612 0.265048942733779 0.251018892776308 0.251741091648251 0.267027417143954 0.250216197142864 0.254067159886261 0.267527158749194 0.248331354734996 0.252733617241562 0.247636861309915 0.250493932970089 0.257320663597405 0.255112312886323 0.253375952213088 0.266864634242097 0.255207876079134 0.258971252168719 3 3 - 21814000 21814534 21814270.364 21813782 21816191 - gene protein_coding_gene FALSE TRUE AT3G59010.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G43050.1); similar to putative pectin methylesterase LuPME1 [Linum usitatissimum] (GB:AAK69695.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 1.60293999264170 11.7634359376691 1.58517633178707e-07 0.00244767077391242 11.0674788224331 11.6581731648713 1.60293999264170 0.180689462390455
AT4G33150_at 5.29702605606145 5.36588563690491 6.64958388362734 6.38830921127738 6.92078893397135 7.13532762489759 3.67110423549076 3.23136352153049 3.36269415857852 4.3208493191552 3.73815303022780 3.15001886316701 3.72976013699065 3.43804369194773 3.36377299514654 3.93416741562917 4.80897714232848 4.15113054340733 3.77139245954887 0.220002339285461 0.230601008476219 0.231450628505146 0.235689214799175 0.218718463077092 0.220926114775067 0.21783523234818 0.228288290798269 0.220991117819108 0.224009135446516 0.21783523234818 0.219612905708621 0.218418899187150 0.221936959042218 0.220007735967156 0.21849570857512 0.232647352782037 0.221017828522756 0.222300977618743 4 4|0 -|/ 15985653 15986421 15986030.889 15985192 15991541 - gene protein_coding_gene FALSE TRUE AT4G33150.1|AT4G33150.2 LKR (SACCHAROPINE DEHYDROGENASE) Identical to Alpha-aminoadipic semialdehyde synthase (LKR/SDH) (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] (LKR/SDH) [Arabidopsis Thaliana] (GB:Q9SMZ4;GB:O04155;GB:O04156;GB:O04884;GB:Q7DM71;GB:Q947M5;GB:Q94BT4); similar to bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase [Gossypium hirsutum] (GB:AAN14410.1); similar to lysine ketoglutarate reductase/saccharopine dehydrogenase biofunctional enzyme [Zizania latifolia] (GB:ABF18958.1); similar to lysine ketoglutarate reductase/saccharopine dehydrogenase [Zea mays] (GB:AAG21985.1); contains InterPro domain Alanine dehydrogenase/PNT, C-terminal; (InterPro:IPR007698); contains InterPro domain Saccharopine dehydrogenase; (InterPro:IPR005097); contains InterPro domain LOR/SDH bifunctional enzyme conserved region; (InterPro:IPR007545); contains InterPro domain Alanine dehydrogenase/PNT, N-terminal; (InterPro:IPR007886) 1.17654927460395 11.7623183106902 1.58670560693725e-07 0.00244987345711112 11.0669734962432 9.38620611619505 1.17654927460395 0.0967257678471417
AT3G03770_at 4.04927014116183 4.1454089863935 4.00475480338569 3.84753830274266 3.579714505971 3.30711045179883 7.43570165020416 7.12519794972311 4.94180839160804 7.00383289654675 5.92135173452823 6.17215518222618 5.47578272829223 5.20171912714976 5.70646254424171 6.43650974385053 5.39292861438437 5.72659612807935 5.92803295350114 0.250951095328366 0.247892218610681 0.246915038290972 0.246915038290972 0.246915038290972 0.250954035141863 0.254328169454261 0.249651474999729 0.267890185679356 0.247713551433428 0.248929303512082 0.251504632956925 0.251605965597567 0.259185919005470 0.253676200699947 0.249111318602856 0.258891569925858 0.251788580959434 0.259405324001443 3 3|0 -|/ 945460 946279 945774.5 945146 949045 - gene protein_coding_gene FALSE TRUE AT3G03770.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G14210.1); similar to putative brassinosteroid LRR receptor kinase protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07439.1); similar to transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAQ01159.1); similar to Protein kinase [Medicago truncatula] (GB:ABD28527.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -1.10390917721869 -11.7546950106042 1.59717955463251e-07 0.00246588551439714 11.0635243583888 10.5428769185373 -1.10390917721869 0.0782936525604936
AT3G15040_at 6.60362592222779 6.82459502034853 7.02270579754482 6.99071440395232 7.25679958132948 7.38529541724844 5.62441316639132 5.30815810446486 5.38682812458181 5.42729832612658 6.78462722704586 6.63634026968614 6.99853837962986 6.67771838911526 6.81307575224158 6.36862394876557 7.03264175487204 6.32038391138432 6.05587695511574 0.210205999433384 0.199917845902649 0.194987399092625 0.194987399092625 0.202231714768572 0.201200226815698 0.204632565165765 0.202628405545445 0.219270120291019 0.226175321736461 0.195934796224642 0.197588188649988 0.196754852584281 0.21111877515777 0.214717416700036 0.194987399092625 0.198561752303139 0.197301438293506 0.205448037454831 3 3 - 5065544 5066013 5065740.091 5064711 5066697 - gene protein_coding_gene FALSE TRUE AT3G15040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21970.1); similar to Os04g0413900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052750.1); similar to Os01g0862600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044884.1); similar to hypothetical protein LOC_Os10g27350 [Oryza sativa (japonica cultivar-group)] (GB:AAP53748.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 1.07716999107259 11.7544383561399 1.59753348535157e-07 0.00246627219468576 11.0634081653480 12.7907025130388 1.07716999107259 0.0705883239901475
AT2G18660_at 10.4358473289195 10.4574406184428 11.7122770185518 11.7533634300411 10.4768782335351 9.9632458843882 2.09582502128793 1.8501099251162 6.83090508883491 3.88247354718804 1.68252465226006 2.21831449409678 2.14453539008680 1.93761607412028 2.80182748783784 2.40869073997141 2.66295138314712 2.38214257986518 3.32212589662159 0.258676255425479 0.261235237324627 0.258770643758627 0.251945595743955 0.260127823547445 0.265555817200834 0.253034370105654 0.256762539867133 0.297597654177270 0.268659766395043 0.252512879902859 0.258532847003846 0.265865392740023 0.251945595743955 0.255620819143887 0.25345804745601 0.257280064105249 0.255161490672292 0.264519392768789 2 2|0 -|/ 8098249 8098663 8098421.5 8097740 8098738 - gene protein_coding_gene FALSE TRUE AT2G18660.1 expansin family protein (EXPR3) Identical to Expansin-like B3 precursor (AtEXLB3) (AtEXPR3) (Ath-ExpGamma-1.2) (EXLB3) [Arabidopsis Thaliana] (GB:Q9ZV52); similar to expansin-related [Arabidopsis thaliana] (TAIR:AT4G30380.1); similar to immuno-reactant natriuretic peptide-like protein [Erucastrum strigosum] (GB:AAM18791.1); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132) 1.18397962873956 11.7468323920914 1.60806097123861e-07 0.00248236372130105 11.0599626925537 12.0722868630627 1.18397962873956 0.098860793757815
AT1G70420_at 9.51619134386642 9.9153226839975 9.82846913242329 9.87539882995637 10.9250849859586 10.3466105725288 8.36573742156524 8.53380055703521 6.91267915796607 7.48864642883971 8.72912414353788 8.676765374376 9.3010622225487 9.18212076697834 8.03556725560932 8.29046312185793 8.9017401049018 8.3549424624334 7.3059051485077 0.169556722602236 0.169556722602236 0.169556722602236 0.169556722602236 0.179488520314636 0.176124345300532 0.178372737771750 0.173930210416873 0.199012608821022 0.187354635235261 0.176010450213867 0.171236600001875 0.169556722602236 0.186132296008096 0.178572381793677 0.174052196168386 0.188688242819539 0.175821893939952 0.177802196950348 1 1 - 26543690 26544078 26543864.091 26543237 26544425 - gene protein_coding_gene FALSE TRUE AT1G70420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23710.1); similar to Protein of unknown function DUF1645 [Medicago truncatula] (GB:ABE93113.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 1.30467874084664 11.7452262439505 1.61029367044727e-07 0.00248564930970241 11.0592345966715 17.6231853209006 1.30467874084664 0.125316682269636
AT2G13810_at 3.00711455896355 4.12045956875655 8.89674498958321 9.04494127197278 2.26054506605319 1.85294765792515 0.846637253312486 0.533166477834826 1.26228230640998 0.789885376383803 0.932458728799293 0.76615753110295 0.675863090641693 1.24817631679751 0.719708911462154 1.1924832881564 0.96881479118751 1.62395855013964 0.394342391677143 0.282673512691611 0.280536643896036 0.271657738018686 0.270233183598367 0.257121008492906 0.267311955642531 0.25947675527183 0.257121008492906 0.261084010957022 0.259533948093482 0.263915319757252 0.260979445200982 0.267132238779259 0.258076761415325 0.259522602873067 0.259799757685988 0.257406628192601 0.257121008492906 0.257121008492906 2 2 + 5778499 5779195 5778778.182 5775528 5779341 + gene protein_coding_gene FALSE TRUE AT2G13810.1 ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); transaminase similar to AGD2 (ABERRANT GROWTH AND DEATH 2), transaminase [Arabidopsis thaliana] (TAIR:AT4G33680.1); similar to Os03g0299900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049852.1); similar to putative aminotransferase AGD2 [Oryza sativa (japonica cultivar-group)] (GB:AAR01225.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 1.79369978727282 11.7345858605519 1.62517006204489e-07 0.00250844999076629 11.0544065616573 4.73604761014665 1.79369978727282 0.213769714405599
AT3G14050_at 9.26440059617438 9.38120320254898 10.0793397663736 10.2700892374914 10.0374775553875 9.99272964226574 7.68065473429951 7.91464277186115 8.4683064626692 8.05120749932524 8.55545586148708 8.53950426259823 9.30680151324525 8.88344644330257 7.78322812703675 9.6148203318049 9.10192675787493 8.34305197409879 8.18843821597139 0.157882841732740 0.160182292742065 0.160577942388463 0.157057545351619 0.158931488328118 0.162631592287887 0.16289075701904 0.158687598690449 0.156918670407933 0.158242824302753 0.161916930221822 0.157565325005362 0.153361582497385 0.15929541904653 0.162988723083543 0.155982601747674 0.162841164330734 0.163665779442835 0.156677445344156 3 3 - 4650941 4651489 4651268.909 4650764 4653921 - gene protein_coding_gene FALSE TRUE AT3G14050.1 RSH2 (RELA-SPOT HOMOLOG); catalytic similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT homolog 1 [Medicago truncatula] (GB:CAJ00006.1); similar to RSH2 [Nicotiana tabacum] (GB:AAQ23899.1); similar to RSH-like protein [Capsicum annuum] (GB:AAK82651.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) 1.03236453688384 11.7331879844858 1.62713550102307e-07 0.002511320932279 11.0537716914629 17.8285739224268 1.03236453688384 0.0565496958560121
AT4G29210_at 6.91436352012687 7.14271752962513 7.69622847282101 7.68771734673217 7.06979876590786 7.37507592635046 5.55912691737744 5.35360381824025 4.67694539913966 5.06445376043507 5.64737728641103 5.38008736619607 6.11430932254981 5.7575697086332 5.52400468804697 5.65729855652128 6.24978534391823 6.13253733712169 4.78689736555348 0.226461538731898 0.227297605391416 0.230075809207516 0.229424325456194 0.227027217124084 0.228461548786905 0.231502866361148 0.237105863763615 0.239869318103606 0.229193346981061 0.224421581676503 0.224421581676503 0.227736417286103 0.238811231310081 0.236892145414264 0.226240954905631 0.2281520227802 0.23497775863051 0.232997996720022 4 4|0 +|/ 14402544 14403266 14402836.1 14400926 14403525 + gene protein_coding_gene FALSE TRUE AT4G29210.1|AT4G29210.2 GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase|GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3); gamma-glutamyltransferase The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism. similar to gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase [Arabidopsis thaliana] (TAIR:AT4G39650.1); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAD22536.1); contains InterPro domain Gamma-glutamyltranspeptidase; (InterPro:IPR000101) 1.08992893720458 11.7312159261337 1.62991263874825e-07 0.00251544417538018 11.0528758133839 12.1751473919231 1.08992893720458 0.0749652114058754
AT3G23340_at 5.39842793202078 5.6308639650365 6.2314330491098 6.00284735128399 6.72022117844152 6.71905496689746 5.73146570927074 5.52603990349548 3.84001091527324 4.52021415997439 5.93642571523791 6.09168304876359 5.85803450595316 6.15798365059363 4.93229884996496 5.15702682212651 6.10070733732814 5.75246757247218 5.0613978227267 0.229920334330871 0.227851905330596 0.233562650004709 0.227851905330596 0.232785889342145 0.241433939780626 0.234955310220882 0.227915516567021 0.253390863828809 0.240150164811429 0.227851905330596 0.229274543675553 0.232600274937843 0.236280342855404 0.234093400577447 0.227851905330596 0.231358773103062 0.233281385116042 0.244023251803722 3 3 + 8352802 8353763 8353435.455 8350810 8353966 + gene protein_coding_gene FALSE TRUE AT3G23340.1 CKL10 (Casein Kinase I-like 10); casein kinase I/ kinase similar to CKI1 (CASEIN KINASE I), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G14340.1); similar to CKL13 (CASEIN KINASE LIKE 13), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT1G04440.1); similar to CKL8 (Casein Kinase I-like 8), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G43320.1); similar to Os02g0810400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048470.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.06057194872878 11.7115443045723 1.65789839074192e-07 0.00255846879659294 11.0439243386856 11.1061456255094 1.06057194872878 0.0666831184685527
AT1G72970_at 3.91864138506623 4.41320797550834 2.11483346133123 1.97439830719847 2.48316821018221 2.55790032252929 6.40102864724889 6.92931212551502 6.50489922286398 6.40348620779088 7.93495112846258 8.81684699574064 6.51206970708973 7.11160618201283 8.16891298762429 6.89559324355166 4.23104063303482 6.52111437787642 6.6473409140045 0.278857368568287 0.274754622140408 0.308083003399176 0.295149961578171 0.275713067789586 0.287034568767242 0.272103660850362 0.278468802391047 0.275237208888349 0.275218695256298 0.273246261161723 0.272103660850362 0.272103660850362 0.276172051799998 0.272103660850362 0.272103660850362 0.276393151840761 0.278087561604210 0.277275099359586 1 1 + 27458766 27459191 27458990.091 27456427 27459625 + gene protein_coding_gene FALSE TRUE AT1G72970.1 HTH (HOTHEAD); aldehyde-lyase Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. Identical to Protein HOTHEAD precursor (Protein ADHESION OF CALYX EDGES) (HTH) [Arabidopsis Thaliana] (GB:Q9S746;GB:Q9SXZ3); similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12570.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os09g0363900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062996.1); similar to putative mandelonitrile lyase [Oryza sativa] (GB:AAF65820.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) -1.31376549965999 -11.6993327124487 1.67553322998178e-07 0.00258551532718488 11.0383538270804 10.6203574818944 -1.31376549965999 0.128222466683990
AT3G60980_at 6.93614386431718 7.30812743795265 6.81807404595176 6.98113838681779 8.1193582503829 7.94144125335518 6.54913172372876 6.6466301933054 4.43286370128853 5.85578774386406 6.31463894823598 6.75967598343759 7.46703008124451 7.1942445578831 6.41008165153585 6.58967102243414 7.23291319950079 6.33670377948839 5.29895712090267 0.218676033488517 0.19869095659946 0.200631077239403 0.200985775514265 0.205423717246481 0.207092318818970 0.202035486213599 0.200259875674935 0.217285679016017 0.207619009319578 0.196420857271888 0.196100224552969 0.202678567143794 0.198005119271637 0.202048143738077 0.198268457784787 0.206150685932710 0.202318950826179 0.203559897792728 3 3 - 22576416 22576948 22576746.818 22576284 22577720 - gene protein_coding_gene FALSE TRUE AT3G60980.1 pentatricopeptide (PPR) repeat-containing protein similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to ACT11D09.4 [Cucumis melo] (GB:AAS80150.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 1.09862253012627 11.6879239116211 1.69219280938162e-07 0.00261105350487585 11.0331400238319 13.1545003569707 1.09862253012627 0.0785679928594767
AT4G14630_at 1.86116582532301 1.70148530128948 5.47171071319404 6.4299405736195 2.86567701096911 2.34666470722601 0.515374716133051 0.625595159032953 0.494089441565529 0.276731915491215 0.542909808990135 0.210831257684262 0.52871400462469 0.664307523667281 0.686020200759329 0.572958461816143 0.794887896363864 0.507884916416127 0.308125944895513 0.283313217309488 0.284622207746878 0.330764669616205 0.351125469550192 0.292744891123234 0.302451108268454 0.280804214680877 0.279065935284680 0.281444990512554 0.279065935284680 0.289708796241992 0.279065935284680 0.285122943657753 0.284248513476059 0.279120424545318 0.279065935284680 0.290526246471176 0.286759977555172 0.289812315674280 4 0|4 /|+ 8393177 8393509 8393326.8 8392836 8393808 + gene protein_coding_gene FALSE TRUE AT4G14630.1 GLP9 (GERMIN-LIKE PROTEIN 9); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. Identical to Germin-like protein subfamily 1 member 8 precursor (GLP9) [Arabidopsis Thaliana] (GB:Q9LEA7;GB:O23319); similar to manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G38940.1); similar to germin-like protein 3 [Vitis vinifera] (GB:AAQ63185.2); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 1.65325407947351 11.6743051952517 1.71231514063115e-07 0.00264193103047981 11.0269042532286 3.18880843056888 1.65325407947351 0.191553976192353
AT4G32020_at 10.4027243558234 10.5292254607851 11.5425204230042 11.4228776332841 11.9709287004185 11.6756089721094 11.2298601872907 11.1265148850476 10.3463398549312 9.87488354481962 11.3150723750942 11.1498894298313 11.6587730582261 11.4073710399541 10.9338748628820 11.3530942694021 11.6170510994642 11.3192277209074 10.0573650197033 0.0917027099848417 0.0885622458791642 0.0907055701501134 0.0953806199062514 0.0885359465531532 0.089344338419374 0.0880978762920486 0.0882822941842702 0.0922609103609874 0.0978450367244187 0.0895790615706935 0.0880978762920486 0.0899992915093242 0.0959776523923376 0.0897697711532598 0.089032334652977 0.0988403788025956 0.0880978762920486 0.0966047236991335 4 4 + 15488089 15488494 15488328.727 15487950 15489456 + gene protein_coding_gene FALSE TRUE AT4G32020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25250.1); similar to Os02g0797600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048398.1) 1.04116706772642 11.6569439258749 1.73834466615785e-07 0.00268191815094834 11.0189357866032 21.9561110964478 1.04116706772642 0.0619649090316143
AT1G03870_at 6.00841684718571 6.36950198794542 4.10670032022447 4.70738092586233 5.06039576202304 5.30814156234905 7.23170508634415 7.56816184626922 9.43315991445768 8.32886431190072 9.70358517518997 8.02210240229435 8.71947284986216 9.04683063765363 8.67770975984959 7.9934760504079 6.16728612025233 8.29966860507386 9.45568837651017 0.248414523201624 0.240381973371032 0.254357679202698 0.243611013019253 0.243645806253013 0.251829432444283 0.235930546261572 0.240268596648698 0.249169766699698 0.235214126616907 0.235214126616907 0.235214126616907 0.239377466418571 0.235214126616907 0.238727186342264 0.239755655476848 0.241970407843482 0.245164811106185 0.235547024211341 1 1 - 982693 983186 982915.273 982508 983539 - gene protein_coding_gene FALSE TRUE AT1G03870.1 FLA9 (FLA9) fasciclin-like arabinogalactan-protein 9 (Fla9) Identical to Fasciclin-like arabinogalactan protein 9 precursor (FLA9) [Arabidopsis Thaliana] (GB:Q9ZWA8;GB:Q8H794); similar to fasciclin-like arabinogalactan-protein, putative [Arabidopsis thaliana] (TAIR:AT5G44130.1); similar to unknown [Brassica rapa] (GB:ABK78690.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.37129810843564 -11.6329740575963 1.77499058072870e-07 0.00273827796889017 11.0078989093293 14.4957192011233 -1.37129810843564 0.141204631542089
AT4G12390_at 6.96827730697238 7.41962982867782 5.52738391062655 5.76358712149604 5.20386285063069 6.11788224501433 7.98521285471395 8.55306932459363 7.98965514439174 8.5593774488435 6.86247006050363 7.03572841427103 7.27069462320546 6.91889687500197 6.98325470798024 7.4402595522851 6.89090241386169 6.15303459260582 8.4278655360168 0.211585798563333 0.209950447722322 0.216165602720005 0.207690587492295 0.215002225995917 0.206589786761549 0.217779841890630 0.214873554680625 0.207812607509934 0.207525646505311 0.205601375324 0.205788343953156 0.205601375324 0.205601375324 0.211418899333867 0.208006981134668 0.218354170828814 0.212064667012866 0.209125999659657 4 4 + 7336653 7337145 7336882.364 7336494 7337353 + gene protein_coding_gene FALSE TRUE AT4G12390.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -1.72979792579193 -11.6173741985943 1.79929001909961e-07 0.00277558478346306 11.0006939791103 14.3273821126982 -1.72979792579193 0.206029806783323
AT3G13310_at 8.5905302309594 8.56822858038196 8.63244600152184 8.48968270831765 9.04149076802655 9.424447972587 3.56583950933903 4.98784339064727 3.31280842891081 3.08702788260247 4.23377158130422 6.24511588945922 4.90506927349691 5.24335014814152 4.55388433778146 6.24191715603561 3.91037960827036 2.93613008905924 3.15350692611342 0.222514539464959 0.219232087635698 0.227426809618287 0.221472614222194 0.218966694029481 0.222553668989421 0.218966694029481 0.230372015838351 0.229388677327424 0.230609973719396 0.219034935176000 0.224372123801551 0.222757321249664 0.225637445465583 0.228314160846577 0.220254148463904 0.225558341583061 0.227146847289666 0.224955983881487 3 3 - 4310887 4311282 4311103.818 4310615 4311448 - gene protein_coding_gene FALSE TRUE AT3G13310.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT2G17880.1); similar to Os06g0716100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058589.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 2.03408047467468 11.6144079893723 1.8039511130399e-07 0.00278259459186405 10.9993220413046 11.6466386483822 2.03408047467468 0.256075879743510
AT3G46440_at 8.24947283173707 8.47837893996876 9.0305587638205 9.01465924262756 8.65198813670114 8.51191502553783 5.69643078310996 6.48951578895213 5.5520435720849 5.46829428658302 6.58687600242293 6.21970128794954 6.51555601794935 6.67351290506808 5.98155486965084 6.21756533572337 7.47137433751693 6.37696366654941 4.91018287726135 0.211142269724568 0.209902587895757 0.215428790872157 0.216124274734424 0.211289259784880 0.212529855585318 0.216612525951200 0.211151382824404 0.228443470231760 0.222581678329921 0.215944121304320 0.211118624896922 0.210771447077599 0.212258680398709 0.209902587895757 0.212218299686660 0.217872419771492 0.219690239989577 0.209902587895757 3 3|0 -|/ 17100253 17101258 17100732.9 17100030 17102860 - gene protein_coding_gene FALSE TRUE AT3G46440.1|AT3G46440.2 UXS5 (UDP-Xyl synthase 5); catalytic encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UXS6 [Arabidopsis thaliana] (TAIR:AT2G28760.3); similar to UDP-glucuronic acid decarboxylase 3 [Populus tomentosa] (GB:AAX37336.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 1.38452259022025 11.5835101296354 1.85329069479466e-07 0.00285851556765128 10.9849935843544 13.9231457548053 1.38452259022025 0.144917664279886
AT2G22170_at 3.56093381751457 3.41228816625263 0.921385885121865 1.13935691965626 0.845948560471202 1.20605521704407 3.35293541987294 3.70359519736673 4.96750589935192 5.05978397617853 6.69170481082713 7.98331512098418 4.39523808340373 5.91692185345727 7.14581979563099 2.95640000499182 1.76051453364693 5.84411759419537 5.50278744698535 0.29610383925285 0.293008725643553 0.303965173913427 0.305468297788636 0.303465323679895 0.304638856282960 0.287228704306738 0.287228704306738 0.299056237877026 0.302818508542853 0.303754122009471 0.29950200419234 0.290499265315163 0.299915916280881 0.296850541033416 0.287338917473899 0.293703081030703 0.296559299156506 0.288637266453573 2 0|2 /|- 9434100 9434526 9434265.6 9433929 9434897 - gene protein_coding_gene FALSE TRUE AT2G22170.1 lipid-associated family protein similar to lipid-associated family protein [Arabidopsis thaliana] (TAIR:AT4G39730.1); similar to dehydration stress-induced protein [Brassica napus] (GB:AAK01359.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976) -1.15959498543739 -11.5305605497763 1.94128274849316e-07 0.002994040383001 10.9602789603158 7.52453560565292 -1.15959498543739 0.0982374465811921
AT1G48330_at 7.72951116832132 8.18267754481062 7.31364618903673 7.43884621024979 8.8009184407333 8.46691391330289 5.42112224504558 6.04021959205541 4.48582241556022 5.07289834913047 5.9209244583151 6.47134143833624 7.56808844448952 6.70315989065399 6.22933490878259 6.59180269829153 6.80251391583998 6.46914246826069 5.40288072204362 0.238367706679408 0.241394947559273 0.227891875390350 0.226982169693672 0.249193863769888 0.236504533847228 0.228259703322948 0.231832033600434 0.253414130261733 0.238022711635888 0.237159718249373 0.231137827734541 0.231415490528354 0.226706253536051 0.237134948944442 0.238513658508116 0.226706253536051 0.226706253536051 0.233230396634154 1 1 + 17867616 17867762 17867692.909 17867505 17868054 + gene protein_coding_gene FALSE TRUE AT1G48330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17580.1) 1.38451829153277 11.5187679667734 1.96149073123858e-07 0.00302501100571614 10.9547470111115 13.2151014246691 1.38451829153277 0.146420543675913
AT1G19640_at 2.32602103321430 2.43153025000437 2.59372473546009 2.49257549895555 1.79496055397394 1.51346180340264 6.09247727810376 6.05628924732951 2.26615400137154 3.10471326434513 2.21613752906524 2.10249554861065 3.01473982062455 3.36515699145805 1.7260471900367 4.51009201405806 3.7791155172445 1.64436088852597 2.68476958809797 0.235338827657496 0.237730062416229 0.242580942905575 0.236451916159224 0.242410696039618 0.245178486372348 0.263858626396335 0.270605270260474 0.244845115199330 0.245180650621834 0.242251847770213 0.235338827657496 0.239305941840552 0.236443054480375 0.244192976862452 0.249796072037018 0.242220267447642 0.247717932559216 0.240763995715857 1 1 - 6789169 6790391 6789686.091 6788876 6791837 - gene protein_coding_gene FALSE TRUE AT1G19640.1 JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE); jasmonate O-methyltransferase Encodes a S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase that catalyzes the formation of methyljasmonate from jasmonic acid. Its expression is induced in response to wounding or methyljasmonate treatment. Identical to Jasmonate O-methyltransferase (EC 2.1.1.141) (S-adenosyl-L- methionine:jasmonic acid carboxyl methyltransferase) (JMT) [Arabidopsis Thaliana] (GB:Q9AR07;GB:Q9FWR8); similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G11480.1); similar to jasmonic acid carboxyl methyltransferase [Capsicum annuum] (GB:ABB02661.1); similar to Jasmonate O-methyltransferase (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) (GB:Q9AR07); similar to Jasmonate O-methyltransferase (S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase) (Floral nectary-specific protein 1) (GB:Q9SBK6); contains InterPro domain SAM dependent carboxyl methyltransferase; (InterPro:IPR005299) -1.00917145068342 -11.5094850356601 1.97755868937658e-07 0.00304959325488762 10.9503852278479 5.90262028608444 -1.00917145068342 0.0552460536557897
AT2G31990_at 4.31391926404103 4.21465065442534 5.55569872702272 5.75277209283301 5.63698941432995 5.98953021972265 2.70690570409729 2.95188350266075 2.91739475470361 2.53122617152704 2.31905916242279 2.41762765628775 2.42377202908426 2.57576206852122 2.28949563445976 2.42841821960454 3.34924927053489 2.99620375767065 2.32472233088813 0.291713576505458 0.293259935727849 0.296342103222136 0.299053093529112 0.298602208719068 0.306284802783881 0.283095681387935 0.283095681387935 0.29159501910532 0.283095681387935 0.283095681387935 0.290622361734415 0.287168987757294 0.286337329659942 0.290190899681963 0.283095681387935 0.286112928336901 0.289260721707512 0.287039064622328 2 2 - 13618621 13619151 13618936.545 13618428 13620650 - gene protein_coding_gene FALSE TRUE AT2G31990.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT4G13990.1); similar to Os03g0144800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048945.1); similar to Xyloglucan galactosyltransferase KATAMARI1 homolog (GB:Q8H038); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 1.09787094397731 11.4891829933223 2.01319975481429e-07 0.00310435402192364 10.9408239604580 7.235825144323 1.09787094397731 0.0835320556711013
AT3G11840_at 6.31007568719586 7.07825540938993 7.96233533228381 8.1626194056565 7.38466581308713 6.93354562038569 3.39798889027991 3.32358366035172 4.40033545603663 3.62484323289298 3.39554573824963 4.47873096913924 3.8871095379463 4.15551601294873 3.16151215125437 4.1796628783766 4.77748248452518 4.77367442429245 3.36859553106303 0.287789811641639 0.267825525523469 0.276685534355119 0.272009878887855 0.278912697842936 0.268367126092061 0.270559288380730 0.272216282808992 0.27367111041654 0.27334206069507 0.269008998974482 0.265778040580802 0.268570944317233 0.276740899274835 0.272170357531720 0.265048476350622 0.277147519429217 0.268189059619573 0.269899356579703 3 3 - 3736599 3737077 3736865.909 3736406 3738263 - gene protein_coding_gene FALSE TRUE AT3G11840.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35930.1); similar to hypothetical protein [Nicotiana benthamiana] (GB:BAF02552.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 1.44327258282147 11.4800242492669 2.02950590923631e-07 0.00312929516145147 10.9365007708205 10.2686732346234 1.44327258282147 0.158537280912428
AT1G52200_at 9.48057036002974 9.71835393930191 9.29791363692918 9.32613180012136 9.86535825146469 9.72561686891893 4.53311937801167 4.95989574102917 7.3091360647992 6.29214987364404 6.54932467788524 5.85668939225727 6.29672318003568 7.65831942518645 4.24109161555086 6.76792781243898 6.24521294701788 5.987506916395 5.46588034281683 0.269897522313807 0.272858699696801 0.272638281918110 0.274678419563414 0.271448244614581 0.273370278301395 0.27042051994333 0.277494793034054 0.274313852659140 0.278751048469338 0.272228225304808 0.269514238352782 0.271889686720081 0.271996108801739 0.277092152110806 0.269514238352782 0.285032871858742 0.282497319079701 0.271450612626398 1 1|0 -|/ 19445960 19446972 19446626.875 19445737 19447128 - gene protein_coding_gene FALSE TRUE AT1G52200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18470.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABD32291.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 1.11269884342899 11.4659495918384 2.05484430201556e-07 0.0031681589448476 10.9298451365672 14.6414057917755 1.11269884342899 0.0880715655570667
AT4G04330_at 11.2138450098643 10.9402694812183 10.9714520832501 10.8319035662046 11.5671679309037 11.3343949247154 9.79987925522225 9.80851139902786 9.26786721396691 9.43330292736922 10.6428986662134 10.5061229386991 10.7362543119207 11.0359602702664 10.5473397654937 10.0779505338044 10.6141533556216 10.4890373522431 9.02640051111593 0.107469898302285 0.102711252479895 0.111374202088903 0.106367547588591 0.105639117782669 0.107496326381165 0.108265311672087 0.11111949732199 0.118370517183851 0.122128847082288 0.105430976011484 0.102111218921690 0.102111218921690 0.108286771894399 0.103044215959445 0.104231583359687 0.109331602546139 0.102111218921690 0.117655347478841 4 0|4 /|- 2116729 2118264 2117665.625 2116551 2118595 - gene protein_coding_gene FALSE TRUE AT4G04330.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56420.1); similar to Os08g0425200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061837.1) 1.03714721920036 11.4521341460524 2.08005018041611e-07 0.00320681336314752 10.9232979158682 20.7202970563509 1.03714721920036 0.0667046929024839
AT1G78780_at 3.00941480607914 3.03134870585894 4.58127866469991 4.51876591257388 4.00394322040145 3.92152533074003 2.06554425323197 1.95098238605987 2.02116681915716 2.74123207901654 2.56631908941704 2.10609701107625 2.12173691105262 2.36162976311488 2.64660996825294 2.38390097278792 3.36371376925802 2.68775889432538 2.37995343295483 0.217758935061194 0.208395504736218 0.226510943930865 0.223641364338984 0.223493549601816 0.215966230926626 0.222243397213267 0.206663320610495 0.231584997254138 0.211898480377948 0.215350356212580 0.209167927518879 0.213321570975091 0.208547992499769 0.206377404602757 0.206840954528946 0.219581349979077 0.208960581634017 0.207890556282454 1 1 - 29626345 29626843 29626628.909 29626237 29628049 - gene protein_coding_gene FALSE TRUE AT1G78780.1|AT1G78780.2|AT1G78780.3|AT1G78780.4 pathogenesis-related family protein similar to pathogenesis-related protein-like protein [Medicago truncatula] (GB:ABE85366.1); contains domain NTF2-like (SSF54427) 0.945496215665395 11.4375330682892 2.10705452380105e-07 0.0032482352538917 10.9163630901317 5.84060286384905 0.945496215665395 0.0269799214486146
AT3G51895_at 8.47042340537169 8.8556215460965 11.0079165301187 10.9820655562878 10.6737285528058 10.5014669938367 11.1566698850213 11.0213539604499 9.05340807785653 9.56238974849978 10.4005910360908 9.99085029775533 10.8404090333458 10.5985174015543 10.0005907981962 10.8126398135569 11.2916769460096 10.6976766952393 9.45535298119915 0.109168323067505 0.08987279633276 0.0883880360623331 0.0886542920054908 0.0885869817365721 0.0912820220305916 0.089028269430353 0.0875943448934087 0.0993850787222967 0.0921567604772874 0.086635662926724 0.086635662926724 0.0883275459245538 0.0938221179659458 0.090670839087761 0.086635662926724 0.0896385980525516 0.08756085836531 0.086635662926724 3 3|0 -|/ 19262532 19263436 19263115.75 19262265 19266738 - gene protein_coding_gene FALSE TRUE AT3G51895.1 SULTR3;1 (SULFATE TRANSPORTER 1); sulfate transporter Encodes a sulfate transporter. Identical to Sulfate transporter 3.1 (AST12) (AtST1) (SULTR3;1) [Arabidopsis Thaliana] (GB:Q9SV13;GB:O23250;GB:O64435;GB:O65025); similar to SULTR3,4 (SULTR3,4), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G15990.1); similar to AST91 (SULFATE TRANSPORTER 91), sulfate transporter [Arabidopsis thaliana] (TAIR:AT1G23090.1); similar to SULTR3,2 (SULFATE TRANSPORTER 3,2), sulfate transporter [Arabidopsis thaliana] (TAIR:AT4G02700.1); similar to Sulphate transporter [Medicago truncatula] (GB:ABE80289.1); similar to Putative sulfate transporter ATST1 [Oryza sativa (japonica cultivar-group)] (GB:AAN06871.1); similar to sulphate transporter [Brassica napus] (GB:CAE46442.1); contains InterPro domain Anti-sigma factor antagonist; (InterPro:IPR003658); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) 1.06867297128039 11.4342517436956 2.11317545449319e-07 0.00325745996310125 10.9148024487727 20.3017404397004 1.06867297128039 0.0768156738051232
AT2G28950_at 8.67712239170964 9.05290194017597 3.84223756435726 4.63249332704158 6.60103557272927 7.07195076403176 8.21528064284877 8.76394042525436 9.95368305863783 9.4194527388608 9.95431160372488 10.6497085036960 9.35607366337541 9.69261216088842 10.5102989388365 9.45393962588908 7.2604415877022 9.57536497711249 9.7566471717174 0.160878091507663 0.156937506569897 0.186590397113976 0.208085383202493 0.196401923744876 0.181421766403894 0.170253898305491 0.156937506569897 0.158123007739175 0.159302143740000 0.159527312988419 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.195689740803465 0.156937506569897 0.161784880812647 2 2|0 -|/ 12438961 12440063 12439533.7 12438418 12440672 - gene protein_coding_gene FALSE TRUE AT2G28950.1 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A6 precursor (AtEXPA6) (Alpha-expansin-6) (At-EXP6) (AtEx6) (Ath-ExpAlpha-1.8) (EXPA6) [Arabidopsis Thaliana] (GB:Q38865;GB:O81065;GB:Q8LDV8); similar to ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) [Arabidopsis thaliana] (TAIR:AT2G39700.1); similar to Expansin [Brassica napus] (GB:CAA04385.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.64685790835472 -11.4322731718054 2.11687557254119e-07 0.00326295200751499 10.9138610291363 16.7403810980478 -1.64685790835472 0.196438244429977
AT3G29810_at 2.10140590571022 2.76067013241014 3.94719512064676 3.91000538737174 4.4859994575155 4.47274958235653 2.06803751810298 2.11353070525263 5.83464487140882 4.11526168541759 6.54731084569395 3.90015877214571 5.33411366805112 5.9388253476237 4.96219904110326 3.99190311743414 4.37125873318616 5.77323637791607 3.87466433189528 0.229940577761868 0.219614719314899 0.217915634662028 0.215355498360778 0.220813349975041 0.22867995875126 0.225596535746935 0.225351396476648 0.228669567347126 0.220078632974037 0.228348386923362 0.214434709932817 0.221754260410425 0.220872577454328 0.218373627090834 0.216671159726730 0.227790718835443 0.227662571706253 0.217324085901340 3 3 + 11732008 11732587 11732291.182 11730595 11732718 + gene protein_coding_gene FALSE TRUE AT3G29810.1 phytochelatin synthetase family protein / COBRA cell expansion protein COBL2 Identical to COBRA-like protein 2 precursor (COBL2) [Arabidopsis Thaliana] (GB:Q8L8Q7;GB:Q9FWK1;GB:Q9LJ49); similar to COBL4/IRX6 (COBRA-LIKE4), hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding [Arabidopsis thaliana] (TAIR:AT5G15630.1); similar to COB (COBRA) [Arabidopsis thaliana] (TAIR:AT5G60920.1); similar to phytochelatin synthetase family protein / COBRA cell expansion protein COBL3 [Arabidopsis thaliana] (TAIR:AT3G02210.1); similar to COBRA-like 1 protein precursor (BRITTLE CULM1-like 6 protein) (GB:Q6Z4G8); similar to hypothetical protein [Cleome spinosa] (GB:ABD96927.1); similar to phytochelatin synthetase-like protein [Phaseolus vulgaris] (GB:AAR13304.1); contains InterPro domain Carbohydrate-binding; (InterPro:IPR008965); contains InterPro domain Phytochelatin synthetase-like conserved region; (InterPro:IPR006918) 1.21863088162867 11.4180686758710 2.14364661504469e-07 0.00330400252776838 10.9070939144254 8.08773224323823 1.21863088162867 0.114563963217661
AT4G28780_at 3.46598527279005 3.54290630929388 1.29014768259584 0.755239797383294 1.99549179345811 1.97429850557423 5.09758953565109 4.22180769564790 5.80365393703828 4.7747675172266 6.18403615106542 6.69635480925077 3.39346264952001 5.24842869774873 7.08340808836924 2.89683149125296 2.11059555601110 3.65686405860216 4.90854070612648 0.254994109689462 0.253668686706906 0.256427549707896 0.269553692062091 0.260152264572748 0.251608014994614 0.260864339368201 0.259749076761248 0.260956767977279 0.255227649487539 0.251551383278102 0.256268686381423 0.254508570142432 0.258018515798236 0.251551383278102 0.251551383278102 0.252175973029679 0.252307218392028 0.256127251598353 4 4 + 14216418 14217021 14216722 14215551 14217585 + gene protein_coding_gene FALSE TRUE AT4G28780.1 GDSL-motif lipase/hydrolase family protein similar to ATLTL1/LTL1 (LI-TOLERANT LIPASE 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G04290.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -1.54092539549788 -11.4126624084955 2.15393205788456e-07 0.00331964008761168 10.9045144046911 7.7034675279783 -1.54092539549788 0.178127501443517
AT3G19260_at 7.01266755785129 7.31283602323262 7.6957629314235 7.77929546375627 7.6319554215929 7.318349461961 5.12873932038891 5.17975639055844 5.18169458190426 4.68026481034198 5.18327278353373 5.78176361481045 5.44138935276211 5.51807286820628 5.61327543788846 4.97549852727935 5.69415572039878 5.7041047433007 4.56991383283225 0.231838377033127 0.235100503247743 0.238674099002994 0.240645191645342 0.235182339027978 0.240744543395889 0.237241886837206 0.240726596055061 0.235116878304049 0.235009367577875 0.234859494994882 0.231838377033127 0.235107286064561 0.231838377033127 0.245749263650400 0.235646665252089 0.244148788521434 0.232129533420613 0.234957592768662 3 3|0 -|/ 6669976 6670728 6670379.889 6669152 6671525 - gene protein_coding_gene FALSE TRUE AT3G19260.1 LAG1 HOMOLOG 2 (LONGEVITY ASSURANCE GENE1 HOMOLOG 2) LAG1 homolog 2 Identical to LAG1 longevity assurance homolog 2 (LAG1 homolog 2) (LAG2) [Arabidopsis Thaliana] (GB:Q9LJK3;GB:Q9M6A2); similar to LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT1G13580.2); similar to Os02g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047244.1); similar to ASC1-like protein (Alternaria stem canker resistance-like protein) (GB:Q8W4Y5); similar to Os03g0264000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049639.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Longevity-assurance protein (LAG1); (InterPro:IPR005547) 1.06307910966930 11.3672400817208 2.24249333723649e-07 0.00345590648201515 10.8827560183265 12.0322033410366 1.06307910966930 0.077010342509635
AT3G01290_at 11.0127176140012 11.0683267251034 11.1750993108515 11.2381872263321 10.7472256012620 10.4706653575920 6.22268087406265 6.05616573915743 9.62446441812142 6.93338534916375 8.00392791500229 7.37759892369534 6.43027315820925 8.05929195690199 6.83358702770551 6.89199284454181 6.6755661138961 8.04211940857779 6.24668646901942 0.232343467631698 0.229840508603511 0.23462435586653 0.231966005350396 0.231865807149821 0.231253570352672 0.236538427308493 0.234921784767152 0.236887205959826 0.236412578783400 0.227792864491383 0.228958466425260 0.227792864491383 0.227792864491383 0.230736549176372 0.229822637518467 0.228279028706836 0.228305401920347 0.243159166299864 3 3|0 -|/ 88294 89003 88553.111 88061 89429 - gene protein_coding_gene FALSE TRUE AT3G01290.1 band 7 family protein similar to band 7 family protein [Arabidopsis thaliana] (TAIR:AT5G62740.1); similar to hypersensitive-induced reaction protein [Capsicum annuum] (GB:AAS98165.1); similar to Os10g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064791.1); contains InterPro domain Stomatin; (InterPro:IPR001972); contains InterPro domain Band 7 protein; (InterPro:IPR001107) 1.00280211286315 11.3608729817731 2.25521996036905e-07 0.00347529395892871 10.8796937156121 17.1942869297125 1.00280211286315 0.0577300908989842
AT3G27210_at 8.3748799342126 8.67667943925625 8.18186222957481 8.7174191745153 9.03805533950075 8.57588310001405 4.74082296064156 4.78444429091799 2.25552205351940 2.98372483884757 3.15172077577843 2.76318165539801 3.88087269822973 3.32516297989243 2.55895252606453 3.29382848446831 3.77834746366646 3.35295180955212 2.7191697878261 0.322985063809606 0.322497610796446 0.325887149981470 0.318565907717761 0.329819028656218 0.327855988289761 0.323243040572812 0.312876496669383 0.317989396595422 0.312774890117382 0.306307344939163 0.306307344939163 0.310313653117752 0.31217952778161 0.311465343630443 0.306307344939163 0.313939976317905 0.309815705520123 0.313011401161272 3 3|0 -|/ 10046785 10048100 10047197.6 10046423 10048580 - gene protein_coding_gene FALSE TRUE AT3G27210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40860.1); similar to Os04g0380200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052596.1); similar to OSJNBb0089B03.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03997.1); similar to Os01g0920100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045217.1) 1.29721002185551 11.3342002358633 2.30939181976843e-07 0.00355854185508118 10.8668322150032 10.5942222381770 1.29721002185551 0.133309409560863
AT2G47240_at 5.6350692288026 6.20407437964801 4.64819271021423 4.64731871652998 6.45460634325944 6.37636712425034 3.4299991338808 3.68966354570995 5.53117214689266 4.15158528576973 6.75316502874267 7.75335143668228 5.18663720080893 5.76518262652871 7.01672494792288 6.40718960472516 4.57231633061334 5.47883360288974 3.93160430236095 0.197645686242287 0.197216280572714 0.199893334234121 0.18652447455194 0.195317456827217 0.195524267314618 0.191017433063665 0.191241691165907 0.186674265054312 0.189780044272859 0.191059535056865 0.198202279920240 0.18652447455194 0.186812687761252 0.194130609527234 0.190444652903159 0.204948467104831 0.187700867363700 0.191983707314823 2 2 + 19403830 19404651 19404189.455 19399628 19404901 + gene protein_coding_gene FALSE TRUE AT2G47240.1|AT2G47240.2 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein|long-chain-fatty-acid-CoA ligase similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00145.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE87767.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 1.18523708528813 11.3316457646794 2.31465350450075e-07 0.00356641811973476 10.8655976523065 10.4630592356396 1.18523708528813 0.109081367622099
AT3G47160_at 10.8619901879679 10.8902335443423 10.8398188115196 10.7659706196555 11.6288914603060 11.1443319879814 9.0695496673085 9.25490008864121 9.03349612782128 9.0669127101108 10.0073131148127 9.78090653187904 10.1471153647445 10.0962584119489 9.56644442675895 9.9716389041845 9.8569912090044 9.99651290877858 8.24989669658667 0.121808691110880 0.118125478866390 0.123364001317461 0.118274716231538 0.119430304384816 0.122053083059789 0.128584007795581 0.121841090679019 0.148547859978984 0.122179041067312 0.122162519082744 0.119254786249642 0.118047627331957 0.118514276648934 0.122821181912142 0.117179970120690 0.124828398071283 0.128733065894704 0.130095986860963 3 3|0 -|/ 17371229 17372007 17371562 17370976 17373103 - gene protein_coding_gene FALSE TRUE AT3G47160.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G58787.1); similar to Os04g0679800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054282.1); similar to H0801D08.18 [Oryza sativa (indica cultivar-group)] (GB:CAJ86260.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.11002363932083 11.3302818319234 2.31746824983489e-07 0.00357052333252061 10.8649382694333 19.9126271895587 1.11002363932083 0.0908172514038561
AT1G74560_at 7.6394733732648 7.47405076250732 7.13212511666284 7.32787722538585 6.69070065075581 6.88797672054953 8.49102543959449 8.55011649187743 5.30190467484322 6.81093343070513 4.50168675682874 4.93631466907314 5.30503357153988 4.80197921011591 5.88944164564325 4.5316326335669 6.69679329386338 4.97822627300736 6.40158780348165 0.222218198520603 0.213521627189907 0.21557391754735 0.220049963234434 0.215804556751996 0.213521627189907 0.214213386950614 0.218251023532255 0.229040488026655 0.222486697765938 0.216348420819813 0.226946988424581 0.223631052739496 0.227355781702682 0.214256866565535 0.217918973861568 0.229184057288768 0.217067392723780 0.227705976920279 1 1|0 -|/ 28021817 28022892 28022456.556 28021245 28023710 - gene protein_coding_gene FALSE TRUE AT1G74560.1|AT1G74560.2|AT1G74560.3 NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding|NRP1 (NAP1-RELATED PROTEIN 1); DNA binding|NRP1 (NAP1-RELATED PROTEIN 1) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. similar to NRP2 (NAP1-RELATED PROTEIN 2), DNA binding / chromatin binding / histone binding [Arabidopsis thaliana] (TAIR:AT1G18800.1); similar to Os02g0576700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047218.1); similar to nucleosome/chromatin assembly factor A [Zea mays] (GB:AAK67146.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.99766669238884 -11.3282706640655 2.32162546967039e-07 0.00357669619857420 10.8639657300179 13.2124751274322 -0.99766669238884 0.0568960807203581
AT1G16350_at 6.42590491381645 6.50151419294823 5.08541527122434 5.3782857956839 5.11114934774608 5.69670295569551 6.90068854731032 7.29612272653837 5.19832923806846 6.9654836629358 4.67812510342419 5.75151261806892 5.10903056627318 4.65366913808836 5.81099153215299 5.67021225826157 5.0735436380753 5.09332105963892 6.90664845856691 0.234985238501568 0.233806348522073 0.240646633885758 0.243224122566148 0.232482314836222 0.235740677058133 0.229926497572028 0.233747796295674 0.244759463713209 0.229445797783519 0.233465114164 0.232966386729822 0.229146638764067 0.236503661144987 0.238877507467259 0.230659797374723 0.242700738628605 0.235219084630575 0.232573278447511 1 1|0 +|/ 5592005 5592825 5592341.625 5590945 5593001 + gene protein_coding_gene FALSE TRUE AT1G16350.1 inosine-5'-monophosphate dehydrogenase, putative Identical to Probable inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD) [Arabidopsis Thaliana] (GB:Q9SA34); similar to inosine-5'-monophosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79470.1); similar to inosine monophosphate dehydrogenase [Glycine max] (GB:CAB38030.1); similar to inosine monophosphate dehydrogenase [Vigna unguiculata] (GB:AAO40253.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain IMP dehydrogenase; (InterPro:IPR005990); contains InterPro domain IMP dehydrogenase/GMP reductase; (InterPro:IPR001093) -1.29496948325417 -11.3273835170057 2.32346183336956e-07 0.00357929295430581 10.8635366358928 11.8429085650896 -1.29496948325417 0.133008144510308
AT2G04030_at 7.79199870386452 7.80066875953718 7.56962958780232 7.27571887163819 7.01747979018949 6.45218297055431 8.60616710814667 8.40083364002675 7.86437846502581 8.49619715424055 6.36451207281658 6.64662823593848 7.00981451798831 6.29223192731603 7.48916300672063 7.41485439515238 7.76348721119589 6.5955001280296 8.55279529890308 0.175352018155507 0.182528050072235 0.179485260582136 0.180997464210994 0.178738729493558 0.179439232234789 0.185302400564898 0.178343237139807 0.181407459366984 0.183751198408317 0.185272408352904 0.175609411050023 0.187743779224082 0.182440473123143 0.187991453330919 0.188309275988013 0.186166886058378 0.183976112654238 0.178380928150382 2 2|0 +|/ 1285130 1285878 1285436 1281838 1286101 + gene protein_coding_gene FALSE TRUE AT2G04030.1|AT2G04030.2 CR88 (EMBRYO DEFECTIVE 1956); ATP binding Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. similar to ATP binding [Arabidopsis thaliana] (TAIR:AT3G07770.1); similar to heat shock protein 90C [Chlamydomonas reinhardtii] (GB:AAU10511.1); similar to heat-shock protein [Secale cereale] (GB:CAA82945.1); similar to Hsp90 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22030.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -1.21429864183806 -11.3233071364338 2.33192007883336e-07 0.00359208968943491 10.8615642148623 15.2400753837789 -1.21429864183806 0.115853732913922
AT3G53310_at 5.74560056050762 6.13611851309867 5.93898061786849 6.66642006769826 7.4721415029811 7.00802604384405 4.22910211553397 4.39146403555105 3.45791707738135 3.46445187270415 4.53028611148234 4.69068443739833 4.77902256977109 5.13958681746052 4.70147577242693 5.15131838114029 5.07352207783373 4.11406404581319 3.5448506498923 0.275853094372403 0.268870121770595 0.273877476144821 0.281097903883355 0.272003453203869 0.298229456356343 0.267835901112567 0.279237929976722 0.279204174003504 0.276685819203102 0.266492378708494 0.266492378708494 0.268594143995897 0.266492378708494 0.28246725795426 0.267872034723901 0.280976378990322 0.278975823273403 0.267655572428693 3 3|0 -|/ 19777912 19778658 19778277.5 19777642 19779577 - gene protein_coding_gene FALSE TRUE AT3G53310.1 transcriptional factor B3 family protein similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT3G06160.1); similar to Os03g0621600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050679.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE81219.1); similar to Os03g0212300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049354.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 1.46462128929918 11.3226264681990 2.33333567627266e-07 0.00359403694216278 10.8612347407153 10.0792657954646 1.46462128929918 0.166297966411206
AT1G33770_at 3.35564039269338 3.38670391870553 2.60015487983058 2.49022375746888 2.5181138285431 2.67001291414815 3.53826583213265 3.56764669854498 5.39415966463485 4.72727636311741 4.45381512776407 3.87516371268210 3.64381345817702 4.24495158115267 4.29515030178945 4.05189597505533 3.20141055944549 4.17052538446468 4.85044404856227 0.217272706960878 0.209380446048952 0.213396980166570 0.209753922303533 0.209028692738576 0.21818076239315 0.208697152091437 0.209893483938240 0.21763020482097 0.208920837879214 0.209143598360625 0.206184841421308 0.206184841421308 0.212262029361358 0.206184841421308 0.206184841421308 0.211906143875785 0.214399159351381 0.212706477677618 1 1 + 12243722 12244375 12244058.091 12242106 12244442 + gene protein_coding_gene FALSE TRUE AT1G33770.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10010.1); similar to transposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96101.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.945486897529975 -11.3223581021001 2.33389405807545e-07 0.00359466362824781 10.8611048298052 7.507204005094 -0.945486897529975 0.0332815937405643
AT1G06890_at 6.32776422238741 7.03873195550025 6.8698497482179 6.46310027886164 7.7686731384861 7.41744928928405 5.75409122703161 5.34966064887677 4.63729147186949 5.03506479741704 6.49008691641546 6.9188007025643 6.81030060361886 6.70522245676781 6.79066591913253 6.37479958692222 6.81070466403696 6.2998795640866 4.43620996034689 0.247602003750881 0.226400275066350 0.232733447732779 0.237775977678350 0.244031179905011 0.231285254644929 0.241756896746715 0.227016543012959 0.241260290595684 0.241658809253634 0.23358144234224 0.230248700597700 0.226442406898227 0.239830659681738 0.232913420244943 0.231099199500562 0.247719760027487 0.229370857042799 0.228929392101116 1 1 - 2111750 2112535 2112228.818 2111562 2114600 - gene protein_coding_gene FALSE TRUE AT1G06890.1|AT1G06890.2 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G28315.1); similar to Os05g0168700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054756.1); similar to Os01g0167500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042121.1); similar to putative glucose-6-phosphate/phosphate-tranlocat or [Oryza sativa] (GB:BAB41206.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 1.47970412103935 11.3119089910423 2.35574833404264e-07 0.00362808800925908 10.8560423878003 12.3001215443662 1.47970412103935 0.169367613085827
AT1G78570_at 9.20158903438035 9.38862873380222 8.85502900939578 8.64456922065605 7.71604417923354 7.58759609822802 9.93002989101427 10.0655416053341 8.79201274262734 9.15429192454645 8.02916824485632 8.87313335193836 8.52311964485811 8.0975851491882 7.82003821540363 8.03742450053737 8.15556213037353 8.96390797773583 8.643500170512 0.167139053297423 0.170848517243882 0.182365252074074 0.188134869467899 0.184720068821244 0.178614247606601 0.172600358874729 0.171965877780958 0.179031408500994 0.167498035554306 0.174601912904493 0.172067793625196 0.173124704132129 0.180186836857259 0.178588262538217 0.170309811520218 0.173551952783246 0.170382609781656 0.170014832029918 1 1|0 +|/ 29556416 29557038 29556711.1 29554542 29557331 + gene protein_coding_gene FALSE TRUE AT1G78570.1 RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli. Identical to Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC 1.1.1.-) (RHM1) [Arabidopsis Thaliana] (GB:Q9SYM5); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM3 (RHAMNOSE BIOSYNTHESIS 3), catalytic [Arabidopsis thaliana] (TAIR:AT3G14790.1); similar to UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase (ISS) [Ostreococcus tauri] (GB:CAL58329.1); similar to rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95280.1); similar to Os03g0278200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049724.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-glucose 4,6-dehydratase; (InterPro:IPR005888) -0.998206783310791 -11.2860764243386 2.41073576610538e-07 0.00371253307980228 10.8434914346565 17.5115088120506 -0.998206783310791 0.0584657200084131
AT1G07420_at 7.85910322803547 8.29120983486094 7.97796753283762 8.18960012179374 8.8748357661842 8.63006222377128 7.0839397933131 7.29257476095938 7.36802380483604 5.91137416900435 8.24481500639602 7.42012821663617 8.1234321312904 8.3247240588735 7.53785487415472 7.62650855213967 7.1158572470217 7.71493948543211 5.52790156262784 0.199459370394947 0.1916537456232 0.211184749918345 0.189090337019618 0.193507992762186 0.200383758167581 0.202002923421833 0.189730932237655 0.195771160212650 0.202720355371943 0.192172903366790 0.193742820979396 0.198310136453580 0.199317453195572 0.191978345387391 0.192142378223924 0.202567310646109 0.193893868035403 0.196951656624168 1 1 + 2279003 2279820 2279389.091 2277804 2280294 + gene protein_coding_gene FALSE TRUE AT1G07420.1|AT1G07420.2 SMO2-2 (sterol 4-alpha-methyl-oxidase 2); C-4 methylsterol oxidase Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA similar to SMO2-1 (sterol 4-alpha-methyl-oxidase 1), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT2G29390.2); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 1.14042105392906 11.2623157278794 2.46254383409653e-07 0.00379207125012525 10.8319023834474 15.0412278037107 1.14042105392906 0.100154720871677
AT3G29575_at 7.51500032239198 7.78693862895674 8.421500307993 8.10119141781726 8.1751009814491 7.40389946383964 7.51451112480486 7.72905707088881 4.15775378842797 4.68898732414033 6.12167074554997 6.38870787958629 7.20452754369342 7.0462987231712 6.23156737583407 6.98227984125406 7.73969097541226 7.41130124189898 4.57409976062074 0.238700704136789 0.225304182425357 0.252929685390823 0.257886576919500 0.227562945687085 0.247270944359946 0.237670052484976 0.230802516666712 0.259638204747186 0.244439536542271 0.225304182425357 0.230161204815120 0.226385889144484 0.24481949997739 0.230878093960548 0.225527856966786 0.229614049733691 0.229323354461976 0.253462060264979 3 3|0 -|/ 11384904 11385998 11385280 11384693 11386483 - gene protein_coding_gene FALSE TRUE AT3G29575.1|AT3G29575.3|AT3G29575.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13740.1); similar to Os07g0602900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060209.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94628.1); similar to Os03g0419100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050378.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 1.40309408620892 11.2466622993816 2.4973339724474e-07 0.00384539485077450 10.8242440616266 13.5130844973659 1.40309408620892 0.15645232460423
AT3G22910_at 2.36475855104262 2.52691105780476 7.08915127456881 7.10605882922493 1.94965509351844 1.53524785848036 1.80876329764674 1.89997889813158 1.8595109890494 2.03303120239753 1.75315647779184 1.76656912195451 1.56361529718136 1.6360388915759 1.2705383016262 1.67554690269202 2.51725688607985 1.77010262929013 1.80477270072695 0.240156114043467 0.238030388659702 0.252129324586054 0.252471068233466 0.239317201474232 0.242262362294542 0.233676370824959 0.242094559253895 0.240074030014206 0.234083582893652 0.233815742535972 0.238511136149308 0.236840122027386 0.240382235307215 0.243311462319241 0.237981280961374 0.233676370824959 0.239942693841684 0.235308616166158 3 3 - 8116361 8116917 8116692.455 8116342 8119395 - gene protein_coding_gene FALSE TRUE AT3G22910.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) Identical to Putative calcium-transporting ATPase 13, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13) (ACA13) [Arabidopsis Thaliana] (GB:Q9LIK7); similar to ACA10 (autoinhibited Ca2+ -ATPase 10), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G29900.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) [Arabidopsis thaliana] (TAIR:AT3G63380.1); similar to ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G57110.2); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17950.1); similar to Putative calcium-transporting ATPase [Oryza sativa] (GB:AAM08790.1); similar to putative calcium-transporting ATPase 8, plasma membrane-type [Oryza sativa (japonica cultivar-group)] (GB:BAD09972.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 1.05746170612886 11.2464476390687 2.49781475059588e-07 0.00384588537149247 10.8241389105665 5.10666962134325 1.05746170612886 0.0786652792524788
AT2G41480_at 2.53724176957381 2.35515361204738 4.46331441001446 4.3283311067492 3.94098622700822 4.36394613062158 3.70674431901978 3.35447892424472 3.51484475438271 3.03814037194267 4.26616695971423 3.00156530102184 4.40770181279469 3.81208723991757 3.59367793149510 4.95578411208074 5.4648924456634 4.84448750961947 3.30504730465204 0.253117375534298 0.244388789708483 0.241724915922125 0.25378762730011 0.242815181137383 0.247136557092017 0.246711285113943 0.240561816424751 0.25040336126047 0.248811078736718 0.252186026164771 0.261548276718780 0.244342966027332 0.243457441478634 0.242774759607837 0.248700250869379 0.260444172325047 0.250342454374942 0.244969641039601 2 2 - 17304208 17305141 17304532.182 17303890 17305809 - gene protein_coding_gene FALSE TRUE AT2G41480.1 peroxidase Identical to Peroxidase 25 precursor (EC 1.11.1.7) (Atperox P25) (PER25) [Arabidopsis Thaliana] (GB:O80822;GB:Q8L728); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G64120.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:BAD68110.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 1.14651220804476 11.2062681629767 2.58959852687009e-07 0.0039869458919692 10.8043948400209 7.42092767459199 1.14651220804476 0.103016605197986
AT3G11230_at 7.26062010614063 7.2176682723319 7.6455492196616 7.34682416592709 7.54048816903781 6.61963459458653 3.63279933309376 3.65105790094937 4.9357493879597 4.11798077797763 5.61208386540373 5.17696496191185 4.92645877513763 5.96756474629682 5.6043883811982 5.46748400569956 5.02032731581334 5.44800119139489 3.956010386096 0.247266958088464 0.2442369289343 0.246179657010104 0.245997135630533 0.256867720825127 0.241458408644242 0.245129855484934 0.245245082216161 0.246432817629237 0.251070297337245 0.241458408644242 0.241458408644242 0.248125065639726 0.243395248442555 0.241458408644242 0.242986787987447 0.253800002924554 0.245564158352565 0.241458408644242 3 3|0 +|/ 3516831 3518164 3517595.25 3516583 3518391 + gene protein_coding_gene FALSE TRUE AT3G11230.1|AT3G11230.2 yippee family protein Identical to Protein yippee-like At3g11230 [Arabidopsis Thaliana] (GB:Q9C777;GB:Q8L918); similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT2G40110.1); similar to Protein yippee-like (GB:P59234); contains InterPro domain Yippee-like protein; (InterPro:IPR004910) 1.45695830276012 11.2047486213810 2.59314072347422e-07 0.00399214014378857 10.8036457071726 11.2340748899001 1.45695830276012 0.167727933256716
AT2G25840_at 6.39517151666467 6.22263091680984 5.34044193643078 5.27231376051137 5.56816503463616 5.33267585634617 7.0255769931099 6.79661696055315 6.78008510564783 6.82983531172662 5.81888330117218 6.65622820246188 5.68349535746601 5.91648958740935 6.99796599744402 6.0709484947968 5.45404565758359 5.90562504413671 6.94518494871837 0.210436818452846 0.225577906188800 0.210436818452846 0.212398192025485 0.211729199843029 0.221926595414375 0.211341159488845 0.224144037473302 0.233339611421526 0.212850371488709 0.219227579302117 0.218616942824104 0.212863354503610 0.217374231253718 0.225389756701254 0.210436818452846 0.226872682686415 0.2178650628105 0.210436818452846 2 2|0 +|/ 11030886 11032167 11031531 11028955 11032448 + gene protein_coding_gene FALSE TRUE AT2G25840.1|AT2G25840.2|AT2G25840.3 OVA4 (OVULE ABORTION 4); ATP binding / aminoacyl-tRNA ligase similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305)|similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -1.01017076659603 -11.2016157362482 2.60046037687376e-07 0.00400314870415946 10.8021006356045 12.4515301188860 -1.01017076659603 0.0652784480680254
AT4G02790_at 7.87289871409235 8.0796060454308 6.89820100576038 6.6330963065436 7.10438117863222 7.30328181654481 8.43901059155822 8.18935307881018 8.20105637901508 8.15725778122234 6.54028435034714 7.43721251923892 6.78994801393296 6.80756993845925 8.02368967216629 7.80993039568817 7.34362767948789 6.30848234194474 7.90830376996738 0.155085702844877 0.155284960790435 0.166783975401788 0.1565464665336 0.161765581044978 0.157670183659104 0.158306153276742 0.159510477674623 0.160700490813936 0.163586667085912 0.166151222415402 0.15258346476508 0.168153390688251 0.157550442021035 0.154029912352881 0.153269899815004 0.155635155942930 0.160463298158079 0.158405583674667 4 0|4 /|+ 1248620 1249325 1248950.3 1247386 1249588 + gene protein_coding_gene FALSE TRUE AT4G02790.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G41670.1); similar to Os05g0430400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055624.1); similar to COG1161: Predicted GTPases [Nostoc punctiforme PCC 73102] (GB:ZP_00109854.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) -1.05837828004803 -11.1987093604790 2.60727085720471e-07 0.00401337203049521 10.8006665969945 15.1757114708265 -1.05837828004803 0.0802232519319905
AT4G23940_at 5.40257698030954 5.23557259602673 3.96583966129467 3.64520011696028 4.24277849289189 4.25108429234571 6.71169331140585 6.23908812382674 4.96871672065315 5.76060954562921 4.30579926991075 5.77760682370127 4.42911987468863 4.64362002001259 5.69333780541285 5.83210314256352 5.03929166328289 5.0735869145041 5.82789219438455 0.227310956732259 0.215018533955311 0.228822977352463 0.224354538259268 0.216549822551456 0.225663608493182 0.216951283609882 0.219237281658686 0.220167544219600 0.227259410580393 0.217092633913974 0.215018533955311 0.215018533955311 0.227102212824133 0.220345734642401 0.215420305807498 0.215721511606301 0.215466965336997 0.219827968214109 4 4 + 12441192 12441821 12441546.818 12437118 12441978 + gene protein_coding_gene FALSE TRUE AT4G23940.1 FtsH protease, putative similar to VAR2 (VARIEGATED 2), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G30950.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL55821.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -1.14538587149090 -11.1966590598323 2.61208694263471e-07 0.00402052422210334 10.7996545635834 10.2709197016236 -1.14538587149090 0.102982041833137
AT2G16790_at 3.66613839088123 4.19381649102878 5.52808922984013 5.60774652321937 6.3580329298973 5.77293972000323 3.93416011218610 4.07581493179028 4.23719974286106 4.44763731367292 5.87714350269238 4.01098606893218 5.78717285496658 6.00113843477624 3.95458498875847 4.83797403522059 5.77972183552212 5.34095287232372 4.62587256703635 0.214992293871881 0.204428136432661 0.208436429254642 0.217133121129689 0.212072084163095 0.218106798892894 0.204428136432661 0.212747059004683 0.21109120038665 0.206313524707432 0.205670338101827 0.204428136432661 0.212753680306006 0.221681165476323 0.21126202294585 0.208816227816231 0.216031865569024 0.210959628987587 0.204428136432661 2 2 - 7291222 7291703 7291430.182 7291039 7292319 - gene protein_coding_gene FALSE TRUE AT2G16790.1 shikimate kinase family protein similar to thermoresistant gluconokinase [Burkholderia thailandensis E264] (GB:YP_441767.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623); contains InterPro domain Carbohydrate kinase, thermoresistant glucokinase; (InterPro:IPR006001); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) 1.30551286778033 11.1573799324965 2.70624031915957e-07 0.0041651744752185 10.7802035171086 9.7098985571087 1.30551286778033 0.139219181961247
AT1G75750_at 10.5792908915587 10.6768261972660 11.5698557646734 11.7374472091378 12.0454924276228 11.8113976365768 10.4711577315026 10.5910513126647 11.0647226374139 10.8987142806144 12.4172651310761 11.5955183862143 11.6299178543213 11.3060764025909 10.9774009327433 11.2916585488979 11.2497667106859 11.9106886361606 10.4259310458254 0.0647423309446503 0.0631944669871895 0.0652504149397434 0.0665301919363256 0.0637924378827738 0.0660951115593822 0.0646129786111288 0.0646312183414195 0.0684949813263852 0.0634671137383903 0.064915310573225 0.062573654476363 0.0632892199031808 0.0655726332559472 0.0644264913790856 0.0627287415956892 0.0676967294749436 0.0672754670965766 0.0647992613516312 1 1|0 -|/ 28445512 28445912 28445619.125 28445202 28446028 - gene protein_coding_gene FALSE TRUE AT1G75750.1 GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data Identical to Gibberellin-regulated protein 1 precursor (GASA1) [Arabidopsis Thaliana] (GB:P46689;GB:Q8W114;GB:Q9LR14); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18420.1); similar to GAST1 protein homolog (GB:AAB06310.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.981148656819876 11.1511498987319 2.72150922035319e-07 0.00418840269012356 10.7771074061448 22.3571861780191 0.981148656819876 0.0565480761151481
AT3G10985_at 7.43807574632038 7.13109727776447 8.04003311574994 8.11126151532581 8.47680815801281 7.97215718718634 7.96707710787569 8.02172959459748 6.5551834420305 5.81002279736562 8.19694945554839 7.8420361252046 8.29428127263446 8.31132080336027 7.43490325369944 8.51634054368503 7.96718848094283 6.3932546658816 5.92809882566921 0.181147161875045 0.176211009540655 0.188584404839655 0.191325673490721 0.188322341532480 0.183665223181753 0.183102181671655 0.183456826085427 0.207707513744859 0.199186192119194 0.184346690227348 0.180708436132244 0.176211009540655 0.198398287771278 0.178090418780535 0.180056611687123 0.217284596840335 0.187769359706062 0.191353829520504 3 3 + 3442682 3443055 3442877.4 3442534 3443451 + gene protein_coding_gene FALSE TRUE AT3G10985.1 wound-responsive protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01740.1); similar to wound-induced protein WI12 [Mesembryanthemum crystallinum] (GB:AAD23999.1); contains InterPro domain Wound-induced WI12; (InterPro:IPR009798) 1.14116801626352 11.1387771119762 2.75211089413555e-07 0.00423522345498519 10.7709496030722 14.8784313029248 1.14116801626352 0.103394732596563
AT4G25420_at 2.92891102837801 3.19162903126610 1.60944021727845 1.94832058380517 2.72464487734170 2.6269690296435 4.12873438969762 4.28384130813583 2.74736191115946 3.8280081432831 2.47727571763888 3.79009458444074 3.14663211201986 2.55517468416426 3.17570751466929 3.54155063422982 2.46008896152291 2.81205432717094 4.51676462311614 0.223090529022897 0.228912927320801 0.223960197057811 0.232205737090082 0.227955509428962 0.220979388211161 0.233007134039272 0.222989952054078 0.237654286780225 0.229696836822480 0.226819831101715 0.223873736279806 0.223865710535453 0.2278079823059 0.230214358582438 0.221695811032105 0.226197848920222 0.223603018288393 0.233923949021966 4 4|0 -|/ 12990994 12991524 12991286.3 12990894 12992468 - gene protein_coding_gene FALSE TRUE AT4G25420.1 GA5 (GA REQUIRING 5); gibberellin 20-oxidase/ gibberellin 3-beta-dioxygenase Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light. Identical to Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20 oxidase 1) (GA 20-oxidase 1) (AtGA20ox) (20ox1) [Arabidopsis Thaliana] (GB:Q39110;GB:Q38844;GB:Q9FYN4;GB:Q9FYN5;GB:Q9STJ5); similar to ATGA20OX2/GA20OX2 (Gibberellin 20 oxidase 2), gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT5G51810.1); similar to (GB:2116434A); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -1.05424558561150 -11.1374196818864 2.75549088444175e-07 0.00424014937297896 10.7702732985656 6.27641157961079 -1.05424558561150 0.0806997854244828
AT3G07350_at 5.97597518753023 6.72208237086955 3.15300078901244 3.49056707378717 5.12052107178018 4.99365094279343 5.51452551129929 6.0513022446995 5.01915837106328 5.72112571458135 4.46887889250847 4.53870486106238 4.26859571035637 4.30708848706403 4.13457195502843 3.01285932337546 3.92224995408941 4.26583588252697 4.74967175704293 0.267659873918687 0.275791389523473 0.277993712052093 0.274461546042313 0.256475868765940 0.263024372988753 0.2747724999085 0.265572601607098 0.267604445439305 0.2635677744219 0.258996837410152 0.256475868765940 0.259122104305627 0.256475868765940 0.262870480763497 0.272364306989097 0.257993914333929 0.259248637186455 0.257381455776225 3 3 + 2348035 2348535 2348300.182 2347474 2348797 + gene protein_coding_gene FALSE TRUE AT3G07350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25240.1); similar to Os01g0915000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045184.1); similar to uncharacterized plant-specific domain TIGR01615 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93251.2); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -1.46250342011704 -11.1197337185461 2.79994268700248e-07 0.00430827181249071 10.7614485772588 9.76678652271178 -1.46250342011704 0.170864838252124
AT1G09080_at 7.03482496534609 7.03782723143849 8.50601185042308 8.33068726329672 5.73625693461358 5.24301710225008 2.64203613952369 2.72120662072062 2.52258959595898 2.07794935453953 2.28141652537204 2.43378160292503 2.93977963415387 2.53296386529406 2.53387792732007 2.91149474573654 2.29694740991944 2.66742358256895 2.86166221694496 0.276623051732162 0.284737535722684 0.283156942716474 0.285497272234183 0.282448557943281 0.280105468731799 0.262917700704131 0.267982041144551 0.262587612754567 0.264178194157899 0.267350839023080 0.276682400108023 0.267041474783084 0.269107499647501 0.264979436826211 0.263538359015834 0.268619601614604 0.266347887357501 0.273749493827444 1 1|0 -|/ 2929340 2929921 2929697.6 2929220 2931843 - gene protein_coding_gene FALSE TRUE AT1G09080.1 luminal binding protein 3 (BiP-3) (BP3) similar to BIP (LUMINAL BINDING PROTEIN), ATP binding [Arabidopsis thaliana] (TAIR:AT5G42020.1); similar to luminal binding protein 1 (BiP-1) (BP1) [Arabidopsis thaliana] (TAIR:AT5G28540.1); similar to HSP70B (heat shock protein 70B), ATP binding [Arabidopsis thaliana] (TAIR:AT1G16030.1); similar to luminal binding protein [Pseudotsuga menziesii] (GB:CAA89834.2); similar to Luminal-binding protein 4 precursor (BiP 4) (78 kDa glucose-regulated protein homolog 4) (GRP 78-4) (GB:Q03684); similar to Luminal-binding protein 5 precursor (BiP 5) (78 kDa glucose-regulated protein homolog 5) (GRP 78-5) (GB:Q03685); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 1.09116491045103 11.1066351950504 2.83336562115455e-07 0.00435941634470838 10.7548970694797 8.43753903885608 1.09116491045103 0.0916211636648532
AT4G15610_at 6.95560544766425 7.57224668020322 7.91838923660028 8.21386275539502 8.16920491308298 8.19112116614878 1.54007556401055 2.29301763923288 2.21880772954777 3.05370314301153 1.77375706575738 1.60944665870060 2.39944455140188 1.68846991256636 1.93009743913365 1.75491214036330 2.68760573909376 1.74275674325622 2.2540158139921 0.238144820147996 0.235884986368309 0.236336889710665 0.233257906039211 0.249600807234599 0.244002516254177 0.234927134051188 0.233557056441454 0.231612145581015 0.225393632157393 0.236403307207774 0.222724312367747 0.232889468887293 0.238281181771156 0.234963434343915 0.237029548431997 0.230722477127419 0.229754208247243 0.225282617211601 4 4|0 +|/ 8909214 8910552 8909915.4 8909062 8910906 + gene protein_coding_gene FALSE TRUE AT4G15610.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT3G06390.1); similar to unknown [Panax (GB:ABD73297.1); similar to Os07g0442900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059526.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) 1.48618861873136 11.0897182149120 2.87717376201178e-07 0.00442653183285513 10.7464157632730 8.58526718035955 1.48618861873136 0.176053086356386
AT1G31280_at 3.52782295713838 3.28978437765802 4.31999671353476 4.33884641583376 3.94018382399873 4.01824507074753 2.88431550399252 2.82116526194680 3.33266541003156 2.94995064262178 3.81136298944323 3.2769819620065 3.82052305693844 3.92643440190518 3.58270135931387 4.16481599908882 4.34907784474748 4.17648241127245 2.78994725177452 0.236091293132365 0.225013246200710 0.231054426878362 0.225212191177783 0.230933262108213 0.232189057479633 0.22918784666725 0.233887201841776 0.245063314157092 0.230113969229764 0.226368443603051 0.230480352203113 0.228972585470680 0.228160760381368 0.230426196788302 0.224848439857684 0.226316040715422 0.224848439857684 0.232874789896152 1 1 + 11184633 11185009 11184833.545 11181692 11185325 + gene protein_coding_gene FALSE TRUE AT1G31280.1 AGO2 (ARGONAUTE 2) An Argonaute gene similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G31290.1); similar to Os04g0615700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053871.1); similar to H0525G02.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86307.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) 0.943952857895818 11.0445033853118 2.99790869370526e-07 0.00461198273439617 10.7236366850627 7.09891265122237 0.943952857895818 0.0448272337758598
AT3G26830_at 5.87840599374972 6.56815808622646 9.57290321264182 9.76208770150436 5.98182482447795 4.79949512981236 1.10756576902150 1.35146639705116 1.55693448287282 1.74006957847099 1.78801378036892 1.12251023768987 1.41823368807886 1.85120843811452 1.41294798964568 1.19109352363076 1.71752698218569 1.72039712445239 1.58498020614945 0.326883464613802 0.311263973116115 0.295050125577576 0.296210496936706 0.320542908120799 0.30212236252804 0.285703103733492 0.276508735231821 0.279823335598696 0.285385521497086 0.281166160253310 0.296441751469813 0.278574369007321 0.276508735231821 0.281263179870023 0.277158402706314 0.276508735231821 0.281517492196328 0.289085659773028 3 3 + 9890230 9890759 9890452.545 9889190 9890942 + gene protein_coding_gene FALSE TRUE AT3G26830.1 PAD3 (PHYTOALEXIN DEFICIENT 3); oxygen binding Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin. Identical to Cytochrome P450 71B15 (EC 1.14.-.-) (CYP71B15) [Arabidopsis Thaliana] (GB:Q9LW27;GB:Q541X4); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.85154601847666 11.0175175408007 3.07257804880532e-07 0.00472654681247723 10.7099641322372 7.2052731691533 1.85154601847666 0.242828423685017
AFFX-Athal-Actin_M_at 10.4984017418818 10.4425578239015 11.1950814884521 11.2474312715539 10.9918150298555 11.148418180833 10.2923488458855 10.7577200729905 10.1772409141574 10.2717744952119 11.7585582641441 11.6178011240188 11.7413862183678 11.6942593885756 11.8146493289956 11.5757958406952 11.4809033732261 11.5392058835857 10.0875928796159 0.0540638900497251 0.0529039049182476 0.0555748524314826 0.0541939461508316 0.0529039049182476 0.0560068590609043 0.0529039049182476 0.0549748962158983 0.0580680506888359 0.0535384796733225 0.0536842684232453 0.0529039049182476 0.0537126207335619 0.0544413035006432 0.0538554818095365 0.0529039049182476 0.0538358842411888 0.0548779006571381 0.0540234282244721 NA NA NA NA NA FALSE FALSE 1.06093993477410 11.0104113899073 3.09257444164388e-07 0.00475699800613662 10.7063541131517 21.7375664856006 1.06093993477410 0.0859985865029572
AT3G04000_at 5.66568680821017 5.97263617648037 6.76940362899724 7.06776702646476 6.84942437765128 7.1409669844825 3.61097085993139 3.86754644034362 3.80712212659898 3.98798626114468 3.68790986445943 3.49857778738424 3.56278598220522 3.85611474582868 3.73687967492596 4.6087438848673 3.91893160103185 3.88070257825598 3.58897746021599 0.279169667978799 0.277363340112978 0.27812354440122 0.284987440249322 0.278604359870808 0.287875752976254 0.272304573153119 0.274026024464023 0.269981317155567 0.269725886077478 0.264215710336919 0.276099171927058 0.265492015677323 0.263254133225066 0.265478108007112 0.267254080871603 0.283237894109690 0.263254133225066 0.263254133225066 3 3 + 1036043 1036408 1036231.909 1035507 1036679 + gene protein_coding_gene FALSE TRUE AT3G04000.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 1.11340795768709 11.0007461582384 3.11999881310485e-07 0.00479887017443657 10.7014375787416 9.68731331158169 1.11340795768709 0.100023013555711
AT1G17050_at 7.22229887688393 7.77218599281886 7.16849711024451 7.38255062506096 6.7593559978174 6.68312944823211 9.58876468554214 9.87651072187641 8.60592245724873 9.29630804694916 8.07517143014713 8.45028097502144 8.3845274648754 8.29520893851327 7.65509672984145 9.26590713495453 8.08700256650767 8.20148543722306 9.18656457999366 0.22450405086992 0.210379504845380 0.221643526123624 0.220749198154477 0.224135319738464 0.225135515968502 0.210379504845380 0.219488368622302 0.238976428556057 0.218621629206564 0.219662082938308 0.215953396488321 0.217674764986191 0.222882244631095 0.217411674014066 0.218560489721360 0.236219365518072 0.211544616439978 0.214084536009235 1 1 + 5830821 5831152 5830963.909 5829092 5831326 + gene protein_coding_gene FALSE TRUE AT1G17050.1 SPS2 (Solanesyl diphosphate synthase 2); dimethylallyltranstransferase similar to solanesyl diphosphate synthase (SPS) [Arabidopsis thaliana] (TAIR:AT1G78510.1); similar to solanesyl diphosphate synthase [Hevea brasiliensis] (GB:ABD92707.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -1.17216002535164 -10.9903838660803 3.14969427277495e-07 0.00484422979152787 10.6961581671962 16.4723784053259 -1.17216002535164 0.114373687165612
AT3G22600_at 8.4891521728867 8.82748786825812 10.6451664484817 10.6514046014150 7.65340748266514 7.31222427343819 1.924013303308 1.48541981030927 2.64199103291148 5.98982389676507 1.85457112468632 1.79458067047651 2.02051529754491 1.49574453573621 1.82682062912827 1.59070077585201 2.49888616445967 2.27646439030871 1.82000274322507 0.309512212007469 0.304664080800739 0.306006352469299 0.3070900447308 0.305875504343628 0.301925386201298 0.294910464125639 0.304102146644124 0.308607912739799 0.306466811566037 0.298595087061284 0.296378538020541 0.296240376097445 0.298660903562935 0.300573401839921 0.303940527920766 0.305043015663298 0.295751746378674 0.306771171891184 3 3|0 -|/ 8006719 8007275 8007094.4 8006515 8007478 - gene protein_coding_gene FALSE TRUE AT3G22600.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G14815.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE87133.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 1.15993931851651 10.9476776663646 3.27535319196057e-07 0.00503716567391616 10.6743091612258 9.82539683150757 1.15993931851651 0.112589341888541
AT1G35190_at 7.30984124183596 7.4852438677929 6.09344979118358 6.21384696113135 7.34936175167866 7.2529629870495 6.96960240334258 6.75987061586387 5.78369648967292 6.59497942878951 4.20455678998424 4.32494113898001 5.43413500660741 5.47195918354519 3.95295249555844 4.42262948684305 5.20922506234053 5.15726925913672 6.47204722416747 0.230322904550319 0.231916076360252 0.234368164224285 0.237752594363659 0.231255878622291 0.243370922419850 0.230322904550319 0.233455944621875 0.232717773899036 0.231163520340721 0.234393580533504 0.231751010795746 0.239770073462892 0.242420024870315 0.240205493507011 0.232841536233902 0.244046143563416 0.230322904550319 0.230558886399985 1 1|0 +|/ 12891420 12892578 12892153.889 12890401 12892852 + gene protein_coding_gene FALSE TRUE AT1G35190.1|AT1G35190.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G46480.1); similar to Os01g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042255.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81241.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.95754999372512 -10.9472162420758 3.27674022422236e-07 0.00503897111680914 10.6740722893203 12.4571639193603 -0.95754999372512 0.0543242003744536
AT4G01950_at 3.91432189703711 3.73135530216507 3.03136449213510 2.80660953603408 2.41339552723062 2.35418002968088 5.79464962070548 5.47410309220648 3.30764302707378 3.50901431082045 4.87077393816555 4.47339498323079 3.09856799041507 4.37360010309991 3.5105221880555 2.74370615705017 2.49522646312686 3.37293813763674 3.91580738528701 0.258848593183472 0.260332141816140 0.271180003293756 0.264754972428039 0.259508668400427 0.267873360592351 0.264432685036108 0.270171595372919 0.259840400393695 0.25972392552383 0.260277248202187 0.256240174034982 0.264255597266444 0.256240174034982 0.256240174034982 0.260464570952313 0.264438509437449 0.262412097665257 0.256240174034982 4 4 - 844732 845134 844935.182 844409 846787 - gene protein_coding_gene FALSE TRUE AT4G01950.1 ATGPAT3/GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3); acyltransferase Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. Identical to Probable glycerol-3-phosphate acyltransferase 3 (EC 2.3.1.15) (AtGPAT3) (GPAT3) [Arabidopsis Thaliana] (GB:Q9SYJ2); similar to ATGPAT2/GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT1G02390.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE87665.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024) -1.01868353886060 -10.9462736718153 3.27957555152815e-07 0.00504300332558484 10.6735883679903 7.28741218022835 -1.01868353886060 0.075482016138355
AT2G40130_at 5.66321447829804 6.15958741581245 6.45558049075004 6.43588879420252 8.33053675969461 7.32177505892993 6.20347741920491 5.97764451872733 2.12667872464831 2.17701233724236 3.59953960357284 4.38387458909829 5.44837520116627 4.78604713115746 2.5866581932916 4.27622162897304 4.77681147564137 4.43246693704265 2.43671130967506 0.332102371257542 0.341976237744437 0.341350929159916 0.343347490061122 0.333889656544639 0.33759764892615 0.331867628472579 0.336246733620957 0.371030543656330 0.352065762247218 0.334020719947265 0.331211144143714 0.336330703186002 0.331211144143714 0.362613402619606 0.331988315373260 0.34240784610293 0.33154991159848 0.339011772033138 2 2 + 16774024 16774875 16774377.182 16772998 16776346 + gene protein_coding_gene FALSE TRUE AT2G40130.1|AT2G40130.2 heat shock protein-related similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT2G29970.1); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91056.1); similar to Os12g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065925.1); contains domain ATP-DEPENDENT CLP PROTEASE (PTHR11638); contains domain ATP-DEPENDENT CLP PROTEASE-RELATED (PTHR11638:SF1); contains domain Double Clp-N motif (SSF81923)|similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os12g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065925.1); similar to 101 kDa heat shock protein; HSP101-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05509.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093) 1.58720643617731 10.9404729791687 3.29708317148287e-07 0.00506959508447206 10.6706086777731 9.8349881847099 1.58720643617731 0.198476010204095
AT1G77510_at 10.1295907198854 10.1822116619609 10.8379915997629 10.5685577634635 9.86023985412348 9.2603801769704 7.27657013832912 7.43448854204218 6.43870598439064 6.01825583408387 6.83626320329543 7.23938374604086 7.24108042443742 7.19055440138416 7.19235414500498 7.1385054402316 7.1518459376175 6.64497125032848 5.83402716828179 0.235705280510855 0.235878503510739 0.237474193025868 0.236107521193214 0.239272672041747 0.234741705944712 0.240229692184691 0.233986941549042 0.240704547406332 0.235089813469416 0.232583640066410 0.238059433186458 0.238406686703954 0.232583640066410 0.243008196932752 0.232583640066410 0.237012894149788 0.243010438502719 0.240812196431138 1 1 + 29133506 29134301 29133921.455 29131544 29134506 + gene protein_coding_gene FALSE TRUE AT1G77510.1 ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Identical to Probable protein disulfide-isomerase 2 precursor (EC 5.3.4.1) (PDI 2) [Arabidopsis Thaliana] (GB:Q9SRG3); similar to ATPDIL1-1 (PDI-LIKE 1-1), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G21750.1); similar to Protein disulfide-isomerase precursor (PDI) (GB:P29828); similar to putative endomembrane protein; putative (GB:AAA32662.1); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792) 1.17922528632474 10.9338738910921 3.31712382256126e-07 0.00510007787718793 10.6672155629333 16.0319368807979 1.17922528632474 0.117388402425538
AT1G57630_at 5.53544572310627 6.00134975555931 7.87593428777627 8.03690090711099 4.48820871949735 4.61381474422996 1.60179547907864 1.60581490784972 2.91936995255745 2.08647311506736 1.33194917411269 1.67438730772575 0.952424703017296 1.96946731572904 2.05482529817108 1.71277778389315 1.76804573916329 1.48400952604742 1.19061190539471 0.417395330795695 0.411139130833676 0.419957549996714 0.424830136831863 0.400807745191114 0.399948964951301 0.404667857307207 0.394867325803981 0.398498166457089 0.394867325803981 0.394867325803981 0.394867325803981 0.396179151490568 0.394867325803981 0.397977297533248 0.394867325803981 0.40550647872548 0.396949777638251 0.394867325803981 1 1 + 21349346 21349797 21349544.182 21349304 21349822 + gene protein_coding_gene FALSE TRUE AT1G57630.1 disease resistance protein (TIR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G25510.1); similar to disease resistance-like protein 9 [Brassica rapa] (GB:AAV88086.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 1.06030703161555 10.9275607376482 3.33641979877147e-07 0.00512941179863126 10.6639661724389 6.81189348902055 1.06030703161555 0.0880319139929915
AT2G05790_at 7.84228165329684 8.42746021732841 4.00044174510823 4.18875500072261 6.65714781444775 6.63394189774363 7.80136514710741 8.10768390052938 8.41212579944022 8.14334546942045 9.33832601817743 9.30580780797723 8.69372692436562 8.89656689658178 9.2880934073244 8.49901501083725 7.08111248553387 8.70837351615892 8.70581790254653 0.195333223403207 0.197186751412743 0.237689791593133 0.259450682427931 0.209905631946883 0.202039692085191 0.206641595572140 0.196202862369066 0.210877842580478 0.197580178479637 0.199775739266359 0.201802410814207 0.199366513881131 0.20948071567752 0.196219239104569 0.195861976455975 0.212826619244895 0.195648131788039 0.194173742533923 2 2 + 2200391 2200889 2200646 2199216 2201481 + gene protein_coding_gene FALSE TRUE AT2G05790.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.18433904024640 -10.9187794574705 3.36346219910367e-07 0.00517065043868207 10.6594410645118 15.2807884131215 -1.18433904024640 0.118925895651139
AT3G26440_at 6.00608292022934 5.70529239526049 7.685246271519 7.68498955112932 5.31912948779545 5.0980353797139 2.38053517638824 2.52611959067189 2.54441971875631 2.68651065211451 2.43443054432356 2.45969954460031 2.33403654195194 2.39477837626046 2.31717606583984 2.50808590132774 2.72147264313916 2.2536446522237 2.95093101387680 0.292585980001492 0.285260317911252 0.30203249793019 0.302318821089953 0.294862610986248 0.286196615838612 0.27212286369027 0.277725436059200 0.27212286369027 0.27212286369027 0.274446868026605 0.290028417900665 0.287592381161830 0.281111575869489 0.280874231505576 0.27212286369027 0.27212286369027 0.272547587021974 0.274304862322453 3 3|0 +|/ 9679760 9680893 9680225.333 9677886 9681137 + gene protein_coding_gene FALSE TRUE AT3G26440.1|AT3G26440.2|AT3G26440.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13000.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.996485528680532 10.915753481459 3.37283582986371e-07 0.0051847232376665 10.6578802910403 7.87828017756722 0.996485528680532 0.069341263746579
AT3G23430_at 4.50245274749638 4.26801363459938 3.19342555672443 3.23110279169870 2.63433920835814 2.34654688654588 5.79882662495758 5.15817388877052 2.84552061473652 3.66648061465395 3.15733084222616 3.56370671618172 2.58803489948021 3.47876609340125 2.84299966563551 2.60174346926982 3.85927730812888 2.95741268158666 3.99072787681233 0.255262362591775 0.246420393456414 0.259073030381491 0.249399033734226 0.24785611766749 0.262652215097251 0.259055023877254 0.263217001601927 0.259013103002744 0.244705488489874 0.244705488489874 0.244705488489874 0.244705488489874 0.24869604750863 0.251804500382785 0.246250494297606 0.262948980859910 0.246921021273347 0.248937595455445 3 0|3 /|- 8388004 8388710 8388312.333 8387515 8393303 - gene protein_coding_gene FALSE TRUE AT3G23430.1 PHO1 (PHOSPHATE 1) mutant is deficient in the transfer of phosphate from root epidermal and cortical cells to the xylem. encodes protein with the mainly hydrophilic N-terminal and the C-terminal containing 6 potential membrane-spanning domains. Identical to Putative phosphate transporter 1 (PHO1) [Arabidopsis Thaliana] (GB:Q8S403;GB:Q9LW54); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G68740.1); similar to putative PHO1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44936.1); similar to Os06g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057682.1); similar to Os02g0809800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048464.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -1.2251319278515 -10.9069149922681 3.40037758113533e-07 0.00522672037996312 10.6533172140783 7.20764449817206 -1.2251319278515 0.128298953422626
AT3G50060_at 2.73445839267057 2.45549440193812 2.85956207246122 2.73260533901841 2.35488178626124 2.02254531464305 4.00464683533227 3.9779998371378 6.28108501128519 5.06768118930952 5.45371511014253 4.83483519764005 4.06401191772357 4.86851041897796 3.99578531654846 3.98921504787701 3.4322710796265 4.27162505340512 5.47708391008315 0.265082454483563 0.260147964157509 0.26903255716194 0.257617279733593 0.265188229573988 0.27178624091183 0.255813419301042 0.255813419301042 0.262280698027740 0.275329948954689 0.264676451753075 0.258546473924482 0.256439648909093 0.26666573351639 0.266352916470343 0.257324096541543 0.273198705180023 0.260573366936842 0.269196680683171 3 3 - 18569164 18569681 18569466.182 18568955 18570089 - gene protein_coding_gene FALSE TRUE AT3G50060.1 myb family transcription factor Member of the R2R3 factor gene family. similar to AtMYB44/AtMYBr1 (myb domain protein 44, myb domain protein r1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G67300.1); similar to MYB6 [Malus x domestica] (GB:AAZ20429.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.02281089974517 -10.8883460289729 3.45903827630136e-07 0.00531654183067519 10.6437098535178 7.8789556705838 -1.02281089974517 0.078372273701268
AT2G21540_at 4.33071925880467 4.14462473139487 2.7305167523493 2.7512046562772 2.94595150887718 2.7727169176256 5.9866927745001 6.16168622238422 6.72407033630425 6.04588807069997 8.33395943727976 7.6141588377546 5.72234610414447 7.43701817431421 7.1203983511452 5.36565574679054 4.76654632225013 7.74308889417661 6.15116931431213 0.211859914654648 0.214295251910722 0.221611751869105 0.231198834650676 0.216693206362032 0.225004510282813 0.220461576929885 0.220672020083948 0.227100594831979 0.215891244547002 0.214530016135279 0.214953931646453 0.219050123789234 0.213639414272588 0.220382836651440 0.211859914654648 0.216082723808999 0.215676486725809 0.214116142618999 2 2 - 9228068 9228857 9228513.545 9227629 9231576 - gene protein_coding_gene FALSE TRUE AT2G21540.1|AT2G21540.2 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative|phosphatidylinositol transporter similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G36490.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to SEC14 (secretion 14) [Arabidopsis thaliana] (TAIR:AT4G39180.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85401.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.949989689139414 -10.8831181687102 3.47575074473716e-07 0.00534188131958654 10.6409999512196 10.5129836314037 -0.949989689139414 0.0535329695057732
AT1G05575_at 5.0949604083098 5.54109220421735 4.82902650092497 4.97527160029045 6.19962950831832 5.5421427608408 1.47029684721896 1.72950724968042 1.83507429216076 1.87837216109184 2.08280066688714 3.11571070640044 2.07785972223212 2.82201830823678 2.29390482231953 1.7622474476864 2.41889552978273 2.18437488980762 1.27114041289868 0.251657027224168 0.270772149561591 0.255512213533754 0.252934050694657 0.258885307357441 0.261520311679674 0.251507533178684 0.251069472932653 0.248752684268861 0.250374584267388 0.247669132702996 0.247669132702996 0.25290938144494 0.248717633086571 0.252722427451399 0.248017116736702 0.260880404696187 0.247669132702996 0.247669132702996 1 1 - 1661834 1662016 1661943.545 1661690 1662186 - gene protein_coding_gene FALSE TRUE AT1G05575.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31945.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38225.1); similar to Os06g0207200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057099.1); similar to Os02g0774200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048273.1) 1.30537548576117 10.8437084485956 3.60458981120750e-07 0.00553953362186368 10.6204996553952 6.42586861850156 1.30537548576117 0.146831560411288
AT3G13100_at 4.56296861906898 5.12955068983395 7.23556479516835 7.41149770000433 4.28197459814017 4.30996200345845 2.36518956987466 2.08217232498949 2.07294589150647 2.45283421505172 2.31079977220875 2.23921870449674 2.26163035094005 2.59240702458519 1.91822726774914 2.55561936303188 2.68775342101999 2.05485311681976 2.35547821414053 0.217062690616791 0.224118460510503 0.217171915716266 0.234079507745704 0.212955541049063 0.226866460391365 0.198660613190491 0.210150013563836 0.200591946287891 0.204065415670065 0.200204071564857 0.201908338640022 0.206209606658127 0.198063459364396 0.198063459364396 0.204135667090538 0.205638872422204 0.204130606946992 0.202484574194912 3 3|0 -|/ 4208903 4209642 4209175 4208742 4214180 - gene protein_coding_gene FALSE TRUE AT3G13100.1 ATMRP7 (Arabidopsis thaliana multidrug resistance-associated protein 7) member of MRP subfamily Identical to Multidrug resistance-associated protein 7 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 7) (ATP-energized glutathione S- conjugate pump 7) (MRP7) [Arabidopsis Thaliana] (GB:Q9LK62;GB:Q8LGU0); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis thaliana multidrug resistance-associated protein 8) [Arabidopsis thaliana] (TAIR:AT3G13090.1); similar to multidrug resistance-associated protein [Thlaspi caerulescens] (GB:BAD11207.1); similar to putative MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAB62557.1); similar to Multidrug resistance-associated protein 8 (Glutathione S-conjugate-transporting ATPase 8) (ATP-ener (GB:Q8VZZ4); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.15429516364563 10.8436445598979 3.60480283475408e-07 0.00553953362186368 10.6204663180964 6.98301823815364 1.15429516364563 0.113854935403755
AT4G30160_at 3.36217935695418 3.83170568611603 4.13145537288676 4.31614874698521 3.81672940074596 4.28838976949146 3.69283233997474 4.10386496953194 2.96535859155466 3.73651022263105 6.28615418945365 6.30337011771632 5.50711082739876 5.7276986486532 6.12729368322137 5.55613513995911 5.41029850925485 4.44951717946975 3.87727224332660 0.267006425381082 0.27066849743396 0.275010972691809 0.275855195260117 0.264174438282786 0.274416902600257 0.271302476974764 0.271254959205827 0.28025093984277 0.266862267855120 0.276979709256925 0.264174438282786 0.267393231386309 0.284680949518209 0.280947943496816 0.270195919197561 0.278738309998956 0.276287148907113 0.264572900697334 4 4|0 +|/ 14758661 14759257 14758917.333 14753438 14760195 + gene protein_coding_gene FALSE TRUE AT4G30160.1 VLN4 (ARABIDOPSIS THALIANA VILLIN 4); actin binding Arabidopsis thaliana VILLIN4 Identical to Villin-4 (VLN4) [Arabidopsis Thaliana] (GB:O65570;GB:Q9SZW9); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN3 (VILLIN 3), actin binding [Arabidopsis thaliana] (TAIR:AT3G57410.1); similar to VLN2 (VILLIN 2), actin binding [Arabidopsis thaliana] (TAIR:AT2G41740.1); similar to putative villin [Oryza sativa (japonica cultivar-group)] (GB:BAD05388.1); similar to actin filament bundling protein P-115-ABP [Lilium lon (GB:BAC77209.1); similar to Villin headpiece; Gelsolin re (GB:ABE83995.1); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Villin headpiece; (InterPro:IPR003128) 1.26755108438495 10.8382261683843 3.62291909440947e-07 0.00556697748046959 10.617637764797 8.54157702503328 1.26755108438495 0.139088797471426
AT3G47600_at 3.51209919843382 4.32333967847039 5.42915999353895 5.95818084346182 6.3700345710832 6.42231475269606 4.57852015207412 4.41607235618247 3.33581767485050 3.91477373413441 4.7642306034798 4.01368664069323 5.40795853593225 4.36114674567252 3.90377611763624 4.82235897415207 5.38114325958285 5.03824701787927 3.86656259164572 0.225892418723305 0.218532576266596 0.23297285901947 0.227842114721904 0.219078440995273 0.234355031712963 0.220141249004042 0.220939008082567 0.250474209109787 0.226778232997943 0.227296357291661 0.22256531056572 0.223351727181499 0.225526225059621 0.223363128478137 0.221471114779635 0.23664184576033 0.225069945354961 0.222272160522678 3 3 - 17550693 17551166 17550923.909 17550323 17552215 - gene protein_coding_gene FALSE TRUE AT3G47600.1 MYB94 (myb domain protein 94); DNA binding / transcription factor Encodes a putative transcription factor (MYB94). similar to MYB96 (myb domain protein 96), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62470.2); similar to MYB60-like protein [Vitis vinifera] (GB:ABK59040.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.42163259028656 10.8357586242930 3.63120195903191e-07 0.00557934181005253 10.6163488364957 9.33485843678697 1.42163259028656 0.170183814676176
AT3G63010_at 5.73254946561743 5.6548833544889 7.1560714291165 7.3945614641486 5.27239554854675 5.79722613406266 2.72723024622896 3.04817691607798 1.90115365218135 2.06787216554993 1.61642239374746 2.01260275193509 2.31106365319417 1.84185020459925 2.0026169141871 2.47245379279184 2.27042197020238 2.22917853936505 1.70970715124899 0.280995821163164 0.272816554643529 0.283173593836109 0.27390072786305 0.261886594244938 0.281093324585929 0.260323538149442 0.254777378265805 0.259233739584268 0.254970277164892 0.259280145857101 0.253675517983518 0.25980236414254 0.252746849652443 0.254866600416837 0.260567850978930 0.252746849652443 0.259086364769746 0.256962522712939 3 3 + 23301374 23301854 23301567.455 23300400 23302461 + gene protein_coding_gene FALSE TRUE AT3G63010.1 ATGID1B/GID1B (GA INSENSITIVE DWARF1B) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. Identical to Probable gibberellin receptor GID1L2 (EC 3.-.-.-) (GID1-like protein 2) (GID1L2) [Arabidopsis Thaliana] (GB:Q9LYC1); similar to ATGID1A/GID1A (GA INSENSITIVE DWARF1A) [Arabidopsis thaliana] (TAIR:AT3G05120.1); similar to ATGID1C/GID1C (GA INSENSITIVE DWARF1C) [Arabidopsis thaliana] (TAIR:AT5G27320.1); similar to (GB:ABG89394.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 1.15800946810401 10.8338230533984 3.6377135051185e-07 0.00558898302926406 10.6153374349575 7.34163045336741 1.15800946810401 0.114969192489038
AT1G01390_at 6.3520864491554 6.46735683951863 5.88587777155499 6.17467367335289 5.83943443460419 5.86993095172399 8.60594904867064 8.53986183973154 4.00554774509698 4.752183681792 3.32134992609302 3.59239894358682 4.6506213521887 4.14980137093985 2.60579694284819 4.8340848778162 5.45913664192204 3.43791909972735 4.30120614609843 0.251718259449730 0.251877619131163 0.254873712541494 0.245399678470701 0.253239741420376 0.264041224869013 0.267883881982218 0.263384944278783 0.25893834341619 0.256892567239591 0.253886049543885 0.254576257282084 0.253548984703136 0.246973610373526 0.257639340375516 0.248333703606106 0.253651501048185 0.246236582604008 0.261426866243792 1 1 - 148322 148878 148638.273 148120 149806 - gene protein_coding_gene FALSE TRUE AT1G01390.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G01070.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.947712441532786 -10.8079840069427 3.72586311615734e-07 0.00572404350535253 10.6018060557593 10.8965802937321 -0.947712441532786 0.0552659470790468
AT4G20140_at 1.85511767638322 1.97918675167685 2.67818666862882 2.92806013798610 3.33721952488204 3.51514841370457 1.88925702937906 2.10417824604393 2.17768990630404 2.76870747919913 3.08167496583937 3.89126431652665 3.21152515448424 3.44200852952699 3.38131733103257 3.53151263530765 2.92278521938551 3.17065787993545 2.61911140324082 0.208214619013735 0.210626171385267 0.202889309248607 0.209533991167016 0.202889309248607 0.205782218845219 0.206276287060584 0.212922230567556 0.211033985254363 0.213178688927298 0.206537088561663 0.202889309248607 0.202889309248607 0.204217822759673 0.221302616466443 0.208048682277858 0.208002075492938 0.203112110025852 0.202889309248607 4 4 + 10887439 10887999 10887721.182 10884207 10888280 + gene protein_coding_gene FALSE TRUE AT4G20140.1 leucine-rich repeat transmembrane protein kinase, putative similar to EDA23 (embryo sac development arrest 23), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G44700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63930.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44328.1); similar to Leucine Rich Repeat family protein [Solanum demissum] (GB:AAT40539.2); similar to putative LRR receptor-like kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC84715.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.982487875759878 10.7972271869153 3.76324025050965e-07 0.00578108967283293 10.5961566559428 5.46125906454531 0.982487875759878 0.068280911179682
AT1G57590_at 5.56885520661308 5.71750443247314 8.43123802118061 8.42353311784975 7.78632690469449 7.17537137142449 7.80255944544737 7.68144917100789 4.76032718715931 6.32524312248913 6.68355773383281 4.52670978290704 6.82756061052825 6.85854983482754 4.25586596859644 6.11774976911804 7.77350011608666 6.73823114093286 4.54981649743598 0.216594189921485 0.212601074712135 0.218298093694193 0.218857677923005 0.219443694160640 0.216497592480631 0.213551971536014 0.214384687342408 0.239715866104653 0.221672797927327 0.214825375434649 0.225756610015737 0.218105392339356 0.216419369091155 0.232162388975809 0.214439801510826 0.220551130976154 0.22455847549854 0.222051691825100 1 1|0 -|/ 21331159 21332273 21331764.4 21331025 21333428 - gene protein_coding_gene FALSE TRUE AT1G57590.1 carboxylic ester hydrolase similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34280.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) 1.13622265357210 10.7938729421563 3.77497836365181e-07 0.00579874426440554 10.5943930708061 13.0406103198189 1.13622265357210 0.110821255776710
AT2G22450_at 8.39035499136896 8.17977511206303 7.33400250152191 7.42686469477086 9.0421209976815 8.4092244966546 5.39329249536342 4.39789285673874 4.62384891268196 4.1405150121227 6.37089024354595 5.91745868179738 6.03414888492023 6.23644315953492 6.42959482491721 4.94939669540578 5.60465555865401 5.9611876655489 3.73966028941612 0.243268444711857 0.245461345733456 0.240443391758036 0.235869363148169 0.244565945031907 0.249433843096493 0.238838695822746 0.240644165083844 0.24271444217583 0.244287513488191 0.233229859378169 0.231438166076194 0.237161001252268 0.239007738209084 0.236768805598795 0.232038864203421 0.248508750184093 0.236935710069107 0.250912312022508 2 2 + 9538937 9539745 9539380.818 9537627 9539994 + gene protein_coding_gene FALSE TRUE AT2G22450.1 riboflavin biosynthesis protein, putative similar to ATGCH (Arabidopsis thaliana GTP cyclohydrolase II), 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II [Arabidopsis thaliana] (TAIR:AT5G64300.1); similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Malus x domestica] (GB:AAQ03091.1); contains InterPro domain GTP cyclohydrolase II; (InterPro:IPR000926); contains InterPro domain 3,4-Dihydroxy-2-butanone 4-phosphate synthase; (InterPro:IPR000422) 1.61634410082865 10.7835203120142 3.81145820280004e-07 0.00585439979950086 10.5889440059014 12.3746810361191 1.61634410082865 0.207978711613613
AT1G68440_at 6.24769179339197 6.41688675226708 6.70481308831577 6.62419279695808 5.87472741568178 5.52756206788785 7.74707969326212 7.88058095736179 7.39003573283476 7.29647088544636 6.64711863149465 6.13401781750334 6.47934469826718 6.77719832508447 5.33579781100225 6.53272340895115 5.92443177210495 5.7658294586532 7.19457577597577 0.178008584922597 0.178008584922597 0.184427674725059 0.187284341116276 0.189612398676517 0.182371287517122 0.187788474940457 0.18136894040657 0.205553622913092 0.178167564248331 0.178008584922597 0.182566809460026 0.182531713120861 0.184714090744494 0.210617566567607 0.183144860714432 0.191211687309497 0.191020117474189 0.187386306215749 1 1 + 25662162 25662667 25662436.727 25661696 25662936 + gene protein_coding_gene FALSE TRUE AT1G68440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25400.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93249.1) -0.99218617394809 -10.7770717486709 3.83437423087191e-07 0.00588921538119616 10.5855453290794 13.3745677565416 -0.99218617394809 0.072077409101926
AT4G38620_at 5.75917965647276 6.22383837810203 6.76516722933853 7.00741944097678 7.34493203916271 7.10924162235715 5.58982700756573 5.37877364342028 5.52222018176413 5.90086120283767 6.66987508587693 6.97169484552249 6.566050701858 7.01115144288398 6.01296818975308 6.76167956735922 6.09651693546955 6.20483506922758 5.46690197343292 0.222820869724133 0.207958804098062 0.216339359110880 0.214026796132821 0.214378367864729 0.225112228322512 0.207958804098062 0.216616361162578 0.220641629854336 0.215917468474077 0.218787476806922 0.215304733735412 0.215423690136847 0.214977603333101 0.208621468874087 0.212726431265582 0.222327429364439 0.216294674077259 0.209179408193403 4 4 + 18054286 18054830 18054530.545 18053545 18054993 + gene protein_coding_gene FALSE TRUE AT4G38620.1 MYB4 (myb domain protein 4); transcription factor Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. Identical to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4) (MYB4) [Arabidopsis Thaliana] (GB:Q9SZP1;GB:O49774;GB:Q7DLI1); similar to AtMYB32 (myb domain protein 32), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34990.1); similar to GHMYB9 [Gossypium hirsutum] (GB:AAK19619.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.11281871931710 10.7625145120185 3.88665684496146e-07 0.0059691275824918 10.5778602951254 12.4807178433855 1.11281871931710 0.105929720735636
AT3G14990_at 10.0965489783968 10.0613892054007 10.3581781340541 10.3906633570673 10.4453234031305 10.0971630731042 7.65448422283516 6.89413321936188 6.15602336806259 7.15955295466042 7.17582357915408 8.30498360748869 7.81459249047227 7.48244709279754 7.57407384775728 8.81816583247369 7.62081520623086 7.90152225328872 7.41373694936145 0.20470797598506 0.200964770048221 0.200964770048221 0.201543950471076 0.200964770048221 0.201765490517507 0.202580990893654 0.205827900381119 0.226216235085354 0.205502616203738 0.200965962567141 0.208161378846658 0.200964770048221 0.206432426018669 0.204427384922136 0.200964770048221 0.203689307026170 0.206642241565501 0.207118239123543 3 0|3 /|+ 5048884 5049594 5049276.875 5047407 5049884 + gene protein_coding_gene FALSE TRUE AT3G14990.1|AT3G14990.2|AT3G14990.3 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative|catalytic similar to DJ-1 family protein [Arabidopsis thaliana] (TAIR:AT1G53280.1); similar to ThiJ-like protein [Brassica rapa subsp. pekinensis] (GB:AAP96742.1); contains InterPro domain DJ-1; (InterPro:IPR006287); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) 1.28648749167672 10.7617073994701 3.88957813172014e-07 0.00597322513688261 10.5774336886183 16.8728974888702 1.28648749167672 0.144957507937306
AT1G04770_at 8.146761926629 8.45329312528331 8.13476721322337 8.17884940523555 8.30298534806654 7.96026610369102 8.93332791864354 8.75789618743029 7.37405207921258 8.60734900277926 6.76893139635182 5.38172028218376 6.35558495450955 6.82133156361433 4.78931287745528 6.1316627048363 6.67818774184171 5.66679842260927 7.15116409546494 0.215352751024624 0.220207079072511 0.215267835049899 0.219657418465272 0.219079419059481 0.226477459800781 0.22434404982099 0.217827149788969 0.227667259276754 0.216109732655332 0.215453470048853 0.235777318846032 0.228745297785264 0.227774821550606 0.240668860941922 0.218226198286395 0.215418170132239 0.237970428198415 0.218096833959807 1 1|0 -|/ 1336656 1337108 1336839.3 1336370 1337848 - gene protein_coding_gene FALSE TRUE AT1G04770.1 male sterility MS5 family protein similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G48850.1); similar to Os05g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055980.1); similar to unknown [Oryza sativa] (GB:AAC72543.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.03263329408471 -10.7345855411849 3.98914107874221e-07 0.00612572504051653 10.5630665351421 15.2510415545641 -1.03263329408471 0.0855067608819189
AT4G25260_at 4.00148704354397 4.26829429628994 1.49327700058887 1.39251837311797 1.89190625971441 1.90359775006798 1.73630109392017 1.82973930233612 3.97370498601178 2.35586911583263 3.04730022077108 3.36131446608876 2.42756996677289 2.00081319657052 3.46261233844763 2.43074204993481 2.04247510604268 2.66311509431541 3.43672962902185 0.235613727984824 0.232993729701712 0.228384863887670 0.226669080552907 0.230675865707723 0.224268540173996 0.227303424739667 0.235868007526983 0.232926416622305 0.225278123901139 0.224075662995007 0.224779566609179 0.221759210646498 0.222174663343878 0.228769556781550 0.221759210646498 0.227400178800632 0.223200373273271 0.228110823769565 4 4 - 12936039 12936585 12936369.636 12935720 12936668 - gene protein_coding_gene FALSE TRUE AT4G25260.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) [Arabidopsis thaliana] (TAIR:AT5G62350.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.932286180118844 -10.7228900116954 4.03292434903231e-07 0.00619255533793911 10.5568520923223 5.28210383085913 -0.932286180118844 0.0519757232484086
AT4G12600_at 7.60173937516189 7.70070326673136 6.09854593950655 6.59385495747273 5.82293359513347 6.42478125130643 7.78965608868337 8.01412255882867 6.94445015961364 6.99103297336665 6.00485751519707 6.8905637570604 5.39005989259937 6.06842057619146 6.55454093776923 5.42299585496882 5.98049653555292 5.23140791459033 6.85279689279298 0.188766846858390 0.188316244790189 0.183268639379138 0.183268639379138 0.199903899888829 0.195028817505938 0.187761101931549 0.191080500281903 0.191150523970403 0.185962211636024 0.202175549188802 0.185698671759427 0.190499448604138 0.191004718491131 0.191530915162523 0.188000666945096 0.192488896636794 0.196396765303917 0.187205031583717 4 4 + 7453324 7454179 7453860.182 7453199 7454478 + gene protein_coding_gene FALSE TRUE AT4G12600.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); similar to ribosomal protein L7 [Hyacinthus orientalis] (GB:AAT08750.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -1.26401759438154 -10.7146208693360 4.06419488993542e-07 0.00624016483400685 10.5524513322334 13.4419644032275 -1.26401759438154 0.141411253222686
AT3G28950_at 8.12611220468834 8.06570144496573 8.98579509407457 8.80707211617591 9.10804630880675 8.53464625876178 7.5158472573091 7.2174743888196 6.03999646634206 6.7414599574546 7.8313980949409 7.58624470868162 7.92780854925363 7.42801455273641 7.36975543682767 7.7663689494778 7.70482125875798 7.47273626408038 6.61658701947138 0.235034189560974 0.226264750473989 0.235689252209225 0.230795277246618 0.231995437193658 0.235018985241053 0.226264750473989 0.235788415827364 0.260045284504736 0.238007523597183 0.232346273324201 0.229726820318039 0.226640106439952 0.250773503550352 0.229319252192940 0.226264750473989 0.243751582448174 0.240270161755337 0.234087423474649 3 3|0 -|/ 10977611 10978567 10978210.3 10977345 10978729 - gene protein_coding_gene FALSE TRUE AT3G28950.1 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative [Arabidopsis thaliana] (TAIR:AT3G28940.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); similar to predicted protein [Asper (GB:XP_001216716.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 1.14874255813214 10.6853114366547 4.17716580168462e-07 0.0064132026553264 10.5368067237202 15.3460408631672 1.14874255813214 0.116527016613870
AT1G04710_at 6.97306321167143 6.74737411870772 5.84711816282388 5.7902390946708 6.22813634327963 6.10472360033427 7.64462437523436 7.56134397939244 6.27939295845303 7.24330806260906 5.11985622860311 6.24189577016035 6.24515733436526 6.1269874306746 6.3302697288345 6.18805420217753 6.13658118634794 6.18246207364397 6.49054930572403 0.197700128620168 0.196226934108154 0.200678217803686 0.206365876243757 0.195066065102155 0.206125423030567 0.205391415659068 0.194977512492331 0.205384510847069 0.196723897118949 0.203006231266259 0.204541549937478 0.196002651123064 0.199812221657846 0.204405919965922 0.194968823137115 0.200900547754143 0.201123872795170 0.198449912073398 1 1|0 +|/ 1323558 1324529 1324050.3 1321903 1324779 + gene protein_coding_gene FALSE TRUE AT1G04710.1 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative Identical to 3-ketoacyl-CoA thiolase 1, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 1) (Acetyl-CoA acyltransferase 1) (Peroxisomal 3-oxoacyl- CoA thiolase 1) (KAT1) [Arabidopsis Thaliana] (GB:Q8LF48;GB:O23014;GB:Q8LPI4); similar to KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT5G48880.3); similar to PED1 (PEROXISOME DEFECTIVE 1), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT2G33150.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase; (InterPro:IPR002155) -0.91936128444274 -10.6826672835040 4.18752363694870e-07 0.00642868628744365 10.5353917757116 12.9833235790708 -0.91936128444274 0.0478135738466197
AT3G17170_at 7.09899800448995 7.15383570729317 6.29047206612116 6.13147848101054 6.93518495038051 6.46437457601787 7.08967914683673 7.01324040786658 7.04561342778613 7.33704233119606 4.78325645337687 6.19649407878939 5.43490263837799 5.05924905867923 6.78951439074403 6.03340598032235 6.08370769695768 5.67346859017734 7.19066903316765 0.213353934921949 0.206874934213316 0.210010663885716 0.215498512480054 0.208369960546468 0.216812570469367 0.212162767664661 0.222561869224444 0.210315916739035 0.210536736154121 0.219525689751919 0.209553909449201 0.207120417444601 0.209785973668395 0.21439286563921 0.205370907374942 0.211417100229708 0.21410854295662 0.212487674739668 3 0|3 /|- 5853311 5853866 5853555.5 5853065 5854912 - gene protein_coding_gene FALSE TRUE AT3G17170.1 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03710.1); similar to ribosomal protein S6 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98957.2); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529) -1.03395960068046 -10.6746279696350 4.2191870940457e-07 0.00647687410806956 10.5310861154532 13.2460869799911 -1.03395960068046 0.0875238266152696
AT1G22650_at 6.09279866132694 5.81159743021751 5.73539100770232 5.68330719106158 4.45893033735645 4.55623269574119 6.25400955162434 6.3111346586819 5.41721718716947 4.7003661687935 4.12889200034686 4.87198601494595 3.61402265554002 4.28159338374496 3.99707486259181 3.90956754627329 4.16240890463147 5.07594348451026 5.19455936262093 0.208093184352808 0.204855768249694 0.208779550604867 0.202759730060388 0.205603060445841 0.210403352653988 0.202759730060388 0.204641523017702 0.208248890784691 0.210308653634888 0.205579346975246 0.203578106022426 0.211266726205727 0.208419344805381 0.217087305415031 0.237752157935882 0.206790151326777 0.205288051575098 0.202759730060388 1 1|0 -|/ 8013722 8014386 8014180.3 8013371 8015980 - gene protein_coding_gene FALSE TRUE AT1G22650.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G72000.1); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.928890616892753 -10.6504447458649 4.3160093635913e-07 0.00662507437311264 10.5181011138504 10.2925420314312 -0.928890616892753 0.0532035119864614
AT3G09020_at 5.97303965315056 6.32737666084099 6.67473401784732 7.00704378507544 6.91992355739567 6.76885461279468 2.48874831033640 2.55416649928578 4.14474707359941 3.14950279896798 2.56233830341866 2.52709487901112 3.34743158390309 3.36644722562567 1.76410475570902 3.0831394304904 4.14277462029519 2.85817214487551 2.88184065113851 0.327816494468766 0.329325101880024 0.325167789455738 0.331694605732393 0.325262967776902 0.341347840422790 0.323623937516626 0.317009190895996 0.327630195323853 0.316494102298296 0.322351096553248 0.316494102298296 0.31876048496773 0.322441351287145 0.320996547690492 0.316494102298296 0.320172489511050 0.318923644809997 0.32070155160214 3 3 + 2753963 2754310 2754138.273 2753312 2754626 + gene protein_coding_gene FALSE TRUE AT3G09020.1 alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein similar to alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G01250.1); similar to Glycosyltransferase sugar-binding re (GB:ABD28693.1); contains InterPro domain Glycosyltransferase sugar-binding region containing DXD motif; (InterPro:IPR007577); contains InterPro domain Alpha 1,4-glycosyltransferase conserved region; (InterPro:IPR007652) 1.03560695286115 10.6461699859238 4.33337334044721e-07 0.00665129474025242 10.5158006413854 8.7634699083332 1.03560695286115 0.088763018582263
AT2G28660_at 5.32507747449806 5.35281899341369 4.52604600426539 4.55267778576986 6.50597638393518 6.13158158371954 3.61580610326855 3.22734469377987 2.12972391585246 2.82905675905962 3.46637047928923 3.53682181744842 2.75582449461377 3.26415282889718 3.57055176899867 3.13893111664098 4.22017994280561 3.88464430139681 2.32120230307676 0.279868947662289 0.274101646927473 0.272910137246676 0.279776759031256 0.270478747471815 0.277371953141073 0.273386666404635 0.274628626663653 0.275235360888527 0.27496202398484 0.273059924936031 0.269116445981971 0.271162280397045 0.269494862733182 0.272871769781566 0.272170021987451 0.268636049719714 0.280524770815425 0.270689029528766 2 2 + 12302636 12303989 12302999.818 12302404 12304194 + gene protein_coding_gene FALSE TRUE AT2G28660.1 copper-binding family protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G53530.1); similar to Os03g0819400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051712.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS75224.1); similar to Os01g0976300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045566.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 1.05091611214042 10.6229895548731 4.42885990988373e-07 0.00679741418968954 10.5032988946008 7.8578389210434 1.05091611214042 0.0936020309025197
AT4G29820_at 6.46943313182536 6.68268243266613 7.54378017291676 7.65846141175797 8.07488227157443 7.93616783752445 5.0312363872194 5.56081944467039 3.75625989001079 4.31546368967408 4.54774738550016 4.01415383697352 4.96996689698376 4.21265903570596 4.19997873235828 4.74608628809863 5.06965372505308 4.24967649454572 4.50679863702196 0.281404041482502 0.261840373956921 0.269556975144182 0.269820855688054 0.267453055563853 0.283956214961469 0.268744585718058 0.268856694113601 0.26991670379676 0.266324917445811 0.266111298174834 0.269331881115015 0.267039755832283 0.261840373956921 0.262173614519188 0.263529283207187 0.276771104912161 0.279890852594947 0.266630771883584 4 4|0 -|/ 14596068 14597207 14596537.7 14595686 14597487 - gene protein_coding_gene FALSE TRUE AT4G29820.1 ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25550.1); similar to Os08g0398800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061747.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047:SF2); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047); contains domain no description (G3D.3.90.79.10); contains domain Nudix (SSF55811) 1.08783981742410 10.6106929373010 4.48043682929405e-07 0.00687612640191758 10.4966483931984 11.2167234054217 1.08783981742410 0.103591244473824
AT3G46900_at 6.07891363296678 6.12043790048988 4.39394565137194 4.24756068287915 5.28656004298913 5.20149546350619 5.97323643816547 6.32679295991309 4.81329941095385 5.39065451669313 3.32443863655198 3.73377582263525 5.43705219550506 4.27650964410786 2.79921185175047 6.33881730255004 6.02202875095533 3.49916490758436 4.82634914993177 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.295154416394659 0.292801574898091 0.292801574898091 0.294350293967314 0.297415971125811 0.297583418729056 0.297727509620446 0.292801574898091 0.292801574898091 0.313157334730617 0.299317248527072 0.292808576160658 0.309699792489974 0.293623263604166 3 3 + 17279999 17280292 17280156.273 17279860 17280495 + gene protein_coding_gene FALSE TRUE AT3G46900.1 COPT2 (Copper transporter 2); copper ion transporter encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast similar to copper transporter, putative [Arabidopsis thaliana] (TAIR:AT2G26975.1); similar to putative copper transporter protein [Oryza sativa (japonica cultivar-group)] (GB:BAB56072.1); contains InterPro domain Ctr copper transporter; (InterPro:IPR007274) -0.96184045480087 -10.5723478621422 4.64549615511971e-07 0.0071289783996467 10.4758264672059 10.1731058039425 -0.96184045480087 0.0682175734989552
AT4G16155_at 6.51467356446901 6.63658798742897 4.56440026174808 4.00112903303395 4.71924766947237 5.03947268695435 7.61491750120266 7.49041772193674 6.83739216784288 7.64173491866859 7.53406133733939 7.88624770774215 6.7487529818294 7.12349808458322 8.53294347271541 6.83667267780739 7.02274429931214 7.48195758638775 7.06717093365161 0.229206420332373 0.228670042905603 0.241603582127201 0.253286258158345 0.241586165994470 0.242955928036943 0.242587521767586 0.239036143436183 0.258997678667702 0.231424676383248 0.228670042905603 0.229077738338914 0.228670042905603 0.234766495608859 0.233912745625023 0.237021607925711 0.246312965384860 0.238957474693100 0.239260615048111 4 0|4 /|- 9153609 9154582 9154080.875 9153379 9157278 - gene protein_coding_gene FALSE TRUE AT4G16155.1 dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) similar to LPD1 (LIPOAMIDE DEHYDROGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G16950.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -1.13466317627346 -10.5705895276328 4.65322143027709e-07 0.0071403682847602 10.4748686290473 13.1115853575402 -1.13466317627346 0.116112052959808
AT1G23480_at 2.59909722712135 3.36556141291843 0.960291390332858 1.05405615014554 2.25397083255257 1.83066787174794 3.91340944782876 4.1369287238022 5.62479014778088 4.13385961095415 5.56625839273687 4.93688702515101 4.49954042702111 4.59065580242863 4.25104218455916 4.02420985598039 2.20609231135299 3.81831493692205 4.93121855977383 0.303974911381051 0.296680590652597 0.313197177531363 0.309145710469447 0.301021611818942 0.319292376036035 0.299890830112786 0.301331168661121 0.311732909386179 0.293851130529266 0.304785410310638 0.293748314118784 0.307121649181575 0.300410938489139 0.299161881512112 0.290387858965007 0.297946615263323 0.307045412329776 0.299243724857555 1 1 + 8335516 8336195 8335733.545 8333009 8336374 + gene protein_coding_gene FALSE TRUE AT1G23480.1|AT1G23480.2|AT1G23480.3 ATCSLA03 (Cellulose synthase-like A3); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA14 (Cellulose synthase-like A14), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G56000.1); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to cellulose synthase-like A2 [Physcomitrella patens] (GB:ABD79100.1); similar to cellulose synthase-like A1 [Physcomitrella patens] (GB:ABD79099.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173)|similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G03760.1); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to cellulose synthase-like A1 [Physcomitrella patens] (GB:ABD79099.1); similar to Glycosyl transferase, family 2 [Medicago truncatula] (GB:ABE81491.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.31950014877011 -10.5465270524576 4.76035112134088e-07 0.00730428276058545 10.4617339303255 7.08087182698386 -1.31950014877011 0.157223323278535
AT1G28330_at 8.10715493341352 8.23848529826632 6.20833017765741 6.02413037390769 9.1114382261942 8.83183795836928 2.344744896051 3.27275699704752 3.85987607639605 2.80984229668488 3.89000397769129 4.15270071091085 4.6868941664126 3.7120024930834 4.02660257556269 3.64763658865958 4.44043721770861 3.44912825539083 3.13194498839418 0.28153456109348 0.276207893115814 0.281272120203246 0.272367552890394 0.284783143440124 0.287059479868639 0.26813554559598 0.281071604358688 0.281893136990699 0.276442068442048 0.267806573755883 0.267140171246255 0.269366534113989 0.277718853063904 0.267640277625938 0.267140171246255 0.268897853866607 0.279339363014946 0.269008955576047 1 1|0 -|/ 9934239 9935155 9934840.889 9933871 9935256 - gene protein_coding_gene FALSE TRUE AT1G28330.1|AT1G28330.2|AT1G28330.3 DRM1 (DORMANCY-ASSOCIATED PROTEIN 1) dormancy-associated protein (DRM1) similar to dormancy/auxin associated family protein [Arabidopsis thaliana] (TAIR:AT2G33830.2); similar to auxin-repressed protein-like protein ARP1 [Manihot esculenta] (GB:AAX84677.1); contains InterPro domain Dormancyauxin associated; (InterPro:IPR008406) 1.39330164026167 10.5410200238093 4.78524325838936e-07 0.00734199873134679 10.4587208195338 10.1513082919480 1.39330164026167 0.172235909110632
AT4G12730_at 4.875026591873 5.32109030450211 0.897252623889382 1.18136032685966 1.42508202168467 2.03649159803192 6.04413975932896 6.57204627106111 7.36928782006195 6.212023636696 9.88330609185022 9.43360167514755 8.16313510493195 9.12485665397508 9.50771467469081 8.36784599485412 5.1786058447885 7.91290458817193 7.00639473402733 0.300467477620355 0.304099481429571 0.314267564716817 0.322392363056388 0.307249986210107 0.306853538558008 0.300467477620355 0.304039277542952 0.300467477620355 0.305375582275760 0.305755535606301 0.305812834148413 0.300608661865731 0.304350267742379 0.303864878798863 0.300467477620355 0.30333408682927 0.304939249901964 0.303375032840629 4 4 - 7491620 7492163 7491881.909 7491380 7492873 - gene protein_coding_gene FALSE TRUE AT4G12730.1 FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (FLA1) [Arabidopsis thaliana] (TAIR:AT5G55730.1); similar to putative fasciclin-like arabinogalactan protein FLA2 [Trifolium pratense] (GB:BAE71278.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.36705074539269 -10.5380073582771 4.79892037267864e-07 0.00736250363576357 10.4570713583163 11.1985937165604 -1.36705074539269 0.167084880847338
AT1G11850_at 6.0939598858348 6.0881483183674 2.72496300491953 2.46471285212095 4.27934450957093 3.93648622246642 5.78213490949124 5.1779793425563 6.59427781260442 6.05710402901464 7.06564041080585 8.62203980957138 5.78418897592833 5.87976828221866 8.11649574740478 6.45318206019011 3.86000048806522 5.61857378136913 6.42287713283184 0.293385884791802 0.296807557465119 0.328191349628781 0.320218254732673 0.285547024827108 0.294916581824315 0.285608358855153 0.288856842181575 0.288143531695421 0.280990441916041 0.285268935765715 0.306623760114455 0.280170919563584 0.280170919563584 0.312134549218966 0.283514932331254 0.300840792152814 0.287542103054389 0.281939826765005 1 1 + 3999240 3999518 3999333.273 3999198 3999875 + gene protein_coding_gene FALSE TRUE AT1G11850.1|AT1G11850.2|AT1G11850.3|AT1G11850.4 |unknown protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001190956.1); similar to PREDICTED: similar to CG5812-PA [Tribolium castaneum] (GB:XP_969409.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Os07g0688700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060703.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1); similar to putative glycine-rich cell wall protein precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC21356.1)||similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: similar to keratin 7, partial [Gallus gallus] (GB:XP_001236709.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) -1.18363954858288 -10.5344072657149 4.8153199178979e-07 0.00738718228604717 10.4550992415097 10.9600023902965 -1.18363954858288 0.128378065223189
AT2G02100_at 8.50593142577417 8.56852889423147 5.45309107766480 5.92935606982789 6.55344689251875 6.6802583335671 3.76024525857561 3.72983031105386 3.60366912430236 3.48819804061426 4.45445315568871 7.21679853487611 4.70987306881375 5.33969974324509 7.53499351612165 4.72079757036625 4.47196886418946 4.65590517358441 3.02567937341503 0.248549718155059 0.252472728415297 0.244359599181227 0.248265296681036 0.254849455799733 0.246079429870089 0.241887354285733 0.24553836638855 0.250880479462805 0.243744543273777 0.246562687045073 0.241887354285733 0.241946885972866 0.2422194128047 0.246948387022945 0.241887354285733 0.241887354285733 0.244661905246885 0.248586228279258 2 2|0 +|/ 528413 528826 528664 528349 529107 + gene protein_coding_gene FALSE TRUE AT2G02100.1 LCR69/PDF2.2 (Low-molecular-weight cysteine-rich 69); protease inhibitor Identical to Low-molecular-weight cysteine-rich protein LCR69 precursor (LCR69) [Arabidopsis Thaliana] (GB:Q39182;GB:Q42011); similar to LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02130.1); similar to protease inhibitor II (GB:AAA91049.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Gamma Purothionin; (InterPro:IPR008177); contains InterPro domain Knottin; (InterPro:IPR003614) 1.01422490578466 10.5206213287728 4.87868304250917e-07 0.00748389978720907 10.4475369349380 10.5278743909707 1.01422490578466 0.0861375997519623
AT4G11600_at 10.4306602826689 10.6521265619071 11.0713518809800 10.9802593019414 11.1938271169391 10.9030857074943 10.0797932879202 9.94181744693817 8.84524656235989 9.19594901211897 10.2065818510168 9.84787417831988 10.2320405920618 10.2512933707874 9.54950546737917 9.76547170780132 10.4185793493042 10.0388073775423 8.59500551144977 0.137892526033323 0.131702176778328 0.138516839484440 0.132227533131882 0.140447626552590 0.133622593096554 0.138217150490399 0.127026342399177 0.153230181619719 0.141863115464698 0.129612027732635 0.130030914155992 0.130877013029884 0.143317500934043 0.13742828769868 0.130084452235944 0.142357650468465 0.133110565724049 0.143579620704685 4 4|0 -|/ 7010172 7011100 7010562.125 7009763 7011369 - gene protein_coding_gene FALSE TRUE AT4G11600.1 ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB:O48646;GB:Q94BV3); similar to ATGPX7 (GLUTATHIONE PEROXIDASE 7), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G31870.1); similar to glutathione peroxidase [Malus x domestica] (GB:AAQ03092.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Src homology-3; (InterPro:IPR001452); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.960533574223593 10.519421181855 4.88424177887653e-07 0.0074919384646187 10.4468778086191 20.1153666643917 0.960533574223593 0.0694190984570295
AT3G19550_at 6.74507342501055 7.46224596218971 8.24163731437485 8.28352114589108 8.61476172632106 7.93979644053567 4.04157583230452 4.45134496554992 3.04433636283690 6.6807612587859 5.16576937725225 2.62280910151353 4.82978159542308 5.12405245014755 3.12782073780098 4.22089049528176 5.9900511310751 5.94548285403786 3.22108220857863 0.287589233959612 0.296409632996927 0.300162507395421 0.297128319223027 0.289975018686407 0.298050903889219 0.283967002296603 0.283967002296603 0.290555648346580 0.286991760541535 0.285600364495307 0.300964494882663 0.291698358058120 0.288784030627285 0.294900769239486 0.292941110903384 0.289657099069752 0.290257168575384 0.289572307995003 3 3 - 6787477 6788140 6787631.091 6787247 6788298 - gene protein_coding_gene FALSE TRUE AT3G19550.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98694.1); similar to Os12g0507700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066848.1) 1.45390402579985 10.5168137801884 4.89634218530828e-07 0.00751000964382584 10.4454453787034 11.4443573487973 1.45390402579985 0.184737744889327
AT1G73680_at 6.97706549492541 7.13498406935225 7.56379458781134 7.77734349175525 8.12365181661238 8.05977861667907 6.12668307526704 6.04774995648723 5.20210795573039 5.5611970059452 5.6006906597385 5.20850552941372 5.89782944836078 6.08982065380636 5.139414123513 5.81522404195114 6.98372097120695 5.67978512918936 5.12310124946097 0.209257287591043 0.202904299649116 0.205706795501219 0.208657649101606 0.228808347289465 0.213189969861005 0.207466674282908 0.207909480286547 0.216402142130482 0.207445705942113 0.203772915893403 0.206696272494549 0.203850465433987 0.204140234354183 0.21151136080392 0.204123199847974 0.208151814163903 0.206965971107979 0.206360728304493 1 1|0 -|/ 27707915 27708604 27708220.1 27707605 27711175 - gene protein_coding_gene FALSE TRUE AT1G73680.1 pathogen-responsive alpha-dioxygenase, putative similar to ALPHA-DOX1 (ALPHA-DIOXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G01420.1); similar to TPA: TPA_exp: alpha-dioxygenase 3 [Lycopersicon esculentum] (GB:DAA01542.1); similar to alpha-dioxygenase 2 [Solanum lycopersicum] (GB:CAH64542.1); similar to alpha-DOX2 [Lycopersicon esculentum] (GB:AAR05647.1); contains InterPro domain Animal haem peroxidase; (InterPro:IPR002007); contains InterPro domain Haem peroxidase; (InterPro:IPR010255) 0.907963280904244 10.5150052318598 4.90475436086896e-07 0.00752242176326473 10.4444514671631 12.7750526669577 0.907963280904244 0.0492070927861584
AT4G01080_at 3.79504195514592 4.39136872749399 3.92759149954994 4.23809455578392 2.89532989224934 3.38642082079381 9.29815164417707 9.4158250827774 4.03496463614042 7.0554973006086 5.7204693063071 6.06489376683053 6.66431643275298 6.22674183461424 5.92819197727162 7.29536488940348 7.1522057374035 6.26229672625738 6.35817993319583 0.270160906401097 0.2629297110682 0.263351003375549 0.265558285891043 0.264595206546254 0.268188283583339 0.267708960839058 0.267656099642224 0.264821118227788 0.26484591234439 0.266593020640865 0.262405636980753 0.260797890692709 0.268762729293721 0.267891232853588 0.260797890692709 0.274757685123599 0.271989726551356 0.268830430009827 4 4 - 466762 467195 466986.182 466391 468294 - gene protein_coding_gene FALSE TRUE AT4G01080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01430.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.25757076654876 -10.4980229950961 4.98451298195346e-07 0.00764424910912382 10.4351047250965 11.2837400424981 -1.25757076654876 0.145513670914210
AT4G04620_at 6.94541944148709 7.08944353606413 8.27644229789001 8.14325431421052 8.45516425832351 7.9997973988267 6.68203428453117 6.68102187276954 6.30260795886671 5.75766107205773 6.44781856282244 6.30749674883671 6.66608329048648 6.76778163645575 6.24668687230574 7.53114068059031 7.19335301674898 6.76870403604115 6.21384928879013 0.177008741492439 0.175172417056941 0.176755938449085 0.181905099242425 0.184545105192764 0.172575926537938 0.170144035121948 0.180266829385944 0.207956154523533 0.190756665176134 0.179972977553448 0.171047783209882 0.179948687804532 0.177007979292278 0.175191563290286 0.178738526862824 0.183052381284858 0.173350721024279 0.181081193054304 4 4|0 -|/ 2328669 2329898 2329044.5 2328447 2330198 - gene protein_coding_gene FALSE TRUE AT4G04620.1|AT4G04620.2 ATG8B (AUTOPHAGY 8B); microtubule binding similar to APG8A (autophagy 8A) [Arabidopsis thaliana] (TAIR:AT4G21980.2); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar to Os08g0191600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061171.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 1.00947255794873 10.4831973820538 5.05529260485457e-07 0.00775229120954448 10.4269243257642 13.9503251148999 1.00947255794873 0.0858047501354577
AT4G15093_at 5.84007284263969 6.52174240044043 7.01661482013245 7.12729390592356 8.13274499271695 7.65351171926184 5.67157002321957 5.93501496724852 4.73436610006017 5.17595339479852 6.09321730165713 5.84676370557419 6.16100245597073 6.69886387383274 5.67836423397464 5.73066177682936 6.52743173327385 6.4787184583831 5.29954325720362 0.218671062046359 0.208184482896415 0.215873756923560 0.210699073935040 0.217584588769010 0.215949124382071 0.211678364379614 0.218615276075593 0.214332299133233 0.207879056876207 0.215489844169846 0.210630357367865 0.216402807718552 0.226358529607504 0.212453668980809 0.213928335455427 0.211938358703880 0.214503016832906 0.2085883183672 4 0|4 /|+ 8618932 8619417 8619134.7 8618340 8619643 + gene protein_coding_gene FALSE TRUE AT4G15093.1 catalytic LigB subunit of aromatic ring-opening dioxygenase family Identical to 4,5-DOPA dioxygenase extradiol-like protein [Arabidopsis Thaliana] (GB:Q949R4;GB:O23363); similar to Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B [Medicago truncatula] (GB:ABE80304.1); contains InterPro domain Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; (InterPro:IPR004183) 1.28618249643559 10.4636606995846 5.15023174481997e-07 0.00789736535750695 10.4161150219467 12.3482368055101 1.28618249643559 0.15244446284088
AT2G04450_at 8.39665646314771 8.55984344444145 9.92978047174662 10.1000291354855 6.98208355320598 6.9613775113349 2.52933209386819 3.15496081604651 4.14729010637136 3.56766981479848 3.51065998522731 3.27082450033326 2.7892412371384 2.89302299318606 2.7840431755548 3.37191469225234 3.8748654213635 2.83622373241211 3.56799129294202 0.360583547140481 0.358291095220466 0.359591415016283 0.357967374177681 0.369954944022032 0.358624299678583 0.339101615517703 0.342115847969718 0.340854497426567 0.340992425286823 0.340005002917079 0.339101615517703 0.340198188101747 0.339101615517703 0.345941477237626 0.339101615517703 0.348832377220004 0.339101615517703 0.339101615517703 2 2|0 +|/ 1544143 1545243 1544698.8 1543317 1545459 + gene protein_coding_gene FALSE TRUE AT2G04450.1 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD binding / hydrolase Identical to Nudix hydrolase 6 (EC 3.6.1.-) (AtNUDT6) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (NUDT6) [Arabidopsis Thaliana] (GB:Q9SJC4); similar to AtNUDT7 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 7), hydrolase [Arabidopsis thaliana] (TAIR:AT4G12720.3); similar to Nudix hydrolase 5 (AtNUDT5) (GB:Q9SJC6); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) 1.11924259635673 10.4405422491297 5.26507976958338e-07 0.0080729468107022 10.4032805724336 10.5404245387700 1.11924259635673 0.115759812403119
AT1G61500_at 3.74430547885671 3.85214628785569 2.21236562681887 2.18742577722081 2.36099453968388 2.45377063172032 3.82156927669277 3.13848934635756 3.54699356099505 4.09144893185213 3.05844734147246 3.82383037431183 2.8727014501881 2.93681201989346 3.41265172267311 3.19182009219663 2.57507117240351 2.89667406784130 4.47019923932789 0.20447884149058 0.205847573558568 0.219523750078105 0.208959960659179 0.205441884188967 0.211779864064554 0.201653637126180 0.20213618788104 0.201801713205203 0.201823366277467 0.200716026316695 0.205033092763263 0.204221949431663 0.199965458936374 0.195788137853869 0.200585814492600 0.200134450150906 0.195788137853869 0.216945749536419 1 1 - 22693403 22693657 22693497.091 22693394 22696546 - gene protein_coding_gene FALSE TRUE AT1G61500.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61440.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.13785066709109 -10.4164142553026 5.38790925996918e-07 0.00826074247738475 10.3898352739674 6.53749084107461 -1.13785066709109 0.120823542914800
AT3G12920_at 8.84092388735854 9.0701403229609 7.93257564402433 7.65267907881297 7.7299141763047 7.6634861105766 9.24423960338918 9.43136736666355 9.46950805454818 9.50274336501077 9.52114728797843 9.61245508011501 9.00086752355171 9.13097485771755 9.37767183901262 9.41083876548648 8.18429734408868 8.3933512179649 9.79256889871006 0.155020379290731 0.148773678162742 0.156899431186491 0.156400874280993 0.158628517052625 0.150289991640081 0.142942154550869 0.145792039121570 0.14774923093768 0.14663655180356 0.142942154550869 0.142942154550869 0.143719767786999 0.144328287150227 0.143312560464757 0.142942154550869 0.161095395997907 0.153214315689513 0.146244385091021 3 3 - 4122135 4122491 4122322.182 4121890 4123515 - gene protein_coding_gene FALSE TRUE AT3G12920.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G79110.2); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE88778.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.955663496298485 -10.4017410977966 5.46412245164873e-07 0.00837704613062267 10.3816334128090 17.7792777382176 -0.955663496298485 0.0714176594026055
AT4G21120_at 6.32980035382409 6.25252715477137 6.39889758634651 6.77734479520324 5.19532807260673 5.07067063119603 1.56058503979082 1.62356361513001 1.84519361931777 1.98696797716007 1.68240263189451 1.88380218737402 1.83600030419223 1.72613757355342 1.91850520274078 1.55653672358987 2.22819800206901 2.13870292943470 1.81118818966677 0.332831716139463 0.333455300330782 0.32977127556672 0.342508273963340 0.329288111415896 0.326142327743928 0.319616340412951 0.329098181101186 0.319716688988534 0.319616340412951 0.323041655134675 0.319616340412951 0.325005406269617 0.320825230920646 0.323447470572472 0.319616340412951 0.32552822899386 0.319685775120869 0.319616340412951 4 4 + 11273195 11273664 11273384.273 11270056 11273984 + gene protein_coding_gene FALSE TRUE AT4G21120.1 AAT1 (CATIONIC AMINO ACID TRANSPORTER 1); cationic amino acid transporter cationic amino acid transporter similar to CAT5 (CATIONIC AMINO ACID TRANSPORTER 5), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT2G34960.1); similar to Os01g0209800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042365.1); similar to Amino acid permease family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99390.1); similar to Os03g0641200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050746.1); contains InterPro domain Cationic amino acid transport permease; (InterPro:IPR004755); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.954555164716793 10.4006202890851 5.46999182944571e-07 0.00838549747454028 10.3810061266107 6.7772908009774 0.954555164716793 0.0710787595384999
AT1G62800_at 6.18479342789903 5.93438404221359 6.53279915909946 6.42510789099197 6.96968764463887 6.57316845516337 7.03183278309233 6.80911924544101 3.68975138789782 6.20434124610569 7.07787283273017 6.65677993379388 7.2728026054114 7.93223498892545 6.43284877836658 7.24138137362497 7.69732036267139 7.83079994825474 6.1852231895471 0.190322107877092 0.18815841548438 0.192140475717292 0.185364900163844 0.185745786641161 0.190572820955174 0.194896849361123 0.189459709784713 0.223610946302529 0.193152923521915 0.185199721795773 0.188210405268591 0.183765560685076 0.195390738445176 0.190463220475814 0.185213373788214 0.195798624703694 0.184656867153432 0.197662902141299 1 1 - 23257602 23259429 23258697.909 23257368 23261128 - gene protein_coding_gene FALSE TRUE AT1G62800.1|AT1G62800.2 ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ transaminase/ transferase, transferring nitrogenous groups Encodes aspartate aminotransferase (Asp4). Identical to Aspartate aminotransferase, cytoplasmic isozyme 2 (EC 2.6.1.1) (Transaminase A) (ASP4) [Arabidopsis Thaliana] (GB:P46646;GB:Q9SI69); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G19550.1); similar to aspartate aminotransferase (GB:AAA79372.1); similar to aspartate aminotransferase (GB:AAA79370.1); contains InterPro domain Aspartate/other aminotransferase; (InterPro:IPR000796); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 1.02157078730036 10.3933402390414 5.50828221004478e-07 0.00844364579977764 10.3769289566085 12.8713751031454 1.02157078730036 0.0917566862505576
AT1G08650_at 5.3746108705204 5.77413501788131 5.09951445208532 5.72288087174102 6.45327530368612 6.18305489735423 5.49904815174675 5.49124889710456 4.69156063897689 3.60134940468224 6.73114558837236 5.63859974319712 5.80726651864055 6.38847045565279 6.38322728624819 4.95108161323824 6.64170916271325 4.23926982366287 3.03011634578658 0.242650059902936 0.240410985827027 0.244311485397114 0.240812350912059 0.239246686913257 0.239165264032999 0.238345041653281 0.250213788894414 0.257355250293376 0.24776066450842 0.236681406423957 0.239267510841069 0.241557243462718 0.236681406423957 0.243716229554278 0.236681406423957 0.253760757589117 0.247148453347851 0.251583994317737 1 1 + 2752467 2752923 2752679.909 2752159 2753706 + gene protein_coding_gene FALSE TRUE AT1G08650.1 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT3G04530.1); similar to phosphoenolpyruvate carboxylase kinase [Lotus japonicus] (GB:BAC20362.1); similar to phosphoenolpyruvate carboxylase kinase [Glycine max] (GB:AAN12515.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.20158739552693 10.3778498909155 5.59072569189333e-07 0.0085694643405341 10.3682379031358 10.5106902596554 1.20158739552693 0.136404528571372
AT2G36380_at 6.80078840928205 7.14077775499266 6.68079285514797 7.08906282608762 8.41744600543401 7.77618189905528 6.26394370035056 6.09242876925048 6.06662156198355 5.62540778805928 7.91963291035776 6.64691327281185 6.96135028093 8.23482747982813 6.62604970464143 7.05807940148835 6.73823690146527 7.91073659923925 5.34909562792273 0.260518970258306 0.245974037575737 0.249116329919455 0.241406884214949 0.249053006647494 0.255861819713208 0.250833713210933 0.244132410540136 0.254913334707022 0.255448891831004 0.251548542671395 0.249671782182132 0.241380552838676 0.254434012970973 0.242764346910105 0.24333826599654 0.269503987078895 0.241380552838676 0.244361059190117 2 2|0 +|/ 15269989 15270628 15270323.7 15264662 15270843 + gene protein_coding_gene FALSE TRUE AT2G36380.1 ATPDR6/PDR6 (PLEIOTROPIC DRUG RESISTANCE 6); ATPase, coupled to transmembrane movement of substances Identical to Pleiotropic drug resistance protein 6 (PDR6) [Arabidopsis Thaliana] (GB:Q7PC87;GB:Q56YS3;GB:Q9SJR6); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to ATPDR11/PDR11 (PLEIOTROPIC DRUG RESISTANCE 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G66950.1); similar to ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G16340.1); similar to Pleiotropic drug resistance protein 2 (NpPDR2) (GB:Q2PCF1); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59574.1); similar to Pleiotropic drug resistance protein 1 (NtPDR1) (GB:Q76CU2); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.24899478207617 10.3634976549528 5.66830609193181e-07 0.00868781274710389 10.3601662573706 13.5038544332003 1.24899478207617 0.14713861737825
AT4G14365_at 9.7702532749054 9.65968980625696 10.7846412724266 10.6164090507512 9.56920299698933 8.93477285881248 5.38077158492345 5.01120212293697 8.79641075133292 6.81535104639735 7.30770870424613 8.39925883581225 6.08579852897747 7.84665543689107 7.46107844577187 6.49887002858699 6.61526230987892 7.21285409752396 6.41311693160386 0.21354897688253 0.207408291086231 0.217103661141472 0.213301767295007 0.211154622213687 0.207408291086231 0.217297642292254 0.222503287916529 0.212527554001430 0.212708044798968 0.210491325672369 0.207408291086231 0.219198923896415 0.214752808671970 0.209433443423762 0.210924950949567 0.215049587673189 0.210671879356239 0.214642733981455 4 0|4 /|- 8271675 8272248 8271848.143 8271460 8273733 - gene protein_coding_gene FALSE TRUE AT4G14365.1 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein similar to zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G23280.1); similar to auxin-regulated protein-like protein [Populus trichocarpa] (GB:ABG37641.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.17879345141945 10.3598070615207 5.68844343826405e-07 0.00871810841348348 10.3580876985993 15.9758988917865 1.17879345141945 0.131750136458255
AT4G31120_at 5.65383096087467 5.87338938686315 5.28743979461332 5.41618019708002 5.15312890825125 5.10427867354194 6.04513693625298 6.3735569047679 5.34557090776217 5.10451481669091 3.80327675461721 4.06504368307628 4.14974822552291 3.91908759048735 4.08002928560111 4.81659983321788 4.43153800391686 4.04522280502431 5.52807866421147 0.222098680654608 0.209243338624001 0.220402840724255 0.217830878370609 0.208103140804031 0.208271536026525 0.219246084914844 0.209599047739893 0.235307904580305 0.209985926691882 0.225595217019267 0.213356494599743 0.219659231610629 0.208526401864609 0.209497715758438 0.207449566513594 0.217316688964319 0.219893103698347 0.208655688912463 4 0|4 /|- 15132204 15132802 15132494.125 15132017 15136643 - gene protein_coding_gene FALSE TRUE AT4G31120.1|AT4G31120.2 Skb1 methyltransferase family protein similar to Os02g0139200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045843.1); similar to SAM (and some other nucleotide) binding motif; Skb1 methyltransferase [Medicago truncatula] (GB:ABE80388.1); contains InterPro domain Skb1 methyltransferase; (InterPro:IPR007857) -0.954229088678284 -10.3543455126270 5.71838618756644e-07 0.00876342683244557 10.3550094879366 10.3583042547329 -0.954229088678284 0.0723993405062421
AT1G12750_at 7.02629702541779 6.55447892718576 5.15739576775828 4.86452707299076 5.96709256406677 5.96051275128044 7.34184771427576 7.22767037675014 7.4261951773634 7.7897354968579 7.38724160080078 8.01616982747039 7.13441454124112 7.17021638177732 7.24803691202426 7.10093084637415 6.61451828334446 7.07905746839969 8.03481395645153 0.170678855855273 0.165863040079769 0.174123069120672 0.177592585428234 0.164819703660988 0.174580925773943 0.169912053226892 0.167538554421883 0.166702227198113 0.174507908937728 0.161357933176704 0.177461310023658 0.163551280418760 0.166990433380977 0.175298202076861 0.168703810029146 0.176022210404220 0.161591514187850 0.16784260798787 1 1 - 4345117 4345829 4345436.545 4344983 4348326 - gene protein_coding_gene FALSE TRUE AT1G12750.1|AT1G12750.2 rhomboid family protein similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -1.04080822471427 -10.3537980582945 5.72139699012083e-07 0.00876746874766117 10.3547007868574 13.7470134964174 -1.04080822471427 0.0981182018365755
AT2G32140_at 2.52531400207199 2.32069325356343 6.19206657054624 5.72792680739454 3.49555951991706 3.12747365481920 2.13836393383222 2.06153202862640 2.37653879199317 2.01433384529321 1.65916222308526 1.67973568603845 2.01481059070542 1.30053974388011 1.77024007772755 2.06018554278264 1.86518572192496 1.78843929609544 1.53390923449320 0.254821529094084 0.250337078106111 0.27127825809682 0.275311150637143 0.261510182798306 0.245305596453861 0.241212159197811 0.241212159197811 0.250666259116706 0.243185675740311 0.242576652188791 0.252468057634864 0.247148149446768 0.249135905134003 0.241398934266611 0.249290007123001 0.245358860544006 0.248983830410049 0.242830227273755 2 2 - 13663349 13663909 13663657.2 13662704 13664242 - gene protein_coding_gene FALSE TRUE AT2G32140.1 transmembrane receptor similar to ATPP2-A5, transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G65390.2); similar to TIR; Disease resistance protein [Medicago truncatula] (GB:ABD28631.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Protein of unknown function DUF641, plant; (InterPro:IPR006943) 1.08332045166627 10.3501179219041 5.74168105489766e-07 0.00879797788041969 10.3526249159473 5.31972354678297 1.08332045166627 0.109269422095027
AT3G09600_at 3.31491399889448 3.25354665614740 3.35824447628779 2.91740818975169 2.82989952466872 2.83442049968023 5.4107121090555 5.10596871176773 3.67252114554407 4.09627162289587 2.99664841949102 3.01726072057296 3.21535786660841 3.47970976965816 2.52829360562740 4.26946212402978 3.51570162132218 3.15113487738017 4.31084428495213 0.157055873335954 0.154637748049712 0.158417090647469 0.158506661037356 0.157093409181204 0.160214883732382 0.165447314233959 0.162581821696287 0.156817694377368 0.156574558211231 0.155951813049188 0.155865567816593 0.154693443487853 0.157176773905662 0.157530547965135 0.160805244384692 0.158735037895608 0.159924775813003 0.159181971700117 3 3|0 +|/ 2946483 2948181 2947212.933 2946411 2949000 + gene protein_coding_gene FALSE TRUE AT3G09600.1|AT3G09600.2 myb family transcription factor|DNA binding / transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02840.3); similar to MYB transcription factor MYB118 [Glycine max] (GB:ABH02853.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G02840.2); similar to MYB transcription factor MYB118 [Glycine max] (GB:ABH02853.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.02057087762347 -10.3253198837777 5.88041027926275e-07 0.00900996462988639 10.3386052110934 7.27726017580683 -1.02057087762347 0.0933519736280339
AT4G03500_at 1.42560693446133 1.61299563579650 2.11561324608456 1.8379748401262 1.36694455767477 1.03780774446999 4.8521031697539 4.46251341720758 1.46433401174989 3.34137097466217 1.43550806161684 0.301252568857578 1.75113159454952 2.40600372803413 0.987795892115402 2.54745465133094 2.33236805620195 2.27075768755217 2.34339701690180 0.214102592771727 0.218121981810296 0.222279979560351 0.22084414316145 0.215063986140566 0.226911815773168 0.223900198925939 0.235888242312842 0.216414843133586 0.229814976299826 0.214102592771727 0.21996039815139 0.214525423065136 0.214102592771727 0.217854780095269 0.218402488847537 0.216563439396232 0.214102592771727 0.224246889001946 4 4 + 1556056 1556489 1556294 1553090 1556569 + gene protein_coding_gene FALSE TRUE AT4G03500.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G03460.1); similar to Ankyrin [Medicago truncatula] (GB:ABE77954.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -1.06385983164413 -10.3016371214525 6.01629590900662e-07 0.00921756696218905 10.3251642278001 4.40747895876532 -1.06385983164413 0.105592962472267
AT2G25850_at 7.05351606875305 7.09787956373728 6.94857515963267 6.98081462719322 7.06193676636305 7.22166717149551 4.50453757652986 4.84304347067069 6.12195558165703 6.48469090892641 7.27849653073331 7.83010423469698 6.64118840643562 7.2953716436456 7.05757683889096 7.61770782110591 6.96856689078488 6.99822285212277 6.9893508492592 0.186415176307612 0.187497037247348 0.194596086700895 0.186451179226278 0.186206432320013 0.191099765101110 0.196542835829926 0.196471890134989 0.196923667567659 0.199732704728562 0.186818764895444 0.182414591503703 0.197257498491935 0.190305320065844 0.189069779939028 0.182414591503703 0.196385987861302 0.186319955815717 0.198906918042872 2 2|0 -|/ 11033222 11034180 11033897.6 11032588 11037705 - gene protein_coding_gene FALSE TRUE AT2G25850.1|AT2G25850.2|AT2G25850.3 nucleotidyltransferase family protein|nucleotidyltransferase similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.6); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010) 0.928704775134759 10.2925559122721 6.06930067325075e-07 0.00929816863142016 10.3199967808791 13.3354480583384 0.928704775134759 0.0654658143722928
AT2G10940_at 10.0854959246034 10.6580344049879 4.79146156012965 5.08436604727703 8.76948839776468 9.2897064662949 9.40789093328723 10.1982102162877 11.7253105350352 10.9778902910781 12.5414479426199 12.2315481459402 11.7081475817329 11.4920791765833 12.4386915800447 11.0166818301053 9.03321781269686 11.8383151426245 11.5387315355427 0.129699677988252 0.129699677988252 0.188761674259175 0.171848111713330 0.136826029073777 0.143835161785132 0.135205460212432 0.135157934931937 0.141347145763889 0.131297742603656 0.133538251208884 0.132406064141827 0.133900956771097 0.13515068724036 0.133030942995607 0.129699677988252 0.14675007442438 0.129699677988252 0.132728297710700 2 2 - 4318260 4318598 4318432.182 4317494 4319185 - gene protein_coding_gene FALSE TRUE AT2G10940.1|AT2G10940.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71274.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.49005677713341 -10.2884681335668 6.09332495444789e-07 0.00933436449771871 10.3176682846004 20.0113285465434 -1.49005677713341 0.197981248567749
AT1G75540_at 5.18719826577284 5.45823510691888 5.02670604999617 5.09019211998392 6.49881273817021 6.27047591961838 4.74531984647694 4.62158969726964 5.5142131880136 4.84072715243418 6.34505905496846 6.62583331763291 6.52237878178113 6.21645186110871 6.48179812385011 6.01945819886141 6.0679574525748 5.74209919327644 4.99637004256702 0.219173538719073 0.210420574093579 0.222227908599622 0.220240676440756 0.210860086800395 0.220550556527308 0.213484937358342 0.22130375031892 0.218366828269617 0.206438109523592 0.213773872192903 0.213765859308793 0.206438109523592 0.206438109523592 0.209425499977533 0.209506393202867 0.213175545294667 0.206438109523592 0.206438109523592 1 1 + 28370212 28370912 28370498.182 28369720 28371313 + gene protein_coding_gene FALSE TRUE AT1G75540.1 zinc finger (B-box type) family protein Identical to Putative salt tolerance-like protein At1g75540 [Arabidopsis Thaliana] (GB:Q9LQZ7); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT4G39070.1); similar to H0115B09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67391.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.926993507417204 10.2608975302074 6.2580756504532e-07 0.0095861202813642 10.3019237089250 11.0471826975317 0.926993507417204 0.0658832316766815
AT3G10410_at 9.96175118675087 9.86455081203894 9.9772435496568 9.86425190209751 10.3909834173666 10.0554950376656 8.99819251365821 9.03329154519222 6.73739169552624 8.01380240480024 8.4207621471594 8.00341929828186 8.57510265105397 8.57477341509166 8.2092790252272 7.96765409485839 9.40971150801396 9.06196255668045 7.12831170366803 0.211766376265592 0.210345325987956 0.210399361795039 0.215513180454849 0.210345325987956 0.213505733090424 0.210345325987956 0.216048928718712 0.233143956321343 0.224099273891791 0.217382778137653 0.219164352012157 0.210345325987956 0.210360065733612 0.223298633397570 0.219506418229347 0.210929221683547 0.210345325987956 0.240921038706325 3 3|0 -|/ 3235553 3236460 3236030.1 3235296 3238118 - gene protein_coding_gene FALSE TRUE AT3G10410.1 SCPL49 (serine carboxypeptidase-like 49); serine carboxypeptidase Identical to Serine carboxypeptidase precursor (EC 3.4.16.-) [Arabidopsis Thaliana] (GB:P32826;GB:Q42107;GB:Q9CAE5); similar to SCPL48 (serine carboxypeptidase-like 48), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G45010.1); similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to carboxypeptidase type III [Theobroma cacao] (GB:CAC86383.1); similar to carboxypeptidase Y-like protein (GB:AAB04606.1); similar to putative serine carboxypeptidase precursor [Gossypium hirsutum] (GB:AAL67992.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.921105724000469 10.2577540229688 6.27716430335134e-07 0.00961473256344324 10.3001241646631 17.6787208397420 0.921105724000469 0.0638192706210553
AT3G50260_at 6.74208148932332 6.32093151437376 7.04841170145941 6.72403409645123 6.33263959624354 6.0903695859991 3.13104020373805 2.78738718263269 3.49882053866134 2.95903292706966 3.28127291037651 3.50845717387440 3.00256065063782 3.56626699217035 3.51030193157415 3.65667437175998 3.55304035111215 3.79097390642042 2.77760582839903 0.383311925448889 0.387093410340582 0.392157282909157 0.387183350870404 0.389949441485713 0.392201834119628 0.381072528704292 0.384265917318273 0.386006154475338 0.381072528704292 0.381072528704292 0.383547063958303 0.384361911351702 0.381072528704292 0.38584443029356 0.381072528704292 0.384394819878786 0.387655317216306 0.381072528704292 3 3 + 18645790 18646085 18645955.091 18645558 18646380 + gene protein_coding_gene FALSE TRUE AT3G50260.1 ATERF#011/CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1); DNA binding / transcription factor encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G67190.1); similar to dehydration responsive element binding protein [Gossypium hirsutum] (GB:AAQ08000.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.10435537606770 10.2433253326107 6.36559403437809e-07 0.00974954382305348 10.2918526731014 8.92820190496133 1.10435537606770 0.117292295601960
AT1G29720_at 7.32416797805874 6.88430334291679 6.30788784986224 5.73004477763242 6.25726844800618 5.77683783996642 8.41333596594363 7.9821339452981 9.40955208427263 9.12099156686665 8.41486271827485 9.08667325278738 7.64209679043459 8.49277409537456 8.09314477178189 8.02838308599995 7.25049773177886 8.12064263012032 8.99577444209278 0.183560792523286 0.181062980200451 0.18450423668287 0.187711964245305 0.182275602825900 0.185465648956700 0.181476029715696 0.185072608908892 0.183292680902002 0.182895314875503 0.175879396083644 0.175847601750906 0.179473789127764 0.180400488027679 0.174817620811632 0.175409214360808 0.204173259003176 0.182236377439661 0.18063222133157 1 1|0 -|/ 10393932 10394611 10394157.778 10393783 10395589 - gene protein_coding_gene FALSE TRUE AT1G29720.1 protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G29740.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.33364027951456 -10.2405596046460 6.38269810313981e-07 0.00977510214495862 10.2902649965338 15.4927843929504 -1.33364027951456 0.168151105848903
AT4G34600_at 1.99866501167442 2.48086403967402 4.16806802672749 4.17613659061106 4.34376961622844 3.88395522911216 3.69812006225833 4.02943327542845 2.60381997633444 3.77420985315869 4.62737264319283 3.57673578751817 4.69655199812871 4.83169885789221 3.41982930555156 4.70429744605527 5.261725369042 4.94519355715233 3.51393498835829 0.226283722721202 0.213624986989951 0.205863514452942 0.209437120912953 0.21298027975756 0.217622311283662 0.211020471983933 0.205256304062297 0.213427202993305 0.208238315449446 0.208265728452512 0.207166060038533 0.209860824819863 0.222393419110951 0.207118444034158 0.216620307581308 0.237254032344521 0.207502399397009 0.211691691574755 4 4|0 +|/ 16529286 16529939 16529561.8 16529230 16530191 + gene protein_coding_gene FALSE TRUE AT4G34600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16385.1) 1.15090789151357 10.2276812548624 6.46299986934395e-07 0.00989743799991333 10.2828628956054 7.50000009472285 1.15090789151357 0.128780895177583
AT2G15960_at 11.3348177829688 11.5320699447031 11.1476243082807 11.2503147399813 12.0145485021595 11.9042039804039 10.0876368250616 10.1570815183671 10.5012797669997 10.2822571908970 11.8251010695022 11.4273118203107 11.5158691910586 11.6404908055953 11.1952610049554 11.1105586907231 11.1399176364554 11.1607555005333 10.5246606245527 0.110166320024899 0.110873029967129 0.112042686800858 0.115934514163728 0.112636366209677 0.114426225441656 0.115986642454586 0.119108396875824 0.128404059078773 0.116626906774528 0.11031401108583 0.109029646452598 0.112005859269732 0.121238378148825 0.11088455079576 0.109029646452598 0.116820582947981 0.112736233778470 0.112618559101671 2 2 + 6954443 6954644 6954561.636 6954391 6954770 + gene protein_coding_gene FALSE TRUE AT2G15960.1 unknown protein 0.871056859503258 10.1965728243484 6.66152444101592e-07 0.0102007923765277 10.2649197715792 22.0850242380949 0.871056859503258 0.0446105986999905
AT3G19450_at 8.5443390661404 8.8530338358097 8.0289422295743 8.16049339828148 7.74033187983999 7.60697685200685 9.729974679051 9.6958167544146 9.19244501061383 9.50994949707326 8.50267496033538 9.26538433289185 8.77174211413147 9.33303966725477 8.78540547088851 9.1143200343827 8.51220194125762 8.69842067765824 9.42729685358702 0.176975740758154 0.158815965573111 0.169720179548433 0.173972460196597 0.162781617062763 0.171232788071868 0.164992617101406 0.163919309842619 0.177925257082366 0.160012055806354 0.162497411979037 0.157317141183918 0.167256330366866 0.156449071998121 0.164831432273410 0.156655010507473 0.165775606499801 0.165813759212245 0.159274976875912 3 3|0 +|/ 6746327 6746981 6746593.6 6744604 6747220 + gene protein_coding_gene FALSE TRUE AT3G19450.1 CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. Identical to Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) (CAD) [Arabidopsis Thaliana] (GB:P48523); similar to CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34230.1); similar to cinnamyl alcohol dehydrogenase [Ocimum basilicum] (GB:AAX83108.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.912635065584791 -10.1944447800583 6.67534432713907e-07 0.0102212872337153 10.2636890702735 17.6697198053605 -0.912635065584791 0.0627662605061266
AT1G15670_at 8.96764227555465 9.39937042629954 8.54637098753747 9.3899029947224 10.01450774574 9.97908130954444 4.05092999057385 4.05512381230989 6.50941440208552 4.30354609440868 4.91984619047978 4.82249737713688 4.90469302585756 5.6241634052904 3.82613443158814 6.18477569494302 5.15457286871127 4.85383414379975 5.04118365206054 0.351528197630292 0.351617424576457 0.359545835715835 0.344296743562295 0.346932118369189 0.350001037456718 0.338012135722419 0.326781937661271 0.325623887042414 0.33168129767496 0.325623887042414 0.329985068708557 0.333397914384013 0.325623887042414 0.337579122610282 0.325623887042414 0.338661090508478 0.325623887042414 0.325623887042414 1 1 + 5390602 5391155 5390827.091 5389947 5391485 + gene protein_coding_gene FALSE TRUE AT1G15670.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G80440.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); similar to Os06g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057979.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 1.30789952962127 10.1926185635831 6.68722885421187e-07 0.0102388160986838 10.2626325899797 13.2108808719907 1.30789952962127 0.164101822540386
AT2G43200_at 4.56162264984808 5.00427540403507 3.37681729993146 3.47602426854061 4.23033112223463 4.09076882752766 5.32704748832903 4.90033452557625 5.21545669698627 5.2013622017163 4.92952213602437 4.39668229273249 5.14413165999976 4.39758067317129 4.43216072011632 4.45468078083557 4.19836284831898 4.1190281409834 6.06572550589157 0.223138228542218 0.227322884454024 0.223661891240149 0.228364469047916 0.220038104886858 0.234759942006159 0.220741860082854 0.23052913826546 0.229698002009028 0.233933128149274 0.220038104886858 0.223616726453381 0.232378989312056 0.222393808348457 0.223161857196624 0.221653584085155 0.233912114178722 0.241362479927275 0.231377255024196 2 2 + 17966869 17967478 17967101.545 17965307 17967613 + gene protein_coding_gene FALSE TRUE AT2G43200.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Os10g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065036.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Os06g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056546.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.06999872453190 -10.1786502715659 6.77889244337987e-07 0.0103784843308146 10.2545416234695 9.37250276061326 -1.06999872453190 0.110449699926187
AT1G56050_at 6.38651568760922 6.77414131476755 4.75325266689146 5.24036618281729 5.17619193633189 5.18622390055377 8.74011973659523 8.53137097986769 6.04576452660255 7.17383615915737 6.26301298027425 7.96711141419771 6.5861817360613 6.65669646122199 8.5881057275866 6.20192870128038 6.86541844718435 6.17296382626695 6.45668128585176 0.218352645209666 0.216730362946226 0.220012536557960 0.220372244821507 0.214690007644096 0.224576914604412 0.219418678578796 0.220198270162587 0.220451848157823 0.220473724412033 0.214227209267390 0.214086807829132 0.214759390604331 0.214086807829132 0.217234218231553 0.214086807829132 0.232715848279284 0.214480400077737 0.214086807829132 1 1|0 +|/ 20968749 20969813 20969091.9 20967384 20970006 + gene protein_coding_gene FALSE TRUE AT1G56050.1 GTP-binding protein-related similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G30580.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK09228.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Protein of unknown function DUF933; (InterPro:IPR013029); contains InterPro domain Conserved hypothetical protein 92; (InterPro:IPR004396); contains InterPro domain TGS-like; (InterPro:IPR012676) -1.08255575175301 -10.1778230454939 6.7843634395682e-07 0.0103861819896349 10.2540618961081 13.0842418351608 -1.08255575175301 0.113639068065243
AFFX-Athal-Actin_5_r_at 2.72578078958547 3.07811621291033 3.42079918047185 3.73366418062966 4.18125943862956 3.66000528710362 2.88806421328075 3.31980336708072 2.51386158553211 2.12105711102601 3.81301688504819 4.11450203494665 4.31995503388581 3.73741416843380 3.57813037617806 3.55485770375218 3.41945715485618 4.04913794497342 1.83921192348363 0.233626273286547 0.221966232725865 0.23389830026539 0.226194677899921 0.223201250182744 0.223512792691251 0.227410892256299 0.220604430094746 0.234869692113587 0.239879391640815 0.220194554819031 0.220785052715758 0.227128457291137 0.228860885294911 0.221879327366065 0.220066692231077 0.250751305451326 0.230200131797921 0.246276645738626 NA NA NA NA NA FALSE FALSE 1.20562812436986 10.1699233839066 6.83685073390771e-07 0.0104658511034659 10.2494775058935 6.3666128100981 1.20562812436986 0.142718103211733
AT1G12220_at 4.74397393622233 4.40912247087260 3.5486171385711 3.22516455193413 3.68986406154906 3.71239055435566 3.54636709791749 3.61282006313113 3.96654995146323 3.59745234244995 2.56980734642858 2.44418263690309 2.69584110256587 2.21227968587372 2.15136859971523 2.0664100546651 2.91991119924849 2.37110126178466 3.90587794162043 0.241733265867325 0.248403112143182 0.250181340411656 0.245258720948098 0.242950962751820 0.256355785990578 0.247702945357059 0.251782654015966 0.259023523759607 0.242354519601672 0.246573354896947 0.261435026733294 0.262267786743158 0.244053694616368 0.245292425735244 0.24048192460164 0.253525810228093 0.251134657360971 0.249269346852679 1 1 + 4147117 4147640 4147338.818 4144933 4147815 + gene protein_coding_gene FALSE TRUE AT1G12220.1 RPS5 (RESISTANT TO P. SYRINGAE 5) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. Identical to Disease resistance protein RPS5 (Resistance to Pseudomonas syringae protein 5) (pNd3/pNd10) (RPS5) [Arabidopsis Thaliana] (GB:O64973;GB:O81402;GB:O82098;GB:O82100); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12290.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12280.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62353.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62352.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.964246245689922 -10.1603834294804 6.90082359549462e-07 0.0105630906776236 10.2439334888877 6.9371180581905 -0.964246245689922 0.0814774216200335
AT3G17609_at 4.63160425649162 4.49311922673868 4.68391950123489 4.39500267385476 2.43161542182577 2.25176481450262 6.06203101369242 5.21918300494292 3.92143349538303 3.98424565722924 2.71003314665624 3.50063088791633 3.26719209947413 3.03757289371299 2.92012499452154 4.45875640360301 3.77168157530796 2.84105782882652 4.72379526877736 0.221954354117078 0.223329503055933 0.227613903544001 0.223754256317939 0.223645522999724 0.226376907321750 0.233128150558408 0.230098035790780 0.234802469771367 0.228149288938042 0.225429286120614 0.221444768919030 0.224575820669024 0.219483864345501 0.226595690657309 0.219483864345501 0.222330415676989 0.224780373332901 0.223646850475728 3 3|0 +|/ 6023996 6024548 6024297.5 6023872 6024704 + gene protein_coding_gene FALSE TRUE AT3G17609.1|AT3G17609.2|AT3G17609.3|AT3G17609.4 HYH (HY5-HOMOLOG); DNA binding / transcription factor|HYH (HY5-HOMOLOG) Identical to Transcription factor HY5-like (HY5 homolog) (HYH) [Arabidopsis Thaliana] (GB:Q8W191;GB:Q8LB41;GB:Q9LUN6); similar to HY5 (ELONGATED HYPOCOTYL 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11260.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE88841.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -1.27867617549472 -10.1491512497495 6.97697642297374e-07 0.0106789601130036 10.23739521313 8.03263300710157 -1.27867617549472 0.159115274474418
AT2G40080_at 8.05661040813319 8.36659980077331 6.63566433146051 6.80843345904854 7.8621723479618 7.12886465219242 3.96543771320908 3.84952155217514 4.3266832039482 4.08720930053584 5.73587386448 5.92844684664635 4.79254586189247 5.3339049400548 5.86427342038145 5.00392530467322 5.13981747904478 5.50882754372894 3.7665859952168 0.345315314616883 0.360910469231051 0.324019995699369 0.324932562501851 0.358011263339466 0.331936241338156 0.327916912462825 0.329234663428255 0.332926133230972 0.326945053790573 0.317205124543101 0.317205124543101 0.319880402931635 0.317471947205859 0.317818405937506 0.317205124543101 0.317205124543101 0.317205124543101 0.336621239781421 2 2 - 16741624 16741927 16741765.909 16741372 16741990 - gene protein_coding_gene FALSE TRUE AT2G40080.1 ELF4 (EARLY FLOWERING 4) involved in photoperiod perception and circadian regulation. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G29950.1); similar to Protein of unknown function DUF1313 [Medicago truncatula] (GB:ABE91668.1); contains InterPro domain Protein of unknown function DUF1313; (InterPro:IPR009741) 1.20126686840280 10.1451023287610 7.00465041240434e-07 0.0107206174561848 10.2350354475039 11.3209687368758 1.20126686840280 0.142401942438090
AT1G13950_at 5.48164681981975 5.43119427319224 5.87798124000418 5.92622187621679 5.23323810706559 5.22824932217332 3.77342123174246 3.81961343091107 2.95385828412805 2.94945735028784 3.88382647755049 3.16098655555945 3.40954172069638 3.70296080394237 4.40901078367473 3.78471530684096 3.73596515740291 4.35275595284076 3.38115992193407 0.215045786808036 0.221257276617723 0.222473198432916 0.214494184326626 0.209687578166029 0.229386408522016 0.209750023591543 0.20911440473069 0.227608495172307 0.220633989543555 0.209568566259748 0.213663822925356 0.216067308610516 0.213783264569587 0.214524576769172 0.209208046348681 0.222732348759847 0.209704819482715 0.214161865785213 1 1|0 +|/ 4773630 4774635 4774038.889 4773573 4774864 + gene protein_coding_gene FALSE TRUE AT1G13950.1 EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor Encodes eukaryotic translation initiation factor 5A (EIF-5A). Identical to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1) [Arabidopsis Thaliana] (GB:Q9XI91;GB:Q9LMG2); similar to eukaryotic translation initiation factor 5A, putative / eIF-5A, putative [Arabidopsis thaliana] (TAIR:AT1G69410.1); similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (GB:Q945F4); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Eukaryotic initiation factor 5A hypusine (eIF-5A); (InterPro:IPR001884); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) 0.825049428406054 10.1223514200796 7.16237818951211e-07 0.0109613035812293 10.2217474654332 8.54634355277242 0.825049428406054 0.0145110496103153
AT3G47420_at 7.1408833842 8.01684151090985 8.1229468126092 8.24386389202001 7.41293151225282 6.5428070252691 9.4608615347083 9.74587328168567 8.38956811069946 8.94934340809372 5.73652180234812 6.222231381162 7.19920704527587 6.4432549245487 4.99329867082135 8.4486689066167 7.84824897555037 6.19434122264265 9.02433529184528 0.246906932409562 0.237572392769675 0.25029407090915 0.239940428755188 0.246469330517218 0.249685341830070 0.250862082946358 0.251119196247770 0.254698063462248 0.240848653975144 0.241083530387436 0.242245841328327 0.240672970202263 0.246539560043751 0.245150348933774 0.242572767552534 0.253582916700501 0.237572392769675 0.237609486501957 3 3 - 17483577 17483951 17483794.909 17483327 17486243 - gene protein_coding_gene FALSE TRUE AT3G47420.1 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative similar to transporter, putative [Arabidopsis thaliana] (TAIR:AT4G25220.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); similar to Os04g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053515.1); similar to putative glycerol 3-phosphate permease [Zea mays] (GB:AAS82603.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -1.58125246904847 -10.1221294322032 7.16393601262673e-07 0.0109629712801227 10.2216175720424 15.7976113957070 -1.58125246904847 0.220281110848832
AT4G14580_at 4.08401826954868 3.98579861973104 5.05988748026379 5.27894537688252 5.48960122325575 5.44527982859651 4.05557584986731 4.17286430795958 4.73176137552377 5.03434733020828 6.36123633774302 4.71736841762191 5.60398600643818 5.89415720320764 4.44646251117148 5.43624471272203 5.99536681399536 5.37926893676208 5.19863365635007 0.238686379366526 0.225731198771465 0.234692940385305 0.2308032509027 0.238718809326241 0.238291707796853 0.240075270558404 0.225731198771465 0.234994012118134 0.234667203395088 0.229354973639925 0.230466441215421 0.229031151689882 0.233690848745928 0.227431500066642 0.225731198771465 0.231684554405086 0.236995649124436 0.227005108277120 4 4 - 8367925 8368413 8368199.364 8367883 8369163 - gene protein_coding_gene FALSE TRUE AT4G14580.1 CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:ABJ91213.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.867439064451663 10.1017666995497 7.30840642934261e-07 0.0111833235181801 10.2096829392318 9.93025078025569 0.867439064451663 0.0468701649238726
AT3G14700_at 2.65097707559653 2.99150685253361 4.54519672044198 4.25463497997685 3.83394882790914 3.69643326840476 2.59768945298315 2.54729391116554 1.8423584587695 2.24445780766183 2.43922631106254 2.12392032510676 2.72325124237623 2.68367968974048 2.37206410758939 2.72797510046045 3.15724939484468 2.23679049656369 1.99615824765024 0.262815080305322 0.259774690311446 0.271014345953229 0.283533577564419 0.285983036700303 0.276446634277611 0.259467709394145 0.261336254554962 0.264855261251142 0.262689302358728 0.259986249393763 0.26337763212915 0.260300032646149 0.266248869347984 0.264180910857752 0.258268092157107 0.264808420700566 0.26266206080058 0.258880501315908 3 3 + 4940795 4941304 4941057.727 4940325 4941405 + gene protein_coding_gene FALSE TRUE AT3G14700.1 similar to SART-1 family protein [Arabidopsis thaliana] (TAIR:AT5G16780.1); similar to SART-1 protein [Medicago truncatula] (GB:ABE84261.1); similar to SART-1 protein [Medicago truncatula] (GB:ABE88274.1); similar to Os02g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046936.1); contains InterPro domain SART-1 protein; (InterPro:IPR005011) 0.95802401911049 10.0937927203256 7.36583769749682e-07 0.0112704682609399 10.2049987719690 5.68254901354072 0.95802401911049 0.0815079922917535
AT1G02870_at 6.37140739723357 6.28738861817937 4.95080240552386 5.15575525404889 5.44569462455904 5.48715262799258 5.66930788738325 6.19341859806983 5.06854450143065 4.91340979132584 3.97960799352051 4.04652697471168 3.65326404684477 3.66615372770506 4.38754559344148 3.79346667077224 3.56388004172196 4.03577350911196 5.17992261151502 0.227052186419164 0.232533225892005 0.246135738778465 0.233371273563731 0.238460758427356 0.257256594389111 0.240256646226935 0.235579037547811 0.238770864390235 0.225207239506492 0.227192816630321 0.225207239506492 0.228274854592346 0.245618746893399 0.225207239506492 0.230444916257121 0.237868676307583 0.227690880860154 0.232355898563050 1 1 - 637458 638548 638238.727 637214 638677 - gene protein_coding_gene FALSE TRUE AT1G02870.1 similar to hypothetical protein MtrDRAFT_AC161032g9v1 [Medicago truncatula] (GB:ABE85046.1) -1.01685552277360 -10.0934883652978 7.3680394264392e-07 0.0112731003224520 10.2048198657666 10.1674840705334 -1.01685552277360 0.098728501447517
AT2G24850_at 5.91034034496877 6.87193084788066 10.6027372043917 10.6820032702858 3.16663182157586 3.05257340988546 1.31703155568175 1.16520204066142 2.39712948877752 1.95769438799673 1.48341213498408 1.81858008992984 1.73736185128643 1.56753216769976 1.53970720745643 2.45865577342258 1.36484573882830 1.9941315205964 2.12180602318476 0.365667490762471 0.354313533728956 0.337118016517078 0.33575626162955 0.327086292253861 0.329390209459238 0.326950073036384 0.322726301394858 0.340936296529345 0.322726301394858 0.322726301394858 0.322726301394858 0.325693296657078 0.322726301394858 0.324989526606651 0.323739915252957 0.333410107613046 0.332072469432877 0.322726301394858 2 2|0 -|/ 10590152 10591171 10590603.444 10589909 10592295 - gene protein_coding_gene FALSE TRUE AT2G24850.1 TAT3 (TYROSINE AMINOTRANSFERASE 3); transaminase Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid. similar to SUR1 (SUPERROOT 1), transaminase [Arabidopsis thaliana] (TAIR:AT2G20610.1); similar to Os11g0552000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068082.1); similar to Os06g0345200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057579.1); similar to tyrosine aminotransferase [Glycine max] (GB:AAY21813.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 1.32325595322119 10.0862355585622 7.42071825723877e-07 0.0113529568617496 10.2005539363631 7.29825878383901 1.32325595322119 0.170175389496849
AT1G20630_at 10.5295775687133 10.5525037438399 10.9311301197091 11.0488668681066 10.8143811359576 10.7190317058128 9.68697018543868 9.56437478678602 8.9174461583741 8.42747827768373 9.59016955607442 8.68178261783166 8.93363990938015 9.33640976661125 9.09253128685622 8.5988024001682 9.51441091996764 9.98201034788892 7.63608299614461 0.134458973953082 0.129611680123183 0.134724789830882 0.129764144537311 0.134594046652658 0.129480792734305 0.132202022154903 0.128736752777629 0.13749744221928 0.146082870920686 0.129967754649438 0.131597979042101 0.135675579788695 0.137527841341648 0.143583134659242 0.135246312388314 0.137318840937804 0.130592003224971 0.155445785950484 1 1|0 +|/ 7148737 7149567 7148994.3 7146626 7149967 + gene protein_coding_gene FALSE TRUE AT1G20630.1 CAT1 (CATALASE 1); catalase Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2. Identical to Catalase-1 (EC 1.11.1.6) (CAT1) [Arabidopsis Thaliana] (GB:Q96528;GB:O22529;GB:Q9LDS9); similar to CAT2 (CATALASE 2), catalase [Arabidopsis thaliana] (TAIR:AT4G35090.1); similar to CAT3 (CATALASE 3), catalase [Arabidopsis thaliana] (TAIR:AT1G20620.1); similar to catalase [Raphanus sativus] (GB:AAF71742.1); similar to catalase [Prunus persica] (GB:CAD42908.1); similar to catalase [Brassica juncea] (GB:AAD17934.1); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226) 0.84210650469927 10.0722646548320 7.52334548091229e-07 0.0115092139166996 10.1923226110562 19.2524655532946 0.84210650469927 0.0339596120349353
AT1G28230_at 8.79760986369154 8.99684112118747 9.48890296788105 9.23640204705824 9.4520269194377 9.02411771712234 8.69104044304447 8.5812137450632 5.91969623142437 7.85261509738018 8.00013338151216 8.08242921046216 8.76548698889482 8.42695217055312 8.0281351169555 8.96067704761412 8.9440739959443 8.52597789869786 7.23161803706857 0.159082814650043 0.153833572169733 0.153453546936067 0.156435111695307 0.158174485207719 0.155609541100013 0.155696006554956 0.161596907684831 0.203983976544921 0.164017836231628 0.167478279641035 0.159166100627741 0.16290175268753 0.162529856182575 0.157879858290371 0.153453546936067 0.159187337298397 0.161476223289430 0.175187898518698 1 1 - 9862199 9863960 9862875.273 9862060 9864593 - gene protein_coding_gene FALSE TRUE AT1G28230.1 PUP1 (PURINE PERMEASE 1); purine transporter Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. similar to ATPUP2 (Arabidopsis thaliana purine permease 2) [Arabidopsis thaliana] (TAIR:AT2G33750.2); similar to Os09g0467300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063424.1); similar to Os09g0467400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063425.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD19737.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.999554778666525 10.0695196604277 7.54368972089237e-07 0.0115395821660491 10.1907031604844 16.7675408605376 0.999554778666525 0.0945673670942225
AT4G28250_at 2.89113364580953 2.91186315196265 2.29369280329632 2.3986942865152 2.46669516400625 2.78585934159821 3.60630040278062 4.28357100491491 2.63775350050913 3.34857352368418 5.62635288866698 7.70648451804748 5.92114211618279 6.81854608521787 7.56456239032663 6.012665088981 5.07151542292599 6.44146168222486 3.53890927262552 0.269169681011089 0.262823717385519 0.269742858928091 0.274600242642771 0.266961354234914 0.274014773452764 0.267036307136979 0.263360277197145 0.290999203549216 0.262823717385519 0.262823717385519 0.27075703241922 0.270249365365696 0.273177466343556 0.264202941058756 0.271073266760455 0.280004843368772 0.267499742534552 0.265049421259665 4 4|0 -|/ 14000479 14001544 14001063.889 14000044 14002075 - gene protein_coding_gene FALSE TRUE AT4G28250.1|AT4G28250.2 ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) putative beta-expansin/allergen protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-B3 precursor (AtEXPB3) (At-EXPB3) (Beta-expansin-3) (Ath- ExpBeta-1.6) (EXPB3) [Arabidopsis Thaliana] (GB:Q9M0I2); similar to ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) [Arabidopsis thaliana] (TAIR:AT2G20750.1); similar to Expansin-B17 precursor (OsEXPB17) (Beta-expansin-17) (OsaEXPb1.13) (GB:Q7X6J9); similar to Os02g0639500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047539.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) 1.14164042797625 10.0658369626567 7.57107729141103e-07 0.0115807198249423 10.1885293795558 7.73993624494945 1.14164042797625 0.130884282580144
AT1G66350_at 5.1963663996926 5.52870520053486 2.820916962015 2.84835069316236 3.18384071395992 3.29258365049755 4.01786408476370 4.04309013193391 5.19871074363356 4.11258502541112 4.90276775254913 5.7439313297281 4.70969378652786 4.65573635383232 5.26649825734463 4.87669261495124 3.53316052890717 5.06876943766332 5.6183293713629 0.240874035999138 0.240874035999138 0.251526706406890 0.242993923617106 0.248465727120892 0.244893170221103 0.248374602685732 0.240874035999138 0.263367704958690 0.252106627977528 0.247625950230079 0.240874035999138 0.246154421373446 0.255537840546394 0.247204476347824 0.240874035999138 0.240874035999138 0.240874035999138 0.240982320001996 1 1 + 24753004 24753490 24753235.273 24751858 24753705 + gene protein_coding_gene FALSE TRUE AT1G66350.1 RGL1 (RGA-LIKE 1); transcription factor Negative regulator of GA responses, member of GRAS family of transcription factors. Also belongs to the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. Identical to DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein) (RGL1) [Arabidopsis Thaliana] (GB:Q9C8Y3;GB:O65367); similar to RGL2 (RGA-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G03450.1); similar to DELLA protein [Malus x domestica] (GB:AAY56750.1); similar to GIA/RGA-like (GB:AAY28970.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.89598445255189 -10.0631022061729 7.59148485972828e-07 0.0116111760929544 10.1869143091158 8.77706371514857 -0.89598445255189 0.0608559877973732
AT1G75900_at 9.59618311581252 9.85332670141111 10.4235076925041 10.4731655829026 11.3469414304684 11.0528740352353 10.6493678896884 10.5417486702298 9.95529293755616 9.89408435680973 11.3472032906866 10.9350936693189 10.9989924281915 11.3502451834149 10.8288864758659 10.0999842833849 10.5398140043323 11.1355464206909 9.32644262320248 0.0864243290152494 0.0858215358839113 0.0882463609593007 0.085202450275373 0.0846661758539058 0.0884552474563177 0.085471344652462 0.0844914931825499 0.0951399210571223 0.0881466538321895 0.0845183932221152 0.0844914931825499 0.0844914931825499 0.0866383508688228 0.0849142326829541 0.085448605826885 0.086061328975262 0.0865774734702774 0.0900353623038229 1 1 + 28503795 28504498 28504127.091 28502721 28504799 + gene protein_coding_gene FALSE TRUE AT1G75900.1 family II extracellular lipase 3 (EXL3) similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain 5' (InterPro:IPR006179); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) 0.921581502310894 10.0548451277986 7.65346395987413e-07 0.0117052077802315 10.182033616802 20.8070114024525 0.921581502310894 0.0706449451710742
AT4G20780_at 5.59855456120757 5.91002658696503 4.96174220310955 5.05515787634124 6.31648661497236 6.49040565694675 4.14053678609855 4.39508442288246 4.80175971871425 3.39278669201626 6.22818785835311 6.54268854477679 4.96029001347732 6.30170283825272 4.38286096927991 4.78610516079039 3.62804519424917 4.72685017483253 3.82759829585791 0.272267929660217 0.253600759975541 0.257978568552853 0.254678856897469 0.25657022481989 0.257851488509807 0.255944064421649 0.253053469295943 0.258862865476476 0.257865190824647 0.251900105513077 0.252411473598527 0.253607942577353 0.273216687560758 0.260939756253327 0.251900105513077 0.257984824916517 0.251900105513077 0.251900105513077 4 4 - 11133480 11133829 11133661.727 11133197 11133981 - gene protein_coding_gene FALSE TRUE AT4G20780.1 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G44460.1); similar to putative calmodulin-like protein [Populus x canadensis] (GB:CAG27612.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.941053636971381 10.0450600974098 7.72762252798078e-07 0.0118178531320410 10.1762414025169 9.95948579512259 0.941053636971381 0.0775438702943294
AT4G32870_at 7.63710266022425 8.18195436261261 6.42431770649658 6.69616303446707 4.70039366791782 4.57323797178053 6.79065122858729 8.19953906142875 6.23841992302147 5.97246271334823 4.23418901996465 4.48958561565045 4.59402865600497 4.69675689135263 3.68514569991064 4.14231011249947 4.52739747347511 4.84100428491004 5.54779409105696 0.216803967215891 0.219937176234939 0.222848126029913 0.230068650900996 0.217791639288435 0.223148750360077 0.2232227297351 0.223307209162391 0.223726221380216 0.215801493032721 0.215801493032721 0.217596884565971 0.219870299309433 0.220782052328859 0.215801493032721 0.217418466802645 0.222885043929558 0.222031166916916 0.215801493032721 4 4 + 15862217 15862586 15862392.364 15862147 15862745 + gene protein_coding_gene FALSE TRUE AT4G32870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25770.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78384.1); contains domain Bet v1-like (SSF55961); contains domain no description (G3D.3.30.530.20) -1.81102021148447 -10.0182436195940 7.93487668389616e-07 0.012134013425014 10.1603208690842 11.8108505258710 -1.81102021148447 0.266520855480974
AT2G32150_at 9.58683804267421 9.64954562185028 11.3124124393446 11.3157090457200 11.3342136523928 11.1875851971476 10.6009687122555 10.4182876438315 10.5967403890327 10.6448456733225 11.1344381807587 10.8145846707054 11.2991588330242 11.2614459020170 10.5334075419705 11.3160153411556 11.2287173875994 11.0190176069672 10.5515218751677 0.0732349769773243 0.0671091083994609 0.0651489868028816 0.0646411694304498 0.0645681764133223 0.0672504789984955 0.0676646464777041 0.066995893105869 0.0738625950054934 0.0659891728374108 0.0643841499245364 0.0637012980212093 0.0657672868821022 0.0658793773084363 0.0645695868099879 0.0638928320746494 0.0671131341265959 0.0673788323431117 0.0651368751331753 2 2|0 +|/ 13666826 13667584 13667281.889 13666083 13667841 + gene protein_coding_gene FALSE TRUE AT2G32150.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G02230.2); similar to putative phosphatase [Phaseolus vulgaris] (GB:CAD57681.1); similar to putative hydrolase [Glycine max] (GB:AAM94615.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Pyrimidine 5-nucleotidase; (InterPro:IPR010237); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) 0.850857807841081 10.0179978614459 7.93680366589856e-07 0.0121361664855255 10.1601746496777 21.5124704588349 0.850857807841081 0.041969015251087
AT1G09750_at 8.9669262921884 9.15025166929694 3.22811985986025 4.0306538773448 6.66925654010166 6.74451643744697 7.08965629049655 7.56062644061062 8.65018466049115 7.98490602583974 9.50719876133445 9.98090397564961 8.34002339558564 8.33689618934431 10.2971434815601 8.01457969459972 6.5555969219178 9.15010053681756 8.33517797669384 0.188188097394405 0.187986954451685 0.233473239444661 0.232891109067043 0.192368654737872 0.203855056208049 0.181803880729711 0.185045624383948 0.188011050849252 0.186413436755571 0.181803880729711 0.183960305423822 0.185883396381811 0.188497724530426 0.189099847495626 0.183210544689662 0.206156784424132 0.185416300622391 0.186912928142184 1 1 + 3158328 3158933 3158666.727 3157503 3159147 + gene protein_coding_gene FALSE TRUE AT1G09750.1 chloroplast nucleoid DNA-binding protein-related similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71208.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -1.28717300626674 -10.0112407798477 7.98998474847122e-07 0.0122166866804125 10.1561521134199 15.2281150545563 -1.28717300626674 0.164642753582110
AT4G23290_at 9.21634787674448 9.58463959126852 8.15031895423978 7.68024869653654 8.91990298083941 8.58765545446174 10.8673443604745 10.6321130058060 11.0097985671396 10.8573397401259 10.5569513080656 10.6165609413329 10.4171609501567 10.4550871190799 10.3473301440362 10.6690006192476 10.0812326402126 10.3545009439832 10.883554903563 0.173920591992598 0.156646352634270 0.180960582431364 0.184994352449072 0.162682824246744 0.167383847321276 0.161715435029799 0.162094753757126 0.172392099205834 0.164936152085346 0.171200313769202 0.156646352634270 0.159582527017207 0.166878398647293 0.168056146044897 0.158300372743750 0.177872019721663 0.175899505442588 0.162051449149406 4 4 - 12177957 12178458 12178130.375 12177748 12180836 - gene protein_coding_gene FALSE TRUE AT4G23290.1|AT4G23290.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11480.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.11012467036626 -10.0029671918198 8.05562748222822e-07 0.0123162488575787 10.1512208544932 19.8818842751500 -1.11012467036626 0.125070407217400
AT1G47890_at 2.83863970955341 2.78911979124772 5.22448470360234 5.30715837812755 2.86822465999891 2.75085062848368 0.725672593697552 1.30717244776355 1.28466284914576 1.78969948355145 1.94389298706361 1.12656945368654 1.17428875720084 1.16498094483429 1.61487750920826 1.17748370381404 1.26430156877703 1.52022257766712 1.25364751382272 0.276471886533458 0.285468051409709 0.325938814531021 0.321084179630387 0.296125731368129 0.283729584873548 0.276471886533458 0.288038657220058 0.286298561511236 0.276471886533458 0.29966105795773 0.284872324652805 0.282613958572436 0.279799446831106 0.276471886533458 0.276471886533458 0.307453398753708 0.284120920941441 0.279694729045694 1 1 + 17650127 17650499 17650300.7 17647645 17650704 + gene protein_coding_gene FALSE TRUE AT1G47890.1 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G45616.1); similar to verticillium wilt disease resistance protein [Lycopersicon esculentum] (GB:AAK58682.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 1.02659284796453 9.99823250604149 8.09345507441095e-07 0.0123732741177595 10.1483959236153 4.38441393237006 1.02659284796453 0.104006558746215
AT1G53160_at 6.87965476134522 6.27181695694806 7.52488326463735 7.78835603524152 8.98744093677544 8.43616963267647 9.4485926952210 9.40943794677327 9.78034501013008 10.0734109347449 7.65583159238767 6.05429328716722 7.08689635130672 7.21905199695854 5.8583633844567 7.19786603938656 7.9734054841595 6.44537201829691 8.78371158566319 0.244148401195792 0.239090332060378 0.247386210318892 0.232350785403471 0.235242627886461 0.244082477380638 0.238413235237679 0.237601314988895 0.237772178694492 0.235467080967301 0.235345246339427 0.236439380348048 0.240696270202116 0.239287358860434 0.245063666845268 0.230341383945976 0.241852747517628 0.244175598585773 0.232299977512981 1 1|0 +|/ 19810261 19810706 19810439 19810087 19811276 + gene protein_coding_gene FALSE TRUE AT1G53160.1|AT1G53160.2 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor|SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. Identical to Squamosa promoter-binding-like protein 4 (SPL4) [Arabidopsis Thaliana] (GB:Q9S7A9;GB:Q9SMX8); similar to SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G15270.1); similar to Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 (GB:1UL4); contains InterPro domain SBP; (InterPro:IPR004333) -1.2138003068268 -9.99075821313415 8.153562719316e-07 0.0124643513290184 10.1439320509786 16.3343977934245 -1.2138003068268 0.149300933407350
AT3G48500_at 4.76697017129237 5.21176422048447 4.21506238983529 4.52213595040245 4.07562111891348 4.16727047171120 5.22882062243123 4.86372132083899 4.12216122283802 4.83903030561986 2.94179237961079 3.34600442951536 2.96780852651289 2.80528573289183 3.97287635371623 3.60678549162994 3.83674978875624 3.14012513561027 5.08062214961912 0.232751875487294 0.221980460410788 0.2259134447316 0.225174352604882 0.231286687794684 0.228797560325264 0.228547229085663 0.221980460410788 0.227393246405821 0.221980460410788 0.233228601819365 0.226048820860998 0.2339001673896 0.239234569423783 0.221980460410788 0.228723696756512 0.221980460410788 0.235993550904825 0.223201725147467 3 3|0 +|/ 17975490 17976354 17976055 17973148 17976598 + gene protein_coding_gene FALSE TRUE AT3G48500.1|AT3G48500.2 PDE312/PTAC10 (PIGMENT DEFECTIVE 312); RNA binding|PDE312/PTAC10 (PIGMENT DEFECTIVE 312) similar to B1065G12.12 [Oryza sativa (japonica cultivar-group)] (GB:BAB90530.1); similar to CONSTANS interacting protein 5 [Lycopersicon esculentum] (GB:AAS67373.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029)|similar to B1065G12.12 [Oryza sativa (japonica cultivar-group)] (GB:BAB90530.1); similar to CONSTANS interacting protein 5 [Lycopersicon esculentum] (GB:AAS67373.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -1.06311134031236 -9.98228101077257 8.22232129884509e-07 0.0125686403374146 10.1388627323425 8.6353123028084 -1.06311134031236 0.113984188292698
AT2G30870_at 11.3650869307078 11.3615386174961 11.6882191502794 11.6817799401434 11.567389111937 11.3180319435656 10.4154926000943 10.3073902760925 9.99443940512994 10.3665231050302 11.1424128248746 11.4833817149090 10.9007305469911 11.1336560565121 11.1385236477414 11.1106371734282 10.8034068219363 11.0725489658118 9.89607121624987 0.112298435764721 0.108106032690058 0.118761416814524 0.114036225177668 0.111670624059811 0.118706553695518 0.108524302140506 0.114154992924060 0.118235160673457 0.115314530149650 0.114568533740612 0.106426995727162 0.108570319035072 0.113118432089477 0.107600858856677 0.10385316069346 0.110160298784897 0.105289926359430 0.118150616513404 2 2|0 +|/ 13148684 13149436 13149143.111 13148434 13149690 + gene protein_coding_gene FALSE TRUE AT2G30870.1 ATGSTF10 (EARLY DEHYDRATION-INDUCED 13); glutathione transferase early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases. Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002) Identical to Glutathione S-transferase ERD13 (EC 2.5.1.18) (GST class-phi) (ERD13) [Arabidopsis Thaliana] (GB:P42761); similar to ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G30860.1); similar to glutathione S-transferase [Pyrus communis] (GB:ABI79308.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.856981120302946 9.97577391852598 8.27552624281955e-07 0.0126491418621497 10.1349668508568 21.8050361352040 0.856981120302946 0.0470502386640965
AT1G75180_at 8.34179443084185 8.38692392698438 7.48208063432205 7.2634493023823 7.94868173818075 7.7703900358366 9.06421498313652 8.9402111010091 8.76503051580055 8.47996079245909 8.20008727188261 7.98243679943475 8.23691868105032 7.86335080227005 7.98820778350562 8.20618858174313 7.98981466195453 7.84913574612528 8.90127505706013 0.169703829183514 0.166440329943425 0.171216036171219 0.176068070556373 0.179956734946973 0.172439871532949 0.177651218808606 0.174727859901855 0.175665340579474 0.165864913260288 0.166177982032358 0.165346386888119 0.165991809662860 0.173427957917492 0.170304034372750 0.164546497769669 0.17285039335434 0.170515191033526 0.169591990078529 1 1 - 28219838 28221080 28220687.091 28219497 28222462 - gene protein_coding_gene FALSE TRUE AT1G75180.1|AT1G75180.2|AT1G75180.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65010.1); similar to Os03g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051432.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82722.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996) -0.871520131795005 -9.97473879939443 8.28402416146627e-07 0.0126613025283851 10.1343467365774 16.5271881004712 -0.871520131795005 0.0538979089755983
AT3G56400_at 11.6907990244044 11.9346096704678 12.7397432864554 12.5948814499862 11.5807646544382 11.2344090127443 10.1922778446792 10.0967987134921 10.4559030362905 9.07834827868771 10.8256868649736 10.5462636509650 10.2681542142856 10.8588151191217 9.65150743874562 10.5224759716179 10.4095519572965 11.3748423294258 9.67677639469188 0.0888961812758214 0.0894149609935947 0.0897448933321936 0.0905958865075164 0.0909241402075314 0.096542686297177 0.092490151083836 0.089670349610285 0.101619383562914 0.0984786116344823 0.0948234162811028 0.0888961812758214 0.0888961812758214 0.09119320449695 0.0942264874807705 0.0888961812758214 0.0921990812625358 0.094850995764267 0.0928156563915688 3 3 - 20920082 20920754 20920352.818 20919907 20921460 - gene protein_coding_gene FALSE TRUE AT3G56400.1 WRKY70 (WRKY DNA-binding protein 70); transcription factor member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. Identical to Probable WRKY transcription factor 70 (WRKY DNA-binding protein 70) (WRKY70) [Arabidopsis Thaliana] (GB:Q9LY00;GB:Q8LB71); similar to WRKY54 (WRKY DNA-binding protein 54), transcription factor [Arabidopsis thaliana] (TAIR:AT2G40750.1); similar to DNA-binding protein 3 [Nicotiana tabacum] (GB:AAF61863.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.939490622196208 9.97395453054586 8.2904689901562e-07 0.0126703237576557 10.1338768319509 21.6551211720138 0.939490622196208 0.0792104823098986
AT1G51610_at 8.85939331794371 8.7573328881712 8.17148456485409 7.73332966362359 8.65565078919857 8.45718238738472 7.07311028220303 7.0400798088776 5.95054820916016 6.07148420049514 7.45311343679949 7.87756186957938 7.37922565318558 7.63916326044697 7.53192959992887 7.00960808530796 7.40321435387672 7.20623907892703 5.5040174457468 0.203152043270035 0.203035687119195 0.200074017598820 0.214273807863004 0.203326914930363 0.197121752248341 0.204959327289401 0.205778070576417 0.209065829138061 0.219544874994545 0.204050908538672 0.201716040026313 0.197037954243404 0.207625977849484 0.197523549714403 0.201566337562823 0.202000161077202 0.211066142549818 0.218157543603521 1 1|0 +|/ 19142016 19143243 19142640.125 19140069 19143586 + gene protein_coding_gene FALSE TRUE AT1G51610.1 cation efflux family protein / metal tolerance protein, putative (MTPc4) Identical to Metal tolerance protein C4 (AtMTPc4) (MTPC4) [Arabidopsis Thaliana] (GB:Q8H1G3;GB:Q949W1;GB:Q9C531); similar to Membrane protein HUEL (cation efflux superfamily) (ISS) [Ostreococcus tauri] (GB:CAL50050.1); similar to Os04g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052402.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.958711537877744 9.97362465871402 8.29318137563331e-07 0.0126736397782428 10.1336791674009 14.733207230644 0.958711537877744 0.0852857150576193
AT3G10250_at 8.3369151615453 8.3991778354884 9.0935965611772 9.05129378380713 9.3694148788931 9.19562665308037 8.15491066094288 7.71191643253518 6.16292736894701 6.97598930975291 7.4594515919225 6.80223657472662 7.53928403106529 7.69855481612115 7.36089659979552 8.03726440995846 8.51792055099537 7.39868331749147 7.03712699388138 0.217260645008904 0.210854150264247 0.223528941690582 0.215734835539121 0.210854150264247 0.217727265166775 0.212206649882949 0.213344508971148 0.260935312530699 0.216627137726732 0.217380957752445 0.211542744371445 0.216802363411315 0.216350050277410 0.216479188676542 0.210854150264247 0.225121452479103 0.226600754446789 0.216664913440990 3 3 - 3168656 3169249 3169045.727 3167956 3170934 - gene protein_coding_gene FALSE TRUE AT3G10250.1|AT3G10250.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04090.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10374.1); similar to Os02g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045827.1); contains InterPro domain Conserved hypothetical protein 1589, plant; (InterPro:IPR006476) 0.951595771130308 9.96369870779379 8.37524909018795e-07 0.0127982181347162 10.1277264822961 15.8276736846187 0.951595771130308 0.0833743533332367
AT1G48000_at 3.65672278728599 3.8130769876115 5.28567670524541 5.72256515814209 5.22930738372543 4.91547844108287 1.78471926245504 2.49206483320034 1.82620665538508 1.64546565895161 1.38482715140836 1.77518336416031 1.61460363832523 1.72723975403011 1.60363117459496 1.66214341465225 1.98265396290654 2.11221412219589 1.33778538198231 0.269925722215606 0.270215714661741 0.274324970262717 0.290999058719241 0.274989330789966 0.283285910713254 0.268665835369834 0.267363755966522 0.269143720053445 0.273096751304257 0.26945802966924 0.279261748728308 0.267289068723106 0.270928696065928 0.267314797116994 0.273141759602724 0.265018878899959 0.267123073198153 0.268010856893567 1 1|0 -|/ 17708049 17709889 17708560.1 17707848 17710129 - gene protein_coding_gene FALSE TRUE AT1G48000.1 MYB112 (myb domain protein 112); DNA binding / transcription factor Encodes a putative transcription factor (MYB112). similar to MYB108 (BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G06490.1); similar to Cpm7 [Craterostigma planta (GB:AAB58314.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.24063523087764 9.95567696591797 8.44221537590807e-07 0.0128997050943875 10.1229088395348 5.78043376395552 1.24063523087764 0.156147149117435
AT3G07640_at 8.2617159755393 8.37152573168571 8.57821924557326 8.56098204856835 9.04882264911211 8.78467728238479 7.41972863410927 6.84238507610159 6.09267224305714 6.18920242708493 7.13195085737731 7.15870055687149 6.98222416675267 7.47831180893977 7.43796586384819 7.28093693292707 7.39458775540025 7.11291538471307 6.21507048336705 0.199154620008227 0.191069557909781 0.195748017010411 0.195805213038572 0.19766803250528 0.197624041853558 0.19452423642308 0.205958367497962 0.201028662560733 0.197895195339807 0.196198234367824 0.189642923970728 0.196153331879860 0.200864166372704 0.190651824640740 0.192888483625950 0.190782796568670 0.195221546234276 0.193156599404566 3 3 + 2438410 2439557 2439193.818 2438138 2439889 + gene protein_coding_gene FALSE TRUE AT3G07640.1 similar to Os02g0582400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047253.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73827.1) 1.05044361670067 9.9525089704571 8.46882161600184e-07 0.0129395125470892 10.1210045181853 14.9399308555627 1.05044361670067 0.111543586349394
AT1G20693_at 11.1696221124056 11.2670406937970 11.3407524039415 11.2973424366461 11.5737034971184 11.4011446355058 10.5067164544598 10.6607891929306 9.76857281159471 9.61198250576698 10.7739596428764 10.9615969400976 11.0831347192071 11.0432450776146 10.7575891844285 10.8809559019677 10.4731894631882 10.4315297914430 9.43505184451014 0.0803567402011713 0.0774844456543033 0.0805541727760304 0.0780219799473129 0.0785887220841772 0.0855909384476146 0.0785047139481433 0.0784357561073069 0.084028923076905 0.07945732434745 0.0780656382962885 0.0774844456543033 0.0774844456543033 0.0800796339072674 0.0779775128792869 0.077593121744331 0.0830466288908394 0.0800794529665331 0.0791019691751539 1 0|1 /|+ 7177409 7178112 7177632.125 7176765 7178810 + gene protein_coding_gene FALSE TRUE AT1G20693.1|AT1G20693.2|AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor|HMGB2 (HIGH MOBILITY GROUP B 2) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to HMG1/2-like protein (SB11 protein) (GB:P26585); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.848820666358489 9.94800742416041 8.50678389861332e-07 0.0129966644403014 10.1182969175374 21.3550651670473 0.848820666358489 0.0440830303618885
AT2G06925_at 6.98024210795568 7.62079418590883 5.08583690840873 5.34788276819966 7.03204318804737 6.27733756353081 2.56806624004411 3.15307054644018 6.12863499696295 5.02305121408266 8.46849287474434 8.83479304959412 6.89172001533943 7.93033026570614 8.72181707251173 6.4883610496255 4.94882242150341 7.5045220821673 5.01130135022123 0.245817756633497 0.246020976418909 0.248893669028322 0.255897850404687 0.243071248987845 0.259122796345792 0.264983700332277 0.257447887293426 0.251219838387581 0.255179853464963 0.243071248987845 0.250494739355618 0.243071248987845 0.260854351620967 0.243071248987845 0.243071248987845 0.261929117434865 0.243071248987845 0.251521016641349 2 2|0 -|/ 2842479 2843133 2842739.556 2842350 2843298 - gene protein_coding_gene FALSE TRUE AT2G06925.1 ATSPLA2-ALPHA/PLA2-ALPHA (PHOSPHOLIPASE A2-ALPHA); phospholipase A2 Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine. similar to phospholipase A2, putative [Arabidopsis thaliana] (TAIR:AT4G29470.1); similar to putative phospholipase A2 [Dianthus caryophyllus] (GB:AAC69277.2); contains InterPro domain Phospholipase A2; (InterPro:IPR001211) 1.47058833521808 9.94244084729116 8.55398276300695e-07 0.0130679194670457 10.1149460142542 11.9387941257276 1.47058833521808 0.204086088969032
AT4G11890_at 8.37834957212787 8.37893555283207 9.8616761276599 9.50182323798211 7.43985245255535 6.74446603296191 3.19000719492722 2.98012059570577 5.61287236138889 3.58541616353907 4.21241061210749 4.56303533226584 2.68386953802221 3.91476309537023 3.25085364442763 4.07675125538286 3.76181799788317 3.54052583290545 3.01074200141366 0.292073078157587 0.291936564153587 0.303595767079655 0.297370224672311 0.294465592331262 0.295655578370379 0.274417887018502 0.274417887018502 0.280273334307046 0.279400084303064 0.274417887018502 0.274417887018502 0.29571427686283 0.278411294265647 0.278598748007575 0.274417887018502 0.282095075809667 0.290319787013434 0.275473305671895 4 4|0 +|/ 7149019 7149693 7149410.2 7148240 7149915 + gene protein_coding_gene FALSE TRUE AT4G11890.1|AT4G11890.2|AT4G11890.3 protein kinase family protein similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.16796390266166 9.94226454658256 8.55548223720724e-07 0.0130693546655578 10.1148398378951 10.9694939736738 1.16796390266166 0.140282032519088
AT3G59900_at 1.18680343378117 1.70992031806638 1.94642495878703 1.70296689781762 1.66721879684943 1.25059017656142 1.39950068601644 1.17788519161402 2.00057740190457 1.86594695291411 3.67663593147996 3.08967004905799 3.65225399240367 3.74852264325235 3.68028285203219 5.51715697144255 4.37716643946576 4.02615058582562 2.14991315029187 0.27455047284014 0.276938113299213 0.276274084057827 0.277801769083024 0.275595928373955 0.27380840802557 0.287375686035781 0.274067884081714 0.274468540019195 0.279155410157342 0.290704853913068 0.275488554377678 0.283747798553295 0.282129457752901 0.285452781990376 0.301283779169131 0.28323904910162 0.284752862616845 0.27380840802557 3 3 + 22141116 22141384 22141226.545 22140703 22141441 + gene protein_coding_gene FALSE TRUE AT3G59900.1 (ARGOS); unknown protein Auxin-inducible gene ARGOS controls lateral organ size similar to ARL (ARGOS-LIKE) [Arabidopsis thaliana] (TAIR:AT2G44080.1); similar to hypothetical protein LOC_Os12g10750 [Oryza sativa (japonica cultivar-group)] (GB:ABA96704.1); similar to Os11g0247000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067611.1); similar to Os04g0444300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052892.1) 1.1193867824421 9.93963001736118 8.57792339254466e-07 0.0131027779821120 10.1132528458914 4.49339335818179 1.1193867824421 0.128994340070762
AT3G22160_at 5.8329189579861 6.03915800408617 7.51272395302061 7.74939829750882 5.22223487867541 6.289125288519 3.40602503407345 3.62792927627227 3.72079777457196 3.28383811289953 3.85503686232679 3.47583539512572 4.11620538110935 4.19416627712344 3.99980270004857 4.20050094011923 6.04100766747772 4.04040033257886 3.03273006126251 0.3143100645553 0.315445240852744 0.33846019264377 0.339645909721179 0.321530918266701 0.320720002879566 0.312684938683578 0.312684938683578 0.319601204141762 0.315299013745803 0.312684938683578 0.315645747273693 0.312684938683578 0.312684938683578 0.318551301473435 0.312684938683578 0.312684938683578 0.313017063852789 0.316066127966417 3 3 - 7818221 7818703 7818452 7817864 7818992 - gene protein_coding_gene FALSE TRUE AT3G22160.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT4G15120.1); similar to Os02g0173200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046037.1); similar to VQ [Medicago truncatula] (GB:ABE94086.1); similar to Os06g0666400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058308.1); contains InterPro domain VQ; (InterPro:IPR008889) 1.43072179061859 9.93836430988593 8.5887274605742e-07 0.0131184223232810 10.1124901683295 9.50301825830108 1.43072179061859 0.196250850457076
AT1G09420_at 3.3093917142944 2.93681549955563 4.57444001431822 4.5379827491799 4.28241222351282 3.74224415189931 2.31246970802089 2.2529173557744 2.32747484277171 2.4653953305056 2.51865847252129 3.03499556029175 3.22160378339717 2.96030696610663 2.79804337780159 3.19208798035006 3.34096874520667 2.71131889189877 2.52048437750229 0.200855108591709 0.197428714516915 0.207479274994300 0.202568959203201 0.205231789444083 0.19830292804711 0.199584724119138 0.205093585151082 0.199079569660888 0.202061620442952 0.200714791789174 0.197428714516915 0.201066871889055 0.204181079533329 0.202818610522159 0.197428714516915 0.206153750281341 0.197428714516915 0.200314013499346 1 1 - 3038645 3039375 3039024.364 3038464 3041821 - gene protein_coding_gene FALSE TRUE AT1G09420.1 G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4); glucose-6-phosphate 1-dehydrogenase Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. Identical to Glucose-6-phosphate 1-dehydrogenase 4, chloroplast precursor (EC 1.1.1.49) (G6PD4) (G6PDH4) [Arabidopsis Thaliana] (GB:Q93ZW0;GB:O80525); similar to G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G13110.1); similar to Os03g0318500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049944.1); similar to Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (G6PD) (GB:O24357); contains InterPro domain Glucose-6-phosphate dehydrogenase; (InterPro:IPR001282) 1.05791716862655 9.92562612336539 8.6982845672314e-07 0.0132848900195325 10.104805885631 6.19860058829775 1.05791716862655 0.114199059309563
AT3G28840_at 1.29833080484353 1.12452153665799 1.08676713240195 0.825779887549465 0.614205358395065 0.813218872566554 2.97903619517616 3.40178138119247 1.48313036041325 2.22830694908224 1.06187177021120 0.670112414705115 0.815088289606773 0.582058050192747 1.34056542612333 0.826277441385673 1.34066375725360 1.47981022429523 1.20506808572601 0.234547108971791 0.230998025079476 0.234193356975870 0.230134882012435 0.229414485827519 0.238286838847938 0.245875772580082 0.272115314531234 0.240334693401151 0.234714325308333 0.230569878880609 0.229414485827519 0.241527238258576 0.229414485827519 0.232130432572173 0.231758114405461 0.234947248212155 0.238738931252248 0.235419678069127 3 3 + 10840424 10840939 10840697.455 10839646 10841183 + gene protein_coding_gene FALSE TRUE AT3G28840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28780.1); similar to EBNA-1 [Human herpesvirus 4] (GB:ABB89251.1); contains InterPro domain Protein of unknown function DUF1216; (InterPro:IPR009605) -0.995101938379036 -9.92521441998194 8.70185064678532e-07 0.0132894663077705 10.1045572642936 2.844650672829 -0.995101938379036 0.097379794493994
AT3G27580_at 3.45866637842399 3.2275681676769 4.64405498454496 4.45604114653952 5.02026827085876 5.47626682044813 3.38457007579621 3.676246274974 4.38658938676507 3.93747554954166 4.75417553228653 4.21382238870853 4.34226327876623 4.75193141934845 4.79620586969206 4.922376674536 5.47913881772433 5.38929616506728 4.37710079160503 0.229675963758911 0.231951075647322 0.233452067666261 0.229172422680672 0.240727893549873 0.239673517147751 0.234744639966798 0.237613098861805 0.234648914037219 0.225978715471485 0.232371005904089 0.228015584457632 0.229600710330970 0.223466956730227 0.230795264581192 0.223466956730227 0.228640184754182 0.236402888668804 0.224535677162935 3 3 - 10218998 10219454 10219224.727 10218654 10221213 - gene protein_coding_gene FALSE TRUE AT3G27580.1|AT3G27580.2 ATPK7 (Arabidopsis thaliana serine/threonine-protein kinase 7); kinase a member of a subfamily of Ser/Thr PKs in plants. Identical to Putative serine/threonine-protein kinase PK7 (EC 2.7.11.1) (PK7) [Arabidopsis Thaliana] (GB:Q05999); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to stpk1 protein kinase [Solanum tuberosum] (GB:CAA62476.1); similar to Protein kinase PVPK-1 (GB:P15792); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.02991222017116 9.92459073760412 8.70725585510927e-07 0.0132968504163374 10.1041806008052 8.70039685369286 1.02991222017116 0.106925555658363
AT3G50240_at 5.04224007883059 4.73055026590898 2.91333200308087 2.77844959517261 3.69651223406019 3.589700866883 4.22352054372286 4.09173913043745 5.46413624445374 5.63533261437244 5.28715335259972 6.55069073891347 4.7613161489201 5.01499669442456 5.88241121084234 4.491008258638 4.0739482335475 4.48807205712628 5.64975500032098 0.235809071258354 0.232902468851742 0.232501275274204 0.237463995940103 0.23941650637539 0.241860913135965 0.230230011580489 0.234930504782202 0.245136120069407 0.230720117972294 0.235815578615206 0.233482353099241 0.239937345427665 0.244566677676195 0.235639176993141 0.230230011580489 0.250647341332993 0.231204351089957 0.2468225888126 3 3|0 -|/ 18634369 18635119 18634658.9 18634244 18639864 - gene protein_coding_gene FALSE TRUE AT3G50240.1 KICP-02; microtubule motor Encodes a kinesin-related protein. similar to chromosome-associated kinesin, putative [Arabidopsis thaliana] (TAIR:AT5G60930.1); similar to FRA1 (FRAGILE FIBER 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G47820.2); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72688.1); similar to Os09g0114500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062580.1); similar to putative KIF4 [Oryza sativa (japonica cultivar-group)] (GB:BAD16508.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.89594443138251 -9.92270081623682 8.72365726596539e-07 0.0133210246451292 10.1030389812435 9.20914269305817 -0.89594443138251 0.0656967136658266
AT3G52750_at 8.35208949722655 8.45263317724849 7.21906501402086 6.99737901438797 7.4085065755014 7.31936640213401 9.15140329363985 9.13944014872611 8.85940363233663 9.3539866966908 8.95918100675743 9.34859145591987 8.67331158473373 8.73419287526882 9.20197591782321 9.18287449365139 8.06418128490142 9.21703094890107 9.03036389724361 0.138565997469748 0.144522158910845 0.157505928478365 0.170368563622796 0.160647075094916 0.146042979408238 0.138511535666408 0.147911330603934 0.154455858450916 0.142961528668691 0.139447885194246 0.13751676922435 0.140641453759106 0.14220898366948 0.144722520342342 0.13751676922435 0.163915996598049 0.144498504191358 0.142565328160001 3 3|0 -|/ 19560863 19562189 19561379.333 19560639 19563992 - gene protein_coding_gene FALSE TRUE AT3G52750.1 FTSZ2-2 (FtsZ2-2); structural molecule Nuclear gene that encodes a plastidial division protein (FtsZ2-2). similar to FTSZ2-1 (FtsZ homolog 2-1), structural molecule [Arabidopsis thaliana] (TAIR:AT2G36250.2); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE77845.1); similar to FtsZ-like protein [Nicotiana tabacum] (GB:CAC44257.1); similar to chloroplast FtsZ-like protein [Nicotiana tabacum] (GB:CAB89288.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.848198120230793 -9.92232575948455 8.72691611819712e-07 0.0133251282208752 10.1028123845318 17.0069448177365 -0.848198120230793 0.0449085359761614
AT1G64500_at 8.09741611673159 8.23649597065742 8.84720793676464 8.6544878220258 8.5887874182008 8.28750292222125 10.3654304760777 10.3822065623422 10.4579549334449 10.6916037947563 9.19055573488 8.77203792209954 9.906427177601 9.4652932094584 8.66753764215084 10.1905449329500 10.2864832551180 9.61182841396748 10.7415270059861 0.139544957393942 0.129406824035474 0.133206112852455 0.132595870078084 0.137590314199659 0.135018207303991 0.136260652273287 0.134082903703229 0.132168875653419 0.133632584403251 0.128031454754687 0.130816769384152 0.127542175893884 0.127542175893884 0.129005086716307 0.130010124910634 0.134232880864608 0.127644884936338 0.135261001190959 1 1 + 23957503 23958002 23957752.182 23956896 23958155 + gene protein_coding_gene FALSE TRUE AT1G64500.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Medicago truncatula] (GB:ABE80146.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.89745706600835 -9.91658643828523 8.77694959862054e-07 0.0134006466471738 10.0993431768709 19.0032921268396 -0.89745706600835 0.0664714729555346
AT1G49660_at 5.49167588738373 5.69376876356314 6.64798977515225 6.5786579109374 6.66535481568469 6.80217711292565 7.42047640682824 7.24622241092212 6.48723979286504 6.76480933707336 8.13017773361257 7.68162268618808 8.2012387493698 7.81747702330126 7.84165312258328 8.75976201133405 8.83451566370151 8.05530839325101 6.69656315571671 0.202509556321608 0.207138364575644 0.206774356701618 0.20910687271812 0.201569243287752 0.205785610401356 0.210073408187695 0.203462110305299 0.206693238923954 0.209128266454384 0.202154008109118 0.201092271708026 0.200379469783664 0.204712043754156 0.204491279294287 0.202266386414437 0.20362645139756 0.220244602921181 0.207301557791431 1 1 - 18382507 18383020 18382811.273 18382365 18383467 - gene protein_coding_gene FALSE TRUE AT1G49660.1 similar to cell death associated protein-related [Arabidopsis thaliana] (TAIR:AT1G49650.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83375.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.86309551543334 9.89451151641465 8.97230579717997e-07 0.0136980192605547 10.0859698682200 13.9756688111593 0.86309551543334 0.05326408734481
AT3G21750_at 6.648087865945 7.09833483044746 5.46926320269381 6.21043299982103 5.6340002470322 5.58395740196981 7.04430248675726 7.34246505093332 6.17424765359524 6.53422674251998 4.48789606560128 4.75269519161815 4.59739200121763 4.52583663971383 4.69780167085664 5.76976934537127 5.20114774705266 5.44303829602588 5.63759482122783 0.212517966492529 0.210844953867140 0.210877051805429 0.208972389574235 0.206531278751206 0.214374139618964 0.209596561155126 0.215986826701501 0.219026778184753 0.215391482172766 0.218221952081403 0.205103248397437 0.210148404067412 0.209201476722095 0.207983571941699 0.209939181685337 0.208301428340820 0.213989672479390 0.207942956831521 3 3 + 7665419 7665933 7665634.091 7664352 7666202 + gene protein_coding_gene FALSE TRUE AT3G21750.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21760.1); similar to glucosyltransferase NTGT3 [Nicotiana tabacum] (GB:BAB88934.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.24489669087020 -9.88765505064061 9.03393767981447e-07 0.0137912092620048 10.0818064631538 11.9037572734316 -1.24489669087020 0.158933557590586
AT2G45220_at 4.68260894901328 5.35359663589937 7.24750577392449 7.80343846881053 5.33016243044297 4.85848921436723 1.57896712913944 1.58533609446597 1.21861283544327 2.43559945513026 1.41179747296497 0.973053446433005 1.58682130968111 1.08489281742788 1.38057066237157 0.905548987963794 1.86429883870061 1.58285624665112 1.61009468040760 0.374460005760916 0.360619576674068 0.390291376667860 0.375167421320274 0.367049353342312 0.376424142039217 0.345293473648159 0.345352753468196 0.350631746791555 0.345293473648159 0.345293473648159 0.345293473648159 0.345293473648159 0.356667802512334 0.345293473648159 0.345293473648159 0.345293473648159 0.35015185627497 0.345293473648159 2 2 - 18651375 18651922 18651652.364 18651158 18653521 - gene protein_coding_gene FALSE TRUE AT2G45220.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); similar to Pectinesterase-2 precursor (Pectin methylesterase) (PE) (GB:O04887); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501); contains InterPro domain Carbohydrate-binding and sugar hydrolysis; (InterPro:IPR006633) 1.30186637610200 9.8765576435154 9.13466428787238e-07 0.0139440650354372 10.0750581360843 6.35676256855856 1.30186637610200 0.171472794339822
AT1G20070_at 10.0229538761547 9.9173064795941 11.4634587885936 11.3839828731373 11.9539409954712 11.4782151460141 12.0424635717251 12.1045987841215 9.67060127285342 10.5639550835640 11.3153451387658 10.7561123684095 11.7746307725356 11.5185997400169 10.6472664434729 11.6806850891456 11.9686365333298 11.4107444881709 9.85453496542228 0.0766906435420046 0.0794692787427521 0.0732988425354031 0.07627756025178 0.0745223301856962 0.0752655365267213 0.0741489533873358 0.0734158753919716 0.092200055465697 0.0766089487824719 0.0724424464511342 0.0723375817620669 0.0717514288530009 0.0796995810420966 0.0752743670267367 0.0724374216133728 0.0760876675811948 0.0735992305102583 0.0735715335005526 1 1 - 6958239 6958719 6958471.727 6958001 6959114 - gene protein_coding_gene FALSE TRUE AT1G20070.1 unknown protein 0.951187118678078 9.86730679872635 9.2195598533976e-07 0.0140727361602261 10.0694235006641 22.0027149038568 0.951187118678078 0.0861203299560378
AT1G15520_at 3.19100614418004 4.02700246211554 7.28717656282864 7.82892503357267 3.46931619549864 3.00462454825861 1.90045477105165 1.71306958783491 1.77555544001398 1.42682392708275 2.00234492435311 1.95222908111093 1.8901074361209 2.25157261298528 1.73603883807895 1.80936546760883 1.87721021216678 1.48710983515660 2.07636603893500 0.310451674487987 0.317401100852346 0.420217854587797 0.376119183632715 0.326268032447938 0.317965687763937 0.3046675990813 0.308489969131713 0.311813663888065 0.305452146200248 0.3046675990813 0.306061856517786 0.31060143021966 0.3046675990813 0.3046675990813 0.3046675990813 0.312076954791263 0.310758194098834 0.3046675990813 1 0|1 /|- 5332020 5332558 5332325.1 5331853 5338170 - gene protein_coding_gene FALSE TRUE AT1G15520.1 ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12); ATPase, coupled to transmembrane movement of substances ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots. Identical to Pleiotropic drug resistance protein 12 (PDR12) [Arabidopsis Thaliana] (GB:Q9M9E1); similar to ATPDR11/PDR11 (PLEIOTROPIC DRUG RESISTANCE 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G66950.1); similar to ATPDR6/PDR6 (PLEIOTROPIC DRUG RESISTANCE 6), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G36380.1); similar to ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15210.1); similar to pleiotropic drug resistance like protein [Nicotiana tabacum] (GB:BAB92011.1); similar to Pleiotropic drug resistance protein 1 (NpPDR1) (GB:Q949G3); similar to Pleiotropic drug resistance protein 1 (NtPDR1) (GB:Q76CU2); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.40289642134060 9.85728572472803 9.31248873127676e-07 0.0142136515505477 10.0633102653599 5.87036146464671 1.40289642134060 0.192972074061646
AT2G24120_at 4.81835714145778 5.00940927046255 4.42437764974734 4.41708171295765 4.06502004947114 4.22459408760310 4.55741148613281 4.76295368132266 3.50805467484939 4.22145776328455 2.4927356482269 2.80084498712429 3.130621564522 2.51808987641621 2.96680551618474 2.98444212114085 3.25185536356559 2.62254832874848 4.4753694759798 0.266776582327812 0.261780634389626 0.251899020333488 0.267874284124869 0.254647047603493 0.255201650382512 0.270516503542908 0.266788134641256 0.2565476413904 0.264276007987591 0.255478568442379 0.251210146147727 0.261741493848847 0.262104807491548 0.256689864973139 0.252452656725483 0.260217570467802 0.259452153598913 0.252085348269521 2 2|0 -|/ 10256504 10257761 10257179.1 10255995 10261721 - gene protein_coding_gene FALSE TRUE AT2G24120.1|AT2G24120.2 PDE319/SCA3 (PIGMENT DEFECTIVE 319, SCABRA 3); DNA binding / DNA-directed RNA polymerase Identical to DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (RPOT3) [Arabidopsis Thaliana] (GB:O24600); similar to DNA-directed RNA polymerase, mitochondrial (RPOMT) [Arabidopsis thaliana] (TAIR:AT1G68990.1); similar to DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana] (TAIR:AT5G15700.1); similar to DNA-dependent RNA polymerase [Spinacia oleracea] (GB:CAC80139.1); similar to DNA-directed RNA polymerase 3B, chloroplast precursor (T7 bacteriophage-type single subunit RNA polymerase 3B) (NictaRpoT3-tom) (GB:Q8L6J1); similar to DNA-directed RNA polymerase 3, chloroplast precursor (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C) (GB:P69242); contains InterPro domain DNA-directed RNA polymerase, bacteriophage type; (InterPro:IPR002092) -0.863282782764628 -9.82910925777326 9.57925616361962e-07 0.0146198607569163 10.0460686956383 7.99204408345056 -0.863282782764628 0.055879673669914
AT1G19510_at 6.83492717206029 7.35361670231161 5.13061725016819 5.68296934216138 5.69667181961052 5.7021171344046 6.13611709699709 6.84393413534228 5.05318069250093 5.20775711294152 3.05072059967355 3.27796642565232 4.72408559421587 4.29549825555177 2.58089120628976 5.12705566844868 4.41053502639988 2.77422917478281 5.35165056255935 0.310190439889066 0.317740354972055 0.3118480410197 0.311958264591196 0.310449781507892 0.31223089620003 0.315250874920327 0.312401100910512 0.319764013307781 0.310190439889066 0.318354676568916 0.325011012469684 0.310190439889066 0.313378502934111 0.334244514327731 0.310190439889066 0.316538544866199 0.337524390452862 0.310823191048053 1 1 - 6757045 6757257 6757145.091 6756277 6757368 - gene protein_coding_gene FALSE TRUE AT1G19510.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G75250.2); similar to myb-like protein RL3 [Antirrhinum majus] (GB:ABI14752.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.33156413444104 -9.8156921505218 9.70918350705564e-07 0.0148171849501176 10.0378310914973 10.6647807649040 -1.33156413444104 0.179440770069075
AT3G03920_at 7.38949818484754 7.91106773621692 6.24665945334598 6.91712218865396 6.40462610151714 6.18843030764205 6.92263645935708 7.51439094011905 7.34800173050568 6.25184260001476 4.7165712799394 5.34549660929459 4.76292268419195 5.12338787541937 5.50986346196843 4.98683256125403 5.0543480999734 4.46627190629774 6.4901585266477 0.228914804303271 0.232312534043581 0.238026257942527 0.234830171073163 0.227996699261257 0.236842284484327 0.239791478613986 0.226552808255849 0.235657818988142 0.221849621590120 0.223716721082384 0.221660966332429 0.230016355347984 0.225200812931745 0.236291269308237 0.228044445107660 0.238625009558032 0.235943929873409 0.230267128312257 3 3|0 -|/ 1009148 1010216 1009573 1009002 1010487 - gene protein_coding_gene FALSE TRUE AT3G03920.1 Gar1 RNA-binding region family protein Identical to Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Arabidopsis Thaliana] (GB:Q8VZT0;GB:Q8LG22;GB:Q9S715); similar to Gar1 RNA-binding region family protein [Arabidopsis thaliana] (TAIR:AT5G18180.1); similar to Os11g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068150.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_796892.2); contains InterPro domain Gar1 protein RNA-binding region; (InterPro:IPR007504) -1.34807231330453 -9.81111626694427 9.75393026591958e-07 0.0148844975857933 10.0350176024778 12.7829936358867 -1.34807231330453 0.183018628279378
AT1G35230_at 7.43821518499363 7.84486640768068 9.13692816610227 9.33382534905663 6.37190180997066 6.89906602214015 1.59202232701378 2.22036285031945 4.83964184191258 3.08181143961293 2.94840387566044 3.63600528127352 2.13547637560503 2.89757216780799 3.07814251912333 2.61733862306654 2.65484250113570 2.51100912861524 2.50051852753572 0.291061057560808 0.291878180288543 0.291478012168406 0.287006606325364 0.297838386995622 0.297766820323807 0.293497191659566 0.287006606325364 0.292882316697343 0.287006606325364 0.296926432682546 0.287006606325364 0.287006606325364 0.287006606325364 0.287471798529747 0.287006606325364 0.292429686445974 0.287184760511094 0.28864388551441 1 1 + 12917360 12917492 12917430.727 12917127 12917741 + gene protein_coding_gene FALSE TRUE AT1G35230.1 AGP5 (ARABINOGALACTAN-PROTEIN 5) Encodes arabinogalactan-protein (AGP5). Identical to Classical arabinogalactan protein 5 precursor (AGP5) [Arabidopsis Thaliana] (GB:Q8LCE4;GB:Q9ZT15); similar to AGP10 (Arabinogalactan protein 10) [Arabidopsis thaliana] (TAIR:AT4G09030.1); similar to putative arabinogalactan-protein precursor [Nicotiana glauca] (GB:CAH69225.1); contains domain PRICHEXTENSN (PR01217) 1.24871092516555 9.80492489543602 9.81483033584345e-07 0.0149764496094635 10.0312075306004 9.49656822068785 1.24871092516555 0.162048634594297
AT2G40360_at 7.51477125417461 7.36884988720446 6.75545243370504 6.60919545037157 6.30266380344177 5.89184106212274 6.71150066557639 7.04879037086147 4.99793960704266 6.25267358045346 4.36832186776501 5.32649752356877 4.59792662213885 4.30270145425981 5.1037936162944 5.11891017663429 5.03110866618614 4.39484374423938 6.70312204152938 0.273861778947771 0.270911879544364 0.276266380615003 0.274288767443048 0.276383526388894 0.275597805411825 0.275473091833825 0.273655669575227 0.294957661353264 0.285249478309453 0.278276545645696 0.271650474573403 0.279634291366975 0.284401097314861 0.279981235576587 0.272553223302828 0.287296931471354 0.280254530457610 0.281433797979692 2 2 - 16860220 16860808 16860536.909 16859958 16863768 - gene protein_coding_gene FALSE TRUE AT2G40360.1 transducin family protein / WD-40 repeat family protein similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to putative WD-40 repeat protein [Trifolium pratense] (GB:BAE71307.1); similar to WD40 [Cucumis melo] (GB:AAU04772.1); similar to putative transducin / WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84089.1); contains InterPro domain BOP1, N-terminal; (InterPro:IPR012953); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.987627653916643 -9.80470647502136 9.81698628343932e-07 0.0149787576712717 10.0310730488403 12.1579288002128 -0.987627653916643 0.098690302851886
AT4G31290_at 8.21366393223934 8.0620973818363 4.18368700144669 4.20869027110978 7.33127427080904 7.3273368463552 6.8298072340763 6.25175686316408 8.14124862600972 8.00892730424305 8.75817873766432 8.61209374730498 8.15981038041532 7.95593816329032 8.55646622176385 6.96175656687128 6.62810834534579 8.06956686156562 9.03756610796849 0.210938789018383 0.207721294864060 0.227633029345365 0.214814278049264 0.211268131414584 0.218741188518355 0.206860591144536 0.215760656030068 0.228583673089894 0.212846458175943 0.206210509364303 0.206423330076927 0.211141697246533 0.219537646329571 0.208170414091174 0.208595676029291 0.206680969347539 0.212702900682933 0.209633540252590 4 0|4 /|+ 15187096 15188244 15187750.375 15185964 15188490 + gene protein_coding_gene FALSE TRUE AT4G31290.1 ChaC-like family protein similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT5G26220.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to meloidogyne-induced (GB:ABA46779.1); contains InterPro domain ChaC-like protein; (InterPro:IPR006840) -1.00487919505578 -9.80443796749043 9.81963732504837e-07 0.0149818206668263 10.0309077218971 14.7303661705136 -1.00487919505578 0.103508581432153
AT4G11360_at 8.84768763493261 9.10184919397445 9.49205698208312 9.5240643402412 10.0607862437364 10.1191817959484 7.34266188581231 7.99551011254986 7.22594077345545 7.05030167302646 7.3695764231348 7.44823707608635 8.00040266052542 8.24190004002195 6.77243920379124 8.64290500209082 8.3026213724228 7.83464989869112 7.19464206801431 0.205431998129938 0.196203760873788 0.213245192643298 0.205321841648479 0.212062777634249 0.214432786767233 0.201293689624472 0.202906786177616 0.207322433712062 0.213881067227356 0.198435967876050 0.197376390317117 0.197025930014249 0.198348571866172 0.196234844585304 0.196565918679355 0.212957743401914 0.198637835291227 0.203703992459993 4 4 + 6906083 6906471 6906279.182 6906009 6906754 + gene protein_coding_gene FALSE TRUE AT4G11360.1 RHA1B (RING-H2 finger A1B); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA1b. Identical to RING-H2 zinc finger protein RHA1b (RHA1B) [Arabidopsis Thaliana] (GB:Q9SUS5;GB:Q9ZT51); similar to RHA1A (RING-H2 finger A1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G11370.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.07336254422424 9.79095565391021 9.95375315276593e-07 0.0151854458098597 10.0225971292412 16.5522512558736 1.07336254422424 0.121784681197370
AT4G37540_at 4.94517366061162 5.47309970944239 5.13253965874498 5.58378782038808 5.59033629262104 5.37959877351518 7.3126163082001 7.49849811960887 6.87361122096491 6.67964061607772 5.78192925432842 5.15463485805322 4.15012926546675 5.30584759718121 5.272769268625 3.84316925813203 5.67446876264165 5.83406400558601 5.80231018513448 0.242066189273739 0.225538971413548 0.234360961192192 0.231471796461691 0.234786876094666 0.237954692899171 0.235891796569741 0.226164472732472 0.233975525947619 0.226406320776918 0.232637022577772 0.227995462562302 0.228746239559843 0.228937393515894 0.225260682734705 0.229956096953950 0.248914036983637 0.225260682734705 0.228366669326971 4 4 - 17639721 17640149 17639936.727 17639527 17640651 - gene protein_coding_gene FALSE TRUE AT4G37540.1 LOB domain protein 39 / lateral organ boundaries domain protein 39 (LBD39) Identical to LOB domain-containing protein 39 (LBD39) [Arabidopsis Thaliana] (GB:Q9SZE8;GB:Q8LBC9); similar to LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) [Arabidopsis thaliana] (TAIR:AT3G49940.1); similar to lateral organ boundaries domain protein [Caragana korshinskii] (GB:ABG90382.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -1.10525439339450 -9.79004807311269 9.96285230923564e-07 0.0151983311977390 10.0220370422677 11.6539465634636 -1.10525439339450 0.129651690951885
AT4G30650_at 10.3675132370462 10.4419006542763 6.67337959417415 6.39820532614132 8.82848408282576 8.22138468710336 8.0510420468964 7.71281507820731 3.97418675925520 5.75382540589798 8.91036944203202 9.80091100882666 8.63151598425598 8.98837238366119 8.94230177251445 8.77053184406702 7.36711363426033 8.22430242072777 4.908785659216 0.212769358170808 0.221517068712483 0.218299697954138 0.229540817840865 0.205763450665043 0.205763450665043 0.208340122010032 0.208262436198702 0.236267369483455 0.213067584741627 0.205763450665043 0.211909084387659 0.210237634051358 0.218003284901879 0.208677409887034 0.207736906248908 0.226120163900965 0.205814257004884 0.223493234456007 4 4|0 +|/ 14954412 14954678 14954553.2 14954326 14954974 + gene protein_coding_gene FALSE TRUE AT4G30650.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At4g30650 [Arabidopsis Thaliana] (GB:Q9M095;GB:Q6IDS0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G30660.1); similar to salt and low temperature response protein [Brassica rapa subsp. pekinensis] (GB:AAT11798.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 1.10627018581236 9.78667616924512 9.99673704464193e-07 0.0152490226878968 10.0199554537954 15.1285205480420 1.10627018581236 0.129989457996478
AT3G23805_at 4.91438117947249 5.05232201068278 3.55043905576895 3.97780335419874 3.39319292438337 3.65953693722163 6.37982040141409 7.25320990042604 7.37938444277683 6.64771980445367 7.71291225665607 7.36299483830896 7.14321780563331 7.29273793845678 6.72716320611142 6.17790408140706 4.81895936222066 6.53037094650476 7.23676465556476 0.228083824540396 0.223848516728607 0.226887036936409 0.226601434690816 0.229751332367879 0.230218940642252 0.228182700092383 0.230203097838067 0.222998536982446 0.228757059356575 0.223523247285752 0.222998536982446 0.222998536982446 0.226155216070005 0.234780938110574 0.222998536982446 0.244174436880064 0.222998536982446 0.228325283895158 3 3 + 8586491 8586805 8586647.545 8586389 8587063 + gene protein_coding_gene FALSE TRUE AT3G23805.1 RALFL24 (RALF-LIKE 24) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL31 (RALF-LIKE 31) [Arabidopsis thaliana] (TAIR:AT4G13950.1); similar to rapid alkalinization factor 1 [Solanum chacoense] (GB:AAR00325.2); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -1.31093202581252 -9.78059129916963 1.00582008719369e-06 0.0153417737899654 10.0161962019705 11.6769576481181 -1.31093202581252 0.176092475900706
AT3G63380_at 4.9800275938383 4.74408259800989 7.38415573448158 6.51185114489959 3.73444462982652 3.79865369427756 0.560570683469723 0.688300654170512 0.384589691873628 0.655217188375657 0.846446078957953 0.331979663177669 0.72390924312226 0.429145069629731 -0.324290164937918 0.550896615664779 0.678780637639159 0.629110085793713 0.884727768819526 0.394007456930274 0.401418239096174 0.390394579094441 0.405243213043396 0.385209123330505 0.376083996690434 0.356656653674897 0.352762097990810 0.357032863998487 0.352762097990810 0.358541520529348 0.352762097990810 0.352762097990810 0.352762097990810 0.36721599719699 0.352762097990810 0.355167795749218 0.358279384880397 0.352762097990810 3 3 - 23418089 23418622 23418348.364 23417586 23421335 - gene protein_coding_gene FALSE TRUE AT3G63380.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) Identical to Putative calcium-transporting ATPase 12, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 12) (ACA12) [Arabidopsis Thaliana] (GB:Q9LY77); similar to ACA10 (autoinhibited Ca2+ -ATPase 10), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G29900.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) [Arabidopsis thaliana] (TAIR:AT3G22910.1); similar to ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G57110.2); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17950.1); similar to Putative calcium-transporting ATPase [Oryza sativa] (GB:AAM08790.1); similar to putative calcium-transporting ATPase 8, plasma membrane-type [Oryza sativa (japonica cultivar-group)] (GB:BAD09972.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 1.22788326122026 9.77439810276723 1.01211792035084e-06 0.0154368225211911 10.0123662442402 4.61264019328197 1.22788326122026 0.158325922295070
AT4G23450_at 4.04688702053923 3.93354699560238 5.09952958157203 4.94158798618976 4.99568549482176 4.64167228939385 2.2877645886234 2.65156221829493 2.16925448170157 1.70038956602176 2.0724938646524 1.67802298891128 3.05001620211417 1.81810347452677 1.56835302693224 2.38424285298105 2.61601561190638 2.18900217223414 1.90814552985248 0.251179875555913 0.251708876309266 0.25811674298 0.263656261865995 0.248770585188089 0.267185624675443 0.263915376765153 0.265825033319657 0.255954517373321 0.248933071040051 0.247395662313789 0.256178375433335 0.247395662313789 0.250476314214611 0.247592815667214 0.248261351060164 0.256223702147144 0.248956725088212 0.249093283991697 4 0|4 /|- 12241261 12241695 12241486.6 12240813 12242716 - gene protein_coding_gene FALSE TRUE AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41350.1); similar to Os10g0142100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064147.1); similar to Os11g0294600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067717.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65911.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.967890023659865 9.76774542713827 1.01893058163787e-06 0.0155397103005592 10.0082478835071 6.12376008861678 0.967890023659865 0.0940668824896903
AT4G18570_at 6.39834741868726 6.50993766913069 4.76026042985551 5.00393679108214 5.99102916634564 5.95425537993743 7.87520605774272 7.70196112568313 7.74031735638947 7.2634528163987 8.18764371349827 8.10770987901918 7.91067532274235 7.64116548305427 7.52767687661721 7.3793485843201 6.88835958695704 7.53529528242597 7.9985363522039 0.231706852152679 0.232307066083931 0.23975561629108 0.247080679912156 0.235443113018645 0.246417998566774 0.237098286871881 0.237728146841415 0.243522952212699 0.233375543472052 0.228160315917644 0.233485036590943 0.230994834039259 0.232478546583015 0.231707274132593 0.231682157961051 0.25772271529299 0.232977852229144 0.232510843198816 4 4|0 +|/ 10233091 10234289 10233529.5 10231229 10234704 + gene protein_coding_gene FALSE TRUE AT4G18570.1 proline-rich family protein similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to pherophorin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68701.1); similar to Os05g0573900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056385.1); contains domain TPR-like (SSF48452); contains domain FORMIN-LIKE 1 (PTHR23213:SF27); contains domain FORMIN-RELATED (PTHR23213) -0.857096896628583 -9.76613065381734 1.02059166328888e-06 0.0155640228651554 10.0072475875473 13.9317016795131 -0.857096896628583 0.0555924931925767
AT3G19680_at 4.46614203346458 4.87952416822695 3.9226803399354 4.10604160564031 4.04417378237571 3.87931956672482 6.00953312952657 6.10672017476831 8.20322716006323 5.77476302675573 8.05762472591819 6.96657158171971 6.49566704513526 7.92491971593063 5.93057779025254 6.28488803904744 5.07443775365607 5.72079247994783 7.18386400829794 0.228326034408317 0.232432272915776 0.244074244879109 0.228795804610345 0.227167628456213 0.233758019093378 0.224515448174418 0.228284871315043 0.249299676598103 0.222769540746413 0.229463671790392 0.225295476563084 0.225318747987611 0.227006047065947 0.225141860396985 0.222769540746413 0.241887029994873 0.229092993358884 0.231280784179347 3 3 + 6841529 6842044 6841761.909 6840287 6842326 + gene protein_coding_gene FALSE TRUE AT3G19680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50040.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93135.1); contains InterPro domain Protein of unknown function DUF1005; (InterPro:IPR010410) -0.93722127987444 -9.7602295020304 1.02668702232234e-06 0.0156559504033934 10.003589817166 11.4822099949945 -0.93722127987444 0.0849781886652017
AT2G20020_at 5.26086243423659 4.84810915178623 4.5267406990626 3.90306540753862 4.03611587990427 3.56836831241634 6.4269265523919 6.08524119905654 3.70056857645896 4.6933116893262 3.03400935097817 3.56294955578352 2.90872066131825 2.77642928009093 3.70183448815894 4.065502334767 3.65703859192627 3.17844390416308 4.25026751132091 0.222008674683173 0.223424143736732 0.234476410989152 0.232197597671787 0.220341726913777 0.235395688023386 0.225868796464566 0.222806426360447 0.223613384850117 0.225859294103322 0.228329593424384 0.222630769340638 0.224159899754272 0.225644497283010 0.22124798716037 0.219156201989284 0.220132280035319 0.222530828338228 0.219790988967302 2 2 + 8653577 8653940 8653764.091 8651467 8654272 + gene protein_coding_gene FALSE TRUE AT2G20020.1 similar to ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2) [Arabidopsis thaliana] (TAIR:AT1G23400.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE81273.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -1.25040608222056 -9.75871883828642 1.02825372918845e-06 0.0156788128626655 10.0026528885413 8.61959467784928 -1.25040608222056 0.163705761387231
AT2G35980_at 3.00198561745816 3.08515150225224 5.28343986396581 5.5383269478797 2.42743040971273 2.73424364633522 0.912670341752672 0.546966705389504 1.22881485079080 0.919769550253211 0.72931304412557 0.496329540170829 0.561044870065238 0.533643335784972 0.491026613406329 0.653479625048982 0.662537909925391 1.32400544215554 0.418478779659003 0.286407463125919 0.276046733899917 0.286766361351796 0.306641700971259 0.273331751188500 0.263006306144318 0.273361058391055 0.269670786683044 0.263006306144318 0.263006306144318 0.268908037230111 0.264597155290660 0.263719847738091 0.263803093715737 0.264757748724277 0.265402771111536 0.263006306144318 0.268879533084036 0.264694399821828 2 2 + 15117821 15118364 15118032.091 15117667 15118550 + gene protein_coding_gene FALSE TRUE AT2G35980.1 YLS9 (YELLOW-LEAF-SPECIFIC GENE 9) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. similar to NHL2 (NDR1/HIN1-like 2) [Arabidopsis thaliana] (TAIR:AT3G11650.1); similar to harpin inducing protein [Nicotiana tabacum] (GB:AAF62403.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.967450747972286 9.73990538904261 1.04798342721339e-06 0.0159786033147226 9.99096549203822 3.70983201658643 0.967450747972286 0.0947476262646637
AT2G32680_at 9.54554099323172 9.73404948288625 10.6990111002227 10.7321807221363 9.53404015795769 9.6412161461428 3.66927626403199 4.0632098656431 8.69588979811246 5.61538979539319 4.85296980464116 6.10328247183488 5.56561292932417 5.57095435681618 5.0856681806262 6.10624166376689 4.88665726010372 5.13272955296403 6.64280205057622 0.311121040850425 0.311528590122055 0.312635040014757 0.315028612038482 0.308487695579452 0.309529813561330 0.311683452802146 0.320555912974564 0.306485184898898 0.309386529224645 0.317922506215675 0.306485184898898 0.306485184898898 0.306485184898898 0.311847450628419 0.306485184898898 0.329201213679266 0.306485184898898 0.306485184898898 2 2 - 13867133 13867592 13867356.636 13866846 13869691 - gene protein_coding_gene FALSE TRUE AT2G32680.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33020.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.913456763157813 9.7350946053904 1.05309403256688e-06 0.0160554716205146 9.98797122184217 14.6511697959667 0.913456763157813 0.0780294343539933
AT2G39210_at 9.40879964504122 9.9337866253554 10.0358016802649 10.1229518136578 8.57820484953506 8.48944799592478 4.58933211553683 4.83745881459836 8.22846093212586 5.67033395560734 6.17372134567656 7.98425479183998 4.14305338695109 6.98321082067861 6.34518110785787 6.32662343124029 5.82882648382215 6.54397596136842 5.34778882566774 0.250107217659135 0.257965109095217 0.262026005778763 0.255193339853469 0.247833071101076 0.258688238830177 0.252447598003548 0.250609420595735 0.245911869569627 0.246617055810269 0.249054857690475 0.245911869569627 0.250290621752397 0.248172284266745 0.248408113690605 0.245911869569627 0.253044020964334 0.249104371151254 0.256636905747841 2 2 - 16373550 16373909 16373745.091 16373235 16375353 - gene protein_coding_gene FALSE TRUE AT2G39210.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G28120.1); similar to putative nodule-specific protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37543.1); similar to nitrate and chloride transporter [Glycine max] (GB:AAW51884.1); similar to putative nodule-specific protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83908.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) 0.994917648212538 9.7333130282686 1.05499348198915e-06 0.0160833756329246 9.9868617652969 14.6027898528125 0.994917648212538 0.102767534501511
AT2G36390_at 8.78947318537192 8.47339105083198 8.84985329298929 8.63064536842475 9.36475932917712 8.90585149094661 7.93226288755907 7.38477613430288 5.5442861538964 7.04856478056968 8.20294500903313 7.91305655988122 7.99522660825367 7.66137491308322 7.87403660263048 7.45481266720587 8.54056859856065 7.6803374263039 6.66944173897234 0.175225597890414 0.177592776862543 0.183221473982008 0.176423463320687 0.175481537740891 0.178259508348432 0.180646138267923 0.178596691315025 0.196720396850614 0.187721635447605 0.178049140639908 0.175225597890414 0.183539746063699 0.181986413791680 0.188590512041214 0.175225597890414 0.176997457747035 0.191130609440436 0.182205922785463 2 2 + 15276382 15276993 15276698.182 15271316 15277171 + gene protein_coding_gene FALSE TRUE AT2G36390.1 SBE2.1 (STARCH BRANCHING ENZYME 2.1); 1,4-alpha-glucan branching enzyme Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues. similar to SBE2.2 (STARCH BRANCHING ENZYME 2.2) [Arabidopsis thaliana] (TAIR:AT5G03650.1); similar to starch branching enzyme I [Pisum sativum] (GB:CAA56319.1); similar to starch branching enzyme class II (GB:AAB03099.1); similar to starch branching enzyme II [Solanum tuberosum] (GB:CAB40743.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) 1.14366606475376 9.73081565014767 1.05766233616936e-06 0.0161230046525658 9.98530601602951 15.7094061037497 1.14366606475376 0.140408899308204
AT3G15450_at 11.9909051022215 12.1470004010235 10.9613001138800 11.0640023424170 12.7827340267257 12.2851600199329 8.92593314939856 9.01888958897294 10.2871642112142 9.58594627569068 10.7915660657749 11.1444495172049 10.8482667486109 10.6961896507726 10.8127192157219 10.5976547170140 10.7865752294385 10.6664547329746 10.5005264663419 0.121785281274491 0.119361839497251 0.121762449149387 0.123836225860271 0.127310057817180 0.124408241404722 0.12483167299178 0.124063346667825 0.135537233237309 0.129115080632808 0.119653070895514 0.119069197947297 0.119069197947297 0.131142883254920 0.121417227205087 0.119069197947297 0.126533078596736 0.119069197947297 0.122760449800160 3 3|0 +|/ 5213223 5213973 5213557.7 5213004 5214131 + gene protein_coding_gene FALSE TRUE AT3G15450.1|AT3G15450.2|AT3G15450.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) 0.96052794947078 9.71707219580289 1.07248081927665e-06 0.0163478251282339 9.97673328345211 21.6057556609572 0.96052794947078 0.093374863933551
AT4G21650_at 4.12599652251762 4.05524557552855 3.90070471102034 4.16334032358977 4.12417618632453 3.94573552904096 4.21891492220643 4.40445073776280 4.29024963029706 4.76290365137773 6.71428518253152 6.60032074290942 6.15794671899292 6.42965301607022 6.57846316183666 7.33851825869853 5.27396372432628 6.88236291397225 4.68996282169909 0.197531366283608 0.196821293158569 0.196874443569733 0.198352053313876 0.199360685737327 0.196275926244786 0.201103310464197 0.198208013103707 0.195301155590924 0.196709014398727 0.204876191944365 0.196070345322492 0.200897489673537 0.209688724085538 0.207376251469633 0.20289097564004 0.201100353134446 0.217322302593473 0.194906281253783 4 4 - 11501403 11501845 11501690.364 11501210 11504690 - gene protein_coding_gene FALSE TRUE AT4G21650.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21640.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32960.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21630.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.874118880891326 9.70638240049965 1.08416214158220e-06 0.0165247993619958 9.9700521931 9.6563095215198 0.874118880891326 0.0648083982535354
AT1G52000_at 8.03551271772859 8.51310798953228 6.9815887733168 7.48799837950518 9.05467402201025 8.1982640237681 5.085613398141 5.53087874385572 1.66573938316615 5.12908907221088 4.06880310819241 5.1308822020018 6.91670563113554 4.64886018406301 4.04236631367078 6.23906567052769 5.63257808997423 4.95876268465291 3.57839868364105 0.262265653659099 0.261468298497262 0.254611706468806 0.256978748813629 0.263498557346441 0.292743415958236 0.262952830182389 0.259664363983072 0.291169912583410 0.260104158976649 0.26410313384818 0.257587573735293 0.254611706468806 0.262342624566317 0.260746633507246 0.254611706468806 0.262123554561226 0.260524826782169 0.261244681191344 1 1 - 19337026 19337542 19337265.727 19336828 19339784 - gene protein_coding_gene FALSE TRUE AT1G52000.1 jacalin lectin family protein similar to MBP1 (MYROSINASE-BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52040.1); similar to myrosinase-binding protein [Brassica napus] (GB:AAC08048.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 1.44318184659515 9.69523575267917 1.09648950983660e-06 0.0167115966194196 9.96307330595555 11.6922024385822 1.44318184659515 0.205945756219402
AT3G29180_at 7.04981502514223 7.0022497261313 7.9956467651613 7.94436505101363 8.3564458015524 8.47897050292697 6.96407133906253 6.75909907323634 7.01772430910833 6.77712857762777 7.16126223019097 6.94958846704158 6.44409374884169 7.1418345846764 7.06962573431285 7.25215875701676 7.49840409414318 7.12443123706782 6.24592184587735 0.172217423141501 0.172217423141501 0.180002880959385 0.173672414116947 0.180560491186629 0.181343107754542 0.176757222956200 0.172217423141501 0.185795921272804 0.172217423141501 0.175141695487171 0.183116122775556 0.180820254032609 0.175536048556056 0.178209653713714 0.172217423141501 0.179923291216433 0.175263675517873 0.183161485342971 3 0|3 /|+ 11151734 11152513 11152201.333 11149452 11152797 + gene protein_coding_gene FALSE TRUE AT3G29180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39430.1); similar to Os12g0577600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067115.1); similar to Os03g0759000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051338.1); similar to Protein of unknown function DUF1336 [Medicago truncatula] (GB:ABE78635.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.8249824258637 9.69042423171168 1.10185749846937e-06 0.0167923082766732 9.96005694995015 14.4490494609613 0.8249824258637 0.043061830151083
AT2G22500_at 8.51917555460628 8.70490213724967 9.36901366727864 9.2081821915925 7.4674932565375 7.35099869579447 6.19450927846974 6.61201904892765 5.8693427385383 4.54609060308771 5.2006223127767 8.27123144564493 4.482252361346 6.77041558373509 6.3371775439304 5.66804146187471 5.72390508938406 6.94933615583061 5.0289669383828 0.222896619002232 0.221328246161494 0.224368368985484 0.228341828142753 0.221223036207528 0.224300778323826 0.227447017299088 0.223534607340979 0.230433593891680 0.225262300319067 0.227286323072778 0.223089091400485 0.233048083239452 0.228613147833016 0.234108832857463 0.223360410646390 0.230375700881105 0.222856962465484 0.229462807185724 2 2 - 9570651 9571167 9570910.455 9570304 9571831 - gene protein_coding_gene FALSE TRUE AT2G22500.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT4G24570.1); similar to putative mitochondrial dicarboxylate carrier protein [Trifolium pratense] (GB:BAE71294.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) 0.934254882816573 9.6882554889863 1.10428635657781e-06 0.0168282197878892 9.95869659418683 13.5900398142995 0.934254882816573 0.0862233497337802
AT4G23150_at 8.65438451840864 8.67718473416116 9.85174297609667 9.89373100006754 7.50576705092015 7.78547622474741 1.36931692115711 2.04741096649477 5.52625578278869 3.10799341554516 2.69435996702829 2.59749556044613 2.70547915621614 2.84405562501362 2.30511273068816 3.2369569488978 2.73346985539689 2.95201898664158 3.86658640407690 0.224694996657787 0.232138631634147 0.226067315222873 0.228684889989549 0.244140386000029 0.232571273623613 0.241253364343964 0.231966444575952 0.256524860752268 0.224694996657787 0.230218458238727 0.231974741585519 0.234017137974593 0.230011631894726 0.238485231479315 0.226727445578777 0.230413692038378 0.224772361217947 0.230341533339667 4 4 + 12127621 12128287 12128033 12125742 12128343 + gene protein_coding_gene FALSE TRUE AT4G23150.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Arabidopsis thaliana] (TAIR:AT4G23140.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.08188921544501 9.6710372156284 1.12377664996456e-06 0.0171241085921599 9.94787944810235 10.4359087013040 1.08188921544501 0.127207726716501
AT1G08930_at 10.5709793641350 10.6062737486336 10.4838121923878 10.6925806927461 10.7702111452353 10.4712581100281 7.24202398453783 7.5644421816151 10.3494333155393 9.45648041753512 10.1573289046154 10.0482813466753 9.7241223452541 10.1245225529612 9.75042142252586 9.93532604943697 9.30522210143327 9.78531700821403 9.0238597960103 0.125647005396668 0.123073906023472 0.134830201064486 0.123320674408084 0.122178264329898 0.125958143028240 0.163590094047088 0.134761178110269 0.130247818480054 0.124085282674698 0.125841031684075 0.121310719138520 0.121310719138520 0.125822650408741 0.132481737013575 0.121310719138520 0.139092086965171 0.126645729481886 0.125195027275079 1 1|0 +|/ 2875676 2876952 2876296.5 2873468 2877273 + gene protein_coding_gene FALSE TRUE AT1G08930.1|AT1G08930.2 ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transporter/ sugar porter encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. Identical to Sugar transporter ERD6 (Early-responsive to dehydration protein 6) (Sugar transporter-like protein 1) (ERD6) [Arabidopsis Thaliana] (GB:O04036;GB:O65799); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT1G08920.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.926214461031782 9.66276342312246 1.13327435676550e-06 0.0172677013740359 9.94267086137544 19.5320687904570 0.926214461031782 0.0844528730289073
AT2G19450_at 6.10092724870078 6.11919809409947 4.29228547876836 4.72944749772697 5.7699118660486 5.59032512025989 1.66740478266757 1.33826983804791 2.26196548726613 1.67194066743915 2.67981274661662 2.70115502871590 2.04377540833799 2.53614133143116 3.13424582789027 2.4067767567751 2.54168558996165 3.23656853078538 2.05355796933726 0.298800168500412 0.299478199710813 0.291998690713654 0.295765868515883 0.295442836916354 0.299904700274636 0.290698618658846 0.290427649819566 0.297006786480203 0.288338914581693 0.285798994437006 0.288948816885848 0.285798994437006 0.288779763479133 0.287797327275690 0.289269898683584 0.292872534624433 0.290484124799464 0.287153649729651 2 2|0 +|/ 8435263 8436485 8436014.222 8433288 8436818 + gene protein_coding_gene FALSE TRUE AT2G19450.1 TAG1 (TRIACYLGLYCEROL BIOSYNTHESIS DEFECT 1); diacylglycerol O-acyltransferase Encodes Acyl-CoA:diacylglycerol acyltransferase (DGAT) catalyzes the final step of the triacylglycerol synthesis pathway. An insertion mutation in the TAG1 gene results in altered lipid phenotype. Role in senescence and seed development. similar to diacylglycerol acyltransferase DGAT1 [Brassica juncea] (GB:AAY40784.1); similar to diacylglycerol acyltransferase DGAT2 [Brassica juncea] (GB:AAY40785.1); similar to putative diacylglycerol acyltransferase [Brassica napus] (GB:AAF64065.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) 0.976620638852715 9.65985415251195 1.13663460041031e-06 0.0173177647718515 9.94083774152667 6.7788920044125 0.976620638852715 0.0997169843402338
AT3G49260_at 8.25610327399293 8.28939201864577 4.64371280479036 4.37471286521241 6.3753602306192 6.52463669501614 7.22457305038844 7.51664054779552 8.65505366378402 7.93560071582455 9.48882404377867 9.96683257872213 9.03847185504834 9.08419531314404 9.6325215516984 9.00589593160645 6.96249481059694 8.74493729581543 8.71124381451074 0.174234394146238 0.169448389492314 0.187708157580689 0.193733968260232 0.174768704264305 0.183622455801581 0.177245559205402 0.175709772775175 0.176776568384345 0.181961838422027 0.171072474193829 0.173772949381199 0.169069687917114 0.173783272876195 0.175498488630008 0.175357501836883 0.182845138306693 0.169069687917114 0.173692716393873 3 3 + 18276288 18276820 18276562.909 18273415 18277006 + gene protein_coding_gene FALSE TRUE AT3G49260.1|AT3G49260.2 IQD21 (IQ-domain 21); calmodulin binding similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQ calmodulin-binding motif, putative [Medicago truncatula] (GB:ABE77889.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to Os02g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046615.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.892757982975636 -9.64968254632383 1.14846794983226e-06 0.0174969092156945 9.93442188999052 15.3628853044365 -0.892757982975636 0.0736359274855597
AT4G27435_at 1.02388806166008 1.15778802241749 2.17552069675503 2.10159590029867 2.00463567877589 2.44096081072959 1.48096055871620 1.53877929924589 2.88043436279388 2.18138302054625 3.74702184476760 3.44602352196841 2.62886870146118 2.77938229250614 3.15728977870581 2.77918936298066 5.05995956574947 3.64110557216444 2.31435944153945 0.222186144398600 0.218839862731817 0.216450516311843 0.223654161697984 0.214087037446387 0.215543003584374 0.218117903072057 0.216407657327754 0.228498020640287 0.225324439942269 0.216711046884183 0.215885319015601 0.217108968036271 0.226052505278802 0.215144024551014 0.216126608901886 0.256031995543769 0.220626471758704 0.217327249541227 4 4 + 13723911 13724823 13724292.455 13723800 13725143 + gene protein_coding_gene FALSE TRUE AT4G27435.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52910.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.913226878937322 9.64968032619482 1.14847054717285e-06 0.0174969092156945 9.93442048847098 4.67230647274043 0.913226878937322 0.0806361762175807
AT1G23840_at 5.9506417211986 6.32708280378025 6.58314791272326 6.64055161042724 6.06347128891385 6.14644966507537 2.4163170413994 2.49994436708366 4.18669982518279 3.15188851384917 2.73549193055754 3.97031916899962 3.04319532225118 3.06765014561016 3.34616473927817 3.02970312498701 3.78839770580525 3.57238094771749 3.52076581401766 0.260841244166733 0.254453920677895 0.251088963824582 0.251123685593841 0.255144759875083 0.252206022901850 0.263449043931121 0.259417220593356 0.253327730145735 0.254993850589854 0.249847174546611 0.252535330365097 0.249609464279678 0.261673760691259 0.250392482554878 0.251015072138549 0.250951272305452 0.258226084557041 0.249928070293397 1 1 - 8424437 8424833 8424670.091 8424286 8425365 - gene protein_coding_gene FALSE TRUE AT1G23840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23830.1) 0.879643401943524 9.64648472520693 1.15221569573399e-06 0.0175517016931159 9.9324026542863 8.79792460299221 0.879643401943524 0.0689796006470464
AT1G55760_at 5.02844942151427 5.07483424870034 6.36493151967773 6.60988743391252 7.06281797833965 5.9708427262412 4.85509779006348 4.95636846049137 2.45510023223114 3.41403202548337 4.26699035161386 3.57977429274256 5.01900279808536 4.52294955389207 3.32495345129638 4.08948715146679 5.20541881568286 5.18589629775167 3.61516135329043 0.230236050141669 0.234107749122327 0.237003911810537 0.241003100322089 0.241111570773993 0.246832972022837 0.235659101615304 0.237910962999126 0.23741379712411 0.236858137563233 0.230662434257866 0.23638490378176 0.233719996607730 0.238086047967962 0.258532332846329 0.230236050141669 0.238157774158415 0.232792033625095 0.238376975861999 1 1 - 20850794 20851358 20851140.545 20850574 20852720 - gene protein_coding_gene FALSE TRUE AT1G55760.1 BTB/POZ domain-containing protein similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21780.2); similar to BTB/POZ; TRAF-like [Medicago truncatula] (GB:ABE83107.1); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 1.38065515987427 9.64511110176794 1.15382960108601e-06 0.0175751324837422 9.9315349722231 9.52077384373495 1.38065515987427 0.194624621988733
AT4G24290_at 5.52307606662996 5.88703015711025 6.60550709369538 6.38409991260798 7.02656719300531 6.73343668581691 5.93243371416801 5.48569900685699 4.53742010988987 3.64724434586331 4.98032951779598 4.96695874490722 5.19073050609239 5.01906474290803 5.15238906508633 5.21901727109538 5.64180067311594 5.24914229343782 4.03154531568949 0.230153902609276 0.236082381925627 0.229618569561703 0.234870547645317 0.226649461353459 0.232923733968113 0.230173989470374 0.229591131797773 0.238825496977695 0.233407039603411 0.232300497734119 0.224183419288253 0.227284822075159 0.232791474031662 0.233687826648850 0.231196255826575 0.224439356391708 0.226040548119026 0.241954857014747 4 4|0 +|/ 12595504 12596527 12596074.6 12594294 12598038 + gene protein_coding_gene FALSE TRUE AT4G24290.1|AT4G24290.2 similar to NSL1 (NECROTIC SPOTTED LESIONS 1) [Arabidopsis thaliana] (TAIR:AT1G28380.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79564.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862)|similar to NSL1 (NECROTIC SPOTTED LESIONS 1) [Arabidopsis thaliana] (TAIR:AT1G28380.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE83668.1); similar to Os07g0166100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058970.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79564.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862) 1.04285108154038 9.63821811067473 1.16196537849865e-06 0.0176978946799129 9.92717794615457 10.8219807415459 1.04285108154038 0.118258663320279
AFFX-r2-At-Actin-M_s_at 11.0524678116738 11.1952670131522 11.6157491032802 11.9464717380476 11.7717173682639 11.7031848386196 10.997836471142 11.4136443301759 10.9607155386069 10.7610938987014 12.1674768730612 12.1159901106200 12.3385983312046 12.1842701483694 12.1582602557489 12.0345125724036 11.7673435698569 12.0646055720628 10.6114918164026 0.0773929436447995 0.0746568802562051 0.0796186402068918 0.0763297694616789 0.076699964010877 0.0786326932477123 0.0758763874969871 0.0764665202183664 0.0826689935874503 0.0768914440840227 0.0767593616750158 0.0746568802562051 0.0761027429620622 0.0770426918118245 0.0775221530431592 0.0746568802562051 0.0803565376433629 0.0747411303301576 0.076247025920107 NA NA NA NA NA FALSE FALSE 0.960295975056215 9.62711530822004 1.17520081128434e-06 0.0178983083558605 9.92014972600353 22.9028669661625 0.960295975056215 0.0959419108372297
AT1G23020_at 7.14819945660995 7.63042535074082 8.3955549927138 8.25338751287392 9.82933069598336 9.2993190919279 5.9237607955675 5.26120463117294 8.31977597117951 8.47055075445586 8.13854327172455 8.64323784474967 9.36474127457444 8.98545957562716 7.86838645011936 9.66908654591332 9.2394078895675 6.12237374882988 8.49443042116607 0.203203929119269 0.190223303212883 0.206109126346665 0.195215164922385 0.202592052386947 0.217291532022344 0.204486523276477 0.22736242936381 0.206611971883012 0.194586956207882 0.193520487776352 0.193349540693522 0.202144531114397 0.194079076554253 0.190134320665463 0.193529685399069 0.216977820421073 0.207599035430573 0.188032401915593 1 1 - 8150198 8150835 8150530.545 8150075 8153346 - gene protein_coding_gene FALSE TRUE AT1G23020.1 ATFRO3/FRO3 (FERRIC REDUCTION OXIDASE 3); ferric-chelate reductase Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. similar to FRO1 (FERRIC REDUCTION OXIDASE 1), ferric-chelate reductase [Arabidopsis thaliana] (TAIR:AT1G01590.1); similar to FRO2 (FERRIC REDUCTION OXIDASE 2), ferric-chelate reductase [Arabidopsis thaliana] (TAIR:AT1G01580.1); similar to ferric-chelate reductase [Lycopersicon esculentum] (GB:AAP46144.1); similar to iron reductase [Pisum sativum] (GB:AAU94355.1); similar to ferric-chelate reductase [Pisum sativum] (GB:AAK95654.2); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916) 1.26457635386152 9.62160693215364 1.18182771007918e-06 0.0179980541967958 9.9166581771093 16.1837262946515 1.26457635386152 0.170671417160862
AT3G02110_at 5.4868964864756 5.26390464049294 2.29844666687147 2.93572477967089 2.91675267436979 3.50996445969692 5.67626075034245 5.82686216100724 6.38969258840327 6.14461636472762 6.84590299749367 7.78867305723477 6.56670952907038 6.78490548685914 7.6816706859141 6.87910994464195 5.03208436427593 6.33326112751661 6.9704063742832 0.281786998128456 0.280725254704713 0.324185159031093 0.309208019588655 0.305312380989196 0.311732794628652 0.28674962041436 0.28346191487879 0.294293916897186 0.280725254704713 0.287407149651260 0.290916022217822 0.286928184284257 0.281400054373652 0.282776208175806 0.281242596230918 0.291745689268504 0.283966130809683 0.280725254704713 3 3 - 370912 371873 371406 370769 373729 - gene protein_coding_gene FALSE TRUE AT3G02110.1 SCPL25 (serine carboxypeptidase-like 25); serine carboxypeptidase similar to BRS1 (BRI1 SUPPRESSOR 1) [Arabidopsis thaliana] (TAIR:AT4G30610.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os02g0794500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048377.1); similar to Os01g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042076.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -1.20539549555308 -9.6175313373291 1.18675691574620e-06 0.0180719343129832 9.91407281560464 10.8596572898312 -1.20539549555308 0.157701114000534
AT1G21830_at 5.53476106328004 5.94320634963236 5.58482485225306 5.76226696179528 6.27566665624809 6.28113367769315 3.92214808368029 3.91134014954798 5.26088146226433 4.09389487504894 5.57687309279171 6.31704908208515 5.30692167400572 5.06143823370156 6.0065952310312 6.2319694244134 5.53291448429368 4.35197401065012 5.33811071607824 0.182984777200193 0.185204795861224 0.186231187620702 0.187891191403303 0.193273222584185 0.190025162958511 0.197022853333248 0.200252128441501 0.187110520742577 0.188479282091099 0.184615628071415 0.184065477410491 0.187177588884651 0.183040824870367 0.194019518605874 0.182843949513663 0.192918861719782 0.184260076443454 0.187045483928577 1 1 - 7661446 7662468 7661962.85 7661107 7662597 - gene protein_coding_gene FALSE TRUE AT1G21830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44608.1); similar to Os04g0690500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054352.1); similar to CAA30371.1 protein [Oryza sativa] (GB:CAB53474.1); similar to H0814G11.20 [Oryza sativa (indica cultivar-group)] (GB:CAJ86353.1) 0.899348505893313 9.61390977482679 1.19115566587925e-06 0.0181377273243434 9.9117740435056 10.6248414352257 0.899348505893313 0.0770938529484848
AT2G36460_at 9.39280839747136 9.39619900181195 9.48204437673869 9.66039046271124 9.94029834404734 9.70632295113211 8.41598311965747 8.76968370603955 8.06086644040265 8.79869987604631 9.56485407067042 9.51862499514855 9.67451348070573 9.5791432155127 9.51341355117684 9.48239599652968 9.56834135061799 9.62442876870693 8.5089410215393 0.114009478233680 0.116306303469024 0.119590328689677 0.121150192782757 0.115745704509018 0.116024979873272 0.124758139458311 0.119108950923483 0.130303297176468 0.120711112889365 0.121178935801126 0.118566022490440 0.114009478233680 0.121961495077612 0.120912444436748 0.117516919035223 0.122482117333591 0.120940995858386 0.121921279368196 2 2 - 15304172 15304538 15304357.545 15303780 15305593 - gene protein_coding_gene FALSE TRUE AT2G36460.1 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT5G03690.2); similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT3G52930.1); similar to fructose-bisphosphate aldolase [Persea americana] (GB:CAB77243.2); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) 0.90657039669156 9.61158859205427 1.19398425083116e-06 0.0181796042031552 9.91029997565843 18.3564080655994 0.90657039669156 0.0796178247123282
AT3G47430_at 8.01090706644162 7.9348863190076 8.18889612668928 8.07861708852999 8.08103682446546 7.7590600177181 9.59620956025315 9.96307397814463 8.60262047254106 9.26742418565495 7.31726375370277 7.4033701187626 8.76126889865743 8.10783192940072 7.16911731532925 8.85947698345254 8.67296208160526 8.0071695107997 9.2760270038044 0.202431930133394 0.195566462815162 0.204537849086322 0.20115691531712 0.188505295605680 0.201448530060581 0.204031845802234 0.201950504684133 0.213000300716052 0.189920088553075 0.199103225358566 0.215347057003837 0.197697925040866 0.201040414342628 0.214014663854292 0.198066250702948 0.202292524207165 0.203801217085121 0.188505295605680 3 3|0 +|/ 17491872 17492636 17492358.7 17491588 17492777 + gene protein_coding_gene FALSE TRUE AT3G47430.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. similar to peroxisomal biogenesis factor 11 family protein / PEX11 family protein [Arabidopsis thaliana] (TAIR:AT1G47750.1); similar to Os04g0534600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053418.1); similar to Os03g0302000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049868.1); similar to Peroxisomal biogenesis factor 11 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95492.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) -0.930374848323696 -9.60291897792129 1.20461346011136e-06 0.0183402399301955 9.90478944997683 16.9945849366382 -0.930374848323696 0.0875935605926446
AT1G52190_at 9.22825747198706 9.37564733635698 8.239017738468 8.2874712448454 8.89597241834479 8.86213494876784 7.97151200045263 7.89820072494013 9.02381785089784 8.86837998574783 11.1193177947202 11.3120130329583 10.9383289027416 11.0869905892959 11.3794246916058 11.2023234581033 10.2358487906359 11.1925068552532 10.3559749432168 0.130967987329819 0.134844635746038 0.142294526562365 0.141999805702651 0.134637601508074 0.139327383631322 0.144318433955759 0.144382806653847 0.139575001733164 0.131228402961776 0.135513383827327 0.136118299667244 0.135615735337375 0.136859126784983 0.139335920120811 0.136058177108034 0.134482281459940 0.141368736866126 0.135503603128073 1 1 + 19441799 19442201 19442007.636 19438178 19442640 + gene protein_coding_gene FALSE TRUE AT1G52190.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32298.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.797515687649547 9.59896073468882 1.20950039480799e-06 0.0184134340105569 9.90227097175112 18.8319776643712 0.797515687649547 0.0302677662374854
AFFX-Athal-Actin_3_f_at 10.4425622130867 10.605445828508 11.1392925175382 11.3390214644017 11.0968746962604 11.0504580078298 10.4567274029161 10.7721519449670 10.747059475048 10.7605482480066 12.1442456237192 11.9722739840298 11.9530318416219 11.9070917812934 12.0794411554253 11.8517222004744 11.6101865058827 11.8454106300760 10.7317212308123 0.0962077341070996 0.0903613029113554 0.0961052954786268 0.0875269964615041 0.087585871065636 0.100492333575670 0.0878395315750105 0.0897585895488421 0.095881637377012 0.0886434655850628 0.090589629630129 0.0912811512375993 0.0862661373978748 0.0916975696968426 0.0904891610480265 0.0904116145250746 0.100814543311233 0.0870768844379529 0.0910718515880679 NA NA NA NA NA FALSE FALSE 0.88058615241558 9.59861883755012 1.20992351404573e-06 0.0184186656543182 9.90205336023684 22.1962509844073 0.88058615241558 0.0709460542461477
AT1G33600_at 9.20862736519838 9.68344991217208 10.2051537706463 10.2615414359109 10.7904132713267 10.3371714989367 9.78910180856088 9.73689296293306 9.08407147554698 9.23840829004578 10.5605400674103 10.7035470687758 10.7012215202776 10.3530099670285 10.0260821135754 10.414354714905 9.93239481203572 10.2620641465488 9.02896887233936 0.132225883683065 0.129865375781755 0.129961921903488 0.125041428975119 0.129682446243971 0.132249543694209 0.136366770514370 0.129752605950387 0.142250979272923 0.128738215107927 0.130393626056116 0.129406394913715 0.129018135660306 0.133610444933010 0.132093272143142 0.128545811565601 0.133948103102815 0.129747066310762 0.129026549910389 1 1 + 12181635 12182130 12181837.545 12180756 12182343 + gene protein_coding_gene FALSE TRUE AT1G33600.1 leucine-rich repeat family protein similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT1G33590.1); similar to H0402C08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86230.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 1.02302711866566 9.5921477666222 1.21796215177445e-06 0.0185398198743106 9.8979323722897 19.7446946768591 1.02302711866566 0.114371968409967
AT1G64710_at 6.8302076347477 6.99642306512925 8.5237931699838 8.87014167035112 8.31121787466797 8.41053376059067 5.75244191089428 6.17562256662581 6.2807057481605 6.08419731075839 5.56801528227813 6.30865171530021 5.77951212594574 6.13984199949937 5.46794203738406 5.29397455156495 6.28776597221505 5.70479186167194 5.53390552850857 0.286378592892039 0.286924140382246 0.290769273046345 0.296454757924301 0.30630771542292 0.294903551225988 0.279672831662218 0.279672831662218 0.283763806066198 0.286447816012521 0.287068645084507 0.282284638391236 0.280532881474933 0.279834877188243 0.279672831662218 0.280689561952694 0.288011476823976 0.279672831662218 0.286672116412844 1 1|0 +|/ 24049225 24049943 24049592.7 24048208 24050215 + gene protein_coding_gene FALSE TRUE AT1G64710.1|AT1G64710.2 alcohol dehydrogenase, putative|oxidoreductase/ zinc ion binding similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G32780.1); similar to ADH-like UDP-glucose dehydrogenase [Nicotiana tabacum] (GB:AAT40104.1); similar to Os10g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064203.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)|similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G32780.1); similar to Os10g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064203.1); similar to alcohol dehydrogenase [Nicotiana tabacum] (GB:CAA57446.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.97139511931954 9.58494375789247 1.22697931559947e-06 0.0186758521627395 9.89333956000427 13.3763384428113 0.97139511931954 0.100391151723448
AT1G73500_at 9.64594260946149 9.97011390832808 10.0327173451358 10.2925905322557 10.0293022937811 9.91980399939958 7.27826959939117 8.21730891714797 8.4321520857637 7.84574778988252 9.34202804254114 8.94498683226221 9.61844006745785 9.25297503313597 8.51275590923581 9.62877349899287 9.45633253426977 9.4347037386624 7.63633846331942 0.146557919936617 0.150407496405279 0.147802444155037 0.149012844835765 0.15109769722565 0.151142234319015 0.155277422312387 0.146873420172428 0.153908027879565 0.161537713427491 0.142379201749855 0.142379201749855 0.148355618217285 0.152514915004099 0.160920954162784 0.142645409285688 0.148390473305850 0.143381682633324 0.168587787790781 1 1 - 27643117 27643610 27643376.091 27642752 27644190 - gene protein_coding_gene FALSE TRUE AT1G73500.1 ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9); kinase member of MAP Kinase Kinase similar to ATMKK7 (MAP KINASE KINASE7), kinase [Arabidopsis thaliana] (TAIR:AT1G18350.1); similar to double MYC-tagged mitogen activated protein kinase kinase 9 [synthetic construct] (GB:ABF55669.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.29657823073770 9.5829358720862 1.22950541436428e-06 0.0187130724066244 9.89205850926568 18.0458997689751 1.29657823073770 0.178708233343900
AT3G18750_at 3.18128301868273 2.99854832007069 3.60911162023872 3.55753084965129 3.14397490845496 3.64883726213232 5.64319694939841 5.61328620248995 5.48196703491038 5.6145270539959 4.21487199217344 4.32498003139996 4.98482923721858 4.80024792413976 4.11774778536041 5.12192671897315 5.33384695357924 4.46460089234584 5.98900399835161 0.243635155587911 0.243022444087068 0.244710570913201 0.242658349892049 0.240893234723982 0.243412333537664 0.239280432214505 0.243280758691403 0.245361619294285 0.248508349989532 0.239280432214505 0.243439761322656 0.240401508896102 0.247372917921473 0.239280432214505 0.242002950690203 0.254969589301197 0.240881428916089 0.244385810704524 3 3 - 6454504 6454971 6454684.909 6454116 6457518 - gene protein_coding_gene FALSE TRUE AT3G18750.1|AT3G18750.2 WNK6 (Arabidopsis WNK kinase 6); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. similar to WNK7 (Arabidopsis WNK kinase 7), kinase [Arabidopsis thaliana] (TAIR:AT1G49160.2); similar to protein kinase [Fagus sylvatica] (GB:CAC09581.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to WNK7 (Arabidopsis WNK kinase 7), kinase [Arabidopsis thaliana] (TAIR:AT1G49160.2); similar to Protein kinase [Medicago truncatula] (GB:ABE83755.1); similar to Os02g0672800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047709.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.946999774864145 -9.57644617360593 1.23770859604578e-06 0.0188366871232208 9.88791517735497 9.10724487688226 -0.946999774864145 0.093486877163623
AT1G66230_at 4.84903666999046 5.05109533799158 3.91760624188644 3.82984459908595 4.81571066673119 4.87618294075536 6.94410572573007 6.17480602223879 6.82102796782736 6.58747651777554 6.55202961795312 6.03239503149983 5.8975988498843 6.2562945067471 5.67284004514452 6.1536176038031 5.17622882661309 6.08501231958816 7.0389039029767 0.24018195730747 0.237704400916497 0.267565136622666 0.258370948411967 0.246169441518495 0.254453237427221 0.247585356673291 0.245139676163708 0.256849892569896 0.237704400916497 0.240035774361199 0.241678494224677 0.239217850443541 0.247937909170824 0.243263110377744 0.237704400916497 0.249337208376634 0.237704400916497 0.253423739389121 1 1 + 24681330 24681880 24681623.636 24680817 24682078 + gene protein_coding_gene FALSE TRUE AT1G66230.1 MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-related transcription factor [Solanum lycopersicum] (GB:CAA67600.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.11623776145602 -9.55199088315734 1.26915704616359e-06 0.0193140319285176 9.87226269621284 11.4543259737249 -1.11623776145602 0.138876636290773
AT1G62430_at 9.08224384637578 9.41477917361982 9.59920874165893 9.52852184527579 10.0804760113884 9.70711204346236 9.26164896013359 9.13035404013755 8.2752822177651 7.81599048822715 9.55832234231031 9.04008955765723 9.52913771787659 9.45256251324225 9.11928607024013 9.02300338129249 9.00068725631948 9.00878467966338 7.48755424362282 0.135787879069296 0.134615437545602 0.132643105167260 0.131923902365181 0.134945002977677 0.136303592228968 0.135109264573209 0.135517396352981 0.136739199959531 0.137252136352636 0.132269327827141 0.133466305649597 0.130293752250554 0.135147636325729 0.136156888405681 0.130293752250554 0.164999004565432 0.141526404182156 0.151769840226197 1 1|0 -|/ 23109997 23111383 23110766.111 23109606 23113141 - gene protein_coding_gene FALSE TRUE AT1G62430.1 ATCDS1 (CDP-diacylglycerol synthase 1); phosphatidate cytidylyltransferase Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis. Identical to Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) (CDS1) [Arabidopsis Thaliana] (GB:O04928;GB:O48808); similar to phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT4G22340.3); similar to Os01g0758400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044302.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); similar to Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) (GB:O04940); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) 0.93172418099994 9.52777462425744 1.30115177766201e-06 0.0197996266006828 9.85670217095407 18.0135896692716 0.93172418099994 0.0902899983805013
AT3G15520_at 7.01504951684444 6.70097804712759 5.13883508618981 5.02942491802003 5.48037835927458 5.59430160898513 7.74887500120517 7.65742131290016 7.60504337040248 8.13060763554334 8.70692758355466 8.7909572456874 7.16802888430241 8.06119320185046 8.94438878216427 8.08134934300372 6.90532606569809 8.28363434254734 7.82500302730028 0.204069979770365 0.202709079016938 0.209812964906717 0.210221621070969 0.219275582822845 0.222056828637080 0.198181180126038 0.207220330013487 0.206329122001171 0.199859245869184 0.199452877304705 0.205961631117474 0.209641489481764 0.196872790944305 0.203656807553216 0.196872790944305 0.207032371933193 0.200922710686857 0.199057038033486 3 3|0 -|/ 5249779 5250787 5250361.111 5248936 5252513 - gene protein_coding_gene FALSE TRUE AT3G15520.1 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT3G01480.1); similar to Peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor (PPIase CYP37) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (p38) (TLP38) (GB:P82869); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.852835819858138 -9.52381625479783 1.30646409216934e-06 0.0198791576264487 9.85415286732653 14.2812964940766 -0.852835819858138 0.0628628675454847
AT2G34930_at 3.7396398483973 4.05448176683802 1.56920147561917 1.35147719208747 1.46928311797570 1.67143845263736 3.06950249837818 3.32514556130671 2.98054471951316 2.63055298475503 3.65397507297384 3.61985045630992 2.69024526020084 2.87337122381986 3.91472245082763 3.74742816294272 2.19097066631557 3.07286764319167 3.47783848558537 0.236495407967523 0.232232879205495 0.247117389114001 0.243365552575086 0.231270028498656 0.228972323446072 0.228501519833275 0.227395652478178 0.227395652478178 0.232870429074893 0.239993203021309 0.227395652478178 0.227395652478178 0.227965011865042 0.231917231669121 0.228312515382674 0.227395652478178 0.234478432373759 0.228787745336891 2 2 - 14744334 14744820 14744621.273 14744145 14746983 - gene protein_coding_gene FALSE TRUE AT2G34930.1 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT1G47890.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.920529444347613 -9.52057884314122 1.31082629373991e-06 0.0199442220592528 9.85206666890725 5.65630837100029 -0.920529444347613 0.0870018363720295
AT4G35480_at 7.68355488334338 8.1701480046603 7.8247828590538 8.02354499266056 8.42717143637666 8.56063312326455 6.54249412064937 6.70123941707039 6.64468348045768 6.2700516423321 7.23755235660118 7.14471392472454 7.64006310154691 7.72741377399504 7.08223827770353 6.99122232248134 7.07860014961016 7.400935530484 6.02753076018124 0.195701447909513 0.198806826700989 0.213339073482981 0.200071180100573 0.20019558474586 0.209458334208109 0.195439330161067 0.204185694766482 0.214004698572706 0.194973649798635 0.193439657693043 0.192539000165551 0.191446688621238 0.188628145605576 0.190880443022264 0.189213291838715 0.189873825070512 0.194061907412780 0.201038080513091 4 4 - 16852308 16852808 16852535 16852079 16852952 - gene protein_coding_gene FALSE TRUE AT4G35480.1 RHA3B (RING-H2 finger A3B); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA3b. Identical to RING-H2 finger protein ATL4L (RING-H2 zinc finger protein RHA3b) (ATL4L) [Arabidopsis Thaliana] (GB:Q9ZT49); similar to RHA3A (RING-H2 finger A3A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G17450.1); similar to zinc finger protein [Brassica rapa] (GB:ABK56013.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78080.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.954213899197184 9.5036262705486 1.33392758801669e-06 0.020294374324086 9.84112453955074 14.5426616332850 0.954213899197184 0.0977860445908737
AT1G16670_at 8.82535072998177 8.92489691804684 9.43420380187777 9.47258367182633 8.5337784222717 8.36784562816168 7.09961979852374 7.13183491095702 6.47113739086935 6.03739919070381 6.730657119659 6.67850504141879 6.37198050866555 7.35038175454722 6.10919458007944 7.22280456580763 7.20749088833128 7.03631568394591 6.11652389397121 0.240266134612738 0.235978951512559 0.237756956065120 0.240796805839473 0.235698676434656 0.244720008861482 0.238707711638139 0.235535152177313 0.258245171919794 0.247140265220013 0.240946620049863 0.247470203472345 0.242783395529407 0.235488364015273 0.235488364015273 0.245942461205426 0.245935535950486 0.244326939024203 0.243656863489569 1 1|0 +|/ 5698729 5699428 5699201.6 5697317 5699762 + gene protein_coding_gene FALSE TRUE AT1G16670.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G09010.1); similar to Os04g0619400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053898.1); similar to H0313F03.21 [Oryza sativa (indica cultivar-group)] (GB:CAJ86134.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.793370033807875 9.47855596457914 1.36890210392627e-06 0.0208251077070304 9.82488772500486 14.9971491150333 0.793370033807875 0.0345910099963773
AT1G70830_at 6.34676799493895 6.0211303113872 4.57007535963277 4.95720274423933 3.9521169808966 3.81631964701307 8.68244236432202 9.01291700516773 4.97326051090978 8.76138631910425 9.2200133557091 9.54888414142193 8.79069014191613 9.8220998119181 8.42131486037547 6.94455293280406 9.13061203524245 9.05775432191258 9.19447591524347 0.245246036027308 0.243157304597968 0.255737877082551 0.245685610855450 0.262717192325611 0.25529179616487 0.235498051868055 0.231822999484991 0.251312440822115 0.231822999484991 0.235174691464101 0.235211607932361 0.231822999484991 0.236927609402477 0.231914545481716 0.243919629399435 0.233271093091416 0.232045627176191 0.231822999484991 1 1 - 26713985 26714474 26714253.778 26713609 26715124 - gene protein_coding_gene FALSE TRUE AT1G70830.1|AT1G70830.2|AT1G70830.3|AT1G70830.4 Bet v I allergen family protein|MLP28 (MLP-LIKE PROTEIN 28) Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)|Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70850.2); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.983968225465943 -9.47316276229419 1.37655485011004e-06 0.0209401523798739 9.82138620192813 14.1748871085739 -0.983968225465943 0.107176864698593
AT4G31550_at 6.47616769522006 6.41330497639372 6.54391437918047 7.044102471426 6.84897748064145 6.6761852147026 6.57664843934094 6.74244545513465 6.6279205103487 5.58519994551697 7.60400915184272 7.6321882324044 7.36788515761237 8.11528173359976 7.29633661424115 7.52444001431748 7.13481773499584 7.20125482359357 5.23740446627026 0.179747355226965 0.179747355226965 0.186716016579262 0.187700096768056 0.183230816037173 0.197566809700054 0.184483197091277 0.18496109096518 0.194126180407882 0.212468133288235 0.181620605750841 0.183718645579532 0.179747355226965 0.184264777029547 0.187220898700359 0.184995246635916 0.182480455318522 0.179747355226965 0.211202653660370 4 4|0 -|/ 15290130 15291060 15290854.2 15289953 15291545 - gene protein_coding_gene FALSE TRUE AT4G31550.1|AT4G31550.2 WRKY11 (WRKY DNA-binding protein 11); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (WRKY11) [Arabidopsis Thaliana] (GB:Q9SV15;GB:Q8H1G1;GB:Q93YX0); similar to WRKY17 (WRKY DNA-binding protein 17), transcription factor [Arabidopsis thaliana] (TAIR:AT2G24570.1); similar to WRKY transcription factor 11 [Capsella rubella] (GB:AAS66778.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (WRKY11) [Arabidopsis Thaliana] (GB:Q9SV15;GB:Q8H1G1;GB:Q93YX0); similar to WRKY17 (WRKY DNA-binding protein 17), transcription factor [Arabidopsis thaliana] (TAIR:AT2G24570.1); similar to WRKY transcription factor 11 [Capsella rubella] (GB:AAS66779.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.946919143539612 9.47142740478689 1.37902708805703e-06 0.0209763810364355 9.8202588759766 13.3159024257739 0.946919143539612 0.096583367035429
AT2G29680_at 2.56281241642378 3.03756316644937 3.45086042922119 3.61078901170294 5.26718864494927 5.15061738144374 3.96316085579061 3.63737951585126 2.79917475879278 3.01427894837019 3.23925834175375 3.18398478438497 3.4166961228465 4.73263720072597 3.13154926882286 3.47394734860900 4.59317494260621 3.90761825142666 2.66821259343787 0.214680891819640 0.206452716287921 0.206452716287921 0.207263256869679 0.223485100143367 0.221101169657744 0.206908295866621 0.212970637379015 0.216642732068163 0.214105362103723 0.215078987286198 0.210142481240548 0.206452716287921 0.225452491123223 0.212565559508799 0.207473317838857 0.219559511856284 0.211770339525881 0.21156121589101 2 0|2 /|+ 12698509 12699560 12698957.333 12696626 12700101 + gene protein_coding_gene FALSE TRUE AT2G29680.1|AT2G29680.2 CDC6 (CDC6) Encodes cell division control protein 6 (CDC6). similar to cell division control protein CDC6b, putative (CDC6b) [Arabidopsis thaliana] (TAIR:AT1G07270.1); similar to Os01g0856000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044845.1); similar to putative cell division control protein 6 [Oryza sativa (japonica cultivar-group)] (GB:BAD82304.1); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.976135530323622 9.4600979271998 1.39528589532033e-06 0.0212222984678222 9.81289122199916 7.10358661915266 0.976135530323622 0.105362831955288
AT4G36990_at 8.29364351136656 8.22835582050042 9.2690910704782 9.03991198345235 8.23187028130505 7.28886792237755 5.17443181106612 5.28637069284759 4.81447163936857 5.5202531655711 5.50877817064579 5.64212060160331 5.79224544461635 5.91625140507022 4.90825971459174 6.66449661488805 6.62028762230768 5.36103562705974 4.77990057145708 0.231600096499257 0.233492741541632 0.237661063361376 0.237496276374418 0.23632354196639 0.232794634798332 0.231468261121351 0.233575316538475 0.242137244900413 0.229151269358005 0.231245562125691 0.231979407698362 0.231018944260052 0.242707510798603 0.228280224041035 0.228280224041035 0.233387913190117 0.234167360767838 0.23484427772787 4 4 + 17441122 17441661 17441379.727 17440287 17442145 + gene protein_coding_gene FALSE TRUE AT4G36990.1 HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. Identical to Heat stress transcription factor B-1 (AtHsfB1) (Heat shock factor protein 4) (HSF 4) (Heat shock transcription factor 4) (HSTF 4) (HSFB1) [Arabidopsis Thaliana] (GB:Q96320;GB:O23186); similar to AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62020.1); similar to heat shock factor [Nicotiana tabacum] (GB:BAA83710.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 1.23760539837853 9.45892323829632 1.39698350713693e-06 0.0212467221600455 9.8121265393824 13.0215143161226 1.23760539837853 0.169431854964971
AT2G45800_at 1.67379833054349 1.63086235520202 1.75091406496464 1.77923570160792 1.72532224761071 1.46384707371302 3.49301019471756 3.01724049566875 3.65095408308989 3.53542471299975 2.30113090479492 2.48797877889065 2.70421466743349 2.44120691935642 2.26160936060019 2.74965883923931 2.54115964574044 2.30786761262718 3.53977481363882 0.195414348086521 0.194716948309314 0.201636635048232 0.194192495354700 0.194192495354700 0.195052476829603 0.214829357883859 0.200787478351148 0.194192495354700 0.201726143339793 0.199518630116417 0.197487793760229 0.195395153623259 0.194501863726355 0.199136423093143 0.196120776626251 0.194192495354700 0.198665525337749 0.194192495354700 2 2|0 -|/ 18865269 18865962 18865501.4 18865015 18866263 - gene protein_coding_gene FALSE TRUE AT2G45800.1|AT2G45800.2 LIM domain-containing protein|zinc ion binding similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G61230.1); similar to LIM, zinc-binding; Zinc finger, RING-type [Medicago truncatula] (GB:ABE84732.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) -0.937464633774856 -9.4506053438577 1.40906830303480e-06 0.0214291107525532 9.80670771412331 5.09164774683425 -0.937464633774856 0.0943698176150605
AT4G02990_at 5.80651108351206 6.2040631837047 5.24707532631359 5.48912282842147 5.24454147823456 5.29127333076426 7.07963020962536 6.7013290885126 4.63546143977925 5.43163620624614 3.77879478573753 4.31674579346664 4.61336247472414 3.80150166793433 4.73017007030442 4.98937037968278 4.58640107592819 3.63253310989743 5.28335990044286 0.215260295186663 0.216791368684324 0.212409928104230 0.220522425485124 0.216045414319267 0.217436915294747 0.216582158827187 0.216311418155146 0.216724055864035 0.212409928104230 0.217454617248947 0.215709038725893 0.212409928104230 0.214519640617620 0.219254287555564 0.212960946825354 0.233062887344653 0.223923965871023 0.221290866021439 4 4 + 1323220 1323670 1323391.636 1321859 1324004 + gene protein_coding_gene FALSE TRUE AT4G02990.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G44020.1); similar to Mitochodrial transcription termination factor-related [Medicago truncatula] (GB:ABE94205.1); similar to Os05g0404000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055500.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.97029470642593 -9.44635946121037 1.41528056482568e-06 0.0215221715493040 9.80393885445525 10.5944078670688 -0.97029470642593 0.104110794650298
AT4G37310_at 8.48592679614965 8.51764805405096 8.55677650003096 8.67802023519966 7.8860077140986 7.56371484740798 8.95332288556696 8.77368652075742 7.67659274743758 8.8324950242299 6.68741424587742 6.91165077114238 7.3999728824616 7.33757358469315 6.34700082512073 7.60846518108444 7.85921760937554 7.37217810473517 8.66993828641491 0.179329988676595 0.175172596891162 0.179079066491926 0.180400776688412 0.173281676584214 0.184737248162229 0.176649181421623 0.175683399218399 0.182306744547227 0.173600392416739 0.174590665469196 0.180365289090725 0.185820826446869 0.185275380508234 0.191704061026723 0.173986832540418 0.184209079668765 0.184885421506963 0.172873593747866 4 4 - 17556161 17556574 17556366.636 17555921 17558887 - gene protein_coding_gene FALSE TRUE AT4G37310.1 CYP81H1 (cytochrome P450, family 81, subfamily H, polypeptide 1); oxygen binding member of CYP81H similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37330.1); similar to isoflavone 3'-hydroxylase [Medicago truncatula] (GB:AAQ20041.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.857045387706551 -9.4427376315799 1.42060317782086e-06 0.0216016919219440 9.80157545402671 16.2186093624522 -0.857045387706551 0.0674354294848316
AT2G23680_at 6.47852639064646 6.81843541644371 7.18478916395487 7.33418567724125 5.94898203165659 5.09770155608469 2.81320473261608 2.49298194723955 3.0415393541127 3.08053881558890 3.71197174274867 3.97156209098983 3.33141600772956 4.02575237454345 3.29208865763822 3.63080144051785 4.19304411069975 4.63785129659862 3.21985293254062 0.318081643053013 0.317105249789348 0.322751947901084 0.305014325696007 0.307809792331327 0.305671267377801 0.305443378558666 0.304947338222862 0.3051561977082 0.296786370093293 0.297898558157419 0.296738074790797 0.308468818455511 0.313301325694226 0.301320983681675 0.296738074790797 0.300553459820301 0.296738074790797 0.305915828730167 2 2|0 +|/ 10073346 10074191 10073719.9 10073243 10074535 + gene protein_coding_gene FALSE TRUE AT2G23680.1 stress-responsive protein, putative similar to stress-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G37220.1); similar to cold acclimation protein COR413-PM1 [Zea mays] (GB:AAO24629.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 1.23798070830020 9.44204998654737 1.42161617955684e-06 0.0216156740101618 9.8011265794966 9.00274486411739 1.23798070830020 0.170006152310512
AT1G78600_at 9.9764546725303 10.2880251655490 10.5335643352307 10.5557053584891 11.0647906709277 10.4082452052966 9.89162729799572 9.49044959199816 8.05971552766082 8.65465950776544 10.1366234982437 9.81473664842244 10.2558268126058 10.3536481830599 9.222564048735 9.67917944236186 10.2601419874803 9.98041651619288 8.62282138691925 0.102185309651799 0.101687822677695 0.104787190656560 0.101687822677695 0.101687822677695 0.103096032380611 0.103613819248147 0.105524253734533 0.133864170082926 0.108774602588316 0.105706008450717 0.101687822677695 0.101687822677695 0.101687822677695 0.111593647139083 0.102575461623479 0.110821593995292 0.107448492835642 0.120197385376127 1 1 + 29572783 29573501 29573132.273 29572080 29573752 + gene protein_coding_gene FALSE TRUE AT1G78600.1 zinc finger (B-box type) family protein Identical to Putative salt tolerance-like protein At1g78600 [Arabidopsis Thaliana] (GB:Q9SYM2;GB:Q8RWG4); similar to STO (SALT TOLERANCE), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G06040.1); similar to CONSTANS interacting protein 1 [Lycopersicon esculentum] (GB:AAS67368.1); similar to Os01g0202500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042327.1); similar to Os06g0152200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056834.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 1.12304860591182 9.438527463367 1.42681764057135e-06 0.0216933354072469 9.79882639642357 19.4804199287120 1.12304860591182 0.143704357051844
AT2G40140_at 8.57671797471206 8.65090965538434 9.24384773413118 9.20810719175321 8.16561236682402 7.92427430401366 5.33622155408057 5.79141248932796 6.06850827647495 5.01562907468697 5.5504164888534 5.70710571958422 5.33639687151125 5.71204128522589 5.34077551504234 5.80488320827976 5.45524146262965 5.55815912453165 4.69430537368737 0.266502261060934 0.262669338817791 0.268277922795794 0.270776456426948 0.263832078810653 0.271434486461203 0.265239055978323 0.261875082897384 0.272199657414428 0.272218313886881 0.261875082897384 0.261875082897384 0.261875082897384 0.261875082897384 0.261875082897384 0.261875082897384 0.270825255896868 0.265310233452099 0.272999594176631 2 2 + 16780863 16781341 16781071.636 16779151 16781735 + gene protein_coding_gene FALSE TRUE AT2G40140.1|AT2G40140.2 CZF1/ZFAR1; transcription factor|CZF1/ZFAR1 similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.922645765989228 9.43488887513869 1.43221211078759e-06 0.0217739207203038 9.79644904709915 13.2709420926486 0.922645765989228 0.0902915324469755
AT2G01610_at 0.956521271374896 0.941616537573017 1.33806351193960 0.968243721198097 1.27273170723944 1.75660386122258 0.54512052311283 0.881115648795457 0.78893225958321 1.18002414599450 2.79120701027209 1.93072583594601 2.18512272232171 2.74975524911754 2.13439650052738 1.99215754125011 2.35205868843928 2.68938364738554 0.427415106325486 0.238904329930796 0.230444981071378 0.251861753431857 0.230444981071378 0.234932007663807 0.233954797023799 0.239753919617975 0.230444981071378 0.242889603502563 0.230444981071378 0.230499238470689 0.236811162554941 0.232978913009535 0.237611796449578 0.240120800315198 0.23502137533301 0.246156949659795 0.236135218234028 0.237061055211564 2 2 - 274154 274625 274433.455 274123 274819 - gene protein_coding_gene FALSE TRUE AT2G01610.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G14890.1); similar to pectin methylesterase inhibitor isoform [Solanum phureja] (GB:ABG49144.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 1.02856380031280 9.43094410418136 1.43808545616293e-06 0.0218617751045889 9.7938700652988 2.65844779949458 1.02856380031280 0.120396035586946
AT4G04630_at 5.09908563722704 5.86027292934267 6.44714623349854 6.55692252013547 7.35366242048619 7.60101965851058 6.15822835413147 6.2152554124277 5.75743821294942 5.55316774263113 7.42150885862145 6.70438509184174 7.10020651533724 6.90235142661128 5.81620769813412 7.36409315423809 7.58198293946409 6.54598132162068 6.3048472520964 0.225251257610509 0.218514952592543 0.221779132917708 0.222539312939720 0.216469326645896 0.234711042320229 0.226300704918387 0.234954425247518 0.228692438672843 0.228666812973977 0.226499056964333 0.219942426099625 0.234139397418393 0.223689183233936 0.224809619297519 0.216219190930777 0.234022551295916 0.219935367050955 0.227527281447841 4 4 - 2332172 2332619 2332416.091 2331675 2332798 - gene protein_coding_gene FALSE TRUE AT4G04630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21970.1); similar to Protein of unknown function, DUF584 [Medicago truncatula] (GB:ABE91657.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 1.10712450735837 9.42893939248928 1.4410802399782e-06 0.0219058607279086 9.79255880953597 12.8121528265329 1.10712450735837 0.140152335988843
AT1G21460_at 8.40936475496835 8.85036674524143 7.51374278422972 7.38757476777421 8.39389038692292 7.63724420427326 8.64937985451034 8.8367009325461 5.41826707195757 7.30314402864419 4.04114099962824 5.14727039420396 4.94579247858328 4.57164003800252 4.88410512758108 4.17433282912809 5.70839517323328 5.62112567410801 6.13635771471058 0.286980587196939 0.280033919264843 0.290429457285997 0.283223148698134 0.27744593993101 0.296152254557118 0.282774904223693 0.279298483184386 0.295171808051008 0.281674118429237 0.281351032857786 0.27744593993101 0.283274313692579 0.287206592164647 0.290374773111477 0.280770671724094 0.309262903677027 0.286196970960253 0.282752544556431 1 0|1 /|- 7512283 7512675 7512494.222 7511839 7513350 - gene protein_coding_gene FALSE TRUE AT1G21460.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G10850.1); similar to Os05g0426000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055599.1); similar to senescence-associated protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92465.1); similar to Os01g0881300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044998.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) -1.17626881757271 -9.42627224736316 1.44507507838524e-06 0.0219651411914556 9.79081360527145 13.7961071926813 -1.17626881757271 0.156516798815962
AT2G15970_at 11.1661829940392 11.3364414585631 11.1014158657828 11.1572317119154 11.6939635454537 11.3359375580264 11.0330835164132 11.1247114009977 9.7494111272501 10.4294016013010 11.8404752257936 11.5370144562092 12.2005399938681 11.8975181025743 11.4849461107138 11.4412803205311 11.5586140886937 11.4920396690040 10.1507961204848 0.109546354352019 0.107006677035046 0.113692424190532 0.108978899374624 0.109516726930092 0.116445211950027 0.108501671687781 0.108681140987755 0.130730877561314 0.118356408884079 0.111407364503476 0.107457941153161 0.110239033751443 0.111732724924305 0.107006677035046 0.108560799789987 0.114468874970986 0.109631974781689 0.117684726658561 2 2|0 +|/ 6957276 6958032 6957483.5 6957170 6958274 + gene protein_coding_gene FALSE TRUE AT2G15970.1 COR413-PM1 (cold regulated 413 plasma membrane 1) encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. similar to stress-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G37220.1); similar to putative stress-responsive protein [Tamarix androssowii] (GB:AAT01418.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.864358103684727 9.41796144988714 1.45759996892453e-06 0.0221540619276840 9.78537073424303 22.1393325625333 0.864358103684727 0.0710750547538883
AT3G17820_at 7.76625953585136 7.64124369336069 7.17411142159682 7.3806996498981 7.43223592603714 7.84611231856964 5.08650196066632 5.40341269330427 5.00939157136182 5.19808585080617 6.22494266965442 6.83691100362875 5.87389570085292 6.27439734288423 6.47247371036564 5.80334798473783 6.0301773166479 4.99783608609418 5.24336817292591 0.211437489814171 0.211532725900556 0.209963749176577 0.214572934381633 0.214570265545649 0.20942294889449 0.219636632757898 0.221435175799757 0.2192993348807 0.209237456279855 0.209237456279855 0.212635486814960 0.214528773849557 0.210261770436565 0.216187247369631 0.215657229054687 0.210264721886495 0.216871654120712 0.226641962931838 3 3 + 6098709 6099377 6099047.455 6097420 6099601 + gene protein_coding_gene FALSE TRUE AT3G17820.1 ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-3 (EC 6.3.1.2) (GLN1;3) (Glutamate--ammonia ligase GLN1;3) (GS1) (GLN1-3) [Arabidopsis Thaliana] (GB:Q9LVI8;GB:Q5PNX0;GB:Q84W44); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT1G66200.1); similar to GLN1,4 (Glutamine synthetase 1,4), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G16570.1); similar to glutamine synthetase [Raphanus sativus] (GB:BAA04994.1); similar to Glutamine synthetase nodule isozyme (Glutamate--ammonia ligase) (GS) (GB:P32289); similar to Gln synthetase (GB:1804333D); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) 0.948950610028349 9.39625202443036 1.49087485776217e-06 0.0226583160882695 9.77111830969648 12.5735869458553 0.948950610028349 0.0994174173569323
AT3G04810_at 4.27958265456865 4.27451757435015 3.20914047944245 3.10999281408902 4.17127376526184 3.57385947960297 4.52068184161620 4.47710891247688 4.75649177366431 4.53017620259767 3.56618048067047 4.39396146553817 3.21409903540528 3.6516320137516 3.98792418311829 3.34558537413118 3.33852849733685 3.60469329263498 4.81986199885652 0.257613013660226 0.248726623660953 0.252213433785575 0.254645558743818 0.247679044707699 0.247154252864879 0.248203795752264 0.246201393947841 0.250019193514035 0.246920701578854 0.242911591534057 0.245628372441937 0.252627263064599 0.242911591534057 0.255882440953335 0.246916919010079 0.252871205094761 0.253576495598829 0.252133584283844 3 3 + 1320529 1321074 1320777.182 1317266 1321300 + gene protein_coding_gene FALSE TRUE AT3G04810.1|AT3G04810.2 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G54510.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G28290.1); similar to putative LSTK-1-like kinase [Oryza sativa (japonica cultivar-group)] (GB:AAR01739.1); similar to LSTK-1-like kinase [Lycopersicon esculentum] (GB:AAL04423.1); similar to NIMA-related protein kinase [Populus tremula x Populus alba] (GB:AAL79042.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.968128613351693 -9.39235969679595 1.49692718496591e-06 0.0227488024299269 9.7685576647768 8.12202079077411 -0.968128613351693 0.105074018425033
AT4G14420_at 8.62403787300213 8.87406025328661 9.0194259894132 9.29125251141686 8.70277286518112 8.05348314707852 6.052714005666 6.72594586024841 5.46009091457359 4.7642857162389 6.18928971310815 7.58201966537025 6.32954020248915 6.57548790179496 6.79336627359958 5.56459543983105 4.83673531352275 5.87288833030804 4.5356070886205 0.262720626567332 0.260592721291036 0.262591126530283 0.260950969744859 0.266823700342298 0.265835219652824 0.264622462386104 0.257239962042355 0.266226918632085 0.265540400982534 0.258231609878266 0.257239962042355 0.257239962042355 0.257239962042355 0.264192270076588 0.259337522235440 0.271331424128516 0.257239962042355 0.262740422834622 4 4|0 -|/ 8302195 8303708 8302773.222 8301942 8303911 - gene protein_coding_gene FALSE TRUE AT4G14420.1 lesion inducing protein-related similar to lesion inducing protein-related [Arabidopsis thaliana] (TAIR:AT1G04340.1); similar to ORF; able to induce HR-like lesions [Nicotiana tabacum] (GB:AAC49975.1); contains InterPro domain Surfeit locus 4-related; (InterPro:IPR011592); contains InterPro domain HR-like lesion-inducer; (InterPro:IPR008637) 1.24776995604015 9.37914962961635 1.51766699357909e-06 0.0230624676344278 9.7598551205737 13.7369540272353 1.24776995604015 0.174022716450028
AT2G04780_at 3.63177050210283 3.89696648287046 1.4583226291764 1.51367136492455 2.11252835610263 1.84581137681877 4.38362179651444 4.84278411766989 5.34050736319256 5.34921499442237 6.66098556300079 7.57023189757325 4.90915727891982 6.26885500546671 7.47995636045774 5.18484484250567 4.18455427247447 5.99816590508585 5.79512136740147 0.269871435041867 0.262625576504547 0.284775130952914 0.288881794903019 0.292029818589013 0.301983984673748 0.265945324525972 0.271991617430188 0.28537597085104 0.262625576504547 0.267076101375024 0.267139156167908 0.268193396381656 0.28890738135221 0.267751525014544 0.263595013780224 0.269418794586396 0.277310751901640 0.267089128773878 2 2 + 1677728 1678188 1677970.182 1676739 1678452 + gene protein_coding_gene FALSE TRUE AT2G04780.1|AT2G04780.2 FLA7 (FLA7) fasciclin-like arabinogalactan-protein 7 (Fla7) Identical to Fasciclin-like arabinogalactan protein 7 precursor (FLA7) [Arabidopsis Thaliana] (GB:Q9SJ81;GB:Q8LG01); similar to FLA12 (fasciclin-like arabinogalactan-protein 12) [Arabidopsis thaliana] (TAIR:AT5G60490.1); similar to fasciclin-like AGP 12 [Populus alba x Populus tremula] (GB:AAT37955.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.959528155343538 -9.37372666500711 1.52627085536675e-06 0.0231916856472977 9.75627718142593 8.72420547778467 -0.959528155343538 0.103161537872789
AT4G20890_at 8.70489309415839 8.8068146127818 8.92008863576452 8.9572611337047 9.35091254830503 9.06027055988885 8.60285825194056 8.45036422424753 6.74570563231448 7.49307649127311 8.64963825541799 8.77830656973237 8.33238896124532 8.42403355214646 8.56485617248203 8.01970887601576 8.07797876187707 8.1250962067333 7.17706980658369 0.199032807545454 0.199766732258398 0.201639726210046 0.202448586987426 0.204269769563277 0.201576084494294 0.201348547333374 0.201579416060267 0.240755721602742 0.209438152717667 0.202431440298521 0.196709503404593 0.203214747459534 0.196709503404593 0.20388563915986 0.199182401140071 0.20440504013026 0.204617585138425 0.206748162617966 4 4 + 11183272 11183795 11183490.818 11182103 11184083 + gene protein_coding_gene FALSE TRUE AT4G20890.1 TUB9 (tubulin beta-9 chain); structural molecule tubulin 9 Identical to Tubulin beta-9 chain (Beta-9 tubulin) (TUBB9) [Arabidopsis Thaliana] (GB:P29517); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB6 (BETA-6 TUBULIN) [Arabidopsis thaliana] (TAIR:AT5G12250.1); similar to TUB4 (tubulin beta-4 chain) [Arabidopsis thaliana] (TAIR:AT5G44340.1); similar to beta-tubulin (GB:AAA32757.1); similar to Tubulin beta-7 chain (Beta-7 tubulin) (GB:Q41784); similar to Tubulin beta-3 chain (Beta-3 tubulin) (GB:Q40665); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.83189214151645 9.37040566595785 1.53156585937876e-06 0.0232706116674008 9.75408451612597 16.6117419973556 0.83189214151645 0.059822117422827
AT1G11170_at 4.06073070727863 3.81861547508865 4.34903828761719 4.39895496237911 4.91524860846869 5.10952367193176 3.08683570985049 3.01171239600947 2.89712583697866 2.91947925614346 3.25809106332114 3.31443575773271 3.30105636918094 3.2729193777964 3.28227379928185 3.00567513640380 3.66741689632042 3.50167242662831 2.83285243547429 0.228433723024324 0.225327976886883 0.234009582939237 0.239253743188635 0.237964913031004 0.232865369140429 0.229325791196565 0.239034144635092 0.229756465441755 0.228527081141835 0.225374198549340 0.225136800885075 0.235653709934984 0.230550576227463 0.232182164985830 0.225136800885075 0.225136800885075 0.225136800885075 0.229247209980143 1 1|0 +|/ 3743154 3744314 3743702.667 3740818 3744675 + gene protein_coding_gene FALSE TRUE AT1G11170.1|AT1G11170.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61240.3); similar to putative lysine ketoglutarate reductase trans-splicing related 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD62500.1); similar to Os07g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060006.1); similar to Os06g0731900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058667.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.820503952171718 9.34049355715693 1.58016316225908e-06 0.0240074189242021 9.73428203253594 7.19813003376067 0.820503952171718 0.0559418500497325
AT2G25590_at 7.42491119943405 7.19668354945462 8.01724787401653 7.63902837505401 8.9083673821369 8.18962942308022 5.17058027542676 5.31591436908789 6.73222207404681 6.80795209760505 7.10924642000924 7.12940600992366 7.70096081326352 7.64899288961705 6.64942561155623 8.33024736614952 7.92136763523459 7.39547516178971 7.87423133746094 0.189142426507129 0.18920403736797 0.203230508622597 0.188635811112307 0.195746669317201 0.194773152472428 0.205426885515263 0.209364575497089 0.198362555744132 0.190628580463542 0.192654376455005 0.190258933280966 0.185931424048058 0.196178859210844 0.192965548729009 0.189376254060895 0.186088946318090 0.193904375538598 0.184716518523132 2 2|0 +|/ 10899177 10900716 10900216.222 10898373 10900850 + gene protein_coding_gene FALSE TRUE AT2G25590.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G32440.2); similar to Agenet [Medicago truncatula] (GB:ABE92607.1); contains InterPro domain Agenet; (InterPro:IPR008395) 1.12952549197988 9.33713275990015 1.58572671599718e-06 0.0240903602694292 9.73205110874226 14.5446830100350 1.12952549197988 0.148145719147536
AT1G68130_at 4.62594238064376 4.98595455147079 4.5898578356231 5.17907924402537 6.07842005088264 6.43187286664212 3.61497649029983 3.68890346718505 2.43760073819960 3.24007971771356 4.10973677141032 4.44145608592919 3.27454222732634 4.0406850380683 3.17634836567771 3.9716971288085 3.97397814816771 3.86387705956654 3.46573057517863 0.235772245864153 0.231578156585973 0.227627585682141 0.228710269096857 0.227627585682141 0.238442296430711 0.227661993878901 0.230868967753447 0.232173526762815 0.233988255860139 0.228395196293541 0.228431005397455 0.227627585682141 0.227627585682141 0.242234636467956 0.227627585682141 0.240679973879962 0.243199524960688 0.227627585682141 1 1 + 25537401 25537912 25537644.818 25535907 25538249 + gene protein_coding_gene FALSE TRUE AT1G68130.1|AT1G68130.2 ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14); nucleic acid binding / transcription factor/ zinc ion binding|ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14) similar to ATIDD16 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 16), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G25250.1); similar to Os09g0449400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063321.1); similar to putative zinc finger protein ID1 [Oryza sativa (japonica cultivar-group)] (GB:BAD37964.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 1.07479985149109 9.33702967232046 1.58589770449109e-06 0.0240913720289241 9.73198265919143 8.35154775092154 1.07479985149109 0.134847756599830
AT1G15470_at 7.2696558149278 7.36390358856042 6.40599778429027 6.56726598003063 6.19686385404393 6.33395398150114 7.75250861755466 7.63786309219814 6.36254743826414 6.72421399172257 6.30160236185748 6.70708790442168 5.42389098917022 6.12006784361566 6.5592370374094 6.05643965722734 5.43248593483845 6.36487852791215 6.65620444708128 0.205220711495945 0.205508332116056 0.211313654491515 0.202314724292678 0.208769636662250 0.207149726818590 0.206000209392880 0.202314724292678 0.205446168587745 0.202314724292678 0.209970657905936 0.202314724292678 0.213930859817336 0.210446694893825 0.203677187850397 0.203606054585484 0.208597795618329 0.208310122082732 0.216035930351077 1 1 + 5316907 5317595 5317329.091 5315502 5317858 + gene protein_coding_gene FALSE TRUE AT1G15470.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); similar to Os02g0205400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046249.1); similar to Os06g0598900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057997.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.795119860988273 -9.30502323936067 1.63996273169759e-06 0.0249110338944863 9.71067520017319 13.2918515430113 -0.795119860988273 0.0447363454845875
AT1G77690_at 4.33297007335258 4.51291239829273 3.92575617142203 4.62045101462643 6.39257652761241 5.39355663067684 5.26533587564417 5.54242901148194 2.15017882359502 2.93111519686807 5.53340931402098 6.80905188013574 6.85432959846154 6.30902914405007 5.23299285420989 5.43251548972591 5.157918168499 5.49059593591876 4.33251689262832 0.261397403411314 0.250596657884886 0.254589451042210 0.248857804865818 0.255523124288037 0.261142195225769 0.257689484802738 0.252701940672548 0.272148555637183 0.256754407445511 0.251999179067337 0.248857804865818 0.253386031446511 0.250581509506001 0.254674787230191 0.250210912829732 0.255512342982819 0.256258840670009 0.256097625261433 1 1 - 29206167 29206853 29206603 29205835 29208234 - gene protein_coding_gene FALSE TRUE AT1G77690.1 amino acid permease, putative Identical to Auxin transporter-like protein 3 (AUX1-like protein 3) (LAX3) [Arabidopsis Thaliana] (GB:Q9CA25); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT5G01240.1); similar to AUX1 (AUXIN RESISTANT 1), amino acid permease/ transporter [Arabidopsis thaliana] (TAIR:AT2G38120.1); similar to Auxin transporter-like protein 5 (AUX1-like protein 5) (MtLAX5) (GB:Q8L883); similar to Auxin transporter-like protein 3 (AUX1-like protein 3) (MtLAX3) (GB:Q9FEL6); similar to auxin influx carrier [Lupinus albus] (GB:CAJ84440.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 1.44210828674442 9.29552925223766 1.65638078599639e-06 0.0251587677584991 9.70433354143742 9.49345709746775 1.44210828674442 0.218200008280547
AT1G67660_at 7.98653778545202 8.24649373079883 8.2267103459233 8.08527270825625 8.59584535745775 8.15512124056793 7.5023880289776 7.1535490172303 5.60397639908173 6.2920212523603 7.37146803721781 7.49800994444043 7.46748027058725 7.59731171174709 7.57489809022905 7.15659096986293 7.55096095316556 7.11533723615254 6.13901193161064 0.189711354315210 0.190032799426673 0.196940799208647 0.203002628489442 0.200672997920416 0.195756952391488 0.192260731221040 0.19436016706166 0.220419230840250 0.197586909858191 0.196131646905882 0.189711354315210 0.197341402601873 0.189711354315210 0.198205935959789 0.189711354315210 0.193020277902034 0.202103476321216 0.202495972959853 1 1 + 25368150 25368706 25368396.636 25367198 25368892 + gene protein_coding_gene FALSE TRUE AT1G67660.1|AT1G67660.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13810.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05466.1); contains domain no description (G3D.3.90.320.10); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992:SF3); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992); contains domain Restriction endonuclease-like (SSF52980)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13810.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05466.1); similar to Os08g0236700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061316.1); contains domain no description (G3D.3.90.320.10); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992:SF3); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992); contains domain Restriction endonuclease-like (SSF52980) 0.974166281547198 9.28478124277133 1.67518224821958e-06 0.0254426679859589 9.69714245175958 14.7080782831794 0.974166281547198 0.109928281251299
AT2G21640_at 3.25587161995437 3.01705442881413 3.23124290301924 3.27774395913052 4.2453656728853 4.20095438929091 2.54867523936338 2.92375727469145 2.90085064070064 2.88435769417184 3.99637924323917 3.98262990999101 3.39285310527355 4.2755470490995 5.06416055878057 3.80285237116612 3.91411137433801 4.03715175324307 3.57802948800838 0.201065726519417 0.202284825483130 0.203375181068928 0.207964490773156 0.215414989728226 0.206689586076464 0.201339414734508 0.205685171086653 0.210562011647458 0.206183183357100 0.211506551995515 0.202104417313807 0.202782252834361 0.201734976450100 0.219942079300584 0.201065726519417 0.20899140628397 0.204008803500885 0.209044852955151 2 2|0 +|/ 9262065 9262501 9262269.4 9261539 9262705 + gene protein_coding_gene FALSE TRUE AT2G21640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05570.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39235.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05323.1); similar to Os03g0724500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051122.1) 0.869809243361707 9.27834642061257 1.68654902592932e-06 0.0256136200567885 9.692831154158 6.92722815836116 0.869809243361707 0.0777504569404638
AT1G68540_at 5.46768640908296 5.29643977599344 4.03164231344699 4.38605765990838 5.06280585347714 4.82230170885655 6.65936420007845 6.3760225656805 4.47329735243392 5.22924717729841 4.06398806268171 4.35684111227801 4.53252869897349 4.90744398447035 3.96737927253282 4.05895994000259 4.82703688023379 4.37216918376628 4.83822002563558 0.230062887419911 0.229203555890729 0.228004178588175 0.224805089492250 0.216362506559337 0.223393721207357 0.22141014704031 0.226350098570487 0.225944048440326 0.219854321281706 0.216362506559337 0.223982994103379 0.221198467792405 0.217258728046021 0.217460985979115 0.216362506559337 0.218591010979695 0.218947198531048 0.219424035752085 1 1 + 25724201 25724872 25724468.727 25723689 25725028 + gene protein_coding_gene FALSE TRUE AT1G68540.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G25460.1); similar to dihydro-flavanoid reductase-like protein [Zea mays] (GB:AAK52955.1); similar to Os01g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041904.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.917652240187579 -9.27326842051704 1.69557793135364e-06 0.0257490464655363 9.68942574394795 9.87914751597723 -0.917652240187579 0.0936832301662172
AT3G50340_at 5.51702990493523 5.65922087137708 4.93174544428395 5.21389490244853 6.00568774364619 6.21667886562397 4.90772989699473 4.99491033706965 5.84012883783688 4.81526979487818 6.7556047065474 7.6975158033001 6.9445667873535 6.73334143301326 8.24780955054426 7.33046642991615 6.71355400868447 6.40887990415182 6.5743780614432 0.184832552745396 0.181370478897504 0.195992303406508 0.182232945723066 0.189769869824997 0.193791320176465 0.188126564346659 0.200372874856031 0.199251406826726 0.189256929970963 0.181965772138565 0.187957663071757 0.186312850795550 0.183086720830505 0.206312409605279 0.183941584660017 0.200989209335798 0.185266403002050 0.187761066876035 3 3 - 18676315 18676887 18676605.091 18676076 18677654 - gene protein_coding_gene FALSE TRUE AT3G50340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G67020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09363.1) 0.841493708146303 9.27079750856871 1.69999021462813e-06 0.0258143514091281 9.68776768583744 11.8544753587932 0.841493708146303 0.0674567590896462
AT1G20696_at 10.4829621493926 10.3130869076562 10.7280397474032 10.4698673058281 10.8214411416888 10.6696739760517 9.82574431799665 9.72606879959484 8.99721881070975 9.13586510662484 10.0099711950330 10.0296559834336 10.2884835140198 10.3095468397229 9.97640383766016 10.1018141007347 10.224361281546 9.50745557463527 8.82578141438635 0.080517448099378 0.0788365051405275 0.0843891218554676 0.0837947467778724 0.0799374098218568 0.0848862200003174 0.0822160129161792 0.0805838748513714 0.0901754581886177 0.0824912155921169 0.0788365051405275 0.0801193561211668 0.0788365051405275 0.0826987184636992 0.0788365051405275 0.0789193517074977 0.0837661085253401 0.0788365051405275 0.0788365051405275 1 0|1 /|+ 7179990 7180681 7180304.286 7179442 7181489 + gene protein_coding_gene FALSE TRUE AT1G20696.1|AT1G20696.2|AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); transcription factor|HMGB3 (HIGH MOBILITY GROUP B 3) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB2 (HIGH MOBILITY GROUP B 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20693.1); similar to high mobility group protein [Solanum tuberosum] (GB:CAA05365.1); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071)|similar to HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis thaliana] (TAIR:AT1G20693.3); similar to high mobility group protein [Solanum tuberosum] (GB:CAA05365.1); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.827481548012054 9.2627993583466 1.71435778890179e-06 0.0260308086666847 9.68239612315257 19.9007355355791 0.827481548012054 0.0620296787604854
AT3G17640_at 3.88654973702168 4.85369255245686 2.59474892736614 3.34448096728774 3.60984129052447 3.99959313849631 6.8584057408248 7.17080066637038 6.06413076452796 6.68453933951164 6.24519678204465 6.17068848533112 5.49576167310577 5.97344379713431 5.79923114452109 6.03103138180748 5.08384552322577 5.73192241747129 6.70169637433608 0.220818358471575 0.215967006281665 0.21751877832902 0.225388167417939 0.213392408563389 0.219792442411757 0.220682929076658 0.223374905567701 0.220813539893099 0.226591626081108 0.210646298485332 0.212526627546949 0.225129200859883 0.218256615061902 0.213283979936138 0.210646298485332 0.231358954138755 0.216439963079472 0.212445705760781 3 3 + 6033021 6033502 6033288 6032399 6033589 + gene protein_coding_gene FALSE TRUE AT3G17640.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G03440.1); similar to putative leucine-rich repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59431.1); similar to Os05g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055516.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.48613071773074 -9.2524972104919 1.73305799703147e-06 0.0263130195689289 9.67546692073357 10.6896869492296 -1.48613071773074 0.228730902952990
AT2G39190_at 6.70935738865665 6.6143237212965 6.51082575582255 6.63046034501153 7.53080842237391 7.45369229385683 7.73204774465398 7.12761027990335 4.4163462276974 4.08452243423918 5.33467434176803 5.5358216967038 6.44557973346972 6.27917877872588 6.81710235120534 5.94369653372934 6.0511370354076 5.84063133012119 3.75320659137336 0.219031817800805 0.216688546290523 0.21906723064243 0.210670447648011 0.207875528921661 0.210095373523860 0.212250983364613 0.209551780332411 0.227078012411835 0.213945144374918 0.214968400206835 0.209898323343077 0.218592951389808 0.212774801058208 0.215204153517360 0.210069822342306 0.217999417851296 0.221113671513828 0.212487942396975 2 2|0 +|/ 16358424 16359709 16359041.5 16357046 16363041 + gene protein_coding_gene FALSE TRUE AT2G39190.1|AT2G39190.2 ATATH8 (ABC2 homolog 8) member of ATH subfamily similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G71810.1); similar to Os02g0805800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048444.1); similar to putative ubiquinone biosynthesis protein ubiB [Oryza sativa (japonica cultivar-group)] (GB:BAD19381.1); similar to Putative ABC transporter [Oryza sativa] (GB:AAK98701.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147)|similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT3G24190.1); similar to Os02g0805800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048444.1); similar to putative ubiquinone biosynthesis protein ubiB [Oryza sativa (japonica cultivar-group)] (GB:BAD19381.1); similar to Putative ABC transporter [Oryza sativa] (GB:AAK98701.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) 0.965948947338315 9.24758167082955 1.7420581966986e-06 0.0264479275422782 9.6721566576794 12.0964754820693 0.965948947338315 0.108712958942495
AT1G74590_at 6.8616857943272 7.57143623759508 8.27898204679975 7.68564169251376 5.57462977087684 5.2296961601018 1.27319298777928 1.61035595723249 1.31988832333442 1.31391982000303 1.4620641843784 1.39562551988640 1.82972177268743 1.81962639083779 1.71251550284384 1.74186610713113 1.91812805952784 1.33826200060599 1.85665806398193 0.339108107771681 0.312771807266976 0.312060799033223 0.316853328271539 0.321640248165354 0.320778246035665 0.288712458978132 0.295079452383064 0.290077041336482 0.293351980767386 0.292273562387313 0.29742047870514 0.292284068175467 0.292485211512817 0.302323260617653 0.291490373158342 0.314396565066367 0.298153059509555 0.288712458978132 1 1 - 28027551 28028172 28027837.727 28027288 28028387 - gene protein_coding_gene FALSE TRUE AT1G74590.1 ATGSTU10 (Arabidopsis thaliana Glutathione S-transferase (class tau) 10); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU9 (GLUTATHIONE S-TRANSFERASE TAU 9), glutathione transferase [Arabidopsis thaliana] (TAIR:AT5G62480.1); similar to glutathione S-transferase 12 [Capsicum chinense] (GB:CAJ13709.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 1.25923689823521 9.2458457092756 1.74524875451477e-06 0.0264946213422888 9.67098698152653 7.08522671157518 1.25923689823521 0.180546408167895
AT1G71840_at 8.27681516438606 8.03832473627548 8.26384201459835 8.10344296236266 7.54462010623231 7.27351493281454 8.60042642098611 8.64210623265344 7.12119350687444 7.1783980587478 5.61576647233523 5.84976230917381 6.25995593730105 5.53396687531951 6.21761050438745 6.07504270491677 6.41632194359834 6.13185161855926 7.0130817145891 0.236448012084101 0.232619129538459 0.237799893212615 0.23373196551787 0.231853608882151 0.233321287285132 0.241298172084672 0.233577838854592 0.23498130041559 0.229668069317916 0.233199966053546 0.233114988976667 0.232849843406495 0.234787790473687 0.231918277165782 0.229420703081721 0.23256968790402 0.235825593045029 0.229274302461509 1 0|1 /|+ 27027354 27027961 27027801.556 27025880 27028213 + gene protein_coding_gene FALSE TRUE AT1G71840.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to putative an (GB:AAK14409.1); similar to Os03g0685600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050927.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.842376382805748 -9.24417537502937 1.74832466053229e-06 0.0265395683468801 9.66986121357917 14.6512661825066 -0.842376382805748 0.0687531961974697
AT1G79260_at 3.83370773980919 3.80928165607269 2.94754995616613 3.41559758891963 3.18381581607784 2.76878638997716 5.09211633271825 5.44761958886929 3.52754076727977 4.01393988101859 3.18639239287352 3.30421852244458 2.97958040566537 3.16680599793196 3.20761773682392 3.27220453626166 3.43613422445948 3.00460300939566 3.78651225001586 0.214890370326713 0.206201564428053 0.211649199356122 0.200893267658614 0.206352055438167 0.204123923836645 0.227419543089380 0.212341048127220 0.203484219141656 0.210419635482906 0.202369039249408 0.19966903705459 0.199674578443946 0.204401432348113 0.19966903705459 0.199903765700895 0.207201135574677 0.200389062001982 0.202888304845334 1 1|0 +|/ 29818234 29818898 29818455.7 29818137 29819202 + gene protein_coding_gene FALSE TRUE AT1G79260.1 Identical to Uncharacterized protein At1g79260 [Arabidopsis Thaliana] (GB:O64527); similar to hypothetical protein MBP_91N22.4 [Musa balbisiana] (GB:ABF70108.1); contains domain FAMILY NOT NAMED (PTHR15854); contains domain gb def: YUP8H12R.14 protein (At1g79260/YUP8H12R_40) (PTHR15854:SF5) -1.02402346056077 -9.24380109324438 1.74901470084966e-06 0.0265482941441971 9.66960891419407 7.29765550157799 -1.02402346056077 0.124587004323677
AT4G22530_at 4.34772786183907 4.73430030722949 6.52206306991654 6.9057713195265 4.06142358505548 3.94310339899551 3.08083109643666 3.26120199581544 4.34697903338359 3.36312514592415 4.48421415278052 4.17622345592952 3.40931712886045 4.16063377821624 4.09060899267955 4.31264984170376 3.71608398731114 4.23071883954635 3.37455283826878 0.27448966819366 0.269866258836303 0.288507328074103 0.290887222953748 0.273476675456662 0.280509972889705 0.276668667240289 0.269866258836303 0.281324700535888 0.284237582386132 0.277312322724126 0.271431862328705 0.27305865411809 0.273716372949350 0.275845205578534 0.269866258836303 0.274840632567477 0.270221379799301 0.275950298206633 4 4 - 11859264 11859712 11859535.909 11859015 11860219 - gene protein_coding_gene FALSE TRUE AT4G22530.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT5G10830.1); similar to embryo-abundant protein EMB-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89030.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.939872813823138 9.24091669378721 1.75434238161615e-06 0.02662740866817 9.66766405718772 8.49077380167881 0.939872813823138 0.101381620306939
AT4G01870_at 5.06628851393414 5.41822011154592 7.66534659062716 7.75706626988611 4.27403975843169 4.91109978917915 4.70829780050433 4.38007988855705 3.63809040961598 3.84254080527303 4.35895763283632 4.74932548796378 4.03259697778191 4.60180401184355 4.40103080947873 4.95243600639637 4.68328340772623 4.75636775026436 3.51496719007576 0.259710297513226 0.249883071557117 0.265103627200171 0.277288469295449 0.242230085230278 0.246250731330961 0.249719181318663 0.25188431824541 0.256967497824805 0.248777434590628 0.25649242723581 0.242230085230278 0.242230085230278 0.254323698895377 0.257286599998613 0.242419069323124 0.24715161828828 0.253353980808885 0.251948986456169 4 4 - 808481 808934 808754.273 808376 810446 - gene protein_coding_gene FALSE TRUE AT4G01870.1 tolB protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21680.1); similar to putative protein [Gossypium hirsutum] (GB:AAT57937.1); similar to Os03g0840200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051846.1); similar to Os07g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060406.1); contains InterPro domain TolB, C-terminal; (InterPro:IPR011042); contains InterPro domain WD40-like Beta Propeller; (InterPro:IPR011659) 1.08022115780524 9.23696682069674 1.76166655390542e-06 0.0267368132886226 9.66499930935409 9.63864220476219 1.08022115780524 0.139074035465276
AT4G34650_at 2.66951932057384 2.47556467784284 2.28759079858052 2.22849082093479 2.13578796147788 2.10091933811294 5.02256939226251 4.96160800011244 3.05211128064804 3.52410710003467 3.71626754351572 3.93153310255427 3.17496904957716 3.64419525282321 3.91591230410112 3.04922181021679 3.2845180554335 3.50757969839879 3.87975941002899 0.227799234764482 0.228724246085412 0.227438104384742 0.231313542176537 0.232562967603812 0.237616653105663 0.269040780729089 0.251523324344902 0.233411538000103 0.235399906135927 0.230219693953720 0.231019265420834 0.230957669889371 0.236867544016330 0.232764108621725 0.227438104384742 0.241108441165219 0.232631470139885 0.239149088719711 4 4 + 16543456 16544488 16543967.818 16542382 16545126 + gene protein_coding_gene FALSE TRUE AT4G34650.1 SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase squalene synthase, catalyzes the first committed step in sterol biosynthesis similar to SQS1 (SQUALENE SYNTHASE 1), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34640.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449) -0.775709723040517 -9.22354057134998 1.78681085015932e-06 0.0271166414620178 9.65592863035464 6.49193155489462 -0.775709723040517 0.0371335643447479
AT3G21110_at 4.70094316160233 5.18618804071217 4.31036314784268 4.35010542047876 4.43323269395754 4.44966850778064 6.22632555356076 6.30830407046697 5.03836731364623 5.08637665728968 4.05129094542947 4.51737468499029 4.24345254683428 4.29858730184264 4.72037631071061 4.9067462426207 4.67874397484418 4.11638697343699 4.85731572182682 0.219502971633968 0.212164837882141 0.210057601015279 0.214970787659613 0.210057601015279 0.217148668749795 0.217807407737587 0.214261388694061 0.217161129771017 0.212781781276793 0.211938517431903 0.211673389975919 0.218286439863514 0.214602675503498 0.212130312440592 0.215241933697803 0.215210224199905 0.214728232736667 0.211522504081352 3 3|0 -|/ 7402715 7404141 7403575 7402487 7405647 - gene protein_coding_gene FALSE TRUE AT3G21110.1|AT3G21110.2 PUR7 (purin 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.|5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone. Identical to Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor (EC 6.3.2.6) (SAICAR synthetase) (PUR7) [Arabidopsis Thaliana] (GB:P38025;GB:Q8RXX4;GB:Q9LJC1); similar to SAICAR synthetase (GB:AAA16231.1); contains InterPro domain SAICAR synthetase; (InterPro:IPR001636) -0.885998894534793 -9.21084334443628 1.81094719907626e-06 0.0274811237459822 9.64733227781995 9.71346120963834 -0.885998894534793 0.0854884178724412
AT1G48210_at 7.5317465679031 7.40191643184127 7.02501171854845 7.67649106954034 6.06390354550255 5.87627722620718 2.66401637094418 2.54611313525174 3.27523387166526 2.48379679889424 2.79691933646816 3.13017551893439 2.84793574429052 2.84235680216458 3.32451216766094 3.0462432730266 3.86226255128168 3.56610833796709 2.61116896433365 0.218468820328332 0.222377431485305 0.231380514061961 0.232074525913344 0.216700582211268 0.217613006580285 0.222353424069428 0.216179217069628 0.214594617446274 0.220762325525765 0.213925688905455 0.209039902843959 0.209039902843959 0.222239539686612 0.212692655681103 0.209039902843959 0.220778554525543 0.216455521722146 0.211390247623301 1 1|0 +|/ 17804113 17805336 17804400.8 17802132 17805656 + gene protein_coding_gene FALSE TRUE AT1G48210.1|AT1G48210.2 serine/threonine protein kinase, putative similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17410.1); similar to Pto kinase interactor 1 [Lycopersicon esculentum] (GB:AAC61805.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.00573521748721 9.19455391281553 1.84242961320045e-06 0.0279570269507037 9.63627794304874 8.83174988893667 1.00573521748721 0.121185971101902
AT3G57770_at 4.57699223711276 4.37161894379528 4.94813358807974 5.15597454061498 6.39209401999914 6.05713957256469 4.7237580153421 4.48053843885637 3.03123133871987 3.24937394047662 3.66431243239056 3.04675529173834 4.02730820606879 3.9179207878957 3.23122808410170 3.36884592321803 5.22515271969742 3.55736941162251 2.94025862234012 0.298160699310889 0.299900752577176 0.298557489373859 0.295174259448718 0.314797743572365 0.301467276345752 0.302302261956530 0.302194538753885 0.304754691973357 0.295174259448718 0.295174259448718 0.29561496603096 0.295174259448718 0.295796635247857 0.298374603833008 0.295174259448718 0.299625996508727 0.295174259448718 0.295174259448718 3 3 + 21409091 21409488 21409333.222 21408519 21409830 + gene protein_coding_gene FALSE TRUE AT3G57770.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57700.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to Protein kinase; Type I EGF [Medicago truncatula] (GB:ABD28548.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.89067441405872 9.19030821277203 1.85073211227065e-06 0.0280811583394826 9.6333919220252 8.50252262334755 0.89067441405872 0.0876836227627854
AT3G43160_at 3.87802748366290 4.29432028638791 3.91990902974682 3.94165389404602 2.68939818247228 2.87063086052014 3.69454114590716 3.95258015554095 4.49558908294985 4.07649496203376 2.97130714211249 3.18841862468794 3.00198964133718 3.60689716631668 2.91267906710441 3.39480298507069 2.57365820471843 2.68901495479260 4.15116969660065 0.279417777378576 0.292964213313833 0.27573549161346 0.281024184773309 0.278015898505445 0.282104403159384 0.2845738265837 0.283572467205137 0.281916400747518 0.283110175179805 0.292635116582497 0.284386015521569 0.284329877168847 0.27573549161346 0.278727004500315 0.282079044701807 0.286375558811327 0.281433416113311 0.279528031878128 3 3|0 +|/ 15178006 15179189 15178675.778 15177549 15179213 + gene protein_coding_gene FALSE TRUE AT3G43160.1 MEE38 (maternal effect embryo arrest 38) -0.899103941719473 -9.18898460770653 1.85332869679509e-06 0.0281187029877751 9.63249179279715 7.29684790668334 -0.899103941719473 0.0904534645881815
AT4G18270_at 5.75180046258176 5.71149987658422 6.54954995900146 6.24718548319128 7.06184522825933 6.47442902227343 7.00911353235102 6.74626110895742 4.69429215035336 5.56727921789468 7.23631807944696 7.58678837357226 7.57812617263198 7.76681978226264 6.75538699825971 6.41488310930798 6.52167996679582 6.55951404883551 5.65546851187948 0.22765121722824 0.227294651925462 0.227809866709797 0.225283410322836 0.224006803192701 0.234108385332239 0.227852576495425 0.226431495778303 0.253998914094496 0.226154262269994 0.227920059073753 0.225936331506823 0.224006803192701 0.242619067689524 0.226925273542853 0.230044392769064 0.239622664735893 0.226773116229435 0.231117013744046 4 4 - 10099412 10100755 10099924.727 10099375 10101908 - gene protein_coding_gene FALSE TRUE AT4G18270.1 ATTRANS11 (Arabidopsis thaliana translocase 11); catalytic Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development. similar to Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog (Translocase I) (GB:O49730); contains InterPro domain Glycosyl transferase, family 4; (InterPro:IPR000715) 1.01267164220469 9.1871830651429 1.85686920730671e-06 0.0281705627440500 9.6312663272428 12.6230203473658 1.01267164220469 0.123245737159297
AT3G10080_at 5.63744434681451 6.43241974019969 3.19740437706481 3.15114593665641 3.59652201820318 3.78556737030344 6.99230614429682 7.71508916179268 6.28844049561448 6.123052193817 6.71148326128092 7.908509373783 5.97365006380072 7.0352280559644 8.04305775879395 6.70115205909413 6.17008654635533 6.9463924437982 6.34302773246579 0.219985696691259 0.215815863402258 0.244579715942737 0.230524563431995 0.214460278073973 0.235099056579338 0.212709867324415 0.216534978142564 0.216856755591334 0.216398218268968 0.216134852186987 0.211430882047769 0.211430882047769 0.218895969019405 0.219807128989095 0.216640028320866 0.213945926916596 0.216008089320109 0.215555486824552 3 3 - 3107488 3108049 3107787.182 3107280 3108182 - gene protein_coding_gene FALSE TRUE AT3G10080.1 germin-like protein, putative Identical to Germin-like protein subfamily 3 member 2 precursor [Arabidopsis Thaliana] (GB:Q9SR72); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G18980.1); similar to Os03g0804700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051622.1); similar to germin-like protein [Physcomitrella patens subsp. patens] (GB:BAD86499.1); similar to Os02g0532500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047025.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -1.28848339232961 -9.18191860963396 1.86725723880905e-06 0.0283262923127333 9.62768322597615 11.6573382632454 -1.28848339232961 0.18896104565542
AT2G12400_at 7.01656303392437 7.00817774979827 8.02621378312212 7.73801531499972 8.40569325483863 8.20995063961512 7.88603581624606 7.62541482917409 7.19158485377635 7.10043662995337 8.47713425640446 7.83782493919585 8.54550946560735 8.20465237205922 8.21673954572684 7.71229169031733 8.31694071091612 8.47066404984542 7.39081570731899 0.157513534506739 0.160444956399483 0.160130167192947 0.158611785132657 0.166115649795284 0.165110174455959 0.159404912001657 0.161873360358777 0.186647382089480 0.170557198267564 0.153306177769626 0.156578638895989 0.154985187150198 0.155250027101343 0.165708129945168 0.157193091316757 0.163489593238459 0.163558785908341 0.168375144658398 2 2 - 5012226 5012805 5012503.727 5012025 5015404 - gene protein_coding_gene FALSE TRUE AT2G12400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25270.1); similar to H0306F03.12 [Oryza sativa (indica cultivar-group)] (GB:CAH68245.1); similar to Os04g0644000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054054.1); similar to Os02g0799300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048408.1) 0.853013811300517 9.17120479624251 1.88859274494236e-06 0.0286480633480307 9.62038171216721 15.4646740656024 0.853013811300517 0.0753070470683448
AT1G63830_at 8.75864601337534 8.54366518241762 9.20143249423634 9.05579765576838 9.34547075132274 8.71831885401049 7.83979598461461 7.58671274341159 7.46641859315049 7.15015966401116 8.52245264099433 8.61759902821329 8.12524938579556 8.51411261177533 8.21507357925747 7.99698389313584 8.38041199728976 8.11303298831114 6.90178192135839 0.167582121218761 0.167305187976987 0.165039034416069 0.163045781735454 0.163045781735454 0.164930584552851 0.164524097484346 0.1703327142237 0.177397209775654 0.172528830937191 0.167146117499412 0.165980156898749 0.169242711734933 0.169291261996939 0.173577912904963 0.163045781735454 0.172368088516649 0.167957813108827 0.187432454152489 1 1|0 +|/ 23689449 23690644 23690172.778 23688862 23690985 + gene protein_coding_gene FALSE TRUE AT1G63830.1|AT1G63830.2 proline-rich family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41390.1); similar to Os10g0535800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065166.1); similar to Os03g0123600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048806.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN74842.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 1.01793887365147 9.16220332604377 1.90672208947379e-06 0.0289211606531385 9.614237344182 16.3729305807796 1.01793887365147 0.125365759370467
AT3G62390_at 3.75268422944302 3.88316058754122 2.79472204102256 2.32943039737186 3.08048615028468 3.09455103671174 5.22949139853589 4.70012180824143 4.79265419983989 5.70565111554346 5.41278398467247 5.95923018430386 4.71253351279296 4.42040721868672 5.77586814126677 4.93776873141054 4.57254912910297 4.40931104157825 5.95354388150956 0.239156341856074 0.231190207385492 0.242347805368490 0.237657603558663 0.227530054571435 0.226985095018742 0.235244437327845 0.239566608333116 0.235095800176321 0.235839762056681 0.226053180817642 0.231764230553855 0.230986787050418 0.228705138707877 0.226053180817642 0.227553591780946 0.230529787742241 0.226053180817642 0.226550835685907 3 3|0 -|/ 23098252 23098942 23098498.4 23097992 23100182 - gene protein_coding_gene FALSE TRUE AT3G62390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12060.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95542.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.01273016945675 -9.15973375533194 1.91172873979450e-06 0.0289951897964632 9.61255005476294 8.86258406878128 -1.01273016945675 0.124063463945388
AT1G13650_at 8.6922035763903 8.96319266739046 8.9997004807023 8.83025427043252 8.73195278682283 8.65705649960246 11.6294066034008 11.4535730345858 10.9081831511943 11.3223104147552 10.6464545148318 10.9624262554885 10.1814877206514 10.8822576729093 10.6949910329049 11.5277373481698 10.9335634460641 10.4497982115085 10.9284113442434 0.0975231645496855 0.0929104806826267 0.105294562871118 0.104932026113064 0.096563827166267 0.0984518358644812 0.0933289520469836 0.0960024975694612 0.106626975831359 0.0938980356959104 0.0933462360746438 0.0938027451959223 0.0947700975523908 0.095591219767565 0.0968633859398527 0.0925121417853764 0.101086481905877 0.101606063090258 0.0943008233835784 1 1|0 -|/ 4680569 4681215 4680917.8 4680429 4682193 - gene protein_coding_gene FALSE TRUE AT1G13650.1|AT1G13650.2 similar to 18S pre-ribosomal assembly protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G03810.3); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_813437.1) -0.823990869566685 -9.15954051192051 1.91212110836734e-06 0.028999228729499 9.61241799616403 20.4135714042728 -0.823990869566685 0.0644437545227012
AT1G12330_at 5.26892814786064 5.29946791474848 4.53663151693511 4.44712543728505 5.86603771059787 5.60833442003778 6.02373540197935 6.13821658665259 6.93584512066525 6.69466238236882 6.38484273464886 6.48148850520437 5.7496629643331 5.95132516728667 5.22425367662663 6.09882606022674 4.47170852793503 6.35589428640469 6.95272110984436 0.224564469735206 0.212281529924595 0.219781869946945 0.223138136509378 0.209467443919843 0.228614736697936 0.211969139892835 0.213480588405046 0.215324740783403 0.209467443919843 0.213519635982514 0.213384927929529 0.212210626621457 0.213732457842561 0.211305238653053 0.210391125195596 0.24169690998913 0.213174956720592 0.214741425427454 1 1 + 4196333 4196597 4196449.5 4194656 4196747 + gene protein_coding_gene FALSE TRUE AT1G12330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12900.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE94280.1); contains domain TNF receptor-like (SSF57586) -0.79469035277793 -9.15193783455559 1.92762717440441e-06 0.0292324660998428 9.60721919236683 11.7489728643251 -0.79469035277793 0.0514705834158911
AT4G10030_at 5.24967675300282 5.31459109299279 3.80496237250008 4.08056811603407 5.03600161779044 4.83251182297613 6.7954839894419 6.26829959489325 6.58349377167891 6.66892493127476 6.65348090754699 6.84977847390229 5.4978917335481 6.75876087301429 6.00124562677464 6.00623752747972 5.1549689386805 6.46319682400688 6.59285558583743 0.221129575625728 0.221005486552683 0.240695578447793 0.224189996005398 0.223444376791569 0.235963831046113 0.228903218279593 0.219563222303204 0.238724962425980 0.223552503221891 0.233466182648697 0.232352068950532 0.219219259614216 0.226988461947350 0.219450577868032 0.222367963627196 0.244681751263650 0.223503820823799 0.224492940681637 4 4|0 -|/ 6270487 6271594 6270828.222 6270238 6273241 - gene protein_coding_gene FALSE TRUE AT4G10030.1 hydrolase, alpha/beta fold family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52570.1); similar to Os01g0885600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045025.1); similar to Predicted alpha/beta hydrolase (ISS) [Ostreococcus tauri] (GB:CAL55286.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.955199095867682 -9.122288363783 1.98941053195512e-06 0.0301674213065674 9.58688308891402 11.5669051913120 -0.955199095867682 0.109381483359346
AT1G13250_at 4.73637618630224 4.87107521049711 2.45963093924249 2.66682966711648 3.38731675384411 3.64433269287982 5.40707811320244 5.88282122983245 5.72127965583009 5.16651255041887 6.06942508020562 7.31101715231437 5.46001992805654 5.71885996597808 6.57206302032588 5.2960269802717 4.42313122608472 6.01833779326347 5.72145476178334 0.233122166319358 0.230199399466067 0.239292617483241 0.236116360363277 0.229387408066524 0.226918101998135 0.227272084944935 0.233552448433683 0.224793286338437 0.239070094276434 0.228509662538832 0.235327507707852 0.226802855563257 0.234224715509212 0.230050299323344 0.226588652790747 0.226805803888362 0.228297450229043 0.230621184575459 1 1 - 4528963 4529478 4529203.091 4528620 4530060 - gene protein_coding_gene FALSE TRUE AT1G13250.1 GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL4 (Galacturonosyltransferase-like 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G06260.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.93130784219303 -9.10711757039183 2.0218484503154e-06 0.0306572880521324 9.57643974701989 9.8294454987763 -0.93130784219303 0.102885887280131
AT1G06460_at 11.8433592742686 11.8873809880117 12.2109013512501 12.1721396405574 12.4109275511433 12.3335413572083 11.5229388082939 11.3797321721721 10.8764150242497 11.2017168505087 11.8998851021072 11.6154205843474 11.9154972798795 12.0199521455383 11.6842761891884 11.7891886841375 11.9424334900489 11.8200484032204 10.7654853096908 0.0672530142470877 0.063841946640619 0.0680577607378923 0.065696893317583 0.0677613483645031 0.0656350777513637 0.0689483146649301 0.0682352343871625 0.0754904718617208 0.0642434187887964 0.0655031736006628 0.065582177142666 0.0640702963420575 0.0671811575043098 0.0658794775467558 0.0654045101814198 0.0784871793013277 0.0675245033797463 0.067800563220915 1 1 - 1967645 1968561 1968212 1967086 1969560 - gene protein_coding_gene FALSE TRUE AT1G06460.1 ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 31.2) ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins. similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to low molecular weight heat shock protein (Hsp17)-like [Blastopirellula marina DSM 3645] (GB:ZP_01091157.1); similar to Small heat shock protein [Rickettsia felis URRWXCal2] (GB:YP_247467.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.755745002172622 9.10095225987345 2.0351940153234e-06 0.0308576116603334 9.57218828120876 23.3619702076756 0.755745002172622 0.0299425304178407
AT1G05300_at 6.47525984628433 7.0466828101173 6.3904670692708 6.98953023876729 8.47572511283296 8.28498112291182 4.08394200178276 3.93511892803746 3.45031699761005 2.67090805440768 2.58441798072249 2.33424025230175 2.89887247844153 3.01170003473341 1.91447979243386 3.70390338019797 4.81220277173211 2.32327643441133 2.56021440593775 0.338950301708379 0.345241144380186 0.332730293635968 0.333693934661539 0.336970977749786 0.328125879523993 0.328934611061975 0.328125879523993 0.333149062467797 0.328125879523993 0.328125879523993 0.328125879523993 0.330074989012487 0.328125879523993 0.338020717401253 0.333269467400973 0.330432031634947 0.344118498300355 0.332151821743883 1 1 - 1545300 1547199 1546085.4 1545105 1547848 - gene protein_coding_gene FALSE TRUE AT1G05300.1|AT1G05300.2 ZIP5 (ZINC TRANSPORTER 5 PRECURSOR); cation transporter member of Fe(II) transporter isolog family Identical to Zinc transporter 5 precursor (ZRT/IRT-like protein 5) (ZIP5) [Arabidopsis Thaliana] (GB:O23039;GB:Q6ICX1); similar to ZIP3 (ZINC TRANSPORTER 3 PRECURSOR), zinc ion transporter [Arabidopsis thaliana] (TAIR:AT2G32270.1); similar to hypothetical protein [Thlaspi caerulescens] (GB:CAI77926.2); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689)|Identical to Zinc transporter 5 precursor (ZRT/IRT-like protein 5) (ZIP5) [Arabidopsis Thaliana] (GB:O23039;GB:Q6ICX1); similar to ZIP3 (ZINC TRANSPORTER 3 PRECURSOR), zinc ion transporter [Arabidopsis thaliana] (TAIR:AT2G32270.1); similar to putative Zn transporter [Thlaspi caerulescens] (GB:CAI77925.2); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 1.10199923868012 9.07183047001842 2.09953194174857e-06 0.03183100376885 9.5520488516196 9.3810632878874 1.10199923868012 0.149262277103128
AT4G08390_at 8.03894978086872 8.26969752196283 8.2925575573019 8.47193473835557 5.68387213957821 5.52793492172734 9.07534006465276 9.2087843644114 5.84246687115263 7.5265803464949 6.69939073125807 6.77784034182206 6.52167749415238 6.62876759019504 7.09692896481784 6.12245728588262 6.57844905487101 7.19709878937454 6.63618132718577 0.234569775049735 0.236326117875515 0.233990333029315 0.247667905818546 0.229913755554365 0.238023193172665 0.244891620828741 0.245678941293923 0.243656084776777 0.228551434328838 0.243109247612288 0.228551434328838 0.231496988592434 0.228551434328838 0.231242060234578 0.231672114602432 0.230146555962497 0.228551434328838 0.228551434328838 4 4|0 +|/ 5315886 5316805 5316421.222 5314902 5317453 + gene protein_coding_gene FALSE TRUE AT4G08390.1|AT4G08390.2|AT4G08390.3 SAPX; L-ascorbate peroxidase|SAPX Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase S, chloroplast/mitochondrial precursor (EC 1.11.1.11) (Stromal ascorbate peroxidase) (sAPX) (AtAPx05) (APXS) [Arabidopsis Thaliana] (GB:Q42592;GB:Q9STM9); similar to TAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT1G77490.1); similar to stromal ascorbate peroxidase [Brassica oleracea] (GB:BAD14932.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.809850663565458 -9.07128944005955 2.10074783261438e-06 0.0318473371424341 9.55167379511898 14.5067517843529 -0.809850663565458 0.0618036549272198
AT2G30500_at 6.70113829898135 6.62478573748878 4.81974116822499 5.02750260329039 6.00413631753876 6.08293200529737 5.85424489067023 5.80975530126828 5.65410480504511 6.67751078495583 5.88140590853545 6.73033084834553 6.00793699015508 5.33146751038372 6.05372205351174 5.85046230807568 4.76919643861875 5.43411072745931 7.26027748551205 0.200244199245711 0.198451739828922 0.194384430596392 0.193019081848099 0.197599625926210 0.205636210520906 0.192309000112649 0.191899111938918 0.206455189745557 0.193807974796384 0.195898512892753 0.195735922300882 0.19628937319414 0.195492711565521 0.195710324248929 0.190300870752595 0.196424386110454 0.190540549233492 0.196691164837319 2 2 - 13005406 13005879 13005634.091 13005236 13007179 - gene protein_coding_gene FALSE TRUE AT2G30500.1 kinase interacting family protein similar to kinase interacting protein-related [Arabidopsis thaliana] (TAIR:AT5G58320.2); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE94140.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.768602480274813 -9.06082008812742 2.12442677140588e-06 0.0322041854277417 9.54440966181556 12.0095096019983 -0.768602480274813 0.0413823644156035
AT4G16563_at 1.65939945174861 1.64539731202045 1.98968400615889 2.04013524170643 1.96344886146851 2.1859773924461 1.95079128923777 1.48611464349298 1.83741718094388 1.50758188304979 4.93605736842169 2.2937294646879 2.79788640634778 4.05450931260393 1.7952252155188 2.28505006039875 2.47954808522648 2.55652209331453 1.13053874922362 0.216909097003987 0.219696338780825 0.215709150641053 0.217048468373459 0.223030870861128 0.219379548245528 0.219734024024441 0.225030708835912 0.229689303859417 0.215277292479362 0.225386667886867 0.216417522470463 0.222515805999337 0.224491293974104 0.222083655009505 0.218731423188554 0.224175327495480 0.218445790968057 0.215277292479362 4 4 - 9329962 9330524 9330282.364 9329679 9331545 - gene protein_coding_gene FALSE TRUE AT4G16563.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G45120.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE80893.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.88367788219796 9.05749387324136 2.13201006849528e-06 0.0323170086182515 9.54209918746649 4.06094949406201 0.88367788219796 0.0896190472188691
AT1G69840_at 9.64534131202664 9.84154415211327 11.0324796867578 11.0763971428648 10.2121935866888 10.2595947630181 9.20127931232885 9.50842157995854 9.21988716557273 8.5690318021168 9.40691311600255 8.74022223843591 9.4469234423563 9.31974568980605 9.11161126047563 9.52274925917385 9.48855590902168 9.20142357884852 8.45606267577639 0.0974689749417604 0.0998192322699368 0.103107355217372 0.102537356688878 0.100724799413399 0.0976678656708732 0.0977300301185857 0.102869359561214 0.109532913140212 0.107931300611068 0.0993430292173169 0.0976305333009154 0.0952259381717748 0.101318569867296 0.100761582602159 0.0980728241656091 0.103075345028119 0.103567442458772 0.0997741563279887 1 0|1 /|- 26297609 26298289 26297820.889 26297327 26299497 - gene protein_coding_gene FALSE TRUE AT1G69840.1|AT1G69840.2|AT1G69840.3|AT1G69840.4|AT1G69840.5|AT1G69840.6 band 7 family protein similar to band 7 family protein [Arabidopsis thaliana] (TAIR:AT5G62740.1); similar to hypersensitive-induced response protein [Cucumis sativus] (GB:AAQ72788.1); contains InterPro domain Band 7 protein; (InterPro:IPR001107) 0.813730276500992 9.05575353809341 2.13598944080923e-06 0.0323751919543454 9.5408898080834 19.1112040800965 0.813730276500992 0.0640553700737064
AT1G13880_at 6.47857805653863 6.65196122121737 7.27855164500519 7.48707719832712 8.14044457436427 7.58949681657407 6.6328604488109 6.55388102893089 5.96640886026555 6.16783657330863 7.64284266293362 7.05593527216499 7.23874000880313 7.2856304105651 6.68086265861176 7.02691952407601 7.07648281741126 6.40946333189157 6.51447591913481 0.187173634067960 0.187179451539237 0.196556749347091 0.193151918580832 0.190202818993326 0.214266551718622 0.189989787690905 0.191335876868157 0.206094815871742 0.193266027894631 0.191063820002025 0.188736360726268 0.195472252717149 0.197571454465131 0.190349036587542 0.190750315335777 0.196675969978585 0.192204377245775 0.189039938495783 1 1 + 4750436 4750930 4750721.636 4748870 4751209 + gene protein_coding_gene FALSE TRUE AT1G13880.1 ELM2 domain-containing protein similar to myb family transcription factor / ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03470.2); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1); contains InterPro domain ELM2; (InterPro:IPR000949) 0.94022075229870 9.05307422518084 2.14213154096087e-06 0.032466145634803 9.53902725308758 13.7357813920761 0.94022075229870 0.107143872325733
AT1G27630_at 8.96964794613689 8.76148819829834 8.58901610053274 8.39740915304335 9.68398655786322 8.52213410721582 7.34521066286678 7.05361691449963 5.86005180394345 5.5893790496981 7.45552647871592 7.61454098115707 8.04444332480943 7.85026144362065 7.49518336168061 7.2709117479783 7.58139893556587 7.72050570481333 5.46431827987666 0.221597055283875 0.226685298619952 0.220875083917754 0.219159030585208 0.219103969114518 0.230136182028005 0.224211914169312 0.214385095082925 0.227530816178728 0.227221089902279 0.213388030731732 0.213388030731732 0.214140243191602 0.218729635353803 0.213388030731732 0.213388030731732 0.241579620153434 0.224045116459053 0.240101450431953 1 1 + 9612956 9613863 9613313.091 9611090 9614321 + gene protein_coding_gene FALSE TRUE AT1G27630.1 cyclin family protein similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to Os12g0485400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066781.1); similar to Cyclin, N-terminal domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92940.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 1.37841283433331 9.04103647447885 2.16996361992650e-06 0.0328857986599862 9.53064905613612 15.0488201426231 1.37841283433331 0.213002927786073
AT1G20160_at 6.77702137613331 6.90415653457411 8.49685769792566 8.66795393332016 9.08936137522875 9.01311742522886 8.59347954661028 8.62489439444738 7.22856790493473 7.52174648190305 8.01095245360699 8.72183871976384 7.96259736145044 8.61487818511991 8.73018276590027 8.29697562148138 8.5402925686193 6.6900282460367 8.53562740391838 0.213009312424311 0.220124330350507 0.205849755364324 0.202602010435079 0.208093170333326 0.205834598432747 0.209051915342229 0.201296256444539 0.232694505374400 0.210299366962467 0.207317141656800 0.208057387410490 0.201540219612805 0.208783296601677 0.208985317385492 0.209124808557533 0.206340817554588 0.222063611790908 0.207916699444608 1 1 - 6990905 6991355 6991159.909 6990775 6993963 - gene protein_coding_gene FALSE TRUE AT1G20160.1|AT1G20160.2 subtilase family protein|subtilase similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAG38994.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020)|similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAG38994.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259) 0.762961144156612 9.02853678991208 2.19927789380449e-06 0.0333278572027132 9.52193198696192 16.2498297040166 0.762961144156612 0.0395524764429188
AT3G44735_at 5.16917519559799 5.7258331730812 6.30109845675586 6.62038005517944 7.36919924166154 6.99126843391972 7.8190982445742 7.44703739503393 6.38116416127514 6.69723090760419 9.87389882740986 8.9426298904225 9.06404442708006 9.32526457142715 8.07577946401806 8.34020100655924 7.82569259764718 7.97800332888844 7.34485080442599 0.238862761915448 0.227392299227889 0.239250169428406 0.236903126573761 0.226961595737208 0.232447045024645 0.224183487829278 0.228231444486578 0.241881505268773 0.246421738092335 0.233000856296771 0.228662610458333 0.237772627730434 0.232303267180354 0.238034112079231 0.225622006479925 0.227300265563093 0.244718756446571 0.241654383661099 3 3|0 -|/ 16302379 16303079 16302760.5 16302181 16303139 - gene protein_coding_gene FALSE TRUE AT3G44735.1 PSK1 (PHYTOSULFOKINE 3 PRECURSOR); growth factor Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Identical to Putative phytosulfokines 6 precursor (AtPSK6) (AtPSK3_2) [Contains: Phytosulfokine-alpha-like (PSK-alpha-like) (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] (PSK6) [Arabidopsis Thaliana] (GB:Q8LA14;GB:Q7PCC2;GB:Q8W5Q9); similar to TPA: TPA_exp: putative phytosulfokine peptide precursor [Glycine max] (GB:DAA00281.1); contains InterPro domain Phytosulfokine; (InterPro:IPR009438) 1.07532059227688 9.0251021120088 2.20740767127105e-06 0.0334488484427703 9.51953359615082 14.4233552187838 1.07532059227688 0.144069417433068
AT1G48480_at 2.73093899257745 2.72715504014854 1.58554703186921 1.85051683762196 1.32572516260278 1.71252389201403 2.72225751786952 2.99395680436775 5.36203325325834 4.29535550426023 5.81861827582107 5.93145437289638 4.22101059205982 4.77380285812149 5.68205431940197 3.74688957411909 1.89362484206558 4.38953344604935 5.84723318066556 0.266624650859132 0.268166906803980 0.294313770095736 0.294313099784355 0.286267172477618 0.293865397097282 0.268669809022754 0.267623705584024 0.28056156726375 0.273726223773644 0.276605900197649 0.272107348847522 0.268258423402349 0.27799139691825 0.279384401453784 0.265732001760842 0.276340743724982 0.265732001760842 0.271946257704279 1 1 + 17923889 17924367 17924052.455 17922059 17924653 + gene protein_coding_gene FALSE TRUE AT1G48480.1 RKL1 (Receptor-like kinase 1); ATP binding / kinase/ protein serine/threonine kinase Arabidopsis thaliana receptor-like protein kinase (RKL1) gene similar to RLK902 (receptor-like kinase 902), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G17840.1); similar to putative receptor kinase [Oryza sativa] (GB:AAK18840.1); similar to Os03g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049422.1); similar to Putative leucine-rich repeat transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAN05336.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.89304131768751 -9.02153901359266 2.21587575536384e-06 0.0335749494452729 9.51704411507672 7.06874308378135 -0.89304131768751 0.0937785563392721
AT3G08690_at 8.67391171975265 8.8584409551476 9.53061192085002 9.47670731648869 9.4346890031955 9.49091572659233 8.19925867266439 8.60869013935786 7.53220382992133 7.91264590608736 8.6059101543012 8.21235418315066 8.78240999070527 8.35372338175608 8.1265321895186 8.77739418334924 8.87784354857406 8.3137874622026 7.68175041526518 0.146655717604453 0.146671105561619 0.148834187157679 0.154852823667723 0.149674135574277 0.154744536936201 0.155452519778008 0.145969265487419 0.15954308354884 0.154173088861162 0.150744655497004 0.154062445197127 0.150570043828325 0.162602810785056 0.150342848551024 0.146314372672168 0.163569970026486 0.147416690791591 0.159110018422972 3 3|0 +|/ 2641513 2642440 2641972.333 2641062 2642694 + gene protein_coding_gene FALSE TRUE AT3G08690.1 UBC11 (ubiquitin-conjugating enzyme 11); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC 6.3.2.19) (Ubiquitin- protein ligase 11) (Ubiquitin carrier protein 11) (UBC11) [Arabidopsis Thaliana] (GB:P35134;GB:Q9M9J1); similar to UBC10 (ubiquitin-conjugating enzyme 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to ubiquitin conjugating enzyme [Zea mays] (GB:AAB88617.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.847766644827217 9.00999547727806 2.24355222614469e-06 0.0339920597783182 9.5089689137979 17.1417087336491 0.847766644827217 0.0788780643131526
AT1G30900_at 9.55177017785212 9.68265702071352 10.5088495605120 10.4616242828667 8.71746852412297 8.62181361000264 4.50970302146632 4.83510212543378 7.28450183659672 4.23925045193057 4.07699624089458 4.85065732396828 4.08580966791718 4.89092949461375 4.07039137815656 4.5205482810144 4.48492210788453 5.37511877404481 4.56411753245481 0.23771669521231 0.232160657468237 0.234937360776239 0.236434750526387 0.229081220930261 0.234929162599663 0.231796509612358 0.232320283373751 0.233940201675333 0.228844581505337 0.231887336817912 0.236682325117080 0.235051665278060 0.246327589337595 0.229475679144787 0.231585507575247 0.245344060901448 0.234038063191023 0.232817818685845 1 1|0 +|/ 10999503 11000460 11000033.556 10997256 11000524 + gene protein_coding_gene FALSE TRUE AT1G30900.1 vacuolar sorting receptor, putative Identical to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (VSR6) [Arabidopsis Thaliana] (GB:Q9FYH7); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT4G20110.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.2); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G34940.1); similar to Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa proaleurein-binding protein) (GB:P93484); similar to Putative vacuolar sorting receptor protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05373.1); similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (GB:Q9FYH7); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.807214646455341 8.9992791494488 2.26958004953114e-06 0.0343841377503968 9.50145879979661 13.3146460064825 0.807214646455341 0.0634419511435655
AT1G60230_at 3.85267808053238 4.12668350382167 2.72842012274867 2.94937689899423 3.50257516501607 3.49727526420748 4.25165793620161 4.42343162274783 4.54125411459484 4.66669664313924 4.06294849293959 3.99116945691771 3.53380182488988 4.15640549409726 4.14552327027163 4.05320123501993 3.95249899001572 3.7578443289079 4.58530588669258 0.266359624601366 0.270073524832689 0.285010074945523 0.269969042111625 0.267268337924117 0.274050905498657 0.268311446839586 0.277274233595958 0.277554518563974 0.263949052280694 0.264998825134973 0.260264536681233 0.266674109002616 0.260240730767886 0.26663467540217 0.268284348344450 0.265838152484602 0.263934304558516 0.266150543623660 1 1 - 22215896 22216605 22216286.727 22215749 22218089 - gene protein_coding_gene FALSE TRUE AT1G60230.1 radical SAM domain-containing protein similar to radical SAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19630.1); similar to Os01g0640800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043681.1); similar to florfenicol resistance protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68852.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Conserved hypothetical protein 48; (InterPro:IPR004383) -0.817639500630349 -8.99903455075446 2.27017792743849e-06 0.0343909254227656 9.50128722965388 7.94372550000441 -0.817639500630349 0.0677868962597373
AT4G25710_at 3.46451941491716 3.74205422476727 4.21372929550682 4.37780135470404 4.35353327498998 4.70713525917155 3.29786406864299 2.90266129324874 3.41081494807571 4.08357344995692 4.5967750532554 4.66630774584279 4.40874956894227 4.72271681249255 4.22855669354109 4.80187103334073 4.74180223207854 4.41321310634573 3.80339624849125 0.245482580429031 0.246532854490388 0.253350349394745 0.245958257043491 0.243632108276789 0.263213129924651 0.251280538339314 0.245619096747400 0.24238935660311 0.244670105614777 0.241868533279681 0.241568145139976 0.241989404883391 0.241568145139976 0.247006798595459 0.247754866131497 0.248210502098459 0.251867551875422 0.253453685006104 4 4 - 13098374 13098913 13098623.636 13098150 13099540 - gene protein_coding_gene FALSE TRUE AT4G25710.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.933922930460492 8.98400699745068 2.30723862553647e-06 0.0349500506996265 9.49073327168194 8.05162589636249 0.933922930460492 0.107400575317051
AT3G02250_at 5.75160458994273 5.85150889194903 4.5218188920004 4.0303909962464 5.02422565360138 5.22061776905955 7.6431589523339 7.34387236242079 6.44793138972741 6.59226800448167 7.36511045678493 7.6303263782973 6.18946286228425 7.03022430441542 6.67884439315576 6.12942068739546 4.81422889227126 6.50398567769463 6.3289694041259 0.225094449257375 0.225940825963174 0.233405994695124 0.232516706457454 0.234541743490153 0.232831385954112 0.228506957417228 0.235145454155684 0.240229549330878 0.223628775773242 0.221456061793254 0.221456061793254 0.236428502627557 0.221456061793254 0.233950224163679 0.222918424641210 0.236568799081542 0.223625011345797 0.227061487439287 3 3|0 -|/ 424248 424894 424618.4 423808 427068 - gene protein_coding_gene FALSE TRUE AT3G02250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15740.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96934.1); similar to Os06g0284200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057398.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96844.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.93098100717115 -8.9810879388843 2.31451311877109e-06 0.0350579302100256 9.48868020203017 12.1729447914355 -0.93098100717115 0.106625349016452
AT1G78210_at 8.6505259907793 8.82862532222397 9.10407083881204 9.06418764659953 9.1540326777517 8.9581457120395 8.0321588232638 7.87550546707701 8.8183786161285 7.67865334868528 9.56605610754924 9.49072891168682 8.55330249595146 9.16585319182145 9.3398021447109 8.6329106545785 8.06592502183987 8.83831369441885 7.84189607762746 0.144777592040633 0.141334734117841 0.143139823962000 0.141467102120422 0.148667036189797 0.151525148486330 0.142923815063165 0.148115316905836 0.155262233249862 0.162682585828139 0.145118038625120 0.148352454295650 0.150926180442422 0.151792447952482 0.141902315530175 0.144619174321740 0.172021484752758 0.146282038739421 0.15441187141282 1 1 - 29427714 29428814 29428364.091 29427609 29429268 - gene protein_coding_gene FALSE TRUE AT1G78210.1 hydrolase, alpha/beta fold family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT5G09430.1); similar to Putative hydrolase [Oryza sativa] (GB:AAM08532.1); similar to Os07g0622700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060317.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.783520415818615 8.97260548641 2.33579300621424e-06 0.0353779208721209 9.48270867928075 17.2432003308017 0.783520415818615 0.0536809927556253
AT2G26580_at 6.39137020265265 6.50951277494436 6.30530475174941 6.64012225028863 8.10500888901056 7.69345199013419 6.35193860417078 6.48653926232381 5.92297648985688 5.63391452985194 6.86835779416223 7.47046277199331 6.87431005274262 6.64887074481093 6.87683114887631 6.42241414355096 6.56463406765863 6.30918404375767 5.57512222013558 0.203308839237783 0.205271767766012 0.206378808039906 0.201475076167905 0.220987184572707 0.208459499196841 0.209353976764188 0.207049261682038 0.223234088668322 0.204664073498773 0.205095329241779 0.207070109446375 0.201475076167905 0.210008501664789 0.205596386614179 0.203537009139087 0.211859227364543 0.205898788891371 0.211645096144181 2 0|2 /|- 11311813 11312038 11311932.25 11310668 11314031 - gene protein_coding_gene FALSE TRUE AT2G26580.1|AT2G26580.2 plant-specific transcription factor YABBY family protein Identical to Axial regulator YABBY5 (YAB5) [Arabidopsis Thaliana] (GB:Q8GW46;GB:O48725); similar to YAB2 (YABBY 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G08465.1); similar to YABBY-like transcription factor PROLONGATA [Antirrhinum majus] (GB:AAS10178.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.897421887634372 8.96611676992937 2.35221394422818e-06 0.0356242801853358 9.4781351515288 13.0429331786054 0.897421887634372 0.0969039431681906
AT2G31840_at 7.64446650648231 7.66017063234704 6.42206149277039 6.74811726475503 7.55129611282088 6.77852204776516 8.42899980216849 7.9965364066287 8.06349007251882 8.36730682958954 6.42415774425512 7.14120522209921 6.75562973703813 7.18860515495636 7.58574352345223 7.53717886321402 7.53685638993475 6.80673679119885 8.64108036859836 0.191994714427038 0.191414886180206 0.207449957621174 0.202099555646982 0.194263895254725 0.206010664585894 0.194501064376335 0.191414886180206 0.201771167414900 0.193588297571308 0.199352629391980 0.196713631036912 0.196025194574241 0.195105283460934 0.197417731777200 0.193784501852697 0.195260963508619 0.204728845773661 0.199198542717360 2 2|0 -|/ 13545112 13546097 13545567.1 13544989 13546835 - gene protein_coding_gene FALSE TRUE AT2G31840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28590.1); similar to Os05g0417200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055561.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77387.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -1.14641117633955 -8.95944990694419 2.36921574540283e-06 0.0358794032483805 9.47343102683886 15.143424584136 -1.14641117633955 0.163329440028743
AT4G17230_at 8.57635456773428 8.71971456358328 9.1303343479733 9.39968374165063 9.07544769190298 9.16090677155088 7.71461387191864 7.56370958066553 6.50592850279215 6.59960663068338 6.7893747102222 6.08756515560024 6.67955258357822 7.03336158102243 6.48262547815293 6.74115834528022 7.8274599284349 7.45445572928682 5.91800591726984 0.220664496528327 0.224648419877120 0.227576062080417 0.222415155780042 0.223847072531122 0.224647307253698 0.223734002597218 0.226270605176622 0.231896423996181 0.228767189933049 0.221740624182798 0.226784356381400 0.226482860309130 0.224541517372826 0.240220998390739 0.223136121292124 0.224812161186658 0.224008319342811 0.228374461615251 4 4 - 9661523 9661889 9661738.636 9660996 9663783 - gene protein_coding_gene FALSE TRUE AT4G17230.1 SCL13 (SCARECROW-LIKE 13); transcription factor Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS family transcription factor [Brassica oleracea] (GB:ABD65110.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.796879415496401 8.95304532212539 2.38567381882544e-06 0.0361262586384736 9.46890715694307 15.2816579117203 0.796879415496401 0.0607361578133412
AT3G28040_at 7.71542265050257 8.29065949072345 6.622452591974 6.41140774167654 7.74500338362192 7.91591861989433 8.80859345323142 9.02243981846649 9.27322864101864 8.77788592045932 8.82776449757573 9.09536728588667 8.32191618990662 8.46759015340765 8.79342278181968 8.43316015456978 6.79255584620872 8.39861376159483 9.02593243369952 0.149681756659641 0.147192750120119 0.163546506523425 0.174666786516391 0.150840041218138 0.148220446783242 0.143450909648768 0.149162639917227 0.148094806763135 0.149289292499591 0.143794082450965 0.143450909648768 0.149692570096883 0.145653869605846 0.146550086678632 0.143450909648768 0.171995144574022 0.149017293289534 0.147781829949398 3 3 + 10438962 10439475 10439232.909 10436294 10439628 + gene protein_coding_gene FALSE TRUE AT3G28040.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G56370.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92869.1); similar to Protein kinase [Medicago truncatula] (GB:ABE85779.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26311.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.95998338339695 -8.94241732150154 2.41325821212682e-06 0.0365415558480244 9.46138967210528 16.5249778015599 -0.95998338339695 0.116137555683746
AT2G04530_at 5.69725564550659 5.56828398228558 4.61160249334743 4.42180139452345 3.89293483166441 4.28794124247707 4.44971466794929 4.88900517395871 5.04106025036135 3.92119113654999 2.61755883455858 3.14560232553208 3.17539913620338 3.36602963527603 3.88228203473585 3.81693324867370 4.07175009141633 3.22729008330318 4.35227145599006 0.269901259056181 0.268668944002526 0.277299980791962 0.267966128877001 0.27221023316854 0.274953139593002 0.268051640689148 0.26919601554689 0.276210702560989 0.266366885983097 0.269522159119842 0.265326582460770 0.272707675254591 0.272714381958262 0.270355657470868 0.265367462009147 0.273200997994407 0.26691198047086 0.264034954076661 2 2|0 +|/ 1577731 1578251 1578000.125 1576706 1578738 + gene protein_coding_gene FALSE TRUE AT2G04530.1 CPZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast. Identical to Ribonuclease Z, chloroplast precursor (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase CPZ) (CPZ) [Arabidopsis Thaliana] (GB:Q8L633;GB:Q8LGU8;GB:Q9SJB8); similar to NUZ [Arabidopsis thaliana] (TAIR:AT1G74700.1); similar to Os02g0214300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046280.1); similar to RNase Z (ISS) [Ostreococcus tauri] (GB:CAL55620.1); contains domain RIBONUCLEASE Z, CHLOROPLAST (PTHR12553:SF4); contains domain no description (G3D.3.60.15.10); contains domain Metallo-hydrolase/oxidoreductase (SSF56281); contains domain ELAC RELATED (PTHR12553) -0.936406742088347 -8.93313454261152 2.43763325585936e-06 0.0369082051269666 9.45481305478738 8.65283240630383 -0.936406742088347 0.109676847099523
AT4G01660_at 5.61635616957098 5.28051553318862 5.30593361137272 5.14869541483855 4.71965797742674 4.61108575637332 6.1053414461857 5.92787228667101 4.08600892779114 4.61209107874734 3.58390792139951 3.35864547063170 3.51962302960424 3.65606037874225 3.69151250092714 4.02065382869714 4.10837371883005 3.50776742705782 4.94217855126922 0.253930083568545 0.258725243948045 0.257082855244623 0.255484739897735 0.252240584432793 0.256185679705809 0.253381324217763 0.25398681392765 0.251735780005928 0.250536133460710 0.257210621088780 0.250564686211784 0.257996730135907 0.255901816471308 0.252539860666421 0.255376009570875 0.263001890031285 0.250636052783164 0.253375175444796 4 4 + 710469 711051 710848.727 708544 711256 + gene protein_coding_gene FALSE TRUE AT4G01660.1 ABC1At (ARABIDOPSIS THALIANA ABC TRANSPORTER 1) Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.2); similar to ABC1 protein [Capsella rubella] (GB:AAM18498.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.826059826842123 -8.93024573720275 2.44527296172865e-06 0.0370214326405717 9.45276438030919 9.45322105133118 -0.826059826842123 0.0735830411081689
AT1G77000_at 7.89358795688064 7.66220420437228 8.09759968705977 7.77689191913746 9.14420368168232 8.73746800573938 7.1881774496311 6.73122744171052 4.96223220504183 6.00645767270042 6.60180665394855 5.86881217258145 7.01072630366304 6.86935611189196 5.29721849853875 6.4193085728518 7.30476717719861 6.20663434661497 5.61575749122078 0.170659490888856 0.169789235257373 0.171571838062271 0.170524255670307 0.181409024954573 0.172594584542595 0.169821312043124 0.178364964244341 0.187280182481098 0.174641636784458 0.174735330095893 0.17738301928223 0.169506421271975 0.175921357035063 0.172248902997403 0.170800222283348 0.187616772822794 0.181544228628618 0.170466019883228 1 1 + 28946793 28947239 28947038.545 28945644 28947490 + gene protein_coding_gene FALSE TRUE AT1G77000.1 ATSKP2;2 (ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2); ubiquitin-protein ligase AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G21410.1); similar to Os05g0425700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055598.1); similar to Os01g0881900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045004.1); similar to GA21468-PA [Drosophila pseudoobscura] (GB:EAL25131.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.994710583464781 8.929936260436 2.44609293404199e-06 0.0370314009284617 9.4525448493644 13.8916589696011 0.994710583464781 0.126060450025374
AT2G31360_at 10.9796847340874 11.3010653323705 10.6422884014812 10.7421690931070 11.3707220573602 10.9562118500961 10.0695523671682 10.1338052302481 9.9481914023025 9.52206752258146 11.2646730569763 11.3155918667878 11.1687624719413 11.4002278345858 11.0009470752994 10.3308780912864 10.3150730084955 10.9801027003507 9.07614625920432 0.099644197941108 0.0934108637578452 0.0969132143469712 0.0972995396951305 0.099859869687933 0.0996583893883922 0.103555176313071 0.0959210209553026 0.095414119748411 0.097649412086128 0.0945313760947197 0.0934108637578452 0.0934108637578452 0.094832734706078 0.0979462462437364 0.0934108637578452 0.103035434930658 0.0934108637578452 0.106169054132338 2 2 - 13379215 13380115 13379733.636 13378735 13380683 - gene protein_coding_gene FALSE TRUE AT2G31360.1 ADS2 (16:0DELTA9 ARABIDOPSIS DESATURASE 2); oxidoreductase homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature. Identical to Delta-9 acyl-lipid desaturase 2 (EC 1.14.19.-) (ADS2) [Arabidopsis Thaliana] (GB:Q9SID2;GB:O65798;GB:Q8LD80); similar to ADS1 (DELTA 9 DESATURASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G06080.1); similar to Delta-9 desaturase [Rosa hybrid cultivar] (GB:BAA23134.1); similar to desaturase delta 9 [Picea glauca] (GB:AAM12238.1); similar to delta 9 acyl-lipid desaturase/delta 9 acyl-CoA desaturase homolog [Rosa hybrid cultivar] (GB:AAB50679.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Acyl-CoA desaturase; (InterPro:IPR012196) 0.881692276530969 8.9292309931085 2.44796268121625e-06 0.0370572590682516 9.45204451846673 21.0181875871956 0.881692276530969 0.0930655712822077
AT1G52880_at 8.61341256409345 8.79628828924266 9.54385261655425 9.63401883186829 9.75923152755503 9.7767638420275 9.12906927353036 9.15158508078416 7.9464459964473 8.47726869355816 8.85878557469463 8.1399030398277 9.47517877226128 9.08411638131303 8.29972036351975 9.36626073648046 9.79205545783756 8.76362735199197 8.27257462744802 0.146552679866978 0.140232141530776 0.148328141652423 0.150702140479791 0.146371932065860 0.142066233476322 0.143010107677180 0.146406900827089 0.162236658413304 0.159012036489008 0.143225240445371 0.151338491333088 0.149814511713517 0.143560636739584 0.151826401302904 0.144608258296789 0.149422019293536 0.153012949444532 0.153075032933152 1 1|0 -|/ 19692994 19693528 19693181.1 19692625 19694210 - gene protein_coding_gene FALSE TRUE AT1G52880.1 NAM (Arabidopsis NAC domain containing protein 18); transcription factor Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. Identical to NAC domain-containing protein 18 (ANAC018) (Protein NO APICAL MERISTEM) (AtNAM) (NAM) [Arabidopsis Thaliana] (GB:Q9ZNU2;GB:Q8LDB9;GB:Q8LPH5); similar to ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15510.1); similar to NAM-like protein [Prunus persica] (GB:CAG28971.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.748118711589127 8.92088613654095 2.47020351625693e-06 0.0373914706255811 9.44612014643672 17.9028039526529 0.748118711589127 0.0356290180442247
AT4G05590_at 8.78244212165935 8.8196315917198 10.0156627444833 9.76923564354088 10.0086151182011 9.76366743297063 8.234066947909 8.5463298753072 6.84917004237757 6.96693498674997 7.23502283915114 7.10954740423318 7.4415093581637 8.04090508616398 5.99630890072783 7.5878837438778 8.04265363702853 7.12646990042457 6.96528268891267 0.254769919955715 0.254080169814303 0.2600392547574 0.262506021912948 0.255964695742302 0.255146505116342 0.250729904311611 0.25131472389934 0.265470612191529 0.254548048098478 0.252077285720946 0.250729904311611 0.252502026496515 0.250729904311611 0.254796734024032 0.25706005995649 0.265440155992344 0.263803021375746 0.250729904311611 4 4|0 +|/ 2907191 2908033 2907758.714 2907062 2908553 + gene protein_coding_gene FALSE TRUE AT4G05590.1|AT4G05590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22310.1); similar to Protein of unknown function UPF0041 [Medicago truncatula] (GB:ABD28486.1); contains InterPro domain Protein of unknown function UPF0041; (InterPro:IPR005336) 0.844542985012374 8.91024580545595 2.49887953950445e-06 0.0378230407099394 9.4385544373621 16.3672898585080 0.844542985012374 0.0810991241239087
AT1G25560_at 8.40594267465714 8.63760686273441 7.91744806006432 8.07149029303365 7.87755027014609 8.0145834003024 4.48214627016749 5.30670103655405 6.08113313882973 5.66328486455978 6.58540947224088 6.94059922970165 6.56925167787006 7.05975184199531 6.36835397455937 7.10945768316789 6.63682165576925 5.87257800430957 5.40781696255329 0.204465834292543 0.208502053946632 0.201618532323938 0.201800255015540 0.201183988051822 0.208143560643663 0.225760971163617 0.209727647457849 0.211193321680577 0.211376560847734 0.198501362319038 0.198000746820538 0.204806231230413 0.206997854744419 0.202326426399056 0.198000746820538 0.216100169876085 0.204085552509777 0.205368206681113 1 1 - 8982031 8982423 8982235.091 8981664 8983028 - gene protein_coding_gene FALSE TRUE AT1G25560.1 AP2 domain-containing transcription factor, putative similar to RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G68840.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 1.09376754099791 8.89803744133309 2.53222531301503e-06 0.0383252301124824 9.42985763402725 13.5192784073405 1.09376754099791 0.152451822920539
AT2G39480_at 7.23999759564145 7.15196637548152 7.45672816708135 7.52615439639231 7.75500818738167 8.03365890703543 6.10346660054668 5.87344440011106 6.32384706260879 5.81808229111024 7.32486725836431 6.26057358315977 6.53407257791877 6.70130127208375 6.2801649989337 6.4886604612102 6.50505990773922 6.65927610465985 6.12955302099218 0.225702341962637 0.226913108714950 0.23287477089497 0.235416478490193 0.230381146024815 0.241048870080985 0.225686223710507 0.22451250946045 0.233309640125625 0.226515851807416 0.224271761322287 0.224271761322287 0.227831936539184 0.228028816620535 0.226502491466543 0.224271761322287 0.227404843074997 0.224271761322287 0.240711313625192 2 2 - 16485335 16485897 16485601.182 16484870 16492117 - gene protein_coding_gene FALSE TRUE AT2G39480.1 PGP6; ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 6 (P-glycoprotein 6) (MDR6) [Arabidopsis Thaliana] (GB:Q8LPT1;GB:O80635); similar to PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4), ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G47000.1); similar to PGP20 (P-GLYCOPROTEIN 20), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G55320.1); similar to Os01g0976100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045564.1); similar to Os03g0280000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049736.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59584.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.80221078356624 8.89055049350821 2.55291270481625e-06 0.0386357808746892 9.4245156424489 13.4849236514151 0.80221078356624 0.0654700200335014
AT4G00490_at 7.86341372244175 8.19368200025321 7.3086827535885 7.1727283100361 6.82509312293458 6.8133923190729 8.0993913301776 8.22932843790613 7.80396565003205 7.799275089358 7.08470676552149 7.52374989676291 6.4140389018749 7.07435081538279 7.3804372206286 7.30952896144581 6.38325136743671 6.82494940346311 7.00767896524975 0.202883459305397 0.197087318465289 0.205014064773896 0.198118989672162 0.193532044888524 0.20611852555041 0.203265286624642 0.205779558565390 0.203684332455229 0.211105640100359 0.197875925022451 0.203008280130282 0.204596739216372 0.20137074765015 0.202892468533998 0.200342087346357 0.217931656653761 0.214017199069802 0.209153740121358 4 0|4 /|+ 224249 224819 224520.889 222320 225131 + gene protein_coding_gene FALSE TRUE AT4G00490.1 BMY9 (beta-amylase 9); beta-amylase similar to BMY4 (beta-amylase 4), beta-amylase [Arabidopsis thaliana] (TAIR:AT2G45880.1); similar to Os09g0569200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063976.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O64407); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.802038157301024 -8.87990417479826 2.58264494336295e-06 0.0390831659279115 9.41690819460119 14.8313889502736 -0.802038157301024 0.0658020434970249
AT1G74070_at 5.96453566192687 5.96043196653591 4.88980238440887 4.45081198215172 5.55196624485951 5.64337177546494 7.42384690631592 7.18559577219477 7.47111593631849 7.50102677508658 7.0220744760897 7.77755672043557 6.70382010321122 7.42100609635824 8.0713331701586 7.34334962139572 6.44561794398614 6.899125163522 7.31055429153014 0.211282395202732 0.199841418312324 0.211177951106019 0.209982942487803 0.200212204156860 0.201214970569435 0.202218903056133 0.196079504396267 0.207514742782159 0.197075847093473 0.197980872900592 0.199401611963501 0.199903758201880 0.198721809014553 0.194703467460988 0.194716883429333 0.198216231633496 0.195770305480067 0.200882371491517 1 1|0 -|/ 27855612 27855985 27855833.2 27855149 27856637 - gene protein_coding_gene FALSE TRUE AT1G74070.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G35100.1); similar to Os01g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041801.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44942.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.858347367886266 -8.85092924629896 2.66547531870035e-06 0.0403339725225737 9.39613691511618 13.2028208765022 -0.858347367886266 0.0878749682393524
AT3G50770_at 5.97394295302198 5.78424559831031 10.2735346265395 10.3991139013416 9.72570383715477 9.55196416721253 10.0343778715789 9.87488499996599 2.07662795902306 3.53277468757833 1.75984117252731 1.94148945564267 2.11470793203133 2.08348696831135 1.85104060909148 2.11916212948913 2.22267425265323 2.41258444182149 2.12010948960767 0.380285057339538 0.380266261554814 0.383325510521463 0.383228080789894 0.380651102648029 0.383556486701909 0.373792970079041 0.389630349079244 0.368105247636547 0.375160665500144 0.368513344525129 0.365150555663446 0.362667582003703 0.366649726021908 0.374984979808092 0.361780791103124 0.364154388904609 0.365935317614942 0.362630357161294 3 3 + 18884988 18885428 18885173.909 18884939 18885761 + gene protein_coding_gene FALSE TRUE AT3G50770.1 calmodulin-related protein, putative Identical to Calmodulin-like protein 41 (CML41) [Arabidopsis Thaliana] (GB:Q8L3R2;GB:Q9SVM1); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G76650.1); similar to calmodulin-like protein [Musa acuminata] (GB:AAL06347.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.778667801067896 8.84607622723616 2.67962708925796e-06 0.0405454374875621 9.3926483342289 11.2720347021902 0.778667801067896 0.0567077424119063
AT1G53100_at 4.38498851902133 4.4171539165769 7.13908539335766 6.77535704667145 7.11927267472018 5.63693308093946 2.92059958161427 2.74870174368967 1.80685344817361 2.20815897367509 1.92346007877593 1.94355552278718 2.24677912503363 2.50909217216794 1.88374426077319 2.05273133753115 2.54747242134857 2.02617984781942 1.98693683900946 0.357417294537147 0.360913250438517 0.388845999179511 0.38656671813099 0.391497631278573 0.384935569187110 0.357417294537147 0.357417294537147 0.361122428500061 0.357417294537147 0.357417294537147 0.371939236871085 0.359487257669450 0.357417294537147 0.361852314357754 0.36058613129415 0.363545238254152 0.358164553187969 0.357417294537147 1 1 - 19790719 19791251 19790948.182 19790624 19792637 - gene protein_coding_gene FALSE TRUE AT1G53100.1 acetylglucosaminyltransferase similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT3G15350.2); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) 1.59538910042844 8.84283176358102 2.68913345682016e-06 0.0406865892016890 9.39031452096704 7.21389979427337 1.59538910042844 0.265863585502684
AT3G18560_at 4.4190790885333 4.71839377178207 2.79111492381168 2.83683827712563 3.3269878176095 3.76852643004005 4.36580083513618 4.41590918345882 4.34868125259678 3.16189484646638 2.73266040339291 3.48502865288297 3.19858529780025 3.33658645519215 3.09327027742263 3.42542434262976 3.66343622242320 2.74285494643320 3.45876022036161 0.228285013498502 0.213214758585022 0.220847069561659 0.209474402003692 0.21075285924709 0.212756033086478 0.211268076788307 0.214481018893510 0.208679152453021 0.209638891656122 0.209627855272587 0.210962813597025 0.213643133128375 0.214149308826262 0.224294789011153 0.212448573471476 0.20802514624345 0.213802803723635 0.211430532394997 3 3 + 6393995 6394526 6394201.818 6393916 6394791 + gene protein_coding_gene FALSE TRUE AT3G18560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49000.1); similar to Os02g0711400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047903.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45365.1) -0.872821736308503 -8.83970353747563 2.69833375612505e-06 0.0408230913964158 9.3880631517398 7.26341942322735 -0.872821736308503 0.0930556456100234
AT2G02950_at 7.72571559358293 8.24363465183198 5.7923878644855 6.26087124641871 7.36546229816826 7.62596404477507 8.21605795437793 8.11345787782308 7.5972520523461 8.03384723487311 7.15847096877778 7.54482120276251 7.24759709853371 7.07435677992867 6.89743366065148 7.59791659062291 6.76926011478796 6.21981394238571 7.61396199475672 0.218090277517144 0.216929898826598 0.220532095202187 0.218100714153703 0.220544174789440 0.222683048742949 0.22233362736618 0.215980250738158 0.226673279112714 0.215980250738158 0.218596794085372 0.225750194800227 0.217227843275042 0.225958113721697 0.220622318362776 0.215980250738158 0.235664639286801 0.236460120782878 0.218833366266773 2 2 - 855155 855678 855405.909 854946 856537 - gene protein_coding_gene FALSE TRUE AT2G02950.1 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling. Identical to Phytochrome kinase substrate 1 (PKS1) [Arabidopsis Thaliana] (GB:Q9SWI1;GB:O80610); similar to PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) [Arabidopsis thaliana] (TAIR:AT1G14280.1); similar to putative phytochrome kinase substrate 1, putative [Medicago truncatula] (GB:ABE90777.1) -0.999095060897196 -8.83138398744465 2.72296794949063e-06 0.0411930591398942 9.3820700261632 14.8239752191654 -0.999095060897196 0.130206214709465
AT1G11260_at 11.1642915289600 11.3659693405995 11.3346375040346 11.4653846343069 12.0143159520868 12.0542107682615 9.38633561600392 9.54032450999829 10.9250641220056 10.2824608892838 11.4552293032836 10.7482515533412 11.1363287704844 11.1468135843968 10.6933219133736 10.8317289508290 10.7785202885365 10.5270664355938 11.0314243475849 0.121817261845006 0.119202428142899 0.119993230125574 0.121351079388640 0.120915264710416 0.124200448082050 0.129054535740103 0.125477096658389 0.129676113846440 0.121925600006119 0.123345550757266 0.11873138298276 0.11873138298276 0.128037650753070 0.119700091015407 0.120738198303856 0.11873138298276 0.122088327687468 0.122739118726758 1 1|0 +|/ 3779449 3779968 3779738.333 3777329 3780337 + gene protein_coding_gene FALSE TRUE AT1G11260.1 STP1 (SUGAR TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a H+/hexose cotransporter. Identical to Sugar transport protein 1 (Hexose transporter 1) (Glucose transporter) (STP1) [Arabidopsis Thaliana] (GB:P23586;GB:Q56Z12;GB:Q8H775;GB:Q8LBC8;GB:Q9SXB1); similar to STP4 (SUGAR TRANSPORTER 4), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G19930.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to glucose transporter, putative [Arabidopsis thaliana] (TAIR:AT4G21480.1); similar to monosaccharide-H+ symporter [Datisca glomerata] (GB:CAD30830.1); similar to monosaccharide transporter [Populus tremula x Populus tremuloides] (GB:CAG27609.1); similar to hexose transporter 1 [Juglans re (GB:AAY89231.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.760624056401892 8.79427901540235 2.83583278850293e-06 0.0428976425916838 9.35524172214426 21.8711707582504 0.760624056401892 0.04987846342282
AT1G13260_at 9.24183163887757 9.21895468541513 9.21779661854019 9.1954420529883 9.8628098788341 9.67335561872538 8.04484430793672 8.29094175155923 8.58135236860615 8.22481625017326 9.32558304550344 9.01126544182504 9.223165162887 9.52946693799231 8.67673791813117 9.10384867573595 9.093195932093 8.71936234968057 8.20496642495417 0.115383407489441 0.115961214995720 0.116252427846945 0.112922258509933 0.117258299060774 0.124047799255472 0.121703104835664 0.115817998717002 0.116460719461389 0.118684721292646 0.114786286870780 0.118127715010026 0.115406914242413 0.115365452852882 0.113151305352587 0.114083333281538 0.117418783506549 0.119160957143615 0.120912153756364 1 1 + 4542898 4543387 4543143.636 4542165 4543739 + gene protein_coding_gene FALSE TRUE AT1G13260.1 RAV1 (Related to ABI3/VP1 1); DNA binding / transcription factor Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. Identical to DNA-binding protein RAV1 (RAV1) [Arabidopsis Thaliana] (GB:Q9ZWM9); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G25730.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.768245557364017 8.78970508531479 2.85009185026352e-06 0.043110489327086 9.35192335354975 17.8044336678890 0.768245557364017 0.0540307451384626
AT3G23940_at 6.14319191233414 6.59115229907994 5.55173122842738 5.33139178233009 4.84404728017395 4.80608122945174 6.47807471873659 6.83383126349153 5.75572889254923 6.4251890980967 5.50091121494589 6.50940340405132 5.08890035080801 5.09322175586721 6.6766891370198 5.33929325834468 4.93992441787262 5.85408062612182 6.0113610322222 0.189833568709017 0.194045937844527 0.186985017543719 0.186297371118969 0.191060397136879 0.189017627765971 0.189293732120566 0.192089766880751 0.192286827347206 0.186297371118969 0.189522160506960 0.186297371118969 0.186297371118969 0.195084359758199 0.192340598286719 0.190181614699592 0.209800164456940 0.188693420091312 0.188112940587637 3 3|0 +|/ 8650929 8652288 8651651.6 8648712 8652612 + gene protein_coding_gene FALSE TRUE AT3G23940.1 dehydratase family similar to dihydroxy-acid dehydratase [Rhodopirellula baltica SH 1] (GB:NP_870314.1); similar to dihydroxy-acid dehydratase [Blastopirellula marina DSM 3645] (GB:ZP_01094431.1); similar to Dihydroxy-acid dehydratase (DAD) (GB:Q7UJ69); contains InterPro domain Dihydroxy-acid and 6-phosphogluconate dehydratase; (InterPro:IPR000581); contains InterPro domain Dihydroxy-acid dehydratase; (InterPro:IPR004404) -0.908519827654275 -8.7752133593091 2.89578309964347e-06 0.0437987193821075 9.34139331468323 11.6671357283790 -0.908519827654275 0.106287424500250
AT4G39770_at 4.49280237105709 4.61370149220321 5.36723128809921 5.46686855858368 6.79285935147054 6.12462328034942 6.99567335254202 7.05718490674664 4.32549787950146 5.15017512728342 7.10320255101938 7.36422117169078 6.57317459252022 6.6952129484499 6.71105871730707 6.66371905531222 5.946835344265 6.8116345340818 5.45185106812918 0.251463573005988 0.241904988532674 0.245663248263652 0.260414765596259 0.244357678687823 0.248804403107810 0.250062686620336 0.26638392361373 0.269906491438498 0.250848331824281 0.255622021296372 0.24692826072505 0.251079768090864 0.254703846362100 0.245542871327175 0.252128175338437 0.26120011010244 0.253814317139211 0.242856148629569 4 4|0 -|/ 18449500 18450228 18449870.4 18448974 18451287 - gene protein_coding_gene FALSE TRUE AT4G39770.1 trehalose-6-phosphate phosphatase, putative similar to trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT2G22190.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) 0.952923047507288 8.7746108851316 2.89769970548077e-06 0.0438248103456912 9.3409550036977 11.7186049364492 0.952923047507288 0.119253035032274
AT1G08800_at 4.87630289206 5.02888470440431 5.7548083665403 5.98452516108903 6.96255896756244 6.5413109566417 6.03056110584154 5.75688079047754 4.28767427639551 5.06791989882645 5.88218141597805 4.87444562651856 5.7459275723626 5.89862412399984 4.03900265642643 5.99105765901536 6.43322850534008 5.36821456175204 4.58874331195755 0.209249378904951 0.207240774492919 0.200973859463809 0.201914109353517 0.203447692725469 0.210270367028164 0.202249898511271 0.201901667576826 0.208327376305499 0.215132428584484 0.200973859463809 0.203987546089986 0.204375981517827 0.216755004599949 0.204218037028035 0.204424424396249 0.206995704747152 0.205333849374132 0.203990599199005 1 1 - 2813605 2814156 2813851.545 2813064 2817642 - gene protein_coding_gene FALSE TRUE AT1G08800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30690.1); similar to Os10g0414800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064597.1); similar to Os01g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044407.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM15784.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.884308129605068 8.76390173744842 2.93199757166672e-06 0.0443405992763158 9.3331567168124 10.9555779985274 0.884308129605068 0.099171317653126
AT1G53645_at 6.6683527760379 6.6607651070186 5.56596842782329 5.61741448789677 4.60537613679154 4.45335820161730 5.58699178938368 6.02451392998854 4.08585649594349 4.05992600691522 3.45027318869275 3.89553807482924 3.71689534929491 3.33603121405097 3.74456344072310 3.58862944667994 3.72386122734432 3.70027247508793 4.23618047701686 0.221187738918472 0.214345009095615 0.214194624939307 0.215078439603558 0.210045867973546 0.220005858614841 0.216257597357627 0.213532822969247 0.219872435381742 0.216467262307346 0.211828390191408 0.214483912191220 0.212913684476546 0.216006245932576 0.221482699727397 0.210302453190167 0.225570553281013 0.217452193031074 0.214889251058858 1 1 - 20030127 20031247 20030619.818 20029815 20032303 - gene protein_coding_gene FALSE TRUE AT1G53645.1 hydroxyproline-rich glycoprotein family protein similar to actin binding [Arabidopsis thaliana] (TAIR:AT1G31810.1); similar to hydroxyproline-rich glycoprotein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45380.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.82871976413946 -8.7560695818676 2.95735894092342e-06 0.0447211819046439 9.32744480090456 9.53375712975958 -0.82871976413946 0.0806589476084426
AT4G17110_at 7.35258165148018 6.63475426394613 6.85391713457956 6.44302198197863 7.23579809805458 7.14582083078268 4.27515518289126 4.02705400858466 5.20524485664453 5.58987627233132 5.90937245424422 5.4323337705992 5.80464967968866 5.94231661678906 6.52206161254995 5.86227766186457 6.59598290191081 5.94576343302059 4.84914649858232 0.234327498918469 0.220841054157144 0.228955598965975 0.223623413508682 0.220841054157144 0.234347145452407 0.226598025143441 0.235545698623532 0.225596938725406 0.226773745501271 0.222538464740640 0.220841054157144 0.229207846567356 0.22784422793317 0.220841054157144 0.220841054157144 0.225519862734716 0.220841054157144 0.221298185118424 4 4|0 -|/ 9613730 9614430 9613966.5 9613629 9615510 - gene protein_coding_gene FALSE TRUE AT4G17110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17120.1); similar to unknown protein [Oryza sativa] (GB:AAG60185.1); similar to Os10g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065419.1) 1.06717106255198 8.75308555641728 2.9670837942149e-06 0.0448652740523235 9.32526666070311 11.8543132151303 1.06717106255198 0.150245047144289
AT3G02910_at 6.78040096133859 7.26255842249038 7.9559059584286 8.07177673288082 7.62726549309964 7.789970668346 7.1671724349707 7.33518999863892 7.23592113740153 7.69894853630938 8.5899265680489 8.19960374070303 8.59537440695355 8.12472134522175 8.24609333803034 8.91782005284375 8.8497046738088 8.18722580992703 7.41495339337329 0.175794203909338 0.154052627526084 0.161943745696726 0.152959735452697 0.157554687787648 0.158470913627100 0.157861927284866 0.166747555577886 0.169877517463048 0.164046886695419 0.155725208421232 0.159866876721015 0.153916556980474 0.166638899907170 0.162795239806885 0.153727085592264 0.155973225924994 0.159786267428752 0.162439557617212 3 3 + 649995 650522 650234.455 649821 650928 + gene protein_coding_gene FALSE TRUE AT3G02910.1 Identical to UPF0131 protein At3g02910 [Arabidopsis Thaliana] (GB:Q9M8T3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46720.1); similar to Os03g0854000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051934.1); similar to Uncharacterised protein family containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22357.1); similar to Os11g0139900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065707.1); contains InterPro domain Protein of unknown function UPF0131; (InterPro:IPR005347) 0.86938348920493 8.74846931315259 2.98219611662425e-06 0.0450908052833587 9.32189502208298 15.4556549659260 0.86938348920493 0.0948814280444647
AT1G28520_at 5.47489092830359 5.7276074233517 6.41778445393088 6.30274711539354 5.98575161218445 6.17040093953063 4.97560319378092 5.19485586102006 4.88876005100218 4.83426465881265 5.56730634913714 5.03891494482917 5.45730375754036 5.27666827600121 5.09594555830016 5.71838643933813 6.22625542222427 5.46531608359677 4.56104948126954 0.214170452262198 0.222428835155810 0.222920925024382 0.226861750968275 0.222258290361131 0.229706838535122 0.220081997431243 0.221758008931721 0.216076131390192 0.212988301962654 0.213544000535656 0.218082928516635 0.216901581081339 0.221530663236985 0.217783554471347 0.213991676501755 0.217771713465885 0.218218552569517 0.218624641945735 1 1|0 +|/ 10030780 10031441 10031137 10029136 10031969 + gene protein_coding_gene FALSE TRUE AT1G28520.1|AT1G28520.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105) 0.797667859410957 8.74528698116941 2.9926626098505e-06 0.0452460659983297 9.31956921410031 10.9022652747198 0.797667859410957 0.0690629752348325
AT1G18560_at 2.98061406482894 2.97577973017743 3.97406373516911 3.5860526949707 3.89313031929454 3.73573427034307 2.626546629064 2.73297228300893 2.90269145814478 2.78886408433221 3.20063935589312 3.67925384452055 2.88509440829427 3.52173449823844 3.37255878308858 3.22906255438770 3.39846184360867 3.66887620508021 2.44966894787260 0.221066105902629 0.210916793898710 0.218678805227064 0.22406021030063 0.212806819650783 0.220666181844716 0.213095837795930 0.213427106375494 0.216710369676397 0.216287807021833 0.210916793898710 0.212960438964343 0.221142965619049 0.214976401311132 0.212579455180434 0.210916793898710 0.222550241351414 0.210916793898710 0.217528660632247 1 1 + 6387402 6387943 6387645.727 6385798 6388073 + gene protein_coding_gene FALSE TRUE AT1G18560.1 hAT dimerisation domain-containing protein / BED zinc finger domain-containing protein / transposase-related similar to Os05g0219300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054942.1); similar to Os01g0111400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041804.1); similar to hAT family dimerisation domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94985.1); contains InterPro domain HAT dimerisation; (InterPro:IPR008906); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656) 0.811992884015137 8.74515556760374 2.99309567317688e-06 0.0452496203870881 9.31947314452597 6.35471255756816 0.811992884015137 0.0747700041643499
AT2G41100_at 11.4411850895726 11.4811801127972 12.1800604277638 12.2060239893304 11.3775461056209 11.1636548870172 8.92070889897624 8.81405132834503 11.6354042182869 10.1364966725317 10.9260124060668 11.2592637200741 9.69069473100642 10.8968665879666 10.6240899966946 10.4861514007973 9.7229914730541 10.7017454175426 10.0922168269428 0.108429486195018 0.105788961430192 0.111748845965236 0.108881087503516 0.107355433959099 0.110281032596309 0.121635054153334 0.117415000939903 0.1106933176705 0.113269662173570 0.106591354757221 0.107037514587535 0.11674392992472 0.105788961430192 0.112576567678951 0.106550926062200 0.116875375891311 0.113377993493583 0.107695235755672 2 2 + 17145942 17146458 17146248 17145157 17146690 + gene protein_coding_gene FALSE TRUE AT2G41100.1|AT2G41100.2|AT2G41100.3 TCH3 (TOUCH 3) encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. Identical to Calmodulin-related protein 3, touch-induced (TCH3) [Arabidopsis Thaliana] (GB:P25071;GB:Q38972;GB:Q39064;GB:Q8H1A0); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin-related protein (GB:AAC37419.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299)|similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin-related protein (GB:AAC37419.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299)|Identical to Calmodulin-related protein 3, touch-induced (TCH3) [Arabidopsis Thaliana] (GB:P25071;GB:Q38972;GB:Q39064;GB:Q8H1A0); similar to CAM7 (CALMODULIN 7), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G43810.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin-related protein (GB:AAC37419.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.742322194536742 8.73621003938113 3.02273471320267e-06 0.0456946806594848 9.31292869671913 21.5279761245466 0.742322194536742 0.0421767267286801
AT1G80450_at 1.30218733235413 1.43407035304657 2.47910803445756 2.79655170239541 2.17145806849553 2.53806699035978 0.760577064543876 1.15285713716186 0.909134228966964 1.11861614074608 1.51580311100675 1.27635831380922 1.3178491766853 1.54336274489535 1.69780406752870 1.01084858466304 1.80855595761718 1.25736213797090 0.753819342412002 0.233434061835341 0.233629770680805 0.235940577557175 0.237278064511752 0.235414401268653 0.241841386553943 0.234338931020507 0.248745534356485 0.239618301365905 0.239059271369748 0.233434061835341 0.236019361361899 0.240976965158368 0.23490084935705 0.238416301303175 0.237102367040426 0.235938801509678 0.233434061835341 0.243455503155465 1 1 - 30249070 30249525 30249324.545 30248822 30249675 - gene protein_coding_gene FALSE TRUE AT1G80450.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G08480.2); similar to VQ [Medicago truncatula] (GB:ABE77905.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.91758816744042 8.73270103597606 3.03444746095971e-06 0.045868707819867 9.31035894204612 3.00720104325871 0.91758816744042 0.110328200722618
AT1G11820_at 5.99741077413882 5.50580468172924 4.66745439700667 4.4568623413229 5.06237346241293 4.59140054999444 7.61418155994878 6.98183535161853 5.40638937473194 6.20898881838508 5.48358482334466 5.69430374949955 5.82641927345273 4.9562521607829 5.72047593956515 5.21795778672746 5.67315553532958 5.30927446485437 6.08632092486431 0.302791364040651 0.316695253467732 0.310427661579488 0.314082035718475 0.308845180547710 0.301890887503505 0.316110668037281 0.321600087417792 0.301890887503505 0.319658001768722 0.304897877968766 0.302923773691312 0.304351282656937 0.304354700763065 0.305483812390194 0.301890887503505 0.319951593791155 0.317123928641687 0.303836592609935 1 1|0 -|/ 3992005 3992228 3992117.833 3991039 3993524 - gene protein_coding_gene FALSE TRUE AT1G11820.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.2); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE89104.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.12283690507025 -8.7256588355381 3.05810189616028e-06 0.0462232101604626 9.30519727716743 11.3025375594490 -1.12283690507025 0.164875125706602
AT2G20060_at 7.47088439348398 7.67317561937593 7.02708342427168 7.28940073467205 6.55935789895547 6.72137388331229 7.7303523879629 7.88633947728447 6.4238746252181 6.57443080354765 5.20456718724538 5.65534678455247 5.76037154460326 5.5807318832573 6.28757871084699 5.6146662660279 6.39232392516397 5.54539068651882 6.6727472314998 0.215604046668422 0.215937395881697 0.219690545375805 0.219478984056836 0.219161854436418 0.217929186520991 0.215604046668422 0.215604046668422 0.229885572642872 0.218612757100789 0.221557224267042 0.223411231425113 0.216290366160992 0.220592674749409 0.215604046668422 0.215951098452893 0.225706858981744 0.223797949390985 0.215604046668422 2 2|0 +|/ 8667375 8668284 8667928.6 8666124 8668570 + gene protein_coding_gene FALSE TRUE AT2G20060.1 ribosomal protein L4 family protein similar to RPL4 (ribosomal protein L4), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07320.4); similar to Os12g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066789.1); similar to 50S ribosomal protein L4 [Rickettsia bellii RML369-C] (GB:YP_538231.1); similar to Os11g0585700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068165.1); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136) -0.79638970705939 -8.72523194535608 3.05954218966464e-06 0.0462419206545914 9.30488419236227 13.4508158158893 -0.79638970705939 0.0692895968369348
AT1G28395_at 4.54374878083784 5.16245775189675 3.47856738563287 3.69943995213971 3.38291483784443 3.82770732966559 5.64697966255004 6.37917317829127 4.21599999738214 4.60354965664087 3.84764612843004 4.24563967902784 3.82523261941388 3.54712614278562 4.69836786409018 4.14571623038191 3.5383449186548 3.79085991248157 4.82771735187567 0.235746553177782 0.231848632562737 0.233946328041169 0.238704580813767 0.229319802153126 0.235519382161966 0.235452574665452 0.247806375574934 0.248766448710880 0.231101989867599 0.240391824519834 0.230531699974816 0.229972679244758 0.230762572308215 0.230039343427967 0.228256109761729 0.236572816672669 0.234151985806709 0.234698673722144 1 1|0 -|/ 9971060 9971293 9971158.444 9969428 9971504 - gene protein_coding_gene FALSE TRUE AT1G28395.1|AT1G28395.2|AT1G28395.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33847.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89009.1) -1.21507739106566 -8.7242884490712 3.06272807094452e-06 0.0462870093361845 9.30419214704394 8.76710145429454 -1.21507739106566 0.186829576753427
AT3G05130_at 3.89971075104451 4.17733055770236 4.54727343683387 4.23339230296697 5.31419975129012 4.81240450572493 3.35226558407164 3.08261291573991 4.06983909543549 2.820155858224 4.11020042565475 4.66897670573435 3.99262759444676 3.68202677085133 4.35116294130182 3.2397537558667 4.24816322079074 3.84687862341468 2.70869722024229 0.235086153592073 0.244988602062171 0.235086153592073 0.242545544165791 0.245641926890128 0.266633514754269 0.24714138179419 0.240204297420512 0.239578900737208 0.243046599941414 0.236555407240092 0.235086153592073 0.242064492928126 0.235086153592073 0.240569201358988 0.239178648261884 0.249587965713692 0.242080185872988 0.243737371711554 3 3 - 1433527 1433998 1433711.6 1433481 1435385 - gene protein_coding_gene FALSE TRUE AT3G05130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27330.1); similar to Viral A-type inclusion protein repeat [Entamoeba histolytica HM-1:IMSS] (GB:XP_653447.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.958373621927374 8.72265269915043 3.06825996297981e-06 0.0463675445605509 9.3029920881389 7.78591763203424 0.958373621927374 0.122380993027097
AT2G47130_at 6.74864644012291 6.97172082063813 6.84545871908082 7.30523660394473 4.66801815559776 5.02809025824536 2.03492226082759 2.22074028924513 3.3754770533653 1.72830132901988 2.21141489129571 3.14608255535319 2.18484203310612 3.21720098348099 2.51116390184347 3.08862644565691 2.84952648872802 3.22488107418434 2.16880532869788 0.369279112092789 0.369834826531375 0.389269843601406 0.383967796636213 0.34256162627168 0.347013071185477 0.339500213276727 0.346028127603001 0.339500213276727 0.345415393758404 0.344572402849711 0.339500213276727 0.339573073141694 0.339500213276727 0.346786509371302 0.339500213276727 0.339500213276727 0.342583051690324 0.344906409583583 2 2 - 19356718 19357166 19356954.364 19356606 19357609 - gene protein_coding_gene FALSE TRUE AT2G47130.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G29260.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.9238581039269 8.71072299173238 3.10893252464841e-06 0.0469790793799622 9.29423023844387 7.84206012699636 0.9238581039269 0.112862709585879
AT1G75390_at 2.93840437253555 2.93910163749812 3.99081298096513 4.25663013133291 3.97718213009558 4.22745124017618 2.84760220736136 2.97799069230982 2.39168554020683 2.42556055024764 2.58391390570795 2.39504391399229 2.02886958027298 2.95047513836761 3.127238201172 3.40619706771181 3.85649796375354 2.67657210767229 2.64422180213526 0.193928938074155 0.194544038135736 0.191696774066562 0.190321240595645 0.212912962057002 0.200659911525962 0.199443304536474 0.192885153302076 0.193746081553640 0.186216981521598 0.198647555359169 0.189385745474644 0.197644447016345 0.189822301073109 0.203633487791841 0.196228939153013 0.206561810916461 0.198730992346535 0.200623629558782 1 1 + 28295921 28296372 28296143.182 28295426 28296669 + gene protein_coding_gene FALSE TRUE AT1G75390.1|AT1G75390.2 bZIP transcription factor family protein similar to GBF6 (G-box binding factor 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34590.1); similar to bZIP transcription factor bZIP124 [Glycine max] (GB:ABI34666.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to GBF6 (G-box binding factor 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34590.1); similar to bZIP transcription factor BZI-2 [Nicotiana tabacum] (GB:AAK92213.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.789094706925484 8.70310908238098 3.13519520892186e-06 0.0473727996068093 9.28862923754579 6.20202539854827 0.789094706925484 0.0670896637063234
AT4G39090_at 12.8911588672841 13.0737093874914 13.3464348548221 13.3697613593665 13.5374544761891 13.4257617460898 12.4977685978409 12.3217315950832 11.7140877841509 12.0877750360855 12.4822773498584 12.4488889980392 12.9346363157010 12.5558414770619 12.0349037914288 12.6486948699558 12.8282130261649 12.7165817742553 11.6197104335261 0.0836675559147262 0.0811007627990366 0.084045512793314 0.085645117181612 0.0848121068840321 0.0837166582017741 0.0811007627990366 0.0812900672303213 0.0997873376242165 0.0824509332363452 0.0811519156222229 0.083175764610734 0.0811007627990366 0.0868145718681807 0.0848397893805437 0.0815269621448769 0.0908043268271303 0.0842210118858083 0.0826063255910136 4 4 - 18215975 18216645 18216182.909 18215550 18217476 - gene protein_coding_gene FALSE TRUE AT4G39090.1 RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Identical to Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19) (RD19A) [Arabidopsis Thaliana] (GB:P43296); similar to cysteine proteinase A494, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT2G21430.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60581.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.748912306456336 8.69567342671452 3.16107444805197e-06 0.0477606738356172 9.28315264918729 25.2521955029687 0.748912306456336 0.0481244797374464
AT2G16990_at 7.6477294854904 7.4063211936791 7.91860756330568 7.76736739173391 8.26116959789695 7.86771113980604 8.07306631803711 7.65933897466043 5.16195925357624 6.0244462918105 7.21640143843324 6.90476046876015 7.78012864707138 6.98041305849743 6.72585754447522 7.14480419682314 8.02964180961025 6.96593424482573 5.75703708400172 0.195442511271553 0.193917385251948 0.195353534635896 0.196123074192936 0.194992469426731 0.19425646670446 0.193453915033025 0.192102139398881 0.227335464811114 0.207773380383034 0.192102139398881 0.192102139398881 0.192102139398881 0.198111205937758 0.193777418781014 0.192102139398881 0.192557268212592 0.208135004161818 0.203614243568670 2 0|2 /|+ 7393668 7394798 7394233.75 7390117 7394936 + gene protein_coding_gene FALSE TRUE AT2G16990.1|AT2G16990.2 tetracycline transporter| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16980.2); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE80432.1); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.913889198242399 8.69454180377422 3.16503316341754e-06 0.0478173210329122 9.2823185918331 14.2583174010053 0.913889198242399 0.110420731798132
AT1G04310_at 1.86926034404359 1.70645425476162 1.79089980944258 1.78994584974006 1.76484934206382 2.08512053647677 1.84903016654355 1.70497425726972 2.99147694432845 2.47829211724942 4.11215035826545 4.55739001513625 3.45664642199433 3.73831593400691 4.46202858711028 4.16662220268291 4.65307406380597 4.11586458114788 2.50542862422643 0.234194551208136 0.232785231940352 0.238626769823183 0.235145848263985 0.237459413092399 0.229981102327782 0.229981102327782 0.241869171129558 0.229981102327782 0.229981102327782 0.232234271282195 0.239846008495716 0.233343709463573 0.236148859777796 0.246830172872510 0.245784762263320 0.232328956848184 0.242900542851413 0.229981102327782 1 1 - 1155186 1155762 1155480.182 1154763 1157710 - gene protein_coding_gene FALSE TRUE AT1G04310.1 ERS2 (ETHYLENE RESPONSE SENSOR 2); receptor encodes an ethylene receptor related to bacterial two-component histidine kinases. similar to ETR2 (ETHYLENE RESPONSE 2), receptor [Arabidopsis thaliana] (TAIR:AT3G23150.1); similar to ethylene receptor [Pyrus pyrifolia] (GB:BAD61003.1); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Plant inhibitor of proteinase and amylase; (InterPro:IPR011052) 0.787318210346752 8.68620642778184 3.1943580062971e-06 0.0482571664011303 9.2761702975881 5.2281471946028 0.787318210346752 0.0669863455984682
AT2G40110_at 6.2588976966706 6.32514584632976 6.17341726429688 6.04798479998117 6.92451958481818 6.58313554364495 3.70894039032765 3.57173765756805 4.49813311763354 4.64161633070449 4.19950216041488 5.09804359060469 4.88968340999537 5.0002222112151 4.13319216553803 5.24191403969961 5.03199826563302 4.49639873259158 4.80758102022386 0.201702267385538 0.197931876343958 0.197357817273507 0.202649179979121 0.205692277811628 0.200896806485253 0.199797701348675 0.203524122784608 0.198610990690606 0.194413091035338 0.197885067364230 0.192992376045281 0.192159669689467 0.199512707574135 0.200621823624031 0.190607070617283 0.221379218830674 0.190607070617283 0.194356545813531 2 2|0 +|/ 16755242 16756370 16755829.375 16755018 16756623 + gene protein_coding_gene FALSE TRUE AT2G40110.1|AT2G40110.2 yippee family protein similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT3G11230.2); similar to Protein yippee-like (GB:P59234); contains InterPro domain Yippee-like protein; (InterPro:IPR004910)|similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT3G08990.1); similar to Protein yippee-like (GB:P59234); contains InterPro domain Yippee-like protein; (InterPro:IPR004910) 0.789171533117758 8.67383776244785 3.23841455901933e-06 0.048919490328546 9.26703157421248 10.4044620870291 0.789171533117758 0.0682392467040646
AT4G21980_at 9.0194770891357 9.02802845606658 9.55524133994697 9.43273598618847 9.5282087005421 9.12674831110543 7.91202155008914 7.5486814542241 7.30446103238293 7.0831374942108 8.03782670763762 7.73295373443366 8.13237349637407 8.23168534178829 7.64901659187979 8.18726248920095 7.82802981850208 7.79206579228399 7.37103726675845 0.220803245495960 0.220134894024354 0.226918251805968 0.223036673621655 0.228266821032949 0.238170415898917 0.212385296516061 0.217630840924111 0.245229345104079 0.218217947614954 0.214598585642474 0.209539893556411 0.218444315023841 0.218218334870697 0.217708126042046 0.209557995346214 0.22418920037706 0.224277435446438 0.21243703057719 4 4|0 +|/ 11655932 11656725 11656425 11655601 11657046 + gene protein_coding_gene FALSE TRUE AT4G21980.1|AT4G21980.2 APG8A (autophagy 8A) Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation. similar to ATG8B (AUTOPHAGY 8B), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G04620.2); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.864852297897682 8.66593904841802 3.26689244133442e-06 0.0493464103263564 9.26118587012806 16.4947830330606 0.864852297897682 0.0960830845293389
AT1G14380_at 7.68503318293773 7.5754293203959 7.6510508283431 8.07686707526688 9.45134058015347 9.05876003208282 7.50693407538518 7.18248946723885 8.7614515900661 7.9611319493913 9.5937718805033 8.86990895775422 8.80735151104938 9.27874871332765 9.1401167492769 9.05944022208074 8.4489475898934 8.97529725928915 7.97061912649517 0.153548884073367 0.152295151131015 0.160665991976334 0.154920158548999 0.153184314053906 0.150792599707252 0.151041404805682 0.159869728413123 0.14947509610001 0.153411746587194 0.147143430674651 0.147143430674651 0.148328760666842 0.148957409369864 0.147143430674651 0.147143430674651 0.151143888887191 0.156235483860120 0.147143430674651 1 1 - 4918418 4918874 4918603.091 4918005 4921591 - gene protein_coding_gene FALSE TRUE AT1G14380.1|AT1G14380.2|AT1G14380.3 IQD28; calmodulin binding similar to IQD29 (IQ-domain 29), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G02790.1); similar to IQ calmodulin-binding re (GB:ABE84487.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.931331711275738 8.6658554414368 3.26719531913534e-06 0.0493477181002202 9.2611239537329 16.6498707780827 0.931331711275738 0.116438435349512
AT3G50070_at 2.54392159299365 3.2220468220261 2.86547454649537 3.39236275426182 4.53584049279257 4.20816631810623 3.0430016287354 2.84794986292234 1.66578831485496 2.9877686874472 4.18285028626700 4.04086839549987 3.49080571846000 3.46745086272576 4.15108531658196 3.15298924922311 3.6325158041726 3.83171318086289 2.4773751095106 0.214051972007754 0.216577473695637 0.218817420545567 0.214110646225891 0.220042136912150 0.232956033716784 0.216414809906684 0.214913333691033 0.229974638722282 0.229384775543456 0.216620197594494 0.215741235358164 0.21430543012007 0.217487154716649 0.216168623690618 0.214051972007754 0.227072118600417 0.216980337601143 0.217780582309532 3 3|0 -|/ 18576433 18577028 18576760.2 18576117 18577763 - gene protein_coding_gene FALSE TRUE AT3G50070.1 CYCD3;3 (CYCLIN D3;3); cyclin-dependent protein kinase core cell cycle genes similar to CYCD3,2 (CYCLIN D3,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G67260.1); similar to cyclin D [Populus alba] (GB:AAO72990.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 1.10151926618226 8.63151584676834 3.39419741314532e-06 0.0512625635307337 9.23562172410299 6.39272661345588 1.10151926618226 0.162605146327847
AT2G35860_at 4.62881714049355 5.38990676446742 2.60478181021316 3.08609538352449 2.66151324673084 3.68979217155563 7.92977628311323 8.95220642535 7.84188979703223 8.34369336728309 8.77541521801946 9.34250226573005 8.45430793770417 8.75540718907152 8.73036964734617 8.31866233572465 6.77361206143265 8.31643481239044 8.14723765508073 0.254479305287511 0.245074806449385 0.250075376548129 0.246769297635734 0.239144707490139 0.246063574382551 0.253144770627552 0.239144707490139 0.244161309324561 0.239144707490139 0.239144707490139 0.239165864371249 0.239144707490139 0.241363675963726 0.242877501891302 0.239584082581203 0.269610800522937 0.247465599574321 0.239144707490139 2 2 + 15067770 15068174 15067950.727 15066842 15069201 + gene protein_coding_gene FALSE TRUE AT2G35860.1 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein Identical to Fasciclin-like arabinogalactan protein 16 precursor (FLA16) [Arabidopsis Thaliana] (GB:Q8RWC5;GB:Q9SJ64); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52370.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11700.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06390.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71191.1); similar to Os03g0788600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051504.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.69611617002732 -8.62822980100512 3.40662718735391e-06 0.0514468837834187 9.23317385115161 13.1400007564607 -1.69611617002732 0.295393773285158
AT3G22150_at 5.3465828253453 5.91885014552148 4.31611935953091 4.19347797700366 5.70210444268327 5.49198334161218 6.10531890511424 6.37979082125267 5.69252161832881 6.41971504167828 4.49070978549141 5.92206261382044 5.15635015895674 5.54216262728664 5.86873510665394 6.0803086778342 5.82540560435742 4.91487658013035 6.86608133492873 0.218560642995116 0.209432510526302 0.218311270136270 0.214435703941418 0.214318734642902 0.222220690202566 0.219032036775598 0.214897804454476 0.233794620761198 0.209432510526302 0.209812861933115 0.210335279738048 0.209835883970247 0.216389780532857 0.217851200436631 0.210484991224747 0.218504396949060 0.213426669442022 0.211908280146564 3 3 + 7814923 7815452 7815187.636 7812951 7815935 + gene protein_coding_gene FALSE TRUE AT3G22150.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to B0403H10-OSIGBa0105A11.20 [Oryza sativa (indica cultivar-group)] (GB:CAH67868.1); similar to Os04g0602600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053774.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.931371999048232 -8.62807235889691 3.40722395945511e-06 0.0514524890117316 9.23305653490805 11.3323696735721 -0.931371999048232 0.117628362947956
AT1G62300_at 6.27370779905778 6.384077343136 6.38375524490802 6.78074886050383 5.74948205367507 6.10027913571998 3.56498518082122 3.70775548613484 3.76164146667336 3.40050650207025 3.40435367626528 4.51051996951259 3.13698813812587 3.74839102410384 3.58033927670274 3.10357619463278 4.25429215092056 3.41471622235375 2.40333441454077 0.263898204684660 0.254604770458609 0.262386086836869 0.256273027968149 0.257091923334814 0.257215234954711 0.254166438032313 0.254166438032313 0.254166438032313 0.254166438032313 0.254166438032313 0.254166438032313 0.259363219979666 0.257591994299552 0.256127741533247 0.254166438032313 0.264659500239662 0.25722239008584 0.258064469059028 1 1 - 23020629 23021040 23020822.727 23020348 23022944 - gene protein_coding_gene FALSE TRUE AT1G62300.1 WRKY6 (WRKY DNA-binding protein 6); transcription factor transcription factor WRKY6 (WRKY6) Identical to WRKY transcription factor 6 (WRKY DNA-binding protein 6) (AtWRKY6) (WRKY6) [Arabidopsis Thaliana] (GB:Q9C519;GB:O04594;GB:Q9C5T1); similar to WRKY31 (WRKY DNA-binding protein 31), transcription factor [Arabidopsis thaliana] (TAIR:AT4G22070.1); similar to TPA: TPA_inf: WRKY transcription factor 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA05066.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.863293912614988 8.62670723196787 3.41240310275926e-06 0.0515272868516649 9.23203919934427 9.0344194926639 0.863293912614988 0.0968530106662667
AT2G21385_at 8.32807654469796 8.05159135389628 7.13446548354781 7.07676276433789 7.54309170703308 7.55822788482974 8.8913098968011 8.60859139783171 8.70158437514622 8.92988872194055 8.28451537354929 8.81445763645868 8.12980557355458 8.36908524827125 8.98313238741519 8.54853768112958 8.05667906311021 8.08959963945713 8.8946578750813 0.139069406039727 0.139987436254119 0.144434594434275 0.148600664579377 0.139239723767588 0.136971692440105 0.139118351238302 0.1412850381548 0.14537947111373 0.137256474069149 0.145366205880531 0.135369506212631 0.147764866236472 0.142510279431302 0.135209487344095 0.137522721149906 0.144066703544338 0.143083463789109 0.134896102749045 2 2|0 +|/ 9157787 9158757 9158269.778 9156723 9158978 + gene protein_coding_gene FALSE TRUE AT2G21385.1|AT2G21385.2 similar to Os09g0531100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063753.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89529.1) -0.787161210195374 -8.62629508371068 3.41396841876341e-06 0.0515475091549087 9.2317320089555 16.5247747455007 -0.787161210195374 0.0692072664074372
AT2G19470_at 6.95389647623114 6.89277087277843 7.03221559612523 6.98184198832026 7.13606004093539 7.05531946539946 6.2917351641028 6.35745174900667 5.00719324343631 5.42634556705102 6.27102031236246 5.98863535732349 6.27734386718724 5.84380603432694 6.02196148458854 5.96906192066451 6.57680653875989 6.13670609849639 5.01106997726518 0.201330854077754 0.199003555049134 0.19954409796726 0.204686719255038 0.197912893262261 0.202276777139659 0.197321190871479 0.197321190871479 0.219279787653230 0.205621371782528 0.202039878199622 0.197321190871479 0.205804092207670 0.204454088440231 0.198668915781643 0.199503270585634 0.203469985656948 0.210396721654449 0.204260110345155 2 2|0 -|/ 8440973 8441843 8441484 8440693 8443628 - gene protein_coding_gene FALSE TRUE AT2G19470.1 CKL5 (Casein Kinase I-like 5); casein kinase I/ kinase similar to casein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72710.1); similar to CK1 (casein kinase 1-like protein 1), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G26100.1); similar to casein kinase I-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.707430239814084 8.60771180708608 3.48535866435248e-06 0.0526219451143938 9.21785967308205 12.4795967345947 0.707430239814084 0.0226374748668610
AT3G01500_at 12.6378881999811 13.0126221279158 11.3578202331906 11.5898699106863 11.7335010966313 11.8403173538791 13.5357099428414 13.8242458885322 14.0143507120333 14.0928431978665 13.9441121258939 14.2881858001729 13.8106312786880 14.0095970543867 13.9724843368469 14.1874748543443 13.3192222983043 14.1644725683185 14.0055455516828 0.0906627838480583 0.0871321850050033 0.093203201184546 0.0956251248502595 0.0877077613085022 0.0965274326570568 0.0872290739796588 0.0871321850050033 0.0965352300416178 0.0908828778715513 0.0898897340191998 0.0871321850050033 0.0875085122148984 0.0885189427236581 0.0899398960013948 0.0871321850050033 0.0963947737139143 0.0943098788062825 0.0894116844053147 3 3 - 195199 196236 195822.091 194731 198026 - gene protein_coding_gene FALSE TRUE AT3G01500.1|AT3G01500.2|AT3G01500.3|AT3G01500.4 CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC ANHYDRASE 2), carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G14740.2); similar to chloroplast carbonic anhydrase precursor [Thlaspi caerulescens] (GB:AAS65454.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.848898336064437 -8.5984421909399 3.52157035647855e-06 0.0531651476717566 9.21092420503399 26.4412980242807 -0.848898336064437 0.0930215540505414
AT4G26150_at 5.5911802376002 5.80139166727174 4.27418319368888 4.65950968883181 6.42562478392565 6.23193751898054 4.24263974044837 4.50711877339109 4.08141252225426 4.2572479090314 2.06404528234601 2.20273480848256 3.21597134049636 1.82826312995795 2.49679872552914 2.48867317077484 3.40885551401225 2.83148477748892 5.57392998837669 0.311021685948139 0.310922171852547 0.310924900983772 0.308053551044223 0.317375358554948 0.317499380494960 0.305432921800994 0.307063077841145 0.309150659546844 0.308861118053885 0.324738459643988 0.308489731506879 0.305432921800994 0.316710952200847 0.33217072227253 0.307449487736668 0.308992366874567 0.327783406161495 0.311997970508062 4 4 + 13253784 13254638 13254247.273 13253219 13254913 + gene protein_coding_gene FALSE TRUE AT4G26150.1 zinc finger (GATA type) family protein Identical to Putative GATA transcription factor 20 [Arabidopsis Thaliana] (GB:Q9SZI6); similar to GNC (GATA, NITRATE-INDUCIBLE, CARBON METABOLISM-INVOLVED), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56860.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87039.1); similar to Os06g0571800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057917.1); similar to Os02g0220400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046316.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -0.854097802286288 -8.5969305120797 3.52751414956352e-06 0.0532513536018109 9.20979218129244 8.81901494227901 -0.854097802286288 0.0948063622444378
AT1G11720_at 6.9139330977423 7.18129044909255 6.566008742716 6.58273262165197 7.05324573430482 6.82027444044038 8.92001665893466 8.6265891332597 7.49020069158834 8.2493156903174 7.11063392750522 7.501240685012 7.09366852118511 7.48958913244062 7.15735739186411 7.78616684656145 7.52278686592329 7.28656952695126 7.76641677226222 0.215316978664245 0.205436232733717 0.214606367319867 0.210248409792013 0.210612488236746 0.214726542020284 0.214373146438845 0.20927165173632 0.234986216311069 0.216872633144479 0.211418346527155 0.203085328971107 0.211625330751282 0.206198192046735 0.219386631508044 0.203085328971107 0.232883682719961 0.220412154309599 0.20912929118069 1 1|0 +|/ 3956137 3956808 3956485.4 3952511 3957044 + gene protein_coding_gene FALSE TRUE AT1G11720.1 ATSS3 (STARCH SYNTHASE 3); starch synthase/ transferase, transferring glycosyl groups Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD). similar to starch synthase-related protein [Arabidopsis thaliana] (TAIR:AT4G18240.1); similar to Soluble starch synthase 3, chloroplast precursor (SS III) (Soluble starch synthase III) (GB:Q43846); similar to Starch synthase isoform SS III [Vigna unguiculata] (GB:CAB40374.1); similar to soluble-starch-synthase [Solanum tuberosum] (GB:CAA64173.1); contains InterPro domain Starch synthase III; (InterPro:IPR009756); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835) -0.81085069459397 -8.59426867504852 3.53800661416587e-06 0.0534062098408337 9.20779818042241 14.9349176915526 -0.81085069459397 0.0797057127457994
AT4G33430_at 7.88843453648097 7.86390783324016 7.79977997890445 7.93033662110098 7.60054534779683 7.66696233375044 5.90311326187585 6.22158474731015 6.56214829634476 6.29563542017535 7.21243531632718 7.32747390663805 6.81007615854339 7.40293185838183 6.91468604387198 7.21032813178672 7.16451346342236 6.77573170419117 6.19913290496231 0.193357984988947 0.191289590405818 0.191330826449432 0.194444934925541 0.196145461676599 0.205568486605115 0.204686495532906 0.193053498716086 0.205359932198148 0.200748919488809 0.190021582209883 0.189032708046028 0.197309422727011 0.193124767189111 0.197028856080571 0.191819771136441 0.204171128234832 0.198907083253165 0.189032708046028 4 4 - 16086679 16087283 16086994.455 16086409 16090774 - gene protein_coding_gene FALSE TRUE AT4G33430.1 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. Identical to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) (BAK1) [Arabidopsis Thaliana] (GB:Q94F62;GB:Q9SZC0); similar to SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G71830.1); similar to SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G34210.1); similar to ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4), protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13790.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase [Cocos nucifera] (GB:AAV58833.2); similar to benzothiadiazole-induced somatic embryogenesis receptor kinase 1 [Oryza sativa (indica cultivar-group)] (GB:AAR26543.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.765056254031293 8.59368477496705 3.54031274319186e-06 0.053437480545738 9.20736066091342 14.0866218892522 0.765056254031293 0.0608113938553678
AT4G22780_at 6.25474414817935 6.49460157353976 6.69209927550942 6.65885031518916 7.06786878738536 6.55674254338877 4.53259692405331 4.57359849342369 3.57236133742112 3.74459770074155 3.71215754371418 4.4233652510664 4.31368927584066 3.8418991980975 3.64144286981353 4.25970466647660 4.7822779397713 3.50586817387121 3.52677595293516 0.247006393452472 0.240797456227389 0.251958866399982 0.243646963896889 0.240834669635274 0.241311200066961 0.249458315031435 0.242383929387754 0.250544982337225 0.241193896252842 0.241342011492493 0.242515719081008 0.240797456227389 0.240797456227389 0.250239535466546 0.240797456227389 0.246651968002195 0.240797456227389 0.258454163047319 4 4 - 11968754 11969359 11969064.182 11968287 11971158 - gene protein_coding_gene FALSE TRUE AT4G22780.1 ACR7 (ACT Domain Repeat 7) Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding . similar to ACR8 (ACT Domain Repeat 8) [Arabidopsis thaliana] (TAIR:AT1G12420.1); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os08g0118100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060867.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.862738615017314 8.58190271244236 3.58719481356174e-06 0.0541415313210873 9.19852338396097 9.94120223018228 0.862738615017314 0.0981340866857169
AT1G52800_at 2.41685840274014 2.59355702226916 1.58107742326636 1.71269909601587 1.76905219577556 1.99545278767693 2.39562982267537 2.90370697053064 2.61136737265356 1.86765374555689 0.929993789406932 1.04339225747239 1.17167555321510 1.19583900744915 1.05019770248174 1.30959022612977 1.40190559590457 1.37456709762782 1.90942251378779 0.241314441477656 0.240592531846512 0.232491669462624 0.235841570538473 0.238824486987485 0.243195840944574 0.240971795262215 0.231569523717798 0.234148402654483 0.242671427661607 0.24406419115187 0.239358063611932 0.236391921891902 0.232885952853704 0.250247379054755 0.234142211572604 0.247601881260148 0.241581728314801 0.236373883410116 1 1 + 19668301 19668947 19668574.818 19667712 19669030 + gene protein_coding_gene FALSE TRUE AT1G52800.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G52790.1); similar to Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD33293.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.878851867912646 -8.57395251210839 3.61920803870449e-06 0.0546210877201281 9.19255063282153 3.82806739730726 -0.878851867912646 0.103536203602557
AT4G20260_at 11.9311402256542 12.0657501610042 12.6902909502047 12.7283395945553 12.8811148511205 12.6750765000195 11.3852749240227 11.4811056491282 12.4598768866761 12.0222831621137 13.3248760065444 12.3013608653529 12.9415196773725 12.7336251514487 12.5650912140686 12.4206730987814 12.3768905013247 12.6083766512236 12.1688572611376 0.0758837411759714 0.0732879087451487 0.0726596828144921 0.0745072816767174 0.0740749373086988 0.0751798887787399 0.0726672261980176 0.0745216382770063 0.0792601686459581 0.0720525735433398 0.0733522934504085 0.0723797872375945 0.0728218787110039 0.0771837822984907 0.0737534899378005 0.0720525735433398 0.0777690338669717 0.0764731310263364 0.0733584381165238 4 4 + 10942099 10943200 10942796.273 10940746 10943571 + gene protein_coding_gene FALSE TRUE AT4G20260.1|AT4G20260.2|AT4G20260.3|AT4G20260.4 DREPP plasma membrane polypeptide family protein similar to DREPP plasma membrane polypeptide-related [Arabidopsis thaliana] (TAIR:AT5G44610.1); similar to plasma membrane polypeptide [Nicotiana tabacum] (GB:CAA69901.1); contains InterPro domain DREPP plasma membrane polypeptide; (InterPro:IPR008469) 0.734966804905758 8.57284082487211 3.62370901867536e-06 0.0546853928008299 9.1917148372402 24.6677903148339 0.734966804905758 0.046177672509711
AT1G13730_at 5.36366359697175 5.69746181484551 4.71986936843956 4.82930972791222 4.97433553051119 4.67929216400271 7.38772796870876 7.21740094272946 4.4181053399498 5.43265839652638 5.14733204851476 5.83916827678729 5.51799936736085 4.74409714547606 5.39261671283223 4.94728593056 4.33234339081349 4.71521459347634 5.47146759468361 0.197152494654671 0.197747530066625 0.206933702634701 0.203766599848488 0.197152494654671 0.202744911089755 0.207054189715503 0.202805551043015 0.206013025467103 0.207783380812044 0.207399911896018 0.197152494654671 0.197152494654671 0.207193027304219 0.203795278805870 0.197152494654671 0.199558574474653 0.198982517916172 0.200974051862704 1 1|0 +|/ 4711393 4712204 4711634.4 4709825 4712547 + gene protein_coding_gene FALSE TRUE AT1G13730.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT2G03640.2); similar to putative ras-GTPase-activating protein SH3-domain binding protein [Trifolium pratense] (GB:BAE71222.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.821882571794874 -8.56762713319303 3.64489891282392e-06 0.055001524594513 9.18779302341997 10.7020914527389 -0.821882571794874 0.0846837522852095
AT4G02590_at 5.68490122831668 6.39609648668138 6.54125290909398 6.78127008435154 7.19391652673599 7.08830535305518 5.59605937909909 5.90719082198335 4.71567918175251 4.49646967509006 5.96723209632994 5.48560015959303 5.15872387502478 5.35835553177626 5.09983090648562 5.61366853905361 5.91920731891427 5.39224725062305 4.22854083733356 0.246247581025693 0.236369659877465 0.253362823862001 0.239664081689397 0.237599959559951 0.257015408782389 0.244436481362328 0.241046923294108 0.243061569771222 0.239380080689397 0.234796118643062 0.234796118643062 0.239831454606042 0.246329087369857 0.237507741788672 0.238798830278227 0.245592379438138 0.24927034527714 0.244048952366124 4 4|0 -|/ 1137970 1139512 1138475.8 1137498 1140491 - gene protein_coding_gene FALSE TRUE AT4G02590.1|AT4G02590.2 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor|UNE12 (unfertilized embryo sac 12); DNA binding similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G03040.1); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 1.01212627547771 8.56712836143125 3.64693306058055e-06 0.0550285729511 9.18741766521119 11.3884181525565 1.01212627547771 0.141795402588867
AT3G52290_at 5.19535668678809 6.13735590573541 4.04890575498306 3.84548275609828 4.45749890100355 4.49048466026820 7.05228696206035 7.41225826282528 6.79873309236374 6.95097375150952 7.31548456333031 8.15386112256582 7.05279337737873 6.9403607624545 7.0532787398923 7.21107952991357 5.15735656291295 6.14234157606715 7.08451872717609 0.246693386036584 0.241940137331864 0.246777028352189 0.253095595586954 0.243272067802290 0.258508118902224 0.244771852505341 0.249057486923092 0.255059801163273 0.242037240835556 0.238365157721792 0.241302290579488 0.242099323964206 0.246565277868406 0.244252398611659 0.242460102187473 0.263915190117068 0.23930468683287 0.242862363519302 3 3 + 19406625 19407111 19406849 19404797 19407381 + gene protein_coding_gene FALSE TRUE AT3G52290.1 IQD3 (IQ-domain 3); calmodulin binding similar to IQD2 (IQ-domain 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G03040.1); similar to IQ calmodulin-binding re (GB:ABE78306.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -1.15257188198302 -8.53656734782322 3.77393959075018e-06 0.0569412005452386 9.16436011976729 12.2414844293857 -1.15257188198302 0.17812115997765
AT3G06035_at 6.24948503713365 7.08390185778955 3.86823663898665 4.23283582160384 4.36044536851303 4.58944139592853 7.8853101049414 8.39603724654282 5.87866912422567 7.30380943589506 7.92217805263198 8.4627455526929 7.10383287862755 7.4873385355977 8.03369930640976 7.09547398486142 6.07515305468732 7.26173724603373 6.77021330648089 0.209690775674031 0.205758030830978 0.218740218540721 0.209934520736037 0.213284566574281 0.225120966863124 0.206518800665633 0.20794501177468 0.224966571694045 0.201951668260541 0.202486216152839 0.203800001217681 0.201951668260541 0.208728151540256 0.205845421322096 0.203177785497851 0.232238631480043 0.215904003778162 0.209500688323288 3 3 - 1823240 1824040 1823473.091 1823105 1824222 - gene protein_coding_gene FALSE TRUE AT3G06035.1 Identical to Putative GPI-anchored protein At3g06035 precursor [Arabidopsis Thaliana] (GB:Q84MC0;GB:Q8H7F7;GB:Q8L9J0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19250.1); similar to Os07g0645000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060451.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07018.1); contains domain PR-1-like (SSF55797) -1.18078560888413 -8.53412158955424 3.78430818001857e-06 0.0570938575119402 9.16250987883263 12.8737952415849 -1.18078560888413 0.184971506571502
AT4G26270_at 8.39041350262476 8.36060409869216 9.04902506457961 8.69853481591284 7.84275836843628 7.49518164797312 5.29931002481212 5.39711218573619 5.72068746364077 5.1846459291648 5.45614867258216 5.46401793177871 5.06007307653693 5.91853080943885 5.17522432704394 5.29765904120173 6.20130356031641 5.65631738517195 4.95656574857658 0.236897460150138 0.248881984149229 0.25048164962893 0.243005449450858 0.246666118125430 0.249402171351177 0.238589760569778 0.243695847576530 0.248873109918321 0.241640701306886 0.248488639032593 0.236897460150138 0.236897460150138 0.247997644363195 0.242820845640857 0.242585770220085 0.247804162603117 0.238650210213637 0.240926140293465 4 4 - 13301113 13302005 13301365.273 13300804 13304356 - gene protein_coding_gene FALSE TRUE AT4G26270.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G32840.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G29220.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE84859.1); similar to Phosphofructokinase, putative [Medicago truncatula] (GB:ABE90419.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE80791.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.825437328986971 8.53027322610306 3.80068531674026e-06 0.0573371386883435 9.15959705686249 12.9745969957473 0.825437328986971 0.0872351471362703
AT3G16030_at 7.60874655522034 7.01406852262381 6.31377379988835 5.92485157352876 6.44855602104535 6.3759841871743 4.35177509487818 4.22412199360753 6.31646561054855 5.16861019565824 3.57496065096776 3.24136278117819 3.79318034711092 3.81644173922478 2.83161929330053 3.20873073299639 3.31848813625509 3.16186380348896 5.70764777459288 0.401110880060296 0.401110880060296 0.401110880060296 0.401110880060296 0.401110880060296 0.46766889071431 0.401110880060296 0.444924582760497 0.461194939115633 0.42410558134102 0.401110880060296 0.442596289773193 0.401110880060296 0.401110880060296 0.446424930589597 0.401110880060296 0.457880577236979 0.419400347316807 0.472069096807771 3 0 / Inf -Inf NA 5439615 5442808 + gene protein_coding_gene FALSE FALSE AT3G16030.1 CES101 (CALLUS EXPRESSION OF RBCS 101); carbohydrate binding / kinase similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to SFR1 [Brassica oleracea var. acephala] (GB:CAA74661.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.948231785437252 -8.52844825496675 3.80847841538882e-06 0.0574508968961404 9.15821509851159 10.5823541164118 -0.948231785437252 0.125564777525856
AT2G41250_at 10.7907551446753 10.7214420813776 10.9572349439725 10.8624280323356 10.3863114674604 10.1144049100595 10.9599593332652 10.7269122876031 10.3393884338285 10.8349977059507 8.95590298044181 8.83998771420355 9.54789346330268 9.10811734783522 8.6399368212378 9.52032713213296 10.0015764624683 9.41115910681504 10.5367196390301 0.0800137713767546 0.0783570994695122 0.0814367694768534 0.0829618922608524 0.0799457070020322 0.0832242493563301 0.0834553314292183 0.0791436368477537 0.090852963571644 0.0796598582842975 0.0818030023022732 0.0810796913359278 0.0847398039828909 0.0877247162104527 0.0884299053652397 0.0804877532652977 0.083359488601596 0.0822862094114605 0.081242667078352 2 0|2 /|- 17208081 17208975 17208395.3 17207737 17209696 - gene protein_coding_gene FALSE TRUE AT2G41250.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G14310.1); similar to Haloacid dehalogenase/epoxide hydrolase [Medicago truncatula] (GB:ABE94184.1); contains InterPro domain HAD-superfamily subfamily IA hydrolase, REG-2-like; (InterPro:IPR011949); contains InterPro domain HAD-superfamily hydrolase, subfamily IA, variant 1; (InterPro:IPR006439); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) -0.768464168827526 -8.52282992182465 3.83257865130763e-06 0.0578106163763243 9.15395803333293 20.6016716358392 -0.768464168827526 0.0652204326348974
AT3G13510_at 4.06241670409971 3.80213362141241 2.99960415602201 2.99912417965861 3.05934061977824 3.83957068089223 4.76214038073208 5.28291012702249 4.90298883957681 4.7292564638604 3.83940798256496 4.71798305859479 4.05241161297886 3.4346101206075 4.02652464187781 3.93774317152258 3.85608928989559 3.84185282979001 5.16437961151372 0.176512443182787 0.178340714657124 0.176779686127641 0.179644537794489 0.17152571697904 0.182240629960286 0.173458902626826 0.176177067110157 0.172439352114818 0.171636431599659 0.16987213636873 0.174386470036401 0.180726422004075 0.181459255644488 0.179231445588332 0.176683407212906 0.180290259073431 0.175030731393005 0.173520428267484 3 0|3 /|+ 4405211 4405697 4405448.3 4403516 4406098 + gene protein_coding_gene FALSE TRUE AT3G13510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55360.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56530.1); similar to Os03g0807100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051640.1); similar to Os07g0573400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060067.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -1.11093538286676 -8.52060461181036 3.84216975175642e-06 0.0579514463657421 9.15227081470668 8.29867313043355 -1.11093538286676 0.168469189890912
AT2G46150_at 3.22937588899898 3.18285839146529 3.60942167794602 3.67923190625732 3.44778890047709 3.54057029855117 1.52625313502124 1.93627233906566 1.68230388415236 1.76881961884262 1.97073805899711 2.23257748519069 2.32600297693223 2.34131506510140 2.46873534574874 1.50603469124235 2.04714438760693 2.09854721209681 1.48510423793826 0.260125408660025 0.266929478602794 0.259216037392629 0.262759103547026 0.275396324885067 0.270514889751089 0.261572193598121 0.263205933760968 0.262297897780526 0.265268654957789 0.267569021177002 0.257017151315276 0.25968939678127 0.257017151315276 0.261331009591730 0.257017151315276 0.259456379360258 0.262137098166756 0.257017151315276 2 2 + 18968603 18968993 18968779.364 18968476 18969449 + gene protein_coding_gene FALSE TRUE AT2G46150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54200.1); similar to plant cell wall protein SlTFR88 [Lycopersicon esculentum] (GB:ABF39005.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.789520456528445 8.51899472644116 3.84912452042197e-06 0.0580524960170041 9.15104982573189 4.90361964214399 0.789520456528445 0.0741840516657859
AT2G19350_at 6.65368059435269 6.90659196457278 7.06265363057862 7.09543860408004 7.99030886910272 7.78112937844819 5.95609330346937 6.18392769392818 5.64525623327245 5.10168088676401 6.1996293392038 5.59624390626039 6.07833014941108 6.15840544456513 5.70087163725251 5.93709922803012 5.81598647343423 5.67178349188556 5.4471988287658 0.251537645385231 0.244097803651549 0.244063087097007 0.241836938766005 0.242650794585741 0.25385278236571 0.247444287152305 0.244285707091782 0.251965050340503 0.243515912842837 0.246875983164113 0.246696203010171 0.241836938766005 0.251299776599563 0.246586619548286 0.241836938766005 0.255570040392194 0.241836938766005 0.246621092257844 2 2|0 +|/ 8383426 8384155 8383682.5 8383284 8384425 + gene protein_coding_gene FALSE TRUE AT2G19350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29850.1); similar to unknown [Gymnadenia conopsea] (GB:ABD66514.1); contains InterPro domain Protein of unknown function DUF872, eukaryotic; (InterPro:IPR008590) 0.777028811979788 8.5109196439631 3.8842148532676e-06 0.0585778442021288 9.14492057894023 12.6001475173280 0.777028811979788 0.0693738967872802
AT4G31130_at 8.5778167619337 8.66427635413213 8.65388506413437 8.92217903052778 8.95254354707744 8.82170137893133 7.81879062536018 7.82482723326639 7.21345724164143 6.77190179603628 7.5634814491444 7.70288592137363 8.19050786437524 7.96106628927145 7.40557464646631 8.13690026237464 8.36568452799203 7.1310064670501 6.82452685773681 0.183711868925488 0.185146319943455 0.193692452883132 0.196653943758673 0.192351981562924 0.199819341327800 0.183711868925488 0.188424776675703 0.218192500396516 0.198086972645279 0.197414888221414 0.190870558625981 0.18892753601427 0.191064491160462 0.190670351425969 0.193799342942475 0.191530319064070 0.198313782492326 0.201010133560922 4 4 - 15137183 15138431 15137528.636 15136941 15138846 - gene protein_coding_gene FALSE TRUE AT4G31130.1 similar to Protein of unknown function DUF1218 [Medicago truncatula] (GB:ABE80387.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.743329654097884 8.50995308792202 3.88843811736780e-06 0.0586376468099064 9.14418639027948 15.9013860295758 0.743329654097884 0.053789951516043
AT3G50930_at 7.22197913442459 8.19100781110277 9.78930804796066 10.0129429822104 6.84613977242644 7.33126008206289 2.92920552996780 3.49886717439781 5.23876359427193 4.54905426911986 3.93827333959775 4.18400069033084 3.63623008608799 3.96178433961172 4.47399989359137 4.50812967212157 4.42101505576913 4.55202246153323 4.10887918175834 0.267809280604073 0.262502361040923 0.278971164510890 0.277971327363903 0.288320756873718 0.269049312719940 0.261234660357713 0.258054210950358 0.262304825704072 0.259585660298072 0.259700857634234 0.254538398988233 0.258388699423899 0.255249783118288 0.254538398988233 0.254915393659566 0.256616898985191 0.254538398988233 0.254538398988233 3 3 + 18941956 18942439 18942132.273 18940507 18942820 + gene protein_coding_gene FALSE TRUE AT3G50930.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50940.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 1.30592370131947 8.49760581922685 3.94282653102154e-06 0.0594538812612738 9.13479729834298 11.3984209621761 1.30592370131947 0.215373830379742
AT1G78080_at 8.1490932176377 8.82204332722362 9.12989035120237 9.33203605212105 10.4429271614999 9.83704787461815 8.67050847276500 8.48681645644412 8.7817984208434 8.74985385776806 9.9273685013493 9.69468429204352 9.69081715875958 9.87142617517786 9.53499975077888 9.93224848891852 9.75833913465024 9.5328884239633 8.63630098071907 0.134953246729726 0.131613215498171 0.133630980478184 0.134096222735637 0.130970182635972 0.135825154331970 0.139289815226212 0.139166513801040 0.155263803293627 0.140768986408793 0.130569226152270 0.130569226152270 0.130974679165012 0.140287271703702 0.134888196773777 0.130569226152270 0.140726415238714 0.133846221506143 0.135700758216916 1 1 + 29370088 29370549 29370285.545 29369142 29370966 + gene protein_coding_gene FALSE TRUE AT1G78080.1 RAP2.4 (related to AP2 4); DNA binding / transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G22190.1); similar to transcription factor DRE-binding factor 2 [Gossypium hirsutum] (GB:AAT39542.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.0867776978022 8.48258862843283 4.01008497793255e-06 0.060464061297267 9.12335240993704 18.3415441527633 1.0867776978022 0.163676890625423
AT2G44500_at 6.32010336038978 6.6693894712504 7.74567606095065 7.7367834212177 6.74806534090785 6.70359642071495 5.40535340245947 5.92124548932718 6.36991024134668 4.66478293997601 7.65826839418743 5.38247182225138 6.90586075592594 6.92315523005111 4.37368851638597 6.33107590926424 6.80423007371212 6.50131653539582 6.20802184759641 0.242686752641697 0.244414189467457 0.260228880841845 0.255369822682485 0.240045637104259 0.256151551231299 0.246627502094226 0.24119054694234 0.258562770086689 0.245166070544634 0.248609014112054 0.243721572397034 0.255105688851717 0.276137917096980 0.250606492668028 0.242270558590645 0.26000286429951 0.24693081831291 0.245602832731159 2 2 + 18382838 18383392 18383137.636 18381368 18383866 + gene protein_coding_gene FALSE TRUE AT2G44500.1|AT2G44500.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07900.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medicago truncatula] (GB:ABE83885.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07900.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.883472054215734 8.47696480703439 4.0355906184756e-06 0.0608445997547566 9.11905916070399 12.7100666613788 0.883472054215734 0.108100586827613
AT3G21560_at 7.42068946787304 7.52998090540102 8.6306769524385 8.81319747120208 6.02453751431553 6.45875683630996 4.13159289158728 3.90470971013448 3.2674955940107 4.04764390365863 3.73070292200643 4.56116452386152 4.23281892093237 3.46010270232202 3.71081284175604 3.59028852093998 3.52417005529399 3.14279305906493 4.1136708216561 0.318661487371784 0.316962113202051 0.31977898441887 0.317542941488815 0.312109111511309 0.322867142510174 0.302074513927830 0.305889134731316 0.319144547953103 0.302074513927830 0.302085554622109 0.302074513927830 0.30731452411712 0.304488225130846 0.30948731963833 0.302074513927830 0.321577978272425 0.316501717905919 0.302358090000983 3 3 + 7596802 7597336 7597061.364 7595812 7597583 + gene protein_coding_gene FALSE TRUE AT3G21560.1 UGT84A2; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid). similar to UGT84A4, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G15500.1); similar to UGT84A3, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15490.1); similar to UDP-glucose:sinapate glucosyltransferase [Brassica napus] (GB:AAF98390.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.83477610165729 8.47290389945966 4.05411685501261e-06 0.0611198657061701 9.11595659450984 10.3911227851814 0.83477610165729 0.0924314032052422
AT2G16750_at 1.53906267694845 1.72923785445271 0.849483130468622 0.84517711188114 1.34141098850108 1.19787803855677 2.9504331152976 2.31926476991774 3.71708149546034 4.68935739314585 5.5877255073887 3.80788621929263 2.82253778520754 3.42445958461059 3.95022557639868 2.32887487829101 1.74178236767024 3.76025308957706 4.11627007852976 0.211275820970406 0.205881640901593 0.207332409409975 0.213357151315246 0.203318298165547 0.208979409643569 0.203318298165547 0.203318298165547 0.204174416509554 0.213415679395511 0.215666075856437 0.208314516078259 0.210522521996922 0.204672631207191 0.211251319411854 0.203318298165547 0.210335942785113 0.206416739967092 0.207017006141622 2 2 + 7280790 7281504 7281145 7278094 7281775 + gene protein_coding_gene FALSE TRUE AT2G16750.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35030.2); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94898.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.911140241563157 -8.46812000544517 4.07605927828921e-06 0.0614465936202099 9.11229902063142 5.39759568496962 -0.911140241563157 0.116752317188341
AT3G20670_at 7.36177014736459 7.44505733630652 6.61848482475925 6.42048991506454 6.20530151366408 6.20205603178473 7.07814595323333 7.55503489118862 7.93312022710751 7.89511284899947 7.41853035983153 7.82903400216824 6.3404923670846 7.01635770172078 7.92440178597343 7.2513388838627 5.95296168348536 6.6014465077263 7.27356846636354 0.191743043957117 0.180562427223870 0.183927512321414 0.193206385899255 0.190510508240291 0.190684060722497 0.188824024634377 0.181177028929185 0.188126445387217 0.183624912591134 0.183152215756703 0.179911683510722 0.206152997091368 0.183835761014797 0.185061236329867 0.180221937088468 0.19943153240557 0.182427299785678 0.185426561446914 3 3 + 7229491 7229939 7229718.273 7229413 7230152 + gene protein_coding_gene FALSE TRUE AT3G20670.1 histone H2A, putative Identical to Probable histone H2A.2 (HTA13) [Arabidopsis Thaliana] (GB:Q9LHQ5); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT1G51060.1); similar to Protein H2A.7 (wcH2A-4) (wcH2A-10) (GB:Q43312); similar to Os08g0427700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061844.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.82859955669017 -8.46661581796941 4.08298504191333e-06 0.0615469165218015 9.11114838856965 14.2320030394899 -0.82859955669017 0.0905147579852543
AT3G21190_at 4.47189184663499 5.11511135929838 2.96864166305945 3.63791494026182 2.98624215408263 3.35335112264542 6.77020409333313 7.27672802106624 5.68928104600876 6.34503689081297 6.7225684773305 7.58362642974139 6.09048377683778 6.29225001845235 7.26243281097739 6.36955760693361 5.5115341812307 6.35394957476754 6.7610771006006 0.270788201396255 0.262317750875684 0.273690982240866 0.282800622471600 0.276122515337044 0.284041532955297 0.262317750875684 0.262442357619013 0.268307355786526 0.267825058903859 0.262317750875684 0.262317750875684 0.262317750875684 0.273963987898761 0.266364756756301 0.262317750875684 0.262317750875684 0.266606849707381 0.262317750875684 3 3 - 7432591 7433163 7432842.182 7432305 7434671 - gene protein_coding_gene FALSE TRUE AT3G21190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51630.1); similar to Os09g0498800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063569.1); similar to unknown [Flaveria brownii] (GB:AAW56451.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -1.20688883983886 -8.45811393686006 4.12236999826204e-06 0.0621364829838037 9.10463953719473 10.9667266693851 -1.20688883983886 0.193712535154353
AT3G54150_at 4.20652184881324 4.69671228408862 6.6197950136964 7.1635159104913 6.27196114521279 4.75043575433141 1.17269282795085 1.86892844548733 2.26124237538251 1.43208759048573 2.13986227126631 2.20608723705177 1.6987620884468 2.37425272747082 1.84741260117947 1.73946278564060 1.66414755285479 1.57400573503401 1.12075145733396 0.273177140749166 0.280817261980437 0.276277650081623 0.277164544413834 0.281113579916698 0.290622733555914 0.273194780860053 0.274748202321487 0.267717983549365 0.275142956897021 0.267869473289005 0.275221122190297 0.284628059229994 0.267717983549365 0.271151593240626 0.268975531552897 0.274672393550931 0.272879595294661 0.270404874989541 3 3 - 20061792 20062482 20062229.273 20061622 20063793 - gene protein_coding_gene FALSE TRUE AT3G54150.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT1G55450.1); similar to embryo-abundant protein EMB-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89030.1); similar to Os01g0716500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044071.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 1.75800921074098 8.44950151067368 4.16268549977995e-06 0.0627399958526834 9.0980368353237 6.34891687006006 1.75800921074098 0.316065411407665
AFFX-Athal-GAPDH_5_s_at 9.80869539284695 9.76804928189554 10.2796931346162 10.1711946418547 10.0306625840574 9.7394532229733 10.0858300312142 10.0458144401465 8.345572113794 8.53932418073349 9.6389462773331 9.96079016055134 9.64543615965761 9.66831752828945 9.99685555393114 9.51283478441894 9.60661680728436 9.39496466313365 8.10031483187685 0.127744510996732 0.127469327523636 0.127941202043647 0.126277482183616 0.123606184549596 0.126288389491220 0.128316036712423 0.130993887931505 0.138929473878029 0.142478835227265 0.124226580752722 0.125273683760378 0.127925942234855 0.130332057773507 0.124509101704172 0.128761891535187 0.130284093267527 0.135327901806279 0.152144544180822 NA NA NA NA NA FALSE FALSE 0.738922571186556 8.43994424038858 4.20792264544301e-06 0.0634176021894716 9.09069889213327 18.9944235665138 0.738922571186556 0.054677652469397
AT2G40940_at 8.48958506727284 8.72942250569252 7.97678157312856 8.02311082055668 8.8149237863044 8.64050242813011 7.24427404098644 6.97203175388313 8.38133510288208 7.22605851486686 8.9616158053955 9.06694958944296 8.53513875429069 8.63707929143648 8.5151463263787 9.17586752751409 8.80772453735646 9.1736975066606 7.8579899638241 0.128679147019700 0.128679147019700 0.130616345828160 0.139292723551656 0.132004853727763 0.129143537196570 0.136387029356525 0.143926126414067 0.142347638902617 0.144964324795292 0.128931006873032 0.129407327418424 0.129372880749146 0.131731218589867 0.136487123627758 0.128679147019700 0.137433671847058 0.129219619409058 0.140060081558858 2 2|0 -|/ 17091742 17092536 17092119.1 17091434 17094375 - gene protein_coding_gene FALSE TRUE AT2G40940.1 ERS1 (ETHYLENE RESPONSE SENSOR 1); receptor Ethylene receptor, subfamily 1. Has histidine kinase activity. similar to ETR1 (ETHYLENE RESPONSE 1), two-component response regulator [Arabidopsis thaliana] (TAIR:AT1G66340.1); similar to ethylene receptor [Carica papaya] (GB:AAG41977.1); similar to ERS-like ethylene receptor [Pisum sativum] (GB:AAB94773.1); similar to ethylene response sensor [Brassica oleracea] (GB:AAC31157.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358) 0.771179600094816 8.42737662353033 4.26821796227488e-06 0.0643220446914824 9.08103219712534 16.4518024692446 0.771179600094816 0.0701260267074285
AT2G27775_at 3.38499878056675 3.06340408969776 2.72013893572507 2.69756549380582 2.18908958734158 2.08556732484118 3.60234094426984 3.65899821487919 2.95306443967154 2.97803556573091 3.04100711711304 2.8001904490182 2.61164225299180 2.38405776478681 2.76590448289751 2.53162894363601 2.47765065530402 2.29200899081966 3.37653173374532 0.216569360249404 0.214266586505312 0.212871547157311 0.207585360784338 0.2108083851213 0.207794524781907 0.216854125688733 0.221536275755002 0.207473631050077 0.216459985946738 0.223359041060879 0.213069739271694 0.216684357506400 0.216363743048111 0.212465456746057 0.209954965289529 0.214641952404217 0.221779534275252 0.216967930975431 2 2|0 -|/ 11849695 11850302 11850116.8 11849344 11850370 - gene protein_coding_gene FALSE TRUE AT2G27775.1|AT2G27775.2 similar to binding [Arabidopsis thaliana] (TAIR:AT2G27800.1) -0.746938876451675 -8.4231326343288 4.28878932167934e-06 0.0646277662883859 9.07776334355107 5.78304054395097 -0.746938876451675 0.0594108558872248
AT3G01410_at 2.0231958267967 2.36141711871217 2.76780533574377 2.80781010833659 2.81047502902180 2.66959656742293 2.69606518545325 2.34092788469013 1.92059818202753 1.8984820356525 3.14247652022647 3.15235831683294 3.64196126548781 3.0601548339894 2.98992486958667 2.91823329445995 2.75953204803153 2.94731150082452 1.72927080108615 0.235709465046713 0.237556761456413 0.244197819038802 0.234906193556306 0.237161302621937 0.240317780018211 0.233722641074434 0.236230681845585 0.256895685146655 0.246785211495599 0.236472700693891 0.240743625986000 0.233138168695235 0.233138168695235 0.237613333982485 0.233138168695235 0.241719951732891 0.242558729211618 0.239284859386920 3 3 - 154266 154865 154493.636 153363 155649 - gene protein_coding_gene FALSE TRUE AT3G01410.1|AT3G01410.2 RNase H domain-containing protein similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to Os08g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061125.1); similar to putative RNase H domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03047.1); contains InterPro domain Ribosomal protein L9 N-terminal-like; (InterPro:IPR009027); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.817781998904695 8.41239746938635 4.34130376590351e-06 0.0654147651446341 9.06948466193483 5.02263384240649 0.817781998904695 0.0885734390432461
AT3G14060_at 3.0310311649091 2.86972382966607 4.38736749991573 4.65434613734127 3.37959612342008 3.61908390955338 2.07494582456233 2.30031026883971 2.22170172428837 2.65360121655761 2.46919694670435 2.46314675525729 2.02408040860963 2.34319946783586 2.55473560144537 2.30911387092059 2.33633914984225 2.45308687412203 1.82095213927839 0.229046934650081 0.229912735088133 0.243569091782080 0.246238284619762 0.231595793799544 0.235089013299539 0.230502106606611 0.226640464380197 0.242810984211797 0.236917393132001 0.228605620757599 0.245204737439687 0.245212702117043 0.231557515267955 0.248648636867172 0.228937437337001 0.23180490994689 0.228813692778568 0.237272255990269 3 3 - 4657224 4657481 4657374.909 4657053 4657608 - gene protein_coding_gene FALSE TRUE AT3G14060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54120.1) 0.78906150159868 8.39815844333475 4.41203184879673e-06 0.0664760838658203 9.05848147496976 5.5901493003011 0.78906150159868 0.0784380990931185
AT4G39740_at 4.85652237057824 4.87027841654958 4.30319075085287 4.60081147693633 3.59469649558819 3.12381394442778 5.22848372804344 5.21622962724087 4.33848682091045 3.93344640167447 3.00708278095561 3.51871558722327 3.61139385623421 3.53876770734253 3.00134953584717 3.6654356632663 3.34424881129849 3.86158349336558 3.68067803261149 0.24656372209246 0.240748946787263 0.23689777926611 0.235063146673390 0.239926208131026 0.237343005287743 0.242666987516335 0.243438612528421 0.243884878181105 0.242962627741115 0.235243656175904 0.24195447133519 0.236360778826227 0.244051455779611 0.238332296662259 0.235540852269463 0.242083933202574 0.24251154170454 0.235063146673390 4 4 - 18435616 18436504 18436116.455 18435288 18437130 - gene protein_coding_gene FALSE TRUE AT4G39740.1 electron transport SCO1/SenC family protein similar to electron transport SCO1/SenC family protein [Arabidopsis thaliana] (TAIR:AT3G08950.1); similar to unnamed protein product [Asper (GB:BAE63404.1); similar to PREDICTED: similar to CG8885-PA [Apis mellifera] (GB:XP_001122061.1); similar to Os09g0370200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063017.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Electron transport protein SCO1/SenC; (InterPro:IPR003782); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.838940970471112 -8.39526509535923 4.42655514430303e-06 0.0666904798040694 9.05624251463571 8.18814131686405 -0.838940970471112 0.0964533897006715
AT2G17290_at 7.59009077825176 7.83414214717184 8.17245857544856 7.92555333244318 7.89837641613358 7.69162762304486 5.69644738261452 5.45687506010167 5.12036318477179 4.23846735466439 4.61948254933657 4.16200262472096 5.11747955907126 5.35477583402995 4.35912697774455 5.30781158313883 5.72755521437574 4.24103776160174 4.28488524201076 0.201908466549644 0.205062224678238 0.204447363942728 0.207457316936038 0.208652937230608 0.201908466549644 0.206509146243980 0.212954596836904 0.223536518998452 0.2115912123573 0.20834729635063 0.207538240059069 0.208671259219275 0.208633558815573 0.209234052030803 0.206224730510688 0.214451542199301 0.211117299021593 0.211619595333970 2 2|0 +|/ 7525470 7526071 7525848.2 7523497 7526715 + gene protein_coding_gene FALSE TRUE AT2G17290.1 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G10660.1); similar to CPK1 (calcium-dependent protein kinase isoform AK1), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G04870.1); similar to putative calcium dependent kinase 6 [Brassica rapa subsp. pekinensis] (GB:AAZ32752.1); similar to calcium dependent kinase 5 [Brassica oleracea var. alboglabra] (GB:AAZ32751.1); similar to putative calcium dependent kinase 6 [Brassica napus] (GB:AAZ32753.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.795434448626369 8.38675712748572 4.46956101524067e-06 0.0673339366946007 9.0496526578777 11.9877285511436 0.795434448626369 0.081292090937482
AT2G45910_at 6.41528326003602 6.54791337817599 6.68829215721923 6.89104982743546 6.6476919031326 6.42697712944801 4.94084240301506 4.89235123526104 3.92632522361158 3.91031943040660 4.15168917475135 4.35059759159567 4.89444340231688 4.42463941873574 4.1999589946135 5.14193450504265 4.74974892925524 4.3451672412898 4.21664549828464 0.214411021350013 0.207985880755620 0.218541859605021 0.207752625288607 0.209312597383302 0.211692402810164 0.210694195232354 0.210566987535436 0.222952352172027 0.216311799367570 0.207322469134013 0.206990606883111 0.211680189969368 0.210817338418754 0.218298653972331 0.206990606883111 0.221375815874759 0.213716474689136 0.208625709536022 2 2 + 18904537 18905228 18904834.182 18901147 18905601 + gene protein_coding_gene FALSE TRUE AT2G45910.1 protein kinase family protein / U-box domain-containing protein similar to protein kinase family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49060.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain U box; (InterPro:IPR003613) 0.739457104142978 8.38639982375611 4.47137694363485e-06 0.0673568222789154 9.04937570742659 10.4563180573659 0.739457104142978 0.0573351349349278
AT2G26510_at 9.18128759439472 9.27577210444396 9.51369276006846 9.2872458739082 9.6938278518839 9.58270661503782 8.27806917198704 7.98561931231875 7.64310057286448 7.5189076630409 8.13936344320648 8.02736767811486 8.33972418905126 8.16393909306295 7.92911261652904 7.90955735259028 8.53634697847372 8.20822873502593 7.23998154231725 0.191740124858489 0.198102492462722 0.195277420970036 0.199798249260998 0.204660567789052 0.202967149619355 0.193962156098344 0.191713465489265 0.200556687766989 0.191272126809753 0.188350834561634 0.190607841828930 0.185715050669971 0.187954305975514 0.187130418235467 0.185366982594410 0.192220096058508 0.185366982594410 0.202579383230577 2 2|0 +|/ 11283557 11284518 11284123.6 11281023 11284708 + gene protein_coding_gene FALSE TRUE AT2G26510.1 PDE135 (PIGMENT DEFECTIVE EMBRYO 135); permease permease Identical to Nucleobase-ascorbate transporter 3 (AtNAT3) (NAT3) [Arabidopsis Thaliana] (GB:Q8GZD4;GB:O48718); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G34190.1); similar to Xanthine/uracil/vitamin C permease [Medicago truncatula] (GB:ABE81237.1); similar to Os12g0583900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067149.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.764278157060543 8.38579946303577 4.474429956165e-06 0.0673983384297134 9.04891032415978 16.9117951289209 0.764278157060543 0.0688053601498553
AT4G01440_at 2.7958316829693 2.82612028828409 3.77055816532766 3.90947435005097 4.87899295007591 4.1431622017754 3.36114502564987 3.289642481711 2.01288200615527 2.73341546882684 2.99529817951015 3.30662116349489 3.42429088438175 3.29103853950217 3.15553893480018 2.94163040075954 3.59476376912323 3.03314686792258 2.54213332041522 0.235950918491874 0.229884320683857 0.234657803878062 0.238105373789635 0.234544358080021 0.245413843003965 0.237401079619129 0.232685230104402 0.244016938453422 0.238576519419138 0.234721016853791 0.233160764215852 0.233427145916591 0.230324449864603 0.236433906996278 0.230019424806607 0.230051006124763 0.230544023779626 0.231848342781403 4 4|0 +|/ 597775 598488 598011.5 596399 598718 + gene protein_coding_gene FALSE TRUE AT4G01440.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G01450.2); similar to Os06g0109200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056574.1); similar to Os04g0422300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052789.1); similar to H0523F07.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67024.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.94783810389581 8.3758913773427 4.52514178555786e-06 0.0681576855740726 9.04122325104947 6.44549990534849 0.94783810389581 0.130283225270151
AT3G61100_at 3.16634778176856 3.45999397548945 2.61418109256814 2.55700989239151 2.72835483464095 2.64698754413466 3.19007260044282 3.38778891363512 3.75314211910309 3.27300360639437 2.69924268900129 2.84796884001703 2.87791297938735 2.97060554891455 3.17708052151005 2.6584234474429 2.63209231990781 2.79084904178269 3.97667874049664 0.191470831346142 0.195457484143217 0.189895707675561 0.193203343897837 0.190531364013135 0.193175516749270 0.191128889691257 0.193220564006936 0.193046082556236 0.188322251941960 0.197846879363956 0.194857181861635 0.193843403829495 0.195430491208908 0.198931181245246 0.192072031645275 0.207371416551439 0.198657199449178 0.196282813195188 3 3 - 22621557 22622087 22621825.091 22621412 22622296 - gene protein_coding_gene FALSE TRUE AT3G61100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61090.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) -0.75012685436804 -8.35818498564702 4.61731842943785e-06 0.0695414328657635 9.02745493282985 6.21853211879731 -0.75012685436804 0.0636335458274302
AT1G70280_at 5.43274402067361 5.25771221544877 3.65117739709705 3.92268420458599 4.29769353881166 4.89193285488998 6.34318328852755 6.31394980943657 6.18662385521885 6.52090422671575 6.23768634209288 6.75820954457842 5.96152086357068 6.26077906614129 7.13738959491926 6.0504411250996 5.81878700792865 6.37666450257957 6.73077620579829 0.207982199830138 0.211439209502882 0.215302645481227 0.224335816721264 0.211174763430488 0.211237581102411 0.206517951072388 0.213952551473490 0.210528074419790 0.206591906212544 0.207414748720932 0.204616629175361 0.203906180046130 0.212482987974908 0.205031181834768 0.204225419268769 0.219031401235792 0.204085234741221 0.204010995104113 1 1 - 26469771 26470250 26470000.273 26469556 26472369 - gene protein_coding_gene FALSE TRUE AT1G70280.1|AT1G70280.2 NHL repeat-containing protein similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G23880.1); similar to Os06g0269300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057356.1); similar to NHL repeat [Medicago truncatula] (GB:ABE85368.1); similar to Os02g0730400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048013.1); contains InterPro domain NHL repeat; (InterPro:IPR001258) -0.900137670694646 -8.35329432340697 4.64313410152427e-06 0.0699255995689555 9.02364497748173 11.4161944254046 -0.900137670694646 0.117157756946608
AT4G33960_at 7.47662589028331 7.43736138836051 7.5516811116355 7.47187022509268 8.2187530660987 8.42181293130644 7.02588680751454 7.60672774123368 7.34306333181175 7.45770209552709 8.86965807226249 8.31782948072212 8.27966990344933 8.441489482694 8.34608898263861 7.85301787281036 8.49759517172192 8.35068366369122 6.68922640284189 0.172224254139793 0.167641095896966 0.167836893119674 0.170966434720064 0.167601411758885 0.167336356693616 0.164640286120918 0.167315654145707 0.168424738221956 0.170245969179071 0.164640286120918 0.164640286120918 0.175549536677924 0.166197857972989 0.168442155077874 0.170053084953275 0.171993519205776 0.169722863684550 0.173144813610686 4 4 + 16277405 16277574 16277474.909 16277371 16277784 + gene protein_coding_gene FALSE TRUE AT4G33960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15830.1) 0.867776172686916 8.34193801828343 4.70368178489329e-06 0.0708327439987081 9.01478636662682 15.4177572395952 0.867776172686916 0.107589488496724
AT2G02760_at 11.3830774242327 11.5759777995592 11.8861058505963 11.8813062716989 12.0334528948723 12.0003192396267 10.7873702177176 11.0261854687481 10.5513687702710 10.7566646180862 11.6261514224014 11.1068094872257 11.6140871840233 11.4621558384095 10.9889541149156 11.3898032932396 11.5436338457641 11.4910000942362 10.8054057140433 0.097549914837861 0.0947429612028444 0.0987181575666515 0.0972326933635866 0.0947429612028444 0.0990547699052712 0.0983010993773792 0.096043401293263 0.111320669101614 0.0986569747114808 0.100360915515243 0.0972681845134281 0.0967321492832833 0.106986026380058 0.0975835493924267 0.095068128771321 0.0998287521672403 0.102471477917904 0.0947429612028444 2 2|0 +|/ 774320 775124 774774.444 773683 775370 + gene protein_coding_gene FALSE TRUE AT2G02760.1 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. Identical to Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 2) (Ubiquitin carrier protein 2) (UBC2) [Arabidopsis Thaliana] (GB:P42745); Identical to Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC 6.3.2.19) (Ubiquitin- protein ligase 1) (Ubiquitin carrier protein 1) (UBC1) [Arabidopsis Thaliana] (GB:P25865); similar to UBC1 (UBIQUITIN CARRIER PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G14400.2); similar to ubiquitin carrier-like protein [Solanum tuberosum] (GB:ABC01903.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.727744022930485 8.33903916805377 4.71927352607348e-06 0.0710628207556145 9.01252245248376 22.625376451295 0.727744022930485 0.0534411614467749
AT1G73805_at 5.30214006151542 6.5390994181001 8.04638204276028 7.49428019701605 5.76225459846943 5.25011075943363 1.19728378877389 1.39372593643016 3.08226487105746 1.61460583726396 1.86640499984437 1.72132796578536 1.91416941173898 1.96542844377080 1.48943065966531 2.39827043561606 2.11300303850794 2.21158036362756 1.59848061190592 0.323979406967335 0.326026388256512 0.33389836902975 0.334826311620566 0.329490909009558 0.332769394318444 0.312944998926407 0.312203617191552 0.312203617191552 0.316638886822682 0.312203617191552 0.312203617191552 0.312203617191552 0.312843866863802 0.314164363800885 0.312203617191552 0.322572880633701 0.312203617191552 0.316242174113893 1 1 - 27751223 27752379 27751563.636 27751150 27752839 - gene protein_coding_gene FALSE TRUE AT1G73805.1 calmodulin-binding protein similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G18750.2); similar to putative calmodulin-binding protein-related [Medicago truncatula] (GB:ABE78901.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR012416) 1.44584803647936 8.33663781669331 4.7322316574401e-06 0.0712532120660756 9.01064625782382 7.15236077776003 1.44584803647936 0.252906571714441
AT2G34490_at 5.90926619861869 6.40631815364075 4.1076194609482 4.53958685619212 5.16290143850337 5.52336330237094 4.81978047581218 5.6758573443466 1.5759642933893 3.62200531284702 5.59557702315931 5.81764408620336 6.59927753574329 6.64445945352603 4.94751529978887 5.35922527236920 5.84916121073188 7.03914910941542 2.92021227490308 0.228039417840752 0.220232727145301 0.242536551144067 0.215400837646864 0.221014298191781 0.220568656570467 0.221984640398196 0.227127037689330 0.265431233565610 0.223493789324313 0.224300257233421 0.227303551440669 0.22038064869792 0.226409423606852 0.219710343975887 0.215400837646864 0.233105600020626 0.232106004395732 0.230470672960401 2 2 - 14542954 14543493 14543221 14542724 14544511 - gene protein_coding_gene FALSE TRUE AT2G34490.1 CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2); C-22 sterol desaturase/ oxygen binding Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH. similar to CYP710A4 (cytochrome P450, family 710, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G28860.1); similar to CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G28850.1); similar to CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1), C-22 sterol desaturase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G34500.1); similar to cytochrome P450 monooxygenase CYP710A15 [Medicago truncatula] (GB:ABC59097.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.20300135910990 8.3335150622085 4.74914006792079e-06 0.0715030528626154 9.00820532411598 9.61186752926092 1.20300135910990 0.197043602552969
AT1G79720_at 5.29093451794022 6.21917684791299 3.75634217181083 3.91701747821137 5.55365204047028 5.22571498917236 6.79025543523333 6.62004977964901 7.43231279026973 7.11179026042868 7.30834786900092 7.13169731242128 6.32342735518353 6.89470999560189 7.28398461777398 6.49795753931725 4.51824014459428 6.84230279774256 7.08349796104352 0.239973306497263 0.233831108899386 0.268358313392908 0.268265535632668 0.235700286690346 0.243611003123324 0.230353607832272 0.238537422159032 0.255326082228203 0.235662169678255 0.233441565325326 0.230353607832272 0.245030631711761 0.262737304160026 0.236340934029744 0.240633309872456 0.275976070588292 0.243407156346729 0.234452651733867 1 1 - 30002271 30002720 30002499.545 30002020 30003938 - gene protein_coding_gene FALSE TRUE AT1G79720.1 aspartyl protease family protein similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] (GB:BAC22609.1); similar to Os08g0267300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061407.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -1.11301967928026 -8.33330395216173 4.75028549069977e-06 0.071515548062485 9.00804026279977 12.3262848031509 -1.11301967928026 0.175115847804963
AT4G00660_at 6.92883679649413 7.09990365173942 6.8015052115224 7.02843775612726 7.36750957106679 7.20982108508573 6.30181265209293 6.42132897299032 5.06617680037334 5.15536026760076 6.4374447057302 6.6437966336215 6.17466600468296 6.58453612690418 6.42403380590864 6.63280979553117 6.3164921364226 5.89370646448441 5.74704514139214 0.167213075009342 0.165231933423096 0.167128701093151 0.166450387353578 0.166436402718543 0.163689995482191 0.167751113389954 0.171870288138794 0.185696543328416 0.165237443307228 0.165778689649526 0.170647639439584 0.167399955175617 0.16396308034036 0.169048251886672 0.165274705188558 0.174714671625152 0.167109550551920 0.167532256527666 4 4|0 +|/ 276423 277394 276779.778 274257 278737 + gene protein_coding_gene FALSE TRUE AT4G00660.1|AT4G00660.2 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 8 (EC 3.6.1.-) (RH8) [Arabidopsis Thaliana] (GB:Q8RXK6;GB:O65275;GB:Q9ZS12); similar to DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana] (TAIR:AT3G61240.2); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT2G45810.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84720.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84723.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84719.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.739711430163319 8.32967084604763 4.77004446474836e-06 0.0718082493723218 9.00519874187781 12.7505426849479 0.739711430163319 0.0599259236923466
AT2G41410_at 10.2495074519216 10.2968921360520 11.7140335006254 11.571600879787 11.5077389435351 11.0897599685538 11.3843679621889 11.1052692553961 9.43535672069421 9.49771463281006 10.0450098689669 9.89180844556144 10.4392315242798 10.0700584926108 10.0034379843895 10.0998709607004 10.4974475311475 10.0614042778414 8.72682963951866 0.122322344676291 0.121962057280794 0.130439088936188 0.129457278730481 0.127421483389032 0.131593645350815 0.131105553819640 0.125054709940186 0.136371304043821 0.124904566352305 0.119913223190928 0.121143596547100 0.119655784221193 0.120569545296963 0.1240305529796 0.117884957572481 0.118416241067210 0.126446256745143 0.131743246422445 2 2 - 17269181 17269735 17269488.182 17268806 17269962 - gene protein_coding_gene FALSE TRUE AT2G41410.1 calmodulin, putative Identical to Calmodulin-like protein 1 [Arabidopsis Thaliana] (GB:P30188;GB:Q8LFR1;GB:Q9SLG7); similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G10190.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE94192.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.81517037987429 8.32192685531273 4.81245745665308e-06 0.0724419220949988 8.99913638903359 20.7941465789383 0.81517037987429 0.0907728825236114
AT1G72800_at 3.72737671090263 4.24665845837929 6.26931718785668 6.49857488891773 6.04456709233095 6.09661219050336 5.66262494374148 6.05345086594892 4.63814699480906 5.61083806245326 6.06673728495054 4.96593919573975 6.04024729671437 5.24999819590613 4.97709100476501 5.66206285234379 6.50836178603041 5.70355826741637 5.17912783905399 0.241026186888021 0.25027331762893 0.241328639846731 0.243927290350455 0.250217571584718 0.242985750010058 0.237552253255607 0.238097575466284 0.248502559166696 0.242634457937873 0.246433939573020 0.236838156832393 0.236838156832393 0.254346747961967 0.250769134462286 0.236838156832393 0.270316843851644 0.250295409958697 0.239389982351788 1 1 + 27401483 27401906 27401721.545 27400878 27402162 + gene protein_coding_gene FALSE TRUE AT1G72800.1 nuM1-related similar to nucleolin, putative [Arabidopsis thaliana] (TAIR:AT1G48920.1); similar to Os04g0620700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053909.1); similar to H0714H04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66982.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.904392640935145 8.31688052951501 4.8403144971219e-06 0.0728564138106788 8.99518176338018 10.9696246844503 0.904392640935145 0.119603963835465
AT4G30450_at 6.86008580166966 7.70039587502717 5.37477241527328 5.54171833600853 6.10276918434583 5.72950966204599 8.14955485647033 8.60476313210663 7.257874849049 6.8882055299202 6.33586252871313 7.6963796135818 7.44998921334829 7.55818688218907 7.22595377184821 7.78779680044834 6.97882100706534 5.77979347510399 7.50365252245503 0.214467004941168 0.210280086023512 0.250113648307998 0.216635914354057 0.213072800737598 0.237020080253712 0.215321377590613 0.215562531195435 0.216556303131234 0.212434559578178 0.209081546620045 0.212080387350337 0.208828236629033 0.21556782130171 0.211724323627057 0.210417304426557 0.215693163995818 0.217373141643637 0.208854306443596 4 4 - 14886318 14886587 14886433.909 14886033 14886681 - gene protein_coding_gene FALSE TRUE AT4G30450.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30460.1); similar to Os09g0425200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063219.1); similar to putative cell-wall protein [Pinus taeda] (GB:AAW59296.1) -1.12824361958542 -8.30359524985944 4.9144881001843e-06 0.0739679603958739 8.98475496015928 13.9170339305411 -1.12824361958542 0.179887738848937
AT1G14150_at 9.99359446840137 10.1042816841545 9.30598482893888 9.32070555459011 9.76658824061735 9.52556186580242 11.2116732243406 11.1356566680643 11.0629457049508 11.0176678107601 10.4499102995274 10.7587254679982 10.4592032739589 10.7364928049683 10.6154552114716 10.8691754875290 10.6149786840871 10.6703005897054 10.7513824679499 0.102396913209170 0.0988804380332242 0.107416940356565 0.109535125343324 0.102213562632485 0.108942188481650 0.101261170539660 0.098414664668204 0.102715851158446 0.100570236969856 0.100645923052764 0.098414664668204 0.0999501774604236 0.104268631947423 0.0995919864629148 0.098805445085991 0.105724227519190 0.0992935406620986 0.101098233273285 1 1 + 4839937 4840558 4840190.727 4839850 4840748 + gene protein_coding_gene FALSE TRUE AT1G14150.1|AT1G14150.2 oxygen evolving enhancer 3 (PsbQ) family protein similar to PSBQ/PSBQ-2 (photosystem II subunit Q-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G05180.1); similar to Putative oxygen evolving enhancer protein 3, identical [Solanum demissum] (GB:AAW28572.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797)|similar to oxygen evolving enhancer 3 (PsbQ) family protein [Arabidopsis thaliana] (TAIR:AT3G01440.1); similar to Putative oxygen evolving enhancer protein 3, identical [Solanum demissum] (GB:AAW28572.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) -0.714404911283748 -8.30112214636636 4.92843069955103e-06 0.074172882028243 8.98281147280457 20.8408952611767 -0.714404911283748 0.0478146590284098
AT2G38610_at 6.4224019417082 6.39674360201685 6.6964627702062 7.04346257769062 7.15550913312875 7.5746772941649 6.27950015308801 6.6378806403883 6.57654447267076 5.97614874627403 7.92939414469567 6.92936906732856 7.26713293629578 7.67846501931721 7.48917575377867 7.3761127278714 6.96717439463919 6.58116829974185 6.05841680993726 0.193160141280503 0.194496290097162 0.19354523171012 0.196450550294937 0.199995014233495 0.195434248882387 0.203992604085136 0.201888387065465 0.204733979649166 0.215769639186127 0.202170243320082 0.194411472789349 0.191735913686192 0.193916880685636 0.198178601130514 0.191735913686192 0.217725834954198 0.195742382032241 0.212846601945884 2 2 - 16154661 16156047 16155435.818 16154191 16156951 - gene protein_coding_gene FALSE TRUE AT2G38610.1|AT2G38610.2 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08620.1); similar to hypothetical protein [Nicotiana tabacum] (GB:BAD06470.1); contains InterPro domain KH; (InterPro:IPR004087) 0.878471029747568 8.28332144025177 5.03005357054438e-06 0.0756972761831223 8.96879960455145 13.5163059570086 0.878471029747568 0.112845141670555
AT2G04070_at 2.55227821154478 2.70003764145677 5.14985912005846 4.79204633316897 2.52624590160567 2.55249630296224 1.99496092725607 1.94465755948551 2.09453136006021 2.16917219969899 1.93693550091877 1.83549761175995 1.82079520588987 1.79947543580548 2.19616659687776 2.03483801049441 2.25924181094248 2.05575469572969 1.57247603914355 0.241497740507864 0.247792760634233 0.265542996428943 0.263858748596783 0.234044693781295 0.241582444590341 0.235777293258758 0.234357023001191 0.250546528820364 0.234201948934509 0.234044693781295 0.246538701800159 0.237936264818383 0.240611474253024 0.240345759791686 0.234806422495601 0.239353196805918 0.24070752944394 0.234044693781295 2 2 - 1354076 1354379 1354247.727 1354015 1355787 - gene protein_coding_gene FALSE TRUE AT2G04070.1 MATE efflux family protein similar to ATDTX1, antiporter/ multidrug efflux pump/ multidrug transporter/ transporter [Arabidopsis thaliana] (TAIR:AT2G04040.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04080.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04050.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.752061619215549 8.27922473250608 5.05375995096375e-06 0.0760489797421025 8.96556909893197 4.99543840378558 0.752061619215549 0.0677089175805829
AT4G23700_at 5.71317641722402 6.0788716283479 7.74911393113891 7.58635350571681 3.92320744534957 4.12368843030566 1.95277731823092 1.46111244557177 2.40731940563968 1.92940562502058 1.39022642863599 1.88152645069636 2.01104112619675 1.70954797284795 1.58451707837374 2.18546021154056 1.77440146819312 1.84278318251876 1.87846645608991 0.276067535623932 0.282868253915436 0.265948457897364 0.278141971787698 0.260983655537582 0.280586004715257 0.260400186409459 0.261551181505306 0.261126005948381 0.260246581350172 0.264057932377313 0.263295213838056 0.265356244906786 0.261080654031809 0.263975320734242 0.260246581350172 0.260246581350172 0.277984226902056 0.265293821081167 4 4 - 12342552 12343119 12342838.545 12342438 12346053 - gene protein_coding_gene FALSE TRUE AT4G23700.1 ATCHX17 (CATION/H+ EXCHANGER 17); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX18 (cation/hydrogen exchanger 18), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G41610.1); similar to ATCHX19 (CATION/H+ EXCHANGER 19), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G17630.1); similar to ATCHX16 (CATION/H+ EXCHANGER 16), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G64170.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79745.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79743.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79742.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.884906935038052 8.27565762121626 5.07449990514344e-06 0.0763560000726933 8.96275445108578 6.75812188296509 0.884906935038052 0.11507171147688
AT2G23470_at 5.42162963298189 5.2864198161072 5.15524093233796 5.00530626055056 4.99359921360441 4.8704397135227 6.19036677396095 6.1210123170194 4.39970063764111 4.93192787810069 4.28877664659173 3.693542540431 4.14295843842033 3.51088498981524 3.83297120832489 4.26965368965814 4.56855131358558 4.16043696439118 4.81905701661988 0.249670089473743 0.239702224176232 0.243130685903529 0.238261613145335 0.239515945821775 0.244414837360256 0.248767386840648 0.245841807930824 0.249618864075045 0.24472837101879 0.245262635654661 0.241843796294675 0.240947285580421 0.240887463558276 0.249469286766428 0.243341706992232 0.242331089437349 0.241931221669578 0.238521504782571 2 2 - 10006318 10006920 10006650.545 10006062 10008589 - gene protein_coding_gene FALSE TRUE AT2G23470.1 similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to putative glutamate/ornithine acetyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55003.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) -0.703566904282541 -8.27165340929999 5.097890705347e-06 0.0767028635526509 8.9595929519054 9.76818540818871 -0.703566904282541 0.0426503053160816
AT1G11050_at 5.5863088371965 6.12678158305992 7.05764624237727 7.6023133304801 7.33490777053901 7.12309700189647 5.27040647444754 5.69924041572521 4.69112771950585 4.75369191795763 4.51102779777058 4.85758427900875 4.74576559503675 5.2141484714309 4.68969823317192 5.93614573399409 5.80011915683827 5.33728856840559 4.60030537514826 0.257757457678153 0.243083432014284 0.253706102395502 0.256902789486888 0.246437532921956 0.256389151294476 0.253536731992034 0.255029166370885 0.257797659039737 0.248435892403372 0.249882863305899 0.248026306278201 0.246806049981057 0.246317600919014 0.251388710049057 0.243083432014284 0.258339646926503 0.243083432014284 0.244319488301247 1 1 + 3683253 3683715 3683474.455 3681888 3684169 + gene protein_coding_gene FALSE TRUE AT1G11050.1 protein kinase family protein similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to Os01g0883000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045011.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794) 1.03178532531789 8.26979340702244 5.10879554161756e-06 0.0768618289236361 8.95812369568439 11.3841779904624 1.03178532531789 0.156471982591474
AT3G14840_at 9.94090886854112 10.0218679444250 9.88164561842482 9.7724089933023 9.66915968800606 9.4416408487469 8.16987981132898 8.0870222114819 8.79308033700502 8.48747649573105 9.38055772553122 9.72200757798344 8.78225464409496 9.563276793728 9.44841987686364 9.26973388686774 9.02916243117152 9.67920179056325 8.43466406089824 0.109839775020943 0.109674132343348 0.111972606255466 0.110353683529058 0.109542434062932 0.106257197787328 0.116422994391891 0.117209946212954 0.111738639988359 0.115290430538844 0.106257197787328 0.107089986957471 0.108990603358503 0.110946167214900 0.10714366889934 0.107671868079261 0.116324825056637 0.109559723780116 0.108331941981802 3 3|0 +|/ 4993135 4993866 4993550.7 4988114 4994065 + gene protein_coding_gene FALSE TRUE AT3G14840.1|AT3G14840.2 leucine-rich repeat family protein / protein kinase family protein similar to serine/threonine protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G53420.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1)|similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53440.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07650.1); similar to serine/threonine protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G53420.1); similar to H0818E11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86064.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.711940310574073 8.2677137174363 5.12101816948895e-06 0.0770405973417918 8.95648037488787 18.3386003173964 0.711940310574073 0.0480572571783785
AT3G47680_at 3.14454226562248 2.74395020629485 4.48157718439215 4.08420799235952 4.29036555931286 3.80506655605274 3.06002170308348 3.02098716686418 2.62919338180643 2.79084104341035 3.61874886476215 3.44684542499411 2.86830064054877 3.44984724652766 3.24783070588701 3.99611014857757 3.62663949105341 3.38500568797096 2.87834157309960 0.224381930341997 0.222647282658671 0.224641083110803 0.226774142985508 0.241295118150413 0.232228732963756 0.226266208962844 0.227161511478664 0.243822727507444 0.222071489031465 0.219095792046721 0.220392201149689 0.223133691041598 0.226963881027599 0.219539250621395 0.234407937438498 0.230510390702914 0.230439809235246 0.224899268435327 3 3 - 17588500 17589032 17588838.2 17588468 17589376 - gene protein_coding_gene FALSE TRUE AT3G47680.1 DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16140.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.930859840540575 8.26631973405233 5.12922846321094e-06 0.0771589837720822 8.95537857006581 6.68936050877895 0.930859840540575 0.128971023262571
AT1G76820_at 4.56124836395340 4.56638076187085 5.2788553366698 5.05019079556876 5.24224556583895 5.04678581153687 3.60479622130320 3.9599908993014 3.93508897599416 4.53141126065494 4.77727962388152 4.71067425330426 5.10741347386943 5.07243010731876 4.21832337698801 5.27258170804767 5.44269305456616 4.75840596531957 4.54777118398682 0.188885319554902 0.193390982220767 0.192502955952629 0.204565195315581 0.202808342173392 0.195689762474854 0.206604762270681 0.189972115007044 0.201230234419460 0.191474161955981 0.187286850688968 0.193044152972806 0.188558238359722 0.187085070806193 0.202413021859973 0.197922118494378 0.200206365716021 0.196202355761536 0.187656822200456 1 1 + 28842909 28843326 28843123.364 28842467 28843745 + gene protein_coding_gene FALSE TRUE AT1G76820.1 similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor if-2 [Aedes aegypti] (GB:EAT38917.1) 0.781650018831499 8.26157316964426 5.15729148560864e-06 0.0775759785265252 8.95162500183625 9.29284455398402 0.781650018831499 0.0805553360209667
AT3G04720_at 10.2027045292993 10.3392560050461 10.5868487977437 10.7009661252591 10.0142140745877 9.84245518640204 3.99371082834149 3.03425910822501 8.49097107068065 7.89740866251845 6.54723918286047 7.35044626619379 5.99471828746735 7.5422920705454 6.60106619874748 6.81496101406402 6.8625630638801 7.54912686490005 7.98666405859565 0.269508396578334 0.266143685636921 0.271853915659113 0.270480736982215 0.269427620840574 0.265961901188897 0.286546840900738 0.278307422784387 0.265406464841622 0.258485220912245 0.266860837730004 0.258045150222778 0.267252807859199 0.255018036724775 0.254929618512087 0.254929618512087 0.268951529899854 0.264219405402519 0.257721221658024 3 3 - 1285705 1286474 1286097.273 1285571 1286568 - gene protein_coding_gene FALSE TRUE AT3G04720.1 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HEL) [Arabidopsis Thaliana] (GB:P43082); similar to ATHCHIB (BASIC CHITINASE), chitinase [Arabidopsis thaliana] (TAIR:AT3G12500.1); similar to hevein-like protein [Eutrema wasabi] (GB:BAC16357.1); contains InterPro domain Barwin; (InterPro:IPR001153); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002) 1.08821272479379 8.25590249069435 5.19103546471067e-06 0.0780783644247132 8.9471368288611 16.1057099397867 1.08821272479379 0.171465455796082
AT4G23900_at 3.94691855535091 3.85366477408089 4.0419231468027 4.20201240169481 3.35933406555932 2.68392818241494 5.55782705504453 5.73003950770799 3.52255240361317 4.96670562779198 3.65897144786633 3.28385490752677 3.94018557499715 3.91652338726835 3.73493660718911 3.74020959848653 3.2074263142603 3.41027364565537 4.23588546366778 0.224808343177068 0.228966350582779 0.242920578777881 0.228475057490681 0.239852150430972 0.234674437906443 0.230208768105248 0.237114025967798 0.243814440247367 0.227767727259129 0.225439708727169 0.224963333972399 0.231388256130156 0.224128139220241 0.225676406620502 0.229393719798321 0.239535151148192 0.234150481190888 0.225834527557943 4 4|0 +|/ 12425119 12426304 12425712.3 12424461 12426537 + gene protein_coding_gene FALSE TRUE AT4G23900.1 nucleoside diphosphate kinase 4 (NDK4) Identical to Nucleoside diphosphate kinase IV, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase 4) (NDK4) [Arabidopsis Thaliana] (GB:Q8LAH8;GB:Q9T0A5); similar to NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3), ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana] (TAIR:AT4G11010.1); similar to putative nucleoside diphosphate kinase III [Thlaspi caerulescens] (GB:AAY18431.1); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) -0.91523991843977 -8.2549420523934 5.19677420446165e-06 0.0781594840351031 8.94637625876893 8.09858705296395 -0.91523991843977 0.124810098881010
AT3G53250_at 2.31522953291807 2.67826610405728 1.09735771862666 1.67457089065761 1.90662151175943 1.72082821327357 1.13006252702684 1.24402827570444 1.8782832698737 1.58014407875734 3.95415380568234 4.64993880619254 4.51599607540467 4.49320947500982 3.07341894587239 4.4850936664194 3.06082699568818 3.50395457369937 2.24618817198571 0.241311711946648 0.244824161659438 0.249906650234708 0.261110451069658 0.246759174177214 0.254259726029973 0.248780352478606 0.250200422038798 0.249980368207505 0.24483213117598 0.246406900107316 0.241311711946648 0.248527527945362 0.252735333410682 0.247069382679024 0.259528906920002 0.249351504886609 0.252884948250375 0.242933055301677 3 3 + 19753951 19754250 19754094 19753946 19754275 + gene protein_coding_gene FALSE TRUE AT3G53250.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G37030.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE87816.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.911741754888248 8.25180756491094 5.21555082822916e-06 0.0784366689057383 8.94389323087012 4.65517687168716 0.911741754888248 0.123885619133860
AT4G22753_at 5.11450355328327 4.93505182334776 2.11230290211133 2.66538930109563 3.0940560506154 2.36671547430051 4.14667466064951 4.68128403423305 2.54389772896815 2.67610999214607 2.17472724782239 2.88108720798414 1.90216286595579 2.85147702311244 3.82436622150232 2.86519524402898 1.71551172883030 1.83304315501171 2.68650115668874 0.240472202355283 0.233346411289060 0.230309923486236 0.218883349621585 0.237062577065468 0.238999112435925 0.222502427944775 0.231693061494912 0.229834566974487 0.220301442216892 0.220170206684418 0.235564727362837 0.219493160875066 0.224547284809519 0.230612965967997 0.222839409959778 0.230567489387142 0.221955474013135 0.228157418755882 4 4 - 11952373 11953319 11952774.182 11952030 11953620 - gene protein_coding_gene FALSE TRUE AT4G22753.1 SMO1-3 (STEROL 4-ALPHA METHYL OXIDASE); catalytic Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. similar to SMO1-2 (STEROL C4-METHYL OXIDASE), catalytic [Arabidopsis thaliana] (TAIR:AT4G22756.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABE87434.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) -1.14465960416716 -8.24821822647963 5.23714209183395e-06 0.078756142776999 8.94104832420627 6.21022187297889 -1.14465960416716 0.185817438972865
AT3G28180_at 6.4287674170989 7.28554622688228 3.17738375173464 3.48536072408492 4.83397258977966 4.68034361117218 6.62940412795118 6.50594894200985 8.20205848585303 6.82971140478898 9.27715204462259 9.14098058735808 7.79864611878915 8.4775855074824 9.01622713847895 7.71527222822694 4.88035414661788 8.0992444301449 7.39894632285124 0.293666386308121 0.281897582938014 0.314856142220789 0.298618028823009 0.281421870787449 0.310300876460664 0.285262344271820 0.283643968596984 0.294382888176218 0.285525089039372 0.286757786344286 0.284793055516390 0.275865548977025 0.284205559266803 0.292641074620100 0.281620597800775 0.313619570821939 0.299436387880889 0.282618799415115 3 3 + 10509710 10510247 10509999.091 10507066 10510476 + gene protein_coding_gene FALSE TRUE AT3G28180.1 ATCSLC04 (Cellulose synthase-like C4); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC05 (Cellulose synthase-like C5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G31590.1); similar to putative glucosyltransferase [Cicer arietinum] (GB:CAB88664.1); similar to TPA: TPA_exp: cellulose synthase-like C3 [Oryza sativa (japonica cultivar-group)] (GB:DAA01751.1); similar to TPA: TPA_exp: cellulose synthase-like C2 [Oryza sativa (indica cultivar-group)] (GB:DAA01750.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.04718706928767 -8.24802186407377 5.23832606644113e-06 0.0787687090610753 8.940892639388 13.1421350136956 -1.04718706928767 0.161206971726422
AT4G05060_at 5.67309554479739 5.87738879301367 5.79973992389983 5.60919115882464 6.23283704091117 6.23385713955746 4.90587766363118 4.8994304850325 4.97620990730169 5.16242646242359 6.24064761839305 5.59472478976336 5.56511850162109 5.99973305596701 5.64622644187003 6.03014546843929 5.84330573637662 5.49596352813072 4.89624725823329 0.235187787236010 0.230288580565932 0.245474520134173 0.242763173624944 0.231048695846832 0.240457783314518 0.235670154127551 0.230325477613566 0.241976438121954 0.228806507803758 0.228648891313304 0.226242033027129 0.238583021009724 0.237162564369518 0.227996667228543 0.238687223235363 0.248657424809347 0.232984655833563 0.230242824508256 4 4|0 -|/ 2590500 2591705 2591224.5 2590063 2592161 - gene protein_coding_gene FALSE TRUE AT4G05060.1 vesicle-associated membrane family protein / VAMP family protein similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G21450.1); similar to Major sperm protein [Medicago truncatula] (GB:ABD32337.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.71015673038177 8.24106934891767 5.28043318455492e-06 0.0793965933629677 8.93537715674746 11.0607327279867 0.71015673038177 0.0483585365313161
AT4G09730_at 6.77533699863742 7.01894307088951 6.47470082576328 6.32332908824904 6.23139301238629 6.45942227347087 7.0687804286265 7.51388391824762 5.96053771073305 5.84715586800616 4.0823788525933 4.70788061640288 5.01073562244528 4.39283746530078 6.05155664662069 5.80086751923849 5.43403479335989 4.91974820617416 6.1695810390214 0.254341842591626 0.252671519406275 0.255952369830473 0.252752451800332 0.252204036754643 0.278463419271503 0.254946609292410 0.252355707608145 0.246499254199936 0.244925706480081 0.254613736717545 0.249051984709457 0.251925943293489 0.249565654938170 0.249933389604037 0.247482656051609 0.248852859516842 0.249935811634934 0.25801980620237 4 4|0 +|/ 6138062 6138625 6138308.571 6136246 6139708 + gene protein_coding_gene FALSE TRUE AT4G09730.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 39 (EC 3.6.1.-) (RH39) [Arabidopsis Thaliana] (GB:Q56X76;GB:Q682L4;GB:Q6NQ85;GB:Q9SZ89); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G06980.1); similar to Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila SB210] (GB:XP_001027352.1); similar to Os01g0184500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042234.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.832222355726411 -8.23006213720114 5.34784555097503e-06 0.0804048578589096 8.92663223092339 12.2544386209607 -0.832222355726411 0.0997689451778287
AT1G59990_at 5.99857985469573 5.93165082225997 5.8808080328291 5.46423207082618 5.1890672801668 4.53524197923152 6.57318716512966 6.0479079823055 5.43306176045739 6.13225892033832 4.41026039431949 4.56041865801841 4.90736712644838 4.34632241258403 5.03412812295878 5.26835422998956 5.10374817140708 4.01582828911132 6.23835804642545 0.206398654515482 0.202508905693434 0.200290671640346 0.200290671640346 0.205875977413904 0.207461479428989 0.201094320561639 0.200290671640346 0.206586149952149 0.200290671640346 0.219956938749161 0.200290671640346 0.206404057662534 0.212962969031770 0.205553121014960 0.200290671640346 0.214090051375245 0.202847290336324 0.201930989184456 1 0|1 /|- 22094392 22094709 22094537.5 22093903 22096725 - gene protein_coding_gene FALSE TRUE AT1G59990.1 DEAD/DEAH box helicase, putative (RH22) Identical to DEAD-box ATP-dependent RNA helicase 22 (EC 3.6.1.-) (RH22) [Arabidopsis Thaliana] (GB:Q944S1;GB:O24597;GB:Q9ZNU1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G33730.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE90184.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -1.04962513273503 -8.22893411141719 5.35480627781952e-06 0.0805041575807386 8.9257351567972 11.0227658991031 -1.04962513273503 0.162470661396872
AT1G12860_at 6.2902037491098 6.74692244308344 4.34970648911884 4.53416794298282 6.13956496334195 5.25640201014334 7.18815397808751 7.109769862608 6.8811504372655 6.66527191378913 6.45934026844696 7.03926940108415 6.55560234025576 6.33398113477649 6.70530348066399 6.33632776377126 5.46768438615054 6.31108347680037 6.96870425116559 0.193269205618143 0.192174622013751 0.199994381566397 0.197312301902026 0.203787002487069 0.213663436628869 0.192174622013751 0.194881368011820 0.214001726604051 0.197737389332949 0.200382407310222 0.198954466035498 0.195277873379689 0.194840431852640 0.199036735413131 0.192851957599018 0.213491083841232 0.205885401558318 0.196895827798814 1 1 + 4385605 4386366 4385985.182 4382221 4386390 + gene protein_coding_gene FALSE TRUE AT1G12860.1 basic helix-loop-helix (bHLH) family protein / F-box family protein similar to ICE1 (INDUCER OF CBF EXPRESSION 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G26744.4); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); similar to bHLH protein [Overexpression vector pLE12860OE] (GB:ABK41843.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -1.10055182970258 -8.22783959669178 5.36156956015443e-06 0.0806004751978015 8.92486457462823 12.571586212593 -1.10055182970258 0.175523747100632
AT2G29995_at 8.43271882051526 8.63785035636689 8.70474854027507 8.97199125010947 9.32733296256852 9.23205845077197 8.5239834621688 8.91750727374203 7.02052981007461 7.16044567961608 8.3199133110209 7.89824409964774 8.65418266624907 8.74418915107495 7.60705593385803 7.9318625376677 8.8099530400929 8.01651960342878 7.01374744945656 0.146589324588286 0.141089336540294 0.143820619016509 0.142423901258639 0.147413344355464 0.14529111790505 0.144424013011186 0.144743107787698 0.157839245211298 0.150861155696274 0.147983870165199 0.144916446290627 0.141089336540294 0.149055349101541 0.156238840195749 0.144906459836700 0.146378833451005 0.148961661083246 0.148981220668508 2 2 - 12804215 12806386 12804829.182 12803984 12806496 - gene protein_coding_gene FALSE TRUE AT2G29995.1 unknown protein 0.806925109615301 8.22689979148984 5.36738420642406e-06 0.0806825193909665 8.92411692489901 16.4998477341960 0.806925109615301 0.0911516609387562
AT4G22120_at 3.06464605893951 3.3883446433021 3.14473419281200 3.78266864485880 4.66706591894927 4.21028841648736 3.33636336755187 3.38476453952795 3.24448488701373 3.12396140476299 4.59663315178608 4.51666377512884 4.33741103708083 4.90360521916574 4.25005353076413 4.46253898512315 4.13992670975623 5.21599229443614 3.32132010550853 0.246092228096169 0.245583147911188 0.250623648779716 0.252258399992893 0.2356546640333 0.243668494206327 0.239295009462726 0.2356546640333 0.254938070924310 0.250002269842323 0.2356546640333 0.249980030521487 0.2356546640333 0.251799438251437 0.245143762805793 0.2356546640333 0.259188003879364 0.258098275298162 0.2356546640333 4 4|0 -|/ 11716013 11716660 11716253.5 11715788 11719779 - gene protein_coding_gene FALSE TRUE AT4G22120.1|AT4G22120.2 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G04340.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G62320.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.990295298211614 8.21752133026371 5.4257835295602e-06 0.0815549522328193 8.91664972023126 7.51374708297038 0.990295298211614 0.147119824644814
AT1G27050_at 3.28680754244971 3.48004042071469 3.26478616867241 2.64951892085602 3.15873471678679 3.20980293417101 4.87866198636278 5.17006216180974 3.53869627799674 3.75121546724354 3.01964583684672 2.96796833645215 2.68151288489251 3.151135372854 3.15045065441486 3.12240966064369 3.21693311812498 2.51368502874713 3.66832386368365 0.24584304552484 0.246050035341917 0.247205296975346 0.251610107329366 0.24584304552484 0.246962322598992 0.251477129759065 0.267107199130468 0.264013045986711 0.250842472730085 0.249078911877011 0.24584304552484 0.252556794767571 0.256276775865109 0.249423765431452 0.249666124430188 0.246122641852724 0.251627143069636 0.250811292197905 1 1 + 9393728 9394330 9393973.091 9391877 9394578 + gene protein_coding_gene FALSE TRUE AT1G27050.1 ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54); nucleic acid binding / transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-54 (Homeodomain transcription factor ATHB-54) (HD-ZIP protein ATHB-54) (ATHB-54) [Arabidopsis Thaliana] (GB:Q9LFY2); similar to ATHB-1 (Homeobox-leucine zipper protein HAT5), transcription factor [Arabidopsis thaliana] (TAIR:AT3G01470.1); similar to homeodomain leucine zipper protein HDZ2 [Phaseolus vulgaris] (GB:AAK84886.1); similar to homeodomain leucine zipper protein 16 [Oryza sativa (japonica cultivar-group)] (GB:AAS68137.1); similar to Hox16 [Oryza sativa (japonica cultivar-group)] (GB:AAS83417.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.903979967032657 -8.21519953938812 5.44034683541703e-06 0.081768412936318 8.91479932435437 6.95265826377622 -0.903979967032657 0.122785272643315
AT3G45010_at 9.62894875387948 9.73193794786867 10.7058806348453 10.8854026733959 11.3449201329914 11.0461627244175 10.3056718123889 10.2318611363757 9.26322484186877 9.68450846931056 9.9115475958212 9.4747276634911 9.77513318562265 9.86555146559646 9.38464249196076 10.1027120261682 10.2665346200599 10.0803480363850 9.257677207191 0.106259335404410 0.108806656795493 0.107249673528712 0.108227287443268 0.107814126978774 0.110496266672249 0.107892565969647 0.106377326432853 0.119530245593911 0.106069136563225 0.101828960210007 0.105279948168949 0.106235775914113 0.107758566470890 0.113030430411311 0.101828960210007 0.109218512315770 0.111593042959636 0.101828960210007 3 3|0 +|/ 16478961 16479784 16479357.8 16477275 16479974 + gene protein_coding_gene FALSE TRUE AT3G45010.1 SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G10410.1); similar to Serine carboxypeptidase [Prunus mume] (GB:BAE48666.1); similar to carboxypeptidase Y-like protein (GB:AAB04606.1); similar to putative serine carboxypeptidase precursor [Gossypium hirsutum] (GB:AAL67992.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.738416379149524 8.21463300141775 5.44390680953458e-06 0.0818164754404952 8.91434770447558 20.1148247979012 0.738416379149524 0.0641794730246462
AT3G28700_at 4.01905376809504 3.9419243183249 3.07722081083210 3.22863282546387 3.37256782518153 3.17193717641313 4.39060777130760 3.96068225475204 3.5973085200137 4.13712408137153 3.06631454222762 3.08793978011043 3.11826680879202 3.19469303093454 3.19676286685655 3.03473226894975 3.24703414992344 3.18596871139469 3.86247952171282 0.21453248173865 0.199837504492194 0.200267428911040 0.200867717806513 0.195482390247679 0.208757758593655 0.209825720802757 0.209672503237342 0.199853115439795 0.203074470027632 0.203766404453033 0.197052892278059 0.198738275021417 0.201174401493096 0.200637686045881 0.204209803835354 0.213231781035652 0.196872048098070 0.197827392371533 3 3 + 10762344 10763039 10762697.545 10760796 10763351 + gene protein_coding_gene FALSE TRUE AT3G28700.1 similar to Os01g0588800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043438.1); similar to Protein of unknown function DUF185 [Medicago truncatula] (GB:ABE89053.1); contains InterPro domain Protein of unknown function DUF185; (InterPro:IPR003788) -0.794825361557309 -8.21461555314322 5.44401648973506e-06 0.0818164754404952 8.91433379479257 7.1488790409286 -0.794825361557309 0.0872104779740001
AT2G06050_at 9.72800255907503 9.90658541349983 9.35805860739207 9.23299588219555 8.58505888359001 8.59168382396037 7.676133302633 8.05194769974185 6.00532210259991 7.41290656264486 7.99433839219962 8.59443845547719 7.78876722289548 8.052280001317 7.84716186567763 8.60774489597704 8.05407992037715 8.24437611161219 6.74945492716984 0.153069360122872 0.150841439465858 0.150691260466807 0.151330569408973 0.151313649435617 0.149565419405121 0.150845883910629 0.151002026393577 0.190529161463416 0.166051238762482 0.150038791170061 0.154345289532122 0.155173448949499 0.147115205616413 0.148586383073575 0.146237048341275 0.156316345748419 0.146237048341275 0.160776263893074 2 2 - 2359256 2359791 2359561.545 2359111 2362299 - gene protein_coding_gene FALSE TRUE AT2G06050.1|AT2G06050.2|AT2G06050.3 OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase|OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Identical to 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate- 10,11-reductase 3) (OPDA-reductase 3) (Delayed dehiscence 1) (AtOPR3) (OPR3) [Arabidopsis Thaliana] (GB:Q9FUP0;GB:Q9LLD6;GB:Q9SCY4;GB:Q9XHD2;GB:Q9ZQ01); similar to OPR2 (12-oxophytodienoate reductase 2), 12-oxophytodienoate reductase [Arabidopsis thaliana] (TAIR:AT1G76690.1); similar to 12-oxophytodienoate reductase 3 (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) (GB:Q9FEW9); similar to Chain A, Crystal Structure Of The E291k Mutant Of 12- Oxophytodienoate Reductase 3 (Opr3) From Tomato (GB:2HS6); contains InterPro domain NADH:flavin oxidoreductase/NADH oxidase; (InterPro:IPR001155) 0.763309608133599 8.20964314211566 5.47537050792817e-06 0.0822783926226367 8.91036819556883 16.3265380493426 0.763309608133599 0.075196756295513
AT1G67750_at 3.31449468257141 3.57482690800725 1.09608831818194 1.09810652709741 0.563548397309222 1.34633839144766 4.8010273208034 5.78543227330382 2.80178183082992 3.80340148430722 3.81765884068203 5.96342551930704 3.14300241277923 3.93601380353658 6.3655266901456 4.2312137952182 2.43017434507796 4.54246814308348 4.01851387963696 0.305819924640517 0.304878043877079 0.331376747004564 0.326009387746778 0.315388448856757 0.313961286692119 0.306359319493216 0.314640716727939 0.304223120276332 0.304223120276332 0.307739144485437 0.306876000525305 0.312597809095621 0.304223120276332 0.309238661502034 0.304223120276332 0.304223120276332 0.307039172066439 0.305881259444943 1 1 + 25406053 25406787 25406471.818 25405251 25407151 + gene protein_coding_gene FALSE TRUE AT1G67750.1 pectate lyase family protein Identical to Probable pectate lyase 5 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9FXD8;GB:Q8L8V9;GB:Q8W116); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G63180.1); similar to pectate lyase [Salix (GB:BAB59066.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to Pectate lyase [Prunus mume] (GB:BAE48664.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.29023592109584 -8.20515151022334 5.50386040757013e-06 0.0827010064841487 8.90678325681332 6.61994177333366 -1.29023592109584 0.222265135881299
AT3G10320_at 2.87835487502729 3.14265142659609 4.7695118573198 5.08271998030128 3.04068778779119 3.09906331140783 1.70485393919098 2.00855777649634 1.93417715326726 1.26068227318560 1.75113686222897 1.28002877138371 2.01269375767683 1.65988225516481 1.5629419955288 1.49445510395056 1.80594661247549 1.26344616485751 1.51983856985973 0.25234610951226 0.256434257312598 0.295561984148478 0.283568810415234 0.258357564867032 0.251977346488268 0.248447045990013 0.249023833571748 0.256267150666045 0.252963449733091 0.264989517684391 0.257822001825178 0.250268990118973 0.248447045990013 0.251735045953997 0.248447045990013 0.248447045990013 0.257284026237184 0.257867260965075 3 3 - 3195513 3196020 3195816 3195319 3197351 - gene protein_coding_gene FALSE TRUE AT3G10320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41640.1); similar to glycosyltransferase [Medicago truncatula] (GB:CAI30145.1); contains InterPro domain Protein of unknown function DUF563; (InterPro:IPR007657) 0.798320835757411 8.20440575433545 5.50860610905469e-06 0.0827668067885467 8.90618778653535 4.80349133885595 0.798320835757411 0.0888489875973871
AT3G20300_at 7.01630510729034 7.08121057765793 7.89712934998214 8.00162413077527 8.5441846202696 8.4200601304937 7.87275285689281 8.24411778881293 8.1145481186526 7.71004783453853 8.89846346712174 8.0493334393355 8.70220435230107 8.8514205900946 8.82716323844615 8.65575554371645 8.5451066698693 8.52760748904442 7.54305686296653 0.169717165038882 0.174663879531739 0.169905121558325 0.165400207823783 0.159068602043356 0.181131908373961 0.168167582189482 0.159681581421932 0.175452934444178 0.166477631355308 0.16453012562138 0.159196856694100 0.159088179556764 0.164998501401272 0.163523987975102 0.161456284344316 0.171171510072615 0.158165799801108 0.165799770231412 3 3 - 7079866 7080579 7080252.455 7079623 7081925 - gene protein_coding_gene FALSE TRUE AT3G20300.1 extracellular ligand-gated ion channel similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1); contains InterPro domain Neurotransmitter-gated ion-channel ligand-binding; (InterPro:IPR006202) 0.752533609285969 8.20077049256233 5.53180278820176e-06 0.0831098050899432 8.90328406788502 16.0953477973354 0.752533609285969 0.071026382102707
AT1G78510_at 7.65233030236371 7.54472951614617 7.53235852352158 7.70080668551429 7.25704578761608 7.08635785660996 8.88144454632308 8.50936608470982 8.18095392547495 8.26660348246235 7.33596279221698 7.13630019253365 7.45085555649032 7.52228518573797 6.80624754325905 8.0530210433993 7.80186898804175 7.13277223917376 8.13316774232677 0.177356914142504 0.182912949113464 0.178007198100400 0.174430075398258 0.178041911434827 0.189773953454281 0.178919581546730 0.187739246744123 0.178448219843257 0.171007307536477 0.184349929945165 0.174319761305679 0.170766947918335 0.170906183353699 0.175239973630401 0.169894219285685 0.177852983192924 0.183089815727322 0.17404627732215 1 1 - 29540337 29540792 29540595.909 29540178 29542310 - gene protein_coding_gene FALSE TRUE AT1G78510.1|AT1G78510.2 solanesyl diphosphate synthase (SPS) similar to SPS2 (Solanesyl diphosphate synthase 2), dimethylallyltranstransferase [Arabidopsis thaliana] (TAIR:AT1G17050.1); similar to solanesyl diphosphate synthase [Hevea brasiliensis] (GB:ABD92707.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.770743128275819 -8.1925309880195 5.58477019736694e-06 0.0839000026750435 8.8966962544733 15.5697995341979 -0.770743128275819 0.078835747536172
AT1G49470_at 8.6958274843389 8.88909953032563 9.4503075808955 9.69661461644691 9.81402547287706 9.46030118684754 8.86258906589036 9.01255037023212 7.76375761553203 8.23608934910355 8.77155808572614 8.42331938533731 8.74460516808944 8.57861784186423 8.58491122021738 9.02899249655159 9.1363872318637 8.79429702440581 7.76292105365328 0.191484326273969 0.191521410281778 0.201790406671702 0.200783261177669 0.203282206861091 0.198455582310626 0.188484634111827 0.192118790823898 0.224057698957523 0.205211864856436 0.195498668826199 0.194344729658918 0.193350826740598 0.188224604484135 0.200917163015673 0.193526662670573 0.190025400876608 0.189341774332948 0.218617721370948 1 1 + 18314531 18315105 18314840 18314162 18315302 + gene protein_coding_gene FALSE TRUE AT1G49470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55230.1); similar to Os08g0462900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061988.1); similar to Os09g0444900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063301.1); similar to plant viral-response family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38318.1); contains InterPro domain Protein of unknown function DUF716; (InterPro:IPR006904) 0.788604492782 8.19054915809808 5.59759177649358e-06 0.0840870236664865 8.89511037856822 17.5745437782417 0.788604492782 0.0857678368044427
AT1G13100_at 5.59286655330262 5.82713070630835 4.26913869899444 4.03089993662364 5.4545084491358 4.83564246653913 5.60637112331859 5.73690840374259 5.36442135285632 5.72363211369643 5.12198727710059 5.50936772705489 5.27544964555045 5.39357031794214 4.90377727124284 4.62835573974675 4.58310919477976 3.99645500540568 5.9869716001965 0.235367373477086 0.233659173392030 0.246401568230912 0.236222488082435 0.243683601744199 0.242846050493732 0.236108630044669 0.235496910577566 0.240906926387848 0.233663218936692 0.233494546914826 0.233060412590957 0.229631985079213 0.229631985079213 0.23327676155085 0.230804117054060 0.237314759259704 0.239915152936248 0.230686853918873 1 1 + 4464965 4465496 4465205.636 4463922 4465536 + gene protein_coding_gene FALSE TRUE AT1G13100.1 CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B29 (EC 1.14.-.-) (CYP71B29) [Arabidopsis Thaliana] (GB:Q9SAE4); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to PAD3 (PHYTOALEXIN DEFICIENT 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26830.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.904218904370821 -8.18669502414434 5.62261735128263e-06 0.0844573352336164 8.89202479940453 10.4782753145470 -0.904218904370821 0.123788226457715
AT3G01680_at 6.78678807254647 6.53558973287174 5.31185819163487 4.94956258839232 4.63583502844538 5.36379522535034 7.18637537328931 7.63602129638978 6.95608097170028 6.86427891285405 7.0405458632121 8.00138918618432 7.1778895434375 6.49778136686336 7.47167085541825 7.35678987783794 5.88376806559207 6.30721524762654 7.52781196762066 0.217796114434458 0.218713037836229 0.229025234216303 0.23690920436892 0.218018347396811 0.226278448988675 0.211376696966211 0.211376696966211 0.226351843417729 0.212604719416028 0.220470372116689 0.211376696966211 0.213370092666138 0.220896158365326 0.212260419526737 0.215017150919649 0.225715269453589 0.221841653044997 0.211376696966211 3 3 + 254592 255196 254929.455 251988 255520 + gene protein_coding_gene FALSE TRUE AT3G01680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01670.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32254.1); contains domain NUCLEOREDOXIN (PTHR13871:SF2); contains domain THIOREDOXIN (PTHR13871) -1.05992844680271 -8.18589217208923 5.62784558363756e-06 0.0845302406662361 8.89138179990115 13.0923224560299 -1.05992844680271 0.166570504543939
AT4G38850_at 7.02903765836665 7.44131220601879 7.9839735791218 8.0418941333756 9.05672284200529 8.8031035962761 8.29063142070545 7.91662595595073 8.31367370055756 8.23258263575287 9.49760858576121 9.19731616017763 9.5618820217675 9.14265507015768 9.28079752698806 9.50954607193328 9.24484524995748 8.98064525252025 8.68287239758407 0.163611803849693 0.163119399326864 0.154936218786324 0.165900295843594 0.161328257702313 0.160244644354481 0.156452317388395 0.156518628915764 0.182769911702328 0.156794613697688 0.164227550245790 0.162355007367382 0.163349597111206 0.167939376604685 0.170209802360537 0.165453265116808 0.166298549167067 0.174256977794953 0.156259220034469 4 4 + 18126251 18126472 18126352.727 18126165 18126674 + gene protein_coding_gene FALSE TRUE AT4G38850.1 SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA) mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants. similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G18080.1); similar to SAUR [Raphanus sativus] (GB:BAA25434.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.847112070938673 8.18080344975993 5.66110590773133e-06 0.0850241496282169 8.88730430978511 16.9262234591639 0.847112070938673 0.106330495014011
AT2G25250_at 6.72708057411967 6.51960989540058 6.60868773472303 6.93697316099053 7.56948496718292 7.25112810496044 6.44843049717653 6.44169249812289 6.37748908186937 6.20264851127574 7.78524248333312 7.43215105839633 7.43332245813019 7.4752699229828 7.06138517708445 7.39663308483147 7.12526605958623 7.25983314596241 6.46317655071466 0.172173438218448 0.177886623408301 0.178930379530041 0.188516221736624 0.169471222520750 0.174715463757068 0.174332451978458 0.177154171446039 0.202255598897259 0.174713243668074 0.174909422286146 0.167909092901133 0.169102722598679 0.180442049365474 0.174022457394839 0.172335936557184 0.182327019343886 0.178188363960988 0.171947088890980 2 2 + 10761056 10761449 10761275 10760914 10761792 + gene protein_coding_gene FALSE TRUE AT2G25250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32020.1) 0.790365834130552 8.17694982989676 5.68643455085386e-06 0.0853988740847233 8.88421422561012 13.6723405816221 0.790365834130552 0.0869092678789
AT4G29700_at 3.07739784306371 3.57581453024482 0.919573435058253 1.21691011351119 1.21286965147817 1.00598547761364 2.50945741253159 2.24817111225842 1.23835318893522 2.06008295224005 1.49361224894978 1.38972499287214 1.59765970314151 1.52576280454143 1.43410730947023 1.49873145598236 1.6504715010328 1.51081003242704 1.20080735991812 0.226574534196078 0.220726319037028 0.207821369427441 0.208756309010667 0.208875124697176 0.209152625275146 0.210923901251422 0.211234616186677 0.222991622185567 0.207666269927881 0.216384412817722 0.206734925354141 0.205665012664381 0.212721203891471 0.205665012664381 0.211680667627745 0.212140125439416 0.219206611252749 0.213555129106749 4 4 - 14543832 14544294 14544093.727 14543463 14545144 - gene protein_coding_gene FALSE TRUE AT4G29700.1 type I phosphodiesterase/nucleotide pyrophosphatase family protein similar to type I phosphodiesterase/nucleotide pyrophosphatase family protein [Arabidopsis thaliana] (TAIR:AT4G29690.1); similar to Type I phosphodiesterase/nucleotide pyrophosphatase [Medicago truncatula] (GB:ABE90599.1); contains InterPro domain Type I phosphodiesterase/nucleotide pyrophosphatase; (InterPro:IPR002591) -0.875506691377475 -8.16517869108599 5.76456240251843e-06 0.0865664335986192 8.87476329974229 3.47695136684495 -0.875506691377475 0.115817392806576
AT2G24190_at 3.92861820267012 4.56720654281654 5.62651296514027 5.3149560773324 5.95684584951378 5.39244563261355 5.98381256180499 6.14893113518099 3.14601243063407 5.45360692800512 5.83200207694577 6.24660763885469 6.08243226052506 6.26884873431471 5.5381102953513 6.62900080497332 6.40538209671383 6.18604528511012 4.90926387864122 0.206981566431697 0.199432404488315 0.204919250995722 0.201194059967125 0.199741287906447 0.204643045566336 0.213367642779196 0.211994925909530 0.216648447677307 0.19815075582166 0.211800695090112 0.19815075582166 0.202165986778784 0.206692395666296 0.209797604761373 0.19815075582166 0.201551852644018 0.203918137031793 0.19815075582166 2 2 - 10290839 10291395 10291080 10290714 10292060 - gene protein_coding_gene FALSE TRUE AT2G24190.1|AT2G24190.2 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 1.03057029526849 8.16492779628418 5.76624020051034e-06 0.0865858628508632 8.87456166098016 10.6906734849801 1.03057029526849 0.159611808318094
ATCG00350_at 11.4816932546659 11.8382817813432 12.6244042062177 11.9720678707663 12.5270609455942 11.7327154025669 11.9039454568989 11.5075993615037 12.0046710662560 11.2524524176459 13.4347233660028 13.5308831319843 13.7986193628791 13.3299951424915 13.0787455954749 13.3310480635309 13.0901140318334 12.8005004026396 11.0854939251068 0.0982067511644562 0.0906440935732214 0.0959133245365722 0.0936440647615724 0.0921333063513237 0.0997128943413797 0.0931678974122802 0.0980596874948262 0.104008821680373 0.0940060770421073 0.0925410336054746 0.092555086673805 0.0906440935732214 0.0927705938011873 0.0909740479179598 0.0906440935732214 0.099653484732806 0.0964507281728986 0.0940221108746025 C C - 39661 40172 39886.3 39605 41857 - gene protein_coding_gene FALSE TRUE ATCG00350.1 Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. Identical to Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A) (psaA) [Arabidopsis Thaliana] (GB:P56766;GB:Q31852); similar to PSI P700 apoprotein A1 [Nicotiana sylvestris] (GB:YP_358674.1); similar to photosystem I P700 apoprotein A1 [Coffea arabica] (GB:YP_817482.1); similar to photosystem I P700 apoprotein A1 [Eucalyptus globulus subsp. globulus] (GB:YP_636299.1); contains InterPro domain Photosystem I psaA and psaB; (InterPro:IPR001280); contains InterPro domain Photosystem I psaA; (InterPro:IPR006243) 1.19148582172583 8.15878916755829 5.80745530534758e-06 0.087198941409794 8.8696256007568 24.321904921665 1.19148582172583 0.200383038939631
AT4G23470_at 9.56514789185825 9.545091321555 9.83775626604296 9.7156753635008 9.15627676580766 8.93881734745435 6.95407197193956 6.9431707370781 8.90831998322828 7.35262288180542 8.3053205262913 8.72244522232157 7.98290730475022 8.05253898340008 8.40081618179111 8.26889993471126 7.71883253550646 7.99417101932365 7.59423138053534 0.20497676036412 0.206479563672411 0.208932572119739 0.205888271847942 0.199501811596528 0.204198736698406 0.202462126113673 0.196859121238861 0.205527312507364 0.206091385980773 0.213516582492100 0.200894483719432 0.197635822718411 0.21315301429811 0.209338616145455 0.196624726472709 0.212491697406798 0.205879030861305 0.201257389952626 4 4 + 12250838 12250986 12250900.364 12249059 12251406 + gene protein_coding_gene FALSE TRUE AT4G23470.1|AT4G23470.2|AT4G23470.3 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G63830.1); similar to Os10g0535800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065166.1); similar to Os03g0123600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048806.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN74842.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.694638835041333 8.15445626398366 5.83673789192144e-06 0.0876327827093085 8.86613853902991 16.8982340641721 0.694638835041333 0.0433374794428936
AT4G27340_at 5.66537589216242 5.62533448733193 5.43115765912015 5.23309726803493 5.38479068765537 5.09947075163229 6.07316771235346 5.85513498481894 4.21463828871668 4.90770033525236 2.96391478593226 3.51959244231739 3.5530224996824 3.49400928248282 3.76284050546367 4.51177477408816 4.49047481230291 3.42885662026926 4.95907142913772 0.254796919025691 0.247225029513639 0.244767076922776 0.244767076922776 0.245517358698675 0.256346496704543 0.250970433228864 0.245455200913570 0.244767076922776 0.244901808965455 0.244767076922776 0.251189991051459 0.257853425020246 0.260659645089612 0.258308356315161 0.244767076922776 0.250251747113768 0.256155931612008 0.246005930291201 4 4 - 13687417 13688912 13688225.25 13687202 13690475 - gene protein_coding_gene FALSE TRUE AT4G27340.1 Met-10+ like family protein similar to Met-10+ like family protein [Arabidopsis thaliana] (TAIR:AT3G56120.1); similar to putative tRNA-(N1G37) methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD68985.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Protein of unknown function Met10; (InterPro:IPR003402) -0.747933406637112 -8.14358215682844 5.91093078911456e-06 0.0887408039369769 8.85737632569811 9.75062321356516 -0.747933406637112 0.0713054451856368
AT3G23240_at 2.28232317249560 2.31825116679099 3.22729838457339 3.16094666270901 2.57725771971473 2.58303630713821 1.9755545487542 1.67523590575952 1.74035461862540 1.45212275658912 1.75271766944853 2.36769890463563 1.99599681122285 2.11346227231596 1.89618243452051 2.12878166960341 2.55902006159095 2.51844451028940 1.51716114284097 0.250382527281725 0.246808204007941 0.253207626049814 0.248588045144142 0.240148263313306 0.245075691814294 0.242460401117912 0.243494716920967 0.245285390798304 0.24603242267465 0.245336741154623 0.239852235540613 0.251261365899321 0.244075749373428 0.239350524079826 0.246666945641286 0.242027741713394 0.247588734043622 0.255438936696547 3 3 + 8295798 8296326 8296016.273 8295651 8296611 + gene protein_coding_gene FALSE TRUE AT3G23240.1 ATERF1/ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3. Identical to Ethylene-responsive transcription factor 1B (Ethylene-responsive element-binding factor 1B) (EREBP-1B) (AtERF1) (ERF1B) [Arabidopsis Thaliana] (GB:Q8LDC8;GB:Q9ZNR2); similar to ATERF15 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 15), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT2G31230.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE96718.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.71047605288433 8.1379124984159 5.95001712354245e-06 0.0893216570586192 8.8528016106232 4.34319675735291 0.71047605288433 0.0535961360855921
AT2G28900_at 11.7846223200316 11.5917834139719 10.7038120997649 10.5564504623216 11.6138779546112 11.3495388205873 10.0891196733381 9.7675731135192 9.9162342441298 9.91933229727394 11.3741431090193 11.2576118019669 10.9406160912539 11.1704024194270 11.3905977532408 10.6134434637590 10.6365553847191 11.2630277446714 9.48762951832847 0.089358885434719 0.0900674447302193 0.0934889917780687 0.0890637671039998 0.0905094010855562 0.0926914220573992 0.0900700424731551 0.0959228732917014 0.107170467259887 0.098995701216486 0.0890637671039998 0.0900504519636635 0.0909315116601634 0.0907736219490351 0.0926834846360802 0.0890637671039998 0.0918268296543431 0.0931939652325504 0.0994395861069264 2 2|0 -|/ 12421544 12422502 12422039.9 12421191 12422655 - gene protein_coding_gene FALSE TRUE AT2G28900.1 OEP16 (OUTER ENVELOPE PROTEIN 16); protein translocase Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. similar to ATOEP16-2/ATOEP16-S, protein translocase [Arabidopsis thaliana] (TAIR:AT4G16160.1); similar to core protein [Pisum sativum] (GB:CAA97910.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 0.777023119267931 8.13555183014386 5.96637355757458e-06 0.089561233472752 8.8508955924955 21.3596964360605 0.777023119267931 0.0833846373359943
AT1G77580_at 4.67755900484284 4.4561137381823 3.57536451254348 3.5974884709512 4.65995032073309 4.11604327109822 7.02666531207077 6.97791262656747 5.08134749149243 6.46331226439445 5.9468379027948 6.79095295377995 6.45713080986423 6.35262962303357 6.03587083600337 6.22468304159881 5.36832487855587 5.86798953384835 6.43101898525703 0.276975660462070 0.275623263439435 0.299147172179652 0.282049092236821 0.270529473296488 0.287911243012477 0.274240040226761 0.280555066133714 0.279046701545838 0.270774609051768 0.270529473296488 0.270529473296488 0.270529473296488 0.270529473296488 0.277850085284285 0.27321986853568 0.274324853379427 0.270529473296488 0.274395838201213 1 1 - 29149089 29149730 29149318.727 29148919 29152478 - gene protein_coding_gene FALSE TRUE AT1G77580.1|AT1G77580.2 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21810.1); similar to Os11g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065858.1); similar to coiled-coil protein [Lycopersicon esculentum] (GB:AAN03605.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21810.1); similar to Protein of unknown function DUF869, plant [Medicago truncatula] (GB:ABE86171.1); similar to Os11g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065858.1); similar to Os07g0506600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059734.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) -0.829345746432059 -8.13459511870636 5.97301615509188e-06 0.0896549724879291 8.85012292840334 10.9471098376984 -0.829345746432059 0.102049321133918
AT3G52470_at 7.91652114868184 7.99481343044879 8.69706084833962 8.7905999490566 7.66980792090657 7.48389783559583 8.1264562439435 7.84765087539704 7.0429980257072 6.7248519275187 7.90668254292982 8.4377896431335 7.41749586349509 7.9939932311972 8.4329811875521 8.25386076065154 7.83887003770057 8.0352122664015 6.56300494510029 0.187474205824987 0.181580353987174 0.187926771906234 0.189394644435012 0.186945789120836 0.183305350798227 0.185065098097659 0.185673894946114 0.204140248708736 0.210890817746233 0.182017480773313 0.181580353987174 0.187793023669933 0.189017927875686 0.181580353987174 0.181580353987174 0.183985380024308 0.187246363838142 0.195542314533838 3 3 + 19461763 19462239 19461943.273 19461627 19462960 + gene protein_coding_gene FALSE TRUE AT3G52470.1 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein similar to NHL12 (NDR1/HIN1-like 12) [Arabidopsis thaliana] (TAIR:AT2G35960.1); similar to Os12g0159600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066211.1); similar to H0913C04.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86171.1); similar to Os11g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065799.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.725820136357068 8.1321274522493 5.99018639321155e-06 0.0899067075757122 8.84812942159738 15.4741321937503 0.725820136357068 0.0617138840513167
AT2G28630_at 7.75993605330583 8.56558851798467 7.14829471581035 7.85765515948945 9.29818806829964 9.08942124090657 5.33810575353845 5.77519434408016 8.70812728397809 6.90010641768046 8.99436704076602 8.99352603926307 8.53457537748542 9.50268729959859 8.56241612989638 8.11523691228188 7.3264519257225 8.40613865192605 7.31586170942351 0.215905588337224 0.208035121920861 0.214912572985591 0.206694671196761 0.209368607518186 0.224540451293399 0.224506681753980 0.213208442924672 0.232743681496997 0.226837961677960 0.210158318295044 0.208942222237777 0.204832398548067 0.211773681234779 0.20841300333823 0.207468757585555 0.222671272621157 0.222042996953026 0.219381889092425 2 2 - 12282811 12283371 12283176.091 12282396 12284322 - gene protein_coding_gene FALSE TRUE AT2G28630.1 beta-ketoacyl-CoA synthase family protein Identical to 3-ketoacyl-CoA synthase 12 precursor (EC 2.3.1.-) (KCS-12) (Very-long- chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12) (KCS12) [Arabidopsis Thaliana] (GB:Q9SIB2;GB:Q8LFQ0); similar to beta-ketoacyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G07720.1); similar to 3-ketoacyl-CoA synthase 3 (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (GB:Q9LQP8); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE84281.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE80003.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; (InterPro:IPR013747); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392) 1.20087170699468 8.12687762373129 6.0268924925575e-06 0.090451602528303 8.84388566747904 15.7019430112493 1.20087170699468 0.203800663477872
AT4G33040_at 5.68351103506348 5.9680635646267 7.99525204778658 8.60537255941877 7.6610509935828 6.90029162224443 5.75860340323255 6.19982913241516 3.25525505767242 4.57780243028251 3.38480013170097 3.38886355826264 5.30049116412547 4.55062031242768 3.43626710714590 5.24907031430378 5.46352555441806 4.13400037738183 4.01848851032876 0.287227937860433 0.284314852615037 0.285746102967954 0.298324502820287 0.292941391496496 0.299696302233271 0.280402851290626 0.28180226540221 0.289604259320955 0.280402851290626 0.284165504638459 0.289022317018116 0.286099119386255 0.284446517201338 0.301550109374549 0.280402851290626 0.295367883639731 0.294008334553883 0.280402851290626 4 4 - 15940805 15941161 15940963.182 15940564 15941333 - gene protein_coding_gene FALSE TRUE AT4G33040.1 glutaredoxin family protein Identical to Glutaredoxin-C6 (AtGrxC6) (GRXC6) [Arabidopsis Thaliana] (GB:Q8L9S3;GB:O82644); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G11930.1); similar to Glutaredoxin [Medicago truncatula] (GB:ABE86256.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 1.15046475206662 8.12072233003872 6.07023867031694e-06 0.0910960717254464 8.83890533269438 11.0034818686623 1.15046475206662 0.191665532233651
AT3G23760_at 5.60025025059974 5.79947147794862 3.9475820644783 3.69163141694629 4.17667612208185 4.58810076406628 5.33386570954246 5.95744922000215 4.78223578250785 5.30630667132121 4.88508649058242 5.37928995800106 4.78684037914243 4.3643817023825 5.34611314425818 4.29249810552157 4.28324204718793 4.51703684122737 5.12950500395649 0.270675353537126 0.273513069483854 0.271430209158570 0.26955966995475 0.266123554129586 0.280444241684953 0.266123554129586 0.271780184245731 0.275871821644895 0.272293904203226 0.266123554129586 0.267195558849537 0.266123554129586 0.277968773673762 0.273273993272345 0.266123554129586 0.276844379659163 0.275886359845558 0.266123554129586 3 3|0 -|/ 8562997 8564580 8564194.3 8562836 8564677 - gene protein_coding_gene FALSE TRUE AT3G23760.1 similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G14100.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80211.1); contains domain Cystatin/monellin (SSF54403) -0.956316487510322 -8.12050760039172 6.07175687310701e-06 0.0911127836378438 8.8387315014817 9.78912516294144 -0.956316487510322 0.140944122279733
AT1G69640_at 9.0116994574464 9.43392045014033 9.73417362878465 9.8332140722137 9.85408566274136 9.5024713828161 9.54344093749533 9.51869551461463 8.18523933869158 7.72681240686621 8.89680346997918 8.69493334655512 9.10832812221512 8.96528472831778 8.58870509171613 8.7387008352572 9.15966505096705 9.0002272459235 6.96388304714872 0.163457213027460 0.152811584770529 0.157464504323446 0.160782536978822 0.155487930230845 0.16077135748987 0.166266162370490 0.154452460495669 0.168713451054863 0.159415812432246 0.160342386159150 0.154228905729033 0.161693079915239 0.152819238632744 0.163842546539350 0.150619883834822 0.171686902132178 0.159753765949875 0.180098267174098 1 0|1 /|- 26197657 26198099 26197854.7 26197322 26199358 - gene protein_coding_gene FALSE TRUE AT1G69640.1 acid phosphatase, putative similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G14290.1); similar to Sterol desaturase family protein [Solanum demissum] (GB:AAU93587.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088); contains InterPro domain Molybdopterin binding domain; (InterPro:IPR001453) 0.811408242756164 8.11225168868087 6.1304402811322e-06 0.0919872564183886 8.83204342297894 17.8136589302492 0.811408242756164 0.0967133316324243
AT3G53260_at 8.54877974936803 8.97035993829508 8.17078023680987 8.41230150904215 8.0750474855736 8.01401802750127 10.1047247334708 10.2778640462455 10.0594456109114 10.1114459425681 9.95328273673425 10.0048532717575 9.65080359794274 10.0086608600806 9.56454145505691 9.94621185189268 9.4986260390824 9.50623217821757 9.95747788042653 0.105223109811587 0.0994682426317063 0.108904141589521 0.10356795608286 0.104095302623951 0.109512076319494 0.103027334116924 0.102238091882485 0.104121979734398 0.103027938122553 0.102539451348292 0.098653612932144 0.106253838381919 0.102891865729854 0.104008211198085 0.098653612932144 0.114888633810265 0.101722618292556 0.105531194755348 3 3 - 19755240 19755693 19755481.182 19755029 19757758 - gene protein_coding_gene FALSE TRUE AT3G53260.1 PAL2 (phenylalanine ammonia-lyase 2); phenylalanine ammonia-lyase Encodes phenylalanine lyase. Identical to Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) (PAL2) [Arabidopsis Thaliana] (GB:P45724;GB:Q53ZM9;GB:Q8RWP4;GB:Q94KC9;GB:Q9SCN5); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to PAL1 (PHE AMMONIA LYASE 1), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT2G37040.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22053.1); similar to phenylalanine ammonia-lyase 2 [Manihot esculenta] (GB:AAK60275.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22055.1); contains InterPro domain Phenylalanine ammonia-lyase; (InterPro:IPR005922); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Phenylalanine/histidine ammonia-lyase; (InterPro:IPR001106) -0.791766807284769 -8.10802406979637 6.16072692359989e-06 0.0924355467616927 8.8286151527844 18.7264551208621 -0.791766807284769 0.0898825661177986
AT2G20500_at 3.22064894087766 3.28597778496078 4.17677839267602 4.75013982819012 4.83664777064848 4.77760553778929 3.7339633997244 3.70054636149989 3.74254011534526 3.51989164281472 4.39643024974838 3.42957053152126 4.20614416836769 4.05768014001756 3.78158075054363 4.42735004013249 4.74886781179544 4.25798686216372 3.74459459881564 0.234615017544906 0.233577103317832 0.247572400988696 0.245873448375136 0.253701889022556 0.251032042320347 0.233577103317832 0.248072540296127 0.245850863032487 0.236191752637421 0.23765527593779 0.235573761623529 0.234828059242549 0.234211051798773 0.234202004965807 0.233577103317832 0.241393907867865 0.233577103317832 0.234166860650364 2 2 - 8842388 8842729 8842601.727 8842201 8843125 - gene protein_coding_gene FALSE TRUE AT2G20500.1 unknown protein 0.822100647094013 8.10711993901115 6.16722503199482e-06 0.0925268771550183 8.82788166558949 7.97639355451823 0.822100647094013 0.100552634292454
AT3G51870_at 5.17293345412165 5.02687346239622 4.12511959215252 4.13327557372441 4.96041538840776 4.27466078768179 5.20618966953992 5.26537434087277 3.85669929096199 4.43425460789275 2.29068893547235 3.44418143672329 3.39124696780180 3.24623194517561 3.78975758271868 3.73360314974662 3.56873895320164 2.78410398103326 4.49981618857261 0.268327379650145 0.270075361695032 0.277520750417069 0.2686168011566 0.259372709536109 0.278645938235891 0.263143465359248 0.265801003564415 0.276703836261904 0.257580539679835 0.266662050029163 0.260112907408945 0.257580539679835 0.263360152624288 0.266080314690658 0.269147834641193 0.26266216130659 0.275065503663413 0.262106939150861 3 0|3 /|+ 19256718 19257510 19257049 19254927 19257913 + gene protein_coding_gene FALSE TRUE AT3G51870.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G01500.1); similar to Os01g0265200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042669.1); similar to Mitochondrial ADP/ATP carrier proteins (ISS) [Ostreococcus tauri] (GB:CAL56121.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.888497903199658 -8.10496609686277 6.18273477597783e-06 0.0927533871092194 8.82613389813127 8.54293485767543 -0.888497903199658 0.121774699624881
AT1G34750_at 7.67028613964853 7.6317291871227 8.11988988164252 8.08849598326352 7.6028454202298 7.38061003508448 6.51030345183392 6.02001462689663 5.6942640268169 4.9016984353235 5.85192370947311 6.36596167930325 5.65148635041749 6.34833937639398 5.56476839602588 5.90166452725438 6.06586210332939 5.90736653023816 4.98560137277525 0.218776730464591 0.215818197750856 0.225444689083768 0.219539381692182 0.222531210757687 0.232810176596738 0.216197541874189 0.217688952422161 0.224954344688513 0.220897686100010 0.215818197750856 0.215818197750856 0.220240352446490 0.216694465034987 0.22650801539131 0.220220720073796 0.223942213006319 0.229313752743635 0.218257173618157 1 1|0 -|/ 12736598 12737273 12736946.1 12736070 12738174 - gene protein_coding_gene FALSE TRUE AT1G34750.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G22280.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.801596975547771 8.10420061334226 6.18825712274819e-06 0.0928300450983455 8.82551258690883 12.9535349385618 0.801596975547771 0.0935526395897259
AT3G11964_at 6.16054904019676 6.04295178646054 5.84414244952903 5.92607445006752 5.28859232549405 5.31992339205843 6.18084644751527 6.01036407023341 4.8543215386767 5.584650745812 4.22807528229445 4.35092768955778 4.33018525539091 4.27382691532546 4.87141942496387 4.60731653571892 5.34860100654916 4.3635236610608 5.79189214654218 0.188665416531235 0.186454637093275 0.185858717271191 0.190011571049991 0.190440068101703 0.196213363136508 0.189862416428327 0.199065571399085 0.188734097268388 0.188308385934395 0.185858717271191 0.188742773359294 0.194216897005253 0.190373898627932 0.189458707569565 0.188730479381356 0.196132840499563 0.187955990367992 0.189675632548236 3 3 - 3793963 3794759 3794398.545 3793963 3806632 - gene protein_coding_gene FALSE TRUE AT3G11964.1 S1 RNA-binding domain-containing protein similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G41770.1); similar to PREDICTED: similar to KIAA0185 [Gallus gallus] (GB:XP_421739.2); similar to putative pre-rRNA processing protein RRP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC79783.2); similar to rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri] (GB:CAL55958.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Suppressor of forked; (InterPro:IPR008847); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.683774177066763 -8.10178151649049 6.20574394892886e-06 0.093086159233933 8.82354859542908 10.8251918027117 -0.683774177066763 0.0389230076087774
AT3G15850_at 10.6633187162907 10.8710298682002 10.2293417566232 10.2422563545120 10.3151917362583 10.3622359905150 11.7585405626882 11.8230674430895 11.4189100676262 11.8485204426368 11.4721132196758 11.5674533154326 11.3557790806450 11.2472886244327 11.4462536773082 11.3583182498750 10.8383104916814 11.1143983627364 11.7534451020541 0.109836876649013 0.106349689459747 0.111201907514815 0.116940655136915 0.111295522775990 0.115330688439820 0.11011661840862 0.120466857374076 0.130760351934686 0.110070718820869 0.108735177219137 0.106349689459747 0.106349689459747 0.117682464049941 0.109668989459263 0.108086773055710 0.118702237300829 0.114865946976529 0.106349689459747 3 3|0 +|/ 5359772 5360981 5360499.1 5359016 5361192 + gene protein_coding_gene FALSE TRUE AT3G15850.1 FAD5 (FATTY ACID DESATURASE 5); oxidoreductase Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor. Identical to Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplast precursor (EC 1.14.19.-) (Monogalactosyldiacylglycerol-specific palmitic acid desaturase) (Delta 7 desaturase) (FAD5) (ADS3) [Arabidopsis Thaliana] (GB:Q949X0;GB:Q8LCQ8;GB:Q9LVZ4); similar to ADS1 (DELTA 9 DESATURASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G06080.1); similar to desaturase delta 9 [Picea glauca] (GB:AAM12238.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804) -0.682684257236199 -8.0945007912142 6.25869611352328e-06 0.0938741830067357 8.81763290886026 22.2699300944367 -0.682684257236199 0.0385751188368877
AT3G52310_at 4.14276056067412 3.94157721305366 4.04768203366271 4.07856147614962 5.72794143090621 4.82539131831488 2.80678846991041 2.08033559938233 2.67429996715063 2.46921019295745 4.20029475461058 3.99065421424118 4.61644018582696 3.43586280079202 2.46723239070183 3.23349987521154 3.26953874097235 3.24911716055747 2.64192900354608 0.285176653374192 0.27424396309576 0.289102610415703 0.270479968827699 0.275633289006060 0.278452917277249 0.270923297868679 0.272117284680413 0.288425730137668 0.293024506832848 0.268601524106981 0.277394821052710 0.275916265879390 0.276363500545051 0.281670769608746 0.270595161858224 0.279173318594243 0.275595278291819 0.272416226941515 3 3|0 +|/ 19413088 19413793 19413407.333 19410356 19413931 + gene protein_coding_gene FALSE TRUE AT3G52310.1 ABC transporter family protein Identical to Probable white-brown complex homolog protein 28 (WBC28) [Arabidopsis Thaliana] (GB:Q9FT51); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G06530.1); similar to Putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:AAM51832.1); similar to Os03g0157400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049014.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.19485611574137 8.09257462263907 6.27278634519305e-06 0.0940792496052054 8.81606669365322 7.03286796438122 1.19485611574137 0.203569870011014
AT1G19440_at 5.65370822719566 5.87139984964879 4.58069056283063 4.54360267211521 4.51823335588104 3.88123060128394 7.67580713251669 8.06508504577455 7.02838692566054 6.73583456906662 8.27302899983256 7.4385349881042 7.28900090526355 7.83810192929538 7.46599979711324 6.63616587606112 6.56695126569594 7.4047953593038 6.60717953595734 0.267585148293912 0.263351237569469 0.274162368043377 0.281318229099218 0.274803532969781 0.284926706030940 0.263351237569469 0.263351237569469 0.287383333601620 0.264657006498192 0.269000573555860 0.263351237569469 0.263351237569469 0.268803210753899 0.268125229616402 0.263889088627759 0.273296374139981 0.263351237569469 0.267781539464257 1 1 + 6730075 6730592 6730313 6728975 6730922 + gene protein_coding_gene FALSE TRUE AT1G19440.1 very-long-chain fatty acid condensing enzyme, putative Identical to Probable 3-ketoacyl-CoA synthase 4 (EC 2.3.1.-) (KCS-4) (Very-long- chain fatty acid condensing enzyme 4) (VLCFA condensing enzyme 4) (KCS4) [Arabidopsis Thaliana] (GB:Q9LN49); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to KCS2 (3-ketoacyl-CoA synthase 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G34510.1); similar to beta-ketoacyl-CoA-synthase [Marchantia polymorpha] (GB:AAO48425.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.93097769295033 -8.09134511581633 6.28179826688962e-06 0.0942081286085437 8.81506669354645 12.6759893810618 -0.93097769295033 0.134724468130839
AT1G73530_at 7.15919791716303 7.438721472528 5.04806548621349 5.68721625253796 6.4702717872137 5.78879560972603 7.53171167496515 7.47010390801953 7.42581804590238 6.97795920384149 6.54331948415103 7.27056383344469 6.1187033375927 6.79203506230166 7.07619776557448 7.06013347960086 6.38626691130067 6.54331570774539 7.15455435580447 0.243015450536316 0.229712286314825 0.229795189579846 0.240562354664975 0.237679318603245 0.241356850911267 0.232762656564704 0.231097913858613 0.235709842069919 0.233275856649590 0.249815220420406 0.229712286314825 0.233005548094768 0.245133848300509 0.232436171058967 0.240362826386087 0.241141929508009 0.235907074916861 0.230342939425706 1 1|0 -|/ 27647503 27649013 27648590.8 27647294 27649055 - gene protein_coding_gene FALSE TRUE AT1G73530.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G54580.1); similar to RNA-binding re (GB:ABE80433.1); similar to Os08g0139000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060964.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -1.05682002335749 -8.08686522314731 6.3147528466277e-06 0.094696033688029 8.81142134309415 13.5292242549942 -1.05682002335749 0.169103047367875
AT1G53700_at 3.04439830875500 2.597678906909 2.90781191337541 2.56278445835998 2.40857330476431 2.77731605395404 2.77398685199887 2.72985178346016 3.31816536478418 3.10541913270298 5.09486110685717 5.6998875549096 5.03399295390394 5.82655941720284 4.8281024396865 5.29916340513829 4.94213080675094 4.74208096927803 3.53559753728249 0.242655756985957 0.232824940032484 0.246217794699905 0.236870945517665 0.232824940032484 0.239071342134826 0.248324700495479 0.239895781607368 0.238499903951563 0.236665022361848 0.232824940032484 0.239900681485374 0.235254713798940 0.246351813400221 0.232824940032484 0.243174105118214 0.235897561479253 0.252200623815584 0.233321445546355 1 1 + 20053119 20053602 20053393.545 20052254 20053783 + gene protein_coding_gene FALSE TRUE AT1G53700.1 WAG1; kinase The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. similar to WAG2, kinase [Arabidopsis thaliana] (TAIR:AT3G14370.1); similar to putative protein kinase [Pisum sativum] (GB:AAB71418.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.870631228312687 8.0863989894168 6.31819320747038e-06 0.0947413071460184 8.81104180895928 6.97683753601666 0.870631228312687 0.116926735570742
AT4G19120_at 10.3168573424388 10.5989886641068 9.01019532979264 8.78681013192935 9.81117186049477 9.48348106123623 8.44362197511876 8.52705658391554 8.76211028466026 8.93160879221575 11.0015912576031 11.4422965575113 10.2034684229398 10.6227016699995 11.0929971665239 10.2945006728453 8.90047311350341 10.3130947865267 8.49584277331811 0.096866588885471 0.0935894796468988 0.0963114673667528 0.0968482388527701 0.0993990851900745 0.101847948528863 0.101807497066573 0.0971906428626684 0.114966896131068 0.0992141971794158 0.0935894796468988 0.0935894796468988 0.095270952373722 0.095555561543572 0.095258324435172 0.0935894796468988 0.103685803548668 0.0956337769390123 0.105830803164443 4 4 - 10460691 10461305 10461021.545 10460306 10464185 - gene protein_coding_gene FALSE TRUE AT4G19120.1|AT4G19120.2 ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3) similar to dehydration-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G31850.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Os06g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056546.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.777659980167601 8.0854710768035 6.32504633401264e-06 0.0948377447321855 8.81028636249435 18.9791450716273 0.777659980167601 0.0854549507640744
AT3G16350_at 3.24967305850439 3.55517230655059 2.65302615316857 2.65847855626104 2.70020132290098 2.49686041907165 4.35272000198965 4.4063755312819 3.78270338728959 4.05788217413289 3.78432699711267 4.18739104240924 3.73228375394005 3.95668281708156 3.13127065963876 3.60141337034587 2.69662541325884 3.71644823342742 3.52180536225879 0.216955784238737 0.215271548011719 0.227876459751524 0.218105376220204 0.218801133740841 0.208758640592637 0.210218053322543 0.219176916980546 0.222641233542978 0.210119540572086 0.21200100911647 0.212905442270784 0.209333735513761 0.21200532166053 0.213551957662399 0.214523398248824 0.217627893571377 0.216442862188059 0.208758640592637 3 3 + 5548735 5549377 5549104.091 5547724 5549666 + gene protein_coding_gene FALSE TRUE AT3G16350.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB52 [Glycine max] (GB:ABH02825.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.725250983528182 -8.06791401189795 6.4562365814975e-06 0.096798355066392 8.79597092906111 6.95319788228054 -0.725250983528182 0.0641904417508989
AT3G57180_at 4.44156654788213 5.02642678411934 4.6334380541712 4.24097269828999 4.67950335368036 4.45392954802825 6.47944094350198 6.97932794667096 5.10723283272061 5.4583734124904 4.2743475749914 4.44902404750236 4.87608121770861 4.26523998797156 5.0344488349509 5.15798014637334 4.86800082850027 4.20127813671298 5.65861359961368 0.230615759193162 0.229525470439699 0.23106551948678 0.227680163512043 0.229138961044864 0.240087076140500 0.240268942440647 0.236116726640514 0.234104911566969 0.231697463856854 0.230157149083283 0.227336686582767 0.231083240474882 0.227474290741363 0.233426566815256 0.231574728259333 0.237362343589255 0.233067133405216 0.231047922997003 3 3|0 -|/ 21174644 21175222 21174889.7 21174524 21177009 - gene protein_coding_gene FALSE TRUE AT3G57180.1 GTP binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10620.1); similar to SDL-1 protein [Medicago truncatula] (GB:ABD33306.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917) -0.99850141338523 -8.06217958670062 6.49971870761037e-06 0.0974437828644947 8.7912863703175 10.1412624237666 -0.99850141338523 0.154480840540790
AT2G37150_at 3.9746792066372 4.44713336600259 5.1045056465723 5.01851665613462 5.28729485854801 5.56050316890282 3.71561587266164 3.84766010188772 2.88238860657731 3.55801657014739 3.53353483431171 2.84645949883345 3.61814028130624 3.44599303741480 2.89016636558751 3.88746931787154 4.1325439389788 3.94740745418556 3.05029634731183 0.233231435923163 0.231279545458649 0.234464867001413 0.237708482625163 0.250278588445795 0.241615111741565 0.233596420079580 0.253465493457526 0.237998297958026 0.251800258575383 0.247013078399628 0.236491497041452 0.242106998747811 0.237399506990613 0.238171247023815 0.231279545458649 0.242331312843445 0.232835586883013 0.239880858786543 2 2 - 15610861 15611870 15611641.6 15610663 15615533 - gene protein_coding_gene FALSE TRUE AT2G37150.1|AT2G37150.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G42940.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G34040.1); similar to protein containing C-terminal RING-finger [Lotus japonicus] (GB:CAA85321.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.810290056062253 8.0552817941556 6.55244099846648e-06 0.098227643008011 8.7856456171485 7.97012936753838 0.810290056062253 0.098304417085548
AT1G15930_at 10.6332432299836 10.9032051024217 9.89580855882254 10.0217113660459 10.2723615987058 10.2070632991904 10.6819274101856 10.8186166604414 10.5422824393833 10.5371785603714 9.83520747976002 10.1228532474350 9.74947863803713 9.65914736825882 10.3688485915349 9.40051556412734 9.44107077397137 9.58845416834254 10.5198395819412 0.104413504754122 0.10486809379941 0.105280963004216 0.106144443883691 0.106242966577900 0.113046171952360 0.106071523626094 0.109551320309289 0.117507301602073 0.103937724897294 0.105303924967351 0.105727231061350 0.110698582031708 0.108245443651016 0.103937724897294 0.110099695253645 0.115125422349170 0.115298122707841 0.103937724897294 1 1 + 5472222 5472691 5472389.364 5471394 5473008 + gene protein_coding_gene FALSE TRUE AT1G15930.1|AT1G15930.2 40S ribosomal protein S12 (RPS12A) Identical to 40S ribosomal protein S12-1 (RPS12A) [Arabidopsis Thaliana] (GB:Q9S9P1); similar to 40S ribosomal protein S12 (RPS12C) [Arabidopsis thaliana] (TAIR:AT2G32060.2); similar to Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Medicago truncatula] (GB:ABE87516.1); contains InterPro domain Ribosomal protein S12E; (InterPro:IPR000530); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.711207555016068 -8.05512235681916 6.55366507370795e-06 0.0982394394548822 8.78551516016028 20.5811407396406 -0.711207555016068 0.0578320486692205
AT3G49810_at 3.79928648477301 4.51606245495667 3.52779748457606 3.60255206182146 3.76321257140512 4.01510389451154 6.2902528786327 6.44482586897957 5.18435569410405 5.3361804141932 5.86372907306541 6.30704630843612 4.87892095402556 5.73939351168221 4.6577916434212 5.0933885949843 4.66924707535647 5.28654443414929 6.37137370329191 0.26107136904606 0.252109043595558 0.252846096868281 0.262931667736885 0.249054932853738 0.267679251091076 0.257954474700571 0.262184879098182 0.268505482958727 0.262802075813624 0.255726192320900 0.248693154048543 0.257417580216992 0.263763186821499 0.261349464533742 0.247979944025456 0.262372446648336 0.262027925507169 0.247832262927258 3 3 - 18485993 18486370 18486148.636 18485522 18487819 - gene protein_coding_gene FALSE TRUE AT3G49810.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65920.1); similar to U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94807.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.927034661614965 -8.05498854831572 6.55469257465495e-06 0.098248287001503 8.78540567092194 9.96620886408358 -0.927034661614965 0.134793708046515
AT1G15410_at 7.07074390754664 7.28375674457976 5.15156807889478 4.69070468519129 7.07178166920936 6.82662348285989 7.56274064157661 7.24421296791745 8.0866763546923 7.96492906724255 7.81911476462188 8.20630247513484 7.85057449726647 7.78315473606082 7.66803303853348 8.66187133962706 6.93034045785719 7.67964785216976 8.46320587195835 0.20634172860916 0.199982451535071 0.236583559045845 0.236704197442836 0.204535330898744 0.205061794945337 0.206825669777083 0.208717909796062 0.216527341212564 0.200853900721546 0.199283825403667 0.200674882910557 0.199576800123285 0.200275789163255 0.203537455316056 0.199283825403667 0.223501195954863 0.205765462273226 0.199283825403667 1 1 + 5299965 5300627 5300311.909 5298319 5300922 + gene protein_coding_gene FALSE TRUE AT1G15410.1 aspartate-glutamate racemase family similar to Asp/Glu racemase [Medicago truncatula] (GB:ABD28387.1); contains InterPro domain Asp/Glu racemase; (InterPro:IPR001920); contains InterPro domain Aspartate racemase; (InterPro:IPR004380) -0.85095897791921 -8.04706986251796 6.61580966737295e-06 0.0991577552945857 8.77892191671796 14.6110083521170 -0.85095897791921 0.112063010590994
AT2G25000_at 7.15321727255064 7.92675369635432 7.66564756911498 7.79057665554884 6.22962552139138 6.02586060604049 1.52163381239581 1.63204302637178 3.00072834278036 3.31255441514246 2.10343274462913 2.15922649322768 2.08477240306099 3.09159686511949 1.5878739288017 2.20151280105132 2.30919312994166 2.18615511799635 1.75667118201504 0.249843175192551 0.251761377266145 0.250831706919822 0.248252409630924 0.254357180319240 0.255535810055240 0.247206374051885 0.255904246248211 0.245207028732889 0.253648752292579 0.248630599717358 0.244002235045167 0.246783410854412 0.244002235045167 0.246780041434413 0.250197158945478 0.265317884687561 0.244082327872734 0.245837113524504 2 2 + 10637508 10638120 10637824.818 10636829 10638492 + gene protein_coding_gene FALSE TRUE AT2G25000.1 WRKY60 (WRKY DNA-binding protein 60); transcription factor Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. Identical to Probable WRKY transcription factor 60 (WRKY DNA-binding protein 60) (WRKY60) [Arabidopsis Thaliana] (GB:Q9SK33;GB:Q8VWV4); similar to WRKY18 (WRKY DNA-binding protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT4G31800.1); similar to WRKY1 [Brassica rapa subsp. chinensis] (GB:AAS13378.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.947500712469187 8.03179452893436 6.7354487337106e-06 0.100944170172121 8.7663908782233 8.19589731103327 0.947500712469187 0.141405486183387
AT1G08250_at 5.95363052598288 6.08741140882108 5.51772196495008 5.33984192408155 5.11830970803876 5.50677873684172 7.07326925211479 7.340150067036 6.34140896804688 6.55365698919215 5.65791543629285 5.94915118253973 6.33243273547442 6.13508187847994 5.85244601576725 6.60924000881945 6.69469992231106 6.3728821500962 6.68848388236942 0.165386569658872 0.167878252964401 0.175236507745717 0.167027815160868 0.175158625086566 0.174957130263961 0.174100217807957 0.189284862121653 0.180076732839132 0.171253676437555 0.172266106890746 0.170849183929469 0.172090483550933 0.174264862603743 0.179940910581500 0.169070654459069 0.170064136861639 0.170021319664513 0.165386569658872 1 1 - 2589009 2589533 2589227.909 2588854 2590298 - gene protein_coding_gene FALSE TRUE AT1G08250.1 prephenate dehydratase family protein similar to PD1 (PREPHENATE DEHYDRATASE 1), prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT2G27820.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) -0.785160505162098 -8.03153191189914 6.73752588087087e-06 0.100968562850731 8.76617516817853 12.3563047548627 -0.785160505162098 0.0901998674319635
AT2G32430_at 6.66471429901999 6.82217039284943 6.09287321680314 5.94695244084487 6.14586644326705 5.8914896428869 7.3808111510364 7.14573869044309 5.71176233308256 5.58897529727001 5.11780737332174 5.28780356605039 5.34316471583790 5.15755086735923 4.39528524421426 5.92579567070061 4.95834765915963 5.11450771177523 5.64881866926481 0.193240290097514 0.182394282412854 0.185046331745197 0.185826126629249 0.18130239467838 0.186354674185863 0.187649839034249 0.183142493537283 0.19747149869418 0.182797245049897 0.18130239467838 0.18130239467838 0.184605541965124 0.181680774736663 0.186592629063014 0.183213978438946 0.192944695420025 0.185069743956556 0.185627679838039 2 2|0 +|/ 13780392 13781082 13780681 13778373 13781579 + gene protein_coding_gene FALSE TRUE AT2G32430.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.2); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.73569122310341 -8.0298311095535 6.7509949627811e-06 0.101163659517275 8.76477792828795 11.9175195101063 -0.73569122310341 0.0705188545151091
AFFX-r2-At-Actin-3_s_at 11.7795356894821 12.0557251431659 12.5169618361029 12.6570080294090 12.3938644006836 12.4315417343034 11.7914771524424 12.2789283154061 12.129171519336 12.0312683419031 13.3446013019448 13.2153249451403 13.2143279545588 13.2380106891907 13.2949085909164 13.1171823871148 12.6937831506825 13.0519759905756 11.9710986468365 0.0578963822230493 0.0562151152980786 0.0581563344962629 0.0579328429945442 0.0540244675346363 0.0627800359775766 0.0549416641799819 0.0540244675346363 0.0588807303553171 0.054947804073153 0.0557832962714563 0.0540244675346363 0.0567137981558558 0.0559406588496746 0.0548543831128334 0.0540244675346363 0.0601314166256118 0.055077143123506 0.0549906611594427 NA NA NA NA NA FALSE FALSE 0.81292281595374 8.02819093630877 6.7640114055124e-06 0.101351946900198 8.76343012852318 24.8331855604364 0.81292281595374 0.100150932136315
AT4G20820_at 2.44099488636940 2.61069722887110 2.47933217885431 2.57646508035643 2.56480803228331 2.55981607601370 3.99928970671668 4.69300595851823 2.66743358254152 3.58712160552934 2.03959752745727 1.44804535120621 2.59335824589874 1.79118963578632 1.61126554950283 2.70383375528026 3.04795973064624 2.35965534846635 3.00530301195598 0.262016414874203 0.252907557365905 0.26085243105692 0.252907557365905 0.256362249163646 0.262199840385487 0.283808227617086 0.280267230082943 0.261327178082249 0.269377115141129 0.264356357933986 0.259676207242183 0.254621765103124 0.256011389160182 0.274785494190989 0.255571885600362 0.253636767353303 0.260157617561253 0.257304130559116 4 4 + 11151237 11151694 11151366.364 11150171 11151769 + gene protein_coding_gene FALSE TRUE AT4G20820.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44410.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44440.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90046.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951); contains InterPro domain Oxygen oxidoreductase covalent FAD-binding site; (InterPro:IPR006093) -0.889073930110169 -8.02129003873107 6.81907418844287e-06 0.102170188565440 8.75775541092194 5.63354241501763 -0.889073930110169 0.124731583657818
AT3G49780_at 8.71944612826279 9.12462921202055 9.79106820186781 9.86081812725672 9.0112436234719 8.86146218067816 7.39958015170199 7.78216240172097 6.61009659622541 6.43211975330714 6.8117218008879 5.67842801562619 6.85956785173599 7.1990810197521 4.77385309692272 7.46196438889343 8.04808381572014 7.1653764554127 5.70513740989298 0.218703240195698 0.224077771342454 0.224340712853837 0.225305850257452 0.229163592860909 0.225520690946514 0.220924278452904 0.225490964530905 0.224834796995774 0.224777334958536 0.228901895818212 0.23257557063422 0.216513989671458 0.217358008922249 0.248467286324851 0.215765207545213 0.230639653796628 0.220012237574261 0.233991077043745 3 3|0 +|/ 18476739 18477215 18476952 18476664 18477361 + gene protein_coding_gene FALSE TRUE AT3G49780.1 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR); growth factor Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype. Identical to Phytosulfokines 3 precursor (AtPSK3) [Contains: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] (PSK3) [Arabidopsis Thaliana] (GB:Q9M2Y0;GB:Q7PCC0;GB:Q8VWK1); similar to ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR), growth factor [Arabidopsis thaliana] (TAIR:AT5G65870.1); similar to phytosulfokine precursor [Avicennia marina] (GB:AAV33646.1); contains InterPro domain Phytosulfokine; (InterPro:IPR009438) 0.81266759785123 8.01311756271964 6.88490872999784e-06 0.103149702592828 8.75102677449176 15.3182399910863 0.81266759785123 0.100586606081587
AT3G01970_at 4.56730210886076 4.53230088501688 5.40190552393044 5.28798286776186 5.29594357709219 5.48308881595402 2.46965444932197 2.92215451607375 2.11530738977538 2.53614194026877 1.76561227209248 1.88528554520022 2.25959587662154 2.26215321431603 1.99851676595632 2.35413766082126 2.50047354136986 2.11102744578303 2.35605385260694 0.290043389054845 0.283365728141375 0.283963628291475 0.281017286633234 0.283290053730483 0.290517728778400 0.273112783646396 0.280856807868764 0.273854917977091 0.273112783646396 0.283722573057316 0.285442624333808 0.278927357224832 0.273112783646396 0.273112783646396 0.275555416325593 0.280136475724093 0.280812784146771 0.282797733841838 3 3|0 -|/ 326623 327129 326910.3 326404 327419 - gene protein_coding_gene FALSE TRUE AT3G01970.1 WRKY45 (WRKY DNA-binding protein 45); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 45 (WRKY DNA-binding protein 45) (AT.I.24-4) (WRKY45) [Arabidopsis Thaliana] (GB:Q9S763;GB:Q8LET6;GB:Q96308); similar to WRKY75 (WRKY DNA-binding protein 75), transcription factor [Arabidopsis thaliana] (TAIR:AT5G13080.1); similar to WRKY53 [Glycine max] (GB:ABC26915.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.775321551209676 8.01294733598308 6.88628727927271e-06 0.103163469730784 8.75088652635432 6.73400893524505 0.775321551209676 0.0872139034561731
AT2G47850_at 5.76940438566576 5.86678752820579 5.37531463726022 5.35250318078699 6.71365969013016 6.43164563094011 5.10580524249209 5.04759714234588 4.82454524953498 4.63107182100766 5.68824355318283 5.6106052080725 5.18380058551197 6.01833818132258 5.70311441565921 5.65757760084108 5.32479304577086 5.34214553584234 4.62479912737922 0.249964549400624 0.238534938504141 0.238514650496458 0.238536596455478 0.242547617690885 0.23850597769134 0.240838718994005 0.240830177926354 0.242157583926987 0.245899803313793 0.234540301839720 0.238497454552930 0.240865417455432 0.242080186041347 0.243517274149569 0.239223767620110 0.243916152841521 0.245084667941853 0.254342006732885 2 2 + 19604508 19605124 19604900.455 19602710 19605651 + gene protein_coding_gene FALSE TRUE AT2G47850.1|AT2G47850.2|AT2G47850.3 zinc finger (CCCH-type) family protein Identical to Zinc finger CCCH domain-containing protein ZFN-like 1 [Arabidopsis Thaliana] (GB:Q84W91;GB:O82252); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G06410.1); similar to Os01g0257400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042632.1); similar to Zinc finger CCCH domain-containing protein ZFN-like 3 (GB:Q5NAV3); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571)|Identical to Zinc finger CCCH domain-containing protein ZFN-like 1 [Arabidopsis Thaliana] (GB:Q84W91;GB:O82252); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to Os01g0257400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042632.1); similar to Zinc finger CCCH domain-containing protein ZFN-like 3 (GB:Q5NAV3); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.696743704951732 7.99793254428968 7.00906029039764e-06 0.104995723150157 8.73850063062375 10.8376143456031 0.696743704951732 0.0527529976009484
AT3G14200_at 5.52542005358746 5.89525843775452 5.76512875181609 6.06578975196665 6.2894273793896 6.37936552457745 5.65591359267051 6.20603097666875 5.07569094015325 5.45753119834239 6.83970247838871 6.49925075335008 6.96958503561727 6.8380402983137 6.60814505204208 6.51658234583713 6.8516320922203 6.4343883546209 5.10138129405479 0.192972488064695 0.189880846231715 0.205816986990675 0.199282886705687 0.202235294311048 0.204804624026626 0.203681119726448 0.195071585865356 0.205341602756719 0.195488150795784 0.191616455473501 0.191253480679931 0.189880846231715 0.19738661135792 0.206026526797598 0.191265580115349 0.203996825798324 0.191855084429509 0.202734047294506 3 0|3 /|- 4712914 4713959 4713230.143 4712581 4714660 - gene protein_coding_gene FALSE TRUE AT3G14200.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G72416.1); similar to Os03g0300600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049859.1); similar to heat shock-like protein [Picea glauca] (GB:AAB01572.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.89370170527455 7.99739795164593 7.01347482449127e-06 0.105054839396055 8.73805907790195 11.9258919479617 0.89370170527455 0.126920639839643
AT1G19600_at 6.86479291639759 6.98539146446875 5.99954301407831 5.94042129935443 6.98013890213439 6.63381289021085 6.85739243878209 6.80107763361172 7.08949811637006 7.12087874941027 6.20813568354246 6.45812686594372 6.36945844300575 6.59279913526495 6.54224428331433 6.35291619583113 6.02675792755565 5.9199013049186 7.57326069167121 0.214165618985092 0.216066222263241 0.212493366714462 0.201226053904707 0.204395346621508 0.210726934058529 0.192242921541162 0.205115250214025 0.214496373631987 0.199234104196236 0.206304729262183 0.191952063185338 0.197074886569767 0.200125078965859 0.21786627324766 0.190507880556598 0.209043578735770 0.210230912228041 0.201066919598635 1 1|0 +|/ 6780048 6780853 6780500.1 6778979 6781164 + gene protein_coding_gene FALSE TRUE AT1G19600.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G27600.1); similar to putative ribokinase [Triticum tur (GB:AAR28761.1); contains InterPro domain PfkB; (InterPro:IPR011611) -0.720552313049487 -7.99624154749204 7.02303438176384e-06 0.105191008970059 8.73710380113452 13.4178238194161 -0.720552313049487 0.0650170887752294
AT2G28410_at 4.25727368203193 4.41251704818768 2.76705101694226 2.94095266079570 2.52243764064527 2.62951797009435 3.84711042125717 4.21053773770705 3.97586311673707 3.40769387485647 3.31839490756163 5.08756253679182 3.14458583661537 3.89086648878473 4.7656977157333 4.02779110901182 3.19518127940867 3.9869252353747 4.48309868657105 0.221399557677220 0.218394396525104 0.238055849039841 0.248137436013496 0.237000158214977 0.232358227976000 0.221453879532670 0.222754853167240 0.225787976612082 0.223537692776757 0.216982441923799 0.223681291434737 0.230752048347097 0.230907613913290 0.221978950420096 0.220083103859597 0.226120001033158 0.224796181972268 0.234711207823608 2 2 + 12163284 12163594 12163426.818 12163207 12164011 + gene protein_coding_gene FALSE TRUE AT2G28410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60650.1) -0.74764807711892 -7.99513087242278 7.03222913850598e-06 0.105321695807404 8.73618613011712 7.38976353789857 -0.74764807711892 0.0769826617607985
AT1G12280_at 4.66377774829636 5.28141131229999 4.65479921647437 4.51733746744142 4.62489176125324 4.54607492746409 5.67116358301835 5.84307996716049 5.12046756074869 5.30714750238027 4.07060310983849 4.70466904805911 5.03192418755447 4.2209266457616 3.97068712167409 4.53216282704556 4.52393182298954 4.35980230079419 5.62983994679036 0.231050218200283 0.225566780721478 0.226065803660869 0.226148909637600 0.223728476306959 0.226257343300672 0.223728476306959 0.229607848058573 0.247097586103891 0.230300250025871 0.224647456792433 0.223728476306959 0.227576822987985 0.230805992080557 0.233273712751195 0.228209114182159 0.232993556414394 0.231521470849794 0.223751468442702 1 1 - 4174892 4175442 4175160.909 4174873 4177557 - gene protein_coding_gene FALSE TRUE AT1G12280.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance protein At1g12280 [Arabidopsis Thaliana] (GB:P60838;GB:Q9LNB5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G10780.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to RPS5 (RESISTANT TO P. SYRINGAE 5) [Arabidopsis thaliana] (TAIR:AT1G12220.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62353.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62351.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.852364464938665 -7.99451053117698 7.03737029917042e-06 0.105391657600376 8.73567351424012 9.86497869106157 -0.852364464938665 0.114286102917936
AT1G59590_at 7.94785359194222 8.1662942378668 8.53722153096591 8.6446901909482 7.91472620036677 7.68239463374538 4.68526683747278 5.09079229548932 4.54216612831475 4.82434040263332 4.34087154634078 4.60066249029505 4.76479933971643 4.72635564288824 3.88006776072997 4.86400996189453 4.81757802048206 4.34405697595601 4.72317268387143 0.233255751387318 0.227069154345146 0.224894927453803 0.226701732724008 0.227669911205167 0.231311924385197 0.226231497229794 0.235383292504806 0.227848585225235 0.225471176504677 0.225948023858101 0.23046430781953 0.226208729635654 0.230955294038694 0.23660260355997 0.224339502305179 0.232471451583175 0.227073577478371 0.228351152133633 1 1 + 21891584 21892128 21891832.636 21891417 21892457 + gene protein_coding_gene FALSE TRUE AT1G59590.1 ZCF37 ZCF37 mRNA, complete cds similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10220.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87151.1) 0.783973438664254 7.99171549139659 7.06058486872997e-06 0.105732258409231 8.73336320271664 11.9530849176302 0.783973438664254 0.091194173135341
AT2G34620_at 9.17030466887833 9.29665840998075 6.78069072491323 7.92802286104264 7.95745404043493 8.16192493471325 10.4673771844589 10.7768555649574 10.7432535787268 10.7128398504035 10.6430651141799 10.6835381279267 9.90808584338573 10.5069374073022 10.9526857204455 10.5224024803965 9.7071459157512 10.7572551945277 10.4931990390397 0.109787517852457 0.107045949704424 0.158895901973267 0.124249883085289 0.124517429681840 0.114867572753634 0.109048846965452 0.112539865344648 0.111748238959477 0.106592920088284 0.105024776907814 0.105024776907814 0.105024776907814 0.105024776907814 0.110403331510275 0.105024776907814 0.115005521883534 0.105024776907814 0.105024776907814 2 2|0 +|/ 14584600 14585258 14584837.8 14584275 14585367 + gene protein_coding_gene FALSE TRUE AT2G34620.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G03050.1); similar to mTERF-like protein [Brassica napus] (GB:ABC70867.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -1.20520024868002 -7.99063838108703 7.06955297300316e-06 0.105859486217749 8.73247260806102 19.3723628644455 -1.20520024868002 0.209812027730835
AT1G75710_at 3.77305459815851 4.17312313737153 3.15876034341740 3.14295717319652 3.88295982524958 3.93972587718811 5.56407788471935 5.70683991005537 5.90064207893934 5.37375635224895 5.89241930003871 5.84831339847767 5.59924905930229 5.54622121197501 5.68672376979436 5.27889205864691 4.39430433597799 4.92463201500239 5.53836595913973 0.212659583132467 0.210757451017501 0.231903666345878 0.218441849975388 0.214377896083148 0.227471429901818 0.211581987687353 0.218779325195089 0.223859695397741 0.215557730578637 0.212116385987400 0.214424923449689 0.218020295358390 0.210737324080601 0.215903494270554 0.213441319196201 0.230381112748452 0.225208428233986 0.210737324080601 1 1 + 28434247 28434738 28434489.727 28432367 28434910 + gene protein_coding_gene FALSE TRUE AT1G75710.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G27240.1); similar to Os04g0115500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052042.1); similar to H0814G11.16 [Oryza sativa (indica cultivar-group)] (GB:CAJ86349.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.740541740468688 -7.9897601162376 7.07687456232298e-06 0.105962042821662 8.73174631020103 9.66798693888351 -0.740541740468688 0.0742136117179184
AT3G27400_at 3.07017486181393 3.4115313351943 1.17401113640521 1.31857646718920 1.19107627130280 1.36789602838223 1.91580488417954 2.10244239463183 1.39710631702942 2.85960300435395 1.99999086819324 1.95396625205207 1.43229816546635 1.63393599403036 2.74328300229696 1.28918499301169 1.84623534691324 1.91888926582037 1.70790838910484 0.212333426145171 0.232719430689648 0.223202478544501 0.220221355120365 0.218273683342889 0.218704319744405 0.215666966901624 0.217111454499245 0.225168600944494 0.217000556410762 0.213710428841718 0.216248718524538 0.218173637939931 0.223448603375856 0.211076104081987 0.211076104081987 0.225145687328929 0.211076104081987 0.211076104081987 3 3 + 10143032 10144227 10143823.364 10141560 10144462 + gene protein_coding_gene FALSE TRUE AT3G27400.1 pectate lyase family protein similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G24780.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to pectate lyase [Vitis vinifera] (GB:AAF63756.1); similar to Pectate lyase precursor (ZePel) (GB:O24554); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.749040655329039 -7.98176428831392 7.1439083670925e-06 0.106958596072109 8.72512921301771 3.86415361712193 -0.749040655329039 0.0780708959527063
AT1G23040_at 7.8743207615953 8.56251292573667 9.69268223670164 9.97751531189446 9.73112471703861 9.48449737282757 8.62528413335129 8.91967997945479 6.51756324489848 6.9899490175252 6.46370909178156 5.73527860335201 7.87642565280725 7.692445938379 6.03228986033229 8.32776236971423 8.93495425228748 7.47615576085292 6.40140038753247 0.281832584686629 0.273796124186937 0.278334032197353 0.279407040659142 0.284900042293870 0.275893462051217 0.277149979765326 0.273796124186937 0.294645113849763 0.285102055175361 0.284131759253453 0.291174786531387 0.280010685327339 0.273796124186937 0.288758862394165 0.286440805062891 0.273796124186937 0.276056092560301 0.285299653694055 1 1 + 8165039 8165424 8165254.364 8164948 8165851 + gene protein_coding_gene FALSE TRUE AT1G23040.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G70990.1); similar to OSJNBa0006B20.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE02748.2); similar to H0315A08.9 [Oryza sativa (indica cultivar-group)] (GB:CAH67579.1); contains InterPro domain Glutelin; (InterPro:IPR000480) 0.95353946705868 7.97471833172485 7.2035462983809e-06 0.107844291633060 8.71929103166708 16.0852931337452 0.95353946705868 0.145018599841424
AT1G72920_at 4.19767009003055 4.62743936779916 6.08768467009808 6.11483203157198 5.19551752758433 4.51023198786668 3.61051973036197 3.23236418899022 4.36440989998161 4.59184903495338 4.83917408017098 4.99020170851521 4.12345746440612 5.56381943866963 4.6451485105034 5.2357081724597 4.1590859282439 4.36668088773943 4.01748174429715 0.242745350855747 0.238590801808724 0.246069969023394 0.254251004284336 0.240191346111157 0.242418225568127 0.248217793581063 0.238590801808724 0.238590801808724 0.238590801808724 0.238590801808724 0.238759158592801 0.244942656767359 0.244549894019861 0.238590801808724 0.238590801808724 0.245684043310549 0.246157624026632 0.243516918369725 1 1 + 27442030 27442501 27442408.818 27441589 27442752 + gene protein_coding_gene FALSE TRUE AT1G72920.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72940.1); similar to TMV resistance protein N (GB:Q40392); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.98794875370631 7.97355468718236 7.2134470700624e-06 0.107985302638834 8.7183262053697 9.2295273244125 0.98794875370631 0.154596666944868
AT2G06255_at 3.6683895650139 3.65558320384761 4.7562109952136 4.15065743187108 4.96772252796783 5.33346709261862 2.72841472960701 2.40830663506226 1.82801426330490 2.48929877584643 2.38621205120166 1.92854277425294 2.47069918071369 2.71379724146532 1.72093872006531 2.79458561118389 3.08786416616655 1.87004567209668 2.36202588828751 0.327248561249301 0.327305937206791 0.326938538447843 0.339290193990946 0.349290094550084 0.341931238407434 0.322886367058563 0.321730813327803 0.327296629502291 0.321730813327803 0.321730813327803 0.322931960339748 0.329298370240572 0.323727313516996 0.329462881601017 0.321946600788422 0.323183055353116 0.322582953446929 0.321730813327803 2 2 + 2459384 2459637 2459528 2457570 2459808 + gene protein_coding_gene FALSE TRUE AT2G06255.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17455.1); similar to Os11g0621500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068300.1); similar to hypothetical protein [Oryza sativa] (GB:AAD27669.1); contains InterPro domain Protein of unknown function DUF1313; (InterPro:IPR009741) 0.915990173266032 7.97095980907815 7.23557823494861e-06 0.108309370598946 8.71617402297188 6.257610015795 0.915990173266032 0.134393119872008
AT3G01810_at 6.933120612895 7.53045285522146 6.16284886540035 5.84487059959722 6.38776821041024 6.58322633715744 8.56755566972203 8.84853147380896 7.39219117667175 8.46004638341218 8.0406730955273 8.2478752496088 7.52077389432389 8.06384081084726 7.79684155190757 7.9285323217866 7.34497339876256 7.7778317525245 7.921972288772 0.217707107461609 0.201885324417767 0.214770870429759 0.230798634630546 0.210478480375577 0.217526727249063 0.206842841855003 0.200862111593428 0.221996454367050 0.212228036178616 0.213706456893115 0.201431677883540 0.207924773347214 0.211436225551134 0.201419517493011 0.204739119798981 0.214641620777934 0.201393692559949 0.206657351146285 3 3|0 +|/ 291807 292518 292179.7 288580 292762 + gene protein_coding_gene FALSE TRUE AT3G01810.1|AT3G01810.2 similar to nucleolar protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G42320.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96901.1) -0.904902753322398 -7.9681259598684 7.25983116921215e-06 0.108665152940767 8.71382259646767 14.9897490158748 -0.904902753322398 0.131232871610104
AT3G43600_at 5.93095876668771 6.05597290956657 5.04751767393487 5.4210714957061 6.59430738008985 6.71363896715649 5.33751435784542 4.6524385085888 2.76583466281382 5.24608432630993 5.77513229958589 5.92826178892476 6.12400668761361 5.92173384729689 5.28488820940229 4.73115654337854 6.39858859249857 6.37552896085442 5.21756549458104 0.256113161027886 0.250226299596861 0.250226299596861 0.250226299596861 0.250226299596861 0.255189678019119 0.256829499969993 0.257160260889405 0.267396181531658 0.256762083326314 0.254074241460544 0.250226299596861 0.257043361943321 0.25190721954239 0.260078664096525 0.257125637620915 0.267607740258463 0.259386219221917 0.265560229200888 3 3|0 -|/ 15523847 15524544 15524232.6 15523595 15528494 - gene protein_coding_gene FALSE TRUE AT3G43600.1 AAO2 (ALDEHYDE OXIDASE 2) Encodes aldehyde oxidase AAO2. Identical to Aldehyde oxidase 2 (EC 1.2.3.1) (AO-2) (AtAO-2) (AtAO3) (AAO2) [Arabidopsis Thaliana] (GB:Q7G192;GB:O49156;GB:O64418); similar to AAO3 (ABSCISIC ALDEHYDE OXIDASE 3) [Arabidopsis thaliana] (TAIR:AT2G27150.2); similar to AAO4 (ALDEHYDE OXIDASE 4), aldehyde oxidase [Arabidopsis thaliana] (TAIR:AT1G04580.1); similar to AAO1 (ALDEHYDE OXIDASE 1) [Arabidopsis thaliana] (TAIR:AT5G20960.2); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93768.1); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93767.1); similar to aldehyde oxidase [Lycopersicon esculentum] (GB:AAG22607.1); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal; (InterPro:IPR005107); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; (InterPro:IPR000674); contains InterPro domain [2Fe-2S]-binding; (InterPro:IPR002888); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; (InterPro:IPR008274); contains InterPro domain Molybdopterin dehydrogenase, FAD-binding; (InterPro:IPR002346); contains InterPro domain Ferredoxin; (InterPro:IPR001041) 0.928748349254571 7.96451900241992 7.29082741369896e-06 0.109121813900832 8.71082809764667 10.8327976461616 0.928748349254571 0.138307376926706
AT4G18820_at 5.86793561005168 5.72660096053249 4.16140216138967 4.30589040104028 5.297262073384 5.60979862353324 4.89176627923279 5.3876096426395 5.65204849788424 5.49203681054716 4.53462646974746 4.75338238870161 4.48684088872478 4.59927484752878 4.69362195910308 4.63176505955076 4.41771826379349 4.89082970077215 5.82288172979596 0.186602755436520 0.189028016830444 0.186194021746429 0.189330284832074 0.195605428454740 0.190782641924094 0.199348613302008 0.186094977234920 0.189479709248472 0.190945559404517 0.195418414380052 0.187902640961147 0.190149903851473 0.187448549635159 0.186832677139428 0.186094977234920 0.214607566605659 0.187127894668549 0.19293643243728 4 4|0 +|/ 10333125 10333721 10333489.7 10330382 10334279 + gene protein_coding_gene FALSE TRUE AT4G18820.1 ATP binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding similar to ATP binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G45720.1); similar to hypothetical protein LOC_Os11g13990 [Oryza sativa (japonica cultivar-group)] (GB:AAX95843.1); similar to Os05g0529600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056123.1); similar to Os01g0730900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044146.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain DNA polymerase III, subunits gamma and tau; (InterPro:IPR012763); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270) -0.827269020223086 -7.9611685092813 7.31974755880314e-06 0.109547341965048 8.7080449346883 10.2968647823001 -0.827269020223086 0.107292784951362
AT1G32900_at 7.91902883041605 7.76386511898353 8.75393747363804 8.83308482779718 7.7393679891823 8.29866223423186 10.9357130314257 11.3767263623170 9.69847252407706 10.5604286579615 9.1065976933222 9.86032919541922 9.80563688144386 9.46349760056032 8.87959579231217 10.6398096877986 9.87051737105668 9.18386984811568 10.6000174902245 0.133353235656137 0.124964967087465 0.121492897606248 0.132145078501469 0.125461430945922 0.128608607772962 0.124705580830644 0.118690743014874 0.124825030451887 0.120910467321371 0.128119868916215 0.119228264169357 0.120210016642680 0.123263821207016 0.125183619085328 0.121140362742437 0.121259731200015 0.127215433829406 0.121817404095679 1 1|0 -|/ 11920584 11921173 11920969.9 11920370 11923746 - gene protein_coding_gene FALSE TRUE AT1G32900.1 starch synthase, putative Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidopsis thaliana] (TAIR:AT3G01180.1); similar to Granule-bound starch synthase 1, chloroplast precursor (Granule-bound starch synthase I) (GBSS-I) (GB:Q00775); similar to granule-bound starch synthase (GB:1718316A); similar to starch (bacterial glycogen) synthase [Solanum tuberosum] (GB:CAA58220.1); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.888822334953666 -7.95462000369208 7.3766293187317e-06 0.110391257754820 8.70260087063612 18.8963172249196 -0.888822334953666 0.126890836996304
AT1G49560_at 5.21536296441288 4.83822511580797 4.59719923301124 4.78404139303427 5.29396653664487 4.80712880429758 4.24559325066346 3.80291727542985 2.68342772145569 3.17792890458732 4.69345996606534 4.67159897180969 4.09190453041724 4.33409907176376 4.89413315562104 3.60935243578246 4.28957277897324 4.34325368890837 2.77192657350238 0.230718095879958 0.235538024745076 0.233262710050360 0.226763567083627 0.226763567083627 0.233249135280989 0.234528299675877 0.227689809594673 0.242299111955115 0.230571454754536 0.232707461896626 0.231325097448139 0.228093479083443 0.233543457666932 0.229992966745692 0.228137536732757 0.229009950028134 0.230176058201035 0.229588369503652 1 1|0 +|/ 18347060 18347658 18347328.3 18346222 18348031 + gene protein_coding_gene FALSE TRUE AT1G49560.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G68670.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.91661004928548 7.95312055619928 7.38972076969328e-06 0.110579781597690 8.70135349368744 8.31989576737915 0.91661004928548 0.135172857914420
AT1G22500_at 7.76757723634993 8.22032053938398 9.30013909321907 9.56942967505664 9.73090192104857 9.76324424013415 7.65253068606357 7.98900110946952 3.44428300036805 6.10377150881559 3.48895950138734 1.46373004894989 5.13088889559212 5.21352309780034 2.13838946117982 4.87778481012206 8.0577717451294 4.23287258072502 3.5046626648778 0.237069763832242 0.238013049687169 0.240407207977297 0.237694526050043 0.237069763832242 0.242405086072016 0.242755723591913 0.240019869504899 0.237171076304389 0.247378312610538 0.238256665638596 0.254005567968876 0.243132402753409 0.240704684954217 0.253714258375962 0.243817043233639 0.247574845598814 0.247855893511223 0.242504141273049 1 1 + 7950122 7950683 7950361.727 7949465 7950889 + gene protein_coding_gene FALSE TRUE AT1G22500.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1C precursor (RING-H2 finger protein ATL15) (ATL1C) [Arabidopsis Thaliana] (GB:Q9SK92); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72200.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE77983.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.82907781623573 7.94880643131094 7.42752661357556e-06 0.111138080718931 8.69776290740196 13.0873409337396 0.82907781623573 0.108315118313266
AT1G76160_at 6.63995271520512 6.80667749435326 2.15120759134029 2.46715159212445 4.17005779499761 4.431862244055 5.83768344292987 6.8757948385417 8.50676259305138 6.90309040321788 9.67066571469117 9.77971662364556 8.0932246779725 8.63334239527903 9.92809528477024 8.23741599292003 5.04170679995116 8.49535972385572 7.17783616328329 0.243571009201494 0.240431572227759 0.245523862666389 0.247602214797528 0.229426824582064 0.23576540839453 0.241247626069239 0.239482288872562 0.241637967553949 0.242957698379626 0.235022252479266 0.234729184989899 0.229426824582064 0.24231083872033 0.230137869115447 0.230762407532183 0.244712076218367 0.237156906216585 0.234718649624073 1 1|0 -|/ 28583119 28583827 28583467.8 28582836 28586027 - gene protein_coding_gene FALSE TRUE AT1G76160.1 SKS5 (SKU5 Similar 5); copper ion binding / oxidoreductase similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS7 (SKU5 Similar 7), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21860.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -1.13962306767166 -7.94207796563846 7.48690669936122e-06 0.112019098035843 8.69215784619352 12.9296337749367 -1.13962306767166 0.195316902836223
AT3G24190_at 9.0207441614376 8.97966645737269 9.20297796616386 9.13710473180678 8.76787428744714 8.7881804593876 10.5902000787663 10.5233632250128 9.86840249890538 10.3803993600939 9.7581429028545 9.46610981923308 9.63064508953772 9.70860836387154 9.33686887046498 9.9855572872948 9.7586567238683 9.61014576889717 10.2047122955065 0.107531813819784 0.107393092865645 0.108788042556945 0.108908950417992 0.114018374026422 0.117780950784925 0.106416383545909 0.109807005015950 0.110923299164520 0.101969165845300 0.108064565923937 0.107588557698318 0.109403904735581 0.109542179196119 0.109163205789873 0.106133483277046 0.105849172659914 0.111357381518540 0.102834191241206 3 3 + 8746955 8747629 8747342.091 8743262 8747908 + gene protein_coding_gene FALSE TRUE AT3G24190.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to ABC1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22014.1); similar to Predicted unusual protein kinase (ISS) [Ostreococcus tauri] (GB:CAL54263.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.649394325514267 -7.94181982115948 7.48919504477132e-06 0.112045847064824 8.69194267955715 19.2802705399684 -0.649394325514267 0.0180725472176145
AT3G47780_at 5.08488759432776 5.31306497119437 6.30647824504019 6.46894744070214 3.97635673088836 4.08952166812175 2.39907464804855 2.94789759454976 2.55325294118542 2.52171090405522 2.84939906272305 3.07186959518725 3.5404415370356 2.70793339627129 3.32591981622496 3.16072261080327 2.91485986608896 2.97555913630043 2.98297124748477 0.269480195479611 0.270141852405994 0.280043223432489 0.26997451385344 0.265024037147163 0.260572728471221 0.265868003569925 0.260111291647709 0.254091886665369 0.252955660428458 0.261568870140688 0.252955660428458 0.258057538955355 0.256387233521517 0.262714570477170 0.254883077805907 0.25979269938785 0.262799036100551 0.269313838338722 3 3 + 17639293 17639926 17639628.909 17635464 17639998 + gene protein_coding_gene FALSE TRUE AT3G47780.1 ATATH6 (ABC2 homolog 6); ATPase, coupled to transmembrane movement of substances member of ATH subfamily Identical to Probable ABC2 homolog 6 (ATH6) [Arabidopsis Thaliana] (GB:Q9STT5); similar to ATATH2 (ABC2 homolog 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G47740.1); similar to ATATH3 (ABC2 homolog 3), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G47750.1); similar to ATATH4 (ABC2 homolog 4), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G47760.1); similar to ABC2 homolog 2 (GB:Q1PEH6); similar to putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99368.1); similar to ABC transporter, putative [Medicago truncatula] (GB:ABE91253.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.828227291247774 7.93775352517908 7.52534073074508e-06 0.112579097331946 8.68855217402789 7.45043685751968 0.828227291247774 0.108414856803741
AT4G14720_at 4.9672757680688 5.00721614144741 5.25361174665346 5.08170842794331 5.60091683734569 5.85766506084756 3.84146591417994 4.09121998983350 3.63817706959846 4.0752619473157 4.29331272478709 4.55465963175246 4.42877910571151 4.2788443216952 4.45179912494137 4.92556179061893 4.76185688208178 4.26248788797183 4.34103419700084 0.212845904721793 0.221094809688494 0.215280246242205 0.217896774205725 0.228324185327691 0.229302242460974 0.212845904721793 0.218184004962941 0.222232936709841 0.216496230956668 0.222858330311811 0.220780848103231 0.215533972711701 0.217677831203443 0.228240795899519 0.214607094381357 0.213767563868366 0.212845904721793 0.225768029141187 4 4|0 -|/ 8432545 8433486 8432854.556 8431968 8435070 - gene protein_coding_gene FALSE TRUE AT4G14720.1 PPD2 (PEAPOD 2) PPD2 (and its paralog, PPD1) encode plant-specific putative DNA-binding proteins. Deletion of the PPD locus increases leaf lamina size and results in dome-shaped rather than flat leaves. Siliques are also altered in shape because of extra lamina growth. similar to PPD1 (PEAPOD 1) [Arabidopsis thaliana] (TAIR:AT4G14713.1); similar to ZIM motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96481.1); similar to Os03g0402800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050322.1); contains InterPro domain ZIM; (InterPro:IPR010399) 0.724093005269223 7.93771750773268 7.52566173203224e-06 0.112579097331946 8.68852213237155 9.2190451966233 0.724093005269223 0.0691012133075384
AT4G26080_at 9.67634941586058 9.96687364780173 10.5526219365705 10.5088129407744 10.6809961828848 10.5221640152611 10.0333285154908 10.0180771266277 9.1505889984468 9.36205127937316 9.8716880726922 9.79890634759069 10.2029854465509 9.88536033373092 9.62016946096562 10.0812775588692 10.7427642635220 10.1470581565166 9.34360702395716 0.108929543945460 0.101299437346829 0.103568700282868 0.104453061849654 0.102998105304896 0.106634724276768 0.103895008457864 0.104416007334606 0.114778236818626 0.111505996820741 0.101343114418808 0.102843010478812 0.101960163695806 0.106616020847430 0.100647521413824 0.101452690478473 0.112574034372377 0.104429035537490 0.107627101994862 4 4 - 13220267 13221025 13220631.909 13219970 13222293 - gene protein_coding_gene FALSE TRUE AT4G26080.1 ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein phosphatase type 2C Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. Identical to Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 1) (ABI1) [Arabidopsis Thaliana] (GB:P49597;GB:Q43717;GB:Q94C87); similar to ABI2 (ABA INSENSITIVE 2), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT5G57050.1); similar to Os05g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056498.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:AAT39223.1); similar to Os01g0583100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043415.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.700426015111609 7.93242235209914 7.57301513896886e-06 0.113277160448696 8.68410359256362 19.9094989588159 0.700426015111609 0.0578592474874277
AT1G64780_at 3.90920088858116 4.08415195754578 3.76290632196252 4.25967230366706 2.8751633981389 3.37355733446618 8.36424786715664 9.73744255754647 4.79736551223846 6.22366197649778 4.53631770630608 5.53088832645963 6.21855044365905 5.40260285182082 4.69931000072797 7.82989791469571 6.91990619266757 5.12494800327572 6.11845837318453 0.223707875237095 0.223707875237095 0.236557733833726 0.228837387156863 0.229807279794538 0.227138816740094 0.240236115203377 0.236622867095434 0.233720987380735 0.228168251815148 0.225144221758928 0.223707875237095 0.224239314571172 0.228085377133227 0.223736706620210 0.235060224341123 0.233821292601943 0.229918579238899 0.229892832887967 1 1 - 24064712 24065216 24065012.909 24064433 24066293 - gene protein_coding_gene FALSE TRUE AT1G64780.1 ATAMT1;2 (AMMONIUM TRANSPORTER 1;2); ammonium transporter encodes an ammonium transporter gene Identical to Ammonium transporter 1 member 2 (AtAMT1;2) (AMT1.2) [Arabidopsis Thaliana] (GB:Q9ZPJ8;GB:Q9SQH8); similar to ATAMT1,3 (ammonium transporter 1,3), ammonium transporter [Arabidopsis thaliana] (TAIR:AT3G24300.1); similar to AMT1,1 (AMMONIUM TRANSPORT 1), ammonium transporter [Arabidopsis thaliana] (TAIR:AT4G13510.1); similar to ammonium transporter, putative [Arabidopsis thaliana] (TAIR:AT4G28700.1); similar to Ammonium transporter 1 member 2 (LeAMT1;2) (GB:O04161); similar to Ammonium transporter [Lotus japonicus] (GB:AAM95453.1); similar to ammonium transporter [Populus tremula x Populus tremuloides] (GB:CAG26715.1); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905) -1.44314762608543 -7.93058167378465 7.58955105155364e-06 0.113516915078088 8.68256674425991 10.7937751455957 -1.44314762608543 0.268733583034541
AT1G26665_at 6.41825535990116 6.94977058269155 5.67469282053863 6.0868877197237 7.16952939123197 7.2482831020767 3.07771718767583 3.73413718236038 3.56303871239992 3.33868908880289 4.51389557945723 3.72639378588844 3.82619628269876 4.5367135346859 3.64415492609891 3.58974425783805 4.05163111685037 3.80958363100518 3.40076686325098 0.267609045681303 0.267088109286678 0.262883908792532 0.263654621351544 0.273983880466511 0.266161581212767 0.266144711075809 0.262281407739934 0.268160701443092 0.266223788994213 0.262281407739934 0.262281407739934 0.266281559621195 0.263855071056606 0.262281407739934 0.262281407739934 0.262281407739934 0.26519289456701 0.262281407739934 1 1|0 +|/ 9214530 9215347 9214856 9214161 9215539 + gene protein_coding_gene FALSE TRUE AT1G26665.1|AT1G26665.2 similar to RNA polymerase II mediator complex protein-related [Arabidopsis thaliana] (TAIR:AT5G41910.1); similar to At1g26660/T24P13_4 [Medicago truncatula] (GB:ABE78676.1); similar to Os09g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063737.1) 1.01400121569981 7.92799916493938 7.61281690149611e-06 0.113857289578776 8.68040973607111 9.4931361820083 1.01400121569981 0.163213799814082
AT4G15490_at 8.91213027016594 8.89880558130452 9.12845603456348 9.2762740751214 9.32462410192364 9.00097225842308 8.95680127101156 9.17319599150865 5.95869982578764 8.5188796556628 8.15031590889189 7.7657660553944 8.8701906148991 8.88048747057302 6.81135721621733 9.38834279424476 9.4803926202959 8.78126207400991 7.289589042289 0.130529348508238 0.132391453182622 0.130945042181685 0.135094502843704 0.132265764499154 0.135871507041895 0.142154194565273 0.134178089183536 0.170378571725239 0.132591882918601 0.142327421223739 0.140621611436982 0.136483413591059 0.143427017522596 0.14438015169207 0.132556818062332 0.135921541380037 0.131672325054531 0.148615381616960 4 4 - 8853018 8853434 8853218.364 8852696 8854543 - gene protein_coding_gene FALSE TRUE AT4G15490.1 UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. similar to UGT84A2, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT3G21560.1); similar to UGT84A4, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G15500.1); similar to UGT84A1, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15480.1); similar to hydroxycinnamate glucosyltransferase [Brassica napus] (GB:CAJ77650.1); similar to UDP-glucose:sinapate glucosyltransferase [Brassica napus] (GB:AAF98390.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.728819921039769 7.9157235205883 7.72446427030124e-06 0.115519363162355 8.67014420844772 16.9697760407839 0.728819921039769 0.0721048224238493
AT1G12400_at 5.80634799962202 6.34660954484952 6.83413138869911 7.10243052201758 6.76421380569316 6.55597890190601 6.22243973625828 5.85272648052823 4.86045930050369 4.75602707172077 5.82403468162917 5.71953521163934 5.91286401859766 6.13967290565107 5.40348224362999 6.1063198227268 6.28018097294228 5.4161608644667 4.88682040156725 0.226645519452089 0.218654438521138 0.216328573217800 0.225839450755843 0.225250961884487 0.216721689982924 0.220933188142937 0.226400165893236 0.252464482175536 0.224902764231546 0.222256086590419 0.217194969970413 0.219491052029364 0.219602827629657 0.218009226812049 0.220972325156753 0.226188709699575 0.223593317299772 0.222077270741055 1 0|1 /|+ 4222464 4222574 4222513 4221861 4222835 + gene protein_coding_gene FALSE TRUE AT1G12400.1 similar to Os07g0573600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060068.1); similar to novel protein similar to vertebrate TFIIH basal transcription factor complex TTDA subunit (C6orf175) [Danio rerio] (GB:CAI20614.1); similar to Os05g0198700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054876.1); contains InterPro domain REX1 DNA Repair; (InterPro:IPR009400) 0.886501731580462 7.91199679760406 7.7587071308876e-06 0.116023706435293 8.66702365574766 11.7779682631589 0.886501731580462 0.127629032250427
AT1G11960_at 4.17220232643473 4.41261675166950 4.8566304580696 4.94428263973585 5.5064914601785 4.89476620390137 4.22076200726685 4.17712585850901 3.76731934049154 3.17824164315690 4.56794565298558 4.57349671307759 4.04394777948199 4.41577510876721 4.31429697212244 4.89320939204928 3.56374764721913 4.50589329885865 3.47467056132046 0.242343355915994 0.230083882802114 0.236389407068533 0.236000882593964 0.227463013572895 0.227463013572895 0.237294008765509 0.23139858961977 0.236014959505647 0.231276632218828 0.230532081845932 0.230989593701131 0.231764758632781 0.229834856755928 0.233961075584773 0.227463013572895 0.237945326053994 0.23292197710978 0.248592027578199 1 1|0 -|/ 4039915 4040687 4040252.667 4039613 4043878 - gene protein_coding_gene FALSE TRUE AT1G11960.1 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G62320.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); similar to hv711N16.16 [Hordeum vulgare] (GB:AAM74515.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.845622255040957 7.91038849130822 7.77353549711027e-06 0.11623767628829 8.66567636179832 8.56470950600061 0.845622255040957 0.114999206176629
AT4G36760_at 8.38197711952448 8.42040349765274 8.7857645765606 8.82179503612841 9.03037589074264 8.65190160705505 7.60902919641654 7.486580525052 7.56339139166448 7.22959132335304 8.01130049148804 7.24711613495326 8.02391936251093 7.81606238972942 7.34738936506927 7.67473741578577 7.82532423564374 7.92072778821914 6.62791082140158 0.1740485056362 0.172583353869537 0.180775199970661 0.176477807334931 0.173267431360082 0.179559003284480 0.170225959454912 0.173508214189828 0.174289973230874 0.163347506043923 0.165912853421621 0.168066245887037 0.161956636185199 0.165754975612741 0.174396322802602 0.161470833903849 0.188709090550557 0.165380347056701 0.18615259564189 4 0|4 /|+ 17329216 17329959 17329501.625 17326622 17330214 + gene protein_coding_gene FALSE TRUE AT4G36760.1|AT4G36760.2 ATAPP1 (aminopeptidase P1) Arabidopsis aminopeptidase P1 similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94110.1); similar to Xaa-Pro aminopeptidase 1 [Solanum lycopersicum] (GB:CAC59823.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24B, X-Pro dipeptidase; (InterPro:IPR001131)|similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94110.1); similar to Xaa-Pro aminopeptidase 1 [Solanum lycopersicum] (GB:CAC59823.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994) 0.720492997706073 7.89007102303892 7.96351267177314e-06 0.119070441468352 8.6486257133961 15.8352884278405 0.720492997706073 0.0694402709556577
AT4G12830_at 7.51190392909022 7.83765351812058 6.95476837326920 7.0608503696481 7.75235828256165 7.0443892862949 9.71857254286736 9.75645527453228 7.98238571772998 8.70547351920935 7.972995167819 8.15128998604123 8.2594006968586 8.2378425087823 7.83112222897873 8.3323213672906 7.73470776968828 7.58189180470136 8.31790359954859 0.198309402271819 0.198712092971592 0.203647302548017 0.194398144999898 0.195962574411485 0.214904705997918 0.210179314746216 0.197936567869236 0.211619573858046 0.194991763036402 0.201990082913023 0.193556603219685 0.201109923521173 0.207741781858704 0.204445930561365 0.201871781772647 0.196680464155602 0.202096415446491 0.194700470439615 4 0|4 /|+ 7532431 7533130 7532770.25 7531138 7533584 + gene protein_coding_gene FALSE TRUE AT4G12830.1 hydrolase, alpha/beta fold family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT1G52510.2); similar to COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [Nostoc punctiforme PCC 73102] (GB:ZP_00112083.1); similar to Os01g0919700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045213.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.912806287884218 -7.88780413569206 7.98501732181326e-06 0.11938399397843 8.64671980558698 16.1285943070977 -0.912806287884218 0.136265728603228
AT3G13860_at 6.93926444477064 7.23163061614473 6.66307012198642 6.9398955780761 6.03793621341855 6.38862113954159 7.19707780561505 7.63805899345718 6.94321156258704 6.37337155485203 5.1495623706616 5.58923222782162 5.35809700295861 5.4395736826814 6.36275459777561 5.83933105745446 6.2868943672088 5.64510602096344 6.72150426492566 0.181365088080649 0.185217504028373 0.182756165034500 0.184002462271313 0.177532419924743 0.180155700393876 0.188767512991901 0.182993246894744 0.177800584753287 0.181534413762073 0.182292241137158 0.181307880078745 0.18123946427847 0.179779877345990 0.182279073889526 0.177532419924743 0.183156228857192 0.182560061788612 0.178143620858987 3 3|0 -|/ 4561717 4562640 4562178.429 4561524 4565286 - gene protein_coding_gene FALSE TRUE AT3G13860.1 chaperonin, putative Identical to Chaperonin CPN60-like 2, mitochondrial precursor (HSP60-like 2) [Arabidopsis Thaliana] (GB:Q93ZM7;GB:Q9LRW0); similar to HSP60 (Heat shock protein 60), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G23990.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT2G33210.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE79780.1); similar to Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54159.2); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.857335373294393 -7.87721578668774 8.08629496171833e-06 0.120890109677689 8.63780819762535 13.0735350524907 -0.857335373294393 0.119840153113704
AT2G05940_at 8.75946174514208 8.77197937144724 9.45149035465448 9.49680763542243 9.0571285368238 8.94582557801025 8.41055468456357 8.31290340175382 7.64426474900906 7.25010804116511 7.94576550700427 7.90704089173509 7.9057888236118 8.24290013449655 7.89561676031138 8.09327868054094 8.09645934118878 7.8075705071138 7.18258883186105 0.135486322406513 0.132711249050863 0.133970819246641 0.129737996786872 0.129229796650415 0.130314293020949 0.132376732929676 0.134691114813635 0.145781670426475 0.140943618760173 0.138391354675744 0.129642535225759 0.131990743548293 0.132567144538459 0.138623999662480 0.131369291521162 0.130992145144329 0.138440944851955 0.141032583640244 2 2 - 2287586 2287966 2287813.273 2287235 2289304 - gene protein_coding_gene FALSE TRUE AT2G05940.1 protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT5G35580.1); similar to Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum] (GB:AAP03880.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.650951799453156 7.87555989325924 8.10225836480997e-06 0.121120660295544 8.63641313307636 16.5736638075249 0.650951799453156 0.0268845132709310
AT1G14685_at 7.65921678733261 7.84969330442023 6.95613021975654 7.08183514370585 7.96007799714125 7.94632945582364 5.90190963330112 6.29469863584549 7.02286969185493 6.05101865505505 7.38082210057701 7.75477539844506 7.1275991296031 7.27285010750734 7.48875617016052 6.85892492370392 7.02394941231713 7.04980223254412 5.89654299744521 0.213586238393616 0.211193838826971 0.222476183899454 0.222879697120015 0.211611546718494 0.217233889766966 0.214717888991599 0.213229062704013 0.206332345261028 0.216623242252597 0.211657091589448 0.213466139076370 0.207241403853364 0.212964335765496 0.207108221160282 0.210228162106167 0.207613429963555 0.212810581406628 0.211722839629712 1 1 + 5043327 5043893 5043610.727 5042318 5044289 + gene protein_coding_gene FALSE TRUE AT1G14685.1|AT1G14685.2|AT1G14685.3 BPC2 (BASIC PENTACYSTEINE 2) Arabidopsis GBP Basic Penta Cysteine 1 similar to ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1) [Arabidopsis thaliana] (TAIR:AT2G01930.2); similar to GAGA-binding transcriptional activator [Cardamine pratensis] (GB:ABG57060.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.740460716727085 7.87542042388099 8.10360444899358e-06 0.121132679303556 8.63629561506302 13.990317421737 0.740460716727085 0.0786504897955983
AT1G11870_at 6.05597805574283 5.9038252406114 5.51704348533856 5.1589410072245 5.25786048814669 5.28961639661237 7.04297315534876 6.98517565040065 6.01775090552131 6.06088671067303 5.61263170787954 5.76806887959494 5.59797981795728 5.58800043124594 6.14252836730181 5.89530895383166 6.2577032647806 5.60533476238759 6.06978465572508 0.231733580332082 0.233419727801761 0.228568289913888 0.243369712698604 0.224481239177066 0.249205857897366 0.222458519088005 0.220481215752618 0.232701251857134 0.224120309912068 0.235260939558135 0.228901069681198 0.227561231490012 0.237060334463277 0.234993879389756 0.22402579538542 0.220481215752618 0.220481215752618 0.220481215752618 1 1|0 +|/ 4005747 4006501 4006117.8 4003845 4006738 + gene protein_coding_gene FALSE TRUE AT1G11870.1|AT1G11870.2|AT1G11870.3 AtSRS (OVULE ABORTION 7); serine-tRNA ligase Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. similar to seryl-tRNA synthetase / serine--tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G27470.1); similar to seryl-tRNA synthetase [Zea mays] (GB:CAA73496.1); similar to Os11g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068265.1); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Seryl-tRNA synthetase, class IIa; (InterPro:IPR002317) -0.716076124356384 -7.86914837552958 8.16438871081483e-06 0.122033118060549 8.63100796969206 11.8303859918093 -0.716076124356384 0.0682934426141684
AT4G17810_at 5.48312043322417 6.14487374655714 3.65024486834498 4.32417578334349 5.17171309547463 5.25461296370046 7.10626563313651 7.13228878428905 6.62106080753723 6.41903373309513 6.65116329120785 6.87617508366314 6.63810136855751 6.87364957581418 6.40126536688338 5.83373253176856 5.14799341254243 6.39556702402507 6.47279332951979 0.281942409066489 0.272603908941327 0.297823614237297 0.302132397662239 0.274909285503805 0.291998791918575 0.282497219240156 0.271681706736622 0.269688165113714 0.268739911739848 0.273048902009259 0.269304780845262 0.271136354863926 0.268739911739848 0.287378989560596 0.273593066604955 0.283551378610116 0.276656068209794 0.279052606538213 4 4 + 9907026 9907509 9907191.182 9906861 9907670 + gene protein_coding_gene FALSE TRUE AT4G17810.1 nucleic acid binding / transcription factor/ zinc ion binding similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT2G37740.1); similar to zinc finger (C2H2 type) containing protein [Brassica oleracea] (GB:ABD65171.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -1.00927023574772 -7.8642029323833 8.21266284203405e-06 0.122746458837041 8.62683489795587 11.9616628702714 -1.00927023574772 0.164142135927324
AT2G30770_at 4.93812185645885 5.39304785176785 8.56697518231381 8.4291527349822 4.44940306644074 4.80684966475253 3.39180219076676 2.62947973890773 3.68945038289687 4.03446201179627 3.61726123025550 3.45515632469542 3.31006788049597 3.04699810432919 2.96362025684361 3.20335589225689 3.37733777938451 3.04213008522652 3.34421824842493 0.262955509950257 0.257274723782066 0.28701245004938 0.278640773998568 0.260135448381161 0.250898492368447 0.250953431590377 0.253193159530474 0.269950957899981 0.246136761405963 0.242345772808798 0.239767675463922 0.241292746094585 0.242560503718518 0.251771190044657 0.254542781111047 0.244622782984387 0.256461099534569 0.243377480157464 2 2|0 -|/ 13117025 13117854 13117341.5 13116871 13119088 - gene protein_coding_gene FALSE TRUE AT2G30770.1 CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A13 (EC 1.14.-.-) (CYP71A13) [Arabidopsis Thaliana] (GB:O49342); similar to CYP71A18 (cytochrome P450, family 71, subfamily A, polypeptide 18), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G11610.1); similar to CYP71A14 (cytochrome P450, family 71, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G24960.1); similar to CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G30750.1); similar to Cytochrome P450 71A27 (GB:O65438); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.01879815789681 7.8466553086724 8.3864483266413e-06 0.125335470241654 8.61200061530467 8.79628794841146 1.01879815789681 0.167323034733001
AT4G17610_at 3.55331615121996 3.91713723962883 2.72676922431272 2.68726279497848 2.63293766732876 2.35940572760998 3.09223615983754 3.06984462662832 3.25780977117848 3.34902973254708 2.48947533141137 3.02516477794724 2.23784751781481 2.32665893887455 2.61452868225742 2.77465404960376 2.60945416748572 2.82185282709067 3.24097593658621 0.187911078433837 0.183886120497893 0.175388058926797 0.181578732185796 0.176473243605088 0.184420783458096 0.176328793381430 0.195779211672355 0.174904866975097 0.177991980658018 0.174904866975097 0.182999680626522 0.184933987381071 0.179549662404350 0.183164403057248 0.180080523685390 0.179195845116405 0.179668760508583 0.177743161033201 4 4|0 -|/ 9805665 9806610 9806102.3 9805526 9814923 - gene protein_coding_gene FALSE TRUE AT4G17610.1 tRNA/rRNA methyltransferase (SpoU) family protein similar to RNA methyltransferase, TrmH family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93471.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) -0.73834515049054 -7.83978717792277 8.45554321730918e-06 0.126359637839468 8.60618290286847 5.95239354060871 -0.73834515049054 0.0791614239337269
AT3G57450_at 7.23136343406787 7.35317539122849 7.97735482120248 8.31410385867968 6.7529654301093 6.35163052659026 6.1045186663843 6.33520542545259 6.07806783468214 5.28940973531439 6.92850019959894 7.35219971958865 5.65191332520542 7.14325289507401 6.96365484382436 6.31213887178817 6.12649550998009 6.00721832032676 5.3109911143763 0.261914017132249 0.256779856202168 0.267017407699706 0.256779856202168 0.259683499614736 0.27259298302387 0.263009016837671 0.256779856202168 0.266126304507052 0.262538562106463 0.256779856202168 0.259584058744263 0.265257731633081 0.261642989681853 0.256779856202168 0.257294577905945 0.283088228228928 0.266231731614308 0.258542129980784 3 3 + 21273015 21273269 21273138.455 21272911 21273599 + gene protein_coding_gene FALSE TRUE AT3G57450.1 similar to Hypothetical protein [Oryza sativa] (GB:AAM08779.1); similar to Os07g0185900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059068.1) 0.797065039538904 7.83965237879293 8.45690544778753e-06 0.126371538106289 8.60606865475993 13.1126203302798 0.797065039538904 0.101281216336564
AT1G67910_at 5.53408032912175 5.75387927660995 4.66864503279401 4.88147433338065 5.5551694870609 5.35141710319218 6.38376773023526 6.28894361160187 6.75278999840884 6.35325961741832 6.55520927712686 5.82746803796826 5.74130937449405 6.3040739930221 5.50997601079037 5.93690213053502 5.51094949682472 6.19894806824066 6.3567390650522 0.186668149209010 0.178155067764159 0.187726856261748 0.187962626349406 0.183045052475483 0.191987100357136 0.180566540681457 0.178596989963085 0.193783267816342 0.181101362282555 0.181673882484494 0.179116271954462 0.178499192108556 0.185569988053490 0.192301437132899 0.181388919407630 0.198009621545044 0.183333602958030 0.178859247756405 1 1 - 25475222 25475395 25475300.091 25474972 25476008 - gene protein_coding_gene FALSE TRUE AT1G67910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24577.1); similar to hypothetical protein [Plantago major] (GB:CAH59418.1) -0.707741463059903 -7.8383511578428 8.47006727281547e-06 0.126559745190409 8.6049656842918 11.7700225007921 -0.707741463059903 0.0656957389177192
AT1G50640_at 5.34170023824528 6.04224978880978 5.70694904896589 5.86624041167124 6.42207737923723 6.22073733039133 5.13994195184648 5.52996771485206 4.93601918711956 4.62833702498078 6.00893747280281 5.77720551509968 6.81378816075165 6.45143414505491 5.72693937126629 6.62028842434019 5.70843367604411 5.29471605389331 4.57931723266984 0.235743203105579 0.243694973099048 0.247571254739864 0.242471298913255 0.239272620418090 0.263694005038082 0.236151136933272 0.236680713193569 0.243088173972509 0.235743203105579 0.237755459767305 0.241089808123632 0.241993791976353 0.2476497216053 0.243976128113620 0.244523920743545 0.249864718552296 0.242585661097842 0.244254462701799 1 1 - 18761328 18761754 18761512.273 18760816 18762101 - gene protein_coding_gene FALSE TRUE AT1G50640.1 ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3) (EREBP-3) (AtERF3) (ERF3) [Arabidopsis Thaliana] (GB:O80339); similar to ERF7 (ETHYLINE RESPONSE FACTOR7), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G20310.1); similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3 homolog) (EREBP-5) (NtERF5) (GB:Q9SXS8); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.938098078305626 7.82580986939949 8.59805958227359e-06 0.128463608218750 8.59432313254264 11.1661208166674 0.938098078305626 0.145695308530006
AT1G76600_at 5.84630816069035 6.52173240834309 6.98776962831161 7.5845107583803 6.41984877008797 6.66754473746718 4.49468277744786 4.90548105415316 4.46236836265746 3.93592111425161 4.83071908278079 4.96738755447553 4.74235605473078 4.60729913902006 4.87850415692979 4.45989372966924 4.63412592584892 4.60924980519756 3.86416010849012 0.265871965797533 0.274701960965391 0.282420844888850 0.283413681262986 0.277313921569039 0.282975386031996 0.269045398441285 0.267789356234026 0.272427379925125 0.266090861406743 0.265351691435509 0.265351691435509 0.265351691435509 0.265351691435509 0.277431776709623 0.265351691435509 0.265351691435509 0.266892488342898 0.267876516764529 1 1 + 28751970 28752457 28752175.545 28751782 28752739 + gene protein_coding_gene FALSE TRUE AT1G76600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21010.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAB41200.1) 1.05078805467583 7.82297389025271 8.62729058268995e-06 0.128891721305388 8.59191349531003 10.5803223499675 1.05078805467583 0.176685880054464
AT4G27000_at 9.30821134553761 9.39007703305488 9.52815844341797 9.5292771836183 10.0095949335692 10.0288921396679 8.86096062705898 9.05183763812286 9.13369188584769 8.93032902752706 10.0845948420563 9.83135287525172 10.0348845678711 9.80484711081112 9.86026928159976 9.77246174321854 9.71358025683468 9.37075250698798 9.28750000599759 0.146397385592682 0.141038670259786 0.143733678995435 0.149822106404661 0.137158134375224 0.145949285576629 0.142166621367636 0.147909657165316 0.153441022746258 0.152061514289537 0.135784549975633 0.134628403671459 0.139144841878953 0.153603487708108 0.136820386197225 0.136989776913515 0.140806169474259 0.148571409974879 0.143382230604331 4 4|0 -|/ 13555135 13556935 13555674.875 13554610 13557860 - gene protein_coding_gene FALSE TRUE AT4G27000.1 RNA-binding protein 45 (RBP45), putative similar to ATRBP45A (RNA-BINDING PROTEIN 45A), RNA binding [Arabidopsis thaliana] (TAIR:AT5G54900.1); similar to RNA Binding Protein 45 [Nicotiana plumba (GB:CAC01237.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.656564136206454 7.82228491286283 8.63440816236692e-06 0.128989423537599 8.59132792567749 18.9265094369408 0.656564136206454 0.0360974183097796
AT3G53150_at 3.43275190890868 3.7723268870304 5.65868860920915 5.9807321383106 2.70949352398057 2.78898278772624 1.78339996284224 1.40772937652344 2.11499395255942 1.69729661923156 1.79626777415309 1.56897755906216 1.42637566762203 1.60709448828287 1.72909886289252 1.46090323935952 2.08392654169087 1.4094767582728 1.32479003311405 0.243824785191916 0.260648858204686 0.272745077740108 0.262778967318474 0.231697453944108 0.238972603714101 0.230885330375166 0.232761703314425 0.242562636519349 0.233577453072622 0.230804968621531 0.238918516646941 0.227998352317723 0.226704081513161 0.230047628633954 0.236906275402552 0.228931098441937 0.225579168299718 0.228879263711131 3 3 - 19708716 19709149 19708999.182 19708714 19710237 - gene protein_coding_gene FALSE TRUE AT3G53150.1 UGT73D1 (UDP-glucosyl transferase 73D1); UDP-glycosyltransferase similar to DOGT1 (DON-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G36800.1); similar to glucosyltransferase NTGT4 [Nicotiana tabacum] (GB:BAD93688.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.804163570381213 7.81050240898978 8.75711325713083e-06 0.130813757835020 8.58130364326405 5.11557580584241 0.804163570381213 0.104761715336593
AT4G37610_at 3.75207306025408 4.07571981061459 2.49782529626222 2.78531151856696 4.67244395588033 4.58832077160509 3.66105180429026 4.44801175575833 3.9091015691996 4.04483159099815 3.04832509143107 3.30433322249161 2.93940983478870 2.97374858479474 2.22571409201783 4.19486152684675 2.93731321457332 2.73640932380947 5.97471253373092 0.268424006967402 0.255503144602092 0.260607481665627 0.255642443943727 0.273455015689459 0.267661055587841 0.266235797945543 0.262016146905792 0.28093016197416 0.257452348968034 0.25755039050094 0.259772148552031 0.265020072955774 0.261085001653041 0.256930897610395 0.25561603842811 0.275573953870355 0.255503144602092 0.276137812309732 4 4 - 17670617 17671253 17670894.818 17670475 17672347 - gene protein_coding_gene FALSE TRUE AT4G37610.1 BT5 (BTB and TAZ domain protein 5); protein binding / transcription regulator similar to BT4 (BTB AND TAZ DOMAIN PROTEIN 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G67480.2); similar to Zinc finger, TAZ-type; BTB/POZ [Medicago truncatula] (GB:ABE77424.1); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.973053129391351 -7.809435393187 8.76831775817408e-06 0.130972362353846 8.58039489847352 7.65404287631419 -0.973053129391351 0.156112018720598
AT3G28500_at 3.25804264790623 2.84161942212053 4.69161887683962 4.16070009707637 2.95438021802005 3.02242066670517 5.18781884543083 5.00114275894836 7.3789205266248 3.20091524532601 3.15765049103334 2.64491876629525 3.01447565685075 3.02379529428983 3.56260542119802 5.29499560056044 3.69936709893239 3.23336262871308 3.81959179980119 0.219432257520345 0.223968445752085 0.224027121536407 0.219946314908034 0.219432257520345 0.225260066815363 0.219432257520345 0.221646589579602 0.235931675069119 0.224662323739162 0.224185603665827 0.219432257520345 0.234671113302679 0.219432257520345 0.219713751680084 0.236620972621224 0.219432257520345 0.219432257520345 0.221147098406585 3 3 + 10683443 10683759 10683592.455 10683334 10683968 + gene protein_coding_gene FALSE TRUE AT3G28500.1 60S acidic ribosomal protein P2 (RPP2C) Identical to 60S acidic ribosomal protein P2-3 (RPP2C) [Arabidopsis Thaliana] (GB:Q9LH85); similar to 60S acidic ribosomal protein P2 (RPP2E) [Arabidopsis thaliana] (TAIR:AT5G40040.1); similar to 60s acidic ribosomal protein-like protein [Solanum tuberosum] (GB:ABA40434.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.855394387395525 -7.80442874989969 8.82109807154888e-06 0.131751920796654 8.57612877898581 8.01657072178996 -0.855394387395525 0.121725292158467
AT4G37010_at 2.51982656119791 2.86267685424167 4.08873655131337 4.34016955274766 2.72145367356288 2.48668191517902 1.01173864966954 0.930303323743501 1.42113278648526 1.00761734562232 1.21483415863379 1.20561824800045 0.795724736704097 0.832897819318342 1.42307677799035 0.956420754552053 1.16642444032288 1.13110233499498 1.08453666771678 0.278398603260341 0.277974238218229 0.318793300812819 0.306504320330786 0.271871631215278 0.274299975747975 0.261005825673151 0.257538434903609 0.256137947129745 0.266650760750015 0.258660785565951 0.256137947129745 0.261265426226045 0.259137470008521 0.266292433525649 0.256137947129745 0.257032793038923 0.26856160179616 0.265354829789481 4 4|0 +|/ 17444415 17444991 17444726 17444303 17445609 + gene protein_coding_gene FALSE TRUE AT4G37010.1|AT4G37010.2 caltractin, putative / centrin, putative|calcium ion binding similar to ATCEN2 (CENTRIN2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G50360.1); similar to Caltractin (Centrin) (GB:P41210); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.748895442430372 7.79255785691301 8.9476144730676e-06 0.133632622155265 8.56599974599145 3.75112738958498 0.748895442430372 0.085222063446745
AT1G80850_at 3.97924221755589 4.77693184412117 3.03012545992524 3.58942651048706 3.19250412578019 3.32434509002519 5.19802816070536 5.0732237703653 5.42363077320554 5.50726768143188 4.40753671884044 5.74748599728186 4.77392041810707 5.124012175816 5.67566858054907 5.49399821295574 4.30166803875592 5.10540322108628 6.05017705775654 0.248368126376836 0.248368126376836 0.258364780854154 0.264479118247482 0.257801742420858 0.264091251881843 0.263261455382593 0.248408081980026 0.281099272496097 0.252371435288820 0.253016536838287 0.253690420436105 0.250212239842685 0.248368126376836 0.251111051882566 0.252802264914128 0.252942357818702 0.256509215659689 0.257272393520811 1 1 - 30390530 30391742 30390929.182 30390341 30392414 - gene protein_coding_gene FALSE TRUE AT1G80850.1 methyladenine glycosylase family protein similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT1G15970.1); similar to Protein prenyltransferase, alpha subunit [Medicago truncatula] (GB:ABE92847.1); contains InterPro domain Methyladenine glycosylase; (InterPro:IPR005019); contains InterPro domain DNA glycosylase; (InterPro:IPR011257) -1.02720151766989 -7.79212559132773 8.95225816082432e-06 0.133693023373750 8.56563053788989 9.39001348464836 -1.02720151766989 0.171497484521245
AT3G61190_at 3.96269913951778 4.28770029647972 7.12237602288056 8.24614032019418 3.686887770479 3.23106875226924 1.61974718182584 1.57622396218785 2.16002521287095 2.01826148452918 1.91949643002561 1.57053542163673 1.28088659309939 1.93182830881197 1.87101893602315 1.58906565312419 1.71472164274067 1.57472145555347 1.76372934356551 0.286386592316583 0.291229570710051 0.288355169261161 0.280357779974009 0.279691524453699 0.287860681449285 0.267212882622242 0.265568248756217 0.265597248536026 0.266644787971327 0.266436960434578 0.270959238123182 0.276592914472483 0.267796391918054 0.271034269257877 0.265568248756217 0.265568248756217 0.269672618533222 0.265568248756217 3 3 - 22661821 22662280 22661957.273 22661502 22662424 - gene protein_coding_gene FALSE TRUE AT3G61190.1 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. similar to BAP2 (BON ASSOCIATION PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT2G45760.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 1.20544393146232 7.79085153319426 8.96596005943618e-06 0.133888681567560 8.56454218363706 6.04770859012032 1.20544393146232 0.217398070904411
AT3G17100_at 7.94731724954003 8.05136820013885 7.82111976163729 7.9529713369301 8.67243373648882 8.55612540961608 7.83859899776277 7.95015078118818 7.92991809312869 7.60770629684084 9.37355219774475 9.13825736786091 9.26908595002778 8.90813050628257 9.19274806354801 9.12367802034558 8.56735713585378 8.79069385902716 8.55634799375635 0.143640171460551 0.140231395814523 0.14497340825959 0.140352181504407 0.138840442541684 0.142368834200554 0.143244095483582 0.148193491681018 0.143992936006707 0.140876463680311 0.141929502239442 0.141947960624480 0.143277488071502 0.154335838590425 0.145190621530914 0.139994198192242 0.151797214423949 0.141824614944899 0.136952730348162 3 3 + 5831675 5832159 5831886.909 5831200 5832425 + gene protein_coding_gene FALSE TRUE AT3G17100.1|AT3G17100.2 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06590.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE82804.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 0.658958756844153 7.78615164675334 9.01670084778018e-06 0.134637377059054 8.56052538444857 16.6371416919102 0.658958756844153 0.040282303076484
AT3G15210_at 4.839762396166 5.58857334068496 5.30893826128566 5.85063082767355 5.66466612738204 6.16796306524108 3.48091124136032 4.68700620916783 3.75450337426594 3.27179037903350 5.44440910530464 5.44720723884843 5.33222443770257 5.14758264905162 5.05739658792383 5.464015366618 5.15531321086138 4.65078607771992 3.20641331611839 0.229437132857080 0.220523676471977 0.223650760040701 0.226484418170035 0.229514955767953 0.231999841322798 0.23123035002574 0.220523676471977 0.229645754183291 0.261033407794382 0.238993066714269 0.220523676471977 0.227355162934422 0.223627072372073 0.226338151530106 0.220523676471977 0.23143075184689 0.229373376697827 0.238795165555775 3 3 + 5121671 5122107 5121911.273 5121429 5122569 + gene protein_coding_gene FALSE TRUE AT3G15210.1 ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. Identical to Ethylene-responsive transcription factor 4 (Ethylene-responsive element-binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4) (ERF4) [Arabidopsis Thaliana] (GB:O80340;GB:O23107); similar to ATERF-8/ATERF8 (ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4), DNA binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT1G53170.1); similar to ethylene responsive element binding factor 4-like protein [Thellun (GB:AAM19703.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.45022537566600 7.7770632289727 9.11570057670433e-06 0.136106525310772 8.55274914367226 9.51019102898339 1.45022537566600 0.277002170666002
AT1G30240_at 6.74577315059773 6.68289456056922 7.03407427689739 6.58891661454336 7.41061100845085 6.31970364362301 7.7981822839818 7.23005571589547 5.89277476681745 7.450309429594 4.45601990564904 4.17496541058565 5.33731984445972 4.15638527051044 3.6976038383808 4.31861660414218 5.64568679519048 4.53547420160664 6.89331853095493 0.275349339466381 0.272238732173567 0.277093175435253 0.265539711116547 0.283663142204445 0.297823907475357 0.276072592133788 0.277165210028693 0.277463167970204 0.265539711116547 0.277270561146984 0.276047083479983 0.273392412682121 0.275608032135353 0.282801405621876 0.265539711116547 0.292605347443948 0.275623982362202 0.275620062788405 1 1 - 10641257 10641792 10641534.818 10641083 10645919 - gene protein_coding_gene FALSE TRUE AT1G30240.1|AT1G30240.2 binding similar to Proline-, glutamic acid- and leucine-rich protein 1 (Modulator of nongenomic activity of estrogen receptor) (GB:Q9DBD5); similar to proline-, glutamic acid-, leucine-rich protein 1 [Mus musculus] (GB:NP_083507.2); similar to Os05g0295900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055114.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -1.24055431692779 -7.7768356124909 9.11819497330985e-06 0.136134650951516 8.55255424215704 12.6191396866221 -1.24055431692779 0.226626677580049
AT1G63310_at 2.92035059221544 2.93393857073357 2.13255806213943 2.11753213577362 2.1470738964575 2.05765046210669 3.38964085396604 3.46775021214607 4.06960000692815 3.68905200176867 4.07317899108577 4.66505605123214 3.24694828748813 3.45263136117382 4.29915493558043 3.82148079136858 2.63014021160169 3.6655264283902 4.06966451349875 0.231079329530967 0.227398821390403 0.225232036306768 0.230162143288397 0.229218221610911 0.234268765065240 0.222235996463163 0.232685631629312 0.228924692153388 0.222235996463163 0.222345342073661 0.231158358616649 0.226993282721422 0.22423055583873 0.229888415840220 0.225788660163246 0.226743475883828 0.222565341631545 0.226825757001084 1 1 - 23490252 23490616 23490441 23489972 23490750 - gene protein_coding_gene FALSE TRUE AT1G63310.1 similar to oxidoreductase, acting on NADH or NADPH [Arabidopsis thaliana] (TAIR:AT1G75260.1); similar to Os04g0105200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052007.1); similar to B0616E02-H0507E05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67825.1) -0.637611979985534 -7.7747061683689 9.14156670762977e-06 0.136474449378205 8.550730509039 6.48308025134494 -0.637611979985534 0.0208443132608874
AT3G50700_at 8.27828868384884 8.78443739793353 8.050423081165 8.22125170972453 9.34790495711884 8.2656936780962 6.4328636672959 6.48599354843816 5.4855898084069 6.09917222095856 7.54430410408059 7.89603618350161 7.69426869806626 7.23804903637414 7.01370193993948 6.63291172975194 6.94182681417015 7.14829441611949 6.1200253036836 0.229971503200959 0.231149907170643 0.229787171349205 0.228405176371781 0.233322959755151 0.2484889041398 0.229566395906319 0.231379076156754 0.266366259464679 0.245374129690928 0.236563875146469 0.233681539392603 0.231296341444474 0.245265753763778 0.242538794288252 0.234980392688255 0.249220962418914 0.250100094605037 0.235794017497283 3 3 + 18853261 18853731 18853446.364 18851394 18853931 + gene protein_coding_gene FALSE TRUE AT3G50700.1 ATIDD2 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 2); nucleic acid binding / transcription factor/ zinc ion binding zinc finger protein, similar to maize Indeterminate1 (ID1) similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G66730.1); similar to BAC19.12 [Lycopersicon esculentum] (GB:AAG01127.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 1.16900043485724 7.77048804646698 9.18805347780951e-06 0.137159262316740 8.54711608502575 14.5659920369194 1.16900043485724 0.209057839664796
AT4G08590_at 1.76119081149953 2.49413713007306 1.38458250875987 1.80286546871511 1.46098794809721 1.51881089171068 2.91132557179790 2.88302079073385 2.63945814526013 4.04616973030766 1.95473005904055 1.97648515690374 2.19989831497005 2.02916624321007 2.2243790246982 2.61888438311358 2.03316112234164 2.45053721000787 2.56263271496183 0.229712830639313 0.231027301939245 0.235432593103162 0.231018586975886 0.227717141028769 0.239518538073855 0.228401458453368 0.248583557898733 0.229193292345094 0.247092685802369 0.228339289493213 0.231562454224385 0.231945847841681 0.236986828893295 0.230610726337332 0.228019994699291 0.232178679387105 0.233960165483409 0.228934370355309 4 4|0 -|/ 5464095 5465263 5464569.8 5463882 5466668 - gene protein_coding_gene FALSE TRUE AT4G08590.1|AT4G08590.2 zinc finger (C3HC4-type RING finger) family protein similar to VIM1 (VARIANT IN METHYLATION 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G57820.2); similar to similar to A. thaliana AT4g08590 [Arabis gemmifera] (GB:BAC11916.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to VIM1 (VARIANT IN METHYLATION 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G57820.1); similar to similar to A. thaliana AT4g08590 [Arabis gemmifera] (GB:BAC11916.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.933727606298097 -7.76702490287664 9.22641019537378e-06 0.137722624986344 8.544146726403 4.66144449990453 -0.933727606298097 0.146465558116260
AT2G37940_at 8.7712988675247 8.63868829488416 8.7258434938264 8.7880170573717 8.84281986473612 8.58005001648533 6.69728983251508 6.97393337851244 7.92906284870718 7.34508609633739 8.08449493597978 8.40698421811805 7.73730237045755 8.37183801522048 7.72755571759981 7.7236410191552 7.4781911710198 7.99618767086447 7.16786362134516 0.153861908350416 0.141803435537952 0.151491794651371 0.146004521033528 0.147858460843645 0.145214480204539 0.167652301507591 0.150160666161295 0.155321273124915 0.152495585305223 0.145407750107952 0.144448993101235 0.144751893434266 0.142227416934742 0.148122198065297 0.141803435537952 0.149348209356753 0.153775420281319 0.149479728720397 2 0|2 /|+ 15885542 15886414 15885943.429 15883828 15886733 + gene protein_coding_gene FALSE TRUE AT2G37940.1 similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT3G54020.1); similar to Os01g0850100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044812.1); similar to hypothetical protein PY02331 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_730203.1); similar to Os05g0287800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055096.1) 0.711991774542222 7.76617589345618 9.23583986526983e-06 0.137854145829017 8.54341851503463 15.9629652233646 0.711991774542222 0.0707263974861313
AT1G11300_at 4.215458253666 3.77632674428285 2.65125521894904 2.47774745349459 2.60281116073842 2.72741802077221 2.26827490742045 2.30490751980807 4.46021621486870 3.77881918377933 3.22805612140136 4.79592432516843 2.99668485836519 2.93358702042362 3.72858004289427 2.71200649906941 2.38521240990329 3.1401145477936 4.37148561545956 0.205934589481444 0.204447825065093 0.195821962157993 0.202303448449774 0.204105148661816 0.209918344300249 0.201492084118254 0.202881835817710 0.212936207084658 0.195821962157993 0.20385567615471 0.198899151663763 0.198176388158008 0.199142380783721 0.196478002347488 0.195891271469035 0.205229307626631 0.201748055214022 0.204158585570949 1 1|0 +|/ 3800055 3800690 3800516.8 3794238 3800719 + gene protein_coding_gene FALSE TRUE AT1G11300.1 carbohydrate binding / kinase similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11330.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11350.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.744960084690456 -7.76413193230502 9.25858407877373e-06 0.138184367375698 8.54166495720641 6.59978877630641 -0.744960084690456 0.0847456030422108
AT3G13672_at 3.37572872932782 3.76537598713032 3.69609491948958 3.5872108882772 3.91449080523281 4.34456987417688 4.13071998710852 4.25891950006208 4.55819650725915 4.11664732659888 2.13995440344989 1.70796287572525 2.05645736081369 2.23677576237051 1.73192528995589 2.13153225464447 2.82323176743073 2.05249147983451 2.45578399186739 0.250369633691472 0.245092383727366 0.244627745039075 0.259942924732395 0.246672104352278 0.250943617535961 0.256105500770638 0.251581924199237 0.256741756884244 0.251594086590321 0.260790174564414 0.266046552153297 0.251934594916513 0.245886769850248 0.268374810905169 0.242059577839999 0.246483117793531 0.271603905492937 0.247834747284753 3 0|3 /|- 4473597 4474156 4473841.8 4472569 4474385 - gene protein_coding_gene FALSE TRUE AT3G13672.1|AT3G13672.2 seven in absentia (SINA) family protein similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G58040.1); similar to Os07g0659800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060528.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323)|similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G58040.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162) -0.798631152538378 -7.762358177306 9.27837046577587e-06 0.138470400831239 8.54014274093045 6.79426417361061 -0.798631152538378 0.104563379678021
AT4G32690_at 4.9218598810545 5.07763561097446 5.81877797239669 5.66457992475183 5.37122815536447 5.31831820296464 5.69289491044235 5.56046226038226 3.87211268574742 4.67261655471313 5.26273167578326 5.09227134131793 4.94547387736245 5.2170184809104 5.18268569279045 5.21025610403676 5.66243656121901 5.6400955633108 3.99316678037672 0.186622490318809 0.189794969780813 0.202995113589462 0.2001174411886 0.188302677495524 0.194474986583414 0.192592620691152 0.197641110937539 0.205890475009344 0.186920902601055 0.187496038718885 0.191211958184486 0.185388833864037 0.190421747497859 0.188645029419361 0.185388833864037 0.194009517212680 0.187744304018550 0.200707297718788 4 4|0 +|/ 15765509 15766548 15765985.778 15765407 15767095 + gene protein_coding_gene FALSE TRUE AT4G32690.1 GLB3 (2-on-2 hemoglobin like gene 3) Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast. similar to 2-on-2 hemoglobin [Datisca glomerata] (GB:CAD33536.1); contains InterPro domain Globin, bacterial type; (InterPro:IPR001486); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Globin-related; (InterPro:IPR012292) 0.663667693317484 7.7576017740444 9.33165371593919e-06 0.139256268402961 8.53605867460782 10.1561795326433 0.663667693317484 0.0452533762735705
AT1G53790_at 1.32395829009354 1.37794498921447 1.99485291326492 2.08219088380978 2.52597222619269 2.15002325968246 1.16564459217406 1.16588335196243 1.35898286446000 1.22589459021959 1.44780019172183 1.49445787024147 1.17094548509543 1.61039091418788 1.69495233033696 1.87718945086741 2.09935852192224 1.65976411540570 0.886881001121597 0.19461465400358 0.197741181699566 0.205003725419954 0.196473666153336 0.216250877642665 0.200065282138696 0.200168086756912 0.193435498946905 0.214262084893803 0.201238513908332 0.195807863503360 0.199327790103312 0.198266192891247 0.192790080090526 0.203574627607838 0.195243805875601 0.21119864428898 0.193131553057224 0.192790080090526 1 1 - 20083383 20083879 20083671.636 20082749 20085123 - gene protein_coding_gene FALSE TRUE AT1G53790.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G31470.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.702253278124153 7.73710692062928 9.56504479686833e-06 0.142729598458869 8.51842455497053 3.11786390258567 0.702253278124153 0.0674425280579037
AT1G12710_at 7.32965575055474 7.50759638349252 6.81113849820663 6.69227292586271 8.78121745670528 7.69279175210108 5.47135544141299 5.00597643236883 3.36907607510315 3.45714116406216 5.14609879176507 4.58478064023550 4.83348197499586 5.10570294648137 3.64802063520531 4.08519086465856 4.98213964744287 4.10832123659763 3.39869634641352 0.269877333136948 0.273287992924969 0.271422773484039 0.267461958532563 0.264405635740434 0.264247824570566 0.265666108670150 0.275678832222741 0.275747749461501 0.271755151434260 0.268892220317917 0.268721405849057 0.269837122240207 0.276037847900099 0.264247824570566 0.264247824570566 0.265841552448805 0.266720430945401 0.268274461567681 1 1|0 -|/ 4326991 4328011 4327331.778 4326737 4328479 - gene protein_coding_gene FALSE TRUE AT1G12710.1 ATPP2-A12 (Phloem protein 2-A12) similar to ATPP2-A11 (Phloem protein 2-A11) [Arabidopsis thaliana] (TAIR:AT1G63090.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE90560.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 1.15956085995408 7.73096638961791 9.63619006739443e-06 0.143781591995592 8.51312964797603 10.8965113904376 1.15956085995408 0.208172606797868
AT3G14440_at 3.29190242116452 3.89848852935673 4.82787558013551 4.69170277829752 4.69707277369205 5.05133527616001 3.76201581720149 4.83329459857722 2.36335346882572 2.74362237010909 4.52001237167067 3.50763185187138 5.62857683828298 4.35494546328895 3.66980798342397 4.10338820519798 4.95441741762963 3.19166147535323 2.91998924237307 0.215292770703354 0.218099316460012 0.215343226951440 0.221177715505752 0.217847027451720 0.217524897095175 0.213774615198187 0.217688430079613 0.234349051281194 0.219437609044720 0.21342570476979 0.218812983162029 0.225696710682046 0.211605011373592 0.21262828044327 0.215134810683139 0.226793379778415 0.218225820415357 0.2206660444343 3 3 - 4831712 4832232 4832052.727 4831295 4833606 - gene protein_coding_gene FALSE TRUE AT3G14440.1 NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane. similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT4G18350.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to 9-cis-epoxycarotenoid dioxygenase [Brassica rapa subsp. pekinensis] (GB:AAV35466.1); similar to putative 9-cis-epoxycarotenoid dioxygenase [Solanum tuberosum] (GB:CAB76920.1); similar to 9-cis-epoxycarotenoid dioxygenase 3 [Citrus clementina] (GB:ABC26013.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) 1.21811071711675 7.72922156367671 9.65650975604812e-06 0.144075125560238 8.51162413730366 7.84019108579437 1.21811071711675 0.222940479824075
AT1G25275_at 11.9288683808416 11.9132562348172 12.2096965099999 12.2441213393760 12.5297363765406 12.3491464703136 10.8493578132495 10.8198164465137 11.6360464884665 11.5047748105299 11.9837905524286 12.1433296886970 11.7944537254700 11.9271467819426 11.8202020185732 11.8635034704259 11.7425323017382 11.9811227757730 11.5832990446095 0.0775478192558678 0.0783209204345745 0.0799216390560942 0.080172225843362 0.08092131227593 0.0807099450793776 0.0780699271741217 0.0785725983156653 0.0837327061354432 0.077916384420998 0.0746217830222243 0.07464116765669 0.0767679840426045 0.080817765300595 0.0766212080875107 0.0742849295817277 0.0819388738942233 0.0777647134635548 0.0765449749649439 1 1|0 +|/ 8860717 8860951 8860804 8860658 8861349 + gene protein_coding_gene FALSE TRUE AT1G25275.1|AT1G25275.2|AT1G25275.3 unknown protein 0.643826919190564 7.72257343681805 9.73435564880624e-06 0.145226851924540 8.5058839197022 23.5963584192480 0.643826919190564 0.0323358622607687
AT1G08500_at 3.19429739519496 3.17151340731591 2.78353035728349 2.48997248540200 2.80149323701372 3.08045249086886 1.97678109075732 2.21419434085108 2.49203415118646 1.64813919197082 3.45159495070371 2.84924805727786 3.34047538501434 3.55925163590126 3.46484651380420 3.35029089241718 2.84838330205073 3.59103536676726 1.83699913819813 0.195669106415409 0.195849300072208 0.196721361248179 0.197483219922413 0.196547760479256 0.200075884227275 0.198214112285462 0.199523212505745 0.196277641471080 0.195123029686491 0.195688809219703 0.192343058691631 0.196894590752217 0.197352817624135 0.201144287175740 0.195397023776384 0.195968390921031 0.195094492258161 0.197633628915941 1 1|0 +|/ 2689208 2689855 2689558.2 2689019 2690048 + gene protein_coding_gene FALSE TRUE AT1G08500.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20570.1); similar to Os01g0281600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042760.1); similar to Plastocyanin-like domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93859.1); similar to Os12g0454600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066723.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.732082759992896 7.71778380313984 9.79085837440832e-06 0.146060025229423 8.50174452823257 5.36367014564119 0.732082759992896 0.081331761507808
AT1G80130_at 8.78149349229991 8.8858719985282 9.17353061549285 9.35377164472515 10.2865525294595 9.9538605416601 8.5635670843899 8.80305453961948 9.27237941453245 8.33277530266751 9.17524954043368 8.60529551547943 10.2217008575322 8.9875140015657 8.63875812599741 10.2604533551219 9.98470031958376 9.47069316395929 9.08295434374012 0.102375399712413 0.103798871573392 0.106185194696223 0.108632479628615 0.110205601091940 0.116268020716421 0.107541739795528 0.103287212721685 0.106534649339372 0.110967604114160 0.101245508173117 0.106222718615034 0.108898865535090 0.107308376413731 0.106665458940224 0.104266041228591 0.104518266427842 0.101245508173117 0.105581618867582 1 1 - 30146176 30147019 30146647.182 30145855 30147538 - gene protein_coding_gene FALSE TRUE AT1G80130.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20190.1); similar to Os06g0606700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058025.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92930.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.727720655218756 7.71657998451253 9.80511515221548e-06 0.146262902725598 8.50070363173774 18.3822537875748 0.727720655218756 0.0795712610243093
AT1G12810_at 6.02176261041503 6.58985809298213 6.898240409801 7.32755448177438 7.47283535970322 7.00338597545225 6.2699349738719 5.86903756657262 4.79652348748916 4.68477631507322 5.52741635074469 5.50391530971083 5.27323892370003 5.88298571344398 5.42785391800455 5.81592216531601 6.067411517488 5.9021446028218 4.59493740231010 0.249875743157276 0.249945404751559 0.256717421024734 0.245266586640776 0.252935788631169 0.278406876538108 0.243247673019589 0.262938821483442 0.2507656516916 0.252933554151938 0.251759013921332 0.245924864770123 0.24935896670333 0.240361421075342 0.241889280642640 0.241000988267541 0.250903209687177 0.257814775193308 0.250418276137643 1 0|1 /|+ 4367556 4368478 4367728.8 4367254 4368820 + gene protein_coding_gene FALSE TRUE AT1G12810.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G49840.1); similar to Os09g0510000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063632.1); similar to conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] (GB:ZP_01203978.1); similar to Os08g0536400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062364.1) 0.9854438700426 7.70824560278569 9.90443422484271e-06 0.147734540897754 8.49349159799056 11.8651712492938 0.9854438700426 0.163089170797748
AT3G16950_at 5.59480572017209 5.02797190044945 3.14798897628752 3.27816089739233 4.24826184041745 4.77555731942333 6.41541509204834 6.71064330523865 5.03059891848482 5.19811553849472 6.09063990654538 6.05663907658347 5.30047478633957 5.75899556544956 5.82784872828566 4.55372759723212 5.31204642129557 5.55183401731313 5.74491519612669 0.226784040507518 0.222154952137472 0.230367485200729 0.233890643160303 0.223841905418104 0.224196008095145 0.223068071404603 0.226300242281929 0.220582426955491 0.226949967477835 0.220449458088228 0.22447673729054 0.221630890148362 0.22425267546357 0.223644637623225 0.233745675702801 0.226636211283044 0.223850029325625 0.220449458088228 3 3|0 -|/ 5786958 5787851 5787301.875 5786391 5790531 - gene protein_coding_gene FALSE TRUE AT3G16950.1|AT3G16950.2 LPD1 (LIPOAMIDE DEHYDROGENASE 1) encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds. similar to dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) [Arabidopsis thaliana] (TAIR:AT4G16155.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain CUB; (InterPro:IPR000859); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027)|similar to dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) [Arabidopsis thaliana] (TAIR:AT4G16155.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.921367100709245 -7.70205492505185 9.9789083305781e-06 0.148835417750572 8.48812823736542 10.3403851214700 -0.921367100709245 0.145143818539203
AT3G17420_at 3.48629331477111 4.15815376725132 5.00156290238788 5.32848436973214 3.70068886357924 3.98034779463135 3.08852063533689 3.03643548975866 3.13657131392266 3.01897642954330 3.46794938433972 3.81116800768312 3.58671522652750 4.05548591449905 4.07682986492408 3.39754322916888 3.62907239918251 3.90333626191190 2.86556222331703 0.213732971246700 0.20800354073268 0.214475813636407 0.210082141117481 0.20800354073268 0.214862406348613 0.209322863396256 0.20800354073268 0.209441411411744 0.208348435481344 0.210538624995469 0.208939474450836 0.212438127862169 0.217071557037091 0.209518330465113 0.20800354073268 0.209321128436247 0.20820887249094 0.211320300402064 3 3|0 -|/ 5959658 5960459 5959984 5959218 5962185 - gene protein_coding_gene FALSE TRUE AT3G17420.1 GPK1 (Glyoxysomal protein kinase 1); kinase serine/threonine protein kinase-like protein similar to kinase [Arabidopsis thaliana] (TAIR:AT5G18500.2); similar to putative receptor-like protein kinase 3 [Glycine max] (GB:AAU10525.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.89719803061921 7.69253765143895 1.00945802265395e-05 0.15055056949861 8.47987227512506 7.34658548799303 0.89719803061921 0.138356753873933
AT1G63840_at 7.01473968825006 7.74243559537809 9.48135043341799 9.6528978825985 7.64632709005265 7.97358041528912 4.66328825768817 5.90187506513784 3.62141288351424 4.70543861927304 3.9847613468535 4.20623229987622 4.20762109280468 4.63777849564593 4.04675265965875 5.7328697617433 5.3278332450154 3.73048234775960 4.10567120701117 0.292233652311981 0.278633125624415 0.282115802632274 0.283851159832524 0.279584889469343 0.29385379274386 0.274920487019474 0.27347310425764 0.278986337661152 0.27347310425764 0.275471036219077 0.276244697393765 0.281389913845625 0.276413847405774 0.285227231700075 0.27347310425764 0.27347310425764 0.278250713183543 0.280793979038793 1 1 - 23693693 23694119 23693913.545 23693360 23694470 - gene protein_coding_gene FALSE TRUE AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41400.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.34903573664811 7.6883489117236 1.01459465657901e-05 0.151306501135628 8.4762346003397 11.8237946248611 1.34903573664811 0.256690990505325
AT1G01560_at 5.00152096371022 5.33971069258287 7.48948019633022 7.15645904502529 3.97867438862325 3.87147149683963 2.27277197753071 2.73047543960270 3.83953904102646 2.78147363620088 3.05410202525298 3.49155336106493 2.57656530538088 3.54610483102188 2.76882289135781 3.02721965595556 3.10466466244984 3.44016958563768 3.18549386093899 0.238283705942622 0.246329214894758 0.273241672109540 0.259379592145289 0.238655521645366 0.228969037101373 0.246291547323416 0.228969037101373 0.230762560982242 0.236555765019131 0.228969037101373 0.231411756384827 0.238505988807489 0.237347518838627 0.239377216755612 0.228969037101373 0.234425189698295 0.234764078165859 0.233065665373414 1 1 + 203350 204112 203747.091 202263 204335 + gene protein_coding_gene FALSE TRUE AT1G01560.1 ATMPK11 (Arabidopsis thaliana MAP kinase 11); MAP kinase/ kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 11 (EC 2.7.11.24) (MAP kinase 11) (AtMPK11) (MPK11) [Arabidopsis Thaliana] (GB:Q9LMM5); similar to ATMPK4 (MAP KINASE 4), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G01370.1); similar to double HA-tagged mitogen activated protein kinase 11 [synthetic construct] (GB:ABG54338.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.822608145195527 7.67786405867931 1.02757600174403e-05 0.153232133380070 8.46711821853727 7.92756342627426 0.822608145195527 0.115605217226616
AT1G14370_at 8.96364236100705 9.27675211722794 9.79088519596881 9.88425359133251 9.66918849463895 9.08580639511166 6.07533659617132 6.49136062571652 6.56886028081852 6.62981099083766 6.37583056447763 6.16210125852074 6.22108403522907 6.52216140901433 5.68827422960724 6.2479881211321 6.59019008801115 6.41707374009718 6.02570556736457 0.264404859835139 0.261610826698518 0.263431812673273 0.263124177252016 0.265763994010143 0.274580302037257 0.258762249966436 0.264417703133757 0.277175953147531 0.258762249966436 0.258762249966436 0.260497451201145 0.261776879880613 0.261536868095962 0.258762249966436 0.259856542383254 0.265105639283892 0.267890510315271 0.258762249966436 1 1 + 4917123 4917893 4917613.727 4915571 4918133 + gene protein_coding_gene FALSE TRUE AT1G14370.1 APK2A (PROTEIN KINASE 2A); kinase Encodes protein kinase APK2a. similar to APK2B (PROTEIN KINASE 2B), kinase [Arabidopsis thaliana] (TAIR:AT2G02800.2); similar to putative protein kinase [Solanum demissum] (GB:AAT40481.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.88786140599327 7.67179256917608 1.03517482218920e-05 0.154354917736631 8.4618320424498 14.9977599440309 0.88786140599327 0.136281623861236
AT3G03470_at 10.5820739526758 10.6852902687150 11.933007209767 11.9977558408114 11.6509243369765 11.3665086636657 10.9232957715041 10.9019725788923 9.68249346731193 10.1573420809297 10.0703581637910 8.91449812958556 10.6363287810889 10.4277310302858 9.06959041924832 10.9802692414301 10.8966453850367 10.2643039387313 9.5093822789936 0.0941503814748343 0.0921981303477098 0.0975234502518153 0.0921981303477098 0.0961993720764745 0.0956506670714923 0.0947816814415876 0.0935448982633143 0.111462148613628 0.0948435315171644 0.102763921289807 0.0975803326852203 0.0993692621466974 0.098665915493713 0.106119602742545 0.0921981303477098 0.101609904996653 0.0993916049479418 0.0946674274148749 3 3|0 -|/ 824836 825325 825094.5 824559 826444 - gene protein_coding_gene FALSE TRUE AT3G03470.1 CYP89A9 (cytochrome P450, family 87, subfamily A, polypeptide 9); oxygen binding member of CYP89A similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE86838.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.669141948464836 7.66294355319719 1.04635843903297e-05 0.156012043259816 8.4541182194833 21.2253727004900 0.669141948464836 0.0536728828859554
AT2G43650_at 3.96419393477272 4.41231106076288 3.65164575708154 3.65070707214837 3.58705930970166 3.46497776619904 5.00288981753353 4.79850003570877 3.92250981068784 3.48843409551331 3.18254781192007 3.2849920960928 3.36714373684246 2.78849418441985 3.31591748242394 3.34901067592582 3.2965404458721 3.33873870647135 3.89905014241327 0.190410887638376 0.193084918254137 0.190410887638376 0.190922194758982 0.190410887638376 0.195971172538377 0.192338056321438 0.198612487248065 0.192806718864767 0.197703692828975 0.194508484046415 0.195014407616807 0.209210599407665 0.194950573748468 0.190410887638376 0.193656176720911 0.196303731658481 0.198426204474265 0.190657229795977 2 2|0 +|/ 18109014 18109514 18109311.444 18106315 18110422 + gene protein_coding_gene FALSE TRUE AT2G43650.1 Sas10/U3 ribonucleoprotein (Utp) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28230.1); similar to Putative Sas10/Utp3 family protein, identical [Solanum demissum] (GB:AAT39972.1); contains InterPro domain Sas10/Utp3; (InterPro:IPR007146) -0.742725554810292 -7.66029412721758 1.04973210712459e-05 0.156504559851205 8.45180650843262 7.57174617358899 -0.742725554810292 0.0878137625651303
AT1G35670_at 6.25455018492109 6.24557710678565 5.54960090492389 5.4489314343068 5.95486194402377 5.90711190408285 6.75924494216957 6.97921207886987 7.0477191534223 6.24281538857148 6.66755230818519 6.13607657524731 6.14250789468011 6.4085699419787 6.10643775360135 5.87459229678273 5.96834889670878 5.33630702395485 6.32247481860755 0.202243666978193 0.198996932918031 0.204717186374258 0.205254976746946 0.203760609884158 0.201566484592620 0.209627843296059 0.201511148264606 0.207323870730715 0.203840997411658 0.200289808376998 0.205740043305562 0.21092052603787 0.209824219436787 0.198675426305707 0.201769846304424 0.20542331509263 0.214727423910403 0.202162693242085 1 1|0 +|/ 13208443 13209221 13208904.667 13206593 13209464 + gene protein_coding_gene FALSE TRUE AT1G35670.1 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calcium- and calmodulin-dependent protein kinase/ kinase Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. similar to CPK4 (calcium-dependent protein kinase 4), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G09570.1); similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CDPK9 (CALCIUM-DEPENDENT PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G23580.1); similar to calmodulin-like domain protein kinase isoenzyme beta [Glycine max] (GB:AAB80692.1); similar to seed calcium dependent protein kinase b [Glycine max] (GB:AAP03013.1); similar to calcium-dependent protein kinase [Vitis labrusca x Vitis vinifera] (GB:AAR28766.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.651070115913475 -7.65364672511705 1.05824829678479e-05 0.157763656084676 8.44600203451057 12.4462457491402 -0.651070115913475 0.0426994510741951
AT3G13340_at 7.51064425565531 7.64035454356966 7.80576938454872 7.7806633715953 8.44111045979918 8.34118984597849 7.2828346066181 7.47627595203064 7.13945019410103 7.00690046981028 7.58317773309016 7.70801870702141 7.6614111554118 7.86205386534485 7.44910603139028 7.91987531995293 7.81970035762363 7.65479756856427 6.90439277815858 0.175362576764456 0.165232216307166 0.177135977630041 0.166435296619697 0.178540149805067 0.176971965344170 0.180145548835355 0.164717075932480 0.179149652860726 0.178085745021714 0.165268747072008 0.165753288322238 0.168015003868388 0.168565821982319 0.175347889611568 0.168592298752790 0.185600533515597 0.166556144627192 0.177895230656943 3 3|0 +|/ 4333789 4334586 4334324.556 4331763 4335080 + gene protein_coding_gene FALSE TRUE AT3G13340.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G55680.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G56190.2); similar to Os08g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062140.1); similar to Os02g0721600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047961.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE85775.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.652504518810974 7.64740103861618 1.06631764810580e-05 0.158955971803131 8.44054260165812 15.1469463389694 0.652504518810974 0.0440724920518451
AT3G01650_at 5.56671337699288 5.65474727063781 6.26047675569415 6.38753701659796 7.07924419160137 7.10618017747308 5.78613902269433 5.2065281834316 5.67319099365082 5.22161561722897 5.78364011461464 5.54724243167663 6.15340475958025 6.01772073406973 5.51239450690936 5.70600144515218 6.11401629156647 5.99392353058047 5.42225271335243 0.205760156284363 0.180525390020504 0.185457076940496 0.178771939795029 0.181388983701848 0.215010849005879 0.191658315957836 0.182524815290564 0.184701534575524 0.180942544387673 0.184154429247761 0.180414408068286 0.184929167953341 0.183973280554527 0.196172162241381 0.182586576144126 0.193658775503077 0.184117847850196 0.178771939795029 3 3 + 244068 245015 244592.273 242018 245275 + gene protein_coding_gene FALSE TRUE AT3G01650.1 copine-related similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to RING-finger protein [Capsicum annuum] (GB:AAX20031.1); contains InterPro domain Copine; (InterPro:IPR010734); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.784675386963564 7.64468507377315 1.06984728799737e-05 0.159471436748888 8.43816680800626 11.7772271251468 0.784675386963564 0.103914757603527
AT1G76800_at 6.07407991287633 6.59178791531029 7.25200631798565 7.2246959423245 5.89277585312128 5.46607202634528 8.95548527889842 8.7643701701895 6.7939550424525 6.40646200616467 6.78490051221234 6.12579770642341 5.82787889389205 5.93507746806238 5.0822532967076 5.44407182661813 5.50136281698588 7.3777612827718 6.42397487754711 0.247940772283799 0.247940772283799 0.247940772283799 0.247940772283799 0.250291218066639 0.259706875204294 0.26699131903784 0.264489855403823 0.261825329020603 0.247940772283799 0.248753918578449 0.251888026813711 0.252376316320428 0.251924119653638 0.254217759055288 0.247940772283799 0.258116240560059 0.255039412799997 0.249130307568097 1 1 + 28834299 28834778 28834544 28834202 28835171 + gene protein_coding_gene FALSE TRUE AT1G76800.1 nodulin, putative similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43660.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) -0.83455964215168 -7.64025962311124 1.07562553429884e-05 0.160321985887243 8.43429338544843 13.3033351525550 -0.83455964215168 0.120812554848859
AT2G31170_at 4.84831989511489 4.37954702990083 3.62625228032553 3.13050086551965 3.61326233328409 3.51613786174646 5.33084700558806 4.80180327684195 4.466944892603 5.24659788416845 3.7523290228524 4.53831939676874 4.19592107983789 3.92387466965968 5.7974278938848 4.68008121452527 4.28942395455632 3.9182564582344 4.92780806285909 0.226485164380369 0.226138050828871 0.226567620136108 0.221694408705685 0.221694408705685 0.221750522716719 0.226089613423507 0.232557041927955 0.237670344803625 0.224763237449565 0.226265240485679 0.227987277317528 0.225915218793317 0.233900985051788 0.243511032528499 0.222024697945781 0.235626631454793 0.222068085907527 0.224589014367005 2 2 - 13289636 13290441 13290019 13289432 13292743 - gene protein_coding_gene FALSE TRUE AT2G31170.1|AT2G31170.2 tRNA synthetase class I (C) family protein similar to tRNA synthetase class I (C) family protein [Arabidopsis thaliana] (TAIR:AT5G38830.1); similar to Os09g0556500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063899.1); similar to Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93925.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080)|similar to tRNA synthetase class I (C) family protein [Arabidopsis thaliana] (TAIR:AT5G38830.1); similar to Os09g0556500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063899.1); similar to Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93924.1); similar to Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93925.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080) -0.931043517614704 -7.63350513365056 1.08450964951056e-05 0.161635318163053 8.42837605735968 8.78953606412357 -0.931043517614704 0.150352327406458
AT1G65350_at 3.8776647489757 3.6815600574498 4.62382271676664 4.37021610098108 4.37231232049561 4.45386940240791 3.76259029982025 3.74308091144238 4.20503658276284 4.14550226106533 4.73511676078743 4.49934497977366 4.62753735534796 4.74328619255632 4.47208322733952 4.55453934052658 4.70099971798561 4.86988290519261 3.62851252511379 0.251852710010323 0.234927706671454 0.238022681625265 0.237231335631406 0.251258110009641 0.238065648437881 0.261496541863275 0.266182271600546 0.274907318143404 0.259800553675555 0.237016232251463 0.234927706671454 0.235268929106128 0.253003207858106 0.240853114081442 0.234927706671454 0.247839866482889 0.235599980982691 0.26228094383102 1 1 - 24280093 24280531 24280318.9 24280054 24280938 - gene protein_coding_gene FALSE TRUE AT1G65350.1 UBQ13 (ubiquitin 13) polyubiquitin gene,Columbia ecotype revealed that the gene contained a 3.9-kb insertion in the coding region from mitochondrial DNA. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ14 (ubiquitin 14), protein binding [Arabidopsis thaliana] (TAIR:AT4G02890.3); similar to hexaubiquitin protein [Helianthus annuus] (GB:CAA40324.1); similar to polyubiquitin OUB2 [Olea europaea] (GB:AAL27564.1); similar to polyubiquitin [Pinus sylvestris] (GB:CAA66667.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.673081408849419 7.63340977619466 1.08463563638797e-05 0.161643248890899 8.42829247200123 8.4323225362521 0.673081408849419 0.0573449836088119
AT1G70140_at 3.97298217797551 4.22332621582684 4.80125620921897 4.774759119783 4.54793269263436 5.154165725304 3.13156223191275 3.32060461055156 3.07535709313609 3.66803153146527 4.07556292787418 3.53520313516931 3.41000923713271 3.70012065600376 3.54408391596906 3.9613442585022 4.10411085585131 3.72589348492263 3.04793656408471 0.163489158644167 0.158684004412984 0.166303013635052 0.157800204369827 0.157070080721082 0.166374184107593 0.165140954490308 0.160706021601606 0.173983205448000 0.156872720409051 0.163016247335065 0.158164596128603 0.160050716027858 0.165929842864508 0.166596600213901 0.158346678483997 0.163917671409223 0.160592317258292 0.156872720409051 1 1 - 26416358 26416896 26416619.455 26416351 26418893 - gene protein_coding_gene FALSE TRUE AT1G70140.1 ATFH8 (FORMIN 8); actin binding / actin filament binding / profilin binding Encodes a group I formin. Binds to F-actin barbed ends. Has severing actin filaments activity. Binds profilin. Involved in the initiation and tip growth of root hairs through regulation of actin cytoskeleton. similar to ATFH4/FH4 (FORMIN HOMOLOGUE 4), actin binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G24150.1); similar to Pyridoxal-dependent decarboxylase; Actin-binding FH2 [Medicago truncatula] (GB:ABE93173.1); similar to Os02g0739100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048066.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) 0.825337811850602 7.62918169072612 1.09023767932776e-05 0.162467218973422 8.42458504724897 7.75123168381262 0.825337811850602 0.118214164478008
AT3G58700_at 8.05059240844873 8.3198331214959 7.08715656833429 7.02780744707406 7.03327726799766 7.2686432541322 7.67271442508176 8.03900789224065 7.04928656894719 6.89793228836674 6.59203599023202 6.96322863774856 6.2526603505896 6.09959188676358 6.92264336942576 5.93528168994663 6.3963059637402 6.02589159925836 6.95582651257945 0.199022773825745 0.192733635310340 0.184669609690158 0.182507364254440 0.182697667672912 0.183301663130408 0.184963039686815 0.19059471433573 0.202562931652694 0.182604296305560 0.187899247236457 0.178476517258134 0.178476517258134 0.198955384971956 0.182670064909796 0.180700907585214 0.195810973456779 0.187061526997037 0.182961766892501 3 0|3 /|+ 21723338 21723682 21723551.222 21722540 21723932 + gene protein_coding_gene FALSE TRUE AT3G58700.1 60S ribosomal protein L11 (RPL11B) Identical to 60S ribosomal protein L11-2 (L16) (RPL11D) [Arabidopsis Thaliana] (GB:P42794;GB:P42796;GB:Q42195;GB:Q8LD47;GB:Q9LXT1); Identical to 60S ribosomal protein L11-1 (L16A) (RPL11A) [Arabidopsis Thaliana] (GB:P42795;GB:Q9SJI2); similar to 60S ribosomal protein L11 (RPL11D) [Arabidopsis thaliana] (TAIR:AT5G45775.2); similar to RPL16A (ribosomal protein large subunit 16A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G42740.1); similar to RPL16B (ribosomal protein L16B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G18730.1); similar to ribosomal protein L11-like protein [Solanum tuberosum] (GB:ABB29943.1); similar to ribosomal protein RL5 [Cicer arietinum] (GB:CAD56220.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132); contains InterPro domain Mitochondrial ribosomal protein L5; (InterPro:IPR003236) -0.742771340716789 -7.6247240992173 1.09617755877406e-05 0.163341418032922 8.42067361087073 14.2454474110644 -0.742771340716789 0.0891829333330977
AT1G60590_at 2.13819420630636 2.32822014086333 1.12369346420666 1.55900874448437 1.02654493702183 1.44866285697096 3.2021220632109 3.76890926646983 2.55564898731033 3.5377628216455 2.96216760057818 4.46882790426445 2.17854675168595 1.96872699268027 4.34885528694002 2.98007906230378 2.22123762125286 2.40843531137690 3.53845076645082 0.210293699947901 0.216706827412519 0.21721018008674 0.218594210211053 0.216599434477345 0.21622595169116 0.211864821990598 0.245048849620330 0.211250527149505 0.218308753930317 0.21301958060949 0.223609788816025 0.214073156821646 0.221246598855927 0.227033548466077 0.210293699947901 0.218512721723262 0.216729486646240 0.215025817612108 1 1 - 22318150 22318727 22318379 22317835 22320635 - gene protein_coding_gene FALSE TRUE AT1G60590.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G10640.1); similar to Os01g0636500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043666.1); similar to putative polygalacturonase [Oryza sativa (japonica cultivar-group)] (GB:AAT39158.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.919197605312618 -7.62087643448486 1.10133271173769e-05 0.164098574048916 8.41729508567753 5.15078467236887 -0.919197605312618 0.147354854375039
AT1G73480_at 10.5084625397766 10.494782976513 11.3022669924214 11.2445931213509 11.5089259903148 11.2223405055235 11.0209699335841 10.9080279078264 9.17239345379903 9.8903413457119 9.65032582461549 9.96180039331201 10.9444513380009 10.3095335985434 9.4933248215441 10.2393213293171 11.3315578641752 10.4129064006833 9.5768568695196 0.0858431299522428 0.0826496409675333 0.0863770075163984 0.0826496409675333 0.0830641040707776 0.0880787568652055 0.085524133478441 0.0833186407954544 0.0931411427708632 0.0855159255237104 0.0866605327392261 0.0855056106483737 0.0837108556733182 0.083685374033088 0.0887387621825087 0.0826496409675333 0.085552359628348 0.088428764100199 0.0867398145468071 1 1|0 +|/ 27635404 27636069 27635823.7 27632600 27636467 + gene protein_coding_gene FALSE TRUE AT1G73480.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G18360.1); similar to Os09g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063095.1); similar to Os03g0719400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051094.1); similar to putative monoglyceride lipase [Oryza sativa (japonica cultivar-group)] (GB:BAD26447.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.66642147645404 7.61965545081225 1.10297405278565e-05 0.164332104124534 8.41622253166379 20.9460128722226 0.66642147645404 0.0542852777963114
AT3G19580_at 6.26199750364535 6.57125697484595 8.09016580969703 7.98860649179462 7.56020446980418 7.40618456354954 5.9347492868567 6.25147556356455 5.99182135158581 5.78060548516844 5.38501389683652 4.62531096533523 5.99149981857949 6.02301231674652 4.53863741307986 6.54263017614163 7.37479483070952 5.69485744479485 5.70314257069012 0.236419107823071 0.235906274522574 0.243208499336126 0.248933564000059 0.24654352773803 0.249007116784913 0.23749145514076 0.236832237657154 0.250588333001189 0.235906274522574 0.23950482106351 0.243083415755174 0.238299955937815 0.241139511122917 0.250233588464234 0.235906274522574 0.239184429103585 0.242163207019101 0.243594956709867 3 3 - 6803335 6803829 6803580.727 6803172 6804239 - gene protein_coding_gene FALSE TRUE AT3G19580.1 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. similar to STZ (SALT TOLERANCE ZINC FINGER), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G27730.1); similar to zinc-finger protein 1 [Datisca glomerata] (GB:AAD26942.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.726600153389852 7.61762595381545 1.10570808966402e-05 0.164728391198146 8.41443927948015 12.8066597880994 0.726600153389852 0.082992907057462
AT3G60180_at 8.28512941463173 8.02733730129608 9.01068997844138 9.12974984270124 9.73591101456904 9.34027536731198 8.15356095409327 7.15765973882082 7.19924802452204 5.74536357132971 7.26883451684803 7.03781157605847 7.06256911983331 7.0480449174969 7.19917138000971 7.71241836968107 8.32875104698544 7.57809194274347 6.98660635562244 0.327086442381612 0.327086442381612 0.328816453789349 0.327086442381612 0.336165239099922 0.344274731192921 0.327086442381612 0.335138521541511 0.348050077410497 0.370846820120137 0.337959115499293 0.327086442381612 0.338624865617228 0.334116610716395 0.327086442381612 0.327086442381612 0.327086442381612 0.327086442381612 0.342430079161315 3 3|0 -|/ 22253940 22254840 22254481.333 22253479 22255030 - gene protein_coding_gene FALSE TRUE AT3G60180.1|AT3G60180.2 uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative similar to uridylate kinase [Arabidopsis thaliana] (TAIR:AT5G26667.3); similar to Os02g0778400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048295.1); similar to UMP/CMP kinase b [Oryza sativa] (GB:AAF23372.1); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850); contains InterPro domain UMP-CMP kinase; (InterPro:IPR006266) 1.07947849504721 7.61479794634045 1.10953001356434e-05 0.165286686120679 8.41195341865892 15.6291396644157 1.07947849504721 0.191847218678115
AT4G23620_at 4.8079486469654 4.91836444991395 4.62517609982635 4.30180355552618 3.91242109523087 3.98799160504294 5.31853980470805 5.66827253416975 3.98519233794106 4.55349716662408 3.58242935757013 3.33492745866385 3.49170407367507 3.50915861561048 4.26344931636361 3.74033270892496 4.19461244140481 3.99663859168896 4.23529907703257 0.241632421411322 0.240208399137981 0.242897156527172 0.242638754394593 0.239774313990336 0.250691911640665 0.250762846501252 0.252990284649783 0.245751118889915 0.241077254517427 0.239774313990336 0.245494814600272 0.257428623289529 0.241311362350101 0.248562026469284 0.239774313990336 0.244784147418878 0.240560635991908 0.245969007784074 4 4|0 -|/ 12315065 12316425 12315812.889 12314593 12316725 - gene protein_coding_gene FALSE TRUE AT4G23620.1 50S ribosomal protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66860.1); similar to Ribosomal protein L25 [Medicago truncatula] (GB:ABD28532.1); contains InterPro domain Ribosomal protein L25-like; (InterPro:IPR011035); contains InterPro domain Ribosomal protein L25; (InterPro:IPR001021) -0.732636446705434 -7.61307930156742 1.1118596301507e-05 0.165622610507248 8.41044214443692 8.70364110609975 -0.732636446705434 0.0856201544175783
AT1G20620_at 13.7460789665265 13.7611981961409 13.8574018857277 13.7354431279121 13.7918705370475 13.9342571921836 12.6049887325642 12.7999078464698 12.2753957428568 12.6337283706905 13.1685164672101 13.0957759329037 13.2750233394146 13.0470620402571 13.2424378879394 12.8733499120154 13.2590017256948 13.8238830485225 12.6441199484756 0.0705788714452929 0.0689198164475847 0.0711027487752146 0.071900826063739 0.0695047629519536 0.070207041410952 0.0701421036062431 0.0709463571275043 0.0759766126634502 0.0707510954677233 0.0698083971479292 0.0682027675983753 0.068958711402125 0.0740557345831089 0.0690341119653025 0.0688572571479971 0.0704483534243711 0.067566273431262 0.0700960276826182 1 1|0 +|/ 7145311 7145997 7145499.8 7143057 7146530 + gene protein_coding_gene FALSE TRUE AT1G20620.1|AT1G20620.2|AT1G20620.4|AT1G20620.5 CAT3 (CATALASE 3); catalase Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. Identical to Catalase-3 (EC 1.11.1.6) (CAT3) [Arabidopsis Thaliana] (GB:Q42547;GB:Q93VY9;GB:Q9LDS9); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT2 (CATALASE 2), catalase [Arabidopsis thaliana] (TAIR:AT4G35090.1); similar to catalase [Brassica napus] (GB:AAB53101.2); similar to catalase 3 [Raphanus sativus] (GB:AAD30292.1); similar to catalase 2 [Raphanus sativus] (GB:AAD30291.2); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226)|Identical to Catalase-3 (EC 1.11.1.6) (CAT3) [Arabidopsis Thaliana] (GB:Q42547;GB:Q93VY9;GB:Q9LDS9); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT2 (CATALASE 2), catalase [Arabidopsis thaliana] (TAIR:AT4G35090.2); similar to catalase [Brassica napus] (GB:AAB53101.2); similar to catalase 3 [Raphanus sativus] (GB:AAD30292.1); similar to catalase 2 [Raphanus sativus] (GB:AAD30291.2); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226) 0.653541511931385 7.61073332267386 1.11504809948775e-05 0.166086414418701 8.40837854646643 26.399332968031 0.653541511931385 0.0468751229927351
AT1G06550_at 5.21882675263773 5.19879656566943 4.13406393479087 3.85350557429387 4.62761121235866 4.66844082594622 6.18005788760478 6.02159022974051 5.04130844862329 5.7501982543164 5.38819234833516 6.1935159154144 5.30356959700455 5.74612931773708 5.66876739883603 6.04887173589846 4.86600274683011 5.16525347137165 5.86306424201071 0.196278950915689 0.198922250320723 0.207698606620086 0.209045584442365 0.195879651222893 0.205529735566663 0.210172297869432 0.211812358950976 0.211913906057457 0.199436234432487 0.198922322575991 0.201437889792968 0.195692297278279 0.199120862408101 0.208690057773355 0.197799889444992 0.212386826800811 0.203665721271268 0.197055196540680 1 1|0 -|/ 2004033 2005385 2004765.778 2003626 2007189 - gene protein_coding_gene FALSE TRUE AT1G06550.1 enoyl-CoA hydratase/isomerase family protein similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to Os01g0752200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044263.1); similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97000.2); similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96998.2); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) -0.66894915197704 -7.60764712517649 1.11925761630985e-05 0.166702229373189 8.40566262670336 10.5373923552529 -0.66894915197704 0.0563141408993399
AT3G04010_at 4.82329274369836 5.10242096115235 5.12034881269838 5.22807396873956 5.42981151529512 4.92545289847729 3.38271274651149 3.46733516579697 2.49581203698978 3.25927377144092 3.22270481714743 2.88229207198465 3.90194559044679 3.50299298741655 2.39479184360309 3.58738450553033 3.42795775014428 3.19458101999521 2.32673813154935 0.323035168364893 0.323653972334820 0.321274659220223 0.321635349891533 0.329276041141093 0.327630358888208 0.301332233536265 0.309738761238166 0.328390913913628 0.315423311791553 0.312893818799672 0.301675508731270 0.312607189278868 0.312534201162003 0.308693995401273 0.306617249373859 0.316777513601101 0.309829559177358 0.312935856165802 3 3 - 1036892 1037453 1037136.909 1036848 1039489 - gene protein_coding_gene FALSE TRUE AT3G04010.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G18220.1); similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G64760.2); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G19440.1); similar to beta-1,3-glucanase, acidic [Coffea arabica] (GB:AAQ90287.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.776185702234826 7.59984086983993 1.12998176131417e-05 0.16828818371252 8.39878685530396 7.6640674198513 0.776185702234826 0.102534828319575
AT4G14800_at 9.69266594549743 9.55426770730421 10.2249405248724 10.1942591284127 9.92375286188877 9.7480860930201 9.28226594026342 9.22230620887232 8.89338314815971 8.78403362298196 9.35979148046744 9.29098425097168 9.17788354462709 9.32279364525171 9.6407932707846 9.16191956546491 9.34047337760268 9.47043217749373 8.2560776923425 0.0830466113533956 0.0821630097017772 0.0831891235176729 0.0806772146754013 0.0844283181666352 0.084363261614016 0.0850506317511237 0.0852110546996373 0.101629506242797 0.0907695926368268 0.081962926207962 0.0804427316932171 0.0836563223688426 0.0859438211630013 0.081618686516541 0.0804427316932171 0.08586930458977 0.0843947021907526 0.101232047887888 4 4 + 8500436 8501955 8501163.364 8500282 8502224 + gene protein_coding_gene FALSE TRUE AT4G14800.1 PBD2 (20S PROTEASOME BETA SUBUNIT 2); peptidase Encodes 20S proteasome beta subunit PBD2 (PBD2). Identical to Proteasome subunit beta type 2-B (EC 3.4.25.1) (Proteasome subunit beta type 4) (20S proteasome beta subunit D-2) (Proteasome component GA) (PBD2) [Arabidopsis Thaliana] (GB:O24633); similar to PBD1 (PROTEASOME SUBUNIT PRGB), peptidase [Arabidopsis thaliana] (TAIR:AT3G22630.1); similar to 20S proteasome beta 4 subunit [Triticum aestivum] (GB:AAU82106.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.643009480576207 7.5955582511125 1.13591211958607e-05 0.169160032848758 8.39501099592053 18.7253840855553 0.643009480576207 0.0404183249299516
AT1G80110_at 5.8065075379373 5.37698083278551 5.95725580259869 5.95268689438316 6.50996363787396 6.5267456700953 4.77234733069981 5.30603660257915 3.44176401036065 3.07769733581252 3.35631470762704 3.45213559518882 4.17915986639823 3.63107514892502 3.67800499254258 3.73028575890359 4.65296119474975 4.30989154320408 2.92828470387772 0.264093185036185 0.263336947488353 0.267286997113789 0.264547721468014 0.265007516719833 0.278257349829100 0.261613108443331 0.271312788680857 0.26917453904256 0.269389963796616 0.265807657096541 0.263593689797407 0.261613108443331 0.276422002584175 0.272787843785631 0.261906347218627 0.261613108443331 0.261613108443331 0.267272576759859 1 1|0 +|/ 30141120 30141490 30141364.2 30140274 30141848 + gene protein_coding_gene FALSE TRUE AT1G80110.1 ATPP2-B11 similar to ATPP2-B10 (Phloem protein 2-B10) [Arabidopsis thaliana] (TAIR:AT2G02360.1); similar to Os02g0812600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048480.1); similar to F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22385.1) 0.822837421414715 7.59539400082841 1.13614023135583e-05 0.169182641851196 8.39486612878945 9.28755418076545 0.822837421414715 0.118592322072896
AT4G15090_at 5.15296036805216 5.25179535945094 5.4381260603012 5.31472798465211 6.46811008756551 6.39506345314745 5.21814419808967 5.23638173846269 5.14511940136685 4.73439635100903 5.29963512984821 5.62556195774203 5.7618545493447 5.19631341517826 5.62821086205781 5.69755198270541 5.41591384606611 5.26001895810477 4.85893395741574 0.231472520334614 0.225651120781345 0.225967920442462 0.229550060991453 0.230271523722639 0.229795746436117 0.231632978688288 0.230452642970524 0.230329824336075 0.226087399888916 0.226702527619465 0.230683486011105 0.225651120781345 0.232129998142082 0.231643448046974 0.226345598620975 0.225651120781345 0.228560518463426 0.228107457882467 4 4|0 +|/ 8616755 8617827 8617479.1 8614063 8618142 + gene protein_coding_gene FALSE TRUE AT4G15090.1 FAR1 (FAR-RED IMPAIRED RESPONSE 1); zinc ion binding Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3. similar to FHY3 (far-red elongated hypocotyls 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G22170.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.631001249051536 7.59433899698514 1.13760660308562e-05 0.169389623199449 8.393935533369 10.7586382349959 0.631001249051536 0.0303037737306224
AT3G51450_at 7.33106315228406 7.16941501554664 7.65412133987069 7.43563492938727 3.25303953930002 3.75913276960755 2.53762477157688 2.60384082126382 3.09045264403376 3.48419099841301 3.98984555678655 4.23246953000173 3.46498411075783 4.70209037247075 3.70025223702357 5.10206892137957 4.03713030023823 4.23753095429509 3.20787541599696 0.231905262215988 0.225067726124119 0.224815425501205 0.228039040004400 0.221833347240427 0.230284398861054 0.224945705008470 0.227385257435725 0.226590653495882 0.231086823574749 0.221833347240427 0.221833347240427 0.225402359885071 0.224483018927402 0.221833347240427 0.237272644436929 0.232626939621196 0.234128256496646 0.221833347240427 3 3|0 +|/ 19102633 19103329 19103074.3 19101947 19103488 + gene protein_coding_gene FALSE TRUE AT3G51450.1 strictosidine synthase family protein similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.768726508047394 7.59392447482345 1.13818331343439e-05 0.169464113537246 8.39356984881536 8.94005213436315 0.768726508047394 0.100070100153442
AT2G04240_at 8.80013507999096 9.19400971812292 9.27876010694873 9.4274046829584 10.3003544667537 10.0586610745666 8.63853183164852 8.75729669945933 8.52130345849055 8.37125587652789 8.91658385135835 8.57779538069372 9.2854411972143 8.89576966710671 8.67386532016753 9.11125698634722 9.17875670991951 8.80186560403578 8.25685583582494 0.125745842334114 0.126498719829586 0.134025201738121 0.127750469002139 0.129940120161278 0.125418123443824 0.128835638871358 0.130269018505046 0.136441842857418 0.130359496311120 0.124489004440541 0.12681252071341 0.125801602194197 0.133361769341008 0.129266889588996 0.124489004440541 0.131490776733628 0.140262790001448 0.139877620749790 2 2 - 1461827 1462267 1462049.364 1461627 1462934 - gene protein_coding_gene FALSE TRUE AT2G04240.1|AT2G04240.2 XERICO; protein binding / zinc ion binding Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. similar to BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G61460.1); similar to putative RING zinc finger protein-like protein [Thellun (GB:AAM19707.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.732915099912843 7.59358530974474 1.13865541618386e-05 0.169523018361452 8.39327062465443 17.9635468224994 0.732915099912843 0.0864846166961076
AT1G76970_at 5.90150339342926 5.5437267296246 6.39930135483327 6.32529835836235 5.11062982151987 4.86110280148305 2.91497365378766 2.48202074070133 3.52900395761202 3.32013491729207 3.14226901990297 3.99691237799968 2.88984293703789 3.89489789950140 3.43922126136785 3.68659918287886 3.04965878276286 3.2837485541466 3.08214005226599 0.332691450839213 0.313673035716070 0.347116496692551 0.333982300689659 0.309298522339912 0.319959034151858 0.309041841985605 0.324143717832919 0.311974150119469 0.307504367405345 0.308082262487926 0.307504367405345 0.307504367405345 0.315422577039043 0.310364627678976 0.307765203068074 0.310101567822662 0.308711138432034 0.310783377393795 1 1|0 -|/ 28927766 28928373 28928068.8 28927560 28930298 - gene protein_coding_gene FALSE TRUE AT1G76970.1 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21380.1); similar to VHS and GAT domain protein [Glycine max] (GB:ABB90835.1); similar to Os11g0199700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067438.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.787997198778499 7.58788011361753 1.14662847317996e-05 0.170698580802300 8.38823480728666 8.3089796372209 0.787997198778499 0.107125246113523
AT3G22400_at 3.50349245571367 3.12490704142936 4.22540824058199 3.9353452517821 2.63780221137035 2.95230575707674 2.95958511932072 2.97659725136961 3.16010128330177 3.0553391113586 4.59774462782016 4.62237279013388 4.48424980848266 3.96217384224468 4.80731377474899 4.73049811948491 4.40147392561093 4.61664157781088 3.66882442700699 0.200223485802603 0.202268881054418 0.207025992110483 0.200434737795996 0.198690246636042 0.204861089218673 0.204029263402537 0.20325002299264 0.195789455732864 0.207540023831729 0.198555766356271 0.205877993413877 0.196524491375012 0.210776490876285 0.206236635036507 0.208789169033514 0.203880458447979 0.196033721797661 0.196112624142506 3 3 + 7930578 7931144 7930768.727 7926886 7931358 + gene protein_coding_gene FALSE TRUE AT3G22400.1 lipoxygenase, putative similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX1 (Lipoxygenase 1), lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G55020.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to lipoxygenase [Fragaria x ananassa] (GB:CAE17327.1); similar to lipoxygenase [Corylus avellana] (GB:CAD10740.1); similar to lipoxygenase-9 [Cucumis sativus] (GB:CAB83038.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) 0.764811757990403 7.58676341785473 1.14819608574756e-05 0.170920469324382 8.38724858321694 7.20071216550453 0.764811757990403 0.0989087790251914
AT1G80640_at 5.5035507261817 6.3105237790462 3.77773025352957 4.23681486525022 5.38872586495528 5.61470092153567 5.78141394102469 6.40614534564723 7.27011528724129 6.9308047335148 6.36599843708433 6.85891996662461 5.55399597669741 5.5675814289689 6.93342042785612 5.80729256793357 5.33342671512285 5.51660904888307 6.61913464211891 0.273463383250279 0.274107798787173 0.285909003767859 0.279250847795006 0.273466705241768 0.271779089241790 0.280414142930820 0.269557476320303 0.269557476320303 0.269557476320303 0.269766811862633 0.269557476320303 0.274310796922518 0.274781133914760 0.272171474008602 0.270919739127304 0.280013224589102 0.269557476320303 0.269867878006673 1 1|0 +|/ 30318245 30319057 30318654.875 30316558 30319267 + gene protein_coding_gene FALSE TRUE AT1G80640.1|AT1G80640.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25220.1); similar to putative protein kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD25150.1); similar to Os05g0319700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055185.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25220.1); similar to Theoretical protein with similarity to GenBank Accession Number L22302 serine/threonine protein kinase (GB:AAA98917.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -1.09688906073462 -7.58471224736658 1.15108152369199e-05 0.171338484801553 8.38543659836495 11.8435376081987 -1.09688906073462 0.197564334149932
AT2G18090_at 7.18987507369271 7.19035005199628 7.25108220264052 6.98996758684272 7.33344536455928 7.73953533026528 6.14459525954847 6.11675083404094 5.90323858784835 5.6973786125611 6.79658941073985 6.69726133523314 6.34504929747163 6.25195451879359 6.42920570336373 7.0377316115233 7.36795495659926 6.29780948306959 6.0165311258242 0.223098313782589 0.212122837674983 0.213092065539029 0.216219484608761 0.212976568959906 0.215420060034801 0.216470195253931 0.218367471234877 0.22513655163664 0.229164447883316 0.227519564505593 0.216564541453036 0.218894476861855 0.217295834836547 0.218319059185759 0.212378167484956 0.212859529848146 0.218482940577875 0.223137565395829 2 2 + 7873806 7874326 7874086.727 7871396 7874848 + gene protein_coding_gene FALSE TRUE AT2G18090.1 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51120.1); similar to Plus-3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54582.2); similar to Os10g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065041.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain GYF; (InterPro:IPR003169); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) 0.724338290222696 7.57618489871496 1.16316112768332e-05 0.173124902244385 8.37789712369262 13.2571138704535 0.724338290222696 0.0836886056898186
AT1G70550_at 2.8976201219537 2.81727220331868 2.01668731213496 1.9787969716662 2.63954500724291 2.69101447750078 4.25074947635972 3.89567229194498 4.10916481022063 3.75712415028657 3.82463099778429 4.1289224731043 3.2374409886506 4.22397511225606 3.8181309064023 3.78585858173351 3.34428916011404 3.65357667357872 4.0704784868691 0.205510868415615 0.210257690171553 0.210895179104432 0.216182283349247 0.206662414860128 0.208960753497185 0.201808848688397 0.208712606901747 0.211259903116699 0.211677138157304 0.203511256559244 0.203203696252658 0.203712423506952 0.210470864561112 0.206836107431313 0.204013218452044 0.21773613050573 0.207959186813556 0.206905733928085 1 1|0 +|/ 26602598 26603408 26603075.2 26600815 26603882 + gene protein_coding_gene FALSE TRUE AT1G70550.1|AT1G70550.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10750.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23340.2); similar to putative carboxyl-terminal proteinase [Gossypium hirsutum] (GB:AAK84952.2); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.680318476006925 -7.57305380459363 1.16763073848323e-05 0.173778482808459 8.37512612977208 6.76393252984611 -0.680318476006925 0.0639648007185281
AT3G07080_at 5.64117200881147 6.0402519907842 5.46477449159187 5.27319013764076 6.60610392642052 6.22184214664612 4.50317648762513 4.7205807953638 4.44222342803175 3.68379971994799 4.51954336968686 5.0310998562196 4.80967689475357 5.40814356854494 5.04484691082087 5.32963471864273 4.95558614058287 4.7651923366327 4.08349507318861 0.268812332635959 0.268010394699053 0.268272525044293 0.262139601165929 0.263853345556885 0.283390678710929 0.262838715909441 0.260573250477165 0.269727536022303 0.263903757236829 0.263429650771349 0.261858106112026 0.268386937701429 0.270370557380449 0.269368110144369 0.26226038664842 0.283509723961212 0.279890402148668 0.267894755041261 3 3 + 2242216 2242885 2242522.636 2241042 2243130 + gene protein_coding_gene FALSE TRUE AT3G07080.1 membrane protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32140.1); similar to Os06g0681700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058380.1); similar to hypothetical protein Tb927.8.1460 [Trypanosoma brucei TREU927] (GB:XP_825884.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.789154211179033 7.56933662244825 1.17296100069956e-05 0.174560056124109 8.3718346170603 10.0852889388813 0.789154211179033 0.108196004729658
AT2G02780_at 3.25046735499314 3.06774364610774 2.4423541739967 2.01226414438503 2.51091810460848 2.95344627661260 4.45100362537868 4.86310807684068 4.35261709421987 4.90471156677259 4.69372912022134 4.56861111187983 4.68008322609331 4.79006522690269 4.56702432638551 4.57477856520803 3.44276550199718 4.83368079825722 5.18568749983629 0.238712277947698 0.242814824168571 0.251271721162238 0.243381257863750 0.238712277947698 0.243640569632214 0.249063243154121 0.246171731283985 0.264622508996312 0.245058584413223 0.238712277947698 0.241514965910343 0.241357505525471 0.238712277947698 0.238712277947698 0.238991205796427 0.238712277947698 0.246121126955697 0.251365998811786 2 2|0 -|/ 782030 782853 782386.3 781846 784645 - gene protein_coding_gene FALSE TRUE AT2G02780.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G14390.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD32906.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.861915743293733 -7.56074695580664 1.18537862907187e-05 0.176396193792185 8.36422095959022 7.86050365281257 -0.861915743293733 0.132251205756767
AT1G24170_at 5.00435290153153 4.90934717517133 4.17482929909236 3.92427061857730 4.26501548344606 4.36363758217983 6.40119218591676 6.13443505014444 6.94488466570142 6.42796899947224 7.9295848551888 7.3345149394235 6.84833591190359 6.62373736552287 6.86121031760415 6.16210968907992 5.1251704292996 6.7666528641716 6.57356942883964 0.216225248206826 0.209559807451059 0.219967249590309 0.220070305110892 0.230034009982599 0.241975856434275 0.209406717518439 0.211167506878424 0.210183962313959 0.213045579500938 0.218070852700054 0.210681016678180 0.214353663595712 0.221852999393498 0.210441505223066 0.208617428562388 0.216609736501543 0.216293117177995 0.214050686836228 1 1 - 8557461 8557962 8557697.545 8557205 8558821 - gene protein_coding_gene FALSE TRUE AT1G24170.1 GATL8/LGT9 (Galacturonosyltransferase-like 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL9/LGT8 (Galacturonosyltransferase-like 9), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G70090.1); similar to Avr9/Cf-9 rapidly elicited protein 231 [Nicotiana tabacum] (GB:AAG43554.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.686393366923655 -7.55827365796593 1.18898032805179e-05 0.176920272814106 8.36202671672808 11.5747461592718 -0.686393366923655 0.0676224087817629
AT4G15510_at 5.94604065844926 6.06136633095649 4.76116067237611 4.69140146973713 5.54777956009789 5.12592791933566 7.1513022705145 6.92477837761416 6.21140836634297 6.26552227858842 6.35695838019962 7.0388564198496 5.89607917172203 5.9999746216602 6.89199792564466 6.22579600999426 5.80991821694220 6.03649177546835 6.27089014300522 0.207579501982061 0.209547728096727 0.226129776050432 0.227374422102278 0.206204479965058 0.215441168829294 0.208868487968785 0.206204479965058 0.216719298572747 0.208332215894029 0.210920856635692 0.21336692655459 0.211065273555547 0.228941450451561 0.206204479965058 0.206235337310549 0.206204479965058 0.208615336778988 0.212379213420239 4 4 + 8861386 8862392 8861680.727 8860614 8862663 + gene protein_coding_gene FALSE TRUE AT4G15510.1|AT4G15510.2|AT4G15510.3 photosystem II reaction center PsbP family protein|calcium ion binding Identical to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O23403); similar to CLA1 (CLOROPLASTOS ALTERADOS 1) [Arabidopsis thaliana] (TAIR:AT4G15560.1); similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98971.2); similar to Os12g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067041.1); similar to Os07g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059362.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683)|similar to CLA1 (CLOROPLASTOS ALTERADOS 1) [Arabidopsis thaliana] (TAIR:AT4G15560.1); similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98971.2); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683)|Identical to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O23403); similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98971.2); similar to Os12g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067041.1); similar to Os07g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059362.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.72828451739533 -7.55595174804051 1.19237229221531e-05 0.177413073358717 8.35996597656365 12.0418609879671 -0.72828451739533 0.0860828654877967
AT3G57950_at 1.45227966449735 1.82871608483453 3.25489620598536 3.09225096540567 2.00930131825956 1.96603012748684 0.459144865403979 0.547702676014987 0.79334458088818 0.388137351831220 0.307884674346438 0.669951932545037 0.359136166269191 0.879926722878124 0.357737706020323 0.533455043391621 0.429699781817594 0.370274323267293 0.625737461155855 0.232509251383027 0.231958535420235 0.252038023576254 0.249302531815916 0.237674281976905 0.233954206826920 0.226907418523962 0.227083130510625 0.231470655155968 0.234857509529807 0.234109818782956 0.227586257884016 0.234237191776659 0.225634345086558 0.229380901724412 0.228575095166048 0.229879148352514 0.238535018161691 0.230115707253621 3 3 + 21471461 21471870 21471650.909 21471400 21471945 + gene protein_coding_gene FALSE TRUE AT3G57950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42180.1); similar to Os09g0279200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062757.1) 0.697380330394258 7.55335464785156 1.19617861276466e-05 0.177967454007126 8.35766007619914 2.37174761770705 0.697380330394258 0.0729857371915257
AT2G22810_at 3.30450000513143 3.29236011418603 3.44768142126122 3.38760061219774 3.67481478192418 3.64751171110238 3.83692421398661 3.97571228684748 5.30809276284781 5.67617765213533 4.46307693953001 4.70700489755768 3.81065829668019 3.77363231222864 6.81045430155881 3.99961744937311 3.84440563405384 4.31742231554789 5.96633885743462 0.236258969746158 0.230474759113363 0.234388856696442 0.232771207329278 0.224385969913898 0.230632434750928 0.225879600537414 0.234175153676942 0.237790304999959 0.247320242509931 0.225790786461385 0.228316446669183 0.224404646455454 0.224385969913898 0.243412873967466 0.224385969913898 0.227537145481581 0.228142392875121 0.243312812403078 2 2 - 9724914 9725446 9725233.364 9724871 9726552 - gene protein_coding_gene FALSE TRUE AT2G22810.1 ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4); 1-aminocyclopropane-1-carboxylate synthase key regulatory enzyme in the biosynthesis of the plant hormone ethylene. ACS4 is specifically induced by indoleacetic acid (IAA). Identical to 1-aminocyclopropane-1-carboxylate synthase 4 (EC 4.4.1.14) (ACC synthase 4) (S-adenosyl-L-methionine methylthioadenosine-lyase 4) (ACS4) [Arabidopsis Thaliana] (GB:Q43309;GB:Q9S9C4); similar to ACS8 (1-Amino-cyclopropane-1-carboxylate synthase 8) [Arabidopsis thaliana] (TAIR:AT4G37770.1); similar to ACS5 (ACC SYNTHASE 5), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT5G65800.1); similar to ETO3 (ETHYLENE OVERPRODUCING 3), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G49700.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Solanum tuberosum] (GB:CAA81748.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Brassica oleracea] (GB:BAC00822.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki] (GB:BAB89348.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.623695547953077 -7.54804865867349 1.20399580728494e-05 0.179118456249780 8.35294598810392 8.62888169789073 -0.623695547953077 0.0266777487682930
AT4G33760_at 5.36068290699721 5.23306172672795 4.71315004566618 4.83647972104578 4.96666715135314 4.71481754116702 5.96325753562241 5.89409761923478 4.43876064551754 5.38027415424831 4.07988728781342 5.03845848050376 4.14321918445515 4.1466575994637 5.5280386667086 4.82038147177359 4.99894758466908 4.47513335161615 5.69177979774251 0.221211338185766 0.221678597209001 0.218050724544537 0.230998937608473 0.215386879390278 0.216731702298931 0.215231284555445 0.223922538762901 0.219183734156564 0.225128675433194 0.220242161732052 0.217073254997716 0.222758928947961 0.220392888060696 0.222358068707316 0.217176230805228 0.216431350702224 0.221978780626583 0.220814909745293 4 0|4 /|- 16189299 16190089 16189716.875 16189146 16193271 - gene protein_coding_gene FALSE TRUE AT4G33760.1 tRNA synthetase class II (D, K and N) family protein similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G13490.1); similar to aspartyl-tRNA synthetase [Anabaena variabilis ATCC 29413] (GB:YP_320768.1); similar to aspartyl-tRNA synthetase [Nostoc sp. PCC 7120] (GB:NP_486476.1); similar to putative aspartyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61344.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain GAD; (InterPro:IPR004115); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase bacterial/mitochondrial type; (InterPro:IPR004524); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) -0.660713705732457 -7.54729325892981 1.20511318461219e-05 0.179272637342909 8.35227452445532 10.1223327739159 -0.660713705732457 0.0546449236330829
AT3G13400_at 0.687870303198615 0.604811607884047 0.82346757575311 0.610921605544021 0.770208857761736 0.617059768463623 1.20616005104855 0.769881120664701 4.78170414622237 0.592142588569072 0.790155707586904 0.387395463296399 0.752907429372284 0.145775469783774 0.381810393281648 0.454731947072484 1.45277265827299 0.965637283761387 0.699633233481792 0.210490142915464 0.210172872685237 0.213682070031543 0.210172872685237 0.212549114270232 0.213286010912251 0.21959096061044 0.212678968209193 0.249166795093061 0.215785392909455 0.217986521596172 0.219462237465330 0.218718990060210 0.214764271184812 0.219369045429590 0.21487728767182 0.216006166754240 0.222660801720643 0.2141342438094 3 3|0 +|/ 4356699 4357258 4356972.1 4355145 4357435 + gene protein_coding_gene FALSE TRUE AT3G13400.1 SKS13 (SKU5 Similar 13); copper ion binding / oxidoreductase similar to SKS12 (SKU5 Similar 12), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G55570.1); similar to SKS14 (SKU5 Similar 14), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G55560.1); similar to SKS11 (SKU5 Similar 11), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G13390.1); similar to L-ascorbate oxidase homolog precursor (Ascorbase) (GB:Q00624); similar to Bplo [Brassica napus] (GB:CAA47177.1); similar to Bplo [Brassica napus] (GB:CAA47178.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.734930673761309 -7.54297977534197 1.21151505277674e-05 0.180212864100540 8.34843874986702 2.10674341969542 -0.734930673761309 0.0892312010013904
AT4G25880_at 9.0759907837304 9.12418907724492 9.46627362201848 9.56238412952833 9.6567662391675 9.46240090420428 8.61064484551272 8.3875197595208 7.59211231071117 7.81440108573493 8.09878268487719 8.34141549893785 8.50971867970459 8.50097088554508 8.06355903623228 8.68004924619108 8.64472856892494 8.50790317503864 8.10697892511153 0.145181089969524 0.140303465951923 0.152689040331207 0.145442610068153 0.149025357069713 0.150621502497572 0.140303465951923 0.140303465951923 0.15463161061415 0.147276627958408 0.146007449375352 0.140303465951923 0.144726913712237 0.140303465951923 0.156187317260076 0.143968616918298 0.147892688156057 0.142784272738876 0.148123406902864 4 4|0 +|/ 13157872 13158728 13158252.9 13154717 13159391 + gene protein_coding_gene FALSE TRUE AT4G25880.1|AT4G25880.2|AT4G25880.3 APUM6 (ARABIDOPSIS PUMILIO 6); RNA binding similar to APUM5 (ARABIDOPSIS PUMILIO 5), RNA binding [Arabidopsis thaliana] (TAIR:AT3G20250.1); similar to putative pumilio-family RNA-binding domain-containing protein(PPD1) [Oryza sativa (japonica cultivar-group)] (GB:BAD09696.1); similar to Os08g0519800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062262.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.658965152653176 7.53048825897295 1.23026173341877e-05 0.182989130228708 8.33731543133394 17.2963820430079 0.658965152653176 0.0544841914844081
AT3G60200_at 2.98812979467992 3.55367337878253 3.01111928796622 3.11444597722394 3.40128697445735 3.18424250350894 2.1307891908893 2.49679755776083 2.68948869866151 2.02614288593443 3.74344590597152 3.80420603995287 3.53051988651766 3.75788183968478 3.57287842375288 3.31716869186116 3.52258612231698 3.42621388290886 2.20365388920838 0.24265765940167 0.249482261053944 0.248335466120644 0.252718590969446 0.253629778531012 0.255126277653792 0.256254371694754 0.253699407876581 0.268814912013923 0.247045551547803 0.245624252036346 0.243502819471288 0.246636912821449 0.249463986607096 0.247703569303415 0.243203174613724 0.257392297397534 0.246584971968063 0.248206106141348 3 3 + 22260705 22261138 22260891.182 22260232 22261495 + gene protein_coding_gene FALSE TRUE AT3G60200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44600.1); similar to OSJNBb0016D16.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE04325.1); similar to Os02g0689500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047784.1); similar to Os10g0567600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065435.1) 0.83168015655685 7.53023005182005 1.23065251677956e-05 0.183034948820624 8.33708526690675 5.9304561283531 0.83168015655685 0.123777809775586
AT2G25490_at 9.5583446961883 9.5030019597678 9.81733484093596 9.86882263237738 9.4151829474681 9.98269902154374 8.34014307064208 9.34326519497598 8.69073206266931 8.28404879280215 10.3938037873952 10.0201980469967 10.4860993460457 10.1004286115372 10.0486419403026 10.5286992960394 10.5468236264694 8.98934524152325 8.6130284604045 0.127527457788146 0.126800828897927 0.130365926483923 0.126890639974185 0.134556460071095 0.132229758338647 0.142128744961060 0.130593187457401 0.135147334451874 0.155068851158342 0.126789803912182 0.128193228333284 0.133745910530604 0.13192330175171 0.136327171882407 0.126789803912182 0.132118791582641 0.149556065294709 0.154961655783607 2 2 - 10855129 10855668 10855385.182 10854453 10857610 - gene protein_coding_gene FALSE TRUE AT2G25490.1 EBF1 (EIN3-BINDING F BOX PROTEIN 1); ubiquitin-protein ligase Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. similar to EBF2 (EIN3-BINDING F BOX PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT5G25350.1); similar to EIN3-binding F-box protein 2 [Lycopersicon esculentum] (GB:ABC24972.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE90278.1); similar to EIN3-binding F-box protein 1 [Solanum lycopersicum] (GB:ABB89717.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 1.09740317263390 7.527639991775 1.23457983993015e-05 0.183606713794412 8.33477596629788 18.8128616749861 1.09740317263390 0.199879432869534
AT4G10120_at 10.2548312561452 10.4629441538667 10.3876892848861 10.4921732651610 10.1035625744918 10.0367219302638 11.2184744679103 11.3788885855704 10.3995225512031 11.2674345329370 9.66408077824713 9.70528540721283 10.4209817108281 10.1831960578218 9.25765193004477 11.0784738246789 10.7959520277680 9.78556051045773 10.8541786430595 0.106854297549034 0.107161372551814 0.107002255846918 0.106785518294233 0.105176685879481 0.110719459696187 0.105176685879481 0.105201104284906 0.115120096164149 0.106795862369423 0.113877597917126 0.107786028470795 0.105176685879481 0.110999832166999 0.115276305051132 0.105176685879481 0.110677700079428 0.112520824238923 0.105957815979065 4 4|0 +|/ 6319105 6319746 6319495.5 6314783 6319932 + gene protein_coding_gene FALSE TRUE AT4G10120.1|AT4G10120.2 ATSPS4F; sucrose-phosphate synthase/ transferase, transferring glycosyl groups|ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. similar to ATSPS3F (sucrose phosphate synthase 3F), sucrose-phosphate synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G04920.1); similar to ATSPS1F (sucrose phosphate synthase 1F), sucrose-phosphate synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G20280.1); similar to ATSPS2F (sucrose phosphate synthase 2F), sucrose-phosphate synthase [Arabidopsis thaliana] (TAIR:AT5G11110.1); similar to Glycosyl transferase, group 1 [Medicago truncatula] (GB:ABE86481.1); similar to sucrose-phosphate synthase isoform C [Nicotiana tabacum] (GB:ABA64520.1); similar to sucrose-phosphate synthase 1 [Vitis vinifera] (GB:AAW82754.1); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296); contains InterPro domain Sucrose phosphate synthase, plant; (InterPro:IPR012819) -0.651364323511649 -7.5235266497347 1.24084467156246e-05 0.184526011108054 8.33110650374495 21.0177988680947 -0.651364323511649 0.050283694491358
AT2G17990_at 6.49851990564577 6.48409113006409 6.58233146416033 6.98262107320947 7.26572691822215 7.07985948769882 5.38140077399988 5.47582037225656 5.12513061679554 5.22148035449711 5.62392064924007 5.65051429071109 5.09394200106062 5.55874867784443 5.74574164959644 6.03749461409713 5.8837045434719 5.78594196329545 5.48731447677546 0.224882030580720 0.213387960763487 0.213884903036299 0.219018772274316 0.216139683221318 0.228591442116639 0.215346276547639 0.224120558949390 0.218919007738471 0.223486263767301 0.21662817098541 0.232121992484970 0.223999666963634 0.213387960763487 0.218626803949055 0.220800454957491 0.217499167379412 0.215451084114244 0.213977004906494 2 2|0 +|/ 7834994 7835606 7835220.7 7833899 7835836 + gene protein_coding_gene FALSE TRUE AT2G17990.1 similar to kinectin-related [Arabidopsis thaliana] (TAIR:AT5G66250.3); similar to putative calcium-dependent protein kinase CPK1 adapter protein 2 [Mesembryanthemum crystallinum] (GB:AAR06858.1); contains domain no description (G3D.1.20.58.90) 0.706101294819861 7.52241879095127 1.24253783977690e-05 0.184765376774824 8.33011777623271 11.9440344896675 0.706101294819861 0.0781436613350733
AT3G58570_at 6.97343722491201 6.201843205562 6.14766853213998 6.34231621433312 6.56800024363414 6.17128850103269 3.8901363946955 4.23028243768837 3.71923804581566 3.88305948418517 4.85557936975636 4.62422995342659 4.44258413335126 4.85894477781673 4.71141499930105 4.53104178832163 5.31443903699672 4.74358074724771 3.82349262909753 0.292107908492929 0.266616160524703 0.255097970473608 0.252875894111288 0.263759093479277 0.258181724308236 0.249789494282225 0.248299626457468 0.262223513277597 0.261972079220668 0.251575908474655 0.248016745564244 0.248949353035134 0.247375707951683 0.250255597536105 0.254925791207484 0.247375707951683 0.247375707951683 0.255866605408657 3 3 + 21670742 21671242 21670993.727 21667481 21671509 + gene protein_coding_gene FALSE TRUE AT3G58570.1 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 52 (EC 3.6.1.-) (RH52) [Arabidopsis Thaliana] (GB:Q9M2F9); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G58510.3); similar to Os07g0202100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059135.1); similar to Os03g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051626.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE89166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.967511844074158 7.52206180175852 1.24308396482648e-05 0.184834154730049 8.32979913713204 10.1000333794881 0.967511844074158 0.164749911196366
AT2G28110_at 3.84580788781587 5.1019916111847 6.47169853937654 6.79439127600383 5.01640842911987 5.1959991862814 1.93106951620295 2.39439824329003 2.57075681518078 2.07666089743175 1.93905096794528 1.99335649014051 1.87153604825537 1.82558901703566 2.2179824314187 1.8948973955457 2.73271572759386 2.13711836953834 1.71147139772207 0.300160441716687 0.307307889364854 0.322312135962699 0.330151373784596 0.314594335779277 0.304880167950035 0.292020762782483 0.291670630508791 0.291670630508791 0.294747428434895 0.296054713623549 0.292331201045234 0.291670630508791 0.296194983548384 0.299392905798779 0.291670630508791 0.291670630508791 0.291670630508791 0.291670630508791 2 2 - 11985188 11985773 11985431.364 11985021 11986837 - gene protein_coding_gene FALSE TRUE AT2G28110.1 FRA8 (FRAGILE FIBER8); transferase Homolog to AT5G22940, a member of glycosyltransferase family 47 that is involved in secondary cell wall biosynthesis. It exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase. Protein has a domain that shares significant similarity with the pfam03016 domain. It is expressed specifically in developing vessels and fiber cells, and FRA8 is targeted to Golgi. Mutants have irregular xylem formation, reduced cellulose levels and plants are smaller than normal siblings. similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] (GB:AAX33322.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 1.25410432278066 7.52117241796745 1.24444567537754e-05 0.185024183015133 8.32900521616587 6.69205084084892 1.25410432278066 0.240356325831998
AT3G11850_at 6.32799212879337 6.53807500641363 6.20747953484823 6.43056274531055 6.79479344248566 6.80088076342043 5.13244567544321 4.92809818600604 4.286419704622 4.38508334188885 4.97574258540162 4.69646281228314 4.83302156388741 4.91785866945892 4.53928775278981 4.63189588896649 5.18261703609037 4.75254868797593 4.20632437345641 0.248251608670604 0.248814232218259 0.247931748420497 0.247931748420497 0.250557961288238 0.262620946953719 0.250566546290057 0.249229049202139 0.255469693600371 0.257198274082874 0.248482874962366 0.247931748420497 0.249516450209771 0.255878644879839 0.256866826714795 0.247931748420497 0.253803814626913 0.253083690845549 0.255990575072873 3 3 - 3739264 3740168 3739872.818 3738903 3741720 - gene protein_coding_gene FALSE TRUE AT3G11850.1|AT3G11850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06560.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98276.1); similar to Os11g0575900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068136.1); similar to Os03g0650800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050787.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.675173303484889 7.52052347443252 1.24544026756852e-05 0.185159604579412 8.32842585503752 10.6994351926380 0.675173303484889 0.0637480124488045
AT1G63750_at 5.14538622785033 5.66771180897851 3.28752651536436 3.10612994804126 4.40934617166623 3.81043790270459 4.42695849462448 3.67755545034095 4.62963458808022 4.34636079404728 3.61661993246684 3.78316296726903 3.09904292155386 4.07927050939566 3.4586187372385 3.31229020957582 3.13250908428836 3.81401021574836 4.79753398916749 0.299310482226859 0.30662779964456 0.287965980183637 0.287965980183637 0.308639128920724 0.298887598003661 0.304743944613823 0.292635405903946 0.297536500783594 0.297219088015529 0.29495575318278 0.288730256591639 0.293669108300558 0.287965980183637 0.301927902206326 0.290155497521615 0.315273572017622 0.308068101152362 0.292839444897038 1 1 + 23658438 23658972 23658698.182 23654511 23659022 + gene protein_coding_gene FALSE TRUE AT1G63750.1|AT1G63750.2|AT1G63750.3 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding|ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G58120.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63880.1); similar to Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28507.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G58120.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63880.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -1.06513937295537 -7.51973477251381 1.24665020986033e-05 0.185327020197836 8.32772163859138 8.25544007959153 -1.06513937295537 0.191616511517117
AT1G79560_at 6.64850782719503 6.4758896667921 5.46354162825077 5.40576218431613 6.17068544432158 5.49757982789599 6.35150078833943 6.01164361339213 5.50888415251322 6.16435346282137 4.34865769184931 5.07088442440399 4.53918282896818 4.41644906664989 5.98245729200917 5.26256686629591 5.89239319418144 4.5061622488747 6.30165169062387 0.192511432963878 0.18899520633267 0.189163257625305 0.194725670082291 0.193893940477353 0.191689088803721 0.194122285398215 0.18899520633267 0.191405756228839 0.192639665777315 0.198260686729784 0.18899520633267 0.195379991545141 0.199426116475798 0.189419488269804 0.191448995426603 0.193630551430504 0.197327285236751 0.193862426238863 1 1|0 +|/ 29936091 29937162 29936664.2 29931687 29937478 + gene protein_coding_gene FALSE TRUE AT1G79560.1 EMB1047/FTSH12 (EMBRYO DEFECTIVE 1047); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FtsH protease that is localized to the chloroplast similar to FTSH1 (FtsH protease 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G50250.1); similar to Peptidase M41; AAA ATPase [Medicago truncatula] (GB:ABE92053.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.86338938486615 -7.51757713181866 1.24996670055518e-05 0.185807550037528 8.32579466151518 11.5001258577163 -0.86338938486615 0.134238399388175
AT1G79160_at 6.87489705990631 7.39996839082472 7.3256367274651 7.54863146421458 8.02049715973233 8.196874733977 7.21060719915569 7.32782002655042 6.21999703247326 6.64664557602971 7.71542122078388 7.57514468048789 7.92297815194705 7.5297786237578 6.80001801532144 7.86125233314603 7.34134664448492 7.2121123180306 6.67323302094023 0.220247796514068 0.21505049582091 0.214413604500184 0.220381345541622 0.213893555203115 0.234835613858286 0.211903296056482 0.214282861976806 0.215828709444187 0.224318619210539 0.213465631610188 0.211903296056482 0.221246493926872 0.218657832530979 0.218122849672226 0.216458900699618 0.249798115549092 0.226386834531432 0.226163531282465 1 1 - 29784799 29785388 29785077.909 29784614 29785666 - gene protein_coding_gene FALSE TRUE AT1G79160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16500.1); similar to H0313F03.6 [Oryza sativa (indica cultivar-group)] (GB:CAH68335.1) 0.775525737125925 7.51751924979851 1.25005580117703e-05 0.185808294286953 8.32574295807734 14.4921407827163 0.775525737125925 0.105304075873334
AT1G72280_at 4.35682942132227 4.3187273629653 5.22008660023095 4.88192943289874 3.10296365892751 3.14499473951882 1.56157126617351 1.34506375317634 2.09091326782135 1.55224539419304 2.10981537302616 2.10523892940154 1.43590865625726 2.08783440948124 1.98300724023119 1.63161481401451 1.87804301357372 1.76992938384431 1.4312807022038 0.296294473163695 0.296198745654096 0.311100833741426 0.290893401340561 0.28435764502257 0.287868570570362 0.283875011089403 0.290089922735534 0.290131351161923 0.288554933198966 0.283875011089403 0.286708941759364 0.283875011089403 0.286397363614040 0.284676235036243 0.287191708677104 0.287948977228146 0.292290980843941 0.284951300312925 1 1|0 -|/ 27215703 27216547 27216119.8 27215507 27218327 - gene protein_coding_gene FALSE TRUE AT1G72280.1 AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) endoplasmic reticulum oxidoreductin Identical to Endoplasmic oxidoreductin-1 precursor (EC 1.8.4.-) (AERO1) [Arabidopsis Thaliana] (GB:Q9C7S7); similar to AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) [Arabidopsis thaliana] (TAIR:AT2G38960.1); similar to Os03g0733800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051175.1); similar to putative endoplasmic reticulum oxidoreductin [Oryza sativa (japonica cultivar-group)] (GB:AAT78803.1); contains InterPro domain Endoplasmic reticulum oxidoreductin 1; (InterPro:IPR007266) 0.68781992319533 7.51525894579447 1.25354054813987e-05 0.186313731670029 8.32372354788017 5.27484766217741 0.68781992319533 0.0701766324933746
AT3G09160_at 4.17723502860752 3.2871825123426 2.84415447123807 2.65381545778359 3.94381024518017 3.38362571631054 4.19639389656308 4.06085523195807 3.8124342137305 4.68398846114176 2.98669240377056 1.91166938875809 3.28740693479141 2.89930129319437 2.24299649716882 2.53022805759695 3.49610780029289 2.73750098085136 3.88699882618661 0.218483565629056 0.221083011259926 0.218187151325562 0.220756410287718 0.227373088242606 0.224398875730522 0.222626974106395 0.223003002457993 0.218230596210235 0.223266626446688 0.222051890513639 0.223650542912371 0.21888893815841 0.227255850859377 0.229481202746103 0.217736662859219 0.226770694516509 0.223002069662461 0.21846181591479 3 3|0 -|/ 2805967 2806643 2806391 2805784 2806917 - gene protein_coding_gene FALSE TRUE AT3G09160.1 RNA recognition motif (RRM)-containing protein similar to nucleic acid binding / nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G03480.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -1.04519222110315 -7.5150364543997 1.25388413144852e-05 0.186352259615879 8.32352472851993 7.01303161328429 -1.04519222110315 0.186433762561792
AT1G66540_at 3.92229032888963 3.91735212707939 3.80807621928786 3.83387805482906 3.4428519270055 3.95894401353004 5.92330628177241 5.98188244509545 4.68366819247571 5.53391699522762 3.88294677428346 4.1373747157892 4.72770929077392 5.09874338237613 4.32972059954685 5.80227627128935 6.0829645034781 5.04657008027133 5.31761778514571 0.212412214435538 0.208150397128303 0.219993532237914 0.214761395494003 0.212102542224048 0.216800708887898 0.213920941414393 0.228313837969817 0.220111264073736 0.22406004895965 0.214873855108925 0.209284662510394 0.21514464976582 0.215095067913134 0.216836410329827 0.212497327582423 0.216968219294281 0.215159129440325 0.216090369630635 1 1 + 24829664 24830120 24829880.455 24828122 24830249 + gene protein_coding_gene FALSE TRUE AT1G66540.1 cytochrome P450, putative similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); similar to Cytochrome P450 81E1 (Isoflavone 2'-hydroxylase) (P450 91A4) (CYP GE-3) (GB:P93147); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.732566515384866 -7.49872367840694 1.27935343697096e-05 0.190124714268255 8.30892791970875 9.38204227127403 -0.732566515384866 0.0900004598690382
AT3G52940_at 4.09346653631151 4.29163382141247 3.11449436483509 2.90537176871206 3.85274712712841 3.45465784928210 5.35087513729064 5.48829970479541 5.05659701033491 5.32891458420320 5.76414725362418 5.87265809981159 4.97378027688586 5.66194099323752 5.55297599365974 4.82934605213922 4.07762681778303 4.76414195910961 5.12242353111886 0.271770561192195 0.266523962777883 0.270156645846033 0.278458765093716 0.266523962777883 0.266523962777883 0.275849907643003 0.276277965540897 0.285613960097184 0.266523962777883 0.26881831646285 0.266523962777883 0.266523962777883 0.277610092357691 0.27323724971201 0.266523962777883 0.285630432308494 0.280071962596586 0.267836252071203 3 0|3 /|- 19641359 19642347 19641816 19641176 19644274 - gene protein_coding_gene FALSE TRUE AT3G52940.1|AT3G52940.2 FK (FACKEL); delta14-sterol reductase|FK (FACKEL) Encodes a sterol C-14 reductase required for cell division and expansion and is involved in proper organization of the embryo. Identical to Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Sterol C14-reductase) (Protein FACKEL) (FK) [Arabidopsis Thaliana] (GB:Q9LDR4;GB:Q9LD62); similar to DWF5 (DWARF 5) [Arabidopsis thaliana] (TAIR:AT1G50430.2); similar to Os09g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063949.1); similar to Os01g0354200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042992.1); similar to ERG4/ERG24 ergosterol biosynthesis protein family protein [Dictyostelium discoideum AX4] (GB:XP_647185.1); contains InterPro domain ERG4/ERG24 ergosterol biosynthesis protein; (InterPro:IPR001171); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024)|Identical to Delta(14)-sterol reductase (EC 1.3.1.70) (C-14 sterol reductase) (Sterol C14-reductase) (Protein FACKEL) (FK) [Arabidopsis Thaliana] (GB:Q9LDR4;GB:Q9LD62); similar to DWF5 (DWARF 5) [Arabidopsis thaliana] (TAIR:AT1G50430.2); similar to Os09g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063949.1); similar to Os01g0354200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042992.1); similar to ERG4/ERG24 ergosterol biosynthesis protein family protein [Dictyostelium discoideum AX4] (GB:XP_647185.1); contains InterPro domain ERG4/ERG24 ergosterol biosynthesis protein; (InterPro:IPR001171) -0.728242775117036 -7.49831346570699 1.2800010391417e-05 0.190208154416457 8.30856035815271 9.24713773338779 -0.728242775117036 0.0883025082341718
AT3G05970_at 9.05985762625678 8.97619890883934 9.11003941431 9.10095396188403 8.87818886670205 8.7917834303953 7.51914779280831 7.138532789324 7.32796527409136 7.4529715228521 7.91034272292303 7.78314047349796 7.82315655837022 7.78823296000151 7.79837471350262 7.85556725557066 8.1914254527543 8.00397234297736 7.19106880273828 0.129250326396007 0.126890821994672 0.127477822279471 0.126409501937489 0.124604250513411 0.130706606724731 0.130574755098165 0.137138154001471 0.147337216619121 0.133769212382304 0.13349887819677 0.124604250513411 0.135191931361508 0.137143460122380 0.137150267575089 0.126509203832318 0.132404930417183 0.130120173467217 0.138755551457547 3 3 - 1786524 1787940 1787223.545 1786324 1791808 - gene protein_coding_gene FALSE TRUE AT3G05970.1 LACS6 (LONG-CHAIN ACYL-COA SYNTHETASE 6) encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes similar to LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) [Arabidopsis thaliana] (TAIR:AT5G27600.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96460.2); similar to AMP-binding protein [Brassica napus] (GB:CAA96522.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96461.2); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.68354091620243 7.49331118139345 1.28792657968140e-05 0.191373010474860 8.30407620284083 16.1809770620701 0.68354091620243 0.0690952048803561
AT4G39270_at 4.35736845040065 4.09952151208241 4.53940575874037 4.76290902031507 5.36403924264192 4.72392698253668 2.15097811376205 2.00815288087214 2.79031187646800 2.19720753467599 2.55863471173214 2.46130094096011 2.43760460179198 2.67307475346091 2.61259736731353 2.68912915284101 2.60433121683738 1.97673672687582 2.55797007900985 0.281618277533617 0.278320093431675 0.273108226712666 0.276068678650838 0.289753048700998 0.278098094445902 0.26744151292338 0.26744151292338 0.268067577762503 0.26744151292338 0.268986614293441 0.271984602051118 0.267978832449893 0.268970391638097 0.269031446246122 0.26744151292338 0.26744151292338 0.272784158614682 0.267945552629638 4 0|4 /|+ 18279162 18279600 18279381.5 18276499 18279842 + gene protein_coding_gene FALSE TRUE AT4G39270.1|AT4G39270.2 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G16250.1); similar to Os03g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051121.1); similar to Os07g0134600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058843.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP68881.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.840039016185596 7.48857372673658 1.29548123275006e-05 0.192482601562003 8.29982607947695 6.50920741884952 0.840039016185596 0.127941304276505
AT1G28050_at 7.16066180282836 7.00818463476073 5.61576768451225 5.36312187281958 7.22945615461492 6.58941564966592 3.26452180589951 2.37213514676811 3.13136985459475 3.06037311340026 3.91131019675274 4.01927453300522 3.92602285222957 3.9024047010481 4.27909330545508 3.59077753757394 3.82593032669915 3.85044806217651 2.81986149640928 0.253709485622835 0.254514028759773 0.259336951630798 0.249668633759007 0.270225299150118 0.259894096647012 0.252554834999473 0.251645046464610 0.252227082828839 0.255803976090769 0.249167698843799 0.252365731665403 0.248239284242460 0.250043049815863 0.249162427344224 0.251781550422773 0.248845014624426 0.248150404562709 0.250295891205508 1 1 - 9775804 9776878 9776288 9775515 9777797 - gene protein_coding_gene FALSE TRUE AT1G28050.1 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 15 (COL15) [Arabidopsis Thaliana] (GB:Q9C7E8); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT2G33500.2); similar to Os08g0536300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062363.1); similar to zinc-finger protein C60910-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01231.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 1.07867701370255 7.4789509849159 1.31097348449329e-05 0.194771330591169 8.29118311404391 9.03392101606816 1.07867701370255 0.196787198600382
AT3G58830_at 5.50547392783755 5.56807552232511 4.99823444302181 5.27954213468637 4.65844300038936 4.46321814554343 6.56164338801895 6.79767979920882 6.06409708511272 5.69681542857716 5.46676623955133 5.99377427135635 5.5814629851376 5.95048336532427 5.95468751194946 6.0417880015279 5.72335657512088 5.54375253201701 5.94953670647669 0.210710854776512 0.209481417543869 0.209706631661624 0.212172328102281 0.207871245776761 0.217950732977361 0.211432665146947 0.207335856500119 0.223483557177586 0.223560709928165 0.214932519071378 0.208195182955764 0.21360762997355 0.224765847913618 0.221830722481341 0.211815059891254 0.219061661262725 0.209958137255332 0.214579232592725 3 3|0 -|/ 21766427 21767153 21766853.222 21766030 21767618 - gene protein_coding_gene FALSE TRUE AT3G58830.1 haloacid dehalogenase (HAD) superfamily protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89895.1); contains InterPro domain HAD-superfamily phosphatase subfamily IIIA; (InterPro:IPR010021); contains InterPro domain HAD-superfamily hydrolase subfamily IIIA; (InterPro:IPR006549) -0.689916433289059 -7.47731306672432 1.31363026797413e-05 0.195152912610236 8.2897106184962 11.3217847994474 -0.689916433289059 0.0727815554122495
AT4G09030_at 3.19442770859394 3.70777963404081 5.03533036114995 4.95321143748137 3.74506026404504 3.88189796670507 2.87110364605649 3.74730543765844 3.97423263671448 3.84848698390153 5.3788657719277 4.50812955347154 4.94724449120602 4.95316738281754 4.43075801073504 4.86180891370657 4.41554939975466 4.20410285142911 3.33437701746216 0.253129594284961 0.223739131238549 0.232330122517802 0.237520657833589 0.223739131238549 0.233022620540997 0.244022749696964 0.224241128668906 0.230383429382917 0.224345787865028 0.227433319173365 0.231355347759215 0.226037443935749 0.236439877995897 0.229839109180344 0.225433694645335 0.228746010523464 0.228737233921732 0.226071249083256 4 4 + 5792282 5792600 5792455.273 5792204 5792787 + gene protein_coding_gene FALSE TRUE AT4G09030.1 AGP10 (Arabinogalactan protein 10) Encodes arabinogalactan protein (AGP10). Identical to Classical arabinogalactan protein 10 precursor (AGP10) [Arabidopsis Thaliana] (GB:Q9M0S4); similar to AGP5 (ARABINOGALACTAN-PROTEIN 5) [Arabidopsis thaliana] (TAIR:AT1G35230.1); similar to putative arabinagalactan protein [Lotus japonicus] (GB:CAD89603.1) 1.00857099247312 7.47607859360329 1.31563647233585e-05 0.195437797965490 8.2886005624435 8.10775731175326 1.00857099247312 0.177895468449234
AT3G25610_at 7.65659824446345 8.15819368303033 8.47268881564277 8.76131654606124 7.20245906124002 6.89326275416509 4.07242573933109 4.03723161839538 4.76530135063301 4.81513546078295 4.22647622731422 4.39508835372379 4.04637623072629 4.6566114706369 3.9291272800719 4.48390680315745 4.6902786399587 4.50133753919703 4.30014243396766 0.212100679904574 0.202425266048739 0.205841549655139 0.198813624713691 0.198261355037089 0.210166630213789 0.196922059234882 0.202270435867428 0.199293672044456 0.203425502086939 0.19793334833179 0.194038830177820 0.197421239493145 0.20203546179625 0.197174593062955 0.194038830177820 0.202754736894871 0.200092124298195 0.196911549295908 3 3 - 9310202 9310734 9310429.273 9310179 9314590 - gene protein_coding_gene FALSE TRUE AT3G25610.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 10 (EC 3.6.3.1) (Aminophospholipid flippase 10) (ALA10) [Arabidopsis Thaliana] (GB:Q9LI83); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G26130.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.795305021304649 7.47524306021406 1.31699621037700e-05 0.195626617089399 8.287849112222 11.4032770910709 0.795305021304649 0.113709547889230
AT1G11790_at 5.59355191499538 5.79856910648456 4.40750638524919 4.3172887174192 4.23541058800168 4.64677656929659 6.97925928659074 6.8438624139592 5.22396421975543 5.82358065581091 6.24168562124426 6.68452415303489 5.76521374106374 5.45596013731619 6.96919847577471 5.67463357675262 5.40597180767099 6.12787683033299 5.66496728311899 0.187186162366252 0.194838553155432 0.193114900369064 0.19969804597768 0.197599417930160 0.197074725434835 0.190248307696403 0.189157173333367 0.191645741719126 0.187186162366252 0.202190307358161 0.187186162366252 0.197701248498411 0.206595447872111 0.189918816284554 0.19089631463583 0.195371888514541 0.194748093636789 0.189968549564397 1 1|0 +|/ 3983717 3984922 3984378.556 3981247 3985214 + gene protein_coding_gene FALSE TRUE AT1G11790.1|AT1G11790.2 prephenate dehydratase family protein|prephenate dehydratase similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT3G07630.2); similar to Prephenate dehydratase with ACT re (GB:ABE89101.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912)|similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT3G07630.2); similar to Prephenate dehydratase with ACT re (GB:ABE89101.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) -0.716134729422724 -7.47302871202222 1.32060713625002e-05 0.196149777947216 8.28585710881879 11.1585133373132 -0.716134729422724 0.0843764496930884
AT3G22200_at 10.0907684034838 10.0178086865693 10.3424928758367 10.3607947602948 10.4256913015177 10.1792291121407 9.8055389350516 9.68068759134777 9.41211563390464 9.28515068382683 10.0153126549622 10.157721971786 10.1024947888190 10.3666916144912 10.1799134478246 10.1653207042485 10.008575617476 10.1444587724371 9.1434658100534 0.0812209023990442 0.0787026242417152 0.0795811991677752 0.0811582364072485 0.07644784245932 0.0840254105306183 0.0780727466694338 0.0798409874399032 0.085394256510189 0.0805123864886418 0.0801804024463592 0.0772775068655394 0.0822976622565361 0.0774911244831996 0.0840664553628365 0.07644784245932 0.0790543807632232 0.082848059082008 0.0875940532986496 3 3|0 +|/ 7837689 7838669 7838239.375 7835155 7839068 + gene protein_coding_gene FALSE TRUE AT3G22200.1 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. similar to acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative / AOTA, putative / ACOAT, putative [Arabidopsis thaliana] (TAIR:AT1G80600.1); similar to gamma-aminobutyrate transaminase subunit precursor isozyme 3 [Lycopersicon esculentum] (GB:AAO92257.1); similar to gamma-aminobutyrate transaminase subunit precursor isozyme 1 [Lycopersicon esculentum] (GB:AAO92255.1); similar to viroid RNA-binding protein [Solanum lycopersicum] (GB:CAD12664.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) 0.645334131122509 7.46726066255694 1.33006317435870e-05 0.197540982655754 8.28066486392333 19.8242790778306 0.645334131122509 0.0495521558921589
AT4G36900_at 5.04328078834084 4.94435791405797 5.48447341891002 5.32553984772751 5.5031638922236 6.00729042644452 4.73762814422995 4.77008656913726 4.29079873165834 5.06163399624860 5.5381906044768 5.16469830606768 5.43504084478045 5.28700191620971 4.87350754346286 5.42229725388911 5.80347919450558 5.23063379565227 4.37643129690202 0.181431357658553 0.179781575019797 0.190900207054572 0.186087748422451 0.211594231388966 0.197380690105296 0.181317316908718 0.180372487418301 0.193072602401828 0.179355056217936 0.182479823883824 0.184679212050042 0.180729028705392 0.185606968583499 0.181676558001657 0.177741749087151 0.186211944128401 0.181739534863444 0.181702742698479 4 4 + 17389017 17389530 17389286.273 17388811 17389834 + gene protein_coding_gene FALSE TRUE AT4G36900.1 RAP2.10 (related to AP2 10); DNA binding / transcription factor encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G23340.1); similar to Os04g0648900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054079.1); similar to H0721B11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86045.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.737173358247906 7.46127915869392 1.33994614240815e-05 0.198995401609034 8.27527532440312 10.1872997204591 0.737173358247906 0.0932317810623205
AT1G67830_at 6.05798141802953 6.45121947487116 4.15618488432172 4.09200181912747 4.66945098285812 4.91374786397827 5.33264189165956 5.94622770174446 5.57605132715410 5.85635870552241 5.25653688215652 6.68816576851334 5.50843746362822 5.64814157234067 6.16540173235509 6.0840356595177 4.47802702915042 5.58903386859575 6.25651280439454 0.213250351723398 0.208965737092658 0.209606672238710 0.204514822856892 0.215035465334052 0.219781410890816 0.209430655739880 0.212071200007173 0.240498678524468 0.203204168527056 0.212425808448479 0.208334888149614 0.203204168527056 0.204621286813820 0.212797923909044 0.207811826811824 0.220895202173723 0.224223464291200 0.215861409693327 1 1 - 25435424 25436017 25435644 25435249 25436653 - gene protein_coding_gene FALSE TRUE AT1G67830.1 ATFXG1 (ALPHA-FUCOSIDASE 1); alpha-L-fucosidase/ carboxylic ester hydrolase Encodes a protein with α-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides. Identical to Alpha-L-fucosidase 2 precursor (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) (FXG1) [Arabidopsis Thaliana] (GB:Q9FXE5;GB:Q681W5); similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical protein [Zea mays] (GB:BAD89850.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.854128174664794 -7.45808806216253 1.34525094256550e-05 0.199769764970976 8.27239789137272 10.9891970592684 -0.854128174664794 0.133479357195693
AT4G33550_at 2.59032640051315 2.54459173795975 4.07238288358606 4.89884096815776 3.98113074330034 3.85081386522195 4.89328465165747 5.47358167205955 2.34445762125516 2.59384813380438 3.9848482991174 4.62612744587336 5.13399134180069 4.44156229320210 3.50100113749566 4.10345966753089 5.25739470996033 4.51448864630527 3.37037468406284 0.225683601753386 0.223431650690156 0.233313456677724 0.226283535935433 0.223926029413721 0.225568116706434 0.227537123014338 0.231650810743359 0.231574424542091 0.234569568962633 0.221705809751558 0.224457950851375 0.223673999010752 0.233081380128931 0.220883925979314 0.222413701190120 0.228835673592254 0.225764898005346 0.22422127781346 4 4|0 +|/ 16134583 16134833 16134703.6 16134443 16135059 + gene protein_coding_gene FALSE TRUE AT4G33550.1|AT4G33550.2 lipid binding| similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G30880.1); similar to unknown [Setaria italica] (GB:AAP93138.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 1.00057252290281 7.45721793330553 1.34670134092202e-05 0.199971682113511 8.2716130311737 7.64557878482442 1.00057252290281 0.176384368648776
AT1G56180_at 6.4982954204639 6.25111907600977 5.25547682722166 5.28803922057157 5.92623363942311 6.50764012333403 6.5723748747276 7.01888543679629 6.10170762729895 6.14735030459591 5.01698703796856 5.14375056663679 5.43188085199006 5.27276198059746 4.7432941400649 5.55935371156695 5.5454582956011 4.8957553788153 5.96173837554334 0.230643499130763 0.224657226358500 0.228822028056101 0.227663726976630 0.228284950586758 0.223820990406103 0.232224879524555 0.223820990406103 0.232368572180447 0.226543622892458 0.22694704114585 0.228580609118260 0.223820990406103 0.226943340023346 0.228320945665187 0.224807830840426 0.223820990406103 0.229119831519061 0.225815013298931 1 1|0 -|/ 21029958 21030844 21030440.1 21029569 21031729 - gene protein_coding_gene FALSE TRUE AT1G56180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27290.1); similar to Os02g0169000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046019.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81004.1) -0.854965719884693 -7.45091356552514 1.35726034131043e-05 0.201526015477773 8.26592314328704 11.8004684179274 -0.854965719884693 0.133998589246944
AT2G35790_at 5.8881540752818 5.47377355346264 5.17703569991461 5.00742469296041 4.58464246854465 4.88855488159513 5.86885563781979 6.22743094446342 5.25581877048098 5.18918570837456 3.91377697201859 4.53582682781334 4.45771131783625 4.36487376634709 5.31118055948148 4.06444427693920 4.95399326764761 4.45099254940942 4.95637055677911 0.207183538847203 0.209842620266859 0.203574122289771 0.197702400406012 0.204713417724331 0.200557810099448 0.209430781720193 0.199280590623483 0.205684249571659 0.197702400406012 0.207388668386755 0.199644301844376 0.212507668476235 0.202164766390978 0.199841779118165 0.201609206203781 0.213558029362943 0.211650766080776 0.203991703842896 2 2 + 15048461 15049019 15048742.909 15047758 15049202 + gene protein_coding_gene FALSE TRUE AT2G35790.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO66526.1) -0.788665426680737 -7.45034577113078 1.35821568656529e-05 0.201654282984349 8.26541040472884 10.2096798046211 -0.788665426680737 0.112341419860683
AT1G21010_at 7.5222809608131 7.96300633793005 6.84883176056108 7.42691496339466 8.3991251809777 8.43861588861631 7.02467437672591 7.60781571778761 6.24799030067235 5.69248941874955 7.5203386874044 7.59718858211677 7.96039984175774 8.08485986432717 6.68915482797773 7.0930759485047 8.08989263389826 6.76091257420145 5.5519853782768 0.192230861526601 0.187773523592027 0.189748578247046 0.19209741370011 0.190949916426063 0.187773523592027 0.200258782559714 0.1962776328429 0.211065750078496 0.209304946988341 0.189623204143994 0.187929078462817 0.200144413596483 0.187773523592027 0.207806846551973 0.188511366399221 0.192196272873373 0.190536343978946 0.225130709143618 1 1 + 7346357 7346830 7346562.818 7346145 7346957 + gene protein_coding_gene FALSE TRUE AT1G21010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76600.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAB41200.1) 0.94629188543195 7.44756521598844 1.36290458162759e-05 0.202336814188432 8.26289878056336 14.306557932979 0.94629188543195 0.161417649052141
AT3G52710_at 5.03264695156804 5.35693645781702 5.06507721726009 5.7464082227515 5.45115962591683 5.52510720395842 3.49951224652899 4.08860337019553 3.39320051998179 2.81021405122781 4.06411017574416 4.03321796603505 3.70215725017893 4.82469323801781 3.6509325905471 3.52264327963992 3.57961678503762 3.48044365761554 2.44887699061813 0.257759285870036 0.240899665076964 0.256214652097976 0.252271618723973 0.246457118867385 0.273069760747107 0.241997829938999 0.247264562157951 0.26265254199172 0.240899665076964 0.240899665076964 0.240899665076964 0.240899665076964 0.257049593240015 0.249141713617855 0.240899665076964 0.255918584460538 0.241369096946804 0.250626376292939 3 3 + 19545888 19546432 19546179.182 19545563 19546996 + gene protein_coding_gene FALSE TRUE AT3G52710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36220.1); similar to Os11g0153300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065777.1) 0.96282149576021 7.4471704215317 1.36357174059449e-05 0.202422224891251 8.26254207791714 8.34134343956352 0.96282149576021 0.166157011280173
AT1G32640_at 8.85662867368375 8.8958904821719 8.64136794021913 8.62457845703108 8.46301683322125 8.23052602702264 7.249838897121 7.38815629595888 5.8161735636572 6.6708678572221 6.73508991607599 6.60548736838361 7.08287249408699 6.97402964453526 6.64308110499658 8.09512834336175 7.59515690521958 7.2291138799182 6.2110512661905 0.202445412332585 0.199916893713418 0.199140075679085 0.204220534268674 0.196574338698629 0.214731689872302 0.197135198009827 0.195205304046341 0.208946463786781 0.206946145388550 0.204894018679979 0.205513653720498 0.206368589555285 0.201845910208224 0.206376300215729 0.202639790666970 0.207422981187294 0.206174615260601 0.211767129925633 1 1 - 11799118 11799531 11799319 11798790 11800968 - gene protein_coding_gene FALSE TRUE AT1G32640.1 ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydration stress and ABA treatment and precedes the induction of rd22, whose expression ATMYC2 can activate. Negative regulator of blue light?mediated photomorphogenic growth and blue and far-red-light?regulated gene expression. Positive regulator of lateral root formation. Interacts with the Z- and G-box light-responsive elements of minimal light?regulated promoters. Identical to Transcription factor AtMYC2 (R-homologous Arabidopsis protein 1) (RAP- 1) (Basic helix-loop-helix protein 6) (bHLH 6) (AtbHLH006) (rd22BP1) (BHLH) [Arabidopsis Thaliana] (GB:Q39204;GB:O48644;GB:Q8W2F4;GB:Q9LPJ8); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G17880.1); similar to phaseolin G-box binding protein PG1 (GB:AAB00686.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.639770560927644 7.4412770790445 1.37357271931365e-05 0.203893134454919 8.2572146318852 14.9700967105181 0.639770560927644 0.0473952002505108
AT4G31500_at 12.4522510541054 12.5262975896761 12.8274561101747 12.8252235934862 12.4604572704153 12.231016058525 11.7302863436263 11.6922181258578 10.6251174752406 10.8936110179734 11.3962279271819 11.7432418423045 11.5910763601690 11.6207882848161 11.1615783880333 11.5547924598852 11.3109111089302 11.5619648708949 10.6236332981193 0.0802969253319938 0.0797562641734428 0.080733304490525 0.0804745858071133 0.0836859176565758 0.0795483534145246 0.080440592203636 0.0792798270852039 0.089821033512639 0.080184540757666 0.0797324627714336 0.0792786792431222 0.0792786792431222 0.0792786792431222 0.083891681002473 0.0792786792431222 0.0846011289053195 0.0835965294627681 0.0818009918104254 4 4 - 15273691 15274250 15273981.727 15273477 15275316 - gene protein_coding_gene FALSE TRUE AT4G31500.1 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction. Identical to Cytochrome P450 83B1 (EC 1.14.-.-) (CYP83B1) [Arabidopsis Thaliana] (GB:O65782); similar to CYP83A1 (CYTOCHROME P450 83A1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G13770.1); similar to cytochrome p450 dependent monooxygenase (GB:AAA79982.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.632113518999835 7.43816259470332 1.37888983515582e-05 0.204668618232179 8.2543971467608 23.4464973944274 0.632113518999835 0.0422410562372582
AT1G06490_at 1.45781107742196 1.49402960444241 2.0892178938972 2.14096064089850 2.02152597788825 1.88489356368651 1.52347454579081 1.49087192472543 1.57475484871548 1.58195940297695 2.27655211676177 2.49408370438431 2.41406279206097 2.44732194499755 2.36166948609748 2.36185744719023 2.14290577655511 2.35245985269950 1.8526913566353 0.193149764343438 0.202308575491001 0.190553405230344 0.198594777510785 0.194494304450989 0.195285640180835 0.191226038291570 0.195486848077857 0.192310973046586 0.210677340680974 0.194099793894777 0.194878642580740 0.205261763044733 0.199249104747958 0.196901514041140 0.195487251068979 0.197281932268700 0.198049203053948 0.197826030949728 1 1|0 +|/ 1988142 1988981 1988676.5 1978761 1989045 + gene protein_coding_gene FALSE TRUE AT1G06490.1 ATGSL07 (GLUCAN SYNTHASE-LIKE 7); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a gene similar to callose synthase similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL11 (GLUCAN SYNTHASE-LIKE 11), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G59100.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to putative beta-1,3-glucan synthase [Nicotiana alata] (GB:AAK49452.2); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) 0.614582500824125 7.43802653039865 1.37912263138834e-05 0.204689380950658 8.2542740250983 3.77593115836185 0.614582500824125 0.0266529133996933
AT1G32960_at 6.64696545618936 7.3706007021764 7.84741264919296 7.81732312749329 4.57107800445683 5.09142907897892 1.69758312360615 1.88552444154988 2.32556429594919 2.08641384478965 1.74455968121368 1.92584321849821 2.03938955924352 2.37487083748696 1.95869073482881 2.40145156159358 2.28507969116961 2.28227491319243 2.16941759731234 0.340542866008413 0.337521089448378 0.354932871063522 0.341678490256535 0.344389111844376 0.357404077074674 0.318457440530258 0.317727959057591 0.324447558299115 0.324095830719111 0.317902387294090 0.315790287190471 0.321353492851906 0.327449148348489 0.316654043494471 0.317512576053548 0.321191385356426 0.315845927782703 0.322378499965897 1 1 + 11947960 11948356 11948148.273 11945287 11948630 + gene protein_coding_gene FALSE TRUE AT1G32960.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32950.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.932181864726503 7.43708289741311 1.38073828346387e-05 0.204915368648873 8.25342007694061 7.52614887495734 0.932181864726503 0.157721125158970
AT3G62150_at 5.98766362430121 6.22276350188286 5.66998922054696 5.62064114932419 7.48178391365832 7.10729208815282 2.90343107685329 3.04699002725071 6.08076833745367 4.78041470526697 5.36643704485969 5.08998782950292 4.94466495457024 5.548284532714 4.60981964099611 5.16635212412289 3.95168882824685 4.7009407942547 5.47020011647555 0.232713558871645 0.224588118380796 0.223742297969959 0.226191650582673 0.239589968659259 0.235427921602834 0.240531505299959 0.236580656291423 0.227134326657788 0.223937943627953 0.228592887249987 0.226460970596169 0.224009241697204 0.228188117867982 0.223742297969959 0.228463431297785 0.228351230046311 0.223742297969959 0.223742297969959 3 3 - 23019735 23020453 23020144.091 23019730 23024554 - gene protein_coding_gene FALSE TRUE AT3G62150.1 PGP21 (P-GLYCOPROTEIN 21); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 17 (P-glycoprotein 21) (MDR17) [Arabidopsis Thaliana] (GB:Q9M1Q9); similar to PGP11 (P-GLYCOPROTEIN 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02520.1); similar to PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4), ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G47000.1); similar to PGP12 (P-GLYCOPROTEIN 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02530.1); similar to CjMDR1 [Coptis japonica] (GB:BAB62040.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE92210.1); similar to putative CjMDR1 [Oryza sativa (japonica cultivar-group)] (GB:BAA96612.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.704096058804124 7.43329085345666 1.38725143837786e-05 0.205868113455274 8.24998711499705 10.6881025027749 0.704096058804124 0.0809038390121737
AT1G10370_at 3.88512709642586 3.92350852304838 4.37560292807265 4.54196576760091 5.54170360148843 5.1238304916106 9.54527851232617 9.7256361960631 7.19255450187394 8.34142036247765 8.33441085047343 8.31201978890636 7.83715927724888 8.07179268417534 8.30343457557218 8.01281986851533 7.739332506021 7.66917821238896 7.21902256462604 0.227267621217348 0.221609302313551 0.223497363081626 0.223753156303251 0.216328457544543 0.223069604382998 0.232017576294497 0.238910904867580 0.232217975468472 0.214347665272876 0.224455033581078 0.215823638480148 0.213371595444530 0.217268735923895 0.219964193615186 0.211593708746924 0.221492848321611 0.214097607787189 0.211593708746924 1 1 - 3397468 3398231 3398008.364 3397083 3398359 - gene protein_coding_gene FALSE TRUE AT1G10370.1 ATGSTU17/ERD9/GST30/GST30B (EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B); glutathione transferase similar to ATGSTU18 (GLUTATHIONE S-TRANSFERASE 29), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G10360.1); similar to glutathione S-transferase 1 [Papaver somniferum] (GB:AAF22517.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.711712945342961 -7.4332561714316 1.38731115999545e-05 0.205868113455274 8.24995570736501 13.6425071129488 -0.711712945342961 0.084122468089146
AT1G32690_at 3.15293470111923 3.47442114405363 3.37755711925024 3.52713834486935 3.31893875785945 3.66091012674900 2.4179205763879 2.18766814613540 2.24723876353764 1.86799353761155 2.8395969400628 2.91732067096978 3.02447274607841 2.93129586578329 3.22471547114301 2.96880728693915 3.1859574704194 2.82611996762345 2.42536197745237 0.224776783661607 0.217146880194525 0.231523126952451 0.229953546752042 0.217774776215657 0.226369096378187 0.221797128024919 0.221336885254223 0.230799840726806 0.237041061231678 0.220948313653964 0.217146880194525 0.223612651476402 0.222229014454145 0.220054553803180 0.222754315255085 0.222475311430721 0.222510390444061 0.2228484246887 1 1 - 11821072 11821533 11821292.364 11820888 11821690 - gene protein_coding_gene FALSE TRUE AT1G32690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35200.1); similar to Os04g0591300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053712.1); similar to Os02g0693000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047799.1); similar to OSJNBa0009P12.10 [Oryza sativa (japonica cultivar-group)] (GB:CAH68541.2) 0.736243827384099 7.42909093102616 1.39450375785345e-05 0.206916467590296 8.24618242655263 5.72467806217532 0.736243827384099 0.0941023899428553
AT1G21240_at 3.10474170766014 3.15585686265905 4.98831575519763 6.41095866054539 3.27748361063742 2.33379592636531 -0.424140411807046 0.0365794880710926 0.008926288146501 -0.099093608058371 0.345995405977342 0.079452264827956 0.269818542711008 0.0566787171326049 -0.241000378784547 0.0777347281607611 0.137088467045027 -0.339789706805334 -0.43732364606274 0.676905919942004 0.733703797371149 0.785841256955665 0.805817408050865 0.664791495150498 0.686051993032089 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 0.647521203808289 1 1 + 7436135 7436642 7436241.2 7434292 7436819 + gene protein_coding_gene FALSE TRUE AT1G21240.1 WAK3 (WALL ASSOCIATED KINASE 3); kinase/ protein serine/threonine kinase encodes a wall-associated kinase Identical to Wall-associated receptor kinase 3 precursor (EC 2.7.11.-) (WAK3) [Arabidopsis Thaliana] (GB:Q9LMN8); similar to WAK2 (wall-associated kinase 2), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21270.1); similar to WAK1 (CELL WALL-ASSOCIATED KINASE), kinase [Arabidopsis thaliana] (TAIR:AT1G21250.1); similar to WAK5 (WALL ASSOCIATED KINASE 5), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21230.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 1.50422832678263 7.427284898773 1.39763490021279e-05 0.207367090144572 8.24454555202681 2.79665741643690 1.50422832678263 0.306132422021818
ATMG01370_at 6.77031057323023 8.2052997383317 5.31884942168534 6.43712950720241 5.50619666483923 5.51098679132461 7.69916735644768 8.597232581301 7.14349045485838 7.50648081569014 5.56313412154323 6.41745501037304 6.64231842860664 6.60901884124691 5.02447932490234 6.88937207074371 6.61457723986091 6.18755490727419 7.85321879552084 0.275180048193616 0.268420775209773 0.295992180229236 0.285268080165398 0.27381014252225 0.275096963892969 0.274701983469348 0.275595760212584 0.289763891829322 0.268420775209773 0.268420775209773 0.268420775209773 0.27734899718668 0.275732017568752 0.278722624378289 0.269137896782420 0.287476508182674 0.284723191012976 0.270365791605283 M M - 360736 360995 360848 360717 361052 - gene protein_coding_gene FALSE TRUE ATMG01370.1 Identical to Hypothetical mitochondrial protein AtMg01370 (ORF111d) [Arabidopsis Thaliana] (GB:P92565) -1.69114328917617 -7.42452410062319 1.40243596023407e-05 0.208065399060326 8.2420424082858 13.6279226285079 -1.69114328917617 0.351104344024229
AT1G20840_at 6.62446506885145 7.25548898258178 5.50277830446703 6.16735611039148 6.70418136178546 6.41284053758125 3.47172117314736 4.47889085160841 3.78725746651011 3.71511706499844 5.81219063736531 6.30002786308699 5.71693062988488 5.73882504505837 5.4999055061443 5.10364552278327 4.47464745681302 5.12305395450248 3.68613578094642 0.27522087583852 0.269179624564444 0.289942563158557 0.266572388181372 0.264176133771107 0.293754714294711 0.279563187231914 0.267948703973462 0.275045085132911 0.264176133771107 0.264176133771107 0.264472391585232 0.264791767958802 0.271709521841540 0.276995985087007 0.264176133771107 0.284035705589154 0.27424778471667 0.271577196184065 1 1 - 7245133 7245731 7245422.727 7244928 7248132 - gene protein_coding_gene FALSE TRUE AT1G20840.1 TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transporter/ nucleoside transporter/ sugar porter The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues. Identical to Monosaccharide-sensing protein 1 (Sugar transporter MSSP1) (Sugar transporter MT1) (Monosaccharide transporter 1) (MSSP1) [Arabidopsis Thaliana] (GB:Q96290;GB:Q9LM67;GB:Q9SYQ3); similar to TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT4G35300.1); similar to TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G51490.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE83235.1); similar to hexose transporter 6 [Vitis vinifera] (GB:AAX47312.1); similar to putative hexose transporter [Vitis vinifera] (GB:AAY40466.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 1.24039872448945 7.42418897299687 1.40301995755858e-05 0.208138010703816 8.24173848031657 10.4275436810217 1.24039872448945 0.240982896091884
AT1G17140_at 4.53711368507867 4.64119683018828 2.9749573882613 2.63851077031991 3.85361776670695 4.1539646221376 4.9307944798526 5.05620598849612 6.07275090443705 6.48467091756308 6.85483884014577 7.49352913122984 6.08300579788888 5.95693823722756 7.17870561485472 6.66038246703353 5.10705624701334 6.50280675551518 6.9719903939533 0.275506190404417 0.269021392415422 0.280841548515205 0.297829545569542 0.268098250578654 0.270804468646985 0.269566367829978 0.272439670745226 0.280900069743587 0.272065249043185 0.268098250578654 0.272287407518481 0.272724009578078 0.298213394079156 0.273222453118944 0.269546894059325 0.272815193971659 0.275419315938809 0.274121006334028 1 1 - 5856825 5857225 5856961.364 5856566 5858543 - gene protein_coding_gene FALSE TRUE AT1G17140.1|AT1G17140.2 tropomyosin-related Identical to Uncharacterized protein At1g17140 [Arabidopsis Thaliana] (GB:Q8LE98); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78430.1); similar to myosin heavy chain-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72652.1); contains domain STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6) (PTHR19306); contains domain no description (G3D.1.10.287.40); contains domain STRUCTURAL MAINTENANCE OF CHROMOSOMES 6 SMC6 (PTHR19306:SF2) -0.708105647334177 -7.42385422754029 1.40360355008948e-05 0.208210550620274 8.2414348824051 10.5930261705542 -0.708105647334177 0.0829879500023175
AT1G51940_at 9.5403947337784 9.73140298169913 9.54276085337493 9.46823791541165 10.2440131151375 9.8732310767328 9.21936901316897 9.10834097937677 9.38364612586534 8.81687234440598 10.5588484634305 10.2446166696227 10.2799910706772 10.2057088491883 10.0265670632339 9.43625168100012 9.42892013113487 9.9568536788915 8.85049420161457 0.114817222383480 0.110913010660886 0.119735595284154 0.114219091224550 0.113804314392593 0.115396780022095 0.114218015155277 0.119375567470614 0.122298802574317 0.116091610937804 0.116635438627538 0.110913010660886 0.110913010660886 0.119840221920284 0.114394303007697 0.110913010660886 0.114653044453355 0.115485932230215 0.113056276712806 1 1|0 -|/ 19299771 19300648 19300100.1 19299573 19302787 - gene protein_coding_gene FALSE TRUE AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G21630.1); similar to Os01g0741200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044206.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70119.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) 0.691199645046914 7.41976840495198 1.41074782522049e-05 0.209256224914955 8.23772790728286 19.1080807960147 0.691199645046914 0.075798014528802
AT1G12110_at 9.72630269412513 10.0433403978206 8.30789613760165 8.51299942486938 8.32396988155424 8.18997401611578 9.61292245693872 9.84357707967495 9.53976195753222 9.6317020805653 9.72251601199789 9.84304549928585 9.30434795901027 9.4498111057181 9.86241626966263 9.7744438952228 8.992634661208 9.6933659473752 9.35498730908753 0.113138740102500 0.111848547360473 0.122357377987637 0.123528591451154 0.118410290835631 0.124611170453487 0.111319555980336 0.109605932766023 0.120712566762970 0.110789004324786 0.113892315975806 0.109605932766023 0.116023826025431 0.118960906981172 0.111716891941607 0.112204304157868 0.121223634695687 0.112188116684886 0.114172207630141 1 1 + 4108736 4109184 4108955.091 4105235 4109543 + gene protein_coding_gene FALSE TRUE AT1G12110.1 NRT1.1 (nitrate transporter 1.1); transporter Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Identical to Nitrate/chlorate transporter (CHL1) [Arabidopsis Thaliana] (GB:Q05085); similar to nitrate transporter (NTP2) [Arabidopsis thaliana] (TAIR:AT2G26690.1); similar to nitrate transporter [Nicotiana tabacum] (GB:BAC56915.1); similar to nitrate transporter [Brassica napus] (GB:CAC07206.1); similar to RCH2 protein (GB:AAA80582.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.700660119573928 -7.4190055279343 1.41208608448967e-05 0.209440608051508 8.2370354932334 18.6146926532943 -0.700660119573928 0.0800060573228041
AT2G03470_at 6.72411123041613 7.70472699387814 7.78681399146975 8.13490866076925 8.46639447911491 8.15537343028322 6.75096113059451 7.03945679482857 6.46766272472003 6.54835582922658 8.01047535950989 7.75261137909165 7.49619598241013 7.79781364095803 7.44786958512923 8.02536571168663 7.13566405067391 6.98841274249028 6.6044243380212 0.20979245484412 0.20979245484412 0.20979245484412 0.210027303379301 0.219692030196537 0.234819213453478 0.213030890074563 0.20979245484412 0.223932656389724 0.215093495349333 0.212914838616759 0.20979245484412 0.220560617720544 0.212505057957915 0.210124075519403 0.209902473905266 0.222434069623715 0.227486301869927 0.221808664829228 2 2 - 1045762 1046222 1046007.727 1045449 1047681 - gene protein_coding_gene FALSE TRUE AT2G03470.1|AT2G03470.2 myb family transcription factor / ELM2 domain-containing protein similar to ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G13880.1); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain ELM2; (InterPro:IPR000949)|similar to ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G13880.1); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain ELM2; (InterPro:IPR000949) 1.06135601440886 7.41866673453385 1.4126808428034e-05 0.209514695796172 8.23672796487187 14.6563176824941 1.06135601440886 0.194464553844842
AT3G14770_at 2.65741784545915 3.68132205902345 3.39026141021041 3.68373256513165 4.52736744853897 3.90584249159259 8.19313262932513 8.43912842399392 7.42356301680936 6.50844254986212 7.25693937850164 7.0883670815034 6.06348339656879 6.56804032901655 6.20725874527660 6.50228675808665 5.83738775819201 5.65284995702234 6.55076692858681 0.266475828603627 0.268848817896438 0.259116745875613 0.257776232908668 0.257776232908668 0.268885068749355 0.266110898934505 0.259311679982323 0.266631790874178 0.257776232908668 0.257776232908668 0.257776232908668 0.257776232908668 0.269242686157594 0.266258383242243 0.263984035670768 0.288507578156586 0.268872454621113 0.257776232908668 3 3|0 -|/ 4957796 4958595 4958252.4 4957343 4959711 - gene protein_coding_gene FALSE TRUE AT3G14770.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT1G21460.1); similar to senescence-associated protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92465.1); similar to Os01g0541800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043270.1); similar to Os01g0700100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043983.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) -1.14823170840689 -7.41567374693159 1.41794681151074e-05 0.210281512147043 8.23401044470104 11.4221093627963 -1.14823170840689 0.217616660194139
AT3G05120_at 7.84301788904221 8.29459929958669 8.16065407142246 8.45284398395076 8.93425918100853 8.40035690245037 6.60915962494035 7.36247415367986 5.29930874891305 5.47187790964427 6.34190050240986 5.61659026972815 6.43690550559771 6.51309628428329 5.72239003580786 6.01261525796768 7.01182760938518 6.109847545679 4.62285023129431 0.241159045466297 0.235134149646494 0.243762839117261 0.238222471330074 0.242575392510733 0.252953591801973 0.234344323014853 0.234344323014853 0.241730461998065 0.238440082906498 0.234344323014853 0.234344323014853 0.235622181363339 0.234695643607063 0.238782770803001 0.234344323014853 0.242385282053805 0.241975152566256 0.240942576185285 3 3 + 1431736 1432257 1431975.727 1430477 1432784 + gene protein_coding_gene FALSE TRUE AT3G05120.1 ATGID1A/GID1A (GA INSENSITIVE DWARF1A) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. Identical to Probable gibberellin receptor GID1L1 (EC 3.-.-.-) (GID1-like protein 1) (GID1L1) [Arabidopsis Thaliana] (GB:Q9MAA7); similar to ATGID1C/GID1C (GA INSENSITIVE DWARF1C) [Arabidopsis thaliana] (TAIR:AT5G27320.1); similar to (GB:ABG89394.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 1.02450839465128 7.40597111924176 1.43516365424555e-05 0.212820418288073 8.22519172720786 13.6831667664141 1.02450839465128 0.184920478984035
AT2G13790_at 6.94455773844654 6.80003785703812 7.47296470568538 7.1450151581168 6.1120781555199 6.37135735937014 5.13592757949234 4.60177745217227 3.75147435271614 2.75394766957420 3.78227241240672 4.50290667561428 4.1729759161183 3.78593626491894 3.45629330814086 3.47599396415276 3.83483561247230 3.98667930441393 2.99480690696764 0.508193489397631 0.538584214265343 0.538367390933199 0.533751726539712 0.522341958247321 0.508193489397631 0.508457522501026 0.508193489397631 0.508193489397631 0.519286329662782 0.52531616190376 0.508193489397631 0.555462921917112 0.508193489397631 0.508193489397631 0.508193489397631 0.508193489397631 0.511004841792102 0.516287854875966 2 2 + 5749333 5749557 5749450.5 5748902 5753875 + gene protein_coding_gene FALSE TRUE AT2G13790.1 ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4); protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase similar to SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G34210.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK5 (SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5), ATP binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13800.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase [Cocos nucifera] (GB:AAV58833.2); similar to somatic embryogenesis protein kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:AAU88198.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.806386196873087 7.40419461837572 1.43834025561349e-05 0.213277093102368 8.22357555871524 9.84370433007973 0.806386196873087 0.120017990277835
AT3G62770_at 7.13310155137048 7.49115837368059 7.83301826754213 7.7245199194624 7.90106256183376 7.90410960660734 6.0259277574515 6.81208941474792 6.10576378276392 5.99139991636081 6.10867071439957 6.29813619726104 7.0123465277688 6.8764903405408 6.05280882332558 7.42844257131323 7.31370740072986 7.10934312685525 5.73348018043433 0.216732484675514 0.207552439917816 0.214570598009767 0.209376163987001 0.208507439220551 0.226698980051737 0.220017059184176 0.210771617568316 0.219295551539770 0.210328113023542 0.217491790577045 0.209091457443088 0.211510683993763 0.224297856611946 0.212404734052155 0.207552439917816 0.21368996313269 0.207552439917816 0.21155981536331 3 3 - 23230465 23231736 23231416.545 23229609 23232207 - gene protein_coding_gene FALSE TRUE AT3G62770.1|AT3G62770.2|AT3G62770.3 AtATG18a (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) a) Required for autophagosome formation during nutrient deprivation and senescence. similar to AtATG18d (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) d) [Arabidopsis thaliana] (TAIR:AT3G56440.1); similar to WD40-like [Medicago truncatula] (GB:ABE86644.1); contains InterPro domain WD40-like; (InterPro:IPR011046)|similar to AtATG18d (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) d) [Arabidopsis thaliana] (TAIR:AT3G56440.1); similar to WD40-like [Medicago truncatula] (GB:ABE86644.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.903276783735017 7.39710084421298 1.45110039830567e-05 0.215154656056781 8.21711735605816 13.7123940179007 0.903276783735017 0.150670499502202
AT2G44120_at 8.15911395072773 8.1078418455829 6.75034570765548 6.57045156277154 6.9193169872627 6.6769125746841 7.46443966343212 7.38419096419689 6.97389860914751 6.99231095991601 6.8447074050451 7.66869676621566 6.48138135940664 6.51930187705352 7.71013091368398 6.48092929988423 6.4880629234872 5.48882087974313 6.90056877338444 0.179745737041036 0.176651662298558 0.186033275915445 0.176616349673922 0.186077305032292 0.180111733302591 0.183933935842458 0.182058339480883 0.196856783249738 0.182932163910254 0.177688857374194 0.174310425944307 0.177258419239386 0.181387600277137 0.180428922404534 0.177215124196871 0.182307037560973 0.19061605447905 0.187136671316987 2 2|0 -|/ 18256388 18257130 18256667.7 18256118 18257923 - gene protein_coding_gene FALSE TRUE AT2G44120.1|AT2G44120.2 60S ribosomal protein L7 (RPL7C) Identical to 60S ribosomal protein L7-3 (RPL7C) [Arabidopsis Thaliana] (GB:P60039;GB:O80581;GB:Q42208;GB:Q8GUM7;GB:Q940T2); similar to 60S ribosomal protein L7 (RPL7B) [Arabidopsis thaliana] (TAIR:AT2G01250.1); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998) -0.647489375321253 -7.3936743954 1.45730739379257e-05 0.216060394203687 8.21399523435227 14.0870000114796 -0.647489375321253 0.0547767861274162
AT4G39050_at 6.57958155660073 6.55976841144339 5.3872456240378 5.13722234854701 6.71636936435498 6.59141725044415 7.35615237200995 6.98316027585922 7.98888112652378 7.92234797799756 8.34233749619585 7.98533654274244 7.21062113031786 7.46966594360605 7.67951678595385 7.51872165250853 6.57948459211035 7.86989929095714 8.29552548603911 0.228152214320936 0.221414883665650 0.221670911185068 0.220763708734969 0.208715149808546 0.216931463502488 0.208715149808546 0.219802731042650 0.220866160477093 0.208715149808546 0.208715149808546 0.208715149808546 0.213988425120014 0.222901776370257 0.213886326976259 0.208715149808546 0.221306616160130 0.210670930960341 0.208715149808546 4 4|0 +|/ 18199561 18199881 18199663 18193129 18200691 + gene protein_coding_gene FALSE TRUE AT4G39050.1 kinesin-related protein (MKRP2) similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G21380.1); similar to kinesin-related protein (MKRP1) [Arabidopsis thaliana] (TAIR:AT1G21730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13527.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.699286137343406 -7.38668261120578 1.47006175157447e-05 0.217936654670915 8.2076190440704 14.2392977134884 -0.699286137343406 0.080733354773946
AT1G51660_at 6.57964839170588 6.4902958931903 7.25174892163089 7.52224997167231 6.7910649059186 6.61717806593 6.00671158957179 5.64173808030391 4.98484277820121 3.18825321602226 4.51466174064916 4.69100725180734 4.4622843325547 4.68694920937793 4.01848845177491 4.67592530295605 4.51743615753771 4.69014988655884 3.75667711209297 0.253116122790956 0.253322374980612 0.259087975713432 0.268293543396962 0.254892509791502 0.263123156415995 0.254323087747088 0.260542818821329 0.266446851425437 0.258198519821594 0.249441565110895 0.250197396715425 0.251393291936895 0.253321393982320 0.259311507390074 0.249823080850081 0.249441565110895 0.25510877559235 0.255402777188126 1 1 + 19158753 19159269 19159033.091 19157991 19159615 + gene protein_coding_gene FALSE TRUE AT1G51660.1 ATMKK4 (MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4); MAP kinase kinase/ kinase encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activate MPK3/MPK6 and early-defense genes redundantly with MKK5. Identical to Mitogen-activated protein kinase kinase 4 (EC 2.7.12.2) (MAP kinase kinase 4) (AtMKK4) (MKK4) [Arabidopsis Thaliana] (GB:O80397); similar to ATMKK5 (MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5), kinase [Arabidopsis thaliana] (TAIR:AT3G21220.1); similar to double MYC-tagged mitogen activated protein kinase kinase 4 [synthetic construct] (GB:ABF55664.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.71074186690412 7.38639211511911 1.47059426363220e-05 0.218000893640837 8.20735396801926 10.8669313910359 0.71074186690412 0.0855872072999859
AT1G49840_at 3.90656138843597 4.51187984025862 3.27609437397209 3.82911619897268 3.54509276304863 3.87515328051476 5.1667147501991 5.36763858977409 3.9536095895201 4.65420758577682 4.14732225521223 4.33035207488426 3.92139744428158 3.65525098090642 3.74750388625292 4.02575649415459 4.34357224448207 3.53184434793515 5.49629569595411 0.237715946221433 0.237710670112112 0.236460700376430 0.229793813498736 0.229793813498736 0.233634491160749 0.234045290905227 0.239103204776728 0.253136596735688 0.232588704144628 0.234994120520725 0.229793813498736 0.238557272419335 0.239558588458503 0.231247315596609 0.236027249642839 0.237691706267801 0.238669144393185 0.235121404342083 1 1 + 18457288 18457788 18457558.727 18455738 18458026 + gene protein_coding_gene FALSE TRUE AT1G49840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19540.1); similar to Protein of unknown function DUF620 [Medicago truncatula] (GB:ABD33276.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) -0.922665239554965 -7.38470595630572 1.47368928296411e-05 0.218444962413771 8.20581511042313 8.51690435969566 -0.922665239554965 0.156856073457803
AT1G55810_at 5.73989099027525 5.39419385122327 4.9319096698682 4.88771410161669 5.64433747399543 5.6872574556868 7.11146143533953 6.75810393578024 5.44873108150137 6.36159439939194 6.40064200523009 5.78757100947321 4.92489955903702 5.29351861978969 5.45681618558615 4.9326508600072 5.85352799085612 5.78462068802367 6.23418964937541 0.186897904978136 0.183044695178873 0.193116101842222 0.192425974457233 0.187927326926527 0.187811944828734 0.208528977473735 0.197298036089507 0.192251242950896 0.200938338281655 0.186194770491379 0.187652542593938 0.195234879910613 0.185112672870708 0.196078504983959 0.188529288721714 0.196900311676451 0.186753456774637 0.190094006890029 1 1|0 +|/ 20866551 20867637 20867073.444 20864275 20867932 + gene protein_coding_gene FALSE TRUE AT1G55810.1|AT1G55810.2|AT1G55810.3 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT3G27190.1); similar to uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1) [Arabidopsis thaliana] (TAIR:AT4G26510.2); similar to Phosphoribosyltransferase; AAA ATPase; Phosphoribulokinase/uridine kinase [Medicago truncatula] (GB:ABE83101.1); similar to Os02g0273000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046530.1); similar to Os11g0265000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067657.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836) -0.711832694934318 -7.38209288473749 1.47849954255957e-05 0.21914320219818 8.2034294811132 11.5539182349765 -0.711832694934318 0.0862089151322198
AT1G73040_at 2.49535683054833 2.04882669036052 4.1628352636861 3.91580186858345 3.54562897051217 3.6796597153494 2.71220459706611 3.22061476887577 2.04322535352018 3.13111206403867 2.86342214491381 2.25013498739957 3.31066042696769 2.89761824368779 2.71025573288494 3.18897923624573 3.35486655478433 3.14254901502345 2.39393311988245 0.191521613882256 0.196977316646018 0.190149931090346 0.205557055133041 0.189302610226400 0.199564934151049 0.193059697109779 0.191957360091738 0.192958857599982 0.193381866185293 0.190929439531720 0.190951680989382 0.194245712503609 0.193122422937810 0.189302610226400 0.190496262379703 0.200172241864643 0.189302610226400 0.190311517280907 1 1 - 27478829 27479383 27479093.455 27478721 27479623 - gene protein_coding_gene FALSE TRUE AT1G73040.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G19715.1); similar to jacalin-domain protein [Plantago major] (GB:CAJ38387.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 0.824392339872372 7.38054479618514 1.48135729796723e-05 0.219551965131723 8.20201566060265 5.96639990739882 0.824392339872372 0.126798394249598
AT1G71460_at 2.40735461328406 2.40096955909588 1.97364819841156 2.07244538603565 1.79347195869282 1.76641124538270 3.08074973578779 2.44518233968851 2.60015921854028 2.93629429493463 1.62311027412416 2.22592202820479 2.00773265132585 2.05087427825026 1.96353533297021 2.1116330097568 2.12650052059149 1.79913307318835 3.05260665622224 0.186658989195049 0.188099588647972 0.186096234861137 0.187315784020908 0.182902748598732 0.183557126645284 0.186432881549561 0.185167343019994 0.193823832288725 0.193659643685901 0.187415199101967 0.185074863444282 0.192539780434580 0.183735437308699 0.182902748598732 0.182902748598732 0.188545229822067 0.189483043102588 0.182902748598732 1 1 - 26931927 26932340 26932137.091 26931646 26933978 - gene protein_coding_gene FALSE TRUE AT1G71460.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83376.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.778267387673802 -7.37730506754086 1.48735704872101e-05 0.220426314620453 8.19905576736647 4.66831673085597 -0.778267387673802 0.111412782118807
AT4G02370_at 10.5530457318048 10.9889509811228 11.0433168581391 11.0304557044233 11.2301198217716 10.8165204988313 9.68996843937395 9.80351020140237 9.75035210130813 9.0815665828008 10.0403749721799 9.9972274023765 10.3343889669483 10.3170459045636 9.6469842190489 9.97743873727158 9.85104010843556 10.1888388185301 9.03928465931685 0.129335130487605 0.129628089307130 0.136069461971350 0.13490769884222 0.133535674516570 0.133898433987451 0.136173403647716 0.127683785038119 0.146239984745833 0.140791364810985 0.138913075648681 0.132857189249263 0.128895469070511 0.129433431057489 0.141737948797257 0.132561429569031 0.153578186089993 0.134406498636556 0.142230121209594 4 4 + 1042472 1042931 1042740.818 1042338 1043206 + gene protein_coding_gene FALSE TRUE AT4G02370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02816.1); similar to Os05g0362300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055314.1); similar to Protein of unknown function, DUF538 [Oryza sativa (japonica cultivar-group)] (GB:AAX95409.1); similar to Os05g0362500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055315.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.762500329529693 7.37654380087165 1.48877065040151e-05 0.220620922682999 8.19836002991217 20.3117702824309 0.762500329529693 0.105851601903044
AT1G04030_at 1.20749656309366 1.14464622893620 1.83394829067974 1.88166928614893 1.91934422114440 1.51493335400595 0.903321998267825 0.896281140883361 1.15804024773383 1.08631574642004 1.88379919215518 1.68977599857657 1.68400333747226 1.70644159543888 1.74062881847730 1.80695346978858 2.05420076992467 1.65631975449229 1.27357116334158 0.202657791427160 0.206839554343701 0.216879778316902 0.209441388652007 0.201199225837480 0.201850683855415 0.203459366154128 0.205254786263217 0.206807596400468 0.207517863313632 0.211771314187543 0.207777670049760 0.207676569915430 0.205018064736248 0.205714059315099 0.201199225837480 0.202457329073519 0.206151042650335 0.203027588802819 1 1 + 1041599 1042039 1041806 1040517 1042891 + gene protein_coding_gene FALSE TRUE AT1G04030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44040.1); similar to At1g04030 [Coffea canephora] (GB:ABD93477.2); similar to Os04g0511700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053294.1); similar to OSIGBa0157K09-H0214G12.18 [Oryza sativa (indica cultivar-group)] (GB:CAH68007.1) 0.677330143204198 7.37461395237084 1.49236067937371e-05 0.221138005469596 8.1965959155671 2.88790901183127 0.677330143204198 0.0713155689161004
AT1G52830_at 2.78064827740436 2.72488109975625 3.04967650909437 3.02984748194894 3.4912316835964 3.25394145525061 3.68655291280006 2.82714837237148 2.80368848526469 2.57564778651859 5.44738150050182 6.25213335373445 5.02470514421802 4.65069598157729 5.99156116706251 4.64565619593188 3.77581317028683 3.95971559064536 4.64735795659365 0.254064213750002 0.256266126248663 0.252394716389208 0.255622609997578 0.257828498513948 0.257429278002057 0.252394716389208 0.256171920043269 0.260848161794546 0.266954468604679 0.255806505332949 0.265221856054815 0.252512921802732 0.255396189482797 0.267869010293753 0.252394716389208 0.259373976110922 0.255645434553956 0.261197871909614 1 1|0 -|/ 19676346 19677201 19676919.9 19676164 19677312 - gene protein_coding_gene FALSE TRUE AT1G52830.1 IAA6 (indoleacetic acid-induced protein 6); transcription factor auxin (indole-3-acetic acid) induced gene (IAA6) Identical to Auxin-responsive protein IAA6 (Indoleacetic acid-induced protein 6) (IAA6) [Arabidopsis Thaliana] (GB:Q38824;GB:Q8LEM1;GB:Q9C539); similar to IAA19 (indoleacetic acid-induced protein 19), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15540.1); similar to IAA6 (GB:AAC49047.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.913796485212668 7.3742140737534 1.49310572338118e-05 0.22123347503339 8.1962303090841 7.26083556025468 0.913796485212668 0.154628577392911
AT2G37678_at 7.3854799409951 7.56395019452396 6.6057682732121 6.52812887253055 7.77103631540314 7.5235218376594 5.2811276314953 5.11193214958392 5.77786517311031 5.95792907081278 6.8118487761251 6.33915853161249 6.40577961378698 6.90130221431279 6.44403636735107 6.23835500218886 5.10902616566955 6.20742246741305 5.55144996575077 0.286297531402508 0.287676359676689 0.286297531402508 0.292977143487621 0.304306691024051 0.286297531402508 0.291574829450116 0.286297531402508 0.302814103638091 0.286297531402508 0.286297531402508 0.286297531402508 0.289808924159436 0.288971194504881 0.294322390952960 0.286297531402508 0.306840099342589 0.313266258145118 0.293736391322624 2 2 - 15808938 15809278 15809080.571 15808543 15809871 - gene protein_coding_gene FALSE TRUE AT2G37678.1 similar to phytochrome A specific signal transduction component-related [Arabidopsis thaliana] (TAIR:AT5G02200.2) 0.658096375650631 7.3703131611002 1.50039483150792e-05 0.222298498236213 8.192662483073 12.7561335913582 0.658096375650631 0.0618582765875687
AT3G17350_at 2.96423384743549 3.57741863425945 1.15868764364959 1.26836903852353 2.42643025236990 2.20414995583758 3.06444447613324 3.185880710061 2.84448907707106 3.11487859350646 2.94242979341362 3.87367513946279 2.99924435942049 2.90302371114383 3.28223694589183 2.887078600399 2.04289955102763 2.96722101832453 3.45254146596009 0.26405773767906 0.262351101825623 0.262121494659366 0.271756412611735 0.266338270389275 0.265779861566715 0.263806003986507 0.262606502854009 0.265963666530151 0.264437563609646 0.267247206997758 0.265164740586092 0.262121494659366 0.262121494659366 0.267478656068948 0.262121494659366 0.2701967589883 0.262630774075346 0.267034078988611 3 3 + 5934376 5935010 5934711.273 5934100 5935042 + gene protein_coding_gene FALSE TRUE AT3G17350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G50290.1); similar to Os05g0409100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055526.1); similar to Os06g0364500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057608.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB84591.1) -0.791831050002108 -7.36971035020834 1.50152463279370e-05 0.222450874348387 8.19211094257333 5.54346641248272 -0.791831050002108 0.116369563554268
AT2G46380_at 3.97324998828069 3.38506125456190 2.79557512153798 2.82153280786410 3.02940608346185 2.83235821857149 3.90966305860204 4.43919206733809 5.13437164627600 4.67428056833352 4.46568282602199 5.14492023499818 3.69367349235745 4.78438960727997 4.50768640484232 4.08651065338179 3.470901969885 4.1884504972936 5.11070915131691 0.210114022695339 0.198092830082112 0.206864515483156 0.213501502383360 0.207832855259258 0.204286738149799 0.209746579751947 0.199006981595444 0.210005912486505 0.199408396286962 0.197349378383136 0.205317643593428 0.197349378383136 0.197349378383136 0.197349378383136 0.197349378383136 0.200595572565360 0.197349378383136 0.20433938539156 2 2|0 +|/ 19048384 19049069 19048779.8 19046275 19049421 + gene protein_coding_gene FALSE TRUE AT2G46380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61670.1); similar to unknown [Striga asiatica] (GB:ABE66402.1); similar to Os02g0258300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046475.1); similar to Os06g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057757.1); contains domain Zinc beta-ribbon (SSF57783) -0.868708514444047 -7.36915774582659 1.50256113986249e-05 0.222589407259229 8.19160529095497 8.03120353306044 -0.868708514444047 0.141213943878858
AT3G11620_at 4.37554137483115 4.47875772749447 3.75053063883842 3.3690170884294 4.17513760112217 3.73469974092365 6.12357537644542 5.55612886901048 4.28545482109384 4.5151277953579 4.21909817897162 3.96600092271393 4.0978740562304 4.45848313154409 4.1092351553576 4.15448544942289 3.80093188297981 4.02950656712642 4.60316578353675 0.202164095300139 0.198852231104400 0.194810020155236 0.197597869982512 0.194433007561189 0.19646470900413 0.199408680229489 0.195296334863528 0.202255662822984 0.197671116845125 0.192590752543997 0.192590752543997 0.196004825322992 0.193517773132029 0.192590752543997 0.192590752543997 0.195079580802855 0.194657921609087 0.196547431337729 3 3|0 -|/ 3669660 3670731 3670214.111 3669325 3672040 - gene protein_coding_gene FALSE TRUE AT3G11620.1|AT3G11620.2|AT3G11620.3|AT3G11620.4 BAS1 similar to Os01g0958800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045456.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87115.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379)|similar to Os01g0958800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045456.1); similar to LOC779625 protein [Xenopus tropicalis] (GB:AAI18856.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.86980939245156 -7.36009820776783 1.51966408384712e-05 0.225107840740274 8.18330903310101 8.73160757782332 -0.86980939245156 0.141882373148540
AT1G09830_at 7.38557315429655 7.56484810085764 7.23319769680767 7.23829938611672 6.46095315081562 6.36722060746294 7.34150609066457 7.81394533442728 7.31227956160322 7.27926033398899 5.87616472731031 6.6041093534994 6.1370660068466 6.60515781294416 6.56132228599133 6.75716327751864 6.25235077952844 6.19950296199707 6.72340256431619 0.189122623671809 0.181433547863273 0.183503717537906 0.183077984017972 0.187045996321043 0.176413935522384 0.175705465517555 0.206209326169889 0.202307314335812 0.175705465517555 0.181362590642664 0.185263180798402 0.183479281569029 0.187802295040158 0.183496252417616 0.179264743294538 0.182380198810255 0.183666471184543 0.185984943112774 1 1 - 3192811 3193416 3193092.636 3192683 3195027 - gene protein_coding_gene FALSE TRUE AT1G09830.1 phosphoribosylamine--glycine ligase (PUR2) glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide Identical to Phosphoribosylamine--glycine ligase, chloroplast precursor (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase) (PUR2) [Arabidopsis Thaliana] (GB:P52420;GB:O04505); similar to glycinamide ribonucleotide synthetase [Nicotiana tabacum] (GB:AAR06584.1); similar to Os08g0191200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061170.1); similar to Phosphoribosylglycinamide synthetase [Medicago truncatula] (GB:ABE92069.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Phosphoribosylglycinamide synthetase; (InterPro:IPR000115) -0.716213314512872 -7.3582088328668 1.52325723668986e-05 0.225624861898502 8.18157730184566 13.9152356755181 -0.716213314512872 0.0889423805162769
AT1G01725_at 6.35305810585401 6.16456007932608 6.6941084016789 6.61026831079433 8.07669954895142 7.55845410549501 5.80659699824147 5.93008203737573 5.35153657568298 5.4538496666038 6.06954431166301 6.05533226193816 5.87370123978852 5.78471389055355 5.52662660491491 6.32759957947848 6.28158094911934 5.28619606845444 5.96074029367657 0.219262158140015 0.219802026220483 0.213157862536024 0.224083889535206 0.223461397713408 0.225838801702543 0.211467297497061 0.213191451096896 0.235288040675105 0.215272198678970 0.214103077166467 0.212767641222606 0.218068739048566 0.214913366473228 0.22081323762765 0.215139895059512 0.219172787867463 0.222013910030372 0.213857491864606 1 1|0 -|/ 270019 270709 270415 269792 270775 - gene protein_coding_gene FALSE TRUE AT1G01725.1 unknown protein 0.741630652224139 7.35791916981554 1.52380891597280e-05 0.225691338544732 8.18131176040314 12.3939138027446 0.741630652224139 0.0988667157833079
AT2G40020_at 6.30566978314965 6.04385145886169 6.28383445926505 6.21562829194133 6.20635056003711 5.73824623634631 7.61287079828306 7.4300094550683 6.30804078928986 6.90509326597987 6.24369922924225 6.1543834501862 5.89934135381334 6.04921766834625 5.85076679799404 6.08638371221942 6.28452221591458 6.05432871200346 7.25504140946377 0.213014848490215 0.212554339234516 0.209302021533639 0.207691763247854 0.207945689251431 0.219633537073463 0.231732827112829 0.224371911771118 0.218180724796198 0.212964546051793 0.21206177724268 0.210783193832111 0.207691763247854 0.218689561338981 0.216434324202289 0.213534221649238 0.215837668985358 0.226908208512528 0.228098679978986 2 2|0 +|/ 16719216 16719858 16719642.1 16718057 16720148 + gene protein_coding_gene FALSE TRUE AT2G40020.1|AT2G40020.2|AT2G40020.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2); similar to Tropomyosin; Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE88541.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001076490.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2); similar to Tropomyosin; Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE88541.1) -0.740990124694727 -7.3540619606976 1.53117570245944e-05 0.226767121534243 8.17777456818614 12.9298354040571 -0.740990124694727 0.09877175019284
AT1G72300_at 6.2627691906589 6.51690323772959 6.37018903826181 6.72913696322208 6.19285313814106 6.65997661343055 7.61713925809473 7.79908953442472 7.20699996013167 7.21921457309841 5.99710898736448 6.08216518034901 6.51883987820898 6.32218254215182 5.647644506677 6.77220237289616 6.4202640652398 6.56681209034227 7.48596243934119 0.157873664232432 0.172507953440486 0.163280308005098 0.163419080898933 0.164671431309759 0.167981583144589 0.165544858887581 0.165392254669063 0.173966819672865 0.171907115224883 0.160771016209802 0.163574373285358 0.158200534817416 0.162374386771766 0.167551607855501 0.164343352187909 0.166604258298318 0.160994080389653 0.163403988670036 1 1 - 27221451 27221841 27221667.636 27221139 27224785 - gene protein_coding_gene FALSE TRUE AT1G72300.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53890.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17250.1); similar to putative leucine-rich repeat receptor-like kinase [Oryza sativa (indica cultivar-group)] (GB:AAU12600.1); similar to putative leucine-rich repeat receptor-like kinase [Oryza sativa (indica cultivar-group)] (GB:AAU12603.1); similar to leucine-rich receptor-like protein kinase [Daucus carota] (GB:AAL99366.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.787046452458253 -7.3513152547748 1.53644491226610e-05 0.227532127057486 8.17525439406496 13.5659878436258 -0.787046452458253 0.115407866682131
AT2G02370_at 7.2369527067086 7.530538755038 7.77425529950597 7.82303980727298 8.02425475601343 7.92976260781333 6.3077981795656 6.53867462456892 5.13687953208806 4.81955368428031 4.98066308136949 5.03989530086578 5.36807316904514 5.50574979333147 4.74086729277779 5.48554902180405 5.78436059825347 5.05696950013896 4.73298891563853 0.25212919324673 0.253720377536974 0.257504522527266 0.260549081005716 0.256797404755206 0.263750819580252 0.250019240563886 0.250019240563886 0.260818233917046 0.250450837212058 0.251090110130645 0.252548738535928 0.25196774512444 0.252506443449045 0.262343610326612 0.251143625778599 0.263364338362089 0.258294519729956 0.256821465218159 2 2|0 +|/ 622381 623059 622684.222 621154 623343 + gene protein_coding_gene FALSE TRUE AT2G02370.1|AT2G02370.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12450.1); similar to At2g02370/T16F16.16 [Medicago truncatula] (GB:ABD32921.1); contains domain UNCHARACTERIZED (PTHR12677) 0.66656448843856 7.34918371892103 1.54054743441096e-05 0.228124264087575 8.1732978795905 12.4665295989111 0.66656448843856 0.0672034775838747
AT1G55450_at 10.378450759379 10.2397943330028 10.4686758453187 10.4537534073668 10.7469533881295 10.3930565990219 9.0605192428871 8.6785481640882 10.4084122469191 9.61490938745329 10.3614190154903 10.8048310385515 9.88315098021198 10.5285937681359 10.3467150589008 10.1519993708405 10.0557774996796 10.6774490016244 9.45280309404972 0.106046123027061 0.098591198669588 0.098591198669588 0.0990907228228555 0.101816451048660 0.105850669694832 0.103547454099018 0.109747921271103 0.108855323494995 0.105520061169582 0.103505400084404 0.100266354709716 0.101028748681153 0.102672453479329 0.103210078373799 0.098591198669588 0.102159773921589 0.0995401895772415 0.102632740168508 1 1|0 -|/ 20708951 20709685 20709375.8 20708593 20710556 - gene protein_coding_gene FALSE TRUE AT1G55450.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT3G54150.1); similar to embryo-abundant protein EMB-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89030.1); similar to Os01g0716500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044071.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.726074371162636 7.3474894026987 1.54381685324029e-05 0.228592961459289 8.1717422012228 20.1407774054760 0.726074371162636 0.0932880417021744
AT3G10930_at 1.98583676936904 2.05556016031823 2.47416674088754 2.53845616747598 2.01937976523166 1.98703330573168 0.566640934600404 0.405093775736442 1.34669311273281 1.24723619339922 1.45747370435913 1.99280821498835 0.927431477307247 1.67371197123670 1.22890792245570 0.649797829194618 0.841711876020768 1.41993054479287 0.559350417101834 0.258304391534734 0.255646813201969 0.258100898268897 0.269861065675003 0.259594234156874 0.251793587812272 0.253988272595154 0.253202754314658 0.251553879743784 0.256329221389904 0.247159545811682 0.247159545811682 0.251362709686268 0.250499091655339 0.247159545811682 0.249307648999593 0.253195867569122 0.252092664974992 0.247461768107376 3 3 - 3420249 3420513 3420395 3420135 3420837 - gene protein_coding_gene FALSE TRUE AT3G10930.1 unknown protein 0.612177268146078 7.3358343233698 1.56651017076283e-05 0.231937495883145 8.16102919450365 2.91655341923006 0.612177268146078 0.0328978051980858
AT3G23030_at 9.8375787190991 9.82359027337283 10.5216409847923 10.4591466672497 10.7773309798078 10.7693410505320 9.8997913118533 9.95637060596238 9.9849869776392 9.5612660750269 10.6355715284423 10.2376339157561 10.2511710782235 10.2349098999182 10.7868129323444 10.2170254666759 10.4852706658574 10.1643527370912 10.2530003154428 0.107122406413118 0.107968185393447 0.108775812804073 0.107415331080108 0.105212025747092 0.103907107338098 0.105211297337386 0.109545573183216 0.119982650470707 0.111660696789629 0.109056634383359 0.103907107338098 0.107316247635341 0.108972327649806 0.109738216561921 0.103907107338098 0.107032563931568 0.107599428461002 0.108783439507440 3 3|0 -|/ 8181096 8181657 8181357.2 8180775 8181807 - gene protein_coding_gene FALSE TRUE AT3G23030.1 IAA2 (indoleacetic acid-induced protein 2); transcription factor auxin inducible gene expressed in the nucleus Identical to Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2) (IAA2) [Arabidopsis Thaliana] (GB:P49678;GB:O22596); similar to IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14560.1); similar to auxin-responsive protein (GB:AAA16569.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.598020632512937 7.33494870878951 1.56824913463504e-05 0.232179284382717 8.1602143344622 20.4104378161211 0.598020632512937 0.0148527605154230
AT1G49630_at 4.13570453010691 4.50467247434308 3.5432575597403 3.75879259367624 3.84529609538959 3.38904215916092 4.52025524186385 4.96067131753026 4.77833042935612 4.98055041626247 3.53058836649871 4.05458568673039 4.29769828408419 4.20758869374728 3.87709969162863 4.45318309704796 4.08127005147721 3.56599430895664 4.59336994562178 0.215447234163733 0.209489181638783 0.217257073588161 0.211431549277291 0.209980701564822 0.212767337516278 0.212814233089920 0.213752597101389 0.211718177959366 0.208239921571954 0.212262549386925 0.215943160506449 0.213974212602288 0.215410851181477 0.207460959804584 0.20877591779035 0.208883172575788 0.210218347870788 0.208119860772439 1 1|0 -|/ 18372092 18372934 18372516.7 18371261 18379049 - gene protein_coding_gene FALSE TRUE AT1G49630.1|AT1G49630.2|AT1G49630.3 ATPREP2; metalloendopeptidase Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed in flower, leaf and root. Not expressed in silique and shoot. Identical to Presequence protease 2, chloroplast/mitochondrial precursor (EC 3.4.24.-) (PreP 2) (AtPreP2) (Zinc metalloprotease 2) (AtZnMP2) (PREP2) [Arabidopsis Thaliana] (GB:Q8VY06;GB:Q9FX91); similar to ATPREP1/ATZNMP (PRESEQUENCE PROTEASE 1), metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT3G19170.1); similar to Metalloendoprotease HMP1 (insulinase superfamily) (ISS) [Ostreococcus tauri] (GB:CAL56365.1); similar to Peptidase M16, C-terminal:Peptidase M16, N-terminal [Chloroflexus aurantiacus J-10-fl] (GB:ZP_00769237.1); similar to Peptidase M16C associated domain protein [Syntrophobacter fumaroxidans MPOB] (GB:YP_845783.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16C associated; (InterPro:IPR013578); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) -0.835905681764005 -7.33041284555365 1.57718821227915e-05 0.233486942945805 8.15603901828889 8.47850380627714 -0.835905681764005 0.132330440748597
AT1G53910_at 8.93739042900962 9.1269765751785 8.98006317434323 8.98996363731499 9.23037462802867 8.7879528677825 8.14531386001119 8.06182974776176 6.76152811011385 6.26716805927893 8.06882956202574 7.42566643227375 6.96971156080035 6.9000033014539 7.56724700379097 6.93119992590806 7.23009153198254 8.24762844027212 6.29512863054733 0.262674229523299 0.261127546258979 0.263525291418013 0.263367309470777 0.261766512467463 0.265277680658876 0.258580028453391 0.260701934552713 0.283280937787895 0.258860821819497 0.254582704837743 0.254582704837743 0.261859426593022 0.26489114494371 0.257715064661124 0.256860252818117 0.260332431637396 0.262223383367748 0.263344920824698 1 1 + 20139659 20140185 20139942.818 20138780 20140638 + gene protein_coding_gene FALSE TRUE AT1G53910.1|AT1G53910.2|AT1G53910.3 RAP2.12; DNA binding / transcription factor|RAP2.12 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.702741605188572 7.32878027619194 1.58041900472258e-05 0.233949425269083 8.15453546605744 15.7118941914922 0.702741605188572 0.084557621419718
AT3G62870_at 11.0667685925196 11.0612831237654 10.5412327478160 10.5398768772251 10.6530178724202 10.6184819962076 11.3087023128013 11.4240909189824 11.0424924225441 11.0215148878621 10.4052683349541 10.6525345432255 10.3648834450492 10.3018628655757 10.8598446062345 10.1824057228045 10.2339664710677 10.3751229466925 10.9270608670621 0.0678299474716554 0.0680951893407637 0.0695819567666965 0.072538331535605 0.0699351048531267 0.0717994703573783 0.0714126782738688 0.0682385764346627 0.0732293691717427 0.0698230599523598 0.0692636445006294 0.0677766146028015 0.0677766146028015 0.0743167892804896 0.069318015301049 0.0691280794236348 0.0737785124567931 0.0711714340260805 0.0682648668952374 3 3|0 -|/ 23253847 23254664 23254251.667 23253640 23255328 - gene protein_coding_gene FALSE TRUE AT3G62870.1 60S ribosomal protein L7A (RPL7aB) Identical to 60S ribosomal protein L7a-2 (RPL7AB) [Arabidopsis Thaliana] (GB:Q9LZH9); similar to 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana] (TAIR:AT2G47610.1); similar to 60S ribosomal protein L7A-like protein [Solanum tuberosum] (GB:ABB72809.1); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038); contains InterPro domain Ribosomal protein L7A; (InterPro:IPR001921) -0.601047736236131 -7.32867410652918 1.58062935675906e-05 0.233964757387477 8.1544376728677 21.6111862266038 -0.601047736236131 0.0208666798694364
AT4G10140_at 8.04659405700702 8.07953074240656 8.09882842537984 8.41613359021089 8.65502527352824 8.4004984857559 7.59158871394692 7.30471668031546 6.63457400527575 5.84783105586511 6.73843203311044 6.69627122192607 6.67783841224711 6.67099930627937 7.28472694168061 6.48643819967348 7.23902237288094 6.61828654484427 5.59217693178066 0.212994385038638 0.209214781143273 0.209073135900888 0.211127911053071 0.209073135900888 0.209073135900888 0.211933042481244 0.219511426360097 0.209073135900888 0.209384741736870 0.211216179637384 0.209745309183948 0.218465034067747 0.209951687195186 0.212399938698935 0.214376723065909 0.209073135900888 0.21425219638534 0.209073135900888 4 4|0 +|/ 6322574 6324324 6323832.7 6322453 6324660 + gene protein_coding_gene FALSE TRUE AT4G10140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33490.1); similar to hypothetical protein LB305 [Leptospira interrogans serovar Lai str. 56601] (GB:NP_714849.1); similar to Os05g0105500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054411.1) 0.70682755503642 7.32722288231412 1.58350766157068e-05 0.234374968989077 8.1531007769572 14.4872957677626 0.70682755503642 0.0863275419224943
AT1G79390_at 6.059654857351 5.80280515688154 4.63358219307703 5.51724298196995 5.08180453245327 5.01946150236059 6.49854699359343 7.03861291030024 5.54173299617369 6.02319227948255 4.82029065118927 5.03431019302478 5.24633227993907 5.02515646605762 4.87413828896175 4.86801825100402 5.03905078946029 4.71932516385655 5.50920166908536 0.216834432044476 0.211450751094164 0.211516437944872 0.213743814313168 0.209694377069645 0.202450387325515 0.220865417057348 0.213361535486814 0.208402857281071 0.208191373752274 0.204794928883609 0.207921170945542 0.204908404631638 0.204363398678999 0.207527204146353 0.206907248222413 0.209126170250332 0.212091506225065 0.205642844924497 1 1 - 29868371 29869094 29868755.091 29868118 29869214 - gene protein_coding_gene FALSE TRUE AT1G79390.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23141.1) -1.01246503243844 -7.31775256880019 1.60242969340316e-05 0.237159594623668 8.14436880214586 11.0288155953403 -1.01246503243844 0.184965080261844
AT1G19300_at 2.78812870167746 3.2258956957932 4.11361017606164 5.132402058934 2.61594743460026 2.30398209674672 2.30767015643986 2.4393181109334 2.68623385248034 1.78304384527416 3.50862504255836 3.64195028896907 3.26487155849791 3.32300989911738 4.38475544659159 3.53955155209371 2.9577340934544 3.55004670458718 2.23521100243571 0.208204615439336 0.197966840128476 0.219445566905492 0.200834424980334 0.202045924420852 0.210951185235037 0.207953309814389 0.203010868045135 0.202733950624414 0.196940896066652 0.195581901075973 0.200227540088887 0.211155551810757 0.205829588121067 0.200886583016468 0.195581901075973 0.203528536631462 0.201270874761571 0.205346571279863 1 1 - 6671452 6671953 6671737 6671128 6672644 - gene protein_coding_gene FALSE TRUE AT1G19300.1 GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL2 (Galacturonosyltransferase-like 2), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G50760.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE78500.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 1.06886039093915 7.31257990367281 1.61286741803623e-05 0.238688249195182 8.13959374484893 5.9939431238802 1.06886039093915 0.200641221913058
AT3G51960_at 3.81740923724109 3.95267272044032 4.37085369979313 4.23584284087931 4.99630158144356 4.60087786307844 3.53771269309206 3.34372523531795 2.54934605953760 3.30813062925937 3.37742295822077 3.20943216432028 3.82351089407784 3.24839944758263 3.38037235012284 3.62476635097504 3.9776076418482 3.4591508589036 3.1587306837261 0.23078734385148 0.239698737772189 0.237750892222565 0.242837018067518 0.226666723432737 0.260900787849652 0.230561508966122 0.244588472502504 0.226666723432737 0.232189557014314 0.226666723432737 0.231327416639892 0.232258977832004 0.226666723432737 0.239576271455687 0.228532208355332 0.238285401250825 0.232609917796704 0.232652996367088 3 3|0 -|/ 19294245 19294707 19294433.778 19293579 19295124 - gene protein_coding_gene FALSE TRUE AT3G51960.1|AT3G51960.2 bZIP family transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16770.1); similar to bZIP transcription factor bZIP121 [Glycine max] (GB:ABI34680.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.697634700262231 7.31164616346394 1.61475935467253e-05 0.238952089304441 8.13873135131495 7.36591712929278 0.697634700262231 0.0830870012836808
AT3G54640_at 10.1260617117212 9.9215343708193 11.0519363689852 10.9135188980914 9.98649955180522 9.70816055774192 9.04816067275005 8.47061784205336 7.59556205784094 8.31926368585225 8.25988119137479 8.99904393913424 7.92583282784447 8.5655779786497 8.52459160229833 8.5714795009034 8.36811512184865 8.4419054388804 7.76914330721541 0.167297797730748 0.167297797730748 0.168070764205423 0.167623163209402 0.171990507959527 0.170136302091111 0.168014963353642 0.175218334931682 0.179890393828744 0.182208511393456 0.175713247323345 0.167618521635491 0.173098484294388 0.171493089494214 0.174423205461107 0.174191990647139 0.178231761720611 0.174470039662815 0.177905853087399 3 3|0 -|/ 20234311 20235547 20235071.3 20234126 20236501 - gene protein_coding_gene FALSE TRUE AT3G54640.1 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). similar to tryptophan synthase, alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT4G02610.1); similar to tryptophan synthase, alpha subunit (TSA1) [Isatis tinctoria] (GB:CAH56477.1); contains InterPro domain Tryptophan synthase, alpha chain; (InterPro:IPR002028); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009) 0.792916147316915 7.31097634364902 1.61611800793017e-05 0.239136981633428 8.13811263162581 18.0791661469558 0.792916147316915 0.118894869777350
AT3G04980_at 2.03744804991734 2.24692352057907 2.72198505950348 2.97262668637562 3.02628721129633 3.02433572082001 1.89619309244660 2.44240636396315 3.00374724337356 2.11459787787155 3.66854127580236 3.47578937948647 3.04898319529132 3.09871830861418 3.44785103414811 3.54351806717166 2.75281532899582 3.24025882327653 2.47115980498255 0.228260806296936 0.224834655535176 0.223972290077461 0.223516275122019 0.229943199180878 0.234596944193436 0.230395588192344 0.221288789122504 0.236680326000383 0.233777696390456 0.227721899760948 0.223991999433829 0.225274565617395 0.224783979843948 0.221288789122504 0.227374653114337 0.256773021142516 0.239521745930690 0.229169755619499 3 3 - 1378698 1379170 1378954.909 1378690 1382187 - gene protein_coding_gene FALSE TRUE AT3G04980.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G27240.1); similar to heat shock protein DnaJ N-terminal domain-containing protein [Musa acuminata] (GB:ABF69988.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.767645181980705 7.31077926972534 1.61651798395772e-05 0.239180000906384 8.13793057953928 5.45322291411646 0.767645181980705 0.110138647926981
AT3G50480_at 10.5716707906330 10.6167571443391 10.9179931156291 11.1060234688017 10.0480251385685 9.69079596130056 5.42748571306567 5.8423708626425 9.43333467730287 6.92903528085174 6.91373936666105 7.23187072763492 6.00649157149132 7.78079072511638 6.43279896094068 7.66923250926084 6.33095547958178 6.90934944016418 6.89827415967543 0.288682515651071 0.292575116197869 0.290680813518613 0.292762544306295 0.293740940027962 0.287422772461895 0.282304321685300 0.287118978278818 0.282342108459373 0.282304321685300 0.283347607166553 0.282304321685300 0.285383728425991 0.282304321685300 0.285078354740520 0.282304321685300 0.292312914031011 0.282304321685300 0.282304321685300 3 3 + 18744271 18744913 18744428.909 18744049 18745369 + gene protein_coding_gene FALSE TRUE AT3G50480.1 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 similar to HR3 (HOMOLOG OF RPW8 3) [Arabidopsis thaliana] (TAIR:AT3G50470.1); similar to HRa [Brassica oleracea var. alboglabra] (GB:AAP45320.1); contains InterPro domain Arabidopsis broad-spectrum mildew resistance; (InterPro:IPR008808) 0.740996925867304 7.30920941510186 1.61970792318803e-05 0.239635787235669 8.13648017815263 16.6091160928141 0.740996925867304 0.100480635345593
AT4G27480_at 5.64781145404073 5.72526519402972 5.61017943917181 5.00330892962926 5.75704106269017 6.37013362828359 2.72803726021652 2.56058177594348 1.77675938200188 2.09560902846311 1.85134423669581 1.98905712155398 1.56930881732258 2.11104115758523 2.22074891844247 1.96152839001546 3.19019670380182 2.14755253395251 1.68253389006370 0.300579514313559 0.302845912358025 0.303380598515651 0.311200757055936 0.311669696367377 0.30923610931963 0.294451656644669 0.293937771766637 0.296753422915292 0.298753322002939 0.28947144735432 0.297238654242892 0.291115539241412 0.28947144735432 0.296909172728363 0.290379955004112 0.296323574666915 0.290607309998858 0.293648522123642 4 4 - 13736884 13737472 13737135.273 13736841 13738921 - gene protein_coding_gene FALSE TRUE AT4G27480.1 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT3G15350.2); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) 0.899102489315547 7.30867576698359 1.62079383538115e-05 0.239780240006287 8.13598705217306 6.91616051054939 0.899102489315547 0.152662732500388
AT4G24120_at 6.70967384062946 6.8559466023849 6.58781758855356 6.63809208795125 5.45128583192108 4.95419661687791 6.9369890411271 7.47151699380463 5.64233126572268 5.5496835655178 5.75627615363813 3.28965229338066 4.32185495813235 4.88263813568336 4.37403462909176 4.75413258108609 4.59221927962944 5.45035973328386 4.52459395677577 0.276403736136949 0.278234853561825 0.270308331503364 0.280737610157564 0.273403469331613 0.284953766440699 0.276345260524191 0.274154496578543 0.279314440517232 0.284775637859384 0.269217342703694 0.269217342703694 0.276651130811090 0.283427959557542 0.274229996608925 0.269217342703694 0.285215993205479 0.278779752124582 0.280925280936000 4 4 + 12526490 12526949 12526729.364 12524501 12527351 + gene protein_coding_gene FALSE TRUE AT4G24120.1 YSL1 (YELLOW STRIPE LIKE 1); oligopeptide transporter Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL3 (YELLOW STRIPE LIKE 3), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53550.1); similar to YSL6 (YELLOW STRIPE LIKE 6), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G27020.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABD04075.1); similar to putative YS1-like protein; VvYS1 [Vitis vinifera] (GB:AAT09976.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABB76763.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.823453606837641 -7.308314178477 1.62153007108742e-05 0.239872943415962 8.13565289632352 11.4089476086543 -0.823453606837641 0.129124881608044
AT2G35650_at 5.32539581979097 5.98251570986995 4.03245640611241 4.03357320284803 4.4713076594238 4.06360129858711 5.93030048567796 5.84456794354019 6.6901795045767 6.12574992057696 7.26418640611449 7.42223514542687 5.94597961291282 6.60067944637156 6.3503489156326 5.93976651854969 4.95176945832277 6.07124975750806 6.32090201632035 0.260628563754399 0.253926153576074 0.261893025045154 0.262915146715653 0.262064806080906 0.263878047388983 0.25511132355339 0.251810232895750 0.263592434666105 0.252708099858585 0.25287395693421 0.257693187143074 0.256715064136609 0.265448997758206 0.262356915433233 0.251810232895750 0.267457388625461 0.254908065425270 0.251810232895750 2 2 + 14994678 14995231 14994961.909 14992567 14995436 + gene protein_coding_gene FALSE TRUE AT2G35650.1 ATCSLA07 (CELLULOSE SYNTHASE LIKE); transferase, transferring glycosyl groups a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm. similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G03760.1); similar to ATCSLA03 (Cellulose synthase-like A3), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G23480.2); similar to cellulose synthase-like A1 [Physcomitrella patens] (GB:ABD79099.1); similar to glycosyltransferase 1 [Ipomoea trifida] (GB:AAQ62570.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -0.840563627098372 -7.30764012903758 1.62290347331047e-05 0.240059881772085 8.13502993268286 11.3090751764461 -0.840563627098372 0.13464746543574
AT1G02205_at 9.82436464818732 9.81912725580667 10.7224033442142 10.6813170842275 11.2918902822814 10.8153811393694 12.0411067276387 11.9168646416072 10.5229484881338 10.6688931462113 12.1864778497357 12.0030662472808 12.1619890234135 12.0099894450163 12.1571327230388 11.5991092521087 11.4097283629942 12.1820683049481 10.4163788454099 0.0965221744694273 0.09727481916577 0.097063559451557 0.0984903365327029 0.099920246854207 0.105638296870252 0.0974599281279073 0.098369271688809 0.119283826118254 0.106476513964973 0.0980132854719924 0.0969246766490719 0.0984159099942632 0.0981957304757481 0.0965221744694273 0.096810671454549 0.101221473694160 0.0985810911374901 0.108284181557777 1 1|0 +|/ 419126 422222 420696.45 418767 422438 + gene protein_coding_gene FALSE TRUE AT1G02205.1|AT1G02205.2 CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase. similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT1G02190.1); similar to CER1 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66132.1); similar to Os10g0471100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064826.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088)|similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT1G02190.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28316.1); similar to CER1 [Oryza sativa] (GB:AAD29719.1); similar to CER1 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66132.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.70250190101426 7.30242726828997 1.63356721947761e-05 0.241620927432934 8.13020984942935 22.1389412125759 0.70250190101426 0.0855199257662476
AT2G42530_at 11.1395109290597 11.2292616399951 9.00270020836433 9.15907863578757 10.2890090927843 10.0248555885029 9.48761458535177 9.59193558809367 7.09762073514169 8.70291569783276 10.1415470501337 10.3136810832532 9.7940874366077 9.9799964008183 9.83777265002256 9.07114878747734 9.14406485801473 9.17097826448217 7.14498302356372 0.140079134432776 0.140763290726650 0.141968994829283 0.138455579495774 0.141372058116511 0.140715193320962 0.145556704428089 0.142053142322119 0.169661486475780 0.149434515269602 0.137081164315821 0.138886239378178 0.140834585265510 0.138342333457201 0.141758815075441 0.136023877710411 0.142512412712377 0.141497921704767 0.153443617694065 2 2 - 17716304 17716911 17716678.727 17716114 17717023 - gene protein_coding_gene FALSE TRUE AT2G42530.1 cold-responsive protein / cold-regulated protein (cor15b) similar to COR15A (COLD-REGULATED 15A) [Arabidopsis thaliana] (TAIR:AT2G42540.2); similar to cor15b (GB:AAA32774.1); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241) 0.644991638286616 7.29748542691281 1.64374614703281e-05 0.243110055146153 8.12563659834604 18.6555788094244 0.644991638286616 0.058216717586435
AT2G39470_at 9.88332063374387 9.96085708876459 9.1714561366499 9.17262206640575 9.56352373540617 9.41884259774153 10.6428635285828 10.6390587449356 10.5974519561256 10.6168197136010 10.2322016459730 10.4473513999762 10.2689034758231 10.2992310889557 10.4314936446481 10.6336687329649 10.2706124295677 10.3105161868700 10.6473379093908 0.104621895486901 0.101838341288935 0.108725700552404 0.108274457197989 0.0995017125677742 0.111170140686612 0.105424232606195 0.103726513431636 0.106271701376722 0.0985781428416697 0.102760909972993 0.101214155201436 0.102119127427652 0.101839754870748 0.103018428478735 0.0982886176958032 0.111356332473123 0.100465929023694 0.107536455808077 2 0|2 /|+ 16483789 16484699 16484261.6 16483294 16484921 + gene protein_coding_gene FALSE TRUE AT2G39470.1|AT2G39470.2|AT2G39470.3 photosystem II reaction center PsbP family protein|calcium ion binding similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to kinase binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAF30961.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.604351532865508 -7.29517362163387 1.64853126931161e-05 0.243801289418494 8.1234959611329 20.2977099925137 -0.604351532865508 0.0284149061378045
AT1G53180_at 1.31515759922289 1.19190898393932 1.57561845708733 1.15040128975618 2.94887391313057 3.04701950781948 1.4617085664816 0.952989767174225 1.008351818417 1.39191346142167 1.79538206174195 1.47650996523638 2.32450271878232 2.17109318883642 1.62592830666191 1.96469949060545 2.18837056195005 2.09951849725881 1.58701843892999 0.192560539870755 0.194749520929678 0.194403481998264 0.198346230817854 0.199029844735722 0.208081965635883 0.191680619985328 0.201362670562108 0.210488722039898 0.205827540163880 0.190926810998782 0.192302553566245 0.195458728430327 0.193911869072513 0.196995723991347 0.190930266001754 0.200593631044807 0.196936486019515 0.203754201733143 1 1 + 19835728 19836357 19836085.909 19835109 19836563 + gene protein_coding_gene FALSE TRUE AT1G53180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15115.1) 0.788346544352575 7.29480608582025 1.64929339735396e-05 0.243897507600704 8.12315556400676 3.34788234647997 0.788346544352575 0.117934846988269
AT1G10410_at 8.05896917302153 8.32943208055424 8.82845187744475 8.81097213329727 8.7711595685216 8.03969267508016 7.0202937945052 6.91994467505333 6.1841472479366 6.46964768922688 7.09260254149455 6.91418592882924 6.98424761336485 7.1712128433238 6.6157822469783 6.96702521105701 6.79963950609114 6.82462886065689 6.14343051758135 0.200966419001168 0.202859191235219 0.211814945057357 0.220632725691104 0.205972825982504 0.215487723183419 0.214593440092509 0.199974637714729 0.213851363396129 0.203235321151162 0.205664329824573 0.208711376568123 0.199014862677151 0.221657331697267 0.202763304451611 0.205591413723919 0.215437530491245 0.211639098522356 0.210919490474436 1 0|1 /|- 3416894 3417615 3417312.778 3416681 3419640 - gene protein_coding_gene FALSE TRUE AT1G10410.1 similar to CW14 [Arabidopsis thaliana] (TAIR:AT1G59650.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98316.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.842916454264282 7.28821808148683 1.66301883875121e-05 0.245910595686141 8.11705057096206 14.6908182032961 0.842916454264282 0.136106089035879
AT1G50840_at 6.70457674361001 6.57357983386342 6.3446259760521 6.21404364721187 6.88683745739434 6.40894424398038 7.65296344051974 7.1677444035475 7.02347589202041 7.44580169441794 5.59276678954544 6.18829945447232 6.23498415970373 5.9854500818366 6.01714646611303 6.75629063314952 6.61310015468526 6.07820317286388 7.19564053797233 0.223194572795972 0.224747403301627 0.22077297876951 0.227340893349983 0.221480190420321 0.217391247526346 0.216948530799735 0.216171962578241 0.225969208421235 0.218365626894847 0.237051148765789 0.219233476562523 0.223273537676818 0.225721892652934 0.236505975886666 0.216171962578241 0.224393991122736 0.229895980151199 0.217970105671817 1 1|0 +|/ 18847154 18847951 18847479.444 18842775 18848227 + gene protein_coding_gene FALSE TRUE AT1G50840.1 POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation. similar to POLGAMMA1 (polymerase gamma 1), DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT3G20540.1); similar to DNA polymerase [Nicotiana tabacum] (GB:BAE45851.1); similar to DNA polymerase [Nicotiana tabacum] (GB:BAE45850.1); similar to PolI-like DNA polymerase [Oryza sativa] (GB:BAB40805.2); contains InterPro domain DNA polymerase A; (InterPro:IPR002298); contains InterPro domain DNA-directed DNA polymerase; (InterPro:IPR001098); contains InterPro domain 3'-5' exonuclease; (InterPro:IPR002562); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.799731267491415 -7.28565946674144 1.66838252188088e-05 0.246687039685306 8.11467778583329 13.4466242126973 -0.799731267491415 0.122126991419202
AT3G17950_at 5.03240377846202 4.87797220806395 5.01586273286177 4.77395559842597 6.0993898142089 5.63020932711811 4.56680133065933 4.54884242790331 4.49027204314646 4.88743187226274 6.12059268865107 5.57892035871405 5.88482941859103 5.6426601698117 5.68065717803019 5.41129618587672 5.06947626682977 5.5267604774398 4.98739418545865 0.234452316518845 0.234452316518845 0.245721805665381 0.238781004369403 0.25560238528391 0.236351323309467 0.239035421895811 0.240967933900133 0.242363307356234 0.236515704498614 0.235590135101365 0.234452316518845 0.234452316518845 0.259162102066529 0.236657717875912 0.235219442235397 0.242344589761328 0.234452316518845 0.23740801166289 3 0|3 /|+ 6146667 6146964 6146812.1 6146247 6147354 + gene protein_coding_gene FALSE TRUE AT3G17950.1|AT3G17950.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02440.1); similar to Os06g0256800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057317.1); similar to Os02g0733400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048034.1)|similar to Os06g0256800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057317.1) 0.724691245625983 7.28346192043309 1.67300413815226e-05 0.247353661825812 8.11263905873508 10.2695622155207 0.724691245625983 0.0952305558639098
AT3G61770_at 5.98026318078514 6.5281135417492 5.76681849553609 5.56805395579371 5.43219822069611 5.39337507224738 7.15788224296092 7.45671965741944 6.76482500976916 6.17301391374867 6.19339347641669 6.57838432248276 6.00115860599965 6.10577508157557 6.19435289627030 6.29494706994843 5.86002232890556 5.88905634968025 6.40354740399033 0.211839961149601 0.207695736578922 0.217073584674281 0.212838000770483 0.210186161511370 0.210267393718371 0.205540513666367 0.208297922760937 0.225087716152431 0.202792540121109 0.209653687218447 0.203829053205105 0.213233077310356 0.208992951489157 0.218179894446713 0.206705144776503 0.220682934920432 0.205370128350751 0.218417233657073 3 3 + 22875958 22877193 22876398.909 22875518 22877382 + gene protein_coding_gene FALSE TRUE AT3G61770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os05g0534100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056147.1); similar to hypothetical protein DSY2350 [Desulfitobacterium hafniense Y51] (GB:YP_518583.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) -0.774062864543252 -7.28013966387935 1.68001726537485e-05 0.248373752513017 8.10955552525196 12.4538105670215 -0.774062864543252 0.11354000270344
AT2G24600_at 6.4510606247982 6.5295929728894 6.03468035834264 6.32887096185934 5.79836543183362 6.0783882921935 3.66245123391185 3.23218217077602 6.53248042126298 4.49416511823991 6.16858321401214 6.988936157647 3.90002628183282 6.3871929875178 5.97005857545495 5.02549706916796 4.6243071789456 6.0920002918615 4.70854025781289 0.237637824281715 0.239199251552119 0.248005326872779 0.241790039244329 0.240155668559398 0.242606484111454 0.255181772528461 0.272988317229966 0.244801450414973 0.239217024037459 0.237637824281715 0.238715605915197 0.254089545069837 0.238125335550552 0.241335227636956 0.242682598192805 0.245028909622892 0.238645871780487 0.245394540895750 2 2 - 10459524 10460237 10459811 10459195 10461603 - gene protein_coding_gene FALSE TRUE AT2G24600.1|AT2G24600.2|AT2G24600.3 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G10340.1); similar to Ankyrin [Medicago truncatula] (GB:ABE80931.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.745383898789893 7.27829217483958 1.68393089845943e-05 0.248935504719258 8.10784006970418 10.9592675818224 0.745383898789893 0.103291994385237
AT4G34770_at 3.30636558686926 3.52548184157379 2.14913649654957 2.1887138186914 2.56220863682569 2.69251106879183 1.96663512401686 2.20634128940978 3.27122088838688 3.23322011990704 6.39429153882805 5.53505069450979 4.8924516654061 5.84226835116585 6.80138864425958 5.44722626545821 4.69630464741221 6.20671943459055 5.7309171134154 0.251791101371508 0.253986172416844 0.281108532342861 0.266735872780586 0.253085334489163 0.257614745684644 0.256663420183276 0.253798500777277 0.255565133432287 0.256521807704215 0.261092213570951 0.252507897858458 0.258024884140906 0.281580084910509 0.258000189291781 0.259746412206428 0.276218743897654 0.260545146107636 0.251791101371508 4 4 + 16591364 16591639 16591515.364 16591234 16591897 + gene protein_coding_gene FALSE TRUE AT4G34770.1 auxin-responsive family protein similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to hypothetical protein [Malus x domestica] (GB:CAB07785.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.647723246357276 7.27301478492917 1.6951643612472e-05 0.250579195879561 8.10293700364865 7.47738191406114 0.647723246357276 0.0609427833304574
AT2G14560_at 12.2650090244212 12.1662339784372 12.4254084158804 12.2367205136852 11.6899353979802 10.9105736041073 8.16436202779513 7.38914731782215 10.6307607782571 5.92435311580252 7.87772419666101 9.35963772326367 6.31050831197658 9.1497304448331 4.294364963077 8.18418882316186 9.02424559893421 9.983389439292 6.74614568099068 0.229287816706316 0.227070626129243 0.228865336760197 0.227813011854 0.226578142451411 0.232627096210021 0.227112468334341 0.234402103344184 0.223737746735605 0.254272308944902 0.225151759812085 0.223737746735605 0.256444143820820 0.226497977045201 0.239296148961083 0.227308146287309 0.227870454006246 0.223737746735605 0.244036590864827 2 2|0 +|/ 6221256 6222123 6221615.8 6221054 6222983 + gene protein_coding_gene FALSE TRUE AT2G14560.1|AT2G14560.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33840.1); similar to Protein of unknown function DUF567 [Medicago truncatula] (GB:ABE88873.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 1.03767927921377 7.27082776353784 1.69984324901684e-05 0.251253830637179 8.10090387678892 18.8009538913495 1.03767927921377 0.193768858586164
AT1G60690_at 4.97613930508292 5.10918126440683 4.60388561308491 4.36374042392273 5.4690931490434 5.77145039811121 7.09024556840827 7.10034297533234 5.08857368874537 6.92841307526538 5.5941298282022 5.93090628969061 5.8374812683408 6.08462475990891 5.70976560305968 5.57348183063843 6.1573467723947 5.70274355273605 6.40210027776764 0.234292773214170 0.241186797929274 0.249913235080746 0.255336306927893 0.230950662425996 0.250298977609755 0.239755153427257 0.230950662425996 0.245922309764767 0.237582961384227 0.23730470688347 0.233348203251973 0.233059098385554 0.233346638550184 0.234648799802087 0.230950662425996 0.236527692914429 0.23868554000249 0.237727240454503 1 1 - 22353557 22354277 22353926 22353557 22355333 - gene protein_coding_gene FALSE TRUE AT1G60690.1 aldo/keto reductase family protein similar to ATB2, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G60710.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.6664102873692 -7.26964969893081 1.70236933889423e-05 0.251610188288567 8.09980841037802 11.5422626715312 -0.6664102873692 0.0706969580478567
AT1G03850_at 10.5198246743272 10.6674284085419 10.7408568157289 10.9138773864451 9.56790118338724 9.64166792164436 3.66785649695295 3.85005129014584 6.02689489037892 4.558716286964 3.26872370941469 3.55027094368358 4.2896301020102 3.58276075691953 2.69083498454551 2.59385099946417 4.09899873836062 4.31410833983512 5.38796863073046 0.253294699062406 0.253471544156134 0.252817144811164 0.252957955648083 0.263229359943837 0.252641376166747 0.245166649984491 0.249179358432058 0.266669645703049 0.264546707843793 0.243082800236816 0.255057310578074 0.243082800236816 0.248812412327935 0.257604357272904 0.251095514960345 0.246321807081409 0.245121819318045 0.294463475348933 1 1 - 977246 977647 977454.636 976096 977760 - gene protein_coding_gene FALSE TRUE AT1G03850.1|AT1G03850.2 glutaredoxin family protein Identical to Monothiol glutaredoxin-S13 (AtGrxS13) (GRXS13) [Arabidopsis Thaliana] (GB:Q84TF4;GB:Q94CA3;GB:Q9ZWA7); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G28480.1); similar to Os01g0667900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043812.1); similar to Glutaredoxin [Medicago truncatula] (GB:ABE86256.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905)|Identical to Monothiol glutaredoxin-S13 (AtGrxS13) (GRXS13) [Arabidopsis Thaliana] (GB:Q84TF4;GB:Q94CA3;GB:Q9ZWA7); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G28480.1); similar to Os01g0667900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043812.1); similar to glutaredoxin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79508.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.631953164198728 7.26773209452845 1.70648983830936e-05 0.252202133203741 8.09802480819001 13.1327699843818 0.631953164198728 0.0520199713182382
AT1G59580_at 8.48449340537 8.32028985984543 8.63485632003752 8.4850269938306 8.59946895249902 8.56955890872776 7.17168555373965 6.90941115796187 7.48740373146683 7.38796973989264 8.05468111619717 7.72145572033446 7.46115063877687 7.99202487388196 7.69303975143634 7.89387041167487 7.85696728597788 8.1238530410056 7.35651410915857 0.174210473114045 0.169902377218551 0.172502315043499 0.171141209874174 0.169032554009953 0.181391390525032 0.180384132654748 0.173914106285232 0.180678226131547 0.177392857578125 0.169285039293845 0.164671482494313 0.173609950931401 0.171236336701469 0.169116823052345 0.166006490496275 0.175352428925684 0.165590879257375 0.173934057512069 1 1 + 21888809 21889351 21889125.182 21887708 21889714 + gene protein_coding_gene FALSE TRUE AT1G59580.1|AT1G59580.2 ATMPK2 (MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase encodes a mitogen-activated kinase involved in innate immunity Identical to Mitogen-activated protein kinase 2 (EC 2.7.11.24) (MAP kinase 2) (AtMPK2) (MPK2) [Arabidopsis Thaliana] (GB:Q39022;GB:Q9LQ58); similar to ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G10210.2); similar to double HA-tagged mitogen activated protein kinase 1 [synthetic construct] (GB:ABG54328.1); similar to Mitogen-activated protein kinase homolog NTF3 (P43) (GB:Q40517); similar to double HA-tagged mitogen activated protein kinase 2 [synthetic construct] (GB:ABG54329.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain p38 MAP kinase; (InterPro:IPR008352); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 0.644879480474557 7.26594595697712 1.71033749146828e-05 0.252753674489183 8.0963629869333 15.7769786682098 0.644879480474557 0.0597211872358215
AT1G48780_at 2.77893851174270 2.54262817539215 2.46021353484777 2.05357696450997 2.70539635598700 2.13410958119685 3.93587099115073 3.37735893252217 3.98475011926485 4.17081394694756 2.96416453252979 3.12194358370872 3.3276919382499 3.09896530840271 2.87910969764343 3.27119295556441 2.81225491431549 3.2270685069621 4.16603344781880 0.214041562145712 0.213083280522431 0.219048304953138 0.216317689738553 0.210372473681274 0.211322266938898 0.215921216726053 0.216332482063883 0.217403706481093 0.216547864762184 0.218703674324072 0.211703024673197 0.209808292160900 0.208818912763039 0.210467577183383 0.214987106361876 0.217606880096206 0.211867179084074 0.224895766531962 1 1 + 18045814 18046339 18046048.727 18045657 18046412 + gene protein_coding_gene FALSE TRUE AT1G48780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18300.1) -0.919887642619102 -7.26589607543307 1.71044507883776e-05 0.252753674489183 8.09631657026643 6.34601068142657 -0.919887642619102 0.160437650158896
AT4G22380_at 5.97054276984057 6.11934617826151 6.52837781738377 6.45202715832942 6.19231625968817 6.49183387091089 5.7900038645968 6.26047537980486 4.42554070054943 4.87046501468928 5.7996855313134 6.13512074033151 5.66743194648253 5.50007026999994 6.17590477480386 5.82490796035946 6.25356866211139 5.070149800322 4.8335545878466 0.198926659287813 0.200706684703939 0.194694295189078 0.204008409231842 0.197259799209071 0.205107309082379 0.214526730327733 0.191434823344662 0.202370439029174 0.198279321835722 0.200228435902001 0.190165140722042 0.191858194301580 0.202645075088511 0.200893731200411 0.195436535751293 0.194499942662299 0.202954367717583 0.199070400334265 4 4 - 11812128 11812908 11812571.364 11811762 11813012 - gene protein_coding_gene FALSE TRUE AT4G22380.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); similar to ribosomal protein L7 [Hyacinthus orientalis] (GB:AAT08750.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) 0.737274127402932 7.2651155715062 1.71212946235724e-05 0.252984249357905 8.09559023288307 11.4822196098906 0.737274127402932 0.100762721757165
AT4G20320_at 1.81218381614296 1.59238239924087 2.30849620620212 2.34156654448889 1.66025203284180 1.97590510707683 5.95371209734424 5.70996681778702 1.26140792441260 1.27958130426304 1.61239870060243 1.26686618080554 1.55324938188214 1.74410558285525 1.66579080636862 1.55202857438116 1.89901785627773 1.67923951535793 1.33986579895356 0.239401010546392 0.242279976448715 0.243869827870478 0.241162967851626 0.249635824434270 0.239101192422788 0.274927160584692 0.273251644144753 0.242375520836396 0.247222307389945 0.24543298331096 0.247026970094930 0.245140972757097 0.253503496835023 0.240249938502540 0.239101192422788 0.239154679155426 0.242193369871884 0.253118226614959 4 4|0 +|/ 10977948 10978704 10978298.875 10974473 10979475 + gene protein_coding_gene FALSE TRUE AT4G20320.1|AT4G20320.2 CTP synthase| similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3G12670.1); similar to putative CTP synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61286.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.683768788851537 -7.26386692211105 1.71482784705526e-05 0.253365814402415 8.0944280478691 4.3769108363203 -0.683768788851537 0.0790113347182562
AT1G21680_at 11.2307818985667 11.3634880515233 11.6673596997423 11.5809687791586 11.619381566645 11.7094934198497 10.1960311179547 10.5606302019913 9.99013972519811 9.89261758404526 9.9744031311228 10.0565715882631 10.5770392945964 10.4796579730387 10.1489822310222 10.4887184033911 10.7320636111591 10.5907792866886 9.68794542871617 0.091178162377273 0.0911463700378427 0.0946074954513747 0.094021879335083 0.0932483237972789 0.091475650369809 0.0926342704559677 0.0895979776067973 0.097826734095734 0.0944158312242223 0.0900111622801144 0.0940217679169385 0.089775547054923 0.0914664225448079 0.0887401787681532 0.0893405129870672 0.0927192184432066 0.0928264860491807 0.0948074435237672 1 1 + 7614557 7615090 7614831.636 7612994 7615328 + gene protein_coding_gene FALSE TRUE AT1G21680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21670.1); similar to WD40 domain protein beta Propeller [Solibacter usitatus Ellin6076] (GB:YP_828764.1); similar to Os03g0840200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051846.1); similar to Os07g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060406.1); contains InterPro domain TolB, C-terminal; (InterPro:IPR011042); contains InterPro domain WD40-like Beta Propeller; (InterPro:IPR011659) 0.665347038048504 7.26168981852264 1.71954360283849e-05 0.254045371883358 8.09240113776975 21.3599807682107 0.665347038048504 0.0705347866330492
AT1G78030_at 2.13125099113687 1.85000667735178 1.16265831058418 1.02206668371698 0.744253495930686 0.927758051515986 1.10052103423256 1.13709394282306 1.09146773267329 1.36212323178832 0.697813297235124 1.08252916836180 0.249190932556286 1.11329002016875 1.2079311793891 0.76444462751747 0.879851046798843 0.930915143694282 2.27519421992220 0.245788865054941 0.243844469477136 0.228957640646169 0.226778802972851 0.226862776856716 0.229958188909701 0.226778802972851 0.227349819955873 0.23176466247633 0.230822540771501 0.228079757498346 0.226778802972851 0.233331705787474 0.229948883780300 0.227513712768737 0.23349426452247 0.231446843189524 0.235166394973183 0.228007648528611 1 1|0 +|/ 29347885 29348510 29348208.8 29347051 29348718 + gene protein_coding_gene FALSE TRUE AT1G78030.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G37900.1) -0.650525038555921 -7.25499834136687 1.73412529075403e-05 0.256182329203093 8.08616680926444 2.48045485095808 -0.650525038555921 0.0633190601069705
AT2G31200_at 8.92532468496649 9.3857718937799 10.0547310855963 10.1323159570453 9.84878002066134 9.29105064425893 9.617456493436 9.57144920783364 7.53422938577828 8.50511610469595 9.33302373952463 9.37140155798545 8.94240096704159 9.10546556271474 9.42827044719626 9.52661221669483 8.88158772462119 9.23329720374661 8.16460463227794 0.144158624605796 0.135396262748752 0.146162811660977 0.140467126476854 0.140665383554953 0.144674005630530 0.142032744351399 0.13712265721161 0.183743877987588 0.136768651624238 0.135396262748752 0.138115817056728 0.141117166011000 0.150841412373090 0.137356023472268 0.135396262748752 0.157215070286883 0.142210585782263 0.148353341637745 2 0|2 /|+ 13301557 13301968 13301758.8 13301063 13302487 + gene protein_coding_gene FALSE TRUE AT2G31200.1 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6); actin binding Encodes actin depolymerizing factor 6 (ADF6). Identical to Actin-depolymerizing factor 6 (ADF-6) (AtADF6) (ADF6) [Arabidopsis Thaliana] (GB:Q9ZSK2;GB:Q93VZ4;GB:Q9SJX6); similar to ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) [Arabidopsis thaliana] (TAIR:AT3G46010.2); similar to actin depolymerizing factor [Populus x canescens] (GB:AAD23407.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.808246455038195 7.25410081310511 1.73609122269854e-05 0.256455395417029 8.08533008378357 18.2512303992929 0.808246455038195 0.126129401745787
AT4G17510_at 6.88808906508327 6.91308877289647 7.11410287773993 6.93756232215703 7.18844139498529 7.01550903264565 6.45289069618532 6.05157686440391 5.07091370953342 5.36477057615619 6.34505162369866 6.54669942410371 6.02895899636833 5.39656737815863 6.1049295861169 5.98204569894894 6.54525973693546 5.54182431348997 5.0789601395836 0.264103939383798 0.265870251515334 0.268647812331921 0.262335977491194 0.259505044753869 0.282508115486092 0.262927618934505 0.268042577765721 0.275080519157300 0.26645003962863 0.266978665666206 0.261974580752415 0.259655977590450 0.270920475929297 0.274575599402160 0.261164364554386 0.268188174319442 0.272079925489687 0.259505044753869 4 4|0 -|/ 9767146 9768355 9767640.143 9766984 9768783 - gene protein_coding_gene FALSE TRUE AT4G17510.1 ubiquitin carboxyl-terminal hydrolase, putative / ubiquitin thiolesterase, putative similar to ubiquitin carboxyl-terminal hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G16310.1); similar to ubiquitin carboxyl-terminal hydrolase, putative [Brassica oleracea] (GB:ABD65144.1); contains InterPro domain Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; (InterPro:IPR001578) 0.688680755104784 7.25193267265238 1.74085017573525e-05 0.257140979457853 8.08330832095088 12.4366402465048 0.688680755104784 0.0816755584043871
AT2G28450_at 4.47086561257296 4.85421573302026 3.21219562596679 3.58352751930542 3.97989269821977 4.23101113362284 4.23817183905411 4.5783373597988 3.75731151766136 4.50684078557047 3.10502885136498 3.48175807137664 3.34008341138652 3.36543853150912 3.75321931516409 3.58448095548120 3.69329264224601 3.66930152415896 4.5807592730768 0.208473728916364 0.208473728916364 0.216641627502117 0.208473728916364 0.213817502268594 0.208473728916364 0.218793916571274 0.220470097075906 0.225474527839228 0.215756363636721 0.210867461200637 0.214797031978216 0.210230292733653 0.208473728916364 0.211004023350765 0.213824849426694 0.212884881552804 0.209420115749267 0.221535898760860 2 2|0 -|/ 12169302 12169781 12169550.6 12169128 12172971 - gene protein_coding_gene FALSE TRUE AT2G28450.1 zinc finger (CCCH-type) family protein similar to RNA methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G21300.1); similar to Os04g0105000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052005.1); similar to OSJNBa0094O15.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD39345.2); similar to tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes (ISS) [Ostreococcus tauri] (GB:CAL50305.1); contains InterPro domain Methyltransferase small; (InterPro:IPR007848); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain (Uracil-5)-methyltransferase; (InterPro:IPR010280); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.783151335549883 -7.24949970539123 1.74620711348578e-05 0.25791479066185 8.0810387642073 8.03388349266453 -0.783151335549883 0.117832022139641
AT4G25630_at 4.79873833454210 5.03758381758356 4.03696500816624 3.98203094057208 3.26650922203586 3.25638416458208 4.64844502620167 4.79814612175807 3.71375274654843 4.07251842445715 3.77397394228829 4.24413938859905 3.53993122182188 3.70542722612626 4.47324935115677 3.65429521260708 3.18063128453078 3.50146974573717 3.69504249454849 0.233711172414935 0.233750247723532 0.232036842920680 0.228115648994776 0.230306896108528 0.234492173942578 0.229636904619773 0.230385755640729 0.234226207140764 0.228115648994776 0.241114022483889 0.228115648994776 0.237913800551622 0.236680482298727 0.228115648994776 0.236879521691521 0.236332487486735 0.232455518483160 0.228812651210795 4 4|0 +|/ 13074978 13076159 13075479.667 13074142 13076432 + gene protein_coding_gene FALSE TRUE AT4G25630.1 FIB2 (FIBRILLARIN 2) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.2f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated. Identical to rRNA 2'-O-methyltransferase fibrillarin-2 (EC 2.1.1.-) (Fibrillarin- like protein 2) (FIB2) [Arabidopsis Thaliana] (GB:Q94AH9;GB:Q9SZZ1); similar to FIB1 (FIBRILLARIN 1) [Arabidopsis thaliana] (TAIR:AT5G52470.1); similar to tobacco fibrillarin homolog [Nicotiana tabacum] (GB:BAE91898.1); contains InterPro domain Fibrillarin; (InterPro:IPR000692) -0.626610437379285 -7.24746418419512 1.75070256547292e-05 0.258561261894696 8.07913927112032 8.02122244282676 -0.626610437379285 0.0497296150273791
AT1G53110_at 3.32199491648766 3.67936291747318 3.74423582063009 4.10159333754307 4.44821097763976 4.16821699846138 3.11463130010582 2.93835121085993 2.71061199389545 2.42940522528366 2.83882113767588 3.31045725439756 2.84967454418502 3.11721500803526 2.52889679626428 2.74857181046767 3.37028935525166 3.35506770351502 1.99263585253137 0.260765099739037 0.247617450676522 0.268021258896574 0.251721464411858 0.262532942597587 0.250742501471445 0.247219935279732 0.250530247796073 0.258036404223622 0.256195571352684 0.262811672234488 0.256173174347406 0.251890543119054 0.250303132412902 0.253647278338002 0.247219935279732 0.250804051803183 0.251861468452952 0.265222603918557 1 1 + 19795185 19795660 19795439.636 19793857 19796157 + gene protein_coding_gene FALSE TRUE AT1G53110.1 chorismate mutase similar to PPI2 (PROTON PUMP INTERACTOR 2) [Arabidopsis thaliana] (TAIR:AT3G15340.1); similar to Chorismate mutase; Prefoldin; tRNA-binding arm [Medicago truncatula] (GB:ABE89096.1); similar to Os09g0346400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062938.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701) 0.74465118732874 7.23843443933028 1.77079532274638e-05 0.261511053263185 8.07070539703982 6.38578729746388 0.74465118732874 0.104535270968101
AT1G10070_at 6.19237557866725 6.57617187159032 6.79075306953948 6.70245968558877 8.18375651663104 6.62186010860288 2.40100682197235 2.52455386864189 3.00943120796909 1.92076368718987 2.55579278737744 1.74899811185130 2.32561668994741 2.84775944638462 1.86544276750968 2.54582619871657 2.16682182082247 2.84861312481725 1.95865251752171 0.355724744725763 0.334471569092493 0.341398456085613 0.334018564987507 0.350686274487076 0.361060565462527 0.319883740110340 0.319883740110340 0.320343077753758 0.32309045122972 0.319883740110340 0.319883740110340 0.32108929388308 0.321437356955439 0.344552779750669 0.319883740110340 0.319883740110340 0.319883740110340 0.344842037472906 1 1 + 3289219 3290093 3289662.545 3288089 3290473 + gene protein_coding_gene FALSE TRUE AT1G10070.1|AT1G10070.2|AT1G10070.3 ATBCAT-2; branched-chain-amino-acid transaminase/ catalytic|ATBCAT-2; catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast precursor (EC 2.6.1.42) (Atbcat-2) (BCAT2) [Arabidopsis Thaliana] (GB:Q9M439;GB:O80598); similar to ATBCAT-3, branched-chain-amino-acid transaminase/ catalytic [Arabidopsis thaliana] (TAIR:AT3G49680.1); similar to ATBCAT-5, branched-chain-amino-acid transaminase/ catalytic [Arabidopsis thaliana] (TAIR:AT5G65780.1); similar to branched-chain amino acid aminotransferase [Capsicum annuum] (GB:AAK57535.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786)|Identical to Branched-chain-amino-acid aminotransferase 2, chloroplast precursor (EC 2.6.1.42) (Atbcat-2) (BCAT2) [Arabidopsis Thaliana] (GB:Q9M439;GB:O80598); similar to ATBCAT-5, branched-chain-amino-acid transaminase/ catalytic [Arabidopsis thaliana] (TAIR:AT5G65780.1); similar to branched-chain amino acid aminotransferase [Capsicum annuum] (GB:AAK57535.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786) 1.35900335370369 7.23339046612478 1.78212684013818e-05 0.263166670483204 8.06598889816733 8.0788128598152 1.35900335370369 0.279571915828208
AT4G27410_at 9.3906239115367 9.61770068881741 10.3304592491418 10.5014672789111 10.4952998390546 10.0927095013362 9.3442553270519 9.1230642161449 7.72584924413335 9.2585588145578 8.60913686896553 7.77753542084318 9.74876186181872 8.54806227521377 7.35902615344542 9.22352968657541 10.7549591044183 9.46829156711584 8.49285572153934 0.136848691945949 0.138727059163814 0.148434309763935 0.140689440455551 0.145036980997786 0.145299446912648 0.146290611213547 0.136848691945949 0.149080015690223 0.146918574119236 0.144471298867257 0.143653615791679 0.139948324662102 0.149616114499063 0.153116376773985 0.136848691945949 0.136848691945949 0.142815532576789 0.155016611248894 4 4 - 13708000 13708577 13708184.818 13707246 13709155 - gene protein_coding_gene FALSE TRUE AT4G27410.1|AT4G27410.2|AT4G27410.3 RD26 (RESPONSIVE TO DESSICATION 26); transcription factor|RD26 (RESPONSIVE TO DESSICATION 26) Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response. similar to ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15500.1); similar to NAC-domain protein 485 [Brassica napus] (GB:AAP35056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441)|similar to ANAC019 (Arabidopsis NAC domain containing protein 19), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52890.1); similar to ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15500.1); similar to NAC-domain protein 485 [Brassica napus] (GB:AAP35056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.714907269222951 7.2295183949034 1.79087850769817e-05 0.264441120446712 8.06236559994321 18.5762395651875 0.714907269222951 0.0934834977476348
AT1G13570_at 5.38203326166799 5.36747940957644 5.09741321051308 5.37950875251395 6.28815936985144 6.13513242539531 3.90707707134421 4.36944329148459 4.57690093788972 4.90349645713092 5.79733147734983 5.24058672342112 5.19707040153466 5.15050608785688 5.57613277514665 5.32426360125006 5.10592612638241 5.21664028353086 5.05805328424591 0.229869921217108 0.215573053101738 0.216205555914378 0.211502572413329 0.215191637940162 0.216686751034642 0.212895262745005 0.222277907847927 0.226802009203846 0.219163978440044 0.212681671340279 0.214941979856231 0.216356037741398 0.214687354030684 0.208891238755677 0.212882190416528 0.215853686628781 0.215277070031609 0.221846333286340 1 1|0 -|/ 4642560 4643171 4642894.6 4642343 4644419 - gene protein_coding_gene FALSE TRUE AT1G13570.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56370.2); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85825.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.724226069593507 7.22211340028684 1.80774422568068e-05 0.266913434921753 8.05543002697104 10.326884554534 0.724226069593507 0.0974329227311852
AT2G41210_at 4.22862084899732 4.22795517344612 4.35127653436579 4.23478099774852 4.43748703682667 4.13125147267933 5.05013312316068 4.24611624292775 3.88741963997984 4.8380590226143 2.48510185609762 2.13013710059958 3.32104940442686 2.92887230034319 2.24039467211161 3.07447157623852 3.74643952203222 3.04595106935783 4.71990164166957 0.247333555032766 0.244972468655362 0.253121733132594 0.258847365136554 0.249396164033508 0.255020255260053 0.249314416716272 0.243690004417757 0.243535038391182 0.245405981421963 0.248795743476786 0.250799926243925 0.247242807873093 0.258492885885615 0.255014665798887 0.243535038391182 0.256115876372736 0.248227866699397 0.244272628540579 2 2|0 +|/ 17182837 17183608 17183346.3 17180491 17183885 + gene protein_coding_gene FALSE TRUE AT2G41210.1 phosphatidylinositol-4-phosphate 5-kinase family protein Identical to Phosphatidylinositol-4-phosphate 5-kinase 5 (EC 2.7.1.68) (AtPIP5K5) (1-phosphatidylinositol-4-phosphate kinase 5) (PtdIns(4)P-5-kinase 5) (Diphosphoinositide kinase 5) (PIP5K5) [Arabidopsis Thaliana] (GB:Q9SLG9); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G07960.1); similar to ATPIP5K1 (Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase 1), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT1G21980.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96031.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABD28331.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.879874291915763 -7.21676069861038 1.82004189478749e-05 0.268710985346426 8.05041146241967 8.04012548997177 -0.879874291915763 0.150248428848845
AT3G48110_at 8.13163753821826 8.05773133187 7.29597337442668 7.15511827409417 7.44441075302962 6.98977201054543 8.34402650576058 8.23701186329194 7.91550396017592 8.35776455229741 7.60688067422727 8.06298623759904 7.48245385195526 7.84776025276128 8.35871585599827 7.94847133009347 7.6402818863749 7.54841023681629 8.40269826539943 0.167848784338378 0.166229090053424 0.168597409283446 0.165386685030496 0.163596036407148 0.178895973081094 0.161412827560461 0.165168875971256 0.183425678075642 0.166816155516376 0.17306969063767 0.165652314281829 0.161412827560461 0.166338049598061 0.175847539422533 0.16303090534771 0.170907096439576 0.164057700636856 0.161412827560461 3 3 + 17780834 17781915 17781478.091 17773986 17782131 + gene protein_coding_gene FALSE TRUE AT3G48110.1 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) glycine-tRNA ligase Identical to Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase 2) (GlyRS 2) (GLYRS-2) [Arabidopsis Thaliana] (GB:Q8L785;GB:O23150;GB:Q9SU73); similar to Glycyl-tRNA synthetase (GlyRS) [Includes: Glycyl-tRNA synthetase alpha chain (Glycine--tRNA ligase alpha chain); Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain)] [Frankia alni ACN14a] (GB:YP_712250.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52576.1); similar to Glycine--tRNA ligase [Frankia sp. CcI3] (GB:YP_480382.1); contains InterPro domain Heterodimeric glycyl-transfer RNA synthetase; (InterPro:IPR006194); contains InterPro domain Glycyl-tRNA synthetase, beta subunit; (InterPro:IPR002311); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Glycyl-tRNA synthetase, alpha subunit; (InterPro:IPR002310) -0.692305212661958 -7.19969668907978 1.85984994773425e-05 0.274569647784007 8.03438357516799 15.7256188564142 -0.692305212661958 0.0853864419296062
AT1G78970_at 3.11216650936464 4.11221662186058 2.40999731076477 2.83213642049837 2.87824193594282 3.11259195834643 4.65372926834928 4.40212928577055 2.27970284572648 4.38359402780043 7.87489578120123 7.41868449903768 7.26640674251324 8.56525742467509 8.23036579446348 8.0079090249724 7.18972306887641 8.41047373289512 6.92955870794234 0.245195396889012 0.246788760043499 0.250876081155736 0.248672478766607 0.248472376139106 0.248978642262745 0.251309955504082 0.245004898668065 0.254676873050313 0.239191669828380 0.24170772608664 0.243976157157009 0.2455840776349 0.243371498883788 0.244462265346859 0.248263436257954 0.262106546172680 0.242789766951135 0.239191669828380 1 1|0 +|/ 29711521 29712550 29712030.889 29707955 29712737 + gene protein_coding_gene FALSE TRUE AT1G78970.1|AT1G78970.2 LUP1 (LUPEOL SYNTHASE 1); lupeol synthase Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar to lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative [Arabidopsis thaliana] (TAIR:AT1G66960.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to pentacyclic triterpene synthase [synthetic construct] (GB:AAG41762.1); similar to beta-amyrin synthase [Medicago truncatula] (GB:CAD23247.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 1.03884706657071 7.19624604503033 1.86801302625088e-05 0.275756082935155 8.03113706490525 9.63985934839672 1.03884706657071 0.197048717052858
AT3G13800_at 6.02472185041912 6.13319267061254 5.01031463092126 4.74084719032259 5.41828591311550 4.80699924791219 6.21480011194909 6.6855509317913 5.46252527476558 5.76335725894081 4.98842368925197 5.71199154829487 5.09816595895039 5.79759940140174 5.28167297803061 5.13741838226003 4.49090308097135 5.01084895744243 5.64732408333729 0.265685627447403 0.246623579249714 0.263961534298661 0.251000736906948 0.248997551938095 0.258788602540706 0.255063229498897 0.244995093606579 0.254662021959478 0.246366392521980 0.252772430342533 0.249222552201913 0.24787811970634 0.253974914234309 0.244995093606579 0.244995093606579 0.253682709634026 0.254382863853360 0.244995093606579 3 3|0 +|/ 4539794 4541337 4540726.5 4538774 4541494 + gene protein_coding_gene FALSE TRUE AT3G13800.1|AT3G13800.2 metallo-beta-lactamase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30300.1); similar to Beta-lactamase-like [Medicago truncatula] (GB:ABE79762.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30300.1); similar to hydrolase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23415.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) -0.852614425865463 -7.19345385802045 1.87464660155079e-05 0.276716584854913 8.0285087302496 11.0363541710088 -0.852614425865463 0.142668467036724
AT2G43020_at 9.25327121919494 9.5990910386313 9.47277475695556 9.33103425261007 10.1604595837578 9.87979945735582 8.71726165061317 8.66342682599734 8.99271597402751 8.80124518847493 9.74991852676304 9.27345009496987 9.18534364063606 9.613601217275 9.28817131345293 9.1928659923402 9.17987008242551 9.7256025698534 8.27470087315302 0.091330492416566 0.0869808911764906 0.0915280776668612 0.0875068697808183 0.0881675635538857 0.0900266530783852 0.0925073238331646 0.0920274312484229 0.0986985579435911 0.0903414174157714 0.086804495278936 0.0883241231829465 0.0904665476340514 0.0906566248931031 0.0955828910558638 0.0887062200809993 0.107906986385004 0.0967042952092927 0.0936119433484915 2 2 + 17901026 17901450 17901222.091 17898580 17901712 + gene protein_coding_gene FALSE TRUE AT2G43020.1 ATPAO2 (POLYAMINE OXIDASE 2); amine oxidase similar to ATPAO3 (POLYAMINE OXIDASE 3), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G59050.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); similar to Os04g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053923.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) 0.682151623444991 7.18932549827178 1.88450104081496e-05 0.278152353624288 8.02462045449032 18.4299683189393 0.682151623444991 0.0814184975475872
AT1G76040_at 3.64476235177995 3.66320423823649 5.18679941518471 6.24718981908945 2.82519909258477 3.13232443560557 2.10896706105307 1.66315480171136 2.38843823417052 1.92342057675602 2.87121272668076 3.64261048926730 2.25254741078720 3.01078783094276 2.82967003998794 2.90114012530519 2.41609415926115 2.45214745618641 2.39021429096506 0.215113085263626 0.233253702376836 0.250051090242653 0.240419857317402 0.216994219801491 0.222758788645665 0.212383400866425 0.221481324283591 0.230449032376899 0.218432558045178 0.213219441375740 0.218002320391096 0.213761500666651 0.218710842488768 0.214267922251289 0.215695567712925 0.21331573319392 0.217413510633035 0.216318614398829 1 0|1 /|+ 28544430 28545308 28544771.875 28542567 28545531 + gene protein_coding_gene FALSE TRUE AT1G76040.1|AT1G76040.2 CPK29 (calcium-dependent protein kinase 29); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to calcium-dependent protein kinase [Solanum lycopersicum] (GB:CAC87494.1); similar to calcium-dependent protein kinase [Nicotiana tabacum] (GB:AAC25423.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G20410.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to Ca2+-dependent protein kinase [Mesembryanthemum crystallinum] (GB:AAD17800.1); similar to calcium-dependent protein kinase [Solanum lycopersicum] (GB:CAC87494.1); similar to calcium-dependent protein kinase [Nicotiana tabacum] (GB:AAC25423.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.07042899496302 7.18824947901089 1.88707864712621e-05 0.278513937529358 8.0236065838167 6.07447547545544 1.07042899496302 0.206061708722984
AT2G45560_at 7.3892251926625 7.78697449369256 7.81352637884768 7.5054802904903 8.21646908633012 8.18356391525899 8.11153337301728 8.25878746011684 5.29902983401128 6.00812478830681 6.40679563076777 6.28041378739571 7.29559093481885 7.36953748424996 6.69623889448068 6.71028874066595 7.36637762212747 6.88287417765927 5.22505271928801 0.159352540865094 0.156479193606909 0.162712404670274 0.161661712899751 0.158311990082992 0.168995012629924 0.157436258975072 0.161818645777219 0.18147466683905 0.163618885933379 0.158342366953844 0.168072484697943 0.160645354115355 0.161835362949077 0.157918961266364 0.160989885747635 0.166303944478137 0.169771941390599 0.165302341087964 2 0|2 /|- 18784355 18784848 18784645.1 18783126 18785584 - gene protein_coding_gene FALSE TRUE AT2G45560.1|AT2G45560.2 CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1); heme binding / iron ion binding / monooxygenase cytochrome P450 monooxygenase Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); similar to CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45550.1); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45570.1); similar to CYP76C6 (cytochrome P450, family 76, subfamily C, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G33720.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45570.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.70420433317241 7.18609173461326 1.89225895331727e-05 0.279259576330562 8.02157293378555 14.1015702435801 0.70420433317241 0.0908929842065132
AT1G68400_at 3.39047471606976 3.7828470829088 2.16751050597076 1.99895554383499 2.2020979091955 2.70390582858123 3.48936429745967 4.00075607235392 3.6902348401704 3.6344475769084 3.69496716962099 4.32069047212506 3.59387061329636 3.95173840777522 3.34841943709816 3.20892197919358 2.38869843543896 3.31434095626634 4.05324774405944 0.24678826968523 0.24680516198494 0.241547828593797 0.248437437220780 0.24485216308118 0.246865025949754 0.246436639240344 0.242627562646926 0.248480312478888 0.24249606590662 0.246335435702033 0.242172723375566 0.246351754031773 0.241547828593797 0.248722077627862 0.241547828593797 0.248371875350397 0.248485500840393 0.250282840504196 1 1 - 25650069 25650630 25650393 25649702 25652609 - gene protein_coding_gene FALSE TRUE AT1G68400.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G26730.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82079.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.856340274248332 -7.17989570627508 1.90721950022683e-05 0.281448381648474 8.01572929531321 6.60216365499579 -0.856340274248332 0.144342485754663
AT1G55610_at 2.34653017478324 2.31142370720822 3.08622051895845 2.88854033908966 2.66267779712636 2.92717732616353 1.69383031066886 1.92123560201534 1.70770142582013 1.51315026433714 2.25828018953187 1.53464158440267 2.24359951332147 1.72959140933808 1.73588231875229 1.98268635231698 2.36433237984770 1.79529826390613 1.18072879879853 0.236734643676172 0.230471055640468 0.235709995160858 0.241866263819549 0.238327826676345 0.237733291987409 0.232966986082679 0.230628480284837 0.229740447945301 0.232011630786978 0.2285132694668 0.232947786440972 0.234737750751087 0.229784242098629 0.233960632749567 0.231274647867142 0.2285132694668 0.235155102267661 0.238124179838952 1 1 - 20783565 20784107 20783801.636 20783540 20787040 - gene protein_coding_gene FALSE TRUE AT1G55610.1 BRL1 (BRI 1 LIKE); kinase mutant has Altered vascular cell differentiation; LRR Receptor Kinase Identical to Serine/threonine-protein kinase BRI1-like 1 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) (BRL1) [Arabidopsis Thaliana] (GB:Q9ZWC8); similar to BRL3 (BRI1-LIKE 3), protein binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G13380.1); similar to BRI1 (BRASSINOSTEROID INSENSITIVE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G39400.1); similar to BRL2 (BRI1-LIKE 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G01950.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36390.1); similar to putative leucine rich repeat-type serine/threonine receptor-like kinase [Daucus carota] (GB:BAD16810.1); similar to hypothetical protein [Solanum lycopersicum] (GB:CAC36401.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.655622275887065 7.17507445340299 1.91894853313182e-05 0.283160045548931 8.01117818705605 4.19107072087458 0.655622275887065 0.0696495221099566
AT1G73130_at 4.47305914409963 4.45824521164164 5.6238288664538 5.32394758752046 5.07986647090998 5.01908581168335 4.12536868093855 3.68837908926266 3.22658713980277 3.64201781805269 3.97899194423954 4.08305264872479 3.8999262626381 4.07792319497185 3.28356819693863 4.19872755575754 4.611679594035 3.3875759073278 3.93813382629852 0.233081591771231 0.228684847658093 0.234345738141772 0.242923552370983 0.245247036965947 0.234006229032953 0.232074366430899 0.229653883966624 0.231610220600191 0.236402555676475 0.229679597219978 0.229867150218677 0.232811019161026 0.236380817577733 0.229850678118765 0.232803860755673 0.230040236322184 0.239339263766272 0.232841883786364 1 1 + 27504576 27505492 27504931.455 27502696 27505716 + gene protein_coding_gene FALSE TRUE AT1G73130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17780.2); similar to hypothetical protein SH0040 [Staphylococcus haemolyticus JCSC1435] (GB:YP_251955.1) 0.706676777175387 7.17465345114236 1.91997641170054e-05 0.283292519546414 8.01078060575355 8.49518607004566 0.706676777175387 0.092353880886952
AT3G62220_at 5.67658391664899 6.23866226442348 4.98347540676303 4.72054360817933 4.77982535490718 5.3609347591491 5.99166842469751 6.08263637157382 5.77605577816697 5.60128668318299 5.05378601443108 5.18888077781137 5.29779697148352 5.23110295917372 5.00591969447682 5.01875905256551 4.90295363970489 4.79176042580308 5.90163788270786 0.209802878912318 0.212866697866641 0.216481192973822 0.212883755332246 0.208092412675947 0.210659939218965 0.212340107025079 0.207857685501782 0.213449856499636 0.213702538631206 0.207618769254002 0.213352014609278 0.20960437386348 0.207618769254002 0.207618769254002 0.210091408966149 0.214742773067150 0.212227194467345 0.207618769254002 3 3 - 23040272 23041071 23040678.818 23040075 23042130 - gene protein_coding_gene FALSE TRUE AT3G62220.1 serine/threonine protein kinase, putative similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G47060.2); similar to Protein kinase [Medicago truncatula] (GB:ABE82412.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.867241567420493 -7.17388447280852 1.92185540289112e-05 0.283550546142555 8.0100543368367 10.8898062916014 -0.867241567420493 0.147962092451491
AT3G46000_at 10.6937259809578 10.8676213627523 11.3613326385539 11.2933133957234 11.4547770941155 11.1833105901557 10.7554271621706 10.7322982043419 10.6872989586779 10.5524385659307 11.5145571749064 11.0320995686750 11.2961890210932 11.2628402429060 11.0720063433242 11.1250339743677 11.2147085462526 11.1687107438116 10.2838861520849 0.0854835231603656 0.0860809188388168 0.0891413564631636 0.0866695847336031 0.0863972537426969 0.0910751788115484 0.085711420932886 0.0858299059934637 0.101292785611560 0.0867091797327764 0.0854835231603656 0.0854835231603656 0.0880031267929012 0.0933180779571323 0.0886953435437135 0.0858782528680824 0.0854835231603656 0.09035501832611 0.0875852900673726 3 3 - 16918728 16919195 16918971.909 16918466 16919984 - gene protein_coding_gene FALSE TRUE AT3G46000.1 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding Encodes depolymerizing factor 2. Identical to Actin-depolymerizing factor 2 (ADF-2) (AtADF2) (ADF2) [Arabidopsis Thaliana] (GB:Q39251;GB:Q9LZT2); similar to ADF4 (ACTIN DEPOLYMERIZING FACTOR 4), actin binding [Arabidopsis thaliana] (TAIR:AT5G59890.1); similar to Actin-depolymerizing factor 2 (ADF 2) (GB:Q9FVI1); similar to actin-depolymerizing factor [Platanus x acerifolia] (GB:CAL25339.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.631904447550355 7.17002887806687 1.93130635377785e-05 0.284925626372846 8.0064115203474 21.9020471840038 0.631904447550355 0.0571592069280542
AT1G32350_at 2.26813208031736 2.88620274950401 5.28682014984798 5.99095015756994 3.45020455110458 2.85082309726435 1.99388979831407 2.19998028656457 1.46775271672415 2.34992671612321 2.11418651593307 1.96152139631454 2.13983421631762 2.12910532461148 2.13679921336682 2.13131410533496 2.25758579940981 2.02907893025407 2.51157302524467 0.265196056656518 0.263207123277046 0.304490460915705 0.316605648725061 0.266806994130659 0.270041795289461 0.268409440853788 0.272402497270339 0.279409770107871 0.266706718852572 0.265785866156250 0.262286535348547 0.273258914947111 0.267395923530009 0.266782227113758 0.265176526283212 0.271075767062867 0.265420362647898 0.267558629842697 1 1 - 11667219 11667995 11667705.455 11666957 11668670 - gene protein_coding_gene FALSE TRUE AT1G32350.1 AOX1D (ALTERNATIVE OXIDASE 1D); alternative oxidase Identical to Alternative oxidase 3, mitochondrial precursor (EC 1.-.-.-) (AOX3) [Arabidopsis Thaliana] (GB:Q8LEE7;GB:Q8VY45;GB:Q9C612;GB:Q9LQM4); similar to AOX1A (alternative oxidase 1A), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G22370.1); similar to alternative oxidase [Populus tremula x Populus tremuloides] (GB:CAB72441.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) 1.03016281430025 7.1683161565195 1.93552063968962e-05 0.285528004767013 8.00479258916537 5.47696486233926 1.03016281430025 0.195753958552996
AT2G45660_at 9.0335031432498 9.43916511035797 9.79314826136343 9.90537883432716 10.3084324457620 9.8963089053713 9.69483714773853 9.5469993191025 8.90376167626665 8.72901936597743 9.60753525389697 9.49702356296592 9.6309865951153 9.81048438829154 8.81612607140197 10.2001200324462 9.91752117886106 8.91224469147118 8.22286317112454 0.178097249960185 0.182332599521246 0.185770240425306 0.177648788438137 0.177222452808294 0.185539566046025 0.176956379786981 0.181763630679420 0.188394152236100 0.199940273705966 0.179277378662036 0.175764367971727 0.181411854539542 0.186433399072226 0.198145931589553 0.175764367971727 0.184830003149443 0.193230023085887 0.202752007572419 2 2|0 -|/ 18814882 18817152 18816102.125 18814612 18818121 - gene protein_coding_gene FALSE TRUE AT2G45660.1 AGL20 (AGAMOUS-LIKE 20); transcription factor Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of Identical to SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 protein (Agamous-like MADS-box protein AGL20) (SOC1) [Arabidopsis Thaliana] (GB:O64645); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.3); similar to MADS-box protein [Cardamine flexuosa] (GB:AAP20424.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.738824041138585 7.16700152996195 1.93876208541092e-05 0.285986795218964 8.00354964840905 18.7859982923737 0.738824041138585 0.105102633937086
AT2G37750_at 3.62613425129295 3.64923302658215 6.03597427172764 6.00723529075586 2.77974238551285 3.05221941488934 1.85462778553542 2.01068486971504 2.10825951656130 2.47881811668854 1.41852332689745 1.94404554846542 1.95630008529102 1.55816882133282 1.74341370364144 1.90383639278878 2.24048035126179 1.85594522741278 2.18186919669834 0.214143694924281 0.214984167719284 0.224560145305581 0.222099398130215 0.217416709684912 0.213447205832711 0.219643948447488 0.221192306822435 0.224564024143483 0.218861685200510 0.213679195732436 0.212741915946984 0.217173736256233 0.224727878039206 0.211879782514363 0.215016584018607 0.211879782514363 0.213273889490502 0.217613388286412 2 2 + 15838107 15838319 15838228.364 15838067 15838636 + gene protein_coding_gene FALSE TRUE AT2G37750.1 unknown protein 0.627448214796876 7.16602547658427 1.94117249216736e-05 0.286322942594685 8.0026266475539 5.66893380806099 0.627448214796876 0.0547129301906461
AT2G30930_at 9.53939023512136 9.5528727969623 9.7892324272461 9.88860142808715 10.1840188865227 10.1644637434195 9.09001308884782 9.24290822071732 9.43855211385902 9.05116111898985 10.6080443161218 9.56573872147752 10.5696476386422 10.3891817742031 9.27090757034586 9.2197205666901 9.26532187094829 9.53579824719506 9.28925810989874 0.0965356971897525 0.0949376098856022 0.098260146831288 0.0979451491122204 0.0959309112212379 0.100714333451098 0.0979001937975895 0.096938232737607 0.114155926704752 0.104825712588195 0.0899624618436482 0.0896874617437225 0.0928087653045458 0.0908557674003087 0.092206519550765 0.100103211086117 0.0938613718229669 0.0959783285795254 0.0949595274187425 2 2|0 +|/ 13169549 13169997 13169747.778 13169446 13170475 + gene protein_coding_gene FALSE TRUE AT2G30930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06540.1) 0.596835504930215 7.16515953347608 1.94331367293485e-05 0.286619333621161 8.00180764994908 19.2127887045916 0.596835504930215 0.0318229142208484
AT1G09970_at 10.1008083912300 10.099234654413 10.6301479306431 10.8329004324008 10.1741186086164 9.63008906132794 8.52502655417135 8.6814190369094 8.44286824929663 8.1679847230005 8.68724229925064 8.67365284220987 8.49808756207876 8.63164937584643 8.37453852537829 9.46125982004197 8.20694624836456 8.72110524350728 7.84079480786993 0.128426768840856 0.126977776746863 0.128580201753362 0.133115704219895 0.131261570661931 0.131793029614089 0.130760543397039 0.126977776746863 0.145984804890183 0.144420631225976 0.134292136488556 0.126977776746863 0.130758160306708 0.144114677419018 0.130050193422255 0.127114836637974 0.138950652163792 0.131898726091638 0.145070568795909 1 1 + 3254694 3255355 3254961.455 3252242 3255695 + gene protein_coding_gene FALSE TRUE AT1G09970.1|AT1G09970.2 leucine-rich repeat transmembrane protein kinase, putative similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G49660.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28309.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99940.1); similar to clavata-like receptor [Picea glauca] (GB:ABF73316.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.73572641429757 7.16417353880799 1.94575479086845e-05 0.286959916557279 8.0008749693928 18.2378978335342 0.73572641429757 0.104054333036113
AT4G32940_at 12.9267229613186 13.0650356674438 13.5187863475426 13.4760207583228 13.5489654250052 13.5905865192816 12.1019095902226 12.1570572503482 11.3323728398821 11.8032808333553 11.6177442988468 10.9338401869992 12.1596947699105 11.7509600192087 10.7155606204223 12.0109132656323 12.4406765505938 11.9135076501084 11.2987052313302 0.0799828103241538 0.077431053991563 0.0797289567196026 0.0804687216090031 0.0792020677161295 0.0891844022523958 0.0795594869532842 0.0783972994298963 0.0840578059918948 0.0797541399354595 0.0786517002237869 0.0784595438297998 0.0778542906553693 0.0820637531676185 0.077431053991563 0.0780632415165189 0.0818132574339156 0.0799801931313747 0.0802713238348147 4 4 - 15900566 15901532 15901066.818 15900273 15903271 - gene protein_coding_gene FALSE TRUE AT4G32940.1 GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. Identical to Vacuolar-processing enzyme gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) [Arabidopsis Thaliana] (GB:Q39119;GB:Q9SB73); similar to ALPHA-VPE (ALPHA-VACUOLAR PROCESSING ENZYME), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT2G25940.1); similar to unnamed protein product [Homo sapiens] (GB:BAC86022.1); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49043); similar to aspara (GB:BAA76744.1); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) 0.592825465282071 7.16309739193622 1.94842286854060e-05 0.287333920423682 7.99985684140711 24.6336264674712 0.592825465282071 0.0277605142588439
AT2G45760_at 3.96908853576176 3.89812532048826 7.31537218082388 7.04075966868961 3.82081710710398 3.40688246810279 4.07359737751790 4.17016271576639 3.85194712993968 3.88388135887059 3.33261482519682 3.24492253487101 4.0054320556748 3.75954891789352 3.43229601686128 4.08162746139751 4.0149642194643 3.87116633838809 3.35999585969353 0.254430510261069 0.254848515438885 0.264655785725411 0.296996537735096 0.244405168259277 0.24228807599974 0.241719342495665 0.254046458303020 0.244693102581736 0.246932970346921 0.264539650487463 0.241719342495665 0.241719342495665 0.241719342495665 0.241719342495665 0.261032017207565 0.252468087170211 0.241719342495665 0.258772111211177 2 2 - 18854253 18854529 18854350.667 18854081 18854895 - gene protein_coding_gene FALSE TRUE AT2G45760.1 BAP2 (BON ASSOCIATION PROTEIN 2) encodes a protein that is similar to BONZAI1-binding protein BAP1. similar to BAP1 (BON ASSOCIATION PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G61190.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46356.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.693713899423485 7.13965849011344 2.00752083337762e-05 0.296029022089864 7.97763757401563 8.420065502975 0.693713899423485 0.0884298426613613
AT1G33260_at 5.21426210812389 5.6579395691997 4.53320007053383 5.37449996979429 4.3878718996083 4.18840547034941 7.11462792485694 7.73538713835792 5.19384427505911 5.87356946656987 5.56160716477402 5.38953647817173 4.84117793421665 5.30989653544142 4.72748222625641 4.89856147430633 4.89248925998932 4.95811751259143 4.95160968623105 0.235530322969669 0.22304783149435 0.23197388679221 0.22304783149435 0.225122922206208 0.251521912079094 0.233955238630817 0.230529472945915 0.236156203279858 0.22304783149435 0.227670816865841 0.223241822605040 0.22304783149435 0.225609139455101 0.22304783149435 0.22304783149435 0.232170481174592 0.22304783149435 0.227075891904084 1 1 + 12065519 12066059 12065715.818 12064489 12066356 + gene protein_coding_gene FALSE TRUE AT1G33260.1|AT1G33260.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10390.1); similar to Os02g0648100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047579.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053443.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10390.1); similar to Os02g0648100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047579.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053443.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -1.03843786764904 -7.13107353370821 2.02964613916260e-05 0.299271323219526 7.9694782289469 10.7317907934389 -1.03843786764904 0.199558671773784
AT1G31750_at 3.60636284925603 3.43946525858891 5.15394412807847 5.35996987762624 4.33219670355295 4.783289633741 4.06244560611178 4.40034811836181 3.73357923004207 3.31833991195888 3.80954328715330 3.29568703032216 4.13505036042476 3.98471933005435 3.49890415882084 4.12503918203666 5.01274760383614 4.02330956511837 3.54299660120137 0.269183259105432 0.272914706150893 0.267960537138094 0.279383087982946 0.285930280316302 0.286618788534646 0.273697109653919 0.270750781547448 0.284562052983616 0.274760670554806 0.266147927870839 0.276497051590394 0.265947447559841 0.268390900391287 0.275478153514342 0.270035968237293 0.281980248092463 0.268346502197992 0.267800874110712 1 1|0 -|/ 11370803 11371981 11371221.9 11370640 11372058 - gene protein_coding_gene FALSE TRUE AT1G31750.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT4G19200.1); similar to Unknown (protein for MGC:12025) [Mus musculus] (GB:AAH05782.1); similar to Os05g0119300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054483.1); contains InterPro domain XYPPX repeat; (InterPro:IPR006031) 0.742090555661708 7.12848946458285 2.03635704327975e-05 0.300240482461166 7.96702004965805 8.15088459480878 0.742090555661708 0.107790185843260
AT4G38580_at 8.47796784901585 8.63421197783668 7.37262277770318 7.37629691219473 8.43305481943293 8.46929028066945 6.45629417403514 7.15451357058451 5.96382792051514 6.31492447830797 7.39055242975029 7.44415756028595 7.78101277505132 7.8356909385921 7.651689006798 7.50992770945471 6.8458931204318 7.52753309340597 6.18581239214518 0.194934362404326 0.201031838578252 0.203971469682743 0.204209538663612 0.194086262544014 0.203441068512634 0.188863860591282 0.208369901149595 0.206450781091203 0.200643945316555 0.189012356373640 0.192900654476774 0.203215463004522 0.199892103014702 0.191963466030073 0.194170813042849 0.212387581438171 0.192696958183290 0.204249822186998 4 4 + 18034619 18035637 18035385.182 18034425 18035883 + gene protein_coding_gene FALSE TRUE AT4G38580.1 ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding putative farnesylated protein (At4g38580) mRNA, complete similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G35060.1); similar to GMFP7 [Glycine max] (GB:AAD09515.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.787760726765267 7.12722751210012 2.03964303265391e-05 0.300704572304166 7.96581920318445 14.6233625499561 0.787760726765267 0.123978788995424
AT1G29400_at 7.6787593622736 7.82727356961675 7.95973179086911 7.99951728698075 8.6530228798957 7.93709329751017 7.58778129746608 7.40470268554503 7.0900102207397 7.16292024674333 8.27950202639307 8.14528201270622 8.38948977057051 8.4446947726621 7.91731677345225 9.026657611833 8.46306476145254 7.73424988020543 7.34394452963636 0.158307451490952 0.159090235856376 0.167186124164905 0.164174905396536 0.153820871793930 0.160046745604006 0.158271220395406 0.164251452850081 0.173523876786249 0.169725593232004 0.157224908908743 0.156729298642396 0.159008506770516 0.167859601384198 0.174324455215745 0.164852086114153 0.165994111271012 0.162968846206711 0.169645332443982 1 1 - 10290610 10291361 10290993.636 10290026 10294616 - gene protein_coding_gene FALSE TRUE AT1G29400.1|AT1G29400.2 AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices. similar to AML3 (ARABIDOPSIS MEI2-LIKE), RNA binding [Arabidopsis thaliana] (TAIR:AT4G18120.1); similar to AML1 [Medicago truncatula] (GB:AAT38998.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.806892976937416 7.12139520466932 2.05490392532239e-05 0.302933936671027 7.96026612208504 15.6304805380359 0.806892976937416 0.130620429111161
AT1G07135_at 8.12927164981188 7.45642147505969 8.16557807217078 7.93379625043337 8.02157437503185 7.87736177835723 5.23195226695869 5.92586439738807 7.99533387273076 6.42787183231653 7.81865173922537 7.93036387586562 7.46184229564462 8.41809577583404 8.03126123951374 6.72726914747888 6.89856990294256 8.4788359438045 7.00280696496798 0.270598630235717 0.270598630235717 0.270598630235717 0.292495832601895 0.270598630235717 0.307399022498753 0.298326104752765 0.311422008521301 0.270598630235717 0.280875074101684 0.270598630235717 0.270598630235717 0.270598630235717 0.292088897196925 0.290160206932425 0.290128817646173 0.282800389633905 0.270598630235717 0.270598630235717 1 1 - 2190184 2190371 2190295.75 2189927 2190658 - gene protein_coding_gene FALSE TRUE AT1G07135.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT3G04640.2); similar to RH06401p [Drosophila melanogaster] (GB:AAM29562.1) 0.946153594196982 7.11742327045957 2.06536714226200e-05 0.304455770440842 7.95648134868277 14.77403526484 0.946153594196982 0.173811118716863
AT4G28350_at 3.80956249840771 4.20259150651333 4.10776713294542 3.77471795345925 3.84246489773925 4.03154217802052 4.51618887729831 4.81889468500239 4.08782082869923 4.42886432921042 2.53439881640377 3.00841095429413 3.27657841308871 3.18226274711266 2.16517285725905 3.92694149577508 4.00211534835972 3.40742381985123 4.31042450739506 0.230810825324831 0.224547038141122 0.238566203351766 0.235430897891564 0.224577897526484 0.223838299217088 0.227379384204843 0.229084305311381 0.224076809295737 0.228300186482199 0.239064220672666 0.224256667737247 0.224457091198643 0.225999215087799 0.235929006701232 0.226411280596934 0.230085789322668 0.222734765085052 0.225026981427546 4 4 + 14028046 14028587 14028320.636 14026583 14028628 + gene protein_coding_gene FALSE TRUE AT4G28350.1 lectin protein kinase family protein similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G04960.1); similar to putative receptor kinase Lecrk [Oryza sativa (japonica cultivar-group)] (GB:BAC84737.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC57690.1); similar to Os07g0130300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058822.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.742738258257258 -7.1173429488673 2.06557932202871e-05 0.304466392067032 7.9564047868349 7.86977435531641 -0.742738258257258 0.108456352620419
AT3G07390_at 8.31395825728508 8.8079585547461 8.56214398352911 8.86792313313542 6.85826671011779 7.66270950221763 7.82842556975067 8.86440637946955 5.50084424168977 5.9998631050205 9.08948779701502 9.3057774375879 8.97456023449008 9.07399536804204 9.22327463122747 8.54093010233689 7.90340083756954 7.24333334594047 5.81229628130556 0.207051219251149 0.208557725426775 0.204585444731646 0.204922321300366 0.217521428393624 0.224630016075488 0.206124733438950 0.206856500721335 0.24451351275742 0.233823912146648 0.205335698652415 0.212540210964257 0.204585444731646 0.214368704691976 0.205395102857227 0.204585444731646 0.221511722680551 0.222520030667568 0.222364340935699 3 3 + 2365838 2366163 2365966.7 2365307 2366502 + gene protein_coding_gene FALSE TRUE AT3G07390.1 AIR12 (Auxin-Induced in Root cultures 12); extracellular matrix structural constituent isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. Identical to Auxin-induced in root cultures protein 12 precursor (AIR12) [Arabidopsis Thaliana] (GB:Q94BT2;GB:O82442;GB:Q9SRS7); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G25290.2); similar to Os08g0524400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062287.1); similar to putative auxin-induced protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75413.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018) 1.21620870093735 7.11464252197998 2.07272649269201e-05 0.305499157757875 7.95383018456697 15.4408971005888 1.21620870093735 0.248254839559585
AT4G01130_at 5.45081385828315 5.93444650217843 3.31526385147927 3.07735377391395 5.61065329584804 5.19651002288344 2.49258937305870 2.37291749024474 3.44139402651607 2.91333078370329 4.84054881017018 5.28900485095857 3.98502499196713 4.4187103268199 5.26760592037259 3.24071500759042 3.20481631375063 3.90838933587425 2.52642159491129 0.271562978478635 0.279001726354577 0.270854433737284 0.268562901483076 0.279525236900294 0.294270215421696 0.266841912257396 0.266270461548327 0.279734839071122 0.264276417210537 0.264074611916690 0.272531082129245 0.274382102197599 0.280317610482539 0.270668397679307 0.269860663236671 0.268804986501451 0.269005819443718 0.270821090496896 4 4|0 +|/ 487139 487983 487692.1 485833 488007 + gene protein_coding_gene FALSE TRUE AT4G01130.1 acetylesterase, putative similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to lanatoside 15-O-acetylesterase [Di (GB:AAY41077.1); similar to lanatoside 15'-O-acetylesterase [Di (GB:CAA09694.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.773111619867165 7.11400859287273 2.07440814929498e-05 0.305726273043094 7.95322563005192 7.79618556085197 0.773111619867165 0.119437528532756
AT3G21300_at 1.20350088055328 1.24685070481354 0.545369828194487 0.615404460469891 0.900995496806931 0.835540459652556 1.88289922304082 1.41642107988522 1.33345601795414 1.36143996531485 0.321867368534898 1.01733342042421 0.490411402884971 0.468008319093138 0.807977627070574 0.896868770784177 1.48234898610166 0.691819588421448 1.54907545835396 0.202643855945513 0.20588773249353 0.200142813593429 0.205359295177565 0.200170972238377 0.200142813593429 0.210527335519057 0.205198568391078 0.205982717512898 0.215305048713317 0.20553217283513 0.200142813593429 0.200142813593429 0.200142813593429 0.201923014850396 0.200142813593429 0.201342174978797 0.203916552425218 0.203645396992997 3 3|0 -|/ 7493702 7494552 7494127 7493445 7496295 - gene protein_coding_gene FALSE TRUE AT3G21300.1 RNA methyltransferase family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G28450.1); similar to tRNA (uracil-5-)-methyltransferase/TrmA [Chlorobium phaeobacteroides BS1] (GB:ZP_00530948.1); similar to Os01g0193600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042282.1); contains InterPro domain 23S rRNA methyltransferase/RumA; (InterPro:IPR001566); contains InterPro domain Methyltransferase small; (InterPro:IPR007848); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain (Uracil-5)-methyltransferase; (InterPro:IPR010280); contains InterPro domain Deoxyribonuclease/rho motif-related TRAM; (InterPro:IPR002792) -0.677834061292759 -7.11206113993962 2.07958343392583e-05 0.306468210657649 7.95136802935435 2.17424105798811 -0.677834061292759 0.0827538421893994
AT4G36220_at 8.68813030643052 8.39493865466401 8.53110187912378 8.44652290437413 8.84738586779369 8.62066039619627 6.97261617898888 7.44079717135525 6.82548487712225 7.76098147966843 8.23701291909751 8.83404175392765 7.93697245743306 8.11949157841609 8.42629083497805 7.17401256408437 8.03667589791044 7.70003141897679 7.413142137606 0.157870875617742 0.160471558971243 0.157891652186637 0.167284730330320 0.162965097561043 0.160521137228001 0.168218387477275 0.166336362867728 0.184006290222668 0.165546270397241 0.162425819549018 0.159629222564144 0.163986583439168 0.170640974734944 0.177927583763016 0.16496705033887 0.172447289360113 0.165899554702714 0.171375643752798 4 4 - 17137620 17138156 17137872.091 17137347 17139638 - gene protein_coding_gene FALSE TRUE AT4G36220.1 FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. Identical to Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) (CYP84A1) [Arabidopsis Thaliana] (GB:Q42600); similar to cytochrome P450, putative / ferulate-5-hydroxylase, putative [Arabidopsis thaliana] (TAIR:AT5G04330.1); similar to cytochrome p450-dependent monooxygenase [Brassica napus] (GB:AAG14962.1); similar to cytochrome P450 [Isatis tinctoria] (GB:ABL07485.1); similar to cytochrome p450-dependent monooxygenase [Brassica napus] (GB:AAG14961.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.73108026532487 7.11086351401852 2.08277296821124e-05 0.306917424595608 7.9502253694612 15.9384036746501 0.73108026532487 0.104366860090210
AT3G46880_at 5.94984558800849 6.13121634653306 5.00071894136021 5.16923255664278 6.03206101089747 6.18809558468761 6.41182077676405 7.00598662850906 4.7036455600884 5.39072355661041 4.65855358555474 3.31238349949433 4.96986714889743 4.51719025612674 3.7257929600658 6.21327731965752 5.81491061887438 4.17289976494712 6.14301774413094 0.218971754775950 0.213630713942935 0.209692047123216 0.214975685872863 0.226743122273301 0.236279091254339 0.209263129184153 0.211489527744663 0.219089915852967 0.209693759085331 0.206562205244140 0.217955808183469 0.206562205244140 0.213500965557601 0.209509035295956 0.217250971877960 0.215505437068993 0.23785584524413 0.212958375517291 3 3|0 +|/ 17276290 17277187 17276809.875 17276278 17277251 + gene protein_coding_gene FALSE TRUE AT3G46880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59080.1) -0.758271602148818 -7.103269623623 2.10311984319581e-05 0.309894708894902 7.94297485648014 11.0289080197481 -0.758271602148818 0.114618120920931
AT2G47000_at 3.6586675820077 3.98564711915172 4.16115341114583 4.23571637790709 3.48882094023318 3.78263224973916 2.29997982863452 2.08111081786130 2.17413775728702 1.87455436594434 2.27198611580961 2.75955587534337 2.21694359212603 2.45423378361095 2.39593345657790 2.73009735115563 3.19773867055249 2.59726296414595 2.31291605915768 0.275395217547589 0.254049396465948 0.261516501459276 0.254368151672967 0.249525212248452 0.247691168488918 0.244072645534047 0.243357485715756 0.247642904059650 0.251584307277923 0.24149077599675 0.244679255855939 0.252871787107898 0.244339340133986 0.247305922599966 0.244804311731453 0.251091598087275 0.251568350604110 0.241943284111227 2 2|0 -|/ 19317093 19317742 19317406.3 19316937 19321819 - gene protein_coding_gene FALSE TRUE AT2G47000.1 PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4); ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above. Identical to Multidrug resistance protein 4 (P-glycoprotein 4) (MDR4) [Arabidopsis Thaliana] (GB:O80725); similar to PGP11 (P-GLYCOPROTEIN 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02520.1); similar to PGP21 (P-GLYCOPROTEIN 21), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G62150.1); similar to PGP12 (P-GLYCOPROTEIN 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02530.1); similar to CjMDR1 [Coptis japonica] (GB:BAB62040.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE92210.1); similar to putative CjMDR1 [Oryza sativa (japonica cultivar-group)] (GB:BAA96612.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.684081161605702 7.10043170048876 2.11077842992377e-05 0.311002093864969 7.94026297226258 5.81096855931585 0.684081161605702 0.0859550483102497
AT4G38950_at 2.33341041850162 2.07994438331189 1.54132878032466 1.82589812197738 1.36617134471980 1.84623016652469 2.32862017776226 2.43979107904767 4.1700292767464 3.39554099616038 3.1797980306558 4.26583678166438 1.96059713236845 2.80771778314862 3.59859155560613 2.55376612339681 2.08409966577498 2.5881363897951 3.55725211991641 0.233414704182032 0.232382249594102 0.254889546311879 0.255863407240229 0.237109920382818 0.253425923675895 0.232382249594102 0.232382249594102 0.248735047434909 0.250806569805779 0.237981165806916 0.234610842037520 0.246189456355945 0.238736317266605 0.238770829593273 0.232382249594102 0.247274455618828 0.233940625450809 0.259838957874488 4 4|0 -|/ 18154601 18155235 18154872.3 18154389 18159929 - gene protein_coding_gene FALSE TRUE AT4G38950.1 kinesin motor family protein similar to microtubule motor [Arabidopsis thaliana] (TAIR:AT2G21300.2); similar to kinesin heavy chain [Zea mays] (GB:AAK91812.1); similar to putative kinesin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD46370.1); similar to kinesin heavy chain [Zea mays] (GB:AAK91822.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.73916197137117 -7.1000841543458 2.11171839586741e-05 0.311119471263146 7.93993077597336 5.26388700755908 -0.73916197137117 0.107800719202013
AT2G42040_at 7.51763463025827 7.75544129397922 7.47495566404139 7.6247752285547 8.72275731410918 8.0153163654837 5.1646056524547 5.10180208415444 8.11986211148811 6.57642030229358 8.31346672503541 7.03950152760849 7.90417799819058 7.77563239666195 7.01819551858592 6.76195647027752 6.60436031614547 7.26679758103548 7.17965037607039 0.246549837584071 0.253252493323510 0.258804383265184 0.251460508520044 0.257000601116882 0.253051248086894 0.259635441176436 0.261138976597568 0.247721087775675 0.245024404812703 0.247804047421158 0.239994284948199 0.244213387043988 0.25803152332634 0.252261080534211 0.245950183620652 0.255863706768817 0.242119058719972 0.244338082409825 2 0|2 /|+ 17551526 17552101 17551850.444 17550112 17552308 + gene protein_coding_gene FALSE TRUE AT2G42040.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35859.1) 0.809056848955415 7.09890708268906 2.11490522113275e-05 0.311567837177277 7.93880555268925 14.4859053607844 0.809056848955415 0.132181922605453
AT2G28890_at 9.13206425743294 9.15320409504719 9.32286889468536 9.56717426569286 9.45106415840745 9.22757557406514 8.251129910938 8.04183289283517 8.36671951933654 7.96109680304965 8.66149752208982 8.80630577375402 8.28475933676737 9.17300996413581 8.04674000968318 8.75164868584354 8.64219706752202 8.98478665432913 8.05160150846582 0.128409719326159 0.126382728331393 0.129101739826912 0.126118464442541 0.131426969095396 0.128391679384386 0.142200123914334 0.132639401814796 0.135374415866004 0.135999571380476 0.130282312800316 0.126417452302615 0.126111536654716 0.131501263661375 0.134776196714357 0.125669877870421 0.140507344812291 0.131335836773611 0.132388873480936 2 2 - 12412907 12413717 12413318.364 12412673 12415312 - gene protein_coding_gene FALSE TRUE AT2G28890.1 PLL4 (POLTERGEIST LIKE 4); protein phosphatase type 2C Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves. similar to PLL5 (POL-like 5), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G07630.1); similar to Protein phosphatase 2C, putative [Medicago truncatula] (GB:ABE91024.1); similar to Os03g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049705.1); similar to Os03g0821300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051726.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.645004225315494 7.09686527799775 2.12044550180950e-05 0.312362826871557 7.9368531789185 17.4160346246628 0.645004225315494 0.0678860594847457
AT4G18340_at 3.12685829528341 3.95018196987375 3.17468722248001 3.349344665376 3.64567057778144 3.65783300247554 5.02721182076508 5.61833543295389 3.31153114104076 4.16193358781439 2.89754687127112 2.57157059099882 2.73915153662622 3.04969606984233 2.88035131113473 2.54731165019906 2.87030794069967 3.30433516803391 3.92299345952647 0.265848413454064 0.264807403047067 0.268904509788778 0.267666641881509 0.264994303022448 0.264807403047067 0.272567742529868 0.267770084443972 0.273555387612991 0.268637918304205 0.266260871137388 0.266892603982663 0.267646325456702 0.264807403047067 0.267646931982028 0.264807403047067 0.264807403047067 0.265179705272301 0.265824438576004 4 4 - 10130464 10130962 10130757.6 10130061 10132072 - gene protein_coding_gene FALSE TRUE AT4G18340.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G30080.1); similar to Os06g0531000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057782.1); similar to putative beta-1,3-glucanase precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD54223.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.957524258233628 -7.09508703792349 2.12528332415386e-05 0.313054233647863 7.9351523007424 7.27194201761261 -0.957524258233628 0.177997649409934
AT1G75730_at 3.82271327283115 4.19741024396246 4.40191666155992 4.64363991436976 4.30879891129571 4.4748362150629 2.95745388413847 2.66888227167213 2.85042288153909 2.6273698013284 3.57848589806789 3.03426283912727 2.68312315461941 2.67946655749959 2.91853330327765 2.46022954006084 2.8520901483886 3.30213620800703 2.22360595730359 0.208508995865839 0.212399141673693 0.212893987613746 0.214070752772408 0.214895154114673 0.220363796818366 0.208968446042866 0.213523486160044 0.216446686116382 0.208508995865839 0.216387867775629 0.210943983845482 0.209663109794030 0.216091342338287 0.215112546145300 0.208508995865839 0.215252256368269 0.221929095270166 0.212938087845190 1 1|0 -|/ 28439669 28440357 28440031.9 28439367 28443328 - gene protein_coding_gene FALSE TRUE AT1G75730.1 unknown protein 0.708545541747515 7.09422604044286 2.12762998551250e-05 0.313378620566136 7.93432858511595 6.68729333995559 0.708545541747515 0.096301447264999
AT3G58750_at 8.7379691340312 8.81538433838156 8.86153449753855 8.89695446561195 9.44548200640006 9.04678285501263 8.09769948139534 7.78822991080611 7.79782015584828 7.2515239359968 8.1935495358125 8.10944095891427 7.74853772268236 8.46439340340709 8.3954680024032 7.90544698613042 8.04438210960346 8.31783527607965 7.36404210187745 0.160929472743543 0.160929472743543 0.163693929906169 0.162302986167498 0.165741131255713 0.165815472987905 0.162904468868590 0.163122217932923 0.172330058677819 0.181185252060637 0.162949266721488 0.167695929192587 0.166488373805483 0.163524828243533 0.167466931043612 0.161259331088457 0.166287168654463 0.161421813017543 0.170534085205182 3 3|0 -|/ 21735546 21736463 21736017 21735291 21738667 - gene protein_coding_gene FALSE TRUE AT3G58750.1 CSY2 (CITRATE SYNTHASE 2); citrate (SI)-synthase Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. Identical to Citrate synthase 2, peroxisomal precursor (EC 2.3.3.1) (CSY2) [Arabidopsis Thaliana] (GB:Q9LXS6;GB:Q570I4); similar to CSY3 (CITRATE SYNTHASE 3), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G42790.1); similar to CSY1 (CITRATE SYNTHASE 1), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58740.1); similar to Os02g0232400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046373.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); contains InterPro domain Citrate synthase; (InterPro:IPR002020); contains InterPro domain Citrate synthase I; (InterPro:IPR010953) 0.689560379062764 7.09333179860028 2.13007020214555e-05 0.313716739371997 7.93347294330065 16.5205098264572 0.689560379062764 0.0885762874334248
AT2G15480_at 3.74825931304786 3.704875430498 4.60685665418038 4.01360280077657 4.63668745364746 4.50053374716133 2.63248976145845 2.40772731203571 2.8370269100537 2.93999050369617 2.89746741788955 2.74553996980067 3.23830874630981 2.94854979667506 2.90765514358712 2.65783861900216 3.22101611755314 2.70206113210075 2.40750436895172 0.244784691565744 0.241846793411285 0.245990302770795 0.251410618646684 0.251386191292714 0.242797532625559 0.240530779764708 0.230274357615515 0.23602651310495 0.242728984374388 0.232401580481643 0.235433813725719 0.238715835852430 0.229378468714072 0.238814222701858 0.229378468714072 0.232720010701399 0.245085364247477 0.231841395786123 2 2 + 6766790 6767423 6767071.091 6765763 6767715 + gene protein_coding_gene FALSE TRUE AT2G15480.1 UGT73B5 (UDP-glucosyl transferase 73B5); UDP-glycosyltransferase/ transferase, transferring glycosyl groups similar to UGT73B4, UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15490.1); similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar to UGT73B3 (UDP-glucosyl transferase 73B3), UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G34131.1); similar to UDP-glucose glucosyltransferase [Rhodiola sachalinensis] (GB:AAS55083.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.75135644998951 7.09277566232627 2.13158930900604e-05 0.31391915753732 7.9329407503387 6.60286833181671 0.75135644998951 0.112537207880511
AT4G00430_at 10.3641927689851 10.4562129187208 9.92333847968647 10.0225970533058 10.0939764568556 10.0642570601364 11.0775560804430 11.1695589691554 11.2136886084342 11.0274665862340 10.7682767340076 10.9236893962055 10.7208053230258 10.5425179382547 10.9820592336576 10.6684600986797 10.2419077746589 10.6436617981104 11.1230615994848 0.080730118338906 0.077866096164649 0.079531028977735 0.0834503805059023 0.0786418671297653 0.0824097000514479 0.0780981145806974 0.078891688948014 0.0797107295705112 0.0780835871517419 0.0810552922437707 0.0767795256661533 0.0814231540711577 0.0803877690177869 0.0784317481430973 0.0786039130719555 0.0837622746290716 0.0805495743323794 0.0772045517669122 4 4|0 -|/ 186158 186863 186577.5 185450 187627 - gene protein_coding_gene FALSE TRUE AT4G00430.1|AT4G00430.2 TMP-C (plasma membrane intrinsic protein 1;4); water channel|TMP-C (plasma membrane intrinsic protein 1;4) a member of the plasma membrane intrinsic protein subfamily PIP1. Identical to Probable aquaporin PIP1.4 (Plasma membrane intrinsic protein 1.4) (Transmembrane protein C) (TMP-C) (PIP1.4) [Arabidopsis Thaliana] (GB:Q39196;GB:O23059;GB:O23829); similar to PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1,3), water channel [Arabidopsis thaliana] (TAIR:AT1G01620.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425)|Identical to Probable aquaporin PIP1.4 (Plasma membrane intrinsic protein 1.4) (Transmembrane protein C) (TMP-C) (PIP1.4) [Arabidopsis Thaliana] (GB:Q39196;GB:O23059;GB:O23829); similar to PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1,3), water channel [Arabidopsis thaliana] (TAIR:AT1G01620.1); similar to aquaporin PIP1b2 [Brassica oleracea] (GB:AAG23180.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.587910616402992 -7.0926910262415 2.13182059763574e-05 0.313931901207839 7.9328597538948 21.3003751659741 -0.587910616402992 0.0287852629925752
AT1G51580_at 5.00229205131702 5.0729648488707 4.12916906372531 4.24602876309586 4.43964703490166 4.60557498505039 5.06821996844539 5.23776932991107 5.70309994987675 5.89948583205222 5.8892974248175 5.50841561537688 5.20061748290085 5.4307265126629 5.44175525217763 5.32867563385525 4.38259815024331 5.00070820118328 5.65307286796785 0.214206772026444 0.208510473385348 0.221879011582943 0.215438199388043 0.209362239723298 0.215621322758858 0.206419697452034 0.206765612904519 0.210050727927261 0.213501838507046 0.210809701074420 0.211665257229490 0.207861169822614 0.208871425955519 0.207360764975499 0.206419697452034 0.216493521518463 0.218230620319187 0.214216865365184 1 1|0 +|/ 19130881 19131740 19131285.889 19129251 19131829 + gene protein_coding_gene FALSE TRUE AT1G51580.1 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G15270.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE93137.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.609621760211401 -7.09101880178704 2.13639588966747e-05 0.314584294753534 7.93125921363982 10.2375760060569 -0.609621760211401 0.0473708193803962
AT2G32010_at 5.95442043290375 6.33832585532922 5.22614665049054 5.3299702045666 6.579749787324 5.82954173560552 6.84216824316027 6.6716847343002 6.73883036179415 6.57854760953357 5.18411079230037 6.22171522230242 6.33992533989089 5.80905975357067 5.29264231967318 6.36595250608206 5.53972548719542 4.78739169498348 6.80376580058021 0.242987393348114 0.236614414800128 0.244576905607367 0.241695779147911 0.240040875055840 0.249196265052228 0.246452231686027 0.251022583282675 0.246819598482841 0.24065205295226 0.23837063097787 0.237004874676161 0.241018795109562 0.2418603011433 0.248595116151757 0.240172564889287 0.254414206347812 0.251376140550662 0.238909590268486 2 2|0 +|/ 13634336 13635133 13634794.1 13631869 13636223 + gene protein_coding_gene FALSE TRUE AT2G32010.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G05470.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G63240.1); similar to putative phosphatase (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07328.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE87137.1); similar to putative inositol polyphosphate 5-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAO37964.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.862390128198096 -7.0832126225411 2.15789400323349e-05 0.317728313036099 7.92378194262962 12.2963076121946 -0.862390128198096 0.149873676766115
AT4G34180_at 10.4798967929337 10.6990193117188 11.0462526830755 11.0846565279444 10.8037846902195 10.8694572395467 9.54211188700792 9.74707576461432 9.535795395487 9.54581636827285 10.0122200194150 9.85997325583595 9.65307166480377 9.98731422205492 9.67687930527732 9.7750324739769 9.8150011824684 10.1049329229739 9.2957895683108 0.103342444879542 0.101493666423526 0.102496727946192 0.101493666423526 0.104521670358121 0.105817404754884 0.105021089752320 0.105030442284402 0.110403134035735 0.10724176990492 0.101493666423526 0.102619500517613 0.105157019426782 0.107297794178953 0.103802812393818 0.102512631163070 0.111959155255389 0.1024936964805 0.104391561816458 4 4|0 -|/ 16370105 16371181 16370726.2 16369361 16371434 - gene protein_coding_gene FALSE TRUE AT4G34180.1 cyclase family protein similar to cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G44542.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC92446.1); similar to Os08g0319900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061523.1); contains InterPro domain Putative cyclase; (InterPro:IPR007325) 0.61771559981087 7.07595747987194 2.1780830391331e-05 0.320679165851566 7.91682403109726 20.1938753162364 0.61771559981087 0.053566668852185
AT1G18380_at 3.25725829163204 3.6766977164909 4.1999205136258 4.3042558884039 3.95660477028612 3.86784521187937 2.46954149450412 1.83345610146689 1.93882030791399 2.15837529902800 2.60985032326525 2.34595025413398 2.29927916979818 2.34573538563168 2.39697614155338 2.13230841743546 2.32805276547248 2.33468205801915 1.89933919967746 0.266916078469283 0.263285990983861 0.257647052347984 0.256212192799488 0.260132760150612 0.25355687631218 0.251401370546245 0.260260159542111 0.251401370546245 0.256888948503836 0.259229528473791 0.252559213102318 0.261554796954442 0.252731992595866 0.26123398807536 0.254031840414735 0.260169688963885 0.252402053262835 0.254610289992575 1 1 + 6326049 6326588 6326317.364 6325635 6326692 + gene protein_coding_gene FALSE TRUE AT1G18380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67025.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95895.1) 0.811588786949596 7.07366843923449 2.18449483533146e-05 0.321601329657498 7.91462707596716 5.6196721235129 0.811588786949596 0.133969146420754
AT1G02640_at 3.64725659828241 3.67118146428277 3.26624808059523 3.0648765966398 3.8272847815861 4.24585997302335 3.67824410561008 3.66198321089399 5.6480422974176 5.30589246277539 4.57933709728974 4.69418639633033 3.84672674621211 4.68828068758215 4.25536693137575 4.99176838291725 5.45015113508098 3.8866164206237 6.5167211959845 0.223797733224209 0.212302687263173 0.216709855420573 0.218187612787107 0.219058705253249 0.216987584452866 0.221799884839612 0.212302687263173 0.217373259599778 0.220956944150723 0.213906387174108 0.212302687263173 0.214240224401195 0.218131166897034 0.222275636250713 0.212302687263173 0.222266383677880 0.214757342919987 0.22552118898985 1 1 + 566996 567527 567215.727 564205 567769 + gene protein_coding_gene FALSE TRUE AT1G02640.1 BXL2 (BETA-XYLOSIDASE 2); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. similar to XYL4 (beta-xylosidase 4), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G64570.1); similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to BXL3 (BETA-XYLOSIDASE 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G09730.1); similar to alpha-L-arabinofuranosidase / beta-D-xylosidase [Pyrus pyrifolia] (GB:BAD98523.1); similar to beta xylosidase [Fragaria x ananassa] (GB:AAS17751.2); similar to auxin-induced beta-glucosidase [Chenopodium rubrum] (GB:AAP83934.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.669048373761093 -7.07182863984798 2.18966296629594e-05 0.322340285268426 7.9128607007669 8.81916995639871 -0.669048373761093 0.0805387706760771
AT3G56130_at 4.55504056409919 5.15304074422837 3.29987681776474 3.21762875345019 5.18221752752234 4.62300849196217 6.72813127015662 6.62105013495583 5.44554186470258 5.41113693173286 6.50601959002214 6.65695664557206 6.2344244756937 5.66604550546056 6.4438205349295 4.99498389540808 3.81424187642806 5.35700376133595 6.26465878953242 0.249128794675333 0.251368731299265 0.26008270903881 0.256766429386829 0.249320993593178 0.257063584679821 0.258415184242354 0.249128794675333 0.261866473953557 0.263263943745048 0.260587649099698 0.249128794675333 0.249128794675333 0.262673260935789 0.254225388457106 0.249128794675333 0.273924369356086 0.261020720013848 0.256007322185129 3 0|3 /|+ 20839172 20839961 20839410.375 20837637 20840249 + gene protein_coding_gene FALSE TRUE AT3G56130.1|AT3G56130.2|AT3G56130.3 biotin/lipoyl attachment domain-containing protein|binding similar to biotin carboxyl carrier protein of acetyl-CoA carboxylase-related [Arabidopsis thaliana] (TAIR:AT3G15690.2); similar to Single hybrid motif [Medicago truncatula] (GB:ABE84884.1); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053)|similar to biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52670.1); similar to Single hybrid motif [Medicago truncatula] (GB:ABE84884.1); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.840779136867421 -7.06900904993735 2.19760890621468e-05 0.323488030994801 7.91015261856695 10.6306490701485 -0.840779136867421 0.143598886665375
AT2G44640_at 5.32928468515207 5.68490700588853 3.07104995112455 4.1407345510165 3.98411908424831 4.45564656734302 5.1753729166982 5.75350095023361 5.23573144449338 5.10249875032018 4.01631488147906 4.89236699219776 3.89083005444909 4.37897916202373 5.88371335216116 4.95604439440904 3.94636917871113 4.00332198820153 5.35917238643852 0.242595977990430 0.24035997693619 0.244761239764717 0.249787642896623 0.239560484679499 0.249047392923894 0.236193553645727 0.237650450797969 0.252070478234191 0.241821034726837 0.233452967933687 0.234928263550981 0.235082074662566 0.236988842588406 0.241032663851236 0.233894329678597 0.239719965863411 0.242391443829838 0.250339047561715 2 2 + 18425356 18426104 18425745.455 18424319 18426472 + gene protein_coding_gene FALSE TRUE AT2G44640.1 similar to PDE320 (PIGMENT DEFECTIVE 320) [Arabidopsis thaliana] (TAIR:AT3G06960.1); similar to Os01g0251000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042598.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81221.1) -1.15467693884498 -7.06880473344686 2.19818589674832e-05 0.323550982142385 7.90995633436132 9.56355697773214 -1.15467693884498 0.233928850585599
AT2G36620_at 9.39288884603122 9.5235738153229 8.7431553786953 8.59716109296709 8.3267964803041 8.39350117003577 9.49705718527468 9.63040203129402 9.08171842135031 9.32149191642302 9.0379688369056 9.5842051585907 8.68092410607412 8.7022862202082 9.80841039802997 8.42342190296671 8.38025413360401 8.56671733497429 8.91032450296968 0.119950152826592 0.118558791073628 0.114406448438730 0.118050906264426 0.123043583581540 0.124494397368197 0.121147320421558 0.122781160174837 0.125914337595098 0.120308854160012 0.119335681671449 0.119352619278407 0.114406448438730 0.133353393606811 0.120535698134650 0.118965466377468 0.122322880938342 0.120801598349044 0.118903840386205 2 2|0 -|/ 15357651 15358373 15357973.556 15357428 15358979 - gene protein_coding_gene FALSE TRUE AT2G36620.1 RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020). Identical to 60S ribosomal protein L24-1 (RPL24A) [Arabidopsis Thaliana] (GB:Q42347;GB:Q9LF73;GB:Q9SKP1); similar to STV1 (SHORT VALVE1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G53020.1); similar to 60S ribosomal protein L24 (GB:O65743); contains InterPro domain Ribosomal protein L24E; (InterPro:IPR000988) -0.601157520570973 -7.06828290731176 2.19966027439459e-05 0.323745999185396 7.9094549933589 18.0143345624907 -0.601157520570973 0.0426091566030359
AT1G56600_at 8.76954914980202 8.67453504670492 10.2341896860271 10.1946197421972 10.5731134854053 10.3179774539848 9.87846062479205 9.94596436020088 6.63483852979978 8.12814247044177 7.36160384425785 5.00847751794794 9.2704363120787 8.56009622410158 6.30013968948032 8.20165743581099 10.2962137604269 8.7054798853666 8.5049438513291 0.172941575973914 0.173833111138787 0.174324444852124 0.172657559382664 0.178431263772089 0.180215716324215 0.173497538822715 0.173269007866239 0.184471883255522 0.183618445224118 0.186427088196897 0.201142924253671 0.172636621175623 0.178332016888096 0.208766671120776 0.18106890256837 0.173330528925340 0.183247104187589 0.178151978862965 1 1|0 +|/ 21211936 21212928 21212308.8 21211202 21213261 + gene protein_coding_gene FALSE TRUE AT1G56600.1 ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G09350.1); similar to galactinol synthase-like protein [Thellun (GB:AAM19710.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.609942964844465 7.06683815148392 2.20374786018467e-05 0.324325572583378 7.90806673334102 17.6830452107430 0.609942964844465 0.0490220242873963
AT1G77990_at 6.14978820059921 6.54684199407835 5.70905089053694 5.88913827767214 6.08819833929217 5.49353468629069 7.13476108546011 6.4632388353712 5.65558639775577 5.96074386173744 4.6780000008098 4.33604386637202 4.96889781133798 4.72998114853451 3.33941310489190 5.04598222117561 5.35019114169598 4.62040161177895 5.55725382632168 0.26330622604575 0.268296160144590 0.260428479292595 0.268551509978060 0.263273117032269 0.269056426744841 0.276137782327031 0.267265316314413 0.262274665709940 0.262639465242967 0.271414183374246 0.261566991471111 0.264423656719572 0.267817237345689 0.284961269888245 0.260974278377943 0.273814022231215 0.283613753765578 0.269968508711002 1 1|0 -|/ 29322863 29325732 29324081.571 29322793 29328246 - gene protein_coding_gene FALSE TRUE AT1G77990.1 AST56 (sulphate transporter 2;2); sulfate transporter cDNA encoding a sulfate transporter. Identical to Sulfate transporter 2.2 (AST56) (AtH14) (SULTR2;2) [Arabidopsis Thaliana] (GB:P92946;GB:O64434;GB:Q8LPG2;GB:Q8VXW4;GB:Q9SH01); similar to AST68 (Sulfate transporter 2.1) [Arabidopsis thaliana] (TAIR:AT5G10180.1); similar to plasma membrane sulphate transporter [Brassica oleracea var. acephala] (GB:CAG17931.1); similar to putative low affinity sulfate transporter [Brassica napus] (GB:AAZ08077.2); similar to 4D11_19 [Brassica rapa subsp. pekinensis] (GB:AAZ67533.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -0.934795572854803 -7.0630974392837 2.21436925771198e-05 0.325866579964895 7.90447079288275 11.3633899846274 -0.934795572854803 0.172591136904591
AT1G64110_at 2.30739909653695 1.69419855207771 2.92770782027776 3.45198531444824 4.25262875588766 3.89891974539088 2.75617321038556 2.42500427464097 1.45240332929148 1.96576999924732 2.10964556364379 2.09374107246258 2.46802931454166 1.92411600298695 2.12273656478355 1.96696422292869 2.90874775393796 2.51307844779764 1.97427311273122 0.223455573322370 0.226311424363319 0.225195543182244 0.227242071010876 0.237579989245895 0.234416921935510 0.223599022833503 0.225479350190204 0.225223729534564 0.224273271154281 0.234041863664563 0.222639399257818 0.222639399257818 0.227968710607989 0.225941614055842 0.222639399257818 0.231920023348248 0.224727148506528 0.222639399257818 1 1|0 -|/ 23800550 23801455 23801107.444 23800382 23805388 - gene protein_coding_gene FALSE TRUE AT1G64110.1|AT1G64110.2 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G28000.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G52882.1); similar to AAA ATPase, central re (GB:ABE83074.1); similar to AAA ATPase, central re (GB:ABE87117.1); similar to AAA ATPase, central re (GB:ABE79750.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.901508423193092 7.05759056956057 2.23010567734852e-05 0.328160050421835 7.89917309429037 4.9946843536934 0.901508423193092 0.162861331907377
AT2G16710_at 9.29585958995233 9.42088478352153 9.5206729989749 9.63963443605034 10.1657671666290 9.28845850603941 8.26816979499768 8.11960392730042 7.76242482205334 7.86188702049199 8.8146165298996 8.52455031194246 8.5585400945764 8.6995795886219 8.3446324111889 8.67249249852203 8.44327401557306 8.8380207322624 7.5547483254469 0.171424693205440 0.167264553307227 0.168486041303506 0.16549595519925 0.173223694510434 0.172396950393023 0.168485256755164 0.168748222230747 0.221937203262643 0.18258554897654 0.172739431355858 0.164736281371636 0.167160021419635 0.182525349757362 0.169452956030156 0.168705695055444 0.179294293035431 0.175867098537837 0.178623466098354 2 2|0 +|/ 7255380 7257056 7256068.3 7255222 7257373 + gene protein_coding_gene FALSE TRUE AT2G16710.1|AT2G16710.2 hesB-like domain-containing protein Identical to Iron-sulfur assembly protein IscA-like 1, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q8LBM4;GB:Q9SLE6); similar to iron-sulfur cluster assembly complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G36260.1); similar to Os12g0485500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066782.1); similar to IscA -like [Oryza sativa (japonica cultivar-group)] (GB:BAD44876.1); contains InterPro domain HesB/YadR/YfhF; (InterPro:IPR000361) 0.881556818236508 7.0557586609969 2.23536712801205e-05 0.328911919215693 7.89740972402411 17.3840397315102 0.881556818236508 0.156853355027127
AT3G22060_at 7.64858299921983 8.39584476939848 6.07033619369392 6.18040944863691 6.96491090639117 6.11685937710999 6.0276206873277 6.27332737550282 6.93175297107426 5.7732227381316 4.94580172612357 6.8977162065965 5.22058111224063 5.70764052761721 5.39386872415247 6.38855418913877 3.86968929491106 4.6440777787021 7.38017456040526 0.271953360266912 0.278297481347447 0.262510046250484 0.265223142615289 0.260938253199651 0.274477963946821 0.262678435765634 0.266677884753580 0.267902132910724 0.260704256917278 0.278414534531115 0.262003327764782 0.271021700596560 0.262637838252865 0.262254239651719 0.260704256917278 0.283740596887601 0.269937350480974 0.260704256917278 3 3|0 +|/ 7771240 7772120 7771802.3 7771023 7772347 + gene protein_coding_gene FALSE TRUE AT3G22060.1 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G58310.1); similar to Os07g0537000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059871.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC83606.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -1.03238693566965 -7.05242786264162 2.24496775392594e-05 0.330302105635123 7.89420220641627 12.7490071120629 -1.03238693566965 0.201077265718277
AT2G21180_at 5.54065825482221 5.86407245247708 5.96664393761757 6.06182294879762 7.14199484005638 6.81974120414557 5.63740037092025 6.01408965683463 5.05838755691351 5.38132670251454 5.79674563016748 6.08513078375659 6.55078801938877 6.41392759209748 5.72371260002352 6.35927043897705 6.13556477267883 6.10669855713725 5.86089254407701 0.224816160530777 0.225784140383461 0.219297183054555 0.221532407158665 0.22754930998277 0.231932680813988 0.219669598011968 0.218858468047812 0.228244482331397 0.219787077047483 0.223272651690227 0.216810114066649 0.218623405769268 0.217789322260428 0.216810114066649 0.219175745800397 0.223855212835029 0.230037905733502 0.219301588907266 2 2 - 9082068 9082385 9082210.818 9081741 9082461 - gene protein_coding_gene FALSE TRUE AT2G21180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19875.1); similar to Os06g0206900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057097.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81380.1); similar to Os03g0249700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049562.1) 0.72321987350038 7.05026896109515 2.25121417907896e-05 0.331198630026097 7.8921222895495 11.9208106584323 0.72321987350038 0.103745947850529
AT3G20410_at 7.93162223546779 7.98990246927442 8.09617783261862 8.00360565346625 8.12392357994971 7.96615944674652 6.47568030741364 6.65668736069248 7.00945151208036 6.3018660385913 7.28689491547772 7.39907955041217 7.07127287582699 6.9130150470819 6.80744529243988 6.90312628736769 6.65542316330413 7.24472732702118 6.52580159100118 0.171485480044148 0.167608267098384 0.166497828721813 0.168872621615088 0.165489670445871 0.171441494595633 0.171905158973814 0.174528003494075 0.176825891996641 0.164989473268819 0.17520649259245 0.167305270874252 0.172651558608471 0.177411045589640 0.177062163654645 0.169363619601012 0.176561360564314 0.165870689892763 0.181552218424438 3 0|3 /|+ 7117906 7118625 7118294.375 7116207 7119127 + gene protein_coding_gene FALSE TRUE AT3G20410.1 CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 9 (CPK9) similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G50700.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to Ca2+-dependent protein kinase [Mesembryanthemum crystallinum] (GB:AAD17800.1); similar to calmodulin-like domain protein kinase isoenzyme gamma [Glycine max] (GB:AAB80693.1); similar to calcium dependent protein kinase 3 [Medicago truncatula] (GB:ABE72958.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.603371772562683 7.04624443879232 2.26290836284719e-05 0.332896449258450 7.8882430712598 14.4792179129990 0.603371772562683 0.0456612753701773
AT1G76550_at 6.01671137023816 6.12794475251534 6.37703893139799 6.5495202278641 5.75704016400459 6.00534837187296 5.86283427196276 6.03521410974191 5.57233970661574 5.62707345860750 6.91721507664436 7.35788555888119 6.52429199880013 6.64646727835477 7.16208720113372 6.51621107389539 6.29644357021957 7.05023951325088 5.9224836420407 0.196274389221775 0.192695812016478 0.183852871377234 0.183852871377234 0.188334582534324 0.196496232258908 0.184218651251190 0.191511077145764 0.203030637181795 0.201369750656553 0.185051618142787 0.188572016964215 0.188786292839510 0.18743267578875 0.188201598370430 0.186099721858325 0.192485810754416 0.196684439951761 0.193841052476183 1 1|0 -|/ 28727798 28728639 28728164.444 28727596 28731900 - gene protein_coding_gene FALSE TRUE AT1G76550.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related [Arabidopsis thaliana] (TAIR:AT1G20950.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41140); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:P21342); similar to pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus x paradisi] (GB:AAC67587.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.631558510406615 7.04531372274821 2.26562205324023e-05 0.333273004031638 7.88734559958715 12.3495335722758 0.631558510406615 0.0632287932088108
AT3G01860_at 8.40671266042155 8.65575156631622 8.15522586248379 8.13893791491626 7.44258896729715 7.63673790650913 7.55574321135839 8.14281015188831 7.98746454008443 8.64806632524105 7.02025710355113 7.65561129514921 7.82018764188138 8.10615483635647 6.89621704651785 8.1196756969131 7.55235039282563 6.87833067917992 9.36657268809691 0.201632342432841 0.203369527682531 0.1941573374233 0.208207048138246 0.193591645989782 0.198431117094563 0.194239721328442 0.206998820848008 0.206489489320521 0.193894627208678 0.198379909985478 0.193126454735412 0.189656387837100 0.189656387837100 0.208484820332338 0.189656387837100 0.212867002560336 0.201949372523463 0.194384218710501 3 3|0 +|/ 303789 304303 304054.6 302652 304569 + gene protein_coding_gene FALSE TRUE AT3G01860.1|AT3G01860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27210.1); similar to Os04g0380200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052596.1); similar to OSJNBb0089B03.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03997.1); similar to Os01g0920100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045217.1) -0.754075749644245 -7.04373138778942 2.27024369620273e-05 0.333930145274459 7.8858194747933 16.1035464989927 -0.754075749644245 0.115393477519729
AT3G24100_at 7.1207206763491 7.92966095911728 8.94540148062484 8.91616581713821 9.1460293884536 8.92449220565768 8.27167894020313 8.40671001709918 7.89890642775483 8.49120355601003 8.94894254770204 8.84867824508588 9.13341427509733 9.1546532805867 8.26007113024899 9.42489542730977 9.38844660579527 9.06663850932442 8.75490431163102 0.187057036244660 0.179034320812305 0.174941395720926 0.177126707798106 0.173605813045334 0.179245353270192 0.172880942065259 0.181395894410001 0.179388170130831 0.172063057323634 0.191228398395776 0.174910376674323 0.172063057323634 0.179040754075813 0.181486620620915 0.173652851927347 0.189901373304244 0.172063057323634 0.186509928298077 3 3|0 +|/ 8703781 8704005 8703838 8703293 8704235 + gene protein_coding_gene FALSE TRUE AT3G24100.1 similar to four F5 protein-related / 4F5 protein-related [Arabidopsis thaliana] (TAIR:AT4G13615.1); similar to Four F5 protein [Medicago truncatula] (GB:ABE85543.1); contains InterPro domain Four F5 protein; (InterPro:IPR007513) 0.848687822810794 7.0429311436448 2.27258488322468e-05 0.334251784624686 7.88504750975963 17.1625519028016 0.848687822810794 0.147101678201683
AT4G25830_at 4.47090423466718 4.72371879252335 3.0004126790533 3.61773619876177 3.64829516573338 3.51128070671555 6.84522496574398 6.5796487822401 6.07087675075977 6.01261636421934 7.26903033929724 7.55425603049918 6.6076094430429 7.15150719273724 6.35953332858005 6.45642886740648 5.42617700176210 7.20956404290982 6.25861403386678 0.253019494389280 0.238938898203750 0.255323740406129 0.254765811044091 0.253966468629531 0.268879539469612 0.250650940584537 0.244262317449955 0.250908307809649 0.249160913881565 0.239908636407702 0.238938898203750 0.238938898203750 0.238938898203750 0.239541730933549 0.238938898203750 0.23942223525981 0.256729795530270 0.241312993603399 4 4|0 +|/ 13133761 13134773 13134421.889 13133538 13135033 + gene protein_coding_gene FALSE TRUE AT4G25830.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT2G35760.1); similar to putative membrane protein [Gossypium hirsutum] (GB:CAE75666.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.78510772086512 -7.03677031332542 2.29069601999405e-05 0.336892663660525 7.87910105210255 10.9838021892105 -0.78510772086512 0.126496590848203
AT2G46225_at 6.93487027990813 6.40998680380564 5.36337586806365 5.17485838461248 6.4459859535154 6.41507576689767 7.4254123366316 7.1840621406435 6.62847489727009 7.37620650801156 6.9433792148455 7.20734137279624 6.98735704645809 6.38132113910375 7.26729904623452 6.83088777870136 6.03608053703887 6.72324370450346 7.32315166234533 0.218176248935443 0.214000316614932 0.224768422913734 0.212735617572446 0.222481685946442 0.222388037541218 0.215118882114673 0.218306627732146 0.226637959097557 0.223000333913960 0.217309049086682 0.214728809096307 0.219592525015529 0.232228912549306 0.224610241448046 0.212735617572446 0.221658416611861 0.228976883067986 0.217632697693736 2 0|2 /|+ 18990167 18991050 18990649.25 18988991 18991365 + gene protein_coding_gene FALSE TRUE AT2G46225.1 ABI1L1 (ABI-1-LIKE 1) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Identical to Protein ABIL1 (Abl interactor-like protein 1) (AtABIL1) (ABIL1) [Arabidopsis Thaliana] (GB:Q8S8M5;GB:Q8GWF6); similar to ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT3G49290.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90359.1); contains domain Subtilisin-like (SSF52743) -0.725461428111843 -7.03232376912292 2.30386392560301e-05 0.338806228899179 7.8748055555603 13.3723991513444 -0.725461428111843 0.105300152720945
AT3G18680_at 8.9237679373732 9.01681622046448 8.25005332505 7.99843230059657 8.83067848709612 8.48591340319038 8.73401566560441 8.4215200039271 8.1599585931476 8.60977596389833 6.7020574932937 7.39519587041609 7.7346245501169 7.15683292062435 8.27066530741365 7.89664769551033 8.16797225381124 6.85665863312152 8.8138144768147 0.155801307187444 0.150620484193774 0.146379774644308 0.15033774776324 0.146875531760137 0.152844091027283 0.153649017089936 0.157737248929587 0.152836584638629 0.147169313951360 0.164387169416267 0.154010543912190 0.155535748760243 0.158935405875495 0.145928257810865 0.147796809250585 0.152832438045855 0.158114190577219 0.146010100294542 3 3 + 6428693 6429433 6429096.545 6427409 6429698 + gene protein_coding_gene FALSE TRUE AT3G18680.1 aspartate/glutamate/uridylate kinase family protein similar to aspartate/glutamate/uridylate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G10030.1); similar to Os01g0965400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045493.1); similar to uridylate kinase [Synechococcus sp. JA-3-3Ab] (GB:YP_475807.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Uridylate kinase; (InterPro:IPR011817) -0.694014207637051 -7.03140761887303 2.30658708188406e-05 0.33918363039105 7.87392014367498 16.6078654271588 -0.694014207637051 0.0929494665951001
AT1G33970_at 10.0574153435789 9.97238212785764 10.3721521776141 10.4386082925575 10.7227151691938 10.4038932928457 9.52243478522415 9.4402598095054 8.82238068612298 9.25959450908628 9.64692606330545 9.20824228408834 9.72264475847762 9.70330645583933 9.16075217136377 9.52094648741178 9.8177592331146 9.41163460518239 8.95226583455043 0.105706050429743 0.103332819571231 0.103833005450684 0.102694602021754 0.105305466881417 0.106337642581500 0.108541481700346 0.109898923059352 0.112331718027871 0.108323952972118 0.103052200915518 0.108983251405772 0.108070295030384 0.106274581942115 0.102694602021754 0.104842683991381 0.103519342947994 0.11760800993935 0.107277394484452 1 1|0 -|/ 12349683 12350402 12350024.5 12349440 12351225 - gene protein_coding_gene FALSE TRUE AT1G33970.1|AT1G33970.2|AT1G33970.3|AT1G33970.4 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative|GTP binding similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT4G09950.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703)|similar to AIG1 (AVRRPT2-INDUCED GENE 1), GTP binding [Arabidopsis thaliana] (TAIR:AT1G33960.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703) 0.624416023636308 7.03070043776923 2.30869146438760e-05 0.339469992923552 7.87323660016519 19.3839527167644 0.624416023636308 0.059959677255978
AT3G20865_at 1.88509156077185 1.74402482052218 1.04542383314322 1.72730980906994 1.50741449811354 1.64345269243901 2.4994645406312 2.32654862026599 4.5362713347442 2.7535110104788 2.21920656398717 2.07823191119319 2.00083559334493 2.37529570830378 3.10053460331273 2.4507407917271 2.40271869884598 2.82561026527040 2.81059724189961 0.203641726977362 0.197509297081277 0.212071490416202 0.201207359384787 0.202418804607457 0.200235802867038 0.199320313286541 0.204198026644036 0.217681397120161 0.197552952451838 0.204882149281473 0.201887877755833 0.1971456203418 0.203572004751007 0.206642504180081 0.199264297377684 0.209484702876448 0.199297936206134 0.197147945479788 3 3 - 7308758 7308862 7308814.182 7308510 7308968 - gene protein_coding_gene FALSE TRUE AT3G20865.1 AGP40 (ARABINOGALACTAN-PROTEIN 40) Encodes a putative arabinogalactan-protein (AGP40). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41905.1) -0.784014303032875 -7.03018093778772 2.31023867162101e-05 0.339674391888437 7.872734414827 4.69656127822246 -0.784014303032875 0.126374300142461
AT4G28490_at 8.49290435306428 8.87588314868241 9.5593687558499 9.63427929047043 8.89665524229958 8.16595639149368 6.7349901214008 6.92948402844647 7.79586449939785 6.30291720512612 7.47627299577452 8.17737471137971 7.16018917855926 7.70006761679189 6.45680955814117 7.99213496725197 7.07901000823454 7.81165289666708 7.18267030534533 0.219927104799904 0.221782463007178 0.226403830258623 0.221536339228429 0.218811372687998 0.217656287095880 0.210150596439843 0.219062879926246 0.233525025025538 0.21591554262015 0.216630416245324 0.210150596439843 0.221677377232930 0.226116703727301 0.228324763575144 0.212673990222011 0.224998319633535 0.23010821715919 0.215057423885236 4 4 + 14080300 14080934 14080626.091 14077863 14081177 + gene protein_coding_gene FALSE TRUE AT4G28490.1 HAESA (RECEPTOR-LIKE PROTEIN KINASE 5); ATP binding / kinase/ protein serine/threonine kinase member of Receptor kinase-like protein family Identical to Receptor-like protein kinase 5 precursor (EC 2.7.11.1) (RLK5) [Arabidopsis Thaliana] (GB:P47735); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G25930.1); similar to HSL2 (HAESA-LIKE 2), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65710.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28308.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28307.1); similar to leucine-rich receptor-like protein kinase [Malus x domestica] (GB:AAC36318.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.84681058105341 7.02340848653167 2.33051101746230e-05 0.342631729787308 7.8661838333308 15.698943330575 0.84681058105341 0.147252439851194
AT1G77750_at 5.06074293562563 5.24587330427713 4.57118767230792 4.67039368504892 3.47019921861156 4.07765881864871 5.2710093433764 5.22488308387669 4.67006336801038 5.13527788256009 4.55976384861421 5.30121307817188 3.98178368849037 4.23410665337396 4.9066673767745 4.20230693240436 4.51355337573911 4.14095233125148 5.07131137337663 0.214219974943555 0.216012567422217 0.212756732217365 0.215257594289014 0.217965261864548 0.215732434402530 0.209912155855566 0.213883936258555 0.222216403965426 0.21929738282049 0.215806599627147 0.208394201012607 0.209559487297405 0.220713747257106 0.217473800763826 0.208394201012607 0.222201431017736 0.211511470197707 0.208394201012607 1 1 - 29235241 29236350 29235608.182 29235048 29236418 - gene protein_coding_gene FALSE TRUE AT1G77750.1 30S ribosomal protein S13, chloroplast, putative Identical to Small ribosomal subunit protein S13, mitochondrial precursor (mS13) (RPS13) [Arabidopsis Thaliana] (GB:Q9CA19); similar to 30S ribosomal protein S13, chloroplast (CS13) [Arabidopsis thaliana] (TAIR:AT5G14320.1); similar to Small ribosomal subunit protein S13, mitochondrial precursor (GB:Q8LPW2); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.741054057757283 -7.02188085136649 2.33511012722854e-05 0.343284539803867 7.86470525498958 9.41845731701405 -0.741054057757283 0.111516227148765
AT4G17490_at 2.89566002242892 2.88282925562078 2.77162837384187 3.01400123846835 2.38649239504772 2.47718244290568 1.48386806523382 1.41199171251251 2.13163692973145 1.22153425234507 2.26114474202489 2.50169980412799 2.16381419958330 2.49223487200838 2.57760087763701 2.19334962622619 2.02861538451706 2.17025014021994 1.40994192303084 0.247406469601626 0.241481341058242 0.238210976376277 0.241969528918370 0.234704850636600 0.240075527664770 0.244617788808927 0.229974011635534 0.238437769994355 0.239888791611997 0.231809613457075 0.229974011635534 0.239643873061682 0.229974011635534 0.23605290815848 0.232891940884607 0.234637287257466 0.234725973968555 0.244464918816432 4 4 - 9752997 9753541 9753229.727 9752836 9753879 - gene protein_coding_gene FALSE TRUE AT4G17490.1 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6); DNA binding / transcription factor Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-6). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Identical to Ethylene-responsive transcription factor 6 (Ethylene-responsive element-binding factor 6) (EREBP-6) (AtERF6) (ERF6) [Arabidopsis Thaliana] (GB:Q8VZ91;GB:O23591;GB:O80387); similar to ERF5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT5G47230.1); similar to ethylene responsive element binding factor, putative [Brassica oleracea] (GB:ABD65051.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.602311593020437 7.01975027334524 2.34154074598361e-05 0.344206489659591 7.86264248753514 4.35860322533856 0.602311593020437 0.0465321204829303
AT1G42550_at 8.4198125750319 8.34838650496685 8.48142345942405 8.10938596740137 8.5877393515436 8.26613997204472 9.36002901667429 9.33865645586858 10.0012087283462 10.4614000103963 9.35022681633366 9.62605841510731 9.69503760300682 9.31585456087802 9.02562176143826 10.0913218895143 9.74019479203087 9.00000060364073 10.5197084022061 0.128248753842951 0.117556833951380 0.119661070861250 0.128515856055848 0.119865055790098 0.124416426858649 0.122412714085343 0.118924917487640 0.120905757186712 0.117285026757183 0.121618462043474 0.119432211282703 0.118272262765988 0.126316972789915 0.124651942392652 0.119583722870002 0.117285026757183 0.117285026757183 0.119855182517537 1 1 + 15981619 15982002 15981810.273 15979855 15982392 + gene protein_coding_gene FALSE TRUE AT1G42550.1 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20610.1); similar to Os09g0553900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063884.1); similar to Os10g0539700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065181.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72608.1) -0.676224221135558 -7.01599958420539 2.35290752380257e-05 0.345853876923739 7.85900944995917 18.5179359639827 -0.676224221135558 0.0860756094977415
AT3G53610_at 7.9467705105432 8.0564436719844 8.07084429583978 7.9433035932094 8.21627505044259 8.16056217728112 7.37966764357119 7.34103996572439 6.30365456305417 6.69916707794325 7.55132695114092 7.81928581163212 7.42907079003987 7.8433480066757 7.24711333115215 7.3957679494285 7.07178075018897 7.328680476774 7.12925786016117 0.159352465324207 0.158951075304007 0.163410893223166 0.163103490418551 0.167276263950405 0.158951075304007 0.164742673246938 0.166911951693355 0.174689133402994 0.169007877150133 0.162167189610257 0.162862908205814 0.167283638874414 0.165611987459355 0.168886256689053 0.160869840559576 0.166060056447033 0.163555886942908 0.162907020867410 3 3|0 -|/ 19887536 19888692 19888171.556 19887210 19889497 - gene protein_coding_gene FALSE TRUE AT3G53610.1|AT3G53610.2|AT3G53610.3 ATRAB8; GTP binding|ATRAB8 GTPase AtRAB8 (atrab8) similar to Ras-related GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59840.1); similar to Sigma-54 factor, interaction re (GB:ABE82101.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.583434711281795 7.00942232946302 2.37298377148426e-05 0.348781154732757 7.85263320220388 14.9751083262905 0.583434711281795 0.0313849100943696
AT2G22470_at 2.28860938163317 2.62389112168870 4.53296843602908 4.79753208613772 2.62106137632583 2.11682855532043 1.84268736048079 1.67464508864941 2.3548622265154 1.99016243141422 2.21724189486652 2.02450735490654 2.49385967534652 2.08182408992634 2.79048714039428 2.12784572421413 1.44823952035024 2.23349004807196 1.87023712027932 0.246641627382354 0.245891299173921 0.268156163120815 0.273259092089209 0.237165710086345 0.249311734026150 0.238750982739045 0.245101660876565 0.252514556266665 0.243910925238211 0.23958579882381 0.241793947770889 0.253885817152150 0.248192078652621 0.237620955303478 0.240343823597082 0.237950313865331 0.240191774648192 0.244455963211047 2 2 - 9545484 9545826 9545598.909 9545277 9545959 - gene protein_coding_gene FALSE TRUE AT2G22470.1 AGP2 (ARABINOGALACTAN-PROTEIN 2) Encodes arabinogalactan-protein (AGP2). Identical to Classical arabinogalactan protein 2 precursor (AGP2) [Arabidopsis Thaliana] (GB:Q9SJY7;GB:Q9ZT18); similar to AGP4 (ARABINOGALACTAN-PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT5G10430.1); similar to 4D11_29 [Brassica rapa subsp. pekinensis] (GB:AAZ67543.1); contains domain PRICHEXTENSN (PR01217) 0.757536190140083 7.0081581197002 2.37686364965981e-05 0.349327650590502 7.85140685279923 4.93674835432275 0.757536190140083 0.117994440639257
AT3G45160_at 7.509879600842 7.58429173567667 6.87909780845023 6.88806510752715 6.34770203231972 6.11112837806575 7.88774373719215 8.17673036888594 8.7055327855827 9.58155987621807 9.39192786585162 9.83117821730153 9.26016300737223 10.0398471790840 9.04376505950048 9.02876812570605 8.70372061066866 9.37359869505281 9.81031386778706 0.194361872603480 0.180438160572725 0.194632453402028 0.213382483588626 0.207691553434051 0.209079386605408 0.190885879382809 0.183655226519078 0.192121543466258 0.18751726678031 0.185734795328144 0.187176462417623 0.180438160572725 0.182766780594425 0.187514819110422 0.183058654213181 0.191147392743769 0.180438160572725 0.186285918714159 3 3 - 16544688 16544887 16544786.455 16544436 16545067 - gene protein_coding_gene FALSE TRUE AT3G45160.1 unknown protein -0.632422055260291 -6.99953050504755 2.40352449891762e-05 0.353221960360934 7.84303093918775 16.5230414819182 -0.632422055260291 0.0659195052984081
AT3G15355_at 3.21801211359552 3.61615674773244 4.26788354740966 4.36241114082464 3.76088721624940 3.82880716027443 2.65684597023759 2.54969488326004 2.59740228753644 2.66033557660311 2.46702721978761 2.31012141955925 3.14424430729809 2.53536995022413 2.76410574924943 2.59436136354255 3.1146956207622 3.39946546295430 2.35899880388553 0.242385989268416 0.237594808233031 0.244603323438526 0.245887259624604 0.235780778128173 0.249301274666769 0.236564837447828 0.236622820342190 0.235780778128173 0.235780778128173 0.243933576477660 0.237570310681019 0.236990372548764 0.245377720315580 0.236897808094648 0.241093719186023 0.246424335804374 0.240717304259174 0.242684505294502 3 3 + 5185090 5185780 5185315.273 5183746 5186936 + gene protein_coding_gene FALSE TRUE AT3G15355.1 UBC25 (ubiquitin-conjugating enzyme 23); small conjugating protein ligase similar to UBC26 (ubiquitin-conjugating enzyme 25), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G53020.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE86204.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.648540750740151 6.99876408869758 2.40590834404528e-05 0.353548231157454 7.8422863185857 6.19763040212158 0.648540750740151 0.0741411683677908
AT2G04795_at 7.23535548380794 7.40460174314714 6.9051089811442 7.08414293286389 7.02590313249462 7.12838066741241 7.68922948423412 7.88919842565265 7.19588435120417 7.60346705098392 6.8236428577352 5.75235646266550 7.0241401760104 7.00510094495073 5.55965648711379 7.2515135146173 7.2702693007672 6.64452099246392 7.34793841299346 0.166688795783093 0.154415982280087 0.150496255806829 0.158232713859257 0.156684704406393 0.155992559720893 0.165621781386296 0.167541371955807 0.161017371051455 0.155582075683661 0.164774033199566 0.181174312170931 0.151245880960675 0.151106476876902 0.183912097916902 0.153645694937704 0.153734852036422 0.163000993059000 0.159001368190342 2 2 + 1683065 1683282 1683168.182 1682950 1683472 + gene protein_coding_gene FALSE TRUE AT2G04795.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35732.1) -0.617371101042513 -6.9947634009617 2.41839328501094e-05 0.355358709299507 7.83839791066472 14.3196551215618 -0.617371101042513 0.0577044995928177
AT1G54210_at 6.44759035719108 6.57651368586633 7.25479051264637 7.40235496703158 8.04235259183921 7.3985995472146 6.1073079297762 5.94195632086401 5.583150880673 5.33794076743909 5.85901851220578 5.5919214866312 5.75719878087465 6.06718372652758 4.90144295164942 6.20544368337108 5.93596600235197 5.5228541801948 5.472578127421 0.259288742252955 0.258042015007358 0.269226608060589 0.260950508785518 0.258042015007358 0.271154395620448 0.262354068688811 0.265407555451241 0.284263710173159 0.258509563811797 0.266558723313782 0.260316834807559 0.258042015007358 0.262278413750238 0.273323340302144 0.258550753536761 0.272519093209965 0.268568299592013 0.258538000469412 1 0|1 /|+ 20245128 20245509 20245326.429 20244912 20246230 + gene protein_coding_gene FALSE TRUE AT1G54210.1 ATG12a (AUTOPHAGY 12); protein binding Identical to Autophagy-related protein 12a (AtAPG12a) (ATG12A) [Arabidopsis Thaliana] (GB:Q8S924); similar to APG12/APG12B (AUTOPHAGY 12) [Arabidopsis thaliana] (TAIR:AT3G13970.1); similar to Chain A, The Crystal Structure Of Plant Atg12 (GB:1WZ3); contains InterPro domain Autophagy protein Apg12; (InterPro:IPR007242) 0.76087720244499 6.9890044447522 2.43648756082039e-05 0.35799311731134 7.83279617581896 12.4937758677138 0.76087720244499 0.119915223351818
AT1G07010_at 8.47339859885585 8.7889116583553 8.7710017945213 8.87892163732278 8.33863391566243 8.18022889347349 10.1181593800654 10.3115897777516 9.38015236774106 9.75064282582743 8.96549247005007 9.04595563571223 9.1363268032595 9.33988133172762 8.79092736917606 9.61971078899 9.19555838132406 9.0998383636543 9.53528468706963 0.140642085621430 0.13277612865956 0.149549598055016 0.140196007107683 0.143391045166064 0.139011485095377 0.135849296614897 0.137004979340589 0.141209062598574 0.130338041105113 0.136623951778250 0.130338041105113 0.131979686102107 0.136253182610661 0.137740864137817 0.133327287311043 0.147522457482983 0.135336933121402 0.135248246962296 1 1|0 +|/ 2154065 2154918 2154396.7 2152886 2155268 + gene protein_coding_gene FALSE TRUE AT1G07010.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G18480.1); similar to putative protein-tyrosine-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAM22720.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.643483430369003 -6.98843916616984 2.43827144954182e-05 0.358230841366685 7.83224604924657 18.3348913836007 -0.643483430369003 0.0721251175145349
AT1G77670_at 6.48836788450652 6.83470421741956 5.99668188457243 5.88947511429137 5.57377313169884 6.29264394705666 7.5501135529002 8.19204689065764 6.81484234761816 7.01261489152471 6.3185391684186 6.35599739428441 5.84961322405399 5.99259851703032 6.25406051647524 6.6260987548138 5.95147746452045 6.2054471766761 6.43101685167512 0.190301200976483 0.190305478944508 0.190089603586592 0.19095657812489 0.197685628510180 0.191064086055346 0.197574133782659 0.203906267406193 0.209232524777847 0.194987698947110 0.186425335775311 0.188030962628193 0.191814550889762 0.197854516519563 0.187905930762115 0.186425335775311 0.192773799657419 0.186425335775311 0.196875926708532 1 1 - 29194045 29194506 29194286.636 29193795 29195869 - gene protein_coding_gene FALSE TRUE AT1G77670.1 aminotransferase class I and II family protein similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to Os09g0453800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063347.1); similar to putative asparate aminotransferase [Hordeum vulgare] (GB:BAE86874.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.943380143435686 -6.98531439578725 2.44815784129905e-05 0.359658868465244 7.82920413238982 13.0757526898746 -0.943380143435686 0.178195539932137
AT4G37660_at 4.16075466337769 4.08750743246776 3.34542556306026 3.2448900111166 2.71446828546629 3.11661268773375 4.08830988095099 4.07835749015036 2.57879054378644 3.29735928433844 2.55047958534539 2.97139616247780 2.35569746004917 2.39827514320590 2.87026728110383 2.34358489975445 3.11362423333393 2.52686185812569 2.91819430504618 0.239947860921621 0.237594054771606 0.246512443385807 0.243608123296314 0.239550899739720 0.253563812716173 0.23478759184705 0.23478759184705 0.241233486153789 0.24360658534977 0.237602791269256 0.237398238769162 0.241146439597559 0.235068141185957 0.239368695928953 0.251761131450848 0.24401229603527 0.23629836751295 0.241555319401267 4 4 + 17695543 17695939 17695717.909 17695490 17696264 + gene protein_coding_gene FALSE TRUE AT4G37660.1 ribosomal protein L12 family protein similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT1G70190.1); similar to unknown [Solanum tuberosum] (GB:ABA40429.1); similar to Os07g0626100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060333.1); contains InterPro domain Ribosomal protein L7/12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) -0.644278973179156 -6.98083129688059 2.46241706963401e-05 0.361729067529236 7.8248372270929 6.3909014379479 -0.644278973179156 0.0728664380079718
AT1G76410_at 5.31517318458442 5.67460150226741 3.85866601618477 4.40817259299065 6.00043559702627 6.48583492610998 3.18796728233249 3.56602335279394 3.84973685122158 3.23936186512354 4.44227956003414 5.12132328864587 4.56757790072426 4.60246140645939 4.37742449110181 4.81899184230708 3.86769530187496 4.92355667846022 3.73111198701667 0.249410225629504 0.255708394989333 0.254378799740347 0.249869498398944 0.257616185227206 0.260429929609449 0.248788974451773 0.251875676420758 0.251178555745139 0.259989443189926 0.254706985096951 0.249867893299850 0.247756693758059 0.252408495657076 0.25766232837296 0.250257108884234 0.253405092340488 0.247756693758059 0.247756693758059 1 1 + 28673822 28674342 28674089.818 28673742 28674540 + gene protein_coding_gene FALSE TRUE AT1G76410.1 ATL8; protein binding / zinc ion binding Identical to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8) (ATL1R) [Arabidopsis Thaliana] (GB:Q8LC69;GB:Q9S783); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G20823.1); similar to zinc finger protein [Brassica rapa] (GB:ABK56013.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.867881430081861 6.97548915417055 2.47952517626978e-05 0.364217453142268 7.81962942211041 8.91055966169702 0.867881430081861 0.155718919014723
AT3G50500_at 10.746719558963 10.7564649228198 10.6238060617798 10.6726393173614 11.1750538549475 11.1123752709350 9.76467195456144 9.60419529735728 9.96028127577527 9.65316342113296 10.2740569655408 9.98205085041614 10.3929835800161 10.2222673017273 10.1213482779589 10.0159286397366 10.3915631945451 10.4177581487283 9.6212561103675 0.0706967256718881 0.068361399115973 0.0712098080414894 0.0715577256512137 0.068361399115973 0.0687149024278603 0.0719604086708157 0.0695789258246873 0.0825182699092656 0.0701804436750024 0.0714438349678856 0.0695413188847192 0.0724418426549561 0.0709767202170126 0.0718120963885131 0.0699479730287731 0.068361399115973 0.0725940826626612 0.0710527457200073 3 3 - 18752877 18753376 18753070.909 18752571 18755054 - gene protein_coding_gene FALSE TRUE AT3G50500.1 SPK-2-2 (SNF1-RELATED PROTEIN KINASE 2-2, SNF1-RELATED PROTEIN KINASE 2.2); kinase/ protein kinase encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth. similar to SNRK2-3/SNRK2.3/SRK2I (SNF1-RELATED PROTEIN KINASE 2-3, SNF1-RELATED PROTEIN KINASE 2.3), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT5G66880.1); similar to Os03g0764800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051371.1); similar to serine/threonine protein kinase SAPK8-like protein [Solanum tuberosum] (GB:ABA40436.1); similar to Os03g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050653.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.58015002178615 6.9740050081535 2.4843007469742e-05 0.36489409371557 7.81818180181693 20.5430632243034 0.58015002178615 0.0310347480715156
AT2G01250_at 10.6898060808450 10.7345496400982 9.91749806500408 9.92133579008816 10.1387004008333 9.93160003665508 10.8785910568827 10.9572143512223 10.5393837050453 10.1826352371487 9.98855042355022 10.3862437432991 9.85002048010068 9.99967195787729 10.540348943923 9.7133219114630 9.44258881568722 9.85327202179788 10.2124513694785 0.0861064560614033 0.082964011631764 0.0848450217997636 0.0850380241280397 0.0807786467457926 0.0806034545914998 0.0841055159121325 0.0862301156855768 0.0822898920726637 0.0812226479610366 0.0838438241066643 0.0809669832426974 0.0811586279603682 0.0797301805677486 0.08338141276239 0.0828575248418588 0.0867430228209058 0.0831563707545137 0.0829948840123792 2 2|0 -|/ 132980 133953 133435.375 132696 134454 - gene protein_coding_gene FALSE TRUE AT2G01250.1|AT2G01250.2 60S ribosomal protein L7 (RPL7B) Identical to 60S ribosomal protein L7-2 (RPL7B) [Arabidopsis Thaliana] (GB:P60040;GB:O80581;GB:Q42208;GB:Q9ZU42); similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to 60S ribosomal protein L7 (RPL7C) [Arabidopsis thaliana] (TAIR:AT2G44120.2); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998)|similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517) -0.588747262897718 -6.97314403828084 2.48707563511745e-05 0.3652767985297 7.81734186228154 20.5377831232552 -0.588747262897718 0.0391152916957519
AT4G39980_at 10.5005449784896 10.3255304940396 11.1138259540495 10.9903717941388 10.2060611042140 10.1346900364486 9.70584112196936 9.65774104977864 9.7298331914738 9.63766969194404 10.3211326480053 10.5519094331360 9.94499434198594 10.0492872715658 10.3807443795689 10.1030689397160 9.80622565259363 10.0731789287733 9.24819586757205 0.0736811068604226 0.0735576287215848 0.0754348483970403 0.0746788367576869 0.0735576287215848 0.0797556624817802 0.0750532822635942 0.0757101920043 0.0804871421342627 0.0761253925577838 0.0748602110309588 0.0736081202967018 0.0757825847349304 0.0738687555633262 0.0755682174956261 0.0735576287215848 0.0795227912366566 0.0750243982810589 0.0826017830680705 4 4 + 18540853 18541800 18541479.727 18539570 18542087 + gene protein_coding_gene FALSE TRUE AT4G39980.1 DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae. Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DHS1) [Arabidopsis Thaliana] (GB:P29976;GB:Q9SMQ7); similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G33510.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G22410.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] (GB:CAA75386.1); similar to 3-deoxy-D-arabino-heptulosonate y-phosphate synthase (GB:AAA32784.1); similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (GB:P37822); contains InterPro domain DAHP synthetase, class II; (InterPro:IPR002480); contains InterPro domain Calycin-like; (InterPro:IPR011038) 0.589537130115782 6.97072352332774 2.49489475034495e-05 0.36640024303566 7.81497984739362 20.1755177915150 0.589537130115782 0.0399446923847877
ATMG01410_at 1.79703571361708 2.3818393325565 1.93498359093123 2.66116038707448 0.720818081292534 0.917341796641075 1.87408755055838 2.10670193926744 2.73790170199763 3.05170764383959 1.68625560552486 1.85648516297500 1.86497108002904 2.06586254703000 1.39809224126144 2.68806035518652 1.67199035691901 2.72495023035740 4.22301379528796 0.285675527487943 0.298402819600459 0.292887248448927 0.286696818997938 0.287082636488603 0.294846219037415 0.289598935228803 0.297896971249956 0.313886695406025 0.287839469923959 0.29150621430161 0.297661300909483 0.285675527487943 0.301164873562628 0.297955413845539 0.294832297618240 0.290277526165317 0.330671747807740 0.305320595131757 M M - 366104 366626 366387.444 366086 366700 - gene protein_coding_gene FALSE TRUE ATMG01410.1 Identical to Hypothetical mitochondrial protein AtMg01410 (ORF204) [Arabidopsis Thaliana] (GB:P92567); similar to hypothetical protein BrnapMp025 [Brassica napus] (GB:YP_717123.1); contains InterPro domain Mitovirus RNA-dependent RNA polymerase; (InterPro:IPR008686) -0.912148884823167 -6.96367442722267 2.51781655417263e-05 0.369741360980251 7.8080958683797 4.4653082962184 -0.912148884823167 0.169739988964968
AT3G60420_at 9.24320349479847 9.48863682732006 11.0167990546578 10.9852795770633 8.30604092269813 8.1467343812504 6.8772260054868 6.66853430263184 7.26173090147541 6.66894721181122 6.35856813176861 6.23647791103273 5.19338911864784 6.51288867117737 5.60613543776314 6.32371952599787 6.51794255582682 6.42646649410845 5.40651315890802 0.260323535165486 0.257238056093267 0.270611636520387 0.269354230731494 0.251416879045250 0.256638745442701 0.276399400415395 0.251563989915196 0.273595787793673 0.254349970981882 0.253080555149608 0.250409061322944 0.253067263937903 0.25234334870347 0.252483133654402 0.257633461039958 0.252307471363892 0.2628115436095 0.259763753704076 3 3|0 +|/ 22345691 22346654 22346170 22345406 22346760 + gene protein_coding_gene FALSE TRUE AT3G60420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60450.1); similar to pRIB5 protein [Ribes nigrum] (GB:CAA07566.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain PRIB5; (InterPro:IPR012398) 0.6227656915418 6.96314019829026 2.51956291996718e-05 0.369972619167981 7.80757383447516 15.1378962731660 0.6227656915418 0.0624345634620553
AT2G27690_at 2.69210520964381 2.93153407556484 3.92622635430954 5.0121134942705 1.94158283852217 2.36892584825015 1.49197156401255 1.06358884138347 1.62910147147229 1.15300849436530 1.96329820318556 2.02906501306872 1.97779414161327 2.53866570571452 2.14663920368979 2.76444913414177 2.42915953974523 2.40223100263787 1.36391196533877 0.248772460283128 0.249307240685028 0.285283872309714 0.269541261912639 0.244414003809343 0.249405936091293 0.248180468980432 0.244469601845817 0.240812265306505 0.241275621235654 0.241731916469468 0.243193488993999 0.244411368554465 0.245750734405223 0.248379034091320 0.241912073358816 0.24518063059388 0.239952456038863 0.242730258420779 2 2 + 11817372 11817870 11817654.182 11816383 11818292 + gene protein_coding_gene FALSE TRUE AT2G27690.1 CYP94C1 (cytochrome P450, family 94, subfamily C, polypeptide 1); oxygen binding member of CYP94C similar to CYP94B3 (cytochrome P450, family 94, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G48520.1); similar to cytochrome P450 monooxygenase CYP94C9 [Medicago truncatula] (GB:ABC59093.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.08340882188470 6.96305842343674 2.51983035234154e-05 0.369986690634309 7.80749392236053 4.51021605492798 1.08340882188470 0.219077284790914
AT2G05990_at 5.65873444678483 5.75033027842575 3.40239085740155 3.48772221200290 4.34768657914727 4.72657904473869 6.74085822628025 7.3408218834962 6.02304423080816 6.73569244389654 8.08505420088849 8.37932009364103 6.95228727366992 7.38337748344682 7.97784145360883 6.4827795636887 6.05750581024563 6.93115490704175 6.56920995436268 0.207761216887566 0.202862697539039 0.213278847715692 0.204458413241870 0.217671232481443 0.213116031645027 0.200372268070213 0.205091726160137 0.206749474997825 0.202508753823301 0.204975552367587 0.201202226687194 0.202468883301834 0.20768582244345 0.207152649171532 0.203572085782804 0.211056593801839 0.205316117523064 0.208548445386366 2 2|0 +|/ 2323790 2324826 2324209.4 2322219 2325143 + gene protein_coding_gene FALSE TRUE AT2G05990.1|AT2G05990.2 MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ oxidoreductase Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves. similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29260.1); similar to enoyl reductase [Brassica napus] (GB:CAA64729.1); similar to enoyl-[acyl-carrier protein] reductase [Brassica napus] (GB:CAC41367.1); similar to enoyl-[acyl-carrier protein] reductase [Brassica napus] (GB:CAC41366.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.771537656750529 -6.96184783241483 2.5237929757244e-05 0.370543284695857 7.80631078411461 12.0437974283520 -0.771537656750529 0.124693916496459
AT3G29270_at 6.76597295760316 6.8989439346509 7.15324472015223 7.01371067116536 7.85389043923832 7.59503183123775 6.78385141543229 6.45653736438425 5.1573465976442 5.5667626727251 5.8719579763542 5.7635405563506 6.33712173876415 6.27170308598307 5.85104098277415 6.2829494487947 6.58000892084992 5.68189760591628 5.61062944982286 0.205370471125056 0.188874436586065 0.19638065144942 0.185403041144013 0.188225424929458 0.197129063895011 0.188291751917713 0.193303819489756 0.204588948458875 0.195343107102357 0.184288366340965 0.185478484415162 0.183484247868563 0.190688754026015 0.197332991144600 0.187023811654387 0.192942265624038 0.204832045129041 0.184201592238048 3 3 + 11236827 11237249 11237060.818 11235479 11237695 + gene protein_coding_gene FALSE TRUE AT3G29270.1|AT3G29270.2 ubiquitin-protein ligase| similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G69330.1); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.656378815086714 6.96063320800052 2.52777552652643e-05 0.371102725049345 7.80512347210048 12.8276181398351 0.656378815086714 0.0795474329950227
AT3G26935_at 4.79743057677239 4.47554794019344 4.93381604494154 5.08847499999214 5.14388873342496 4.99765338604739 5.12770991829696 5.28032330039317 4.52059618298815 4.12775850472732 5.75252614902171 5.56142507612416 5.56288175415285 5.3987869543461 5.74312043450975 5.29963743844587 5.41754547199 4.80631117448727 4.20034103625869 0.226372912053329 0.219658190100701 0.236691319607105 0.218145586229300 0.235116251277159 0.239567487788551 0.231971286607104 0.224106321966419 0.22203547971285 0.22218075633152 0.222448786152297 0.226165421993082 0.223372829454990 0.232963102082767 0.220579170952350 0.237413738109064 0.230308125285459 0.218145586229300 0.218145586229300 3 3|0 -|/ 9934520 9935185 9934823.444 9933837 9936734 - gene protein_coding_gene FALSE TRUE AT3G26935.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT5G41060.1); similar to Os09g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063622.1); similar to Os08g0535400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062355.1); similar to P0482D04.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB89658.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.64029304458209 6.9605689276079 2.52798647911787e-05 0.371108415134503 7.8050606306647 9.84344455315413 0.64029304458209 0.0718131912000235
AT3G62930_at 5.12288921306318 4.7794479299830 3.68720073597086 3.75532829106778 4.48841486134734 4.40842115835182 4.62390771901746 4.7254361981861 3.7936633279441 4.38256050973134 2.52752767012996 3.71128875310737 3.58138574242648 3.75283182356835 3.90167810645124 4.76787532882636 4.59168374337303 3.10342966836491 4.62421576621552 0.215611161408809 0.211191153388595 0.205634566645543 0.205634566645543 0.208053491732546 0.215210045648180 0.210422233567281 0.214584148640912 0.219808571252745 0.214946962779303 0.217560542422018 0.205634566645543 0.211162501114229 0.207832151389136 0.210307292232536 0.205634566645543 0.205634566645543 0.209243766502364 0.211172886784543 3 3 - 23272515 23272744 23272635.818 23272417 23272902 - gene protein_coding_gene FALSE TRUE AT3G62930.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S6 (AtGrxS6) (GRXS6) [Arabidopsis Thaliana] (GB:Q9LYC8); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G03020.1); similar to Fgenesh protein 66 [Beta vulgaris] (GB:ABD83292.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.626339800072006 -6.95947321843663 2.53158523837160e-05 0.371611397140568 7.80398934957342 8.45339366628741 -0.626339800072006 0.0645891157589617
AT1G55520_at 6.52130284569239 6.98791456488672 7.45394781287577 7.25208044562243 8.1089448369726 7.37713014058606 6.97530309290161 6.52471068986977 5.79264321895739 5.59027490082305 6.92724240829238 6.91913493628347 6.76170623366884 6.9878374629258 6.41424699710529 7.80735808260031 6.93544541144283 6.83680099283585 6.32397740582215 0.261973037219628 0.262550588856574 0.269259457940563 0.270541620160893 0.262141277954338 0.271026098108938 0.273494204083590 0.264756751786568 0.270684827500427 0.282153225338398 0.264988864132676 0.259743729597592 0.262078267490586 0.261976997647222 0.269689520144168 0.26040276501101 0.263507388415115 0.286098775500806 0.270495829060636 1 1|0 -|/ 20729862 20731111 20730499.111 20729392 20731757 - gene protein_coding_gene FALSE TRUE AT1G55520.1|AT1G55520.2 TBP2 (TATA binding protein 2); DNA binding / RNA polymerase II transcription factor TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex. Identical to TATA-box-binding protein 2 (TATA-box factor 2) (TATA-binding factor 2) (TATA sequence-binding protein 2) (TBP-2) (Transcription initiation factor TFIID TBP-2 subunit) (TBP2) [Arabidopsis Thaliana] (GB:P28148); similar to TBP1 (TRANSCRIPTION FACTOR IID-1), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G13445.1); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain TATA-box binding; (InterPro:IPR000814); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.921070533893371 6.95412293560247 2.54923694477382e-05 0.374176998753902 7.7987556318813 13.5756768407652 0.921070533893371 0.172800362975234
AT2G41900_at 6.7099083168724 7.03199083835012 7.14624432015449 7.15229760801848 7.45656235498501 7.39366390219702 7.34102949378251 7.11405639548661 6.49125510237138 6.63729317993843 7.48745975958922 7.84548055634961 7.95996084167308 7.53260155326466 6.6477302645785 7.65703779545336 8.04103252317424 6.92872827667129 6.31847841964582 0.161900952731808 0.155102849459913 0.163835579880082 0.159450788474454 0.160723476716763 0.158965529281060 0.160339809485055 0.156891165905426 0.157940875528661 0.162554237869859 0.157237910787752 0.154772133051590 0.155274487228518 0.15876044750436 0.165119727427426 0.155410992844225 0.161924287026553 0.16259516399909 0.169881794981207 2 2 + 17500025 17500546 17500243.909 17497483 17501000 + gene protein_coding_gene FALSE TRUE AT2G41900.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G12850.1); similar to Os03g0698800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050982.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE84364.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38462.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.634053748787439 6.95158212840805 2.55766583744872e-05 0.375388614962349 7.79626860112319 14.1656422438956 0.634053748787439 0.0690587414127816
AT3G01550_at 5.9774230719018 7.10911673573228 6.69949936691082 6.59479153572856 5.85283720585735 5.44887331153534 9.6738310687406 9.55780141895215 9.39169656954513 8.49048373641316 9.14211922805459 9.28885956662051 8.40103244635544 8.62230796575472 8.70505894178464 8.91307654941182 7.47734222791622 8.39562784136058 8.4688596699749 0.302137421660886 0.263886159588925 0.284089073051507 0.280749793506216 0.280774809821590 0.30898444227478 0.267818216189607 0.263886159588925 0.264434072467758 0.267727937401499 0.269682619630775 0.264973390961400 0.268577969117308 0.275708155627692 0.263886159588925 0.263886159588925 0.281628664431314 0.272230153943152 0.263886159588925 3 3 - 217128 217957 217515.636 216814 219061 - gene protein_coding_gene FALSE TRUE AT3G01550.1 triose phosphate/phosphate translocator, putative similar to CUE1 (CAB UNDEREXPRESSED 1), antiporter/ triose-phosphate transporter [Arabidopsis thaliana] (TAIR:AT5G33320.1); similar to phosphate/phosphoenolpyruvate translocator precursor (GB:AAB40648.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853); contains InterPro domain Tpt phosphate/phosphoenolpyruvate translocator; (InterPro:IPR004696) -1.04802230744705 -6.95118157477407 2.55899736518364e-05 0.375558453314351 7.79587643240108 15.8152007583624 -1.04802230744705 0.209699411866229
AT1G55170_at 6.92085532472597 6.97251695361886 7.44980296437245 7.14649776515151 8.1982975473559 7.35179524350416 6.82427193544999 6.82407921931486 5.36192814651791 5.18878487668527 6.08567568707585 6.65501726026589 6.59577910656042 5.98954168649186 5.85127015555126 6.38187219723648 5.93923909766815 6.06880463503026 4.79947770491346 0.265930090943948 0.261338917691349 0.263061979472733 0.266724967705799 0.261338917691349 0.277259345907149 0.265900441033691 0.262219323194430 0.301465038972294 0.274058219274869 0.264145074054797 0.261338917691349 0.268989717587361 0.275133793539657 0.261338917691349 0.264111877715848 0.294196264305630 0.277345950349558 0.275033644181244 1 1|0 +|/ 20584522 20585349 20585005 20583941 20585642 + gene protein_coding_gene FALSE TRUE AT1G55170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14750.1); similar to myosin-like protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96059.1); contains InterPro domain t-snare; (InterPro:IPR010989) 0.865168628674032 6.94987053748816 2.56336074635094e-05 0.376173189527001 7.79459266259224 12.867329729657 0.865168628674032 0.155867325446024
AT3G15300_at 3.06680609983380 3.302888095141 4.24432630462219 3.98143162656786 3.88835285529539 4.01055680729872 3.16120092602791 3.29541738616451 2.93744360486550 3.09905319126608 3.17224247209304 3.2164973269783 3.60874628678925 3.28641102514400 3.29919437857183 2.89948179147556 3.62548489638629 3.28284092266002 2.53549133107461 0.207677200491299 0.205005771086565 0.208092390512861 0.212526972675881 0.208189369398553 0.210694449887712 0.205090770121205 0.212085478310947 0.216747545575478 0.209527159093675 0.208989701686993 0.208320623069684 0.209963331051726 0.21041277898114 0.205900244135784 0.206544827378262 0.209816022364209 0.20842738124737 0.210551159725007 3 3 - 5147566 5148046 5147770.545 5147412 5148312 - gene protein_coding_gene FALSE TRUE AT3G15300.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G53830.1); similar to DNA-binding WRKY; VQ [Medicago truncatula] (GB:ABD32365.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.633060891715564 6.94736814358652 2.5717113782766e-05 0.377372927648308 7.79214156218603 6.69696839424276 0.633060891715564 0.0687434868054004
AT3G60390_at 5.42435159902694 6.01358649722633 4.50333552716631 4.166940922 5.00623050426835 5.17750305976121 5.57658264433396 5.73861950876663 5.32076137013582 5.46098986146132 4.91200091444027 5.53016760126064 5.41378272991003 5.31899440477427 5.08505934437367 5.12338588871689 5.06514024908321 4.83511074707098 6.38477204372682 0.259727066535107 0.262882039707685 0.260546808807379 0.264619147870057 0.258405770392785 0.253682070337242 0.263399170535111 0.260471578113484 0.253682070337242 0.257202060055855 0.257090380586175 0.253682070337242 0.255095342643029 0.260564033811966 0.255921998333689 0.253682070337242 0.268969707290198 0.253682070337242 0.270854447973509 3 3|0 -|/ 22331836 22332814 22332236.6 22331570 22333561 - gene protein_coding_gene FALSE TRUE AT3G60390.1 HAT3 (homeobox-leucine zipper protein 3); transcription factor Encodes homeobox protein HAT3. Identical to Homeobox-leucine zipper protein HAT3 (Homeodomain-leucine zipper protein HAT3) (HD-ZIP protein 3) (HAT3) [Arabidopsis Thaliana] (GB:P46602;GB:Q546G9;GB:Q9M220); similar to homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 4 [Arabidopsis thaliana] (TAIR:AT2G44910.1); similar to homeobox protein (GB:AAA56904.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain HD-ZIP protein, N-terminal; (InterPro:IPR006712) -0.768250874596868 -6.94227155372026 2.58880944561629e-05 0.379856009955278 7.78714638667789 10.6422086128496 -0.768250874596868 0.124304495169461
AT3G48560_at 10.4601638019270 10.4664203146460 9.86310505770903 10.1694986110691 10.2798379803251 10.1078714184991 11.0818306804948 11.1458789480409 11.3277335234769 11.3262205044307 10.6415851149006 10.7736714928940 10.8291490107545 10.8172792831747 10.6502209094926 10.9710419959018 10.723587478544 10.7917858922633 11.3373622345732 0.0676723252478237 0.0698830056274146 0.076295881838966 0.0714405289979638 0.0745031909249923 0.0704613108938794 0.0688789135120389 0.0673560270948033 0.0714646062237393 0.0670863913624244 0.0673719417578218 0.0676336715245659 0.0670019403058155 0.0673226696866149 0.0677793228671656 0.0670942929980331 0.0694351311124579 0.0688594101487496 0.0692911117524745 3 3 - 18012544 18013036 18012757.727 18012297 18014566 - gene protein_coding_gene FALSE TRUE AT3G48560.1 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding. Identical to Acetolactate synthase, chloroplast precursor (EC 2.2.1.6) (Acetohydroxy-acid synthase) (ALS) (CSR 1.2) [Arabidopsis Thaliana] (GB:P17597;GB:Q5FV34); similar to pyruvate decarboxylase family protein [Arabidopsis thaliana] (TAIR:AT5G17380.1); similar to acetolactate synthase 2 [Camelina microcarpa] (GB:AAR06607.1); similar to acetolactate synthase 1 [Camelina microcarpa] (GB:AAR07633.1); similar to acetolactate synthase 1 [Camelina microcarpa] (GB:AAR07632.1); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP binding region; (InterPro:IPR012001); contains InterPro domain Thiamine pyrophosphate enzyme, central region; (InterPro:IPR012000); contains InterPro domain TPP-binding enzymes; (InterPro:IPR000399); contains InterPro domain Thiamine pyrophosphate enzyme, C-terminal TPP-binding; (InterPro:IPR011766); contains InterPro domain Acetolactate synthase, large subunit, biosynthetic; (InterPro:IPR012846) -0.619571888148055 -6.93971901878797 2.59741853521825e-05 0.381093247487222 7.78464310278218 21.4994403022893 -0.619571888148055 0.0618148818470117
AT2G44770_at 6.85953757127373 7.15573357872007 6.89790350018765 7.31998574890136 7.9588473383837 7.7593801682341 7.69200229723972 7.56911607837384 6.24556168535719 5.99709129580442 7.47582480361637 7.71212748514537 7.39238028275129 7.47109390641064 7.54578996638682 7.30040467664625 7.30302367931058 7.67965177147627 6.52519796921993 0.159799513200932 0.156282723934381 0.166420785515336 0.165720330588801 0.157643980227908 0.157899708395082 0.161363754725564 0.164500837743707 0.187670971291418 0.167291771294158 0.162699611397167 0.156282723934381 0.157797847674240 0.165285968891297 0.160256482896823 0.156282723934381 0.173048172273881 0.158024600450388 0.162089324511217 2 2|0 +|/ 18465522 18466918 18466142.2 18464397 18467458 + gene protein_coding_gene FALSE TRUE AT2G44770.1 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT3G60260.4); similar to Os04g0545100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053465.1); similar to Os02g0652300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047599.1); similar to phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93689.2); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) 0.697009281099483 6.936349133135 2.60883145830087e-05 0.382741663247320 7.78133666344689 14.2720569792952 0.697009281099483 0.098012770931289
AT1G01940_at 5.99673826391188 5.92687585551453 6.16192871890284 5.73796680819064 6.46197852442459 6.47205175095392 5.43082812314576 5.45780187909947 4.53712816354114 4.24580442676681 5.18671761963551 5.8840657533151 5.6538503490956 5.19261637320331 5.82679358100398 5.37819924257754 5.11608538921308 4.72525810434343 4.9882813104285 0.219309888632426 0.222118143484409 0.223620398460921 0.220970804380300 0.216929790236472 0.216237477464805 0.221210664773865 0.215308966248137 0.222021733981323 0.225341564518342 0.215308966248137 0.217230718391031 0.218207649125414 0.215308966248137 0.219249384088521 0.215308966248137 0.226129805687234 0.217185619518739 0.222546558452784 1 1 + 323211 324679 323995.9 323027 324917 + gene protein_coding_gene FALSE TRUE AT1G01940.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G67530.1); similar to Peptidyl-prolyl cis-trans isomerase-like 3 (PPIase) (Rotamase) (GB:Q5KHA8); similar to Os06g0130500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056690.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.642732044084858 6.92762682900548 2.63862237868379e-05 0.387085902952912 7.77277024671636 10.9361977080816 0.642732044084858 0.0745248032556908
AT1G57765_at 5.13961515580695 5.41205675887509 5.71522633724805 6.10079867221377 6.22549008559975 6.24417240486604 5.24873639279842 5.48074061327108 5.95070336622488 4.81490064837072 6.84683032435594 5.96957477722326 5.74251150998500 6.56542837572426 5.66434696969356 5.93746857966445 5.51659495201941 5.53861544582083 5.33219074391268 0.213784387155382 0.217207136848062 0.207102970361000 0.219186037837609 0.213612100451061 0.201987436005735 0.202727094434539 0.218253438471701 0.251726203779181 0.21752535855979 0.201820755784690 0.201820755784690 0.228182406132813 0.216851947689791 0.202916679540684 0.208553893663691 0.236290259638131 0.203534899461894 0.202329659219719 1 1 + 21397164 21398078 21397893 21397016 21398627 + gene protein_coding_gene FALSE TRUE AT1G57765.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09645.1); similar to Os05g0419600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055573.1) 0.678937212717715 6.92348332632135 2.6529022256296e-05 0.389154227477606 7.76869658388928 11.3651560290750 0.678937212717715 0.0910907937535008
AT3G18130_at 6.01777128810776 6.80259654402949 5.16927477487538 5.03130888721769 4.51655145433571 4.39134746110184 7.54413757413662 7.36352923864018 4.5031588945737 4.76715868599708 4.96274207042954 6.3146759984605 4.65677143755347 4.43182608711008 6.90699394944208 4.31336679172668 4.21133171840888 4.73848082861603 4.39668868329322 0.264189092932970 0.266107101444642 0.259119955210275 0.263074643431696 0.259119955210275 0.259119955210275 0.265175424323019 0.269446705608288 0.260522842603079 0.259119955210275 0.264257354546186 0.268596124278220 0.265406264150006 0.272259397754389 0.273781709899869 0.261794352282116 0.271794028840024 0.2658237504671 0.262267644810231 3 3 - 6211121 6211821 6211633.818 6210910 6212439 - gene protein_coding_gene FALSE TRUE AT3G18130.1 guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.82176658062439 -6.92336759511772 2.65330226170407e-05 0.389186375746754 7.76858276437975 10.6659108352255 -0.82176658062439 0.143048358405437
AT4G15500_at 4.04332461634326 3.98452568928569 3.11172750963695 2.79431371464835 2.82620139101477 2.79117120275083 3.41329800505371 3.45850196415713 4.05432995916517 3.75275831683776 3.69510626447756 4.31218350328347 3.37612879294120 3.54781518860247 3.78884408646230 3.50226402602403 3.28452495672088 3.50940706652865 4.19846041654163 0.218658678759686 0.224369614381333 0.228945101075318 0.223914330192384 0.23445087722942 0.223750223842152 0.233793769233510 0.224850471386276 0.229139986253846 0.220912726101898 0.223061317387501 0.22308640773944 0.228127660154376 0.218288148769932 0.225484785414237 0.215699738839187 0.228928418213652 0.223248088792242 0.218239439829991 4 4 - 8857171 8857653 8857429.273 8856988 8858570 - gene protein_coding_gene FALSE TRUE AT4G15500.1 UGT84A4; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. similar to UGT84A2, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT3G21560.1); similar to UGT84A3, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15490.1); similar to hydroxycinnamate glucosyltransferase [Brassica napus] (GB:CAJ77650.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.609437221374334 -6.92303270642634 2.65446020162804e-05 0.389329677772784 7.76825339557511 7.11732491151713 -0.609437221374334 0.0567343142195825
AT1G01840_at 2.78708436197477 2.90106881614723 2.66063739283588 2.75097154503233 2.53918630643651 2.67358386214422 3.95334567596775 4.24573585709413 3.63226818753034 3.33717718568856 3.06886168752432 2.80638261352406 3.32474117744159 3.72342339965294 3.06141759648072 3.28951022941992 2.77209603658679 3.43949357000431 3.83242204407533 0.238214290891515 0.23885563799781 0.249313154434039 0.243656231221624 0.231400709729063 0.248761171119804 0.231400709729063 0.240679228135912 0.233950549955178 0.231736851032817 0.231400709729063 0.237813565627433 0.235808874279871 0.234299724851892 0.231400709729063 0.231400709729063 0.241463285863057 0.237687875265158 0.23578300133926 1 1 + 303722 304081 303929.273 303537 304358 + gene protein_coding_gene FALSE TRUE AT1G01840.1 unknown protein -0.615297792392908 -6.90561016912928 2.71545652130828e-05 0.398248853415072 7.7510935359558 6.45713335783447 -0.615297792392908 0.0611124201485323
AT2G20950_at 4.53329445282403 4.76627637318909 5.79117095991933 5.44151998395172 6.38446296908001 5.86586573827509 5.43405568320869 5.22659580400745 5.92819689779601 5.45961131760110 6.32701966065711 6.59286785620645 6.44793744150192 7.00202469400342 6.02569261627104 6.44016888619534 5.81594376350381 5.93540726299633 5.69787516235499 0.230179276903557 0.223744559614146 0.245266350835645 0.230548354960598 0.247083544357828 0.225077369408536 0.234738126882671 0.228296452236747 0.239619867217280 0.232224987885928 0.221778519410621 0.226311277842194 0.231929927834121 0.221778519410621 0.225047588476576 0.226284555952762 0.228341892476027 0.230560369082267 0.226582459455948 2 2 + 9011994 9012889 9012330.3 9010216 9013019 + gene protein_coding_gene FALSE TRUE AT2G20950.1|AT2G20950.2|AT2G20950.3|AT2G20950.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38550.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38550.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.75442715729106 6.90299662284925 2.72473558179284e-05 0.39958247306992 7.74851524434885 11.4397105281824 0.75442715729106 0.120955067620702
AT3G16250_at 9.2160932798044 9.3467758129661 7.8428696291574 7.56000586198716 8.76305247674616 8.56902972724552 9.98710386953134 9.7555338664869 9.99064939409451 9.89352864201573 10.1172074202131 10.3677596289775 9.70060688775757 9.88380616819962 10.6780547177699 10.1487559870247 9.06033721750397 10.0845441152007 9.80308707371642 0.128545260161127 0.122503567086395 0.131013554952556 0.135348464546077 0.126756666707924 0.123957588028078 0.124186509802093 0.125849000628419 0.131844769256277 0.128046041229649 0.121880128065414 0.125755395574719 0.124097785619961 0.126362326032128 0.130557881553533 0.121880128065414 0.134928463966601 0.125210004626745 0.128557733162718 3 3|0 -|/ 5507314 5508265 5507853.9 5506937 5508420 - gene protein_coding_gene FALSE TRUE AT3G16250.1 ferredoxin-related similar to ferredoxin-related [Arabidopsis thaliana] (TAIR:AT4G32590.1); similar to Ferredoxin [Medicago truncatula] (GB:ABE80924.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.641629151095553 -6.90292405595649 2.72499370635016e-05 0.399593077099187 7.7484436408666 18.8305025927105 -0.641629151095553 0.0751063877765397
AT1G72700_at 6.56748588428589 7.298444745837 8.88667028145642 8.53952419856545 7.35673716219369 6.66594053313796 5.71989967425784 4.98790130665486 5.33095556410473 4.8924700785647 5.59244198420639 6.00206366659733 5.86980732539288 5.05539884710917 5.42463671072563 5.00874276598825 4.9562894735411 5.07216554287633 4.52008494313849 0.24632965629667 0.247798780994199 0.263530955794783 0.264280407840886 0.251080774166513 0.24971818354147 0.24895408624462 0.242037617907962 0.26209471725228 0.248361101292227 0.246692409830043 0.242037617907962 0.248691388734871 0.251266123884964 0.2438483354717 0.242037617907962 0.246314080836066 0.248038198985283 0.245764770551655 1 1 + 27374578 27375102 27374799.545 27370572 27375395 + gene protein_coding_gene FALSE TRUE AT1G72700.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 5 (EC 3.6.3.1) (Aminophospholipid flippase 5) (ALA5) [Arabidopsis Thaliana] (GB:Q9SGG3); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G17500.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G13900.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G54280.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE81304.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to Putative phospholipid-transporting ATPase 7 (Aminophospholipid flippase 7) (GB:Q9LVK9); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 1.08848745101574 6.89420682064487 2.75619319097344e-05 0.404140607592435 7.7398360570174 12.1464238823773 1.08848745101574 0.223490758861785
AT2G22880_at 1.68577518146291 2.0115403023085 1.80126864859190 1.82633476327789 2.12999972026045 2.07156627992103 0.521075685083779 0.915324624695946 0.571935238036007 0.690634997340576 1.09620082246569 1.45223034007325 1.10719355672516 1.68257866522758 1.69254211514738 0.907360852517535 1.63828364906253 1.6570674331926 0.949347994836788 0.217793052255135 0.218389272817707 0.225680882961105 0.220804651876248 0.223958053534789 0.221656729623098 0.217793052255135 0.221638566919095 0.222269647313578 0.219261851598082 0.217793052255135 0.217793052255135 0.220580878103583 0.222008380256162 0.224580824566351 0.223714256306348 0.22584073910761 0.223507476980166 0.222635548557851 2 2 - 9748231 9748511 9748383.273 9748199 9748543 - gene protein_coding_gene FALSE TRUE AT2G22880.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT4G37710.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.670369753594356 6.88143682347683 2.80259195569397e-05 0.41091603254385 7.72720489617781 2.69110477871993 0.670369753594356 0.0891857852863434
AT3G03630_at 4.06038356973385 4.18434022563147 3.42949162770892 3.71771258417856 3.25710648135909 3.40930659252902 4.03920909652224 4.54383959939258 3.70476071649508 3.93298874261759 2.6542010227101 3.54635731178728 3.58935254977521 2.74436856722481 3.79490961226520 3.64222109236295 3.57737382159592 3.03218278805693 4.34169684174855 0.217912334578336 0.201716436759323 0.206583771841488 0.208146634539021 0.210043747549077 0.22111600926559 0.217095389578793 0.210156498157783 0.208493583737911 0.215158895871859 0.206125765390419 0.215410429014093 0.211424195821612 0.20497318357405 0.202724733981786 0.208658951608409 0.219559613284144 0.201716436759323 0.212993330244383 3 3|0 -|/ 878426 879191 878711 877935 880453 - gene protein_coding_gene FALSE TRUE AT3G03630.1 CS26 (cysteine synthase 26); cysteine synthase O-acetylserine (thiol) lyase Identical to Probable cysteine synthase, chloroplast precursor (EC 2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (CS26) [Arabidopsis Thaliana] (GB:O22682); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.3); similar to Os01g0814800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044611.1); similar to plastidic cysteine synthase 2 [Solanum tuberosum] (GB:BAB20863.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) -0.712033361303788 -6.88081332283648 2.80487875685349e-05 0.41122327454229 7.72658751037514 7.48805852846998 -0.712033361303788 0.106150860504987
AT4G22820_at 8.32503303586486 8.55562986204134 9.62533924782184 9.68760824711666 9.68414812962934 9.415260881583 9.32808763942488 9.12740468406482 8.2841258537135 8.70572257035024 8.89302555516379 8.19613407932539 9.2181694027847 8.83219171970879 7.91103708715131 9.21175839519523 9.38610957548255 9.08737457067202 8.05243094333828 0.123043748122679 0.124299005535783 0.118430154633965 0.116929065269685 0.117283925076891 0.119817516746653 0.116215956509725 0.116171927323923 0.125406613595287 0.123670344062433 0.118249113590705 0.119629123505562 0.119381984993299 0.123914967869446 0.125680226695936 0.116378309512278 0.118199442061215 0.119412332535958 0.126672263202856 4 4 - 11987961 11988369 11988134.818 11987716 11989017 - gene protein_coding_gene FALSE TRUE AT4G22820.1|AT4G22820.2 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 9 (AtSAP9) (SAP9) [Arabidopsis Thaliana] (GB:O49663); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT4G12040.2); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.631799456786765 6.87977914237104 2.80867621726485e-05 0.411751933451027 7.725563336016 17.8132647179364 0.631799456786765 0.0712738034137
AT4G36940_at 6.77629793823903 6.67788790262157 6.97525620663565 6.97905837919234 7.16141708449155 6.92272961130435 7.40084364026744 6.92874876878439 5.21828842509717 5.13951554438542 6.13537263669843 6.7519918118219 6.19956889779254 6.44157778036875 6.11520183337342 7.1556759479344 6.88582852578577 6.90275169383745 5.47814612512838 0.215635826003694 0.212079896781581 0.22571160277307 0.215347973932014 0.212079896781581 0.215349286112540 0.212156320218259 0.221175213951115 0.238142395726043 0.236207976485089 0.223029108717097 0.212079896781581 0.223746710350502 0.230741308802367 0.214075901164078 0.212084639045697 0.225816493926811 0.212079896781581 0.240622326017571 4 4 + 17418599 17419454 17419014.818 17416852 17420248 + gene protein_coding_gene FALSE TRUE AT4G36940.1 nicotinate phosphoribosyltransferase similar to nicotinate phosphoribosyltransferase family protein / NAPRTase family protein [Arabidopsis thaliana] (TAIR:AT2G23420.1); similar to B0222C05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66393.1); similar to nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] (GB:AAP69614.1); similar to Nicotinate phosphoribosyltransferase related [Medicago truncatula] (GB:ABE93547.1); contains InterPro domain Nicotinate phosphoribosyltransferase related; (InterPro:IPR006405); contains InterPro domain Nicotinate phosphoribosyltransferase and related; (InterPro:IPR007229) 0.679258433671228 6.87780437610187 2.81594279974727e-05 0.412789055014952 7.72360720362731 12.9038530276863 0.679258433671228 0.0931195341709712
AT3G25010_at 8.76303635124285 8.64314675436256 10.0809096874390 10.1915601743060 8.35915627726358 7.27494589785778 3.62597606785213 3.31798191559036 5.23929401446368 4.22593861946433 3.60709450749900 3.58046300036818 3.80695053303768 3.95406975743596 3.52919529433967 4.49936757224838 4.05914874066545 3.87874154946591 4.84125201683019 0.322652846159100 0.320635907736916 0.328165136821525 0.327072375584302 0.316884585128051 0.326399262609978 0.302817013279918 0.304244596598795 0.322683610358130 0.302810082718926 0.313015873068738 0.312977357891370 0.312489080735501 0.307528767905532 0.310825121708717 0.303924798335134 0.328489272355745 0.302810082718926 0.309440888700397 3 3 - 9110120 9110656 9110293.091 9110110 9112755 - gene protein_coding_gene FALSE TRUE AT3G25010.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G24982.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.992329194708863 6.87316496363265 2.83309403367326e-05 0.415274923455826 7.71900912631746 11.8486926838902 0.992329194708863 0.19708408400609
AT2G27170_at 5.77488447092114 5.51232993315426 6.03628724488771 5.86993599713808 6.26775177222756 6.33016976834179 5.59137518583969 5.46887498753551 4.44915150400561 3.98634301645274 4.49817062852264 5.11083826656747 5.26493104553928 4.89031418128615 4.31633301056765 4.93481666433619 4.49903373455857 4.72285816457785 3.8749365907569 0.179407239706564 0.175149878699608 0.178637215602056 0.176046818017877 0.175512595836677 0.171844997195226 0.173948239096941 0.171376714004248 0.169765207973450 0.175334752888038 0.175200724615873 0.168799102569360 0.174326727661171 0.173326414578023 0.179964225801644 0.168799102569360 0.184396396254233 0.174080660100078 0.188487226898114 2 2|0 -|/ 11618397 11619148 11618768.4 11616200 11624512 - gene protein_coding_gene FALSE TRUE AT2G27170.1|AT2G27170.2 TTN7 (TITAN7); ATP binding|TTN7 (TITAN7) cohesin similar to SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Arabidopsis thaliana] (TAIR:AT5G62410.1); similar to putative SMC3 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08001.1); similar to SMC3 protein [Oryza sativa] (GB:CAD59411.1); similar to putative SMC3 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08002.1); contains InterPro domain SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain SMCs flexible hinge; (InterPro:IPR010935) 0.607677488104431 6.86399915953845 2.86730911992143e-05 0.420261497706884 7.70991490764063 10.2980206695388 0.607677488104431 0.0588156585488011
AT1G08050_at 5.34831426167247 5.50653274209841 5.94594949526097 5.95053529681231 3.86322940646766 3.7706094206364 2.57568419730083 2.29776889067828 2.80736196623621 2.53171829058359 2.75068485513252 2.38718724751974 2.83840196854591 2.46389157820947 2.76475890174009 3.23808471470003 3.38739042918987 3.16055820324721 2.50286925707616 0.232209714965402 0.232534734695242 0.241364328578009 0.225788804846310 0.223177303848712 0.226617585505838 0.222125777533353 0.221743268227676 0.227977318836517 0.218842638096803 0.218842638096803 0.225267536830337 0.224350767235815 0.228666461063323 0.222783378258588 0.221105098292973 0.224852849045600 0.220261195110409 0.220691355901066 1 1 - 2499089 2499625 2499245.818 2498833 2501424 - gene protein_coding_gene FALSE TRUE AT1G08050.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60710.1); similar to Os02g0806700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048450.1); similar to Hypothetical protein protein containing a von Willebrand factor type A domain [Oryza sativa] (GB:AAK98695.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.605196223921898 6.85836031702432 2.88857852015919e-05 0.423350067914531 7.7043134503534 7.15125441815804 0.605196223921898 0.057622135015061
AT3G63080_at 8.84270429285387 8.79869218652826 9.00042897509823 9.21119519455726 9.31494488058723 8.76192670875556 7.74607310706649 7.89015538351977 8.75841292364601 7.32437626920056 8.66701934918636 8.39221193394535 8.33369758499646 8.89086116277834 8.21947875901997 8.62965809989781 8.02602846792306 8.7172473360572 7.37962447847376 0.143348691471518 0.141128009057012 0.146429789350008 0.142541285836722 0.141128009057012 0.152234813115851 0.146318502458527 0.150317255074597 0.155469069937898 0.145881936314359 0.149628430561098 0.143966515152171 0.142603154412496 0.151468359992156 0.144315752088561 0.141128009057012 0.152092988541704 0.145841284096918 0.151874172627459 3 3|0 +|/ 23321169 23321908 23321611.222 23320712 23322361 + gene protein_coding_gene FALSE TRUE AT3G63080.1 ATGPX5 (GLUTATHIONE PEROXIDASE 5); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable glutathione peroxidase 5 (EC 1.11.1.9) (GPX5) [Arabidopsis Thaliana] (GB:Q9LYB4); similar to ATGPX4 (GLUTATHIONE PEROXIDASE 4), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT2G48150.1); similar to phospholipid hydroperoxide glutathione peroxidase-like protein [Hordeum vulgare] (GB:BAC55016.1); similar to Os03g0358100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050145.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Src homology-3; (InterPro:IPR001452); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.708219238438134 6.85561261650007 2.89900399165098e-05 0.424849034976451 7.70158212868788 16.848430038037 0.708219238438134 0.105683601268779
AT4G26130_at 8.9489307504339 9.17183587071015 9.32491672587452 9.41982776200473 9.47153190073885 9.41969539070018 8.59180080957596 8.85169848013829 7.48545097187051 7.24054969195846 7.87249002606742 7.80266034168171 8.53690986070478 8.31263346774114 7.72324557706536 7.66055929057169 8.28403502540572 8.13446189419463 7.27617528773153 0.178732426247655 0.177104750301139 0.180117320402799 0.176474399095913 0.177974476857186 0.178993457623916 0.175459714902660 0.173658631877841 0.176270051816882 0.177094939101154 0.173291505780554 0.174688887562253 0.172511717297924 0.176236837000258 0.174564605893198 0.172811472975202 0.180170351570777 0.175390809876574 0.176579411202812 4 4 - 13240583 13240953 13240802.273 13240015 13241292 - gene protein_coding_gene FALSE TRUE AT4G26130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56980.1); similar to cDNA-5-encoded protein (GB:AAA50235.1) 0.612371126011943 6.85273640219781 2.90996034780267e-05 0.426425589367003 7.6987217683158 16.8374962542467 0.612371126011943 0.0621381008603533
AT3G26932_at 2.52768653153284 2.0630232418626 1.79677592247352 1.89000617722793 1.97285137244006 1.99487290665578 3.5256260803351 2.84575321824614 3.03036240397685 3.4654241652621 2.82507889186471 3.42047870442044 2.40731557637319 2.80250467779257 3.3515325571734 2.58089539533416 2.26614397009796 2.34645582245101 4.15954670497839 0.225098734534747 0.218577067007623 0.224676250751071 0.231435645251203 0.210255325232227 0.220668859283463 0.21778898619401 0.212377798245601 0.228231912386453 0.232551417812742 0.211175649118605 0.214436311193122 0.220703852207699 0.212171782885106 0.215185977042534 0.214047909058306 0.226623233877806 0.222936076790386 0.236186059561826 3 3 - 9931734 9932232 9931933 9931507 9933357 - gene protein_coding_gene FALSE TRUE AT3G26932.1|AT3G26932.2 DRB3 (DSRNA-BINDING PROTEIN 3); double-stranded RNA binding similar to DRB5 (DSRNA-BINDING PROTEIN 5), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT5G41070.1); similar to Double-stranded RNA binding [Medicago truncatula] (GB:ABE80978.1); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.814311365964432 -6.84976652992376 2.92132011978061e-05 0.428061037151453 7.69576688001934 5.47798866010218 -0.814311365964432 0.143470134831808
AT1G13960_at 6.70408940788265 6.87252059454117 7.08686095895856 7.0891380468022 7.28836623770489 7.4736603991065 5.94539475235638 6.16756090239806 5.81815112302683 5.78375168690067 6.08986143905713 5.73803334902098 6.03262156789066 6.36061409121888 6.27566150744565 6.15236033010153 6.609297003009 6.23195197030628 5.76556076008627 0.261444239600609 0.249401595405058 0.249989450887529 0.253096370282071 0.257227386110915 0.254946041312701 0.257594837595731 0.250171155817061 0.257431645376904 0.249991966679435 0.252999131264419 0.247040638789362 0.250687611952849 0.247650916527304 0.253199191733946 0.249634692033916 0.250797875052224 0.264308495616273 0.250104654242346 1 1|0 +|/ 4778246 4778999 4778712.4 4776460 4779397 + gene protein_coding_gene FALSE TRUE AT1G13960.1|AT1G13960.2 WRKY4 (WRKY DNA-binding protein 4); transcription factor Encodes WRKY DNA-binding protein 4 (WRKY4). Identical to Probable WRKY transcription factor 4 (WRKY DNA-binding protein 4) (WRKY4) [Arabidopsis Thaliana] (GB:Q9XI90;GB:Q93WN8;GB:Q9LMG1); similar to WRKY3 (WRKY DNA-binding protein 3), transcription factor [Arabidopsis thaliana] (TAIR:AT2G03340.1); similar to DNA binding protein WRKY2 [Vitis vinifera] (GB:AAT46067.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|similar to WRKY3 (WRKY DNA-binding protein 3), transcription factor [Arabidopsis thaliana] (TAIR:AT2G03340.1); similar to DNA binding protein WRKY2 [Vitis vinifera] (GB:AAT46067.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.604630315133407 6.84615904102645 2.9351828259336e-05 0.430062987655791 7.69217569687493 12.8161762527659 0.604630315133407 0.0579322229659068
AT1G76180_at 11.4262974660453 11.4595329473057 11.5394571880783 11.5981995140688 12.1440799689569 11.8888055308779 11.5202094613635 11.5352342402964 11.0357180306440 11.2756113481537 12.2261417857707 11.9767403229671 12.0655773902011 12.2693355856834 11.6580463386920 12.1194574150773 11.8706126368481 11.9293745031529 11.1358175759327 0.0750564770758408 0.0730143600350076 0.0780734246281139 0.0758641992092956 0.0745919058633656 0.0777308580384088 0.0732679685602956 0.0752939534714295 0.0783499438166774 0.0755358579087157 0.0729516781734355 0.0729516781734355 0.0763206118204532 0.0753183623276085 0.0748733870638605 0.0729516781734355 0.0779944527740131 0.0729516781734355 0.0739290589303286 1 1|0 -|/ 28591927 28592473 28592188.2 28591667 28592771 - gene protein_coding_gene FALSE TRUE AT1G76180.1 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated. Identical to Dehydrin ERD14 (ERD14) [Arabidopsis Thaliana] (GB:P42763); similar to ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) [Arabidopsis thaliana] (TAIR:AT1G20450.1); similar to pollen coat protein [Brassica oleracea] (GB:CAA64428.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.586339392065855 6.84565926236414 2.93710891483807e-05 0.430315827112925 7.6916780131914 23.2207069057287 0.586339392065855 0.0457683100072384
AT4G27840_at 4.5534015362544 5.1593111704417 4.34255633396929 4.57032989559974 4.30897938902226 3.9044044112303 5.9530583452012 6.08082714647353 4.865267409762 5.04497953525305 4.79757134370239 4.73191651178407 4.25502949284994 4.30624003910906 4.60005141500702 4.33240281211976 4.20845000973428 4.49518222718870 4.72887317043869 0.211852642143407 0.205679570924913 0.218845993653618 0.214171159297107 0.213915857965962 0.225834776878584 0.210473294183245 0.20914484467678 0.218341635331967 0.213422555136158 0.213122288220856 0.206938279094519 0.210387455921510 0.219749802979177 0.206672430930166 0.208624671061858 0.212127290056131 0.218079583715433 0.206630308097897 4 4 - 13865331 13865843 13865687.545 13865051 13866293 - gene protein_coding_gene FALSE TRUE AT4G27840.1 similar to vesicle-associated membrane protein-related [Arabidopsis thaliana] (TAIR:AT5G52990.1); similar to Os08g0558600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062495.1); similar to Os08g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060818.1); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) -0.784466632925829 -6.8380917496499 2.96643957223356e-05 0.434583397332217 7.68413734194841 9.53188962181813 -0.784466632925829 0.133937273324262
AT3G05290_at 5.79505483068007 6.39731303734079 6.69983782148911 7.00591010345295 7.40011913195167 7.34865011291038 4.99905516093642 5.56765997594108 5.82687061010906 5.79255200415554 6.00350747587349 6.05049404166273 6.03844552780682 6.18620359986884 5.48381255270285 6.37246713877227 5.85770987006229 6.26728063425591 5.69694704816593 0.257190583380872 0.248016916059528 0.25979226128385 0.259479595478467 0.250359003849651 0.264775509038716 0.260311730269741 0.257092321738831 0.257682658267303 0.253005075216395 0.250094230523429 0.249084804527713 0.248647781728323 0.259691362016370 0.249810303441328 0.248016916059528 0.265242039431436 0.251635876391058 0.251160972213418 3 3 - 1506165 1506871 1506478.182 1505896 1507706 - gene protein_coding_gene FALSE TRUE AT3G05290.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G27520.1); similar to Os05g0392700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055452.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL50155.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.842112712770958 6.83512669499849 2.97801728665362e-05 0.436249752321889 7.68118030655198 12.3040066848057 0.842112712770958 0.153068360066376
AT3G12740_at 9.97545546921392 10.0795660490859 10.7619796899906 10.7193785334773 10.4572465564472 10.2745001578251 8.88678991333043 8.87527448603823 9.65219591266092 9.53012415048126 9.70071366746497 9.58582859557144 9.53668647463453 9.61943262700886 9.16895792269195 9.95994954161545 9.3604905662805 9.55851810756352 9.34934169752697 0.110638862765860 0.111413335024606 0.113964249339144 0.112163109049965 0.11180655318988 0.118294542364001 0.108684693891066 0.109446642704375 0.110131523695502 0.111549958454577 0.113846377706432 0.107880689642644 0.111646769109611 0.116268561257438 0.111046430050346 0.110254578049319 0.128507122774213 0.110115825800006 0.109198671152911 3 3 + 4050976 4051543 4051257.455 4049522 4051782 + gene protein_coding_gene FALSE TRUE AT3G12740.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G54320.1); similar to Os06g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058302.1); similar to Os02g0173800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046043.1); similar to hypothetical protein [Lotus japonicus] (GB:BAD32828.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) 0.574886511324396 6.83491999838080 2.97882618535592e-05 0.436338459630935 7.68097411650858 19.5397119109646 0.574886511324396 0.0371897341942663
AT3G55580_at 3.18876793147229 2.86587014897150 2.07980137424833 2.56447563704693 1.79500813715147 1.83093417857528 2.83383039000086 3.41611070500471 2.56200655229853 2.69249743617409 1.86820351130021 2.10736257552089 2.34603701254964 2.30074309766357 1.77446877298874 1.69721561165720 2.31287761460245 2.403296788586 2.88247416841403 0.233995541629732 0.230812501269153 0.227461417537000 0.217400839953323 0.219570140376391 0.224734321064852 0.229200572061918 0.216126348959334 0.217974829582994 0.216126348959334 0.218344396988105 0.216298502323324 0.216126348959334 0.227830934521159 0.231984404447652 0.221000217199551 0.221289883811621 0.218325351937808 0.230460810435649 3 3|0 +|/ 20625173 20626671 20626030.375 20623679 20626899 + gene protein_coding_gene FALSE TRUE AT3G55580.1 regulator of chromosome condensation (RCC1) family protein similar to regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related [Arabidopsis thaliana] (TAIR:AT3G53830.1); similar to Os01g0846800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044792.1); similar to UVB-resistance protein UVR8-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82660.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) -0.8098201956469 -6.832784983473 2.98719528647542e-05 0.437534493610054 7.67884393399987 4.97865065051099 -0.8098201956469 0.142653438896652
AT4G23600_at 9.98661660125055 10.0932078920764 9.2759789892134 9.4182629449393 9.8553496984791 9.71435199926087 11.2767011998039 11.1914240945213 6.44200916031107 10.1390149707039 9.72612210676005 8.7714265872066 9.79626327022366 9.74508468742571 9.78545528780967 10.2061533325078 10.2169192391288 10.4498383986881 6.23569028294926 0.108655698329754 0.106134571851925 0.111622881831228 0.115592240497061 0.106785616216305 0.107908804807928 0.109706859299845 0.106134571851925 0.145021253344807 0.107720327345492 0.106734846060027 0.110697287627853 0.108264451133155 0.112236189634353 0.106335926823680 0.106134571851925 0.110940268124387 0.108625009474506 0.131945680445975 4 4|0 +|/ 12311861 12312835 12312212.125 12310629 12313222 + gene protein_coding_gene FALSE TRUE AT4G23600.1|AT4G23600.2|AT4G23600.3 CORI3 (CORONATINE INDUCED 1, JASMONIC ACID RESPONSIVE 2); transaminase Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. similar to aminotransferase class I and II family protein [Arabidopsis thaliana] (TAIR:AT4G23590.1); similar to cystine lyase BOCL-3 [Brassica oleracea] (GB:AAO27362.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.580292426728754 6.83265587095038 2.98770220641748e-05 0.437578865151905 7.6787150903134 18.8228513449632 0.580292426728754 0.041948880003491
AT3G24150_at 4.96921485823636 5.19556528444977 3.96984531633815 3.95509596429631 5.22706537187752 5.03592921248058 6.46870886426106 6.02896106469434 4.83208862013143 5.45815314972879 5.27140902152782 5.18993779983726 5.26319657921978 4.98870153630634 4.91904226294322 5.04864062094639 4.57399906908176 5.10268230276113 5.51775561200553 0.219112334327886 0.219264257455064 0.218757167739556 0.235274417219094 0.220856933689985 0.219990087025234 0.227714881308719 0.222944695471322 0.255138227558707 0.220751587163060 0.226955522991757 0.228547550395759 0.218757167739556 0.223648316469393 0.223103134957075 0.220218079192263 0.231132880497781 0.232744699598581 0.221058778662702 3 3 - 8724476 8724855 8724665.545 8724166 8725919 - gene protein_coding_gene FALSE TRUE AT3G24150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32295.1); contains domain no description (G3D.1.10.246.20); contains domain Kix domain of CBP (creb binding protein) (SSF47040) -0.671629931603097 -6.83217972510554 2.98957244219295e-05 0.437822884159158 7.67823991282317 10.2633150469292 -0.671629931603097 0.0917945651458674
AT3G18160_at 4.71404986482734 4.72874009596745 4.69265676341426 4.5837049817502 5.13873259291576 5.30764811513348 4.12614113571795 4.34215442633313 3.61124663774498 3.96765300229006 4.42548051944367 4.62903079691667 4.64369021479044 4.93465210764084 4.57425026956510 4.97311361326135 4.67888371730564 3.85151495138612 3.99320367392875 0.211833425438241 0.22004510337385 0.213473695035404 0.21329026017221 0.214281835311877 0.208503454432717 0.212397270322987 0.217842729737378 0.226401997194112 0.217276942051366 0.218682429301664 0.212799120603693 0.210716421006687 0.210716293913333 0.208470412953356 0.208470412953356 0.219407809838489 0.212716974411347 0.225131031839844 3 0|3 /|+ 6222093 6222862 6222543.1 6220632 6223079 + gene protein_coding_gene FALSE TRUE AT3G18160.1|AT3G18160.2 peroxin-3 family protein similar to peroxin-3 family protein [Arabidopsis thaliana] (TAIR:AT1G48635.1); similar to Os09g0314300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062839.1); similar to PREDICTED: peroxisomal biogenesis factor 3 [Macaca mulatta] (GB:XP_001091411.1); similar to peroxisomal biogenesis factor 3 [Danio rerio] (GB:NP_956522.1); contains InterPro domain Peroxin-3; (InterPro:IPR006966)|similar to peroxin-3 family protein [Arabidopsis thaliana] (TAIR:AT1G48635.1); similar to PREDICTED: similar to peroxisomal biogenesis factor 3 [Strongylocentrotus purpuratus] (GB:XP_780894.2); similar to Os09g0314300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062839.1); similar to PREDICTED: similar to peroxisomal biogenesis factor 3 [Strongylocentrotus purpuratus] (GB:XP_001176855.1); contains InterPro domain Peroxin-3; (InterPro:IPR006966) 0.592186742529714 6.82571884056889 3.01507446145323e-05 0.441527504135211 7.67178857922643 8.92732589456244 0.592186742529714 0.0511260091422618
AT3G59820_at 4.5103943581909 4.45060214155774 4.28399448239714 3.9550741965297 4.03730404342694 4.09642540426622 2.09195102608078 2.19363028421054 2.00048317137718 2.17578636708883 2.39699110591201 2.15053337417756 2.14185377807981 2.59871064529365 2.54248852633454 2.0753996193445 2.66685413153839 2.57717548552208 1.70087351286953 0.225498138218490 0.230205276334974 0.219188760097558 0.221882958385118 0.224987289184979 0.231229340498623 0.219064058686832 0.215477425951184 0.226829184113929 0.217175756058008 0.214211980684472 0.21775543918328 0.221844953316248 0.217566814033871 0.214211980684472 0.216136763163552 0.214211980684472 0.215926369419373 0.228185600505318 3 3|0 -|/ 22109457 22110267 22109713.444 22109005 22112736 - gene protein_coding_gene FALSE TRUE AT3G59820.1|AT3G59820.2 calcium-binding mitochondrial protein-related|calcium ion binding similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G65540.1); similar to Os02g0608400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047387.1); similar to H0306B06.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67493.1); similar to Ca2+ binding protein cbp1 [Triticum aestivum] (GB:AAW66005.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain LETM1-like; (InterPro:IPR011685); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.608129114320908 6.82094573612156 3.03406445909585e-05 0.444278058745405 7.6670182350173 5.87882125060941 0.608129114320908 0.0613301603507866
AT4G34990_at 3.18847381581529 4.06170409895871 5.08037951902968 5.46461832427037 5.81667982073627 5.49675343965133 3.82146418058682 4.34681330912242 2.55395513508356 3.83731397557021 3.69887825036186 2.80398682577507 4.1076193403637 3.36963697057040 3.17376739368043 4.31337356323178 4.4541421398708 3.42754935433505 3.55091491041427 0.252834558660172 0.247403480975452 0.248651919918992 0.254368291959258 0.260806581555562 0.292512977153274 0.242487101227195 0.248766984515009 0.250723118885573 0.248068517320791 0.248412607946296 0.244087082291396 0.248828837556053 0.258737920651682 0.245964881065299 0.249990384211634 0.268813143438897 0.246469492594514 0.244861554719354 4 4|0 -|/ 16661410 16662045 16661720.3 16661334 16662372 - gene protein_coding_gene FALSE TRUE AT4G34990.1 AtMYB32 (myb domain protein 32); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB7 (myb domain protein 7), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16720.1); similar to MYB transcription factor MYB54 [Glycine max] (GB:ABH02822.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.982275907109364 6.81880962002312 3.04260461886588e-05 0.445498168294343 7.66488217116875 8.15095109858619 0.982275907109364 0.196439164437188
AT2G42690_at 10.7313658612118 10.7432804003325 10.4426768718175 10.4728561183624 10.5101864888986 10.3163639573941 11.1224057313966 11.3233583356714 11.1509382022343 11.4100525641627 10.7429015037922 10.6931518895561 10.5299115031112 10.6210990292015 10.4381329794723 10.7144582658810 10.4946674719474 10.8678180173405 11.2463583038244 0.101407151185804 0.0962191324665873 0.103171929235144 0.099300244028469 0.0954148296231276 0.099281840076438 0.0993596820292022 0.100085651218841 0.107591935847796 0.097525601499271 0.102712403023901 0.0956467335700295 0.0966061521902133 0.099085107845739 0.101261490951215 0.0991585454903258 0.102080033244355 0.102020759884203 0.0977510983150308 2 2|0 -|/ 17783461 17784052 17783862.4 17783318 17784794 - gene protein_coding_gene FALSE TRUE AT2G42690.1 lipase, putative similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G18550.1); similar to lipase [Dianthus caryophyllus] (GB:AAD01804.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.587965248618814 -6.81846707794416 3.04397649481145e-05 0.445668598605345 7.66453956938964 21.6612536902748 -0.587965248618814 0.0486409426401204
AT1G54510_at 3.48618886195418 3.77379289611540 3.69436372214675 3.99416487000104 4.4354173145434 4.2166754910098 3.15278972690942 2.91103417313769 2.74696055596386 3.12431194762084 3.90974338956637 3.63163260755049 3.32577230937022 3.98050991247271 3.55643745196783 3.67621011585377 3.81481536138046 3.36291240249786 3.34946701169278 0.190865101734017 0.187189364930161 0.191684246079218 0.180349784362945 0.198458801350839 0.206256008872365 0.191808016779762 0.186247525275383 0.197560180672235 0.185947047699818 0.183164224888938 0.188862689170553 0.180349784362945 0.180417389980866 0.184965753539503 0.181501832536839 0.187569957887574 0.186152999096979 0.188231051089026 1 1 - 20362272 20362750 20362546.636 20362003 20366212 - gene protein_coding_gene FALSE TRUE AT1G54510.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G28290.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G04810.2); similar to Protein kinase [Medicago truncatula] (GB:ABE80294.1); similar to LSTK-1-like kinase [Lycopersicon esculentum] (GB:AAL04423.1); similar to NIMA-related protein kinase [Populus tremula x Populus alba] (GB:AAL79042.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.668939145151356 6.81441228342991 3.06026640892862e-05 0.448023002267151 7.66048263810193 7.07347039810635 0.668939145151356 0.0913903206408081
AT1G09200_at 7.47878844930394 7.90278689692875 7.70155558513844 7.70448984069489 5.77898973827627 5.68725829775474 7.90968855613635 8.22028856327277 8.48247571155193 8.35183555502625 7.89234204711227 8.82237912116103 7.56053063916362 7.91890264221084 8.97329784995554 7.87493305781047 7.06643491079892 7.61996055930591 7.60840010019159 0.191048234764764 0.175045984488918 0.187325791123912 0.191237037211824 0.177955173798299 0.204916468400130 0.178437198430465 0.181623908905304 0.194329837051208 0.175045984488918 0.177694847594335 0.182326753473691 0.181311200235331 0.189485144340299 0.184569219892314 0.179350360135472 0.182260634530524 0.175045984488918 0.180122770136953 1 1 - 2971742 2972096 2971933.727 2971595 2972201 - gene protein_coding_gene FALSE TRUE AT1G09200.1 histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10400.1); similar to Histone H3.2 (GB:P68427); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.670643801547231 -6.80933311314219 3.08080377725792e-05 0.450998864952786 7.65539706876734 15.3548147704531 -0.670643801547231 0.092332458392523
AT4G30060_at 4.43798147201358 4.67045356054195 3.62622592556116 3.40117724037636 3.17396331963215 2.97353681686024 4.37678775271548 4.43843138856802 3.90202340783753 2.91380108247208 3.24203810379961 3.83978908281198 2.95825476635823 3.27760294211855 3.66068239902434 3.02181684837274 2.71476354766917 3.40795061472962 3.11632638961029 0.203606243134384 0.201304356647788 0.20528483483562 0.210585868536611 0.204210504866113 0.199866291063405 0.211232328003246 0.205335748489976 0.203747776461011 0.211132883268524 0.199866291063405 0.213112550577983 0.199866291063405 0.214174329486808 0.208192366734861 0.205318877248106 0.210766586676189 0.214248402642743 0.199866291063405 4 0|4 /|- 14689799 14690949 14690377 14689135 14692486 - gene protein_coding_gene FALSE TRUE AT4G30060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19160.1); similar to Protein of unknown function DUF266, plant [Medicago truncatula] (GB:ABD28621.1); contains InterPro domain Protein of unknown function DUF266, plant; (InterPro:IPR004949) -0.616271194857524 -6.80444790061175 3.10069645141694e-05 0.453879946558412 7.65050179341392 7.17535930857553 -0.616271194857524 0.0667239413530748
AT4G26520_at 6.82291203650216 6.48412303809956 5.92937229686999 5.80934708487601 6.57327866457205 5.9180114589634 8.04273812358906 8.17479482178281 6.83894374674941 7.69081801978808 6.97128878691364 7.22380095364108 7.7837452949513 7.65855188391137 6.73517894873606 7.52274266404163 7.54175511310092 6.70855584936713 7.940598458362 0.224834602427161 0.217567669617640 0.225695682884215 0.217863062254171 0.22106832276791 0.234046129286598 0.220831652007129 0.227010343913166 0.238881933909899 0.219828696689447 0.219312154070863 0.217829259022557 0.218030795603135 0.223610952154588 0.22331282154856 0.221545230969155 0.231731698597758 0.227080783390144 0.221770231516661 4 4 + 13389417 13390154 13389895.818 13388393 13390381 + gene protein_coding_gene FALSE TRUE AT4G26520.1 fructose-bisphosphate aldolase, cytoplasmic Identical to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) [Arabidopsis Thaliana] (GB:P22197;GB:O65582;GB:Q53YH0); similar to fructose-bisphosphate aldolase [Arabidopsis thaliana] (TAIR:AT4G26530.2); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.77277863340332 -6.80200446709209 3.11069781846169e-05 0.455312839688237 7.6480518883491 14.0984834465566 -0.77277863340332 0.131339040940085
AT1G58110_at 6.17467350266764 6.3809771698319 6.04181082079931 6.19985541641173 5.54625854010909 5.97733651424577 3.80870011616065 4.19892292349674 5.30729771999027 4.59779857641965 5.15236984135048 5.4416412758101 5.11280002043437 5.71613979798177 5.77391672733465 5.9007313197752 6.09584479209679 4.7268531893119 4.67993652202418 0.242139602691574 0.225294218401821 0.230506288774554 0.237214734222608 0.231801795073018 0.232143123656534 0.233279597412087 0.239851475721336 0.233821749735262 0.227524040500515 0.225294218401821 0.227085765553175 0.235955437390348 0.232277724953348 0.233485801564157 0.229164540878652 0.236041386819886 0.229451034032069 0.231925351287854 1 1 - 21519505 21520346 21519807 21519139 21521824 - gene protein_coding_gene FALSE TRUE AT1G58110.1|AT1G58110.2 bZIP family transcription factor|DNA binding / transcription factor similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G35490.1); similar to Eukaryotic transcription factor, DNA-binding [Medicago truncatula] (GB:ABE89685.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.714428204609725 6.8019651938373 3.11085885255785e-05 0.455312839688237 7.64801250324261 10.7169242387937 0.714428204609725 0.110218480933015
AT3G48640_at 4.37042725374742 4.6324179762757 7.62152550371043 7.27860410336332 3.82302052720262 2.83154622558752 1.6471804766796 1.54770054592786 3.26586425663409 2.22626248015523 1.95808636255542 1.78117535526703 1.91608076766389 2.03367123814984 1.74042214597968 2.19084786082965 2.33878046129931 2.30891163071055 1.92279617771973 0.247565161328413 0.233395205444503 0.255309757558074 0.257356791283272 0.241672726735325 0.230063896704826 0.227286083613391 0.22344221207167 0.22344221207167 0.227903503088575 0.230282834855831 0.229002912547801 0.229859783005638 0.233758364974230 0.229145607970851 0.225198897200077 0.232815700375349 0.225872551400689 0.228304781021275 3 3 - 18032694 18033204 18032929.182 18032635 18033309 - gene protein_coding_gene FALSE TRUE AT3G48640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66670.2) 0.950549266556117 6.79874538018978 3.12409168892462e-05 0.457210818674117 7.64478267604902 6.47162180121678 0.950549266556117 0.187917905032850
AT1G64770_at 9.47725098380558 9.55655890307792 9.44780434041023 9.4411622860852 9.34681105838737 9.36714089736646 10.9765996617870 10.9048201750328 10.3855327551504 10.4901224094320 10.0256515203256 9.94246012651732 10.1252232484727 10.2326637606990 10.0928221042213 10.5543438089657 9.92409967319363 10.0166151987951 10.3206850311398 0.111134731686799 0.107657040839029 0.11551599140884 0.103318766390083 0.114078350501087 0.118979164960209 0.112084839054151 0.111801643989199 0.118358349649609 0.106135294947596 0.108644275638440 0.106243423529283 0.107739375995896 0.109411197145528 0.106312333283317 0.103318766390083 0.111904370831308 0.114618796929309 0.107762239131561 1 1 + 24061747 24063016 24062293.909 24061102 24063224 + gene protein_coding_gene FALSE TRUE AT1G64770.1|AT1G64770.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55370.2); similar to Os03g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049021.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06836.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013) -0.55631146022772 -6.79789873079757 3.12758127927910e-05 0.457690244409703 7.64393311683846 20.0712760359388 -0.55631146022772 0.018877606759195
AT2G25090_at 3.21393983869183 3.20451891574279 3.45740821360466 3.39878413683386 4.60578414121460 4.89540300494864 1.97014695127546 2.20125580799587 2.76497420519976 2.80103573470770 2.54302198305966 2.01834766689616 2.63460722037548 2.35274157244251 2.16122600524768 2.23303108944154 2.32276706831862 2.97223346168444 2.30044441355206 0.207605354656358 0.222913721629268 0.216039498977525 0.214531395603599 0.213524310598961 0.221272897594217 0.203873571809331 0.204811623225226 0.214240120157318 0.203556298203652 0.208970783017288 0.213961170135833 0.206235385236220 0.214856435689924 0.20648156275105 0.216761107290573 0.204148480408058 0.214181259902292 0.204897319155079 2 2 - 10677722 10678161 10677923.455 10677546 10679732 - gene protein_coding_gene FALSE TRUE AT2G25090.1 CIPK16 (CIPK16); kinase Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.18), which has also been reported as a member of the CBL-interacting protein kinases (CIPK16). similar to CIPK5 (CBL-INTERACTING PROTEIN KINASE 5), kinase [Arabidopsis thaliana] (TAIR:AT5G10930.1); similar to CBL-interacting protein kinase 6 [Populus trichocarpa] (GB:ABJ91234.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.612237526502017 6.79578188570557 3.13632448007453e-05 0.458938361169306 7.6418084920251 5.88185435608168 0.612237526502017 0.0649395381777115
AT3G22230_at 9.29923150092748 9.55516498905602 8.67593551337753 8.69838588121654 9.22614829765683 8.79637622339101 9.69307001252703 9.45023675179671 9.0544163105855 8.8558524588738 8.43905691375683 8.86143429169615 8.20071994788156 8.10133023425428 8.6780169943419 7.98939312679305 7.68450172490407 7.9015975281627 8.90743594428753 0.189722875593020 0.191317645042544 0.181478723074457 0.181641145246009 0.184587251614395 0.183415227638018 0.191691767322012 0.185915418895564 0.204746803992333 0.183527194411509 0.178719904179276 0.180890564673484 0.192868279706015 0.188145842222753 0.178719904179276 0.182066185416469 0.193291309146318 0.18987063264514 0.181322498085294 3 3 - 7844147 7844508 7844366.455 7843974 7844604 - gene protein_coding_gene FALSE TRUE AT3G22230.1 60S ribosomal protein L27 (RPL27B) Identical to 60S ribosomal protein L27-2 (RPL27B) [Arabidopsis Thaliana] (GB:Q8LCL3;GB:Q9LIE0); similar to 60S ribosomal protein L27 (RPL27C) [Arabidopsis thaliana] (TAIR:AT4G15000.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) -0.678721447012396 -6.79558560261184 3.13713651512153e-05 0.459025814892582 7.64161145104983 17.7599392711467 -0.678721447012396 0.0963027043677511
AT1G62880_at 3.44297566663674 3.86222122230004 3.70374739510100 4.16819199175926 5.00105462196341 4.7951853060204 3.19846453854093 3.40433625752844 2.4270289358620 2.53148694967817 2.72811470045647 3.02305851895691 3.24600040222544 2.7540338808943 2.69231417335084 3.33985945152433 2.97942071331061 3.02061768948491 2.34995798674337 0.217523180117076 0.213262234288279 0.232394868642833 0.227269672744999 0.222084325789176 0.226183044180305 0.215405581180824 0.216662783056967 0.228885275672464 0.215959507350099 0.213992886295855 0.216404928592302 0.221293168417896 0.221832586822738 0.232360520229682 0.21626454573964 0.221223830480406 0.222903909669368 0.219895799769121 1 1|0 +|/ 23295795 23296808 23296420.778 23295594 23297217 + gene protein_coding_gene FALSE TRUE AT1G62880.1 cornichon family protein similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to Cornichon [Medicago truncatula] (GB:ABE87428.1); contains InterPro domain Cornichon; (InterPro:IPR003377) 0.738407445653553 6.79497471347157 3.1396652442228e-05 0.459364421882238 7.64099816350711 6.65156482433294 0.738407445653553 0.119425393281326
AT1G80770_at 7.76156140525208 7.72968549040932 7.49600824493841 7.3180869943485 7.42231268570802 7.26762885655906 8.0401576751894 7.86629805158061 7.88289784873599 7.88899142356857 6.60350923997239 7.54226043791273 7.1036588170762 7.29383264020899 7.08451317239032 7.60248646714407 7.21018047834465 7.07996637455937 7.90869568225017 0.135663740016642 0.134975671181243 0.134825457549106 0.136823866860189 0.131026153448793 0.138506598068214 0.134351179338761 0.134805069046460 0.148725223117686 0.135063434524432 0.141023691735862 0.131379303850113 0.130437476538968 0.132651121581959 0.143427423613361 0.130454733628241 0.13563632662345 0.136897901441173 0.130888330731616 1 1|0 +|/ 30361597 30362376 30362021.8 30360009 30362856 + gene protein_coding_gene FALSE TRUE AT1G80770.1 PDE318 (PIGMENT DEFECTIVE 318); GTP binding similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G50920.1); similar to predicted GTPase, containing NOG1 domain [Thermococcus kodakarensis KOD1] (GB:YP_183603.1); similar to Os08g0158900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061039.1); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Nucleolar GTP-binding 1; (InterPro:IPR010674) -0.588446912476587 -6.78486644347286 3.18182664901593e-05 0.46550123875103 7.63084148905854 15.1545070613162 -0.588446912476587 0.0509928115445911
AT3G09200_at 11.1380473112653 11.4277999573962 10.6211618499918 10.7045792237207 10.6149740301195 10.4721085976614 11.1339624988076 11.4476714851942 11.2041661291199 10.9575920639984 10.3682559159452 10.6069287377214 10.3879059195452 10.3219155432866 10.7938492828896 10.1318783613850 10.3497890064081 10.1961168020020 10.8059017978416 0.0647866555141948 0.0637339351100153 0.0680400678147345 0.0655100039812916 0.0625354847365714 0.0721606700638778 0.0661956891690865 0.0642680453645834 0.0658945333102812 0.063057465486583 0.0633385455107306 0.064038749890974 0.0631152092875986 0.0636285420994121 0.0641167944132604 0.0653610481436474 0.0667714646655866 0.063575772373081 0.0646693251679016 3 3 - 2823434 2823946 2823720.636 2823096 2825120 - gene protein_coding_gene FALSE TRUE AT3G09200.1|AT3G09200.2 60S acidic ribosomal protein P0 (RPP0B) Identical to 60S acidic ribosomal protein P0-2 (RPP0B) [Arabidopsis Thaliana] (GB:Q42112;GB:Q8LCI7;GB:Q9SR42;GB:Q9SS70); similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1); similar to Ribosomal protein L10; Ribosomal protein 60S [Medicago truncatula] (GB:ABE83633.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.639152219315618 -6.78448332839085 3.18343651421069e-05 0.465704927663882 7.63045621582009 21.6369380908368 -0.639152219315618 0.079254296549462
AT2G30860_at 13.5121520614819 13.6034356719036 13.7221032874287 13.7159620148132 13.6471077199812 13.4520660225982 13.2958593920545 13.2006391133227 12.0962528091869 13.0239620227515 13.5600994957693 13.5161397355121 13.5029842704195 13.5477933016882 13.3409603829671 13.2683806569318 13.3869899191502 13.5619955650605 12.5072956866556 0.072108183652837 0.0694059586944383 0.0699735524137686 0.0704652926573184 0.0728516424875772 0.0777534453752194 0.0706698342454724 0.0685198160445912 0.0769129791086131 0.0694905441540137 0.0683097257833486 0.0686134274721004 0.0689668184297393 0.0683097257833486 0.072727462598964 0.0692229025830324 0.0693908027889538 0.0720361749847668 0.0720257493949096 2 2|0 +|/ 13146460 13147107 13146882.1 13146074 13147322 + gene protein_coding_gene FALSE TRUE AT2G30860.1|AT2G30860.2 ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase|ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATION-INDUCED 13), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G30870.1); similar to glutathione S-transferase [Pyrus communis] (GB:ABI79308.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)|similar to ATGSTF10 (EARLY DEHYDRATION-INDUCED 13), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G30870.1); similar to glutathione S-transferase [Pyrus communis] (GB:ABI79308.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.574726305627014 6.78412233824535 3.18495420908964e-05 0.465895101705633 7.6300931705179 26.5202513715157 0.574726305627014 0.0407611068244577
AT1G68520_at 10.3792484066633 10.4364061865977 9.51499355239837 9.52845476561623 10.5220848756313 10.1122156040401 10.0160038295487 10.1183726637269 10.149213420722 10.3707649471544 9.26179353593 9.36153106048955 9.05221472590791 9.43014431200802 9.27096695154518 9.6241462330651 9.16039437794727 8.95398741228565 10.0860460751928 0.136850883221492 0.136562031551295 0.138715106872590 0.133549220284706 0.135653228305568 0.135269382814194 0.138024979026381 0.135077861505736 0.146128774038208 0.133549220284706 0.140937674629011 0.135031128770949 0.140903237482856 0.147122624655639 0.146507217159277 0.137819266024121 0.150906294663839 0.148281259802712 0.133549220284706 1 1|0 -|/ 25712996 25713691 25713423.1 25712777 25714570 - gene protein_coding_gene FALSE TRUE AT1G68520.1 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 6 (COL6) [Arabidopsis Thaliana] (GB:Q8LG76;GB:Q93Y24;GB:Q9CA29); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G25440.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15937.1); similar to Os06g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057333.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.627840696877518 -6.78246329034106 3.19193925849997e-05 0.466884955340791 7.62842440752947 19.8116752224464 -0.627840696877518 0.0738114991085729
AT2G26400_at 6.55763199743427 6.7635386531839 9.149532462561 9.32613343904772 4.04451181089479 4.34487218726182 4.0992625990869 4.21277236200595 3.94750399703507 3.94865039877572 3.30268842219619 3.55259487260251 4.33728830423635 3.70735389513285 3.56635439434346 3.92426632618811 3.98148977524184 4.18584547532058 3.73401788165033 0.28404841408887 0.312618154349469 0.326394376122401 0.314851395105301 0.286262279641334 0.27506151810094 0.287280741905036 0.283489559310031 0.283738092750411 0.293240790586836 0.275506048246922 0.283069268353655 0.27506151810094 0.279976298666448 0.284876065702474 0.279091009493773 0.288473274462051 0.283932096672904 0.284580240245423 2 0|2 /|- 11239142 11239977 11239505.857 11238878 11240369 - gene protein_coding_gene FALSE TRUE AT2G26400.1 ARD/ATARD3 (ACIREDUCTONE DIOXYGENASE); acireductone dioxygenase (Fe2+-requiring)/ heteroglycan binding / metal ion binding Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD?)family. Identical to 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 (EC 1.13.-.-) (Aci-reductone dioxygenase 1) (ARD1) [Arabidopsis Thaliana] (GB:O48707); similar to ATARD2, metal ion binding [Arabidopsis thaliana] (TAIR:AT4G14710.2); similar to ARD-like protein [Brassica juncea] (GB:AAR03591.1); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Acireductone dioxygenase, ARD; (InterPro:IPR004313) 0.625486081342137 6.77986151706483 3.20292655667653e-05 0.468460038179509 7.6258065056433 9.91051157675693 0.625486081342137 0.0727419131046262
AT2G34810_at 6.1156569275123 6.46825585934719 6.35838115244909 6.60412051022438 6.53610142594539 5.88832573022764 6.24549588468895 6.20703965224854 4.0325089600157 4.14405568446935 5.49957372130009 5.52657301692828 5.54294449844131 5.49425288395978 4.60140370867454 5.95516076925142 6.13892425158736 5.18985713619023 3.89066581526993 0.201349228445510 0.196229868893931 0.204609842478869 0.201050080147165 0.198536542179250 0.206117973074972 0.193221134946988 0.201712643773932 0.204849464956923 0.211711141155651 0.196562347973525 0.192774963157405 0.201907752230556 0.197878686218314 0.2113790736777 0.197271855354798 0.197072809444496 0.206778722205001 0.208289134002388 2 2 + 14693446 14693962 14693702.545 14692335 14694141 + gene protein_coding_gene FALSE TRUE AT2G34810.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30720.1); similar to FAD linked oxidase, N-terminal [Medicago truncatula] (GB:ABD32603.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.779398109401175 6.77468893322607 3.22489109321492e-05 0.471640322382682 7.62059861551836 11.0609203436021 0.779398109401175 0.134694579602906
AT4G35420_at 3.79980487697841 3.87332997291564 3.55367303420769 2.95981778554801 3.76028623555946 4.02655442451528 3.51298408532817 4.04910647124947 5.28321230063837 5.29860949201506 4.13153540214362 3.87405555516371 3.62228966952614 4.0514955750197 3.96596748858844 3.66520585682197 3.36117691762052 4.38601019869927 5.24440078351851 0.278707194959252 0.280439851978222 0.278042807800334 0.288157091694084 0.301522529149966 0.306351331004603 0.291817712929524 0.285341716890931 0.308358781685903 0.280673857373814 0.28166151058658 0.278042807800334 0.282507214165572 0.286821569659968 0.278042807800334 0.282766961719995 0.308713770595236 0.281909780245417 0.281210075871477 4 4 - 16834368 16835277 16834707 16833938 16835624 - gene protein_coding_gene FALSE TRUE AT4G35420.1 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family similar to cinnamyl-alcohol dehydrogenase, putative (CAD) [Arabidopsis thaliana] (TAIR:AT5G19440.1); similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G68540.1); similar to dihydro-flavanoid reductase-like protein [Medicago truncatula] (GB:ABE80930.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.813456962051519 -6.76637068010391 3.26055275655891e-05 0.476823235119176 7.61221453435585 8.27075691495705 -0.813456962051519 0.146473773855358
AT3G52720_at 6.42917605235141 6.48680858292627 8.14999753867809 8.3605410540282 7.02951207438058 7.02085814356822 10.8058307918981 10.7312485843357 9.0184980888225 9.83057463224838 9.38468338145686 9.67508076641797 9.47952668925276 9.0276189322876 8.48474026402875 9.6688845821116 9.60376641631346 9.78839851354546 9.83219567096043 0.236683452995593 0.221951694673721 0.220114176239251 0.211848629211617 0.222960275355490 0.226072823640763 0.212939702659971 0.209604689672037 0.213580225162076 0.208436434570586 0.204407158056631 0.204407158056631 0.212825808899227 0.204407158056631 0.20846988003314 0.204626955032022 0.207948275358350 0.210033622483420 0.210390312068721 3 3|0 -|/ 19549833 19551432 19550643.6 19549668 19552262 - gene protein_coding_gene FALSE TRUE AT3G52720.1|AT3G52720.2 carbonic anhydrase family protein similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT1G08080.1); similar to Os02g0533300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047030.1); similar to OJ000126_13.1 [Oryza sativa (japonica cultivar-group)] (GB:CAD40596.2); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148)|similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT2G28210.1); similar to Os02g0533300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047030.1); similar to OJ000126_13.1 [Oryza sativa (japonica cultivar-group)] (GB:CAD40596.2); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148) -0.572187077190527 -6.76552840232967 3.2641872491223e-05 0.477322101439154 7.61136496841868 17.6015017230311 -0.572187077190527 0.0399480776732341
AT1G65000_at 4.90092361266361 5.10270382038078 5.93305265118366 5.51599222006642 6.02142436654314 6.03829584833054 3.73271217823792 4.12591675599832 4.37565678691691 4.20579659298762 4.14072847744669 4.12452226917208 4.20799982358069 4.75013740323384 4.09771243586909 4.2818305567942 4.50764051412697 4.48642989909697 4.44242672106157 0.232590778409643 0.233187493379992 0.242903203567833 0.232768332286756 0.227414612691372 0.244694365266703 0.225906142075154 0.229435481142205 0.225709987825773 0.226088768685359 0.2311267917135 0.225622083719360 0.231486107602626 0.229558751461290 0.236299986284950 0.225804892571836 0.23173551025595 0.234189922530508 0.225622083719360 1 1 + 24150863 24152173 24151732.727 24150707 24152352 + gene protein_coding_gene FALSE TRUE AT1G65000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38060.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP21387.1) 0.697479492568573 6.76351974577478 3.27287230557206e-05 0.478559388520747 7.60933846878143 9.50433695137743 0.697479492568573 0.10520088838895
AT3G56340_at 10.6400164624971 10.5845201717457 10.041385079826 9.97486976520976 9.9659622939076 10.0673244882295 10.7578798500092 10.7580911269382 10.1295488753858 10.2620360915736 9.6350359529345 10.0885483616507 9.62810828137049 9.4529821795302 10.5165754223794 9.4213147039179 9.57528903491292 9.63244529414689 10.1578424538634 0.0748730095540316 0.0757036485698969 0.0742293139556308 0.077274885155257 0.0742285066098774 0.0761849535500291 0.076252614227509 0.0780989562054802 0.086765991662516 0.0740874165675741 0.080467042297875 0.0769671200474218 0.0754365301515123 0.0875768389521217 0.0808070826296545 0.0765287581400868 0.0759392375568082 0.0770797550857845 0.0745177737574767 3 3|0 -|/ 20903328 20904181 20903857.444 20903108 20904422 - gene protein_coding_gene FALSE TRUE AT3G56340.1 40S ribosomal protein S26 (RPS26C) Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sativum] (GB:AAD47346.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Ribosomal protein S26E; (InterPro:IPR000892) -0.556048282878282 -6.76208600362367 3.27908669846706e-05 0.47943526618287 7.60789159202312 20.3122210935269 -0.556048282878282 0.0230744007842150
AT2G18690_at 9.21294535872032 9.48170393053332 9.6263411253097 9.85771634697935 9.49386026300823 8.35854889061376 3.67619507881918 4.00521639855039 6.64208957326108 4.48853028128547 4.12121333774048 6.06497032686882 3.19602972392939 4.94431302815776 5.29952066883021 3.45912054220761 3.65874998947965 3.4974498122828 3.73852618939613 0.346297014824958 0.34122511085677 0.345386669688502 0.347181235414584 0.34133222927784 0.340817430643657 0.322910524275083 0.327326766611286 0.330974738480534 0.32811927607508 0.322910524275083 0.322910524275083 0.322910524275083 0.322910524275083 0.322910524275083 0.328190346366276 0.323884359481359 0.337682423613562 0.328441426439283 2 2 + 8105122 8105631 8105293.818 8104502 8105909 + gene protein_coding_gene FALSE TRUE AT2G18690.1|AT2G18690.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18680.1); similar to Os08g0107100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060795.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90086.1) 1.03194518943075 6.75579240070086 3.30651571452574e-05 0.483412597463663 7.60153640428478 12.5823423957341 1.03194518943075 0.213563240468503
AT3G06350_at 9.03791372433612 9.04687215715532 8.62589503473938 8.27855137844408 8.57166319653043 8.11775756286989 9.25445423271436 9.23775625405327 9.36613079764538 9.51682458605093 8.82463698470537 9.00604355904688 8.88608928311139 8.88470158897843 8.51313703146635 8.84825226795184 8.63633437930756 8.96520000761538 9.4257567342017 0.135293745494174 0.134268464870164 0.138203704808399 0.146928065938259 0.139150577728684 0.141893798720217 0.136167486959827 0.136473594395097 0.144269616332060 0.134698094886147 0.135975135202284 0.134866289136326 0.137329074602760 0.1404829300318 0.151255474163318 0.139650128579086 0.140034862402146 0.135022130688017 0.133411483339633 3 3|0 -|/ 1924680 1925584 1924950.111 1924316 1927765 - gene protein_coding_gene FALSE TRUE AT3G06350.1 EMB3004/MEE32 (EMBRYO DEFECTIVE 3004, maternal effect embryo arrest 32); 3-dehydroquinate dehydratase/ NADP binding / shikimate 5-dehydrogenase Identical to Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplast precursor (DHQ-SDH protein) (DHQase-SORase) (Protein EMBRYO DEFECTIVE 3004) [Includes: Dehydroquinate dehydratase (EC 4.2.1.10) (DHQ); Shikimate dehydrogenase (EC 1.1.1.25) (SDH)] (EMB3004) [Arabidopsis Thaliana] (GB:Q9SQT8;GB:Q3ZLP7;GB:Q56ZH7;GB:Q6NLY1); similar to putative 3-dehydroquinate dehydratase/shikimate dehydrogenase [Fagus sylvatica] (GB:ABA54867.1); similar to 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 1 [Nicotiana tabacum] (GB:AAS90325.1); similar to dehydroquinate dehydratase/shikimate:NADP oxidoreductase [Lycopersicon esculentum] (GB:AAC17991.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Dehydroquinase class I; (InterPro:IPR001381); contains InterPro domain Quinate/Shikimate 5-dehydrogenase; (InterPro:IPR011342); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Shikimate dehydrogenase substrate binding, N-terminal; (InterPro:IPR013708) -0.680735141889294 -6.75138294728212 3.32587972125057e-05 0.486210356449622 7.59707998857768 17.8997513228081 -0.680735141889294 0.0989650306800872
AT3G21390_at 6.32719909615598 6.24326951442306 5.98739373553214 6.06344121411168 6.6661478555305 5.96940238691778 8.66672943420624 8.2797588772831 7.9136656200119 8.40069253958244 8.21647029568424 7.98740072201733 7.68359298494827 8.09218286785388 7.265034746745 8.33730041160315 7.29774262842355 7.58174727648352 8.22590724089201 0.241574209227137 0.238243620689941 0.251768327647198 0.251077490580910 0.235188094025740 0.256892404442561 0.244128077658414 0.235188094025740 0.250921915006863 0.237086570027384 0.239141900763243 0.237386074710793 0.238087437950901 0.240575336635506 0.239797885606508 0.239540721504085 0.250874536224502 0.248507474281531 0.241662159347782 3 3 + 7533265 7534383 7533808.818 7531408 7534550 + gene protein_coding_gene FALSE TRUE AT3G21390.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G48970.1); similar to Os01g0934200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045309.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL56581.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.790023703801494 -6.74955081670619 3.33396121495929e-05 0.487358450402749 7.59522742040783 14.7693039935444 -0.790023703801494 0.139309311098244
AT1G02260_at 6.23042087094974 6.08460172834434 5.71302500020649 5.66082341134992 6.5329060316857 5.83795120048629 3.81248195334661 4.10236541550467 4.24383886689718 4.14611041926897 5.21782392555467 4.88666391773347 4.88224337071352 4.86422001328376 4.72715151464852 5.06103844224298 4.4977168032939 4.77865791981504 4.21087508844003 0.250721723796586 0.243876327749956 0.243876327749956 0.250881613869167 0.250460465767382 0.261243461415679 0.246095810316319 0.249723068801147 0.251921433043159 0.248624009070603 0.248558843065151 0.244109024815089 0.248784087395030 0.247612869808556 0.248369554229005 0.243876327749956 0.254109126166967 0.24598067979547 0.247497067913635 1 1 - 440757 441453 441063.545 440441 442877 - gene protein_coding_gene FALSE TRUE AT1G02260.1 transmembrane protein, putative similar to Os03g0147400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048962.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE87631.1); contains InterPro domain Citrate transporter; (InterPro:IPR004680) 0.77143680788555 6.74721245177013 3.34430630772493e-05 0.488837253000153 7.59286218188667 10.0291790914573 0.77143680788555 0.133036482441523
AT4G20830_at 7.60299404883304 8.09061228536907 8.39823278952539 8.5219780665724 7.53673863301583 6.94824637604026 5.92712795390953 6.27337124551213 6.86076002966715 6.53965216424077 7.96541542919372 8.66315027694074 6.09685812116723 7.70367621125952 7.04237809747796 6.72354937073824 5.50501395974393 7.38253644562899 5.771006435035 0.216663339455234 0.22621561277453 0.223300330071426 0.226406971365795 0.216663339455234 0.22562065896022 0.228334076696391 0.22846229029516 0.238506225880742 0.221253483309809 0.216663339455234 0.220052824022201 0.224249226318825 0.231821753995207 0.219336052253899 0.223308076075651 0.244044796568217 0.227396335749944 0.220697027443895 4 4 + 11156539 11157056 11156735.636 11155464 11157817 + gene protein_coding_gene FALSE TRUE AT4G20830.1|AT4G20830.2 FAD-binding domain-containing protein Identical to Reticuline oxidase-like protein precursor (EC 1.21.-.-) [Arabidopsis Thaliana] (GB:Q9SVG4;GB:Q3E9Y2;GB:Q8H7B5); similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20840.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30740.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90038.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90036.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.811310972793506 6.7410890359634 3.37156021147984e-05 0.492787240509894 7.58666419955793 14.1753102325138 0.811310972793506 0.146769535756748
AT4G35110_at 7.41479312186267 7.52292629456489 8.5380243274898 8.35352782718375 8.06419269372253 7.58346922739078 7.31207432461857 6.96291821579714 6.27949721091524 6.5385267475741 7.21153366703572 7.04935817811338 7.29118354928916 7.47750691625285 6.45166553312212 7.70489437043367 6.86599936822476 6.60046038919282 6.6885584453004 0.199973327664584 0.196960223144687 0.201154291903594 0.207914426327518 0.19577725843401 0.197214687729194 0.194759379312412 0.202815945470301 0.212600763830310 0.198911108882736 0.205720862992563 0.201449002657639 0.192991629545536 0.205374641379055 0.213830696738543 0.192991629545536 0.203025407161122 0.204407820065844 0.216997779706283 4 4 - 16712753 16713214 16713022.727 16712467 16714958 - gene protein_coding_gene FALSE TRUE AT4G35110.1|AT4G35110.2|AT4G35110.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16900.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.70550332079869 6.74025419275823 3.37529431869935e-05 0.493299264677911 7.58581871993191 14.5108754446061 0.70550332079869 0.109276419649960
AT1G68780_at 3.53377341684910 4.38802806149587 2.3463178190485 2.36359512552086 2.90313405833487 3.60248882108019 4.78405175371767 5.12004991648955 5.28542231166611 4.79875360268134 5.47046687065402 6.07639678857815 5.10017210452066 5.04218269600319 5.42116416705883 4.86534705015189 4.29109168680568 4.52573272296869 6.14596024384609 0.256528815936652 0.249870922907085 0.255408783218031 0.257602114803433 0.258176588676026 0.254013461438339 0.253008397184039 0.257259577390831 0.261727839450934 0.256775489732012 0.258271327868228 0.253508005958487 0.250012335606402 0.256935793969676 0.254291796973256 0.249870922907085 0.261414252056582 0.249870922907085 0.249870922907085 1 1 - 25835579 25836119 25835817.455 25835466 25837507 - gene protein_coding_gene FALSE TRUE AT1G68780.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G25670.1); similar to unnamed protein product; contains similarity to elicitor-inducible receptor EIR gene_id:T5M7.12 [Medicago truncatula] (GB:ABE90677.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.98178397818191 -6.73804275263025 3.38520715552149e-05 0.494714173707911 7.58357855907047 8.88473719502066 -0.98178397818191 0.199729475615427
AT4G04750_at 3.36994998072663 3.51548141444686 2.30189246873002 2.44452380967779 3.32854249234226 3.23610450327197 5.10152504581782 4.57815353540115 4.49511065882095 4.13587776134709 4.47455732538952 4.50427569579966 4.50226106298597 4.6858535147219 4.27526994861258 4.23616159869516 3.85440427232639 4.28820089157713 4.55582992748568 0.243154488661522 0.231074924067896 0.249111464672329 0.2601380835568 0.229074030447068 0.241122926063283 0.243650920128324 0.229074030447068 0.238712774978964 0.235260579617988 0.234718208894278 0.241391299756525 0.235223371241903 0.230404989645989 0.251542216653096 0.238589943689228 0.263341395770802 0.250542374086955 0.229074030447068 4 4|0 +|/ 2421138 2422578 2421855.778 2417886 2422622 + gene protein_coding_gene FALSE TRUE AT4G04750.1 carbohydrate transporter/ sugar porter Identical to Sugar transporter ERD6-like 14 [Arabidopsis Thaliana] (GB:Q8GXK5;GB:Q9M100;GB:Q9ZS99); similar to sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT4G04760.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.678247376356816 -6.73785101583575 3.38606809034776e-05 0.494806130042518 7.58338429480024 7.85863623362587 -0.678247376356816 0.0985022551513826
AT3G19640_at 8.43433420712686 8.24732182555649 8.65632800617125 8.74537251912958 8.69740594673632 8.69903914232707 7.8119481836018 7.95473779803836 6.55379380354692 7.06218678843784 7.51480575880385 7.42173178382799 7.17771967409244 7.51263649483688 7.16803599203016 7.50839027699785 7.56025139276767 7.55122066313049 6.98245704450333 0.209707612479376 0.208299735147989 0.213255384870631 0.206697717287393 0.207274170211953 0.210306176337683 0.211159745626530 0.216058022989776 0.239226647041652 0.206697717287393 0.206697717287393 0.208122499380405 0.212245241852252 0.211565919037971 0.213598825971281 0.206697717287393 0.219520849621051 0.215256204985776 0.212380414670568 3 3 + 6822376 6823082 6822824.909 6820932 6823312 + gene protein_coding_gene FALSE TRUE AT3G19640.1 magnesium transporter CorA-like family protein (MRS2-3) similar to magnesium transporter CorA-like family protein (MRS2-1) [Arabidopsis thaliana] (TAIR:AT1G16010.1); similar to Os01g0908500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045144.1); similar to Mg2+ transporter protein, CorA-like [Medicago truncatula] (GB:ABE86185.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) 0.574077012870867 6.73619885687775 3.39349633669537e-05 0.495857684717927 7.58171011026397 15.5523083952811 0.574077012870867 0.0435376429821967
AT3G02150_at 6.30441040483304 6.7925729968529 7.54690425025025 7.63842273922907 7.35567061247528 7.43676782142903 7.03251339533517 6.98137500195992 4.9467205113101 5.15142781621909 5.13268085754865 5.27439191913929 5.77845964865489 5.5890322094946 4.64207856361153 5.74447453210507 6.13674091236419 5.33480634283578 4.49997932299169 0.262550447315220 0.255750518139852 0.262087729294360 0.278118562434522 0.261739105795822 0.268137177364122 0.258726908332737 0.254774851953540 0.293416822729821 0.253290134937512 0.257377970018008 0.260515662786220 0.256652490192465 0.258535343679670 0.262451889319051 0.253290134937512 0.272730817650202 0.262666029380663 0.256508527342930 3 3 + 391804 392309 392033.273 391098 392765 + gene protein_coding_gene FALSE TRUE AT3G02150.1|AT3G02150.2 PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor a chloroplast trans-acting factor of the psbD light-responsive promoter. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G60970.1); similar to putative transcription factor [Solanum tuberosum] (GB:CAD91129.1); similar to Os05g0513100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056024.1); similar to Os01g0763200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044333.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.652381989573139 6.73489855010933 3.39935491610026e-05 0.496679746791409 7.58039215752703 12.2961424894920 0.652381989573139 0.087537310355929
AT3G49350_at 7.58302725302322 7.55028424508924 7.82615603305274 7.59641764965966 7.04114115839591 7.26571620201963 5.86321311323251 5.89376089479239 6.22392571274891 5.78142410998265 5.8637235389902 6.53721184906286 6.30177225468139 6.34275736403796 5.88900423264986 6.49792842561613 6.83732239586629 6.69216663829076 5.68340897205429 0.217462480671855 0.217462480671855 0.22168304601935 0.222697067941640 0.217462480671855 0.235451216187533 0.217462480671855 0.222856481860164 0.229282222704066 0.219739579868076 0.229286882264592 0.217462480671855 0.218210221556577 0.217462480671855 0.226574060134495 0.217462480671855 0.224821463301176 0.231618911191189 0.226377729008908 3 3 - 18308668 18309219 18308905 18308391 18311174 - gene protein_coding_gene FALSE TRUE AT3G49350.1 RAB GTPase activator similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G24390.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE88406.1); similar to Os09g0528800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063739.1); similar to Os08g0547200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062427.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.591884645025897 6.73446212123856 3.40132369287381e-05 0.496933391528864 7.5799497446225 13.2107089531555 0.591884645025897 0.0561345548037703
AT2G26230_at 8.56467592961507 8.65422537100706 9.14923663453767 9.14293015423267 8.99654244237769 8.81472645190737 8.27748231498176 8.19279395032184 7.72805335835866 7.55728633884911 8.05007181877591 8.03522456286047 8.33383018740435 8.0266276025168 7.9071111188496 8.16883348063115 8.34435782388462 8.02467643708743 7.45521501634669 0.141174623495766 0.142762236347316 0.145695134979591 0.143486207444247 0.147456834649815 0.144061780635190 0.142400994445612 0.142853764873137 0.155151246915609 0.140098530701840 0.139598300755356 0.140508252225931 0.140252737897139 0.141971369259340 0.141920323179384 0.148524205192765 0.142795598869417 0.143376726964426 0.151186473234890 2 2|0 +|/ 11172594 11174014 11173286.778 11171653 11174273 + gene protein_coding_gene FALSE TRUE AT2G26230.1 uricase / urate oxidase / nodulin 35, putative Identical to Uricase (EC 1.7.3.3) (Urate oxidase) (Nodulin 35 homolog) [Arabidopsis Thaliana] (GB:O04420;GB:O64848); similar to uricase [Lotus japonicus] (GB:BAB18538.1); contains InterPro domain Uricase; (InterPro:IPR002042) 0.56736062688278 6.73442078634098 3.40151022235237e-05 0.496933391528864 7.57990784136675 16.5698399228824 0.56736062688278 0.0380279690086951
AT1G17380_at 3.60094562173694 4.23495318253966 5.30762960322282 5.19617587467404 3.11022662350177 3.28712100521580 2.74345763852079 2.77333903595277 2.97077131744490 2.56611223937986 3.62917391812983 3.18608459700053 2.96236446911265 3.55917909009431 3.24525796396415 4.08376592375347 3.84572978729534 3.25335923584111 3.20758073685284 0.232235407510289 0.230355472159322 0.241231194630662 0.24479834858097 0.224503067481591 0.228151284403448 0.231903323027326 0.226612496497657 0.232718190415283 0.233961726470448 0.226393358111048 0.225317549813503 0.234921982768564 0.227938963173262 0.226158334910077 0.229071153779028 0.233353892250751 0.224503067481591 0.23480343360861 1 1|0 -|/ 5955724 5956344 5956002.4 5955481 5957205 - gene protein_coding_gene FALSE TRUE AT1G17380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72450.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); similar to Os03g0402800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050322.1); contains InterPro domain ZIM; (InterPro:IPR010399) 0.721453674444563 6.73272614134966 3.40916699657121e-05 0.498011114859122 7.57818965642842 6.97444897535797 0.721453674444563 0.115645589056570
AT1G17170_at 2.84650012250579 2.91139498514502 3.91151932356738 4.13784026558481 2.9309347627691 2.80287380161007 2.31725693840109 2.20336449586556 1.42222607793732 1.63956559650830 1.66569027876243 1.85677173546173 2.15155494836373 1.59165048545896 1.30902147609461 1.58538758966722 1.62168819656481 1.49397112140131 1.04722092118304 0.218752446543595 0.221614870603683 0.235497668487992 0.236426165295087 0.220473326949823 0.223565533735006 0.215415597019443 0.216655819594465 0.222577774763569 0.211974079618185 0.212401520842028 0.212448808806885 0.210703599058171 0.210014309015098 0.218013046504357 0.210906416457653 0.216386400314867 0.210014309015098 0.222296902686201 1 1 + 5870083 5870636 5870347.273 5869839 5870833 + gene protein_coding_gene FALSE TRUE AT1G17170.1 ATGSTU24 (Arabidopsis thaliana Glutathione S-transferase (class tau) 24); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17180.1); similar to glutathione transferase [Carica papaya] (GB:CAA04391.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.582979508332885 6.73179838087708 3.41336664806087e-05 0.498590466282251 7.57724881141974 4.5222795090218 0.582979508332885 0.0503953514946526
AT3G47550_at 8.90462216157753 8.90536438234277 8.92778443784494 8.93159676384549 9.64739826323448 9.24481850382981 8.18333421214314 7.98669936703016 7.78521177808293 7.51447176925432 8.19049072281761 8.06286293277157 8.28863975451277 8.34005851654544 8.02920491783257 7.86072964089899 7.92873617004503 8.16611754321928 7.32081309204016 0.148227267205997 0.151934234797454 0.148028314708780 0.154734256283481 0.152126678529811 0.157245876297938 0.149339225262396 0.150061338604989 0.149685476567309 0.16057442661044 0.144791774664956 0.145522058832530 0.145302937146089 0.146589028748925 0.146734448539565 0.146548631867274 0.15117054691566 0.152384930149543 0.15786981047677 3 3|0 +|/ 17535180 17536201 17535798.9 17534443 17536525 + gene protein_coding_gene FALSE TRUE AT3G47550.1|AT3G47550.2|AT3G47550.3|AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G62460.1); similar to Os11g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068224.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52455.1); similar to Os08g0436200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061887.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G62460.1); similar to Zinc finger protein, putative [Solanum demissum] (GB:ABI34360.1); similar to Os11g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068224.1); similar to Os08g0436200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061887.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.630541969893275 6.730713499179 3.41828457167246e-05 0.49927464453848 7.57614845222913 16.6657125471258 0.630541969893275 0.0775375297526576
AT1G70300_at 6.2613604564191 6.73605914462545 7.30271565231877 7.39813953245107 7.08386674316238 6.82066146636876 6.03038876548553 6.28433173067103 4.2687737310772 4.86441260350499 4.63707300253953 4.3350506465699 5.6276083434206 4.99206977984032 4.4914868334787 5.25037915454735 6.39487870543922 4.64160164120888 4.31854299545872 0.27802344891463 0.280897702390277 0.284269663043457 0.282237594603652 0.291902865663797 0.286843507768529 0.284300018142687 0.28402221805511 0.280150903363705 0.280070592621043 0.27802344891463 0.27802344891463 0.27802344891463 0.278969325563013 0.279222573699516 0.27802344891463 0.280879271686518 0.283127659658984 0.280360738132975 1 1 - 26481699 26482231 26482045.909 26481543 26485293 - gene protein_coding_gene FALSE TRUE AT1G70300.1 KUP6 (K+ uptake permease 6); potassium ion transporter potassium transporter Identical to Potassium transporter 6 (AtPOT6) (AtHAK6) (POT6) [Arabidopsis Thaliana] (GB:Q8W4I4;GB:O64607;GB:Q9M7K0); similar to KT2 (POTASSIUM TRANSPORTER 2) [Arabidopsis thaliana] (TAIR:AT2G40540.2); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to putative high-affinity potassium transporter protein 1 [Nicotiana tabacum] (GB:ABI14646.1); similar to putative high-affinity potassium transporter 1 [Nicotiana rustica] (GB:ABF85693.1); similar to putative high-affinity potassium transporter protein [Phytolacca acinosa] (GB:AAX13997.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.692834780487612 6.72314622785829 3.452800173129e-05 0.50428146528549 7.56846791206953 11.5047795814682 0.692834780487612 0.105009907779213
AT3G22550_at 4.35482827208834 4.52494202072109 5.9046722111004 6.2395909105611 4.849515028675 4.4886669491064 5.97628914064569 6.07333346856753 2.60258201683982 3.3690847977173 3.36825369830005 3.68446373641427 3.75729198086679 4.2834162737565 3.54996298157368 4.67462855653082 5.62618092175904 4.32394148990296 2.95622016523626 0.263845678554307 0.266123861108969 0.284621376662244 0.276149543975049 0.263921753598849 0.276010441600362 0.265380598243468 0.272485711217778 0.283774075693875 0.27423613372815 0.270640818640851 0.265548247373019 0.289631742928834 0.276372667718389 0.274009156947266 0.263845678554307 0.263845678554307 0.274639842272239 0.277805068256662 3 3 - 7992094 7992519 7992314.364 7991653 7993461 - gene protein_coding_gene FALSE TRUE AT3G22550.1 senescence-associated protein-related similar to MARD1 (MEDIATOR OF ABA-REGULATED DORMANCY 1) [Arabidopsis thaliana] (TAIR:AT3G63210.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE87128.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.66040908882264 6.7204284742107 3.46528737002670e-05 0.506070567518699 7.56570721028647 8.8687196409261 0.66040908882264 0.0916925462933842
AT2G29660_at 3.15789166661462 3.54059251940957 3.37963641255993 3.34315538229615 4.32345542934571 4.7384694104645 2.85419688958374 2.81992254540807 2.66336151393551 3.17197516902763 2.91462599007676 3.39567290208363 3.95473389419462 3.47380546905888 3.00200545851454 4.0791062290458 3.68338985664033 3.35779939687046 3.11998411865445 0.241609091576013 0.247966862748633 0.241609091576013 0.241609091576013 0.246215585322545 0.249696216923414 0.244558221763406 0.243631098191777 0.266809080998418 0.257791181186917 0.246480990458707 0.241940184751859 0.25118957339758 0.241609091576013 0.247205722128038 0.241609091576013 0.258551041727382 0.243103363460335 0.24762250364689 2 2 + 12687047 12687497 12687263.273 12685967 12687744 + gene protein_coding_gene FALSE TRUE AT2G29660.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G75710.1); similar to H0814G11.16 [Oryza sativa (indica cultivar-group)] (GB:CAJ86349.1); similar to CAA30374.1 protein [Oryza sativa] (GB:CAB53477.1); similar to Os03g0264600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049642.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.675281859550333 6.71855768090062 3.47391119697219e-05 0.507295252093849 7.56380615629727 6.75353969867687 0.675281859550333 0.0980782087236916
AT2G41220_at 7.90644086605973 7.95535651915391 8.26949937602674 8.66788678394111 8.11654387024999 8.10986707319443 7.3039134380973 7.32337943291137 6.69944436286582 6.93781834777906 7.33179443318934 7.47795526175111 7.47551924048689 7.69504534556876 7.0867382152507 7.9034085159135 8.1190543238571 7.64712793592391 7.46334091805932 0.169312230785282 0.167442621643084 0.168831589409235 0.174257351146994 0.176906804113497 0.166871418449969 0.174107305719343 0.181053343807261 0.176604137086729 0.171328183887060 0.177989552948180 0.168598798941744 0.170649417528498 0.175762480386761 0.181184454465105 0.171869893547358 0.170548279397048 0.168941334093821 0.177502572483199 2 2|0 +|/ 17194652 17195400 17195021.222 17184742 17195829 + gene protein_coding_gene FALSE TRUE AT2G41220.1 GLU2 (Glutamate synthase) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. Identical to Ferredoxin-dependent glutamate synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT 2) (GLU2) [Arabidopsis Thaliana] (GB:Q9T0P4;GB:O80665); similar to GLT1 (NADH-dependent glutamate synthase 1 gene) [Arabidopsis thaliana] (TAIR:AT5G53460.1); similar to GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT5G04140.1); similar to Ferredoxin-dependent glutamate synthase [Medicago truncatula] (GB:ABD28330.1); similar to Ferredoxin-dependent glutamate synthase, chloroplast (Fd-GOGAT) (GB:Q43155); similar to ferredoxin-dependent glutamate synthase (GB:AAA18948.1); contains InterPro domain Ferredoxin-dependent glutamate synthase; (InterPro:IPR002932); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Glutamate synthase, central; (InterPro:IPR006982); contains InterPro domain Glutamate synthase, alpha subunit, C-terminal; (InterPro:IPR002489); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583) 0.613611288944379 6.71732204344285 3.47961975448198e-05 0.508094076549459 7.5625502203193 15.2694183959014 0.613611288944379 0.0695517808353014
AT2G30550_at 7.46183348298021 7.78611918492725 9.05071784048746 9.08966930997995 7.42151442377215 7.11544984083986 6.55108884990022 6.91239692721614 6.80448887230016 6.74665897637589 7.06496558680894 7.59226731768674 7.44044818419463 7.39527868217643 7.15273502210708 7.58795994472691 6.36337494252751 7.2031332437275 7.02697080186057 0.175866720908057 0.177001839773776 0.189070662330938 0.188685237353029 0.175503575360119 0.192228931628934 0.179163121394269 0.173359785386346 0.188637033832919 0.176306305281785 0.175119424355408 0.176434055285445 0.177691593917646 0.184413049832409 0.177436088337674 0.173829330087458 0.195285184185054 0.177447971438096 0.175467976734348 2 2 + 13023095 13023984 13023452.818 13021925 13024230 + gene protein_coding_gene FALSE TRUE AT2G30550.1|AT2G30550.2 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06800.2); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921)|similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06800.1); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.678562862248082 6.71581584467469 3.48659189454585e-05 0.509077282522639 7.56101894295622 14.7157953570162 0.678562862248082 0.0995474280403052
AT1G12990_at 8.41678722530867 8.68292973516076 8.60816833006892 8.97566606846431 7.96132674953263 7.6986367766377 7.47658447894035 7.80423392278948 6.67410339690987 4.88749875704851 7.1168712598006 6.89746754865748 7.28715464542626 7.17730958474403 6.58720227054248 6.46811150467026 6.61820464663604 6.99667461256965 5.58483042495784 0.252583837299843 0.254369153271735 0.252301426456619 0.254960596728384 0.250557334631367 0.253163799256986 0.255735491723518 0.249310179729955 0.263034038154079 0.262097073214437 0.248740349296418 0.250575055149536 0.250698311179641 0.252873932149522 0.256164466407558 0.248347527201794 0.273507191227888 0.247569637638567 0.257229023260132 1 1 + 4434964 4435502 4435235.091 4433638 4436073 + gene protein_coding_gene FALSE TRUE AT1G12990.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G27540.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G67880.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); similar to beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula] (GB:CAI70376.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) 0.69698131172576 6.71470139462896 3.49176028658649e-05 0.509797001841628 7.55988569979068 14.5075926785810 0.69698131172576 0.106992940974904
AT2G04850_at 5.25066661393797 5.61616687106309 5.27050624528243 5.5401789305329 5.06970442877457 4.94762859617145 7.29076211477913 7.8219471054824 6.13961572684937 6.06573350004635 5.73072159836392 5.7349783593656 5.84616370944866 6.35211994111212 5.43929190577313 6.25636461002745 6.6140612875367 5.68966080575444 6.23786515460004 0.207791057348543 0.207287336670892 0.209013714755858 0.208767842456876 0.208744901996547 0.20681982796914 0.214444476956350 0.209182209964945 0.207350282286182 0.213129625265704 0.215657635776689 0.208352800840373 0.208095105293454 0.20416425694396 0.209068023185393 0.207171272277652 0.220623810652985 0.20416425694396 0.214430597756019 2 2 + 1705058 1705450 1705248.182 1704280 1705775 + gene protein_coding_gene FALSE TRUE AT2G04850.1 auxin-responsive protein-related similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G25290.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN59777.1); similar to Os03g0194300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049250.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.738849488058906 -6.71464990230338 3.49199928674045e-05 0.509797001841628 7.55983333426575 11.903774315422 -0.738849488058906 0.122780277594387
AT1G51310_at 4.40822600070252 4.24024364443257 3.99046862119045 3.88572898959249 4.18302450266794 3.69498863010518 5.21882578767665 4.62057516284044 4.23205512004454 4.12280403755041 2.9067217978762 2.94475779149722 3.81831465614159 2.9315764286926 3.41917528534421 4.21737227476584 4.14267435328170 3.45684895747691 4.72391059013637 0.231541552165133 0.236896408643943 0.234500197314449 0.236292866361055 0.231541552165133 0.236518231545242 0.231541552165133 0.235630364731940 0.244545963462702 0.233448719446885 0.231541552165133 0.239912805538840 0.238714414442751 0.239180403677662 0.248131306042142 0.231541552165133 0.239661523108518 0.236807497655863 0.242775812345225 1 1|0 -|/ 19022903 19023628 19023149.333 19022647 19025472 - gene protein_coding_gene FALSE TRUE AT1G51310.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase similar to Os03g0174600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049129.1); similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55803.1); contains InterPro domain tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; (InterPro:IPR004506) -0.781662342899965 -6.71260900265445 3.50148620521862e-05 0.511146956237815 7.55775747836909 8.19989522192351 -0.781662342899965 0.137931328993781
AT4G08300_at 6.95760803259798 7.24714001250249 7.65875397200988 8.08835052952972 6.4172842740325 5.58720159722235 9.80748663728162 9.82375309120472 7.72557379446897 8.35549010990973 7.98054053180906 7.16057831231354 8.23607045395801 7.63217550562507 6.43866684953596 7.93066783515676 8.21847950457042 7.41397469308357 7.50289816010024 0.236948152711462 0.238996071220062 0.235948114677607 0.238992595125552 0.232676638200208 0.254631098756123 0.242284641506414 0.238174352452374 0.259725036816707 0.235533328872844 0.234363105878509 0.232673988814414 0.238615296465648 0.252766466898539 0.244817766450472 0.232673988814414 0.234508050986825 0.249219793140836 0.23351658552648 4 4|0 +|/ 5246664 5248051 5247489.778 5244888 5248339 + gene protein_coding_gene FALSE TRUE AT4G08300.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G44800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.878012913800592 -6.71249689753895 3.50200811482775e-05 0.511188124521407 7.55764343352002 15.4423047177558 -0.878012913800592 0.169353580295848
AT3G27300_at 7.73005626873503 7.78256171695047 7.49402962715441 7.80074713289226 8.58718412611813 7.3578377375153 6.89186126779188 6.34048496512713 5.5596944351274 6.57292715198569 7.31744661544048 7.75646678986311 7.2398870554622 7.89827511462991 7.8099246883464 7.52865204737475 7.92630192162913 7.29311558474759 5.83836783584832 0.224059911126328 0.219097295572306 0.224650569676424 0.216998138817880 0.219896505877728 0.222535741753446 0.212974332056198 0.221130429560459 0.242793252904695 0.224893394497102 0.214839218878404 0.214867457898649 0.222985752235120 0.219891284508965 0.223177626850369 0.212974332056198 0.216139202058383 0.214580463013047 0.221713483513057 3 3|0 -|/ 10084557 10085650 10085085.4 10084286 10087933 - gene protein_coding_gene FALSE TRUE AT3G27300.1|AT3G27300.2|AT3G27300.3 G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5); glucose-6-phosphate 1-dehydrogenase|G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5) Identical to Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 (EC 1.1.1.49) (G6PD5) (G6PDH5) (ACG9) [Arabidopsis Thaliana] (GB:Q9LK23;GB:Q8VZD0;GB:Q9SUK0); similar to G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G40760.1); similar to Glucose-6-phosphate dehydrogenase [Medicago truncatula] (GB:ABE83959.1); similar to glucose-6-phosphate 1-dehydrogenase cytoplasmic isoform-like [Solanum tuberosum] (GB:ABB55386.1); similar to glucose-6-phosphate dehydrogenase [Populus suaveolens] (GB:AAR26303.3); contains InterPro domain Glucose-6-phosphate dehydrogenase; (InterPro:IPR001282) 1.11481876040090 6.70834396811518 3.52140114219571e-05 0.513983710714886 7.55341720710325 14.2913896227058 1.11481876040090 0.239300300781541
AT2G43000_at 5.30666946476996 5.49344820515343 6.44817990067208 6.17515468667087 3.96968874598197 3.50553796364979 1.59121587729303 1.6784588978338 2.06605433789721 1.79169526204417 1.68274589063091 1.63187604164020 1.95050256306147 1.95555014421335 1.90892423608858 1.45121236875434 1.79637408716762 1.78651058195002 1.90602672422436 0.311707967291559 0.318467820450708 0.325458928910905 0.311085083539639 0.309938571930662 0.319234944771749 0.299964640166686 0.299964640166686 0.30532624228042 0.300993473993843 0.307101945616711 0.301155754020237 0.303719995633193 0.300515588294765 0.302917361012714 0.307987964360627 0.299964640166686 0.312624250033201 0.301763252396642 2 2|0 -|/ 17887763 17888957 17888203.2 17887694 17889661 - gene protein_coding_gene FALSE TRUE AT2G43000.1 ANAC042 (Arabidopsis NAC domain containing protein 42); transcription factor Identical to Putative NAC domain-containing protein 42 (ANAC042) [Arabidopsis Thaliana] (GB:Q9SK55); similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G12910.1); similar to putative development regulation gene OsNAC4 protein [Oryza sativa (japonica cultivar-group)] (GB:BAC45041.1); similar to Os03g0777000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051438.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.678197713723762 6.70649506684195 3.53007201741784e-05 0.515214010942133 7.55153477154682 6.11690459970823 0.678197713723762 0.0997846395210833
AT3G25020_at 6.84769833619299 7.01643907849609 7.58061404319562 7.51929366508804 6.66393751801101 6.46878428311112 3.06250368384884 3.74704206390584 4.52308331510442 3.79811218313742 3.87580863007593 3.92712918308148 3.4095217686337 3.38850938237463 3.54851331074088 3.89174153563325 3.81425020965289 4.11002109094272 4.08848220136640 0.288591225020400 0.287196414184242 0.283421179785847 0.284827573397219 0.283242918927382 0.280857121262948 0.281279554049213 0.273204823456989 0.276560457307407 0.277636456645338 0.28569550100764 0.274444039040661 0.278639263045950 0.283772509136818 0.275218107317316 0.271409381759208 0.280200620240302 0.271409381759208 0.274088436314117 3 3 - 9116896 9117446 9117059.455 9116875 9119547 - gene protein_coding_gene FALSE TRUE AT3G25020.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G24982.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25010.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.749432121214849 6.70338348483768 3.5447162729474e-05 0.517315892873944 7.54836549818205 10.0544121450285 0.749432121214849 0.127040418294535
AT4G25000_at 6.38249387200197 6.97437984433071 8.43886737144256 8.1465984927605 7.75592316758993 7.65556278059109 3.97894182334346 4.78788034435506 3.55643290085344 3.46833629088677 3.32131332744451 3.07174934453283 2.9447642805122 3.4502159272399 2.83103311753192 2.93671271335108 3.29035734388872 2.54228954844353 4.02916379938314 0.346911332134431 0.346755922550837 0.361596292068869 0.349429645549786 0.351702603101611 0.360560947343496 0.331260386594513 0.334324337206021 0.331260386594513 0.332654950512255 0.33547471278024 0.333164038511549 0.331260386594513 0.331260386594513 0.33459486798823 0.333001820807129 0.336850297455561 0.334391750626337 0.331260386594513 4 4|0 -|/ 12852126 12852697 12852476.1 12851979 12853855 - gene protein_coding_gene FALSE TRUE AT4G25000.1 AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). similar to AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G76130.1); similar to alpha-amylase [Ipomoea nil] (GB:BAC02435.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase beta-sheet, C-terminal; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046) 0.916112051040928 6.70315184977003 3.54580903545919e-05 0.51743991254456 7.54812950540897 10.1316803524232 0.916112051040928 0.181518078738451
AT1G59740_at 3.04416185853774 3.33341773131297 2.38896152645469 2.66628666347052 2.93086843037459 2.71690824597351 5.6100698633289 5.85917470434376 3.92404268567959 3.92477331416017 5.10502813851434 4.05362346093162 4.16262988644715 4.02600964871687 4.58314833910746 4.718354997231 4.01244142456463 5.43877590487164 4.2550175188276 0.304091919012835 0.294531927924553 0.309252719652704 0.308650266631048 0.294531927924553 0.305622658115870 0.303158305704320 0.301051422111496 0.303054493920371 0.307397999071724 0.294531927924553 0.295001338690202 0.299435304742358 0.297061407002010 0.300027531623283 0.294531927924553 0.311348465549753 0.321644246485387 0.296060811158093 1 1 + 21975382 21975892 21975672.455 21971736 21976076 + gene protein_coding_gene FALSE TRUE AT1G59740.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G33440.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE78967.1); similar to P0076O17.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE02510.1); similar to POT family, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96656.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.654029760326772 -6.70277912361225 3.54756816822269e-05 0.517661147107055 7.54774974889949 7.84228745194319 -0.654029760326772 0.089656742688326
AT4G38240_at 6.58877750207786 6.43621978737657 7.09696141933477 6.81057298552341 7.32865854491133 7.09800938246865 6.17252815156474 5.80461068686319 5.39040544839375 5.43492928232608 6.03411988597129 5.60142340233898 6.13754939516798 5.62656554199436 5.53135487597424 6.29743220513918 6.45971696980274 5.43562094435671 5.36394056965874 0.189384932180462 0.19459616888246 0.192814576787442 0.194105598982816 0.194391104434534 0.203870718385073 0.203767327562502 0.200372669824143 0.212021773802396 0.196009881390546 0.189384932180462 0.189384932180462 0.19262728122832 0.193822823596356 0.197928970108842 0.194344217438290 0.196442225744120 0.204971725856339 0.193301037749088 4 4|0 -|/ 17932036 17933450 17932673.125 17931564 17935319 - gene protein_coding_gene FALSE TRUE AT4G38240.1|AT4G38240.2 CGL1 (COMPLEX GLYCAN LESS); transferase, transferring glycosyl groups|CGL1 (COMPLEX GLYCAN LESS) Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis. similar to N-acetylglucosaminyltransferase I [Nicotiana tabacum] (GB:CAC80702.1); similar to alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [Nicotiana tabacum] (GB:CAB53347.1); similar to N-acetylglucosaminaltransferase I [Nicotiana tabacum] (GB:CAC80701.1); contains InterPro domain Glycosyl transferase, family 13; (InterPro:IPR004139) 0.663532176777972 6.70228530174812 3.54990027039821e-05 0.517965948453802 7.54724657776258 12.3104913088748 0.663532176777972 0.0938100726353304
AT4G01010_at 6.05536018232908 6.39706373238168 7.14443884618062 7.40436692288414 6.60119404655872 6.01364957189894 3.92154998106236 3.7272893237621 4.48051542449212 3.95701107876616 4.07812454503791 3.47571177875379 3.81977232731479 4.42802727394588 3.72341420541107 4.32372624557765 3.99823251725796 3.66160133796116 4.12815892276185 0.291340964606589 0.293960504428079 0.28717028198721 0.284987234578081 0.295526229088953 0.281736507076357 0.282014537939063 0.283265958701276 0.288900653955866 0.278981159224613 0.286468640207251 0.285221925547574 0.278981159224613 0.284129151867637 0.297100978509894 0.278981159224613 0.295702822699224 0.284182694951877 0.278981159224613 4 4 - 434577 435169 434796.455 434569 437242 - gene protein_coding_gene FALSE TRUE AT4G01010.1 ATCNGC13 (cyclic nucleotide gated channel 13); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 13 (Cyclic nucleotide- and calmodulin-regulated ion channel 13) (CNGC13) [Arabidopsis Thaliana] (GB:Q9LD40); similar to ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G01340.1); similar to CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1), calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G53130.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to Probable cyclic nucleotide-gated ion channel 10 (Cyclic nucleotide-and calmodulin-regulated ion channel 10) (CaM-regulated potassium ion channel) (GB:Q9LNJ0); similar to cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] (GB:AAF33670.1); similar to cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] (GB:AAF33669.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821) 0.757805506115474 6.69517968792671 3.58363957001769e-05 0.522853013265581 7.54000204213311 9.97168311967266 0.757805506115474 0.130340107880228
AT1G18450_at 7.987881489933 8.28064065279822 7.65235646339036 7.83209109280667 7.96164796153216 7.91502536313427 8.0004764539755 7.98865037918917 7.96026440735857 7.5392309930096 6.84321460703769 6.88312093917419 6.92488759699894 6.84115908585035 6.50649150119856 6.95092073354972 7.19468234262354 6.80179932057131 7.99899282575209 0.198494762219582 0.203186934675639 0.203845922387016 0.199038283779030 0.203645216940620 0.211433222758881 0.208993964090637 0.205712259885181 0.214790383212838 0.204470408680859 0.20344856886398 0.19913993845364 0.203011369086246 0.211470249795492 0.209943311068588 0.201227764621570 0.204621131781534 0.220764846669582 0.198494762219582 1 1|0 +|/ 6350143 6351721 6350885.875 6348100 6351966 + gene protein_coding_gene FALSE TRUE AT1G18450.1 ATARP4 (ACTIN-RELATED PROTEIN 4); structural constituent of cytoskeleton Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to Putative Acttin-related protein 4 (ARP4) [Brassica oleracea] (GB:AAW81736.1); similar to Os08g0137200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060954.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.594338458294663 -6.69073614452231 3.60491329699120e-05 0.525920800898045 7.53546744415608 15.3029031943861 -0.594338458294663 0.0600292648370499
AT1G11310_at 10.5982042800632 10.5105291964954 11.1209500119691 10.9506888694290 10.6918511246925 10.4349218022478 9.16281186128866 9.10254569592706 10.0744011768996 9.35874970197803 9.752627534549 10.0012616625009 9.65185743210802 9.9417810640739 9.50735035706835 9.93365220728438 9.61614204463968 10.1207769726330 9.35189835401 0.109171054108788 0.105879483348922 0.10808092862919 0.108262904665634 0.106948309010230 0.109108899263389 0.107172313207267 0.107006720543427 0.105673003119243 0.107239778524774 0.107345769229156 0.103231928751534 0.109853476111437 0.114326069314255 0.109074334704645 0.106578616434816 0.119787776345957 0.103231928751534 0.106248585710546 1 0|1 /|- 3800941 3801707 3801166.556 3800742 3804185 - gene protein_coding_gene FALSE TRUE AT1G11310.1 MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. Identical to MLO-like protein 2 (AtMlo2) (MLO2) [Arabidopsis Thaliana] (GB:Q9SXB6); similar to MLO6 (MILDEW RESISTANCE LOCUS O 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G61560.1); similar to MLO12 (MILDEW RESISTANCE LOCUS O 12), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G39200.1); similar to MLO1 [Lotus corniculatus var. japonicus] (GB:AAX77015.1); similar to MLO1 [Capsicum annuum] (GB:AAX31277.1); similar to MLO1 [Brassica rapa] (GB:AAX77014.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.588372471017827 6.68925189681496 3.61204935771164e-05 0.526925760302974 7.53395206526526 20.0269116404240 0.588372471017827 0.0564276209539566
AT2G26360_at 3.30067074101745 3.26889852126198 3.88967875685492 3.52756525844786 3.92319745156201 3.39486842191481 2.64273360002271 2.61770268073769 2.91410034497719 3.12944702184991 3.74435096478795 3.95312701109598 3.56009087174781 4.14878247070871 3.30621120577848 3.54334665234641 3.77509377810293 3.95091124491495 3.15080870896353 0.225940278043566 0.223102249987679 0.228268140148246 0.232277150782914 0.240486406617372 0.233609456509297 0.223027783646707 0.241115942336399 0.242024819430301 0.227972723088992 0.225622298759545 0.227415155705981 0.232270818328377 0.226306096856512 0.224996294907999 0.223027783646707 0.243245046989780 0.232756191288049 0.223027783646707 2 2 - 11228701 11229180 11228942.9 11227795 11230291 - gene protein_coding_gene FALSE TRUE AT2G26360.1 binding similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G35800.1); similar to Mitochondrial carrier protein, putative [Medicago truncatula] (GB:ABE77885.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.704640001386733 6.68794079291931 3.61836556644799e-05 0.527810985177768 7.53261316308662 6.72692674574357 0.704640001386733 0.111064667218790
AT3G60450_at 7.81870576924174 7.95195799999138 8.64407683423588 8.74840709857188 6.9797449487093 6.41192366542397 5.33362889187664 5.41429000093611 6.34930002098166 5.06756956057916 5.70427204679396 6.69520737149943 4.80378358954743 6.41316154743102 6.39485933963219 5.64461804515494 5.62171647500349 6.0750403852704 5.43004115118864 0.223285087782532 0.222994477364188 0.223561295700855 0.231779515512238 0.222177347558042 0.227789106219477 0.243276341031189 0.22477669393584 0.233503798220759 0.229488902348913 0.223100670015666 0.225934418474311 0.228546487074534 0.219867345314171 0.222112497995056 0.221998875911404 0.226803099471848 0.221062384790365 0.219867345314171 3 3|0 +|/ 22352190 22353138 22352658.2 22351932 22353285 + gene protein_coding_gene FALSE TRUE AT3G60450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60440.1); similar to pRIB5 protein [Ribes nigrum] (GB:CAA07566.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain PRIB5; (InterPro:IPR012398) 0.684918955174455 6.68329489800073 3.64084254900976e-05 0.531053294198564 7.5278665088418 12.9302015316024 0.684918955174455 0.103481506641016
AT4G13840_at 9.60170197307446 9.61429497803594 8.30389144985388 7.89474515313316 9.01917057263831 8.46340542344173 10.2395020376314 10.1276308878953 10.4062621875505 10.4154977835126 10.6013129136006 10.8273204607109 10.4608547381499 10.2586608397742 10.4763623912694 10.5347726584619 9.83112640094823 10.1405357460328 10.3076945726600 0.126817758946254 0.131318318905022 0.146460632911005 0.144096343867927 0.127838305381367 0.132914529035138 0.139469743541868 0.129292914564269 0.133114125856140 0.131595499194668 0.133301434664421 0.131455727488722 0.126937420858343 0.127282727425720 0.134227568717256 0.130885847337835 0.142062265212783 0.134353278289205 0.133801536181032 4 4 - 8014084 8014645 8014434.364 8013889 8016482 - gene protein_coding_gene FALSE TRUE AT4G13840.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G23840.1); similar to Os04g0611200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053836.1); similar to orf [Zea mays] (GB:CAA61258.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.730297949340852 -6.68089014185838 3.65253559178012e-05 0.532722316061131 7.52540821611539 19.5419693677261 -0.730297949340852 0.121008321292279
AT4G05170_at 1.05026241301321 1.14570500155430 1.06444512347768 0.838627704035939 1.66125545629540 1.46326986573790 2.09740224860584 1.99402457517838 1.96917090926877 2.40461626588140 1.42126595045721 1.57143126722064 1.70966476873936 1.82951209907328 1.21017259400956 1.21671352659790 0.860623582108392 0.711926886514646 2.16498571416538 0.207024534230086 0.207024534230086 0.212144496544211 0.207386885902487 0.212584958066185 0.208838998669812 0.213347193373435 0.210479492884722 0.216154915560307 0.217058506252404 0.207024534230086 0.20901826002951 0.216309181788491 0.213661508692358 0.212800421930446 0.207024534230086 0.20955758186451 0.2131018256151 0.214484214494208 4 4 - 2667988 2668715 2668320.182 2667988 2669362 - gene protein_coding_gene FALSE TRUE AT4G05170.1 DNA binding / transcription factor similar to B70, transcription factor [Arabidopsis thaliana] (TAIR:AT4G21340.1); similar to Os05g0501200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055968.1); similar to bHLH transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53363.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.589063075483131 -6.67969569080291 3.65835852931529e-05 0.533535007915342 7.52418682254325 3.16237644720999 -0.589063075483131 0.0573926164113146
AT2G03780_at 6.27552163624371 6.52400892063171 6.05905212572425 5.91299945543285 6.55494815052315 6.38552677998236 6.82534569156342 6.97186329399861 6.02319397893552 6.15197911557506 5.18168551018639 5.18087282502634 5.78376897879211 4.83469386354587 5.32932522228863 5.7556271934844 5.84466517808372 5.14241230166572 6.296895222607 0.214476392335301 0.204435131189275 0.205718774199137 0.215155055482272 0.203830922276853 0.211693036876747 0.209189141801079 0.202092365400312 0.206435029123273 0.202092365400312 0.205693048391594 0.202092365400312 0.207227624734988 0.208436311072 0.203162442205931 0.20910494100163 0.216973712843483 0.205215833240559 0.211330874239412 2 2|0 -|/ 1152724 1153497 1153177.1 1152464 1154288 - gene protein_coding_gene FALSE TRUE AT2G03780.1 translin family protein similar to Translin [Medicago truncatula] (GB:ABE92343.1); contains InterPro domain Translin; (InterPro:IPR002848) -0.598388989632713 -6.67641877256293 3.67438464337828e-05 0.535835512543855 7.52083479321 12.2081520016825 -0.598388989632713 0.0631704807000884
AT2G42740_at 4.31992083313108 4.8976993188541 2.67949684492564 2.89900059825330 4.1114580323974 4.86353215528614 4.49327494509613 4.59970788007070 4.73032494257719 4.82769187115497 3.9466578316367 4.59088136083049 4.18374293295743 4.26302202544114 5.2014456635554 4.13276188708889 4.10409203853433 3.52425501209327 5.59445523621317 0.265950497477185 0.2621454406984 0.261060801799153 0.258709813867694 0.258709813867694 0.268096046636199 0.258709813867694 0.264746750264875 0.273909598381802 0.258709813867694 0.258709813867694 0.268867353326974 0.258709813867694 0.259210665949209 0.267959777708869 0.258709813867694 0.267211422508182 0.267246884837408 0.258709813867694 2 0|2 /|+ 17799578 17799998 17799852.143 17798806 17800159 + gene protein_coding_gene FALSE TRUE AT2G42740.1 RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. Identical to 60S ribosomal protein L11-2 (L16) (RPL11D) [Arabidopsis Thaliana] (GB:P42794;GB:P42796;GB:Q42195;GB:Q8LD47;GB:Q9LXT1); Identical to 60S ribosomal protein L11-1 (L16A) (RPL11A) [Arabidopsis Thaliana] (GB:P42795;GB:Q9SJI2); similar to 60S ribosomal protein L11 (RPL11B) [Arabidopsis thaliana] (TAIR:AT3G58700.1); similar to 60S ribosomal protein L11 (RPL11D) [Arabidopsis thaliana] (TAIR:AT5G45775.2); similar to RPL16B (ribosomal protein L16B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G18730.1); similar to ribosomal protein RL5 [Cicer arietinum] (GB:CAD56220.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132); contains InterPro domain Mitochondrial ribosomal protein L5; (InterPro:IPR003236) -0.873372754601809 -6.67429692987983 3.68480187693865e-05 0.537317809695193 7.51866338022926 8.75510200633463 -0.873372754601809 0.169465791479018
AT1G76920_at 8.52536712771182 8.6669226576526 8.8938918391431 8.9513760299237 9.35486333090264 9.22195314684344 8.39345913372239 8.70399126030897 8.37768515050636 7.55723136534198 8.93409206524331 8.70515179192794 8.76235806371618 8.67837032490538 8.5949386720883 8.94686114169913 8.70869475313078 8.76355435611383 8.3516418284423 0.137746682303636 0.132594691893743 0.136996198009534 0.137442789808853 0.135558296609628 0.140636543614908 0.136767597684629 0.134477490212575 0.162173183469359 0.162321413779995 0.143235308571399 0.135841803372922 0.138466323074347 0.143154978384916 0.134583763068749 0.132594691893743 0.142144234660463 0.138052197268451 0.141099703895337 1 1 + 28897741 28898263 28897976.182 28896956 28898570 + gene protein_coding_gene FALSE TRUE AT1G76920.1 F-box family protein (FBX3) similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G61590.1); similar to H0701F11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86135.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.599659619930249 6.6714709412964 3.69872532843286e-05 0.539311140138796 7.51577022951329 17.2676141128761 0.599659619930249 0.0641558520552859
AT2G41950_at 7.19855888201665 7.80570015422679 6.21796356100555 6.40652955676203 6.62876957745027 6.26769455275216 7.70878741928194 7.68277594310845 7.68478180601496 7.41453686835802 7.31799119903022 7.77923029668647 6.71867840266147 7.20486918260355 7.9001817734325 7.21002549826602 6.60211484685622 7.40217745928537 7.50881216549237 0.208864921103953 0.201982971707049 0.220451392254688 0.216217954770822 0.212757960273956 0.216943135782286 0.210282660630249 0.202802753502099 0.214129403677618 0.207317574089066 0.205561765452997 0.201580144997226 0.210179950343741 0.206470988458168 0.213106493194524 0.201580144997226 0.228356686061238 0.210896327602788 0.202135266285889 2 2|0 +|/ 17520421 17521076 17520806.9 17520157 17521245 + gene protein_coding_gene FALSE TRUE AT2G41950.1 similar to Os03g0226700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049441.1); similar to Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB] (GB:YP_847674.1); contains domain Hypothetical protein MTH1020 (SSF75569) -0.743925659300838 -6.66494594475106 3.73108947618437e-05 0.543992845627682 7.50908517655838 14.3910735536461 -0.743925659300838 0.126605712166210
AT3G07770_at 7.9086151418544 8.06814528443602 8.12162586462763 7.7153409152845 7.67231624291257 7.14805686622545 8.26555934252823 8.09081214578681 7.13994831211953 7.42313780307842 5.6913035612154 6.16666962130105 5.92340336085763 5.8992362166961 5.81674133857239 6.91240256090577 6.9284700698172 5.82331021657451 7.00050153400286 0.204638285430924 0.204713027398472 0.198703502225884 0.203457367843733 0.211411827217829 0.205522259914200 0.206011173065312 0.207630440477684 0.208217819470061 0.19730161055811 0.205816778215067 0.206147752851277 0.205080488275788 0.20779743010426 0.198125489258594 0.199206117546384 0.203295794596377 0.202968058784933 0.19730161055811 3 3|0 +|/ 2483232 2483898 2483616 2479554 2484200 + gene protein_coding_gene FALSE TRUE AT3G07770.1 ATP binding similar to CR88 (EMBRYO DEFECTIVE 1956), ATP binding [Arabidopsis thaliana] (TAIR:AT2G04030.1); similar to heat shock protein 90C [Chlamydomonas reinhardtii] (GB:AAU10511.1); similar to heat-shock protein [Secale cereale] (GB:CAA82945.1); similar to Hsp90 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22030.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -0.730809218939962 -6.66425707985483 3.73452394037041e-05 0.544456245266601 7.50837900790043 14.540336309445 -0.730809218939962 0.121865605808719
AT3G27180_at 5.64242557544206 5.13704743960926 5.22865166978819 4.64761576024069 5.07791890544101 5.03651119913031 6.92231655742903 6.31757268054244 4.38851386539164 4.71629128832994 3.65716391317029 3.54894615401826 3.59870198959765 3.13933529159501 3.92622087489621 3.69129442933335 4.16958998001986 3.58945548035862 4.10266623428269 0.28781286176968 0.281080383315440 0.281080383315440 0.288698147760216 0.293099573600222 0.284450368049160 0.289887393115868 0.3001865770053 0.281080383315440 0.288799687432848 0.284117142332634 0.288294281639352 0.292330567702142 0.284318393195520 0.309385860240917 0.288702332482649 0.292456334617102 0.293957168098969 0.283592104444819 3 3|0 -|/ 10028808 10029271 10029082.333 10028074 10031306 - gene protein_coding_gene FALSE TRUE AT3G27180.1 similar to Os01g0920300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045219.1); similar to putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] (GB:YP_008997.1); contains domain RNA M5U METHYLTRANSFERASE FAMILY (PTHR11061); contains domain no description (G3D.3.40.50.150); contains domain gb def: Emb|CAB12631.1 (PTHR11061:SF5); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) -0.87228406407504 -6.66279468444575 3.74182622511594e-05 0.545483427097402 7.50687962105558 9.53504696184875 -0.87228406407504 0.169597061888425
AT1G47270_at 7.81495947338005 7.90577333071202 6.66490275047297 6.62804712705112 7.96119642904115 7.87242891079595 6.9604403199885 7.42821333273115 7.6925813101676 7.49800404296664 7.03044874368374 6.74534479781665 6.8308332572904 6.79670948303303 6.21117475989447 6.860645106999 6.25474903689513 6.38981770436709 7.81958641206738 0.182348389918023 0.181227901226125 0.181227901226125 0.181227901226125 0.181227901226125 0.190409550742787 0.184191019748916 0.187341705389553 0.186605567819482 0.181227901226125 0.183343349604120 0.182815577949499 0.183069663802627 0.186741643704019 0.181227901226125 0.181227901226125 0.18482654074949 0.183191131967025 0.182536663851532 1 1 + 17330444 17330979 17330717.455 17328996 17331168 + gene protein_coding_gene FALSE TRUE AT1G47270.1 AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP2 (TUBBY LIKE PROTEIN 2), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G18280.2); similar to tubby-like protein [Cicer arietinum] (GB:CAB88665.1); similar to Os02g0705300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047866.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) -0.6378973518412 -6.66231223071415 3.74423865311624e-05 0.545797668464754 7.50638488689776 14.5595065174289 -0.6378973518412 0.084122503525694
AT3G18990_at 6.87314900164255 7.24441731361902 6.90585765755472 7.06986976047621 8.0139313174783 7.38904864531206 5.89400609550563 5.8925226849718 5.3160155512629 5.29437110245103 5.91266870685523 5.88546598644992 5.92206846104303 5.73849782201036 6.07413268213676 5.95395013217654 6.2247234517044 5.56070228050677 5.22208760945526 0.211123637355676 0.203926808711346 0.203549923073842 0.204980235741907 0.203338449870612 0.213291228814967 0.203628502626865 0.204439346500591 0.213739107249085 0.200870183460636 0.204386619430205 0.199057453080466 0.199057453080466 0.20376544153632 0.205785309538474 0.200886861925077 0.203626716046962 0.203772985519314 0.199057453080466 3 3|0 -|/ 6549089 6549941 6549485.3 6548875 6551859 - gene protein_coding_gene FALSE TRUE AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1) Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3 similar to RTV1 (RELATED TO VERNALIZATION1 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G49480.1); similar to reduced vernalization response 1 [Brassica rapa] (GB:AAR92199.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.750093920287275 6.66162533968614 3.74767621256265e-05 0.546261284743131 7.50568044600146 12.5036091152784 0.750093920287275 0.128948450056368
AT3G17120_at 3.97150160506244 3.46824645058488 1.87332077332517 1.55173379173586 1.85968748390029 1.50295449506288 4.3054857989512 4.07114650827158 2.84270541716755 3.61816746533731 4.39038854358117 5.48370602146589 4.0519743190905 4.1325417668549 5.21196806920595 4.42657684676983 3.26253075923877 3.99304577157203 4.34072766389868 0.271346127893144 0.269549809703036 0.286463126641346 0.282182280409339 0.280387973623463 0.276248730521087 0.274746116405875 0.271236291479372 0.280096467488509 0.269549809703036 0.276232257512551 0.272403832789307 0.273543759713187 0.276057870455074 0.272928729501619 0.269549809703036 0.269549809703036 0.270741092319704 0.275529950429463 3 3|0 +|/ 5842496 5843086 5842827.7 5841102 5843491 + gene protein_coding_gene FALSE TRUE AT3G17120.1|AT3G17120.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01960.1); similar to hypothetical protein MtrDRAFT_AC153352g19v1 [Medicago truncatula] (GB:ABE87668.1) -0.744306478978469 -6.65769473312496 3.7674121972146e-05 0.549100327744028 7.50164792927543 6.8103221272069 -0.744306478978469 0.127034060349665
AT4G39955_at 4.98450438395638 5.2014954519552 5.50462781187473 5.22441298174318 5.51189796723885 5.7488559540975 4.12946205281225 3.78838683888123 3.25919693204663 3.60490520471605 3.6813528466104 3.40868840648021 3.36524830725956 3.99116208141890 3.43601034842236 3.83093743936325 4.4218538920608 3.80566350918131 3.31816146013177 0.287852525869597 0.290416821988629 0.292641916176646 0.290991162011276 0.290702273496876 0.297979139408514 0.297779648159111 0.286133413994043 0.311513088662065 0.291278639274801 0.286133413994043 0.296989067099524 0.288495454350081 0.300528575042955 0.296102600313591 0.286133413994043 0.295158008361495 0.295664334969954 0.290960729656071 4 4|0 +|/ 18530956 18532044 18531306.9 18530537 18532253 + gene protein_coding_gene FALSE TRUE AT4G39955.1 hydrolase, alpha/beta fold family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT5G09430.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96342.1); similar to putative hydrolase [Oryza sativa (japonica cultivar-group)] (GB:AAR06364.1); similar to Os03g0388800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050266.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.660006617527709 6.6508835205239 3.80187632268997e-05 0.554085455268836 7.49465413379332 8.58005666506045 0.660006617527709 0.0944832289554525
AT1G70920_at 2.40206603856851 2.4726969761471 3.4898519465632 3.54268006867016 3.07378106766203 3.04390055332333 2.7896915804472 2.87737190792522 1.87256189884841 2.55591695166837 2.60491473465253 2.43992398136839 2.57559095114095 2.60034638301218 2.34048104522157 2.99448049211729 3.25550012438501 2.50388850373123 2.2448971865863 0.154413497530381 0.151971684758416 0.158766208542640 0.156152692673532 0.151976398413627 0.157050157051056 0.155765515917730 0.151916986328887 0.160093066006031 0.156331135384814 0.156384802597946 0.154058658230303 0.152482423613657 0.154563741178155 0.154904303807586 0.152061559666078 0.154648685210706 0.152770983967266 0.160631500099233 1 1 + 26740009 26742044 26741187 26739618 26742325 + gene protein_coding_gene FALSE TRUE AT1G70920.1 homeobox-leucine zipper protein, putative / HD-ZIP transcription factor, putative Identical to Homeobox-leucine zipper protein ATHB-X (Homeodomain transcription factor ATHB-X) (HD-ZIP protein ATHB-X) (ATHB-X) [Arabidopsis Thaliana] (GB:Q8GXM7); similar to homeobox-leucine zipper protein 17 (HB-17) / HD-ZIP transcription factor 17 [Arabidopsis thaliana] (TAIR:AT2G01430.1); similar to homeobox protein (GB:AAA56900.1); similar to Os01g0643600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043693.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.546014440600978 6.64774427517942 3.81787426922264e-05 0.556378817253816 7.49142817994265 5.40592974540735 0.546014440600978 0.0221349192167049
AT2G07340_at 6.03112622438895 5.93823123479716 5.38715106020082 5.19690547478809 5.59402345878351 5.49607092813254 6.00620638405716 6.00237161296765 6.37924061403087 6.23384593711512 5.98108735826813 6.42762820475535 5.34960746041184 5.8135258408686 6.32015614646692 5.43439711317774 5.22193476909178 5.59172567500678 6.33639030685 0.131458114080044 0.126017341084002 0.125911778964842 0.127338523124055 0.122327206888383 0.129017826897972 0.123753061333908 0.125703746957606 0.131591270059177 0.128888510070873 0.122793364596930 0.125149507676914 0.126328912727739 0.12383152409351 0.124785225011351 0.126783869535978 0.129438120875381 0.123705077340550 0.122836533830069 2 0|2 /|+ 3045789 3046578 3046270.438 3045556 3046741 + gene protein_coding_gene FALSE TRUE AT2G07340.1|AT2G07340.2 prefoldin-related KE2 family protein similar to prefoldin-related KE2-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19818.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) -0.562465299284629 -6.64472687485083 3.83331931378909e-05 0.558591290405346 7.48832591497347 11.7485108507668 -0.562465299284629 0.0403749050015363
AT2G20740_at 8.75287215599892 8.94472707219447 9.10900932313004 9.01070220654304 9.6608948101966 9.26417695685762 8.24124723382016 8.25069227918979 7.93348531114421 8.05824996819605 8.61064623982527 8.23773054949362 8.74596039852866 8.64606022083262 8.50469206029058 8.50926664748825 8.5895640921974 8.4591844129353 8.0246313217049 0.101236700424281 0.102676339770300 0.103207010745351 0.101936814487141 0.106546500544467 0.110620965165617 0.101111552670475 0.103824216004788 0.111481072106044 0.0998468959274021 0.102267446777194 0.0989220704592912 0.101228268371013 0.102690770998237 0.105129507049099 0.10176291684287 0.103032134258886 0.104242532615647 0.104585608396010 2 2|0 +|/ 8942872 8944314 8943508.15 8942688 8944593 + gene protein_coding_gene FALSE TRUE AT2G20740.1|AT2G20740.2|AT2G20740.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20230.1); similar to Os04g0679900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054283.1); similar to H0801D08.19 [Oryza sativa (indica cultivar-group)] (GB:CAJ86261.1) 0.623121841449116 6.63821367066575 3.86688699105799e-05 0.56344410346706 7.48162443943014 17.1759620604317 0.623121841449116 0.078152310458484
AT4G17090_at 11.0880585997782 11.1464966188701 10.4577840328068 10.5336655269581 11.0675294625751 10.6343148704595 11.4395408268066 11.420439823352 10.2149648291621 10.8157323055862 9.87329923565493 9.59729756618787 10.2586025740541 9.97726365839523 9.20181369391154 10.5882866901677 10.0787643810166 9.83674812769851 10.6705480947455 0.0969738074394964 0.0961316403509928 0.0957795130858549 0.0965536568853058 0.0956580174735974 0.102746054956226 0.0966373201280699 0.0980299592242433 0.107319692659751 0.0942569607690453 0.0965703389072173 0.0977082441944079 0.0966063172329552 0.0988182001804215 0.102007212830148 0.0951120855524866 0.0985327168509674 0.101620889339495 0.0946285384256115 4 4 - 9605523 9605853 9605657.364 9604978 9607350 - gene protein_coding_gene FALSE TRUE AT4G17090.1 CT-BMY (BETA-AMYLASE 8); beta-amylase Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). similar to BMY7/TR-BAMY (beta-amylase 7), beta-amylase [Arabidopsis thaliana] (TAIR:AT3G23920.1); similar to beta-amylase PCT-BMYI [Solanum tuberosum] (GB:AAK84008.1); similar to Os10g0565200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065418.1); similar to beta-amylase [Glycine max] (GB:CAI39244.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.620441373140329 -6.63764099883763 3.86985345468980e-05 0.563837648348303 7.48103488121894 21.2202743372260 -0.620441373140329 0.0768512233797482
AT4G38560_at 3.32839429826864 3.57759777479224 5.17784105654188 5.35870062478233 2.98770612121823 3.30877100457433 1.44462637201149 1.7360125756096 2.93987068193025 1.74896962008845 1.94343938276903 1.77631693117641 1.55121070168699 2.03336546125865 2.09457280330001 1.75488115299304 2.08964435704166 2.06387406835439 2.19326694700567 0.251598966876854 0.246078968466620 0.282296636747940 0.278568180151054 0.245566316558432 0.248653616134315 0.241918773245705 0.245036924539806 0.241918773245705 0.246081861465801 0.244670711196033 0.241918773245705 0.244766730093775 0.244841538960025 0.241918773245705 0.241918773245705 0.24974835746331 0.241918773245705 0.242163072003561 4 4 + 18030664 18031116 18030831.091 18029190 18031327 + gene protein_coding_gene FALSE TRUE AT4G38560.1|AT4G38560.2 similar to pEARLI4 [Arabidopsis thaliana] (TAIR:AT2G20960.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.652987152128218 6.6371014243649 3.87265070476184e-05 0.564206481176753 7.48047934709 5.4686806569735 0.652987152128218 0.0920288260678889
AT1G74440_at 7.55277095742971 7.77899734741515 7.20603349446454 7.0359232623453 6.81795953573023 6.02955402134822 3.07931872256398 3.38003119486239 5.71057506546185 3.35984555166959 4.9524085017137 5.65397789739062 4.32090154353726 5.63137287177436 4.577591533928 4.32117098161234 3.62099196202803 5.05871273283097 4.28171468853967 0.255432803630200 0.247432228188159 0.251340352885221 0.252810005020916 0.249701108524472 0.265889229752718 0.250138992810282 0.258803696112028 0.265933696128416 0.246734791330217 0.248838556710924 0.248047269837012 0.255352919389392 0.260940939898559 0.246734791330217 0.252119563080277 0.260764002970482 0.255942603057695 0.250608323858577 1 1 - 27982972 27983934 27983545.818 27980163 27984065 - gene protein_coding_gene FALSE TRUE AT1G74440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18720.1); similar to YGL010w-like protein [Picea mariana] (GB:AAC32136.1); contains InterPro domain Protein of unknown function DUF962; (InterPro:IPR009305) 0.820508628724568 6.63629982193648 3.87681035686501e-05 0.564773732788095 7.47965394651185 10.7189999528494 0.820508628724568 0.154021287101416
AT1G60730_at 4.66197499074208 5.06018855285866 6.47425557046852 6.29950412637838 5.59726494301998 4.89306488056155 3.67462040181353 3.74805094629234 3.99765405928365 3.6389163819467 3.53977715053444 3.79156463915535 3.77671491252725 3.64031393788785 3.87627538270425 3.96895866843471 4.22854663487517 3.50911047832862 3.58938046869248 0.277938338427883 0.272696726408145 0.287760044760719 0.291080802024939 0.274849887201948 0.286009202140257 0.274537201720311 0.269350349979845 0.278415465111266 0.273474573553001 0.26876737034862 0.278761634641697 0.26876737034862 0.26876737034862 0.26876737034862 0.26876737034862 0.26876737034862 0.270986290323863 0.27540425425574 1 1|0 -|/ 22362453 22363530 22363089 22361700 22363823 - gene protein_coding_gene FALSE TRUE AT1G60730.1|AT1G60730.2 aldo/keto reductase family protein similar to ATB2, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G60710.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.789618873047735 6.63409093470626 3.88829745212875e-05 0.566408289851594 7.477378935902 8.81781123261533 0.789618873047735 0.143791856520164
AT4G34480_at 6.55994722825316 7.10634128882186 7.80174261950726 7.87674246062481 7.03226879450528 7.03958680615447 5.42534078872717 6.20723593990225 7.35780392245826 6.16696207959655 7.37832795436211 6.58633130202026 7.46915994548671 7.5679793504507 7.03741647485539 7.17219517147874 6.68655936535216 7.6258776489614 6.25281765712315 0.183415277603053 0.171727865015779 0.178879661078122 0.186401947206957 0.171860537589304 0.185137154488119 0.194342657663697 0.177726773420988 0.176529882357587 0.190774362744986 0.172922796195154 0.171929753549921 0.171727865015779 0.180114052630772 0.173304990781089 0.176269937478016 0.190153601597261 0.184361785649506 0.182334846168497 4 4 - 16481997 16483327 16482711 16481884 16483999 - gene protein_coding_gene FALSE TRUE AT4G34480.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana] (GB:Q9M069;GB:O65675;GB:P80829); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G16230.1); similar to beta-1,3-glucanase-like protein [Olea europaea] (GB:AAK58515.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.855410937000065 6.63011982379656 3.9090406712091e-05 0.569390864168317 7.47328693561851 13.7726551348188 0.855410937000065 0.165589444317624
AT3G54500_at 8.57045689411442 8.36048524445672 8.64347066956182 8.42628380719714 8.47085100727297 8.18425217045137 10.2132410721415 9.93047505340931 9.83254629646064 10.0565410894995 9.77420271256343 9.80778946094997 9.72666506124589 9.69860300401312 9.474818260055 10.5456012595761 9.74632890096563 9.26060987829677 10.7082018172845 0.13690873035013 0.134431810313520 0.137653947253528 0.136102038947269 0.134368029934146 0.141383250190919 0.136419347461636 0.134299811060655 0.137589135148514 0.130792231499502 0.131379055012396 0.129632370570770 0.130948146088520 0.131974607637296 0.131438972670783 0.134824355991628 0.148525912525353 0.134946033122498 0.130616161196212 3 3 - 20186789 20187597 20187125.091 20186382 20189960 - gene protein_coding_gene FALSE TRUE AT3G54500.1|AT3G54500.2 similar to dentin sialophosphoprotein-related [Arabidopsis thaliana] (TAIR:AT5G64170.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28297.1) -0.64110961814149 -6.62832035272224 3.91847928820376e-05 0.570726508326877 7.47143183242868 18.8266513489706 -0.64110961814149 0.0871057790072545
AT4G19370_at 3.45653479955334 3.64887773876688 5.73594259100665 5.36993415411425 3.55253584054582 2.84703435202302 2.25394580671149 2.18735184797504 1.64614700079897 1.98291158934518 1.79004818150270 1.38322579437666 2.50190929706505 2.20659855544245 1.31172251951719 2.47887733964382 1.69416322450260 2.17549992704339 1.96854225426933 0.241595775389263 0.240021369624975 0.249455792573928 0.259029633216821 0.241285950918745 0.245714052955699 0.239496447058438 0.238070750753282 0.242695585556782 0.240268291448446 0.242293951399628 0.242064400566142 0.238070750753282 0.238070750753282 0.239483470990266 0.239744159409466 0.247825647200393 0.243486127724889 0.238070750753282 4 4|0 -|/ 10566452 10567468 10567047.7 10566161 10567849 - gene protein_coding_gene FALSE TRUE AT4G19370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31720.1); similar to Os06g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056606.1); similar to Os02g0703300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047854.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.783286421459825 6.62551504981207 3.93324247159415e-05 0.572837433562972 7.46853874072677 5.53583091784934 0.783286421459825 0.141981315796731
AT2G44270_at 4.9412578489538 5.38719321145418 4.67631238482083 4.68602362058786 4.73205681719953 5.08562135538823 5.41395080578248 5.40193483326224 5.55681778625434 5.66869566320875 4.65911505220955 4.62977832284983 4.9957041939224 4.73906790993935 4.39767788040127 4.82435770666589 5.52627632291836 4.61199833927166 5.69597768104216 0.262630867645334 0.250341235107297 0.260395361653527 0.251659959569985 0.250341235107297 0.262954713091997 0.264415535561620 0.252209752301333 0.258855392330927 0.263932281671711 0.25641228090031 0.256533502928816 0.254815342406647 0.266228405494403 0.27337625021681 0.259209388098974 0.280603500905965 0.265310170884068 0.256424242730605 2 2|0 -|/ 18305270 18306108 18305650 18304954 18307270 - gene protein_coding_gene FALSE TRUE AT2G44270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76170.1); similar to MGC107918 protein [Xenopus tropicalis] (GB:NP_001015743.1); similar to Os02g0762300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048203.1); contains InterPro domain PP-loop ATPase, YdaO-related; (InterPro:IPR012089); contains InterPro domain Protein of unknown function UPF0021; (InterPro:IPR000541); contains InterPro domain PP-loop; (InterPro:IPR011063) -0.666790353921759 -6.62360529730037 3.94332683450433e-05 0.574266686908865 7.46656848518534 10.2597908644432 -0.666790353921759 0.0985203897270921
AT1G10060_at 6.03925129532576 6.28085681022672 3.78963649331438 3.65525743731751 5.06525824231662 4.80488472039482 3.61698638716102 3.96701399660767 4.77111082198746 2.39846568376387 6.04590123600927 7.01942185831877 5.27183111252445 5.25356902055301 6.66018179424424 5.84964878517582 4.1033851772815 5.50442399689115 4.155834370335 0.267893980110257 0.262660371225515 0.283101606399446 0.28461392610154 0.259950549872008 0.263355065744792 0.271402019189242 0.276210065446024 0.263871038265533 0.262078880917972 0.265527841646840 0.262498356242375 0.259950549872008 0.272200319710271 0.271437750377273 0.259950549872008 0.282091773213772 0.267554063293763 0.265872421932424 1 1|0 +|/ 3285474 3286318 3285776 3284241 3287109 + gene protein_coding_gene FALSE TRUE AT1G10060.1|AT1G10060.2 ATBCAT-1; branched-chain-amino-acid transaminase/ catalytic|ATBCAT-1; catalytic encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 1, mitochondrial precursor (EC 2.6.1.42) (Atbcat-1) (BCAT1) [Arabidopsis Thaliana] (GB:Q93Y32;GB:O80597); similar to ATBCAT-2, catalytic [Arabidopsis thaliana] (TAIR:AT1G10070.3); similar to branched-chain amino acid aminotransferase [Capsicum annuum] (GB:AAK57535.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786)|Identical to Branched-chain-amino-acid aminotransferase 1, mitochondrial precursor (EC 2.6.1.42) (Atbcat-1) (BCAT1) [Arabidopsis Thaliana] (GB:Q93Y32;GB:O80597); similar to ATBCAT-2, catalytic [Arabidopsis thaliana] (TAIR:AT1G10070.2); similar to branched-chain amino acid aminotransferase [Capsicum annuum] (GB:AAK57535.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786) 0.645570257467436 6.6224631895543 3.94937092328531e-05 0.575107393848807 7.46538990791955 9.39673433849317 0.645570257467436 0.089378110651896
AT3G56300_at 1.77235639011541 1.38086070364984 1.01144645744863 1.09064283267317 0.95664084961689 0.805576209753282 2.33873893999743 2.14376760809706 2.28096447863464 2.45132469119419 2.20627194526363 2.45791830710813 2.15713627304284 1.80946460271625 2.27294576837699 2.15048021663672 1.24172312242964 2.4736216635237 2.49194190820602 0.206906126166412 0.211801021096529 0.206906126166412 0.209308148537248 0.209575237490438 0.212127269231090 0.214700709577491 0.211836246866384 0.206906126166412 0.206906126166412 0.208930159980561 0.212235366648548 0.208044393532463 0.206906126166412 0.207155157423552 0.206906126166412 0.209205189989552 0.208472581503224 0.209159788676305 3 3|0 +|/ 20892603 20893285 20893060.9 20891148 20893345 + gene protein_coding_gene FALSE TRUE AT3G56300.1 tRNA synthetase class I (C) family protein similar to tRNA synthetase class I (C) family protein [Arabidopsis thaliana] (TAIR:AT5G38830.1); similar to Os09g0556500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063899.1); similar to Cysteinyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93925.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308) -0.627368055858158 -6.61589509635647 3.98432289204575e-05 0.580157256310781 7.45860792255871 3.68963988061839 -0.627368055858158 0.0812390339807274
AT2G39250_at 7.27060610333862 6.77654555325264 5.09702927403676 5.00455494072387 5.4952085477985 4.25254890338729 7.94850210786595 7.4531624479167 5.48697443593305 6.99131425169761 6.7732007099834 6.97096734352247 6.44777665378627 6.09396674698777 6.25828673346535 5.65781382748083 6.55317580216937 6.16865273037288 6.18269093907391 0.254361554794818 0.266919414690616 0.276486300139013 0.255864383107003 0.262798140440091 0.27940446213446 0.267695187819269 0.265083673792671 0.272087480557870 0.258776221041080 0.260801350358227 0.254361554794818 0.254361554794818 0.262074252414927 0.26248048851671 0.25787890395274 0.279872934270012 0.259624165876992 0.259270087764433 2 2|0 -|/ 16396912 16397778 16397341.143 16395964 16398151 - gene protein_coding_gene FALSE TRUE AT2G39250.1 SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. similar to SMZ (SCHLAFMUTZE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G54990.1); similar to PHAP2B protein [Petunia x hybrida] (GB:AAD39440.1); similar to Floral homeotic protein APETALA2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99568.1); similar to transcription factor AP2D23-like [Oryza sativa (japonica cultivar-group)] (GB:AAW78371.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -1.12735755518535 -6.61447953109687 3.99189913279803e-05 0.581220513735393 7.4571453299397 12.455173040143 -1.12735755518535 0.24730545042211
AT3G49790_at 4.954255122624 5.28517233096278 4.47390747195487 4.90156638965731 6.67585448752369 6.63806897627550 4.40713571001459 4.14585746315183 3.45019403614627 3.63564563815103 4.02527773903673 3.31467250185146 4.60202513956900 3.95961437170836 3.18090060597726 3.70893171097189 4.79614682948927 3.42283951095414 3.39717507352469 0.266168183197852 0.272925409816259 0.272281939366362 0.276914775505498 0.283407512471128 0.279460362125847 0.268392454920710 0.272653876264584 0.270453642403964 0.272844110725455 0.266467733782347 0.266168183197852 0.266168183197852 0.271784049157016 0.273008200421153 0.266707943591545 0.281551478336376 0.280492088724828 0.2774078349828 3 3 - 18479325 18479847 18479649.727 18479036 18480748 - gene protein_coding_gene FALSE TRUE AT3G49790.1 similar to ATPP2-A10 (Phloem protein 2-A10) [Arabidopsis thaliana] (TAIR:AT1G10150.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85053.1); similar to Os03g0769900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87321.1); contains domain FAMILY NOT NAMED (PTHR21477); contains domain gb def: Hypothetical protein T16K5.140 (At3g49790) (PTHR21477:SF1) 0.678103488292652 6.60115678170674 4.0639650048525e-05 0.591672665056476 7.44336382293736 8.87054689425495 0.678103488292652 0.104134113019143
AT2G37600_at 5.92318836601562 6.35303547237159 5.42054480396411 5.67323865557574 5.20835219570322 5.08952169003594 6.48025976732585 6.53248485131472 4.93238658684867 5.68246998506314 5.20511271287263 5.619372356545 4.99133524789147 4.94519432697175 6.01245143562678 4.88920870298091 5.16998602744736 4.19709087841114 5.70619779721542 0.202099466852729 0.195938523047131 0.195221365113584 0.206414518929667 0.195757230106285 0.198928188040246 0.205050817699591 0.21400783824834 0.203764417768181 0.208155917455153 0.198345914349702 0.1935882662981 0.199009507066013 0.204641407894382 0.201928212857058 0.194579231671668 0.198420868731985 0.216210191404833 0.199237993044598 2 2|0 -|/ 15781743 15782222 15781955.6 15781323 15782452 - gene protein_coding_gene FALSE TRUE AT2G37600.1|AT2G37600.2 60S ribosomal protein L36 (RPL36A) Identical to 60S ribosomal protein L36-1 (RPL36A) [Arabidopsis Thaliana] (GB:O80929); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to ribosomal protein L36 [Triticum aestivum] (GB:AAW50980.1); contains InterPro domain Ribosomal protein L36E; (InterPro:IPR000509) -0.642980136609778 -6.6007651290145 4.0661045310738e-05 0.591943497633723 7.44295824184922 11.1196134340229 -0.642980136609778 0.0891644512750966
AT4G21180_at 6.9920533852455 6.98946055371903 7.02894776506168 6.54203054126452 6.44008120460333 6.11118516889759 7.4174582362411 7.24620453518901 6.880981100313 6.63569396885263 5.74188549744808 6.64284199593372 5.80456088775664 5.45921574883285 6.1949848383784 6.25607323414617 5.91496868278068 5.51552150034925 6.5093400758042 0.185839414207818 0.19024780006462 0.184094853374164 0.18556927569994 0.192946516449592 0.192852670774542 0.189377140540278 0.182260874279326 0.192296727917639 0.192315525661679 0.189709365447617 0.184396464651207 0.191563630895243 0.185524130477873 0.182870023045929 0.181623263055182 0.190167194522791 0.188138807326220 0.181623263055182 4 4 + 11291623 11291954 11291796.636 11288939 11292399 + gene protein_coding_gene FALSE TRUE AT4G21180.1 DNAJ heat shock N-terminal domain-containing protein / sec63 domain-containing protein similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G79940.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL53183.1); similar to Os04g0307200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052421.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Sec63; (InterPro:IPR004179); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.682407420547634 -6.60014688112944 4.06948436214844e-05 0.592394838597949 7.44231795570652 13.1542251387076 -0.682407420547634 0.105916740682041
AT3G55005_at 5.24824540100108 4.70444013801666 4.97851406308883 4.79848875741774 6.16398734711033 5.48648359797881 4.95746178089311 4.3990814423856 4.74734965079302 4.68823546444762 6.29938129675776 6.36862225227559 5.85129914310917 6.13307957184682 6.57517052420833 6.07261387382208 5.71609257588791 5.79152530975575 5.04737469354649 0.210403103937236 0.220146622325808 0.216290534867388 0.210865104150329 0.218125396130729 0.220907493754480 0.211896250252108 0.218666629720052 0.226407504303672 0.216977364486381 0.21454608956982 0.213739311269170 0.213519922036058 0.212115802055058 0.214204569849553 0.212177339076036 0.217726703133020 0.225687362688092 0.213450285694336 3 3|0 +|/ 20395597 20396966 20396502 20394933 20397355 + gene protein_coding_gene FALSE TRUE AT3G55005.1 TON1B (TONNEAU 1B) involved in cortical microtubule organization. mutants exhibit abnormal cell growth. can functionally complement TON1A. encodes a novel protein, similar to human sequence similar to FGFR1 oncogene partner, GB accession AAH11902. interacts with centrin in similar to TON1A (TONNEAU 1) [Arabidopsis thaliana] (TAIR:AT3G55000.1); similar to unknown [Solanum tuberosum] (GB:ABA81867.1); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.901440524843515 6.59827217501011 4.07975140600095e-05 0.593848614657498 7.44037603823642 10.5564009850133 0.901440524843515 0.181413230258909
AT4G20860_at 5.76749644564177 6.61555497783473 6.30140477465826 6.43513658950326 7.2836026892267 6.90769003197704 3.87904148666278 4.12861056360947 3.30246165245426 4.30417680142815 3.41627949527410 3.22306583979962 3.95124162159044 3.59238554307326 3.32908606820616 3.53742712141271 5.46463227742368 3.88694416406987 3.55015608483246 0.289571048351771 0.291230199298955 0.298862319612615 0.296967022481192 0.294866374936721 0.301726004215847 0.282946580222247 0.288277480185226 0.282946580222247 0.292082695035844 0.282946580222247 0.285133347773472 0.282946580222247 0.283686745566141 0.290472880213723 0.282946580222247 0.282946580222247 0.283414490864579 0.290468256609767 4 4 + 11173763 11174173 11173943.182 11172633 11174478 + gene protein_coding_gene FALSE TRUE AT4G20860.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44360.1); similar to FAD-linked oxidoreductase 1 [Glycine max] (GB:ABC41950.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951); contains InterPro domain Oxygen oxidoreductase covalent FAD-binding site; (InterPro:IPR006093) 0.857741953177701 6.59368867972256 4.10497053590356e-05 0.597478461500764 7.43562577787034 9.67434933451985 0.857741953177701 0.167843623024209
AT2G34960_at 5.537316793396 6.72933396584985 3.94343087123104 4.52192990717521 4.03441737560426 4.55128885362115 4.77504954320112 4.75791385325368 3.59285587816872 3.66764091816711 1.91358510680562 1.76181331582403 1.99192390302658 2.55716498701361 1.55843690031154 2.99664824632385 3.26908982735162 2.04768313451331 2.67912148961133 0.324930432470687 0.308013494512249 0.306927118227915 0.290075792881013 0.292710926007134 0.29206335677805 0.296214219711066 0.309085828265757 0.300261443256018 0.292865646888418 0.295337378225776 0.287292543612658 0.301992297456268 0.301433344399934 0.298670550927665 0.287725596705674 0.314042111416457 0.305281123863455 0.29593920095564 2 2 - 14751299 14751819 14751522.909 14751116 14753040 - gene protein_coding_gene FALSE TRUE AT2G34960.1 CAT5 (CATIONIC AMINO ACID TRANSPORTER 5); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At2g34960) similar to AAT1 (CATIONIC AMINO ACID TRANSPORTER 1), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT4G21120.1); similar to CAT8 (CATIONIC AMINO ACID TRANSPORTER 8), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT1G17120.1); similar to Os01g0209800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042365.1); similar to Amino acid permease family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99390.1); similar to Os03g0641200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050746.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -1.11914985234335 -6.59033882023817 4.12350765331295e-05 0.600135303863167 7.43215184704738 7.64395978189753 -1.11914985234335 0.246140426407913
AT3G56880_at 9.32665498152979 9.329784545944 9.22413047288 9.3515079642072 10.0377672175836 9.91516565296786 9.0920349406921 9.30306733441435 9.33188632767994 9.03988570514701 10.3442885835032 10.1949085067611 9.8780161458764 10.2868635238247 9.84614835887323 9.34370759626126 9.40775935567402 9.75198914178591 8.98058404087644 0.110337487408072 0.108681339052302 0.111361243115493 0.108681339052302 0.111003360165878 0.117889179213928 0.110923375769772 0.108681339052302 0.140374599332165 0.113334110369916 0.108681339052302 0.108681339052302 0.112189622210886 0.108800986773231 0.109740739157965 0.108681339052302 0.118086613423792 0.117905746249233 0.110932081095771 3 3 + 21071261 21071709 21071532.727 21070894 21071944 + gene protein_coding_gene FALSE TRUE AT3G56880.1 VQ motif-containing protein similar to ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G41010.1); similar to VQ [Medicago truncatula] (GB:ABD32874.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.566757751633394 6.58816082620186 4.13560812982599e-05 0.601855051133577 7.42989219213301 18.9470952268462 0.566757751633394 0.0476452629313115
AT1G09020_at 2.47642258227053 2.35271160503358 2.10217330709718 2.01813657498354 1.82532089557577 2.14704816203838 1.42708672564805 1.93439542953628 1.82769004859253 1.97326768588845 3.61267040445500 3.3474474029267 3.03480711100419 3.95880671353362 3.15768894138342 3.59392959535771 2.96480102036295 2.07123056368929 1.68072747391538 0.21151885987049 0.212357165534925 0.213524627644706 0.217810286522303 0.206269228190027 0.223586952216358 0.214472522062972 0.209145989125952 0.222171201745301 0.211492995507900 0.216977091412697 0.209118158374131 0.216229464982700 0.211466053585057 0.218693536474198 0.212673709715226 0.217365176161462 0.207959005359821 0.22249744403506 1 1|0 -|/ 2900374 2901761 2901088.9 2899917 2904818 - gene protein_coding_gene FALSE TRUE AT1G09020.1 SNF4 (Sucrose NonFermenting 4) putative activator subunit of SNF1-related protein kinase similar to 5'-AMP-activated protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G27070.1); similar to protein kinase AKINbetagamma-2 [Zea mays] (GB:AAG31752.1); similar to CBS [Medicago truncatula] (GB:ABE84303.1); similar to AKIN betagamma [Medicago truncatula] (GB:AAO61673.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.682979982795965 6.57648567344461 4.20112484516239e-05 0.61134768746803 7.41776594928843 4.55786247121686 0.682979982795965 0.107131478709240
AT3G54100_at 5.80169155144326 5.51780821621089 5.77949845787556 5.82198563172178 5.2567276922126 5.32994005171892 4.04415977862084 3.63759333354389 3.90531989635079 3.87811962759148 4.19245509105043 4.23436029267203 4.18881433841877 4.19559129198842 4.1598123083169 4.12086964645014 4.7856354551293 4.31882188036492 3.6147043304274 0.214329254617338 0.209476452483625 0.211616673748198 0.21408851054072 0.217727595936375 0.209476452483625 0.215859450061090 0.214711077807246 0.24234547228034 0.215766713517985 0.213573476463309 0.215513918139869 0.222236721732777 0.218449100944316 0.209476452483625 0.213185997515818 0.228321631721534 0.211374163249502 0.211893230699147 3 3 - 20045494 20046096 20045846 20045049 20048931 - gene protein_coding_gene FALSE TRUE AT3G54100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37980.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01100.1); similar to Os09g0442900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063294.1); similar to Os05g0451900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055708.1); similar to putative axi 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD82651.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.635944245843234 6.57608707633715 4.20338117033645e-05 0.611633994095656 7.4173515543335 9.18563875058784 0.635944245843234 0.087053760416628
AT2G19180_at 6.26078880581367 6.58395610192732 6.2878769218075 6.57724518541731 7.55800514522097 7.53472887128274 5.69898560479388 5.97451749626822 5.29577971197975 4.67247102039194 5.3813847743102 5.38471079274264 5.61629286110602 5.49029726647299 4.97746539584557 5.71501918096565 5.59924288718464 5.76670214047971 5.24435023137987 0.265674019278989 0.259557610454914 0.268721057700918 0.268585897565660 0.260577986728613 0.267222854605743 0.272678140602142 0.256505461030071 0.279993726951626 0.260722625639445 0.258753059507161 0.261415115787625 0.256560456920191 0.266014096390923 0.263087568769774 0.255776086014890 0.272332288244187 0.262735214756637 0.260794017877411 2 2|0 +|/ 8331825 8332610 8332030.8 8331798 8333043 + gene protein_coding_gene FALSE TRUE AT2G19180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78890.1); similar to At1g16840/F17F16.27-related [Medicago truncatula] (GB:ABE84583.1) 0.6402122266013 6.57555573208024 4.20639095230602e-05 0.612029883560526 7.41679911016204 11.8406412167193 0.6402122266013 0.0890232452411358
AT4G12500_at 3.00208559877593 3.56288857814484 1.65393959036132 1.91698052043344 2.34881354543878 1.92736020331528 0.824291836029813 1.06074503989006 1.25287350187965 4.56747084917366 0.541704161604261 0.856834528951149 1.02526729204602 0.872906484013751 0.793163949861203 0.799932337507371 1.40648775767337 1.20688502496664 1.10122487394655 0.235507589895193 0.234159303990824 0.225370405076804 0.227824851981309 0.225529822707502 0.225370405076804 0.236257419419785 0.227769597808845 0.231682979032804 0.237917804424004 0.225370405076804 0.230961162794170 0.225749102051371 0.226611957353153 0.234364052345037 0.234015177493836 0.231436155332488 0.234181350471559 0.227582564176297 4 4 - 7414558 7414818 7414726.909 7414147 7414924 - gene protein_coding_gene FALSE TRUE AT4G12500.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12490.1); similar to HyPRP [Fragaria x ananassa] (GB:AAD01800.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.760010673955804 -6.57502188956863 4.20941721137051e-05 0.612428110082296 7.41624402155384 3.65968183092098 -0.760010673955804 0.135957932586037
AT2G12190_at 3.64366561957696 3.04313248894699 2.30201339313050 2.39611028996148 1.65731007590428 2.11133165099309 2.85668443684975 3.26808302901958 3.05549849521420 3.0726769468218 2.49138458915707 2.43268086545130 2.40492096205091 2.34655839271290 2.67108967468364 2.11698258432187 2.57488271841120 2.47861071966158 2.72145130362035 0.216547371988247 0.217070687394844 0.220880947149874 0.219015652010915 0.216547371988247 0.221558773602800 0.216547371988247 0.227891941119996 0.216547371988247 0.216587035371948 0.216547371988247 0.216547371988247 0.218525990207822 0.229048924170462 0.216547371988247 0.217818970601951 0.221563483418082 0.221347399041454 0.226349399639399 2 2 - 4899177 4899276 4899251.727 4898724 4900427 - gene protein_coding_gene FALSE TRUE AT2G12190.1 cytochrome P450, putative similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to CYP89A7 (cytochrome P450, family 87, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.798218404840063 -6.56874090079935 4.24519876182425e-05 0.617591515870192 7.40970952224352 5.35454857064371 -0.798218404840063 0.149357169276815
AT4G00400_at 6.88112228489191 7.51085224827282 3.76243042636265 4.33321461988948 6.42437896499968 6.13359345608444 7.9589374543354 8.51326174121422 7.79690256371797 7.0401822664813 8.20426378074346 8.81724646436028 8.73529655323583 8.21280440334276 8.4941789684976 7.84834580792161 6.37579026045382 8.2792754289877 7.27428403611057 0.177426162950024 0.178694418234952 0.188551714753449 0.186580484553364 0.180847991721642 0.182871782351944 0.183574458531347 0.187641962271536 0.182493877269699 0.186937601034885 0.173228689574596 0.173620888465410 0.177139358903615 0.175984994792790 0.177728133772766 0.176080582959612 0.201823036805482 0.174595648280864 0.181205625418856 4 4 - 174377 176591 175487.5 174070 176853 - gene protein_coding_gene FALSE TRUE AT4G00400.1 phospholipid/glycerol acyltransferase family protein Identical to Probable glycerol-3-phosphate acyltransferase 8 (EC 2.3.1.15) (GPAT8) [Arabidopsis Thaliana] (GB:Q5XF03;GB:O23061;GB:O23062); similar to ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT2G38110.1); similar to ATGPAT4/GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT1G01610.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE91390.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.901097572835795 -6.56629009249459 4.25924880773433e-05 0.619592924061113 7.40715802649869 14.1854021481127 -0.901097572835795 0.182667870639427
AT1G65760_at 1.44977865858782 1.60454081342682 1.27550686927657 1.32783031206035 1.21839268911137 1.19171917463031 2.01191667046043 1.77868603462523 2.11739883020499 2.38874552098559 1.56378820155732 1.13012642128393 1.73637576817907 1.68973178754676 2.03416233329420 1.58710569100308 1.69530355432936 1.69080138344856 2.44707805499382 0.196681536986752 0.192259537294084 0.193393185310873 0.189951770563272 0.193720165613744 0.195862110723442 0.204001507352520 0.204748969215194 0.196646209445791 0.195295941795354 0.191245499520038 0.191076020758305 0.194651125377505 0.192829793039002 0.191115432762988 0.189951770563272 0.195360634107152 0.206483919279348 0.191806640213353 1 1 + 24462779 24463354 24463084 24462254 24463378 + gene protein_coding_gene FALSE TRUE AT1G65760.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G65740.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE79226.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.567342346243301 -6.56573716394073 4.26242553199367e-05 0.620012417883799 7.40658224444203 3.46162900009324 -0.567342346243301 0.0494939585084542
AT3G23390_at 9.81173789401508 9.95001717644479 9.24512064744723 9.29766260237377 9.37947281932563 9.19513231077581 10.2377322797549 10.3951782792371 9.66900364733962 9.57482196195099 9.36016579867145 9.85633155135439 9.19183867050486 9.22607655025734 9.89730327089003 9.01980389564466 8.8011867682521 9.0666798183937 9.60333700100575 0.0885619973849286 0.092847776725335 0.091369276692419 0.0911329280143452 0.0921490904471146 0.0928687880286175 0.0916482292297206 0.0893915974143774 0.0932579429060225 0.0882666950629981 0.094084757895821 0.0923387006374647 0.0896299346618692 0.0948432664037105 0.0911336206324687 0.0914755363888341 0.103546338815469 0.0927252725014806 0.0889366520977594 3 3|0 +|/ 8375707 8376185 8375937.75 8375382 8376399 + gene protein_coding_gene FALSE TRUE AT3G23390.1 60S ribosomal protein L36a/L44 (RPL36aA) Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aB) [Arabidopsis thaliana] (TAIR:AT4G14320.1); similar to 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis] (GB:AAK94425.1); contains InterPro domain Ribosomal protein L44E; (InterPro:IPR000552) -0.566308445992543 -6.55930925519594 4.2995424897567e-05 0.625368455135112 7.3998849470596 19.1480788314692 -0.566308445992543 0.0491464529189736
AT2G23770_at 1.48846415601728 1.81117531293398 1.96995454462132 1.87549695734380 1.43404594316548 1.43079760676067 1.31694707801414 1.38370138543683 1.41017209841844 1.25178055832972 2.75082734658779 2.59037386529792 2.57743232413182 2.43722241379303 2.04971906396324 2.47950135052107 1.91401958050777 2.02492477401305 1.44302568867682 0.183232900645618 0.179983857571348 0.174927760350601 0.176969053699153 0.174927760350601 0.180450660410911 0.179394961491507 0.177423856654646 0.184365931519629 0.181522628114505 0.175672516154072 0.185443305676424 0.179088645951082 0.180383704306348 0.187943561678549 0.185756854954956 0.182511268055469 0.177905960515743 0.174927760350601 2 2 - 10127346 10127893 10127659.273 10127322 10129160 - gene protein_coding_gene FALSE TRUE AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G33580.1); similar to Os02g0193000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046166.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94286.1); contains InterPro domain Immunoglobulin-like; (InterPro:IPR007110); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) 0.581089127291282 6.55437252457133 4.32828396290917e-05 0.62950561956551 7.39473667869312 3.44948722553350 0.581089127291282 0.0593280797543807
AT1G47900_at 4.90420385167172 4.85450123801007 3.53524384109513 3.75885519663411 3.48866159139399 3.79555143031100 5.23745063711876 5.14977053609897 4.72753166922176 5.66919845031616 5.63297054405547 6.43882918783271 4.93914399969324 5.41684677474962 5.82725181151133 5.32104290594695 5.15892123368829 5.71146999062487 5.66761653182557 0.235835410009356 0.237519176232177 0.227996665839309 0.236719428590421 0.230371713745434 0.23988517996445 0.243988867145872 0.233308318352711 0.238839378553605 0.231436637531123 0.229520977138137 0.236405132518485 0.228425126007923 0.230886488184209 0.237119477062398 0.231208212397584 0.229311042523115 0.227996665839309 0.232965866754121 1 1 - 17651023 17651846 17651273.636 17650813 17654704 - gene protein_coding_gene FALSE TRUE AT1G47900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19835.1); similar to Putative myosin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL77142.1); similar to Os03g0246500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049544.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) -0.595438105987339 -6.5495031822868 4.35683485546602e-05 0.633614493030423 7.38965473202389 9.7958256768587 -0.595438105987339 0.0679868238800012
AT3G14395_at 2.53197307471528 2.41802116495603 3.42054758550491 3.30026300558658 2.87583790128256 2.4336214548565 5.03997173681849 5.6244930273459 4.85738503707499 5.28960075247093 5.36970381729177 3.25241026141012 3.13869289702112 4.20668499002377 3.6321503239344 3.19591068758106 4.17301454968850 4.06766542811055 3.24611878727475 0.204087278457351 0.205188365803969 0.206258857428593 0.204920632737842 0.202500805273322 0.213459495674982 0.213444666349647 0.218555840605688 0.214371158443977 0.211686625718846 0.208524188459839 0.205299712964960 0.202500805273322 0.206505559403242 0.218961715956494 0.203215208854353 0.209719729897472 0.202500805273322 0.212787295217558 3 3 + 4811054 4811254 4811121 4810930 4811663 + gene protein_coding_gene FALSE TRUE AT3G14395.1 unknown protein -0.740443168521093 -6.5490923307525 4.35925305583828e-05 0.633922579380002 7.38922576223898 7.62753977471139 -0.740443168521093 0.130041563252032
AT4G33540_at 8.19928402603303 7.91554187591813 9.11352968997226 9.10478450325911 9.08392878386422 7.54698934601053 7.4418203852914 6.84482085369372 4.97267135691942 6.04061942788853 7.1569672942156 6.85686808081859 6.76973015584659 7.35023306168228 6.61018944100057 6.9977272841546 7.26147966579643 6.83653202829606 5.66552215488111 0.220099115226919 0.213036340247768 0.218379872696841 0.216450967567244 0.21961129131207 0.229916866510413 0.215270834227406 0.218007084593501 0.24182360469443 0.223846248430243 0.213036340247768 0.217733195233682 0.214912523380727 0.228843206878129 0.223269591660159 0.213249745655761 0.229638723133970 0.222426817348061 0.215581823214489 4 4|0 +|/ 16132567 16133646 16133200.125 16130827 16133963 + gene protein_coding_gene FALSE TRUE AT4G33540.1 metallo-beta-lactamase family protein similar to Os02g0829500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048607.1); similar to hypothetical protein all1228 [Nostoc sp. PCC 7120] (GB:NP_485271.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 1.26615142939456 6.54863820329144 4.36192764409666e-05 0.634267898728095 7.38875157554124 14.4261225278583 1.26615142939456 0.289533297539998
AT2G27810_at 5.59029919790488 5.76024360974175 5.20196654765206 4.87731952482727 6.07313254220749 6.07932970388493 5.90902189199277 5.91000776808673 4.86460785971503 5.76310860183668 6.79881775992813 7.73752120642273 6.85617044821291 6.7888792938804 6.66330044857871 6.6247405738929 6.75140528803778 6.26629660285704 5.57851972559019 0.238927754192751 0.237641862771788 0.242892992225874 0.2430941261303 0.241031297071626 0.258130536831265 0.246533597824554 0.24070800482853 0.243482010052056 0.243190009199713 0.245054602014327 0.250166883331861 0.244488616564659 0.257282641772639 0.244262209140557 0.237641862771788 0.241748238598902 0.240561409611405 0.238876954460755 2 2 + 11862238 11863002 11862672 11859157 11863368 + gene protein_coding_gene FALSE TRUE AT2G27810.1|AT2G27810.2|AT2G27810.3 xanthine/uracil permease family protein Identical to Nucleobase-ascorbate transporter 12 (AtNAT12) (NAT12) [Arabidopsis Thaliana] (GB:Q3E7D0;GB:Q8LPL9;GB:Q9ZUY2); similar to permease [Arabidopsis thaliana] (TAIR:AT4G38050.1); similar to Os01g0857500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044854.1); similar to putative permease [Gossypium hirsutum] (GB:AAT64019.1); similar to Os07g0490500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059675.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043)|Identical to Nucleobase-ascorbate transporter 12 (AtNAT12) (NAT12) [Arabidopsis Thaliana] (GB:Q3E7D0;GB:Q8LPL9;GB:Q9ZUY2); similar to permease [Arabidopsis thaliana] (TAIR:AT4G38050.1); similar to putative permease [Gossypium hirsutum] (GB:AAT64019.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043)|Identical to Nucleobase-ascorbate transporter 12 (AtNAT12) (NAT12) [Arabidopsis Thaliana] (GB:Q3E7D0;GB:Q8LPL9;GB:Q9ZUY2); similar to permease [Arabidopsis thaliana] (TAIR:AT4G38050.1); similar to Permease I, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99620.1); similar to Os03g0823800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051745.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.587178343195216 6.54654941020174 4.37425227345294e-05 0.636016280560057 7.38657007830967 11.7816501891740 0.587178343195216 0.0634230986741048
AT3G15010_at 7.20286099192594 7.30327696647609 7.61710055819816 7.58307372676574 7.63850282079302 7.65699563178288 7.52016498596552 7.46094792233528 6.88956262057729 5.84793704426724 6.68850608142431 7.0462132017757 7.17830257947566 6.98392512589159 7.30121361561539 7.11263880704434 7.32312484045367 7.32911229941508 6.15763912051534 0.164000559373032 0.159062348240409 0.167083875667352 0.163396338056553 0.165285149338776 0.179917176868317 0.166941459739501 0.167009637392259 0.177455114453229 0.185801876797471 0.160832283515591 0.166374316689930 0.170965648912623 0.164492000704719 0.165280516528909 0.162950836626853 0.167272205012708 0.172336054571948 0.182336516140091 3 3 + 5053519 5054023 5053818 5052738 5054949 + gene protein_coding_gene FALSE TRUE AT3G15010.1|AT3G15010.2 RNA recognition motif (RRM)-containing protein similar to UBA2A, AU-specific RNA binding / RNA binding [Arabidopsis thaliana] (TAIR:AT3G56860.2); similar to Os01g0614500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043567.1); similar to RNA-binding protein AKIP1-like [Solanum tuberosum] (GB:ABB86250.1); similar to Os01g0265800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042672.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.537052720738126 6.54542334951668 4.38091190974625e-05 0.636940782558007 7.38539374111158 14.2072450325338 0.537052720738126 0.0212581562584312
AT4G28760_at 6.64381678402633 7.25555101892333 5.33383065031186 5.58323367474707 6.76151384614704 6.36956387664231 7.73099201348275 7.28468369621854 6.68487716953773 7.54827646779722 6.81378245180523 6.95393708713497 6.80621220243879 6.78155983554815 6.64694518106017 7.06951776306167 6.76642652426821 7.02786304293733 7.54129366222025 0.232195119785016 0.220335701656829 0.241532948295710 0.221942947167892 0.216880449544533 0.236197951831188 0.216880449544533 0.225458341503737 0.243655620726738 0.226298454595363 0.224580161102909 0.219487444677592 0.216880449544533 0.228112295352573 0.236843385480702 0.216880449544533 0.233358711061152 0.224586630257984 0.223464003166378 4 4 + 14211231 14211788 14211489.182 14207466 14212056 + gene protein_coding_gene FALSE TRUE AT4G28760.1|AT4G28760.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20240.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89949.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain gb def: Hypothetical protein At4g28760 (PTHR21726:SF7) -0.80829697751029 -6.544346917391 4.3872881939671e-05 0.637823957638937 7.3842690517588 13.6786130005042 -0.80829697751029 0.153740007780476
AT2G40540_at 8.77386415299313 8.9896662984643 7.80585762799526 7.85837903807486 8.54666640211568 8.67101581124179 9.10377509639512 9.1720027229648 9.308373270683 9.17360107005395 9.16872234517518 9.17643996903356 8.86404896322402 9.0122298178208 9.03613460668615 8.81344289887872 8.56519498667519 8.78759283663094 9.29301808690715 0.118654868079788 0.122501922672576 0.137353931667054 0.136012460481831 0.114956060036266 0.122665165718478 0.122623065863799 0.119544762862745 0.116675095219938 0.121116569249795 0.120095973781992 0.120085313733168 0.119967990475318 0.119897910135947 0.118693776600744 0.120532516231715 0.124212859845078 0.115390324577589 0.124731813835024 2 2 + 16941003 16941532 16941220.909 16937942 16941666 + gene protein_coding_gene FALSE TRUE AT2G40540.1|AT2G40540.2 KT2 (POTASSIUM TRANSPORTER 2); potassium ion transporter|KT2 (POTASSIUM TRANSPORTER 2) putative potassium transporter AtKT2p (AtKT2) mRNA, Identical to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2) (POT2) [Arabidopsis Thaliana] (GB:O22881;GB:O22398); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to KUP2 [Vitis vinifera] (GB:ABE98260.1); similar to potassium transporter HAK2p [Mesembryanthemum crystallinum] (GB:AAK53759.1); similar to Putative potassium transporter 8 (OsHAK8) (GB:Q8VXB5); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.559851177023284 -6.53885237491983 4.41999059021944e-05 0.6425340321002 7.37852519112963 17.7083066998958 -0.559851177023284 0.045604697665172
AT1G71820_at 7.83153565887373 8.04823919343427 8.17515488617932 8.02043325657845 8.19917576146123 7.74307100490796 6.62626188396118 7.33603342858427 7.03804380203066 6.70242202831886 8.4415128370217 8.00304968617447 7.7641879707542 8.04962813844213 8.08536907180848 7.93297233979368 7.394468565787 7.0782077073267 6.68641690202683 0.184553303540213 0.175822254490691 0.177666786155862 0.175822254490691 0.175964472078952 0.179070764614084 0.177404590320118 0.181375982532537 0.182808835148759 0.17840663134977 0.179996913465388 0.175822254490691 0.181319399844123 0.187397064407825 0.180414747461537 0.175822254490691 0.188049119923043 0.177979684424826 0.186332811256268 1 1|0 +|/ 27019368 27020355 27019864.1 27013296 27020770 + gene protein_coding_gene FALSE TRUE AT1G71820.1 similar to Exocyst complex component Sec6 [Medicago truncatula] (GB:ABE85247.1); similar to Os02g0749500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048127.1); contains InterPro domain Exocyst complex component Sec6; (InterPro:IPR010326) 0.804327407457403 6.52760678382608 4.48773913216333e-05 0.652337760251261 7.3667537036535 15.0738058594629 0.804327407457403 0.153102664946276
AT1G77590_at 4.42018496211551 4.21429203546597 3.32664119526143 3.29207390640579 2.99654320121881 3.00251047246198 5.25395336522841 5.02111778299967 4.28553199191042 4.79962639012775 5.37938720870258 6.30327614897462 4.65042052917623 5.08313733753308 5.807667812637 4.74465363027389 4.37392169155759 4.54463921678322 4.95111221355711 0.247819833511386 0.247165585765191 0.260767702602059 0.258204677147156 0.248814296630538 0.254871194192664 0.247320143549199 0.248736177287612 0.251125413581719 0.249340191072777 0.258912688034158 0.250862100179767 0.256237011621853 0.251609690434005 0.255063381242287 0.249937487006575 0.254672631511716 0.259074841676641 0.251103486448779 1 1|0 -|/ 29153397 29154194 29153762.222 29153150 29156670 - gene protein_coding_gene FALSE TRUE AT1G77590.1 LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9); long-chain-fatty-acid-CoA ligase Encodes major plastidic long chain acyl-CoA synthetase with a slight substrate preference of oleic acid over any of the other fatty acids. similar to long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) [Arabidopsis thaliana] (TAIR:AT2G04350.2); similar to putative long chain acyl-CoA synthetase 9 [Trifolium pratense] (GB:BAE71220.1); similar to Os12g0168700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066256.1); similar to long chain acyl-CoA synthetase [Brassica napus] (GB:CAC19877.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.570406880429519 -6.52451120380779 4.50658296698681e-05 0.655031834251532 7.36350967329384 8.83573702122129 -0.570406880429519 0.0541290012686196
AT3G46620_at 8.45812641711327 8.59812344421272 8.85751096470587 8.87631113767426 8.19202019634502 8.20267261841795 7.45320727946694 7.6324716451913 7.33252191492294 6.58015437587441 7.64831282893188 7.85044377247034 7.33970267420865 7.4911292493075 7.58235767712098 7.56012239017145 6.69185210400998 7.24319869905658 6.54698736158758 0.167837909561316 0.173290978064832 0.176040623571221 0.180178255076829 0.172482155864827 0.176750812965169 0.169817815392864 0.173326750580383 0.184959519451115 0.184446733609743 0.171854766654690 0.168069441710522 0.175124776893335 0.176533259470166 0.169166090177920 0.171270511960456 0.179833634732623 0.170229473882533 0.178876619590995 3 3 - 17189905 17190352 17190133.273 17189682 17191052 - gene protein_coding_gene FALSE TRUE AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G59550.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE81988.1); contains InterPro domain Protein of unknown function DUF1117; (InterPro:IPR010543); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.551324286535542 6.52430056737318 4.50786825811642e-05 0.65517357263464 7.36328887780367 15.4066943671599 0.551324286535542 0.0395390337090345
AT3G47080_at 5.67393471529564 5.79876721321633 5.51824840478603 5.51389657630356 5.17487787262755 4.97073716907381 7.09119415143028 6.79144195765952 4.78001224842692 5.97595774666349 4.94731655541821 5.47622038595183 5.30261224795781 5.37973864872876 5.30862212264596 5.55413293520506 5.77351212953444 5.11123695189123 5.71887825866716 0.274905549499218 0.274892239937562 0.28107152967297 0.281697891664324 0.277039942693128 0.286534832064067 0.274575035876077 0.275433706147234 0.273214401629477 0.282665622281018 0.274590409317822 0.272206689946326 0.273448545324811 0.271534997492299 0.277951835104449 0.271109988211074 0.284966489253909 0.272068067925721 0.274492922606287 3 3 - 17349426 17350097 17349752.273 17349091 17351381 - gene protein_coding_gene FALSE TRUE AT3G47080.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G07280.2); similar to binding [Arabidopsis thaliana] (TAIR:AT2G29670.1); similar to Os05g0447700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055695.1); similar to Os01g0855200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044840.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:AAM93690.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.589668295560948 -6.51742938396969 4.55001190340127e-05 0.661253229921307 7.35608225063179 11.2407822984253 -0.589668295560948 0.0663787918302437
AT4G39860_at 5.10920100416325 4.60256825457905 5.3907593220121 5.2942502921845 6.01090065548935 5.35929681124273 4.13935217914236 4.34799000615783 4.27147209463847 3.82049708612155 4.4914201177692 5.00718863256113 3.96868174535886 4.5689118455303 5.0144099919913 4.97922811737065 4.12736207061736 4.56144184071825 3.83684529601806 0.230925100238819 0.224363920009457 0.222778376194098 0.222462032318791 0.221389807907983 0.227661646046694 0.219906684599368 0.226890439997095 0.220177853234208 0.217876316109354 0.213807165138118 0.229476928906364 0.219261377193018 0.222620397891273 0.219369971877392 0.217678338957189 0.219504075061542 0.218992278870083 0.215175968940122 4 4|0 +|/ 18500829 18501410 18501116.2 18499747 18501636 + gene protein_coding_gene FALSE TRUE AT4G39860.1|AT4G39860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78150.2); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os04g0455600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052962.1); similar to Os02g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047207.1) 0.788791481100911 6.51738430176176 4.55028979985424e-05 0.661253229921307 7.35603494163542 9.31484083437089 0.788791481100911 0.1482734185903
AT1G16870_at 7.12333403365046 7.18893693168277 6.85880481546017 6.61247817183676 6.96713629688751 6.64816546827302 7.36497995026419 7.60001800884333 6.72853780478701 6.53939411455912 5.40513600982877 5.97091403364191 5.64126614910376 5.55888983366488 6.51300133533899 5.97252379875412 5.57822007351338 6.05486411602539 6.31029802496923 0.201025337456806 0.202280841768389 0.202950066071 0.202751353700865 0.202168023130327 0.212439341770733 0.202232177676887 0.205221980252956 0.204862046580594 0.203855297496183 0.199740486288013 0.197726487341129 0.203811998616037 0.197726487341129 0.199145087230157 0.197726487341129 0.236211857217801 0.220676147569805 0.203753287187456 1 1|0 -|/ 5770969 5771869 5771521.2 5770727 5773244 - gene protein_coding_gene FALSE TRUE AT1G16870.1 mitochondrial 28S ribosomal protein S29-related similar to Os07g0202900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059138.1); similar to Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 (ISS) [Ostreococcus tauri] (GB:CAL53223.1); contains domain SUBFAMILY NOT NAMED (PTHR12810:SF2); contains domain FAMILY NOT NAMED (PTHR12810); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.618447886183521 -6.51548694373788 4.56200202487531e-05 0.662904514234631 7.35404355907807 13.2269459930318 -0.618447886183521 0.0815316766770777
AT3G23810_at 7.41657045670965 7.67762448192105 6.45359425926382 6.7414818093412 6.3807828465088 6.07711402236591 10.0340674380290 10.4471892100284 8.62138831472948 8.98668573258676 10.2343597670630 10.6368876392061 9.21734816465878 9.59107223291607 10.7057727687547 9.80268031112184 8.55608851944943 9.74690917414432 8.5068591841832 0.229574648244837 0.222709963117956 0.257072888549724 0.245030132543499 0.247328438396676 0.259100919744923 0.227711124793033 0.22390097323312 0.226338846939640 0.221655145243584 0.220216580176280 0.220250449473081 0.222408742947955 0.222491079487416 0.219676949136884 0.218389330532325 0.229274001274571 0.216984108090061 0.227558675078624 3 3 - 8588046 8588578 8588311.182 8587671 8589720 - gene protein_coding_gene FALSE TRUE AT3G23810.1 SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase Identical to Adenosylhomocysteinase 2 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 2) (AdoHcyase 2) (SAHH2) [Arabidopsis Thaliana] (GB:Q9LK36;GB:Q8LPS8;GB:Q944K5;GB:Q949Z9); similar to HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT4G13940.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P35007); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Cytokinin binding protein CBP57) (GB:P68172); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P93253); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043) -0.687103791985479 -6.51498013356526 4.56513598192895e-05 0.663314258174276 7.35351153232407 16.9117368485197 -0.687103791985479 0.111336543894966
AT3G18030_at 4.59009678464913 4.59291682931794 4.56848921451829 4.53190580080842 5.73179847280114 5.70314090218038 3.94860927990481 4.32421099685305 3.78168129473562 3.72571220112066 4.40535649682169 4.35814882598559 3.94888372228391 4.39345596964428 4.48782290718050 3.75868492594107 3.37233445493692 4.17160982525443 3.61259501252971 0.247948916587987 0.241740967102534 0.246656818325132 0.245966439978688 0.245909851414853 0.252762102136991 0.245636661376203 0.238891248841722 0.253822303148561 0.246048198829502 0.247121551688707 0.249445878712543 0.241569555783865 0.243799286468169 0.244908550712744 0.238891248841722 0.252528049835218 0.242179994967626 0.242510584992307 3 3 - 6167908 6168552 6168232 6167650 6168954 - gene protein_coding_gene FALSE TRUE AT3G18030.1 ATHAL3A (Arabidopsis thaliana Hal3-like protein A) flavin mononucleotide flavoprotein involved in salt and osmotic tolerance HAL3A encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis. HAL3A is predominant over another gene with the presumably same function (HAL3B). Identical to Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) (Halotolerance protein Hal3a) (AtHal3a) (PPCDC) (AtCoaC) (HAL3A) [Arabidopsis Thaliana] (GB:Q9SWE5;GB:Q6ID92); similar to ATHAL3B (Arabidopsis thaliana Hal3-like protein B), electron carrier [Arabidopsis thaliana] (TAIR:AT1G48605.1); similar to Chain A, Ppc Decarboxylase Mutant C175s (GB:1MVL); contains InterPro domain Flavoprotein; (InterPro:IPR003382) 0.587624714886607 6.5118664694759 4.58444059477998e-05 0.666073374015583 7.3502420085496 8.6582460236965 0.587624714886607 0.0654970649151137
AT2G35635_at 8.6333124780077 8.74823272082054 9.40809604527043 9.34143039645269 9.10962386477968 9.03238677238775 8.9336788579273 9.03076531726622 8.33475531465181 8.33125199638108 9.00615130594455 8.58297073202968 8.89883842807549 8.87232184469644 8.6287598518671 9.17933815053247 9.0227234689352 9.14417040190192 7.99426987288008 0.127630222579914 0.128083743982956 0.135380243219734 0.133943835523022 0.133562496527277 0.143241864582728 0.126865282425428 0.133670178076386 0.139560821732804 0.132242513851773 0.131648414838837 0.128061136357076 0.125693416817684 0.132315418798127 0.128005465955304 0.124326628799326 0.130514979017490 0.128074570438062 0.135539937137193 2 2|0 +|/ 14988144 14988987 14988608.2 14988049 14989195 + gene protein_coding_gene FALSE TRUE AT2G35635.1 UBQ7 (RELATED TO UBIQUITIN 2) encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to NEDD8-like protein RUB2 precursor (Ubiquitin-related protein 2) (AtRUB2) (RUB2) [Arabidopsis Thaliana] (GB:Q8RUC6); Identical to NEDD8-like protein RUB1 precursor (Ubiquitin-related protein 1) (AtRUB1) (RUB1) [Arabidopsis Thaliana] (GB:Q9SHE7); similar to RUB1 (RELATED TO UBIQUITIN 1) [Arabidopsis thaliana] (TAIR:AT1G31340.1); similar to Os09g0420800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063199.1); similar to Os06g0650100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058221.1); similar to polyubiquitin 2 [Deschampsia antarctica] (GB:AAM22748.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.541601902288700 6.50605735741832 4.62069105205897e-05 0.671293996043127 7.34413779784638 17.5981916404318 0.541601902288700 0.0314570921239128
AT1G20510_at 8.55849549120262 9.28164607995577 8.84535283809912 9.15634425272568 8.63714241067037 8.48399563832421 7.51649726444325 6.80939718208855 6.29608446284675 6.71074762934061 7.43020486650627 7.85651861979644 7.06056366216968 7.50586918121577 7.24427825924313 7.75059951260631 7.76226638393712 7.79374102825096 6.46025575662151 0.245235305212068 0.251917520018551 0.248577528682357 0.252573129725176 0.237951694750469 0.243643847747713 0.234821073770864 0.241614298872549 0.250786169430862 0.246544766671588 0.239226050326696 0.234821073770864 0.236887476091724 0.234821073770864 0.243855997086030 0.235451370124791 0.249784165711828 0.235589418553224 0.248087925486763 1 1|0 -|/ 7103640 7104750 7104206 7103445 7105871 - gene protein_coding_gene FALSE TRUE AT1G20510.1|AT1G20510.2 OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20480.1); similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT5G38120.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22700.1); similar to Os03g0132000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048867.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873); contains InterPro domain Src homology-3; (InterPro:IPR001452)|similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20480.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE87408.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.90033784340586 6.50598690941432 4.62113254681974e-05 0.671311925076504 7.34406373665193 15.4308761307647 0.90033784340586 0.185023430982491
AT3G28270_at 7.94429560419045 8.25516530319187 10.8154074899576 10.9943153065279 10.0017607856033 9.63705393258539 10.5414589651196 10.6980385472012 7.45312714230836 9.08117121597419 7.43103508324266 6.80928428565481 9.0221745849732 8.56044307727316 6.30517522316622 10.0608334490934 10.2411604593659 8.27524599626232 7.63958572947695 0.206424962272521 0.195423986766589 0.201706121684600 0.204564203633786 0.205737094985991 0.208938430792033 0.211591023536453 0.199345678510406 0.203190178693944 0.198262395495520 0.203283914345757 0.206544770388468 0.196872908628050 0.197105273898615 0.211695352238078 0.196457710600292 0.196657159378370 0.199942374224633 0.201264886370723 3 3 + 10540593 10541047 10540755.273 10539342 10541261 + gene protein_coding_gene FALSE TRUE AT3G28270.1|AT3G28270.2 similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28290.1); similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28300.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE78510.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) 0.641301215517625 6.5058479551049 4.62200350026137e-05 0.671392228447966 7.34391765312596 18.0590021830299 0.641301215517625 0.0925763571895707
AT4G14320_at 10.1868329855627 10.0991076556155 9.48982778299229 9.53706559968862 9.28974791706506 9.36614036123077 10.0070058113045 10.0948932961301 9.80348476624098 9.88035461177764 9.4701194824500 9.79167870685766 9.23935471364312 9.302864268182 9.88245249100037 9.29089358831347 9.27619715779863 9.31829072846543 9.85123447708554 0.106277795436401 0.104228195946536 0.106502086348428 0.106812401226541 0.105261557890557 0.106945314797796 0.103776625624174 0.109460260318587 0.109519142377093 0.108700055149823 0.110599461908737 0.106340341301130 0.10543728321007 0.108703923874813 0.10446216653251 0.105659521412443 0.112934226607818 0.104155964610154 0.108348065737493 4 0|4 /|- 8242713 8243189 8243003.375 8242501 8243895 - gene protein_coding_gene FALSE TRUE AT4G14320.1 60S ribosomal protein L36a/L44 (RPL36aB) Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis] (GB:AAK94425.1); contains InterPro domain Ribosomal protein L44E; (InterPro:IPR000552) -0.537403874094111 -6.50519060027486 4.62612612686954e-05 0.6719448199278 7.3432265283321 19.4045806814271 -0.537403874094111 0.0265215293875130
AT1G26570_at 2.91137986333564 3.39231389809980 1.88028696955032 2.21876760716156 2.21714764756158 1.98771657992366 3.50325806931199 3.68114708026431 3.67283704936006 3.00597954976345 3.66882491362777 4.05367139109846 3.18450596236388 3.32364992816967 4.08631742375964 3.21381984784507 2.7495077664873 3.24036031213202 3.89646953725166 0.245997647262404 0.238451937054371 0.247719146610186 0.251376286909712 0.240688391334573 0.242720718078612 0.242068404245494 0.237453449340481 0.250617588889685 0.259563432365976 0.237453449340481 0.248344225375341 0.237453449340481 0.241497222096002 0.245049791061081 0.241004743934625 0.237453449340481 0.253110525467554 0.241600005047271 1 1 + 9183639 9184205 9183955.909 9182191 9184380 + gene protein_coding_gene FALSE TRUE AT1G26570.1 ATUGD1/UGD1 (UDP-glucose dehydrogenase 1); UDP-glucose 6-dehydrogenase similar to UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G15490.1); similar to UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) (GB:Q96558); similar to UDP-glucose dehydrogenase [Cinnamomum osmophloeum] (GB:AAR84297.1); similar to UDP-glucose dehydrogenase [Populus tremula x Populus tremuloides] (GB:AAF04455.1); contains InterPro domain UDP-glucose/GDP-mannose dehydrogenase; (InterPro:IPR001732); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) -0.690529106154952 -6.49547227393148 4.68753673981109e-05 0.680817836090163 7.33300054706064 6.20659100038971 -0.690529106154952 0.113499297133748
AT3G25940_at 4.94626926989925 5.45186410209296 4.42598923567289 4.41425285706452 4.32129123116081 3.87163923587906 5.1139182428527 5.56753979414387 3.92101634295757 4.22703784174949 3.59939659892579 3.45745263984097 4.19614718893145 3.41309502024041 3.49631232573393 4.02491339886971 3.60319846473397 3.79834655029421 4.50279439716938 0.308251411546544 0.305731875759298 0.303871308927222 0.31453090132417 0.304868508413784 0.317329556735646 0.302223834491256 0.302223834491256 0.311551020784244 0.304559729189586 0.313304938396499 0.308199119695925 0.306422656735976 0.310053162961096 0.310798645841040 0.302223834491256 0.317577371018025 0.302223834491256 0.302718403776302 3 3|0 +|/ 9496381 9497144 9496861.857 9495934 9497329 + gene protein_coding_gene FALSE TRUE AT3G25940.1 transcription factor S-II (TFIIS) domain-containing protein similar to putative RNA polymerase I subunit [Oryza sativa] (GB:AAK18841.1); contains InterPro domain Zinc finger TFIIS-type 2; (InterPro:IPR013138); contains InterPro domain DNA-directed RNA polymerase, subunit C11/M/9; (InterPro:IPR012164); contains InterPro domain Transcription factor TFIIS; (InterPro:IPR001222) -0.764973233074356 -6.49470423707663 4.69242709818314e-05 0.681481187469138 7.33219171914108 8.72187414646498 -0.764973233074356 0.140986276797599
AT3G43960_at 2.32946413712209 2.7132454561683 1.94654899039894 2.21197200306703 1.45815268968047 1.83740259241722 3.34628396647791 3.68043298576200 3.01277982340811 3.4105384962726 2.82730241578668 4.00086515559211 2.62318667858140 2.62292184948233 3.62581664146730 2.86640913187542 2.70752348888363 3.31556285434255 3.55978956662363 0.227664420999706 0.227664420999706 0.234493245112069 0.236173298792135 0.231156970140181 0.235354585593373 0.229382469489328 0.235301771592321 0.246293549919399 0.244202400551833 0.234164278131942 0.228860715522820 0.236788696790932 0.228989951713396 0.238449143830258 0.23107296648228 0.246922552596499 0.229728874326920 0.235804351637632 3 3 - 15785110 15785814 15785349.818 15785042 15786644 - gene protein_coding_gene FALSE TRUE AT3G43960.1 cysteine proteinase, putative Identical to Probable cysteine proteinase At3g43960 precursor (EC 3.4.22.-) [Arabidopsis Thaliana] (GB:Q9LXW3); similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G19400.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60578.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -0.703920834629173 -6.4867520528515 4.74338384937256e-05 0.688834202605883 7.32381140463061 5.64113843052151 -0.703920834629173 0.119046456942385
AT1G32770_at 0.640235213768385 0.716688098009626 2.40339117812504 2.25820008607936 1.72405297057237 1.21803470314331 1.06027779521046 0.538979502642897 0.84886582753921 1.17332476760611 0.812265741333365 0.716612977401262 1.34134267798289 1.53180028387104 0.638381034467841 1.12425313932853 3.19177255292615 1.05880645578586 0.989212764093192 0.231883819789056 0.230774974220201 0.236519409452375 0.243271112201037 0.229897216789961 0.227325536745154 0.229252568549138 0.227637180394270 0.236768436323703 0.226621331097603 0.227761596523370 0.229918977555892 0.229350310033921 0.231789500064749 0.227557773953172 0.225655281261839 0.256524540984426 0.225808235915837 0.228936000438690 1 1 - 11865328 11865809 11865588.636 11865323 11866930 - gene protein_coding_gene FALSE TRUE AT1G32770.1 ANAC012/NST3/SND1 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12, NAC SECONDARY WALL THICKENING PROMOTING 3); transcription factor/ transcriptional activator Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. similar to NST1 (NAC SECONDARY WALL THICKENING PROMOTING FACTOR1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46770.1); similar to putative OsNAC7 protein [Oryza sativa (japonica cultivar-group)] (GB:BAA84803.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.729988910106564 6.48444787708827 4.75825926907323e-05 0.690946828462124 7.32138120474796 2.47283518226057 0.729988910106564 0.128891677464444
AT4G35030_at 1.77202420622595 1.73376743932782 0.914917933850004 1.20593041534269 1.09738945041311 1.36073796147377 1.95699399652274 2.11021708969195 1.65359184500141 1.81313461797486 1.39180433920654 1.22137399510668 1.67967472394963 1.44205469294439 1.18706057800946 1.01923872630506 0.792929807443021 1.29972420088523 1.64356928889872 0.196197763364013 0.195179175902521 0.198403015717635 0.193689425029821 0.196613776224294 0.200337781072127 0.199808595682403 0.198145972859236 0.200884012390012 0.197188752551653 0.196548192444126 0.202144223190490 0.198420165719902 0.19762604392351 0.196088282216009 0.193689425029821 0.197806055879073 0.19937163587579 0.199360390617249 4 4 + 16677284 16677926 16677598.273 16676134 16678118 + gene protein_coding_gene FALSE TRUE AT4G35030.1|AT4G35030.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G16750.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94898.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G16750.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94898.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.598853013491317 -6.48156183858077 4.77696162790687e-05 0.693614828372078 7.31833606746652 2.99782958674246 -0.598853013491317 0.0732128814922466
AT1G07180_at 8.70497514276165 9.23340738150261 8.64873454653188 8.83256736932966 8.8984065351357 8.25543091388378 10.6829488808873 10.8244057452301 9.57574169622917 10.5696386483277 9.77046047908828 9.93448632799978 9.9758537877369 10.0401940163744 9.62571015141998 10.4613035900857 9.5678911909163 9.73900683568275 10.6400250841272 0.151203665394450 0.146160605646751 0.167530852822559 0.148797281959655 0.155684318875384 0.178348902111948 0.148851279661579 0.146160605646751 0.163754466867968 0.146160605646751 0.157798759724129 0.146160605646751 0.146160605646751 0.149051390978340 0.150420410025555 0.146160605646751 0.163498403016581 0.154902574110099 0.146160605646751 1 1|0 +|/ 2205948 2206731 2206409.5 2204319 2206933 + gene protein_coding_gene FALSE TRUE AT1G07180.1 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. similar to NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G29990.1); similar to putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum] (GB:CAB52796.1); similar to Os07g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060003.1); similar to Os01g0830100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044694.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.787543979261765 -6.47707454281463 4.80619713700649e-05 0.697811762321973 7.31359863749966 19.3356921178950 -0.787543979261765 0.149515907774707
AT4G12070_at 8.32668067120873 8.20854850716232 8.0802753514422 8.49468410667451 8.66907013230873 8.1471923006257 6.9237024503627 6.85934468783667 6.86984855478426 6.65044816425484 7.07609418791553 6.9614728515797 7.42605848832462 7.38231621205829 6.85329092571506 7.3070473673222 7.42770839982535 7.35325707484666 6.26204705541351 0.166076481170118 0.168455940916115 0.169643965203962 0.168843111999254 0.166895660496506 0.172972498799737 0.172454736237715 0.175635326090927 0.181212430219269 0.172746626559832 0.163842372038694 0.163882598495827 0.163842372038694 0.165730761411938 0.170203905662200 0.164173677690702 0.168363545981847 0.170397117136739 0.173627641739286 4 4|0 +|/ 7233564 7234238 7233951.2 7231816 7234495 + gene protein_coding_gene FALSE TRUE AT4G12070.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD12897.1); similar to Os02g0717600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047934.1) 0.6987637452922 6.4727038968846 4.8348569391507e-05 0.701924530425898 7.30898112548527 14.872447415919 0.6987637452922 0.117650219799461
AT3G12150_at 5.66890883347413 6.18523299233869 5.37379880991893 5.22686693070687 6.14813003566411 6.08398918508663 7.30886784978298 7.05083596287333 6.65499512132127 6.76573939328365 6.6369442546066 6.47145796987867 6.22031127306045 6.18540893578098 6.44934607267234 6.52096709453901 5.64042674291674 6.05184346819175 6.84086761791269 0.197146188747852 0.195725576605824 0.194643677933175 0.1998749399353 0.195939032665318 0.207891756314842 0.199150328563098 0.199464297506221 0.204115018828735 0.199369978079510 0.191322703602725 0.189958122809427 0.194309883700791 0.198967436566762 0.192350265286033 0.198951673566596 0.210867844840241 0.189958122809427 0.19753489453704 3 3 - 3876728 3877766 3877219.909 3876414 3878907 - gene protein_coding_gene FALSE TRUE AT3G12150.1 similar to unnamed protein product; contains similarity to unknown protein gb|AAF49891.1 gene_id:T23B7.11-related [Medicago truncatula] (GB:ABE94640.1); similar to Os02g0195000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046183.1); contains domain no description (G3D.3.40.50.1820); contains domain SUBFAMILY NOT NAMED (PTHR13617:SF1); contains domain alpha/beta-Hydrolases (SSF53474); contains domain FAMILY NOT NAMED (PTHR13617) -0.663522160161599 -6.47008249969663 4.85213409181409e-05 0.70438430610865 7.30621013272627 12.6438066269615 -0.663522160161599 0.103670305129484
AT2G33390_at 6.69382178462099 6.93084722454269 7.20120421391746 7.23049509983868 7.67780690164642 7.6704168804228 6.6952178955235 6.38973570461 6.30537727254917 6.47153542763894 7.08895257875089 6.73889347570036 6.87988260850915 6.95556431607893 6.68536325637147 6.9544576562698 6.90794822088414 6.43192339734953 6.49710572600317 0.165756076988924 0.164916695582033 0.170828541630107 0.178313543694400 0.167546829042552 0.176400408221334 0.166269556603243 0.16714174798288 0.181074260441817 0.167864576192910 0.17364266352757 0.171329662414026 0.167305750451083 0.166161186439249 0.175269844951887 0.162397389093521 0.162015795280220 0.174673471386236 0.171446712924205 2 2|0 +|/ 14158793 14159747 14159089.3 14158655 14159820 + gene protein_coding_gene FALSE TRUE AT2G33390.1 unknown protein 0.58663775082045 6.4696531916893 4.85496987823498e-05 0.70474742752459 7.30575621586117 13.6887162118752 0.58663775082045 0.067115988305149
AT1G79950_at 6.92349516860125 7.1189043827296 6.38164323700558 6.1953053520739 6.68474932826414 6.58436924016542 6.668875913862 6.71157833281938 5.81650666121034 5.78461645849227 4.95901898577786 5.51043810726366 4.84944378886898 5.37798666384676 5.38682466739575 5.62323582590615 5.20782996537513 5.33945963328771 6.42234710853644 0.211984962133136 0.203930213846956 0.211824201892850 0.203930213846956 0.204494765800060 0.212085997741896 0.203930213846956 0.20787400370906 0.206379074266312 0.208416667661679 0.205739358955415 0.207744570219357 0.205936722152867 0.205414883608358 0.211704066894239 0.207708084578687 0.2131712523416 0.216820160588706 0.209140166148842 1 1 + 30083773 30084358 30084096.727 30078473 30084430 + gene protein_coding_gene FALSE TRUE AT1G79950.1 helicase-related similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20750.1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20720.1); similar to DEAH helicase isoform 5-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52706.1); similar to Os01g0592900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043456.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain DEXDc2; (InterPro:IPR006554); contains InterPro domain Helicase c2; (InterPro:IPR006555); contains InterPro domain DEAD_2; (InterPro:IPR010614); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain DNA repair helicase Rad3; (InterPro:IPR013020) -0.560120182411782 -6.4678240679647 4.86707202894371e-05 0.70645550500118 7.30382189742737 12.3034166765043 -0.560120182411782 0.0503961290077748
AT1G07790_at 7.65517514124101 7.63083500944655 7.06551421818105 6.94282659104008 7.79650432650737 7.22704622461165 8.72573206679708 8.64878324164783 7.89693098387572 8.14338047527816 7.8240183418758 7.84060601484806 7.30389039499707 7.3536201094528 8.04037233806775 7.75014797867214 7.14673858223062 6.4676232899989 7.5871901925592 0.200688489900969 0.195718090971249 0.195300138359896 0.195766643014471 0.190474945478089 0.199045028525052 0.200326936890613 0.197623643063373 0.227609549081076 0.198186505151731 0.196520072892446 0.193760125182062 0.192680811757721 0.208176143295999 0.190829933935711 0.192788714192625 0.210256633791694 0.205927459324524 0.197420857101611 1 1 + 2413052 2413465 2413269.455 2412977 2413705 + gene protein_coding_gene FALSE TRUE AT1G07790.1 histone H2B, putative Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.65855763866727 -6.46590647837393 4.87979419862527e-05 0.708253329988472 7.30179342453703 15.3824076100202 -0.65855763866727 0.101771496434484
AT4G30810_at 8.84946855614925 8.83918291622723 7.90832730084936 8.10456000531409 8.2936640932487 8.07750372892006 8.61985671612545 8.85163259012254 8.21026818641087 8.73331023309056 7.94694417950052 8.29806332896372 8.1695802991208 7.95176862090823 8.07959416206166 7.74449254994329 7.77025929350468 7.98292014818426 8.44316133724464 0.143339359737457 0.136407559301237 0.141977241965731 0.144339404772517 0.134874385881497 0.142754821972784 0.136155479708559 0.136572266780492 0.160200026841634 0.138004871685352 0.138843714967343 0.133646484647427 0.140911241744290 0.145075642256809 0.139998951977581 0.141925379296404 0.157273613439110 0.153222888255345 0.145628878904509 4 4|0 +|/ 15005090 15005982 15005684.4 15003457 15006218 + gene protein_coding_gene FALSE TRUE AT4G30810.1 SCPL29 (serine carboxypeptidase-like 29); serine carboxypeptidase similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to Serine carboxypeptidase II-2 precursor (CP-MII.2) [Contains: Serine carboxypeptidase II-2 chain A; Serine carboxypeptidase II-2 chain B] (GB:P55748); similar to Os06g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057009.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.581657587690846 -6.46405670022851 4.89210022744369e-05 0.709990506008903 7.29983610134288 16.6706241925473 -0.581657587690846 0.0645330163597138
AT1G17190_at 2.34755043387318 2.89883024051688 1.62107940541036 1.9811057916882 1.62598678356659 1.81962802489391 3.62990678901033 3.67673269921709 1.2161945937644 2.01986432235275 1.60079973063596 1.96962191037955 1.53205028066742 1.34395747079739 1.50442881920285 1.36888590665266 1.64413348303939 2.12690925573546 1.75268835573742 0.219850887396276 0.22244620909002 0.217365242144885 0.210760870557585 0.210760870557585 0.213628275566821 0.228938355054262 0.234105339635116 0.214541268135901 0.211330858784058 0.217836782802297 0.213231789751088 0.211383799639430 0.212807123453966 0.221103414538431 0.214625877884250 0.214583248042242 0.218941264946767 0.210760870557585 1 1|0 +|/ 5875558 5876292 5875929.7 5875343 5876538 + gene protein_coding_gene FALSE TRUE AT1G17190.1 ATGSTU26 (Arabidopsis thaliana Glutathione S-transferase (class tau) 26); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17180.1); similar to auxin-induced protein (clone pCNT107) - common tobacco (GB:S16636); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.701436219705314 -6.46387255201468 4.89332712893835e-05 0.710119632951534 7.29964121552369 4.09973457823391 -0.701436219705314 0.119045763617521
AT1G79280_at 7.57923214731592 7.25921349336963 7.19929304307031 7.16627675220146 6.92923307361399 6.95017305972382 7.32846998791286 7.5280905470863 7.17345660687003 7.29703404655768 6.30851332943715 6.56957796144602 6.45341089440526 6.72535612554541 6.31622995182423 6.50951629829614 6.55708216215298 6.23464476046502 7.31487257795483 0.182959211078104 0.185951467976696 0.189004652336146 0.186288774069594 0.186432461332570 0.199860153035234 0.186060740199993 0.183754878916806 0.188192263750350 0.193854845466171 0.185427328732074 0.188285423723584 0.197336820858818 0.187360871224112 0.192088837176571 0.182959211078104 0.192888651110743 0.182959211078104 0.184311112262693 1 1 - 29824090 29824579 29824295.273 29824069 29837702 - gene protein_coding_gene FALSE TRUE AT1G79280.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to Os02g0741500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048082.1); similar to PREDICTED: similar to translocated promoter re (GB:XP_422300.2); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Tetratricopeptide, MLP1/MLP2-like; (InterPro:IPR012929) -0.582501935058214 -6.45272216500737 4.96823498436795e-05 0.720940578581633 7.28783007611528 14.1030373526571 -0.582501935058214 0.0656214671170519
AT1G30970_at 5.3316697245956 5.15405038399124 5.86353613323984 5.76444304603288 5.73973868488467 5.8056725921525 5.19648483844773 4.16780700784864 3.15441903176268 4.46078306790805 4.77634607462566 4.65490263403392 4.67451782257667 4.57073595622244 4.81561697922588 4.96422015897999 5.17670874381036 4.49887368077182 3.88153383337563 0.214294874903279 0.214857269233671 0.223123190946014 0.219028501819085 0.218743033510912 0.226041842642530 0.226062217511645 0.222973684289595 0.255186951104019 0.230275192264211 0.224023949555056 0.220070036604948 0.220780231460528 0.218151226951751 0.215214730602948 0.214294874903279 0.220402405623537 0.218254626044784 0.214876008336027 1 1 - 11041434 11041894 11041675 11040262 11043732 - gene protein_coding_gene FALSE TRUE AT1G30970.1|AT1G30970.2 SUF4 (SUPPRESSOR OF FRIGIDA4); transcription factor|SUF4 (SUPPRESSOR OF FRIGIDA4) Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to Immunoglobulin/major histocompatibility complex; Zinc finger, BED-type predicted; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE94278.1); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to Immunoglobulin/major histocompatibility complex; Zinc finger, BED-type predicted; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE94278.1); contains domain SUBFAMILY NOT NAMED (PTHR23215:SF2); contains domain FAMILY NOT NAMED (PTHR23215) 0.882544785311028 6.45053158003688 4.98309504842705e-05 0.723047091526766 7.28550723369716 9.67729308504728 0.882544785311028 0.181822189053016
AT1G28560_at 2.88952821936048 2.73539440981660 2.94256936764517 2.88902703074897 2.90250893857735 2.96857067812118 3.69993506013815 3.7893807378743 2.91166933765656 3.48672837420846 2.55863249513379 2.93404530749122 2.67599362215924 2.91981370174349 2.58687947111947 2.87060996312121 2.7396497036604 2.89647687527419 4.09614611999269 0.240560616672447 0.235231356838930 0.241527474025702 0.246445896068248 0.249010203921391 0.245028321312136 0.24977267549158 0.240995217714841 0.240847834875397 0.243167358538287 0.238177550088417 0.2339672528198 0.2339672528198 0.236594816911036 0.243838767450613 0.244388697739584 0.249868234764054 0.239827064022374 0.246279846455209 1 1 - 10038191 10038928 10038499.182 10038024 10041439 - gene protein_coding_gene FALSE TRUE AT1G28560.1 SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2); DNA binding Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation. similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE85464.1); contains domain SUBFAMILY NOT NAMED (PTHR13421:SF7); contains domain FAMILY NOT NAMED (PTHR13421) -0.539154618923619 -6.44628257094554 5.01205451421525e-05 0.727198989467491 7.28099939625357 6.23758626515966 -0.539154618923619 0.0341706045047914
AT1G16840_at 8.78976829329833 9.00818794401498 8.785602424274 8.95990461489404 9.60174738959185 9.07106336678792 8.30748472113256 8.12053504830647 7.98513777129199 7.5357997264979 8.34184278059138 7.97585704175088 8.2514627268468 8.46428517068995 8.33537054198451 8.5030307266385 8.55516920734153 8.50681026109802 7.18636067075175 0.180554008805994 0.187193591418137 0.191707493123516 0.175720794486950 0.193480104237232 0.194003323371920 0.176189915160520 0.186093956253762 0.187590016805076 0.193282574771612 0.185303954091086 0.178776474698155 0.182853273331668 0.188188118788766 0.188251574394053 0.176994500344070 0.191833401474521 0.177625332051833 0.189417414060289 1 1 - 5763122 5763863 5763673.727 5762687 5764066 - gene protein_coding_gene FALSE TRUE AT1G16840.1|AT1G16840.2|AT1G16840.3|AT1G16840.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78890.1); similar to At1g16840/F17F16.27-related [Medicago truncatula] (GB:ABE84583.1) 0.672857307401345 6.44155442156920 5.04449158157442e-05 0.731854838654817 7.27597967364631 16.7984506986033 0.672857307401345 0.108716916203127
AT1G66090_at 3.79776367012127 3.91390625075694 5.10077271177549 4.91309143225531 3.90393801816226 3.79027835572976 1.53631631184951 2.48048072814437 3.98054959719662 2.83266247625375 3.54749794016368 4.22255688426122 2.59838486175769 3.84863049343216 3.33498973789134 2.66421525962515 2.91611333052231 3.60369237620818 2.64959915577752 0.245589896002236 0.244430567638417 0.256257618786412 0.250963940117937 0.239533179746114 0.238219952732628 0.252694365406389 0.249260879054478 0.250164797334179 0.249851325082468 0.242876143258871 0.238687178699664 0.238219952732628 0.243010140168570 0.238219952732628 0.238219952732628 0.257200571901732 0.24128090927224 0.246444707668417 1 1 + 24607654 24608211 24607975.455 24605809 24608426 + gene protein_coding_gene FALSE TRUE AT1G66090.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56540.1); similar to disease resistance-like protein [Brassica rapa] (GB:AAV74409.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain AAA ATPase; (InterPro:IPR003593) 0.841321545001385 6.44153931568044 5.04459557375146e-05 0.731854838654817 7.27596363020665 6.92770869496204 0.841321545001385 0.168945879710924
AT3G18690_at 5.44313629294143 5.83863886242994 5.18666886363399 5.1850446863139 6.3690367278176 5.41028538276672 3.20827374510208 3.37501169542943 4.29268582550698 3.17881986347449 4.51380535953364 4.52628704739987 4.69629729076664 5.17355701821225 4.29541701497908 4.36643265425716 3.45636567880143 4.45916123721514 3.77058324966668 0.250107018775742 0.250107018775742 0.250107018775742 0.250948245539218 0.262536865780515 0.254284668839014 0.258678462329344 0.258384991604389 0.25217968850641 0.250107018775742 0.250107018775742 0.251075245299973 0.250107018775742 0.250107018775742 0.250107018775742 0.250351790198443 0.254496645197943 0.255563033097993 0.255298299188978 3 3 - 6429813 6430322 6430000.182 6429540 6430520 - gene protein_coding_gene FALSE TRUE AT3G18690.1 MKS1 (MAP KINASE SUBSTRATE 1) Encodes a nuclear-localized member of a plant specific gene family involved in mediating responses to pathogens. Interacts with WRKY transcriptional regulators. Identical to Protein MKS1 (Protein MAP kinase 4 substrate 1) (MKS1) [Arabidopsis Thaliana] (GB:Q8LGD5;GB:Q9LSA8); similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT1G21326.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28841.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.8800230996268 6.43297612794413 5.10391751510234e-05 0.740374274740745 7.26686280330652 9.0936512281519 0.8800230996268 0.181784069269385
AT2G32030_at 3.09218168451348 2.94322086651251 2.96349126680223 3.23339641588005 3.29687652592237 3.02873166168329 1.4446636407329 1.21950208359285 2.09921514741844 1.87422251003897 2.09633100978414 2.50409234428173 1.79953244128563 1.80299968462392 1.76885763420625 1.45915051757332 1.98600957310008 2.37609193668429 1.16577850800801 0.244161821995658 0.252874554571592 0.248472011050540 0.248842248482881 0.255962566446106 0.253966346933340 0.247710729476537 0.252880647771199 0.250232790204521 0.249423548475497 0.245973112021623 0.253514581283165 0.244422791858720 0.249523575722683 0.254597006789074 0.245997510116508 0.253398017278135 0.249482476465428 0.246889360618502 2 2 - 13639755 13640276 13640069.818 13639545 13640412 - gene protein_coding_gene FALSE TRUE AT2G32030.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G32020.1); similar to Os03g0794200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051537.1); similar to Os03g0794300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051538.1); similar to putative acetyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAO37986.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.608396493135666 6.4266104400073 5.14850001210713e-05 0.746789926756139 7.26008946902207 4.49636061712874 0.608396493135666 0.0807328310411742
AT4G24610_at 3.42424410608338 3.42010260889967 3.44600444636228 3.22423007796186 3.88433414092205 3.96000914475062 3.18072600922287 2.86328386929765 2.56840999387177 2.59001508517921 3.71639668809556 3.39845347771824 2.77267004246267 3.3185170153555 4.24064359618059 3.53160090108906 3.78924383120369 3.39666047623315 3.11509779347181 0.239525824259793 0.239525824259793 0.240038822886166 0.244203649121598 0.251108160792808 0.259898140815986 0.243166939886503 0.242527536718958 0.272018141450829 0.244046271176538 0.240499979538205 0.24008747430999 0.250200770920904 0.239525824259793 0.245144548237308 0.244837734263091 0.243517973915840 0.256508374063091 0.264954892005578 4 4|0 -|/ 12700884 12701837 12701413.3 12700607 12707909 - gene protein_coding_gene FALSE TRUE AT4G24610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65440.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48310.1); similar to Os02g0760200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048187.1); similar to Os02g0198400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046207.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19403.1); contains domain Ribosomal protein S5 domain 2-like (SSF54211) 0.584618800079011 6.42469853461468 5.16197144428578e-05 0.74869233827921 7.25805379965761 6.5645489059625 0.584618800079011 0.0682847566825608
AT3G55080_at 5.74060134656166 5.60824826826049 4.74228597196227 4.78626018344928 5.35721639163129 5.12508067935667 5.45220202030157 5.37935362527503 5.72359511567715 6.04606352610265 5.19109624874386 5.73374009737839 5.32383555995913 5.47832984424028 5.81308585149051 5.10791456827624 4.99524623188616 5.12317895430257 5.96200782595467 0.180622336190609 0.166193568504277 0.17365606440944 0.167621004702329 0.179107168717864 0.192265416483232 0.178079196684013 0.170255858959835 0.188102785313277 0.169564605956889 0.171105814571346 0.166294291856771 0.167639058244514 0.168627827587072 0.175843894476735 0.169531861390225 0.171071142108108 0.169415302916819 0.171094013156920 3 3|0 -|/ 20422460 20423603 20422943.8 20422380 20426911 - gene protein_coding_gene FALSE TRUE AT3G55080.1|AT3G55080.2 SET domain-containing protein similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to Nuclear protein SET [Medicago truncatula] (GB:ABE91361.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.553571289104998 -6.42130688850202 5.18596218821636e-05 0.75212009615702 7.25444108959652 10.9020855152395 -0.553571289104998 0.0485309416201626
AT4G38430_at 7.89969982622549 7.99859061486868 6.51621539248217 6.68003482584465 7.06810496491958 7.68266824625631 7.88405003073737 8.29555134640034 8.58035011371987 8.76551728882849 8.34664267430974 8.5542397757282 8.06125609650899 8.25561550578572 8.37744480562516 8.36136078583213 8.00503026718497 8.13410478979321 8.73266992876358 0.144880672720001 0.149334171876095 0.164042701944334 0.159496361172567 0.144143566504207 0.146921528846495 0.143854578268361 0.153970894415995 0.149853432905899 0.145796645285050 0.145249411722490 0.144361838565165 0.154300098338964 0.151127531309681 0.150995278701598 0.147962379968639 0.151338659153293 0.147295557390247 0.145946112928678 4 4 + 17988017 17988520 17988296.364 17986460 17988801 + gene protein_coding_gene FALSE TRUE AT4G38430.1 ATROPGEF1/ROPGEF1 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor/ protein binding Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity. Identical to Rop guanine nucleotide exchange factor 1 (RopGEF1) (Kinase partner protein-like) (KPP-like) (ROPGEF1) [Arabidopsis Thaliana] (GB:Q93ZY2;GB:Q9SVE2); similar to ATROPGEF7/ROPGEF7 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT5G02010.1); similar to Os01g0849100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044808.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79161.1); similar to Os09g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063832.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.73180051834513 -6.42043109807071 5.19217644851362e-05 0.752969428563446 7.25350790194998 15.9805182133168 -0.73180051834513 0.132207143688497
AT2G34357_at 5.42367716531416 5.82234718846729 5.30158540054535 5.39452015914314 4.67163244419890 4.51854407957996 5.92200056062796 5.53188462177851 4.29292865327737 4.63207173364967 3.78246095867455 3.92673228766081 3.98734438335781 3.67098437892783 4.21283283600963 4.18665892553247 4.35805100743289 3.70370994953721 4.81784131635338 0.243798862704479 0.258507893283692 0.240620709560869 0.240888286759753 0.254968782699798 0.256559760392562 0.245842879586712 0.247623839020739 0.276083831029383 0.244942998194236 0.238219684210408 0.242147386359997 0.247654872301429 0.244840446238251 0.246728584117971 0.239622342065007 0.250200616676651 0.248468589278301 0.238219684210408 2 0|2 /|+ 14512058 14512542 14512272 14506315 14512806 + gene protein_coding_gene FALSE TRUE AT2G34357.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G23540.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57583.1); similar to Os02g0782100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048314.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Domain of unknown function, NUC173; (InterPro:IPR012978) -0.652878628357649 -6.4191716223462 5.20112716748555e-05 0.75421545055708 7.25216565712145 9.60304599011614 -0.652878628357649 0.101381257811252
AT3G12320_at 10.0628417388629 10.2690892275955 10.3037355785745 10.3539192860541 10.5944024001044 10.3802758834970 11.4616475533558 11.5334561134162 11.1280678985171 11.2497310227929 10.6378832555497 10.4884099535289 10.6786550655698 10.4435029957830 10.0179166191339 11.0458277906993 10.6291172391340 10.2526367448687 11.2860583576247 0.0925430414273347 0.0888002093217087 0.0978059527671788 0.0922881867424908 0.0894385236632487 0.093373368068681 0.0917039318908344 0.0888003864833465 0.106333718909992 0.0877852278019057 0.0908950538946802 0.0883866995635356 0.0905474871135287 0.088526390739324 0.093649601319681 0.0881041962054762 0.0993182554337224 0.0968032941724795 0.088056968520003 3 3 + 3924259 3925232 3924774.182 3923742 3925472 + gene protein_coding_gene FALSE TRUE AT3G12320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06980.1); similar to ACI112 [Lycopersicon esculentum] (GB:AAY97870.1) -0.56035871143082 -6.41777107702516 5.21109982871837e-05 0.755609475164163 7.25067275879789 21.4926857065217 -0.56035871143082 0.0536366356220775
AT1G14140_at 5.95133956041894 5.7119711973118 4.92449935385807 4.67242645864288 5.48590384306837 5.00147303612591 6.0891596654032 5.9077394046518 5.55439460143138 5.42179331383131 4.95587742162592 5.46407234382252 4.87392903657854 5.21256253310985 4.89647023139915 5.12263716022155 5.5454074754196 5.2847720460231 5.85955932920484 0.25327579029836 0.253867765058626 0.25257714086472 0.258206069143369 0.251725744902102 0.251816951098941 0.251756789375353 0.258572654252671 0.266400108225527 0.249657420782511 0.252617730843285 0.251275736181111 0.251549573658241 0.256974078250693 0.250834341657737 0.249657420782511 0.258564836566195 0.253751528358273 0.252735308447799 1 1 - 4838129 4839257 4838526.364 4837924 4839630 - gene protein_coding_gene FALSE TRUE AT1G14140.1 mitochondrial substrate carrier family protein similar to ATUCP2 (UNCOUPLING PROTEIN 2), oxidative phosphorylation uncoupler [Arabidopsis thaliana] (TAIR:AT5G58970.1); similar to Mitochondrial carrier protein [Solanum demissum] (GB:AAT66766.2); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) -0.668213250576725 -6.41732768549622 5.21426128779755e-05 0.756015744117766 7.2502000609564 10.8587549545256 -0.668213250576725 0.107854085797025
AT1G52340_at 6.86760891118831 7.00004024594052 5.70161590721475 5.82145606893951 7.00181015948824 5.9813964245233 7.8533863220425 7.8266143050634 8.20853580347091 7.79383839931635 7.54737049963641 7.79184272160721 7.74829545506228 7.72994816106636 7.62820254067964 7.73646769363901 6.89479555442656 7.38379151233704 8.1103832158051 0.191496734002499 0.177208977001849 0.193250699387777 0.202821542572771 0.176813378031103 0.191664209979698 0.185175950085935 0.184296271184984 0.194378742479128 0.184563634437301 0.181538236802726 0.180333301463966 0.184949975589291 0.190486916873815 0.186900627028597 0.176249771466072 0.190918158938035 0.183320662648241 0.181965896715176 1 1 - 19493670 19494174 19493875.545 19493463 19495317 - gene protein_coding_gene FALSE TRUE AT1G52340.1 ABA2 (ABA DEFICIENT 2); oxidoreductase Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G51680.1); similar to short-chain dehydrogenase/reductase [Solanum tuberosum] (GB:AAT75153.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.870169672453936 -6.41700614973561 5.21655517839614e-05 0.756296169763872 7.24985725235448 14.5543285798022 -0.870169672453936 0.179331785757950
AT4G30400_at 4.10678850564263 4.35940924823263 3.50737266703755 3.74398168298560 3.74976358266293 4.24904346565355 5.32725481617703 5.47835784370628 6.13278305861024 5.63973552387857 5.55778836653264 5.81629583518732 5.18477996575567 5.63145900484427 5.59759533809928 5.46735293443936 5.08702666929533 5.46547368619967 5.65461128247304 0.214557404967125 0.214439991532939 0.224723115540893 0.214665796878415 0.21143059008238 0.210566546429513 0.207380604050467 0.215878021877809 0.220340720598242 0.216101361274271 0.207336549737377 0.210992738909023 0.207336549737377 0.207336549737377 0.210349015060705 0.207336549737377 0.213204819984858 0.217316323035475 0.209449507849826 4 4 + 14868051 14868454 14868250 14866952 14868634 + gene protein_coding_gene FALSE TRUE AT4G30400.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL4K (RING-H2 finger protein ATL13) (ATL4K) [Arabidopsis Thaliana] (GB:Q940Q4;GB:Q9M0C0); similar to MEE16 (maternal effect embryo arrest 16), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G18650.1); similar to RING finger 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36516.1); similar to Os08g0445000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061924.1); similar to Os02g0790600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048356.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.66924203356558 -6.41585283061051 5.22479204437217e-05 0.757438102672634 7.24862748646579 9.95775385819468 -0.66924203356558 0.108337415553407
AT3G30560_at 2.26423911577786 2.49671281288048 2.26511163823945 2.59926160598974 1.43897121949381 1.86166002511505 2.14629246406874 2.22326601174535 3.68914360532402 3.45745930044506 1.95312276455665 2.39281720982133 2.66293956431835 2.49485300384797 2.01775302642055 2.90974869918770 2.69907355484799 3.05990963311231 3.62896120675273 0.268431366435682 0.278182439478956 0.282351417679691 0.287061361429875 0.270406947646218 0.278312426557505 0.268431366435682 0.268431366435682 0.296225582324381 0.285522847013941 0.268431366435682 0.278793571443100 0.268431366435682 0.268431366435682 0.287163260192026 0.279326137468705 0.268431366435682 0.268431366435682 0.268431366435682 3 3 + 12159491 12159868 12159685 12154428 12160021 + gene protein_coding_gene FALSE TRUE AT3G30560.1 similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) -0.654727000534213 -6.41319547455644 5.24382360974686e-05 0.760144670468905 7.24579313816058 5.21975530475783 -0.654727000534213 0.102423068228651
AT3G01670_at 5.17686440280467 5.5754137797979 4.06622700644973 3.98610655105188 4.15961245397184 4.80210217093738 5.92579626158062 6.11918948806879 6.08541305326468 5.6649738632901 6.50832492243741 7.22509117090073 5.72312259152503 5.99661649915993 6.42641412229564 6.379822607254 4.68932812389317 5.41065615813127 6.49119617369665 0.223472326615269 0.221640419110353 0.248922476172627 0.232239816455209 0.224802452341346 0.228408987951509 0.225655018500642 0.221804225196161 0.227876334611041 0.224260835118079 0.221048511874272 0.220510268909419 0.226978868364641 0.224918980774255 0.233424742106292 0.218508352968105 0.23239271125296 0.226122288302958 0.21811455041715 3 3 + 249674 250242 249979 247241 250477 + gene protein_coding_gene FALSE TRUE AT3G01670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01680.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32254.1) -0.74070480488056 -6.41267689660938 5.2475462307367e-05 0.760631826145284 7.24523988197098 11.0391388749329 -0.74070480488056 0.135762996250278
AT3G47510_at 6.41312840160651 6.2230063664582 7.08457764886468 7.15305712575897 7.52758883708366 7.17897250980902 6.99994764549877 7.07400339585089 7.20480381602794 7.31638022452496 8.47280929210551 7.47242037930824 7.84910625322233 7.93418702327253 8.0080043251766 7.90625552992602 8.14029762142867 7.98889493205076 7.54015555776514 0.130105259990713 0.127383183737548 0.130657143686465 0.126968173378140 0.130458188997353 0.127871278001624 0.121309123032063 0.123476872468155 0.127840099691678 0.126032394352671 0.127907505089296 0.123516964068886 0.123878248707528 0.129506779505593 0.122450376366236 0.121278890157406 0.12863928717474 0.124823756306284 0.129337415860386 3 3|0 +|/ 17522162 17522576 17522470.5 17522084 17522801 + gene protein_coding_gene FALSE TRUE AT3G47510.1 unknown protein 0.588122315740405 6.41159442261385 5.25532590927721e-05 0.761706937290639 7.24408487517628 14.6194236342 0.588122315740405 0.0709003552765738
AT2G01590_at 7.79688414680489 7.84271094305855 7.16105006564414 7.08960624383636 7.8172057983884 7.4269573996962 9.02802224753895 9.09046283812981 8.74169476870214 8.74273930474193 8.6409360091752 8.73066621947672 8.52534832333693 8.83634035551002 8.64461053094408 8.8994302579127 8.31402164824933 8.3777597828384 8.6995605634759 0.137119478004658 0.128047035904706 0.137520012701665 0.137779707998614 0.1310448076378 0.149680185467363 0.137320572539716 0.140009896513809 0.136317171920835 0.132453436824373 0.125353814686245 0.125353814686245 0.129311646204326 0.138564674424193 0.125353814686245 0.127784684861571 0.139096052999512 0.130347346742575 0.130910191775994 2 2 + 266674 267344 266921.727 266647 267797 + gene protein_coding_gene FALSE TRUE AT2G01590.1 unknown protein -0.586337119184003 -6.41085060895224 5.26067881227174e-05 0.762430180262543 7.2432911068633 16.5811811370057 -0.586337119184003 0.069952829755951
AT4G18280_at 7.5920283995637 7.74782690402132 8.01953335948407 8.28357440229167 8.80089140779941 8.56310897167377 8.29351772237374 8.6677125120408 7.97508801579368 7.85718617694993 9.12880395291353 8.6094911480472 9.16874248714618 9.18555494106348 7.9865939145998 8.8865622997236 8.66921243758802 8.7118490808606 7.77332248292547 0.160776962246593 0.152001416828067 0.167565871570727 0.152732431360892 0.161652547979827 0.167108366319225 0.159461872886999 0.154678219035477 0.161851150843691 0.153446511917315 0.150273285710278 0.153975348434337 0.147909480711811 0.154378963508608 0.160442599167272 0.155071177745145 0.162612801358257 0.150802359611306 0.151608342982318 4 4 + 10104108 10104496 10104301.182 10104007 10104744 + gene protein_coding_gene FALSE TRUE AT4G18280.1 glycine-rich cell wall protein-related 0.633162354166055 6.40741349277037 5.28549015810785e-05 0.76597323371299 7.23962194402555 16.5769659638890 0.633162354166055 0.0932816125614483
AT3G12080_at 8.98492668056815 8.92857209634011 8.41585991175974 8.09768468881741 8.58621600806596 8.24542021754802 8.75366656452276 8.3427560590296 8.33338838423708 9.04229185371338 7.52232237496516 8.06713180038391 7.72118068809279 7.61178594202092 8.22069692075652 8.3848272650015 8.09227311603665 7.68091916333567 9.1169920568006 0.143953246288688 0.143211201596649 0.147017037833778 0.1480186630839 0.143211201596649 0.147347110317536 0.147848594616486 0.145758235355374 0.162792703656559 0.145458690345305 0.171750935342333 0.145256978632098 0.154362727573080 0.156818737641409 0.150552942950265 0.145736200040218 0.148137041932691 0.153211865200644 0.145035694325201 3 3 + 3851226 3851935 3851514.455 3847798 3852144 + gene protein_coding_gene FALSE TRUE AT3G12080.1|AT3G12080.2 EMB2738 (EMBRYO DEFECTIVE 2738); GTP binding|EMB2738 (EMBRYO DEFECTIVE 2738) similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G39960.1); similar to small GTP-binding protein domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94923.2); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain GTP-binding; (InterPro:IPR005289) -0.667216874830129 -6.404585876751 5.30599565849951e-05 0.768891830873165 7.23660193880133 16.9161542402020 -0.667216874830129 0.107989511079191
AT1G61740_at 8.96107622721637 8.83875608334509 9.17698348276207 9.22482505888916 10.0091021730110 9.6124033056105 9.46345138185345 9.15778289102198 9.48337107541074 8.91115817262065 10.2275199658303 9.75580893112858 10.0337990788049 9.8208366723882 9.80395446909368 10.3376379595804 10.0642579452203 9.98053037117774 9.06992927833738 0.140910661853404 0.131972983352898 0.142919651807572 0.137137296550852 0.134561476979211 0.135932167351906 0.132959754897613 0.132838923174393 0.139717699440711 0.150040279089738 0.133602999480435 0.130450494173452 0.132549373431361 0.136548721825425 0.132959879099413 0.133866177831088 0.145761752390119 0.136621328057094 0.143115567256010 1 1|0 -|/ 22802126 22802782 22802485.7 22801734 22804738 - gene protein_coding_gene FALSE TRUE AT1G61740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11540.1); similar to membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53257.1); similar to Os01g0786800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044474.1); contains InterPro domain Protein of unknown function DUF81; (InterPro:IPR002781) 0.624392762286191 6.40036429335136 5.33676867482884e-05 0.773297780982699 7.23209061558982 18.884478916935 0.624392762286191 0.0895972454468821
AT1G70780_at 10.5329950339554 10.6265979636287 10.9705190515048 10.7057915213608 10.8407024701944 10.6579427063161 10.2241608699181 10.0508176423177 10.3507928141663 10.6516875389432 11.5080863643339 11.5645047485729 11.1806071679554 10.8946552157032 11.3388596402935 11.6437890776349 11.0203739389846 11.5924811288216 10.8698626191808 0.101064914094093 0.0870850941723565 0.0865546602527241 0.0878078799098916 0.0847603988092786 0.0877758120931147 0.0869137503780451 0.0937960215854893 0.114126815154022 0.0838607300001528 0.0857768735192111 0.0848993497124187 0.0869664591646073 0.0922183670299254 0.0878089582198493 0.0851682957924527 0.0920649860035193 0.0888638101274503 0.0838607300001528 1 1|0 -|/ 26699131 26699565 26699384.1 26698845 26700041 - gene protein_coding_gene FALSE TRUE AT1G70780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23150.1); similar to putative senescence-associated protein [Pisum sativum] (GB:BAB33412.1) 0.576950698039894 6.39770337109876 5.35626345778946e-05 0.776069012399115 7.22924552362064 21.5597078995916 0.576950698039894 0.0652788203499992
AT2G42360_at 3.75895833248103 4.10813181322112 4.55035298480315 4.8484294706738 2.84260198977794 2.73410199746953 1.44866003139695 1.43966112451740 1.27976412121481 1.39935224942745 1.55034484664860 1.49830751675764 1.35697090065100 1.24668497861487 1.69998134389099 1.43654228826591 2.00483940003931 1.20334353090776 1.34031960398729 0.317301473911957 0.315797366401823 0.328545535860894 0.320170226344044 0.311959910596876 0.311626730710417 0.313292878821596 0.304861506084902 0.319074649844042 0.304460393600125 0.303826010327581 0.303826010327581 0.30977659220165 0.318529768309376 0.311198169032660 0.303826010327581 0.308472693058695 0.303826010327581 0.303826010327581 2 2 + 17648101 17648579 17648337.636 17647876 17648868 + gene protein_coding_gene FALSE TRUE AT2G42360.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2L (ATL2L) [Arabidopsis Thaliana] (GB:Q9SLC3); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G42350.1); similar to ring-H2 zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45455.1); similar to Os01g0755700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044285.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.607416822227904 6.39669688064423 5.36365719346654e-05 0.777086654189432 7.22816906017784 4.63608163917521 0.607416822227904 0.081652637086431
AT3G23840_at 4.97208317023559 4.64509462398568 3.79760845223385 3.68202183507154 3.32165387877093 4.01341171896543 4.53413105421214 4.44299690517844 5.73596603186182 4.88863469687452 4.92128144271344 5.29892003492754 4.31185045928906 4.80894500617995 4.85599752542297 4.55598114997853 4.47649432300241 4.8824810609813 5.25045416348633 0.201512986703197 0.209743786664066 0.210305410630222 0.204950547621369 0.207360514560699 0.211940353619489 0.208013508418753 0.201958396036289 0.213842086017138 0.201512986703197 0.205403727297147 0.202499766119582 0.204841577732107 0.201512986703197 0.20653325154206 0.202894203172007 0.203564778788816 0.213024197129143 0.213771316155229 3 3 + 8612091 8612538 8612266.364 8611133 8612697 + gene protein_coding_gene FALSE TRUE AT3G23840.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT4G13840.1); similar to Os04g0611200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053836.1); similar to orf [Zea mays] (GB:CAA61258.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.736296777952425 -6.39655912710586 5.36466998842922e-05 0.777179741223742 7.22802171648757 9.20396462452476 -0.736296777952425 0.134840138348867
AT3G29090_at 7.22716054487458 7.31881448506302 7.0017116673562 6.99589864403318 6.9326939835398 7.11941540678664 7.57495341989308 7.51761286729956 6.83822747302977 7.07472416162956 5.8210397650827 6.05263495631204 6.38884302281892 6.27584730420724 6.10598111906539 6.38316177741576 6.73811302526945 6.17562418489009 6.85105995461094 0.209389210433191 0.206460228875377 0.206592195392057 0.202312495751342 0.206173240813955 0.208717435885891 0.210564861807339 0.207511833237402 0.224430123238627 0.206816758546970 0.204361265313873 0.205802712184508 0.211464795792908 0.202273491010596 0.209242717375076 0.202273491010596 0.206110138333518 0.214963700531798 0.202273491010596 3 3|0 +|/ 11075691 11076512 11076129.222 11074942 11076715 + gene protein_coding_gene FALSE TRUE AT3G29090.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G19730.1); similar to Pectinesterase [Medicago truncatula] (GB:ABE86764.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.537943477947167 -6.39368700650559 5.38583316245893e-05 0.7801917919138 7.22494891543208 13.7930290477588 -0.537943477947167 0.0373521824833575
AT4G38520_at 7.9893324301316 7.97856889553951 7.89790094942678 8.12145571462233 8.31515852421024 8.06321559905487 7.9335990792274 7.77658303542241 8.11139294960554 7.68715645929349 8.87553973790868 9.03667709146385 8.70999625554215 8.97669151203763 8.9837680833145 9.05515980519344 8.39269002444084 8.76990471189904 7.84235399564248 0.118247543555232 0.116145003037972 0.124371424251946 0.11826185330371 0.115993450081159 0.128439667943022 0.124260368528645 0.119769381738739 0.123120054338279 0.126937188611137 0.119364542278895 0.115368972913017 0.118817946509198 0.119119831063235 0.116964759929565 0.115368972913017 0.123415577299341 0.122488759689742 0.123786987053964 4 4|0 -|/ 18016050 18016728 18016406.8 18015730 18018300 - gene protein_coding_gene FALSE TRUE AT4G38520.1|AT4G38520.2 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2C homolog [Mesembryanthemum crystallinum] (GB:AAD11430.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.57483205231309 6.39183959776007 5.39949298162592e-05 0.782116558388515 7.22297168977264 16.3746540472405 0.57483205231309 0.0643386105901456
AT2G22570_at 5.59561679952453 5.75636655601919 6.3221051423439 6.449001104881 5.96043014293878 5.79790382486312 4.34430794571714 4.20264224724579 3.53454974416241 4.27972368067189 3.80476031747532 3.80485765864463 3.47292154175664 4.1664098045793 3.72334359460765 3.74346036785484 4.51317255406907 4.18050338837140 4.10795224808043 0.254467716452125 0.252637014645181 0.250394822675907 0.254867477816357 0.253117145532006 0.257211733471404 0.255366286316419 0.261565263808072 0.26853734611261 0.259660709293002 0.253748913605234 0.253756438421202 0.261664072531131 0.256302324420662 0.254317326318428 0.250394822675907 0.260278437837627 0.250394822675907 0.250394822675907 2 0|2 /|- 9596883 9597460 9597188.444 9596515 9597959 - gene protein_coding_gene FALSE TRUE AT2G22570.1|AT2G22570.2 isochorismatase hydrolase family protein similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)|similar to unknown [Lycopersicon esculentum] (GB:AAK84475.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868) 0.554865047872491 6.3901821460048 5.41177981484735e-05 0.78384218838249 7.22119727951194 9.50367365930406 0.554865047872491 0.0514607203230198
AT3G22370_at 9.557339590471 9.81633218114098 10.5748911363306 10.5307890674801 10.3432262860267 9.73020758596837 10.3607094629287 10.1497440882618 8.4002225395434 8.8919691287058 9.62463468311855 9.38247753043278 9.87819049854119 9.4069334539232 9.01786494955175 9.98238857695077 10.1893480196304 9.76207313084798 8.4539744663939 0.126455494646239 0.117232922901192 0.122945732758185 0.126611098944166 0.119102061329754 0.119495873113697 0.117232922901192 0.120318990234602 0.138065762865677 0.125033388142618 0.125435187120204 0.117232922901192 0.123122212742235 0.127934725254899 0.129777742383382 0.117232922901192 0.127634219011055 0.120136352057998 0.137354951021039 3 3 + 7907451 7908395 7908085.091 7906800 7908747 + gene protein_coding_gene FALSE TRUE AT3G22370.1 AOX1A (alternative oxidase 1A); alternative oxidase Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. Identical to Alternative oxidase 1a, mitochondrial precursor (EC 1.-.-.-) (AOX1A) [Arabidopsis Thaliana] (GB:Q39219;GB:O23914;GB:P93734); similar to AOX1B (alternative oxidase 1B), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G22360.1); similar to oxidase (GB:AAA32870.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) 0.6985903327055 6.38973107955263 5.41512878783845e-05 0.784273102342643 7.22071430323557 19.2516770416205 0.6985903327055 0.121054238553147
AT2G38180_at 6.79307812862647 6.05297841666076 6.76982294275226 6.46388264173507 7.74717018399533 7.417942913036 8.00810138611527 7.60560261838825 6.89106377761179 8.10789763702972 5.14426457614737 4.72403388476843 5.37418523637787 5.41732914673761 4.89379128025972 5.09841374160851 6.16561049320703 5.27133573592944 5.67772404225102 0.221318635715414 0.217677677004921 0.217677677004921 0.223232934557108 0.225522989061382 0.226558023188411 0.224907339592124 0.221284114550572 0.245013960112956 0.222497347881897 0.233957106875306 0.219765168075685 0.221631081424464 0.223709726900184 0.235566803240996 0.219899759261238 0.225143232178619 0.218803467942191 0.231880174307380 2 2|0 +|/ 16005059 16005725 16005425.9 16004192 16005984 + gene protein_coding_gene FALSE TRUE AT2G38180.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G11210.1); similar to CPRD49 [Vigna unguiculata] (GB:BAB33036.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.823171720409684 -6.38836188160314 5.42530808384276e-05 0.785693116702109 7.21924803382134 13.1839969026688 -0.823171720409684 0.165241642912563
AT3G03270_at 4.34698441204519 4.61916267289166 4.68393433758992 4.87243964854983 4.64928466666667 4.97587671040917 4.22556533407729 4.57539900537115 4.61354593308922 3.88620903135714 5.35034577209407 5.60626165884998 4.07042912373517 4.43235212146113 5.75288371305846 5.08182941198041 4.39302213736 5.14110847755909 3.60828253955936 0.219948923975054 0.220468195098854 0.22113337003195 0.221762103024768 0.218214637194151 0.223378364465594 0.220209780358809 0.218084689521308 0.238118582525605 0.229463717381559 0.217637592189355 0.222987665537502 0.219852866565868 0.231869866795721 0.226970247296869 0.219640430005112 0.216202541354439 0.218672149211689 0.219303247073115 3 3|0 -|/ 761409 763030 762539.4 761317 763122 - gene protein_coding_gene FALSE TRUE AT3G03270.1|AT3G03270.2 universal stress protein (USP) family protein / early nodulin ENOD18 family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G53990.1); similar to Universal stress protein (Usp) [Medicago truncatula] (GB:ABE83259.1); contains InterPro domain UspA; (InterPro:IPR006016)|similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G53990.1); similar to Universal stress protein (Usp) [Medicago truncatula] (GB:ABE83259.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.648061267692315 6.38725598605385 5.43354481224695e-05 0.786831624261481 7.21806350316851 9.12585162512387 0.648061267692315 0.100708480036182
AT1G69570_at 5.41736643038964 6.0180318904522 4.87124019607905 5.04407111401 5.13587774806747 4.08427170106843 6.18258685117809 6.51444531943913 5.64731513619605 5.08773278485024 4.5239821002583 4.42786247221566 4.77180151719433 5.13176749558405 3.83295940550046 5.30969944471155 4.82463500004213 4.22941653506416 5.37784277234893 0.233549186543902 0.233572952692266 0.235906439007046 0.230676233659199 0.235377707237877 0.257195222478268 0.247832665935015 0.245433730424294 0.241487628561731 0.232106340543741 0.233189859415720 0.233377208958428 0.237874333048731 0.237861687148722 0.241347682376603 0.240193622665857 0.274098816179195 0.243342199668661 0.234336737555233 1 1 - 26165466 26165989 26165758.273 26165191 26167159 - gene protein_coding_gene FALSE TRUE AT1G69570.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF1.10 (AtDOF1.10) (H-protein promoter- binding factor 2b) (DOF1.10) [Arabidopsis Thaliana] (GB:Q9SEZ3;GB:O81601); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26790.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE80370.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.994345250601135 -6.38475066064914 5.45225406958568e-05 0.789486389276006 7.21537927242563 10.4097259367287 -0.994345250601135 0.219354882058809
AT2G38050_at 5.93401453399664 5.96384956916360 5.79210994196629 5.95205960221168 6.62012510848793 6.5145178387 5.18320524944613 5.32101343164496 5.17889209626518 5.67592395002081 6.08121845442903 6.26326036992576 5.99511453864415 6.10671880898022 5.70227436221438 6.5908144151362 5.89168792866022 5.87942398774444 5.94609809212788 0.227616408422243 0.236539875257647 0.228175148386622 0.228201040333756 0.240756207777747 0.243898335437702 0.234863652861709 0.227255427472497 0.244723894579663 0.232374798710551 0.226842852044268 0.232481298043259 0.228379360084928 0.232579380512997 0.234923639123864 0.228330819785752 0.253780570723701 0.231714051601248 0.225445876695078 2 2 - 15928381 15929006 15928636.636 15928214 15929391 - gene protein_coding_gene FALSE TRUE AT2G38050.1 DET2 (DE-ETIOLATED 2) Similar to mammalian steroid-5-alpha-reductase. Involved in the brassinolide biosynthetic pathway. Identical to Probable steroid reductase DET2 (EC 1.3.99.-) (DET2) [Arabidopsis Thaliana] (GB:Q38944;GB:Q9SH83); similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT5G16010.1); similar to steroid 5-alpha-reductase [Gossypium hirsutum] (GB:AAZ83346.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.541345911095411 6.38451987992856 5.45398095809555e-05 0.789681902922655 7.2151319583708 11.7421713199629 0.541345911095411 0.0411775612997362
AT2G21430_at 4.4919275146894 5.01402983608266 5.27197155593377 5.18541573361927 5.09811737035874 5.39851696535889 4.32833961842471 4.06191094367977 3.87863942927905 3.77275894056587 4.35433013874513 4.14525088702089 4.66478812991751 4.46170111328947 4.32781606230785 4.4809124618464 4.65621464161895 4.76000052320519 3.99799796368702 0.276443082632162 0.274675527083627 0.273166458557204 0.283710756082715 0.282618889943256 0.287400600477918 0.268623997639669 0.26654207027604 0.282059988216911 0.265894082084180 0.27005345389201 0.274241194765783 0.267815686222588 0.266052190636497 0.274396831723999 0.267044950322721 0.282690203709208 0.277110645022988 0.285999466048634 2 2 - 9179185 9179765 9179416.364 9178965 9180419 - gene protein_coding_gene FALSE TRUE AT2G21430.1 cysteine proteinase A494, putative / thiol protease, putative Identical to Probable cysteine proteinase A494 precursor (EC 3.4.22.-) [Arabidopsis Thaliana] (GB:P43295;GB:Q9SJT5); similar to RD19 (RESPONSIVE TO DEHYDRATION 19), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G39090.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60581.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.681349030832571 6.37457300181879 5.52897082523667e-05 0.800484396077766 7.20446393146467 9.03853312022902 0.681349030832571 0.114961829574591
AT1G75800_at 9.95238372687825 10.0272760814202 9.8171575313987 9.8760392481531 10.8867910660421 10.3505117546203 9.5802212914345 9.47240145698735 8.7303065600537 8.88165707846598 10.1381767148817 9.8702971020607 10.1315571908486 9.94699212295474 9.70414634583156 9.54407714097724 9.45230114816176 9.47243028549186 9.34348799468837 0.11497831321546 0.114749350530008 0.110688110049546 0.110034131941421 0.120570817779405 0.122992198684629 0.112184846050674 0.118215922731887 0.153364060251303 0.121135083182556 0.117681676067248 0.110650512835598 0.114249652788318 0.113929326938332 0.110238720878735 0.114646251289048 0.127841060574263 0.128564499647770 0.111220976321029 1 1 + 28463029 28464074 28463488.727 28462443 28464515 + gene protein_coding_gene FALSE TRUE AT1G75800.1 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G20030.2); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.63595048643591 6.37220792419079 5.54696314325994e-05 0.803033854249742 7.20192492657746 19.3791716700187 0.63595048643591 0.0960876632327589
AT1G28610_at 3.7835166147421 3.76300296971303 4.87822372486741 4.9524742411309 4.65042118839135 4.61950951393974 5.6167667720175 5.50040065016956 3.34277548670359 4.82265969701592 4.68630990939518 4.70854170278445 4.78926575455838 5.16887152567229 4.66149843564659 5.35030257951014 5.49742788833035 4.85072211631039 3.9073400072187 0.23074403267629 0.227790552350247 0.224451062806267 0.229715828485979 0.226748254449631 0.24009650883334 0.229227034499783 0.233539854479806 0.241840703617966 0.230444730490146 0.223601429528432 0.225487782112468 0.234814456257031 0.230704687627491 0.233644262907078 0.223601429528432 0.235952158519576 0.239745036717759 0.23257125938291 1 1|0 -|/ 10054564 10055459 10054950 10053603 10055717 - gene protein_coding_gene FALSE TRUE AT1G28610.1|AT1G28610.2 GDSL-motif lipase, putative similar to carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT1G28600.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087)|similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT2G27360.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.524547253734186 6.36527529983538 5.60006507271215e-05 0.81066541992581 7.19447703147723 9.21472740237413 0.524547253734186 0.0247356534274099
AT4G29740_at 7.13087434419581 7.59962899269332 7.73540854275718 7.8917249138769 5.48902601860916 5.71176158409242 3.54202643031635 3.97642941707488 5.84659045900819 4.67977953314555 5.25570733216461 6.54422574543366 4.44645660969258 5.39629342510762 6.04605295807271 5.70558425066676 4.32863592231236 5.08464432998663 4.80026356255054 0.232967585872159 0.234859026991158 0.228793372600596 0.230417675124436 0.225224252528713 0.227630471494408 0.222610398954868 0.225014856498342 0.233625768056044 0.238147020485399 0.221792130078704 0.219667948909631 0.228298544461645 0.228713777592004 0.224734112376021 0.222294493063040 0.223606086886487 0.219728387446154 0.228786516897961 4 4|0 +|/ 14568213 14568907 14568628.2 14566271 14569338 + gene protein_coding_gene FALSE TRUE AT4G29740.1|AT4G29740.2 CKX4 (CYTOKININ OXIDASE 4); cytokinin dehydrogenase It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 4 precursor (EC 1.5.99.12) (Cytokinin oxidase 4) (CKO 4) (AtCKX4) (CKX4) [Arabidopsis Thaliana] (GB:Q9FUJ2;GB:Q9SU77); similar to CKX2 (CYTOKININ OXIDASE 2), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G19500.1); similar to cytokinin oxidase [Zea mays] (GB:CAA77151.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094)|Identical to Cytokinin dehydrogenase 4 precursor (EC 1.5.99.12) (Cytokinin oxidase 4) (CKO 4) (AtCKX4) (CKX4) [Arabidopsis Thaliana] (GB:Q9FUJ2;GB:Q9SU77); similar to CKX2 (CYTOKININ OXIDASE 2), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G19500.1); similar to cytokinin oxidase [Dendrobium cv. 'Sonia'] (GB:CAC17752.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) 0.693406344437668 6.36238090795883 5.62239605643073e-05 0.813841829168348 7.19136510778739 11.3645239920759 0.693406344437668 0.120205470544465
AT2G18600_at 2.24645802976942 2.40773888649799 3.59872995538991 3.36979144863192 3.05131171653331 3.31931808242476 3.27315061718793 3.32239083956706 2.50280339689248 2.96651420112114 3.25395885274416 2.91226419317583 3.42815541513167 3.22179123495029 2.54782380678943 3.84013341588852 3.2592507274393 3.36857061655494 2.31829670029738 0.244852282277431 0.235478999344138 0.236907681592412 0.241670647537012 0.23626913059249 0.236041701096474 0.236471484412502 0.239130004522883 0.253691084021530 0.232020019799628 0.247946850266642 0.232501502465959 0.235531743636696 0.241162619490907 0.235229410667888 0.232844002886690 0.24921407607573 0.245688643655293 0.232020019799628 2 2|0 -|/ 8080446 8081107 8080717 8080282 8082064 - gene protein_coding_gene FALSE TRUE AT2G18600.1 RUB1-conjugating enzyme, putative Identical to Probable NEDD8-conjugating enzyme Ubc12-like (EC 6.3.2.-) (RUB1- conjugating enzyme 2) (RUB1-protein ligase 2) (RUB1 carrier protein 2) (RCE2) [Arabidopsis Thaliana] (GB:Q9ZU75); similar to RCE1 (RUB1 CONJUGATING ENZYME 1), small protein conjugating enzyme [Arabidopsis thaliana] (TAIR:AT4G36800.1); similar to ubiquitin-conjugating enzyme [Vitis pseudoreticulata] (GB:ABC86743.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.577737653776652 6.36186682464195 5.62637229986557e-05 0.814361126682543 7.1908122396707 5.98604367980259 0.577737653776652 0.0676190734510746
AT3G56290_at 9.06902057952714 9.28412327486902 9.73945636010869 9.92153090072812 9.30875684480804 9.22372530738916 11.1845759881961 11.1401130279487 10.0749046855099 10.4452835662681 9.52287531914269 9.51478950985564 10.0600684564526 9.6847099325393 9.01756315835685 10.2737824170872 10.3185047468471 9.74699805061647 10.2331880784827 0.148931229697462 0.144614119527863 0.154077433137116 0.156689697152416 0.148001991691355 0.148403399374546 0.147715895583433 0.145827630677027 0.158071297445682 0.158770467039364 0.157128853576177 0.146144143752962 0.144931669939183 0.161850288070890 0.165212387208079 0.144306404962770 0.157566744007305 0.144701517729191 0.147875761730425 3 3 - 20889730 20890490 20890211.364 20889518 20890547 - gene protein_coding_gene FALSE TRUE AT3G56290.1 similar to Os01g0823600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044661.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58546.1) -0.552402429467374 -6.36088961941379 5.63393891942529e-05 0.815399979808422 7.1897611863361 19.8681812315881 -0.552402429467374 0.0515190521080077
AT4G34220_at 7.95409755906794 8.09893656178761 6.18972674012355 6.52406095951727 7.48106104339787 7.79350226951022 8.21571352690236 8.15273172875209 8.91564243022333 8.38865536708494 8.9491756133379 9.19104922906402 8.65218531867173 8.48463696675928 8.97838708913383 8.65249258078227 7.84534929572262 8.5141542299118 8.99397893765414 0.196718175793917 0.194231095845637 0.238493756145602 0.235561335189570 0.189598593194000 0.204307059116018 0.188340900249979 0.18468165498014 0.193461247118307 0.184216357138567 0.179549924658827 0.191142957700743 0.189066688987609 0.183396836308559 0.179156837595036 0.181100256083642 0.184841689374938 0.193176112066548 0.192699044278811 4 4 - 16381765 16382202 16381972.636 16381510 16384198 - gene protein_coding_gene FALSE TRUE AT4G34220.1 leucine-rich repeat transmembrane protein kinase, putative Identical to Receptor protein kinase-like protein At4g34220 precursor [Arabidopsis Thaliana] (GB:Q94C77;GB:O49483); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G15300.1); similar to Os06g0638500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058153.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os09g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062569.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.607972772777406 -6.35723325624989 5.66234734119737e-05 0.819454907218083 7.18582707582534 16.2634893163376 -0.607972772777406 0.0837741761879369
AT3G09490_at 4.33999161669205 4.56427786691422 5.21740215313113 5.58261074000383 3.69218295391005 3.53050693245361 1.96131449563308 1.94965566062080 2.94274809295326 2.34117590565679 2.15446468871044 2.79645461284355 2.10426162986169 2.47604487343820 2.33201012135012 2.38167731983333 2.70719589252592 3.1241052005306 2.55645385669680 0.258764537054653 0.250975378666783 0.256374773224450 0.271664659476555 0.248211582540294 0.250210716125447 0.263211188767103 0.247786607523508 0.253622431311563 0.249701125087733 0.247786607523508 0.248561100507529 0.253897135812962 0.247786607523508 0.253887321722251 0.249725193716961 0.247805379176700 0.2527377308735 0.247786607523508 3 3 + 2916049 2916611 2916358.182 2915565 2916679 + gene protein_coding_gene FALSE TRUE AT3G09490.1 chloroplast lumen common family protein similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT5G02590.1); similar to TPR repeat [Medicago truncatula] (GB:ABE81686.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.598966646097035 6.35706223462632 5.66367985566554e-05 0.81959111191336 7.18564300754433 6.41623584116435 0.598966646097035 0.079295433063067
AT1G21670_at 9.71496581954144 9.96369475547775 9.49051062427094 9.4434004258309 10.1923670444565 10.1430766725083 8.52087221221297 8.63014363252068 7.26240988034648 7.45406312532418 7.7894642452749 8.1163875916454 8.27971287723351 7.98174498325096 7.6554450266843 7.26131755868249 8.34569773636507 8.07079038102441 7.64261250463418 0.17468472040536 0.182706470956957 0.173799428925691 0.184077150315191 0.184232955404483 0.185614516780225 0.181282513228323 0.175645853315797 0.182480128381206 0.185914344198117 0.170059356351207 0.168411247395658 0.179155768575226 0.180622990280711 0.181535917288284 0.176382428990370 0.178002849415116 0.178308389822484 0.178735977231283 1 1 + 7612012 7612461 7612212.545 7610387 7612671 + gene protein_coding_gene FALSE TRUE AT1G21670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21680.1); similar to WD40 domain protein beta Propeller [Solibacter usitatus Ellin6076] (GB:YP_828764.1); similar to Os03g0840200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051846.1); similar to Os07g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060406.1); contains InterPro domain WD40-like Beta Propeller; (InterPro:IPR011659) 0.547230566706818 6.34864799577373 5.7296556035774e-05 0.82908116583765 7.17658075988485 17.2076781750800 0.547230566706818 0.0484723729832068
AT1G62570_at 4.66517344840064 5.52873968734199 4.95126392811294 5.4518906859336 4.71247589876901 4.1637813813824 6.89428954829595 6.94043522724275 2.98989567558785 3.7167175233983 2.29175914164261 2.54435352451684 3.32386942125581 2.71037465911115 1.37535344726425 3.34752208901606 3.19850519512112 2.35820325474940 3.16586462900989 0.296501232511653 0.294698290358587 0.295024162131936 0.294951692344792 0.296927486823667 0.296355931099015 0.293391191423339 0.297108672332703 0.301516807242359 0.295536616302963 0.294332112608687 0.291829757594096 0.295749583860977 0.29957615343663 0.313079374687177 0.291782766031227 0.298358411093072 0.300808274401451 0.295610301216931 1 1 + 23174595 23175420 23175077.091 23172801 23175770 + gene protein_coding_gene FALSE TRUE AT1G62570.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62560.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62540.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G65860.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.917194927675769 -6.34844023040629 5.73129505346764e-05 0.829261081286233 7.17635684211939 8.38079049280991 -0.917194927675769 0.197279955959511
AT1G29880_at 8.35643955561315 8.42838181152848 8.30828634981462 8.39498253119883 8.4526223994981 8.02364601172682 8.93605147426015 8.77375673514176 9.03544154083288 9.14395815584025 8.20015289349864 8.14077777216279 7.91642540332197 7.9047583113826 8.45644120901413 8.41508771579433 8.19648487944461 8.25408955322276 9.00747758909911 0.164648308246169 0.164647479235431 0.173460693560027 0.174402641979102 0.160813521136387 0.167820034958174 0.174192867809713 0.164253002063737 0.170841323177516 0.163328371666156 0.166518952524818 0.164884804413232 0.162483911731825 0.172370883693985 0.168842514012295 0.169733209558500 0.184718162433800 0.179771326241896 0.162652879636969 1 1 - 10459681 10460215 10459955.273 10459462 10462785 - gene protein_coding_gene FALSE TRUE AT1G29880.1 glycyl-tRNA synthetase / glycine--tRNA ligase Identical to Glycyl-tRNA synthetase 1, mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase 1) (GlyRS 1) (GLYRS-1) [Arabidopsis Thaliana] (GB:O23627;GB:Q8LBY0;GB:Q949T7); similar to tRNA synthetase class II (G, H, P and S) family protein [Arabidopsis thaliana] (TAIR:AT1G29870.1); similar to PREDICTED: similar to glycyl-tRNA synthetase [Rattus norve (GB:XP_001061006.1); similar to Glycyl-tRNA synthetase [Mus musculus] (GB:AAH21747.1); similar to H0209H04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66534.1); contains InterPro domain WHEP-TRS; (InterPro:IPR000738); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Glycyl-tRNA synthetase, alpha2 dimer; (InterPro:IPR002315) -0.602769141218404 -6.34609705241715 5.74981956783117e-05 0.831883895073814 7.17383099103025 17.0831806815082 -0.602769141218404 0.0817309603868619
AT3G05200_at 8.18597704313408 8.43489928173303 8.48879513146934 8.65590955403773 8.73397598962426 8.6425866823049 6.7553848772007 6.78607642265537 7.15809768255414 7.00041468986475 7.08075778100497 6.67291848316175 7.41005036973807 7.26449255873293 6.86593714712633 7.50772008618241 7.46123237721604 7.01362085217179 7.26204218706614 0.174522675068712 0.170081893970670 0.172322118491178 0.170630650242847 0.170081893970670 0.186141826382716 0.17516923725964 0.181363778798616 0.177908008507757 0.170081893970670 0.173926596710379 0.171433200305056 0.174420579449577 0.175561251975754 0.173789550438737 0.176470962172668 0.171937432424665 0.185381224458858 0.174567068839078 3 3 + 1477980 1478538 1478263 1476988 1478736 + gene protein_coding_gene FALSE TRUE AT3G05200.1 ATL6 (Arabidopsis T?xicos en Levadura 6); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). Identical to RING-H2 finger protein ATL3B precursor (RING-H2 finger protein ATL6) (ATL3B) [Arabidopsis Thaliana] (GB:Q8RXX9;GB:Q9MA99;GB:Q9XF65); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G27420.1); similar to RING/C3HC4/PHD zinc finger-like protein [Cucumis melo] (GB:AAO45753.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.554569393466687 6.33720416052203 5.82070948137466e-05 0.842082040670472 7.16423634557512 15.2353386528092 0.554569393466687 0.0545008148561308
AT4G16670_at 3.55344433690928 3.91277684739944 4.1535188986092 4.37641315324003 4.51189755630995 4.52497282103211 3.36484788759356 3.03870995252943 2.29387761811589 3.0242309119202 3.44553556547562 3.24141546254936 3.05394082930515 3.43990074532549 2.62057584021109 3.11170681274308 2.9994784141483 2.91093230179733 3.01884981567810 0.219224893725660 0.212130122814896 0.210758595878716 0.207662673084097 0.212625980105989 0.226621079846802 0.212133716651822 0.211471878459259 0.211719688132535 0.211027091010666 0.216392755370240 0.209813071112321 0.214049150435443 0.209189491643766 0.211557542073787 0.212619321882673 0.214950674070110 0.207662673084097 0.212829092982423 4 4 + 9386518 9387545 9386976.909 9385241 9387776 + gene protein_coding_gene FALSE TRUE AT4G16670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17350.1); similar to hypothetical protein 31.t00035 [Brassica oleracea] (GB:ABD65121.1); contains InterPro domain Pleckstrin-like, plant; (InterPro:IPR013666); contains InterPro domain Protein of unknown function DUF828, plant; (InterPro:IPR008546) 0.624102741198128 6.33438000639682 5.8434175178037e-05 0.845308778125483 7.16118652693925 6.87053361254412 0.624102741198128 0.0924407763167055
AT2G33430_at 7.80354453473058 8.2526633286777 7.2590431966277 7.08600628703265 7.58164716105427 7.67359062167727 8.66867020888932 8.1854786477156 7.37919445389173 7.578586287994 6.64410570456019 7.0880486492798 7.05853911642047 6.7179666127204 7.45897369823322 6.64674949267943 7.08940988898827 6.87004132250631 7.52366537089535 0.209440628498369 0.205518890548660 0.200180644103326 0.206214699519802 0.198487953426706 0.199158294212696 0.20992016155381 0.213890159936233 0.208018312065609 0.201596507322441 0.205483577676258 0.19948221460009 0.198546673665443 0.201744919225292 0.204811423393409 0.200015857921389 0.207379891155608 0.209155275440484 0.205159174097041 2 2 + 14169890 14171761 14170500.091 14169743 14172118 + gene protein_coding_gene FALSE TRUE AT2G33430.1 plastid developmental protein DAG, putative similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT1G32580.1); similar to putative plastid protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22214.1); similar to OSJNBa0041A02.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD41861.2); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.687301711829417 -6.33255730941092 5.85812350924627e-05 0.847377565612472 7.15921746859784 15.0341028391009 -0.687301711829417 0.119090927280518
AT1G33590_at 11.0881412214287 11.2673473055014 11.2805518566415 11.3490170832764 11.7113451365003 11.6315979087437 10.9611412947273 10.7948636500775 10.9471433199708 10.9684152105450 11.6229739562453 11.8503737081914 11.3602751135477 11.6288129614262 11.3192880837901 11.6694217026094 11.4083969616593 11.5011706912752 10.8596223851823 0.0831658771071478 0.0830868226559407 0.0845700204622179 0.0821129289177662 0.0824432816006104 0.0851880676243788 0.0840652827196355 0.0834554456029512 0.097086805874841 0.0873630479180544 0.0852723572112072 0.0826336856871693 0.0821129289177662 0.0821129289177662 0.087349714823379 0.0821129289177662 0.0831714588306263 0.0851757840750591 0.087075215666153 1 1 + 12178606 12179151 12178841.091 12177757 12179393 + gene protein_coding_gene FALSE TRUE AT1G33590.1 disease resistance protein-related / LRR protein-related similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33600.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33610.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE89631.1); similar to H0402C08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86230.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.542641735233564 6.33137426466147 5.86768981207607e-05 0.848702654418682 7.15793912445221 22.4955754084 0.542641735233564 0.0460501625163325
AT1G23180_at 6.0673254978438 6.21958367289371 5.90679227535035 5.97271684061699 6.04129458980541 5.99919447443589 7.02485201235202 6.63101851075037 6.7496491493406 7.04705486852014 6.12574830674479 6.19545155156089 5.88419483892423 5.88594564610872 6.56484515497849 5.8486528069121 6.08090393051231 6.48227816672027 6.60661688237361 0.202129200934891 0.196150449723671 0.200766414433731 0.202563171181462 0.207013956635821 0.209814190031776 0.209197329561993 0.199438967856232 0.209103600406677 0.196150449723671 0.198688828450646 0.199454305579965 0.198088066703793 0.213253376237830 0.200189280496142 0.204003857923045 0.225546319730499 0.207223436960234 0.196150449723671 1 1 + 8218924 8219464 8219109.364 8215710 8219573 + gene protein_coding_gene FALSE TRUE AT1G23180.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44900.1); similar to hypothetical protein CIMG_09351 [Coccidioides immitis RS] (GB:XP_001239730.1); similar to hypothetical protein Tb10.61.2450 [Trypanosoma brucei TREU927] (GB:XP_827912.1); similar to Os01g0524700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043222.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.586649897422436 -6.3273912606664 5.90002013794577e-05 0.853319912551097 7.15363352602783 12.7001519927823 -0.586649897422436 0.0743140022808672
AT1G21130_at 9.14306682678406 9.25725419987714 9.36762470991162 9.469478055478 10.0743903849878 9.43764565140415 8.31557631921085 8.22791280456815 8.83906028965972 8.6827013343846 9.21492551007138 9.5878842648634 9.15825157700131 9.15226215350183 8.54530712831684 8.90307484716556 8.57028821716914 9.17645491581959 8.10044245202764 0.152762232743009 0.148045117837770 0.154436077910968 0.152666785498685 0.152316048512918 0.151235863313551 0.155053368587916 0.150432788500645 0.151183148353751 0.148045117837770 0.14948342167444 0.153546006916514 0.154513662270039 0.152039956611939 0.153175267061899 0.148565885287827 0.148045117837770 0.149826797743755 0.148081371894615 1 1 - 7399365 7399804 7399714.364 7399051 7400594 - gene protein_coding_gene FALSE TRUE AT1G21130.1|AT1G21130.2 O-methyltransferase, putative similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21120.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21100.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21110.1); similar to phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] (GB:BAD18975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21120.1); similar to phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] (GB:BAD18975.1); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967) 0.674576773775 6.32575379483472 5.91336680739034e-05 0.855191107684791 7.1518626561513 17.9512640034090 0.674576773775 0.114339458148192
AT1G72370_at 11.0138702863951 11.1320229041861 10.5311528475340 10.5560173297677 10.5726056828467 10.452845364618 11.2846032179451 11.441219376567 10.8581308250660 10.7289053854056 10.2411725116421 10.6076835830613 10.2249023096278 10.2310148001259 10.9674599369961 10.0027718691223 10.1800358564686 10.2907152063020 10.5828149084451 0.0651854466500282 0.0655308078640386 0.0692711827469791 0.0687245777750876 0.0670339308460742 0.0691402524265253 0.0669730056556852 0.0671722987429025 0.0703092987023384 0.0660303581752398 0.0657546256127354 0.0654686102824614 0.0651854466500282 0.0656168624893458 0.0651854466500282 0.0651854466500282 0.0705137778548795 0.0668952182085572 0.0655119396597401 1 1|0 -|/ 27246992 27247614 27247291.8 27246605 27248593 - gene protein_coding_gene FALSE TRUE AT1G72370.1|AT1G72370.2 P40 (40S ribosomal protein SA); structural constituent of ribosome acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. Identical to 40S ribosomal protein Sa-1 (p40) (Laminin receptor homolog) (RPSaA) [Arabidopsis Thaliana] (GB:Q08682;GB:Q93V81); similar to RPSAB (40S ribosomal protein SA B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04770.2); similar to 40S ribosomal protein SA (p40) (Laminin receptor-like protein) (GB:Q9ZSR8); contains InterPro domain Ribosomal protein S2, eukaryotic and archaeal form; (InterPro:IPR005707); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) -0.534918918609533 -6.32408225626197 5.92702452457989e-05 0.857107016499497 7.15005446802686 21.4062937339694 -0.534918918609533 0.0400087406827005
AT1G69360_at 5.73858992305876 5.74581275419044 5.98994784367904 6.17343739088802 6.68299503830422 6.92034964055363 5.26589045657198 4.98128820267187 4.80864833775175 5.3150705369088 5.01133369421691 4.84125138588735 5.13156762527908 5.18578888554819 4.71451114364951 5.76650879284249 5.43797749406028 4.84192443127934 4.76445740888871 0.239271063665421 0.236445027767372 0.233696864355742 0.233208333341253 0.234823818946718 0.239492041395133 0.237529049512925 0.237993779311684 0.240599228988252 0.240652678494307 0.234121478070773 0.233208333341253 0.241716014939282 0.233847287553393 0.237306959734226 0.233208333341253 0.246883895919473 0.233632202232479 0.241015933765363 1 1 - 26076185 26076704 26076452.091 26075947 26079917 - gene protein_coding_gene FALSE TRUE AT1G69360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26620.1); similar to Os03g0758600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051334.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK16179.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98981.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) 0.581209823989303 6.32300092724853 5.93587776673257e-05 0.85832792506953 7.14888448677093 10.9768305859623 0.581209823989303 0.0715735832687905
AT3G47340_at 8.18502211637814 8.50693286775027 1.46178791588389 1.46844862850001 9.4311996984122 8.72987940576716 1.95706514932056 1.84690844528994 3.68858480227785 3.62953084454823 2.66340516229574 3.61583437311922 2.69714280636344 2.56015078049550 3.01874389484389 1.85173346130374 2.07817570136277 2.34586693801023 5.30585472043119 0.306564256762583 0.31256675315871 0.303081999400087 0.283723307553881 0.307126524601409 0.322936530590993 0.292311629523804 0.288626668118203 0.298158051536302 0.292315249380511 0.287497403839636 0.283723307553881 0.289396907156111 0.290792577745753 0.285745235975490 0.295820657697096 0.283723307553881 0.283723307553881 0.314437665027306 3 3|0 -|/ 17449173 17449948 17449519.111 17448869 17452228 - gene protein_coding_gene FALSE TRUE AT3G47340.1|AT3G47340.2|AT3G47340.3 ASN1 (DARK INDUCIBLE 6) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. Identical to Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine- dependent asparagine synthetase) (ASN1) [Arabidopsis Thaliana] (GB:P49078); similar to ASN3 (ASPARAGINE SYNTHETASE 3), asparagine synthase (glutamine-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G10240.1); similar to ASN2 (ASPARAGINE SYNTHETASE 2), asparagine synthase (glutamine-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G65010.1); similar to aspara (GB:AAC16325.1); similar to Aspara (GB:P49091); similar to aspara (GB:BAB17726.1); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583); contains InterPro domain Asparagine synthase, glutamine-hydrolyzing; (InterPro:IPR006426); contains InterPro domain Asparagine synthase; (InterPro:IPR001962)|Identical to Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine- dependent asparagine synthetase) (ASN1) [Arabidopsis Thaliana] (GB:P49078); similar to ASN2 (ASPARAGINE SYNTHETASE 2), asparagine synthase (glutamine-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G65010.2); similar to ASN3 (ASPARAGINE SYNTHETASE 3), asparagine synthase (glutamine-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G10240.1); similar to aspara (GB:AAC16325.1); similar to Aspara (GB:P49091); similar to aspara (GB:BAB17726.1); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583); contains InterPro domain Asparagine synthase, glutamine-hydrolyzing; (InterPro:IPR006426); contains InterPro domain Asparagine synthase; (InterPro:IPR001962) -0.727630857619344 -6.31985803484765 5.9616902200702e-05 0.862000788919951 7.14548279825415 8.60434140948447 -0.727630857619344 0.134900028729725
AT3G01060_at 10.7376840736218 10.6925058839824 10.3854048210897 10.3896704327591 10.1840560406321 9.9285501830016 11.7402139453345 11.3829350024820 11.1309848159119 11.2654848088160 10.8792876389811 11.0580758473467 10.8953752563434 10.9861218835150 10.6537537904798 11.2808003755815 11.0706358339238 10.6358949770024 11.1911674031866 0.0904078231629831 0.0891221196350884 0.0925466726960504 0.0917734559776503 0.088188270312854 0.0957919416417787 0.0879720086568587 0.0885353173094908 0.0951741458180212 0.0871030829403845 0.0871030829403845 0.0871030829403845 0.0884739784880114 0.0880674226633211 0.0902082972162158 0.0871712770892261 0.088733011060993 0.089707805252957 0.0871030829403845 3 3 - 16870 17520 17143.364 16650 18847 - gene protein_coding_gene FALSE TRUE AT3G01060.1|AT3G01060.2|AT3G01060.3 similar to unknown [Brassica rapa] (GB:ABC41272.1) -0.589900082946322 -6.31975551675188 5.96253421731583e-05 0.862063197139523 7.14537181021833 21.7443136527137 -0.589900082946322 0.076417057966669
AT1G53170_at 7.30205749253616 7.62998082363649 7.75413878231542 8.03591765450986 8.02109410554932 8.28617549274848 7.4310753255679 7.9517091901319 7.4569447942748 7.54370477463375 8.1846750048103 8.58792121939185 8.758953350445 8.05558508639575 8.27662145693228 8.7570927075318 8.70755077781916 8.2862578348468 7.47443079474516 0.157927747420383 0.158485774050437 0.174784752221046 0.168657648143385 0.159301587985991 0.165587479173629 0.160708921216162 0.156719955964727 0.180174009490166 0.168969615681198 0.167394524659727 0.155070334543461 0.163045703947955 0.169631695353871 0.158488851661696 0.155070334543461 0.173279124537762 0.167528868994363 0.161909788320453 1 1 - 19825216 19825697 19825427.364 19825005 19825920 - gene protein_coding_gene FALSE TRUE AT1G53170.1 ATERF-8/ATERF8 (ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 8 (Ethylene-responsive element-binding factor 8) (EREBP-8) (AtERF8) (ERF8) [Arabidopsis Thaliana] (GB:Q9MAI5); similar to ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G15210.1); similar to ethylene responsive element binding factor 4-like protein [Thellun (GB:AAM19703.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.702882263016521 6.31671068512884 5.98765967589934e-05 0.865635959344768 7.14207460351318 15.7732814255359 0.702882263016521 0.125778816246143
AT1G47960_at 7.78384585760147 7.81821481676241 8.59584046720683 9.11514675690488 9.71862516568643 8.9854384158971 8.3582620152561 8.59499409499128 5.78976719293571 6.77711587794564 6.68552610575832 6.7021640941591 6.85616039418329 6.66756584123261 6.27765151656681 7.46923568569125 7.7098189103371 6.58580835204725 6.13111759778541 0.264012511881724 0.256633249388829 0.265516008629172 0.256633249388829 0.26177004195553 0.267423587871527 0.256633249388829 0.261305706600799 0.269326284046018 0.264147654349281 0.256633249388829 0.265356270906056 0.258488106251474 0.265737422202710 0.259097570816008 0.256633249388829 0.25931827290564 0.261165487617913 0.257521499126797 1 1 - 17686152 17687069 17686448.091 17684826 17687298 - gene protein_coding_gene FALSE TRUE AT1G47960.1 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); pectinesterase inhibitor Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. similar to invertase inhibitor-related [Arabidopsis thaliana] (TAIR:AT3G17140.1); similar to invertase inhibitor [Nicotiana tabacum] (GB:CAA73333.1); similar to invertase inhibitor [Nicotiana langsdorffii x Nicotiana sanderae] (GB:ABB17076.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.800753989106192 6.31414071707696 6.00895480106e-05 0.868654506041233 7.13929039386263 15.1722500748146 0.800753989106192 0.160900372403783
AT2G46490_at 9.09566362669096 9.00695847320093 8.84249245669875 8.93330363549769 9.76054933743437 9.3799106506365 8.04986036087001 8.20383374574558 8.86931048151937 8.48819314475617 9.90815320347791 9.18689888395927 9.17718857938186 9.56455226758545 9.15472059960948 9.27671408469447 9.13019704118008 9.16136434689436 9.01332930503431 0.145001221020049 0.145603728140127 0.152370803847674 0.148403995577476 0.145001221020049 0.158148349207710 0.162346349127921 0.165618990104205 0.163736592692851 0.157430545445666 0.145001221020049 0.150751438374293 0.151205069667573 0.150485754950942 0.154037240352571 0.145001221020049 0.165387571829015 0.151680284776435 0.148273776634836 2 2 + 19086544 19086846 19086665.455 19086478 19087125 + gene protein_coding_gene FALSE TRUE AT2G46490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35110.1) 0.584840475258934 6.30665180376644 6.0714724352587e-05 0.877631340516645 7.1311707739842 17.9641971706558 0.584840475258934 0.0743750386424899
AT3G56900_at 3.59529122155936 3.96308461805462 2.64208397997590 2.93310998692323 3.26626170070691 3.10555239920197 3.75669356472253 4.06252735517956 3.32382866620934 4.03331475610539 3.03832827527241 3.49273439782001 2.84197606846398 3.22695900172925 3.17266155092899 3.40772325395119 3.49297182090670 3.39495707614785 3.68587521304258 0.248637462520800 0.247633053424301 0.249292483369258 0.252785256799393 0.241209543596529 0.237226635073815 0.258593352015083 0.241958348332331 0.242627792729339 0.241109660502769 0.243354881757811 0.240469903422267 0.237226635073815 0.238651707610189 0.238906800435132 0.242066843620872 0.237226635073815 0.240452152509625 0.245684711776476 3 3|0 +|/ 21079083 21080262 21079688.667 21077129 21080462 + gene protein_coding_gene FALSE TRUE AT3G56900.1 aladin-related / adracalin-related similar to HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA), nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G44530.1); similar to Os11g0132700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065665.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG22347.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.640057227155119 -6.30611422741575 6.07598682785208e-05 0.87822313609774 7.13058755668274 6.88534817450967 -0.640057227155119 0.100807855613578
AT1G48100_at 5.06033897740848 5.35377361188955 4.82985752559151 4.85373063810103 4.99301523000253 5.41004912415317 5.49066995983261 5.60375840030351 2.87566733524081 4.04569654554452 5.31885288762029 6.23583471057386 5.88368595748316 5.14189708703064 4.55057699116636 4.98999491706137 5.55456413099184 5.23394912125098 4.40069328579996 0.215416250938690 0.215416250938690 0.217292743601323 0.22039701074561 0.21934160775473 0.220346729564130 0.219376464563244 0.234505293688464 0.256075236901013 0.217341356020567 0.217309947223810 0.215416250938690 0.215416250938690 0.225897187915246 0.223820615571115 0.215416250938690 0.227369318418217 0.229883742953247 0.220359583953942 1 1|0 +|/ 17772022 17773219 17772884.2 17770543 17773620 + gene protein_coding_gene FALSE TRUE AT1G48100.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98503.1); similar to Os05g0279900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055086.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.617089155986204 6.30610305559703 6.0760806832613e-05 0.87822313609774 7.13057543584015 9.76824344887317 0.617089155986204 0.0904829469459921
AT4G23220_at 6.06951051910415 6.5135875949242 6.88354559615114 6.68783739316481 5.7283910405714 4.99248073968466 1.36065354439181 1.43382897319125 5.93603110794097 2.15691442438283 3.18146076145337 5.00150675271145 1.63757318483432 3.04079255595212 3.25286624738291 2.26959857291974 2.11001649432025 2.75170272908904 2.64933422743088 0.297172676434779 0.284111798431135 0.281494615522146 0.287347213161327 0.288751347857123 0.290112312132547 0.287324376226981 0.291768916202916 0.29499662955738 0.281048568969485 0.281048568969485 0.281048568969485 0.290406875570171 0.281166242745951 0.281048568969485 0.281048568969485 0.290338994473327 0.288070415044526 0.281210073110144 4 0|4 /|- 12154138 12154599 12154307.444 12153967 12156948 - gene protein_coding_gene FALSE TRUE AT4G23220.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.776799138452414 6.30484190983476 6.08668565442138e-05 0.879647810776978 7.12920702173284 8.20195421627349 0.776799138452414 0.153075117637316
AT2G43420_at 6.02066362474844 6.44237740768292 6.54999982193076 6.61489134368196 7.34008699131358 6.30775209846012 5.27618442334907 5.30921621797441 5.13791772181929 4.78462977866691 5.9325941266892 6.1920596729886 5.61550136791214 5.65444936251491 5.29469746893287 5.97921414608297 5.83422089353813 6.11612992118636 4.99211507582277 0.227941789315285 0.207962693573895 0.227864635420439 0.209708166933014 0.216500037748278 0.223828812929525 0.215520221203031 0.217943676604076 0.21814369933339 0.213177414674135 0.214225824055631 0.218749521615869 0.212414115459145 0.214494356770066 0.21125346703341 0.213900644052702 0.242664714159489 0.228555460861228 0.214099603525831 2 2|0 -|/ 18038679 18039376 18039085.3 18038345 18042175 - gene protein_coding_gene FALSE TRUE AT2G43420.1 3-beta hydroxysteroid dehydrogenase/isomerase family protein similar to AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2), 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT2G26260.1); similar to Os09g0516500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063672.1); similar to Os03g0405000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050327.1); similar to putative 3-beta hydroxysteroid dehydrogenase/isomerase [Oryza sativa (japonica cultivar-group)] (GB:AAP50919.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.898438161642774 6.30347952170142 6.09816422779397e-05 0.881245712558507 7.12772844984573 11.6321027721845 0.898438161642774 0.193392737348196
AT3G58070_at 3.00762295119362 2.87532572984633 2.88481608807811 2.81048156153701 2.14327359515704 2.44394558966475 3.86306454261034 3.86970798564114 3.07952934678602 3.26358022526871 2.32831027642589 2.84602975888582 3.13752081965362 2.77196453573578 2.99310548934409 3.13613371182090 2.51791534719085 2.95537604763368 3.00646578180043 0.231524835380029 0.231630701980430 0.232489981086500 0.231559582235547 0.236990252814446 0.231524835380029 0.247139311832150 0.246902313868161 0.232232396614282 0.238536261585337 0.233509543879677 0.231524835380029 0.231524835380029 0.241096771356234 0.23204891444384 0.235023500791851 0.233961220099456 0.250837042331253 0.232628832729330 3 3 - 21517851 21518221 21518034 21517590 21518631 - gene protein_coding_gene FALSE TRUE AT3G58070.1 GIS (GLABROUS INFLORESCENCE STEMS); nucleic acid binding / transcription factor/ zinc ion binding Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile?adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. similar to ZFP8 (ZINC FINGER PROTEIN 8), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G41940.1); similar to zinc finger protein (GB:AAA87304.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.557015856664509 -6.30075948969422 6.12115073786328e-05 0.884506281621244 7.1247755099568 5.96343956361007 -0.557015856664509 0.0582955281355579
AT1G78450_at 4.48150783070133 3.73737256799348 2.48526146853050 2.41037440429225 3.65219039295689 3.646605932208 4.43403021982966 4.04143222308653 3.47010982329263 4.48691756695262 4.42834865153084 3.92592256594761 3.79135064207279 5.36999852109397 3.38547539683885 4.61630239727476 3.32456338649411 3.07323349513007 5.17523164131598 0.211741394084067 0.21468885210495 0.212212179447881 0.220673480126644 0.214473105157646 0.222096995519572 0.216101346564775 0.210868761365103 0.214031707920583 0.216232333839481 0.210391553278208 0.222706915831773 0.217733873068256 0.210391553278208 0.220652841790338 0.213819653205007 0.220882676674701 0.211972757464088 0.215885374162740 1 1 - 29522108 29522685 29522381.273 29521882 29522826 - gene protein_coding_gene FALSE TRUE AT1G78450.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT1G17100.1); similar to Os01g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042368.1); similar to Os01g0235300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042521.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_797226.2); contains InterPro domain SOUL heme-binding protein; (InterPro:IPR006917) -0.756498978022518 -6.29952020448554 6.13165444129241e-05 0.885962750222341 7.12342969097955 7.7945064095673 -0.756498978022518 0.146178418653254
AT2G19940_at 6.74736915643233 7.19382161404121 5.94119096644112 5.52851793661576 6.46981728480049 6.2032920221128 7.59114699670686 7.71217806647994 7.82536724810316 7.52534194248446 7.36669443626138 7.90673868979618 7.32456612990218 7.57677840889503 7.88692679370353 7.31966644472871 6.6057050590182 7.89384080540095 7.34477839831118 0.171325199694446 0.169394815229572 0.183478924746570 0.177593161311589 0.165978883479964 0.172280714858718 0.177646826977893 0.178481099276914 0.173846377378725 0.168599381501146 0.1668143454818 0.172205862163958 0.165736342138530 0.180807283675716 0.169000154048351 0.181271676529137 0.195748945627204 0.173042645079123 0.167720438630410 2 2|0 +|/ 8621661 8622684 8622286.333 8620005 8623099 + gene protein_coding_gene FALSE TRUE AT2G19940.1|AT2G19940.2 semialdehyde dehydrogenase family protein Identical to Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor (EC 1.2.1.38) (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) [Arabidopsis Thaliana] (GB:Q93Z70;GB:O82187); similar to Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) (GB:Q93Z70); contains InterPro domain Semialdehyde dehydrogenase, NAD - binding; (InterPro:IPR000534); contains InterPro domain N-acetyl-gamma-glutamyl-phosphate reductase; (InterPro:IPR000706); contains InterPro domain Semialdehyde dehydrogenase, dimerisation region; (InterPro:IPR012280) -0.677736169796104 -6.29843958255863 6.14082911440395e-05 0.887226990449082 7.12225596118414 14.1985553182519 -0.677736169796104 0.116770621979156
AT2G35800_at 8.26265960289637 8.35293737443908 8.09365324230375 7.82196286330072 8.26883867698277 8.03913401792584 9.3241022270215 9.17034893441977 8.96527436032747 9.13284499724325 8.50810088225348 8.50237532052673 8.81972035632834 8.65794244903924 8.51225635707026 8.84322783114489 8.85376996915482 8.36778120662184 9.0800095636138 0.108124847899154 0.103872238073001 0.121263428962644 0.114762066521336 0.105054063081143 0.119271760945195 0.109321558947966 0.103872238073001 0.116145501510264 0.105730231880441 0.107216351513366 0.105601867515508 0.103872238073001 0.104078106990327 0.110321387128935 0.104548092019748 0.110356968803981 0.108045970890779 0.105864290729731 2 2 + 15054778 15055390 15055044 15051124 15055682 + gene protein_coding_gene FALSE TRUE AT2G35800.1 mitochondrial substrate carrier family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G26360.1); similar to Mitochondrial carrier protein, putative [Medicago truncatula] (GB:ABE77885.1); similar to Os12g0103000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065240.1); similar to Os11g0103700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065524.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.573922172554988 -6.29597035055741 6.16184850199857e-05 0.890202253083734 7.11957323046008 17.2629661692007 -0.573922172554988 0.0688683734664373
AT4G22980_at 3.18576917096684 3.27435450568262 4.58334695224834 5.11574341417889 2.54100801033963 2.27748479694617 1.73688716085883 1.56524367493581 1.87880378690135 1.19207226798443 1.83156102038844 1.92772846031290 1.51571556820206 1.87962050024632 1.28095680146386 1.79603545657043 1.83867554337609 1.72167123434775 1.73151795130434 0.240956061430783 0.239521389758851 0.254241702935615 0.258891057008497 0.237347390308511 0.242298658780111 0.237111204038634 0.241836861232345 0.23968742463132 0.242635006206519 0.243112196161694 0.237253589908396 0.238854131983841 0.236370415724749 0.240026878999685 0.240197995073935 0.236855556188595 0.245087774884481 0.238659415399518 4 4 - 12044035 12044553 12044354.182 12043977 12045712 - gene protein_coding_gene FALSE TRUE AT4G22980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51920.1); similar to Os03g0765800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051377.1); similar to Os08g0545000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062411.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99048.1); contains domain MOLYBDOPTERIN COFACTOR SULFURASE (MOSC) (PTHR14237); contains domain no description (G3D.3.40.640.10) 0.656014868183672 6.29450864250035 6.17432757954305e-05 0.89194336214079 7.11798464854357 4.69737649835807 0.656014868183672 0.108100216707990
AT2G39660_at 8.31223381166624 8.64589579920394 8.13683184827024 8.08614390083301 8.47960187656817 8.31604936432039 5.8034880208268 6.05690437642247 6.18565150604886 5.47528367530998 6.13845368252563 5.74730730370976 5.19549563757113 5.74146612789219 5.5457478392981 5.38635413067541 5.91567476879741 5.27913801521513 4.79918569517948 0.237308230048768 0.232158106202566 0.23077270744781 0.229445164232092 0.239521517312464 0.237303144109737 0.236391894695516 0.236236518395143 0.254915837965778 0.238212909551598 0.236267947830336 0.233599454307166 0.232965192008363 0.239115764244066 0.23154096831808 0.229540352863237 0.242849244783582 0.235335062603353 0.233417368840962 2 2|0 +|/ 16539925 16540652 16540337.3 16538766 16541009 + gene protein_coding_gene FALSE TRUE AT2G39660.1 BIK1 (BOTRYTIS-INDUCED KINASE1); kinase Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G55450.1); similar to putative protein kinase APK1A [Trifolium pratense] (GB:BAE71262.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.59101198741629 6.2925190625375 6.19135673602007e-05 0.894341480518099 7.11582179145571 13.2823494482923 0.59101198741629 0.0783287664358496
AT3G23280_at 10.9294399922018 11.1105512196071 11.2986731290831 11.3367751540549 11.5588671728446 11.2170609613191 10.6090090528474 10.2982469063866 9.82171341580031 9.76736265021924 10.3944862253060 10.1138810196958 10.4931234913485 10.3016340203243 10.1113171935175 10.1535398968668 10.4574040546433 10.5246331255195 9.57650640866796 0.0837827533914189 0.0797400407794985 0.0835802863829099 0.0842554900283417 0.0825676174847137 0.0883020026153629 0.0805789182681513 0.0797400407794985 0.0921391628198153 0.092151028074434 0.0798362056491142 0.0797400407794985 0.0830369130983287 0.0858472272373754 0.0837789616961434 0.0820013588920093 0.0928815920917477 0.0823726864701994 0.091729331002125 3 3 + 8323622 8324053 8323843.364 8321357 8324435 + gene protein_coding_gene FALSE TRUE AT3G23280.1|AT3G23280.2 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein similar to zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14365.1); similar to auxin-regulated protein-like protein [Populus trichocarpa] (GB:ABG37641.1); similar to Os07g0446100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059535.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.606461932535762 6.29122465529237 6.20246276385047e-05 0.895883721610563 7.11441428917425 21.0651345501923 0.606461932535762 0.0861210214287226
AT1G18810_at 9.44142733089736 9.44239454681172 8.76320758205206 8.87568937239197 8.96866438694334 9.17117345883046 9.92274867608864 9.90221987582336 9.14247908100281 9.79338148615387 9.00158932749433 9.15291799267248 9.70165503188597 9.18461674092226 8.70486059409552 9.53586142876932 9.47275875320828 8.98803032075772 9.71325505340546 0.0861639575850959 0.082442827038054 0.0865213896092177 0.0879079790927451 0.0835489373387632 0.0909092417022654 0.088213173202056 0.0879880172500184 0.0943212136073377 0.0875491193530934 0.0925237656122646 0.0852416950900508 0.0872097162994652 0.0843825886642725 0.0911156844437662 0.084625612337552 0.090927697559174 0.0876882821829559 0.092708855933322 1 1 - 6485747 6486267 6485979.727 6485587 6487021 - gene protein_coding_gene FALSE TRUE AT1G18810.1 phytochrome kinase substrate-related similar to PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) [Arabidopsis thaliana] (TAIR:AT2G02950.1); similar to phytochrome kinase substrate 1-like [Solanum tuberosum] (GB:AAU89731.1) -0.532216420239561 -6.28906010714691 6.22108225560272e-05 0.898510910176701 7.11205998206889 18.6946863940198 -0.532216420239561 0.0402457008498703
AT1G53680_at 1.85998826210871 1.61010892066438 1.79630843239331 1.84642120405383 1.59577055505613 1.44303661261439 2.81471457001964 2.68419884118908 2.60087919691217 2.77228022587769 1.7065705794252 2.19352310739279 2.07092147190715 2.07106066017515 2.09600163875983 2.39206008045636 2.07508846880672 1.95680495561156 2.43680308384266 0.199461324913816 0.199901587096395 0.204329044259259 0.212653878741918 0.199461324913816 0.200664420635792 0.204962630551032 0.199461324913816 0.199461324913816 0.203974258514859 0.204960244781899 0.205859392994389 0.202548088422862 0.199461324913816 0.211876266106030 0.208901996617629 0.210498497082908 0.199461324913816 0.205838748450806 1 1 + 20042201 20042703 20042428.545 20042026 20042785 + gene protein_coding_gene FALSE TRUE AT1G53680.1 ATGSTU28 (Arabidopsis thaliana Glutathione S-transferase (class tau) 28); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17180.1); similar to glutathione S-transferase U1 [Malva pusilla] (GB:AAO61854.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.552467706346682 -6.28555507100889 6.25135957847295e-05 0.902821350323064 7.10824597717108 4.29310577769294 -0.552467706346682 0.0561596348176815
AT1G07610_at 11.0292388435122 11.1876579233391 12.4291583379082 12.4549424945180 12.2766618409953 12.1407155664964 12.4777556668734 12.3941996752928 11.3366791232858 12.3210645806121 12.4357420173094 11.5882351259036 12.1936694950115 12.3194310485269 11.5238747510659 12.2918713341184 13.0161008799198 12.5815063706943 11.5539536913593 0.082941706794094 0.078619484404437 0.0774748460973446 0.0787074413374422 0.0781125029860941 0.0814291873401815 0.0791773562549426 0.0798698455808678 0.0826576669295171 0.0774748460973446 0.0797033434302855 0.0795675136734474 0.0783393277909789 0.0802911620419231 0.0795696721510454 0.0774748460973446 0.0806307637908678 0.0774748460973446 0.0774748460973446 1 0|1 /|+ 2341797 2341802 2341799.5 2341539 2342120 + gene protein_coding_gene FALSE TRUE AT1G07610.1 MT1C (metallothionein 1C) one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. Identical to Metallothionein-like protein 1C (MT-1C) (MT1C) [Arabidopsis Thaliana] (GB:Q38804); similar to MT1A (METALLOTHIONEIN 1A) [Arabidopsis thaliana] (TAIR:AT1G07600.1); similar to metallothionein-like protein 1 [Brassica oleracea] (GB:AAF70555.1); similar to Metallothionein-like protein LSC54 (GB:P43402); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347); contains InterPro domain Mollusc metallothionein, family 2; (InterPro:IPR001008) 0.52986397272905 6.27507155592597 6.34286325927186e-05 0.91597288327145 7.09682583632551 24.0393094650691 0.52986397272905 0.0391671378498077
AT1G27210_at 6.12540815031537 5.57313637444632 3.08829613553268 2.42502396468583 4.12432825241296 4.06069089357373 4.83470883450248 3.9932928157172 5.77535611574511 4.9860402195012 5.5360680403301 7.36275573947815 5.41852254566263 5.64560486797126 6.69093286841428 5.57744854935419 3.55761969735841 4.75152699228694 6.47904927075985 0.220417568771663 0.223111731717053 0.235670709203857 0.24920490704101 0.232380753605002 0.226048117799614 0.220526222333340 0.217140690866945 0.222709296241544 0.217140690866945 0.222207000637659 0.235381953907562 0.222833653301733 0.217140690866945 0.226807411361442 0.220386456673662 0.227433373538005 0.221237997508180 0.223816119804166 1 1|0 -|/ 9455870 9456405 9456104.3 9455355 9458013 - gene protein_coding_gene FALSE TRUE AT1G27210.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G59850.1); similar to Os06g0244700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057275.1); similar to putative potyviral helper component protease-interacting protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD45803.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.94315351079455 -6.27293136508471 6.3617190773042e-05 0.918632234762726 7.09449213009105 9.93529823495285 -0.94315351079455 0.208885274577890
AT1G17455_at 4.63016973986154 4.86368578234781 4.41897564409021 4.78347168451925 5.14742893737571 4.77350464717739 3.88688668842358 3.94784147715621 3.77125392462078 3.7054201237667 5.11210288963859 4.41652393032638 3.96403447851244 4.60673197425872 4.59179425828532 4.08079180107348 4.24137687867732 4.06213798073155 3.22125657136108 0.191468014252119 0.192810411139055 0.185907885916345 0.188070632034952 0.197304803680894 0.191709445308385 0.188906915216803 0.190652723753504 0.190817712371815 0.188708129331461 0.191316517382755 0.191867788609376 0.192291328479336 0.193653095271217 0.185907885916345 0.188296559910144 0.192411175729061 0.193926766782902 0.190615484021687 1 1 + 5997931 5998177 5998071.636 5997173 5998468 + gene protein_coding_gene FALSE TRUE AT1G17455.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72630.1); similar to Os11g0621500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068300.1); similar to hypothetical protein [Oryza sativa] (GB:AAD27669.1); contains InterPro domain Protein of unknown function DUF1313; (InterPro:IPR009741) 0.633579603515905 6.2705285250538 6.38296039797846e-05 0.92163565186411 7.09187109425153 8.5317023987127 0.633579603515905 0.0995511098913683
AT1G50630_at 2.35234594413204 2.67231299869462 2.76874706003579 2.8395378865618 3.60281720060146 3.16038964502095 3.37034529708392 3.43370938613835 2.78744900835844 2.02083152673317 4.00462340871727 3.33309335744619 3.37326900759938 3.46283899281942 3.12030803919251 3.14423114683723 3.16808455319574 3.68465424299506 2.08113221653041 0.251050943709757 0.256346939826055 0.257493941575774 0.258109188989074 0.256451643154953 0.258389045506954 0.255896821630772 0.254112234593289 0.262789103937752 0.265695102351065 0.253553147668190 0.256645401335828 0.255866203375260 0.256455456012782 0.253549013418762 0.257002486818519 0.254677581726196 0.263178156422465 0.251050943709757 1 1|0 -|/ 18755337 18756061 18755762.1 18755124 18757337 - gene protein_coding_gene FALSE TRUE AT1G50630.1|AT1G50630.2 extracellular ligand-gated ion channel similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT3G20300.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1); contains InterPro domain Neurotransmitter-gated ion-channel ligand-binding; (InterPro:IPR006202) 0.625305733967891 6.26953066368994 6.39180386454822e-05 0.922848641963472 7.09078232992714 5.87895505768746 0.625305733967891 0.0959084195707387
AT4G16880_at 7.57135648015772 7.95717538224367 8.49478499562369 8.6723112000273 9.4070576079794 8.74810069869646 8.62128550689801 8.60439138403197 7.89928715548496 7.73784369035663 8.68939368947306 8.6396747774691 8.65382233674621 8.7275423826899 7.90701702520391 8.90718538042501 8.16752049288607 8.6426221982705 7.57081835350081 0.188244632533035 0.180508523600439 0.185025389107795 0.171211797872521 0.171211797872521 0.180682256040589 0.171211797872521 0.171211797872521 0.206635094316482 0.189226034746491 0.185185819053716 0.172218465908957 0.180045030707941 0.172857205110134 0.181475244289769 0.172556059330077 0.195526073198375 0.186722446238943 0.182366295589005 4 4 - 9496690 9498798 9497138.375 9496206 9498945 - gene protein_coding_gene FALSE TRUE AT4G16880.1 disease resistance protein-related similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16940.1); similar to TIR [Medicago truncatula] (GB:ABE91518.1); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) 0.72393782809844 6.268999677274 6.39651503087939e-05 0.923464875008058 7.09020290251145 16.6484730828787 0.72393782809844 0.135699730549685
AT4G32150_at 9.73054524178325 9.76822516434615 10.3189178003206 10.2120308369662 10.6819934982115 10.6637237244057 9.10066759126513 9.14076639282426 9.89930791987914 9.52944283665637 9.90166716293769 9.38099790913726 9.90199956329455 9.74372637288621 9.42063943380954 9.7655909357075 9.6855146371641 9.8626545277327 9.71364170064484 0.094756532279768 0.093599343813623 0.0954479124096657 0.0936834933897326 0.0949302698668024 0.0957768760667838 0.0953709712675578 0.094946040288498 0.0970444191051633 0.0960986736549407 0.0947582863460948 0.0929405562033647 0.0931786444297005 0.0941176650880537 0.0971474099259982 0.0922543686040271 0.105158370652072 0.0950573430047714 0.0979368960862445 4 4|0 -|/ 15526445 15527573 15527242 15526119 15527885 - gene protein_coding_gene FALSE TRUE AT4G32150.1 VAMP7C (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7C) AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs. Identical to Vesicle-associated membrane protein 711 (AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C) (VAMP711) [Arabidopsis Thaliana] (GB:O49377); similar to ATVAMP712 (Arabidopsis thaliana vesicle-associated membrane protein 712) [Arabidopsis thaliana] (TAIR:AT2G25340.1); similar to Lon (GB:ABE77680.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.513916683097443 6.26500396015748 6.43208631279766e-05 0.92853598011547 7.08584111820132 19.6630985997123 0.513916683097443 0.0210432607011771
AT3G48100_at 5.82435148272985 6.24783620010798 4.78418299892463 4.85820989091679 5.98534543272222 6.07000497328295 4.98912251347519 5.23652903581337 5.12312903652544 4.91619384538533 7.26400933434094 7.82502150308124 6.76497571329652 6.7585556062225 7.78025248562752 6.32587958229499 4.97066951029693 6.17071130581721 6.07361962572504 0.236714442346510 0.230577413434276 0.244258050756081 0.242892608267522 0.227183947513813 0.233995074487354 0.236258188249463 0.233516984034234 0.243373467675594 0.239896032480915 0.232707093461412 0.227048544112251 0.249511779484613 0.24199895616903 0.234639017852249 0.226287024345068 0.238169358514035 0.224929609386307 0.235631574199251 3 3 - 17770104 17771694 17771270.182 17769412 17771859 - gene protein_coding_gene FALSE TRUE AT3G48100.1 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Identical to Two-component response regulator ARR5 (Response reactor 2) (ARR5) [Arabidopsis Thaliana] (GB:Q9SB04;GB:O80364;GB:Q9SBH9); similar to ARR6 (RESPONSE REGULATOR 6), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT5G62920.1); similar to Response regulator receiver [Medicago truncatula] (GB:ABE82371.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.605752280086839 6.26334647475271 6.44690386792873e-05 0.930610573335513 7.08403098210141 11.5511929239970 0.605752280086839 0.0870787461583532
AT4G35920_at 5.38293178455802 6.23287160601918 3.38342447003556 3.81975765325454 5.19100583339725 4.51265572433778 6.78734938262127 6.13903932459684 6.00978412656924 6.36995375928394 6.47666164493315 7.18184013380161 5.6167605782275 6.00199426476363 7.05368239591999 5.62253265389107 5.64679379904139 6.20700812895387 6.66390740904201 0.253638281928211 0.239534667208940 0.246844833988831 0.249464897867036 0.238842439439917 0.242349996233801 0.244018698657498 0.243195029034805 0.266592380666065 0.244137043826899 0.238647642728600 0.239142164689271 0.238647642728600 0.240616010399035 0.243176525088896 0.238647642728600 0.259943271097519 0.246623630747325 0.238647642728600 4 4|0 -|/ 17012275 17013427 17012926 17011791 17015259 - gene protein_coding_gene FALSE TRUE AT4G35920.1|AT4G35920.2|AT4G35920.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17780.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM51833.1); similar to Os03g0157300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049013.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) -1.01540483460804 -6.26027912045129 6.47442173248305e-05 0.934518032866603 7.08067989308134 11.4680249548059 -1.01540483460804 0.231741399122474
AT1G52670_at 6.79596044314188 7.18194055082084 5.57787481256182 6.05352903151409 5.88688700731464 5.33358647732837 7.69980383767452 7.2352382006417 7.18439233192117 6.77601502171751 6.66581650409342 7.4263751063071 5.88711290826035 6.93237762971271 7.73343336583863 6.32339393214651 5.95758919562503 6.88394907884104 6.4888569714797 0.209636252970194 0.204248618687188 0.211465617158315 0.209848949117844 0.201196596846387 0.224726923959445 0.206322243750599 0.211192493548166 0.220333820614436 0.201166069720773 0.205276274126097 0.202718453506308 0.21257809327621 0.202656493496262 0.214239080298803 0.199773068659470 0.220132101257061 0.202667948355214 0.202469893369137 1 1|0 -|/ 19618818 19620372 19619623.3 19618610 19621240 - gene protein_coding_gene FALSE TRUE AT1G52670.1 biotin/lipoyl attachment domain-containing protein similar to biotin carboxyl carrier protein of acetyl-CoA carboxylase-related [Arabidopsis thaliana] (TAIR:AT3G15690.2); similar to Biotin/lipoyl attachment [Medicago truncatula] (GB:ABD28385.1); contains InterPro domain Hypothetical protein MTH865; (InterPro:IPR009108); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.802715951246515 -6.25988616547195 6.47795608021262e-05 0.934963401057088 7.08025047300136 13.2419412485293 -0.802715951246515 0.163917601107949
AT1G74160_at 5.5536748556097 6.06331326571643 4.9706862342534 4.98490565964626 5.32558234840904 5.63473118711363 6.3896888244159 6.59684072432173 6.37915933231524 6.50543538565687 6.29844778155805 6.42250613785423 6.41132992821223 6.1334724993494 5.66830445967434 6.35335204510435 5.91413595680818 5.88326293136243 6.68261050693278 0.203104395329346 0.201499913826161 0.209225793253638 0.205517909522101 0.213588905165073 0.213272227544256 0.206817611739063 0.20438204929933 0.219527602368729 0.201900522512144 0.210199740870736 0.207471318247109 0.205324301456405 0.203209769990775 0.206096579254654 0.201499913826161 0.211750140642908 0.211007012977455 0.206927120551184 1 1 + 27894229 27894783 27894476.545 27890087 27895092 + gene protein_coding_gene FALSE TRUE AT1G74160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18620.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96645.1); similar to Os07g0109400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058723.1); similar to Os07g0603300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060212.1) -0.654351667152459 -6.25256054472578 6.54422400193719e-05 0.944462407959575 7.07224022200587 12.0189294919984 -0.654351667152459 0.109232785817822
AT1G60550_at 7.54463122205653 7.26148066020057 6.01122591145325 5.76906815959297 6.85901809401635 5.7275319822132 8.4242931852295 8.145081110294 8.55286679153739 8.66444835219271 8.6049061156862 8.7427675135112 8.30154321388795 8.53785007169016 8.88373083878852 8.87077200169155 8.42681676157518 7.98791102044359 8.849384234835 0.171147798455868 0.169131790543057 0.176890891805659 0.166663366726898 0.167210002200117 0.207005406963953 0.166291349626142 0.163137277038003 0.184461590629866 0.161069508911627 0.161762881289447 0.172782291091133 0.159555445356463 0.160246589151106 0.168237477736070 0.164246999165576 0.160351650998361 0.171602361667823 0.164642313744969 1 1|0 -|/ 22309660 22310558 22310039.875 22309496 22311894 - gene protein_coding_gene FALSE TRUE AT1G60550.1 naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G16210.1); similar to Os01g0662700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043784.1); similar to Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase (ISS) [Ostreococcus tauri] (GB:CAL50544.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain Naphthoate synthase; (InterPro:IPR010198) -0.948261554160975 -6.24625436038068 6.60185086998069e-05 0.952713099046913 7.06533732887956 15.5845097831392 -0.948261554160975 0.211738220640816
AFFX-r2-At-GAPDH-5_s_at 11.8330879607615 11.8663966852763 12.2245371176056 12.2111045474856 11.8827699356422 11.5589520723748 11.9353856980086 11.8642065538372 10.8268984032690 10.7402051011655 11.6505678807789 11.8221124134765 11.7127299758042 11.6584801319700 12.0270665283142 11.5154358535855 11.4582481495036 11.3821912324087 10.3697317238600 0.0660214332375741 0.0664504692697644 0.0681124268807743 0.066380935471258 0.0658404874068713 0.0748732377130826 0.0700372315045286 0.0673875277118906 0.0735928672056016 0.0710597622885062 0.0659661880149769 0.0654964070868633 0.0685521785079289 0.0695382719426569 0.0668108681831794 0.0686721655079125 0.0767599553996811 0.067323584271136 0.0725804780277603 NA NA NA NA NA FALSE FALSE 0.55115698588577 6.24444070266518 6.61852465944121e-05 0.955053108357367 7.06335079770721 23.0715379531215 0.55115698588577 0.057711689546413
AT1G14790_at 5.54984009082618 5.6305548019962 5.6567922784407 5.59767623271552 5.3791770337296 5.23678026643961 4.07524796599865 3.35088227930501 5.27104042230486 4.30529861426248 5.89743331809227 5.61335788359799 5.57525355389712 5.59570014666205 5.02038005233962 5.88863289364945 5.41948660706756 5.02703091728783 5.1673598759635 0.227434969303850 0.221317396341156 0.230566623644421 0.227610021572236 0.226673963643688 0.239472866729498 0.233512798843990 0.240285296785708 0.22746221996636 0.223534349069063 0.227727853050344 0.227249065595941 0.226475822609034 0.240587469991624 0.228115785227354 0.229480971408789 0.223842394654175 0.227722195708515 0.232163768909330 1 1 - 5094312 5094819 5094481.364 5093956 5098027 - gene protein_coding_gene FALSE TRUE AT1G14790.1 RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). similar to RDR2 (RNA-DEPENDENT RNA POLYMERASE 2), RNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G11130.1); similar to RNA-directed RNA polymerase-like [Solanum tuberosum] (GB:AAU89756.1); similar to RNA-directed RNA polymerase [Solanum lycopersicum] (GB:CAA71421.1); similar to RNA-directed RNA polymerase [Nicotiana tabacum] (GB:CAA09697.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA dependent RNA polymerase; (InterPro:IPR007855) 0.703034142848569 6.24430471163141 6.61977670137382e-05 0.955167580241228 7.06320182164519 10.2692317315570 0.703034142848569 0.128921898563658
AT4G36670_at 10.0408579960390 10.5887941127240 8.97501425152507 8.88910077548485 10.5922612702408 10.0221787011629 4.14318823100091 4.2988343534966 6.76317317666339 6.61890132385908 6.5120574883371 7.12936446633095 4.74179007461191 6.17041150230980 4.95768454409704 5.16008245701137 5.17168096927717 5.60485736250225 6.31547491568105 0.261085081918103 0.262562974982444 0.265448252182052 0.269906802104656 0.264360154894883 0.264540827512381 0.271600667338023 0.262790759534549 0.287249313706153 0.265765579850386 0.268047527844918 0.268041369394522 0.269232832253489 0.273897203127013 0.275856730196918 0.268102766692552 0.271722926023523 0.266893489419306 0.26101725104767 4 4 - 17287788 17288206 17287954.091 17287503 17289594 - gene protein_coding_gene FALSE TRUE AT4G36670.1 mannitol transporter, putative Identical to Probable polyol transporter 6 (PLT6) [Arabidopsis Thaliana] (GB:Q8GXR2;GB:O23213); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT2G18480.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE78857.1); similar to putative polyol transporter 1 [Lotus japonicus] (GB:CAJ29288.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.733430689473406 6.24399384680653 6.62263972236071e-05 0.955514459142204 7.06286126217517 14.5671991681897 0.733430689473406 0.140252767445179
AT2G39900_at 7.26604412207272 7.07107627700692 4.21135189273165 4.08247238527959 4.38265276787547 5.19257322707214 3.8336887231425 3.91836581676111 4.13752039427941 4.30674087108363 7.25947143853058 7.56605669524875 5.75817746319915 6.66604324237864 8.5104938456165 5.07839630244517 5.47109466797642 7.07019843066025 3.9022199045577 0.206745297754181 0.208448803441394 0.215592635412438 0.222033533715689 0.211378179978750 0.217523527569925 0.216537918521286 0.211838890191761 0.213444153298740 0.217278655061602 0.206167870083047 0.206843845786052 0.213527887909942 0.213892443174202 0.215164930528211 0.206452028353006 0.208265136878352 0.206167870083047 0.209472273767604 2 2|0 +|/ 16666257 16667258 16666782.2 16665734 16667515 + gene protein_coding_gene FALSE TRUE AT2G39900.1 LIM domain-containing protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G55770.5); similar to LIM domain protein WLIM2a [Populus tremula x Populus alba] (GB:ABK58469.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) 0.750983310471962 6.24346050583715 6.62755480257748e-05 0.956157331367854 7.06227693649989 10.3887707685247 0.750983310471962 0.146613535954992
AT4G26900_at 7.10528508876625 6.78184022384108 6.03593848165229 5.61565603421606 6.4983613853627 5.99852237341528 7.41706061065527 6.77907234836166 7.2354894081764 7.23328252539175 6.45735780023861 7.41126467752687 5.94600701634783 6.46763027547814 6.95839689621452 6.36575425120106 6.53399294052311 6.53510310506002 7.20154941205337 0.222128384433748 0.219489741147188 0.221530224475149 0.219675340169923 0.218726110332638 0.222943011638873 0.225684191120599 0.216329131449603 0.217726050608476 0.216639604115543 0.218745837252454 0.217164443043205 0.217993574891916 0.223551536525130 0.221196543154940 0.216329131449603 0.241318032888102 0.228369118723735 0.216329131449603 4 4|0 +|/ 13518020 13519426 13518895.125 13515484 13519861 + gene protein_coding_gene FALSE TRUE AT4G26900.1 AT-HF (Arabidopsis thaliana HisF protein) encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway Identical to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] [Arabidopsis Thaliana] (GB:Q9SZ30;GB:O80330); similar to Os03g0256400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049598.1); similar to Glutamine amidotransferase/cyclase (ISS) [Ostreococcus tauri] (GB:CAL55613.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain Histidine biosynthesis, HisF; (InterPro:IPR004651); contains InterPro domain Histidine biosynthesis; (InterPro:IPR006062); contains InterPro domain Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; (InterPro:IPR010139); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) -0.811348538730607 -6.24225167291335 6.63870942335218e-05 0.957700221412785 7.0609523649666 13.4329064777160 -0.811348538730607 0.167615031513047
AT2G13820_at 2.9883350391145 3.45762128254135 3.03673897343560 2.91885602696142 2.49926044830590 3.01383387265725 3.53663121095695 3.90678427676939 3.75376694284228 3.77527585261923 6.21610731076844 7.23467418548775 4.97856214872538 6.03425187797581 7.65190032751916 5.24325141849571 4.94108936377349 6.2901552075206 4.51501947065279 0.309463377721141 0.309463377721141 0.325032097935945 0.321501239248439 0.324653070668233 0.32401395242148 0.31334930489671 0.312328486680945 0.318025020118551 0.311838190393484 0.3183228836728 0.320683544540168 0.309463377721141 0.320429631924803 0.32716562345963 0.309463377721141 0.318169950457477 0.317519269463135 0.309463377721141 2 2 - 5781391 5783328 5782575.545 5781228 5783371 - gene protein_coding_gene FALSE TRUE AT2G13820.1|AT2G13820.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Identical to Nonspecific lipid-transfer protein-like protein At2g13820 precursor [Arabidopsis Thaliana] (GB:Q9ZQI8;GB:Q3EC14;GB:Q84WL8); similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G64080.1); similar to xylogen protein 1 [Zinnia elegans] (GB:BAD24657.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.726945467994844 6.24106582673013 6.64967144285509e-05 0.959215105631847 7.05965273790541 8.21397584237849 0.726945467994844 0.138002286061592
AT4G04910_at 8.52589200619457 8.67857531595677 8.52936811054718 8.60598207386843 8.69322219064084 7.8337439193684 8.03083240192956 8.13104711353936 6.7759482008696 6.79550512816213 8.40050513989072 8.75790414226291 8.24492748190558 8.17553635578982 8.32796923947402 8.0769154790189 7.92256074121591 7.89898876482475 6.72273935617883 0.186164084868898 0.186835261613358 0.198991341911257 0.191685789823894 0.187860742787171 0.192870070874933 0.187092397271154 0.182273147994166 0.216236206733046 0.195134895712132 0.188340168965744 0.182992385385985 0.186264423230848 0.196179155859049 0.184880402205453 0.184114643052773 0.203761123836068 0.189705422103951 0.196866774197186 4 4|0 -|/ 2489701 2490950 2490269.667 2489415 2495764 - gene protein_coding_gene FALSE TRUE AT4G04910.1 NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR); ATP binding / nucleoside-triphosphatase/ nucleotide binding N-ethylmaleimide sensitive factor Identical to Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion protein NSF) (N- ethylmaleimide sensitive fusion protein) (NSF) [Arabidopsis Thaliana] (GB:Q9M0Y8;GB:Q9ZPH6); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to AAA+-type ATPase (ISS) [Ostreococcus tauri] (GB:CAL52796.1); similar to Os05g0519400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056063.1); similar to N-ethylmaleimide sensitive fusion protein [Nicotiana tabacum] (GB:BAA13101.1); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase VAT, N-terminal; (InterPro:IPR003338); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.767462443589396 6.23924387397957 6.66655139813975e-05 0.961583373667677 7.05765550120097 15.8737800480646 0.767462443589396 0.152634584279544
AT2G34720_at 8.69515698490909 8.86107152555055 8.22764473650238 8.67046859429232 8.97780704231705 8.33556249640366 9.64566828733461 9.70284769267214 9.21423495042201 9.2115233849851 8.49735089271265 8.53992246624953 8.86270170300087 8.72976239152162 7.85778182434472 8.69987029744643 8.74680120234894 7.87324688038252 9.3473500448512 0.139257206587006 0.133154573209293 0.135052934120708 0.134213531490924 0.136414896609850 0.152044135858808 0.138109746339433 0.136341383022999 0.134265355362443 0.133574743450858 0.133499519140194 0.133154573209293 0.138265077603160 0.138910707897235 0.151863793663462 0.13642791787393 0.142022160106800 0.148353561332213 0.133154573209293 2 2|0 -|/ 14657106 14657679 14657414.143 14656846 14658695 - gene protein_coding_gene FALSE TRUE AT2G34720.1 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-4 (AtNF-YA-4) (NFYA4) [Arabidopsis Thaliana] (GB:Q8VY64;GB:O64585); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT1G30500.2); similar to CCAAT-box transcription factor complex WHAP5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99388.2); similar to Os12g0613000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067261.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) -0.727544245703137 -6.23749908559483 6.68275940455728e-05 0.963854388919297 7.0557423196538 17.7563446703329 -0.727544245703137 0.138375373260625
AT3G48200_at 9.25979068245592 9.21845717024772 8.99544814968042 8.91641775969284 9.33611542856452 8.83079800469762 10.2220362977861 10.0734125465875 9.52723198327117 10.0706064874797 9.24664310811876 9.16758219415209 9.34673417471855 9.38615162489971 9.11525107965925 9.44748805749793 9.5556237951259 9.22196506217795 9.99780132757288 0.134042725617735 0.133748107769948 0.149745450023886 0.141352986900222 0.133748107769948 0.144405907128682 0.136561209815680 0.138051815541302 0.146913318483261 0.134075857470609 0.135013538265004 0.134007124181533 0.133748107769948 0.137357469674432 0.147755827150345 0.133748107769948 0.145482372525949 0.142420984279847 0.133748107769948 3 3 - 17843936 17844501 17844277.636 17843758 17848499 - gene protein_coding_gene FALSE TRUE AT3G48200.1 similar to Os05g0594500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056507.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93579.1); contains domain gb def: Hypothetical protein At3g48200 (PTHR12326:SF1); contains domain UNCHARACTERIZED (PTHR12326) -0.614006358837289 -6.23172801300708 6.73667000649685e-05 0.971562548336976 7.04941055326797 18.9446310815399 -0.614006358837289 0.092448933970751
AT3G14280_at 6.17059900079925 6.63214497595308 7.44428748090546 7.85610310332334 8.64496759953637 7.45630980533697 6.58846363280992 5.82647879635444 3.52983910307068 3.80890053241411 3.68161495115026 2.73132974459767 4.47341231381975 4.74408264111351 2.858500504705 4.43803435692811 6.23928084595676 4.78621149538516 3.26938548630873 0.340394349672175 0.329168803120213 0.328685026914172 0.336050808337628 0.335621718545409 0.33447314838984 0.334581147756617 0.333553470162127 0.336602226455572 0.326800489270899 0.327707338402683 0.336140932866007 0.326800489270899 0.329631132324908 0.344699907524542 0.326800489270899 0.338708021980406 0.326800489270899 0.331836280813899 3 3|0 -|/ 4761707 4762264 4761972.2 4761439 4762402 - gene protein_coding_gene FALSE TRUE AT3G14280.1 similar to hypothetical protein MtrDRAFT_AC157534g12v1 [Medicago truncatula] (GB:ABE86457.1) 1.12700602261944 6.22994148721193 6.75345300264529e-05 0.973915457511477 7.04744929899462 10.9674693313631 1.12700602261944 0.266759430102139
AT2G35920_at 5.23851097668121 5.56383686422754 4.25699828414546 4.08409778739747 5.47597735356847 5.64334157749593 4.94262180818624 5.09584504106602 5.46303484884690 5.50375578736469 5.26818774337644 5.04293623374462 4.54350673927349 5.39102931210157 4.15794790779908 4.88954670717325 3.97217884714328 4.51082651413699 5.63437037330293 0.232337495402230 0.224874288888323 0.236660181403651 0.234183861921877 0.228576550673808 0.235230596132747 0.237428248012378 0.234934108754851 0.237817633515183 0.224874288888323 0.224874288888323 0.224874288888323 0.232781327854519 0.237990129298002 0.241008616878802 0.227055568261809 0.24502988499394 0.226465440306648 0.231357556062945 2 2 + 15086812 15087539 15087170.636 15082676 15087891 + gene protein_coding_gene FALSE TRUE AT2G35920.1 helicase domain-containing protein similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G04895.1); similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G01130.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48650.1); similar to putative helicase [Oryza sativa] (GB:AAL58955.1); similar to putative ATP-dependent RNA helicase [Oryza sativa] (GB:AAG16852.1); similar to putative DEAD/H box polypeptide 36 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52491.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.578400128899834 -6.22720213011607 6.77927399533125e-05 0.977571310126766 7.04444096047519 10.1655238801453 -0.578400128899834 0.0748788267738624
AT4G29410_at 9.035670410289 9.05895030420501 8.58610191482877 8.37066615361694 8.45306701521455 8.2320029110954 9.25371173289819 9.08433033020637 8.29724648277175 8.18700098238214 7.71089152763103 8.42455962885304 7.8537456097773 7.61149664072839 8.6662090480834 7.53373705634394 7.62238431910233 7.86352612389019 8.48330613845273 0.156480444229159 0.159576160509047 0.158687794365952 0.161651074841949 0.156898277407995 0.163206910558654 0.159355362580227 0.159814689917830 0.166969609531725 0.155755346205526 0.160191548754917 0.154587435707475 0.161426169652157 0.157001807538932 0.155686982535378 0.157110125749657 0.168614875478769 0.163862898919787 0.157708668798718 4 4|0 -|/ 14468467 14469946 14469354.2 14468250 14470173 - gene protein_coding_gene FALSE TRUE AT4G29410.1|AT4G29410.2 60S ribosomal protein L28 (RPL28C) Identical to 60S ribosomal protein L28-2 (RPL28C) [Arabidopsis Thaliana] (GB:Q9M0E2); similar to 60S ribosomal protein L28 (RPL28A) [Arabidopsis thaliana] (TAIR:AT2G19730.3); similar to unknown [Solanum tuberosum] (GB:ABA46763.1); contains InterPro domain Ribosomal L28e protein; (InterPro:IPR002672) -0.554702659639199 -6.22637436550553 6.78709720278122e-05 0.978631545669024 7.04353166332367 16.8759809026293 -0.554702659639199 0.0610649854778482
AT3G02630_at 8.20596960713059 8.49140485729414 8.16126733407015 8.1733561234352 8.51293854354284 8.3000914035554 8.20325780522274 8.02963797738191 7.22419826910364 7.47892655413207 8.57813517259043 8.62585551048166 8.25880598134049 8.28782774751086 8.8041375040775 8.03761036587995 8.11456374872811 8.51558362896998 7.26696810475457 0.140681662887242 0.136970203985594 0.139971684063226 0.144595307696688 0.139174513755486 0.143947438094459 0.141761213899236 0.13334107032528 0.147143866657398 0.145173010061214 0.143063990918799 0.136118476601675 0.132920524452796 0.146159462101337 0.137212232527877 0.135264029598652 0.143075305166869 0.136994595412265 0.145404888905012 3 3 + 563360 564411 563997.909 562038 564877 + gene protein_coding_gene FALSE TRUE AT3G02630.1 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT5G16240.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:Q41319); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) 0.566898218755415 6.22429133352714 6.80682669426911e-05 0.98140827277972 7.04124293851249 16.1228300898429 0.566898218755415 0.0685845065065028
AT4G36030_at 5.51136834257753 5.52090615983176 5.59885516516753 5.90005623128671 5.79668527940103 6.23108861404634 3.98682812877125 4.33727358506593 5.62317078666538 4.38248573258031 5.6722809518901 5.24498046183886 5.28765548806557 5.53747079549628 5.06794649349135 5.50270026744073 4.4943759025426 5.21293127432236 4.96470524206039 0.210416804974054 0.207467833541416 0.210329280734014 0.207467833541416 0.212430007491023 0.21458882568795 0.212037046210062 0.213725342412909 0.225660815624005 0.214599106176836 0.208897294273422 0.212330703586056 0.216938887283269 0.212061051082277 0.213897387834778 0.207467833541416 0.219636673639811 0.213192456054082 0.210197410794757 4 4 - 17045088 17045659 17045420.545 17044948 17047318 - gene protein_coding_gene FALSE TRUE AT4G36030.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G34940.1); similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66200.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE92291.1); similar to Armadillo [Medicago truncatula] (GB:ABE77933.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34223.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.652499692848868 6.22263884187264 6.82252193550358e-05 0.983602987441552 7.03942673914172 10.4817143340125 0.652499692848868 0.109767868972263
AT2G14660_at 4.51102213738791 4.61848269649739 3.58573645513276 3.9309949930154 4.24511963475628 3.61072073769657 5.12915916667655 5.13030801823805 4.47046833780818 5.10532581869243 4.37992013426208 4.62786574765394 4.38491731712255 4.63294968567438 4.57888772336321 4.40517043355474 4.1028990727725 4.24619900561792 4.83428338250638 0.205536511804469 0.202674929070253 0.202792119897253 0.210208608062939 0.209612451156115 0.209693570096335 0.199578697686759 0.198025851870259 0.201504761493250 0.195033944460162 0.195033944460162 0.203643158103661 0.196520947384623 0.19864029010256 0.207662719904553 0.195745018243922 0.205215472926978 0.199732476135780 0.211625217899666 2 2 + 6279597 6279946 6279731.273 6279573 6280165 + gene protein_coding_gene FALSE TRUE AT2G14660.1 similar to Protein of unknown function DUF589 [Medicago truncatula] (GB:ABE89772.1); contains InterPro domain Protein of unknown function DUF589; (InterPro:IPR007628) -0.693804044608028 -6.22143972318507 6.83393530215167e-05 0.985180113158185 7.03810853383599 8.95679813976095 -0.693804044608028 0.126367178162650
AT1G65010_at 4.97546901239541 4.81340180947073 3.14848262274474 3.18892918686785 3.86747983057001 3.34513648605463 5.56151359048145 5.38337483929104 6.26960486750511 5.27700287488944 7.20858464962125 7.59477847663102 5.68850330480378 6.17343265048848 7.19768529461901 5.82106508703378 4.62428461038604 6.54688115823198 5.91114232090532 0.265707722740580 0.255818097270405 0.269203146092022 0.260354304085372 0.272868126829773 0.263626596501723 0.256911070760430 0.258691159191443 0.263772907884699 0.255818097270405 0.2593136975114 0.268189026526261 0.258787158293116 0.263371856752702 0.259100425427643 0.258902634503189 0.261338299914171 0.263189568457752 0.263104103248132 1 1 + 24157126 24157657 24157442.182 24153577 24157937 + gene protein_coding_gene FALSE TRUE AT1G65010.1 similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE94710.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.629140449236692 -6.22137795061473 6.83452381417289e-05 0.985196607813022 7.0380406198401 10.3735493847729 -0.629140449236692 0.0997848388546634
AT1G26380_at 4.65320647472852 5.65495707382777 5.31607353926904 5.72063340963405 5.44457211163139 5.41277594770382 1.23691500247539 1.19373110443383 2.73939842183187 2.15616817174404 2.14165289022657 1.80096611720107 1.38645872911651 1.85713326445733 1.78883246513971 1.21267445139094 1.71676952225992 1.45532495832940 1.77761581909439 0.350777821623893 0.346024711818343 0.344185769632007 0.357931773592368 0.360565300196561 0.347539191471089 0.335768987653908 0.339769430235099 0.34627127332334 0.335768987653908 0.335768987653908 0.335768987653908 0.336754595082024 0.337519890522784 0.335768987653908 0.338916612182498 0.34499143345968 0.349179581912078 0.335768987653908 1 1 - 9126909 9127440 9127254 9126724 9128515 - gene protein_coding_gene FALSE TRUE AT1G26380.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26410.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26420.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26390.1); similar to FAD linked oxidase, N-terminal [Medicago truncatula] (GB:ABD32603.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.867196875200804 6.21853350943279 6.8616818119939e-05 0.989042816380802 7.03491267527344 6.27629342662395 0.867196875200804 0.187191142569277
AT1G75840_at 6.38158728260146 6.59182178863412 6.00187837477128 6.22694397384247 7.36806874016522 7.24694461392918 6.2504748600922 6.25667598521935 6.42775050759805 5.07473766712326 7.09959359448639 6.25558837964645 6.61612905696111 6.56207877987573 6.64268415042509 5.84967591252976 5.92404567162259 6.34734117607383 5.46845084293196 0.199421785981862 0.203400995053073 0.203759016368103 0.211226639519986 0.208479717152428 0.205210203681948 0.198818007388612 0.200813569306114 0.199363919135290 0.204640381564246 0.19765203674505 0.203015582055227 0.203348561376953 0.200316320672243 0.19765203674505 0.201599463180393 0.213187878179611 0.209382977077379 0.203155205677684 1 1|0 +|/ 28479649 28481010 28480547.5 28479368 28481463 + gene protein_coding_gene FALSE TRUE AT1G75840.1 AT1G75840.1/ATGP3/ATROP4 (RHO-LIKE GTP BINDING PROTEIN 4); GTP binding / GTPase Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control. Identical to Rac-like GTP-binding protein ARAC5 (GTPase protein ROP4) (ARAC5) [Arabidopsis Thaliana] (GB:Q38937;GB:O48545;GB:Q9LQT0;GB:Q9ZRD5); similar to ARAC4/ATRAC4/ATROP2/ROP2 (rho-related protein from plants 2), GTP binding [Arabidopsis thaliana] (TAIR:AT1G20090.1); similar to RAC-like G-protein Rac1 [Gossypium hirsutum] (GB:AAD47828.2); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.547990682095893 6.21582633972649 6.88763637462632e-05 0.992715030674892 7.03193439432983 12.5751103337838 0.547990682095893 0.0572815065732478
AT3G55050_at 6.44693952682221 6.4818118235858 6.69768554251341 6.82111260598986 7.32676947375627 7.25266796295764 6.37662280170706 6.68626028501247 6.8229179721664 6.89570798162272 8.08107045992316 7.61846698588995 7.38699664245156 7.16743403400819 7.57613144949901 7.30952721927196 7.10191583615742 7.06997635431803 6.79784737931451 0.233901349712605 0.228315919029214 0.234318809194060 0.235657954181346 0.237249343893530 0.238453614779372 0.234710307601827 0.241669215543298 0.238730951074167 0.229211001229725 0.229133249803440 0.229262451263389 0.226316900219220 0.246411068731318 0.230831041342672 0.228358672579937 0.242012620698123 0.233223012237448 0.226316900219220 3 3|0 -|/ 20411683 20412260 20411910.889 20411465 20413572 - gene protein_coding_gene FALSE TRUE AT3G55050.1|AT3G55050.2 serine/threonine protein phosphatase 2C (PP2C6) similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT3G12620.2); similar to protein phosphatase 2c-like protein [Thellun (GB:AAM19705.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.55088285767222 6.21242090373101 6.92043463195536e-05 0.997373039157407 7.02818613210832 13.8876159113220 0.55088285767222 0.0594000452348596
AT4G16180_at 6.97920584326653 6.7910639124428 6.8393128221529 7.32766798530283 7.86342237040398 7.75711120010577 6.50991547551683 6.60576578673331 4.31388070111367 4.35418690722001 4.41202270574777 3.89884057131176 5.14173792533696 4.56862668449406 4.78611960979871 4.68021326070482 5.78183416649616 4.34968960901434 3.92460597174647 0.340218676781359 0.32738814005129 0.337581754484334 0.32738814005129 0.345809654668955 0.338039393368854 0.362188651100233 0.343711040640081 0.338907561783277 0.334554518051077 0.32738814005129 0.331216941049573 0.32738814005129 0.32738814005129 0.327599232673779 0.329486007784826 0.32738814005129 0.334163158334519 0.335234350125613 4 4|0 -|/ 9168585 9169707 9169152.5 9168338 9170449 - gene protein_coding_gene FALSE TRUE AT4G16180.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95572.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95573.1); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) 0.615109273293934 6.21134521933182 6.93082938258756e-05 0.998801822324694 7.0270017444268 11.5341548878105 0.615109273293934 0.0938935183950786
AT2G39980_at 7.96037312631052 8.2270318542143 8.8193394852696 9.11430920104332 9.07283428992968 8.92497444146827 8.3707495836649 8.69686700148682 7.35181773392261 8.4509214071501 7.51245768416828 7.32047559109638 8.65174094924452 8.16624431453871 7.11354618015552 9.33193250507364 9.36682817351871 8.09274573523264 7.11558670655193 0.17365050725769 0.170030916723072 0.179300714928671 0.174361540060218 0.176634305544238 0.184090778925986 0.179627393093903 0.175340636013168 0.184224921835892 0.177876745789391 0.174482094423141 0.176813247728105 0.179729359257266 0.174552472965051 0.186175427451868 0.173058613856510 0.180855093803231 0.175362800768682 0.182043265245228 2 2 - 16695567 16696062 16695864.455 16694751 16697034 - gene protein_coding_gene FALSE TRUE AT2G39980.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.612081702714461 6.20888523218432 6.95466397869234e-05 1 7.02429241642193 16.5652790433418 0.612081702714461 0.0926010825356981
AT4G22620_at 3.53684487483716 3.63563842370409 4.31255873353128 4.29775981355569 4.15892062694257 4.54536779716271 4.76730836671623 5.21315452271242 3.46039087311205 4.2645814948006 5.34759652476528 4.93910779168851 4.76166647635074 4.99919334404203 4.94749711580739 5.19088461676314 6.00624554822897 5.20088775071476 4.10043549262882 0.189243744922888 0.194505968697393 0.191041039519555 0.186913336054636 0.189196020665658 0.194479777170824 0.188953040080429 0.189356024729979 0.191425900595779 0.188971473149767 0.193393356100613 0.184398307112092 0.187210962566712 0.185722723617604 0.190996690288009 0.184398307112092 0.202498850868222 0.192258675282638 0.18707332549692 4 4 + 11907720 11908085 11907880.727 11907642 11908124 + gene protein_coding_gene FALSE TRUE AT4G22620.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G12410.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); similar to Os04g0537100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053425.1); similar to Os02g0643800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047561.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.636373735835105 6.20787279005829 6.96449888400818e-05 1 7.02317705264907 8.86641290300807 0.636373735835105 0.103558343439719
AT1G61380_at 7.70705091754987 7.78901689263524 7.31406882016377 7.6259117565813 8.01720287469964 7.52856811301395 6.54244402148138 5.88713915377604 6.46695698251926 6.39500501511067 6.70588018618549 7.01342336867593 6.73476167109803 7.26609544490807 6.25006808416475 7.91269409316635 7.4462249514522 6.59593530837343 5.45895656267637 0.208207612602396 0.207066372804606 0.220538610323224 0.205742863714032 0.207752141637922 0.218631495573503 0.209763038286433 0.214987723202201 0.231989696663759 0.211611108500651 0.207843787094338 0.207223179304617 0.207139428178629 0.202297050239279 0.220275387604577 0.202297050239279 0.215601723327775 0.217368692545882 0.212829320360839 1 1|0 -|/ 22650046 22650449 22650180.6 22649737 22653186 - gene protein_coding_gene FALSE TRUE AT1G61380.1 S-locus protein kinase, putative similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT1G11280.4); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G61360.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.761843839910817 6.20661993251054 6.97668978636039e-05 1 7.02179658981024 13.8502294397069 0.761843839910817 0.152066988025958
AT3G04780_at 7.16903096958154 7.00112992991229 7.15919521977673 7.53366467266744 7.72178932798643 7.58291716791396 7.08055197176378 6.998266571738 6.143816274073 6.24701157441754 7.14221121875623 7.28672299028754 6.76520253578651 7.30590123249392 7.17040361784637 7.09112489969824 6.9808138870027 6.40916900059537 6.5040615998752 0.209525495081092 0.205122523930558 0.210760482530296 0.209336637212162 0.212651961478017 0.224164625972478 0.200496477332030 0.217851080552116 0.221298810207932 0.209445781521282 0.212054906636311 0.204543973711987 0.209854035416587 0.200496477332030 0.214154619136476 0.200496477332030 0.206886024798574 0.213160820883578 0.217388604957834 3 3|0 -|/ 1311642 1312992 1312081.75 1311253 1313096 - gene protein_coding_gene FALSE TRUE AT3G04780.1 Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein. Identical to Protein At3g04780 [Arabidopsis Thaliana] (GB:Q9SQZ9;GB:Q93Z56;GB:Q9CAU6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25950.1); similar to Os03g0795500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051549.1); similar to thioredoxin [Bombyx mori] (GB:NP_001040348.1); contains InterPro domain Protein of unknown function DUF1000; (InterPro:IPR010400) 0.578896963178512 6.20389998547609 7.0032347772206e-05 1 7.01879868406516 13.939438306716 0.578896963178512 0.0763158302400078
AT1G04980_at 6.75385607994563 6.89269557165684 7.76908167437648 8.43915649657264 5.37353798382901 4.96786105046931 3.47658979393268 3.94066109715304 3.22797831193397 2.95870710803177 3.08904103871713 3.64078002632846 3.37376150751461 3.21039889501520 3.29619953102708 3.41093199503422 3.29484233926179 3.10976276384115 3.14431943903390 0.275817202076818 0.277606940213266 0.288317250660348 0.290377113548007 0.285627532303116 0.279396963122920 0.278915033104266 0.273622497797591 0.270375785919931 0.280227322046847 0.271661142223338 0.272584092310067 0.270375785919931 0.271852557931168 0.270375785919931 0.270375785919931 0.276105699042562 0.270375785919931 0.273962207500579 1 1|0 -|/ 1413882 1414733 1414415 1413643 1416143 - gene protein_coding_gene FALSE TRUE AT1G04980.1 ATPDIL2-2 (PDI-LIKE 2-2); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to Os09g0451500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063331.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09966.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) 0.782169237366195 6.20219187913943 7.01996001897502e-05 1 7.01691537185433 9.15845482603812 0.782169237366195 0.159380679115524
AT4G25470_at 4.13642662732163 4.39022151266996 3.75797693068375 3.76641069409386 4.95057986794142 4.93575965426152 2.81334034453265 3.13540763165194 2.99675743142332 2.54495299952908 3.45351297794954 3.23748316398185 4.03488139571943 3.28825337652917 2.94530964868118 2.59285359499992 3.3510520378653 2.94127090714212 2.93793965784917 0.266619322741253 0.265923044424182 0.264139576120654 0.264332030366202 0.271777158876659 0.269707379152662 0.259564661471861 0.271056072891869 0.261928577667855 0.261987083942636 0.258416846800359 0.261462574831656 0.264915219681997 0.258416846800359 0.266212571837134 0.26982750816495 0.269886823675355 0.262501937845451 0.270237050143595 4 4 - 13015448 13016004 13015643 13015287 13016230 - gene protein_coding_gene FALSE TRUE AT4G25470.1 CBF2 (FREEZING TOLERANCE QTL 4); DNA binding / transcription factor/ transcriptional activator Encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF2). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature, abscisic acid, and circadian rhythm. Overexpressing this gene leads to increased freeze tolerance and induces the expression level of 85 cold-induced genes and reduces the expression level of 8 cold-repressed genes, which constitute the CBF2 regulon. Mutations in CBF2 increases the expression level of CBF1 and CBF3, suggesting that this gene may be involved in a negative regulatory or feedback circuit of the CBF pathway. Identical to Dehydration-responsive element-binding protein 1C (DREB1C protein) (C- repeat-binding factor 2) (C-repeat/dehydration-responsive element- binding factor 2) (CRT/DRE-binding factor 2) (DREB1C) [Arabidopsis Thaliana] (GB:Q9SYS6;GB:O65613;GB:O82776); similar to CBF1 (C-REPEAT/DRE BINDING FACTOR 1), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G25490.1); similar to C-repeat binding factor-like protein [Chorispora bungeana] (GB:AAY21899.2); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.568929932979567 6.20002480132998 7.04124085262646e-05 1 7.01452528829495 7.01432899162413 0.568929932979567 0.0710220110786805
AT1G10200_at 9.23911815804204 9.11103513705384 8.18472820810107 8.19948840931881 9.18386054371986 8.78740676183315 8.14743355682425 7.74157416626282 8.2870825139444 7.6819224076922 9.26840857855049 9.32442868093112 9.12919318921978 9.37918153941603 9.42605705821999 8.96084923540568 8.94402963019978 8.92713101387295 7.85806521680474 0.139172284560323 0.134919381109281 0.146655263857833 0.142496947254678 0.143544493117416 0.146435741386776 0.145799139212431 0.144708098510151 0.154439668006023 0.164917863507007 0.134919381109281 0.134919381109281 0.13688455291887 0.135750567244676 0.134919381109281 0.135093064710375 0.13965220784282 0.142457323477728 0.162222454390633 1 1|0 -|/ 3346681 3347688 3347158.5 3346392 3347887 - gene protein_coding_gene FALSE TRUE AT1G10200.1 transcription factor LIM, putative similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39900.1); similar to LIM-domain protein [Brassica napus] (GB:ABB51614.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) 0.628316939555343 6.19312276075022 7.10948023105056e-05 1 7.006907603583 17.1304639069149 0.628316939555343 0.100687565353708
AT2G39870_at 4.59297407934092 4.84690015665677 5.06745041188115 5.0001906836355 6.17909581399016 5.97753180374927 5.49340570246266 5.73820089676902 5.5356063119612 5.11910253426143 6.8009276887905 6.08317700806557 7.15896140572826 6.72910651653133 6.08424632572419 6.02081079032797 5.7770181013422 5.18048347816549 5.7913664216555 0.22001730927234 0.210289510201698 0.218571662637911 0.214918799043978 0.211625088563742 0.217022468564088 0.216522060645484 0.213120701790584 0.220250090377232 0.215514633911627 0.215297985886608 0.212441135513085 0.215963395310837 0.219966079907223 0.214415807465298 0.213543274322078 0.219336086770743 0.219869336192875 0.215123885929204 2 2|0 +|/ 16651283 16651957 16651541.5 16650461 16652455 + gene protein_coding_gene FALSE TRUE AT2G39870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55690.1); similar to Os01g0850000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044811.1) 0.567756647274203 6.18269293561679 7.21394315290614e-05 1 6.99538080273378 11.2176519453743 0.567756647274203 0.0712588299242157
AT2G45340_at 6.2120909243225 6.94709902812048 5.70030017693151 5.78730965517024 5.96441618681447 6.08199290621834 8.27973889331334 8.06024984103199 6.74180860883208 7.54822591422991 7.67058772808664 7.78979141647154 7.75052313710214 7.58392774322814 7.03037623800104 7.96324085422688 7.51283789494433 6.79955794160795 8.04758737374743 0.251114609203926 0.251114609203926 0.253412609116788 0.260888624417442 0.253525799224814 0.266745272800384 0.262857965570907 0.254307189253532 0.280941783537739 0.266194825508666 0.267154991147673 0.251114609203926 0.258772238147600 0.267392906999063 0.269597657366687 0.251114609203926 0.280069509720135 0.270212289761087 0.260532808326815 2 2|0 +|/ 18700866 18701510 18701204.8 18698796 18701776 + gene protein_coding_gene FALSE TRUE AT2G45340.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G22730.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G51560.1); similar to Os06g0134700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056717.1); similar to putative somatic embryogenesis protein kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68873.1); similar to Os01g0577600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043393.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.712279268403996 -6.18100098437213 7.23104350726902e-05 1 6.99350913213927 14.1083893688962 -0.712279268403996 0.135138661872435
AT2G36350_at 4.76264423563955 5.68164357882205 3.41973958933145 3.8321200978867 4.48264582676965 4.41462497444358 4.68535271593045 5.19948808889768 4.8183642509061 5.28089118796818 4.37048907035739 4.54244839697761 3.60752584293582 3.96672682122452 4.46515955299602 3.72425858579117 3.75164176747191 3.81284552206031 4.19152962104239 0.226608310717203 0.228071562926551 0.226101225270436 0.229763448901287 0.224862218834566 0.232462002503523 0.231619965865987 0.226851797446311 0.226934836027417 0.233286985844043 0.224862218834566 0.228259937663624 0.229820117347853 0.235164916080039 0.226133427068325 0.23023783521815 0.224862218834566 0.224862218834566 0.226916672231177 2 2 + 15248356 15248863 15248619.545 15245195 15249002 + gene protein_coding_gene FALSE TRUE AT2G36350.1 protein kinase, putative similar to KIPK (KCBP-INTERACTING PROTEIN KINASE), kinase [Arabidopsis thaliana] (TAIR:AT3G52890.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G03640.1); similar to H0321H01.14 [Oryza sativa (indica cultivar-group)] (GB:CAH66505.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.889228803854984 -6.18098853903637 7.23116945126048e-05 1 6.99349536303136 8.95664837093967 -0.889228803854984 0.196062570987230
AT2G15320_at 5.73443357466294 6.28866511340192 5.29868202774596 5.24173528330015 4.94941810440554 4.50280131329011 6.58849598600818 7.1016363583115 5.37568716063249 5.66596708348615 4.85846507562281 5.56602322746324 5.17651208236322 5.5248139479817 4.8472626686799 6.23826919267049 5.29978753981981 5.69313375173713 5.4211465327657 0.222388101304845 0.206164670525753 0.209211470032515 0.221335558520504 0.211300846329852 0.231856780494899 0.208532116779247 0.208449239336636 0.215594724441099 0.204650016427166 0.204474422035866 0.201975972100636 0.205647729989269 0.213281623795191 0.215713902116124 0.205496185910841 0.212999803494767 0.205391646689653 0.206071916980947 2 2 - 6673647 6674131 6673949.636 6673398 6674786 - gene protein_coding_gene FALSE TRUE AT2G15320.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66330.1); similar to Os02g0647300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047577.1); similar to brassinosteroid receptor [Pisum sativum] (GB:BAC99050.1); similar to Os01g0818700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044633.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.758607699539925 -6.17790355129592 7.26246128617236e-05 1 6.99008141171006 11.1573003175176 -0.758607699539925 0.152169587372788
AT2G30750_at 3.29684891169486 3.52646511397040 4.18614351270342 4.21592877311759 3.68628608204438 3.43801525184362 1.87811370859804 1.5669363231155 2.40151238002627 2.25670481784562 1.93049653349100 2.06294574643524 2.06640519553827 1.84830977662732 1.90564398476365 1.99246938156090 2.04104538152533 2.24653382329447 1.82604595413335 0.304043479141964 0.309516758193431 0.30264039177752 0.324519069717508 0.320076600944960 0.303630589815421 0.296297765852046 0.300834351806620 0.301688946182415 0.301650166885663 0.299848215791449 0.294176957470327 0.294176957470327 0.294176957470327 0.299748361156171 0.298607150801441 0.295911939800628 0.294176957470327 0.294176957470327 2 2|0 -|/ 13106609 13107052 13106786.222 13106413 13108490 - gene protein_coding_gene FALSE TRUE AT2G30750.1 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A12 (EC 1.14.-.-) (CYP71A12) [Arabidopsis Thaliana] (GB:O49340); similar to CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G30770.1); similar to CYP71A18 (cytochrome P450, family 71, subfamily A, polypeptide 18), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G11610.1); similar to CYP71A14 (cytochrome P450, family 71, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G24960.1); similar to Cytochrome P450 71A27 (GB:O65438); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.582406283909329 6.17317669674394 7.31068815203418e-05 1 6.98484733455407 5.31091834892244 0.582406283909329 0.0796954836388245
AT3G12700_at 4.19847035415611 4.21381442231327 1.94702296354665 1.89047207992287 1.5189772247378 2.13318853945072 2.35007279333515 2.09528863627596 2.31391659716776 2.63981463936032 2.53881990023341 3.52809024410111 2.41520886887344 1.76878833039864 3.23036645187029 2.56192036750947 1.77208547380183 1.66033217662193 2.29021035574335 0.245644157324199 0.260693960440705 0.234041230037529 0.236727838981561 0.234808019498087 0.231001945078690 0.238156901469229 0.231001945078690 0.236644849176024 0.238428219123669 0.234982942013783 0.231001945078690 0.23493831784494 0.234964560767792 0.232981072065168 0.231001945078690 0.238273695063067 0.238873190678313 0.239732397460354 3 3 + 4038481 4038993 4038759.182 4037077 4039141 + gene protein_coding_gene FALSE TRUE AT3G12700.1 aspartyl protease family protein similar to chloroplast nucleoid DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G25700.1); similar to Os01g0679500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043866.1); similar to Os05g0557100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056286.1); similar to chloroplast nucleoid DNA binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73477.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.661096035176578 -6.17232376834319 7.31942676065172e-05 1 6.98390247126269 4.96796271376735 -0.661096035176578 0.115520171058070
AT4G19050_at 3.71595348756116 3.59508271987017 4.27251865684416 4.39086266210842 4.77338574552683 4.0717030905813 3.96071190956445 3.93561816561296 4.24956315409988 3.51815004616985 4.97250539313279 4.77754526637832 4.23882979673726 4.71251358457672 4.54165202225342 4.62655730137949 4.13905924913899 4.72101434176396 3.62343035903685 0.210773266382741 0.216953985526512 0.226857164590719 0.214680612282406 0.216574317164779 0.219224503713100 0.210193290525577 0.213403723832499 0.218351478931165 0.215571700708857 0.209780389607938 0.209780389607938 0.214279893267837 0.209780389607938 0.218867395462561 0.213682751979638 0.216756570597698 0.219213266919230 0.218235410882144 4 0|4 /|- 10438224 10439225 10438750.714 10438224 10443797 - gene protein_coding_gene FALSE TRUE AT4G19050.1 mob1/phocein family protein Identical to Putative disease resistance protein At4g19050 [Arabidopsis Thaliana] (GB:O50052); similar to protein binding [Arabidopsis thaliana] (TAIR:AT5G45510.2); similar to Putative disease resistance protein At4g19050 (GB:O50052); contains InterPro domain Mob1/phocein; (InterPro:IPR005301); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) 0.684718867215461 6.17177250933759 7.32508058001063e-05 1 6.98329172680238 8.28360829096984 0.684718867215461 0.124983726424669
AT1G62510_at 9.3467696243998 9.80916002924475 8.81989870039345 9.34358133496528 10.1375512387476 10.3188190513786 10.7065324903813 11.1685323676659 10.0410910248177 10.5434003583337 9.46913947112497 8.83650265221253 10.0502998014433 8.94399671273413 9.24120767539513 9.3356006965034 10.5040523507685 10.2757256519343 10.8338659784004 0.119194036550225 0.110636256501111 0.121723828154268 0.118183523598931 0.109488941621964 0.110254222600286 0.114704861402838 0.111725863708391 0.113467826238417 0.114442657830020 0.116926307500971 0.115930333897196 0.114975299164209 0.116302653117674 0.116399110336053 0.109488941621964 0.115725108602959 0.109688329652999 0.112208897792837 1 1 - 23140356 23140672 23140487.818 23140036 23140856 - gene protein_coding_gene FALSE TRUE AT1G62510.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to ELP (EXTENSIN-LIKE PROTEIN), lipid binding [Arabidopsis thaliana] (TAIR:AT1G12090.1); similar to proline-rich SAC51 [Brassica napus] (GB:AAC60566.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.746753103610568 -6.1694808858612 7.34863400602524e-05 1 6.98075225649647 19.9837813114963 -0.746753103610568 0.148297880737953
AT4G19880_at 9.62432836034247 9.59701528915875 9.88035110440692 9.80337055510259 10.0013526065709 9.86748139558008 8.30404086199975 7.9543420697462 8.70333522856 8.22653246560058 8.58979814007246 8.542172805509 8.28851813026899 8.41288211338271 8.21355306763886 8.24473941720883 8.52489502557264 8.45386044985346 8.00302663007775 0.167204029055964 0.170646981169094 0.174448697569631 0.17551237179875 0.173433790389313 0.17114101971609 0.166185387855888 0.168863073592120 0.171277392473165 0.178223624227652 0.16557079319692 0.167953080548878 0.175916922631975 0.173715646429413 0.167337242367179 0.171268205039092 0.175572183949326 0.176227866052096 0.177172584805344 4 0|4 /|- 10784722 10785334 10784962.778 10784401 10786449 - gene protein_coding_gene FALSE TRUE AT4G19880.1|AT4G19880.2|AT4G19880.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Glutathione S-transferase, C-terminal-like [Medicago truncatula] (GB:ABC75353.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Glutathione S-transferase, C-terminal-like [Medicago truncatula] (GB:ABC75353.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.558022444522794 6.16866995207854 7.35698820799394e-05 1 6.97985340061134 17.7389188645807 0.558022444522794 0.0663236949696663
AT1G19525_at 5.36047024935086 5.60231951452412 4.55499083166751 4.79438885025993 4.69371967000423 4.75784299760468 5.37891007618926 5.6069435765271 4.47134353595819 4.55494448998576 3.68737436408918 4.83442805630443 4.44041194680342 3.72414834308720 4.40036747834057 4.18343937609886 4.85098708608691 4.54514621882287 5.01596320604792 0.216248990740040 0.214343891501356 0.205351299294482 0.215265650732198 0.208432459081751 0.211930194153795 0.205351299294482 0.209563645862069 0.211797168366561 0.207695313357315 0.215406696380244 0.206043484920604 0.206262027182829 0.216553396494341 0.210381442359614 0.208272172062829 0.208139080016868 0.209920036729976 0.208849685955684 1 1 + 6762046 6762519 6762276 6761511 6762769 + gene protein_coding_gene FALSE TRUE AT1G19525.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G01970.1); similar to pentatricopeptide repeat protein [Physcomitrella patens] (GB:BAF34329.1); similar to Os07g0661900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060542.1); similar to Os02g0611400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047406.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.567193909361763 -6.16707777919026 7.37342024743932e-05 1 6.97808827318473 9.60071735545003 -0.567193909361763 0.0717527203150383
AT1G30610_at 8.00935082421508 7.86096256600516 7.55494320951363 7.10666206291153 7.30683666817605 7.40045068495376 7.69242737932409 7.54982372950362 7.87025664938097 7.93896618325349 6.81859321737515 7.41083745004135 7.02774351219057 7.13469872540113 7.60083642381008 7.06790637299915 6.74967854873245 7.24209584835582 7.85338448244075 0.184448718547174 0.178327987823024 0.176829400222956 0.186928724259589 0.179596843638531 0.176490784135678 0.187274104831386 0.176034405405462 0.183677801282210 0.176038966053170 0.187736369509214 0.178707592750858 0.183692004053591 0.178114366329559 0.192193778965886 0.188076799548318 0.181201679210654 0.182328180198772 0.17685623091881 1 1 + 10849870 10850420 10850168 10846658 10850499 + gene protein_coding_gene FALSE TRUE AT1G30610.1 EMB2279 (EMBRYO DEFECTIVE 2279); binding similar to EMB1408 (EMBRYO DEFECTIVE 1408), binding [Arabidopsis thaliana] (TAIR:AT5G67570.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73375.1); similar to Os01g0674700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043842.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.595952488850884 -6.16609179444292 7.38361578168005e-05 1 6.97699496372617 15.0697244076028 -0.595952488850884 0.0868855829361545
AT3G25600_at 7.37802177952254 7.68417417378427 7.51181167891159 7.70063755522677 7.57800958772515 6.97413642376984 6.02831466860332 6.41499592102157 6.22860272794767 4.93431878425433 6.94006026281341 7.08067587453645 6.43659909544249 7.01945760022886 6.70160226319858 6.20314520873917 5.74115156605535 5.66261591954776 5.63194487858962 0.221922654720734 0.221695507004865 0.224451478983165 0.215957907295593 0.215957907295593 0.226513208004961 0.221044204529006 0.216773244504403 0.231956686897592 0.223107838794932 0.223650322501404 0.215957907295593 0.226172429625481 0.221844556720296 0.234031675028218 0.221879901440431 0.227127356776178 0.225789776135701 0.230007695232425 3 3 + 9308647 9309063 9308837.909 9308491 9309204 + gene protein_coding_gene FALSE TRUE AT3G25600.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G18530.1); similar to Os05g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056407.1); similar to Os01g0604500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043511.1); similar to EF-Hand type [Medicago truncatula] (GB:ABE85120.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.719823426282565 6.16084153736255 7.43816021196827e-05 1 6.97117039106317 13.1944888589460 0.719823426282565 0.138829288773011
AT1G61240_at 5.21719688408141 5.03908963575546 3.77332623494693 3.88963205812692 4.93816437108887 4.46448844839273 4.93164246204008 4.80745471504531 4.41046364564925 4.99661676656531 4.2515636066097 4.6387258910987 4.01364959092418 4.12018750926276 4.71831110866658 3.92781061036515 3.88968887702414 3.79600072979161 4.54527699818754 0.232576900065018 0.229872040573367 0.229562720571654 0.229922291172511 0.229667568787871 0.240658009002228 0.229562720571654 0.234436942331782 0.243599153370287 0.232326271495929 0.233612431688401 0.229562720571654 0.229562720571654 0.229562720571654 0.231310632653592 0.230393227476772 0.238358604436107 0.238043897943246 0.231859316639064 1 1|0 +|/ 22587488 22588614 22588114.625 22585304 22588877 + gene protein_coding_gene FALSE TRUE AT1G61240.1|AT1G61240.2|AT1G61240.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to putative lysine ketoglutarate reductase trans-splicing related 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD62500.1); similar to Os07g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060006.1); similar to Os06g0731900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058667.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.606868354545609 -6.16049899397473 7.44173379846192e-05 1 6.97079021225973 9.04276337315233 -0.606868354545609 0.0923925078633217
AT1G32920_at 6.03141873258542 6.61768856499622 6.98141911899666 7.59013944987132 6.33550931301128 5.09518323530684 4.05844830951259 4.21442891476622 5.30532164583148 4.85035991519681 6.29266393669713 6.73960621204032 4.62118699873116 6.00587027199534 6.70257042051391 6.10919499240923 5.47109412030624 5.96078688919822 5.04795826568904 0.248292101026509 0.245763876742870 0.255257332349828 0.250119328747407 0.248235380582676 0.271334033604633 0.258661719590624 0.251751477215494 0.263480258946488 0.255087387092635 0.247877841500529 0.245763876742870 0.262608577531127 0.254815710644705 0.253549984557443 0.252004077990209 0.251566105928143 0.259192516707592 0.253652402524681 1 1 + 11928907 11929092 11928994.364 11928787 11929282 + gene protein_coding_gene FALSE TRUE AT1G32920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32928.1) 1.09502921841437 6.15673132188581 7.48116139313313e-05 1 6.96660724797549 11.3934052911186 1.09502921841437 0.26113435482404
AT2G30790_at 6.14801222164663 5.84113441556044 5.58708000233535 5.38229081721889 6.98158873471238 6.67847348439288 7.11597507257949 7.04016728248488 7.9220577318658 8.08229389708562 7.54967852946903 7.4288420547911 6.43734261999012 7.49500528112512 7.2920098296928 6.9892751953231 6.96358939364577 7.23019791868885 7.90960680860593 0.189882630835159 0.203049862188516 0.194698660737533 0.212194827054079 0.194111873171380 0.198881854219841 0.193755949157275 0.196989941252025 0.200774875910545 0.188348605797189 0.189843123464714 0.192001403767555 0.197257779866876 0.194356616612546 0.194364536977813 0.185951291046002 0.197756315077115 0.189384484117614 0.191328397731518 2 2|0 -|/ 13126133 13126965 13126553 13126124 13127167 - gene protein_coding_gene FALSE TRUE AT2G30790.1 PSBP-2 (photosystem II subunit P-2); calcium ion binding Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. similar to PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G06680.1); similar to Oxygen-evolving enhancer protein 2-2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (GB:O49344); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.588520432374015 -6.15607535874618 7.48804864857655e-05 1 6.96587873080146 13.9191212948796 -0.588520432374015 0.0836658494146649
AT3G53700_at 6.6162949024845 7.2391692474631 6.0065468848843 6.28937367482179 6.64374825169194 6.28702729887878 7.58903336300221 7.44041780429449 5.97500322411363 7.14803055622326 6.32100646454912 6.38021263909705 6.27956286260225 6.0537560847082 6.45168240459632 6.45141884063244 6.03671951263851 5.0352700422038 6.77795923255768 0.225748788939023 0.225272206523435 0.231726447439464 0.224246517273019 0.225182217374457 0.232745134026971 0.224089568265075 0.222745334418549 0.247096332996928 0.229261574473411 0.229563166833830 0.224663968984194 0.226573619248521 0.228645887177231 0.224605947449327 0.224171025733559 0.225748867204364 0.238488983982025 0.222745334418549 3 3 + 19912961 19913515 19913284.273 19911258 19913862 + gene protein_coding_gene FALSE TRUE AT3G53700.1 MEE40 (maternal effect embryo arrest 40); binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97191.1); similar to Os03g0597200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050605.1); similar to putative membrane-associated salt-inducible protein [Oryza sativa] (GB:AAG59660.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.711007766497466 -6.1508934207477 7.54269499604022e-05 1 6.96012102352267 13.1438854004451 -0.711007766497466 0.135966337457101
AT1G69790_at 2.97289763194222 3.37929671878282 5.07431792758403 5.00470523016532 3.76541238374097 4.28024479600872 4.17372802592097 4.52723610664973 2.5942125209309 2.74330951057192 2.86894447124658 2.34001676161684 3.36070023260819 3.17185187752200 2.87655518775646 3.24917890296802 3.70632231246934 2.91485940028103 1.98764435261811 0.221743609025405 0.220389004834535 0.227205308731681 0.229782691554017 0.22245231069321 0.236714400582407 0.22308302057259 0.239415155096203 0.23335887032544 0.223179121812110 0.216342739471603 0.222375308035058 0.222956801910475 0.216342739471603 0.228621205684308 0.220368533846989 0.235907852573507 0.218143154310486 0.222057438945507 1 1 + 26271454 26272382 26272174.727 26270272 26272646 + gene protein_coding_gene FALSE TRUE AT1G69790.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G26970.1); similar to Protein kinase [Medicago truncatula] (GB:ABD32991.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.693605989409537 6.14714019066829 7.58254094234852e-05 1 6.95594787342271 6.89861773827378 0.693605989409537 0.129505318773704
AT3G54620_at 6.95917523535625 7.08979204349876 7.44237816280991 7.20522027314968 7.9507129466567 7.30579290683577 6.36441152281246 6.3567719403778 6.58423740141849 5.38042551947739 6.71190791063454 6.10710307621674 6.47771097541059 6.30266120169792 6.29995182318795 6.64303762749647 6.87508565192989 6.62346336290746 5.86884249850343 0.183580530871541 0.17540584155641 0.179079041307928 0.189023481782269 0.177867890167548 0.193805422462635 0.188465288402941 0.174748334013044 0.184218344019074 0.183363574127759 0.181463071824725 0.174883470252954 0.174748334013044 0.204666927400076 0.182599600812965 0.174748334013044 0.182998124877624 0.179195081840368 0.177889255639798 3 3|0 -|/ 20229728 20231099 20230580.556 20228875 20231388 - gene protein_coding_gene FALSE TRUE AT3G54620.1 BZO2H4 (basic leucine zipper O2 homolog 4); transcription factor bZIP transcription factor-like protein mRNA similar to BZO2H1 (basic leucine zipper O2 homolog 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G02640.2); similar to bZIP transcription factor bZIP89 [Glycine max] (GB:ABI34655.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.672050892035229 6.147086126275 7.58311655488357e-05 1 6.9558877424028 13.3090903840130 0.672050892035229 0.121049830649108
AT1G07000_at 7.6511709058052 7.9149220136209 8.02242443946328 7.93218667047515 7.1724512957516 7.01265687810998 4.42062139824175 3.97967523304694 6.40090678139734 4.1951250575605 4.88803528874319 5.14340634974100 4.57330635167466 5.25003451419809 3.84007238700909 5.073205916778 4.20304916136605 5.08214932280499 4.64485381746594 0.220347270016697 0.217684191105267 0.215979613701543 0.215979613701543 0.219246775151832 0.221034215634496 0.220028624834764 0.227804542330480 0.227881966239561 0.215979613701543 0.218952100830838 0.219167009282136 0.220083619642800 0.228154205907646 0.223567972061137 0.215979613701543 0.22697461263324 0.230591108554371 0.215979613701543 1 1 - 2150448 2150964 2150710.545 2150193 2152324 - gene protein_coding_gene FALSE TRUE AT1G07000.1 ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70B1 (exocyst subunit EXO70 family protein B1), protein binding [Arabidopsis thaliana] (TAIR:AT5G58430.1); similar to unnamed protein product [Solanum lycopersicum] (GB:CAA78112.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.60984731300138 6.14684276653702 7.58570813453738e-05 1 6.95561706874166 11.681739919488 0.60984731300138 0.0944179772570647
AT4G15770_at 7.97765317269925 8.5527126640305 7.96208280220845 7.92909941841418 7.64362272499952 7.45127808381944 8.51411687385483 9.0827518785029 7.00224703364161 7.47127541143492 6.21816495063238 7.01559390295776 6.64989843264175 6.56926186356455 6.71194316791675 7.00908792713381 6.94963471388266 6.28564782489035 7.59152317084938 0.208047486903186 0.215328440586588 0.209232587265126 0.215516364352841 0.220139267392361 0.211439332129065 0.211188521357261 0.216255414073332 0.228197011671740 0.209819606679574 0.213290032677627 0.208892502118053 0.214321375537600 0.211244713876919 0.226309515224278 0.208047486903186 0.217882352993995 0.218500675986708 0.21251314055735 4 4 + 8978397 8978565 8978481 8978009 8978877 + gene protein_coding_gene FALSE TRUE AT4G15770.1 60S ribosome subunit biogenesis protein, putative similar to PREDICTED: similar to MGC83122 protein [Gallus gallus] (GB:XP_414222.1); contains InterPro domain PUA; (InterPro:IPR002478) -0.732074498633803 -6.14651360294221 7.58921496040888e-05 1 6.955250944593 15.1547493539467 -0.732074498633803 0.143971033366801
AT1G05630_at 3.25537544919333 3.85497027549895 3.03648854603122 2.64114037956058 2.48370392807056 2.17344042203582 3.10435494953997 3.32704925217264 5.39604452428455 3.09297978915245 3.61149046769151 3.93294421292656 3.22501946435997 3.42253384338874 3.36844801555864 3.13371475456642 3.19466275681184 3.40173504663413 3.67984850240186 0.229822842435272 0.232443940693202 0.228393147105545 0.237344666249641 0.222552264948128 0.23636803730176 0.224480025160498 0.225413479753598 0.238199281364057 0.22457548519233 0.22393020940533 0.229553813065445 0.224835943898053 0.221995130626143 0.228419621319859 0.224164453683668 0.233812228788876 0.222406279002845 0.225566903738841 1 1 + 1686558 1687071 1686797.818 1682317 1687362 + gene protein_coding_gene FALSE TRUE AT1G05630.1|AT1G05630.2 5PTASE13/AT5PTASE13; inositol or phosphatidylinositol phosphatase Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G43900.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G31830.1); similar to FRA3 (FRAGILE FIBER3), inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G65580.1); similar to Os09g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063577.1); similar to Inositol polyphosphate related phosphatase; PapD-like; WD40-like [Medicago truncatula] (GB:ABE79233.1); similar to Os08g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062285.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135)|similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G43900.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G31830.1); similar to FRA3 (FRAGILE FIBER3), inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G65580.1); similar to Os09g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063577.1); similar to Inositol polyphosphate related phosphatase; PapD-like; WD40-like [Medicago truncatula] (GB:ABE79233.1); similar to Os08g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062285.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.723358265523703 -6.14639750638288 7.5904522371596e-05 1 6.95512180751817 6.71837015469047 -0.723358265523703 0.140768063586668
AT1G31650_at 6.01248986927786 5.74538833991251 5.08727401082519 5.06556502212721 5.44518228338725 5.48961217261982 6.38411859928654 6.58499026381058 5.75681726932455 6.33558477428269 5.8331985469563 6.31285014085911 6.33500294073691 6.14392245301018 5.67040559222465 6.12789248612659 6.3566480056628 5.77221751022343 6.64575020311713 0.246284889299777 0.239718559147262 0.253554399283867 0.238407601827374 0.234809307962053 0.247818556102835 0.249255299607155 0.245615622304574 0.248380814235353 0.25799339390096 0.24854954943125 0.237471501986305 0.251893832332653 0.264311339608598 0.251463059289918 0.240108790794646 0.248104528518082 0.240556481219511 0.243851905137421 1 1 - 11326606 11327026 11326850.778 11326282 11330719 - gene protein_coding_gene FALSE TRUE AT1G31650.1 ATROPGEF14/ROPGEF14 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF7/ROPGEF7 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT5G02010.1); similar to Os05g0454200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055718.1); similar to Os02g0702600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047852.1); similar to pollen-specific kinase partner protein [Lycopersicon esculentum] (GB:AAW57535.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.543435967632566 -6.1442846211144 7.61300761146463e-05 1 6.9527711861144 11.8843615493474 -0.543435967632566 0.0584653209225817
AT2G45210_at 3.58185173716123 4.53006647360465 4.62086368845589 4.76674896238699 3.83704045531947 4.07805276746591 1.67284584419559 1.80199259635937 1.76069614828455 1.78657487766478 1.76714300874272 2.03728777255012 1.91583865316156 2.16221861866175 1.95345487126035 1.84251668551066 1.99367478929331 2.50358722956878 1.92690037675169 0.268905391279967 0.275040179813740 0.257479092566116 0.26915316354299 0.260289333959943 0.262737594823706 0.251503138623308 0.24794225369339 0.24948851637161 0.253925046583711 0.256885474467381 0.254149586271697 0.255422348450684 0.24794225369339 0.252830213780426 0.250250187194767 0.259768392238221 0.254023165393405 0.254339936170972 2 2 + 18649001 18649406 18649222.364 18648640 18649778 + gene protein_coding_gene FALSE TRUE AT2G45210.1 auxin-responsive protein-related similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G60690.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); similar to Os04g0537100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053425.1); similar to OSJNBa0091D06.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03018.3); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.813114354135087 6.14271937344747 7.62976305655084e-05 1 6.95102932360316 5.53452731786563 0.813114354135087 0.172635321727298
AT2G22360_at 6.82972079645076 6.76366193435409 6.93073615238127 6.98148344897296 6.60144996750397 6.15249064564555 8.53611768630426 8.50723420349038 6.7503341914089 7.00557311587016 6.35059716224028 6.45005010425915 6.61736955265978 6.21069333872161 6.47861660517244 6.82243122673348 6.86938488734573 6.15284427920676 6.21602813710825 0.221283204255227 0.222842588806019 0.222510563017258 0.22458053702814 0.223329563982739 0.233874650400066 0.22309042776847 0.220476427064895 0.225365294732967 0.227547724388959 0.225468615129663 0.225244672299045 0.223513065599631 0.225391214148494 0.224237951523743 0.219532415671437 0.240298802711907 0.230781563602392 0.220997143101504 2 2 + 9506960 9507352 9507116.909 9504675 9507695 + gene protein_coding_gene FALSE TRUE AT2G22360.1 DNAJ heat shock family protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G39960.1); similar to Os05g0333500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055227.1); similar to DNAJ homologue [Oryza sativa] (GB:BAB70509.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.577978510888648 -6.1366625663842 7.69497139315974e-05 1 6.94428510647244 13.738516959057 -0.577978510888648 0.0791784735846833
AT3G12580_at 3.21133415894374 3.56652060686071 2.89221235142088 3.16043877523431 3.29286127066458 3.48475985726406 3.70461052309789 4.32753571920525 3.52042798363436 4.13375373692318 2.77979897995871 2.32190389797607 3.18183247306031 2.77764243858358 2.72627112025134 3.3934836648324 3.85151929061993 3.06793976286117 4.16168284792127 0.200700000725289 0.200738005318427 0.203205820992333 0.204971800871347 0.202368679186942 0.204084292600578 0.205871582631373 0.205686940833294 0.208870914690325 0.203575344703371 0.200615102529067 0.204368287373592 0.206442110713817 0.211857120346052 0.201167139577402 0.201418478985488 0.201159331560694 0.200615102529067 0.201245928078518 3 3 - 3991506 3992033 3991751.636 3991268 3993798 - gene protein_coding_gene FALSE TRUE AT3G12580.1 HSP70 (heat shock protein 70); ATP binding similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G02490.1); similar to HSC70-1 (heat shock cognate 70 kDa protein 1), ATP binding [Arabidopsis thaliana] (TAIR:AT5G02500.1); similar to heat shock protein 70-3 [Nicotiana tabacum] (GB:AAR17080.1); similar to high molecular weight heat shock protein [Malus x domestica] (GB:AAF34134.1); similar to 70 kDa heat shock cognate protein 1 [Vigna radiata] (GB:AAS57912.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.710502378844635 -6.13222998628699 7.74307043859064e-05 1 6.93934543629496 6.93061939600853 -0.710502378844635 0.136588670156903
AT1G62180_at 10.2316561698862 10.6780788284657 10.8240792143041 11.0226436545738 10.5223148807686 10.3303984466326 12.3328770326411 12.3841175462664 11.1519893552678 11.8292672923569 11.2087508737192 10.4694615474972 11.1915004908154 11.0607707094017 10.1817665852150 10.9601615753412 11.4342276078955 10.9318358017657 11.2220319190897 0.0869527319998058 0.0854290185088582 0.0864509577913577 0.0886657652998841 0.086427813474158 0.0895763679382901 0.0911100583061577 0.0892284835244818 0.0928798122899996 0.0888142235744069 0.0860416936257575 0.0889995617695817 0.086570526262652 0.0925087467531947 0.0891491756419277 0.0877768898896424 0.0894774078476202 0.0884176734872906 0.0891697230148206 1 1 - 22979476 22979990 22979730.636 22979195 22981267 - gene protein_coding_gene FALSE TRUE AT1G62180.1 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. Identical to 5'-adenylylsulfate reductase 2, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 2) (APS sulfotransferase 2) (Thioredoxin-independent APS reductase 2) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 43) (PAPS reductase homolog 43) (Prh-43) (APR2) [Arabidopsis Thaliana] (GB:P92981;GB:O04215;GB:O04583;GB:O22554;GB:Q38947); similar to APR3 (APS REDUCTASE 3) [Arabidopsis thaliana] (TAIR:AT4G21990.1); similar to APR1 (PAPS REDUCTASE HOMOLOG 19) [Arabidopsis thaliana] (TAIR:AT4G04610.1); similar to APS reductase [Brassica juncea] (GB:CAA04610.1); similar to adenosine 5' phosphosulfate reductase [Populus alba x Populus tremula] (GB:AAQ57202.1); similar to adenosine 5'-phosphosulfate reductase [Glycine max] (GB:AAL66290.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-independent 5' (InterPro:IPR004508) -0.601555067596738 -6.1304716800092 7.76223918236907e-05 1 6.93738503717956 22.2062235156229 -0.601555067596738 0.0912735864500975
AT1G53560_at 8.65840093162962 9.0190730102133 10.0868093102454 9.9541220443626 10.2576726970016 9.92816044988539 9.93400487822137 9.85139805959046 9.65748812352498 9.58445845430583 10.2301618215327 9.64452289202164 10.0600152237905 10.2515276444210 9.67985384166225 10.2460434210814 9.893889650712 10.1944269632626 9.33117090889907 0.113319192728093 0.110465802161511 0.110302803970915 0.111437262641582 0.107130270199556 0.109851710523361 0.111580777257708 0.110373773129820 0.117212727070425 0.107740141515789 0.107367211144353 0.109432163548861 0.111151207911733 0.107286571519347 0.108556160760504 0.105795350325199 0.127911147492348 0.105795350325199 0.107736093656098 1 1|0 -|/ 19988721 19989569 19989223.556 19988420 19989651 - gene protein_coding_gene FALSE TRUE AT1G53560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os05g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056334.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.595827296096979 6.12515615938206 7.8204970758118e-05 1 6.93145531834671 19.4859190115873 0.595827296096979 0.0887641327103394
AT2G33150_at 11.4121278691914 11.4506642339925 12.2039391482110 12.1622945034570 12.1110579627379 11.6073822219433 11.2070324865565 10.8341593184218 10.1835090277905 10.5692343854451 10.6840983630581 10.4005198819274 11.2796970935961 10.8426323904112 10.5570287294493 11.0236429161200 11.194435967309 10.6357622603204 10.2744523734396 0.095591937043994 0.0940389653858969 0.0980992815488476 0.097535978897051 0.101499970573118 0.102460468547857 0.0988523040659336 0.0959613604951116 0.104267008440551 0.100952628087835 0.096730601438129 0.099641242697362 0.0972830437845577 0.0970951057295218 0.101320391693128 0.0934729889982607 0.108052666329939 0.110023915807675 0.102322888916606 2 2 - 14054902 14056145 14055610.364 14054555 14058217 - gene protein_coding_gene FALSE TRUE AT2G33150.1 PED1 (PEROXISOME DEFECTIVE 1); acetyl-CoA C-acyltransferase Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. Identical to 3-ketoacyl-CoA thiolase 2, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 2) (Acetyl-CoA acyltransferase 2) (Peroxisomal 3-oxoacyl- CoA thiolase 2) (Peroxisome defective protein 1) (PED1) [Arabidopsis Thaliana] (GB:Q56WD9;GB:Q93Z35;GB:Q9S7M3); similar to KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT5G48880.3); similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative [Arabidopsis thaliana] (TAIR:AT1G04710.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase; (InterPro:IPR002155) 0.640000543381131 6.123053159634 7.8436747150712e-05 1 6.92910797090398 22.2083951159801 0.640000543381131 0.108892916880261
AT3G51860_at 9.1265091352205 9.54649127435657 11.1366018112866 11.3034061709258 11.1046757783056 10.2572317421038 10.8111502831442 10.7268538874911 8.49260960204626 8.42762525821665 3.69626723687866 2.93836138442524 7.38874384074062 4.88504999455971 3.06824786919099 4.42621543522104 7.986359744516 3.81107743339056 4.85912904721866 0.222664354723604 0.219876226518767 0.222837799718663 0.222998658982568 0.220624280606919 0.217305870441664 0.222531493059972 0.220781169905423 0.236158061179704 0.219586182204791 0.238210814163538 0.235685299008314 0.222794871221968 0.231622863643540 0.236127658698426 0.230203489083827 0.222183320437481 0.229705433906583 0.234643843073318 3 3|0 +|/ 19252513 19253393 19252996.875 19250404 19253856 + gene protein_coding_gene FALSE TRUE AT3G51860.1 CAX3 (cation exchanger 3); cation:cation antiporter Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION EXCHANGER 1), calcium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT2G38170.1); similar to cax51 [Capsella bursa-pastoris] (GB:AAT70233.1); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium/proton exchanger superfamily; (InterPro:IPR004798) -0.793509935596398 -6.12227884784778 7.85222706183581e-05 1 6.92824349892418 16.5190291786172 -0.793509935596398 0.166840848851152
AT4G01290_at 6.94633623011289 7.24110521787227 7.567713902441 7.58195501448658 8.19742895323525 8.06967060288567 7.21272447402515 7.47721749200856 6.33733568587729 6.49600002212598 6.74816962552537 6.7747133046763 7.25462703829006 6.93901476906145 6.57136767322436 6.94182571985239 6.90439844777953 6.84159450661256 6.30684871443698 0.196913493162020 0.192015573327019 0.189407037513986 0.194716373706112 0.201262682849247 0.194157213198782 0.191123801992543 0.191669805461994 0.198670188642265 0.201470470475611 0.189448323105106 0.187759360400308 0.187759360400308 0.195427050857015 0.189946998015452 0.192496760015608 0.191423425157067 0.190531930103194 0.200837863046338 4 4 - 538218 542300 540299.947 538090 543869 - gene protein_coding_gene FALSE TRUE AT4G01290.1|AT4G01290.2 similar to unknown [Oryza sativa] (GB:AAF00138.1); similar to Os06g0105900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056560.1) 0.563374338119204 6.11974897166398 7.88023931998295e-05 1 6.92541832246162 14.1627816657707 0.563374338119204 0.072056088138507
AT4G02350_at 6.51416122961237 7.23549822940172 6.25820422969664 6.52714971933489 6.61956643971753 6.58170620683131 5.61669627969672 5.4381224548334 6.52425560841412 5.61594075188946 7.57093138643066 7.80928455544488 7.15299715192336 7.32234853878568 7.05906418087685 6.88859363734866 6.69746799372374 6.08047829710453 5.70487993755042 0.238152536427921 0.221929622575456 0.232701802144615 0.224774835486244 0.226067126088149 0.220925088818026 0.221496912161311 0.219845079130843 0.234739104746502 0.231872627626164 0.220304768685249 0.221190885390396 0.218536490839851 0.219093845400513 0.230259431862637 0.221213356821858 0.231413394697086 0.223752940191637 0.234501298524264 4 4 + 1039993 1040428 1040208.091 1038114 1040774 + gene protein_coding_gene FALSE TRUE AT4G02350.1 exocyst complex subunit Sec15-like family protein similar to exocyst complex subunit Sec15-like family protein [Arabidopsis thaliana] (TAIR:AT3G56640.1); similar to PREDICTED: similar to Exocyst complex component Sec15A isoform 3 [Canis familiaris] (GB:XP_866644.1); similar to Os03g0163500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049059.1); similar to Os01g0351300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042985.1); contains InterPro domain Exocyst complex subunit Sec15-like; (InterPro:IPR007225) 0.709912026131251 6.11956878064505 7.88223856933472e-05 1 6.92521705633077 12.8593903404686 0.709912026131251 0.136919024939976
AT1G06190_at 8.01940711806599 8.00641980557798 7.12306458661372 7.28583614647545 7.49899245372568 7.49737660777957 8.20199966755363 8.2518671878586 7.90249730578341 7.80450738633961 7.51681894954639 8.04701318126718 7.27683562407489 7.50932541880149 8.26962322108792 7.49068558185639 7.49331202210218 7.42319905335426 7.91590677182527 0.144033000301489 0.143391357796707 0.149937908427201 0.142401396282376 0.139945760587358 0.146784681964871 0.142638609215349 0.140438302030600 0.147172005093370 0.138795061579462 0.142245728888106 0.139904314767384 0.139287357249477 0.143067537128636 0.150040860696068 0.140546857309209 0.142482398572536 0.140878785824386 0.140317723638509 1 1 - 1892466 1893020 1892832.909 1892272 1894147 - gene protein_coding_gene FALSE TRUE AT1G06190.1|AT1G06190.2 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism similar to ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT2G31150.1); similar to Os03g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049178.1); similar to Putative plasma membrane proton ATPase [Oryza sativa] (GB:AAK92634.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) -0.507279092960104 -6.11266594701701 7.95923622130227e-05 1 6.91750263393282 15.4869481731200 -0.507279092960104 0.0295475985407256
AT4G35300_at 7.47915731765748 7.56735522448676 7.3108688899867 7.19900395326075 8.01849437051388 7.78754182209226 8.01399740056764 7.58582142819086 5.98864054523022 6.71546941378623 7.41443024025148 7.55188614323384 7.66770440705723 7.69893018763225 7.68788870912358 7.69049475520296 8.06636974468557 7.54002295681848 6.48735704752093 0.188852274143898 0.189997802611917 0.188356561625243 0.186476559399176 0.189495466157429 0.187572692241454 0.186789991447592 0.191932575982262 0.210620293181474 0.188371966824324 0.181115770843729 0.181115770843729 0.186907344219896 0.192623844465065 0.204369539210041 0.191738777397991 0.184241353790479 0.205222620991608 0.189162515739735 4 4|0 -|/ 16796487 16797101 16796882.6 16796261 16799558 - gene protein_coding_gene FALSE TRUE AT4G35300.1|AT4G35300.2 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transporter/ nucleoside transporter/ sugar porter|TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transporter/ sugar porter Identical to Monosaccharide-sensing protein 2 (Sugar transporter MSSP2) (MSSP2) [Arabidopsis Thaliana] (GB:Q8LPQ8;GB:O65497); similar to TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G51490.1); similar to TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G20840.1); similar to hexose transporter 6 [Vitis vinifera] (GB:AAX47312.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE78431.1); similar to putative hexose transporter [Vitis vinifera] (GB:AAY40466.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.592477320196295 6.11254024969723 7.96064574094605e-05 1 6.91736208143635 14.6512158317678 0.592477320196295 0.0877246126689684
AT1G69440_at 5.94973213936911 6.41048769870805 6.19867203743976 6.37911988404563 4.71399892862583 5.23085406903284 5.9326102862863 6.49025817237268 5.11800850556107 4.94119805205515 3.65093169004146 3.79227151098841 3.97789615552064 4.0760067319983 2.93606543952656 4.15984387702415 4.13461871482496 4.71925631126723 4.62042390119227 0.26725565393186 0.263559173140027 0.263994963173817 0.274399900076303 0.263799967395326 0.277268337325273 0.276832868853035 0.267281250560005 0.281135397411945 0.278039252932155 0.263756339712772 0.265070535500948 0.271996023968035 0.276444345310993 0.273608583086554 0.265255667325452 0.279215390547052 0.265504841007009 0.274210506937368 1 1 - 26105275 26105672 26105479.182 26104722 26108829 - gene protein_coding_gene FALSE TRUE AT1G69440.1 AGO7 (ARGONAUTE7) Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds. similar to AGO1 (ARGONAUTE 1) [Arabidopsis thaliana] (TAIR:AT1G48410.1); similar to Os03g0449200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050473.1); similar to putative argonaute protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37538.1); similar to OSJNBa0005N02.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE02070.2); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) -0.763729846717608 -6.10959525794076 7.99374615180034e-05 1 6.91406826069113 10.3252523804026 -0.763729846717608 0.156990962999800
AT1G15110_at 3.46752121826178 3.50681473193066 3.96493843833903 4.18851431845301 4.26705002056635 4.2888128625833 3.54025682278008 3.76475518243567 3.21771953917970 3.9488850203294 4.12897315792784 3.99754447943586 4.42221334130926 4.23044597023533 3.94790088848245 4.3848000857577 4.19543333939839 4.06261253802674 3.95612134404319 0.188917656239919 0.190165767269746 0.187905603162426 0.196595142702298 0.192725485362540 0.186852608512993 0.189729219854274 0.189421527529693 0.199298996523634 0.190167136808534 0.189932727261506 0.187480904707223 0.193408036786963 0.191138181125609 0.198854820264228 0.186911071199972 0.189690563104069 0.191064494885698 0.186717725010867 1 1 + 5201138 5201844 5201421.909 5199013 5202170 + gene protein_coding_gene FALSE TRUE AT1G15110.1|AT1G15110.2 phosphatidyl serine synthase family protein similar to Os01g0118300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041859.1); similar to phosphatidylserine synthase [Dictyostelium discoideum AX4] (GB:XP_001134578.1); similar to Os05g0554400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056269.1); contains InterPro domain Phosphatidyl serine synthase; (InterPro:IPR004277) 0.535578547510487 6.10607549104006 8.03349981463785e-05 1 6.9101296116456 7.81299083754663 0.535578547510487 0.0553783817959024
AT4G08685_at 7.07628742348055 7.53194792528714 5.41191007513172 5.84953419598234 5.98801626498277 6.31173563747161 8.01830483385744 8.53455401149792 8.05045879240791 8.4174151448933 8.88785529038162 9.37643049042388 8.71976739355199 8.82729059778759 9.2821861820909 8.57012401796313 7.44083711910912 8.99879361883494 8.61479547752432 0.183818783699130 0.173361104283685 0.222041538899709 0.190991435438736 0.198031441909634 0.189082960523049 0.185456648513052 0.173361104283685 0.187423074229206 0.178105508747618 0.175957202849134 0.174223605645912 0.178075457982398 0.182783302240787 0.178450630220002 0.176007424851796 0.189508592462267 0.174300888172046 0.174454135384136 4 4|0 +|/ 5550566 5551197 5550873.9 5550426 5551367 + gene protein_coding_gene FALSE TRUE AT4G08685.1 SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:ABC86745.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.748976860656298 -6.105596965955 8.0389207603412e-05 1 6.90959397215953 15.4021864928163 -0.748976860656298 0.151899100542801
AT3G47860_at 10.1325789863008 10.1369773226617 9.3153058689665 9.23291702627456 9.92816927097217 9.65593640347662 8.71441983473161 8.57744623857743 8.10757513395468 8.77633470970652 9.85233086426258 9.78745184614368 8.7851591438313 9.3843766368439 9.56937658276114 7.75153576018623 8.7753513488543 9.63642682147863 7.91582373629394 0.11693752089539 0.115443303971403 0.121137811181956 0.111511647139676 0.116204976421258 0.119998911532103 0.113623119214677 0.11877547431678 0.139224341225744 0.114051124388432 0.118394483080446 0.116150732851935 0.117428316392665 0.115543078895953 0.116317220571547 0.123149584625836 0.125378946364387 0.121058248862485 0.120904161007464 3 3 - 17667766 17668339 17668029.636 17667655 17669301 - gene protein_coding_gene FALSE TRUE AT3G47860.1 apolipoprotein D-related similar to chloroplast lipocalin [Glycine max] (GB:ABB02412.1); contains InterPro domain Lipocalin-related protein and Bos/Can/Equ allergen; (InterPro:IPR000566); contains InterPro domain Lipocalin; (InterPro:IPR002345); contains InterPro domain Calycin-like; (InterPro:IPR011038); contains InterPro domain Calycin; (InterPro:IPR012674) 0.53444990620737 6.10511625689501 8.04437038266616e-05 1 6.90905584805326 18.1913833617603 0.53444990620737 0.0546369962022521
AT3G28690_at 7.81131041903292 8.29401385788136 8.33899461222775 8.33656172065784 8.90870184409397 8.56335861590733 7.82648441377848 7.95362168273938 6.56061693541465 6.93549271875601 7.12922008728247 7.1215220513778 7.50507319593332 7.44816481536805 7.06795432234556 7.72010352018875 7.6881580331438 7.44600105119102 6.59861107247511 0.166043542071436 0.161224080811429 0.165317472224860 0.179654223257066 0.165371080010408 0.175503172180906 0.169016905084146 0.161224080811429 0.173312945922813 0.168576938701506 0.162087604052695 0.170449837104015 0.161224080811429 0.165534391398719 0.166680341293486 0.161626042433902 0.173550673520293 0.164855702854813 0.169967341048174 3 3 + 10758085 10758670 10758399.364 10756276 10759105 + gene protein_coding_gene FALSE TRUE AT3G28690.1|AT3G28690.2 protein kinase, putative|kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G15080.1); similar to serine/threonine protein kinase-like [Solanum tuberosum] (GB:AAU89742.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.629040498626139 6.10338365604957 8.06404501971213e-05 1 6.90711597591652 15.2986383341994 0.629040498626139 0.105042093886104
AT4G18930_at 9.54368285692048 9.49722996519696 9.7540884113031 9.66683332311523 9.72816877274758 9.3582062769454 8.31630946813284 8.24042026844852 7.93125072886909 8.37667894560365 8.597014367007 8.39888741057226 8.51664423530423 8.70747252978043 8.06814898589332 8.38500603753638 8.76815050462237 8.55461802796407 8.04956596781038 0.204459747916138 0.207198209635817 0.213398023536092 0.218253252826604 0.204064613489341 0.210399662383327 0.197883808209485 0.209517869185558 0.234035768982573 0.212825302528918 0.211198093278157 0.218207785957155 0.207468249807835 0.223358205378841 0.227222441973586 0.205356442322462 0.219149140087358 0.227209709186657 0.209154633803474 4 4 + 10370895 10371869 10371412.273 10370715 10372056 + gene protein_coding_gene FALSE TRUE AT4G18930.1 cyclic phosphodiesterase Identical to Cyclic phosphodiesterase (EC 3.1.4.-) (CPDase) [Arabidopsis Thaliana] (GB:O04147); similar to cyclic phosphodiesterase, putative [Arabidopsis thaliana] (TAIR:AT4G18940.1); similar to Appr>p cyclic nucleotide phosphodiesterase [Medicago truncatula] (GB:ABE80637.1); contains InterPro domain Appr>p cyclic nucleotide phosphodiesterase; (InterPro:IPR009097); contains InterPro domain 2 , 3 cyclic phosphodiesterase, plant; (InterPro:IPR012386) 0.55387055229688 6.10016396251772 8.10074309209048e-05 1 6.90350972729047 17.5724464060659 0.55387055229688 0.0675584530022543
AT3G52800_at 9.5022729277232 9.69303846386679 10.3504282643419 10.3734300117363 10.1852310299574 10.0408728316293 9.67016929439405 9.8176560400493 9.10003005079323 9.17050192635716 9.78616662344256 9.38894176430398 9.86690449785229 9.6543188950777 9.19533305877284 9.84258540714868 9.80788685548259 9.52796619966375 9.1736872257141 0.0957065085532723 0.0911918124906776 0.0945732554010186 0.0918166766326706 0.0935220121652685 0.0928595313308404 0.0916082097387248 0.0904034714664732 0.103799032019780 0.0949409520176626 0.0904034714664732 0.093321376843757 0.0909189177231887 0.0960619525053393 0.095417245163483 0.0904034714664732 0.092211340924952 0.0983856678260963 0.0920350902476086 3 3 + 19580790 19581189 19580978.727 19580289 19581660 + gene protein_coding_gene FALSE TRUE AT3G52800.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AtSAP6) (SAP6) [Arabidopsis Thaliana] (GB:Q94B40;GB:Q9LXI5); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G36320.1); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.526198099002206 6.09986685714365 8.10413848119209e-05 1 6.90317686094548 19.3450553481320 0.526198099002206 0.048797794330821
AT4G33050_at 9.92113659885364 10.1389568623512 11.0979839243640 11.0734837706532 10.4091649339650 10.0163863705195 8.29469570211397 7.92789046981275 9.30122292259182 8.06586922954207 8.13358213789494 8.65317096065534 7.24027493270467 8.2889302390974 7.52793299707871 8.21093376045309 7.9588127971143 8.56720690008001 7.87720438967903 0.161804983881990 0.159700052614554 0.159557594208680 0.160487196188483 0.159447588134307 0.156085934312950 0.152070337120374 0.154960059368808 0.164502371465459 0.152162840671002 0.149055670348764 0.157969695631753 0.176786410813344 0.158301637737339 0.156073120390298 0.14969188952518 0.172444402847554 0.151916074164771 0.161154905879621 4 4|0 -|/ 15944649 15945315 15944947 15944325 15947029 - gene protein_coding_gene FALSE TRUE AT4G33050.1|AT4G33050.2|AT4G33050.3 EDA39 (embryo sac development arrest 39); calmodulin binding similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT2G26190.1); similar to IQ calmodulin-binding re (GB:ABE79293.1); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to Os05g0197300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054871.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048)|similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT2G26190.1); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to IQ calmodulin-binding re (GB:ABD28516.1); similar to Os05g0197300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054871.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.618212459144845 6.0989218169646 8.11494873402472e-05 1 6.90211796955526 18.1036478813654 0.618212459144845 0.100441350725819
AT1G15800_at 4.32109449794925 4.54463770563749 5.00091212729579 4.83473056309826 5.19177034592132 5.82021177533463 3.75012294103084 3.55620493269448 3.9089781582337 3.54321202414615 4.04451619384795 4.03847742119358 3.81782289227379 3.70309306032065 4.17025846425092 3.62079267074509 4.00399669620665 3.90113565790249 3.76026031199909 0.336513640769727 0.329632677284160 0.346558427685833 0.325821168937737 0.340135420091185 0.347634161640086 0.317476242902857 0.325439875032379 0.314827427198351 0.314827427198351 0.314827427198351 0.314827427198351 0.314827427198351 0.314827427198351 0.318609197257410 0.319435968927933 0.316735554617552 0.31921720890324 0.314827427198351 1 1 - 5441425 5443369 5442171.5 5441077 5443679 - gene protein_coding_gene FALSE TRUE AT1G15800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80610.1); similar to Os02g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046100.1) 0.671959658775407 6.08808315629583 8.24003905324369e-05 1 6.88996246755753 8.45245817622973 0.671959658775407 0.123601584766874
AT1G73020_at 3.95631854390612 4.05929496899940 3.59880791441987 3.20662716536002 2.85904389137386 3.10864116768963 4.23107626772306 3.89438332929194 4.50946181912083 3.97108514929145 3.88293504127494 3.84958700791054 3.84025335026072 3.85255914927148 4.03056281052527 3.49465742708586 3.27715766105336 4.04534505332994 4.05447716000692 0.195711223997775 0.195918795495514 0.211388501520188 0.200918408498035 0.206064192517383 0.202466604920656 0.195711223997775 0.202535048103671 0.203808860153905 0.196024401261785 0.199730844383748 0.197367281727019 0.200423365036827 0.20090109751257 0.199060509055222 0.197868158087302 0.197597392380472 0.199772995402163 0.204002547609705 1 0|1 /|- 27473498 27473984 27473658.111 27473195 27477145 - gene protein_coding_gene FALSE TRUE AT1G73020.1 similar to PREDICTED: similar to CG15270-PA, isoform A, partial [Bos taurus] (GB:XP_614009.2); similar to Os01g0706700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044018.1); contains InterPro domain Protein of unknown function DUF590; (InterPro:IPR007632) -0.618098715660003 -6.08736023835076 8.24845530423314e-05 1 6.88915099331046 7.59551093795986 -0.618098715660003 0.1009178505217
AT1G09300_at 2.40926046032142 2.54075165277256 2.22728820348311 2.17716723302038 1.70579584397671 1.76949155472553 2.43828835197441 2.24349603308422 2.09051669154883 2.31825426625478 1.57890741380219 1.70067408492360 1.60737564331843 1.35833316714708 1.32385915075683 1.86111279993580 2.15097336815118 1.54579394217843 2.30775813065433 0.203026077106496 0.199247740956126 0.203098638062786 0.199479036598320 0.205372480777759 0.198455801109711 0.201114659496841 0.199333857513718 0.205257354547158 0.204303760604981 0.199968121948022 0.199071555487651 0.202023909897286 0.206227832062945 0.204713780088160 0.204377088667728 0.204338907056061 0.207071777435823 0.200829115598450 1 1|0 +|/ 3006200 3008068 3007332.5 3003921 3008215 + gene protein_coding_gene FALSE TRUE AT1G09300.1 metallopeptidase M24 family protein similar to X-Pro dipeptidase [Arabidopsis thaliana] (TAIR:AT4G29490.1); similar to metallopeptidase family M24 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98962.2); similar to Os12g0563500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067037.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24B, X-Pro dipeptidase/aminopeptidase N-terminal; (InterPro:IPR007865); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) -0.517988874473005 -6.08494208742684 8.2766743563841e-05 1 6.88643596315201 4.12880327955113 -0.517988874473005 0.0430218336963735
AT1G03950_at 7.61929362059125 7.60507178867548 8.03045262947868 7.97961380838435 8.10507179308303 7.8822583593058 7.71215672829448 7.48760472337218 6.68652404629659 6.46431576911578 6.85419435438607 6.93760413797783 7.12400274712658 7.3182740736937 6.87289013125631 7.45573428487932 7.51292846358051 7.07797159500694 6.26025277309042 0.155899261887368 0.157429369812774 0.159662922158464 0.156863662006321 0.159272849899955 0.165258584208282 0.160743811364225 0.154993458033299 0.176717417843687 0.165376794147282 0.159303226704228 0.161359148836637 0.161679499567147 0.167988812208032 0.170539200954745 0.154993458033299 0.166943470123262 0.16264545481827 0.163052702579161 1 1|0 -|/ 1011395 1012645 1012154.875 1011171 1013364 - gene protein_coding_gene FALSE TRUE AT1G03950.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G44560.1); similar to Os10g0476400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064848.1); similar to BRI1-KD interacting protein 109 [Oryza sativa (japonica cultivar-group)] (GB:BAD11337.1); similar to Os03g0639800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050739.1); contains InterPro domain Snf7; (InterPro:IPR005024); contains InterPro domain Putative DNA binding; (InterPro:IPR009061) 0.533576604825215 6.08128089574801 8.31959576960332e-05 1 6.88232334949044 14.6099725162262 0.533576604825215 0.0555007312105679
AT2G28260_at 2.98829187582439 3.28204420521756 2.59202941286680 2.26893692515492 2.4880964548896 2.34417850080114 3.29826542823644 3.1950778024887 3.61017546076936 3.49829027250787 3.33303156703699 3.50878358360523 3.03205002997418 3.11929318607146 2.94777068012922 3.19214652015989 2.39835906938976 3.19006304429698 3.32190826697539 0.22296942915621 0.225624980703308 0.229934539701865 0.231458042067580 0.234522335766074 0.236083896852619 0.234922884263252 0.223036148211338 0.236889748502683 0.227584102556499 0.226399579564235 0.230411062225025 0.227456775472398 0.224704392122802 0.229749610474657 0.22296942915621 0.234736047482865 0.231026104262696 0.230294216544306 2 2 + 12058948 12059455 12059203.727 12057066 12059530 + gene protein_coding_gene FALSE TRUE AT2G28260.1 ATCNGC15 (cyclic nucleotide gated channel 15); calmodulin binding / cation channel/ cyclic nucleotide binding member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 15 (Cyclic nucleotide- and calmodulin-regulated ion channel 15) (CNGC15) [Arabidopsis Thaliana] (GB:Q9SL29); similar to ATCNGC14 (cyclic nucleotide gated channel 14), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G24610.1); similar to ATCNGC17 (cyclic nucleotide gated channel 17), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30360.1); similar to ATCNGC6 (CYCLIC NUCLEOTIDE GATED CHANNEL 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G23980.1); similar to Cyclic nucleotide-binding; Ion transport protein [Medicago truncatula] (GB:ABE89042.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.577106813924116 -6.07967679948009 8.33847600359902e-05 1 6.88052073571103 6.09060434743519 -0.577106813924116 0.0815451590433361
AT3G02790_at 7.52240833043317 7.67675618441209 5.8113651470717 5.83677772769308 6.50082515441779 6.80367729192406 6.64427681882196 7.0988984198147 7.43055689025888 7.01811056361394 7.30103186311783 7.69301637051015 6.82960657641297 7.1355915923533 7.94227260795697 7.48129998861272 6.4781019993791 6.2039977796909 7.62599357258261 0.195032375366844 0.192895602718446 0.201523931565390 0.199854085012976 0.194157572460056 0.189528214866723 0.192159881989787 0.195817322393476 0.204898339227349 0.189528214866723 0.201381945170052 0.193048116646771 0.189528214866723 0.206625777366428 0.192315648173303 0.189528214866723 0.20209903848917 0.197972604295582 0.19380949953918 3 3 + 604981 605209 605099.364 604852 605428 + gene protein_coding_gene FALSE TRUE AT3G02790.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G16470.1); similar to hypothetical protein MtrDRAFT_AC148171g28v1 [Medicago truncatula] (GB:ABE89815.1); contains domain C2H2 and C2HC zinc fingers (SSF57667) -0.611264551495694 -6.07611555411896 8.38055571848382e-05 1 6.87651716426685 13.9825407290266 -0.611264551495694 0.0983324066050318
AT3G13650_at 1.55224485428007 1.27242300278496 1.09741141469921 1.44226868388642 1.70531985962376 1.01315665739280 1.56821086644193 1.42716900938148 0.73269804754127 1.72770066157414 3.11635438318792 3.76513283566402 2.27978744907008 3.59614820171016 4.07225624105279 2.12381002793483 1.87719445981464 3.14774215736863 1.76289931699207 0.217357437307948 0.206701852469501 0.207685335708925 0.210071546278658 0.206701852469501 0.211690784963409 0.215897552734174 0.208570349947198 0.214850768825506 0.207312363442664 0.211491694068097 0.219929848579663 0.207050427342896 0.215005517699379 0.212083575989518 0.208678307461940 0.219742986466081 0.206701852469501 0.218227592155304 3 3 + 4463194 4463546 4463356.909 4462899 4463879 + gene protein_coding_gene FALSE TRUE AT3G13650.1 disease resistance response similar to disease resistance response [Arabidopsis thaliana] (TAIR:AT1G55210.1); similar to disease resistance-responsive family protein [Arachis hypogaea] (GB:AAZ20288.1); similar to Os12g0174700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066288.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.724532215725666 6.07356646923919 8.4108150099419e-05 1 6.87365011539911 3.58731015765027 0.724532215725666 0.144395375090838
AT2G35820_at 2.37206212726037 3.22823422407066 2.63567578932933 2.86760764709011 3.07012698565564 2.92620441732701 2.34105519969812 1.99408450617072 2.23137820468729 2.67166269579384 3.75375906502486 3.48896656444047 4.61846005224949 3.52668820303835 3.58437671777842 4.09709531684239 4.45067469888387 2.33045040777469 2.74452307392742 0.190651935429982 0.192979730961902 0.192601862446396 0.192030539108040 0.188283012550975 0.188456246328191 0.192705943281354 0.191990614742352 0.203378155917961 0.190268511258929 0.191683219787665 0.196502379905237 0.19990984675037 0.190945089004609 0.196049248469425 0.191319874060762 0.189171836422042 0.190163938171074 0.191803577502636 2 2|0 +|/ 15058012 15059046 15058595.9 15057991 15059318 + gene protein_coding_gene FALSE TRUE AT2G35820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35810.1); similar to hypothetical protein MtrDRAFT_AC152818g11v1 [Medicago truncatula] (GB:ABE77875.1) 0.786582791167555 6.07191867438032 8.43043749866243e-05 1 6.87179617914167 5.81962979693704 0.786582791167555 0.166701628566204
AT1G15580_at 3.24271734886325 3.2329226072046 4.43595924158994 4.60353142723377 5.27075204057074 4.6244209788177 4.32805646984779 4.08308373585621 5.20178440507394 4.1028472264898 5.51248502498763 5.52789349479944 4.73008238968051 3.68312013457 6.8811548138979 4.9234899614341 4.64580478028190 5.17951792907308 5.12517807344844 0.258074714540439 0.248600209515143 0.248697292922270 0.245098971218883 0.244272228932416 0.254415724478844 0.241772394664237 0.241474395973782 0.249477278869740 0.244860483048100 0.24957400511384 0.253180447410392 0.242840883781729 0.260643015337366 0.260877010299209 0.241474395973782 0.2455500826036 0.241474395973782 0.252000689126124 1 1|0 -|/ 5366114 5366413 5366278.5 5365660 5366477 - gene protein_coding_gene FALSE TRUE AT1G15580.1 IAA5 (indoleacetic acid-induced protein 5); transcription factor auxin induced protein Identical to Auxin-responsive protein IAA5 (Indoleacetic acid-induced protein 5) (Auxin-induced protein AUX2-27) (IAA5) [Arabidopsis Thaliana] (GB:P33078;GB:Q38823;GB:Q8H1E0); similar to IAA19 (indoleacetic acid-induced protein 19), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15540.1); similar to IAA5 (GB:AAC49046.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.668738939681626 6.07043097208247 8.44819556300321e-05 1 6.87012195766303 9.20037054846198 0.668738939681626 0.123091856217395
AT1G51460_at 1.80890134420514 1.74410580467141 1.91580648402216 2.14100173584354 1.87921778590531 1.96420304515701 1.94488489704304 1.61576503295604 2.12821621866399 2.06516568146509 2.83682924462503 3.68284835750400 2.60141974110950 3.05883543888117 3.62542284249028 3.45840956061212 2.24379655022304 2.88531565458559 2.20000891323451 0.172941757226939 0.174110847426210 0.172941757226939 0.181213244340250 0.172941757226939 0.176536158832056 0.176113917419601 0.180558285123089 0.182123460503351 0.176652970370159 0.174789076410424 0.172941757226939 0.177247096666654 0.183473749374953 0.179914781203292 0.178964730875006 0.173362353373204 0.180773426243334 0.174546867264837 1 1|0 -|/ 19080805 19081551 19081176.4 19080650 19085101 - gene protein_coding_gene FALSE TRUE AT1G51460.1 ABC transporter family protein Identical to White-brown complex homolog protein 13 (WBC13) [Arabidopsis Thaliana] (GB:Q9C8J8;GB:Q8GX48); similar to CER5 (ECERIFERUM 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G51500.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Os10g0494300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064944.1); similar to Os05g0222200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054952.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.557311197822871 6.06538819083623 8.50868696771915e-05 1 6.86444407879792 4.46685573866297 0.557311197822871 0.0714474245812823
AT2G20670_at 6.80654858407123 7.48330824589048 6.75246534377516 6.39794874042831 8.90891710086017 8.76302977821244 9.18917598271786 8.91364666888903 8.95464232214392 8.71689622376663 7.86884601642791 8.39302610974262 7.68096903007335 8.2548020713173 7.51426111356084 6.65149412453446 7.76473734830293 7.2497181443161 8.47985649670908 0.243721301960841 0.226583767757964 0.227286972705988 0.224695966951451 0.220611286186746 0.225838464298296 0.223567474428151 0.220327788127137 0.226844724039167 0.227674752150484 0.220513289620101 0.220139689602794 0.230830805441988 0.226403614408096 0.231835887277447 0.230613311870294 0.229115042471529 0.224800691434318 0.222538142339115 2 2 - 8919274 8920114 8919632.909 8918941 8920615 - gene protein_coding_gene FALSE TRUE AT2G20670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32480.1); similar to Protein of unknown function DUF506, plant [Medicago truncatula] (GB:ABD32359.1); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -0.71873978283095 -6.06104436422519 8.56116493254617e-05 1 6.85954963519919 16.0965617684344 -0.71873978283095 0.142797382673895
AT3G54220_at 5.17792944336386 5.47445876495328 4.87099490027056 4.55078169346752 4.43529659623449 4.80385795848535 5.57371350530931 6.02763008751148 6.34492481613876 5.81755473444202 5.56237964825388 5.31829600016266 6.1938713785298 5.9573099084595 5.56075141900044 5.73563148510962 5.29186849989313 5.26024421017478 6.02655362467090 0.213440669568741 0.205987670188738 0.217062094807186 0.213505167150971 0.205987670188738 0.214661436355388 0.215466623526189 0.205987670188738 0.224216565283877 0.215695413080057 0.211140677478882 0.210604903399880 0.205987670188738 0.21956811758092 0.20950072645147 0.209132636700078 0.228117261450290 0.210423125199169 0.227835548032987 3 3 + 20082892 20083568 20083185.727 20081136 20083758 + gene protein_coding_gene FALSE TRUE AT3G54220.1 SCR (SCARECROW); transcription factor Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G41920.1); similar to SCARECROW [Cucumis sativus] (GB:CAI30892.1); similar to SCARECROW [Pisum sativum] (GB:BAB39155.1); similar to SCARECROW [Ipomoea nil] (GB:BAE48702.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.675583576444626 -6.06039006629735 8.56909944877549e-05 1 6.85881211486856 10.9508604322571 -0.675583576444626 0.126263969872008
AT3G06720_at 7.51251211579811 7.58702128832556 8.08856731166823 8.23813798796474 7.65215765624093 7.79756572956407 7.7917546632362 7.84007673043547 6.42421306567153 6.79522244491627 7.3259499076835 7.35069914034576 7.17549626463768 7.62818377940259 7.34550886656168 7.61513731175801 7.54728063935943 7.05062859889048 6.63335591729061 0.188357930450559 0.186133157795363 0.183354058946777 0.183354058946777 0.189068138706762 0.197709567361394 0.186788708950243 0.187796581609148 0.210515916609338 0.198165081583599 0.189663411757670 0.196566318795912 0.188779351610544 0.199014849175475 0.185713317673463 0.187164931035563 0.197708507318054 0.194833740541287 0.198824246528349 3 3 + 2122954 2123536 2123299.727 2120330 2124137 + gene protein_coding_gene FALSE TRUE AT3G06720.1|AT3G06720.2 AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81520;GB:Q940R6;GB:Q9C841;GB:Q9ZRI5); similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to importin alpha-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G02690.1); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to Importin subunit alpha (Karyopherin subunit alpha) (KAP alpha) (GB:O22478); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.511764696432206 6.05989695009154 8.5750845430928e-05 1 6.8582562282741 14.8122030385072 0.511764696432206 0.0392347913936995
AT1G57750_at 0.400186127301941 0.705410877078117 1.06790633100737 1.23224171666300 0.943506580369566 0.771004391191155 1.55138939198494 1.17477701440732 1.19130378633337 1.23198541743012 2.72827501933944 2.43462653561598 1.37588377638443 2.2623186069491 2.96714559071343 1.98348172058241 2.13983930642455 2.97014566143364 1.19181568893449 0.211428743390601 0.201945853048126 0.211759211978062 0.213174090923515 0.201945853048126 0.207206451194290 0.205774508489909 0.204411013360645 0.204815376601056 0.210138448391422 0.215223247136562 0.202213959060704 0.207910823270268 0.206273365252504 0.205170296564812 0.201945853048126 0.220275910002770 0.210122160554295 0.207738316015269 1 1 - 21387885 21388396 21388133.455 21387646 21389374 - gene protein_coding_gene FALSE TRUE AT1G57750.1 cytochrome P450, putative similar to CYP96A3 (cytochrome P450, family 96, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G65340.1); similar to CYP96A4 (cytochrome P450, family 96, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G52320.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93891.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.599201732531203 6.05961349409686 8.57852695161408e-05 1 6.8579366710722 2.76217754945694 0.599201732531203 0.0934754978940436
AT1G56430_at 5.56367611687833 6.0782544017569 6.73516422330702 6.86326866644752 7.847926476027 7.55736316403892 7.88263649011286 8.44756978807967 5.37490689714849 7.34467939239651 7.36760991190691 7.40824400016448 8.46101972745122 8.3468352567133 7.01283220693996 7.79708597958018 8.23193895994395 6.49327131042368 6.65641302595635 0.211443286366202 0.212149040974052 0.214431149368345 0.209364057932453 0.213692660201834 0.215203713069963 0.2192428200343 0.214335139723987 0.233163206458735 0.209364057932453 0.212311891331922 0.209364057932453 0.213427511113733 0.221688747999623 0.221929186527181 0.209364057932453 0.219103470142443 0.22221663051191 0.211741113842988 1 1 + 21141121 21141574 21141349 21140609 21141752 + gene protein_coding_gene FALSE TRUE AT1G56430.1 nicotianamine synthase, putative Identical to Probable nicotianamine synthase 4 (EC 2.5.1.43) (S-adenosyl-L- methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 4) (NAS4) [Arabidopsis Thaliana] (GB:Q9C7X5); similar to nicotianamine synthase, putative [Arabidopsis thaliana] (TAIR:AT1G09240.1); similar to nicotianamine synthase [Thlaspi caerulescens] (GB:CAC82913.1); contains InterPro domain Nicotianamine synthase; (InterPro:IPR004298) 0.719542331944093 6.0585863331443 8.59101359664677e-05 1 6.8567785728147 14.1712429696515 0.719542331944093 0.143205032518480
AT4G37290_at 1.96540837511135 2.03234171795651 3.51383909934081 3.32690555022592 2.77558125284818 2.84775546347406 1.79057411651801 1.5324661200899 2.03655194613691 2.43022466375208 1.95054032719875 1.77421737802943 1.89141182932709 2.17564641045231 2.28273566006107 1.57615267898657 2.01531739145342 2.30807928151862 2.17415499610468 0.210671235512486 0.214476233448795 0.216383031808547 0.231053292249670 0.218470358501778 0.216294035624152 0.224151771149657 0.216492255517626 0.210799841765240 0.212793867164678 0.211695585455064 0.210671235512486 0.212467364686147 0.217473507655258 0.212635540504545 0.222865570121482 0.217743754598947 0.212319691336215 0.213082051843176 4 4 - 17549941 17550137 17550049.273 17549678 17550251 - gene protein_coding_gene FALSE TRUE AT4G37290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23270.1) 0.534470755008574 6.05522524020047 8.6320084842855e-05 1 6.85298774072986 4.57831220609208 0.534470755008574 0.0577217283947809
AT4G04500_at 7.92213265258716 8.16188423458889 8.7833009586689 8.57277020682066 6.15287199707974 6.58864058977345 2.24880086061691 1.60845493117438 3.77644663180553 2.85721792146609 1.70705391510574 1.53057663079419 2.4268784680631 2.08852325497053 1.99609411576145 2.45578231736203 2.16649881891556 2.22468848167404 2.86542869848912 0.313490584479234 0.310731806173678 0.309178942306193 0.318017836985698 0.309166547541068 0.305341427379150 0.298650492748521 0.304429110096276 0.292986233943739 0.298226556427059 0.292146651120777 0.293407315119021 0.299162973755065 0.297636595019228 0.292384594237823 0.291390860475259 0.299329618028269 0.294315069488439 0.291390860475259 4 4 + 2240142 2240733 2240553.545 2238409 2240863 + gene protein_coding_gene FALSE TRUE AT4G04500.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04540.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04490.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04510.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.723612675710553 6.05292060970534 8.66023853965053e-05 1 6.850387310307 8.87529526270596 0.723612675710553 0.144967881987027
AT3G28940_at 10.6653423733481 10.6111527035988 11.0688417867244 11.0995216985254 11.0221795973106 10.6902193213512 10.0355042598994 10.1255143152754 10.4622572424342 10.2030122647344 10.6836449055191 10.7855666801129 10.4753511766937 10.8138416056800 10.6949954276193 10.6536058345133 10.4436367271511 10.8199379544278 9.95096250334601 0.0938943268440778 0.0916888651340264 0.101164260728927 0.0991436110104208 0.097637631589466 0.100358702853544 0.0907916952304227 0.101192788546308 0.0964637995649412 0.091337301032379 0.0940837337262885 0.09311981784255 0.0959160728738455 0.0960119746654994 0.0920689720806873 0.0956286599142482 0.0936834797370502 0.0906743293511589 0.0966817495267538 3 3|0 -|/ 10969572 10970518 10970098.3 10969337 10970624 - gene protein_coding_gene FALSE TRUE AT3G28940.1 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative similar to AIG2 (AVRRPT2-INDUCED GENE 2) [Arabidopsis thaliana] (TAIR:AT3G28930.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to Os02g0141000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045856.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 0.538362028370289 6.05277268740105 8.66205384549336e-05 1 6.85022037054432 21.1031511115723 0.538362028370289 0.0604892797850797
AT2G39460_at 9.9128341480752 10.4733249878552 9.61152877704385 9.64463746196365 9.69475317102379 9.46103351150658 10.4635707981205 10.7903542233765 10.4222885043348 10.1298518192765 9.76341181469625 10.1248446969510 9.71198270717394 9.65027303364618 10.1644168529429 9.46769075619858 9.1743855373078 9.56741626651563 10.0812139331608 0.103234538434020 0.0990849560591629 0.104227714491718 0.106367762045168 0.100807008083044 0.102764458863724 0.0996703567607685 0.0992145521114293 0.103823523818425 0.0991438208080635 0.101748304029989 0.0990849560591629 0.105114172429426 0.10280532181342 0.102246312294009 0.0990849560591629 0.116367256554609 0.108332823878668 0.101763095129915 2 0|2 /|+ 16482490 16482927 16482672 16482001 16483186 + gene protein_coding_gene FALSE TRUE AT2G39460.1 ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome Encodes a putative ribosomal protein L23a (AtrpL23a). Identical to 60S ribosomal protein L23a-1 (AtRPL23A-1) (RPL23AA) [Arabidopsis Thaliana] (GB:Q8LD46;GB:O48553;GB:O80633); similar to 60S ribosomal protein L23A (RPL23aB) [Arabidopsis thaliana] (TAIR:AT3G55280.2); similar to unknown [Brassica rapa] (GB:ABB97038.1); contains InterPro domain Ribosomal protein L23, N-terminal; (InterPro:IPR005633); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ribosomal protein L25/L23; (InterPro:IPR013025); contains InterPro domain Ribosomal L23 protein; (InterPro:IPR001014) -0.657549093192013 -6.04972259717529 8.69957535376193e-05 1 6.84677729949095 19.9635900317555 -0.657549093192013 0.119477728559590
AT1G49980_at 4.38327574772427 4.46435156292205 4.19334045905822 3.72414688045892 4.17108348975532 4.33638242579191 4.82391217567087 4.73551597736162 4.15128487595398 4.85123944715622 4.11975546726481 4.16597815406809 3.93141906159698 3.59318400005955 3.86080148679015 4.07256958978608 4.43558761071431 3.97283707598457 5.0958996844819 0.213227855965544 0.212873188718338 0.212966487086178 0.210366789017218 0.210366789017218 0.210366789017218 0.216411695791334 0.215065203584843 0.211101188308415 0.214951705708819 0.230615515450889 0.222927246559254 0.214388702858625 0.218068313894426 0.216515054562893 0.211815199930561 0.221524281748232 0.215256009824117 0.222366599179487 1 1 + 18515333 18516721 18515978.8 18511639 18516840 + gene protein_coding_gene FALSE TRUE AT1G49980.1 similar to REV1 (Reversionless 1), damaged DNA binding / magnesium ion binding / nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT5G44750.1); similar to putative DNA-directed polymerase, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81653.1); similar to Os03g0616300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050660.1); contains InterPro domain UMUC-like DNA-repair protein; (InterPro:IPR001126) -0.587991832783956 -6.0489680961284 8.70888381015484e-05 1 6.84592533670986 8.71324670233312 -0.587991832783956 0.0885548848996156
AT4G28770_at 8.32925888955001 8.41614622478663 8.74902152195117 8.83520050955092 9.16409613989156 8.8406055082333 8.43610079054802 8.0894294142461 7.5636063429001 7.75159323954106 8.42495543826436 8.18954425578874 8.17507473563827 8.33891999571691 8.14536737577365 8.03767243146662 8.20370513100772 8.1147752361061 7.55256516023002 0.143331452576028 0.143331452576028 0.158315253663631 0.153824934951118 0.158562707629240 0.150054144571919 0.149193482210849 0.145138361467435 0.163634297663951 0.159477407817626 0.143331452576028 0.143331452576028 0.151447743518702 0.153518471352845 0.151505249240006 0.151730661525112 0.14755998399483 0.159799813438685 0.157780530527681 4 4|0 -|/ 14212369 14213253 14212856.25 14211930 14213677 - gene protein_coding_gene FALSE TRUE AT4G28770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20230.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE93060.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.580330333768645 6.04835030900403 8.71651351613805e-05 1 6.84522767384808 16.5206524111084 0.580330333768645 0.0847444039562338
AT2G21580_at 8.31870003310324 8.4533298197599 7.38865984525289 7.33175502895512 7.47647241980611 7.11572898557064 8.32898483452882 8.58987112004434 8.09055921744984 7.59090297490819 7.8665851827901 8.51932954947677 7.46905004882585 7.46385055733412 8.68539838150026 7.19824327255335 7.34095131650504 7.00004842551567 7.55194179403084 0.206429417237531 0.209658752690447 0.210659039075897 0.21156177950018 0.211645801433337 0.212057278352903 0.206506625049415 0.210519108878609 0.219746829340129 0.212993923039369 0.207988933793598 0.208068034951825 0.209255913883165 0.214826328637731 0.210139265838342 0.202992125670081 0.217759854516117 0.213194524889462 0.207149699594206 2 2|0 +|/ 9243830 9244521 9244164.375 9243603 9244891 + gene protein_coding_gene FALSE TRUE AT2G21580.1|AT2G21580.2 40S ribosomal protein S25 (RPS25B)|structural constituent of ribosome Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago truncatula] (GB:ABE85391.1); contains InterPro domain S25 ribosomal protein; (InterPro:IPR004977)|Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago truncatula] (GB:ABE85391.1) -0.573051642806595 -6.046117821109 8.74414443792685e-05 1 6.84270598583834 15.5941378045154 -0.573051642806595 0.0810887726347041
AT1G61350_at 5.70726727629324 6.12274860130659 3.89816489262764 4.15898338580919 4.69222568248696 4.38977165099998 4.83165078654761 5.22924276964142 5.65903359836434 5.36593940958356 5.82427733499209 6.37995197458813 5.38516034685272 5.43733601374409 5.40399703466498 5.80292542828004 4.91971306357574 4.79986645326875 5.86111842854296 0.209680195370657 0.202607182074708 0.203546143889535 0.204849576100365 0.200992028826342 0.205356691955046 0.202712691319414 0.200510931810161 0.207424512246053 0.199095089969311 0.202813289644637 0.199095089969311 0.199095089969311 0.206739882619374 0.199095089969311 0.206489971532251 0.206070095128844 0.203430640131281 0.203653575981355 1 1 + 22638919 22639460 22639157.364 22637547 22639559 + gene protein_coding_gene FALSE TRUE AT1G61350.1 armadillo/beta-catenin repeat family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G45720.2); similar to Armadillo [Medicago truncatula] (GB:ABE88966.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.661242322358705 -6.04565069392412 8.74993777608364e-05 1 6.8421782363599 10.4401821815855 -0.661242322358705 0.121164077223742
AT1G73110_at 7.97070697153125 7.9016427229658 7.19056016480519 6.99805922893218 7.84411791524306 7.33080122730297 8.375544765714 8.4104249473854 8.31854879915707 8.48079275829702 8.21040347198598 8.40672339248336 7.81816159331452 7.86255343990377 8.56665151295003 8.1247268174916 7.43511856144948 7.58870745462164 8.35040056622726 0.161793214803766 0.161927871034957 0.177341354168276 0.170561003122934 0.157916097592163 0.169117846567530 0.161301388009289 0.162196441724981 0.174299356670665 0.164969357292566 0.159705502830305 0.156848738667728 0.159500142931845 0.159125579826420 0.163985821439822 0.16036653181796 0.186292756995742 0.170278397683988 0.156311936330961 1 0|1 /|- 27498071 27498844 27498520.875 27497782 27500539 - gene protein_coding_gene FALSE TRUE AT1G73110.1 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative similar to RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana] (TAIR:AT2G39730.3); similar to Os04g0658300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054128.1); similar to Rubisco activase 2 [Mesembryanthemum crystallinum] (GB:AAZ41846.1); similar to OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67790.1); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.602655905931833 -6.044477269319 8.7645087464748e-05 1 6.84085236065758 15.9451713205277 -0.602655905931833 0.095813091080894
AT1G43590_at 2.49136978355075 2.45749564286995 1.87408180476936 1.74531493494620 2.04580033461549 1.58242187539419 2.07143644541181 2.23296464602195 2.6218375661234 2.22045890276412 1.60250814988448 1.17475833459886 1.80458777828756 1.89048765921628 1.50345898083910 2.46444837539473 1.55023560315544 1.40844782574015 2.19518821477358 0.238774814080757 0.230937747396297 0.229800989517520 0.23046278563013 0.233377731656221 0.227862071787997 0.237751339843280 0.227862071787997 0.254873504074804 0.234348871014484 0.236533793914789 0.239347320889530 0.228016762167539 0.227862071787997 0.243188995773267 0.227862071787997 0.236621449491579 0.238671748403702 0.234345752009055 1 1 + 16416562 16417040 16416828.571 16416561 16417067 + gene protein_coding_gene FALSE TRUE AT1G43590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34838.1); similar to hypothetical protein 24.t00017 [Brassica oleracea] (GB:ABD64939.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912) -0.586186765764882 -6.0420753873339 8.79441493206914e-05 1 6.8381376782322 4.07295809158577 -0.586186765764882 0.0879926929773815
AT3G07820_at 1.19939022816538 0.646216411714598 1.19582495104145 1.07057771478204 0.991500260019934 1.36904681912773 1.55246422509571 1.31100993746355 4.82115567790656 0.996592597125701 1.02063627556403 0.818266611731984 0.91758383604751 1.45027275523421 1.09429278178914 1.40271332441603 1.04283625487163 0.77166894490173 1.33846364183896 0.219361825382939 0.216581106999264 0.222682789431661 0.220022667653651 0.218422303521835 0.218592399445667 0.223051855019959 0.225241950502663 0.256048769470744 0.219939211911119 0.219936326339397 0.216581106999264 0.223859297897467 0.216581106999264 0.227326474115125 0.217780911499909 0.221782776920701 0.234104056403614 0.217063412698258 3 3 - 2496612 2497243 2496874.182 2496446 2498101 - gene protein_coding_gene FALSE TRUE AT3G07820.1 polygalacturonase 3 (PGA3) / pectinase similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07840.1); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07830.1); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT5G48140.1); similar to pollen-expressed protein MF9c [Brassica oleracea] (GB:ABG38468.1); similar to putative pollen polygalacturonase [Brassica oleracea] (GB:AAM74219.1); similar to polygalacturonase [Brassica napus] (GB:AAP42648.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.670576444293948 -6.04179587824147 8.79790221395734e-05 1 6.83782170295731 2.89209772860627 -0.670576444293948 0.125094670037165
AT3G49010_at 11.1341345788671 11.2466453008084 10.6903851362163 10.6365225565283 10.3863915486210 10.2917487468971 11.0163108760030 11.2623147953949 10.3453290396347 10.5250857239536 10.0681856789586 10.4440153764782 9.86261345881797 9.83731080921506 10.7369633424573 9.76574885211213 9.62722210920892 9.90371946249848 10.3706367529287 0.091635878704475 0.0906967388785144 0.0911265036775385 0.08547459067173 0.0884503787983868 0.0938183908386257 0.0912066878772491 0.08547459067173 0.105054333177339 0.0890259550630638 0.089208238278066 0.0868891211386175 0.0910671788073666 0.0959269606771025 0.088730878557692 0.0871004045654186 0.0953294773377157 0.0879860196183987 0.085614165492995 3 3|0 -|/ 18177992 18178749 18178248.5 18177754 18179677 - gene protein_coding_gene FALSE TRUE AT3G49010.1|AT3G49010.2|AT3G49010.3|AT3G49010.4|AT3G49010.5 ATBBC1 (breast basic conserved 1); structural constituent of ribosome|ATBBC1 (breast basic conserved 1) Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). Identical to 60S ribosomal protein L13-1 (Protein BBC1 homolog) (RPL13B) [Arabidopsis Thaliana] (GB:P41127;GB:Q42280;GB:Q8LFC4); similar to 60S ribosomal protein L13 (RPL13D) [Arabidopsis thaliana] (TAIR:AT5G23900.1); similar to 60S ribosomal protein L13-1 (Cold-induced protein C24A) (GB:P41128); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380)|Identical to 60S ribosomal protein L13-1 (Protein BBC1 homolog) (RPL13B) [Arabidopsis Thaliana] (GB:P41127;GB:Q42280;GB:Q8LFC4); similar to 60S ribosomal protein L13 (RPL13D) [Arabidopsis thaliana] (TAIR:AT5G23900.1); similar to 60S ribosomal protein L13-2 (Cold-induced protein C24B) (GB:P41129); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380) -0.523275421661669 -6.04135550812325 8.80339946756515e-05 1 6.83732385227335 21.0552598049457 -0.523275421661669 0.0504640658466717
AT4G02850_at 3.24262270321817 3.42445650750889 2.49817653861761 2.35582258039166 1.63052075765550 2.06606033752619 5.80340930621207 6.11497373063307 2.17218133148131 4.95706195672581 4.96425126142847 7.15240716103254 4.69776350090778 4.78496428779784 6.85967945565728 4.59654204758843 3.47645721391134 4.75051131719287 4.50491040724339 0.277230058822938 0.277579468135072 0.290627563537934 0.292302955383317 0.284572141200477 0.280205634701801 0.277230058822938 0.277230058822938 0.284595822738264 0.277230058822938 0.279184634956403 0.278690163313767 0.281019191708384 0.277230058822938 0.281015875733969 0.280917434500098 0.286021759826008 0.280408147591761 0.279097331151085 4 4 - 1266732 1267389 1267094.727 1266463 1268612 - gene protein_coding_gene FALSE TRUE AT4G02850.1 phenazine biosynthesis PhzC/PhzF family protein similar to phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] (TAIR:AT1G03210.1); similar to Phenazine biosynthesis PhzC/PhzF protein [Medicago truncatula] (GB:ABE77454.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) -0.613224854736289 -6.03928097125513 8.82934583922658e-05 1 6.83497807575599 7.9111919389736 -0.613224854736289 0.100921482566170
AT2G47390_at 9.5858207327959 9.45399835308102 9.65139636611608 9.55439862062687 9.90752039067883 9.4785479462199 8.93526312665832 8.7056865169939 8.29181615734463 8.39299032531401 8.69969295785878 8.96884230881235 8.59932139310203 8.9577863206987 9.04687047924632 8.81497406279925 8.87520505270066 8.9792387835658 7.82619311764587 0.140675432480369 0.142234989327953 0.140350326212461 0.144525261992149 0.139457224038033 0.139878660626295 0.140779351754295 0.143097528201905 0.154058949212439 0.140870754911312 0.143327299641667 0.137145558198707 0.141670218539240 0.134724126201705 0.134693112897655 0.136771898549244 0.137761199928463 0.140788899284082 0.155077652646501 2 2 - 19449536 19450158 19449842.909 19449062 19453435 - gene protein_coding_gene FALSE TRUE AT2G47390.1 serine-type peptidase similar to acylaminoacyl-peptidase-related [Arabidopsis thaliana] (TAIR:AT4G14570.1); similar to Dipeptidyl aminopeptidases/acylaminoacyl-peptidases (ISS) [Ostreococcus tauri] (GB:CAL55196.1); similar to aminoacyl peptidase-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21362.1); similar to hypothetical protein XAC0805 [Xanthomonas axonopodis pv. citri str. 306] (GB:NP_641157.1); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain TolB, C-terminal; (InterPro:IPR011042) 0.587590934137309 6.03902434906421 8.8325611021879e-05 1 6.83468784880803 17.9281163166211 0.587590934137309 0.0888342839617713
AT1G01730_at 8.21099409580647 8.48218548157617 8.49923130459882 8.72338941872483 8.83043154634594 8.91846030812688 6.97797534449780 7.3498582203636 6.93568596674671 6.40669391654598 6.6780109388411 6.68580976316047 6.91873204537582 7.29879649621571 6.54137457168458 7.02617462297479 7.13005581492044 6.68071006739642 6.6921272155348 0.198987041836751 0.198987041836751 0.200405343536834 0.203225819318933 0.209137534533413 0.209753569795020 0.211638341618908 0.201707755473015 0.212815654104541 0.209246236734338 0.199899309281368 0.198987041836751 0.202822004505702 0.212331424556439 0.205962686862249 0.201985721922274 0.200526937460552 0.203786098149058 0.204755119858106 1 1|0 +|/ 271105 271846 271524.3 270967 272021 + gene protein_coding_gene FALSE TRUE AT1G01730.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28388.1) 0.589706933008388 6.03859050730999 8.83799962348963e-05 1 6.83419716922199 15.0231292515119 0.589706933008388 0.089894787854562
AT1G18360_at 8.50702176305143 8.49471694588335 7.32101811378564 7.04153259699704 7.8539390328726 6.96167150339268 9.72846688805389 9.61351490454563 8.8855553154085 9.29182858468481 9.43419719720932 9.90131900400216 9.46058614932445 9.43322871417336 9.58095528255916 9.22361371379585 8.51428081986483 9.26069745520264 9.13050768961567 0.116253417477167 0.113977532931254 0.135208220575838 0.127847578190030 0.118572171355107 0.150209744770206 0.117378448852070 0.118399487059584 0.126330445767776 0.113142434746006 0.113812419853216 0.117536207230373 0.113142434746006 0.126651136029164 0.119967080399917 0.115356231004343 0.120317070638503 0.121753024163793 0.113142434746006 1 1 - 6317046 6317836 6317383.636 6316688 6319420 - gene protein_coding_gene FALSE TRUE AT1G18360.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G73480.1); similar to Os09g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063095.1); similar to putative monoglyceride lipase [Oryza sativa (japonica cultivar-group)] (GB:BAD26447.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.771455275754051 -6.03547289318303 8.8771865278629e-05 1 6.83067014942393 17.4171053795325 -0.771455275754051 0.163040902259742
AT4G36910_at 4.19252348891512 4.43794784005102 3.74247202358635 3.5770693317781 2.57464278660176 2.96458173375457 4.6592615739045 5.5075384849207 3.63930773224489 4.24744698803821 3.74603813660868 3.63926289752746 3.5431250267529 3.95549296642989 4.14080134091605 4.07604142209257 3.79761500428153 3.66408191986663 3.85716932346953 0.210854032928105 0.210913878829643 0.204621413648926 0.205769671954412 0.213003976501886 0.209251060025639 0.213276226238506 0.220009401745863 0.216174857788001 0.204465831036396 0.206266599779435 0.205069288194308 0.206733344608682 0.203769098597734 0.206271332120293 0.203769098597734 0.205986154465506 0.203769098597734 0.212428357556994 4 4|0 -|/ 17391046 17393078 17392019.667 17390623 17393336 - gene protein_coding_gene FALSE TRUE AT4G36910.1 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) similar to LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) [Arabidopsis thaliana] (TAIR:AT4G34120.1); similar to Os08g0313200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061514.1); similar to putative CBS domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAQ56349.1); contains InterPro domain CBS; (InterPro:IPR000644) -0.78948019331286 -6.03267985428953 8.91245128904517e-05 1 6.82750888840339 7.82447900155252 -0.78948019331286 0.169489110721873
AT1G18480_at 5.73975075703978 5.93375908255708 5.87013738652453 6.145193608496 6.7296497205895 6.315767371261 5.51079123648253 5.47803181605749 4.45654460942344 4.19082873988179 4.80832159050834 4.9561020436727 5.16886220879253 5.24543807851502 4.74603589626382 5.15495648897542 4.70806135562936 4.57337690148549 4.34586210144825 0.238694012248491 0.227864313876197 0.231900893055128 0.239138934143924 0.231591971971808 0.250371551251018 0.232337671519014 0.227864313876197 0.235164612744893 0.231923842277607 0.238796591876005 0.227864313876197 0.227864313876197 0.242451067062243 0.231897402817591 0.23497903070001 0.239624643046904 0.245839089167666 0.228707638699222 1 1 + 6362233 6362767 6362489.091 6361622 6363000 + gene protein_coding_gene FALSE TRUE AT1G18480.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G07010.1); similar to Putative [Brassica oleracea] (GB:AAW81738.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.594334817789689 6.03112540211767 8.93214249734726e-05 1 6.82574891451503 10.5909965244084 0.594334817789689 0.0924939432809651
AT2G31880_at 11.8394887079873 11.9437323122202 12.2635049939896 12.3370678337739 11.7019008730394 11.5579336914721 9.39690522442383 9.5321238466978 11.1731040401558 9.91528479026065 10.2221187479835 10.3938051892109 9.91124640874066 10.4098899225917 9.7858556986425 10.2526579768181 9.8342675459622 10.1285089408298 10.0597924155085 0.106830878819409 0.109272314194422 0.110190138498665 0.112673381282385 0.111914762927160 0.114333953212521 0.111816291264893 0.108646583998575 0.109133606942833 0.109262409478286 0.105403437570505 0.105403437570505 0.108792464680022 0.1087971984895 0.112958961827203 0.105403437570505 0.113980642238446 0.108164319360351 0.113299453510311 2 2 + 13563362 13563895 13563606.636 13561973 13564054 + gene protein_coding_gene FALSE TRUE AT2G31880.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.510803023554452 6.03044364628394 8.94079337339414e-05 1 6.82497688740924 21.5715926283617 0.510803023554452 0.0406913472446823
AT2G46930_at 5.64354786598099 6.20839468540024 3.91428004821547 4.27705432272824 5.26252322832796 5.64805583073718 6.64711526788338 6.8220837117974 6.2513975434129 7.16504040470741 6.81639838406307 7.30010958702285 6.57194749142379 6.98095909785659 6.99754999382701 6.42273437717387 6.56551446370048 7.15008895816619 6.67519734253678 0.1918639422003 0.183879719030805 0.183630147719655 0.196172601805738 0.188157945921303 0.180067841602573 0.183639020064221 0.182842301647483 0.200187275636087 0.178315560965646 0.178575124367609 0.178315560965646 0.184624737205035 0.183100637133613 0.185401912927831 0.178315560965646 0.185351362265126 0.181187026304953 0.178604617223592 2 2|0 +|/ 19292271 19293098 19292738.889 19290588 19293416 + gene protein_coding_gene FALSE TRUE AT2G46930.1 pectinacetylesterase, putative similar to pectinacetylesterase family protein [Arabidopsis thaliana] (TAIR:AT3G62060.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34283.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.700677997330714 -6.03029454883082 8.9426864797929e-05 1 6.82480803715838 12.3268191489872 -0.700677997330714 0.137347682174826
AT1G14720_at 8.40255171312874 8.4959669989217 8.44292462675403 8.49652124840468 8.85319509978333 8.63153082682466 7.49352772664643 7.71771331287348 6.79002896802134 7.08098789389017 7.54602510794809 7.59906594752986 7.97976621002375 7.43094456742063 7.93665046459437 7.33998239623213 7.72835014358219 6.93995015911454 7.36043086593246 0.183828463513578 0.174492945611132 0.180964717537820 0.178418040871954 0.174629989427738 0.188468356783169 0.179416311581901 0.178169735332492 0.191889015326883 0.187034902933881 0.176388739981112 0.185573588652839 0.184891992933685 0.188677051380232 0.181581008550800 0.184374440484438 0.178561587423079 0.188437114953517 0.185311102858797 1 1|0 -|/ 5066814 5067786 5067071.3 5066631 5068640 - gene protein_coding_gene FALSE TRUE AT1G14720.1 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds member of Glycoside Hydrolase Family 16 Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28) (XTH28) [Arabidopsis Thaliana] (GB:Q38909;GB:O04750); similar to EXGT-A3 (endo-xyloglucan transferase A3), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT2G01850.1); similar to ETAG-A3 [Solanum lycopersicum] (GB:BAA88668.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.532022822245064 6.0285985312828 8.96425115292723e-05 1 6.82288705398689 15.6366120027523 0.532022822245064 0.0576542827166558
AT1G23400_at 8.923048746532 9.00639947285667 8.38377251927088 8.68412706799542 9.04407147880523 8.5487349757858 9.44359895194566 9.5013334560641 9.86534639117285 9.72680014648822 9.10734772189596 9.26582054707657 9.12514980112493 9.27376079698477 9.0456840715607 9.24944726748399 8.53285414676776 9.17472143356571 9.72126546454163 0.128753632038254 0.122323133599669 0.146674837558967 0.127111442047023 0.126581168503279 0.136956356632161 0.129528745291733 0.124317628836514 0.126549967223562 0.122323133599669 0.131910242618035 0.128045784378423 0.123241994138236 0.129584775568757 0.127286730665813 0.122323133599669 0.148331248003838 0.126552951227618 0.122323133599669 1 1|0 -|/ 8312225 8313191 8312577.7 8312065 8314733 - gene protein_coding_gene FALSE TRUE AT1G23400.1 ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20020.1); similar to CRS2-associated factor 2 [Zea mays] (GB:AAP22136.1); similar to Os01g0323300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042896.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.613853878572646 -6.02698143377186 8.98486409115328e-05 1 6.82105499157023 18.3758786123445 -0.613853878572646 0.101771993056404
AT1G79450_at 3.53768856750853 3.44038267141643 3.78459549795868 3.987848730362 2.67285962292342 2.21545746226821 1.65784069516439 1.02322660046757 0.997900296969587 0.766593550674106 1.80822598633561 2.20087557799813 1.39390299085823 1.59218345971305 1.29851271873474 1.42857676867724 1.68813513505282 1.87483772478106 1.21358161040467 0.281802526992799 0.27825255475229 0.283713387865989 0.266729800644492 0.261585100017012 0.261585100017012 0.261585100017012 0.261605054681808 0.263996017417098 0.265692653753315 0.261585100017012 0.261585100017012 0.263325613280041 0.262428246645203 0.261920359852757 0.261585100017012 0.261585100017012 0.277095630626785 0.261585100017012 1 1|0 +|/ 29894013 29894754 29894469.5 29892582 29895072 + gene protein_coding_gene FALSE TRUE AT1G79450.1|AT1G79450.2 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G16360.1); similar to Os06g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058302.1); similar to Os02g0173800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046043.1); similar to hypothetical protein [Lotus japonicus] (GB:BAD32828.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) 0.709185085329126 6.02342633924456 9.030358608292e-05 1 6.81702570443159 4.11666153831781 0.709185085329126 0.140880962847509
AT2G20550_at 3.25271510375291 3.323827151465 3.83980076680872 4.003165726238 4.15150441727926 5.05229838229565 3.31184774468164 3.87967287768277 3.00480329313110 3.57074602594347 4.32517731892478 4.26304322863590 4.2109725995319 4.52057896157142 4.31253553464541 4.48974561669931 4.33441873874781 4.46890755086273 3.94880196582232 0.199581091977399 0.200964373388628 0.198822335841127 0.203797248785069 0.208068023928243 0.217259979114117 0.203172973170768 0.203196870202837 0.204067044126354 0.200469049472112 0.201560850937668 0.201529326905609 0.212753117346153 0.204029340633416 0.201373399562148 0.203753115685637 0.212268656210222 0.215948027785413 0.204945330219349 2 2|0 -|/ 8853269 8853886 8853450 8852883 8854392 - gene protein_coding_gene FALSE TRUE AT2G20550.1|AT2G20550.2 DNAJ chaperone C-terminal domain-containing protein|heat shock protein binding / unfolded protein binding similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to DnaJ-like protein [Nicotiana tabacum] (GB:AAF05720.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095) 0.838615976248303 6.02117086258092 9.05934942449704e-05 1 6.81446823930199 7.78874879060951 0.838615976248303 0.186834946218509
AT1G76130_at 6.87737016599148 7.17561046549355 8.77364941296162 9.07705148918777 7.91216177500705 8.07675191858837 8.47018120374307 8.66108864720537 7.54833652948972 8.40747884989228 8.27984306971065 7.43059971401627 8.6571054367374 8.58399838031207 7.01736467062672 8.79110035045003 9.34595468264509 8.30360752855384 7.46387708955938 0.177309043583952 0.158065953344243 0.159707515128229 0.166966307259333 0.166210401137673 0.164244842847948 0.160033714778033 0.166776557735131 0.170816787121293 0.164399117928190 0.161058212062761 0.166505642909099 0.162025376318738 0.159060712265845 0.170289510114158 0.158792301100914 0.167742198463753 0.170433707373635 0.160338688635287 1 1|0 +|/ 28567928 28568783 28568364.4 28566175 28568970 + gene protein_coding_gene FALSE TRUE AT1G76130.1 AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis. similar to AMY3/ATAMY3 (ALPHA-AMYLASE-LIKE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G69830.1); similar to alpha-amylase [Malus x domestica] (GB:AAF63239.1); similar to cytosolic alpha-amylase [Malus x domestica] (GB:AAX33234.1); similar to alpha-amylase [Plantago major] (GB:CAH58639.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase beta-sheet, C-terminal; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046) 0.579236800572776 6.01994383200688 9.07516281601654e-05 1 6.81307654704758 16.1818635774949 0.579236800572776 0.0855764784896806
AT3G48970_at 2.54236882944733 2.31570152575512 1.77206119565652 1.68412619689237 1.87405370287689 1.83488323107712 1.87114521340134 1.81461492578340 2.27787802728855 2.11878206584264 3.45766929246429 4.2158615601457 3.42457599279358 3.18780738061698 3.90522526743884 3.91808809672172 3.65512035800681 3.33550284143851 2.40233677118233 0.22774241932248 0.224336614293854 0.231065776184122 0.232089537425976 0.222220244081847 0.224307795147217 0.238744714286324 0.225421206759360 0.241495168162412 0.230581107684121 0.231817035158739 0.238142695615743 0.228247428047835 0.229732862558294 0.223997392975213 0.228989443107209 0.224471340604286 0.224146418472788 0.225037998535512 3 3 - 18163400 18164076 18163575.545 18163273 18164360 - gene protein_coding_gene FALSE TRUE AT3G48970.1 copper-binding family protein similar to copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT2G18196.1); similar to copper-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87580.1); similar to Os01g0758000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044299.1); similar to Os03g0120400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048788.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.513236259313861 6.01980267082217 9.07698392450081e-05 1 6.81291642583733 4.91552617101517 0.513236259313861 0.0437252085494544
AT1G63680_at 6.22021592613971 6.76956736652604 5.72149961904988 5.94529606393999 6.29621334752849 6.26422274653895 7.27046249626538 7.15997347824979 5.84011265868287 6.68093510541208 5.90778839176208 5.94176717662123 5.62640817341524 5.35130034049337 6.31686235846841 6.60760595524057 5.66320576939301 5.59775433647748 6.42930376168955 0.209463496512233 0.205928056712733 0.203783653662849 0.217276681114659 0.209803176978596 0.217924271421293 0.214433830552994 0.213384320363468 0.213991809157349 0.211124345227936 0.218119574927859 0.209040369172228 0.209609528115237 0.213169905993987 0.222521407422660 0.212091121448299 0.217580914033916 0.209210084404040 0.211056679149647 1 1 + 23619836 23620736 23620293.727 23618100 23620764 + gene protein_coding_gene FALSE TRUE AT1G63680.1 PDE316 (PIGMENT DEFECTIVE EMBRYO); ATP binding / ligase mutant has Pale seeds and seedlings; Similar to Bacterial mur E Protein similar to Os10g0548900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065308.1); similar to MurE synthetase [Physcomitrella patens subsp. patens] (GB:BAE45858.1); contains InterPro domain Cytoplasmic peptidoglycan synthetase, N-terminal; (InterPro:IPR000713); contains InterPro domain Cytoplasmic peptidoglycan synthetases, C-terminal; (InterPro:IPR004101); contains InterPro domain UDP-N-acetylmuramyl-tripeptide synthetase; (InterPro:IPR005761); contains InterPro domain Nuclear receptor coactivator, interlocking; (InterPro:IPR009110); contains InterPro domain Mur ligase, middle region; (InterPro:IPR013221) -0.619222075862572 -6.01851736705041 9.0935834839631e-05 1 6.81145832673871 12.5526165828608 -0.619222075862572 0.104566134472072
AT2G29990_at 7.81086913407132 8.01052248632956 8.47274801986296 8.43764549890507 7.53577670359162 7.03960286828394 6.4911526907516 6.57642061822554 5.90734785750324 5.89283554915922 6.12330228152396 6.16833993375712 6.40884931372457 6.76073416151991 5.55691686648353 6.74600610671391 6.35446631321909 6.52492536278535 5.56263908945479 0.237865294927068 0.231868903111514 0.241814872435276 0.234236235647024 0.229856323150298 0.228896036507502 0.234192700234648 0.227855649849437 0.228523238366425 0.231291863333429 0.227363192682698 0.226496360459768 0.228839737707642 0.230790230179919 0.236069835209147 0.226496360459768 0.243922557269545 0.227502148081834 0.246502358990621 2 2|0 -|/ 12800640 12801437 12801033.6 12800417 12802990 - gene protein_coding_gene FALSE TRUE AT2G29990.1 NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); NADH dehydrogenase similar to NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G07180.1); similar to putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum] (GB:CAB52796.1); similar to Os07g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060003.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.596018542038287 6.01797597359726 9.10058522222432e-05 1 6.81084406236805 13.6058672730885 0.596018542038287 0.0939214617736107
AT3G61960_at 8.28957070084241 8.519662567312 8.91019129545172 8.99135094760605 8.94514006088347 8.5376440731477 7.674852899832 7.76009514616483 7.48778648108806 7.25751080212097 7.79233180221244 7.53195911064783 7.80195604484661 7.79801681045728 7.24067882248507 7.90868998671847 7.80687002883265 7.53643579412936 7.19134850156796 0.189445884388165 0.181554460050612 0.198931788773181 0.184517948063674 0.180892160448864 0.195329858462944 0.19456727329805 0.193997496123506 0.190141940910268 0.187731558346978 0.183940775714342 0.189807691912368 0.189507914927728 0.200094214594073 0.187461254825174 0.188168508913769 0.184370222975828 0.195033824306656 0.193238144655151 3 3|0 -|/ 22952947 22953639 22953254.7 22952747 22956263 - gene protein_coding_gene FALSE TRUE AT3G61960.1|AT3G61960.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G37840.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95170.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53930.2); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95170.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.574969152091657 6.01755161928874 9.10607734012564e-05 1 6.81036255468063 15.9482297422218 0.574969152091657 0.083506429587159
AT2G43320_at 3.7322203701838 3.75220677085249 4.22997304198916 4.3186483465332 4.16569412548508 4.24346742551231 3.52039232947917 3.04220284773385 3.43329143179146 3.32760412389462 3.85542801030951 3.17979046186109 3.48014524077368 3.37385139376006 3.77949917154781 3.73965864014572 3.97444746255874 3.72150963750594 2.86643499630911 0.202815832907870 0.204334968522037 0.20693510570339 0.215522804446657 0.199893098600041 0.208951874347781 0.203598122664441 0.202305679284215 0.208726635656819 0.197212177301354 0.199035731237213 0.19661356050529 0.204667580631256 0.204865115235764 0.204223182712593 0.199383657465943 0.218134214473797 0.200450003583789 0.205498740201324 2 2|0 -|/ 18004240 18004610 18004475.6 18003727 18007004 - gene protein_coding_gene FALSE TRUE AT2G43320.1|AT2G43320.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14000.1); similar to At2g43320/T1O24.6 [Medicago truncatula] (GB:ABE90565.1); similar to hypothetical protein MtrDRAFT_AC150786g4v1 [Medicago truncatula] (GB:ABE85983.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain UNCHARACTERIZED (PTHR21095); contains domain UNCHARACTERIZED (PTHR21095:SF6) 0.578310611813516 6.01589699714241 9.12752577389381e-05 1 6.80848478234935 7.29917637537424 0.578310611813516 0.0853032469602234
AT1G51890_at 7.26203689584513 7.58943412589743 7.77335241376873 8.15130770696313 5.5103919847948 4.81908995867043 0.999309502064446 1.23746685332262 2.88053384838289 1.77496990810189 1.08409003070561 1.32073244505233 1.51338727291548 1.25349322313929 1.02423903308853 0.873747692084418 1.47845028801212 1.1132842781805 1.39388930832471 0.297079864228399 0.286291425837609 0.289584233228932 0.280926754995350 0.290073542882168 0.302746792577213 0.268020881662781 0.268900773131739 0.27508550740362 0.270934868167142 0.273730763547746 0.268505951041515 0.276623905985349 0.272387803316971 0.270027006465430 0.275766819690077 0.268020881662781 0.268020881662781 0.268020881662781 1 1 - 19278473 19279055 19278714.909 19278471 19282197 - gene protein_coding_gene FALSE TRUE AT1G51890.1 leucine-rich repeat protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G51910.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51880.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51860.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.741343674863827 6.01220613785286 9.1755640402269e-05 1 6.80429443282448 7.02986987408273 0.741343674863827 0.153293279128637
AT3G11670_at 9.89429085027989 9.88509804092541 9.59984871047014 9.74309095381496 9.62848360606262 9.70202655548778 10.2433238662539 10.5180872053146 10.5785911240949 10.3833767372786 9.64314066984141 9.77050282994658 10.0509395856193 9.76447997162587 9.70286354046346 10.2304592314714 9.99323090598362 9.81299906162796 10.4122894670631 0.0612240634269479 0.0613243892857325 0.0649118443384736 0.0633133522873143 0.0648702600198832 0.0636338273854561 0.0633491849139485 0.0623190081058386 0.0648975737008452 0.0628551862419694 0.0644245738285107 0.0607150987038629 0.06179972603699 0.0619451545205097 0.0619723036587454 0.0607150987038629 0.0668602981019088 0.06185172111861 0.0617596072746288 3 3|0 -|/ 3681127 3681699 3681418.3 3680904 3684552 - gene protein_coding_gene FALSE TRUE AT3G11670.1|AT3G11670.2 DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); galactolipid galactosyltransferase/ transferase, transferring glycosyl groups|DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); galactolipid galactosyltransferase Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE). Identical to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (EC 2.4.1.241) (DGD1) [Arabidopsis Thaliana] (GB:Q9S7D1;GB:Q3EB81); similar to DGD2 (digalactosyldiacylglycerol synthase 2), UDP-galactose:MGDG galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G00550.1); similar to digalactosyldiacylglycerol synthase 1 [Vigna unguiculata] (GB:ABA55727.1); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW74); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW76); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296)|Identical to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (EC 2.4.1.241) (DGD1) [Arabidopsis Thaliana] (GB:Q9S7D1;GB:Q3EB81); similar to DGD2 (digalactosyldiacylglycerol synthase 2), UDP-galactose:MGDG galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G00550.1); similar to digalactosyldiacylglycerol synthase 1 [Vigna unguiculata] (GB:ABA55727.1); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW74); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW76) -0.526923167903828 -6.0112555378314 9.18798021733545e-05 1 6.8032148010042 20.0663625989352 -0.526923167903828 0.0551353098382422
AT2G22400_at 8.7005358713698 8.73888615913008 8.44498583412036 8.17057636241941 8.811956489546 8.6634300932708 7.38844317068737 7.57612512018507 6.27983659556 6.14989375408124 6.7417441473781 7.28215091309153 6.67359835423527 6.6876347719588 7.0895175666939 7.18684660584212 7.30665406237625 7.10127650250141 6.62828687224566 0.199438909177035 0.198887217274220 0.205647858954211 0.205786509816613 0.198428570666932 0.204701284392162 0.198428570666932 0.205331650769643 0.207160700026848 0.205657302482889 0.198528817219160 0.198428570666932 0.201906339637596 0.205050898113911 0.20443960824497 0.201637819377128 0.203154181520391 0.211915593001887 0.199190690526393 2 2 - 9511913 9512539 9512264.818 9511739 9515955 - gene protein_coding_gene FALSE TRUE AT2G22400.1 NOL1/NOP2/sun family protein similar to NOL1/NOP2/sun family protein [Arabidopsis thaliana] (TAIR:AT4G40000.1); similar to tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) (ISS) [Ostreococcus tauri] (GB:CAL56514.1); similar to Os09g0471900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063445.1); similar to Os08g0484400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062081.1); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) 0.53887253635505 6.0090500972828 9.21685552945921e-05 1 6.80070939185709 14.9925425239938 0.53887253635505 0.063361621981628
AT2G46240_at 5.29284846568496 4.84420371258517 4.37289199596771 4.27983196899256 4.61659718417061 5.0680387279674 3.19390489002963 3.04254929640403 3.31147710276482 3.60340207300360 4.49570394167735 4.31049388971256 3.98211467063837 4.90523652332461 4.2144571019362 3.78579293488 4.07198788314012 4.00597783052235 3.37759657265156 0.236673327685519 0.237792022350900 0.232423882177213 0.232423882177213 0.235523171322099 0.235052302950879 0.236732243808474 0.234361484772446 0.239752989571572 0.236662646944796 0.232423882177213 0.238678571055938 0.234224162487151 0.232423882177213 0.232423882177213 0.235386189670683 0.239387257099219 0.232423882177213 0.234699513678039 2 2 + 18996301 18996875 18996585.909 18993234 18997020 + gene protein_coding_gene FALSE TRUE AT2G46240.1 ATBAG6/BAG6 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6); calmodulin binding / protein binding A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40450.1); similar to Viral A-type inclusion protein repeat [Entamoeba histolytica HM-1:IMSS] (GB:XP_653447.1); similar to hypothetical protein cgd4_200 [Cryptosporidium parvum Iowa II] (GB:XP_625629.1); contains InterPro domain Apoptosis regulator Bcl-2 protein, BAG; (InterPro:IPR003103); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.64080436280212 6.00874148741019 9.22090380763694e-05 1 6.80035873922293 8.16500620345139 0.64080436280212 0.114353687248771
AT2G34560_at 7.76339080807116 7.4965038160204 6.06200735339816 6.31422839131655 7.74749121152085 6.81655047528087 9.27973993604689 8.97455919323865 8.70784091039697 9.11885314433468 9.33813448083695 9.12181372221646 8.98243857026753 8.97764728045706 9.1780956622872 8.87654778361153 8.56962794118578 8.94601747560414 9.15712831796634 0.181691000762438 0.189099835758757 0.207285330017472 0.205602995806467 0.185490007816224 0.206276131567872 0.180176700920830 0.176097256753893 0.185299228759339 0.188722873740765 0.178614035347461 0.179404133827208 0.176097256753893 0.187337058312943 0.179529520635323 0.180345570849270 0.186206304570016 0.180981311627520 0.182375757938800 2 2|0 +|/ 14568917 14569682 14569299 14567242 14570029 + gene protein_coding_gene FALSE TRUE AT2G34560.1|AT2G34560.2 katanin, putative similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE90089.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.81964808673642 -6.00720482943938 9.24108964070018e-05 1 6.79861249032655 16.5535078091739 -0.81964808673642 0.181057697372340
AT1G20540_at 8.21087912337673 8.1389921451618 7.61292901221010 7.52650936512206 8.50955884034662 8.2131364316976 8.22488675634078 8.2804265328764 8.77246133585686 8.76116012538486 7.9756488578004 8.36498206532014 7.72357301193633 8.31623763747974 8.38864214394045 8.10792119636455 7.40258893570413 7.8015633304098 8.91492653160394 0.154230738730527 0.146490134416952 0.164303588478143 0.175664948804267 0.155972322370849 0.163628481308856 0.156084682796813 0.146490134416952 0.155264788047433 0.150093580596075 0.148889092858725 0.146771657025260 0.154109996491555 0.150838045889377 0.151144145542459 0.151402707725312 0.161110452388076 0.146490134416952 0.146490134416952 1 1|0 +|/ 7113734 7114992 7114388.429 7112601 7115352 + gene protein_coding_gene FALSE TRUE AT1G20540.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G76260.1); similar to transducin / WD-40 repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD10224.1); similar to Os08g0554000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062463.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.527150372003639 -6.00490315096378 9.27141324640532e-05 1 6.79599610446459 16.5028284317172 -0.527150372003639 0.0556975310811096
AT3G08770_at 2.18611467922319 2.31703135955991 0.829392650606281 1.26975739884494 1.14093953222468 1.02566564241126 2.32447028452981 2.34096810972557 2.12248263458204 1.93825635919081 1.53488415269243 2.98933771210307 2.00462043583669 1.77970209419424 2.92009343703054 2.13979269671486 1.36795150341815 2.09224352239151 1.99582113631950 0.216568889259817 0.217151947425736 0.216955738211293 0.213999290900088 0.210625143127448 0.211791967333467 0.211341770738921 0.209893802723568 0.225666019430958 0.221827819108355 0.209893802723568 0.21985149127376 0.211031205335950 0.213793358498064 0.211423719285183 0.211036062212879 0.219521236176889 0.214959251440728 0.216433001415427 3 3|0 -|/ 2664490 2664765 2664622.6 2664145 2664834 - gene protein_coding_gene FALSE TRUE AT3G08770.1 LTP6 (Lipid transfer protein 6); lipid binding lipid transfer protein 6 Identical to Nonspecific lipid-transfer protein 6 precursor (LTP 6) (LTP6) [Arabidopsis Thaliana] (GB:Q9LDB4); similar to lipid transfer protein, putative [Arabidopsis thaliana] (TAIR:AT5G01870.1); similar to lipid transfer protein precursor [Davidia involucrata] (GB:AAL27855.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.570491242318798 -6.00052854014857 9.32934008229922e-05 1 6.79102080169 3.74050824263827 -0.570491242318798 0.08201778533609
AT2G43160_at 7.14285466722371 6.99412377409903 7.32271613115098 7.42691034061353 6.99292416597228 7.51832592762781 6.31809950126079 6.52745085937221 6.53708780174101 5.97596229131454 6.70724128878284 6.74088032489801 7.07184734648267 7.0491474599443 7.00360813434013 6.73529719946377 6.81993704761875 6.44121516665464 5.98170300977312 0.146720152961455 0.147524414568930 0.151176556278457 0.149825093380804 0.158343309218707 0.150162820384600 0.152656216402759 0.151864301138833 0.154404588064195 0.150862674432197 0.148085445156676 0.152632801649458 0.145027048295277 0.146188651455158 0.144584607477187 0.146273576855862 0.147289699030883 0.150470204909395 0.146087261350742 2 0|2 /|+ 17956938 17960307 17958967.611 17955139 17960746 + gene protein_coding_gene FALSE TRUE AT2G43160.1|AT2G43160.2|AT2G43160.3|AT2G43160.4 epsin N-terminal homology (ENTH) domain-containing protein|binding similar to (EPSIN3), binding [Arabidopsis thaliana] (TAIR:AT3G59290.1); similar to Putative epsin [Oryza sativa] (GB:AAK98696.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.612907992966229 5.99546416373678 9.39688352923519e-05 1 6.78525683863509 13.5234578943981 0.612907992966229 0.102796846740431
AT2G20390_at 5.22281888980853 5.02205674793613 5.1793474889866 4.5417710227658 4.35186324270671 4.64975135036987 4.95500517229428 5.06321026491982 4.87316658116179 4.99896578276039 3.65156674545199 3.57055732010963 4.09014792042897 4.08075761828478 3.41991263865628 3.98549811674349 3.86337629481310 4.20057988063316 4.5807238251983 0.220518861186766 0.212777275457452 0.216710324778247 0.217857769355298 0.214229612725566 0.220820855659593 0.211872264658038 0.223574499687613 0.216694311130039 0.211872264658038 0.218272069936997 0.215233835759208 0.214921241810738 0.214187604161269 0.217135085061881 0.217863451217735 0.225455600937683 0.221159171278544 0.213982152825632 2 2|0 -|/ 8803606 8805186 8804325.5 8803364 8805299 - gene protein_coding_gene FALSE TRUE AT2G20390.1 similar to expressed protein [Medicago truncatula] (GB:ABE92033.1) -0.672454327674548 -5.99286590515233 9.4317389070645e-05 1 6.78229791804484 9.21093717077197 -0.672454327674548 0.12802008741732
AT2G26200_at 5.44705003482753 5.98889994804046 5.55065984566627 5.66445555334765 6.53773216674082 5.98527962349638 5.31200814509739 4.96588332400114 4.11125956770463 3.99540704747868 4.95588674982270 5.53263136104576 4.81377486876893 5.28856516775928 4.73381663990218 5.05096819973095 5.43786488445762 4.84749717775571 4.31411269842839 0.258569073108393 0.249152841165546 0.254585620536910 0.252303761669614 0.249997534621574 0.257376581829358 0.248469045972526 0.247594156237314 0.254991353055886 0.255835209425032 0.247341269050429 0.247341269050429 0.249444120551238 0.257305587373473 0.251067644121937 0.247341269050429 0.250474392158508 0.253224835727067 0.247341269050429 2 2 + 11162850 11163375 11163055.545 11159804 11163544 + gene protein_coding_gene FALSE TRUE AT2G26200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54650.1); similar to SAM (and some other nucleotide) binding motif [Medicago truncatula] (GB:ABE86246.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.72421864713632 5.98959643440719 9.47579477779587e-05 1 6.77857293607495 10.2929387813318 0.72421864713632 0.148015566575562
AT3G12750_at 4.56767129273879 4.87370408243402 5.12301312493956 4.89473882746146 4.54822896071746 5.08702867216987 4.15762438203418 4.37179856712658 3.90080861795552 4.28831318147138 5.21610150450867 4.95436917496421 5.19509594572687 4.99321380064416 4.53252741800618 5.24535987997341 4.73119194265353 5.33979630662841 4.23489322666861 0.228735591215077 0.233615624894453 0.231814476928161 0.226822496906027 0.222737524195374 0.223081126358413 0.221418892825486 0.225113056520468 0.236832004914038 0.223797482062589 0.229346792022765 0.226753119398663 0.233870397785526 0.235869751623061 0.224549278804369 0.221418892825486 0.235531335129005 0.222707118822992 0.239365098627272 3 3|0 -|/ 4052021 4052621 4052382 4051658 4053208 - gene protein_coding_gene FALSE TRUE AT3G12750.1 ZIP1 (ZINC TRANSPORTER 1 PRECURSOR); zinc ion transporter A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. Identical to Zinc transporter 1 precursor (ZRT/IRT-like protein 1) (ZIP1) [Arabidopsis Thaliana] (GB:O81123); similar to ZIP5 (ZINC TRANSPORTER 5 PRECURSOR), cation transporter [Arabidopsis thaliana] (TAIR:AT1G05300.1); similar to metal transport protein [Medicago truncatula] (GB:AAR08412.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.652585734922519 5.98933384395926 9.47934268331747e-05 1 6.77827367966003 9.28662365803775 0.652585734922519 0.120137949566582
AT2G03820_at 6.93105446278742 7.1910183640796 6.65582227495662 6.54883773992876 6.91664669545362 6.76477456707448 7.2795709817021 7.42584773519909 7.11697884089952 6.79082673573897 6.72152679025071 6.3132500886807 6.32288923268077 6.39800091990573 6.31071146208211 6.22573813374481 6.31679582492234 6.51337042583571 7.00602075016154 0.180320076858137 0.187221003466626 0.179009389068413 0.178814317471791 0.179068274183233 0.182592626990687 0.176709933637834 0.17439581162116 0.194324797807028 0.184310052363870 0.180429302980434 0.17439581162116 0.180840559393543 0.181041497500087 0.176127948086676 0.177601261833166 0.186805775474765 0.176151113346155 0.188569273081822 2 2 - 1165152 1165707 1165498.091 1164954 1167026 - gene protein_coding_gene FALSE TRUE AT2G03820.1 nonsense-mediated mRNA decay NMD3 family protein similar to NMD3 family, putative [Medicago truncatula] (GB:ABE90145.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain NMD3; (InterPro:IPR007064) -0.533171324546244 -5.98895025482821 9.4845279725399e-05 1 6.77783650760582 13.6449770036625 -0.533171324546244 0.0608131306937873
AT2G22425_at 8.93013594149128 9.29933576081322 9.38800448978478 9.43999684355482 9.46967708938924 9.14541749149152 8.24275276910565 8.4928218395629 8.96954564412938 8.5297137276265 9.55210262612812 9.5142456566491 9.24145222432027 9.41315251527546 9.37107736024308 9.2013005509087 8.79348084094865 8.89708268327177 8.5208001606711 0.137942465099494 0.129866131953582 0.136795226920901 0.137237880996569 0.13132075231706 0.138214315623379 0.138720014745894 0.136449441293235 0.143747942055482 0.135504817473669 0.136908103811788 0.130883831886260 0.130350003851625 0.132923011857280 0.135514325250918 0.130115015202859 0.137094604837061 0.139959878196672 0.136333241868885 2 2 + 9522182 9522366 9522281.818 9522016 9522615 + gene protein_coding_gene FALSE TRUE AT2G22425.1|AT2G22425.2 signal peptidase Identical to Probable signal peptidase complex subunit 1 (EC 3.4.-.-) (Microsomal signal peptidase 12 kDa subunit) (SPase 12 kDa subunit) [Arabidopsis Thaliana] (GB:Q944J0;GB:Q7G9Y5); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT4G40042.1); similar to Microsomal signal peptidase 12 kDa subunit family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98316.2); similar to Os12g0438900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066693.1); contains InterPro domain Microsomal signal peptidase 12 kDa subunit; (InterPro:IPR009542) 0.597073015277158 5.98797373036401 9.49774212770948e-05 1 6.77672345780884 18.0116877704961 0.597073015277158 0.0958370631981522
AT4G28080_at 10.5451107425164 10.5484569008024 10.0619907575588 10.1968871153573 10.3745622227838 10.1720265942205 11.2473447391518 11.1750820012784 11.1862309787476 11.147488742363 10.6758559880024 10.9957922011460 10.7952222296666 10.7495156794256 11.0279186916433 10.9575515325255 10.5590650065179 10.8078060622972 11.1598545639674 0.0632183160050621 0.0617835486755736 0.0655353565003738 0.0643100150036954 0.0641950371140236 0.0687801421380279 0.0629810858940442 0.0634266086605225 0.0699483782541751 0.0630033843107283 0.0622500860714484 0.0628192202417309 0.0625547620908469 0.0632710004094721 0.0647578879780677 0.0617170624934337 0.0693922641738157 0.0658123648879896 0.0617170624934337 4 4 - 13949232 13949571 13949400.091 13948609 13957424 - gene protein_coding_gene FALSE TRUE AT4G28080.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G15290.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G01320.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to H0811D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86110.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.510532880623377 -5.98532944176121 9.53362294147646e-05 1 6.773708639914 21.5329904770066 -0.510532880623377 0.0439336708507608
AT2G47920_at 1.50844943162161 1.24648539747619 1.14528001185161 1.38339601462951 1.52262338226199 1.38183545678205 1.76552228754859 1.83035146947074 1.38040262068055 2.04275213933797 0.701864265431509 0.946244987408697 0.80353656876533 1.18114668672489 1.35119738620045 1.04202037345986 1.38612714507203 1.1328671617433 2.34655672648078 0.201931339254149 0.203648669079350 0.208128952856128 0.205217222732770 0.200074775850628 0.201512750611205 0.201748449590871 0.199947363274476 0.215081911113854 0.202747652279745 0.205799939423545 0.198854567025797 0.216096744864698 0.199142671450977 0.206398772502591 0.203371767136264 0.201100211480041 0.206406723424889 0.205586567644521 2 2 + 19623283 19623807 19623508.273 19622847 19623974 + gene protein_coding_gene FALSE TRUE AT2G47920.1 kinase interacting family protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03470.2); similar to Os07g0666600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060570.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99825.1); similar to Os12g0605200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067222.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.542265010231834 -5.98456131577165 9.54407288117107e-05 1 6.77283265124839 2.96867429846388 -0.542265010231834 0.0668780599119766
AT1G27030_at 4.79873121508204 5.23475890480383 2.73287727448923 2.45780398821950 2.85129429439659 3.15192317892559 4.3256633719605 4.39974805852262 1.99523927931129 3.64808232694745 3.71928430260948 5.17380126235696 3.48961883546887 3.4959283372678 4.80529465685546 3.24351341383051 3.12764099438256 4.03596991902011 4.02853683507814 0.304814082704411 0.305465289634846 0.294372750096678 0.293253301228302 0.288279442034532 0.301850959487847 0.294123230733541 0.293901744023145 0.295392462373655 0.292414035163015 0.286497690865832 0.292969527321475 0.287071485094089 0.290081730881479 0.290564374206467 0.286497690865832 0.298369792215179 0.293153065383344 0.293441186507421 1 1 + 9382382 9383673 9383154.091 9381790 9383971 + gene protein_coding_gene FALSE TRUE AT1G27030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05517.1); similar to Os10g0463800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064789.1); contains domain GatB/YqeY domain (SSF89095) -0.614411026069755 -5.98250305681549 9.57213471579585e-05 1 6.77048485564514 7.29926717530145 -0.614411026069755 0.104070724765364
AT1G62990_at 2.15943592045509 2.46976864629789 2.99733945715255 3.30027320911122 2.58234617954704 2.58830474564688 1.98630387347907 2.42968297518089 1.54628166477136 1.61054068927383 1.91232447178604 2.45299453823467 2.24791050833062 2.39171098350453 2.23927171495832 2.42301130333944 2.91319575383305 2.64887590960908 2.14131375614972 0.210811899228019 0.21225923047901 0.212471367240420 0.228011171577230 0.215538233488888 0.224885266573819 0.211930340829823 0.210805948853824 0.210387380757275 0.219935764126494 0.211880520578164 0.215853037142701 0.216073646684628 0.215163702367905 0.223372998262561 0.210387380757275 0.21601118735468 0.210387380757275 0.221981094361872 1 1|0 +|/ 23342357 23343977 23343113.778 23341030 23344353 + gene protein_coding_gene FALSE TRUE AT1G62990.1 KNAT7 (Knotted-like Arabidopsis thaliana); DNA binding / transcription factor Encodes a homeodomain transcription factor of the Knotted family. May be involved in secondary cell wall biosynthesis.Mutants have moderately irregular xylem development similar to KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana] (TAIR:AT5G25220.2); similar to Homeobox protein HD1 (GB:P46606); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain KNOX1; (InterPro:IPR005540) 0.621692285947842 5.98188834375241 9.58053264598472e-05 1 6.76978352659077 4.64903550986605 0.621692285947842 0.107335164299022
AT2G28810_at 6.81537390916712 6.78258377708162 7.45635690989107 7.05459761063292 8.21914291913347 7.49156081115425 6.82214221479115 6.52786889048095 5.29149745411168 5.48517397770385 5.9239521155144 6.4628268884433 5.79989363621191 5.76483564278906 6.10275637347652 6.22364540173837 6.16973582417994 6.18469323367444 5.50229397731091 0.216701337333165 0.219238076209949 0.220160760262900 0.222018591569526 0.21804543343925 0.223042989791719 0.216815156256781 0.219420059483577 0.238014709300365 0.223206235598014 0.219316482508716 0.215967596853331 0.224204099148995 0.228280756957080 0.224165148222171 0.214830913995309 0.223227365259703 0.226533597450329 0.227315046043145 2 2 + 12371523 12372113 12371785.455 12370707 12372454 + gene protein_coding_gene FALSE TRUE AT2G28810.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF2.2 (AtDOF2.2) (DOF2.2) [Arabidopsis Thaliana] (GB:Q9ZV33); similar to OBP2 (OBF BINDING PROTEIN 2), DNA binding [Arabidopsis thaliana] (TAIR:AT1G07640.3); similar to Dof zinc finger protein [Solanum tuberosum] (GB:CAB89831.1); similar to Os03g0821200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051725.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.735571475642031 5.9788259688418 9.6224867787022e-05 1 6.76628866218836 12.8988854765644 0.735571475642031 0.152686615381344
AT4G29060_at 10.1615136995248 10.2007071256903 9.61512402055687 9.72358187931273 9.91720640821645 9.71524904759505 10.6571371497876 10.5828741931433 10.3033491347083 10.6822016803744 10.0042207652385 10.5930612388217 9.88721247236146 9.74491881939936 10.7857122880358 10.2320916905987 9.92816651827778 10.0210320179618 10.5375319969819 0.104323712859998 0.102291520164686 0.107040262624484 0.105907862427179 0.103618241017068 0.111542494381769 0.106321187852488 0.104690959650241 0.109552972791011 0.105480717661717 0.112519308534492 0.106498874938571 0.103725954517998 0.107203793119555 0.106012626743579 0.107145747838494 0.115111298090203 0.106143273837643 0.103866524385814 4 4 + 14320648 14321246 14320927.273 14317262 14321573 + gene protein_coding_gene FALSE TRUE AT4G29060.1|AT4G29060.2 EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1); similar to chloroplast polyprotein of elongation factor Ts precursor [Chlamydomonas reinhardtii] (GB:AAU93598.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1); similar to translation elongation factor Ts [Prochlorococcus marinus str. MIT 9312] (GB:YP_397258.1); similar to elongation factor Ts [Prochlorococcus marinus subsp. pastoris str. CCMP1986] (GB:NP_892872.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.507954998733769 -5.97707889349134 9.64650930839917e-05 1 6.7642941168552 20.4002973139909 -0.507954998733769 0.0422483798758945
AT4G35320_at 3.00945942994561 3.08740067461503 1.97906288986636 2.21334174629267 2.68256407161752 2.86822321031558 6.20406824506622 6.59649192963665 5.27854281577090 5.25388236454782 7.5999696120265 6.62362186403116 6.75607206154337 6.84925120610401 6.73502411550066 5.67967547663073 4.71558673884091 6.2685605223209 5.2696627972712 0.313792910629921 0.305143978097346 0.345139855870364 0.317671813978535 0.307526888900843 0.309961528218477 0.295164207112934 0.298215159631602 0.309456339593917 0.294189564431659 0.294189564431659 0.296940495992644 0.299301536627494 0.294189564431659 0.294189564431659 0.295919700790754 0.296451171530197 0.296901459507994 0.294189564431659 4 4 - 16806176 16806562 16806342.364 16805874 16806660 - gene protein_coding_gene FALSE TRUE AT4G35320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17300.1); similar to Os02g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047925.1); similar to Os08g0511400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062213.1); contains domain N-terminal domain of cbl (N-cbl) (SSF47668) -0.576224774932351 -5.97129938722632 9.72643560931913e-05 1 6.75769214252677 9.41549295408016 -0.576224774932351 0.0864281292839401
AT3G55430_at 7.15917570295338 7.51156594392566 7.88289300183039 8.11990055174986 8.24008563205677 8.22293920655908 7.46832227993947 7.92272771415014 7.93643954147914 7.50812004260624 8.92827428377073 8.43748174923694 8.71156524086576 8.64316004154669 8.5018261182 8.21524391414707 8.1818325424605 8.37975341827097 8.13074644376841 0.150415317145858 0.139211087377974 0.143439538324044 0.141590979734774 0.145009742280504 0.146254986025292 0.146140886086031 0.140796452448759 0.154066047338004 0.144034287345878 0.146012014694383 0.140524643456444 0.145616535005102 0.151403586758977 0.144055316259797 0.141777981026436 0.151460105709881 0.148618470280730 0.144313929693865 3 3 - 20560845 20561324 20561057.364 20560576 20563192 - gene protein_coding_gene FALSE TRUE AT3G55430.1 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G39640.1); similar to beta-1,3 glucanase [Pisum sativum] (GB:CAB85903.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.621231754375634 5.97005643841015 9.74371686375042e-05 1 6.756271547543 15.9951150072357 0.621231754375634 0.107674183385221
AT1G68820_at 6.75997837416065 7.00614197050431 7.25495954144543 7.30069746329224 7.8198735370609 7.29771110073688 6.43675105902736 6.24603817122635 5.40609956277449 5.96774698606701 6.20479865058171 6.24801447200651 6.22622874177589 5.89477489995423 6.1253668761296 5.93845872893037 6.25678193479834 6.04532561439617 5.69931237768977 0.231359716033965 0.220379801584539 0.225573409402508 0.220336006207827 0.231298423277817 0.226979972548206 0.233801577740762 0.228354695521809 0.231855086543785 0.218502430093686 0.218502430093686 0.224038134184600 0.218502430093686 0.234031256344358 0.221573190720914 0.225708407254504 0.256981721070989 0.22709267344442 0.218502430093686 1 0|1 /|+ 25871459 25872411 25871863.778 25869323 25872648 + gene protein_coding_gene FALSE TRUE AT1G68820.1 membrane protein, putative similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18470.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90658.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.616249390607686 5.96914087608372 9.7564672847346e-05 1 6.75522495691449 12.9195297598478 0.616249390607686 0.105508504854675
AT3G14120_at 4.04189104561163 4.1505725439498 3.50535676284254 3.65737774659368 3.69622839285175 3.20981154721003 4.59056339717285 4.0828194368092 3.40440029470134 3.85031114057074 3.03889888080169 3.14881703099473 3.12134020004197 2.63830661811682 3.50372177793538 3.29535172034611 3.21759868032408 2.70913937151537 3.88646651771509 0.219535912550377 0.216837932441453 0.216309072517178 0.212914435234223 0.210345705486908 0.218306584967176 0.216507649169476 0.221756333243581 0.23542288846207 0.208466282533393 0.208466282533393 0.212236403770669 0.226454032650275 0.220203179398858 0.213862358565321 0.212007543650406 0.222717055295726 0.214443950742141 0.211268141298614 3 3|0 +|/ 4684448 4685416 4684784.444 4677820 4685673 + gene protein_coding_gene FALSE TRUE AT3G14120.1|AT3G14120.2 similar to Nuclear pore complex, rNup107 component (sc Nup84) (ISS) [Ostreococcus tauri] (GB:CAL50524.1); similar to Os11g0643700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068360.1); contains InterPro domain Nuclear pore protein 84/107; (InterPro:IPR007252) -0.664423596415454 -5.96825856715028 9.76877146148527e-05 1 6.75421623958195 7.26576399379947 -0.664423596415454 0.125905721102164
AT3G48090_at 7.87717579499331 8.2315142389542 8.94496747952086 8.95276186782007 7.43438228996026 6.40785570216685 5.39197196120239 5.10736968644244 5.04787304777137 5.48170894922746 5.79338813192966 6.51282743674418 4.99174731788866 5.76944715726887 6.01977594710363 5.94647474783687 5.2279462330416 5.77900182866 5.46481831030687 0.24715504708817 0.2624651593239 0.259993261283936 0.257548131941045 0.25173962282918 0.256899443212512 0.245045854458537 0.256745639063702 0.260021994846351 0.247019382739053 0.250007016577682 0.249319001792729 0.247350134010168 0.256231654007182 0.244822338345262 0.244822338345262 0.260121220075772 0.254263740193559 0.252569496566409 3 3 - 17766562 17767111 17766865.727 17766359 17768742 - gene protein_coding_gene FALSE TRUE AT3G48090.1|AT3G48090.2 EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance protein-related [Arabidopsis thaliana] (TAIR:AT3G48080.1); similar to EDS1 [Lycopersicon esculentum] (GB:AAX73302.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.853296622713103 5.9681771154464 9.76990817532015e-05 1 6.7541231114102 12.8367713122131 0.853296622713103 0.194282034436473
AT3G06420_at 4.36572235449157 4.91993863268818 5.59618732838162 5.48403142189117 6.71038829118975 5.90981332734232 5.17712342384271 4.40091244619849 4.73923615170348 4.664159657583 5.5353505060117 5.39641298770787 4.92633655073337 5.7804404069788 5.24661713669444 5.55728239309581 5.19250061742586 5.24489225110295 4.78325818447979 0.228172516818527 0.220945970347136 0.228565612355016 0.224995536813612 0.226825312388683 0.247024369358501 0.221137016380072 0.224298303868237 0.236705490368028 0.228977741753427 0.224073600547739 0.223861400100107 0.227129787306001 0.224770093143353 0.220945970347136 0.220945970347136 0.229049997920736 0.23110113751243 0.222169933594441 3 3|0 -|/ 1955231 1956254 1955515.889 1954996 1956403 - gene protein_coding_gene FALSE TRUE AT3G06420.1 ATG8H (AUTOPHAGY 8H); microtubule binding similar to APG8H (autophagy 8H), microtubule binding [Arabidopsis thaliana] (TAIR:AT3G15580.1); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE82404.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.920137659763037 5.9674892976282 9.77951277231154e-05 1 6.75333664542405 10.3649465386570 0.920137659763037 0.216363899596928
AT3G52370_at 3.68081968748039 3.43627588579883 3.14424260139105 3.01720530451929 2.88258101816674 3.07729645064746 6.16658142342281 6.85276308222785 4.84683506288054 5.45923849504504 5.94475051536589 6.94389665755836 5.3663967110158 6.3430214351671 6.21608924669325 5.44887105518744 4.43188222442021 5.48975860020054 5.0838956946204 0.235162018178069 0.224237426040505 0.235918893085165 0.238928199013413 0.243708559227497 0.246043148927092 0.229972641653838 0.2338074754115 0.229849417166328 0.223818763390945 0.222622717567476 0.226857194234618 0.225445203946833 0.230983277600657 0.225047252918385 0.222622717567476 0.225759599030432 0.225606238732412 0.226121629502219 3 3 + 19429242 19429727 19429480.727 19428468 19430760 + gene protein_coding_gene FALSE TRUE AT3G52370.1 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein Identical to Fasciclin-like arabinogalactan protein 15 precursor (FLA15) [Arabidopsis Thaliana] (GB:Q9FT45); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11700.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06390.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35860.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71191.1); similar to Os03g0788600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051504.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.680342560599459 -5.96628218094511 9.79639316461046e-05 1 6.75195620115544 9.48375720998167 -0.680342560599459 0.132327368024219
AT1G07650_at 9.16025410737439 9.1023947702051 9.18774267765169 8.94863025851566 9.42132714663512 9.12476097554697 7.32974060405154 7.03632948910718 8.55032695120338 7.96615250578277 8.73107581554746 8.70787134345444 8.0435994781629 8.70094312256084 8.37493811732348 8.13761062436442 8.13612764202297 8.83219210263463 8.47446107060332 0.142071328933127 0.142215083986582 0.146279429272686 0.146219124739222 0.140732371982965 0.146673372093305 0.162695553887596 0.153391550467114 0.146466964801442 0.148960156720762 0.140732371982965 0.140732371982965 0.145837509376528 0.149070938395945 0.144393594561495 0.140732371982965 0.156878259688001 0.148395422744158 0.142357865957040 1 1 - 2359841 2360517 2360085.909 2359546 2366558 - gene protein_coding_gene FALSE TRUE AT1G07650.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53440.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14840.2); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.570583396732606 5.96548317613894 9.80758360121246e-05 1 6.7510423282151 17.0580766486136 0.570583396732606 0.0838135070631392
AT1G80440_at 11.3090274781685 11.6233974367812 11.7688997517372 12.0172958969027 12.4412999816628 12.2535206223302 10.9116927549692 11.1034893168602 10.8015436307706 10.9244256329951 10.8641409038172 10.7728830815612 11.5414563122658 11.2727776351264 10.2634788471220 11.4780580146589 11.7558497038583 11.1964707008330 10.9353590718388 0.0760858435380717 0.0755590324325421 0.0801251285232362 0.0799790589043139 0.076033485839826 0.0840080430721185 0.0775178659046562 0.0784164311271882 0.0885820430168415 0.0787110869153035 0.0807463951424627 0.0754579858794827 0.076928791712754 0.0784325234218751 0.0776965317417788 0.0750771109139185 0.0836435201327489 0.0822301449719096 0.0774289691038373 1 1 + 30247182 30247684 30247422.727 30246499 30247963 + gene protein_coding_gene FALSE TRUE AT1G80440.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G15670.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.569691135583629 5.96329155424779 9.83834839503582e-05 1 6.74853505517539 22.6937023274799 0.569691135583629 0.0834575964358108
AT2G15310_at 7.18008237363283 7.25912495562563 7.90068389337502 8.09485708291314 7.9526004555661 8.17538965669487 6.96258843243028 7.17579701670309 4.84985173777027 5.3158040774795 5.02597582021185 4.22741777729991 5.32933818216056 4.96614856475093 4.17786907042337 5.76408388298691 6.35537204793058 5.14902576864698 4.64818825731418 0.224291214054657 0.219058714983571 0.219561895870195 0.218780515746758 0.226108084599094 0.221721989515277 0.223093335288406 0.222804185579221 0.220437441993431 0.218510158400456 0.218209203122126 0.219659013198141 0.223746233527636 0.220234197910770 0.218697563119 0.217720941306657 0.225750357601797 0.221878392439590 0.221649174507979 2 2|0 +|/ 6661113 6662236 6661864.1 6660873 6662583 + gene protein_coding_gene FALSE TRUE AT2G15310.1 ATARFB1A (ADP-ribosylation factor B1A); GTP binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. Identical to Probable ADP-ribosylation factor At2g15310 [Arabidopsis Thaliana] (GB:Q9SHU5); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G10630.1); similar to ATARFA1E (ADP-ribosylation factor A1E), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT3G62290.1); similar to ATARFA1B (ADP-ribosylation factor A1B), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT5G14670.1); similar to ADP-ribosylation factor 1 (GB:P51821); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.536470221326362 5.96194098454165 9.85735824391647e-05 1 6.7469895483484 12.6188164401123 0.536470221326362 0.0645296420760766
AT3G48185_at 1.81691533760467 2.24824928397264 2.0150901072565 2.67925933015317 3.07184936474957 2.96710920818023 1.73593126232979 2.36797621803009 2.15883343625978 2.16660570259970 3.18204118608782 2.88704747635044 2.85863014099139 3.18925553545534 3.26467416968327 3.35314820779452 2.88869468063148 3.08256316331080 2.06550440650144 0.230525391286682 0.230171103652652 0.231721218478130 0.232259885806835 0.236591092529329 0.24684213761497 0.230171103652652 0.230171103652652 0.237179599356223 0.234398035867052 0.242069137417098 0.230171103652652 0.235267797899389 0.241937028469793 0.242966316341147 0.233535107697903 0.235247019791167 0.236541491451665 0.23736350415933 3 3 - 17804046 17804263 17804152.455 17803996 17804528 - gene protein_coding_gene FALSE TRUE AT3G48185.1 unknown protein 0.799500641009195 5.96088252872428 9.87228386807701e-05 1 6.74577809457348 4.9720831816138 0.799500641009195 0.1762798596759
AT1G53090_at 7.53450038409824 7.58076194230855 7.62853116838281 7.59212796999071 7.71230945897827 7.6208584731003 8.70530511284137 8.80270583237286 8.07312293811791 8.31431790115696 7.35976154625773 7.50739004840153 7.94212013728615 7.78511499041247 7.32383383473077 8.18553840257007 8.1907213028484 7.61921936573434 8.22503914132187 0.153241830710274 0.143016068689271 0.148363826312298 0.143876386056121 0.145956639576391 0.150114082362264 0.147441441421333 0.152287819691389 0.156936096192658 0.145678106879199 0.152082961055919 0.148014071805502 0.148055044042467 0.154924906513716 0.159239584385684 0.146230536170517 0.155393837074710 0.152154491171180 0.147092747583322 1 1 + 19789475 19790317 19789957.091 19787020 19790570 + gene protein_coding_gene FALSE TRUE AT1G53090.1|AT1G53090.2 SPA4 (SPA1-RELATED 4); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. similar to SPA3 (SPA1-RELATED 3), signal transducer [Arabidopsis thaliana] (TAIR:AT3G15354.1); similar to Os05g0571000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056370.1); similar to Os01g0725800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044115.1); similar to Cop1 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87451.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.491154545147146 -5.95579087679633 9.94442078421473e-05 1 6.73994770584184 15.8688237662904 -0.491154545147146 0.0252656890950551
AT4G40070_at 2.93263501376552 2.88325427905651 3.14497185704913 3.19058310026805 3.1982614026857 3.34172293321249 2.36197028363935 2.7725691825616 3.19817604834444 3.15049676535683 3.93941262613768 3.60443788928317 3.43220296102599 3.36597168436334 4.06820402341611 3.5763448261296 3.90107787180372 4.16872670799145 3.03520059867665 0.212243313331536 0.207565892371209 0.211613119255047 0.21450379099703 0.212347261461623 0.223409250695754 0.208706412228387 0.206740681955009 0.211860786274611 0.206728260833439 0.210852943852546 0.206728260833439 0.215668558229564 0.209958933571319 0.222288900479061 0.209582301781804 0.20979246067599 0.213729883932719 0.209871540144966 4 4 + 18577123 18577449 18577288 18576412 18577768 + gene protein_coding_gene FALSE TRUE AT4G40070.1 protein binding / zinc ion binding Identical to RING-H2 finger protein ATL4O precursor (ATL4O) [Arabidopsis Thaliana] (GB:Q8W571;GB:Q9SMQ0); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G05200.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD32383.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.555183576595502 5.95271661730261 9.98824816269035e-05 1 6.73642520566505 6.42074857047722 0.555183576595502 0.0761620454737227
AT4G08250_at 2.28305106093121 2.16671803024717 2.00286084070948 1.90554478812457 1.57895623959971 1.9922831815915 2.71753125328035 3.00452781515802 2.7712544376149 2.80907880684988 2.68115506964369 2.52924686550681 1.95547170344730 2.31475159443595 2.33046600533149 2.46105739107618 1.96665822878448 2.19884326533979 2.81511203070691 0.201584912337163 0.199212523142004 0.198306917150042 0.206030778319539 0.191299816851633 0.194863961455589 0.194903409545106 0.197943796804034 0.204327585856962 0.193781579899324 0.201653355752978 0.197437449081267 0.205192267580020 0.196773700010815 0.200233777119849 0.191299816851633 0.202266172919525 0.203241379451971 0.199294926309905 4 4 + 5197726 5198174 5197935.727 5196784 5198235 + gene protein_coding_gene FALSE TRUE AT4G08250.1 scarecrow transcription factor family protein similar to SCR (SCARECROW), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54220.1); similar to Nodulation signaling pathway 2 protein (GB:Q5NE24); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.583410635171361 -5.95226351713928 9.99472507970806e-05 1 6.73590590120266 4.75802816312339 -0.583410635171361 0.090950059551995
AT2G18260_at 2.59696197457735 2.58920153886729 2.17169156355087 1.90719020734936 2.39499484863463 1.82989614207162 3.22865990013396 3.61523753752381 2.77712458248232 2.85403311203935 2.23467299612651 2.1363359004947 2.31933900904265 2.78139540886595 2.20380302805545 2.36927732708763 2.80842979266218 2.29000525901877 2.7440747611046 0.190617553120937 0.194156261140301 0.188197699044265 0.196567774573033 0.188197699044265 0.201519661832468 0.202378028038509 0.195000380975448 0.197517838062743 0.196400167405153 0.188244262240271 0.192384811007939 0.188197699044265 0.193594878843768 0.190497855442098 0.190366035053479 0.205916012203163 0.189056362532357 0.191676799660578 2 2 + 7949637 7950053 7949812.1 7949357 7950470 + gene protein_coding_gene FALSE TRUE AT2G18260.1 SYP112 (syntaxin 112); t-SNARE member of SYP11 Gene Family Identical to Putative syntaxin-112 (AtSYP112) (SYP112) [Arabidopsis Thaliana] (GB:Q9ZPV9); similar to SYP111 (syntaxin 111), t-SNARE [Arabidopsis thaliana] (TAIR:AT1G08560.1); similar to Knolle [Capsicum annuum] (GB:CAB56195.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) -0.665204429540087 -5.95029041689993 0.000100229822053380 1 6.73364408305903 5.13405496011094 -0.665204429540087 0.127027311197294
AT2G25100_at 4.54557952822684 4.87895117581744 3.55783934585663 4.01542796068316 4.06236877619756 3.50551116052943 5.29463905346661 5.50818308734022 4.35568015003821 4.42521224164901 4.73654066051829 5.1912595453767 4.22523771126931 4.40151641276053 4.66936223428293 4.28609529276291 3.43434592394633 3.9680029988612 4.72155494583517 0.22434262206055 0.225456501406430 0.23009871946486 0.221715862263588 0.222532197153363 0.228544049418239 0.227563799032921 0.221427111420379 0.236687825469982 0.220251222402900 0.220251222402900 0.222871839847254 0.222460468688728 0.230077779668850 0.220251222402900 0.227495729496762 0.224478905700191 0.230069450727576 0.220251222402900 2 0|2 /|- 10686852 10687540 10687243.444 10686603 10689077 - gene protein_coding_gene FALSE TRUE AT2G25100.1|AT2G25100.2 ribonuclease HII family protein Identical to Ribonuclease H2 subunit A (EC 3.1.26.4) (RNase H2 subunit A) (Ribonuclease HI subunit A) (Ribonuclease HI large subunit) (RNase HI large subunit) [Arabidopsis Thaliana] (GB:Q9SEZ6;GB:Q8GYG9;GB:Q8LA95); similar to ribonuclease H2, large subunit [Mus musculus] (GB:NP_081463.1); similar to Os11g0153900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065783.1); contains InterPro domain Ribonuclease HII/HIII; (InterPro:IPR001352); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease HII; (InterPro:IPR004649) -0.704161041048973 -5.94898805749063 0.000100416802375202 1 6.73215077874889 8.85349294933794 -0.704161041048973 0.142306865878239
AT3G05220_at 9.94814070742472 9.83627957606581 9.62464924708857 9.29066017997042 10.1674626055731 9.83102113039223 8.54923597875055 8.62233840836925 9.58976407325307 9.07077882399084 10.0987912062239 10.1756977305797 10.1826063592197 10.1753573440763 9.92668165398708 9.95767497412482 9.40087826863567 9.9070525838356 9.31180577924317 0.0838518005239119 0.0828573964565327 0.0879248445982596 0.0867569610326925 0.0858262442075153 0.0864291138151082 0.0886127919683174 0.0882104476749818 0.082980883608672 0.0889702303606131 0.0825184043718764 0.0846724090541026 0.0836893779563987 0.0873919059335526 0.0852247859427624 0.0829348512840807 0.0942327685013195 0.0851237090385977 0.0860614725683414 3 3 + 1490614 1491111 1490884.636 1488601 1491326 + gene protein_coding_gene FALSE TRUE AT3G05220.1|AT3G05220.2 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE90127.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160)|similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE90127.1); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160) 0.571712956346575 5.94860487061411 0.000100471887544251 1 6.73171135437339 19.1348278494949 0.571712956346575 0.0852368341596992
AT4G28400_at 9.78170738414612 9.85818465118889 10.6220180835274 10.5447223834965 10.4101561820842 10.2687046329291 9.34177432825137 9.1095235187252 8.89495361433187 9.09476395969837 9.11593468643992 8.91163659105871 9.14568198228814 9.26733548764966 8.54397381687038 9.21454524885834 9.08917263252587 8.99779338178982 8.84052961292341 0.110550839590169 0.110681316210641 0.116221563827939 0.113135474907310 0.110287775667724 0.119268751891703 0.105651068979525 0.114249182447093 0.134751210062239 0.114752674903037 0.116442083021466 0.112015937978315 0.109042352761936 0.105627240915012 0.114888745416262 0.105413126227304 0.124027249812602 0.127674447951928 0.107624471517644 4 4 + 14049411 14049845 14049585.727 14048300 14050341 + gene protein_coding_gene FALSE TRUE AT4G28400.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G20630.1); similar to protein phosphatase 2C [Lycopersicon esculentum] (GB:AAS86762.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.515473174690985 5.94805939023489 0.000100550358916510 1 6.73108577340005 18.9816863742534 0.515473174690985 0.0506823834852832
AT4G13220_at 6.6674153564829 7.13135522469199 6.1135110953947 5.93371010865347 7.0747231037 6.53592646037706 7.81501392465797 7.9285292591691 7.40053338256298 7.17027966331567 6.78913960875244 7.29296909732053 7.03002782969648 6.98939064177467 6.3790806176414 7.03410370973318 6.64598391959644 6.51549438327151 7.02996439319996 0.222626795163963 0.219213659537685 0.230058472152165 0.250238553491366 0.221906370114952 0.224890782281093 0.215331570118801 0.221203369071666 0.242863387197648 0.217078621266914 0.235166248520943 0.213543361208339 0.213543361208339 0.224828975455655 0.225467557001001 0.213543361208339 0.228650146614714 0.230659847062918 0.220304612932917 4 4|0 -|/ 7674660 7675241 7674988.222 7674284 7675309 - gene protein_coding_gene FALSE TRUE AT4G13220.1 similar to Os12g0276100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066563.1) -0.668423084802691 -5.94784224248999 0.000100581615420857 1 6.73083672424109 13.9174145028073 -0.668423084802691 0.128428965926742
AT1G13930_at 13.9335700830088 14.0502012540778 14.3464421433033 14.3847983711546 14.1609987578517 14.3444738637643 13.9399901001973 14.0866358740508 13.4532007464335 13.7194378150130 14.3207765710034 14.1594876988549 14.4246567519116 14.2937299952023 14.0793570092367 14.0263672075057 14.4663992125467 14.3237369384646 13.475764199961 0.0562774039283116 0.0548645862251486 0.054043367949546 0.0538693767393342 0.0549103852928373 0.0544039941714607 0.0538477250098704 0.0555885005442326 0.0535791762895978 0.055160442352342 0.0549587850401961 0.054950272012397 0.0540697355480906 0.0540586841113459 0.0548216540170896 0.0543275832161314 0.0576118235423642 0.0546401231304204 0.0558067056762357 1 1 + 4761088 4761496 4761320.273 4761039 4761722 + gene protein_coding_gene FALSE TRUE AT1G13930.1 similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562) 0.509462646069858 5.946782980983 0.000100734235527403 1 6.72962172673331 28.0615295610393 0.509462646069858 0.0458650780943955
AT3G06170_at 9.25191185634046 9.19018337586346 9.45251623512862 9.5570863389071 9.8092072950394 9.8322269661674 8.9943327470184 9.04496400882014 8.4640011713864 8.66270515713524 8.9360680989672 8.70950478646233 9.2339446111592 9.05889403002285 8.69007211799287 9.08014888886559 9.32067799924822 9.04233440673765 8.59514036871997 0.138010363483217 0.138909280424176 0.136525715704081 0.143416255710911 0.138246877209719 0.137800473789266 0.136614109157471 0.138950106512573 0.140960758048128 0.147133733513865 0.136214656135838 0.134745447086714 0.133409886330785 0.144513462937971 0.135867715673924 0.133067479712226 0.149018649814465 0.139455715825544 0.140129187990587 3 3|0 +|/ 1869077 1869694 1869385.8 1867421 1869954 + gene protein_coding_gene FALSE TRUE AT3G06170.1 TMS membrane family protein / tumour differentially expressed (TDE) family protein similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT1G16180.1); similar to Os03g0454100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050476.1); similar to TMS membrane family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97020.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) 0.488708965075739 5.94288303005048 0.000101298280476226 1 6.72514669401148 18.1830058611669 0.488708965075739 0.0231134842454428
AT3G07930_at 5.58376529141904 5.56363944659303 6.17041642262529 6.3419132283605 6.6892789252064 6.24881342233515 5.89086434503956 5.38746728794849 4.47775643590348 4.45891664593424 5.0341423860257 4.85977459337937 5.25168703901302 4.77393558692002 4.4040581927686 4.82946213926537 5.52582642358892 5.00672415045704 4.3391060078612 0.232829946418070 0.237139590241563 0.23445746967665 0.227037126651732 0.224535471433649 0.232597112697231 0.225021201338697 0.222113785103669 0.232727931670086 0.233020865310180 0.22088879191045 0.227017610838350 0.224522622667959 0.252371627365133 0.230785806734584 0.226351193578412 0.236581801364857 0.236214509414091 0.233775689714450 3 3 + 2527270 2527707 2527529.455 2526624 2528639 + gene protein_coding_gene FALSE TRUE AT3G07930.1|AT3G07930.2|AT3G07930.3 HhH-GPD base excision DNA repair family protein similar to Os09g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062549.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257)|similar to Os09g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062549.1); similar to PREDICTED: similar to Methyl-CpG binding domain protein 4 [Strongylocentrotus purpuratus] (GB:XP_783908.2); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.645806512121375 5.94009141538534 0.000101704097658145 1 6.72194179051398 10.6775003014377 0.645806512121375 0.119549921947092
AT3G06450_at 8.01453055178307 7.9916948070769 7.96461133564112 7.86057879248573 7.4079217434975 6.86192669861272 5.05591465450144 4.63599468503234 6.07446107701553 5.51100554598867 5.97514620176125 6.28564200089221 5.10725573443291 6.29175617760284 5.79662774988202 5.54625739360042 5.55717676590379 5.88578433327414 5.23983300392211 0.222741117733735 0.224140124729562 0.224561524035351 0.227716041058620 0.229095343896724 0.228659866660003 0.227650235168356 0.237062296447619 0.231347096007495 0.237356507859298 0.222562766448346 0.222811174837127 0.233776669455733 0.227791774619442 0.222246723105824 0.221651969386896 0.242139763170002 0.227222216022596 0.229462651911300 3 3 - 1976130 1976736 1976494.455 1975965 1980042 - gene protein_coding_gene FALSE TRUE AT3G06450.1 anion exchange family protein Identical to Boron transporter-like protein 1 [Arabidopsis Thaliana] (GB:Q93Z13;GB:Q9SQU8); similar to BOR1 (REQUIRES HIGH BORON 1), anion exchanger [Arabidopsis thaliana] (TAIR:AT2G47160.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G62270.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:ABD78951.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) 0.648249276827044 5.93895137204751 0.000101870324491596 1 6.72063257392634 12.6812161604009 0.648249276827044 0.120616445371281
AT3G57190_at 6.39095325494008 6.27856032708606 6.73753671595698 6.80086117692656 6.95757455246266 6.42001803271026 7.88496459651836 7.77101117619535 6.06766385647158 7.41978857325322 5.39605976028725 5.85628451364728 6.20771425361919 5.80976449955413 5.6637305171596 7.23848321223753 6.57948399036047 6.18221026927052 7.38161937229622 0.199150893227577 0.192069616444838 0.199689261444024 0.193823342110967 0.192069616444838 0.197875814119465 0.202717337763347 0.211375035526242 0.219688536715100 0.198835640261871 0.203267049918249 0.197266712660566 0.193594854488661 0.197136498570539 0.200414688521850 0.194896585839430 0.204161089230853 0.192069616444838 0.194497597184853 3 3 + 21178434 21179116 21178702.909 21177382 21179355 + gene protein_coding_gene FALSE TRUE AT3G57190.1 peptide chain release factor, putative similar to HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109), translation release factor [Arabidopsis thaliana] (TAIR:AT5G36170.1); similar to Class I peptide chain release factor; PCRF [Medicago truncatula] (GB:ABE90269.1); contains InterPro domain PCRF; (InterPro:IPR005139) -0.596007804747096 -5.93828249429295 0.000101967986809521 1 6.7198643337843 13.4417218012782 -0.596007804747096 0.097679286849282
AT1G07240_at 7.95535599735154 7.74858244427749 7.71585089302422 7.71180994106406 8.39767039915302 8.2102766008149 6.58344467123182 7.01035829911453 7.47021134946195 6.93369197190333 7.68827563823208 7.92046488197341 7.6090662945713 7.72080350302886 7.55196460614665 7.64608599996094 7.35636604076727 7.94926146485522 7.23063146366252 0.144653047649215 0.146334850208892 0.160281659121391 0.147755058164266 0.164326909716423 0.149042188140651 0.152023264264067 0.155890457094059 0.152483893467292 0.149543258602199 0.14944475477052 0.148506172066110 0.147244377073508 0.157878578825868 0.151250990978655 0.1458859386989 0.156283025269314 0.147166723394425 0.154357970465203 1 1 + 2224734 2225176 2224915.091 2223690 2225451 + gene protein_coding_gene FALSE TRUE AT1G07240.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G07250.1); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose (GB:2ACW); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.576620532101458 5.93790472991434 0.000102023188040331 1 6.71943041742658 15.1125674801046 0.576620532101458 0.0882652267614862
AT2G34500_at 1.31249904690356 1.24272573513173 2.93911164629937 2.60590400151328 1.47688191013244 1.56710073448268 0.753626970369293 1.11901165418479 0.727987959932639 0.765213887223394 0.748561863607993 0.56348980437335 0.8261340420854 1.05113929224829 0.853059647867074 0.918914729085712 1.02591255921371 1.05159066321999 0.813077215158882 0.223158492317656 0.224243303775664 0.252559707614667 0.245950587303888 0.227735367059459 0.225588332000748 0.223158492317656 0.228538674413406 0.223290231744628 0.232831578151859 0.224821266889592 0.230888908120907 0.225542708672237 0.229168067819972 0.235687731391493 0.229755455156608 0.225154675871926 0.223158492317656 0.224047390901439 2 2 - 14546803 14547336 14547092.091 14546558 14548485 - gene protein_coding_gene FALSE TRUE AT2G34500.1 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1); C-22 sterol desaturase/ oxygen binding Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). similar to CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2), C-22 sterol desaturase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G34490.1); similar to CYP710A4 (cytochrome P450, family 710, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G28860.1); similar to CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G28850.1); similar to sterol C-22 desaturase -like [Oryza sativa (japonica cultivar-group)] (GB:BAA96158.1); similar to cytochrome P450 monooxygenase CYP710A15 [Medicago truncatula] (GB:ABC59097.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.575687179616993 5.93731896855469 0.000102108846133243 1 6.71875753722388 2.45141271870264 0.575687179616993 0.0878226508020375
AT4G37580_at 3.07020762705627 3.01482928420904 3.17408805473735 2.77963630660206 3.97175247210835 3.85793403740450 3.4461938026323 3.19249675148153 3.15776344632834 2.99791886001202 3.97150141276745 4.51373968202331 4.06417318351986 3.73754858254238 3.63440740957745 4.05493690543019 3.78859234383058 3.34875211434152 2.89749830022620 0.196441599615048 0.187619583102693 0.19580702134835 0.187325045888303 0.187771074791525 0.204978605883822 0.187325045888303 0.197304647979889 0.204579398839911 0.193010851853760 0.194074953861259 0.195002787140591 0.188094783901257 0.193904645086634 0.196689090123507 0.190209245138290 0.189691909664418 0.197566021257556 0.194436072349494 4 4 + 17659990 17660522 17660237 17658606 17660869 + gene protein_coding_gene FALSE TRUE AT4G37580.1 HLS1 (HOOKLESS 1); N-acetyltransferase involved in apical hook development. putative N-acetyltransferase similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G23060.1); similar to putative N-acetyltransferase hookless1 [Brassica napus] (GB:CAC80824.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.568200218383424 5.93552718212985 0.000102371342632767 1 6.71669888843789 6.76685895358373 0.568200218383424 0.0840653481782363
AT4G02860_at 8.92033913434597 9.17137086124404 9.3926307337184 9.39615290627063 9.98563337695812 9.49735819721522 9.52003034971543 9.33017306999896 7.81273836680439 8.88275007804734 9.2724244145209 9.65506139157413 9.4458800266154 9.49938020906094 9.4234686331595 9.19076672374189 9.00803798080127 9.21874509646068 8.70872512218963 0.130679933705368 0.127692662299418 0.133243305504309 0.127692662299418 0.128968484752903 0.139984435676279 0.127692662299418 0.131323232511255 0.15176093194229 0.13788746398616 0.130694245768572 0.127692662299418 0.134133886844616 0.130942416379794 0.132931978201794 0.133602029493398 0.149085099673510 0.134924708175603 0.140247913374864 4 4|0 -|/ 1268952 1269776 1269357.5 1268713 1270525 - gene protein_coding_gene FALSE TRUE AT4G02860.1 catalytic similar to phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] (TAIR:AT1G03210.1); similar to Phenazine biosynthesis PhzC/PhzF protein [Medicago truncatula] (GB:ABE77454.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) 0.601807410096274 5.93510570794816 0.000102433193116815 1 6.71621455939067 18.3053569529362 0.601807410096274 0.100533853276405
AT2G33350_at 1.67205786647265 1.57509301666554 2.08151899677465 2.52060519230070 2.48443795938639 2.19049481272332 1.55462819055144 1.78437226945795 1.55307007095961 2.07997950380101 2.49171799533799 2.28833110716791 2.03326578091039 2.03189241255257 1.71949191552115 2.06844689645702 2.22789271833978 2.45783617001073 1.26157027543284 0.223465527229942 0.215768232168427 0.216083239274633 0.215986906676990 0.216801949382108 0.223749538276710 0.223705505319555 0.228692879342883 0.214335389424162 0.220525297898854 0.22142175756697 0.227367963656432 0.218264985338868 0.218536218361845 0.214914157938064 0.214335389424162 0.227210768995877 0.248179986443620 0.221666866771250 2 2|0 +|/ 14143043 14143884 14143436.5 14141005 14144230 + gene protein_coding_gene FALSE TRUE AT2G33350.1|AT2G33350.2 similar to zinc finger CONSTANS-related [Arabidopsis thaliana] (TAIR:AT1G04500.1); similar to CCT motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93890.1); contains InterPro domain CCT; (InterPro:IPR010402) 0.603022914491036 5.93472705464698 0.000102488793732385 1 6.71577941051536 3.88110070034242 0.603022914491036 0.101112477609999
AT4G39510_at 4.63056922010317 5.0237392917211 4.3765917177515 4.62386312285714 4.57815928405664 4.71614883006341 7.95313414693429 8.20582422918868 5.58409567264383 7.47144818878827 7.363477512277 8.61088454800267 7.39835360347021 7.28804894521429 7.84537202694018 7.7416350354044 6.50340625095932 6.53285614261617 7.07144646000857 0.204322836055449 0.201688515355081 0.208501420446762 0.209770898573792 0.209228308148945 0.203501175682929 0.200711950299229 0.200711950299229 0.202193196638336 0.212073512153285 0.200711950299229 0.204199880823953 0.201537268850435 0.207770288386020 0.200711950299229 0.202203540338582 0.215587178545558 0.203598325873781 0.204201881161524 4 4 - 18368958 18369505 18369197.455 18368797 18370646 - gene protein_coding_gene FALSE TRUE AT4G39510.1 CYP96A12 (cytochrome P450, family 96, subfamily A, polypeptide 12); oxygen binding member of CYP96A similar to CYP96A13 (cytochrome P450, family 96, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G02900.1); similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A11 (cytochrome P450, family 96, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39500.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.589059249503829 -5.93418158467751 0.000102568945964953 1 6.71515251139681 12.5732542462965 -0.589059249503829 0.0945675646221985
AT1G80570_at 3.43210746084527 3.37369611871966 4.16475785073609 4.04730081559325 5.18000328168219 4.66024803270604 3.11805339468055 2.60425859494103 2.73558829713176 2.68862245266166 2.70269567797231 2.19389581613029 2.97445900580970 2.28414327893850 2.26681232298438 2.86962835586754 3.21505591019694 2.65347637804246 2.65364513068417 0.276842455246778 0.273584659322681 0.28502526099451 0.286656137493980 0.29979149138039 0.290028167271892 0.282867993356154 0.283118999182638 0.283043551269147 0.272696063852008 0.277431011515064 0.277096490396037 0.272146498385578 0.269118482980907 0.274828310744001 0.269118482980907 0.286190855318090 0.270398878788479 0.275062939476286 1 1 + 30296580 30297068 30296783.636 30295217 30297312 + gene protein_coding_gene FALSE TRUE AT1G80570.1|AT1G80570.2|AT1G80570.3 F-box family protein (FBL14) similar to F-box family protein (FBL3) [Arabidopsis thaliana] (TAIR:AT5G01720.1); similar to OSIGBa0134J07.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66385.1); similar to Os12g0517000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066893.1); similar to Os12g0517100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066894.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089)|similar to F-box family protein (FBL3) [Arabidopsis thaliana] (TAIR:AT5G01720.1); similar to OSIGBa0134J07.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66385.1); similar to Os12g0517000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066893.1); similar to Os12g0517100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066894.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.666725409649833 5.93123012274092 0.000103003800349003 1 6.71175954041734 6.49137292877232 0.666725409649833 0.128496864153103
AT1G66160_at 1.91602930775510 2.35406647119637 2.7913615519158 2.58476068798897 2.72361608586141 2.75267536993331 2.12165571644965 1.8828915327369 2.88972495691942 2.42222761143508 3.38073339856448 3.25522850918421 2.87775696522808 3.33139941528626 2.93046752572843 2.70992155982164 2.94852384458763 2.54159589770591 2.09416342370633 0.213436955050705 0.210482532043941 0.213774765063033 0.207277592925960 0.215734131044946 0.216062600099354 0.213494236305452 0.210615669170153 0.206861213756704 0.214751112106223 0.215891464135273 0.217671383732479 0.211995224673763 0.211117082883103 0.206710123621643 0.206710123621643 0.221111935984754 0.218810338389937 0.210051173154969 1 1 + 24641586 24642118 24641767 24640859 24642271 + gene protein_coding_gene FALSE TRUE AT1G66160.1|AT1G66160.2 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613)|similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to syringolide-induced protein 13-1-1 [Glycine max] (GB:BAB86896.1); contains InterPro domain U box; (InterPro:IPR003613) 0.586345362858379 5.92742727429021 0.000103566996798521 1 6.7073855657621 5.12371145057982 0.586345362858379 0.0935797396424733
AT1G74250_at 7.35355522027568 7.3066557382877 6.94782872737901 6.66280760930446 7.52965926689444 7.53100522100975 7.53988872626737 7.15824820218971 7.31840241687063 7.5417454856767 6.53581813571475 6.50684106387797 6.81600094567762 6.30680906331069 6.22480226114375 6.31342264890809 6.7613658434849 6.66059705188647 7.56172889783102 0.207026375526676 0.214061201164969 0.209517298187895 0.213947920660682 0.218676798326773 0.214973617361195 0.212827857514028 0.208426171877231 0.219475175176823 0.208052658109660 0.217460222059246 0.211947912679686 0.217373913601244 0.222726950401469 0.207026375526676 0.21100024133698 0.217144686064257 0.228420909376306 0.208396135555634 1 1 + 27925342 27926036 27925641.182 27923989 27926075 + gene protein_coding_gene FALSE TRUE AT1G74250.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G11450.1); similar to DnaJ domain containing protein [Tetrahymena thermophila SB210] (GB:XP_001016844.1); similar to Os12g0502700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066831.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.565006786158563 -5.92673999403534 0.000103669132187122 1 6.70659479578157 14.248539119056 -0.565006786158563 0.0828293749198988
AT3G19930_at 9.72323632236554 10.0067638913854 9.15513874948129 9.154907390805 10.1616713379021 9.67808737314857 7.52780034298695 7.38592289026535 9.21254137299144 7.63776413131822 8.53779425031805 9.05726904970476 8.34481215056345 8.73465612501463 8.20585218172072 8.07754646778107 7.56257771291647 8.44492724609999 7.29243623507805 0.183028338660243 0.179333558726034 0.180801810327873 0.183716089347532 0.178716917318467 0.179321665254989 0.178711962601360 0.183696411575801 0.187718374717474 0.183292837920933 0.188157384708700 0.177922996783003 0.182938030801563 0.180082193942676 0.193252726016806 0.176734625810522 0.209437604455965 0.177932578430742 0.193394643555621 3 3|0 +|/ 6936173 6936669 6936488.4 6934779 6937126 + gene protein_coding_gene FALSE TRUE AT3G19930.1 STP4 (SUGAR TRANSPORTER 4); carbohydrate transporter/ sugar porter Encodes a sucrose hydrogen symporter that is induced by wounding. Identical to Sugar transport protein 4 (Hexose transporter 4) (STP4) [Arabidopsis Thaliana] (GB:Q39228;GB:Q570J6); similar to STP11 (SUGAR TRANSPORTER 11), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G23270.1); similar to monosaccharide transporter (STP9) [Arabidopsis thaliana] (TAIR:AT1G50310.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to monosaccharide transport protein 1 [Zea mays] (GB:AAT90503.1); similar to monosaccharide transporter 6 [Oryza sativa (japonica cultivar-group)] (GB:AAQ24872.1); similar to monosaccharid transport protein [Vicia faba] (GB:CAB07812.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.599809584651206 5.92529977239767 0.000103883509526468 1 6.70493743804647 17.3083210261979 0.599809584651206 0.100068490640276
AT1G31830_at 7.14008959854495 7.5348525458731 6.72486878501102 7.01554577788906 7.17184559667757 7.66474575555842 5.44347406287812 5.35863647542685 4.60897529791042 4.75990356157489 5.09933733060674 5.32129823358985 5.54466230341178 5.54866496165186 4.92751547422897 4.83221032033009 5.35647759192071 5.33395988167577 4.8036922244314 0.270198262917932 0.250059907631837 0.276606628000032 0.258168966185974 0.256201376219547 0.260401522325271 0.255599893534091 0.248958349105238 0.271981458317714 0.270904546753759 0.253903377603820 0.248958349105238 0.255242514622883 0.248967281178463 0.262244329968084 0.250850868633755 0.258850337190502 0.251824182735723 0.257136775256256 1 1 - 11418883 11419307 11419071.091 11418606 11420818 - gene protein_coding_gene FALSE TRUE AT1G31830.1|AT1G31830.2 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31820.1); similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT5G05630.1); similar to putative amino acid permease [Oryza sativa (japonica cultivar-group)] (GB:AAR10855.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97257.1); similar to Os03g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050538.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.648156854487332 5.92527580387589 0.000103887081246244 1 6.7049098528058 11.7416103864737 0.648156854487332 0.121197444998437
AT4G30960_at 10.4867008457521 10.5999528233023 11.2228049374899 11.1649866913858 11.6966765526772 11.3460333422533 11.1494123636419 11.017817349401 10.6972329963299 10.8558624256199 11.2781925773671 11.5835793193251 11.8376170965846 11.2776266673360 11.0891369332815 11.7270362710222 11.6046272105114 11.3788536063265 11.2605195299354 0.069595143609279 0.0698870615911049 0.0694593634747828 0.0709172285695335 0.0738751357485358 0.0746372370715052 0.0711517023124025 0.0701831253701264 0.077580035213173 0.0721238782046893 0.0693202649911495 0.0686470328513161 0.0703186692914514 0.070346365640679 0.0719321045615467 0.0687523852800353 0.0734503626369275 0.0701663771584089 0.070288359855771 4 4 + 15068139 15068687 15068467.727 15067059 15069016 + gene protein_coding_gene FALSE TRUE AT4G30960.1 CIPK6 (CBL-INTERACTING PROTEIN KINASE 6); kinase Encodes CBL-interacting protein kinase 6 (CIPK6). similar to CIPK20 (CBL-INTERACTING PROTEIN KINASE 20), kinase [Arabidopsis thaliana] (TAIR:AT5G45820.1); similar to CBL-interacting protein kinase 7 [Populus trichocarpa] (GB:ABJ91214.1); similar to CBL-interacting protein kinase 9 [Populus trichocarpa] (GB:ABJ91216.1); similar to CBL-interacting protein kinase [Brassica napus] (GB:AAL37170.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.539183297509071 5.92247139441081 0.000104305892272648 1 6.70168157557054 22.2905257936618 0.539183297509071 0.0684467552930502
AT2G38860_at 9.6798962390531 9.83287299795932 10.3540247408453 10.2031708173224 9.37379970260682 9.09609555180418 7.84161968402086 7.5605915047527 7.64333487860379 7.97209083902165 7.81160321700209 8.32651818591657 7.77964823247469 7.910198223941 7.53228033999217 7.46090391537103 7.67946039380036 7.50076638489076 7.39088066388759 0.197867217764924 0.193986207234815 0.198867582880126 0.199171346138732 0.193169066228874 0.187789527638055 0.184860561939486 0.189146218266083 0.192308633817094 0.190159206550004 0.192444817446344 0.180901656780357 0.192779509128297 0.186377933195491 0.187258929746475 0.199877849391863 0.188046042815650 0.189329677720229 0.212743703970929 2 2|0 -|/ 16240712 16241555 16241087 16240393 16242313 - gene protein_coding_gene FALSE TRUE AT2G38860.1|AT2G38860.2 YLS5 (yellow-leaf-specific gene 5) Encodes protease I (pfpI)-like protein YLS5. similar to DJ-1 family protein [Arabidopsis thaliana] (TAIR:AT3G54600.1); similar to Os04g0671700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054220.1); similar to Os11g0591600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068186.1); similar to unknown [Oryza rufipogon] (GB:ABC73064.1); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) 0.554715582267048 5.91572612016922 0.000105320628906317 1 6.69391113070069 16.9522294825512 0.554715582267048 0.0778275189842959
AT2G18230_at 7.99409465074057 8.27055052500498 8.33788903212042 8.41631378954112 8.10719158126776 7.96920299216602 9.79319991936992 9.55983154437746 5.78775633440198 7.67929091309665 6.068002890665 6.71420572345137 7.0293137181908 6.55886208013546 5.74626163569752 7.17713867059703 7.62357259100982 5.51935335975952 7.33700928509558 0.214294454452717 0.219250408357482 0.218129547109106 0.215376347908598 0.219387228929306 0.219293761969228 0.224065692029267 0.227890584479761 0.259902393472758 0.219502052703194 0.226926856748129 0.214294454452717 0.218371181560512 0.226643275249523 0.228979695357432 0.220167352661712 0.229605182330763 0.249696347819475 0.222400993844867 2 2|0 -|/ 7939356 7940543 7939924 7939005 7941411 - gene protein_coding_gene FALSE TRUE AT2G18230.1 inorganic pyrophosphatase (soluble) (PPA) / pyrophosphate phospho-hydrolase / PPase Identical to Soluble inorganic pyrophosphatase 2 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 2) (PPase 2) (PPA2) [Arabidopsis Thaliana] (GB:P21216;GB:Q8L988;GB:Q9ZPV6); similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT3G53620.1); similar to putative inorganic pyrophosphatase [Arachis hypogaea] (GB:CAG30522.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) -0.538433244137911 -5.91563514480727 0.000105334386719836 1 6.69380627384953 15.3006714266001 -0.538433244137911 0.0683686265853499
AT1G27850_at 4.33327431228082 4.30033888609884 4.36918829306454 4.4774916189459 4.60178411961491 4.44671086932675 4.4694098946985 4.48311523690524 3.6713647969419 3.87223720177101 5.14840582119209 5.03942431114271 5.09746271359177 5.1016870057902 4.37000275466567 5.08953800068496 5.25392190338557 4.35086750008813 4.5188832697957 0.196070943216218 0.198936163096729 0.198090382909013 0.204050204239278 0.206723839638673 0.211713982849012 0.195484934152392 0.195484934152392 0.229424837616429 0.199731435161521 0.198245880403870 0.204051964084328 0.200205448280850 0.200641254318622 0.199381857730246 0.197067900636478 0.209060167404456 0.205096982587289 0.203230123079813 1 1 + 9703009 9703639 9703275.455 9699252 9703928 + gene protein_coding_gene FALSE TRUE AT1G27850.1 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G09000.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG21939.1) 0.493922235611806 5.91450179157171 0.000105505939710633 1 6.69249986560434 8.91128524094386 0.493922235611806 0.0333101693067144
AT2G22230_at 6.23557404596355 6.32485911956082 4.57594971883990 4.32686860023298 4.54076822536162 4.78214559465439 6.86022426926623 7.44293800399631 6.14037973456808 6.43285518169445 7.2164352099993 7.72009008972308 6.44777514377586 7.1517290510095 8.25927773000584 6.3665223373845 5.95129031045563 6.99493099106676 5.82885274355176 0.227968940623898 0.22279055439674 0.230114171691583 0.232091801624179 0.2253212016917 0.241102289997018 0.220715182282212 0.228519759063611 0.231202569517184 0.224505322950191 0.224507889679666 0.227585041125105 0.225989018620369 0.222789614241231 0.227304303171379 0.220715182282212 0.239576502611788 0.224161508588561 0.222183934820407 2 2|0 +|/ 9457238 9458483 9457791.5 9457064 9458702 + gene protein_coding_gene FALSE TRUE AT2G22230.1 beta-hydroxyacyl-ACP dehydratase, putative similar to beta-hydroxyacyl-ACP dehydratase, putative [Arabidopsis thaliana] (TAIR:AT5G10160.1); similar to 4D11_17 [Brassica rapa subsp. pekinensis] (GB:AAZ67531.1); contains InterPro domain Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; (InterPro:IPR010084); contains InterPro domain Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; (InterPro:IPR013114) -0.639994343467523 -5.91257956298917 0.000105797584888938 1 6.69028360930727 12.2099337361673 -0.639994343467523 0.118366298180145
AT3G46930_at 3.89054392292038 3.62907077870535 4.80075498445673 4.6964168862809 4.63334338826378 4.17314880581559 3.16270420629285 2.52628962648606 3.32708468595553 2.40672156987052 2.51199538243032 2.97339829087036 2.78004090341226 3.0727278356706 2.95017178277230 2.90013589126317 3.3975808904769 3.04103711271793 2.71980395823599 0.223472348907867 0.215980329094035 0.236189931622156 0.220821845754187 0.216367131946413 0.239265485643062 0.221821660686324 0.216685071588254 0.221451818155947 0.215707533850801 0.222537515473696 0.214122429315275 0.227448376659442 0.216351007909627 0.213882872652694 0.213496884406902 0.226647123189352 0.213496884406902 0.213496884406902 3 3 + 17298292 17298985 17298667.909 17296628 17299017 + gene protein_coding_gene FALSE TRUE AT3G46930.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G58950.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06445.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.704639911225401 5.9071624087387 0.000106624126376907 1 6.68403433638175 6.82466211618057 0.704639911225401 0.144379581207011
AT2G27510_at 4.47686183671817 5.32655877538881 6.04416961951006 6.07009811389271 5.92232644985307 6.31464725637206 6.20505321927845 6.78187149985987 4.61518119802890 5.17105639332791 6.24337408356367 6.33827558074336 6.44196898911755 6.63549358427061 5.68244146640717 6.32850794500342 6.05390637603491 6.93803858191535 5.38695642268992 0.26003465919571 0.251239970418008 0.263697336460676 0.255881602640349 0.257394081402899 0.272148321304647 0.244737963584974 0.250783480018736 0.266035735024413 0.246254730134207 0.253339498907527 0.256015209770303 0.244198117259310 0.248531388979094 0.253637659277541 0.246083373838002 0.262595425472550 0.246287672562488 0.252892749691452 2 2 - 11765382 11765779 11765544.727 11765157 11766554 - gene protein_coding_gene FALSE TRUE AT2G27510.1 ATFD3 (FERREDOXIN 3); electron carrier similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to non-photosynthetic ferredoxin [Citrus sinensis] (GB:CAA87068.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041); contains InterPro domain 2Fe-2S ferredoxin subdomain; (InterPro:IPR006057) 0.832621757481037 5.90536529005428 0.000106899847927344 1 6.68196002400483 11.5879394283079 0.832621757481037 0.1903044392255
AT3G52740_at 6.10671958303373 6.35943020197487 6.0415743557687 6.29522460881413 6.04659700796407 6.11893527959323 7.91140278379708 8.55183788973328 6.96632486815328 7.39457577729514 7.1530032090953 6.86860790085157 7.21193226512229 7.5868717503372 6.15257927708197 7.00513686795963 7.07047281017396 6.85384512338468 7.25131572279412 0.182717575104876 0.187364229901226 0.198498107347789 0.185853547538747 0.188168319119063 0.183688475093742 0.192916071238743 0.196098698060482 0.193252451639865 0.191322908791427 0.185689318612936 0.184854541116922 0.182717575104876 0.188677261860673 0.186288037727977 0.185476982514397 0.199926388140049 0.192958209218212 0.186339009604240 3 3 - 19557424 19557811 19557593.727 19557352 19557942 - gene protein_coding_gene FALSE TRUE AT3G52740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44450.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77849.1) -0.661515386923195 -5.9048445648206 0.000106979881873215 1 6.68135887403284 13.7749043504591 -0.661515386923195 0.127590829268089
AT1G53430_at 6.38888696985354 6.85089206626914 7.07150893024644 6.77806726378763 7.83814711699844 7.33511594005452 6.64749346182885 6.22581165057382 7.1582764835097 7.13568013396032 8.75107719726704 8.31637740654962 7.94678638999768 8.31712621099805 7.74084734448612 7.90970437380805 6.66638645671902 7.05614875709439 7.12078897606028 0.220559564832926 0.219524088721090 0.228133535131628 0.229122888118524 0.216573094321234 0.223220708949936 0.223427732610296 0.216573094321234 0.243876484781865 0.225708125706892 0.220280713310237 0.216675271843190 0.234733844770322 0.229370922932154 0.224644930959479 0.216573094321234 0.238838726351935 0.244825841633378 0.22012206739659 1 1 + 19944076 19944594 19944364.636 19938835 19944756 + gene protein_coding_gene FALSE TRUE AT1G53430.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53440.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14840.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07650.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.713623505789324 5.90451470312774 0.000107030613726377 1 6.68097804129394 14.3801430740974 0.713623505789324 0.147899752348330
AT1G31200_at 4.51940404782012 4.35493456741068 2.85713832108448 2.93341652964089 3.77091900472792 3.34711836017431 3.62447663638226 3.35387435290754 3.26608146272989 2.92007483372235 2.94973430815984 3.09737238721238 2.72255841252748 2.35281219007161 3.27540900268136 2.66476342446973 2.61709799481221 2.93650171830744 3.57776137321285 0.208918625106766 0.207171035264364 0.200893167990317 0.206739925841756 0.205738378697020 0.203561939668567 0.201616329014645 0.198568063112559 0.206445521451552 0.207143016890091 0.204505608173269 0.201788175876514 0.198568063112559 0.220203609571724 0.199171588588061 0.20619862439669 0.209977052998864 0.207307198874958 0.209907697189052 1 1|0 -|/ 11146910 11147619 11147109.5 11146904 11147659 - gene protein_coding_gene FALSE TRUE AT1G31200.1 ATPP2-A9 (Phloem protein 2-A9) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10155.1); similar to lectin [Glycine max] (GB:CAB44031.1) -0.581816195332345 -5.90397577528603 0.000107113554635106 1 6.68035579574265 6.6359954290195 -0.581816195332345 0.0924994835032588
AT3G01790_at 5.89027650727228 6.19608648246329 4.57712234242936 4.8059900521552 4.65248138663991 5.28964607407594 5.17763063037297 6.3469305151375 5.19398945993998 5.24064924613509 4.2157432572058 4.65742742327375 4.62969337038103 4.39104839418129 5.11085032950809 4.1665035933647 3.94854818020209 4.26716056528322 5.51582167347749 0.208165965841065 0.200846790254212 0.201589518793995 0.202182902305496 0.206306097687568 0.207056771921875 0.200538936301616 0.200538936301616 0.202828143304954 0.205699825582693 0.202081704870212 0.210340385897573 0.218784560769207 0.204891505047637 0.200538936301616 0.204566162246798 0.220835457762861 0.208589178108684 0.210418286841255 3 3|0 -|/ 284547 285547 284929.111 283696 285785 - gene protein_coding_gene FALSE TRUE AT3G01790.1|AT3G01790.2 ribosomal protein L13 family protein similar to EMB1473 (EMBRYO DEFECTIVE 1473), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G78630.1); similar to putative ribosomal protein I [Oryza sativa (japonica cultivar-group)] (GB:BAC99787.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, bacterial and organelle form; (InterPro:IPR005823) -0.982434653664464 -5.90350043212636 0.000107186766790587 1 6.67980692253111 10.2371165066646 -0.982434653664464 0.239737943586075
AT3G09920_at 7.7015461636638 7.6180128447808 7.62756764032307 7.55064337335663 7.9959362356923 7.65696445389598 8.27892581559552 8.21528186045559 8.33115535703287 8.5055327473852 7.57671077905592 7.57486599769404 7.44700234088822 8.00745627942942 6.79566369338462 7.87364576934676 7.70482848405709 7.54708296067237 8.29183962596606 0.147044382674278 0.153411313162393 0.157144110720811 0.157852246015868 0.150770325036033 0.146799710354027 0.157839808598348 0.151402639188192 0.145536643742731 0.147039850107220 0.153676126288441 0.159017151869758 0.159443709358943 0.151347248355653 0.161209601438809 0.14753277314966 0.162472074741041 0.150338780832716 0.149954157528388 3 3 - 3040481 3041184 3040876.182 3040308 3044773 - gene protein_coding_gene FALSE TRUE AT3G09920.1|AT3G09920.2 PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase Identical to Phosphatidylinositol-4-phosphate 5-kinase 9 (EC 2.7.1.68) (AtPIP5K9) (1-phosphatidylinositol-4-phosphate kinase 9) (PtdIns(4)P-5-kinase 9) (Diphosphoinositide kinase 9) (PIP5K9) [Arabidopsis Thaliana] (GB:Q8L850;GB:Q9SF93); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G10900.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to phosphatidylinositol-4-phosphate 5-kinase [Oryza sativa (japonica cultivar-group)] (GB:CAD27794.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) (GB:Q6EX42); similar to Os02g0822500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048560.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.527966308684462 -5.89635252709187 0.000108294145673430 1 6.67154851879535 15.8016512725675 -0.527966308684462 0.0628375710964056
AT2G39760_at 7.28402518201789 7.45579333284312 7.26273491914005 7.30505296993903 7.89016853584258 7.65279945912829 7.48030193330034 7.23688236315971 5.36089462499663 6.06048685486804 6.93722418912116 7.13274490028941 6.47864488333616 7.08922241688996 6.68732190118243 7.07100537089169 7.13327077123579 5.77244880660493 6.2318631779536 0.19802844267462 0.193528750726116 0.197208244733906 0.195819567548786 0.197860759140354 0.202414481198591 0.197202475104581 0.205520302909029 0.234130592898870 0.206237218432581 0.193528750726116 0.198787130966985 0.200833821141388 0.205239706343255 0.208758235023173 0.193528750726116 0.222370111369137 0.217288006459942 0.203031387050067 2 2 + 16591416 16592883 16591754.727 16590151 16593330 + gene protein_coding_gene FALSE TRUE AT2G39760.1|AT2G39760.2 ATBPM3; protein binding similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to Os07g0101400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058677.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); similar to Os07g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060495.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37987.1); similar to Os07g0101400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058677.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.533379393593368 5.89621508687247 0.000108315557636218 1 6.67138963762164 13.7820449823631 0.533379393593368 0.0663258455162565
AT3G53460_at 10.4957171278237 10.5406986309077 9.92605573444256 9.97082234145803 10.4974834882413 10.2610492032564 8.97293578435717 9.03181730866423 9.27001098577317 9.23526901658168 9.3125148549137 10.0601243478653 9.72031140223039 9.60557651832834 10.3391142557374 9.64175222344401 9.84331884487275 9.23959602917222 8.8522451915936 0.137603853024144 0.132008732026339 0.136875052021298 0.129644397835247 0.13038522893511 0.144799047545239 0.131477700992806 0.132426900703061 0.134312090453822 0.131478659476183 0.125190997601796 0.124545661966397 0.126112944183665 0.123457770179359 0.125007423650446 0.124364412451845 0.136058704375204 0.135625405185374 0.135148130245624 3 3 - 19830919 19831297 19831140.1 19830188 19832483 - gene protein_coding_gene FALSE TRUE AT3G53460.1|AT3G53460.2 CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast. Identical to 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) (RBP29) [Arabidopsis Thaliana] (GB:Q43349;GB:Q94BT1;GB:Q9LFH2); similar to 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana] (TAIR:AT2G37220.1); similar to 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) (GB:Q08935); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.502336986916209 5.89395064169324 0.000108668989061622 1 6.66877145497221 19.3818042645039 0.502336986916209 0.0435725353715049
AT4G38460_at 8.69827079178724 8.4129939663522 9.00151859649404 9.16278218186352 9.2375421044198 9.1276539702295 8.58612076736716 8.7327923624967 8.14663336950278 8.39375745049904 8.74128899580628 8.17183493535087 8.93656428712142 8.75403022232594 8.42825624439162 8.8993853511223 8.85646086502943 8.38913087745595 7.79020582981463 0.122631131712285 0.124110477734632 0.129860320757249 0.135889093327505 0.130029323485869 0.132304134295396 0.132313554679585 0.127529793168008 0.150365958728727 0.125776853415506 0.128487473315670 0.132059672851864 0.122631131712285 0.130158939014162 0.126684596230479 0.124787727686229 0.134159748348541 0.130691250701086 0.137727679990191 4 4 + 17995378 17995895 17995633.455 17994775 17996199 + gene protein_coding_gene FALSE TRUE AT4G38460.1 GGR (GERANYLGERANYL REDUCTASE); farnesyltranstransferase Identical to Geranylgeranyl pyrophosphate synthase-related protein, chloroplast precursor (GGR) [Arabidopsis Thaliana] (GB:Q39108;GB:Q9FPK0;GB:Q9SZM6); similar to GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G36810.1); similar to geranylgeranyl pyrophosphate synthase-related protein (GB:AAA81879.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.530874915152107 5.89202146553195 0.000108971062816780 1 6.66654020179658 17.2486182704251 0.530874915152107 0.0649766154735995
AT2G24520_at 5.66376402931129 5.3140581439038 4.36989486293924 4.18540650086516 5.31862607357411 4.96806182792947 4.99181896378244 4.5845883563098 5.18416404188691 5.25613274973395 4.50263460697533 4.86562074100593 4.36577077035042 4.54744883672589 4.26373264876722 4.85370376442935 4.47185317540146 4.59048094199782 5.73249682662454 0.248795360669078 0.244594989894096 0.241199556897528 0.238602190457936 0.24119187611349 0.23887529558871 0.252044720011647 0.239694492159677 0.242723439282382 0.236491229752065 0.238752300109484 0.236491229752065 0.237661734493376 0.237294264880526 0.237384872663961 0.236491229752065 0.257069663959306 0.241341403626869 0.242724113991067 2 2|0 +|/ 10425848 10426781 10426195.333 10422512 10426863 + gene protein_coding_gene FALSE TRUE AT2G24520.1 AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to plasma membrane H+ ATPase [Prunus persica] (GB:CAB69823.1); similar to H(+)-transporting ATPase [Phaseolus vulgaris] (GB:CAA59799.1); similar to ATPase 5, plasma membrane-type (Proton pump 5) (GB:Q9SJB3); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.63066778868748 -5.88976159839537 0.000109326056504310 1 6.66392564228296 9.89882079072115 -0.63066778868748 0.115449929738094
AT4G00790_at 4.62364533070687 4.37996449237582 4.79825804795977 4.69422452593496 5.36930346460551 5.07320741053632 4.58497115226904 4.39540646204645 3.37734898525583 3.22407772994494 3.90391961199954 3.53579369184034 3.96168330462205 3.75536572908073 3.54356321203737 4.40451179333948 3.97601788294521 3.51398174368852 3.03981407228958 0.227646033996634 0.21871413271952 0.21871413271952 0.225080486530300 0.225013899934650 0.229566072688736 0.222632003206240 0.224102840527652 0.228003954049094 0.223168595133233 0.227657718837017 0.226127307621132 0.21871413271952 0.224527958538537 0.21871413271952 0.220053919908405 0.224592484594848 0.219310332300266 0.219946922283887 4 4 - 338667 339657 339166.545 336945 340602 - gene protein_coding_gene FALSE TRUE AT4G00790.1 protein binding / zinc ion binding similar to Os02g0124700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045740.1); similar to hypothetical protein DDB_0220016 [Dictyostelium discoideum AX4] (GB:XP_635240.1); contains InterPro domain 7-Fold repeat in clathrin and VPS proteins; (InterPro:IPR000547); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.549179597470149 5.88789644798065 0.000109619975039016 1 6.66176707294643 8.25892338598315 0.549179597470149 0.0761855286083662
AT2G24590_at 7.48873006024003 7.57334029523685 7.48216527593634 7.69898417039807 7.75267315850767 7.53498931743754 7.4789076129633 7.74783904646664 6.53901448131615 5.82954421167427 6.61837709878246 7.22791223915222 7.05755679209932 7.4230160818721 7.46799189045331 6.69893755726475 7.09594611076924 6.61288757168654 5.59020140444968 0.208574499747503 0.202928313175641 0.223193837727333 0.211613525307423 0.208505327065109 0.205882670100142 0.204456875355939 0.203410915234255 0.210657835960306 0.204994686596350 0.20500791878454 0.197705918200118 0.197705918200118 0.201159257836780 0.204698833868123 0.203656321358822 0.210601793657066 0.210298700427049 0.202081072073115 2 2 + 10456942 10457690 10457325.273 10456710 10458263 + gene protein_coding_gene FALSE TRUE AT2G24590.1 splicing factor, putative similar to SRZ-22 (serine/arginine-rich 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84871.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.542036764394912 5.88601888373672 0.000109916701395713 1 6.65959351715096 14.1004943839350 0.542036764394912 0.0721618640931136
AT4G32340_at 11.5189590488258 11.6663491092843 11.8232190170314 11.8613909599056 12.2555877556733 11.9125408933502 11.1678488642406 11.1825865539726 10.8893686757385 11.1278758622468 11.7139395833675 11.0356953969976 11.7823209263818 11.7578671713699 11.017325454731 11.6367080666722 11.5259455796826 11.4167877309472 10.9967099993539 0.102538268004931 0.0996154389318891 0.102034373411684 0.0996863706366524 0.103965947138363 0.125254443857979 0.102520982745709 0.101740916881078 0.110220758307131 0.106317857291386 0.0997577181505525 0.0998570648020249 0.0998438308706745 0.107502345028854 0.101981388711435 0.100154888499660 0.117660464040322 0.106682543144507 0.101257463768450 4 4|0 -|/ 15612760 15614071 15613519.7 15612590 15614311 - gene protein_coding_gene FALSE TRUE AT4G32340.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G80130.1); similar to Os06g0606700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058025.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92034.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.530210494365789 5.88423828677156 0.000110198894980031 1 6.65753164067348 22.9187979008931 0.530210494365789 0.0650002339443043
AT4G24990_at 8.73063143718362 8.82470654684349 9.0191474240529 9.23240754646169 9.35384944763156 9.22427321450298 8.09552305259525 8.43694120023394 8.56398892801648 8.03002801778875 8.88978732339155 8.51043815614582 8.68951167914454 8.84693875996642 8.3111707540518 9.0357832251757 8.52238246320064 8.63080924898426 8.22120526579254 0.159068623122907 0.159401687635094 0.155993867159389 0.159160922447797 0.164419872087288 0.157808311501403 0.163402756635499 0.165668512591390 0.160267091947690 0.163093494074325 0.153949795295926 0.155593782071027 0.152798252757107 0.161244350741213 0.158535132094340 0.154204669383569 0.158429389350024 0.165054095279016 0.167305125538800 4 4|0 -|/ 12849989 12851207 12850893.778 12849719 12851643 - gene protein_coding_gene FALSE TRUE AT4G24990.1 ATGP4 (Arabidopsis thaliana geranylgeranylated protein) geranylgeranylated protein ATGP4 Identical to Membrane-anchored ubiquitin-fold protein 3 precursor (Membrane- anchored ub-fold protein 3) (AtMUB3) (ATGP4) (MUB3) [Arabidopsis Thaliana] (GB:Q9SW27;GB:Q9ZRD4); similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT3G26980.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); similar to Os02g0750600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048133.1); similar to Os04g0393300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052648.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.546665406503272 5.88378628857439 0.000110270651748184 1 6.6570081516589 17.3403567029166 0.546665406503272 0.0749720974946637
AT2G40600_at 9.47200242822382 9.65423341595038 9.94311526465272 10.0198004728521 9.44912305991726 9.38955773261233 8.40450621218168 8.67305954776996 9.5035056944314 7.84594957594393 8.9103421274911 8.85208583130858 8.61553315263331 9.05185188725164 8.86279499851674 8.92902219120294 8.72599153655943 9.06769859327967 8.1059708666282 0.139431137414736 0.131323683840067 0.134567853221925 0.132567312153501 0.139521916945407 0.138090332199931 0.132774677646597 0.130530138109425 0.137562128944158 0.146517682749863 0.132909759200021 0.134899110885928 0.138515885371352 0.143078920542632 0.142297075038648 0.135521857911308 0.139135776839226 0.130530138109425 0.134808499120689 2 2|0 -|/ 16954142 16955368 16954831.7 16953948 16955639 - gene protein_coding_gene FALSE TRUE AT2G40600.1 appr-1-p processing enzyme family protein similar to appr-1-p processing enzyme family protein [Arabidopsis thaliana] (TAIR:AT1G69340.1); similar to Appr-1-p processing [Medicago truncatula] (GB:ABE88414.1); contains InterPro domain Appr-1-p processing; (InterPro:IPR002589) 0.52061086279486 5.8836504814071 0.000110292221490378 1 6.65685085735198 18.0567033094942 0.52061086279486 0.0586238290049297
AT3G22880_at 1.24912814166341 1.00627771295384 1.43323875631916 1.33512545942892 1.16845377331220 1.42764618755067 0.792820160678801 0.456189135887636 0.905321099623882 1.40632567085362 1.58923126696313 1.26025476018999 1.68856654727922 1.24864059500996 2.12877845298313 2.34562354058979 1.57744176216999 1.95117308354588 0.849643585308037 0.202780785911314 0.203602690705598 0.198783591559480 0.205302545935243 0.196145744708808 0.201267793579376 0.196650316172708 0.203850984115479 0.205255620657793 0.206119673196335 0.208253867524788 0.201258866081523 0.218699853605635 0.197605513874261 0.200873899797741 0.206688549285907 0.209451846931639 0.215356135593969 0.211390651834799 3 0|3 /|- 8098102 8098757 8098409.875 8097694 8100827 - gene protein_coding_gene FALSE TRUE AT3G22880.1 ATDMC1 (RECA-LIKE GENE); ATP binding / DNA-dependent ATPase/ damaged DNA binding Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene. Identical to Meiotic recombination protein DMC1 homolog (LIM15) [Arabidopsis Thaliana] (GB:Q39009;GB:P93001;GB:Q4V3A9;GB:Q9LIL0); similar to ATRAD51 (Arabidopsis thaliana Ras Associated with Diabetes protein 51), damaged DNA binding [Arabidopsis thaliana] (TAIR:AT5G20850.1); similar to Meiotic recombination protein DMC1 homolog (GB:Q96449); contains InterPro domain Meiotic recombinase Dmc1; (InterPro:IPR011940); contains InterPro domain Rad51, C-terminal; (InterPro:IPR013632); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Rad51, N-terminal; (InterPro:IPR010995); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553) 0.567481277759843 5.88181677247003 0.000110583903689874 1 6.65472670403101 2.49734851748428 0.567481277759843 0.0863720844647954
AT2G46650_at 10.1486669287530 10.3611796046749 9.89093774543207 10.0355946988524 9.77114860489923 9.58018661925691 10.0166440835351 10.1221133419377 7.14692194157874 9.10536413690886 9.903776277586 9.98177589143782 9.46378333705282 9.73521359768864 9.3018815066668 9.48014918146687 9.25003394812363 9.91916622588153 8.49211401298951 0.116295136930382 0.114633959706847 0.121226171374363 0.112595573975057 0.114752778678743 0.126501300749157 0.114530208647172 0.115411097434023 0.144836508078690 0.121342040315562 0.116042404552214 0.113274956511699 0.112595573975057 0.124747122260446 0.115591889171507 0.113988075791469 0.1164357500777 0.125410613816416 0.117690190596080 2 0|2 /|+ 19159072 19159430 19159293.778 19158716 19159670 + gene protein_coding_gene FALSE TRUE AT2G46650.1 B5 #1 (cytochrome b5 family protein #1); heme binding / transition metal ion binding member of Cytochromes b5 similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAIR:AT5G48810.1); similar to cytochrome b5 [Ananas comosus] (GB:AAM28288.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.519327529648633 5.87360916569405 0.000111899582981898 1 6.6452118076621 18.9296118831995 0.519327529648633 0.0583472773735293
AT1G55910_at 8.6751212211723 8.9891889482475 9.73900172804154 9.70507252532493 8.99607143240086 9.05310767114887 8.46726925516003 8.39118465303616 8.1497060676119 7.96593283404824 7.9540968143269 8.16075801122707 7.96527614880815 8.44171193537324 7.89299205769822 8.28243450078492 8.76305552370513 8.65814843899297 7.80163770934739 0.137648136732418 0.136956733640391 0.135122333257937 0.138058384776920 0.143556033201789 0.13820468434727 0.142040264914243 0.132313107948928 0.147166800165772 0.148734442652445 0.137647971766226 0.135295568834684 0.141959745306942 0.145665221660649 0.148007864960537 0.137184515821781 0.140470961732808 0.137740322010914 0.144512916008421 1 1 + 20910220 20910722 20910520.727 20909799 20911078 + gene protein_coding_gene FALSE TRUE AT1G55910.1 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR); cation transporter member of Putative zinc transporter ZIP2 - like family Identical to Zinc transporter 11 precursor (ZRT/IRT-like protein 11) (ZIP11) [Arabidopsis Thaliana] (GB:Q94EG9;GB:Q9LG21); similar to ZIP2 (ZINC TRANSPORTER 2 PRECURSOR), transferase, transferring glycosyl groups / zinc ion transporter [Arabidopsis thaliana] (TAIR:AT5G59520.1); similar to metal transport protein [Medicago truncatula] (GB:AAR08417.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.517502980843562 5.87304686474234 0.000111990328937244 1 6.6445595094033 17.1206195372501 0.517502980843562 0.0570901348467137
AT2G35155_at 6.2170887214223 6.97037002602072 5.52739679074741 5.22948307540956 6.33523264377463 6.39652060772154 6.75002569084267 7.12248920934746 7.41022836295506 7.23185636479939 6.59924593792474 7.057849355819 7.07165960911907 7.15997548093016 6.41027439673081 6.65784949762105 6.33194114211623 7.11578198122172 7.44797239408132 0.266073020806243 0.244834867039011 0.262407996199505 0.269143240230888 0.246221268873411 0.255637774505163 0.244834867039011 0.247505887731885 0.252566307773411 0.244834867039011 0.249151651849254 0.244834867039011 0.250828344249627 0.244834867039011 0.256145170186352 0.244834867039011 0.273516037836624 0.246001127983847 0.245794191147659 2 2 - 14826313 14826862 14826562.273 14826073 14829044 - gene protein_coding_gene FALSE TRUE AT2G35155.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45030.2); similar to Os08g0407200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061775.1); similar to OSIGBa0126B18.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66916.1); similar to OSJNBa0008M17.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD41791.2); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.727807665627455 -5.87271032238444 0.000112044678786269 1 6.64416907611423 13.4005381202261 -0.727807665627455 0.154656135852611
AT2G01170_at 7.03625191332947 7.17611772297653 6.77401678539703 7.08456956221998 7.8395653205537 6.85893023457832 6.13818086783935 6.25865222037849 6.47878789626798 5.79506697484135 7.01333477108888 7.2932797918842 7.26078624224408 7.35676676938507 6.96808773233852 7.17528206770803 6.78771660246079 7.23449128056452 5.79195130745034 0.184406185240342 0.190617840152709 0.210709324383078 0.197062100102895 0.190038342890832 0.198208184833068 0.198061638169126 0.188138394789813 0.19795768999421 0.192793480118582 0.186789585281429 0.184207351124603 0.184089753177851 0.191629816580421 0.182468330419868 0.189954848008090 0.191856285305772 0.18787856904727 0.189647358819299 2 2 - 102363 103060 102721.818 102193 104548 - gene protein_coding_gene FALSE TRUE AT2G01170.1|AT2G01170.2 amino acid permease family protein similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to putative GABA-specific permease [Oryza sativa (japonica cultivar-group)] (GB:BAD88024.1); similar to putative GABA-specific permease [Oryza sativa (japonica cultivar-group)] (GB:BAD88019.1); similar to P0660F12.26 [Oryza sativa (japonica cultivar-group)] (GB:BAB63860.1); contains InterPro domain Amino acid permease subfamily; (InterPro:IPR004756); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293)|similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to Os01g0607200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043529.1); similar to putative GABA-specific permease [Oryza sativa (japonica cultivar-group)] (GB:BAD88019.1); similar to Os01g0945300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045377.1); contains InterPro domain Amino acid permease subfamily; (InterPro:IPR004756); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.800626279456169 5.87207710743271 0.000112147016011363 1 6.64343440948201 13.4748623534403 0.800626279456169 0.180853631909076
AT3G63120_at 5.23527116455602 5.74076397688537 5.43953885706598 5.44156505556629 6.19010837862239 6.36799068061966 8.23145486160997 8.20420738005805 7.89078117235515 6.84032135996268 8.38865927513642 7.2610424452619 7.32202275016085 7.84517236471543 7.13601255399594 6.84102574108759 6.78594689871998 6.99855278685874 7.73199265956128 0.233998278660743 0.227333839494867 0.217015713668446 0.226726899603215 0.215782958078081 0.234202395263589 0.220706003274546 0.215782958078081 0.223795606450405 0.223789087785231 0.220578498140015 0.215782958078081 0.219183347245738 0.224384693940826 0.223182238104736 0.219921825818782 0.222459561632687 0.222169129701511 0.225049305594611 3 3 - 23334206 23334762 23334514.273 23333931 23335222 - gene protein_coding_gene FALSE TRUE AT3G63120.1 CYCP1;1 (cyclin p1;1); cyclin-dependent protein kinase similar to CYCP4,1 (cyclin p4,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G44740.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os05g0398000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055471.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -0.579258824054852 -5.87067395894563 0.000112374141709388 1 6.64180620075311 13.7613639190155 -0.579258824054852 0.0928566283314874
AT4G17900_at 8.90976236563088 9.12918423511034 9.51211693939963 9.45022786567152 9.36771977367205 9.17124036402804 7.48764244016356 7.43162538686697 6.70219137443947 7.52448502031493 6.86351155528924 6.72710870010018 7.02286895834089 7.14136420316681 6.31871521468843 7.44853574595317 7.47116514092617 6.53532336942531 6.9346997306156 0.227788093969913 0.239100401091222 0.24634041160455 0.234504106963704 0.244616926996065 0.237363194953272 0.227090073805931 0.239665030415845 0.243606702040132 0.229073247449376 0.226937839625039 0.227438087889786 0.240170015964253 0.246151953276048 0.247036020487279 0.229623199721618 0.237704020251017 0.248660792079856 0.231727474332880 4 4|0 +|/ 9946831 9947685 9947200.571 9945883 9948091 + gene protein_coding_gene FALSE TRUE AT4G17900.1|AT4G17900.2 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G32700.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734)|similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G32700.2); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 0.511527348973073 5.86845080125342 0.000112735006322511 1 6.63922574430538 15.804872997706 0.511527348973073 0.0529779890826097
AT1G29490_at 0.6074425210561 1.16926326545122 1.48755358439016 1.37322232363809 1.67563619572464 1.65823725414117 0.936903063350518 1.28115759777772 1.50673766333130 1.25013233806706 2.21849466546157 2.09607058268882 2.40427842512334 1.9004640100062 2.55577202392427 2.01420025954042 2.09780312477032 1.98423654420967 1.59658254792694 0.193841115929639 0.191292352318470 0.195305602698408 0.193405639200981 0.191292352318470 0.193268114934167 0.191292352318470 0.195470842286375 0.202376301492514 0.191292352318470 0.201534613696068 0.191292352318470 0.192402308632809 0.194060236574977 0.196300486977088 0.19759535630956 0.192772547139137 0.194736417525357 0.191673266465915 1 1 + 10319863 10320086 10319981.273 10319730 10320388 + gene protein_coding_gene FALSE TRUE AT1G29490.1 auxin-responsive family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29420.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.628867416127549 5.8660078233122 0.000113132978285817 1 6.6363891321596 3.07870987781154 0.628867416127549 0.115769313960630
AT3G49670_at 7.72639208041857 8.29885522138304 6.14069297166788 6.89507183487548 7.99853485323037 7.64038887453922 8.81534871209651 8.87789987492503 8.4270188757215 8.48438127914721 8.2861093756565 8.80469181639653 8.44866655737713 8.25929319780241 8.06664314237614 8.32634532471953 7.39799434751028 7.44734442657547 8.40078802857363 0.163834992317322 0.16277761041425 0.174789524633902 0.168175309781520 0.160775813357527 0.182298042866628 0.162013070429218 0.172172747154226 0.189525137596721 0.16929987530553 0.163988828123636 0.160489636745114 0.170952791601312 0.165401547849606 0.167461435652208 0.160489636745114 0.174206429830935 0.175020185808812 0.160489636745114 3 3 + 18431149 18431778 18431492.273 18428553 18432091 + gene protein_coding_gene FALSE TRUE AT3G49670.1 BAM2 (big apical meristem 2); ATP binding / protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to CLV1 (CLAVATA 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G75820.1); similar to BAM3 (big apical meristem 3), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G20270.1); similar to receptor-like protein kinase 2 [Glycine max] (GB:AAF91323.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to receptor-like protein kinase 3 [Glycine max] (GB:AAF91324.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.784355938111625 -5.86348645686543 0.000113545291976639 1 6.63346039533684 16.0826640952416 -0.784355938111625 0.175544548083698
AT2G43800_at 2.16433626254947 2.33293365638101 0.441279352372968 0.795886981638845 0.548827838072987 0.325722479370874 1.61187512576485 2.09346648858043 1.58482420253984 1.39208203509110 1.45207493443154 2.71935807529815 1.38422299201350 2.10558891255364 2.01757515529559 2.36438522274484 0.89098650558685 1.76423850083321 1.71670384569535 0.222248194208137 0.228456448304647 0.230535053696947 0.231154871667268 0.228752461062427 0.226811621879336 0.224903222326456 0.224080857376920 0.232856219713107 0.236986896410049 0.230959800321161 0.225829875853095 0.227573362760311 0.226994045369064 0.232776358228528 0.233041659923853 0.230537140588395 0.225661482945104 0.235652259503315 2 2 + 18155230 18155774 18155529.364 18152798 18155974 + gene protein_coding_gene FALSE TRUE AT2G43800.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to AFH1 (FORMIN HOMOLOGY 1), actin binding [Arabidopsis thaliana] (TAIR:AT3G25500.1); similar to FH protein NFH2 [Nicotiana tabacum] (GB:AAF24497.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.624978313776227 -5.86253458499519 0.000113701366074191 1 6.63235444005741 2.99021126398481 -0.624978313776227 0.114252504739207
AT1G18580_at 3.95867790177837 4.15038627860865 3.93149841955093 3.92337918854497 4.04574959189117 4.53373449419406 3.62010263919411 3.26284003766780 2.54213673095245 2.40385474308101 3.19151221353717 3.12632751374633 3.61526892536069 3.2741591515651 3.77189389299181 3.25520310020133 3.36096042392386 3.09247376345657 2.4564733267986 0.238268733814416 0.236024974828112 0.228885475687117 0.232140519608855 0.234929287937765 0.241583456885148 0.234648667054345 0.234877633371099 0.245005344122877 0.24950375766364 0.230558019659958 0.228885475687117 0.234271514027438 0.243130091791352 0.233897381622817 0.232539185264506 0.249631741266023 0.229405042293458 0.241495476866433 1 1 + 6396797 6397354 6397070.364 6395857 6398229 + gene protein_coding_gene FALSE TRUE AT1G18580.1 GAUT11 (Galacturonosyltransferase 11); polygalacturonate 4-alpha-galacturonosyltransferase Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT10/LGT4 (Galacturonosyltransferase 10), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT2G20810.1); similar to Os03g0413400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050360.1); similar to H0410G08.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67658.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.614537657693446 5.8598687340196 0.000114139692614532 1 6.62925620479949 6.8300276389497 0.614537657693446 0.10980231209043
AT2G16500_at 9.45769369818505 9.6052831071622 9.30738793012007 9.60291828438213 9.31302486524593 9.07076629481861 10.4063136439356 10.6075906099232 10.4454739744429 10.4527287266551 10.0612058437955 10.3614867335579 10.0900575439262 10.0768352875575 9.675924822804 10.2129043537343 9.66261567395517 9.77461634803369 10.2915124819109 0.100783273638987 0.103201790661457 0.106168237271871 0.098618381047761 0.0983433408803265 0.105871052430428 0.098927378398788 0.105860264654492 0.112240076289058 0.0982933741300281 0.101404138389961 0.0982933741300281 0.101942899077448 0.107654373793929 0.106347948360062 0.100799380063662 0.103642670043740 0.0993544890637575 0.101025942995598 2 2 - 7157936 7158356 7158097.818 7157704 7160421 - gene protein_coding_gene FALSE TRUE AT2G16500.1 ADC1 (ARGININE DECARBOXYLASE 1) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements. Identical to Arginine decarboxylase 1 (EC 4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) (SPE1) [Arabidopsis Thaliana] (GB:Q9SI64;GB:Q38938); similar to ADC2 (ARGININE DECARBOXYLASE 2) [Arabidopsis thaliana] (TAIR:AT4G34710.2); similar to ar (GB:AAR08423.1); similar to Ar (GB:O82475); similar to ar (GB:AAR08422.1); contains InterPro domain Orn/DAP/Arg decarboxylase 2; (InterPro:IPR000183); contains InterPro domain Arginine decarboxylase; (InterPro:IPR002985) -0.551405911454464 -5.85822122340997 0.000114411481679663 1 6.62734085043095 19.8643860810167 -0.551405911454464 0.078986223795937
AT2G23610_at 9.42255651432379 9.44059982670713 8.88142698986506 8.96747971460917 9.20023420493006 8.81645557178122 10.3782303470465 10.4390726809333 9.87880543176912 10.1130742628482 10.0193559060554 9.63670280208335 9.52415304928985 9.99810453127654 9.68174639639686 9.72585611510932 9.47953166131033 9.78001438463728 9.54193832161245 0.136944517115625 0.129158081470529 0.138629039611855 0.13786665988644 0.128068261715342 0.139736659134093 0.134452123008253 0.128263194707327 0.141801083146913 0.130985294265407 0.126239720683214 0.126239720683214 0.126239720683214 0.126887117842066 0.132414888004963 0.128365577257304 0.150809970175138 0.133324485524364 0.133990951453261 2 2|0 -|/ 10051584 10053258 10052462.7 10051259 10053612 - gene protein_coding_gene FALSE TRUE AT2G23610.1 esterase, putative similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.533819310798171 -5.85468774719795 0.000114996728235275 1 6.62323130211028 19.2309015368644 -0.533819310798171 0.0689440878961284
AT3G53210_at 2.67903610239082 2.69723882822731 3.0332608877971 2.57033769098816 4.40423420682274 3.99826452097098 1.93620855675557 1.83906453463418 2.79694355777661 2.42038456892686 2.51656947946683 2.49404552266815 2.44372699448960 2.69159489502780 3.07194915135789 2.98982991000265 2.41916168724438 2.39344121968312 2.64829759134903 0.218517135508092 0.222174725468189 0.218988530499518 0.22428475893634 0.236659971197665 0.221157282308910 0.225323758886762 0.219548302941182 0.231409117649230 0.217549721636301 0.217549721636301 0.217765729036393 0.217549721636301 0.219638052802065 0.217744543651175 0.221304862458855 0.223715106982105 0.225873077084647 0.222023014109609 3 3|0 +|/ 19732009 19732705 19732330.556 19731143 19732853 + gene protein_coding_gene FALSE TRUE AT3G53210.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G75500.1); similar to hypothetical protein [Thellun (GB:ABB45841.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.609650969642246 5.85356603490333 0.000115183183508818 1 6.62192625252836 5.51941321449505 0.609650969642246 0.107916973302928
AT1G13740_at 5.4025614540621 6.0059277411158 4.93398768530455 4.68001751865744 5.6906951300259 5.86834230788712 4.43403230918391 4.44108373534181 3.63352546649148 4.52955262983133 5.31575415215662 5.63688069228355 5.74104068493807 5.26572012657807 5.1559926048737 5.52546715358935 5.1335226867998 5.27307311993081 4.8596509478258 0.199430753022808 0.211092229019897 0.204962605425846 0.203394184411330 0.199052083868438 0.202499032197754 0.211451580809625 0.199052083868438 0.209346071842796 0.199931153323517 0.202513152560137 0.202304482988764 0.199052083868438 0.204498234811841 0.202695373614707 0.203647992162188 0.207119034719195 0.199052083868438 0.206349579450201 1 1 + 4714466 4715120 4714870.273 4713671 4715404 + gene protein_coding_gene FALSE TRUE AT1G13740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69260.1); similar to Os07g0602900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060209.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94628.1); similar to Os03g0419100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050378.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 0.631190535901861 5.85237704583367 0.000115381173862932 1 6.62054268732028 10.0430015272106 0.631190535901861 0.117391789596084
AT3G04640_at 6.59216489774658 6.96770622080393 6.78123225737389 6.8656485051334 6.81681950144338 6.40116337710663 4.17134125147807 4.39138568285049 5.50009769998322 4.10188786053472 4.42356504701810 4.62686266878267 4.6287920675847 5.06658864190173 3.96763504437546 4.17004868892343 4.15606865033685 4.4973615307068 3.66116571904566 0.239166602863955 0.240599184328016 0.250492478533443 0.247055201251568 0.248868103813882 0.248121118514623 0.237085281347588 0.244683148756793 0.237085281347588 0.242624570825643 0.238096458543625 0.239148646158621 0.247417662126790 0.241121928192058 0.253254372691769 0.242569687863640 0.25321792244049 0.241550891189463 0.240043036034069 3 3 - 1261086 1261509 1261286.091 1260912 1261689 - gene protein_coding_gene FALSE TRUE AT3G04640.1|AT3G04640.2|AT3G04640.3 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G07135.1); similar to cold-inducible RNA-binding protein [Ciona intestinalis] (GB:BAA77512.1)|similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G07135.1) 0.603315631488538 5.85101690831427 0.000115608109045961 1 6.6189596589896 10.5550155712295 0.603315631488538 0.105172105570248
AT1G27400_at 9.22329417842868 9.19840793925399 8.414532626927 8.26147060036235 8.82150469215852 8.5949623175165 9.31224240342595 9.4634533813371 8.9727101110084 8.39063869969546 8.48524595191231 9.11458025569948 8.52895997002616 8.31131922974378 9.25728279472539 8.03072469524382 7.67536779928956 8.04810479937738 8.67192829690697 0.15945607355852 0.159704186112482 0.172322316006169 0.164637546185566 0.162400989135804 0.158299522992838 0.157808291553102 0.160111565347113 0.163308385077140 0.155895837802405 0.154919544019344 0.157137084433815 0.161342422681432 0.160828370412034 0.161324068699079 0.158017360823197 0.169046779757089 0.161988350378513 0.157410833900611 1 1|0 +|/ 9515315 9516164 9515911.125 9515122 9516927 + gene protein_coding_gene FALSE TRUE AT1G27400.1 60S ribosomal protein L17 (RPL17A) Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Petunia x hybrida] (GB:AAL09401.1); contains InterPro domain Ribosomal protein L22/L17; (InterPro:IPR001063); contains InterPro domain Ribosomal protein L22/L17, eukaryotic and archaeal form; (InterPro:IPR005721) -0.511604715952525 -5.85023208508783 0.000115739271182706 1 6.6180460750231 17.4661704621959 -0.511604715952525 0.0542391847080929
AT4G17650_at 3.62512574720963 3.98899833244611 3.9952356452393 3.76092320775579 3.31588970363706 3.11221521852774 4.61332889998215 4.47189726490893 3.74852194410512 3.77781975180098 3.61240469138381 3.22788281080302 3.21340151043456 3.47398057659342 2.64796563654142 3.30520736981305 3.27920813453854 2.99277524345969 3.63056302763204 0.249131069657178 0.247805922901277 0.242844557426518 0.242844557426518 0.243201713235345 0.259511418777772 0.246641794529199 0.252229754293251 0.248071936505771 0.243038290792835 0.246707781790891 0.242844557426518 0.261490126136407 0.242844557426518 0.253180655164905 0.242844557426518 0.252528508324505 0.248180679150742 0.253073139577513 4 4|0 +|/ 9827947 9829332 9828669 9827528 9829672 + gene protein_coding_gene FALSE TRUE AT4G17650.1 aromatic-rich family protein similar to aromatic-rich family protein [Glycine max] (GB:ABC47856.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) -0.564318305915087 -5.85011246077097 0.000115759277111457 1 6.61790681517241 7.329487496401 -0.564318305915087 0.0863179905506416
AT1G43910_at 4.81740139266982 5.06569925093961 6.92983974276661 7.80108020527736 3.31833479408658 3.75111794060527 1.95085755148777 2.03793115703545 3.10557002131808 2.69485962258171 2.46916328547420 2.27369503116902 2.05695571510331 2.40952442247461 2.09480402043350 2.77810108502278 2.12658972417485 2.37483548556217 2.44716506957643 0.279186701589866 0.288357031163867 0.286228967010005 0.279475419155192 0.265337683816152 0.267545739054437 0.271822053173460 0.267069351460823 0.267687143854485 0.265337683816152 0.265337683816152 0.265942277608914 0.265337683816152 0.265337683816152 0.265783676628794 0.265337683816152 0.273766698783218 0.268767838424466 0.266851854836303 1 1 - 16658574 16659125 16658798.818 16658324 16660098 - gene protein_coding_gene FALSE TRUE AT1G43910.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50930.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAT37998.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.777940595501094 5.83962745132994 0.000117527196298042 1 6.60569092825746 6.99511117135966 0.777940595501094 0.174398823031080
AT1G73820_at 4.58929871510556 4.67954912633518 4.4607526783269 4.36473308040473 5.28095645403881 4.84774523382867 3.60625897187745 3.60552570256251 3.71053311221311 3.54248692857597 4.16616238131711 3.79687000629216 3.87101520709040 4.2947259615836 4.47818245713002 3.85746921743137 3.61615210330556 4.0619451515758 3.36608153680222 0.227129850737276 0.232893119112638 0.22839357390588 0.228420886007601 0.231557020446851 0.233465642337879 0.229310120500886 0.222131542451242 0.229736908772243 0.222131542451242 0.222131542451242 0.223151174998440 0.2258689525834 0.229282835671122 0.222131542451242 0.235069149604406 0.223717840006692 0.226474534323328 0.23478484914728 1 1 - 27759401 27760793 27760319.636 27759173 27760872 - gene protein_coding_gene FALSE TRUE AT1G73820.1 Ssu72-like family protein similar to Os12g0168200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066253.1); similar to Ssu72 RNA polymerase II CTD phosphatase homolog [Gallus gallus] (GB:NP_001007876.1); similar to hypothetical protein LOC393701 [Danio rerio] (GB:NP_957022.1); contains InterPro domain Ssu72-like protein; (InterPro:IPR006811) 0.548251758765792 5.83663608746331 0.000118036845250168 1 6.6022021804635 8.20811041359974 0.548251758765792 0.0783609784023245
AT3G15030_at 6.92891456751798 7.02952806688494 5.72922647331549 5.66283746998617 6.33509806069586 6.21825309065326 7.05719173394284 7.11380168159839 6.50600793449628 6.17394304294015 6.34027115168057 6.79357923945947 6.88458529988342 6.20935352614069 6.54745430339473 6.57276819638953 6.23690957307322 5.85517893814385 6.38277340973504 0.189969057857932 0.184762478476991 0.191911913634034 0.199361613303402 0.185804701890231 0.189928341316110 0.185698231507565 0.185927882949518 0.191847942470471 0.184608541177024 0.186592193737243 0.184619993297891 0.180845504604896 0.182237954940295 0.185925814120146 0.185264611758973 0.196191677386048 0.192733904902228 0.185012058597405 3 3 + 5063119 5063512 5063311.273 5062026 5064122 + gene protein_coding_gene FALSE TRUE AT3G15030.1|AT3G15030.2 TCP4 (TCP family transcription factor 4, maternal effect embryo arrest 35); transcription factor Arabidopsis thaliana TCP family transcription factor similar to TCP3 (TCP family transcription factor 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G53230.1); similar to mutant cincinnata [Antirrhinum majus] (GB:AAO43102.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.485117086346575 -5.83519962611894 0.000118282417267112 1 6.6005263111264 12.9014833885300 -0.485117086346575 0.0306595088728714
AT1G06560_at 4.05850218577631 3.66391352677258 3.57359362204971 3.39361608580856 3.41736291056519 3.54191732221466 4.04923746737396 4.04047184840521 3.84898177915993 4.03780360574033 3.44367538668644 3.40909343553361 3.33436128704701 3.3303206409999 3.92169616970276 3.75102753510127 3.27749432778133 3.62442523665469 4.51918792654631 0.221465207782485 0.225658116641235 0.222952917494881 0.221491719892063 0.220146998291851 0.230202538967336 0.219601548498456 0.217591332429484 0.231097321220810 0.230253017025578 0.223194314213155 0.220573176459178 0.225481479967466 0.217722141858967 0.216283928625341 0.221373156831855 0.232798223429842 0.218530383420405 0.220651733326168 1 1|0 +|/ 2010676 2011789 2011411.286 2007614 2012005 + gene protein_coding_gene FALSE TRUE AT1G06560.1 NOL1/NOP2/sun family protein similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to Os08g0365900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061645.1); similar to PREDICTED: similar to NOL1/NOP2/Sun domain family 6 [Rattus norve (GB:XP_225588.4); contains InterPro domain PUA; (InterPro:IPR002478); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) -0.54761072831648 -5.83474480105401 0.000118360285966890 1 6.59999560646306 7.54074496591439 -0.54761072831648 0.0781016923629765
AT4G23730_at 7.87753010238404 7.93194223865968 8.3764098473204 8.47222274312856 8.83750873672702 8.47977990483039 8.92838918333617 8.67697385286226 7.86362876289316 7.65384844029255 9.07667893973778 8.88530242135026 9.16686294989822 8.87139522708575 8.09531108785247 8.52822561421838 8.8552690207856 8.08281701859265 7.84705690233469 0.176826795904996 0.162506045103237 0.171322552095619 0.181100411497949 0.173961843464110 0.179144015656982 0.165511093267115 0.164232072264049 0.176915528210279 0.160873832014575 0.168499204955976 0.165276613597035 0.17122738768375 0.179860593133911 0.161477714720676 0.171996470474434 0.171366026691423 0.171495115534603 0.161256827479769 4 4|0 +|/ 12363926 12364770 12364374.9 12362494 12365108 + gene protein_coding_gene FALSE TRUE AT4G23730.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G61610.1); similar to Aldose 1-epimerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72415.1); similar to Os01g0658700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043765.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.547413106728867 5.83396046784452 0.000118494696829864 1 6.59908033497218 16.6892999862129 0.547413106728867 0.0780321838177266
AT2G37130_at 9.03987807732828 9.12595996337203 8.39530608776581 8.46094803445867 9.47750726213064 9.01601475257065 4.06397033473923 4.30363721265667 3.31817102477339 4.54125308848792 2.78307006375284 1.27876565257018 2.96783702432995 3.07286402012989 2.29950714429994 2.14206451453581 3.53588193596488 2.56231904221951 3.05127834149757 0.309283760014584 0.307511887409196 0.319584994869975 0.315902514335197 0.310641599139348 0.312869545075710 0.306372872515347 0.306372872515347 0.307138114902924 0.306372872515347 0.306372872515347 0.310802243952239 0.306372872515347 0.311298830081952 0.306372872515347 0.306727965897040 0.310903306337399 0.314087684565088 0.306372872515347 2 2|0 -|/ 15605338 15606207 15605687.1 15605000 15607156 - gene protein_coding_gene FALSE TRUE AT2G37130.1 peroxidase 21 (PER21) (P21) (PRXR5) Identical to Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) (PER21) [Arabidopsis Thaliana] (GB:Q42580;GB:Q43733;GB:Q93YM9); similar to PRXR1 (peroxidase 42), peroxidase [Arabidopsis thaliana] (TAIR:AT4G21960.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:BAC84057.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.573735246839903 5.83378007920843 0.000118525632974267 1 6.59886981646484 10.8439974621169 0.573735246839903 0.091920295066784
AT2G31350_at 8.91498642119385 9.04038091982793 9.54606622043078 9.60923290258475 9.82181320495271 9.78849257534084 8.89962015865126 8.68669867996019 8.50389430933155 8.17912961572846 8.53672584113164 8.00654366718432 8.5102153862798 8.43498954803934 8.08332878896483 8.73603298382053 8.99310233943183 8.54340281044206 8.18770570480711 0.123213583684446 0.120667200312805 0.123941860063049 0.121928105105444 0.127767550562723 0.122328779813478 0.11835519500861 0.126688652077979 0.125579250853711 0.129630371569027 0.130805809315103 0.128167652290662 0.124592393825574 0.131170764671097 0.128918439394304 0.12260364613385 0.132626230661474 0.124831869321741 0.120271217028343 2 2|0 +|/ 13376547 13377812 13377403.889 13375369 13378134 + gene protein_coding_gene FALSE TRUE AT2G31350.1|AT2G31350.2 GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding|GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II). Identical to Putative hydroxyacylglutathione hydrolase 2, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) [Arabidopsis Thaliana] (GB:Q9SID3;GB:Q3EBQ9); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.1); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|Identical to Putative hydroxyacylglutathione hydrolase 2, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) [Arabidopsis Thaliana] (GB:Q9SID3;GB:Q3EBQ9); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.2); similar to putative mitochondrial glyoxalase II [Cicer arietinum] (GB:CAC10212.1); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.498139570812522 5.83249843408686 0.000118745679653158 1 6.59737393545035 17.6738043256765 0.498139570812522 0.0445122803274093
AT3G61640_at 3.80655060279917 4.15797158848523 2.33564078657985 2.42112182609751 3.21097895633142 2.81321819159541 3.55020637797197 3.8211866830346 4.38313607336502 3.62967936183018 4.59485089225859 4.88582691052976 3.64596225604534 4.54314262056733 4.57983279674327 3.83334159336543 2.69480048265692 3.73480587726101 4.35780200092164 0.221811545506589 0.216963789678686 0.228548506697761 0.238161039619649 0.22211048580793 0.233526739296119 0.228371515359981 0.216963789678686 0.231328502986206 0.230948143217423 0.222042360574425 0.216963789678686 0.217359186903098 0.221568246847203 0.219050792448213 0.217958707595304 0.23532876628383 0.219683334154248 0.224323509385256 3 0|3 /|- 22821295 22821334 22821313.833 22821016 22821722 - gene protein_coding_gene FALSE TRUE AT3G61640.1 AGP20 (ARABINOGALACTAN PROTEIN 20) Identical to Arabinogalactan peptide 20 precursor (AG-peptide 20) (AGP20) [Arabidopsis Thaliana] (GB:Q9M373); similar to AGP16 (ARABINOGALACTAN PROTEIN 16) [Arabidopsis thaliana] (TAIR:AT2G46330.1); similar to unknown [Capsicum annuum] (GB:AAM12785.1); similar to Os05g0217000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054936.1); contains InterPro domain Protein of unknown function DUF1070; (InterPro:IPR009424) -0.599103794807761 -5.83103534074484 0.000118997411965942 1 6.59566592041735 7.35841416363726 -0.599103794807761 0.104185184105150
AT4G34610_at 5.8345538792655 5.8462607038289 6.56070657650142 6.54530161436288 6.21302633165003 5.88270813496124 6.89077365467993 6.30139289866362 6.09237432166663 6.23629782584774 7.61129237988645 7.09665620775037 7.55488697566811 7.12449414938867 6.93478107871345 7.36588880142686 7.43115070490087 6.98928013223524 5.94257914275144 0.204193864699365 0.207241465532915 0.205474815470359 0.203994805752336 0.207006681425766 0.206865178684809 0.20780068499345 0.201317260637054 0.208955504592973 0.200346064100761 0.202657835437518 0.199978836343997 0.202828133407061 0.216610804712389 0.211877957143633 0.206047594519801 0.204577221924966 0.202647104006757 0.210311393123100 4 4|0 -|/ 16530595 16531158 16530825.8 16530547 16532503 - gene protein_coding_gene FALSE TRUE AT4G34610.1 BLH6 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor similar to BLH7 (BELL1-LIKE HOMEODOMAIN 7), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16400.1); similar to benzothiadiazole-induced homeodomain protein 1; BTH-induced homeodomain protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAS18416.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.627663543625195 5.82880055284516 0.000119383017153939 1 6.59305629765001 12.9363259244899 0.627663543625195 0.116969354917599
AT3G20910_at 4.35387867543807 4.42676588651431 4.65537922517908 4.58361418688392 5.584915346271 5.15731831776172 4.09080576437467 4.20550149486117 4.17433517280602 3.55852958676481 4.34124482144043 3.85408147052076 4.00345945880133 4.43212483375756 4.16083997004126 4.16847056392992 4.74894105154173 4.15346621321843 3.85771116130537 0.219443234301502 0.220247659868766 0.219821384621482 0.210246911326488 0.228522436532648 0.223486213551379 0.215737949375703 0.210246911326488 0.220933769651895 0.219476027089194 0.213089767192729 0.213920577227291 0.218699857689325 0.216758838874256 0.216533488871095 0.214058908646479 0.218807409967351 0.217330257863804 0.221833974489657 3 0|3 /|+ 7327363 7328347 7327937.125 7326388 7328580 + gene protein_coding_gene FALSE TRUE AT3G20910.1 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-9 (AtNF-YA-9) (NFYA9) [Arabidopsis Thaliana] (GB:Q945M9;GB:Q9LIH3); similar to HAP2A (EMBRYO DEFECTIVE 2220), transcription factor [Arabidopsis thaliana] (TAIR:AT5G12840.3); similar to CCAAT-binding factor B subunit homolog (GB:AAC49266.1); similar to CCAAT-binding factor:SUBUNIT=B (GB:2204247A); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.547686027337282 5.82545607856985 0.000119962586222218 1 6.58914921172442 8.68044928959307 0.547686027337282 0.0786317995185268
AT3G19490_at 9.46409159541546 9.48929016677886 9.44195900450098 9.38110327243892 9.37379237958262 9.41209773853907 8.7709278919596 8.61579132184198 8.21594292708855 8.36563440388041 8.67025300275184 8.52031418657753 8.71288550686412 8.83117611962704 8.9623094554281 8.76370925939626 9.07056614017062 8.93840855470623 7.89477440660851 0.124099581515082 0.126207558803924 0.122797688208866 0.126853577553205 0.123272794140068 0.124081468697050 0.126348803374593 0.121988410941356 0.141497684319577 0.130691404259716 0.128056193837230 0.122790874575948 0.126857914828379 0.120251516624253 0.127140521372615 0.121625108337559 0.132264261934922 0.129313768351015 0.140985148149608 3 3 - 6754895 6755672 6755275.909 6754621 6758267 - gene protein_coding_gene FALSE TRUE AT3G19490.1 ATNHD1 (Arabidopsis thaliana Na/H antiporter 1); sodium:hydrogen antiporter member of Na+/H+ antiporter-Putative family similar to ATNHD2 (Arabidopsis thaliana Na/H antiporter 2), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G49810.1); similar to Na+/H+ antiporter precursor [Populus euphratica] (GB:CAD91128.1); similar to putative Na+/H+ antiporter precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD17583.1); similar to Os09g0109800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062568.1); contains InterPro domain Citrate transporter; (InterPro:IPR004680) 0.483565860215407 5.82357144988265 0.000120290497468956 1 6.58694667575293 17.7273750167402 0.483565860215407 0.029910456923558
AT3G61140_at 8.23457331376687 8.182866786929 8.65050430966446 8.42578873987102 8.2820752530646 8.30132917380716 8.10572818489256 7.8147142987055 6.7417195520491 6.1563405596696 6.6898652002737 7.1160363176131 6.96341751159121 6.76259349209095 7.20671187255382 7.10973515417034 7.57004670619465 6.8740849895261 6.06333050995007 0.175677451972343 0.175677451972343 0.176449077833888 0.177485799446835 0.176732099313547 0.175677451972343 0.179627177808376 0.178017432283898 0.193870404604692 0.190656857404681 0.180428693869160 0.180071987621984 0.180379132927216 0.177120919264807 0.178614819453256 0.180410113057317 0.192299010852767 0.176872981099915 0.183223771895129 3 3|0 +|/ 22638789 22639807 22639240.9 22637237 22641092 + gene protein_coding_gene FALSE TRUE AT3G61140.1 FUS6 (FUSCA 6) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development. Identical to COP9 signalosome complex subunit 1 (CSN complex subunit 1) (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) (CSN1) [Arabidopsis Thaliana] (GB:P45432;GB:Q8GYL2;GB:Q9C5F0;GB:Q9M2E9;GB:Q9M4G0); similar to COP9 signalosome complex-related / CSN complex-related [Arabidopsis thaliana] (TAIR:AT3G12850.1); similar to FUS6 (GB:AAA32792.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.523275793986905 5.8185262695366 0.000121173033959763 1 6.5810473559681 14.9282099806166 0.523275793986905 0.0643406086915968
AT2G45170_at 9.25180528852571 9.4299167664372 9.56414144598764 9.62227067167115 10.3819619899666 10.0034971394410 8.38740080574824 8.37368870688957 9.57946324856476 9.12872602538316 9.85914833754416 9.26812297737164 9.29844184062802 8.96221228514246 9.02357394726161 9.82146347139022 9.39369001349385 8.938604526957 9.12609569141757 0.119831685628925 0.120699193834968 0.121851377670995 0.120101054609529 0.124462327871819 0.122201398160934 0.120093762060400 0.126492810486125 0.129545661670991 0.116078189645945 0.125770936287244 0.116178865945940 0.125799077979026 0.139034917596834 0.116560549008575 0.116078189645945 0.125064988460138 0.124718784054567 0.123312997253220 2 2|0 +|/ 18631812 18632569 18632409 18631339 18632791 + gene protein_coding_gene FALSE TRUE AT2G45170.1|AT2G45170.2 AtATG8e (AUTOPHAGY 8E); microtubule binding Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes. similar to ATG8F (AUTOPHAGY 8F), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G16520.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein [Cicer arietinum] (GB:CAD33929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.537413553192443 5.8182927053767 0.000121214057405997 1 6.58077414062021 18.6762114335478 0.537413553192443 0.073119715925175
AT2G15390_at 6.24262727701571 7.14568476463902 6.41201360469744 6.7790739989251 6.78405635688761 6.09254902159696 2.64988134923286 2.43957163593940 4.87499496321103 3.14068892468888 3.28221395443120 3.74819245869098 3.44794719006033 4.36010170522497 2.91461822442468 3.86938120332910 3.94063712029755 3.51350990159355 3.31394479363398 0.267755582048815 0.262717293097602 0.259592733540179 0.268989648689592 0.268710034284813 0.260614876637087 0.262396520503251 0.269152978134354 0.259856691240865 0.262302909824514 0.259055958215334 0.259055958215334 0.259055958215334 0.260691360963158 0.270908143582759 0.259055958215334 0.270161863231446 0.260141881150826 0.259055958215334 2 2 - 6716441 6716996 6716694.1 6716342 6718238 - gene protein_coding_gene FALSE TRUE AT2G15390.1|AT2G15390.2 FUT4 (fucosyltransferase 4); fucosyltransferase/ transferase, transferring glycosyl groups|FUT4 (fucosyltransferase 4); fucosyltransferase member of Glycosyltransferase Family- 37 Identical to Probable fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4) (FUT4) [Arabidopsis Thaliana] (GB:Q9SJP2); similar to FUT6 (fucosyltransferase 6), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14080.1); similar to FUT5 (Fucosyltransferase 5), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15370.1); similar to FUT7 (Fucosyltransferase 7), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14070.1); similar to Putative fucosyltransferase 10 (AtFUT10) (GB:Q9SJP6); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938)|similar to FUT6 (fucosyltransferase 6), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14080.1); similar to FUT5 (Fucosyltransferase 5), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15370.1); similar to FUT7 (Fucosyltransferase 7), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14070.1); similar to Putative fucosyltransferase 10 (AtFUT10) (GB:Q9SJP6); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) 0.877757157365973 5.81579629741014 0.000121653455231049 1 6.57785332433312 9.27374130791735 0.877757157365973 0.210007287734028
AT3G22220_at 5.17225606542985 5.35895453131757 5.95029288138134 5.84091835758615 6.59355176308617 6.37217895299603 5.15965925208487 5.5009700571991 5.24807369348865 5.21741401193558 5.7177717293187 5.7745890878897 5.67395465404207 5.29130410432225 5.54051021564736 5.41357976628523 5.51473260409849 5.4769244709096 5.56966522558072 0.232650426567364 0.229422024658148 0.240564229872834 0.227831981176717 0.233458910254173 0.235011864167454 0.226321665527278 0.226316658186112 0.242070036391960 0.230489570330349 0.232098666821315 0.226752555440981 0.232651159835432 0.234187466861567 0.226316658186112 0.228501316122173 0.233167033281346 0.238619455913013 0.238350003980552 3 3|0 -|/ 7840123 7840654 7840347.25 7839562 7842881 - gene protein_coding_gene FALSE TRUE AT3G22220.1|AT3G22220.2 hAT dimerisation domain-containing protein|DNA binding / protein dimerization similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15020.1); similar to Os03g0822900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051738.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18451.1); contains InterPro domain Protein of unknown function DUF1544; (InterPro:IPR011523); contains InterPro domain HAT dimerisation; (InterPro:IPR008906); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Viral capsid/hemagglutinin protein; (InterPro:IPR008980); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) 0.54832268215855 5.81105617366298 0.000122492454780186 1 6.57230430388975 11.1913336356680 0.54832268215855 0.0797401058237489
AT2G37190_at 9.19440395739234 9.30656202158003 7.91472833412174 8.2775816046159 8.7838338100869 8.5674013479372 8.95035335461245 9.14761609559793 8.71283333931929 8.46019772331123 8.3452918316542 8.65287737365964 8.10686689736114 8.24808309752416 9.07457998274137 7.83492775984643 8.11479791576834 8.42434601227973 8.91035487200218 0.152100827771277 0.160534079737077 0.155707241759479 0.151359073386448 0.150825440661611 0.143963921361589 0.154261260621849 0.156315729354495 0.143963921361589 0.154689457635805 0.14778177454608 0.145016508712412 0.147838812484333 0.145778607551458 0.144045899814015 0.157401769221006 0.155306588077019 0.152488043187432 0.146535762966238 2 2 - 15626705 15627100 15626939.818 15626486 15627198 - gene protein_coding_gene FALSE TRUE AT2G37190.1 60S ribosomal protein L12 (RPL12A) Identical to 60S ribosomal protein L12-1 (RPL12A) [Arabidopsis Thaliana] (GB:P50883;GB:Q9ZQD3); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsicum annuum] (GB:AAR83868.1); similar to Os02g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047832.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) -0.554044101230886 -5.80854562171883 0.00012293931840896 1 6.56936371574116 17.2901517342757 -0.554044101230886 0.0829936549975784
AT3G08670_at 1.80746454713774 2.46253965096968 1.93075142271840 1.75153222583920 1.20013800223565 1.77322498726465 1.35187837899222 1.60380774134847 2.27454777918867 2.00600026231754 4.3246339720588 3.64540033143898 3.86713337244601 3.96410289803983 3.99565557144228 3.87468041869158 3.31650785605059 2.19290853535110 1.83229921394030 0.219589722552488 0.223048199929839 0.223383865257539 0.219589722552488 0.219834475395306 0.219589722552488 0.224235452741876 0.231112050927767 0.226749530617752 0.226645523417930 0.231396599369097 0.224186334085343 0.226036342980113 0.225012067401227 0.223298130786064 0.224419328894898 0.226631593028593 0.219607158907391 0.219589722552488 3 3 + 2635937 2636508 2636198 2633734 2636721 + gene protein_coding_gene FALSE TRUE AT3G08670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40070.1); similar to Os01g0819000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044636.1); similar to Os05g0480600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055856.1); similar to putative proteophosphoglycan [Oryza sativa (japonica cultivar-group)] (GB:BAD61066.1) 0.733750598763417 5.8083602718479 0.000122972378433557 1 6.5691465727182 4.57778893019095 0.733750598763417 0.159842941261387
AT1G02850_at 7.29295273982937 7.3559145714599 8.6092681342361 8.50900657602014 8.06040317259447 7.3905249879452 5.38526203817757 5.90912934190057 2.86130369809961 3.33520998710337 2.20844894911865 2.09290761167235 2.77957117569706 2.56401145828232 2.04305897874271 2.79946329057546 3.55075784853095 3.21946760091439 2.52324417685272 0.335582355172242 0.323559176339383 0.335557621379894 0.333579011132706 0.322755189117023 0.334585425863762 0.319080443742109 0.320729894308411 0.324236467308976 0.323498201621904 0.324716502432878 0.328131179573737 0.320583374334963 0.324415835830408 0.319080443742109 0.322750191004909 0.322601657732176 0.320606356420910 0.325515984382293 1 1|0 +|/ 632183 633058 632767.222 630505 633259 + gene protein_coding_gene FALSE TRUE AT1G02850.1|AT1G02850.2|AT1G02850.3|AT1G02850.4 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G22100.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G22100.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.703555477515147 5.80640084242261 0.000123322453395590 1 6.56685066885327 10.0959561043756 0.703555477515147 0.148584366155572
AT2G43060_at 8.63353277317349 8.6564955101258 9.26005862664111 9.31341479881018 9.63297366857642 9.5514771972611 9.00086199893284 8.83950420003203 8.00656884686781 8.44836646269121 8.12143354138432 7.62739089111617 9.35362693280953 9.06258544489741 7.69440007060115 8.95675135650421 9.57786802024563 8.74228273484438 8.5361577108855 0.134518629117656 0.134392408384962 0.135410325744077 0.134431094723633 0.136580635644409 0.142376189438899 0.134332875710612 0.136948098168044 0.159763869097470 0.139115517201213 0.145244538691621 0.152614405346220 0.134332875710612 0.135945122798356 0.163654068716662 0.137151238976258 0.139144170136159 0.136835528366275 0.141844535094170 2 2 + 17916324 17916765 17916573.909 17916262 17917159 + gene protein_coding_gene FALSE TRUE AT2G43060.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT4G30410.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89478.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.484280243079171 5.80361531296492 0.000123821950861517 1 6.56358563466445 17.5972432037934 0.484280243079171 0.0328586024833166
AT3G19850_at 8.65903989280386 8.5437197258164 7.6743813506962 7.7421906646566 8.53821955567602 8.32902913039264 9.04418101801048 8.76626891623305 9.5335162593061 9.36314112109469 9.4298445619137 9.13822131527198 9.11429862026467 9.21352330850456 8.97298030482133 9.29301216800403 8.78505157865 8.94541815425667 9.52074881320147 0.134586836192968 0.133499638003705 0.131144139916779 0.139157273655871 0.129052651573254 0.126463685092667 0.123616569933770 0.127194159538183 0.131932854860160 0.125950320813081 0.138635965309541 0.131848238756968 0.130968941448261 0.135887832949872 0.131533378796500 0.133712671588303 0.135975222654808 0.128255691223741 0.125783160915195 3 3|0 -|/ 6898393 6899917 6898879.333 6898187 6901261 - gene protein_coding_gene FALSE TRUE AT3G19850.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G50280.1); similar to H0403D02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68185.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) -0.521636096300236 -5.79768154384225 0.000124893192135666 1 6.55662583038385 17.7041350231165 -0.521636096300236 0.064494530304687
AT4G27720_at 5.98509302113841 6.92866274395192 3.17950253079297 4.24400375423373 5.81603996699259 5.06508871613469 7.79414689580638 7.7327426250041 6.62900518654285 6.76621302703551 7.24476292762856 7.91342281762103 6.72158154998873 7.29128744278324 7.80816664320256 6.51332402518131 5.47092244128063 6.5910112908328 6.35098810200436 0.274070894503472 0.264153252719518 0.281730965177511 0.283317819740264 0.25806559329342 0.270882570345103 0.270753852803644 0.261055785131306 0.287433316910127 0.261580249376796 0.25806559329342 0.25806559329342 0.259987347152859 0.271586307781918 0.263755849100201 0.258658052495662 0.28126086451792 0.273589565795854 0.25806559329342 4 4|0 +|/ 13832637 13833328 13832938.1 13831044 13833820 + gene protein_coding_gene FALSE TRUE AT4G27720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64650.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49310.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93637.1); similar to Os10g0519600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065080.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509) -1.08588072949138 -5.79659968556538 0.000125089565995466 1 6.55535622981785 12.6063493638447 -1.08588072949138 0.27856882581434
AT3G26740_at 13.2447956327758 13.2608371188984 13.4803416519704 13.3721403093859 13.5924560788539 13.5694245744133 12.3157485153107 12.2919485043033 12.3791134926782 12.2484063599785 12.4481866418508 12.3060410471609 12.9082197457403 12.6600375828693 12.0985204134647 12.5434957453298 13.0319394214019 12.3329485756455 12.3228696228325 0.0676175514447028 0.0691119812408298 0.0663912188990226 0.0678272820815824 0.0714127034351976 0.0685550795906314 0.067011176458942 0.0692081160876648 0.0718075815301821 0.0675921382721495 0.0693747043706894 0.0684753326210824 0.071706158660076 0.0673828227722876 0.0689092532896869 0.0687170786598728 0.0685080314514152 0.0658932949217803 0.0651943176121822 3 3 + 9829109 9829636 9829368.818 9829039 9829917 + gene protein_coding_gene FALSE TRUE AT3G26740.1 CCL (CCR-LIKE) transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. similar to light regulated protein-like protein [Thellun (GB:AAM19704.1); contains InterPro domain Light regulated Lir1; (InterPro:IPR009856) 0.474817682843521 5.7965431346523 0.000125099839901810 1 6.55528985952567 25.5699466174953 0.474817682843521 0.0197780741362309
AT1G80310_at 7.99280679503285 8.18927410486834 8.35272197276342 8.52066961838721 8.7138212596216 8.66139737844393 7.87350559334051 7.79988003383727 7.38484525797029 7.7144742921879 7.67615093549668 7.80128601557302 8.31944523342514 8.04625066778267 7.5513335367796 8.46415842096222 8.31961636980646 8.1877986985951 7.84301197121586 0.139910785680987 0.134737819312640 0.138175471186364 0.142749392005580 0.137411588768989 0.142487361174576 0.136454837848706 0.145964872476575 0.144014865663450 0.152390205845643 0.151530789621759 0.139830232353449 0.134790003934947 0.136926359563896 0.149639850557109 0.143943333902976 0.141592482638757 0.14151405636132 0.138853883488158 1 1 + 30200653 30201194 30200911.273 30199510 30201446 + gene protein_coding_gene FALSE TRUE AT1G80310.1 sulfate transporter similar to sulfate transporter [Arabidopsis thaliana] (TAIR:AT2G25680.1); similar to putative sulfate transporter [Brassica napus] (GB:CAC39421.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547) 0.498298534939446 5.79593178089523 0.000125210965251346 1 6.55457231539022 16.1096090071672 0.498298534939446 0.0473850094168853
AT4G10760_at 6.20368619028976 5.9472131211671 6.13214286201522 5.85061553270996 5.5128953329465 5.47519270094022 6.76512403237464 6.34072776693055 4.96008981350843 5.88305507529088 4.45159973617821 4.88711941637967 4.81096887840633 4.97620721557465 4.8893864252843 4.61848560787493 5.1264635745365 4.67306935636896 5.35997327870602 0.216932022102287 0.20986769182031 0.212515229182954 0.215218580700319 0.210578696531409 0.215408307110143 0.209190253286740 0.217813002000956 0.215387958717455 0.214174170669825 0.212969542542974 0.210310621401253 0.210653967854586 0.213194904672078 0.21497095325599 0.217668040270542 0.217295765421616 0.212448748731466 0.209190253286740 4 4|0 -|/ 6620008 6620716 6620412.222 6619813 6623347 - gene protein_coding_gene FALSE TRUE AT4G10760.1 EMB1706 (EMBRYO DEFECTIVE 1706); S-adenosylmethionine-dependent methyltransferase Identical to Probable N6-adenosine-methyltransferase MT-A70-like (EC 2.1.1.62) (Protein EMBRYO DEFECTIVE 1706) (EMB1706) [Arabidopsis Thaliana] (GB:O82486;GB:Q9M0N2); similar to EMB1691 (EMBRYO DEFECTIVE 1691), S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT4G09980.1); similar to Putative N6-adenosine-methyltransferase MT-A70-like (GB:Q2HVD6); similar to Os02g0672600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047707.1); contains InterPro domain MT-A70; (InterPro:IPR007757) -0.584176516690266 -5.79520187566318 0.000125343777461519 1 6.55371554087698 11.1310506501687 -0.584176516690266 0.0988943056309508
AT2G37060_at 2.53147582495972 2.74627446824456 3.14344181648328 2.73799170111546 2.84343131032375 3.00358045984543 2.15673792467184 2.53171074309994 2.60969351913944 2.64029998408002 3.45742661592802 3.43966652631796 3.73529297561423 3.06405120711468 3.44334969811931 3.31086604295470 3.46347121388934 3.55654392822983 2.77428495167909 0.248745170802522 0.253851546328470 0.248745170802522 0.248745170802522 0.259453534623633 0.26433643344996 0.267387056582082 0.266996749478548 0.266776355315058 0.263100809506845 0.256464248953283 0.255011532765914 0.257959199262238 0.253722726060469 0.258981603292028 0.251343586212143 0.248745170802522 0.253316604080529 0.248745170802522 2 2|0 +|/ 15583416 15584507 15583726 15583103 15584956 + gene protein_coding_gene FALSE TRUE AT2G37060.1|AT2G37060.2|AT2G37060.3 CCAAT-box binding transcription factor, putative Identical to Nuclear transcription factor Y subunit B-8 (AtNF-YB-8) (NFYB8) [Arabidopsis Thaliana] (GB:Q8VYK4;GB:Q9ZQC3); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G53340.1); similar to transcription factor NF-Y CCAAT-binding-like protein-like [Solanum tuberosum] (GB:ABB55377.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.599817811376395 5.79483561903468 0.000125410477422462 1 6.5532855873299 5.76612703658659 0.599817811376395 0.106225206732314
AT4G11370_at 3.54763264656210 4.06597206705178 4.61199239919277 5.39683488388419 3.78897669106531 2.7863823356454 1.40817564336767 1.81117388173409 1.26682019583610 1.24473775286814 1.60883428237309 2.14400865445638 1.82879097216852 2.17877219739423 1.75010313986248 1.65945178920205 1.39272456068637 1.77914630054225 1.24542606689037 0.252676355754699 0.260995644687382 0.273524284801097 0.264291385557376 0.258086322671973 0.270753406413272 0.249930250078876 0.24896537697004 0.248650056394928 0.260749493092301 0.247774925767686 0.24491805952022 0.252337905076185 0.247523391344447 0.248216256150125 0.24491805952022 0.251981963059804 0.248068900049760 0.253664401698510 4 4 + 6907790 6908142 6907979.545 6907669 6908378 + gene protein_coding_gene FALSE TRUE AT4G11370.1 RHA1A (RING-H2 finger A1A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA1a. Identical to RING-H2 zinc finger protein RHA1a (RHA1A) [Arabidopsis Thaliana] (GB:Q9SUS4;GB:Q9ZT52); similar to RHA1B (RING-H2 finger A1B), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G11360.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.989104499827738 5.79230076164004 0.000125873145433766 1 6.5503092318868 4.94967106470485 0.989104499827738 0.247912901455739
AT2G34940_at 5.11702144836807 5.33399441901102 4.22282619900558 4.24834308356971 2.94845065198885 3.40074823562178 2.56138624662787 2.93811392097361 4.74137914369889 3.24459415176304 2.98761500218114 3.16943116840582 2.66858352708119 3.04483603845057 3.10134519506167 2.93164519063155 2.95081169368140 2.98749330177692 3.73522816056656 0.295617451044499 0.295125562875316 0.272350207793964 0.275081772551231 0.263018463859341 0.260533731700452 0.263548430804629 0.260533731700452 0.299928430756958 0.269101672461902 0.262921900530985 0.260533731700452 0.272580529559566 0.264567881469524 0.271368091149113 0.262264036649207 0.274198546294161 0.260533731700452 0.260533731700452 2 2|0 +|/ 14749445 14750339 14749944 14747550 14750496 + gene protein_coding_gene FALSE TRUE AT2G34940.1 vacuolar sorting receptor, putative Identical to Vacuolar sorting receptor 5 precursor (AtVSR5) (Epidermal growth factor receptor-like protein 5) (AtELP5) (BP80-like protein e) (AtBP80e) (VSR5) [Arabidopsis Thaliana] (GB:O64758); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT4G20110.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.2); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT1G30900.1); similar to Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa proaleurein-binding protein) (GB:P93484); similar to Putative vacuolar sorting receptor protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05373.1); similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (GB:Q9FYH7); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) -0.604691989274687 -5.79026050206039 0.000126246859983026 1 6.54791279043062 7.29000417147995 -0.604691989274687 0.108656450434873
AT1G49580_at 2.46662471371294 2.88637504138528 1.68474243975980 1.88994668356405 2.04589276814831 2.20249374369758 3.17264973349187 3.31328529459626 3.48152152228298 3.74309016364455 3.66953981687348 4.41304918688655 3.70281346092048 3.37499403052797 3.96527728365251 3.61928386400721 2.58131094364402 3.51720385664206 3.9581507463612 0.262800855950238 0.256753565875977 0.26277764944653 0.261284660379758 0.266665561145319 0.255602700037838 0.25979394401236 0.264449477398019 0.259972261715141 0.268013176949875 0.26372124013908 0.255602700037838 0.256054674231746 0.255602700037838 0.264044535614319 0.264380702731292 0.273874309476819 0.255810816281270 0.260354468132987 1 1|0 +|/ 18357103 18357976 18357518.556 18355126 18358287 + gene protein_coding_gene FALSE TRUE AT1G49580.1 calcium-dependent protein kinase, putative / CDPK, putative similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G19100.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G56760.1); similar to CDPK-related protein kinase [Gossypium hirsutum] (GB:AAZ83348.1); similar to calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum] (GB:AAL30820.1); similar to CDPK-related protein kinase (PK421) (GB:P53681); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.563059104519723 -5.78995071716526 0.000126303706667399 1 6.54754885968936 6.12426206870644 -0.563059104519723 0.0886812450406732
AT3G47910_at 5.0672315048705 5.20176144765164 5.83479505227981 5.63692742533062 5.37437365508918 5.71374826590879 5.67457992318678 5.85637618622178 3.57914531819253 2.97482424577987 3.72142583913172 3.75416179918114 3.92145796954107 4.27546497795613 4.3736211028768 4.32800517481872 5.2702032415595 4.16019147456426 3.42862343189731 0.280537325976998 0.259091419403540 0.260710735664199 0.259091419403540 0.284412801067768 0.260982725184119 0.274067913534314 0.259822312710652 0.272902338091169 0.298349869528730 0.273568459231158 0.269698232857348 0.268634761337009 0.259091419403540 0.261427738520778 0.259091419403540 0.271813392113568 0.259215058621664 0.272542387539771 3 3 - 17688236 17688597 17688353.333 17685367 17692715 - gene protein_coding_gene FALSE TRUE AT3G47910.1 binding / nucleic acid binding / ubiquitin thiolesterase/ zinc ion binding similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT3G47890.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) 0.544004641499924 5.78984157794876 0.000126323740620610 1 6.54742064048432 9.32152290560584 0.544004641499924 0.0784445378109084
AT1G52760_at 8.64338024248662 9.0388062687947 8.94847502036025 9.05785934311161 9.04954746036669 8.59356179437197 8.01201282514533 8.1573731154901 8.06206154462338 7.39829193563704 8.34062376196525 8.39510615130123 8.21790524575948 8.26116033638155 8.52495193032271 8.38422874879508 8.56985290178006 8.01084712033067 7.26885153232925 0.168493594235318 0.165243496303013 0.177574977202920 0.167215859409163 0.16912990344746 0.172379376591832 0.16806823283362 0.171049262029774 0.180409666407444 0.180246573019401 0.175137449954598 0.162940072248952 0.173245295461581 0.172691853318677 0.172437761258531 0.162940072248952 0.181476625978213 0.173693786994494 0.172877415935472 1 1|0 +|/ 19655572 19656128 19655823.3 19654993 19656411 + gene protein_coding_gene FALSE TRUE AT1G52760.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G11090.1); similar to lysophospholipase [Hyacinthus orientalis] (GB:AAS20988.1); similar to Os02g0207900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.605575322644863 5.78951002282176 0.000126384622749264 1 6.5470311090998 16.6448701064873 0.605575322644863 0.109090235971696
AT1G31970_at 8.17708270953803 8.49723528708574 8.00644719375954 8.16504876517667 8.46510160891622 8.07665003269688 8.97117890891986 9.02238946949094 6.59234836368899 7.34645650126887 6.3974099594331 6.80183322771913 6.46055615319553 5.89022865430559 6.82656779457995 6.68396498478459 7.47190072124127 6.46553344361793 7.88342318355053 0.193143344750691 0.193877874222159 0.200496598596729 0.198467410492079 0.197372828269036 0.194082569661157 0.199784704067538 0.194546271833180 0.220193376434673 0.19690326256589 0.197891184507823 0.195900721507984 0.197743615574411 0.205534828892782 0.205632164235976 0.193946049171163 0.207268853984669 0.192252311984342 0.204724779732383 1 1|0 +|/ 11481625 11482628 11482073.667 11479846 11482870 + gene protein_coding_gene FALSE TRUE AT1G31970.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 5 (EC 3.6.1.-) (RH5) [Arabidopsis Thaliana] (GB:Q9C551;GB:Q9ZS13); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to Os07g0301200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059424.1); similar to RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAC78594.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.56899317121557 -5.78874309077625 0.000126525571275134 1 6.54612999532386 15.3720544387125 -0.56899317121557 0.0917629236952537
AT2G45670_at 7.64810614007465 7.84403888006312 7.84321696863079 8.0628877024887 8.67819996391517 8.3157348908659 8.28984088112377 8.65307679608472 6.04230720840972 6.21518589959658 7.73962999533124 6.9557383348271 8.24840791141013 7.34429986696043 7.32723332374316 7.8770562755535 7.40675935696845 5.91348429839575 6.6018252774348 0.206110073174441 0.198039143326417 0.197560089486302 0.201803518446947 0.197560089486302 0.204591220189784 0.200234420110156 0.197560089486302 0.235838290108735 0.203625837774250 0.197560089486302 0.197560089486302 0.205159132661605 0.225501891237473 0.207349210693058 0.198161509947005 0.217190761981001 0.251124508935051 0.200001665618421 2 2|0 -|/ 18824154 18825157 18824696.1 18821783 18825537 - gene protein_coding_gene FALSE TRUE AT2G45670.1|AT2G45670.2 calcineurin B subunit-related similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G80950.1); similar to Os06g0712300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058556.1); similar to JD1 [Nicotiana tabacum] (GB:AAG49320.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|similar to Os06g0712300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058556.1); similar to JD1 [Nicotiana tabacum] (GB:AAG49320.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) 0.590690457861797 5.78693632416959 0.000126858285784305 1 6.54400670574801 14.9858955940121 0.590690457861797 0.102375565775155
AT4G25740_at 8.4489733852878 8.5363666499404 7.67204405706743 7.64606228507792 8.15628860975439 8.05773565998963 8.87071998765198 8.82627945091644 8.00149162552363 8.07022580791399 7.74603964408574 8.41672580515822 7.80387770439132 7.92527890671805 8.80683726065517 7.66255163459077 7.75606798334846 7.77621314693936 8.38542182678108 0.158140449281531 0.150344686923361 0.162971263818973 0.160018590871873 0.152812636979678 0.159369349273621 0.154313216277986 0.156592219267539 0.158479301412603 0.159436650095830 0.152109945666066 0.148647033368230 0.153213735175113 0.157039924622717 0.151302324260538 0.151350172590296 0.159862816733648 0.1582664393892 0.154641865527088 4 4|0 -|/ 13107510 13108160 13107796.222 13107259 13108836 - gene protein_coding_gene FALSE TRUE AT4G25740.1|AT4G25740.2 40S ribosomal protein S10 (RPS10A)|structural constituent of ribosome Identical to 40S ribosomal protein S10-1 (RPS10A) [Arabidopsis Thaliana] (GB:Q9SW09); similar to 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana] (TAIR:AT5G52650.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55361.1); contains InterPro domain Plectin/S10, N-terminal; (InterPro:IPR005326); contains InterPro domain Fe-only hydrogenase, small subunit; (InterPro:IPR008953)|Identical to 40S ribosomal protein S10-1 (RPS10A) [Arabidopsis Thaliana] (GB:Q9SW09); similar to 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana] (TAIR:AT5G52650.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55361.1); contains InterPro domain Plectin/S10, N-terminal; (InterPro:IPR005326) -0.476616479073579 -5.78566319157683 0.000127093292131717 1 6.5425101881487 16.3463481427818 -0.476616479073579 0.0244737968157857
AT3G14595_at 11.0241584303613 11.0971026440339 11.6314872525719 11.7237362643531 11.9945636170227 11.7814657254049 11.7652657553705 11.6599969077486 11.1149671715048 11.0807928497252 11.8507935863798 11.3482265204221 11.9428004004671 11.8603920670471 11.2041507674894 11.6634349121775 11.9757434233951 11.5366894580894 11.0377706633635 0.0764599246773827 0.0735332284352749 0.0757575372655547 0.0721479580520968 0.072270313429131 0.0735240511959138 0.0723855552698566 0.0751332302713828 0.0749800960837534 0.0723912033770198 0.0727250622040574 0.0720705128298429 0.0717263592748121 0.0717263592748121 0.0750145141290563 0.0717263592748121 0.0785530307880498 0.0742354228602574 0.0751561680682194 3 3|0 +|/ 4909119 4910186 4909904.429 4908957 4910483 + gene protein_coding_gene FALSE TRUE AT3G14595.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os05g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056334.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.495558805430915 5.78413747490138 0.000127375534222237 1 6.54071638874844 22.9600333013407 0.495558805430915 0.04589146707197
AT2G41080_at 4.85557742770944 4.75447602211519 3.42446993284308 3.69742772665227 4.32741253830749 3.61965229041108 4.41930109775505 4.52753347555678 4.35132374169094 3.97056096229906 3.60996610061553 3.58958196899725 3.51628719007636 3.63376019305126 3.68808761542253 3.81239098988295 3.39603772622875 3.73876797851647 3.91002234379985 0.212522016116627 0.21737385359762 0.216095389662 0.222632591743068 0.216872015716079 0.222437441568765 0.222342994998177 0.218069065803411 0.219676195823789 0.211297188432007 0.212849272034803 0.213921143784463 0.211364222783714 0.216381794693780 0.212006445396889 0.214808808213015 0.225226587286493 0.211297188432007 0.223165773283182 2 2 + 17141109 17141604 17141317.364 17139931 17141671 + gene protein_coding_gene FALSE TRUE AT2G41080.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99550.1); similar to Os03g0816600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051694.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.663086881322515 -5.78402584060092 0.000127396211649836 1 6.5405851230274 8.05343747372488 -0.663086881322515 0.133753038093369
AT3G51150_at 4.00127065300176 3.64458628592093 3.29645088559108 2.85025918981544 3.13862688051353 3.38018233947774 5.06039678781879 4.81834458551338 4.79702365544248 5.56589748443076 5.53105774572151 5.60565637871207 5.27245291828414 5.42441612602971 4.6063429291894 5.71379048700098 4.85464646175406 5.10181783672833 5.49499320900913 0.215304161133432 0.217117195539558 0.242606281820812 0.24578220600468 0.235151335785398 0.237603142473042 0.214596875227577 0.216793122965581 0.229310894159453 0.222038418675441 0.214596875227577 0.215871995686038 0.221015844335091 0.221087648762621 0.221801734091733 0.214596875227577 0.219706684206873 0.220118125302784 0.220629196779018 3 3|0 +|/ 19016524 19017356 19016937.1 19011835 19017748 + gene protein_coding_gene FALSE TRUE AT3G51150.1 kinesin motor family protein similar to kinesin motor family protein [Arabidopsis thaliana] (TAIR:AT5G66310.1); similar to putative kinesin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD09937.1); similar to hypothetical protein [Thellun (GB:ABB45845.1); similar to kinesin heavy chain [Zea mays] (GB:AAK91822.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.618484296707098 -5.78101517368228 0.000127955213110886 1 6.53704418145516 9.04863673098407 -0.618484296707098 0.115214523283786
AT1G12550_at 2.52936206908835 3.22865378987449 2.56624867869833 2.50746065443297 2.49232992474216 2.79499121924299 3.73385879363284 4.12522560705215 3.75022918254417 3.87836966737067 2.84695708257005 2.97171518507743 3.25485340707083 3.17856645612166 3.38670231809353 3.35498614122617 2.77267273767409 3.52930909049199 3.61811907618421 0.250796531631426 0.250796531631426 0.252140603746269 0.252879816042533 0.258535919105060 0.273702688551785 0.253104701047921 0.251328938782062 0.270659509791563 0.26242724286718 0.251990595867032 0.258026236627153 0.255439450570695 0.252537705073062 0.255180584746571 0.250796531631426 0.275030021380444 0.261750741997794 0.258829138003766 1 1 + 4275040 4275801 4275519 4274592 4275979 + gene protein_coding_gene FALSE TRUE AT1G12550.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT2G45630.2); similar to B0616E02-H0507E05.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67836.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.700476559354234 -5.7808899825335 0.000127978514355157 1 6.53689690528621 6.45270448092407 -0.700476559354234 0.148589050008983
AT2G27710_at 9.92873761122116 10.0221857760682 9.57664213404424 9.63612197175574 9.1066518311182 9.20627008357526 10.1161758319787 10.3134091463802 9.94844277195484 9.82775670574846 9.49982178369222 10.0990327558972 9.11484652169008 9.4486722338538 10.3343165158662 9.3534552757174 8.99336410334125 9.28534075856665 9.58063528625917 0.148168353274383 0.147625757055984 0.148405353418415 0.148879841328429 0.142639823630275 0.156521265130535 0.137665921753503 0.148240972945170 0.154588911425145 0.144412892122806 0.142929519756934 0.141923573871603 0.150646662088318 0.152094235697694 0.151207296894222 0.145339764315847 0.155758782269413 0.153435715589832 0.148517802169781 2 2 + 11824007 11824447 11824149 11823849 11824944 + gene protein_coding_gene FALSE TRUE AT2G27710.1|AT2G27710.2|AT2G27710.3 60S acidic ribosomal protein P2 (RPP2B) Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acidic ribosomal protein-like protein [Solanum tuberosum] (GB:ABA40434.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.491605465349055 -5.77811829931471 0.000128495555115024 1 6.53363555531645 19.3891332140505 -0.491605465349055 0.042774683788418
AT1G06760_at 10.160825405587 10.2411069920766 10.7471544082689 10.8526909564331 11.0016692353393 11.0229596446291 10.3472436774813 10.3343275225753 10.2335033463932 10.1472622898753 10.3138719333708 10.3797172354356 9.99471208678886 10.0181215074783 10.4379109025551 10.4600328337460 10.4015235942551 10.4262254589967 9.58588447462203 0.0759506630569388 0.0744701177307908 0.07610716752497 0.075562475037057 0.077017600491203 0.0779033536931036 0.0755685951386106 0.0766818287301865 0.083045971391299 0.0783764132821167 0.0744701177307908 0.0744701177307908 0.0782826742815997 0.0803325666522609 0.0779379887915397 0.0748718692493116 0.078237508685038 0.0763109372185028 0.0826787487047912 1 1 - 2076818 2077205 2077003.636 2076503 2077697 - gene protein_coding_gene FALSE TRUE AT1G06760.1 histone H1, putative Identical to Histone H1.1 [Arabidopsis Thaliana] (GB:P26568); similar to histone H1.2 [Arabidopsis thaliana] (TAIR:AT2G30620.1); similar to histone H1 [Lathyrus sativus] (GB:AAK29452.1); similar to histone H1 (GB:AAC41651.1); similar to histone H1 [Lathyrus sativus] (GB:AAK29453.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Histone H5; (InterPro:IPR005819); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.475186867759507 5.77673577565359 0.000128754288453607 1 6.53200827439178 20.7349461374864 0.475186867759507 0.0233484058944232
AT4G30935_at 5.11846788557451 5.00562009630626 5.15010673641181 5.17929933502318 4.92308117172788 5.55311925225141 4.03308797961698 4.03968713200512 3.64594516192899 3.77988387208661 4.44926204305809 4.14525463566139 4.09010389436452 4.00480766202636 4.53391432291853 3.84931036364110 4.91773718236569 4.04929159401729 3.64738115471899 0.220814008547928 0.226633952990865 0.220175082914723 0.223094091325996 0.222147984045463 0.224091829557798 0.223872422452123 0.225612049982249 0.22416988277791 0.224393312217166 0.216093906659257 0.216093906659257 0.223915402040454 0.22331446974854 0.216945640372125 0.216261775435806 0.228105888261548 0.217544512749635 0.218661568111752 4 4|0 -|/ 15052028 15052692 15052260.7 15051820 15054048 - gene protein_coding_gene FALSE TRUE AT4G30935.1 WRKY32 (WRKY DNA-binding protein 32); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 32 (WRKY DNA-binding protein 32) (WRKY32) [Arabidopsis Thaliana] (GB:P59583;GB:O65556); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.2); similar to WRKY DNA -binding domain, putative [Medicago truncatula] (GB:ABE88719.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.608037999911472 5.77483145841432 0.000129111582842964 1 6.52976626739228 8.84832383619872 0.608037999911472 0.110887179613376
AT4G25620_at 6.36751255937709 6.92390567786691 4.80267943813172 5.22344672535016 6.218052397653 6.57893458916538 6.38096557660541 7.14343729678226 7.43248488687882 6.23054963156127 6.7597361090179 6.1341764011856 6.17506228563259 6.49163480884318 6.17338751825737 6.49084066852336 5.66365053536199 6.47263354132247 7.0976824688185 0.189119174766777 0.188996161769821 0.202343473930291 0.199503458869556 0.195857318520100 0.193053459931777 0.19025201449702 0.190420439562023 0.197612968487964 0.196142249616520 0.188714042232059 0.193551794073348 0.200580021042761 0.188826232755443 0.194379551747489 0.188714042232059 0.194321655368152 0.188741965362942 0.188714042232059 4 4 - 13067457 13068019 13067779.364 13067195 13069688 - gene protein_coding_gene FALSE TRUE AT4G25620.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G52430.1); similar to Os02g0822000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048555.1); similar to unknown [Thellun (GB:ABJ98061.1) -0.811637876158827 -5.7742715420731 0.000129216837165345 1 6.52910693935342 12.8125563972520 -0.811637876158827 0.189431036565864
AT1G53850_at 9.20364749211194 9.46180770737962 9.82542981227095 9.76967770597328 9.80464454090831 9.54518965756992 9.50027225608808 9.20812056620783 8.38302239258374 8.27596310975883 9.12157461515663 9.23757332891525 8.91239193285959 9.0563657836554 8.96917271682003 8.83283638000674 9.14565828572075 8.71177587531265 8.22519535371383 0.166214806606370 0.158669052132135 0.166287355301795 0.164153578958499 0.161062950132155 0.160295180001935 0.161524985618336 0.158635503555687 0.181246264123263 0.171146750404416 0.170994312803260 0.158859913827960 0.168706986905449 0.161154254430257 0.168650396241078 0.159133707167961 0.158635503555687 0.161367095383524 0.166856270488176 1 1|0 -|/ 20107803 20108993 20108393.333 20107621 20109683 - gene protein_coding_gene FALSE TRUE AT1G53850.1|AT1G53850.2 PAE1 (20S proteasome alpha subunit E1); peptidase|PAE1 (20S proteasome alpha subunit E1) Encodes alpha5 subunit of 20s proteosome involved in protein degradation. Identical to Proteasome subunit alpha type 5-B (EC 3.4.25.1) (20S proteasome alpha subunit E-2) (Proteasome component Z) (PAE2) [Arabidopsis Thaliana] (GB:Q42134); Identical to Proteasome subunit alpha type 5-A (EC 3.4.25.1) (20S proteasome alpha subunit E-1) (PAE1) [Arabidopsis Thaliana] (GB:O81149;GB:Q56ZL5); similar to PAE2 (20S proteasome alpha subunit E2), peptidase [Arabidopsis thaliana] (TAIR:AT3G14290.1); similar to Proteasome subunit alpha type 5 (20S proteasome alpha subunit E) (20S proteasome subunit alpha-5) (GB:Q9M4T8); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.548232543260413 5.77413496575591 0.000129242524958995 1 6.52894610581443 18.1864215007261 0.548232543260413 0.0816158600302394
AT4G11850_at 5.29601031409691 5.74999976225889 5.68134002971516 5.94058100764544 5.23899170514029 5.23473635721459 3.11723529147703 3.63319045965415 4.50404936228031 3.62040359879413 4.11445430693632 4.6590123081082 3.79512612003424 4.41743141136456 3.65949372522314 4.24644027467271 4.06398650825736 4.31879027067748 3.70392769421188 0.240411830046229 0.246925701670386 0.264628994311259 0.267761348523433 0.234920662600857 0.233449933569305 0.249079205523746 0.236100222750741 0.243093757087811 0.233521171198691 0.230895006065082 0.235241933742777 0.241095993053188 0.230895006065082 0.236059531444778 0.235548274639923 0.238978915728123 0.242969981761280 0.233898666957167 4 4 - 7129355 7130117 7129832.818 7129117 7133194 - gene protein_coding_gene FALSE TRUE AT4G11850.1 PLDGAMMA1 (maternal effect embryo arrest 54); phospholipase D phospholipase D (gamma) Identical to Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD gamma 1) (Choline phosphatase) (Lipophosphodiesterase II) (Lecithinase D) (PLDGAMMA1) [Arabidopsis Thaliana] (GB:Q9T053;GB:O48544); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to phospholipase D gamma 2 / PLD gamma 2 (PLDGAMMA2) [Arabidopsis thaliana] (TAIR:AT4G11830.2); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase PLDb2 [Lycopersicon esculentum] (GB:AAG45488.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); similar to phospholipase PLDb1 [Lycopersicon esculentum] (GB:AAG45487.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.645675815977136 5.77372403199272 0.000129319847778086 1 6.52846216641335 9.03757832461099 0.645675815977136 0.127114528546992
AT1G64960_at 4.22867860772856 4.37024053458959 3.71250843250856 3.61418345931708 4.36218701407408 4.59325422206552 4.16387379063025 4.12028833816997 4.70520204259189 4.63352523517631 3.88448578586570 3.84081406098114 3.66114473734281 3.71169289166888 3.88661344189305 4.63527945364956 4.29259394789095 4.11569908482464 5.22078138256769 0.223519334711216 0.221792398439371 0.223811150299144 0.231583824883589 0.226994955275920 0.225500081058570 0.221792398439371 0.223783368361578 0.227288566235869 0.222634130528538 0.228799948187758 0.226111811073874 0.227659586397303 0.221792398439371 0.230106508185729 0.224262171731493 0.224915676744849 0.226818970325513 0.225648456682958 1 1 + 24137137 24137654 24137365.3 24133581 24137712 + gene protein_coding_gene FALSE TRUE AT1G64960.1 binding similar to HEAT repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97639.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77434.1); similar to hypothetical protein MA4_8L21.30 [Musa acuminata] (GB:ABF70012.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.499933081859493 -5.7720131197778 0.000129642309776723 1 6.52644697458544 8.5740067893654 -0.499933081859493 0.0504534708888132
AT1G67360_at 9.87295966694396 9.96562108130854 10.7628419699157 10.8107281546044 10.2828374744435 9.80226350033685 9.65367046246772 9.56980676597911 6.40770771151963 7.37946459367826 6.38146298949923 6.23843675566791 8.14758684552706 7.4366203300313 6.63096715559767 7.90587041536942 8.49721503362173 7.44219615182072 6.82496125269101 0.260612422216501 0.254601290206082 0.260503779221321 0.254601290206082 0.25554554375485 0.273610909977342 0.254994952213539 0.254601290206082 0.28548794988142 0.27018342237202 0.258452538604155 0.264268981411269 0.257965362129776 0.255301642497778 0.269596765536455 0.258845598356026 0.262794875967918 0.25651875277977 0.269116009210828 1 1 - 25240763 25241408 25241097.091 25240474 25241879 - gene protein_coding_gene FALSE TRUE AT1G67360.1|AT1G67360.2 rubber elongation factor (REF) family protein Identical to REF/SRPP-like protein At1g67360 [Arabidopsis Thaliana] (GB:Q9FYF7); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to Stress-related protein (GB:Q9SW70); contains InterPro domain Rubber elongation factor; (InterPro:IPR008802) 0.556743277164597 5.77133899248806 0.000129769600334625 1 6.52565281332769 17.1929689573024 0.556743277164597 0.0863304639554153
AT1G54830_at 7.27398580611302 7.02300069479642 7.72387567188118 7.60699440580577 7.56048389059666 7.49754716480555 6.97770080009955 7.27200218649342 6.68616501755305 6.57346678349125 7.14502782760283 7.08265692219682 7.06342946172123 6.86508723432944 6.9935896039733 7.03335874293953 7.55176540077423 6.89364885874718 6.18322068098198 0.181877998038044 0.185565357722752 0.185883609976565 0.184517826201591 0.185495017804386 0.184543671122469 0.188382865422622 0.187664885403451 0.201189452264177 0.189943966347046 0.192984072635044 0.193353208469797 0.18735086363834 0.191061957484287 0.186719730805924 0.181877998038044 0.199069083650141 0.196147337773569 0.188448489257153 1 1 + 20455471 20455963 20455769 20454750 20456338 + gene protein_coding_gene FALSE TRUE AT1G54830.1|AT1G54830.2|AT1G54830.3 CCAAT-box binding transcription factor Hap5a, putative Identical to Nuclear transcription factor Y subunit C-3 (AtNF-YC-3) (NFYC3) [Arabidopsis Thaliana] (GB:Q9ZVL3); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.2); similar to At1g08970/F7G19_16 [Medicago truncatula] (GB:ABD32395.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.529086295295082 5.77035263493235 0.000129956087174963 1 6.52449068109105 14.1467094945128 0.529086295295082 0.0707683754922804
AT2G40280_at 6.85157184222882 6.9966534343563 5.87683108890431 5.90700560726447 6.23342312137568 6.3234365271926 6.9908576164727 7.35919546495485 6.89579900721005 7.22557514975641 7.21691526316475 7.74161117326892 6.87334876303855 7.21612795911097 7.32323014202828 6.79903638276081 6.26636562825625 7.06128865485 7.34313474089555 0.194211542294018 0.195142430324804 0.201012156221415 0.204150603142882 0.200088014622793 0.198369117266022 0.197438851418267 0.191394733140853 0.205740508085462 0.190865743287061 0.196337643755222 0.194977738053338 0.197298815377699 0.200042738201421 0.202283979481258 0.192385765343903 0.219525245658291 0.194809113974277 0.196480177744023 2 2|0 -|/ 16832803 16833496 16833192.4 16832578 16835476 - gene protein_coding_gene FALSE TRUE AT2G40280.1 dehydration-responsive family protein similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G34300.2); similar to Os01g0828300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044685.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93959.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.528495653398213 -5.76956025215318 0.000130106106853095 1 6.52355696583729 13.6759102353923 -0.528495653398213 0.070451391866442
AT3G62550_at 12.8218303351665 12.9735980476774 12.9303741681860 12.8117148179897 13.2106233787753 13.2859246513400 12.2214995342030 12.3517988649805 11.631112384597 12.0048188210361 11.8354243427746 12.0179858002037 12.894509185328 12.5194693538925 11.3705655847566 12.1396869173710 12.8565254413106 12.1044166765205 11.4771276244634 0.102946040669539 0.100951091938331 0.102300666569642 0.106470699697691 0.114238333294280 0.104551661428313 0.101501277009553 0.101126481523461 0.105340077696342 0.0997119604442026 0.110697755134879 0.105104180574322 0.0997119604442026 0.0997119604442026 0.112811396360752 0.102676950647443 0.103764433275681 0.101387171780293 0.105229975880656 3 3|0 +|/ 23147229 23148007 23147638.222 23146960 23148149 + gene protein_coding_gene FALSE TRUE AT3G62550.1 universal stress protein (USP) family protein similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.49022376398503 5.76773010091506 0.000130453310386289 1 6.52139995521677 24.7867584028574 0.49022376398503 0.0423052919700023
AT2G18890_at 4.049917464423 5.04259243491065 2.61245394669025 3.35468526137786 3.62210033510868 2.95778283173279 5.42080917712016 5.54576712894398 5.79918024980941 5.4931084421244 6.84309511709411 6.53040567177464 5.56568474567059 6.40150991781992 5.45502743565407 4.4822785019578 3.23038616363372 5.81100981798157 5.53572780015117 0.203980941613720 0.201791587357867 0.205257555906178 0.208669256434144 0.201791587357867 0.211779060222709 0.211709466535266 0.207544527093577 0.221826579052118 0.205327967164231 0.203641446156902 0.207759304854122 0.210914852961334 0.224836871567101 0.209179422791045 0.201791587357867 0.237840460945571 0.218099408928114 0.203690936333597 2 2|0 +|/ 8191914 8193740 8192753.9 8190972 8193878 + gene protein_coding_gene FALSE TRUE AT2G18890.1|AT2G18890.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18910.1); similar to Protein kinase [Medicago truncatula] (GB:ABE84011.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to ATP binding / protein kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G57670.2); similar to Protein kinase [Medicago truncatula] (GB:ABE84011.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.973715058434373 -5.76678323949196 0.000130633329851909 1 6.52028375359056 9.65039532361007 -0.973715058434373 0.244322491696522
AT1G03740_at 8.27300166232988 8.52183564630337 8.53123164145901 8.60693856332398 9.36156766792543 8.2855094780957 6.89336518903864 6.29788602924453 7.12517894653432 6.08836240574051 6.73018050605315 6.56087071893262 6.72891644702466 7.23652546757214 6.51730535489497 7.37387826716813 6.78110800060085 7.0781949157135 5.66154289807006 0.255803391693075 0.254954236668243 0.262675976375999 0.251397212535542 0.253925108215761 0.266256054497161 0.252035951631345 0.252419753304722 0.252222920806949 0.258931395451630 0.246946221283515 0.254079116458929 0.246946221283515 0.254840114061029 0.260849982459773 0.246946221283515 0.249894220380240 0.250901426533534 0.262769221885330 1 1|0 +|/ 935296 935907 935599.1 933512 937042 + gene protein_coding_gene FALSE TRUE AT1G03740.1|AT1G03740.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G44290.4); similar to Protein kinase [Medicago truncatula] (GB:ABE89394.1); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.89198370780098 5.76227894561253 0.000131493329594199 1 6.51497171285974 14.6802005896450 0.89198370780098 0.217536427106078
AT4G09350_at 7.12620455568588 7.20889259839257 7.72008238808623 7.72483877398264 7.14450979381112 7.26492126967393 9.4961979247684 9.29208465125224 8.163749536352 8.9396957364459 8.48048394950141 8.30988283551625 8.01800522055981 8.3338147541797 8.24867150429691 8.96606658737689 8.5567655050991 8.29159592509552 8.58938809457002 0.223456087572473 0.213188097259318 0.219193637346837 0.217774677788319 0.205736565012438 0.210857618617810 0.212270786471224 0.20804913055561 0.226796827807265 0.199185171159221 0.199185171159221 0.210290186750635 0.203002775572247 0.213566462896855 0.204088099613119 0.203020127124759 0.208971897753171 0.221224909876766 0.20405744281976 4 4 - 5931352 5931941 5931675.273 5931248 5932149 - gene protein_coding_gene FALSE TRUE AT4G09350.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G80030.2); similar to Os11g0216100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067508.1); similar to DnaJ family protein [Synechococcus sp. JA-3-3Ab] (GB:YP_475458.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.49043694002787 -5.75596038843458 0.000132709908481967 1 6.50751398107195 16.3546857816195 -0.49043694002787 0.0434436448567775
AT4G17120_at 5.34869187599208 5.08215284445612 4.71602343235866 4.77370244417475 5.57612228595747 5.45982799649031 3.34767043688622 3.76158935487951 3.71255651031245 3.83024134886469 3.84248193758212 3.4170754329866 4.13002457591682 4.17867820338098 4.30671852325455 4.18179912977449 4.10365997944064 4.3886710528471 3.55142154202289 0.291499660726903 0.270266486233309 0.271824281385153 0.268931342075396 0.288518480196290 0.274775598635308 0.267572512814375 0.274493112435694 0.266925786613346 0.267698893863753 0.262723117924934 0.262723117924934 0.262723117924934 0.263589468892847 0.266367469013986 0.262723117924934 0.267789854451575 0.262723117924934 0.272935876730837 4 4 - 9615999 9616514 9616280.364 9615997 9624221 - gene protein_coding_gene FALSE TRUE AT4G17120.1 similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48090.2); similar to unknown protein [Oryza sativa] (GB:AAG60185.1); similar to Os10g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065419.1); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.558479191178195 5.75418091365532 0.000133054690472966 1 6.50541240290418 8.64157845296502 0.558479191178195 0.0881089863697098
AT1G72090_at 5.08810146068478 5.29988688444191 5.04108357146047 4.63346673541802 5.10571298410442 4.67158805887595 5.31731748578189 5.26512113444017 5.53911883663633 5.43045946958982 4.50940456902902 4.94813971216739 4.26900320248996 4.7190100369247 4.8576674724675 4.74880963484563 4.61566402725339 4.93991925639948 5.61277169583604 0.195492754484232 0.197375529190419 0.193721654406448 0.192485019112577 0.190166627103573 0.200304739013842 0.196739097812553 0.191292115344052 0.206658474266687 0.202885493736142 0.190166627103573 0.191646975659401 0.192176263123331 0.194300210514109 0.196955038975305 0.190166627103573 0.201891617310008 0.204139032109785 0.209051988586005 1 1 + 27129757 27130372 27130102.636 27127229 27130557 + gene protein_coding_gene FALSE TRUE AT1G72090.1 radical SAM domain-containing protein / TRAM domain-containing protein similar to radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36390.1); similar to Os04g0434300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052840.1); similar to OSJNBa0088K19.13 [Oryza sativa (japonica cultivar-group)] (GB:CAD40910.2); similar to CDK5 activator-binding protein (ISS) [Ostreococcus tauri] (GB:CAL52951.1); contains InterPro domain Protein of unknown function UPF0004; (InterPro:IPR005839); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain MiaB-like tRNA modifying enzyme, archaeal-type; (InterPro:IPR006466); contains InterPro domain Deoxyribonuclease/rho motif-related TRAM; (InterPro:IPR002792); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.603070832806366 -5.7516517857458 0.000133546364980898 1 6.5024245074776 10.1669859092182 -0.603070832806366 0.109749060315376
AT1G79500_at 5.9089053594845 5.93591905982159 5.1105664840968 4.89628284838625 5.44548290807792 5.48619666116508 5.10738759616349 5.05925834942568 4.64555057545885 4.87503049280791 5.91260005890299 6.55995991652339 5.82244512174521 5.96882674292469 6.92675108425526 5.54074136294532 5.67141680427645 5.87721387340422 4.86751965828419 0.204907847595073 0.201949676322392 0.207121660951169 0.208455195914419 0.20667760276673 0.205054075445406 0.206418348026307 0.209878188706385 0.223428384373215 0.206801086407493 0.20665804806349 0.203992603896256 0.211463347408253 0.212568428403819 0.212793815623475 0.207117442567041 0.212148666923911 0.203710483666487 0.208350281246035 1 1|0 +|/ 29909438 29910840 29910343.857 29908319 29911452 + gene protein_coding_gene FALSE TRUE AT1G79500.1|AT1G79500.2|AT1G79500.3|AT1G79500.4 AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1); 3-deoxy-8-phosphooctulonate synthase Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II. Identical to 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2- dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) (AtkdsA) (KDSA) [Arabidopsis Thaliana] (GB:Q9AV97;GB:Q8L890;GB:Q9SAJ9); similar to ATKDSA2/ATKSDA [Arabidopsis thaliana] (TAIR:AT1G16340.3); similar to 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) (GB:O50044); contains InterPro domain 2-dehydro-3-deoxyphosphooctonate aldolase; (InterPro:IPR006269); contains InterPro domain DAHP synthetase I/KDSA; (InterPro:IPR006218) 0.485362714656453 5.75073070596008 0.000133725907958386 1 6.50133606709044 10.7842638813972 0.485362714656453 0.0389358574474333
AT1G14900_at 3.86487364891316 3.64855620880380 3.93701522528995 3.72047244139973 4.20652945071022 4.41595353387603 3.35156493215612 3.61126126765139 3.35852234396020 3.41510207191746 3.76348297556494 4.20382258768757 4.04021239130528 3.77583970600617 4.24361144820708 4.27023800624341 3.99167949836658 3.82717079433903 3.38198043863656 0.192870650202427 0.198623257229715 0.193428191272178 0.187168339259614 0.200952603255763 0.200306199596482 0.199524174390705 0.194196803090520 0.201981412257615 0.194158871163587 0.195930487848290 0.191659768286953 0.194240563516300 0.197169903437979 0.191767512861702 0.189227396102715 0.199641614881951 0.206766534701167 0.201977388737283 1 1 - 5138673 5139291 5138917.545 5138329 5139427 - gene protein_coding_gene FALSE TRUE AT1G14900.1 high-mobility-group protein / HMG-I/Y protein Encodes a protein belonging to the subgroup of HMGA (high mobility group A) proteins that interact with A/T-rich stretches of DNA. similar to histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to high mobility group protein I/Y [Brassica napus] (GB:AAF22135.1); contains InterPro domain High mobility group proteins HMG-I and HMG-Y; (InterPro:IPR000116); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.54011710311573 5.75022456484287 0.000133824677841041 1 6.50073789565371 7.54438273566826 0.54011710311573 0.0783508971185453
AT3G56720_at 8.37926581676096 8.15006812615303 7.9939652492297 8.01089233952649 8.89111978984066 8.2122653395898 6.89241679285233 6.63889668183232 7.04897958334663 6.80717537150701 7.71404005378834 7.55021227154839 7.182605643692 7.7793057383167 7.45147634198903 7.16183887462964 7.3275432126057 7.26729214869373 6.7961843463237 0.188328120262779 0.183595951172531 0.186440273895024 0.188430737161605 0.194174015271359 0.198093090655652 0.170812539106085 0.171268261212681 0.192736810699755 0.177011833083669 0.173603343985579 0.177367866492806 0.169042467963558 0.173788690916304 0.173268571838309 0.18319760653743 0.186016533106359 0.174049057844415 0.1818748620503 3 3|0 +|/ 21023087 21024129 21023485 21022032 21024399 + gene protein_coding_gene FALSE TRUE AT3G56720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44200.1); similar to putative small ribonucleoprotein [Oryza sativa] (GB:AAL31070.1) 0.653537505206248 5.74769989261159 0.000134318512297159 1 6.49775348816429 15.0528124599983 0.653537505206248 0.131559556275990
AT2G28000_at 9.80902023406107 9.88567572690718 9.20347479766973 9.18791441008804 9.25855330690957 9.13067175044252 10.4675270853814 10.4176239232333 9.40794750721163 10.2213683906965 9.61422324910788 10.3159560988644 9.71510433678366 9.57695981370553 10.6675908807534 10.0256003772938 9.941672616363 9.42206739157585 10.1030259991022 0.112156859410814 0.110987345799297 0.115327207831726 0.114714548241534 0.111500959201557 0.114480525714243 0.110987345799297 0.115565772631418 0.132250469708282 0.113592103357586 0.118336181481354 0.112202305748933 0.116757345879164 0.114548596864388 0.116957159252502 0.111949279586527 0.112103690542512 0.117290535947557 0.111091413765439 2 2|0 +|/ 11935661 11936236 11935986.9 11933526 11936466 + gene protein_coding_gene FALSE TRUE AT2G28000.1 CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. Identical to RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) [Arabidopsis Thaliana] (GB:P21238;GB:Q42554); similar to EMB3007 (EMBRYO DEFECTIVE 3007), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G18820.1); similar to chaperonine 60K alpha chain - rape (fragment) (GB:PW0005); similar to RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) (GB:P34794); similar to RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) (GB:P21239); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.475345981449572 -5.7471559442413 0.000134425164509946 1 6.49711033992757 19.5803963932830 -0.475345981449572 0.0273416556675509
AT2G18950_at 6.4682863650125 6.44710051957401 7.51240605499721 7.39094625830644 7.59676567865819 6.03045830072212 5.5102067683931 5.0346453268741 3.27242290610437 4.23311959881039 4.20114792450368 4.30929192498966 5.19037319965858 4.88258995228473 4.01393041224514 5.2472870084018 5.16956824061174 4.92787367843981 3.96200869217819 0.236041569014447 0.230885994529778 0.238894539493748 0.240059311596675 0.232101213194090 0.242259651088447 0.22914061539119 0.230653834177113 0.239286852259953 0.23232754273043 0.240423580781324 0.226965789434337 0.22970414092124 0.231240012786364 0.240079179625040 0.230619883546595 0.240308691972153 0.227871417734737 0.230854662838249 2 2|0 +|/ 8215494 8216898 8216230.667 8214424 8217456 + gene protein_coding_gene FALSE TRUE AT2G18950.1 HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); prenyltransferase Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading. similar to prenyltransferase [Arabidopsis thaliana] (TAIR:AT3G11945.1); similar to homogentisate phytyltransferase VTE2-1 [Glycine max] (GB:ABB70126.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) 1.09391252757590 5.74692554370425 0.000134470366456654 1 6.49683790537061 10.7814893382370 1.09391252757590 0.284077483124289
AT3G02580_at 5.79758560597718 6.40923508882808 6.31528430618145 6.7104650624766 7.15415584540417 6.74118965754095 6.12155926429794 6.47157853100909 6.85489394709974 6.30638919134266 7.79883649677424 7.55739753770216 7.6144306932723 7.59010427408723 7.74971021761149 7.29892292485371 6.8280466335523 7.30801008758953 6.52325773362038 0.225344200818402 0.218564647520080 0.239097067750418 0.235202596540295 0.225216937481972 0.234714121174610 0.234518336364553 0.227027810144072 0.232642344372910 0.224366501258844 0.226121588348648 0.222373474542652 0.218564647520080 0.228757640844886 0.225257865004752 0.218564647520080 0.227274576245303 0.225337656718002 0.226878399560471 3 3|0 +|/ 547721 548559 548185.6 546910 548800 + gene protein_coding_gene FALSE TRUE AT3G02580.1 STE1 (STEROL 1); C-5 sterol desaturase Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype. Identical to Delta(7)-sterol-C5(6)-desaturase 1 (EC 1.3.3.-) (Delta-7-C-5 sterol desaturase 1) (Delta(7)-sterol-C5-desaturase 1) (Protein STEROL1) (Dwarf 7 protein) (STE1) [Arabidopsis Thaliana] (GB:Q39208;GB:Q8L9C0;GB:Q9SWU4;GB:Q9SYS2); similar to delta 7-sterol-C5-desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02590.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96921.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.718476414766083 5.74683331724244 0.000134488464771566 1 6.49672885056751 13.4799796613151 0.718476414766083 0.157026246919955
AT2G04430_at 6.40308992207265 5.95741715823187 7.67912903293038 7.47375209806527 4.33438193978544 4.71162904072088 2.83733605243134 2.58400146580076 3.88135357566511 2.98748396521897 3.13294149950884 2.90973645313222 2.9024285986797 3.18790910220321 3.01926447146802 3.12965700649245 2.95103460318003 3.01574466570466 3.34157885894326 0.308290332263923 0.299051757925409 0.316605640889098 0.312285346528042 0.306339954749698 0.310312493010451 0.294867608803121 0.288226971192708 0.289507877252014 0.291034847051579 0.288226971192708 0.288226971192708 0.293495312478776 0.288226971192708 0.288226971192708 0.288226971192708 0.290294506575203 0.290657284075965 0.288226971192708 2 2 + 1539553 1540983 1540521.909 1538898 1541091 + gene protein_coding_gene FALSE TRUE AT2G04430.1 ATNUDT5 (Arabidopsis thaliana Nudix hydrolase homolog 5); hydrolase Identical to Nudix hydrolase 5 (EC 3.6.1.-) (AtNUDT5) (NUDT5) [Arabidopsis Thaliana] (GB:Q9SJC6;GB:Q6NNG2); similar to ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT2G04450.1); similar to Nudix hydrolase 5 (AtNUDT5) (GB:Q9SJC6); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) 0.61593964750585 5.74605311752173 0.000134641673326450 1 6.49580622911428 8.46487293041578 0.61593964750585 0.115739508457916
AT2G43080_at 6.98457911126118 7.00779336729794 7.52011703809405 7.47774367496187 7.31573864067544 6.9053095267325 5.92092054193449 5.86988292178057 5.86071050896505 5.71624427616732 6.08506974748146 6.14283376265245 5.3960930530721 6.27856348756318 5.90170750980618 6.19420677642736 5.82037864811734 5.94907222671229 5.73916758345738 0.215314345823550 0.214645746834806 0.212429475206629 0.215323125279947 0.216205997874086 0.228014863999251 0.210605286619130 0.22059075511582 0.235190239349822 0.224284214491603 0.212569016242801 0.214406332472270 0.214173461247412 0.225339539579826 0.217351416184283 0.210419141133177 0.216322951270705 0.211855605136849 0.212288587542735 2 2|0 +|/ 17923973 17925568 17924840.75 17922638 17925831 + gene protein_coding_gene FALSE TRUE AT2G43080.1 AT-P4H-1 (A. THALIANA P4H ISOFORM 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygen Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and other proline rich peptides. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G20270.1); similar to Os04g0346000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052511.1); similar to OSIGBa0111I14.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66506.1); similar to putative prolyl 4-hydroxylase [Oryza sativa (japonica cultivar-group)] (GB:BAD23054.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.528941548248274 5.74563866965346 0.000134723134478539 1 6.49531608171411 12.7467763233467 0.528941548248274 0.0720604482224247
AT3G07940_at 5.4140094956386 5.21957411361534 5.77600405803172 5.35718433178079 6.36936293452776 6.09896335630759 6.04758138874189 5.91721659069793 4.97934938902329 6.04543500753543 6.31015234022246 6.15690097657079 6.82612274916701 6.99992556643725 6.48042438308836 6.23946237784997 6.94021368279565 5.8648712770689 5.72941779638338 0.226328294379228 0.225760293794875 0.229126613946214 0.228209455585463 0.229570080792566 0.233977754706577 0.225901921482188 0.225949472705873 0.25029126913443 0.228331405963393 0.230182647972488 0.223418960422200 0.234039275005171 0.228670841177749 0.231913277697580 0.223180442821367 0.227343357998119 0.230157591104786 0.226954336538373 3 3|0 +|/ 2530539 2531328 2530858.889 2529210 2531539 + gene protein_coding_gene FALSE TRUE AT3G07940.1 zinc finger and C2 domain protein, putative similar to ZAC (ARF-GAP DOMAIN 12), ARF GTPase activator [Arabidopsis thaliana] (TAIR:AT4G21160.4); similar to Os05g0382000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055403.1); similar to Os01g0951100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045411.1); similar to putative zinc finger and C2 domain protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35631.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.57165418891227 5.7437605243285 0.000135092949250005 1 6.49309450716506 11.8059836503997 0.57165418891227 0.0953099237838507
AT1G01190_at 3.85305448195401 3.81590971421967 2.55374619028916 2.65659448192458 2.66434268979833 3.16917509858246 4.48360982181107 4.49486342271637 3.03263529281042 3.13409230307101 2.49388772308148 2.82451906798701 3.71735147892989 3.33504933222408 3.2543126030987 6.13387959757142 3.91651355986915 3.01061917691286 3.74762195977196 0.249340175218011 0.246217525034054 0.250881096859452 0.248745334935757 0.243424326539159 0.251656561555209 0.246743954927864 0.244458254453661 0.243634350073644 0.240361749014211 0.244856862425122 0.244694941159913 0.240361749014211 0.240361749014211 0.247084939546925 0.261113232054486 0.250651948293115 0.24097598257411 0.245286797884067 1 1 - 83078 83620 83348.273 83045 84864 - gene protein_coding_gene FALSE TRUE AT1G01190.1 CYP78A8 (cytochrome P450, family 78, subfamily A, polypeptide 8); oxygen binding member of CYP78A similar to CYP78A9 (CYTOCHROME P450 78A9), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G61880.1); similar to CYP78A6 (cytochrome P450, family 78, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46660.1); similar to Cytochrome P450 78A3 (GB:O48927); similar to cytochrome P450 monooxygenase CYP78A29 [Medicago truncatula] (GB:ABC59089.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.559955681392561 -5.7435522995224 0.000135134016162637 1 6.49284816864791 6.90668686400051 -0.559955681392561 0.0894108167972745
AT4G27640_at 4.0875670244462 4.27827063682189 4.69926617827406 4.23141839757171 5.39361160132767 4.89488818909403 5.26265937837792 4.86279508940648 3.45056983360928 3.66406908752817 4.84358606477095 4.18651898230556 4.9745905603697 4.82573390841494 4.6020833807981 4.53371247950479 5.18739952074521 4.78472631712473 3.59912552683771 0.278088908820635 0.278550751631669 0.275448892062480 0.272973529278078 0.285555955652072 0.287767171736474 0.283191536365568 0.275646914254745 0.281674656059614 0.288947303572398 0.272973529278078 0.285642413052199 0.272973529278078 0.274386652479001 0.276059760381998 0.272973529278078 0.297074900433537 0.296712382206805 0.279270038011981 4 4|0 -|/ 13800214 13801052 13800656.444 13797664 13803069 - gene protein_coding_gene FALSE TRUE AT4G27640.1 importin beta-2 subunit family protein similar to EMB2734 (EMBRYO DEFECTIVE 2734), lyase [Arabidopsis thaliana] (TAIR:AT5G19820.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06844.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.676506072533136 5.74328367109551 0.000135187015767067 1 6.49253035876186 8.87058392078798 0.676506072533136 0.14100142129194
AT4G02420_at 9.14538169552002 9.44362222308803 8.84905080649386 9.0504249430055 7.85941078030664 7.66432005434799 8.76437372034383 9.0762573750338 9.5420962164427 8.51681003454829 8.48681192190895 9.45917649694517 8.23751018411399 8.6729674923166 8.61225541234116 8.55224432682921 7.8367421119029 9.09369039735988 8.89792853563329 0.153257054356186 0.139970366045492 0.138297749606620 0.139564556246661 0.140146539375357 0.149335950529963 0.139968049979089 0.139861018870792 0.142554949142548 0.139704222845336 0.141192579209125 0.136963446245817 0.148688007002689 0.143666846772038 0.146010355041007 0.145263555687355 0.168476451362937 0.15115774636299 0.142300955681132 4 4 - 1064399 1064917 1064655.273 1064363 1066372 - gene protein_coding_gene FALSE TRUE AT4G02420.1 lectin protein kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G02410.1); similar to RLK (RECEPTOR LECTIN KINASE), kinase [Arabidopsis thaliana] (TAIR:AT2G37710.1); similar to receptor kinase Lecrk [Gossypium hirsutum] (GB:AAP47579.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.55914695501731 -5.74227538971149 0.000135386144430814 1 6.4913373630199 17.5338733940205 -0.55914695501731 0.0890568893907251
AT2G22200_at 2.60284561290993 2.67621454656454 1.81803420791940 1.71829584309151 1.53841479225831 1.81345218623606 2.60673840107245 2.71494004483367 1.64162080985038 2.73767941938500 2.01487571996104 1.93751851442321 2.16912305821992 1.71670257019185 2.40458176645702 2.24779910894792 2.27544377801745 2.32576373814102 2.26730844629907 0.231518193488941 0.232201964323210 0.217916743237025 0.227658292121165 0.216717731796673 0.216717731796673 0.227302446056875 0.243617375164786 0.222538751418871 0.220309341540645 0.226341252748181 0.219776216787093 0.219501155307276 0.220827413326512 0.216717731796673 0.216820596231901 0.222965398876680 0.228636497417018 0.219600597765948 2 2 - 9450541 9450947 9450753.091 9450208 9451503 - gene protein_coding_gene FALSE TRUE AT2G22200.1 AP2 domain-containing transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G39780.1); similar to DREB2 [Glycine max] (GB:AAQ57226.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.503597793676025 -5.74031382524062 0.000135774436058380 1 6.48901592692196 4.36212308284727 -0.503597793676025 0.055454206776405
AT1G48280_at 2.98035916436944 3.14042690378298 1.88521627189711 1.57771314001144 1.96181652014797 2.03516500185743 2.36158355246885 2.03353227709034 2.87658121082303 2.65913325689666 2.6384434958142 2.51292776304127 2.61219271437486 2.62697713839530 2.57635086034490 2.15440728624806 1.80807866211668 2.67497565650616 2.81425266288626 0.203041980076498 0.200843818581003 0.202630641894875 0.201133528344207 0.201822266397989 0.199890056176725 0.198893429251125 0.200503046402495 0.201893245661032 0.205578358949210 0.200882691535535 0.195799873982296 0.198842941316500 0.203022879587147 0.201097939204052 0.195799873982296 0.200437771042799 0.201147856709303 0.2007228805136 1 0|1 /|+ 17840452 17841178 17840833.5 17838756 17841385 + gene protein_coding_gene FALSE TRUE AT1G48280.1 hydroxyproline-rich glycoprotein family protein similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to Os12g0105300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065931.1); similar to Os08g0129600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060916.1); similar to unnamed protein product; contains similarity to pherophorin gene_id:T5M7.14-related [Medicago truncatula] (GB:ABE90672.1); contains domain TPR-like (SSF48452) -0.548387960356443 -5.73821778486225 0.000136190659050915 1 6.48653458679219 4.86390989094011 -0.548387960356443 0.0835654248462907
AT3G52240_at 8.13143705485894 8.11520793532524 7.86361992414129 8.11072730267203 8.19580999697781 8.57614389309007 6.94650729652959 6.96510153321827 6.73433098365184 6.33240018665577 6.67333712924238 6.86118050842356 6.83426779291046 7.07839936672615 6.31526670957699 7.0754025614263 7.4793350281758 7.16945476711545 6.44606654310823 0.188915742518668 0.186943757545840 0.185241707539059 0.181957129904012 0.192359371824484 0.192776310462589 0.191286315155168 0.20060174556354 0.211181793289701 0.189662185316783 0.190752242655080 0.184652373076843 0.193844304144029 0.183798176738917 0.207771592813645 0.184606598883750 0.184793337024582 0.192261915312001 0.182879297837344 3 3 - 19383904 19384442 19384195.091 19383692 19386858 - gene protein_coding_gene FALSE TRUE AT3G52240.1 similar to H0811D08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86113.1); similar to Os05g0445800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055684.1); similar to Os05g0446500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055688.1) 0.539288201357491 5.73660442226584 0.000136511959880590 1 6.48462411885805 14.5831175608124 0.539288201357491 0.078606651586431
AT3G04840_at 10.4903041956098 10.5863194695266 9.99083605165834 10.0742217952777 9.83661769450923 9.75853405646689 10.9641504440654 10.9285877335821 10.2017039594157 10.2457032816968 10.0619286001710 10.4688396491771 9.76217248208176 9.80606649583338 10.7962099080630 9.51949078923444 9.49546418024998 9.78389119783238 9.79876618033768 0.0865950560548936 0.0825010497606237 0.0885663756850993 0.0835870328841323 0.091250754708675 0.0941601950715184 0.0848986585762232 0.0840130425281509 0.098222632465881 0.084628190428031 0.0853242854176618 0.082396678301841 0.0889263302325489 0.0904868182729704 0.085690804034069 0.0865733507942349 0.0960541485259764 0.0868428287278172 0.085753908493723 3 3|0 +|/ 1330503 1331368 1330871 1329671 1331623 + gene protein_coding_gene FALSE TRUE AT3G04840.1 40S ribosomal protein S3A (RPS3aA) Identical to 40S ribosomal protein S3a-1 (RPS3AA) [Arabidopsis Thaliana] (GB:Q9CAV0); similar to 40S ribosomal protein S3A (RPS3aB) [Arabidopsis thaliana] (TAIR:AT4G34670.1); similar to 40S ribosomal protein S3a (S phase-specific protein BIS289) (GB:P49396); contains InterPro domain Ribosomal protein S3Ae; (InterPro:IPR001593) -0.473793977768814 -5.73498657812732 0.000136834964426835 1 6.48270787872486 20.3506042900772 -0.473793977768814 0.0265478917510659
AT1G62040_at 9.56648488901926 9.68492806028308 9.88696050873027 9.870989774797 10.3453866074267 10.1252742030123 9.29963994309784 9.2209793053565 9.58551263885667 9.39245501204877 10.0890539845886 9.69213560584697 9.81622847790739 9.86525674924222 9.74264076045529 10.0084651506773 9.925580357377 9.90685026511925 9.56181142631107 0.0863383829931078 0.0862031113848458 0.0915961566664082 0.0886705538260556 0.087594350157889 0.0885521463116413 0.0896223686684293 0.0893541258927013 0.101999840643336 0.0869820267635255 0.0862031113848458 0.0865657622423079 0.0926002694925007 0.0895604961431469 0.0913027858470749 0.0866962599879503 0.0889335892904558 0.0912578629343893 0.089402490004029 1 1|0 +|/ 22936890 22937890 22937446.5 22936566 22938104 + gene protein_coding_gene FALSE TRUE AT1G62040.1 ATG8C (AUTOPHAGY 8C); microtubule binding similar to ATG8D (autophagy gene 8-related), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G05630.1); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar to Os08g0191600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061171.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.490830725274332 5.73498506088756 0.000136835267727543 1 6.4827060814259 19.447098467119 0.490830725274332 0.0454316502477611
AT1G18740_at 7.55243298043201 7.58544589334246 8.151285522521 8.48537043936503 8.30820801553172 8.30526032109972 8.0265871944265 8.18455782315394 7.54050471151682 6.38475570199109 8.02622888773866 7.4346971353314 7.67532659377369 7.47009837419688 6.52187477673221 7.61626710600683 7.65223749203644 7.09324950874108 6.71771442502749 0.202313617053398 0.202313617053398 0.207156180758706 0.213688706887950 0.202313617053398 0.205252888527473 0.202313617053398 0.205262370637365 0.228530991443793 0.217173332721817 0.210839237531942 0.202313617053398 0.209878092353064 0.214306172195988 0.221980536501519 0.202313617053398 0.202313617053398 0.219202507746963 0.214669868611794 1 1 + 6464691 6464945 6464820.091 6463985 6466445 + gene protein_coding_gene FALSE TRUE AT1G18740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74450.1); similar to Protein of unknown function DUF793 [Medicago truncatula] (GB:ABE83157.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) 0.515265486632578 5.73165857365946 0.000137501967996731 1 6.47876458997067 15.2335130723164 0.515265486632578 0.0642091089484838
AT2G38710_at 8.58444214404148 8.62244580870826 9.37582324199605 9.45432406650863 9.18362699707133 9.3880256625768 8.85098500763117 9.02896705089619 8.06171421279322 8.54718734124342 8.6956067520913 8.74692682906129 8.86334577747503 8.70768362330274 8.6872371037797 8.74488368372763 8.99097153119875 8.94405481402426 8.5506013555192 0.128065115051080 0.124938205506356 0.126034532757432 0.129794187726409 0.121676774131050 0.121840556436732 0.122062484381638 0.136231587491738 0.141509900237826 0.123915452554984 0.121392703654269 0.121445264409324 0.127134295178979 0.125160418717505 0.130935665715769 0.123622596924507 0.125780607916493 0.127997765483187 0.125446949445700 2 2 - 16191598 16193745 16192207.182 16191447 16194251 - gene protein_coding_gene FALSE TRUE AT2G38710.1|AT2G38710.2 AMMECR1 family Identical to Uncharacterized protein At2g38710 [Arabidopsis Thaliana] (GB:Q9ZVJ2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP55119.2); similar to Os10g0573100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065469.1); contains InterPro domain AMMECR1; (InterPro:IPR002733) 0.494913891849784 5.73063923162514 0.000137706958440868 1 6.47755639653471 17.653124864521 0.494913891849784 0.0492713950426499
AT2G42790_at 9.39173985025526 9.4874368126283 9.80600078651127 9.95536678060125 10.1123597606360 9.78940222668493 8.96528501755582 8.84986384558085 7.8131959008113 8.37144221856437 8.06373311065962 7.65642676860023 8.82975344198118 8.48708257715946 7.94458308343564 8.24349763039868 9.0856421045648 8.64060557724066 8.03438788324755 0.140300661032538 0.139884004663448 0.138994126298579 0.141127990764252 0.147213685437287 0.138421576000653 0.142420697411284 0.140122438892623 0.159254821857159 0.142034171498482 0.141377522217269 0.144941769080335 0.140423841166784 0.145524647244904 0.140541944162923 0.138740314297754 0.136920874643870 0.141462375621686 0.142740820315273 2 0|2 /|- 17810210 17810947 17810537.8 17808552 17813126 - gene protein_coding_gene FALSE TRUE AT2G42790.1 CSY3 (CITRATE SYNTHASE 3); citrate (SI)-synthase Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. Identical to Citrate synthase 3, peroxisomal precursor (EC 2.3.3.1) (CSY3) [Arabidopsis Thaliana] (GB:Q9SJH7;GB:Q56YQ7); similar to CSY2 (CITRATE SYNTHASE 2), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58750.1); similar to CSY1 (CITRATE SYNTHASE 1), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58740.1); similar to Os02g0232400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046373.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); contains InterPro domain Citrate synthase; (InterPro:IPR002020); contains InterPro domain Citrate synthase I; (InterPro:IPR010953) 0.519053938158635 5.72938481448235 0.000137959669696199 1 6.47606932211433 17.7656439872048 0.519053938158635 0.0668205547734364
AT1G13000_at 7.95711633548429 8.2217514111013 8.19603846887903 8.06614716406644 8.44325198527831 7.95943901859689 6.38834605518469 6.75807138031785 6.6957087388729 5.9479826841929 6.42312364001543 6.84458699745225 6.53618538623142 7.0602226631504 6.12734924848467 6.6160720427928 6.25892028452419 6.47906713844675 5.79043855337785 0.197404008526541 0.198928617774070 0.198552621026576 0.207088668643454 0.198864763555967 0.194591110622426 0.202303188643907 0.194642582959601 0.198029536180288 0.191333980360633 0.200840594776003 0.191333980360633 0.199901815523714 0.202296357215418 0.195454751378200 0.197594026864389 0.19922978762685 0.194624380515231 0.194300733808235 1 1|0 -|/ 4436439 4437489 4437129.4 4436103 4439474 - gene protein_coding_gene FALSE TRUE AT1G13000.1|AT1G13000.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26440.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.616689398336246 5.72465808143034 0.00013891635169433 1 6.47046340199068 14.0927206860062 0.616689398336246 0.117074425296837
AT1G10740_at 6.22639860408035 6.14228219360509 5.74135498705905 5.94524921746339 7.22502312289005 6.34902377221693 8.59393268934356 8.2841164954322 8.24754860268501 7.90788423711113 7.92750217367409 7.39442702165765 7.82718669210105 7.95194820932182 7.5655620764663 7.27338545412784 7.78664388050512 7.52576975326031 8.2506619569737 0.218638234712748 0.213543008739243 0.242268940222956 0.221041973640226 0.214004393127499 0.217367108179503 0.212409726924115 0.209278274264977 0.229654470563073 0.214598795560666 0.219022975040484 0.209278274264977 0.214374710467116 0.217134953541326 0.216207165886517 0.209278274264977 0.209278274264977 0.22198455071349 0.21262041968511 1 1 - 3568445 3569055 3568857 3568170 3570761 - gene protein_coding_gene FALSE TRUE AT1G10740.1|AT1G10740.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23330.1); similar to Os05g0408300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055523.1); similar to Lipase precursor (Triacylglycerol lipase) [Contains: Lipase 86 kDa form; Lipase 46 kDa form] (GB:P04635); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) -0.737665747662638 -5.72427281977512 0.000138994638882299 1 6.47000630504416 14.7093816802093 -0.737665747662638 0.165265787249125
AT4G13050_at 6.40544703770568 6.10811739552888 5.22540708589608 5.36989682279702 5.76417857145585 5.03189873665688 6.71097128256927 6.24468472525472 6.62934402166387 6.38619663412531 6.59413727788331 6.7096734581837 5.85886353685251 6.16370366101937 6.68756735139693 6.05909491745022 5.47438960131086 5.59768283297052 6.70830181643355 0.173324483310096 0.171782949628380 0.187184029442291 0.177389480673018 0.172309635604222 0.187128612914473 0.175712332878669 0.178949764990099 0.189311361174250 0.174338648691095 0.173773845816113 0.180629637200753 0.174513574464633 0.17437083484503 0.175611194268817 0.173378777035486 0.179773751175232 0.175454023945644 0.173911363860505 4 4|0 +|/ 7618678 7619303 7619065.333 7617558 7619613 + gene protein_coding_gene FALSE TRUE AT4G13050.1 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative similar to ATFATA (ARABIDOPSIS FATA ACYL-ACP THIOESTERASE), acyl carrier/ acyl-ACP thioesterase [Arabidopsis thaliana] (TAIR:AT3G25110.1); similar to acyl-ACP thioesterase; oleoyl-[acyl-carrier protein] hydrolase [Brassica napus] (GB:CAA52069.1); contains InterPro domain Acyl-ACP thioesterase; (InterPro:IPR002864) -0.725467441918662 -5.72347802788044 0.000139156293320232 1 6.46906323393516 12.2164518257536 -0.725467441918662 0.160758292351726
AT2G41370_at 3.59947247396988 3.70995752686694 2.57078784337666 2.18569892960836 2.67189185598866 2.62190290592646 3.14319471792758 3.77320690853880 2.72733506746755 3.27064156574427 2.66016240092293 2.53132210401588 2.44533558446929 2.82230096833409 2.40625963487576 2.69911560548298 3.22551511966576 2.56704713329413 2.75255742782564 0.184232577549425 0.185049570362666 0.178002069984867 0.179515425721426 0.182498623707144 0.179476525150458 0.191212099749610 0.17824634613733 0.189193090140470 0.178969003744183 0.179249795136898 0.181138101640696 0.182156668987113 0.181183469627674 0.180956337066277 0.181664505181652 0.18690879200739 0.182827080108478 0.181203719156612 2 2 - 17245210 17245636 17245490.364 17244823 17247518 - gene protein_coding_gene FALSE TRUE AT2G41370.1 BOP2 (BLADE ON PETIOLE2); protein binding Encodes a cytoplasmic and nuclear-localized NPR1 like protein with BTB/POZ domain and ankyrin repeats. Interacts with BOP1 and appears to be genetically redundant with BOP1.bop1/bop2 double mutants have longer leaves, often with leaflets on the petiole, and asymmetric flowers with extra organs. similar to BOP1 (BLADE ON PETIOLE 1), protein binding [Arabidopsis thaliana] (TAIR:AT3G57130.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28327.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.645549945615323 -5.72151623411385 0.000139556164842654 1 6.4667349591517 5.82775264822296 -0.645549945615323 0.129492385851224
AT1G22660_at 5.05193097109991 5.20548432027997 4.7703237865701 4.65433023577244 4.78577020327236 4.43315728334582 5.20416211581546 5.47431520577903 4.76140936735452 4.92693588428862 4.19285177959706 4.43563542480457 3.89443998122994 4.1122951035309 4.37800545599334 4.30505823206208 4.49400453509748 4.80742405135652 4.85722824084743 0.219274419007124 0.214532516136642 0.216152558776556 0.220278579218195 0.221185160044935 0.225080343002940 0.213813826381247 0.211811378605649 0.236518008802153 0.214021638410312 0.215765869305359 0.221166415978886 0.219116040667958 0.218686163665827 0.226013106905138 0.211811378605649 0.224269642696368 0.219148435077411 0.21194328001393 1 1|0 +|/ 8019998 8020883 8020288.25 8017386 8021701 + gene protein_coding_gene FALSE TRUE AT1G22660.1|AT1G22660.2 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G17580.1); similar to tRNA nucleotidyltransferase (GB:AAB03077.1); contains InterPro domain Nucleotidyltransferase/Poly(A) polymerase; (InterPro:IPR012277); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646) -0.547068976520642 -5.72036938897535 0.000139790492647111 1 6.46537355522712 9.5354286742198 -0.547068976520642 0.0837755640267345
AT3G50270_at 8.59210121812324 8.91704612021688 7.7271398577215 7.50395853189582 8.55104641157826 8.4918557969545 9.11606789391066 8.94410865538605 9.00979868786954 8.77950584863803 8.67093747017832 8.97805649249961 8.5476570273388 8.51993682481106 8.86647643247479 8.80447712747894 8.41640435455898 8.36031672001549 8.86570181449426 0.166059701747262 0.158364303745550 0.167230576457276 0.161549849790543 0.167817152134475 0.168526947778172 0.166738234610367 0.16487301937105 0.168440385618665 0.167443243111418 0.166635257234240 0.162736601447748 0.164966141475954 0.169045098629227 0.168113002881532 0.161036425153434 0.169708694577817 0.170619274983031 0.166427113081387 3 3 + 18647672 18648133 18647907.273 18646902 18648323 + gene protein_coding_gene FALSE TRUE AT3G50270.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50280.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.531650066601398 -5.71930873479238 0.000140007582739156 1 6.46411425877217 17.2456830223084 -0.531650066601398 0.0751289676733329
AT3G50880_at 6.16691935571635 6.91331810389771 7.2305052505364 7.23555911591136 7.4156799436265 7.1298667818017 6.21475048738083 6.50664442383403 4.94711901789726 4.9796852755541 5.3977319237119 5.22492943005401 5.56124348996691 5.80258117060166 5.74922415196292 6.08576833933804 5.26172183499683 5.57848548373475 5.0918406963356 0.218482575056041 0.225427480989416 0.229740319380944 0.219978410921983 0.218044898044954 0.227347713086842 0.220370137544757 0.217408690702605 0.225621822740094 0.224312265862454 0.219234614366624 0.218189730330892 0.224872836790240 0.219961829748515 0.227603234192755 0.221759432033043 0.229138165548529 0.220092646912179 0.223279150120877 3 3 + 18924742 18925244 18924959 18924467 18925941 + gene protein_coding_gene FALSE TRUE AT3G50880.1 HhH-GPD base excision DNA repair family protein similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G19480.2); similar to Os05g0579100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056417.1); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.689495205855991 5.71865310723097 0.000140141953356249 1 6.46333574319052 12.1461182951589 0.689495205855991 0.147251914109324
AT3G62910_at 8.83214582085434 8.6707955710093 7.73641090869108 7.39133767709662 8.29172032147093 8.11564687609712 8.71596164920506 8.38067658862632 8.36677578070113 8.79591438150959 7.92451087544175 8.87123641249457 8.04680802735577 8.14661776086045 9.03579292902902 8.42916873483684 8.13602328606087 7.55576842000166 8.72832839512783 0.160429957423412 0.160429957423412 0.162071017851065 0.169252611478131 0.161880391733819 0.172657552532906 0.167763103477541 0.171970790448741 0.176124226811931 0.160806500905301 0.17479714919108 0.164469405601629 0.164921298591789 0.165962746501463 0.162925466888572 0.167285770728416 0.176278035693188 0.166169527950782 0.162957100364042 3 3|0 -|/ 23268657 23269697 23269270.778 23268529 23271402 - gene protein_coding_gene FALSE TRUE AT3G62910.1 APG3 (ALBINO AND PALE GREEN); translation release factor Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT2G47020.1); similar to Os11g0657100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068394.1); similar to peptide chain release factor 1 [Trichodesmium erythraeum IMS101] (GB:YP_722610.1); contains InterPro domain PCRF; (InterPro:IPR005139); contains InterPro domain Protein chain release factor, RF-1/RF-2; (InterPro:IPR012086); contains InterPro domain Peptide chain release factor 1; (InterPro:IPR004373); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352) -0.564107337468774 -5.71512732377155 0.000140866921395296 1 6.45914778823931 16.7161270890678 -0.564107337468774 0.0929558690021068
AT4G05090_at 5.85509034089271 6.24507425234547 4.70613533933501 4.67286130517911 5.99347903832913 5.05099944324909 7.15017296170825 6.87227310748143 6.87622564899863 6.93689436911544 6.90904660272631 7.0328146298011 6.34949874462235 6.77432932118286 7.18840169647262 6.73181938452999 5.8670064124324 6.77337704107126 6.73361839300239 0.217523585197407 0.206035060240585 0.218916424656553 0.210735714738038 0.213093800759671 0.220694340049640 0.209734221623429 0.208385433577815 0.221420391879347 0.211088183519151 0.204633427104268 0.204633427104268 0.210407908663946 0.217331417483951 0.218995590335393 0.211650614682442 0.220473115705743 0.216918217287663 0.211385620488500 4 4|0 +|/ 2610665 2611590 2610981.8 2609140 2611760 + gene protein_coding_gene FALSE TRUE AT4G05090.1 inositol monophosphatase family protein Identical to Putative PAP-specific phosphatase, mitochondrial precursor (3'(2'),5'- bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) [Arabidopsis Thaliana] (GB:Q9M0Y6;GB:Q9S9S9); similar to SAL2, 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT5G64000.1); similar to Os07g0558300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059974.1); similar to Os07g0558200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059973.1); similar to putative 3(2),5-bisphosphate nucleotidase [Oryza sativa (japonica cultivar-group)] (GB:BAC84032.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) -0.785204979342254 -5.71426282450569 0.000141045288128277 1 6.45812059056902 12.5943604899702 -0.785204979342254 0.183036763295678
AT3G32940_at 5.94898204417988 5.87212826556092 6.87791892528398 6.50204164831285 6.91343555511804 6.75200288096908 5.85407610462265 5.34818585706579 5.4683521217908 5.59850132551714 5.34234411995579 5.70998000771953 5.79003981132997 5.56086051457739 5.33397431016098 6.11653177176364 5.91730621386357 5.56055315685902 5.30649274069793 0.190397556114933 0.186233409522774 0.182346457175566 0.182059731426731 0.183450538972193 0.185322424535865 0.18085245961676 0.184595635473931 0.197503041618284 0.184190556816219 0.181394018113861 0.182816682696685 0.184869169126898 0.185056620059891 0.185272028459638 0.182921050170251 0.194628130531180 0.187084936166663 0.184629514144065 3 3 - 13494808 13495350 13495060.727 13494658 13497500 - gene protein_coding_gene FALSE TRUE AT3G32940.1 similar to nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G51300.3); similar to Os08g0100700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060755.1); similar to putative KH domain protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03549.1); contains domain RNA-BINDING PROTEIN RELATED (PTHR11208); contains domain Positive stranded ssRNA viruses (SSF88633); contains domain Eukaryotic type KH-domain (KH-domain type I) (SSF54791); contains domain ZN FINGER SPLICING FACTOR 1 (PTHR11208:SF6); contains domain no description (G3D.3.30.70.210) 0.607086680086893 5.71328118339402 0.000141248115781089 1 6.45695404348423 11.8207118106128 0.607086680086893 0.113370708494481
AT1G70610_at 8.74669473943319 8.78216433408512 8.51065138118655 8.26981709471143 8.98297232668877 8.27926297569637 10.2589998500724 10.1126357627485 9.69270406190539 9.9529332472975 9.57983445513701 9.53607607395621 9.34335040310942 9.62701781443877 8.92221140921433 9.59646067924905 9.1982530892427 9.5424687422247 9.60986851993675 0.118621455785542 0.117536152301375 0.120724878489869 0.120755139957460 0.114168494735630 0.126867897847445 0.121200278274378 0.122785471242526 0.125218874272485 0.117007525846228 0.115038703257712 0.114168494735630 0.114168494735630 0.120954662718955 0.121879097021057 0.115467034936356 0.129419241417112 0.124776999885349 0.114168494735630 1 1|0 +|/ 26629005 26629515 26629372.5 26625624 26630142 + gene protein_coding_gene FALSE TRUE AT1G70610.1 ATTAP1 (Arabidopsis thaliana transporter associated with antigen processing protein 1); ATPase, coupled to transmembrane movement of substances member of TAP subfamily similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to PREDICTED: similar to KIAA1520 splice [Gallus gallus] (GB:XP_415125.2); similar to Os01g0911300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045160.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.649036960036186 -5.71309613240639 0.000141286385996926 1 6.45673411628531 18.5779219879285 -0.649036960036186 0.131326547497656
AT1G52930_at 5.30942825679973 6.02432006485459 4.60996071287986 5.13322962602489 4.53398364263422 4.33479477283497 5.81409408272296 6.36637166935541 3.35152618302059 3.32341904582262 2.8728291132516 3.21623361908908 2.78538541462386 2.93934323597542 3.92871836242163 3.13888006031976 3.08356773338554 2.66861157885595 3.61060272624885 0.26908459352603 0.266500499256537 0.267514902738278 0.263966687412986 0.263298947536370 0.281248268823887 0.269324735747254 0.267302025077321 0.274129037765191 0.272713908800576 0.264133783951838 0.263559922130710 0.265628488526905 0.2662039350457 0.264641060048078 0.263298947536370 0.268273936047449 0.271325400072611 0.265258015470445 1 1|0 +|/ 19715745 19716711 19716293.5 19714905 19716898 + gene protein_coding_gene FALSE TRUE AT1G52930.1 brix domain-containing protein similar to brix domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G15460.1); similar to hypothetical protein UM05180.1 [Ustilago maydis 521] (GB:XP_761327.1); similar to Os02g0591800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047289.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.787440587565006 -5.71244771000402 0.000141420572803091 1 6.45596343876165 8.51962891589885 -0.787440587565006 0.183924414100281
AT4G02550_at 5.28536532683519 5.21763066918702 5.59856968905464 5.59021072211139 5.02962576988327 4.30331038070769 3.55062203084359 2.97967699038505 3.56926069127841 2.60825323373048 3.47982955795210 3.59981786329209 3.04064632945934 3.97102801085157 4.01116294883703 3.48532812951171 4.07785249322005 3.55516077136286 3.05937307813083 0.262240796313262 0.247589213649102 0.261368868578438 0.247229407262183 0.247467689247883 0.253083739204267 0.241489108507420 0.249180584656018 0.256254473413844 0.241701876917600 0.243884774412249 0.237789898412355 0.260006622170557 0.237789898412355 0.237789898412355 0.238105893762355 0.246353545805224 0.240203866091357 0.249452585803064 4 0|4 /|- 1120627 1121102 1120888.5 1120421 1122223 - gene protein_coding_gene FALSE TRUE AT4G02550.1|AT4G02550.2|AT4G02550.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02210.1); similar to hypothetical protein MtrDRAFT_AC152405g9v1 [Medicago truncatula] (GB:ABE86214.1) 0.722873157403736 5.71235194787291 0.000141440401658216 1 6.45584961505553 8.06015924609635 0.722873157403736 0.160313467422798
AT1G30620_at 4.92372097938323 5.69466734669698 6.37855091290094 6.7409874434898 4.38765672176191 4.69656261249661 2.77428506455550 3.61034414785988 2.71245642815029 2.6213850998802 3.19251865764412 3.20851150604841 3.17448568892166 3.12219978600584 3.11028549151641 3.03860755606235 2.54311889512848 3.0996747831658 2.51863760537414 0.277891145932358 0.285851388863903 0.282688946867318 0.287499029615382 0.27604337641193 0.28472482938912 0.267484504284488 0.267484504284488 0.273025795889098 0.267484504284488 0.269465687510902 0.267484504284488 0.269949948573396 0.267484504284488 0.279781156320146 0.269896124029999 0.286745528657467 0.267484504284488 0.269158479477814 1 1|0 +|/ 10856932 10857924 10857381.4 10854531 10858226 + gene protein_coding_gene FALSE TRUE AT1G30620.1|AT1G30620.2|AT1G30620.3 MUR4 (MURUS 4); catalytic|MUR4 (MURUS 4) encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. Identical to UDP-arabinose 4-epimerase 1 (EC 5.1.3.5) (UDP-D-xylose 4-epimerase 1) (MUR4) [Arabidopsis Thaliana] (GB:Q9SA77;GB:Q570B0;GB:Q8H7B9); similar to NAD-dependent epimerase/dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G20460.1); similar to DUR (DEFECTIVE UGE IN ROOT), catalytic [Arabidopsis thaliana] (TAIR:AT5G44480.1); similar to UDP-galactose 4-epimerase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC24804.1); similar to Putative UDP-arabinose 4-epimerase 3 (UDP-D-xylose 4-epimerase 3) (GB:Q9SUN3); similar to Putative UDP-arabinose 4-epimerase 2 (UDP-D-xylose 4-epimerase 2) (GB:O64749); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) 0.871933644565919 5.71204812695104 0.000141503331531655 1 6.45548848003063 7.74018107365803 0.871933644565919 0.213365675878757
AT3G04110_at 6.84186513533546 7.80458194445598 5.9356856513926 5.75486265378497 7.21293814967206 6.99060782423014 7.7609399684484 6.95308484114819 5.12955314606447 5.86131288520652 4.60532708431835 4.33487761860193 4.90284318873539 5.34000675475722 4.24036941253934 4.56470031582751 5.35339664133289 4.58319766099532 6.03140557911111 0.262260199622505 0.271048910181162 0.267855195146338 0.272859259264858 0.266287757222586 0.264009479426017 0.270842394021743 0.267502397189480 0.26934622642246 0.274945083007222 0.262852525747612 0.262034515731496 0.274554259926869 0.269714288478425 0.266490880941362 0.27089686490863 0.272443932866496 0.267769381124291 0.268865734622761 3 3 + 1079604 1080202 1079929.364 1077335 1080412 + gene protein_coding_gene FALSE TRUE AT3G04110.1 GLR1 (GLUTAMATE RECEPTOR 1) putative glutamate receptor (GLR1) Identical to Glutamate receptor 1.1 precursor (Ligand-gated ion channel 1.1) (AtGLR1) (GLR1.1) [Arabidopsis Thaliana] (GB:Q9M8W7;GB:Q9ZT37); similar to ATGLR1.3 (Arabidopsis thaliana glutamate receptor 1.3) [Arabidopsis thaliana] (TAIR:AT5G48410.1); similar to ATGLR1.2 (Arabidopsis thaliana glutamate receptor 1.2) [Arabidopsis thaliana] (TAIR:AT5G48400.2); similar to ATGLR1.4 (Arabidopsis thaliana glutamate receptor 1.4) [Arabidopsis thaliana] (TAIR:AT3G07520.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.9000475523663 -5.70856176652996 0.000142227593845701 1 6.45134325945495 12.1141609567747 -0.9000475523663 0.223071508821819
AT1G79590_at 8.98744638589925 8.9970118638621 9.39255607089911 9.31629231255331 9.53581702432342 9.58950025390397 8.83594356505566 8.74486913358045 8.15780111065216 8.22930556460673 8.74471603656186 8.07513030984665 8.82071423607652 8.69188780783106 8.54785892225727 8.49681708039697 8.58368394208496 8.90192523621763 8.32364306340241 0.128483568628955 0.126872812049453 0.129606538469024 0.130083669095848 0.130333919445229 0.134312472592458 0.130281341679028 0.126872812049453 0.143988009567213 0.129220090159108 0.134102592227503 0.133407217109279 0.128345906085784 0.133301266690601 0.129863846839867 0.129892541431185 0.129919946441414 0.131380790065270 0.136428839546997 1 1|0 +|/ 29952077 29953156 29952575.778 29951130 29953667 + gene protein_coding_gene FALSE TRUE AT1G79590.1|AT1G79590.2 SYP52 (SYNTAXIN OF PLANTS 52) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. Identical to Syntaxin-52 (AtSYP52) (SYP52) [Arabidopsis Thaliana] (GB:Q94KK7;GB:Q9MA16); similar to SYP51 (SYNTAXIN OF PLANTS 51) [Arabidopsis thaliana] (TAIR:AT1G16240.2); similar to Os02g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045701.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM52319.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.469074397587967 5.70762646024766 0.000142422567068239 1 6.45023082821867 17.5973087142411 0.469074397587967 0.0226193106764086
AT1G74890_at 2.72670129854057 3.06009620132935 1.69304340669087 1.88694290369461 2.11797148710996 2.1260189256468 3.73736451887732 3.85194549591542 3.33500763086420 3.80392909667890 4.59858498257188 6.23528200591634 4.01092566055237 3.64792881093372 6.07743286069461 5.00034783299427 2.24728257526614 3.72487426065481 5.1541035546691 0.259698349026788 0.259475706509816 0.273370568704825 0.269734668491709 0.261647826136766 0.267430068858168 0.257536071773144 0.263837297803889 0.26851174880064 0.257536071773144 0.260573957672946 0.271591752876421 0.263837682433105 0.266249179158001 0.269246432061923 0.269972610024916 0.268200623514046 0.259453935262972 0.270787711234688 1 1|0 -|/ 28135306 28136310 28135880.4 28135251 28136371 - gene protein_coding_gene FALSE TRUE AT1G74890.1 ARR15 (RESPONSE REGULATOR 15); transcription regulator Encodes a nuclear response regulator that acts as a negative regulator in cytokinin-mediated signal transduction. Transcript accumulates in leaves and roots in response to cytokinin treatment. Identical to Two-component response regulator ARR15 (ARR15) [Arabidopsis Thaliana] (GB:Q7G8V2); similar to ARR7 (RESPONSE REGULATOR 7), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT1G19050.1); similar to type-A response regulator [Catharanthus roseus] (GB:AAQ10675.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.52144020912641 -5.70674912322896 0.000142605714893398 1 6.44918720246925 6.92026676360999 -0.52144020912641 0.0696408473074997
AT1G35720_at 10.5505376023557 10.5402307010751 10.3904434573413 10.2620426229879 10.6216140248051 10.3058308648532 10.6101250328266 10.4544535069327 8.47079164395577 9.66827512678051 10.2492084812156 10.6046503972613 10.339401204897 10.1902594834041 10.6828135395237 9.59869032799426 10.5323533089284 10.6316100463636 9.40725885590244 0.135806105480738 0.134029459630266 0.138774048713867 0.137687883416893 0.137959321917757 0.140499521465195 0.138317542512581 0.134192576681529 0.159329309632961 0.139512652439662 0.148337193584119 0.133452292886326 0.133452292886326 0.153181702045156 0.135224721354823 0.140519563098214 0.133541186053107 0.133823117139659 0.147727282968067 1 1 + 13227555 13228119 13227789.091 13226409 13228407 + gene protein_coding_gene FALSE TRUE AT1G35720.1 ANNAT1 (ANNEXIN ARABIDOPSIS 1); calcium ion binding / calcium-dependent phospholipid binding Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion. similar to ANNAT2 (ANNEXIN ARABIDOPSIS 2), calcium ion binding / calcium-dependent phospholipid binding [Arabidopsis thaliana] (TAIR:AT5G65020.1); similar to annexin-like protein (GB:AAC49472.1); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Annexin, type plant; (InterPro:IPR009118) 0.513830419092467 5.70451758895323 0.000143072688780310 1 6.44653208899888 20.2347756721029 0.513830419092467 0.0648771835984546
AT3G15570_at 8.70084372165047 8.78419980390783 8.24424465672972 8.32010416817312 8.93106452021371 8.93262684260593 9.55591940989468 9.59335801526346 9.9056004225383 9.83396365366844 9.4453608558139 9.67530721782995 9.45024245420212 9.44997380298644 9.43228222623132 9.66360149309558 9.13182517108713 9.36520365772613 9.76689964900381 0.099129673276353 0.101882870373622 0.109988009281035 0.102494641503698 0.101177682133733 0.100747152767537 0.103289346445018 0.103428369490032 0.108443184515736 0.102719216269207 0.101057503702684 0.102068256789239 0.0985434851392717 0.102499745931085 0.105532043132454 0.101671784172858 0.102042778784099 0.107440716390318 0.0985434851392717 3 0|3 /|- 5270337 5270777 5270581.3 5269856 5271929 - gene protein_coding_gene FALSE TRUE AT3G15570.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G52770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77355.1); contains InterPro domain NPH3; (InterPro:IPR004249) -0.467666744640213 -5.70435567767168 0.000143106633880573 1 6.44633940993452 18.5264014014424 -0.467666744640213 0.0205541971213727
AT1G48650_at 7.92072275588364 8.16028280481218 7.97637630055567 8.09705235941087 8.02671443789492 7.8361044574081 9.12083800826962 9.15996937791128 8.42463743588269 8.1505803319606 7.39550029038861 7.97120919611307 7.78259683130671 8.00660536717777 7.71593301293938 8.35956916631913 7.8767199653315 7.88724474025592 8.24675608078184 0.140345933461334 0.141451559288320 0.143929058448332 0.138402649607548 0.143106646778347 0.146404930505411 0.144257556929603 0.140322585490480 0.151888444003788 0.135199688200168 0.146933099439854 0.144143859189577 0.142349851027275 0.135150852605750 0.14155076185425 0.135150852605750 0.153170255847270 0.139925787869800 0.137603898025783 1 1 - 17993391 17993708 17993562.636 17992826 17998994 - gene protein_coding_gene FALSE TRUE AT1G48650.1 helicase domain-containing protein similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G04895.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35920.1); similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G01130.1); similar to putative helicase [Oryza sativa] (GB:AAL58955.1); similar to putative DEAD/H box polypeptide 36 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52491.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98878.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.50298015477391 -5.70425425120928 0.000143127902559644 1 6.4462187071563 16.3614643648203 -0.50298015477391 0.0573474948870025
AT3G60640_at 6.31754271148387 6.656921758564 7.23469580724819 7.44830027953761 7.9529957135516 7.38840371223452 6.29182454208592 5.36877970216852 5.07316849004155 5.76636252976486 6.0984408408924 5.53560243996948 5.89306609887328 5.93456270640457 5.34439974138802 6.31554750641731 6.98306126708923 5.52246721308454 6.0768440114558 0.259056321575942 0.241773508147315 0.256658381190027 0.249464006641201 0.246460867521493 0.246888518242602 0.246196824740214 0.241773508147315 0.256490274874884 0.244469808741919 0.241773508147315 0.249418805928443 0.255054848041610 0.250465440307005 0.245124971958671 0.241773508147315 0.245910950698104 0.261895893181185 0.241773508147315 3 3|0 +|/ 22427099 22427920 22427644.625 22426816 22428133 + gene protein_coding_gene FALSE TRUE AT3G60640.1 ATG8G (AUTOPHAGY 8G); microtubule binding similar to ATG8F (AUTOPHAGY 8F), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G16520.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein [Cicer arietinum] (GB:CAD33929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.830966749622428 5.70365594510544 0.000143253433233583 1 6.44550665436615 12.6285256052854 0.830966749622428 0.199694952881439
AT2G46400_at 6.68902252368275 7.29784196535008 9.12008531820245 9.1379417032977 6.27284651322048 6.24496029316749 3.72161281449247 4.4110078611924 4.66323309545237 3.91737308656869 3.37705967471333 3.05990617067696 2.93532470604972 3.45463281749638 3.43919915990995 3.56046603848239 3.08092222010176 3.60431963641386 3.53968837134575 0.306868161657171 0.307063887088845 0.319589516074931 0.317174015882976 0.313383714651469 0.317010433662908 0.301661262589439 0.310717865471052 0.302876790043155 0.303452903293531 0.303487003107015 0.308808569855796 0.313755967419927 0.302625377777595 0.301661262589439 0.301661262589439 0.32838236709015 0.310187680015668 0.301661262589439 2 2 - 19050790 19051406 19051042.636 19050487 19051899 - gene protein_coding_gene FALSE TRUE AT2G46400.1 WRKY46 (WRKY DNA-binding protein 46); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 46 (WRKY DNA-binding protein 46) (WRKY46) [Arabidopsis Thaliana] (GB:Q9SKD9); similar to WRKY53 (WRKY DNA-binding protein 53), transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to putative WRKY transcription factor 30 [Vitis aestivalis] (GB:AAR92477.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.718983892158772 5.70351379275267 0.000143283275475453 1 6.44533746739857 10.2889533677938 0.718983892158772 0.159268886645995
AT3G61630_at 4.58313645405303 5.06421414256333 3.98926485736123 4.78301980317341 6.14653168410722 5.84175146754561 2.91578343454752 2.94895227618545 2.99159036718374 2.30386460159605 2.63684182371565 2.75838016913016 2.60557313390892 2.47381378320694 2.75260380115586 2.66607667112533 3.17317391810806 3.04614979703401 2.46147582794236 0.216606035852942 0.212095584043567 0.228346165583926 0.215798832554062 0.222028958880851 0.224686515127587 0.203774144892311 0.208249237657657 0.209863328333605 0.207986142192437 0.207557669282286 0.206179744049984 0.218781627385366 0.205609392343133 0.216438131767013 0.206788930756664 0.209252027667097 0.219212267448944 0.206262052515637 3 3 + 22816605 22817154 22816862.545 22816155 22817502 + gene protein_coding_gene FALSE TRUE AT3G61630.1 CRF6 (CYTOKININ RESPONSE FACTOR 6); DNA binding / transcription factor CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. similar to CRF5 (CYTOKININ RESPONSE FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G46310.1); similar to Pathogenesis-related genes transcriptional activator PTI6 (PTO-interacting protein 6) (GB:O04682); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.745276707237633 5.70177079599724 0.000143649724130294 1 6.44326269350806 7.20894188298235 0.745276707237633 0.16915806219191
AT4G24750_at 8.80354766954936 8.76452757562107 8.06586607383427 7.98133131981925 8.95062347326565 8.4638385156552 9.22465890900394 9.05409454103977 9.4245492993057 9.32606949423566 8.91990006463375 9.23973570597062 8.5602418383345 8.68610600647035 9.31115503204493 8.73908995474382 8.33731962948895 8.7569304009831 9.26713220843827 0.14049378871348 0.138404047100150 0.160247529420911 0.156968988201671 0.142951254404454 0.151532821345174 0.155954203390941 0.141490921216251 0.150899986363178 0.146948058373029 0.139149467686094 0.137011858974034 0.147430742663927 0.141449003022705 0.1417787074495 0.138400446134294 0.152217821501087 0.151027932933933 0.142622964132405 4 4|0 -|/ 12758474 12760232 12759597.286 12758224 12760918 - gene protein_coding_gene FALSE TRUE AT4G24750.1 similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08920.1); similar to Os09g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062759.1); similar to Os03g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049793.1); similar to Os02g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047318.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.558366416534697 -5.70161724970778 0.000143682053606833 1 6.44307989391417 17.7425910912620 -0.558366416534697 0.0907045002705927
AT4G19820_at 1.55878619072173 1.37500452705110 0.839265920504182 0.535795882408263 0.495107845587542 0.822560559766441 1.31702020472600 1.61179397850450 1.79729889001516 1.42051812492833 1.41309107655875 1.64157677991584 1.61276777784155 1.37347811307968 1.54056770769309 1.65386557078566 1.00953215971342 1.68119964764998 2.31249485650121 0.213049200695956 0.217089952594395 0.217443481427551 0.224045312710792 0.212061844568472 0.216347581800023 0.214495792886658 0.210614760816829 0.217098234518104 0.216846305486046 0.211782820422812 0.213501294347618 0.217501022503774 0.216318784953336 0.212312273805787 0.213713887366051 0.220296122822884 0.222781074092271 0.217484274682612 4 4 - 10767448 10768046 10767760 10767446 10768624 - gene protein_coding_gene FALSE TRUE AT4G19820.1 glycosyl hydrolase family 18 protein similar to glycosyl hydrolase family 18 protein [Arabidopsis thaliana] (TAIR:AT4G19810.1); similar to chitinase/lysozyme [Nicotiana tabacum] (GB:CAA55128.1); contains InterPro domain Chitinase II; (InterPro:IPR011583); contains InterPro domain Glycoside hydrolase, family 18; (InterPro:IPR001223) -0.572573054755522 -5.70045741284149 0.000143926510107031 1 6.44169895159597 2.73651546097687 -0.572573054755522 0.0978924546619864
AT4G35310_at 9.38336252878597 9.4276026252340 9.56171488871608 9.65865146536312 9.44567691583047 9.3776604197048 8.91553597441924 8.93646207173876 8.78474991793838 7.98225637286402 8.99952726293496 8.92112652100282 8.91022063157896 8.91862631255867 8.62131000361927 8.7007171784924 8.9213879517331 9.01821331991905 8.08869316134354 0.113469371669135 0.109701330987915 0.112903996262404 0.112742228908985 0.115759359010319 0.112010351102118 0.114743264494545 0.111225843695636 0.114976999417742 0.124122208361229 0.110618602211194 0.110640960088837 0.111464763829694 0.111417651873990 0.108262510313183 0.110298339514506 0.111757319641470 0.108963891169264 0.121892977173987 4 4|0 +|/ 16803759 16804371 16804069.4 16801992 16805000 + gene protein_coding_gene FALSE TRUE AT4G35310.1 CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 5 (CPK5) similar to CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6), anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G17290.1); similar to CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G10660.1); similar to CPK1 (calcium-dependent protein kinase isoform AK1), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G04870.1); similar to putative calcium dependent kinase 6 [Brassica rapa subsp. pekinensis] (GB:AAZ32752.1); similar to calcium dependent kinase 5 [Brassica oleracea var. alboglabra] (GB:AAZ32751.1); similar to putative calcium dependent kinase 6 [Brassica napus] (GB:AAZ32753.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.468171559686858 5.69973573401354 0.000144078840490733 1 6.44083957444816 17.9191455104467 0.468171559686858 0.0221739900289210
AT1G32100_at 2.20022069610028 2.42280635263116 3.59018509936042 3.53153469685663 2.86985433691086 3.50970889153376 3.39611547296842 3.59406150397171 3.31012160891673 2.89307861870812 4.14470814148789 4.49602341736225 4.01370723077209 3.76417223835462 4.52951989563449 4.31667931222724 5.0428442560117 3.71499405662358 4.21578293683492 0.24820280261719 0.235309913957953 0.227698101940194 0.228788370006474 0.239147497290074 0.228890968814224 0.225033105897200 0.225678365778650 0.226195625530298 0.229412977159005 0.226170357429750 0.225833377603066 0.226506941001117 0.232516246106383 0.23179209206911 0.226641825532362 0.235487499375157 0.234160295969252 0.230515828610642 1 1|0 -|/ 11546493 11547226 11546894.1 11546318 11547974 - gene protein_coding_gene FALSE TRUE AT1G32100.1 pinoresinol-lariciresinol reductase, putative encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. similar to pinoresinol-lariciresinol reductase, putative [Arabidopsis thaliana] (TAIR:AT4G13660.1); similar to Isoflavone reductase homolog (GB:P52581); contains InterPro domain NmrA-like; (InterPro:IPR008030) 0.625928215076754 5.69306633584423 0.000145494757256068 1 6.43289323944714 7.0022236096479 0.625928215076754 0.122561404193541
AT3G46970_at 11.5596776189011 11.6793369764688 11.3627573433453 11.3895981193628 11.7123444972639 11.5479926737085 11.3541048508363 11.3309195852564 10.6005688868582 11.0433203680863 11.7660827016750 11.6721692973429 11.5976606128145 11.7602737193162 11.6192078317618 11.3184127616621 11.3061331045114 11.6894638241694 10.3360505161744 0.0698689129049392 0.0661294555255106 0.0712357396466727 0.0689580069491007 0.0681697998210655 0.0693922424280492 0.067719493922279 0.0661294555255106 0.0750357908214387 0.0661294555255106 0.067610416441487 0.0665519102535671 0.0661294555255106 0.0674210301088466 0.0683533208464726 0.0661294555255106 0.0684176512004135 0.0677412684483185 0.068389019705223 3 3|0 -|/ 17312613 17313326 17312966.1 17312379 17317431 - gene protein_coding_gene FALSE TRUE AT3G46970.1 ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/ transferase, transferring glycosyl groups Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. Identical to Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch phosphorylase H) [Arabidopsis Thaliana] (GB:Q9SD76); similar to glucan phosphorylase, putative [Arabidopsis thaliana] (TAIR:AT3G29320.1); similar to Alpha-glucan phosphorylase, H isozyme (Starch phosphorylase H) (GB:P53537); similar to Alpha-glucan phosphorylase, H isozyme (Starch phosphorylase H) (GB:P32811); similar to starch phosphorylase type H [Citrus hybrid cultivar] (GB:AAM29154.1); contains InterPro domain Glycogen/starch/alpha-glucan phosphorylase; (InterPro:IPR011833); contains InterPro domain Glycosyl transferase, family 35; (InterPro:IPR000811) 0.476679479252427 5.68323932854901 0.000147608109849197 1 6.42117026801871 22.6176691608244 0.476679479252427 0.0357129935541583
AT4G37080_at 6.81471800633496 6.91266294133221 5.92908777867097 5.99140053399107 7.12768431353311 6.6715256244919 8.14095736894608 7.89597695582642 8.48989091516487 8.21356836258712 8.89116150457663 8.65576921342015 8.27096137978142 8.50010141403655 8.37823103857177 7.88137057118723 7.05296502872171 8.10555167597706 8.26572440066803 0.169215174863725 0.166583938783081 0.162210928473628 0.174410276383215 0.164895758547021 0.168119016592756 0.157093245000014 0.159008739472009 0.157687722389558 0.165328832605137 0.154686015790366 0.155071131355885 0.160811267839641 0.160574579224464 0.159791341078391 0.169257974452733 0.174510638229512 0.154012136859710 0.162763926473718 4 4|0 +|/ 17475876 17476666 17476253.1 17473266 17476946 + gene protein_coding_gene FALSE TRUE AT4G37080.1|AT4G37080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42690.2); similar to Os03g0859900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051971.1); similar to Os09g0463300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063405.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44737.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42690.2); similar to Os09g0463300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063405.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44737.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.558600751647047 -5.68170986744159 0.000147939958666020 1 6.41934417151458 15.2055392926029 -0.558600751647047 0.0918286558982113
AT1G54360_at 8.29760457531897 8.03949369597538 7.73061021887946 7.51855652115031 7.76298869146418 7.25981370822175 7.53043990379919 7.46218455868105 7.88204230572479 7.77275885692551 7.27936865271783 7.21122679384065 6.72529345310479 6.58068924534543 7.14839028590809 6.72907211014747 6.5054998804631 7.12127415007788 7.80447423460932 0.18197197997941 0.179395928941894 0.179476182782022 0.176453549874341 0.187422182865743 0.178969220526044 0.175067229096291 0.182943099134124 0.185308067348578 0.184500702856128 0.185917749310992 0.180949296935112 0.177493702863343 0.196653606544310 0.176222762364428 0.174916774483451 0.191355550068487 0.179706917328993 0.185861211763912 1 1|0 +|/ 20295830 20296801 20296526.3 20294223 20296991 + gene protein_coding_gene FALSE TRUE AT1G54360.1|AT1G54360.2|AT1G54360.3|AT1G54360.4 RNA polymerase II transcription factor/ binding / transcription initiation factor similar to TAFII59 (TATA box associated factor II 59), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G04950.3); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); similar to hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] (GB:NP_587928.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442)|similar to TAFII59 (TATA box associated factor II 59), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G04950.3); similar to Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) (ISS) [Ostreococcus tauri] (GB:CAL56382.1); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442)|similar to TAFII59 (TATA box associated factor II 59), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G04950.3); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); similar to hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] (GB:NP_587928.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain TATA box binding protein associated factor (TAF); (InterPro:IPR004823); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442) -0.585797521408638 -5.68087478714839 0.000148121482227020 1 6.41834695307904 15.0663916277882 -0.585797521408638 0.105184192430728
AT1G09415_at 7.95613690388867 8.38394423167327 6.8344990555787 7.11357087464775 7.86403521903915 7.35155884943253 5.4230066174978 5.5369591924344 7.67734430705909 6.84463534162862 5.24182090458002 6.40568843647148 5.37307024615933 6.06205304248551 5.83511452267938 6.08426738594629 5.69706689399834 5.16662147310846 7.88054758875788 0.224785211140673 0.228030232745959 0.220872821241768 0.222981779346356 0.225108951788253 0.233561234807303 0.224638851826463 0.225619863366158 0.229553142184243 0.223219790673518 0.230357837929061 0.235060226720191 0.219843371614205 0.234623486698084 0.228521231889969 0.219843371614205 0.227668222457567 0.225864272568301 0.219843371614205 1 1 - 3037933 3038170 3038057.364 3037756 3038410 - gene protein_coding_gene FALSE TRUE AT1G09415.1 NIMIN-3 (NIM1-INTERACTING 3) encodes a kinase that physically interacts with NPR1/NIM1 similar to NIMIN-1/NIMIN1, protein binding [Arabidopsis thaliana] (TAIR:AT1G02450.1) -0.634195976334463 -5.67862999107826 0.000148610616312316 1 6.41566569296688 13.6583248391876 -0.634195976334463 0.126757952982461
AT4G13180_at 7.74033556764346 8.1824395114667 8.80463821308735 9.06823663029431 8.11892732425743 7.6441584288431 6.89032436055972 7.15587819541239 5.15942275803224 5.39043772364232 5.46528361835428 5.55353212814421 6.21265711044064 6.16191140636392 4.95588897306808 6.31551115770134 6.34299982861902 5.62106103027931 5.84167086898158 0.243314204430411 0.247882211663266 0.246115213156831 0.248514849809201 0.245035367581599 0.239833248612275 0.237477262323692 0.239762530211583 0.249194091689472 0.246179941144394 0.238834739439498 0.238306900140181 0.240427861523855 0.240114423886263 0.242920702273199 0.242016147272693 0.250277399228994 0.242310508426870 0.238601287762754 4 4 - 7657422 7657920 7657701.909 7657192 7658193 - gene protein_coding_gene FALSE TRUE AT4G13180.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.64075380670964 5.67667737327266 0.000149037484782831 1 6.41333268863411 13.5968419990323 0.64075380670964 0.129602157748057
AT3G52870_at 5.68740181609188 5.59963965481095 4.41257750488076 4.36419950348928 4.88925172372061 4.69690254689298 5.72445709245873 5.69933688905319 5.58935532819703 5.64227170950945 5.75331401096445 6.84309804685603 5.81231547493228 5.28865503399944 6.61068538491371 5.90142143434721 4.73333561894693 5.5901669676844 5.82479939323403 0.208019293038867 0.20730978482231 0.219675271039776 0.216323052132231 0.20730978482231 0.215183123119811 0.212269123159022 0.213239844545903 0.211765640061225 0.20730978482231 0.212608532579943 0.20730978482231 0.20730978482231 0.211308779231763 0.21473119426158 0.208070863929094 0.213540777014634 0.214411734300429 0.207826750836455 3 0|3 /|- 19604351 19604954 19604608.9 19604151 19606800 - gene protein_coding_gene FALSE TRUE AT3G52870.1 calmodulin-binding family protein similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT3G13600.1); similar to transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:AAX92763.1); similar to transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:AAX94831.1); similar to Os12g0149900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066163.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.477913761878695 -5.67542294400423 0.000149312408692868 1 6.4118335266594 10.8852705782052 -0.477913761878695 0.0377845582640521
AT2G34200_at 3.26923914275049 3.55695661204668 3.61213151704362 3.36318666773194 4.92317900872199 4.16141897382997 3.51866637333552 3.19595533484507 1.95414369545555 2.65763472516488 3.2491260012164 3.40463747114269 3.30846499618824 3.47214912948646 3.09105255971974 2.88599885220128 3.59329893120068 2.73986224292293 2.66712872571848 0.249045159956942 0.246890422843909 0.258889380599514 0.249606491302075 0.248596624312157 0.251875490785981 0.246355574198596 0.251275180596878 0.252486618223357 0.248765868082044 0.252617598831550 0.247141534200676 0.247111543786426 0.245641009245133 0.246803438701177 0.245050133235186 0.254286075574993 0.245050133235186 0.246400683310992 2 2 + 14448222 14448607 14448462.545 14447727 14449084 + gene protein_coding_gene FALSE TRUE AT2G34200.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE83377.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.710773033492137 5.67356365281663 0.00014972088970701 1 6.40961098031494 6.52227978134955 0.710773033492137 0.157581988584530
AT1G58290_at 10.6926049944105 10.6902876005845 10.4576172803176 10.3176867880652 10.1480762661716 9.93016659321584 12.0297636262386 11.7509817583899 11.2988980443775 11.4178291724744 11.6974470854639 11.8053255686022 11.0107365725406 11.2338481411005 11.5128470988344 10.9035275509480 10.8465797407255 11.7211291393934 11.1495244295958 0.081403393340468 0.081403393340468 0.0859533719888691 0.0832464387244852 0.0849465445136897 0.082763067376697 0.0840212835695835 0.0889275435543825 0.0905074335480268 0.0826043455227649 0.0829397189136926 0.0818256349712754 0.0858052786002064 0.0845174454941914 0.0825342275200049 0.081403393340468 0.0828468633351125 0.0851841926478663 0.0815812516505941 1 1 - 21627770 21628252 21628034.273 21627391 21629865 - gene protein_coding_gene FALSE TRUE AT1G58290.1 HEMA1; glutamyl-tRNA reductase Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis. Identical to Glutamyl-tRNA reductase 1, chloroplast precursor (EC 1.2.1.70) (GluTR) (HEMA1) [Arabidopsis Thaliana] (GB:P42804;GB:Q9LQB9); similar to HEMA3, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT2G31250.1); similar to HEMA2, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT1G09940.1); similar to Glutamyl-tRNA reductase 1, chloroplast precursor (GluTR) (GB:P93111); similar to Glutamyl-tRNA reductase 2, chloroplast precursor (GluTR) (GB:P49294); similar to glutamyl-tRNA reductase (GB:AAA19118.1); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Glutamyl-tRNA reductase; (InterPro:IPR000343) -0.512421599789077 -5.67256612958196 0.000149940533149916 1 6.40841831354453 22.0672384439327 -0.512421599789077 0.06584948680569
AT1G27130_at 8.5667580137279 8.74610205632864 9.37023729147581 9.3925276466586 9.79193645943224 9.18559012471331 9.45149183922039 9.38805026578575 9.69189367001612 9.50645563789624 10.5392699874252 10.6454991319906 10.2427405914495 10.5078399948423 10.2170068421211 10.1614095614906 9.70918120556687 10.3148703072619 9.29718800302024 0.161100449070074 0.146034094830086 0.160080750621355 0.149939565215017 0.143639124231856 0.153989033067191 0.142832860235302 0.145851179497756 0.148709224058922 0.149083453505541 0.145535519067668 0.143787003978679 0.143953938174642 0.145995497499617 0.144496047435319 0.146222729293072 0.164970369621746 0.151761495848614 0.151126746672339 1 1|0 +|/ 9425665 9426543 9426205.6 9425447 9426873 + gene protein_coding_gene FALSE TRUE AT1G27130.1 ATGSTU13 (GLUTATHIONE S-TRANSFERASE 12); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU14 (GLUTATHIONE S-TRANSFERASE 13), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G27140.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.59534355129765 5.6718567250246 0.000150096944880557 1 6.40757002140024 19.1319565320409 0.59534355129765 0.110041793064438
AT1G12370_at 3.73621518021674 3.81234144789919 3.26197848007409 3.30203554996211 2.7479806951582 3.43664894325913 4.50572689146121 5.01585294358991 4.15192996493341 4.04461184462052 3.92507662833471 3.89385414510113 3.80798567986667 3.96491486016123 4.07127750693196 3.85474523156707 3.85166446896291 3.64242153541779 4.32196768159303 0.195100238767046 0.197520778231453 0.203029402596209 0.198182423497751 0.200185202089425 0.207509021643575 0.200665224330035 0.206464959602720 0.204449712655369 0.200854759289019 0.200484808888869 0.195167837694607 0.196292902037075 0.202764387362330 0.199989469223342 0.194219587657292 0.195113255613594 0.202281376777208 0.196864058976197 1 0|1 /|- 4206511 4207462 4206995.667 4206372 4208949 - gene protein_coding_gene FALSE TRUE AT1G12370.1|AT1G12370.2 PHR1 (PHOTOLYASE 1) encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele similar to CPD photolyase [Cucumis sativus] (GB:BAB39480.1); similar to CPD photolyase [Spinacia oleracea] (GB:AAP31406.1); similar to type II CPD photolyase [Stellaria lon (GB:AAQ10672.1); contains InterPro domain DNA photolyase,FAD-binding, C-terminal; (InterPro:IPR008149); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, class 2; (InterPro:IPR008148); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050) -0.688358594342215 -5.67099336720450 0.000150287535170957 1 6.40653751366558 7.75201201849853 -0.688358594342215 0.149057470290266
AT2G19830_at 8.69659128119318 8.7427806343531 9.00766166818004 9.14044808502795 9.2483270834602 9.0601570577459 8.79833000133637 8.89284111289312 8.82480177297822 9.11012845940528 9.72771709748013 9.59882611519412 9.66454227266039 9.75215609270827 9.55800417720597 9.58963441746716 9.45471263391822 9.39167834677904 8.93750296198004 0.124963706943057 0.121757605900053 0.122503439855800 0.122859421419532 0.127660979766381 0.120612391712373 0.124290194107176 0.125228117732281 0.149628269104576 0.132378581052896 0.125983634105817 0.120135722975035 0.126591213415760 0.123537852471945 0.127202895808417 0.121107949417722 0.131090988309434 0.123730698920139 0.132462009121576 2 2|0 -|/ 8565195 8566405 8565574.2 8564849 8566823 - gene protein_coding_gene FALSE TRUE AT2G19830.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT4G29160.3); similar to Os09g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062723.1); similar to SNF7 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95683.2); similar to Os06g0608500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058040.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.483096939440865 5.66515705017775 0.000151582708902641 1 6.39955424684367 18.2232104283393 0.483096939440865 0.0438159910859792
AT3G18080_at 12.3382360751016 12.3819009878899 11.4527995794962 11.2677093696707 12.0406142925689 11.8404445586180 11.0675114371761 10.9075876145799 10.9454755515030 11.1247851633358 12.1391368146633 12.3036918372086 11.9673247629441 11.9471313705176 12.0461657337272 11.6969945675173 11.6073569701428 12.1234146279967 10.816533787563 0.0783230705064343 0.075402031118166 0.0775877561004322 0.0779998986323043 0.0764855631002137 0.0829833284867737 0.0778066453714473 0.0785229340240702 0.0873789782875237 0.077654433397277 0.0785215929828823 0.075813019767023 0.075402031118166 0.0819488688086694 0.0768008659278866 0.0762140328057784 0.0788596012641245 0.079649929738461 0.076127174340819 3 3|0 +|/ 6193177 6194077 6193641.286 6191563 6194458 + gene protein_coding_gene FALSE TRUE AT3G18080.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ramsey] (GB:ABC55716.1); similar to beta-mannosidase 2 [Oncidium Gower Ramsey] (GB:ABC55717.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.496610086428657 5.6642108471047 0.000151793804144126 1 6.39842152312813 23.1326839492495 0.496610086428657 0.0552173371769588
AT1G32440_at 6.6566844933698 7.0750576619705 6.97182950382406 6.6672604678321 6.55502200542782 6.98205426991614 8.76904723283342 8.49002198866553 7.25822752048183 7.91213185578486 7.16268351290606 7.53436065425233 7.0023658593422 6.95209726739863 7.24602354386626 7.49899954436095 7.45062375051667 7.10478804731672 7.48105012934991 0.206775961263055 0.197657592272969 0.197414836103253 0.197216135329564 0.193147728938093 0.196494557331175 0.199433244746538 0.201429545002534 0.208656016141058 0.193203729672721 0.195404502804851 0.188500694197404 0.200972906604800 0.198729858507937 0.193406297724966 0.188500694197404 0.204373779931342 0.194126025880026 0.20042675730607 1 1|0 +|/ 11714056 11714854 11714459.333 11712142 11715092 + gene protein_coding_gene FALSE TRUE AT1G32440.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G52920.1); similar to Pyruvate kinase isozyme G, chloroplast (GB:P55964); similar to Pyruvate kinase isozyme G, chloroplast precursor (GB:Q40546); similar to Pyruvate kinase [Medicago truncatula] (GB:ABE87102.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -0.630069172585168 -5.66298033680276 0.000152068795940668 1 6.39694820869419 14.6681035068302 -0.630069172585168 0.125748959865655
AT1G78170_at 4.45534459680369 5.16505174558729 1.12460520398206 1.11547911282019 3.45419002823077 3.02604728748536 3.93232356929419 4.37979306691843 3.65879990266920 4.32364419817843 5.90898524517322 6.57152034060606 5.37509851379544 5.49756769326231 6.44538033503496 4.1507876874519 2.04046319194013 4.79967660605969 4.74435828996251 0.249656013418748 0.251938667457562 0.262649931054885 0.27118948165013 0.260342345347537 0.255082746807274 0.255356704064156 0.249656013418748 0.261667944814030 0.251696999133476 0.253362124342953 0.256302780914965 0.249979086084760 0.261320050292778 0.258589024198186 0.253057661848336 0.266424785459939 0.252974797875884 0.256473057256993 1 1 + 29419063 29419773 29419483.091 29418952 29419987 + gene protein_coding_gene FALSE TRUE AT1G78170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22250.1); similar to WW domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96334.2); similar to Os03g0191200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049232.1) -0.723315174229609 -5.6594521982181 0.000152860202120983 1 6.39272239803711 8.00208053402467 -0.723315174229609 0.163011860699394
AT1G07040_at 9.11638240454871 9.26023495827571 9.31770745907023 9.517964147223 9.9943261087778 9.4629167095174 8.1049785652369 8.04382694826199 7.77185823661793 7.38840060434895 7.21158464906912 7.03539419749831 7.93081408747409 7.92109946328281 6.88423190049779 8.23156213729063 8.53951227284682 8.31384493862526 7.4818896523972 0.230686791178484 0.228432325814641 0.234652015924759 0.233605409957021 0.230044890949460 0.237592913264278 0.233420023353516 0.230964957507172 0.265573803160008 0.231438470337903 0.235178351263348 0.239207745972699 0.236542906822047 0.231722851594352 0.246887520893503 0.234597326769428 0.247633807485341 0.234784940666087 0.236444783702620 1 1|0 -|/ 2161232 2162189 2161773.7 2160937 2163307 - gene protein_coding_gene FALSE TRUE AT1G07040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27030.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05517.1); similar to Os10g0463800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064789.1) 0.576497755884015 5.65696792737528 0.000153420086357796 1 6.38974554001556 16.7552363060862 0.576497755884015 0.101930778886507
AT1G19680_at 7.99226593176657 7.92470886981965 7.06087281992994 7.20889536903128 8.33130559607355 8.15517657696393 7.00750034019453 7.27735887124358 7.81663863606377 7.32350428818479 6.1270568479701 6.44117278776412 6.80892208082575 6.44072210938356 6.29263279400343 6.56810358099531 6.83395175743154 6.36441168757806 7.76491685255971 0.198982849702947 0.197929248761269 0.190460275773039 0.189153622936552 0.196686434220324 0.202984943232247 0.188998156716109 0.193135783783562 0.210913517662091 0.188998156716109 0.199836979403852 0.195649719254002 0.195731998912735 0.199517098947908 0.209037121250351 0.190253905548727 0.194116209777657 0.197643575762026 0.188998156716109 1 1 + 6807020 6807477 6807242.8 6805448 6807851 + gene protein_coding_gene FALSE TRUE AT1G19680.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G75400.1); similar to Os01g0261100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042647.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE79651.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.505897066307588 -5.65581817645018 0.000153679946466196 1 6.38836744028499 14.6795813625512 -0.505897066307588 0.0624724195991343
AT2G40230_at 4.92870832563225 5.57279625490433 4.54551423989859 4.50542954909906 6.3900886072619 6.82021899000528 5.36390549274728 6.02989796772964 5.0989687086629 4.64618546327694 6.85981349543062 6.8543174940996 5.91197724483425 6.79475931266936 6.22597342434684 5.70797898108724 5.13782778148431 5.51079161795688 4.34480802049153 0.242574101041136 0.242574101041136 0.252988205175981 0.252391582508964 0.245505692496172 0.257193711563102 0.256725702432822 0.242574101041136 0.247675039587113 0.243807805979701 0.242574101041136 0.243733676071278 0.248404709391014 0.245839105057131 0.247648486069429 0.242574101041136 0.255570895950366 0.249859417805065 0.243930018651968 2 2 - 16810411 16810861 16810674.636 16810170 16811819 - gene protein_coding_gene FALSE TRUE AT2G40230.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT1G27620.1); similar to Os01g0382200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043090.1); similar to Os01g0104900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041768.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD68809.1); contains InterPro domain Transferase; (InterPro:IPR003480); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964) 0.760130845578839 5.65457348987733 0.000153961791817126 1 6.38687528361258 10.930611919976 0.760130845578839 0.176906747066736
AT4G34090_at 7.53934434349876 7.86861846828227 6.31084194730982 6.9451789700582 7.60093444888815 6.8014797798019 9.04357893198122 8.656641294996 8.58227281968156 8.8257033140154 8.3558769029675 8.91718365563187 7.93719369085128 8.39562453319075 8.49792994620462 8.90418605503212 7.8265996244364 8.20132317552086 8.54491193868153 0.206977055125569 0.196692265084929 0.237842805175904 0.213350325485685 0.202499301702445 0.217026061687369 0.203662553424288 0.202366969180803 0.208920454485162 0.205860932432878 0.211393036745051 0.205032596886031 0.197081932869174 0.210121642458788 0.206368401508488 0.204688776331540 0.213093797660146 0.201507403506231 0.198256787958921 4 4|0 -|/ 16328063 16328995 16328339.8 16326888 16330185 - gene protein_coding_gene FALSE TRUE AT4G34090.1|AT4G34090.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23370.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN61482.1); similar to Os03g0109700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048710.1); contains domain TPR-like (SSF48452) -0.816954982994225 -5.65449517471042 0.000153979543806642 1 6.38678138846741 16.1110534674882 -0.816954982994225 0.197286370623578
AT1G44830_at 0.80930213204871 0.875467242598945 1.05939038900890 1.05891339271403 0.81227825742313 0.843997066954553 0.457466119726505 0.882242036975413 0.784102778809449 0.373061010411926 1.53761091556585 1.80272108210445 1.05063151910924 1.48355900841082 2.75341285930760 1.53153816063337 0.97623296963904 1.71167754959899 1.07535902416044 0.225255462450354 0.225607773593332 0.235387371980754 0.216715323418080 0.216715323418080 0.228164739951128 0.229159107661279 0.224204600819518 0.226589894471097 0.224491794663231 0.219645893563529 0.224392689111622 0.229019522907198 0.216715323418080 0.228636991024378 0.217082113896212 0.220648755535489 0.218016467282913 0.218679613175426 1 1 + 16936356 16936779 16936555.364 16936232 16936951 + gene protein_coding_gene FALSE TRUE AT1G44830.1 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to AP2 domain-containing transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G21910.1); similar to AP2 domain-containing transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16924.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.52463706530333 5.65343106265071 0.000154220966161484 1 6.38550547384325 2.02493071926799 0.52463706530333 0.074598145459833
AT3G07540_at 3.3339698402136 3.69992108431393 2.70236022818862 2.41830911644133 2.11603438165169 2.60842678931259 3.75955892880071 3.82588468465471 3.66318799407221 4.0388629383471 3.91151766894342 4.499404913519 3.72947994444108 3.36202228363169 4.94378923399267 3.66345241050942 3.28982679427840 4.08493852082575 4.18127621737314 0.256532910759654 0.257788050364251 0.265497483254823 0.270334739582962 0.25882769440258 0.265724433575607 0.256661077709911 0.266687224314926 0.272521547025310 0.265313919410871 0.262868277456424 0.258781453296061 0.25439955645763 0.258127123842471 0.256689954934238 0.25439955645763 0.260524259834622 0.255884884386233 0.258385180653758 3 3 - 2404770 2405316 2405068.364 2404515 2407547 - gene protein_coding_gene FALSE TRUE AT3G07540.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to formin homology 2 domain-containing protein / FH2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48360.1); similar to FH protein NFH1 [Nicotiana tabacum] (GB:AAF24496.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.60955304213016 -5.64829519977776 0.000155391855023952 1 6.37934451397229 7.0063896422964 -0.60955304213016 0.117556828741734
AT2G40820_at 4.6221548428832 4.56167101597168 4.54150662560648 4.74479743499786 5.10388509399454 4.87051248224904 3.80933527095802 3.92409850959181 3.37114917356828 4.53243878112047 4.63936122698207 4.22657543598768 4.24273644004271 4.34919876686536 4.19256687014883 4.69974908102569 4.92097675245378 3.89022846421429 4.04541018973851 0.232711137591787 0.225408060546490 0.230213846334377 0.230549270718869 0.229619681441058 0.243726493654017 0.225937916213025 0.220023374258759 0.242715071553037 0.226151835845430 0.221789119617228 0.226952919139613 0.23153701400907 0.220023374258759 0.224817052944114 0.223099513636906 0.220403585270168 0.220023374258759 0.238392302320873 2 2 - 17041862 17042370 17042133.364 17041619 17046552 - gene protein_coding_gene FALSE TRUE AT2G40820.1 proline-rich family protein similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT3G56480.1); similar to plectin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68172.1); similar to Os01g0805700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044563.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Transcription factor AP-2; (InterPro:IPR004979); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.499017623800052 5.64811552444053 0.000155432988912042 1 6.37912889079039 8.71133191512698 0.499017623800052 0.0580749441407266
AT3G23410_at 7.47802997326192 7.77893193617304 7.99655289080684 7.92687480489086 8.05186501178283 8.14379438883735 7.15291559247997 7.2135029760788 6.99768453833465 7.65721300741308 7.95989785105751 7.52631105912167 7.22220907655737 7.5561904513149 7.37974306999261 7.7211544103163 7.00649801486439 7.65348798691841 6.74405857126761 0.173485269785768 0.170882836305437 0.163161865994633 0.170494832322241 0.166233883396513 0.160879815873858 0.169703372663899 0.172406355091451 0.175709603736768 0.161586049934569 0.166694593986322 0.173521324262014 0.163800754378938 0.168635167615449 0.166612555794275 0.16591735623519 0.162742571069356 0.162978213697600 0.160062949287927 3 3 + 8385437 8386004 8385785.182 8382812 8386155 + gene protein_coding_gene FALSE TRUE AT3G23410.1 alcohol oxidase-related similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT1G03990.1); similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT4G28570.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31024.1); similar to Os02g0621800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047464.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31021.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Long-chain fatty alcohol dehydrogenase; (InterPro:IPR012400); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.497063886130243 5.64634520180735 0.000155838897334727 1 6.37700406906056 15.0358943779671 0.497063886130243 0.056744745216359
AT3G24760_at 5.67361722441929 6.81438811529472 6.22339855315977 6.53116460093613 6.83944592542718 6.66412823479384 5.17615596797941 6.09008341341872 3.80376137091387 4.29375770003333 5.16382007386423 4.89162831729288 5.09825637813088 5.36080171651931 4.87978453951608 5.32120814626022 5.30631830218238 5.7158246382968 3.42248533976512 0.280259844953366 0.262309436192811 0.277923934322319 0.279023252182505 0.276158639047927 0.288806062695102 0.275029790424442 0.272022314415934 0.298231332545906 0.276460238810776 0.270180661929642 0.267175134008613 0.266807785027581 0.267806685399356 0.278374752444864 0.262309436192811 0.291805380065213 0.271125579154064 0.264068269249501 3 3 + 9040679 9041233 9040972.909 9040095 9041841 + gene protein_coding_gene FALSE TRUE AT3G24760.1 F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G23390.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 1.00158847103580 5.64603788119218 0.000155909476242706 1 6.37663515178817 10.7801511215513 1.00158847103580 0.260277771737081
AFFX-Athal-GAPDH_M_s_at 11.1868366452109 11.3137390800016 11.6203941232696 11.5375646843809 11.3639636410394 11.0323726482333 11.5285456961103 11.4940273586218 10.2359181170888 10.5925545061171 11.4169055442793 11.5992560922959 11.4218506023241 11.1978672827865 11.5845555298418 11.2460328304920 11.3625027776072 11.0919306248590 10.2528973708697 0.0882863515928526 0.0877467273179353 0.088017814428582 0.0874065428166174 0.0873726843526274 0.0928229580216132 0.0864024018630597 0.085953285185882 0.099490937867141 0.0885717086332449 0.0879026640312355 0.0867090536671713 0.0864605508613274 0.094063720265521 0.0885469162789523 0.085953285185882 0.092162809793934 0.0916860262819142 0.0939049150540156 NA NA NA NA NA FALSE FALSE 0.506221287556761 5.64474571649484 0.000156206605959677 1 6.3750838120746 22.2474651472348 0.506221287556761 0.0633741787711529
AT4G01910_at 2.44007208999261 2.65909294484994 3.01816983402422 3.21765782433154 3.68974227822667 3.27459585408701 1.97719055209672 1.53622169218459 1.13120782769408 1.55719200386875 1.78878936367126 1.52449541054753 2.11849760517072 0.8750587325317 1.68621607372612 1.37849421285683 1.71065045293853 1.57259015501970 1.85629856286341 0.256259112284876 0.250591483502361 0.260849739743999 0.266001889133248 0.25764938081559 0.264518083274848 0.250167250822712 0.256580578893526 0.265769746129433 0.251598197259868 0.251496755146499 0.253668263140728 0.256484317642395 0.258611321869165 0.250167250822712 0.250167250822712 0.257716478284854 0.254958295825197 0.250167250822712 4 4 - 824737 825283 825071.818 824568 826685 - gene protein_coding_gene FALSE TRUE AT4G01910.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02180.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01930.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01920.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.606923331942724 5.64232938520728 0.000156763853839070 1 6.37218202548242 4.27496711653243 0.606923331942724 0.116676026521665
AT2G29470_at 1.17372890757792 0.753764012248762 2.86191996831789 3.16870238256379 1.03354990994753 1.56289123166154 1.41132775170988 1.39832306543296 1.03196882087336 0.897886458379876 1.46184948780895 1.24468635299823 1.31094408140496 1.09137618271934 1.11981601828088 1.40565493616229 1.48990796091649 1.54324740109844 1.18524476706846 0.223384240515899 0.223168128676640 0.246244917005286 0.252220210387123 0.222222540172245 0.219934035396662 0.224163132436178 0.227281467206761 0.234185245210508 0.219934035396662 0.219934035396662 0.219934035396662 0.226613499006825 0.223241262735359 0.221183734840286 0.219934035396662 0.223583558536365 0.237305803882809 0.223395291544234 2 2 - 12635900 12636456 12636271.364 12635618 12636620 - gene protein_coding_gene FALSE TRUE AT2G29470.1 ATGSTU3 (GLUTATHIONE S-TRANSFERASE 21); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU4 (GLUTATHIONE S-TRANSFERASE 22), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29460.1); similar to glutathione S-transferase [Euphorbia esula] (GB:AAF64450.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.633774279723387 5.63927744279211 0.000157470711436687 1 6.36851543708847 2.85642689607299 0.633774279723387 0.128440761079771
AT1G07520_at 3.22504109732653 2.87130221773315 3.81308115272846 3.55177879881027 3.23032566477448 3.67828821972852 2.30496393732166 2.25363107900884 2.54762823542340 2.47728499242039 2.59211454870152 2.36436510664388 2.64986036482039 2.44208380050346 2.61852719575414 2.63373909992254 3.38529419589545 2.97073198067885 2.27405539057914 0.205245285434240 0.205229408059605 0.209517640635568 0.201184020271113 0.201624882623558 0.207811590753233 0.198952754700124 0.198911858252171 0.211309127808909 0.202109705608672 0.204583350997076 0.199132071833903 0.201473708832082 0.205202419304264 0.199027787064502 0.198911858252171 0.212770957899294 0.204275355363940 0.201654826905147 1 1 - 2309742 2310255 2310094 2309561 2311802 - gene protein_coding_gene FALSE TRUE AT1G07520.1 scarecrow transcription factor family protein similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.589366936651805 5.6364343397749 0.000158132253632423 1 6.36509824811554 5.68609105897366 0.589366936651805 0.108999112703657
AT1G47250_at 7.36263707691577 7.6484306977038 7.99646757283458 7.76597480476957 7.8184898378352 7.74012594732881 7.9510004784231 7.72719658769259 6.50095815163165 6.81372267074865 7.54224520805104 7.74149264285344 7.52288042855521 7.35167117194926 7.4937620064932 6.88500145095798 7.42154601487714 7.10819662496656 6.16051407296784 0.178387791136180 0.183967764994104 0.182041036047839 0.180398900312990 0.177625923077395 0.184812601248293 0.185381170040658 0.180146073164369 0.203941625490761 0.182456685917948 0.184899443114106 0.182109282118619 0.188333888273256 0.193171707805425 0.183636554970210 0.182346428260507 0.185819798551622 0.189768776816204 0.195896051490461 1 1 + 17321900 17323270 17322934.818 17321617 17323514 + gene protein_coding_gene FALSE TRUE AT1G47250.1 PAF2 (20S proteasome alpha subunit F2); peptidase Encodes 20S proteasome subunit PAF2 (PAF2). Identical to Proteasome subunit alpha type 1-B (EC 3.4.25.1) (Proteasome subunit alpha type 6) (20S proteasome alpha subunit F-2) (Proteasome component 2B) (PAF2) [Arabidopsis Thaliana] (GB:O23712); similar to PAF1 (proteasome alpha subunit F1), peptidase [Arabidopsis thaliana] (TAIR:AT5G42790.1); similar to 20S proteasome alpha 6 subunit [Nicotiana benthamiana] (GB:AAN07899.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.524783071156745 5.63624692784384 0.000158175965061844 1 6.364872942725 14.6888309131233 0.524783071156745 0.0756377553383969
AT2G04410_at 9.80401205483508 9.88279962860222 10.2145111994363 10.1644088186055 10.4353959826736 10.0797206088283 9.7140098682069 9.67404312099704 9.13430509726964 9.4947856037098 10.0346365066997 9.72457470254969 9.79501923338425 9.9108731993957 9.79309530013296 9.90690919984285 10.0273340149636 9.75635645386449 9.30487169116364 0.125039790618192 0.122957096792222 0.123916878509223 0.127351205821925 0.128295277736991 0.129576279987023 0.123355822993185 0.125086291656932 0.137166331582040 0.129248725011122 0.131598706598335 0.124995678000541 0.126206130665258 0.134678525660259 0.124325983143512 0.124977624782847 0.122285472151486 0.124331864078129 0.133126884026065 2 2|0 -|/ 1533967 1535067 1534244.667 1533694 1535115 - gene protein_coding_gene FALSE TRUE AT2G04410.1 similar to NOI [Arabidopsis thaliana] (TAIR:AT5G55850.1); similar to nitrate-induced NOI protein [Zea mays] (GB:AAB86937.1); contains InterPro domain Nitrate-induced NOI; (InterPro:IPR008700) 0.506036006599365 5.63223878455882 0.000159113899296150 1 6.36005287473617 19.5860729721407 0.506036006599365 0.064011524272833
AT3G16080_at 9.92322000451836 10.0377406789117 9.6296254526846 9.56356742859655 9.59789404176454 9.3171112729679 10.1222328177430 10.3696943456534 9.70857256575545 9.87004691227995 9.42918852494422 9.89605126223734 9.31426932588293 9.22710757105218 9.84002250192678 9.18999054707096 9.02151140690978 9.27846065649 9.93995157326952 0.103322159347555 0.101671761910194 0.108618580980878 0.107309954310816 0.104239512903439 0.110610308773471 0.105199838643210 0.102727089664402 0.10743255539115 0.103214064570506 0.103604296283499 0.102953488084694 0.102458423792880 0.105271498428881 0.107067208413330 0.103874017746061 0.110857489359760 0.109048642500873 0.103482560272584 3 3 + 5455039 5455650 5455427.909 5454824 5455933 + gene protein_coding_gene FALSE TRUE AT3G16080.1 60S ribosomal protein L37 (RPL37C) Identical to 60S ribosomal protein L37-3 (RPL37C) [Arabidopsis Thaliana] (GB:Q8LEM8); similar to 60S ribosomal protein L37 (RPL37B) [Arabidopsis thaliana] (TAIR:AT1G52300.1); similar to ribosomal protein L37 [Glycine max] (GB:AAS47512.1); contains InterPro domain Ribosomal protein L37e; (InterPro:IPR001569) -0.513060435953621 -5.63135435515401 0.000159321658477646 1 6.35898890038244 19.4396852095213 -0.513060435953621 0.0686908914896005
AT1G25320_at 6.14885418475325 6.41165787153814 4.5179482217124 4.82539611257104 5.7373701088186 5.75630221222878 3.99055687805674 3.93438562842504 4.12189271166309 3.97249722757976 5.25447640442341 5.45543225720835 3.98223864833016 4.87700559661702 5.52789525746265 4.53858760882433 4.73580433120318 4.91529730109367 3.80430786395232 0.238355372859714 0.244754792257985 0.242349381411588 0.243236269007709 0.252131745911435 0.242328613439332 0.23975566385851 0.246206099595577 0.248590488961293 0.2495803682227 0.242348287656999 0.240080772146627 0.243711972011194 0.239943640909207 0.242511727444987 0.237452674365694 0.239962515339115 0.237452674365694 0.249100119561953 1 1 + 8879613 8880130 8879851.909 8877844 8880297 + gene protein_coding_gene FALSE TRUE AT1G25320.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01210.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os01g0514700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043190.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.516250048859851 5.63081981833016 0.000159447365247163 1 6.35834578122053 9.6038462906182 0.516250048859851 0.0707418207482687
AT2G03550_at 8.83796053816521 8.9502932113499 8.47466828590824 8.4090310045214 8.7554661289756 8.50937205874698 9.62480781375995 9.78496007622954 9.11040388854138 9.65849788402886 8.81776520113527 8.82578747861821 9.21464885755024 9.32574975056074 8.65195948723119 9.5408535843192 9.29893228421262 9.11425042567554 9.2031438456565 0.105144590734113 0.112286515772059 0.108517700307832 0.110053116589167 0.108177930666421 0.10966359436396 0.113329446136223 0.113750229012754 0.113708805299797 0.105262112916137 0.107706089184830 0.105147001685114 0.107035006090736 0.105144590734113 0.109020546926853 0.105144590734113 0.116756450005215 0.110464830582084 0.113305360221289 2 2 + 1077421 1077855 1077644.727 1077033 1078080 + gene protein_coding_gene FALSE TRUE AT2G03550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48690.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48700.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83378.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.493821431375394 -5.62705003691723 0.000160336906806852 1 6.35380877886047 18.1296991845763 -0.493821431375394 0.0555766664684817
AT2G39670_at 8.35140276706648 8.40632801280847 7.47798629839863 7.54603752170993 8.4955346589868 7.86343433120242 8.71925089542625 8.23566979361741 7.66123563354567 8.13339387763456 6.34766381100874 7.35946532273851 7.53894406022673 6.79767326623064 7.79236559572204 7.79119673167999 7.33074156868579 7.24677126219519 8.22483772374757 0.176298101745478 0.181057921381483 0.181316751478279 0.177216322191944 0.183965508385824 0.178414691345919 0.179821291931968 0.185845621273666 0.184024123562703 0.178861654584683 0.187502452203858 0.175901754871774 0.182939691898514 0.192787626352194 0.176177109837476 0.186699673294320 0.183595696405023 0.180678870705458 0.175901754871774 2 2|0 +|/ 16543173 16543999 16543618.25 16541308 16544396 + gene protein_coding_gene FALSE TRUE AT2G39670.1|AT2G39670.2 radical SAM domain-containing protein similar to radical SAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19630.1); similar to radical SAM domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87375.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Conserved hypothetical protein 48; (InterPro:IPR004383); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.656650520326756 -5.62587633189072 0.000160614939073577 1 6.3523956836741 15.7780014252122 -0.656650520326756 0.138557171444077
AT3G48850_at 2.69843138441567 3.20232386356453 4.81147886667939 5.39013715710560 2.50274818664624 2.58031402095741 2.35209910219785 2.09390862645165 2.57542560614436 2.29474285330277 2.52981408799928 2.23399530717163 2.2093836475958 2.23365307463194 2.44554026504529 2.25587416855312 2.35402060660484 2.67278892523675 1.96254048143229 0.22653476381529 0.223384833244906 0.244345927065596 0.247682026389573 0.221976043464233 0.232679166505239 0.228840231917606 0.237681868395319 0.229523875097827 0.217944664098816 0.222846478219646 0.222039332200291 0.232562383464333 0.220957140039954 0.240537901195981 0.221282402181254 0.236312384692801 0.227412610152851 0.217944664098816 3 3|0 -|/ 18126146 18126585 18126383.571 18125511 18127484 - gene protein_coding_gene FALSE TRUE AT3G48850.1 mitochondrial phosphate transporter, putative similar to mitochondrial phosphate transporter [Arabidopsis thaliana] (TAIR:AT5G14040.1); similar to mitochondrial phosphate transporter [Zea mays] (GB:BAA31583.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.661896463542378 5.62468783776759 0.000160896997714912 1 6.35096453171944 5.52615685465961 0.661896463542378 0.140742691699531
AT4G14930_at 9.13332343396616 9.09181783596116 9.43094467525256 9.41080497518954 9.79703405313555 9.69573748170555 9.21792911727022 9.1482503666201 9.3137674527505 9.45983825779946 9.9800424158776 9.5757091491373 9.85025448971917 9.76940632584137 9.6098819145459 10.0842199727040 10.2130412829742 10.0521859451967 9.43658742064028 0.101289653207275 0.096479515676949 0.102899714209516 0.0963915837952377 0.094467104706142 0.099007513102463 0.0981703631699393 0.0978831181210053 0.102798089956532 0.0986326875272641 0.0988985294324789 0.0951797102046444 0.0967342718955434 0.0995957333138899 0.094848635849087 0.093973022489322 0.097707327096646 0.0971903892198113 0.0978072902671182 4 0|4 /|+ 8540172 8541164 8540627.667 8538582 8541895 + gene protein_coding_gene FALSE TRUE AT4G14930.1 acid phosphatase survival protein SurE, putative similar to acid phosphatase survival protein SurE, putative [Arabidopsis thaliana] (TAIR:AT1G72880.1); similar to Survival protein SurE [Medicago truncatula] (GB:ABE91728.1); contains InterPro domain Survival protein SurE; (InterPro:IPR002828) 0.462122542234583 5.62230266283701 0.000161464650182973 1 6.34809160668514 19.0133504410857 0.462122542234583 0.0227252112768740
AT3G16010_at 6.14702728441127 6.73277610782121 5.81815527440656 6.19232029459299 5.70490070336514 6.28208451281706 6.95019215426199 7.34680131955822 7.41952089014669 7.3779936349979 6.70753637645679 7.20128530676825 6.69127330656567 6.57261204077342 6.78181973183309 7.17185813047722 6.38995691925116 6.33146981271351 7.44566417925298 0.193800707705869 0.183408859346622 0.190004376874464 0.185010790165927 0.190462071688976 0.204173596547809 0.182745646395091 0.184978157170343 0.212746460715741 0.18124510252574 0.185404471874334 0.185509464037541 0.190481942381391 0.193916237867898 0.184229207153302 0.181409204623247 0.199374725981388 0.201114613530842 0.180847359151370 3 3 + 5435661 5436200 5435937.273 5434020 5436270 + gene protein_coding_gene FALSE TRUE AT3G16010.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to putative membrane-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58263.1); similar to Os07g0249100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059290.1); similar to Os02g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046504.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.739125234289352 -5.62207704075702 0.000161518456694037 1 6.3478197938811 13.4694668836897 -0.739125234289352 0.170749900507825
AT3G05180_at 5.69473382621972 5.68497079631008 5.01115752347441 4.7363632213241 4.83225024902195 5.07873487531993 6.35786462170825 6.38962350988251 3.21666465047229 4.92564843529458 4.15808826342158 5.14691623724179 4.68702849406973 4.17782996865698 5.24580252531871 4.27406084699722 4.31804947837314 4.05012582399576 5.05912176111675 0.238217063771596 0.233918588493559 0.230091756954730 0.234911216160670 0.234789771136949 0.234650985554602 0.239081027686073 0.236787337528403 0.236943555420361 0.238360071660250 0.233497353015722 0.235779975502145 0.230091756954730 0.242065217395699 0.236286761906885 0.240149619515803 0.252365388319378 0.230593184021927 0.233454885518154 3 3 - 1468631 1469504 1469018 1468404 1470557 - gene protein_coding_gene FALSE TRUE AT3G05180.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G54790.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABD32376.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.505206149390113 -5.62089283890079 0.000161801179163517 1 6.34639300557088 9.92707032143457 -0.505206149390113 0.0641401666824079
AT3G18210_at 5.97389087545359 6.03908478614483 6.16638291951489 6.4849799369495 7.18104763977334 6.95585911155991 6.44006303296486 6.60910458412148 5.53329239711951 5.41200185244545 5.63091730523013 5.64113971475502 5.94305205487021 5.9241972829389 6.44237201748168 6.04106404840492 6.45786594394122 5.91105915884117 5.21913952042383 0.192633725077999 0.189121738774562 0.197494815280406 0.193353356116326 0.196167880425104 0.199557122764031 0.196768648851118 0.191294051015373 0.215414433932279 0.188010781727703 0.188112034030828 0.197014490602146 0.192239651645270 0.197979865723948 0.200179418556426 0.192019948576623 0.21019459306848 0.194426074531548 0.189336771828795 3 3|0 -|/ 6238271 6239326 6238812.5 6237936 6240611 - gene protein_coding_gene FALSE TRUE AT3G18210.1|AT3G18210.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein|oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G22950.1); similar to hypothetical protein DDBDRAFT_0190977 [Dictyostelium discoideum AX4] (GB:XP_646715.1); similar to Os01g0502400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043135.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.521172716544933 5.61889987820078 0.000162278178948144 1 6.34399121547724 12.1748531262124 0.521172716544933 0.0744415158587672
AT4G31850_at 8.33781330100657 8.61731952246436 7.23001477161645 7.60796782631792 8.48647193914778 7.76772186833576 8.81408584948297 8.78552721369916 8.7518564717212 8.63422028452814 7.82014035763307 8.34944152607564 8.12148487168573 8.31789801603344 8.38954551052374 8.68545565395155 7.73133427760503 8.13135277675765 8.68281586214866 0.149423955917717 0.147665019697825 0.154999895674774 0.153901802658658 0.143801778982234 0.152516016012474 0.145574610212241 0.146085267382045 0.142024339179549 0.148896273413344 0.149470736105653 0.145674205591872 0.149103251168197 0.145559702891682 0.149891801983035 0.145621826848752 0.150594462137331 0.151609520707623 0.142035374194865 4 4 + 15405771 15406330 15406100.818 15403026 15406499 + gene protein_coding_gene FALSE TRUE AT4G31850.1 PGR3 (PROTON GRADIENT REGULATION 3); binding encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to Os10g0421800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064626.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47632.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.680970809662448 -5.61748587294069 0.000162617517923331 1 6.34228671454302 16.6473465348001 -0.680970809662448 0.148705168687682
AT1G01520_at 0.878817980165881 1.00527998750877 2.00718548672637 1.66554937496944 0.913218718532115 1.36970154106744 3.40002933056669 3.00487779036475 1.8973347713118 2.60956604827468 1.67700904179973 1.34502639886061 2.15697772566920 1.72364119291819 1.53182979855542 2.59133817924030 2.50153089015083 1.63007854159625 3.12514674870099 0.207647060936503 0.205688431499982 0.200241374207245 0.211997336269477 0.200241374207245 0.209135782091376 0.219518452935366 0.218520523839446 0.20815294121063 0.203451926196321 0.204977601963314 0.210931742997867 0.200241374207245 0.204336833056728 0.213053749346572 0.204774333826303 0.205100440852561 0.216956714525253 0.220243356663396 1 1|0 +|/ 191142 192115 191485.875 190596 192139 + gene protein_coding_gene FALSE TRUE AT1G01520.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT4G01280.1); similar to MYB transcription factor MYB133 [Glycine max] (GB:ABH02857.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.616337188412344 -5.61697361729551 0.000162740637529921 1 6.34166913187221 3.999929939835 -0.616337188412344 0.122028595097461
AT2G46250_at 4.39188233090494 4.58036180064692 4.16847394265228 4.01789350030843 5.62941379212731 5.02998896731832 5.34762934901402 5.02757679218357 6.20683940228052 6.64521924180214 6.50540995299602 5.77157817364246 5.47821398746637 5.45942148056450 4.9933930145085 6.77368853300087 5.80209980907659 4.97855857115886 7.66799384347733 0.242834918990634 0.243375077503881 0.247380664427385 0.245936934039391 0.242166660181166 0.242169236285933 0.249414841662257 0.245638481907659 0.255285909843913 0.243694839353639 0.245389221886487 0.242166660181166 0.245286692129509 0.249192640392532 0.243844676505137 0.242166660181166 0.261652339644792 0.242166660181166 0.244265347874698 2 2 + 18999696 19000224 18999963.455 18998244 19000400 + gene protein_coding_gene FALSE TRUE AT2G46250.1 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41620.1); similar to unnamed protein product; gb|AAF24581.1 gene_id:MBK23.17 strong similarity to unknown protein [Medicago truncatula] (GB:ABE79740.1) -0.622571036568669 -5.61576964781752 0.000163030400007393 1 6.34021742418877 11.0543090274720 -0.622571036568669 0.124784621828236
AT1G60140_at 8.69539414459346 8.99554887932758 8.77365994453532 9.18063597470813 9.40946114799947 9.01727282188978 7.42836273315185 7.54060936989528 6.90701954477056 7.43834442394947 7.65349892020438 6.73454510134454 7.57562677151178 7.75918904518554 6.27754898994869 7.13061058115395 7.3030264256672 7.91722961694035 6.75957193975854 0.214702308958149 0.215927314635793 0.218473886294240 0.217575277023976 0.219098997882646 0.227703488098149 0.216534397165864 0.210518260028104 0.22319664498019 0.214637573252674 0.214183405276897 0.215411669541451 0.213350797182674 0.221001445329062 0.214595180876339 0.213220935309983 0.233420441524054 0.227268814450125 0.216402163929421 1 1 - 22180965 22181487 22181211.364 22180599 22184495 - gene protein_coding_gene FALSE TRUE AT1G60140.1 ATTPS10 (Arabidopsis thaliana trehalose phosphatase/synthase 10); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65494.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.594604742938082 5.61512542064644 0.000163185673358582 1 6.33944052917101 15.7945621608396 0.594604742938082 0.112436712081822
AT2G31870_at 4.9886276602916 4.91881609621937 5.52888041133476 4.96297011415308 5.21884001923542 4.3837471480515 3.05386464509251 2.90758612115455 3.65799658754005 3.42371638122571 3.85520994772597 4.14758521677691 3.63675782751658 3.76656502665703 3.98815982621807 3.57965870090229 3.51100666624513 3.98317129314662 2.98988443774538 0.205239514196331 0.201451630685403 0.209352462316113 0.208635944006414 0.2120879180248 0.202550002310603 0.202077304415520 0.200040654206224 0.206363931909616 0.209057872586392 0.201345222161136 0.202947169263368 0.209927464166884 0.20810450943769 0.206079502333485 0.199011872771518 0.208618162473526 0.210285422291281 0.209193174058125 2 2|0 -|/ 13557082 13558105 13557542 13556938 13560921 - gene protein_coding_gene FALSE TRUE AT2G31870.1|AT2G31870.2 TEJ (SANSKRIT FOR 'BRIGHT'); poly(ADP-ribose) glycohydrolase|TEJ (SANSKRIT FOR 'BRIGHT') mutant has Long free-running circadian period; Poly (ADP-ribose) Glycohydrolase similar to poly (ADP-ribose) glycohydrolase (PARG) family protein [Arabidopsis thaliana] (TAIR:AT2G31865.2); similar to Poly glycohydrolase [Medicago truncatula] (GB:ABE84358.1); contains InterPro domain Poly glycohydrolase; (InterPro:IPR007724)|similar to poly (ADP-ribose) glycohydrolase (PARG) family protein [Arabidopsis thaliana] (TAIR:AT2G31865.2); similar to Poly glycohydrolase [Medicago truncatula] (GB:ABE84358.1) 0.75385048507452 5.60974879622478 0.000164487717665318 1 6.33295377976572 8.07827325126774 0.75385048507452 0.176812892022103
AT2G32500_at 6.71744159406857 6.9701263405494 6.69698923824708 6.3052232401425 7.03484901578881 6.37739701217212 9.00992576844016 8.78634537925471 8.3247275064003 8.5339198368079 8.57083728875348 8.76103103517555 7.83687660908617 8.38078448670564 8.47307888799321 8.71860356081241 7.42244860236522 8.43995702340316 8.3336046302145 0.232643905466323 0.215288175876814 0.222761819662790 0.216667143658124 0.216209039448151 0.218526243318023 0.224487063999694 0.219650380092568 0.22042971980504 0.233620410027825 0.215478198228431 0.210904643893879 0.221452851411052 0.22354911833075 0.219185763119939 0.212307897734018 0.238490128147291 0.225747338785877 0.226232802696328 2 2|0 -|/ 13802448 13803413 13802892.444 13801501 13804304 - gene protein_coding_gene FALSE TRUE AT2G32500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31670.1); similar to Os03g0110900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048719.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097) -0.669655140838977 -5.60628184752013 0.000165333161520624 1 6.3287682556679 15.5987219542135 -0.669655140838977 0.144742563473186
AT3G23150_at 2.38668260468667 1.81392887038810 2.31889102001119 2.60630273117541 3.05347618158896 2.30539332901475 2.33685736306894 2.25297406991969 2.18246703507229 1.94687164492805 3.17422430341755 2.88720508098209 3.55938518371193 3.43288567477582 2.8580994700276 3.48602061404378 3.88205940404993 3.05473733661152 2.44050405463271 0.254110613096869 0.248515421916063 0.260450367494353 0.249484038893791 0.245510212392125 0.255127683741579 0.24625464604535 0.254011276067517 0.256026896954369 0.250825000765449 0.245281230659358 0.251514972293493 0.251495316836445 0.257807842560633 0.245281230659358 0.260039523391041 0.26087238487809 0.254068349201803 0.254228853456276 3 3 + 8257041 8257543 8257249.364 8254670 8257742 + gene protein_coding_gene FALSE TRUE AT3G23150.1 ETR2 (ETHYLENE RESPONSE 2); receptor Involved in ethylene perception in Arabidopsis similar to EIN4 (ETHYLENE INSENSITIVE 4) [Arabidopsis thaliana] (TAIR:AT3G04580.2); similar to ethylene receptor [Fragaria x ananassa] (GB:CAC48386.1); similar to ethylene receptor [Pyrus pyrifolia] (GB:BAD61003.1); similar to ethylene receptor [Brassica oleracea] (GB:BAB84007.2); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.737642321836619 5.60406293855824 0.000165876687277647 1 6.32608831556903 5.12520062706349 0.737642321836619 0.171080679448255
AT3G18000_at 4.96465404290055 4.45814532298446 4.30174888841537 3.95297352288213 5.54141557995045 4.59760265076378 4.8699038361721 4.63031891165327 3.78303943283337 4.26867761594618 6.06068259660427 6.71786297597252 5.54873375137211 5.6216677366204 6.49620018433397 5.57271460026726 4.88358228485782 5.71083806703642 4.14243271751833 0.195180156964814 0.189865543568696 0.193362121138947 0.189630909852705 0.190588137712882 0.194685187796444 0.188892761197952 0.195308293103951 0.194271401001165 0.203373390925906 0.192428594386930 0.192486513204128 0.188280249936234 0.193291843533098 0.189452616648817 0.187835009557567 0.196077029294337 0.192162171020539 0.194398775029917 3 3 + 6155032 6157306 6156126.762 6154369 6157558 + gene protein_coding_gene FALSE TRUE AT3G18000.1 NMT1 (N-METHYLTRANSFERASE 1); phosphoethanolamine N-methyltransferase Arabidopsis thaliana N-methyltransferase-like protein mRNA. Identical to Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) (NMT1) [Arabidopsis Thaliana] (GB:Q9FR44;GB:Q9LVH3); similar to phosphoethanolamine N-methyltransferase 3, putative (NMT3) [Arabidopsis thaliana] (TAIR:AT1G73600.1); similar to phosphoethanolamine N-methyltransferase 2, putative (NMT2) [Arabidopsis thaliana] (TAIR:AT1G48600.2); similar to phosphoethanolamine N-methyltransferase [Oryza sativa] (GB:AAS57723.1); similar to Putative phosphoethanolamine N-methyltransferase 3 (GB:Q9C6B9); similar to phosphoethanolamine N-methyltransferase [Brassica napus] (GB:AAP83582.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.814749158971236 5.59989977272575 0.000166901600580537 1 6.32105777275813 9.6102212761648 0.814749158971236 0.199304519174719
AT2G01990_at 5.03532671260059 5.1973597699244 4.53640637206748 4.76952265799544 4.59514768008198 5.02212733397765 4.54479774723133 4.71179499708152 3.35819811866017 3.7483656716425 5.05147416470172 5.00863929596123 4.67727025899194 4.25221190175429 5.59749375829292 4.3915637677553 5.210870711919 5.49657204350381 4.03069415088368 0.230273453378191 0.225058013280604 0.231272681528732 0.228271607394042 0.229592960917244 0.237249732506964 0.234190628608797 0.224278167987681 0.239463731763763 0.224076493899051 0.222022986467030 0.222022986467030 0.237923581149292 0.224615107839639 0.228565142322873 0.222672359504715 0.222780034501119 0.232354530815382 0.229332394254364 2 2 - 465262 466419 465813.455 465000 466723 - gene protein_coding_gene FALSE TRUE AT2G01990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14630.1); similar to hypothetical protein MtrDRAFT_AC147472g17v1 [Medicago truncatula] (GB:ABE90158.1) 0.553411939226212 5.59959129175004 0.000166977812046106 1 6.32068489756646 9.13815105966445 0.553411939226212 0.0933208600070492
AT1G05340_at 5.28682590545869 5.12215990001427 5.49076061567759 5.84825672665902 5.00673216996856 5.1456019147587 2.84323757266672 3.06707801808563 2.85672407256155 2.13912379902352 2.46695636717203 2.15903750932814 1.97987199471362 2.03351598164222 2.10360174912962 2.03346124804399 2.72162269423614 2.16496288492772 2.31470585731987 0.253259896294935 0.271736346073737 0.256241978333996 0.252679838025856 0.255987006868316 0.268647205135651 0.251567317423190 0.250582419827138 0.249181910621149 0.247464782616917 0.250403802738299 0.246777009257600 0.250407527551665 0.247363681301204 0.247671430244225 0.247219003071959 0.251390194204073 0.247668781612206 0.246777009257600 1 1|0 -|/ 1559391 1559620 1559457.625 1558843 1559902 - gene protein_coding_gene FALSE TRUE AT1G05340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32210.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32591.1) 0.532020034195256 5.59694785606498 0.000167632404107263 1 6.31748895569141 7.04869662621989 0.532020034195256 0.0819606534793038
AT4G39180_at 4.66931732073683 4.25071192029956 5.50750218382529 4.74268207428436 6.1535651184416 5.79904860667038 4.29996032360842 4.2221527121358 4.09197650168101 4.30176550900179 4.35588987620046 4.31451077552424 4.27990026601702 4.37241484134017 4.04393937179599 4.18095687846707 4.90043357798619 4.4653634014477 3.97149072747415 0.223169446384168 0.222975598079442 0.219502054536371 0.221596164265945 0.226190165417327 0.232686376131943 0.220979182451536 0.223488863599150 0.245676953078617 0.224296061997245 0.226549250336065 0.224371809041184 0.220353621751168 0.227382684197296 0.240223024899523 0.233483215883747 0.224281201155019 0.231326671131744 0.228411909022900 4 4 - 18244290 18244799 18244490.455 18243768 18248799 - gene protein_coding_gene FALSE TRUE AT4G39180.1 SEC14 (secretion 14) encodes a protein that complements the function of a sec14(ts) mutant of S. cerevisiae similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.716297902077647 5.59585350592124 0.000167904196152125 1 6.31616550819722 9.19857771732512 0.716297902077647 0.163435106114415
AT4G32950_at 3.69775235613135 3.94814846439489 2.63138544930251 2.69653861546245 2.66982726460527 2.51569460403352 2.85933120975796 3.27915960937648 3.21299708785668 2.52445686245986 2.72443655798465 2.93074857152939 2.78876568697629 2.33550032851164 2.89957908410001 2.29401979148327 2.55742014430931 2.52751104345836 2.97908417348477 0.244132466293044 0.236796764217362 0.238905744433136 0.236337975791694 0.235550260727789 0.260013436759706 0.241697898230410 0.239151567635415 0.249060822970199 0.240678555472296 0.240346423538920 0.241810962164302 0.234872986205627 0.237568455008445 0.249728409107506 0.236967194928854 0.258129340265035 0.236575858205672 0.237050687191390 4 4|0 -|/ 15904470 15905512 15904977.5 15904447 15906013 - gene protein_coding_gene FALSE TRUE AT4G32950.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT5G26010.1); similar to protein phosphatase-2C; PP2C [Mesembryanthemum crystallinum] (GB:AAC36699.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.545500741726946 -5.59523389852146 0.000168058289336026 1 6.31541609357143 5.806109876122 -0.545500741726946 0.0894134961552496
AT1G19310_at 8.27350189591532 8.49720077338335 8.38594921144593 8.46222162151005 8.92087744878981 8.77085474027374 7.54047950992833 7.56620321299493 8.47888287212078 7.4746775894672 8.33642810574626 8.27647659205431 8.3063703057168 8.48342504278221 7.98721578725142 8.1091532082526 7.66624395389105 8.02659754664106 7.59556782295983 0.149985077212072 0.140417690748686 0.143253041513716 0.150073717295998 0.142833719582100 0.152848429131508 0.151262984526606 0.143987827785759 0.160367921922558 0.150176063210365 0.144830389562043 0.147646472971330 0.145995620833846 0.145519270163240 0.148396210156937 0.144595102454270 0.162766543105575 0.143543351137545 0.145142588952095 1 1 - 6676439 6676930 6676687.182 6676225 6677664 - gene protein_coding_gene FALSE TRUE AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G23780.1); similar to Os12g0636000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067361.1); similar to Os01g0766200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044354.1); similar to putative RING finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53343.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.48245439852938 5.5947826383834 0.000168170610143053 1 6.3148702515119 16.3015101747675 0.48245439852938 0.0486487380013908
AT1G59870_at 11.6624664372078 12.326617011409 11.8970748615375 12.0921354438468 12.3360807747413 11.8779529149848 10.0557025288171 10.1566641235612 11.7765885435184 11.0418111215225 11.8034549149091 11.8851364472630 11.4320561757590 11.7656164492323 11.1234167307194 11.4564882963476 10.9118749192446 11.8878486407271 10.7737455713956 0.134846810820893 0.116350066497237 0.120000327415727 0.118210202920405 0.116971088064471 0.121966249123218 0.122707216141958 0.116334014194843 0.119305285888860 0.112864858278010 0.116841559227128 0.116683653228541 0.115312730714442 0.117419193175665 0.121799746032904 0.115228745673956 0.132690385059418 0.114804611805467 0.118774383793857 1 1 + 22042945 22043478 22043160.545 22038171 22043703 + gene protein_coding_gene FALSE TRUE AT1G59870.1 PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8); ATPase, coupled to transmembrane movement of substances ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid?dependent manner. Required for mlo resistance. Identical to Pleiotropic drug resistance protein 8 (PDR8) [Arabidopsis Thaliana] (GB:Q9XIE2;GB:Q8VXW5); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G16340.1); similar to ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15210.1); similar to Pleiotropic drug resistance protein 12 (GB:Q5Z9S8); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59565.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84767.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.668151649912632 5.59443409459526 0.000168257419045723 1 6.31444862966624 22.9158959206402 0.668151649912632 0.144707125631103
AT1G27340_at 6.5112400432182 6.3144248009708 5.40652907234003 5.17947330760776 5.35152121066145 5.15762553326977 6.19563999088659 6.26628971828468 6.18205263584731 6.05170307541282 5.97575666314236 6.01776837847721 5.72840468994132 6.10143085894234 6.54342663830941 6.029679197943 6.02059316756304 6.0033793635982 5.78292864219722 0.186649029175721 0.187673397475998 0.183316927971476 0.179065270150554 0.181739794274338 0.185345857491272 0.181128288897434 0.192403839709386 0.191450598206114 0.182386021792811 0.181572212907535 0.189432731228379 0.187406393813336 0.188859032771729 0.184116150050424 0.180794068640059 0.184536356868266 0.187445706968339 0.181014732502391 1 1 + 9497306 9497744 9497476.818 9495507 9498072 + gene protein_coding_gene FALSE TRUE AT1G27340.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G15710.1); similar to putative fimbriata [Oryza sativa (japonica cultivar-group)] (GB:BAD88307.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.500558969391577 -5.5863174731099 0.000170292504060056 1 6.30462406423865 11.8269011201009 -0.500558969391577 0.0630825144171745
AT4G38550_at 10.7653355870003 10.6725678822415 10.7273869371449 10.610014624435 10.7021413205442 10.6433838996888 8.8446691134613 8.92770264540087 10.7654349691892 9.76285702424969 10.3939048140382 10.2358323042473 9.75968461621143 10.5304430743695 9.6802072144923 10.0451770614556 9.74690074864135 10.5123626785303 9.62630888220283 0.0776924692689976 0.0755851573978571 0.0770348259374217 0.07699995154972 0.076416989938007 0.0813361810466205 0.0750018631387032 0.081123460352645 0.0812059619595419 0.0781143003536268 0.0744669084222094 0.0758186019298941 0.0787057889097977 0.0773590861532948 0.0784340334559565 0.0765240242037241 0.0803210371572666 0.0744669084222094 0.078940753004342 4 4 + 18027971 18028488 18028178.364 18025629 18028794 + gene protein_coding_gene FALSE TRUE AT4G38550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20950.3); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.464846663605798 5.58541568747631 0.000170520220941915 1 6.3035317909608 20.3189490958457 0.464846663605798 0.0313076447850845
AT1G18690_at 2.58452436660117 2.25047448025381 2.80438603606824 2.87743186029025 3.29620630956448 2.97133075834673 2.39114158261341 1.90499138705509 1.90195657797685 1.95168342751269 2.62800961059868 2.56302779205449 2.81539894046248 2.50314972007298 2.26716028811739 2.45369307293614 2.60815345708662 2.88955707280799 2.42115403387683 0.196469761361934 0.197879987069607 0.201948085320299 0.199695611555409 0.197774167184185 0.208355943909461 0.196469761361934 0.202926697891025 0.201187186455216 0.207408216814389 0.196469761361934 0.199978779854945 0.199600746849161 0.200914261871679 0.198203724409182 0.199593449913810 0.205185396959649 0.204180730161528 0.200531736641181 1 1 + 6436122 6436618 6436342.455 6433988 6436912 + gene protein_coding_gene FALSE TRUE AT1G18690.1 galactosyl transferase GMA12/MNN10 family protein Identical to Putative glycosyltransferase 4 (EC 2.4.-.-) (AtGT4) (GT4) [Arabidopsis Thaliana] (GB:Q9M9U0); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT1G74380.1); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT5G07720.1); similar to putative glycosyltransferase [Lotus japonicus] (GB:CAI11456.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) 0.601988259040764 5.58518062735512 0.000170579631024590 1 6.30324705423133 4.97636922629376 0.601988259040764 0.117219615459260
AT3G15590_at 7.95269946746611 7.9040836920344 7.84972006525603 8.11051419816571 7.76543091037131 7.96207870094126 8.2843001409222 8.24305143513911 6.74500648285963 7.21013210185483 5.76322545214133 6.23529986119632 6.53268993728948 6.23304089152518 5.90934530376889 7.13392476639859 7.2264813965717 6.31619179261681 7.73501040626618 0.201717068385832 0.200943261946205 0.201389463548934 0.197965227407025 0.201631141943511 0.200452603698490 0.199671875189106 0.200914161723948 0.209478398541370 0.206542098654298 0.204620459495384 0.199337322756932 0.20712587924889 0.2064974986672 0.197965227407025 0.198641294012845 0.210974410892849 0.209204109094976 0.19846124117269 3 3 - 5275581 5276040 5275769.545 5275408 5277998 - gene protein_coding_gene FALSE TRUE AT3G15590.1 DNA-binding protein, putative similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.3); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93021.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.492686226839278 -5.58382171043076 0.000170923521458044 1 6.30160075538636 14.8333971207114 -0.492686226839278 0.0575907831896898
AT1G48460_at 4.45762590837558 5.22503881491472 4.66828634204195 4.74347031161297 4.1910986143336 3.69760219175059 5.06165653070281 5.88483216579875 3.64211878427713 4.43526685170334 2.95300581782189 2.92027054974153 4.01764210769314 3.23505744934254 3.44818365774576 4.07406801047848 3.16931558130692 3.67759017300885 4.84517213549137 0.220383122449081 0.217836126228009 0.219902774346202 0.221775012777657 0.217836126228009 0.231328476265321 0.223229497733154 0.224972813253121 0.239350090445341 0.219104405901395 0.222861552240747 0.221632078269909 0.229788654045097 0.224096689447125 0.217896329403654 0.222091213281595 0.25245287848916 0.227478140805409 0.227367862190138 1 1 + 17916187 17916781 17916426.727 17915014 17916968 + gene protein_coding_gene FALSE TRUE AT1G48460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63040.2); similar to Os01g0704200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044004.1); similar to hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula] (GB:ABE93586.1); contains domain Multidrug resistance ABC transporter MsbA, N-terminal domain (SSF90123) -0.85140078938904 -5.58334907899349 0.000171043299449353 1 6.3010280948835 8.6134068227162 -0.85140078938904 0.213056370320996
AT4G28140_at 2.44896439521835 2.42552985412376 2.41435574897102 2.80997987062423 2.59529257874437 2.62790870765059 1.65377895411854 1.73116369270409 1.66182264546607 1.48345077690618 1.81914734568582 1.89909041227720 1.65992904132764 2.08020149238591 2.00608482509216 1.92672649423937 2.37332572090506 2.12044644292747 1.38855218871208 0.190968891157691 0.189446144047305 0.199023817069235 0.191120333517601 0.194805495728596 0.198412209475125 0.199140943695321 0.199092667157968 0.208184054771357 0.189387138739764 0.189387138739764 0.190681290828484 0.200116481604925 0.193297236769242 0.199777880499893 0.192081601511477 0.203612557398547 0.198728359346705 0.198618605566014 4 4 - 13974911 13975483 13975225.909 13974697 13975914 - gene protein_coding_gene FALSE TRUE AT4G28140.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G20880.1); similar to AP2 domain-containing transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25342.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.510684385308334 5.58102997964498 0.000171632319785962 1 6.29821759427779 4.08681881304429 0.510684385308334 0.070107396767112
AT1G65870_at 1.43686540539462 1.64246048434567 0.778788787592078 1.17929549288243 0.65764893172904 0.591358798488754 2.77553076164964 3.96472800985987 2.07844733734069 2.1753645108622 2.15127412363124 2.50525782764427 2.14823996590290 2.20326698877382 2.02744321200428 2.50279708824254 1.56559770460536 1.62803106870532 2.29294282665266 0.243898802688471 0.244565751396662 0.249348074304233 0.248210480682351 0.252833526958643 0.25389612497748 0.257086845016589 0.255914615144312 0.243898802688471 0.247486865270966 0.243898802688471 0.243898802688471 0.243898802688471 0.243898802688471 0.244340880211233 0.243898802688471 0.243898802688471 0.248076616857988 0.254839434078212 1 1 + 24507289 24507743 24507521.545 24507287 24507856 + gene protein_coding_gene FALSE TRUE AT1G65870.1 disease resistance-responsive family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22900.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) -0.871943111742919 -5.58035854088611 0.000171803258962088 1 6.29740370221548 3.76520461185471 -0.871943111742919 0.220348229936333
AT3G02210_at 4.80782181359366 4.96171929982469 4.34620560500063 4.67483167160231 3.91854906350022 4.1569137202313 4.78911628751674 5.11214178786312 5.04898693344781 5.23036005225396 4.82446879159878 4.7833965636836 4.54336926312531 4.65329513953548 4.79314211727032 5.09538677347126 4.60133785829187 5.11372277873151 5.50423502634858 0.179817813672544 0.186701061130244 0.181694071529151 0.179817813672544 0.181156739549354 0.19096621330727 0.191432453758072 0.190894889990223 0.190100175521000 0.184361400333430 0.190614147395746 0.188078430618898 0.191385912452331 0.18576753932397 0.182180167509673 0.184444889766902 0.183822852989201 0.182282541431770 0.187040005802963 3 3 - 409373 410101 409702.091 409208 411659 - gene protein_coding_gene FALSE TRUE AT3G02210.1 phytochelatin synthetase family protein / COBRA cell expansion protein COBL3 Identical to COBRA-like protein 1 precursor (COBL1) [Arabidopsis Thaliana] (GB:Q9SRT7); similar to COB (COBRA) [Arabidopsis thaliana] (TAIR:AT5G60920.1); similar to phytochelatin synthetase family protein / COBRA cell expansion protein COBL2 [Arabidopsis thaliana] (TAIR:AT3G29810.1); similar to COBRA-like 1 protein precursor (BRITTLE CULM1-like 6 protein) (GB:Q6Z4G8); similar to hypothetical protein [Cleome spinosa] (GB:ABD96927.1); similar to phytochelatin synthetase-like protein [Phaseolus vulgaris] (GB:AAR13304.1); contains InterPro domain Carbohydrate-binding; (InterPro:IPR008965); contains InterPro domain Phytochelatin synthetase-like conserved region; (InterPro:IPR006918); contains InterPro domain Cellulose-binding family II/chitobiase, carbohydrate-binding; (InterPro:IPR012291) -0.551876937709604 -5.57763500517222 0.000172498494261232 1 6.2941015086134 9.62701686350673 -0.551876937709604 0.0936484336044965
AT2G41190_at 4.96363741440551 5.20372391975264 8.17271108550292 7.89177888593552 7.13890571802522 6.77608491696452 8.24866693514679 8.27607880716337 2.84090478361346 5.46503402607751 3.56530217509765 3.04037191579133 5.89328348104485 4.39204677727134 3.14602214212761 4.40307426454732 7.1242098432334 5.04458940423703 4.6214849517064 0.213087490441933 0.213016571932556 0.214683131226667 0.211768279394383 0.211055712695383 0.212378267263116 0.213702592309349 0.224438638554102 0.222472198766892 0.213925864826999 0.215992662798339 0.238729071790962 0.214447189325730 0.222048977158152 0.221810727414364 0.211055712695383 0.215142125460316 0.215933965621144 0.225907135944024 2 2 - 17174670 17175716 17175232 17174357 17177485 - gene protein_coding_gene FALSE TRUE AT2G41190.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.544407314554831 5.577565783548 0.000172516203389136 1 6.29401756243438 11.5265753374710 0.544407314554831 0.089747619440249
AT1G68300_at 9.44561363637102 9.58510691385251 9.92440567137528 10.1007636650963 9.91659581766963 9.39342109606095 9.19498770757489 9.1950932962873 8.47543007895774 8.89689800692904 9.49766987669933 9.37826700597238 9.46049869590846 9.4093289387045 8.94904324114119 9.58516896478277 9.14217847610733 9.13958131840078 8.65492340659643 0.146190286956709 0.148543151011015 0.149244297102016 0.150629363648778 0.146728747126757 0.157227144853205 0.149159431216132 0.153997084614179 0.167539239611827 0.154041614052447 0.146530348849256 0.144251066715267 0.149462870927112 0.152171073746286 0.153807483535271 0.148302508203181 0.153695334504872 0.158343074335498 0.15411139530175 1 1|0 -|/ 25602193 25602845 25602542.333 25601994 25603020 - gene protein_coding_gene FALSE TRUE AT1G68300.1 universal stress protein (USP) family protein similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to Os01g0511100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043170.1); similar to Universal stress protein (Usp) [Medicago truncatula] (GB:ABE84254.1); similar to Os01g0303800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042835.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.561531370624654 5.57750124667773 0.000172532715748351 1 6.29393929675788 18.5924822566405 0.561531370624654 0.098545828544708
AT2G34410_at 4.34576144485733 3.78096742375007 4.01920798464865 4.19780921154219 4.59651586778412 4.59838207152591 4.50667415509933 4.56472394542221 2.57296284949429 2.57110974018782 3.52273111299166 2.93221257074941 4.23624696479032 3.24817071070343 3.81725434488695 3.56049651282805 4.26705155097849 3.45243375275644 2.48151426668134 0.247951726449526 0.247951726449526 0.247951726449526 0.256039686365282 0.256568030832513 0.247951726449526 0.247951726449526 0.247951726449526 0.258126510587534 0.253263163203799 0.259348733290707 0.261963363097882 0.247951726449526 0.258558284637520 0.262309264458357 0.255106290180429 0.269810769540575 0.262637496185448 0.249926291143663 2 2|0 +|/ 14527294 14527611 14527470.333 14525485 14529701 + gene protein_coding_gene FALSE TRUE AT2G34410.1|AT2G34410.2 O-acetyltransferase family protein|O-acetyltransferase similar to acetyltransferase-related [Arabidopsis thaliana] (TAIR:AT1G29890.2); similar to O-acetyltransferase-related [Arabidopsis thaliana] (TAIR:AT5G46340.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06550.2); similar to Os05g0582100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056436.1); similar to Os01g0631100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043644.1); similar to O-acetyltransferase (ISS) [Ostreococcus tauri] (GB:CAL56376.1); contains InterPro domain Cas1p-like; (InterPro:IPR012419) 0.570579723112048 5.57726382626608 0.000172593476447661 1 6.29365136392282 7.41197375084876 0.570579723112048 0.103002267522728
AT3G49530_at 7.46554151539209 7.52955686537872 7.96589387880293 7.82524544666945 7.65851843532821 7.49154201057924 6.59366362427922 6.17794976446974 6.13630428910077 5.9570556629285 6.50993121450777 6.48991828556595 6.2597107169419 6.3512085436183 6.48848604303606 6.09317454198057 6.3004619223612 5.8315960801973 5.97919205496728 0.196418526110323 0.195995785814840 0.194439210600800 0.197333028693896 0.197248508352778 0.201433197994874 0.193631865195968 0.197229032940413 0.211355027440597 0.201028325013646 0.197897238269335 0.195333215556136 0.203517268213133 0.198066946770922 0.194001880758997 0.193631865195968 0.196712382124952 0.196679501117186 0.199138667699666 3 3|0 -|/ 18373633 18374313 18373948.444 18373428 18375898 - gene protein_coding_gene FALSE TRUE AT3G49530.1 ANAC062 (Arabidopsis NAC domain containing protein 62); transcription factor similar to TIP (TCV-INTERACTING PROTEIN), transcription factor [Arabidopsis thaliana] (TAIR:AT5G24590.2); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.529999458329482 5.57476946414655 0.000173233212376459 1 6.29062570227422 13.4958614030416 0.529999458329482 0.0820102173954617
AT2G19730_at 10.5581725147061 10.6035196224494 10.1135824568097 10.0865658120160 10.0501550881561 10.0126780636664 10.6892209415506 10.7187581765177 10.1033942565293 10.2936563577455 9.81134908734755 10.2090761104482 9.70847316228481 9.63799098274906 10.4806434879972 9.48603914491277 9.5764464773263 9.70459144443522 10.0751743785219 0.083844584941251 0.0838466115881531 0.089108589568058 0.0861547497183323 0.0853006477761894 0.0862459116869813 0.0845277965153299 0.0822950124598898 0.0900889630478492 0.0858441472218834 0.0829706535445973 0.0826473703775276 0.086935292050841 0.0935580644908866 0.092842955033489 0.0820195581771398 0.087112370537584 0.08425981987828 0.0851277108520797 2 2|0 +|/ 8518936 8520038 8519649.9 8518589 8520303 + gene protein_coding_gene FALSE TRUE AT2G19730.1|AT2G19730.2|AT2G19730.3 60S ribosomal protein L28 (RPL28A)|structural constituent of ribosome Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to unknown [Solanum tuberosum] (GB:ABA46763.1); contains InterPro domain Ribosomal L28e protein; (InterPro:IPR002672) -0.453627276194243 -5.57455138747079 0.000173289262926766 1 6.29036112218478 20.3461988685439 -0.453627276194243 0.0123139488617724
AT4G24960_at 5.63121909665976 6.24523213564457 6.17250736378743 6.03982265925242 6.40949797668963 5.73412491695846 7.09082662940336 7.0432068310175 4.65809103804527 5.06060807098976 6.71009043761628 7.0881859126059 6.52322969844926 6.49618095442487 6.72696176306892 8.28715375752649 6.05168853503328 5.92475656689828 4.99366070138616 0.26872646811898 0.263995995163795 0.269280425553667 0.267598307707951 0.266009338039114 0.275045786317829 0.268714936071678 0.262441950302189 0.283782237273133 0.272834752809019 0.260875191102538 0.261852213843571 0.27657451717717 0.269374820241425 0.267018557046339 0.270472936081182 0.285440760169476 0.266603175576954 0.28278063206726 4 4|0 +|/ 12828075 12828614 12828441.444 12827947 12829253 + gene protein_coding_gene FALSE TRUE AT4G24960.1 ATHVA22D (Arabidopsis thaliana HVA22 homologue D) Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Identical to HVA22-like protein d (AtHVA22d) (HVA22D) [Arabidopsis Thaliana] (GB:Q9S760;GB:Q9SW30); similar to ATHVA22E (Arabidopsis thaliana HVA22 homologue E) [Arabidopsis thaliana] (TAIR:AT5G50720.1); similar to Protein HVA22 (GB:Q07764); similar to Os11g0498600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067939.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) 0.704139036193268 5.57419846585948 0.000173380012512033 1 6.28993292429347 12.1108801461816 0.704139036193268 0.159831104424060
AT1G17650_at 5.22169999717701 5.2758727033397 4.11778352297998 3.79345848223317 4.1837921624551 4.63778022815687 6.28830902927484 6.21086309642372 6.14788498122444 6.34916302249978 6.59231379538895 7.44703997252365 6.10401129000755 6.74215754613124 7.46324066463455 6.95408204356706 5.83205270249287 6.43860125593944 6.25236935652573 0.196811394942235 0.202267163676384 0.214068649438557 0.20195372772724 0.203880708721958 0.204784341723780 0.193476216908816 0.188696902194773 0.199710620409631 0.207554157236942 0.199008990687013 0.197670690359871 0.190679699274068 0.195893524051398 0.196842483330745 0.189084724281351 0.206083046792786 0.195188801791430 0.196352464469232 1 1|0 -|/ 6069683 6070741 6069996.143 6069470 6072005 - gene protein_coding_gene FALSE TRUE AT1G17650.1 phosphogluconate dehydrogenase (decarboxylating) similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G25530.1); similar to Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like [Medicago truncatula] (GB:ABD28508.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) -0.559550492755927 -5.57008386950749 0.000174441771619017 1 6.28493905804747 11.4394415005479 -0.559550492755927 0.0979288269974775
AT2G30140_at 8.8722133729216 9.38771090905228 10.0915537388634 10.3024423768341 9.08776100233297 8.45016968172525 5.95075058956407 6.4449730824623 7.47887643425698 7.19892581185253 6.63240510651392 7.23236312514402 7.01820108490729 7.031067305957 5.92391469945679 6.805202814831 7.16933579086864 7.4684295932801 7.13836346136602 0.227778364165077 0.2269583512517 0.226605736836282 0.227734174216659 0.227739023324029 0.226246023658805 0.226246023658805 0.228214962763533 0.226767709851963 0.226691252050003 0.232792515642611 0.236765350483805 0.230300672861786 0.230567091921869 0.238211326088239 0.226409631714804 0.232972814185931 0.228285899881161 0.226431334652633 2 2 + 12880192 12880736 12880472.455 12879211 12880897 + gene protein_coding_gene FALSE TRUE AT2G30140.1|AT2G30140.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30150.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); similar to Os05g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055920.1); similar to Os01g0805500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044561.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.728564707866778 5.56403455785224 0.000176015360089608 1 6.27759152183235 15.664531932192 0.728564707866778 0.169645681294206
AT4G14130_at 2.70782266152784 2.28532798339092 1.59473478794909 1.09602405877244 1.71377900924757 1.64332237539378 1.06259318982293 1.25309065151135 2.60411889249024 1.06705575686633 6.77783535944661 2.94313884842902 2.13852109068326 2.20307727838744 6.3696230505988 1.42443749799929 1.16002053640646 2.24895548340144 1.24376707157619 0.243660774047482 0.252661966678486 0.246788978100381 0.253814418276582 0.245701602520694 0.245921533285863 0.247993774428496 0.243660774047482 0.259044139870346 0.246779353520513 0.255195664641495 0.246460681966617 0.248188663748239 0.245874962417631 0.265094860291435 0.246830599862849 0.250999726377135 0.244082279255296 0.243660774047482 4 4|0 -|/ 8137172 8137729 8137410.5 8137047 8138276 - gene protein_coding_gene FALSE TRUE AT4G14130.1 XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR7) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 15 precursor (EC 2.4.1.207) (At-XTH15) (XTH-15) (XTH15) [Arabidopsis Thaliana] (GB:Q38911;GB:O23272); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT3G23730.1); similar to xyloglucan endotransglycosylase 3 [Litchi chinensis] (GB:ABK30789.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.602321836234454 5.56288062766734 0.00017631723998749 1 6.27618920448477 4.0678443647753 0.602321836234454 0.118446728895678
AT3G44350_at 2.03794549484174 2.11485366317701 4.31614024721453 4.11654109591639 1.81017504427127 2.07929999528746 1.4495234174672 1.64633227963203 2.14695414159963 1.94049096465508 1.67289784399524 1.70493085056639 2.02536537367705 1.43210797714887 1.76181814551638 1.56206418729125 1.9990154053279 1.69007061863001 1.87414500290625 0.237665877631709 0.239130155397762 0.279783070314098 0.280888943310379 0.232125783763973 0.233181334801724 0.233986491474596 0.236607897810749 0.235295177230649 0.236611529477628 0.232125783763973 0.232125783763973 0.234386723159605 0.235921515325565 0.239704183140774 0.232125783763973 0.236316011429540 0.247658345260951 0.24273176918841 3 3|0 -|/ 16033850 16035352 16034474.7 16033823 16035474 - gene protein_coding_gene FALSE TRUE AT3G44350.1 ANAC061 (Arabidopsis NAC domain containing protein 61); transcription factor Identical to Putative NAC domain-containing protein 61 (ANAC061) [Arabidopsis Thaliana] (GB:Q9M290); similar to ANAC090 (Arabidopsis NAC domain containing protein 90), transcription factor [Arabidopsis thaliana] (TAIR:AT5G22380.1); similar to NAC-domain protein [Nicotiana tabacum] (GB:BAA78417.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.506106239554202 5.55737742184786 0.000177764532338559 1 6.26949812891519 4.30546665638735 0.506106239554202 0.0685516368061411
AT4G16770_at 8.09012337969394 8.14059437742972 7.56397325294011 7.64637490635037 7.84720234398215 7.84548504134074 8.66503092303616 8.38896234555091 8.71827744899654 8.5724164943795 8.349719957524 8.12944837343366 7.88857379719828 8.75180025765395 8.38481340017066 8.34671306972515 7.71867808188575 8.33417612131663 8.52184490637547 0.149746281279702 0.154977794399229 0.163104788960622 0.166096610636380 0.147956746204544 0.162687506677507 0.151122752921836 0.152210262547583 0.168951154662770 0.148934077317233 0.146015839307069 0.152556633856195 0.146015839307069 0.148870273895323 0.147787320408872 0.150036521493794 0.180428548444025 0.150515004380250 0.155101227244687 4 4|0 -|/ 9434615 9435661 9435104.1 9434376 9437187 - gene protein_coding_gene FALSE TRUE AT4G16770.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G16765.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96197.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.480804052247336 -5.54889895152731 0.000180019083550693 1 6.25917893846701 16.4445533207642 -0.480804052247336 0.050617871696017
AT1G69410_at 10.5945252364734 10.6847859424785 11.3599325585593 11.4480742222498 11.4194085172234 11.0399115417861 11.1520814023540 11.2589130304992 10.7856047229805 11.1033826419057 11.7221242752114 11.1823485323927 11.4257107960707 11.2698010080617 11.4066469640149 11.4064047103304 11.5687128825618 11.3654117523168 10.4881883011603 0.0682100591446814 0.0685330680109893 0.0699806989075788 0.068378781485682 0.069320189530404 0.0746772542014946 0.0686315023686398 0.068434556069713 0.07415670831924 0.0710555901858694 0.0690877479127531 0.067552152738212 0.0698262243788801 0.0694639454348902 0.0682422846008596 0.0683170891606267 0.076964953578297 0.069704065926449 0.0708063387452244 1 1|0 +|/ 26092970 26093785 26093322.556 26092865 26094049 + gene protein_coding_gene FALSE TRUE AT1G69410.1 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative Identical to Eukaryotic translation initiation factor 5A-3 (eIF-5A-3) [Arabidopsis Thaliana] (GB:Q9C505;GB:Q94JU4); similar to EIF-5A (eukaryotic translation initiation factor 5A-1), translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G13950.1); similar to eukaryotic translation initiation factor-5A [Brassica napus] (GB:AAR91929.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Eukaryotic initiation factor 5A hypusine (eIF-5A); (InterPro:IPR001884); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) 0.510129266720612 5.54866257348716 0.000180082374220327 1 6.25889105662809 22.2250975583540 0.510129266720612 0.0716343678291904
AT3G51160_at 6.224332373874 6.38160166875431 6.19690682755586 6.27464031147352 5.98051497651794 6.00764295455197 6.00435392483604 6.09057653012767 5.42575243667897 4.75612684320437 6.44144691389263 6.81158524646515 6.05844540804804 6.3641566836718 6.23983897002653 5.73943992136658 5.57695039684074 5.63907405508 5.18010695340003 0.203145447731983 0.204929727142832 0.204210604951462 0.200510155478266 0.211073585114069 0.219535993291713 0.200390038081619 0.208212049978421 0.22903178338955 0.220607345231685 0.207048660822483 0.201969031739293 0.199752415565187 0.211990220150619 0.200605431610249 0.204776913791566 0.206047104181952 0.205939444473860 0.211770436204422 3 3 - 19018211 19018757 19018532.818 19017989 19019406 - gene protein_coding_gene FALSE TRUE AT3G51160.1 MUR1 (MURUS 1) Catalyzes the first step in the de novo synthesis of GDP-L-fucose. Identical to GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose dehydratase 2) (GMD 2) (MUR1) [Arabidopsis Thaliana] (GB:P93031;GB:Q8LFY4;GB:Q9SD30); similar to GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1), GDP-mannose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT5G66280.1); similar to hypothetical protein [Thellun (GB:ABB45857.1); similar to Chain A, Crystal Structure Of The Gdp-Mannose 4,6-Dehydratase Ternary Complex With Nadph And Gdp-Rhamnose. (GB:1N7G); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain GDP-mannose 4,6-dehydratase; (InterPro:IPR006368) 0.463957632394814 5.54739116045843 0.000180423203822597 1 6.25734244662842 11.7598358345539 0.463957632394814 0.0341520607994674
AT3G26520_at 12.3520218053647 12.4698309706228 12.5363451239267 12.7094392012782 13.0983451340679 12.9787044129781 12.6618767459379 12.7998210150430 12.8520720800267 12.6812936111516 13.6601801779474 13.4868410359579 13.6054242914591 13.3957256797177 13.6069055626829 13.5134988713298 13.1781439074021 13.5467511141595 12.8792917257838 0.0716345973585421 0.0703895270350683 0.0778890263377224 0.0717891932575307 0.0719357805389663 0.0784266551372994 0.0703895270350683 0.0720153315474742 0.0768135566184388 0.0736073435738722 0.0725222370229269 0.0703895270350683 0.0727448065962154 0.07237870851296 0.0713355630035531 0.0703895270350683 0.0775263749898717 0.0718150879959881 0.0762541197838102 3 3|0 -|/ 9724020 9724689 9724255.9 9723680 9725052 - gene protein_coding_gene FALSE TRUE AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein. Identical to Aquaporin TIP1.2 (Tonoplast intrinsic protein 1.2) (Gamma-tonoplast intrinsic protein 2) (Gamma-TIP2) (Salt stress-induced tonoplast intrinsic protein) (TIP1.2) [Arabidopsis Thaliana] (GB:Q41963;GB:O23117;GB:O82446;GB:Q9LRV6); similar to GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma), water channel [Arabidopsis thaliana] (TAIR:AT2G36830.1); similar to tonoplast intrinsic protein [Brassica napus] (GB:AAD39372.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.47739276245765 5.54365816652803 0.000181427884533029 1 6.25279389806043 25.8524995356871 0.47739276245765 0.0480777757849494
AT1G09980_at 3.31021747584568 3.42802624581887 3.70209989282232 4.11679991110571 4.13545760512102 4.48358231592072 3.66247453117531 3.16487214993547 2.48383357549654 2.77118783002648 3.15103750353702 3.19829568825268 3.75318693150542 3.23915751597843 2.91806534315628 3.31159132296099 3.60107978963617 3.1289043933568 3.01894082940403 0.238657487094676 0.242215965510294 0.256385157194950 0.242254214549243 0.238657487094676 0.248553822524359 0.242675789671813 0.247787000055911 0.244265578896881 0.240021898814404 0.241836423764865 0.244484087621715 0.249644407174337 0.238657487094676 0.245239487192445 0.254953459157155 0.24429822067964 0.246857339037723 0.250104695195170 1 1 - 3260721 3260844 3260775.222 3256280 3261616 - gene protein_coding_gene FALSE TRUE AT1G09980.1|AT1G09980.2 similar to ZW18 [Arabidopsis thaliana] (TAIR:AT1G58350.1); similar to ZW18 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95883.1); similar to Protein of unknown function DUF676, hydrolase-like [Medicago truncatula] (GB:ABE93141.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Protein of unknown function DUF676, hydrolase-like; (InterPro:IPR007751) 0.623882364977118 5.54209739050525 0.000181849707465524 1 6.25089139442176 6.7732673773133 0.623882364977118 0.128882622719677
AT1G80480_at 9.6823887997789 9.48117721580874 9.69151381867562 9.55575683766053 9.94283978344464 9.67760851011609 9.37275108283192 9.17272334546632 8.64222490528287 8.89337503977757 9.44410846054805 9.30981276917702 9.4177848370612 9.48361844897129 9.43743886105055 9.37394109171712 9.67767077129319 9.62411732841889 8.6943548714569 0.12205426725105 0.120204320805660 0.121607814754743 0.122369337918157 0.120159579834394 0.118064630740762 0.120819159959598 0.115308054580119 0.131374428079683 0.123866978766541 0.119036620196017 0.116772851565262 0.116536658908863 0.120410404062409 0.118178149143297 0.11480886603088 0.129774134339125 0.124166112730573 0.12766015287518 1 1|0 -|/ 30263293 30264124 30263605.6 30262968 30265571 - gene protein_coding_gene FALSE TRUE AT1G80480.1 PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) similar to PRLI-interacting factor L, putative [Arabidopsis thaliana] (TAIR:AT1G15730.1); similar to Cobalamin synthesis protein (ISS) [Ostreococcus tauri] (GB:CAL54572.1); similar to Os02g0800000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048412.1); similar to Os04g0599700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053753.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW, C-terminal; (InterPro:IPR011629); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) 0.508706462679983 5.54066861037831 0.000182236771324736 1 6.24914940331963 18.6792848458239 0.508706462679983 0.0711999094773495
AT4G23270_at 8.78853588618001 9.2302290021315 9.31332528720732 9.28216443496515 9.77477359904938 9.02285647355688 8.3448338924883 8.20822877098832 7.52179181153303 7.68347161842177 8.91326275544678 8.62166499664901 8.28864252111852 8.35103632228213 7.55794328460253 8.60080656107886 8.41200247463426 8.10786286360644 7.88962258602256 0.221215185209184 0.221215185209184 0.234495453370218 0.221215185209184 0.228462114471926 0.231790147824061 0.226690910626574 0.228726965835279 0.232113121771988 0.246236463243631 0.223832054568278 0.221215185209184 0.239857920213835 0.237973702790425 0.227472533385206 0.222519264198184 0.234401986853453 0.23306595881372 0.238683971853718 4 0|4 /|+ 12173033 12173756 12173475.778 12171113 12173935 + gene protein_coding_gene FALSE TRUE AT4G23270.1 protein kinase family protein similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23310.1); similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23280.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.681840222257921 5.53877668057971 0.000182750653954228 1 6.24684216879493 17.0230924488641 0.681840222257921 0.152847942358283
AT3G21350_at 3.83132760132226 4.47094157728816 4.33140878082057 4.17317088800023 4.75801609650772 4.82013769700807 3.54612246841081 3.48502560264410 4.13609858657688 3.67056729024133 4.6677263116269 4.44735268908798 4.39765133849527 4.5538933174647 4.18145393713561 4.69037487584954 4.61941879418764 3.91059603253435 4.0032052909277 0.246352057709849 0.250371202061469 0.252874311103609 0.254286040800273 0.24956055931265 0.252509846466469 0.253632975564443 0.256739455497264 0.264882581403447 0.251520323628903 0.252220632624324 0.246352057709849 0.256980894996723 0.252434697447498 0.266595529841056 0.247832902119501 0.256669868217261 0.250408679218662 0.246352057709849 3 3|0 +|/ 7517215 7517851 7517469.1 7517076 7518750 + gene protein_coding_gene FALSE TRUE AT3G21350.1 RNA polymerase transcriptional regulation mediator-related similar to Os06g0217500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057150.1); similar to PREDICTED: similar to Mediator of RNA polymerase II transcription, subunit 6 homolog (S. cerevisiae) [Strongylocentrotus purpuratus] (GB:XP_787850.1); contains InterPro domain MED6 mediator; (InterPro:IPR007018) 0.592131871316797 5.5387259042189 0.000182764466962690 1 6.24678023746428 8.3621099063151 0.592131871316797 0.115017861793892
AT3G54840_at 9.7799950883964 9.83691986857938 10.0833274191408 10.1436874405960 10.2000789416213 10.1893010753454 9.47924191103756 9.48483726809335 8.84649755502979 9.11528302691098 9.6025235906225 9.31833321881491 9.55161902931126 9.37993236285535 9.46297290744524 9.46795261786518 9.4435479603811 9.200080462882 9.1426038305719 0.0974614935416707 0.0960263840593194 0.0998154269044992 0.0977888986991892 0.0992119576999958 0.096719736605507 0.0963914315485045 0.10264441057423 0.119974281110688 0.101256196801314 0.101813096905168 0.100315472687518 0.101257942662123 0.104677949269921 0.0998401096577185 0.097726759607311 0.107097627220542 0.106566666187315 0.104157009391489 3 3|0 +|/ 20329872 20331722 20330778.9 20329390 20331979 + gene protein_coding_gene FALSE TRUE AT3G54840.1|AT3G54840.2 ARA6; GTP binding|ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. similar to ARA7, GTP binding [Arabidopsis thaliana] (TAIR:AT4G19640.1); similar to small GTP-binding protein [Mesembryanthemum crystallinum] (GB:CAA06922.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)|similar to ARA7, GTP binding [Arabidopsis thaliana] (TAIR:AT4G19640.1); similar to small GTP-binding protein [Mesembryanthemum crystallinum] (GB:CAA06922.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.451212824875245 5.53583166400857 0.000183553643866976 1 6.24324940131319 19.1312561630728 0.451212824875245 0.0145110573793503
AT4G02820_at 3.840199601794 4.18406347888782 3.5087248689703 3.88421503481773 3.67443603601206 3.59624899221327 4.01404431484309 4.25195659903640 4.40795156259962 4.50648669513249 3.72969970141085 3.93763614685583 3.74141325629254 4.06131736759736 3.79876133348694 4.09850253733748 3.31955775094732 4.12808724686949 4.76063064198181 0.213622437350428 0.216034673248860 0.213114945695384 0.210696662838887 0.212026485290977 0.227171638618322 0.216866664793092 0.213274121879919 0.223756335247258 0.216352681424515 0.216896379394032 0.21147568221341 0.220535571048568 0.218488763129701 0.209609608084600 0.213793748671781 0.211306260000494 0.219313267585359 0.215308450004133 4 4 + 1259768 1260241 1260017.909 1258568 1260665 + gene protein_coding_gene FALSE TRUE AT4G02820.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02150.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); similar to Os12g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066910.1); similar to Os01g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042820.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.55657207397095 -5.53522542283131 0.000183719407287607 1 6.24250962518985 8.07435022457402 -0.55657207397095 0.098192426981879
AT2G18330_at 4.12566939298119 3.90284179096316 4.07361852535168 3.79786786783874 3.17066865504263 3.51505156518506 4.83725883493292 4.53479257281956 2.81358027618595 2.95239557267823 2.42130990253733 2.78267599110455 2.51294764615752 2.23822394125410 2.73475435222214 2.88124872548718 2.61512025431568 2.77341881097014 3.32551973465489 0.220919002462186 0.22840293876953 0.214386125382340 0.222305417241337 0.214682707216127 0.219620593101517 0.221911264725736 0.229465048368114 0.232340462139026 0.216375112268692 0.223229785240057 0.220134077046877 0.217311825662366 0.216316044033960 0.221834690067513 0.214386125382340 0.221009554429956 0.216243201554123 0.223508500530582 2 2|0 +|/ 7975176 7975971 7975662.3 7972717 7976187 + gene protein_coding_gene FALSE TRUE AT2G18330.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G36580.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G16930.1); similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G03060.1); similar to Os02g0697600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047821.1); similar to Os02g0706500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047871.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAL87170.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain CbxX/CfqX; (InterPro:IPR000641); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.560687534701648 -5.53465055380764 0.000183876739776784 1 6.24180807049722 6.81995164106225 -0.560687534701648 0.100278569408593
AT2G30060_at 8.87255658666 9.0684147635039 9.37559328174244 9.49684698583111 9.31169335840038 9.02656865555406 9.46221796526967 9.22797474968916 8.35927478689018 8.39336513185905 9.623835581187 9.43073140282697 9.3634679899716 9.26024487119116 9.23038178681581 9.3545253509887 9.15793667740998 9.11476150402742 8.54475149631499 0.128022237547199 0.125093113966775 0.126447035823731 0.125981992136885 0.126266082851018 0.129562865397152 0.129255573186975 0.130598181186291 0.139989034764339 0.140631432057476 0.123190672822256 0.123190672822256 0.130118842423355 0.142875737961289 0.128232323241153 0.125499839149925 0.141666354164698 0.129562259566951 0.143128933618565 2 2|0 +|/ 12834200 12835601 12834779.3 12833992 12835996 + gene protein_coding_gene FALSE TRUE AT2G30060.1 Ran-binding protein 1b (RanBP1b) Identical to Ran-binding protein 1 homolog b (RANBP1B) [Arabidopsis Thaliana] (GB:Q8RWG8;GB:O04150;GB:O64739); similar to SIRANBP (Ran-binding protein 1a), Ran GTPase binding [Arabidopsis thaliana] (TAIR:AT1G07140.1); similar to unknown [Brassica rapa] (GB:ABB97039.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.514703197316123 5.53433455361884 0.000183963285031875 1 6.24142240708615 18.1049580186182 0.514703197316123 0.0752795478346597
AT3G21090_at 1.87352814213373 1.98286817648134 2.24787403665831 2.23441304265185 3.78978366602044 3.69613957006902 2.25369623428375 1.64445109433772 2.24842960170184 1.96280121236 2.19879158404818 2.23059410744691 2.31127551755943 2.06559155227507 1.83096234931293 2.3639483619159 2.16247481941948 2.5591982726213 2.13541733578685 0.248110641388607 0.262664137412035 0.249609574865991 0.270562099480906 0.264285265941999 0.256882637814970 0.246832463766105 0.258081473809892 0.254277196806925 0.249461436981664 0.253925873046950 0.252948761336328 0.252562492185137 0.257419529149152 0.251854305980573 0.253372912188380 0.245766993466748 0.253644117110229 0.251641714179541 3 3 - 7391511 7391976 7391722.5 7391444 7395047 - gene protein_coding_gene FALSE TRUE AT3G21090.1 ABC transporter family protein Identical to White-brown complex homolog protein 15 (White-brown complex homolog protein 22) (WBC15) [Arabidopsis Thaliana] (GB:Q8RWI9;GB:Q9LJC3); similar to CER5 (ECERIFERUM 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G51500.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G51460.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to Os05g0222200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054952.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1); similar to Os04g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053375.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.576610927166387 5.52734190038356 0.000185889543638946 1 6.23288361179469 4.63079622225842 0.576610927166387 0.108361145492501
AT3G19515_at 6.20405722273525 6.19442524436882 6.52453182675122 6.16957762721354 6.74644783115065 6.50707562452216 6.16564259281862 5.63816086944167 4.47420992150909 4.92036417671297 5.26841998636847 5.82024961420835 5.76983255620365 5.57082542599759 5.25343769049421 5.67789383554071 5.85230003112342 5.24011473062032 5.005780845857 0.188708940979648 0.190825506846645 0.189874297442644 0.192475830493869 0.192661997113387 0.192285683776784 0.188387343645872 0.198756869586874 0.206170663135685 0.186043981647174 0.186956018951087 0.186537633476600 0.184759134151463 0.187225317028469 0.193456664513353 0.185174160323999 0.192624896757844 0.189527008437349 0.186174514443242 3 3|0 -|/ 6766883 6770857 6768665.778 6766674 6771175 - gene protein_coding_gene FALSE TRUE AT3G19515.2 binding similar to apoptosis inhibitory protein 5 (API5)-related [Arabidopsis thaliana] (TAIR:AT1G23935.1); similar to putative fibroblast growth factor 2-interacting factor [Oryza sativa (japonica cultivar-group)] (GB:BAD15974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383) 0.596426332097434 5.52622431240803 0.000186199387623973 1 6.23151810039384 11.4471161291315 0.596426332097434 0.117578040646873
AT1G25550_at 8.93460168311774 8.89686259433866 9.14806167433097 8.96570290515799 9.78739410594216 9.32294288874557 8.33870286042083 8.11406875629814 8.53360214859075 7.94047607668829 8.55167739387009 8.90053833600222 8.64351125970414 8.71407794646838 8.40392185282798 8.36085680216838 8.48181822974242 8.68025225249176 8.21202386186134 0.109478947483069 0.109478947483069 0.119178311269898 0.112808400164330 0.114924838873593 0.117264846327297 0.112527933125446 0.120246896991970 0.117373336022035 0.118527749191832 0.113369046631694 0.109478947483069 0.118693567423858 0.116182186396481 0.119850181263976 0.110457877762871 0.118883925448192 0.111662271942642 0.119299708274833 1 1|0 +|/ 8977174 8977859 8977473.6 8976421 8978080 + gene protein_coding_gene FALSE TRUE AT1G25550.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G68670.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os02g0325600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046702.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.549173741723148 5.52548016714112 0.000186406001681984 1 6.23060875102057 17.3489334109804 0.549173741723148 0.0949208180726537
AT3G23210_at 3.98777588740701 4.3843938554006 4.37455149600721 4.11063713456024 4.52369847273667 4.30449980968084 6.41079683192867 6.00815176568056 5.28081798275486 5.81823453304592 5.66704383621965 5.74668854588593 5.31822969176151 4.97109261271972 5.53396708051146 5.52568486037294 5.04560351271805 5.65851787807958 6.12698753417551 0.271381552628182 0.248941735256366 0.25181566568502 0.256606740087129 0.254598004706417 0.261814316011191 0.251375679739074 0.255606062125056 0.268283826896032 0.24769569590201 0.252730209138511 0.248877315980412 0.248865887776032 0.265200176558074 0.2514555217156 0.24752176998674 0.254103515792236 0.252841301062728 0.247996014822764 3 3 - 8283266 8284325 8283609.091 8283097 8285088 - gene protein_coding_gene FALSE TRUE AT3G23210.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G14410.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE96711.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.589046352283229 -5.52213727360914 0.000187337178549846 1 6.22652249047227 10.3507465828131 -0.589046352283229 0.114416188151687
AT4G27780_at 6.13224984226203 5.95302798229664 6.52510867996055 6.6180631494443 6.77787527180204 6.57604331474919 5.3795583244632 5.11932556380497 5.00863058096786 5.25668604265699 5.11579882494319 5.03482637364408 5.73171147064785 5.26132746269169 5.0480491979684 5.49490751187177 5.58331697120738 4.75974355054577 5.43032059748656 0.224840660296980 0.225977949265386 0.240342025302933 0.225995693171516 0.225753450511695 0.228854061837555 0.225690525382218 0.229996726106499 0.243227883677101 0.232229259848324 0.222902103123895 0.231648800185556 0.233812878152409 0.229923326129330 0.223720844456207 0.224133262235168 0.232564188622455 0.240433014136188 0.226790483297848 4 4 + 13848558 13849585 13849136.909 13847555 13849893 + gene protein_coding_gene FALSE TRUE AT4G27780.1 ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2) Encodes acyl-CoA-binding protein with ankyrin repeats similar to ACBP1 (ACYL-COA BINDING PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G53470.1); similar to membrane acyl-CoA binding protein [Agave americana] (GB:AAT81164.1); contains InterPro domain Acyl-coA-binding protein, ACBP; (InterPro:IPR000582); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.500031636259263 5.5189459162896 0.000188230761710734 1 6.22261959019417 11.3779511381698 0.500031636259263 0.0668488992402979
AT3G05940_at 4.58096326974372 4.81049085573134 4.89998070278803 5.02638783192013 5.05240914387285 5.01586608217978 4.48406455982916 4.74923984454605 3.8681215877864 3.4454668980783 4.16533472922886 4.38105836616177 4.61891459909523 4.63340838812107 4.05161264114517 4.66032646188401 4.02805853579072 4.34525716960543 3.81330655229331 0.246549617197499 0.227880830040925 0.227599482976038 0.224643527044250 0.229241777509553 0.232565635853760 0.224073956588874 0.228807691624686 0.249723847392388 0.224218641877771 0.224213089467517 0.227497679858344 0.225768516489957 0.238950067110643 0.2344809373553 0.224073956588874 0.241712979825652 0.226121236914044 0.235975542710939 3 3|0 -|/ 1777623 1778204 1777915.4 1777370 1780260 - gene protein_coding_gene FALSE TRUE AT3G05940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26740.3); similar to Protein of unknown function [Medicago truncatula] (GB:ABD32854.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.497001328193663 5.51854550502293 0.000188343196933361 1 6.22212977427868 8.86215597337557 0.497001328193663 0.0648239306676037
AT1G29395_at 10.4844298549061 10.5193874295926 9.4434475893258 9.56254305884375 10.6200434788092 9.99346944726527 9.3962921526051 9.19746775105825 9.21936433084817 9.15119468015415 10.9208551411694 10.2760751601623 10.2766999139943 10.5029255671441 10.4617590359733 10.4656295764442 9.55603385380778 10.5776389560765 9.23601669222556 0.131330739392891 0.126792966816354 0.134197982055048 0.138107197859589 0.127805999690014 0.146543630569079 0.131740788869864 0.143751834305557 0.153766051215481 0.137076510626794 0.129326905054876 0.126244651646236 0.130108764489731 0.139233908478293 0.128651565390211 0.126244651646236 0.137888054670652 0.129862938373774 0.136267518759480 1 0|1 /|- 10288425 10289255 10288816 10288184 10289607 - gene protein_coding_gene FALSE TRUE AT1G29395.1 COR414-TM1 (cold regulated 414 thylakoid membrane 1) encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. similar to COR314-TM2 (cold regulated 314 thylakoid membrane 2) [Arabidopsis thaliana] (TAIR:AT1G29390.1); similar to cold acclimation protein COR413-TM1 [Triticum aestivum] (GB:AAO24627.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.591495923020513 5.51740042497412 0.000188665129072881 1 6.22072885940257 19.6930821211370 0.591495923020513 0.115769809199116
AT1G72410_at 3.44552893790036 3.40611529746041 2.32156011174231 2.42092218755317 3.05658060282383 3.09724829894545 2.99535162520777 3.00591664291885 3.58196093466811 3.16491841816177 3.44934033009297 3.50991905205346 3.38541166239404 2.90210104298281 3.15320132057825 2.86630211892095 2.69726725863663 3.08747302488038 3.8917759804543 0.184774047301194 0.180883360901376 0.187166846728794 0.184225341538514 0.186445553737050 0.184713350226676 0.18534658041897 0.184661405412061 0.186845472940970 0.181680617072501 0.181596330858415 0.180686987277134 0.179887804910522 0.185905284656899 0.185148396344214 0.180544902982206 0.189364224772808 0.186517911573587 0.181742548138446 1 1 - 27255964 27259882 27257955.889 27255358 27260743 - gene protein_coding_gene FALSE TRUE AT1G72410.1 COP1-interacting protein-related similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT1G17360.1); similar to hypothetical protein MtrDRAFT_AC152057g10v1 [Medicago truncatula] (GB:ABE86138.1) -0.451995896858139 -5.51734794376856 0.000188679897857157 1 6.22066464715127 6.30745067344177 -0.451995896858139 0.0198762440711490
AT4G31050_at 3.31798561767116 2.93884075900922 2.47651311448118 2.40033880347666 3.47596669508356 3.05764872506054 2.43868484767528 2.34375579014419 1.60234652664833 1.82843208661126 3.17605925669828 3.03725335543210 2.69589236346515 3.03540813215789 3.15344272925700 2.72817431816661 2.57702115496271 2.22983406329647 1.98690154654320 0.212504477329087 0.209289025673771 0.216711370057103 0.204608711277637 0.210417784877260 0.220263894721868 0.203945890944136 0.212820256860663 0.227399188844421 0.208029507178766 0.211944144663066 0.204858699170464 0.206406729887135 0.212179844214230 0.206113455174530 0.205617888709021 0.215460018935612 0.217828644199301 0.204023779618974 4 4|0 +|/ 15114696 15115234 15114962.4 15114256 15115639 + gene protein_coding_gene FALSE TRUE AT4G31050.1 lipoyltransferase (LIP2p) similar to lipoyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G47580.1); similar to Os12g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067184.1); similar to Lipoyltransferase (Lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase) (Lipoate-protein ligase B) (GB:Q3M698); contains InterPro domain Lipoate-protein ligase B; (InterPro:IPR000544); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143) 0.55802118298956 5.51490473121665 0.000189368807447948 1 6.21767475905612 5.12373132321545 0.55802118298956 0.0999463423024245
AT1G48800_at 1.58488438834658 1.43715058022094 1.77433828966959 1.55281600112570 1.05126454615459 1.47019872977496 1.72596366396691 1.73927917560099 2.32781551104285 2.18788936489256 1.19352283597805 1.63464792966245 1.39463883455221 1.28558052793513 1.27276756396578 1.64290476573498 1.35107080981503 1.89628216044447 2.56878782167141 0.177366854414917 0.177702528325317 0.175294927560734 0.174556113265693 0.189170566475939 0.179048694254669 0.180294079085080 0.180757375206059 0.179680866747675 0.179689190377648 0.176559213783003 0.187579630513588 0.178482720560619 0.179747150228223 0.177958074473338 0.182845278715635 0.175742568582646 0.174556113265693 0.174556113265693 1 1 + 18055865 18056610 18056237 18053512 18056643 + gene protein_coding_gene FALSE TRUE AT1G48800.1 terpene synthase/cyclase family protein similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20200.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20230.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G48820.1); similar to Casbene synthase, chloroplast precursor (GB:P59287); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.531117848855286 -5.51315003031083 0.000189865228626826 1 6.21552677709472 3.45219916904751 -0.531117848855286 0.0859335436599719
AT1G10522_at 3.80452861095134 3.49269459130350 3.26527852894944 3.3288096005065 3.26538767316159 3.58537462683145 3.78875887458649 3.57002715619716 3.35306349557276 3.42718425235715 2.03255560614931 2.42175222437805 2.77992223656413 2.69851745118673 2.89023719059785 3.13130222192808 3.33768243647895 2.61742823810919 3.72034698154276 0.253477780426862 0.244010492240801 0.245129294934779 0.243267682862675 0.241917176037625 0.245238705128027 0.248206016576577 0.248742375861683 0.252844586775683 0.245306663117259 0.252405657307791 0.249601582142215 0.241192404030451 0.253360156340282 0.24426752617236 0.241693886207752 0.242290902100475 0.243673359297394 0.246375371781923 1 1|0 +|/ 3470018 3471197 3470436.5 3469637 3471489 + gene protein_coding_gene FALSE TRUE AT1G10522.1|AT1G10522.2 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91480.1); similar to Os09g0382400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063064.1) -0.53215662169045 -5.50784666342284 0.000191374031386174 1 6.20903140298807 6.63204392972673 -0.53215662169045 0.0867885733485842
AT3G49390_at 6.59640611336412 6.65602622025335 6.63704698624493 6.45968940840797 6.96935713860464 6.66667771202696 6.49538272605071 5.44698046110996 5.1557597921398 4.72180393646408 5.64846351815077 6.37670674691871 5.58432103422445 5.70353718576614 6.14641055444084 5.48726817657448 5.34536568091176 5.85726197215228 3.9043607341085 0.222451726431672 0.230334986780000 0.242399184730806 0.237585957850861 0.223860494523167 0.229397225702661 0.221419198381764 0.230009577189806 0.227158513869972 0.227415732102460 0.221422905480159 0.232841563986884 0.221127586961635 0.221127586961635 0.232682270389127 0.227597354726224 0.230862327899364 0.234872183892829 0.229670855797722 3 3|0 -|/ 18325905 18327420 18326889.6 18325512 18328983 - gene protein_coding_gene FALSE TRUE AT3G49390.1|AT3G49390.2 CID10; RNA binding / protein binding|CID10; RNA binding RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins. similar to CID11, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G32790.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.779592984432445 5.50419836175472 0.00019241936968273 1 6.2045601584404 11.6722666855311 0.779592984432445 0.191596790280828
AT3G57540_at 4.93675785883593 4.78982934791099 6.25292374842694 6.46768584006886 4.62243279159374 5.27896972428188 4.87364267653914 5.44233843497609 3.73242993949703 4.35703885492308 4.36654539160062 3.9945085235113 4.94803609020518 4.88659204993189 3.87609016124095 4.77943269495819 6.20007015053764 5.15985310650248 4.0472263642732 0.293149301163395 0.293149301163395 0.295117076031506 0.293149301163395 0.293149301163395 0.2986984416753 0.302731819581620 0.296101223206487 0.306986176346404 0.293445260572607 0.298397707448659 0.294596122775542 0.295348446851911 0.293149301163395 0.300430900121961 0.295763252646774 0.293149301163395 0.2966371806004 0.293149301163395 3 3 - 21312631 21313559 21313197.364 21312374 21314038 - gene protein_coding_gene FALSE TRUE AT3G57540.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT2G41870.1); similar to remorin-related [Musa acuminata] (GB:ABF70164.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.68784345734529 5.50408191681627 0.000192452834181398 1 6.20441740775898 9.7440505898086 0.68784345734529 0.156914529043951
AT2G26190_at 8.204995612681 8.18415269937576 8.63906944940215 8.47625832919419 8.26277295106276 8.12138559151514 6.87312085247387 6.64417679211332 8.48267532261315 7.42827787377489 8.16902817677941 8.58711674914479 7.54220694015051 7.82921470584211 7.56325788461134 7.73708277937073 7.49283627403209 8.01547419851504 7.4962435146812 0.157677525290112 0.153976814477374 0.155374925726838 0.154003770334885 0.148383687263714 0.153705690672845 0.155428438510923 0.165471318583634 0.150867058292954 0.157850475253247 0.156915785406878 0.150391071963767 0.149615515122571 0.158004299501299 0.155499458761355 0.151555106268218 0.160973589684592 0.152498902945468 0.151648041545447 2 2|0 -|/ 11154988 11155714 11155336.3 11154717 11157588 - gene protein_coding_gene FALSE TRUE AT2G26190.1 calmodulin-binding family protein similar to EDA39 (embryo sac development arrest 39), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G33050.3); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46201.1); similar to Os05g0197300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054871.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.481444200499291 5.50093506611549 0.000193359538740881 1 6.2005587379571 15.7604545933500 0.481444200499291 0.0545459010952243
AT3G06790_at 6.78042240871126 6.84044931724627 6.36736876244499 6.19318224928245 5.80983081291181 6.28439071152944 6.3426279028199 7.24074140522546 5.26010653666418 5.7998033451656 3.94951012480777 3.96277236944681 5.5177152979011 4.59454540026966 4.99495158919557 5.4386558642606 5.21833862201963 4.85302890286822 5.94122140871893 0.2289993563583 0.225775603152195 0.227987345760671 0.230221692910034 0.230733990362764 0.228025964393795 0.230273852009285 0.22888929342433 0.235014470706 0.226554300541675 0.228799461064088 0.232271392512693 0.225406766409198 0.226427199391170 0.230627115895780 0.223150668372337 0.237453031701824 0.226926058299012 0.229237457873284 3 3 - 2144610 2145527 2145106.909 2144390 2145782 - gene protein_coding_gene FALSE TRUE AT3G06790.1|AT3G06790.2 plastid developmental protein DAG, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15000.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15000.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1); contains domain SUBTILISIN/KEXIN-RELATED SERINE PROTEASE (PTHR10795); contains domain SUBTILISIN-LIKE PROTEASE (PLANT) (PTHR10795:SF17) -0.744110558314307 -5.50074851435409 0.000193413432485378 1 6.20032993220173 11.7239934637027 -0.744110558314307 0.178654039032835
AT2G34250_at 10.083313385964 10.2583971904474 10.4094092520740 10.3635070838854 10.0811336901393 9.89321207815482 9.46811693847618 9.36995557262525 8.7737360926005 8.77509642720725 9.25008053980926 9.74475970163896 9.13676874456027 9.34741071495454 9.526947848617 9.56360264061363 9.05120826917898 9.02788593704464 8.7778456429591 0.140062705523061 0.135899443079305 0.135265898917941 0.135811329336853 0.136727575801622 0.137704969070563 0.142408892913838 0.146967142244368 0.156249621064769 0.146079266126723 0.139584106406716 0.134350842546868 0.143284739857882 0.144405923439094 0.148073773498344 0.134350842546868 0.139188585655096 0.146538612005828 0.147943469257527 2 2|0 +|/ 14470795 14471620 14471322.125 14469138 14471947 + gene protein_coding_gene FALSE TRUE AT2G34250.1|AT2G34250.2 protein transport protein sec61, putative|protein translocase similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G29310.1); similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G78720.1); similar to putative integral membrane protein [Phaseolus vulgaris] (GB:AAF18411.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE84066.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE85367.1); contains InterPro domain SecY protein; (InterPro:IPR002208) 0.473696708074195 5.49858181585482 0.000194040550876922 1 6.19767201790771 19.0442018675413 0.473696708074195 0.0482420825969462
AT3G06590_at 6.90284940999238 6.96106856983205 6.84130495323066 6.79259561116465 7.65161545789446 7.52843892334498 7.48136300544654 7.24089899911556 6.52653505045582 6.93634172661335 7.6585251027278 7.57366291172355 7.57390269309098 7.42848224627802 7.57377326786606 7.82811466931636 7.82360190592184 7.59132895451384 6.76043822602392 0.157322393192613 0.157335685260758 0.159376472743639 0.152422849142164 0.150608570406795 0.158743210557652 0.157567164186898 0.162912558869143 0.173168335710752 0.153898648234882 0.154472349761122 0.151845043318613 0.153410254072777 0.161487966470436 0.159259798305940 0.153704488353707 0.162842117808724 0.158513279997823 0.161766898581887 3 3 - 2054683 2055176 2054976.636 2052699 2055420 - gene protein_coding_gene FALSE TRUE AT3G06590.1|AT3G06590.2 transcription factor| similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G17100.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE82804.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.473631354105417 5.49356316204066 0.000195501444503026 1 6.19151233492232 14.3612813512331 0.473631354105417 0.0485656470769482
AT1G16780_at 3.52357483757406 3.16938821730271 2.65550363245038 2.60458833152755 2.80534678766562 2.85716774212344 3.88069505274219 3.48728125508024 4.01570605263953 4.81904114119286 4.19085725295933 4.62835137970043 3.81045524077308 3.91185482964772 4.68624931736708 4.03976222534364 3.0322073250549 4.25285108189207 4.26269454851096 0.228469024437448 0.219843946149279 0.226873992473893 0.224701799412253 0.236324618842028 0.229104022648517 0.228838676143093 0.220555207016945 0.234246116695279 0.22586201831023 0.223483150226521 0.221421760939739 0.223712008495148 0.219843946149279 0.227036155252131 0.221538099462538 0.229858587030785 0.221957851185743 0.219843946149279 1 1|0 -|/ 5739480 5740316 5739958.6 5739292 5743562 - gene protein_coding_gene FALSE TRUE AT1G16780.1 vacuolar-type H+-translocating inorganic pyrophosphatase, putative Identical to Putative pyrophosphate-energized membrane proton pump 3 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 3) (H(+)-PPase 3) (AVP1-like protein 2) (AVPL2) [Arabidopsis Thaliana] (GB:Q9FWR2); similar to AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) [Arabidopsis thaliana] (TAIR:AT1G78920.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51797.1); similar to vacuolar-type H+-translocating inorganic pyrophosphatase [Cyanidioschyzon merolae] (GB:BAE19660.1); similar to H+-translocating pyrophosphatase [Zea mays] (GB:ABK51382.1); contains InterPro domain Inorganic H+ pyrophosphatase; (InterPro:IPR004131) -0.540661774877609 -5.48698612426922 0.000197433703224146 1 6.18343310041283 7.34038697991164 -0.540661774877609 0.092466971998068
AT4G16480_at 6.43994269721543 6.62347407288873 5.79166366199004 5.64656056119303 6.32801866745552 6.60826675166858 6.43572066945728 6.8241549863759 7.1420365246226 6.31199231395682 5.91572878749222 6.04972304876572 6.05714163768292 5.68425166962393 6.39688961239643 5.99291026444722 6.14043161901477 6.28146222830564 6.52016377985958 0.196110733135155 0.187005638492791 0.196805719123897 0.192817549196099 0.19306168356466 0.191457388314865 0.192749981559681 0.19044746481247 0.194236104262035 0.189523063583798 0.187005638492791 0.187340906580075 0.190294633380684 0.192990528232023 0.191708087181260 0.187005638492791 0.196327280977864 0.193142918531351 0.192539879732555 4 4 + 9292511 9293027 9292752.182 9291141 9293225 + gene protein_coding_gene FALSE TRUE AT4G16480.1 ATINT4 (INOSITOL TRANSPORTER 4); carbohydrate transporter/ myo-inositol:hydrogen symporter/ sugar porter Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol. Identical to Inositol transporter 4 (Myo-inositol-proton symporter INT4) (Protein INOSITOL TRANSPORTER4) (INT4) [Arabidopsis Thaliana] (GB:O23492); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G30220.1); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G35740.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAF91432.1); similar to Sugar transporter [Medicago truncatula] (GB:ABE88239.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAF91431.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.540221271793886 -5.48669004334628 0.000197521164689885 1 6.18306921156009 12.6986660408368 -0.540221271793886 0.092249479931623
AT3G28860_at 8.18479468929638 8.34395482578936 5.94746877619881 5.99386863065625 7.28988893885290 7.10077902769132 7.74318119614463 7.67472152611992 8.23446859479089 8.09557338820077 9.44928067653992 9.7096726872651 8.946281656617 8.9861867379305 8.98948273475225 8.51617315509922 7.56297067339648 9.24650526072518 9.05173100448425 0.179055555693762 0.174966218970646 0.184420861465296 0.200679340689971 0.179959233603450 0.177121639519553 0.174966218970646 0.179319935229101 0.180726388257493 0.182851415058975 0.182998931656342 0.181020131423614 0.174966218970646 0.186239600670419 0.186935103793589 0.174966218970646 0.196574435116951 0.174966218970646 0.176170873128871 3 3 - 10871555 10872077 10871809.455 10871275 10878743 - gene protein_coding_gene FALSE TRUE AT3G28860.1 ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. Identical to Multidrug resistance protein 11 (P-glycoprotein 19) (MDR11) [Arabidopsis Thaliana] (GB:Q9LJX0;GB:Q8GZ77;GB:Q8H6F5); similar to PGP10 (P-GLYCOPROTEIN 10), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G10680.1); similar to PGP2 (P-GLYCOPROTEIN 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G25960.1); similar to ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G36910.1); similar to H0423H10.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09461.2); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59581.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59582.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.469216757011174 -5.48651169121532 0.000197573869285465 1 6.18285000593006 15.9780372981517 -0.469216757011174 0.0451052898813577
AT1G28570_at 5.65704345329228 6.19784073998787 5.71686496314236 5.60246765792933 5.84577846429229 5.53018038806189 6.21436298743033 6.29886448718973 4.79305377108997 5.70608645384987 4.15410204041568 4.39551528922944 4.5446540003205 4.63772599539929 3.9194254243219 4.30827283415724 4.40349518320546 4.16128801980131 4.66149853845745 0.234822005813557 0.225621742633994 0.239372529317219 0.224707132299639 0.220051725152336 0.236090047100373 0.222194933641054 0.226429206014733 0.231008423697242 0.223892018945120 0.225570014297783 0.220816160274231 0.219771285428935 0.221569927000666 0.232176667606554 0.219712548216590 0.225326338802731 0.227987480296281 0.224806801940805 1 1 - 10041854 10042532 10042140 10041627 10044136 - gene protein_coding_gene FALSE TRUE AT1G28570.1|AT1G28570.2 GDSL-motif lipase, putative similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28580.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087)|similar to carboxylic ester hydrolase/ lipase [Arabidopsis thaliana] (TAIR:AT1G31550.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.578095727363997 -5.48579198156893 0.000197786701670327 1 6.1819653808231 10.5674784440768 -0.578095727363997 0.111118222820983
AT3G16760_at 5.72721969563629 6.15405140061066 6.16824848283108 6.40451973941177 6.79171204858017 6.20670432411384 6.44160745073383 6.13410796264759 5.53482487899637 6.20953647562582 6.52265295849898 6.92644457276897 6.67997249871667 6.71629488705422 6.68545329123658 6.7660193032755 7.21947033365275 6.80504942853244 5.56937096189912 0.202822341962924 0.198904046768434 0.206628072027057 0.207293624016819 0.207977745877928 0.209077689518699 0.200534739185448 0.196333939652581 0.212421728034186 0.194591595235151 0.209966141397795 0.194104741549976 0.20173354659376 0.212380876237861 0.205516083164520 0.199432507102674 0.206175745263067 0.197123131400159 0.197387063299024 3 3 + 5703822 5704398 5704152.636 5703019 5705319 + gene protein_coding_gene FALSE TRUE AT3G16760.1|AT3G16760.2 tetratricopeptide repeat (TPR)-containing protein similar to chloroplast outer membrane translocon subunit, putative [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to Os03g0340700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050066.1); similar to unnamed protein product [Candida glabrata] (GB:XP_447784.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28780.1); similar to Os03g0340700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050066.1); similar to unnamed protein product [Candida glabrata] (GB:XP_447784.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.648737537518517 5.48380353251366 0.000198375993563125 1 6.17952081098721 12.5342282704327 0.648737537518517 0.142157784578397
AT3G58990_at 10.5895335872718 10.7790635603668 10.0407560068695 10.0377936736576 10.658653233076 10.3406123414625 10.5469290350367 10.4966023757559 7.92290321474014 9.86003828828587 10.1267358751070 10.3127659021381 10.1882237832158 10.3716865874896 9.64852895015442 10.0872943005760 10.4177479678381 10.2870092063588 8.79487534845363 0.101851002896360 0.0961709239565257 0.099670741396693 0.0976453944116898 0.0972530719862478 0.0996169982941545 0.0987276418900827 0.0984156462935187 0.139687713748834 0.108368133226189 0.103758502604030 0.098458131116621 0.0977875820347574 0.0990569439699284 0.103265495897489 0.0975041804057128 0.102714640018852 0.103925955716917 0.132698194857214 3 3 - 21808505 21809061 21808808 21808035 21809280 - gene protein_coding_gene FALSE TRUE AT3G58990.1 aconitase C-terminal domain-containing protein similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43090.1); similar to putative protein [Oryza sativa] (GB:CAC39061.1); similar to Os02g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047617.1); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573) 0.493574230970897 5.48310439294508 0.000198583632194864 1 6.17866113016902 19.9558786544052 0.493574230970897 0.0646616076634567
AT2G17380_at 8.73979656905703 8.76201290683618 8.66417103248317 8.77590797966225 9.0150314133032 8.88580680266483 8.39664939812652 8.13473609814692 8.2673507382284 7.49143991309618 8.65315482301387 8.6603518346521 8.48086121355762 8.70797074262909 8.34411546531547 8.54111117235646 8.33181403957923 8.23104313465392 7.8273984903321 0.151560395564593 0.151536542675654 0.159614313720694 0.160946234392952 0.151223987969175 0.160035987954547 0.152194941465223 0.154379168290814 0.165597130018797 0.176817516400713 0.156703883314927 0.153125277989778 0.152066306754319 0.151486643825313 0.153021101419368 0.150068362736540 0.156641929682106 0.158958682610492 0.152765182146388 2 2|0 +|/ 7561041 7561944 7561367.9 7560084 7562127 + gene protein_coding_gene FALSE TRUE AT2G17380.1 AP19 (associated protein 19); ATP binding / protein kinase Encodes clathrin assembly protein AP19. similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT4G35410.2); similar to AP-1 Gol (GB:AAB39510.1); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.479335159993764 5.48105894660605 0.000199192440812192 1 6.17614548944837 16.8496969502543 0.479335159993764 0.0542509914678923
AT4G14360_at 7.72239394099356 7.59975495720732 6.61373127439566 6.76467817070164 7.61383314920017 7.52848405442142 8.83591126914868 8.7651618171562 8.64295154889311 8.41433984762478 8.95426665245309 8.98419785577557 8.60779683979759 8.85068757299013 8.96253808376132 8.32333846657021 7.9490587385673 8.51263435771359 8.34124550703319 0.171067670106136 0.173505314643381 0.178279293481871 0.181385362487979 0.177211093197282 0.183390551103283 0.188910437523211 0.175201295435947 0.188638147528890 0.168399993121507 0.170308490494024 0.171664421741661 0.174394266754009 0.178717162897238 0.167040595361084 0.170524779639803 0.180899304469837 0.184281897979332 0.167676039140332 4 4 - 8267945 8268616 8268212.545 8267285 8271117 - gene protein_coding_gene FALSE TRUE AT4G14360.1|AT4G14360.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47791.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE90857.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.461868990421737 -5.47451069299651 0.000201154851391662 1 6.16808690299161 16.2351154735551 -0.461868990421737 0.0387407665756993
AT4G22930_at 7.06797423409801 7.3372185134518 6.38805248283812 6.15146898362461 5.91186054165853 6.40872929802605 7.91775584103506 7.7208426162874 6.66563633668145 6.64197888956777 6.26336548028162 7.19054253442687 6.30911662530388 6.5824315392251 7.41395687868075 6.33706474008374 6.72286443455696 6.23596150516743 6.1645093479811 0.239442986319297 0.239076615321782 0.243567833792490 0.243771726153812 0.240417156621098 0.248650186590441 0.240523001574288 0.247916371883047 0.252579923685547 0.242585927335064 0.242190644966033 0.243031863255307 0.242666775629092 0.241489108117287 0.248988288780986 0.244976803102463 0.244118422451761 0.244263941970232 0.239451324740184 4 4 + 12020387 12021180 12020811.455 12018895 12021602 + gene protein_coding_gene FALSE TRUE AT4G22930.1 PYR4 (DIHYDROOROTASE, PYRIMIDIN 4, dihydroorotase); dihydroorotase Encodes dihydroorotase (PYR4). Identical to Dihydroorotase, mitochondrial precursor (EC 3.5.2.3) (DHOase) (PYR4) [Arabidopsis Thaliana] (GB:O04904); similar to dihydroorotase [Beta vulgaris] (GB:CAC80990.1); similar to Os01g0747500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044233.1); similar to putative dihydroorotase [Oryza sativa (japonica cultivar-group)] (GB:BAB56025.1); contains InterPro domain Dihydroorotase homodimeric type; (InterPro:IPR004721); contains InterPro domain Dihydroorotase; (InterPro:IPR002195); contains InterPro domain Amidohydrolase 1; (InterPro:IPR006680) -0.577357599437778 -5.47383398388646 0.000201358819378435 1 6.16725367340726 13.4242983931904 -0.577357599437778 0.111364086537357
AT1G51700_at 7.42563379706267 7.56397897822369 8.40923864664214 8.54951099065331 8.27653410864158 8.30357499210497 8.83712569274013 8.8389638740119 7.35131829574597 7.50159912443654 8.05781337792466 8.22180675024983 8.14348712993202 7.95753008214208 7.69092458381611 8.07377498021629 8.67512005567089 7.9631442634781 7.34773712322006 0.197281391745459 0.186293593160789 0.194579880079209 0.189038182570021 0.191136985583594 0.191269473611851 0.190042441301800 0.187560106760389 0.192723688503389 0.194594325837856 0.191869995488711 0.186293593160789 0.186293593160789 0.189028028391601 0.186444796779037 0.186293593160789 0.200868838181128 0.199678541682120 0.202613428649175 1 1 + 19177936 19178471 19178204.091 19177738 19178857 + gene protein_coding_gene FALSE TRUE AT1G51700.1 ADOF1 (Arabidopsis dof zinc finger protein 1); DNA binding / transcription factor Encodes dof zinc finger protein (adof1). Identical to Dof zinc finger protein DOF1.7 (AtDOF1.7) (DOF1.7) [Arabidopsis Thaliana] (GB:O82155); similar to ADOF2 (Arabidopsis dof zinc finger protein 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G21270.1); similar to Dof1 [Glycine max] (GB:ABI16003.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.458010535397731 5.47368290298798 0.000201404386934650 1 6.16706763677011 16.0246543020415 0.458010535397731 0.0344158295866959
AT1G63580_at 0.859213186975369 0.710316658081368 0.613491786163415 0.844365377433112 0.781728913684177 0.62915935613074 1.36597459648459 1.5286922680082 2.04565805224258 1.56637163751290 1.00210590115048 0.858993068949627 1.16194602167817 1.04504730134262 1.14036764127923 1.31749443155929 1.03226952127101 1.38444737484532 1.47075543598776 0.241489656187364 0.241716217948374 0.245803454752273 0.235425599085509 0.241325938564729 0.232915468933910 0.229984415766008 0.240264461398471 0.239437784941453 0.234170729455067 0.231149944957954 0.24276145213284 0.235097925475843 0.228547349072725 0.238134190288824 0.228547349072725 0.232842429032012 0.230637301338335 0.231199753680284 1 1 + 23581247 23581699 23581505.364 23580996 23581917 + gene protein_coding_gene FALSE TRUE AT1G63580.1 protein kinase-related similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G63590.1); similar to Protein kinase [Medicago truncatula] (GB:ABE84759.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -0.487645309928065 -5.47096916344356 0.000202224748501951 1 6.1637253172382 2.32266557604039 -0.487645309928065 0.0612396669170033
AT1G31920_at 7.0049822106292 7.2961359498322 6.2369690822068 6.75205652761311 7.32141491464784 6.96134636049116 8.59734684408973 8.6753953074681 7.85467350927745 8.779281732982 8.1654986531748 8.91092472335256 8.10050132416095 8.39145313662541 8.38538504273033 8.98853378049106 8.18656965045733 8.1672543327157 8.95756437388408 0.230342631500668 0.224860602498476 0.235504072546145 0.237233580865761 0.221995961491618 0.228438296001996 0.221830303084465 0.232427757957315 0.266256746986594 0.224197473885452 0.222360962475997 0.221714289312444 0.225697142021756 0.225575804603246 0.222371929653693 0.221340782301450 0.228329926637212 0.234258307399493 0.219419560264643 1 1 - 11461994 11462411 11462218.364 11461835 11463828 - gene protein_coding_gene FALSE TRUE AT1G31920.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32557.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.597004907508034 -5.46937657166056 0.000202707841416933 1 6.16176321851475 15.8269667092113 -0.597004907508034 0.120621273472725
AT3G56260_at 3.77119639141866 3.89770176852584 2.60596996682839 2.60965472722506 2.58857571408138 2.83421020692663 3.84570629059443 4.37846842318178 3.19967715528727 3.52746949735109 3.27812066777443 3.74620835523754 3.18785451289816 3.47014461463341 3.29463312685167 3.08104232294885 3.16545069049882 3.11052104894957 2.57368544754764 0.251482326209945 0.242492671487151 0.232769213638618 0.236386251771757 0.233618764588691 0.242186212491611 0.246295642183126 0.246428412057977 0.233419947420662 0.238707204975038 0.236110356366162 0.235689633374532 0.232040090546654 0.245710445897593 0.232040090546654 0.236098473689775 0.235885376586904 0.242202542320493 0.235084542453777 3 3 - 20879240 20879706 20879460.818 20878950 20880003 - gene protein_coding_gene FALSE TRUE AT3G56260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40475.1) -0.56109800695971 -5.46757108501567 0.000203256997611286 1 6.15953827794988 6.51244757819913 -0.56109800695971 0.103860048208686
AT1G01500_at 7.11329358064828 7.27123996139217 7.37686332967114 7.33700529349287 7.297261538112 7.27022353321742 7.13802335724119 7.39785895968765 6.03916020038593 6.11062749289334 6.75402245311606 6.98870146717102 7.29065930267536 6.8814298106951 7.00421307172981 6.89091542894758 6.81118185240005 6.66865910418848 5.99325932157934 0.173755729790616 0.173283665757118 0.169869136504444 0.175157818005935 0.175197461917663 0.176020369803265 0.171795938930222 0.177258069783781 0.186549189501009 0.18357074765894 0.175877463289224 0.169372421343163 0.169069087069184 0.181724609904536 0.173746165076524 0.169069087069184 0.179232129297521 0.175204192027241 0.180702853582041 1 1 + 185752 186511 186026 185133 186923 + gene protein_coding_gene FALSE TRUE AT1G01500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65010.1); similar to Os03g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051432.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996) 0.476887465980132 5.46683920661342 0.000203480055802156 1 6.15863620116321 13.7546737690087 0.476887465980132 0.0532776028033959
AT2G20010_at 6.93048045659921 6.96623794660775 6.97657852620479 7.28213073615312 6.82061350436303 6.89432583465465 5.99147725391077 6.00842705719261 5.95335902252895 6.04127135193961 6.50884284956214 5.98709572295891 6.24678967943694 6.29888410753382 6.24280983127846 6.2905487459919 6.55299822965322 6.21269360809427 5.56841803092137 0.194007864661711 0.187029924663975 0.189739504037419 0.190985564522114 0.187029924663975 0.19758295899012 0.192671547940207 0.194062764243199 0.193197210018913 0.192592189933518 0.191695728820575 0.190263944689831 0.187029924663975 0.187319164852087 0.19654098848157 0.187029924663975 0.196314636219700 0.197661248526981 0.194657482729964 2 2 - 8645104 8645621 8645399.818 8644828 8648637 - gene protein_coding_gene FALSE TRUE AT2G20010.1|AT2G20010.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28473.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05347.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE78559.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25800.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33420.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28473.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05347.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE78559.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528) 0.478744925058359 5.46611216164818 0.000203701898559413 1 6.15773998639977 12.8072500720993 0.478744925058359 0.0548235302824426
AT2G30200_at 6.29421278020529 6.24426914193193 4.98981663004466 5.42198810505475 5.54505778268926 5.58350490817954 7.45211358635261 7.35849006023247 6.43797770868039 6.80473541756783 7.07621420720733 7.75512105971347 6.57390521765694 7.10394123246574 7.49483027023576 6.74208049690108 6.24896169755516 6.71095069947189 6.35869009979943 0.197537289433842 0.190673756687813 0.192625932454506 0.188941649928169 0.195867616793164 0.193668503908886 0.196617685922004 0.192970440879784 0.203866124677295 0.194623585360541 0.194826203717214 0.193995606373398 0.196354601135959 0.187862208194055 0.215985226577853 0.191251981281655 0.189874224233209 0.192045363203973 0.194651088495212 2 0|2 /|- 12890452 12890713 12890623.125 12890032 12892845 - gene protein_coding_gene FALSE TRUE AT2G30200.1|AT2G30200.2 [acyl-carrier-protein] S-malonyltransferase/ transferase|transferase similar to [acyl-carrier protein] S-malonyltransferase [Brassica napus] (GB:CAB45522.1); contains InterPro domain Acyl transferase region; (InterPro:IPR001227); contains InterPro domain Malonyl CoA-acyl carrier protein transacylase; (InterPro:IPR004410)|similar to [acyl-carrier protein] S-malonyltransferase [Brassica napus] (GB:CAB45522.1); contains InterPro domain Acyl transferase region; (InterPro:IPR001227) -0.511365000443408 -5.46281300302988 0.000204711804151078 1 6.15367198002329 12.8597074670864 -0.511365000443408 0.077297553367874
AT2G20780_at 5.69510720544493 5.47541344586452 5.04120184090397 4.98856313015106 5.07859499478708 5.45370043756319 3.09803016767487 3.28718789334821 3.65786579313163 3.11290795827424 3.62213699130195 3.66579526720617 3.06939964296337 3.11024562336979 3.55961279915897 3.31788401818361 3.85839635367969 3.54074222442966 2.76652682486919 0.216011540788933 0.210541269512978 0.228596342695947 0.217759847939087 0.225347516983055 0.222775709986721 0.214732823706882 0.223118534433354 0.214006494202073 0.213982750522460 0.210541269512978 0.213249264114407 0.210541269512978 0.210590570296739 0.215505333217440 0.213300329672118 0.215553402183391 0.216341836846439 0.21768650012249 2 2 - 8954594 8955134 8954889.545 8954323 8956406 - gene protein_coding_gene FALSE TRUE AT2G20780.1 mannitol transporter, putative Identical to Probable polyol transporter 4 (PLT4) [Arabidopsis Thaliana] (GB:Q0WUU6;GB:Q9SKT9); similar to ATPLT5 (POLYOL TRANSPORTER 5), D-ribose transporter/ D-xylose transporter/ carbohydrate transporter/ galactose transporter/ glucose transporter/ glycerol transporter/ hydrogen:sugar symporter/ mannitol transporter/ monosaccharide transporter/ myo-inositol transporter/ sorbitol transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G18830.1); similar to Os04g0678900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054276.1); similar to Os04g0529800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053383.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE84116.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.520253422856578 5.46247844994164 0.000204814511045753 1 6.15325935210379 8.0882882930314 0.520253422856578 0.0825456089661003
AT1G22180_at 7.3287993883544 7.1941361919818 6.80752927933246 6.57957302959662 6.91610015890979 6.21596151368919 4.75064730782826 4.43524599170103 4.25894165462606 4.31505253807165 4.8346334071496 5.35406061624139 5.24577340796262 6.03490978988418 4.56630873515449 4.72422921888887 5.0847068255234 4.2999812036941 4.7357877894588 0.204495050773589 0.207021274343220 0.208404529959305 0.210686861056394 0.201864012084978 0.208316710821562 0.20879379831705 0.201563616791071 0.209906912916005 0.205450350390157 0.201985888135912 0.204615331157323 0.202976483891842 0.204553280115514 0.203372370091522 0.203163645752154 0.204557343404628 0.211343175737332 0.204565667864828 1 1 - 7828441 7828979 7828758.273 7828315 7830381 - gene protein_coding_gene FALSE TRUE AT1G22180.1|AT1G22180.2|AT1G22180.3 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G08690.1); similar to Os02g0752000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048139.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE91555.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251)|similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G08690.1); similar to Os02g0752000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048139.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE91555.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.642032590962899 5.45949478449886 0.000205732914674728 1 6.14957849624346 11.0058338049814 0.642032590962899 0.140565810890549
AT1G78320_at 1.81127550105089 2.03349194245263 2.12441426787789 2.00661168307015 1.53838578002470 1.75517832628270 3.19350793910110 2.93874091169988 3.54299145986742 4.01811810407913 3.49727675193324 3.8079395332993 3.16549332102803 3.44838190179005 3.17936326272723 3.56143808388227 2.84705471819328 2.92370808344954 3.45510350205753 0.190803566507329 0.196242377942982 0.200332681977568 0.22372542649886 0.199873633540995 0.196619081416381 0.1900269782326 0.195803205925654 0.205174675827206 0.202338057917625 0.194322311503930 0.192967018632491 0.203248481106871 0.190197499944859 0.195459008332709 0.191866865582144 0.209087596352394 0.198230986148658 0.196434221679848 1 1 - 29472492 29473112 29472665.455 29472330 29473267 - gene protein_coding_gene FALSE TRUE AT1G78320.1 ATGSTU23 (Arabidopsis thaliana Glutathione S-transferase (class tau) 23); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17180.1); similar to 2,4-D inducible glutathione S-transferase [Glycine max] (GB:AAC18566.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.503172812112879 -5.45944704129208 0.000205747646073308 1 6.14951958390161 5.6631522834646 -0.503172812112879 0.0724276342338931
AT4G05580_at 2.18124398214311 2.26801610858409 2.27921145977397 2.12984882920432 1.80851026030752 1.64341847523378 1.89288963016424 2.41954740506797 3.00142640964663 3.15592999151133 2.23104356509018 1.91402970509634 1.95906013866943 1.95212235931233 2.02490570484745 1.85596360039297 2.31393960045046 2.44735377408978 2.73974647082952 0.173639042158046 0.172272001443038 0.172895210969631 0.168377557409722 0.171763101604265 0.168097890614237 0.168608588413983 0.174011008308746 0.176496674480302 0.17335973063385 0.164870067083093 0.167994517279846 0.172876407431858 0.173436886471781 0.165094090036441 0.173013538385381 0.167303703853057 0.165099306736652 0.175257431267835 4 4 + 2841646 2841963 2841827.4 2841645 2841995 + gene protein_coding_gene FALSE TRUE AT4G05580.1 similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT1G42630.1) -0.551787838347748 -5.45064197248444 0.000208483760081142 1 6.13864762622979 4.60433740047126 -0.551787838347748 0.100082212651834
AT1G30640_at 5.36138343642842 5.63248164848489 6.11874964230177 5.85860600883368 5.23188374746976 4.86038315477978 4.0249965595663 3.67941054844334 4.10425800965081 3.98740473603936 4.25551690742669 4.10700847498028 4.08216969582024 4.57228063586640 3.81108593483061 4.36578532064836 4.33968085257031 3.71590348804964 3.48400812269309 0.226037839196429 0.221020561696505 0.221758626054021 0.231596953086342 0.221966951650737 0.229279713031122 0.220798807933974 0.220032101608578 0.22949943378708 0.223153383939352 0.219620196928979 0.236924901779349 0.219731186108595 0.229811971828394 0.222901884084904 0.223423875886456 0.227297723296905 0.222369434546414 0.219135166471072 1 1|0 +|/ 10863750 10864650 10864422.875 10860637 10864682 + gene protein_coding_gene FALSE TRUE AT1G30640.1 protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT2G20470.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G23310.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase [Triticum aestivum] (GB:BAD19066.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95893.1); similar to protein kinase [Triticum aestivum] (GB:BAD19068.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.570229773880909 5.44821801343223 0.000209243758955865 1 6.13565222102993 9.1033547782394 0.570229773880909 0.109259228237865
AT3G62950_at 9.99887997936409 10.0801844326473 9.62421383984209 9.78996044537904 10.3493367584000 10.0486718174148 10.5103039759549 10.5736171985112 10.0280538160003 9.515553636506 8.61829713544465 9.16059182804226 9.10934632712578 8.92997806774804 8.61084457919799 9.68222839474348 9.39959759059345 8.82674977211733 9.4889078944900 0.124094911545516 0.125400328812759 0.123682264583354 0.122034023347763 0.124123017935733 0.130929771561652 0.119957919485612 0.123892051615532 0.129431528263624 0.122261566903370 0.129010800956980 0.122998723675618 0.127806339766208 0.120330362584315 0.130259341362418 0.118914701420935 0.123530099975537 0.128289576454643 0.125062519733102 3 3 + 23277329 23277563 23277446.182 23277224 23277909 + gene protein_coding_gene FALSE TRUE AT3G62950.1 glutaredoxin family protein Identical to Glutaredoxin-C11 (AtGrxC11) (GRXC11) [Arabidopsis Thaliana] (GB:Q9LYC6); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G47870.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.486500792574619 -5.44583057390643 0.000209995186771522 1 6.13270091092814 19.4817507197102 -0.486500792574619 0.0620323904382212
AT3G56950_at 7.42530113096424 7.68574601364146 8.02059132832304 8.04611129725818 7.62984492791243 7.4976812512617 7.16377487648679 7.20568771896251 5.13248752786099 6.40210137749816 6.49651626310515 6.8350538539203 6.58410357261481 6.35656299346688 6.21703071317208 6.54092256062793 6.85231418857999 6.2523251064208 6.46625339577291 0.186077268751641 0.192808240583505 0.189444170281421 0.198088811110058 0.201838269631143 0.194505495935275 0.185233030346253 0.185233030346253 0.212155639291826 0.187653614913576 0.193403938921491 0.190963609401649 0.185233030346253 0.191862088505967 0.188031923707074 0.185233030346253 0.193557919066562 0.193829358513844 0.189714959986795 3 3|0 -|/ 21089598 21090476 21089941.6 21089340 21090810 - gene protein_coding_gene FALSE TRUE AT3G56950.1 SIP2;1 (SMALL AND BASIC INTRINSIC PROTEIN 2); transporter One of the Major Intrinsic Proteins(MIPs) which facilitate the passive transport of small molecules across membranes.Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER. Identical to Probable aquaporin SIP2.1 (Small basic intrinsic protein 2.1) (SIP2.1) [Arabidopsis Thaliana] (GB:Q9M1K3); similar to SIP1,2 (SMALL AND BASIC INTRINSIC PROTEIN1B) [Arabidopsis thaliana] (TAIR:AT5G18290.1); similar to Major intrinsic protein [Medicago truncatula] (GB:ABE79842.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.47250132780978 5.44449263115563 0.000210417547341336 1 6.13104652136388 13.8429095298676 0.47250132780978 0.0512506958654605
AT3G15050_at 1.38643984089371 0.999466716228731 1.99454519462130 1.55114844644029 1.66579016813655 1.49296014686571 1.13063836418117 1.11253960351635 1.10387725068885 1.11651836641666 1.90857623307485 1.50056487794592 1.50422496510581 1.47496532804856 1.78127071259568 2.02487591036524 3.13991301296812 1.58474783578848 1.55218069701304 0.198093425039557 0.197220418860318 0.202048021737804 0.19578315965953 0.199950405501552 0.212951435690039 0.198404282438888 0.203362426468504 0.201860834624976 0.199497507404806 0.198125882390824 0.201882635914731 0.206864498711968 0.201594768372884 0.19578315965953 0.19578315965953 0.202813018625131 0.203307347376868 0.202043459654648 3 3|0 -|/ 5066917 5067506 5067170.2 5066886 5067967 - gene protein_coding_gene FALSE TRUE AT3G15050.1 IQD10 (IQ-domain 10); calmodulin binding similar to IQD9 (IQ-domain 9), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G33990.1); similar to Os06g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056849.1); similar to IQ calmodulin-binding re (GB:ABE78154.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.56310338962902 5.4407918813783 0.000211590506162411 1 6.12646880121322 2.97789995887353 0.56310338962902 0.106192221475820
AT1G03550_at 5.12107173145009 4.83309202222488 5.92858730650707 5.47699414534429 6.66064620922795 5.88197211298851 3.85952974424770 3.59500346407423 4.55152971857913 5.3617386330065 4.61864914089576 4.50983523506023 5.24453971817606 5.26814276857107 3.87589470801366 5.86278836251144 5.48008530233598 4.76626114263171 5.57418753554156 0.227449109239807 0.230024940579038 0.226780279920136 0.224572145470347 0.230505000532730 0.232935827755730 0.227413838908955 0.236721765271839 0.229437048257592 0.229297784807670 0.224572145470347 0.230721152195599 0.226783717057146 0.243543581289606 0.23180924594166 0.224594029717389 0.245343071983283 0.227446956430768 0.230111079503433 1 1|0 -|/ 885854 887025 886363.875 885623 887956 - gene protein_coding_gene FALSE TRUE AT1G03550.1 secretory carrier membrane protein (SCAMP) family protein similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT2G20840.1); similar to similarity to SCAMP37 [Pisum sativum] (GB:AAC82326.1); similar to Os01g0780500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044437.1); similar to Os07g0564600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060004.1); contains InterPro domain SCAMP; (InterPro:IPR007273) 0.71283247729158 5.4400714543356 0.000211819653750383 1 6.12557736714171 10.2274920134999 0.71283247729158 0.169838512972756
AT1G76460_at 5.1774278065323 5.87456137200832 5.91310150587048 5.98517870876113 7.18385833221039 7.68223258357235 5.44183239711251 6.21676083121302 5.91658985387247 6.16341729500165 6.75735766054993 6.63327327341701 7.18175194010459 6.95740762027223 5.91165854191503 6.96752474407442 6.52851356756696 7.0759058155636 6.45087041204611 0.203781538134330 0.194983698581462 0.194386033913621 0.202232813221989 0.201218602694423 0.199684566636496 0.207857941544227 0.196868442696861 0.197851044147133 0.204745490492213 0.201093035511930 0.194386033913621 0.201105428952716 0.205803337597083 0.202417264500589 0.197726445028792 0.206849704065329 0.201470895517996 0.195396971848463 1 1|0 -|/ 28691942 28692662 28692286.3 28691075 28694015 - gene protein_coding_gene FALSE TRUE AT1G76460.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G20880.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.794081069673308 5.43850133012919 0.000212319980433009 1 6.12363422041189 12.6486858583632 0.794081069673308 0.200331333568675
AT1G12020_at 4.53476849419243 4.83966797787491 3.91648354443843 3.80175474435192 4.12595616797774 4.47405062305672 4.22087827816219 4.90703764855477 4.15761870245646 4.08702969055471 3.01738754965547 3.51366810010928 3.31937142143559 3.47734165842074 3.77738475684823 3.77843744744081 3.00053403254208 2.35017683204119 3.84969019583116 0.220161258860456 0.209349521440589 0.208099084439593 0.205230269729243 0.213311479630068 0.221683298585024 0.218178638367819 0.217149537330601 0.214049376631882 0.207603745770659 0.212977435485949 0.205169859264423 0.211674872196951 0.213309765716001 0.21905326275212 0.205049723248527 0.226342315462153 0.219860180683337 0.206543981451250 1 1 - 4062707 4063198 4062979 4062460 4063335 - gene protein_coding_gene FALSE TRUE AT1G12020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62422.1); similar to OSJNBa0043A12.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE02815.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23186.1) -0.649092650604488 -5.43717880949451 0.00021274238173559 1 6.12199715733032 8.00794164537236 -0.649092650604488 0.144592409136353
AT1G33410_at 6.02826825780808 6.81896101717843 5.50550408661382 5.87325402165742 6.17416525340796 6.03743298117552 6.59351073176436 6.97499405349885 6.31554147333405 6.10880920471565 5.13362314912635 5.41865736988396 5.78898238973538 5.65596338363549 5.60157992258859 6.14290184606418 5.90181619754550 5.53950091601103 6.62154332266493 0.242196596065165 0.23532753433099 0.242290296221002 0.240677462434371 0.239384728457466 0.244834058327004 0.240525907724232 0.231829795725017 0.244267369842052 0.243430358087136 0.241127990352922 0.230873169734128 0.231813843135198 0.235170807506117 0.235412898937360 0.235872775798421 0.245263581472991 0.234549402919543 0.237209611915993 1 0|1 /|- 12109755 12111637 12110746.4 12109600 12118808 - gene protein_coding_gene FALSE TRUE AT1G33410.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13231.1); similar to Os02g0142500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045864.1) -0.703548808048241 -5.43677500271905 0.000212871531930750 1 6.12149724818554 12.2490160405857 -0.703548808048241 0.166408080975701
AT4G33980_at 5.35912865161235 5.5073758736716 3.27777185252519 3.21651817575718 5.9460083543298 5.29689355458651 1.03801714343691 0.899239946929322 1.11518889084132 1.10873917141692 1.22440448520256 1.48039403510955 1.00484836351053 1.18169350871229 1.12871962554827 0.859421087852511 1.32953998653112 1.29796690204918 1.51302888780177 0.346061210859275 0.338733467478888 0.320408862118794 0.319367822790888 0.340513758546429 0.36080770632002 0.312902330534938 0.316680806020318 0.325798709257125 0.311572771816941 0.310976561933858 0.312571627075174 0.310976561933858 0.310976561933858 0.32144955226055 0.310976561933858 0.310976561933858 0.311851653999348 0.313914460620195 4 4|0 -|/ 16283694 16284868 16284133.5 16282801 16285063 - gene protein_coding_gene FALSE TRUE AT4G33980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42900.2) 0.588039381507479 5.43640935331503 0.000212988550079130 1 6.12104455219388 5.03463210210669 0.588039381507479 0.118177252891145
AT2G19540_at 8.44592172539772 8.30051400271047 8.21431890015189 8.09235523950901 8.09523998159682 7.79669340123933 8.60161392228343 8.51590559293421 7.08489454475196 7.3758444679343 6.47279178444951 6.69585671281835 6.74226505015306 6.8530900315396 6.99541521767931 7.1396525353386 7.08980018182588 6.74867443939227 7.73729814588377 0.191290144353278 0.188224892385017 0.187439483177348 0.189135766175104 0.18711989705743 0.19280231496095 0.186775360138178 0.188053965791854 0.207599703721250 0.193883852463988 0.197724250848682 0.186775360138178 0.192949122232770 0.195938506858514 0.192189003535699 0.186775360138178 0.187785346921364 0.193297326607573 0.191775191123511 2 2|0 +|/ 8470534 8471389 8470910.9 8468839 8471616 + gene protein_coding_gene FALSE TRUE AT2G19540.1 transducin family protein / WD-40 repeat family protein similar to MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) [Arabidopsis thaliana] (TAIR:AT2G16780.1); similar to WD-40 repeat protein-like protein [Solanum tuberosum] (GB:ABB72800.1); similar to Os11g0134500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065677.1); similar to immature pollen 1 [Oryza sativa (japonica cultivar-group)] (GB:ABF38930.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.486744702790481 -5.43357485142598 0.000213897993243369 1 6.11753445146988 15.3785898275643 -0.486744702790481 0.0629915455020935
AT3G11080_at 2.63053366099727 2.69969480978123 4.26536259479838 3.82064777802193 2.5808870711802 2.4747280713569 1.67252429275019 1.74793143026752 2.21863667926399 1.80819058379113 2.07758671832893 1.96645177028165 2.14703775590504 2.01467711880176 1.86550578074228 1.85574184513137 2.08155335839356 1.98665602312201 2.17498725766147 0.245168827854944 0.249602199298998 0.252535772106358 0.25656447595295 0.232780273741406 0.239747979185777 0.232780273741406 0.239969470998106 0.232780273741406 0.233586934676298 0.232780273741406 0.23808587276476 0.232780273741406 0.238056710205948 0.232780273741406 0.232780273741406 0.235779139819153 0.234090657717134 0.235148699043469 3 3 + 3472727 3473285 3473085.455 3470446 3473318 + gene protein_coding_gene FALSE TRUE AT3G11080.1 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G15080.2); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G11010.1); similar to Cf-2.2 [Lycopersicon pimpinellifolium] (GB:AAC15780.1); similar to Cf-2.3 [Lycopersicon pimpinellifolium] (GB:AAX19021.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.514932559911548 5.43308610454535 0.000214055223226425 1 6.11692906635254 4.76987511526613 0.514932559911548 0.0810794809624702
AT3G21690_at 9.30468154548519 9.52399248031463 10.1760606081801 10.1684208791134 10.7076046366535 10.0978497888896 9.72597473636257 9.66779935504665 8.32890593753465 8.781846720069 8.2894947580324 8.53970324743847 9.56262882933456 9.12120926781284 7.91681365905618 9.8489868947681 9.75044913444287 8.8265765191256 8.57706820882903 0.138240325330476 0.133944069354631 0.138000261350083 0.137079411635940 0.133785421766695 0.137726651481363 0.135568107757809 0.135384702856417 0.162301097371248 0.137201963222358 0.140557740681155 0.133275959032783 0.138715956820375 0.14362276086948 0.146978815273942 0.133275959032783 0.140397501915221 0.140094630179998 0.140951919448837 3 3|0 +|/ 7639804 7641632 7641114.4 7638670 7642212 + gene protein_coding_gene FALSE TRUE AT3G21690.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G11670.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G61890.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97209.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97220.1); similar to putative MATE efflux family protein [Oryza sativa (japonica cultivar-group)] (GB:AAS01962.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.575623891090362 5.43266085085046 0.000214192127367561 1 6.11640229191981 18.6938428758702 0.575623891090362 0.112597429003940
AT2G14170_at 8.7854920341215 9.03447122058158 9.01916900770219 9.11583102038006 10.0605730997158 9.46290065431831 8.72505857368515 8.41609183524303 8.43485549623861 8.4791463388015 9.13065332350816 9.00573047690883 9.0059626074001 8.98818346978236 8.75105970547105 8.89623356874256 9.02608870705174 8.78744066414874 8.33628562685268 0.130297344050142 0.130711724844802 0.127549886138589 0.138219308999161 0.138330028351155 0.129768314980166 0.130457678824387 0.134131004695859 0.143889163064530 0.131471694947773 0.13341416007664 0.126283631902429 0.128484931313955 0.129639293498214 0.125874462807165 0.126983886660008 0.140823321078033 0.131047501405073 0.129928611321256 2 2 - 5984814 5986125 5985385.455 5984438 5988981 - gene protein_coding_gene FALSE TRUE AT2G14170.1|AT2G14170.2|AT2G14170.3 ALDH6B2 (Aldehyde dehydrogenase 6B2); 3-chloroallyl aldehyde dehydrogenase|ALDH6B2 (Aldehyde dehydrogenase 6B2) Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase Identical to Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (MM-ALDH) (Aldehyde dehydrogenase 6B2) (ALDH6B2) [Arabidopsis Thaliana] (GB:Q0WM29;GB:Q9SI43); similar to ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G24503.1); similar to ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE), 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79440.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_783603.2); similar to methylmalonate semi-aldehyde dehydrogenase [Oryza sativa] (GB:AAC03055.1); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABD28558.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086); contains InterPro domain Methylmalonate-semialdehyde dehydrogenase; (InterPro:IPR010061)|Identical to Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (MM-ALDH) (Aldehyde dehydrogenase 6B2) (ALDH6B2) [Arabidopsis Thaliana] (GB:Q0WM29;GB:Q9SI43); similar to ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G24503.1); similar to methylmalonate semi-aldehyde dehydrogenase [Oryza sativa] (GB:AAC03055.1); similar to Os07g0188800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059082.1); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABD28558.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086); contains InterPro domain Methylmalonate-semialdehyde dehydrogenase; (InterPro:IPR010061) 0.603248303850191 5.43159490577298 0.000214535701753770 1 6.11508173085818 17.7602892070556 0.603248303850191 0.125271374595372
AT3G27690_at 12.8486594165095 13.0286445865182 11.710679267838 11.7094940231943 12.2884856662553 12.3188027626033 13.5064561589649 13.5846998087991 13.9848559334236 13.9165405895950 14.4933534343701 14.5414198189970 14.1050389018278 14.2431816193728 14.3374941520839 14.2206418823356 13.7578840549128 14.1566993652449 13.8141936519551 0.0785469081194966 0.0766160047365046 0.0836386206905405 0.0805964074325564 0.0790721605971692 0.0809334742663979 0.0782210394613913 0.0783565191121528 0.077546928219586 0.0766160047365046 0.077265046425607 0.0766160047365046 0.0786524010365885 0.0797561369291974 0.0786684990225826 0.0766160047365046 0.078246963485009 0.0766160047365046 0.0766160047365046 3 3 + 10257609 10258110 10257895.636 10257184 10258248 + gene protein_coding_gene FALSE TRUE AT3G27690.1 LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05100.1); similar to light harvesting chlorophyll A/B binding protein [Prunus persica] (GB:AAC34983.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.45424106703664 -5.42911653915426 0.000215336792435080 1 6.1120105806274 26.6930706506525 -0.45424106703664 0.034366609011109
AT2G05160_at 2.30009784253543 2.26960191919576 2.04247170324494 1.35566527062255 1.74707557342713 2.21156213479614 2.11095529273427 2.16805126682674 3.25125156393668 3.97035419991864 2.68956093442047 3.08586749642707 2.46745401420364 2.30381470170664 3.13049546109455 2.51507411941054 2.44363432079235 2.95458418941041 3.63333720539323 0.197679287678917 0.194690593213846 0.202932770926795 0.199052861650042 0.193402898343602 0.207808202133694 0.196267388907192 0.202458384075581 0.211170381975146 0.206404292883034 0.193465402762143 0.192474175183801 0.200031184920766 0.192707840147974 0.212977266086575 0.195166581188744 0.192768470549149 0.203451684106291 0.208331552543020 2 2|0 -|/ 1859045 1859755 1859448.2 1858543 1860928 - gene protein_coding_gene FALSE TRUE AT2G05160.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G52980.1); similar to Os08g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060899.1); similar to RRM-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC55605.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.6462432891 -5.42688957541915 0.000216059333157445 1 6.10925002116433 5.1842476143059 -0.6462432891 0.143920814469194
AT3G03610_at 5.63402035189506 5.89353803132595 5.7225096191897 6.47427198973888 5.70672649756444 5.60570125551122 4.52426779410495 4.38784147121783 4.82918107171867 3.71742234776636 4.59625719627006 4.74029577658684 4.60951422223275 5.05905786885826 4.3738184139853 5.08062462686573 4.89696141751275 4.64556129621034 4.17480034175739 0.243708388912176 0.251632485425145 0.248787938495211 0.254048235728114 0.246417071318074 0.248079252934931 0.243425306179795 0.249425765802366 0.251617636397591 0.245419807087963 0.240091184645985 0.239506522722658 0.238888719727663 0.249888377691013 0.254718490033305 0.240317839246916 0.247497982425956 0.246475748737069 0.248404835153723 3 3|0 +|/ 870735 871656 871237.889 868798 871819 + gene protein_coding_gene FALSE TRUE AT3G03610.1 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT1G03620.1); similar to Engulfment and cell motility, ELM [Medicago truncatula] (GB:ABE91547.1); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) 0.638589430133114 5.42688195660125 0.000216061809508563 1 6.1092405752927 9.9889742626832 0.638589430133114 0.140730190115532
AT4G36110_at 5.80576421794575 5.80255285896536 5.86770259552244 6.36239999015004 3.20342017100679 3.30422843659322 1.35027666265148 1.78307273063421 2.42612715070763 1.73906499827680 2.40007015750515 1.95782718196608 2.15126619805668 3.18512553328022 0.926693685591425 1.80959493440642 2.39565592410332 2.40048517960037 1.81056727271508 0.253911230040988 0.259649587616704 0.257530092749987 0.261209019395106 0.237436063965037 0.252158971223851 0.251200421044138 0.253823274066153 0.237488676809525 0.239791356237547 0.240728863519437 0.238170261713524 0.244279521707372 0.237436063965037 0.25176994330232 0.240920093833788 0.246391171690092 0.239064452807558 0.245014637858515 4 4 + 17090053 17090305 17090178 17089952 17090828 + gene protein_coding_gene FALSE TRUE AT4G36110.1 auxin-responsive protein, putative similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G18010.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12780.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.580220611424729 5.42607255524408 0.000216325061835492 1 6.10823701344473 6.2575570362071 0.580220611424729 0.115079473574034
AT3G14760_at 2.93451975506132 3.20638924420165 2.25788975680863 2.38869420172896 2.59540340232651 2.21330126048156 3.55690353861983 3.28726271352354 4.2167025245542 3.67210222023698 3.69314664026453 5.25962031846805 3.0288555737799 3.55796486385078 4.84387887302289 3.54211239586434 2.64012563501642 3.73269663054228 4.07694327727966 0.190181720686025 0.189258744722005 0.189338838248653 0.188549236998136 0.191562013385401 0.197991685859210 0.189887562370657 0.187573088358014 0.188375068135691 0.186805159255960 0.189631230971053 0.197052607573616 0.189681943135293 0.188970670143104 0.188353230741457 0.186862798701448 0.192595396928518 0.189470085253423 0.191797589631220 3 3 + 4956730 4957027 4956824 4956356 4957262 + gene protein_coding_gene FALSE TRUE AT3G14760.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28960.1) -0.541864607593816 -5.42517046036516 0.000216618863799446 1 6.10711838358695 6.69298687928138 -0.541864607593816 0.0963109519927596
AT3G01640_at 4.42887136296667 4.08090607324287 4.33490998915533 4.34476345546478 4.2363258023809 4.50917131962886 3.91651735415428 3.97150277669125 3.88828980600558 3.32890722018598 4.42051786270144 4.46037530330448 4.09128126184294 4.5044248151388 4.43531675388734 4.10244616490560 4.11212513384331 4.22335920242277 3.38982254787018 0.224860883934610 0.220460515468062 0.224134257509884 0.21883172504709 0.217146392398607 0.221440390409815 0.218181911360123 0.222153919730545 0.232735086506716 0.224997304966319 0.223631779009438 0.219617528415434 0.226837647380910 0.217883887809180 0.217146392398607 0.221317512184342 0.217679719814841 0.218287649814783 0.218751187380197 3 3 + 240265 241150 240717.545 239388 241450 + gene protein_coding_gene FALSE TRUE AT3G01640.1 GHMP kinase family protein similar to GHMP kinase-related [Arabidopsis thaliana] (TAIR:AT5G14470.1); similar to Os11g0217300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067512.1); similar to GHMP kinases putative ATP-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92069.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.507450435397812 5.42394287560465 0.000217019355406362 1 6.10559589924987 8.14257301851549 0.507450435397812 0.0771297874018051
AT3G26580_at 11.5313530828762 11.6598264580911 12.0431542126622 11.9641308981146 12.2826149838142 12.1359079459040 11.721081787781 11.4961751522401 11.0434792057820 11.3152458396175 11.7883448398168 11.3958949274763 11.7142161509832 11.5019697396920 11.2891869867352 11.7113962000941 11.8255668885364 11.4479140735585 11.0687403865918 0.0829847432358601 0.0829847432358601 0.0843334972044416 0.0835189859845898 0.0829847432358601 0.0829847432358601 0.0844380789948891 0.0854876448371665 0.094620037472115 0.0881012831692333 0.0833390727342992 0.0829847432358601 0.0833141126374355 0.085530082335385 0.0873168759759966 0.0829847432358601 0.0877851302174055 0.0892561246044282 0.0892193614426322 3 3 + 9760956 9761556 9761258.818 9760124 9761781 + gene protein_coding_gene FALSE TRUE AT3G26580.1 binding similar to hypothetical protein [Spinacia oleracea] (GB:CAA74590.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.473082819203874 5.42293119375219 0.000217350001508150 1 6.10434097964009 23.2176804167814 0.473082819203874 0.0532986007608046
AT1G07630_at 7.7798057937045 8.10296505990681 8.08669328353638 8.08502017108105 8.20144018838666 7.8148296863879 6.22568180462577 6.67585996566322 6.1795239997745 5.74504694968343 6.4213759574757 6.54754226686507 5.66778995981657 6.77758114346968 6.13428395491935 6.20275800470970 5.74071163717489 6.30012901728423 5.7975207029622 0.246773561003668 0.244299942412494 0.244303621961413 0.246271354547848 0.251865970038636 0.259925114284455 0.248619129554554 0.240037685871613 0.259907230507487 0.244033792703108 0.240232373533772 0.240722567623044 0.240037685871613 0.247980750302371 0.251936574318198 0.244804015549471 0.269087083295477 0.241846614467847 0.240037685871613 1 1 + 2350608 2351172 2350917.636 2349094 2351689 + gene protein_coding_gene FALSE TRUE AT1G07630.1 PLL5 (POL-like 5); protein phosphatase type 2C Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves. similar to PLL4 (POLTERGEIST LIKE 4), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT2G28890.1); similar to Protein phosphatase 2C, putative [Medicago truncatula] (GB:ABE91024.1); similar to Os03g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049705.1); similar to Os03g0821300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051726.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.583787642473639 5.42209682739451 0.000217623098725072 1 6.10330586863365 13.6872296825888 0.583787642473639 0.116932047430310
AT1G48520_at 7.37953826604977 7.51399763385739 6.93432848280259 6.79013080561618 7.11141198396568 7.28638629241275 7.79464622745265 7.65628622060146 8.01361904449922 8.17384379876515 7.68870314216796 8.09717941496272 7.46538462836001 7.31797448670366 8.05745248898549 7.71893200750887 7.545605822605 7.77836549029674 8.09693598988547 0.184610065034330 0.183226265940038 0.195956892411153 0.187574868766061 0.193788385763052 0.186259972803555 0.186313335549475 0.181391155284034 0.198037681324584 0.187071149373515 0.181452653435250 0.181323176364242 0.192964774598642 0.187729950048942 0.190559768612304 0.180933177835593 0.184761438223051 0.191776441105367 0.180771647316210 1 1|0 +|/ 17945214 17946175 17945625.8 17943756 17946490 + gene protein_coding_gene FALSE TRUE AT1G48520.1|AT1G48520.2|AT1G48520.3 GATB (GLU-ADT SUBUNIT B); glutamyl-tRNA(Gln) amidotransferase Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). similar to Os11g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068056.1); similar to Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94201.1); contains InterPro domain GatB, central region; (InterPro:IPR006107); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase B subunit; (InterPro:IPR004413); contains InterPro domain GatB/Yqey; (InterPro:IPR003789); contains InterPro domain GatB N-terminal region; (InterPro:IPR006075)|similar to Os11g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068056.1); similar to Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94201.1); contains InterPro domain GatB, central region; (InterPro:IPR006107); contains InterPro domain Phospholipase C/P1 nuclease; (InterPro:IPR008947); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase B subunit; (InterPro:IPR004413); contains InterPro domain GatB/Yqey; (InterPro:IPR003789); contains InterPro domain GatB N-terminal region; (InterPro:IPR006075) -0.47082631082108 -5.42152772210882 0.000217809582260333 1 6.10259976735133 15.2100903872192 -0.47082631082108 0.0515202631508263
AT3G55910_at 2.14079755480498 2.09456582556742 3.67706216156282 3.65087360943803 2.78646282838780 2.95394677307554 2.21506085299721 1.96184497131504 1.81923842451660 2.35193244569376 1.83595044254092 1.29710064526874 1.38296103964032 1.53447740056364 1.64525605454814 1.78720119324114 2.02636456692523 2.1199411231848 1.59469918484482 0.199290036108166 0.198170527803099 0.221385680514757 0.211667769818252 0.210772312099923 0.205537721017463 0.201232314502712 0.200320863832918 0.201429391049175 0.197748890307413 0.195711984635315 0.198808848585963 0.207320641140904 0.20723326302515 0.197278917512519 0.197156897126497 0.208897071625454 0.199879861930568 0.198735237170011 3 3|0 +|/ 20753892 20754207 20754075.444 20753878 20754458 + gene protein_coding_gene FALSE TRUE AT3G55910.1 unknown protein 0.472859457582801 5.4198364176515 0.000218364789162119 1 6.10050098493517 4.49788344377236 0.472859457582801 0.0533368869199042
AT4G02730_at 4.2708205579223 4.44698797595521 4.40547510349964 4.60580513872435 4.19607796381234 3.96876116496036 3.92453368368689 3.80478679733002 2.69045083908802 2.98059856618460 3.27179831349045 3.5378034324909 3.16723584934113 3.98555499836006 3.33415154142166 3.35412571747105 3.70317272858803 3.60030780608463 2.43814740982356 0.233653519927399 0.222872620291427 0.230442780365124 0.218425991755493 0.223308431709736 0.231611467621161 0.218425991755493 0.220995992972863 0.218425991755493 0.222942257523239 0.224727759393093 0.223240234633694 0.230408051911993 0.220165900207832 0.226773699936132 0.218425991755493 0.230560586075158 0.224983104415659 0.233114518976046 4 4|0 +|/ 1208162 1208972 1208525 1207725 1209287 + gene protein_coding_gene FALSE TRUE AT4G02730.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os07g0572000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060055.1); similar to PREDICTED: similar to WD repeat domain 5 isoform 1 [Danio rerio] (GB:XP_688584.1); similar to Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 (GB:2G9A); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632) 0.486725391199747 5.41598268918081 0.000219635483010106 1 6.09571687162539 7.30157324995541 0.486725391199747 0.0640955148516342
AT1G34180_at 3.60320257052729 4.39799582280506 4.37408493226983 4.37306360071017 4.48201748752047 4.73175375660677 2.07459894835676 1.89320233133559 2.52801777651334 1.99419126053022 1.76523548383571 1.90217812928774 2.53386368916189 1.99447964797585 2.00005842977768 2.00572641612625 2.21111644141899 2.07370776587854 2.23324155176268 0.22944135579293 0.229866948572202 0.228890114742748 0.233242302715888 0.232072026448679 0.239730919308709 0.225240854606526 0.225240854606526 0.226183968787952 0.225240854606526 0.229805412512905 0.229104210863689 0.225240854606526 0.230462077141048 0.231331353809341 0.228020227248516 0.225240854606526 0.225240854606526 0.227701774053040 1 1 + 12450353 12451072 12450654.818 12448545 12451265 + gene protein_coding_gene FALSE TRUE AT1G34180.1|AT1G34180.2 ANAC016 (Arabidopsis NAC domain containing protein 16); transcription factor|ANAC016 (Arabidopsis NAC domain containing protein 16) similar to ANAC017 (Arabidopsis NAC domain containing protein 17), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34190.1); similar to nam-like protein 7 [Petunia x hybrida] (GB:AAM34770.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.653479456759027 5.41391084736238 0.000220321879020650 1 6.09314373063622 5.89754623795061 0.653479456759027 0.147550824383723
AT3G53230_at 4.02151060726655 4.2346086850361 5.52650941558363 5.81365600383064 3.61586074947809 3.89691452517543 4.03450247881423 4.02179390830918 2.29414564111042 3.44491243919094 2.78029866327064 2.86622077289646 3.59181588158589 3.35795877248142 3.16861423781021 3.50783205210186 4.66740776232138 3.40119775687643 3.36486557530516 0.242033970666420 0.240129776446692 0.250690852712927 0.258236861680914 0.246991444353497 0.245657484990731 0.239903346574305 0.24311901226202 0.248379952190849 0.238896718822193 0.239704272510395 0.244822673782916 0.24616631313086 0.238896718822193 0.246594757921193 0.238896718822193 0.240594600860533 0.244404896890489 0.248937511071792 3 3 + 19736909 19737389 19737166.545 19734329 19737650 + gene protein_coding_gene FALSE TRUE AT3G53230.1 cell division cycle protein 48, putative / CDC48, putative Identical to Putative cell division control protein 48 homolog D (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) (CDC48D) [Arabidopsis Thaliana] (GB:Q9SCN8); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to putative spindle disassembly related protein CDC48 [Nicotiana tabacum] (GB:ABF59516.1); similar to Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) (GB:P54774); similar to Cell division cycle protein 48 homolog (GB:Q96372); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase, CDC48; (InterPro:IPR005938); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase VAT, N-terminal; (InterPro:IPR003338); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.509079136271482 5.41292830858609 0.000220648188091814 1 6.09192318825037 7.6218242746635 0.509079136271482 0.0787382910379796
AT3G09500_at 10.6362666551478 10.7214537017777 9.92952397598715 9.988233326007 10.4341109674483 10.0601943586419 10.6135750090347 10.8327623256031 10.6043516882767 10.8922670985620 10.5502065502262 10.766220325203 10.2634792816792 10.2844374221920 10.9735818223794 10.1232561143572 9.96378923045785 10.0678904507140 10.8695031107007 0.105780138779985 0.105334488752369 0.119118213072119 0.118963686996994 0.103373806167117 0.113979227650638 0.115069389420277 0.107655108465429 0.118443712560172 0.102434818624066 0.103144721288059 0.102434818624066 0.104622755148898 0.105534048575640 0.105735980239608 0.102434818624066 0.123996777803381 0.111906931349913 0.103250013607991 3 3|0 +|/ 2917187 2917680 2917485 2916958 2918114 + gene protein_coding_gene FALSE TRUE AT3G09500.1 60S ribosomal protein L35 (RPL35A) Identical to 60S ribosomal protein L35-1 (RPL35A) [Arabidopsis Thaliana] (GB:Q9SF53); similar to 60S ribosomal protein L35 (RPL35D) [Arabidopsis thaliana] (TAIR:AT5G02610.1); similar to 60S ribosomal protein L35 (GB:Q9M5L0); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.506299207699194 -5.41192604119143 0.000220981578332934 1 6.09067795915978 20.9834225143714 -0.506299207699194 0.0771133467013118
AT3G48880_at 7.57775052744263 7.08351621601239 7.40736028488268 7.46129442021177 8.14869361856839 8.17877352228287 6.86340146308765 7.01484360536267 6.58145479532346 6.40270735884344 6.78175924181318 6.63095548649688 6.92153750527798 7.11838640712111 7.14695905123043 7.0019474368767 7.36395278552916 7.01585127855127 6.83179207431286 0.191089329890137 0.188507051218546 0.195639204756918 0.186015175014029 0.186369328911292 0.198628235198077 0.185192756010169 0.190123539734426 0.194766206235663 0.191467270794794 0.188786535058001 0.187369183200102 0.186440079230969 0.185158911149998 0.194420432667675 0.183016277694210 0.187125228811436 0.181969053599439 0.191357731655568 3 3 + 18139194 18139784 18139583.636 18137855 18140174 + gene protein_coding_gene FALSE TRUE AT3G48880.1|AT3G48880.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G11580.1); similar to Os10g0502900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064994.1); similar to putative Rhizobium-induced nodule development associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13618.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.528251540731131 5.40561270281118 0.000223093964561511 1 6.08283003176811 14.2684475698674 0.528251540731131 0.090090863262355
AT4G39900_at 4.85010233222896 4.62575718985284 2.8009267033625 2.56649306631757 3.43395558330399 4.0922193187518 4.49597798818145 4.37642433771423 4.37228982682623 4.68953697375558 5.34038786774372 6.44576547083184 3.81415142319033 3.99354228191766 6.56975494767867 4.42716250360863 3.84221108613752 4.16754005689705 4.97051508424974 0.257275936038411 0.267210961543915 0.261828107929493 0.261371880857918 0.263530262388373 0.271731802978110 0.257510896884262 0.259249061549928 0.292341895057861 0.263840198732918 0.257275936038411 0.257275936038411 0.265168930582143 0.268528395324755 0.264837098124133 0.257275936038411 0.267639981842198 0.266226440060474 0.259709381661095 4 0|4 /|- 18508771 18509361 18509159 18508364 18510547 - gene protein_coding_gene FALSE TRUE AT4G39900.1 unknown protein -0.60802481712679 -5.40536463627592 0.00022317740221284 1 6.08252152087034 8.65648793981143 -0.60802481712679 0.128677994418476
AT4G00335_at 6.00970647156695 6.49685747858178 6.19076202290938 6.39827173216666 7.17723036992685 6.8733382578808 5.64422726068165 5.67583410648658 4.50870990971148 4.10964201158048 4.6999238147087 4.04523907203315 5.4322541635322 4.78737245247799 4.91503225684147 5.13667519421097 5.33961068207202 4.446167970449 4.69066486094867 0.24130695778224 0.243938679956139 0.243919563540821 0.242878342426267 0.244302399363384 0.253262967476727 0.239176346057964 0.2500909641674 0.248323687176228 0.247414863547172 0.239176346057964 0.244235201519208 0.247228935139001 0.240670634766243 0.242037607496608 0.239176346057964 0.244736700793922 0.248216624172182 0.239427366850212 4 4 + 146870 147688 147292.818 145904 148339 + gene protein_coding_gene FALSE TRUE AT4G00335.1|AT4G00335.2|AT4G00335.3 RHB1A (RING-H2 finger B1A); protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41350.1); similar to Os10g0142100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064147.1); similar to Os11g0294600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067717.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65911.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.558594894884413 5.40507107498668 0.000223276184947291 1 6.08215641555924 10.9515901516272 0.558594894884413 0.105793708986586
AT4G02540_at 6.16123362346796 6.12642459541189 6.26887536081943 6.1264524364171 6.79879631090018 6.19342281182743 5.608680317781 5.14719861638507 5.55275965528598 5.7626201021797 7.42878672629619 7.2499215361794 7.13948636174688 6.32593097233462 6.24509977936014 6.80752634401226 6.04582556392535 6.51978477365895 6.88129083159642 0.248816682902471 0.239408977503652 0.246490875975423 0.248940372704479 0.247802359105376 0.250692044001396 0.256409811460865 0.241712349026639 0.245237933546687 0.239610330484528 0.245646233310104 0.239194705801335 0.242103705158182 0.261525536025178 0.244685423147240 0.243173888918823 0.249104264774780 0.253711436888103 0.239918537807925 4 4 + 1119131 1119626 1119433.273 1117154 1119817 + gene protein_coding_gene FALSE TRUE AT4G02540.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62030.1); similar to MEE53 (maternal effect embryo arrest 53), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G10560.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.620370417949037 5.40333730201828 0.000223860543936885 1 6.07999978700345 12.4468115692312 0.620370417949037 0.134152349526170
AT1G15350_at 6.51071676596325 6.389893129943 6.30538521836271 6.02325556617423 7.20450885504193 7.18800725978099 5.91750170258294 5.57148413395186 6.16888376313108 5.39675948021867 6.20061016257475 6.05113158245991 6.48162231556377 6.15906800286302 5.74499854525865 5.91950309981946 6.88700306218154 6.20552716790057 5.73900939992492 0.247913531152918 0.243043452070706 0.238852024994508 0.247875018446572 0.241576522417347 0.243805144665361 0.240432116011248 0.242124150330304 0.245557639546520 0.246890795344765 0.239703797774959 0.23775817382744 0.243194639233784 0.251458709751552 0.242589226749546 0.242847780255649 0.244729090309551 0.256280436664506 0.245143722473214 1 1|0 -|/ 5278776 5279159 5279030.444 5278257 5279872 - gene protein_coding_gene FALSE TRUE AT1G15350.1|AT1G15350.2|AT1G15350.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25360.1); similar to hypothetical protein [Glycine max] (GB:AAN03467.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15770.2); similar to hypothetical protein [Glycine max] (GB:AAN03467.1) 0.510427868149593 5.40318226776792 0.000223912876497679 1 6.07980691456436 12.3760443490181 0.510427868149593 0.0800919629189313
AT3G18830_at 9.86620986919349 10.2517528425848 10.8355466204213 10.9896205059835 9.95284138735598 9.9416501331826 7.98870249428174 8.88781792684462 9.8491066726677 8.98511133007303 9.55305751510389 9.98691478104205 9.37933695050362 10.1725332029041 9.46127794397554 10.0387941782536 9.18966191799008 9.31122462976095 9.34823848706138 0.107724776426894 0.108338939797572 0.11173966472679 0.109884371899802 0.107724776426894 0.112069028808775 0.115368367362780 0.108535498695957 0.111544869330443 0.119000049935679 0.109223247674157 0.107753527595478 0.108678977814721 0.107724776426894 0.111577123152401 0.107724776426894 0.116400434418604 0.114577532090622 0.109510823843018 3 3 - 6489059 6489572 6489344.636 6488868 6491279 - gene protein_coding_gene FALSE TRUE AT3G18830.1 ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transporter/ D-xylose transporter/ carbohydrate transporter/ galactose transporter/ glucose transporter/ glycerol transporter/ hydrogen:sugar symporter/ mannitol transporter/ monosaccharide transporter/ myo-inositol This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The AtPLT5 symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone), of cyclic polyols (myo-inositol), and of numerous monosaccharides, including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily. Identical to Polyol transporter 5 (Sugar-proton symporter PLT5) (Protein POLYOL TRANSPOTER5) (AtPLT5) (PLT5) [Arabidopsis Thaliana] (GB:Q8VZ80;GB:Q9LS92); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT2G16130.1); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT2G16120.1); similar to putative polyol transporter protein 4 [Lotus japonicus] (GB:CAJ29291.1); similar to putative sugar transporter; member of major facilitative superfamily; integral membrane protein [Beta vulgaris] (GB:AAB68029.1); similar to putative sorbitol transporter [Prunus cerasus] (GB:AAM44082.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.711870927592009 5.40209690231665 0.000224279611071412 1 6.07845652984845 19.3546438740855 0.711870927592009 0.171395417619909
AT1G66840_at 4.78777506735419 4.96075007565701 5.03931776988556 5.3313427836419 5.79174656480365 5.52939184774587 7.41297672456898 6.79688484875156 6.27850290792833 6.89008330171302 5.45890535551529 5.88547282221357 6.44137481548914 6.06420614185352 5.21979909334152 6.43795377187786 6.65219531115807 5.41463936681355 6.63264552715652 0.208352416168391 0.205291007645192 0.20891483763559 0.198344872456348 0.201071045612552 0.203297323462500 0.217696254256547 0.211392271061730 0.211128165043193 0.203950519673959 0.207057625495539 0.2142646491799 0.201371416463206 0.201134898017195 0.204580208869242 0.205620656260331 0.201485076661602 0.201237138883838 0.204016697298693 1 1 - 24937750 24938212 24937921.455 24937661 24939779 - gene protein_coding_gene FALSE TRUE AT1G66840.1 similar to PMI15 (plastid movement impaired 15) [Arabidopsis thaliana] (TAIR:AT5G38150.1); similar to Os01g0692300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043941.1); similar to myosin heavy chain-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82493.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) -0.61011959085675 -5.39890441100175 0.000225362027187511 1 6.07448328134652 11.9798876671588 -0.61011959085675 0.129917630459585
AT1G18400_at 1.37002862527712 1.41952154621122 1.13735857633075 0.815941109258384 1.43467129291334 1.05722277569488 1.18737679935424 1.23535892778924 2.61424496039677 2.01702466698072 5.15479798334536 3.7866674752621 2.58420985159470 3.59561306099959 4.96108479670694 2.25875651384605 2.91466211000443 3.22161688774168 2.34533627853589 0.276448292558047 0.277346362368681 0.284292457342945 0.283826068126445 0.277692135347319 0.28441384493511 0.275491797189733 0.289519110011832 0.282817774063782 0.280745798977779 0.295917470599718 0.282383495004693 0.275367736431489 0.287756686308002 0.299146377436919 0.275328398168096 0.278148647186433 0.275328398168096 0.277242164152508 1 1|0 +|/ 6331619 6333534 6332295.556 6331391 6333736 + gene protein_coding_gene FALSE TRUE AT1G18400.1 BEE1 (BR ENHANCED EXPRESSION 1); transcription factor similar to BEE3 (BR ENHANCED EXPRESSION 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G73830.1); similar to putative bZIPtranscription factor protein [Brassica oleracea] (GB:AAW81732.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.521183873428929 5.39740914491983 0.000225870905275408 1 6.0726217008885 4.14979065005801 0.521183873428929 0.0866187266150071
AT3G51180_at 2.14076215499000 3.12841613187913 4.01712563115371 3.38549445106913 3.94218265875081 3.83825609215348 2.65426164271095 2.16194285061426 3.21710823612126 2.8036049885761 3.60266754396877 3.74868999759407 3.87193289653534 3.05182292554798 3.07094918312095 3.63650744105759 3.49738447364527 2.83572000892493 2.97906032185896 0.237550093259778 0.240407901178478 0.244129055872878 0.252139068236709 0.240148041336845 0.249823674479156 0.240309427288544 0.238004272746661 0.244052015187793 0.247355628949652 0.237550093259778 0.241147199656327 0.238998537328660 0.239544663884705 0.249791097799405 0.244732544513818 0.257840588669477 0.240359785895789 0.247379422649401 3 3 + 19026433 19026945 19026655.727 19024369 19027164 + gene protein_coding_gene FALSE TRUE AT3G51180.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G66270.1); similar to hypothetical protein [Thellun (GB:ABB45847.1); contains domain CCCH zinc finger (SSF90229) 0.844476903256893 5.3968714930068 0.000226054180531446 1 6.07195223508119 6.36574711382425 0.844476903256893 0.220778474564923
AT2G32060_at 7.62038945192574 7.78714599866419 7.0225538153383 6.94667678542597 7.09456720732213 6.77605101171982 8.25197025416663 8.18055010585795 7.06720112852722 7.29402954859505 7.06563973768719 7.96369135358592 6.70511711776747 6.90679772105037 8.20918139077192 6.89941424254448 7.08989157896753 7.0189951924361 7.25007907435769 0.172726478993443 0.163700271124206 0.165475160800720 0.163429561509791 0.161352348169114 0.172864412436811 0.170105343748073 0.165450549415756 0.164544244662653 0.161670127898858 0.159346175690247 0.159169156913394 0.166659438085769 0.163097889854818 0.160457276953807 0.164686514756102 0.163357111897619 0.174281049023054 0.164738070351248 2 2|0 -|/ 13646341 13646876 13646691.7 13646093 13647447 - gene protein_coding_gene FALSE TRUE AT2G32060.1|AT2G32060.2|AT2G32060.3 40S ribosomal protein S12 (RPS12C) Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Medicago truncatula] (GB:ABE87516.1); contains InterPro domain Ribosomal protein S12E; (InterPro:IPR000530); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.485740311505344 -5.39422625289158 0.00022695819598194 1 6.06865771395107 14.6780435583083 -0.485740311505344 0.0647785179100947
AT1G15400_at 9.16561427948003 9.3904955183406 9.682489862005 9.74283003046523 10.1291062068188 10.0883252743726 8.75729645644815 9.08516704819893 9.21355334423777 9.33322329411616 9.80727345555513 9.29196648900005 9.78967556562332 9.35898465631448 9.19491053417334 9.6354439203509 9.58656683292424 9.61519685437597 9.53259491902716 0.0957164769193793 0.0924024431389435 0.0922776134854867 0.0964616345257394 0.0933731942618425 0.097118150855265 0.100060175672112 0.100883351853310 0.0950399783164584 0.100701358158324 0.10109901130029 0.092994549695115 0.097082186818956 0.107502562672324 0.104184274004331 0.0943618164200622 0.0986312314984073 0.095011762276626 0.0954677510042704 1 1 - 5296400 5296754 5296564.636 5295768 5296897 - gene protein_coding_gene FALSE TRUE AT1G15400.1|AT1G15400.2|AT1G15400.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80180.1); similar to Os06g0601100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058003.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81575.1) 0.49312814360556 5.39180792084512 0.000227788026262717 1 6.06564469294872 18.9525619883495 0.49312814360556 0.0699480693613835
AT1G18540_at 10.1275033675887 10.1645107185275 9.74593512345928 9.76268695565089 9.5227398918934 9.39090883088928 10.3162006307977 10.4536735481047 9.76019070760444 9.73659621529304 9.42619027047131 9.86118968319921 9.13483926710683 9.27878272836516 9.98546855588168 9.13675186279732 9.3767341348126 9.25467501542113 9.52206556530513 0.107104787500476 0.103956287655108 0.104180989382740 0.102823366585098 0.101352842444686 0.103220610512793 0.105616976480090 0.104215148961241 0.112247654227561 0.101352842444686 0.106684064968995 0.105280975072885 0.102441119892653 0.104594084648378 0.105999231121672 0.105884878117217 0.103829155402079 0.102584867825794 0.107282191521390 1 1|0 -|/ 6377480 6378373 6377940.8 6377314 6378573 - gene protein_coding_gene FALSE TRUE AT1G18540.1 60S ribosomal protein L6 (RPL6A) Identical to 60S ribosomal protein L6-1 (RPL6A) [Arabidopsis Thaliana] (GB:Q9FZ76); similar to 60S ribosomal protein L6 (RPL6C) [Arabidopsis thaliana] (TAIR:AT1G74050.1); similar to 60S ribosomal protein L6 (YL16-like) (GB:P34091); contains InterPro domain Ribosomal protein L6, N-terminal; (InterPro:IPR005568); contains InterPro domain Ribosomal protein L6E; (InterPro:IPR000915) -0.450513127712701 -5.39096000960828 0.000228079742551555 1 6.06458802344687 19.4879097679428 -0.450513127712701 0.033702767673192
AT1G80000_at 5.06007442612774 5.15825252381997 4.99070808008455 4.65092998384549 5.0338813866912 4.97320225708023 4.49062753320338 4.51178403034786 4.6941930570619 4.17306308079862 5.06210954765049 5.26622260459433 5.22228008804812 5.6880427601806 5.01954902759983 5.62183360993536 5.06621699201078 4.8315039313817 4.2296100944104 0.231987930862619 0.229126767263655 0.236068327892097 0.230964824327403 0.229126767263655 0.233884595374862 0.229126767263655 0.231826337887745 0.233828054182223 0.230680476199245 0.229932524124822 0.232091622374136 0.231394744966432 0.235184696587547 0.237287321971001 0.234488611628486 0.237277380083648 0.235149403044727 0.245559325774021 1 1|0 +|/ 30099868 30100719 30100223.375 30097817 30102058 + gene protein_coding_gene FALSE TRUE AT1G80000.1|AT1G80000.2 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G15280.2); similar to Os01g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043467.1); similar to glycine-rich protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52900.1) 0.481796770651068 5.39047080046203 0.000228248231111330 1 6.06397831062675 9.65260347644945 0.481796770651068 0.0622077112980773
AT2G26110_at 5.63726714673935 6.14716548250347 5.87201844399755 5.73742026668602 6.57510512253565 7.00235587375155 5.70244463414393 5.57807092092851 4.67886696550712 5.14323402491442 5.92944134201906 6.10424356364478 6.16299519102592 5.9481820260939 5.49610309384562 5.61768804413809 5.62527307288933 4.64180339625462 5.32734195241952 0.245747262476894 0.233875733908664 0.238812868210197 0.239027536368671 0.238480275145752 0.237538243228109 0.23650602660046 0.24353309972094 0.240970212041891 0.238722083778580 0.236663878003733 0.241393310400664 0.230763853373922 0.236159825768961 0.233309513389904 0.235240822534203 0.253196265199642 0.231543532073643 0.230763853373922 2 2 + 11128315 11128701 11128516.727 11127984 11129137 + gene protein_coding_gene FALSE TRUE AT2G26110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26130.1); similar to cDNA-5-encoded protein (GB:AAA50235.1) 0.585694891311221 5.3899742196003 0.000228419393798593 1 6.06335936616461 11.4017462516704 0.585694891311221 0.119410853927401
AT2G19110_at 7.11772803830716 7.23176201331703 7.7414812468697 7.83143383967757 8.04791491442497 8.05066661633472 7.6291382972381 7.54848690791682 7.1434648138826 7.53072234172274 7.82852579487088 7.47349356293216 7.42415579455504 7.49969056218454 7.56588751041487 7.91469423577455 8.23102238716379 7.84681076573231 7.42281240544303 0.127352255089106 0.131056673672253 0.136199813701545 0.128584766883140 0.126758509799614 0.130319641764991 0.131387504920445 0.134356353535188 0.137213749672922 0.131263712258240 0.130836728272755 0.136880413707385 0.132155700209243 0.133816775745752 0.130183958966863 0.133565446549444 0.131013272798892 0.129277644623210 0.127149338906477 2 2 + 8292750 8293312 8293058 8285965 8293527 + gene protein_coding_gene FALSE TRUE AT2G19110.1 HMA4 (Heavy metal ATPase 4); cadmium-transporting ATPase Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport. Identical to Putative cadmium/zinc-transporting ATPase 2 (EC 3.6.3.3) (EC 3.6.3.5) (HMA4) [Arabidopsis Thaliana] (GB:O64474); similar to HMA3 (Heavy metal ATPase 3), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT4G30120.1); similar to HMA2 (Heavy metal ATPase 2), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT4G30110.1); similar to Cadmium/zinc-transporting ATPase 4 (GB:Q9SZW5); similar to putative heavy metal transporting P-type ATPase [Thlaspi caerulescens] (GB:CAD98808.1); similar to P1B-type heavy metal transporting ATPase [Thlaspi caerulescens] (GB:AAS89468.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; (InterPro:IPR006404); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type copper-transporter; (InterPro:IPR001756) 0.446731948243015 5.38973902699067 0.000228500508132236 1 6.06306620371327 15.1941772827872 0.446731948243015 0.0287538720685559
AT2G23320_at 8.12953519685885 8.06060024040167 8.21762961317407 8.6409220827785 8.67247903562583 7.67948061229775 5.76214457666402 5.96068375155356 7.53913056902673 7.04913681571507 7.88709749920982 7.92830433660203 7.38917850757515 7.61664044343446 7.68955779845278 7.70008968119303 6.82501969118856 7.11213811296564 7.3814934802861 0.229660216553817 0.226246534388809 0.252636015332519 0.233642107935722 0.231203928357976 0.253356748264876 0.234389746476094 0.243344379462976 0.247192540098027 0.243871425557249 0.231554979651119 0.233797904546164 0.238285472378968 0.240913948828558 0.233953993978142 0.227947693018087 0.239337713614393 0.239182833228148 0.237185349122501 2 2 + 9932446 9933200 9932808.727 9932013 9933452 + gene protein_coding_gene FALSE TRUE AT2G23320.1|AT2G23320.2 WRKY15 (WRKY DNA-binding protein 15); transcription factor Encodes WRKY DNA-binding protein 15 (WRKY15). Identical to Probable WRKY transcription factor 15 (WRKY DNA-binding protein 15) (WRKY15) [Arabidopsis Thaliana] (GB:O22176); similar to WRKY7 (WRKY DNA-binding protein 7), transcription factor [Arabidopsis thaliana] (TAIR:AT4G24240.1); similar to WRKY transcription factor NtEIG-D48 [Nicotiana tabacum] (GB:BAB16432.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.759818265875617 5.38885756167345 0.000228804784389702 1 6.06196738777214 15.0613128289211 0.759818265875617 0.190312315141191
AT2G24580_at 4.83654306114582 5.13755826718054 4.86008267005066 4.68833413442758 4.39113447613475 4.5252630533303 5.5351640310398 5.1425128092442 4.85144787903367 5.90133074706189 4.60089945816052 4.86332625644841 4.555798437425 4.86555751118901 4.38119657934416 5.20077229166068 5.27481178468952 4.74173149363578 5.23258389872669 0.198872518290149 0.199503594321553 0.201636345700385 0.193065485800326 0.196668693655939 0.203516450609519 0.194273181667222 0.218887588428031 0.215532039702112 0.201158599039376 0.199544320304454 0.191887491880623 0.195731121316232 0.192063983281038 0.215547230002283 0.193183069633847 0.196282838018845 0.2006118490814 0.195226227933802 2 2 - 10452081 10452551 10452340.182 10451869 10453321 - gene protein_coding_gene FALSE TRUE AT2G24580.1 sarcosine oxidase family protein Identical to Probable sarcosine oxidase (EC 1.5.3.1) [Arabidopsis Thaliana] (GB:Q9SJA7); similar to LOC558601 protein [Danio rerio] (GB:AAI16494.1); similar to Os09g0498500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063566.1); similar to Unknown (protein for IMAGE:7902439) [Danio rerio] (GB:AAI24588.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Sarcosine oxidase, monomeric; (InterPro:IPR006281) -0.532341703519191 -5.38192268195964 0.000231213727734031 1 6.05331763055835 9.95905701357415 -0.532341703519191 0.0935573223619571
AT1G35510_at 5.94816383283847 6.1106418677765 5.28002692250176 5.78332554751608 5.99407312582839 6.04750518919666 6.74431876982382 6.6286171346689 7.01767697040065 6.54424040717225 6.61839391958427 6.65760320774475 6.394042207777 6.6399988876947 6.1110475737925 6.4952399783766 6.29456865348805 5.9767826476329 7.08835044373088 0.202565748624046 0.196349466926736 0.197622443231341 0.199382256935744 0.201171039588091 0.197620120037184 0.193897914188320 0.201238822745102 0.207998111754809 0.201701743702950 0.192566813397634 0.198874929255865 0.202759882477703 0.203673950482128 0.198246819761833 0.192566813397634 0.199296809660097 0.205624005229574 0.199173527644281 1 1|0 +|/ 13073301 13074625 13074066.6 13071143 13074927 + gene protein_coding_gene FALSE TRUE AT1G35510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01480.1); similar to Growth regulator protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96586.1); similar to Os12g0174100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066285.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.533332838803058 -5.38082191177726 0.0002315985691737 1 6.05194386175449 12.7080251695751 -0.533332838803058 0.0941440388951877
AT2G33580_at 5.14725358722214 5.43127230772706 6.18851458944701 6.60988706731823 4.81288922795524 4.90353430230786 3.06047663970250 3.34271539950621 4.81649165799525 3.49452265332888 3.40936111553294 3.67935622560098 3.55019826467975 4.10235578310676 3.08843795486479 3.79633396301251 3.82684464522439 3.9273002873076 3.56783073943254 0.293345491504785 0.288038382132693 0.309878294836622 0.29988653305638 0.280680627852291 0.289511553611214 0.298406444552648 0.283518123527953 0.280680627852291 0.283790141477027 0.280680627852291 0.280680627852291 0.280789955779739 0.284713049137801 0.289467013053805 0.280680627852291 0.290279479935555 0.283616323219027 0.280680627852291 2 2 - 14226952 14227497 14227170.364 14226699 14228937 - gene protein_coding_gene FALSE TRUE AT2G33580.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23770.1); similar to Os02g0193000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046166.1); similar to Os06g0625300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058111.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94286.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) 0.548092663107468 5.38062100551893 0.000231668881619851 1 6.05169310579215 8.75313716356583 0.548092663107468 0.101808022794718
AT2G22300_at 8.63878574712582 8.6477263095705 9.05425381374695 9.281021544321 9.61669838692474 8.75295335561015 7.91216375132814 7.75621794889512 8.13816681370403 8.08250903692901 8.70087892162913 8.53694644547637 8.13548609187682 8.76568148701167 7.97392680012827 8.9291538850008 8.36198389955212 8.0749735533819 7.86295137895894 0.153125614189039 0.151039279140208 0.154409249263680 0.151039279140208 0.157953061569246 0.162353418896921 0.151039279140208 0.160727841455389 0.154013122107668 0.151039279140208 0.152375114145066 0.154834621151200 0.160311873725806 0.154411718882859 0.151039279140208 0.151039279140208 0.151905717961008 0.153979227747995 0.155952157467182 2 2|0 +|/ 9482786 9483522 9483126.2 9478468 9483726 + gene protein_coding_gene FALSE TRUE AT2G22300.1 ethylene-responsive calmodulin-binding protein, putative (SR1) Identical to Calmodulin-binding transcription activator 3 (Signal-responsive protein 1) (Ethylene-induced calmodulin-binding protein a) (EICBP.a) (Ethylene-induced calmodulin-binding protein 1) (EICBP1) (CMTA3) [Arabidopsis Thaliana] (GB:Q8GSA7;GB:Q9FPR9;GB:Q9SID7); similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G64220.2); similar to EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN), calmodulin binding / transcription regulator [Arabidopsis thaliana] (TAIR:AT5G09410.1); similar to anther ethylene-upregulated protein ER1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94398.1); similar to putative calmodulin-binding transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAR06369.1); similar to Putative calmodulin-binding protein similar to ER66 [Oryza sativa] (GB:AAM08530.1); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.672255739115313 5.37989653290797 0.000231922618292411 1 6.05078881359352 16.9388549215425 0.672255739115313 0.156887020303027
AT2G07680_at 2.85017986861972 2.98537033761747 2.84567304878686 2.563002021993 3.07170726229795 2.42649421054906 4.27326273788385 3.52618963001316 3.44143810067289 4.30007228375317 3.39475831683683 3.30338289010824 3.19418385519770 3.10592233030367 3.18421694090805 3.62426865354654 3.34246496359292 3.25988117425922 4.49053115273035 0.213553724540963 0.216663702317784 0.219410059832494 0.216480292450849 0.217702674888092 0.215862899624056 0.218393324852877 0.217958428954336 0.218756277949726 0.217318057895254 0.217000385616623 0.213251490892253 0.21329329973772 0.220970757717501 0.213251490892253 0.214403411483315 0.213251490892253 0.213251490892253 0.215962695547528 2 2 + 3521813 3522444 3522213 3515959 3522488 + gene protein_coding_gene FALSE TRUE AT2G07680.1 ATMRP11 (Arabidopsis thaliana multidrug resistance-associated protein 11) member of MRP subfamily Identical to Multidrug resistance-associated protein 11 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 11) (ATP-energized glutathione S- conjugate pump 11) (MRP11) [Arabidopsis Thaliana] (GB:Q9SKX0); similar to ATMRP2 (MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G34660.1); similar to ATMRP13 (Arabidopsis thaliana multidrug resistance-associated protein 13) [Arabidopsis thaliana] (TAIR:AT1G30410.1); similar to ATMRP1 (Arabidopsis thaliana multidrug resistance-associated protein 1), xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT1G30400.2); similar to PREDICTED: similar to ATP-binding cassette, sub-family C, member 10 [Gallus gallus] (GB:XP_419506.2); similar to PREDICTED: similar to CG7806-PA [Apis mellifera] (GB:XP_001121775.1); similar to putative multidrug resistance-associated protein 7 [Oryza sativa (japonica cultivar-group)] (GB:BAD72522.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.729121898042413 -5.3788933886548 0.000232274443381906 1 6.04953652519528 6.75697592454327 -0.729121898042413 0.179226281655843
AT1G74260_at 8.30235619452758 8.4696787243351 7.99122714156923 8.03563321972137 8.23756156584686 7.87159224849947 8.84573300333961 8.69039288427524 8.59726416468793 8.68712080536849 8.09275149982313 8.31591339443823 7.7551050018048 8.09082796397449 8.4384332706589 8.3240820575357 8.17329483576333 8.16997935420876 8.59547562277287 0.14556285892885 0.143882487816553 0.153113854643146 0.158987338429849 0.139750401045343 0.142728743497676 0.146075566899533 0.146716723060585 0.153954407152704 0.139382597648798 0.140662760185797 0.141575707208360 0.149221123118586 0.145093368855505 0.144267625229093 0.141340477550690 0.145172777912292 0.145214947400534 0.142502282189652 1 1 - 27926698 27927184 27926891.455 27926494 27931107 - gene protein_coding_gene FALSE TRUE AT1G74260.1 catalytic Identical to Probable phosphoribosylformylglycinamidine synthase, chloroplast precursor (EC 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) [Arabidopsis Thaliana] (GB:Q9M8D3); similar to phosphoribosylformylglycinamidine synthase [Glycine max] (GB:AAO23951.1); similar to formylglycinamide ribonucleotide amidotransferase [Vigna unguiculata] (GB:AAL55431.1); similar to putative formylglycineamide ribotide amidotransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD82369.1); contains InterPro domain Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria; (InterPro:IPR010073); contains InterPro domain AIR synthase related protein, C-terminal; (InterPro:IPR010918); contains InterPro domain AIR synthase related protein; (InterPro:IPR000728) -0.499804216521998 -5.3782289528906 0.000232507787915961 1 6.04870696818943 16.7038561827071 -0.499804216521998 0.0750412639917826
AT1G21060_at 4.46956578232192 5.01183571302224 3.87850791009463 3.63356486734225 5.32059792899807 4.16073591365207 5.63776018912023 5.43003228255446 6.21052798665439 5.54596656968898 5.81131014603706 5.54209334039126 4.87326949517103 5.197789304562 4.57709558994913 4.90456875252496 4.39442492621311 5.06297506381087 5.8887953327441 0.18651357772451 0.190836459520469 0.193926123739632 0.195183966330683 0.197168674090118 0.185525643764961 0.189387195736668 0.195037486362131 0.204842342902934 0.187885316581273 0.190262814120481 0.184937383521818 0.189807641947267 0.190054905767268 0.186426979135918 0.193473470433460 0.191393256221349 0.197314486450128 0.188261877060881 1 1|0 +|/ 7373229 7373922 7373603 7371788 7374093 + gene protein_coding_gene FALSE TRUE AT1G21060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76620.1); similar to Os09g0493400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063544.1); similar to Os08g0515700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062234.1); similar to putative ternary complex factor MIP1 [Antirrhinum majus] (GB:AAO59425.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.862634652881512 -5.3758111453273 0.000233359006436510 1 6.04568763140729 10.1564271352357 -0.862634652881512 0.228437698483992
AT4G30340_at 6.28479674780214 6.38369879903353 6.54084953229476 6.1399498156366 6.85478653081958 6.63122033086706 6.34304303664787 5.84164072453749 5.63352016620837 5.45686691875547 6.85291062961748 6.99530828236192 6.14178222829992 6.49770059479647 6.69702998830886 5.61129439821995 4.94031162831708 6.41891038833094 5.20596540032995 0.199986806870650 0.185630771200225 0.196947335577310 0.198389852621569 0.187988948338864 0.197832713840835 0.191860115373222 0.185630771200225 0.205825248250155 0.193907770822468 0.211753674187204 0.191269978487721 0.188616413125657 0.196602193574062 0.190212006434551 0.195088287124649 0.197671570219067 0.19712236151565 0.191616460398034 4 4 - 14839264 14839955 14839700.545 14838315 14841073 - gene protein_coding_gene FALSE TRUE AT4G30340.1 ATDGK7 (DIACYLGLYCEROL KINASE 7); diacylglycerol kinase encodes a diacylglycerol kinase. Applying a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings. similar to diacylglycerol kinase, putative [Arabidopsis thaliana] (TAIR:AT2G18730.1); similar to Diacylglycerol kinase accessory re (GB:ABE81286.1); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) 0.582847623791446 5.37439690732214 0.000233858439914924 1 6.04392105514504 12.2282599458946 0.582847623791446 0.118878392361012
AT3G21070_at 3.33759683556475 3.2665639006526 3.90968308186477 3.98742341687108 3.70588105274602 4.02998218325986 3.50968630984876 3.72757599345903 3.36639194928137 2.8840442176091 3.61153433839771 3.83970425237149 3.41981456375659 3.41815409245272 3.45125714010389 3.08560862276299 3.61798252515879 3.71824646124364 2.70628048876084 0.181104861759507 0.188465795795241 0.191347646756266 0.189939154656135 0.19508918093991 0.190359932971335 0.185124650453774 0.187692381786146 0.188024342194529 0.183707835586037 0.187373499245886 0.188392255322423 0.188812822203911 0.188304665830370 0.188486240109729 0.191715050948219 0.186459271837513 0.185008952592262 0.188596143696076 3 3|0 -|/ 7382367 7383350 7383002.444 7380197 7383986 - gene protein_coding_gene FALSE TRUE AT3G21070.1|AT3G21070.2 NADK1 (NAD kinase 1); NAD+ kinase/ NADH kinase/ calmodulin binding|NADK1 (NAD kinase 1); NAD+ kinase Encodes a protein with NAD(H) kinase activity. Identical to NAD(H) kinase 1 (EC 2.7.1.23) (EC 2.7.1.86) (AtNADK-1) (NADK1) [Arabidopsis Thaliana] (GB:Q56YN3;GB:Q6TXT3;GB:Q8RX27;GB:Q9LJC5); similar to NADK2 (NAD kinase 2), NAD+ kinase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G21640.1); similar to Putative NAD kinase 3 (GB:Q60E60); similar to Os01g0957000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045444.1); similar to Probable NAD kinase 1 (GB:Q5JK52); contains InterPro domain ATP-NAD/AcoX kinase; (InterPro:IPR002504) 0.491301102392345 5.37101139421013 0.000235058640405594 1 6.03969062310394 6.93722908082406 0.491301102392345 0.0699977117810988
AT4G02400_at 3.98814509439081 4.30208203675982 4.22586187447531 4.23372889260914 3.80840557371591 3.40060624913855 4.45800097415991 4.66662288487536 3.61619807051894 3.62073378832077 2.87164871778764 3.52412386172037 2.75467499766511 3.06310136653767 3.49907853915416 3.12666824621286 2.85818045580644 3.15238595800501 3.98583323294903 0.228495187661006 0.236934965907522 0.232312937825295 0.247423766295483 0.228495187661006 0.249124463860434 0.234546509669524 0.246854320940875 0.231304449495285 0.228495187661006 0.229263261487806 0.242438195922927 0.235146924819340 0.234742544800696 0.232075203600994 0.23281176823748 0.246702371977848 0.231000021394551 0.228495187661006 4 4 + 1057245 1057782 1057517.9 1054199 1057998 + gene protein_coding_gene FALSE TRUE AT4G02400.1 similar to U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] (TAIR:AT5G08600.1); similar to hypothetical protein DEHA0A03355g [Debaryomyces hansenii CBS767] (GB:XP_456468.1); similar to Os03g0343300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050076.1); contains InterPro domain Utp14 protein; (InterPro:IPR006709) -0.535625514731753 -5.36652375820077 0.000236659648305519 1 6.03407982887776 7.55900893007763 -0.535625514731753 0.0961102797018637
AT3G63160_at 11.3703568125302 11.3164889315009 10.4220604040179 10.3759202134605 11.1811151549197 10.8631070559021 10.3995234592007 10.2284097776545 10.3677138873128 10.3136565965205 11.7324782640336 11.6474851976293 10.8251040601964 11.4960734067959 11.6661183509759 10.3282449159724 10.6854897275048 11.0563779778791 9.6146469940446 0.082050326375115 0.0835828456108107 0.0828877148345713 0.0883347162891312 0.082050326375115 0.0849362793813443 0.0845064808545003 0.0861726361397531 0.0879836500870093 0.0837465869581532 0.0848490934131502 0.082050326375115 0.0828346874743699 0.0840896607382448 0.0847675916392125 0.0826284735005366 0.0856687154140542 0.082050326375115 0.0914066039179683 3 3 - 23344778 23344931 23344848.182 23344488 23345009 - gene protein_coding_gene FALSE TRUE AT3G63160.1 similar to outer envelope membrane protein, putative [Arabidopsis thaliana] (TAIR:AT3G52420.1); similar to chloroplast outer envelope membrane protein [Erysimum cheiri] (GB:AAK52964.1) 0.481427478425465 5.36339373014549 0.000237783169969520 1 6.0301642739754 21.4087947162730 0.481427478425465 0.0636878097741472
AT2G39840_at 7.80099217377865 8.1919207617797 8.10532595837554 7.95903769124563 8.2810171275988 8.01530811250841 7.75569587284923 7.58485741131451 6.81067758824125 6.55575281354348 7.27670398085192 7.5551512247309 7.60345764490077 7.66341335538876 6.75132861180933 7.49058553239392 7.69660163169894 7.08580395060433 6.42557566399079 0.216189526531692 0.215165027960915 0.214719502571886 0.219808120465868 0.220124873390251 0.215546912778603 0.222611564888462 0.220717326984094 0.222379496651049 0.213916384560891 0.214091622657799 0.211498471303832 0.209487020967607 0.228478440807251 0.219310052340964 0.211595819822911 0.224545307092117 0.217914636414115 0.210469732867343 2 2|0 +|/ 16635311 16635790 16635492.8 16634336 16636367 + gene protein_coding_gene FALSE TRUE AT2G39840.1 TOPP4 (Type one serine/threonine protein phosphatase 4); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) (TOPP4) [Arabidopsis Thaliana] (GB:P48484); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to serine/threonine protein phosphatase 1; PP1 [Malus x domestica] (GB:AAD56010.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.524925526895214 5.36232360192616 0.000238168590151441 1 6.0288251762207 14.9556274370842 0.524925526895214 0.0905875426116825
AT3G04960_at 1.91387706425790 1.78744136874995 2.39924085687660 2.32614056140911 2.26830339232645 2.32499532164332 2.83603405121900 2.78542418664024 2.47114387032046 2.67297968911141 3.44996453449815 3.27247933572297 3.50009024237884 3.57493298582797 3.09019857909820 3.21504764825374 3.54869936479033 3.09260841433435 2.21633001984717 0.211121611766196 0.220074208853505 0.211304349594592 0.210179218947907 0.208463981808371 0.210523648642598 0.211399125858894 0.212408455289247 0.211016853060222 0.220263153051295 0.207777968740480 0.213823064309963 0.222936346588743 0.213044627031485 0.222834762323128 0.209675429084555 0.2268285897605 0.210455800041680 0.211330341432649 3 3 + 1375225 1375751 1375476.909 1373694 1375856 + gene protein_coding_gene FALSE TRUE AT3G04960.1|AT3G04960.2|AT3G04960.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27980.1); similar to heat shock protein DnaJ N-terminal domain-containing protein [Musa acuminata] (GB:ABF69988.1); contains domain DNAJ/HSP40 (PTHR11821); contains domain DNAJ HOMOLOG SUBFAMILY C MEMBER 12 (PTHR11821:SF4) 0.444246988516909 5.36191756040907 0.000238315004712122 1 6.02831702488482 5.22842568266003 0.444246988516909 0.028491006105143
AT2G31190_at 5.00870569361853 5.08232493496222 5.44701844102196 5.76501971577017 5.74570513426924 5.76398766977769 5.52186426368252 5.3223552622628 4.34123154640632 4.90838988131561 4.90498783204647 4.87725564166737 5.19147431381648 5.21816356888502 5.14164624886711 6.02539749655626 5.13431522161741 5.36430699569915 4.8776058198689 0.216143930230826 0.200398236000267 0.200398236000267 0.205834813216824 0.211781300445452 0.208679628125626 0.208471518489118 0.203502092837425 0.213480326956162 0.202901307411289 0.200398236000267 0.207314225054886 0.200398236000267 0.213255822939337 0.213529878606736 0.205600359866767 0.216575474565880 0.205026524246665 0.205742334094760 2 2 - 13298548 13299295 13298943 13298303 13300839 - gene protein_coding_gene FALSE TRUE AT2G31190.1 similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to Os04g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053319.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE91893.1); similar to OSJNBa0073E02.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05447.3); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968); contains InterPro domain Virus capsid protein, alpha-helical; (InterPro:IPR008935) 0.484868933637856 5.36071450566241 0.00023874937584309 1 6.02681125593555 10.4277572214663 0.484868933637856 0.0662785120678542
AT1G68020_at 5.14592216836596 5.32624983106194 5.29988213763908 5.2535984923865 5.87082757334448 5.78720131338539 5.29763385084609 5.43713476468125 4.3939940212264 4.2174850694315 4.92032234890012 5.03053219918711 5.70415412916207 5.00542833321154 4.79565055830435 5.06820644257334 5.76421582694164 5.12224388310048 4.9351415414705 0.20404563897385 0.197321514997117 0.199955491779732 0.197413324459398 0.197180661261014 0.196371939283820 0.195668033286275 0.201666640831996 0.203806118513101 0.204953170558066 0.212950257640210 0.194321817411285 0.200006943927159 0.203134218584368 0.195615448435469 0.194786994805038 0.197149855760603 0.207158216121388 0.200461519245005 1 1 + 25502711 25503224 25502954.727 25500953 25504037 + gene protein_coding_gene FALSE TRUE AT1G68020.1|AT1G68020.2 ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase|ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G06410.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)] (GB:AAN52740.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830)|similar to ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G06410.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)] (GB:AAN52740.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.455973114956581 5.35923397548359 0.000239285085756024 1 6.0249578347881 10.2732484794049 0.455973114956581 0.0427813033469588
AT1G78060_at 6.49064117486717 6.7167657470316 4.85142384437457 4.82072011898281 6.13301361676999 6.29387736844842 7.13943501692727 6.91543923104735 6.19109313002973 7.4030364379322 7.40852353332156 7.79242303754924 6.9187632165907 7.22941185327545 8.17235865763842 6.78583852562377 6.802304293578 7.86654032084377 7.52135361614254 0.188030516806366 0.175502392968918 0.195084604982706 0.191206513889211 0.179352812258844 0.194991640745706 0.179259902933936 0.195684434172912 0.212672425328180 0.184623508586596 0.175502392968918 0.188597647575810 0.18282742798235 0.183473745142949 0.191116009751193 0.175569545510782 0.185840815717702 0.183279160149820 0.175502392968918 1 1 - 29354692 29355232 29355012.636 29354573 29357818 - gene protein_coding_gene FALSE TRUE AT1G78060.1 glycosyl hydrolase family 3 protein similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G19620.1); similar to Glycosyl hydrolase family 3 C terminal domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96800.1); similar to beta-D-xylosidase [Oryza sativa (japonica cultivar-group)] (GB:AAX92971.1); similar to beta-D-xylosidase [Hordeum vulgare] (GB:AAK38482.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.478642760111638 -5.35921447743437 0.000239292149373419 1 6.02493342326347 13.3754219270582 -0.478642760111638 0.0619444569174257
AT2G45920_at 1.79752874902771 1.98735825377603 2.76342883975677 2.8008699898919 2.98868026595668 2.95003415705227 1.91867734284025 1.67154456293873 3.15699729016918 2.52213409976842 2.99289553974171 2.83477920337781 2.81781940447433 3.04467900243868 2.8016674935552 2.91098847960138 2.62109758953156 3.16617326636946 3.29769579104179 0.229506382760967 0.22850162417324 0.224785944953262 0.227776443695479 0.231023020620231 0.228230642016144 0.227297877752746 0.230503633162290 0.234910117605888 0.231735641729115 0.227953162771884 0.224785944953262 0.225772869307998 0.234461767429012 0.239056465329386 0.224785944953262 0.253969276436569 0.236059444945609 0.231376786304284 2 2|0 +|/ 18907672 18908143 18907964.2 18906157 18908376 + gene protein_coding_gene FALSE TRUE AT2G45920.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G61390.2); similar to Os10g0552400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065331.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains InterPro domain U box; (InterPro:IPR003613) 0.46923142820593 5.35886143503427 0.000239420085425712 1 6.02449140292379 5.30528438234474 0.46923142820593 0.054726116179538
AT1G48620_at 7.56387607944336 7.16852315395555 7.59801472228325 7.78838775387298 7.94766997996805 8.18945419382728 6.33847753679185 7.1059034334562 6.56604446889879 6.72414110287388 7.15263576261925 7.39319185613465 7.16176235558786 7.28357654377568 7.49208973274591 7.54303608753947 7.19563791976935 6.73393806355505 6.9101057087377 0.174594506552338 0.182568552583399 0.170452694404683 0.173718500834548 0.177401129836811 0.170452694404683 0.187954572436234 0.190429328487817 0.197397419780000 0.185693683019974 0.179916162591205 0.180577153859257 0.174296122227914 0.184175935422867 0.171168919823108 0.174376808923856 0.181080358311938 0.187032724413332 0.207936163085956 1 1 - 17977869 17979000 17978503.455 17977365 17980057 - gene protein_coding_gene FALSE TRUE AT1G48620.1 histone H1/H5 family protein similar to HON4, DNA binding [Arabidopsis thaliana] (TAIR:AT3G18035.1); similar to hypothetical protein MtrDRAFT_AC139526g21v1 [Medicago truncatula] (GB:ABE80152.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.673869862477632 5.35878527219762 0.00023944769495723 1 6.02439604167844 14.4514953402262 0.673869862477632 0.158602304224122
AT3G23990_at 6.4794856038264 6.91595571074408 6.02493546930827 5.97316585148098 5.79248103085141 5.61410500657194 7.47052300537708 7.49459253799183 5.3109567718712 5.58320168307859 5.16909192394298 6.06955041645303 4.97917163007369 5.32131005395923 6.3472111672607 5.86442937156866 6.10196907496812 5.66439344091193 5.51344759801394 0.194527663449201 0.195349071599623 0.193182748937838 0.192161513941189 0.186404838684777 0.198027294573916 0.197149347503534 0.205255116110378 0.196493539458891 0.188488079890861 0.199465503322520 0.188037135951330 0.188213327000152 0.186404838684777 0.197710996533965 0.188240198824524 0.189891447493171 0.186455193784455 0.193804289714258 3 3|0 +|/ 8671310 8672238 8671771.333 8668925 8672585 + gene protein_coding_gene FALSE TRUE AT3G23990.1 HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria. Identical to Chaperonin CPN60, mitochondrial precursor (HSP60) (CPN60) [Arabidopsis Thaliana] (GB:P29197;GB:Q9LIQ8); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT2G33210.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) (GB:Q05046); similar to Chaperonin CPN60-1, mitochondrial precursor (HSP60-1) (GB:Q05045); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.509264253846989 -5.35339340124029 0.000241410902475898 1 6.01764238189467 12.0500769782924 -0.509264253846989 0.0821934226954784
AT3G46060_at 9.06223576366914 9.39339867056842 9.41023297201136 9.70755400202046 9.74166644567265 9.79412964213912 8.96974901289684 9.2615800812579 8.96914422677236 8.67695363222927 9.56783595312162 9.37889934662173 9.52356157129874 9.34507726547916 9.24456582214975 9.4666620234236 9.45949137514862 9.32849809153683 8.90823588047954 0.119208949614316 0.114341802936383 0.117234913465813 0.116598197961853 0.123698209382095 0.115895181555143 0.122499991739477 0.112107054092834 0.127438469717941 0.130511774331391 0.111886744292530 0.110616496524052 0.112796440884334 0.114543240817435 0.115986479317156 0.111902063354854 0.118046802584515 0.115439926651792 0.128641175514397 3 3|0 +|/ 16929167 16930684 16930008.875 16928574 16931003 + gene protein_coding_gene FALSE TRUE AT3G46060.1|AT3G46060.2 ARA3; GTP binding|ARA3 small GTP-binding protein (ara-3) Identical to Ras-related protein ARA-3 (ARA-3) [Arabidopsis Thaliana] (GB:P28186); similar to Ras-related GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59840.1); similar to Sigma-54 factor, interaction re (GB:ABE82101.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.527267117316637 5.34957446442453 0.000242811733512999 1 6.01285575174939 18.5504525792418 0.527267117316637 0.0925456516037498
AT4G33940_at 7.17132006956009 6.96712453791719 7.42762020315417 7.80265786386586 7.93297990677438 7.68793323134315 6.79757770290111 6.71081679027597 6.21259673818485 6.49597939925941 6.70764265320561 6.39521318090223 6.63170957499319 6.633435002179 6.51415121632396 6.59055593124268 6.50111577438727 6.6230179512188 6.32080465672553 0.224918532492944 0.226221953721301 0.223652143131909 0.220958960124826 0.226274055984844 0.237029350391748 0.223509475457080 0.229329970105554 0.233691817650028 0.228403781027445 0.233738990891428 0.221325724445109 0.225942419191370 0.230586502980284 0.242081007309004 0.229169015278907 0.245476482178683 0.221285992133318 0.220958960124826 4 4|0 +|/ 16266281 16267543 16266981.556 16266028 16267791 + gene protein_coding_gene FALSE TRUE AT4G33940.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72175.1); similar to PREDICTED: similar to RNF170 protein [Gallus gallus] (GB:XP_424879.2); similar to Os03g0839000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051839.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.516283127643731 5.34856428699979 0.000243183720329882 1 6.0115891624144 13.7711198341973 0.516283127643731 0.0865142464595248
AT3G57070_at 6.9881487087134 7.40013649071844 6.45915527422237 6.06409133975109 7.46334029959174 7.21298438246307 8.17577650324483 8.19387641248763 8.07165388028328 8.13079674241555 8.08336039641466 8.0673164329364 8.03486136553552 7.9941147187889 6.95556946449116 8.04293654864574 7.35846981022588 8.22633820863106 8.00697540516668 0.190187251455744 0.182225905140437 0.197102894264035 0.209917793210056 0.183550409780489 0.186367298694107 0.181351406618612 0.182649895871322 0.189597678774654 0.178336991227662 0.183466510909055 0.188591432164394 0.188889660664754 0.179476763957853 0.191438348410385 0.181840888928467 0.195092647491455 0.178336991227662 0.181094415377144 3 3 + 21135809 21136376 21136015 21134903 21136626 + gene protein_coding_gene FALSE TRUE AT3G57070.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G41330.1); similar to Thioredoxin fold [Medicago truncatula] (GB:ABE87618.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.557014756265258 -5.34834869471144 0.000243263188168024 1 6.0113188228236 15.202278448481 -0.557014756265258 0.107908309761317
AT1G03270_at 1.59636903972470 1.47243056390692 1.47879248205609 1.34587170381343 1.14968451727659 1.36111796281678 2.1440080036068 2.50373054016323 2.19632662726256 2.55059077682977 2.25559702608899 2.27027725135408 1.67672920754664 1.90220407615343 2.76195513500202 1.93873104455913 1.33637243639710 1.76451750569959 2.44928641748561 0.203587991799379 0.206314988113796 0.203648248037657 0.205379187243329 0.214222373662813 0.212061464101461 0.209104236685738 0.203587991799379 0.213411654290794 0.207516821443821 0.203587991799379 0.208873625666822 0.212580621621364 0.206559607118474 0.208174324723097 0.206064961270463 0.205952771633373 0.203587991799379 0.212481719073621 1 1|0 +|/ 801517 802402 801882.444 799191 802436 + gene protein_coding_gene FALSE TRUE AT1G03270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14240.1); similar to Os05g0395300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055462.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07635.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.502852258601108 -5.3463320065288 0.000244007881105211 1 6.00878961303183 3.82501688544195 -0.502852258601108 0.0787604237343545
AT1G23550_at 2.30462969659431 2.93903081546053 2.509283487539 1.98289494876390 2.34923869411488 2.36726817919032 3.54489860137525 3.77636641693058 2.67503482982453 3.15750175433532 2.564852075754 2.57019865649783 2.45705170414812 2.39872723260821 2.29533444635746 2.93355954411722 2.83843087155453 2.36169025455380 3.1888975957698 0.228844160172359 0.229576255541133 0.227964994743198 0.229621074553348 0.226830113150570 0.239000782249323 0.235506023791136 0.236617422796972 0.234506704353647 0.232881082104264 0.231420849943961 0.228820100140490 0.233300609443833 0.227674525568645 0.235102143122669 0.226830113150570 0.248717579233762 0.240886453073687 0.229363801779987 1 1|0 +|/ 8351351 8351931 8351726.667 8350782 8352780 + gene protein_coding_gene FALSE TRUE AT1G23550.1 SRO2 (SIMILAR TO RCD ONE 2); NAD+ ADP-ribosyltransferase Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to SRO3 (SIMILAR TO RCD ONE 3), NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] (TAIR:AT1G70440.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93110.1); contains InterPro domain PARP, catalytic; (InterPro:IPR012317) -0.646862091816232 -5.34601165542551 0.000244126398284014 1 6.00838778035142 5.50151401741715 -0.646862091816232 0.148207158837998
AT1G48630_at 7.63608764378267 8.13736458256105 6.9427309473986 7.23777702790776 6.63655020528095 6.52526627466245 8.66220799730215 8.74182363623443 6.36808410379112 7.32478858121702 7.01474432946044 8.36933943148905 7.0389283739042 6.92813214561573 8.55863962344913 7.09282321954601 6.91374607871531 7.12959906746823 7.35787002741868 0.193453150007715 0.198427391666606 0.194778320295779 0.192780412659745 0.193217224548848 0.201337622287905 0.192055457914797 0.194381353775743 0.212240720536179 0.199845115264924 0.203061317609649 0.190561443934654 0.190132678529801 0.195354894054127 0.193128367984187 0.195362982828315 0.203082804433449 0.198114784037295 0.196582193894121 1 1|0 -|/ 17986066 17986362 17986240.5 17985446 17986995 - gene protein_coding_gene FALSE TRUE AT1G48630.1 guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative similar to guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) [Arabidopsis thaliana] (TAIR:AT3G18130.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.547480027463618 -5.34363638861792 0.000245007061732589 1 6.00540778535665 14.7638051749821 -0.547480027463618 0.103407007146171
AT1G14620_at 4.1705138567055 4.56912640337497 3.41637614546162 3.6098583059129 3.51284534863137 3.20588444179626 3.99893256956409 4.74671282986489 2.61931245169575 3.35988085634947 3.01927820166108 3.28718874211757 2.85932215934839 2.72018951381609 3.29271620355244 2.64493552398454 2.59142787039317 2.85293592609827 3.98645538109837 0.193453861158025 0.193516603973676 0.183715207294504 0.187289259694608 0.182374859762529 0.190230139163779 0.185085409234329 0.197843386205595 0.189160972867979 0.188156743324259 0.183963829676063 0.193396443087501 0.183563297451710 0.182331856354095 0.181452913466981 0.187622897570352 0.190198441600964 0.189845794901765 0.189033570383955 1 1|0 -|/ 5014982 5016369 5015461.8 5014749 5016599 - gene protein_coding_gene FALSE TRUE AT1G14620.1 DECOY (endoxyloglucan transferase A2) Belongs to a endoxyloglucan transferase family (EXGT). similar to hypothetical protein MtrDRAFT_AC152407g10v1 [Medicago truncatula] (GB:ABE77505.1); contains domain FAMILY NOT NAMED (PTHR13124); contains domain SUBFAMILY NOT NAMED (PTHR13124:SF2) -0.674231991593288 -5.34350496295701 0.000245055888024202 1 6.00524286984743 7.01897231966527 -0.674231991593288 0.159522951630005
AT2G20490_at 7.19695472019466 7.24555220730877 6.42008610776473 6.78372961806674 7.39395119020211 7.36150195560511 7.07688689425327 6.91693447727384 6.39460052493729 6.49763472161317 5.59141009253339 5.75408305990746 6.01057108278006 5.56491065298644 6.20105045049556 5.81604356805354 6.50003980106795 5.40560169470656 7.24397648791467 0.213439350692129 0.205561198039586 0.207844917617552 0.211832208453754 0.207156730932482 0.210406100561621 0.207869299810171 0.205701470011649 0.223699429332741 0.205488394015839 0.214342093615515 0.206315184382917 0.213557173191065 0.208062057153561 0.203770931223770 0.207157542666558 0.208568146109754 0.212891771385623 0.212142070513012 2 2|0 +|/ 8838978 8839765 8839525.9 8838797 8839997 + gene protein_coding_gene FALSE TRUE AT2G20490.1|AT2G20490.2 EDA27/NOP10 (embryo sac development arrest 27); RNA binding Identical to H/ACA ribonucleoprotein complex subunit 3-like protein [Arabidopsis Thaliana] (GB:Q93XX8;GB:Q9SIM0); similar to nucleolar RNA-binding Nop10p-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD21599.1); contains InterPro domain Nucleolar RNA-binding protein Nop10p; (InterPro:IPR007264) -0.487935817343317 -5.34255999335765 0.000245407260517384 1 6.00405701170137 13.3332168355694 -0.487935817343317 0.0694887307056907
AT1G02660_at 4.86936644563344 5.3737829183995 4.50353093902023 4.5256028600155 6.19825233938423 6.21260866034135 4.32043880382476 4.4175740568335 4.61759755851161 3.73394796015833 4.79193129245136 4.4482004331343 4.75202247095931 4.98704190110474 4.11662186093959 4.83142401040861 4.58417731589844 4.62715169339867 4.29989684602540 0.210350142484925 0.205201476198018 0.205201476198018 0.212410511076129 0.218555737683912 0.206804709103155 0.223944167166354 0.210452028693356 0.222232139747107 0.211152854467598 0.212243506277605 0.207560420855818 0.211774110817141 0.21818266731647 0.205201476198018 0.206622588574379 0.209717199501241 0.209956394275347 0.209878777905380 1 1 - 572191 572734 572445.909 571955 574981 - gene protein_coding_gene FALSE TRUE AT1G02660.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT3G62590.1); similar to Lipase, class 3 [Medicago truncatula] (GB:ABE90993.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.519941030452979 5.34046758315452 0.000246187196374709 1 6.00143063837805 9.48237904152423 0.519941030452979 0.0890121108005438
AT1G09530_at 4.74645433226424 4.79032158171627 4.78819113778958 4.62956518375115 5.44962042089333 5.15162246622203 4.56352578346544 4.61583291722926 5.24060774569878 5.15549527792914 5.16807124848624 5.32740166409776 6.09416622684518 5.72476030320396 5.88880608158192 5.53078971281024 6.33920171291834 5.94878111110971 4.99685036050698 0.206684025753037 0.198745387709925 0.194885863310346 0.202275039421819 0.198340241822534 0.207986135735974 0.194885863310346 0.200918096738086 0.212944174977966 0.201731139879281 0.198849478641823 0.19811334435541 0.198796299480893 0.209692256479570 0.195178438525536 0.203505584351428 0.211540274749555 0.196890545695600 0.196983960195998 1 1 + 3078385 3079225 3078860.273 3076584 3079541 + gene protein_coding_gene FALSE TRUE AT1G09530.1|AT1G09530.2 PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulator Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion.|Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork Identical to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH 8) (AtbHLH008) (BHLH8) [Arabidopsis Thaliana] (GB:O80536;GB:Q9SBC5); similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G28811.1); similar to PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5), transcription factor [Arabidopsis thaliana] (TAIR:AT2G20180.1); similar to Basic helix-loop-helix dimerisation re (GB:ABD33186.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.473739472374295 5.33943719770564 0.000246572234363000 1 6.0001370183985 10.2837575874214 0.473739472374295 0.0596035399918158
AT4G39820_at 6.6947287272329 7.19025579612464 7.68718647315645 7.44898235260885 6.71256927342808 6.58757915632027 6.12859921748494 6.12079555486728 5.81290717538623 5.41785046442179 6.32461944351989 6.46347430925865 5.66104529631274 5.84126652613538 6.23920528630016 6.43263860127263 6.01554532998612 6.07949203643413 5.67785725159295 0.231152151132014 0.229142576752017 0.241870015115924 0.233226611472055 0.237229060861690 0.242987465251521 0.231618869386647 0.236555545520431 0.229837633533699 0.244579543468838 0.229142576752017 0.229142576752017 0.238325403768380 0.236103833586117 0.229142576752017 0.231179856739200 0.239252381726577 0.23584382193103 0.234728369946261 4 4 - 18476698 18477244 18476927.545 18476001 18477937 - gene protein_coding_gene FALSE TRUE AT4G39820.1 binding similar to Os02g0550400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047094.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_419934.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.535720189901555 5.33942858290658 0.000246575456264864 1 6.00012620195364 12.7055199776293 0.535720189901555 0.0975837596166652
AT4G10310_at 0.714048058374448 1.45387601980533 3.15729623201958 3.14086244903754 2.38805597588403 2.4022980625155 2.45954018674728 2.01675213945132 0.7716485296723 0.69303959953461 0.4023232696022 0.388614512966911 1.36117387106548 1.08581073295083 0.249826874992270 2.01665852453492 2.02355082487451 0.273661547281097 0.902899458108761 0.22598719619831 0.221690133262837 0.229265609008808 0.231665885180041 0.221690133262837 0.226872522737238 0.223622044214640 0.232699161260022 0.236831612315268 0.23195686439624 0.233487541425763 0.224841993554140 0.223773599043213 0.231893176533230 0.232840377608202 0.221690133262837 0.226775301091470 0.229066610567479 0.221690133262837 4 4 + 6392925 6395621 6394219.364 6391980 6395805 + gene protein_coding_gene FALSE TRUE AT4G10310.1 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1); sodium ion transporter encodes a sodium transporter (HKT1) expressed in the phloem. Mutants over-accumulate sodium in shoot tissue and have reduced sodium in phloem sap and roots. Identical to Sodium transporter HKT1 (AtHKT1) (HKT1) [Arabidopsis Thaliana] (GB:Q84TI7;GB:O82614;GB:Q68KI5;GB:Q9M570;GB:Q9SV90); similar to potassium transporter [Thellun (GB:ABK30935.1); contains InterPro domain Cation transporter; (InterPro:IPR003445); contains InterPro domain Potassium transport protein, high-affinity; (InterPro:IPR004773); contains InterPro domain Delta endotoxin central region; (InterPro:IPR001178) 0.64854036805727 5.33899130238578 0.000246739056240418 1 5.99957715002618 3.09879033159042 0.64854036805727 0.149256971294959
AT2G27360_at 6.11812039775471 6.03661195861647 6.20784102450515 5.98972810387939 5.7315274405562 5.42787008954428 7.19226583919823 7.20865667994023 5.48887261689997 6.4947192756687 5.88162286653684 6.15579054044027 5.66056124602714 5.8587890346067 5.16651468692116 5.52013504711127 6.16631755486689 5.55289573768289 5.75065042436524 0.245448130032703 0.230354105477638 0.240333590445430 0.229363926613748 0.224763683602422 0.245974503962559 0.229581449704113 0.224837195958724 0.23470618906913 0.225589822912484 0.230929864788907 0.226784124736367 0.231857601175932 0.231575695701782 0.237931081477936 0.223563063737179 0.237145717213196 0.230706028040087 0.224884864525411 2 0|2 /|+ 11714396 11714910 11714682 11713276 11715143 + gene protein_coding_gene FALSE TRUE AT2G27360.1 lipase, putative similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28610.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.482878910313324 -5.3386746372565 0.000246857602270663 1 5.99917952195797 12.0674489142087 -0.482878910313324 0.066280911817506
AT1G60560_at 5.30625299898935 5.22693324443298 4.10376923001181 4.28697445537682 5.17291303355237 5.35079296633713 5.60841537456439 5.38534451785664 4.74976013979443 5.32502287461927 4.80802574381517 5.56731374005424 4.978685703148 5.13692265784687 4.38048424525818 5.14521548039063 4.66121085152872 3.93725624586665 5.29328302803254 0.269093483617423 0.265080326155979 0.264058459786247 0.266246159472019 0.263394986415761 0.273284281564627 0.266477740924263 0.266809790456689 0.263394986415761 0.268507963588664 0.272552400071549 0.263394986415761 0.269005842866225 0.26791025850753 0.263394986415761 0.263394986415761 0.270806161557797 0.267976851349523 0.272662029872855 1 1 - 22312482 22312946 22312736.364 22312214 22315015 - gene protein_coding_gene FALSE TRUE AT1G60560.1|AT1G60560.2 SWIM zinc finger family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G13970.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84431.1); similar to Os09g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062830.1); similar to Os07g0227700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059218.1); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527)|similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G13970.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84431.1); similar to Os09g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062830.1); similar to Os07g0227700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059218.1) -0.474461729984083 -5.33776170844544 0.000247199702812615 1 5.99803308010851 10.0299634847922 -0.474461729984083 0.0602612161096498
AT1G27600_at 4.61433722988665 3.96600937444532 4.71602397905311 4.11781147408248 4.88527901834621 4.54948743488668 3.66519271586856 3.92573409590475 3.98918316530033 4.1782498594582 5.4564198909039 4.7634506657886 5.22140413614003 5.26389590962743 5.43446922263675 4.76747330899544 4.54487677773860 4.29436772437003 4.12009292679657 0.202354276292889 0.202354276292889 0.205669507430645 0.207118062596167 0.208250251840957 0.206095123774095 0.202354276292889 0.207546000029845 0.209466247214508 0.203706546370175 0.207015349790003 0.202354276292889 0.202927350455779 0.215774623349080 0.206594586555144 0.206044947059203 0.212000641796790 0.204071376389841 0.206973240861489 1 1 - 9604078 9605154 9604454.818 9603165 9606088 - gene protein_coding_gene FALSE TRUE AT1G27600.1|AT1G27600.2 glycosyl transferase family 43 protein similar to IRX9 (IRREGULAR XYLEM 9), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G37090.1); similar to beta-1,3-glucuronosyltransferase [Lotus japonicus] (GB:CAI93173.1); contains InterPro domain Glycosyl transferase, family 43; (InterPro:IPR005027) 0.698392421619601 5.33732094327921 0.000247365050281201 1 5.99747952027011 8.83705275949762 0.698392421619601 0.169454452351839
AT1G18620_at 9.49886095392645 9.67579698048794 8.47801430137904 8.69127767969772 9.5907518107344 9.28436088792744 9.7236568396845 9.80126059064904 10.6686039154443 10.4919349426873 10.4730974421525 10.5372272706885 10.4413370003337 10.5021668646887 10.2467597833588 10.6519792729083 9.75785216991957 10.1673570549571 10.8418127563439 0.138354322184939 0.125961700673841 0.153610949646716 0.142859038384525 0.129964068018215 0.139464115882300 0.135501020207786 0.128533632692092 0.137212469637803 0.127220216235062 0.130492978618588 0.126433645704558 0.129466543356612 0.130134587302611 0.141203804575233 0.127164716552368 0.144456163273378 0.139725840609092 0.125629372033985 1 1 + 6413672 6414208 6413933 6410025 6414443 + gene protein_coding_gene FALSE TRUE AT1G18620.1|AT1G18620.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74160.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96645.1); similar to Os07g0109400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058723.1); similar to Os07g0603300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060212.1) -0.492010551017453 -5.33307689461169 0.000248963173603741 1 5.99214759998918 19.850333828328 -0.492010551017453 0.0727417253733044
AT3G49940_at 4.86020963421455 5.72245168432203 4.45084794311891 4.02819471659731 4.99237614096362 5.60470599470082 6.37506954836682 6.50945937429682 5.85326129840699 6.45762287268246 6.60082587287093 6.94243156253952 5.36316767052114 5.8828325898306 6.53941404829153 4.9373071454243 5.41068204057285 6.26927150442364 7.01695024489251 0.266076217308044 0.253356208100513 0.257138071393048 0.252167248825308 0.254431575832003 0.254970482808391 0.254576810500707 0.255100080437573 0.251383768240199 0.260288212211296 0.264263115448369 0.254437003001202 0.251383768240199 0.252304094045701 0.259340436966330 0.260471592645897 0.256448163788899 0.257316861559142 0.259124301364052 3 3 + 18525727 18526210 18525999.182 18525328 18526460 + gene protein_coding_gene FALSE TRUE AT3G49940.1 LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) Identical to LOB domain-containing protein 38 (LBD38) [Arabidopsis Thaliana] (GB:Q9SN23;GB:Q8LDW4); similar to LOB domain protein 37 / lateral organ boundaries domain protein 37 (LBD37) [Arabidopsis thaliana] (TAIR:AT5G67420.1); similar to Protein of unknown function DUF260 [Medicago truncatula] (GB:ABE82505.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.773568139569782 -5.33251156700985 0.000249176877246554 1 5.99143711763384 11.5358408927243 -0.773568139569782 0.198455718628701
AT1G23230_at 5.23287801475071 5.91601852035015 5.38956425745153 5.73678709987041 5.34998269414097 4.89671442335994 5.53603227984316 5.68785897121825 5.54427070020654 5.49783454682292 4.06527173390631 3.96576324641488 4.80158317309241 4.89394273387308 3.69269575643076 5.00340130953601 4.62548037927966 4.50439048655092 5.52915137698521 0.243944383968555 0.233281986787964 0.238038615395866 0.242826686952668 0.232662618543977 0.241397567000531 0.233551395291077 0.233644769349265 0.241776934137058 0.235233482480824 0.233041904583175 0.232662618543977 0.232662618543977 0.232957668583365 0.237325509253152 0.232662618543977 0.237678127826292 0.240948867615783 0.234186448571721 1 1|0 +|/ 8250803 8251673 8251254.3 8244470 8251730 + gene protein_coding_gene FALSE TRUE AT1G23230.1 similar to Os02g0732700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048029.1); similar to Mediator complex subunit 23 CG3695-PA [Drosophila melanogaster] (GB:NP_611735.1); contains domain SUBFAMILY NOT NAMED (PTHR12691:SF1); contains domain FAMILY NOT NAMED (PTHR12691) -0.664810466727121 -5.33184862867566 0.000249427727570474 1 5.99060388841229 10.4521386878183 -0.664810466727121 0.156300853435291
AT4G04320_at 8.63553633600061 9.02958052825969 9.22863560748397 9.24620016524529 9.3085745273412 9.00725604897774 8.67874773925844 8.54494901949043 7.4375130030638 7.98409598064285 8.33357061708882 8.3313220166232 8.3922886168764 8.0616178579778 8.01046652779575 8.356032189642 8.57708636954771 8.32095322051176 7.78570248335088 0.211735873564073 0.211735873564073 0.215366941343028 0.216553665750836 0.220887617265364 0.221063491246942 0.219579624921504 0.212591622454559 0.258632015434671 0.213651767908835 0.217965354425119 0.216484224458850 0.211735873564073 0.228273710173373 0.217566617954593 0.212964822414366 0.216043969712247 0.215997051388828 0.224875074955165 4 4|0 +|/ 2115460 2116150 2115800 2113402 2116691 + gene protein_coding_gene FALSE TRUE AT4G04320.1|AT4G04320.2 malonyl-CoA decarboxylase family protein similar to Os09g0394100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063091.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF98885.1); contains InterPro domain Malonyl-CoA decarboxylase; (InterPro:IPR007956) 0.518804934749256 5.3296968306476 0.000250243799155720 1 5.98789880591417 16.9767788295207 0.518804934749256 0.088963270928187
AT4G28210_at 5.39815691439755 5.88067475931256 5.43404417784605 5.23784546320653 5.12204333009952 5.10987974516907 6.15361216794729 6.20581942184598 4.80366102371121 5.56177072652109 4.88278613428865 5.49084852863842 4.65440829051936 4.4905316020851 5.06462471941187 4.66676922853083 5.22007065942936 4.40968782370828 5.29304887031558 0.229306667725584 0.227387761809156 0.233931072234828 0.226078657727667 0.227328685365755 0.241677110924393 0.228118687649980 0.223143489943004 0.249874310313144 0.229258857626915 0.221629475087377 0.221316652629118 0.238023678830421 0.225237939441044 0.245352150319343 0.22479026992234 0.23235248104179 0.246427592747902 0.230922027356063 4 4 + 13991341 13991875 13991577.182 13990623 13992084 + gene protein_coding_gene FALSE TRUE AT4G28210.1 EMB1923 (EMBRYO DEFECTIVE 1923) -0.521570151825849 -5.32750094877037 0.000251079512667733 1 5.98513744397458 10.6074892042326 -0.521570151825849 0.0906170398677157
AT3G08860_at 3.75361747102003 3.70353192357084 4.68484709144544 4.63336949569112 3.47110455349725 4.11639469595522 6.56372157036592 6.58899864864546 2.00267648647903 2.8009848297168 1.37760317442059 1.10293545859463 1.76914328458369 2.09759731614128 1.33569101405607 2.04214039270614 3.08667000358658 2.05018825007232 1.37628572691341 0.294757105992069 0.303103811815613 0.298841610364291 0.304409340805721 0.296514804371706 0.294817020050249 0.310408454409655 0.312223573270107 0.298158895535562 0.289638887320120 0.297140963539042 0.293934721245782 0.293954618346015 0.293164127085691 0.310813818377472 0.289638887320120 0.301019337512895 0.291424744097917 0.291970527382634 3 3|0 -|/ 2696765 2697678 2697385.4 2696565 2699164 - gene protein_coding_gene FALSE TRUE AT3G08860.1 alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative Identical to Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 3) [Arabidopsis Thaliana] (GB:Q9SR86); similar to AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3), alanine-glyoxylate transaminase [Arabidopsis thaliana] (TAIR:AT2G38400.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III [Medicago truncatula] (GB:ABE94503.1); similar to Os05g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055831.1); similar to Os03g0338000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050053.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) -0.56413734009311 -5.32724180687173 0.000251178332754704 1 5.98481151091959 6.64831241101053 -0.56413734009311 0.112445163035940
AT3G60245_at 11.7494606702582 11.7969902701384 11.3764095470570 11.3253185264073 11.2222822218088 10.9294177160279 11.9745781686535 11.9971238423864 11.6940918195247 11.7887333979942 11.5075479908104 11.9734676511304 11.2830787574908 11.2985195174049 12.0413593716484 11.1520354572843 11.0145084678348 11.2074639039848 11.6034458988745 0.06701122814601 0.068424869523133 0.0694206450606772 0.0709172419515177 0.0697164217443649 0.0693367963851467 0.0697859490019201 0.0687561131657025 0.0679875566504748 0.0668184177119591 0.071970337860935 0.0669392565127281 0.0665419612200803 0.07101977177868 0.07089482758119 0.066502655049452 0.0721450521536347 0.0680192837327506 0.066502655049452 3 3|0 +|/ 22279998 22280697 22280432.444 22279721 22280981 + gene protein_coding_gene FALSE TRUE AT3G60245.1 60S ribosomal protein L37a (RPL37aC) Identical to 60S ribosomal protein L37a-2 (RPL37AC) [Arabidopsis Thaliana] (GB:Q8RXU5;GB:Q9LY39); similar to 60S ribosomal protein L37a (RPL37aB) [Arabidopsis thaliana] (TAIR:AT3G10950.1); similar to 60S ribosomal protein L37a (GB:P43209); contains InterPro domain Ribosomal L37ae protein; (InterPro:IPR002674) -0.463428650399856 -5.32657374318921 0.000251433279850189 1 5.98397120487167 23.1115332929237 -0.463428650399856 0.0522462552528323
AT1G51440_at 6.46064670197836 6.51813319489617 7.82485823616775 8.18738787455582 8.22403601813351 8.15187176873454 8.08861303770905 8.4372015832201 6.45465972648287 7.72540469472326 7.63515167180374 7.14057925661429 7.85044018786845 7.57526817023202 6.80493952963793 7.69014832250269 7.88265230175154 7.10424773379493 7.25806427385003 0.185195151307556 0.194204324234516 0.185168675826159 0.185687078499070 0.186918447786110 0.192544921247292 0.180076854088155 0.191123366297007 0.192072182845932 0.185307821901921 0.186213182937393 0.182437148435915 0.181355101465315 0.188449695513765 0.183068298877742 0.185837051003464 0.188721649531082 0.180834302689327 0.183795097193632 1 1 + 19075643 19076143 19075928.909 19074585 19076362 + gene protein_coding_gene FALSE TRUE AT1G51440.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G30550.2); similar to Os01g0651800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043734.1); similar to Lipase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96672.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.517637671685316 5.32643900998522 0.000251484730145387 1 5.98380172456324 15.0398291994883 0.517637671685316 0.0884873169187196
AT4G28260_at 8.51859915190446 8.69781112067041 7.81683233793885 7.88101096800051 9.00184673723082 8.50623211787214 8.51643995464953 8.25855103669071 9.14670498822801 8.89771804324423 8.13625141964652 8.35625905902971 8.10725703984988 8.4259179915207 7.82534164979338 8.41623500223108 8.0033937502085 8.18126108773428 9.17022663915855 0.135190371587479 0.133602714231604 0.137544418831060 0.135675778493953 0.135599054880761 0.135698845405136 0.138780748300466 0.133605491971993 0.140219905341861 0.131834912758178 0.136689992731245 0.129678035506188 0.142288818740296 0.13656851008801 0.161836725242943 0.128610459086496 0.144282337175496 0.141376829699441 0.134765619111886 4 4 + 14006121 14006732 14006349.455 14004491 14006976 + gene protein_coding_gene FALSE TRUE AT4G28260.1|AT4G28260.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47837.2) -0.543215020463349 -5.32629960937231 0.000251537974539524 1 5.98362636969728 17.0261851857257 -0.543215020463349 0.102142775242986
AT1G14700_at 4.04782292767702 4.4142104029612 3.02458515993727 3.23940504116307 3.64393476208742 3.50433529700681 5.36990381974404 5.71759445818371 4.60631708975164 6.61212156941875 6.2208998074824 7.52040223825289 6.26226254751608 6.27318935807284 7.00625547615023 6.6041296417584 5.36344875810247 6.40212167769528 6.7593180143432 0.262837886426627 0.270070284297268 0.273778959011888 0.269558413642561 0.263379676471082 0.272738218079917 0.260666148968936 0.271969100782034 0.277278156472174 0.262573928183146 0.268168046191006 0.266445962394806 0.266688805359042 0.270070213370118 0.269957598693090 0.264256528234952 0.281564529543872 0.28265990322884 0.266884296312612 1 1|0 +|/ 5059924 5060958 5060519.3 5058675 5061131 + gene protein_coding_gene FALSE TRUE AT1G14700.1|AT1G14700.2 ATPAP3/PAP3 (purple acid phosphatase 3); acid phosphatase/ protein serine/threonine phosphatase|ATPAP3/PAP3 (purple acid phosphatase 3) similar to PAP8 (PURPLE ACID PHOSPHATASE PRECURSOR), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G01890.1); similar to purple acid phosphatase 1 [Solanum tuberosum] (GB:AAT37529.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.535157353400944 -5.32569308601809 0.000251769776925400 1 5.98286337085846 10.3448111065784 -0.535157353400944 0.0980113164760592
AT2G02810_at 8.26703275325676 8.42117931291624 8.43701413639326 8.6981578473743 7.28346548435805 7.44769285400958 3.95812225168065 4.4125409570166 5.38306359549493 4.32779550322435 3.49552122445377 4.13611478361922 3.91490734207068 4.08890580387966 4.41231088909167 3.99600416483469 4.12116264935565 3.96851868236384 4.22743486059928 0.240270931776104 0.236536243021626 0.240133753002678 0.235533318667505 0.238911485985072 0.238670505445888 0.242694517153887 0.242390214530609 0.255139992144668 0.244236126596158 0.246272395828671 0.236056855952370 0.234647237605505 0.234647237605505 0.240729658369132 0.234647237605505 0.247782206880183 0.236189523755455 0.24607851612263 2 2|0 +|/ 802531 803195 802878.4 801529 803435 + gene protein_coding_gene FALSE TRUE AT2G02810.1 ATUTR1/UTR1 (UDP-GALACTOSE TRANSPORTER 1); UDP-galactose transporter/ UDP-glucose transporter/ pyrimidine nucleotide sugar transporter Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER. similar to ATUTR3/UTR3 (UDP-GALACTOSE TRANSPORTER 3), pyrimidine nucleotide sugar transporter [Arabidopsis thaliana] (TAIR:AT1G14360.1); similar to hypothetical protein MtrDRAFT_AC149601g16v1 [Medicago truncatula] (GB:ABD32994.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.53622323391768 5.32279547821593 0.000252880324808096 1 5.97921730112166 11.4470400390748 0.53622323391768 0.0987206993176905
AT1G56210_at 3.10344872998092 3.10338252306302 2.12335049747096 2.41839063783283 2.95906994937948 2.77922031812865 3.28093554727318 3.19678286160731 3.62886959195897 3.52701348545815 3.1647002204478 3.81182471123246 3.56092270677282 3.08659772655968 3.49805999210517 3.43827859911786 2.61720474359723 3.38590219986296 3.85028534657566 0.185322701061365 0.198651069332126 0.198759658635324 0.185061027947097 0.191812972146453 0.191607237661845 0.184364243550552 0.202366597067901 0.190067919778189 0.184342768174730 0.182672934590002 0.182672934590002 0.188873324548254 0.186003836383758 0.183664519479810 0.187495012917483 0.201295781868275 0.184887076530049 0.185788532764496 1 1 + 21040102 21040619 21040427.364 21039283 21040876 + gene protein_coding_gene FALSE TRUE AT1G56210.1 copper chaperone (CCH)-related similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G27690.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE80600.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.474708005156861 -5.32122081927992 0.000253486014313283 1 5.9772352677089 6.36515221832184 -0.474708005156861 0.0615442953519303
AT4G12720_at 10.5049285183246 10.5800879836440 11.4018421665017 11.4853984223387 10.5296401182029 10.2013932166176 9.31290410126104 9.2649860622685 9.8771047043684 9.3800297550069 9.49841297186767 9.20520477859187 9.19999822298935 9.46818509333981 9.42332784570608 9.59822076906416 9.3520979487331 9.23555321105103 8.98783151058025 0.120587005649698 0.121659001326377 0.125056422377609 0.124730758821636 0.123637985868621 0.129229001628736 0.119617328949049 0.120661536988271 0.127071087556729 0.120760996162363 0.125013709180983 0.122417698220064 0.120380149911709 0.120423835151869 0.120101854092649 0.123276598994146 0.126312188090344 0.126226677574251 0.123137196673821 4 4 + 7488211 7489518 7488983.182 7487336 7490074 + gene protein_coding_gene FALSE TRUE AT4G12720.1|AT4G12720.2|AT4G12720.3 AtNUDT7 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 7); hydrolase Negatively regulates EDS1-conditioned plant defense and programmed cell death. Identical to Nudix hydrolase 7 (EC 3.6.1.-) (AtNUDT7) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (NUDT7) [Arabidopsis Thaliana] (GB:Q9SU14;GB:Q8LEK5); similar to ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT2G04450.1); similar to Nudix hydrolase 5 (AtNUDT5) (GB:Q9SJC6); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) 0.473239131528376 5.31876618204785 0.000254433259307132 1 5.97414470847196 19.8039544545547 0.473239131528376 0.0606118271716461
AT3G16270_at 6.95540722530672 7.10519633296133 6.9395239512389 7.27394469780416 6.95452588681453 6.78759477880918 6.80107531758032 6.8911464550757 5.4435174421469 5.96939977946652 6.70102174414524 6.94516691990014 7.10732847245429 6.68370179650794 6.46352441135201 6.95122078816909 6.70152129863822 6.75133445539522 6.17205587185825 0.176682890307307 0.177948868584002 0.187586305859333 0.185104569137123 0.181304255207104 0.195812577555452 0.171330403188593 0.172884084735095 0.215344897044851 0.183862297469795 0.176965982258648 0.183249626868707 0.175745743145877 0.184873161526555 0.177040023494367 0.179114014680172 0.189691449493845 0.184519844847622 0.184004224768176 3 3 + 5515831 5516513 5516056.818 5513279 5516938 + gene protein_coding_gene FALSE TRUE AT3G16270.1 binding similar to Epsin, N-terminal; ENTH/VHS [Medicago truncatula] (GB:ABE85555.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.488567891966029 5.31793047913094 0.000254756614089393 1 5.97309225245606 13.2884319225209 0.488567891966029 0.0714053021828153
AT4G26610_at 5.8057082378393 6.30463708134231 5.76636940383664 5.6074117408597 6.09034727120101 6.29932145680178 6.77221206864279 6.72051639790737 6.78098177162538 6.67255874321245 6.7466956192837 6.07607220898167 6.64161592319159 6.89505918170144 5.75802411394186 6.22279041421631 5.53949575466486 5.98517028311814 7.07069397698462 0.216127697953004 0.205411984093578 0.20562078634223 0.215105970929267 0.210380442678935 0.214016171949299 0.205411984093578 0.212420093194183 0.219722969852891 0.211420625210175 0.208734629777187 0.210946526160725 0.213303254388935 0.214942153086512 0.209066250481117 0.205411984093578 0.228084495211342 0.217176044089186 0.211346181695036 4 4 + 13426616 13427129 13426886.818 13424555 13427325 + gene protein_coding_gene FALSE TRUE AT4G26610.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G55910.1); similar to stpk1 protein kinase [Solanum tuberosum] (GB:CAA62476.1); similar to protein kinase (GB:AAA33509.1); similar to G11A protein (GB:AAA33905.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.534101019072431 -5.31582991516373 0.000255571303736706 1 5.97044631725788 12.7080789246347 -0.534101019072431 0.0979770925390568
AT1G08460_at 8.786318812388 8.99570171515855 9.39742358662093 9.3795071247251 9.13642878041424 9.47683789687278 8.11786451460756 8.4421750070156 8.41136526368862 8.40896011989023 8.71502944286752 8.23114605559813 8.68695265806003 8.74579007327945 8.50086892129784 8.75209517322106 8.78075634705249 8.73791877418028 8.2910838509739 0.130403291860755 0.141633199285603 0.136478193894589 0.140506468090917 0.138170842301551 0.147176646756161 0.131810911258655 0.147479161807724 0.150145036749813 0.143137682007676 0.135157536986306 0.134484299316284 0.136139649625144 0.137229266657236 0.136601103242910 0.130403291860755 0.141543922201838 0.132181174419178 0.144482001156336 1 1|0 +|/ 2673268 2674432 2673859.4 2672454 2674625 + gene protein_coding_gene FALSE TRUE AT1G08460.1 HDA08 (histone deacetylase 8); histone deacetylase similar to HDA15 (histone deacetylase 15), histone deacetylase [Arabidopsis thaliana] (TAIR:AT3G18520.2); similar to Histone deacetylase superfamily [Medicago truncatula] (GB:ABD32780.1); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286) 0.517692135354757 5.31535214781904 0.000255756988373767 1 5.96984439573838 17.4736768924981 0.517692135354757 0.0891219525072925
AT1G75770_at 2.46094698277231 2.74924887964726 2.24837077631562 2.04056657761408 2.53985696170591 2.20225439267542 3.23454388437465 3.03352104590474 2.36789049823991 2.49807190912412 1.97469035225640 1.98909330582498 2.34301133105889 2.19022887453479 1.29518425437181 1.57266260685516 2.56794550918023 2.29684519504487 2.51845242684715 0.240377164505531 0.240377164505531 0.241040349946880 0.248409135412792 0.240377164505531 0.249014372985743 0.242605533174230 0.243203652724365 0.250723738360405 0.244323285129359 0.244180926679564 0.243463916896535 0.242980942978727 0.240387035773734 0.244400697519991 0.242999368443141 0.246183994706850 0.248544150568572 0.244979702402919 1 1|0 +|/ 28453795 28454600 28454167.4 28453651 28454769 + gene protein_coding_gene FALSE TRUE AT1G75770.1 unknown protein -0.522283476929908 -5.31499745376567 0.00025589493310685 1 5.96939750312256 4.80875333264856 -0.522283476929908 0.0916840677163031
AT1G32470_at 11.5799768630336 11.3654942396573 10.5608124131786 10.3963950808162 11.0447079266453 10.8805798171447 12.2668569015509 12.0702667873291 12.0155751182825 12.2329578868547 12.2984901060540 12.6007717935435 12.0160422205337 12.1138228318779 12.6304052219345 12.3690235690047 11.8161699647018 12.1826549625593 12.0796507300094 0.062509978536348 0.0602964382055083 0.0638132885166846 0.0620588507910839 0.0605076107456829 0.0633940868161079 0.0624342771527135 0.0620878971847472 0.0644476433898201 0.0618272462074551 0.0628476735629538 0.0615464451015897 0.061866709221788 0.067796841680253 0.0609541943632328 0.0609760979689415 0.0650669425590426 0.0618593534126653 0.0616960346283525 1 1|0 -|/ 11739509 11740196 11739828.375 11739284 11740341 - gene protein_coding_gene FALSE TRUE AT1G32470.1 glycine cleavage system H protein, mitochondrial, putative Identical to Probable glycine cleavage system H protein 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LQL0); similar to GDCH (Glycine decarboxylase complex H) [Arabidopsis thaliana] (TAIR:AT2G35370.1); similar to Glycine cleavage system H protein, mitochondrial precursor (GB:P16048); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Glycine cleavage H-protein; (InterPro:IPR002930); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.477998441526272 -5.31365385693682 0.000256418190549066 1 5.96770444837989 23.4520448347486 -0.477998441526272 0.0644315687714232
AT1G22070_at 9.71125399549796 9.61561849706434 10.0990525754103 9.95840006832262 9.8626775695275 9.77849844672663 9.11518593139613 8.8163772042211 8.5948326286538 8.33947425681544 8.57659415634538 8.58882855713454 8.72806370038199 8.66494018134616 8.29034112593926 8.74456843793976 8.9706550098195 8.55268209614445 7.97390074002626 0.120610368084722 0.125043610139627 0.124314469546811 0.127465789457351 0.125279344526809 0.124287301224046 0.122314169475865 0.131906703419028 0.133898881478519 0.131320391879738 0.123089610957918 0.118039759019895 0.122893421601793 0.131421813698888 0.128313914835157 0.121894605463116 0.123844342801849 0.125704895613902 0.133922112273667 1 1 + 7791018 7791741 7791333.182 7789337 7792103 + gene protein_coding_gene FALSE TRUE AT1G22070.1 TGA3 (TGA1a-related gene 3); DNA binding / calmodulin binding / transcription factor Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. Identical to Transcription factor TGA3 (AtbZIP22) (TGA3) [Arabidopsis Thaliana] (GB:Q39234;GB:Q8LBG4;GB:Q9LM52); similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G77920.1); similar to TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] (GB:AAK84888.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.473448270459039 5.31141525954644 0.000257292525963134 1 5.96488288839659 18.0907930526691 0.473448270459039 0.0612579427102409
AT3G45300_at 8.10787382358099 8.13531557075194 8.6556052577701 8.67898986213308 9.25116061008862 8.779142618755 8.03297552715287 7.61062987181519 6.55773744233936 6.70785277446454 6.62126448217245 6.2924414647665 7.00176316504026 6.64824418494846 5.87361781878041 7.38442636766863 8.01400725223324 7.02909856087209 6.57580209144844 0.217555429769907 0.218786304580669 0.221463675936744 0.222278331298946 0.220767066201852 0.227591868003694 0.221203635886995 0.230233094581803 0.231340366625256 0.218392490102382 0.221483712439401 0.223145227376540 0.234256150291294 0.235013067797313 0.217893299719953 0.221070654433766 0.227247210147873 0.218670876881646 0.230543274622176 3 0|3 /|- 16632654 16633532 16633237 16631188 16636033 - gene protein_coding_gene FALSE TRUE AT3G45300.1 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. Identical to Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD) (IVD) [Arabidopsis Thaliana] (GB:Q9SWG0;GB:Q8W4G7;GB:Q9XFT2); similar to ACX4 (ACYL-COA OXIDASE 4), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G51840.1); similar to isovaleryl-CoA dehydrogenase [Beta vulgaris] (GB:ABH85388.1); similar to Isovaleryl-CoA Dehydrogenase; auxin binding protein (ABP44) [Pisum sativum] (GB:CAB55554.1); similar to Acyl-CoA dehydrogenase [Medicago truncatula] (GB:ABE89542.1); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase, N-terminal; (InterPro:IPR006092); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase; (InterPro:IPR006089); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type 1; (InterPro:IPR006090); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.556918182418798 5.31072815087669 0.000257561526290716 1 5.96401666566882 15.1424143168282 0.556918182418798 0.109787701718143
AT3G11880_at 7.370722548632 7.67269248325925 8.17908236585923 8.08666504030729 7.92719951583849 7.50630493461544 7.00419665340211 7.22266162731355 6.23075552257394 6.02869264274075 6.69567497526193 6.18406925913318 6.68449187991923 6.5243454646758 6.07786431601605 6.82805805631719 6.51397121259807 6.548212087571 5.87529174282062 0.239818480454053 0.236631623759876 0.242944169404872 0.233226612874984 0.236668620317858 0.260944412682748 0.236082174319545 0.237501205452172 0.250407412873111 0.245098308826746 0.246759201022984 0.236737521550522 0.235004164210690 0.243704722206770 0.243500951583732 0.233801488403276 0.246777644765349 0.244265106388105 0.249553917061556 3 3 + 3752843 3753696 3753379.273 3751666 3754066 + gene protein_coding_gene FALSE TRUE AT3G11880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70770.1); similar to Os01g0128400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041912.1); similar to hypothetical protein [Platanus x acerifolia] (GB:CAL07978.1); contains domain FAMILY NOT NAMED (PTHR13448); contains domain gb def: F26K24.17 protein (PTHR13448:SF1) 0.534708619864086 5.31011776875894 0.000257800738872629 1 5.96324709902972 13.8971902507276 0.534708619864086 0.098596517899805
AT1G05320_at 8.16271315516598 8.6589027365682 6.7220251655317 7.13229109990275 8.35756246858563 8.01552047595962 8.37606277817828 8.24284196345064 7.59582904169056 7.99577291300012 7.54719388592038 8.06467256043655 7.30124060346813 7.8199373432005 7.13004842982626 7.46740301797863 7.55099205826462 7.06532533751177 8.05540499113081 0.217704579649088 0.213004610177310 0.225213482103022 0.218804545417247 0.212589328206694 0.236242287881483 0.220186901282259 0.212589328206694 0.226610277697516 0.231526148987954 0.240008439788229 0.212589328206694 0.230100693105885 0.223507512207858 0.240492766061284 0.220131582381438 0.223586755701077 0.229380923448531 0.234874922402851 1 1 + 1556994 1557690 1557413.25 1553602 1557732 + gene protein_coding_gene FALSE TRUE AT1G05320.1|AT1G05320.2|AT1G05320.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32240.1); similar to unnamed protein product [Candida glabrata] (GB:XP_445454.1); similar to OSIGBa0126B18.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66915.1); similar to OSJNBa0008M17.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE04334.2); contains domain MYOSIN HEAVY CHAIN-RELATED (PTHR23160) -0.596132174938579 -5.30803075439985 0.000258620436192595 1 5.96061529464769 15.6463336320094 -0.596132174938579 0.128254727004626
AT1G65520_at 4.79085052944735 4.96123225988693 5.24543203158839 5.35582181404161 5.53719870276675 4.93264155715995 3.78906796042336 4.20488049766985 4.34276586325405 3.58043237623191 4.10635494819178 4.05163246395807 4.46162463979308 4.35768448463266 4.24685828013725 4.44171189742109 4.57499591996299 4.511098716602 3.97928155073502 0.235702548723212 0.232739292192939 0.225461686335884 0.235242176564339 0.238063377594118 0.226577464464161 0.224296008322956 0.224225991665497 0.231295769312216 0.234451445408890 0.225991067423955 0.227331354465094 0.221638477746209 0.220653871963584 0.225357380593319 0.222618192813741 0.235770776967150 0.230088364629217 0.225040008062807 1 1 - 24364981 24365397 24365198.545 24364695 24365656 - gene protein_coding_gene FALSE TRUE AT1G65520.1 enoyl-CoA hydratase/isomerase family protein similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.603883809981337 5.30723274195405 0.000258934594913223 1 5.95960876313194 9.0078848852452 0.603883809981337 0.131749647528709
AT3G52400_at 7.92536080393151 8.18590567951244 7.76939209775026 7.8128997215253 7.2287431514126 7.165313924466 3.28660809512099 4.48632698829543 6.22215195921938 5.12486740845459 5.78036724880514 6.05184854192765 5.57987152785534 6.40011665510561 5.09785199439369 5.2024258154451 5.76859317337638 4.33560174583369 4.95145333990932 0.239255677256316 0.235383415804362 0.225540417548428 0.226104088633804 0.224249946115766 0.232889899508043 0.246473020178585 0.23754332479023 0.224249946115766 0.224249946115766 0.228071363508356 0.229178023593825 0.226159430530407 0.238729090134976 0.229905230687132 0.230705619831830 0.230260676860753 0.238223592198087 0.228573349123107 3 3|0 -|/ 19436816 19437487 19437096.5 19436612 19438119 - gene protein_coding_gene FALSE TRUE AT3G52400.1 SYP122 (syntaxin 122); t-SNARE syntaxin protein Identical to Syntaxin-122 (AtSYP122) (Synt4) (SYP122) [Arabidopsis Thaliana] (GB:Q9SVC2;GB:Q9SUJ2); similar to SYP121 (syntaxin 121), t-SNARE [Arabidopsis thaliana] (TAIR:AT3G11820.1); similar to syntaxin-related protein Nt-syr1 [Nicotiana tabacum] (GB:AAD11808.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.808648592027587 5.30626255205933 0.000259317081537573 1 5.95838490992104 12.2125232196038 0.808648592027587 0.212873080598920
AT3G58710_at 3.69001272628580 3.76507472356415 3.54191689944301 3.68115045627912 5.04305743134714 4.75280354533428 2.59769111328786 2.73359370270106 3.20229343766495 3.21760048231643 3.32369585869553 3.13148938203759 3.05839708391606 3.26075600545122 2.44231486653150 3.21678931175708 3.2694647144158 3.03201162161818 3.18846260112231 0.245088776578275 0.245297341140439 0.249411555530469 0.255539637291324 0.254159342534248 0.276438049597751 0.252094391109602 0.243526089391323 0.253756755828522 0.250576678392448 0.241978292900801 0.241978292900801 0.242107455476741 0.250467641952739 0.262360904252782 0.241978292900801 0.242320455132307 0.243197966975957 0.246016585381259 3 3 + 21726502 21727714 21727413.636 21725984 21727893 + gene protein_coding_gene FALSE TRUE AT3G58710.1|AT3G58710.2 WRKY69 (WRKY DNA-binding protein 69); transcription factor member of WRKY Transcription Factor; Group II-e Identical to Probable WRKY transcription factor 69 (WRKY DNA-binding protein 69) (WRKY69) [Arabidopsis Thaliana] (GB:Q93WV5;GB:Q8LGJ7;GB:Q9LXT0); similar to WRKY65 (WRKY DNA-binding protein 65), transcription factor [Arabidopsis thaliana] (TAIR:AT1G29280.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABE80756.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.473609182579736 5.30427981940518 0.000260100618309364 1 5.95588324945763 6.87298775607402 0.473609182579736 0.0618503079478019
AT2G40475_at 7.1641645744149 7.05569411943376 5.66684763128287 5.76596263598568 6.49192005360978 6.25322061065763 7.9878551163949 8.68247658718603 7.10431224023754 7.47075769001638 7.38863274624434 8.18270947177432 7.7973454342648 7.28638612406578 8.2634006140852 7.46820434028198 7.01413336194694 7.31897800975218 6.75125634087468 0.273958977588017 0.277532966144513 0.292488353357389 0.287276593641360 0.269769008625026 0.276134755092886 0.26025101323359 0.269170542584719 0.278382697650851 0.261018770607069 0.262870908723468 0.262523660754819 0.263259575027194 0.277511635232443 0.265198667115304 0.272071804316188 0.279215947986446 0.27027048328275 0.266426238784816 2 2 - 16914327 16914797 16914627.455 16913989 16915206 - gene protein_coding_gene FALSE TRUE AT2G40475.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01790.1); similar to Os01g0166500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042116.1); similar to hypothetical protein MtrDRAFT_AC135801g20v1 [Medicago truncatula] (GB:ABE82186.1); similar to Os05g0335500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055233.1) -0.5984307636905 -5.30125984222725 0.000261298886000796 1 5.95207151144986 14.2328922593764 -0.5984307636905 0.129625456126381
AT3G06980_at 9.11110533084256 9.07248177366446 8.2412332468788 8.2399882545972 8.87301147290264 8.68722051286798 9.38823287932416 9.23491260675172 8.82389802990789 9.36966962173465 8.5175322882301 9.34892210428213 8.93409091682754 8.76831891900469 9.59104425735605 8.88271574953708 8.75840451763326 8.68444570339386 9.24238514767362 0.120499211528740 0.119759465296925 0.124507837356473 0.122785839949393 0.119954607628556 0.123065561923965 0.123472379398973 0.125940348408387 0.140446184862984 0.116300876224328 0.122094106293352 0.119171349414555 0.115613833501075 0.120880214463367 0.119703882586928 0.124306825949862 0.125089524673992 0.127851321264 0.119868269023498 3 3 + 2203759 2204637 2204306.909 2201473 2204839 + gene protein_coding_gene FALSE TRUE AT3G06980.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 50 (EC 3.6.1.-) (RH50) [Arabidopsis Thaliana] (GB:Q8GUG7;GB:Q9M901); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G09730.1); similar to unnamed protein product [Homo sapiens] (GB:BAD18438.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.450476534286516 -5.30106536099844 0.000261376252883109 1 5.9518259858678 17.8965242131313 -0.450476534286516 0.0422192082646095
AT2G27310_at 4.06015956418062 3.99488516247599 4.69281860932272 4.68141556239016 5.04312971145489 4.08855857912426 3.46440554071994 3.06130370850386 3.32662566312610 3.40017748094725 3.65107671679866 3.54919938985762 3.68064127440431 3.5707603308445 3.3609912896929 3.90907632726339 3.76769420731192 3.83240858804943 2.89563273351854 0.250782200039750 0.258561755312849 0.259809968478012 0.258280375965338 0.26054730251438 0.257354176061718 0.250327114740204 0.24789728079551 0.255452790696671 0.247193270592971 0.255857607705036 0.246608741715372 0.252389171854489 0.244730586946149 0.251940651897868 0.244730586946149 0.248141850175610 0.253279284818740 0.250162394542077 2 2 - 11691054 11691607 11691420.273 11690940 11692045 - gene protein_coding_gene FALSE TRUE AT2G27310.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G36090.1); similar to Os11g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065788.1); similar to F-box protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD27806.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.719522255633394 5.29936543702656 0.000262053538255350 1 5.94967960251773 7.57218937546746 0.719522255633394 0.179684409207767
AT2G31160_at 1.8006992790723 2.17743801896818 2.40612523682943 2.94592910982957 3.07485706732344 2.26509812870454 1.95317536591742 2.48220386140792 0.96079440267739 1.74833470187854 2.76812210442228 2.07572932929795 2.66209004918076 2.95065756024394 1.84473730298707 2.42290575144778 3.27832953704475 2.97522667510827 2.18959206195832 0.238643557289795 0.233646260697669 0.235010620957731 0.244513824721754 0.238198571198395 0.24730045404236 0.235553473465389 0.236553144263531 0.244880308852108 0.240914622408856 0.239468491106509 0.238060657036518 0.233646260697669 0.241158517187797 0.246428777324395 0.235050600357294 0.246142209787384 0.233646260697669 0.243241697732660 2 2 + 13285087 13285594 13285355.636 13284888 13285822 + gene protein_coding_gene FALSE TRUE AT2G31160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23290.2); similar to Ribulose bisphosphate carboxylase, large chain [Medicago truncatula] (GB:ABE90860.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) 0.779470493771068 5.29915023347887 0.000262139412604081 1 5.94940784185904 4.51575668061728 0.779470493771068 0.202474029663902
AT4G12490_at 8.971200923914 9.03837413798484 5.86950328892149 6.6252006590469 6.20822284857687 7.15698808521893 1.24863090972170 1.13040026879468 1.84856296414649 9.56467530158207 1.47399622361817 1.02612908729368 1.12867131060951 1.08874611167028 1.01708550413205 0.83310041607386 1.83997065161483 1.48532752283119 1.21840755048452 0.268702825615850 0.263080800891454 0.278230169055507 0.290269563728912 0.277184034487771 0.280540152494396 0.262911472646579 0.262911472646579 0.262911472646579 0.262911472646579 0.262911472646579 0.265868224386689 0.267348363879896 0.265911680449177 0.271470447133354 0.262911472646579 0.262911472646579 0.269106931261674 0.263588069384218 4 4 - 7409922 7410293 7410061.091 7409618 7410403 - gene protein_coding_gene FALSE TRUE AT4G12490.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12500.1); similar to HyPRP [Fragaria x ananassa] (GB:AAD01800.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.803046545793335 -5.29897438641919 0.000262209604400449 1 5.94918577467158 8.50465361971483 -0.803046545793335 0.211220623068961
AT4G18960_at 1.40009333530508 1.40507776593759 1.34022439915412 1.33951404521286 1.18216891444575 1.75817394980719 1.75758618869894 2.38007515728298 2.09925063564002 2.69949655918586 1.30924740996828 1.14019032313552 1.44811824228824 1.16780489112394 1.51504780674078 1.50763606250209 1.23826822504834 1.10187120782870 1.94527442660220 0.192139265495902 0.205002272787300 0.192447147206090 0.197037165538081 0.198644727282270 0.204510210831397 0.195034628171631 0.200354743538059 0.196422654380879 0.207956750871906 0.191595653300922 0.199091966003074 0.202391703551033 0.200598522133461 0.196551956415813 0.197650325186284 0.206838794502552 0.199668676636067 0.201964873131502 4 4 + 10384090 10388108 10387102 10382867 10388550 + gene protein_coding_gene FALSE TRUE AT4G18960.1 AG (AGAMOUS); transcription factor Floral homeotic gene encoding a MADS domain transcription factor. Specifies floral meristem and carpel and stamen identity. Binds CArG box sequences. It is the only C function gene. It interacts genetically with the other homeotic genes to specify the floral organs. Identical to Floral homeotic protein AGAMOUS (AG) [Arabidopsis Thaliana] (GB:P17839;GB:O82732); similar to SHP1 (SHATTERPROOF 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G58780.1); similar to Floral homeotic protein AGAMOUS (GB:P17839); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.637585985357186 -5.29761275876313 0.000262753792715261 1 5.94746606434865 3.34612933359165 -0.637585985357186 0.146770318707134
AT3G03640_at 7.7606561464216 8.25905271884032 7.09729185649544 7.95199970404466 6.0013289295807 5.72829036130362 8.81332564328723 8.98493187760394 5.11595096940709 5.95786747311985 5.48743084678724 6.33550345515445 5.8875801360182 6.03009508532182 5.61930711301099 5.84252065230064 4.98215302128407 5.7557961001693 5.19342826584353 0.249790673351527 0.255452231067006 0.248678845936571 0.256118944633947 0.260811341079003 0.258574604103281 0.261364051937777 0.259778261393626 0.262714463354409 0.253421013432279 0.250162141047068 0.248678845936571 0.255605132694047 0.258374665643795 0.250766051379975 0.248678845936571 0.259439099005645 0.254721327061544 0.266895619659739 3 3|0 +|/ 883100 883982 883681.375 881013 884164 + gene protein_coding_gene FALSE TRUE AT3G03640.1 GLUC (Beta-glucosidase homolog); hydrolase, hydrolyzing O-glycosyl compounds Encodes beta-glucosidase (GLUC). similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.719815575941575 -5.29388768794385 0.000264248689427627 1 5.94275966159134 13.1570915900535 -0.719815575941575 0.180086923355687
AT1G19370_at 5.92819442220558 6.2264864727708 5.5158655372206 5.52373289551473 6.54354075870122 6.39378836632551 4.99412238948641 4.83345396564991 4.90777146349989 4.67175699083455 4.99338813258694 4.96945654589452 5.34321496679796 5.09249711936925 5.34900158551582 4.85351882550107 5.14163346747317 5.1958119724113 4.41552034568744 0.204108998548233 0.200513155539148 0.196989873482997 0.195358447448634 0.201485646967314 0.206439609517616 0.198215793209305 0.192287961404053 0.202743841502235 0.196639918316977 0.208839886937516 0.194018823461266 0.193425377967839 0.192699046934053 0.195377952361314 0.202548972010881 0.202423603884862 0.197651372699961 0.196425581301356 1 1 - 6692972 6693448 6693212.364 6692755 6694925 - gene protein_coding_gene FALSE TRUE AT1G19370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75140.1); similar to Os06g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056610.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22202.1); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.475483318591065 5.29052418073258 0.000265606244004093 1 5.9385079237715 10.6360638977932 0.475483318591065 0.0641190682821163
AT1G02790_at 1.51581756915779 1.67771492794613 1.76849769492453 1.60528218427382 1.40929464276045 1.80377363807345 1.45434349699434 1.39580591474803 5.15539194890906 1.72671154875383 1.57144409526400 1.67697280781200 2.03788784187513 1.77966599490975 1.64856087548081 1.64772923672961 1.80318734867018 1.64685717525952 1.69686505433257 0.196288904877121 0.199954972460359 0.200226994760084 0.204077962939883 0.206148628478080 0.196585180184909 0.200897828325214 0.200240078363688 0.224329672467329 0.200145552074156 0.203576606265391 0.201256966899409 0.203136128835775 0.199798106127819 0.19990426379545 0.197666560233143 0.211183495162524 0.202552908779066 0.197836868870397 1 1|0 -|/ 610730 611337 611105.8 610391 612324 - gene protein_coding_gene FALSE TRUE AT1G02790.1 PGA4 (POLYGALACTURONASE 4); polygalacturonase encodes a exopolygalacturonase. Identical to Exopolygalacturonase clone GBGE184 precursor (EC 3.2.1.67) (ExoPG) (Pectinase) (Galacturan 1,4-alpha-galacturonidase) (PGA3) [Arabidopsis Thaliana] (GB:P49062); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07830.1); similar to NTS1 protein [Nicotiana tabacum] (GB:AAG14416.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.498663224600936 -5.28616935779463 0.000267374911249556 1 5.9330000554529 3.87191343660912 -0.498663224600936 0.0796597486930606
AT1G19970_at 2.73877729697145 2.94117554176487 2.625479131 2.25831416382847 2.55922866290615 2.23315478350896 4.26105148042466 3.98317259713309 3.40730841936884 3.234248763515 3.39129872212826 3.80655149958046 3.02613058039071 3.62228035283864 3.68046387407050 2.31582586906679 2.54530229529037 3.29836603165317 3.05777529890391 0.241644114363393 0.239331528111592 0.244507073482483 0.248749929071718 0.240110314035978 0.24426736252756 0.253872812493101 0.241042357662262 0.248641747452661 0.234768703767168 0.237258887556214 0.237630099077225 0.236942355806388 0.237678770619185 0.242508772988309 0.234768703767168 0.242303269515886 0.241485808065326 0.236193247934934 1 1|0 -|/ 6931208 6932140 6931552.556 6931003 6932680 - gene protein_coding_gene FALSE TRUE AT1G19970.1 ER lumen protein retaining receptor family protein similar to ER lumen protein retaining receptor family protein [Arabidopsis thaliana] (TAIR:AT1G75760.1); similar to ER lumen protein-retaining receptor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33333.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) -0.542166733948921 -5.28550916539221 0.00026764413088721 1 5.9321647626389 6.17198832238718 -0.542166733948921 0.103734111848304
AT1G67920_at 7.52027569347209 7.82112806184302 7.95875689778549 8.18721443512836 6.70897530734453 7.46315999315436 3.80526481633222 4.23678787114654 3.67919795985495 3.6283418933938 2.98948544515539 3.08576842707951 3.45053189971985 3.54533394972864 3.01299601820231 3.01777537843773 3.84488897953878 3.76397148532512 3.84362502413895 0.354869819351043 0.361267608759913 0.360082952668821 0.359824703733683 0.356110363636915 0.375347117844127 0.329071016270462 0.329071016270462 0.329071016270462 0.329071016270462 0.332736447599622 0.333453376105932 0.329071016270462 0.32925750321148 0.343628696362182 0.329078294145963 0.329071016270462 0.331710325069403 0.329071016270462 1 1 + 25477404 25477573 25477504.545 25477207 25477803 + gene protein_coding_gene FALSE TRUE AT1G67920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24600.1) 0.67772576821195 5.28424265058053 0.000268161408151605 1 5.93056211481628 10.2406448380396 0.67772576821195 0.163965223798717
AT2G32240_at 8.3648345277472 8.67974572810689 9.03420535373508 9.02396968698662 8.48188552357325 8.52439019484571 8.56152125289418 8.70798833799342 7.59783393985547 7.82219231353025 8.9538657385293 9.16199687055281 7.62779068780061 8.6719494177247 8.08651343397504 8.6597634873405 8.00074226940581 7.94806780411205 7.48881128740048 0.180516064432265 0.175169081334966 0.175388235442873 0.177989113074889 0.177816290329847 0.183096780736771 0.179704244508353 0.175169081334966 0.189840457423356 0.17614301629285 0.177861172968627 0.182279331457251 0.186353973478257 0.18648634934371 0.186664090524243 0.177556201051121 0.181153036060809 0.179729035411303 0.190550355785977 2 2 - 13691725 13692550 13691996.364 13691376 13695401 - gene protein_coding_gene FALSE TRUE AT2G32240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05320.3); similar to kinesin, putative [Leishmania major] (GB:CAJ04095.1); similar to OSIGBa0126B18.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66915.1); similar to OSJNBa0008M17.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE04334.2); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.470073630758889 5.28370206997673 0.000268382518152831 1 5.92987797608557 16.6848752727064 0.470073630758889 0.0605773116016027
AT4G27320_at 7.97874277085829 8.49804588274685 8.78158868477034 9.08124080476046 9.31267084482771 8.8265717903751 8.5085879768615 8.76863493674475 7.8665372433296 7.53297105527537 8.55763190221687 8.22225123307944 8.49209765568462 8.20841920534117 7.97571100430531 8.71434261637229 8.20669918852954 8.11600728507858 7.4885465953247 0.214907334281013 0.206672641610232 0.206921671963526 0.213271492786350 0.214769775914122 0.206686181461992 0.216161810253534 0.206773988184914 0.225469406312492 0.213910151705443 0.223811663614927 0.207423302097499 0.212014560332370 0.227544390748941 0.223928063464177 0.206672641610232 0.209817068097226 0.212234191390077 0.214827659234444 4 4 - 13679956 13680372 13680169.364 13678474 13680930 - gene protein_coding_gene FALSE TRUE AT4G27320.1 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G54430.1); similar to Os07g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059943.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC65369.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.622154259698322 5.28286757918834 0.000268724224166983 1 5.92882177212462 16.6900087828111 0.622154259698322 0.140950216645747
AT3G52560_at 10.0436104803619 10.1398286909237 10.3494189645571 10.3911373574356 10.384281407254 10.4982759655823 9.905587271734 10.0477929595826 10.0644837620995 9.87032888689964 10.6823380032813 10.3975449128601 10.459821815909 10.4621793857924 10.4889432417425 10.5420798975043 10.3118235766933 10.3608345178282 9.907650887052 0.0863908511186939 0.084578306359811 0.086472784021551 0.0839243924185098 0.0843129852022973 0.0833750617175512 0.0880300216121403 0.0946117563394697 0.0843827139105204 0.0844229953135172 0.0842716062067957 0.0853154375890888 0.084656090823301 0.0836143003714705 0.0838042406959018 0.0830876488726554 0.0872972937651434 0.083927636659327 0.0870652843410241 3 3|0 -|/ 19505658 19506905 19506004.3 19505359 19507062 - gene protein_coding_gene FALSE TRUE AT3G52560.1|AT3G52560.2|AT3G52560.3 MMZ4 (MMS ZWEI HOMOLOGE 4); ubiquitin-protein ligase|MMZ4 (MMS ZWEI HOMOLOGE 4) similar to MMZ3 (MMS ZWEI HOMOLOGE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G36060.1); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ3 (MMS ZWEI HOMOLOGE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G36060.2); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ3 (MMS ZWEI HOMOLOGE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G36060.2); similar to TO38-23 [Taraxacum officinale] (GB:ABA26987.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.443640698328841 5.28260873419665 0.000268830309408817 1 5.92849412993377 20.4253333943298 0.443640698328841 0.0363890734276397
AT3G28430_at 4.79869569040786 4.50412353783291 4.65503058215615 4.62396768172693 4.54269713115409 4.98638356546584 4.52389766500288 4.59920604853514 3.59310813945266 3.64422630881007 4.60904678783051 4.53368790693755 4.23806716138064 4.7349472103925 4.53290149096362 4.72669149588729 4.93917026880587 4.25986547092594 3.63369704946085 0.199224081532484 0.193402233118271 0.193590782372982 0.200991143697026 0.198558348964747 0.194169451159988 0.200528310312690 0.193402233118271 0.204284802617614 0.208954721192761 0.200514802469039 0.195053054248427 0.193402233118271 0.194765899437075 0.202682303005847 0.193402233118271 0.203918818208091 0.199654718171259 0.19618015103237 3 0|3 /|- 10658766 10659468 10659157.556 10658268 10664003 - gene protein_coding_gene FALSE TRUE AT3G28430.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28468.1); similar to Os04g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052403.1); contains domain ARM repeat (SSF48371); contains domain SUBFAMILY NOT NAMED (PTHR21481:SF2); contains domain FAMILY NOT NAMED (PTHR21481) 0.521829531456842 5.28161146149577 0.000269239448107131 1 5.92723168388796 8.7519874328094 0.521829531456842 0.0932356251068318
AT2G38870_at 8.68001849842741 8.89407348710982 8.62144347351725 8.65580798423301 9.52577023928829 9.30550606392217 6.47011607218552 6.84832017669296 7.60396627145587 9.871299888255 9.07935728685308 8.82281811408255 6.64017238739529 8.78810458257109 8.38698235319573 7.99612574542776 7.32334273265037 7.600493873769 7.63977574642188 0.198407550691425 0.195436537924451 0.199457521138732 0.195083461732815 0.202151816216771 0.199174183668133 0.207256297400033 0.203098126283777 0.204957181035517 0.196049947290135 0.195083461732815 0.195083461732815 0.220716902670684 0.195083461732815 0.195083461732815 0.195083461732815 0.199164491194575 0.202040693179045 0.195083461732815 2 0|2 /|- 16243641 16243786 16243716.556 16243459 16244358 - gene protein_coding_gene FALSE TRUE AT2G38870.1 protease inhibitor, putative similar to serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana] (TAIR:AT2G38900.1); similar to type I proteinase inhibitor-like protein [Citrus x paradisi] (GB:AAN76363.1); contains InterPro domain Proteinase inhibitor I13, potato inhibitor I; (InterPro:IPR000864) 0.505996940375889 5.27756952637924 0.000270904461191819 1 5.92211316848055 16.6008096343574 0.505996940375889 0.0845235383576409
AT2G47980_at 7.96814201396623 7.99095849965436 7.23820119740232 7.42250774933974 8.04290826906515 7.64231575689918 7.35896388191378 7.59063827232916 7.97191720995947 7.59797592863151 7.28279297611465 7.11568235369901 7.03588950110222 6.97218699633326 6.72747959613417 7.01607829072011 7.00923190940969 6.86380379333724 8.07027755616605 0.173415558313865 0.179453404444815 0.176795549612131 0.178660595024574 0.178117712557718 0.180558181801661 0.183924309980954 0.180257657372709 0.189961042665688 0.179189510716902 0.172343047645703 0.180593962773688 0.177628125038827 0.186230190748674 0.183680232205575 0.172343047645703 0.195608197395073 0.178992750228435 0.178320839671136 2 2 + 19643071 19643831 19643484.4 19638329 19644048 + gene protein_coding_gene FALSE TRUE AT2G47980.1 SCC3 (sister-chromatide cohesion protein 3); binding similar to Os05g0188500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054841.1); similar to SCC3 [Oryza sativa (japonica cultivar-group)] (GB:AAQ81937.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain STAG; (InterPro:IPR013721) -0.508928072467666 -5.27638264049549 0.000271395453265556 1 5.9206095930358 15.0983044927506 -0.508928072467666 0.0862911153883388
ATCG00065_at 6.18209528796965 6.96859847745906 7.29494129948832 6.53326645009765 6.08406785095882 5.4581540878038 5.83388596336377 5.80437023548716 8.44970605332411 7.63996630151505 9.91983384946677 10.3975141697100 9.87551626915774 9.61157077951374 9.23029439292208 9.69428744425779 8.85500693633095 8.0145515718508 7.78625631751912 0.249492822855593 0.254135011610133 0.249492822855593 0.250716705504425 0.252920994214949 0.251824552392578 0.249492822855593 0.25050053658992 0.249492822855593 0.249492822855593 0.258144517998204 0.256494069044152 0.253999000360867 0.252233926061593 0.250522674894096 0.254834554694096 0.252772210995129 0.249492822855593 0.249492822855593 C C - 69611 69700 69648.364 69611 69724 - gene protein_coding_gene FALSE TRUE ATCG00065.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. Identical to Chloroplast 30S ribosomal protein S12 (rps12-B) [Arabidopsis Thaliana] (GB:P62126;GB:P06369;GB:P28806;GB:P56803;GB:Q9XQZ8); similar to ribosomal protein S12 [Platanus occidentalis] (GB:YP_740544.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S12, bacterial and chloroplast form; (InterPro:IPR005679); contains InterPro domain Ribosomal protein S12/S23; (InterPro:IPR006032) 0.818274483441189 5.27252955260029 0.000272995921458765 1 5.91572665893062 14.9741548652972 0.818274483441189 0.218307965254089
AT2G30470_at 4.64175360547331 4.35163714302192 4.55490787517815 4.28117791177613 4.31404980041459 4.59723260759343 3.84536339472845 3.958663672352 4.51467898741478 4.28469516345698 5.73830380306541 5.49953386543247 5.86098506766141 5.64713597921096 4.33553965634314 4.77357509261009 5.48504737531787 4.29059351693567 4.46706967306053 0.207099904475775 0.209525645355580 0.20673256199966 0.206518871344812 0.200790191529843 0.21682866092143 0.203601425193754 0.202476214936348 0.216258007350055 0.203255347337441 0.205931339036097 0.212101992907773 0.204047896802355 0.202012892547749 0.201708337660994 0.198926493479954 0.208213843199993 0.204721202180879 0.210931658031473 2 2 - 12988044 12988483 12988325.455 12987584 12992120 - gene protein_coding_gene FALSE TRUE AT2G30470.1 HSI2 (High-level expression of Sugar-Inducible gene 2); transcription factor/ transcriptional repressor HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50?M ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT4G32010.1); similar to Transcriptional factor B3 [Medicago truncatula] (GB:ABE94132.1); similar to Os07g0679700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060642.1); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.50958947405401 5.27236940686261 0.000273062658047986 1 5.91552365181457 9.1310918692587 0.50958947405401 0.0868943138478102
AT4G39940_at 11.2232860026578 11.1615485656097 10.7944754524392 10.8498792072485 11.0052905108267 10.7784165996674 11.1896697928856 11.0419580315551 8.71722108881838 10.4519964486055 10.7705074116007 10.6783539105297 10.6964947574905 10.9640574367045 10.1853263163480 10.6931583734396 11.0654772471577 11.0310974613494 9.49099065877957 0.0898495932534003 0.0881293490665924 0.0871156880970437 0.0879840412976554 0.088105265635478 0.0890090848491655 0.0890251083477009 0.0879964361494495 0.110035518353884 0.0871156880970437 0.0963035144062625 0.088204018450521 0.0890138505787536 0.0903249064117054 0.0935725831761104 0.0871156880970437 0.0902954105018195 0.0904910471003264 0.0940338300138952 4 4|0 +|/ 18520270 18521226 18520747.7 18519711 18521562 + gene protein_coding_gene FALSE TRUE AT4G39940.1 AKN2 (APS-KINASE 2); ATP binding / kinase/ transferase, transferring phosphorus-containing groups adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete Identical to Adenylyl-sulfate kinase 2, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'-phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase) (AKN2) [Arabidopsis Thaliana] (GB:O49196); similar to APK (APS KINASE), ATP binding / kinase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] (TAIR:AT2G14750.1); similar to Adenylylsulfate kinase [Medicago truncatula] (GB:ABE85872.1); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) 0.455028113314035 5.2722691294112 0.000273104454892341 1 5.91539653376941 21.1625464435589 0.455028113314035 0.0489997254077659
AT1G31850_at 6.05981153983623 6.10686438339798 4.26404423679513 4.54731813075364 5.53907474078249 5.53390712351396 4.32353394196552 4.55449360394697 3.84490709631101 4.30217833410082 5.52773049127551 6.13572243530416 4.83289651261548 5.48939447302855 6.36070167968465 5.02021127348085 4.52747568077926 5.81367339048643 4.53293153936789 0.233500031169518 0.233701706152277 0.237060387154782 0.235591231594590 0.234451633950437 0.233310477631217 0.236432951992594 0.239720279969336 0.247735569805482 0.238463908056655 0.241254137235031 0.237581272380405 0.233310477631217 0.242151096376786 0.242693660602731 0.234356957192281 0.248535766426030 0.235670994024335 0.233310477631217 1 1|0 +|/ 11432624 11433239 11432886.4 11430202 11433679 + gene protein_coding_gene FALSE TRUE AT1G31850.1|AT1G31850.2|AT1G31850.3 dehydration-responsive protein, putative similar to ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3) [Arabidopsis thaliana] (TAIR:AT4G19120.2); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.473356804748292 5.27208626555139 0.000273180692220036 1 5.91516471929894 9.96120499529487 0.473356804748292 0.063778835316645
AFFX-Athal-25SrRNA_s_at 5.69437033091106 7.73264795029635 7.12423277904079 7.43725134089842 8.1540291077902 7.25650513882733 7.68515663251216 7.18686256649742 7.4754565776734 7.71345600980561 10.6729350801978 10.9256651966377 9.477984406227 10.2445547699573 10.0217831906461 10.0797913250790 8.22663616224306 8.1144331613006 7.16349637574479 0.193413472095040 0.179254700028625 0.200331276390738 0.18853591660685 0.179553005995108 0.181276735715551 0.186628697461124 0.180360435401820 0.188220815808985 0.183103644982349 0.186584455249528 0.18967588285377 0.182059949602302 0.189622035113162 0.182638791049531 0.186527355738251 0.18433269462403 0.180145163370475 0.182695147920078 NA NA NA NA NA FALSE FALSE 1.34395757268987 5.27204636499543 0.000273197330064892 1 5.91511413700925 15.8695199304854 1.34395757268987 0.398642321654112
AT4G14550_at 4.48931936062145 4.27833373185383 4.28768756067331 3.77931716035943 4.09211075704527 4.4303923114835 5.87432343016548 5.64105123061421 3.20825350972369 4.26677641294266 6.03188717965049 6.55195921746113 6.98691110032376 6.67605303036416 5.83189312578738 6.69823517858939 7.26925256257041 5.58113989419251 5.68591386191733 0.272290897300467 0.277375265251763 0.280914810712073 0.276284238929087 0.275628586913984 0.28866122377122 0.272290897300467 0.272290897300467 0.298080932064912 0.278415639514531 0.272290897300467 0.272290897300467 0.272290897300467 0.284042612729986 0.274426219139718 0.272290897300467 0.27826437293793 0.280309413153817 0.272881481713180 4 4|0 -|/ 8349050 8349743 8349407.5 8347818 8350015 - gene protein_coding_gene FALSE TRUE AT4G14550.1 IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19. Identical to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein) (IAA14) [Arabidopsis Thaliana] (GB:Q38832;GB:O23311;GB:Q9C5W8); similar to IAA7 (AUXIN RESISTANT 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23050.1); similar to IAA14 (GB:AAC49055.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.571527579333074 5.27021930627783 0.000273960335094773 1 5.9127976510158 10.0292657791747 0.571527579333074 0.118867988304335
AT1G54050_at 2.93222304170253 3.75716949509833 1.43979759839373 1.59026889954805 1.21709285096934 1.60146654132039 2.53214229744780 2.93174353034529 2.24944686901892 2.45564251850309 2.82055758940139 2.91752901041983 2.45922312057948 2.30600314987280 2.99034320190327 3.17066248673808 2.22164770582495 2.25515593753911 2.69995333383956 0.244344564222295 0.250665185043511 0.245108443524469 0.244342273849538 0.236347470977212 0.243965421719334 0.247470020500386 0.250077291946521 0.245384210137455 0.237267735106533 0.24963981669199 0.249372323761517 0.236347470977212 0.236347470977212 0.242673368518402 0.242899249037021 0.251345240077007 0.236347470977212 0.237097163038084 1 1 - 20183227 20183762 20183484.273 20183090 20183949 - gene protein_coding_gene FALSE TRUE AT1G54050.1 17.4 kDa class III heat shock protein (HSP17.4-CIII) similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to small heat stress protein class CIII [Lycopersicon peruvianum] (GB:AAK84869.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -0.700935208546471 -5.26975122258146 0.000274156176953494 1 5.91220408157654 4.80573195638921 -0.700935208546471 0.173969654621619
AT1G50710_at 5.45818649607395 4.9159863488972 3.87720747034262 4.17645940071811 4.86195694832614 4.63822658038482 5.41121072642795 5.34443558763408 5.08007267283872 5.39119952829859 5.17868264863467 5.2567071332284 5.0287510763259 5.22500598653492 5.35863416985604 4.46134003473189 4.10390569820345 4.64422200597032 4.93975782010157 0.257030580563068 0.268603012047187 0.269388840018116 0.283137052114558 0.257030580563068 0.266947851617191 0.257030580563068 0.257030580563068 0.266113348753798 0.260271949825891 0.274621071893051 0.257030580563068 0.262967311211102 0.270087395816995 0.266157292703474 0.257268999352728 0.285067925179050 0.274064740706256 0.257030580563068 1 1 - 18788412 18789464 18788832.833 18788177 18791470 - gene protein_coding_gene FALSE TRUE AT1G50710.1 similar to hypothetical protein MtrDRAFT_AC142394g9v2 [Medicago truncatula] (GB:ABE91638.1) -0.56192305135465 -5.26552328365009 0.000275931852279038 1 5.90684091065755 9.85754174548327 -0.56192305135465 0.114536424252361
AT3G57710_at 3.63074629411029 4.21673703044323 4.28930891316840 4.25300024342411 4.99144470712273 4.92062098918458 4.10375554254001 4.22021279029334 3.19703636169723 3.41119651082489 3.48486510084451 4.16351706767217 3.56027251456929 3.87011153381515 3.87758610519485 4.02586104970237 3.87728068293317 3.35736990096503 3.18923946975298 0.211076241631856 0.199098253571123 0.199139602722229 0.206036355032806 0.20603516706927 0.216270399910837 0.199068428273751 0.202154547996594 0.207960647630944 0.206507539169131 0.198446933306436 0.198059529192259 0.202376640362195 0.198770116139026 0.206528658900346 0.199016145508260 0.205657605699704 0.204923500509898 0.203424740118145 3 3 - 21397299 21397773 21397566.364 21396936 21398376 - gene protein_coding_gene FALSE TRUE AT3G57710.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57730.1); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.541007339624307 5.26329793687647 0.000276871364781920 1 5.90401674812187 7.84969436806272 0.541007339624307 0.104304993359443
AT2G03540_at 3.52842694345871 3.10146455677021 2.82735295639959 2.51146339063900 3.53875110345376 3.03115573632193 2.5769231369871 2.50482342719112 3.43873850552073 4.36212758962813 3.18044372564589 2.59655041616368 3.06519613706268 2.78950901294687 2.68628491471821 2.17679492407923 3.10733559682565 2.82026587277162 4.29520046917122 0.223573363540330 0.224438884901898 0.22363587132572 0.227168527470722 0.230218586637278 0.220582285765139 0.220843586819047 0.219956888918754 0.219956888918754 0.223820614784623 0.221963723325293 0.219956888918754 0.225636256676792 0.219956888918754 0.226756100396089 0.222327353270179 0.227348141234143 0.226741918440988 0.229227480158143 2 2|0 +|/ 1073778 1074473 1074145.778 1073756 1074512 + gene protein_coding_gene FALSE TRUE AT2G03540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain gb def: Hypothetical protein At2g15600 (PTHR19446:SF12) -0.589976666239089 -5.26317252049818 0.000276924414877271 1 5.90385755703979 6.36995503796939 -0.589976666239089 0.127748399842488
AT2G43620_at 1.91795543895386 1.95240911289385 0.945120338512007 1.15206136469741 1.17240249502287 0.973137790612504 1.29484984095909 0.809191235910587 2.35298215640506 1.27991560532131 1.28757430075218 0.800999190508038 0.67445358380551 1.35311258784137 1.45020241687040 0.753096578582679 1.05040506600675 1.47668742971592 1.55626525666089 0.184668858053439 0.193087133046027 0.176747377772044 0.178750990452723 0.177770141111581 0.18236440890169 0.177545253069422 0.179928818573729 0.190825990275032 0.187663971192530 0.180681350247207 0.179142785308778 0.179749347635684 0.178342829581823 0.182591997712782 0.180912457240366 0.181782414874181 0.194478343461381 0.182642960525013 2 2 - 18101058 18101754 18101282.727 18100847 18102102 - gene protein_coding_gene FALSE TRUE AT2G43620.1 chitinase, putative similar to glycoside hydrolase family 19 protein [Arabidopsis thaliana] (TAIR:AT2G43610.1); similar to Basic endochitinase CHB4 precursor (GB:Q06209); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.52841276091844 -5.26196447852312 0.000277435959264146 1 5.90232404349215 2.69490965238999 -0.52841276091844 0.0978305959172918
AT1G69260_at 2.69990338589961 2.95965713476001 4.12900229364871 3.91195848889417 4.04060643110729 3.81796575269333 4.41894311791232 4.1610213778018 2.70940941724770 2.74038846512376 3.10839388274093 2.14467099450519 3.41925552089501 3.46222536094189 2.24061660063992 2.84059583219289 4.97528440760855 3.62247006699797 2.46321873273638 0.237445041807022 0.234742716507266 0.234336397470218 0.240037280971055 0.242108454592851 0.238127837874675 0.234336397470218 0.248865842803174 0.258693827829007 0.241859629544476 0.244221376963471 0.239743554499867 0.234336397470218 0.234336397470218 0.247089494186059 0.234336397470218 0.247981860572859 0.236993921758608 0.243640407959709 1 1 + 26043415 26044166 26043775.273 26042825 26044383 + gene protein_coding_gene FALSE TRUE AT1G69260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13740.1); similar to Os07g0602900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060209.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94628.1); similar to Os03g0419100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050378.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 0.502009432885894 5.26087110057182 0.00027789981362889 1 5.90093586007749 6.69956289201527 0.502009432885894 0.0831153498120187
AT1G44800_at 6.17379461308998 6.94186513059485 8.2301014343742 8.70286529149287 7.40426588261066 7.11254654883861 8.92788445366374 9.1518422621064 7.9161623294278 7.97098987372649 9.36904222863266 9.6201524002125 8.80127008190614 8.83935121320354 9.1802145595794 9.1403192766366 9.09809874332334 9.23473513482314 7.66824970664745 0.185959557061993 0.182316462212943 0.171838833438763 0.174082078767109 0.179860250620982 0.189348524653149 0.178266149037509 0.172923927510748 0.17637955975043 0.182375145725691 0.181512193857516 0.179464257001080 0.174220140867521 0.178844014794272 0.175479400282656 0.172283035438983 0.171838833438763 0.172938331815258 0.195551764289174 1 1|0 -|/ 16916813 16917586 16917208.8 16916449 16919437 - gene protein_coding_gene FALSE TRUE AT1G44800.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); similar to Os02g0768300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048238.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.686097746327215 5.26052099538429 0.00027804851601664 1 5.90049131113834 16.3367449977915 0.686097746327215 0.168556953022860
AT4G01610_at 10.0920253481035 10.3482635897440 10.7030646465939 10.7268434858541 10.7263087962246 10.5843901472361 9.52626609507095 9.55036031214851 9.14931642609171 8.78379497650802 8.4873895580428 8.65537805518791 9.13255628328102 8.88244526473108 8.84801354613372 9.10186633881632 9.13078043201034 9.1819450314201 8.53007654010773 0.128744360691462 0.131201114549400 0.126751359037955 0.136072129033942 0.135417459800669 0.134617841349854 0.129313275799351 0.134537164571404 0.125865670738605 0.133340504232385 0.135713541428137 0.124022081933311 0.127250005032963 0.127414247255009 0.132628414925865 0.125307015759672 0.129270585309814 0.123888906480333 0.130273963457876 4 4 + 695987 696906 696281.545 694695 697206 + gene protein_coding_gene FALSE TRUE AT4G01610.1|AT4G01610.2 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02305.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32840.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1, propeptide; (InterPro:IPR012599); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.456203549422106 5.25962745983622 0.000278428415810654 1 5.89935663689524 19.156495033258 0.456203549422106 0.0510276271903441
AT4G36520_at 6.32389346562433 6.12386075731134 5.75742524665999 5.72650771288556 4.76252213227608 4.54096168133587 5.52832830393544 4.668878965412 5.24122759694377 5.9525880168866 4.48569972600299 4.74240307698016 4.39509305269009 4.935441509028 4.91812095622865 5.73893239995733 5.22850329534478 4.74961984031088 6.06171396557668 0.27504314849231 0.268570826059076 0.260519417909366 0.260519417909366 0.260519417909366 0.260519417909366 0.260519417909366 0.278940668124808 0.271344714557103 0.275842109240675 0.265876821285815 0.260519417909366 0.270314666773148 0.273004482863877 0.262933817045838 0.260519417909366 0.298728465448012 0.281855078401376 0.272566407202612 4 4|0 -|/ 17230869 17231510 17231111.75 17230592 17235521 - gene protein_coding_gene FALSE TRUE AT4G36520.1 trichohyalin-related similar to AUL1 (auxin-like 1 protein), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G75310.1); similar to 10A19I.11 [Oryza sativa (japonica cultivar-group)] (GB:AAD39596.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.658501320424612 -5.25717457255779 0.000279474130508166 1 5.8962410485415 10.7545822457818 -0.658501320424612 0.157537847120901
AT2G18870_at 1.63487137023268 1.31867130004834 1.97444603906738 2.84196040372690 1.42996916623039 1.62482610682564 0.98173644081738 1.52440466909774 1.53713621175560 1.20069564055806 1.75261390767585 2.01339657375594 1.55061895656109 2.41981319865556 2.77729050599457 2.17446530277979 2.85953099664897 1.95010819613033 1.21675058611985 0.372116830464686 0.356870459943118 0.356870459943118 0.363310015353402 0.356870459943118 0.364204210097263 0.383666497541806 0.356870459943118 0.392455020609169 0.384814892367269 0.375402961342099 0.356870459943118 0.356870459943118 0.361510697544108 0.371600890425125 0.372431958084647 0.360924994511422 0.40366439316934 0.361628651715528 2 2 + 8175436 8175503 8175469 8174553 8175750 + gene protein_coding_gene FALSE TRUE AT2G18870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30200.2); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE86602.1); contains domain gb def: Hypothetical protein At2g18870 (PTHR21736:SF1); contains domain FAMILY NOT NAMED (PTHR21736) 0.735957521272151 5.25521157137271 0.000280313998396264 1 5.89374691858883 3.41907261246569 0.735957521272151 0.188385060015468
AT2G30490_at 8.75197863512568 8.8732286262796 8.8540061164428 8.94471137297275 7.9160376481331 8.09588682037656 9.2117087877265 9.28641891965546 8.61552244650068 9.0612666076054 8.59657709726318 8.8898987351534 8.47508525701825 8.4262173911803 9.00962782886779 8.2602435086053 8.39787380476273 8.66705994373215 9.04021164060489 0.131810699035810 0.130677041149458 0.134196882979382 0.130359857579832 0.132010328759410 0.130852819852115 0.132412077567633 0.130469261905389 0.138784774582517 0.131959743267729 0.138068167628495 0.131919622734340 0.134745695829643 0.138670260552119 0.132989601895978 0.138210211961001 0.129448168620849 0.133189221808991 0.131494029357702 2 2 - 13000973 13001471 13001242.909 13000740 13002847 - gene protein_coding_gene FALSE TRUE AT2G30490.1 ATC4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. Identical to Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) (CYP73A5) [Arabidopsis Thaliana] (GB:P92994;GB:O04995;GB:O49834;GB:P92993); similar to CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3), p-coumarate 3-hydroxylase [Arabidopsis thaliana] (TAIR:AT2G40890.1); similar to cinnamic acid 4-hydroxylase [Solanum tuberosum] (GB:ABC69046.1); similar to cinnamic acid 4-hydroxylase [Arnebia euchroma] (GB:ABD77493.1); similar to Cinnamic acid 4-hydroxylase [Verbena x hybrida] (GB:BAE72875.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.446758602564804 -5.25196166365438 0.000281710359330352 1 5.88961615752108 17.489742037869 -0.446758602564804 0.0426909870340845
AT4G34290_at 6.0761804121342 6.20800472089978 4.22032011895473 4.11597442418811 4.10569834179703 3.85756835810959 5.27864762537604 6.82834524101852 4.43121445713999 5.25168612545402 4.41839697210431 5.63895669635646 5.14986499613116 4.63467359176907 6.44782316169388 5.17941036727878 4.70453031525055 4.06829675199436 5.14794629078342 0.221604662743534 0.219380959695963 0.227310754832366 0.222629772781877 0.225517079782322 0.226436639311797 0.216196239286964 0.219777112574559 0.231004595472287 0.216401190556486 0.217581419981629 0.225391256269493 0.216278837344693 0.225425993945113 0.217608953710698 0.214101555774759 0.219458786204337 0.225680549227285 0.216629890701898 4 4|0 +|/ 16410901 16412026 16411150.4 16410836 16412389 + gene protein_coding_gene FALSE TRUE AT4G34290.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G14880.1); similar to Os03g0761000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051349.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.968137853490792 -5.25091339948286 0.000282162330757804 1 5.88828336636644 10.0732722708255 -0.968137853490792 0.273152238835294
AT1G76120_at 3.7270244059319 4.02095172256826 3.38461652520421 3.3289764972703 3.82965713816721 3.84615582033208 4.70264933113148 4.39852202284551 2.86475218565859 3.60830477932418 2.95432183640641 3.01188737201646 3.01667024195171 3.23161784516626 3.31499531793514 3.01106263078324 3.09110590054338 3.26443334465716 3.93458637684697 0.237565584884045 0.22756603608517 0.229064642180697 0.227465731624407 0.231217359823380 0.239583657051294 0.233561954915025 0.229049751174875 0.245445564532268 0.230078434883282 0.235137473468635 0.229796052875512 0.22786646500154 0.237198596864338 0.232356628370561 0.226497145397352 0.228042942921414 0.235826872267802 0.226497145397352 1 1 - 28563742 28564329 28564041.636 28563564 28565367 - gene protein_coding_gene FALSE TRUE AT1G76120.1|AT1G76120.2 tRNA pseudouridine synthase family protein similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20370.1); similar to pseudouridine synthase [Candida albicans SC5314] (GB:XP_712546.1); similar to Os02g0668400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047686.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406)|similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20370.1); similar to Os02g0668400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047686.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_501773.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) -0.486069005734973 -5.249798984974 0.000282643667393800 1 5.88686625273403 7.19543231216089 -0.486069005734973 0.0738792850353739
AT1G08600_at 5.3127318964415 5.70558583625834 6.10018027159796 5.99719109138232 6.49633673330036 6.44980729710390 5.4897432262606 5.47990626498672 4.95437187377959 5.4485581053764 5.13941058842743 5.71964428220975 5.36048336262949 5.09965510596225 5.12934966218804 5.57512360115049 5.94165863569067 5.87991051477836 5.44262488781647 0.237465089598818 0.235265480228983 0.227698988325366 0.234211597060118 0.234393018796207 0.231864860134652 0.235729027365829 0.237434455036359 0.240171818072274 0.227031691990825 0.232530780676336 0.226722926088839 0.230204794759537 0.237497483132218 0.233365130498494 0.227514875285115 0.248256545269778 0.241755405704121 0.228539956987948 1 1|0 +|/ 2732887 2733395 2733183 2724565 2733616 + gene protein_coding_gene FALSE TRUE AT1G08600.1 ATRX/CHR20; ATP binding / DNA binding / helicase similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G19210.1); similar to Os10g0457700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064765.1); similar to SNF2 domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47753.2); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAK54297.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.481344944582376 5.24976363154008 0.000282658951455958 1 5.88682129287892 11.2601883728933 0.481344944582376 0.0707627997545627
AT4G30660_at 10.2109791747827 10.7444968998783 8.67161098419464 9.38696025703907 10.3604067811245 9.7605115347775 9.29612919572339 9.36068888410249 8.91820568947071 9.03926883599525 11.1085711217082 11.40646236857 10.7363903316228 10.9330884722764 11.2377557000820 10.6315700040679 9.64147524489707 10.3927181978192 8.8722467221227 0.155588696649417 0.159112562926828 0.172944049990741 0.171515765584368 0.162997528112109 0.157084467076987 0.159147427092531 0.159169575305328 0.186389846182035 0.162183325491873 0.15812273042076 0.160064063302752 0.155588696649417 0.161129680113855 0.156570129057967 0.158536045154647 0.169528657744467 0.161674572916138 0.176489287633090 4 4|0 +|/ 14955476 14955896 14955716.8 14955379 14956124 + gene protein_coding_gene FALSE TRUE AT4G30660.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At4g30660 [Arabidopsis Thaliana] (GB:Q9SUI0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G24040.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABE78792.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 0.729781182464888 5.2474860853461 0.000283645434438937 1 5.88392440519654 19.5760951369495 0.729781182464888 0.186418352734313
AT3G05420_at 6.80190414816075 6.58966462979321 5.65754058249239 5.60398040529944 5.85797301808299 5.62982294952427 6.86630086077981 6.76823377606608 6.42776094715159 6.24736729992145 6.7592353011285 6.98414173138494 6.0307097062814 6.38228601447396 6.80164130048102 5.84782722069012 5.92634764304478 5.78738281854089 5.83785568493365 0.198052108024975 0.190394169602536 0.201668729423138 0.195827627352612 0.198532456415990 0.201782061672114 0.198793753849943 0.193214785735568 0.203897464553022 0.193196955178848 0.196046475730794 0.190849720350967 0.190394169602536 0.214456429958850 0.210425080245595 0.191843384781654 0.20878926643995 0.198567795788404 0.197168449151956 3 3 + 1565916 1567011 1566498.636 1561784 1567324 + gene protein_coding_gene FALSE TRUE AT3G05420.1|AT3G05420.2 ACBP4 (ACYL-COA BINDING PROTEIN 4, ACYL-COA-BINDING DOMAIN 4); acyl-CoA binding Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. similar to ACBP5 (ACYL-COA BINDING PROTEIN 5, ACYL-COA-BINDING DOMAIN 5), acyl-CoA binding [Arabidopsis thaliana] (TAIR:AT5G27630.1); similar to putative transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAR88580.1); similar to Os03g0835600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051819.1); similar to acyl-CoA binding family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99749.1); contains InterPro domain Acyl-coA-binding protein, ACBP; (InterPro:IPR000582); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.462622395924609 -5.2474195676544 0.000283674300353828 1 5.8838397850559 12.4648981017776 -0.462622395924609 0.0572870830407133
AT1G49850_at 5.58060406441263 6.23819625487709 5.8752024253983 6.46168867084086 7.09053853572708 6.83916274281333 5.1260610069736 5.32105238939149 4.92125931868756 4.5210655637468 5.1363183114146 5.26354840776429 5.13769219125523 5.1484566731545 4.97715496035471 5.48164450219284 5.06157494920309 4.6466141880799 4.86854355079895 0.209618552977166 0.207198860223389 0.209609478540326 0.214123105674409 0.207414399406599 0.215820336586622 0.204206166779483 0.212635264576378 0.219282446840983 0.213338905746282 0.209503037317838 0.205253804704829 0.207348941571339 0.224427404317141 0.215914838655508 0.214215572814969 0.219860527739263 0.205877343769544 0.214181039698915 1 0|1 /|- 18459004 18459776 18459312.7 18458732 18460212 - gene protein_coding_gene FALSE TRUE AT1G49850.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G15580.1); similar to RING-H2 finger protein [Glycine max] (GB:AAN03470.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.668252854982074 5.24579817771445 0.000284378880830629 1 5.88177689556346 11.0050207616402 0.668252854982074 0.162118605997295
AT1G26270_at 7.20326248794244 7.43220228772361 6.12984107258792 6.31001292342076 6.71886789467035 6.8273549665214 6.42256693621913 6.56997057589343 7.07591974227456 7.01434238031019 7.01253309765457 7.13848313936537 6.28117255448298 6.99195407822175 6.56571117271608 6.31869322101303 5.97242473586262 6.58261176191299 7.29418034328642 0.185444633186405 0.182012634913505 0.199770647504579 0.183819208194443 0.180253590687638 0.198379026779847 0.185451234554593 0.191082092865054 0.189667824413155 0.181325684671196 0.182924320211477 0.179514783938795 0.183663179241460 0.179312029408588 0.182753505494797 0.185776015139720 0.191353559894721 0.183948988600473 0.189270737894358 1 1 - 9089813 9090315 9090061.273 9089511 9092444 - gene protein_coding_gene FALSE TRUE AT1G26270.1 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G03890.1); similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13640.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); similar to Os06g0283400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057397.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96840.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) -0.465340438057297 -5.24570026026319 0.000284421490587037 1 5.88165230031916 13.5698076225111 -0.465340438057297 0.0595400111291779
AT3G54790_at 5.11254788484911 5.85955165289615 5.7101915173152 5.84372500550658 6.15060694197812 6.27614294522627 5.6192526813567 5.73402648587809 5.22737045181796 5.1767178049563 5.90800487954776 5.89156624217186 6.01420275495247 5.92393367673063 5.72869791199394 5.59974332898067 6.52757658594625 5.60794489579843 4.91888638523612 0.259171416353522 0.249687821751735 0.257969612769148 0.255993925779288 0.249115251784677 0.25372678759189 0.253118939762185 0.250409121172667 0.256149271311104 0.253795065571386 0.252190271344746 0.25008872108901 0.256308206200294 0.256280017485623 0.261138386468086 0.249115251784677 0.256088333239995 0.265011449374537 0.257133511114443 3 3 - 20292984 20293435 20293227.273 20292513 20296104 - gene protein_coding_gene FALSE TRUE AT3G54790.1|AT3G54790.2 armadillo/beta-catenin repeat family protein / U-box domain-containing protein|binding / ubiquitin-protein ligase similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23140.1); similar to arm repeat-containing protein [Nicotiana tabacum] (GB:AAO61490.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.603186248386659 5.24526203042397 0.000284612273674882 1 5.88109465276944 11.2921891386351 0.603186248386659 0.13458025570849
AT3G20120_at 5.89603165491828 5.83838137701555 6.12596704441604 5.77362611785016 6.38147964487084 6.5336809458503 5.56763360223988 5.6265323081345 4.43223777397047 5.13454175818976 5.12895207732479 6.00960665361939 5.25297819837426 5.59760938059688 5.15149337381151 6.0083199516175 5.76261035393802 5.21931610308946 5.53649206039089 0.208584543250388 0.212005184753634 0.207850118989572 0.208215167269137 0.217116137232792 0.211441477008580 0.210578606665553 0.209833723767030 0.216664760351858 0.218416346660554 0.212620933325888 0.213105742869197 0.209673670364577 0.213150777672748 0.214455633651081 0.207850118989572 0.221232866365772 0.210512167196787 0.220709132120864 3 3 + 7025410 7025725 7025586.091 7023317 7025929 + gene protein_coding_gene FALSE TRUE AT3G20120.1|AT3G20120.2 CYP705A21 (cytochrome P450, family 705, subfamily A, polypeptide 21); oxygen binding member of CYP705A similar to CYP705A20 (cytochrome P450, family 705, subfamily A, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20110.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94648.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.476740300016275 5.24472722474193 0.000284845284934695 1 5.8804140655551 11.2433088997770 0.476740300016275 0.0679340353204978
AT2G15690_at 5.08206756498349 5.70790341757617 4.80067080663276 4.89523806013162 4.2214281141541 4.4331442954388 5.05990473622727 5.41121207024642 4.06163746876044 4.54453478559899 3.51166122055943 4.07036909992226 3.78466884778284 3.74373853319483 3.59816332176144 4.28320439026815 4.54862533265253 3.87925098508742 4.55654885827573 0.283574088344137 0.287484906448941 0.299286204690132 0.288187834221691 0.284560786687150 0.277839844157141 0.283570212717097 0.284735070139037 0.287299644240661 0.283142667235072 0.285573986987463 0.277839844157141 0.281649451097132 0.284259933630520 0.286078757099037 0.278307481839777 0.289477984196256 0.288470921689585 0.284361144850303 2 2 - 6838973 6839496 6839302.818 6838077 6840859 - gene protein_coding_gene FALSE TRUE AT2G15690.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G32450.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE80525.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.59388255798856 -5.24335901060298 0.000285442328248594 1 5.87867265826515 9.1089630934815 -0.59388255798856 0.130522006226927
ATCG00710_at 11.9548080186170 12.2545057487376 12.3948470007458 12.4403975900568 12.3151472711349 12.1230656120953 12.2718804126316 12.6418002896172 12.1474634941073 12.0440221240457 13.2453794770574 13.3104960120032 13.1812625601176 13.0652656515258 12.880021315091 13.0807769845117 12.6946657748336 12.9446060339587 12.0075757460935 0.0888580375944823 0.0899678504476163 0.0901686488635632 0.092602104780685 0.0951788809582627 0.089255016338107 0.0963515948369531 0.094523716355141 0.104039189082660 0.0966015839108828 0.0928472944776131 0.0897235480948432 0.0904147246509747 0.0980653751705355 0.091455729293946 0.0897335632650036 0.102689242042753 0.0949138387287006 0.0919050275384121 C C + 74485 74670 74587.091 74485 74706 + gene protein_coding_gene FALSE TRUE ATCG00710.1 Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII. Identical to Photosystem II reaction center protein H (PSII-H) (Photosystem II 10 kDa phosphoprotein) (psbH) [Arabidopsis Thaliana] (GB:P56780); similar to photosystem II phosphoprotein [Coffea arabica] (GB:YP_817511.1); contains InterPro domain Photosystem II phosphoprotein PsbH; (InterPro:IPR001056) 0.510785594581294 5.24318714648077 0.000285517417849099 1 5.87845389275482 24.8578880000643 0.510785594581294 0.0891911153885881
AT3G09900_at 8.57251654168761 8.93923202044025 8.80132465331491 9.12182481980399 9.57305923717613 9.25456329106189 8.3610059933514 8.59862445237246 7.9079984264504 7.8899468905162 8.35129364422687 8.6359538370296 8.5974638019482 8.42970097541258 8.11937104366391 8.7484173371129 8.59803147647864 8.6735463213244 8.18267103681599 0.164906334250931 0.163574448432668 0.156927971996105 0.163190610443956 0.173827692952562 0.169597795093675 0.168334317339911 0.162950421912882 0.185798592806033 0.165565078601535 0.169265273384093 0.162108738094435 0.161041089335977 0.172532047131139 0.170650004791956 0.158984962792148 0.176005276071739 0.162688595502328 0.166821426032682 3 3|0 +|/ 3035175 3036357 3035723.5 3034562 3036598 + gene protein_coding_gene FALSE TRUE AT3G09900.1 AtRABE1e/AtRab8E (Arabidopsis Rab GTPase homolog E1e); GTP binding similar to AtRABE1d/AtRab8C, GTP binding [Arabidopsis thaliana] (TAIR:AT5G03520.1); similar to ras-related protein RAB8-3 [Nicotiana tabacum] (GB:BAB84324.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.547765884215877 5.24283984784241 0.000285669220960741 1 5.87801180074136 17.159149420773 0.547765884215877 0.108777321599123
AT3G04890_at 7.11782785410765 7.05463069414872 7.05880425239966 6.51533235705343 6.90632670776003 6.65211042900875 7.27506797351317 7.55832221221584 7.1306266125524 7.20987252556788 6.88480798946261 6.34072399886929 6.25007481050261 7.08088381799431 6.14399944651314 6.73322748891626 5.19739803650662 6.76875760398451 6.89600828486598 0.184503728723198 0.187176663508884 0.185166780494418 0.186180520238494 0.185195443272287 0.189609381560018 0.184750236273063 0.182296919532379 0.200915361364664 0.187210238263606 0.18376509654609 0.190716646319399 0.185070108205464 0.183341256656864 0.197136161775046 0.181962044665580 0.203052070106651 0.200310864183901 0.188902592227786 3 3|0 +|/ 1347843 1349025 1348473.111 1347652 1349208 + gene protein_coding_gene FALSE TRUE AT3G04890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46100.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53979.1); contains domain NTF2-like (SSF54427) -0.561085202754648 -5.24206870817804 0.000286006589788803 1 5.87703010476879 13.7692127884038 -0.561085202754648 0.115339922384198
ATCG00730_at 8.07072380812902 8.97391768493429 8.48061235738875 9.15581907246883 7.98596859238791 7.82252388617983 8.9633746567334 9.12329861229976 9.44722579063674 9.57796666711188 8.21211830433615 9.0154201812554 7.95014521205586 8.71785488578714 7.77612913157523 8.89019244746976 7.20203357706482 9.6100224679233 9.54741132671545 0.144636430896780 0.146687753722468 0.143982086695688 0.14182292136446 0.145433230349750 0.145757271964623 0.160104292664873 0.147197528073494 0.143100925251260 0.146527942016453 0.155563569808905 0.150516273623876 0.148202415721466 0.140770953725647 0.164022415414861 0.141344007989155 0.174400546985766 0.154827487983387 0.151758355579104 C C + 77265 77604 77429.091 76481 77672 + gene protein_coding_gene FALSE TRUE ATCG00730.1 A chloroplast gene encoding subunit IV of the cytochrome b6/f complex Identical to Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) (petD) [Arabidopsis Thaliana] (GB:P56774); similar to cytochrome b (MTCYB) (COB) (CYTB) [Arabidopsis thaliana] (TAIR:AT2G07727.1); similar to cytochrome b6/f complex subunit IV [Nicotiana tabacum] (GB:NP_054531.1); similar to cytochrome b6/f complex subunit IV [Nymphaea alba] (GB:YP_053185.1); contains InterPro domain Photosynthetic reaction centre protein cytochrome b6/f_IV; (InterPro:IPR005870); contains InterPro domain Cytochrome b/b6, C-terminal; (InterPro:IPR005798) -0.762029724486177 -5.24085799031951 0.000286537124287806 1 5.87548858951453 17.5450002275260 -0.762029724486177 0.199122168604980
AT3G02830_at 8.00761852013573 7.81305957810957 7.78380906814062 7.69879853138869 7.75347648421748 7.12266692880229 9.60977379035966 9.26791606056732 8.92009770715164 9.02806964187852 8.80919818220466 9.00220040162422 8.45340855693819 8.97553888663444 8.85286517500032 9.06437552546636 8.45782028815658 8.98910539881113 8.81991680273328 0.175212382051024 0.175175771871626 0.181744929372126 0.179366645634314 0.173082201012153 0.185163700813372 0.167423985805078 0.173051606053117 0.175803966288945 0.168158335681842 0.175703037240670 0.168379245983745 0.170110708999832 0.168847508920660 0.173207351911942 0.16506442174536 0.179537633439241 0.168698530219793 0.167094387164721 3 3|0 +|/ 615140 615565 615407.333 613809 616151 + gene protein_coding_gene FALSE TRUE AT3G02830.1 ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding Encodes a zinc finger protein. Identical to Zinc finger CCCH domain-containing protein ZFN1 (ZFN1) [Arabidopsis Thaliana] (GB:Q8GXX7;GB:Q9M8S4;GB:Q9XFB8); similar to ZFN3 (ZINC FINGER PROTEIN 3), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G16540.1); similar to Zinc finger CCCH domain-containing protein ZFN-like (GB:Q9SWF9); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.591017449777897 -5.23830125945139 0.000287660912227514 1 5.87223243011035 17.0062692547697 -0.591017449777897 0.129486916396716
AT4G32350_at 6.22912925083354 6.22125262089741 5.76047674658558 6.00690817627409 6.65167224791772 6.81282462069802 7.18487530519992 7.28866970598997 7.01400492740267 7.0584099508395 6.83286764606917 6.08988315550662 6.38288524700624 6.61532636818835 5.89839442147693 6.6307974479893 6.76283508647898 6.33432304536555 6.73567189147921 0.158242252020605 0.167736405799467 0.157001298297768 0.162608034180472 0.154254032549703 0.160430172153783 0.164155151976548 0.164430560311011 0.160015886961365 0.155196970781847 0.158709452815690 0.154926478229277 0.156218876878585 0.167006438859804 0.16156985390369 0.161578168064514 0.160047552483274 0.154254032549703 0.157723876385997 4 4 + 15620190 15620601 15620467.455 15617472 15620916 + gene protein_coding_gene FALSE TRUE AT4G32350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79910.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46051.1); similar to Os02g0159200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045961.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) -0.457813071920836 -5.23775966362205 0.000287899565276178 1 5.87154252218616 13.2091975720498 -0.457813071920836 0.0540456823756326
AT1G66880_at 9.97004027217549 9.8061730210248 10.7578303930751 10.5597179194147 9.59752142185642 9.18796766362394 8.66838804561019 8.36968701484633 8.81839419038382 6.702035763096 7.20726176636587 8.32455442980617 7.2371155237428 7.90722587011 6.49450369131906 8.03760905656491 7.92077883945334 7.87006114736905 6.66034876380315 0.218401553129057 0.216645287450590 0.217850848406851 0.218180480572713 0.21802674878682 0.214848826259651 0.217049092551223 0.2161660642817 0.221413319649542 0.240639126384414 0.219111021317818 0.215168134627203 0.219475489037983 0.224590775390951 0.22494514976731 0.215676469506501 0.219550793751977 0.227603916148389 0.244022270300955 1 1 + 24958517 24959067 24958775.636 24950591 24959274 + gene protein_coding_gene FALSE TRUE AT1G66880.1 serine/threonine protein kinase family protein similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38210.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os05g0550800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056244.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.526741572954373 5.23540070226953 0.000288941488657957 1 5.86853695991265 17.1239065671296 0.526741572954373 0.0983610823903236
AT3G22120_at 10.1059264629567 10.7875923211742 5.48861230760837 6.52022846569437 9.03514307192257 9.36371116424464 7.26325326858967 8.4623023228599 10.5941324857245 10.4999538839843 10.4769239163527 11.3473876663791 9.56559616760994 10.1758742168169 10.4514543013308 9.76929815836453 7.68312315854553 10.1924925789417 10.4347890692473 0.170477520570883 0.169566525740176 0.233180951085372 0.215713501610738 0.167497258388633 0.165089916185466 0.191934960858316 0.169891695448272 0.180400682771721 0.170093431097212 0.165470936352525 0.16561038172767 0.171087772957508 0.171473899839512 0.165133643595603 0.167405766351238 0.226074642886207 0.164845977235681 0.169770629570966 3 3 - 7795290 7795545 7795419 7794964 7796317 - gene protein_coding_gene FALSE TRUE AT3G22120.1 CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding cell wall-plasma membrane linker protein homolog (CWLP) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to cell wall-plasma membrane linker protein [Brassica napus] (GB:CAA64425.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.05235060865185 -5.23470202275526 0.000289250853721455 1 5.86764657703265 18.6120431315620 -1.05235060865185 0.303442155627704
AT1G68585_at 7.42416998907093 8.0284386504907 6.53078652878197 6.81658147482549 7.36024570531914 6.99748418113458 7.02355618213062 7.58786857311406 8.45889761060787 7.61653120790133 7.85893153226545 7.5130742134451 6.96043295367293 7.50860965028926 6.16853642142712 6.89240165025655 6.38259502746509 6.859757334577 7.23501912012853 0.202071736938848 0.194010035153949 0.213666659835731 0.203493545015022 0.200931150771369 0.202934010378759 0.212504875054271 0.198920211256665 0.206480792142233 0.199443170468611 0.194010035153949 0.194010035153949 0.194299318312034 0.206672543731674 0.20813112259368 0.203779194665340 0.201222555308085 0.198633434892538 0.200431953098139 1 1|0 +|/ 25760577 25761029 25760807.8 25760263 25761226 + gene protein_coding_gene FALSE TRUE AT1G68585.1 metal ion binding contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.670920420570357 -5.23266617735612 0.000290154301239702 1 5.86505163576885 14.6152372410105 -0.670920420570357 0.163887770372686
AT1G05060_at 6.96060386441937 7.17725304253216 7.49381014627256 7.34502599159375 8.00720343591103 7.33503496142376 7.15268659218562 6.98623138059837 5.6678355569728 5.65087359404387 6.36431639416469 5.99635892604819 6.51618109222479 6.47059270236346 6.01180845222287 6.61030854245467 6.82399585827298 6.15864519419116 5.69189734769367 0.202896769532322 0.195768398550222 0.203077500057405 0.203155099397989 0.204458672803304 0.211283652397448 0.200023488352719 0.196832598114632 0.221508811042789 0.201178100930217 0.200997408393473 0.197003358982648 0.19736746327801 0.205455764595062 0.206178876875743 0.198452919873387 0.213431272398621 0.206310433002573 0.205764982981308 1 1|0 -|/ 1451667 1452641 1452265.8 1451029 1452871 - gene protein_coding_gene FALSE TRUE AT1G05060.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78856.1) 0.587449321436232 5.23225085882449 0.000290338974520874 1 5.86452216830260 13.3268452076069 0.587449321436232 0.128176320475089
AT1G43130_at 8.77421410324943 8.8152775698715 8.89184552100246 8.81283096969754 9.44182510853881 8.8782877178364 8.17459523094652 7.84201386581978 8.13430544032202 7.18355878837168 8.26090477542722 8.2856879690765 7.86448720808429 8.21850191263796 8.06197358951846 8.01300596654376 7.89256339031858 8.16455862556852 7.43614528481137 0.175177126129737 0.172779925782476 0.177044771361549 0.176811942911444 0.183022333262099 0.176469394318984 0.175486010476621 0.177315473458108 0.197539890934656 0.18104274566249 0.167456938908997 0.166124986380057 0.175917121683600 0.170393349788641 0.174764129265224 0.174461694515637 0.175940844628138 0.175406708710863 0.171856646913144 1 1|0 -|/ 16231176 16232441 16231856.222 16230648 16233673 - gene protein_coding_gene FALSE TRUE AT1G43130.1 LCV2 (LIKE COV 2) similar to COV1 (CONTINUOUS VASCULAR RING) [Arabidopsis thaliana] (TAIR:AT2G20120.1); similar to Os01g0867900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044917.1); similar to COV1-like protein [Solanum chacoense] (GB:ABE11607.1); contains InterPro domain Protein of unknown function DUF502; (InterPro:IPR007462) 0.557606364304442 5.2299613170701 0.000291359270111244 1 5.86160279561921 16.5438013946113 0.557606364304442 0.114283479113243
AT2G36080_at 6.5339952715962 6.42205665463238 4.89625018518553 5.25891105790971 5.50602893747741 6.25058640653031 2.08833159745165 2.53989236875982 1.71667812181599 2.11267706625908 1.78189870791347 1.76164563174086 2.00909891939531 1.94829136979188 2.71187787970896 1.96185644262891 2.84138020210888 2.47170983036448 1.94363989555451 0.308057667740039 0.312554190002027 0.287737630507067 0.317478162932144 0.347186371661939 0.295414383079168 0.275372565372455 0.275372565372455 0.299424159289833 0.275749176715306 0.280247377599529 0.276082972016388 0.283024308321076 0.275372565372455 0.277369283791942 0.278484060447324 0.290432448710547 0.275372565372455 0.275372565372455 2 2 - 15157973 15158297 15158108.182 15155441 15158654 - gene protein_coding_gene FALSE TRUE AT2G36080.1|AT2G36080.2 DNA-binding protein, putative similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G06250.1); similar to Os02g0683500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047754.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340)|similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G06250.1); similar to Os02g0683500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047754.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.671756676039566 5.22963222202825 0.000291506238059409 1 5.86118309206089 6.99215734369277 0.671756676039566 0.164386092393606
AT2G30620_at 10.7062279393840 10.6987105199850 10.9744970714492 11.0507583637182 11.2239326851398 11.1070907333012 10.7299421023007 10.7781946608827 10.5154659032546 10.5702475621808 10.9710513018728 10.9924347731989 10.8185693069681 10.7490132190189 11.0698718536689 10.9598385024562 10.940302977317 10.7240997753155 10.1174562309636 0.0735390359341606 0.0737805009812898 0.0765683555934618 0.0734837409401488 0.0735094645125865 0.0748261620244942 0.0755048473238965 0.0777336146534036 0.0809518585016124 0.07386193668742 0.0733347453141175 0.0732879568180805 0.074355834805948 0.0766480905466621 0.0756807876006123 0.0728702371645205 0.077402661633682 0.0790986587756305 0.0816837432421035 2 2 + 13052801 13053289 13053110.545 13052008 13053588 + gene protein_coding_gene FALSE TRUE AT2G30620.1 histone H1.2 Identical to Histone H1.2 [Arabidopsis Thaliana] (GB:P26569); similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 [Apium graveolens] (GB:CAA73171.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Histone H5; (InterPro:IPR005819); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.431446028012348 5.22948612156519 0.00029157150910733 1 5.86099676004536 21.5607713991168 0.431446028012348 0.0255820496372753
AT3G27190_at 3.45376636086466 3.56793366314111 2.50633634372113 2.69435099643608 2.74357441970668 2.70532424885480 2.87444410430410 2.80852449954151 2.86968244624506 2.87681567238292 2.6187382955506 2.15050636041849 2.13558618190845 2.49085406481933 2.29082415005376 2.58807290509083 2.63830952213577 2.39259340516298 2.60702576866340 0.203883846836846 0.198275067093076 0.203190540987296 0.196797693742947 0.199790496782257 0.203712897367378 0.200866530664847 0.199180132992488 0.211221436072152 0.198208924627719 0.204585957884587 0.202931394735048 0.201075119972995 0.199096362488812 0.196797693742947 0.200945878951780 0.205763198638652 0.201551015895833 0.206731181882274 3 3|0 -|/ 10040745 10042005 10041295.444 10040471 10044254 - gene protein_coding_gene FALSE TRUE AT3G27190.1 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.3); similar to uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1) [Arabidopsis thaliana] (TAIR:AT4G26510.2); similar to Os09g0505800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063605.1); similar to Phosphoribosyltransferase; AAA ATPase; Phosphoribulokinase/uridine kinase [Medicago truncatula] (GB:ABE83101.1); similar to Os08g0530000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062322.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836) -0.442546503285554 -5.2290216302753 0.000291779125705849 1 5.86040433665964 5.51812861610775 -0.442546503285554 0.0402857551036087
AT2G03120_at 9.38741328559324 9.44581075903767 9.84642388893987 9.7364704809269 9.46798626219645 8.79101446517644 8.52330950018285 8.34225415046641 6.70095926361546 6.96743818678907 7.39988535263678 8.01216209988954 7.64079287033926 7.57004378913361 7.39238115209639 7.46106863705268 7.13321047694556 6.8214990264763 6.77255312872066 0.220985299368452 0.218323655662397 0.224637492096687 0.217717841030134 0.224080739578210 0.225488030981557 0.223024061045880 0.222316260623448 0.263919442404789 0.219093430685381 0.224207435145479 0.217717841030134 0.217717841030134 0.233203857772614 0.233266939244247 0.226533716504825 0.240340095903033 0.232832386727068 0.222863375546307 2 2|0 +|/ 938730 939768 939263.667 937419 940336 + gene protein_coding_gene FALSE TRUE AT2G03120.1 signal peptide peptidase family protein similar to signal peptide peptidase family protein [Arabidopsis thaliana] (TAIR:AT4G33410.1); similar to putative aspartic protease A22B [Solanum tuberosum] (GB:CAJ77509.1); similar to Os02g0117400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045686.1); similar to Os05g0436400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055648.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.575503541509703 5.2225772999712 0.0002946758225886 1 5.85218107182336 16.3138506583715 0.575503541509703 0.123169688487906
AT2G38640_at 6.09393489909599 6.3512711813618 7.23690457818034 7.15640961486538 7.90625733035001 7.12458029300086 8.69627964074531 8.72893275453502 5.64964100537379 6.61739611181356 7.4923668331348 7.51799078835889 7.67010012412993 7.85185749331633 6.76754230937671 7.73660539711242 7.4476356992551 7.44441303893782 6.15003012974602 0.229780876898806 0.229071138215623 0.225823686508619 0.237965604587567 0.231108471098789 0.225510735128016 0.228874002518671 0.224640498655798 0.25596549393365 0.229750576366439 0.232346869550558 0.224368821077975 0.225355275777396 0.240733772404533 0.246974179523666 0.223831050523577 0.254085422169175 0.227945353268181 0.226614786089185 2 2|0 -|/ 16164816 16165518 16165272.3 16164682 16165634 - gene protein_coding_gene FALSE TRUE AT2G38640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41590.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16698.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.620237439986456 5.22241653932919 0.000294748472490176 1 5.8519758381277 14.2268644745654 0.620237439986456 0.143205909674767
AT1G12500_at 5.30254894971317 5.4694817319506 4.71706142925298 4.06230625282346 5.70662618058048 5.59810475202315 7.54564488835562 7.44659271021184 6.43537278608142 6.93235666903224 7.7578158848031 7.20105238666255 7.31413658712178 7.12076241482249 7.04786319021395 7.30021462589529 7.0431817932874 6.63847835234245 7.31391859420589 0.211528304061551 0.209621941036314 0.214614775353169 0.217722221069939 0.216950813433683 0.214690116322442 0.214896688486617 0.214090202557551 0.226828708763690 0.212911190505420 0.216130256101779 0.210021981398664 0.210709426632227 0.216181356211082 0.221262970925093 0.221429041217204 0.209621941036314 0.224600162809955 0.211721826405885 1 1 - 4263573 4264394 4264010.818 4263148 4265042 - gene protein_coding_gene FALSE TRUE AT1G12500.1 phosphate translocator-related similar to organic anion transporter [Arabidopsis thaliana] (TAIR:AT3G11320.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE81482.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.56799347255034 -5.22212376013124 0.000294880832160597 1 5.85160205211338 12.7669562806140 -0.56799347255034 0.119665658221647
AT4G33920_at 5.80856397574227 5.18580448796652 6.66321382980816 5.63244673405897 6.7413752368362 5.55320562803629 4.87537519589221 4.52732819127289 4.3298725550953 3.50869708145231 5.14556978798975 5.01873238453649 4.96038753289047 5.20734897358799 4.61155550923552 4.72096227808305 4.91815112258923 4.62061406645758 3.79832017813567 0.193366485798666 0.197988271491187 0.205022559531044 0.198665475315451 0.206093679002382 0.205298136130048 0.209382853402661 0.208334856600519 0.202250437928594 0.193366485798666 0.198155239657104 0.196003885097980 0.215997166142308 0.204591345188218 0.197984094417225 0.195882844431000 0.193366485798666 0.193366485798666 0.195879822198867 4 4|0 +|/ 16261698 16262641 16262246.3 16260668 16262986 + gene protein_coding_gene FALSE TRUE AT4G33920.1 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G51370.1); similar to Os12g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067133.1); similar to BTH-induced protein phosphatase 2C 2 K2 form [Oryza sativa (indica cultivar-group)] (GB:AAW29521.1); similar to Os03g0761100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051350.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 1.0348721649133 5.213052074601 0.000299013353782084 1 5.84001274027902 10.0131033991929 1.0348721649133 0.298898716919942
AT1G56650_at 3.56200383295702 4.26093250551214 5.09206461830962 5.39997552865433 2.84559578372203 3.22615060957873 2.88387339040949 3.35787614451801 1.52728114527932 2.07417278357467 1.93871140059826 2.22078738122309 2.57430252912325 2.36756325524111 1.93593021411551 2.89064381091327 3.62958429945540 2.63573670941414 1.76083254383699 0.238865654725586 0.236244116177988 0.254403634661240 0.232588964189602 0.226029958676808 0.232305246426452 0.229917272805839 0.232643701495066 0.236090038815643 0.226029958676808 0.233009250369295 0.226971873187610 0.226094366685373 0.237021272014177 0.232340974236967 0.227592687062555 0.243379675085936 0.226029958676808 0.242449281956084 1 1 - 21237402 21237965 21237638.455 21237260 21238802 - gene protein_coding_gene FALSE TRUE AT1G56650.1 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1); DNA binding / transcription factor Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene similar to PAP2 (PRODUCTION OF ANTHOCYANIN PIGMENT 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G66390.1); similar to An2 protein [Petunia x hybrida] (GB:AAF66727.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.680751896248594 5.21259492100584 0.000299223224608266 1 5.83942832244867 5.98435218882809 0.680751896248594 0.168922184923359
AT2G43980_at 3.72898938806898 3.88845467903085 4.60698416443135 4.4493427574082 4.36524122661798 4.18820294809487 3.91697601016358 4.01912702877045 3.07731089843746 3.42734373988029 2.78745342847654 3.16469397464012 3.96756670242657 3.60832235506676 3.70892971973954 3.42141324537972 4.14113739750177 3.3792871344496 2.88308519730156 0.260767484358433 0.246925561595175 0.257679378005598 0.246084721634780 0.249632859875716 0.250591745799893 0.253939497352962 0.254731053719302 0.260677965531257 0.246033759607761 0.256413112728745 0.259258487661629 0.251113586866486 0.253457618652163 0.249269015515030 0.245244070074553 0.247986280587543 0.247214683571865 0.251799037418614 2 2|0 -|/ 18215998 18216973 18216536.25 18215329 18218720 - gene protein_coding_gene FALSE TRUE AT2G43980.1 inositol 1,3,4-trisphosphate 5/6-kinase family protein Identical to Inositol-tetrakisphosphate 1-kinase 4 (EC 2.7.1.134) (Inositol- triphosphate 5/6-kinase 4) (EC 2.7.1.159) (Inositol 1,3,4- trisphosphate 5/6-kinase 4) (Ins(1,3,4)P(3) 5/6-kinase 4) (ITPK4) [Arabidopsis Thaliana] (GB:O80568;GB:Q8VYL6); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G08170.2); similar to Os09g0518700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063689.1); similar to putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD34407.1); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR008656) 0.453579940233305 5.20992738013989 0.000300450962689776 1 5.83601743027409 7.47121332861487 0.453579940233305 0.0525064433369552
AT2G17280_at 2.52744652238389 2.4354879884884 2.67658502771137 2.85442195587781 3.11210969866367 2.61909802649918 2.90957363638789 3.06488439292818 2.13560342789962 2.41341327051226 2.86286087323318 2.38697388502745 2.94804429630658 3.32403454398373 3.42506058448803 3.51346827062523 3.68572761252062 2.95005349741343 1.98819164311397 0.216879899144296 0.217365306444122 0.218424635264344 0.210953830518687 0.212072003640639 0.220208879323179 0.217238758960420 0.215255509862434 0.218882485058310 0.221337430637359 0.216275246917352 0.212362078438894 0.213896019871213 0.215332869712974 0.212475053607159 0.216897685742164 0.214976813653132 0.210220874313813 0.220246922854522 2 0|2 /|+ 7521002 7521850 7521332.2 7520210 7522129 + gene protein_coding_gene FALSE TRUE AT2G17280.1|AT2G17280.2 phosphoglycerate/bisphosphoglycerate mutase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64460.6); similar to phosphoglycerate mutase-like protein [Glycine max] (GB:AAG38144.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 0.519582020207706 5.20917139901824 0.000300799874290181 1 5.83505055029779 5.43299960243008 0.519582020207706 0.0959266657438251
AT1G22690_at 8.46099574109508 8.71238648859309 5.98560492279659 6.25872357194354 9.00116980470787 8.64867581928495 4.69703616097997 4.65413973836306 8.33768527320854 6.85800056070537 8.23029265658062 9.0655599456601 7.25451006299164 7.18510600981094 8.19549129693028 8.7448269538974 5.78871609594561 7.73920236306279 7.62157513376045 0.231956496867486 0.233341309455156 0.243956808364887 0.240862749959377 0.240996295703286 0.231591284185002 0.254315038955880 0.247735366784115 0.239638256543921 0.233685742074230 0.229384609927370 0.231704677788187 0.234604589592417 0.229384609927370 0.229384609927370 0.230882899534679 0.245584499385223 0.238816496028885 0.229384609927370 1 1|0 +|/ 8027339 8027902 8027649.375 8027287 8028114 + gene protein_coding_gene FALSE TRUE AT1G22690.1 gibberellin-responsive protein, putative similar to GASA2 (GAST1 PROTEIN HOMOLOG 2) [Arabidopsis thaliana] (TAIR:AT4G09610.1); similar to snakin2 [Solanum tuberosum] (GB:CAC44012.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.506056757321954 5.19991585176801 0.000305106634476361 1 5.82320460429799 14.7429499454712 0.506056757321954 0.0888974274127084
AT2G27960_at 8.15588342051653 8.2741570357592 8.04404302273302 7.91979432179928 8.87747508374825 8.36707657411145 7.84723256535608 8.0787327505209 6.79867391492 7.52192955293204 8.20320835014651 8.25174251080288 8.2929176397238 8.35085122845148 8.28367935304306 8.35053930978905 7.92386834729721 8.1047891786828 7.80564575713017 0.119586181838357 0.121376284795170 0.128445218426591 0.120119416916428 0.126804555388127 0.124123618533621 0.127586133746903 0.119073915576303 0.146370183206978 0.124532861264020 0.13436866033848 0.120766532084077 0.123038355988899 0.128063632637255 0.128488690595200 0.118997173639514 0.124031793788984 0.118997173639514 0.128312874117622 2 2|0 -|/ 11918031 11918593 11918283.7 11917800 11918762 - gene protein_coding_gene FALSE TRUE AT2G27960.1 CKS1 (CDK-SUBUNIT 1); cyclin-dependent protein kinase catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle similar to CKS2 (CDK-SUBUNIT 2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G27970.1); similar to cyclin-dependent kinases regulatory subunit [Glycine max] (GB:AAS13367.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) 0.528939444487258 5.19969149234068 0.000305211840790130 1 5.82291726069493 15.9933572958528 0.528939444487258 0.101429132489485
AT1G60600_at 6.57285328246618 6.50898767013519 4.64620003202343 4.15698743741124 6.9031274706013 6.11350709107081 6.64412389559316 6.25593215493859 6.5062152390969 6.20757593003086 5.82076976186271 6.62138631933909 5.25666017376309 5.3898377247216 7.00485144449383 5.83387390198718 5.50392901323161 5.67354017198580 5.9869826962428 0.271294411438627 0.260058756577213 0.264914449956166 0.268637967404064 0.254302909656298 0.263481903748857 0.257794895976700 0.264547995235196 0.267722915991510 0.254302909656298 0.254635052041420 0.261311308687049 0.258001326109552 0.270303461558019 0.262259872330866 0.256812402535114 0.281114033890394 0.260900048874382 0.266444031780192 1 1|0 -|/ 22328515 22329462 22329156.556 22328310 22331024 - gene protein_coding_gene FALSE TRUE AT1G60600.1 ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport. similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN64152.1); similar to Os03g0190100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049226.1); contains InterPro domain 1,4-dihydroxy-2-naphthoate phytyltransferase; (InterPro:IPR011937); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) -0.69300198377016 -5.1988000926237 0.000305630214860098 1 5.82177552976008 12.0360635554700 -0.69300198377016 0.174570984026369
AT3G15150_at 2.87398597339161 2.31296748004688 3.33876555121269 3.34959621456896 3.47116502346965 3.26734767105381 2.81078924720927 2.69029139043443 2.59726945002893 2.05299307736143 2.6296179533415 2.49704221126743 2.73717612666336 2.57755885800108 2.71033450920363 2.97216711137814 3.08979957084897 2.55398410430255 2.35006428832481 0.191644368576849 0.203519658818824 0.197451356314251 0.193604794302187 0.193304720746081 0.192644066791307 0.194157657940358 0.192347509810749 0.197618074277803 0.194518371877976 0.191358709311653 0.198954521561708 0.194741711406756 0.191358709311653 0.192468301875296 0.194240004655317 0.199100260120291 0.196988980177349 0.198745539962971 3 3|0 -|/ 5102816 5103263 5103005.333 5101992 5104147 - gene protein_coding_gene FALSE TRUE AT3G15150.1 similar to PREDICTED: similar to Non-SMC element 2 homolog (MMS21, S. cerevisiae) [Gallus gallus] (GB:XP_418440.1); contains domain UNCHARACTERIZED (PTHR21330); contains domain RING/U-box (SSF57850); contains domain no description (G3D.3.30.40.10); contains domain UNCHARACTERIZED (PTHR21330:SF1) 0.536113938013252 5.19505804883066 0.000307393170075408 1 5.81698104904087 5.54156473268886 0.536113938013252 0.105395873864618
AT4G30080_at 5.93055478830782 6.1979719506951 6.42219266561276 6.21117211282171 6.62224657947101 6.66895403331615 5.58332924943987 4.70425134539013 4.40440509338497 5.13338447501153 5.24102037186191 5.52639938791624 5.38618731910155 5.58435886177775 4.89732137195756 5.85426515492002 5.93678134853301 4.63143887347879 5.25333254902306 0.197692826466951 0.203426211963609 0.197871534834241 0.201529109346283 0.194476358747862 0.205688889094048 0.205499661142009 0.209356363604541 0.213802398556776 0.196797816924833 0.199476100570034 0.194476358747862 0.199080738622740 0.203978864080267 0.201340803251856 0.194557860112606 0.206328501573781 0.205658897704914 0.202197168206094 4 4 - 14703569 14704021 14703801.455 14703207 14706342 - gene protein_coding_gene FALSE TRUE AT4G30080.1 ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. Identical to Auxin response factor 16 (ARF16) [Arabidopsis Thaliana] (GB:Q93YR9;GB:Q9SZW1); similar to ARF10 (AUXIN RESPONSE FACTOR 10), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G28350.1); similar to Auxin response factor 16, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54297.2); similar to putative auxin response factor 10 [Oryza sativa (japonica cultivar-group)] (GB:BAD23727.1); similar to auxin response factor 10 [Oryza sativa] (GB:BAB85919.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.664481030700338 5.1926469819825 0.000308534783129201 1 5.81389054223396 11.1988819032984 0.664481030700338 0.163351242700384
AT3G24830_at 10.7404343939718 10.9986166590342 10.2562481951880 10.3528686732471 10.58915013651 10.4200035987406 11.0021070815119 11.1494922326511 10.4453538540180 10.5639787208226 10.2383288577378 10.4121689636012 10.2082697707763 10.0791966097679 10.7125956093166 9.7762031299094 9.86105916437413 10.0873854502489 10.5807291340402 0.107604880472141 0.107058412893610 0.103598444088729 0.107495525290364 0.109792672147237 0.112623142423648 0.109795668361263 0.106900355178837 0.108222753836805 0.105427686345423 0.103802476670197 0.101779831345743 0.106345751679432 0.112629038992718 0.101779831345743 0.109899849143581 0.111420258506415 0.113133860073219 0.102360129631433 3 3|0 +|/ 9064649 9065833 9065160.9 9064539 9066096 + gene protein_coding_gene FALSE TRUE AT3G24830.1 60S ribosomal protein L13A (RPL13aB) Identical to 60S ribosomal protein L13a-2 (RPL13AB) [Arabidopsis Thaliana] (GB:Q9LRX8;GB:Q8RXI2); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) -0.463107283015634 -5.19172063710901 0.000308974591522984 1 5.81270287452992 21.0395758784036 -0.463107283015634 0.0615078570326476
AT1G62390_at 7.99556572905977 8.14425157253627 7.45413110175477 7.67941880254174 8.0984262369241 7.99684929131191 8.47223967068508 8.58078150658215 8.28139947728759 8.07632898839194 7.86201305953559 7.8283282831596 7.97679082905184 7.60460531986958 8.22535351611997 8.06695828041555 7.78739731629305 7.40988352558181 8.42210038206592 0.161784704445992 0.167882230295614 0.176482385911848 0.172689894257918 0.161784704445992 0.187006416454799 0.161940393982238 0.164551780091342 0.172762638262751 0.168568737196186 0.172411004933890 0.166173540650963 0.167165567977416 0.210493176127628 0.168479222813062 0.165993307754036 0.186553937387774 0.174862168461279 0.168530495405175 1 1 - 23088319 23088855 23088644.273 23087958 23090792 - gene protein_coding_gene FALSE TRUE AT1G62390.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT2G25290.1); similar to Octicosapeptide/Phox/Bem1p [Medicago truncatula] (GB:ABD32646.1); similar to Os09g0135400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062638.1); similar to Octicosapeptide/Phox/Bem1p [Medicago truncatula] (GB:ABE85285.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.452889972288898 -5.19106637416757 0.000309285621806262 1 5.8118639502465 16.1052625966754 -0.452889972288898 0.053328145741867
AT2G18750_at 8.25769534985618 8.11447829907867 7.97092689293933 8.26853463859932 8.99924003182975 8.65874002749422 8.0566874448224 7.64154198055248 6.98187752427629 6.52421698756706 7.055157979881 7.13934865283604 7.42356336005595 7.01925648139369 7.17615341231562 7.09224555399098 7.50498182367837 7.45432202612086 6.30577980096087 0.206159181279671 0.206611181653138 0.215156436797285 0.215921123847595 0.204703131817858 0.209186820746502 0.210663689715928 0.226367303388105 0.212549978804130 0.212623135815884 0.214124023765835 0.21065742076348 0.219649829679413 0.216744210356531 0.218611847729829 0.209612887204360 0.214807968161359 0.217678759396570 0.226520945891854 2 2|0 +|/ 8133754 8134337 8133968.375 8132600 8135703 + gene protein_coding_gene FALSE TRUE AT2G18750.1|AT2G18750.2 calmodulin-binding protein|calmodulin binding similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G57580.1); similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G25800.2); similar to calmodulin-binding protein (GB:AAB37246.1); similar to Os02g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046071.1); similar to Os04g0444200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052891.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR012416) 0.542965093077107 5.1909651069494 0.000309333792921109 1 5.81173409414487 15.1645239659226 0.542965093077107 0.109088628540581
AT1G77810_at 6.58930162341908 6.8704162738414 7.68908256891434 7.66145813161166 6.63610856113634 5.84584196385422 5.57737635122644 5.30457254282865 5.1482372225646 4.65939982410231 5.27994344532331 5.13342875412727 5.30657660982037 5.19759926830473 5.34614422548970 5.51816354902923 5.70920355886587 5.01289089678896 4.9202316464948 0.325028104355955 0.322421702730468 0.332778698035201 0.324208162433523 0.338989039091084 0.323885163423220 0.319673470398044 0.319673470398044 0.331414141726237 0.328882855172090 0.320632084240340 0.320961455897381 0.325841766564776 0.326301396184993 0.319673470398044 0.319673470398044 0.319673470398044 0.331051716561503 0.319673470398044 1 1|0 -|/ 29265888 29266469 29266178.286 29265456 29268007 - gene protein_coding_gene FALSE TRUE AT1G77810.1|AT1G77810.2 galactosyltransferase family protein similar to DD46, transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22015.1); similar to Avr9 elicitor response protein [Nicotiana tabacum] (GB:CAA06925.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659)|similar to DD46, transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22015.1); similar to Avr9 elicitor response protein [Nicotiana tabacum] (GB:CAA06925.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.638205166315848 5.18690330208378 0.000311272497918727 1 5.80652407345682 11.6329114285320 0.638205166315848 0.1527134379154
AT2G45600_at 7.56912211306448 7.88854653370777 6.82051619034816 7.10406863096201 7.55870005442751 7.62336120419922 8.62800910482129 8.62295075547638 7.27098552503404 6.67218617615212 6.50511765225185 6.83014032048334 7.24164788792341 6.63347259653368 6.44383071717826 7.07337072659975 7.3571460915198 6.81736562437505 6.83304379767414 0.213209406421178 0.204696987411944 0.213816897148687 0.208869804641966 0.204071837761786 0.208337437937260 0.207733871375423 0.201535307745051 0.210418186662621 0.200278257436185 0.200278257436185 0.203858857587874 0.207487997959988 0.209076440129568 0.204207243051447 0.203714526712057 0.215708417084787 0.214427571510085 0.205896734380186 2 2 + 18797266 18797788 18797512.545 18796662 18798026 + gene protein_coding_gene FALSE TRUE AT2G45600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45610.1); similar to CXE carboxylesterase [Malus pumila] (GB:ABB89004.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.48156966048094 -5.18661744227714 0.000311409423499231 1 5.80615729317229 14.6209926325733 -0.48156966048094 0.074762939238534
AT4G01550_at 5.9859384819781 6.49101444339327 6.49359774230511 6.09367673836747 7.78139010090941 6.94855500731233 6.34181943581121 5.41909475221751 3.79930470320008 4.3802516720805 5.44322427129795 4.95517848595802 4.98692408170236 5.16663205797782 4.86787751669278 5.01411539486316 5.32049137150487 4.73737168395793 4.10323570786814 0.322910055785414 0.329057992908211 0.329120659791170 0.322910055785414 0.327903172203299 0.344218690763445 0.343785095099059 0.338220924263629 0.370644091511878 0.322910055785414 0.324239870899166 0.322910055785414 0.334800233896384 0.325167525770148 0.322910055785414 0.322910055785414 0.338104900720663 0.326878672784376 0.327776702549240 4 4 - 674127 674735 674497.5 673862 676411 - gene protein_coding_gene FALSE TRUE AT4G01550.1|AT4G01550.2 ANAC069 (Arabidopsis NAC domain containing protein 69); transcription factor|ANAC069 (Arabidopsis NAC domain containing protein 69) similar to ANAC068/NTM1 (NAC WITH TRANSMEMBRANE MOTIF1), transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G01540.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); similar to Os08g0157900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061034.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441)|similar to ANAC068/NTM1 (NAC WITH TRANSMEMBRANE MOTIF1), transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G01540.1) 0.868525474575839 5.17706451530066 0.000316022151140151 1 5.7938916873281 11.0222562806421 0.868525474575839 0.242281082547793
AT1G07070_at 5.71987519179099 5.91983005475587 4.86972653447659 4.89914862310702 5.19312341863173 4.81731793152162 6.17518728946576 5.95030234657435 5.09194154643993 4.97110652245073 4.85617714561564 6.24596286348984 4.83257412154685 4.68103644971578 6.26960965585559 4.82953798593874 4.50338721061708 4.66322336727706 5.24439861461373 0.222016368569459 0.214105455605661 0.214105455605661 0.214105455605661 0.214961794113943 0.216838128961262 0.225839086869054 0.225889184844238 0.227824673713775 0.215823258255870 0.219621131535784 0.21778410315963 0.215670690889543 0.219098548785158 0.216305101423229 0.214105455605661 0.218960975844321 0.221811697597493 0.221234917749050 1 0|1 /|+ 2168915 2169665 2169418.2 2168563 2169850 + gene protein_coding_gene FALSE TRUE AT1G07070.1 60S ribosomal protein L35a (RPL35aA) Identical to 60S ribosomal protein L35a-1 (RPL35AA) [Arabidopsis Thaliana] (GB:Q9LMK0); similar to 60S ribosomal protein L35a (RPL35aC) [Arabidopsis thaliana] (TAIR:AT1G74270.1); similar to ribosomal protein L33 [Castanea sativa] (GB:AAK25760.1); contains InterPro domain Ribosomal protein L35Ae; (InterPro:IPR001780) -0.494381610770115 -5.17475008367068 0.000317150561507466 1 5.79091757039912 10.5493993377114 -0.494381610770115 0.083470959183079
AT2G13440_at 6.50065269118646 6.03488352022492 5.72231952599863 5.79537341027412 6.12447177372762 6.1433684140604 7.49366516278569 6.81202331924195 7.19078193491487 7.30779668780337 6.92888864506016 7.2046155234102 6.86914369050132 6.80195886556519 6.98724503731477 7.0856813239877 6.86559196222598 6.65078983989187 7.67089452383496 0.20242372236107 0.203232565158281 0.203402366809855 0.217978195306511 0.204978314621483 0.206125195389330 0.206732027551626 0.202520712934946 0.219431111880186 0.206217118892236 0.207462790919051 0.207466833834054 0.208442397805621 0.203582068037735 0.211400537576842 0.200868877519702 0.200439429204213 0.208050681948347 0.200439429204213 2 2|0 -|/ 5600389 5600983 5600675 5600142 5605378 - gene protein_coding_gene FALSE TRUE AT2G13440.1 glucose-inhibited division family A protein similar to glucose inhibited division protein A [Trichodesmium erythraeum IMS101] (GB:YP_722488.1); similar to glucose-inhibited division A family protein [Musa acuminata] (GB:ABF72028.1); similar to glucose-inhibited division A family protein [Musa balbisiana] (GB:ABF70103.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Glucose-inhibited division protein A subfamily; (InterPro:IPR004416); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027); contains InterPro domain Glucose-inhibited division protein A; (InterPro:IPR002218) -0.614753956767156 -5.17123519360833 0.000318872435735315 1 5.78639898295393 13.485376598777 -0.614753956767156 0.143465392893293
AT3G23170_at 4.29804955787062 4.54774782302789 4.72764617784425 5.0733069330424 3.96382557625336 4.08239728515870 4.51787295947349 4.62006641818552 3.30708674671355 2.79025454366441 4.26732036129216 3.61666433223036 3.18786028028909 3.82327950882258 3.52706512902803 3.52367909084583 4.10944092362897 4.25688089516851 2.25289860306395 0.231691693820121 0.239989568480768 0.234547277667593 0.237330401005422 0.225462792576037 0.239002667059711 0.230839647631953 0.243490153806086 0.237473679742766 0.243232759051971 0.229879892955401 0.232425314666311 0.231014066710877 0.228578131874676 0.225544223167559 0.227073640711323 0.229423321389210 0.227375192326741 0.240231342658762 3 3 - 8268288 8268555 8268421.545 8267949 8268742 - gene protein_coding_gene FALSE TRUE AT3G23170.1 similar to ATBET12 [Arabidopsis thaliana] (TAIR:AT4G14450.1) 0.485735160392256 5.16691464700102 0.000321002571533491 1 5.78084163265106 7.76508264784561 0.485735160392256 0.0786082279793436
AT1G07750_at 8.26588563048629 8.30178356890326 8.55578140161535 8.63004291140418 8.65293548726631 8.5527211393368 8.0758943668606 8.04332466678016 7.55853234803809 7.3184472230872 7.64472544482722 7.6430666231412 7.9264235694035 8.06765262406946 7.77527350286297 7.30966023411044 7.67748272047764 7.92404812259324 7.0906916545587 0.189494602923340 0.191186188940069 0.199268209317001 0.193960859346006 0.195137136658865 0.206972834323327 0.193119238729946 0.193431607564024 0.19728413094085 0.200254249536921 0.201071464406848 0.199891238016432 0.190030787521392 0.191833289508601 0.200647508817496 0.194632258711938 0.224062777946834 0.193190577535627 0.194367459733911 1 1 - 2404317 2404906 2404588.182 2404034 2405940 - gene protein_coding_gene FALSE TRUE AT1G07750.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G28680.1); similar to Os05g0116000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054469.1); similar to legumin-like protein [Zea mays] (GB:AAO63267.1); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.4248163533029 5.16563750764048 0.000321635116804532 1 5.77919825491092 15.9190954867885 0.4248163533029 0.0231577498501667
AT3G28540_at 10.0264174128072 10.2399775922930 10.4298080702865 10.2709716310351 9.37109881255118 8.81008835170788 9.10763292209355 9.04515684082582 8.58599930218215 8.90668387863781 7.25331117888726 6.53517316896701 7.95999384923067 8.17647443406306 5.7420228582966 8.16361110205113 8.50077397770924 7.4761764270328 8.50850957676542 0.192136041978745 0.19727558437822 0.196841622867634 0.201423464906127 0.19471522506907 0.201466646288983 0.200880360581303 0.195997850178038 0.196640684156586 0.195029897438852 0.215691783904696 0.205392366261637 0.196472174547588 0.191769034926696 0.221730730646919 0.194816375186062 0.199038505329925 0.198374850468731 0.197966766931775 3 3 + 10696715 10697184 10696981.545 10695681 10697360 + gene protein_coding_gene FALSE TRUE AT3G28540.1|AT3G28540.2 AAA-type ATPase family protein|ATP binding / ATPase similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28520.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28510.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78548.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.537713301804233 -5.16129707151378 0.000323794753342967 1 5.77361094147387 17.7341471427291 -0.537713301804233 0.107999554758022
AT1G22570_at 8.59877529830198 8.83146870182847 7.85752141914178 8.0886905000404 8.8418205619829 8.73306353325699 6.77489173183049 7.01267784644768 5.82190117823494 5.58624391592981 5.19195457918105 4.71184024400595 6.2605267053395 6.87210523727778 4.01101184470554 6.35098657121905 7.30936563955072 4.51727681310265 4.4231184776051 0.257550599177046 0.24687440505232 0.251534319382194 0.247588335343773 0.251517740563223 0.250891733974188 0.251067168518797 0.247457166899202 0.264672788928085 0.258575707439759 0.249105036720555 0.250411875284339 0.253161901207572 0.261335851266625 0.249400452529646 0.25099966002902 0.249639925560011 0.260906096001622 0.256406634744188 1 1 - 7976684 7977177 7976896.636 7976609 7978562 - gene protein_coding_gene FALSE TRUE AT1G22570.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72120.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G22550.1); similar to putative oligopeptide transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD82719.1); similar to OSJNBb0008G24.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB86548.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.475933103022261 5.16124394667933 0.000323821281255218 1 5.77354253446594 13.5574743548810 0.475933103022261 0.0725913658045519
AT2G30050_at 5.68831080802707 5.85162451474018 5.16112465247148 5.33728075954844 5.69211245701728 5.98974486250223 5.37715501324408 5.42851155752865 4.67078792439849 4.49705162964577 5.65175046523212 5.85603503477549 5.38575589545746 5.5074128576967 5.39165268523189 5.49517928296728 5.60445625323781 5.5257245244171 4.56058723262648 0.258484057250173 0.264355808817655 0.263994156736520 0.261630189018279 0.258193186249461 0.258748298339719 0.257912410376885 0.260710409293414 0.272439201648386 0.268248743680917 0.265156418823247 0.257177490685979 0.257177490685979 0.274261172585040 0.259682831544687 0.257177490685979 0.258756067400748 0.275043366607777 0.261857884252043 2 2 + 12832930 12833427 12833112.909 12831528 12833761 + gene protein_coding_gene FALSE TRUE AT2G30050.1 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G01340.2); similar to protein transport SEC13-like protein [Solanum tuberosum] (GB:ABC01897.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.467384411076634 5.15962723439488 0.000324629689996614 1 5.77146050722104 10.6299271466852 0.467384411076634 0.0667831567425834
AT2G38550_at 8.41953218909376 8.424223766673 8.0329157561274 8.40856036352296 8.44309945592698 7.97790005272783 7.68623562906149 7.57199634467256 6.06457792138015 6.88953241344904 7.40293959575521 7.40560330683608 7.38177129400614 7.35399636071028 7.52922167491007 7.24625169614224 7.64097732909954 7.16257818275769 6.59352647396947 0.18325334017666 0.180665565918333 0.190100115769395 0.183259616571898 0.180665565918333 0.189897960417794 0.186725189404922 0.185907697853129 0.199453685285949 0.187391366358081 0.18117059790838 0.180665565918333 0.187866951055114 0.189375589016863 0.197637153569372 0.181529737325088 0.199588227322123 0.187225163594620 0.184053315547846 2 2|0 +|/ 16140065 16140773 16140289 16139084 16141493 + gene protein_coding_gene FALSE TRUE AT2G38550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57280.1); similar to non-green plastid inner envelope membrane protein precursor (GB:AAA84891.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.532330209231014 5.15926852161998 0.000324809347821268 1 5.77099848757691 15.0737061278724 0.532330209231014 0.105349218119243
AT2G02020_at 2.42538680456019 2.95886903291872 1.95289088538821 1.95868673857585 1.85411824612243 1.95582144753838 3.54451082955425 2.81905799330538 3.41539217890324 3.50631896675810 3.41733906459369 4.04959990728335 3.1411725998496 2.98304543891657 3.09173653462194 4.22482302937119 2.80220974317695 3.09101681983323 3.97143750048779 0.233731428615572 0.233371667812508 0.255173558261470 0.237947307237606 0.23621976857831 0.251110345607048 0.233392797930339 0.233371667812508 0.252208085232281 0.254812237841642 0.240287554993637 0.234906120973623 0.233917208518340 0.245786348329902 0.239260572918108 0.245019357904511 0.249742257961713 0.239698913688475 0.253382958179504 2 2 + 480552 481077 480738.818 479100 481184 + gene protein_coding_gene FALSE TRUE AT2G02020.1 proton-dependent oligopeptide transport (POT) family protein similar to ATPTR2-B (NITRATE TRANSPORTER 1), transporter [Arabidopsis thaliana] (TAIR:AT2G02040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G62200.1); similar to LeOPT1 [Lycopersicon esculentum] (GB:AAD01600.1); similar to peptide transporter 1 [Vicia faba] (GB:AAP44102.1); similar to amino acid/peptide transporter [Prunus dulcis] (GB:AAF20002.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.643754246094488 -5.15292503096574 0.000328003892248209 1 5.76282428967361 5.92425146770652 -0.643754246094488 0.156828227962055
AT3G44990_at 7.73239489179304 8.1003274255159 4.45226269444286 4.55769239487273 7.39139354750374 7.04905342287484 10.1685150783945 10.282986702786 4.01082359595648 9.49954462077044 8.04574502660842 9.5666683111678 9.22192678691266 8.98246414501885 9.65941363040213 9.24430659976518 8.74189023451243 8.88997093362282 7.02714970782491 0.170406697743088 0.171058651943056 0.190634845679216 0.178374714029610 0.187084313842219 0.170697265454082 0.166508232631588 0.168774747232163 0.199129142468761 0.170302108491045 0.169497257537863 0.165155082683155 0.167978212397347 0.166938884578239 0.165155082683155 0.166835501779534 0.166234117925114 0.165155082683155 0.181351308396333 3 3 - 16458274 16458892 16458515 16457960 16459749 - gene protein_coding_gene FALSE TRUE AT3G44990.1 XTR8 (xyloglucan:xyloglucosyl transferase 8); hydrolase, acting on glycosyl bonds xyloglucan endo-transglycosylase Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 31 precursor (EC 2.4.1.207) (At-XTH31) (XTH-31) (AtXTR8) (XTH31) [Arabidopsis Thaliana] (GB:P93046;GB:Q9LXH6); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT2G36870.1); similar to xyloglucan endo-transglycosylase [Carica papaya] (GB:AAK51119.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.505123304690737 -5.15182209179726 0.000328562715497579 1 5.7614023076973 15.4117720281156 -0.505123304690737 0.0910455511495117
AT3G04590_at 5.65067577851562 5.91687826155428 5.94992459374236 5.8099261300083 6.66579824249794 6.34509241096534 6.71395537736419 6.51517796153227 5.83995545089573 5.20776741993784 6.54318627229557 6.16205812295347 6.7747923747612 6.56860819806977 6.20564898252325 6.46953044717602 6.55116629417789 5.66555796152617 5.0823191468048 0.260803624739944 0.253955343026872 0.261074018842702 0.253955343026872 0.254922037287543 0.267920127965441 0.263850347935907 0.258028157376383 0.266499220740717 0.259822792853647 0.260787046132898 0.258637129695873 0.255372110601024 0.253955343026872 0.255090338036537 0.255136443843794 0.268784212787603 0.261671852893319 0.257538754540645 3 3 - 1239539 1240118 1239771.5 1238859 1241646 - gene protein_coding_gene FALSE TRUE AT3G04590.1|AT3G04590.2 DNA-binding family protein similar to DNA-binding family protein / AT-hook protein 1 (AHP1) [Arabidopsis thaliana] (TAIR:AT2G33620.3); similar to SAP1 protein [Antirrhinum majus] (GB:CAA10643.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637)|similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G28590.1); similar to SAP1 protein [Antirrhinum majus] (GB:CAA10643.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.492200704350593 5.15137113502699 0.000328791491076164 1 5.76082084143555 12.0680532216383 0.492200704350593 0.0835027798213094
AT3G26950_at 6.16418433411751 5.93142391451334 5.55558222118201 5.17795398609176 5.37600464469065 5.45331154011219 6.75315278930886 6.07053270164201 6.50563290134772 6.55459019249609 6.48104167661419 6.8697755635712 5.90450037188387 6.68186551419687 6.16640392287469 6.02195404908878 5.92198030044113 6.53799106205546 7.03691912837845 0.229463697590202 0.234075768814001 0.235114839610916 0.243655080532943 0.228365941650382 0.245529338920403 0.23969089421387 0.233454287437389 0.273453266192387 0.233021159484898 0.223924296398249 0.229497319946733 0.223924296398249 0.241423219758755 0.23350058612537 0.228764290364533 0.246181091597526 0.23757851257185 0.227638817806578 3 3|0 -|/ 9942471 9943026 9942735.5 9942375 9944717 - gene protein_coding_gene FALSE TRUE AT3G26950.1 similar to Os11g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067953.1) -0.607484343346463 -5.14739738690717 0.000330814731944805 1 5.75569548629282 12.3213864989564 -0.607484343346463 0.141516718369074
AT3G44970_at 1.63417169436756 1.96562700823446 1.89080848248799 1.82181738483604 3.96928246111424 3.56224739825232 1.16036281181700 1.39887456402883 0.941099918958178 1.97155483244351 1.01492271881888 1.09106923100311 1.33049390289882 1.14417610195323 0.774660073623988 1.18744688435548 1.28333538707457 1.27343148596107 1.18268022026975 0.236860274576825 0.236860274576825 0.243325000303982 0.240660531536972 0.265884979316686 0.280907098527134 0.236860274576825 0.239711475531386 0.240235539883475 0.243675256947403 0.241165397916263 0.236860274576825 0.246957725961347 0.247552913774109 0.244573568600604 0.236860274576825 0.236860274576825 0.240027299636874 0.240472882329224 3 3 + 16444530 16445804 16445266.4 16443428 16445833 + gene protein_coding_gene FALSE TRUE AT3G44970.1 cytochrome P450 family protein similar to CYP708A2 (cytochrome P450, family 708, subfamily A, polypeptide 2) [Arabidopsis thaliana] (TAIR:AT5G48000.5); similar to E-class P450, group I [Medicago truncatula] (GB:ABE90564.1); similar to Os04g0570000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053599.1); similar to OSJNBa0088I22.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41584.3); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) 0.521805114024008 5.14693896882952 0.000331048983693084 1 5.75510403421599 3.42667579085978 0.521805114024008 0.100489163521832
AT1G18460_at 7.83581055418987 8.0158678108263 7.11794726975932 7.5659876144304 7.92313352673564 7.69075534960233 9.11353191917752 8.94894419291265 8.45595139708665 8.53263860282666 8.51543920289465 8.63342037037754 8.47576787504987 8.53987724520997 8.62212412387926 8.32165252380717 8.02477275081829 8.32475634792842 8.68737700932694 0.1494619786035 0.149954487145509 0.184408670048740 0.159067650964792 0.156589331369909 0.151658958217864 0.152968610151477 0.155146292449763 0.174364167278617 0.151505898375866 0.149690430275482 0.154544351557105 0.144911561713887 0.1577951102013 0.158609145957818 0.148979821511086 0.156439223989851 0.159517663572796 0.146242189358519 1 1 + 6355368 6355874 6355598.455 6352463 6356106 + gene protein_coding_gene FALSE TRUE AT1G18460.1 lipase family protein similar to lipase family protein [Arabidopsis thaliana] (TAIR:AT1G73920.1); similar to Esterase/lipase/thioesterase; AB-hydrolase associated lipase re (GB:ABE91610.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain AB-hydrolase associated lipase region; (InterPro:IPR006693) -0.515256021947885 -5.14595025482129 0.000331554815372055 1 5.75382826441407 16.5219382670754 -0.515256021947885 0.0970109165369804
AT3G59040_at 7.7689925495191 7.7823517721627 7.05223670883547 7.21926495080721 8.01085098279851 7.6293410001537 8.17809990449355 8.19237651621746 7.7795560073379 7.64898082108877 6.94283309930489 7.64260949289499 7.05433779937836 7.19883767309181 7.88773103073708 7.31584676391057 7.24045836503519 7.02391099473084 7.7712820287275 0.155169199647957 0.160656055177732 0.154043730853183 0.161793406495178 0.1560253585867 0.167940223059838 0.168984884879537 0.157748430363994 0.168779654260856 0.154934655774896 0.158410697481204 0.158165621941125 0.155391700709968 0.159756004766486 0.156039733021474 0.154512454979406 0.178170230692409 0.156377495089520 0.152202867129506 3 3 - 21832501 21833046 21832843 21832326 21835325 - gene protein_coding_gene FALSE TRUE AT3G59040.1|AT3G59040.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os08g0191900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061174.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE78562.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os08g0191900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061174.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE78562.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.473742037474367 -5.14456517315593 0.000332264808728524 1 5.75204075287023 15.2399861005086 -0.473742037474367 0.0721516739359615
AT2G02570_at 8.73542069103674 8.69492138707707 8.90146441584364 8.51855333846824 9.28597831396792 8.8228151461917 8.16000934837152 7.5772622427414 6.79536187061906 7.64565997428329 8.0544467792248 8.26343175592266 7.98338750764158 8.21266797122055 7.87963500834816 8.18785106021121 8.01826488276603 7.87947944454187 7.81911172081969 0.186721995779091 0.179410648773295 0.190144176946466 0.185386995697358 0.189380862038304 0.187785898749576 0.188741343237394 0.205967562145094 0.222300686903227 0.184115599204671 0.182207658378207 0.182037664170483 0.185000151117266 0.185785140390215 0.191691743575191 0.184672607252421 0.185810800529190 0.193934463841340 0.182097517566344 2 2 - 698378 699244 698863.182 697950 700916 - gene protein_coding_gene FALSE TRUE AT2G02570.1|AT2G02570.2|AT2G02570.3|AT2G02570.4 nucleic acid binding similar to Os08g0109900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060814.1); similar to hypothetical protein DDBDRAFT_0192063 [Dictyostelium discoideum AX4] (GB:XP_629067.1); contains InterPro domain Tudor; (InterPro:IPR002999) 0.615075207819227 5.14376329696983 0.000332676586932341 1 5.75100573709850 16.3270231470333 0.615075207819227 0.145033374866663
AT3G16470_at 5.53422043534296 5.82264163469015 1.66858854617808 1.92878401561714 1.7642583733088 1.75593847162955 4.99852066668919 4.88511742194977 1.93565344852690 4.4639662791884 5.27902646840145 7.29577048795971 5.69560149997652 6.47234520647556 6.59710163772463 5.88599020553276 5.08747394115865 6.09682576820588 3.98350033018923 0.294388700664795 0.282250203444798 0.312486122307171 0.306049145482918 0.312803045190638 0.305146992857286 0.282714257840613 0.282250203444798 0.318393962145845 0.287360049987615 0.293514211157118 0.283689917877418 0.282250203444798 0.291950579936797 0.289498210690698 0.282250203444798 0.283488615973744 0.291381367987517 0.286932300491855 3 3|0 -|/ 5596103 5596747 5596456.5 5595902 5598050 - gene protein_coding_gene FALSE TRUE AT3G16470.1|AT3G16470.2 JR1 (Jacalin lectin family protein) JA-responsive gene Identical to Myrosinase-binding protein-like At3g16470 [Arabidopsis Thaliana] (GB:O04309); similar to MBP1 (MYROSINASE-BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52040.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.470252902678371 -5.14019340693386 0.000334516364563746 1 5.74639652448746 8.30091215629116 -0.470252902678371 0.0700428970709446
AT4G19390_at 7.08779935004373 7.69188135542096 6.81753072528885 7.05877684163509 7.3465390069787 6.7524971380558 3.61253289890831 4.62045482620160 3.84149671357224 3.802132208572 3.76719944853226 4.42179130794503 4.2205375920557 4.65596929610722 3.53878282765816 4.22357078391973 3.68684081314157 3.89768182920555 3.23833147413964 0.241308377731214 0.243426911785031 0.253978339745804 0.247133892192960 0.246933047299072 0.252894385007611 0.243571627591439 0.246304559100107 0.246140317273564 0.249261127246142 0.241720649363022 0.241288418272546 0.245680147077344 0.240362907641852 0.245479486031455 0.240362907641852 0.283469363351943 0.250086759119596 0.251387382276856 4 4|0 -|/ 10574918 10576100 10575327.2 10574779 10576439 - gene protein_coding_gene FALSE TRUE AT4G19390.1 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G13720.1); similar to Os07g0656700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060506.1); similar to Os06g0710300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058543.1); similar to Uncharacterized protein UPF0114 [Thiomicrospira denitrificans ATCC 33889] (GB:YP_393149.1); contains InterPro domain Uncharacterized protein UPF0114; (InterPro:IPR005134) 0.832447712785995 5.13373466403285 0.000337872391591263 1 5.73805158687058 10.2129349525243 0.832447712785995 0.231654667225498
AT1G67070_at 2.488400439497 2.82165818707027 3.63021778378447 3.86304410621551 2.53783628356801 2.84187322834827 2.99018740072825 3.06689941805526 1.60213233739612 2.48416391673099 2.63407876101574 2.90814656984589 2.53211066830673 2.59168681097928 2.357450142375 2.62845276266193 3.62561531818029 2.42503691362378 2.18444155973601 0.209957952897635 0.213521094618699 0.218320025905112 0.214454317181842 0.217055997050273 0.217075659848056 0.212882042140770 0.220037237234139 0.211691350203617 0.216073458212435 0.213875991328805 0.223093349164147 0.214693871999 0.214855537304640 0.209584113700197 0.209584113700197 0.228561587126984 0.215401073379865 0.220505085285586 1 1 + 25047423 25048050 25047684.909 25045798 25048306 + gene protein_coding_gene FALSE TRUE AT1G67070.1 DIN9 (DARK INDUCIBLE 9); mannose-6-phosphate isomerase encodes a protein similar to phosphomannose isomerase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. similar to MEE31 (maternal effect embryo arrest 31), mannose-6-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT3G02570.1); similar to phosphomannose isomerase [Cyamopsis tetragonoloba] (GB:AAX31279.1); contains InterPro domain Mannose-6-phosphate isomerase, type I; (InterPro:IPR001250); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.49951639728029 5.1335801741129 0.000337953101614679 1 5.73785188825846 5.43154869657236 0.49951639728029 0.0888483643788315
AT4G17390_at 8.81957118244374 8.98475447456289 8.17546241245219 8.15652091585874 8.10303429562326 8.07571361072185 8.99180320664923 9.29954956984494 8.93711957646946 9.08973555104718 9.17683196649077 9.6082348630826 8.73391691770064 8.81336807559846 9.92680031393558 8.662970838243 8.42011695423207 8.51595755882273 8.97226824101578 0.118037788741851 0.118063596012477 0.117507809258331 0.119906817481388 0.113479975635687 0.125133944241789 0.117921639012810 0.116852018972823 0.120274021304054 0.113425221257608 0.110267835509307 0.120948386121302 0.119075926232442 0.110267835509307 0.112823753013533 0.114226589688988 0.127304150677105 0.122858749459139 0.111900923144103 4 4|0 -|/ 9714431 9715358 9714817.9 9714104 9715624 - gene protein_coding_gene FALSE TRUE AT4G17390.1 60S ribosomal protein L15 (RPL15B) Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15 (RPL15A) [Arabidopsis thaliana] (TAIR:AT4G16720.1); similar to 60S ribosomal protein L15 [Brassica oleracea] (GB:ABD65137.1); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Ribosomal protein L15e; (InterPro:IPR000439) -0.45683495160438 -5.13287911818887 0.000338319610352819 1 5.73694562702803 17.5667924462816 -0.45683495160438 0.0607169246804937
AT4G28660_at 9.43089532757968 9.234353938076 8.7756120688449 8.72707128073379 8.67497025555537 8.51131311500469 10.7024070759264 10.7059855412436 9.8248865557701 9.76190622951565 10.0503075923148 10.5525600011151 9.84642407476644 10.0876359953041 10.8757361812849 10.0206617725770 9.6748272443221 10.0152828889451 9.42653165172392 0.102057115016109 0.0992874405519455 0.103754893696509 0.102095824071113 0.109264087438788 0.106063485096845 0.098066793304391 0.099692705153072 0.0993161123774716 0.0999639335496359 0.097410732562743 0.097538952084276 0.0985955420294514 0.100788094324895 0.102325415918754 0.097877195750972 0.108341631768261 0.101655063540626 0.105586981463103 4 4|0 +|/ 14150016 14150710 14150468.111 14149922 14151110 + gene protein_coding_gene FALSE TRUE AT4G28660.1 photosystem II reaction centre W (PsbW) family protein Similar to PsbW subunit of photosystem II. Identical to Photosystem II reaction center PSB28 protein, chloroplast precursor (Photosystem II protein W-like) (PSB28) [Arabidopsis Thaliana] (GB:Q8W0Y8;GB:Q9M0G6); similar to putative photosystem II protein reaction center W [Oryza sativa (japonica cultivar-group)] (GB:BAD87310.1); contains InterPro domain Photosystem II protein PsbW, class I; (InterPro:IPR005610) -0.438423733756463 -5.12704185204059 0.00034138770625499 1 5.7293963103915 19.2510948826198 -0.438423733756463 0.0450544721266295
AT4G11980_at 5.99466421754536 6.0620903417132 5.11293576516536 5.10307755208437 5.60883312873522 5.73890516533306 6.03675728498245 6.51774503064919 5.32077227287945 6.03730831020151 5.2081600267875 5.6285360707669 5.40868523246526 5.84292642237907 5.63367710929013 5.49014656133451 5.12952145789358 5.3757373656027 5.7242695516423 0.201063352439314 0.198575268154604 0.195739520524719 0.199014146837999 0.200788255558083 0.199715778039570 0.197838322842307 0.195746829197924 0.193259139361980 0.1982975202091 0.196157206878803 0.192774730248982 0.199131955796984 0.195331744107295 0.198708937838561 0.192859195635900 0.200504379028630 0.200085765196528 0.198072508494719 4 4|0 -|/ 7183847 7184801 7184339 7183644 7185569 - gene protein_coding_gene FALSE TRUE AT4G11980.1 ATNUDT14 (Arabidopsis thaliana Nudix hydrolase homolog 14); hydrolase Identical to Nudix hydrolase 14, mitochondrial precursor (EC 3.6.1.-) (AtNUDT14) (NUDT14) [Arabidopsis Thaliana] (GB:Q9SZ63;GB:Q941C3); similar to ADP-sugar diphosphatase [Solanum tuberosum] (GB:CAJ55406.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.495659623326252 -5.12587250542651 0.000342005856953487 1 5.72788326192875 11.3512713069707 -0.495659623326252 0.0870297070760146
AT1G13340_at 5.43448585250844 6.16344691732241 7.5657426827708 7.33546426784471 4.43164454551652 5.00604666750614 2.29123834633066 2.91284652733212 3.58881105474044 3.0406585231496 2.82648485643176 2.58583977555123 2.8047914145401 3.37327490517661 1.99501014524551 2.46474969443568 2.67075570723987 2.76319979809735 2.63587426460839 0.268389507838258 0.266406523816939 0.259646112579710 0.265379089868944 0.275856377159042 0.261214454976869 0.249441762330238 0.251712174156364 0.252094436846783 0.249441762330238 0.26321916459808 0.251559773596034 0.256759406114765 0.250937312875658 0.263742345233888 0.249441762330238 0.251281151975637 0.261450989514632 0.250430657092736 1 1 - 4569620 4570172 4569960.545 4569445 4571115 - gene protein_coding_gene FALSE TRUE AT1G13340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34220.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95057.1); similar to Os03g0710000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051046.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.74064273481321 5.12482786017107 0.000342559089764800 1 5.72653135997928 8.0295950931861 0.74064273481321 0.197369349418680
AT1G74660_at 1.60007051109114 1.85311137267694 2.40306050701259 2.86250574620127 2.76231337746571 2.59285019416418 2.26136650241847 2.02288967625457 2.09219526508660 1.98797493226826 2.11916217752834 1.82426809463128 2.55971624235177 2.94649042025834 2.17653232819416 2.69716002647643 2.62239031105789 2.7720671146779 2.32082659899244 0.216623765476277 0.210728411215573 0.214826210044693 0.226171139558622 0.212894362715009 0.227248946171743 0.215401231202982 0.210728411215573 0.215291977234241 0.217525546844206 0.214978640666900 0.229082223513657 0.212654631863388 0.216970430571921 0.216108507431768 0.210728411215573 0.220991975228554 0.213271729930765 0.217518358541098 1 1 - 28051406 28051642 28051540.364 28051237 28051788 - gene protein_coding_gene FALSE TRUE AT1G74660.1 MIF1 (MINI ZINC FINGER 1); DNA binding / transcription factor Constitutive overexpression of MIF1 caused dramatic developmental defects, seedlings were non-responsive to gibberellin (GA) for cell elongation, hypersensitive to the GA synthesis inhibitor paclobutrazol (PAC) and abscisic acid (ABA), and hyposensitive to auxin, brassinosteroid and cytokinin, but normally responsive to ethylene. similar to MIF3 (MINI ZINC FINGER) [Arabidopsis thaliana] (TAIR:AT1G18835.1); similar to zinc finger homeodomain protein 1 [Physcomitrella patens] (GB:AAZ07989.1); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) 0.525940340607622 5.12358897261541 0.000343216420345217 1 5.72492782988461 4.59396545500033 0.525940340607622 0.103934932875780
AT1G44130_at 2.21673778344503 2.34117713793987 3.55633583694633 3.08038655112487 2.1025385006006 1.69562639529536 1.02983554442264 1.09131417394890 0.94528479208687 1.59123300752087 1.51360442472023 1.13588442111277 1.14257960161726 1.68919789202420 0.98922512363367 1.52101951583441 1.53785423909676 1.72668454636117 1.26391414085913 0.246726055852041 0.255104201487183 0.264144784318347 0.277273413842451 0.2434518455805 0.243032964876335 0.246148923976287 0.246712981829421 0.244937692466261 0.246856705515348 0.243032964876335 0.243032964876335 0.243032964876335 0.246363977798217 0.246827322525556 0.243032964876335 0.243177151464421 0.243032964876335 0.247530487722078 1 1|0 -|/ 16789975 16790846 16790445.2 16789948 16791758 - gene protein_coding_gene FALSE TRUE AT1G44130.1 nucellin protein, putative similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G77480.2); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE92379.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.539575617390226 5.12259802258916 0.000343743161754850 1 5.72364501434529 3.47615242415162 0.539575617390226 0.110994023487336
AT4G38630_at 9.49425639820963 9.49929986084767 9.85050839770818 9.89287673429683 9.69004564737936 9.82009326320275 9.21696837764424 9.24612048675738 9.07303417697497 8.87157575615416 9.4910612424543 9.22884959399718 9.35780949763171 9.21492444688045 9.23418211138092 9.25207646934057 9.2721617701053 9.1792761510186 8.7094773820473 0.0781296876369403 0.0756327331276698 0.0785323929168381 0.0808086162609616 0.0764466174652682 0.0753251196274047 0.0743557992137683 0.0825687398250834 0.0805687795014898 0.0803644081289105 0.0779141057743025 0.0771105304509076 0.0786907333413151 0.0819989744166846 0.0789361409846872 0.0749722748769622 0.081918493297577 0.0772632834850652 0.0825930182235961 4 4|0 -|/ 18057502 18058247 18057993.111 18057124 18059534 - gene protein_coding_gene FALSE TRUE AT4G38630.1 AT-MCB1 (MULTIUBIQUITIN CHAIN BINDING PROTEIN 1) Arabidopsis thaliana multiubiquitin-chain-binding protein Identical to 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit S5A) (Multiubiquitin chain-binding protein) (MBP1) [Arabidopsis Thaliana] (GB:P55034); similar to 26S proteasome regulatory subunit S5A [Mesembryanthemum crystallinum] (GB:AAC19402.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.421658309203852 5.12025857226757 0.000344990101512109 1 5.72061582319145 18.6705153617941 0.421658309203852 0.0242169831903540
AT1G49200_at 2.89738078665857 3.41829634647882 2.65521265611608 3.21677671274938 3.87602403443175 3.86332044148983 3.39233618586551 3.58319346227405 5.29683041629927 4.16225873115492 3.32981131159076 3.24801760212168 3.93396270409009 3.49518379553371 3.64009949913850 5.13666374333171 3.82964141565879 3.5996087447573 5.66969147873623 0.270332421417803 0.267105293459619 0.268565488678596 0.275077056772611 0.264662086666187 0.271052915761144 0.265405090027823 0.266576702401164 0.287954632692077 0.264293176171838 0.271010697968836 0.270018777043023 0.263901147921419 0.263901147921419 0.264742355696749 0.271868429173914 0.283416279175832 0.272577040375116 0.263901147921419 1 1 + 18202078 18202594 18202337.091 18201895 18202836 + gene protein_coding_gene FALSE TRUE AT1G49200.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1I (ATL1I) [Arabidopsis Thaliana] (GB:Q94BY6;GB:Q9M9C0); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49210.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE81190.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.593135753745736 -5.11856231752557 0.000345897210801937 1 5.71841884601768 7.77259281697031 -0.593135753745736 0.136624995721502
AT1G08830_at 11.6543003628019 11.6697334238955 12.3934755993758 12.2656964717565 11.7255989823652 11.4330730773839 11.3127171957863 11.2921490565915 10.3877178223008 11.2461567206224 12.0191452819812 10.7907294869668 10.7619966673440 11.3872839960218 12.6036662284566 10.5348124193523 11.0193534617335 11.7970964021445 11.1819940707422 0.0531249736832691 0.0533416074437843 0.0532046079781952 0.0539931497558338 0.0542919229133249 0.0534694596644161 0.0543098378173818 0.0534149156196565 0.0558194481990683 0.0547395708021648 0.0532642669654398 0.0532798937978898 0.0564067511238902 0.0540799965313005 0.0535030828832787 0.0539518434534355 0.0525077500826058 0.0527050307268878 0.0528008658314526 1 1|0 +|/ 2827744 2828757 2828163.625 2827064 2829318 + gene protein_coding_gene FALSE TRUE AT1G08830.1|AT1G08830.2 CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase|CSD1 (copper/zinc superoxide dismutase 1) Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Identical to Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) (SODCC) [Arabidopsis Thaliana] (GB:P24704;GB:Q9FRQ6); similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn superoxide dismutase [Raphanus sativus] (GB:AAD05576.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) 0.4489368223649 5.11770787226154 0.000346355100684085 1 5.71731197870732 22.8697847033555 0.4489368223649 0.0554207765560921
AT1G27700_at 4.54366309048719 4.35983460299210 3.57616468812279 3.58756143706208 4.45957266343506 4.12790720551673 5.52215272760223 5.39363989445782 4.82275420957334 4.73130356436889 4.87023857852906 5.17350817445861 4.70897389487555 4.83387693892418 5.17067978392486 4.64246057632085 4.49403834824726 4.82699710480622 4.7172173008883 0.204791263780273 0.207996688094768 0.203179702299046 0.205884878633758 0.201839696216102 0.201757369914268 0.205364548066813 0.201757369914268 0.213771651265385 0.215522776990059 0.206876636977152 0.205458047776296 0.206785264049145 0.201757369914268 0.207511912619566 0.202808065953712 0.208687774130571 0.211867040293884 0.213140951050722 1 1|0 -|/ 9640530 9641133 9640828.3 9640185 9641888 - gene protein_coding_gene FALSE TRUE AT1G27700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30240.1); similar to t-snare [Medicago truncatula] (GB:ABD33270.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.46700804847501 -5.1161026606937 0.000347217056910283 1 5.71523219735144 9.24490622202 -0.46700804847501 0.0693170500092286
AT1G20440_at 11.2280304520929 11.3641103948687 10.7623986273269 11.0029290847348 11.6953264344993 11.6603000725755 10.7142031936890 11.0792513213121 9.41917978109273 9.79820917143968 10.3502639038524 10.0218264036366 10.7595590229674 10.5009880591897 9.54917703582245 11.0920860122972 10.3818454596757 10.4255785306863 9.5966386215384 0.100494208220965 0.0989726487345402 0.101683351083439 0.099181667645344 0.0989780907106438 0.104297595375153 0.103507977949042 0.101090334660804 0.108751097506984 0.0978769710406834 0.0982188444632032 0.0992974647026283 0.0988085008978982 0.0959140836775346 0.103042531351303 0.0980992007945271 0.105913764420369 0.0972294110558638 0.100784573262337 1 1|0 -|/ 7084821 7085349 7085015.1 7084399 7085762 - gene protein_coding_gene FALSE TRUE AT1G20440.1 COR47 (cold regulated 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. Identical to Dehydrin COR47 (Cold-induced COR47 protein) (COR47) [Arabidopsis Thaliana] (GB:P31168;GB:Q39059); similar to ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) [Arabidopsis thaliana] (TAIR:AT1G20450.1); similar to dehydrin cor29 [Capsella bursa-pastoris] (GB:AAS55384.2); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.482164704892889 5.11453586174197 0.000348060578249214 1 5.71320173850822 21.1832394034072 0.482164704892889 0.0794657581965886
AT3G62660_at 7.97220768637048 8.49844378126673 7.92925927919811 8.49676941330034 9.0878795832148 8.83856418209595 7.7699321398178 8.15383148048265 9.23164072372684 8.06793871157292 9.767722489829 9.24092026761652 9.66449398109528 9.86984363582156 9.07706863670299 9.36942566976286 8.65597823801686 9.30830793286018 8.4639594163074 0.135992177882044 0.134902971905809 0.142920840162528 0.143405875964881 0.133899602783093 0.144034266597509 0.151373063517384 0.14357581474847 0.150377957327529 0.156573959394866 0.133883435042165 0.129903385506461 0.134564899841584 0.134209124661921 0.136635127988688 0.130520690121652 0.140250976485148 0.131166277528519 0.139861301763047 3 3 + 23184933 23185425 23185164.818 23183782 23185738 + gene protein_coding_gene FALSE TRUE AT3G62660.1 GATL7 (Galacturonosyltransferase-like 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL5, transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G02720.2); similar to Glycosyl transferase family 8, putative [Medicago truncatula] (GB:ABE91008.1); similar to Os03g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049861.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.635444082530995 5.10940365307517 0.000350838851799685 1 5.70654767619702 17.3218941383845 0.635444082530995 0.15560771413455
AT1G19770_at 9.9994951170522 10.2220084015952 10.2249273596520 10.2539910037021 10.6978621850080 10.6390838712501 9.80967455512175 10.1238527394057 10.5257108362926 10.0231483535860 10.8600326378035 10.5884197216472 10.8108341333095 10.7849996044226 10.3512072225492 10.8428924181688 10.5091318629859 10.8269986906295 10.0035556054049 0.0756043467644568 0.0768624841971251 0.080599921985509 0.0789364590731502 0.0774657579887833 0.077170685600773 0.0829783466039447 0.0767494856072548 0.0764079565541243 0.0777268100561843 0.0769676368844325 0.075681666004959 0.0756043467644568 0.0765868520461957 0.0782824014210991 0.0756043467644568 0.0781832835321744 0.0773610058136708 0.0780682795450173 1 1 + 6833125 6833627 6833379 6832341 6833828 + gene protein_coding_gene FALSE TRUE AT1G19770.1 ATPUP14 (Arabidopsis thaliana purine permease 14); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP15 (Arabidopsis thaliana purine permease 15), purine transporter [Arabidopsis thaliana] (TAIR:AT1G75470.1); similar to Os02g0689200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047783.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD07671.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.463942336477179 5.10932266836106 0.000350882879922837 1 5.70644263916284 20.6868383048654 0.463942336477179 0.0675843667742777
AT4G31780_at 9.10634297529449 9.1574236567451 8.69123858031021 8.8855295105731 8.95105976516293 8.95398603885039 9.79467644788215 9.7706173350769 9.59321628453463 9.60910931245924 9.38712340832423 9.43417037771406 9.29447988810556 9.42074042248117 9.3249206629247 9.61618843996182 9.23028132894185 8.96264830761058 9.60662361780991 0.101916339337211 0.0986270542264987 0.100981178940453 0.101796157116443 0.0966012419651997 0.101478349258809 0.103443203789594 0.101297138586035 0.100433368081263 0.0970475533303946 0.098283686513435 0.0991309851890167 0.100572795868235 0.0987471252419089 0.105150424305299 0.0998472944344938 0.102323046467900 0.104878708603576 0.0999475368910619 4 4|0 +|/ 15376087 15376932 15376563.2 15374005 15377140 + gene protein_coding_gene FALSE TRUE AT4G31780.1|AT4G31780.2 MGD1 (MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A); 1,2-diacylglycerol 3-beta-galactosyltransferase/ transferase, transferring glycosyl groups|MGD1 (MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A); 1,2-diacylglycerol 3-beta-galactosyltransferase Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis. similar to MGD2 (monogalactosyldiacylglycerol synthase 2), 1,2-diacylglycerol 3-beta-galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G20410.1); similar to MGDC (monogalactosyldiacylglycerol synthase type C), 1,2-diacylglycerol 3-beta-galactosyltransferase [Arabidopsis thaliana] (TAIR:AT2G11810.1); similar to monogalactosyldiacylglycerol synthase [Cucumis sativus] (GB:AAC49624.1); similar to MGDG synthase A [Spinacia oleracea] (GB:CAB56218.1); similar to MGDG synthase type A [Nicotiana tabacum] (GB:BAB11980.1); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235); contains InterPro domain Monogalactosyldiacylglycerol synthase; (InterPro:IPR009695)|similar to MGDC (monogalactosyldiacylglycerol synthase type C), 1,2-diacylglycerol 3-beta-galactosyltransferase [Arabidopsis thaliana] (TAIR:AT2G11810.1); similar to monogalactosyldiacylglycerol synthase [Cucumis sativus] (GB:AAC49624.1); similar to MGDG synthase A [Spinacia oleracea] (GB:CAB56218.1); similar to MGDG synthase type A [Nicotiana tabacum] (GB:BAB11980.1); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235); contains InterPro domain Monogalactosyldiacylglycerol synthase; (InterPro:IPR009695) -0.427987798559381 -5.10927954439564 0.000350906327071657 1 5.70638670697352 18.6322603767915 -0.427987798559381 0.0350176467509204
AT3G48930_at 9.36169770484938 9.70868090688795 8.95243918000726 8.93706352410207 9.01248689038904 8.74822076231269 9.57660386370094 9.96932371843826 9.22937202557684 9.08459114489575 8.99163731867863 9.27641358651838 8.85885342550069 8.66745953402671 9.45986209230981 8.67888994210209 8.0402672368793 8.63068195866198 9.05816264850224 0.117789213942959 0.118447180221265 0.114827258509253 0.118071176554613 0.117660342174212 0.130179871371782 0.118789732606167 0.128072601594684 0.124917660886372 0.116196786265504 0.118411815086202 0.118977746673937 0.129510330130071 0.125979391815274 0.117055929708122 0.119626399234344 0.139378927656575 0.122755652602235 0.115754531274016 3 3|0 -|/ 18152037 18153014 18152380.889 18151756 18153266 - gene protein_coding_gene FALSE TRUE AT3G48930.1 EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G23740.1); similar to ribosomal protein S11 (probable start codon at bp 67) (GB:AAA32866.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) -0.520028881044972 -5.1089078479894 0.000351108492812829 1 5.70590459938364 18.2580896070824 -0.520028881044972 0.101602281651345
AT3G29770_at 2.37552324798578 2.18826012040219 1.75503154723857 1.83483949861086 1.78455087622817 1.81676563618516 2.68825563264223 2.65908140574446 3.00806018850159 2.38019026702991 2.76981076280591 2.47188353181421 2.51969729378204 2.43042354053655 2.36909774254502 2.39423284622743 2.55998341429946 2.93151849843603 2.81176441412888 0.204067024537999 0.197840771221587 0.204437762387464 0.210446640842494 0.207058479943369 0.203387825977361 0.199471080185372 0.208314260095369 0.209308564460011 0.199166987715916 0.197840771221587 0.199782710168591 0.203785585259678 0.19921412515251 0.201378373735638 0.197840771221587 0.206098696076591 0.20549415377648 0.205833963474323 3 3 + 11652479 11653017 11652773.727 11650820 11653318 + gene protein_coding_gene FALSE TRUE AT3G29770.1 hydrolase, alpha/beta fold family protein similar to SP1L1 (SPIRAL1-LIKE1), hydrolase [Arabidopsis thaliana] (TAIR:AT1G26360.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -0.428745274104467 -5.10879229451362 0.000351171367504242 1 5.70575471607401 4.78237311747599 -0.428745274104467 0.0360210338863661
AT4G02250_at 1.06093039279701 0.912507533632739 0.559077880300569 0.832134151244508 0.569601288443138 0.684336225029218 1.05530000971206 1.05683912667131 2.52998351200292 0.945984867439776 0.803658204324358 1.16210176147475 1.02966843772767 0.831724353464411 0.586816160124692 0.894499973276058 1.32877560153560 0.801010382671905 0.934771101608787 0.194792683786353 0.193521104947432 0.190406934755478 0.193125853617180 0.192561579653092 0.189268011886080 0.197762670233072 0.193069259978494 0.196124705827924 0.191593945716878 0.194400080387951 0.190968706944141 0.193741060046571 0.190758873840133 0.199116358845476 0.190527306212312 0.19173035081113 0.192276991888590 0.189268011886080 4 4 + 984178 984483 984311.455 983970 984523 + gene protein_coding_gene FALSE TRUE AT4G02250.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G55770.1); similar to Pectinesterase inhibitor [Medicago truncatula] (GB:ABE88377.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.45028575690391 -5.10686718918069 0.000352220607608626 1 5.70325732747062 2.0413550024832 -0.45028575690391 0.0573319280038093
AT4G30990_at 2.50423101766331 2.72744728074122 2.12357905051504 2.08966183893576 2.39016933460698 2.47191325502766 3.12023690759242 2.87394942059106 1.86334887616565 2.1718667131118 1.84218011870584 1.80773162474429 1.91679021138084 1.17537150884029 1.76526704340909 1.99959203521955 1.76373148439058 1.08447243835917 2.07759951997924 0.220867349351637 0.228085565632545 0.223042264622704 0.227336773223135 0.224895530608745 0.220867349351637 0.229918475489465 0.241170428807277 0.222996302930408 0.224647773689965 0.221819590798891 0.220867349351637 0.222175183111694 0.230810688313274 0.229875634464245 0.221633175592583 0.228073063788114 0.22602468502969 0.227877511061547 4 4 + 15095314 15095891 15095623.545 15084691 15095956 + gene protein_coding_gene FALSE TRUE AT4G30990.1 binding similar to Down-regulated in metastasis [Medicago truncatula] (GB:ABE89978.1); contains InterPro domain Down-regulated in metastasis; (InterPro:IPR011430); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.452924132581668 -5.10593751188435 0.000352728498100107 1 5.70205104314105 4.39114706048423 -0.452924132581668 0.0595256406896727
AT4G21750_at 7.1305290788101 7.08614584820497 6.9962095217907 6.88303422386824 7.3679574684125 7.2704246188408 7.37346456956214 7.49582311394478 8.02151565927772 7.56750021400354 9.35792542795399 9.30995846973166 9.30500900495841 9.0614077587846 8.8896116404431 8.44996212336159 8.03580971615803 8.74819749003788 8.1083402987134 0.178221795873025 0.177460379354524 0.183568786569152 0.180269857447930 0.181423836283563 0.17755374646758 0.176986762544799 0.170240316366151 0.185964565815851 0.170240316366151 0.176690735845733 0.179357733973530 0.175603166012824 0.191351398801963 0.179992314552342 0.170240316366151 0.187785150474221 0.178261973134367 0.172941061889041 4 4 + 11559489 11560219 11559966.636 11555198 11560745 + gene protein_coding_gene FALSE TRUE AT4G21750.1|AT4G21750.2 ATML1 (MERISTEM LAYER 1); DNA binding / transcription factor|ATML1 (MERISTEM LAYER 1); DNA binding encodes a homeobox protein similar to GL2. expression is limited to the L1 layer in the embryo and shoot apical meristem. Expression is detected starting the two-celled stage of embryo development. Double mutant analysis with PDF2, another L1-specific gene, suggests that PDF2 and STEM1 functions are partially redundant and the absence of both of the genes result in abnormal shoot development. similar to ANL2 (ANTHOCYANINLESS 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00730.1); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05230.2); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to homeobox protein (GB:AAB37230.1); similar to A20 (GB:AAB49378.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.426766142763999 5.10143452486945 0.000355199518888048 1 5.69620608461353 15.5973755193927 0.426766142763999 0.0342905051506808
AT2G43010_at 9.43481703081533 9.23797701501494 9.69903171347464 9.60789596372944 10.2734706096061 9.78429604152792 9.62775513596772 9.69159057661939 9.81168063405112 9.34620793891 10.5888887519885 10.4160715338805 10.5796372788138 10.3044243450783 10.1764034126241 10.2186603431287 9.94897505133966 9.8271021399273 9.62028896161486 0.101822203330413 0.103525929809415 0.101822203330413 0.106951630800156 0.104334619193506 0.109522478954716 0.107790996437934 0.102698235795383 0.11140546663884 0.109511043968570 0.102282825714304 0.101822203330413 0.103742281102705 0.107050788046999 0.104212268288635 0.101822203330413 0.113898156465431 0.111986235851104 0.104649219752360 2 2 + 17894492 17894858 17894661.6 17893504 17896127 + gene protein_coding_gene FALSE TRUE AT2G43010.1|AT2G43010.2 PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription factor Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Identical to Phytochrome-interacting factor 4 (Basic helix-loop-helix protein 9) (bHLH 9) (AtbHLH009) (Short under red-light 2) (BHLH9) [Arabidopsis Thaliana] (GB:Q8W2F3;GB:Q9C5I8;GB:Q9SKX6); similar to PIL6 (PHYTOCHROME-INTERACTING FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G59060.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99197.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.503966577359566 5.10037801718117 0.00035578193032573 1 5.69483419106121 19.5947273618226 0.503966577359566 0.0932599977850162
AT3G28750_at 1.33043937911759 1.31418284278930 1.63370542181483 1.33791626361860 1.05205944673701 1.39942084524832 1.46198833737657 1.40783871374571 4.25666283824404 1.31805482166165 1.18087040055137 1.35976713138761 1.36662710283990 1.43450279048766 1.40799306500523 1.17745891955663 1.40743894226430 1.37049394459632 1.25586843527178 0.183920176447861 0.187008005394002 0.189289543348193 0.194178919699694 0.186819250591592 0.188787982881371 0.186003749148733 0.188837490010675 0.211329624140869 0.184599354931030 0.187606803001427 0.186642880604565 0.194776960368884 0.200485473277886 0.201961130128234 0.188691253595884 0.187160163765855 0.189646137953344 0.198589971187922 3 3 - 10793016 10793565 10793242.455 10792828 10794081 - gene protein_coding_gene FALSE TRUE AT3G28750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39880.1); contains InterPro domain Globin-like; (InterPro:IPR009050) -0.480777409271146 -5.09827951365303 0.000356941755086881 1 5.69210865332247 3.17469694071196 -0.480777409271146 0.0795576585320231
AT1G30090_at 8.02872955074892 7.95025351119618 8.03314966010336 8.2916810341236 8.62521424508836 8.3486848850201 7.74785287497677 7.95087283678396 7.41347228164677 7.49067804863562 8.1385444166596 7.88797451650141 7.92389388820026 8.02766040906236 7.30136085131825 8.01232882928072 7.88178108396075 7.41275101827443 6.93660502056518 0.157162650874096 0.159043891731145 0.16589675780489 0.155192137508042 0.168833313180756 0.162553889497237 0.155192137508042 0.161893641547897 0.182313812365414 0.158802913223323 0.158434950962716 0.155192137508042 0.163396110211837 0.163680693563617 0.163173368326031 0.156360694734787 0.168260779850063 0.170742771502694 0.176685918204462 1 1 - 10559763 10560244 10560005.182 10559545 10561407 - gene protein_coding_gene FALSE TRUE AT1G30090.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G24540.1); similar to Os07g0153400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058912.1); similar to TO42-3rc [Taraxacum officinale] (GB:ABA26994.1); similar to Os06g0655500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058250.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.474145177849381 5.09352528437048 0.000359584214495456 1 5.6859309320414 15.6738241548917 0.474145177849381 0.0755681492253305
AT4G17350_at 5.87626091057116 5.98961754881586 5.72258671138392 5.48622190263067 5.69822040336003 5.03634911590843 6.63763947067843 6.57139286628878 6.54410094293427 6.63957036341718 6.46789973066644 6.19311703317915 6.53024704186426 6.42752843423161 5.23944627659933 6.3379060672824 5.76111973258322 6.06292325525807 6.22492905689475 0.190212574188906 0.193922745759884 0.191417474664857 0.199542820459114 0.195881456145399 0.206566771984257 0.202087233862799 0.204573180978384 0.196258653848328 0.194272943206297 0.188471508487024 0.188824447042759 0.188770918833583 0.202695404009407 0.212599175306980 0.185952141412260 0.198199402420803 0.190265455168534 0.188545022352243 4 4|0 +|/ 9702585 9703335 9702997.5 9701144 9703586 + gene protein_coding_gene FALSE TRUE AT4G17350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47440.1); similar to hypothetical protein 40.t00010 [Brassica oleracea] (GB:ABD65135.1); similar to hypothetical protein 31.t00035 [Brassica oleracea] (GB:ABD65121.1); contains InterPro domain Pleckstrin-like, plant; (InterPro:IPR013666); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Protein of unknown function DUF828, plant; (InterPro:IPR008546) -0.562446586862568 -5.09345876814964 0.000359621331655002 1 5.68584447101576 12.1758145666414 -0.562446586862568 0.123728670678342
AT3G13470_at 7.01247993461408 6.68355945242475 6.10000134523732 6.08546767526036 5.71306751597807 6.16520464053807 8.01411540222285 7.95903337864879 6.62870988824251 7.8153258323225 7.3036626265653 8.46498304692506 7.2978692818216 7.06484660355097 9.48368409811775 7.51393117156653 7.06390910735918 7.25514821910538 7.4558893170656 0.167281262729574 0.170019569693439 0.175070678763144 0.184032430470276 0.178712530477962 0.176630478638835 0.183790880996391 0.174670534680591 0.177694176015124 0.167947925030903 0.167607559352925 0.175339868624250 0.172084597303307 0.179827065257435 0.181196716614457 0.167281262729574 0.178367773644466 0.174220634139626 0.171463499975752 3 3|0 +|/ 4391892 4392487 4392259 4389692 4392858 + gene protein_coding_gene FALSE TRUE AT3G13470.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G55490.2); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P08927); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P21241); similar to chaperonin-60 beta subunit (GB:AAB39827.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.510166245445614 -5.09061311307936 0.000361213060593157 1 5.68214480593476 14.2071058090755 -0.510166245445614 0.097259480027042
AT3G51430_at 9.44749962048632 9.57401211203164 10.2812455047758 10.3274059580466 9.4602344227366 9.45282285469984 7.6668523421189 8.00989720806752 8.57399453823036 7.79801090277222 7.31243093773066 6.58950788324102 7.67927978958502 7.93189240079353 5.68666746055269 8.3798182144962 8.31230341656415 8.10886012079734 7.00351136622766 0.18520295741662 0.183426184731852 0.184538006846216 0.185051258072026 0.184584787268750 0.185838695246050 0.180626666619733 0.184417518100887 0.183699471129403 0.187025242893970 0.186657788637811 0.189838333925848 0.187812018807390 0.180394215790427 0.196189122498637 0.182750678876370 0.18192045659813 0.184002457344938 0.185761902602073 3 3|0 +|/ 19098138 19098848 19098591.5 19097444 19099089 + gene protein_coding_gene FALSE TRUE AT3G51430.1 YLS2 (yellow-leaf-specific gene 2); strictosidine synthase strictosidine synthase-like protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51450.1); similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51440.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.457058978307641 5.09041450788916 0.000361324429402733 1 5.6818865430346 16.9234632347272 0.457058978307641 0.0637891109113991
AT1G65060_at 2.29154838843465 2.74708942434259 2.49436348488673 2.73399493020142 1.54654036803442 2.58478786086968 3.35475175331025 3.23404211945357 4.47501034989876 3.90401574697442 3.47512648448145 4.00376095641957 2.36713327620903 3.00732838699072 4.16728691082507 2.93029550019144 2.12592150669278 3.44325604059242 3.96775172495132 0.208293261138100 0.20318161044834 0.208040695266953 0.207686057004158 0.206028755167558 0.204047496769216 0.206814676111925 0.214097687612929 0.213174829687113 0.203484615226905 0.206354391640595 0.208583301797161 0.210193135688725 0.204364074620654 0.203665144311371 0.20988286083017 0.202467574200320 0.206004988683971 0.20326525981496 1 1|0 -|/ 24171087 24172525 24171914.1 24170865 24175165 - gene protein_coding_gene FALSE TRUE AT1G65060.1|AT1G65060.2 4CL3 (4-coumarate:CoA ligase 3); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. Identical to 4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3) (At4CL3) (4-coumaroyl- CoA synthase 3) (4CL3) [Arabidopsis Thaliana] (GB:Q9S777;GB:Q93Z69); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL1 (4-COUMARATE:COA LIGASE 1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G51680.1); similar to 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] (GB:AAC97389.1); similar to 4-coumarate:CoA ligase [Populus tremuloides] (GB:AAC24504.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (Clone 4CL16) (GB:P31687); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|Identical to 4-coumarate--CoA ligase 3 (EC 6.2.1.12) (4CL 3) (At4CL3) (4-coumaroyl- CoA synthase 3) (4CL3) [Arabidopsis Thaliana] (GB:Q9S777;GB:Q93Z69); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4-coumarate:CoA ligase isoenzyme 3 [Glycine max] (GB:AAC97389.1); similar to 4-coumarate:CoA ligase [Populus tremuloides] (GB:AAC24504.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (Clone 4CL16) (GB:P31687); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.746257617430864 -5.08817535062248 0.000362582566608085 1 5.67897429004535 6.27619291122923 -0.746257617430864 0.201626844873241
AT1G77940_at 10.5170402265342 10.8031843633232 10.1413745605930 10.1845165471688 9.7935742101387 9.87626378060597 10.9163986367057 11.0314717662416 10.6332799666013 10.3669207584800 10.4511279249778 10.9642411318937 10.2191715595818 10.4075638600769 10.8504269731166 10.1135436469570 9.70639266966096 10.0502132636971 10.2609783996027 0.0848182202484195 0.0854229455368807 0.0922335549859648 0.0864916541154797 0.0912635316286883 0.0890436095864529 0.0848965370588427 0.084906163432141 0.0919819350166471 0.0881944847204087 0.0877498229615295 0.0848182202484195 0.0897990388763997 0.0877397053851113 0.0906016278039566 0.0848182202484195 0.0944212188438815 0.092322915220215 0.0870443331737876 1 1|0 -|/ 29309018 29310005 29309514.556 29308791 29310276 - gene protein_coding_gene FALSE TRUE AT1G77940.1 60S ribosomal protein L30 (RPL30B) Identical to 60S ribosomal protein L30-2 (RPL30B) [Arabidopsis Thaliana] (GB:Q8VZ19;GB:Q9SH07); similar to 60S ribosomal protein L30 (RPL30A) [Arabidopsis thaliana] (TAIR:AT1G36240.1); similar to 60S ribosomal protein L30 (GB:O49884); contains InterPro domain Ribosomal protein L30e; (InterPro:IPR000231); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.446574693195307 -5.08620214441321 0.000363695116882837 1 5.67640718756306 20.7908420965672 -0.446574693195307 0.0557598906267893
AT2G14250_at 5.69230202920621 5.45096396048311 5.97248726272433 5.81717916612569 6.10387971821928 6.22377706429682 5.71191032913605 6.23884867986972 4.97013743081598 4.66486194728676 5.47254808205593 5.33320126494000 6.00895735727182 6.04147267757187 5.61576220155405 5.93317242916442 5.0022202898162 5.36870810131405 4.76876343267433 0.256650106016086 0.259160553708331 0.259438385316622 0.255282973391753 0.262759377451757 0.280082676347267 0.255282973391753 0.255282973391753 0.286850391689124 0.274817248162001 0.271073480889745 0.261341484663378 0.256238289537777 0.26338427112712 0.270111191057404 0.255282973391753 0.272469785472389 0.264067092968142 0.261054817012635 2 2 + 6044075 6044402 6044219.375 6044056 6045463 + gene protein_coding_gene FALSE TRUE AT2G14250.1 ankyrin repeat family protein similar to TIP1 (TIP GROWTH DEFECTIVE 1) [Arabidopsis thaliana] (TAIR:AT5G20350.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE84793.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.525787791684887 5.08584570367467 0.00036389647359471 1 5.67594339064327 11.1005483116177 0.525787791684887 0.105889668092746
AT3G50900_at 6.32105497639731 6.37486467698201 5.67683509885282 6.06963692189465 6.75520688159369 6.00398517607627 4.02787172915358 3.36859006546295 5.00777134308527 4.63699961242112 5.72390126474812 6.35032936578824 4.51188470010854 5.70810341913132 5.29985562771712 3.63385116598856 4.55690793193484 4.34196010026782 4.47447841941084 0.278174232819738 0.278343376415087 0.274383828857396 0.282616901066122 0.283908772300329 0.277584007206758 0.286813912664609 0.276457418104083 0.289073305399386 0.275569041864173 0.284480279520954 0.277638971134099 0.293081722025172 0.283545832144491 0.279922506325394 0.274199441073016 0.270077660070566 0.275896902905165 0.270077660070566 3 3 + 18929136 18929421 18929284.091 18929000 18929599 + gene protein_coding_gene FALSE TRUE AT3G50900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66490.1); similar to hypothetical protein [Thellun (GB:ABB45855.1) 0.70637669813011 5.08532627165023 0.000364190117001432 1 5.67526747035481 10.4358885184348 0.70637669813011 0.186078037702794
AT3G25585_at 7.63499460139089 7.79735018173699 8.47069619993143 8.50522741828665 9.13985408138415 8.86345072255643 8.80656420132696 8.88054648790508 6.77303678169589 7.69131352866663 8.08441641808333 7.72506945114141 8.24170989681869 7.91845395826852 6.93938288801337 7.86102234127831 8.01202756941697 7.60450383830029 7.63579074729341 0.196098397031616 0.191555570772302 0.201345986014201 0.199284822012403 0.200700832370065 0.196404482124904 0.201987993783294 0.190386537054232 0.202995131312261 0.196447163132625 0.188372863717154 0.191387437555120 0.193865023588052 0.191469873731377 0.205020008935627 0.188372863717154 0.20016035680924 0.204725355353274 0.203238362656648 3 3|0 +|/ 9298083 9299332 9298632.375 9296546 9299983 + gene protein_coding_gene FALSE TRUE AT3G25585.1|AT3G25585.2|AT3G25585.3|AT3G25585.4 AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds similar to AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1), phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT1G13560.1); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAB53764.1); similar to aminoalcoholphosphotransferase [Brassica rapa subsp. pekinensis] (GB:AAL46934.3); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAD56040.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462)|similar to AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1), phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT1G13560.1); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAB53764.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.448276423364744 5.08527267751568 0.000364220428918086 1 5.67519772726461 16.0948539773400 0.448276423364744 0.0572452520912776
AT1G72500_at 6.80923353561279 6.71357694463433 6.48363005870449 5.87730009056036 7.13943122219365 6.99206430231001 8.19238502215494 7.98138869373107 7.93076943590144 8.5141897487313 8.07613900724295 8.56157619561407 7.72974170626948 8.08132716600655 8.35542799774184 8.41394774498551 7.43847494002221 8.30641058906659 8.77305346276139 0.152222080991902 0.153581633308012 0.153096197254869 0.170242592807401 0.151330300007407 0.165040883581582 0.147416159772246 0.148032750487193 0.159902001966058 0.153186051268174 0.153726464694789 0.149976067098888 0.160240893598609 0.155631520453969 0.147358201994449 0.152931884040421 0.148937514499762 0.151342249778876 0.152563198155255 1 1 - 27299006 27299563 27299193 27298998 27302218 - gene protein_coding_gene FALSE TRUE AT1G72500.1 inter-alpha-trypsin inhibitor heavy chain-related similar to inter-alpha-trypsin inhibitor heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G19110.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE78212.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) -0.543331589010271 -5.07911070774831 0.000367723406965807 1 5.66717559912544 15.2868186758210 -0.543331589010271 0.115185094968829
AT2G45280_at 2.54071082534574 3.1153893466693 3.23680425112695 3.46176642107232 3.60981719428935 3.39716469338337 2.87764696476806 2.69468686647282 1.82647412583889 1.81806966847461 2.34366737947752 2.67336086744725 2.61110685147696 2.65423871608098 1.7275003926456 2.61157003442549 2.58034801937207 2.22948859159683 2.21556221414907 0.253246891982734 0.247757743913530 0.253794746988245 0.254939098292115 0.249719075045732 0.244592599391882 0.244592599391882 0.250992955192484 0.250197289589139 0.248253106172005 0.245900611603259 0.246246215232715 0.247567760722444 0.244592599391882 0.244592599391882 0.244592599391882 0.247984054490752 0.249888047884606 0.249534927655442 2 2|0 +|/ 18678231 18679037 18678692 18677083 18679351 + gene protein_coding_gene FALSE TRUE AT2G45280.1 ATRAD51C (Arabidopsis thaliana Ras Associated with Diabetes protein 51C); ATP binding / damaged DNA binding Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. Identical to DNA repair protein RAD51 homolog 3 (DNA repair-recombination protein RAD51C) (AtRAD51C) (RAD51C) [Arabidopsis Thaliana] (GB:Q8GXF0;GB:O22144;GB:Q8RY30;GB:Q93X07;GB:Q9FT75;GB:Q9FT80); similar to ATDMC1 (RECA-LIKE GENE), ATP binding / DNA-dependent ATPase/ damaged DNA binding [Arabidopsis thaliana] (TAIR:AT3G22880.1); similar to RecA bacterial DNA recombination protein; Rad51, N-terminal [Medicago truncatula] (GB:ABD33114.1); contains InterPro domain Rad51, C-terminal; (InterPro:IPR013632); contains InterPro domain Rad51, N-terminal; (InterPro:IPR010995); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553) 0.547410538115915 5.07701615989294 0.000368922232334645 1 5.66444720323838 5.30788770841742 0.547410538115915 0.117315091003173
AT3G22240_at 7.45996742880321 6.97037677322393 7.56782137423912 7.44080165824328 6.87766874964123 7.12148649521438 5.70022928903931 6.13514435777105 6.70103666990691 6.50320207830324 6.77321615552616 7.53394378114127 7.08711334360695 7.15943869440236 6.75333652849806 7.04394109558837 6.73805550564741 7.22897031794258 6.6181542319454 0.237653999038047 0.244435743629449 0.238233624219796 0.248452925209891 0.239264972319677 0.23211537995695 0.23211537995695 0.233757692830154 0.251152971087581 0.245726227515888 0.23211537995695 0.247569626028502 0.23211537995695 0.23211537995695 0.232833640460170 0.244501445413815 0.23211537995695 0.239154648391484 0.245057484546916 3 3|0 -|/ 7864446 7864483 7864463.667 7863684 7864586 - gene protein_coding_gene FALSE TRUE AT3G22240.1 unknown protein 0.558901354100377 5.07684468070688 0.000369020562438816 1 5.66422379648966 13.7327951430283 0.558901354100377 0.122909171304039
AT4G26250_at 1.56803254413365 1.67485528854392 1.82905267739668 2.04033150368711 1.39318323938072 1.29990766237788 1.72303632898292 1.90663104824573 2.57784597007114 2.44736788401796 1.78940676393123 1.52690467787999 1.49227722931283 1.69963084801451 1.8049968800658 2.09965037271817 1.42424229852306 1.73517437799756 2.49583139005147 0.200780906863733 0.210584798825544 0.201424981800562 0.202903036557417 0.203333007376585 0.210694235388938 0.206474142297179 0.209009357161851 0.203250695426893 0.205433955405818 0.201276335351412 0.198969848048080 0.197425681857657 0.199405855997839 0.209916531262005 0.20198321620004 0.200121634350272 0.201927207768398 0.207085334041797 4 4 + 13290312 13291024 13290641.182 13289650 13291093 + gene protein_coding_gene FALSE TRUE AT4G26250.1 ATGOLS6 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 6); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS5 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 5), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT5G23790.1); similar to galactinol synthase [Cucumis melo] (GB:AAL78687.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.443999841045377 -5.07634886569681 0.000369305030302699 1 5.66357780841487 3.78115404281137 -0.443999841045377 0.0543009013012367
AT3G05590_at 10.6226121446575 10.8466536465805 10.2942392497711 10.3335977115016 10.2365855639673 10.0419037126283 10.9069692834275 11.1392316182133 10.6363192504139 10.7039692972502 10.3357569425163 10.7896411416262 10.4185778955497 10.2570577885376 10.9714160182495 10.0966688627353 10.0077138180795 10.1742606078751 10.5948805996357 0.0810897100469025 0.0795167504760525 0.082029620166255 0.081707172613366 0.0826043740954816 0.0830139834379627 0.0798333606252894 0.078104479305393 0.0882542952848772 0.0862603525893797 0.081071294683383 0.078104479305393 0.0792615422897653 0.0888036224544535 0.0817452128888582 0.0788320829215382 0.0858283365218347 0.0825699235464956 0.0862651342168212 3 3|0 +|/ 1621797 1622694 1622254.1 1621463 1623020 + gene protein_coding_gene FALSE TRUE AT3G05590.1 RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome Encodes cytoplasmic ribosomal protein L18. Identical to 60S ribosomal protein L18-2 (RPL18B) [Arabidopsis Thaliana] (GB:P42791;GB:Q9M9W4); similar to 60S ribosomal protein L18 (RPL18C) [Arabidopsis thaliana] (TAIR:AT5G27850.1); similar to cytoplasmic ribosomal protein L18 (GB:AAA69928.1); contains InterPro domain Ribosomal protein L18e; (InterPro:IPR000039) -0.457977430894873 -5.07396971155731 0.000370673275037550 1 5.66047743950241 21.0659456247581 -0.457977430894873 0.0655761868595827
AT3G03220_at 4.21397347459506 4.45878159241273 3.27374537487562 3.64494879744637 3.55431259361662 3.46601472166269 5.05938072350993 4.99417206841605 4.44803617738811 4.33165646437219 4.44688852069557 5.19319245224724 4.35495489032127 4.53683872271385 5.57272523068516 4.54436872419364 4.27354566391173 4.55575784612738 4.55223153900397 0.214877814562943 0.220186588772156 0.233202203057190 0.218929837589595 0.217718951754002 0.218795150095391 0.223239471995305 0.224303968096516 0.224668174327711 0.223318609552647 0.214158806185178 0.214168172522497 0.223899714773244 0.214158806185178 0.223882214103634 0.220602425305174 0.224786025583343 0.214158806185178 0.221683277183543 3 3 - 742715 743750 743285.545 742361 744054 - gene protein_coding_gene FALSE TRUE AT3G03220.1 ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A13 precursor (AtEXPA13) (Alpha-expansin-13) (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22) (EXPA13) [Arabidopsis Thaliana] (GB:Q9M9P0;GB:Q93YW9); similar to ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) [Arabidopsis thaliana] (TAIR:AT3G55500.1); similar to Expansin 45, endoglucanase-like [Medicago truncatula] (GB:ABE83275.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -0.478006156696279 -5.07384438796493 0.000370745496925376 1 5.66031409726603 8.64754553495859 -0.478006156696279 0.0792604866424888
AT3G18770_at 1.901911309726 1.97334946261754 2.26466164615519 2.01329055272419 1.96876662369779 2.12460551783324 1.77015976016609 1.75391460383001 2.20181413791383 2.01522572690055 2.80244637163575 2.43501913151692 2.45585056351652 2.76491354645265 2.22141624343336 2.98653741077625 2.80288247236354 2.34634259597593 1.66643725508585 0.238130981637486 0.230436101683065 0.235808287669216 0.23133207286713 0.230451096186145 0.227595320056954 0.239249563200242 0.233020433880151 0.237161787365536 0.227595320056954 0.232047436527944 0.23532222825468 0.227595320056954 0.230810345869008 0.239576697658947 0.230012516451017 0.231825862715058 0.233446246575731 0.23634815631220 3 3 - 6460043 6461049 6460473.273 6459890 6463058 - gene protein_coding_gene FALSE TRUE AT3G18770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49590.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE83766.1) 0.441882151504908 5.07267959240237 0.000371417462297151 1 5.65879581007188 4.25287497555656 0.441882151504908 0.0527293052021363
AT3G26280_at 10.6412227378913 10.8164377641561 10.6799079176368 10.8204819628039 11.1526470376478 10.9098544736735 11.0403372193119 11.1216525500898 10.2334267618798 10.6882507453025 9.4748451164056 8.3388568555145 10.5057733430468 9.90980158489138 8.25652203597986 10.1641723133440 10.6112619415369 9.64050082808662 10.5688398172834 0.128335893917184 0.127764303405657 0.127690914377709 0.134160019680876 0.126316783215163 0.132361998190004 0.129168381756410 0.128782195695065 0.140518733534199 0.125468087531521 0.129917027120181 0.145133515355026 0.128557320086716 0.127512094402299 0.144054015189020 0.125427587576589 0.132763905708485 0.142621278087015 0.124999666786527 3 3 - 9631603 9632160 9631864.818 9631437 9633246 - gene protein_coding_gene FALSE TRUE AT3G26280.1 CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B4 (EC 1.14.-.-) (CYP71B4) [Arabidopsis Thaliana] (GB:O65786;GB:Q9LTL1); similar to CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26270.1); similar to CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26220.1); similar to CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26230.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.449156037863151 -5.07160301864474 0.000372039679672022 1 5.65739230175236 20.9525956381544 -0.449156037863151 0.0589458275987599
AT3G61690_at 6.27642003680043 6.24984083624618 6.60876467649877 6.28124147599504 6.19011438504445 6.45009929523816 5.79819113010961 5.35350887708325 5.84170158992318 5.60047854700862 6.25479081115344 6.50624603509887 6.5532977473342 6.33204943037656 6.03048621030762 6.3448090620825 6.43717776179352 5.88928037559144 5.6859704395728 0.193647069526457 0.190398698312354 0.188099597318061 0.191526783783863 0.186913519927533 0.202339603795865 0.18920944309378 0.190627314367909 0.202347113351974 0.195818757813636 0.197075723512749 0.186913519927533 0.195881669466062 0.199693977779241 0.195099664588951 0.189658322865799 0.197339780687325 0.19522760388087 0.195082295050097 3 3 + 22843992 22844797 22844357.8 22839324 22845019 + gene protein_coding_gene FALSE TRUE AT3G61690.1 nucleotidyltransferase similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51620.2); similar to Nucleotidyltransferase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94595.1); similar to Os03g0210800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049344.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934) 0.523599195924987 5.0675258800973 0.000374406128174732 1 5.65207513071058 12.1524729414864 0.523599195924987 0.105735176084183
AT1G80610_at 2.17641166790880 2.40200831987349 3.16320183897126 3.0490335301075 1.27094885823203 1.73723099610353 1.30263988473853 1.41562592148518 1.66903151964953 0.702084377736738 0.816886809085726 1.34642594589061 1.28451476266148 1.49470910164245 1.89360276195276 1.51556805193418 1.56245254560105 1.13044600016277 0.203018576820832 0.298033274164966 0.298033274164966 0.298033274164966 0.322678801853242 0.298033274164966 0.321426709646485 0.298033274164966 0.298033274164966 0.342676275219127 0.298033274164966 0.298033274164966 0.298033274164966 0.298033274164966 0.374531951702226 0.313444147347759 0.298033274164966 0.298033274164966 0.298033274164966 0.3158896309628 1 1 - 30308537 30308808 30308637.667 30305625 30308925 - gene protein_coding_gene FALSE TRUE AT1G80610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15800.1) 0.50173163999138 5.06721505460149 0.000374587189779804 1 5.65166964754661 3.18394791322858 0.50173163999138 0.0938513477239703
AT1G67530_at 6.43387285019345 6.41107733288116 7.01277156768743 7.0025288664262 7.3313755795686 7.35976029292598 6.51425933257141 6.8841715440314 6.54768005857073 6.56897104429718 6.79300745254768 6.48460769740252 6.66951246978157 6.78013162524528 6.41213019394689 7.26563769615186 7.47533457022353 7.19827995829986 6.65161520690424 0.214245407840312 0.213038545235853 0.215515863461624 0.215421429590491 0.219787661567221 0.215145772642346 0.212275221057669 0.215290126288625 0.218529705375788 0.213045166102911 0.231634498452282 0.223212865639939 0.220276996651793 0.220941178142296 0.219190806657458 0.215868397369494 0.212275221057669 0.229388553077863 0.220221028060677 1 1 + 25314159 25314716 25314444.636 25311321 25314971 + gene protein_coding_gene FALSE TRUE AT1G67530.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G27910.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G24330.1); similar to Os01g0901000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045108.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.455585958212610 5.06573406915127 0.000375451165231202 1 5.64973741019385 13.6058533263893 0.455585958212610 0.0643487157870117
AT4G31230_at 1.70224938040892 1.66019758490740 2.21540317527132 1.84739593728522 1.74770416934784 2.11101563762910 0.819379190910234 1.00665028399739 1.08409237917898 0.848251938990176 1.50244125458020 0.969788443858125 1.11343319488477 1.24231408642303 1.23833814940199 1.13756875507841 1.76235486384123 1.34875900209269 0.963856954639115 0.160117623457491 0.163017385904658 0.158768493802959 0.161349101792484 0.162512519986726 0.157839628706160 0.159054802618664 0.156926179062798 0.167970914131006 0.160829868442242 0.159352627397844 0.162516468236857 0.16030012432028 0.162857772183674 0.159274427804190 0.158393484072170 0.159577788055211 0.16797518882518 0.157771585215062 4 4 - 15173119 15174460 15173678.333 15172903 15176115 - gene protein_coding_gene FALSE TRUE AT4G31230.1 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT2G24370.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G35380.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16760.1); similar to serine threonine kinase [Zea mays] (GB:AAL59227.1); similar to stk [Zea mays] (GB:AAV64214.1); similar to serine threonine kinase 1 [Zea mays] (GB:AAK73111.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.50361745716401 5.05751990282425 0.000380281590391611 1 5.63901327101612 2.76613699148942 0.50361745716401 0.0954570789929233
AT1G19650_at 7.35070348520809 7.3900558901521 7.31590947367038 7.29473005213337 7.62227346385204 6.9385344246007 8.60347168705584 8.35614263601301 6.62458811468113 7.78092677774372 6.39192582866166 6.58651846256416 6.92197404566012 6.96209808296303 5.9064606901292 7.35803399818119 7.35073764500712 6.63185285862962 7.36859759306315 0.210224452755699 0.200893592091089 0.212277460080113 0.20629307436515 0.203084470524842 0.213255038886679 0.215760660975953 0.208782713442853 0.205135749949653 0.202124935456161 0.20414700720588 0.207677741748463 0.207528357919615 0.199639559661638 0.215619872988009 0.203843536224381 0.216437907164659 0.199639559661638 0.203970630889323 1 1|0 -|/ 6796690 6797210 6796907.2 6796193 6799750 - gene protein_coding_gene FALSE TRUE AT1G19650.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G75370.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.563284432365647 -5.05675482417083 0.000380734840085347 1 5.63801379419173 14.6198464874043 -0.563284432365647 0.126065056359519
AT4G08500_at 5.86582887436893 5.78928470600591 6.44319833855371 6.45586513631523 5.99416237036211 5.71729493336088 5.28494551912732 5.2967572491339 4.82032639307706 4.67622161228649 4.97655471308056 4.90627780835535 5.17159938962176 5.19766610911785 4.72948653117039 5.2030838138754 5.53414214554411 4.85206558517132 4.87495386912804 0.248185969786 0.245334864412239 0.257206012317714 0.243295173911632 0.240050553930242 0.245559974393390 0.244420382664414 0.249984293958354 0.256555537404970 0.243386508897357 0.248573016997836 0.240050553930242 0.241142715641666 0.253867766927563 0.253068538870497 0.242996787723093 0.240761949010805 0.240050553930242 0.241030900545023 4 4 - 5404285 5405371 5404744.364 5403750 5407298 - gene protein_coding_gene FALSE TRUE AT4G08500.1 MEKK1 (MYTOGEN ACTIVATED PROTEIN KINASE KINASE); kinase Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1. Identical to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.11.25) (MAP kinase kinase kinase 1) (AtMEKK1) (ARAKIN) (MEKK1) [Arabidopsis Thaliana] (GB:Q39008;GB:O81470;GB:Q39020;GB:Q8W4N5); similar to MAPKKK9 (Mitogen-activated protein kinase kinase kinase 9), kinase [Arabidopsis thaliana] (TAIR:AT4G08480.1); similar to MAP3K beta 1 protein kinase [Brassica napus] (GB:CAA08997.1); similar to ARA.KIN gene product (GB:AAA99196.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.437142497325261 5.05517037840375 0.00038167532064922 1 5.6359435859697 10.7868472093148 0.437142497325261 0.0498008363933405
AT2G25110_at 9.46053320723961 9.67243158508841 10.2344243803883 10.2439942843966 9.6075493393801 9.3713799580069 8.75807273374801 8.4856535678854 8.1546379935097 8.3073633790305 8.28320415781417 8.56134486935097 8.17487035639083 8.5755837476398 8.69313307453277 8.29292859622342 8.1702769198457 8.24217213953268 8.18087017433334 0.175633260782325 0.175923328286847 0.176552393950603 0.177933413183301 0.170021319183187 0.180238400547183 0.166779129666861 0.168030952955210 0.176845473454518 0.176426489285035 0.170253023687795 0.170183564968909 0.177333374120421 0.181372454545738 0.169382676216491 0.166141763027351 0.186619727262743 0.175074543127808 0.174938034357979 2 2|0 +|/ 10691795 10692875 10692217.4 10691214 10693164 + gene protein_coding_gene FALSE TRUE AT2G25110.1 MIR domain-containing protein Identical to Stromal cell-derived factor 2-like protein precursor (SDF2-like protein) [Arabidopsis Thaliana] (GB:Q93ZE8;GB:O81720;GB:Q9SEZ5); similar to MIR [Medicago truncatula] (GB:ABE79257.1); contains InterPro domain MIR; (InterPro:IPR003608) 0.465031467047201 5.04620747329755 0.000387041945095123 1 5.62422434384525 17.7734947561621 0.465031467047201 0.0723899644249906
AT1G51070_at 7.91605409092783 8.0914518134887 8.03523661144777 8.02481664676997 7.83151100643028 7.96634788319623 7.72221486565797 7.7624913521025 6.71758175336158 6.93499383205533 7.47357166063447 8.0076334903711 7.66369096975916 7.59779176414624 7.58432032883175 7.7090118801772 7.19508262935567 7.926024755666 7.00019509181959 0.175514486362726 0.175226423835884 0.189100534692207 0.180144366744016 0.172551238562502 0.185513062857939 0.180350282497991 0.178173476644604 0.194095655156750 0.174026048861628 0.169219004541881 0.178721072627757 0.169219004541881 0.180829364998718 0.169219004541881 0.171534791176076 0.169219004541881 0.172211204149644 0.178826185498063 1 0|1 /|+ 18932367 18933143 18932913.8 18931555 18933430 + gene protein_coding_gene FALSE TRUE AT1G51070.1 basic helix-loop-helix (bHLH) family protein similar to ILR3 (IAA-LEUCINE RESISTANT3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G54680.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.425904524436171 5.04603736340762 0.000387144569044176 1 5.62400178132742 15.1832144473926 0.425904524436171 0.0389569516540986
AT3G10340_at 2.03259996099985 2.79464355064912 2.71974992178292 2.79574301331448 3.29024851324996 3.17232473935573 3.11072313842822 3.0348924219691 3.4787952976136 2.94306401585817 3.66661091522915 4.99292365101637 4.4430835679812 4.35606352993225 3.96486323694392 4.53748344600972 4.29786665586835 3.87058760298363 3.64973334868057 0.238794701173421 0.231889348839343 0.242715705956173 0.241995613334841 0.231308963288811 0.236836460366215 0.233218311467151 0.234326839802626 0.231308963288811 0.234863607618041 0.235901264569755 0.244312805062714 0.239511277383167 0.259687813609916 0.236583017833003 0.241892127993743 0.251054907093688 0.231308963288811 0.231308963288811 3 3 + 3207216 3207691 3207451.636 3204018 3208027 + gene protein_coding_gene FALSE TRUE AT3G10340.1 phenylalanine ammonia-lyase, putative Identical to Phenylalanine ammonia-lyase 4 (EC 4.3.1.5) (PAL4) [Arabidopsis Thaliana] (GB:Q9SS45;GB:Q53ZM8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G53260.1); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to PAL1 (PHE AMMONIA LYASE 1), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT2G37040.1); similar to phenylalanine ammonia lyase [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAQ74878.1); similar to phenylalanine ammonia-lyase 1 [Manihot esculenta] (GB:AAK62030.1); similar to phenylalanine ammonia lyase [Jatropha curcas] (GB:ABI33979.1); contains InterPro domain Phenylalanine ammonia-lyase; (InterPro:IPR005922); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Phenylalanine/histidine ammonia-lyase; (InterPro:IPR001106) 0.580144775304496 5.04203416600324 0.000389567951802891 1 5.61876271913054 6.68055709736685 0.580144775304496 0.134731885664831
AT3G18480_at 7.85485236923456 8.18991689702702 7.65835680047419 7.78341862639514 7.84645463851057 7.67168490155075 8.1713725113622 8.08196032866434 7.9652262252205 7.59401804220649 7.34265933261434 7.04053880381488 7.10899305786397 6.94853017833284 7.30113285030597 7.22068248417744 6.65046766316014 7.21937866817386 7.52142028355686 0.189509968964667 0.177814423597058 0.182409899771752 0.180115162058636 0.182391569439902 0.187991566362575 0.177814423597058 0.182145171513588 0.18381995185334 0.182298324524050 0.179977399624074 0.180904875622754 0.180737775607597 0.190996303179134 0.181295437601882 0.177814423597058 0.189502779033792 0.191663948138209 0.180694422543635 3 3|0 +|/ 6340619 6341420 6341064.7 6336742 6341794 + gene protein_coding_gene FALSE TRUE AT3G18480.1 CCAAT displacement protein-related / CDP-related Identical to Protein CASP (CASP) [Arabidopsis Thaliana] (GB:Q9LS42;GB:Q93ZW7); similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98508.1); similar to CASP C terminal, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95655.1); similar to Prefoldin [Medicago truncatula] (GB:ABE91623.1); contains InterPro domain CASP, C-terminal; (InterPro:IPR012955) -0.462026877680942 -5.04156521507232 0.00038985288558731 1 5.61814880607091 15.3060534992190 -0.462026877680942 0.0706028453595785
AT3G22260_at 5.54922102755362 5.38977627297125 5.83400660200428 5.88897599037802 6.48859101024805 6.04533751158592 5.07887605538156 4.03418478259862 4.21440756519149 4.42624462405739 4.6326701330022 4.54428489206507 4.54260932641373 4.6692399715576 3.98391429833562 4.45291426137911 4.49267318980295 4.20488106270321 3.44801431378108 0.289120448825103 0.29169958599072 0.288840325657350 0.28685890292801 0.290027429709224 0.294986798568107 0.285832367463896 0.286645815037729 0.300659246417264 0.301652306421602 0.293984023967481 0.285832367463896 0.287492326844497 0.296902163074278 0.296801603817514 0.285832367463896 0.288350823446143 0.292797699548029 0.298664192128795 3 0|3 /|+ 7872217 7873214 7872939.333 7870899 7873573 + gene protein_coding_gene FALSE TRUE AT3G22260.1|AT3G22260.2 OTU-like cysteine protease family protein similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G02070.1); similar to Os02g0168600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046015.1); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); similar to Os06g0669800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058325.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.731028067412628 5.03769526109375 0.000392212700770023 1 5.61308106781798 9.77359810304887 0.731028067412628 0.198545652965807
AT1G05810_at 4.06696694438726 4.39690324286142 2.72205210433301 2.32189190114342 3.648211863001 3.27890757454459 3.04978159777177 3.44944970034042 3.77386885208029 3.67588573397765 4.68900080438054 3.67951029038211 3.73031628608958 3.69821836139962 3.56787950443156 3.02013007068176 2.84560134058914 3.46147224546472 4.48315342604255 0.234204629027942 0.234701617316939 0.242811970499754 0.257461552819515 0.230347774465825 0.24563240182463 0.239931400126472 0.237748900484057 0.256263118012599 0.246414510030778 0.226526517850279 0.233047415607959 0.228886414930136 0.236130508119077 0.236191021566546 0.225643046999167 0.241400347697420 0.230792049682531 0.232825042130656 1 1|0 +|/ 1748502 1749314 1748780.9 1748313 1749459 + gene protein_coding_gene FALSE TRUE AT1G05810.1 ARA/Ara-1/AtRABA5e/AtRab11D (Arabidopsis Rab GTPase homolog A5e); GTP binding Identical to Ras-related protein ARA-1 (ARA-1) [Arabidopsis Thaliana] (GB:P19892); similar to AtRABA5d (Arabidopsis Rab GTPase homolog A5d), GTP binding [Arabidopsis thaliana] (TAIR:AT2G31680.1); similar to small GTP-binding protein (GB:AAA68983.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.569564700845417 -5.03676381044692 0.000392782933639599 1 5.61186092459283 7.1488466745283 -0.569564700845417 0.130091349995205
AT3G17410_at 9.67130952593902 9.71465908306319 9.99399524461721 10.0099236051405 10.1145544135162 9.97409966583152 9.00501148801306 9.11301434369263 9.58689766031882 8.85430652149245 9.40592191802968 9.22604295920814 9.38652004404742 9.40028781759623 9.03568889750837 9.51857948676653 9.55015363557557 9.23255803545998 9.01703097815779 0.0888094287256294 0.0873946995047777 0.0884452465546622 0.0873946995047777 0.0873946995047777 0.0941332187236616 0.0956763515586524 0.0890551957294206 0.0971407612692754 0.094484242986179 0.0906674370099944 0.087665335449813 0.0918957042187643 0.0894529895878444 0.0929768499713466 0.0873946995047777 0.0905712076673541 0.0883763346222434 0.0893678626738912 3 3|0 +|/ 5957417 5958864 5957994.6 5955915 5959112 + gene protein_coding_gene FALSE TRUE AT3G17410.1 serine/threonine protein kinase, putative similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G48210.2); similar to Pto kinase interactor 1 [Lycopersicon esculentum] (GB:AAC61805.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.419434334025173 5.03657401792323 0.000392899231944277 1 5.61161228896893 18.9481779975252 0.419434334025173 0.0316860441878826
AT3G47960_at 8.8631971971123 9.26939934976631 9.5091817097962 9.64708215890293 9.40907333227883 9.05937088069944 9.59157990699867 9.6425008706677 6.81472677628287 8.08769476707728 7.96449883952565 8.07246133889068 8.33353020161108 8.5287382868133 7.88698041545311 8.61898701853154 8.81435603417119 8.42439222662068 7.26607759662917 0.172436992607641 0.174591649281621 0.182483691079819 0.177208123506697 0.176063497675050 0.172436992607641 0.178557696970539 0.176723914491503 0.232035719199969 0.184330089814545 0.179076684915348 0.174068557323992 0.175518597188493 0.181536122688137 0.182805144540871 0.172436992607641 0.179324832986868 0.180051855615409 0.190205180751252 3 3 - 17709255 17709665 17709458.909 17708927 17711754 - gene protein_coding_gene FALSE TRUE AT3G47960.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G18880.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G62680.1); similar to nitrate transporter NRT1-1 [Glycine max] (GB:BAB19756.1); similar to nitrate transporter NRT1-5 [Glycine max] (GB:BAB19760.1); similar to nitrate transporter NRT1-2 [Glycine max] (GB:BAB19757.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.502750510577742 5.0358641917762 0.000393334512027317 1 5.6106823317894 17.2339195550438 0.502750510577742 0.096181887783824
AT3G10010_at 5.77585822030839 5.49069324239689 5.49914502899489 5.81642878581561 5.5586526871158 5.4505000538734 3.27629117903153 3.23065083057301 3.62839390600843 3.99898195863388 3.76977962382358 3.84487544580091 3.81148694585662 3.96492784714342 3.36858344229375 3.13897138047694 4.1993580165097 4.31102909260902 4.3680901615544 0.271153613298537 0.278774643881031 0.282680198517585 0.282290753682868 0.276486251072738 0.292055658541229 0.276978910076151 0.271153613298537 0.298341292891668 0.271153613298537 0.274181713774279 0.271153613298537 0.27433137894941 0.271153613298537 0.290665465323496 0.271153613298537 0.271153613298537 0.271153613298537 0.275769886856417 3 0|3 /|- 3082463 3083242 3082692.857 3081819 3088200 - gene protein_coding_gene FALSE TRUE AT3G10010.1 HhH-GPD base excision DNA repair family protein Identical to DEMETER-like protein 2 (EC 3.2.2.-) (DML2) [Arabidopsis Thaliana] (GB:Q9SR66); similar to ROS1 (repressor of silencing1) [Arabidopsis thaliana] (TAIR:AT2G36490.1); similar to Os01g0217900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042408.1); similar to putative endonuclease III protein [Ipomoea trifida] (GB:AAS79601.1); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain A/G-specific adenine glycosylase MutY; (InterPro:IPR013003); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.470223034893906 5.03515150045415 0.000393772062584893 1 5.60974853010325 8.91208507837026 0.470223034893906 0.0765692246234493
AT3G55710_at 2.90610373372785 3.13819215476568 2.19724631150747 2.30237521781272 2.91253080755687 2.39837392589229 2.7712005104303 2.71270314419028 2.90685479344115 2.61361150863845 1.89666999801725 2.27390957943069 1.99268712248353 2.40865186835835 1.78815316934055 2.55041968780552 2.20942874699584 2.51872553583509 2.86074842542998 0.215882947180028 0.215545147932272 0.222565706955350 0.215459240129879 0.21264322009521 0.215069929019301 0.225796783919636 0.219244279665128 0.216408324062880 0.21264322009521 0.216132829481117 0.21264322009521 0.218798407980220 0.21264322009521 0.217703507289479 0.21264322009521 0.215920456137585 0.21590857413729 0.213847158224526 3 3 + 20686199 20686766 20686394.364 20684826 20686925 + gene protein_coding_gene FALSE TRUE AT3G55710.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G55700.1); similar to UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase [Dianthus caryophyllus] (GB:BAD52007.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.509162924528015 -5.0343642700426 0.000394255974580419 1 5.60871695806445 5.1666252037537 -0.509162924528015 0.099817648502933
AT1G03380_at 7.59145797777477 8.0688437729324 8.0572727085352 8.30519858862173 8.82478067203193 8.11387973418077 8.22681594212011 7.8455484699261 6.86603017122821 7.04245043230452 8.01786587514778 7.9268199571546 7.99156814649414 7.98898934518693 7.57405460961611 8.505822520424 8.02165541821674 7.6556893262944 7.22153282908872 0.205516516083030 0.194268591486606 0.207587306475749 0.197616722050876 0.198844922665487 0.213320675450176 0.203888072312605 0.199543189375615 0.212912183611755 0.210943530802595 0.198941408903121 0.201093186962918 0.199828429420396 0.204521343990014 0.195851444805381 0.195298638402227 0.201879071775692 0.201775830146997 0.21896746254586 1 1 + 839746 840587 840171.182 835825 840891 + gene protein_coding_gene FALSE TRUE AT1G03380.1 AtATG18g (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) g) similar to AtATG18h (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) h) [Arabidopsis thaliana] (TAIR:AT1G54710.1); similar to Os05g0405900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85085.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.654543362048541 5.03258569886833 0.000395351584270068 1 5.60638594298352 15.6310477136107 0.654543362048541 0.167792490928445
AT3G43670_at 8.6833346253595 9.13266788721597 7.3805457944933 7.59953478215643 7.16751171882903 6.49842799739533 7.08818949750137 7.2824452177491 5.07373566490149 4.95664423500296 5.17200391338094 4.30336796241184 3.90037373481249 3.7460080347424 4.85010868987123 3.72414556705803 3.79945706291051 6.87063561210823 4.60646401594608 0.284383039021701 0.287175109989008 0.288565314299501 0.286019329680801 0.280194384604110 0.326155374001942 0.280348987802015 0.280194384604110 0.298399409661222 0.288354461749661 0.280194384604110 0.283329695052222 0.284071908380715 0.303189673497093 0.280194384604110 0.291002570446511 0.284868371625639 0.286811119749954 0.280194384604110 3 3 + 15579987 15580680 15580388.7 15578087 15580889 + gene protein_coding_gene FALSE TRUE AT3G43670.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G62810.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); similar to copper-containing amine oxidase [Solanum lycopersicum] (GB:CAI39243.1); similar to Os04g0269600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052338.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.609169816763089 -5.03107487095916 0.000396284793676241 1 5.60440539023752 12.3164374621436 -0.609169816763089 0.148390198452368
AT4G03390_at 5.98845207723947 6.65577479276939 6.00785943861063 6.34609723628316 7.23871245431241 7.42389484942238 5.9932016874948 5.98336490073965 7.63330226690648 6.92506606705477 8.27774590343319 7.90149361409867 7.93297187323535 8.17156235122206 7.83720704112355 7.45770194793055 7.5734029203757 7.32410687053037 7.21227067348533 0.210598635508256 0.195460209516734 0.199143909501371 0.203770803247774 0.194163785763905 0.206124874715312 0.195605409706570 0.203335727279911 0.200208507181237 0.196323432067364 0.194147277683017 0.192342267943424 0.189039147745520 0.193880757235996 0.198109577380999 0.198282862382062 0.224369715614816 0.204681040547569 0.196813607403866 4 4|0 -|/ 1490912 1491819 1491503 1490464 1495102 - gene protein_coding_gene FALSE TRUE AT4G03390.1 leucine-rich repeat transmembrane protein kinase, putative similar to SRF1, kinase [Arabidopsis thaliana] (TAIR:AT2G20850.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); similar to Os02g0176100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046061.1); similar to Os02g0190500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046150.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.575793513095568 5.02943266834288 0.000397301795315879 1 5.602252154098 13.9878715468053 0.575793513095568 0.133388408290927
AT1G69160_at 5.83625921816665 5.48901078433012 7.41959830608286 7.22885223581204 8.303387539375 8.36170518800008 8.34409751680218 8.76297329302751 7.29798014171262 7.61164434214867 8.1870078247312 7.27960322512802 9.04082011244766 8.33566304915477 6.60162773097559 8.7913275651537 8.45999475963422 7.30903794145394 8.19628185076918 0.221349428866099 0.207844254168253 0.199471170121726 0.196081841398036 0.200538489575725 0.19863762286302 0.194538782191013 0.200822043721650 0.212084741933408 0.207859797494670 0.193864393929092 0.195352208908999 0.198298577267155 0.200530693140375 0.204050995395364 0.193750511225282 0.192685197545716 0.199583992238954 0.195993686315213 1 1 + 26004358 26004887 26004618.545 26003877 26005251 + gene protein_coding_gene FALSE TRUE AT1G69160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13980.1) 0.509483556055305 5.02907871330697 0.000397521358155352 1 5.6017879893002 15.3195375373471 0.509483556055305 0.100285648340427
AT1G16180_at 11.2361856911736 11.2940027656090 11.4864336229917 11.6129477077184 11.6640457996082 11.5053299728894 10.7361697021700 10.8864405095311 10.7529071247007 10.4941137907751 10.8871046847994 10.7883309783745 11.0679198681674 10.8691587108479 10.7931892260281 10.9897330584506 10.8909313223437 11.1309061255819 10.5445673063229 0.079062551856932 0.075492470698765 0.0808468061602788 0.0767049867220089 0.0747984176094531 0.082284817360616 0.0755074033472629 0.0755091933791686 0.0786099860453345 0.0784331310581426 0.0753703583140231 0.0743912742412795 0.0777354918828292 0.0779787836378161 0.0748155638999635 0.0743912742412795 0.0809480998848447 0.0773006010366496 0.0806529511104674 1 1|0 +|/ 5541803 5542544 5542240.9 5540899 5542896 + gene protein_coding_gene FALSE TRUE AT1G16180.1 TMS membrane family protein / tumour differentially expressed (TDE) family protein similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT3G06170.1); similar to Os02g0792900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048364.1); similar to Os03g0454100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050476.1); similar to TMS membrane family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97020.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) 0.429476390786136 5.02490847487714 0.000400117900600595 1 5.596317589278 22.0648721318400 0.429476390786136 0.0448344046491917
AT1G63500_at 6.12071038357277 5.87227016803479 6.05159541535854 6.31528194939943 6.43280250520578 6.29569203371247 5.89231371651454 5.90607313578138 5.91251428856505 5.08326425604828 5.94938124891845 5.82174662462173 6.33236741938425 6.15087022932405 6.19313762690373 6.13378843171647 6.13319758141838 6.2169510552676 5.59884906462454 0.179138811491404 0.171403729045705 0.182817936128824 0.184357490493086 0.171444739966800 0.175608587561776 0.175853148104689 0.169121188161042 0.176946139508970 0.189412233350841 0.170925903701026 0.172727283963789 0.169052164268263 0.181701190585468 0.174537443127513 0.171109686340604 0.178519492420555 0.177137188109360 0.170456289582198 1 1|0 +|/ 23561195 23562001 23561644.222 23559351 23562562 + gene protein_coding_gene FALSE TRUE AT1G63500.1 protein kinase-related similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G41260.1); similar to Protein kinase [Medicago truncatula] (GB:ABE92129.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.455444307862447 5.02338048930913 0.000401073767614823 1 5.59431244204782 11.9348286952509 0.455444307862447 0.0670777673158299
AT3G11800_at 7.13768618957471 7.49723527461869 6.92361985245779 7.3178834882773 7.16299431146914 7.12903684244024 5.74999171880849 6.89060601211616 6.63864442987589 6.57802154544378 8.5022071945405 8.28544675795875 8.15363533730751 7.89144013666314 8.00053751183898 7.58720618226354 6.72073373575482 7.53562472844117 6.56000421490114 0.233437736214836 0.228094880193095 0.225765623833450 0.222244254585560 0.224804573668611 0.219266088066362 0.221827184358556 0.225182514402567 0.226859115659145 0.22411426869672 0.225638298046160 0.22140468054247 0.231630390739295 0.228810082898967 0.228514757861237 0.22566406710601 0.241778843710033 0.23083612521185 0.22553425227986 3 3 + 3726336 3727508 3726915.182 3726114 3727734 + gene protein_coding_gene FALSE TRUE AT3G11800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44150.1); similar to expp1 protein precursor [Solanum tuberosum] (GB:CAJ77501.1); contains domain FAMILY NOT NAMED (PTHR21454); contains domain SUBFAMILY NOT NAMED (PTHR21454:SF1) 0.778442188118699 5.02103955183265 0.000402542885313379 1 5.59123966255416 14.1895453836385 0.778442188118699 0.217998975659334
AT1G33170_at 3.92136731455462 4.06734803175341 2.52773515044824 2.21853095784994 2.23756058191806 2.51150350018918 4.63039961543158 3.88083255149691 2.31488545421746 3.76909443829071 3.44835462449631 4.62145387879698 3.79581992445799 3.65721072311487 4.22070619937561 4.05883289659112 2.98542667498275 3.29759217256915 3.6169218023189 0.211266381539368 0.209340484909032 0.214516000884336 0.205434496217305 0.219225772364247 0.223207443210099 0.216536874232289 0.220738811127954 0.209392946829426 0.224442774074040 0.206636188152317 0.209895334665423 0.218616189168427 0.210804983801618 0.206959807404130 0.210744052037948 0.218725651751306 0.21560073325891 0.206314704390587 1 1 + 12029291 12030353 12029682.909 12027064 12030519 + gene protein_coding_gene FALSE TRUE AT1G33170.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE88265.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.612056796092682 -5.02007830155787 0.00040314779174089 1 5.58997761473372 6.74656398049213 -0.612056796092682 0.150250231780959
AT1G04250_at 6.65023444717538 6.98310950604432 7.23265620188087 7.6909970617729 7.17160646741346 7.70888205224644 9.2220791749756 9.27691417835095 6.10568607777318 8.72473163926096 9.26989705678639 9.28864412066087 9.6761263522229 9.3462041825526 9.2843942894723 9.56138589070732 9.57203448504565 9.53483302961528 8.27680719557825 0.223372707966803 0.211356327170016 0.221669024118483 0.210459325308869 0.215416293306132 0.212342921536961 0.196720867950568 0.197989717058877 0.246202758496883 0.200321733932248 0.201863369413271 0.198240165328653 0.196605891918652 0.199026139768345 0.201813980309047 0.196605891918652 0.205561206796792 0.209267539078318 0.201662812309271 1 1|0 +|/ 1136552 1137567 1137052.125 1136257 1138612 + gene protein_coding_gene FALSE TRUE AT1G04250.1 AXR3 (AUXIN RESISTANT 3); transcription factor Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Identical to Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17) (Auxin response 3) (IAA17) [Arabidopsis Thaliana] (GB:P93830;GB:O49162); similar to IAA14 (SOLITARY ROOT), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14550.1); similar to auxin-regulated protein [Populus tremula x Populus tremuloides] (GB:AAM21317.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.578616370435317 5.01539689668988 0.000406107538577929 1 5.58382892614147 16.314109001276 0.578616370435317 0.13544267625509
AT3G24170_at 9.10695629677617 9.35109919238852 9.0132641010131 9.1721872868144 8.76365811331011 8.31126007125796 10.0973951922026 10.2920142599628 9.37142833000757 9.68348969279555 9.26588631219313 9.43829111225451 9.24656391930898 9.5114142506742 8.88525642717605 9.39403917070057 9.18940376685139 9.32543060741191 9.13518266383111 0.132086887080479 0.130102879838735 0.141361912393020 0.138000964514204 0.140000920456217 0.145985653189871 0.134906714023763 0.130732945090389 0.138661636308067 0.136475894503095 0.125270233183487 0.131040755996183 0.127867809305613 0.13622149169901 0.130778319257790 0.133117462172269 0.133483966914512 0.137093607788654 0.125270233183487 3 3|0 -|/ 8729807 8731231 8730419.286 8729517 8734548 - gene protein_coding_gene FALSE TRUE AT3G24170.1|AT3G24170.2 ATGR1; glutathione-disulfide reductase Encodes a cytosolic glutathione reductase. Identical to Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase) (OBP29) [Arabidopsis Thaliana] (GB:P48641;GB:Q94BM6;GB:Q9C5I4); similar to GR (GLUTATHIONE REDUCTASE), glutathione-disulfide reductase [Arabidopsis thaliana] (TAIR:AT3G54660.1); similar to glutathione-disulfide reductase (EC 1.8.1.7) - turnip (GB:T14394); similar to Glutathione reductase, cytosolic (GR) (GRase) (GB:O04955); similar to glutathione reductase [Brassica oleracea] (GB:BAD14936.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Glutathione reductase, plant; (InterPro:IPR006324); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain Trypanothione reductase; (InterPro:IPR001864); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.505719187645187 -5.01461948296138 0.000406601268506896 1 5.58280746948244 18.6028472765654 -0.505719187645187 0.099020375878138
AT4G13980_at 4.53299809072703 4.66792662619996 4.61185282627487 4.55167493412798 4.94741399287114 4.91915440090544 3.84097511074694 4.02706009949087 4.06698310187142 3.45033140428145 4.05511736335256 3.95041167273645 3.99218878224544 4.21143352458987 3.85275198397290 3.85213247030552 4.13741180089051 3.69367353529067 3.30834045174581 0.223680273133871 0.223680273133871 0.229526358487429 0.231515151280979 0.234265150175610 0.242946773878594 0.224468551664387 0.223680273133871 0.229131812855760 0.235818395795459 0.229461470205292 0.225489006049135 0.235430044471205 0.223680273133871 0.233857750408215 0.226040438287853 0.231891767429311 0.228280478531870 0.233785076020473 4 4 - 8077624 8078055 8077878.091 8076975 8079309 - gene protein_coding_gene FALSE TRUE AT4G13980.1 AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-5 (AtHsfA5) (HSFA5) [Arabidopsis Thaliana] (GB:Q94BZ5;GB:O23259;GB:Q56X02); similar to AT-HSFA4A (Arabidopsis thaliana heat shock transcription factor A4A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G18880.1); similar to HSF/ETS, DNA-binding [Medicago truncatula] (GB:ABE90447.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.424936272896879 5.009173116014 0.000410078077399045 1 5.5756483667697 8.30072790732097 0.424936272896879 0.0414079404863441
AT4G25700_at 7.39859773603219 7.781484520547 7.54884344176865 7.72597892674843 8.32072294843447 8.35599348738675 9.05489561369842 9.41842383339129 9.30233135038977 9.28582670512296 8.69462231509092 8.91614466944403 8.71977978261263 8.61370208937217 8.58021831025652 9.44736130379011 8.45756450064291 8.54038833535535 9.37810821759515 0.153026747290032 0.142488933995526 0.156206571496834 0.164749073484546 0.139269973581315 0.140740560802967 0.145337450206813 0.139866404548799 0.143375269876252 0.140052181958849 0.138368298287340 0.13793020432549 0.138369969145473 0.142485213420444 0.148070119631472 0.142688609755431 0.151803810338113 0.142763083885897 0.142656313398234 4 0|4 /|- 13094170 13095231 13094778.375 13093943 13095944 - gene protein_coding_gene FALSE TRUE AT4G25700.1|AT4G25700.2 BETA-OHASE 1 (BETA-HYDROXYLASE 1); beta-carotene hydroxylase|BETA-OHASE 1 (BETA-HYDROXYLASE 1) Converts beta-carotene to zeaxanthin via cryptoxanthin. similar to BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2), beta-carotene hydroxylase [Arabidopsis thaliana] (TAIR:AT5G52570.1); similar to putative beta-carotene hydroxylase [Brassica rapa] (GB:AAS55552.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Carotene hydroxylase; (InterPro:IPR005596) -0.500665909607346 -5.0081436700605 0.000410738774269692 1 5.57429459160194 17.2347732740125 -0.500665909607346 0.0965663705144047
AT1G78290_at 9.11234682142386 9.0608543592123 9.86559392572257 9.93880269870585 9.74217842637513 9.28484228659691 9.6435918618331 9.43907754907198 8.55975930229166 9.17066166573914 7.10941808049582 7.16265085710815 8.32393016170437 8.06638609139875 6.32643198260353 9.00682722157097 8.71853725762052 6.4102208877519 9.28834405064362 0.149878177800151 0.142569572365306 0.149013748912019 0.151107465493679 0.147032953368898 0.143583190416352 0.142569572365306 0.145185192992199 0.158745226818754 0.144527284654996 0.150331110525494 0.160570041376648 0.14443908276273 0.146271259630410 0.165872797877041 0.142569572365306 0.150449631480485 0.173167025546599 0.142569572365306 1 1 - 29462366 29462981 29462706.727 29462098 29464293 - gene protein_coding_gene FALSE TRUE AT1G78290.2|AT1G78290.3 serine/threonine protein kinase, putative similar to OST1 (OPEN STOMATA 1), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT4G33950.1); similar to Os07g0622000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060312.1); similar to abcisic acid-inducible protein kinanase [Oryza sativa (indica cultivar-group)] (GB:AAO65504.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.485909001114125 -5.0071403408842 0.000411383793228552 1 5.57297497899023 17.834313652996 -0.485909001114125 0.0880699390672077
AT4G15020_at 3.20903638656655 3.96467202400437 4.37548580346486 4.93325479349923 4.50270765518564 4.72679393403281 4.11897087783058 4.07920185775693 2.86750809711313 2.79841457839006 2.99535365943614 3.21967452776723 3.40548133205508 3.18028035543895 3.45409678365939 3.75837712473948 3.35291489720301 2.74239792965955 2.60009302245417 0.276831301392214 0.263660510912574 0.270998267627293 0.268061483493238 0.268912672027309 0.278798071759167 0.270059161980900 0.265828613233336 0.279032930238611 0.274217681429552 0.263660510912574 0.268496383824888 0.263660510912574 0.275276503315878 0.274066008474432 0.266100743335376 0.264243261839219 0.270292318013455 0.278648186894062 4 4 + 8576851 8577409 8577147 8575647 8578682 + gene protein_coding_gene FALSE TRUE AT4G15020.1 similar to DNA binding / protein dimerization [Arabidopsis thaliana] (TAIR:AT3G22220.2); similar to Os03g0822900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051738.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18451.1); contains InterPro domain Viral capsid/hemagglutinin protein; (InterPro:IPR008980); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) 0.649911885132551 5.00712344984072 0.000411394661288779 1 5.57295276177529 7.24822073765794 0.649911885132551 0.167236332654655
AT3G17440_at 7.79457027146111 7.85064929661654 8.31808198655887 7.70838673836906 8.82223820202036 8.34772895178436 8.23379881099623 8.09681087055282 7.46677360599213 7.50979834288394 8.70228719987292 8.52270166143699 8.06202593755178 8.64589768959267 8.32703832034873 8.32530653434343 8.00070588000653 8.13153419540881 7.48485244083862 0.180002054313194 0.178959609001106 0.174307859907055 0.173958313321563 0.178882447607406 0.173536841905876 0.176685054844288 0.168238545033096 0.178082567126803 0.176184706650063 0.166054496627594 0.173707933026470 0.170288161737005 0.17262963989544 0.172435069750054 0.166486842133698 0.180810317851751 0.174014561211306 0.1743240018233 3 3|0 -|/ 5969965 5971242 5970473.875 5969570 5972508 - gene protein_coding_gene FALSE TRUE AT3G17440.1|AT3G17440.2 NPSN13 (novel plant SNARE 13) member of NPSN Gene Family Identical to Novel plant SNARE 13 (AtNPSN13) (NPSN13) [Arabidopsis Thaliana] (GB:Q9LRP1); similar to ATNPSN12 (novel plant SNARE 12), protein transporter [Arabidopsis thaliana] (TAIR:AT1G48240.1); similar to Os03g0369800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050195.1); similar to Os07g0637400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060402.1); similar to SNARE 12 [Oryza sativa (japonica cultivar-group)] (GB:AAU94636.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705)|Identical to Novel plant SNARE 13 (AtNPSN13) (NPSN13) [Arabidopsis Thaliana] (GB:Q9LRP1); similar to ATNPSN12 (novel plant SNARE 12), protein transporter [Arabidopsis thaliana] (TAIR:AT1G48240.1); similar to Os03g0369800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050195.1); similar to SNARE 12 [Oryza sativa (japonica cultivar-group)] (GB:AAU94636.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.578848685679245 5.00450427547081 0.000413083575322377 1 5.56950707846048 16.0599474613241 0.578848685679245 0.136131213383715
AT3G11780_at 9.61614980409705 9.86202256850296 10.1753740204244 10.3367466930895 10.4855036292608 10.3024087199376 9.68374107606639 9.93731143865081 9.82923171928066 9.76078444975558 10.5590971329040 9.98693567835018 10.2066755143996 10.2666407262281 10.0562818858561 10.2683710306872 9.60270313543434 10.3108158375375 9.74848319179137 0.103372534348437 0.104179127263164 0.103744743656116 0.101665932162570 0.102800389294066 0.104950503457833 0.107693617766337 0.107822399290013 0.117066440887328 0.108187018381986 0.103354757399753 0.10014793426077 0.104580363974860 0.104556500002797 0.100943865507223 0.100848082557630 0.115228571970476 0.101386300585577 0.106889138588986 3 3|0 -|/ 3724838 3725453 3725124.889 3724140 3725598 - gene protein_coding_gene FALSE TRUE AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein similar to MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06480.1); similar to Os03g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051500.1); similar to putative ML domain protein [Nicotiana glauca] (GB:CAH69231.1); similar to Os07g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058934.1); contains InterPro domain E1 protein and Def2/Der2 allergen; (InterPro:IPR003172) 0.463946187290424 5.00424109399926 0.000413253686919637 1 5.56916077939544 20.0182521960623 0.463946187290424 0.07429594273689
AT2G32100_at 8.25986548926545 8.6736053301309 6.79582908837305 7.41804522301793 7.86937677725837 8.0750752291843 8.49472768982434 9.08141951707862 9.28521837377622 8.842376697509 9.08643987450785 9.22298032342446 9.35775985986775 9.40416714426386 8.61042402509285 9.19845569029664 8.36451409064862 8.40607087529308 9.38749412141063 0.142104216653515 0.144298378897167 0.188068421485553 0.157282017875373 0.155931271747710 0.156524139090821 0.149004614166384 0.154989601644498 0.153584058426915 0.146250786165043 0.142104216653515 0.145564760209494 0.146789164729311 0.151670980551991 0.147885994178807 0.146890275379073 0.167810519338550 0.147443851578288 0.149761075337932 2 2 + 13655076 13655623 13655413.364 13654929 13655862 + gene protein_coding_gene FALSE TRUE AT2G32100.1 ATOFP16/OFP16 (Arabidopsis thaliana ovate family protein 16) similar to ATOFP12/OFP12 (Arabidopsis thaliana ovate family protein 12) [Arabidopsis thaliana] (TAIR:AT1G05420.1); similar to ethylene receptor [Litchi chinensis] (GB:AAQ56281.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) -0.651583919628659 -5.0021166518395 0.00041462957111784 1 5.56636494553151 17.1475169845115 -0.651583919628659 0.168215251220425
AT2G37480_at 8.12447848213287 8.51632719241861 8.14836740049655 8.15106123936076 9.14834573634134 8.55327137524906 8.06424843070492 7.79788403074806 7.52238728166434 7.22791583543342 8.20160173976998 8.21140606536633 8.19099302630597 8.2183422535251 7.96704159759808 8.33570975902844 7.95208296199498 7.59172553657787 7.21222741721575 0.134267044980413 0.129344720499610 0.139924032561062 0.132627820871252 0.133139102393932 0.133751926333425 0.13615373341912 0.13200472391205 0.138549569702511 0.138594589326494 0.130074862092619 0.12902578617506 0.128726935165668 0.131515283720733 0.133467623681476 0.128973350802554 0.144938221682332 0.131763507872362 0.136040502368436 2 2|0 +|/ 15745250 15746579 15745686.952 15744938 15746926 + gene protein_coding_gene FALSE TRUE AT2G37480.1|AT2G37480.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53670.1); similar to hypothetical protein MtrDRAFT_AC125368g26v1 [Medicago truncatula] (GB:ABE93949.1); similar to hypothetical protein MtrDRAFT_AC135797g8v1 [Medicago truncatula] (GB:ABE82095.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.568648129971911 4.9996668825721 0.000416222170198858 1 5.56313996914698 16.0152261754109 0.568648129971911 0.131637184948752
AT1G15730_at 8.89589252050557 8.9908498078591 8.3649554630517 8.486844086289 8.85646762697653 8.40109218301098 9.33801508790465 9.20644033469186 9.2075738131393 9.39796345268524 9.26333679975857 9.03499014457778 9.01425574488893 8.74731322144724 9.0770512883792 9.07013477099212 8.70838528336265 8.78760936733732 9.43500270366673 0.114047142213276 0.117265449458404 0.122395634944328 0.118810299693426 0.119911618206795 0.123451325693375 0.118704314050616 0.114473315129163 0.123849395091577 0.114047142213276 0.119592552862736 0.117935860253472 0.116125030780386 0.123541452256711 0.114591020842146 0.114047142213276 0.133935315676845 0.117951371084418 0.114531694163378 1 1|0 -|/ 5407536 5408694 5407954.75 5407396 5409979 - gene protein_coding_gene FALSE TRUE AT1G15730.1 PRLI-interacting factor L, putative similar to PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) [Arabidopsis thaliana] (TAIR:AT1G80480.1); similar to Cobalamin synthesis protein (ISS) [Ostreococcus tauri] (GB:CAL54572.1); similar to Os02g0800000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048412.1); similar to Os04g0599700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053753.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW, C-terminal; (InterPro:IPR011629); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) -0.48221083840618 -4.99963781219127 0.000416241107707623 1 5.5631016932689 17.9724352558312 -0.48221083840618 0.0862764600985372
AT1G01820_at 9.54514314268215 9.50905567346715 9.75748141766224 9.6168355750048 10.2511863188902 9.95669193969482 8.6906150221569 8.84065873385959 8.70814424058125 8.55495440710994 8.66607032743542 8.52497369221501 9.02118503586152 8.91931009127102 8.51808250895052 8.69193366676674 8.83723206488044 8.46080114201284 8.41625833037468 0.150132775601573 0.151840362232746 0.145968914972157 0.149911007063895 0.151005452779494 0.151528750132005 0.149439094746765 0.150950860261409 0.153989482026048 0.162687718390847 0.146874751156745 0.146341920941888 0.149840971372225 0.146607368071112 0.149119059807165 0.145540221202753 0.159008320094430 0.155465591382937 0.157253012273894 1 1|0 -|/ 296392 297591 296893.3 296001 298120 - gene protein_coding_gene FALSE TRUE AT1G01820.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to PEX11D [Arabidopsis thaliana] (TAIR:AT2G45740.3); similar to unknown [Lycopersicon esculentum] (GB:AAF75750.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.447171788295234 4.99926896140873 0.000416481469760795 1 5.56261602818612 18.1533255906920 0.447171788295234 0.062473360006629
AT3G07610_at 4.30056195381383 4.84799084523823 5.69314333264009 5.3496007508989 5.17440195089373 5.20287194073527 4.38053740633388 4.43290172704105 3.67062686021515 3.8746352028233 4.01280085977214 4.41317086681292 4.65449917144886 4.19061817251893 3.5415550905216 4.37970461324666 4.2301500676517 3.4730483672016 4.20917610682393 0.221851739769101 0.223747028999294 0.232211814548027 0.233733160159409 0.224032580137283 0.227934916588400 0.222721904164681 0.231037896144506 0.230400765615528 0.221217987642977 0.231043054823710 0.21932824169762 0.219549021605296 0.225641784330862 0.21932824169762 0.220258984345708 0.221156826399713 0.229417673791976 0.21932824169762 3 3 + 2431855 2432835 2432215.091 2426075 2432882 + gene protein_coding_gene FALSE TRUE AT3G07610.1|AT3G07610.2 transcription factor jumonji (jmjC) domain-containing protein similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC; Cupin re (GB:ABE89453.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347)|similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00990.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE94342.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347) 0.529151927605628 4.99918666144010 0.000416535120667054 1 5.56250766066473 8.93779596733317 0.529151927605628 0.112319337333184
AT4G36750_at 7.45412932280736 7.7081968996693 7.5774832461164 7.91319515350508 7.84190959193713 7.59539387292811 7.03150612011363 7.18111519291505 7.68414063136096 7.22704833902095 8.16657595730403 7.75806061512149 7.8591817879223 7.98871357284926 7.85107196948091 7.84913721345625 7.74994664642948 7.67546649676921 6.92755880826932 0.177570274266848 0.168029218820168 0.166606555923368 0.165116834164616 0.164422172060942 0.184431904221703 0.171108363968443 0.173050386079563 0.177578803227347 0.177272249368237 0.171798663929656 0.161446887435803 0.163113208493467 0.168248363965611 0.167006216578134 0.163332760128664 0.167166100070684 0.169769915564306 0.175533996220379 4 4 + 17324869 17326103 17325322.182 17324575 17326462 + gene protein_coding_gene FALSE TRUE AT4G36750.1 quinone reductase family protein similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254) 0.485472635889106 4.9985192946414 0.000416970443601867 1 5.56162886852369 15.1087921126492 0.485472635889106 0.08830972758561
AT2G15900_at 6.76885786437868 6.79502696830605 6.41677341050294 6.92703653349507 7.16987700053219 6.83781404459187 5.53606185995076 5.20106787192573 4.96405410869136 4.93207451818412 5.25629383870152 4.68883910232829 5.7976639190339 5.32796990857367 4.92048645761153 5.53328725421002 5.8736288747035 5.18027808088248 5.08972509950961 0.285006013900619 0.293912631311497 0.29523075077146 0.285692908603573 0.285006013900619 0.293758125904314 0.285006013900619 0.290302774738737 0.28977705776968 0.29270125100856 0.288948879865929 0.289842283515052 0.289489576666980 0.285006013900619 0.287391422625365 0.287239645021191 0.302864395434165 0.292466254258813 0.294007247289402 2 2|0 +|/ 6938037 6939135 6938522.889 6934472 6939784 + gene protein_coding_gene FALSE TRUE AT2G15900.1 phox (PX) domain-containing protein similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G15240.1); similar to phox domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91571.2); contains InterPro domain PX-associated; (InterPro:IPR003114); contains InterPro domain Phox-like; (InterPro:IPR001683) 0.544821480092063 4.99658631896306 0.000418234040363058 1 5.55908306670751 11.6153596966941 0.544821480092063 0.120337098537059
AT1G72900_at 5.51930799836047 5.91866558440664 8.55964724464595 8.84566929877916 6.38740535082575 5.81956570983446 5.18224001930922 4.15331123950251 5.49311860518086 5.38392658505142 4.92829613302523 4.44555214227299 4.19902703300421 4.48946223465701 3.94658569782725 5.6373453938733 4.72130614130296 4.63925413049001 4.94659561967464 0.236894922397548 0.238788375824520 0.243092981356366 0.240877710804258 0.237504161844858 0.244175473089243 0.234246404956255 0.234246404956255 0.237188566243182 0.239258842697091 0.240995974736073 0.241149161355464 0.240179932326487 0.242870465994804 0.239912524436178 0.234246404956255 0.238705110216371 0.239515963215907 0.234246404956255 1 1 + 27436750 27437165 27436959.455 27435856 27437443 + gene protein_coding_gene FALSE TRUE AT1G72900.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72940.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.780498683648801 4.99380297975204 0.00042006064487585 1 5.55541613107928 11.2484268306791 0.780498683648801 0.220427856743499
AT4G15550_at 7.80782781119243 8.161604888116 7.99567513193478 8.37046404320798 8.47466075522095 7.93464871095396 8.57224277201975 8.8695503034454 8.00035300527165 8.50412256531443 9.39119369614514 9.56531760328344 9.65712707215644 9.6746478666101 9.48363288033028 10.2484085023537 9.9322722579053 9.8719520286399 8.70093210596211 0.138030767688551 0.128021882734578 0.141942775170634 0.124704409212166 0.125983412306656 0.134747088066409 0.127331505062936 0.123418617498469 0.139110702323117 0.127283790224491 0.130072867903601 0.127330119820815 0.122274166328163 0.121657352173465 0.127488231752683 0.126089904621159 0.123441331499011 0.121657352173465 0.123565051557292 4 4 - 8877904 8878438 8878148.909 8877588 8879325 - gene protein_coding_gene FALSE TRUE AT4G15550.1 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups UDP-glucose:indole-3-acetate beta-D-glucosyltransferase similar to UGT1 (UDP-glucosyl transferase 75B1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05560.1); similar to glucosyltransferase NTGT2 [Nicotiana tabacum] (GB:BAB88935.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.583661073107332 4.99130763185719 0.000421705425905936 1 5.55212743538444 17.3382700756501 0.583661073107332 0.139051304139259
AT3G03250_at 9.54377866185661 9.5408968925715 9.25001689316026 9.34363645475755 9.06567212115918 8.9020796055319 10.5560980702430 10.3291087315174 9.24083427751232 9.4324428782206 9.06722718476042 9.30875438853079 9.16536974867818 9.4064207043376 9.53575399767943 8.9749755846635 9.2395582562618 9.20779846302911 9.0798887827048 0.131481128168588 0.123790406840550 0.127884973912401 0.128605458124042 0.125099265430839 0.127229409697989 0.132914452706804 0.13708037805536 0.133439546708495 0.123210288038486 0.126436063627890 0.123286502916806 0.122522810947791 0.120736178659259 0.121167373334536 0.127218182531905 0.128688546647897 0.120780675154497 0.123672743869582 3 3|0 -|/ 750092 750814 750428.25 749397 754166 - gene protein_coding_gene FALSE TRUE AT3G03250.1 UGP (UDP-glucose pyrophosphorylase); UTP:glucose-1-phosphate uridylyltransferase Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase. Downregulated by flooding. Identical to Probable UTP--glucose-1-phosphate uridylyltransferase 2 (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) [Arabidopsis Thaliana] (GB:Q9M9P3;GB:Q9ASY1); similar to UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative [Arabidopsis thaliana] (TAIR:AT5G17310.2); similar to UDP-glucose pyrophosphorylase [Populus tremula x Populus tremuloides] (GB:ABB88893.1); similar to UDP-glucose pyrophosphorylase [Cucumis melo] (GB:ABD98820.1); similar to UDP-glucose pyrophosphorylase [Bambusa oldhamii] (GB:AAO48422.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618) -0.432471171107447 -4.98559555380184 0.000425496177990127 1 5.54459512446648 18.8110547307523 -0.432471171107447 0.051061272850429
AT3G28080_at 6.11336862541675 6.32512471928178 6.08710723333643 5.92667586060564 7.06215881081332 6.40659944813213 8.28440258886394 7.75586058278548 6.49169462310826 7.69302165212977 6.76550610281208 6.48545752254307 6.84064681431818 6.54649056567951 6.58061325470148 7.50481312020776 6.81078249299607 6.19724092870076 7.39891198408376 0.196316374270974 0.201147660645191 0.206872900204069 0.205625944962716 0.197672330585670 0.205479868876992 0.205848843513308 0.215021778827046 0.228863007610859 0.205648132372328 0.206532767216846 0.197593793580218 0.202038115682519 0.201664929938319 0.204401818736861 0.195052259788574 0.215230836618369 0.209510894767143 0.201779076800406 3 3|0 +|/ 10454736 10456271 10455390.3 10452755 10456504 + gene protein_coding_gene FALSE TRUE AT3G28080.1|AT3G28080.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28070.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28070.1); similar to Os05g0493800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055921.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE81602.1) -0.613576346863756 -4.98499375344962 0.000425897649080956 1 5.54380121274244 13.7006555353305 -0.613576346863756 0.152807718795237
AT1G33340_at 4.73618407669047 6.12044875728816 3.99529147862409 4.14072737548509 4.8813936316525 4.79513188109056 6.52252950177269 6.69380648492238 4.2504232916822 4.61708403317701 4.08245577386636 4.13196100419103 4.18051845917226 3.6534485930783 4.1200219437523 5.07412505243705 5.2053119919292 5.24373969257323 4.85183765850574 0.256883435364229 0.245464900494261 0.249755867101108 0.254511364386187 0.255373457904332 0.246506863611689 0.252877229412698 0.25394428188799 0.255875960043001 0.245885623522522 0.250110053244127 0.249290390165678 0.247120669258070 0.244211608830578 0.254457730516707 0.248060435048411 0.273519463995515 0.253352372723942 0.244211608830578 1 1 + 12088151 12088620 12088368.818 12087560 12088938 + gene protein_coding_gene FALSE TRUE AT1G33340.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related Identical to Putative clathrin assembly protein At1g33340 [Arabidopsis Thaliana] (GB:Q9C502); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT4G02650.1); similar to ANTH [Medicago truncatula] (GB:ABE88454.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.83838664701769 -4.98374467117251 0.000426732212146932 1 5.54215318229941 9.75297055260572 -0.83838664701769 0.24314748078931
AT2G20750_at 4.48621209747272 4.29210853711664 1.38115894784061 1.57780083357632 1.9002914935333 2.55768311867042 4.80245405805671 5.28867069906907 5.28731025167826 3.83971606561296 6.45203646040338 7.88754828338314 5.45702887579505 6.26753613238064 8.17980512455788 5.73255661030711 3.59540661080537 6.35539626734265 4.63924979049312 0.266514204391374 0.264169803810870 0.275109925384161 0.27823806017168 0.259775366868638 0.267250979924663 0.263491511031306 0.266702387339488 0.268210676580365 0.267468642199905 0.259775366868638 0.260966451634861 0.264351313267565 0.263446043442149 0.259775366868638 0.264055594320089 0.267499656707454 0.259775366868638 0.259775366868638 2 2 + 8948608 8949458 8948877.909 8948200 8949770 + gene protein_coding_gene FALSE TRUE AT2G20750.1 ATEXPB1 (ARABIDOPSIS THALIANA EXPANSIN B1) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-B1 precursor (AtEXPB1) (At-EXPB1) (Beta-expansin-1) (Ath- ExpBeta-1.5) (EXPB1) [Arabidopsis Thaliana] (GB:Q9SKU2;GB:O23688); similar to ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3) [Arabidopsis thaliana] (TAIR:AT4G28250.1); similar to Expansin-B17 precursor (OsEXPB17) (Beta-expansin-17) (OsaEXPb1.13) (GB:Q7X6J9); similar to Os02g0639500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047539.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) -0.605486078248249 -4.98263115233492 0.000427477658059349 1 5.54068377840881 8.70063397227532 -0.605486078248249 0.149360771924486
AT3G27560_at 6.77001882088672 7.04925670066597 7.39513287870817 7.75667389837255 7.19106872650909 7.70076905461977 5.24546828508902 5.79521331503879 5.15866187324795 6.1763858498412 5.74991494473563 5.27058973853811 5.52083585213125 4.97366135847529 4.84117779759967 6.19142522316743 6.26650220129562 5.27612013490329 5.41924918732037 0.249837020519991 0.244136475363907 0.250974812214377 0.246156543510998 0.250847881782043 0.253664210098474 0.25508502223532 0.254422569684141 0.268992475952663 0.258660046966854 0.246545238655435 0.244136475363907 0.255418973657367 0.258036870337222 0.246690841511428 0.246644496002263 0.253456848269805 0.254224980883743 0.250364099829421 3 3|0 -|/ 10211876 10212689 10212092.1 10211668 10214241 - gene protein_coding_gene FALSE TRUE AT3G27560.1 ATN1; kinase/ protein threonine/tyrosine kinase encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06438.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.611217314342441 4.98213536034933 0.000427810009351998 1 5.54002945809226 12.4109722315657 0.611217314342441 0.151923833332223
AT3G10640_at 6.32234342266712 7.05040346660007 7.41239957638265 7.65911938094335 7.32271304977226 6.9227627540552 5.91290259550959 5.90619099289381 6.50803303220515 5.37288086992337 6.25687233715313 6.02475051544022 5.87342604307532 5.87262816863257 5.59248394195195 6.28043344467184 5.65036334779435 5.75636099549714 5.31270398419861 0.244703065949637 0.245099594988827 0.258092038547237 0.247311763463607 0.247091316781993 0.251808897291271 0.248841717827460 0.241579708600888 0.254528416322997 0.242825486791546 0.242780436825144 0.247012516177936 0.250821789234053 0.255147049890470 0.254079482446865 0.246454556971628 0.256271170054347 0.247006420300428 0.244201319399861 3 3|0 -|/ 3323665 3324502 3323997.7 3323315 3325051 - gene protein_coding_gene FALSE TRUE AT3G10640.1|AT3G10640.2 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G04850.1); similar to putative CGI-34 protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16321.1); similar to Os05g0102900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054389.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.606748729019374 4.98183114961859 0.000428014070537968 1 5.5396279549616 12.6359148105461 0.606748729019374 0.149964360376836
AT1G78020_at 9.61793534550186 9.83405874887677 9.45823812641116 9.84191039580972 10.1453906822343 9.92409531683388 10.6559285346920 10.7952950678147 10.5734044656484 10.8119437851519 10.0340061410666 10.1669539240920 10.2502869800851 10.3118938517796 9.66173619559525 10.6894014494251 9.95213404512792 10.0945011255464 10.8058689996972 0.0755007380393704 0.0722096683867423 0.0821819240122322 0.0726307323779155 0.0745899163844816 0.0765480190475681 0.0744624114556978 0.07519899409392 0.072213774193003 0.0729760018017604 0.0765411641453154 0.0722096683867423 0.0722245686910596 0.0743174366285632 0.0785417376649228 0.0727662747467015 0.08220727218755 0.0735839162926565 0.0733385182909377 1 1 + 29343692 29344356 29343988.727 29343587 29344649 + gene protein_coding_gene FALSE TRUE AT1G78020.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G22160.1); similar to Os06g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057184.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25910.1); similar to Os08g0407600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061776.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) -0.484343664987568 -4.98136733736923 0.000428325388807587 1 5.53901577489664 20.4718665093996 -0.484343664987568 0.0886317677626194
AT3G50670_at 8.08123284719691 7.96463560015525 7.71289465998664 7.60972037116301 7.64222795591908 7.8445227271071 7.7124147731675 7.98466502016742 8.25454558046862 8.51860875943185 7.60138070535043 7.8179899360624 8.01514420719778 7.75887101763818 7.87202506458965 8.1232382210194 7.97932277935966 7.65077609993153 8.77298865839713 0.126114394741442 0.131633524775272 0.132027298811274 0.131112937933156 0.133801425096151 0.134387629071608 0.124889201388701 0.127761570522027 0.130859099420444 0.133810976199845 0.131443625979215 0.124889201388701 0.128980864611737 0.130402676864184 0.126546552628186 0.126830921600045 0.132807203076018 0.135643074435387 0.130727689795862 3 3 - 18837543 18838045 18837794.091 18837281 18840599 - gene protein_coding_gene FALSE TRUE AT3G50670.1|AT3G50670.2 U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding Encodes U1 snRNP 70K Identical to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K) (RNU1) [Arabidopsis Thaliana] (GB:Q42404;GB:Q42378); similar to U1 small nuclear ribonucleoprotein 70 kDa, putative [Arabidopsis thaliana] (TAIR:AT2G43370.1); similar to putative U1 snRNP 70K protein [Trifolium pratense] (GB:BAE71300.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K) (RNU1) [Arabidopsis Thaliana] (GB:Q42404;GB:Q42378); similar to U1 small nuclear ribonucleoprotein 70 kDa, putative [Arabidopsis thaliana] (TAIR:AT2G43370.1); similar to U1 snRNP 70K truncated protein-related [Medicago truncatula] (GB:ABE78863.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.448216563583358 -4.98034354315059 0.000429013424097649 1 5.53766434557293 16.0029014960209 -0.448216563583358 0.0645851559218997
AT3G19010_at 11.1246238031603 11.1887867680644 11.3105560595862 11.2733928772521 11.1759874935115 10.8952438938989 10.1078242979648 9.9547742277296 10.1878695855258 9.76042724160909 10.2632516684914 10.2014700976502 9.7150005841487 10.4032237038259 9.55635337462657 10.0201143843762 9.94061295039665 10.1225061338120 9.21403853431012 0.108924422753805 0.100586549800884 0.104054985028420 0.105650858190836 0.101779890630707 0.103762359590963 0.108622191930560 0.104803928198791 0.112756204390260 0.108584900160406 0.103137480790349 0.102217608312999 0.105087436300067 0.10403124283621 0.101178646906027 0.100586549800884 0.123860618481723 0.109006686071419 0.112353831070805 3 3 - 6556421 6556943 6556719.091 6556203 6557944 - gene protein_coding_gene FALSE TRUE AT3G19010.1|AT3G19010.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19000.1); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19000.2); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.43841548259166 4.97935531225829 0.000429678668044844 1 5.53635968306609 20.7531962106365 0.43841548259166 0.0568028785044084
AT1G70070_at 7.54585169496007 7.79996371593604 7.37327813448957 7.18804668682829 7.32654734395917 7.28104120254883 7.18051412155652 7.46942656527687 7.63629078139467 7.76247179467533 7.06957111077954 7.12785440537807 6.8672830693932 6.83667723446026 7.20555050648081 6.87073618367547 6.51101860048716 7.04125649934844 7.57316407487475 0.176242681240289 0.175249949483840 0.18445293921753 0.178526995061175 0.168817191393584 0.177294497763011 0.171680194948475 0.179767187181268 0.180408032537884 0.171501229306462 0.179497837182927 0.179121638904623 0.173765381985328 0.185315388837491 0.179605221606515 0.170587352316979 0.184425623336809 0.18223307046853 0.167065546123964 1 1 - 26393688 26394180 26393889.273 26393679 26397859 - gene protein_coding_gene FALSE TRUE AT1G70070.1 PDE317 (PIGMENT DEFECTIVE 317); ATP-dependent helicase similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G46960.1); similar to Os02g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048065.1); similar to DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus tauri] (GB:CAL55965.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.461388057436896 -4.9763024114405 0.000431740678653072 1 5.53232814191237 14.6948598506437 -0.461388057436896 0.0743178246738234
AT4G39210_at 6.68412329183764 6.86460416733946 6.34214999946027 6.48703901500186 6.28979822473337 5.7504095671478 7.17369705710672 6.93165036640612 5.72847526657188 6.18459293873833 5.13378656300238 5.26607035939024 5.36116391464083 5.74943899892131 5.16300412021147 5.68511080338407 5.30738215954364 5.19221261011301 5.20190828829863 0.221335814023277 0.212671492718008 0.214484703418907 0.224634822779527 0.222224858817045 0.236981733132177 0.235349851542338 0.220680883933957 0.224009207617941 0.218577879849984 0.219402542368052 0.210020680976618 0.212164946866993 0.210322997469390 0.216324705835517 0.212936608007618 0.216669415703714 0.212984544839462 0.211383185080759 4 4|0 +|/ 18261984 18263117 18262560.556 18259603 18263411 + gene protein_coding_gene FALSE TRUE AT4G39210.1 APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. Identical to Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (APL3) [Arabidopsis Thaliana] (GB:P55231;GB:Q9ZR38); similar to APL4 (large subunit of AGP 4), glucose-1-phosphate adenylyltransferase [Arabidopsis thaliana] (TAIR:AT2G21590.2); similar to APL2 (large subunit of AGP 2) [Arabidopsis thaliana] (TAIR:AT1G27680.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum habrochaites] (GB:ABC26923.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] (GB:ABC26921.1); similar to ADP-glucose pyrophosphorylase large subunit [Lycopersicon hirsutum] (GB:AAD56405.1); contains InterPro domain Glucose-1-phosphate adenylyltransferase; (InterPro:IPR011831); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain ADP-glucose pyrophosphorylase; (InterPro:IPR005836); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.521945246236034 -4.97569457874704 0.000432152472887078 1 5.53152526328449 12.0965656389727 -0.521945246236034 0.109871709315795
AT3G23830_at 3.80222296166981 3.96642738650110 3.14434870024559 3.57729299634489 3.04115573019052 3.09913572303835 4.34361483729439 4.21243223710089 3.74279667225418 3.8918075559851 4.00536508028816 4.37241609811704 3.65981153556831 3.42868892791979 4.49345560891536 3.75327061692342 3.66135110616488 3.87292028288572 4.34186485813443 0.197823883138912 0.195419066815864 0.190202264031198 0.191326135907628 0.193770027009969 0.19234487329145 0.189162230405946 0.190799043423708 0.191166906042673 0.189234264723995 0.186610689409440 0.193665728572402 0.189462475416595 0.187838758621440 0.190097398092968 0.186610689409440 0.192971451101939 0.189747025681415 0.192445455698104 3 3 - 8606809 8607658 8607295 8606484 8608090 - gene protein_coding_gene FALSE TRUE AT3G23830.1|AT3G23830.2 GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding / single-stranded DNA binding|GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination. similar to ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2), RNA binding [Arabidopsis thaliana] (TAIR:AT4G13850.2); similar to glycine-rich RNA-binding protein PsGRBP [Pisum sativum] (GB:AAB71417.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.475968761606723 -4.97505325459377 0.000432587407279967 1 5.53067807470926 7.5973619561594 -0.475968761606723 0.0838867932044958
AT3G11700_at 7.60386095016014 7.98820447782893 6.1856163564329 6.99446345987294 7.78247136280144 7.61248867928997 9.03353718070247 9.14626441783952 9.77331591107347 8.76499431815677 10.3130995969507 9.6263710256778 9.3947596455351 9.99865628492948 9.65127483366424 9.03430185612166 7.60357568915971 9.35288308635389 9.43792670860834 0.166473535918403 0.161689010789494 0.197797351189501 0.176010521473941 0.167364171763517 0.169122865316878 0.163156407058369 0.164989375458903 0.163914507084211 0.163713156731925 0.165117325721903 0.157788530438593 0.157788530438593 0.161550735294098 0.159851149969927 0.159230309270477 0.171678799436296 0.165605541739223 0.1591321198114 3 3 + 3699792 3700228 3700009.545 3698845 3701499 + gene protein_coding_gene FALSE TRUE AT3G11700.1 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein Identical to Fasciclin-like arabinogalactan protein 18 precursor (FLA18) [Arabidopsis Thaliana] (GB:Q93W32;GB:Q9SRM7); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52370.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06390.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35860.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71191.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.62637692617362 -4.97486648840815 0.000432714155735272 1 5.53043134295969 17.142002143072 -0.62637692617362 0.158942501043202
AT4G05030_at 1.86700141151660 1.71724062674405 2.70803549356083 3.15558131611994 2.06774344402819 2.03778177245827 1.06356415332156 1.42240082514632 1.51185623704447 1.67005879563185 1.23315258245829 1.40803846678653 1.44001460572450 1.74962224942150 1.56806354555753 1.43928062514525 2.08102153965776 1.61869467276068 1.39509666687437 0.191125753664173 0.190457406696978 0.22190333761613 0.204633323041887 0.191933818903348 0.190802376699333 0.190957700692111 0.197014667268618 0.200713905721772 0.192888347986592 0.191823993017380 0.198054483965634 0.204068802185732 0.192549435615223 0.190035439316709 0.191329127718053 0.197681674903669 0.204220841912372 0.196593489982321 4 4|0 -|/ 2576799 2577799 2577140.333 2576788 2577972 - gene protein_coding_gene FALSE TRUE AT4G05030.1 heavy-metal-associated domain-containing protein similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT3G20180.1); similar to OSIGBa0150F01.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67426.1); similar to heavy metal-associated domain, putative [Medicago truncatula] (GB:ABE90826.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17466.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.508149610890893 4.97193666025431 0.000434707625952680 1 5.52656001151888 3.55137193158992 0.508149610890893 0.102729046293189
AT1G69420_at 6.38431431456806 6.16170251456875 5.02245981848895 4.94264484126054 5.96459134530514 6.37561703861316 7.13293479633219 6.79590653184837 7.01682449674589 6.79524906481734 7.81889371564339 7.90229007185703 6.84445561421856 7.03996653924493 7.46160193199023 6.46745810138808 6.42261248210787 6.54956756524896 7.2758815013498 0.196371460699425 0.199798700506269 0.19844964097947 0.200559957821267 0.199070026601874 0.196981744880900 0.198317707514574 0.198653721472594 0.202006633222697 0.204738356014648 0.195763015556555 0.193403739609325 0.192292059130684 0.196007183689334 0.190562928647551 0.191177270041107 0.202773008084629 0.190504373468756 0.190802500395117 1 1 + 26099837 26100213 26100058.545 26096859 26100706 + gene protein_coding_gene FALSE TRUE AT1G69420.1|AT1G69420.2 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT4G15080.1); similar to Putative DHHC-type zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAN77310.1); similar to Os10g0337500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064375.1); similar to Os03g0209500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049335.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) -0.504174440002178 -4.9696591034924 0.000436263996006469 1 5.52354950132986 13.1438584536315 -0.504174440002178 0.100678053827742
AT4G34670_at 10.3781500798317 10.4500771763119 9.5796689831922 9.83085387182657 9.994921476018 10.1060961391571 9.97147243064056 10.2725535442419 10.0518030598855 10.6307595833787 10.0745999505161 10.2848688558073 9.96031707950423 9.74422184124566 10.2519774445586 9.78516801746716 9.7521940954953 9.62522341064143 10.6924226158338 0.086477404306658 0.08916971878015 0.089862711917177 0.0941538565859734 0.0868464880430515 0.0918008816922102 0.0903235579192086 0.0910022216055989 0.108557252638016 0.086477404306658 0.0940335876922264 0.086477404306658 0.0896350026843206 0.0952657430547525 0.0909624102550488 0.0874198083629643 0.0916942513566958 0.0903242102563206 0.0887642973165166 4 4 + 16549460 16549990 16549781.545 16548623 16550458 + gene protein_coding_gene FALSE TRUE AT4G34670.1 40S ribosomal protein S3A (RPS3aB) Identical to 40S ribosomal protein S3a-2 (RPS3AB) [Arabidopsis Thaliana] (GB:Q42262;GB:O82816;GB:Q42293); similar to 40S ribosomal protein S3A (RPS3aA) [Arabidopsis thaliana] (TAIR:AT3G04840.1); similar to 40S ribosomal protein S3a (S phase-specific protein BIS289) (GB:P49396); contains InterPro domain Ribosomal protein S3Ae; (InterPro:IPR001593) -0.456842636501441 -4.9692915200093 0.000436515736208591 1 5.52306353698206 20.2695490909544 -0.456842636501441 0.0716197547353254
AT1G32700_at 10.2212070564262 10.4281334703619 10.4715427386906 10.4653136703778 10.4917204177328 10.4583582693671 9.06232620308987 9.35729676047939 9.3135047356382 8.98198885480741 9.37910740300011 8.91487139604376 9.48670431425097 9.2516982656387 8.49214293261995 9.6695598721378 9.78013142990693 9.48260075722223 9.07203378068532 0.144196059263690 0.143726415849691 0.147920327983241 0.148040208445140 0.145595642322799 0.148787284024422 0.14044564489006 0.141445832454854 0.145046354408717 0.150318651823885 0.141918321768878 0.144265071631431 0.145231141385774 0.144762345908557 0.143033233534514 0.136870053258670 0.149718825903244 0.142240145820909 0.150924823905815 1 1|0 +|/ 11827976 11829386 11828605.4 11827413 11829739 + gene protein_coding_gene FALSE TRUE AT1G32700.1|AT1G32700.2 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT4G17900.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734)|similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT4G17900.2); similar to putative zinc-binding protein [Platanus x acerifolia] (GB:CAL25342.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 0.444542912047504 4.96764275350122 0.000437646788155671 1 5.5208834859448 19.3342929083471 0.444542912047504 0.0626300117460997
AT1G65370_at 3.9895190281515 4.01154774845550 4.93071758935122 4.68202067224799 5.31345196250602 4.40040890894302 4.62022694869332 3.98012139825555 4.09716624551876 5.33976853768866 5.87438616365726 6.48647340203013 5.56184044079516 5.70822714033395 6.60591474236133 5.71370860564426 5.89473091858989 5.48955084701722 6.04492058950065 0.240758184156902 0.247594557721936 0.236956001981442 0.240760806686811 0.245898001095663 0.239465056867682 0.239978192429830 0.240692034401945 0.248139058433068 0.238248770977606 0.237213437715944 0.245064183881804 0.23877287595297 0.245787037957389 0.236422978199257 0.238314365272027 0.242718161137263 0.236963029115042 0.237910049924556 1 0|1 /|- 24288432 24289097 24288731.444 24288132 24289808 - gene protein_coding_gene FALSE TRUE AT1G65370.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G65150.2); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) 0.718765788678693 4.96694848804529 0.000438123980328895 1 5.51996536117686 10.0297380271370 0.718765788678693 0.197746146561177
AT1G49000_at 3.9485796029787 4.08305456184681 3.71171282955780 3.9610738466797 4.15393032573173 4.35868492545468 2.66985447499503 2.84099151413069 4.75661988985698 3.30985012038262 3.95217606722868 4.46421099232822 3.4885765216474 4.43828278727097 4.2889362015819 3.03254216752947 4.36840955844259 3.90523572199317 3.18871260138545 0.247062847217622 0.244755635498910 0.242115764601957 0.245158830891343 0.254104816180328 0.244317018041439 0.250696499438422 0.246133529676928 0.245579696393801 0.244924604198542 0.245048693661386 0.245806605382261 0.249699061582585 0.24361560894135 0.242948121029758 0.244383476780161 0.250867567681782 0.250543678007851 0.251294006535966 1 1 - 18127266 18127662 18127474.182 18127127 18127833 - gene protein_coding_gene FALSE TRUE AT1G49000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18560.1); similar to Os02g0711400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047903.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45365.1) 0.45064957920631 4.96639075607166 0.00043850772695106 1 5.5192277315342 7.58799715490247 0.45064957920631 0.0673529026550346
AT2G14900_at 1.88567936682895 1.97128021824402 1.52469760743459 1.6375522676909 1.55571983744687 1.45324251471825 1.57366252149286 1.17951241326171 1.36518908793377 1.74968476181845 3.12757065716702 3.14698954217041 2.26887295528004 2.50579380755391 3.68431325412905 2.6188815997554 2.02227601819116 3.05409881050457 2.20272943390905 0.268624748261702 0.264687077684022 0.272604212578912 0.264936110784642 0.265881072911862 0.265817405453247 0.271832390747301 0.264450147671288 0.271350035374719 0.274780500087261 0.272161669936813 0.270635426718897 0.267217453056711 0.267580489124418 0.277377254618083 0.268023047165377 0.262141357447243 0.286642494276881 0.265852016148874 2 2 + 6411303 6412100 6411752.818 6411257 6412412 + gene protein_coding_gene FALSE TRUE AT2G14900.1 gibberellin-regulated family protein similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT5G59845.1); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.46066728978631 4.96377977516693 0.00044030894092123 1 5.51577383512792 3.88573534763028 0.46066728978631 0.0746183916735405
AT3G03120_at 5.44812510840327 5.82963708797957 6.36950913902738 6.1248265662898 6.66660306837718 6.36196691333004 5.98121085290514 6.05067660177327 4.86829936464996 4.95355240260451 5.17554742547544 5.1285505487165 5.90994502284937 5.42374204837831 4.7468716492634 5.67984753910962 5.71478558142199 5.47879597046169 5.0961753446649 0.212037538568605 0.196741455266719 0.196874516777378 0.197514095752694 0.196434571367032 0.210796934441366 0.19812793048346 0.200841021797497 0.197382303217549 0.203805350385937 0.197258243183532 0.196055055412817 0.199689891976625 0.208870212142935 0.204656468659847 0.196616202387664 0.205970159020662 0.205979101559491 0.203784657489611 3 3|0 +|/ 717365 718889 718257.5 717160 719322 + gene protein_coding_gene FALSE TRUE AT3G03120.1 ATARFB1C (ADP-ribosylation factor B1C); GTP binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins. similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT5G17060.1); similar to ADP-ribosylation factor [Daucus carota] (GB:AAW67545.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.493949514113605 4.96377634823952 0.000440311310159288 1 5.51576930107007 11.2940376308520 0.493949514113605 0.0952664948490764
AT1G72440_at 5.96865507825042 6.01922555216042 5.78382418506033 5.61181298816559 4.91671549501357 5.87554614513749 6.40389015280689 6.63059529955576 6.36473244556259 6.91640785479737 6.24753035091675 6.64041434855884 6.15301164771516 6.27395464009575 6.82468514864117 6.63529496004615 6.00949389357207 5.72258341534637 7.48485038002545 0.218806724033055 0.217912072722087 0.220557586679373 0.228642631255483 0.222504649188988 0.228668250579251 0.217992453446435 0.218358339404754 0.220576699483890 0.220445790970509 0.227216115166139 0.214749996770447 0.221398356846869 0.225164106120789 0.222644562582210 0.219823434005901 0.226335068467472 0.229082734021857 0.225217147261408 1 1 - 27272024 27272562 27272314.636 27271827 27277258 - gene protein_coding_gene FALSE TRUE AT1G72440.1 EDA25 (embryo sac development arrest 25) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17160.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein (ISS) [Ostreococcus tauri] (GB:CAL56761.1); similar to Os09g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062588.1); contains InterPro domain CBF; (InterPro:IPR005612) -0.658621330099695 -4.96354290983626 0.000440472731704711 1 5.51546044126722 12.5189670840555 -0.658621330099695 0.173305123163745
AT1G74360_at 5.36817620464456 5.11730954721769 6.85609940441497 7.33552605276424 4.01643943769857 4.73455084626953 2.51704323149123 3.02141866724467 3.57085087182041 2.66549536825886 2.43079616871143 2.41774071098638 2.81820785147409 2.61023176958078 1.8889982556006 2.76955706215499 3.17453572195771 2.73341828196133 2.74720490076718 0.238006044695732 0.246064758272164 0.227260599157402 0.238521151029092 0.236616296807349 0.244377267339325 0.218690592921546 0.221775347931901 0.227526805152388 0.218690592921546 0.228451203498346 0.222718205222853 0.221832729679403 0.222177117161984 0.222034485760313 0.218716943240011 0.231615032807162 0.227155543494 0.218690592921546 1 1 + 27961031 27961530 27961285.091 27957892 27961775 + gene protein_coding_gene FALSE TRUE AT1G74360.1 leucine-rich repeat transmembrane protein kinase, putative similar to BRL1 (BRI 1 LIKE), kinase [Arabidopsis thaliana] (TAIR:AT1G55610.1); similar to BRI1 (BRASSINOSTEROID INSENSITIVE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G39400.1); similar to BRL2 (BRI1-LIKE 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G01950.1); similar to Os03g0400800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050316.1); similar to Os07g0597200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060176.1); similar to putative brassinosteroid insensitive 1 precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC55707.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.670292851745945 4.9593829908157 0.000443359813502638 1 5.5099548681894 7.6707968113443 0.670292851745945 0.178411097083923
AT2G47440_at 8.01168778312713 8.35702174608152 7.47301979599418 8.0097080729898 8.23885486277868 8.29059470338932 9.43208054071096 9.4709990419937 10.5898476217036 9.55993302231574 10.7659769917316 10.0765666815828 10.2781453591343 10.4322030654653 9.6492355547854 9.74837294773767 8.89661356247529 9.7051291331036 10.3716781390981 0.111984542165303 0.104272519467240 0.121239801903416 0.117573887143194 0.114040769070337 0.111354487060924 0.105683988269306 0.112342909098206 0.109126565988449 0.104255847943173 0.105756789293518 0.104255847943173 0.108588458449754 0.104255847943173 0.105405898847320 0.104255847943173 0.114226787182777 0.108692037500266 0.104934684050149 2 2 + 19478283 19478706 19478473.545 19476789 19478956 + gene protein_coding_gene FALSE TRUE AT2G47440.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02100.1); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G62570.1); similar to tetratricopeptide repeat, putative [Medicago truncatula] (GB:ABE90991.1); similar to tetratricopeptide repeat, putative [Medicago truncatula] (GB:ABE78091.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.522346050780406 -4.95875032140405 0.000443800651012962 1 5.50911727201262 18.4694208215704 -0.522346050780406 0.111009072042143
AT4G39200_at 9.48627023882676 9.61918744968334 8.66176251539583 8.85061964219028 9.16505827250178 9.22611876866386 9.19206628837404 9.46153012948248 9.75685592301242 9.35925461954135 9.22431136512754 9.4450541094811 9.01090841604926 9.2483086406009 9.71877078203938 8.79554324056732 8.72211392162949 8.93170230051077 9.56357434608424 0.122890094532114 0.115225378087723 0.122119124778813 0.115953149686729 0.117638172365859 0.118412146473975 0.116236656003885 0.116411300333718 0.117722317092887 0.117791011197123 0.112358575920971 0.119957594234073 0.126728793098071 0.117819636158404 0.124116779729637 0.115267047087088 0.116414386239750 0.122747528528140 0.117677002090916 4 4 + 18257582 18258394 18258084.818 18257330 18258674 + gene protein_coding_gene FALSE TRUE AT4G39200.1 40S ribosomal protein S25 (RPS25E) Identical to 40S ribosomal protein S25-4 (RPS25E) [Arabidopsis Thaliana] (GB:Q9T029); similar to 40S ribosomal protein S25 (RPS25B) [Arabidopsis thaliana] (TAIR:AT2G21580.1); similar to S25 ribosomal protein [Medicago truncatula] (GB:ABE85391.1); contains InterPro domain S25 ribosomal protein; (InterPro:IPR004977) -0.443339796391165 -4.95864784208171 0.000443872101151746 1 5.50898159208853 18.5563186930798 -0.443339796391165 0.0623172571968632
AT1G07230_at 7.94815270818797 8.32036646989795 8.07925477270102 8.45867029380185 8.64484986563183 8.5331804769195 7.58668010584338 7.86433798740158 6.72445732369606 7.25390828015772 7.4637082614656 7.58114899569284 7.66435982628696 7.68975658703476 7.38667943248815 7.77707775968151 8.0581694241064 7.7347901513562 7.4561324565387 0.175514805536898 0.166577982077269 0.174071580561718 0.165406348456528 0.167233579434691 0.18023888146857 0.167297701169885 0.161321899420414 0.214145841940000 0.184161773310833 0.16350423661045 0.162744913402034 0.171051391674858 0.161356253774830 0.171989569223098 0.165317438084015 0.174937879958109 0.178906047448852 0.171355657106238 1 1|0 -|/ 2220557 2221745 2221041.8 2220252 2222981 - gene protein_coding_gene FALSE TRUE AT1G07230.1 phosphoesterase family protein similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT2G26870.1); similar to Os03g0826600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051765.1); similar to putative phospholipase [Oryza sativa] (GB:AAK82449.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) 0.511866576198695 4.95716848299198 0.000444904888961976 1 5.50702275100416 15.5865835808289 0.511866576198695 0.105558121044595
AT1G24625_at 6.72915781068126 7.53004011869336 6.82221168275808 6.65009205757756 7.30779641737654 7.1173944814307 5.89730629883437 6.48414793981958 3.47331784997783 5.06213532552685 5.50678976959102 5.48107095782592 5.83003345574359 5.69196564666942 5.38518192698525 5.17829812815505 4.87632651616163 4.76970401896142 4.42058782336908 0.231415490115912 0.23119754564342 0.235831288132255 0.231272793820724 0.232412733149721 0.227333737263257 0.245285216434867 0.236145149015886 0.235765655250749 0.231524647092852 0.227956933955381 0.225864911895347 0.235431275267644 0.245317236203855 0.228693185401842 0.227356182273309 0.241159547923157 0.229167555174898 0.229704805402283 1 1 - 8726005 8726505 8726232.182 8725869 8727198 - gene protein_coding_gene FALSE TRUE AT1G24625.1 ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 7 (ZFP7) [Arabidopsis Thaliana] (GB:Q39266;GB:O04755); similar to ZFP4 (ZINC FINGER PROTEIN 4), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G66140.1); similar to zinc finger protein (GB:AAA87300.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.667725793666161 4.95713153834234 0.000444930713697668 1 5.5069738270577 11.6465691686312 0.667725793666161 0.177469531736921
AT1G71960_at 3.17530747592805 3.12062553039985 3.54819428243665 3.62130509533940 3.65092207018191 3.41539870246667 3.20673323218894 3.59551785714431 2.14429260308738 2.20820376122401 2.58182511883627 2.98214409582544 2.85571022998 3.15999633495373 2.96949663896287 3.12416810086245 3.41332621977223 2.74191966247582 2.62636395387082 0.207075446898576 0.209295782839833 0.219532143346834 0.223658028966756 0.210967781597707 0.225358336167226 0.207075446898576 0.218148959655514 0.219781195331605 0.220733983512341 0.207848720505987 0.207075446898576 0.207959062779983 0.224219807644225 0.207075446898576 0.207075446898576 0.216192939127323 0.207075446898576 0.211792214313983 1 1 - 27086380 27086815 27086616.545 27086056 27091910 - gene protein_coding_gene FALSE TRUE AT1G71960.1 ABC transporter family protein Identical to White-brown complex homolog protein 26 (WBC26) [Arabidopsis Thaliana] (GB:Q84TH5;GB:Q949Y4;GB:Q9C8W6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transporter protein, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96020.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.468347770586035 4.95540448218869 0.000446139716434345 1 5.50468650166729 6.06918056722872 0.468347770586035 0.080234690678932
AT3G04120_at 11.9287467703916 12.0309851218378 12.2917342496919 12.2984155982520 11.9586354002308 11.6298717305643 12.0324515748368 12.0298863911055 11.1619302778240 11.1917703698834 11.9673714528990 12.1872921309842 11.9378201405417 11.9518691997121 12.1759509370124 11.8182113509191 11.7156122816121 11.6632186832734 10.9075747185496 0.07382017555722 0.0715029662207916 0.0737638020974126 0.0723367227786985 0.0733378742448632 0.0791911063293672 0.073546086934333 0.0713223625375294 0.0761970970307553 0.0746009542883625 0.0713223625375294 0.0716472824336055 0.0737266354557114 0.0747976884322562 0.0719489113799877 0.0713223625375294 0.0807672938485456 0.0758298236068982 0.0749822450300204 3 3|0 +|/ 1082264 1083103 1082722.889 1080957 1083537 + gene protein_coding_gene FALSE TRUE AT3G04120.1 GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. Identical to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) (GAPC) [Arabidopsis Thaliana] (GB:P25858;GB:Q42352;GB:Q9M8W8); similar to GAPC-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G13440.1); similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GB:P04796); similar to cystolic glyceraldehyde-3-phosphate dehydrogenase (GB:AAA32794.1); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) 0.439611631754381 4.95491246439461 0.0004464847823401 1 5.50403477250504 23.5322208850496 0.439611631754381 0.0595945216745416
AT4G23040_at 6.08982903640262 6.15432607078964 6.07966350406687 5.51700991214371 6.04165153588771 6.32499686906564 4.63894468191715 4.80050999552695 4.51663461910095 4.64528136838368 4.99352646368692 4.81432401118344 4.73942498436243 5.32432224937112 5.0091243284596 5.05305972626143 5.16300097626154 5.05382722138715 4.44951591624339 0.246124513538205 0.249488309356404 0.235580674306344 0.232624800130239 0.236529737617281 0.243099158270291 0.238937908334411 0.230871257480352 0.242682929000740 0.242667231736610 0.239367054811568 0.235463336825802 0.233114156725911 0.232764721331633 0.237816065023418 0.235639359440745 0.24300280610432 0.244848882832679 0.241054329067724 4 4|0 -|/ 12075733 12076777 12076180.7 12075562 12078753 - gene protein_coding_gene FALSE TRUE AT4G23040.1 UBX domain-containing protein similar to SAY1 [Arabidopsis thaliana] (TAIR:AT4G11740.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46494.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.525805143172129 4.95329221466061 0.00044762310509285 1 5.50188827681726 10.4838515572406 0.525805143172129 0.113099777275138
AT1G14360_at 7.68791042268387 8.26266729801741 8.76145017595469 9.3069914434511 8.00919728816004 7.53537886231528 5.92151650568331 5.97475254327775 5.90086161200975 5.48401390015893 5.34306612412923 5.56500788927615 4.93358077595427 4.99133321976001 5.41758793591132 5.12996856712588 5.61829415505313 5.18886090916261 5.00305604183599 0.219112683018729 0.221295922090701 0.228678545904246 0.224191246361292 0.225097004847679 0.225164040161918 0.220831906430461 0.227901898896667 0.224988252723568 0.224070382040874 0.222048458653682 0.219112683018729 0.226031020374143 0.224150851913649 0.223782942355930 0.219112683018729 0.224004246528081 0.225806748949477 0.235942008954087 1 1|0 -|/ 4911414 4912113 4911662 4911088 4913147 - gene protein_coding_gene FALSE TRUE AT1G14360.1 ATUTR3/UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transporter similar to ATUTR1/UTR1 (UDP-GALACTOSE TRANSPORTER 1), UDP-galactose transporter/ UDP-glucose transporter/ pyrimidine nucleotide sugar transporter [Arabidopsis thaliana] (TAIR:AT2G02810.1); similar to hypothetical protein MtrDRAFT_AC149601g16v1 [Medicago truncatula] (GB:ABD32994.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.626180672883189 4.95315134959966 0.000447722216137823 1 5.50170163764645 13.0505362166337 0.626180672883189 0.160045039571514
AT1G17410_at 3.98344826635684 4.14091737176192 3.20301693019389 3.20226131425583 4.12536591617345 3.86130832559813 4.201119387758 3.85201735444236 3.84694644491486 3.68411548551972 3.45809883074959 3.09748286251714 3.00287383456742 3.43632787925098 3.36479866335257 3.63895658771526 3.34218725338201 3.57513946184983 4.03426786696745 0.250395251007903 0.246862772076159 0.270333947848463 0.246862772076159 0.253365079303052 0.26374350709386 0.246862772076159 0.264999683517473 0.255118007660061 0.246862772076159 0.25956051201859 0.24935931577647 0.254343019260449 0.260008876381445 0.249137561591241 0.246862772076159 0.253675988029258 0.252150556899888 0.251513907057108 1 1|0 -|/ 5968809 5969366 5969129.143 5968566 5969968 - gene protein_coding_gene FALSE TRUE AT1G17410.1 nucleoside diphosphate kinase family protein similar to NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2), ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana] (TAIR:AT5G63310.1); similar to Os02g0565100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047164.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_790390.1); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) -0.468507117159349 -4.95271067180021 0.000448032421850146 1 5.50111773873272 7.43097841038777 -0.468507117159349 0.0805021820608421
AT4G17570_at 7.15238676869823 7.73440556896662 7.79945920008258 7.93672327565398 8.54318143025472 7.88844820784943 7.42382136153988 7.32796497963516 6.49327335310071 6.21593782964191 6.52976271260219 7.01376035021498 7.0652478144994 6.80985709437829 6.38371366898691 7.03212800736292 7.09048399470905 7.21863972044775 6.18847996988809 0.22133514342959 0.211644220272465 0.215667752230317 0.211051548165069 0.211208031270231 0.217871560111610 0.211410129631049 0.218580282302096 0.234131910425177 0.214370915744141 0.212736638391144 0.21468134440713 0.219105881848893 0.214799935967252 0.222471772787189 0.207623617898857 0.224304781481789 0.212057443918941 0.2233373848415 4 4|0 -|/ 9784345 9785159 9784695.3 9783897 9787433 - gene protein_coding_gene FALSE TRUE AT4G17570.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 28 [Arabidopsis Thaliana] (GB:Q8W4H1;GB:O23598); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G47140.1); similar to GATA zinc finger containing protein [Brassica oleracea] (GB:ABD65071.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.613013572470075 4.95214896838552 0.000448428150411690 1 5.50037343047781 14.3218886263903 0.613013572470075 0.154344130778249
AT2G36990_at 9.22993319851916 9.38449980556688 8.68960718381588 8.72944960719533 9.2077920768923 9.09193535808393 9.74345396414257 9.521720395959 9.58839084817613 9.6495204548306 9.29888866254012 9.6046346854676 9.11642043070682 9.03784571069731 9.62442746387056 9.34338966654857 9.26197773376944 8.92779802627634 9.55084898259801 0.114707221791636 0.106333814788769 0.119671445695956 0.115429646516006 0.109680312037764 0.111554118795539 0.109405226665427 0.107442187111017 0.109275982791040 0.108166257921842 0.110476817493187 0.106333814788769 0.110036567110032 0.113485281845653 0.110830505453168 0.107523322626605 0.120766680972244 0.108273630780891 0.111362898757931 2 2|0 -|/ 15544582 15545313 15544953.6 15544337 15547218 - gene protein_coding_gene FALSE TRUE AT2G36990.1 SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcription factor Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to Os08g0242800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061343.1); similar to sigma factor SIG6; ZmSIG6 [Zea mays] (GB:AAD17856.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.429768207800179 -4.95078885708344 0.000449387900994469 1 5.49857092603956 18.6363870617816 -0.429768207800179 0.0513557929063585
AT4G32040_at 8.80414556302932 8.67245162869163 9.02857170473251 8.871817777275 9.30692965536684 8.97856662497309 8.44666505734042 8.08840021098526 7.93138870370567 7.47973663394801 8.02477849259796 7.84608340892304 8.08209853927105 8.01155363735498 7.77013619279078 8.2088093573716 8.24725506811664 8.08992603860234 7.41117972446559 0.159893759858821 0.158360418591837 0.160597095318312 0.161482653612887 0.160842776438887 0.161544912251198 0.155259640853330 0.159490756487434 0.177115288127748 0.161750544391936 0.162124601602083 0.155619516939404 0.159833403977146 0.160861089029442 0.165871865200203 0.153066227327707 0.169596519685119 0.162822666444278 0.166919577019491 4 4|0 +|/ 15495098 15495881 15495508.1 15494071 15496362 + gene protein_coding_gene FALSE TRUE AT4G32040.1 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription factor A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. Identical to Homeobox protein knotted-1-like 5 (KNAT5) (Homeodomain-containing protein 1) (KNAT5) [Arabidopsis Thaliana] (GB:P48002;GB:O49387); similar to KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana] (TAIR:AT5G25220.2); similar to Homeobox protein knotted-1-like 3 (KNAP3) (GB:O04136); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain KNOX1; (InterPro:IPR005540) 0.485600448373664 4.94902101418224 0.000450638610820074 1 5.49622757753022 16.5959510840917 0.485600448373664 0.0912592355307235
AT3G14000_at 2.85042199164264 3.26913576875267 1.39219846345465 1.87788719958173 1.93634928824656 2.08209876808257 2.59416206830215 3.08585766914011 2.22286411476302 2.48577333099570 1.91942506257778 2.33695263644408 2.81492272246254 2.54339956642277 2.32358007190609 2.18954790461158 1.54777913155002 2.12998771203968 2.09662135844174 0.191033321779439 0.19789490551974 0.195284099810829 0.196584200504362 0.191530264930412 0.195015335603361 0.194749838595647 0.197820504270868 0.200350532568047 0.207036238384772 0.195148899125368 0.201475724192631 0.191033321779439 0.204050842542101 0.194570085497196 0.196368050927708 0.199192471068591 0.203241353726160 0.197025875888588 3 3|0 -|/ 4631344 4631831 4631562.778 4630876 4633923 - gene protein_coding_gene FALSE TRUE AT3G14000.1|AT3G14000.2 ATBRXL2/BRX-LIKE2 Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. similar to ATBRXL4/BRX-LIKE4 (BREVIS RADIX-LIKE 4) [Arabidopsis thaliana] (TAIR:AT5G20540.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO66543.1); similar to Os08g0462700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061986.1); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591) -0.585240597508178 -4.9481848019256 0.000451231494114005 1 5.49511894977638 4.63307337835137 -0.585240597508178 0.142096980146473
AT1G01120_at 10.0258327126906 10.1741761337321 11.0384653019140 10.9181448070466 11.3697876496158 11.2976134074185 11.4462031570319 11.5894502310135 11.5319359087999 11.3983190749337 12.4387085163023 12.1348980630810 12.2660664663711 12.3130714167863 11.5885882918858 11.6594393566988 11.4735107864633 12.0183894626534 11.5443324782895 0.0814865333657745 0.077816259543462 0.0843651427685743 0.084439114434093 0.0784947901054343 0.0847479085690737 0.0785390292598404 0.0796790243916337 0.0881084821712139 0.078857519375148 0.0817237389478955 0.077816259543462 0.077816259543462 0.0812272141996818 0.0826019055160081 0.077816259543462 0.0871896106438957 0.0804174059552414 0.0788735572586684 1 1 - 57417 57967 57686.364 57269 59167 - gene protein_coding_gene FALSE TRUE AT1G01120.1 KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase Encodes a condensing enzyme (3-ketoacyl-CoA synthase) which is involved in the critical fatty acid elongation process in wax biosynthesis. Identical to 3-ketoacyl-CoA synthase 1 (EC 2.3.1.-) (EC 2.3.1.119) (KCS-1) (Very- long-chain fatty acid condensing enzyme 1) (VLCFA condensing enzyme 1) (KCS1) [Arabidopsis Thaliana] (GB:Q9MAM3;GB:Q56YX9;GB:Q9ZTK3); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65207.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABD32702.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65206.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.421071061952126 4.94489101491106 0.000453574857407757 1 5.49075092363812 22.7215157745768 0.421071061952126 0.0431637456127362
AT1G09340_at 11.8744278714286 11.8513695344482 11.3658701896472 11.3282870110822 11.5637164311766 11.2331798049438 12.7927542226898 12.5539532269435 12.5864577879890 12.7825015993442 12.8004530485630 12.9861189410155 12.4282357381996 12.624563923371 12.8699683539547 12.9011460185206 12.2552817500382 12.6768404316414 12.7455057635606 0.078916732754478 0.0753282781895182 0.0777391107889994 0.0776761383372253 0.079124354148713 0.0820419291114035 0.0774958717669137 0.0802970388357244 0.0801316742574889 0.0814975683589572 0.0778656150711262 0.07636849856044 0.076441213260296 0.0775414269421256 0.0783597078783356 0.0768910894771481 0.078272322256644 0.082214520736653 0.0785138098512804 1 1|0 +|/ 3017127 3017985 3017539.7 3015330 3018236 + gene protein_coding_gene FALSE TRUE AT1G09340.1 catalytic/ coenzyme binding similar to mRNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G63140.1); similar to 38 kDa ribosome-associated protein precursor [Chlamydomonas reinhardtii] (GB:AAO22242.1); similar to Os12g0420200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066657.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.453679272983337 -4.94472223569782 0.000453695281295117 1 5.49052704654345 24.5192686578588 -0.453679272983337 0.0709786945230823
AT3G10600_at 2.30635286222816 2.31071341523155 2.09685761680395 2.417623834401 2.00058592520909 2.23492520474867 3.41993044733126 3.89740117691905 2.35228285005045 2.63127242114964 2.32341780718926 2.31048309332179 2.38114747873383 2.39443479976144 2.44159857188712 2.52525518554461 2.50998649616741 2.31876369109244 2.91488300231322 0.197874718199341 0.198961100454663 0.213654385824847 0.202114868252846 0.2026484440429 0.197333136126072 0.199806767974098 0.209123408511754 0.200062076681506 0.210079396052024 0.197724008563904 0.201299053284215 0.203987550249043 0.201137900965396 0.198305822512148 0.197333136126072 0.210581177106347 0.200982926211 0.197333136126072 3 3 + 3315328 3317034 3316705.273 3313974 3317167 + gene protein_coding_gene FALSE TRUE AT3G10600.1 CAT7 (CATIONIC AMINO ACID TRANSPORTER 7); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At3g10600) similar to ATCAT6/CAT6 (CATIONIC AMINO ACID TRANSPORTER 6), amino acid transporter/ cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G04770.1); similar to Amino acid permease family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96501.1); similar to Os11g0155500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065789.1); similar to amino acid transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAX92723.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -0.514139098756181 -4.94422812354269 0.000454048024442617 1 5.4898716025753 5.10227313450909 -0.514139098756181 0.10748954076669
AT2G37860_at 7.3307148023507 7.34251420725362 6.38467209041308 6.31811716971105 7.19312282032138 6.15344549949309 8.27717069303416 8.15411346834555 7.43191233893324 8.084807283571 7.76703625038618 8.17800212108844 7.55034765104997 7.78481280122479 7.97612186909189 7.76786806977176 7.31114842094108 7.41399620047244 7.90123269683679 0.183958963388088 0.179249780451018 0.189501090333294 0.186445593183680 0.187533246250712 0.21264997942799 0.188787566840166 0.184516435884872 0.191585244705195 0.178035877256802 0.180344826716934 0.180138061975857 0.176984981098444 0.188763041368039 0.186398129089272 0.178332269232453 0.185602812915982 0.198765876046228 0.177019598744094 2 2|0 +|/ 15864976 15865754 15865351.625 15863708 15865998 + gene protein_coding_gene FALSE TRUE AT2G37860.1|AT2G37860.2|AT2G37860.3 LCD1 (LOWER CELL DENSITY 1) Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to Os07g0240300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059263.1); similar to OSIGBa0153E02-OSIGBa0093I20.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67884.1); similar to unknown [Euphorbia esula] (GB:AAF31706.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to Os04g0524400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053349.1); similar to OSIGBa0153E02-OSIGBa0093I20.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67884.1); similar to unknown [Euphorbia esula] (GB:AAF31706.1) -0.675553165602525 -4.94235660017918 0.000455386722676908 1 5.4873886166637 14.9065592335905 -0.675553165602525 0.181554120914746
AT2G43710_at 10.2156557431356 10.4356937487363 10.1659732932325 10.2731213106303 10.3535832102502 10.2080052406087 11.3350965841286 11.4649390317551 10.7857894200379 11.0023016811083 10.7462622452300 10.5997385082123 10.7974737146571 10.6060402919353 10.4978977883459 10.7867626055270 10.7321036828004 10.6207149730408 10.9860821043020 0.0725122434631442 0.0683819383100104 0.0705094221232741 0.0718119449635337 0.0720968019353722 0.0730038871617009 0.0704997461394312 0.0704877804865419 0.082611603107215 0.0712620040286747 0.0683352974032866 0.0680040187363929 0.0704568799107525 0.0684721763813165 0.0692592343311077 0.0680040187363929 0.0707542842922513 0.0744893287765297 0.0692250017972896 2 2 + 18129020 18129453 18129250.545 18127033 18129966 + gene protein_coding_gene FALSE TRUE AT2G43710.1|AT2G43710.2 SSI2 (fatty acid biosynthesis 2); acyl-[acyl-carrier-protein] desaturase Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02630.1); similar to Stearoyl-acyl carrier protein desaturase [Brassica napus] (GB:CAA52786.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:P29108); similar to plastidic delta-9-stearoyl-acyl-acyl carrier protein desaturase [Brassica juncea] (GB:AAD40245.1); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Fatty acid desaturase, type 2 subfamily; (InterPro:IPR005803)|similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02630.1); similar to Stearoyl-acyl carrier protein desaturase [Brassica napus] (GB:CAA52786.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:P29108); similar to plastidic delta-9-stearoyl-acyl-acyl carrier protein desaturase [Brassica juncea] (GB:AAD40245.1); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Fatty acid desaturase, type 2 subfamily; (InterPro:IPR005803) -0.432012844427953 -4.94110449686556 0.000456284679689793 1 5.48572707892341 21.3555578343270 -0.432012844427953 0.0541606989157286
AT4G16110_at 3.58239257586500 3.77266138730109 4.34245913137512 3.93281876537551 4.28742324788405 4.4781220398101 3.35764351427321 3.44394177396196 2.78564505104167 2.73776040769517 2.97187512304479 2.83954134753596 3.6842051577324 3.13924763531213 2.11146508042947 3.20088446499573 3.10536266080982 2.74923169049293 2.70803021079282 0.233454172950492 0.232154417837775 0.242101690774361 0.246357607842909 0.234713617326939 0.249917739651819 0.229925071873883 0.229925071873883 0.239758486341558 0.236947649121672 0.229925071873883 0.232405474915727 0.230440845916082 0.241620962424906 0.236757921260231 0.229925071873883 0.237285436089457 0.252034048701828 0.248904146615239 4 4 + 9115065 9115556 9115281.273 9112947 9115676 + gene protein_coding_gene FALSE TRUE AT4G16110.1 ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2); transcription factor/ two-component response regulator Encodes a pollen-specific transcription factor involved in the expression of nuclear genes for components of mitochondrial complex I in Arabidopsis. Acts in concert with other type-B ARRs in the cytokinin signaling pathway. AHK3 mediates cytokinin-induced phosphorylation of ARR2 on the Asp-80 residue. This phosphorylation plays a positive role of ARR2 in cytokinin-mediated control of leaf longevity. similar to ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT3G16857.1); similar to type-B response regulator [Catharanthus roseus] (GB:AAQ10678.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.476230369230908 4.93977021239212 0.000457243634096753 1 5.48395617973102 6.75920207192444 0.476230369230908 0.0861493977398878
AT2G20210_at 2.73602986252488 2.85945803070111 2.75175986014587 2.69158584615952 3.09639443606272 3.13588331802393 3.66813325331151 3.42311188325317 3.06552400640269 3.09840635042247 2.77790629121232 2.38478665013515 2.62363102127658 2.77822502542402 2.36193195794473 2.57331769503951 3.01594488361761 2.73736030052818 3.60465505243697 0.152535402422309 0.153985173348205 0.153595038623739 0.156008735610798 0.152970952357854 0.154503333517985 0.156663612416533 0.155193910548083 0.154254376306140 0.15674309912001 0.152244783117914 0.152811668052298 0.152446774872169 0.152536666583367 0.152179282469004 0.152195982555061 0.158108465569480 0.156509171576296 0.155411793892345 2 2|0 -|/ 8728700 8732068 8730227.8 8728518 8732208 - gene protein_coding_gene FALSE TRUE AT2G20210.1 leucine-rich repeat family protein similar to EMB2004 (EMBRYO DEFECTIVE 2004), protein binding [Arabidopsis thaliana] (TAIR:AT1G10510.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96837.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor type; (InterPro:IPR007091); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor subtype; (InterPro:IPR003590); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.426167275311551 -4.93685110367597 0.000459349043536764 1 5.48008075266574 6.00171111855683 -0.426167275311551 0.0490848034439764
AT2G16660_at 10.9336415581417 11.0662414980527 10.3374415931244 10.4937006288570 11.3487100009854 11.3234785172752 8.72883893229084 8.62925237583437 11.3704857189067 10.6332636345419 11.7374122139832 9.66659964003066 9.95831111460527 10.9499477096537 10.5592582204835 9.27854922950066 10.0371583636258 10.7997792895637 9.7217864115116 0.100818094312573 0.101425620513707 0.105654306944682 0.103821220028733 0.10141774394057 0.101797756001137 0.108123389523544 0.102770348663278 0.108651557540517 0.100803397095368 0.101630823041833 0.102530151328084 0.0999406809676818 0.102451598349996 0.103731945140494 0.108098273970136 0.108104927863513 0.0990927422968424 0.105952754612020 2 2 - 7226113 7227474 7226602.273 7225788 7228707 - gene protein_coding_gene FALSE TRUE AT2G16660.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT4G34950.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os09g0536700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063787.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.417268739170659 4.93656540204777 0.000459555655936558 1 5.47970137188283 20.8319409185706 0.417268739170659 0.039672093911364
AT3G01470_at 9.70994274453532 9.6287050092393 10.2376395339728 10.2045380347118 10.6818190777195 10.3686425697813 10.1120366529656 10.0162210412101 9.32496936596434 9.52670348544069 9.81463387591448 9.7225993918646 10.2565488663787 9.89208146257488 9.5472040272749 9.95118486121478 10.3195903948215 10.0498020100297 9.88051639980536 0.09196731396002 0.0871113043127088 0.0876449354810969 0.0876253455455077 0.0903776960285082 0.0898142250361291 0.0903634241674874 0.0914816122005755 0.0934873140250684 0.0923817162213808 0.0899436850062445 0.0908779473055849 0.0926268050111936 0.0907956053676894 0.0892359890309669 0.0872817498012602 0.0918801487607057 0.088190094915471 0.0882065338129506 3 3|0 -|/ 182660 183432 183001.5 182457 184410 - gene protein_coding_gene FALSE TRUE AT3G01470.1 ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. Identical to Homeobox-leucine zipper protein HAT5 (Homeodomain-leucine zipper protein HAT5) (HD-ZIP protein 5) (Homeodomain transcription factor ATHB-1) (HD-ZIP protein ATHB-1) (HAT5) [Arabidopsis Thaliana] (GB:Q02283); similar to ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 13), transcription factor [Arabidopsis thaliana] (TAIR:AT4G40060.1); similar to homeodomain leucine zipper protein CPHB-5 [Craterostigma planta (GB:AAL57495.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Trp repressor/replication initiator; (InterPro:IPR010921); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.436621318123924 4.93376207410709 0.000461588172533238 1 5.4759780856 19.8807440971816 0.436621318123924 0.0586743197815642
AT3G15020_at 6.93289157290955 6.86645608859058 7.56891882819443 7.62003890156084 6.83510396144327 6.61877646237046 8.57444679351517 8.59304016187655 5.9893605566391 7.04445873385842 7.53972977886007 8.15457657343209 7.59880279600369 7.91952730725853 8.16955123350815 7.33101856098929 7.38703935533206 7.46246268775479 5.80431258259842 0.201807156565610 0.204922038023318 0.202464388974601 0.200092885511712 0.202816329119596 0.223816948364118 0.206785104709252 0.206348389166531 0.216160721576747 0.205068794647760 0.205381325999538 0.199289421493384 0.204100136893331 0.201855638192469 0.210081888183480 0.199460403309379 0.210989584273838 0.201579229112373 0.200773692669382 3 3|0 +|/ 5056929 5057895 5057390.6 5056075 5058255 + gene protein_coding_gene FALSE TRUE AT3G15020.1|AT3G15020.2 malate dehydrogenase (NAD), mitochondrial, putative Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana] (TAIR:AT1G53240.1); similar to Malate dehydrogenase, mitochondrial precursor (GB:Q43744); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097)|Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana] (TAIR:AT1G53240.1); similar to Malate dehydrogenase, mitochondrial precursor (GB:Q43744); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) 0.417481064889818 4.93293760541876 0.000462187749501886 1 5.47488278770986 14.4385670101448 0.417481064889818 0.0402776079720788
AT2G02740_at 3.86286783703482 3.54071372118572 3.20343167236276 3.68652254296928 3.23356831540127 3.33911980058465 4.2377654928099 4.59074613502308 3.40518403616659 3.70970809160912 2.81950024983635 2.99426348479949 3.12786837276878 2.91457132806726 3.2189077276992 3.16366736543849 3.43360502205452 3.08034759583903 3.30002007057867 0.212544956606693 0.209313445576145 0.21028839969833 0.209476846115572 0.214514597378876 0.218084837751742 0.222297621768521 0.226855690659749 0.209748216095568 0.211975669041983 0.212206616627948 0.211327039018838 0.212099115978673 0.222764308779854 0.210943058180599 0.210681586940465 0.221933575368517 0.209313445576145 0.209313445576145 2 2|0 +|/ 769424 770934 770025.778 769343 771247 + gene protein_coding_gene FALSE TRUE AT2G02740.1|AT2G02740.2 ATWHY3/PTAC11 (A. THALIANA WHIRLY 3); DNA binding|ATWHY3/PTAC11 (A. THALIANA WHIRLY 3) Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to the plastid and not the nucleus. similar to ATWHY1/PTAC1 (A. THALIANA WHIRLY 1, PLASTID TRANSCRIPTIONALLY ACTIVE1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G14410.1); similar to DNA-binding protein p24 [Solanum tuberosum] (GB:AAF91282.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Plant transcription factor; (InterPro:IPR013742) -0.53495435991123 -4.93045055044472 0.000464001398654426 1 5.47157802874115 6.99470633605361 -0.53495435991123 0.119005316586971
AT4G38960_at 4.95845060556781 4.94287381328237 5.39597143500457 5.6534084232118 5.36785436968561 5.73182176846384 6.67411338669998 6.70754645106641 6.31347391770058 5.80941367304344 5.66470280192378 5.23773371987074 5.45163478655773 5.53623788751834 4.97169790198663 5.83530578605955 6.30119933489758 5.00971016360773 6.29990457126976 0.205660096196098 0.194562858642086 0.195093492630494 0.198567176888468 0.194962628109535 0.190160552293254 0.194454026631506 0.190973807250187 0.197462802739754 0.201835763498978 0.197174227955124 0.191992533650124 0.198045408551092 0.194838690749186 0.198434994094342 0.191524583065512 0.200591392401646 0.203951591676795 0.209553956552215 4 4|0 +|/ 18161570 18162979 18162119.1 18161347 18163300 + gene protein_coding_gene FALSE TRUE AT4G38960.1|AT4G38960.2 zinc finger (B-box type) family protein|zinc ion binding similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT2G21320.1); similar to Os09g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063733.1); similar to Os04g0540200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053439.1); similar to H0115B09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67391.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.461692493965593 -4.93032450217382 0.000464093517604417 1 5.47141050850299 11.4999842908598 -0.461692493965593 0.077412996863086
AT3G07400_at 6.07688087488186 6.0529696954215 5.31916862698646 4.9599116972565 5.5350017985485 5.39348077541793 5.88174320558458 5.78263335117408 5.8009682693362 5.86150033746769 6.21570735499944 6.00602066286273 5.78219686080579 5.77330919537048 5.3259717851366 5.89951575444903 4.8756765307386 5.28665979342549 6.03285075010866 0.200585987340230 0.208709096322787 0.204922261453013 0.203685895905000 0.201841108009072 0.213665948883423 0.205191168245416 0.204935502529458 0.243460036532836 0.207709783531229 0.197178888052826 0.202078238790073 0.207111205174838 0.213244594216629 0.205648039649736 0.199322406979397 0.225184264409432 0.215029580988916 0.205555598111638 3 3 + 2371572 2372207 2371912.818 2367308 2372451 + gene protein_coding_gene FALSE TRUE AT3G07400.1 lipase class 3 family protein similar to lipase class 3-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22465.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.449736800313575 -4.92999679318453 0.000464333105276745 1 5.47097496460264 11.3972597670894 -0.449736800313575 0.0691110758062038
AT1G23710_at 4.84213974078982 4.90749508141404 5.16702944726916 5.08732998823594 5.22227414534234 5.3355503952781 4.55963414539445 4.60313189926225 4.19996701805957 3.42828145162257 4.38927328225016 4.54245295864603 4.31718421442397 4.11296291727793 3.60865669736613 4.45981957231883 4.40304053207786 3.60680516276189 3.89014054076196 0.225402526462152 0.215518428657208 0.226122935785936 0.228418829860134 0.218875226429609 0.232722660775469 0.220446815157992 0.225964814894852 0.246479118539992 0.222121294493737 0.218041608657765 0.219325791972160 0.219684269378006 0.221426883807611 0.225103567479084 0.222352874563763 0.222929866314666 0.226308648844747 0.22160993364765 1 1 + 8385694 8386179 8385915.545 8385240 8386415 + gene protein_coding_gene FALSE TRUE AT1G23710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70420.1); similar to Os01g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043675.1); similar to Protein of unknown function DUF1645 [Medicago truncatula] (GB:ABE93113.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 0.407753595487614 4.92840701207721 0.000465497249347892 1 5.46886178381621 8.97531681568412 0.407753595487614 0.0275515241117241
AT3G27960_at 3.64746120188344 3.27486572787690 4.21238796625923 4.19164034504330 3.9761302227211 4.56945717688224 4.27892595245188 3.87719360963563 4.80378811404593 4.00575101041163 6.18964252038276 4.55199059231305 4.68449289150078 5.38900485110766 4.77662958713531 4.17475137576575 4.96561229748087 4.90920281302056 3.99391141841101 0.209155645793978 0.205430751703550 0.203745027745333 0.206851528002572 0.206935125944704 0.206486849973980 0.202300177777501 0.209383228473869 0.216206532850606 0.215605391819815 0.205597365966589 0.202300177777501 0.205880718188116 0.208019251496752 0.210082552451017 0.203826006149595 0.215422800097385 0.204101347395397 0.207093225431698 3 3 - 10381797 10382358 10382125.182 10381617 10384329 - gene protein_coding_gene FALSE TRUE AT3G27960.1 kinesin light chain-related similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT1G27500.1); similar to kinesin light chain-related [Musa acuminata] (GB:ABF70051.1); similar to glycoside hydrolase family 17 protein [Musa balbisiana] (GB:ABF70142.1); similar to similar to A. thaliana protein BAB01483 similar to kinesin light chain [Hordeum vulgare subsp. vulgare] (GB:AAM13438.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-related region; (InterPro:IPR011595); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.577570661614997 4.925258139481 0.00046781218053018 1 5.4646748883969 8.61499913219982 0.577570661614997 0.139808848387748
AT1G69526_at 2.49834935323828 2.07569300310862 2.47591851835849 2.15404222335849 2.39536307132113 2.26883849365076 5.12970724150806 3.81668801228138 4.19099018440699 3.97517564908062 3.67252043200383 3.23845109682439 3.30901809224779 3.77601952578819 3.23003498920631 3.97486804937533 3.56130440430915 3.01793141787883 4.09721350670416 0.219748210802662 0.216065297931435 0.219153332525795 0.225509302511972 0.220308611737689 0.218486118396490 0.223065123182104 0.216981933790688 0.231061715755104 0.218258893572670 0.216421243820545 0.218955753223148 0.214873137395073 0.222955916515479 0.218530741967817 0.219164641840862 0.225767759941145 0.214873137395073 0.219732394290006 1 1 + 26135872 26136565 26136319.273 26134957 26136859 + gene protein_coding_gene FALSE TRUE AT1G69526.1|AT1G69526.2 UbiE/COQ5 methyltransferase family protein|methyltransferase similar to UbiE/COQ5 methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G69523.1); similar to Predicted methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL57665.1); similar to Os02g0744100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048100.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335)|similar to UbiE/COQ5 methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G69523.1); similar to COG0500: SAM-dependent methyltransferases [Nostoc punctiforme PCC 73102] (GB:ZP_00110216.1); similar to Os02g0744100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048100.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.835921719152448 -4.92319331377586 0.000469336764733027 1 5.4619284374124 6.63198079677889 -0.835921719152448 0.246095092475745
AT1G61810_at 1.81208348546341 1.90906027360602 3.96327143526086 3.75242123933589 2.83195397442915 2.73073356330697 2.56575748001743 2.67738256302963 2.01958292245726 1.94862457305726 1.45801637354614 1.64794858952839 1.86723496113357 1.71053247278789 2.04470341939398 1.4531236822348 2.30721452608388 1.94747703208821 2.13869627701356 0.207026904149693 0.197588157610212 0.205116147110174 0.208799212924108 0.201285002852372 0.204253838698558 0.202264498615321 0.200870279743707 0.200518964254803 0.210534767924175 0.204854601509065 0.197588157610212 0.206107727720198 0.201038278665053 0.211481881838271 0.197588157610212 0.209675299410975 0.202472880298849 0.202324233179622 1 1 + 22835604 22836396 22835960 22833682 22836627 + gene protein_coding_gene FALSE TRUE AT1G61810.1|AT1G61810.2 BGLU45; hydrolase, hydrolyzing O-glycosyl compounds similar to BGLU46, hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G61820.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE77795.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to BGLU46, hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G61820.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE77797.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.423710446905504 4.92252743662183 0.000469829540711251 1 5.461042584027 4.70041598827732 0.423710446905504 0.0478858338337654
AT2G06510_at 2.95859911545179 3.10024823951071 3.27272540866803 3.25486207976577 3.47412102236509 3.07893081994356 2.48450586886880 2.34749332237986 2.13955622440643 1.87341210866816 2.37741849499127 1.97427585379985 2.50935627077450 2.58724401634010 2.04365870271149 1.83178687597334 2.52388230795046 2.04780175358086 1.58293501264690 0.239521603767934 0.241096128097089 0.232459223722018 0.237080052475204 0.234476317988452 0.240766582418562 0.230644789165095 0.231121383344474 0.240259816288715 0.241461278025833 0.230644789165095 0.239024232172529 0.230644789165095 0.233546904568483 0.232880630276406 0.242115892464153 0.232203512748086 0.233938001123457 0.236738540849387 2 2 + 2587017 2587571 2587245.727 2585015 2587683 + gene protein_coding_gene FALSE TRUE AT2G06510.1|AT2G06510.2 replication protein, putative similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G45400.1); similar to Os02g0776800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048287.1); similar to replication protein A 70kDa [Oryza sativa (japonica cultivar-group)] (GB:BAB40712.1); similar to RPA 70kDa subunit [Pisum sativum] (GB:AAQ23194.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365)|similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G45400.1); similar to Os02g0776800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048287.1); similar to replication protein A 70kDa [Oryza sativa (japonica cultivar-group)] (GB:BAB40712.1); similar to RPA 70kDa subunit [Pisum sativum] (GB:AAQ23194.1); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Replication factor-A protein 1, N-terminal; (InterPro:IPR007199); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) 0.459537557703778 4.92208841772974 0.000470154731504353 1 5.46045848966316 5.04755030949707 0.459537557703778 0.076483761021405
AT2G47800_at 6.33366562918761 7.23987517048065 7.65894122520748 7.55189241268688 3.95056718452355 3.97160028747827 4.84836463242043 5.35438275500403 5.41114143990187 5.42752539918003 4.05781719188376 4.46094204239141 3.93477233063538 3.59235805646752 3.87107920154878 5.22764138224997 4.26982952876014 4.27895548332491 5.3363976571326 0.229042905816229 0.230943811570976 0.229906236655258 0.225091258401471 0.237321348144044 0.240380681172091 0.236578184948755 0.226279887643297 0.231857838916457 0.230062808980645 0.231992448869435 0.226280735604751 0.227465251552701 0.239366145904497 0.238428556325272 0.226121670776960 0.227159817177565 0.230265294301564 0.228038143780556 2 2 + 19586648 19587411 19587048.636 19581936 19587652 + gene protein_coding_gene FALSE TRUE AT2G47800.1 ATMRP4 (Arabidopsis thaliana multidrug resistance-associated protein 4) Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim. Identical to Multidrug resistance-associated protein 4 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 4) (ATP-energized glutathione S- conjugate pump 4) (MRP4) [Arabidopsis Thaliana] (GB:Q7DM58;GB:O24525); similar to ATMRP10 (Arabidopsis thaliana multidrug resistance-associated protein 10) [Arabidopsis thaliana] (TAIR:AT3G62700.1); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59595.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59596.1); similar to ABC transporter, transmembrane re (GB:ABE85045.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.670417766273117 -4.92144387702238 0.000470632587814311 1 5.45960089591549 10.6653424459049 -0.670417766273117 0.180605729920385
AT1G23740_at 10.7264511182789 11.0223445424613 11.1966727375945 11.1748546544602 10.9530086997811 10.8123393187762 12.2876299350641 12.4315777956954 11.8667579069508 12.2930597140086 11.8525601004142 11.7202794185193 11.9050476772949 11.8597767971214 11.6194926566608 12.1290213245724 11.6851791247336 11.6889662347888 12.1512826818099 0.0712052748177376 0.0694065335271486 0.0687798886150076 0.0698986832021812 0.0700551165391812 0.0739213129427069 0.0714008057876699 0.0681772914721723 0.0746929157237611 0.0688353000707726 0.0694590304204406 0.0681772914721723 0.0692048487530657 0.073333828672961 0.0681772914721723 0.0681772914721723 0.0794289037841318 0.0743138694407806 0.0687303082771182 1 1|0 -|/ 8398237 8398937 8398564.111 8398104 8399738 - gene protein_coding_gene FALSE TRUE AT1G23740.1 oxidoreductase, zinc-binding dehydrogenase family protein Identical to Quinone oxidoreductase-like protein At1g23740, chloroplast precursor (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9ZUC1;GB:Q945P3); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT4G13010.1); similar to Os08g0379400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061691.1); similar to quinone oxidoreductase-like protein [Helianthus annuus] (GB:AAK66565.1); contains InterPro domain Quinone oxidoreductase/zeta-crystallin; (InterPro:IPR002364); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.439470839690944 -4.91922189661953 0.000472283881625712 1 5.45664387322264 23.2812301091071 -0.439470839690944 0.0620438520663567
AT1G11860_at 11.3945944435636 11.6028558735224 10.9663332473321 10.8594718637631 11.2656758272026 10.724346157782 12.4327314544753 12.5662505261091 12.4254410343494 12.5908991670538 12.6420087949625 12.8703163765433 12.3408569630888 12.5537294535233 12.56551308526 12.6902728005463 11.9941124636370 12.4754534199310 12.4346433272619 0.0806842112758023 0.0754685491566843 0.0819811584844323 0.0789458813213632 0.078116937585537 0.0903978024939663 0.0828930958335506 0.0751758790272888 0.0801795223366036 0.0751758790272888 0.0780455168742429 0.0751758790272888 0.0751758790272888 0.08256738906104 0.0775527855090432 0.0760216582946995 0.0765693515189874 0.0764524806934147 0.0756298126886022 1 1 + 4002542 4003208 4002935.727 4001279 4003441 + gene protein_coding_gene FALSE TRUE AT1G11860.1|AT1G11860.2 aminomethyltransferase, putative Identical to Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT) (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60990.2); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:P93256); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:O49849); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:P49363); contains InterPro domain Glycine cleavage T protein (aminomethyl transferase); (InterPro:IPR006222); contains InterPro domain Glycine cleavage system T protein; (InterPro:IPR006223) -0.506139778466416 -4.91799884867146 0.000473195417502559 1 5.45501586029148 23.9766294721729 -0.506139778466416 0.104645474374407
AT4G14570_at 7.49044816363083 6.89979265573041 7.71066307310332 7.46222356735096 7.81070408078473 7.26581727698755 7.97759074469325 7.79006075774181 5.46173167593432 4.88304257129416 5.82416922998781 5.77884176230979 6.46161821388432 6.12813088297639 6.71608269229385 6.6701230746441 6.79980204008346 6.01201837321119 5.03771477538898 0.217087157421857 0.217032276550366 0.217015201700201 0.217015201700201 0.218111348203144 0.217015201700201 0.220063787081529 0.217975916429506 0.223391469401392 0.223245443448559 0.217015201700201 0.217015201700201 0.217015201700201 0.217015201700201 0.220482650440698 0.220455323858653 0.235347618395840 0.230821398839862 0.220664925180262 4 4|0 +|/ 8363681 8365091 8364641.333 8362582 8366649 + gene protein_coding_gene FALSE TRUE AT4G14570.1 acylaminoacyl-peptidase-related similar to serine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G36210.1); similar to Os10g0415600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064602.1); similar to prolyl oligopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47613.1); similar to prolyl oligopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47614.1); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.597115430954471 4.91787314032331 0.000473289213071141 1 5.45484851341855 13.2640848522760 0.597115430954471 0.149135095729821
AT1G66220_at 2.33724511156545 2.49721067279749 1.88630491066656 1.95877074632696 2.20513466604047 1.9431895126559 2.38432196646315 2.64116899656966 2.75145654344802 2.88517792148045 2.20331705174689 2.00925493650912 2.80662428966135 2.61324772195505 2.10177957777282 2.22126915985975 1.83207960746298 2.02253588337215 2.34422286563375 0.217500748824727 0.220699072732498 0.222723062189221 0.219409972858812 0.219261689724774 0.229588880135282 0.222594625685866 0.219584282459253 0.220432253346277 0.220479236202645 0.219276175608529 0.225820680199898 0.222847107985238 0.232206067424145 0.228026721387569 0.217568187389584 0.219918463612273 0.218245212756717 0.227832084498004 1 1 + 24676813 24677241 24677001.364 24674199 24677324 + gene protein_coding_gene FALSE TRUE AT1G66220.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G66210.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21650.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.450329488119011 -4.9172191931629 0.000473777463890209 1 5.45397791324775 4.674942975584 -0.450329488119011 0.0703858097697465
AT1G32200_at 8.75547476356934 9.15136145983529 7.85814624561267 7.53564743085283 8.42513308898188 8.01353569695658 9.55439102239278 9.29181478679144 9.00947391844053 9.67601640688005 9.59302036585727 9.90028084391543 9.52267872893433 9.31436127967427 9.88723815517444 9.59802295304235 9.14857368112097 9.46917616262191 9.5260910952339 0.16228393158826 0.158664086003347 0.173836115003996 0.172001372364100 0.165103766262224 0.171315174164123 0.158891665114799 0.168798875578468 0.177323006845479 0.160460531298029 0.160014512714829 0.157533928338620 0.157533928338620 0.164567814228013 0.157533928338620 0.158354340929011 0.168928484125365 0.167138828987066 0.158904225880135 1 1 - 11602209 11603237 11602665.091 11601761 11605040 - gene protein_coding_gene FALSE TRUE AT1G32200.1|AT1G32200.2 ATS1 (ACYLTRANSFERASE 1) Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol. Identical to Glycerol-3-phosphate acyltransferase, chloroplast precursor (EC 2.3.1.15) (GPAT) (ATS1) [Arabidopsis Thaliana] (GB:Q43307;GB:Q9FVR5); similar to glycerol-3-phosphate acyltransferase [Citrus unshiu] (GB:BAB79529.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.539918172385884 -4.91634905498532 0.00047442795301755 1 5.4528193799975 18.0522028092795 -0.539918172385884 0.122256776246933
AT3G44380_at 4.1439685526113 4.08409238491158 3.57346403243239 3.54290152157434 3.96825977324612 4.53062629689187 5.10410690784755 5.40858699295948 4.25304908833913 4.56115616964737 4.03723274024895 4.53187239107312 4.39103620437931 3.97510153288745 4.59495002333409 4.39003171939182 3.7952570474717 4.28248944842137 4.70111820577699 0.235157599135332 0.23783625127989 0.232568271648066 0.245845108512171 0.233058370503859 0.244410692143452 0.236272085288101 0.245488944852668 0.246117460814383 0.239489366692489 0.233980623506739 0.234655100892959 0.231607104383439 0.246424192262571 0.241429634550733 0.232630158427304 0.252497678002049 0.253785807774476 0.242000712920372 3 3 - 16047289 16047737 16047552 16047170 16047867 - gene protein_coding_gene FALSE TRUE AT3G44380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01080.1); similar to Os12g0119800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066015.1); similar to Os08g0558300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062493.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.518368618199909 -4.91611178423607 0.000474605493219903 1 5.45250344583878 8.67192791263706 -0.518368618199909 0.111278784832618
AT1G21750_at 10.7277682271066 10.7260018021746 10.9382017670346 10.9640296014526 10.2468413494877 10.1095087737961 9.40423042422392 9.14831899573223 8.45338204230832 8.18584366502002 8.5404688592822 8.67146978014258 8.61682368304217 8.451967881537 8.79184618133335 8.28740790076202 8.46574011932802 8.43435195083377 8.09277831247613 0.164282177376613 0.164839121494651 0.168326209234234 0.164282177376613 0.166800116141096 0.169454034370327 0.167517261005653 0.164282177376613 0.167523518092830 0.175507970014967 0.170560307025657 0.166417603269815 0.174133691950048 0.169537931236940 0.164282177376613 0.169021178904735 0.176385373273016 0.171730710561478 0.176553779724691 1 0|1 /|+ 7647808 7648167 7648004.222 7645689 7648830 + gene protein_coding_gene FALSE TRUE AT1G21750.1|AT1G21750.2 ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 Identical to Probable protein disulfide-isomerase 1 precursor (EC 5.3.4.1) (PDI 1) [Arabidopsis Thaliana] (GB:Q9XI01); similar to ATPDIL1-2 (PDI-LIKE 1-2), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G77510.1); similar to Protein disulfide-isomerase precursor (PDI) (GB:Q9XF61); similar to Protein disulfide-isomerase precursor (PDI) (GB:P29828); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792)|Identical to Probable protein disulfide-isomerase 1 precursor (EC 5.3.4.1) (PDI 1) [Arabidopsis Thaliana] (GB:Q9XI01); similar to ATPDIL1-2 (PDI-LIKE 1-2), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G77510.1); similar to Protein disulfide-isomerase precursor (PDI) (GB:Q9XF61); similar to Protein disulfide-isomerase precursor (PDI) (GB:P29828); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792) 0.425786857615609 4.9158740747933 0.000474783432088465 1 5.45218691750979 18.6713680598598 0.425786857615609 0.0504599306784657
AT4G31210_at 4.68621755658564 4.73989513196658 4.17077600240749 4.50235910102891 3.56477144170148 3.39293505814801 5.64241734378329 4.39717772226745 3.83833610269794 3.82142559012251 3.08302314751582 3.09505823872906 3.11882441657379 2.71757404605756 3.66900246097269 3.55145112730061 3.90188407669753 3.48162565724946 4.1284850098659 0.210536582198754 0.215365592839729 0.214070745061834 0.205208181155318 0.210281130152774 0.202660128655471 0.207731812014891 0.218453252714307 0.205729368223908 0.20588269579938 0.209358992727750 0.202595892871723 0.204341552247531 0.209255811427035 0.20748841325488 0.204898626126019 0.211393915333377 0.208696468476800 0.210831587009434 4 4|0 +|/ 15170902 15172466 15171970 15165286 15172693 + gene protein_coding_gene FALSE TRUE AT4G31210.1 DNA topoisomerase family protein similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to DNA topoisomerase I [Magnetospirillum magneticum AMB-1] (GB:YP_420045.1); similar to COG0550: Topoisomerase IA [Magnetospirillum magnetotacticum MS-1] (GB:ZP_00056434.2); similar to DNA topoisomerase I [Fulvimarina pela (GB:ZP_01440083.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain DNA topoisomerase, type IA, zn finger; (InterPro:IPR013498); contains InterPro domain DNA topoisomerase, type IA, central; (InterPro:IPR013497); contains InterPro domain TOPRIM; (InterPro:IPR006171); contains InterPro domain DNA topoisomerase, type IA, domain 2; (InterPro:IPR003601); contains InterPro domain DNA topoisomerase I, bacterial-type; (InterPro:IPR005733); contains InterPro domain DNA topoisomerase, type IA; (InterPro:IPR000380); contains InterPro domain Toprim subdomain; (InterPro:IPR006154) -0.78041335450216 -4.91572275220583 0.00047489674226853 1 5.45198541466292 8.0154291517107 -0.78041335450216 0.225169195918601
AT2G28840_at 10.4030131250239 10.4871657484738 10.3855023612725 10.3358738242854 11.0556420536506 10.3804096915108 9.822264831279 9.3860001214198 9.55889567701417 9.59101004611807 10.3135989332138 10.1832463142993 10.1024280658274 10.1542769625402 9.88098439089903 9.8939441040063 10.0108028222351 10.1392681545026 9.18913339960718 0.110992857830927 0.112579547703341 0.113986005991196 0.110081224978699 0.114702341086554 0.120513122645874 0.108881198537658 0.108602612745986 0.124442662535519 0.110068646552444 0.112795084616460 0.108111007463262 0.112080780882013 0.112480054493751 0.112095364129141 0.108307498967028 0.115460202270831 0.117107586197586 0.114771388105077 2 2 + 12386907 12387496 12387216.636 12385414 12387819 + gene protein_coding_gene FALSE TRUE AT2G28840.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07270.1); similar to ring zinc finger protein [Artemisia desertorum] (GB:AAY17949.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.576609185162337 4.91091658251962 0.000478510505339184 1 5.44558334815521 20.0475665159579 0.576609185162337 0.140143326932676
AT3G17152_at 2.66235398228897 2.75241797319163 2.72054279611273 3.03025899549532 2.30028371616372 2.13984007485844 2.9105687882386 2.98654079100397 2.80565008694232 2.73590126651432 2.55481579685827 1.76896536219424 2.16349328072419 2.73500358871774 1.79637844864431 2.70634628773625 1.88213952566113 2.78510548557526 3.15977170291888 0.315155652022833 0.315155652022833 0.347057089163426 0.325232181037577 0.322868666897511 0.330317725510697 0.327174620809829 0.315155652022833 0.315155652022833 0.315155652022833 0.315155652022833 0.332122403016351 0.334633099961195 0.315155652022833 0.320530329618198 0.315155652022833 0.322079360972302 0.326435810453979 0.330740326905624 3 3 + 5849293 5849510 5849441.4 5848793 5849620 + gene protein_coding_gene FALSE TRUE AT3G17152.1 enzyme inhibitor/ pectinesterase similar to pectinesterase inhibitor [Arabidopsis thaliana] (TAIR:AT3G17150.1); similar to pectinmethylesterase inhibitor [Actinidia deliciosa] (GB:BAC54964.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.440824517400577 -4.91068364193067 0.000478686390262341 1 5.44527295495284 5.28758688507206 -0.440824517400577 0.0637136307481143
AT2G20560_at 3.28037354951168 3.4988591828292 3.97054638922741 4.09068848099241 3.34484496960798 3.60599737928514 3.03627883523490 2.80148422560221 2.77910773323182 2.53833090232126 2.68422681917676 2.43456460246974 2.85580760692394 2.72192415019973 2.93579344746495 3.08293919518065 3.5423284296084 3.10169456406049 2.50533524671744 0.214619279462111 0.223708058614887 0.22203752286303 0.222779026906203 0.21833235054596 0.225440798116554 0.214619279462111 0.218111765578691 0.217166123836741 0.219616214733899 0.216653054935316 0.22326615852421 0.214619279462111 0.217787977875636 0.219344961736909 0.214619279462111 0.219924693689386 0.223331485331196 0.214619279462111 2 2 - 8855541 8856176 8855796.364 8855211 8857091 - gene protein_coding_gene FALSE TRUE AT2G20560.1 DNAJ heat shock family protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G28480.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE89016.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.455544457139575 4.90989964341704 0.000479278860955057 1 5.44422820655065 6.21738469952424 0.455544457139575 0.074533979521729
AT1G07450_at 0.81739366260825 0.973962422491906 0.623722004703003 0.709956151280022 1.10464556642997 0.996032067794144 3.209776864786 2.86804864009051 2.18330730575599 2.16678911385265 1.65249227192410 1.68871232791698 1.74602093127521 2.58829059283065 1.96390694619391 3.07072266516189 1.73749830466524 2.47956100093619 1.36037274457617 0.239131248721713 0.238217025095691 0.243333173216837 0.242642181419433 0.254606235627492 0.245632453118328 0.239406072898419 0.239433348604832 0.250644417711184 0.239281814797321 0.238240413684343 0.237909681048857 0.238256451629456 0.240782490651387 0.237909681048857 0.240460997780552 0.243925376872409 0.243921454779524 0.23954488467527 1 1|0 -|/ 2288124 2288896 2288475.2 2287923 2289333 - gene protein_coding_gene FALSE TRUE AT1G07450.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29330.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.44814777061215 -4.90921194327871 0.000479799196575507 1 5.44331169447114 3.42263734827696 -0.44814777061215 0.0693353777024519
AT1G77680_at 5.37634256932787 5.68343102971888 5.71590248637172 5.99038287346634 6.31428279386437 5.84606317661726 5.85926999639443 6.18036050283434 4.7896240156887 4.95546082490575 5.80708736634109 5.81759356074592 5.22608984833913 5.53860611052313 5.69532615755936 5.58531068727374 5.36199241308989 5.75514095165280 4.40310245800514 0.235659856484776 0.226263812134380 0.226263812134380 0.227052308300497 0.239174902608642 0.233652332846599 0.227183470525288 0.228944216977606 0.247789881399141 0.235896646188240 0.226418517853433 0.226263812134380 0.236529620436625 0.245354951045510 0.230226612939931 0.228094237010085 0.243326700738506 0.232708017479668 0.228609317510059 1 1 - 29197742 29198193 29197916.545 29196728 29201181 - gene protein_coding_gene FALSE TRUE AT1G77680.1 ribonuclease II family protein similar to ribonuclease II family protein [Arabidopsis thaliana] (TAIR:AT2G17510.1); similar to Os02g0754100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048152.1); similar to PREDICTED: similar to CG16940-PA, isoform A [Rattus norve (GB:XP_346070.2); contains InterPro domain Calycin-like; (InterPro:IPR011038); contains InterPro domain Ribonuclease II and R; (InterPro:IPR001900) 0.537068881042574 4.90637158543156 0.000481954633607925 1 5.43952540121261 11.0279823384780 0.537068881042574 0.121381721622550
AT1G31130_at 9.49975635144118 9.90009147112377 10.0223018764681 10.2195987830792 10.0753510996590 9.66379407956464 9.45482694486706 9.3264727815031 8.5467526593055 8.5319374021018 8.89146788123973 8.93448032802395 9.33917121716747 9.37635638088546 8.5419395623092 9.41828264744673 9.28413272220822 8.70785945950708 8.39657968305028 0.166810540153482 0.166125478646303 0.172030738671931 0.159575498262624 0.166746154523468 0.167847747807528 0.167435147270251 0.170282598894549 0.164975477333200 0.169951127135879 0.169989771393688 0.164220306124793 0.168810643942950 0.173714471153665 0.181456076189626 0.159575498262624 0.175931815672433 0.172304606523797 0.166947520512428 1 1 - 11115009 11115495 11115299.636 11114682 11116176 - gene protein_coding_gene FALSE TRUE AT1G31130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44860.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90086.1); contains domain gb def: Hypothetical protein AT4g16850 (PTHR22597:SF10); contains domain FAMILY NOT NAMED (PTHR22597) 0.50996463291079 4.90596999189019 0.00048226021195719 1 5.43898994778167 18.5470081016304 0.50996463291079 0.107384323284250
AT3G12090_at 3.75265462019565 3.90603435673282 3.29629260084812 3.55126905983338 3.80838446909265 3.03030818610483 4.48080996681085 4.80770961061852 4.27563039084015 3.80078540164224 3.74076432052976 3.78674348857438 3.63892145609051 3.52810158458625 3.45899004901107 3.91207454085914 3.60200014729017 3.27153991224966 3.97964611379425 0.232018895327598 0.230146408061168 0.240139354270797 0.23111419419346 0.229086071112938 0.231220638261523 0.232975621175141 0.22825201054292 0.239975732782613 0.228524560666844 0.229925095965572 0.231253991745009 0.229734456991940 0.23870088034928 0.234665249309675 0.236452734883381 0.241875246397551 0.241162950256283 0.230941926501466 3 3|0 -|/ 3852551 3853438 3852776.889 3852151 3853726 - gene protein_coding_gene FALSE TRUE AT3G12090.1 TET6 (TETRASPANIN6) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to putative senescence-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90676.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) -0.60826696215653 -4.9043821705364 0.000483470414650704 1 5.43687259041136 7.64722247852514 -0.60826696215653 0.154862597037460
AT2G33620_at 5.57340355807905 5.85286704004768 6.32417821336946 6.41810209650774 7.031444030879 6.39633337471233 6.46620042061947 6.69737019293911 5.85111545539827 5.95399713118305 6.67542334212647 6.5646846484496 6.70798483446783 6.88198367773347 6.90404784518052 6.39766122471645 6.6132603482806 6.62489690352446 6.09707277398303 0.199693381321094 0.193315880536948 0.194402188425935 0.189320373541061 0.202057692357412 0.200559372393151 0.188765457740193 0.193786199605770 0.215428306231329 0.188765457740193 0.191230852565955 0.188765457740193 0.189309174526611 0.201867540490758 0.201479081805038 0.189664509608914 0.206086944713939 0.210137969485039 0.191906309232200 2 2 + 14242606 14243573 14243146.818 14241283 14243959 + gene protein_coding_gene FALSE TRUE AT2G33620.1|AT2G33620.2|AT2G33620.3 DNA-binding family protein / AT-hook protein 1 (AHP1) similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT4G17950.1); similar to putative AT-hook DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10062.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.549450929408807 4.90423900096176 0.000483579692974560 1 5.43668165199396 12.6643063525182 0.549450929408807 0.127606728634847
AT4G36930_at 0.417873041349107 0.558402914664984 0.726923812060177 0.670436334679844 1.13997908669491 1.21186514004824 0.135047830149693 0.1524477903568 0.162824514281486 0.336484109982826 0.681030180295572 0.273500980211389 0.384256756182218 0.371173960860178 0.648094754049732 0.81884501148945 0.709537892460657 0.51493179402806 0.574799558987379 0.208911366042280 0.208911366042280 0.209796651236281 0.2155808070744 0.210098580841780 0.216694423320906 0.208911366042280 0.209428561237754 0.225356178879936 0.213829791867637 0.215387287506984 0.208911366042280 0.208911366042280 0.21136820478272 0.219175496433426 0.209683834755975 0.213371800980028 0.218437993867768 0.213886901549371 4 4|0 +|/ 17414953 17415612 17415429.2 17414124 17416291 + gene protein_coding_gene FALSE TRUE AT4G36930.1 SPT (SPATULA); DNA binding / transcription factor Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy. Identical to Protein SPATULA (SPT) [Arabidopsis Thaliana] (GB:Q9FUA4;GB:O23192); similar to ALC (ALCATRAZ), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G67110.1); similar to basic helix-loop-helix protein [Fragaria x ananassa] (GB:AAV33474.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.406746777176953 4.90417327177364 0.000483629871422153 1 5.43659399089877 1.08072573239100 0.406746777176953 0.0291687440756149
AT1G18390_at 6.48379702874643 6.68258326116033 6.77347025523362 6.69239223926654 6.35936036612227 6.12878494461789 3.90424523110457 3.88738185912743 4.99715343681588 4.33220033790584 4.17331613312215 4.41754080603532 4.0891331737933 4.52472520108512 3.81916165720079 3.67741782474546 4.77802436938097 4.17085934134763 4.4613933260748 0.251777307177128 0.248616390852611 0.245802916920843 0.244891190260034 0.243276690485698 0.255685878361271 0.243276690485698 0.246794072386257 0.247653065767068 0.254497854883007 0.243276690485698 0.247448573365212 0.246488692460865 0.246043209334538 0.249693699682296 0.2445904957811 0.253389467806511 0.250667964835742 0.243276690485698 1 1 + 6329282 6329868 6329581.818 6327456 6329928 + gene protein_coding_gene FALSE TRUE AT1G18390.1 protein kinase family protein similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66880.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041957.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.429178359674364 4.90307641920998 0.000484468034202495 1 5.43513103750002 10.2655959049746 0.429178359674364 0.0545984061325043
AT3G04090_at 10.2147547011818 10.4187658168954 10.9156660521915 10.7639929083862 10.8916204608335 10.7397539923167 10.150725265537 10.2275592925856 9.94242346898237 9.55904861639785 9.92349532540831 9.6190249063097 10.2342506688363 10.3371385754816 9.608101175651 9.9519842935819 9.72471642102923 10.1105658644797 9.4748987863599 0.111508204229515 0.109307277614983 0.115857267633884 0.112525278713868 0.112879494663861 0.116363665386893 0.108661798433736 0.111216801871415 0.115160898524413 0.112639038739104 0.111737313616752 0.11225185948534 0.110852051455932 0.107819996887029 0.109380752530826 0.11382226307912 0.127408010032973 0.111711079154154 0.111740481706799 3 3|0 -|/ 1072397 1073865 1073030 1072099 1074136 - gene protein_coding_gene FALSE TRUE AT3G04090.1 SIP1;1 (SMALL AND BASIC INTRINSIC PROTEIN 1A) Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER. Identical to Probable aquaporin SIP1.1 (Small basic intrinsic protein 1.1) (SIP1.1) [Arabidopsis Thaliana] (GB:Q9M8W5); similar to SIP1,2 (SMALL AND BASIC INTRINSIC PROTEIN1B) [Arabidopsis thaliana] (TAIR:AT5G18290.1); similar to small basic intrinsic protein 1 [Vitis vinifera] (GB:ABD46741.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.427338223824602 4.90304675056812 0.000484490726881851 1 5.43509146327026 20.3390797834546 0.427338223824602 0.0529423318676331
AT1G19380_at 4.71544217779623 4.77201688921358 3.30786173313137 3.48995604516609 4.54379184564256 4.21736404142902 3.26451806706658 2.76990268654029 6.29786180056126 4.49841352148522 7.46964101054393 7.41961647590585 4.4450687191308 7.66681062831122 5.98458934605047 5.8792948735449 4.00333270710267 5.90115575125888 4.45885580988317 0.298915594809754 0.288981589573415 0.307665539979187 0.292739860748943 0.282760610439894 0.303341797643472 0.289746338321092 0.296789889865562 0.301250518964409 0.282760610439894 0.304284708614951 0.302183061077264 0.29178102694483 0.301121297208144 0.289893751974100 0.282760610439894 0.29431978889683 0.298904981107667 0.283781364011778 1 1 + 6698132 6698613 6698358.455 6698049 6698815 + gene protein_coding_gene FALSE TRUE AT1G19380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65650.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69762.1); contains InterPro domain Protein of unknown function DUF1195; (InterPro:IPR010608) 0.510209219762983 4.90205806705934 0.000485247584771826 1 5.43377259466186 9.47572288556037 0.510209219762983 0.107733793835612
AT2G39130_at 2.92478494985869 3.03130399491903 2.68078949918399 3.05047337335814 3.11608495034475 3.63126537735824 2.98264715881433 3.43311860378417 2.38097271157758 2.35521317553854 2.97233228687502 3.3137400177241 4.21473556906564 3.21694473863246 4.21526092390413 3.28451456959188 4.02679799910676 2.80834502854750 2.4653636734313 0.208896797641572 0.201711315480858 0.205380751273058 0.200183511130738 0.200969353910271 0.202322871878434 0.205513264183061 0.208252868689306 0.208575488794342 0.203661440077858 0.203836344848092 0.203435729946210 0.200183511130738 0.202631237062795 0.203107047893994 0.203903451000377 0.200183511130738 0.208018795521778 0.212499266188474 2 2|0 -|/ 16331276 16332600 16331875.8 16330034 16334344 - gene protein_coding_gene FALSE TRUE AT2G39130.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G54830.1); similar to Os02g0101000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045585.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE87832.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.566378497357846 4.9016353872083 0.000485571536152858 1 5.43320870182385 6.05985869438437 0.566378497357846 0.135861453751145
AT2G21620_at 10.4107101798611 10.2782965963205 10.4299644039588 10.3023793097934 10.4703810634586 10.1632274983293 9.54731619622567 9.73293875634742 8.99375773776646 9.18374432852138 9.63247736116553 9.37091429137007 9.70420853914083 9.59903854647087 9.44481279227889 9.69009273500143 9.66201352370485 9.9177735912345 9.06463446949949 0.103807574187436 0.104831423705799 0.106322438069171 0.103896464028228 0.105247898395547 0.110014015861604 0.104470403157698 0.103970581593532 0.111994967441890 0.105690879992217 0.102125426090938 0.101831364642779 0.103631565896744 0.105462920409020 0.110862435446001 0.105200176989351 0.106917374849341 0.104840658468939 0.107175390617553 2 2|0 +|/ 9255879 9257024 9256318.5 9255653 9257336 + gene protein_coding_gene FALSE TRUE AT2G21620.1|AT2G21620.2 RD2 (RESPONSIVE TO DESSICATION 2) Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G11930.1); similar to putative universal stress protein [Cicer arietinum] (GB:CAG14983.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.448063440323226 4.90154159415059 0.000485643452244892 1 5.43308356917064 19.5210910511077 0.448063440323226 0.0697842498927169
AT1G41830_at 8.27805982372648 8.68092018138914 7.31101140297957 7.77408061779958 7.80391089849833 7.03893143604676 10.1545404618510 10.1648163320629 9.06597404270566 9.50619563791948 10.1831594767275 10.3180509627551 9.6199350763785 9.92040948573082 10.1494040741309 9.55360410270644 9.18823404570014 9.97581896237665 9.35762917013641 0.173611721358157 0.164002860332537 0.190444007682422 0.178488611846756 0.17215534445129 0.215110050335185 0.164212093121542 0.161144706901284 0.191369358070583 0.160401059717483 0.162371685652748 0.163710246975594 0.167242086239103 0.162994383264826 0.165485955813336 0.162555226714582 0.183700145560066 0.173709519298953 0.169267125871395 1 1|0 -|/ 15606347 15607068 15606699.5 15606058 15610407 - gene protein_coding_gene FALSE TRUE AT1G41830.1 SKS6 (SKU5 Similar 6); pectinesterase similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS5 (SKU5 Similar 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G76160.1); similar to SKS7 (SKU5 Similar 7), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21860.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.641978268933451 -4.90114189311282 0.000485950050339765 1 5.43255029629363 17.9875388810778 -0.641978268933451 0.169737316008468
AT3G13000_at 4.23935020264973 4.16814529482649 2.85793521658668 2.98943990779785 3.85153193020745 4.25474208746941 5.26634065440771 4.77011299965795 6.33349481605056 5.55342944052784 7.41904648062964 6.81603211731771 5.89115528238813 6.88150850089487 6.31285187321527 6.30852640277984 4.6602009833224 5.93710680189949 6.70789095902157 0.245130530684044 0.248005087337477 0.254148203220199 0.273835857053980 0.249326865129879 0.249181072656697 0.242951575368110 0.246058543950330 0.245988765054999 0.250680660349051 0.25423196983747 0.24285683465271 0.249481910911762 0.248188429119739 0.251190488384066 0.248244603100978 0.251103076633873 0.250007497523184 0.251091758316128 3 0|3 /|- 4158283 4158878 4158579.75 4157974 4162072 - gene protein_coding_gene FALSE TRUE AT3G13000.1|AT3G13000.2 transcription factor| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16750.1); similar to Os06g0704100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058505.1); similar to Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE81403.1); similar to Os06g0692800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058429.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.521271592798763 -4.9008810926423 0.000486150212432738 1 5.43220232639547 10.2879874336200 -0.521271592798763 0.113635648773476
AT3G61590_at 3.60584811068362 4.54779665805995 2.20241766223574 2.90274680993064 3.44739155150222 2.94348023451227 4.48600619284741 4.43438585508925 3.87138367173743 3.83318457082624 4.35833164597247 4.98199983218223 4.42503313701206 4.35531502888052 3.73393982398889 3.41736483163232 3.5406289989194 3.32789728281375 4.77198288958234 0.210627030542102 0.20335535365077 0.206824919179490 0.204573948536667 0.20335535365077 0.218095142582933 0.20335535365077 0.209324973052479 0.210465361071975 0.203537947545981 0.20335535365077 0.207177352466892 0.215279876276523 0.209858751657552 0.210097796943872 0.204622252906634 0.214152602158195 0.206724653703747 0.206448836130779 3 3 + 22804660 22805098 22804877.091 22802937 22805305 + gene protein_coding_gene FALSE TRUE AT3G61590.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G15710.1); similar to F-box-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD20077.1); similar to Os02g0260200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046481.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.767893347165818 -4.90004240774657 0.000486794486516157 1 5.43108323928200 7.65946623438624 -0.767893347165818 0.221233941509256
AT1G27450_at 10.2032140934055 10.2652894274855 10.3743281142547 10.3385484729020 10.0133919271310 9.90242597709253 9.46495943087646 9.74174474174171 8.82661648347113 9.13694397235335 9.520677481073 9.88352826286815 9.38636255748094 9.58933790317771 9.91228937338479 9.3584098118211 9.24610381839757 9.64765854925764 8.89248777722902 0.124325710137371 0.124360995043558 0.127256744556562 0.127986949163308 0.125852909005121 0.124755891663504 0.124839540806757 0.122128227667376 0.136731941073611 0.137320497383895 0.125745247824931 0.122417881769970 0.125120760700977 0.124050655336091 0.127926369850068 0.128382216039182 0.138847293720545 0.125506872331593 0.138822260926865 1 1|0 +|/ 9532436 9533754 9532939.778 9531826 9534101 + gene protein_coding_gene FALSE TRUE AT1G27450.1|AT1G27450.2 APT1 (ADENINE PHOSPHORIBOSYLTRANSFERASE 1); adenine phosphoribosyltransferase|APT1 (ADENINE PHOSPHORIBOSYLTRANSFERASE 1) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. Identical to Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT 1) (APT1) [Arabidopsis Thaliana] (GB:P31166;GB:Q8LGF6;GB:Q9FZJ0); similar to APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G22570.1); similar to adenine phosphoribosyltransferase [Brassica napus] (GB:AAP85303.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) 0.427200795732932 4.89981958182074 0.000486965812063029 1 5.43078589372066 19.2980187967947 0.427200795732932 0.0530736620198214
AT1G61730_at 7.33988410192495 7.45612708158997 7.3991796808825 7.25146666179283 7.50318932829993 7.44600579661772 6.77731240659347 7.01070301591747 6.55103394328414 6.37439344698008 7.2942104814071 7.25883141210461 7.19308196273624 6.85497237313627 7.1602057808357 6.876353137407 6.99792493867938 6.66854475207884 6.38972207415554 0.115743256141208 0.111534306140652 0.119396712048490 0.115892858448597 0.113736860119663 0.120442899232571 0.11312313412882 0.112215281966184 0.1246763280235 0.116296317184049 0.114380177420708 0.109461913049152 0.109461913049152 0.122393094413993 0.118566586323558 0.110987707054190 0.111691376015964 0.117547714708595 0.125032368955255 1 1 - 22797132 22797685 22797347 22796884 22798368 - gene protein_coding_gene FALSE TRUE AT1G61730.1 DNA-binding storekeeper protein-related similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G00390.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.426793082691671 4.89863638777951 0.000487876609707008 1 5.42920685664139 14.0111828890047 0.426793082691671 0.0527952027931896
AT3G22850_at 6.93144947321712 7.0132301909418 7.15673543192325 6.9320582371599 6.62691679307992 6.83529613102341 6.10883932636425 6.5143067775734 5.36921756443569 6.02166364499654 6.37853882153378 6.20278487282164 5.82761079518521 6.30814289594002 6.21697470001109 6.14480300421732 6.44470988202546 6.95696544350396 5.4179682811206 0.197705991442679 0.189555538001523 0.184125209870247 0.182998983739018 0.184772344911032 0.190499358160263 0.191658717136723 0.197583221934814 0.201834690566475 0.191508993623603 0.19589480416056 0.186831235501425 0.198121124694773 0.187599795043605 0.188797723146725 0.183135188567061 0.19251995152267 0.186657616449771 0.190548007677243 3 3|0 +|/ 8089230 8090235 8089718.875 8089010 8090477 + gene protein_coding_gene FALSE TRUE AT3G22850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced protein-like protein [Thellun (GB:AAM19711.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) 0.476455838996508 4.89259898219558 0.000492552182412672 1 5.42114574048743 12.7213621112049 0.476455838996508 0.089084286754323
AT3G16000_at 10.4529634482295 10.5599895610097 9.70405878084095 9.86329030147776 9.93165496401335 10.0336326672744 10.6260609130964 10.5722259405992 11.1710881370599 10.9004771681092 10.8703578805639 11.2347512161654 10.4278528275951 10.7384200490688 11.1072486984985 10.7045257896398 10.4767949668821 10.8292889745970 10.7890078523360 0.0661704208668949 0.064707343984872 0.0712883462882796 0.0686211471340008 0.0658042853698726 0.0666930801979292 0.0670686682031658 0.0652751737100948 0.0720253096007679 0.0644747147645201 0.0651296035661771 0.0650675572311951 0.067062888435069 0.0711975785759036 0.065922204408979 0.0649558591969449 0.0660963806310822 0.0650377190738443 0.0642984490285702 3 3 - 5431089 5431607 5431294.091 5430895 5433823 - gene protein_coding_gene FALSE TRUE AT3G16000.1 MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes. Identical to MAR-binding filament-like protein 1 (MFP1) [Arabidopsis Thaliana] (GB:Q9LW85;GB:Q7Y1Z5); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03080.1); similar to MAR-binding filament-like protein 1-1 (GB:Q9M7J4); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain t-snare; (InterPro:IPR010989) -0.412260061395396 -4.88652989703824 0.000497300028596875 1 5.41303580789083 21.0940742901733 -0.412260061395396 0.0387375519449520
AT1G56145_at 3.51720793479379 3.23969649682435 3.15793887476153 3.05059518039417 3.32171524648262 3.54606918248605 1.77880383901293 1.31762321052278 2.24614380165021 2.47442939919830 2.4434929933533 2.02672244432476 2.88382100446915 2.0820460671145 2.62732969953414 2.44068521402052 2.51276371060246 2.79956574495154 2.13466323084139 0.218064745719327 0.211673692999386 0.209082557299601 0.21069303660394 0.218827677305648 0.215383746356968 0.213517056485415 0.226849219590855 0.216978231133639 0.209216919543952 0.213448651820878 0.209082557299601 0.217600610544607 0.219432668380969 0.220506217045409 0.21682401995467 0.223897841684657 0.209546228412405 0.209082557299601 1 1|0 -|/ 21011911 21012610 21012224 21011758 21017648 - gene protein_coding_gene FALSE TRUE AT1G56145.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56130.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56120.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56140.1); similar to putative Receptor-like serine/threonine kinase(RFK1) [Oryza sativa (japonica cultivar-group)] (GB:BAD03117.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to OSJNBa0093O08.1 [Oryza sativa (japonica cultivar-group)] (GB:CAD41882.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.498860649987813 4.88318479784765 0.000499937546131532 1 5.40856306188406 5.24727233083958 0.498860649987813 0.102608067619833
AT4G28240_at 10.8660797815143 11.0111839975567 11.3819806659946 11.4376543947296 12.0362283792523 11.9799240718381 10.8582029914314 11.0492495047754 11.2500379465965 10.9045284133891 11.4833204327277 10.9503188237746 11.7019392681038 11.1809174081189 10.7898351537767 11.3816377524982 11.3744774221795 10.8911275186243 11.2941562160103 0.0846619506602666 0.0831014428817223 0.0870305486693752 0.0840083521964521 0.0830217187335805 0.0913226862214924 0.0819487851899646 0.0866182074542578 0.0860639038834754 0.0858861206528562 0.0808433503915412 0.0824527508015358 0.0808433503915412 0.0864400191566463 0.0834763445645385 0.0811060649593176 0.0922530576147502 0.0853976951567187 0.0819026432679671 4 4 - 13997985 13998201 13998092.909 13997298 13998353 - gene protein_coding_gene FALSE TRUE AT4G28240.1 wound-responsive protein-related 0.416195169805515 4.88165983846801 0.000501144834173046 1 5.4065233740326 22.5119484306236 0.416195169805515 0.0437194251230402
AT2G34480_at 10.8213391596283 11.0247441284066 10.1482896438541 10.4112617437815 10.2607715031516 10.1799006055102 10.7419818512575 11.1613271386742 10.7305089059309 10.6439145435838 10.5775689848558 10.6801852308878 10.4445533417570 10.3459821887534 10.9538659284459 10.2115263312786 9.8299106576138 10.0860932128209 10.635331476617 0.0827598049085148 0.079814499035717 0.0833268782141208 0.0805852101668304 0.081326355680323 0.0842451881138509 0.0821303540408692 0.0788539484016166 0.091265788142324 0.0794248536878872 0.078670956156724 0.0796004155058824 0.078670956156724 0.087594872886875 0.0808981053864297 0.081278786687795 0.090801860143399 0.0861119430699098 0.078670956156724 2 0|2 /|- 14540057 14541079 14540475.4 14539787 14541318 - gene protein_coding_gene FALSE TRUE AT2G34480.1 60S ribosomal protein L18A (RPL18aB) Identical to 60S ribosomal protein L18a-2 (RPL18AB) [Arabidopsis Thaliana] (GB:P51418;GB:O64699); similar to 60S ribosomal protein L18A (RPL18aC) [Arabidopsis thaliana] (TAIR:AT3G14600.1); similar to unknown [Solanum tuberosum] (GB:ABA46783.1); contains InterPro domain Ribosomal L18ae protein; (InterPro:IPR002670) -0.482999884788091 -4.88130980084042 0.000501422388197335 1 5.40605512798306 21.1242664934141 -0.482999884788091 0.0936605476925269
AT3G48210_at 2.15873119876398 2.23730007590971 2.55580921250225 2.13882196299869 2.84129282132045 2.90328072500424 1.98601692521488 1.93577316731617 1.23627364733789 1.61172708211349 1.99659851494221 2.01894579863134 1.67328181109606 1.26251885697397 2.28043730497786 1.67482516720899 1.94326472291480 2.53478971229626 1.79452826977392 0.199868929989979 0.185389234219982 0.188404879530217 0.193375272335674 0.189389293189322 0.197326645165005 0.186471834315389 0.187282551640029 0.190363499448193 0.190010914168723 0.186068429067371 0.186109027519766 0.187960202236055 0.190804140214995 0.186805730415459 0.185389234219982 0.199576372199584 0.192051481062355 0.189705473168149 3 3|0 +|/ 17861105 17862085 17861690.9 17860344 17862664 + gene protein_coding_gene FALSE TRUE AT3G48210.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44202.1); similar to Os05g0110700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054442.1); contains InterPro domain Kinetochore-Ndc80 subunit Spc25; (InterPro:IPR013255) 0.45295945418849 4.87917124169284 0.000503121638246057 1 5.40319390139343 4.0799244623981 0.45295945418849 0.074718416828459
AT4G22160_at 3.80866632252925 4.0181720145985 3.35665036496178 2.84773931277702 3.46565313726098 3.39165551940328 3.98993478447112 3.57711324324157 4.31357605601257 4.41513930432102 4.37983059177955 4.36521251225766 3.70075014494305 4.54449416550808 4.07049227576994 4.23928345244919 3.47773435161828 4.14302839243505 5.05205342385916 0.214597082880988 0.211626009580414 0.21837978867841 0.231761845092163 0.206131645541463 0.216781046894802 0.215745650192887 0.210069397511646 0.221092412376329 0.213986971471406 0.209594551650557 0.206409613444335 0.210292630098241 0.209269581100528 0.213426715926216 0.208939197070141 0.209894566933272 0.228392468096648 0.217605350395610 4 4|0 +|/ 11733227 11733846 11733413.8 11733135 11734039 + gene protein_coding_gene FALSE TRUE AT4G22160.1|AT4G22160.2 unknown protein -0.530766683247580 -4.87845123792696 0.000503695104570434 1 5.40223040970784 7.91129450269344 -0.530766683247580 0.119743369396775
AT1G79520_at 6.38235642519498 6.61158469342304 8.61842718089875 8.87227249285962 8.38066469866225 7.8820173286142 9.16545523951693 8.9129048796732 5.57839583125505 7.2324336368662 6.11471503280914 6.09115605846233 7.54888018918839 6.83196703266801 6.01957378088523 7.62158388196852 8.25346334810547 7.30088530486195 7.00796084098466 0.207899473366481 0.207899473366481 0.211435668893818 0.215433009184404 0.220665935291448 0.218072411784405 0.225529137184621 0.207899473366481 0.235501625214635 0.210532149031792 0.214708282175139 0.214502252354490 0.210503781675913 0.207899473366481 0.216256970118084 0.207899473366481 0.221793979678238 0.214493874758550 0.210315103131127 1 1|0 -|/ 29917328 29917825 29917597.5 29917145 29919507 - gene protein_coding_gene FALSE TRUE AT1G79520.1 cation efflux family protein similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G16310.1); similar to cation diffusion facilitator 9 [Stylosanthes hamata] (GB:AAO38708.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.518392379028331 4.87801426367122 0.000504043481087562 1 5.40164561649454 14.892731124849 0.518392379028331 0.113402171273584
AT3G13180_at 6.80936328301419 6.44861071301346 5.42117653407167 5.22256875482957 5.94233137680963 5.99393861222418 6.60212743563977 6.17491912753303 5.49111858996505 5.66530185903045 5.10912201469165 5.95593926964904 5.65650639787746 5.01634702032463 6.19721422456283 5.72492707717743 5.30570757737975 5.05283322744346 5.75401897772263 0.233843514032366 0.229751855224895 0.237126124943071 0.232588916216334 0.227485282435598 0.237874318586129 0.228686190136347 0.237488649245901 0.237623080114509 0.239276578859809 0.230131481583515 0.231414723817864 0.235479392125591 0.235075266355211 0.234698688541532 0.228052197983999 0.238504058210418 0.249579368130190 0.232414763644702 3 3|0 -|/ 4236341 4237381 4236889 4236024 4240016 - gene protein_coding_gene FALSE TRUE AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to Os09g0477900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063467.1); similar to ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] (GB:YP_445018.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) -0.499119930708722 -4.87749704359716 0.000504456162306974 1 5.40095338830745 11.6464483513308 -0.499119930708722 0.103074023865563
AT1G35210_at 2.81119934356466 3.02217870594538 3.84807756498918 3.90140017019545 2.69161462385950 2.74090484703991 1.65895563907856 1.46984265045501 2.60213396431526 1.84792776376755 2.12530047588014 2.05323480658406 1.86185027978588 1.74067760980505 2.40941610409592 2.11685032310032 1.69959517667214 1.69288377936909 2.06670402150813 0.234705164756195 0.244487370350662 0.251236042603509 0.253207585376612 0.237929426109589 0.245930529516871 0.231109792447124 0.235218016254729 0.245326251087613 0.23908141214882 0.236361204923153 0.230315020954352 0.231819986173519 0.235327377623174 0.243340568793676 0.228320066887297 0.249020360266293 0.236483195353198 0.229391847017477 1 1 - 12896988 12897336 12897150 12896630 12897380 - gene protein_coding_gene FALSE TRUE AT1G35210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72240.1); similar to Avr9/Cf-9 rapidly elicited protein 75 [Nicotiana tabacum] (GB:AAG43558.1) 0.422588018154018 4.87705407316524 0.000504809884707529 1 5.4003604954069 4.83538735277857 0.422588018154018 0.0506162971340099
AT2G25440_at 3.77616059215539 3.66248471877804 5.51313698332221 4.80351558476059 3.66737877665703 3.05099157063321 2.04699866424443 1.2560198436809 2.12693017398437 1.60604490772485 1.69847018498299 1.90081002119062 2.00136922213106 1.4904737053271 1.40545809961866 1.61453478048302 1.83251987353916 1.98660999046407 1.74339379626333 0.230285112188062 0.23022283324399 0.228744251535010 0.230815221630796 0.219461099184511 0.222427308605420 0.218206149430879 0.225226395395539 0.22680261215745 0.227247180614093 0.226945035737225 0.228445566288184 0.217846969881468 0.220154774368362 0.221671501151547 0.222903227359757 0.234776922625479 0.228921893783754 0.218745680147723 2 2 + 10835910 10836362 10836143.455 10833814 10836481 + gene protein_coding_gene FALSE TRUE AT2G25440.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33020.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G32680.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.744582108094069 4.87554511666969 0.000506016789844105 1 5.39834057462687 5.25545435546627 0.744582108094069 0.213501026306738
AT1G33110_at 7.43073718566135 7.28741101160243 8.57853939672763 8.42976610910842 8.43882855708248 8.30458565181365 8.96761047451327 8.93200518776042 8.46475991124477 8.45000750249943 6.87329492540144 7.11045494995346 7.82068961340714 7.287701521511 6.38658361322904 8.61617334709124 7.81117051254119 6.96824339810141 8.50385316497935 0.183604849919324 0.175275977792327 0.171479924845722 0.171422050560441 0.171467292952451 0.179043714850428 0.173363585732177 0.174526305205974 0.179052587189724 0.180381773944556 0.181670213012811 0.175318897704919 0.177620826862581 0.181344513449345 0.190112349447293 0.171422050560441 0.179254895416527 0.184951309438799 0.172689434309688 1 0|1 /|+ 12007809 12008383 12008021.25 12004907 12008798 + gene protein_coding_gene FALSE TRUE AT1G33110.1|AT1G33110.2 MATE efflux family protein|transporter similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33080.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33090.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33100.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE91543.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528)|similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33090.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33080.2); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33100.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE91543.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.415047788644007 -4.87506977771994 0.000506397610059724 1 5.39770419239447 16.2122667024815 -0.415047788644007 0.0430780220996951
AT3G07680_at 10.4994054501789 10.4670319474460 10.7479680660567 10.6620843971434 10.4595165633239 10.4175083409965 9.89604848245179 9.8723859799132 9.74759384950443 9.11624516460785 9.78549749857603 9.91692163619169 9.59978309856377 9.69683111572613 10.0006840609667 9.53815518282868 9.78221559016243 9.71196403808868 9.17263690372137 0.0904684595718443 0.0871129466943783 0.0871129466943783 0.0884167617373334 0.091117564296211 0.0880849617391759 0.0889178558803599 0.0900178380036956 0.101784222104170 0.0939721336673053 0.0895250654120424 0.088392699447033 0.0887906312492313 0.0876526571199015 0.0932803284168296 0.0910024524330002 0.0904739027988893 0.0912228142520599 0.0944514390920246 3 3|0 +|/ 2455673 2456630 2456193 2455296 2456885 + gene protein_coding_gene FALSE TRUE AT3G07680.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 protein-related [Arabidopsis thaliana] (TAIR:AT3G22845.1); similar to Os08g0532900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062344.1); similar to coated vesicle membrane protein-like [Triticum aestivum] (GB:ABB90548.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.398282965954732 4.871465132157 0.00050929536069578 1 5.39287700208575 19.9274929035634 0.398282965954732 0.0179415652985414
AT1G68190_at 7.02565765196966 7.24547825284051 5.56945623047111 5.35535093968933 7.81585402693808 6.18114548714634 7.4761266426366 7.46161595620759 8.45392621303537 8.07270605487873 7.71415656977687 8.0268852057083 7.42561870952075 7.81544273345581 7.69779525842015 7.64623839637198 6.39962060261082 7.04336462245448 8.29444466241855 0.204444676145639 0.197008082930526 0.210447544311115 0.228161515321251 0.189798386292971 0.240449300791994 0.196701035683068 0.195165373892564 0.211827739394972 0.193256605509456 0.194763534201035 0.19037697023282 0.195592046811632 0.189798386292971 0.202091306294426 0.189798386292971 0.242214380721981 0.200710764343626 0.193310451350631 1 1 + 25563827 25564496 25564148 25562909 25564875 + gene protein_coding_gene FALSE TRUE AT1G68190.1 zinc finger (B-box type) family protein Identical to Putative zinc finger protein At1g68190 [Arabidopsis Thaliana] (GB:Q9C9F4;GB:Q8GY83); similar to COL9 (CONSTANS-LIKE 9), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G07650.3); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to CONSTANS-like protein [Ipomoea nil] (GB:AAG24863.1); similar to Os02g0724000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047975.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.937160001336679 -4.87045539093036 0.000510110221363176 1 5.39152438631881 14.6387519346878 -0.937160001336679 0.287845872274689
AT1G06240_at 4.8749749351098 4.89782191147156 4.24265008810852 4.90018139241237 4.92786279926784 4.21574387387679 6.29366746213362 6.3222830657304 5.34199319714363 5.84522453333008 5.36330912433448 4.97497155588293 5.24136008422575 5.5202895622817 4.95056047361897 5.59494372960204 5.60278893802302 4.72072763709874 5.27578024076442 0.219579630749904 0.216246230241713 0.218222904427557 0.221830387529502 0.221462528861153 0.258103233513891 0.224809334843699 0.221726374672044 0.229153433401399 0.215462040287671 0.215462040287671 0.224005942385101 0.224018874083949 0.216787955992795 0.215462040287671 0.222079644780170 0.241532366891976 0.220137715243764 0.217578493654385 1 1|0 +|/ 1911803 1912803 1912190.444 1911121 1913204 + gene protein_coding_gene FALSE TRUE AT1G06240.1 oxidoreductase/ transition metal ion binding similar to oxidoreductase/ transition metal ion binding [Arabidopsis thaliana] (TAIR:AT5G04520.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73001.1); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Protein of unknown function DUF455; (InterPro:IPR007402) -0.633562203737109 -4.87017113718363 0.000510339862300225 1 5.39114357688381 10.4512906302869 -0.633562203737109 0.167854247577788
AT3G52360_at 4.66782971228773 5.40956466069765 5.12083237167799 5.57209656492369 5.12910865108546 5.49709529535354 7.61563793503067 8.270246341747 8.12029685860978 7.89551576460924 8.01275715922401 7.6017379106237 8.11272663332378 8.318995275456 7.23970132300613 8.70465167720716 7.61732567419887 7.52904018898703 8.41519729344206 0.204535823361031 0.181487878331100 0.208578780507212 0.187068386652905 0.196741196021419 0.196439493313878 0.181160268445645 0.189228042019465 0.190445724675465 0.179378259134424 0.176922228322211 0.177387236776818 0.179806559050262 0.177382500629607 0.188692013223892 0.178523904560128 0.192316893530139 0.189732986506368 0.176922228322211 3 3|0 +|/ 19423334 19423646 19423484.3 19423098 19423896 + gene protein_coding_gene FALSE TRUE AT3G52360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35850.1) -0.706294716823808 -4.86542219559414 0.000514192596794725 1 5.38477939246645 13.9281949178373 -0.706294716823808 0.198654124454245
AT2G22690_at 6.04076025411049 5.88316301077244 6.0744663267119 5.98030168975909 6.47755856980414 6.66476425058842 4.84094935972719 5.40755535008856 5.18083674055362 4.81594736870207 4.82806118352106 4.753041684345 4.81368409200949 5.23004493147082 4.91326610996393 5.21312691408419 5.76922686250083 5.50895513046245 4.61609180871809 0.231369362016242 0.230207760484574 0.231960054260509 0.235429909524063 0.230207760484574 0.230207760484574 0.232435813565621 0.235643752896743 0.239418031906924 0.234689703145758 0.234240833457433 0.232847789793415 0.233843546075691 0.230207760484574 0.232328977480353 0.230905230987773 0.245002971952701 0.231319239353025 0.233176092688931 2 2 - 9656998 9657356 9657190.909 9656770 9658519 - gene protein_coding_gene FALSE TRUE AT2G22690.1|AT2G22690.2 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to Zinc finger, RING-type; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE86823.1); similar to Os06g0588900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057959.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.506941469880675 4.8651428644154 0.000514420167833077 1 5.38440492891148 10.9210071028799 0.506941469880675 0.108043805372788
ATCG00190_at 9.14243620038899 9.61892866985534 9.68166168551256 9.8927037265042 8.62028903051169 8.34075062871128 9.34019677348305 9.43131989220555 10.0710970359324 9.98999186589612 9.20160794809823 9.69806033326328 8.94903117854937 9.3874177093685 9.0828717228705 9.77690172472675 8.80227068118661 10.0854078892572 10.3016779010427 0.147805855873968 0.142573907191807 0.143385383842969 0.142780885974629 0.150250165374947 0.159485859043068 0.143615678268015 0.144770014933526 0.143713231766491 0.148430848617464 0.144328186289597 0.142573907191807 0.145778745457645 0.147472444114337 0.142573907191807 0.147166740763435 0.148179738543565 0.143426751313159 0.149339298051975 C C - 23166 23424 23298.625 23111 26329 - gene protein_coding_gene FALSE TRUE ATCG00190.1 Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. Identical to DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (rpoB) [Arabidopsis Thaliana] (GB:P50546); similar to NRPB2 (EMBRYO DEFECTIVE 1989), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21710.1); similar to DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (GB:P46818); similar to RNA polymerase subunit beta [Sinapis alba] (GB:CAA57814.1); similar to DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (GB:P50546); contains InterPro domain RNA polymerase beta subunit; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 7; (InterPro:IPR007641); contains InterPro domain RNA polymerase Rpb2, domain 2; (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6; (InterPro:IPR007120); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase, beta subunit; (InterPro:IPR007121) -0.498672617690991 -4.86476768152523 0.000514725996634052 1 5.38390194750394 19.0054700339160 -0.498672617690991 0.103548159711302
AT1G31490_at 2.47849576195085 2.16486983380554 1.68280380519513 2.00637055388927 1.80446140004958 2.09046837215854 2.04591704216907 2.42134858447958 2.26651351169460 3.03420639999948 2.58056772807472 1.94561567527178 1.81120065197359 2.01004737313266 1.95033641133076 2.12100234221143 1.93014122078816 2.50850344105869 2.96848289978345 0.206586723313938 0.200195898716767 0.207212989325243 0.205114022019156 0.199987240652563 0.202859991776570 0.203796796682402 0.199140385228554 0.203476643835834 0.204731407729954 0.204720980698782 0.205915795734018 0.21019222600123 0.202594307101717 0.202620891251521 0.202129620688709 0.213391501851164 0.213127910333433 0.198561343881456 1 1 - 11271732 11272208 11271935.727 11271209 11273275 - gene protein_coding_gene FALSE TRUE AT1G31490.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT1G78990.1); similar to putative anthranilate N-hydroxycinnamoyl/benzoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD69322.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.515427927228541 -4.8586719369428 0.000519721913560554 1 5.37572631967288 4.51863081553189 -0.515427927228541 0.112924698238011
AT4G15520_at 6.45003578216626 6.50365326011968 5.86223972879067 5.95788904749081 5.95793545270691 5.91010522882009 5.45507134332947 5.85315914759801 4.94960273739944 4.97806349576324 4.13774016031732 4.33719735342009 4.17318455871859 4.11055531228922 4.03042749869814 4.37347624661448 4.57071505247934 4.56868215439057 5.18575605899428 0.236055114597739 0.228006525872657 0.233450874568934 0.231857267424680 0.232780548012671 0.229021877450588 0.229769965036763 0.231538854790013 0.234814335820126 0.227290603841710 0.227290603841710 0.2327957403746 0.231697059618935 0.230344579429658 0.236848341925829 0.228838521055798 0.231826000690606 0.236378573804798 0.234495816006461 4 4|0 +|/ 8862905 8864318 8863742.8 8862813 8864616 + gene protein_coding_gene FALSE TRUE AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein similar to OBP33pep (GB:AAA79704.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) -0.446748828727127 -4.85472987049714 0.000522979976698075 1 5.37043571013167 10.6565384852952 -0.446748828727127 0.0719344038546809
AT3G07740_at 5.87115339449655 6.21375422277921 5.438879764137 5.30616520496647 6.55167140778787 5.74557546320781 6.02434808697653 6.3425520012582 5.39388353377736 5.88955230308026 4.93936467949 5.07441300082422 5.14318878859924 5.04726971243178 4.27594137125373 5.13520225425077 4.18999459055402 4.88536544810618 5.88886543042532 0.222076224810303 0.214970656862617 0.217941803333699 0.220568205584052 0.215078587730973 0.230037110599878 0.215279868487933 0.216847014378824 0.233776165610128 0.219473920457751 0.222848818058165 0.220500623375838 0.219578045717593 0.219206417289924 0.227273704352395 0.215562363647239 0.222953648575698 0.223345055606513 0.214970656862617 3 3 - 2470089 2470769 2470386.091 2469789 2473101 - gene protein_coding_gene FALSE TRUE AT3G07740.1|AT3G07740.2|AT3G07740.3 ADA2A (Arabidopsis adaptor 2A homolog); DNA binding / transcription factor|ADA2A (Arabidopsis adaptor 2A homolog) encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1 Identical to Transcriptional adapter ADA2a (AtADA2a) (ADA2A) [Arabidopsis Thaliana] (GB:Q9SFD5;GB:Q9SSE2); similar to ADA2B (PROPORZ1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G16420.2); similar to histone acetyltransferase complex component [Zea mays] (GB:AAM77037.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Transcriptional adapter ADA2a (AtADA2a) (ADA2A) [Arabidopsis Thaliana] (GB:Q9SFD5;GB:Q9SSE2); similar to ADA2B (PROPORZ1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G16420.2); similar to histone acetyltransferase complex component [Zea mays] (GB:AAM77037.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.620068454045868 -4.85369379682682 0.000523839851559654 1 5.36904474952235 11.2169838947594 -0.620068454045868 0.162895177935304
AT1G80500_at 8.40871645873353 8.32521367134417 8.33008708032052 8.28907091008856 8.42118321377757 8.19651394551509 8.46149618061713 8.5403089301045 7.51553334320226 7.20305054021533 8.4698545307917 8.32752493678587 8.19184830587102 8.15081270874075 8.24637243778202 8.21832834694353 7.88442540831863 7.51276118727092 6.79768456768827 0.175126602207527 0.162380812171032 0.166797714014467 0.166889887808788 0.164436147294171 0.169530334240571 0.162180235763832 0.162003218298355 0.182786336653309 0.170919894429805 0.173599252837830 0.165187236735013 0.162954051784414 0.174852184238249 0.173618679595409 0.164958676984304 0.17653216388857 0.172452325420975 0.177383483109499 1 1|0 +|/ 30276091 30276895 30276453.1 30275421 30277560 + gene protein_coding_gene FALSE TRUE AT1G80500.1 intracellular transporter similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20930.1); similar to putative TRAPP subunit [Cynodon dactylon] (GB:AAT68208.1); similar to OSJNBb0116K07.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE05549.1); similar to Os02g0613600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047420.1); contains InterPro domain Sedlin, N-terminal; (InterPro:IPR006722); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.414215738168353 4.85286329858289 0.000524530189913615 1 5.36792964316067 16.0202390320701 0.414215738168353 0.044236634928876
AT1G43620_at 7.33875601598308 7.74344509817803 7.60427185758618 7.7158683363471 7.8973012518156 7.8429155360663 7.01320749687291 7.28154788563588 6.54302891460484 6.85070255456436 7.4945925714894 7.1552762081777 7.17732098187188 7.5732520801063 7.01838027675303 6.90806054830164 6.86556168409615 6.80801142765652 6.43249539385465 0.199763922627750 0.197985623678179 0.202749720668142 0.194961351199305 0.197118418448556 0.207408491813784 0.204846060512843 0.196577365779547 0.209447977200307 0.199356739733797 0.197934532099860 0.203954301090336 0.192567295366477 0.201629490200264 0.199162469036105 0.198327192366845 0.225632438256285 0.204471651122858 0.203450327735032 1 1|0 -|/ 16428150 16428884 16428477.7 16427852 16432640 - gene protein_coding_gene FALSE TRUE AT1G43620.1|AT1G43620.2|AT1G43620.3 UDP-glucose:sterol glucosyltransferase, putative similar to UDP-glucose:sterol glucosyltransferase (UGT80A2) [Arabidopsis thaliana] (TAIR:AT3G07020.1); similar to Os01g0867600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044914.1); similar to sterol glucosyltransferase [Withania somnifera] (GB:ABC96116.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Glycosyl transferase, family 28; (InterPro:IPR004276) 0.468582402959139 4.85076717914622 0.000526276831218759 1 5.3651146504608 14.4215638148012 0.468582402959139 0.0867332637680947
AT3G14220_at 6.71773923077984 6.97075555945784 5.35070322541018 5.6925755105462 6.17796836098745 6.26791807412804 6.49595825266358 6.92130121584425 6.90618967547713 7.01851187776417 7.0669198088244 7.87198842100345 6.8641643188312 6.84608291990866 7.51006867314621 6.46950000027387 6.2481362758139 6.9603502298944 7.30366795278945 0.170535344668333 0.168764183978993 0.173169798585151 0.172226829352993 0.166663327481023 0.177784898595686 0.179344128588416 0.168380650223193 0.171880226204149 0.163817023163299 0.163817023163299 0.170923598705487 0.166276258665826 0.177013406099855 0.173673709555958 0.165516937035097 0.173786938275687 0.164508897623936 0.167715290700597 3 3 + 4733719 4734454 4734125.818 4732900 4734616 + gene protein_coding_gene FALSE TRUE AT3G14220.1 GDSL-motif lipase/hydrolase family protein similar to ESM1 (EPITHIOSPECIFIER MODIFIER 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G14210.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.50030955481666 -4.85066095517141 0.000526365508208904 1 5.36497197583396 13.3522521785466 -0.50030955481666 0.105251031209651
AT3G23870_at 4.29218434813672 3.88023525329657 4.36216220982442 4.01693610026796 5.85952775553327 4.73758788193946 4.19770212865289 3.67909092715041 1.95705746516934 2.46296476820241 2.88775914623595 3.02537709392223 3.22618898781717 3.03487412675688 2.98700135003396 3.02203761718031 3.65306051430691 2.69702200060144 2.23201770413793 0.259807401823880 0.250979642711859 0.254309695120739 0.264648279011604 0.260490443165466 0.273515138542066 0.257898079494862 0.250979642711859 0.250979642711859 0.257174393998079 0.250979642711859 0.250979642711859 0.250979642711859 0.256192577467715 0.26190328474401 0.253580838523036 0.26040728280212 0.259522407726106 0.257924624867501 3 0|3 /|+ 8620953 8621726 8621357.6 8619199 8621914 + gene protein_coding_gene FALSE TRUE AT3G23870.1 permease-related similar to permease-related [Arabidopsis thaliana] (TAIR:AT4G13800.1); similar to OSJNBa0069D17.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD40575.1); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); similar to Protein of unknown function DUF803 [Medicago truncatula] (GB:ABE89975.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.790534390676217 4.85025517705304 0.000526704401707454 1 5.36442693699233 7.02018420082192 0.790534390676217 0.233244677112142
AT4G05390_at 4.35970060110939 4.52789218150462 5.42107505516821 5.43738076680043 5.05834737687012 5.26721808218015 5.77785243308612 5.56813218001131 4.23684629569992 5.01543883514937 5.3571634228031 5.46710112643147 5.01000402178938 5.21873352469486 5.27576044845708 5.37665937020712 5.73016580375727 5.55155561520088 5.00446160604723 0.20206873909584 0.198099964490442 0.192303978975202 0.188701616124819 0.188729830411604 0.190124036302420 0.188798139341936 0.196085382860478 0.194887414521010 0.190569871936357 0.192924549519468 0.190151693469653 0.193344713367325 0.205375225334375 0.189779943142841 0.189262822578084 0.201476411206404 0.193359285815774 0.194890638944917 4 4 - 2738926 2739437 2739169.727 2738712 2740652 - gene protein_coding_gene FALSE TRUE AT4G05390.1 ATRFNR1 (ROOT FNR 1); oxidoreductase Encodes a root-type ferredoxin:NADP(H) oxidoreductase. similar to ATRFNR2 (ROOT FNR 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G30510.1); similar to ferredoxin-NADP reductase (EC 1.18.1.2) - garden pea (fragment) (GB:T06773); similar to Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (FNR) (GB:Q41014); contains InterPro domain Ferredoxin--NADP reductase; (InterPro:IPR012146); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.429377487847839 4.84779209082862 0.000528766445968818 1 5.36111790920709 10.2400207490745 0.429377487847839 0.058981904013204
AT3G59350_at 5.5819481625219 5.45562349743747 4.53647271639465 4.08502195514441 5.69949527470281 6.11503161557805 2.55298281783163 2.73436637825104 3.61634922018455 2.87790973339809 4.10964933642629 3.22116874790482 2.99823203905739 3.32708061643084 3.50010902448957 2.89208354467975 2.80868445790365 3.20211782053034 3.27676001729921 0.23425417588105 0.224890138052860 0.229064545227570 0.224890138052860 0.227865297711581 0.237448923537360 0.236690271406283 0.227081949122169 0.226482350117783 0.224890138052860 0.236698868819485 0.224890138052860 0.227994503322964 0.228753723548452 0.233955095864695 0.227883470937825 0.224890138052860 0.227128166549865 0.225905189761672 3 3|0 +|/ 21944981 21945835 21945285.444 21943502 21946169 + gene protein_coding_gene FALSE TRUE AT3G59350.1|AT3G59350.2|AT3G59350.3 serine/threonine protein kinase, putative|kinase similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G43230.1); similar to protein kinase Pti1 [Glycine max] (GB:AAO92595.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.514079775622508 4.84707646086931 0.000529367153196359 1 5.36015629669227 7.8523163132603 0.514079775622508 0.112862446357281
AT2G27530_at 10.4868716607807 10.4198672798781 9.98540599155914 10.0452667226427 10.1286741015114 9.7699671063856 10.5884163778426 10.6863731157333 10.0453864631092 10.1678283885350 10.0394160594792 10.1768274973233 9.85967468571015 9.40092848416175 10.3839075098531 9.32891382720304 9.33497156467687 9.4824039384904 9.97971825483717 0.140650530683556 0.142586576625280 0.142237581490800 0.141594718085920 0.140509554533401 0.142997548150997 0.142759702084567 0.142942334299308 0.164764672632599 0.140089463167124 0.143437474133052 0.142199242806987 0.140367875097927 0.156772747661634 0.142581627129777 0.145736073420641 0.156534211941245 0.149277352806175 0.139595100216255 2 2|0 -|/ 11770536 11771340 11770975.6 11770298 11771922 - gene protein_coding_gene FALSE TRUE AT2G27530.1|AT2G27530.2 60S ribosomal protein L10A (RPL10aB) Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar to Ribosomal protein L1 [Medicago truncatula] (GB:ABE94025.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.438242108832743 -4.84632845390201 0.000529995808291416 1 5.3591510815294 20.1714510352197 -0.438242108832743 0.066200845324375
AT4G20880_at 4.12318497261175 4.8148161828734 5.8780995427442 5.76928278833229 5.67076369118312 5.5353405413327 4.75311543804966 5.17654177269122 5.70746862412086 6.19273392472653 6.76060568057458 6.65469089627723 6.17114862168159 6.32517578892797 5.06013494999398 6.14732778348577 6.07406603341575 5.90869165395828 6.04669439378675 0.254433157472683 0.242341307151837 0.241363544667946 0.243615336398098 0.247704917555261 0.260335802844153 0.250844890376766 0.253187771302146 0.256586494853196 0.268722531323727 0.245904085463049 0.241363544667946 0.246587997981534 0.245941802007024 0.25028638881 0.241604920575391 0.259343186645123 0.259032797486720 0.249366689880498 4 4 - 11179407 11179972 11179643.273 11179126 11180810 - gene protein_coding_gene FALSE TRUE AT4G20880.1 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) similar to ethylene-responsive nuclear protein -related [Arabidopsis thaliana] (TAIR:AT5G44350.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE90052.1) 0.57594412225146 4.84372721827082 0.000532188135322608 1 5.35565462048592 11.2751576946860 0.57594412225146 0.143523165554212
AT3G55950_at 3.98187489811347 4.17374863384273 6.2707493860876 6.2806933960525 3.87866512079701 4.19953090659293 4.11619996800975 4.17133590338728 4.27340469486308 4.26262733693968 4.09597441651414 3.94472734551586 4.04967775647109 4.09445127759154 3.69875161583408 4.70849454883052 4.32401435636392 4.17904990391278 4.39322820688668 0.176561385234739 0.171494017441159 0.184334365622638 0.189794150785206 0.171517387691385 0.183345770619163 0.171449792116439 0.175101708355244 0.176455688770064 0.175150635335549 0.177779109564778 0.176908219345446 0.171317767871111 0.171317767871111 0.183572712115281 0.179132071248217 0.177971550632331 0.180581700843676 0.174138836880974 3 3 - 20764884 20765442 20765181.091 20764670 20767374 - gene protein_coding_gene FALSE TRUE AT3G55950.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47850.1); similar to cytokinin-regulated kinase 1 [Nicotiana tabacum] (GB:AAG25966.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.436879545638483 4.8424540105353 0.000533264685876484 1 5.353942797591 8.85742280937327 0.436879545638483 0.0654204397751699
AT2G20320_at 4.61574794206709 4.90036048644106 4.86378236322832 5.22262655228371 5.27180159397590 5.38375764735203 3.87527771230296 3.90995074684929 4.15183328856679 3.67008738990531 3.72681070094985 3.68665817030938 4.06898753526645 4.21503271013422 3.43397195377115 3.8889393628858 4.1904998742969 3.4909961617856 3.51477889956667 0.249171457141835 0.235115970206481 0.241755455420814 0.250114433753484 0.240636599236846 0.251873550076479 0.236411657917576 0.236409699432285 0.236217306038635 0.235655798002396 0.240740158391435 0.235115970206481 0.238454815401705 0.240610936214107 0.247367028081296 0.235115970206481 0.239266494073679 0.240880477599403 0.235115970206481 2 2|0 +|/ 8777728 8779186 8778473.111 8774187 8779217 + gene protein_coding_gene FALSE TRUE AT2G20320.1 DENN (AEX-3) domain-containing protein similar to DENN (AEX-3) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35560.1); similar to Os03g0145500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048949.1); similar to DENN; dDENN; uDENN [Medicago truncatula] (GB:ABE88628.1); contains InterPro domain DENN; (InterPro:IPR001194); contains InterPro domain uDENN; (InterPro:IPR005113) 0.459497508311778 4.83634907943848 0.000538458699284953 1 5.34573076376595 8.56373158957313 0.459497508311778 0.0818147526575802
AT3G50685_at 11.3994214467235 11.4444023750797 10.5954504356208 10.6760857662951 10.8287902436765 10.9725264946101 11.7489139032099 12.1665545990028 12.2594529974475 12.3827649867311 12.4986305784415 12.6179408334710 12.1732815922501 12.4294722237042 12.3873351807181 12.3771632377648 11.7544812924621 12.3389350589599 12.2806346953862 0.0626717961194377 0.0639859164079691 0.0620714656247257 0.0637259962072079 0.0608029241729625 0.0653664630019635 0.065051367194749 0.0649389679168037 0.0652851815434177 0.0620509931657158 0.062065938108893 0.0618735255164513 0.0640010521041714 0.0612324335800734 0.0637756650796826 0.0608029241729625 0.0726617838952212 0.0638535568853205 0.0608029241729625 3 3 - 18845264 18845607 18845429 18845136 18845815 - gene protein_coding_gene FALSE TRUE AT3G50685.1 similar to p-166-4_1 [Pinus resinosa] (GB:AAY17046.1); similar to Os10g0213700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064326.1) -0.453536203043383 -4.83261105037207 0.000541665317158231 1 5.34069931484125 23.5439044378155 -0.453536203043383 0.0780875879164976
AT1G50660_at 7.33729556231585 7.57028207340978 6.4984987310872 6.90772412463153 6.65446972424382 6.94225188527102 7.33900943091812 7.42251746226259 7.17046750168191 7.54457477712732 7.4827764432503 7.15274989487874 6.93210281438173 7.28425331380457 7.12616361221722 7.40141362365181 6.43366561234317 7.54699304818116 7.69379226284971 0.164321057181851 0.160455330721114 0.161693021141221 0.163146408140617 0.167084650666455 0.167822971688549 0.169008620659195 0.165358718002253 0.172681664587345 0.165347154945839 0.162161215195403 0.160455330721114 0.164765550453272 0.163745008472468 0.160455330721114 0.160455330721114 0.162518978676716 0.164436066230160 0.161823422862277 1 1 + 18777475 18777895 18777667.091 18774605 18778354 + gene protein_coding_gene FALSE TRUE AT1G50660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20350.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44287.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.483068367232955 -4.83167897405057 0.00054246802221435 1 5.33944434059355 14.4038192788799 -0.483068367232955 0.0965918369222319
AT3G06110_at 7.88313506786005 7.5933284989606 8.31917071872426 7.94540901012403 8.64277826140217 8.2291943431736 7.70310596547864 7.14091260392048 6.68291144712125 7.07247735236532 7.463674806734 7.35448693814673 7.50144357463038 7.4253689521354 7.37946868375561 7.61624999116679 7.32251503648454 7.19529430612489 7.10142112458144 0.168169628024131 0.158559527793918 0.167306836461552 0.163524276631511 0.172589491309112 0.1658032195906 0.156669627502196 0.158588371942951 0.174600967199713 0.168628773479429 0.158810073932403 0.160878675855602 0.165605649749722 0.161906599194536 0.161965959272926 0.154541787326571 0.161030746108269 0.169021866331748 0.165071522055529 3 3 + 1843528 1844510 1843992.455 1843478 1844782 + gene protein_coding_gene FALSE TRUE AT3G06110.1|AT3G06110.2 dual specificity protein phosphatase family protein similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.1); similar to Os01g0390900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043112.1); similar to dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum] (GB:BAE44441.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.579530180379513 4.83086675953135 0.000543168526095626 1 5.33835062671467 15.1119206891238 0.579530180379513 0.145900445840054
AT3G22190_at 4.48799070385872 4.40294792887947 3.71492092336890 3.60978440233333 3.80991909543209 3.84306422259545 3.49347478161792 3.39069718472199 2.77508265746296 2.70786874113476 3.95226736040638 3.73919753826976 3.32594516679189 3.98323348706246 4.39397382011182 3.20348282365847 3.85738392401369 3.51093159231518 2.74967652547605 0.227320422481673 0.212277449373672 0.212994532398417 0.217392058096613 0.213367750944546 0.222109091794227 0.220353197219957 0.21385414264711 0.225113193403566 0.210853274516537 0.212950946743261 0.213526229898017 0.209322227146778 0.219351665859770 0.213721326025353 0.212249187612362 0.215737122724796 0.216154683296894 0.214694079236833 3 0|3 /|- 7831721 7832190 7831947.1 7831668 7833519 - gene protein_coding_gene FALSE TRUE AT3G22190.1 IQD5 (IQ-domain 5); calmodulin binding similar to IQD6 (IQ-domain 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G26180.1); similar to IQ calmodulin-binding re (GB:ABE78154.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.401118583608519 4.83037272300724 0.000543595080673546 1 5.33768530883261 7.08910554140263 0.401118583608519 0.0299478560882781
AT4G01120_at 3.88962421788808 3.95402652535535 4.08278657005316 3.81055904206750 4.68525122911506 5.07121407441442 3.86409493361496 3.58162451970293 3.72703090791244 3.92341968169610 4.77925796090152 4.19083091447595 4.58311073801968 4.20948245437351 4.69633701075536 4.07050271164767 4.44488071115669 4.44192965476324 4.51185539150752 0.212377873891232 0.212104353844506 0.207226137663690 0.216042254569146 0.207226137663690 0.217422559164367 0.211337852001836 0.210217790433578 0.210676609289359 0.213160591491010 0.208947071556498 0.210881190763551 0.210662032202043 0.21297172161698 0.21574666925327 0.213004050470319 0.208763742975845 0.210555564197144 0.208990386802847 4 4|0 -|/ 481942 482928 482453.4 481597 484483 - gene protein_coding_gene FALSE TRUE AT4G01120.1 GBF2 (G-BOX BINDING FACTOR 2); DNA binding / transcription factor bZIP (basic leucine zipper) transcription factor that binds to the G-box regulatory element found in many plant promoters. GBF2 nuclear localization is increased by blue light Identical to G-box-binding factor 2 (AtbZIP54) (GBF2) [Arabidopsis Thaliana] (GB:P42775); similar to GBF3 (G-BOX BINDING FACTOR 3), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46270.1); similar to G-box binding protein [Sinapis alba] (GB:CAA76555.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.481524852789278 4.82829491792207 0.000545392946922246 1 5.33488666199492 8.35796939563496 0.481524852789278 0.0958873290938162
AT1G61360_at 4.49403073014413 4.33434658253788 3.491418720428 3.30965750486308 3.89383472075539 3.61091257975938 2.16897945986044 2.43365816692776 5.60823643932026 3.95544189205764 2.90691197987119 4.87964402535107 2.75698485383542 3.59294284778726 4.22237058130603 2.89284925657346 2.53750802646851 2.49867918730655 3.67660066942885 0.223470703886168 0.219166923610783 0.21856074199175 0.21575117934383 0.216876594912138 0.21575117934383 0.224453668675205 0.221569583070326 0.230956067670221 0.21575117934383 0.21575117934383 0.222805830094072 0.220334333362142 0.217331341187222 0.219096014559554 0.218998616926924 0.224032330470621 0.221415174394657 0.220955506982755 1 1|0 -|/ 22641568 22642049 22641760.111 22641393 22644681 - gene protein_coding_gene FALSE TRUE AT1G61360.1 S-locus lectin protein kinase family protein similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G11280.2); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.454368921102949 -4.82634541789686 0.000547085502521091 1 5.33226013994578 7.31681114736685 -0.454368921102949 0.0790456274270848
AT3G09030_at 5.87670075417036 5.8369202025076 5.92826919600494 6.32684120559274 6.39772847103528 6.89854534024635 4.81457389813349 5.35279626361908 4.7819055203044 4.20039394383154 4.62600644340253 4.62057000815224 4.80718580079381 4.86029819014246 4.36191232539078 4.95635326328326 5.08744505484956 4.57616009554987 4.5207463300733 0.219030528756771 0.219841847154627 0.232350791868489 0.219030528756771 0.222080610050181 0.230830873534385 0.219030528756771 0.227968664313879 0.234386248782487 0.219030528756771 0.221366818826728 0.219030528756771 0.22495136015965 0.221663445904749 0.219030528756771 0.219030528756771 0.225412873207404 0.220132517588211 0.219030528756771 3 3 + 2755643 2756193 2755867.636 2754787 2756512 + gene protein_coding_gene FALSE TRUE AT3G09030.1 potassium channel tetramerisation domain-containing protein similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G41330.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28655.1); contains InterPro domain K+ channel tetramerisation; (InterPro:IPR003131); contains InterPro domain BTB; (InterPro:IPR000210) 0.576787203285674 4.82622968956175 0.000547186152028438 1 5.33210420041818 10.5480502476297 0.576787203285674 0.144885410797532
AT3G05750_at 3.31310632359914 3.03657738959587 2.62585774504301 2.20524575091400 2.83781332012544 2.98374217218886 4.18872457914732 3.52250087185937 3.12772403921984 4.11529087015461 3.56168386082736 3.70385479220715 3.40513099265682 2.64207367337716 3.43606449081327 3.5158327577101 3.37653512385497 3.389731721588 3.82132603952142 0.180478392154491 0.189137770221467 0.180981358473038 0.182313718465706 0.180286360587016 0.184715606453799 0.188164839738187 0.186448168299244 0.185257951262493 0.181756346990821 0.183758690296727 0.179073180802533 0.186388169437321 0.185322282019819 0.182986242115234 0.181170833581131 0.189158992111990 0.184175093271384 0.179073180802533 3 3 + 1706966 1707267 1707085.364 1704126 1707684 + gene protein_coding_gene FALSE TRUE AT3G05750.1|AT3G05750.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26910.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58650.1); similar to Os03g0831700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051796.1); similar to Os03g0302900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049873.1); similar to Subtilisin-like serine protease [Pediococcus pentosaceus ATCC 25745] (GB:YP_803612.1); contains domain Nitric oxide (NO) synthase oxygenase domain (SSF56512)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26910.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58650.1); similar to serine-threonine rich antigen [Staphylococcus aureus] (GB:AAL58470.1); similar to Os03g0831700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051796.1); similar to Os03g0302900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049873.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.5806563834926 -4.82600082041919 0.000547385258212974 1 5.33179580100363 6.62268455718978 -0.5806563834926 0.146691973977335
AT3G07520_at 4.60591885812891 5.36588629046317 6.21146159507066 6.65411504540841 5.88848029484907 5.66041615965127 3.12229523548163 2.63500303567491 5.07710808125562 3.46582658289665 3.34345701898556 2.91582178931317 3.45797810775024 2.89184780319713 2.92634340384986 3.56751364404537 3.64181837932713 3.17482237726913 3.77923705251003 0.309221573750372 0.305655024576291 0.302683869178367 0.299747035718521 0.298052984492184 0.290380820260897 0.287639658497232 0.287639658497232 0.293044349800049 0.297923998275590 0.287639658497232 0.287639658497232 0.291667123748120 0.287639658497232 0.292541889744566 0.287639658497232 0.297169137753334 0.288685580610951 0.293825841160673 3 3 - 2395164 2395774 2395420.636 2394897 2398297 - gene protein_coding_gene FALSE TRUE AT3G07520.1 ATGLR1.4 (Arabidopsis thaliana glutamate receptor 1.4) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 1.4 precursor (Ligand-gated ion channel 1.4) (GLR1.4) [Arabidopsis Thaliana] (GB:Q8LGN1;GB:Q8LGN2;GB:Q9SRR4); similar to ATGLR1.3 (Arabidopsis thaliana glutamate receptor 1.3) [Arabidopsis thaliana] (TAIR:AT5G48410.1); similar to ATGLR1.2 (Arabidopsis thaliana glutamate receptor 1.2) [Arabidopsis thaliana] (TAIR:AT5G48400.2); similar to GLR1 (GLUTAMATE RECEPTOR 1) [Arabidopsis thaliana] (TAIR:AT3G04110.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) 0.651951081027065 4.82353443395105 0.000549535766176938 1 5.32847177803542 8.69161750818498 0.651951081027065 0.178419233596550
AT1G24530_at 6.51134617812821 6.68100431764362 4.17697768919239 4.07647058556387 4.80704153714058 4.08092308240473 2.5599252803868 2.47144936014434 4.26680723513215 3.24295597557069 2.86545177844345 3.01636423034654 2.59058376801002 3.14445692408043 3.09157168480331 2.78784928214584 2.46599060461788 2.87031378220033 3.52587071387132 0.318472935414844 0.320433517435698 0.299138013035738 0.298003392549153 0.299899615755074 0.323486382849342 0.296189056123834 0.305614972327346 0.297235822275633 0.302029066475513 0.295162960348317 0.297521484690309 0.298310159411377 0.295162960348317 0.30004786969224 0.295162960348317 0.306834722062720 0.310599014948040 0.300057474835135 1 1 + 8693969 8694363 8694149.273 8693214 8694692 + gene protein_coding_gene FALSE TRUE AT1G24530.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G24130.1); similar to WD40-like [Medicago truncatula] (GB:ABE82381.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.547524972597047 -4.82351089193184 0.00054955633600593 1 5.32844004458260 7.68695095300341 -0.547524972597047 0.131106647418545
AT1G32460_at 10.9933593651785 11.1286260368593 11.1459023823665 11.1945038773676 11.3914717026458 11.1746692245001 10.2928550884677 10.2652840025867 10.2496648865030 10.2693184099532 10.7106211504325 10.4354938039556 10.4646286556078 10.5648558936062 10.2522633116397 10.7589796906855 10.4813423627541 10.3752230978144 10.1911801926105 0.0629549992741284 0.0624266062061305 0.0619654839776133 0.0629099027856258 0.0623290116706001 0.0611827693039688 0.061536304411882 0.0661106105032525 0.0699713526326948 0.0626086658950054 0.0611827693039688 0.0615453136222401 0.0619261123914542 0.062503558179076 0.065355799565224 0.0630155750864901 0.0730423141641932 0.0661762855992851 0.0625555722884478 1 1 + 11738860 11739087 11738969.091 11738098 11739306 + gene protein_coding_gene FALSE TRUE AT1G32460.1 unknown protein 0.412655253118336 4.82336993530062 0.000549679513803073 1 5.32825004011927 21.3194075394137 0.412655253118336 0.0452671628519438
AT3G44850_at 4.40298958430931 4.69820678835659 4.79310690640365 4.84248207803134 4.65306182891319 4.28937861482271 4.70857603735375 4.60263482066105 3.70106085928179 4.13102605379001 4.56791043871452 5.67052865852868 4.77835537775977 5.10927853580657 4.62063628825353 4.92863527117355 4.64559854949722 4.77141248665189 4.18747828531577 0.232312381817534 0.228262878435686 0.233361922976127 0.237899706314212 0.227634907792722 0.230494104940577 0.234706298489162 0.233878917598583 0.246871136018425 0.230287817900117 0.237116326605153 0.231182712406398 0.230339469363835 0.22640271183963 0.228222219415577 0.22640271183963 0.232631920793093 0.22640271183963 0.227305365046641 3 3|0 -|/ 16385605 16386441 16385979.1 16385602 16387916 - gene protein_coding_gene FALSE TRUE AT3G44850.1 protein kinase-related similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G22840.1); similar to SRPK4 (SER/ARG-RICH PROTEIN KINASE 4), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT3G53030.1); similar to putative serine/ar (GB:AAS79595.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.460714133687454 4.82109999442123 0.000551667166013834 1 5.32518975915427 9.07033767415348 0.460714133687454 0.0835479755134346
AT2G46070_at 6.02709613948946 6.31391588792851 5.58621064871276 5.82501814783427 7.17442835578833 6.93854913036725 5.38718005872661 5.11661829580838 5.64236906747002 5.49936672538734 6.02133088331999 6.7063769712061 6.20503289018606 5.91407438548624 5.86043766948202 5.74068416657337 5.72796853902408 5.78066164884818 6.03225630478535 0.218142836359682 0.206601464282206 0.216941066787461 0.219518835727786 0.206601464282206 0.226818056544939 0.208933187120336 0.215786126278290 0.233674738800633 0.208789804579190 0.206601464282206 0.212333137887817 0.206601464282206 0.225049873199875 0.227499605345869 0.211445229186077 0.222610742599512 0.218543659350896 0.211103700240908 2 2 - 18953267 18953922 18953554.636 18953054 18954896 - gene protein_coding_gene FALSE TRUE AT2G46070.1 ATMPK12 (Arabidopsis thaliana MAP kinase 12); MAP kinase/ kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 12 (EC 2.7.11.24) (MAP kinase 12) (AtMPK12) (MPK12) [Arabidopsis Thaliana] (GB:Q8GYQ5;GB:O82361); similar to ATMPK4 (MAP KINASE 4), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G01370.1); similar to double HA-tagged mitogen activated protein kinase 12 [synthetic construct] (GB:ABG54339.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351) 0.469877918452799 4.81627213792198 0.000555919902131233 1 5.31867793661624 11.9057445464886 0.469877918452799 0.089611118202381
AT4G14540_at 8.09021604356645 8.16740554823124 7.60542898489598 7.28964098726665 8.54357612303966 7.93449912665794 8.5888079184878 8.05035259476164 9.24990213891033 9.35364334684092 8.50112898258386 8.84767705722543 8.8554229104021 8.6652353434315 8.37174873857055 8.80216704127428 8.48754271935992 8.10003196347655 9.52916428861413 0.160675584427527 0.154135554882378 0.167943213233908 0.167955445812161 0.161019666603871 0.165597548136732 0.161966434839877 0.163663212298390 0.16316546909606 0.154333888661269 0.160532435563143 0.156345433106017 0.151403893261842 0.154303471617019 0.168082137963649 0.151837413428 0.164954319154550 0.157085278497345 0.15151717235749 4 4 + 8344661 8345116 8344912 8344612 8345214 + gene protein_coding_gene FALSE TRUE AT4G14540.1 CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family Identical to Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) (NFYB3) [Arabidopsis Thaliana] (GB:O23310); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) [Arabidopsis thaliana] (TAIR:AT5G47640.1); similar to transcription factor Hap3b, putative [Brassica oleracea] (GB:ABD64993.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.58980490052233 -4.81484299941593 0.000557185420988696 1 5.31674952392368 17.0119605505279 -0.58980490052233 0.151518149231292
AT1G10720_at 5.71422223740023 6.08964833224411 6.3659616854509 6.22521206340178 6.93504122481465 6.27732546496664 5.99651031864803 5.33978247292918 5.36747350100132 5.32383640801072 5.97078677644559 6.22128249989588 5.73185162089055 5.94979961661784 6.17471951606627 6.13067203215078 5.84873830226655 6.14994891664653 5.51395831130866 0.203278979307857 0.208091030968794 0.206927001834448 0.204227516616296 0.209464536308520 0.215291696577508 0.199573070475555 0.206119532943444 0.218302234440551 0.207429094724505 0.204488131522937 0.201189474323114 0.199592390305577 0.214484808963164 0.204474879457968 0.202704929674053 0.216226694117599 0.203945882596415 0.209202542958709 1 1|0 +|/ 3563757 3564304 3564073.7 3562953 3564760 + gene protein_coding_gene FALSE TRUE AT1G10720.1 BSD domain-containing protein similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49800.1); similar to putative BSD domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38477.1); contains InterPro domain BSD; (InterPro:IPR005607) 0.643156553017685 4.81438506315718 0.000557591571853104 1 5.31613153002736 11.8299534667633 0.643156553017685 0.175173440601959
AT2G04460_at 4.05585671862225 4.46320264852726 1.84408820682287 2.32198804921849 1.74530992399422 2.45168197594749 2.03991349041718 2.64568120834941 2.7113255769732 2.58051767682489 2.28822969829637 2.44569317224284 2.25743157325154 1.98526594748651 2.88043669401134 2.34656537653486 2.46818212519523 2.14832364129725 2.26421886987745 0.282382293320687 0.27663591682873 0.274269088591831 0.26478061606797 0.265633164927125 0.265615039544756 0.262606636497515 0.270514887376152 0.262606636497515 0.262606636497515 0.270488848971504 0.268878286231279 0.271523253253135 0.262606636497515 0.269539407878848 0.262606636497515 0.264423418235805 0.262606636497515 0.262606636497515 2 2 - 1547802 1548099 1547937.4 1547685 1548254 - gene protein_coding_gene FALSE TRUE AT2G04460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10090.1); similar to pol polyprotein [Citrus x paradisi] (GB:AAK70407.1) -0.688283911751141 -4.8142129222514 0.000557744327122879 1 5.31589921297101 5.1315669792864 -0.688283911751141 0.194271490078267
AT1G62960_at 7.73505661603788 7.91746846111056 8.19935947993155 8.28614850948858 8.73445601074039 8.05972232184994 9.45959931243362 9.17179460438773 9.74664342453299 9.84579747783347 9.3228647195071 8.84049635604154 8.86691833888083 8.98390874000223 8.5153928541653 9.39128628847602 8.89315244241975 8.98571099600519 9.86355819683994 0.146409468342211 0.143997037629806 0.148873118071920 0.151753472124006 0.142457507287834 0.151122882076756 0.138992944524038 0.150083454508472 0.151485757188970 0.144760584777130 0.143684189720788 0.140500581658813 0.137642398474483 0.151019972247434 0.145314395233346 0.137642398474483 0.163032054346219 0.143269686471744 0.139103151426817 1 1 - 23322017 23322400 23322238.545 23321852 23323981 - gene protein_coding_gene FALSE TRUE AT1G62960.1 ACS10 (ACC SYNTHASE 10); 1-aminocyclopropane-1-carboxylate synthase Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. Identical to Probable aminotransferase ACS10 (EC 2.6.1.-) (ACS10) [Arabidopsis Thaliana] (GB:Q9LQ10); similar to ACS12 (1-Amino-cyclopropane-1-carboxylate synthase 12), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT5G51690.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar 'Kardinal'] (GB:AAQ88100.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.547379096227361 -4.81207695899956 0.000559643427429899 1 5.31301613627847 17.8422670186672 -0.547379096227361 0.131669868642211
AT2G33330_at 3.24912081646897 3.45743745974292 2.43750027987539 2.15553807183827 2.8859479015283 2.25743003084107 4.23668123505542 3.89576729578269 4.31983664835912 4.71317956218408 5.10777734191241 5.54503134749199 4.34316615767027 4.88953398264952 5.79284129435657 4.61394500047664 3.50497290276337 4.47968415306289 4.85390384946555 0.268989737656418 0.250018225904777 0.287974328585648 0.27371810728722 0.262326163031266 0.274734091643485 0.249345980854641 0.248115468894192 0.260452978456463 0.254931353434255 0.253221678508082 0.265492398476049 0.259078627154318 0.256191805654716 0.260767830115789 0.248115468894192 0.264064783387623 0.248115468894192 0.262564358610740 2 2 - 14130586 14131753 14131260 14129967 14132214 - gene protein_coding_gene FALSE TRUE AT2G33330.1 33 kDa secretory protein-related similar to 33 kDa secretory protein-related [Arabidopsis thaliana] (TAIR:AT1G04520.1); similar to Domain of unknown function, putative [Medicago truncatula] (GB:ABE87977.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -0.560000980765017 -4.81124799985901 0.000560382298159896 1 5.31189700885313 7.77872407433373 -0.560000980765017 0.137810149181406
AT1G14810_at 9.07502264095697 9.19246690313755 8.88899553919449 8.54763374994098 8.6429509249139 8.79652952922653 8.59247627649896 8.58003700652208 6.95769730394034 7.85551428924939 8.64624739235222 9.08668110668118 8.37601191995656 8.2323743176548 9.04472667276346 8.26982510029436 8.16650207972941 8.42304030390028 7.73215589587411 0.156515864970467 0.155879745873904 0.158817200630012 0.155896753745349 0.155787709820809 0.162101503234216 0.150478867360930 0.153324012749588 0.188266532226405 0.162603275114484 0.160827143344736 0.151560667609468 0.157756828648192 0.159482091886881 0.166530696052132 0.155799245543481 0.165934767951561 0.160014936334063 0.157253853206416 1 0|1 /|- 5102701 5103898 5103371.875 5102419 5104690 - gene protein_coding_gene FALSE TRUE AT1G14810.1 semialdehyde dehydrogenase family protein encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis similar to Os03g0760700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051347.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL50155.1); contains InterPro domain Aspartate-semialdehyde dehydrogenase; (InterPro:IPR012080); contains InterPro domain Semialdehyde dehydrogenase, NAD - binding; (InterPro:IPR000534); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Aspartate-semialdehyde dehydrogenase, USG-1 related; (InterPro:IPR005986); contains InterPro domain Semialdehyde dehydrogenase, dimerisation region; (InterPro:IPR012280) 0.437290172176005 4.81085514787216 0.00056073281584765 1 5.3113666009667 16.8124133753095 0.437290172176005 0.0679252559832389
AT2G19460_at 4.13887560282959 4.58240164991284 2.93586985737251 3.24392524210997 2.66453327140955 3.48017303450653 4.2169764507199 4.59350743748078 5.44981046758174 4.01081959979274 5.23409787872342 5.63667296029653 4.23938079594492 5.19476058903 4.86761765267061 4.41704633975464 3.77740648308365 4.45762542923657 4.76020533568334 0.232487721218336 0.232062970172031 0.239106114162902 0.240468006673237 0.230388434987996 0.241267815282476 0.240688011643456 0.233627129371301 0.236965186161407 0.236247790370978 0.231001182465672 0.228983629606761 0.239316045187984 0.232475817352970 0.229104234820574 0.240413854417963 0.233521083491662 0.232430248652090 0.235127469823523 2 2 + 8438673 8438908 8438759.182 8438564 8439187 + gene protein_coding_gene FALSE TRUE AT2G19460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11970.1); similar to hypothetical protein MtrDRAFT_AC152551g19v1 [Medicago truncatula] (GB:ABE86249.1) -0.657008692739771 -4.80949644301646 0.000561946889810677 1 5.30953194031882 8.46621006018195 -0.657008692739771 0.181390453761693
AT1G71730_at 7.30243952801226 8.01352424845679 6.68832579490144 7.0226679412587 7.82243844068756 7.61357198235863 8.15407207660891 8.5253475498132 6.94673895569568 7.20357300056205 6.78433507451547 6.73053968070354 6.77464900854013 6.40439906359858 6.97334678833889 6.53082820199701 5.96796654128568 6.74803782110227 7.12980961774842 0.258457657510593 0.252757015753281 0.263164153277207 0.261311511004916 0.252385048364924 0.257206150567174 0.26006733996751 0.256576878047908 0.271201839272489 0.254219806063211 0.251924961822364 0.25413868763944 0.252116452114346 0.262992547437776 0.256376495427955 0.249670796044023 0.265339758547517 0.257778601941565 0.249670796044023 1 1 - 26990090 26990462 26990332.091 26989750 26990571 - gene protein_coding_gene FALSE TRUE AT1G71730.1 similar to late embryogenesis abundant protein [Picea glauca] (GB:AAB01563.1) -0.595602948206528 -4.80555533427478 0.000565484196531774 1 5.30420841837254 14.4966167605183 -0.595602948206528 0.154678038316116
AT1G29280_at 4.03258180092599 4.41055475642398 3.90292721667731 4.18156787295507 4.92268089384935 5.10746929970631 3.06504769110002 3.44039716973435 3.06048243265356 2.76318999834555 2.76217062349831 2.96492069764040 3.79345124460449 3.33856301478209 3.14498307393696 2.51865327005343 3.7027438353255 3.06099034610341 3.02060444859717 0.276777046381621 0.266739523629698 0.265689828046758 0.274210225825028 0.286403949756202 0.296684208314650 0.273188968298187 0.264882439730921 0.269225436791259 0.265902489369409 0.267928191091931 0.270116294779949 0.271368574990436 0.265049944120431 0.266630459099710 0.264882439730921 0.269953617049051 0.270069887766715 0.265180118695956 1 1 + 10236868 10237404 10237152.545 10236353 10237453 + gene protein_coding_gene FALSE TRUE AT1G29280.1 WRKY65 (WRKY DNA-binding protein 65); transcription factor member of WRKY Transcription Factor; Group II-e Identical to Probable WRKY transcription factor 65 (WRKY DNA-binding protein 65) (WRKY65) [Arabidopsis Thaliana] (GB:Q9LP56); similar to WRKY69 (WRKY DNA-binding protein 69), transcription factor [Arabidopsis thaliana] (TAIR:AT3G58710.1); similar to putative WRKY transcription factor [Gossypium hirsutum] (GB:AAT64024.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.502116593147616 4.80486136177787 0.000566109494629693 1 5.30327073974478 7.18735424089246 0.502116593147616 0.108837235119332
AT2G13100_at 7.81568286743307 8.01529264622393 8.13929983918682 7.88582546410516 8.78570199254321 8.13940241765015 7.26864586366732 7.57049509746872 7.10883493004749 6.90510817297311 7.50366240129814 7.47823317872065 7.87663388468789 7.54593277724572 7.12081265362389 7.46047857885777 7.81795970311671 7.74785473048737 7.0770415987356 0.208941268273304 0.205191287899631 0.205811015608718 0.209828399450892 0.210483920373453 0.217564682553315 0.203864614179126 0.199991486714264 0.221298336615272 0.208937760099176 0.200629755408828 0.212159924899859 0.201879062840404 0.204576979146901 0.199226698720780 0.200857499438649 0.238304908520188 0.206026924118779 0.207461633762554 2 2 + 5398128 5398771 5398458.909 5397288 5399011 + gene protein_coding_gene FALSE TRUE AT2G13100.1 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative similar to glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative [Arabidopsis thaliana] (TAIR:AT3G47420.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); similar to Os04g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053515.1); similar to Os06g0179900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056973.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.554323032129557 4.80411836948749 0.000566779770477227 1 5.30226673283438 15.2521803847466 0.554323032129557 0.135481955721704
AT3G24503_at 10.4431973531708 10.5152011952310 10.8840114901897 10.7119066816426 10.6717219015777 9.89167323912002 9.51014044857135 9.2812464924524 9.64910560633838 9.50107557024547 10.4796579652208 10.8720832252064 10.3819437557587 10.3790356132137 10.1048493784276 10.1450690560313 9.07415687050864 9.88051039608585 9.71577450262845 0.117742062448883 0.112588333314418 0.122347926888613 0.116956961215187 0.113059446797783 0.119737813461656 0.118610851452410 0.117124308182471 0.132267073768347 0.118488931571588 0.112588333314418 0.112588333314418 0.114612377611459 0.119068730497367 0.116490678793088 0.112588333314418 0.139744452174604 0.117993076775559 0.116342006310284 3 3 - 8919740 8920662 8920080.727 8919567 8923080 - gene protein_coding_gene FALSE TRUE AT3G24503.1 ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively Identical to Aldehyde dehydrogenase 2C4, cytosolic (EC 1.2.1.3) (ALDH1a) (Protein REDUCED EPIDERMAL FLUORESCENCE1) (ALDH2C4) [Arabidopsis Thaliana] (GB:Q56YU0;GB:Q9LV57); similar to ALDH2B4 (ALDEHYDE DEHYDROGENASE 2), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G48000.1); similar to cytosolic aldehyde dehydrogenase RF2C [Zea mays] (GB:AAL99609.1); similar to aldehyde dehydrogenase [Crocus sativus] (GB:CAD70567.1); similar to cytosolic aldehyde dehydrogenase RF2C [Zea mays] (GB:AAL99608.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.572530005964314 4.8003675406917 0.000570176315679985 1 5.29719674787852 20.1319616047248 0.572530005964314 0.144339725484072
AT3G15640_at 8.2082323534762 8.12407155386717 8.12979469515954 8.31232382278378 7.57325512435362 7.8021763455359 7.08917984602196 7.98850392769633 7.80036896835308 7.22501440054108 8.94030796965254 8.93565034403328 8.10294255593548 8.94986985732313 9.1666384879628 8.44000381990343 8.07271047037557 8.28094069567362 7.41524190963829 0.173307151681029 0.168598032610696 0.180368543033610 0.176652019258190 0.173219124653969 0.177827718517759 0.18503019348611 0.170189295773549 0.184318053099042 0.17985015883739 0.173672539808648 0.177037994561388 0.170915118319873 0.173383026710013 0.181329484637959 0.174890527412496 0.176688789363157 0.173279160177778 0.186450997022541 3 3|0 +|/ 5299283 5301311 5300467.778 5299117 5301752 + gene protein_coding_gene FALSE TRUE AT3G15640.1|AT3G15640.2 cytochrome c oxidase family protein similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT1G80230.1); similar to cytochrome c oxidase family protein-like [Solanum tuberosum] (GB:ABB87114.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) 0.616407587811399 4.79992008982018 0.000570582934361867 1 5.29659176454135 15.9491129342543 0.616407587811399 0.164318902801782
AT2G30710_at 6.1107783479251 6.5248299409011 6.03365816879771 6.25890371946976 7.06331662837465 6.78422106604655 5.96849978527068 5.85681701347087 5.34253138767846 4.78920440207007 5.90882436976988 5.66396419592964 5.33558746349666 5.59762033071279 5.53909752904181 5.70684873165774 5.74602656026007 5.23436118659689 5.02180943430373 0.191831932793041 0.198168775244201 0.191136693857672 0.187996429917229 0.192823250592992 0.200678930659807 0.191689992285051 0.197058231801339 0.191366704422733 0.200637819168752 0.190666056224024 0.194678236218687 0.204293543773566 0.195335433659660 0.200052834527772 0.19333084739283 0.196022029379258 0.197009901034857 0.192906282427074 2 2|0 -|/ 13093309 13094433 13093868.111 13092963 13096338 - gene protein_coding_gene FALSE TRUE AT2G30710.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04830.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE91477.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.480076589181331 4.7991093933642 0.000571320430233618 1 5.29549555931904 11.6464896024240 0.480076589181331 0.0967469452437367
AT1G12290_at 3.40345245898111 3.71865892638799 4.44699728999218 3.71195951598361 3.9432990215249 2.94249389735982 1.81127698596633 1.42894970582348 1.64579659207925 1.87686043086385 2.13718773496268 2.01941873683622 2.17434114403406 2.32345357603254 1.82306889645612 2.32316202334050 2.26750988792492 2.39646971967521 1.87464915818020 0.207413448568812 0.211546992634429 0.207452614811696 0.224080061331917 0.206497440724692 0.209333897814478 0.210326565881574 0.210165463415457 0.215451657101673 0.207429468966372 0.207025606060703 0.207802506188226 0.206299615677489 0.214271712428788 0.217491200703023 0.214236356998694 0.209091703038837 0.217605852499631 0.211856170650083 1 1 - 4178609 4179107 4178905.727 4178591 4181245 - gene protein_coding_gene FALSE TRUE AT1G12290.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance protein At1g12290 [Arabidopsis Thaliana] (GB:P60839;GB:Q9LNB5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G10780.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to RPS5 (RESISTANT TO P. SYRINGAE 5) [Arabidopsis thaliana] (TAIR:AT1G12220.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62353.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62348.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.777288658229377 4.7980754635759 0.000572262462687338 1 5.29409733537969 5.16697523789353 0.777288658229377 0.231364487189854
AT4G16390_at 8.1025530527859 8.61268017560251 8.02632360132022 7.95040152455451 7.6516293273899 7.5774262840419 8.45784163472319 8.3408942956279 7.48671675430096 8.03026910875589 7.16554712178476 8.00633156899434 7.18683737391318 7.33159839952898 8.12312172682368 7.44409097188093 7.26190206152335 6.18169535610004 7.60083496017998 0.209703119745486 0.217201673909305 0.214386706713736 0.210104155555825 0.213825711442623 0.210276683417599 0.219338784790991 0.215226391601099 0.214539752559516 0.206893967794852 0.209057325186666 0.202789806860281 0.210578288546064 0.220121892632558 0.214534620376255 0.210172285324097 0.231617623436744 0.245290794783448 0.204808458823388 4 4 + 9259532 9260088 9259909.909 9257980 9260300 + gene protein_coding_gene FALSE TRUE AT4G16390.1 chloroplastic RNA-binding protein P67, putative similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46580.1); similar to RSP67.2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94642.1); similar to RSP67.2 [Raphanus sativus] (GB:CAC01941.1); similar to 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] (GB:CAC01940.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.472673403600931 -4.79787676488885 0.000572443688401427 1 5.29382860579109 15.6117591604962 -0.472673403600931 0.092414530780715
AT3G54960_at 9.21946183659897 9.45898296510063 9.76819993755314 9.82907884708416 8.77415219679262 8.31013954335413 7.18612514171132 6.89629521986184 6.6606712390663 6.19721071936374 6.21139161308868 6.91453127449116 6.31162972349956 6.17226142664542 6.39537445179076 6.1271663006575 5.99576865258861 6.09269576106432 5.96257495296246 0.265305867480701 0.259176995779408 0.262022608549161 0.264606528703644 0.260084256344315 0.262689222336805 0.259176995779408 0.261327447542381 0.269600782552891 0.261862172088739 0.259176995779408 0.259176995779408 0.261219683433804 0.264974247379985 0.261531961849549 0.259176995779408 0.264558035880327 0.268303118074983 0.262724566860753 3 0|3 /|- 20374542 20375305 20374789.5 20374287 20377817 - gene protein_coding_gene FALSE TRUE AT3G54960.1 ATPDIL1-3 (PDI-LIKE 1-3); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-4 (PDI-LIKE 1-4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G60640.1); similar to protein disulphide isomerase [Elaeis guineensis] (GB:AAO26314.1); similar to Os02g0100100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045579.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792) 0.492146551862621 4.79518647000367 0.000574903376334304 1 5.29018943928741 14.9558484798116 0.492146551862621 0.103888411638064
AT4G15800_at 8.20718563040504 8.48525118730127 8.1341994346855 8.39736627575507 8.07198636383717 7.83265216962827 9.39480374693692 9.76572187095824 9.88145763616522 9.05791795061489 10.1196960265400 9.27509691052675 9.87380233698473 9.86870648698185 8.82013707196776 9.01519210794725 8.56115787212528 9.32704016623424 9.49363679504323 0.159412972676174 0.149204745594305 0.170234812790940 0.158101788520695 0.152499204426089 0.169142279957068 0.156317998705361 0.151322764342184 0.159069419244496 0.153066529498404 0.153758131439594 0.147128279015160 0.146279776764971 0.157008602896190 0.151761715135439 0.146680946108104 0.166129180482903 0.155203023880421 0.150582826575905 4 4 + 8984933 8985244 8985100.455 8984866 8985413 + gene protein_coding_gene FALSE TRUE AT4G15800.1 RALFL33 (RALF-LIKE 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL23 (RALF-LIKE 23) [Arabidopsis thaliana] (TAIR:AT3G16570.1); similar to rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAO27366.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.48712835972575 -4.79399651833300 0.000575994882490514 1 5.28857938375613 17.9537830431157 -0.48712835972575 0.101120558221365
AT1G35290_at 1.17523731959870 1.53030784918686 1.10451895876876 1.03568372491048 0.982240186745829 0.812873193582061 1.08730699247028 1.49777440006729 1.54486202587029 2.16041036862351 1.34129291836866 1.81165755595893 1.25657347908927 1.37225219626861 1.11012237588007 1.08277810802314 0.744796367675399 1.06852663415286 1.84862841825843 0.221580166067486 0.228792792782513 0.223271319880436 0.226842368340641 0.228127845532370 0.226344258599131 0.220829899738811 0.225194270639876 0.226384152572201 0.226953988248794 0.223330129214983 0.229688292225238 0.224617431176764 0.220829899738811 0.223988339558147 0.220829899738811 0.230089120147232 0.223863084465518 0.225336908151315 1 1 - 12947756 12948728 12948196.455 12947522 12948819 - gene protein_coding_gene FALSE TRUE AT1G35290.1 thioesterase family protein similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G35250.1); similar to Thioesterase superfamily [Medicago truncatula] (GB:ABE93263.1); contains InterPro domain Thioesterase superfamily; (InterPro:IPR006683) -0.483313970409644 -4.79095195478003 0.000578797533325735 1 5.28445882602385 2.69064294083854 -0.483313970409644 0.0991079151544368
AT2G37540_at 9.66721099857796 9.70924741106677 10.3302942188300 10.1143419741192 10.2605597371581 10.0723784924106 9.39726766190531 9.109756216028 9.04545061305789 8.45918217649696 8.99292894474315 8.10954537415902 9.18022687504527 9.07328985956757 8.03946655273064 8.71876572078575 9.14695686786733 8.76764735431069 8.29260086822136 0.152137991133812 0.152583468395843 0.151209279865793 0.151145628758163 0.162974244524275 0.151373341104272 0.155843875182008 0.154410434515509 0.160192593840283 0.160062122099932 0.153654346016755 0.170399678925292 0.151145628758163 0.15927790819596 0.162029197035301 0.157378768928323 0.158045565263044 0.171823508392338 0.162228167345396 2 2|0 -|/ 15758786 15759868 15759166 15758646 15761045 - gene protein_coding_gene FALSE TRUE AT2G37540.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G02540.1); similar to putative pod-specific dehydrogenase SAC25 [Brassica napus] (GB:CAB58175.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.439024295730381 4.79047123175141 0.000579241373079577 1 5.28380805940296 18.5089727535503 0.439024295730381 0.070609154013092
AT2G47420_at 6.72415687970575 6.6271867097944 6.1666030412899 6.08305693731573 6.9743569007661 6.68067010384847 6.059077937012 5.9916091180701 6.22901657243612 6.42729430941087 5.51828006086002 5.08915650069112 5.62416366403491 5.13195799470276 5.6598048470174 5.32515047864816 5.37027808541767 5.22936491143583 6.35568422361435 0.273853637441884 0.272655105293082 0.272341773467126 0.272341773467126 0.275427296576738 0.277602591393829 0.272341773467126 0.276128889152912 0.295840647550370 0.282265434998765 0.273393671555456 0.272341773467126 0.272341773467126 0.272424035558226 0.283496172203070 0.272341773467126 0.286664868375852 0.280285444815412 0.276069181133205 2 2 + 19465249 19465583 19465397.545 19464555 19465951 + gene protein_coding_gene FALSE TRUE AT2G47420.1 dimethyladenosine transferase, putative similar to ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] (TAIR:AT5G66360.2); similar to Os10g0183900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064257.1); similar to Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] (GB:CAL55025.1); contains InterPro domain Ribosomal RNA adenine methylase transferase; (InterPro:IPR001737); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain RRNA 16S rRNA dimethylase; (InterPro:IPR011530) -0.421574024654987 -4.78995476583951 0.000579718613526784 1 5.28310886151466 12.2662653383110 -0.421574024654987 0.0566571406181859
AT4G25730_at 6.16484843931579 5.71332873762606 5.30998121958938 4.80193700783008 5.14120217304343 4.86226187909822 5.85701181858359 5.5527554956321 4.31321504645905 4.81230587780667 3.99750007966613 4.77950385836799 4.34478487678138 4.18538916528881 4.66881414213388 4.31869031927559 4.65670997463782 3.99901705131705 4.94251164274003 0.230374869067669 0.231880426523065 0.242566162433213 0.241925114872543 0.235878181116135 0.238381991476136 0.239545171523978 0.236150021653617 0.230374869067669 0.234615695501307 0.230374869067669 0.230374869067669 0.238091610079184 0.246102610910085 0.232337874506845 0.233860852016787 0.233878695216940 0.239853859903534 0.230374869067669 4 4 - 13102934 13103490 13103239.455 13102688 13106789 - gene protein_coding_gene FALSE TRUE AT4G25730.1 FtsJ-like methyltransferase family protein similar to FtsJ-like methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G01230.1); similar to FtsJ-like methyltransferase family protein [Musa acuminata] (GB:ABF69946.1); similar to Ribosomal RNA methyltransferase RrmJ/FtsJ [Medicago truncatula] (GB:ABE88988.1); similar to Ribosomal RNA methyltransferase RrmJ/FtsJ; Spb1, C-terminal [Medicago truncatula] (GB:ABE85944.1); contains InterPro domain Spb1, C-terminal; (InterPro:IPR012920); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ; (InterPro:IPR002877) -0.55684177923372 -4.78760259868961 0.000581897387268619 1 5.27992387606161 9.95448853255758 -0.55684177923372 0.137614757388498
AT1G49600_at 5.42220346662744 5.69127202889114 3.7279207737601 3.98055358834027 3.95662549396106 4.71591035093062 4.1022916153983 5.06423316213475 4.15371626360235 4.35926152210206 3.96135081404739 4.70364572559188 4.29219534711049 3.5387417344711 4.77526793181012 3.91153774984411 3.86468652212724 3.89542956705956 5.42121345656028 0.253217028360205 0.256150680700115 0.253683999737594 0.246437579581629 0.247362048101025 0.257382820157075 0.250872183743885 0.249495523733831 0.262721721719815 0.24563697861087 0.24563697861087 0.247948732719663 0.247225201721861 0.255589218432589 0.249365722836878 0.24563697861087 0.258773714724933 0.248398702317182 0.24563697861087 1 1|0 -|/ 18360923 18362533 18361914.1 18360554 18363818 - gene protein_coding_gene FALSE TRUE AT1G49600.1 ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A); RNA binding similar to ATRBP47B (RNA-BINDING PROTEIN 47B), RNA binding [Arabidopsis thaliana] (TAIR:AT3G19130.1); similar to putative RNA binding protein [Nicotiana tabacum] (GB:AAB92518.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.750810503297695 -4.78701550331762 0.000582442550229553 1 5.27912875964447 8.96391997905344 -0.750810503297695 0.221487408119836
AT1G07570_at 5.66482474207448 5.40096254471781 3.78784391866508 3.87568167533846 5.21180882340464 4.84919547301626 4.64609365813951 5.0568719780201 5.56303177104982 4.57289251359807 5.46516621964594 5.8897350778791 4.60135620913866 4.74740519707752 4.76714161191547 5.07899679980594 4.17894799869242 4.94752577404844 5.43365727079453 0.22197874672049 0.22197874672049 0.227133079466982 0.235606628997063 0.234197162559499 0.229006898454398 0.235562984778832 0.230680472331272 0.231601118027405 0.237917291427884 0.225593096186627 0.229592458438617 0.222741320946369 0.228217556888534 0.224377463864496 0.22197874672049 0.223433063638433 0.230507099970839 0.225208266606743 1 1|0 -|/ 2331393 2331953 2331666.9 2331167 2333681 - gene protein_coding_gene FALSE TRUE AT1G07570.1|AT1G07570.2 APK1A (Arabidopsis protein kinase 1A); kinase Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues Identical to Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1) (APK1A) [Arabidopsis Thaliana] (GB:Q06548;GB:Q9LNY0); similar to APK1B (Arabidopsis protein kinase 1B), kinase [Arabidopsis thaliana] (TAIR:AT2G28930.2); similar to protein kinase [Brassica rapa] (GB:BAD12263.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.495690957793616 -4.78693566829188 0.000582516724767532 1 5.27902063260435 9.88635779142517 -0.495690957793616 0.106335860008681
AT1G33470_at 4.66271331290119 4.95907289810777 4.22869251406804 4.81031691713781 5.31849105635797 4.68107043044847 4.21864047335044 4.40779265570681 3.10401903583180 3.4705036346409 4.01834524588102 4.02660679533169 4.18354618024216 4.70127489039285 4.30885375974541 4.03731176453811 3.42154559413474 4.74870832359022 2.91417499512229 0.289466204739498 0.285903409615882 0.288439574921175 0.286225943533758 0.286379260322711 0.325591121120747 0.296474737196767 0.286231453881554 0.291977931155743 0.293728346146136 0.286218377726347 0.299464762402877 0.287209296618775 0.300416410913224 0.295502313092206 0.291876892288104 0.296890603056651 0.298144012100279 0.292306462598641 1 1 + 12144657 12144950 12144819.375 12144495 12147188 + gene protein_coding_gene FALSE TRUE AT1G33470.1|AT1G33470.2 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G22910.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to Os01g0958500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045454.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.607731370926773 4.78599701090849 0.000583389576991067 1 5.27774924894855 8.33268542780832 0.607731370926773 0.161247535937035
AT1G17700_at 2.55380624543686 2.95854395949055 1.38188739916121 1.35590876644050 1.47739079064373 1.49964938074818 2.56055803948259 2.41768167239250 2.10078293286929 3.16100548104914 3.49905637512615 3.89668505881513 2.9205397047801 3.33529176398195 3.91649802661841 2.69692804783732 3.20791197114525 3.51435846259934 3.94032980803018 0.265039804731539 0.270306030824946 0.269853663640104 0.270465490695924 0.269036711525822 0.266356676232517 0.263429144282403 0.260200366166380 0.27113452615046 0.2653395641751 0.265157350070021 0.26228171438505 0.258268949586088 0.260671105776617 0.270436305100714 0.269405737045535 0.272564876736414 0.264050453948933 0.26597907993013 1 1 + 6089618 6090046 6089844.091 6089510 6090316 + gene protein_coding_gene FALSE TRUE AT1G17700.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G13720.1); similar to prenylated rab acceptor family protein [Thlaspi caerulescens] (GB:AAY18432.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) -0.4439512296194 -4.78526066853401 0.000584075263390478 1 5.27675178668539 5.24606899023076 -0.4439512296194 0.0745133689745522
AT1G01220_at 7.81739492887265 7.43209663382083 7.12785103606455 6.56480757937645 7.15249062770122 7.21975332017114 7.38280734506351 7.49270899159768 7.92870175960107 7.73318559324943 7.45538754929218 7.68669796588044 6.71315686220448 7.1179307007002 7.55111175256948 7.17697030947976 7.23422217209941 7.28123317411367 7.75146639441295 0.172318628834984 0.170529554245987 0.166543419683009 0.172918468197676 0.173207055371636 0.172429998712455 0.176360787010895 0.164564355374212 0.173545105277914 0.169125659910477 0.180798539573547 0.164564355374212 0.169813300757631 0.181738996537570 0.173151447070747 0.164564355374212 0.17061856811827 0.171589334671539 0.164564355374212 1 1|0 +|/ 94880 95437 95144.3 91750 95552 + gene protein_coding_gene FALSE TRUE AT1G01220.1 GHMP kinase-related similar to GHMP kinase-related [Arabidopsis thaliana] (TAIR:AT5G14470.1); similar to Os03g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048749.1); similar to GHMP kinases putative ATP-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93641.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain L-fucokinase; (InterPro:IPR012887); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain GHMP kinase; (InterPro:IPR006204) -0.521194386152843 -4.78314568214032 0.000586049483863324 1 5.27388625965255 14.8145088377736 -0.521194386152843 0.120154702232999
AT3G04920_at 9.31266283806493 9.08546567276443 8.42868772644284 8.42270233550869 9.28594444037616 8.54805233159844 9.81492161626464 9.84377368457781 9.21657942071698 9.30146117686738 9.1521502258669 9.48393370583546 8.87732175919002 8.78400153777697 9.62517011851157 8.5715865792166 8.3150474028591 8.75046271482689 9.07698730289772 0.141733836693242 0.144309034518461 0.148999748478972 0.150085326066343 0.141767129360633 0.149933229995443 0.152648571731805 0.142881382819082 0.143820360814691 0.150095630126529 0.146924153499218 0.147438200711122 0.141733836693242 0.146167299414363 0.144786855234749 0.149358982749643 0.149730929635526 0.147713147578557 0.148325410168498 3 3 + 1360997 1361644 1361377.909 1360888 1362301 + gene protein_coding_gene FALSE TRUE AT3G04920.1 40S ribosomal protein S24 (RPS24A) Identical to 40S ribosomal protein S24-1 (RPS24A) [Arabidopsis Thaliana] (GB:Q9SS17); similar to 40S ribosomal protein S24 (RPS24B) [Arabidopsis thaliana] (TAIR:AT5G28060.1); similar to ribosomal protein S19 (GB:1909359A); contains InterPro domain Ribosomal protein S24e; (InterPro:IPR001976) -0.548121311210002 -4.78198578404126 0.00058713517127962 1 5.27231441757806 18.1644272752020 -0.548121311210002 0.133708844943359
AT1G51160_at 8.16161292845197 7.99938582136136 8.14868777474511 8.04665551394626 8.45527741029208 8.47344214980783 7.90085265247333 7.884907835496 8.0540193830705 7.60099006385923 8.51071687092333 8.28066694096812 8.3354697048404 8.1590901031942 8.42016607758733 8.22353178584439 8.21779802734644 8.42644199309918 7.7982072838052 0.108895518419127 0.108634730510715 0.108728510332994 0.111342779629264 0.107423394621924 0.108760690092280 0.108781079870982 0.107384225095422 0.119040827988298 0.116692876842994 0.107382176823824 0.107287207519017 0.105992398472783 0.108940607281474 0.113167398626362 0.107855367880294 0.126893891507081 0.113504216446495 0.113925421636639 1 1|0 +|/ 18953738 18955183 18954036.444 18953259 18955451 + gene protein_coding_gene FALSE TRUE AT1G51160.1|AT1G51160.2 synbindin, putative similar to synbindin, putative [Arabidopsis thaliana] (TAIR:AT5G02280.1); similar to Sybindin-like protein [Medicago truncatula] (GB:ABE85641.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Sybindin-like protein; (InterPro:IPR007233) 0.399161090241302 4.77878864860309 0.000590138752083347 1 5.26798057995506 16.2035898099319 0.399161090241302 0.0334279671727276
AT1G69980_at 6.18124892590299 6.55339705583374 6.57597389393553 6.46768541872131 6.53640262152221 6.5835231622671 6.37353363423072 6.23382875113444 5.25645376946099 5.41923731481898 6.3472834842164 6.40026849803944 6.14307531079156 5.94634356643274 5.72065358188102 6.2385136778644 6.48678147628856 5.54520185945116 5.61695295991557 0.242108514807323 0.228273606596137 0.228273606596137 0.231134290190049 0.232589354595398 0.240013362957204 0.237344309935582 0.250532056238493 0.257745003321681 0.234415978062292 0.236794763883274 0.228273606596137 0.244489319444989 0.234502732255534 0.241518743905424 0.241851542553253 0.237860227667877 0.230912427348678 0.23752904747575 1 1|0 -|/ 26360262 26361266 26360704.4 26360043 26361330 - gene protein_coding_gene FALSE TRUE AT1G69980.1 similar to Os09g0560400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063926.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45961.1) 0.439014008070774 4.77324322727621 0.000595386957342828 1 5.26045929900225 12.2053974479114 0.439014008070774 0.071762083010175
AT2G42540_at 10.3490727206349 10.1736428521956 6.86570187697483 6.59939758338455 8.13521008606118 8.35806451390537 9.44669420396992 9.58919454461943 3.15716606610781 8.12180400037433 6.50091142510093 7.2043418839738 8.20249021323258 7.81904174230166 6.37701289358717 7.99968104277232 7.10253943302789 6.5005497528265 5.793851117091 0.221007145971782 0.22021363706709 0.224580743173202 0.218856502271865 0.22666171138713 0.214369796377268 0.216747700260118 0.214872796486086 0.259802842879285 0.216001709991348 0.224736852011656 0.212701608604447 0.223493821273040 0.218176079222179 0.217042009510953 0.223437741079433 0.216589999875866 0.223987564095916 0.223482790841868 2 2 - 17718351 17719001 17718747.818 17718115 17719408 - gene protein_coding_gene FALSE TRUE AT2G42540.1|AT2G42540.2 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. similar to cold-responsive protein / cold-regulated protein (cor15b) [Arabidopsis thaliana] (TAIR:AT2G42530.1); similar to COR15a [Arabis pumila] (GB:AAS98217.1); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241); contains domain COLD-REGULATED PROTEIN COR15 (PTHR23241:SF10)|similar to cold-responsive protein / cold-regulated protein (cor15b) [Arabidopsis thaliana] (TAIR:AT2G42530.1); similar to COR15a [Arabis pumila] (GB:AAS98217.1); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241) -0.438838455722496 -4.77224871653384 0.000596333360699874 1 5.25910986902537 15.1417530191568 -0.438838455722496 0.071700634043368
AT1G32090_at 3.11776720131234 3.16557541730244 1.67003691048324 2.2314269440693 3.84737304703284 3.622812328676 1.76000951539148 1.75901488881337 2.18259397639918 1.475778740323 2.75972626905108 2.98420170186946 2.76377452621246 2.72744318352521 2.73363053776975 1.97669847659489 1.80050274920937 2.51281600835393 2.16625392588540 0.212600496975998 0.210480199869223 0.215359836120201 0.207174056622038 0.214485488474009 0.221131203265445 0.213854139528208 0.208299961462889 0.215026984884639 0.222388717741778 0.210683112761319 0.213834492058666 0.216958217480341 0.215563887454699 0.208608931668071 0.213767718564923 0.234032817822302 0.216589132228304 0.211724822328779 1 1 - 11540297 11540856 11540587.909 11540007 11544059 - gene protein_coding_gene FALSE TRUE AT1G32090.1 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G02900.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os10g0579100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065504.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.49156375961559 4.77087806766479 0.000597640308690605 1 5.25724978119685 4.88369772952302 0.49156375961559 0.104962026362814
AT1G72830_at 6.21724419588402 6.17028065285165 5.23006186528221 4.66974011028821 8.46442927691611 7.40674745313369 3.82896818317025 3.50041620402254 2.68656663010993 2.70830867536332 2.63515092750847 2.02341736459587 2.83093752767097 2.80097396091879 2.21724192043260 2.48294560639538 3.4182073484869 2.72641099003261 2.67912835889663 0.302592860447266 0.298908989502578 0.289008972852678 0.297075793533596 0.28717614918631 0.305407679642998 0.283583988035329 0.284523496470353 0.288835834485269 0.287453126014516 0.290125959603251 0.283461356519096 0.283461356519096 0.283461356519096 0.288041752686782 0.286669017499983 0.283632063288971 0.283461356519096 0.283461356519096 1 1|0 -|/ 27409370 27410101 27409682.667 27409118 27411630 - gene protein_coding_gene FALSE TRUE AT1G72830.1|AT1G72830.2|AT1G72830.3 HAP2C (Heme activator protein (yeast) homolog 2C); transcription factor Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. Identical to Nuclear transcription factor Y subunit A-3 (AtNF-YA-3) (Transcriptional activator HAP2C) (NFYA3) [Arabidopsis Thaliana] (GB:Q93ZH2;GB:O23632;GB:Q9SSP3); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT1G17590.3); similar to CCAAT-binding transcription factor, subunit B [Medicago truncatula] (GB:ABE81531.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.73204675919409 4.77017255487864 0.000598314210306853 1 5.25629221155808 8.35260862296616 0.73204675919409 0.214950562380752
AT1G31230_at 9.63134705712203 9.69496693612625 8.4053974153471 8.13726110162826 8.880990092864 8.90854665746719 9.72871020731964 9.66851796825048 8.3447886793251 9.64131090302671 9.2942442796343 9.55316278203982 9.07939930529791 9.51575921696401 8.97718276857353 8.82391467325134 9.11053312298015 9.41958845647626 8.85540905831794 0.122037532936499 0.116112672924222 0.124016639104796 0.133948746426369 0.116215813768414 0.123877882364938 0.116918470291929 0.115336204075881 0.130569119146130 0.118143035470528 0.117538936909248 0.116034296444569 0.114737978460829 0.117623797630644 0.115345069517381 0.115955669152154 0.121364111484476 0.120511556101206 0.127807311123770 1 1 - 11158766 11159502 11159105.364 11158599 11163255 - gene protein_coding_gene FALSE TRUE AT1G31230.1 AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. Identical to Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor (AK-HD 1) (AK-HSDH 1) (Beta-aspartyl phosphate homoserine 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (AKHSDH1) [Arabidopsis Thaliana] (GB:Q9SA18;GB:Q8GWK9;GB:Q9SHF9;GB:Q9SW59); similar to AK-HSDH/AK-HSDH II [Arabidopsis thaliana] (TAIR:AT4G19710.2); similar to Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I [Medicago truncatula] (GB:ABE90460.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05981.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05983.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Bifunctional aspartokinase/homoserine dehydrogenase I; (InterPro:IPR011147); contains InterPro domain Homoserine dehydrogenase, NAD-binding; (InterPro:IPR005106); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -0.411641598307857 -4.76901537696964 0.000599421275831859 1 5.25472142255795 18.2164134907867 -0.411641598307857 0.0490471971574156
AT3G47070_at 12.0871551071501 12.3044013901515 11.9055871191105 11.9624334551076 11.9077792902713 11.7751827739669 13.0158803050187 12.9617483870470 12.9775247863292 12.9079388357591 12.8934322452628 12.8893333145735 12.4765322123722 12.7539320578451 12.7257914693750 12.9258608964879 12.5989977339471 13.0323028940457 12.8137496732779 0.0678595327618375 0.0653027475711621 0.0671706268504629 0.0697160067541906 0.0648395380416126 0.0679623088107976 0.0722155481887798 0.0679149792157439 0.0704803348874545 0.0650815232179316 0.0670708685316314 0.0641941440611446 0.0647674855561262 0.0681363640820809 0.0654524961630579 0.0641941440611446 0.0672691527022645 0.0649080945485605 0.0641941440611446 3 3 - 17348214 17348462 17348355.273 17348050 17348718 - gene protein_coding_gene FALSE TRUE AT3G47070.1 similar to thylakoid soluble phosphoprotein [Spinacia oleracea] (GB:CAD45559.1) -0.408632774930593 -4.76733742499722 0.000601030402494917 1 5.25244330185684 25.0834012875333 -0.408632774930593 0.0460922103371729
AT1G66410_at 11.1211572962798 11.1550987713176 11.2615269093001 11.1206603861733 11.3294940233099 11.1545122293059 10.5930890993167 10.6515864803920 10.3784145081668 10.5569383077573 10.8746408126046 11.2017317012127 11.0013459358120 10.9740687448408 10.6984317130070 10.9218498726976 10.9256218530667 10.6209697441898 10.3585618104206 0.0844432895578926 0.0850694062793174 0.084360461960796 0.0924743503539903 0.088286461053063 0.0879631480279732 0.0858979717499771 0.0836742831570431 0.0936292986296072 0.0902455662073367 0.0880152437730267 0.0831972240946522 0.0851060335382598 0.083940359423104 0.086236922209283 0.0829780206617961 0.086305483254632 0.0847799509209394 0.0918839671414242 1 1 - 24778123 24779413 24778405.909 24777880 24779563 - gene protein_coding_gene FALSE TRUE AT1G66410.1 CAM4 (CALMODULIN 4); calcium ion binding encodes a calmodulin Identical to Calmodulin-1/4 (CaM-1/4) (CAM4) [Arabidopsis Thaliana] (GB:P25854;GB:Q03510;GB:Q9FJ05); similar to CAM1 (CALMODULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G37780.1); similar to Os05g0491100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055907.1); similar to Calmodulin (CaM) (GB:P17928); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.403671573463195 4.76659489909705 0.000601743925500474 1 5.25143503230459 21.715209360738 0.403671573463195 0.0405981862872153
AT3G01800_at 4.71151773501634 4.59491084206401 4.7995618495409 5.10110985839504 3.77391634995619 3.55389021630737 4.66340028412464 5.03658843432933 3.86976522471115 3.2765984943783 2.64347342743408 2.94705455530235 3.00321183703968 3.13151909457374 2.8919994238096 3.00915988518493 2.85369140205017 3.24778799625306 3.24637144690987 0.255001891855961 0.258123077418598 0.258212769618502 0.253672689997662 0.251729550327107 0.24834488515234 0.251483603046629 0.254330733293249 0.247825323712487 0.246860862432440 0.248858305814081 0.246840400708730 0.252721045573619 0.257596350234162 0.254617648794611 0.246665824357585 0.258721138259128 0.249333628091884 0.245360090172415 3 3|0 +|/ 286516 287340 286790 285878 287957 + gene protein_coding_gene FALSE TRUE AT3G01800.1 ribosome recycling factor family protein / ribosome releasing factor family protein similar to ribosome recycling factor, chloroplast, putative / ribosome releasing factor, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT3G63190.1); similar to ribosome recycling factor [Bacillus clausii KSM-K16] (GB:YP_175735.1); similar to Os04g0490400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053163.1); contains InterPro domain Ribosome recycling factor; (InterPro:IPR002661) -0.471371303980431 -4.76568924691436 0.000602615412740616 1 5.25020512419002 7.74447807523625 -0.471371303980431 0.0935470934320375
AT2G35120_at 5.03762884457166 5.29555616752575 4.63937853375687 4.9719873959462 5.32438099842152 4.8450811969857 5.04627341690773 5.26316510107265 5.69367745153001 5.44102874634451 6.77716825374315 7.29044256347651 6.2529392910105 7.3667978622538 7.69949497981167 6.2541871235786 6.6240298947774 6.78872982440768 5.78959390092054 0.214554833105738 0.210481228084465 0.214646834708437 0.216166025509567 0.209121619182161 0.213743353286638 0.206570701179492 0.214800647211138 0.211355151291379 0.21148250461343 0.208093451831102 0.205221334410075 0.214768179904411 0.212138825164824 0.209326133964342 0.205221334410075 0.206647796348078 0.20626858171567 0.210729057589019 2 2|0 -|/ 14813525 14814328 14813945.875 14812718 14814448 - gene protein_coding_gene FALSE TRUE AT2G35120.1 glycine cleavage system H protein, mitochondrial, putative similar to glycine cleavage system H protein, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT1G32470.1); similar to 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula] (GB:ABC75361.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Glycine cleavage H-protein; (InterPro:IPR002930); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) 0.51242075331276 4.76522740286581 0.000603060346565757 1 5.24957786809266 11.3145100020972 0.51242075331276 0.116593832994574
AT1G30270_at 7.18656533741347 7.63413781778042 7.75662340643998 7.96474073010817 8.93292227913301 7.67163825365228 6.81738529560298 5.95932250549625 5.57576031198164 6.26023191605487 6.33574637302955 6.88184585290207 7.3733899748983 6.85330158058466 5.92016870139184 7.17638260907447 7.04450217466925 6.71996837688973 6.73743432477618 0.26517561579638 0.247668613168527 0.271591138918005 0.260468438390473 0.257075684085966 0.254345615632372 0.247378509087684 0.253436502515581 0.260031136144147 0.245462827096038 0.245462827096038 0.251967507631052 0.253450078031287 0.254173200269448 0.259194806719456 0.245462827096038 0.26882257014542 0.253040197098345 0.253351675951105 1 1|0 +|/ 10657257 10658468 10657747.778 10654869 10658993 + gene protein_coding_gene FALSE TRUE AT1G30270.1|AT1G30270.2 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9. similar to CIPK9 (CBL-INTERACTING PROTEIN KINASE 9), kinase [Arabidopsis thaliana] (TAIR:AT1G01140.1); similar to CBL-interacting protein kinase 24 [Populus trichocarpa] (GB:ABJ91230.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95889.1); similar to CBL-interacting protein kinase 25 [Populus trichocarpa] (GB:ABJ91231.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.889574724709587 4.76398788548226 0.000604256193255813 1 5.2478942258359 13.9800696480538 0.889574724709587 0.27746783568452
AT4G24400_at 8.36397522804792 8.5237943829071 9.10148995649233 8.85580657364932 9.22178145571272 8.5167326865905 7.97913419296823 7.97549220051204 7.57675662401209 7.35340692278627 7.91609206817955 7.8681731289102 7.81806180021419 7.90090639297727 7.23050059034896 7.62257564565731 7.93761103146876 8.07344008369366 7.34157937752469 0.195220952462014 0.20068920713311 0.212448914152282 0.208879539884039 0.212060418449899 0.197440945907584 0.202053904752028 0.204492454825363 0.208116566870238 0.204257210151165 0.196975260217077 0.19257025337752 0.205968932795631 0.197361537712113 0.211712158438121 0.196702828798236 0.221384753145338 0.203853461448258 0.204377154704662 4 4|0 +|/ 12619339 12620452 12619878.1 12617266 12620694 + gene protein_coding_gene FALSE TRUE AT4G24400.1|AT4G24400.2 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8); kinase|CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. similar to SOS2 (SALT OVERLY SENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G35410.1); similar to Os01g0536000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043259.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95890.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95976.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to SOS2 (SALT OVERLY SENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G35410.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95890.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.542679725787977 4.76245266100666 0.000605740796902278 1 5.24580855013756 16.1771930350045 0.542679725787977 0.132135992278387
AT4G05150_at 10.7612214227169 10.6999547467615 10.7824659076384 10.8857444069131 11.5488019452696 11.2075946163048 10.8603580254324 10.6445149111630 10.4021586571388 10.1941083808943 10.8284485564108 10.5640763430156 10.9581699826849 10.8689997517326 10.5435103024729 10.6934616531549 10.9606107212054 10.6763789059253 10.1465165700377 0.0778160124579961 0.0741752541880807 0.0783957273397607 0.077960165118386 0.0782645234314861 0.0743656461488668 0.0789335621715907 0.0774844029907329 0.0860531805406619 0.0786078844877578 0.0761308406017833 0.0786424607670739 0.0776890675566902 0.0806457393705073 0.0756920916502909 0.0741752541880807 0.0820497920326564 0.0787100886993032 0.0788867031587187 4 4 + 2662085 2662463 2662269.091 2660336 2662906 + gene protein_coding_gene FALSE TRUE AT4G05150.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01190.1); similar to Octicosapeptide/Phox/Bem1p [Medicago truncatula] (GB:ABD32345.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.43937596678238 4.76025775639938 0.000607870014356412 1 5.24282595052908 21.4284827793244 0.43937596678238 0.0728950010268507
AT1G05120_at 5.0679042195833 4.79645824294418 4.87551783211025 5.13782213470137 5.50212017727116 5.10564411135572 4.29506133240241 4.02326569700286 3.65577077333593 3.84268034119815 3.72056415971757 4.27736384494291 4.04220579557863 4.40173237545446 4.09203656122542 4.18801368574034 4.30992023962611 3.80778381794112 3.69419151015245 0.252542060164957 0.252685864898121 0.259908434192126 0.265708295197737 0.266025090859087 0.257142283592221 0.252996898309886 0.255719537855421 0.261940544172896 0.257066763947172 0.252438547221495 0.254544735809005 0.256616369210194 0.252672091048209 0.252438547221495 0.252438547221495 0.255977300745400 0.255637109340360 0.252438547221495 1 1|0 -|/ 1472147 1473024 1472655 1471513 1476077 - gene protein_coding_gene FALSE TRUE AT1G05120.1 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G02670.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.491837688004625 4.75954041696684 0.000608567596158894 1 5.24185099344967 8.76839093588332 0.491837688004625 0.105769193269820
AT4G25900_at 9.75978809328117 10.1431805341540 10.4871925583013 10.5248925746991 10.3230949241371 9.9641109130876 8.76449276546686 8.88519215226786 8.28165495909447 8.18681875933935 8.01471170254096 8.62261198155744 8.2725340252026 8.68988669190793 7.7909830081539 8.2291217535024 7.90670155406721 8.14112960253573 8.14371404903113 0.242870718079930 0.238579785206707 0.247767321006817 0.240404495694762 0.239394205322002 0.245422037219683 0.236432317641249 0.233207498558592 0.236585166723981 0.241536489036072 0.232152851243022 0.227789598402731 0.229495167204934 0.229946223192565 0.232736553141845 0.228764492585772 0.233149184404378 0.235864240932227 0.23302558913067 4 4|0 +|/ 13162420 13163366 13162910.333 13161355 13163645 + gene protein_coding_gene FALSE TRUE AT4G25900.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G57330.1); similar to Os04g0658000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054126.1); similar to Putative apospory-associated protein C (GB:Q40784); similar to OSIGBa0132E09-OSIGBa0108L24.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67787.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.470528403521166 4.75813212570362 0.00060993955588119 1 5.23993668139735 18.0627543789686 0.470528403521166 0.0934893953831747
AT3G57150_at 6.60655801130372 6.73427797863787 5.74074102247098 5.82008588202085 4.63574261065516 5.13816619534054 5.73859015970335 6.35404171443669 5.21427513445147 6.04685814870921 5.3857515342243 6.37506791159288 5.32416873284456 5.41347330064388 6.09268185129449 5.72468566107037 5.48203384028756 5.25678056077593 5.90714854466034 0.249824898874435 0.24599938534744 0.255926996018708 0.260459294934620 0.246969801850699 0.260571359269438 0.248468269035006 0.247230466336944 0.267024913993262 0.247041939989374 0.246586123234625 0.247839458954902 0.251735075678559 0.252761983800222 0.254215960646437 0.247259986773436 0.24599938534744 0.24907850852266 0.24599938534744 3 3 - 21165327 21165794 21165584.545 21164952 21166988 - gene protein_coding_gene FALSE TRUE AT3G57150.1 NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) Encodes a putative pseudouridine synthase (NAP57). Identical to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (NAP57) [Arabidopsis Thaliana] (GB:Q9LD90;GB:Q42348;GB:Q94AA2); similar to pseudouridylate synthase TruB family protein [Arabidopsis thaliana] (TAIR:AT5G14460.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001187533.1); similar to hypothetical protein DDBDRAFT_0204297 [Dictyostelium discoideum AX4] (GB:XP_640508.1); similar to AAL007Cp [Eremothecium gossypii] (GB:NP_982535.1); contains InterPro domain Pseudouridylate synthase TruB, N-terminal; (InterPro:IPR002501); contains InterPro domain DKCLD; (InterPro:IPR012960); contains InterPro domain Putative rRNA pseudouridine synthase; (InterPro:IPR004802); contains InterPro domain Uncharacterized domain 2; (InterPro:IPR004521); contains InterPro domain PUA; (InterPro:IPR002478) -0.557806611790226 -4.75456075548764 0.000613433436089144 1 5.23508050621762 11.5233209635038 -0.557806611790226 0.139930300933655
AT4G24690_at 11.1498410082264 11.2649032953066 11.6101375009290 11.6411161142381 11.5109563756462 11.4548759577712 10.2093419523372 10.6588405839524 10.6946196475986 10.3848748255592 10.6782649684876 10.4044981519031 10.7889592909906 10.7755027142774 10.2524971480124 10.7236342646843 10.7224584808651 10.7582295942862 10.3329562645392 0.0854162837353462 0.0854287642166336 0.0873618947846837 0.091163513483255 0.0887158404732487 0.089218915594357 0.0867810454230734 0.0857312915576015 0.0898329213621335 0.0892563387073802 0.0833765406423652 0.0865329546783648 0.0845742414000915 0.0893060103325065 0.0874620399619682 0.0832826584619672 0.0934438116049308 0.086910692122146 0.0878252629573545 4 4|0 +|/ 12743535 12744172 12743770.8 12741043 12744543 + gene protein_coding_gene FALSE TRUE AT4G24690.1 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein similar to Os04g0476800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053083.1); similar to Os02g0593700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047302.1); similar to PFE18 protein [Ananas comosus] (GB:AAM28274.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.450364220656554 4.75216354325661 0.000615790468416389 1 5.23181964194442 21.7419128431779 0.450364220656554 0.0810577843504598
AT1G03055_at 2.99037559498742 3.03132021241885 3.33259249837738 3.57605511842856 3.26836078671964 2.96470653432319 7.59332705012068 6.15750460244119 3.42257915886203 4.85288989319819 3.72353299011697 4.22048538879825 4.21697633367298 4.46267623248219 3.58059023422212 5.06354857084595 4.65568531150611 4.25052538256819 4.58183422493892 0.226262306173441 0.223377825438058 0.232823870009717 0.230076066226014 0.228550866116443 0.252432920419072 0.261704640678243 0.248798847914797 0.246381777964013 0.228306032848374 0.238299365959394 0.223223088043801 0.223223088043801 0.228913923489873 0.240522301584577 0.224705136116105 0.231964951965346 0.22684264213615 0.235707420574276 1 1 - 710281 711543 711066.091 710018 711803 - gene protein_coding_gene FALSE TRUE AT1G03055.1|AT1G03055.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64680.1); similar to hypothetical protein LOC_Os11g37650 [Oryza sativa (japonica cultivar-group)] (GB:ABA94460.1) -0.83585916700148 -4.75131182479307 0.000616630208979142 1 5.23066082983487 8.39304045699027 -0.83585916700148 0.257540141117562
AT2G03270_at 6.73715872564987 7.11559116342571 6.31118359732083 6.6464213250421 6.6696487175194 6.94432981753743 6.70250879324488 7.31781985790539 6.72798813005082 6.34797773223799 5.61971978792903 5.54151539330858 5.70280752284841 5.88445766356968 5.33796542008595 5.8538719562892 5.58508171475722 5.68510502702732 6.32022936392557 0.236172969976652 0.226555634762148 0.242144896705252 0.230774472614961 0.232099413630184 0.237494280820229 0.229824021969853 0.226390946604314 0.238120362748218 0.228682597991381 0.232601763862841 0.224899814502281 0.228879683516328 0.227549304976872 0.231992681843551 0.223348730036971 0.234865345812066 0.232086979061373 0.224366238567687 2 2 + 995433 995962 995669.636 993753 996125 + gene protein_coding_gene FALSE TRUE AT2G03270.1 DNA-binding protein, putative similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G35970.1); similar to Os03g0586900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050573.1); similar to AAA ATPase; DEAD/DEAH box helicase, N-terminal [Medicago truncatula] (GB:ABE93776.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Putative DNA helicase; (InterPro:IPR004483) -0.569728309356362 -4.75124279521416 0.000616698320661647 1 5.23056690555114 12.8639397344382 -0.569728309356362 0.145782799483269
AT4G39910_at 8.85146323200481 8.746565468768 8.98560346733864 8.99301086078066 9.4655521914927 9.13562632222621 8.57395653687033 8.62571125169294 8.16005013803444 8.0179317189072 8.54311182772199 8.43434027814559 8.63863105190762 8.75156647813245 8.52532090098626 8.61718931218514 8.6665597457073 7.76658138041473 8.10115921059995 0.121415666777721 0.126696236167205 0.127584304074267 0.121702757658416 0.126137989838052 0.130022088872774 0.125707391354695 0.126102891925438 0.141383415638199 0.140187665701588 0.129089648865934 0.126013269764324 0.128291115668875 0.128665128917986 0.130968355383633 0.124910650468248 0.125655783201848 0.152187499301724 0.133312128123612 4 4 - 18511858 18512522 18512117.455 18511569 18514332 - gene protein_coding_gene FALSE TRUE AT4G39910.1 ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease Encodes a nuclear ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15) (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) (AtUBP3) (UBP3) [Arabidopsis Thaliana] (GB:O24454); similar to ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT2G22310.1); similar to Os04g0452400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052951.1); similar to ubiquitin specific protease 46 [Mus musculus] (GB:NP_808229.1); similar to PREDICTED: similar to ubiquitin specific protease 46 [Rattus norve (GB:XP_214034.4); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.422694843755901 4.75097543415558 0.000616962201462298 1 5.23020311600918 17.2151659886038 0.422694843755901 0.0605908937388525
AT1G75100_at 8.99257369752833 9.08698554172146 9.45089685958502 9.21828215488322 9.47045781821348 9.23279239936848 10.3157459735800 9.94618463262971 10.3729398966152 10.1048920340670 9.47977300044707 9.44698298940575 9.53422776869396 9.75216667098046 9.32931680288843 9.937682647756 9.36753891109865 9.66526467744382 10.2484832173540 0.0968154942050252 0.0903724149753324 0.0970476083826053 0.0897251269212164 0.0898731533804192 0.098774291268297 0.094437308834425 0.0986879943636456 0.0904758261051952 0.0869218482135083 0.090560721632734 0.0892036479125481 0.0897061125632381 0.091419201620926 0.0887181966521832 0.0927021979632495 0.099278214399549 0.0901783106344084 0.092293268480373 1 1|0 -|/ 28194782 28195838 28195339.625 28194604 28197461 - gene protein_coding_gene FALSE TRUE AT1G75100.1 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. similar to AUL1 (auxin-like 1 protein), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G75310.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94473.1); similar to Os03g0198300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049277.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.460125509554235 -4.74953449126521 0.000618386439109793 1 5.22824225637269 19.3673520011560 -0.460125509554235 0.0875738049132573
AT4G03120_at 6.40813869002771 6.2608096478885 6.63511727292197 6.59039034877005 6.83093990179504 6.77746401948264 5.85069668747207 5.97304122340262 6.37446799297249 6.05186296750843 6.40109705557983 6.04936817946081 6.78230544268008 6.33017508755564 6.32490271005379 6.35321827357078 6.51745486085392 6.29573746909129 6.08684386187898 0.213426746786379 0.221224229435466 0.209105784623427 0.214730897704989 0.230189061256369 0.217043703907324 0.230201696968252 0.219404759642139 0.214195975031708 0.219112571107289 0.209183391302195 0.209105784623427 0.215875164980994 0.211585495669431 0.209515583202578 0.209105784623427 0.219442556747337 0.212195471799360 0.214399984956157 4 4|0 +|/ 1385873 1387294 1386907.111 1385660 1387739 + gene protein_coding_gene FALSE TRUE AT4G03120.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G61080.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to Os02g0266100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046503.1); similar to similar to u1 small nuclear ribonucleoprotein C [Solanum lycopersicum] (GB:BAD95791.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690); contains InterPro domain Zinc finger, U1-C type; (InterPro:IPR013085) 0.398015217140252 4.74927717009333 0.000618641141728272 1 5.22789205112455 12.6922450534579 0.398015217140252 0.0352684385295231
AT1G16650_at 4.42452052458402 3.76970594768874 4.09355220389608 3.64919978227230 5.19781051357615 4.75982921177022 3.13049560740277 2.72405142380708 2.90193285460126 2.80805368333576 3.47268150232701 3.505743809524 2.9546583464478 3.54411197136237 3.09347943294138 3.39859134433027 3.045133335299 3.28508083394101 3.13425083127110 0.229412710492576 0.225793831317237 0.227814361857464 0.225793831317237 0.234088392365235 0.229129312322916 0.225793831317237 0.235079418241658 0.238143744379951 0.232856369903281 0.23730530614044 0.225793831317237 0.226859157540902 0.228517177152588 0.241250347782181 0.225793831317237 0.229520487005827 0.236995690183066 0.229613401031859 1 1|0 +|/ 5690300 5691046 5690739 5687936 5691191 + gene protein_coding_gene FALSE TRUE AT1G16650.1 similar to Os12g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067247.1); similar to PREDICTED: similar to CG2906-PB, isoform B [Apis mellifera] (GB:XP_394150.3); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) 0.626130250480134 4.7479259049424 0.000619980473093068 1 5.22605283576797 7.08640274942016 0.626130250480134 0.171599707926526
AT1G18910_at 3.0193038191725 3.12763750911702 2.58944011704930 2.49563597107164 2.16690719759358 1.78514259583025 2.41429951978232 2.09213508400912 2.61234972042496 2.78063480283334 1.54024738321233 2.12562726272319 2.07876534136756 2.37742273348667 2.21218024947272 1.85362762947553 2.19338026183831 2.42725179078203 2.47959368324726 0.233532571527683 0.227781708619155 0.219603546998234 0.221890285722389 0.220179556028976 0.219444275391518 0.216578421162471 0.222598313924652 0.218424057282023 0.221147199286268 0.222696859505032 0.219317519601375 0.220328835225724 0.218521172890778 0.222230049528122 0.218494518467851 0.228717708922130 0.222164728833261 0.21682759377627 1 1|0 -|/ 6532697 6533691 6533248.3 6532555 6533741 - gene protein_coding_gene FALSE TRUE AT1G18910.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G74760.1); similar to Os05g0551000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056245.1); similar to putative zinc finger protein [Zea mays] (GB:AAM95976.1); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.463596208295556 -4.74658299731023 0.000621314550356372 1 5.22422467958236 4.82394051022654 -0.463596208295556 0.0899334204206496
AT1G05680_at 1.83628450986383 1.89490320688673 3.25369790228988 3.07687318326221 2.51482816023769 2.41969746238473 3.21659056518529 3.48482615583658 1.78236208715642 2.10577349161597 1.88306221121107 2.17061928285857 2.61351440037806 2.52299768382023 1.92794262595130 3.17854282700052 2.79433756990073 2.12439975384157 1.42044511269297 0.203668692309792 0.205563297030767 0.216166198225438 0.208794273717588 0.213041357492785 0.203592278026627 0.214825190572913 0.203592278026627 0.206543097885335 0.213228390601667 0.215519161251737 0.203592278026627 0.203592278026627 0.207502498250136 0.206446407497842 0.205179561724181 0.204972251707741 0.209967588233714 0.230805257183739 1 1 - 1703246 1703735 1703543.273 1703091 1704688 - gene protein_coding_gene FALSE TRUE AT1G05680.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.420261607407828 4.74640523122856 0.000621491374268532 1 5.22398265556913 4.79793961400606 0.420261607407828 0.0588648725953944
AT4G16690_at 6.15131558369998 6.33975614501031 7.25645547164563 7.09116878861291 6.81123870120613 5.99469882454854 7.35765200995308 7.38881329155025 6.51596144813488 6.63412399079377 4.87906171131953 4.7625300411478 5.55733310615563 5.08341513585567 3.81166958792159 6.26961209150587 5.6967750054218 5.34755686487857 5.75407669898576 0.21113297248778 0.214462346201035 0.226873418203077 0.218863186230576 0.212387128567879 0.218663943574252 0.216683015983590 0.218256339959717 0.220407309151096 0.21113297248778 0.221607205862157 0.222242491792495 0.217480121880076 0.231882971000126 0.229506265512705 0.21113297248778 0.238790762934682 0.216197551557254 0.219299636349014 4 4|0 -|/ 9392427 9393146 9392657.667 9392169 9393551 - gene protein_coding_gene FALSE TRUE AT4G16690.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G58310.1); similar to hypothetical protein [Capsella rubella] (GB:CAC82615.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.573193498664546 -4.74237413579638 0.00062551538214021 1 5.21849293859427 12.5375781381937 -0.573193498664546 0.147912436937851
AT2G16950_at 8.47165528523315 8.4436586437978 8.69087162232282 8.75882013625885 8.27015045362523 8.06402593523944 8.24333486726679 8.49129865839943 6.97372131836998 6.94823827726923 7.66668143184129 7.74835900874348 7.9577386052456 7.84102265425203 7.35570521008532 8.0697966686899 7.7356713974694 7.86237081717295 7.00968188878063 0.156454596819752 0.156454596819752 0.159799916465470 0.164415572870983 0.160070014461618 0.168044942561343 0.163405540806637 0.159296161481115 0.191033273226642 0.175963282734545 0.159891150304581 0.160849983593901 0.163565364805640 0.162273305490691 0.166748730849911 0.158465556833307 0.165179008107077 0.17293392168478 0.176390420554135 2 2 + 7365926 7367490 7366731.273 7360929 7368284 + gene protein_coding_gene FALSE TRUE AT2G16950.1|AT2G16950.2 protein transporter similar to importin beta-2 subunit family protein [Arabidopsis thaliana] (TAIR:AT2G16960.1); similar to transportin 1 [Homo sapiens] (GB:NP_002261.2); similar to transportin 1 [Bos taurus] (GB:NP_001070008.1); similar to transportin [Homo sapiens] (GB:AAC50723.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.417967284617424 4.74161127178793 0.000626279991409039 1 5.21745371844058 15.8076679764317 0.417967284617424 0.0572322336336117
AT3G11100_at 5.8695423299225 5.66855806585517 6.05026698088286 5.91788900994373 6.95702854669711 6.44871789130878 5.1013800257718 4.73082215646038 5.05595436211184 4.40849737241384 4.8133299792212 4.69615395081681 4.73543439248955 5.07967106120042 4.33521463033284 4.93650269344564 5.15516255719776 4.79586436462428 4.93482043766255 0.206842597367366 0.207935374857289 0.210294403408806 0.202216133898426 0.204380135843340 0.217669280513854 0.203156396527599 0.202216133898426 0.206064851609149 0.206763159202388 0.204815180956069 0.202216133898426 0.208113441928798 0.211255259023850 0.205548884962706 0.202216133898426 0.203981719321311 0.212431065625734 0.204462593611096 3 3 - 3476777 3477138 3476980.636 3476193 3477411 - gene protein_coding_gene FALSE TRUE AT3G11100.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G05550.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.509779637821156 4.74137527375838 0.0006265167288874 1 5.21713220685352 10.6521126730530 0.509779637821156 0.116553499122427
AT2G17720_at 8.49790926651714 8.60731422030605 9.01705279836074 8.98501791198413 8.51871374527109 8.08648763649806 7.14673263438963 6.86459116335635 6.99507506574035 6.41060994232688 6.62059583569005 6.68904180083805 6.25047390270762 6.48134071446853 6.81588669867984 6.30420222832208 6.87766678956584 6.47436941971595 6.11261791678449 0.226832808879105 0.223735881401203 0.223659366341349 0.22441978787681 0.219146068459874 0.231654895027402 0.219146068459874 0.219652018578394 0.237137897938440 0.224272256840868 0.220783015962476 0.219146068459874 0.221651643609044 0.219541539964491 0.232506632985152 0.219146068459874 0.22352194568926 0.241034766041171 0.229065894766523 2 2|0 +|/ 7705281 7706225 7705894.25 7704418 7706650 + gene protein_coding_gene FALSE TRUE AT2G17720.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G35810.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81866.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.465388700342066 4.7394352545306 0.000628466406319398 1 5.214488855621 14.7506264964349 0.465388700342066 0.091476848610373
AT1G36980_at 10.7144781275886 10.7666144660976 11.0116426867606 10.9691109630896 11.2044324499459 11.2024218233852 10.4230009856576 10.4395239793785 10.6863077806341 10.4429173081235 10.9298193093222 10.8095719763983 10.7892447328502 10.7541289396224 10.7063247269008 10.8454739002168 10.7831924550121 10.8687945180033 10.5234297551810 0.090310455321821 0.0882430574292336 0.093297378145039 0.0890637227879674 0.092808063784079 0.0910177425701924 0.0945732839347037 0.0904981297338157 0.0968975711016603 0.0947088308719082 0.0899565339343963 0.0896644595403847 0.0891682244824595 0.0938982110135669 0.0912033524686065 0.0916082158566731 0.0959916501957792 0.0911416640538221 0.0958633273090876 1 1 + 14027537 14029144 14028329.636 14027469 14029382 + gene protein_coding_gene FALSE TRUE AT1G36980.1 similar to salt tolerant protein [Triticum aestivum] (GB:AAY26392.1); similar to Os02g0566900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047175.1); similar to Os09g0453000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063340.1); contains InterPro domain Protein of unknown function UPF0220; (InterPro:IPR007919) 0.385465731462988 4.73794565271117 0.000629967765228348 1 5.21245876935812 21.5222550691231 0.385465731462988 0.0119948196718309
AT2G41420_at 8.82319184284797 8.94955378313095 9.0814429226696 9.30550790073335 9.36849250729658 9.11219256554986 8.65655257454731 8.85359558171596 9.0611192588302 8.58586023945734 9.4096966031258 9.1679041257297 9.17449509027704 9.33862772377486 9.31793443438709 9.36881379734345 8.81541662941901 9.24731623039518 8.62014246786488 0.0923405422364117 0.0901524718278719 0.0865442752134533 0.0891754353852102 0.0879779285980163 0.0937607866469655 0.0888099429044407 0.087239658731896 0.0923012424626184 0.0903860154297904 0.0903130437544092 0.0894037827028047 0.0868562159192513 0.0863925006435785 0.0867122421638808 0.0877797586514716 0.0953403351136876 0.0859325085395675 0.0925957109995244 2 2|0 -|/ 17274559 17274918 17274692.444 17273555 17275102 - gene protein_coding_gene FALSE TRUE AT2G41420.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G49840.1); similar to XYPPX repeat [Medicago truncatula] (GB:ABE79588.1); contains InterPro domain Molluscan rhodopsin C-terminal tail; (InterPro:IPR006030); contains InterPro domain XYPPX repeat; (InterPro:IPR006031) 0.435251892878757 4.73625592539920 0.000631675408021411 1 5.21015547535162 18.0116826604901 0.435251892878757 0.0714965162201725
AT3G07130_at 2.51307338135430 2.22714709339955 2.16135929277612 2.01864885228919 2.12919707820986 2.13046487983050 3.56763288253384 3.47869854913036 3.06211008746197 2.73704442565516 2.81713675957256 3.69740833356988 2.63084548338622 3.04863538959279 2.63917253816410 2.50032672514543 3.04810443469116 2.84534912424967 2.90598911221619 0.189385438748303 0.195743015387830 0.198201759505315 0.192304452926918 0.188935810656325 0.206833912746813 0.192495346016871 0.194538821357389 0.199180650592673 0.196536181685014 0.188355407975262 0.195479055019209 0.188942259479002 0.190684205638891 0.186946992795880 0.192308303646466 0.196909713283159 0.193714760217212 0.194856864544219 3 3 - 2255796 2256468 2256124.273 2255716 2258011 - gene protein_coding_gene FALSE TRUE AT3G07130.1 ATPAP15/PAP15 (purple acid phosphatase 15); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP13/PAP13, acid phosphatase [Arabidopsis thaliana] (TAIR:AT2G32770.3); similar to Metallophosphoesterase; Purple acid phosphatase, N-terminal [Medicago truncatula] (GB:ABE89961.1); similar to phytase [Medicago truncatula] (GB:AAX71115.1); similar to phytase [Glycine max] (GB:AAK49438.1); contains InterPro domain Purple acid phosphatase, N-terminal; (InterPro:IPR008963); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.417531322029696 -4.73446291684154 0.000633492765070458 1 5.20771085190921 5.43082119635259 -0.417531322029696 0.0574038349356779
AT3G51820_at 10.5926774686976 10.4793544562281 10.1556480042158 10.0553906235924 10.3163927498714 10.1552523809326 11.1057716614365 11.1184910220713 10.7703225282706 11.0454400781227 10.7900362645255 10.8423992167553 10.6916654858219 10.6736018538281 10.9327759615898 10.5437519727159 10.5991215159927 10.5463461073852 10.7259569221205 0.089884045528173 0.0845857625513261 0.0882758579643911 0.0848807272558344 0.0878834733260543 0.0878659482466622 0.0871288787640574 0.0912739139660376 0.0983679517697543 0.0858681286425485 0.0848368910819643 0.0845857625513261 0.0845857625513261 0.0845857625513261 0.0878160290090307 0.086940097425184 0.0890533055060451 0.0939752559643324 0.0845857625513261 3 3|0 -|/ 19227280 19228561 19227901.571 19226980 19230034 - gene protein_coding_gene FALSE TRUE AT3G51820.1 ATG4/CHLG/G4 (CHLOROPHYLL SYNTHASE); chlorophyll synthetase Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP. similar to prenyltransferase [Arabidopsis thaliana] (TAIR:AT3G11945.1); similar to chlorophyll synthase [Avena sativa] (GB:CAB85464.1); similar to Os05g0349700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055272.1); contains InterPro domain Chlorophyll synthase, ChlG; (InterPro:IPR011799); contains InterPro domain Bacteriochlorophyll/chlorophyll synthetase; (InterPro:IPR006372); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) -0.399090128983252 -4.73440160868606 0.000633555003153389 1 5.20762725323065 21.2722233659631 -0.399090128983252 0.0383157439441930
AT4G23230_at 4.34303584485853 3.96634774529542 4.79228627558063 4.54041933420118 4.1019193045111 3.58664213860364 1.53070399571196 1.84839764756423 2.65244312382958 2.17498599270182 1.99205595889704 2.32478577197196 2.33731702539720 2.20234684118129 1.67813433186982 1.90194537870735 1.85206576336840 2.15804057006104 2.11879835264836 0.346251357807724 0.348313250100331 0.361099197404318 0.354214306587656 0.352359533397209 0.339258808594389 0.339258808594389 0.339258808594389 0.355239764787602 0.339258808594389 0.355450737269519 0.339258808594389 0.347241521195344 0.339258808594389 0.339258808594389 0.339258808594389 0.355512749596733 0.340526017453411 0.339258808594389 4 4|0 -|/ 12158595 12159239 12158960.2 12157579 12160280 - gene protein_coding_gene FALSE TRUE AT4G23230.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.536811376827558 4.73356021395937 0.000634409811870461 1 5.2064798764952 5.77434184157834 0.536811376827558 0.130856184858322
AT1G78740_at 1.53298037566007 1.70093089442198 1.30017583177180 1.60918585694541 1.49820050816403 1.29018487635778 1.44014635220083 2.13664760306334 2.4982329027793 2.39617355535188 1.50850336020977 1.67546797334356 1.87685698844447 1.39667245437524 1.61481559467016 1.28659291154390 1.25789969487897 1.96087465703166 2.31712514881129 0.282671446505103 0.280407115013012 0.288324277887787 0.284671749850985 0.277749493179037 0.287626672167350 0.282349886591916 0.281589338522504 0.28481761177471 0.285185178401814 0.277749493179037 0.278907372294063 0.286493195939447 0.285119854085722 0.277749493179037 0.277749493179037 0.277749493179037 0.284856151109939 0.279103047050602 1 1 - 29615600 29615818 29615694.286 29615387 29616385 - gene protein_coding_gene FALSE TRUE AT1G78740.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G69630.1); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.554936476347703 -4.73338972456281 0.000634583167409188 1 5.20624737178752 3.55158369896967 -0.554936476347703 0.139744086052736
AT1G68650_at 6.04107475760668 5.61775308585091 5.96405420826399 5.80238241302783 4.04483384918905 4.11918321950841 6.04610949115528 5.71537448254793 4.17772638855718 4.53930485915916 4.14950973058801 4.59693680199493 3.82274933196312 4.20164625287123 4.00548250276233 3.79070334189403 3.77309607433492 5.04034559428993 4.03582556630805 0.21302876907351 0.208384998274016 0.203882527075912 0.211727167070674 0.20422109467628 0.212950489060546 0.203528343973237 0.207444895625386 0.213053739942038 0.206626982369989 0.205281207446499 0.201502452526755 0.201976585052257 0.207215886627012 0.207437206671024 0.201630051304646 0.207775463286477 0.203239889772275 0.204975701955988 1 1|0 +|/ 25779982 25781301 25780648.444 25779404 25781537 + gene protein_coding_gene FALSE TRUE AT1G68650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25520.1); similar to Os08g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061871.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_798718.2); contains InterPro domain Protein of unknown function UPF0016; (InterPro:IPR001727) -0.475429049648515 -4.73261881549324 0.000635367660125611 1 5.20519598214839 9.63060117598314 -0.475429049648515 0.097933113099623
AT1G78070_at 8.7510569177053 8.5730041721137 9.14640235048235 9.02621973423873 9.60556240805556 9.2673060811394 9.9291525109165 9.33909565649155 7.51025390972803 8.07938528590635 8.8179375256396 8.3712663482845 8.88532394882054 8.6509085583884 8.57168466639688 8.81397802425936 8.94418622388978 8.74451483432955 7.79376793600083 0.126102355094223 0.116338135886520 0.119337385284175 0.121868330420814 0.120666828438092 0.121548942138842 0.121153033702685 0.130399765537354 0.142148898130099 0.119660697634060 0.118308932513673 0.123302298214299 0.122204798593504 0.120544564805526 0.116755932538913 0.121361692510477 0.125743305117687 0.131859241803883 0.134550174626096 1 1|0 +|/ 29360218 29362398 29361658.6 29359925 29363883 + gene protein_coding_gene FALSE TRUE AT1G78070.1|AT1G78070.2 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G36070.1); similar to WD domain, G-beta repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85309.1)|similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G36070.1); similar to WD domain, G-beta repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85309.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.521900650772461 4.73151309295199 0.000636494651247869 1 5.20368778247652 17.4644470089576 0.521900650772461 0.123431907779908
AT1G74730_at 10.5123848850724 10.4904991406076 9.90919806362088 9.82015592553167 10.1027207493286 9.9737655569434 11.1085288745283 11.2690070176328 11.5401109213484 11.4672855474041 11.8280538165898 11.830536845076 11.2168181001269 11.6321638532259 11.8799307780300 11.4418861712875 10.8880119764605 11.3525794269758 11.2340789090520 0.0765124215053673 0.0751435798171776 0.0755297352525693 0.0753418733354895 0.0711048790538769 0.0797275782114928 0.0718070664865922 0.0769143338255863 0.077156861829438 0.0711048790538769 0.071993275390639 0.0711048790538769 0.0734328387529463 0.0729188777113226 0.0724287006738235 0.0711048790538769 0.0771847104035257 0.0735272235627182 0.0717667297804069 1 1 + 28082699 28083387 28083174.091 28082518 28083648 + gene protein_coding_gene FALSE TRUE AT1G74730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08050.1); similar to Os12g0575000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067105.1); similar to Os01g0585300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043425.1); contains InterPro domain Protein of unknown function DUF1118; (InterPro:IPR009500) -0.399361205283713 -4.73114016469479 0.000636875227877781 1 5.20317906220317 21.8595689001114 -0.399361205283713 0.0390007641675984
AT1G18720_at 10.1432936763880 10.4688209842315 10.8421274774321 10.9085778225574 10.8589026566500 10.6845640825843 10.1228529224102 10.3246272969814 9.83018174887486 9.77078386368827 9.93669217074865 9.89685392917028 10.1537711520811 10.1182658167764 9.82014682444472 10.1636476172041 10.0805983690004 10.2811166115764 9.61737087513408 0.114713996375022 0.106759410867745 0.111079326080546 0.108736798860099 0.108153837569393 0.113211980618794 0.107885335346486 0.108658250850433 0.116495754595356 0.114553859100376 0.106970636360527 0.107096814290621 0.110818034966538 0.108431603174272 0.107909175355554 0.109399197758059 0.116119116158599 0.112801857015254 0.110377517222024 1 1|0 -|/ 6458086 6459603 6459178.778 6457813 6459743 - gene protein_coding_gene FALSE TRUE AT1G18720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74440.1); similar to YGL010w-like protein [Picea mariana] (GB:AAC32136.1); contains InterPro domain Protein of unknown function DUF962; (InterPro:IPR009305) 0.437792677639679 4.73071136801743 0.000637313115250733 1 5.20259410050209 20.4421368935415 0.437792677639679 0.0737242345765891
AT3G54920_at 6.25642434474206 6.37711081616447 4.33557465342536 4.13368950776495 5.92384599256117 5.63453549166931 5.19680509528754 5.11440644840734 7.17954658657364 6.37175617867542 7.97783534158817 7.39639385908494 6.2965484307244 7.06230204279791 7.50021926366708 6.258598135504 5.02422824459392 6.26606298476915 6.99429582564137 0.255267188934058 0.256558023012203 0.273387212258166 0.263598081982407 0.257635804397067 0.267792563777248 0.260082736956569 0.254186842396504 0.264977823346799 0.254186842396504 0.257568001901015 0.264976619425170 0.261424005841443 0.255041605984845 0.254186842396504 0.254186842396504 0.278531707100295 0.264706376760145 0.254186842396504 3 3|0 +|/ 20358056 20359360 20358760.333 20356073 20359560 + gene protein_coding_gene FALSE TRUE AT3G54920.1 PMR6 (POWDERY MILDEW RESISTANT 6); lyase/ pectate lyase Powdery mildew resistant mutant encodes a pectate lyase-like protein Identical to Probable pectate lyase 13 precursor (EC 4.2.2.2) (Powdery mildew- resistant mutant 6) (Powdery mildew susceptibility protein) (PMR6) [Arabidopsis Thaliana] (GB:Q93Z04;GB:Q9SV40); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G04310.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.427517295292051 -4.72940290832487 0.000638651278002792 1 5.20080890981336 12.1572022444884 -0.427517295292051 0.0660817202921985
AT1G69523_at 5.99875528549593 6.12278478536374 6.13950144193901 5.89902722388342 6.28839031744204 5.80780732595649 8.8242963207899 8.28449599245984 6.9318817063582 7.76792096324966 7.69544359142056 7.50073973604079 7.46867041302663 7.80508777013375 7.42739795665506 8.24110962371435 7.86446107633174 7.07053382640753 7.63047081665412 0.193623619847393 0.192456429958433 0.197301977092105 0.190467768362747 0.194253090025017 0.21266691940467 0.212505264738492 0.203560774165915 0.213207394334498 0.193897655551499 0.191411161948713 0.194149823839107 0.199209126187123 0.190467768362747 0.190467768362747 0.194633746512829 0.205992605113088 0.193654227979282 0.192337023162443 1 1|0 +|/ 26134067 26134758 26134380.111 26133214 26134955 + gene protein_coding_gene FALSE TRUE AT1G69523.1 UbiE/COQ5 methyltransferase family protein similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT1G69526.2); similar to COG0500: SAM-dependent methyltransferases [Nostoc punctiforme PCC 73102] (GB:ZP_00110216.1); similar to Os02g0744100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048100.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.541572757463236 -4.72765971560994 0.000640438646011663 1 5.19843012923105 14.2094348339848 -0.541572757463236 0.133550172809009
AT1G29530_at 7.13745379360883 7.41620281114464 6.866709707216 7.20047305110091 7.6870939830615 7.25564185361694 8.59777201846602 8.49796779718887 8.14948649257083 8.12424692075524 7.99252254841239 7.98438487331355 7.69928262687501 8.08293038044614 8.18978179181805 8.00558686682924 7.28343061786923 7.64450211628537 8.27538539813087 0.183845162131588 0.166548562298062 0.182256437186001 0.165730030065476 0.174195257601626 0.202702959352724 0.180359111076607 0.173664008834546 0.187560590147188 0.181328579724334 0.162742781167054 0.162586921323340 0.172222276784240 0.169429877857168 0.172038211285326 0.162586921323340 0.194906381093582 0.193316864357842 0.172439904769517 1 1 - 10325573 10326138 10325839.556 10324731 10326721 - gene protein_coding_gene FALSE TRUE AT1G29530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34310.3); similar to expressed protein, putative [Medicago truncatula] (GB:ABE81136.1) -0.491303166220553 -4.72605128546132 0.000642092514247661 1 5.1962347770719 15.6040855427005 -0.491303166220553 0.107406988365251
AFFX-r2-At-GAPDH-3_s_at 11.8758272677875 11.9120782189568 12.1276859423161 12.1334165428540 11.6502886312208 11.5629377078357 11.6041526764362 11.9043182913225 10.8767670499671 11.0981653032047 11.7909474930835 12.0069310748933 11.5973119254220 11.8017397513005 11.9151319130449 11.7127099633284 11.4981763903278 11.4457229857019 10.8407181802940 0.0836015031947203 0.0792695105841393 0.0820235965455364 0.0794749103244964 0.0822945296776155 0.0837092598016975 0.080364463681081 0.080095237740165 0.0848713874920295 0.0812424904462847 0.0791337812460202 0.0783527101754956 0.084022724821736 0.0784004378888328 0.0806135135888093 0.0783527101754956 0.0838844558945856 0.083803054361131 0.0834392087309684 NA NA NA NA NA FALSE FALSE 0.413510925873373 4.72565677073772 0.000642498861193288 1 5.19569623359376 23.1761552173210 0.413510925873373 0.0544714265053849
AT2G04480_at 1.91610910939967 1.80945712994120 1.87523597533848 2.24963285782901 1.44631967191671 1.63004852788654 2.16120571447797 2.05226843058645 2.19157584418043 2.27849478947085 1.54117914435996 1.32271843667937 1.46873882606686 1.22457378520075 1.67851192712776 2.04832443589426 1.80769089235010 2.01859962165191 2.54265208426978 0.212225767483744 0.20679785810863 0.210578989111522 0.214515815933664 0.216549837848878 0.213329972434423 0.210817252994559 0.2091024764068 0.223176306114907 0.223877544657235 0.212153678277971 0.20679785810863 0.212341827045875 0.221462970384275 0.220499109385382 0.210897954608021 0.214417609274718 0.212445650945339 0.210223497176151 2 0|2 /|- 1554309 1554737 1554503.1 1554279 1555511 - gene protein_coding_gene FALSE TRUE AT2G04480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35870.1); similar to Os12g0498900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066815.1) -0.441616471749645 -4.72464967241844 0.000643537393994417 1 5.19432134249874 3.8807178636587 -0.441616471749645 0.076843148699777
AT3G06930_at 4.46524849856667 4.20654382642963 4.78105452505706 4.61385369919054 5.46133920485836 5.68948292963297 4.88714786432835 4.72250897592877 4.32242431690876 4.29909803580058 4.36608555626411 4.48600874165266 4.16774757003009 4.51802320209107 5.15702346104398 4.44953180373498 4.61623114798793 5.13036342217854 4.30058345808857 0.230753798205548 0.228720256907032 0.232147508163504 0.222039769485694 0.227628839051120 0.227856911676092 0.223963948131737 0.231617936815346 0.227101708148163 0.221229295361730 0.222125225782006 0.222178099874440 0.221983973837859 0.222581114984746 0.220902703612914 0.219773706262247 0.232750263183184 0.219773706262247 0.224888931903395 3 3 - 2185483 2186424 2185929.182 2185149 2189390 - gene protein_coding_gene FALSE TRUE AT3G06930.1|AT3G06930.2 protein arginine N-methyltransferase family protein similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G49020.1); similar to Os07g0671700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060600.1); similar to ar (GB:CAL25348.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.435039278947501 4.72363426112358 0.000644586290950353 1 5.19293492350555 9.31277017386015 0.435039278947501 0.0721950678258902
AT3G16180_at 6.75692007990979 7.06725549659384 5.21054994360967 4.9779062424186 6.64820649693048 6.30206600270501 3.99587598894337 4.62235843169828 5.62406138225839 4.4825894923394 6.46569174500439 6.64930923897525 5.49953244929893 5.9730587659789 6.71205391575322 6.16890087358226 3.91124709034062 6.23253340133283 4.93418658499952 0.24696156656831 0.242985084631316 0.251788571830312 0.265507436046707 0.24727296934872 0.245834174474164 0.257969228166008 0.25495912998628 0.250391256753293 0.258986550476943 0.248506553185541 0.250123390489662 0.242392704776436 0.249215409743078 0.242622743362396 0.247027990476431 0.263068354121046 0.247586769926939 0.243976066251641 3 3 - 5481548 5482046 5481755.364 5481331 5485100 - gene protein_coding_gene FALSE TRUE AT3G16180.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32298.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.556004060315245 4.72240529440522 0.000645858196859404 1 5.19125668049236 11.180219046134 0.556004060315245 0.140880171607366
AT2G46340_at 8.7196993822457 9.09751025017083 9.4182863064828 9.51604487749946 9.81023985088621 9.40844980067904 10.0829632466643 10.0464699894140 8.15828143004281 8.01878922401403 8.8002952745439 8.67708245392413 9.38719647817927 9.05159907549685 8.57604837417965 9.2166774822989 9.22426064054307 8.71484475759638 8.0073810998952 0.168225672882021 0.163936557068396 0.164412131952465 0.166142686069421 0.170685669344599 0.171236377551962 0.172134079708362 0.165673721295554 0.184666365994436 0.182714681990427 0.169710077621689 0.167047055540098 0.166622771670943 0.168429028459852 0.169852100902815 0.163738427987251 0.171166005314790 0.165972509733897 0.182192673042884 2 2 - 19029716 19032999 19031329.45 19029246 19034440 - gene protein_coding_gene FALSE TRUE AT2G46340.1 SPA1 (SUPPRESSOR OF PHYA-105 1); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. similar to SPA2 (SPA1-RELATED 2), signal transducer [Arabidopsis thaliana] (TAIR:AT4G11110.1); similar to Os05g0571000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056370.1); similar to Os01g0725800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044115.1); similar to hypothetical protein DDBDRAFT_0219336 [Dictyostelium discoideum AX4] (GB:XP_636746.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.473055570437211 4.72237370339293 0.000645890926493899 1 5.19121353720785 18.0212002055449 0.473055570437211 0.0971366776629158
AT3G13226_at 6.50454819445738 6.56789518839568 5.62249376770077 5.95750736682201 6.46553766001095 5.8183168760539 7.06924974933514 6.94299041445418 6.54174226795911 6.40149699037719 6.22866832089637 6.5873077258358 6.14302772127593 6.4913821134386 6.09454200633607 6.1455259858244 6.04570766476065 5.92989963488352 6.45049044055808 0.206124956844895 0.204038644542387 0.21277013886017 0.207098844919448 0.207107992231142 0.217791711469788 0.203566110892660 0.205435072811071 0.230623572869746 0.217470312812620 0.208134634241839 0.201529589031446 0.204412355629936 0.201529589031446 0.208657297670943 0.201529589031446 0.222268040375564 0.213872003914530 0.214481372692189 3 3 - 4264480 4265354 4264751.727 4264307 4266369 - gene protein_coding_gene FALSE TRUE AT3G13226.1 regulatory protein RecX family protein similar to OSJNBa0043A12.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE02802.1); similar to Os04g0667900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054192.1); similar to B0811B10.9 [Oryza sativa (indica cultivar-group)] (GB:CAH68308.1); contains InterPro domain Regulatory protein RecX; (InterPro:IPR003783); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.530762944327698 -4.72222540518985 0.000646044593119087 1 5.19101100666049 12.7049845086310 -0.530762944327698 0.128467082306729
AT4G02010_at 5.58004794004281 5.41490080789124 4.96952049179335 4.55686514365404 4.9587038438635 5.25550752331882 6.44129890300584 5.98816944517313 5.26074007963558 5.73779558211753 5.71755797966763 5.73216346138951 5.46049861803998 5.4560290639598 5.33457626152870 5.44710754251178 5.09151809117226 5.28700665793634 5.66075329034141 0.180966111154752 0.183065426431859 0.183052077827332 0.185469523424341 0.186361665296414 0.181098137253626 0.185214949921115 0.187151780989118 0.202017836114694 0.189865516204645 0.179487840313141 0.183408262139506 0.180560842885589 0.184729407078949 0.183590749641619 0.182722471896934 0.181851581050801 0.194002190627296 0.200126279324125 4 4 + 884442 885136 884832 881183 885399 + gene protein_coding_gene FALSE TRUE AT4G02010.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56890.1); similar to Os01g0253100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042609.1); similar to CMV 1a interacting protein 2 [Nicotiana tabacum] (GB:ABB36644.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.516622065604959 -4.72173882574925 0.000646549057543819 1 5.19034645921116 10.8925785257881 -0.516622065604959 0.121258940015651
AT3G55270_at 6.39226480886998 7.04148542710884 7.00177423404356 7.19331650200822 7.35974909891104 6.9886505875494 5.54389364073096 5.41187244640656 4.53571011024618 5.10626845615414 4.9749095343428 5.11597776978291 5.22741857460762 4.97747236823787 4.75493047095765 5.39382892973135 4.98063553734333 4.33114531821258 5.11442351262674 0.235893542678366 0.236775072045249 0.236131494978352 0.229960374798074 0.225875909267632 0.234060389255763 0.235849653009545 0.242788509699094 0.234880566144289 0.228970173510175 0.233819306186271 0.227711901614182 0.225875909267632 0.232042478725902 0.226810151391944 0.228195888295621 0.228124435714545 0.232129661445616 0.229063915889692 3 3 + 20509519 20510352 20509777.364 20507058 20510996 + gene protein_coding_gene FALSE TRUE AT3G55270.1 MKP1 (MKP1); MAP kinase phosphatase MAP kinase phosphatase (MKP1) similar to MAP kinase phosphatase [Zea mays] (GB:AAK29383.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340) 0.544616322370983 4.71919364808647 0.000649194562028619 1 5.18686970223449 11.5607960961591 0.544616322370983 0.135527277131892
AT1G17210_at 7.88892479090384 8.06206518252671 7.79511236853813 7.77296272067237 8.20711936482582 7.97081554618099 8.27084379510833 8.2132869269223 7.98493208738213 8.23696093602038 7.74628240069945 7.81243841992787 7.80649083202556 7.56015404134422 7.412807789264 7.97946805363374 7.59470699541291 7.69165608314331 8.82354624842432 0.150029107921585 0.144751389703617 0.150436520323475 0.148815149533214 0.140929963102236 0.152050916554244 0.140829522087669 0.146246391601272 0.161095103106945 0.143423732177685 0.143199673176503 0.146138374513737 0.146249519825511 0.157971345604444 0.153123873592707 0.144908623641426 0.170535824867907 0.157864760718363 0.143938955718354 1 1|0 -|/ 5880505 5881232 5880847.4 5880123 5884749 - gene protein_coding_gene FALSE TRUE AT1G17210.1 zinc ion binding similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G48950.1); similar to Os07g0150500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058900.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99224.1); contains InterPro domain Zinc finger, C3HC-like; (InterPro:IPR012935) -0.410128427077596 -4.71919215875501 0.000649196113403138 1 5.18686766745137 16.0471315040633 -0.410128427077596 0.051806823517311
AT3G53100_at 3.55493321085339 3.88420798608623 2.62724704366518 2.30077647538656 2.78525721439295 2.74420221531322 5.19039212573088 4.13777454993237 4.94871336658507 3.92369954959426 4.40083793602792 5.74068629250268 4.46675802877956 4.62611310124453 5.91617477594198 4.62525060369274 3.69462566231628 4.85677976447321 4.8851803726202 0.225806403674699 0.226961841968053 0.242818974316764 0.229523629672385 0.228342391826391 0.232572964626937 0.229311581450028 0.238928880937784 0.242392483389600 0.230425961737677 0.225806403674699 0.228744618273883 0.225806403674699 0.229144160471377 0.246922761522780 0.225806403674699 0.233588592116222 0.225806403674699 0.244568597119934 3 0|3 /|- 19696022 19696927 19696531.8 19695725 19697624 - gene protein_coding_gene FALSE TRUE AT3G53100.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G03820.1); similar to Os03g0683800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050914.1); similar to Os06g0148200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056808.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.68620869496936 -4.71848868372564 0.000649929331051227 1 5.18590650904678 8.0914827027812 -0.68620869496936 0.199177887861246
AT2G23290_at 4.31536575623247 4.11351759873544 4.52206793734990 4.38507301863909 4.70620973014277 4.72634117617062 4.78309943528832 4.84891024662719 6.86326618880743 5.40672523061064 5.62969923165202 5.24267081012143 5.35500771652409 5.43143367600756 4.87635509142603 4.33139948045624 5.03339041150782 5.44032446702481 5.85572993280003 0.232070423838414 0.228829206026707 0.238739056261258 0.225759119695561 0.224712463056655 0.228023478727822 0.231688264432771 0.224750278360638 0.231933901760232 0.224437796189648 0.237416233283065 0.227440692649410 0.222654353728955 0.236418905449123 0.23584634553895 0.226743485007387 0.233993998741442 0.224256737907176 0.228046612908371 2 2 - 9912039 9912512 9912319 9911867 9913000 - gene protein_coding_gene FALSE TRUE AT2G23290.1 AtMYB70 (myb domain protein 70); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB73/MYB73 (myb domain protein 73), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G37260.1); similar to MYB6 [Malus x domestica] (GB:AAZ20429.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.402336150230650 -4.71759330099411 0.000650863832931363 1 5.1846830223277 10.1547942263962 -0.402336150230650 0.0438640234704571
AT3G14350_at 6.29929529386859 6.49056605561729 5.69101648344143 5.35951881165393 6.33412443552266 5.46695526824457 7.83080518810147 7.61356505523272 7.50956297946818 7.661524411647 7.95546581057474 8.4079021063973 7.33543070255312 7.99399280720991 7.91184411276294 6.97199117146855 6.43312704828625 7.68695668681416 7.2401284224598 0.183391440938161 0.173821228765877 0.186423549065741 0.187452123582904 0.181954886819041 0.190980674901654 0.173528208981823 0.174455004565946 0.180111537805174 0.175755866156768 0.184173685398887 0.176079346489140 0.178664186429857 0.177791605344386 0.179878196605488 0.176983374331329 0.185258646038034 0.177186539274479 0.173528208981823 3 3|0 -|/ 4783126 4784044 4783542.9 4782764 4787243 - gene protein_coding_gene FALSE TRUE AT3G14350.1|AT3G14350.2|AT3G14350.3 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G53730.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G22130.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G53730.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.614485306961327 -4.71609498661354 0.000652430777766182 1 5.18263535338168 13.9144778624353 -0.614485306961327 0.168286282485346
AT1G22740_at 7.73054977878359 7.6783152263941 7.14381935653758 6.61267453778163 9.07529704961859 8.44243659596088 6.94100383066179 6.09168613440153 7.87484216589125 6.18091321044602 9.30997622777419 6.96451094290538 7.75231199594764 8.41617371246675 7.89092690081672 6.0505266175916 6.93868222357452 7.53831268839042 6.69045446785475 0.255253398092265 0.252446593909033 0.252446593909033 0.253563108755141 0.267406661892733 0.269912748210314 0.260965830970975 0.252446593909033 0.277728697963592 0.260416867898998 0.253466473801202 0.252446593909033 0.253349897186515 0.254953690529384 0.255422930180077 0.254198679713461 0.268957426509594 0.256230349756095 0.257297293826885 1 0|1 /|+ 8049566 8050434 8050003.625 8049089 8050697 + gene protein_coding_gene FALSE TRUE AT1G22740.1 RAB7 (Ras-related protein 7); GTP binding GTP-binding protein Rab7 Identical to Ras-related protein Rab7 (AtRab75) (RAB7) [Arabidopsis Thaliana] (GB:O04157); similar to AtRABG3a, GTP binding [Arabidopsis thaliana] (TAIR:AT4G09720.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.70022126235024 4.71525875629594 0.000653307040107619 1 5.18149235056624 14.7260132863078 0.70022126235024 0.205250139275619
AT1G55330_at 9.79054364717688 9.8766288459552 7.82173744644834 7.9840252691741 9.1858551784865 9.05517720996177 10.0060772539470 10.1022789738147 11.3971804471333 10.5480239549471 12.723196121405 11.9544215841148 11.6641213257733 11.9584639893832 12.2309844819955 11.1970494990799 10.0779381962111 11.6404162839047 11.2036570040591 0.119738332448007 0.118539591669177 0.156408690492940 0.129735809849774 0.120812299708463 0.126060312551546 0.119398470931763 0.115530420924915 0.119764296942067 0.119696548497817 0.122487003552156 0.120610101286454 0.117937753080392 0.116920561640026 0.121221554120971 0.120405745453965 0.121432895788244 0.119587952612779 0.119342695306341 1 1 - 20652300 20652435 20652355.182 20652131 20652557 - gene protein_coding_gene FALSE TRUE AT1G55330.1 AGP21 (ARABINOGALACTAN PROTEIN 21) Encodes a putative arabinogalactan-protein (AGP21). Identical to Arabinogalactan peptide 21 precursor (AG-peptide 21) (AGP21) [Arabidopsis Thaliana] (GB:Q9C8A4); similar to AGP12 (ARABINOGALACTAN PROTEIN 12) [Arabidopsis thaliana] (TAIR:AT3G13520.1); similar to unknown [Brassica rapa] (GB:ABB97032.1) -0.400489968842769 -4.71082598429778 0.000657972778880093 1 5.17543137552062 20.5930126800939 -0.400489968842769 0.0424176366128793
AT2G01830_at 3.21279623541486 3.14053691939011 2.6695095408271 2.65469186310501 2.84996415341146 2.95512861819611 3.14046368189902 2.98836174228064 2.30576213419919 3.71327851961152 4.16254242606941 4.59716101281226 3.37615197421076 3.96427893724809 5.41502272102497 4.25274824404705 3.92477329084387 4.39805219844666 3.38613986171892 0.223952274319124 0.226602933597649 0.226967869619058 0.230493922771884 0.220082314071007 0.221159190770608 0.220082314071007 0.226173096318488 0.232831726425978 0.220082314071007 0.233058305302532 0.231426639848098 0.220739772379881 0.22261339681374 0.238820887173950 0.227038641264984 0.222750486549872 0.222108131259718 0.220082314071007 2 2 - 363342 364024 363668.455 362982 369706 - gene protein_coding_gene FALSE TRUE AT2G01830.1|AT2G01830.2|AT2G01830.3 WOL (CYTOKININ RESPONSE 1) Histidine kinase: cytokinin-binding receptor that transduces cytokinin signals across the plasma membrane similar to AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) [Arabidopsis thaliana] (TAIR:AT1G27320.1); similar to AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) [Arabidopsis thaliana] (TAIR:AT5G35750.1); similar to cytokinin receptor 1 [Lotus japonicus] (GB:CAL18381.1); similar to CHASE; Lantibiotic regulatory protein [Medicago truncatula] (GB:ABE85723.1); similar to putative histidine kinase [Cucurbita maxima] (GB:CAF31355.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain CHASE; (InterPro:IPR006189); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.39403253894172 4.70876649900887 0.000660152437946794 1 5.17261425640358 6.64963235553109 0.39403253894172 0.0344528918895133
AT3G22460_at 6.24184073238673 5.9931752993139 6.39228793522354 6.22767116646753 7.74886560640398 6.93215226508783 5.26845345077769 4.82243671368904 5.16299443502344 5.27122176930258 2.22446248161313 2.21635577859693 3.4983031072583 3.11024695796882 2.5636726413053 3.48397027908801 4.01792272697813 2.91094304947174 5.99726414475715 0.291675282710623 0.285840009421340 0.294984357115392 0.293229906492177 0.289901384631923 0.288384206708341 0.285112121278149 0.287110797027607 0.286004060471252 0.285112121278149 0.295027469107753 0.301848123542383 0.28818459268799 0.29585086549058 0.294208073792741 0.285112121278149 0.307303272107274 0.307679155418509 0.290124637201205 3 0|3 /|+ 7964688 7965691 7965192.714 7963544 7965914 + gene protein_coding_gene FALSE TRUE AT3G22460.1 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative similar to OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) [Arabidopsis thaliana] (TAIR:AT4G14880.2); similar to Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) (GB:O23733); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926) -0.615078897161064 -4.70658024456152 0.000662474592260111 1 5.16962292542004 10.4435577682418 -0.615078897161064 0.169105913886640
AT1G32330_at 3.97062548353326 4.21588821464514 4.57155127851432 4.27614388474649 4.16157665181086 3.92949393117812 3.48135014212616 3.04838176174429 3.01709846619430 3.10701828685604 3.02931086322947 3.58400747081203 2.84505836242659 3.392441795286 3.22413865298861 3.46578142583746 3.97597045133872 4.03621808974251 2.9347025248564 0.268446823015262 0.256352039053475 0.258148675191231 0.269535907161676 0.256352039053475 0.263296300759025 0.257790704979162 0.258498799193562 0.270284360662272 0.256352039053475 0.256603787523303 0.264842830946095 0.261600987826568 0.256352039053475 0.257549840704199 0.256352039053475 0.256352039053475 0.261396746716516 0.258604272565106 1 1 - 11657353 11657904 11657619.727 11656966 11660356 - gene protein_coding_gene FALSE TRUE AT1G32330.1 ATHSFA1D (Arabidopsis thaliana heat shock transcription factor A1D); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-1d (AtHsfA1d) (Heat shock factor protein 8) (HSF 8) (Heat shock transcription factor 8) (HSTF 8) (HSFA1D) [Arabidopsis Thaliana] (GB:Q9LQM7); similar to HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G17750.1); similar to heat shock transcription factor 1 [Medicago sativa] (GB:ABJ09072.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.490069749519498 4.70572705377106 0.000663383152164037 1 5.16845532613972 7.18873757600062 0.490069749519498 0.107898346820671
AT3G55470_at 6.35659904018116 6.9926732737373 7.40568160293244 7.66307021299537 7.85299096145438 7.01209134225732 4.80435170394222 4.88461193040132 4.82070397657526 3.99972559317233 3.58783188066157 3.73751595960363 4.26802366447656 4.42701347001757 3.24273920973203 4.49465393108178 4.28865899401322 4.0840766181681 4.44755161821504 0.206564350692637 0.207788133666235 0.213959542496321 0.214088122329132 0.211349272268352 0.223700736507556 0.20751160842434 0.211847189610064 0.212744433803517 0.209963650260692 0.209753718658283 0.209042632533086 0.206432903054356 0.219265309975616 0.210342477613343 0.213470209171784 0.214060065665169 0.206514238437083 0.207607572625829 3 3|0 +|/ 20575357 20576882 20576325.8 20575217 20577307 + gene protein_coding_gene FALSE TRUE AT3G55470.1|AT3G55470.2 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63220.1); similar to Os-FIERG2 gene product [Oryza sativa] (GB:AAC04628.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.658776681413069 4.70492059069717 0.000664243159206285 1 5.16735155777513 10.8409960644661 0.658776681413069 0.18833509730044
AT2G26250_at 9.51847610187879 9.59983486985034 9.85055643382703 9.92013166998668 10.6801206222304 10.5165378078043 10.3627528410401 10.2627797913102 10.8440847100331 10.5986644196293 11.5556001296835 11.3519202386601 11.3537230462932 11.1787142408047 11.2659714205959 10.8605702563254 10.7311539390800 11.1871750335962 10.6566764514449 0.0989768575908924 0.101757429748133 0.103582097450764 0.0986697799915993 0.0955475503592185 0.104406859726898 0.0986557990068193 0.099285297826511 0.104299599399840 0.0956703138479603 0.0941040064141068 0.0941040064141068 0.0965428172900423 0.0974319547430632 0.0968613147874526 0.0941040064141068 0.100228432024280 0.0980857252263175 0.0985064356336135 2 2 - 11177890 11178379 11178136.455 11177496 11180220 - gene protein_coding_gene FALSE TRUE AT2G26250.1 FDH (FIDDLEHEAD); acyltransferase epidermis-specific, encodes a putative beta-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. Identical to 3-ketoacyl-CoA synthase 10 (EC 2.3.1.-) (KCS-10) (Very-long-chain fatty acid condensing enzyme 10) (VLCFA condensing enzyme 10) (Protein FIDDLEHEAD) (FDH) [Arabidopsis Thaliana] (GB:Q9LLE8); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to fiddlehead-like protein [Gossypium hirsutum] (GB:AAL67993.1); similar to fiddlehead-like protein [Tropaeolum majus] (GB:AAO47729.1); similar to putative beta-ketoacyl-CoA synthase [Antirrhinum majus] (GB:CAC84082.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.395835371768204 4.69873148051911 0.000670882422119796 1 5.15887704804878 21.0316047998238 0.395835371768204 0.0379987654094444
AT4G26510_at 8.92733707347858 9.17150455920639 9.45841445918618 9.23195178905828 9.71548411671275 9.26721474055933 9.4103494200715 9.1907698834599 8.49065804326952 8.23763899236638 9.31295525945259 9.23733962086271 8.96963794139589 9.07955046222425 8.73090455655404 9.09946157421741 8.57037412523829 8.98920814236768 8.105123977693 0.169690715675791 0.166139826594667 0.175699479678408 0.172033121185898 0.172657534203243 0.181727834422556 0.180553145962211 0.165293573356279 0.201431173279387 0.180158042542471 0.167047187213141 0.168108497555990 0.174184092214667 0.173508217075917 0.180235564245467 0.165293573356279 0.195018999792540 0.183969475520226 0.176406128550714 4 4|0 +|/ 13386691 13387862 13387137.125 13384070 13388297 + gene protein_coding_gene FALSE TRUE AT4G26510.1|AT4G26510.2 uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1) Identical to Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) (UPT1) [Arabidopsis Thaliana] (GB:O65583;GB:Q9SYU2); similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT3G27190.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.3); similar to Phosphoribosyltransferase; AAA ATPase; Phosphoribulokinase/uridine kinase [Medicago truncatula] (GB:ABE83101.1); similar to Os02g0273000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046530.1); similar to Os11g0265000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067657.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764) 0.482073999085592 4.69783607618109 0.000671848727232997 1 5.15765045423089 17.9348712375827 0.482073999085592 0.103841985430538
AT3G06300_at 5.90792772704106 6.2562752899075 5.16150010743027 5.27917482726247 5.18902681909912 4.98138649315262 3.9715572243813 4.05290950797842 3.79241864642317 3.47793248765979 3.97377911415552 4.36088257482739 3.97035630405165 4.25895812440554 4.34516212049015 4.3193650581079 4.17159632592207 4.26489339110084 3.05765380519029 0.273398732134602 0.268109934725146 0.268936489215116 0.266765129354339 0.271849839385746 0.273377633430005 0.263622297561366 0.263130536354763 0.270429604240313 0.275961619205559 0.263957661106564 0.265141618484021 0.261495444571423 0.264545488729955 0.266628808888885 0.261495444571423 0.272658756631529 0.265136063068555 0.269042354233972 3 3|0 +|/ 1908711 1909494 1909177.5 1907588 1909810 + gene protein_coding_gene FALSE TRUE AT3G06300.1 AT-P4H-2 (A. THALIANA P4H ISOFORM 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygen Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G18900.1); similar to Os03g0803500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051610.1); similar to prolyl 4-hydroxylase [Dianthus caryophyllus] (GB:AAT84604.1); similar to Os05g0489100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055890.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain Metridin-like ShK toxin; (InterPro:IPR003582); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.4355302189753 4.69590564179427 0.000673937012031271 1 5.15500552272234 8.92536596939345 0.4355302189753 0.0744187498662285
AT4G34490_at 8.8157171597798 8.90279625065599 8.87009450584055 8.93131865596093 8.54742188751254 8.59444564186774 9.20584179366126 9.46338576529038 8.39537700180614 8.60285046007207 9.82580072559812 9.82394008008736 9.82856881075337 9.57200813878782 9.9796802628012 9.52150806167185 9.6561890514319 9.33689984191963 8.56717153383506 0.101432470263970 0.0996486159941425 0.103318305228591 0.101488940192514 0.104142862246272 0.109147375691766 0.101789767062468 0.101862712596027 0.108585166951549 0.104404564145770 0.102822956162709 0.098325713292508 0.100836059142291 0.103696247829021 0.102151001087062 0.0984209816780722 0.105055622116183 0.106543175853146 0.100999151506674 4 4|0 -|/ 16484956 16486023 16485547.143 16484534 16487423 - gene protein_coding_gene FALSE TRUE AT4G34490.1 ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1) CYCLASE ASSOCIATED PROTEIN similar to adenylyl cyclase associated protein [Gossypium hirsutum] (GB:BAA36585.1); similar to CAP protein [Medicago truncatula] (GB:ABE87946.1); contains InterPro domain Cyclase-associated protein; (InterPro:IPR006599); contains InterPro domain CAP protein; (InterPro:IPR001837) 0.405079818421116 4.69457581495198 0.000675379555929916 1 5.15318312058838 18.0238147260057 0.405079818421116 0.0489078613246908
AT1G27590_at 3.07219646129404 2.83113866248499 3.24226640750578 3.25799798323305 3.52953099263422 3.40958020360076 2.73083445125004 2.35044989072379 2.54728097477896 2.64853168591685 2.96483119391874 2.57048641994004 2.85064848789804 3.02089181450732 2.75454838293513 3.5633585697805 3.05996695594382 2.96026958415312 2.88343981827632 0.242883936079041 0.243262182475364 0.250069183813104 0.250515515246394 0.240167256171175 0.240074244532767 0.239754409962880 0.24498301743266 0.248715394916067 0.247897270698582 0.242184007529173 0.244234427245382 0.254730586918198 0.243985913481786 0.246378862139933 0.243026247224301 0.240832625495842 0.239754409962880 0.246949006320898 1 1|0 +|/ 9592780 9594453 9593622.9 9592115 9594573 + gene protein_coding_gene FALSE TRUE AT1G27590.1 similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G27570.1); similar to Os07g0693900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060734.1); similar to PREDICTED: similar to Symplekin isoform 1 [Bos taurus] (GB:XP_585791.2); similar to PREDICTED: similar to Symplekin [Canis familiaris] (GB:XP_533638.2); contains domain ARM repeat (SSF48371); contains domain SUBFAMILY NOT NAMED (PTHR15245:SF12); contains domain FAMILY NOT NAMED (PTHR15245) 0.444365023391225 4.69449245886498 0.00067547008563076 1 5.15306887871286 5.88360404948682 0.444365023391225 0.0806956236382615
AT3G18890_at 9.04371937106374 8.9480571895381 8.46074874614273 8.39799096179255 8.95532371711328 8.54630985444669 10.3279572376112 10.0181213379796 10.0065193906770 10.1651529100008 10.1293399858847 10.3116214079010 9.84540137850945 10.1136730041411 10.4847373285952 10.1110532023710 9.72391620431402 10.2739604626484 9.978854208111 0.105329235346341 0.103004121918342 0.122991413395663 0.115401058479441 0.104940385834259 0.124065648453961 0.106777997683848 0.103004121918342 0.109476950403281 0.104116371507538 0.103907811328175 0.103449322798130 0.107752502566091 0.105835570330769 0.108399634667892 0.103215272936164 0.109960613267806 0.103712170674753 0.105906722897747 3 0|3 /|+ 6513906 6514559 6514238 6511029 6515000 + gene protein_coding_gene FALSE TRUE AT3G18890.1 catalytic/ coenzyme binding similar to flavin reductase-related [Arabidopsis thaliana] (TAIR:AT2G34460.1); similar to Tic62 protein [Pisum sativum] (GB:CAC87810.2); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.460166547654155 -4.69440379654158 0.000675566392255461 1 5.15294736316605 19.1744727393236 -0.460166547654155 0.0909781165850101
AT1G28530_at 2.3392825432241 2.14688220824618 2.14840140334725 1.76509507886722 2.04533340084749 2.37243510935466 2.7654292284068 2.87254987742781 2.90868401911430 2.87452156564587 2.47879829944861 2.56365099010880 2.21615433513324 1.84190045208942 3.16813040457295 2.53765859805396 2.79509384980154 2.52156501537723 3.22007953596828 0.184549945461753 0.178725131714298 0.184178134532986 0.184525243854461 0.177169515438779 0.174511230318218 0.173229844889224 0.179930314739176 0.185825704845994 0.180441992608012 0.177441775561804 0.175570841733073 0.178032348793217 0.176837139942903 0.183818285516803 0.177446709836035 0.175985396333254 0.176000474829783 0.183546751621157 1 1|0 -|/ 10032132 10033221 10032542 10031983 10035486 - gene protein_coding_gene FALSE TRUE AT1G28530.1|AT1G28530.2 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07831.1) -0.466972881695832 -4.69434814514987 0.000675626849197903 1 5.15287108983078 5.06515812287321 -0.466972881695832 0.095166217897066
AT2G22900_at 3.30620225380655 4.15444424770987 2.36451517514242 2.38434991644975 2.45739340260253 2.35817952422828 4.10705959132382 4.59115438881685 3.18958658063688 4.12010628927972 4.13688709625318 5.50419150300525 4.60268598821239 4.19880888265636 4.49192160065940 4.54026107693329 3.31427574270142 3.89573010048496 4.44260731458885 0.242050336899594 0.234772230925481 0.241873947723819 0.241066521883303 0.25570760865347 0.245516762225232 0.231366096359968 0.233662448735386 0.238739526756200 0.236326142992363 0.232122843410778 0.234635319550954 0.231366096359968 0.248284461939089 0.235771602450328 0.235028403340502 0.234510862664675 0.232242964138744 0.240128789917292 2 2 - 9751439 9752485 9751745.182 9751305 9753372 - gene protein_coding_gene FALSE TRUE AT2G22900.1 galactosyl transferase GMA12/MNN10 family protein Identical to Putative glycosyltransferase 7 (EC 2.4.-.-) (AtGT7) (GT7) [Arabidopsis Thaliana] (GB:O81007); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT4G37690.1); similar to galactomannan galactosyltransferase [Senna occidentalis] (GB:CAI79403.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.615221880890196 -4.69375528862975 0.000676271253410059 1 5.15205851353487 7.34192663435922 -0.615221880890196 0.169919858819574
AT3G02650_at 4.40039395693969 4.81496851874522 4.18630754093764 4.55611842767854 4.0823919433264 3.79212592511648 5.49823155253762 5.2723876372889 4.28388108149039 4.48472029936785 4.03910824591041 4.18442512963347 3.72223648718839 4.1125006353957 4.22484388853105 4.19554124298049 3.99258981459440 4.33922288396929 4.02244073431932 0.217103382456138 0.218386649376727 0.226514685679653 0.221211164391571 0.222591597376071 0.227841044640098 0.238967731999348 0.230702496189827 0.230227632066455 0.217741948678515 0.220961455431873 0.219868844075123 0.222831673804505 0.219794331900609 0.219651932573352 0.220052954160776 0.226404427167942 0.218904160919601 0.218853823652795 3 3 + 569338 569779 569595.182 566278 570110 + gene protein_coding_gene FALSE TRUE AT3G02650.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G62680.1); similar to Os06g0179500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056969.1); similar to pentatricopeptide repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAF36557.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.50231581057344 -4.69372931513652 0.000676299500050463 1 5.15202291255641 8.7578603108636 -0.50231581057344 0.115298050565477
AT1G10490_at 4.59693983113623 4.67141284555013 4.29924642298364 4.25744590477616 4.12135807616737 4.01630332775326 5.46571328995652 4.94438209611493 3.76861339304123 3.87292497324287 3.73550160725280 3.69179659293808 4.00295593839060 3.04563684677635 3.42378295249423 3.44223767450111 4.06848355262943 3.33834560919233 3.6822284058502 0.258755589366798 0.26343799085255 0.256633184988066 0.262219022983958 0.267399587852803 0.274250540751513 0.281870510579761 0.256136299532558 0.267879046226045 0.26066275119777 0.260837802259024 0.265334061753921 0.257861081163809 0.262056865577747 0.261515188783701 0.255232183671753 0.269836705484211 0.261607657690645 0.258583551152593 1 1 + 3458765 3459891 3459228.727 3453229 3460621 + gene protein_coding_gene FALSE TRUE AT1G10490.1 Identical to UPF0202 protein At1g10490 [Arabidopsis Thaliana] (GB:Q9XIK4); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57940.1); similar to DEAD/DEAH box helicase, N-terminal [Medicago truncatula] (GB:ABE87709.1); similar to PREDICTED: similar to N-acetyltransferase-like protein isoform 2 [Canis familiaris] (GB:XP_849122.1); similar to PREDICTED: similar to N-acetyltransferase-like protein isoform 9 [Bos taurus] (GB:XP_881645.1); contains InterPro domain Protein of unknown function DUF699, ATPase putative; (InterPro:IPR007807); contains InterPro domain Domain of unknown function DUF1726; (InterPro:IPR013562) -0.463509955021125 -4.69173750915495 0.000678469332133801 1 5.14929246337378 8.2306909847131 -0.463509955021125 0.0932114616927054
AT1G63850_at 5.5909242743266 6.3939143315461 5.31025546846984 5.39296029940464 6.11643136698704 5.78659675270814 7.22757467956414 7.22295319230984 6.4991306174221 6.5766101803559 6.12392472598641 6.82457348536716 6.26365887475451 6.26136248045165 6.45210059834599 6.5107758653503 5.44117762457686 6.43816765455163 6.36053079394669 0.21833632819622 0.219710088294704 0.226377133662694 0.232175464782761 0.231038339450559 0.231199130288687 0.224602035407844 0.222846958816221 0.232029835472990 0.214603887625515 0.217875484003081 0.213906400112095 0.223545368446223 0.213906400112095 0.218888415710662 0.213906400112095 0.225199671951474 0.219981426387134 0.219734864191482 1 1 + 23701796 23702344 23702086.909 23700625 23702371 + gene protein_coding_gene FALSE TRUE AT1G63850.1 PRLI-interacting factor-related similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT5G60050.1); similar to Os04g0579700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053645.1); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14275.1); contains InterPro domain BTB; (InterPro:IPR000210) -0.573285090556376 -4.69056778313158 0.000679747025082646 1 5.1476886340806 12.5143137261219 -0.573285090556376 0.150909754590218
AT1G22190_at 5.32400129007351 5.51663982690427 6.41267716496743 6.3015956879175 7.61080559760922 6.96187542258508 6.25121480154876 5.9467149250775 5.08133335052685 5.5706358915394 5.44704983583317 4.93170110194039 5.34662082308216 5.4874915165834 4.89802160308825 5.95682723056644 6.42269657363439 5.8059370988646 5.96550844986758 0.236911323648782 0.239519852543530 0.235754168976163 0.229766190051157 0.248637538564568 0.230648168102284 0.237050394117920 0.239670324069162 0.235046275154370 0.244099996242745 0.230110860249749 0.230635696098210 0.235717469740185 0.254952953337377 0.233348956537078 0.229766190051157 0.239083168725418 0.24241566709956 0.240282350332483 1 1 + 7836452 7836989 7836749.455 7835771 7837277 + gene protein_coding_gene FALSE TRUE AT1G22190.1 AP2 domain-containing transcription factor, putative similar to RAP2.4 (related to AP2 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G78080.1); similar to putative AP2-binding protein [Jatropha curcas] (GB:AAZ14831.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.529989874836646 4.69048710917895 0.000679835238728502 1 5.14757801203273 11.8287918163823 0.529989874836646 0.129880868323702
AT2G30590_at 5.89637367497474 6.28493104105288 6.24884619941947 6.54071119190537 6.40841740173906 6.3920604466909 5.45605674071958 5.42467049485409 6.35594114483631 5.27021312617503 6.66950673891686 5.96336091112113 6.10892228010434 6.20376421566981 5.77437787877827 5.35704109158257 5.96186448807961 6.1405873014318 5.64088849493197 0.206877244073826 0.199755270390927 0.220826102674602 0.207919037051584 0.202843249767547 0.203897098815365 0.199116048060761 0.217759966128154 0.21007725032138 0.215934609953491 0.197904211261905 0.202953926027808 0.204091522557147 0.205145429060947 0.209231215148031 0.200903097495705 0.213748885631645 0.204804482413329 0.207931935938351 2 2|0 +|/ 13041514 13042345 13041875.3 13040553 13042670 + gene protein_coding_gene FALSE TRUE AT2G30590.1 WRKY21 (WRKY DNA-binding protein 21); transcription factor Encodes WRKY DNA-binding protein 21 (WRKY21). Identical to Probable WRKY transcription factor 21 (WRKY DNA-binding protein 21) (WRKY21) [Arabidopsis Thaliana] (GB:O04336); similar to WRKY74 (WRKY DNA-binding protein 74), transcription factor [Arabidopsis thaliana] (TAIR:AT5G28650.1); similar to WRKY DNA binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99243.1); similar to Os12g0597700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067197.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.449374006633912 4.69019409464141 0.00068015573954069 1 5.14717621400924 11.9705629165153 0.449374006633912 0.0843212551093356
AT1G06640_at 8.62503330284092 8.70178422424048 7.53553135739157 7.08050015655723 7.98403443624804 7.25052539695152 7.92620881274775 7.84294597741159 8.3894230805825 9.02140454712858 8.75076970522102 8.77627446070608 7.94182202033193 8.39508540658353 8.354340490574 8.45199177084183 8.31058487374559 8.72636168213508 8.98060744263144 0.168177941180005 0.167950381656568 0.180922811742563 0.181945311878339 0.172003848838163 0.178763387423568 0.166980335051856 0.167597052558465 0.183322064039354 0.171084322476521 0.170550078832528 0.168934176326422 0.166191815082314 0.181464229735477 0.176046245239670 0.166996853834017 0.178299940823687 0.168529735430938 0.168103642626092 1 1 + 2033106 2033745 2033446.364 2032337 2034017 + gene protein_coding_gene FALSE TRUE AT1G06640.1|AT1G06640.2 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06650.2); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.572543232351608 -4.6888766793881 0.000681598703358416 1 5.1453695159892 16.4985948704061 -0.572543232351608 0.150658204705245
AT2G34650_at 1.81219003352698 2.00555909517315 1.11924077799239 1.45403337455783 1.74373004351959 1.26438689645959 1.47502635611492 1.23581748740203 0.965203817824122 0.939785764854662 2.36862760812398 3.06400763012634 1.72185494008309 2.67285720629601 2.87616357798381 2.04287206138221 1.77565457947349 1.78666476467434 1.25083126172739 0.225032759700019 0.22408635395578 0.225599420079356 0.226096385741129 0.227619699457377 0.227712133489623 0.224685842069337 0.226500478305440 0.23202554707881 0.234282927046507 0.221033074379170 0.231743609419685 0.222398274621958 0.231307893212854 0.221186515201015 0.223277643039097 0.223695746865612 0.233358303225349 0.227174667225385 2 2 - 14597016 14597541 14597310.091 14596851 14598867 - gene protein_coding_gene FALSE TRUE AT2G34650.1 PID (PINOID); kinase Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G55910.1); similar to putative serine/threonine protein kinase [Brassica rapa] (GB:AAB54117.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.499923522313631 4.68813230801332 0.000682415438453564 1 5.14434855490643 3.18401204683662 0.499923522313631 0.114329872023169
AT4G00960_at 1.76116290328225 2.22102460632560 2.66962722559229 2.63309582433595 2.18404584360803 2.29457073802887 1.21316385215927 1.90267584681513 2.54485148879723 1.78273421123351 2.84487095575262 2.46802734271019 2.68604795570209 2.83399507558438 2.34341958075487 2.85662098959857 2.41487706963996 2.72158574565642 2.26351894153708 0.190522773957956 0.180661696825546 0.192508038527077 0.194266788145903 0.182173836116294 0.188114141126257 0.187284026626277 0.183785195556027 0.189990501285970 0.191902590724261 0.186488880934407 0.181086777984339 0.186259341827714 0.188972730046779 0.183581858775872 0.182675381034871 0.191440535655599 0.183976353878159 0.183632773479207 4 4|0 +|/ 415212 416156 415854.1 414361 416180 + gene protein_coding_gene FALSE TRUE AT4G00960.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00970.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC84518.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC83606.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC83607.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.559986907324003 4.68654504066406 0.00068416045680011 1 5.14217117784316 4.53152858999217 0.559986907324003 0.144834437906740
AT3G61980_at 6.64176949919079 6.78839290411435 7.12749177123152 7.03818779142393 7.18153500587811 7.36214560996444 6.79637691447108 6.69811476237114 5.58721626127608 5.72410724903804 5.98812253366388 5.83941520082368 6.39468810586602 6.31834661148508 5.80911358438763 6.18386502329911 6.32639065566328 5.676340635447 5.81674729663609 0.231991826660421 0.216337831359935 0.229041014388638 0.219803197928077 0.215026383868036 0.224826097787022 0.214363939101366 0.215863456260493 0.227585367214028 0.220120300229760 0.214363939101366 0.214363939101366 0.214363939101366 0.214387885455785 0.223899283952923 0.214363939101366 0.226221771626133 0.2163935494424 0.222929003521156 3 3 - 22967352 22967637 22967504.091 22967114 22967858 - gene protein_coding_gene FALSE TRUE AT3G61980.1 serine protease inhibitor, Kazal-type family protein similar to serine protease inhibitor, Kazal-type family protein [Arabidopsis thaliana] (TAIR:AT4G01575.1); similar to Os01g0811200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044589.1); contains InterPro domain Proteinase inhibitor I1, Kazal; (InterPro:IPR002350) 0.401927441383524 4.68626721122361 0.000684466381556479 1 5.1417900128251 12.8424478970704 0.401927441383524 0.0463545142880077
AT3G25670_at 3.36078182892144 3.61849945144413 3.05993429042315 3.41331451936036 3.03602460396804 3.16463761877316 4.81625543919979 5.24715898397451 4.10898596268872 4.42662224791432 4.79004655702302 4.9892228955506 4.5238252202455 4.91816379165776 4.17233700344836 4.25058733366548 3.85352926556909 4.42115800743751 4.59225869080468 0.232210981726629 0.221769623012525 0.252750366877580 0.233503559143414 0.228770486386158 0.240870476855505 0.223934948078301 0.223831255557023 0.233952175019682 0.222524890250042 0.221407050050859 0.219735774905004 0.220305326114052 0.230521620735020 0.22440147999086 0.224680876750271 0.229355644883183 0.232088060789473 0.227622251748706 3 3 - 9345787 9346330 9346083.273 9345769 9347538 - gene protein_coding_gene FALSE TRUE AT3G25670.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G13230.1); similar to unnamed protein product; contains similarity to elicitor-inducible receptor EIR gene_id:T5M7.12 [Medicago truncatula] (GB:ABE90677.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.489146521115849 -4.6855282777584 0.000685280740795907 1 5.14077617610045 8.14748303857169 -0.489146521115849 0.108558548117602
AT2G17730_at 6.87458915208947 7.83509659754281 6.60336885828292 6.75700789091559 6.69712407528936 6.51257386622267 6.14647920096557 6.82185466799168 5.41844318041418 6.07029429539477 4.28375549975922 4.68106449912101 4.78833140090573 4.58333315992322 4.22334717966015 5.01174583658505 4.56576701719678 4.70228904317113 5.70056977184362 0.233243541091866 0.229009836310306 0.233731206924971 0.225400234453208 0.231628629287408 0.232481644900736 0.228421589798628 0.231638247054635 0.256180566126885 0.224530935748484 0.233606009934259 0.234715933387257 0.24128048321661 0.234560067091772 0.239067898539614 0.228226842968275 0.240419592146264 0.239660422692378 0.234743749070667 2 2|0 +|/ 7711681 7712578 7712172.75 7710938 7712832 + gene protein_coding_gene FALSE TRUE AT2G17730.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2B (NEP1-interacting protein 2) (ATL2B) [Arabidopsis Thaliana] (GB:Q8GT74;GB:Q8GWW3); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G35840.1); similar to Os10g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065202.1); similar to putative NEP1-interacting protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAC79837.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.700900554990157 -4.68525704947180 0.000685579910450012 1 5.1404040197872 11.9483734322081 -0.700900554990157 0.207403708341862
AT2G32390_at 6.22605533806134 6.04161287671656 5.49819302415697 4.84505462713216 5.41867001934161 5.07559723075585 5.7642298232936 5.89427193450991 5.27346180297398 5.55942295523055 4.89851422369468 4.89326335430044 4.79004793164139 5.30234484743618 4.27802114777141 4.89672165538692 5.33441752578397 4.74782338928381 4.74800655828783 0.197823310853446 0.196351450914640 0.20102302873134 0.200688591382494 0.200214968154598 0.197647035225114 0.201934506167418 0.201226103930784 0.211110551740804 0.194921941045134 0.193016485309185 0.193273485652080 0.194811193213441 0.204899916731961 0.206917792777324 0.198009689711758 0.197284086115563 0.199637905360916 0.196594010309824 2 2|0 -|/ 13755710 13756185 13755946 13755545 13759000 - gene protein_coding_gene FALSE TRUE AT2G32390.1|AT2G32390.2 ATGLR3.5 (GLUTAMATE RECEPTOR 6) Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GLR3.5) [Arabidopsis Thaliana] (GB:Q9SW97;GB:Q9ZV67); similar to ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) [Arabidopsis thaliana] (TAIR:AT1G05200.2); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to putative ionotropic glutamate receptor ortholog GLR6 [Oryza sativa (japonica cultivar-group)] (GB:BAD45488.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10393.1); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320)|Identical to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GLR3.5) [Arabidopsis Thaliana] (GB:Q9SW97;GB:Q9ZV67); similar to ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) [Arabidopsis thaliana] (TAIR:AT1G05200.2); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to GLUR2 (Glutamate receptor 2) [Arabidopsis thaliana] (TAIR:AT4G35290.1); similar to putative ionotropic glutamate receptor ortholog GLR6 [Oryza sativa (japonica cultivar-group)] (GB:BAD45488.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10393.1); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.536574973608569 -4.68469363733323 0.000686201804004119 1 5.13963091294648 10.6385979583676 -0.536574973608569 0.13351239385339
AT2G21080_at 5.2890079516768 5.24791878224893 4.51944818103439 4.03434679355985 4.59143720042593 4.71411381294646 4.40795903738402 4.50065951990053 4.53913045190041 4.9701957452783 4.2903603068796 4.68207485388482 4.38009811705915 4.05479334740286 4.84691563762512 4.65528628153676 4.30024765951682 4.41899074631465 5.39132124717662 0.255485904181538 0.24744957805492 0.253986671762758 0.255550563460366 0.247678534089663 0.252255659704185 0.251882822705177 0.260181216798391 0.256799429778582 0.256641720071117 0.25586876724447 0.248958289041611 0.247585328558847 0.247770795714933 0.250846356718710 0.24744957805492 0.250926116065569 0.249977320810881 0.248868776114037 2 2 + 9051435 9052145 9051743.5 9050780 9052421 + gene protein_coding_gene FALSE TRUE AT2G21080.1 similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT3G20300.1); similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55624.1); similar to Os08g0521300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062274.1) -0.454918219242604 -4.68324495935204 0.000687803583119961 1 5.13764280305662 9.37335058501174 -0.454918219242604 0.0883519238047693
AT1G08360_at 11.0337478491283 11.1380208043604 10.5265434073474 10.5552055774672 10.8525412937078 10.6635662120616 11.0514985473323 10.9400096963184 10.6203682298483 10.7527057672027 10.3845203268814 10.5604050842720 10.2799688967435 10.3136666375471 10.7004132571988 10.1238378125909 10.0083000479634 10.0354550880505 10.7430731840321 0.089451758833359 0.0841294941580087 0.0855575216715099 0.0846177087528669 0.0834296549598265 0.093227754724011 0.0841870237877844 0.0865597142019681 0.0896682273955896 0.0853375206278448 0.0879397335081152 0.0853376976040332 0.0854248659562463 0.0862184230652323 0.085204378665158 0.0879511250283922 0.0982576701673939 0.0896151426699138 0.086970865821385 1 1|0 +|/ 2636828 2637651 2637425.7 2636027 2637912 + gene protein_coding_gene FALSE TRUE AT1G08360.1 60S ribosomal protein L10A (RPL10aA) Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046690.1); similar to Ribosomal protein L1 [Medicago truncatula] (GB:ABE94025.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.397958300713611 -4.68191621699167 0.000689276215055643 1 5.13581896827584 21.3482433172656 -0.397958300713611 0.0423314893867899
AT3G09830_at 7.72617245069733 7.66163799326143 8.24728103294724 8.0713924944103 7.28312040062177 7.08317688472927 6.0396810954694 5.93638110080904 7.0703333338761 6.15183037056537 6.21311737121401 6.48359494201568 5.76137099064971 6.53594449059345 5.78142390578679 6.18935775409964 6.3577877188095 6.63944445174086 5.5700261648246 0.218703623096273 0.228395613772748 0.222485525109268 0.230815218686131 0.228059096800195 0.226443528070918 0.223907004703335 0.217237354250492 0.22058902316589 0.219711055530429 0.228059180415805 0.219974424433623 0.230174170057503 0.219276594442191 0.220775243666323 0.217237354250492 0.238226312193205 0.223513774529714 0.221982256233168 3 3 + 3018077 3018575 3018337 3016499 3018988 + gene protein_coding_gene FALSE TRUE AT3G09830.1|AT3G09830.2 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G03320.1); similar to Os02g0819600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048536.1); similar to protein serine/threonine kinase [Lophopyrum elongatum] (GB:AAF43496.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.405733228238096 4.68184464278747 0.00068935563425797 1 5.13572071667338 13.5107646780528 0.405733228238096 0.0506757046807802
AT1G67590_at 4.94929235256016 4.31540587103189 4.56235246266098 4.70762562526597 4.55610952499468 4.76014530594425 5.77149442986721 5.70193509560162 5.49011869770906 5.74418076685879 4.66298160120497 4.79017572669422 5.53176012072142 5.59127043591431 4.9824367471508 5.33096097105536 5.76692421478824 5.08077183028425 5.8457028330738 0.194974119388227 0.187333346039634 0.201702173680091 0.189958938370166 0.198960108518844 0.189585364241818 0.198424640433218 0.189567394272735 0.194168789952677 0.19107110627636 0.201553601441391 0.188026456315327 0.187333346039634 0.187448851779192 0.194956912126791 0.189254419233001 0.187333346039634 0.187333346039634 0.195662022215274 1 1 - 25336847 25337656 25337426.909 25336721 25338310 - gene protein_coding_gene FALSE TRUE AT1G67590.1|AT1G67590.2 remorin family protein|DNA binding similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT2G02170.2); similar to Os02g0116800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045682.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15296.1); similar to Remorin, C-terminal re (GB:ABF93690.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) -0.50707380039297 -4.68117860550731 0.000690095135971565 1 5.13480638897266 10.3707922360861 -0.50707380039297 0.118562712368904
AT1G01250_at 4.61313095665318 4.3293088642172 5.66525149553568 5.55666134068515 5.14421290778433 5.25371579741294 6.58732746623997 7.38336557793852 2.5543903506231 4.18890598407192 4.00574680831315 4.02937843265877 5.77412426417084 4.52645222572031 4.53851678268253 4.63804427786023 6.67300225171403 5.09778692696395 3.61416040689728 0.228901832481253 0.232276413440798 0.232074341212793 0.228901832481253 0.232184096316024 0.243028852261102 0.235604401957267 0.234740116286528 0.232554369517394 0.235112391337741 0.228901832481253 0.234230795207741 0.238033233204842 0.235928036612558 0.234422766319324 0.228901832481253 0.237391756175885 0.230457474544411 0.244147783481934 1 1 - 104769 105175 104986.364 104491 105330 - gene protein_coding_gene FALSE TRUE AT1G01250.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to TNY (TINY), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G25810.1); similar to Os04g0549700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053486.1); similar to HvCBF7 [Hordeum vulgare subsp. vulgare] (GB:AAX23704.1); similar to OSIGBa0134H18.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67502.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.567286542411008 4.68033576462624 0.000691032141013955 1 5.13364923727475 9.74805533920399 0.567286542411008 0.148667388999900
AT1G09900_at 5.47047449287907 6.09766597139267 5.17464548716693 5.17342108556377 6.08599295014836 6.01346741611713 6.53017466926339 6.04596505364755 4.37080039494239 5.05112865848521 3.21722258863605 4.60691133615623 4.11793145490684 3.70505105546163 4.88685205451488 4.22276224236192 4.65915018098368 3.80562810129267 5.02799061022258 0.251319306604685 0.243161021652413 0.241316271781399 0.239371683921303 0.240688069670129 0.247431164964222 0.248924873645601 0.247144203549484 0.262869258394130 0.238801245421150 0.263768056553585 0.238801245421150 0.246032367418288 0.241087901810060 0.247070682058259 0.245621364548989 0.248804345137477 0.245053327875835 0.245042768959714 1 1 + 3219344 3219742 3219563 3218135 3219931 + gene protein_coding_gene FALSE TRUE AT1G09900.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04760.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15828.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.544069786570392 -4.67640105229291 0.00069542421607512 1 5.12824556990606 10.3086401481087 -0.544069786570392 0.137694274500823
AT1G79750_at 8.77058542967504 8.75437086905108 8.15831678284356 8.35543099511625 8.15042406198858 8.2268642748688 8.72226563233905 9.12915306533357 8.88013836513426 9.10569271520736 9.27589002929663 9.1651132127712 8.69744474957515 8.4293581431928 8.80459858271151 8.8973848030086 8.0899595030738 8.51780085915368 8.99693855050606 0.154322307950890 0.156219461356335 0.157086844922069 0.153324079576465 0.151406332065377 0.153346498190501 0.153857163113061 0.157006501396772 0.179689941359418 0.14489358408801 0.14489358408801 0.147540283559886 0.150729656282730 0.155344842831108 0.151624176524247 0.14489358408801 0.189065142104104 0.156603806394210 0.151901442689422 1 1|0 -|/ 30012557 30013270 30012890.5 30012219 30016282 - gene protein_coding_gene FALSE TRUE AT1G79750.1 ATNADP-ME4 (NADP-MALIC ENZYME 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed. similar to ATNADP-ME3 (NADP-MALIC ENZYME 3), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G25880.1); similar to ATNADP-ME2 (NADP-MALIC ENZYME 2), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G11670.1); similar to ATNADP-ME1 (NADP-MALIC ENZYME 1), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT2G19900.1); similar to malate dehydrogenase [Vitis vinifera] (GB:AAB08874.1); similar to NADP-dependent malic protein [Ricinus communis] (GB:AAF73006.1); similar to NADP-malic enzyme [Lycopersicon esculentum] (GB:AAB58727.1); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) -0.440448764331684 -4.67302688130415 0.00069921401496988 1 5.12360957622858 17.3979015283839 -0.440448764331684 0.0794012466480382
AT1G07210_at 4.64849808988039 5.18809686701857 4.27779196997750 4.24745949090511 4.58550517250305 4.44990005029783 5.31160916190663 6.06068441497774 3.88576945290517 4.65475190752974 3.7873100524361 4.10837393870794 4.17023518418860 3.71995171465117 4.13644608136736 4.22284977929396 3.6755599803068 3.92136784073499 4.19095232366867 0.204016949814031 0.200457958478051 0.197562903049145 0.196961265625187 0.196883776441438 0.194299556323598 0.191866640209285 0.204359743292352 0.198238600266294 0.196303100869614 0.191866640209285 0.200684506875831 0.194647975743543 0.202575683090537 0.191866640209285 0.191866640209285 0.194589413552602 0.201643036088915 0.194827965274534 1 1|0 +|/ 2215596 2216537 2215899 2215222 2216981 + gene protein_coding_gene FALSE TRUE AT1G07210.1 30S ribosomal protein S18 family similar to Mitochondrial/chloroplast ribosomal protein S18 (ISS) [Ostreococcus tauri] (GB:CAL56850.1); similar to Os10g0500500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064980.1); similar to Ribosomal protein S18 [Psychroflexus torquis ATCC 700755] (GB:ZP_01257753.1); contains InterPro domain Ribosomal protein S18; (InterPro:IPR001648) -0.594060351215974 -4.67293063777099 0.000699322432307292 1 5.12347731204221 8.95198634359772 -0.594060351215974 0.161562019747324
AT1G22590_at 5.85112524990716 5.71466563696495 4.66914211718165 4.58549894530088 5.61962333978846 5.37788282966573 6.73964212968282 6.63545839857614 6.53260274545145 6.86910059007076 6.86129058210236 7.17915519933806 7.20326935681815 7.17685107961877 6.69130531327388 7.28314514431267 6.74539847176996 6.42163932061294 6.36335878308547 0.202145440061683 0.198849033871368 0.211157305685925 0.208734600792954 0.202603436432531 0.203862327121726 0.210445774854050 0.199923176178212 0.203408487252826 0.199188642873083 0.195419432093243 0.197157931216713 0.193549380598571 0.195177690812200 0.202118580328524 0.197946718237790 0.218707735178752 0.201133279885051 0.194671094262118 1 0|1 /|+ 7982039 7983959 7983186.625 7981729 7984323 + gene protein_coding_gene FALSE TRUE AT1G22590.1|AT1G22590.2 MADS-box family protein contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF14)|similar to AGL80/FEM111 (AGAMOUS-LIKE80), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G48670.1); similar to putative MADS-box protein AGL35 [Oryza sativa (japonica cultivar-group)] (GB:BAD81343.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.407641638426816 -4.67259851573952 0.000699696700326372 1 5.12302087581177 12.4159352548918 -0.407641638426816 0.0533137943772553
AT2G16740_at 9.24987228341637 9.35689852183998 9.90356108385834 9.95089471810931 10.0065068763485 9.69608239058783 9.5237956102689 9.82935909327994 9.20027838146374 9.46674812070238 10.0374642778178 9.82984745142546 9.80187236085116 9.75537250962533 9.42578858897333 9.79327289681121 9.74547988603567 9.7096659892636 9.18737498869378 0.144875390780057 0.135264293689217 0.15383378293766 0.147219077266352 0.137944188194607 0.142286917803516 0.141991201612811 0.138557591366915 0.143948717670453 0.135471281892457 0.141682787245913 0.138071528021566 0.141922890776030 0.136146839223683 0.149710260221476 0.135264293689217 0.145949944240838 0.144502983504076 0.145335515658974 2 2|0 +|/ 7275000 7275794 7275362.875 7274804 7276024 + gene protein_coding_gene FALSE TRUE AT2G16740.1 UBC29 (ubiquitin-conjugating enzyme 27); ubiquitin-protein ligase similar to UBC10 (ubiquitin-conjugating enzyme 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to Os04g0667800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054191.1); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.438412444085926 4.67199190062324 0.000700380839088899 1 5.12218715368343 19.2131943182405 0.438412444085926 0.0780527359077298
AT1G76050_at 7.33257767900613 6.84382096832863 6.59219511168654 6.20146246458264 6.73055480087498 6.86562367761176 7.25440153066478 7.2457663359598 6.93611191900054 6.93059678680274 6.25100891855757 6.14846560286736 6.55716446870205 6.75980800463034 6.78331433859949 6.49522229969388 6.77959075951796 6.56110152519967 6.99200918515021 0.165159355755786 0.160852144927479 0.163463910112170 0.166601503246210 0.174833927854259 0.162307623437745 0.175340982302718 0.169566424365883 0.169627150859020 0.161605229675887 0.167318521446712 0.161872574958917 0.160889262660569 0.163294929280561 0.158661462680002 0.166264234998160 0.172340801847122 0.176968891789357 0.165886285376692 1 1|0 +|/ 28546710 28547665 28547294.222 28545717 28548121 + gene protein_coding_gene FALSE TRUE AT1G76050.1|AT1G76050.2 pseudouridine synthase family protein similar to Pseudouridine synthase, RluD [Medicago truncatula] (GB:ABE81887.1); contains InterPro domain Pseudouridine synthase, Rlu; (InterPro:IPR006224); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145); contains InterPro domain RNA-binding S4; (InterPro:IPR002942)|similar to pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G52260.2); similar to Pseudouridine synthase, RluD [Medicago truncatula] (GB:ABE81887.1); contains InterPro domain Pseudouridine synthase, RluD; (InterPro:IPR006225); contains InterPro domain Pseudouridine synthase, Rlu; (InterPro:IPR006224); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) -0.491314544365485 -4.66788669377218 0.000705029237902583 1 5.11654334911894 13.6307330477755 -0.491314544365485 0.110791927443239
AT4G10000_at 6.99914938190523 6.74877114789853 7.20301653662704 7.29747015239757 7.43934637176589 6.88799982273088 7.16324571553564 6.47931406253198 5.77854853980184 6.41357523945073 7.05407239561549 6.64506437867595 6.68464422979128 6.81468229570867 6.63994656541544 7.16631620291183 7.32395142100341 6.89589802068789 6.07006744267808 0.207735343743436 0.208674027571361 0.214057697498775 0.213910173096715 0.20926691305389 0.214411798554067 0.213986831126616 0.212660401063688 0.236997105843711 0.208864215018503 0.207349227328877 0.207748294062151 0.207349227328877 0.207349227328877 0.218548569825647 0.207349227328877 0.219843490224575 0.215570549561867 0.210575840954819 4 4|0 -|/ 6260726 6261943 6261251.556 6260307 6263178 - gene protein_coding_gene FALSE TRUE AT4G10000.1|AT4G10000.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03880.1); similar to hypothetical protein ABO_1568 [Alcanivorax borkumensis SK2] (GB:YP_693288.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.58750650433093 4.66646859558745 0.000706642517850696 1 5.11459308183088 13.5225236552757 0.58750650433093 0.158923765546961
AT3G06150_at 8.49902003259289 8.61904817353395 8.14714146808983 8.06962373323964 8.73193567935284 8.76531396016519 9.02044434968789 9.21459765480829 9.37023165189058 8.99637078489635 9.01650562751605 8.74462858877303 8.83699901749537 8.68367946820098 8.68747546597439 8.83396866703483 8.38911001147244 8.64829582644528 8.972786335576 0.0935535471759562 0.0911231249739207 0.0978264151589475 0.10809214113042 0.090867354274941 0.0931238859931812 0.0915975058648661 0.0981685024362521 0.102572354329907 0.0941792391522779 0.097380637224381 0.0939912564020134 0.0909292542959273 0.0975046668462115 0.090867354274941 0.0951104239735965 0.100913226643929 0.0997844292324512 0.09869555181812 3 3 - 1861995 1862487 1862246.818 1861803 1864122 - gene protein_coding_gene FALSE TRUE AT3G06150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19060.1); similar to Os05g0396900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055465.1); contains domain no description (G3D.2.60.40.10); contains domain E set domains (SSF81296) -0.396410299558737 -4.66587445277783 0.000707319591648737 1 5.11377587190637 17.5549968438847 -0.396410299558737 0.0421150380023958
AT1G21390_at 4.87298215235635 4.95991310866907 5.62912759907119 5.46497352234178 4.92419708176334 4.33392523588618 3.22751325930959 2.79983770189653 2.94312438670004 3.36243710751483 2.92001897604214 3.22903084724663 2.94462575064621 2.95796638173402 2.64108307661940 3.09125628895995 2.45077806658086 2.53108619156478 2.43402691380659 0.348055871777477 0.339164216618815 0.345908611026282 0.3385079911689 0.332387896494265 0.349959344116158 0.336863501481462 0.342863355932285 0.330064831765413 0.336647727176019 0.330064831765413 0.332840283037317 0.33129744472529 0.337095257746694 0.330064831765413 0.333807808883744 0.334106576945640 0.339489600431274 0.330064831765413 1 1 - 7489902 7490334 7490100.571 7489140 7490726 - gene protein_coding_gene FALSE TRUE AT1G21390.1 EMB2170 (EMBRYO DEFECTIVE 2170) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76980.1) 0.527764432812418 4.66566182662471 0.000707562062344776 1 5.11348340179138 7.40602212437745 0.527764432812418 0.130174702772926
AT4G29720_at 5.64758563597516 6.39953012843916 4.42674849806329 5.09925050773512 4.90565746823883 5.40427546691843 7.40165720760515 7.73735815770382 5.87071840100255 6.09078752951565 6.67657741400225 7.23150943140985 6.64968455623497 6.71785208979722 6.92574821132798 6.52823127821667 5.89476074886667 5.74804705379774 6.2931222677512 0.228558125978597 0.231779768478207 0.239670899959138 0.242816773064432 0.234025732938347 0.233869268606783 0.235048341243381 0.244014181882025 0.231534781628647 0.245718919438079 0.228558125978597 0.228558125978597 0.228558125978597 0.229555592673417 0.230371969058702 0.228558125978597 0.239909820498926 0.231527131661696 0.234205808348970 4 4 - 14553510 14554022 14553777.364 14553321 14555173 - gene protein_coding_gene FALSE TRUE AT4G29720.1 ATPAO5 (POLYAMINE OXIDASE 5); amine oxidase similar to amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G16310.1); similar to putative polyamine oxidase [Brassica juncea] (GB:AAO16558.1); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.687937257662517 -4.66490722570717 0.000708423287158712 1 5.11244537503587 12.1934715908581 -0.687937257662517 0.203219124708352
AT1G70370_at 9.1914611207687 9.59224054806621 8.55618556804408 8.63159807060078 8.98469376374412 8.80255408052193 9.8333241958695 10.0162753894847 9.56819902655489 9.44830845595185 9.84259078219474 10.1889998440277 9.24019975572669 9.48273386282294 10.0235402999679 9.11773123788503 8.68260676420163 9.35969446236114 9.38992990198422 0.133934756224862 0.128006684625661 0.13590855447257 0.135648718691378 0.127137564100569 0.143790095354012 0.133990080654516 0.130240978439918 0.144597963387888 0.139611123677551 0.138490101185891 0.134874478575144 0.129577275324715 0.132606364421852 0.129830212069648 0.129461725566672 0.127716596858176 0.133410543712744 0.126781838251376 1 1 - 26516668 26517183 26516887.455 26516385 26518851 - gene protein_coding_gene FALSE TRUE AT1G70370.1 BURP domain-containing protein / polygalacturonase, putative Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); similar to JP630, polygalacturonase [Arabidopsis thaliana] (TAIR:AT1G23760.1); similar to BURP domain-containing protein / polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT1G60390.1); similar to Polygalacturonase-1 non-catalytic subunit beta precursor (AroGP1) (Polygalacturonase converter) (PG converter) (GB:Q40161); similar to polygalacturonase isoenzyme 1 beta subunit homolog (GB:AAB39546.1); similar to Polygalacturonase non-catalytic subunit AroGP2 precursor (GB:P93217); contains InterPro domain BURP; (InterPro:IPR004873) -0.445558889084027 -4.66285487284847 0.00071077122382851 1 5.10962166655887 18.6815788859602 -0.445558889084027 0.0835259406572299
AT1G13810_at 2.21003572756222 2.88712546528958 2.67096822601716 2.82167983342430 2.67956102838012 2.47231213972068 4.02563359223709 3.68273717486027 2.33902964791074 2.67817562968088 1.96375456244440 1.84857929800502 2.12329959463756 1.79658747830694 2.37683183441732 2.48355915234661 2.60269016104891 1.79046927775625 2.99790111405661 0.199520777913934 0.199520777913934 0.199520777913934 0.201936994135123 0.199965773437197 0.200161724564463 0.208676139146913 0.204283512259364 0.201822448266908 0.199520777913934 0.206474642599325 0.201978772927054 0.202830504614796 0.210932230656877 0.199520777913934 0.200444337578616 0.208730406363698 0.207533161299662 0.208095957551068 1 1 + 4734628 4735117 4734872.727 4734033 4735386 + gene protein_coding_gene FALSE TRUE AT1G13810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67660.2); similar to H0811E11.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09491.2); similar to OSJNBa0081L15.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE03158.2); contains domain no description (G3D.3.90.320.10); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992:SF3); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992); contains domain Restriction endonuclease-like (SSF52980) -0.544366696890381 -4.66266519216572 0.000710988636050168 1 5.10936065959022 5.32871842364632 -0.544366696890381 0.138626891697895
AT1G10585_at 2.33021776490074 2.28898290433434 2.34151469268427 2.29307023976628 3.16787154940538 2.31445736506085 2.23797356918190 2.06691662514171 2.34534180423857 2.03017903297625 3.03272663285685 2.88731414614747 2.63072725361700 2.14781331311105 3.17155650583982 3.59298188941449 2.96127697563796 2.73996356866216 1.78563538705005 0.202789612742732 0.201619938713554 0.212310717248857 0.209466722388057 0.216481122842159 0.204616667970392 0.205766811427226 0.203788327312985 0.209643716241263 0.221185689725919 0.202512014415410 0.201559057555159 0.215345343723237 0.205598957680508 0.212628685897022 0.204670322161530 0.214882941803429 0.213997952521574 0.20502335953845 1 1|0 -|/ 3494171 3494486 3494397.375 3493958 3495136 - gene protein_coding_gene FALSE TRUE AT1G10585.1 transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G20970.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB78624.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.570016020039376 4.66179721920245 0.000711984401627384 1 5.10816622039681 4.85475747735067 0.570016020039376 0.1510266033514
AT3G14790_at 6.34757018879905 6.79324898394415 5.78844250287685 5.88869437672752 5.277814615376 5.58159140156933 6.709334523183 7.21194210547873 6.5062901169875 6.0382767480208 6.90163941714912 7.01220537596669 6.23301101603761 6.65693203192223 6.04767348997835 6.55191434570499 5.67528188343548 6.00717721495924 6.36481696136274 0.200102225553691 0.199504329456619 0.202236989722476 0.207894109569130 0.208639864401661 0.204410657920073 0.202482349754769 0.207768559887435 0.208116501242201 0.198292117741521 0.21526899089558 0.197862154460128 0.207322600896204 0.197697974106477 0.200867013834002 0.195995441463216 0.198987297728582 0.207086478465340 0.210321456333347 3 3 + 4966219 4966846 4966552.818 4964162 4967082 + gene protein_coding_gene FALSE TRUE AT3G14790.1 RHM3 (RHAMNOSE BIOSYNTHESIS 3); catalytic Identical to Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC 1.1.1.-) (RHM3) [Arabidopsis Thaliana] (GB:Q9LH76); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1), UDP-glucose 4,6-dehydratase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G78570.1); similar to UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase (ISS) [Ostreococcus tauri] (GB:CAL58329.1); similar to rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95280.1); similar to Os03g0278200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049724.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-glucose 4,6-dehydratase; (InterPro:IPR005888) -0.524393410721635 -4.66049831100125 0.000713477294110723 1 5.10637851726832 12.5442584817533 -0.524393410721635 0.128757175761119
AT2G31230_at 4.6073126080513 4.81232596702199 4.94005542784722 4.51322597680794 5.42575868652355 4.98121276601171 4.84271384573044 5.13800423449365 3.93517209679903 4.18242943646672 5.2130816148187 5.53767057815029 5.15174609201819 5.1272326063437 4.73492827674721 4.45741841515533 5.16317571173378 5.22349031761438 4.37132555850153 0.216205323057047 0.209568419294920 0.211435499616184 0.208145291258409 0.220554824886950 0.223969919792716 0.212976800850719 0.21478193544663 0.21264660550305 0.21588638184591 0.217085281522829 0.209755825817374 0.205353527795749 0.204871270549633 0.210705720593221 0.207965410256471 0.221820215253640 0.222472873540254 0.216527110775404 2 2 - 13313756 13314328 13314091.455 13313670 13314552 - gene protein_coding_gene FALSE TRUE AT2G31230.1 ATERF15 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 15); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Identical to Ethylene-responsive transcription factor 15 (Ethylene-responsive element-binding factor 15) (EREBP-15) (AtERF15) (ERF15) [Arabidopsis Thaliana] (GB:Q8VYM0;GB:Q9SJX3); similar to ethylene-responsive factor, putative [Arabidopsis thaliana] (TAIR:AT1G06160.1); similar to ethylene responsive element binding protein [Lycopersicon esculentum] (GB:AAN77067.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.514045652395101 4.65966727826747 0.000714434165779948 1 5.10523460388464 9.5271105134752 0.514045652395101 0.123468329355371
AT1G01770_at 6.02990329463829 6.97034835292593 6.88681501887778 7.19759264319518 7.89284664593837 7.60368362658754 5.75318093710274 5.84735622514348 6.43405259663742 6.8205864170615 6.4342194677072 6.95431775307769 6.67309366807149 6.959013042697 6.18068558951766 7.32774139932333 6.88027146315896 6.82364039163533 7.02730623508817 0.234512078414066 0.230160160632099 0.236683852733480 0.237384207345013 0.227108565871598 0.227108565871598 0.229206216507512 0.228082067765891 0.250195269847084 0.231555730253407 0.234905563119232 0.227108565871598 0.227108565871598 0.242203591923409 0.241878505740679 0.230383440952986 0.2459807382091 0.240770677446467 0.228666459229537 1 0|1 /|+ 281461 282151 281850.9 278615 282891 + gene protein_coding_gene FALSE TRUE AT1G01770.1 similar to Protein of unknown function DUF1446 [Rhodospirillum rubrum ATCC 11170] (GB:YP_426562.1); similar to Os07g0457300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059563.1); contains InterPro domain Protein of unknown function DUF1446; (InterPro:IPR010839) 0.631755855916662 4.65933757765576 0.000714814165611572 1 5.10478073918915 13.5426014746316 0.631755855916662 0.179301992799683
AT4G40040_at 11.6395401450412 11.7201476747781 11.7621700166789 11.9173444757914 12.1633133963775 12.1676563936084 11.4495440632834 11.7858524719926 11.7513286836151 11.4570736714076 12.0749823736111 12.0638233258882 12.2360695370204 12.056339879965 12.1112064694624 12.0625612524996 12.0530690821844 11.8977209465859 11.5388649863387 0.0622575393716748 0.060880390271816 0.0650914999777931 0.0623253859539494 0.0636931167904357 0.0649196560266426 0.0607492097329708 0.0619700501775017 0.0640323979298526 0.0627594750429208 0.0603696495802782 0.0614177358658012 0.0605765577529177 0.061605734878487 0.0623558936051955 0.0603696495802782 0.0663683613035584 0.061198095580982 0.063050492903365 4 4|0 -|/ 18557544 18558164 18557817.2 18557181 18558737 - gene protein_coding_gene FALSE TRUE AT4G40040.1|AT4G40040.2 histone H3.2|DNA binding Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to disease-resistent-related protein [Oryza sativa] (GB:AAL78367.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.420449571560930 4.65785434080468 0.000716526320221427 1 5.1027386883013 23.6516431074552 0.420449571560930 0.0656009337032775
AT3G04030_at 4.70134027245987 4.66690783437998 5.58856754334791 5.5502890892533 4.47124529308107 4.55689651052129 4.14648274204013 4.09848351444848 3.73927421680889 3.84435288243414 4.35983890564703 4.14923059708809 3.7993915154604 3.76734804207694 3.71476182126351 3.11448628702639 4.0784698908598 3.84958916055865 3.60752079790653 0.195494673462868 0.191978398762255 0.194672681969090 0.194005596437203 0.18648489929532 0.186303169402275 0.191493265795127 0.196515030790865 0.187908411068785 0.186303169402275 0.188266788144468 0.186303169402275 0.195113862271823 0.186303169402275 0.186303169402275 0.198107655430996 0.194200454557067 0.189106782492736 0.188513017058068 3 3 - 1042933 1043499 1043265.909 1042889 1044705 - gene protein_coding_gene FALSE TRUE AT3G04030.1|AT3G04030.2 myb family transcription factor similar to MYR1 (MYB-RELATED PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G18240.2); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83815.1); similar to Os05g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055886.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to MYR1 (MYB-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G18240.4); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83815.1); similar to Os05g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055886.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.381101456666598 4.65540654210589 0.000719361355719462 1 5.09936784288805 8.5147876798819 0.381101456666598 0.0191855816081855
AT1G77440_at 8.28979331946424 8.22637225797263 8.37566624001515 8.4944920041676 8.40878603352651 8.46361635022126 8.27506841051066 8.1778780145897 7.66856857684257 6.83435188217134 7.78955243684994 7.67738142881436 7.37561624921098 7.84762582568243 8.1408240302275 7.8493650062167 7.80739854648853 7.72620614464398 7.08700355500116 0.140726150982222 0.143482235580354 0.143299954734515 0.135727312668298 0.135327160313605 0.152619029114956 0.134866118498195 0.141747769461775 0.157008112347996 0.152826184275228 0.141747577927986 0.138568745470555 0.145045669004503 0.139556874246353 0.143461230826379 0.137975234901997 0.142959070781764 0.144777368319059 0.145844981700253 1 1|0 +|/ 29101361 29102743 29101869.5 29100914 29103344 + gene protein_coding_gene FALSE TRUE AT1G77440.1|AT1G77440.2 PBC2 (20S proteasome beta subunit C 2); peptidase Encodes beta subunit of 20s proteosome complex which is involved in protein degradation. Identical to Proteasome subunit beta type 3-B (EC 3.4.25.1) (20S proteasome beta subunit C-2) (PBC2) [Arabidopsis Thaliana] (GB:O81153;GB:Q9CAR1;GB:Q9SRH0); similar to PBC1 (20S proteasome beta subunit C1), peptidase [Arabidopsis thaliana] (TAIR:AT1G21720.1); similar to 20S proteasome, A and B subunits [Medicago truncatula] (GB:ABE79860.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.386733513430050 4.65474309357635 0.000720131793532239 1 5.09845403461357 15.8256528520694 0.386733513430050 0.0302692988750831
AT1G70790_at 7.68440398983995 7.12708026779006 7.72040204224191 7.64281508097865 8.04240875979802 7.64311374366867 7.14157838907516 6.54961701340167 6.42910716278764 6.28990565960935 6.78736985006427 6.95920093068539 7.02666221269081 6.7403507484489 7.43540738096907 7.38518030725714 7.09924105732931 6.89132827007265 6.81712408957028 0.196275917228036 0.194925284071387 0.195509119568531 0.193342794592726 0.195357326451333 0.196062234208409 0.199638364021079 0.207154277246059 0.196145816624723 0.195422678497028 0.195112383941091 0.192305472356213 0.193050528949237 0.199271973022397 0.200059071423981 0.199443793130431 0.204957527332018 0.198778610879399 0.193922151710487 1 1|0 +|/ 26704438 26705753 26705401.6 26704074 26706008 + gene protein_coding_gene FALSE TRUE AT1G70790.1|AT1G70790.2 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01540.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.582530974506184 4.65429978760058 0.000720647072337923 1 5.09784339979867 14.2202465268553 0.582530974506184 0.157326035298673
AT3G01310_at 10.3302704014486 10.2947281506736 10.2476799219643 10.1983228810707 10.7332318404817 10.5396946998773 9.79657857606564 9.71989116275442 9.72872967135065 9.68696306860586 10.3092544960210 10.1295732935016 10.0848409313784 10.0115469095747 9.87504159289787 9.97481986511128 10.0877912928612 10.1305072317292 9.64362989963113 0.102038825403713 0.101167833392815 0.108606082156372 0.105486106146012 0.0996422241489431 0.100913492976195 0.105814343446593 0.100974648007512 0.113478542746455 0.102342097055899 0.103088741505195 0.100940353117843 0.100120650128687 0.117158834924647 0.105123977587426 0.100045146078344 0.103826533223637 0.102526118155398 0.100926640334107 3 3 - 94377 95115 94749.364 94184 101999 - gene protein_coding_gene FALSE TRUE AT3G01310.1|AT3G01310.2 acid phosphatase similar to acid phosphatase [Arabidopsis thaliana] (TAIR:AT5G15070.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53244.1); similar to PREDICTED: similar to KIAA0377 splice [Gallus gallus] (GB:XP_413955.2); similar to LOC495012 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98273.1); contains InterPro domain Histidine acid phosphatase; (InterPro:IPR000560) 0.391673167442391 4.65357448691265 0.000721490966521022 1 5.09684425629393 20.1134811200405 0.391673167442391 0.0375321029996216
AT4G33100_at 3.96039364943781 4.08006259906505 4.29148073006761 4.24507475255935 4.34190607833626 4.07106576862351 3.53315029668072 3.09677934447158 3.20530450052349 3.11821839932588 3.99238764380787 3.76139752370134 3.53805402862037 3.83438757410611 3.12039926416301 3.45456573410192 3.57516333117506 3.29463173755254 3.35762109384700 0.223652798802648 0.227389732205686 0.221549232110650 0.228038722403339 0.226312321634175 0.223943388806888 0.220233634468639 0.22433323953067 0.226648799355549 0.221556401779116 0.220233634468639 0.222873055140256 0.221273337008348 0.223825293052818 0.224760413456456 0.221473500513137 0.229354247940264 0.223688744655455 0.222971419598219 4 4|0 +|/ 15971720 15972305 15972054.444 15971177 15972492 + gene protein_coding_gene FALSE TRUE AT4G33100.1 Identical to Uncharacterized protein At4g33100 [Arabidopsis Thaliana] (GB:Q9SMZ9;GB:Q680I9); similar to Os09g0361700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062985.1); similar to p53-inducible cell-survival factor [Xenopus tropicalis] (GB:NP_001016268.1); contains InterPro domain Protein of unknown function UPF0203; (InterPro:IPR007918) 0.457055358368814 4.65236778979029 0.000722897276760498 1 5.09518176022988 7.3516998286814 0.457055358368814 0.0916125064787121
AT2G03450_at 4.35888112446436 5.07265548344453 5.4648221150021 5.56864340723607 4.90529247388722 4.80443003948666 3.61960540638768 3.94874871757232 4.20236784793361 3.83646811491284 4.03524588996228 3.87580102968402 4.1482244462773 4.65318749282628 3.65115490193895 4.41957765513294 4.18191293050216 4.29705428735182 3.98845413210926 0.234091663718025 0.233739525536703 0.231725694609754 0.230007723533448 0.246856208624315 0.248609493952233 0.2438948097594 0.239805365527431 0.235663941142347 0.230007723533448 0.230007723533448 0.230007723533448 0.230007723533448 0.230050012250586 0.234334991640119 0.230011604561209 0.236333536116298 0.234988649998231 0.234363864338346 2 2 + 1043036 1043513 1043239.364 1041385 1043664 + gene protein_coding_gene FALSE TRUE AT2G03450.1 ATPAP9/PAP9 (purple acid phosphatase 9); acid phosphatase/ protein serine/threonine phosphatase similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G13900.1); similar to Os07g0111600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058738.1); similar to calcineurin-like phosphoesterase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC15853.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.542248728413349 4.65003577968051 0.000725623236376972 1 5.09196818088832 8.80131810969914 0.542248728413349 0.138309683579916
AT2G47190_at 3.36160804103218 3.82048363797184 4.915002584179 4.6985470359301 4.11373089153108 3.5987376696131 2.00671848299839 2.35724643398344 2.78182756922118 2.46506232627319 1.65099557464945 2.01736015790473 1.94559391920599 2.10328333019271 2.17074794598412 2.19918516314058 2.12103355980153 2.67606228410163 2.1583439923902 0.299883486022852 0.302057282712003 0.304973429062022 0.315513816756384 0.30023400930644 0.308104320981716 0.290605693981639 0.292588008457819 0.292955264227614 0.293299708018166 0.294509745558792 0.294523739271156 0.292824391169696 0.294400413054106 0.303740654187761 0.290605693981639 0.30584290896197 0.30412801353731 0.290605693981639 2 2 + 19383706 19384332 19384108.273 19383272 19384601 + gene protein_coding_gene FALSE TRUE AT2G47190.1 MYB2 (myb domain protein 2); DNA binding / transcription factor Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin. similar to AtMYB78 (myb domain protein 78), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G49620.1); similar to MYB transcription factor Atmyb2 [Arabis gemmifera] (GB:BAB62110.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.543555921113966 4.64856788286686 0.000727344656291988 1 5.08994489417456 5.89848136607195 0.543555921113966 0.139038161073206
AT1G63640_at 3.72181921924816 3.60080289044589 3.16738725647838 3.24478755160313 3.57811916991928 2.95644332966332 4.31946905108246 3.63110745438911 3.87721693510928 4.22744883817844 3.76894091767226 3.89500078255722 3.55117163466325 3.0235615711933 4.1809720619952 3.64646288555411 3.11093869564385 3.46989433917272 4.45005834322431 0.274315100146576 0.281389055222052 0.281455831286151 0.282309447291873 0.279007158545516 0.294727499432497 0.273748360245093 0.284284516157773 0.293046174912887 0.273748360245093 0.277057370664986 0.273748360245093 0.281051839511914 0.298458103013522 0.276733526295929 0.278589531045947 0.287319378368255 0.279807834195469 0.273748360245093 1 1 - 23592910 23593694 23593272.444 23592730 23599438 - gene protein_coding_gene FALSE TRUE AT1G63640.1|AT1G63640.2 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G18410.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G41310.1); similar to microtubule motor [Arabidopsis thaliana] (TAIR:AT1G73860.1); similar to putative Carboxy-terminal kinesin 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD26164.1); similar to Os01g0744000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044222.1); similar to putative kinesin [Oryza sativa (japonica cultivar-group)] (GB:AAT69670.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) -0.592827752328114 -4.64842528378588 0.000727512112931299 1 5.08974832184016 7.41037994030063 -0.592827752328114 0.162428032143174
AT3G47810_at 10.3195131058116 10.3054672557790 10.7098671008489 10.7518317906522 10.8414053582231 10.3344826543354 10.1115058132909 10.1021832392330 10.0218686641049 9.65559595890462 10.2035340373750 10.0249784713373 9.85304462641855 10.2248431011086 10.0341030433323 10.0756715105507 10.0716472979561 10.2723475094413 9.25073845960655 0.104365955445789 0.102589516218568 0.102264337470064 0.111078282095174 0.104587958763326 0.115509901432253 0.103421636009277 0.103338102149433 0.109708176845772 0.104689205538084 0.102264337470064 0.102264337470064 0.106824674811752 0.105265043599841 0.106697008716633 0.103957495190602 0.116973681701502 0.103329704334328 0.106922878566073 3 3|0 -|/ 17648319 17649964 17649081.778 17648107 17650676 - gene protein_coding_gene FALSE TRUE AT3G47810.1|AT3G47810.2|AT3G47810.3 MAG1 (MAIGO 1); protein serine/threonine phosphatase Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. similar to Protein of unknown function UPF0025; Metallophosphoesterase [Medicago truncatula] (GB:ABE77945.1); similar to Os02g0265400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046499.1); contains InterPro domain Protein of unknown function UPF0025; (InterPro:IPR000979); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.45100810565212 4.64743664278253 0.000728674208642579 1 5.08838538722097 20.3034098200528 0.45100810565212 0.0880737495885474
AT1G18830_at 1.80194420802103 1.21836277031242 1.41386815809217 1.77156953440845 1.44786101032903 1.30284429325062 2.47586278680197 2.15436784748472 2.37255546067948 3.12178919506733 1.91158468518868 1.85649845137365 1.49029694010197 1.71248810887939 1.58548313454884 1.72391728753535 2.17413977732087 2.20965583689909 1.90959527462706 0.191775282769033 0.188078229588058 0.194615722342807 0.194843880379716 0.188078229588058 0.189504905539524 0.200253515668186 0.196287402156969 0.191733051641731 0.192404232428523 0.190794027943094 0.188078229588058 0.190073234027295 0.195102483065624 0.197466316531148 0.188981160456657 0.188994046070523 0.195346480510961 0.195123630089482 1 1|0 +|/ 6493285 6494140 6493592.444 6489300 6494209 + gene protein_coding_gene FALSE TRUE AT1G18830.1 transducin family protein / WD-40 repeat family protein similar to EMB2221 (EMBRYO DEFECTIVE 2221) [Arabidopsis thaliana] (TAIR:AT3G63460.1); similar to Sec31p [Oryza sativa] (GB:BAB47154.1); similar to Os07g0657200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060510.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.531785301597641 -4.64738736961368 0.000728732177783988 1 5.08831745511251 3.84882907834868 -0.531785301597641 0.133252811814622
AT1G74240_at 3.92281865708347 3.71189968190411 3.70753445885732 3.7317705178741 2.74716161391442 2.82739539415524 3.6560865102553 3.80741951547829 3.21723216267402 3.58644491872758 2.76827861842277 2.85688372915364 3.15567181203199 3.18084771413119 3.12967413483094 3.05554909709605 3.31668137226324 2.91068808822521 3.16953250715819 0.219995995449920 0.222156352387330 0.224300740589103 0.2163960613923 0.222867771565719 0.239117872334372 0.218825544838933 0.230001480643525 0.226443359948108 0.217769629771809 0.226346151253487 0.217952912091095 0.221228174974891 0.224115572825556 0.224974634064867 0.218138137343925 0.230355758334038 0.225087068866335 0.224895589259916 1 1|0 +|/ 27922738 27923617 27923303.375 27921057 27923800 + gene protein_coding_gene FALSE TRUE AT1G74240.1 mitochondrial substrate carrier family protein similar to SAMC2 (S-adenosylmethionine carrier 2), binding [Arabidopsis thaliana] (TAIR:AT1G34065.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE82038.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.399354735198623 -4.64701592344066 0.000729169334931412 1 5.08780533489981 6.69960455216827 -0.399354735198623 0.0472072501163613
AT3G52430_at 6.82103332622229 7.39777004811265 7.80061529130106 8.23044492361412 7.23347040499599 6.22189603516012 4.18950624297764 4.12453005735485 5.24136494337093 5.10287528794461 4.43072152389271 4.72007013593781 4.42856699593065 5.33294805352866 4.27045067654551 4.91661942536656 4.61189842747459 4.67792302158312 4.6137978525191 0.293561516362109 0.300867471476380 0.280400623379341 0.295818641759301 0.311943848533061 0.295146475179125 0.271894990580596 0.275593337277752 0.284263329568076 0.270447287602077 0.270629856527506 0.270447287602077 0.272714401454086 0.279883561966103 0.29198934008504 0.270447287602077 0.281624441962019 0.270447287602077 0.272192285847490 3 3 + 19444740 19445170 19444928.636 19442349 19445381 + gene protein_coding_gene FALSE TRUE AT3G52430.1 PAD4 (PHYTOALEXIN DEFICIENT 4); triacylglycerol lipase Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. similar to SAG101 (SENESCENCE-ASSOCIATED GENE 101), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT5G14930.2); similar to phytoalexin-deficient 4-2 protein [Solanum tuberosum] (GB:AAW82884.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.713016916510933 4.64391283575247 0.000732832183909345 1 5.08352611673219 11.3322395297893 0.713016916510933 0.215095416995445
AT1G15250_at 4.65103160407984 4.76016416204087 3.86446871573674 3.73882679150343 3.21167322113701 3.89529201374315 3.99957062203762 5.12055145721452 4.37488993518068 4.05562093023529 3.31210723115415 3.80087619841911 3.81098028552281 3.67197588188073 4.33601740089111 3.805204772537 3.59876363229946 3.48974093964125 4.36457940372992 0.232205249001007 0.234931197742814 0.229322334409672 0.225751800396708 0.226011507699895 0.228682321078613 0.230983725873473 0.229673880630800 0.23580710476336 0.225184776459295 0.233932947419907 0.226847503071477 0.231768565827048 0.234404312108070 0.228073701264871 0.229362251086349 0.238133613671422 0.228336056246929 0.225184776459295 1 1|0 -|/ 5248826 5249270 5249062.6 5248659 5249469 - gene protein_coding_gene FALSE TRUE AT1G15250.1 60S ribosomal protein L37 (RPL37A) Identical to 60S ribosomal protein L37-1 (RPL37A) [Arabidopsis Thaliana] (GB:Q8LFH7); similar to 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana] (TAIR:AT3G16080.1); similar to ribosomal protein L37 [Glycine max] (GB:AAS47512.1); contains InterPro domain Ribosomal protein L37e; (InterPro:IPR001569) -0.746043036367612 -4.64016798663321 0.000737278375365355 1 5.07835968692395 8.1518165146909 -0.746043036367612 0.229036294487012
AT4G24780_at 10.4219279356950 10.6177905423354 9.78175630407335 9.70369262238497 10.2944465768357 10.4246648480970 11.1993956569917 11.5058110310539 11.1571255926246 10.9476447921352 11.0901918709099 11.1893703424896 11.2490146790648 11.0781526036778 11.3046402975960 11.2723768273327 10.8407588598005 10.9241384282452 11.1268133587032 0.0861278899432031 0.0817889788034138 0.0898956066159396 0.0893781019099524 0.0842306898382657 0.0837085410175332 0.0842076365567368 0.0830103965724236 0.0886541234400784 0.0823927484060596 0.082821970497787 0.082821213551144 0.082046193598227 0.0925846079464464 0.0848150217583211 0.0825366247167323 0.0879505237506089 0.0863181282204097 0.087969368776326 4 4 - 12770645 12771277 12770857.818 12770341 12772343 - gene protein_coding_gene FALSE TRUE AT4G24780.1 pectate lyase family protein Identical to Probable pectate lyase 18 precursor (EC 4.2.2.2) (Pectate lyase A10) [Arabidopsis Thaliana] (GB:Q9C5M8;GB:O23667;GB:Q8LAW7;GB:Q9SB71); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G67750.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G63180.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G27400.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to pectate lyase [Malus x domestica] (GB:AAQ84042.1); similar to Pectate lyase [Prunus mume] (GB:BAE48664.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.421852648093008 -4.63718613348395 0.000740838984231228 1 5.07424416585568 21.5915732245803 -0.421852648093008 0.0681983111879412
AT1G63480_at 2.47523140595939 2.19264837293612 2.30693360579431 2.15725696748357 2.34703114270143 2.53934232768264 1.63663768100046 1.88406387457742 1.70050504566792 1.71328278343728 2.62897306893697 2.62785524373205 2.04804090909369 2.13671946166201 2.85987145768846 2.10936502654155 2.19151535830555 1.89508053216217 1.78829867066615 0.207253640277568 0.207253640277568 0.208833667063142 0.210799642307175 0.207253640277568 0.207842714357215 0.210101330549756 0.207875831931937 0.222359702487041 0.219028821995896 0.212422151291285 0.209732576136863 0.212631227295164 0.207253640277568 0.220038790191321 0.207253640277568 0.219562263625809 0.210350742056605 0.211634467816902 1 1|0 -|/ 23543548 23544318 23543835.9 23543222 23545802 - gene protein_coding_gene FALSE TRUE AT1G63480.1 DNA-binding family protein similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT1G63470.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE92131.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.434322238152666 4.63701516908214 0.000741043679545165 1 5.07400815624481 4.21549640502813 0.434322238152666 0.077481267344133
AT3G20440_at 2.82611664833167 2.78400912891562 2.02472170016033 2.41477887027682 1.9072871436518 1.82361429467722 2.02473136803272 2.35824935864042 1.88891136351656 2.17103342896959 1.46239423061813 1.82446849553739 1.34712810849049 1.28676829425176 1.49636559776568 1.64274543011417 1.84972895400361 1.78032059850053 2.0518662119393 0.219227618955154 0.210764696659434 0.20885172754641 0.210380358640882 0.207381778251743 0.199028622451059 0.213342263337647 0.214573351421585 0.208866233110453 0.204280769331813 0.199028622451059 0.204542934000555 0.207343609628853 0.205873857788963 0.212476810100677 0.199750429673934 0.207558294745818 0.206719969584218 0.209892565598549 3 3 - 7123448 7125099 7124372.1 7123203 7130442 - gene protein_coding_gene FALSE TRUE AT3G20440.1 BE1/EMB2729 (BRANCHING ENZYME 1, EMBRYO DEFECTIVE 2729); alpha-amylase similar to SBE2.1 (STARCH BRANCHING ENZYME 2.1), 1,4-alpha-glucan branching enzyme [Arabidopsis thaliana] (TAIR:AT2G36390.1); similar to glucan (1,4-alpha-), branching enzyme 1 [Mus musculus] (GB:NP_083079.1); similar to Os06g0367100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057611.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047) -0.453353247468413 -4.63613878274254 0.000742093910410268 1 5.07279826045991 4.08219371332018 -0.453353247468413 0.0902796566714935
AT1G16260_at 9.12664859614105 9.13951558883977 8.92869155683825 8.97010069524145 8.68988148763282 8.76581134108584 8.43398431420163 8.40653296402556 9.10238342317527 8.4641169155542 7.97253029942908 7.9861880710213 8.17250818118714 8.09662770189255 7.50091334259167 8.36377483295236 8.40243086016353 8.36744198227213 9.21206547567388 0.160641872584344 0.150979733747089 0.151843124598533 0.155660695992354 0.155113555224690 0.151930884670455 0.155065576272797 0.157917664204141 0.15938925167935 0.162680640498932 0.155775751670355 0.157168090346652 0.163406771037543 0.159297714695681 0.175544413768686 0.154898732099656 0.152352684117120 0.157159067399799 0.150979733747089 1 1 - 5559713 5560169 5559917.909 5559573 5562107 - gene protein_coding_gene FALSE TRUE AT1G16260.1 protein kinase family protein Identical to Wall-associated receptor kinase-like 8 precursor (EC 2.7.11.-) (WAKL8) [Arabidopsis Thaliana] (GB:Q9SA25); similar to RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1), kinase [Arabidopsis thaliana] (TAIR:AT1G79670.1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) -0.378217895732405 -4.63502225041032 0.000743434194313916 1 5.07125663940553 17.3246410748707 -0.378217895732405 0.0158599624018749
AT1G64150_at 6.81208053289724 6.53352640133629 5.29720472190561 5.39692122341809 6.83161305101213 6.07726936839315 7.29094400756884 7.27268698314242 7.1793492702896 7.05668913214215 6.84549143908228 7.34349421069184 6.67620863620713 7.53731433619613 7.44297449887612 6.88372526630367 6.06965485057613 7.1510009569219 6.78095455109607 0.235529650373154 0.236116981936165 0.235748177925144 0.237414087943391 0.227068286524899 0.231420094191498 0.228989012015921 0.228328888618818 0.243362411590555 0.240600952484813 0.231765382828867 0.226948611450239 0.231223884563196 0.242515788194469 0.231648555933144 0.236842044621112 0.24708064442386 0.235866511224722 0.226948611450239 1 0|1 /|- 23812718 23815132 23814190 23812574 23816340 - gene protein_coding_gene FALSE TRUE AT1G64150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13590.1); similar to Major intrinsic protein; Protein of unknown function UPF0016 [Medicago truncatula] (GB:ABE79746.1); contains InterPro domain Protein of unknown function UPF0016; (InterPro:IPR001727) -0.544244341769831 -4.63324682417528 0.000745570664202528 1 5.06880482696381 13.4387294573090 -0.544244341769831 0.140260083902135
AT2G44300_at 3.75286728272710 4.0869647252943 4.57846523907001 4.57361420145187 3.70220444454495 3.58105917661799 3.65717389598139 4.14007443265765 3.99823191968418 3.46437364027365 4.54704786591503 4.73672631385499 3.67769766871778 4.04890719229821 4.90757798712031 3.76468065510439 4.14894935276055 4.46240883767831 3.14455185255935 0.214328093602136 0.211865361462051 0.232828367787989 0.216128797829675 0.210594369833774 0.218182943214027 0.211448762069603 0.210366129862059 0.213683648389102 0.210932770026973 0.2242874021503 0.213364605251489 0.212936968581055 0.222228106011933 0.212914011076416 0.219175504232681 0.219897429032472 0.212730823045943 0.212918034760156 2 2 - 18314569 18315284 18314918 18314385 18315425 - gene protein_coding_gene FALSE TRUE AT2G44300.1 lipid transfer protein-related similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) [Arabidopsis thaliana] (TAIR:AT2G44290.1); similar to Protease inhibitor/seed storage/LTP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94168.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.475298013965782 4.63313594596238 0.00074570430443214 1 5.06865168935069 7.92028723563662 0.475298013965782 0.103762649662221
AT4G27370_at 2.57123534889266 2.0259074454943 2.64955513945853 2.39832383346485 2.35727314040966 2.77103429522821 2.03760809999611 2.05573915639232 2.30231009146734 2.57806736642897 3.32010808116549 3.41191086081332 2.92129712542089 2.98511590454122 3.41863667383723 2.82832416625159 2.73764274629225 2.68750267267465 2.25194448475544 0.217228060977177 0.221434622019690 0.223330972130922 0.230185903677990 0.224769700086182 0.217359754093074 0.217370248103745 0.226349574407272 0.229184459344087 0.217228060977177 0.220249234692976 0.217228060977177 0.22398873209283 0.222836806841575 0.230094702251491 0.217228060977177 0.219121848060791 0.231485791378759 0.218526782461470 4 0|4 /|- 13694900 13695498 13695176.7 13694887 13700786 - gene protein_coding_gene FALSE TRUE AT4G27370.1 VIIIB (Myosin-like protein VIIB); motor member of Myosin-like proteins similar to ATM2 (ARABIDOPSIS THALIANA MYOSIN 4) [Arabidopsis thaliana] (TAIR:AT5G54280.2); similar to ATATM (myosin 1), motor [Arabidopsis thaliana] (TAIR:AT3G19960.1); similar to VIIIA (Myosin-like protein VIIA), motor [Arabidopsis thaliana] (TAIR:AT1G50360.1); similar to myosin VIII ZMM3 [Zea mays] (GB:AAD31926.1); similar to IQ calmodulin-binding re (GB:ABE84244.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.516400360385231 4.63307203981891 0.000745781341224878 1 5.06856342547466 5.06646352062966 0.516400360385231 0.126226351719363
AT1G67810_at 7.35119061858898 7.3107345196717 7.35209308922783 7.82465786295848 5.73668014554893 5.38741706195199 2.90122036359186 2.86697253618112 3.28307036416695 3.51117334317949 2.37732189796332 2.32314947545051 2.64111051172642 3.21864855938772 2.05417971611565 4.24670212252284 3.59925608498852 3.23420583457092 3.66036113602769 0.324574459415404 0.333499987940533 0.331753831455880 0.332237110821772 0.332962007877532 0.328681524112093 0.318223304611685 0.315872651656886 0.319510178391087 0.315872651656886 0.324078211465920 0.31777648112886 0.316799879982312 0.317119557566417 0.322492131271187 0.315872651656886 0.324920373791582 0.315872651656886 0.315872651656886 1 1 + 25430334 25430879 25430607.091 25430151 25431012 + gene protein_coding_gene FALSE TRUE AT1G67810.1 Fe-S metabolism associated domain-containing protein similar to QS (QUINOLINATE SYNTHASE), quinolinate synthetase A [Arabidopsis thaliana] (TAIR:AT5G50210.1); similar to Os12g0290300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066600.1); similar to hypothetical protein tll1089 [Thermosynechococcus elongatus BP-1] (GB:NP_681880.1); similar to Os09g0270900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062734.1); contains InterPro domain Fe-S metabolism associated SufE; (InterPro:IPR003808) 0.472318012314709 4.63179310292171 0.000747324821293754 1 5.06679687589908 9.06471580294784 0.472318012314709 0.102103978742287
AT1G15510_at 3.44042717207916 3.38968079404722 3.30527702192588 3.28917174689209 2.32702952527042 3.12236511782573 3.84876818831863 3.42565911102650 2.35972505771448 3.24526372302273 1.94897738997246 2.19398141231489 1.82497544763961 2.04657013492560 2.04057480177543 2.50931239014649 2.7777333122377 2.27124175318605 2.91757152725262 0.198447500266738 0.201602270250564 0.198447500266738 0.201407794746878 0.20642010596284 0.205612426836269 0.200610374554538 0.207273065674017 0.201763697986817 0.205565337166509 0.204983952736842 0.204106363391845 0.203240237792277 0.210637653675811 0.202917402842327 0.202663687767486 0.201158646604159 0.20004687823773 0.202378112062212 1 1 + 5331108 5331650 5331343.909 5329106 5331706 + gene protein_coding_gene FALSE TRUE AT1G15510.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to Os05g0574800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056393.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83376.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.577177784555589 -4.63121266981095 0.000748026423861831 1 5.06599505165635 5.7898094678089 -0.577177784555589 0.156173044087715
AT3G57410_at 7.87416963819447 7.67132621120119 7.85038937849885 8.18432107863043 8.6684409415285 8.30213759827746 7.88494394200016 7.82872377806965 8.25623488657712 7.56043243849345 8.89502838463139 7.9515526263165 8.36517302081115 8.2054286824836 7.84902726089637 8.44376623135523 8.49148291087235 8.28936074614945 7.6823837797211 0.161086137229848 0.166225478313665 0.166944658952165 0.168114022146017 0.165192096687855 0.169800549580818 0.160452813307017 0.166462426606655 0.171589907112291 0.173008804193271 0.172319411953033 0.160951556189309 0.160817938433070 0.160452813307017 0.164137640270654 0.169516061938428 0.173665770550374 0.175171131169788 0.166162622386468 3 0|3 /|- 21254808 21255265 21255035.375 21254113 21262077 - gene protein_coding_gene FALSE TRUE AT3G57410.1 VLN3 (VILLIN 3); actin binding Encodes a protein with high homology to animal villin. Identical to Villin-3 (VLN3) [Arabidopsis Thaliana] (GB:O81645;GB:Q9LEA4;GB:Q9SCN1); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN2 (VILLIN 2), actin binding [Arabidopsis thaliana] (TAIR:AT2G41740.1); similar to VLN4 (ARABIDOPSIS THALIANA VILLIN 4), actin binding [Arabidopsis thaliana] (TAIR:AT4G30160.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96040.1); similar to actin bundling protein ABP135 [Lilium lon (GB:AAD54660.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96039.1); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Villin headpiece; (InterPro:IPR003128) 0.457433402438199 4.63054690266021 0.000748832028455833 1 5.06507527355408 16.1052413297351 0.457433402438199 0.0931919340951105
AT4G03190_at 4.60313320270764 4.88545937421363 2.77418333844199 2.76545683112804 3.85446601146989 3.92530826943702 4.02933833053238 3.78271590959124 4.17562874639538 4.87844938209294 5.47787117052305 5.98929781544907 5.04082380593872 5.00809404052141 5.66953242266083 5.34750947117969 4.42126961617482 5.58962840592841 6.42503509268085 0.208196642053683 0.212436725525682 0.216421289625026 0.225115995992038 0.204641435422278 0.209439788664075 0.212303426751002 0.209767215585749 0.217755985716498 0.21205645415331 0.214266891771219 0.206794628541335 0.209191575487917 0.204641435422278 0.208822615398855 0.204641435422278 0.209967361474391 0.211673176676849 0.208860977663042 4 4 - 1405219 1405671 1405411.636 1404887 1407139 - gene protein_coding_gene FALSE TRUE AT4G03190.1 GRH1 (GRR1-LIKE PROTEIN 1); ubiquitin-protein ligase Encodes an F box protein belonging to the TIR1 subfamily. This protein forms SCF complexes with ASK1 and CUL1 and interacts with Aux/IAA proteins in an auxin-dependent manner. It also has sequence similarity to the yeast protein GRR1, which is involved in glucose repression. similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB3 (AUXIN SIGNALING F-BOX 3), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G12820.1); similar to AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G26810.1); similar to Os05g0150500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054666.1); similar to auxin-responsive factor TIR1-like protein [Populus tomentosa] (GB:ABG56238.1); similar to Os04g0395600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052659.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.418504577575691 -4.63028467254912 0.000749149587944837 1 5.06471297353893 9.06636153374193 -0.418504577575691 0.0660392249547282
AT1G27980_at 7.60208640417119 7.47679955496935 7.86171668842401 7.72803889019427 7.47565004676784 6.74885689019576 4.10256069355349 4.44486211752148 5.10848035096137 5.26414216884928 4.21601762394997 3.94346742099523 4.58507100299346 4.62473387668949 4.36519174896595 4.44895282594104 4.96819735311265 4.76575653157933 4.44602525643382 0.226099312648727 0.221556566929344 0.231498232348483 0.23404082710114 0.223105592405272 0.235770626903826 0.219114394049179 0.224717931406784 0.219588755660954 0.223010214902612 0.222051228198213 0.220344401074426 0.226260809526645 0.219114394049179 0.224541951877629 0.222936801517903 0.231710776945614 0.223862339716527 0.225130827793991 1 1|0 +|/ 9751742 9752570 9752146.444 9748724 9752756 + gene protein_coding_gene FALSE TRUE AT1G27980.1 pyridoxal-dependent decarboxylase family protein Identical to Sphingosine-1-phosphate lyase (EC 4.1.2.27) (SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) [Arabidopsis Thaliana] (GB:Q9C509;GB:Q8LEF9); similar to glutamate decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT3G17760.1); similar to sphingosine-1-phosphate lyase [Oryza sativa (japonica cultivar-group)] (GB:AAX89367.1); similar to Sphingosine-1-phosphate lyase precursor (SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) (GB:Q52RG7); similar to putative sphingosine-1-phosphate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD45497.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129) 0.548556362810914 4.62938926719319 0.000750234988745226 1 5.06347578247266 11.3946828141129 0.548556362810914 0.142595898967932
AT1G14340_at 6.69138951274426 6.36551517698624 7.34628006594558 7.31314403259717 7.4302736495006 7.53873064940134 6.35944721063338 6.4750199105235 6.24942051835803 6.65033083832309 6.55967986213564 5.89737509787123 6.32239384383336 6.41459003108296 5.6393172049085 6.81814195980686 6.76120280511765 6.15982587315422 6.38003246001568 0.176843479710779 0.179094011498814 0.179466136740835 0.17750055715256 0.18254457939281 0.187319936591345 0.181164900619469 0.190888358529618 0.194869089840488 0.181258221350852 0.17446476889306 0.176723862086194 0.17940843824206 0.193154351906840 0.17446476889306 0.177549277664314 0.183964914722757 0.189696520734072 0.178681161910199 1 0|1 /|+ 4898137 4898729 4898556.222 4897341 4898956 + gene protein_coding_gene FALSE TRUE AT1G14340.1 RNA recognition motif (RRM)-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G01210.1); similar to hypothetical protein [Solanum demissum] (GB:AAT40482.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.414617687906264 4.62867635450627 0.000751100357593342 1 5.06249064486094 13.3140552461937 0.414617687906264 0.0629719383144514
AT1G04960_at 6.99445978101804 7.28936099947544 7.89930851451896 7.78491033386633 8.26775654345554 7.7690329763546 7.75996195232126 7.357457278259 7.25513657292204 7.11464689309224 7.97882131272057 7.34350888157509 7.52451305471623 7.76497745337566 6.9485686266982 7.90863420387226 7.56571617082626 7.66859470665947 7.06802206826501 0.171452943637804 0.171833559015404 0.178799922105477 0.170157197385863 0.171513621881718 0.172467405213434 0.166870533745206 0.178418935521974 0.175286316834873 0.174315824258138 0.169788902915681 0.165111657854498 0.166717907265002 0.168870091548432 0.17979038980294 0.162437151579721 0.169887201969331 0.174532871836679 0.164593508579772 1 1|0 -|/ 1408024 1409553 1408693.556 1407800 1410867 - gene protein_coding_gene FALSE TRUE AT1G04960.1|AT1G04960.2 similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G27000.1); similar to unknown [Striga asiatica] (GB:ABD98037.1); similar to Os05g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054821.1); contains InterPro domain Protein of unknown function DUF1664; (InterPro:IPR012458) 0.510961856246395 4.62803606651977 0.00075187846664857 1 5.06160578911217 15.0072070371079 0.510961856246395 0.12368129549237
AT1G73230_at 9.7654883973426 9.87509302664217 9.01878537344513 9.26442633999038 9.39707078105905 9.37419206231965 9.78420393670357 9.87862762613601 9.32962844539483 9.51619235361181 9.20067676984131 9.4810903971571 9.14068040615597 9.10859329026445 9.70094080504865 9.02947937519862 8.80049877113228 9.05394489889211 9.43471624322933 0.0977721001809733 0.098458652847778 0.0997043983106173 0.0953893223764804 0.0997226432984447 0.0993779466557237 0.0970331217865716 0.099252128261517 0.100136715369775 0.0930590298245619 0.0970930322574547 0.0969669149750341 0.0961270759286778 0.0993415320817968 0.0993119749942203 0.095492670209173 0.105476516359652 0.100925755553872 0.0964662411921206 1 1 - 27544187 27544983 27544521.545 27543892 27545605 - gene protein_coding_gene FALSE TRUE AT1G73230.1 nascent polypeptide-associated complex (NAC) domain-containing protein similar to nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G17880.1); similar to transcription factor homolog BTF3-like protein [Lotus japonicus] (GB:CAE45592.1); similar to putative transcription factor BTF3-like [Solanum tuberosum] (GB:ABB87130.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715) -0.399796099518274 -4.62677620053611 0.00075341199552602 1 5.05986449228941 18.8529028279331 -0.399796099518274 0.0494924019111589
AT1G72540_at 2.63059258920639 2.48410873463688 4.89858607741376 4.10310721420244 2.17759188140786 2.76371410906792 1.89126984652489 1.76205452030105 2.04465202911357 1.97205993949403 1.90197583680484 2.1196424551416 1.85112307229664 1.53736227101931 1.65485047407825 1.84347754232687 2.51229147581041 1.73913483583628 1.85283906415929 0.235767659657042 0.240301351681837 0.267847028021248 0.275392507952925 0.228656260707507 0.233569197805775 0.235855890591193 0.23056357288967 0.232576387159798 0.232392041590806 0.229974811381698 0.235742854249748 0.242564622534084 0.228656260707507 0.232242209373216 0.228656260707507 0.233514275440587 0.238320921474736 0.229343888251611 1 1 - 27318649 27319230 27318899.545 27318594 27320331 - gene protein_coding_gene FALSE TRUE AT1G72540.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G05940.1); similar to Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum] (GB:AAP03880.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.616104316173836 4.62640003648235 0.000753870506409286 1 5.05934453228615 4.76462774976344 0.616104316173836 0.174303077231044
AT2G23310_at 6.94845840443565 7.36947507825302 6.73221815667214 7.0668772515208 7.85433768627967 7.28883196678969 6.84208124863321 6.22338666713437 4.37428068483118 5.43772319028925 5.93778244073778 6.25685669768234 5.88305272795709 5.79947947696093 6.0955344289006 5.33647533991302 6.34539373813023 5.49958003952322 5.37044385477035 0.260689850831916 0.243509322409367 0.256610096714967 0.248359642597575 0.24872615549339 0.250363790841153 0.257300754079537 0.27713791599905 0.308504438805668 0.246272214202458 0.248333686689886 0.250435336234497 0.252106961856695 0.257080987442855 0.249301919061251 0.248676395660316 0.261152527776345 0.272664869106966 0.252409054566695 2 2 + 9924790 9925813 9925077.727 9924600 9926338 + gene protein_coding_gene FALSE TRUE AT2G23310.1|AT2G23310.2 ATRER1C1 (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1C) Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B. Identical to Protein RER1C (AtRER1C) (RER1C) [Arabidopsis Thaliana] (GB:Q9ZWI7;GB:O22177); similar to ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) [Arabidopsis thaliana] (TAIR:AT4G39220.1); similar to putative endoplasmic reticulum retrieval protein [Capsella rubella] (GB:AAO23327.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.611584683481783 4.62508998810396 0.000755469634278837 1 5.05753350284051 12.5182509430594 0.611584683481783 0.172346411950690
AT3G55800_at 12.0332402444369 12.1514709052624 11.8415924777634 11.7880900020242 11.6102310396460 11.6140003136329 12.9315051373108 13.1219848505503 12.8274943132544 13.0686449575549 12.9919343122776 13.1589665934429 12.9028836021074 13.0001322313106 13.1543620991293 13.0461584592894 12.7554356815813 12.8753283704305 12.8690068339733 0.0591583868643803 0.0566097046991852 0.0573854095435905 0.0577225270170082 0.0578053239374963 0.0582692099632108 0.0565530777708824 0.0580957812879898 0.0582908384828882 0.0564758518343954 0.0566698202175882 0.0564685540218559 0.0569211607998539 0.0588205193431975 0.0584294528934923 0.0564685540218559 0.0595535332448352 0.0571992695149299 0.0572097667206805 3 3|0 +|/ 20721601 20722373 20722040.1 20720365 20722619 + gene protein_coding_gene FALSE TRUE AT3G55800.1 SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. Identical to Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) [Arabidopsis Thaliana] (GB:P46283); similar to fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative [Arabidopsis thaliana] (TAIR:AT1G43670.1); similar to Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) (GB:O20252); contains InterPro domain Inositol phosphatase/fructose-1,6-bisphosphatase; (InterPro:IPR000146) -0.391068512844146 -4.62451912447897 0.000756167583128566 1 5.05674424059955 25.0901971398069 -0.391068512844146 0.0398919088200522
AT3G24430_at 10.2291908534814 10.2828314350984 9.64331820726189 9.74592446983621 9.88043277852728 9.5982668422776 10.9474956585085 10.8220559688071 10.6743470167789 10.6346527799738 10.5898512870434 10.8804535570879 10.5011627675255 10.7543067540746 10.7659660002031 10.8438297365226 10.1602395484826 10.6234265132322 10.4919332723347 0.0859706439948436 0.0840891874667974 0.0903634060608991 0.0887536841788792 0.0849273079281187 0.0975518399515458 0.0861879905409826 0.084564992689513 0.0900148167191631 0.084478925065303 0.0860717971299862 0.0856668467464455 0.0840891874667974 0.0884267956198265 0.0846189293982376 0.0862482805280025 0.093221109443516 0.0889653238500233 0.0857935715942474 3 3|0 -|/ 8868738 8869934 8869377.375 8868590 8872208 - gene protein_coding_gene FALSE TRUE AT3G24430.1 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding encodes a MRP-like protein with a nucleotide-binding domain. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19540.1); similar to Os01g0719700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044086.1); similar to Predicted ATPase, nucleotide-binding (ISS) [Ostreococcus tauri] (GB:CAL57875.1); contains InterPro domain Protein of unknown function DUF59; (InterPro:IPR002744); contains InterPro domain Mrp; (InterPro:IPR000808) -0.406907203502862 -4.61815668312493 0.000763992524782778 1 5.04794389379603 20.7637972985001 -0.406907203502862 0.0570708171455225
AT4G12880_at 6.62598696209548 7.22586185237506 5.09720549549623 5.51493624872601 6.16053469118908 6.24848700888259 9.29563998081553 9.45330670590092 7.46090161320999 8.18514510065992 9.67781768641851 9.93527249497844 9.41875802149135 9.33407586651283 9.72451707364803 8.89077462987424 8.14077231754683 9.38944613091128 8.24578183145566 0.269037639907361 0.259024714511009 0.269740830489154 0.271346286214580 0.263429115735104 0.27172246002116 0.258076541033897 0.272566898201148 0.260430874731832 0.256446042335209 0.258807276891562 0.271965551861479 0.262028792181663 0.275864398868542 0.257749639502423 0.256446042335209 0.265745996429108 0.271449480950798 0.256446042335209 4 4|0 -|/ 7544637 7545192 7544924.9 7544379 7545325 - gene protein_coding_gene FALSE TRUE AT4G12880.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G15350.1); similar to lamin [Brassica oleracea] (GB:CAA65749.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.522460792496216 -4.61656647889037 0.000765961543111765 1 5.04574328298815 15.5916809312424 -0.522460792496216 0.130302608882607
AT1G55805_at 7.51650918744598 7.70734507450674 6.79009661786318 6.8281398904335 7.15871590613123 7.42714491374424 7.72621819202533 8.093105458557 7.56211584353229 7.69513819508346 7.49457161618948 7.96941078289862 7.48445292656951 7.0245762808297 7.6432648265863 7.55686503100519 7.41299553491848 7.52391581480739 7.81769721152252 0.170965386634579 0.183251542604101 0.172058697262708 0.179075863572755 0.169546874479136 0.169546874479136 0.175074076786522 0.183927709577309 0.193393152303027 0.169546874479136 0.184890487093428 0.172576558573802 0.169546874479136 0.176380390749889 0.181236588075068 0.170557404904951 0.1774969512934 0.174617551468632 0.170769644020398 1 1 - 20862622 20862923 20862757.545 20862389 20863105 - gene protein_coding_gene FALSE TRUE AT1G55805.1 BolA-like family protein similar to ATSUFE/CPSUFE/EMB1374 (EMBRYO DEFECTIVE 1374), enzyme activator/ transcription regulator [Arabidopsis thaliana] (TAIR:AT4G26500.1); similar to unknown [Glycine max] (GB:AAO23079.1); contains InterPro domain BolA-like protein; (InterPro:IPR002634) -0.443831980538947 -4.61272298782844 0.000770742708267507 1 5.04042265974662 15.0086129143076 -0.443831980538947 0.0855747919367505
AT2G25870_at 7.02393434719501 6.7711598349893 6.80894194036875 6.35701050984648 6.32296540077593 6.17102872116009 7.54104527463395 7.59722562925676 6.68087279712573 6.75727178450851 6.75520344920332 6.74193812707474 6.43126673014275 6.46383312420308 7.18603246204802 6.69517848381167 6.4655153313555 6.5378775550265 6.82639262754786 0.161740042743503 0.155287307755445 0.163455797364196 0.160365529080739 0.159919485500987 0.175736911773480 0.161484285394185 0.164192516705666 0.166556244744744 0.158760013351371 0.156682880271820 0.155802007582846 0.157799442246802 0.160089632044032 0.161767122347039 0.156911864774488 0.167531166864209 0.161071089143701 0.166074713066989 2 2 + 11038890 11041303 11040270.882 11038193 11041532 + gene protein_coding_gene FALSE TRUE AT2G25870.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD86945.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Cof protein; (InterPro:IPR000150); contains InterPro domain Protein of unknown function UPF0054; (InterPro:IPR002036); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) -0.456797353508390 -4.61271752556356 0.000770749525436787 1 5.04041509641825 13.5313896544044 -0.456797353508390 0.0938935917825938
AT1G16470_at 8.82662091063181 8.95783532135094 9.3755717561395 9.46098504935523 9.05892578666695 8.81902778796445 8.82072523388886 8.6996251671425 8.25217352506856 8.0324036636406 8.69869270184172 8.71480712205756 8.38071668193007 8.79839455037213 8.427118993708 8.48026130976976 8.53234933925325 8.5919360785699 8.08938664856868 0.187580862596947 0.182650399788162 0.192816718510538 0.195123896441237 0.182051766860021 0.196888606593356 0.189942216143823 0.184581797558101 0.198855876661663 0.191633812880103 0.185703669344329 0.179234546270257 0.185171122418805 0.192504285829416 0.185942402810412 0.181446816226950 0.189787923367682 0.196770332613675 0.188626703461291 1 1|0 +|/ 5623426 5625401 5624392.667 5622780 5625637 + gene protein_coding_gene FALSE TRUE AT1G16470.1|AT1G16470.2 PAB1 (20S proteasome alpha subunit B1); peptidase Encodes 20S proteasome subunit PAB1 (PAB1). Identical to Proteasome subunit alpha type 2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) (PAB2) [Arabidopsis Thaliana] (GB:Q8L4A7;GB:O64532); Identical to Proteasome subunit alpha type 2-A (EC 3.4.25.1) (20S proteasome alpha subunit B) (Proteasome component 3) (PAB1) [Arabidopsis Thaliana] (GB:O23708;GB:Q94EI0); similar to 20S proteasome alpha subunit B, putative [Arabidopsis thaliana] (TAIR:AT1G79210.3); similar to unknown [Solanum tuberosum] (GB:ABA81880.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.402902960769933 4.61221829522939 0.000771372856932056 1 5.03972381522615 17.3537592314494 0.402902960769933 0.0538222062030461
AT1G66900_at 9.06977687447583 9.25534882364587 9.30047674593821 9.5568913393329 9.65647725163802 9.58396816695402 9.5131384052830 9.42548706325272 8.5114486779478 8.3019741214372 8.78640701072168 8.89208763874002 8.83418028073009 9.0006128487046 8.73025168097447 9.27712997512186 9.3641356692628 8.9034971778052 8.28953241533063 0.136695609873848 0.131762950873692 0.141951239045924 0.13222654770182 0.133194404286124 0.136318952457805 0.135462571669542 0.134735983750479 0.148633632418664 0.138546104070044 0.138525910480117 0.131762950873692 0.137233877829104 0.142644638013925 0.134931181636935 0.131762950873692 0.133220319564391 0.140030388958373 0.139016979232971 1 1|0 +|/ 24963420 24964822 24964238.2 24962997 24965279 + gene protein_coding_gene FALSE TRUE AT1G66900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38220.3); similar to Os01g0689800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043924.1); similar to C (GB:BAD82560.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.407200815660241 4.60724326032767 0.000777613676574265 1 5.03283257986909 18.0907903455631 0.407200815660241 0.058205494156
AT1G55020_at 5.37856032440033 5.72763728742947 5.81983312240724 5.6418046681549 4.78055038065537 5.27486099159328 8.33726090283862 8.65466153705751 7.23171663097597 8.09881193409007 7.62445248636191 8.40679843578343 8.2664591027731 8.10111979006137 7.39099937145083 8.61274660809118 7.838309781151 8.51476947879521 7.05204940549389 0.265442068243788 0.246644107512504 0.248538834823396 0.246371701693485 0.264541961239563 0.264577606567942 0.244960689338039 0.24262992272074 0.241561099956455 0.235057571380837 0.235057571380837 0.235057571380837 0.235057571380837 0.239348195525182 0.241216924154696 0.235057571380837 0.242705828515614 0.235057571380837 0.237127446747633 1 1 + 20533243 20533770 20533456.273 20529375 20533940 + gene protein_coding_gene FALSE TRUE AT1G55020.1 LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G22400.1); similar to lipoxygenase 1 [Brassica napus] (GB:AAO03558.1); similar to bacterial-induced lipoxygenase [Gossypium hirsutum] (GB:AAK50778.3); similar to lipoxygenase [Corylus avellana] (GB:CAD10740.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.505835081970128 -4.60695539954689 0.000777976399361056 1 5.03243371585908 13.9795542544813 -0.505835081970128 0.122200979566463
AT2G30780_at 2.64104000008627 3.12671338078262 3.00258286110167 3.22004434360129 3.63238372241109 3.35247860824381 3.05816356823155 3.06332102639137 2.5399968821182 2.28960511115377 3.02315900602251 2.90326896927694 3.36026380050758 2.76334938847316 2.88903329601695 3.04267999799328 3.42931415626217 2.97949602132701 2.46771959181001 0.210589098790375 0.207124043534398 0.204852332666923 0.212364150991513 0.204852332666923 0.212425072871492 0.207565034098554 0.214614759653494 0.212638406760548 0.212419460685672 0.206356828863721 0.208465330547016 0.211516820548846 0.209001301479965 0.20589516485189 0.206967615563013 0.217651659665473 0.208881887816246 0.21463570180109 2 2 + 13124609 13125035 13124823.636 13123551 13125885 + gene protein_coding_gene FALSE TRUE AT2G30780.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G48000.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD33237.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.472971470545402 4.60557474048417 0.000779718593735031 1 5.03052045757177 5.87772149277901 0.472971470545402 0.104054878550931
AT2G27180_at 2.86444851344985 2.83520546897806 3.46701358028581 3.53427812272874 3.42808274947995 3.42936291677155 2.50592412854476 2.68224375420552 3.52797613203031 2.58252899574534 2.52121765645526 2.67518913834469 2.81018159099377 2.76800064747953 2.24173412126599 3.06733495876835 3.71930380068791 2.98869729581306 2.35825691885488 0.235771725196751 0.245931634510079 0.252540480772719 0.259249182523772 0.239190559760540 0.255381717712087 0.23713860470286 0.234306173570055 0.239982342367366 0.245499284570261 0.243715557977001 0.237017046001068 0.234306173570055 0.241516333821008 0.263818199355846 0.234306173570055 0.243891111684245 0.241151341893522 0.235253425479106 2 2 + 11627575 11628021 11627844.545 11627311 11628252 + gene protein_coding_gene FALSE TRUE AT2G27180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11690.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99907.2); similar to Os12g0621400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067301.1) 0.384382797518928 4.60492365114309 0.000780541599552479 1 5.02961809248452 5.92925894602365 0.384382797518928 0.0330484225199932
AT4G27450_at 10.4696766638730 10.6982777971954 10.8212447409696 10.6179961963215 11.3871180272925 11.0073143054957 9.66793706365445 9.80463831445624 11.3803028592026 10.9717548288154 9.43538358066733 8.78594427019167 9.90742648948631 9.59004152419937 7.97372835638065 10.1727059739628 10.0954486633692 9.82810697156803 11.1406902751694 0.129530686851954 0.127537566233746 0.133415386876168 0.139514589090891 0.130946877321340 0.137758413041945 0.133116651512960 0.123051699465770 0.134641990612623 0.122367937667141 0.137811067786703 0.143260280101585 0.133124847501420 0.137502428336242 0.133489018212330 0.126156513410445 0.142715189683277 0.129916081212361 0.122367937667141 4 0|4 /|- 13727671 13728361 13728002.625 13727493 13728892 - gene protein_coding_gene FALSE TRUE AT4G27450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) -0.446182617304623 -4.60447039168126 0.00078111507930168 1 5.02898986314206 20.8781991635526 -0.446182617304623 0.0876460879191499
AT1G79110_at 5.87862346563086 5.59459549117494 4.41306904580621 4.08619019104267 3.74390601292941 3.58346931386277 3.71427072960342 3.93082573703013 4.25906095687473 3.87208104262719 3.66430600935198 3.84933795200103 3.958195254498 3.98689144703043 3.85165587817671 3.70641442451512 3.47514333702696 3.24526483892362 3.23245405373489 0.224625757666062 0.226505674294901 0.204286415702314 0.203820070264323 0.204069792919155 0.209535956342328 0.204716237332061 0.208691497991594 0.207117023367172 0.205415151871804 0.202205943894112 0.215113173865399 0.207649544432735 0.208203787237282 0.213795640673249 0.207559335893896 0.211129595792744 0.210626607650808 0.207412641599755 1 0|1 /|+ 29765022 29765447 29765260.5 29764050 29765597 + gene protein_coding_gene FALSE TRUE AT1G79110.1|AT1G79110.2 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G12920.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE88778.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.446817211669014 -4.60118159870174 0.000785289478608098 1 5.02443045711744 8.12062699526976 -0.446817211669014 0.0882676643464099
AT2G37990_at 7.22552448108203 6.91661237840141 6.55607025958106 6.30932066864517 6.79793034438455 6.49491104680704 7.30485957526664 7.43710161508926 4.55381167085610 5.49944449614101 4.172195851657 5.22677130978428 4.85261129622959 4.45706451368295 5.19932207422475 4.95616781408622 5.16538110676697 4.82294679595755 5.16065827927568 0.239818702093881 0.239818702093881 0.240598471670381 0.244846271848204 0.245600958690323 0.239818702093881 0.24807972604941 0.242902590907316 0.246713679215663 0.239818702093881 0.243593125006423 0.245365870080248 0.241174314009172 0.242018176097554 0.242187122975921 0.244046810676823 0.253513265715809 0.244239866185165 0.248538021126482 2 2|0 +|/ 15908969 15910082 15909556.111 15907713 15910296 + gene protein_coding_gene FALSE TRUE AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein Identical to Ribosome biogenesis regulatory protein homolog [Arabidopsis Thaliana] (GB:Q9SH88;GB:Q56WN3;GB:Q8LA50); similar to Os04g0685100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054315.1); similar to H0913C04.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86168.1); contains InterPro domain Ribosomal biogenesis regulatory protein; (InterPro:IPR007023) -0.448106826365486 -4.59981682027212 0.000787028650707258 1 5.02253785787211 11.8442225015186 -0.448106826365486 0.0891896102518345
AT4G18800_at 5.1485634637442 5.60021943541612 5.22641648048621 5.25312117177584 5.52840298656509 5.16164294097863 4.00145206422315 3.98636450004183 3.93914417443258 3.39506518597348 4.23308296252416 4.68173870729637 3.60447024270999 3.89579405510166 3.89466640356299 3.94004746223367 3.36803410460092 3.55588066918243 3.38059960479312 0.223525681579424 0.227512582198973 0.217138036872783 0.226189818115837 0.219635784539012 0.220955634871874 0.225719627807752 0.226251701740039 0.219596998797541 0.214098547776113 0.217354718458634 0.214098547776113 0.214098547776113 0.218637729748139 0.214098547776113 0.216341114592450 0.222339009322719 0.224694451175932 0.214098547776113 4 4 - 10320193 10321252 10320509.727 10319873 10321562 - gene protein_coding_gene FALSE TRUE AT4G18800.1 AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d); GTP binding similar to AtRABA1c (Arabidopsis Rab GTPase homolog A1c), GTP binding [Arabidopsis thaliana] (TAIR:AT5G45750.1); similar to putative GTP-binding protein [Gossypium hirsutum] (GB:AAT64010.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.466678683298456 4.59762834650118 0.000789825944291411 1 5.01950233803885 8.7224315375545 0.466678683298456 0.100825220879658
AT4G38160_at 6.87116574470609 7.17720278845443 6.02885581341506 6.14279532736925 6.82735033796572 6.78641537781527 6.62633830784383 6.81922962805539 6.66169614173967 7.07613152498044 6.14176905418798 7.15712249481015 6.49295663469673 6.10257984563568 7.2097868548488 6.65922699358735 6.16664873710102 6.42435087916442 7.1060926717505 0.187041820156067 0.187775559533737 0.197210733871479 0.190681064761810 0.181346332316887 0.189463663314443 0.177421091120626 0.185947478076877 0.185526080822218 0.174780036421255 0.190651554978048 0.188569380771971 0.186936884269763 0.187077428501979 0.185169160323976 0.184210284843550 0.197626509871247 0.186409308973316 0.174780036421255 4 4 + 17902825 17903382 17903071.818 17902267 17904294 + gene protein_coding_gene FALSE TRUE AT4G38160.1|AT4G38160.2 PDE191 (PIGMENT DEFECTIVE 191) similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to Os08g0515800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062235.1); similar to mTERF [Medicago truncatula] (GB:ABE87961.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690); contains InterPro domain Rad51, N-terminal; (InterPro:IPR010995)|similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to Os08g0515800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062235.1); similar to mTERF [Medicago truncatula] (GB:ABE87961.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.41539908126323 -4.5962412586542 0.00079160432637374 1 5.01757795526014 13.4060584821586 -0.41539908126323 0.0660161280732496
AT1G26440_at 6.79627808831713 6.70287418044525 7.3008797684631 7.34135907862308 8.0557790109036 7.03636151454095 5.55894991214594 4.91395813867653 6.41121894393607 5.99381345908315 6.33097077678277 5.96009338779543 6.46517571872085 6.65624105171607 5.09896409623933 6.60298063504071 5.90532573495121 6.42098685637295 6.3069451653439 0.207970907584071 0.200195308803472 0.21792025157488 0.212852067469515 0.209267103902002 0.216660186098380 0.200195308803472 0.203869622495985 0.221602218592515 0.202056026517577 0.200195308803472 0.21063002946833 0.20248252723579 0.212216634698902 0.208926636788346 0.207433295511616 0.250951341286423 0.202855103035986 0.208150854750797 1 1|0 -|/ 9144126 9144837 9144519.9 9143954 9146037 - gene protein_coding_gene FALSE TRUE AT1G26440.1|AT1G26440.2|AT1G26440.3|AT1G26440.4 ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5) Identical to Ureide permease 5 (AtUPS5) (UPS5) [Arabidopsis Thaliana] (GB:Q93Z75;GB:Q8LBT6;GB:Q9FZC9); similar to UPS2 (UREIDE PERMEASE 2) [Arabidopsis thaliana] (TAIR:AT2G03530.2); similar to allantoin permease [Phaseolus vulgaris] (GB:AAS19930.1); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834)|similar to ATUPS4 (Arabidopsis thaliana ureide permease 4) [Arabidopsis thaliana] (TAIR:AT2G03520.1); similar to allantoin permease [Phaseolus vulgaris] (GB:AAS19930.1); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834) 0.691673094658923 4.59069974162043 0.000798751239758248 1 5.00988662279656 12.9220140306762 0.691673094658923 0.209502615147127
AT3G13430_at 4.99532628355487 4.95933850081434 4.64779010545446 5.13613058846352 5.37098003581105 5.01883538379563 3.87421530327470 3.57421920818543 4.0701432576559 3.3211543085446 4.12275054116352 3.5783837197269 4.02922105736188 3.89982058962058 3.35155030301111 4.11465435078079 4.011624712281 3.64986731988572 3.26195818686548 0.21763551094188 0.217833051641083 0.217612401798673 0.214375451588269 0.21210976211366 0.22433933099058 0.215586437499000 0.212599662144684 0.235060498360695 0.214332144120511 0.21210976211366 0.21574130598795 0.21210976211366 0.223753242462255 0.217711790409649 0.214585285731280 0.221659391392389 0.220262778382970 0.21210976211366 3 3 + 4368125 4368664 4368349.182 4367288 4368886 + gene protein_coding_gene FALSE TRUE AT3G13430.1|AT3G13430.2 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G55530.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.493154013815387 4.58638584067538 0.000804361874666863 1 5.00389552350937 8.39501408879472 0.493154013815387 0.116574515689177
AT1G52150_at 6.23731462808256 6.2239967102973 6.93132577785274 6.3833977079621 7.46463956236138 7.09182192193973 6.26944615646687 5.52982945438845 5.58856902285957 6.7002885493433 6.506990017746 6.41654696869065 6.42899567509894 6.71115053590213 6.36785093291397 6.94830613601234 7.14016094662802 6.44967388725123 6.65212987974548 0.167006568599459 0.166799120030307 0.174844256993137 0.175566489446302 0.166815212880663 0.175067529859611 0.170381604796782 0.186216811646047 0.191062280879824 0.170371467582907 0.166799120030307 0.170965431190367 0.175234331371025 0.166799120030307 0.171200142886616 0.169351870234656 0.179918147105722 0.175826328949386 0.176260321076619 1 1|0 -|/ 19413597 19414388 19414145 19413380 19418347 - gene protein_coding_gene FALSE TRUE AT1G52150.1|AT1G52150.2|AT1G52150.3 ATHB-15 (INCURVATA 4); DNA binding / transcription factor|ATHB-15 (INCURVATA 4) Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. similar to REV (REVOLUTA), DNA binding / lipid binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60690.1); similar to ATHB-8 (HOMEOBOX GENE 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G32880.1); similar to PHB (PHABULOSA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G34710.1); similar to class III HD-Zip protein 5 [Populus trichocarpa] (GB:AAX19054.1); similar to TPA: TPA_inf: class III HD-Zip protein CNA1 [Medicago truncatula] (GB:DAA05767.1); similar to class III HD-Zip protein 6 [Populus trichocarpa] (GB:AAX19055.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.605098204383913 4.58383968101281 0.000807692839534732 1 5.00035795281704 12.9839074256755 0.605098204383913 0.171876337499934
AT1G06690_at 8.46688577052347 8.68863646147079 8.06877115787072 8.21702109508862 8.25846030452729 7.67170659965051 9.38194789461174 9.18615831731593 8.61460749993592 8.93495350213638 8.3961376422341 8.67614391498383 8.36081836731983 8.71276715279395 8.54242155602057 9.1469196094313 8.77421256986592 8.65718886189594 8.75157538084122 0.134713232770668 0.130969897239636 0.14761781640614 0.132506465432978 0.128606569409111 0.150443187090123 0.133254948169555 0.131711384528569 0.133841812093802 0.134997788639082 0.13084459950875 0.127340809629831 0.134859260699130 0.132059731127192 0.139345371073816 0.127340809629831 0.131190388970864 0.144011504832729 0.142174828573977 1 1|0 -|/ 2049772 2050962 2050414.625 2049601 2052153 - gene protein_coding_gene FALSE TRUE AT1G06690.1 aldo/keto reductase family protein similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT5G53580.1); similar to Os07g0143000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058875.1); similar to aldo/keto reductase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19952.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.492818286674598 -4.58328575414811 0.000808419423831064 1 4.99958819408296 17.2051342852771 -0.492818286674598 0.116573208156798
AT4G36920_at 4.06136464716841 4.08224422874525 3.58802477888379 3.21018626194362 3.50348416305974 3.70431405172841 2.39461946095497 2.45476034898817 2.97883290732831 3.58586654636843 4.34660187548504 4.22410719945047 3.67100284992811 4.06547433546553 4.2338272159453 3.38628139306173 3.47982448967183 3.49231321322231 3.2283434567603 0.235661166822828 0.224901994854135 0.221970811557983 0.225120129007358 0.233443925620065 0.231115266694428 0.236878585654287 0.225508068643113 0.228801482551846 0.226105440117266 0.224128156881303 0.221970811557983 0.22675346061459 0.229059384603931 0.238974005356521 0.226110416386287 0.225649228308356 0.230783617943606 0.226552304047205 4 0|4 /|+ 17402371 17403067 17402773.125 17400844 17403329 + gene protein_coding_gene FALSE TRUE AT4G36920.1 AP2 (APETALA 2); transcription factor Encodes a floral homeotic gene, a member of the AP2/EREBP (ethylene responsive element binding protein) class of transcription factors and is involved in the specification of floral organ identity, establishment of floral meristem identity, suppression of floral meristem indeterminancy, and development of the ovule and seed coat. AP2 also has a role in controlling seed mass. Dominant negative allele I28, revealed a function in meristem maintenance-mutant meristems are smaller than normal siblings. AP2 appears to act on the WUS-CLV pathway in an AG independent manner. Identical to Floral homeotic protein APETALA2 (AP2) [Arabidopsis Thaliana] (GB:P47927;GB:Q8L7P9); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G67180.1); similar to AP2-like transcriptional factor [Brassica rapa] (GB:AAX47049.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.425668288574732 4.58306358277597 0.000808711038559822 1 4.99927944122072 6.93826309685794 0.425668288574732 0.0748643901197756
AT2G22660_at 9.53718652480757 9.4224338569196 9.60590078595855 9.70688009494577 9.76501406375004 9.6322814340881 8.63257682410262 8.33003358454242 9.10355359658229 9.12077268034058 9.24834212054814 9.03168807336637 9.327612918165 9.16165910394174 8.83725767752844 9.38905314681292 9.49376127419546 9.48381089024924 9.14345927324877 0.097854173725186 0.099324474632241 0.0985853136859332 0.101185382811274 0.107120495604941 0.101426583113492 0.102154561515722 0.106210024607695 0.110455323086832 0.101474872942035 0.102767772174336 0.097854173725186 0.0986028924198447 0.104891752861332 0.109525412125820 0.101818280513272 0.100889166978117 0.097854173725186 0.0998570289652861 2 2 + 9637368 9637857 9637617.636 9634488 9638161 + gene protein_coding_gene FALSE TRUE AT2G22660.1|AT2G22660.2 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G37900.1); similar to Protein of unknown function DUF1399 [Medicago truncatula] (GB:ABE84186.1); contains InterPro domain Protein of unknown function DUF1399; (InterPro:IPR009836) 0.41050718215146 4.58246305285072 0.000809499828044087 1 4.99844483909407 18.5136600631351 0.41050718215146 0.0629964991944873
AT2G25760_at 7.41228064648375 7.0497192088309 7.40417356452766 7.25836541997327 8.12233236420112 7.62846474284824 7.12179097076884 6.80379501967097 6.27556626102744 6.18110424366737 6.46625357850463 6.46803533706983 6.93758726607604 6.83461632396392 6.54644742577111 6.99115163876463 7.18827594906779 6.34153835384824 6.21022647671972 0.159034841571147 0.158177240987365 0.160230337329602 0.160112506778539 0.158992079403839 0.159419482359818 0.160643697831006 0.160405867537039 0.164987540483984 0.163380645288819 0.158974878588345 0.158743695427048 0.156623308899408 0.158395952610785 0.161788566436051 0.156623308899408 0.165363915611803 0.158939007953335 0.163757863353141 2 2|0 -|/ 10992353 10994298 10993292 10991886 10996002 - gene protein_coding_gene FALSE TRUE AT2G25760.1|AT2G25760.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G13670.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18190.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G03940.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD87518.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABE93337.1); similar to putative casein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT44311.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.502938400888693 4.58245184807207 0.000809514553087234 1 4.99842926637584 13.8221338561322 0.502938400888693 0.122090950019160
AT1G71940_at 4.64981167319445 5.23789006957371 5.24752481645814 5.42409111832553 5.62423701141833 5.57520788039804 5.05701093959514 5.04004705199608 3.78532378146764 3.71158928025629 4.15691885943606 4.29091428547152 4.35305555932659 4.13993337401862 4.11853228628314 3.89618148717619 4.33426866255882 3.91081195554289 3.5189581880621 0.261241658356424 0.254909893452693 0.263844348452209 0.260415204500837 0.271135985210242 0.263913967003342 0.260249427628892 0.256306535315853 0.262706754363017 0.255126966422526 0.256430968164576 0.254909893452693 0.254909893452693 0.257650544143532 0.272688296330662 0.254909893452693 0.265437864450994 0.258249303911543 0.261584150420807 1 1|0 +|/ 27082836 27083563 27083251.9 27082193 27083892 + gene protein_coding_gene FALSE TRUE AT1G71940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09580.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE85136.1); similar to Os03g0703900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051019.1); contains domain UNCHARACTERIZED (PTHR12677) 0.474847624262441 4.58062607533209 0.000811917706245066 1 4.99589146965244 9.1429946411143 0.474847624262441 0.106636431059331
AT3G06680_at 7.19310186536575 7.09023739482659 6.3741197532433 6.48729249367024 6.44256389340986 6.26126467508144 6.90355108274258 7.40684965362529 7.03785398288932 6.861262293157 6.55099457840754 7.60508987943277 6.56375005338499 6.7534564442501 7.85057955851002 6.69413235658685 5.7124226158628 6.09397373882731 6.75757175953453 0.183597024556495 0.180781678832021 0.187021435328874 0.186529509988853 0.182500814814676 0.190097972591760 0.189061699577929 0.185089557029813 0.178919659783392 0.190080859764822 0.184712160114961 0.183325136723513 0.189751988550164 0.179068522773379 0.181516142750392 0.185520455542674 0.189658810273726 0.189242634524548 0.187468908194749 3 3|0 -|/ 2114409 2114689 2114581.2 2114260 2114885 - gene protein_coding_gene FALSE TRUE AT3G06680.1 60S ribosomal protein L29 (RPL29B) Identical to 60S ribosomal protein L29-2 (RPL29B) [Arabidopsis Thaliana] (GB:Q84WM0;GB:Q9M7X5); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G06700.3); similar to Ribosomal L29e protein [Medicago truncatula] (GB:ABE83198.1); contains InterPro domain Ribosomal L29e protein; (InterPro:IPR002673) -0.457318785328997 -4.57910616212553 0.00081392399917673 1 4.99377837933919 13.576678892338 -0.457318785328997 0.0962856035973722
AT3G01160_at 4.06281355587362 4.52302591925481 3.67169130359542 3.76435236924001 3.4745735927461 3.30929101310832 3.49981004171840 4.17562327824665 3.30155763405019 3.69862975840812 2.60097823764334 3.30703018585046 2.64875834690013 2.73098406720267 3.24047317542014 2.82308238088023 2.47379221943864 3.27091449382059 3.41751274061667 0.211622081384548 0.220495863923874 0.203542972885505 0.207661221434003 0.201795614957281 0.206548603448473 0.215399841925662 0.209328921142328 0.20765565370196 0.203230961429546 0.205731690070776 0.205647501574754 0.207130936924672 0.201795614957281 0.203532352156672 0.203193426351728 0.211085034169973 0.216205076577210 0.205800910271203 3 3 - 54697 55290 55006.364 54548 57469 - gene protein_coding_gene FALSE TRUE AT3G01160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90093.1); contains domain RNA-binding domain, RBD (SSF54928); contains domain UNCHARACTERIZED (PTHR12202); contains domain UNCHARACTERIZED (PTHR12202:SF5) -0.547953100865688 -4.57882464706571 0.000814296172512036 1 4.99338695404167 6.98993180893268 -0.547953100865688 0.145244662251129
AT4G00180_at 5.1872195027157 5.41898752635407 4.49199315056303 4.32040896682961 5.78147195358999 4.94849792289 6.14640747992218 5.94386973321363 6.50554433513261 6.26268159515641 5.97783500309781 6.23337801881455 6.0588325372188 6.17630170493781 5.98543644989117 5.7443977269215 5.47367419517558 5.96086815508082 6.14780906980263 0.208781085944519 0.222305436424907 0.224987228247107 0.216959337224447 0.224634789153654 0.221807270689532 0.217736841747079 0.217152867166937 0.223173849971731 0.213410623731803 0.207556804067548 0.212845163349850 0.210335641290675 0.212305473238716 0.207129622397722 0.208614205267707 0.213307332450693 0.214455023761855 0.219028368764693 4 4|0 -|/ 72812 74786 73871.333 72552 75384 - gene protein_coding_gene FALSE TRUE AT4G00180.1|AT4G00180.2 YAB3 (YABBY3); transcription factor|YAB3 (YABBY3) YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. Identical to Axial regulator YABBY3 (YAB3) [Arabidopsis Thaliana] (GB:Q9XFB1;GB:O81319); similar to AFO (ABNORMAL FLORAL ORGANS), transcription factor [Arabidopsis thaliana] (TAIR:AT2G45190.1); similar to YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus] (GB:AAS10177.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071)|similar to AFO (ABNORMAL FLORAL ORGANS), transcription factor [Arabidopsis thaliana] (TAIR:AT2G45190.1); similar to YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus] (GB:AAS10177.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.571266294110762 -4.57792592148569 0.000815485519466931 1 4.99213725397624 11.4081997664712 -0.571266294110762 0.156518814354607
AT1G75450_at 2.65215116024369 2.95848697283245 3.36886947885472 3.98877566803258 3.69248738522852 3.99923882763196 2.84808422398823 2.70746731105730 3.75826762996423 3.65144344340641 4.54434182394787 3.90343008668168 4.59835816704516 3.35118123378351 4.13237241603441 4.32835564360175 3.99014940595236 4.09774550678314 4.71715870632945 0.259484805899655 0.255006062045890 0.259793235297099 0.261842559298240 0.255006062045890 0.255006062045890 0.263158930199748 0.26013406448769 0.255590108584508 0.255006062045890 0.257069964984719 0.255128122037079 0.255600813561290 0.259282551309373 0.255006062045890 0.255006062045890 0.259189988066038 0.255006062045890 0.257179075857262 1 1 - 28318979 28319917 28319421.545 28318119 28322023 - gene protein_coding_gene FALSE TRUE AT1G75450.1 CKX5 (CYTOKININ OXIDASE 5); cytokinin dehydrogenase This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 5 precursor (EC 1.5.99.12) (Cytokinin oxidase 5) (CKO5) (AtCKX5) (AtCKX6) (CKX5) [Arabidopsis Thaliana] (GB:Q67YU0;GB:Q9FUJ0;GB:Q9FWT3); similar to ATCKX1/CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G41510.1); similar to Os01g0775400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044409.1); similar to Os05g0374200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055371.1); similar to putative cytokinin dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:AAT01339.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Oxygen oxidoreductase covalent FAD-binding site; (InterPro:IPR006093) 0.523373640909284 4.57562982106165 0.000818532416437437 1 4.9889438443997 7.3572109845064 0.523373640909284 0.133150340764540
AT1G75880_at 3.28468547081513 3.56550100236969 2.86323199190891 2.76075705257955 4.25169675874945 3.76426365566145 1.81703485947075 2.66115945327347 2.14395664254541 1.92009697666152 2.34264707514861 3.53571239938807 2.36158305309048 2.4119877401644 3.08674674157602 2.28795316471542 1.95861952676566 2.66816786438884 1.73113210657381 0.22712738276535 0.234557904009181 0.219613904853712 0.214514228159944 0.219523869850094 0.237572909391728 0.218225106045367 0.219938018219410 0.220647210161786 0.218539402691458 0.215984145607657 0.216604380721331 0.215303611571816 0.224738327975044 0.216190768638183 0.216881144331165 0.219185263804942 0.235759986620539 0.216763459599272 1 1|0 +|/ 28495184 28495836 28495552.3 28494104 28496125 + gene protein_coding_gene FALSE TRUE AT1G75880.1|AT1G75880.2 family II extracellular lipase 1 (EXL1) similar to family II extracellular lipase 2 (EXL2) [Arabidopsis thaliana] (TAIR:AT1G75890.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88960.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) 0.61392039431851 4.57461776487129 0.000819879202599204 1 4.98753599434198 5.37774416606102 0.61392039431851 0.176439039517699
AT1G03290_at 8.96452288859303 9.16515751538443 9.35224852242845 9.5188495205886 8.80483633210377 8.78064428644856 7.63042533351748 7.79120162227066 7.73796392163562 7.26773906461416 7.52929914702865 7.39146407478405 7.21624702175895 7.95796803486859 6.97073111963009 8.07817799454246 8.02669129083938 7.83177199310411 7.65633298432363 0.159758935446559 0.167525010433330 0.158889800303758 0.154995233324276 0.154063733205228 0.164125709326218 0.164305812923896 0.158359947424225 0.160299001608326 0.158851087986577 0.159330228812249 0.154611904890385 0.162273208741006 0.154063733205228 0.167617470789753 0.158109392316355 0.168423786293986 0.154788511999837 0.161030511256163 1 1 + 809729 810574 810266.273 807396 810690 + gene protein_coding_gene FALSE TRUE AT1G03290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02880.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77463.1); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.398799834914674 4.57278968869157 0.000822317812144883 1 4.98499255369109 16.3406386650472 0.398799834914674 0.0531828309194713
AT4G35860_at 8.35036682262644 8.38002799753055 8.60393449715963 8.60069973284391 8.7031232564622 8.46944711139797 7.9740381954931 8.62640169309137 7.98620715797266 8.0130234513447 8.9028791876132 8.71888648043521 8.90475034854398 9.08296307084224 8.57277589763187 8.86680987880033 8.36925674564382 8.30811568349475 7.94491943151227 0.161200712109595 0.158511475585494 0.162678077113946 0.159115085271394 0.159303233904431 0.162585533844516 0.157404101346593 0.159755815822702 0.165199428410866 0.163825815021050 0.163251599935041 0.155851591994996 0.153635613373388 0.168618283431921 0.159414495878504 0.156459136136088 0.160971471075909 0.176464361446920 0.163586598582725 4 4|0 -|/ 16987132 16988653 16987859.778 16986843 16989050 - gene protein_coding_gene FALSE TRUE AT4G35860.1|AT4G35860.2 ATGB2 (GTP-BINDING 2); GTP binding|ATGB2 (GTP-BINDING 2) GTP-binding protein ATGB2 similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)|similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.498006893481512 4.57247309639824 0.00082274091308385 1 4.9845520143669 16.8120989176101 0.498006893481512 0.120029712161755
AT1G04240_at 6.55171068171696 6.55432199631628 6.89474477156734 7.04796665118734 7.80196267009799 7.463738724082 7.64300369765097 7.63750084628916 6.87479365173838 7.36867566614472 9.08516807902878 8.2785005623219 8.34824841007139 8.38273946682205 7.85912351975107 7.84110938520227 7.83447065352662 7.69132588041567 8.40203766731229 0.162185575399243 0.150353302802749 0.153014039212418 0.151236304838159 0.149403384364973 0.148870572117841 0.149505559717952 0.153713657856637 0.155842654782393 0.155268195106960 0.159063603026688 0.146348816111471 0.149092161812160 0.150503419138321 0.147742196662077 0.14635618406308 0.153251949529382 0.148185679383120 0.147281013330759 1 1|0 -|/ 1128563 1129264 1128921.556 1128187 1129550 - gene protein_coding_gene FALSE TRUE AT1G04240.1 SHY2 (SHORT HYPOCOTYL 2); transcription factor SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. Identical to Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) (Short hypocotyl) (Suppressor of HY2) (IAA3) [Arabidopsis Thaliana] (GB:Q38822;GB:O04741); similar to ATAUX2-11 (indoleacetic acid-induced protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT5G43700.1); similar to Gbiaa-Re [Gossypium barbadense] (GB:AAQ74955.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.411026157492163 4.57137349622838 0.000824212222674798 1 4.98302178411309 15.0561627913840 0.411026157492163 0.0642658671936957
AT4G25434_at 2.51540192030488 2.75278015404334 3.55213898207987 3.34516455806354 3.16852590656832 3.211556663608 3.14913273136737 3.13464579327425 3.13863331946126 3.32167737402672 3.51542354416677 3.3480730657419 4.00847466811138 3.57128951826864 3.50727674780414 3.61543224421025 3.84555097363355 3.98182947387454 3.45252344171152 0.222166292172564 0.228399151846823 0.225558149388768 0.224070762820879 0.221614294194215 0.224390335519395 0.218901656575224 0.218901656575224 0.225685904945252 0.218901656575224 0.226825520553795 0.224855042709943 0.223037020561601 0.22426483840091 0.218901656575224 0.220986092945479 0.232843541241669 0.221299450435005 0.225169953921161 4 4|0 -|/ 13004171 13005109 13004701.5 13003986 13005873 - gene protein_coding_gene FALSE TRUE AT4G25434.1|AT4G25434.2 ATNUDT10 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 10); catalytic|ATNUDT10 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 10); ADP-ribose diphosphatase/ NAD binding / catalytic Identical to Nudix hydrolase 10 (EC 3.6.1.-) (AtNUDT10) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (NUDT10) [Arabidopsis Thaliana] (GB:Q6NPD7;GB:O65616); similar to ATNUDT2 (Arabidopsis thaliana Nudix hydrolase homolog 2), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT5G47650.1); similar to hydrolase, NUDIX family protein [Brassica oleracea] (GB:ABD64992.1); similar to Os06g0634300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058136.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293)|similar to ATNUDT2 (Arabidopsis thaliana Nudix hydrolase homolog 2), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT5G47650.1); similar to hydrolase, NUDIX family protein [Brassica oleracea] (GB:ABD64992.1); similar to Os06g0634300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058136.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) 0.400623556121186 4.57124658357363 0.000824382215001006 1 4.98284515612973 6.59289175093514 0.400623556121186 0.0550652096377058
AT1G52720_at 4.07876089613393 3.90561265755695 2.91755794649451 3.40251743479118 3.29242463536427 3.66219573037833 2.22992994783885 2.25819416174241 2.89857216221806 2.77375534672332 3.71981301679505 3.96107095242975 2.97688355608894 3.5340430118751 4.31546616671454 4.18759451565146 2.53717023944057 3.18352471129619 2.70915634824794 0.185052747252806 0.190108852845292 0.189044539569636 0.186997212784747 0.193697009192249 0.203583561692993 0.191229988235075 0.200541101419855 0.189126573534160 0.185052747252806 0.187108317190157 0.188948831319218 0.191530983835434 0.188097841371415 0.194065615675919 0.190596972837862 0.195375489063617 0.185052747252806 0.195786639624612 1 1 + 19644727 19645003 19644876.273 19644567 19645333 + gene protein_coding_gene FALSE TRUE AT1G52720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15630.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92597.1) 0.479333669914523 4.57038774836262 0.000825533545783344 1 4.98164981843367 6.391286038129 0.479333669914523 0.109817542600592
AT1G07310_at 8.56581130361214 8.7463804932065 8.34650910048858 8.7828390550791 9.24613107113281 9.02816248816179 8.06297923396794 8.43561459960626 8.66054627895795 7.95790710972053 9.31842007992131 8.56942134633657 8.83197448600966 8.7518746550998 8.41712525886405 9.13297695493676 8.57793405337708 8.5641315440761 8.00250923577015 0.175528397477500 0.177971971067776 0.190967922202531 0.182958900125692 0.186115821080672 0.179566944040120 0.181402976210554 0.182263221313891 0.184363915066596 0.191025776062463 0.175190538405058 0.187354183342912 0.177580265111730 0.188662313060203 0.185864520415652 0.176557246614916 0.189629286419566 0.191290269920994 0.187470726411991 1 1 - 2247782 2248338 2248067.909 2247508 2248960 - gene protein_coding_gene FALSE TRUE AT1G07310.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23950.1); similar to C2 domain-containing protein [Hordeum vulgare subsp. vulgare] (GB:CAI58613.1); similar to Os09g0571200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063992.1); similar to Os01g0853800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044834.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.480854388481073 4.56968032199584 0.000826483172285182 1 4.98066511914036 17.1405383375622 0.480854388481073 0.110722056346942
AT4G30390_at 6.96412512033048 7.13209732390395 7.17869436574823 7.43105069201514 7.6515328850346 7.10034825345583 6.48108594620636 6.23092608152822 5.90655910731577 5.70257324139318 6.0952426303307 5.88450015089035 6.11778643111081 6.45235278251322 5.66588067407855 6.76944156888135 6.0270583201894 6.08913529642223 5.76588657519683 0.235922077124848 0.236688265705139 0.23984617523116 0.239435444692511 0.237166330938216 0.252338378181696 0.245151399563927 0.246316326518894 0.258865953246455 0.247339630961870 0.241623373673764 0.235922077124848 0.253892899397772 0.237186589810598 0.254832928307722 0.235922077124848 0.253850970695625 0.245957108386127 0.235922077124848 4 4|0 -|/ 14862230 14862839 14862487.25 14862015 14863191 - gene protein_coding_gene FALSE TRUE AT4G30390.1 unknown protein 0.492174844119005 4.5674874259389 0.000829434153279249 1 4.9776121848762 12.9859064367465 0.492174844119005 0.117152106593995
AT3G02070_at 5.90104180345594 6.12433972481584 5.93342313787928 6.10357472191986 6.76483763620458 6.93393626829967 4.47678084466447 4.60153816971451 5.29540999126084 5.10138079907211 5.43552676112489 5.00034458502448 4.95623210778 4.79035903007974 4.74287350119947 4.22716173823964 4.92615958438295 4.57282322698192 5.13348787307471 0.24317552563463 0.245210648125688 0.252576520148322 0.240620206579343 0.246798007805288 0.251595197385014 0.247802726173293 0.248606410393496 0.246709996386262 0.243328274411391 0.241084239780319 0.240620206579343 0.240620206579343 0.264300485337758 0.244097637386112 0.245381408980062 0.240620206579343 0.244304216191521 0.244992116120422 3 3|0 +|/ 361468 363092 362291.25 360928 363436 + gene protein_coding_gene FALSE TRUE AT3G02070.1 OTU-like cysteine protease family protein similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G22260.1); similar to Os02g0168600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046015.1); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); similar to Os04g0402300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052693.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.406346658897787 4.56600645440963 0.000831433364848298 1 4.97554992383982 10.8590313490297 0.406346658897787 0.0606857727783796
AT1G73260_at 1.95903984828584 2.09081695882836 4.55491343894430 4.80963744244494 1.43151970923994 1.75638653077688 2.05128772143636 1.86652311133596 1.77920021343805 2.38982943203255 1.74683064433279 1.58444331407854 2.28930178707111 1.64221227402752 1.44468014319949 1.81520953679213 1.94773120276663 2.19805187625234 2.17030091864832 0.222970737292123 0.225552031243379 0.230993770358673 0.245875550334973 0.227797590021456 0.238466328354350 0.227684231163790 0.228341274998913 0.22920525641314 0.222970737292123 0.224448219257344 0.223957235326892 0.225268692560841 0.236332293919039 0.222970737292123 0.225753011027035 0.226083563220685 0.227957248350463 0.227967301212559 1 1 - 27551143 27551633 27551381.273 27550935 27551851 - gene protein_coding_gene FALSE TRUE AT1G73260.1 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G17860.1); similar to trypsin inhibitor propeptide [Brassica oleracea] (GB:AAB68964.1); contains InterPro domain Proteinase inhibitor I3, Kunitz legume; (InterPro:IPR002160); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) 0.433322389827655 4.56525967165121 0.000832443392624535 1 4.97450988318212 4.53834948783892 0.433322389827655 0.081524349052987
AT4G37250_at 4.20772999139663 4.67587535049216 3.31874880459794 3.50508173999521 3.99272413629467 3.98234744213571 4.01298312951521 4.2015659933687 4.52400267911136 4.22488175442498 4.35335987458258 4.59626598592388 4.36701473242044 4.2099437371186 3.91977535001089 3.59568714889254 3.59469020603876 4.23325823066287 4.55795215660879 0.235254121767505 0.227476068915147 0.249797476802633 0.234729203213567 0.232718099827696 0.247168362968158 0.227476068915147 0.231884851563202 0.244462494723701 0.241504915664784 0.230553885092918 0.232503696771551 0.237281509230439 0.235731383162937 0.237860783088268 0.232474581591358 0.227476068915147 0.237443783102409 0.235996807827400 4 4 - 17527788 17528329 17528017.545 17527644 17530500 - gene protein_coding_gene FALSE TRUE AT4G37250.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G67280.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G23300.1); similar to Os06g0638500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058153.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os09g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062569.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.450837936973009 -4.56492379336005 0.000832898090492485 1 4.97404207621225 8.25931287593521 -0.450837936973009 0.0931206506582059
AT1G63530_at 0.918770557487218 1.35190532284119 2.81150366626939 2.98327597326477 1.46553874924268 1.37952723459304 1.41223507150623 1.15185037016483 1.25819768456250 1.7780400004296 1.23879988160379 0.852562754401419 1.59973751767473 1.26737240485475 1.30097592968650 1.45708352518608 2.22036656692957 1.90880876908674 1.55083213566984 0.236272740906931 0.238914915634407 0.249030580289339 0.251101381232653 0.239654271283306 0.239770346882208 0.239743976001 0.239147374596726 0.246150709645987 0.243359433717358 0.241807501326725 0.242094678438326 0.240237913686008 0.236272740906931 0.237119489626111 0.236272740906931 0.247703648528818 0.251526638876720 0.250151472431142 1 1 + 23568369 23568797 23568588.273 23566979 23569218 + gene protein_coding_gene FALSE TRUE AT1G63530.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G63540.1); similar to Leishmania major strain Friedlin proteophosphoglycan 5 [Leishmania major strain Friedlin] (GB:XP_843163.1) 0.451480610233285 4.56433130888343 0.000833700807876582 1 4.97321682465841 3.18919421428713 0.451480610233285 0.0935631564935768
AT1G35780_at 5.08364647257324 5.45927021067899 4.35423986032218 4.13767700124305 4.62564899268183 5.10577532723667 5.64751886413094 5.74200847941658 6.0275974019 5.5564597921487 5.94706284844422 6.42231398360759 5.53292627873609 5.53864006787262 6.06212728836342 5.93505936968915 5.33366409241317 5.9189547580849 6.04968096834813 0.219675534836222 0.215402421661854 0.222344124834639 0.224837311746838 0.228199005801452 0.216861262198519 0.215691735713462 0.220401196738641 0.218113101232454 0.220694133275231 0.218757545241405 0.211730141562270 0.222504708083615 0.220651554367445 0.215044334012504 0.21763575181685 0.221671257244161 0.213124289820693 0.215135266960931 1 1|0 -|/ 13279027 13279695 13279292.667 13278486 13281501 - gene protein_coding_gene FALSE TRUE AT1G35780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78150.2); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os07g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060324.1); similar to Os03g0387800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050261.1) -0.484422423113276 -4.56274772907129 0.000835850289676543 1 4.97101081693151 10.8766013043856 -0.484422423113276 0.113141525778949
AT1G65040_at 5.59944548221375 5.65566015195754 6.41548045491262 6.20993411530429 5.05648691999021 4.99358019739674 4.24964668236232 3.79926011446002 3.39064663503703 3.8250076692076 3.44410941990713 4.01609123644956 3.83385664458443 3.72199542044276 3.855533213749 3.94551605569772 3.67168345514754 2.73183828064489 3.62488597835938 0.350130206910621 0.348303257680413 0.366541997108694 0.366340191741951 0.361050351555977 0.382028748690396 0.348303257680413 0.361332739573899 0.381481722073383 0.348303257680413 0.359806761947254 0.348303257680413 0.387428362579626 0.348303257680413 0.369220967602227 0.348303257680413 0.350942990107322 0.379746382321779 0.348303257680413 1 1 - 24163971 24164630 24164368.833 24163497 24167291 - gene protein_coding_gene FALSE TRUE AT1G65040.1|AT1G65040.2|AT1G65040.3 protein binding / zinc ion binding| similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G16090.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE91898.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.440965926222883 4.56212824002346 0.000836692742179167 1 4.97014772093568 8.88048246150596 0.440965926222883 0.0869097515299499
AT4G24390_at 7.09158394522989 6.89290195340292 6.82512966497259 7.00606251922487 7.25642585889044 7.33863708334932 6.25563734515104 6.70950204967164 5.9909549747002 5.91704476522848 6.76535604530901 6.81087720072616 6.83732166928497 6.39750849987053 6.55188041975407 6.30531865213042 6.1496069405739 6.43832170884104 6.09943687480186 0.210741412673985 0.217838816531474 0.222898205266333 0.220011871604655 0.220457538831761 0.230617627601694 0.209643362276534 0.221675659286232 0.228917710801644 0.221016633076934 0.214007769879485 0.213242401685852 0.213245319443550 0.222242630957161 0.211495711811804 0.208745535154223 0.232162777296255 0.219823185860667 0.209715552716240 4 4 - 12613964 12614462 12614188.364 12613086 12616127 - gene protein_coding_gene FALSE TRUE AT4G24390.1|AT4G24390.2 F-box family protein (FBX14) similar to AFB5 (AUXIN F-BOX PROTEIN 5), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G49980.1); similar to Os02g0759700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048183.1); similar to F-box containing protein TIR1 [Populus tremula x Populus tremuloides] (GB:AAK16647.1); similar to Putative F-box containing protein TIR1 [Oryza sativa (japonica cultivar-group)] (GB:AAN64135.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553) 0.449351239364925 4.56169733773931 0.00083727925924628 1 4.96954733280124 13.1892364343056 0.449351239364925 0.0923799263063843
AT2G21830_at 3.42707995867572 3.38378898863263 2.99169045136731 2.79147158628518 3.50918497837316 3.17112980970483 5.38038595581236 4.85059750732402 4.01667931010871 5.0831688833193 5.28828746731318 5.16958307634628 5.04895878895812 5.07639843595471 5.07559272882434 4.60898622064097 4.61340929370098 4.6787413366899 5.21994670800065 0.250679640425308 0.251216757214819 0.267472603693974 0.264492128935156 0.243525622414250 0.261609088369451 0.248214714565878 0.243525622414250 0.25690827186904 0.246688370083141 0.245805914426147 0.243525622414250 0.244503813571572 0.253933920246958 0.247177977490477 0.243525622414250 0.265383901179491 0.246658941535037 0.245905504416671 2 2 + 9312335 9312745 9312543.818 9310793 9312977 + gene protein_coding_gene FALSE TRUE AT2G21830.1 DC1 domain-containing protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21850.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21840.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219) -0.486432097383945 -4.56061957716697 0.00083874813306568 1 4.96804552081077 8.54729597237012 -0.486432097383945 0.114388844690610
AT2G36960_at 4.86148939613368 5.29679816154185 4.99390445143278 5.28720053327108 6.00543301764445 6.15669369012035 4.7347707518051 4.80567177958775 4.23041367786475 4.40867017312517 4.70481106453778 4.62884794650402 4.52380266951392 4.62011009966194 4.37141016553741 4.86900266859895 4.79706253294805 4.63505179990850 4.62787534213351 0.254345987196468 0.256198820744473 0.261961467058695 0.256490796497764 0.261225065939631 0.257174552892615 0.254398819351925 0.256113842033719 0.272583287606526 0.258883192025132 0.254345987196468 0.257748805118657 0.25671075195512 0.255494821720817 0.261639657436597 0.265686370306600 0.268737564500465 0.257782696281852 0.258592036392553 2 2 + 15533609 15534274 15533905.818 15529999 15534556 + gene protein_coding_gene FALSE TRUE AT2G36960.1|AT2G36960.2 TKI1 (TSL-KINASE INTERACTING PROTEIN 1); DNA binding / transcription factor Arabidopsis thaliana myb/SANT domain protein Identical to TSL-kinase interacting protein 1 (Myb-related protein TKI1) (TKI1) [Arabidopsis Thaliana] (GB:Q8LJT8;GB:Q3EBL6;GB:Q8VZJ8;GB:Q9SJL1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39380.1); similar to Os03g0241100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049513.1); similar to ribosomal protein S14p/S29e containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99104.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68898.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to TSL-kinase interacting protein 1 (Myb-related protein TKI1) (TKI1) [Arabidopsis Thaliana] (GB:Q8LJT8;GB:Q3EBL6;GB:Q8VZJ8;GB:Q9SJL1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39380.1); similar to Os03g0241100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049513.1); similar to ribosomal protein S14p/S29e containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99104.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68898.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.453784019105126 4.55920065802589 0.000840686103613223 1 4.96606801826466 9.80078627241336 0.453784019105126 0.095325172461869
AT4G14750_at 3.02538584721291 3.41373517703656 2.70154950385437 3.12283711613019 3.78864632604292 3.56551463823557 4.1870752433128 4.02677104873346 3.80997475930057 3.54261568424443 6.28233699830355 5.33112220234807 4.88283576340232 5.63294844256377 5.753474199784 5.31238824929925 4.40191933286731 5.84796939002761 4.96438138304649 0.226242639406643 0.229585763511404 0.22601988482439 0.237715518946483 0.229306517985419 0.222541259536431 0.231364472241179 0.233029733860378 0.238184218366213 0.227687366380472 0.228457118889147 0.225832933383162 0.235377510804905 0.234715988159501 0.235465924757896 0.224717118900846 0.235283349782627 0.227796572389459 0.229027776023046 4 4 + 8471265 8471610 8471401.545 8470376 8472182 + gene protein_coding_gene FALSE TRUE AT4G14750.1 IQD19 (IQ-DOMAIN 19); calmodulin binding similar to IQD26 (IQ-domain 26), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G16490.1); similar to IQ calmodulin-binding motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53800.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.47818105689291 4.55691703841661 0.00084381498250639 1 4.96288469174084 8.24708016149734 0.47818105689291 0.109965807304724
AT1G74470_at 13.3780887118565 13.4907528698137 12.8313898526018 12.9921471534320 13.1913334685049 13.0158693905037 13.7598064767730 13.8931385301427 14.1471888847356 13.9907117150941 13.8393379873933 13.9859226845837 13.7890975400368 13.8818657684930 13.9307010853423 13.7941844930094 13.4055772508029 14.0618408856278 13.8732723589748 0.060313444821076 0.0594910995437164 0.0633352073172462 0.0597021159442645 0.0605067311615836 0.0623942207559524 0.0594910995437164 0.0608213504032945 0.0615426263669917 0.0598300612769311 0.0598845156947584 0.0598822380296333 0.0594910995437164 0.0601183031714425 0.0604577190924739 0.0594910995437164 0.0670234007314689 0.0594910995437164 0.0597654151379168 1 1 + 27995824 27996388 27996025.818 27994826 27996667 + gene protein_coding_gene FALSE TRUE AT1G74470.1 geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate. similar to geranylgeranyl hydrogenase [Lotus corniculatus var. japonicus] (GB:AAY52460.1); similar to geranylgeranyl reductase [Medicago truncatula] (GB:AAX63898.1); similar to geranylgeranyl reductase [Brassica rapa subsp. pekinensis] (GB:ABI63587.1); contains InterPro domain Geranylgeranyl reductase, plants and cyanobacteria; (InterPro:IPR011774); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Geranylgeranyl reductase, plantal and prokaryotic; (InterPro:IPR011777); contains InterPro domain Geranylgeranyl reductase; (InterPro:IPR010253); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.395210019288106 -4.55590448978882 0.000845206232386316 1 4.96147293284835 27.2389609474599 -0.395210019288106 0.0510734717890332
AT3G59390_at 3.07931928692041 3.38613160131995 3.12198167932815 3.09847887694993 3.21649048681170 2.85554770991048 3.52580493281365 3.67889209595493 3.21424152231383 2.99559239972317 2.56346492281976 2.76153972627133 2.50711277651313 2.92641827183145 2.85124633807787 2.54753704268952 2.72006169899726 2.42800070569733 3.38239957936928 0.258031306247107 0.252896937617212 0.265618973342854 0.255963963842325 0.253270876166047 0.278959195219245 0.251813711359749 0.254793559367816 0.258852487433337 0.255650989883538 0.257011100643339 0.257257845238834 0.252626122962775 0.256019535715212 0.253007629352616 0.257507833566095 0.254570946989461 0.256890139146756 0.251813711359749 3 3|0 +|/ 21957714 21959082 21958513.5 21957095 21959349 + gene protein_coding_gene FALSE TRUE AT3G59390.1|AT3G59390.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA92588.2); contains domain gb def: Hypothetical protein F25L23_250 (PTHR13481:SF1); contains domain FAMILY NOT NAMED (PTHR13481) -0.439325386387697 -4.55540144956693 0.000845898310301765 1 4.96077149783254 6.17562275999997 -0.439325386387697 0.0862502683507354
AT4G34240_at 8.57521332372141 8.98702725405685 8.66895724072266 8.65142179263677 8.6394568651611 7.86253297084534 10.1066110820884 9.76797414179773 8.50405051231137 9.32428722730727 8.6996514819572 8.93127195361074 8.71959290535404 8.93377158844481 8.173975768782 9.08039032521799 8.80276486290938 8.3743492578893 9.09842317881686 0.175976375847999 0.164868314657196 0.172690182326856 0.173911432073741 0.165639375498898 0.172143949869505 0.169744880327284 0.170480084378888 0.198883104847251 0.164868314657196 0.170605801647623 0.164980018053423 0.170071795229212 0.178943729028265 0.171527630255951 0.164868314657196 0.169498823043431 0.178450718054989 0.164868314657196 4 4|0 +|/ 16391878 16392586 16392310.1 16389662 16392828 + gene protein_coding_gene FALSE TRUE AT4G34240.1|AT4G34240.2 ALDH3I1 (Aldehyde dehydrogenase 3I1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)|ALDH3I1 (Aldehyde dehydrogenase 3I1); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase induced by ABA and dehydration Identical to Aldehyde dehydrogenase 3I1, chloroplast precursor (EC 1.2.1.3) (AtALDH3) (ALDH3I1) [Arabidopsis Thaliana] (GB:Q8W033;GB:Q940H4;GB:Q9SYY9); similar to ALDH3H1 (ALDEHYDE DEHYDROGENASE 4), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G44170.2); similar to putative aldehyde dehydrogenase [Brassica rapa] (GB:ABC41273.1); contains InterPro domain Aldehyde dehydrogenase NAD(P)-dependent; (InterPro:IPR012394); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.582365093932891 -4.55526054933813 0.000846092266297917 1 4.96057502004521 17.7524283292950 -0.582365093932891 0.163092789608288
AT4G15910_at 3.40983909162031 3.40804209845562 4.42339099079441 4.04845289193588 3.65155761517135 4.2083113909817 2.91527320370075 3.30993222120698 3.54986313054770 2.93929554837436 3.66298572460233 3.27555584832301 3.58909433871558 3.494317622757 3.65512563955819 3.05937718731389 3.9375066297871 3.16209904328965 3.27152512054298 0.198829116345743 0.198857751097835 0.198019620408151 0.203733166581491 0.202887629208104 0.207311871309075 0.197832520170926 0.19981142398543 0.203319541674225 0.197832520170926 0.197832520170926 0.203397571901592 0.205953671196281 0.201253549543753 0.202633207223784 0.198996262049143 0.200648257925269 0.205641754797688 0.207441298937595 4 4|0 +|/ 9028686 9029236 9029115.778 9028672 9029283 + gene protein_coding_gene FALSE TRUE AT4G15910.1 ATDI21 (Arabidopsis thaliana drought-induced 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. similar to late embryogenesis abundant 3 family protein / LEA3 family protein [Arabidopsis thaliana] (TAIR:AT1G02820.1); similar to Late embryogenesis abundant protein Lea5 (GB:Q39644); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) 0.52405152813996 4.55420508941787 0.000847546646052956 1 4.95910313077182 7.03838444837422 0.52405152813996 0.134750846593937
AT3G62290_at 11.8974670453110 12.0931657098977 11.9439151704420 12.073889990495 12.4122147998361 12.3848136719461 11.1884703229297 11.3879755335170 11.8290804195878 11.8624464262652 12.4290190954676 12.1677313272531 12.5104571443779 12.2060252911915 11.9791646658209 12.2736561221813 12.1409804454467 11.8883356794250 12.2082380468856 0.0703132403552812 0.0666930121199423 0.0675905167335141 0.0669630810291318 0.0695457407787633 0.0716314986191431 0.0682478247620293 0.070549483968679 0.0735281958658666 0.0681890122996437 0.0666930121199423 0.0666930121199423 0.0708216640052012 0.071638688204172 0.0728634473777934 0.0671603702354903 0.0717279627976415 0.0700308798511912 0.0673652099440391 3 3 + 23063262 23064406 23063844.545 23062625 23064732 + gene protein_coding_gene FALSE TRUE AT3G62290.1 ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.397385839540937 4.55229477413592 0.00085018566958328 1 4.9564386239315 24.0057437900343 0.397385839540937 0.0535476466750896
AT4G26530_at 12.217007912744 12.2898155604092 11.9234641540590 12.0253738466518 12.0331628082627 12.0494516810098 12.6924151074651 12.8382559952085 12.4551686927618 12.6029216567408 12.0782957678814 11.9309933495947 12.6499448524260 12.5844663410577 11.8760658301702 12.5269978655057 12.7172325882669 12.2910968029205 12.7134975521681 0.0596359781692497 0.0565449861180515 0.0582719667125015 0.0584430509640127 0.0559230933296967 0.0604629716386772 0.0593889635123848 0.0565271010285133 0.0634926064314727 0.0547725465432164 0.0547150733896403 0.0551687293809115 0.0555226078396644 0.056620312217524 0.0576064186670797 0.0547150733896403 0.0569467737418413 0.0576233594162081 0.0547669034650699 4 4 + 13392246 13392903 13392520.818 13391300 13393114 + gene protein_coding_gene FALSE TRUE AT4G26530.1|AT4G26530.2 fructose-bisphosphate aldolase, putative|fructose-bisphosphate aldolase similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.380076573644938 -4.55063394385874 0.000852487061071676 1 4.95412159533036 24.7198263708687 -0.380076573644938 0.0333871878313849
AT4G15240_at 4.74111200785104 4.76525914584305 4.75656801105307 5.31094992300648 4.72127413530149 5.01346972059839 4.30228425224088 4.14424504459478 4.47395770642089 3.59033624237737 3.86568609235515 4.43687787468394 4.37260417936371 4.45919408625841 4.20395953465981 4.34726495204923 4.67929521338347 3.57871324026468 3.16652435101634 0.286056244722368 0.280322487613390 0.278671325742291 0.290004988724602 0.289076796908370 0.281765109980344 0.285367085573998 0.278671325742291 0.291746899169286 0.278671325742291 0.281741805469193 0.287639837674506 0.279970160768964 0.290818375268819 0.288369134378657 0.278671325742291 0.313076914743405 0.304237963663269 0.278671325742291 4 4 - 8703528 8704035 8703829.429 8703075 8705378 - gene protein_coding_gene FALSE TRUE AT4G15240.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT1G05280.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); similar to Os08g0137300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060955.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740); contains InterPro domain DNA-binding TFAR19-related protein; (InterPro:IPR002836) 0.480841815773259 4.54943024989986 0.00085415909802117 1 4.95244202626469 8.7126730283439 0.480841815773259 0.111921963578882
AT1G15370_at 9.33376170018703 9.42011572256632 9.76947177960502 9.9128929669701 9.81486689824128 9.80537668919851 9.80556398821117 9.81652711471017 9.2857136306275 9.40419806613426 10.0397980897635 9.79846120583878 9.729306140691 9.7644746996953 10.0235551277450 9.87590736488334 9.76382170108871 9.9336374274244 9.34017932594777 0.105203219406011 0.101825247553543 0.112342548510920 0.105793748114825 0.103470345291536 0.104352986737329 0.105168271050698 0.106259043798479 0.118270983395492 0.107001704852638 0.102528834389088 0.104689982340250 0.107523958523430 0.110663041275938 0.107591167552862 0.103219500763396 0.107007772165940 0.103465833672208 0.109072903058511 1 1|0 +|/ 5287130 5288336 5287849.556 5287042 5288572 + gene protein_coding_gene FALSE TRUE AT1G15370.1 similar to Lon (GB:ABD28727.1); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.377208248744898 4.54865475635172 0.000855238152983292 1 4.95135981457363 19.3145640544001 0.377208248744898 0.0290798311375223
AT4G34740_at 6.16486521652054 6.52998602575174 4.55023866723203 5.24261845833788 5.42901328127155 5.52037538436448 6.56220132777469 6.79403363539199 6.43918797826111 5.45994812087453 6.15701485346433 6.62101229846079 5.69037734088379 6.07618986183845 6.19542797718758 5.97505618617042 5.88296480725238 5.97458265352196 5.56132163194683 0.26499570595192 0.246930846684732 0.242080300531484 0.245037167425754 0.242968746460676 0.241288240294224 0.244182056905823 0.256102582635303 0.271042203426376 0.241185127218840 0.244678865121942 0.241005047503531 0.237073017667041 0.248565524085604 0.253343935598768 0.241765799679048 0.249931927288647 0.246742595165635 0.244099443212149 4 4 - 16574984 16575439 16575168.727 16574582 16576676 - gene protein_coding_gene FALSE TRUE AT4G34740.1 ATASE2/ATD2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. similar to ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G38880.1); similar to ATASE (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT2G16570.1); similar to 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum] (GB:AAR06289.1); similar to Purine/pyrimidine phosphoribosyl transferase [Medicago truncatula] (GB:ABE79947.1); similar to phosphoribosylpyrophosphate amidotransferase [Vigna unguiculata] (GB:AAC24007.1); contains InterPro domain Amidophosphoribosyl transferase; (InterPro:IPR005854); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -0.537892216619140 -4.54682937616726 0.000857783726482107 1 4.94881206935486 11.7950319117681 -0.537892216619140 0.142157452702694
AT3G19000_at 7.59885441542805 7.70201534720511 7.67089836733732 7.89431125791194 8.6776617892158 8.31181802882525 9.01835404070694 9.09360140243079 7.04922504541765 8.57998272865583 6.50979739823633 6.49564067589881 7.8699452242455 7.40200035576642 6.24497052745302 8.02346978100946 8.41288529358672 7.36744010508453 8.15366745489742 0.195452778719768 0.197706051817655 0.196551007069145 0.200769703320919 0.190200759635645 0.200953864910935 0.194516414574851 0.209162781275257 0.210321930245246 0.195926370255502 0.187784642271271 0.198760363808429 0.185851923752814 0.200864846645566 0.210105312494206 0.192124334414131 0.207028665007698 0.209070108644788 0.196949709851538 3 3 - 6553841 6554301 6554152.182 6553535 6555153 - gene protein_coding_gene FALSE TRUE AT3G19000.1|AT3G19000.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19010.1); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os08g0249900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061373.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19010.2); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.425695173391839 -4.54605067566903 0.000858872081718534 1 4.94772503866249 15.8551362043745 -0.425695173391839 0.0774038748593676
AT2G43350_at 7.69265308019815 8.40212446511868 8.1310288863034 8.15424311971912 8.2801246990066 7.85755870691276 6.33978140791094 6.60003908456996 6.62843563353875 6.19791954605502 6.46484150210927 6.60385871021833 6.31944052216863 6.16771198367486 6.40798684372048 5.92366189304051 5.81130803165981 6.4858071699205 5.21361828671025 0.255969278159075 0.241746350914533 0.249669439694071 0.248406795436755 0.244159466003363 0.237472092234419 0.238385994596408 0.238796374015149 0.235483388943829 0.241116352418786 0.23442602093681 0.234971473529009 0.235926736912929 0.244109462834878 0.237642448525121 0.234514830872415 0.247309176595995 0.24053125094692 0.246292351918484 2 2|0 -|/ 18016276 18017565 18017030.444 18015719 18017677 - gene protein_coding_gene FALSE TRUE AT2G43350.1 ATGPX3 (GLUTATHIONE PEROXIDASE 3); glutathione peroxidase Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1. Identical to Probable glutathione peroxidase 3, mitochondrial precursor (EC 1.11.1.9) (GPX3) [Arabidopsis Thaliana] (GB:O22850); similar to ATGPX1 (GLUTATHIONE PEROXIDASE 1), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT2G25080.1); similar to phospholipid hydroperoxide glutathione peroxidase [Raphanus sativus] (GB:AAL55967.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.55342096841604 4.54525968849155 0.000859979096019634 1 4.94662075108029 13.8253949666335 0.55342096841604 0.149888180194072
AT3G13235_at 7.6798590602845 7.58086198313346 7.21466362449502 7.2560331159788 6.30060208735001 6.47627452369742 6.07449616913527 5.81757092579833 5.65015770788815 5.36386839419981 6.14359205062078 6.71519049376073 6.01596917087748 6.04597878033397 6.43839993612113 6.12177857112124 6.6156951941785 5.58198726850157 5.28461709025286 0.246647940388140 0.247011624580983 0.240522483205394 0.241362565063502 0.241665768748087 0.234967852260493 0.235210332272391 0.249471403709378 0.263525365124921 0.239265423623685 0.234293010013014 0.234293010013014 0.238968946197006 0.240748133122811 0.234906919682236 0.234293010013014 0.238096202017246 0.244728965809592 0.238566910031733 3 3 - 4271509 4272437 4272010.909 4271265 4274459 - gene protein_coding_gene FALSE TRUE AT3G13235.1 ubiquitin family protein similar to Peptidase aspartic, catalytic; UBA-like [Medicago truncatula] (GB:ABE83112.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Peptidase A2A, retrovirus, catalytic; (InterPro:IPR001995); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.40031958618412 4.54459913957785 0.000860904706857262 1 4.94569848551281 12.6213976848856 0.40031958618412 0.0569723818132806
AT1G74790_at 5.58269825564958 6.32182013807792 4.56882121132379 4.34520252662274 5.18976603366951 5.28937649432668 5.31991271060987 5.3812757703272 6.7997625132867 5.68202917846266 6.31453108445458 6.86930121072514 5.55316716021903 5.79979790392535 5.59555192371555 5.40937213528401 4.86228730237281 5.83382007024994 5.58970966276473 0.285529563141598 0.266319792334968 0.274336515932099 0.279903208924841 0.270358665669292 0.27419041260144 0.266319792334968 0.266319792334968 0.302022405047553 0.273426747816487 0.266319792334968 0.268429445210875 0.266319792334968 0.278327876412531 0.267186939429412 0.268642174037857 0.287298784846417 0.272476598129418 0.270793210869875 1 1 + 28104657 28105289 28105003.818 28102471 28105557 + gene protein_coding_gene FALSE TRUE AT1G74790.1 Identical to HIPL1 protein precursor (HIPL1) [Arabidopsis Thaliana] (GB:Q9SSG3); similar to HIPL2 (HIPL2 PROTEIN PRECURSOR) [Arabidopsis thaliana] (TAIR:AT5G62630.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39970.1); similar to hypothetical protien [Hordeum vulgare subsp. vulgare] (GB:AAV49993.1); similar to glucose/sorbosone dehydrogenases-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30151.1); similar to unnamed protein product [Triticum tur (GB:CAJ13560.1); contains InterPro domain Soluble quinoprotein glucose dehydrogenase; (InterPro:IPR011041) -0.523620169075095 -4.5435074109867 0.000862436815963358 1 4.94417404009412 11.1516403344291 -0.523620169075095 0.135159364225426
AT3G03020_at 5.40047865301717 5.16433185111623 5.58873580609621 5.50037452048333 6.13897419980566 5.61042190331899 4.83702942232379 4.31923268771307 4.9658804141348 4.42281961531251 5.16928106004297 4.94124024945812 4.89182508295298 4.57480507519536 5.05872732211011 5.02655691290581 4.70847377481142 4.98786341962274 4.56608641519939 0.170572670609838 0.167706483549408 0.170884140541877 0.171931253652565 0.184578006676338 0.174805190556298 0.167586465960745 0.164642196073885 0.184635580787717 0.182497305501281 0.172094608761365 0.174319176357233 0.173847834429513 0.170303935314601 0.169221558016381 0.166489571704628 0.171043137177576 0.170773668926852 0.165829255941016 3 3 + 681086 681255 681180.909 680951 682006 + gene protein_coding_gene FALSE TRUE AT3G03020.1|AT3G03020.2 unknown protein 0.523804792236014 4.54311421000882 0.00086298932792963 1 4.94362494076575 10.1056684273275 0.523804792236014 0.135276734104841
AT4G35905_at 5.10735842922995 5.44948036827548 4.17369022805082 4.38740026810397 4.77184296033459 4.54321568112496 5.17062756145515 5.56018705861529 4.72002420521471 5.10926697597518 5.03209332468011 5.09384059011832 4.93724233101134 5.05578228321429 4.97111604673462 4.42931882183953 4.49604845069688 4.86768500711452 4.99966049862184 0.216433837586644 0.209615838388595 0.219491988110298 0.207503450028217 0.202315519380987 0.219625952552621 0.203969297304848 0.211966256532729 0.221768504629295 0.20855077222049 0.203172289819151 0.20460439133481 0.204548749379491 0.212033846396595 0.209211672891585 0.205697952222172 0.218542936933205 0.211266906321199 0.214156106478581 4 4|0 -|/ 17007329 17008045 17007822.444 17007031 17008157 - gene protein_coding_gene FALSE TRUE AT4G35905.1 similar to Protein of unknown function DUF343 [Medicago truncatula] (GB:ABE93448.1); contains InterPro domain Protein of unknown function DUF343; (InterPro:IPR005651) -0.467734553167381 -4.54225725840853 0.000864194775415906 1 4.9424281298231 9.79716269449717 -0.467734553167381 0.104801201012866
AT1G13210_at 8.79372860789451 9.0952047642733 9.14142429059746 8.90357303270783 9.26224013671195 7.92966520924655 5.21615331541995 5.18602752793764 7.98354999846122 6.57192172308625 6.94859453990205 7.55202765995947 6.64653676496022 7.34019422783766 6.21134294238946 6.71332135973559 5.54148085097859 7.2556337212015 6.44313987637013 0.2737318342518 0.277418895078793 0.274130371432579 0.275924949897451 0.28553726438085 0.284982259759541 0.27815856690041 0.277015480742533 0.274495958783097 0.279113255561024 0.277086132467264 0.270626779891644 0.276742938841006 0.296631716162027 0.272771222422913 0.270626779891644 0.287109678077215 0.272025950306743 0.277384283045282 1 1 - 4509281 4509795 4509551.545 4508960 4513935 - gene protein_coding_gene FALSE TRUE AT1G13210.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 11 (EC 3.6.3.1) (Aminophospholipid flippase 11) (ALA11) [Arabidopsis Thaliana] (GB:Q9SAF5); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G26130.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.75652571124965 4.54150579715649 0.000865253289651003 1 4.94137854338147 14.8288414644369 0.75652571124965 0.240049001250062
AT3G25805_at 6.43830058949309 7.07021133408871 6.12178546494849 5.78439553286113 7.04833015767518 6.58440011475301 7.74298088015546 7.80422175425437 7.77094419896289 6.780090713912 7.02966684961984 6.96249433855464 6.28571767960837 7.2695097319506 7.54843908428781 6.8421440346225 6.27967410345469 6.84236690128712 6.7534443907632 0.228341206423037 0.226360772845240 0.234580397351819 0.224342121890725 0.22359407865202 0.240003896030235 0.234685293777749 0.226347996434340 0.235293904097585 0.221781638347453 0.221781638347453 0.223058796525223 0.22723018193904 0.221781638347453 0.22295448293824 0.222748881084801 0.247342338839183 0.223526623610817 0.235291933255659 3 3|0 -|/ 9427630 9428341 9427961.8 9427513 9429429 - gene protein_coding_gene FALSE TRUE AT3G25805.1 similar to Os04g0462300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053001.1); similar to B1358B12.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE76001.1) -0.549096166363978 -4.5402886429918 0.000866970675431892 1 4.9396783080185 13.8163255743466 -0.549096166363978 0.148072985550588
AT3G28210_at 1.45305705759098 1.71599815660238 2.6740253715428 2.68887276599835 1.75520168105760 2.05066741980477 0.94429199375578 1.21243704051479 1.81498138584433 1.40963231553837 1.27584609507858 1.07744692594423 1.39968122235599 1.17126177707967 1.22140228630808 1.37287693277135 1.66245392457337 1.26334857911918 0.97824605134352 0.244294503859559 0.249223068322988 0.261135985539243 0.272957017320432 0.241326833336221 0.244396087455818 0.238752002439679 0.243829938724675 0.248391038334606 0.241637361398506 0.239955030955215 0.239998862339428 0.242404110284617 0.243602932967053 0.240253819857165 0.244702448441847 0.245259108023747 0.241500734679053 0.247961264886847 3 3 + 10521835 10522426 10522116.182 10521746 10522769 + gene protein_coding_gene FALSE TRUE AT3G28210.1 PMZ; zinc ion binding Encodes a putative zinc finger protein (PMZ). Identical to Zinc finger AN1 domain-containing stress-associated protein 12 (AtSAP12) (SAP12) [Arabidopsis Thaliana] (GB:Q67YE6;GB:Q9XH76); similar to zinc finger (C2H2 type, AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G41835.1); similar to Os09g0385700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063070.1); similar to putative zinc finger protein [Cucumis sativus] (GB:CAI30888.1); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058) 0.43266610723998 4.53997991726816 0.000867406852179643 1 4.93924701101567 3.16506542026470 0.43266610723998 0.0827339282728233
AT4G03000_at 5.51477806435047 5.52893406070816 5.48102126076478 5.15874371822112 5.3366181418238 5.22579624839021 5.72251474316934 5.82456020257187 5.93519213098239 5.95588273477811 5.05050853121827 5.42712906676037 5.3959255421727 5.38879261484712 5.33698076506247 5.80754810556294 5.85986138501824 5.3774838182754 5.86428829085989 0.231240502978199 0.234302883895865 0.233837599931778 0.252575768090423 0.243134702883922 0.260800290972841 0.23469439509854 0.232424830589810 0.253634463523591 0.233915528285794 0.235784044470698 0.231127740501368 0.233105901742086 0.238151319541132 0.226136745053486 0.226136745053486 0.231302747376648 0.240133369657011 0.236070012802245 4 4 + 1326835 1327316 1327103 1324136 1327520 + gene protein_coding_gene FALSE TRUE AT4G03000.1|AT4G03000.2 protein binding / zinc ion binding similar to C2 domain-containing protein / GRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G03370.1); similar to hypothetical protein cgd4_200 [Cryptosporidium parvum Iowa II] (GB:XP_625629.1); similar to Os05g0141500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054605.1); similar to Os09g0371700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063022.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.405038791162714 -4.53938205371235 0.000868252187421404 1 4.93841173586016 11.1611123620774 -0.405038791162714 0.0616128010842964
AT3G24740_at 7.14110067514558 7.09238600702915 7.79453064414907 7.4448187819279 8.06451990610054 7.76124339079303 7.043462686057 6.75099414335645 6.7381269163742 6.90796051644696 6.75993241956096 6.81725066479651 7.16045097901519 7.10317664188896 6.61149045752688 7.48175927752777 7.61450820415585 6.80538841451042 7.05640996843755 0.177144487084430 0.173047208534210 0.171319728048313 0.179218940418948 0.175658305632978 0.173175487357544 0.170983479810779 0.17983604573891 0.200884417598989 0.170806895917668 0.179276838283018 0.184850921067551 0.175956118855085 0.18436298990842 0.1943482923083 0.171578495382754 0.181689318995806 0.175851431562818 0.173825900303638 3 3 + 9032892 9033382 9033100.545 9031104 9033847 + gene protein_coding_gene FALSE TRUE AT3G24740.1|AT3G24740.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25910.1); similar to Pm27 [Prunus mume] (GB:BAE48661.1); similar to OSIGBa0131J24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65926.1); similar to OSJNBa0027H09.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE03816.2); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.451352234066086 4.53788863657569 0.00087036755564411 1 4.93632501844768 14.3591705790494 0.451352234066086 0.0951306528209105
AT2G41800_at 2.35077333398489 1.9951629499598 1.4882203024474 1.45470328249514 1.57323879697316 1.87454767342692 1.67827902557369 1.64837466044641 2.16649649522565 2.97942493419401 1.67322696455753 1.52467060007607 1.52879983570539 1.95099339166384 2.31302335805237 1.50074995956317 1.79964932070901 1.86943727543018 1.78254857068436 0.195652394778473 0.195260027621095 0.194179426802429 0.196043329077674 0.194179426802429 0.198328241724283 0.199714796255468 0.199338812225571 0.19576213495706 0.204759798092290 0.197627899190362 0.198374561771324 0.199787286330719 0.198906712571745 0.194179426802429 0.200636576359004 0.197590502838536 0.197837780694051 0.203330027406924 2 2 - 17443766 17444440 17444089.455 17443607 17445118 - gene protein_coding_gene FALSE TRUE AT2G41800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41810.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.429945570235263 -4.53706992679645 0.000871529525316805 1 4.9351808938953 3.79769192229061 -0.429945570235263 0.0810338411217856
AT1G14210_at 4.66925406674252 5.06710904595529 3.37193993746907 3.03698355911752 4.98906683732948 3.97293377092322 4.73780954504723 4.59048703128531 3.8925454674057 4.14520670965106 4.16836768793532 4.49487527681375 3.90539901536305 4.19508739993922 4.48938304303112 2.87315287669231 3.25069357550417 3.70597649188140 4.80682059746007 0.230248569882121 0.23921743230899 0.236948376617183 0.240154784626202 0.230014920523012 0.254169701232600 0.229912532126114 0.250574556614554 0.234262328472425 0.233906682047408 0.234842459192847 0.229452225301672 0.239272334657402 0.234057922380847 0.232467316149343 0.228366230895378 0.232581716102034 0.234364189898348 0.231685092856231 1 1 - 4856903 4857644 4857304 4856773 4857959 - gene protein_coding_gene FALSE TRUE AT1G14210.1 ribonuclease T2 family protein similar to ribonuclease T2 family protein [Arabidopsis thaliana] (TAIR:AT1G14220.1); similar to wounding-induced ribonuclease gene (GB:AAC49326.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) -0.659795616662497 -4.53684361130729 0.000871851015566436 1 4.93486460416795 8.38789356376736 -0.659795616662497 0.199179429637675
AT4G28830_at 5.02349087024554 5.15701182275955 5.03166767092596 5.04901939506261 5.65647808246615 5.58776438788043 4.67922513901488 4.87821338431576 4.24701057288314 4.03837199734793 4.48080443389669 4.38244199493039 4.40006238749927 4.93767127682862 4.89539298221039 4.6152469321149 4.59444852854558 4.20524889696535 4.27850000650087 0.311080911240557 0.275101990378221 0.283724592905274 0.284047161808576 0.279126432137528 0.274306269396428 0.270414844269597 0.271958537056965 0.300501383430309 0.277995196001126 0.273385144354928 0.270414844269597 0.278095632173456 0.276506002467379 0.284249168319304 0.270414844269597 0.294720529840133 0.279626163024617 0.27765705478346 4 4|0 +|/ 14232531 14233896 14233396.857 14232452 14234048 + gene protein_coding_gene FALSE TRUE AT4G28830.1|AT4G28830.2 similar to early nodule-specific-like protein ENOD8 gene [Triticum aestivum] (GB:AAP80670.1); similar to Os06g0162600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056890.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216)|similar to MGC130850 protein [Xenopus laevis] (GB:AAI10730.1); similar to Os06g0162600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056890.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.386350450106554 4.53633612615936 0.000872572371910684 1 4.93415533114962 9.50879661310113 0.386350450106554 0.0432452561778975
AT3G10810_at 7.15295014377967 7.21354339459337 7.09084945491099 7.1385930566523 8.06889260999311 7.65562142842584 7.32665756614366 6.85435014316416 5.5144067921058 6.50694537132332 6.46169907472126 6.67431712661381 6.83614638799166 6.33396294328132 6.65220069972707 7.35524980444364 7.49488372636789 6.7685011112163 6.64977439294959 0.198705815310623 0.208154423484301 0.199626176357305 0.202869355092700 0.200838993968685 0.209386183558561 0.198705815310623 0.223539654029086 0.261930403847513 0.202453242787167 0.205742685648611 0.203482049661991 0.212043976017602 0.204180979660814 0.21750335684215 0.201480575707872 0.209485529759754 0.202307188628672 0.213966805053854 3 3 - 3381867 3382513 3382156.636 3381853 3384510 - gene protein_coding_gene FALSE TRUE AT3G10810.1 zinc finger (C3HC4-type RING finger) family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G56590.1); similar to putative RING zinc finger protein-related [Medicago truncatula] (GB:ABD32886.1) 0.475012541372238 4.53572182964038 0.000873446392986955 1 4.93329671777855 13.8355967054187 0.475012541372238 0.109424526833972
AT4G26850_at 11.4394720645240 11.6623508072046 11.9764475155556 12.0772391006121 11.6574643903309 11.4209214203324 12.6101856993346 12.9350761811394 12.492009583703 12.5790896740862 12.0654227947248 11.7731665023541 12.2742589183374 12.0893546318031 11.1683564303129 12.5089942619443 12.1645940406045 12.0443767440436 12.4072034151894 0.0814551220670467 0.0758225876760804 0.0809216857939738 0.0781199003388048 0.0758225876760804 0.0852198915601846 0.0807106624223858 0.0789586962398908 0.0827241343885292 0.0785884381490801 0.0769955226115552 0.077531060524407 0.0792194660754643 0.0776328785879582 0.0826964126066735 0.0758225876760804 0.0845759110591077 0.0803535706110214 0.0759185481082966 4 4|0 -|/ 13499282 13499922 13499544.5 13499016 13501654 - gene protein_coding_gene FALSE TRUE AT4G26850.1 VTC2 (VITAMIN C DEFECTIVE 2) a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55120.1); similar to unknown [Xerophyta humilis] (GB:AAT45011.1); similar to Os12g0190000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066338.1); contains domain SUBFAMILY NOT NAMED (PTHR20884:SF3); contains domain FAMILY NOT NAMED (PTHR20884) -0.430227549243429 -4.5342768253983 0.00087550597556986 1 4.93127675745777 24.2243111964668 -0.430227549243429 0.0814167073877079
AT1G73180_at 6.3031044738272 6.25510526772826 5.65728657248458 5.3348353611342 6.01915376681303 5.47710587272745 5.8706911454798 5.93622830618918 5.24732776464854 5.62240784330509 5.20030357802382 5.71245212251034 5.2098009697533 4.87145808107532 5.65693937697364 5.14360253779743 5.71129737161618 5.29521480468012 6.62857182297856 0.225238116199721 0.228562445164015 0.218701633520954 0.220183707262440 0.221243577954604 0.219431668374974 0.218823460183905 0.219717808378334 0.228164965132983 0.216289189468915 0.218362375185520 0.215364803316563 0.216657250995074 0.222926256405571 0.218276887947364 0.214914609199475 0.218256696549814 0.229407787146632 0.223465741054678 1 1|0 +|/ 27523569 27525067 27524190.222 27521577 27525310 + gene protein_coding_gene FALSE TRUE AT1G73180.1 eukaryotic translation initiation factor-related similar to TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G27640.2); similar to putative eukaryotic translation initiation factor 2A [Oryza sativa (japonica cultivar-group)] (GB:BAD19332.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Translation initiation factor eIF-2A; (InterPro:IPR011387) -0.475911221678295 -4.53391268672084 0.000876025791888597 1 4.93076767508161 11.4481402202719 -0.475911221678295 0.110048309510683
AT1G79700_at 5.765255035642 5.54435931368593 2.89849201904224 2.82338614128848 6.16333262390578 4.9970903180093 4.04836363895356 4.00870894671303 7.4736836812061 6.19185763579822 7.62580865382915 7.22089653633498 6.0728333910168 7.43301227767225 6.79390845003907 5.23739129903045 4.26996475666039 6.36611589126656 7.65114331210643 0.256321657688981 0.254722398842482 0.283841512707684 0.263756634213564 0.254751676115668 0.277393498685114 0.252588407355036 0.264026080373603 0.277311068817116 0.256709742745824 0.251485599135936 0.247745632311129 0.253560540072897 0.256386318164791 0.255617084663286 0.251481727752038 0.287427866227833 0.253078008871982 0.247745632311129 1 0|1 /|- 29995407 29996869 29995688.9 29995229 29998617 - gene protein_coding_gene FALSE TRUE AT1G79700.1|AT1G79700.2 ovule development protein, putative similar to ovule development protein, putative [Arabidopsis thaliana] (TAIR:AT1G16060.1); similar to Os08g0442400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061917.1); similar to AP2/EREBP transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10030.1); similar to Os09g0423800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063215.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.674583297121444 -4.53195524772311 0.000878825645836519 1 4.92803070237881 11.2726499796641 -0.674583297121444 0.205937189368807
AT1G02780_at 11.9842533805953 12.1766370076294 11.8640125338981 11.8241738380517 11.9396354268847 11.8447557170056 12.3515547996296 12.4169724662057 12.0148485822728 12.0784362442246 11.6702844094020 11.7104268259029 11.7022513258617 11.5998943297199 11.8302875102216 11.4283504144045 11.5675422130230 11.4455344157358 11.9686534892275 0.0790357550088963 0.0775119133694 0.07745017779929 0.07745017779929 0.0800912612636123 0.080701984863291 0.0823248906228887 0.0796735456727425 0.0832248521899979 0.078067962368818 0.080107150399336 0.0776345525653608 0.07745017779929 0.07745017779929 0.07745017779929 0.07745017779929 0.0835832110177688 0.0814321468649468 0.078056749360975 1 1|0 -|/ 608464 609302 608776.429 607808 609465 - gene protein_coding_gene FALSE TRUE AT1G02780.1 EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome Identical to 60S ribosomal protein L19-1 (RPL19A) [Arabidopsis Thaliana] (GB:Q9SRX2); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to Ribosomal protein L19e [Medicago truncatula] (GB:ABE84969.1); contains InterPro domain Ribosomal protein L19e; (InterPro:IPR000196) -0.38276735463134 -4.53074286709545 0.000880564509648641 1 4.92633517642443 23.8702331641253 -0.38276735463134 0.0394170555490587
AT2G05540_at 11.2250268596662 11.3434603059193 11.6438953146398 11.6430476017039 12.9622685108690 12.8120648182195 11.9536745126617 11.7914894033806 11.2712077148432 11.9540743472565 11.4466330645881 9.28442986270742 11.1795793286891 10.9964535490294 8.91950001733635 6.72867707378332 11.2327479138518 11.0908291507796 11.4804572858803 0.115295878512536 0.118226129237937 0.115521650815886 0.115391612827901 0.122777967127140 0.118193298007479 0.119953518259038 0.117785555923502 0.126880567781173 0.116607653327624 0.118345702524985 0.122406139590182 0.115843487757932 0.114424296473334 0.124376858752833 0.160160155952245 0.120425757403601 0.114914384669792 0.114612576491086 2 2 + 2033279 2033948 2033667.455 2033153 2034214 + gene protein_coding_gene FALSE TRUE AT2G05540.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G05530.1); similar to Glycine rich [Medicago truncatula] (GB:ABE77579.1); contains InterPro domain Glycine rich; (InterPro:IPR010800) -0.385908623306617 -4.52961717413389 0.000882182279205433 1 4.92476066156379 22.7610839297603 -0.385908623306617 0.0433992525202369
AT1G69970_at 1.76731766062243 1.90310258837333 2.02194658153733 2.23666334653621 2.34679638524539 2.20251901701091 2.14638544714094 2.10023716392184 1.70596921045011 1.73351055229768 2.11869399497628 2.5070207362399 2.49182688304495 2.61185517740849 1.8876491139635 2.33770372159827 2.18015879765806 1.52335362855907 1.49229746982994 0.208843637000641 0.201088844115145 0.20853057688055 0.198323651093638 0.202994228067053 0.214416449161635 0.198707282255397 0.215129888309755 0.198081511064975 0.207388734047753 0.204397470727318 0.198548763981921 0.206452730544912 0.204234904445180 0.200753479531553 0.202711467474041 0.217210504678692 0.198081511064975 0.206776016844085 1 1 - 26357581 26357877 26357727.818 26357563 26357919 - gene protein_coding_gene FALSE TRUE AT1G69970.1 CLE26 (CLAVATA3/ESR-RELATED 26); receptor binding Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can not replace CLV3 function in vivo. 0.393038815028159 4.52959893015786 0.000882208523921822 1 4.92473514181943 4.01622527423537 0.393038815028159 0.0511862987306477
AT1G77870_at 2.88361572726953 3.29159515178501 2.9271801629589 2.95731654217853 2.50113483040845 2.52026134732555 4.22309598714912 4.68008530730269 4.10570639532591 4.04447209095193 4.81993991420001 3.57953239927850 2.75572372122882 3.36427846849273 5.2647646707925 5.11849991096737 3.77559988044509 4.8150794779221 4.09299835892051 0.297508275644084 0.302119303443049 0.303911471015158 0.299275457491790 0.301313170323987 0.299440905491308 0.301692528444502 0.300927885764825 0.299706197886695 0.305820383845637 0.303304860187551 0.296487916232954 0.299546515878299 0.297335816065589 0.325456695054637 0.302752768044723 0.312483208217865 0.305391056115583 0.295537093177156 1 1 + 29290097 29290580 29290308.909 29289973 29290783 + gene protein_coding_gene FALSE TRUE AT1G77870.1 MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) Identical to Membrane-anchored ubiquitin-fold protein 5 precursor (Membrane- anchored ub-fold protein 5) (AtMUB5) (MUB5) [Arabidopsis Thaliana] (GB:Q9SH14;GB:Q8LB82); similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT1G22050.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.468753232821142 -4.52913394049807 0.000882877707930395 1 4.92408469349612 7.3819037589549 -0.468753232821142 0.106194169859795
AT4G35850_at 5.9594490306195 6.12203449441549 5.26997303541456 5.57375954757988 5.12152640024415 5.39349906652294 6.14777377578733 6.071102635288 4.70365824730438 4.85328665030228 4.46612899303019 5.23372015083854 4.61925424239977 4.71690604377057 5.35885585262866 4.77805226867647 5.04389363186122 4.70263925659347 5.37367874462925 0.229350759811103 0.230450468908175 0.224679174251709 0.223274489287612 0.22556385435848 0.226461820401133 0.223274489287612 0.232527494449927 0.223274489287612 0.226233798752457 0.226785054946964 0.224403517345434 0.229528457014047 0.231150213981926 0.228649661713994 0.223558915367727 0.227777349510567 0.225393405429890 0.228936982062920 4 4|0 +|/ 16985244 16986448 16985911.875 16983528 16986970 + gene protein_coding_gene FALSE TRUE AT4G35850.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G02150.1); similar to Os07g0300200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059422.1); similar to Os05g0145600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054633.1); similar to fertility restorer homologue C [Raphanus sativus] (GB:CAD80164.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.423671857012152 -4.52868549764102 0.000883523584231545 1 4.92345735697188 10.6282926744274 -0.423671857012152 0.0771148112444622
AT4G39330_at 10.0874949445284 10.2403542746827 9.21286960668929 9.26392657661136 10.554101460874 10.5852185684518 11.4602344343141 11.6591864803591 11.8115063285817 11.4077511706467 12.3249797908494 12.3713212480136 11.6091115454947 11.6329999823606 12.0432852984533 11.0022560789600 10.7391753464839 11.6811517268619 11.2542204369319 0.0843226025534104 0.0847050760369886 0.0921001279545087 0.0911475063646488 0.0903498100497899 0.0863168567977758 0.08496230855978 0.0886788324341214 0.0883484645317312 0.0847278728288823 0.0851671014520147 0.0856559690305937 0.0875393457241294 0.0866192655897513 0.0884091202876853 0.0843226025534104 0.091931819644602 0.0881963047801845 0.0863201592952332 4 4 + 18291987 18292734 18292412.364 18291212 18293082 + gene protein_coding_gene FALSE TRUE AT4G39330.1|AT4G39330.2 mannitol dehydrogenase, putative|oxidoreductase/ zinc ion binding Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)|Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.386706332591626 -4.52653440083778 0.000886628644596576 1 4.92044766823636 21.9662705129329 -0.386706332591626 0.0446343439688406
AT3G55320_at 5.61316261310864 5.57027045337571 5.77817528878419 6.07437663055033 5.80316867667462 5.72233456760258 5.76732753867809 5.86158895061465 5.21027132717187 5.10455574426754 5.83207436601194 5.66931326574251 5.808589839688 5.59212319708834 5.50015217183557 6.19779571529608 5.6379082852083 5.59187347356447 4.9098856427004 0.242493513635245 0.244024663266097 0.252111735921171 0.247338733814538 0.247868495651715 0.255727465622266 0.244822731313963 0.25495025346441 0.254359228118017 0.254208589218012 0.251790756030788 0.254790694227036 0.255405246536078 0.249588562689410 0.254224187948849 0.242493513635245 0.251389829471013 0.256074566912443 0.253529281727774 3 3 - 20518370 20518930 20518624.636 20517969 20524370 - gene protein_coding_gene FALSE TRUE AT3G55320.1 PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 14 (P-glycoprotein 20) (MDR14) [Arabidopsis Thaliana] (GB:Q9M3B9;GB:Q8GX68); similar to PGP6, ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G39480.1); similar to P-glycoprotein [Solanum tuberosum] (GB:AAD10836.1); similar to Os03g0280000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049736.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59584.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.397625476608231 4.5249060596067 0.000888986745314446 1 4.91816886878538 11.1756171035991 0.397625476608231 0.056074608521541
AT3G56610_at 1.59727529735238 1.86402154138466 1.79217067004459 1.7279143521399 1.62032184373262 1.08614516757309 1.78380202059191 2.12423003243724 2.37407786731422 2.58552774971989 1.49781394043885 2.15628498692251 1.80901386203958 2.13352306214736 1.13578354495680 1.75066233105617 1.90866320352229 2.14788882454307 2.58561838315560 0.177557425350082 0.184614341090671 0.181810073672679 0.177659832174844 0.175329087366675 0.174968357915425 0.171642674896072 0.18154493954524 0.173761192227275 0.180071048470081 0.177034015307315 0.176064064084202 0.175128398805633 0.172097229883106 0.171642674896072 0.174954798522409 0.178933288078227 0.177952846261515 0.175286720726634 3 3 - 20982666 20983007 20982852.818 20982565 20983063 - gene protein_coding_gene FALSE TRUE AT3G56610.1 unknown protein -0.491657330922783 -4.52374527651649 0.000890671770266257 1 4.91654412522735 3.86574955874866 -0.491657330922783 0.119460172882064
AT4G24930_at 7.55692092483954 7.64680953561973 6.52446478860415 6.20437394631286 7.14994797973401 6.59817917266113 9.13239108432983 9.26155534633052 8.78678265510904 8.82861507473472 9.8135309130028 9.9589971316956 9.33177378269518 9.70005511709312 9.79716857449943 9.76007930239444 8.90400879450234 9.34040077527253 8.65778038364058 0.212080497184628 0.200723427796819 0.231712818041356 0.228057686116111 0.206035455924632 0.227246625263386 0.197956779561144 0.196851005845654 0.216188506114584 0.203502834187833 0.199992281156969 0.196546908989747 0.200103490111032 0.196385299575808 0.200481803724325 0.196385299575808 0.201960352253045 0.202051268776369 0.203924014394926 4 4|0 -|/ 12821511 12822241 12821765 12821233 12823752 - gene protein_coding_gene FALSE TRUE AT4G24930.1 thylakoid lumenal 17.9 kDa protein, chloroplast Identical to Thylakoid lumenal 17.9 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SW33); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54257.1); similar to Os01g0102300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041747.1) -0.481075994942773 -4.52190086344573 0.000893356079388311 1 4.91396203966619 16.6760692656652 -0.481075994942773 0.113699723620060
AT2G42870_at 3.41581061452744 3.39818088365169 1.63576687323636 1.31665926117432 1.87114048770094 1.96494261199170 1.37332321872774 1.48460010611955 3.00083799130108 1.64605555908809 2.66177349542052 3.19580633927087 2.28897371834512 2.10100957476356 3.64306557404972 2.14171915992981 1.94039069902311 1.73676700772438 2.99539681031611 0.221803679527074 0.230272791258284 0.221739732970400 0.219136848097437 0.224896776530199 0.223471943016901 0.226704631861908 0.219899881509276 0.224024314299280 0.220869725131807 0.219136848097437 0.219136848097437 0.228709262459497 0.219136848097437 0.226893607026920 0.220000490765311 0.228467109929946 0.231917824002957 0.225443200795027 2 2 - 17843932 17844189 17844072 17843493 17844327 - gene protein_coding_gene FALSE TRUE AT2G42870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58850.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89478.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) -0.402296660699989 -4.51939973526256 0.000897009743923002 1 4.91045966902567 4.56311216529171 -0.402296660699989 0.0607719736124137
AT2G02450_at 8.1426198403461 8.48453346037678 8.56567202644356 8.48292147484601 9.03794945382835 8.7076740625387 8.4552712448226 8.3214010416411 7.40711070458513 7.8033246222226 8.51984855370052 8.66587597727556 8.03982122498207 8.28833488519147 7.53977310350528 7.69898970378989 7.44912332333803 7.64808636183618 7.15956484869068 0.168269828484831 0.160586968006694 0.163363249377665 0.156994247723203 0.155264646787921 0.160010363230279 0.162711949614164 0.155264646787921 0.176357085392791 0.160811109332532 0.162422477233956 0.157726708582988 0.163074433536980 0.158062896697304 0.162146012550054 0.157123473977345 0.172556084511242 0.169873543527117 0.172739786893278 2 2 + 650051 650513 650285.727 648043 650813 + gene protein_coding_gene FALSE TRUE AT2G02450.1|AT2G02450.2 ANAC034/ANAC035 (Arabidopsis NAC domain containing protein 34, Arabidopsis NAC domain containing protein 35); transcription factor similar to ANAC009 (Arabidopsis NAC domain containing protein 9), transcription factor [Arabidopsis thaliana] (TAIR:AT1G26870.1); similar to Os01g0888300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045038.1); similar to putative NAC transcription factor [Oryza sativa (japonica cultivar-group)] (GB:BAD82368.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.436081387076877 4.51547735683636 0.000902771238872329 1 4.90496497400967 16.2437045090397 0.436081387076877 0.086658000741886
AT2G06390_at 2.55372038178851 3.73333034496096 3.4992693366497 3.82734448558226 2.61534706989969 2.39442938005520 3.57590449707665 3.38555555375662 4.50326273637258 4.2768786534484 3.49213728657147 4.44196700979611 3.37922978563826 4.28098735399514 2.81706573723794 4.02613597157837 2.52906323279777 3.65963131050324 5.46831099307508 0.361744466561599 0.347377324672320 0.347377324672320 0.347377324672320 0.355573133189403 0.362593324880459 0.347377324672320 0.347377324672320 0.389880516656182 0.363062346196235 0.347377324672320 0.358457124625724 0.352188941999892 0.347377324672320 0.361443903916222 0.347377324672320 0.362332550514283 0.347377324672320 0.363654761029424 2 2 - 2516636 2516653 2516643 2516583 2516709 - gene protein_coding_gene FALSE TRUE AT2G06390.1 unknown protein -0.699618521483103 -4.51543486880040 0.000902833861097104 1 4.90490544010833 7.3619933005446 -0.699618521483103 0.217811849092938
AT1G71050_at 2.98523519417373 3.13276425715611 1.07095444562306 1.09470166284273 1.21795600850108 0.874625039545092 1.49315395569867 1.69478928449649 0.864708202210018 1.05835490985091 1.07066148015329 2.21298291773955 1.20854117800049 1.08257820210603 1.93848554982867 1.15112573265991 1.22153502751639 1.68177991283523 1.13494835972342 0.226388808006579 0.223065221611450 0.211174137167360 0.211024020568273 0.206160281794657 0.210369031207339 0.212540333564712 0.212579903185402 0.226377993444006 0.210068872927437 0.211955663323348 0.212521557208861 0.213659012174943 0.211058389633422 0.206160281794657 0.212698531980083 0.216378865838610 0.208027145188717 0.211007750297526 1 1 - 26806984 26807578 26807235.273 26806815 26807954 - gene protein_coding_gene FALSE TRUE AT1G71050.1 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT1G22990.1); similar to putative farnesylated protein [Brassica rapa subsp. pekinensis] (GB:AAN23108.2); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.41765114545488 -4.5148905750832 0.000903636488123121 1 4.90414275312864 2.92817168468782 -0.41765114545488 0.0735964099901218
AT4G21326_at 2.78478300964140 2.48144928881045 2.57300677706628 2.23522211908682 2.16112849161082 2.09057102667749 2.61970694076140 2.63314600686562 2.9184553208173 3.28082793762745 2.53253824683991 2.68911938426269 3.39776538794755 2.59622081082978 2.64759742024307 2.58598020883940 2.84894431984188 3.34710205171567 3.75247259765915 0.205158093221669 0.214953477659621 0.205152364007055 0.202563293484789 0.208294390687574 0.218813138050625 0.202009156638762 0.202009156638762 0.213100107375646 0.206345589872218 0.202009156638762 0.202009156638762 0.207309269510032 0.206533612499475 0.203311247455990 0.210537295692157 0.215205943770782 0.205620829241523 0.202009156638762 4 4 + 11349121 11349496 11349318 11346991 11349664 + gene protein_coding_gene FALSE TRUE AT4G21326.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10510.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10550.2); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.425691340564502 -4.51435387098086 0.000904428657606882 1 4.90339065215227 5.52133192298985 -0.425691340564502 0.0795428185876087
AT2G40760_at 6.64418547023465 6.63387695460767 5.76533402051370 6.06647550966336 5.96403429930746 6.20518379761662 6.51620118411139 6.73162555406282 7.49503132540128 7.41637174812204 7.06996958613416 7.65841325499405 6.70460651345437 7.05394590820628 7.82103159071317 7.31326387888097 6.7074597939168 6.96640013018746 7.20910771074534 0.166385298238173 0.164568696561906 0.166779872469645 0.179502869731605 0.185231751386984 0.178218032249054 0.179340697220924 0.169765048043317 0.180862850245874 0.168210430528095 0.167673724218019 0.170485538933493 0.167940858867432 0.16931236535689 0.177994102362758 0.164859620330234 0.180784537631174 0.17157063332443 0.168501102561130 2 2 + 17018498 17019016 17018806.909 17017126 17019145 + gene protein_coding_gene FALSE TRUE AT2G40760.1 rhodanese-like domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09280.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44134.1); similar to Os05g0323100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055193.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.421416323337077 -4.513710990053 0.000905378503664734 1 4.90248969824172 13.5835595621733 -0.421416323337077 0.076488047462607
AT2G21370_at 6.75564904664516 6.81149025674965 5.88923012519137 5.84633601549109 7.07106589853104 6.3049976805375 7.2071167515084 7.22489176831119 7.2281002677032 7.46493733817249 7.25939584546982 7.5887209974788 6.80736711643248 7.47262072019688 7.22688025325845 7.36061155331937 6.69461494520083 6.98151564236373 7.76073002317057 0.211226255573631 0.195234814442771 0.210037787302842 0.204409938319839 0.195838274589317 0.212140187252795 0.201411858610523 0.202102252764502 0.205813116303741 0.205276677802058 0.201751392506050 0.198186249925121 0.206666619546581 0.200665226552087 0.208959165081001 0.200107423325199 0.206903136849676 0.20278915522568 0.196805774009690 2 2|0 -|/ 9144699 9145568 9145283.6 9144534 9147161 - gene protein_coding_gene FALSE TRUE AT2G21370.1|AT2G21370.2 xylulose kinase, putative similar to xylulose kinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20723.1); contains InterPro domain Carbohydrate kinase, FGGY; (InterPro:IPR000577) -0.516251425666444 -4.51309805040289 0.000906285088189815 1 4.90163064015979 13.9681247398192 -0.516251425666444 0.133166054205703
AT1G49740_at 4.13996518093155 4.41564869267462 4.26804118031036 4.21426178355967 4.787103986873 4.75449185617487 6.02689009000237 5.99172185640788 5.24191864891852 5.50810947137791 5.39530088487522 5.13204345495482 5.01756505301688 5.67394618338365 5.3669225887466 5.85295487924193 4.89411128083832 5.07379789843013 5.57769203376062 0.211644917367733 0.197362750986755 0.202067998856029 0.203507899835968 0.205178734965660 0.203343062349405 0.197362750986755 0.201959710101413 0.199431393520374 0.209104400360631 0.197362750986755 0.204614310768637 0.201076768595805 0.205490009939436 0.197362750986755 0.20389707911198 0.21043152860445 0.197362750986755 0.197780739139861 1 1|0 +|/ 18412363 18413004 18412665.7 18411186 18413690 + gene protein_coding_gene FALSE TRUE AT1G49740.1 phospholipase C similar to phospholipase C [Arabidopsis thaliana] (TAIR:AT3G19310.1); similar to Os04g0430200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052817.1); similar to B0222C05.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66396.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909) -0.389662430012186 -4.51149008973801 0.000908667921484079 1 4.89937672178244 10.1964674096776 -0.389662430012186 0.0493111598274259
AT2G41430_at 12.7524712888395 12.9005698238772 12.9121209621294 12.9085869729434 13.1711163867518 13.1622222406215 12.4527335510405 12.4244514578702 12.2712289140340 12.3674126376895 12.8301258429521 12.6241226873326 12.6967401248871 12.6836775193439 12.3623428117463 12.7678466589066 12.8084245783479 12.6759783358984 12.3878277864413 0.0666939370095789 0.0646125373542112 0.0666677338128491 0.0673127453066068 0.072033013558404 0.0682307845124346 0.0674954762514491 0.0663582018156019 0.0778720525289026 0.0678633714694101 0.0656378396936435 0.0654552709403769 0.0649556829629125 0.0666548332214167 0.0698531011918968 0.0648464788606325 0.0667605632241246 0.0667742926575946 0.0670199835980162 2 2|0 +|/ 17276827 17277356 17277036.7 17276310 17277620 + gene protein_coding_gene FALSE TRUE AT2G41430.1|AT2G41430.2|AT2G41430.3|AT2G41430.4 ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14270.2); similar to dehydration-induced protein ERD15 [Lycopersicon esculentum] (GB:AAF75749.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14270.2); similar to hypothetical protein MtrDRAFT_AC158502g14v1 [Medicago truncatula] (GB:ABD33305.1) 0.372477992038299 4.511199617553 0.000909099073159144 1 4.89896951327855 25.3471909685001 0.372477992038299 0.0261448015854362
AT1G69720_at 5.35550572781855 6.13055047872648 5.82539953910991 5.94465686241585 5.03576356101343 4.32700595174011 4.8392504211408 4.84735889151123 5.87486573917526 4.48168665843295 3.24586645735628 3.52912481300131 4.17328387191591 4.35659999992968 3.49387742766714 4.25462588970071 4.34330206546604 3.74448745481857 5.00918071322847 0.253011804928488 0.246517298361862 0.243294150469752 0.243609808359376 0.237882317303367 0.236199947244389 0.236447735198896 0.235926011489789 0.245066593941833 0.238188873633135 0.235926011489789 0.24472491767888 0.235926011489789 0.242502676152003 0.240460857379117 0.235926011489789 0.237511490226727 0.237005507353709 0.240449657646939 1 1|0 +|/ 26231143 26232046 26231431.9 26230529 26232243 + gene protein_coding_gene FALSE TRUE AT1G69720.1 HO3 (HEME OXYGENASE 3); heme oxygenase (decyclizing) Encodes a member (HO3) of the heme oxygenase family. similar to HY1 (HEME OXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT2G26670.1); similar to putative heme oxygenase 1 precursor [Pisum sativum] (GB:AAK82969.1); contains InterPro domain Haem oxygenase; (InterPro:IPR002051) -0.619612470346526 -4.51098060821217 0.00090942429374007 1 4.89866247804664 9.7954649463983 -0.619612470346526 0.182924572963617
AT3G05800_at 6.78197471395434 7.44226856915508 2.70656002264319 2.89256967379753 4.95805439655468 4.97540395642383 1.81189381126656 2.07270452067338 2.5380211310727 2.48833797357358 4.63060895391534 5.74794701285335 3.67336198349262 4.65659776834387 5.82148882427725 3.01177097023838 2.51535113529239 3.76812507680658 2.70013218442313 0.323883666763493 0.315491593120153 0.30952503248817 0.309263989852801 0.306412224997202 0.325213640746428 0.326501242912447 0.31431964414691 0.306684825659428 0.310028185728081 0.303843188841726 0.30578142599544 0.303815196790299 0.307047040304675 0.303815196790299 0.303815196790299 0.310829384915163 0.304674711517997 0.308412372412161 3 3 + 1727603 1728086 1727855 1727312 1728302 + gene protein_coding_gene FALSE TRUE AT3G05800.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G09250.1); similar to Os03g0311600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049922.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE82804.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 0.504297988944235 4.51075330309676 0.000909761962525208 1 4.89834380419915 7.60700548906304 0.504297988944235 0.127040370341259
AT3G19820_at 9.29316338465096 9.47616048874677 5.86461699131081 7.12009234659267 8.20903275249625 8.26942220442171 8.67944558086781 8.9799122640072 10.0394166769030 9.50916388420107 10.7674894889694 10.6624795429676 9.63674064435476 10.1501169094976 10.6620039080399 9.54242198097308 8.85737784959521 10.1596755385201 9.6979430806394 0.154514178093294 0.150080410824524 0.213731260955664 0.210842859975584 0.154754185662648 0.163800012146421 0.160271641499835 0.151887715191214 0.159351397253313 0.152054414261645 0.157322864593785 0.153202962888948 0.153361083829141 0.158657614617691 0.152303744005209 0.150080410824524 0.162148767473386 0.155655660507964 0.150080410824524 3 3 - 6879852 6880508 6880220.545 6879623 6882321 - gene protein_coding_gene FALSE TRUE AT3G19820.1|AT3G19820.2 DWF1 (DIMINUTO 1); catalytic Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein. Identical to Cell elongation protein DIMINUTO (Cell elongation protein Dwarf1) (DIM) [Arabidopsis Thaliana] (GB:Q39085;GB:Q38808;GB:Q8RXF4); similar to brassinosteroid biosynthetic protein LKB [Pisum sativum] (GB:AAK15493.1); similar to ovule/fiber cell elongation protein Ghfe1 [Gossypium hirsutum] (GB:AAM47602.1); similar to diminuto (GB:AAA67055.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) -0.71771616845629 -4.51031751386055 0.00091040970939723 1 4.89773281855709 18.1382954750264 -0.71771616845629 0.225876673729009
AT3G25730_at 2.80754707244466 2.90280044189201 2.84237115386002 2.88777474567143 2.84581832886008 3.12297882559364 2.48389418916939 2.56907563563133 2.84223583184188 2.81148624909077 3.4422010860131 3.79241110301403 3.3347303499888 3.13504436604928 3.18212116403722 2.9475604760538 3.18191103488139 3.09384088123285 2.47794606709582 0.203195668701299 0.204787854798246 0.201668888269064 0.198097764358969 0.198288087840036 0.208478611099375 0.206145271321543 0.202216374447014 0.200798284078454 0.198097764358969 0.198097764358969 0.203899362954585 0.200867696198409 0.20536784713435 0.201892023231308 0.204104403387915 0.202761116157328 0.212062243074151 0.201004639075847 3 3 + 9398221 9398696 9398499.455 9397657 9398896 + gene protein_coding_gene FALSE TRUE AT3G25730.1 AP2 domain-containing transcription factor, putative similar to RAV1 (Related to ABI3/VP1 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G13260.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.393538968513967 4.50997329672147 0.000910921688222793 1 4.89725019631425 5.79492435264113 0.393538968513967 0.0533975330213212
AT1G64880_at 5.97773061140091 6.46996440807323 5.75518984279809 5.7576955405475 5.41417846011646 5.18920327948806 6.6287603698626 6.81624625412262 5.19166194209073 5.75036325498833 5.38546180979101 6.78136975555129 5.23189936312971 4.9094354987847 6.51645861784807 6.46845506169998 5.17977165727341 5.79813008995676 6.30565528985578 0.214501094629753 0.218629088542232 0.212712421129148 0.214326031585055 0.211794985494452 0.215961430554464 0.218544935364264 0.210046732667494 0.228528994079868 0.210046732667494 0.212603100409172 0.213935413507653 0.213214613487939 0.233050410466927 0.21740104683572 0.210110401343998 0.226704508982200 0.221242104936001 0.210046732667494 1 1|0 +|/ 24110411 24112404 24111798.667 24109305 24112809 + gene protein_coding_gene FALSE TRUE AT1G64880.1 ribosomal protein S5 family protein similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT2G33800.1); similar to Ribosomal protein S5, eukaryotic and archaeal form [Medicago truncatula] (GB:ABE85036.1); contains InterPro domain Ribosomal protein S5, bacterial and chloroplast; (InterPro:IPR005712); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.454731363675613 -4.50741813752352 0.000914731630673771 1 4.89366701835467 11.7676708761675 -0.454731363675613 0.0991204752111578
AT2G32090_at 9.61892562122924 9.7279107538021 10.0321601744046 10.1604453578633 10.6346641506349 10.2715497987860 9.6862091909686 9.98216364921572 9.65006185867801 9.78973376950492 10.4528246494998 10.0113027222668 10.4643112683595 10.3914250955619 10.0248999466555 10.2631444410964 9.98532619421381 9.87241963896195 10.0662621996811 0.100357167544050 0.100927720947440 0.107257498132389 0.101821872299865 0.100361606432880 0.110275828163757 0.101702537544058 0.102842843949894 0.106426685902723 0.105034326129789 0.105832230489229 0.102123779165105 0.103545465300115 0.105806084173627 0.102891797241885 0.100653728624840 0.105300140984476 0.105050581409817 0.107237206077473 2 2|0 +|/ 13651579 13652185 13652059.556 13651472 13652906 + gene protein_coding_gene FALSE TRUE AT2G32090.1|AT2G32090.2 lactoylglutathione lyase family protein / glyoxalase I family protein similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT2G28420.1); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABE82970.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.434378350953618 4.50577388443441 0.000917192192033644 1 4.8913606510108 20.0235332640455 0.434378350953618 0.0861415848638586
AT1G72180_at 9.17669204575808 9.39637418684318 9.2524051328804 9.26832500880199 9.6500841139611 9.5382050363121 9.26318630209113 9.21090109410582 9.48391580644324 9.35478982202442 10.562270658351 9.9194761036221 10.2691268155841 10.0745273164180 9.98051169389677 9.87134920314602 9.51914527968892 9.84848858488936 9.37006514377527 0.098647225771394 0.0926021310123209 0.0930500449113291 0.0921130738936668 0.0945530777316325 0.102121573785430 0.0926067845424476 0.0958186928537834 0.108574738784679 0.0946845764852648 0.0961818887399585 0.096905564310485 0.095789218096327 0.0986445402103266 0.0921130738936668 0.0963520211781499 0.0969356323492079 0.101032469035648 0.0966232097150242 1 1|0 +|/ 27170247 27170798 27170550.1 27166482 27171092 + gene protein_coding_gene FALSE TRUE AT1G72180.1 leucine-rich repeat transmembrane protein kinase, putative similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28309.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28308.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28307.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.38407739099562 4.50514479103839 0.000918135444594466 1 4.89047811155143 19.0487893889428 0.38407739099562 0.0436990804970243
AT2G32700_at 7.13757140876263 7.45743812620761 7.8221934351596 7.42937518759967 8.10517944042308 7.16608771503329 6.72520045781432 6.45916049763516 7.61952435361994 7.99006706076383 8.84283100757152 8.88021005200882 8.53193237075057 8.62826504989772 8.08370052410277 8.69313659252806 8.43110505299039 7.33244001759959 7.92318242017951 0.165509979558768 0.160258627004232 0.164738166867893 0.169699869179010 0.167165986621879 0.180290046796490 0.179917140775492 0.177741231980222 0.169864573546176 0.166288836266343 0.165469926048133 0.163575237403853 0.171964898704501 0.170854676957729 0.172705809521771 0.162243167315200 0.174474975056857 0.175371257815339 0.161356534142151 2 2|0 +|/ 13877929 13878870 13878437 13873849 13879217 + gene protein_coding_gene FALSE TRUE AT2G32700.1|AT2G32700.2|AT2G32700.3|AT2G32700.4|AT2G32700.5|AT2G32700.6 WD-40 repeat family protein similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to STY-L protein [Antirrhinum majus] (GB:CAF18246.1); similar to STYLOSA protein [Antirrhinum majus] (GB:CAF18245.1); similar to putative transcriptional corepressor LEUNIG [Oryza sativa (japonica cultivar-group)] (GB:BAD67819.1); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.634780480262866 4.50217797520947 0.000922597598446331 1 4.88631514259348 15.4238810477222 0.634780480262866 0.190304384398711
AT1G33030_at 3.74331715222198 4.92261341883438 4.09929936862774 4.43083945286399 4.5839538721125 4.22862806525278 1.40860001905899 1.1294467394329 1.34806720044759 1.76387882108610 1.36705040234093 1.17889211546656 1.56167516732409 1.25887941409385 1.25294496189298 1.13333772802592 1.46580448292282 1.52561892405976 1.22321995910052 0.281163120668739 0.292355154646959 0.288989193248865 0.282249344754260 0.287274691298872 0.283335424460409 0.27813053052809 0.279566444965334 0.274554245093716 0.271919952963977 0.272472800419285 0.27635988429127 0.27860893589194 0.280802086501057 0.277227275278017 0.275349191833865 0.279279866691195 0.271919952963977 0.274836813058349 1 1|0 -|/ 11964875 11965467 11965124 11964756 11966256 - gene protein_coding_gene FALSE TRUE AT1G33030.1 O-methyltransferase family 2 protein similar to ATOMT1 (O-METHYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT5G54160.1); similar to catechol O-methyltransferase; Omt II;THATU;2 [Thalictrum tuberosum] (GB:AAD29842.1); similar to O-methyltransferase [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAF60951.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.716327964982492 4.50041194287119 0.000925264561673272 1 4.88383638346086 4.96237762424762 0.716327964982492 0.225956745873184
AT3G11410_at 9.4453077709308 9.340683926036 10.2059076842524 10.1926839363854 10.2582885934271 10.0230056484126 10.0950924854378 10.2674017572375 9.30043863384621 9.39049177789523 9.69469500938348 9.31192123997967 10.4020584036563 9.66820980117108 9.3383971021963 9.8259176136363 10.3092603648104 9.7923279383876 9.4797849574468 0.0946001136492109 0.0922234875345866 0.095130449839693 0.0952185724968333 0.0949215876561671 0.0997307974951385 0.0955364495907575 0.0954784384648517 0.0959974145696603 0.0970009616990027 0.0939248332750535 0.093102423010792 0.0933267766820682 0.096641045575014 0.0965337137912877 0.0941131899970482 0.098633726551287 0.0962177529815864 0.0950453856255238 3 3|0 -|/ 3584299 3584915 3584593.556 3583889 3585796 - gene protein_coding_gene FALSE TRUE AT3G11410.1 AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. Identical to Protein phosphatase 2C (EC 3.1.3.16) (PP2C) [Arabidopsis Thaliana] (GB:P49598); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G29380.1); similar to protein phpsphatase 2C (PP2C) [Fagus sylvatica] (GB:CAB90633.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.392729979232700 4.49757852872754 0.000929560360840931 1 4.87985837906629 19.5700899205393 0.392729979232700 0.0536663595018461
AT2G16365_at 9.50412649236583 9.48710939518375 9.19144000252106 9.19243159399356 9.87920682229514 9.28831016617177 8.5239685487092 8.40217856303502 7.04676270419457 8.32280044362285 7.99792123815921 8.19351133516781 8.47465536479934 8.48992870870477 7.8821085536726 8.56045640170123 8.64302726819065 8.25406589166139 8.01672826676818 0.128293449310011 0.127177324030253 0.12324035278729 0.12324035278729 0.12324035278729 0.129125072376857 0.125417749612644 0.124151764552336 0.154095624283192 0.13562006911975 0.129253690952144 0.128687122873530 0.127952096520840 0.130007899042355 0.134815847593534 0.125194342815712 0.130864455459130 0.133080548492853 0.130503329968307 2 2 + 7082875 7083427 7083165.182 7081444 7086601 + gene protein_coding_gene FALSE TRUE AT2G16365.1|AT2G16365.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G16300.1); similar to hypothetical protein MtrDRAFT_AC149636g17v1 [Medicago truncatula] (GB:ABE85950.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34550.1); similar to hypothetical protein MtrDRAFT_AC149636g17v1 [Medicago truncatula] (GB:ABE85950.1) 0.462515135075262 4.49732727827833 0.00092994229704185 1 4.87950556802836 17.2372913564272 0.462515135075262 0.104448521664361
AT1G10910_at 6.67381304908082 6.26675673743987 5.28386960407652 5.21942998916538 7.17001082737062 6.3779862336863 7.36922504998081 7.00538826435615 7.26302322086261 7.43774887832807 6.92613479980933 7.17669159192349 7.02615582100005 7.07887787883204 7.40857747475965 7.30144531230034 7.0016558591547 6.70335492713275 7.58213666457444 0.180506719854919 0.172246955589348 0.181248729805624 0.19837815899443 0.17466950799358 0.180446413182022 0.180626534627012 0.172762827926158 0.176899385179068 0.176771050875641 0.174208500040958 0.178742814299357 0.169615767024009 0.175226378872036 0.173105755552746 0.175958977043495 0.193660220421234 0.179963519541472 0.178923403539904 1 1 + 3643036 3643910 3643506.455 3639878 3644162 + gene protein_coding_gene FALSE TRUE AT1G10910.1 similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2), binding [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to Os01g0559500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043343.1); similar to putative PPR protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87953.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.582873079057018 -4.49704678499464 0.000930368881260004 1 4.87911168108082 13.6735589507458 -0.582873079057018 0.166845470908729
AT1G55130_at 5.0661741356627 5.28780925881845 3.793041761574 3.61418653017575 4.41713995888359 4.00488174065785 4.3108462616511 4.70201825516796 4.38269311257857 3.9116838571722 4.30558829269330 4.69785332132226 3.51948487749576 3.84375516343737 4.72287914927424 3.78317053542047 3.44644876082036 3.57297964458163 3.8435667349287 0.238718848736041 0.228112242300048 0.231781416607712 0.234561387690767 0.230876145040224 0.23743641984937 0.238563427103546 0.228711988522360 0.254334708986636 0.236156427416666 0.228112242300048 0.231511249615483 0.236505098708370 0.240071822745937 0.228473635402278 0.228112242300048 0.237107392636836 0.229309438256035 0.228437327448829 1 1 + 20575345 20575866 20575623.909 20573321 20576060 + gene protein_coding_gene FALSE TRUE AT1G55130.1 endomembrane protein 70, putative similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT3G13772.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10383.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54580.1); similar to Nonaspanin (TM9SF) [Medicago truncatula] (GB:ABE93901.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) -0.471930373382369 -4.49667554226624 0.000930933796613402 1 4.87859033753864 8.41576283933584 -0.471930373382369 0.110006657222157
AT1G68810_at 2.64679548379866 3.35403162266298 1.53170118074431 2.10581425596820 2.39212207970416 2.20053372259403 3.84412410563035 3.69499951813055 3.28101706655678 2.9691688578334 3.1401947525305 3.91983019630948 3.02947717957322 3.66073613865997 4.28736769464679 3.66050295489486 2.92070110972598 2.80196442890055 3.49755855698854 0.236034347970687 0.227588974991725 0.236870723916893 0.236015290030114 0.232479165631137 0.235241628330138 0.230005749022164 0.235002931317253 0.240288020866159 0.238074350644377 0.227588974991725 0.235368059657383 0.230423353436259 0.235921234435713 0.24154085365757 0.229495185210585 0.227588974991725 0.236149120935227 0.232627767279385 1 1 + 25865518 25866493 25866106.455 25864786 25866783 + gene protein_coding_gene FALSE TRUE AT1G68810.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G25710.1); similar to Os08g0432800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061870.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94029.1); similar to Os03g0260600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049619.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.574548113178681 -4.49328524341214 0.00093610947422803 1 4.8738282032465 6.05968772983653 -0.574548113178681 0.163143196103696
AT4G24620_at 9.89450281643282 9.7708305008857 9.32917494517754 9.3478802307689 9.3269453054908 9.53454908238515 10.4747215125782 10.4708965467954 10.0327782269729 10.0566191861501 10.0178961579661 10.1324473963882 9.83558534515589 10.0543575722508 10.1809251605691 9.98509901134945 9.90304213429002 10.0664848786737 9.9618255020354 0.0943545436368833 0.0942088920662974 0.102962016000955 0.0980486528557186 0.0956128432049575 0.102470221912199 0.0946987704157806 0.0955949436784654 0.101376989135871 0.100594539493338 0.0940161282941752 0.0929828678969614 0.0941681024755337 0.102528143173542 0.0929828678969614 0.0929828678969614 0.100726735149800 0.0998960055645827 0.0947352592228935 4 0|4 /|- 12708991 12709817 12709362.875 12708762 12712835 - gene protein_coding_gene FALSE TRUE AT4G24620.1|AT4G24620.2 PGI1 (CHLOROPLASTIC PHOSPHOGLUCOSE ISOMERASE) The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions. similar to glucose-6-phosphate isomerase, cytosolic (PGIC) [Arabidopsis thaliana] (TAIR:AT5G42740.1); similar to glucose-6-phosphate isomerase [Lycopersicon esculentum] (GB:AAU00727.1); similar to glucose-6-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAD08451.1); similar to glucose-6-phosphate isomerase [Spinacia oleracea] (GB:CAA03982.1); contains InterPro domain Phosphoglucose isomerase (PGI); (InterPro:IPR001672) -0.381597525594914 -4.49312277970057 0.000936358251344784 1 4.87359995251606 19.7882146236309 -0.381597525594914 0.0419487817254453
AT1G70410_at 11.0027372497208 10.9686011372090 10.6370614858066 10.5668516173523 11.1451757770096 10.9175661388160 11.9786960527915 11.9465775688182 11.8662679486689 11.7961576323298 11.7483711438068 11.7335866537852 11.6946992393889 11.859796972455 11.7888023488379 11.8335074503784 11.4151376433562 11.7411779555855 11.8353994277776 0.0749643718788857 0.0694371828959458 0.0712049707044843 0.0712081104196309 0.072634967731305 0.0741223619017913 0.0723183452680051 0.0728876668492803 0.0753507808333339 0.071168257446921 0.0701682578436852 0.070492414359189 0.0695567639138323 0.072597717784551 0.0710772857461466 0.0701685784654494 0.0757375325532226 0.0728823161298231 0.0717536016513608 1 1|0 -|/ 26537848 26539326 26538381.444 26537589 26541996 - gene protein_coding_gene FALSE TRUE AT1G70410.1|AT1G70410.2|AT1G70410.3 carbonic anhydrase, putative / carbonate dehydratase, putative similar to carbonic anhydrase, putative / carbonate dehydratase, putative [Arabidopsis thaliana] (TAIR:AT1G23730.1); similar to carbonic anhydrase [Solanum lycopersicum] (GB:CAH60890.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.381606328849154 -4.49263074304636 0.00093711212006833 1 4.87290864666733 22.9251550095445 -0.381606328849154 0.0420107596738958
AT3G21600_at 2.16371617598147 2.44013462746518 1.79821821018553 1.65458274253368 1.62551015489656 2.02174716260506 2.18678863489725 2.4100345132414 3.37371445761232 2.68008984174336 2.65128628425183 2.72829943890119 2.35771914010265 1.67406005348682 2.77150059923645 1.87642101190583 2.22852059107893 2.38818205874891 2.05775958105745 0.249854905885458 0.252191722766687 0.254030775376498 0.253444507850032 0.254294303767598 0.260877146519329 0.257038290802446 0.254899800694153 0.262538471512488 0.260134324003187 0.259995663040559 0.255350077326813 0.255963567089022 0.249796740656640 0.257521664858749 0.249796740656640 0.259519048189205 0.265739717331068 0.254629864729607 3 0|3 /|- 7606770 7607570 7607095 7606527 7608414 - gene protein_coding_gene FALSE TRUE AT3G21600.1|AT3G21600.2 senescence/dehydration-associated protein-related similar to senescence/dehydration-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G15450.1); similar to Os01g0723100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044105.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) -0.447254949965706 -4.49246015656895 0.000937373631146966 1 4.87266896514533 4.55676816473499 -0.447254949965706 0.0953970479946769
AT2G33480_at 7.85930751226748 7.95448743547817 7.95490066116579 7.71008203444637 8.195352513424 7.32244314450169 8.60767668640068 8.11971392546922 8.03709782746076 8.59456466797817 7.9367637375456 7.92507311937993 6.88770695970965 7.23822490629185 7.14734758083091 8.37871354045398 7.71145541296315 6.91194437499547 8.55087394265972 0.204909461835943 0.205233831131189 0.197800091643252 0.198881851150465 0.201086465078541 0.203907984591116 0.202043182372488 0.213124577747166 0.215776703183986 0.199165885854708 0.205506684249303 0.198742496933366 0.208527753562216 0.212451008378868 0.203285432232473 0.197800091643252 0.222446173412061 0.218386937418538 0.203137426503362 2 2 + 14188706 14189274 14189022.818 14188262 14189478 + gene protein_coding_gene FALSE TRUE AT2G33480.1 ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor similar to ANAC083 (Arabidopsis NAC domain containing protein 83), transcription factor [Arabidopsis thaliana] (TAIR:AT5G13180.1); similar to unknown [Solanum lycopersicum] (GB:CAA99760.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.608313455098829 -4.49240755830324 0.000937454280370126 1 4.87259506127843 15.9211617475046 -0.608313455098829 0.178931643591312
AT1G27520_at 7.75591205316515 7.65233340651224 7.43734396187372 7.29501787795554 8.07171118110718 7.46935581820265 7.94484392261148 7.56926255630641 7.45667203548459 8.01960928007931 7.10286011146645 6.81140429478265 7.10567437377154 7.19803537656255 6.58892799817263 7.60782798569788 7.34121054362183 7.11754264194421 8.37170764777422 0.145261936954778 0.147456987187853 0.153619125013699 0.147503921610041 0.148387189982131 0.146220833745509 0.149897711831439 0.148292110084696 0.154495803911742 0.145261936954778 0.160264599021806 0.150361067519262 0.150236015636426 0.146822135974174 0.158152039283596 0.147369512259190 0.157406100121403 0.155713952296014 0.147793300720095 1 1|0 +|/ 9561101 9562050 9561658.1 9558622 9562368 + gene protein_coding_gene FALSE TRUE AT1G27520.1 glycoside hydrolase family 47 protein similar to glycoside hydrolase family 47 protein [Arabidopsis thaliana] (TAIR:AT5G43710.1); similar to Os02g0741300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048080.1); similar to Glycoside hydrolase, family 47 [Medicago truncatula] (GB:ABE91840.1); similar to Glycoside hydrolase, family 47 [Medicago truncatula] (GB:ABE82395.1); contains InterPro domain Glycoside hydrolase, family 47; (InterPro:IPR001382) -0.501187506778807 -4.49091318569508 0.000939748658568648 1 4.87049518005175 15.1787301323160 -0.501187506778807 0.126564211466060
AT2G29090_at 4.69659259252783 5.19661891744196 5.74656954753529 6.44195478855528 4.98782124522803 4.91256420298218 4.75730677699641 4.6971174604928 2.73749270511681 3.20131691865814 2.74092502116735 2.38178398096676 3.73235020615714 3.31384683176045 3.29935006323808 3.71773716956902 5.08452808830481 3.56010161436585 3.28246305106782 0.266757675217586 0.258693587592286 0.267891676120095 0.265919863881094 0.257305333560176 0.265187872387452 0.259020994630169 0.255930328256020 0.272419192478655 0.253246387897725 0.25930851703553 0.262163347035336 0.255547944885579 0.251418740997178 0.252775532017857 0.254401083798381 0.250038675221245 0.253639968833020 0.248682770420736 2 2|0 -|/ 12502156 12504104 12503319.125 12501928 12506233 - gene protein_coding_gene FALSE TRUE AT2G29090.1 CYP707A2 (cytochrome P450, family 707, subfamily A, polypeptide 2); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340.1); similar to ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum] (GB:ABA55732.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.545194411435355 4.48990012583184 0.00094130740981137 1 4.86907142292847 8.45586090658102 0.545194411435355 0.149155987940092
AT4G10450_at 6.42407642774361 6.99039474895381 5.78536241336041 5.8182253274251 5.57054391522448 5.91073873874137 6.89464622428307 7.07603075293553 4.53318242911038 5.15901815840529 4.96185195460477 5.71689738520798 4.89009710495301 5.132379501997 5.58518934195843 4.63090595566893 5.03133901896149 4.13483378547321 5.03316673553367 0.270052498918354 0.271973404256409 0.275246298824830 0.268402052785399 0.262144144833393 0.276715599029065 0.271993857233360 0.272073530854716 0.299059234733361 0.262191990156066 0.262144144833393 0.262144144833393 0.267697735237723 0.26385886038325 0.262990908359644 0.269810706211203 0.277771975948666 0.27379744323532 0.268741068799306 4 4 - 6463863 6464428 6464215.909 6462949 6464540 - gene protein_coding_gene FALSE TRUE AT4G10450.1 60S ribosomal protein L9 (RPL90D) Identical to 60S ribosomal protein L9-2 (RPL9D) [Arabidopsis Thaliana] (GB:Q9SZX9); similar to 60S ribosomal protein L9 (RPL90B) [Arabidopsis thaliana] (TAIR:AT1G33120.1); similar to 60S ribosomal protein L9 (RPL90A/C) [Arabidopsis thaliana] (TAIR:AT1G33140.1); similar to unknown [Solanum tuberosum] (GB:ABA81856.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, signature 2; (InterPro:IPR002359) -0.48654422901892 -4.48945686774354 0.000941990285725714 1 4.86844841267967 11.2681985838099 -0.48654422901892 0.118694468246770
AT1G72160_at 10.7223885010997 10.9482639933079 11.1418019938192 11.1963339724174 11.3973711498266 11.0748673129924 11.0683761361977 10.8740809618078 10.9384045355408 10.6955697320636 11.6589769875145 11.0659294584828 11.4918465930490 11.4575209254603 11.0811161509841 11.2396685590586 11.4161682088990 11.6389719293570 10.8922578561333 0.0956987954775847 0.0898036386818501 0.0878243268356445 0.0890701831711277 0.0886308480264735 0.0909889911580362 0.088837376218093 0.088868824432101 0.0921307425329003 0.0868549827269704 0.0891807234509632 0.087568026596526 0.0864883384266212 0.0903858831423315 0.0892715126235432 0.0882273166202338 0.093511935521742 0.0904508241711521 0.0885564066944287 1 1 - 27157497 27158179 27157846.364 27157243 27159326 - gene protein_coding_gene FALSE TRUE AT1G72160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-3 (PATL3) [Arabidopsis Thaliana] (GB:Q56Z59;GB:Q94AG3;GB:Q9C7T9); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G09160.1); similar to hypothetical protein [Cicer arietinum] (GB:CAB95829.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.419256843091020 4.48944842516681 0.00094200329726574 1 4.86843654610883 22.1646116157735 0.419256843091020 0.0765662390871388
AT3G55170_at 5.21980062323207 4.92147280701836 5.27496225772624 5.18078361978193 5.59343109572699 5.62703916802257 5.18553194117463 5.08044981663015 4.58988896797827 4.80524691677723 5.36972694531415 5.39427604741752 5.10518215440005 5.39434365589084 5.54406527359308 5.13740684709674 5.15163964125518 5.36153848690643 5.10296572792901 0.170816519954297 0.168242478396443 0.164407814423551 0.170635372026445 0.167237658311818 0.166813856118748 0.166191824019409 0.169151702909013 0.201336622369189 0.171455463793126 0.169238576854864 0.173368600208812 0.166057944574051 0.172191399703893 0.172915282742807 0.171201320221190 0.170725049443425 0.166010678009852 0.174151820799608 3 3|0 -|/ 20464120 20465111 20464389.375 20463887 20465319 - gene protein_coding_gene FALSE TRUE AT3G55170.1|AT3G55170.2 60S ribosomal protein L35 (RPL35C) Identical to 60S ribosomal protein L35-3 (RPL35C) [Arabidopsis Thaliana] (GB:Q9M3D2); similar to 60S ribosomal protein L35 (RPL35A) [Arabidopsis thaliana] (TAIR:AT3G09500.1); similar to similar to 60S ribosomal protein L35 [Solanum lycopersicum] (GB:BAD95794.1); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) 0.395906041111688 4.48921875072794 0.000942357339617744 1 4.86811371970353 10.330420375687 0.395906041111688 0.0574063970405497
AT1G29260_at 6.8992383590346 7.18860644831302 7.09336628259329 7.24300720922986 7.64306923286294 7.56639018062477 6.91112663055496 7.37652110694588 5.89938737531373 6.46820882291715 6.6439731960365 6.82140241108169 6.98367135686362 7.02854695306022 6.5414370457252 7.3656031020352 7.44051753828843 7.03657087108266 6.74032168601434 0.202914044244559 0.2024342081144 0.202534780326007 0.199781619646351 0.203368423347633 0.199038118352194 0.200639584647693 0.213418245985739 0.245425213802975 0.212792814970551 0.199155597908529 0.199038118352194 0.206057055735333 0.204516071568417 0.219518679180260 0.203267479698223 0.208992476160024 0.202633340051938 0.215231505925523 1 1 + 10225271 10225838 10225527.364 10224801 10226191 + gene protein_coding_gene FALSE TRUE AT1G29260.1 PEX7 (peroxin 7) Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. similar to MSI1 (MULTICOPY SUPRESSOR OF IRA1) [Arabidopsis thaliana] (TAIR:AT5G58230.1); similar to pectinesterase-like protein [Brassica rapa] (GB:ABD91573.1); similar to peroxisomal import receptor PTS2 [Brassica napus] (GB:ABB92566.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) 0.45299721898611 4.4889354530921 0.000942794234489021 1 4.86771550928393 13.9161763166133 0.45299721898611 0.099200934133197
AT4G03510_at 8.48253139874632 8.5476820082279 7.72501726902502 7.69460641692871 9.03265938810888 8.83134961226852 6.90524725644245 7.44176890098738 7.19292653078528 7.1261971324542 7.85803048319658 7.53949815182632 8.02184041419705 7.77820504072574 7.50896404623654 7.4516107602496 7.34393670304567 7.40784698705088 7.22863862713928 0.148712633754335 0.148893370983937 0.146013543519586 0.158566149685048 0.154480635821528 0.157405158032477 0.156753167251694 0.145282799689016 0.150797300235795 0.156852206814279 0.146288880444071 0.148767726641757 0.150628888295381 0.162720913005173 0.151003620398319 0.150119265912996 0.163134043526652 0.154132319549331 0.152930006586762 4 4 - 1557999 1558464 1558216.545 1557118 1559426 - gene protein_coding_gene FALSE TRUE AT4G03510.1|AT4G03510.2 RMA1 (Ring finger protein with Membrane Anchor 1); protein binding / ubiquitin-protein ligase/ zinc ion binding RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G28270.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G27470.1); similar to ring domain containing protein [Capsicum annuum] (GB:AAR99376.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.453877461835786 4.48566612446014 0.000947851538897125 1 4.86311908400226 15.4807722830630 0.453877461835786 0.0999457015563647
AT4G27652_at 4.71329645990183 4.98640892160882 4.96731141490052 4.87011651318026 5.3560405587865 4.96662826807899 4.82372728137068 4.91995328304531 2.78337909593064 3.74237701968514 3.91143424978604 3.94900353144315 4.27429455025009 4.60835165810709 3.16669562188682 4.12194394192407 4.26575044279027 4.32659687584418 3.65612605361152 0.298268710828418 0.295411865291994 0.320280879144306 0.302371141184766 0.303925587069189 0.311113715401576 0.301585652379817 0.298539422562247 0.31204216842284 0.295953224260129 0.305019717678891 0.290456549343398 0.291663788055887 0.292635616547689 0.304508306078521 0.290456549343398 0.295920966158428 0.303140807873846 0.295557905493051 4 4 + 13809954 13810122 13810040.909 13809839 13810362 + gene protein_coding_gene FALSE TRUE AT4G27652.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27657.1) 0.431612919091553 4.48463083989193 0.000949458948382857 1 4.86166318004187 8.68642012864898 0.431612919091553 0.0856469615075517
AT2G01760_at 3.87355328764424 4.00779891154865 2.32729646874354 2.86696712638668 3.99204555632688 4.01319585021148 4.70045479911592 5.2940767143241 4.51641557082239 4.51358083548292 5.47872519495199 5.14819791244591 4.99554501263292 5.01938588463885 4.50073804375403 4.6815804595854 3.95268446068223 4.80254239588215 5.09696999554326 0.242895424115887 0.240423957095708 0.256723462382066 0.241806067535493 0.239593494021995 0.240467098975945 0.238535802981357 0.238846012664303 0.253431036286681 0.238357786588106 0.238595723542902 0.238357786588106 0.247334252564371 0.244651436080413 0.255321822307724 0.238357786588106 0.252605209732478 0.238357786588106 0.238357786588106 2 2|0 +|/ 333772 334389 334154.9 332966 334695 + gene protein_coding_gene FALSE TRUE AT2G01760.1 ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14); transcription factor/ two-component response regulator member of Response Regulator: B- Type Identical to Two-component response regulator ARR14 (ARR14) [Arabidopsis Thaliana] (GB:Q8L9Y3;GB:Q9ZUA4); similar to ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT3G16857.2); similar to response regulator 8 [Zea mays] (GB:BAB41137.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.527829278892792 -4.48421488857079 0.000950105571170922 1 4.86107818387642 8.65013044988162 -0.527829278892792 0.140813828067055
AT1G05200_at 7.66622153783138 7.94254353847125 6.7637641016407 7.05173381242249 8.19895220424645 7.24006722080408 8.15403188084783 8.0463959921378 7.80150709354806 8.73010210568574 7.96959600526737 8.1764017919434 7.77812253533322 8.09997815024009 7.33956826598445 8.11539659100556 7.35247146298052 7.64903435990505 8.64852678718225 0.196089578087436 0.201124543317576 0.212216228910869 0.204910751369315 0.192014437109998 0.208324968371336 0.197123420918084 0.200096334583717 0.209346148688762 0.197692117890917 0.202271744886046 0.193131441113621 0.193561848509098 0.195110276259804 0.199013608693133 0.192014437109998 0.209267930718672 0.200942072556632 0.198494271579086 1 1|0 +|/ 1508340 1508959 1508657.8 1504959 1509151 + gene protein_coding_gene FALSE TRUE AT1G05200.1|AT1G05200.2 ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4) (GLR3.4) [Arabidopsis Thaliana] (GB:Q8GXJ4;GB:O23048;GB:Q8LGM9;GB:Q9SWD9); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to ATGLR3.5 (GLUTAMATE RECEPTOR 6) [Arabidopsis thaliana] (TAIR:AT2G32390.2); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to putative ionotropic glutamate receptor ortholog GLR6 [Oryza sativa (japonica cultivar-group)] (GB:BAD45488.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10393.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Metabotropic gamma-aminobutyric acid receptor, type B; (InterPro:IPR002455); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.610988209674929 -4.48364468418177 0.000950992741929914 1 4.86027619829452 15.7346886897858 -0.610988209674929 0.180701414281159
AT3G09740_at 9.65392425492278 9.67999455879042 9.770469125917 9.76719052984883 9.79866156010897 9.82491163774234 9.26270912833582 9.31913685810042 9.24679490994104 8.81040886485724 9.63661901019634 9.50237246916438 9.27639421524656 9.42355679268013 9.44831056358981 9.27748219720678 9.16245415005299 9.47248044994486 8.88874746620504 0.110398988310969 0.107355993289545 0.109746377395812 0.110263147347947 0.106663469413501 0.113830609014541 0.111749392832861 0.107255380755671 0.111423961376356 0.112789576359337 0.113076115044326 0.106856467215002 0.107691239782975 0.105630963561753 0.107592506242312 0.109602961371829 0.106683820850603 0.112645422481225 0.109101296598124 3 3|0 +|/ 2990074 2991227 2990589.1 2989436 2991666 + gene protein_coding_gene FALSE TRUE AT3G09740.1 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) Identical to Syntaxin-71 (AtSYP71) (SYP71) [Arabidopsis Thaliana] (GB:Q9SF29); similar to SYP72 (SYNTAXIN OF PLANTS 72) [Arabidopsis thaliana] (TAIR:AT3G45280.1); similar to putative syntaxin 71 (SYP71) [Oryza sativa (japonica cultivar-group)] (GB:AAT58726.1); similar to Os05g0553700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056264.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85201.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.364670998688029 4.48324480427753 0.000951615426927543 1 4.85971373956935 18.8255959457265 0.364670998688029 0.0116905632992949
AT3G49690_at 0.962145142534966 0.760858146353056 1.20561480183147 1.20440579644062 1.38162343198863 1.26162193010586 1.05990028102836 0.677146341522933 0.87592763493265 1.02485034711671 1.54640041321824 0.723767021943156 0.903772836892817 1.17994555878575 1.05738162661145 1.59745722329898 1.93889346596778 1.31433855199969 0.623042468426464 0.209800149003542 0.205188443294785 0.208959682442815 0.206379100426402 0.215280166486662 0.204635143885975 0.228962110342148 0.212586957257517 0.213707518753213 0.212678649519812 0.207162427272532 0.205158183083255 0.218413070074228 0.204635143885975 0.209439740091776 0.207682092623047 0.216271452368243 0.209628091198745 0.213537646867025 3 3 + 18439633 18440041 18439849.727 18438720 18440186 + gene protein_coding_gene FALSE TRUE AT3G49690.1 ATMYB84/MYB84/RAX3 (myb domain protein 84); DNA binding / transcription factor Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB84, regulates axillary meristem formation. similar to MYB68 (myb domain protein 68), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G65790.1); similar to MYB transcription factor MYB161 [Glycine max] (GB:ABH02906.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.419887558039806 4.48020838491638 0.000956357672848977 1 4.85544193267121 2.12617351939158 0.419887558039806 0.0776664347722759
AT1G09240_at 8.62063434706083 8.6484982642649 8.88514534684206 8.86790291299532 8.06335340081465 7.22692886688142 10.1715192272410 10.1427965169921 4.19392056609116 6.02629282525254 5.67906069267141 1.95940210693215 5.83847597706159 4.82853266757238 2.27534318813281 4.61292219583933 6.79226822345273 6.17063792787356 3.89652987522633 0.276394854526420 0.271257733722182 0.271257733722182 0.271257733722182 0.271257733722182 0.279457334089255 0.274221427680323 0.272593987828886 0.281086486464864 0.271257733722182 0.271257733722182 0.279098592066125 0.275463374563564 0.276133702077483 0.290202053829886 0.272896369905432 0.280809378316427 0.282572710736301 0.278685290332276 1 1 + 2985330 2985825 2985591.909 2984883 2986132 + gene protein_coding_gene FALSE TRUE AT1G09240.1 nicotianamine synthase, putative Identical to Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 3) (AtNAS3) (NAS3) [Arabidopsis Thaliana] (GB:O80483); similar to nicotianamine synthase, putative [Arabidopsis thaliana] (TAIR:AT1G56430.1); similar to nicotianamine synthase [Thlaspi caerulescens] (GB:CAC82913.1); contains InterPro domain Nicotianamine synthase; (InterPro:IPR004298) -0.535515086710512 -4.47991821664517 0.000956812151936702 1 4.85503362673845 13.5659280910359 -0.535515086710512 0.144943451493521
AT1G47290_at 3.64170502295662 4.03802099356329 2.33250659151284 2.59946094768291 3.01785593745275 2.73067830403271 3.07654092349851 3.34354514005490 3.04405813222245 3.09153517170951 2.73773687485407 3.30875441839166 2.57055552212305 2.92907338479807 3.36164702878914 2.23525525705797 2.38983360415196 3.86454035351924 2.86367752540141 0.233510132155393 0.233744098963059 0.234321955893764 0.233089027163481 0.229082237153669 0.235005084457382 0.223758447954592 0.228552625805571 0.240613458866969 0.229632066123169 0.224613743761894 0.228475703246954 0.228725396565331 0.229941998184616 0.231282053518275 0.223755812185339 0.231700268968588 0.224887000906413 0.225235610483360 1 1|0 +|/ 17339386 17340758 17340011.625 17338293 17341713 + gene protein_coding_gene FALSE TRUE AT1G47290.1|AT1G47290.2 AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating)|AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1); 3-beta-hydroxy-delta5-steroid dehydrogenase Encodes an enzyme with 3β-hydroxysteroid dehydrogenase/C4-decarboxylase activity in vitro. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the Arabidopsis gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound. similar to AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2), 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT2G26260.1); similar to Os03g0405000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050327.1); similar to putative 3-beta hydroxysteroid dehydrogenase/isomerase [Oryza sativa (japonica cultivar-group)] (GB:AAP50919.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225) -0.464954981249253 -4.47971629501543 0.000957128547645034 1 4.85474948743318 6.0597549818802 -0.464954981249253 0.106971472647264
AT2G24550_at 9.4665281776004 9.75182706562507 9.42302859435997 9.40623946863367 9.7904728742384 9.50124074413655 9.51693323925565 9.81188269670606 9.40981999699664 9.34074931432513 8.746549424202 8.16961370970831 8.71833691799289 8.81558129098932 7.8038023437661 8.90349539620809 8.83830196009524 8.87401339134676 9.35341538928622 0.145308390134943 0.140349443642329 0.151488233535397 0.148548537359041 0.142802208548645 0.149268203228485 0.148870500644289 0.140121685653400 0.154816811050618 0.140867097174891 0.143416942367200 0.148824573504207 0.143116168863745 0.145782598244480 0.160285762333384 0.14244672209765 0.153108925292293 0.144867067824797 0.142951615511988 2 2 - 10435334 10436075 10435835 10434936 10436301 - gene protein_coding_gene FALSE TRUE AT2G24550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31510.1); similar to putative KID-containing protein [Brassica napus] (GB:AAO53442.1) -0.432915235184363 -4.47853946121671 0.000958974743764541 1 4.85309333925703 18.5718724598151 -0.432915235184363 0.0869292244521535
AT3G11820_at 8.60028266945608 8.64475179236571 8.81665309163926 8.90464109100706 8.32801010254058 8.10393558890107 7.10997645107952 6.8878187277114 8.50655694380616 7.36423290524754 7.8724040619177 8.2682297825606 7.05720716146616 8.11051150940873 7.40627440491401 7.46977492984775 7.30632930958867 8.15287120108182 7.06004615271706 0.141711914675664 0.146106791143291 0.139498425471516 0.145155788595809 0.140629406608566 0.139487725255323 0.143383300370976 0.145073124679280 0.140489273938950 0.141173438311329 0.143153576201759 0.142860402823309 0.144937296041844 0.145746437715145 0.146316482241411 0.139943621988841 0.148346836041949 0.142872251723355 0.153657569986422 3 3 - 3729572 3730385 3729909.818 3729311 3731155 - gene protein_coding_gene FALSE TRUE AT3G11820.1|AT3G11820.2 SYP121 (syntaxin 121); t-SNARE Encodes plasma membrane syntaxin, which is a member of SNARE superfamily of proteins. PEN1 is one of the known factors of non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. However, PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus even though there is a appresorium differentiation and melanization. Required for mlo resistance. Identical to Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1) (SYP121) [Arabidopsis Thaliana] (GB:Q9ZSD4); similar to SYP122 (syntaxin 122), t-SNARE [Arabidopsis thaliana] (TAIR:AT3G52400.1); similar to syntaxin-related protein Nt-syr1 [Nicotiana tabacum] (GB:AAD11808.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.394720426438372 4.47817809740561 0.000959542395205044 1 4.85258474856352 15.8490398371818 0.394720426438372 0.0572083312551548
AT1G23200_at 2.92191606403117 2.85949046930022 3.58538187551474 3.87859238430666 3.41192310273465 3.86619587629684 3.42073444702501 3.94870123145379 2.62774885048395 2.74614648874037 3.15451978007585 3.63038655226522 3.51599360698811 2.97006099665755 3.30369996660601 3.05288746317016 3.53095384834257 3.11294062304928 2.62042491982022 0.210570952381558 0.210758244497130 0.223731364202664 0.212583124001373 0.219147898512438 0.21937495997509 0.21692359433225 0.223918073386088 0.230542913777257 0.218653173316958 0.215991142985453 0.217807222947067 0.219999864312126 0.210570952381558 0.212113627051267 0.210570952381558 0.225292279206774 0.213794349396605 0.216557478927536 1 1 + 8228809 8229164 8229002.273 8227167 8229571 + gene protein_coding_gene FALSE TRUE AT1G23200.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G45220.1); similar to putative pectin methylesterase [Populus tremula x Populus tremuloides] (GB:CAC01624.1); similar to Os01g0312500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042866.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.508484845861751 4.47762887531837 0.000960405821302741 1 4.85181172054033 6.46096881849581 0.508484845861751 0.131223146156017
AT3G62580_at 9.4580171375492 9.79745216150625 9.57252247554715 9.87028779034025 9.60961444323235 9.15084120413175 9.15417298259379 9.14305033966242 7.3835124027282 8.36958836184347 8.40795457109324 8.56380868838789 8.68349439085643 8.51746135835435 8.59874944442683 8.70121785253291 8.69649086007012 9.0170787688696 7.8462881981074 0.20946778893731 0.206783344563748 0.212453167154202 0.206861131321876 0.205274240801354 0.210808092582451 0.200393125853517 0.201941015686927 0.2343207075744 0.203473796102065 0.207635570779278 0.200393125853517 0.203439393883204 0.210781229703911 0.208235837594566 0.208423263371899 0.213077510555166 0.211955819176382 0.211725225790247 3 3|0 +|/ 23157949 23158635 23158296.6 23157804 23158927 + gene protein_coding_gene FALSE TRUE AT3G62580.1 similar to late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72100.1); similar to Os12g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067006.1); similar to Os11g0673100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068440.1); similar to hypothetical protein MtrDRAFT_AC152921g2v1 [Medicago truncatula] (GB:ABE78085.1); contains domain MBC3205 (PTHR23241:SF8); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241) 0.472231163624596 4.47635153088975 0.000962417077879105 1 4.8500136680137 17.7268673065122 0.472231163624596 0.111412387772213
AT4G00340_at 3.46354376572554 3.49670896085543 3.65109137274773 3.56163499448608 3.89479352289893 3.73268295711713 3.51896696585293 3.47254058573085 2.42119683321209 2.12343378108106 2.71222832403583 2.49287596617878 3.19007873699529 2.75083796515297 2.95784657321564 2.81941285620966 2.41831868449832 2.64534470929666 2.12314346520521 0.249950834960596 0.255539866537947 0.241159614273572 0.249470607207821 0.254068812386145 0.258127867333634 0.251683290069416 0.254839263232956 0.253832486410725 0.264306044944016 0.242822598199396 0.245559780245439 0.241173713769446 0.241159614273572 0.246748466249268 0.242269598340823 0.254678136719130 0.245885092842121 0.252788813649796 4 4|0 +|/ 149567 150024 149795.9 148814 151686 + gene protein_coding_gene FALSE TRUE AT4G00340.1 RLK4 (RECEPTOR-LIKE PROTEIN KINASE 4); sugar binding Encodes a receptor-like protein kinase that is expressed in roots. similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to receptor-like protein kinase (GB:AAA32858.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain N/apple PAN; (InterPro:IPR003014); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480) 0.373943629693193 4.47608793541887 0.000962832675331758 1 4.84964258417864 6.08447505906717 0.373943629693193 0.033528696043769
AT3G59940_at 11.5019765842664 11.6462081956725 11.8936489835968 11.9657051179188 12.3187630378991 12.2744615349683 11.2223656712732 11.5850327060109 11.5202875853563 11.7168680858917 11.9742738062148 11.7723250554914 12.0410550604667 11.9297596316360 11.4534140611367 12.0854547693546 11.7656886145414 11.6747805795066 11.6984835316856 0.0728796694254385 0.0686974339382054 0.0716574981071772 0.0730073207353303 0.0706727037593621 0.0762017477729909 0.0691610812064062 0.0688465862925786 0.0823392119102593 0.0699191167985227 0.0686974339382054 0.070085235055643 0.0688232283508926 0.0739033120933079 0.0694624743714636 0.0686974339382054 0.079351552953234 0.0726813726544095 0.0686974339382054 3 3 + 22154643 22155217 22154890.364 22153877 22155416 + gene protein_coding_gene FALSE TRUE AT3G59940.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44130.1); similar to kelch repeat-containing F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15578.1); similar to Os11g0246200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067606.1); similar to Os06g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057979.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.408064879469515 4.47320093712707 0.000967396813657118 1 4.84557757223836 23.5421737364197 0.408064879469515 0.0691103383128616
AT4G24150_at 0.873131472260585 0.762726157893379 1.57773198849806 1.04110429436301 1.20482092175061 1.43453419543363 0.819260386401399 0.829686196923937 1.05896805694940 0.75523337738649 1.21370476903968 1.22297664377255 1.45616952602579 1.35235361426900 1.15216962188672 1.56612028788207 2.11202777719848 1.29046761449105 1.18519784799478 0.184464534081757 0.184784453604497 0.186156237356736 0.187621609241499 0.187347526378747 0.193053702734112 0.191022300630423 0.183919306485887 0.190551119634934 0.183426473788519 0.190448207569039 0.185752045991304 0.189810513676506 0.187473169708762 0.202845662465525 0.188137283932922 0.185139751884443 0.195970563406346 0.188264084446290 4 4 + 12538734 12539338 12539119.727 12535982 12539397 + gene protein_coding_gene FALSE TRUE AT4G24150.1 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. similar to AtGRF7 (GROWTH-REGULATING FACTOR 7) [Arabidopsis thaliana] (TAIR:AT5G53660.1); similar to putative transcription activator [Oryza sativa (japonica cultivar-group)] (GB:AAO38468.1) 0.457147883842639 4.47138782601918 0.000970274823827274 1 4.84302392566396 2.27814869798935 0.457147883842639 0.102823527316692
AT1G71260_at 6.06615264008515 6.31501101607807 6.20176430802555 6.1393806876373 6.0384116480191 6.0123724817188 6.80015641056834 6.89010897786744 4.48278369612247 5.02129741603198 4.07208207398035 4.24605902215728 4.27412679514898 3.96391361097362 4.85215761777537 4.67443293384217 5.38941252468954 4.20552284022296 4.91952604863084 0.258705994535645 0.249551338638298 0.255060632958015 0.251930006511774 0.250284929822252 0.245655584676130 0.261607122304765 0.249087632042070 0.268011321374953 0.246871609836993 0.250611007506213 0.250554746096107 0.248575196504794 0.246508446741165 0.247842290894129 0.245655584676130 0.261087821533737 0.264441354015867 0.245655584676130 1 0|1 /|- 26865567 26866732 26866345.75 26865319 26867084 - gene protein_coding_gene FALSE TRUE AT1G71260.1 ATWHY2 (A. THALIANA WHIRLY 2); DNA binding Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. similar to ATWHY1/PTAC1 (A. THALIANA WHIRLY 1, PLASTID TRANSCRIPTIONALLY ACTIVE1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G14410.1); similar to Os02g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045956.1); similar to DNA-binding protein p24 [Solanum tuberosum] (GB:AAF91282.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Plant transcription factor; (InterPro:IPR013742) -0.384015303022937 -4.46792756118163 0.000975792397426936 1 4.83814884920381 10.9417110117219 -0.384015303022937 0.0472637949524171
AT3G14960_at 5.8558249029443 5.71653737449348 6.03396573011759 5.67371445891796 6.20242163843475 6.32571573027801 5.56637136217618 5.56075529892543 4.66553933393887 4.37572501139737 5.12925383933474 4.97956633334532 5.28500461632713 5.2773633018418 5.10215479988519 4.9358225942145 4.74497575719091 4.91571038840364 4.79644811638137 0.226876095213023 0.215408408866883 0.225167487469842 0.222436743897645 0.217617559596702 0.220491992166284 0.215408408866883 0.222039197644436 0.217801767741252 0.226894045337275 0.215408408866883 0.217868461991884 0.226764643109661 0.215408408866883 0.216215248703433 0.216865219456548 0.229367025096219 0.219847659192135 0.225401465360097 3 0|3 /|- 5036265 5036992 5036634.556 5035903 5038014 - gene protein_coding_gene FALSE TRUE AT3G14960.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G53290.1); similar to UCW98, putative galactosyltransferease [Hordeum vulgare subsp. vulgare] (GB:ABL11234.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.408871394023797 4.46749684100481 0.00097648150567679 1 4.83754187898714 10.6963144492312 0.408871394023797 0.0701704049969781
AT3G09700_at 3.42704139640316 3.66635573657873 4.38640849197746 4.21575245002693 4.55735265946823 4.3498733584773 3.89067945045589 3.77813945019646 3.65709671030178 3.13937954163354 3.75770102411789 3.43986919961366 3.62339367442814 3.42816225659175 3.76247576727388 3.9676404099326 3.60493182703946 3.42641607810287 3.72716212762991 0.238366913263785 0.239080115552887 0.243200532357430 0.2516049466043 0.251980934503320 0.242144405173930 0.242413493665191 0.246494271429766 0.243088402226288 0.244710663542917 0.233508265374554 0.235389912082800 0.239846111368797 0.248209043533521 0.242181624179441 0.230682004141567 0.239799795579386 0.233632148327102 0.233124321647486 3 3 - 2975102 2975821 2975538.909 2974807 2976282 - gene protein_coding_gene FALSE TRUE AT3G09700.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35795.1); similar to Os01g0157800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042072.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65026.1); similar to Os07g0192300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059099.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.402618525680688 4.46511940929942 0.00098029435929711 1 4.83419104901981 7.60105199394432 0.402618525680688 0.065236730885776
AT3G05250_at 5.73154352642449 5.70151943799283 6.36863206812981 5.93843001454204 6.58654795293771 6.25687770704455 5.34773128536994 5.15844526837224 5.57605194561355 4.81669909899506 5.50419345187538 5.51847077092415 5.43898796949919 5.40853102193337 4.65219923375075 5.48655643784335 5.66037456491455 5.6502952652419 5.55433276685033 0.226036301301287 0.223329852123356 0.223329852123356 0.230111371600698 0.231855992662946 0.236771382072737 0.235150810581598 0.230071131453203 0.240579483525035 0.230515119664767 0.225065654915882 0.230574189696725 0.228059556547199 0.22643284674076 0.234772270590231 0.223329852123356 0.24562856299781 0.233226481686240 0.236332554428317 3 3 + 1496227 1497352 1496769.1 1495603 1497475 + gene protein_coding_gene FALSE TRUE AT3G05250.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G67180.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE90136.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.451034270900921 4.46492734822905 0.000980603062792092 1 4.8339203107169 11.2515387542604 0.451034270900921 0.0994856509313898
AT3G26744_at 7.19650213969764 7.59308186117296 6.61123715495258 6.8542493314162 7.75871586125371 7.17559105387683 7.80293449098758 7.92008616745251 7.66330401268583 7.8373477284255 7.3803820778368 8.00329272660439 7.28573856736123 6.9451825669012 7.06299849789348 7.82350535374033 6.89863403035954 7.2003665902232 7.92541927746137 0.212315851861589 0.213312582811108 0.218095057356184 0.206694866830068 0.205253748227632 0.218436504812779 0.218573975700862 0.207437826530012 0.228381013436058 0.209695796490120 0.223333117636913 0.201909078073657 0.211173121564621 0.223927413852854 0.207878233679053 0.202499017806202 0.211123482555254 0.208632839737374 0.208348903563471 3 3 - 9834190 9834739 9834469.727 9833926 9836484 - gene protein_coding_gene FALSE TRUE AT3G26744.1|AT3G26744.2|AT3G26744.4 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription factor|ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Identical to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH 116) (AtbHLH116) (BHLH116) [Arabidopsis Thaliana] (GB:Q9LSE2;GB:Q2V3S3;GB:Q5PNR8); similar to basic helix-loop-helix (bHLH) family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT1G12860.1); similar to inducer of CBF expression 1 protein [Capsella bursa-pastoris] (GB:AAS79350.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.505940301306028 -4.46455532797581 0.000981201308574914 1 4.8333958760049 14.9309012030459 -0.505940301306028 0.130663657270567
AT1G66130_at 8.11368439270195 8.27696250950106 8.31618800187922 8.1170226903713 8.9863304326257 8.600845867068 9.7730450694039 9.5122181683877 8.77392548498705 9.04370048142918 8.16628412089816 8.25099184036468 8.62309252541478 8.48563958722161 8.09618796318487 8.88522804206339 9.08357806013333 8.61954463662216 9.15493229405552 0.161763514205250 0.160871661239780 0.163140355029872 0.161248133791597 0.151078654564277 0.163994395571148 0.171676865858952 0.172258078526423 0.164574917996607 0.161358897218269 0.152876456177003 0.153546558870949 0.155968259954207 0.159333801127425 0.160304966285764 0.157646930137656 0.161596740992017 0.156045411806900 0.164468708412522 1 1|0 +|/ 24619588 24620304 24619843.2 24618625 24620593 + gene protein_coding_gene FALSE TRUE AT1G66130.1 oxidoreductase N-terminal domain-containing protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G09670.1); similar to Oxidoreductase family, NAD-binding Rossmann fold, putative [Medicago truncatula] (GB:ABE90143.1); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) -0.439207596757655 -4.46380812753083 0.000982404039797814 1 4.83234248232112 17.4706226917316 -0.439207596757655 0.0920539534682826
AT2G35960_at 7.71843885210089 8.23308289516893 6.19055717043697 6.65148532171598 6.92381473725226 7.22765709402059 9.04703470584792 9.4899134967544 7.57492119360365 8.14728000370743 8.7031203611452 9.28238162204824 9.05354333834768 9.09924480056723 8.75208322343707 9.11888515689665 7.64675935562156 8.52508742422204 8.25422455861057 0.165368593101614 0.157753652236718 0.16913035525624 0.162491481949481 0.153867489689301 0.161048751497084 0.145364942536508 0.157191824731518 0.165885767106911 0.150084030625368 0.147631690554535 0.155968443346439 0.150922073064934 0.153294861382375 0.146537539772919 0.147807811814295 0.163302911232279 0.146715287142082 0.149943053459529 2 2 + 15114274 15114717 15114491.636 15114019 15115070 + gene protein_coding_gene FALSE TRUE AT2G35960.1 NHL12 (NDR1/HIN1-like 12) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. similar to NHL22 (NDR1/HIN1-LIKE 22) [Arabidopsis thaliana] (TAIR:AT4G09590.1); similar to Os12g0159600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066211.1); similar to H0913C04.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86171.1); similar to Os11g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065799.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.546621332483211 -4.46364939162973 0.000982659748352153 1 4.83211868648009 16.0676380736254 -0.546621332483211 0.151437668596382
AT3G27280_at 3.87530825635142 3.57876567614223 3.64749004115553 3.56445719826502 3.0194926819318 2.67872885204342 4.20749048600553 3.80486000426082 3.0623815428201 3.08348724594909 2.52933649126528 3.21851826697246 2.76064226955219 2.33857152240469 3.54271252187452 3.00188459644273 2.70472964475855 2.69740524696607 3.25140099999095 0.21420791405468 0.207854520474707 0.206648384198103 0.211532018137478 0.198488447450690 0.206760015339782 0.207649427777314 0.199891028831295 0.206418527440201 0.201350736398765 0.211764262713559 0.200951564837228 0.209179665408188 0.199612344722030 0.201113703357428 0.198598651452228 0.198160542057303 0.205080802443279 0.196768826907380 3 3 + 10078864 10079258 10079035.636 10078056 10079845 + gene protein_coding_gene FALSE TRUE AT3G27280.1|AT3G27280.2 ATPHB4 (PROHIBITIN 4) similar to ATPHB3 (PROHIBITIN 3) [Arabidopsis thaliana] (TAIR:AT5G40770.1); similar to mitochondrial prohibitin 1 [Petunia x hybrida] (GB:AAW83328.1); contains InterPro domain Prohibitin; (InterPro:IPR000163); contains InterPro domain Band 7 protein; (InterPro:IPR001107) -0.461131052615772 -4.46351668584251 0.000982873578485916 1 4.83193158630462 6.53789831599427 -0.461131052615772 0.105699891421426
AT1G77610_at 7.0024084770181 6.94580810189036 7.03643748028848 6.96718885924117 7.7364711981789 7.15300855684796 7.47121463137165 7.23572369930112 5.93575833274588 5.54884242519714 6.38217440291696 6.90106438448955 6.41897672454868 6.3790757571922 6.70850858249665 6.31671673713877 6.59289814797937 6.069938449934 5.2986198344712 0.198305635212839 0.195608567533498 0.194902338279728 0.196326665389925 0.195728029523823 0.211815919113289 0.194734994090732 0.202492481110110 0.214066003106440 0.200899501930510 0.195921952428275 0.192621417824829 0.198757203427067 0.210703162368402 0.209277272615066 0.195634833939814 0.204142086591227 0.198323120729221 0.201315048726201 1 1 + 29171039 29172308 29171596.909 29170104 29172667 + gene protein_coding_gene FALSE TRUE AT1G77610.1 glucose-6-phosphate/phosphate translocator-related similar to glucose-6-phosphate/phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G21870.1); similar to hypothetical protein DDBDRAFT_0187416 [Dictyostelium discoideum AX4] (GB:XP_637234.1); similar to Os08g0104900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060782.1); similar to Os04g0692000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054364.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.468125040221385 4.46086340144431 0.00098715911090145 1 4.82819013893046 13.2263206317548 0.468125040221385 0.109979418994695
AT3G18600_at 5.25769581071194 5.1365286015793 4.79532983094954 4.61531367243448 4.39418436416049 3.13312910310598 5.78100033615659 5.33002906869817 3.50829644759773 3.93450495570699 3.12677258929088 3.64989570339193 3.56582533577094 3.629238603284 3.90593912175106 3.70358058511004 2.97582084162087 3.41011466549386 3.99896252409367 0.242646809528335 0.246441593249015 0.240705195806968 0.241501101809621 0.237463187313703 0.248563289127449 0.238994943157338 0.246341636309426 0.242138798720878 0.247759047078607 0.244584834617477 0.237463187313703 0.237738385405193 0.239415287389871 0.241807823961960 0.239594246061836 0.246876780697412 0.243887281637644 0.241405803361769 3 3|0 -|/ 6399747 6400677 6400132.4 6399577 6403354 - gene protein_coding_gene FALSE TRUE AT3G18600.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 51 (EC 3.6.1.-) (RH51) [Arabidopsis Thaliana] (GB:Q9LIH9); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to Os03g0802700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051603.1); similar to ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL55992.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.729923545021237 -4.4561546202961 0.000994813016550156 1 4.82154730894096 8.46031121839806 -0.729923545021237 0.234788866824409
AT3G51010_at 8.14463942823562 8.29903424058562 7.72066044792183 7.90474698086946 7.58735586776967 7.53591720862998 7.81306207571972 8.07944532156407 7.77921160969345 7.49899492613226 7.18830362548403 7.36597217748468 6.99682214951773 7.04846186209402 7.55940063096638 7.09893766746759 6.76302389913927 7.63683900349923 7.54596528617203 0.173192362647664 0.172860351276450 0.178359542941903 0.166233562811313 0.182544266194318 0.181889959985281 0.176384972331714 0.172826400782312 0.189771481325367 0.167684529751818 0.168807039955841 0.169626143948006 0.165045662006798 0.174875262008343 0.177783758687012 0.168327594748024 0.169901132720067 0.167346943228063 0.163824334392184 3 3|0 -|/ 18957933 18958982 18958676.889 18957679 18959138 - gene protein_coding_gene FALSE TRUE AT3G51010.1 similar to Os05g0126200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054525.1) -0.398856143635578 -4.4560230322919 0.00099502779955031 1 4.82136162046791 15.2932463968899 -0.398856143635578 0.0627144894263751
AT4G33985_at 4.26630792397441 4.49330188462383 3.43349481564282 4.04846026857151 4.23869938619088 4.20910901974343 1.87378568003960 2.25230359949929 2.51575907955983 2.12715415562585 2.51721518120083 2.61664002240522 2.09725622453359 2.78330080451378 2.39991514416289 2.28600215836691 2.40673486521735 2.58700937283692 1.99078331206358 0.261462511111927 0.259148276315992 0.257227357069308 0.257183095151936 0.259210647233046 0.27197757903579 0.257542426280556 0.251483404970400 0.2497515474127 0.25388526869028 0.248035950034912 0.249108476487291 0.251546416656295 0.254220183851406 0.254528868480437 0.248438450718394 0.25010273703611 0.256117939424847 0.255889484847841 4 4 - 16288316 16288811 16288580.818 16288117 16288918 - gene protein_coding_gene FALSE TRUE AT4G33985.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15590.2); similar to Os04g0282200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052367.1); similar to Os02g0766600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048224.1); similar to Os01g0898800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045096.1); contains InterPro domain Protein of unknown function DUF1685; (InterPro:IPR012881) 0.505771569870572 4.45587046252767 0.000995276890736276 1 4.82114632028613 5.93842852432127 0.505771569870572 0.131095067022242
AT4G33510_at 11.2611743749176 11.2015681149793 11.4955313732118 11.4494000709485 11.2837044774448 11.2751873400548 11.0058174989722 10.9067080800445 10.3445644902432 10.6722276214107 10.8269345501267 10.7727943854906 10.9596424813319 10.7887360557956 11.0203610793548 10.9901128745042 11.3149496540799 11.0550962533009 10.5334674283161 0.0732488025795692 0.0739145826717606 0.076556617232348 0.0733269665407231 0.0736721509818918 0.072894604149782 0.0735642023310411 0.076872084309832 0.0802039217293418 0.0752576562798367 0.0748469441061913 0.070593677921723 0.070593677921723 0.0742184394877509 0.076364485120919 0.070593677921723 0.0732198854736117 0.0727939097022004 0.0763725576585586 4 4|0 +|/ 16117645 16118525 16118255.3 16116450 16118800 + gene protein_coding_gene FALSE TRUE AT4G33510.1|AT4G33510.2 DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE); 3-deoxy-7-phosphoheptulonate synthase|DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE) Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DHS2) [Arabidopsis Thaliana] (GB:Q00218;GB:Q9SZC8); similar to DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G39980.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G22410.1); similar to putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica] (GB:ABA54865.1); similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (GB:AAA32785.1); similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] (GB:CAA75093.1); contains InterPro domain DAHP synthetase, class II; (InterPro:IPR002480); contains InterPro domain Calycin-like; (InterPro:IPR011038) 0.365732017472330 4.45565089946382 0.000995635472629273 1 4.82083647511467 21.9763022146907 0.365732017472330 0.0215980414181878
AT3G57420_at 4.95365231862157 5.09001244584118 4.49616066656252 4.22107584872901 4.74711157819578 4.39070056265513 5.589371402057 5.17551465983548 5.13854577943544 4.86088936074411 5.21484517635973 5.5898071065858 4.55382960282604 4.90000599637256 5.01354969068572 4.80246676554542 4.61215827605314 4.90546013902171 5.4215852080036 0.234245608302043 0.246230902280328 0.235277612120777 0.241325483653860 0.235117162137398 0.249212121473935 0.23616744696898 0.248720292500704 0.262894736110699 0.236343419771604 0.235430131636796 0.236448234304518 0.245033976042396 0.239990234446312 0.240450277088555 0.239785088116541 0.241526630850807 0.238178270761961 0.24182595385820 3 3 - 21263653 21264259 21263842.727 21263396 21266253 - gene protein_coding_gene FALSE TRUE AT3G57420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16125.1); similar to Os07g0656400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060503.1); similar to Os05g0391200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055443.1) -0.464850157216489 -4.45491646104221 0.000996835915000019 1 4.81979998476312 9.87762766543337 -0.464850157216489 0.108428373755681
AT1G44350_at 6.24877828211773 6.83029422728049 3.73718334859392 4.18879256256659 3.78199198309291 3.89285913567018 3.72234361619239 3.77399860164993 3.48691711765098 3.38381002857155 3.91677514045761 3.50212597553437 4.26806266988438 3.47766019921508 3.71669022722691 3.93231876014921 3.53925034085602 3.8890787506726 3.75032390441272 0.221816445339537 0.216139383844927 0.223151238301149 0.214031180566321 0.218431207132214 0.214624209726975 0.213466618949000 0.225930117694108 0.221904845879364 0.211344060024595 0.216230372666426 0.212248237311405 0.215241197289995 0.21147108546156 0.214420882844696 0.211307435530734 0.223910238918494 0.21519767725749 0.212591805829395 1 1|0 -|/ 16837287 16838551 16837900.1 16836650 16840726 - gene protein_coding_gene FALSE TRUE AT1G44350.1 ILL6 (IAA-leucine resistant (ILR)-like gene 6); metallopeptidase encodes a protein similar to IAA amino acid conjugate hydrolase. Identical to IAA-amino acid hydrolase ILR1-like 6 precursor (EC 3.5.1.-) (Protein gr1) (ILL6) [Arabidopsis Thaliana] (GB:Q8VYX0;GB:O81702;GB:Q94LA5); similar to IAR3 (IAA-ALANINE RESISTANT 3), metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G51760.1); similar to IAA-amino acid hydrolase 6 [Brassica rapa] (GB:ABB60093.1); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain Peptidase M20D, amidohydrolase; (InterPro:IPR010168) -0.501876008270732 -4.4536112538913 0.000998973032330316 1 4.81795776462067 8.18232802375115 -0.501876008270732 0.129163187683335
AT4G34215_at 6.16703352656514 6.32951289517804 6.36028363036206 6.33190958125238 6.98720804631796 6.72730723179295 6.1298053775193 5.99449821891661 6.3206458160854 6.17847330634839 6.71824249252546 6.69906257091913 6.64549247815637 6.73545150356814 6.60932208200889 6.4739147028614 5.96732700432608 6.63967748162444 6.16249714532043 0.152963114082205 0.157595408057124 0.158768272920353 0.156823830605134 0.150549199382289 0.177529144612415 0.154678352941447 0.160803725305273 0.166818621116055 0.168351112364506 0.157840658172871 0.161048816629266 0.156897685510362 0.153774191676589 0.152093732183925 0.150389964287636 0.179001446652522 0.155261487721391 0.163079071453775 4 4|0 -|/ 16380216 16380973 16380655.9 16379607 16381311 - gene protein_coding_gene FALSE TRUE AT4G34215.1|AT4G34215.2 hydrolase| Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds. Identical to Probable carbohydrate esterase At4g34215 (EC 3.1.-.-) [Arabidopsis Thaliana] (GB:Q8L9J9;GB:O49483); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53010.1); similar to H0117D06-OSIGBa0088B06.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67955.1); contains InterPro domain Protein of unknown function DUF303, acetylesterase putative; (InterPro:IPR005181) 0.393493575733616 4.45235647821842 0.00100103210957068 1 4.81618645829956 12.7692448361965 0.393493575733616 0.0581888664167276
AT2G04520_at 9.73798674146916 9.74340293437022 9.75862492163163 10.0422086035167 9.9472432111941 9.72954699249336 9.78144424427645 9.54560021869932 9.6268689248249 9.32765839082798 10.1963375658503 10.2406561837871 10.0746606023202 10.1455478629013 10.1265571096397 10.1904816804653 9.8141871460763 9.86250680752315 9.31653353255835 0.111372567328176 0.111023573649617 0.117111790507790 0.114778375494658 0.108497194873733 0.126073642518819 0.110580788555017 0.112333508842461 0.118663673082992 0.112847047998677 0.108497194873733 0.114153133449185 0.111697685797270 0.114470764700978 0.114006305741317 0.11495811514544 0.117965139014625 0.116069318353146 0.111178730151087 2 2 - 1574880 1575110 1575000.364 1574589 1575860 - gene protein_coding_gene FALSE TRUE AT2G04520.1 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative similar to eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative [Arabidopsis thaliana] (TAIR:AT5G35680.2); similar to putative translation initiation factor eIF-1A-like [Solanum tuberosum] (GB:ABB55392.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain S1, IF1 type; (InterPro:IPR006196); contains InterPro domain Eukaryotic initiation factor 1A (eIF-1A); (InterPro:IPR001253) 0.412488658960929 4.45164005939311 0.00100220974513733 1 4.81517500697410 19.5382841430685 0.412488658960929 0.0741237968891603
AT4G23840_at 3.34740113592152 3.60326050809009 3.69599450938068 3.75576751579616 3.78694481665153 4.03802180913274 3.32231998435136 3.40701316874325 3.16401500785749 2.95358666552714 3.53817717697873 3.24941183063343 3.70256798678534 3.44279928636436 3.39318636353277 3.49836155238234 3.75257528542064 3.31625675547489 3.13667856975232 0.164219598082427 0.161750317399405 0.165363465752846 0.160690466150828 0.163290777386745 0.164067004277656 0.169708968422933 0.163411608204088 0.169605781537539 0.164781346432728 0.160267778238942 0.162176574395148 0.161463637390940 0.161416133431751 0.167705115241614 0.159500326288906 0.167192357263749 0.162820119312613 0.161113003018911 4 4|0 +|/ 12400519 12403175 12402180.176 12400355 12403413 + gene protein_coding_gene FALSE TRUE AT4G23840.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G15740.1); similar to Os05g0212200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054919.1); similar to Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor subtype; Leucine-rich repeat, cysteine-containing subtype [Medicago truncatula] (GB:ABE93295.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.400545206057319 4.45074707151177 0.00100367965813162 1 4.81391415322672 6.90530398637952 0.400545206057319 0.0645773187247093
AT1G52260_at 3.4245912099563 3.56147712624005 3.15303543589953 3.03494301810845 2.65895400073711 2.9297578167567 3.70173897280488 3.48613569443838 3.22131839925954 3.88386812945575 3.43195724544179 3.48746400279612 2.96680297001405 3.43184207172852 3.90234000356736 3.14393979817345 2.94661426392255 3.49379830785459 3.57254072640170 0.214666678174911 0.208733656206837 0.213604693529551 0.209311389830009 0.206935386670776 0.211526073535312 0.206935386670776 0.216198873342465 0.213971927533009 0.209675485707151 0.207627509160136 0.210256156765165 0.206935386670776 0.235210385107512 0.212858576596376 0.215845736904843 0.220097634235751 0.214021250021415 0.209245926736168 1 1|0 +|/ 19466044 19466758 19466306.667 19464239 19467114 + gene protein_coding_gene FALSE TRUE AT1G52260.1 ATPDIL1-5 (PDI-LIKE 1-5); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-6 (PDI-LIKE 1-6), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G16110.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09971.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.403980384209738 -4.44902066925668 0.00100652784339305 1 4.81147618472002 6.69874778502249 -0.403980384209738 0.0675806831980528
AT3G18260_at 0.891153711941129 1.58763115451157 2.26887349462974 2.04910416744244 1.47038258410216 1.38588119247286 0.854366101503284 0.827008975776484 0.495986335682584 0.96038577020521 1.08723937469093 1.35536252367770 0.739680776034863 1.17133212576329 1.13031493700001 1.07249640369586 1.03650380158804 1.27453175876224 1.14250440948778 0.224145397956313 0.228781761635389 0.236355110593328 0.237715750756882 0.229539760958904 0.232125952154378 0.224145397956313 0.224145397956313 0.240953987380966 0.231987209564197 0.242072222420361 0.229816790176533 0.233302279839254 0.229023633617007 0.224438348727403 0.229387265492184 0.225875382457436 0.226049397717422 0.224145397956313 3 3|0 -|/ 6260436 6261083 6260769.375 6260247 6261597 - gene protein_coding_gene FALSE TRUE AT3G18260.1 reticulon family protein (RTNLB9) similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10260.3); similar to Os05g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056102.1); similar to Os01g0139000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041975.1); similar to putative 24 kDa seed maturation protein-like protein [Solanum tuberosum] (GB:ABC01908.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.49783045729422 4.44828773027591 0.00100773959658281 1 4.81044100263218 2.40416261501919 0.49783045729422 0.127317938345402
AT2G15620_at 10.1203031011986 10.1112790580251 10.1954334941630 10.2563850227763 9.90258292282648 9.71571379538664 11.7365798125347 11.8914881241364 10.3637390444380 10.8686246447712 11.0293734531716 11.0071820763718 10.7960762150883 10.6301776810091 10.7642877406423 10.8600422395984 10.5678330192864 11.2314319439008 10.7812851892884 0.0958625098284657 0.0883802389449889 0.0964206819476825 0.0915036875806694 0.0893044074260159 0.102675604079991 0.0933489521284537 0.0893142713789682 0.0967661201889358 0.087239851746485 0.0897990718341025 0.0912527880328854 0.0876028956066149 0.093142208637911 0.0923019761411827 0.0904406466493008 0.089726337400048 0.0948454798993621 0.0880946334982712 2 2 + 6819205 6819667 6819394.636 6817558 6820021 + gene protein_coding_gene FALSE TRUE AT2G15620.1 NIR1 (NITRITE REDUCTASE); ferredoxin-nitrate reductase involved in the second step of nitrate assimilation Identical to Ferredoxin--nitrite reductase, chloroplast precursor (EC 1.7.7.1) (NiR) (NIR1) [Arabidopsis Thaliana] (GB:Q39161;GB:Q8H163;GB:Q8H164); similar to SIR (sulfite reductase), sulfite reductase (ferredoxin) [Arabidopsis thaliana] (TAIR:AT5G04590.1); similar to ferredoxin-nitrite reductase [Lotus japonicus] (GB:CAC06095.1); similar to nitrite reductase [Nicotiana tabacum] (GB:BAD15363.1); similar to nitrite reductase [Nicotiana tabacum] (GB:BAD15365.1); contains InterPro domain Nitrite/sulfite reductase, flavoprotein alpha-component, domains 1 and 3; (InterPro:IPR011255); contains InterPro domain Ferredoxin-nitrite reductase; (InterPro:IPR008287); contains InterPro domain Nitrite and sulphite reductase 4Fe-4S region; (InterPro:IPR006067); contains InterPro domain Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; (InterPro:IPR005117); contains InterPro domain Nitrite and sulfite reductase iron-sulfur/siroheme-binding site; (InterPro:IPR006066) -0.378899730942269 -4.44795447959062 0.00100829105955084 1 4.80997029936726 21.2572290858640 -0.378899730942269 0.0433373860346131
AT1G07970_at 4.21147681758887 4.58140197048947 4.05195186505133 4.16666149364438 3.84082662620257 4.06498095020227 4.55970885133010 4.80338011476826 4.10252245147028 4.50629547042946 3.97258036032998 3.91729797906715 3.90619388474379 3.99534291436148 4.11328256540934 4.07882468900343 3.43828849688969 3.95409837165864 4.22387363064273 0.228149886160876 0.226122742638885 0.232406635274505 0.220355262103912 0.221870757378206 0.220355262103912 0.224357913503804 0.22070901505449 0.227431881305416 0.221470379496394 0.223344778314171 0.225423950942261 0.226410924956162 0.229818890444622 0.220355262103912 0.220355262103912 0.226270186049681 0.227921362612161 0.220355262103912 1 1 - 2469538 2470249 2469857.364 2469283 2472625 - gene protein_coding_gene FALSE TRUE AT1G07970.1 similar to MGC83764 protein [Xenopus laevis] (GB:AAH76809.1); similar to Os03g0288800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049788.1); contains domain FAMILY NOT NAMED (PTHR21780); contains domain gb def: T6D22.6 (PTHR21780:SF1) -0.431730948966797 -4.44721428191395 0.00100951707163213 1 4.80892473376314 8.38482484042487 -0.431730948966797 0.0881770425111456
AT1G25260_at 7.91070804027935 8.38113213529688 7.41820616366366 7.66055284101071 7.92976732376454 8.01510097009314 8.05607851392025 8.40698950793418 7.06327281568092 6.79634555333291 6.27377829233175 7.10138453582024 6.67339163812516 6.27326909810622 7.557910571819 6.2685639290158 6.61622859699104 6.19223064616117 7.5098563243109 0.188182139031978 0.186914830288534 0.196039828074364 0.191047655258348 0.184608003555736 0.182005652978036 0.181462127985768 0.181878755865839 0.210901715743914 0.192285711075099 0.184880524540208 0.179222741416958 0.193615592322435 0.192332188568770 0.182494244077294 0.188255337172282 0.19148590169839 0.180724447540011 0.179730629558044 1 1|0 -|/ 8854208 8855365 8854812.778 8853946 8855859 - gene protein_coding_gene FALSE TRUE AT1G25260.1 acidic ribosomal protein P0-related similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1); similar to unknown [Solanum tuberosum] (GB:ABA40425.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790) -0.468191896143299 -4.4469262707848 0.00100999453610795 1 4.80851787929365 14.8436933843226 -0.468191896143299 0.110869992702868
AT1G09940_at 4.89013124863716 5.14621045143868 5.22004163898473 5.36812134533907 5.09444304960052 4.92313712622417 4.42943429599165 4.60166304987483 5.04491494616125 4.09271770857191 4.74596620541408 4.73068743447186 4.47662425317474 4.71685793308403 4.9520657491195 4.5093248365508 4.58906292955767 4.84330620141501 3.69042666190395 0.215818447720167 0.217632249649594 0.220655294452075 0.219026019257696 0.213244086485997 0.225759710069798 0.212977374948101 0.224868998597675 0.216910869281523 0.219601598088251 0.217218481829598 0.210001711138829 0.221685082629140 0.209801555501635 0.210133832848467 0.211967655202194 0.223887473723896 0.209801555501635 0.224516149542372 1 1 - 3237295 3237785 3237586.545 3236997 3239556 - gene protein_coding_gene FALSE TRUE AT1G09940.1 HEMA2; glutamyl-tRNA reductase Encodes glutamyl-tRNA reductase. Identical to Glutamyl-tRNA reductase 2, chloroplast precursor (EC 1.2.1.70) (GluTR) (HEMA2) [Arabidopsis Thaliana] (GB:P49294;GB:O04950); similar to HEMA3, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT2G31250.1); similar to HEMA1, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT1G58290.1); similar to glutamyl-tRNA reductase precursor [Glycine max] (GB:AAD16897.1); similar to Glutamyl-tRNA reductase 2, chloroplast precursor (GluTR) (GB:P49294); similar to glutamyl-tRNA reductase (GB:AAA19118.1); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Glutamyl-tRNA reductase; (InterPro:IPR000343); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) 0.402021599593815 4.44526249522321 0.00101275738506165 1 4.8061673028542 9.44490113329176 0.402021599593815 0.0662400766305954
AT3G17020_at 11.8371312023317 11.8137054876451 11.9335632316010 11.9348463406175 12.0955062621565 12.0411114135299 11.3277886897966 11.1912510990846 10.8661291369024 11.1438844200461 11.4083071706279 11.1562359650654 11.3396999736834 11.1812392909220 11.3177747632388 11.2103093903712 11.4962342063803 11.3326495758268 11.0814441470397 0.0733827822371776 0.0710294777301923 0.0720719738342907 0.0725049272325973 0.0714066222729201 0.076385460098348 0.0694459758729674 0.0718024304790313 0.0850829207957672 0.0731055827906622 0.0694459758729674 0.0697620384834612 0.0754246317006543 0.0725094724568413 0.0712235759740158 0.0694459758729674 0.0696340155745531 0.0720066530805789 0.0728840201173073 3 3|0 -|/ 5802743 5803982 5803349.2 5802555 5804163 - gene protein_coding_gene FALSE TRUE AT3G17020.1 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to Os05g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054704.1); similar to USP family protein [Triticum aestivum] (GB:AAX13276.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.366804041473374 4.44489634105910 0.00101336648139251 1 4.80564993980068 22.9397590625173 0.366804041473374 0.0257565132684216
AT1G09910_at 7.4702248854051 7.52401368335582 7.87355975636964 7.79909606099639 8.0181842219883 8.01221873976478 7.00720228251105 6.32595090105973 6.59811412073224 6.96923859715342 6.96286854340214 6.63026400840531 6.89972420205576 6.95540236510276 6.28899714886077 7.09981357158008 7.48862208256547 7.0294861569419 6.82981291850117 0.194893111076781 0.185688776476784 0.196394636829244 0.193567271377568 0.190496724075062 0.200316975720502 0.189799697986470 0.194918930683048 0.207123950511820 0.187840425551152 0.19172973685694 0.188203709551702 0.185688776476784 0.19594209396577 0.207551006837097 0.186406429488514 0.192713474578786 0.210055856296394 0.197404914824628 1 1 - 3220161 3220833 3220466.273 3220037 3224543 - gene protein_coding_gene FALSE TRUE AT1G09910.1 lyase similar to lyase [Arabidopsis thaliana] (TAIR:AT2G22620.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09880.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G37950.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96404.1); similar to putative rhamnogalacturonate lyase [Triticum tur (GB:ABI15897.1); contains InterPro domain Rhamnogalacturonate lyase; (InterPro:IPR010325) 0.48212940221609 4.44424880992845 0.00101444458894786 1 4.80473494643822 14.3630325524280 0.48212940221609 0.118965120357061
AT3G59420_at 3.49022012371748 4.0582229788719 2.84094346853342 2.73904656062547 3.08441668001846 3.49447681054826 4.01692572774321 4.14887191922068 3.86542985153606 3.84146336574045 3.69042628934231 4.05179465511067 4.28908117069552 3.42945068024884 3.61090715409777 3.69641342382978 4.0428349818246 3.46617404714361 3.93479678545782 0.213997381675871 0.208026405417778 0.221720277058868 0.210487423223541 0.203038132054311 0.215140025073023 0.201398673635999 0.207296945939112 0.220316155627947 0.206059112620685 0.206053704752797 0.20198954460183 0.206992558576062 0.20298232782126 0.20661934772861 0.212984064543419 0.203994079501988 0.201846939086359 0.213271030361521 3 3 - 21970866 21971395 21971153 21970624 21974018 - gene protein_coding_gene FALSE TRUE AT3G59420.1 ACR4 (ARABIDOPSIS CRINKLY4); kinase Encodes a membrane localized protein with similarity to receptor kinases which is involved in epidermal cell differentiation. Mutants have disorganized ovule integument growth and abnormal sepal margins.Conflicting data regarding the role of the kinase domain- which may or may not be required for function. Complementation studies indicate that the C-terminal domain is also not required for signaling function.May be regulated by protein turnover which is mediated by endocytic processes. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G39180.1); similar to Os03g0637800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050726.1); similar to crinkly4-like protein [Musa acuminata] (GB:AAR96009.1); similar to Putative receptor protein kinase CRINKLY4 precursor (GB:O24585); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain TNFR/CD27/30/40/95 cysteine-rich region; (InterPro:IPR001368) -0.492383670707525 -4.44417676231919 0.00101456461909250 1 4.80463313531741 7.31673985092557 -0.492383670707525 0.124619705996545
AT4G17240_at 2.55275765237567 2.65240673065069 2.06913157278394 1.99184519153363 2.24003906505078 2.34948266916980 2.89656786660602 3.2668581588079 2.83024352179511 3.36865083915892 3.46105973931436 3.35602367205318 2.61471945976318 3.10823068031452 3.57041902042027 2.37784291070625 2.01374658727225 2.96830230808000 3.00440300622104 0.183733846217714 0.190395275165988 0.184620135091412 0.180776288832264 0.179575897924234 0.189484054132303 0.180804056673845 0.190826601595637 0.185726879982591 0.178754172244729 0.180395641227447 0.188931649298313 0.179455151444149 0.182674900325685 0.185488420595921 0.186130953571346 0.200603572448397 0.182047242190998 0.188989695324075 4 4|0 -|/ 9666859 9667610 9667284.9 9666700 9668386 - gene protein_coding_gene FALSE TRUE AT4G17240.1 similar to hypothetical protein 31.t00013 [Brassica oleracea] (GB:ABD65111.1) -0.406747859646696 -4.44259842013388 0.00101719785536675 1 4.80240254973096 5.50316553152173 -0.406747859646696 0.07029426902274
AT3G26680_at 2.57459468588511 2.9097797417286 2.84450495827441 3.23722499304464 3.50040959827174 3.23442121406805 1.89366264532226 2.33028408731370 2.93529360682312 2.09620434577945 2.57528506340937 3.32629253859087 2.24859258074106 2.92028992958495 2.4088282043977 3.21738714075866 2.39322440893854 2.90448314775375 2.58616102731821 0.207070149350057 0.208651575356051 0.208362164418657 0.205253113212796 0.219648957795409 0.207870192609363 0.201319138867708 0.216190570582514 0.203363478447255 0.203945572848901 0.206050355140943 0.204168728325501 0.206671845491561 0.218527527736523 0.203883119140423 0.202948962412505 0.211852791461456 0.209774677045542 0.209720341135146 3 0|3 /|+ 9803756 9804695 9804043.714 9802451 9805519 + gene protein_coding_gene FALSE TRUE AT3G26680.1|AT3G26680.2|AT3G26680.3 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) involved in a SNM-dependent recombinational repair process of oxidatively induced DNA damage. Identical to DNA cross-link repair protein SNM1 (AtSNM1) (SNM1) [Arabidopsis Thaliana] (GB:Q38961;GB:Q96280); similar to sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45700.1); similar to DNA repair metallo-beta-lactamase [Medicago truncatula] (GB:ABD33168.1); contains InterPro domain DNA repair metallo-beta-lactamase; (InterPro:IPR011084) 0.493569058825281 4.43622153867987 0.00102791002373454 1 4.79338624175891 5.4598690088613 0.493569058825281 0.125743732679618
AT3G12810_at 1.81859412965823 1.89976987899535 1.82968062919365 1.92177137608989 2.16003768170563 2.06733199323999 2.08363999290714 1.83426774346705 1.24484025145131 0.69509286737951 1.52407416378510 1.86664280233428 1.92351960956385 1.62540074163320 1.54688110551324 1.41085475222101 1.92433503384539 1.54528182329935 1.02280632048287 0.216655032144135 0.212278072613423 0.213880414932229 0.2094426594933 0.221410094909439 0.217016006756677 0.212735857070015 0.208721457844908 0.215488246244121 0.215477124574924 0.213162560590667 0.208721457844908 0.215686257979967 0.214633538376749 0.212092262309324 0.208721457844908 0.212044053875145 0.226177174935628 0.209639516394659 3 3 + 4071046 4071446 4071304 4065586 4074085 + gene protein_coding_gene FALSE TRUE AT3G12810.1 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1); ATP binding / DNA binding / helicase encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root. similar to transcriptional activator, putative [Arabidopsis thaliana] (TAIR:AT3G57300.1); similar to putative photoperiod independent early flowering1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07677.1); similar to hypothetical protein CIMG_07734 [Coccidioides immitis RS] (GB:XP_001240571.1); similar to hypothetical protein UM05485.1 [Ustilago maydis 521] (GB:XP_761632.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain HSA; (InterPro:IPR006562); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.384465712360109 4.4361047600895 0.00102810729401027 1 4.79322106502223 3.28111346172161 0.384465712360109 0.0507056282112969
AT2G46450_at 9.35729177654149 9.20980743506618 9.39780016082207 8.99253287633653 8.89794209971379 8.50365514046793 9.01855544466307 8.78951664583552 9.43721591770725 9.31110112248651 8.46018709639813 8.74643470465957 8.45242770504699 8.68313189505593 8.18032746882511 8.98119944361809 8.25568029349692 8.69017682516768 9.26041152929754 0.105441137330455 0.0978335968819858 0.0976022647317916 0.0978169875843573 0.101928018621617 0.0992190378780416 0.0988732798049942 0.104125819873103 0.100631668005023 0.0987968948213008 0.105077724465570 0.098497731800996 0.100675264986441 0.0997858980794418 0.0995924154581522 0.100588996299956 0.101414306949192 0.101693685833869 0.097040853963197 2 2 + 19074795 19075400 19075187.455 19072789 19075437 + gene protein_coding_gene FALSE TRUE AT2G46450.1 ATCNGC12 (cyclic nucleotide gated channel 12); cyclic nucleotide binding / ion channel Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. Identical to Probable cyclic nucleotide-gated ion channel 12 (Cyclic nucleotide- and calmodulin-regulated ion channel 12) (CNGC12) [Arabidopsis Thaliana] (GB:Q8GWD2;GB:Q9SKD5); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to ATCNGC11 (cyclic nucleotide gated channel 11), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46440.1); similar to Probable cyclic nucleotide-gated ion channel 12 (Cyclic nucleotide-and calmodulin-regulated ion channel 12) (GB:Q8GWD2); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.462928716827514 -4.43349477395676 0.00103252664232698 1 4.78952879733582 17.9671069651961 -0.462928716827514 0.108613576729923
AT1G10760_at 11.7078291278082 11.4967039870078 11.5362898019980 11.4324150103208 11.8931615481522 11.6497641673309 11.0278755824329 10.9296601216979 10.6204031692657 11.0366978424224 11.0849940610816 10.9261712651063 11.3427443792564 11.4048285602321 11.0635089274046 11.1357825010502 11.3999175065106 11.3755813360383 10.6359116738090 0.0602158045897012 0.0592457827866185 0.0605688305526579 0.0606224478817592 0.0617626498614107 0.0634131154108158 0.0601481230402466 0.0630108058462096 0.0675063091692961 0.0592457827866185 0.0592457827866185 0.0605108869609763 0.059353640679287 0.0609447245091574 0.0599987330855719 0.0592457827866185 0.0646915690685284 0.0638448267826984 0.0595507662238436 1 1|0 -|/ 3581306 3581994 3581658.111 3581035 3590044 - gene protein_coding_gene FALSE TRUE AT1G10760.1 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. Identical to Alpha-glucan water dikinase 1, chloroplast precursor (EC 2.7.9.4) (Protein starch-related R1) (Protein starch excess 1) (GWD1) [Arabidopsis Thaliana] (GB:Q9SAC6;GB:Q93VD0;GB:Q940Z0;GB:Q9FPP2); similar to ATGWD2/GWD3/PWD (PHOSPHOGLUCAN, WATER DIKINASE) [Arabidopsis thaliana] (TAIR:AT4G24450.1); similar to starch associated protein R1 [Solanum tuberosum] (GB:AAK11735.1); similar to Alpha-glucan water dikinase, chloroplast precursor (Starch-related R1 protein) (GB:Q9AWA5); similar to Alpha-glucan water dikinase, chloroplast precursor (Starch-related protein R1) (GB:Q8LPT9); contains InterPro domain Pyruvate phosphate dikinase, PEP/pyruvate-binding; (InterPro:IPR002192) 0.394871966233225 4.43312604740659 0.00103315259249801 1 4.78900708021245 22.4497267328023 0.394871966233225 0.0610008139062401
AT4G27470_at 7.06274211396947 8.25229012903977 7.41702034839319 8.2257765901932 8.36143482774836 8.27529806384372 6.07867043294001 6.90724436142377 7.15907949193132 6.2998217401933 7.2001652610387 6.77232500278732 7.64670367643999 7.68500009020042 6.14648657965093 7.59351863798319 7.65417746358576 7.62895567451293 6.28248185134573 0.197267402959079 0.189523265600252 0.194407768849395 0.200659371864827 0.198603187934170 0.204703110780194 0.199324029236794 0.188923256180243 0.192882469891550 0.20079499409743 0.190362669126752 0.194105436532903 0.191498771221794 0.191291209718406 0.199179769113495 0.188923256180243 0.204271710116466 0.192582305727357 0.193293872408116 4 4 + 13735766 13736206 13736001.636 13735005 13736524 + gene protein_coding_gene FALSE TRUE AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to putative RING protein [Populus x canescens] (GB:AAN05420.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.852550609326407 4.43309692913724 0.00103320204063421 1 4.78896587934619 14.5082483964931 0.852550609326407 0.287659613811003
AT3G60520_at 8.33967792741392 8.64759931464175 7.5952560529149 7.63868490899853 8.66669216441845 8.48209596589033 8.27903450724741 8.44306407543681 6.96414507505343 7.33280451763728 6.87483579424919 6.9412743932282 7.16368274987748 6.3063405673738 5.84577748621684 6.41408871515349 7.3515920327472 6.88234192719977 7.29904666981512 0.212572965503083 0.208806585756080 0.202596827469495 0.207068006269959 0.208424429993439 0.2095666497028 0.20441952872055 0.208287910404723 0.212417861262593 0.204850016119671 0.210876614005240 0.205058433544786 0.205242059394527 0.222038272431188 0.214338691306827 0.209721719949063 0.213074120932841 0.205424407980212 0.206608721778904 3 3|0 -|/ 22372777 22373379 22372996.1 22372505 22373554 - gene protein_coding_gene FALSE TRUE AT3G60520.1 zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02070.1); similar to hypothetical protein MtrDRAFT_AC151481g3v1 [Medicago truncatula] (GB:ABE86976.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) -0.403917697854475 -4.43302591482984 0.00103332264630578 1 4.78886539713398 15.2220916791658 -0.403917697854475 0.0687188503874419
AT1G50920_at 8.30166457896204 8.50625491162577 8.05831505427255 7.92672878014519 8.00235704287373 8.04375688175308 8.07368784278321 8.46094482521631 7.37655509253852 7.833775020478 7.21522821293243 7.44349114208662 7.1900382455406 6.68918132737036 7.75385445986537 7.14129359216846 7.08241140016012 7.01903635502039 7.88898406372131 0.199361165075814 0.195542818058636 0.196254561472151 0.195763114644882 0.195283954515352 0.204703072519309 0.197554393652472 0.192747032874465 0.200611199820150 0.196500576404366 0.206903221831892 0.199247362604911 0.195554068126143 0.199266670910469 0.195903816842140 0.202521896060766 0.202671898917981 0.2037422647597 0.202113980387825 1 1 + 18875750 18876165 18875946.455 18873807 18876598 + gene protein_coding_gene FALSE TRUE AT1G50920.1 GTP-binding protein-related Identical to Probable nucleolar GTP-binding protein 1 [Arabidopsis Thaliana] (GB:Q9C6I8); similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G10300.1); similar to GTP-binding protein CRFG/NOG1 (ODN superfamily) (ISS) [Ostreococcus tauri] (GB:CAL52519.1); similar to putative GTP binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06946.1); similar to putative nucleolar GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35220.1); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Nucleolar GTP-binding 1; (InterPro:IPR010674); contains InterPro domain NOG, C-terminal; (InterPro:IPR012973) -0.417901575119294 -4.43288348812583 0.00103356457827001 1 4.78866386691422 15.6175078567735 -0.417901575119294 0.0794647096708028
AT2G45830_at 4.16594001968218 3.6992991486279 4.58842900841407 4.30882698867145 5.32584747849643 5.55865800468782 4.66214314156312 4.20505738007782 4.4090094578961 4.37214901640577 4.53937002216715 4.31039895153298 5.07266008839444 4.47371313659927 4.65170151947951 5.09293135325866 5.11479248139604 4.98813247372952 4.84903215478855 0.220187509722723 0.223910103928096 0.219730985327309 0.219454903326011 0.233615041610013 0.232067374469623 0.225521352784403 0.226815653526432 0.229386755790381 0.225363505620955 0.219940935803805 0.222234781054009 0.217269374699724 0.221383914684273 0.224611025456121 0.217269374699724 0.224964923945112 0.217269374699724 0.220517546419000 2 2|0 +|/ 18874768 18875287 18875067.2 18873135 18875616 + gene protein_coding_gene FALSE TRUE AT2G45830.1|AT2G45830.2 DTA2 (DOWNSTREAM TARGET OF AGL15 2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61270.1); similar to OSIGBa0159I10.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67462.1); similar to Os02g0642700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047557.1); similar to Lipopolysaccharide-modifying protein [Medicago truncatula] (GB:ABD33425.1); contains InterPro domain Lipopolysaccharide-modifying protein; (InterPro:IPR006598); contains InterPro domain Protein of unknown function DUF821, CAP10-like; (InterPro:IPR008539)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61270.1); similar to OSIGBa0159I10.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67462.1); similar to Lipopolysaccharide-modifying protein [Medicago truncatula] (GB:ABD33418.1); similar to Os02g0642700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047557.1); contains InterPro domain Lipopolysaccharide-modifying protein; (InterPro:IPR006598); contains InterPro domain Protein of unknown function DUF821, CAP10-like; (InterPro:IPR008539) 0.499698037267956 4.43046847755071 0.00103767587855797 1 4.78524617634005 9.22620483611918 0.499698037267956 0.129393416101367
AT4G25810_at 1.52200975686737 1.73370377251572 3.51801488483655 3.25276723437313 1.84301351957446 1.76573136767807 1.19781859308763 1.13747112770416 1.90294371476305 1.92436712254859 1.61573491912983 0.995816983879353 1.07790458720663 1.26724343435212 1.32652177931341 1.30305367755517 2.06696615616126 1.56609901224842 1.60290137073658 0.227076924318914 0.228068120094542 0.246760973847732 0.238039664298912 0.234784116306466 0.227856876415131 0.233582166371667 0.226766434053887 0.228366292444045 0.230754422670358 0.226348890759646 0.231450186286025 0.241856280314357 0.241405419876381 0.227336567926550 0.231218604105418 0.228998425794149 0.229755652716505 0.231372307348201 4 4|0 +|/ 13129116 13129698 13129490.556 13128654 13129893 + gene protein_coding_gene FALSE TRUE AT4G25810.1 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR6) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor (EC 2.4.1.207) (At-XTH23) (XTH-23) (XTH23) [Arabidopsis Thaliana] (GB:Q38910;GB:Q8W4M6); similar to TCH4 (TOUCH 4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G57560.1); similar to putative xyloglucan endotransglycosylase [Cucumis sativus] (GB:CAD87535.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.394738885893268 4.4299951569528 0.00103848366639580 1 4.78457622627729 3.60256043445306 0.394738885893268 0.0611314270873955
AT1G48370_at 4.21221976590624 3.93091024271868 4.83484632395859 4.47545441187471 3.40475567517135 3.72009841889413 3.04391825921532 3.34414246789374 3.63730237789716 2.96182314118883 3.60644813449404 3.68996279683229 3.38046505085773 3.52201255771314 4.00267495897021 3.78028765803148 3.6073350279019 3.66174043188338 3.01780838670847 0.231924782453454 0.223577301568242 0.231621696014761 0.230465462495857 0.218122250729583 0.222868425095318 0.221212935455293 0.224844288230668 0.224242247733993 0.222513122493763 0.222839852576404 0.218122250729583 0.219841472251652 0.222967714527168 0.225415987851143 0.218680549778123 0.224893020759683 0.218122250729583 0.221700378678138 1 1 + 17880337 17880892 17880526.909 17878180 17881065 + gene protein_coding_gene FALSE TRUE AT1G48370.1 YSL8 (YELLOW STRIPE LIKE 8); oligopeptide transporter Arabidopsis thaliana metal-nicotianamine transporter YSL4 similar to YSL1 (YELLOW STRIPE LIKE 1), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G24120.1); similar to YSL5 (YELLOW STRIPE LIKE 5), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G17650.1); similar to YSL7 (YELLOW STRIPE LIKE 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G65730.1); similar to YSL transporter 1 [Thlaspi caerulescens] (GB:ABB76761.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE44205.1); similar to YSL transporter 2 [Thlaspi caerulescens] (GB:ABB76762.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) 0.463356107680951 4.42874443459602 0.00104062137655374 1 4.78280574357714 7.30179842687927 0.463356107680951 0.109158022658677
AT2G17300_at 2.62544205475659 2.93670792236087 1.72023489805591 1.98410246839042 2.26735736130362 2.40041267481624 3.4518669941025 4.10852495976781 3.66393780522254 3.20873061615261 3.70264923655556 3.67462275036422 4.55213640702153 4.02676093920186 2.85010575767933 3.99134658451628 3.60121522169868 3.66147412613688 3.90494568217354 0.259732927715916 0.249434048352845 0.260447712585348 0.268054746292931 0.253395336020648 0.255522888742284 0.262386552805566 0.2814360200617 0.266680897105063 0.249434048352845 0.257994086412238 0.249434048352845 0.257462451960412 0.256727671828151 0.257771281082035 0.252620251666877 0.249434048352845 0.257549066767011 0.255694804743634 2 2 - 7529606 7529940 7529766.727 7529483 7530115 - gene protein_coding_gene FALSE TRUE AT2G17300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35320.1); similar to Os02g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047925.1); similar to Os08g0511400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062213.1) -0.511303894362415 -4.42670186578327 0.00104412242975302 1 4.77991379211296 6.36186962290076 -0.511303894362415 0.135758701919107
AT3G03710_at 7.70223954015943 7.61269569400152 6.98441221039527 7.11614704320873 7.15556434852962 7.10001308218282 8.17291365738117 7.74574690705238 6.67332805971219 6.85799911646626 6.21464427332078 7.28061169394722 7.01294436039855 6.5894290723468 7.16374183162946 7.13161975942491 6.66417819451061 6.14679372752533 7.14063252517723 0.177430751746724 0.180674282226376 0.178882318926194 0.180824760253854 0.181282302428206 0.183997100311775 0.177580547273058 0.181112948599897 0.185092425885581 0.178751230406799 0.189542266744619 0.177323668738282 0.193434861109259 0.183514999644728 0.185794264220027 0.178138203673374 0.188388472005792 0.189762206936044 0.185721139283091 3 3 + 924138 924764 924445.545 919549 925345 + gene protein_coding_gene FALSE TRUE AT3G03710.1 RIF10 (RESISTANT TO INHIBITION WITH FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. similar to polyribonucleotide nucleotidyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G14580.1); similar to polynucleotide phosphorylase [Pisum sativum] (GB:AAC50039.1); similar to polyribonucleotide phophorylase (GB:AAC49669.1); similar to 100RNP protein (GB:2208281A); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Exoribonuclease; (InterPro:IPR001247); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.417261324108393 -4.42588515068395 0.00104552577281194 1 4.77875726086164 14.2817908593255 -0.417261324108393 0.0794789302680047
AT1G77450_at 2.27408210337666 2.00828359973888 3.07996106206510 2.89875789281021 3.10547165997896 2.65603178737849 2.86799771398492 2.43968624664643 2.15017817171875 2.38505512125239 2.13210699100168 1.98209357806022 2.86101917590982 2.6555119615154 1.94503484667864 2.9603879946653 3.30530944892502 2.85844260267893 1.93969006906798 0.191235693683136 0.191385332849482 0.197330598505955 0.197762076953172 0.189735465776068 0.198733924167245 0.190846198200087 0.197423546121467 0.191458195467636 0.192478904925325 0.189735465776068 0.193546289854818 0.193805862409165 0.193190131521797 0.190615190297404 0.189735465776068 0.205874642325073 0.201559012257503 0.193603473584005 1 1 + 29105268 29105834 29105660.273 29104848 29106155 + gene protein_coding_gene FALSE TRUE AT1G77450.1 ANAC032 (Arabidopsis NAC domain containing protein 32); transcription factor similar to ATAF1 (Arabidopsis NAC domain containing protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G01720.1); similar to NAC-domain protein 14 [Brassica napus] (GB:AAP35055.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.483361861102234 4.42191538430447 0.00105237517866740 1 4.77313419740865 5.03918206438533 0.483361861102234 0.121005971895934
AT1G12730_at 5.2858923254733 5.18337141565215 5.13627621428555 4.99129806419364 6.58531679423563 5.23337478729248 4.21025567122355 2.93482769185018 2.49932302911251 3.06992518947018 3.72685188455935 3.56387600454449 3.72977615822905 4.08656023175157 3.3879157731201 3.39664745493354 4.66622395266795 3.21607496076319 3.22056168355206 0.289896026111472 0.280136223706124 0.280167545830392 0.277149402368063 0.285906736186337 0.293084670373080 0.279365081652173 0.280354930239646 0.280058405120059 0.275861051542282 0.280102915208338 0.27972178932197 0.280283371281081 0.278018578438439 0.278669526775475 0.275861051542282 0.287456621055344 0.283948777471889 0.275861051542282 1 1|0 +|/ 4336357 4337555 4336979.5 4334613 4337842 + gene protein_coding_gene FALSE TRUE AT1G12730.1|AT1G12730.2 cell division cycle protein-related similar to cell division cycle protein-related [Arabidopsis thaliana] (TAIR:AT1G63110.1); similar to putative transamidase complex subunit PIG-U [Oryza sativa (japonica cultivar-group)] (GB:BAD81713.1); similar to Os02g0688900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047781.1); contains InterPro domain GPI transamidase subunit PIG-U; (InterPro:IPR009600)|similar to cell division cycle protein-related [Arabidopsis thaliana] (TAIR:AT1G63110.2); similar to putative transamidase complex subunit PIG-U [Oryza sativa (japonica cultivar-group)] (GB:BAD81713.1); similar to Os02g0688900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047781.1); contains InterPro domain GPI transamidase subunit PIG-U; (InterPro:IPR009600) 0.937391928739135 4.42166890523462 0.00105280200134098 1 4.7727849808622 8.27091533883384 0.937391928739135 0.323107142475184
AT2G17740_at 3.58966837993545 4.03523915968559 2.17826817068555 2.24849415099192 2.73871297523385 2.74579231355216 1.51857846415542 1.31692312007887 1.90343188452589 2.04916787665708 1.37834320157435 0.827246639003126 1.13994413408585 1.11990768215679 1.13259192735674 1.15980843540860 1.12512987801340 0.761078826103586 1.42917147781646 0.280846710575182 0.296662247223634 0.260583855057315 0.26139513653007 0.267208836058521 0.269124735096697 0.258855997041159 0.256749431013153 0.257215189028021 0.256749431013153 0.270575114210305 0.260258938409304 0.259241412562745 0.261512029036227 0.262676640589046 0.257632914010746 0.256749431013153 0.270892004006523 0.267507031001332 2 2 - 7714222 7714712 7714476.727 7713978 7714943 - gene protein_coding_gene FALSE TRUE AT2G17740.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G44370.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21314.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.425351392109149 -4.42156493641734 0.00105298209644364 1 4.77263767272506 3.98367463518782 -0.425351392109149 0.0855142232532054
AT1G18080_at 10.8398371266009 10.9378940267811 10.4596733361740 10.3487152014361 10.3812620682069 10.2877963166229 11.0106118696008 11.1279560673082 10.4831689546021 10.5052077397759 10.3378981070676 10.6647529843940 10.4256073998058 9.92275332672719 10.9491411081907 10.0365166494981 10.1350682209416 10.1917636931237 10.4095816590113 0.0647719371773711 0.0629751016999024 0.0629889784515629 0.0650720186096224 0.0648947250641785 0.0640280200951314 0.0633707669087858 0.0653978698213682 0.0728335808860401 0.0661072920825585 0.0645940778678906 0.0629751016999024 0.0645443711457161 0.0790867434572355 0.0651641096250421 0.0643911314262577 0.0663008215459369 0.063848808415196 0.0642370682938305 1 1 + 6222781 6223165 6222919.455 6222194 6224144 + gene protein_coding_gene FALSE TRUE AT1G18080.1 ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. Identical to Guanine nucleotide-binding protein subunit beta-like protein (WD-40 repeat auxin-dependent protein ARCA) (ARCA) [Arabidopsis Thaliana] (GB:O24456;GB:Q9LDI1); similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.371380736770345 -4.42143220634585 0.00105321205885648 1 4.77244961163423 21.0736801535989 -0.371380736770345 0.0364781707023217
AT3G14190_at 1.65573934864938 1.31843981945378 1.88324316120135 1.82926893162083 1.29801123372165 1.34466334228370 1.60337147498744 1.83079612090667 1.38927467555339 0.799088837955911 1.9553387112352 2.32076259827171 2.18173968269210 2.36023576128191 2.22876965262933 1.85240137982535 1.83946524211946 2.49163237680977 1.79622820576813 0.182905462889973 0.182905462889973 0.185211922942414 0.186195328748379 0.182905462889973 0.190137718531254 0.187898823264697 0.191613694031166 0.190711097808553 0.195977998488365 0.186586021168200 0.187030525847646 0.185107606236310 0.188623561573160 0.186520131254778 0.185997960647539 0.193616059543266 0.191405009866732 0.187043012753927 3 3|0 +|/ 4710941 4711773 4711409.4 4710490 4711976 + gene protein_coding_gene FALSE TRUE AT3G14190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12360.1) 0.406152956028262 4.41991556197497 0.00105584347608403 1 4.77030051916351 3.33643688678672 0.406152956028262 0.0714744209523202
AT3G05710_at 4.84996513975162 4.70574513482241 5.32584102033952 5.11203905448392 4.78356356056517 4.6358067417535 3.96216523308735 3.90220422681581 4.52037715093041 4.0200531864877 4.70002719472844 5.0139104670296 3.94095150046278 4.55372768811394 4.40726274032763 4.48779674747753 4.29897884444538 4.54220527562648 4.45817710016216 0.214640197614666 0.217201936543447 0.218006389924343 0.222470625983614 0.214552829447059 0.218534128296787 0.218467046283277 0.218602472389794 0.226115818474358 0.219863212911173 0.221162467857748 0.217377424302379 0.216724286000283 0.218484238993487 0.224002769542121 0.214552829447059 0.232396125669356 0.219497385108210 0.230786304329259 3 3|0 +|/ 1685980 1687150 1686646 1685002 1687562 + gene protein_coding_gene FALSE TRUE AT3G05710.1|AT3G05710.2 SYP43 (syntaxin 43); t-SNARE member of SYP4 Gene Family Identical to Syntaxin-43 (AtSYP43) (SYP43) [Arabidopsis Thaliana] (GB:Q9SUJ1;GB:Q8L7J6;GB:Q9M9X6); similar to SYP41 (SYNTAXIN OF PLANTS 41), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G26980.2); similar to putative syntaxin of plants 41 [Oryza sativa (japonica cultivar-group)] (GB:BAD67916.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989)|Identical to Syntaxin-43 (AtSYP43) (SYP43) [Arabidopsis Thaliana] (GB:Q9SUJ1;GB:Q8L7J6;GB:Q9M9X6); similar to SYP41 (SYNTAXIN OF PLANTS 41), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G26980.2); similar to putative syntaxin of plants 41 [Oryza sativa (japonica cultivar-group)] (GB:BAD67916.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.384765536041308 4.41989162736893 0.00105588505849405 1 4.77026660066724 9.07265461552069 0.384765536041308 0.0524724143138086
AT4G39040_at 9.65136081297181 9.4562189635468 9.17920580914465 9.03111559732315 9.38286459645064 9.01877997080482 9.93897952687943 9.72579096281458 10.0471212553552 9.95911213462185 9.61375207619986 9.71170410188926 9.56373611799314 9.6083519379667 10.0389076725036 9.61659396911963 9.3537158586191 9.62940587169733 9.84097963969974 0.0936373108379581 0.092398422000518 0.096043096890040 0.0980124651310118 0.0941784369164433 0.099131563133789 0.093983918379249 0.0958284234576987 0.0946919508387144 0.0924195013142581 0.0930724635689468 0.0906838825120535 0.0915578610876145 0.0906838825120535 0.094736321124524 0.0927281040932982 0.0906838825120535 0.0918314671052403 0.0940089147678017 4 4 - 18189272 18190066 18189702.818 18189006 18190550 - gene protein_coding_gene FALSE TRUE AT4G39040.1|AT4G39040.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21350.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE78777.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.423573066133 -4.41930655827556 0.00105690205360562 1 4.76943745113165 19.2185855103124 -0.423573066133 0.0844283373577147
AT1G60000_at 9.93496972485338 10.2150446077820 9.54970427360565 9.79632490722618 10.1128422483725 9.93424103411397 10.7922967195742 10.8985537486256 10.9275201761046 10.7384336613238 10.6375233358209 10.9326778879016 10.4168077678174 10.5869288929183 10.7214189274253 10.7845886805681 10.3063006263632 10.4560993251022 10.7674163392165 0.0930659631043699 0.0891461915456471 0.0910530009380746 0.0952769716413079 0.0907592140626706 0.0922172745712734 0.0895055741937845 0.089575116673624 0.0998489667222286 0.0905265103951 0.0886915064167506 0.0885943492775302 0.0893182182752727 0.092513956974436 0.0888332774151998 0.088352843469299 0.0964049431930892 0.0932333481246174 0.0907872719086603 1 1|0 -|/ 22097359 22097938 22097647.3 22097234 22098291 - gene protein_coding_gene FALSE TRUE AT1G60000.1|AT1G60000.2 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to Os02g0815200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048500.1); similar to chloroplast RNA binding protein [Phaseolus vulgaris] (GB:CAA57551.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)| -0.408884148052285 -4.41560109975373 0.00106336697228531 1 4.76418482982066 20.8624554443715 -0.408884148052285 0.0739193889786932
AT1G17020_at 1.18311771607433 1.25507237565130 2.46035675442820 2.44971783363631 1.07909880848759 1.2447947560456 0.738326296491097 1.13569582814256 0.219671635013259 0.726633097539544 0.601012505496925 0.612058302144051 0.548264760361165 0.54951204685007 0.224234311510876 0.994120693075319 0.834152336267428 0.76780948001998 0.703398541723838 0.222452906540501 0.22347587203677 0.233256240011579 0.230649917017414 0.222422648983899 0.222422648983899 0.222422648983899 0.222422648983899 0.222652386967071 0.222422648983899 0.229633713188432 0.222422648983899 0.224312521372383 0.225721949982862 0.224527167079812 0.223921593120044 0.23216500026077 0.223257171440693 0.227576261730479 1 1 + 5821150 5821685 5821433.727 5820199 5822006 + gene protein_coding_gene FALSE TRUE AT1G17020.1 SRG1 (SENESCENCE-RELATED GENE 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G17010.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G25300.1); similar to Os01g0351800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042986.1); similar to putative ethylene-forming enzyme [Oryza sativa] (GB:AAL79802.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.410966723549892 4.41492389705652 0.00106455296623049 1 4.76322462584304 2.03892086906526 0.410966723549892 0.0755613720107048
AT4G24210_at 6.23088024180355 6.5071894780714 6.65635645629124 6.75388867342624 7.34472768191662 7.0313238818845 6.53482425611109 6.73138685200142 5.74385575953642 6.25505300644194 6.37764603582566 6.29058843362883 6.58977016112775 6.68086003017179 6.10229242033608 6.31587656118655 6.17099971104966 6.45362704336656 5.94053379595863 0.192417005821478 0.199851745918584 0.190633844889763 0.191419489090735 0.188624965692428 0.209643204777074 0.183527738383779 0.184522238597595 0.196642368534716 0.189959972867271 0.190497286274673 0.187913643055008 0.183790924055060 0.191486066512816 0.183702412939242 0.183527738383779 0.194938534011810 0.196799128761172 0.185886083287805 4 4 + 12563669 12564055 12563892.545 12563563 12564492 + gene protein_coding_gene FALSE TRUE AT4G24210.1 SLY1 (SLEEPY1) F-box protein that is involved in GA signaling Identical to F-box protein GID2 (Protein SLEEPY1) (GID2) [Arabidopsis Thaliana] (GB:Q9STX3;GB:Q8LAQ7); similar to SLY2 (SLEEPY2) [Arabidopsis thaliana] (TAIR:AT5G48170.1); similar to F-box protein GID2 (Gibberellin-insensitive dwarf protein 2) (Protein GIBBERELLIN INSENSITIVE DWARF2) (GB:Q7XAK4); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.419198664328534 4.41432335434111 0.00106560586560432 1 4.76237305462062 12.9000830586377 0.419198664328534 0.0816697238874778
AT1G03060_at 6.90687580960788 6.75982456465929 6.53905346172139 6.36975716721141 6.59721555626673 6.59260890818698 6.04301145849858 6.13468459029389 5.90062448245653 5.48608115017305 6.38344706811022 6.88935628536395 6.41342761961621 6.29181123347161 6.52954696260327 6.1916168290242 5.70764601924776 6.2300255194547 5.54433730640287 0.220119989508927 0.214351624256979 0.215982908905702 0.225357049154108 0.211436726552599 0.216504974418973 0.212264535520804 0.215589430988988 0.225901052025371 0.213621814761514 0.210455100086166 0.220511495558895 0.211487881020392 0.210455100086166 0.212910257907330 0.211035853354125 0.221951957498875 0.229826170662752 0.215236860733584 1 1 - 712977 713487 713292.727 712473 726891 - gene protein_coding_gene FALSE TRUE AT1G03060.1 WD-40 repeat family protein / beige-related similar to WD-40 repeat family protein / beige-related [Arabidopsis thaliana] (TAIR:AT4G02660.1); similar to WD-40 repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98825.1); similar to putative beige protein [Oryza sativa (japonica cultivar-group)] (GB:AAP12994.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Beige/BEACH; (InterPro:IPR000409); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.374744190007864 4.41259044408975 0.00106865021377307 1 4.75991544995488 12.4795242754502 0.374744190007864 0.0419315729532278
AT3G60630_at 7.40200325129126 7.75985950363156 6.03429395275331 6.34163636855448 7.24946025154983 7.22535803920052 7.74499671046665 7.74581720994397 7.08635135118997 6.99939797008433 7.15604469051111 7.85802055695727 6.74342093040742 7.59246875428822 7.7404372625829 7.19608282214918 6.195135819994 6.9989063138861 7.13068639578918 0.199139863382519 0.201150183898792 0.210541625406966 0.201143740449217 0.19865250615926 0.201370112060173 0.215080347796131 0.197273051981502 0.225650753542456 0.201160873976122 0.196135920072782 0.202424991664038 0.202835121951228 0.197677413953649 0.205221030983228 0.195226791283897 0.216016496554617 0.205799829650981 0.198609280920905 3 3 - 22421512 22422045 22421785.545 22421340 22423583 - gene protein_coding_gene FALSE TRUE AT3G60630.1 scarecrow transcription factor family protein similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G45160.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85338.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.418781305496479 -4.4088953207538 0.00107517225834960 1 4.75467339275783 14.3165331023580 -0.418781305496479 0.081740085234552
AT3G63110_at 7.00128866178556 7.27912812047196 7.76542364932612 8.16588303350848 8.20953623985828 7.91865342937507 8.45311719984434 8.54078653737736 6.84215142495401 7.47035761847124 7.15357650971485 7.35671809789161 7.67555173845339 7.54907620986119 7.14800698180685 8.28406743643017 8.69358490074936 7.97141596782221 6.79210550975363 0.17350444188308 0.173713782840023 0.178557606383290 0.176522121615181 0.181920272497166 0.170572210053834 0.183159577288078 0.174076270075401 0.174427911629219 0.178263929510943 0.170738875579373 0.174621650365644 0.172098220950399 0.181452012173116 0.175676600649995 0.173028587889395 0.185115099900115 0.170350062735765 0.174213498817767 3 3 - 23329412 23329987 23329604.818 23329051 23330515 - gene protein_coding_gene FALSE TRUE AT3G63110.1 ATIPT3 (Arabidopsis thaliana isopentenyltransferase 3); transferase, transferring alkyl or aryl (other than methyl) groups Encodes cytokinin synthase. similar to ATIPT5 (Arabidopsis thaliana isopentenyltransferase 5), transferase, transferring alkyl or aryl (other than methyl) groups [Arabidopsis thaliana] (TAIR:AT5G19040.1); similar to isopentenyltransferase [Brassica rapa subsp. pekinensis] (GB:BAE43827.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) 0.445211085381044 4.40877016999303 0.00107539388434409 1 4.75449580927601 15.2986627329771 0.445211085381044 0.0993914276470362
AT3G61780_at 3.3440967875658 3.51135587502753 3.34949125288657 2.83863150366963 3.67591447780346 3.428630305729 4.4080882577414 3.93293750705509 3.28613682616636 3.59223430342567 2.78210621442695 2.67244981516983 2.8296809216758 2.59708405951341 3.16663694179247 3.21419714461005 3.2860054028931 3.18390493478696 3.59831137585762 0.191009079186914 0.190491967791951 0.193237530052548 0.186811849336613 0.184616515209291 0.188950559929738 0.19040286728978 0.19125280477683 0.190720299966996 0.184616515209291 0.187334958325281 0.185214272427908 0.188686553535561 0.184616515209291 0.184616515209291 0.184616515209291 0.192088836248945 0.188363351257536 0.184616515209291 3 3|0 -|/ 22878840 22879509 22879235.889 22878789 22882437 - gene protein_coding_gene FALSE TRUE AT3G61780.1 EMB1703 (EMBRYO DEFECTIVE 1703) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28320.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28400.1); similar to Viral A-type inclusion protein repeat [Entamoeba histolytica HM-1:IMSS] (GB:XP_653447.1); contains domain Interleukin 8-like chemokines (SSF54117); contains domain ClpS-like (SSF54736) -0.500836022141634 -4.40860220015685 0.0010756914127749 1 4.75425746333862 6.79051108652237 -0.500836022141634 0.131324545382661
AT2G28720_at 9.5895854267236 9.74916104126049 9.66066858215731 9.83106830733912 9.99914404940249 9.86410957151632 9.61618965566505 9.72046375384258 9.15469683380658 9.24155377522816 9.7868915606734 9.82960079732648 9.85151229056114 9.84522999451806 9.5809384962353 9.82010091100018 9.74773703847828 9.47547617665596 9.05137765921324 0.0931060578848503 0.0888108188390223 0.0941932475029695 0.0927623866800975 0.0902315607673016 0.0942335112760646 0.0923413896673658 0.0889873834214243 0.0948178481556007 0.0902424751022873 0.0914211254376394 0.0888108188390223 0.0923324153255803 0.0921366471430035 0.0896835916077964 0.0888108188390223 0.0935313956835736 0.0981893572734493 0.0904932351756445 2 2 + 12334143 12334537 12334367.636 12334055 12334755 + gene protein_coding_gene FALSE TRUE AT2G28720.1 histone H2B, putative Identical to Histone H2B.3 (HTB3) [Arabidopsis Thaliana] (GB:Q9SI96); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT5G59910.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) 0.381437071831326 4.40841232372062 0.00107602784880416 1 4.75398802677009 19.1994964639536 0.381437071831326 0.0500387914614503
AT4G02130_at 4.94625781309103 5.08255310874714 4.61014599332984 4.82706540306988 4.66911968331945 4.84069984211733 5.41539473791442 5.27629263545364 6.00910309893093 5.36998808661695 8.16671365926105 6.61960544567245 6.5082489109381 7.30181003617995 7.20877375079918 5.53874496195297 5.6322605679015 5.96746392777062 4.80487255663249 0.217531949190922 0.214544146369209 0.225425938752372 0.214889264963938 0.213440323605614 0.219755009809086 0.211813381175788 0.222235990230667 0.234660200297978 0.221557870062303 0.218656087384874 0.213560917488934 0.213542279001885 0.228770711973411 0.21941311669921 0.211813381175788 0.224855754009220 0.220470184735323 0.218971112751459 4 4 - 945774 946339 946002.182 944360 947085 - gene protein_coding_gene FALSE TRUE AT4G02130.1|AT4G02130.2|AT4G02130.3 GATL6/LGT10; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups|GATL6/LGT10; transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL5, transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G02720.2); similar to Glycosyl transferase family 8, putative [Medicago truncatula] (GB:ABE91008.1); similar to Os03g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049861.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.38996561674513 4.40821951048292 0.00107636960142168 1 4.75371441677955 10.9647447712735 0.38996561674513 0.0585374082014409
AT1G29820_at 4.93196520303793 5.37835966321475 5.09324815760379 5.62850977322357 6.09106088385615 5.67343745611793 5.51279854298314 4.83320791531878 4.27360945067347 4.1130327168081 4.78585675687773 5.42510608382858 4.75033713922907 5.01058200657823 4.55044444810032 5.03795668006961 5.01075361531918 4.70479707928962 4.07664074636411 0.233928790151997 0.243262183469278 0.238544206377465 0.233978646485873 0.234603019078499 0.239720003731713 0.238751477772258 0.250911239874514 0.255498245703752 0.238783280678255 0.234974695098637 0.233404561585029 0.234872542483812 0.23980296456491 0.235339371812732 0.233404561585029 0.244550913239557 0.257690360301242 0.240969369689207 1 1|0 +|/ 10439985 10440545 10440257.9 10437641 10440770 + gene protein_coding_gene FALSE TRUE AT1G29820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29830.1); similar to Os01g0664100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043790.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93751.1) 0.606266412387348 4.40776917557454 0.00107716824300949 1 4.7530753490159 9.92477688147456 0.606266412387348 0.183309394067700
AT3G28340_at 3.85768244365875 4.4643898919159 4.7428081006802 4.81260219475492 3.40478215505604 3.09727771275140 2.66372082709833 2.29383957295068 3.35978802985505 2.71066247508399 3.49795267567061 3.9557350913692 2.81639197720674 3.38393894990591 3.21854475517416 2.87056922321725 2.83009780912090 3.75803225370706 2.84672137072346 0.21196724865735 0.218099867135974 0.213075565530691 0.214708313847825 0.208439872072351 0.211181560524677 0.217691948406741 0.211467097374794 0.218889229709272 0.208439872072351 0.208443018571599 0.208439872072351 0.218512799881687 0.209673176169369 0.212401876518262 0.210446828049791 0.208439872072351 0.210940376088301 0.212478792939272 3 3 - 10590678 10591138 10590915.818 10590184 10591789 - gene protein_coding_gene FALSE TRUE AT3G28340.1 GATL10 (Galacturonosyltransferase-like 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL9/LGT8 (Galacturonosyltransferase-like 9), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G70090.1); similar to Avr9/Cf-9 rapidly elicited protein 231 [Nicotiana tabacum] (GB:AAG43554.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.506738286802685 4.40736855789153 0.00107787923660616 1 4.7525068066448 6.79903709592943 0.506738286802685 0.134531082576082
AT2G44860_at 8.23949123676596 8.17936882887015 7.92223617080407 7.95016731326008 7.80955065708477 7.57764874784908 7.9807679315806 7.88969412161412 6.7113706589441 7.02643330478062 6.36638744325407 6.85980178474274 6.58920954725064 5.93995256845142 6.7495180102066 6.51947530521147 6.66792105397869 6.26232189383205 7.231611583888 0.181040017053154 0.174250206024378 0.176174726709376 0.177971749636367 0.178109576462297 0.180757748251456 0.181387361247234 0.177702747001556 0.180821349864193 0.179847238427385 0.179423702735013 0.179736047834422 0.177906695313215 0.180923117815949 0.174250206024378 0.174250206024378 0.197317976244987 0.188387255324653 0.179798948102065 2 2|0 -|/ 18508159 18509158 18508655.5 18507878 18509633 - gene protein_coding_gene FALSE TRUE AT2G44860.1|AT2G44860.2 60S ribosomal protein L24, putative Identical to Probable ribosome biogenesis protein RLP24 [Arabidopsis Thaliana] (GB:O22165); similar to STV1 (SHORT VALVE1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G53020.1); similar to Os07g0292800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059399.1); similar to Os01g0514000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043187.1); similar to ribosome biogenesis protein RLP24, probable (IC) [Ostreococcus tauri] (GB:CAL52012.1); contains InterPro domain TRASH; (InterPro:IPR011017); contains InterPro domain Ribosomal protein L24E; (InterPro:IPR000988) -0.37645576956491 -4.40673137805492 0.00107901108170659 1 4.75160248928297 14.6856799426804 -0.37645576956491 0.0446158239491836
AT4G37890_at 2.18607515465789 2.12064853328222 1.90739951931450 2.02038627082233 1.77897740981944 1.74296798588387 2.31947989781824 2.37698384860027 3.21399826976032 2.93456119390835 2.80330533769112 3.12157417245253 2.50170995670233 2.82524491864648 2.62578846352493 2.66757081623385 2.89936622237774 3.16288899967444 3.3430362099238 0.186488263204886 0.190572644397333 0.190698751976080 0.195335538389265 0.19206980270893 0.192981884377795 0.187856936158400 0.192924615877302 0.192675244617861 0.188761857897933 0.191985487061101 0.187919501965513 0.194210914947939 0.191075301206952 0.187486503467887 0.189805569822796 0.189497949874977 0.187969556186513 0.199754190019822 4 4 - 17812824 17813362 17813112.091 17812730 17815089 - gene protein_coding_gene FALSE TRUE AT4G37890.1|AT4G37890.2 EDA40 (embryo sac development arrest 40); protein binding / ubiquitin-protein ligase/ zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G22680.1); similar to OSJNBa0068L06.4 [Oryza sativa (japonica cultivar-group)] (GB:CAE01578.2); similar to H0102C09.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67645.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G22680.1); similar to H0102C09.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67645.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.363149087873759 -4.40239159318809 0.00108675323465130 1 4.74544147455298 5.05151299524672 -0.363149087873759 0.0254631762990796
AT4G04830_at 9.19577664272315 9.77395992756723 9.55874957150164 9.76157990197434 9.87730509634975 9.399930420238 10.2471826974554 10.3247821057595 8.18773290504325 9.8430741660952 8.54275110451846 5.97069936532576 8.70179614337704 8.90498566802684 5.32524880209395 8.57822109531526 9.50312463220712 8.80824270252741 8.42933590895667 0.154362594237345 0.158729743508704 0.153508476019527 0.153508476019527 0.159296817385297 0.160225652404128 0.157541466354375 0.159258763760997 0.169093897897298 0.156266401190697 0.158966468086384 0.168675768106598 0.157386250686856 0.165255771302364 0.194941700077687 0.156017722947465 0.164291531590480 0.161621080890216 0.155377140896311 4 4 + 2445906 2446840 2446481 2445857 2447082 + gene protein_coding_gene FALSE TRUE AT4G04830.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04810.1); similar to Os03g0360700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050156.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72582.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) -0.507099033359056 -4.401337328404 0.00108864282053041 1 4.74394431070578 18.1983739700490 -0.507099033359056 0.135087351070974
AT3G02920_at 6.4255789397536 6.55544139370643 5.66134342044932 5.51713348380958 6.0563417674043 5.88739674244327 6.10490433610409 6.11884731075391 5.37319271406348 5.12309407780515 4.72827142892213 5.14099032234105 4.96406011709211 5.09060056082696 5.52171884882684 4.98211329655792 4.72011585721358 5.04036156317584 5.26822112019063 0.210513358633927 0.209930421609513 0.205630610527753 0.205980789367709 0.199605945963133 0.202463533619860 0.205569693261400 0.208479091658279 0.209484905652860 0.199170960847762 0.197349422665979 0.198565270580052 0.202079569358347 0.202545718245343 0.197349422665979 0.197349422665979 0.213484986947822 0.215631020807962 0.198377607492140 3 0|3 /|- 651857 652857 652342 651680 654357 - gene protein_coding_gene FALSE TRUE AT3G02920.1 replication protein-related similar to ATRPA2/ROR1/RPA2 (REPLICON PROTEIN A), protein binding [Arabidopsis thaliana] (TAIR:AT2G24490.1); similar to putative replication factor A [Capsicum chinense] (GB:CAJ13715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.375973056434879 -4.40131385771137 0.00108868492685109 1 4.74391097784331 11.1800559093310 -0.375973056434879 0.0445922584688314
AT1G63800_at 10.6874359974611 10.7186281629894 11.0777681629235 10.9421515133458 11.7953093347521 11.2378588280403 10.6727794538213 10.2441468543479 10.5413846614457 10.7149460093869 11.1142641170983 10.7594096976280 10.9881981367711 10.8470146272695 10.7304085475722 11.4009989580088 10.8524691035848 10.9794159966708 10.7497068301578 0.0851550125553805 0.0833120325625656 0.0834683748120026 0.0843459677176634 0.0838128419182405 0.0839975588182774 0.0835584813717535 0.0857110520236807 0.0938030813970583 0.0847891899241634 0.0833120325625656 0.0833120325625656 0.0833120325625656 0.0888679687705945 0.0834784503514483 0.0833120325625656 0.0878951881996501 0.0849799239932039 0.084159923232704 1 1|0 -|/ 23671553 23672428 23671952.8 23671279 23672743 - gene protein_coding_gene FALSE TRUE AT1G63800.1 UBC5 (ubiquitin-conjugating enzyme 37); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitin carrier protein 5) (UBC5) [Arabidopsis Thaliana] (GB:P42749;GB:Q8VXY5;GB:Q9CAE2;GB:Q9CAJ4); similar to UBC4 (UBIQUITIN CONJUGATING ENZYME 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G41340.1); similar to ubiquitin conjugating enzyme (GB:AAA32900.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.486433786844581 4.39981149353383 0.00109138371914509 1 4.74177714575241 21.7358605709963 0.486433786844581 0.124050358299363
AT1G51360_at 7.2643281734895 7.38857229864994 7.28829229017416 7.43678488587501 8.2180532209423 7.74135513433299 7.48884416151192 7.29091335668619 5.7863207671565 6.23816762139102 5.95593634472752 6.2439861129286 6.6575520465746 6.76998286040159 6.47685089338883 7.07778013178859 6.76197896139327 6.59385371888989 5.98908737655277 0.210157333106945 0.205534651413813 0.200716462814666 0.217277107140793 0.208170444042849 0.206987053259020 0.200142630862570 0.206090648374664 0.216883245846715 0.209947725529497 0.203688218754725 0.198412540650923 0.209254936015369 0.199231592573782 0.201468710117330 0.200611832240351 0.209330196807894 0.201311779654515 0.20791697320524 1 1 + 19047914 19048204 19048067.818 19047852 19048568 + gene protein_coding_gene FALSE TRUE AT1G51360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31670.1); similar to Hypothetical protein [Oryza sativa] (GB:AAK55783.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097); contains InterPro domain Dimeric alpha-beta barrel; (InterPro:IPR011008) 0.437835881987456 4.39779270308846 0.00109502125571757 1 4.73890924148262 13.8005256346053 0.437835881987456 0.0954007407548464
AT2G37580_at 4.46307472142671 5.01089841235414 4.66287845966875 4.84494864634172 3.71694263231081 4.63371686739332 2.81410497939574 3.80560213062164 2.72026699805108 2.46935245196933 3.49373031690210 3.74099186207247 3.93722737426085 4.84970709182905 3.27654618190139 3.87021641661097 3.47708473262161 3.03361891666023 2.67172552319118 0.226607934849349 0.224950603916740 0.224100383300017 0.230334938247924 0.222612224083824 0.231812459927543 0.219479422138813 0.220672048052027 0.232489389342601 0.232931721619658 0.216323119505907 0.223044388163954 0.218114662508588 0.217760822753277 0.216323119505907 0.219812324547717 0.231436714897520 0.224239738490865 0.224138993041947 2 2 + 15771937 15772462 15772254.909 15771806 15772631 + gene protein_coding_gene FALSE TRUE AT2G37580.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2J (ATL2J) [Arabidopsis Thaliana] (GB:O80927); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G10380.1); similar to Zinc finger, RING-type; Zinc finger, P11-type; RINGv [Medicago truncatula] (GB:ABE94571.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.765321813841283 4.39589060525723 0.00109846016694257 1 4.73620649932328 7.4091901991947 0.765321813841283 0.254149021268423
AT3G61010_at 5.4563733247854 5.46293441938554 5.64797904086357 5.44545459361384 6.00828349223471 5.16451958516307 4.54417930572028 4.5042068285067 5.27016233168687 4.94716970798155 5.79573116097797 5.68861063161529 5.98356003595279 5.87765554400923 5.29733470952334 6.53539002600727 5.45408775904135 5.24669310901558 5.49524367248353 0.215953027262181 0.213905368507579 0.22605587456323 0.224868144034464 0.215463884512388 0.235827757246569 0.217972721890414 0.215737870630556 0.225556586221388 0.217963467613297 0.21660292425784 0.21393508134071 0.220189756743163 0.222856221276342 0.220318901798484 0.218333831117292 0.223958566163955 0.216805449893802 0.238225944952084 3 3|0 -|/ 22583088 22585615 22584075.692 22582467 22586230 - gene protein_coding_gene FALSE TRUE AT3G61010.1 glycosyl hydrolase family protein 85 similar to glycosyl hydrolase family 85 protein [Arabidopsis thaliana] (TAIR:AT3G11040.1); similar to ferritin [Avicennia marina] (GB:AAZ04239.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Glycoside hydrolase, family 85; (InterPro:IPR005201); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) 0.535996671501593 4.39496303083479 0.00110014128873179 1 4.73488826847547 10.7654453784851 0.535996671501593 0.150328088149934
AT1G75280_at 10.3464361041915 10.4325897590151 10.3761320317348 10.5326972047661 10.0830093505663 10.1177435912096 11.6216902670969 11.7330716994936 10.6667605215507 11.1398953680617 10.8653088951339 10.6452078000669 10.7126050343444 10.9388356052480 10.4107916915888 10.9897089631409 11.2469379570266 10.6319463366195 10.5574623005990 0.105604246205266 0.102921080092529 0.116223955232504 0.103153032057395 0.102921080092529 0.113569999940953 0.102921080092529 0.108019902263600 0.111933250760427 0.104041871507988 0.104114974506344 0.102932147394231 0.104185429441125 0.104309987632175 0.103299378167243 0.104973780626975 0.107561815861456 0.111624094438762 0.107793019288181 1 1 + 28256283 28256924 28256548.091 28255621 28257280 + gene protein_coding_gene FALSE TRUE AT1G75280.1 isoflavone reductase, putative isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. Identical to Isoflavone reductase homolog P3 (EC 1.3.1.-) [Arabidopsis Thaliana] (GB:P52577;GB:Q9FRL9); similar to isoflavone reductase, putative [Arabidopsis thaliana] (TAIR:AT1G75290.1); similar to TPA: isoflavone reductase-like protein 4 [Vitis vinifera] (GB:CAI56333.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.369461512110545 -4.39476152378889 0.00110050685369419 1 4.73460187624113 21.4520248420759 -0.369461512110545 0.0369330426286285
AT1G80560_at 8.06253389370247 7.80761559677938 7.18667793459672 7.25820407733636 8.21846749936893 7.76298178115406 6.95262398642131 6.65511965294883 6.92867796359832 7.15120609720569 7.84084282792012 8.17711206932382 7.3462909500979 7.3823727516939 8.4521702186457 7.62941977086683 6.81810540572964 7.27630854671534 6.76333270790347 0.170477546627931 0.170001731526451 0.164409616993227 0.173379812646061 0.177572925348447 0.173174474148810 0.164336493023809 0.179886757072105 0.168740584685839 0.168475937087964 0.164186755913829 0.164446044715775 0.167362936086023 0.168729380452044 0.164304065544455 0.163806469581659 0.179072114203022 0.174875041012514 0.171004840459626 1 1|0 +|/ 30293946 30294994 30294449 30292655 30295190 + gene protein_coding_gene FALSE TRUE AT1G80560.1 3-isopropylmalate dehydrogenase, chloroplast, putative The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Identical to 3-isopropylmalate dehydrogenase 2, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase 2) (IMDH 2) (3-IPM-DH 2) (IMDH2) [Arabidopsis Thaliana] (GB:P93832;GB:Q8W4P6); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.1); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G31180.1); similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (GB:P29102); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804); contains InterPro domain 3-isopropylmalate dehydrogenase; (InterPro:IPR004429) 0.452349217686342 4.39437845571715 0.00110120214980261 1 4.73405742172529 14.7695614230518 0.452349217686342 0.104705278888842
AT1G28260_at 7.83917223529002 8.30460356005186 8.25187294570517 8.72086691818506 9.21925124721463 8.71295069039803 7.32614244198443 7.37534515050398 7.52212136326725 7.27809020505218 7.23784805705662 7.05610308744752 7.59821981793216 7.37345855597178 5.9487061234218 7.28287131697962 7.40457485730637 7.48140068652312 6.61912985789662 0.226970186308061 0.226402876628735 0.2536741094034 0.225240817126092 0.225059571577444 0.235557361091110 0.238720948841815 0.226582725338407 0.252582679000345 0.229325418217456 0.245791124374099 0.226385713864364 0.225059571577444 0.229949912369938 0.244873481905030 0.230577822423564 0.243748443795521 0.231696276230384 0.236695301654613 1 1 - 9875767 9876336 9876060.091 9875587 9879254 - gene protein_coding_gene FALSE TRUE AT1G28260.1|AT1G28260.2 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19400.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32367.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.524018470421337 4.39418487384081 0.00110155369006247 1 4.73378227471948 15.3751147927843 0.524018470421337 0.144305471023789
AT4G34390_at 7.21478794324744 7.3591470376791 8.00250368186779 7.7335773342498 7.09521474505493 6.97581462756941 5.75576597254044 6.00496127593851 6.55275643296352 6.27299209980581 6.54090340314368 6.32068931451885 6.18740685877652 6.36742463977972 5.99167359323534 6.11348597731396 6.4028899771478 6.08136069438963 6.11036171326166 0.187101991953164 0.191764953105135 0.189736912674153 0.185415721590959 0.194076677954175 0.185709507427240 0.194246006803761 0.191160938270236 0.197346728429299 0.199341623532993 0.195207250905282 0.19041724625154 0.199488728024410 0.200274600721471 0.183861445950956 0.191690293784942 0.192371590109226 0.190897691666364 0.196788270766468 4 0|4 /|+ 16444317 16444816 16444558.1 16441183 16445009 + gene protein_coding_gene FALSE TRUE AT4G34390.1 XLG2 (extra-large GTP-binding protein 2); signal transducer similar to XLG1 (EXTRA-LARGE G-PROTEIN 1), signal transducer [Arabidopsis thaliana] (TAIR:AT2G23460.1); similar to extra-large guanine nucleotide binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99166.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) 0.40340229922265 4.39303842456623 0.00110363802975666 1 4.73215264661385 13.2991046052510 0.40340229922265 0.0712505406158983
AT1G31350_at 5.29363790290659 6.2602993910936 6.15682655126619 6.65849354197688 6.92820170105942 6.95335859205962 5.6250809706859 6.28251790285899 5.676143497972 5.47650617550567 6.40110635433084 5.99435935581685 6.55757110075758 6.04307438519987 5.80870862836593 6.9284139551282 6.41905859141434 5.76222992073255 5.8754518473584 0.236657258823315 0.229834560720527 0.231387113691170 0.238437919171733 0.235107908299903 0.239130008227807 0.236684167908110 0.238199755778415 0.234460919002149 0.249109051550131 0.226269470835166 0.236983188387706 0.235920274912982 0.232049486297030 0.232750827454169 0.229923649181139 0.244664421225252 0.231826521616384 0.229920905503653 1 1 - 11221541 11222059 11221773.818 11221316 11222767 - gene protein_coding_gene FALSE TRUE AT1G31350.1 F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55270.1); similar to F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53653.1); similar to Os06g0711700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058552.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.686058750446922 4.39299279375856 0.00110372107588812 1 4.73208777993349 12.2274766326119 0.686058750446922 0.220191941006404
AT1G17470_at 8.67880647911964 8.83573975799291 8.0235742579419 8.05372248404837 8.62439637765457 8.2671606368143 8.71685169018253 8.64217604098962 8.4315031089205 8.15061787781654 7.9324737422359 7.88424539513885 7.96116433128927 7.85135387918525 8.1277948854411 7.75817901770393 7.99386842462499 7.9010427644969 8.17095334846804 0.151936731269088 0.161877922905871 0.15355147998786 0.159494068138089 0.152738915346944 0.164762646873446 0.153021542404477 0.165978540207045 0.158251522787984 0.154900159932589 0.148729482717639 0.149164477628278 0.150956046489805 0.158339311505603 0.157619393731575 0.150394865930629 0.151853338196915 0.157615097208398 0.155727186872931 1 0|1 /|+ 6005380 6006091 6005789.556 6002905 6006398 + gene protein_coding_gene FALSE TRUE AT1G17470.1|AT1G17470.2 ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding|ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues. similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G72660.3); similar to developmentally regulated GTP binding protein [Pisum sativum] (GB:AAB67829.1); similar to Os05g0357600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055297.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain TGS-like; (InterPro:IPR012676); contains InterPro domain GTP1/OBG domain; (InterPro:IPR006074) -0.400469763171783 -4.39213460174648 0.00110528417022219 1 4.73086774963824 16.5689485073011 -0.400469763171783 0.0689467669375988
AT1G50730_at 7.49170341742385 7.6133130249435 6.70987059411164 6.86223540969498 7.53857027258869 6.98961667280594 7.7196119037502 7.87695855758369 8.2580927467018 8.03736441917149 7.93026798024439 8.24974889282069 7.59343703273323 8.12339765824862 7.79419316322091 8.11704629868435 7.40491497878595 7.99372328245575 8.16531090886935 0.208608353152262 0.196986725975724 0.217069529021276 0.222012686515084 0.202611160769219 0.223295377601677 0.196986725975724 0.198474260097921 0.203516359461266 0.196986725975724 0.197978146405506 0.197724325252717 0.208803166951331 0.206831407868356 0.206364559214362 0.197762714488084 0.202279609617365 0.196986725975724 0.196986725975724 1 1|0 +|/ 18805320 18806876 18806261.333 18798943 18806931 + gene protein_coding_gene FALSE TRUE AT1G50730.1 similar to hypothetical protein DDBDRAFT_0217150 [Dictyostelium discoideum AX4] (GB:XP_644589.1); contains domain ESOPHAGEAL CANCER ASSOCIATED PROTEIN (PTHR13673) -0.451535842986653 -4.39095779703636 0.00110743135505421 1 4.72919457418425 15.3774502411862 -0.451535842986653 0.104424109147286
AT3G01830_at 3.3064800843657 3.97114848898897 5.10360080705366 5.54463299490054 2.81941769746404 2.51136635052653 0.805189332559067 1.04203403716324 2.43489237652120 1.72861013385450 0.975690465521162 1.28605445096846 0.959770014649915 1.29634781541449 1.27968706135902 1.26391174347458 1.15697421681185 1.55109799377766 1.39040917438152 0.308732483209574 0.320328019066896 0.316775101605229 0.327643272752161 0.291970882681702 0.291845145837706 0.293036068744189 0.294153860011439 0.291845145837706 0.291845145837706 0.294053578337986 0.293163071579565 0.295356193720551 0.297798353114574 0.292868045082951 0.291845145837706 0.291845145837706 0.291845145837706 0.291845145837706 3 3 + 296153 296535 296315.545 296061 299270 + gene protein_coding_gene FALSE TRUE AT3G01830.1|AT3G01830.2 calmodulin-related protein, putative similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G76650.1); similar to calmodulin-like protein [Datura metel] (GB:AAM95458.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT5G42380.1); similar to calmodulin-like protein [Datura metel] (GB:AAM95458.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.541714651022508 4.38906543796529 0.00111089331045405 1 4.72650355110209 4.67423153171083 0.541714651022508 0.153549768335081
AT1G64470_at 3.76290929719692 3.12577202532064 3.68785292986781 3.46546566722395 3.80192448596633 3.55346470178259 3.42348170126585 2.88082718106036 1.83881535992983 1.82338401307937 2.60529010320211 2.74572859696989 2.85170646054955 2.85640094652519 2.46639472036883 2.76394021554407 2.90960099752881 2.65386406051568 2.24224147943555 0.218728931710969 0.212743134735257 0.223092660409366 0.217860096894944 0.220970545001061 0.228924534334041 0.214819075599858 0.21199613439676 0.222364103871167 0.220291276226422 0.21691726406249 0.209559602202502 0.209597085067974 0.212681489983718 0.214033307203754 0.211285983867359 0.223179189718159 0.211921913789573 0.22279071895889 1 1 - 23948462 23948994 23948797.091 23948385 23949435 - gene protein_coding_gene FALSE TRUE AT1G64470.1 ubiquitin family protein similar to phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT2G46500.2); similar to Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago truncatula] (GB:ABE80823.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.546199103417414 4.38701156955844 0.00111466358456171 1 4.72358219053955 5.81259360544327 0.546199103417414 0.155903542480391
AT3G11770_at 5.6323265705355 6.62030236606079 5.97066761939233 6.57685167667221 6.91464907324599 7.05588505194378 5.91206023872067 5.79236764315178 5.1413516552928 5.74046706351798 6.1837048887381 6.57844978695495 6.65553958121552 6.16769602360804 5.97436187266004 6.35566526847036 6.81270167902264 6.52145024054717 6.37746989495032 0.206568756686398 0.189317317412205 0.191095768229022 0.195984290403941 0.203651244238716 0.187701021028816 0.192022015662888 0.196810037846022 0.202517945249169 0.191184557545109 0.193601664793332 0.189178161142491 0.189712134825842 0.20365228300876 0.186626158228003 0.189984629962979 0.201367513129961 0.190060546711085 0.188284067860687 3 3 - 3721542 3722000 3721764.364 3721332 3722664 - gene protein_coding_gene FALSE TRUE AT3G11770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06450.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.646674556880731 4.38639853830838 0.00111579152093761 1 4.72271009953723 12.3890349660849 0.646674556880731 0.203133242358439
AT1G10210_at 4.90641616876133 5.20925500824148 4.92854283991816 4.45515199959587 5.21006513147581 5.62665731689952 3.03308281261515 3.53776428244176 3.68524112443289 3.18710658273732 3.62061028141962 2.84141176241746 4.23622283407947 3.84443560527389 3.21484876833979 3.70766052727983 4.01968402711222 3.54118179100624 3.46617111608029 0.260132811001977 0.259098198877935 0.256105696100062 0.255180914943603 0.255163698870615 0.266007298589464 0.259984920170608 0.251945347103316 0.252391291513447 0.250430441173613 0.247498309975659 0.251648223067016 0.250609753918052 0.250838938571935 0.254023581809371 0.252090125261654 0.255874373091284 0.247498309975659 0.270216094581504 1 1 + 3350196 3350741 3350522.818 3349221 3351182 + gene protein_coding_gene FALSE TRUE AT1G10210.1|AT1G10210.2 ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1); MAP kinase/ kinase Encodes ATMPK1. Identical to Mitogen-activated protein kinase 1 (EC 2.7.11.24) (MAP kinase 1) (AtMPK1) (MPK1) [Arabidopsis Thaliana] (GB:Q39021;GB:Q9SY63); similar to ATMPK7 (MAP KINASE 7), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G18170.1); similar to ATMPK2 (MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G59580.2); similar to double HA-tagged mitogen activated protein kinase 1 [synthetic construct] (GB:ABG54328.1); similar to Mitogen-activated protein kinase homolog NTF3 (P43) (GB:Q40517); similar to double HA-tagged mitogen activated protein kinase 2 [synthetic construct] (GB:ABG54329.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.53277938124499 4.38571033490808 0.00111705919523134 1 4.7217309962467 8.15058189034342 0.53277938124499 0.149275340546835
AT4G23740_at 6.79509836007111 6.56337487122057 6.32653570208473 6.2546543237252 6.77834444641376 6.6656448048745 7.88693728112638 7.5769979195991 7.72915612666465 7.77048861075855 7.79999912915824 7.89352887123295 7.50437369945097 7.88400896492985 7.73951785119439 7.7208231113265 6.99206579584336 7.6341546720324 7.75361708901313 0.201194467700904 0.19305013993021 0.209871607014045 0.199508828574473 0.191884587229249 0.193667902112935 0.19241553536665 0.194434636310235 0.204260712863334 0.203503572472594 0.19101990413303 0.188303094032027 0.199657255385548 0.190336477069952 0.193867851171475 0.191818803939536 0.199763040845139 0.194641022834133 0.198479687016677 4 4|0 +|/ 12368599 12369137 12368846.9 12366396 12369348 + gene protein_coding_gene FALSE TRUE AT4G23740.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G64210.1); similar to putative receptor-like kinase [Oryza sativa (japonica cultivar-group)] (GB:BAA94519.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.40216777615622 -4.38500595009446 0.00111835823986718 1 4.72072879149481 14.5545216073268 -0.40216777615622 0.0708523761651977
AT4G16190_at 13.0816723318801 13.2160694462227 13.4635931286342 13.4702587007580 13.4169629134343 13.4739160866677 12.8366729302799 12.8888493881394 11.7899685354757 12.3478159612804 12.1752951967619 11.7379219533849 12.7013022848779 12.5305871661669 11.9078833357996 12.3440538707891 13.0714891925030 12.5326741708285 12.1642429445625 0.0751864354697632 0.0757249586168816 0.0734757606391111 0.0780609999919639 0.0803050016706945 0.081007475794486 0.0754034626450765 0.0777664359908764 0.0934552600446288 0.0738051529654605 0.0790846593885709 0.0753636358647845 0.0734757606391111 0.0742450103157256 0.0825044021572307 0.0734757606391111 0.0770019705218136 0.0806681571589601 0.0734757606391111 4 4|0 +|/ 9172167 9172857 9172456.1 9171482 9173120 + gene protein_coding_gene FALSE TRUE AT4G16190.1 cysteine proteinase, putative similar to RD19 (RESPONSIVE TO DEHYDRATION 19), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G39090.1); similar to papain-like cysteine proteinase isoform I [Ipomoea batatas] (GB:AAF61440.1); similar to papain-like cysteine proteinase isoform I [Ipomoea batatas] (GB:AAF40414.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.362420882929549 4.38497689987083 0.00111841184904110 1 4.72068745684465 25.4689127208329 0.362420882929549 0.0268502890392252
AT3G17090_at 8.25305414609485 8.41037617009796 8.50238634484696 8.48940189772868 8.8519534911702 8.7260830886103 8.69456794596404 8.46163374770972 8.13262470699567 7.91586646376037 8.76186610168711 9.01100964566051 8.33832570059844 8.50685320626618 8.84510583302839 8.26202920939132 8.31968806978015 8.16455048558204 7.79754377117974 0.199012510673458 0.182073492303393 0.186609469399219 0.196778699786872 0.187287336480954 0.189936013844155 0.182073492303393 0.195907759184627 0.212947171242608 0.187174721583173 0.185134685473604 0.186993822340717 0.191343898033984 0.184094314208438 0.185326588237263 0.185044499438574 0.194784756703764 0.195029085845365 0.196513008477440 3 3|0 +|/ 5828097 5829300 5828757.7 5826809 5829639 + gene protein_coding_gene FALSE TRUE AT3G17090.1|AT3G17090.2 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G38520.2); similar to Os03g0832400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051801.1); similar to putative protein phosphatase 2C [Sorghum bicolor] (GB:ABE77197.1); similar to Os03g0137200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048899.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G38520.2); similar to protein phosphatase 2C family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99721.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.382524210321537 4.38433960636035 0.00111958858635408 1 4.71978063720455 16.7861105267668 0.382524210321537 0.0533447882806174
AT1G34430_at 7.92550656569809 7.50936266102125 6.26948452203714 5.87190118762029 7.32304935425217 6.64046719553734 8.53979594371285 8.06718812351551 7.41906093198891 7.78023470530416 8.30022755466308 8.44645381976032 7.73939291617922 7.9775246926588 8.39857215535557 7.47129804293777 7.07310748780064 8.05118052718486 7.65415472908688 0.194681418030701 0.202413735464571 0.200115077720437 0.211214251449853 0.206449762893224 0.211824323118561 0.201230175086257 0.219150460483296 0.210134761702821 0.20723966055043 0.198968048002933 0.197359909523371 0.208526592325378 0.199276656192243 0.205851924029139 0.201021763055305 0.205000948056418 0.193939127128120 0.203470922484463 1 1|0 -|/ 12588052 12588904 12588429.778 12587730 12590170 - gene protein_coding_gene FALSE TRUE AT1G34430.1 EMB3003 (EMBRYO DEFECTIVE 3003); dihydrolipoyllysine-residue acetyltransferase similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE), dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G25860.1); similar to Os12g0182200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066319.1); similar to dihydrolipoamide S-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95959.2); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) -0.584917448925485 -4.38399654592966 0.00112022257138891 1 4.71929246109613 15.0433626633548 -0.584917448925485 0.174821600597353
AT2G42350_at 3.45114577156867 3.55669059577899 3.40372550886821 3.83628772419854 3.35993949052433 3.10335503918303 2.02511580394969 2.26682470914237 2.11585618911326 1.61508508564726 2.00261307770535 2.05250573420995 1.77445703241431 2.30972396311716 2.53335741923948 2.36279671850320 2.09341118909471 2.34780459035369 1.98077532632439 0.258515626260112 0.247030782905711 0.257468745804701 0.255273431437399 0.254996437477898 0.268902912571848 0.246087831838227 0.255181628839939 0.250664349162128 0.248722713398163 0.247923181861051 0.254943385570727 0.248641316698938 0.267189125261846 0.247050888311984 0.253275539207715 0.250057362491016 0.251834793308128 0.248094247310254 2 2 + 17646377 17646916 17646619.091 17646230 17647076 + gene protein_coding_gene FALSE TRUE AT2G42350.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2K (ATL2K) [Arabidopsis Thaliana] (GB:Q9SLC4); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G42360.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE79478.1); similar to Os01g0755700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044285.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.440780451234179 4.38232277587339 0.00112332114756917 1 4.71691040484063 5.16963020503908 0.440780451234179 0.0982774610297629
AT3G15530_at 8.44957831478836 8.69761565427151 8.05917468726358 7.99325036068363 9.15047837199541 8.94193402556721 7.41625761238337 7.72632376570487 8.12719496945497 7.84406971112453 8.23127776867807 8.47174880288736 8.3813253738368 8.57571231357467 8.22835464117592 8.47039942782705 8.216294755518 8.39731255196902 8.06452459931368 0.166318069337095 0.152842442735212 0.160493617142570 0.164051041150968 0.159838991014534 0.166908404400337 0.169392182302898 0.159467767472327 0.168345553545714 0.16193889235919 0.164214877104133 0.159921586984728 0.152417196788422 0.168741720940561 0.163005385565134 0.155999439785885 0.166117306047697 0.161228452027940 0.159318811245803 3 3 - 5253295 5253909 5253603.545 5252882 5254569 - gene protein_coding_gene FALSE TRUE AT3G15530.1|AT3G15530.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54400.1); similar to conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl] (GB:ZP_00766604.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.411694484529699 4.38159516461755 0.00112467094340542 1 4.71587474883054 16.4960680812811 0.411694484529699 0.0784493845324233
AT1G06210_at 6.88967142536923 6.79684833381171 7.1542349987709 6.96585697998004 7.49141897746138 7.28236258059533 7.23135468897504 7.02267876895193 5.62977193781185 6.24111594670198 6.37371674086635 6.6152396676601 6.54618166024108 6.78006682485974 6.78988333552014 6.61609875727634 6.56664026355361 6.24011402788738 6.18972676955984 0.213425316989504 0.214927698207787 0.219379930253804 0.218024047016385 0.221972986698463 0.226737804174541 0.227191125098836 0.229416199697120 0.234745346403226 0.225190470699477 0.217023724836062 0.217952763019931 0.223319048737114 0.232809698607848 0.214324415554229 0.213013223161668 0.221202349222481 0.222901744264674 0.220377042798369 1 1 + 1898293 1898949 1898625.5 1897202 1899207 + gene protein_coding_gene FALSE TRUE AT1G06210.1|AT1G06210.2 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16880.2); similar to hepatocyte growth factor-regulated tyrosine kinase substrate-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58181.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942)|similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16880.2); similar to hepatocyte growth factor-regulated tyrosine kinase substrate-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58181.1); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.392058927483403 4.38002117558041 0.00112759668168733 1 4.71363409271082 13.3974021164516 0.392058927483403 0.0627195132825316
AT2G32400_at 4.11304922026931 5.31098157973451 3.96927399930991 3.65520970164580 4.44573738207034 3.94924635510212 4.81897698680932 4.84045082863595 3.87087663627683 4.79687895006164 4.03917818786729 4.0011280891438 3.54995944491058 3.62941052328768 3.7448727695008 3.65873380083174 4.49347766178439 3.20380595085584 4.65574519753138 0.257377079382797 0.252592512270523 0.248837151511222 0.258173957586609 0.251163806823721 0.268419446715061 0.249865364790395 0.253841578046102 0.251482608821474 0.249357211014822 0.254073839330208 0.248837151511222 0.248837151511222 0.250233972930962 0.255621614832931 0.252365263893919 0.248837151511222 0.254860286220369 0.251033757644675 2 2 - 13759920 13760374 13760095 13759742 13763930 - gene protein_coding_gene FALSE TRUE AT2G32400.1 GLR5 (Glutamate receptor 5) Glr5 Identical to Glutamate receptor 3.7 precursor (Ligand-gated ion channel 3.7) (Ionotropic glutamate receptor GLR5) (GLR3.7) [Arabidopsis Thaliana] (GB:Q9SDQ4;GB:Q9ZV68); similar to ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) [Arabidopsis thaliana] (TAIR:AT1G05200.2); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) (GB:Q7XP59); similar to Ionotropic glutamate receptor; Extracellular ligand-binding receptor [Medicago truncatula] (GB:ABE83251.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Metabotropic gamma-aminobutyric acid receptor, type B; (InterPro:IPR002455); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.70854695938204 -4.37997537868122 0.00112768192856689 1 4.71356889235697 8.50348462243685 -0.70854695938204 0.230925403080974
AT3G13070_at 8.10501664838835 8.11450966932858 7.67596341619888 7.52260215774116 7.5388626321255 7.53116755812721 7.7367220262321 7.65969640254243 8.36634847524968 8.65428670850317 8.46065860689813 8.49705785035086 7.64589871854306 8.28852130578807 8.05030349956355 8.43078323461705 7.70211360060234 7.90406037779017 8.51721228964539 0.153228668298414 0.153663282730814 0.157783106436952 0.153890627952555 0.160538596389221 0.159962702977783 0.155178761397114 0.152188599937105 0.163761621226596 0.151143798476782 0.150801557579557 0.15040503057787 0.151651421617880 0.155042271692992 0.147955328801320 0.155647316194800 0.160476497978642 0.161419926773134 0.148696223479234 3 3|0 -|/ 4191535 4192170 4191745.5 4191358 4195119 - gene protein_coding_gene FALSE TRUE AT3G13070.1 CBS domain-containing protein / transporter associated domain-containing protein similar to CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55930.1); similar to Os03g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050588.1); similar to transporter associated domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT81753.1); similar to CBS domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97418.1); contains InterPro domain Transporter-associated region; (InterPro:IPR005170); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.363514210385802 -4.37874022486038 0.00112998360889933 1 4.71181029327579 16.0530878007031 -0.363514210385802 0.0297744328055974
AT2G03750_at 8.73795511380672 9.3291144771796 8.22701621084828 8.40773991792818 9.00609607678703 8.85433059224608 9.6703354633343 10.0759612533218 9.81779316126404 10.0035843282701 9.8280152853171 10.0439888422979 9.70117801561642 9.85377137239865 9.58249575021015 10.0086292406149 9.52248636960596 9.714772117235 10.0121006692122 0.163765003245705 0.150743471081433 0.170131684723813 0.172372005173441 0.154159806542400 0.155421421750692 0.159406306104347 0.157899494557387 0.155929660052804 0.151561642257136 0.154626867825108 0.154268072096360 0.154025986387570 0.156421365185092 0.155774867039906 0.148256367643264 0.159615191467862 0.148256367643264 0.148256367643264 2 2 - 1147968 1148535 1148295.273 1147804 1149058 - gene protein_coding_gene FALSE TRUE AT2G03750.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT3G45070.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) -0.496060736439169 -4.37811470169282 0.00113115113523264 1 4.71091958488204 18.9017735600536 -0.496060736439169 0.130618502555298
AT2G41380_at 3.51383552474323 3.94901712390364 4.99609925250034 5.21858282786009 3.3792380408901 3.47799647911396 3.77005674990358 3.709816345313 2.30900655812980 2.24257473473368 2.77049665505109 1.45326765550952 2.73492745204281 2.38741600647214 1.67616071190555 3.02792895063211 3.40843356524801 3.18629640585156 2.24806417933538 0.259342895699765 0.261781684335146 0.260485577232147 0.256434198165413 0.256341883264612 0.267917706290756 0.251016179978251 0.25303022590755 0.276619291584012 0.255322038039511 0.257273630645511 0.262940218308263 0.256310351238101 0.257973027213530 0.264550152651253 0.251016179978251 0.254531202088918 0.254656935898921 0.253392762450637 2 2 + 17259379 17259799 17259576.2 17259019 17260135 + gene protein_coding_gene FALSE TRUE AT2G41380.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT5G10830.1); similar to embryo-abundant protein EMB [Pisum sativum] (GB:AAM19356.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.423182574365702 4.3780185085354 0.00113133078999446 1 4.71078260578484 6.42541250106452 0.423182574365702 0.0869182620355956
AT4G21620_at 9.74798853711984 9.85278835093122 9.8114996577271 9.52040579662452 11.1594547769683 10.6780861981569 10.4617351252186 10.3284487615498 10.7165444984463 10.6348507861851 11.6154230069021 11.0702486812371 11.0925388031802 11.6184325486861 11.0914267184668 10.3632002314060 10.7892393778124 11.5000372126098 9.98617568407894 0.0847301609962382 0.0917924047599023 0.0904396616522206 0.0961992529322885 0.0851623466724399 0.0891513635034983 0.0866082368484297 0.093147630560638 0.0915886047744178 0.08907256046653 0.0846382946956807 0.0846382946956807 0.0854935087171269 0.0856351006221951 0.0868287169390075 0.0846382946956807 0.0904156905783361 0.0865649043936389 0.0851043230086654 4 4 + 11491538 11491852 11491728.727 11491495 11492179 + gene protein_coding_gene FALSE TRUE AT4G21620.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61255.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99958.1); similar to Os03g0676300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050889.1); contains InterPro domain Somatomedin B; (InterPro:IPR001212) 0.445666373315897 4.37718648570212 0.00113288596316632 1 4.70959774186101 20.9892635565909 0.445666373315897 0.101675999452943
AT4G35120_at 2.29529679539539 1.99061492107846 2.30240572449025 2.40541842853701 1.79854559352702 1.74118478261466 2.56763295212361 2.31066043427642 2.98432243679055 2.38588105652591 2.26705473351984 1.93260890128346 2.54674351978907 2.31983580063193 2.12179640136394 2.14374322193918 1.94425413874292 2.5533379342382 3.04400253584531 0.213796428106528 0.217833768305270 0.228137463384903 0.220047503877528 0.215383202549611 0.220680378637709 0.222220608094054 0.219280789520358 0.221930100057628 0.220471228245484 0.223937829316776 0.221724718971481 0.213796428106528 0.231071670029676 0.219465505173696 0.213796428106528 0.214804871461254 0.220412643838379 0.22708998040091 4 4 + 16717432 16717998 16717732.818 16716811 16718022 + gene protein_coding_gene FALSE TRUE AT4G35120.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19870.2); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.402613077520796 -4.37516516615041 0.00113667345167636 1 4.70671875800331 4.6931735412516 -0.402613077520796 0.0719307698819284
AT1G78440_at 2.20926667947976 2.35750729214619 2.08782352114195 2.09193810049860 1.70193499707894 1.76880808104282 5.6556903545577 5.04018798284765 1.47200869027896 2.41794644890519 2.52704319535077 3.77732810983103 3.49851198065059 2.97431228648923 2.12270502393259 3.39329521250879 3.28320990411752 3.29924899541108 2.48307553153172 0.240678266280904 0.239737524110827 0.236591832235269 0.236507567584719 0.236507567584719 0.244206788900956 0.244818926790691 0.247247229589690 0.241132315231821 0.239998271607179 0.236507567584719 0.236861737107568 0.239253659352524 0.245432184903545 0.252666318904116 0.239252679588040 0.237293370399111 0.237673481048185 0.236959048547458 1 1|0 -|/ 29516727 29517264 29517021.8 29516492 29517944 - gene protein_coding_gene FALSE TRUE AT1G78440.1 ATGA2OX1 (GIBBERELLIN 2-OXIDASE 1); gibberellin 2-beta-dioxygenase Encodes a gibberellin 2-oxidase. Identical to Gibberellin 2-beta-dioxygenase 1 (EC 1.14.11.13) (Gibberellin 2-beta- hydroxylase 1) (Gibberellin 2-oxidase 1) (GA 2-oxidase 1) (GA2OX1) [Arabidopsis Thaliana] (GB:Q8LEA2;GB:Q9XFR8); similar to ATGA2OX2, gibberellin 2-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G30040.1); similar to (GB:CAC83090.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.458961810343042 -4.37043581662114 0.00114558712929418 1 4.69998009813137 5.48104482382007 -0.458961810343042 0.110173099614232
AT1G28760_at 2.49118627831665 2.67212875627389 3.29889238650334 3.1859353034897 2.90179202262045 3.16966285677643 2.84862298932382 2.97726836872608 2.60595376639776 2.77589915463009 2.94859269938157 2.79669536703121 3.47189145382451 3.12585558445713 3.3850989128645 3.21294259481119 3.55693985669739 3.49264013382503 3.18938923634753 0.185660087891690 0.182223543999081 0.191617695322174 0.184054365635106 0.193805069245348 0.194195912419903 0.177971072413916 0.177971072413916 0.205888661643473 0.180023398091432 0.177971072413916 0.180653180427791 0.190817834335458 0.179596355244274 0.180247096284027 0.186671474733870 0.199622058152328 0.193816292189286 0.188058588547074 1 1 + 10103999 10104549 10104249.455 10103144 10104574 + gene protein_coding_gene FALSE TRUE AT1G28760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G67610.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97955.1); similar to Os03g0654500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050797.1) 0.391760200211906 4.36933167943467 0.00114767869292854 1 4.69840633244449 5.99614251749714 0.391760200211906 0.0633020383385317
AT3G01180_at 8.06659576674113 8.08684271794564 7.99352874861714 7.94522396283703 8.04739476090965 7.73423643184065 8.81636726971943 8.82142358473843 8.25448381755152 8.44458760787493 7.83080257497622 8.02093881618779 8.09513054390179 8.2481972322983 7.76972374212032 8.55455942941462 8.0331329236241 7.85692154293558 8.19808074702429 0.120476754048088 0.116944882139408 0.115844118219606 0.115165954539040 0.115165954539040 0.123863132649832 0.119355330125604 0.120407591790981 0.122170595056881 0.115165954539040 0.122852722105807 0.118275110995349 0.115165954539040 0.119730885377097 0.135072593168318 0.115165954539040 0.132444993206060 0.127584639299088 0.117923010164438 3 3 - 62629 63035 62838.455 62252 65852 - gene protein_coding_gene FALSE TRUE AT3G01180.1 glycogen synthase, putative similar to SSI (STARCH SYNTHASE I), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G24300.1); similar to starch synthase II [Amaranthus cruentus] (GB:ABA64552.1); similar to granule bound starch synthase II precursor [Manihot esculenta] (GB:AAF13168.1); similar to Granule-bound starch synthase 2, chloroplast precursor (Granule-bound starch synthase II) (SS II) (GBSS-II) (GB:Q43847); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.382793116101473 -4.3690836288422 0.00114814912487458 1 4.69805274985734 16.3640649428349 -0.382793116101473 0.0549532344413117
AT3G07340_at 4.23941905237324 4.68964586074373 4.51954217426709 4.66755538356031 5.42867583718998 5.39317580914056 6.39216391108439 6.41168991152777 6.94364603641147 6.10876090037283 6.90146178432849 5.59147533310731 6.57878401781942 6.79147283182519 4.97254621729459 5.74981831543129 5.64083402603463 5.89984449180168 6.19663014583745 0.257998298620052 0.238929588976336 0.251264029717152 0.244293216372723 0.240369995046759 0.244233325984527 0.261744902326957 0.239631845755546 0.270258238799172 0.242098355349915 0.249334071643483 0.241998835680948 0.240293922815323 0.238988426907771 0.250054458302774 0.238902182428991 0.243482421128301 0.249537879121279 0.241470831275740 3 3|0 -|/ 2341209 2342213 2341672.5 2340905 2343476 - gene protein_coding_gene FALSE TRUE AT3G07340.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G48560.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); similar to Os01g0915600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045188.1); similar to Os11g0442500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067817.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.41577922494736 -4.36889722827607 0.00114850276958317 1 4.69778703942265 11.4337961531922 -0.41577922494736 0.0823153942564783
AT1G07640_at 7.75718380819434 7.81817634068358 8.42700509981973 8.24547123159517 7.45697178533824 7.19626103696866 6.53720752745564 6.84491895762531 4.59684291039761 4.44408028247109 4.38115506088501 5.21118927098023 4.81014923621672 4.28573882276425 4.99670910684526 5.51332725638331 4.8407875871093 4.99087810722864 4.9180320646137 0.249746874211181 0.249746874211181 0.256888972384629 0.263401460244875 0.249746874211181 0.256755214271886 0.249746874211181 0.253855520364921 0.283715952770135 0.255658556798098 0.256973521994704 0.252016403128721 0.253480849298943 0.252658440621964 0.257570231295459 0.249746874211181 0.260884969124235 0.253417703012999 0.252729990971038 1 1 - 2354704 2355225 2354965.545 2354351 2356224 - gene protein_coding_gene FALSE TRUE AT1G07640.1|AT1G07640.2|AT1G07640.3 OBP2 (OBF BINDING PROTEIN 2); DNA binding / transcription factor|OBP2 (OBF BINDING PROTEIN 2); DNA binding A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. Identical to Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF-binding protein 2) (DOF1.1) [Arabidopsis Thaliana] (GB:Q8L9V6;GB:Q8W4A2;GB:Q9LQN7;GB:Q9XGU6); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G28810.1); similar to Dof domain, zinc finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95257.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)|Identical to Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF-binding protein 2) (DOF1.1) [Arabidopsis Thaliana] (GB:Q8L9V6;GB:Q8W4A2;GB:Q9LQN7;GB:Q9XGU6); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G28810.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE94576.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.408906175082427 4.3687566674966 0.00114876952120479 1 4.69758666898178 12.3012629193996 0.408906175082427 0.0772628614630822
AT1G17200_at 8.67705402599678 9.36068210346931 7.83380904695788 7.97699993550182 9.37154473763932 9.0502108887206 9.39467494439356 9.54235641471357 8.84543573713605 8.98997360808365 8.50722437459967 8.96341981958542 9.33319721056174 8.8019801260955 8.02762548446466 8.66234802769227 8.07702644928101 8.82458351103212 9.08121769699345 0.193969285830476 0.170434254008081 0.184719232009014 0.183210120348840 0.177970849926367 0.173320763909746 0.175825161209113 0.172843874013120 0.180209555337793 0.169994133953145 0.176603991470860 0.173363308565028 0.168745633423810 0.177205044195106 0.19294198894343 0.170341140825443 0.208728022419192 0.170539614190248 0.170165737662800 1 1|0 +|/ 5878577 5879813 5879399.2 5878405 5880034 + gene protein_coding_gene FALSE TRUE AT1G17200.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT3G14380.1); similar to hypothetical protein [Gossypium hirsutum] (GB:CAC84114.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.504042054297698 -4.36833890864079 0.00114956271367007 1 4.69699113161522 17.7118588319167 -0.504042054297698 0.135482708931799
AT4G30950_at 11.5665689541006 11.6348501180358 11.2408096200751 11.2139949485365 11.3111431742346 11.2601246214795 12.1532606247164 12.2225780160258 12.5444846578052 12.3017463044729 12.4260634819190 12.3376786633487 12.1834652223646 12.3427980223892 12.4120614244148 12.3528087633192 12.1518982452690 12.2728079937788 12.3160023407697 0.059937148560128 0.0580405948148415 0.0595825198292668 0.0568922667854958 0.0576649970581598 0.0635516489394732 0.0600565595733574 0.0578635784450794 0.06302754948015 0.0586967126829252 0.0561428333979724 0.0559374604316147 0.0577423888419773 0.0592778402527868 0.0571511119483879 0.0561659985813667 0.0621978288785891 0.0581472030946746 0.0571253714087764 4 0|4 /|- 15057284 15058003 15057633.7 15056981 15059800 - gene protein_coding_gene FALSE TRUE AT4G30950.1 FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition. Identical to Omega-6 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) (FAD6) [Arabidopsis Thaliana] (GB:P46312;GB:Q9M094); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to omega-6 fatty acid desaturase [Descurainia sophia] (GB:ABI73993.1); similar to Omega-6 fatty acid desaturase, chloroplast precursor (GB:P48627); similar to chloroplast omega-6 fatty acid desaturase (GB:AAA92800.1); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261) -0.357629855526898 -4.3668985559252 0.00115230189496023 1 4.69493761461162 23.9240956737087 -0.357629855526898 0.0195705907353271
AT4G33480_at 6.86201075155313 6.6842278633857 6.73109748839906 7.0968956259179 7.59578938863629 7.05502394736291 6.12303693747545 6.37505974054913 6.1247410851707 5.83971776815708 6.17935068746689 5.71070813877365 6.13142936600462 6.37843796547056 6.50909722475196 6.1575099804661 6.4367587013412 6.33863874542269 5.64575850200344 0.223480946718396 0.212243526680697 0.213155888302412 0.213231218523223 0.230795384299382 0.225550001163606 0.218038621109878 0.212510510532046 0.233846301288433 0.217247754314126 0.209673878738695 0.210388010358780 0.221253493453305 0.212701250123142 0.215071725520947 0.210837683534485 0.213367892021636 0.216837511881604 0.223999130611079 4 4|0 -|/ 16107872 16108362 16108181.556 16105614 16108649 - gene protein_coding_gene FALSE TRUE AT4G33480.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79278.1); similar to OSJNBb0020J19.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE05783.2); similar to Os04g0692200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054366.1) 0.484393344386663 4.36660059432476 0.00115286939511363 1 4.69451276731649 12.8655496194046 0.484393344386663 0.124954310061637
AT1G74650_at 2.04347373980075 2.32024711826679 3.2916037275572 3.27838495711951 3.58874037073879 2.86014876706478 3.24750309034691 3.34741942918871 2.7620164279928 3.24323830330700 3.3961324931395 3.28439013397788 3.68825799330273 3.64159061633422 3.33502596720736 3.22519268111526 3.40108836396648 3.99151840920265 2.99763228974257 0.207984320117441 0.197824159508177 0.215987820280519 0.206602523213796 0.201247187578670 0.212756484169996 0.197407072184336 0.201387471512427 0.195902975719956 0.205861703855837 0.194208786580468 0.196041661566415 0.194208786580468 0.194208786580468 0.198182587319384 0.196749416884182 0.205691850589168 0.203615937945675 0.194208786580468 1 1 + 28045949 28046396 28046110.273 28044852 28046656 + gene protein_coding_gene FALSE TRUE AT1G74650.1 AtMYB31/AtY13 (myb domain protein 31); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB96 (myb domain protein 96), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62470.2); similar to MYB60-like protein [Vitis vinifera] (GB:ABK59040.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.504747926576291 4.36599682547283 0.00115402023686502 1 4.69365184171850 6.24537111132454 0.504747926576291 0.136000184247145
AT3G55850_at 6.68992058701801 6.57991588052663 6.17200709244332 5.57634948006026 5.69253930450904 5.23003606209199 5.37189025762078 5.37348328846481 4.95055049041794 4.87302205041636 4.37704485422803 4.70359006861324 4.27120717310507 4.75719352078044 4.34859439467331 4.42727255281585 4.13283543764801 4.57359442380835 5.49687898305547 0.253764635238863 0.256816606489077 0.254601212935124 0.253224620475719 0.258894985950671 0.273490026066446 0.260501610060313 0.258971163040300 0.256241165401488 0.255858681105056 0.25093509081068 0.262935607658258 0.262144898271134 0.255925008367298 0.255552599535189 0.251335594494588 0.259433970909186 0.254850932695217 0.255793489414338 3 3|0 -|/ 20732956 20733738 20733351.222 20732699 20736872 - gene protein_coding_gene FALSE TRUE AT3G55850.1|AT3G55850.2 LAF3/LAF3 ISF1/LAF3 ISF2 (LONG AFTER FAR-RED 3); hydrolase Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.|Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids. similar to Os01g0952700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045422.1); similar to Amidohydrolase 3 [Acidobacteria bacterium Ellin345] (GB:YP_592518.1); contains InterPro domain Metallo-dependent hydrolase, composite; (InterPro:IPR011059); contains InterPro domain Amidohydrolase 3; (InterPro:IPR013108); contains InterPro domain Amidohydrolase-like; (InterPro:IPR011550) -0.496985070026146 -4.36549763610247 0.00115497264948419 1 4.69293999319708 10.6136346080113 -0.496985070026146 0.131887730001573
AT4G23320_at 5.38103879557854 5.48601624967155 5.45107378308672 5.20585593089321 5.11683429654328 4.05070056048304 2.84710156785453 2.66163917366767 5.12455150156281 4.14242595492319 2.47114463980076 2.53340714082474 3.24609133813458 2.99946565458594 2.65641969911601 2.73853725356526 3.28888734450213 2.39118886020363 5.41757508686629 0.298853847042621 0.293963584895476 0.295315622080488 0.294367196691858 0.286484615579529 0.294160428544562 0.281523803781037 0.287947334676097 0.28418983761377 0.281523803781037 0.289600701524753 0.294965304870607 0.293712766595472 0.284272623196214 0.286657238417644 0.281523803781037 0.285341778104166 0.291900324678908 0.281523803781037 4 4 - 12189192 12190214 12189490.455 12189192 12191636 - gene protein_coding_gene FALSE TRUE AT4G23320.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23290.2); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.621020455191988 -4.36500182443629 0.00115591943339113 1 4.69223292116365 8.36777933928518 -0.621020455191988 0.192875575804145
AT1G66960_at 4.25474904360074 3.87661601989514 4.03412564819537 4.16011847647296 3.89709685920197 3.95389641101703 1.21370455807721 1.72156372483513 2.18120050313097 1.41499582975861 1.36721931324847 1.23504482182875 1.76675441891081 1.24872195473667 1.76972453799247 1.62083581451774 1.54196746464117 1.42602136655241 1.85860012170200 0.259820237052248 0.27956262829632 0.260518353865850 0.256737800569301 0.255336908580226 0.258483562440049 0.247169588982427 0.250038677535871 0.250839229266657 0.25113221650306 0.245766021503610 0.255764705070154 0.245766021503610 0.252329466936860 0.2513557412706 0.255534966638801 0.251149419781807 0.247886478187534 0.245766021503610 1 1 - 24988830 24989638 24989292.636 24988604 24993460 - gene protein_coding_gene FALSE TRUE AT1G66960.1 lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to pentacyclic triterpene synthase [synthetic construct] (GB:AAG41762.1); similar to beta-amyrin synthase [Medicago truncatula] (GB:CAD23247.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.461710869404739 4.36470823261201 0.00115648044913927 1 4.69181421395496 5.04663469087065 0.461710869404739 0.112153027845845
AT2G02620_at 1.38607671184217 1.22105879301626 1.06490173452857 1.20963441458283 1.31641612559590 1.34875653181894 1.78457465228322 1.81500810502409 1.88600188829043 2.12020612453287 1.46204126169959 1.42540536210798 1.49444816704974 1.25359984565313 1.50605642266071 1.45113956670195 1.86280024744487 1.36642884998301 1.68609808878670 0.222099704872674 0.212406237615729 0.220447444043899 0.214429606726636 0.213911227155525 0.216347348159795 0.220637983011973 0.212406237615729 0.216220953746706 0.213488295895216 0.22019273467515 0.218988454536666 0.214516401256049 0.21487019084397 0.212912492030277 0.216585117448219 0.221502920191289 0.220320372664297 0.213377686654432 2 2 + 718663 719192 718973.091 717255 719375 + gene protein_coding_gene FALSE TRUE AT2G02620.1 DC1 domain-containing protein / PHD finger protein-related similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02640.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02680.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02610.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.368223882850293 -4.36442057247101 0.00115703040705636 1 4.69140395263674 3.08089104989448 -0.368223882850293 0.0387544160787364
AT3G01240_at 0.88037506705672 1.25879806864098 1.10117486374143 1.14343953146764 0.880549495505249 1.02203059076920 1.01691076536372 1.04797767338502 3.40369714274634 1.59636199470692 1.24974438162009 1.73066318949851 1.25019492497826 1.21430349103068 1.09745842876983 1.21633030011811 0.931787002222802 1.15135540678749 1.04705265642167 0.200863812150000 0.208616704499960 0.201836060190634 0.20017547477582 0.20557121830508 0.205873079319884 0.201975090475680 0.201722269146008 0.234202856164388 0.201326208131044 0.201818609914223 0.201205971337673 0.205264857011846 0.200934009159096 0.209742177662483 0.200051564361206 0.200442735707975 0.205536970931228 0.206431799745424 3 3 - 78562 78916 78723.818 78383 79044 - gene protein_coding_gene FALSE TRUE AT3G01240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01230.1) -0.399845531952076 -4.36441209886260 0.00115704661132992 1 4.69139186735974 2.66687379295118 -0.399845531952076 0.0705019525181582
AT3G14750_at 5.55256338997677 5.49622397760317 5.82272553346485 5.56635524445984 5.64197082190837 5.74055927105027 5.46599753023859 5.65123632155852 5.57878527711913 5.53276223626696 4.59095878653788 4.7167269615550 4.55659995839373 4.91121020377394 4.52510701213380 5.03827402060322 5.21734167731977 4.2754443969822 5.84335901829668 0.220316210603579 0.216482033183375 0.218850997992223 0.218349795686437 0.214523653065621 0.226042698119811 0.214609720898726 0.214523653065621 0.226368029503706 0.216525670337552 0.222999709300546 0.223316156362060 0.221270925629281 0.221475192613556 0.218776043172261 0.216539827405306 0.225328302688768 0.226019166143723 0.215726191349510 3 3|0 -|/ 4953778 4954934 4954180.556 4953583 4955663 - gene protein_coding_gene FALSE TRUE AT3G14750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67170.1); similar to Os03g0818000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051704.1); similar to Os07g0508200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059743.1); similar to myosin-like protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96059.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.385640110260953 -4.36388909907369 0.00115804721630409 1 4.69064592907348 10.8075007051442 -0.385640110260953 0.0581558808139664
AT3G13230_at 6.63219942696796 6.98287359431931 5.85567611959168 6.54681331070136 5.47476810272611 5.3799389731227 6.35527514945132 6.69759869783719 4.86922018940627 4.48807847579151 4.02138235600165 4.68314668966201 4.30069530327721 4.18078238397629 5.12477072259303 4.56844491951352 4.03686635895312 4.2622235008829 4.43599893735404 0.244809098499088 0.245509203270805 0.251267124448654 0.240226680157331 0.251623908380928 0.256341269735677 0.249643774184901 0.250300435734335 0.248812526849743 0.241521351009737 0.249643734656875 0.240671872441303 0.239634463867123 0.241650992833408 0.244784044292046 0.241023619089245 0.248444721770777 0.244766627681280 0.239634463867123 3 3 + 4270556 4271041 4270766.636 4269985 4271211 + gene protein_coding_gene FALSE TRUE AT3G13230.1 nucleic acid binding similar to Isopenicillin N synthetase; KH, type 1 [Medicago truncatula] (GB:ABE83111.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.526582214384146 -4.36284567224954 0.00116004621510099 1 4.68915758898739 10.7381703702771 -0.526582214384146 0.147535669134450
AT1G27000_at 9.22522363702043 9.40109163159302 9.8134836973969 9.76599190818507 9.60425129650594 9.48824398467595 9.52385943261772 9.36020847676778 8.17436779761814 8.77626657130267 9.03503825426455 8.84502038946494 9.04367017506065 8.92004240282058 8.89776648515915 9.09011876565562 9.26390197924188 8.70259800698458 8.59702223687177 0.137599571222895 0.136022457514241 0.141824263795206 0.136553317874764 0.141358246578583 0.150434061768645 0.145464596507944 0.131256517451780 0.158618364203432 0.146800901168257 0.142172043248514 0.142406484426444 0.135575879053587 0.132542389183173 0.142494858933852 0.131256517451780 0.138915649071565 0.142449155437608 0.152039101510879 1 0|1 /|+ 9374876 9376276 9375699.857 9373913 9376707 + gene protein_coding_gene FALSE TRUE AT1G27000.1 bZIP family transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02730.2); similar to bZIP transcription factor bZIP109 [Glycine max] (GB:ABI34660.1); contains InterPro domain Protein of unknown function DUF1664; (InterPro:IPR012458) 0.374640474629264 4.36265011965597 0.00116042125737682 1 4.68887863380031 18.2681218043932 0.374640474629264 0.0468924984844738
AT2G21300_at 3.97786193833021 3.90932157256787 3.6482782069338 3.5714809454262 3.99374786213148 4.03151019360889 4.88026994059043 4.7342258122169 4.40235757150205 3.91568118621647 3.60422040669397 4.12925355740521 3.70395916468087 3.98598646932641 4.42325153001281 3.86400244118773 3.96538371120067 4.06705385506543 4.07263740410322 0.230514909734347 0.230251738925595 0.245825725626438 0.235135495334632 0.228573591893765 0.244585957430909 0.251275931547388 0.253860844737479 0.241908895171437 0.229673060547951 0.240856280044412 0.236606409495450 0.238457711113471 0.238205878018604 0.23474448067395 0.235593121870346 0.231050105823742 0.247367955881505 0.231553865161729 2 2 - 9122566 9123305 9122944.9 9121235 9127027 - gene protein_coding_gene FALSE TRUE AT2G21300.1|AT2G21300.2 kinesin motor family protein|microtubule motor similar to kinesin motor family protein [Arabidopsis thaliana] (TAIR:AT4G38950.1); similar to kinesin heavy chain [Zea mays] (GB:AAK91812.1); similar to putative kinesin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD46370.1); similar to kinesin heavy chain [Zea mays] (GB:AAK91822.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.363251004614271 -4.36252822399049 0.00116065510036391 1 4.68870474685305 8.142394198586 -0.363251004614271 0.0316034406744627
AT1G51570_at 8.18755373146538 8.38062764027072 6.68688494858777 6.88633342912308 7.82512669669466 7.47187484809142 7.42697216431957 8.21059257088433 8.68838454646655 7.9301815892917 8.53165977012578 8.3369545958332 7.75395142823262 8.31088667508703 8.42256816501502 7.77071764038849 7.26799450217631 7.8866726352516 8.24849813975881 0.194766616015873 0.178696890779391 0.195050953829333 0.203949520408748 0.182241482827926 0.192793506590943 0.185602603023988 0.176557168829626 0.180016027243835 0.182685918798315 0.180107853018551 0.174143884914549 0.173909677308759 0.181971053284929 0.177267187054166 0.181771929961106 0.202449231140424 0.181493941926630 0.182335634195515 1 1 - 19126046 19126507 19126250.636 19125838 19128356 - gene protein_coding_gene FALSE TRUE AT1G51570.1 C2 domain-containing protein similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12970.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57880.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.543863647384684 -4.36160032094616 0.00116243679692463 1 4.68738099278805 15.7965943045227 -0.543863647384684 0.156315885849965
AT4G35070_at 2.64400477666045 2.75198286415994 2.99959582356014 3.13453717166374 2.49893362608242 2.44391936167553 1.97659449407361 2.08518581240273 2.18021581977687 1.70996065308376 2.03820284760786 2.26498377130064 2.00074876934609 1.90407619597311 2.40221938218782 2.36601408676694 2.02681963731579 2.343511923363 1.63096783774819 0.230177535362736 0.229038431510070 0.234421052676315 0.233146093752948 0.233727973638925 0.234079463736288 0.228695447560688 0.227024131905975 0.233698834310502 0.230322893721895 0.225982696516548 0.225069784937121 0.235604345207901 0.230720621407533 0.225608665632787 0.226381565404625 0.231670644372939 0.228067831294728 0.233351983424034 4 4 + 16695089 16695362 16695231.2 16694175 16695703 + gene protein_coding_gene FALSE TRUE AT4G35070.1|AT4G35070.2 similar to SBP1 (S-RIBONUCLEASE BINDING PROTEIN 1), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G45976.1); similar to S-RNase binding protein 1 [Solanum chacoense] (GB:AAS76633.1); similar to Os04g0403200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052696.1); contains domain RING/U-box (SSF57850); contains domain SURVIVIN RELATED (PTHR10044:SF13); contains domain INHIBITOR OF APOPTOSIS (PTHR10044); contains domain no description (G3D.3.30.40.10)|similar to SBP1 (S-RIBONUCLEASE BINDING PROTEIN 1), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G45976.1); similar to S-RNase binding protein 1 [Solanum chacoense] (GB:AAS76633.1); contains domain RING/U-box (SSF57850); contains domain SURVIVIN RELATED (PTHR10044:SF13); contains domain INHIBITOR OF APOPTOSIS (PTHR10044); contains domain no description (G3D.3.30.40.10) 0.366372574392163 4.36094154307514 0.00116370347765691 1 4.68644108991451 4.57119599808595 0.366372574392163 0.0365825764999757
AT3G25860_at 7.46644677760017 7.68621741540798 6.11570246887556 5.72871310636933 6.6095990538111 6.18205308372323 8.4127442553557 8.23350464681122 7.66774285138706 7.31578535052668 8.43754283777998 8.82640668884274 7.31930076681348 8.10560619662656 9.02587795905254 7.81566100290782 7.22526888431792 8.31066816446406 6.80130023505082 0.203053882362348 0.204057528583494 0.201124403705821 0.216969108243747 0.203627925982561 0.212120969845666 0.206864755183813 0.209058486409157 0.211859960570892 0.205409178963128 0.204434497146897 0.208538170542159 0.205804062408288 0.205391349107948 0.219125573563581 0.201431162433885 0.205987703637052 0.211301092468149 0.212192675036622 3 3|0 +|/ 9462712 9463764 9463132.4 9461797 9464024 + gene protein_coding_gene FALSE TRUE AT3G25860.1 LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. similar to EMB3003 (EMBRYO DEFECTIVE 3003), dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G34430.1); similar to dihydrolipoamide S-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95959.2); similar to Os08g0431300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061862.1); similar to Os09g0408600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063142.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) -0.459514630993257 -4.35903319243087 0.00116738097656825 1 4.6837179769625 14.7518231217887 -0.459514630993257 0.111211327291259
AT2G16900_at 5.33028952831339 5.09316463140617 6.14006788962622 6.20684917332293 5.78441607873258 5.19304276186305 5.20745265729099 4.83272866386534 4.66825935879512 5.05103166221267 5.22184620136826 5.41481887254457 5.00908174686575 5.47345291874367 5.38846468395322 5.32619709903116 4.63262287415369 5.1625094742952 5.09823824335089 0.172053042877640 0.173891212404336 0.176403442347224 0.181863907363800 0.175722780514129 0.172613888809820 0.177511460052937 0.174365135288808 0.179196839345328 0.177607554542996 0.174166238132472 0.172000885979301 0.171576186978829 0.171576186978829 0.174688038639680 0.176480731705804 0.177584234520703 0.18449373525423 0.175443291263605 2 2 - 7330939 7331455 7331260.909 7330697 7333303 - gene protein_coding_gene FALSE TRUE AT2G16900.1|AT2G16900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35110.3); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.489816459041886 4.35840610456515 0.00116859206756661 1 4.68282302737726 10.5449017507138 0.489816459041886 0.128437392731151
AT1G14740_at 6.95703133430871 6.89481431755633 6.63167413068305 6.59794044584343 6.94491193584763 7.16789160885771 5.48904875802575 5.17117721390564 5.39869345742306 5.58980406875815 5.52573403700324 6.02910265699779 5.01178594484981 5.86960931432629 5.22119053662742 5.93505568458781 5.7978289576125 5.32784783627 5.52405037577447 0.200850508700414 0.19764467328021 0.198609739723022 0.200367056528701 0.208955651338969 0.206687958892672 0.198065603546117 0.195506534331125 0.222337114780810 0.194730167377494 0.201509766951101 0.198264740070505 0.207468017111505 0.202440021647419 0.197978676238650 0.194730167377494 0.206782052580853 0.202258924282778 0.199175524954766 1 1|0 -|/ 5075482 5076032 5075789.9 5075208 5077786 - gene protein_coding_gene FALSE TRUE AT1G14740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63500.2); similar to Potyvirus VPg interacting protein [Nicotiana benthamiana] (GB:AAP22954.1); similar to Os03g0239200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049504.1); similar to Os03g0218300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049395.1); contains InterPro domain Arabidopsis thaliana 130.7kDa hypothetical protein; (InterPro:IPR004082) 0.396586680703989 4.35809564756503 0.00116919213861373 1 4.6823799344629 12.0287872206383 0.396586680703989 0.0683009668470191
AT1G32450_at 7.87187578851405 7.78359836998486 8.39101275648792 8.3950803169858 8.5265951203657 8.42745433048635 8.66159770422752 8.76342070749233 9.08037435477958 9.18395770009127 8.3960673229072 7.12052357401021 7.35773382555058 7.57942699963881 7.62655602224105 7.73314606747801 9.00649843410944 8.06570869399265 7.97970251717911 0.152496213926991 0.147108524324427 0.145038769061997 0.152892038254046 0.142599675524441 0.151998597686132 0.153715932060395 0.151974036153195 0.156028146872083 0.149462801625513 0.146937302876887 0.151688608722097 0.150527438306592 0.146409391241607 0.142599675524441 0.146247506766056 0.154472734706015 0.144199354281813 0.149898430217970 1 1|0 -|/ 11715449 11715952 11715667.1 11715130 11719950 - gene protein_coding_gene FALSE TRUE AT1G32450.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G19640.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT4G21680.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32535.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE93051.1); similar to transporter, major facilitator family, putative [Medicago truncatula] (GB:ABE88005.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.361195708999453 -4.35636807967828 0.00117253719595729 1 4.67991401532495 16.6569389575719 -0.361195708999453 0.0289608248619575
AT3G28760_at 5.45109228401625 5.27655440240042 4.71502717053834 4.6601612870681 5.2110839967499 4.65334595935081 7.01318424996336 6.2161721999518 5.21489492317049 6.15143022039331 5.08603867387614 6.12648514318983 5.45530216511862 5.9143769132925 6.21588488738506 5.62021351838172 5.723967980034 5.74706767125157 5.74632647168385 0.213272368374726 0.201809134583533 0.220447452432953 0.207637334831301 0.196510429017179 0.207724576584110 0.202907922228172 0.209073567950214 0.214418901576118 0.198872263441602 0.199935326816884 0.200561694195237 0.202010060674066 0.209897583674023 0.204862227836066 0.200180041464254 0.205724111120277 0.198091297447868 0.197375877283308 3 3|0 -|/ 10794405 10795195 10794811 10794192 10796549 - gene protein_coding_gene FALSE TRUE AT3G28760.1|AT3G28760.2 similar to 3-dehydroquinate synthase [Methanothermobacter thermautotrophicus str. Delta H] (GB:NP_275723.1); similar to Os03g0170300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049107.1); contains InterPro domain 3-dehydroquinate synthase; (InterPro:IPR002812) -0.573698133336272 -4.35513741169585 0.00117492623233358 1 4.67815707230211 11.1197698558292 -0.573698133336272 0.171295592550105
AT4G02330_at 3.18519516110333 3.54604126759454 2.39803170909568 2.21848232546518 2.19211284891138 2.30733730700876 2.20344893172697 2.27616471576987 4.33843493451545 2.62221566348233 6.64022469738313 7.1701562326992 2.23144612107504 6.20124540622548 5.62179156054687 2.11914202795758 2.30058478424082 4.23871771632228 2.74809287617552 0.276189746001737 0.283889892854482 0.27589457409285 0.28231680816061 0.278620264446319 0.277814103416154 0.280974040069718 0.277919483123752 0.287387720519068 0.280276931072703 0.285969122231985 0.28184920143326 0.278358254071169 0.297690277212987 0.289367067351733 0.277826409147751 0.291716221530118 0.28180970534207 0.280092199616185 4 4 + 1034369 1034803 1034592.364 1032413 1035037 + gene protein_coding_gene FALSE TRUE AT4G02330.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G02810.1); similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G47550.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.402722136076716 4.35308382425197 0.00117892412884266 1 4.67522475444934 6.44168247984983 0.402722136076716 0.0736270121989962
AT3G43590_at 6.79785284015344 7.27276985028324 6.8756038058521 6.7704420553386 6.72294757434115 6.57489813338191 7.04889938904916 7.44410032970339 7.01792614607605 7.07637911090335 6.65914223579102 6.839749035136 6.68848073953121 6.40097796700137 6.92235195648598 6.21677177950576 6.27571715976996 6.59876259685794 7.1722941643202 0.256341551334041 0.248300142147764 0.254133946318327 0.268067131246523 0.248825770005171 0.255440237890014 0.2578142115364 0.247242728618839 0.258711979893396 0.246844218380021 0.255375607096436 0.252908364742738 0.245740716315034 0.249355390020503 0.246945971825394 0.243694374346527 0.264656150285779 0.247248560063719 0.247428816937045 3 3|0 +|/ 15522573 15523162 15522933.4 15520609 15523562 + gene protein_coding_gene FALSE TRUE AT3G43590.1 zinc knuckle (CCHC-type) family protein similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT3G43490.1); similar to E3 ubiquitin ligase interacting with ar (GB:CAL55153.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.459277500037748 -4.35306516259517 0.00117896052440688 1 4.67519810432922 13.7704945760261 -0.459277500037748 0.111443385039925
AT3G58200_at 2.18956409953957 2.00769948308876 2.15528852119456 2.40339511995031 2.09752839525343 2.34176899834302 1.35975394994351 1.77776690040744 1.644428345916 1.73926642338217 2.40505643892446 2.17020013368367 2.25991283062681 2.21358851514640 2.27405736141272 2.20730450938478 2.18630850525091 2.35970820929481 2.00638752700312 0.180795729684419 0.183234036508849 0.186317269228811 0.180208600031942 0.179232368471636 0.178554031007346 0.177056479998921 0.177504387629144 0.180455556993768 0.181436635357781 0.176602530100620 0.183032829279241 0.180188791140399 0.179565037014342 0.187346395941215 0.177120526608741 0.186414005488130 0.186630249316642 0.176602530100620 3 3 - 21571080 21571721 21571343.455 21570870 21572442 - gene protein_coding_gene FALSE TRUE AT3G58200.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58210.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) 0.43931105731949 4.3523211620469 0.00118041249787353 1 4.67413557472604 4.06970126433141 0.43931105731949 0.0992646019798137
AT3G07360_at 7.9582712629265 7.5872645665648 8.56575362569149 8.498582780051 9.39371578888217 9.1025289774446 9.06079669355053 8.68378059452641 8.09075487976006 8.54183295276245 9.21317470032441 8.71651593399387 9.21777874199792 9.06099846308785 8.19585483538235 8.7071678839992 9.16479906499239 8.22549988882593 8.81627806746087 0.152077629460032 0.178309472021860 0.159942026023046 0.158649002091885 0.159543295782303 0.154958284370953 0.152985286781268 0.155445473017739 0.166853838947395 0.158473572472511 0.156801424544919 0.151826127610623 0.155944759341958 0.166622548530653 0.165905889617488 0.162044823364875 0.153306823653605 0.167326091693805 0.163097930762259 3 3 + 2356028 2356593 2356208.455 2354725 2356860 + gene protein_coding_gene FALSE TRUE AT3G07360.1|AT3G07360.2|AT3G07360.3 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18320.1); similar to U box [Medicago truncatula] (GB:ABE90370.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613)|similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18320.1); similar to U box [Medicago truncatula] (GB:ABE90370.1); contains InterPro domain Armadillo; (InterPro:IPR000225) 0.448692701353147 4.35204958588484 0.00118094296614136 1 4.67374770625798 17.2541762807397 0.448692701353147 0.105135342798654
AT4G02080_at 10.5717809647804 10.6915373167237 10.8770661142700 10.9956549658748 10.8315131461929 11.0657147718084 10.0726224754201 10.5323993787941 10.2316806507179 10.1785242740360 10.6620651009175 10.4831153827733 10.6595184991758 10.5777510051755 10.5478741220328 10.644242139478 10.6053094830697 10.5723288133441 10.2121158801447 0.0773851319475464 0.0774506508558533 0.076865708913301 0.0801452840359749 0.075413857520177 0.0772155084169145 0.075509183297045 0.0774640427333895 0.0780726630879699 0.0776405020580533 0.0748801136855124 0.0753755906353571 0.0769352381885812 0.079189949876161 0.0748700112360012 0.0748700112360012 0.0798395642600139 0.0757585691641619 0.0748700112360012 4 4|0 +|/ 921625 922448 922085.9 921454 922777 + gene protein_coding_gene FALSE TRUE AT4G02080.1 ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2); GTP binding A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Identical to GTP-binding protein SAR1A (SAR1A) [Arabidopsis Thaliana] (GB:O04834;GB:O04747;GB:O04748;GB:O04835;GB:Q42142;GB:Q96296); similar to GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G62560.1); similar to GTP-binding protein SAR1A (GB:O04266); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.430993757776618 4.35148941957347 0.00118203792531002 1 4.67294763195368 21.1055190600057 0.430993757776618 0.093936982582536
AT3G53650_at 2.06873799138135 1.77871666303261 1.95716038124161 2.30512710534359 1.67344968843074 1.76034234055790 2.44356962279727 2.20116423929228 3.36357710011116 3.11964540218196 2.53697422232102 2.62969333298008 2.30836966785712 2.41520468833312 2.78819749877871 2.13945597294302 2.33399933769947 2.44104521693457 2.81688874321331 0.180130204130343 0.183430935814395 0.179041686688081 0.176878003563446 0.182834914186047 0.182637132962366 0.186027850565288 0.183153217117054 0.185308702803779 0.187179872064677 0.176244964228305 0.181487198633391 0.183579429364925 0.180724702823417 0.181776956697117 0.176470310600197 0.189380602865353 0.178401463175042 0.183761631488998 3 3 + 19900336 19900726 19900575 19900336 19900752 + gene protein_coding_gene FALSE TRUE AT3G53650.1 histone H2B, putative Identical to Putative histone H2B.8 (HTB6) [Arabidopsis Thaliana] (GB:Q9LFF6); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT2G37470.1); similar to Probable histone H2B.3 (GB:Q1SU99); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.424973419918503 -4.34754221715761 0.00118978376340907 1 4.66730847992408 4.79811079104285 -0.424973419918503 0.0901719281087938
AT1G02400_at 2.24494295872243 1.76401886011919 2.13479028908359 2.58792449648194 2.45683688590697 2.14952608339126 1.38875930508952 1.32560807043550 2.98401539934794 2.06389690870367 2.59628556323843 2.43925930420297 2.13056421298546 3.09045152253131 2.14692626305317 3.34106208213884 1.66483429551138 1.94969767455124 1.25523297425715 0.207863506242036 0.204265859556574 0.207102803595883 0.210039761690261 0.207217547869452 0.21278693291331 0.207375554720727 0.207430155541817 0.211532528222082 0.204112156327792 0.205706031382633 0.208889560327541 0.208407051342527 0.208958926812863 0.20619080507719 0.212336666594933 0.214788597418039 0.212270957911678 0.209035633385075 1 1 + 488833 489352 489059.545 486801 489577 + gene protein_coding_gene FALSE TRUE AT1G02400.1 ATGA2OX6/DTA1 (GIBBERELLIN 2-OXIDASE 6); gibberellin 2-beta-dioxygenase Encodes a gibberellin 2-oxidase. similar to ATGA2OX4 (GIBBERELLIN 2-OXIDASE 4), gibberellin 2-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G47990.1); similar to (GB:BAD99511.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.485136913732313 4.34676836676003 0.00119130856423125 1 4.66620262625398 4.26701763976023 0.485136913732313 0.126584087383233
AT1G12460_at 2.44410593546157 2.75931256707375 2.23077631774217 2.08663018807873 2.16836637494493 2.48261732041799 3.44443996888398 3.3437444590722 3.86769438217878 3.63992436313527 4.3791257566382 4.52584311463114 4.10984047485758 3.86588417860781 3.14847128527344 3.44501104247889 3.05986598717319 3.54286705375086 3.98861921768314 0.221139881627136 0.223642754079676 0.230774075917901 0.234393893221753 0.214458395005462 0.226549173753 0.218984060988043 0.219057810820327 0.215996622788689 0.222748929166952 0.227068957078175 0.217683087820514 0.219387311321254 0.215904710440511 0.219042743757964 0.213851928594181 0.213851928594181 0.225213453825048 0.223112191343428 1 1 + 4249844 4250381 4250121.818 4247247 4250628 + gene protein_coding_gene FALSE TRUE AT1G12460.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G62950.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM88626.1); similar to Os03g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048834.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.414134445824798 -4.34429890837013 0.00119618811343222 1 4.66267305334844 6.41584560779714 -0.414134445824798 0.0828182867784205
AT3G06660_at 5.60469928576871 6.038336686008 5.09911275334981 5.08060090254360 4.77350193690736 5.53226861307009 4.89637315382218 5.20904761014989 5.20163711639773 5.24893075128364 4.28878735472978 4.42277929807118 4.38934317361624 4.14451509103926 4.58642206519521 4.89484787503782 4.28721750217137 4.32553009457373 5.15597020507131 0.200345534901760 0.199906350777461 0.194523798145060 0.191918916268013 0.197376654563999 0.201946931499903 0.19824667424724 0.190474305824893 0.194233165485301 0.190069742757214 0.19388106162314 0.194361236821446 0.191057901287378 0.202499922086836 0.193945633225676 0.193620877118169 0.198315996076000 0.197127974703655 0.193255866249046 3 3|0 +|/ 2103863 2104724 2104285.889 2102477 2104912 + gene protein_coding_gene FALSE TRUE AT3G06660.1 PAPA-1-like family protein / zinc finger (HIT type) family protein similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT2G47350.1); similar to PAPA-1-like conserved re (GB:ABE83179.1); contains InterPro domain PAPA-1-like conserved region; (InterPro:IPR006880); contains InterPro domain Zinc finger, HIT-type; (InterPro:IPR007529) -0.550246091624692 -4.34267435487813 0.00119940958251416 1 4.66035055660587 10.0890474498967 -0.550246091624692 0.160659262574818
AT4G00900_at 3.29883213716642 3.24162823438253 3.61918061673336 3.64356265250469 3.20671527706184 2.86086952591812 3.33327946195098 2.98906630409285 2.73175071357662 2.73841343981488 3.47303857810486 3.29412525551325 3.14396773856446 3.12602772320607 3.4056642216207 2.89832525994334 3.35730746142621 3.59554264450561 2.2393266635523 0.216340608879325 0.209081099882911 0.212234041718289 0.217398163399003 0.211883869158247 0.209399273626478 0.217767385918109 0.210727397825271 0.210682779264168 0.219514361593345 0.214248230738661 0.211311032082637 0.215642431223610 0.213595270081607 0.213462266284938 0.218180985440661 0.213851857196172 0.216493024366191 0.224359012514376 4 4 - 382754 383195 383006.636 382663 386288 - gene protein_coding_gene FALSE TRUE AT4G00900.1 ECA2 ("calcium-transporting ATPase 2, endoplasmic reticulum-type"); calcium-transporting ATPase Type IIA (SERCA-type) Ca2+ ATPase, catalyzes the efflux of calcium from the cytoplasm. Identical to Calcium-transporting ATPase 2, endoplasmic reticulum-type (EC 3.6.3.8) (ECA2) [Arabidopsis Thaliana] (GB:O23087); similar to ECA1 ("calcium-transporting ATPase 1, endoplasmic reticulum-type"), calcium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT1G07810.1); similar to ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G10130.1); similar to calcium-transporting ATPase 4, endoplasmic reticulum-type (ECA4) [Arabidopsis thaliana] (TAIR:AT1G07670.1); similar to type IIA calcium ATPase [Medicago truncatula] (GB:AAL35972.1); similar to Calcium-transporting ATPase, endoplasmic reticulum-type (GB:Q42883); similar to putative calcium ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAN64492.1); contains InterPro domain ATPase, P-type cation exchange, alpha subunit; (InterPro:IPR006069); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium ATPase; (InterPro:IPR005782); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014) 0.416900035851133 4.33944952913628 0.00120583133537745 1 4.65573901147609 6.20243184256393 0.416900035851133 0.0851243827310636
AT1G01420_at 4.19772141443074 4.79866765206265 4.65294082291707 5.07792921785831 6.21816589556957 5.86916927670317 5.47331931059047 5.80755825821096 3.06918787685701 4.39738835304977 3.78054859828728 4.81036810466096 4.74525703789165 4.75080450442514 3.71998663862715 4.58608169042991 4.68080236522757 4.27960838871442 3.74739321424366 0.248118459753686 0.234372968608679 0.234372968608679 0.238801021500888 0.247095443510362 0.239338336780431 0.234372968608679 0.247872076932358 0.243428085027419 0.234372968608679 0.250114688077345 0.234372968608679 0.237460292460779 0.248629271992321 0.244934136472986 0.234372968608679 0.249475813489593 0.245556970888409 0.241991918574246 1 1 - 154591 155131 154891.818 154566 156011 - gene protein_coding_gene FALSE TRUE AT1G01420.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G01070.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.533213497877262 4.33907302601497 0.00120658342963688 1 4.65520049724274 9.34051997141778 0.533213497877262 0.152373214459401
AT3G58680_at 10.4991712527693 10.6797992983276 10.5769534763399 10.6520080622752 11.1367186192665 10.7718063799125 9.87717213052998 9.84035648653454 9.75772993977118 9.64326807533715 9.9234675556347 9.76985038757314 9.9827034272915 9.95010712693228 10.0958794543132 10.0026741022255 10.0313995719560 9.82735224390111 9.72796058728826 0.0926702114484917 0.090798156627619 0.0929861099851971 0.092511628377664 0.0909042978338948 0.0958421387026129 0.0914964359802009 0.0871429329286468 0.0931197549242126 0.090678158359725 0.0889850947715838 0.090505776700621 0.0898886475029278 0.0903101482377462 0.0901887431626267 0.0886560503665037 0.0902159246032619 0.0917599396477349 0.0907403310805449 3 3|0 +|/ 21718375 21719566 21718885.778 21718253 21719888 + gene protein_coding_gene FALSE TRUE AT3G58680.1 ATMBF1B/MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B); DNA binding / transcription coactivator One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated. similar to ATMBF1A/MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A), DNA binding / transcription coactivator [Arabidopsis thaliana] (TAIR:AT2G42680.1); similar to orf [Ricinus communis] (GB:CAA89698.1); contains InterPro domain Multiprotein bridging factor 1, N-terminal; (InterPro:IPR013729); contains InterPro domain Helix-turn-helix type 3; (InterPro:IPR001387); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.399261604335544 4.33872179327807 0.00120728548748676 1 4.65469810670988 20.3330392638414 0.399261604335544 0.0719324803043413
AT1G76580_at 6.3576986498284 6.41267894973333 5.97428767591323 5.89586461914277 7.4060095578164 6.50987791869926 5.39824313020312 4.71959038231067 4.66151871924066 4.51078126773106 5.13483785396299 5.21620371179435 4.70380650470324 4.48777839208484 4.47188615858082 5.20685565614723 5.11028017418342 4.74667756960462 3.92247743005738 0.248410797002431 0.226103683136558 0.237966806624621 0.24000425635867 0.239224245516194 0.235877190254135 0.225575771943130 0.235844002216757 0.236327801217274 0.236744377871779 0.227279041917380 0.225575771943130 0.232961125636739 0.240697938672479 0.23189937567514 0.225575771943130 0.246722606772600 0.226943597370621 0.233659511099005 1 1 + 28742706 28743288 28742994.909 28740222 28743811 + gene protein_coding_gene FALSE TRUE AT1G76580.1 transcription factor Identical to Squamosa promoter-binding-like protein 16 (SPL1-related protein 3) (SPL16) [Arabidopsis Thaliana] (GB:Q700C2;GB:Q8W4C0;GB:Q9C9K0;GB:Q9SMW9); similar to SPL14 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G20980.1); similar to Squamosa promoter-binding-like protein 16 (SPL1-related protein 3) (GB:Q700C2); similar to SBP [Medicago truncatula] (GB:ABE79674.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.622161055915178 4.3370710394674 0.0012105908170843 1 4.65233666153342 10.7091396396104 0.622161055915178 0.195237145294709
AT1G77060_at 5.51406110793207 5.8255556770656 3.03437080271481 3.60611863118256 5.3875560528262 4.80497496749695 6.07429599280606 5.54309059580408 5.20368956994219 6.14558038471831 6.24996149990917 6.34449577879993 5.56123333679133 6.11483853334662 6.85526296214733 6.12320829734581 6.32804517102541 6.0593425155969 6.17003747354987 0.224410320818984 0.209603805378911 0.223501154221149 0.221362981700552 0.210025858961777 0.215329133947306 0.205784091745039 0.207547531957577 0.21874679723778 0.207890026647363 0.219474250892829 0.214148498061779 0.213878332632582 0.210066425056350 0.209793025169505 0.210244465683264 0.223663092770231 0.211746089910611 0.215216546677074 1 0|1 /|- 28956707 28957229 28956948.5 28956579 28958403 - gene protein_coding_gene FALSE TRUE AT1G77060.1 mutase family protein Identical to Putative carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate phosphonomutase) (CPEP phosphonomutase) [Arabidopsis Thaliana] (GB:O49290); similar to mutase family protein [Arabidopsis thaliana] (TAIR:AT1G21440.1); similar to Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96021.1); contains InterPro domain Isocitrate lyase and phosphorylmutase; (InterPro:IPR000918); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.583108180356651 -4.33706363823477 0.00121060565801853 1 4.65232607289132 10.9959118057821 -0.583108180356651 0.176948232178964
AT1G14345_at 8.9665735394383 9.31833128332484 8.547144945738 8.91424316390332 8.81791762472353 9.08527028246142 10.0445442417649 10.6149015642080 10.5732117067982 10.3904814769164 10.6361535605820 10.5082547041315 10.3881587385161 10.4092886353638 10.0796517083349 10.4092889455463 9.8065198646651 10.0378773558524 10.2583920529386 0.125870203610386 0.116443128422297 0.139261292459711 0.130172094290343 0.123489777866585 0.124807258261209 0.120465117058980 0.120875937750213 0.119208922617228 0.119108892743466 0.126851705288621 0.120938393560219 0.119180943555653 0.123467652534786 0.123160142908782 0.122568917167624 0.125796808239297 0.118674580146307 0.117738519527658 1 1 + 4899304 4899707 4899482.909 4899140 4899974 + gene protein_coding_gene FALSE TRUE AT1G14345.1 similar to hypothetical protein 9 [Ipomoea batatas] (GB:AAV88073.1); contains domain ALDO/KETO REDUCTASE (PTHR11732); contains domain ALDO/KETO REDUCTASE RELATED/NUCLEIC ACID BINDING (PTHR11732:SF1) -0.508953104702269 -4.3356161691475 0.00121351178706241 1 4.65025506778581 19.6344962980328 -0.508953104702269 0.140086604600900
AT3G18820_at 9.02092741183122 9.57398410083528 9.81397095454587 9.9591453517211 10.1422529110590 9.21357182238294 8.63689955190513 9.0253190895655 8.85596705787809 8.82473152935274 9.98692792294198 9.33579227156183 9.74110838337003 9.21546080441355 9.17361418004233 9.10577673430684 8.7876021919323 9.05828014099331 8.57788352617381 0.168557956018663 0.168088504792637 0.179735121090812 0.173864373116039 0.174750678523552 0.180442319397814 0.165998016495568 0.170349411996129 0.167971436462404 0.175873379136112 0.176282377544835 0.171008043409732 0.168851346230361 0.176961931419029 0.171472827071108 0.169693792261644 0.172090464906225 0.171765952248995 0.171839803836249 3 3|0 +|/ 6485075 6485797 6485398.444 6484074 6486253 + gene protein_coding_gene FALSE TRUE AT3G18820.1 AtRABG3f/AtRab7B (Arabidopsis Rab GTPase homolog G3f); GTP binding similar to ATRAB7/ATRABG3E/AtRABG3e, GTP binding [Arabidopsis thaliana] (TAIR:AT1G49300.2); similar to unknown [Solanum tuberosum] (GB:ABB02623.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.632831172809995 4.33392702616296 0.00121691237668518 1 4.64783785362933 18.4499744158125 0.632831172809995 0.200345109139203
AT3G63310_at 8.16573611579779 8.53497547241894 8.94086649386612 8.739665718842 8.97513722996617 9.09862347150628 7.35281160916742 7.9798052847532 8.31209845920151 7.83936515883064 8.32550561662053 7.99131904919463 8.32879933954287 8.06105256869618 7.7555561108118 8.25728447363766 7.59866171323713 8.54370944257546 7.9976822665084 0.150603182093595 0.147114003971451 0.142077060108993 0.148830605438029 0.141992059910823 0.154854155053989 0.149681458056684 0.148470751684841 0.152025083369428 0.147666727225782 0.146583321342800 0.138561158135221 0.140344865125109 0.151814538936393 0.149792762552147 0.139386382987843 0.156720100515955 0.146946623796878 0.141068680400544 3 3|0 -|/ 23398921 23399669 23399231.6 23398831 23399960 - gene protein_coding_gene FALSE TRUE AT3G63310.1 glutamate binding similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT1G03070.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.494130926226741 4.33239598027768 0.00122000331102038 1 4.64564648336601 16.5521783416079 0.494130926226741 0.132382788342648
AT3G28930_at 7.2884906265496 7.33280952749983 7.39822923519609 7.56380463353182 7.3113630123102 6.62868903523656 6.23441982070554 5.88282760008437 7.18028272796755 6.72985583232235 7.05893701098281 7.8397137181656 6.84872373456016 7.5616186118874 7.23657125575064 6.98306668720491 6.63206473684576 7.3182005478264 6.26054479108553 0.19025709598275 0.190825536841675 0.188374187382023 0.193131855222452 0.187407813117223 0.208905155011898 0.194668108761992 0.192659440212763 0.195100663429848 0.191026542107206 0.183455301652979 0.185150462440095 0.188604762053192 0.193094321497602 0.189769074798704 0.183455301652979 0.19240312951877 0.190420141118378 0.198924677836236 3 3|0 -|/ 10961139 10961890 10961557.1 10960937 10962045 - gene protein_coding_gene FALSE TRUE AT3G28930.1 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 Identical to Protein AIG2 (Avirulence-induced gene 2 protein) (AIG2) [Arabidopsis Thaliana] (GB:P54121); similar to avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative [Arabidopsis thaliana] (TAIR:AT3G28940.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to Os02g0141000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045856.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 0.501092753068324 4.33182430884903 0.00122115953132044 1 4.6448281589657 13.9092907639033 0.501092753068324 0.136157868315673
AT3G16830_at 7.78264650077887 7.89613657713915 7.59511101556338 7.7410033917372 8.08841290488167 7.67314350645894 7.34376799596756 7.41343786199945 7.40754361781178 6.648020166347 5.49216178715585 6.08829986734675 6.47837451481773 6.08573688311038 6.24449753021744 6.6485358188706 6.31151433040501 5.66943798871832 7.27362216464384 0.227711087993382 0.231992600017802 0.227336183805253 0.227723136778511 0.238472848083242 0.235582803509926 0.244334336452014 0.230233232236158 0.238555933356455 0.230089080453004 0.229271087687826 0.228403005969629 0.232301087782215 0.237468515377235 0.232900638583350 0.225560554993932 0.248341476056664 0.227177640666192 0.233134614403867 3 3|0 +|/ 5736829 5737479 5737154.1 5731540 5737778 + gene protein_coding_gene FALSE TRUE AT3G16830.1 TPR2 (TOPLESS-RELATED 2) similar to TPR3 (TOPLESS-RELATED 3) [Arabidopsis thaliana] (TAIR:AT5G27030.1); similar to TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G15750.4); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABD28351.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE85670.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.408494169415787 -4.33145017702113 0.00122191684411928 1 4.64429257593678 14.3102317141563 -0.408494169415787 0.0795801512743143
AT4G32850_at 8.71290378932226 9.10507571742264 9.13529119683332 9.27625882218434 9.12133975877229 8.99838700337525 8.18259571793325 8.46001796445142 8.07227537904979 8.81138288916565 8.87547930629803 9.08116722376437 8.95114000629126 9.07176589470548 8.27177581810471 9.3646584716935 9.08688953623429 9.00769748720372 9.02889523159047 0.16334502662155 0.147585060519258 0.156384748409509 0.145165628510048 0.144141639058285 0.152393875564053 0.156824074289025 0.148000915564001 0.187191597947952 0.144759891208324 0.153576504111295 0.146937995770275 0.149648134400392 0.153880974486566 0.169406733948701 0.143288172995136 0.157838185850725 0.144612448951799 0.146698440539487 4 4 + 15853155 15853724 15853405.636 15849776 15854872 + gene protein_coding_gene FALSE TRUE AT4G32850.1|AT4G32850.2|AT4G32850.3|AT4G32850.4|AT4G32850.5|AT4G32850.6|AT4G32850.7|AT4G32850.8 nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase Encodes a nuclear poly(A) polymerase. similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G17980.1); similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G25850.2); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G17980.1); similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G25850.1); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT2G25850.3); similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G17980.1); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010) 0.421987391388597 4.33137302754707 0.00122207307026937 1 4.64418213091139 17.6746535219396 0.421987391388597 0.0892115130363886
AT1G22060_at 7.42471528567972 7.41947557132185 6.587912463586 6.11396295924177 6.94589479688018 6.7045142210209 6.97622564511416 6.69532648617879 7.68158424659986 7.47256355441168 7.95329069883771 7.5539970692149 6.8351647137649 7.4057463930293 7.00609572803988 7.20641678416996 6.42209679060691 7.34078369769134 7.53752817859905 0.212749628487895 0.207367107888420 0.222903681749059 0.229321169341656 0.211267918406980 0.216354493025863 0.214328155285960 0.209068867137310 0.231904735309829 0.207367107888420 0.215310392660968 0.207367107888420 0.213403389730254 0.223524441952385 0.215674470056900 0.207367107888420 0.238358614216766 0.21332806565063 0.211364650070059 1 1|0 -|/ 7773367 7774234 7773656.111 7773052 7780575 - gene protein_coding_gene FALSE TRUE AT1G22060.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G22000.1); similar to putative myosin [Oryza sativa (japonica cultivar-group)] (GB:AAO72668.1); similar to Os10g0363700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064442.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.44465382283779 -4.32919154468105 0.00122649920212436 1 4.64105878399778 14.2481739174394 -0.44465382283779 0.104095581984099
AT1G76730_at 9.89354776935244 9.76151356906722 9.71791088444745 9.6111912399383 9.74193178467035 9.34750829084797 10.2331853706275 10.1452743610972 9.99978164412572 10.0625100867233 9.57586694608905 9.69270033151174 9.28848309266367 9.8356674156955 9.4219549008438 9.87340406068754 9.63512732664048 9.35177096608935 9.89843818492432 0.143376091709850 0.135662388424432 0.141737030293691 0.146677448826038 0.132814993191512 0.143917960754404 0.139901884468799 0.141031593417433 0.143412948313067 0.147668612545440 0.140528879466413 0.141622717743263 0.150649501257167 0.140281190336605 0.138173707913160 0.137593424291621 0.145333462763432 0.136132478790380 0.143251212090392 1 1|0 -|/ 28807938 28808791 28808394.6 28807819 28809678 - gene protein_coding_gene FALSE TRUE AT1G76730.1 5-formyltetrahydrofolate cyclo-ligase family protein similar to hypothetical protein LOC509897 [Bos taurus] (GB:NP_001039507.1); similar to Os12g0168000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066251.1); contains InterPro domain 5-formyltetrahydrofolate cyclo-ligase; (InterPro:IPR002698) -0.40314140472844 -4.32681407735966 0.00123134210843298 1 4.63765396224753 19.5921488347321 -0.40314140472844 0.075852516445278
AT4G26100_at 6.57546670859371 6.79548103871283 5.78687883179156 5.81730495212626 6.69838248216995 6.09919058298561 7.19147164248007 7.15352890877872 6.79043786480456 6.88603328987195 7.03139995987134 7.20523461741326 6.69347856032921 6.8730799701837 6.87290973006323 6.71463967724392 6.00734685102533 6.90471763495286 6.93317127927626 0.218004210228166 0.221610357037489 0.224363065863708 0.225531594429503 0.222845385382684 0.222774091511608 0.217758492904612 0.219204329536050 0.226057106528365 0.226283383451833 0.224231416475880 0.218015451420084 0.21886268317925 0.227298387126343 0.217758492904612 0.217758492904612 0.234418008776276 0.228607680075708 0.217758492904612 4 4|0 -|/ 13227901 13228812 13228241.3 13227459 13230806 - gene protein_coding_gene FALSE TRUE AT4G26100.1 CK1 (casein kinase 1-like protein 1); casein kinase I/ kinase Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization. Identical to Casein kinase I isoform delta-like (EC 2.7.11.1) (CKI-delta) [Arabidopsis Thaliana] (GB:P42158;GB:Q9SZI1); similar to CKL12 (Casein Kinase I-like 12), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G57015.1); similar to casein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72710.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81302.1); similar to casein kinase I-like protein; similar to the rat delta isoform of casein kinase I, Swiss-Prot Accession Number Q06486 (GB:AAA50233.1); similar to casein kinase I-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92346.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.455288899277611 -4.32576570757549 0.00123348400055889 1 4.63615228025516 13.3435789866813 -0.455288899277611 0.110782377808909
AT1G15000_at 4.68623517318909 4.72937551984454 3.34794488978704 3.44618600012149 3.63212043920795 4.13824844243207 3.66279172892971 4.38424233682614 4.03119118793358 4.82205018638462 3.84214549288466 4.5102533390825 4.73117021492243 4.23801503344029 5.30865646408751 4.07449745031641 4.2962826563457 4.35136595883583 5.43437785216706 0.215752047604562 0.217362694984396 0.236578683275498 0.223105892344017 0.220309862627405 0.222322980295342 0.217006448827661 0.207947075836851 0.214388146058903 0.218631622429177 0.209981379917880 0.207947075836851 0.229879993466929 0.211560834284794 0.223043121371006 0.217044377705045 0.211238351382746 0.207947075836851 0.218768808877839 1 1 + 5169350 5169911 5169595.545 5168591 5170061 + gene protein_coding_gene FALSE TRUE AT1G15000.1 SCPL50 (serine carboxypeptidase-like 50); serine carboxypeptidase similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to carboxypeptidase, vitellogenic-like [Xenopus tropicalis] (GB:NP_001016807.1); similar to Os01g0215100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042394.1); similar to Os05g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056442.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.534013831366286 -4.32529000752583 0.00123445717568428 1 4.63547083045181 8.59418710049284 -0.534013831366286 0.153635991066150
AT4G18170_at 3.77592913706888 3.84186407338648 2.25823060137701 2.31723804115869 2.60602169337479 2.70468199328092 2.15492581289423 2.37789406053497 2.70189855520470 2.01550042184732 2.44901053000667 1.98766401780417 1.84149880903411 2.39315836695984 2.35319086738266 1.78412423550993 2.07538755957661 1.95922210513519 2.11880643649467 0.223447140159561 0.230043628336551 0.210307142150143 0.214116226832078 0.207710668023986 0.218871094733574 0.209656857096746 0.207607316714361 0.207029399721544 0.211499126168940 0.208528765175764 0.209722841035610 0.210102241685279 0.211242971967871 0.213963935822581 0.207029399721544 0.210123014009861 0.213487222621912 0.219978873358822 4 4 + 10062372 10062654 10062512.182 10061384 10062852 + gene protein_coding_gene FALSE TRUE AT4G18170.1 WRKY28 (WRKY DNA-binding protein 28); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 28 (WRKY DNA-binding protein 28) (WRKY28) [Arabidopsis Thaliana] (GB:Q8VWJ2;GB:O49720); similar to WRKY8 (WRKY DNA-binding protein 8), transcription factor [Arabidopsis thaliana] (TAIR:AT5G46350.1); similar to WRKY transcription factor [Populus tremula x Populus alba] (GB:ABK41486.1); similar to Os01g0626400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043628.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.369719132548020 -4.32523098337502 0.00123457798187716 1 4.63538627463893 4.94666927627202 -0.369719132548020 0.0448869199036273
AT1G73200_at 6.16077770221862 6.24529356180433 5.65040329597061 5.64409946638255 5.8259099111807 5.31443311100697 5.72240036432935 5.74356629282742 6.16254372739697 6.08867756807934 6.06519419292343 5.49965582769895 5.66236119429595 5.39342085281492 6.14784175813746 5.39383551420643 4.65019516442731 5.76542940539308 5.92025425141136 0.203356028339471 0.206171516629331 0.212154823860556 0.203356028339471 0.211470935509953 0.226149557885905 0.209456291018651 0.206745008092820 0.216113726000419 0.208248370586341 0.208853567943456 0.203356028339471 0.206423594868221 0.208501562085605 0.206614411120964 0.211537183649406 0.220833038476435 0.219314411266791 0.203356028339471 1 1 - 27527279 27527669 27527490.455 27527115 27530379 - gene protein_coding_gene FALSE TRUE AT1G73200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17820.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23057.1); similar to Os02g0827500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048594.1); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.422107405525875 -4.32386740184349 0.00123737230862728 1 4.63343270212443 11.6030605903983 -0.422107405525875 0.0897950588781957
AT2G36480_at 6.0104761798722 6.27090277654949 5.59670749783918 5.69860149821584 5.48042368191308 5.64254712714704 6.01052571012749 6.22779865927944 5.99995891114074 5.95889324682302 6.10417581619244 5.9885335781532 5.66386641844325 6.17400170698959 5.27730469587711 5.69420209255442 5.6549319072128 5.74706340570674 6.1834548826122 0.206348636209814 0.205878466450275 0.204430065841289 0.202567008529597 0.206444309775082 0.209691856488982 0.202567008529597 0.20933904380431 0.216159938498304 0.205802119211513 0.205863286120069 0.202567008529597 0.205001520369695 0.212979118864794 0.205976444754852 0.202567008529597 0.219133173970517 0.204188956995499 0.207839444415377 2 2 - 15310369 15310880 15310569.818 15309883 15313353 - gene protein_coding_gene FALSE TRUE AT2G36480.1 zinc finger (C2H2-type) family protein similar to pre-mRNA cleavage complex-related [Arabidopsis thaliana] (TAIR:AT4G04885.1); similar to putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa (japonica cultivar-group)] (GB:BAD46662.1); similar to Os09g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063953.1); contains InterPro domain ENTH/VHS; (InterPro:IPR008942); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.392390803864581 -4.32371549443632 0.00123768401558986 1 4.63321504928423 11.7849707077846 -0.392390803864581 0.0674016137375599
AT3G13380_at 4.27840968979941 4.47238977086389 4.49119582804119 5.30992675518717 3.41116477242363 3.4758450063715 2.01369796506952 1.90996901123313 2.56944509439843 1.82388674478296 1.81108597141492 2.11404504519074 1.74807525331065 2.28506441383633 1.96169250397286 2.00311769880180 2.45521011983210 2.10271946257742 1.67079571211183 0.263860213239958 0.265296243166097 0.260961007926774 0.270258472213668 0.248132612000569 0.2543737927362 0.260766033881680 0.252579988497591 0.253693595114644 0.250820443931380 0.247394345148278 0.247394345148278 0.247394345148278 0.252517261677630 0.252073659292848 0.247394345148278 0.248683907207354 0.247838378085337 0.250456255079779 3 3 + 4350153 4350636 4350371.364 4346564 4350930 + gene protein_coding_gene FALSE TRUE AT3G13380.1 BRL3 (BRI1-LIKE 3); protein binding / protein kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 3 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) (BRL3) [Arabidopsis Thaliana] (GB:Q9LJF3); similar to BRL1 (BRI 1 LIKE), kinase [Arabidopsis thaliana] (TAIR:AT1G55610.1); similar to BRI1 (BRASSINOSTEROID INSENSITIVE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G39400.1); similar to BRL2 (BRI1-LIKE 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G01950.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36390.1); similar to putative leucine rich repeat-type serine/threonine receptor-like kinase [Daucus carota] (GB:BAD16810.1); similar to hypothetical protein [Solanum lycopersicum] (GB:CAC36401.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.521083469725207 4.3237114128962 0.00123769239185573 1 4.63320920120483 5.71107592939777 0.521083469725207 0.147136346043587
AT4G32770_at 7.58745511450428 7.85515502824767 7.86704358440885 8.1735807959345 7.59455302015634 7.36820680585027 9.65150541262092 9.79004795792884 8.87318437360912 9.48538359923974 9.31840830960282 9.1629692606678 9.34184303022187 9.45798411686208 8.93197914734143 9.7683102924122 9.20578112534352 9.32012066633744 9.15460681102893 0.144412196694316 0.140341738789665 0.141244030494428 0.135540897003525 0.148827450923228 0.153293075829769 0.134242040249661 0.138234531146520 0.141301844424071 0.139628098717578 0.138099952015970 0.134590799926127 0.138592014950562 0.139551257862087 0.135799284179131 0.138467372184312 0.143472769495061 0.140864456064810 0.139489686384111 4 4 + 15806984 15807771 15807521.182 15804919 15807987 + gene protein_coding_gene FALSE TRUE AT4G32770.1 VTE1 (VITAMIN E DEFICIENT 1) Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading. Identical to Tocopherol cyclase, chloroplast precursor (Vitamin E pathway gene 1 protein) (Sucrose export defective 1) (VTE1) [Arabidopsis Thaliana] (GB:Q94FY7;GB:O65524); similar to tocopherol cyclase [Helianthus annuus] (GB:ABB52813.1); similar to tocopherol cyclase [Helianthus annuus] (GB:ABB52812.1); similar to tocopherol cyclase [Eucalyptus gunnii] (GB:AAP97931.1) -0.41391429721594 -4.32362157498772 0.00123787677509533 1 4.63308047969827 17.4781848424021 -0.41391429721594 0.0840794506110443
AT4G31390_at 7.48741110987163 7.65185052025404 7.39161507163687 7.6759959790118 7.34814340851559 6.47538243094673 8.97891661574693 8.58747372044592 6.88154525140107 6.84203249099775 6.3833354812158 6.83881753126032 6.6023871632497 6.83411373153975 5.92169899715891 7.60087927609492 6.62983116728461 6.24481389808137 6.77508143938781 0.272123408398921 0.280147741544725 0.282629281897279 0.272997788513699 0.270126600264414 0.279366339181093 0.297206060868971 0.288175259047705 0.295775851644632 0.276588272431402 0.274506480878586 0.271227152557958 0.277180955676703 0.274896452663436 0.282895342812651 0.270126600264414 0.278745554942206 0.28103006737248 0.283929681654048 4 4 + 15235037 15236766 15235641.4 15233080 15237115 + gene protein_coding_gene FALSE TRUE AT4G31390.1|AT4G31390.2 ABC1 family protein|ATP binding / protein kinase similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to Os11g0216300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067509.1); similar to ABC1 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92061.1); similar to Predicted unusual protein kinase (ISS) [Ostreococcus tauri] (GB:CAL50461.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.577265253622545 -4.32353250528587 0.00123805961007416 1 4.63295285761125 14.4320341318860 -0.577265253622545 0.175020824436360
AT4G36650_at 3.65527927819089 4.70616484090892 4.37876908300938 4.54507362244868 4.92024696857606 5.00333996611144 3.58265447857314 3.14758875547805 3.14959527555414 2.84427360984147 2.9887396188241 3.15770261590146 3.48868814006069 3.41340722582908 3.23731920891953 3.31193286476522 3.31456048890063 3.63238752539693 3.00240700873803 0.203610505181657 0.188633655459950 0.195233294019969 0.196083094873771 0.194231843228049 0.204011630940970 0.201606714926727 0.191379520331754 0.209676101000532 0.188825389451762 0.191180811955036 0.187543725464264 0.198077380099068 0.187893255127924 0.194198666695828 0.193716983929101 0.196206971774527 0.201496163468554 0.200586500330815 4 4 - 17283337 17283832 17283582.182 17283137 17285604 - gene protein_coding_gene FALSE TRUE AT4G36650.1|AT4G36650.2 transcription factor IIB (TFIIB) family protein similar to TFIIB (TRANSCRIPTION FACTOR II B), RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT2G41630.1); similar to BAC19.3 [Lycopersicon esculentum] (GB:AAG01118.1); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.629134575722732 4.3220905631511 0.00124102344972568 1 4.63088661649267 7.40081504538836 0.629134575722732 0.199441599360605
AT1G69330_at 2.62296883503354 2.93570594414682 2.86436638433313 2.85845647957424 3.45593980295172 2.95180799417523 3.21664282338977 3.25382774972515 3.12313712424259 2.87416338198325 3.74349499060869 3.93805502478892 3.83388238298489 3.89233051064823 3.95198804116019 3.57126796364775 3.74133362785639 3.73665645804831 2.83178466900458 0.221100462917812 0.215940366223385 0.221282293298617 0.212019961237623 0.216654762423880 0.214462969345108 0.217518575063199 0.212019961237623 0.219032834121275 0.215079569860995 0.214493668302099 0.213828879245617 0.215117096879700 0.215953975801901 0.215493547273194 0.213619472560691 0.217986002334688 0.214108887245085 0.221547985699904 1 1 - 26067854 26068368 26068069.182 26067479 26069168 - gene protein_coding_gene FALSE TRUE AT1G69330.1 zinc finger (C3HC4-type RING finger) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29270.2); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.441727030204604 4.31979242652974 0.00124576252593246 1 4.62759279438148 6.3920417600219 0.441727030204604 0.102872377399395
AT1G11280_at 6.22426696274413 6.23860019706214 5.22859270069298 5.61313116880635 5.39598684860845 5.42850460543867 5.93724075551208 6.3778771240849 5.22516956993375 5.77897315894482 5.63220858044077 6.3301987545722 5.90880518798613 6.14362130675954 5.67603353852098 5.6533265136559 5.32713152715379 4.9849986889499 6.41824818994626 0.236410976714936 0.233744340692571 0.230677591817796 0.237208116271844 0.230523110808067 0.249493052975973 0.230523110808067 0.237433795447777 0.245024646786518 0.234790989107945 0.234346778414636 0.234953503474372 0.234188957032047 0.236128377061960 0.237934496784634 0.230723097637456 0.238436390886722 0.240238471577387 0.238368096644763 1 1|0 -|/ 3787495 3787917 3787658.1 3787334 3790876 - gene protein_coding_gene FALSE TRUE AT1G11280.1|AT1G11280.2|AT1G11280.3|AT1G11280.4 S-locus protein kinase, putative|carbohydrate binding / kinase similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.439182778158786 -4.31788021569306 0.00124972021719101 1 4.62485145640847 11.5627771213003 -0.439182778158786 0.101394836249782
AT3G59280_at 8.4339988309886 8.83482689725759 9.00717203136559 9.0995596397595 9.21513196024649 9.07160459637102 8.85257058734225 9.03303184475354 7.76097761099097 8.20632760048717 8.46571202445453 8.52915818030888 8.5929183555283 8.43704850809726 8.58651186217953 8.8540695183416 8.45397870928386 8.42396262714176 8.13161310878554 0.18843423112466 0.175937712428398 0.183258874999725 0.182767643366694 0.181828805140474 0.183767573779387 0.187374759264795 0.177513370656631 0.191115382575004 0.184755249868873 0.192062029155999 0.178456753852635 0.197177704742622 0.187817718458735 0.185939261655421 0.179165832083291 0.192333043434167 0.182556437386427 0.180790341867358 3 0|3 /|- 21920247 21920888 21920513.625 21919890 21921699 - gene protein_coding_gene FALSE TRUE AT3G59280.1 TXR1 (THAXTOMIN A RESISTANT 1) mutant exhibited resistance to growth on media containing thaxtomin due to a difference in the rate of uptake of the toxin.We proposed that TXR1 is a component of, or regulator of, a dispensable transport mechanism. similar to signaling molecule-related [Arabidopsis thaliana] (TAIR:AT5G61880.2); similar to magmas-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87219.1); similar to Os10g0479600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064869.1); contains InterPro domain Protein Transporter, Pam16; (InterPro:IPR005341) 0.409853608297950 4.3168469471487 0.00125186424552281 1 4.62336992221777 17.2314334218047 0.409853608297950 0.0816049498850336
AT3G53720_at 8.26808648730396 8.38542544697572 7.70691528963517 7.71888725254724 7.91465379174206 7.63455354330974 7.41495261764543 7.60218548820567 7.81928562837454 8.16624991265515 7.21654325701542 7.67097727899965 7.43962038581353 7.44027908660227 7.25143286427997 7.8978212132179 7.77973139876459 7.41218277820425 8.34483635988044 0.175615785246168 0.179169805107354 0.188131600132643 0.179960249650248 0.177720838801871 0.187247928834472 0.178325673067525 0.176743205588469 0.195880283835169 0.199678518651150 0.17939840436358 0.17958419505413 0.181940577819875 0.182998681432670 0.195063453014433 0.177207578398701 0.181001432763201 0.192113277241215 0.181488725259935 3 3 - 19916896 19917436 19917142.818 19916656 19921090 - gene protein_coding_gene FALSE TRUE AT3G53720.1 ATCHX20 (CATION/H+ EXCHANGER 20); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX18 (cation/hydrogen exchanger 18), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G41610.1); similar to ATCHX19 (CATION/H+ EXCHANGER 19), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G17630.1); similar to ATCHX17 (CATION/H+ EXCHANGER 17), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT4G23700.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABD32192.1); similar to cation/hydrogen exchanger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99860.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32190.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.385230237415993 -4.31539522094914 0.00125488308307873 1 4.62128810014189 15.6425562395867 -0.385230237415993 0.0617744690036715
AT4G19200_at 11.0184150114440 11.0698082227321 10.9814498627372 11.1049298974038 11.2728822743407 11.2726786072278 10.6712847262454 10.9545951879287 9.58994658562219 9.73525452679991 9.94644964381524 9.83222995017176 10.4115676734542 9.99310967105477 9.81251441795577 10.2352979477414 10.5753110765179 9.96491748674972 9.38846522627063 0.0878114003816336 0.0894324938404815 0.0953971206613381 0.0940988541937333 0.0894032984547253 0.0927089156893794 0.0904747217649742 0.0895279895484464 0.105149135732470 0.0951240733189742 0.094434643183041 0.0902297731730438 0.0885660028645938 0.102889859366205 0.0883016971055661 0.0874265487479151 0.0939201685094944 0.0925062303535624 0.0920904588722573 4 4|0 +|/ 10499357 10500259 10499948.8 10498887 10500733 + gene protein_coding_gene FALSE TRUE AT4G19200.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G45350.2); similar to Os05g0119300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054483.1); similar to hypothetical protein [Solanum lycopersicum] (GB:BAD95795.1); contains InterPro domain XYPPX repeat; (InterPro:IPR006031) 0.377330996937448 4.31505238211699 0.00125559712236714 1 4.62079640884515 20.8770788969225 0.377330996937448 0.0542170734259028
AT1G34760_at 6.57367890578351 6.72484045451146 5.12402892295635 5.6286477082373 6.0979213286372 6.57006138137756 6.1003748360866 6.26987685386985 7.0434754434587 6.7955945045223 6.53192290712541 7.05235145617815 6.76256485107035 6.50160397946423 6.65716872129918 6.65201746498535 5.89939785607015 5.53170995906708 6.70137561525182 0.206760712030611 0.199880541587773 0.208535178518684 0.210126750450588 0.196777345460641 0.200717810031712 0.194552006008917 0.198679163868027 0.203753284738641 0.199424034445384 0.20242680663805 0.196761466914779 0.196403237081418 0.204843909583075 0.202123185894635 0.203655820256982 0.213871027435773 0.215393047993486 0.198996101605213 1 1 - 12744208 12744976 12744585.545 12743799 12745626 - gene protein_coding_gene FALSE TRUE AT1G34760.1|AT1G34760.2 GRF11 (General regulatory factor 11); amino acid binding / protein phosphorylated amino acid binding|GRF11 (General regulatory factor 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. Identical to 14-3-3-like protein GF14 omicron (General regulatory factor 11) (GRF11) [Arabidopsis Thaliana] (GB:Q9S9Z8); similar to GRF10 (GENERAL REGULATORY FACTOR 10), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G22300.2); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308)|Identical to 14-3-3-like protein GF14 omicron (General regulatory factor 11) (GRF11) [Arabidopsis Thaliana] (GB:Q9S9Z8); similar to GRF10 (GENERAL REGULATORY FACTOR 10), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G22300.1); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.480125482798766 -4.31314477515857 0.00125957792332601 1 4.6180602198867 12.7838824675084 -0.480125482798766 0.125883095161586
AT1G80920_at 12.4090280088030 12.6295116611411 12.9518907775787 12.9319031753320 13.2687917171944 12.9665198184392 12.3153352160363 12.322995702617 12.2369873101589 12.6142552174346 12.7363087834337 12.1896646249143 12.5814619429198 12.7288593508291 11.8244155620352 12.9520169370861 12.9279661734750 12.7933352584748 12.4252925729737 0.085478766644465 0.083359657493964 0.0863691354623311 0.083080416710416 0.0841073205559229 0.0878935126170251 0.0872699106628525 0.0846852187705995 0.0965903851204848 0.0835561110361881 0.0859545905384894 0.0856117350788925 0.0836741350382803 0.0901157542824076 0.087743813043094 0.0837699666227692 0.0935547972679046 0.0907280348379054 0.0835309924722351 1 1 - 30408756 30409415 30409114.364 30408536 30409578 - gene protein_coding_gene FALSE TRUE AT1G80920.1 J8; heat shock protein binding / unfolded protein binding J8 mRNA, nuclear gene encoding plastid protein, complete Identical to Chaperone protein dnaJ 8, chloroplast precursor (AtJ8) (AtDjC8) (ATJ8) [Arabidopsis Thaliana] (GB:Q9SAG8;GB:Q9ZSN1); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72070.1); similar to putative DnaJ protein [Camellia sinensis] (GB:ABC69274.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.388400301971823 4.31230964121081 0.00126132484189197 1 4.61686215612832 25.2331296493102 0.388400301971823 0.0648526893190045
AT3G02690_at 8.40094535742978 8.74765789023625 8.63435590358196 8.49455625765266 9.17723720609728 8.93405474527511 9.5301288004954 9.48002979835715 9.30463017936805 9.2441733426126 8.83582563310139 8.64586831093779 8.80041582519088 8.61619026521746 8.53153863618386 9.200658374641 8.83868169437335 8.82002536208694 9.54462213835297 0.138143898335628 0.130440130233815 0.142190889973047 0.138951714871088 0.131249774679516 0.146453048046314 0.138297139138833 0.134906493564057 0.141902801764232 0.14130885875153 0.133198922820092 0.132053874952513 0.135352047586642 0.138979830934221 0.137928357761328 0.134201088327844 0.145077535439141 0.146413096997176 0.138370938515091 3 3|0 +|/ 580485 581396 580980.6 579593 581618 + gene protein_coding_gene FALSE TRUE AT3G02690.1 integral membrane family protein similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92827.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.403982070436258 -4.3105443776681 0.00126502574481601 1 4.61432938203085 18.0001836113046 -0.403982070436258 0.0776630193687506
AT1G55680_at 9.30070006240256 9.34336890644345 9.60966119030832 9.73816974708625 9.96774878826583 9.85459256564744 9.44326347326967 9.53241537946075 9.103232366938 8.78714764101924 9.37376034464512 9.12557954370864 9.30917824219674 9.33066518153036 8.83502067572452 9.35774305078265 9.46201468318782 9.13776777448516 8.83485523252152 0.109072978488199 0.109072978488199 0.112010620588274 0.111071607650222 0.109632418208691 0.112229303532246 0.112469214687536 0.111779544475001 0.118873599923288 0.112363610576102 0.109257267466820 0.109072978488199 0.112822066937281 0.109072978488199 0.115211978657341 0.109072978488199 0.112540193131603 0.119285001923489 0.112184507008683 1 1|0 -|/ 20808659 20809434 20808926.1 20808258 20811606 - gene protein_coding_gene FALSE TRUE AT1G55680.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G56190.2); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G13340.1); similar to Os08g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062140.1); similar to Os02g0721600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047961.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE85775.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.360330278819612 4.30787420370987 0.00127064543268617 1 4.61049730676577 18.6736789810400 0.360330278819612 0.0342138622416563
AT1G72740_at 7.3409431968167 7.2113723113736 7.17858140393008 6.91300222841735 7.51774942780209 7.06648923492515 7.70117873165487 7.68401770624365 7.92266551427876 7.42439999774656 7.28267247958201 6.94976047434714 7.35282640217957 7.3758130868339 7.30157085433957 7.20834613429722 6.75886108226257 7.42620991367451 7.88258352328132 0.186315937550516 0.190490767770130 0.187968610429688 0.196383765218127 0.189750786191634 0.210613623731597 0.186930760572234 0.195016945626821 0.205055534089003 0.196106522698539 0.187820399490731 0.192959266462390 0.184896938857416 0.185298992053465 0.184745275443920 0.192661294259455 0.194050587184749 0.206194546187727 0.198241568909233 1 1|0 -|/ 27384298 27385619 27384819.125 27383956 27386586 - gene protein_coding_gene FALSE TRUE AT1G72740.1|AT1G72740.2 DNA-binding family protein / histone H1/H5 family protein similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G17520.1); similar to MYB transcription factor MYB107 [Glycine max] (GB:ABH02850.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.425815602208096 -4.3074316649613 0.00127157932899155 1 4.60986209107574 14.8017787294163 -0.425815602208096 0.0933936075254866
AT4G14500_at 8.46433434524324 8.61960669725005 8.15094129798652 8.18377190501606 8.10447445717729 8.17417426687935 8.44257250830353 8.58917800080548 8.7187298315132 8.4140752567555 8.45902209631519 8.43344283534424 8.24151518219679 8.23597029862336 7.8717620200128 8.14666714488627 7.83365419898807 8.27581618901345 8.48471613628988 0.128472916387301 0.133898503923923 0.138336193643738 0.132673963712046 0.131185323374740 0.131025415459746 0.135070230853565 0.134018367357714 0.130414340274667 0.135407721641363 0.13353560655201 0.127798714107909 0.131519030208785 0.146886475946039 0.134664909180827 0.131614765586523 0.131141721408633 0.134517480975646 0.129084465030994 4 4 + 8335826 8336989 8336694.818 8334172 8337269 + gene protein_coding_gene FALSE TRUE AT4G14500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23080.1); similar to putative membrane related protein CP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83004.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.363762450991388 -4.30692043666066 0.00127265907680272 1 4.60912824005049 16.7043341784287 -0.363762450991388 0.0392870624690226
AT2G44230_at 6.1817090786591 6.09406391468624 5.10898210384627 4.71276180075319 6.2549744468697 5.92598850649338 7.3255941825083 7.02869373375923 5.86970964319687 6.28627637855708 6.93043753458392 6.7929820862163 7.14757015142005 6.7967156042547 6.38774121650003 6.67288330899483 6.3305568052386 6.60947725173106 7.15211659525788 0.177165858332772 0.179950546439072 0.183206301490195 0.179585928689062 0.183177780169975 0.182989189133917 0.182023508937299 0.183695335156883 0.195695840537182 0.175113861931319 0.175268696466577 0.181459697554487 0.176777159672143 0.183414087652983 0.182056050762302 0.179494072132672 0.181116809986027 0.182291273059009 0.175113861931319 2 2 + 18294736 18295274 18294924.273 18293601 18295476 + gene protein_coding_gene FALSE TRUE AT2G44230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44260.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE82110.1); contains InterPro domain Protein of unknown function DUF946, plant; (InterPro:IPR009291) -0.442163611857874 -4.30667880478970 0.00127316975332678 1 4.60878137106592 12.6513858212159 -0.442163611857874 0.103984662218017
AT3G53380_at 2.44540444072452 2.17093396895326 1.49559053594845 1.37401823886592 1.85088774874274 1.86957302825076 2.20929067900028 2.45702378490070 2.50928805628685 2.58285602953702 2.95475603640530 3.19278883192791 2.07019783847537 2.42346091557949 2.63155684735877 2.48289801666105 1.92372538383511 2.18463926053374 2.68262671705114 0.185286196154999 0.187267013519548 0.188583020282575 0.204071502170789 0.199728830987638 0.186534926337848 0.187303571865237 0.193370124921096 0.194514681449401 0.189996920721523 0.185286196154999 0.186418449354091 0.185829659337338 0.196202341375327 0.190627630554733 0.188054312432820 0.203718035196508 0.188406859611918 0.185286196154999 3 3 - 19800212 19800719 19800430.727 19800040 19802394 - gene protein_coding_gene FALSE TRUE AT3G53380.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G03140.1); similar to Protein kinase; Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE83261.1); similar to Os05g0125200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054518.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.390866603360315 -4.30652114566472 0.00127350307345691 1 4.60855504215481 4.52138688265938 -0.390866603360315 0.0674324312525645
AT2G22430_at 10.3144346818345 10.2407991297650 10.8849506070607 10.8851421711118 11.4847735892460 10.9034088542844 10.8715630592219 10.4006083191242 10.7795562133953 10.4590892461686 11.2103220422479 10.8087253975540 11.0927025512463 11.0879075119947 10.5689494898177 10.8474358283640 10.8982128714278 11.1275371950762 10.4532169002492 0.0992547861444621 0.0976415539637726 0.0987346609040457 0.0994447837917402 0.0980436480917814 0.111783303074763 0.0987813285157082 0.0970439952971868 0.101484455830174 0.0966126382137644 0.0962196221989736 0.0944840068003333 0.096660064974367 0.100442278146460 0.101558589749453 0.0944587624626724 0.104263784757827 0.102823568781416 0.0964100948363274 2 2 - 9533589 9534212 9533854.818 9533175 9534910 - gene protein_coding_gene FALSE TRUE AT2G22430.1 ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-6 (Homeodomain transcription factor ATHB-6) (HD-ZIP protein ATHB-6) (ATHB-6) [Arabidopsis Thaliana] (GB:P46668;GB:Q9SJZ1;GB:Q9SQ78); similar to ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 13), transcription factor [Arabidopsis thaliana] (TAIR:AT4G40060.1); similar to homeodomain-leucine zipper protein [Brassica napus] (GB:AAR04932.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.486993749483846 4.30639012745135 0.00127378013936891 1 4.60836695480575 21.5077991669079 0.486993749483846 0.130102762521939
AT1G36380_at 7.1791480238158 7.49051750953868 7.44772773516645 7.87650865647522 8.53042860248001 7.86937752004442 7.14505192277645 7.41560629017155 6.77518231945665 6.88277332241692 7.22193935005298 7.13116405445406 7.76105666325598 7.66730011725682 6.91863174006125 7.72191941674892 7.16086547648863 6.71098294401468 6.87948505653831 0.143834893506336 0.144934879555964 0.148204114973010 0.141818185330663 0.140449826470529 0.151591551848730 0.15334052869307 0.140134512101286 0.153734150298608 0.151182511335955 0.140134512101286 0.142844820726326 0.141458711174343 0.147849227205219 0.144407169341805 0.145188486774304 0.140134512101286 0.152193756499647 0.140206465773868 1 0|1 /|+ 13702330 13702447 13702388.444 13702026 13702844 + gene protein_coding_gene FALSE TRUE AT1G36380.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15488.1) 0.532174298060139 4.30600264635517 0.00127459992012540 1 4.60781067795541 14.6855688007731 0.532174298060139 0.153910914234492
AT4G33420_at 0.639884292157447 0.432507715074035 1.09856241115452 0.455021280407390 0.783861603949932 0.531902917777427 0.808651538878745 0.764668723894357 2.63700424026844 0.366939318751475 1.03309427054996 1.03790065655685 0.374675965142131 0.601004697530095 1.07137571266505 0.941433344967404 0.336532561218894 0.472812247588420 2.22895488518944 0.216248226621335 0.212073798557559 0.213683630586647 0.225252035521400 0.215527930692658 0.213850916068543 0.220185770860398 0.211224910233961 0.222367800846940 0.224332939200463 0.216699741598121 0.212973306740688 0.218192326710105 0.214979440280765 0.215416730962073 0.213547921786289 0.214071674656664 0.219815946655821 0.221642753841106 4 4|0 +|/ 16085571 16085918 16085783.9 16084831 16086299 + gene protein_coding_gene FALSE TRUE AT4G33420.1 peroxidase, putative Identical to Peroxidase 47 precursor (EC 1.11.1.7) (Atperox P47) (ATP32) (PER47) [Arabidopsis Thaliana] (GB:Q9SZB9); similar to peroxidase [Arabidopsis thaliana] (TAIR:AT5G51890.1); similar to TPA: class III peroxidase 117 precursor [Oryza sativa (japonica cultivar-group)] (GB:CAH69359.1); similar to Os08g0113000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060836.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.477393406777298 -4.30117152843903 0.00128486746694657 1 4.6008729961279 1.92833414212697 -0.477393406777298 0.125099240201730
AT2G31955_at 7.08768563377948 7.19472706910872 7.57217811713597 7.47056022106469 7.43168024030236 7.3538720634323 7.25799623363222 6.96341095160518 5.9787994092832 6.26030477019789 6.37848263699281 6.71417462719159 6.34648460427168 6.6996819584594 6.16081297925834 6.66091703014088 6.88320508809866 6.7684954386072 6.2009285008746 0.172073277331359 0.165750589682810 0.166520519957492 0.173582857527850 0.168589373017664 0.169248379818594 0.171678250908519 0.170425555444757 0.167880331165571 0.174456182293772 0.169059426544997 0.165763884208455 0.172592687857119 0.169114586138731 0.177074893033852 0.164232647116556 0.169952678157522 0.173971330593960 0.172932119004667 2 2 - 13591757 13593532 13592482.786 13591216 13593777 - gene protein_coding_gene FALSE TRUE AT2G31955.1|AT2G31955.2 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria. Identical to Molybdopterin biosynthesis protein CNX2 (Molybdenum cofactor biosynthesis enzyme CNX2) (CNX2) [Arabidopsis Thaliana] (GB:Q39055); similar to Os02g0258900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046477.1); similar to putative molybdenum cofactor biosynthesis protein A [Oryza sativa (japonica cultivar-group)] (GB:BAD20064.1); contains InterPro domain MoaA/nifB/pqqE; (InterPro:IPR000385); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Molybdenum cofactor biosynthesis protein A; (InterPro:IPR013483); contains InterPro domain Molybdenum cofactor synthesis C-terminal; (InterPro:IPR010505); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) 0.38048596185572 4.30045815699131 0.00128639091419922 1 4.59984824948619 13.6531184940057 0.38048596185572 0.0585883117303414
AT3G45600_at 9.92549095928042 10.1105496157636 9.97124482433257 9.92729143711917 10.5601155575091 10.2961628751778 10.2906907114006 10.1363030019734 8.01069557941641 9.5139952273781 9.65529575998117 9.44121545421893 9.99798628661305 9.81950487112428 9.13336408004466 9.7631032442855 9.94986111519465 9.35379589507052 9.30545978157905 0.122832723293320 0.122225198067436 0.117577376096404 0.117577376096404 0.128091633404799 0.123200754082737 0.125180972778519 0.122779930517756 0.129527479775390 0.122080104535823 0.123608883750315 0.118447675134209 0.121569464675320 0.126504296633798 0.126945325856265 0.121435368740741 0.129003926484352 0.122074810051015 0.124942708022678 3 3|0 -|/ 16744958 16746550 16745579.556 16744740 16746936 - gene protein_coding_gene FALSE TRUE AT3G45600.1 TET3 (TETRASPANIN3) Member of TETRASPANIN family similar to TET4 (TETRASPANIN4) [Arabidopsis thaliana] (TAIR:AT5G60220.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE85915.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.384413705144451 4.29953817594173 0.00128835838148564 1 4.59852659140475 19.4435558067068 0.384413705144451 0.0623201513203726
AT4G26160_at 5.54185418010064 5.54739677095096 6.10936675806367 6.34723271366217 6.46873612865783 5.72019988303849 5.38133004047704 5.21846442596155 3.79718064881995 4.98248505277626 4.62190235966434 4.47759083212118 4.60034788019707 4.65169252209512 4.32095693441785 5.36939425896671 5.17461614071052 5.36166573517587 4.89065646048481 0.202641075054701 0.192766449595921 0.202606979168808 0.210176201960048 0.192709240672704 0.207645310514186 0.193217643725681 0.192552951321320 0.219656898604362 0.192946679608002 0.203469219587573 0.194928968582998 0.198251360754775 0.200249955407444 0.204908888244174 0.198637610580557 0.199448737579063 0.199542617942662 0.198771464250532 4 4|0 +|/ 13255372 13256330 13255749 13255260 13256769 + gene protein_coding_gene FALSE TRUE AT4G26160.1 thioredoxin family protein Identical to Thioredoxin-like 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8LEK4;GB:Q9SZI7;GB:Q9XFI0); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G29670.1); similar to Os05g0200100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054880.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE79237.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.502309647687286 4.29939977495547 0.00128865463775228 1 4.59832775084455 10.4813450560868 0.502309647687286 0.138815586077906
AT4G37240_at 2.27084457075019 2.68849126445396 1.80662668981014 1.81473863423733 2.38871829741599 1.73761234335621 4.38485880638265 4.66857068832867 5.67895656455756 4.64638382285173 7.48877619409241 6.49856391847739 5.637260654675 6.60633828336207 6.16541262911786 5.50233738199754 3.55297712961314 5.53875402702408 5.65365267103246 0.330484347668401 0.325352873229621 0.331406052961844 0.329574248274449 0.333368297064254 0.325343990449902 0.318538881296022 0.318538881296022 0.332313380521067 0.32386848188642 0.323213863688016 0.320359194170304 0.326089315919893 0.329047376814885 0.322442540802391 0.318538881296022 0.325072252331671 0.318538881296022 0.318843513588842 4 4 + 17524559 17524872 17524721.091 17524455 17525153 + gene protein_coding_gene FALSE TRUE AT4G37240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23690.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAB41200.1); similar to Os03g0740200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051217.1); similar to Os09g0493000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063543.1) -0.5093979167298 -4.29898839865323 0.00128953563652751 1 4.59773670885304 8.32012443522965 -0.5093979167298 0.142591788214239
AT4G00050_at 5.71765630908317 6.02934589387767 5.65011495639762 5.93023982811744 6.18409852279231 6.4285810419831 8.0465463565638 8.45045560333654 5.4996706083613 7.09524541939487 6.6342318318218 6.63994598683142 6.74285235804408 6.73208257347884 6.71639280853621 7.45382286707656 6.64378958778562 6.65255095176554 7.39714903643504 0.19265496730239 0.192769689745258 0.208689875156085 0.209507789006845 0.188864125006995 0.19737933797226 0.191286004742859 0.196756576839623 0.219375739544505 0.192541275717694 0.197095374619141 0.189946564037538 0.196847503550338 0.194322230849676 0.187951101677651 0.187951101677651 0.196901121930725 0.197478267243317 0.189277746211409 4 4|0 +|/ 18373 19605 19382.778 17792 20066 + gene protein_coding_gene FALSE TRUE AT4G00050.1 UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G61270.1); similar to Os10g0556200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065353.1); similar to putative BP-5 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81566.1); similar to Os01g0286100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042775.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.449902760394454 -4.2987279879152 0.00129009365512540 1 4.59736255159579 13.2751199683846 -0.449902760394454 0.109248728452555
AT2G02360_at 8.61727947584527 8.67976150971479 9.0740697414053 8.9637339195957 9.2535820898488 8.77582960469675 8.28477297357254 8.23095952089797 7.92986815002298 7.54278074931838 7.87275968930516 7.61549904884748 8.11886433634377 8.2133198861589 7.37745926107371 8.1700905538137 8.03326234620444 8.19836383238245 7.58236836044791 0.174471509026490 0.183085685718564 0.178604216179686 0.170706928574194 0.184908087893484 0.176112202154048 0.178493530109564 0.181657049851858 0.189219221051241 0.170543234907430 0.177172567013398 0.172692707484044 0.173830354538979 0.177319965038999 0.186264793124606 0.175110027357753 0.190496054884054 0.181743988168257 0.178969409533845 2 2 - 619701 620479 620060.909 619405 620767 - gene protein_coding_gene FALSE TRUE AT2G02360.1 ATPP2-B10 (Phloem protein 2-B10) similar to ATPP2-B8 (Phloem protein 2-B8) [Arabidopsis thaliana] (TAIR:AT2G02340.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96399.2); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.414278542441056 4.29869233586713 0.00129017007144184 1 4.59731132601217 16.5524776657118 0.414278542441056 0.0860451252314206
AT2G02220_at 6.5943379240554 6.84465832582075 5.84629860228431 6.22185138795076 6.78473045879185 6.49962535043209 4.27467578718594 5.06921824012813 5.29867437015814 4.29075412871654 5.39443661567032 5.10069950507962 4.87590037755467 5.90893461902487 4.60204990294272 5.04523692326233 5.22928427464131 5.22506500529834 4.52822930402072 0.220770706735749 0.218739072144331 0.225341641485515 0.226150327931587 0.218739072144331 0.228195973144025 0.220971247083863 0.225072705258671 0.224926637803368 0.231860738130811 0.221321973897931 0.223848718450076 0.219601812416077 0.224937589266342 0.218739072144331 0.222738094578431 0.231893512608139 0.232296085823377 0.228416124478069 2 2 - 584394 584940 584642.636 583977 587123 - gene protein_coding_gene FALSE TRUE AT2G02220.1 ATPSKR1 (PHYTOSULFOKIN RECEPTOR 1); ATP binding / peptide receptor/ protein serine/threonine kinase Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). Identical to Putative phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) (PSKR) [Arabidopsis Thaliana] (GB:Q9ZVR7;GB:Q8S8L2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72300.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53890.1); similar to putative phytosulfokine receptor precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD23737.1); similar to Phytosulfokine receptor precursor (Phytosulfokine LRR receptor kinase) (GB:Q8LPB4); similar to H0322F07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67764.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.554609424601504 4.29767561141659 0.00129235130652114 1 4.59585039032317 10.9562179281975 0.554609424601504 0.165652533506015
AT3G06020_at 2.20749556290184 2.283368364607 1.72656042567572 1.86559278266797 1.78927560221672 2.28931349558172 2.46215889935002 2.9124602612009 2.58220380562848 2.89365577789458 2.88742527519934 3.2624390420311 2.28116707248410 2.32066755394275 2.96982974304532 2.45221306699507 1.89224860328084 2.99259993251773 3.57870146635074 0.217437292497437 0.210437740385774 0.223137819909995 0.210785497135386 0.216458259918161 0.218618426805881 0.215674353976643 0.209280871432928 0.229291627322723 0.224605449095848 0.213955232290315 0.215237103710334 0.213635693750661 0.211133658328380 0.217005933508465 0.207605298802360 0.218697561713223 0.208755488098421 0.233388717646493 3 3 + 1813578 1814149 1813777.364 1813273 1814175 + gene protein_coding_gene FALSE TRUE AT3G06020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19260.1); similar to hypothetical protein 12 [Plantago major] (GB:CAJ34820.1) -0.467274212958491 -4.29663865078198 0.00129457993300208 1 4.59436020716149 5.01728357568105 -0.467274212958491 0.119632714077442
AT2G35370_at 11.5720989644142 11.5139352092217 11.0842524381616 10.9700317743622 11.2369618178567 10.9593368336574 12.1009712433083 12.1016977423026 11.4803064420315 12.0330460496122 11.7955319375768 12.0297015902484 11.5748811513338 11.5493173504031 12.0999047853187 11.9995441324273 11.4451227656206 11.798871286957 11.8136685530851 0.0820417006043021 0.0826407778028918 0.0849874868754781 0.0827406049006229 0.0821638999654315 0.0833933049098717 0.0822383923039241 0.0831730513619276 0.0929235363100071 0.0836447723476687 0.084492300324761 0.0818837199922003 0.082644691588344 0.0876958395720737 0.0841285683127984 0.0818837199922003 0.0856183078348938 0.0877535963167522 0.0830038092341687 2 2|0 +|/ 14898324 14899036 14898654.375 14898181 14899297 + gene protein_coding_gene FALSE TRUE AT2G35370.1 GDCH (Glycine decarboxylase complex H) Encodes glycine decarboxylase complex H protein. Involved in photorespiration. Identical to Glycine cleavage system H protein 1, mitochondrial precursor (GDCSH) [Arabidopsis Thaliana] (GB:P25855); similar to glycine cleavage system H protein, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT1G32470.1); similar to Glycine cleavage system H protein, mitochondrial precursor (GB:P16048); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Glycine cleavage H-protein; (InterPro:IPR002930); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.374297190196371 -4.29475233026248 0.00129864431987311 1 4.5916489958615 23.2235522811916 -0.374297190196371 0.0529178248132169
AT2G41290_at 5.07873154390127 5.38666482801176 5.5346776442347 5.90665940423402 6.56936091064557 6.29061331928155 8.35435968178504 8.33795225528405 6.26480358258789 7.25691320447648 6.7876789440149 6.97500770206426 7.10335658806075 6.76409841803575 6.36269031979157 7.13881140973712 7.37411720409495 6.62507753718815 7.58463974865457 0.222138157622202 0.204892863181308 0.204494184223778 0.206620687748781 0.20830279190082 0.227800611992767 0.216595918849739 0.213750828529390 0.228662552900641 0.214047539071201 0.203410321800914 0.203410321800914 0.205311115236752 0.227583311804501 0.204795877017582 0.206813059968825 0.208766175848316 0.204994420365417 0.208115508874694 2 2 - 17217683 17218117 17217913.545 17217533 17220037 - gene protein_coding_gene FALSE TRUE AT2G41290.1 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57030.1); similar to Strictosidine synthase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95779.2); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.429098335423059 -4.29276003596414 0.00130295155447451 1 4.58878485193569 13.3957809203954 -0.429098335423059 0.0965332917875837
AT2G38310_at 8.85979029865354 9.16003088294166 7.62583855634398 7.78714939693774 8.38356678462113 8.1872849598006 6.87349137160186 7.39478505476058 8.86850944557908 8.22919366010862 8.35732414669286 8.01183632351677 6.77755595692704 7.98622658589482 7.64254800793888 8.45825699446216 6.15830123142827 7.44806564148465 8.22192439699521 0.148415433949385 0.152633951288415 0.142010042763825 0.142194193970626 0.142666175891621 0.151932336150134 0.152749052313378 0.141811617291457 0.156714898536705 0.146874178192177 0.148363942860380 0.142780913316617 0.166823735446061 0.144920186331652 0.144786771752270 0.140028066808478 0.189218993331621 0.142848889664125 0.149355463328415 2 2 + 16057450 16057875 16057658.7 16057141 16058246 + gene protein_coding_gene FALSE TRUE AT2G38310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05440.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84653.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.455462975373999 -4.29208312033433 0.00130441841218236 1 4.58781156662115 16.0564372608430 -0.455462975373999 0.113008704356081
AT2G01690_at 4.9164603653893 4.52018156304083 5.05947889936771 5.05629301950555 5.4280584362965 4.62062733338504 5.49086438933168 5.00933673958912 4.47177863858281 4.63735164796359 5.60594859398147 5.51401380437016 5.80758797241056 5.7486156473969 5.42708526939189 5.92299090223058 5.68301640022114 5.30545601708256 4.48477900875185 0.206324936009350 0.193752023943220 0.200723715226331 0.198248505608633 0.209336273785825 0.201827293759291 0.197363780376922 0.196926234597653 0.220212336176886 0.202165627866479 0.194137721182810 0.194804770332601 0.196354982012398 0.207184708891493 0.200031387796014 0.197256389667327 0.216645730678969 0.208013513294750 0.203075195566677 2 2|0 -|/ 309144 310032 309549.2 308701 313804 - gene protein_coding_gene FALSE TRUE AT2G01690.1|AT2G01690.2 binding| similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.1); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05340.1); similar to Os03g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049425.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357)|similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05340.1); similar to Os03g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049425.1); contains InterPro domain HEAT; (InterPro:IPR000357) 0.576219942626937 4.29190318452932 0.00130480861895799 1 4.58755283837328 10.0917338053974 0.576219942626937 0.176554851442163
AT3G43230_at 9.0920853873966 9.15458749605944 9.4837371136731 9.53765640799737 9.8524165533038 9.63440328454105 8.82651248120392 8.77720648388038 8.82721144497584 8.79953279571275 9.0240043609832 8.5352527849258 9.05750311954852 8.84103717236433 8.40468956426136 9.13772303916752 9.12113496149487 8.76970948182658 8.76786635489493 0.101049042088049 0.09956194622803 0.100428401154059 0.101762569685673 0.0999138319836965 0.101869687734167 0.099634817543436 0.101602467372488 0.121149608263874 0.104588756918194 0.102762946344146 0.107810718489436 0.103457814224364 0.107703770521954 0.110695173468159 0.09956194622803 0.108808796440220 0.121658217930897 0.106646652021292 3 3 + 15219805 15220558 15220184.455 15218355 15220813 + gene protein_coding_gene FALSE TRUE AT3G43230.1 zinc finger (FYVE type) family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G29800.2); similar to Os07g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060279.1); similar to putative senescence-associated-like protein [Zea mays] (GB:AAV64197.1); similar to Os07g0272400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059348.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Protein of unknown function DUF500; (InterPro:IPR007461); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.363816828227044 4.29026463325811 0.00130836759129969 1 4.58519654123909 18.1246183222233 0.363816828227044 0.0412344892583620
AT1G75040_at 13.0897186960639 13.2149162884314 13.4598529337193 13.4387401801998 12.4513742781635 12.2549886870167 9.16261511389168 9.15790024598046 10.5672435313531 8.95410595159737 8.18263567567107 9.86525549161533 8.05050466489242 8.61410464977057 8.7762372008164 8.45591223423318 7.75784931329801 8.28279635087202 9.02868711743509 0.158569926820544 0.159802820849473 0.163423278279040 0.160058810554826 0.160919946202367 0.159268138120701 0.164847591637889 0.159635237333735 0.165328749231778 0.158193088099525 0.161442359423422 0.153901361896772 0.165476269218229 0.165360866077519 0.157881595076844 0.158409383118586 0.178159940990032 0.166831398121666 0.154126831739238 1 1 + 28181916 28182366 28182163.091 28181364 28182601 + gene protein_coding_gene FALSE TRUE AT1G75040.1 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. Identical to Pathogenesis-related protein 5 precursor (PR-5) [Arabidopsis Thaliana] (GB:P28493); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.363217257266941 4.28998059509597 0.00130898556176229 1 4.58478804038596 21.036183710154 0.363217257266941 0.0404776730085959
AT3G60940_at 1.76652790346016 1.84832326401985 1.77697675854510 1.91616961702007 1.27632445248416 1.47430686922867 1.34143232855175 1.36123838408484 2.3343550554922 2.23515178242263 1.48314253174712 1.00477887810584 1.07951592997518 1.30914462557817 1.15748021570600 1.43752538515473 1.46707395004299 1.99143518186353 1.82086630132851 0.242587923339884 0.245364070311229 0.244708951409921 0.241688870106164 0.242371808669318 0.253777262749117 0.235344138976159 0.237318492187235 0.242363425535546 0.240551306133308 0.233126186315384 0.242341534323888 0.236919479707641 0.250697498652269 0.249980921411142 0.232996234564118 0.236729160931228 0.253087025709076 0.238292291302072 3 3|0 -|/ 22532599 22533144 22532836.889 22532421 22534675 - gene protein_coding_gene FALSE TRUE AT3G60940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61028.1); similar to Os12g0162900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066226.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96170.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) -0.366149169092865 -4.2887157890527 0.00131174106178 1 4.58296885292943 3.34335568068406 -0.366149169092865 0.0443420116644823
AT2G27720_at 10.0309417510435 10.4885674173989 9.74787092856239 9.7027981578601 10.1436231308188 9.83726118307893 10.2841792429084 10.3763560013918 10.3351128693951 10.3558565028105 10.0097221462896 10.3826255121445 9.72981420827437 9.83767646629922 10.4467657060361 9.3874762322596 9.57200601681404 9.6025766380596 10.1860296038099 0.111236041900426 0.105878495075983 0.107768501951378 0.112136009370843 0.107932757570640 0.106474261005631 0.104627445864559 0.104175697452800 0.118002738244839 0.107610725945972 0.104247818584827 0.101735656288308 0.103115472029632 0.107364303850321 0.104289420626491 0.109635119303240 0.105924815293690 0.113470553110413 0.106860880771258 2 2 + 11825774 11826421 11825995 11825568 11826655 + gene protein_coding_gene FALSE TRUE AT2G27720.1 60S acidic ribosomal protein P2 (RPP2A) Identical to 60S acidic ribosomal protein P2-1 (RPP2A) [Arabidopsis Thaliana] (GB:P51407;GB:Q9ZUX3); similar to 60S acidic ribosomal protein P2 (RPP2B) [Arabidopsis thaliana] (TAIR:AT2G27710.3); similar to 60s acidic ribosomal protein-like protein [Solanum tuberosum] (GB:ABA40434.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.429186439669316 -4.28740033641237 0.00131461334303719 1 4.58107654955788 20.1581576555215 -0.429186439669316 0.0969425911303468
AT1G56440_at 3.72611268622388 3.57129908926830 3.80464375510423 3.49821392130637 3.9572513893739 3.86270351346961 3.38111051150831 3.11052020790259 2.49401843952334 2.29153752953562 2.65565400096496 2.30082194673537 3.01822369074309 2.76727238974657 2.80761661932905 2.63324162032885 3.28845335543607 2.36920866903253 1.99665250579754 0.26180940589146 0.256248814005998 0.260371464742113 0.265473597910034 0.267563878809714 0.265051839029440 0.266748842514151 0.261515080572725 0.256248814005998 0.276551994960241 0.268573513274276 0.256248814005998 0.256248814005998 0.260768229509030 0.256248814005998 0.256248814005998 0.262310197153862 0.256248814005998 0.266714318739755 1 1 - 21143908 21144653 21144261.571 21142195 21145236 - gene protein_coding_gene FALSE TRUE AT1G56440.1 serine/threonine protein phosphatase-related similar to chloroplast outer membrane translocon subunit, putative [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10753.1); similar to Os05g0129900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054548.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.40138394967091 4.2865207580932 0.00131653756832742 1 4.57981110593526 6.10938073168218 0.40138394967091 0.0773972171253983
AT3G07630_at 6.73574204133624 6.93816391260001 7.098357367686 6.59654741444853 7.28530318009606 7.25043400924605 6.32191035984122 6.32546254479885 5.54167761673628 5.4927711816036 5.72262711344769 5.9320965801494 6.24863119060501 5.50547967991024 6.3420896600134 5.81157510739232 5.7469725012377 5.44286283563174 5.38344528278078 0.24654848096356 0.249424773093352 0.247488164383864 0.260740942826607 0.242993414611897 0.259497660741091 0.242993414611897 0.242993414611897 0.252399792482201 0.244476644290833 0.242993414611897 0.242993414611897 0.242993414611897 0.259906822518957 0.248420010524666 0.242993414611897 0.255165667283616 0.259572406489189 0.249254079581883 3 3|0 +|/ 2436365 2437504 2436998 2435451 2437971 + gene protein_coding_gene FALSE TRUE AT3G07630.1|AT3G07630.2 prephenate dehydratase family protein similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G11790.1); similar to Prephenate dehydratase with ACT re (GB:ABE81566.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.424375625699984 4.28619461193423 0.00131725181695258 1 4.57934185028213 12.4773267007176 0.424375625699984 0.0938359006821157
AT2G19190_at 6.76937122831545 6.76657412903412 6.13671644240912 6.08987832570616 3.93195979965097 4.09411443703819 1.58541067508911 1.84123485341571 2.50291091672096 1.92137715105757 2.30773344018199 2.28764383896147 2.03433366093819 1.88325241179462 1.63892841515041 2.48696628387912 2.48541017271386 1.79899208691237 2.14825626437720 0.340912755061154 0.348087663459573 0.326138565992614 0.332351089701706 0.315805707542444 0.308042376642960 0.320192891543687 0.311109766055388 0.312742127170329 0.319232747742955 0.319284875441709 0.308042376642960 0.310322800551043 0.312239943020082 0.312640970870759 0.308820835706506 0.308042376642960 0.321510500727010 0.308042376642960 2 2|0 -|/ 8333154 8333786 8333470 8333131 8337026 - gene protein_coding_gene FALSE TRUE AT2G19190.1 FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1); kinase Receptor-like protein kinase. Involved in early defense signaling. Identical to Senescence-induced receptor-like serine/threonine-protein kinase precursor (FLG22-induced receptor-like kinase 1) (SIRK) [Arabidopsis Thaliana] (GB:O64483); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19230.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19210.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.373539478917722 4.28470386631286 0.00132052166558031 1 4.57719676575408 6.80503531109989 0.373539478917722 0.0530411188324759
AT3G26470_at 4.51926625745571 3.96682594592657 4.94348160896641 5.20006471100912 3.55548073121093 4.03911662653293 1.76700499325883 1.95986289333719 1.91656175225851 1.84221766258652 1.54425109111013 1.32807127645049 1.34636590832664 1.62218972726064 1.79459190716178 1.30181574291592 2.07005544541440 1.50958917865051 2.07741490345313 0.315310084708982 0.294018712152968 0.300924325514516 0.294913228851785 0.295636073857571 0.295454772931406 0.280762326887122 0.276891074341582 0.279282063851389 0.281517515163723 0.283651885180377 0.280547423949037 0.278719317587852 0.277219801232423 0.277894774993825 0.276891074341582 0.280543070441515 0.284915531259207 0.276891074341582 3 3|0 +|/ 9687481 9688047 9687759.1 9687335 9688879 + gene protein_coding_gene FALSE TRUE AT3G26470.1 similar to ADR1-L1 (ADR1-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT4G33300.2); similar to Probable disease resistance protein At4g33300 (GB:Q9SZA7); contains domain GHMP Kinase, C-terminal domain (SSF55060) 0.500257037748599 4.28411139523104 0.00132182356886534 1 4.57634414082750 5.49889516634256 0.500257037748599 0.138673166617107
AT1G56170_at 4.3843620019801 4.75253243816371 4.30092326371978 4.43137266294634 4.19608084824335 4.34458230106244 4.94196734697467 5.34194336858785 4.10076632366744 4.87948049318443 3.50989364781505 4.09661251592937 4.24189408014013 4.30740656728612 3.86335352978444 4.26258696421524 4.53231510989784 3.81212305943797 4.24561098203811 0.219491017858027 0.219149561436741 0.214525529706937 0.214790787205751 0.209861669268560 0.233128588150947 0.224692386509311 0.233836001208602 0.219877938668532 0.214193595949091 0.211451980893615 0.209861669268560 0.213584186127686 0.216240603082805 0.218927132750021 0.209861669268560 0.228249887168827 0.218720364085560 0.214462848965804 1 1 + 21028827 21029334 21029048.727 21028429 21029548 + gene protein_coding_gene FALSE TRUE AT1G56170.1|AT1G56170.2 HAP5B (Heme activator protein (yeast) homolog 5B); DNA binding / transcription factor|HAP5B (Heme activator protein (yeast) homolog 5B) Encodes a protein with similarity to a subunit of the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues Identical to Nuclear transcription factor Y subunit C-2 (AtNF-YC-2) (Transcriptional activator HAP5B) (NFYC2) [Arabidopsis Thaliana] (GB:Q8LCG7;GB:O23636;GB:Q8VY66;GB:Q9SGU4); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.2); similar to putative heme activated protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25492.1); similar to Os02g0170500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046029.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.433653800958494 -4.28337964413116 0.00132343338253502 1 4.57529100103642 8.83016675426474 -0.433653800958494 0.100102814004742
ATCG00210_at 9.83501876567306 10.4746062895811 10.4959595796177 10.8283874632476 9.97514681127548 9.7924285360099 10.4327626689223 10.4548251491844 11.4759709909220 11.7395975738240 10.4985063766855 11.0566056665665 10.4536090965614 10.5437639716899 10.2916169023218 10.8917069479781 10.3640928712121 11.8305885462765 11.8208186557389 0.0826859309463944 0.0798377651075417 0.081195683875795 0.0855974213572005 0.0747879686332217 0.0836457691281898 0.0764854184765912 0.0781085697152015 0.0793529182043206 0.0750775768378835 0.074711688039068 0.0750770700547456 0.0751583480574368 0.0758734900184032 0.0771712035883007 0.074711688039068 0.0796567935565983 0.074711688039068 0.074711688039068 C C + 28091 28152 28116.818 28089 28178 + gene protein_coding_gene FALSE TRUE ATCG00210.1 Identical to Cytochrome b6-f complex subunit 8 (Cytochrome b6-f complex subunit VIII) (Cytochrome b6-f complex subunit petN) (petN) [Arabidopsis Thaliana] (GB:P61039;GB:P12178;GB:P56789); similar to PetN [Acorus calamus] (GB:YP_319758.1); similar to petN [Nymphaea alba] (GB:YP_053148.1); contains InterPro domain PetN; (InterPro:IPR005497) -0.481903531776367 -4.28309972297030 0.00132404973683446 1 4.5748881146106 21.4961954267255 -0.481903531776367 0.128743042152252
AT1G61660_at 7.01459080304479 6.6072873026354 8.1241510987244 7.75017855850035 7.62146277026775 7.23368003974287 8.56491126758981 7.29873508140872 5.49273530515624 7.00265554584165 7.83378630987008 7.35752490838583 7.42799704191703 7.52920271150327 7.18786512126713 7.73616833915465 8.40798826270093 7.04654129958625 6.74149749962802 0.215692784830662 0.22410879497233 0.240994376751806 0.226207479846405 0.226418415860025 0.235381907839619 0.222536609271641 0.226309853866320 0.271988681776232 0.225359126071354 0.223342588328536 0.215692784830662 0.224737430657311 0.241042579947469 0.221268029679113 0.218302960717401 0.239510569358578 0.240059927768338 0.225434208270482 1 1|0 -|/ 22758055 22759095 22758652.8 22757380 22759960 - gene protein_coding_gene FALSE TRUE AT1G61660.1|AT1G61660.2 basic helix-loop-helix (bHLH) family protein similar to ethylene-responsive protein -related [Arabidopsis thaliana] (TAIR:AT3G20640.1); similar to 3063 (GB:AAD21412.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.732287567781003 4.28263951132291 0.00132506372328844 1 4.57422571165708 14.515964798326 0.732287567781003 0.248339724483844
AT1G64050_at 5.12904827535436 5.51159804530439 6.09445776165591 5.3765045971762 6.20958841958582 6.60762729288898 5.77245912530043 5.36284457561529 4.97792623554128 4.50213612606917 5.37541100958939 5.16119034272429 5.33532304933777 5.35801568116766 5.10745260336329 5.33532355597305 5.85888903758792 4.8558579444957 4.90581216178249 0.222518670891505 0.225995605530003 0.224127594140332 0.227647507290800 0.229253744841919 0.235244745739021 0.236701968219015 0.22785462911994 0.227590988305561 0.228639238579864 0.228561572144791 0.227944819853538 0.227265436190486 0.235153757825654 0.232821521957708 0.223598311224447 0.252774364497781 0.230781373691504 0.226072776857531 1 1 + 23768616 23769334 23769008.182 23766028 23769696 + gene protein_coding_gene FALSE TRUE AT1G64050.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD27894.1) 0.565599203832672 4.28246767544169 0.00132544253846529 1 4.5739783720513 10.8048782170239 0.565599203832672 0.172014951458992
AT1G26580_at 8.1136260151348 7.86674804623397 8.40753000075415 8.41615087873814 8.80810696059593 8.35402007273169 7.2882779530732 6.8305871687384 7.919985045399 7.9609643002775 7.87498616685604 7.44745066723573 7.7858584513717 7.91482811581663 7.97790332797636 8.31158799966331 8.17725701784634 8.14907781841322 8.10618060451353 0.14028436970179 0.144734425949847 0.150167363315137 0.142169033539136 0.140748599769945 0.139421517317402 0.145359307848199 0.145177763061724 0.138063959782015 0.141796160947582 0.147852062531185 0.146788870674568 0.151996936339941 0.146346753479594 0.146851251635151 0.144533143998165 0.154237913325928 0.141287539181562 0.142971274587412 1 1 + 9186624 9187123 9186868.545 9184593 9187492 + gene protein_coding_gene FALSE TRUE AT1G26580.1 similar to myb family transcription factor / ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03470.1); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1) 0.465400447330312 4.28179537192743 0.00132692573294225 1 4.57301061704005 15.9859202265221 0.465400447330312 0.119482785969252
AT3G09840_at 11.3139446639193 11.2423429227584 11.6716136430055 11.6693076377327 11.3762550965371 11.3816896991867 10.5590985128128 10.7298166709608 11.0958601551766 10.7988934410210 11.1285183609480 11.0752724144181 11.0507008657560 11.1431414870743 10.7867166784640 11.1201095173422 11.0148615512253 10.9207113508328 10.7451478962222 0.0680665813271949 0.0708723771818549 0.0697400180189802 0.0678348339260062 0.0695741045220825 0.0694570916043846 0.073577874561139 0.0734722223361181 0.0775210445633132 0.0690645841891167 0.068064929089411 0.0677076892850607 0.0706400777985886 0.0689821391249109 0.0723655176016935 0.0679961672727065 0.076934295554999 0.0689796738336093 0.0708978035999288 3 3 + 3022208 3022798 3022479.364 3019345 3023057 + gene protein_coding_gene FALSE TRUE AT3G09840.1 CDC48 (CELL DIVISION CYCLE 48); ATPase Encodes a cell division cycle protein, a member of AAA-type ATPases gene family Identical to Cell division control protein 48 homolog A (AtCDC48a) (CDC48A) [Arabidopsis Thaliana] (GB:P54609); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to putative spindle disassembly related protein CDC48 [Nicotiana tabacum] (GB:ABF59516.1); similar to Cell division cycle protein 48 homolog (GB:Q96372); similar to Cell division cycle protein 48, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53974.2); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase, CDC48; (InterPro:IPR005938); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase VAT, N-terminal; (InterPro:IPR003338); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.356726345310176 4.28092159965692 0.00132885599201777 1 4.57175274818929 22.1979942020629 0.356726345310176 0.0320531395281846
AT3G17470_at 7.0419463041622 6.95067001029287 7.14343535258749 6.75533012335938 7.3770345177057 7.10842945540361 7.77479924720256 7.81283358482434 8.18783753685538 7.88647198182154 7.80520051388795 7.4717469342542 7.65440828385613 7.63351044020878 7.35333142630531 7.73851151066959 7.13373194713843 7.41319342044187 8.05762727040199 0.135978334033807 0.135225582623105 0.134633895931060 0.137953663073334 0.135844673110733 0.147203815056366 0.131263380752772 0.134216836553414 0.140155316355533 0.134926699437792 0.139439606557787 0.134648685740475 0.136829928127280 0.135917340294785 0.138664651874859 0.131237350372513 0.139108510902622 0.132140833760792 0.133725674093527 3 3 + 5981233 5981945 5981560.364 5979840 5982121 + gene protein_coding_gene FALSE TRUE AT3G17470.1 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT like protein RSH4 [Nicotiana tabacum] (GB:BAC76005.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.408764772227066 -4.27884226808359 0.00133346129291227 1 4.56875888742547 15.0302764440864 -0.408764772227066 0.0834533254773168
AT3G10030_at 5.65379891190685 5.73579246571015 5.41566154998462 5.87776851860764 6.05102861307092 6.44862126984878 5.06010491790273 4.81903105138348 4.89512965641188 5.15985314283965 5.66344045073472 5.31235949552898 5.33064081856043 5.38509150217919 5.06265932771622 5.8363473152017 5.7024881771464 4.86176293862121 5.28400079812585 0.215085081633164 0.214701038055111 0.211318181265085 0.223634502039236 0.226686397695106 0.224929888152431 0.213883864527668 0.215039706954721 0.225049072543015 0.219141272388729 0.211145060394839 0.221709310248225 0.215096260100865 0.226921241057036 0.215271263555670 0.211145060394839 0.215268303585958 0.226781440879339 0.227437881298750 3 3|0 -|/ 3092703 3093518 3093089.8 3092028 3094950 - gene protein_coding_gene FALSE TRUE AT3G10030.1|AT3G10030.2 aspartate/glutamate/uridylate kinase family protein similar to aspartate/glutamate/uridylate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18680.1); similar to MADF; Uridylate kinase; Homeodomain-related [Medicago truncatula] (GB:ABE89083.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048)|similar to aspartate/glutamate/uridylate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18680.1); similar to Aspartate/glutamate/uridylate kinase; MADF; Homeodomain-related [Medicago truncatula] (GB:ABE80123.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048) 0.456221185952083 4.27831756336137 0.00133462604581885 1 4.56800329921166 10.886397555137 0.456221185952083 0.114329074526384
AT1G79050_at 7.61128690507109 8.2259360346544 7.80914817648192 7.93589272224879 8.08492218296451 7.40003761961718 8.18182202795812 8.03583670310993 7.78951150232991 8.15818347430843 7.14438203628404 6.92396099274245 7.33606544591153 7.15951712996971 6.98283022669022 7.8952936868585 7.35789173320281 7.0225326038721 8.39430485636395 0.205275986554051 0.204139540958917 0.209133786626193 0.200869762373509 0.201279413492582 0.214243876396050 0.201146430532919 0.206490624303350 0.225472641740629 0.199422931694988 0.207041952530790 0.199422931694988 0.199422931694988 0.231061278648833 0.212426201680831 0.199422931694988 0.219425852378717 0.22608551682937 0.203184095137071 1 1|0 -|/ 29741979 29743112 29742452.6 29741852 29745072 - gene protein_coding_gene FALSE TRUE AT1G79050.1|AT1G79050.2 DNA repair protein recA Identical to DNA repair protein recA homolog 1, chloroplast precursor (Recombinase A homolog 1) (RECA) [Arabidopsis Thaliana] (GB:Q39199;GB:Q39200); similar to recA family protein [Arabidopsis thaliana] (TAIR:AT2G19490.1); similar to replicase (GB:AAA32855.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain RecA; (InterPro:IPR013765) -0.546205477381481 -4.27811156931187 0.00133508360770570 1 4.56770665056827 15.581514884651 -0.546205477381481 0.162729946236817
AT3G15352_at 4.26642526105658 5.00683983626238 4.78487859368402 4.92168636582705 3.62743563276203 3.66368036292387 4.19869686171267 4.76872208633954 4.44328758405683 4.95305356567717 3.74593169644835 4.07467939812784 3.82802215893129 3.76605391575447 3.61565075184164 4.06211120742502 3.52427022751372 4.31796124837218 4.55872658847512 0.215123846129740 0.21229972541862 0.213991178192576 0.224586301877069 0.210655559553135 0.209866701973095 0.212434171000453 0.216297950834606 0.220609657823532 0.209717199580013 0.215614537398877 0.221353555578259 0.220991888600880 0.212197040318658 0.214785970602564 0.213245225829136 0.212293333376066 0.211408174335572 0.209717199580013 3 3 + 5180273 5180469 5180375.727 5179507 5180672 + gene protein_coding_gene FALSE TRUE AT3G15352.1 ATCOX17 (Arabidopsis thaliana cytochrome c oxidase 17) Encodes protein similar to yeast COX17, a copper-binding protein that mediates the delivery of Cu to the mitochondria for the assembly of a functional cytochrome oxidase complex. similar to cytochrome c oxidase copper chaperone family protein [Arabidopsis thaliana] (TAIR:AT1G53030.1); similar to F40G9.2 [Caenorhabditis elegans] (GB:NP_497175.1); similar to Os09g0420700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063198.1); similar to Os02g0794600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048378.1); contains InterPro domain Cytochrome C oxidase copper chaperone; (InterPro:IPR007745) -0.547802471530721 -4.27773061001494 0.00133593024177214 1 4.56715801960476 8.66405778588178 -0.547802471530721 0.163550166623753
AT3G01270_at 1.33522389473425 1.31910532671195 1.57499359441246 1.38413105079585 1.36880640353476 1.56976880313003 1.39604829595007 1.59585350032429 4.56578357140949 1.28863423322134 1.83854582843014 1.67050350170144 1.62626215602619 1.41019543736075 1.47225613834010 1.61789316942141 1.92559094153603 1.73929051630679 1.59601325729242 0.191376550074571 0.191376550074571 0.191376550074571 0.196998506815310 0.194893635452274 0.194234157365831 0.191376550074571 0.191376550074571 0.223710075282236 0.200082599969777 0.198584018678118 0.198687239442107 0.196470944397745 0.191376550074571 0.198255165523217 0.194230418605778 0.203915553363988 0.200425250771151 0.192191677091571 3 3 - 82911 83627 83219.727 82692 84904 - gene protein_coding_gene FALSE TRUE AT3G01270.1 pectate lyase family protein Identical to Probable pectate lyase 7 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9SRH4;GB:Q8LGC8); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G15110.1); similar to Pectate lyase, N-terminal; Pectolytic enzyme, Pectin lyase fold [Medicago truncatula] (GB:ABE84460.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectate lyase, N-terminal; (InterPro:IPR007524); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.379021300481296 -4.27675918526465 0.00133809165531702 1 4.56575893731265 3.51601347458993 -0.379021300481296 0.0591928726920782
AT2G23460_at 7.2051862460128 7.19886881205694 6.49459178269451 6.73373205954345 7.31279669966848 7.0425977807159 7.24179772891097 7.23027554777625 7.47326523268306 7.43294200743108 7.12316444189074 7.13433989278796 6.97976135464259 7.06420006141922 7.04906286138478 7.45568835224924 6.52090526134706 6.92664172042418 7.51498748431717 0.189913288905721 0.182894305010225 0.193806871681511 0.194513896253068 0.188328501084472 0.202171829755009 0.192521063673336 0.189802438974511 0.20026542086297 0.198476866040617 0.191879593058028 0.184140945077637 0.185036826183413 0.184947936184666 0.188580568900898 0.182698041990229 0.206618584311353 0.199691461080053 0.18891249818927 2 0|2 /|+ 10005486 10005994 10005735.1 10002558 10006202 + gene protein_coding_gene FALSE TRUE AT2G23460.1 XLG1 (EXTRA-LARGE G-PROTEIN 1); signal transducer encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits. similar to XLG3 (extra-large GTP-binding protein 3), signal transducer [Arabidopsis thaliana] (TAIR:AT1G31930.2); similar to XLG2 (extra-large GTP-binding protein 2), signal transducer [Arabidopsis thaliana] (TAIR:AT4G34390.1); similar to G-protein alpha subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91995.1); similar to extra-large guanine nucleotide binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99166.1); similar to Os11g0206700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067461.1); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) -0.382556792287934 -4.27675825117699 0.00133809373541629 1 4.56575759193258 14.3102068662117 -0.382556792287934 0.0624840455076072
AT2G23340_at 5.27689322315668 5.0522363805317 5.02355738139217 4.36457963873215 5.09384977767398 4.72511934810232 7.44603878857772 6.35711340212666 6.16947056569182 6.35954156911106 5.84845695436471 6.48460617067215 5.5760720288834 5.58762870950165 5.69385489961519 6.52470148788317 5.87844384569371 5.6392832644629 5.65981401355133 0.251582513487911 0.252966537001805 0.246906482522324 0.254946819701932 0.245649439836292 0.244725053987241 0.251248649984202 0.262640285220419 0.248861712143483 0.248465276555456 0.241601864530990 0.243812412000106 0.24455430488876 0.248211657939800 0.255954108650717 0.241601864530990 0.245740761212327 0.246887944678246 0.245933955938860 2 2 + 9945267 9945706 9945499.818 9945078 9945955 + gene protein_coding_gene FALSE TRUE AT2G23340.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to RAP2.10 (related to AP2 10), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36900.1); similar to Os04g0648900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054079.1); similar to H0721B11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86045.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.695052520719914 -4.27342886138123 0.00134552942778175 1 4.56096134405122 11.4009599773297 -0.695052520719914 0.232592356073714
AT3G49910_at 11.4345043349823 11.4576729637166 10.9534250991463 10.9801629318933 11.0959914335853 10.9907259516014 11.4469406479548 11.6754685185867 11.0935779078157 11.0523588162747 10.9326843142082 11.1465683491265 10.7529513547574 10.7065471900814 11.4339160510263 10.5490109771668 10.3420574016714 10.6831434777360 10.9996675130014 0.0949377275639401 0.0943933198019845 0.09291292016421 0.090960685813755 0.0946931107668187 0.101791698229042 0.100121721566263 0.0943506949821265 0.103059408506753 0.0971028737420692 0.0955930607701989 0.090960685813755 0.0972303192312744 0.0981200723605296 0.0960530318243066 0.095036221936392 0.100151873174773 0.103317711312371 0.0937012128754362 3 3 + 18515298 18515665 18515458 18515241 18515952 + gene protein_coding_gene FALSE TRUE AT3G49910.1 60S ribosomal protein L26 (RPL26A) Identical to 60S ribosomal protein L26-1 (RPL26A) [Arabidopsis Thaliana] (GB:P51414;GB:Q9M2W7); similar to 60S ribosomal protein L26 (RPL26B) [Arabidopsis thaliana] (TAIR:AT5G67510.1); similar to 60S ribosomal protein L26 (GB:Q39411); contains InterPro domain Ribosomal protein L24/L26; (InterPro:IPR005825); contains InterPro domain Ribosomal protein L26, eukaryotic and archaeal form; (InterPro:IPR005756); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) -0.364372559239507 -4.2714462833101 0.00134997774959990 1 4.55810444976081 22.1878088027678 -0.364372559239507 0.0439700218578901
AT4G17370_at 8.32491534877487 8.06045647106749 8.67775183129804 8.69420941483932 8.98943837262078 8.8322630840082 8.34226653941455 8.19751600405927 7.41064240348048 7.95537146666144 7.89094662459973 7.58236843515819 7.81810450970563 7.77274177478509 7.76075054317724 7.95718471131587 8.53814110369378 7.87903576527206 7.76572642111398 0.177246450503560 0.178861521772323 0.178219259023055 0.187068734135587 0.180890675651501 0.192091427091782 0.179394663921203 0.180601525972691 0.18587167393536 0.182233954343757 0.185922009705595 0.178405156848277 0.191427016390412 0.188260802544843 0.183881507876698 0.182541925757533 0.193001878701264 0.180418639786228 0.181599855936659 4 4 + 9706965 9708121 9707622.909 9706070 9708273 + gene protein_coding_gene FALSE TRUE AT4G17370.1 oxidoreductase family protein similar to oxidoreductase family protein [Brassica oleracea] (GB:ABD65136.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) 0.378228085620343 4.27119330711606 0.00135054645997207 1 4.55773986636155 16.3200967735347 0.378228085620343 0.0589062770167724
AT2G21860_at 8.59595175865896 8.72431756842525 8.15698251329425 8.30853680342377 8.28603913850911 8.21492494741001 9.41810936577932 9.64445097757278 8.60616036668185 8.97367752034087 8.6921595913233 9.22447915470844 8.76625549033207 8.86929254577363 9.44625177161138 8.82634244629913 8.48454943683 8.6571217564377 8.7069132663967 0.106646853361080 0.104914867812586 0.116773009060290 0.110704807182219 0.113165970922777 0.117702607878109 0.112867862210261 0.112473812019705 0.109240251639508 0.104914867812586 0.110269025877031 0.104914867812586 0.107136052934346 0.109524217665669 0.110440036470136 0.111071089644182 0.119673534273262 0.109227753040212 0.107912049215680 2 2 - 9325464 9325904 9325696.818 9325338 9327082 - gene protein_coding_gene FALSE TRUE AT2G21860.1 violaxanthin de-epoxidase-related similar to NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1) [Arabidopsis thaliana] (TAIR:AT1G08550.2); similar to Os01g0716400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044070.1); similar to hypothetical protein MtrDRAFT_AC155898g25v1 [Medicago truncatula] (GB:ABE87708.1); contains InterPro domain Calycin-like; (InterPro:IPR011038) -0.372765213629233 -4.27028251545944 0.00135259606845952 1 4.55642717071106 17.4851925884530 -0.372765213629233 0.0535447566355475
AT1G64530_at 4.42283606428927 4.17143178378981 3.94233302518149 4.22104389068806 3.939703612496 4.09132504090669 4.52844294014208 4.63836686740952 5.35734887897446 5.09257644371036 4.87029269403201 4.69501154238548 4.55825146821652 4.69431898884 4.63195782439485 5.08831869213458 4.64489735455885 4.64202778262597 4.9219932975048 0.179431044818507 0.170933329444191 0.163578384918619 0.162849884210826 0.167792878629374 0.174086545880752 0.177677184530274 0.174539502655447 0.172728149709089 0.172900972770919 0.164342296795638 0.171147943760902 0.185382285831173 0.173327264228616 0.163402434756107 0.162933636862291 0.179719773617640 0.168646040077033 0.185515157055247 1 1|0 +|/ 23965874 23966481 23966186.4 23963324 23966744 + gene protein_coding_gene FALSE TRUE AT1G64530.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G24020.1); similar to Os01g0236700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042530.1); similar to putative nodule inception protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33743.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.393753175793807 -4.27004453261729 0.00135313215159035 1 4.55608415180838 9.1704891115104 -0.393753175793807 0.0725914678156268
AT3G10610_at 7.29111728510839 7.39571458077271 6.22950917368724 6.15481300663764 6.73802686936116 7.26590107458946 7.63207596729566 7.75685053224208 5.97917990846345 6.56798193622806 6.17988572540145 7.43242622761052 6.70143712944514 6.01076900076052 7.47201209022449 6.25418003059374 6.40474628202445 6.4477616420245 7.08622019982101 0.214020041855283 0.212302265228157 0.206880498860204 0.213567267550083 0.207107475406562 0.209999463326083 0.208549809246829 0.216618900511885 0.225623675795980 0.211035915912291 0.207477937958476 0.208539858967425 0.205496808632401 0.225856069055431 0.213932622213958 0.210276092441789 0.234350853132465 0.207714072095955 0.204437107550961 3 3 + 3319493 3319857 3319663.455 3319032 3320154 + gene protein_coding_gene FALSE TRUE AT3G10610.1 40S ribosomal protein S17 (RPS17C) Identical to 40S ribosomal protein S17-3 (RPS17C) [Arabidopsis Thaliana] (GB:Q9SQZ1); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G05220.2); similar to 40S ribosomal protein S17-like protein [Solanum tuberosum] (GB:ABA46777.1); contains InterPro domain Ribosomal protein S17e; (InterPro:IPR001210) -0.426717737889705 -4.26993885153467 0.00135337028141011 1 4.55593182446896 13.6366825349692 -0.426717737889705 0.0964676890626306
AT3G57170_at 5.70457414791499 5.47290031389804 5.68479130090333 5.35581179925426 6.74195958133832 6.2305591123441 5.40057684020296 5.05951543958669 5.2117996592352 5.86363740456021 6.00055814255503 5.94146594162235 5.96242605726304 6.0745015825453 5.79747387702394 6.15132260734203 6.49529557979679 5.69711421160449 5.88599799714306 0.234325495177942 0.225056381411797 0.242762515964226 0.229348470204303 0.222420647279649 0.235788387474166 0.235805135918038 0.22770600655434 0.246415544286566 0.222420647279649 0.22997659314037 0.224274990514931 0.236013592797835 0.22543999747943 0.237121968796399 0.223086134129229 0.231350413085013 0.237195271478355 0.222420647279649 3 3 - 21170613 21171326 21171062.455 21170386 21174163 - gene protein_coding_gene FALSE TRUE AT3G57170.1 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein similar to N-acetylglucosaminyl transferase component [Medicago truncatula] (GB:ABD33301.1); contains InterPro domain N-acetylglucosaminyl transferase component; (InterPro:IPR007720); contains InterPro domain Myelin proteolipid protein PLP; (InterPro:IPR001614) 0.477548413024477 4.26990398705826 0.00135344885070532 1 4.55588157087778 11.5407517854046 0.477548413024477 0.127139670166512
AT1G31760_at 2.09882133599754 2.33916594379907 2.86646627568337 2.60632844792957 2.03066557709084 2.74801077832242 2.00662367448659 2.17808376105021 1.69129918165805 2.01552597456654 2.3246065673656 2.25280036441989 2.19451275461436 2.53071754584686 2.76896697520354 2.15095357810385 2.78611420748146 2.090112667285 1.65289517534554 0.215834030316111 0.21162018645756 0.226291435032498 0.217162063335941 0.210466437027942 0.214277662117269 0.2119839750652 0.212264422260425 0.224494434686356 0.232284021052377 0.213372250790553 0.211460837562974 0.217095109404796 0.216901788373829 0.212629479292669 0.215685061052233 0.219640404068293 0.212394469529749 0.210829235447058 1 1|0 -|/ 11372605 11373354 11373200.1 11372406 11373463 - gene protein_coding_gene FALSE TRUE AT1G31760.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35605.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) 0.503984364803277 4.2692420644784 0.00135494144092294 1 4.55492744040308 4.44623148749334 0.503984364803277 0.141590013586711
AT4G32880_at 3.76738162880772 3.20366926168382 3.40825180687525 3.14184082999254 3.07882794902584 3.25735411509821 4.08531009722429 3.88439521235246 3.49094198252778 4.07201300214656 3.59667183028466 3.93181777598827 3.39056239972206 3.35456268069596 4.17857694057095 3.37225526959371 3.44158214964029 3.24648652933801 4.35089080512965 0.224037984588099 0.230060333600602 0.233447273970528 0.226752067452355 0.226001117777424 0.225725383996123 0.232708284562014 0.221051159094939 0.235265535186101 0.239684425695025 0.222481342051107 0.229433534477113 0.225841727297799 0.228533414560551 0.232434732273096 0.225581380068961 0.230036931526855 0.237795855651668 0.236777338505087 4 4 - 15863607 15864303 15864032.909 15863456 15868629 - gene protein_coding_gene FALSE TRUE AT4G32880.1 ATHB-8 (HOMEOBOX GENE 8); DNA binding / transcription factor member of homeodomain-leucine zipper family, acting as a differentiation-promoting transcription factor of the vascular meristems. similar to REV (REVOLUTA), DNA binding / lipid binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60690.1); similar to PHB (PHABULOSA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G34710.1); similar to ATHB-15 (INCURVATA 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G52150.1); similar to Lipid-binding START; Basic-leucine zipper (bZIP) transcription factor; Homeodomain-related [Medicago truncatula] (GB:ABE78376.1); similar to class III HD-Zip protein 8 [Populus trichocarpa] (GB:AAX19057.1); similar to class III HD-Zip protein 7 [Populus trichocarpa] (GB:AAX19056.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.460418928862266 -4.2673231544462 0.00135927819515391 1 4.55216102937908 7.24605205108947 -0.460418928862266 0.117496957855756
AT4G38940_at 5.69339449551448 5.72018472892338 6.1998885710863 6.0006341107042 6.74400598357222 6.05350736903038 5.44770906713163 5.51925451179817 5.83328536242599 5.62188460805046 6.28640531678933 5.9633873042846 6.14411524656642 6.03265191647171 5.97915306802869 6.04274229092624 5.95058151290141 6.09882593577514 5.85372827923204 0.200191910348152 0.192696742646844 0.204110079890495 0.199070353963399 0.213072896290303 0.204079588855029 0.193424489286215 0.199007691826867 0.205225000688237 0.19915562561789 0.192696742646844 0.193607682462487 0.192696742646844 0.192696742646844 0.192696742646844 0.197325939953427 0.192857270912459 0.200382936208462 0.197999695971653 4 4 + 18153386 18153930 18153604.818 18152681 18154108 + gene protein_coding_gene FALSE TRUE AT4G38940.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G10510.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.473486690910736 4.26643218378385 0.00136129673262092 1 4.55087635682827 11.8382551416555 0.473486690910736 0.125070419280514
AT3G15620_at 1.94226697474252 2.03160318324203 1.19465007814640 1.33456357893056 1.63856445788159 1.75423165063899 1.19635214963291 1.64622260939697 2.68133189481609 1.94492309861614 1.63299652227842 1.59994040508332 1.37964373283042 1.52951378323530 1.34237524803035 1.40880609130378 1.3518882829766 1.22719239254497 1.46561141761297 0.197534759803471 0.195726629772387 0.201530252803468 0.195844744542266 0.196692651414087 0.194389998589808 0.195644146018895 0.195408074498646 0.199568894896694 0.195758404052568 0.193800170490295 0.196515243505611 0.195570664594084 0.19562756769457 0.202209549866358 0.191282488025612 0.197539371919424 0.200571002307235 0.191298590536830 3 3|0 -|/ 5293881 5294584 5294249.875 5293313 5296599 - gene protein_coding_gene FALSE TRUE AT3G15620.1|AT3G15620.2 UVR3 (UV REPAIR DEFECTIVE 4) Required for photorepair of 6-4 photoproducts in Arabidopsis thaliana. similar to CRY2 (CRYPTOCHROME 2) [Arabidopsis thaliana] (TAIR:AT1G04400.1); similar to 6-4 photolyase [Dunaliella salina] (GB:AAX56342.1); similar to Os02g0204400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046243.1); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050)|similar to CRY3 (CRYPTOCHROME 3), DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] (TAIR:AT5G24850.1); similar to 6-4 photolyase [Dunaliella salina] (GB:AAX56342.1); similar to Os02g0204400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046243.1); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050) -0.410093183791948 -4.26513921590257 0.00136423159508084 1 4.54901182937686 3.32464018247673 -0.410093183791948 0.0853633376130949
AT1G33440_at 1.67867252368443 2.10209412303927 1.02328083630715 0.803996625609742 0.696335822163876 1.17165281121859 1.48464777897704 1.79904439330506 1.46258973442846 1.37328512525251 1.52860614799502 1.59689689759803 1.23759939074492 1.43527177352012 1.24329326744877 1.36027899129179 1.31212886747372 1.81759115777521 1.83917825383419 0.221710090555118 0.217899839988535 0.226592491210168 0.229404042392395 0.224122722643277 0.221070240289965 0.220699019117140 0.223723656285259 0.223759137674347 0.217899839988535 0.227366653559198 0.218377537987962 0.223114718124154 0.224401729255001 0.226885879871728 0.220612707623767 0.228550642583473 0.222362762751764 0.230261584886869 1 1 - 12127760 12128231 12128001.909 12127369 12130387 - gene protein_coding_gene FALSE TRUE AT1G33440.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G59740.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE78967.1); similar to P0076O17.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE02510.1); similar to POT family, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96656.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.479595453517024 -4.26501658139146 0.00136451030242839 1 4.54883497026236 2.84487028907281 -0.479595453517024 0.128590548522653
AT2G39050_at 7.72582767697884 7.58920208422225 8.38654840454502 8.48621440063356 7.27519170650763 7.75733169448299 7.41305319543839 7.7962025452233 4.93244644364464 5.78874679294683 5.64167262345572 4.90885330917321 6.49184434560259 6.07235508150028 5.47895945576241 6.20431553755244 7.30722621056553 5.78628193024338 5.5833052035086 0.206978889232472 0.206978889232472 0.209770781731092 0.208835683671148 0.212967686692661 0.210627086424699 0.21271696907186 0.207892154801097 0.22739537512798 0.207042459245686 0.225361343441344 0.212386941298352 0.21777118960835 0.215415797796107 0.21686829160512 0.208708244356193 0.210356818511813 0.209416438142077 0.216796789416642 2 2|0 +|/ 16310910 16312137 16311319.2 16310481 16312707 + gene protein_coding_gene FALSE TRUE AT2G39050.1 hydroxyproline-rich glycoprotein family protein similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to osr40g2 [Oryza sativa] (GB:CAA70174.1); similar to Os07g0683600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060666.1); similar to Os01g0104400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041764.1); contains InterPro domain Ricin B lectin; (InterPro:IPR000772); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) 0.44842796222093 4.26469290230904 0.00136524620324258 1 4.54836816042673 13.5143321510533 0.44842796222093 0.110519793895589
AT4G24570_at 3.40510947005446 3.35000644725672 3.05451497844486 3.15515942901633 3.10176659684868 3.03235559531956 2.88953017605863 3.17243947821944 3.75681425364237 2.85377278339258 3.76268183588422 4.96852864497207 3.11056389251258 4.38129769164337 4.67364930252219 2.79505197856950 3.87411519991175 4.55007830019222 2.84164834587979 0.248442541455611 0.249834979854058 0.2535286921376 0.254012267696887 0.248590409622550 0.257432939364065 0.251053717636441 0.245773384760621 0.276262166325138 0.246764878264577 0.250703351051378 0.251686932860905 0.249661227672815 0.255318584332265 0.266211824274666 0.248789983095105 0.265233957465759 0.260895503817809 0.258773133736722 4 4 + 12686939 12687444 12687184 12686469 12687660 + gene protein_coding_gene FALSE TRUE AT4G24570.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G22500.1); similar to putative mitochondrial dicarboxylate carrier protein [Trifolium pratense] (GB:BAE71294.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.372714242573891 4.26266223835452 0.00136987250646769 1 4.54543916000564 6.72773076310945 0.372714242573891 0.0541805407571888
AT4G01710_at 6.64651569229759 6.78972501391788 6.43761830009245 6.79985823683353 7.37663331968028 6.63483062172824 6.19631446948587 6.11304177658824 5.58916690859508 5.00995351990854 6.21248411201193 5.80635178304486 5.49134569891941 6.20249406212115 6.04929999430912 6.28177630415176 6.11829130066889 5.35384068061598 5.28096201242072 0.231782642371203 0.223194377324901 0.244353301258101 0.233550261763635 0.225133960550937 0.223807892931757 0.231912543172697 0.231371206678012 0.241495030314251 0.237486286421184 0.225519192794777 0.233644463593249 0.226020420006165 0.229118054793111 0.222819649951041 0.229360393133017 0.235980982246969 0.221695539493404 0.223586775405973 4 4|0 +|/ 735968 736426 736214.75 735753 736604 + gene protein_coding_gene FALSE TRUE AT4G01710.1 CRK (CROOKED) belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome. similar to Actin polymerization factor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94290.1); similar to Os11g0557900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068095.1); contains InterPro domain ARP2/3 complex 16 kDa subunit (p16-Arc); (InterPro:IPR006789) 0.510980279925086 4.26249028591748 0.00137026500489365 1 4.54519110837304 12.2407403316389 0.510980279925086 0.145708765740816
AT3G13810_at 8.4981433142896 8.44380790683008 8.90744850983219 8.96882494048366 9.18303612973523 9.19019291836876 7.83591763522023 7.91231114416235 7.41516733549255 5.99439622430562 6.5753292400711 6.19098150717033 7.08986963999956 6.92280223972651 5.91030491392957 6.79493394749681 7.14241025998481 6.3650152022834 7.03797564794706 0.171689581680800 0.170225522344545 0.172271714993878 0.170452588985498 0.172636647123178 0.171909548480219 0.171759087855513 0.170574671370490 0.190977935863908 0.182019558447681 0.171248195221555 0.172415749665039 0.184013625842673 0.173111512719469 0.174883792899485 0.176063825861373 0.177101467342745 0.196672222166529 0.170225522344545 3 3 + 4546729 4547278 4547008.727 4544497 4547417 + gene protein_coding_gene FALSE TRUE AT3G13810.1 ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding similar to ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 7/ATIDD7, nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G55110.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE79766.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.348970045365208 4.26179506903803 0.00137185310616129 1 4.54418816901075 15.3373614480725 0.348970045365208 0.0194304174942571
AT3G44280_at 7.49962796009429 7.95084845574344 7.89567035874037 8.37586594368773 8.57497571322784 7.89511822452366 7.8144568165451 7.854502290715 7.13293031875236 8.03132872796755 8.46433173911912 8.45598039836105 8.32147157358953 8.38867207771245 8.26903661409105 8.2973900396865 8.13787433741152 7.76017219184555 7.5582524342522 0.200481700576422 0.197958909093977 0.192298295397662 0.194781023525003 0.193896216209532 0.201229778286508 0.192989345242034 0.206134731773865 0.212031826593430 0.194868051402287 0.194328161811714 0.192467956154565 0.191083913181224 0.188858057037285 0.198239413909525 0.19385506373635 0.197815286378672 0.203471367898226 0.205996383738134 3 3 - 15979795 15981481 15980634.6 15979580 15982154 - gene protein_coding_gene FALSE TRUE AT3G44280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22280.1); similar to Os02g0536100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047042.1); similar to Os03g0836500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051825.1); similar to unknown protein, 3'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAO41143.1) 0.546622153545086 4.26161719108393 0.00137225974654882 1 4.54393154502521 15.9006515279769 0.546622153545086 0.163991331191769
AT3G28030_at 4.93667085866113 5.14519121559917 5.56775457888985 5.36458725680508 5.39043755077113 5.51820769381514 4.3281270801108 4.65039340537931 4.1209227787061 4.85200677203981 4.55497328222353 5.02161932326074 4.67702030299878 4.76660321630865 4.35764804958832 5.09712660591335 5.04833184169457 4.42172002629555 4.94101831890397 0.218476952914129 0.214294238974105 0.226543107071106 0.214294238974105 0.214502958603619 0.216360495564623 0.218244714733797 0.214589524486313 0.223551527726711 0.216002096961016 0.228993206803972 0.214294238974105 0.225101703537398 0.222998733339305 0.229139376608000 0.214294238974105 0.21968682901921 0.230904939693717 0.217711094147442 3 3|0 +|/ 10431738 10432369 10432088.556 10425490 10432441 + gene protein_coding_gene FALSE TRUE AT3G28030.1 UVH3 (ULTRAVIOLET HYPERSENSITIVE 3, UV REPAIR DEFECTIVE 1); nuclease Required for repair of pyrimidine-pyrimidinone (6-4) dimers. Identical to DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) (UVH3) [Arabidopsis Thaliana] (GB:Q9ATY5;GB:Q9LRT2); similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G01880.1); similar to hypothetical protein [Neurospora crassa OR74A] (GB:XP_965045.1); similar to Os03g0205400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049313.1); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084); contains InterPro domain 5' (InterPro:IPR000513); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain Xeroderma pigmentosum group G protein; (InterPro:IPR001044) 0.400149418975756 4.26021553814688 0.00137546843069408 1 4.54190920982306 9.80322768212998 0.400149418975756 0.0783420764110652
AT1G13970_at 2.18591333112023 1.86055314174780 2.85755233794255 2.78710368912472 2.34505313519509 2.46136571344154 1.44639749750426 1.12030292030686 1.60499919655118 1.60415427671149 1.18115795599038 1.12935891719365 1.63578242798069 1.77138759826758 0.837275079201875 1.39117214850084 1.63027968190205 0.674362547178552 1.07450903940372 0.193506497179865 0.198788044165270 0.200218655106562 0.211681921297928 0.192961652214324 0.198917465093713 0.194951070302965 0.196844996729411 0.203269954858671 0.201710559024622 0.192521909502755 0.197439955380885 0.203465188715707 0.200890333738249 0.199499106135271 0.193522647901903 0.194625012411515 0.200163047964844 0.196472843438428 1 1|0 -|/ 4779755 4780574 4780200.667 4779520 4782539 - gene protein_coding_gene FALSE TRUE AT1G13970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29180.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38509.1); similar to Os12g0577600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067115.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98316.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.406468268280504 4.25959413795717 0.00137689345968906 1 4.54101254097026 3.48764749517242 0.406468268280504 0.0831182386343681
AT1G03720_at 2.72972126234581 2.81991713146677 2.67255696263962 2.90425520982554 2.32798570735497 2.6672351347819 2.71734470619847 2.79435639627325 3.5439520935696 3.65627055674182 2.72211066934139 3.12454593490826 3.25732974384183 3.03651032496312 3.08456396687858 2.82293431043130 3.18299105857574 3.24304208348450 3.97756292431198 0.203999672681390 0.209873597185593 0.199651446601626 0.21032880017676 0.200123661070596 0.205145439748707 0.202695577283037 0.214283360835528 0.207178735911527 0.202728256063465 0.207929805869573 0.198787087708139 0.198787087708139 0.209363058353481 0.20483040056429 0.199659472401017 0.207898485277466 0.200740788528513 0.200174349978033 1 1 - 925002 925743 925372.091 924996 926373 - gene protein_coding_gene FALSE TRUE AT1G03720.1 cathepsin-related similar to cathepsin-related [Arabidopsis thaliana] (TAIR:AT5G17080.1); similar to Cathepsin L [Contains: Cathepsin L heavy chain; Cathepsin L light chain] (GB:Q10991); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -0.394500816870973 -4.25921337942842 0.00137776739921574 1 4.54046308342921 6.09676258207457 -0.394500816870973 0.073997888310798
AT3G06070_at 9.33938631797759 9.36225470891505 8.4897818490059 8.2959103608696 9.83611361909056 9.14819579013936 9.21698040888054 9.05226386680112 10.1061326894299 9.32152063862992 9.44599022208372 9.1817165464809 9.22682034174644 9.36640795819599 8.20171741362752 9.57741454490264 8.5697624217413 9.07650312914186 9.77014040287105 0.158888051001866 0.144201511287552 0.154835267379816 0.168798891266827 0.144775393640154 0.154863122529624 0.146922462044299 0.141331748028236 0.147303493040109 0.147546760759537 0.142738009507297 0.144621973067075 0.143892219074452 0.147710895478700 0.153443814959936 0.146840540955119 0.148493082424695 0.141116125002713 0.149485128670338 3 3|0 -|/ 1831324 1831828 1831508.3 1831063 1831929 - gene protein_coding_gene FALSE TRUE AT3G06070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19190.1); similar to hypothetical protein MtrDRAFT_AC152499g26v1 [Medicago truncatula] (GB:ABE77806.1) -0.476013629468724 -4.25858428264294 0.00137921261129932 1 4.5395552086802 18.4993056064851 -0.476013629468724 0.126988591926902
AT1G01950_at 3.48925191472154 3.20598344672234 2.82714048945582 2.91539075358572 2.76076941025655 3.04907420072398 3.71541266226567 3.45404307666953 4.30321462133179 3.59418117131570 3.98311442509341 3.70222839340903 3.55156394392871 3.89030405611764 4.29021507730573 3.3512816009025 3.39684551687277 3.74918202446524 4.03510508953648 0.192006746758160 0.188874621325227 0.190848048168593 0.195850899708675 0.192038977698322 0.190055946221429 0.196982242804845 0.201480247911949 0.198372797895091 0.192470314803480 0.193542979827266 0.191174636918024 0.195101569428101 0.203291825884851 0.189300493948860 0.190600212359302 0.193851329684432 0.194294141980791 0.198437354169873 1 1 + 329408 330324 329891.273 325473 330619 + gene protein_coding_gene FALSE TRUE AT1G01950.1 armadillo/beta-catenin repeat family protein / kinesin motor family protein similar to PAK (PHOSPHATIDIC ACID KINASE), microtubule motor [Arabidopsis thaliana] (TAIR:AT1G12430.1); similar to Os06g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056731.1); similar to Os03g0152900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048996.1); similar to Kinesin motor domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94031.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.408118737944349 -4.25438380344868 0.00138890303389722 1 4.53349172971796 7.03555433121174 -0.408118737944349 0.0846841978979834
AT1G73400_at 3.96312189179912 4.15612875731751 3.82806370548749 3.71228156657865 3.93390281462684 3.75092691055279 4.16265155701921 4.46683687721791 3.80029423736188 3.27240159366427 2.71672300261474 2.90191929845624 3.07682226282871 3.35024271526575 2.75611595922477 3.43411435166355 3.14557808777158 3.14839732706744 3.33794447333484 0.222890966655333 0.211185046916255 0.215545627699708 0.216445455424255 0.211185046916255 0.224304363001838 0.216266478492942 0.211185046916255 0.216623287320548 0.212150999191935 0.213959518376532 0.211185046916255 0.213389984352276 0.213529015771469 0.216159183071201 0.213793774003557 0.219459847655305 0.211185046916255 0.211185046916255 1 1 + 27602880 27603412 27603165.182 27602073 27603473 + gene protein_coding_gene FALSE TRUE AT1G73400.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62470.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98845.1); similar to Os02g0759500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048182.1); similar to putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] (GB:AAK71569.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.392432665351196 -4.25377002358376 0.00139032496571317 1 4.53260549291715 7.26496554027424 -0.392432665351196 0.072737747925227
AT4G38200_at 6.21293219918433 5.88915075103952 4.90584641593356 5.02251114521785 5.46183389346503 5.06054407343766 5.35425169676974 5.59624335318491 5.83920656539799 5.4803397320746 5.26111728587859 5.81394139649012 5.44456611922953 5.44413417972213 5.4617699610349 5.37006731232581 4.92378274861816 5.22584091046342 5.42151970599619 0.168564792537378 0.163385057368481 0.175849203462655 0.170252484682779 0.168856043418897 0.177307817740733 0.173475151998638 0.165757808466011 0.170086369286022 0.161228986236708 0.166107957910073 0.16177094433163 0.169917620237690 0.172748654575443 0.178058456378241 0.166331018513189 0.166975192098353 0.166081870462759 0.165116094630419 4 4 + 17921917 17922415 17922120 17915287 17922726 + gene protein_coding_gene FALSE TRUE AT4G38200.1 guanine nucleotide exchange family protein similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G35380.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) -0.431331731650181 -4.25259776520674 0.00139304494754400 1 4.53091270408732 10.9121681028840 -0.431331731650181 0.100615857717707
AT4G37980_at 8.55065882383722 8.52177352138549 7.69306480477241 7.80662979989621 7.77738353348916 7.70424272182055 8.90512975685336 8.85171497890311 9.02542870466884 9.28103828986342 9.52086240602122 9.75812781397865 10.0313813538428 9.53328035785759 9.21266551181463 10.0435461332318 9.1529396425737 9.34849759902867 9.63778186769595 0.142054423927715 0.138890681798666 0.146520855975406 0.145813805767570 0.145684726128881 0.140426603584801 0.137601895601386 0.134706050742223 0.146519954398801 0.136960501583199 0.140759292800446 0.13757204930228 0.149219132626873 0.141030969810660 0.141297637223946 0.140391593379685 0.137147564181988 0.142850345573357 0.139732062123073 4 4|0 +|/ 17853512 17854271 17853892.8 17852435 17854494 + gene protein_coding_gene FALSE TRUE AT4G37980.1|AT4G37980.2 ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02971;GB:Q9SZJ9); similar to ELI3-2 (ELICITOR-ACTIVATED GENE 3) [Arabidopsis thaliana] (TAIR:AT4G37990.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:Q9ZRF1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)|similar to ELI3-2 (ELICITOR-ACTIVATED GENE 3) [Arabidopsis thaliana] (TAIR:AT4G37990.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:Q9ZRF1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.350788036849656 -4.2515639231852 0.00139544838285003 1 4.5294196145806 17.6712808541379 -0.350788036849656 0.0256296736072113
AT3G17880_at 8.07345445005265 7.9436048602693 8.17416989199545 8.15256877826334 8.36697829376545 8.24151902028976 7.68404155463775 7.28911880004854 6.67262327444832 6.85985146318238 6.70871329002568 6.90358813863099 7.0478142594935 7.18802177190147 6.99471521131808 7.30018750534565 7.5638338976064 7.00960899532383 6.82361472138878 0.158226807228473 0.155821569900631 0.156390066593329 0.158160298668048 0.157826809521665 0.159368033090607 0.160139763959120 0.1566475019302 0.167740485564452 0.160102583579987 0.158616765204695 0.158451162642828 0.159683097257995 0.156130838583706 0.159023910641222 0.156976920920488 0.160386814061037 0.163340053562854 0.159374978943648 3 3|0 +|/ 6124078 6126091 6125338.389 6123415 6126287 + gene protein_coding_gene FALSE TRUE AT3G17880.1|AT3G17880.2 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); thiol-disulfide exchange intermediate|ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX. similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT4G22670.1); similar to Hsp70 interacting protein/thioredoxin chimera [Vitis labrusca] (GB:AAK64512.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.395225655262827 4.25018875976211 0.00139865203347187 1 4.52743332313584 14.9281437245214 0.395225655262827 0.0752402862286537
AT1G19330_at 6.8714124898993 7.23283269779096 5.68547029665855 5.3528114634756 6.60617581053372 6.57267784585799 6.91881526591805 7.10423768600375 7.12187893515066 6.71138072317905 6.97205938211635 7.75235320982844 7.3489058877908 7.4661281764946 6.86021348372425 7.27671270775303 6.90462103656562 7.21766356275646 7.40891064831354 0.176454501474524 0.159524815820294 0.166347949348666 0.199681619099991 0.163510661942179 0.159975858762519 0.156797528329724 0.162919524752498 0.155835896219114 0.157119962246786 0.160196976275184 0.160542483341326 0.155771465387383 0.157901603796205 0.163620632892840 0.154926501190665 0.165057879947987 0.156479128700287 0.160094310131892 1 1|0 -|/ 6680851 6683111 6681620.2 6680554 6683520 - gene protein_coding_gene FALSE TRUE AT1G19330.1|AT1G19330.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75060.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69763.1) -0.416715967720304 -4.25014405980728 0.00139875629778505 1 4.52736875335307 13.6958320027305 -0.416715967720304 0.0910455130999317
AT2G17430_at 1.61558755984840 1.78889175547752 2.36285211105228 2.01627436669038 2.49171897604023 2.19802252723278 1.78730532366078 1.56170297943911 1.0221538084375 1.79693282316989 1.89652865970421 1.55959622982150 2.62534082221776 1.90534004190548 1.85535752387695 2.09385339873182 1.95187547268962 1.67778982997747 2.2406684884457 0.239751595122788 0.23604437583183 0.252291663377698 0.260617393117792 0.251657668612263 0.242901449071083 0.234532545368777 0.231593998139358 0.259164648217761 0.240106020992511 0.235862467017924 0.232128438244717 0.235117559343305 0.244883610874939 0.240740815592691 0.235314593471666 0.234734792750464 0.243382923881139 0.231593998139358 2 2|0 +|/ 7576917 7577816 7577473.375 7575100 7577922 + gene protein_coding_gene FALSE TRUE AT2G17430.1 ATMLO7/MLO7 (MILDEW RESISTANCE LOCUS O 7); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO7 belongs to the clade III, with AtMLO5, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed in vegetative organs (RT-PCR experiments)and in pollen grains, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 7 (AtMlo7) (MLO7) [Arabidopsis Thaliana] (GB:O22752;GB:Q94KB6); similar to MLO10 (MILDEW RESISTANCE LOCUS O 10), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G65970.1); similar to Mlo-related protein [Medicago truncatula] (GB:ABE78077.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.418985148997685 4.24779024932017 0.00140425815188397 1 4.52396819342595 3.79394209362183 0.418985148997685 0.0927586717785408
AT2G19780_at 2.8556722775018 2.8721010412021 2.34486088609236 2.07367605112695 2.57841291974521 2.23575096658360 4.93366939185284 4.51760691702576 3.72191250975923 3.76508275934437 5.02775013926281 4.94597135510489 4.57331098062932 4.79350096799572 4.41982539048196 3.65058771799721 3.38518988190406 4.26781291431441 3.82293268239944 0.220168484525415 0.219920278584285 0.229303099137742 0.225109763800657 0.227099710503775 0.220951248566169 0.236838910513491 0.235663758465176 0.229826193390133 0.220718587565661 0.219680623114867 0.225733022057025 0.219680623114867 0.219680623114867 0.224338301125272 0.219934724434042 0.226993950503119 0.227488649876530 0.22865283961496 2 2 - 8529968 8530441 8530172.364 8529760 8531156 - gene protein_coding_gene FALSE TRUE AT2G19780.1 leucine-rich repeat family protein / extensin family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G29240.1); similar to Leucine-rich repeat [Medicago truncatula] (GB:ABE84854.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.436784758190824 -4.24701498276959 0.0014060752311159 1 4.52284797189194 7.12795363253915 -0.436784758190824 0.104456276178478
AT3G27930_at 6.51734724434614 6.39340671415416 5.70489734892053 5.60125192683884 6.24838250891075 5.6958552502403 6.59706287806108 6.38887492824897 5.38919276222145 5.85110853850779 5.39241264144611 5.0334802658758 5.18286357836118 6.03896352877758 5.85233759374702 5.79973656294618 5.62136687495978 5.37421915000028 6.02029247670291 0.231216297117815 0.230436147259814 0.241680538615963 0.243697155879367 0.235921018661011 0.242303675996943 0.234098473983330 0.230943229841920 0.233057305245295 0.230436147259814 0.232335058905747 0.231431878197684 0.242183443100768 0.23385963755435 0.232044558711809 0.230436147259814 0.24450250122876 0.232078057478413 0.238857304086228 3 3|0 -|/ 10370832 10372057 10371378.9 10370536 10373675 - gene protein_coding_gene FALSE TRUE AT3G27930.1 similar to hypothetical protein MtrDRAFT_AC124951g14v1 [Medicago truncatula] (GB:ABE84845.1); similar to Os05g0577800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056409.1) -0.439092458552394 -4.24654053095489 0.00140718847014529 1 4.5221623660735 11.7886117417942 -0.439092458552394 0.105936062668243
AT4G15180_at 5.19561802507243 4.52569238606122 5.03167562159274 5.26608612270652 4.50523773760974 5.23690566295905 3.91761676635468 4.38924790770484 4.39195279163551 4.46031499216623 4.79150631086172 4.89579172934254 5.67145898256816 5.02138497084571 5.07641603763294 5.4712646894601 5.72842080261168 4.09984843134867 4.29616231174766 0.254935076811921 0.254935076811921 0.254935076811921 0.273685031116226 0.272284174399608 0.262055230736609 0.254935076811921 0.301629712112203 0.273726871069794 0.265424291143555 0.262486566885722 0.255583990672622 0.267577317347467 0.254935076811921 0.298048200243073 0.254935076811921 0.263473788389780 0.268090086367661 0.271623903950479 4 4 + 8661623 8661859 8661777.167 8651406 8662587 + gene protein_coding_gene FALSE TRUE AT4G15180.1 SET domain-containing protein similar to EFS (EARLY FLOWERING IN SHORT DAYS) [Arabidopsis thaliana] (TAIR:AT1G77300.2); similar to Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases (ISS) [Ostreococcus tauri] (GB:CAL55747.1); similar to Os08g0180100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061137.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) 0.607316988701428 4.24641631869053 0.00140748007021088 1 4.52198286750225 9.49717079184952 0.607316988701428 0.194370706745873
AT2G17700_at 5.46612859288265 5.77089022896971 5.84935018776314 5.42646288471795 5.94280164010733 5.74647561855143 5.18369600943715 5.6831227931628 5.03774582128231 4.82018742749226 5.64257329128523 5.59393976465951 5.70571588507073 5.60908963153872 5.69339142862388 5.49367768350363 5.9947782047355 5.19953536651536 4.76426282774831 0.187885199177744 0.176078937835238 0.180252337968505 0.176278163352629 0.180081817238640 0.185565148417208 0.176078937835238 0.178648894404394 0.185101422587538 0.185165171947425 0.179166471755324 0.180776895299769 0.179885272498933 0.178389066890363 0.179645866353362 0.176228188643200 0.177696108560232 0.187692593144306 0.184843760284535 2 2|0 -|/ 7692924 7693978 7693466.778 7692470 7696518 - gene protein_coding_gene FALSE TRUE AT2G17700.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35780.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G38470.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06436.1); similar to Protein kinase; Amino acid-binding ACT [Medicago truncatula] (GB:ABE89440.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06437.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.478917737411247 4.24507595458711 0.0014106307261822 1 4.52004575932155 10.8789425023653 0.478917737411247 0.129465748838042
AT3G54510_at 1.47301874770147 1.47524084345592 1.26697466334540 1.46018866005117 1.46522720363292 1.53688715166085 1.39787785190975 1.39115353745352 2.14575796315463 2.15008884467693 1.44515478877784 1.50095687089460 1.26147854217191 1.61234561982632 1.62124866339576 1.63295259322568 2.05747192498771 1.48766512228304 2.56617283054446 0.234871176480088 0.229657839654816 0.237409068488158 0.23428973311759 0.236177001424847 0.228723966397517 0.23066275984389 0.240219352582744 0.230845367920655 0.235114602350886 0.233808865853142 0.241268906190129 0.236044652527153 0.235084836003169 0.236141824247674 0.228753565924410 0.237207534519042 0.234043332916063 0.243021701595245 3 3|0 +|/ 20193480 20194109 20193759.2 20191270 20194487 + gene protein_coding_gene FALSE TRUE AT3G54510.1 early-responsive to dehydration protein-related / ERD protein-related similar to HYP1 (HYPOTHETICAL PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G01100.1); similar to Os01g0950900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045409.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE79158.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) -0.355966969610449 -4.24427280068691 0.0014125221513564 1 4.51888489774336 3.36569565497839 -0.355966969610449 0.0356832467573338
AT1G54920_at 6.29215814582807 5.9715285660541 6.20505312143541 6.15572477487613 7.18729552884513 6.60018081635062 6.75222885698648 6.32667156194469 5.36583943979486 5.29291891199596 6.22364469031864 6.15023774544628 6.42244623943007 6.20522903260547 5.96115525186001 6.17923671055738 6.07916183729834 6.23664913943463 5.53283625774822 0.185109822733636 0.186756590108107 0.193283019492186 0.199197163348884 0.192694243557406 0.197475986083636 0.187611245195557 0.185168029554815 0.203756374782341 0.190855430081194 0.190911371276366 0.183208653351292 0.196362145549624 0.192012228225348 0.192739005157608 0.185819648481925 0.183874157004662 0.208495546980453 0.188435633068909 1 1 + 20477024 20478016 20477620.727 20474487 20478825 + gene protein_coding_gene FALSE TRUE AT1G54920.1|AT1G54920.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91482.1) 0.493219327681331 4.24286905076716 0.00141583435131116 1 4.51685570427400 12.2260643135643 0.493219327681331 0.137471133969987
AT3G10670_at 9.65520110521728 9.64385006151853 9.29578342849644 9.15633248931768 9.22225749431181 9.32765650322157 10.2699937244691 10.1043130154240 9.57211863466188 9.71221982511083 9.61483256768881 9.70122932217282 9.5319518266667 9.40399448400432 9.51732415254174 9.50581815901184 9.50873215547943 9.5960070426159 9.51379388654468 0.108327018550714 0.106808905782767 0.111996822428703 0.107088074045566 0.10387338370172 0.108186481216664 0.105942272099980 0.105283779130250 0.114475622675445 0.103671783663881 0.108227936778326 0.104601808093420 0.105483888003761 0.117666129293803 0.10456206675947 0.103468306777325 0.108477864610736 0.105299450454080 0.107251594099452 3 3|0 -|/ 3335361 3336497 3335830.167 3335054 3337392 - gene protein_coding_gene FALSE TRUE AT3G10670.1 ATNAP7 (Arabidopsis thaliana non-intrinsic ABC protein 7) Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe?S clusters. Expressed in embryos and meristems. Identical to Non-intrinsic ABC protein 7, chloroplast precursor (AtNAP7) (ABC transporter ATPase) (Plastid SufC-like protein) (NAP7) [Arabidopsis Thaliana] (GB:Q9CAF5;GB:Q8LF74;GB:Q9LPN3;GB:Q9SG74); similar to ATNAP13 (EMBRYO DEFECTIVE 2751) [Arabidopsis thaliana] (TAIR:AT4G33460.1); similar to putative ABC transporter like ATPase [Trifolium pratense] (GB:BAE71292.1); contains InterPro domain FeS assembly ATPase SufC; (InterPro:IPR010230); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.359861616410055 -4.2392131129927 0.00142449885883372 1 4.51156940517563 19.1578553090196 -0.359861616410055 0.0417253632144998
AT1G09100_at 7.11679367175925 7.07209576498808 7.5916087573166 7.85912686112905 7.76239904419797 7.6151404423818 6.74451035411344 6.94060118857479 6.12122933445094 5.9071527146433 6.05221741906128 5.94706286463594 6.60067835708146 6.13632205502195 5.66501223310731 5.81965963652651 5.68715641559193 6.6379256051118 6.1119369408183 0.237152383209054 0.230210383482719 0.244932516813401 0.237160382364584 0.235528965255330 0.236293742153312 0.231659874623787 0.237991031505253 0.237435006898697 0.236611149602465 0.231444577008850 0.239718182482314 0.233611622607884 0.233270415638855 0.233625514000577 0.236606137573907 0.245726771106070 0.238839809867462 0.237497388083286 1 1|0 -|/ 2936903 2937757 2937351.8 2936530 2939328 - gene protein_coding_gene FALSE TRUE AT1G09100.1 RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B); ATPase/ calmodulin binding This subunit was shown to interact with the gene product of hexokinase1 (ATHXK1). This interaction, however, is solely restricted to the nucleus. Identical to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) [Arabidopsis Thaliana] (GB:O04019); similar to RPT5A (regulatory particle triple-A 5A), ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G05530.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABE80601.1); similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (GB:O23894); similar to Tat binding protein like protein [Brassica rapa] (GB:BAB21595.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.380024929013612 4.23874726584497 0.00142560688535617 1 4.51089566349085 13.39529817051 0.380024929013612 0.0632775862913915
AT3G54720_at 5.70614329457702 5.41411238090618 5.34697180638601 5.31918533667224 6.6659306145607 6.23013354391558 6.38845196329266 6.51585938266701 6.13204595109618 7.29488501654786 6.15353435888297 6.36916237699414 6.49907327583913 5.77934008240784 6.38135432543849 6.52431728755724 6.39037650451722 5.87325553323101 7.4803842216805 0.200041312516510 0.203978589848220 0.204176685573012 0.201875258117772 0.202165422828481 0.208895165662475 0.202124525506570 0.206921349079188 0.213404664413143 0.201385316448428 0.206595370335577 0.200041312516510 0.208287745658754 0.216505551378106 0.205574029409464 0.202891593022766 0.21622106760574 0.205219445396211 0.216767259104103 3 3|0 -|/ 20265929 20266749 20266356.889 20265703 20268826 - gene protein_coding_gene FALSE TRUE AT3G54720.1 AMP1 (ALTERED MERISTEM PROGRAM 1); dipeptidase Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. Identical to Probable glutamate carboxypeptidase 2 (EC 3.4.17.21) (Probable glutamate carboxypeptidase II) (AMP1) [Arabidopsis Thaliana] (GB:Q9M1S8); similar to peptidase M28 family protein [Arabidopsis thaliana] (TAIR:AT5G19740.1); similar to putative glutamate carboxypeptidase [Oryza sativa (japonica cultivar-group)] (GB:AAO24914.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase M28; (InterPro:IPR007484); contains InterPro domain Transferrin receptor-like dimerisation region; (InterPro:IPR007365) -0.419194887488378 -4.23817987010229 0.00142695766490793 1 4.51007500898134 12.5560519309805 -0.419194887488378 0.0935465517042524
AT4G17150_at 5.81290889382744 5.66541703316385 5.69988531041968 5.81473721346009 6.39144307971865 5.6868986176317 4.81054221390827 4.61391919856275 5.49628394126595 5.09299854655339 6.00071235002596 5.6304711247013 5.23547985564816 5.44907166125145 5.85597144525538 5.27349206290553 5.63450048946278 5.57193212389912 5.29132995995337 0.190573983094199 0.184734497259266 0.191103883809299 0.180513326032225 0.183479887911429 0.188878744817835 0.180072792295123 0.194621308984677 0.184351394550632 0.186619700517301 0.176792322190622 0.176937178429276 0.182655025270305 0.180827123021535 0.178053785336481 0.178061173391771 0.176792322190622 0.176792322190622 0.187289727779400 4 4|0 +|/ 9640430 9641634 9641020.5 9638185 9641790 + gene protein_coding_gene FALSE TRUE AT4G17150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14290.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23540.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); similar to Os06g0609700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058047.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.480230313497382 4.23786708419644 0.00142770287587473 1 4.50962258859367 10.9994646309539 0.480230313497382 0.130652067120639
AT4G19185_at 5.68913709432417 5.67394977099059 5.45541230334207 5.68015275867032 6.2867245262416 5.66655543689395 5.0176207236293 4.82506451379378 4.33181636737992 4.60427515910089 4.71436430890884 4.7101996668118 5.08935665342951 4.94690416426629 4.56726229497318 4.7119018356867 4.53291551829778 4.4317954074531 3.85773228060384 0.214964031435435 0.212300248611069 0.214645009744417 0.209288729238456 0.216443009815358 0.218672874966478 0.206779833150013 0.213001133448225 0.215949077761047 0.215651178082767 0.206883184052497 0.209813155005045 0.216977634386339 0.213005344944566 0.22305630725801 0.20883249310888 0.219292819758330 0.217677503050061 0.21617614446515 4 0|4 /|- 10489223 10489914 10489512.333 10489053 10491682 - gene protein_coding_gene FALSE TRUE AT4G19185.1 integral membrane family protein similar to nodulin-related / integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G45370.2); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE84659.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.459623888068021 4.23709236113657 0.00142955040312008 1 4.50850194619257 10.0256748494474 0.459623888068021 0.118946164559663
AT1G64200_at 4.62114316048344 5.05304475439773 3.95910630293059 3.8565324038604 3.96754970886125 3.94754370168764 5.89673550888458 5.96322380689373 4.64847125336989 6.36034847823506 6.49974623561504 6.58851524840872 6.70164075255583 6.31077246722636 6.1583938487349 6.51090081939518 5.26562649898286 6.00986488826481 5.78792062594109 0.275674732235302 0.257581475489332 0.266206013830284 0.272415941243769 0.257581475489332 0.270205113424766 0.257581475489332 0.263560692987296 0.275800495359156 0.263863581096927 0.257581475489332 0.257581475489332 0.260520368147354 0.272049846727705 0.257581475489332 0.26025635675865 0.261277791098481 0.265453300884578 0.257581475489332 1 1|0 -|/ 23832202 23832899 23832596.778 23832189 23833665 - gene protein_coding_gene FALSE TRUE AT1G64200.1 VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism similar to TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) [Arabidopsis thaliana] (TAIR:AT4G11150.1); similar to vacuolar ATPase subunit E-like protein [Thellun (GB:AAM19709.1); contains InterPro domain ATPase, V1/A1 complex, subunit E; (InterPro:IPR002842) -0.397042317973641 -4.23522193133970 0.00143402123959807 1 4.50579596882161 10.5854079422066 -0.397042317973641 0.0777555471870703
AT4G26190_at 4.92772380044578 5.23620061534703 4.8314606428817 5.09938460131549 4.83562860411354 5.16363737633586 4.88532916166918 5.10338294698668 5.20593319811888 5.16871756292465 4.12488117547976 4.8387010068994 4.26309555028691 4.01405269234075 4.9667135070385 4.67859122696811 4.79195726293513 4.55893131285646 5.60200663473348 0.178427528388279 0.179762377146699 0.190452082016735 0.195181018756330 0.177602064441639 0.180455277488782 0.173861421897398 0.183231073544066 0.181956548577247 0.179971820342047 0.185819403202215 0.186062320727874 0.185966502509239 0.190711223860048 0.178697089349984 0.176484884625484 0.182212277832847 0.179942674097526 0.186498186859796 4 0|4 /|- 13262491 13263503 13262880.286 13262245 13266975 - gene protein_coding_gene FALSE TRUE AT4G26190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to 36I5.7 [Oryza sativa (japonica cultivar-group)] (GB:AAM22488.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.425784161679447 -4.23421796463506 0.00143642702219976 1 4.50434329005054 9.93792743469172 -0.425784161679447 0.0982118990077505
AT4G35380_at 3.00079425932380 3.07426861044982 1.95324843307316 1.54556340123265 1.46135391076144 2.03013550993931 1.05823726773773 1.00062601131406 1.16158990731358 1.87709285398598 0.420106340852906 0.864502708828043 0.940341108227422 -0.0236852157202398 1.12204886270246 0.97479987568966 1.06148703518157 1.00883477225854 1.28095714555237 0.261999393015342 0.269454567757934 0.27083108400086 0.27037378145741 0.258739470258543 0.259573415055938 0.256214751052495 0.252972350129804 0.266349398399300 0.252862377819700 0.257869631424566 0.252862377819700 0.254431192071794 0.256776292776293 0.252862377819700 0.253249102819344 0.256254367149484 0.261079018219967 0.254887938887466 4 4 + 16825427 16825937 16825761.375 16819888 16826066 + gene protein_coding_gene FALSE TRUE AT4G35380.1 guanine nucleotide exchange family protein similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) -0.464865878201405 -4.23420588619274 0.00143645599117955 1 4.50432581231875 3.00849562795559 -0.464865878201405 0.122176731129644
AT4G37590_at 5.28250386089433 5.7252184759864 4.70168065249686 4.99676555743958 6.42967863278198 5.80333152478926 6.48470021410116 6.57993152682424 5.86483634178464 6.09498755533818 5.53725871649464 6.16586368664634 6.05012924006141 5.58033017683472 6.20138075473391 6.66582203465218 5.88002861320234 5.45520401024683 7.27683169415675 0.242527968804775 0.22439537206687 0.242652978453243 0.229168808680301 0.226557248195219 0.245703154713465 0.230017833401440 0.226751762287656 0.234843204119689 0.220330106485279 0.235901966056426 0.227306416077365 0.225462629449007 0.236622008263205 0.24433096106622 0.223036229808752 0.234539831959897 0.223395836953736 0.225475155540203 4 4 - 17663092 17663875 17663423.4 17662836 17666422 - gene protein_coding_gene FALSE TRUE AT4G37590.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT2G23050.1); similar to Os12g0583500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067147.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94544.1); similar to Os03g0609800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050649.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) -0.502720401946047 -4.23347426957607 0.00143821184299179 1 4.50326710683589 11.927586647932 -0.502720401946047 0.143170815927294
AT1G72630_at 7.2681410470365 7.96015672959954 6.95446608359042 7.2022246737004 8.57337107392248 8.28610343743542 7.17987439051189 6.52496077172436 6.90792282341065 6.684102197888 7.95693013161648 7.9996479044349 6.97909334913523 7.60623095600877 7.04065083582381 7.57794617385418 6.9353895570757 6.9093158033607 6.6775955705872 0.221086834786295 0.205371444659731 0.205371444659731 0.209255262572891 0.216034905634704 0.209874214246426 0.208364307755313 0.211916198033369 0.215694088434874 0.205757604598992 0.207665486893925 0.205371444659731 0.211223701405077 0.225564862272907 0.205371444659731 0.205371444659731 0.212834868983801 0.216465285720689 0.207783425614679 1 1 + 27348668 27348961 27348844.818 27347932 27349238 + gene protein_coding_gene FALSE TRUE AT1G72630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17455.1); similar to Os11g0621500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068300.1); similar to hypothetical protein [Oryza sativa] (GB:AAD27669.1); contains InterPro domain Protein of unknown function DUF1313; (InterPro:IPR009741) 0.569934237031274 4.23109681381133 0.00144393316003517 1 4.49982616755173 14.5597576690446 0.569934237031274 0.177472140710743
AT1G76570_at 7.28772484523428 6.98608872320199 6.99915489911555 7.22753497134465 7.55707579888464 7.11237006764053 8.520514804599 8.44255270888467 7.63318586513369 8.29895802386394 7.53917569515022 7.43851212142788 7.93229968681253 7.87050482482981 7.25934051024506 8.47495223627268 8.12859141228438 7.84704465667698 8.33330039541113 0.154359141185446 0.157772079480107 0.163692290638612 0.157207129559875 0.156411257500067 0.163357542460579 0.152085456374443 0.153219464238124 0.151753840908684 0.155758854938961 0.160042776997630 0.149321617375423 0.154329639817453 0.157899071892342 0.15019106973555 0.155179222510354 0.16499571768741 0.152555011645381 0.153607922725530 1 1 + 28734947 28735595 28735291.909 28734026 28735719 + gene protein_coding_gene FALSE TRUE AT1G76570.1 chlorophyll A-B binding family protein similar to LHCB2:4 (Photosystem II light harvesting complex gene 2.3), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G27690.1); similar to Os09g0296800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062801.1); similar to chloroplast Lhcq-like protein precursor [Ostreococcus tauri] (GB:AAY27551.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.431182560703728 -4.23092640550466 0.00144434415855089 1 4.4995794982601 15.4665191379125 -0.431182560703728 0.101938316950397
AT1G08960_at 3.5078416538344 3.80553295486019 3.66447203441324 3.40363585217272 3.59770423558551 3.77118089648201 3.53900387483143 3.81255416314971 3.2837333762264 3.25260347336915 4.01413160281905 4.38153660674554 4.0394211676016 4.23047438544797 4.26506769349 3.84516440477069 4.06164674696993 4.30781684924058 3.25785588478041 0.242334896320138 0.242102279167893 0.241165177032057 0.240015313736173 0.236306790695591 0.235758075588525 0.237436085351028 0.247143700311578 0.241590088052521 0.234553320099875 0.235024729337786 0.234881972228713 0.239831204830643 0.256101230357493 0.246927406034331 0.233163530892782 0.239829338017870 0.233163530892782 0.234064810170887 1 1 + 2881348 2881852 2881599.909 2879645 2882234 + gene protein_coding_gene FALSE TRUE AT1G08960.1 CAX11 (cation exchanger 11); cation:cation antiporter member of Potassium-dependent sodium-calcium exchanger like-family similar to cation exchanger, putative (CAX7) [Arabidopsis thaliana] (TAIR:AT5G17860.1); similar to Sodium/calcium exchanger membrane re (GB:ABD32390.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) 0.410720806835728 4.22596636923146 0.00145636075882609 1 4.49239776305960 7.34168487996331 0.410720806835728 0.0885085429176418
AT2G29130_at 1.11410289937472 0.996080149209314 1.86674720748331 1.58784928564757 1.17167192132306 1.59554238582359 1.37013722117894 1.16176808756876 1.76789029895667 1.57913379388136 2.35751124651437 0.941107457018155 1.92618142463286 2.38571665069436 2.04849736177147 2.39599978867347 3.35301722604955 2.313868127809 1.944320583476 0.196734619048439 0.197480654434922 0.199637832213479 0.198214806630458 0.198827518067319 0.204214974991951 0.206492868779045 0.196981501028482 0.201476319781519 0.196953769933365 0.225756667013372 0.197376088199645 0.203028457986448 0.204592474097425 0.203583485443041 0.195564010836484 0.200848339574737 0.205670924868652 0.207897089378041 2 2|0 -|/ 12532267 12532947 12532681.7 12531966 12534776 - gene protein_coding_gene FALSE TRUE AT2G29130.1 LAC2 (laccase 2); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to IRX12/LAC4 (laccase 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G38080.1); similar to LAC17 (laccase 17), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G60020.1); similar to LAC11 (laccase 11), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G03260.1); similar to laccase [Liriodendron tulipifera] (GB:AAB17194.1); similar to Copper-resistance protein CopA [Medicago truncatula] (GB:ABE85582.1); similar to Copper-resistance protein CopA [Medicago truncatula] (GB:ABE81993.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.423193231180252 4.22523279413183 0.00145814683416082 1 4.49133527907017 3.34749687928453 0.423193231180252 0.0970954319951383
AT1G55490_at 10.5547506482888 10.5919396235531 9.95857144104058 9.86785448179976 10.1570250142501 9.74332403741973 10.7975762153378 10.8636267658041 10.1506417372706 10.8895030797923 10.0829988026987 10.9773184194814 10.3411600791579 10.2005592336027 11.3199763185653 10.5152009882771 10.2849220418433 10.1796136202241 10.4631247359163 0.101067909947699 0.097387203129352 0.107689834431485 0.103986955171198 0.102183934988983 0.10575456542344 0.103448248785597 0.100382949237011 0.114824192367983 0.0974555199982452 0.0981488631535511 0.099222775629355 0.0983315947891878 0.106108312012356 0.098481038092497 0.097387203129352 0.104221105224426 0.099379238926274 0.0996704433926657 1 0|1 /|- 20719519 20720092 20719710 20719229 20722862 - gene protein_coding_gene FALSE TRUE AT1G55490.1|AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. Identical to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) [Arabidopsis Thaliana] (GB:P21240;GB:Q9SAV2); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P08927); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P21241); similar to chaperonin-60 beta subunit (GB:AAB39827.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.391825366315064 -4.22414366965704 0.00146080281073214 1 4.48975767522784 20.8112377979239 -0.391825366315064 0.0744585182378167
AT4G36800_at 7.97343753338513 8.46050052940365 8.74584623245067 8.89085748595637 9.39320397421153 8.6192068805298 9.27219619892404 8.87513734468853 7.76583686821069 7.97520444783568 9.26172451981379 8.86601578146404 8.88825188212481 8.91086735508759 9.00363718937884 9.24322217042573 8.58418396044125 8.28552005544133 8.32650595209613 0.181074444686112 0.175548301188000 0.176525180910483 0.174057450581051 0.170329339122544 0.184757122974530 0.175912623400069 0.177699157837780 0.191946618138958 0.176283917017866 0.174019297431898 0.176231423352118 0.177247259178435 0.179841915550353 0.17816530006469 0.171462567741 0.186121346231127 0.173260823936490 0.173429009999532 4 4|0 -|/ 17341533 17342092 17341830.75 17340955 17342736 - gene protein_coding_gene FALSE TRUE AT4G36800.1 RCE1 (RUB1 CONJUGATING ENZYME 1); small protein conjugating enzyme RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. Identical to NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-) (RUB1-conjugating enzyme 1) (RUB1-protein ligase 1) (RUB1 carrier protein 1) (RCE1) [Arabidopsis Thaliana] (GB:Q9SDY5;GB:O23202); similar to RUB1-conjugating enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G18600.1); similar to RUB1-conjugating enzyme-like protein [Solanum tuberosum] (GB:ABA46772.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.562436424955714 4.22273855011061 0.00146423685875424 1 4.48772207723646 17.2302700826035 0.562436424955714 0.174346528407515
AT4G36280_at 2.55325145549958 1.65206714868316 1.11906128452353 1.27578446078335 1.20873274639568 0.933857248282004 1.93236302683308 2.22575139318319 2.40578314124977 2.83561921117659 2.40438674306857 2.35581159554811 2.43214940184562 2.97156619218557 2.39157092459819 2.86408044633008 1.88648876920178 2.65087724582627 2.72993072352657 0.233656074521998 0.26202762769655 0.233656074521998 0.233656074521998 0.233656074521998 0.298428355659991 0.233656074521998 0.255909960175710 0.245379385563981 0.233656074521998 0.233656074521998 0.271008769381703 0.242843843885476 0.297295372893075 0.233656074521998 0.266370433441605 0.233656074521998 0.248708797538145 0.233656074521998 4 0 / Inf -Inf NA 17165334 17169378 - gene protein_coding_gene FALSE FALSE AT4G36280.1 ATP-binding region, ATPase-like domain-containing protein similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36270.1); similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36290.1); similar to Os10g0181700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064253.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK70637.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -0.559496965772864 -4.2225504036667 0.00146469732045854 1 4.4874494859443 4.18847231559453 -0.559496965772864 0.172909979971537
AT3G16340_at 2.97140623919081 2.93411311110987 3.80813212611117 3.7075365033496 3.73792757502276 3.39378445406852 3.87614521025569 4.09470750992021 3.02366369049091 3.65226052157985 4.34074757918215 4.68570944895008 3.84114230996909 4.2398479146152 4.27925252220347 4.56662166279331 4.09036224407725 3.96645179888594 4.31728340639312 0.240365721689552 0.225630034896678 0.236175180254462 0.231529880274552 0.223919160791278 0.227038943884134 0.233867182964484 0.224548074141354 0.239835373874580 0.227949364303798 0.238991755238453 0.227132648012079 0.233596839949781 0.223919160791278 0.230307887813374 0.223919160791278 0.227618307246016 0.235684118527907 0.225198417486785 3 3|0 +|/ 5545518 5546245 5545872.7 5539903 5546423 + gene protein_coding_gene FALSE TRUE AT3G16340.1 ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1); ATPase, coupled to transmembrane movement of substances Identical to Pleiotropic drug resistance protein 1 (PDR1) [Arabidopsis Thaliana] (GB:Q94A18;GB:O04323); similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G59870.1); similar to ATPDR6/PDR6 (PLEIOTROPIC DRUG RESISTANCE 6), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G36380.1); similar to ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15210.1); similar to pleiotropic drug resistance like protein [Nicotiana tabacum] (GB:BAB92011.1); similar to Pleiotropic drug resistance protein TUR2 (Protein Turion 2) (GB:O24367); similar to Pleiotropic drug resistance protein 1 (NtPDR1) (GB:Q76CU2); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Pleiotropic drug resistance protein PDR; (InterPro:IPR005285); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.389808271307736 4.22246142567232 0.00146491513419424 1 4.48732057047036 7.52330382841484 0.389808271307736 0.0729532093093951
AT1G04750_at 9.21113003039977 9.36694646187998 9.51402134860331 9.5089616042267 9.4669449114655 9.08936511378945 8.75220018779948 8.6376213718558 8.5433356767466 8.57301535072552 9.04915130916457 9.31795230041396 8.73269947901268 9.02764803734248 9.17542585001737 8.77083952789604 8.48528171914121 8.80868862892192 8.51306481208156 0.116919205201051 0.120018284086254 0.120233997884965 0.122416714239583 0.117605572034977 0.122990954746874 0.114744848393033 0.121461691250541 0.125744310251911 0.113305847366159 0.117008198078740 0.11641647306566 0.124163997655839 0.126190127135708 0.123444559247613 0.119042238389336 0.123436716914039 0.12738926230423 0.118006864369149 1 1|0 -|/ 1331863 1332676 1332158 1331465 1333566 - gene protein_coding_gene FALSE TRUE AT1G04750.1|AT1G04750.2 VAMP7B (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B) vesicle-associated membrane protein 7B (At VAMP7B) mRNA, Identical to Vesicle-associated membrane protein 721 (AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B) (VAMP721) [Arabidopsis Thaliana] (GB:Q9ZTW3;GB:O23011;GB:Q9MAS4); similar to SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G33120.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.390335487420847 4.22194614374302 0.00146617718505775 1 4.48657398168401 17.9254486135892 0.390335487420847 0.0734207065035775
AT1G77770_at 6.84410774200443 7.01673946539533 6.89619789183082 7.03823020906747 7.07469458113254 6.75637543230852 5.83264745833728 6.27612690642254 6.47116026542428 6.05939211601146 6.33910281340617 6.77034912887091 6.5002032777884 6.59528575889227 6.31140710456345 6.71744711654666 6.10295015514808 6.66922007405305 5.73639419434826 0.192714055405030 0.193764948549749 0.187417831859471 0.192222977502091 0.197162401306711 0.185247720404207 0.194303115350837 0.187406339610595 0.185574532944690 0.186483451385401 0.19094530776046 0.187186465188307 0.189548427458384 0.187142625766282 0.188873452813254 0.193696093268293 0.188536970540266 0.193043677111061 0.192367513691165 1 1 - 29251375 29251905 29251625.091 29250968 29252922 - gene protein_coding_gene FALSE TRUE AT1G77770.1|AT1G77770.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08460.2); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.430366311137783 4.22069655626726 0.00146924245246614 1 4.48476329035025 13.0117538961057 0.430366311137783 0.102084063514689
AT1G71860_at 9.29469241678161 9.30783030816847 9.72191580736917 9.66869602629825 9.97976823570996 9.7689720841039 9.19203416602456 9.10925635530054 8.81876329970331 8.76530091180174 9.06184742434094 8.87766597795837 9.14338641481618 8.70135975597617 8.83411838108894 9.1463599645244 9.07323919884814 8.77146317345824 8.80306394729925 0.119103212633255 0.119821379325534 0.116623030351981 0.118407303013267 0.119051652042941 0.117629516385994 0.118928327967238 0.120337358330336 0.121912165720041 0.118801732568260 0.116532352642558 0.116532352642558 0.116532352642558 0.123503082147298 0.121318055499945 0.120066218627537 0.121091035684415 0.118305426739481 0.12249498325625 1 1|0 +|/ 27031211 27032126 27031757.3 27030373 27032754 + gene protein_coding_gene FALSE TRUE AT1G71860.1|AT1G71860.2|AT1G71860.3 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. similar to protein tyrosine phosphatase [Fagus sylvatica] (GB:CAJ77612.1); contains InterPro domain Tyrosine specific protein phosphatase; (InterPro:IPR000242); contains InterPro domain Protein tyrosine phosphatase, catalytic region; (InterPro:IPR003595); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387)|similar to protein tyrosine phosphatase [Fagus sylvatica] (GB:CAJ77612.1); contains InterPro domain Tyrosine specific protein phosphatase; (InterPro:IPR000242) 0.357177688454927 4.22000028708474 0.00147095332326858 1 4.48375426901324 18.3788403862918 0.357177688454927 0.0403229000417514
AT3G61380_at 2.84106222473467 2.99225535582586 2.72213065402081 3.31054367451279 3.43839881176369 3.37181720675416 2.93066978801333 2.71677444195413 3.2877330729395 3.6052857513272 4.29656176973662 3.91867613226066 3.72387247281027 4.5411442140974 4.18017701796328 3.96632749410709 3.78498598607448 4.4534748179882 3.77560106594246 0.186514380920109 0.185745884428290 0.194299509834152 0.189705926457325 0.192434977435521 0.196199845061795 0.197817614906247 0.186446734920368 0.198562973192881 0.187410459293837 0.190954381282080 0.188668328455253 0.192635425877578 0.195306230093496 0.194875490801495 0.191926536505368 0.192058969564164 0.189586339656200 0.185745884428290 3 3 - 22719756 22720223 22720016.182 22719457 22722254 - gene protein_coding_gene FALSE TRUE AT3G61380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32828.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) 0.446238996095448 4.21996789747108 0.00147103296162677 1 4.48370732870396 6.87263607879717 0.446238996095448 0.112055209952952
AT2G31060_at 7.04567990922433 7.46779221802538 7.35249669393431 7.62811180567517 5.61830940880171 5.77939812492934 6.44227003809711 6.3784844011416 4.99211966643878 5.15719296612682 4.14899867372356 4.61988305450494 4.58104373466154 4.49874085786369 4.34346424154869 4.44998546684476 4.87495974152515 4.10028869827534 4.98283389626093 0.303799233944001 0.306808594168235 0.305674348227687 0.304505544231308 0.293103887519389 0.305193748526393 0.300730119694609 0.31179741235289 0.299224198284819 0.293103887519389 0.296494419576782 0.294006516554919 0.300775996414474 0.300423446281918 0.301032421491077 0.293103887519389 0.293641382484147 0.295867200520058 0.293103887519389 2 2|0 -|/ 13220944 13222107 13221577.556 13220249 13225662 - gene protein_coding_gene FALSE TRUE AT2G31060.1|AT2G31060.2 elongation factor family protein|GTP binding / translation elongation factor similar to elongation factor family protein [Arabidopsis thaliana] (TAIR:AT5G13650.2); similar to Os01g0752700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044268.1); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE80513.1); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795)|similar to elongation factor family protein [Arabidopsis thaliana] (TAIR:AT5G13650.2); similar to Os01g0752700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044268.1); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE80513.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain GTP-binding protein TypA; (InterPro:IPR006298); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.415427958805346 -4.21923801901366 0.00147282875507670 1 4.48264951666072 11.4621775257589 -0.415427958805346 0.092249770488333
AT3G07890_at 6.85350377667253 6.71182514247644 6.1544557473515 6.40946020357629 7.15953047136447 6.44411081037593 6.47775769292832 6.14613645976547 4.82765269269614 4.68361242633955 5.43461535781056 5.975756096846 5.8666102829347 6.12139269199347 5.84259214801484 6.01297658982283 6.09228803077952 5.21807305013193 4.90192124906617 0.239216830592828 0.228357830428585 0.23931430083296 0.235988518359306 0.235783249294973 0.229764533731971 0.236726393024989 0.235596728056552 0.237916353004525 0.230467029121614 0.229757133616897 0.228357830428585 0.228544444176288 0.243695529934560 0.228556748678172 0.229723598227584 0.231679738707505 0.235450555171143 0.233472566257833 3 3|0 -|/ 2516889 2517547 2517182.667 2516310 2519381 - gene protein_coding_gene FALSE TRUE AT3G07890.1|AT3G07890.2 RabGAP/TBC domain-containing protein|RAB GTPase activator similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39280.1); similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55020.1); similar to hypothetical protein DDBDRAFT_0202560 [Dictyostelium discoideum AX4] (GB:XP_643668.1); similar to Os08g0337700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061581.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.505363057607066 4.21892119340618 0.00147360898628672 1 4.48219031584384 11.8570642816017 0.505363057607066 0.145499565788113
AT3G60690_at 9.19713461641232 9.6688047497456 9.97698888340912 10.0121670395055 10.4187489681914 9.74708129751284 9.77487680444188 9.6912215239335 7.91515812789639 8.59830874019524 8.56340859481 7.69801009855144 8.99223872458068 8.92473477250713 7.48865135024724 9.42201196049893 9.32164397889174 8.44005746688653 7.67096652426795 0.147871682207874 0.150883182375362 0.150146652075607 0.152749026900843 0.152045788098416 0.15659857164827 0.152357687381948 0.150499837230460 0.178607353738309 0.147926431553772 0.147871682207874 0.149404821414690 0.149963885924191 0.151064763848247 0.163004823211207 0.150495807107797 0.149216911377926 0.164639004215507 0.158622093870229 3 3 + 22446312 22446714 22446493.545 22446096 22446924 + gene protein_coding_gene FALSE TRUE AT3G60690.1 auxin-responsive family protein similar to auxin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G45210.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); similar to Os04g0537100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053425.1); similar to OSJNBa0091D06.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03018.3); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.500301972219947 4.21739939274686 0.00147736267913685 1 4.47998443010475 18.1447891933065 0.500301972219947 0.142898088467571
AT2G36170_at 9.46111488085391 9.7190013816576 9.05362278813791 9.27451940147388 9.3653264569049 9.20234915864607 9.68261746561063 9.7488953054258 9.41440505790356 9.27933481246043 8.97528613089758 9.4192633754106 8.88420863025241 8.77588558470575 9.61162375143964 8.8175924885058 8.74154488984103 8.57844676973882 9.23340455623509 0.120334933504053 0.120624263559914 0.121594604096104 0.121846830540669 0.118437462267087 0.117568335815265 0.124300446173311 0.119539294963286 0.121394630917996 0.120045219427976 0.116415318842378 0.115655382658061 0.122790385481092 0.117724276091356 0.125258277581223 0.123820594953706 0.125024458231617 0.127728483057631 0.122372696648360 2 2|0 +|/ 15179246 15179980 15179621.889 15179173 15180359 + gene protein_coding_gene FALSE TRUE AT2G36170.1 ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 60S ribosomal protein L40 (CEP52) (UBQ2) [Arabidopsis Thaliana] (GB:P19232;GB:Q9S7X3); similar to UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT3G52590.1); similar to ubiquitin fusion protein [Arachis hypogaea] (GB:AAZ20285.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein L40e; (InterPro:IPR001975) -0.381259748348513 -4.21642382948869 0.00147977427306896 1 4.47857013876082 18.5806956522382 -0.381259748348513 0.0661818399000498
AT1G21610_at 6.22799634883669 6.3424828246451 5.50463522972517 5.29995561536039 6.0732651379657 6.10128252302669 5.35732690229608 4.89908874985732 5.87458043770767 5.34079815293016 4.87489860644287 4.68976848428062 4.85582874398836 4.96064898805469 4.17289962961897 4.61995422280563 4.82727662096283 4.92686653848539 5.58657907579612 0.252017457780142 0.248834689773042 0.246657372682924 0.249855308038448 0.247111242587512 0.251631131874814 0.244548619267914 0.254840744587532 0.255113631088380 0.255516539834936 0.244548619267914 0.244548619267914 0.244548619267914 0.26481912747193 0.247820907018985 0.251338061174624 0.264913800463488 0.244548619267914 0.244548619267914 1 1 + 7578081 7578608 7578425.545 7573911 7578945 + gene protein_coding_gene FALSE TRUE AT1G21610.1|AT1G21610.2 wound-responsive family protein similar to wound-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G77310.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAV24767.1); contains domain UBINUCLEIN/YEMANUCLEIN (PTHR16426) -0.410786953018687 -4.21636789688736 0.00147991266323448 1 4.47848904779066 10.8965893088681 -0.410786953018687 0.0892143496842534
AT2G41740_at 7.44388107508283 7.63375317374939 7.68260032693553 7.79226013170471 7.95720889139004 7.78047136189665 7.82724265651188 7.783083134749 7.949197280014 7.83692675713796 9.12169851400074 8.41657529929243 8.6707790705491 8.45879426932557 8.35060699231021 8.40509803469593 7.98449970452942 8.53243538042087 7.89995585402078 0.155659704202796 0.155069055370467 0.157797383796746 0.154817789037517 0.159173899483179 0.163411047347738 0.151883129715887 0.153991327251571 0.176519531008405 0.160461760924989 0.152503033049114 0.151795415695057 0.158625193028846 0.162372257473040 0.155449124845382 0.154317603342781 0.160865369118044 0.170993312805321 0.156850984069336 2 2|0 -|/ 17418081 17418760 17418511.7 17417793 17424818 - gene protein_coding_gene FALSE TRUE AT2G41740.1 VLN2 (VILLIN 2); actin binding Encodes a protein with high homology to animal villin. Identical to Villin-2 (VLN2) [Arabidopsis Thaliana] (GB:O81644;GB:O22946;GB:Q8RXZ3); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN3 (VILLIN 3), actin binding [Arabidopsis thaliana] (TAIR:AT3G57410.1); similar to VLN4 (ARABIDOPSIS THALIANA VILLIN 4), actin binding [Arabidopsis thaliana] (TAIR:AT4G30160.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96040.1); similar to actin bundling protein ABP135 [Lilium lon (GB:AAD54660.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96039.1); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Villin headpiece; (InterPro:IPR003128) 0.364173056187374 4.21616110150295 0.00148042444025068 1 4.47818923204382 15.9315230299349 0.364173056187374 0.0493320857748849
AT4G10810_at 7.86036168766525 8.1130834981722 8.17323212442849 8.44712562960214 8.413415538815 8.29055094356359 8.0291608494549 8.2756631493791 7.69897262744972 7.40606707415077 8.13765000436772 7.97332636791556 8.00313669452331 8.06450301686625 8.08824181144992 8.00740827901307 7.99388256429643 7.77524899451882 7.30522695870256 0.170020160741643 0.165997415484808 0.164308618692414 0.168320582199924 0.167570591814483 0.166686788876753 0.170023234372369 0.161265139750555 0.185615956760816 0.178850502611538 0.171070984416481 0.161489234345298 0.176237580219285 0.179982091166499 0.170823319789125 0.166298898067481 0.175613278036072 0.175351344115835 0.18215281562681 4 4 - 6645982 6646172 6646101 6645712 6646332 - gene protein_coding_gene FALSE TRUE AT4G10810.1 similar to Os10g0502100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064990.1); similar to Os02g0826400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048586.1) 0.39842479639282 4.21613545901838 0.00148048791313942 1 4.47815205463525 15.9380809793284 0.39842479639282 0.0801945578642283
AT4G26780_at 4.12407952199211 4.02291473583481 4.20855686589471 4.32383190072455 3.19695494025959 3.41376902855277 4.55148513888736 5.10882818511196 3.18766053392149 4.08022080735646 3.27585420735422 3.53776503054892 2.83594837507371 3.28924306421918 3.5011631913372 4.00497454537877 3.7508679923042 3.33952317966118 3.68400665134028 0.189614854545809 0.190710684000875 0.18669662178129 0.189816167012456 0.187603240196544 0.186769928091024 0.188125160700669 0.193442609916307 0.188146385471294 0.184111991205055 0.193121403134461 0.184111991205055 0.195698514668939 0.188031976033057 0.184111991205055 0.184111991205055 0.187838176550303 0.191451720385425 0.187270513158017 4 4|0 -|/ 13485107 13485881 13485458.1 13484845 13486777 - gene protein_coding_gene FALSE TRUE AT4G26780.1 AR192; adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization unknown function similar to co-chaperone grpE protein, putative [Arabidopsis thaliana] (TAIR:AT5G55200.1); similar to chaperone GrpE type 2 [Nicotiana tabacum] (GB:AAC72387.1); contains InterPro domain GrpE protein, head; (InterPro:IPR009012); contains InterPro domain GrpE protein; (InterPro:IPR000740) -0.437380297118364 -4.21604766090071 0.00148070526152866 1 4.47802476095034 7.66507592921094 -0.437380297118364 0.106841077440638
AT4G33030_at 9.36616330932193 9.74723015721342 8.72682091310596 9.03011887801802 9.19181162525408 8.7199600794978 9.12330197915225 9.57780808040337 9.50126628914795 9.51369883075908 8.82614171591334 9.2134494358281 9.00253048245558 9.18684633094172 9.38481753194608 9.2220973031458 8.19524501709091 8.94571032869601 9.34797518102826 0.146141147879873 0.143369239133190 0.150761790611562 0.145912128272011 0.146851013432951 0.149427744653381 0.149227649013121 0.145915408871173 0.156415919462431 0.141313627157454 0.148543960169837 0.144363939692715 0.146908841020955 0.142039112713321 0.145913774621526 0.143247463718589 0.167183752763334 0.152289438825749 0.146825235026390 4 4 + 15936910 15937508 15937240.273 15935419 15937810 + gene protein_coding_gene FALSE TRUE AT4G33030.1 SQD1 (sulfoquinovosyldiacylglycerol 1); UDPsulfoquinovose synthase involved in sulfolipid biosynthesis Identical to UDP-sulfoquinovose synthase, chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SQD1) [Arabidopsis Thaliana] (GB:O48917); similar to Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose (GB:1I2B); similar to Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose (GB:1QRR); similar to Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose (GB:1I24); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.496828336473335 -4.21361724149691 0.00148673514152711 1 4.47450055316825 18.4111109786945 -0.496828336473335 0.141272533849431
AT1G72220_at 3.40254658068206 3.39460325656430 3.83034844331898 3.76388995305326 3.22680848192791 3.54485033819939 2.64522250486253 3.04572150583648 3.03976040364759 3.29419983525753 3.70704299887434 3.41435884785948 3.2636020619547 2.77772402535246 3.63325021488991 3.31754190239014 4.14132619998323 3.57179755491755 3.04872805179334 0.207614089784644 0.207614089784644 0.216333324702511 0.217527679217487 0.211480795741393 0.210955554809796 0.211679798753706 0.22604662094159 0.215538037977904 0.207614089784644 0.219769040306639 0.208076888803201 0.214702098552270 0.218444842578146 0.207916644584598 0.216073858512924 0.210045794399525 0.207801572012711 0.211235032978489 1 1 - 27188050 27188615 27188357.455 27187943 27189492 - gene protein_coding_gene FALSE TRUE AT1G72220.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1O (RING-H2 finger protein ATL11) (ATL1O) [Arabidopsis Thaliana] (GB:Q8LFY8;GB:Q9C7T3); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G10380.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE85148.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.410109277175057 4.20877315317777 0.00149883003950994 1 4.46747368981405 6.65969550272755 0.410109277175057 0.0892582839825844
AT1G02180_at 2.17481005526891 2.47261629906068 1.24368004296158 1.31447799170891 2.03093703534207 1.95068464532143 2.75366939819929 3.11297390394320 2.56653006615712 2.91304686103099 3.09168967216547 3.32813588581772 2.85212393194938 2.8514892836001 2.90538081028816 2.20331578835776 2.23558601631640 3.30602720984521 2.48615970314591 0.216663646584262 0.220914608080613 0.227617126236011 0.223028225074999 0.224938204870772 0.227309854517754 0.224652475945314 0.222146665411041 0.216663646584262 0.219922748413242 0.221782278006508 0.222809992851053 0.223688198448066 0.219628538751913 0.217327886200923 0.216663646584262 0.220670194313693 0.222786009758262 0.228713885127866 1 1 - 413672 414127 413901.091 413522 414645 - gene protein_coding_gene FALSE TRUE AT1G02180.1 ferredoxin-related similar to Os08g0459300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061973.1); similar to Os02g0834300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048640.1); contains domain PR-1-like (SSF55797) -0.401049726968336 -4.20649276205098 0.00150455936849983 1 4.4641644805352 4.88271323059436 -0.401049726968336 0.0828570626470533
AT2G24280_at 7.86019775387995 7.97236082669088 8.28950336118333 8.0996296452368 8.12167976334918 7.98671139192884 9.0184659646579 8.71637516344304 7.97924144512274 8.45446283291417 7.49246981414248 7.50284828754327 7.91747184143247 7.8008706265106 7.07162487850108 8.2591454919331 8.3566248387465 7.6937387834736 8.34949235230978 0.153066315647554 0.155514366387661 0.155082359283139 0.158541476960639 0.155646706079839 0.155961268744256 0.158413495999627 0.157516137663196 0.156579592355907 0.164130408412553 0.160606730821292 0.155371574590091 0.162944594171223 0.157769457725096 0.162550242793960 0.152236391665904 0.158589008947387 0.166169245455538 0.152917484178265 2 2 + 10342921 10343875 10343304 10340364 10344196 + gene protein_coding_gene FALSE TRUE AT2G24280.1 serine carboxypeptidase S28 family protein similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT5G65760.1); similar to Os01g0767100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044360.1); similar to Os06g0647400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058206.1); similar to PREDICTED: similar to an (GB:XP_214993.2); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S28; (InterPro:IPR008758) -0.383342554953458 -4.20602775639164 0.00150573047124629 1 4.46348958461034 16.2695729156634 -0.383342554953458 0.068811351570052
AT1G57620_at 5.7293970902421 6.04693350377603 5.66276214135149 5.91559223546224 6.2835452916899 5.94547840825257 5.63387547081409 5.68574192810712 4.22147199396498 3.87745567580839 4.84525114969785 5.16028372534188 4.38658117805625 4.54904031122949 5.06654334289973 4.53223549745305 4.49279835691209 4.31658736972985 3.95944846249113 0.304308532134880 0.29374701457068 0.296267385494527 0.29014301948049 0.300589793679584 0.297539898585621 0.296221033067306 0.303950798648625 0.301917322702674 0.29014301948049 0.291331988741803 0.294068322574815 0.294219900359606 0.293039652715516 0.29014301948049 0.29014301948049 0.304685704473937 0.29038618491222 0.292542558971513 1 1 + 21346574 21348174 21347148.091 21346386 21348469 + gene protein_coding_gene FALSE TRUE AT1G57620.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G09580.1); similar to Os06g0210100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057112.1); similar to emp24 protein [Hyacinthus orientalis] (GB:AAT08688.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.413531963307202 4.20578596700812 0.00150633978701093 1 4.46313864516828 10.2069776722969 0.413531963307202 0.0918546666982114
AT1G70200_at 7.85573226182178 8.24895896521473 7.14782698751421 7.05743759466368 7.76294768673554 7.52572572103199 8.22239969980131 7.8374486737896 8.18123064809876 9.00180502961825 8.6172686866452 9.20221084345594 8.15697763787211 8.42496249165337 8.65762926426698 8.66055695153336 8.1840974234909 7.67509092221938 8.75513229971925 0.179090949555494 0.174016550370033 0.180107658106555 0.176989941487248 0.176089195789704 0.171821301173077 0.174460707710732 0.184446117971772 0.195338139930201 0.176401106942456 0.178944626564246 0.176614439130019 0.171821301173077 0.176148459941223 0.178370839231069 0.173950753563226 0.183650964262561 0.185540084824754 0.187291110848938 1 1 - 26436344 26436841 26436625.545 26435960 26438063 - gene protein_coding_gene FALSE TRUE AT1G70200.1 RNA recognition motif (RRM)-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os02g0326200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046705.1); similar to RNA recognition motif (RRM)-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15694.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.433178558753547 -4.20555861747796 0.00150691294905817 1 4.46280865584461 16.2540123338821 -0.433178558753547 0.104874415404488
AT2G37770_at 3.18621397906863 3.22794922000543 5.05900998730652 5.65406194724215 3.49345787871844 3.30939433124536 3.78647475701682 4.18622832502402 2.54691907639639 3.20698634595637 2.72959483504307 2.44423535069253 2.96456879053753 2.87320308178174 3.00524293199984 3.42207229925797 3.67783444381172 3.24179521787467 2.89324598603873 0.249759229105435 0.251346105276643 0.262981679085962 0.266959519427240 0.253580216219311 0.253478678535284 0.250754125181091 0.252892280224210 0.263631862794958 0.259753173270794 0.255473163244333 0.269089136941445 0.270119890301694 0.270180207583578 0.261597463842319 0.252356144282178 0.254772721663706 0.248251014930716 0.264953236288251 2 2|0 +|/ 15842718 15843494 15843157.778 15841961 15844079 + gene protein_coding_gene FALSE TRUE AT2G37770.1|AT2G37770.2 aldo/keto reductase family protein|oxidoreductase similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT2G37790.1); similar to aldose reductase [Di (GB:CAC32834.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.472349515963556 4.20539990865601 0.00150731319879643 1 4.46257829119044 6.95144988903944 0.472349515963556 0.128283704097768
AT3G47570_at 5.23445459963255 5.40961165630144 4.64936328931654 4.29548627392652 4.54270176382226 4.42005511877177 4.15965284278725 4.11239269948455 5.47059754178836 4.73012669861302 4.26514003537479 4.7945341457065 4.46042616797563 4.58056858219887 4.31344877616753 4.59074227679006 4.26294487651949 4.69069558471196 4.84938187935734 0.198611386713652 0.213921038021322 0.206751511874825 0.193407932549538 0.196875998851648 0.212273773046406 0.193407932549538 0.20268178836844 0.2015251999655 0.197045970575904 0.206545653585060 0.197245105779047 0.196746043195156 0.198508910421472 0.198442201445779 0.200112891724502 0.203932073745483 0.202000674093897 0.19700321366143 3 3|0 +|/ 17541055 17541611 17541365.4 17538492 17541914 + gene protein_coding_gene FALSE TRUE AT3G47570.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to EFR (EF-TU RECEPTOR), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G20480.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47580.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91397.1); similar to Leucine Rich Repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99894.1); similar to putative protein kinase Xa21 [Oryza sativa (japonica cultivar-group)] (GB:BAB03627.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.387007911165571 -4.20444589909281 0.00150972146998150 1 4.46119347130932 9.35872207830545 -0.387007911165571 0.0720174956663451
AT3G59840_at 6.93942355616814 7.13481220415628 5.83676031990278 5.96144796026107 6.23094498443801 6.62814255133984 6.4354603440316 7.18134911304381 6.55937886355479 6.45073834510264 6.12439503170549 6.45950165219441 6.01353277022883 6.41601954912319 6.46269622512027 6.55459553185453 6.50741860313006 6.343204203542 6.88584078998003 0.167162394309489 0.177447557576639 0.185959882295827 0.173669344640908 0.168613755627446 0.180049062335634 0.171212173837025 0.181523324294683 0.180157314039401 0.175261570443468 0.182590935333519 0.166698346041207 0.177596238279465 0.171807023228623 0.171178534613785 0.169885359516674 0.185476916801034 0.170005674441913 0.166698346041207 3 3 - 22116841 22117098 22116967.818 22116499 22117175 - gene protein_coding_gene FALSE TRUE AT3G59840.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93068.1) -0.515126452024002 -4.20328149291227 0.00151266631078345 1 4.45950305319823 13.0396208518718 -0.515126452024002 0.151641680215617
AT3G50000_at 8.97699851495864 8.9866666144555 8.86510640117038 8.99125967187308 9.18674504233966 9.08298187416496 8.45309024537259 8.79395032277357 8.61673991834473 8.47279565418238 9.41779080414237 9.26587770119144 9.00388298809318 9.22212887994594 9.06181470619554 9.03902339722768 9.00159682399411 8.8910973322885 8.6607017265987 0.128269231253110 0.12687985714588 0.129024284905314 0.130138519283077 0.128338549749660 0.128235958566827 0.130233506877535 0.127253614119292 0.137531155695872 0.148910991865492 0.126080418761097 0.12065224091641 0.123355510787029 0.123630893769428 0.130268827201156 0.126499700072075 0.12832136697895 0.133191354076840 0.134396344597836 3 0|3 /|+ 18546642 18547669 18546977.25 18545442 18547953 + gene protein_coding_gene FALSE TRUE AT3G50000.1 CKA2 (casein kinase II alpha chain 2); kinase casein kinase II catalytic subunit alpha Identical to Casein kinase II subunit alpha-2 (EC 2.7.11.1) (CK II) (CKA2) [Arabidopsis Thaliana] (GB:Q08466;GB:Q9SN18); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to casein kinase II alpha chain, putative [Arabidopsis thaliana] (TAIR:AT2G23080.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82533.1); similar to protein kinase CK2 alpha subunit [Nicotiana tabacum] (GB:CAD26882.1); similar to protein kinase CK2 alpha chain [Nicotiana tabacum] (GB:CAD27342.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.379167984544928 4.20262263588047 0.00151433525191160 1 4.45854646936148 17.7652568419769 0.379167984544928 0.0654321737298626
AT1G14400_at 10.9896569947842 11.0231075768227 11.1283601519756 11.0837442166193 11.6472064389511 11.4051889185046 10.7836879578987 10.7362006992741 10.7634348354821 10.4568628567001 10.8632500369130 10.8764069870276 11.0414015307001 11.037156572566 10.8380616818531 10.9256842387036 10.7316786253043 10.8737845731022 10.6239369559783 0.0908923651097392 0.0875489648902779 0.0931999937866982 0.0926366979011337 0.089930520031604 0.0949944539355282 0.0875489648902779 0.0896158908553962 0.0946166312256852 0.0902750513900616 0.0919936643276905 0.0910137421894595 0.0875489648902779 0.0931370072558366 0.0893224752343833 0.0875987667375703 0.093196545374367 0.090396137586456 0.087965066129262 1 1|0 -|/ 4927366 4928107 4927766.25 4927006 4928656 - gene protein_coding_gene FALSE TRUE AT1G14400.1|AT1G14400.2 UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase ubiquitin carrier protein Identical to Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 2) (Ubiquitin carrier protein 2) (UBC2) [Arabidopsis Thaliana] (GB:P42745); Identical to Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC 6.3.2.19) (Ubiquitin- protein ligase 1) (Ubiquitin carrier protein 1) (UBC1) [Arabidopsis Thaliana] (GB:P25865); similar to ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G02760.1); similar to ubiquitin carrier-like protein [Solanum tuberosum] (GB:ABC01903.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.358322386184383 4.20249455928059 0.00151465990424189 1 4.45836050922397 21.8562305760995 0.358322386184383 0.043758213371993
AT1G19940_at 1.10304288816500 1.56592175845173 1.47248382900934 1.51241253452312 1.17540934614706 1.51433432892259 3.07122621218680 2.99287871265289 3.00673210832187 2.66840441658917 3.35003563416444 3.20862804543941 2.35198995799501 2.89711087245940 3.04175149805481 1.92963390250885 1.92222472113478 2.14908265114831 2.40559507612127 0.225268354821206 0.229083569777938 0.226221681623296 0.224695898245155 0.227494919468260 0.236009755110131 0.224813831388901 0.229201641273977 0.235068653606459 0.229548363161275 0.221985979807374 0.228270075915516 0.227850073909476 0.227398144535110 0.229323877371777 0.232841964835082 0.229040105888864 0.237596332355208 0.224168777306370 1 1 - 6918319 6919005 6918684.455 6918182 6920368 - gene protein_coding_gene FALSE TRUE AT1G19940.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) [Arabidopsis Thaliana] (GB:Q9FXI9;GB:Q9LNS3); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G75680.1); similar to Os06g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058583.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE81087.1); similar to Os09g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063771.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -0.425938711597277 -4.20207831648363 0.00151571551120359 1 4.45775613017921 4.45090588161093 -0.425938711597277 0.100440250742994
AT2G31305_at 3.70423283493287 3.65529200445539 3.93659975563341 4.10468585057604 4.49688254934779 3.98904731047883 4.11025706444197 4.12470315894863 3.23908721262092 3.03003396395574 3.88361640036102 4.03509245569319 3.45946562433103 3.73879425554613 3.70618827187074 3.9877660451949 3.20424842148697 3.65177370259128 3.06751014339379 0.208210176499676 0.206130375638515 0.214096270562293 0.21605086202741 0.205497330705234 0.214602563949676 0.2066272470364 0.206204645097018 0.221939533600331 0.210566297140708 0.212309743838361 0.212480086582223 0.211075667797578 0.209038155196282 0.202306924969408 0.215833851701250 0.210421589577264 0.202578696777094 0.212968500573131 2 2 + 13357987 13358285 13358120.455 13357499 13358541 + gene protein_coding_gene FALSE TRUE AT2G31305.1 similar to hypothetical protein DDBDRAFT_0190820 [Dictyostelium discoideum AX4] (GB:XP_646558.1); similar to Os05g0270400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055058.1); contains InterPro domain Protein phosphatase inhibitor; (InterPro:IPR011107) 0.41467015397928 4.20060136109999 0.00151946733297966 1 4.45561139415870 7.42550185966415 0.41467015397928 0.0929922821950432
AT1G43890_at 8.8540802373274 8.98947932978547 8.90538505022658 8.88242959215283 9.6234130300458 8.9578185690308 8.80726348448787 8.75177577731841 8.16235784593404 7.950480836123 9.08059120019014 8.78350555237937 8.72682564067223 9.03675497301922 8.53213770651547 8.89616169354843 7.69674997243613 8.58872925856283 7.89130468068532 0.205284232251717 0.194510774821383 0.204320628634608 0.201662759460018 0.205342906736802 0.211528570113025 0.205187945152756 0.201176239263201 0.213599373161340 0.205074796862222 0.195196100807961 0.198123099812114 0.194179575883354 0.191302575942354 0.201314900006020 0.195038982873468 0.219791261750001 0.215184561731359 0.20689262562999 1 1 + 16649449 16650739 16650133.364 16649172 16651088 + gene protein_coding_gene FALSE TRUE AT1G43890.1|AT1G43890.2 ATRAB18 (Arabidopsis Rab GTPase homolog C1); GTP binding|ATRAB18 (Arabidopsis Rab GTPase homolog C1) ras-related small GTPase similar to ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G03530.1); similar to RAB1Y [Lotus japonicus] (GB:CAA98164.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.453956365942788 4.19954989261976 0.00152214422951890 1 4.45408431622889 17.3059871940867 0.453956365942788 0.118001804187721
AT2G04270_at 5.86060270920154 5.81229982154198 5.09336983334142 5.33230488235639 6.18919093502816 5.82013391003827 6.34681028502542 6.07147694181503 5.58821323273051 5.54454878255295 4.64358709413491 5.34232980248514 5.47381769470928 5.09254316085711 5.3782243963235 5.65607650152202 5.71814600451649 4.43458447128033 5.73983784729736 0.201063131456756 0.190502202205145 0.201414552011830 0.19862266196573 0.187931543395048 0.190263959723086 0.191882231642855 0.197053503447042 0.195067943279307 0.193406182036235 0.187931543395048 0.188827194555353 0.193520659539172 0.188882435331392 0.200521819658646 0.190568659853487 0.202432478490277 0.204134718986658 0.196369765816007 2 2|0 +|/ 1478222 1479386 1478883.2 1474676 1480583 + gene protein_coding_gene FALSE TRUE AT2G04270.1|AT2G04270.2|AT2G04270.3|AT2G04270.4 glycoside hydrolase starch-binding domain-containing protein similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Glycoside hydrolase, starch-binding; (InterPro:IPR002044); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659)|similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Glycoside hydrolase, starch-binding; (InterPro:IPR002044); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659)|similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659)|similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659) -0.41041693133497 -4.19879465374333 0.00152407000679293 1 4.45298735560023 11.2365804622546 -0.41041693133497 0.0901604275908344
AT4G15920_at 8.90476134496394 9.26081782528603 9.45457939717007 9.57362250792072 9.66730445855888 9.5107455653064 10.3974627710484 10.4764347829522 8.44788366485906 9.82068516846633 10.4453021276854 10.0051238017547 10.1091939573622 10.2183307419778 9.99869271048357 10.1996535346561 10.2855055042507 10.1479086128833 9.3188793237974 0.112454877976438 0.104850296602120 0.103784502819270 0.103660552971676 0.103231353512940 0.107162565111768 0.103622683824086 0.105765102382215 0.141133026578423 0.105968369278410 0.104266421017911 0.106688029472159 0.104048446326300 0.111649738907324 0.112807040031251 0.104536391051341 0.115408840450437 0.118736106628043 0.103648493763283 4 0|4 /|- 9030770 9032454 9031860.75 9030531 9033409 - gene protein_coding_gene FALSE TRUE AT4G15920.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT3G16690.1); similar to MtN3/saliva family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95863.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.386045811341905 4.19805922431442 0.0015259477192996 1 4.45191908285126 19.3417310447788 0.386045811341905 0.0717070423241123
AT4G25970_at 9.5133483213707 9.48619234261283 9.28111487913475 9.17781655248174 9.94648071609973 9.56127905477969 8.7712946487594 8.5949822695631 8.71591774795874 8.61129050088626 9.06309332434317 8.749985920582 9.1988584764885 9.16512957169387 9.21508210564724 9.07272562656597 8.85922973247862 9.2163072568117 8.73109414078637 0.134057175825659 0.137887960357585 0.145941165958115 0.143614510484093 0.143190114441441 0.139948059687187 0.139328366600962 0.139225943008450 0.137664005911282 0.142398213326163 0.141775192896375 0.136406035780695 0.136908071313352 0.134057175825659 0.136031577926508 0.137828558356063 0.142970187999555 0.134057175825659 0.135415685146076 4 0|4 /|+ 13188025 13189103 13188520.429 13185739 13189444 + gene protein_coding_gene FALSE TRUE AT4G25970.1 PSD2 (Phosphatidylserine decarboxylase 2) phosphatidylserine decarboxylase 2 (PSD2) similar to phosphatidylserine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT5G57190.1); similar to phosphatidylserine decarboxylase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87120.1); contains InterPro domain Phosphatidylserine decarboxylase-related; (InterPro:IPR003817); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Phosphatidylserine decarboxylase; (InterPro:IPR005221) 0.390834555165032 4.19804578897592 0.00152598204514284 1 4.45189956612113 18.1683897472853 0.390834555165032 0.075606148024782
AT3G52180_at 9.18158052163052 9.11243503440589 9.09742013413214 9.04823546417617 9.21785468536753 8.94458568351628 9.10725206105209 8.95404699347035 7.59333098664265 8.94682420407974 9.13600403218835 8.90443843087824 9.10296184007656 9.24629399592788 9.12100799251323 8.59819165389936 8.74565888278694 9.04340868309143 8.17247334506948 0.120700602283020 0.118909041388151 0.119596045751913 0.128431981841876 0.121518645890982 0.128496887190532 0.123354102807789 0.119001230148818 0.140405809565270 0.118909041388151 0.126672867213665 0.123658420589612 0.119276762364090 0.125172175094909 0.128760754919733 0.121596352972309 0.131168369271466 0.128791833874394 0.130292935268622 3 3|0 -|/ 19360919 19362515 19361459.333 19360630 19364574 - gene protein_coding_gene FALSE TRUE AT3G52180.1|AT3G52180.2 SEX4 (STARCH-EXCESS 4); oxidoreductase/ polysaccharide binding / protein tyrosine/serine/threonine phosphatase|SEX4 (STARCH-EXCESS 4); protein tyrosine/serine/threonine phosphatase Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. similar to protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G10940.1); similar to protein tyrosine phosphatase-like [Solanum tuberosum] (GB:ABB87109.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387)|similar to protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G10940.1); similar to protein tyrosine phosphatase [Solanum lycopersicum] (GB:CAC44460.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.368949091407303 4.19751598895621 0.00152733627068087 1 4.45112993439816 17.6953205893110 0.368949091407303 0.0561689614874605
AT4G19830_at 6.04166942806928 6.61790536322903 6.00421398119172 6.10600570868833 6.70763488354318 6.23066233735256 7.8051766159652 7.96451752317373 7.94054790671813 7.72823088555251 7.7537452518456 7.67539049752224 7.56372366855273 8.04985247747134 7.5821444603993 8.10564971051368 6.98706710386088 7.80591578940448 7.74927356504078 0.184926327545213 0.160010851290244 0.172309202167434 0.167283757230141 0.167338059532425 0.175884931848324 0.160416495655752 0.169427471742382 0.165349831636091 0.161105936250662 0.160010851290244 0.162522617607533 0.164512388016614 0.172589285574088 0.174313689167053 0.160010851290244 0.180330389487010 0.163878015088057 0.164186812993489 4 4|0 -|/ 10772628 10773682 10773196.4 10772441 10774033 - gene protein_coding_gene FALSE TRUE AT4G19830.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT5G13410.1); similar to peptidylprolyl isomerase, FKBP-type family protein [Musa acuminata] (GB:ABF70026.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.480384668703111 -4.1939648292064 0.00153644589934416 1 4.44597010439602 14.4329500163433 -0.480384668703111 0.133521709843171
AT1G67950_at 3.33894259206958 3.6066807772946 2.62838563651149 2.54323966173920 2.77180301763343 2.59658815935382 4.37354763295203 4.17076345800696 3.86142412662573 4.01630839870276 4.81832921641121 5.24621571844174 3.87389021637001 4.69194995473443 4.96085291407215 3.90111061322259 2.72363608550067 4.30597068292561 3.63768626183883 0.224089739046133 0.219278642543453 0.221819333803859 0.221959371543783 0.222494507474522 0.225094839506043 0.221543694437114 0.224707999106131 0.225595694769173 0.229095396690198 0.221898148824103 0.234625828605567 0.221041777825737 0.220229688824087 0.234104050310531 0.218886550857497 0.235794213522819 0.231029909583377 0.220365370643275 1 0|1 /|- 25482548 25483162 25482831.667 25482376 25484243 - gene protein_coding_gene FALSE TRUE AT1G67950.1|AT1G67950.2|AT1G67950.3|AT1G67950.4 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to Os03g0713600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051073.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD65610.1); similar to Os04g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053727.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to Os03g0713600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051073.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD65610.1); similar to Os04g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053727.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G17720.1); similar to Os03g0713600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051073.1); similar to putative RNA recognition motif (RRM)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67779.1); similar to Os04g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053727.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G17720.1); similar to RRM-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98537.1); similar to Os03g0713600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051073.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) -0.38035400005864 -4.19372061919446 0.00153707444319125 1 4.44561519607099 7.33060254407792 -0.38035400005864 0.0671923016056042
AT2G37500_at 6.052899905292 5.94703739868534 5.67953063498982 5.44127089931781 5.78508319866695 5.40297811181212 7.01271569400063 6.94567184442001 5.27804618928393 6.42789044022582 6.28478853797649 6.51672190490396 6.11035104076442 5.71987497964625 6.37229415980841 6.36824428885545 6.03012193490169 5.72210894161759 6.3617374720554 0.229338383668816 0.222967485573164 0.229367033063484 0.228787927808014 0.229932993520378 0.243589164580635 0.227649383506990 0.240165413235612 0.237005866447487 0.223886516013777 0.22697544704696 0.228212868012132 0.224756097394093 0.241569450632819 0.228047084528175 0.225236278704473 0.236299612651451 0.237580364131360 0.227116911798597 2 2|0 -|/ 15747324 15747896 15747633.25 15746861 15749916 - gene protein_coding_gene FALSE TRUE AT2G37500.1 arginine biosynthesis protein ArgJ family similar to glutamate N-acetyltransferase [Citrullus lanatus] (GB:BAE46903.1); contains InterPro domain Arginine biosynthesis protein ArgJ; (InterPro:IPR002813) -0.397180154849292 -4.19333796075693 0.00153805986384195 1 4.44505906332853 12.1149590896053 -0.397180154849292 0.0808877838269688
ATCG00270_at 10.4010306776456 10.8436722664722 11.641395175902 10.9494463391542 11.8225496298587 10.4935366304894 11.7000865017928 11.2631614127443 11.4214557793179 10.9110746266473 12.5277633367108 12.9155066421230 12.9217982298058 12.4362075033118 12.0272100476444 12.4156577310664 12.0553789444141 12.2618804648696 10.7843969654362 0.115021171325818 0.110592372459527 0.112226185458158 0.112643529917579 0.110379886160834 0.12254414277075 0.113786135940728 0.112873314312537 0.112391383058444 0.119771904055563 0.114624345572816 0.110220366749984 0.110641222055811 0.113647979905879 0.116001141237744 0.11086120231688 0.114401549927294 0.114604271118705 0.123991339470898 C C + 33173 33697 33379.778 32711 33772 + gene protein_coding_gene FALSE TRUE ATCG00270.1 PSII D2 protein Identical to Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) (psbD) [Arabidopsis Thaliana] (GB:P56761); similar to photosystem II protein D2 [Spinacia oleracea] (GB:NP_054928.1); similar to photosystem II protein D2 [Nandina domestica] (GB:YP_740645.1); similar to photosystem II protein D2 [Glycine max] (GB:YP_538760.1); contains InterPro domain Photosynthetic reaction centre protein; (InterPro:IPR000484); contains InterPro domain Photosystem II reaction centre protein PsbD/D2; (InterPro:IPR005868) 0.790471900606703 4.1929658002157 0.00153901888363249 1 4.44451816593122 22.8814354057376 0.790471900606703 0.280749064677476
AT3G62230_at 1.59003450158050 1.12280413475320 1.52133906233529 1.37426829028905 1.23852469185084 1.23493440910618 1.48487182818071 1.34687742406832 3.71758311461948 1.41362792927974 1.63564714607064 1.38408046050312 1.38901152954755 1.26569986222403 1.23385198892434 1.14673905367075 1.4576108355862 1.50429437335958 1.30925082795878 0.213224878914681 0.214004744374926 0.222440068310056 0.220747715686276 0.219431466240076 0.216536761441754 0.217430549514232 0.216063045254714 0.241609134087399 0.212614842346824 0.219837257111113 0.224339284024463 0.218985737724022 0.217280255928925 0.215528787321363 0.212573269361877 0.220350004454728 0.214910279660999 0.227677875122602 3 3 + 23043364 23043897 23043599.818 23042506 23044103 + gene protein_coding_gene FALSE TRUE AT3G62230.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G54820.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85825.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.406792038233613 -4.19187475483145 0.0015418339993486 1 4.44293231962268 3.12617555786473 -0.406792038233613 0.0880692464558882
AT3G61240_at 8.04183242855155 8.01513574092346 8.30342650591893 8.20204903843766 8.2895977226934 8.12693152518505 8.16387713711001 7.88413793480373 7.13108268745938 7.56130840512242 7.92781873308733 7.98358194457388 7.90626693943526 7.90822981131836 7.98665003409241 8.13564270719333 8.03478405021603 7.88746978605795 7.60882225145146 0.145540730803165 0.140563315222657 0.143332447874895 0.150745360403255 0.141874905901222 0.148702540303321 0.142145009724546 0.147814270125413 0.150279317947461 0.148286832600790 0.152949913922739 0.145434233939052 0.153261155101852 0.143104366659572 0.147933128922893 0.143365786400761 0.153675385692774 0.141199985172812 0.148920462805771 3 3|0 +|/ 22679206 22679904 22679434.333 22677158 22680732 + gene protein_coding_gene FALSE TRUE AT3G61240.1|AT3G61240.2 DEAD/DEAH box helicase, putative (RH12) Identical to DEAD-box ATP-dependent RNA helicase 12 (EC 3.6.1.-) (RH12) [Arabidopsis Thaliana] (GB:Q9M2E0;GB:Q9ZS08); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT2G45810.1); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G00660.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84720.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84723.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84719.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.370911553556986 4.18904592834015 0.00154915802907768 1 4.43881973503586 15.8308951452486 0.370911553556986 0.0588651530460342
AT2G37470_at 6.54736476141156 6.82578079947847 6.78052901795732 6.70949020521138 6.8555429820546 6.78753739859945 7.84722157417584 7.92795356103973 6.92679684745907 7.43931738689843 7.21438846935455 7.2321286351896 6.62988447919501 6.92295264737002 7.31059064024955 7.28668782442524 6.84907376794206 6.49302641714561 7.28997978222403 0.191558766288601 0.193097521342374 0.190283610487965 0.193721021272626 0.200745060373436 0.200161302370265 0.193618969865168 0.205394153815524 0.193446092680728 0.191824104746871 0.193332172199390 0.194536510992197 0.192199868054783 0.204299393401627 0.194571263282556 0.193415728763431 0.19488034550638 0.194647435771027 0.190283610487965 2 2 + 15743945 15744299 15744157.273 15743842 15744446 + gene protein_coding_gene FALSE TRUE AT2G37470.1 histone H2B, putative Identical to Histone H2B.4 (HTB5) [Arabidopsis Thaliana] (GB:Q9ZUS0); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G53650.1); similar to Probable histone H2B.3 (GB:Q1SU99); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.365080834244464 -4.18839861164874 0.00155083908281449 1 4.4378784843279 14.1406973453091 -0.365080834244464 0.052974069593078
AT2G21340_at 8.35515505444864 8.1601236835292 7.76314343888757 7.73661670807057 8.4103565143346 8.20510445780429 8.96483296248745 8.79115678843449 8.31447755331747 8.84365710093358 8.5012048027364 8.48657817358371 8.25647868155008 8.1835194195137 8.630269662642 8.6741706733382 8.41373514124465 8.3715338651884 8.76079810413341 0.147839148590529 0.149099068423187 0.151745837155779 0.147136829857134 0.141561605587967 0.155464410457925 0.146737992948632 0.141925086513939 0.160483797103645 0.143784487877446 0.152732627519412 0.142494093474366 0.14256831407425 0.152087536889724 0.145632889137225 0.140816710006532 0.151822016947257 0.153087661162809 0.145440626582203 2 2|0 +|/ 9142346 9143243 9142785.444 9139638 9143539 + gene protein_coding_gene FALSE TRUE AT2G21340.1|AT2G21340.2 enhanced disease susceptibility protein, putative / salicylic acid induction deficient protein, putative similar to EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT4G39030.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88792.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88798.1); similar to expressed protein [Medicago truncatula] (GB:ABE88794.1); contains domain DNA-DAMAGE-INDUCIBLE PROTEIN F (PTHR11206:SF3); contains domain MULTIDRUG RESISTANCE PUMP (PTHR11206)|similar to EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT4G39030.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88792.1); similar to expressed protein [Medicago truncatula] (GB:ABE88794.1); contains domain DNA-DAMAGE-INDUCIBLE PROTEIN F (PTHR11206:SF3); contains domain MULTIDRUG RESISTANCE PUMP (PTHR11206) -0.369484896385435 -4.18668871422518 0.00155528878707006 1 4.43539184522411 16.8379764786343 -0.369484896385435 0.0576645362652761
AT1G05070_at 7.55435906679123 7.90212286445754 7.63654055729508 7.71024912900752 7.53809869830992 7.91023884048317 8.08563329715822 8.65687959374992 8.13893178834606 8.01592961787768 7.57345145896454 7.11119707049547 7.77304183924624 7.59201169025975 7.17870272057939 7.63895289977491 7.4276044974311 7.23828954155495 7.98885861321443 0.194254643109105 0.191005273095811 0.189505365446536 0.189505365446536 0.204104162354657 0.204426142773495 0.195880868310475 0.195887625211055 0.197449949450704 0.203269949241857 0.193652653168733 0.192831400199277 0.201592002750332 0.202834310107897 0.190566182512214 0.189505365446536 0.215235785700837 0.205774391358216 0.197425479641325 1 1|0 -|/ 1457200 1458499 1457958 1457062 1458742 - gene protein_coding_gene FALSE TRUE AT1G05070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32580.1); similar to unknown protein [Phytophthora sojae] (GB:AAO24648.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) -0.478608553811535 -4.18569757446682 0.00155787415773334 1 4.43395026219824 15.6190468248738 -0.478608553811535 0.133059032334286
AT4G32530_at 9.5793100966719 9.56968574619126 9.82284653934196 9.891059884602 9.99596240292144 9.51953027275224 9.59642590236008 9.60823561009848 9.13063127300289 9.10536750714257 9.70853911912848 9.74955185140857 9.76637883444685 9.6507340632049 9.78238260592778 9.30910523462322 9.6453979600039 9.57301357053318 8.96761748753147 0.140840900301719 0.143313390419817 0.150205511305292 0.145866089177017 0.147422931220024 0.1535244897262 0.141408822051594 0.149253015759425 0.171541009144570 0.157025252645093 0.143448888929489 0.142641580809171 0.14557258154565 0.153946314463242 0.151769605607834 0.150997225230679 0.147596281464986 0.161367940412941 0.161973078045298 4 4|0 -|/ 15693410 15694928 15694315.4 15693120 15695077 - gene protein_coding_gene FALSE TRUE AT4G32530.1 vacuolar ATP synthase, putative / V-ATPase, putative similar to H+-transporting two-sector ATPase, C subunit family protein [Arabidopsis thaliana] (TAIR:AT2G25610.1); similar to vacuolar membrane ATPase subunit c'' [Citrus limon] (GB:AAO73433.1); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379) 0.399600625878972 4.18463000916186 0.00156066390689365 1 4.43239735147723 19.0558870539350 0.399600625878972 0.0833312982535992
AT2G44380_at 4.41855501164165 5.31321413103387 3.81219313462429 3.36537384726127 2.31030250137767 2.72995737589742 2.20117045602233 2.43599442081561 3.23241838596657 1.95745687829668 1.58617002073971 1.50836083576506 1.63979361367788 1.79714759970148 1.40855506200120 1.81832464632379 1.99819895250204 2.2853848329529 2.02333572492933 0.265427098334811 0.25315547075929 0.247382435963307 0.273852418652238 0.252019322854578 0.24170493467961 0.245532017200921 0.240511684382488 0.242047987675895 0.246660024072107 0.240511684382488 0.248884515809334 0.240511684382488 0.244851358737733 0.245483602651774 0.240511684382488 0.240511684382488 0.243990324392459 0.240511684382488 2 2 - 18330692 18331202 18330926 18330537 18331504 - gene protein_coding_gene FALSE TRUE AT2G44380.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43520.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21314.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.593469253847195 -4.18374196747542 0.0015629885037961 1 4.43110544737758 5.40316791409537 -0.593469253847195 0.192029468371433
AT1G29250_at 8.96970600541436 8.98903847763338 8.79095310736645 8.8537448975726 8.74315905534595 8.46922822090952 9.4221717994702 9.59740985430961 8.34000103916573 8.24708682723196 7.79498177192027 8.19844263563304 7.88880900645096 8.24545335646243 8.73102775387988 8.21916419228504 7.74289993188075 7.94878172479084 8.32273764303347 0.132876143929080 0.121356651451383 0.116530556578019 0.125707625025679 0.122864857994659 0.123939137840627 0.124217994338058 0.125664090830877 0.129069891709944 0.119950559175670 0.120983602943055 0.116530556578019 0.131049465125857 0.125744308916831 0.120565900037784 0.118433019056190 0.127611576350308 0.126493543764704 0.119883113492408 1 1|0 -|/ 10223453 10224522 10223836.556 10223252 10224713 - gene protein_coding_gene FALSE TRUE AT1G29250.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G34160.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15498.1); similar to Os06g0602600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058008.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) -0.368695168527868 -4.18060629808852 0.00157122562061875 1 4.4265427730395 17.1791615354894 -0.368695168527868 0.0574121806762481
AT2G33570_at 2.26291518005036 2.77387054345826 1.34033343789394 2.09151901081328 1.36740389218602 1.39763536151352 3.98008519884049 4.1039013388445 3.38912834418118 3.92981184550676 5.68768657772796 5.25316588978144 3.7398133861408 4.42101809928012 5.13351182912445 4.33531880645737 3.1922117136633 4.14941949627184 4.1108310428359 0.274256649626822 0.275288473482306 0.272389894682148 0.293468656990604 0.275721819920637 0.274578898126331 0.281979024492566 0.276321260142136 0.271855766750054 0.275149373645704 0.286097220809321 0.275796234117049 0.273355831815022 0.271736222526163 0.278394683084946 0.272741063663225 0.277611314062505 0.271736222526163 0.271736222526163 2 2 + 14225383 14225973 14225584.545 14224299 14226328 + gene protein_coding_gene FALSE TRUE AT2G33570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44670.1); similar to Os06g0328800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057533.1); similar to Os02g0712500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047907.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72474.1); contains InterPro domain Protein of unknown function DUF23; (InterPro:IPR008166) -0.525937829532709 -4.17998950554421 0.00157285120933748 1 4.42564510799078 6.56417897994031 -0.525937829532709 0.158758157239059
AT1G68530_at 11.1600606973408 11.3201968367444 11.6849079975117 11.6981251020453 12.2760761172380 11.7316741422961 11.7572885906524 11.7449383341551 11.8461015508405 11.6640998417414 12.3610235989826 12.1012150186893 12.3012235364771 12.2804526727670 11.8185000625380 12.0588233357290 11.9388991222476 12.3299929896241 11.4700472596557 0.107446506125254 0.101609889999690 0.102664183044517 0.107431811159441 0.104889345892341 0.116111078896587 0.101416717293208 0.104230703907319 0.114105806483732 0.102611036169501 0.102208147571687 0.0999821430022464 0.100200410493894 0.102704807177167 0.100580795075599 0.0999821430022464 0.10449633261506 0.103908462228199 0.103828033115926 1 1 - 25716576 25717445 25716927.182 25716251 25718470 - gene protein_coding_gene FALSE TRUE AT1G68530.1|AT1G68530.2 CUT1 (CUTICULAR 1); acyltransferase involved in wax biosynthesis; required for elongation of C24 very-long-chain fatty acids Identical to 3-ketoacyl-CoA synthase 6 (EC 2.3.1.-) (KCS-6) (Very-long-chain fatty acid condensing enzyme 6) (VLCFA condensing enzyme 6) (Cuticular protein 1) (CUT1) [Arabidopsis Thaliana] (GB:Q9XF43;GB:Q56ZC4;GB:Q8VYJ5); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G25450.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93245.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328)|Identical to 3-ketoacyl-CoA synthase 6 (EC 2.3.1.-) (KCS-6) (Very-long-chain fatty acid condensing enzyme 6) (VLCFA condensing enzyme 6) (Cuticular protein 1) (CUT1) [Arabidopsis Thaliana] (GB:Q9XF43;GB:Q56ZC4;GB:Q8VYJ5); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G25450.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601) 0.420379066551141 4.17986189500046 0.00157318775285538 1 4.4254593793806 23.5760830653535 0.420379066551141 0.098252433344835
AT2G26070_at 6.32496833968362 6.3506114584 6.38359795904755 5.99507847832335 7.06450850562233 7.21030119763074 5.99370279630929 6.22631524502507 6.54900912962568 6.34867460002205 7.06837216509402 7.13730429635055 6.73279008973158 6.56355399212 7.23281824836725 6.8730447202274 6.69095375481225 6.55217460428962 6.60285163080702 0.203955979576794 0.210324441789246 0.203955979576794 0.212437356444346 0.206051802515732 0.210062953997012 0.214381956487175 0.215574991915330 0.215695011223217 0.221213465085532 0.216118442722748 0.209454519626367 0.209308711950495 0.218519729278303 0.211597524220517 0.207087629837714 0.224585762074354 0.209134032701809 0.214548032741899 2 2 - 11112854 11113504 11113175 11112750 11114266 - gene protein_coding_gene FALSE TRUE AT2G26070.1 RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) Encodes a predicted membrane protein. Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes. The sequence has no known motifs and no biological function has been assigned in any species. In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene. similar to RTH (RTE1-HOMOLOG) [Arabidopsis thaliana] (TAIR:AT3G51040.3); similar to green ripe-like 1 [Lycopersicon esculentum] (GB:ABD34616.1); contains InterPro domain Protein of unknown function DUF778; (InterPro:IPR008496) 0.397835052845334 4.17852819457947 0.00157670958684401 1 4.42351811808385 13.1219129661847 0.397835052845334 0.0824454316530152
AT1G21580_at 4.46326213209495 3.55841419580223 5.25500303612521 4.55838036119582 5.34309733490283 4.24741796348916 4.34530000357806 3.88954696453103 3.98688570704612 4.71677696198161 4.64099229153393 5.60296037183642 6.17415670085928 4.74892712907505 4.46747927533259 5.73865166543983 4.8655707219708 3.98017612100879 3.95451371748479 0.248158841820007 0.243682709100954 0.248722866907922 0.258297856956285 0.256830986430955 0.260447265284817 0.246647751565235 0.261993390229483 0.258660129669626 0.245944774399078 0.243682709100954 0.253539321285392 0.243682709100954 0.249134509218249 0.252019541925598 0.249535539034642 0.267831160869334 0.260574579229797 0.246561436710036 1 1 - 7560569 7561034 7560833.182 7560554 7565792 - gene protein_coding_gene FALSE TRUE AT1G21580.1 hydroxyproline-rich glycoprotein family protein similar to Subtilisin-like serine protease [Pediococcus pentosaceus ATCC 25745] (GB:YP_803612.1); contains domain TPR-like (SSF48452) 0.797408002860637 4.17808081730178 0.00157789279703253 1 4.42286687909018 9.0809309556997 0.797408002860637 0.285002540881774
AT1G45688_at 7.59722770426505 7.84353518298909 7.41682859165296 7.47542386028973 7.65350344122098 7.56781894961433 9.00535812932447 8.87701466304756 8.66984480444512 8.56744746914627 9.12744799760696 8.87123632745125 8.61556307983698 8.71610720607781 8.77309101881966 8.44038022214681 8.09481256946674 8.7870733091543 8.5654869276712 0.117386505431125 0.110730481027888 0.121594051673022 0.116459688682837 0.114630057953007 0.113553785521045 0.113815397052119 0.113435859991785 0.126451996920773 0.113542742958878 0.110198857168097 0.112745129510449 0.110198857168097 0.115024625793802 0.114493980951165 0.112467705385903 0.117356673926796 0.112425572527959 0.111083145572779 1 1 + 17194377 17195286 17194941.636 17193840 17195598 + gene protein_coding_gene FALSE TRUE AT1G45688.1|AT1G45688.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42860.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to CAA30379.1 protein [Oryza sativa] (GB:CAB53482.1) -0.362551321656422 -4.17693662757439 0.00158092313806061 1 4.42120116319294 16.569158998671 -0.362551321656422 0.0513114102535657
AT1G59760_at 5.84592055198306 6.3119459767836 5.72137163683434 5.88034093325273 5.95495165519866 6.11844861645011 6.26484749056105 6.29501405035549 5.69321009194484 6.098225043519 5.52279942416892 5.38745065027872 5.11205388446304 5.28873650782694 6.00191526864409 5.49758118654035 5.544125288081 5.47981431717865 6.31207761186653 0.195895022486398 0.20022166498681 0.190746404250114 0.192611513529473 0.190746404250114 0.196355868827216 0.191556477974499 0.203179479488594 0.198781337452044 0.190795109106073 0.200842614536722 0.197202969783091 0.196105448736847 0.196277340181248 0.193189913584298 0.197842786462312 0.206315878185484 0.201294534790691 0.202530597644631 1 1 - 21988246 21988732 21988575.455 21988110 21993840 - gene protein_coding_gene FALSE TRUE AT1G59760.1 ATP-dependent RNA helicase, putative similar to HEN2 (HUA ENHANCER 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT2G06990.1); similar to PREDICTED: similar to Superkiller viralicidic activity 2-like 2 isoform 1 [Canis familiaris] (GB:XP_849676.1); similar to KIAA0052 protein [synthetic construct] (GB:AAX29888.1); similar to PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2 [Pan troglodytes] (GB:XP_001145794.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.407924245099626 -4.17652457550735 0.0015820159300468 1 4.42060124701244 11.8060120214313 -0.407924245099626 0.0899371949768184
AT1G09140_at 7.77241533462333 7.23204988723371 8.61687682244618 8.60754619405503 8.78769729631256 8.25688184440172 8.44191996300833 8.04140578970128 7.14396429177197 7.34653875002075 7.80408857477958 6.98425893594681 8.00284168485861 7.69117469223346 7.8043109583766 8.20828391073633 8.29067640805949 7.9432420096818 8.08574565231704 0.197862548604254 0.195549500760350 0.189760936004490 0.193302263116630 0.197199518705319 0.192214250815066 0.196647759809291 0.189760936004490 0.203024180355440 0.202143402174323 0.198381854614659 0.196718996196126 0.195717130079961 0.193809029752148 0.193524306447254 0.198226425446176 0.192441295176842 0.195353926642576 0.190277514395098 1 0|1 /|- 2943172 2945231 2944561.4 2942566 2945961 - gene protein_coding_gene FALSE TRUE AT1G09140.1|AT1G09140.2 ATSRP30.1 (ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1); RNA binding Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays] (GB:AAU29331.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays] (GB:AAU29331.1); similar to Os05g0364600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055323.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.505498105563185 4.17643853412728 0.00158224421760738 1 4.42047597408253 15.9028620805748 0.505498105563185 0.148288614193739
AT3G05650_at 6.38163512722755 6.62755725483957 6.68609842780997 6.98841478549701 5.48857498701411 4.51916787308048 3.9815458755421 4.10840295499777 5.19659459652175 4.55429566819421 5.32536942975055 6.09914445031629 4.35276489970427 5.37736495348474 5.61496460750085 4.98523217973924 4.51701458421589 6.00884700271196 4.60942406774726 0.241706440945639 0.24347526128399 0.242756455118310 0.237863000087715 0.226347828634984 0.237904173181414 0.231098528606623 0.236354051141546 0.234301904102735 0.22891850424206 0.232347145462529 0.227174578051823 0.230278905365674 0.235417677297110 0.232804798845804 0.230696515807077 0.237944030382487 0.233326756944250 0.237971332264657 3 3 - 1645931 1646458 1646174.545 1645686 1648579 - gene protein_coding_gene FALSE TRUE AT3G05650.1 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT3G05660.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to peru 1 [Lycopersicon peruvianum] (GB:AAV41395.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.572047517236106 4.17641126083737 0.00158231658709799 1 4.42043626498775 10.6336042645423 0.572047517236106 0.182136703592345
AT1G54120_at 3.62274148044452 3.91408527233902 3.25312900675276 3.48190177812714 3.31326326625821 3.61163789463703 4.07341350362624 4.12064540100210 4.56129269283119 4.44836567335249 4.18283157277171 4.80232225991394 4.07964185256767 4.11148391344641 4.15347147341116 4.36251276536434 3.94364595415857 4.56819727268885 4.6515067774724 0.197409318061889 0.195471499376338 0.199007062589108 0.205436618339502 0.195055801503748 0.199362335791964 0.194208726938305 0.194300094661750 0.201688689192406 0.195872974804284 0.195927523616000 0.196195256016438 0.197124817151228 0.196909379388576 0.198416958282520 0.196586284572137 0.207447965584419 0.194999807328448 0.193965598422302 1 1 + 20210772 20211094 20210909.364 20210688 20211208 + gene protein_coding_gene FALSE TRUE AT1G54120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14060.1) -0.397973379710438 -4.17616002203934 0.0015829834102197 1 4.42007046344553 8.08846974919455 -0.397973379710438 0.0827187638578027
AT2G25310_at 6.47308759062493 6.87196006320264 7.04071302495427 6.7584578490445 7.4613063459439 6.79508625245441 6.4313702937026 6.67456232420395 6.5485152332304 6.08357950778807 7.06423419928216 6.72735317244798 6.96442898088169 7.26613088952638 6.77488710863022 7.12856638417107 6.58759578765337 6.48204299935057 6.1546908529165 0.229596471004985 0.221993992910994 0.218237143664377 0.221372411526225 0.222858535658269 0.257442428826467 0.227119089548913 0.221178672316730 0.23773174507467 0.231274744229700 0.218237143664377 0.221846411579141 0.223030627673525 0.228109165347834 0.22336688331046 0.220012047589206 0.241035978959431 0.231920357713641 0.22649659620651 2 2|0 -|/ 10784520 10786170 10785273 10784180 10786305 - gene protein_coding_gene FALSE TRUE AT2G25310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32130.1); similar to Os06g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058183.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_794143.1); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969) 0.506644437881838 4.17416241631988 0.00158829579456041 1 4.41716162238457 13.3816513704604 0.506644437881838 0.149044057378767
AT1G03900_at 9.42244671284312 9.50649100469671 9.73773586418057 9.84505414777698 9.86816813898205 9.58591097522198 8.94175077009957 9.181333724497 8.38021505703234 8.49470395467188 8.93929021707789 8.53970857840731 8.67137823745569 9.00143740174591 8.68151720482016 8.75632562592445 8.7948603977246 8.11901095831982 8.39999045533158 0.145103838133861 0.143743951195543 0.144546103718152 0.146314257644374 0.147244107541220 0.152598311641897 0.145358346411114 0.148703988968377 0.150747213143837 0.143254573590215 0.142563636969925 0.142096759889229 0.144215170025591 0.145076811050781 0.151380632958536 0.143146339001039 0.149665322110501 0.148686481537517 0.139488171284054 1 1 + 991473 992779 992126.727 991138 993117 + gene protein_coding_gene FALSE TRUE AT1G03900.1 ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4) member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. Identical to Uncharacterized protein At1g03900 [Arabidopsis Thaliana] (GB:Q681Q7;GB:Q67YX5;GB:Q94B37;GB:Q9ZWB0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58600.1); similar to LOC553536 protein [Danio rerio] (GB:AAH78360.1); similar to Os10g0476000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064844.1); contains InterPro domain Adaptin ear-binding coat-associated protein 1 NECAP-1; (InterPro:IPR012466) 0.379591491922751 4.17167202151303 0.00159494478350291 1 4.41353434382155 18.0675668673021 0.379591491922751 0.0682743429662124
AT4G03960_at 3.65220651792085 4.5882776455551 3.36499560166009 3.81215703216332 3.00112132820354 3.05132078463894 3.24667910093140 3.42314342349254 2.60755311000625 2.82696642184419 1.43662036989647 2.51765163423028 2.05480353352865 1.98601722951278 1.93483248974326 2.27642299162294 1.67297801792059 1.74427673870958 2.59417977433512 0.251400083994637 0.275924194584088 0.247717454699103 0.242874240651783 0.244162416341057 0.247547352691079 0.24070798080138 0.247831774475057 0.2482423453662 0.250819581762254 0.246952292470369 0.247765628773026 0.24070798080138 0.252506757294613 0.247265043482806 0.244037338053815 0.256734898767072 0.250260069877897 0.24438208807635 4 4 + 1887681 1888936 1888312.636 1887526 1889209 + gene protein_coding_gene FALSE TRUE AT4G03960.1 tyrosine specific protein phosphatase family protein similar to tyrosine specific protein phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G05000.1); similar to tyrosine specific protein phosphatase family protein [Capsicum annuum] (GB:AAX20039.1); contains InterPro domain Putative tyrosine phosphatase; (InterPro:IPR004861); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) -0.57173035586239 -4.1714939722884 0.00159542126113238 1 4.41327497743984 5.83207941817443 -0.57173035586239 0.182311436904544
AT1G32520_at 7.84493326784884 7.92974310747308 7.86967779527753 8.2691027990873 8.48895321645154 7.76551972620223 9.17429724910012 9.5730832058531 8.13068329133821 9.31517195564547 8.17939211729169 8.43207726714884 8.75695892550985 8.35757537292077 7.51765349538806 9.01118026164996 8.58219731350679 8.52959457444816 9.37669225321182 0.218120072632353 0.212429434732574 0.235195454189542 0.211240653504117 0.211240653504117 0.222244802766351 0.218516469438267 0.228585681809439 0.249384026575624 0.213420834290851 0.214551924589716 0.211240653504117 0.215272874805927 0.225741734804093 0.224344606604314 0.212484761636400 0.231042113505011 0.229252054244742 0.211240653504117 1 1 - 11758406 11759084 11758655.6 11758195 11759260 - gene protein_coding_gene FALSE TRUE AT1G32520.1 similar to Os11g0220300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067521.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61574.1) -0.526110662031476 -4.17047313296256 0.00159815600145324 1 4.41178781526802 17.0452527122691 -0.526110662031476 0.159465839404956
AT4G17170_at 9.83905168350327 10.0630022444424 10.3158790362852 10.3252616105248 10.6106406952911 10.4887509165845 10.1831835221895 10.0445584877849 9.8633359789974 10.0302423758334 10.6956206617404 10.2216319428407 10.2443760917628 10.2860421004637 10.3176863230318 10.2872366259256 10.0167908783208 10.3932238881260 10.0718361242360 0.0975326783659887 0.0899935105930464 0.0927405338710586 0.0953405097174758 0.0969614965157325 0.0911765677711841 0.0955840641007214 0.0936995414539887 0.102175827784653 0.09528715152476 0.091151203649776 0.0916932175192716 0.0945193898787404 0.0984689540835478 0.0911957253421531 0.0924119051785356 0.0969798682871387 0.094847987845131 0.0919503879282333 4 4|0 -|/ 9644935 9645964 9645542.6 9644724 9646377 - gene protein_coding_gene FALSE TRUE AT4G17170.1 AT-RAB2 (Arabidopsis Rab GTPase homolog B1c); GTP binding member of RAB gene family similar to ATGB2 (GTP-BINDING 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G35860.1); similar to small GTPase Rab2 [Nicotiana tabacum] (GB:AAL28022.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.361019325597802 4.17026619400572 0.00159871096968643 1 4.41148632646551 20.3819398031001 0.361019325597802 0.0502502307403792
AT4G18120_at 6.91505199221174 6.77225434147499 7.4383553056452 6.98532178932679 7.83766054489816 7.08957907784586 6.48802722271118 5.89922003570089 5.48846550222258 6.5647704837806 6.55431491108171 6.46493444977158 6.59323550987528 6.47879006209734 5.75421250449311 6.98046125484912 6.60755136465176 6.54765634747587 6.44548041381024 0.170603015417315 0.176507683434401 0.174064845755698 0.175799196561481 0.174730182999600 0.187678534496390 0.171034676051633 0.174258865363457 0.188174397218178 0.180360487690962 0.183283162096912 0.170309137277116 0.172932509423224 0.181699664720009 0.194293917586051 0.169084965213606 0.187085719359212 0.180051012500205 0.179636121940284 4 4|0 +|/ 10041273 10041973 10041703.1 10038138 10042260 + gene protein_coding_gene FALSE TRUE AT4G18120.1 AML3 (ARABIDOPSIS MEI2-LIKE); RNA binding A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization. similar to AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G29400.2); similar to AML1 [Medicago truncatula] (GB:AAT38998.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.575248266001735 4.17023155015579 0.00159880389712152 1 4.4114358532949 13.2601254639642 0.575248266001735 0.184118314889371
AT2G44730_at 5.74020609681605 5.92892818614598 5.50648185585456 5.44936323898349 6.18161287241756 6.32352901466886 5.19498719916328 5.16966852039708 5.88226903250054 5.2693225607108 5.9179453157715 6.09162684453163 5.87821921681629 5.99099565201664 5.8852857532016 5.9873327787531 5.56071339034749 5.60489740539526 5.38886056302369 0.170691740118145 0.164018968636846 0.171341962860437 0.169070509926722 0.169757886665062 0.170725646885255 0.169194771902934 0.167770233465895 0.174214816518491 0.173463969894139 0.163607140356249 0.160974224960234 0.176483223244076 0.163267537454308 0.180878308999816 0.163117075672761 0.162709694415397 0.161098306392067 0.172878500773958 2 2 - 18444702 18445078 18444915.818 18444408 18445640 - gene protein_coding_gene FALSE TRUE AT2G44730.1 transcription factor similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G24860.1); similar to Os08g0484700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062084.1); similar to Os10g0564200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065409.1); similar to Myb, DNA-binding [Medicago truncatula] (GB:ABE94443.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain MADF; (InterPro:IPR006578); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.353971118688182 4.16497229760425 0.00161297677914944 1 4.4037714377974 11.3759026713971 0.353971118688182 0.0422692137242042
AT1G76540_at 1.82355206547282 1.95652588845986 2.15491082485493 1.68307700430743 1.80679220806461 2.14408953326188 1.52509432188248 1.65916073286868 1.73481968998555 2.11634743950635 2.82041347550846 2.66213880292004 1.9847687769704 2.34065611553202 3.22140704939944 2.40017823825508 2.63383260970783 1.92510822063750 1.68266265088168 0.215837592580573 0.208612719977593 0.214668465064854 0.216170199041576 0.209128042576608 0.216152386876475 0.21218006578341 0.208780235188375 0.211709057160698 0.210229255940688 0.213599122550386 0.219035894988968 0.208612719977593 0.21336908117447 0.229155143012704 0.208612719977593 0.219851647467059 0.214749153458513 0.216579970700683 1 0|1 /|- 28725448 28726435 28725906.75 28725222 28727415 - gene protein_coding_gene FALSE TRUE AT1G76540.1 CDKB2;1 (CYCLIN-DEPENDENT KINASE B2;1); kinase Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. similar to CDKB2,2 (CYCLIN-DEPENDENT KINASE B2,2), kinase [Arabidopsis thaliana] (TAIR:AT1G20930.1); similar to cyclin-dependent kinase [Populus tremula x Populus tremuloides] (GB:AAP73784.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.430043562388203 4.1647770381587 0.00161350549314516 1 4.40348680091196 4.01573674135036 0.430043562388203 0.105556604081578
AT3G44740_at 2.52584590806489 2.91670044932582 2.48535860676286 2.46961242515702 2.62633579384449 2.70908333758362 3.34426712256087 3.18952026895415 2.85561608170378 2.94502648494502 2.71047987660741 3.03862294363767 2.42116231793835 2.60162356790573 2.62788350762824 2.50095962043886 2.22322733032685 2.24340605850015 2.88834443589859 0.204489786295640 0.205630799185445 0.213872191819232 0.203077007231896 0.207181996649682 0.216405957847872 0.208845153562412 0.206912201767565 0.209422277293767 0.208420949815569 0.203077007231896 0.203077007231896 0.207076920770601 0.215316288305873 0.203077007231896 0.203077007231896 0.209707087844649 0.207734737821498 0.209557538433211 3 3|0 -|/ 16307525 16308189 16307811.7 16307228 16308674 - gene protein_coding_gene FALSE TRUE AT3G44740.1 tRNA synthetase class II (G, H, P and S) family protein similar to glycyl-tRNA synthetase / glycine--tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G29880.1); similar to Os08g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062369.1); similar to H0209H04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66534.1); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Glycyl-tRNA synthetase, alpha2 dimer; (InterPro:IPR002315) -0.385947122182828 -4.16427647136462 0.00161486173044387 1 4.40275707968136 5.50446531589273 -0.385947122182828 0.0741936344800892
AT1G72820_at 7.83346553664928 8.27136601641527 7.30870972801872 7.83734001161545 8.42641502039864 8.49013597766656 8.23337925580745 8.50120076042675 9.07131138916759 8.652360853757 8.1374976901722 8.13888284409678 7.82620801293856 8.09472316963938 8.06002708154445 8.43835271577743 8.36053996893903 8.40066006322466 9.0402543058311 0.169038780136576 0.160081950151739 0.176870583985615 0.16330982591369 0.162600222064043 0.169419110489615 0.163667454903294 0.160081950151739 0.167736858848522 0.161360630847052 0.169237279229434 0.171378617882418 0.161998749590851 0.170993432292292 0.169424630378646 0.164548653643967 0.174269810652917 0.164297489905256 0.167619122770388 1 1 + 27407588 27408112 27407839 27406540 27408335 + gene protein_coding_gene FALSE TRUE AT1G72820.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G26200.1); similar to Os09g0444700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063299.1); similar to Os03g0175200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049133.1); similar to mitochondrial carrier, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94258.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.466700057096757 -4.15966987525145 0.00162739889382907 1 4.3960398362276 16.6644616848132 -0.466700057096757 0.127989751226814
AT1G65820_at 11.2816892793119 11.6020052769413 11.7417631565919 11.8370312337162 11.6694686667658 11.2792692446333 10.6429984904807 10.7780009908111 10.4392214128833 10.4836008448243 10.7609427861703 10.6911697266576 10.8531126289757 10.8206120419608 10.4450540507226 10.7443393194353 10.1386083706974 10.6915530530402 10.2196992477371 0.0861773298318971 0.0816553304815998 0.0857604712260618 0.087737720367051 0.0835963076528093 0.0902170512827396 0.0842150911860178 0.0817853425225085 0.0867576850948965 0.0842845421010187 0.0844039316900108 0.0820715366112265 0.0825127020691125 0.0839357592724538 0.0829652204502112 0.0813098355741377 0.0956107903899829 0.083219492284697 0.085154089525271 1 1|0 +|/ 24488946 24490308 24489512.2 24488764 24490555 + gene protein_coding_gene FALSE TRUE AT1G65820.1 microsomal glutathione s-transferase, putative similar to Os03g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051042.1); similar to MAPEG family, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95670.1); contains InterPro domain Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); (InterPro:IPR001129) 0.409021530716584 4.15890008649358 0.00162950381877645 1 4.39491703077484 21.8660355419177 0.409021530716584 0.0919243844502544
AT4G37640_at 8.15588690934292 8.39721056162294 8.29388520221598 8.3684497092645 7.84151023597186 7.25235152294355 6.78027091867349 6.79277253429616 6.81666221877048 6.08064039738845 6.76725523246253 7.69577830114453 6.80449354788274 6.78435542302667 6.67603464369444 6.77979337788424 6.81716169254324 6.85868430358107 6.39112468145548 0.241641688444535 0.233117556066688 0.237063037923455 0.239514918251406 0.247923078309254 0.244652259634551 0.235310424212625 0.242166087969195 0.244759315991956 0.237755419225304 0.245136793929103 0.235047609338909 0.236244304260897 0.251553975138060 0.243927395834433 0.232770300028162 0.256603370329064 0.243631967041541 0.241018164807748 4 4|0 -|/ 17683224 17683957 17683554.556 17682971 17686935 - gene protein_coding_gene FALSE TRUE AT4G37640.1 ACA2 (CALCIUM ATPASE 2); calmodulin binding Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. Identical to Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) (ACA2) [Arabidopsis Thaliana] (GB:O81108); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to ACA1 (autoinhibited Ca2+ -ATPase 1), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G27770.1); similar to Cation transporting ATPase, C-terminal [Medicago truncatula] (GB:ABE85875.1); similar to plasma membrane Ca2+-ATPase [Glycine max] (GB:AAG28435.1); similar to type IIB calcium ATPase MCA5 [Medicago truncatula] (GB:AAM44081.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.437991368010529 4.15881919398594 0.00162972517780736 1 4.39479903660918 14.3990023648659 0.437991368010529 0.110952368481348
AT3G62970_at 7.79238392145434 7.48393289990999 8.11413466906372 8.01649750013182 8.50846568752166 7.8854723647168 7.70197667692115 7.66035103481485 6.91128998267452 7.15344357298422 7.67169331026771 7.130465241027 7.29821077527322 7.68516533148195 7.67238028617171 7.56805709230165 7.75399832690173 7.32237813798529 7.15573604868846 0.169303180599902 0.175647512657688 0.183121200536028 0.177021964576536 0.173351664658317 0.175432230593172 0.171676776720534 0.171425343381155 0.186768905210903 0.179154838309578 0.165764927415611 0.168627358992003 0.171784431571305 0.172455129870281 0.180541143582089 0.17621347505828 0.171267816763847 0.179262954619291 0.178748237698384 3 3|0 +|/ 23282234 23283633 23282983.875 23281608 23283898 + gene protein_coding_gene FALSE TRUE AT3G62970.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G18650.1); similar to Os03g0348900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050105.1); similar to Os12g0538500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066941.1); similar to PGPD14 [Petunia x hybrida] (GB:AAD02556.1); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.455392558321985 4.15534268413336 0.00163926824101113 1 4.3897270710264 15.1885435597128 0.455392558321985 0.121696737938741
AT2G37330_at 5.15786024249508 5.75703230599591 4.81197363049423 4.7425053061883 5.28433087594338 5.67352466281328 6.10558848630265 5.72715929796252 4.84086674590945 5.25127362515339 4.9405990853582 4.54361864303551 4.79157359903107 4.61665979542591 4.48988292155900 4.57116213143582 5.15802595175618 5.05114858729531 5.47278716463626 0.265077508975936 0.258318679119659 0.260012018091476 0.261053550467223 0.258318679119659 0.260272900241065 0.264846792627713 0.268179248711116 0.27573944642534 0.262637674098370 0.258318679119659 0.258957288715202 0.264092095003981 0.258763063438063 0.261964535399354 0.259278932919481 0.259795804267695 0.258785010064964 0.261035121798831 2 2 + 15676494 15677220 15676878.182 15676217 15677266 + gene protein_coding_gene FALSE TRUE AT2G37330.1 ALS3 (ALUMINUM SENSITIVE 3) Encodes an ABC transporter-like protein, without an ATPase domain, required for aluminum (Al) resistance/tolerance and may function to redistribute accumulated Al away from sensitive tissues in order to protect the growing root from the toxic effects of Al. similar to Os05g0119000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054479.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90494.1); contains InterPro domain Conserved hypothetical protein 245; (InterPro:IPR005226) -0.488400901766739 -4.15517397684008 0.00163973282664356 1 4.38948089303516 10.3868183599887 -0.488400901766739 0.140431856593774
AT4G00730_at 7.62958146844241 8.0208402044319 7.38806228011297 7.92424595613773 8.24442530634941 7.85049886578218 7.61744347924243 7.60498615158484 6.87088028544422 6.9185938029564 7.75224906879702 8.23886784155606 7.89497947808587 8.08352396166685 7.43858380369116 8.09567928537385 7.64487289889894 7.52559428692482 7.25900679492067 0.186176529996191 0.185933850630730 0.193252091298421 0.188793860911793 0.195346386809711 0.198951364561060 0.191474622706302 0.200719856794932 0.198276015433755 0.193254890684397 0.19168382092632 0.185933850630730 0.185933850630730 0.188119348825501 0.199192985782914 0.189540423439190 0.201900401966248 0.195410971774293 0.19430506902097 4 4|0 -|/ 299758 300825 300317.6 299359 304508 - gene protein_coding_gene FALSE TRUE AT4G00730.1 ANL2 (ANTHOCYANINLESS 2); transcription factor Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development similar to HDG1 (HOMEODOMAIN GLABROUS1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61150.1); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeodomain protein HB2 [Picea abies] (GB:AAL83725.1); similar to START domain, putative [Medicago truncatula] (GB:ABE88255.1); similar to baby boom interacting protein 2 [Brassica napus] (GB:ABA70760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.475864404927033 4.15344192707811 0.00164451049948253 1 4.38695323259938 15.2102375252929 0.475864404927033 0.133589856648038
AT4G32400_at 5.36936089686519 5.36466379395761 4.61931039679797 4.61962090955903 4.78249692791761 4.27462402198379 5.50697679067178 5.59799386183327 5.24309789812289 4.86272156502722 4.95556339999838 5.74661833850441 4.99342250839885 4.60160361862453 5.02055701193469 4.87665042975725 4.86902312535156 5.02396892368615 4.6973688844625 0.215532991983124 0.220742013671882 0.229320210977054 0.220903446147595 0.218872980284645 0.222665561867731 0.22120118152996 0.224907869907702 0.24014959317383 0.215251474050268 0.217171673239251 0.219972434183917 0.217273679269980 0.219495976340575 0.222353718117456 0.221654904898275 0.23521486676883 0.224229014791712 0.219439861982400 4 4 + 15639478 15640160 15639857 15638631 15640471 + gene protein_coding_gene FALSE TRUE AT4G32400.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT3G20240.1); similar to brittle 1 protein-like [Solanum tuberosum] (GB:ABA81858.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.404602984053128 -4.15175601190241 0.00164917487675921 1 4.38449246068599 9.9895419676497 -0.404602984053128 0.0892937171570723
AT2G27600_at 10.0197288151823 9.99732015330226 10.1356995941909 10.1173771998022 10.2034251808975 10.1661143509758 9.75442300686204 9.49688343728124 9.86534930659447 9.42178480224784 10.0687295107282 10.0640554281079 9.9529310896026 9.91781934198603 10.0407635692723 10.0678178739984 9.67701766829489 10.0198708743957 9.52584403561022 0.0963963409667021 0.09323449669484 0.104136471927222 0.093966769584505 0.0930221136461944 0.0991962774924148 0.093434881140627 0.106602496604077 0.100427971507775 0.0957740423020659 0.0926323625812369 0.091694984770616 0.095187341102057 0.100404745783823 0.0966770176366595 0.0921976724933263 0.101216061956999 0.0973070256128505 0.0933026287944473 2 2|0 +|/ 11789907 11790751 11790305.857 11788115 11791069 + gene protein_coding_gene FALSE TRUE AT2G27600.1 AAA-type ATPase family protein / vacuolar sorting protein-related similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum] (GB:AAF21428.2); similar to AAA ATPase, central re (GB:ABE93205.1); similar to suppressor of K+ transport growth defect-like protein [Gossypium hirsutum] (GB:ABD97880.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain MIT; (InterPro:IPR007330); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.355182424853523 4.15117386311491 0.00165078869933689 1 4.38364265255464 19.7765973261613 0.355182424853523 0.0453114437007922
AT1G18800_at 3.98897176241447 4.57735198495864 4.27743764949753 3.8375933346148 4.16381107861948 3.60483835358606 5.60086498140996 5.2303991627496 3.46874432992857 3.98943798635432 3.05587650983742 3.83119978479917 3.57873123223898 3.36582444295263 3.68896085823113 3.56381955868349 3.72926278707301 3.16211909848395 3.68823775963272 0.236679202509861 0.2263398350655 0.235806610718081 0.230881095410003 0.230088574836395 0.240365769691409 0.252690560219477 0.248157619956731 0.250936239996979 0.243578744411773 0.228253937970371 0.230006659852756 0.238492833437464 0.234751761735260 0.230968455832921 0.227215339399596 0.2263398350655 0.229886068831714 0.233178879394199 1 1|0 -|/ 6481900 6482911 6482463.429 6481104 6483587 - gene protein_coding_gene FALSE TRUE AT1G18800.1 NRP2 (NAP1-RELATED PROTEIN 2); DNA binding / chromatin binding / histone binding Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. similar to NRP1 (NAP1-RELATED PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G74560.2); similar to Os02g0576700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047218.1); similar to nucleosome/chromatin assembly factor A [Zea mays] (GB:AAK67146.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.548487971702383 -4.15116754039871 0.00165080623610812 1 4.38363342250866 8.01638235981932 -0.548487971702383 0.172130658222493
AT2G25625_at 6.18789490575889 6.15371703801316 7.44564602231729 7.46708609093006 7.34567558536804 7.11900001260565 8.1575118769803 7.68345918793103 5.84458458277835 6.38295981483002 3.58527109055692 4.2345332505353 5.88749550887286 4.90611159188697 2.83141037650704 6.66134341660869 7.12826314018317 3.9822877459114 5.81722705391991 0.262990575736699 0.256400798310507 0.25925704700659 0.256400798310507 0.258012416605957 0.264671833812456 0.262333167808982 0.263461456933629 0.268410662133636 0.256400798310507 0.278050409564011 0.263855563443451 0.260570353585691 0.266640290754539 0.28052309128315 0.256400798310507 0.260806969726706 0.273223601636659 0.256400798310507 2 2 + 10913652 10914116 10913891.818 10913532 10914366 + gene protein_coding_gene FALSE TRUE AT2G25625.1|AT2G25625.2 similar to Os05g0575000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056395.1) -0.407064063204442 -4.14945703192947 0.00165555767764407 1 4.38113616018021 12.6535055061425 -0.407064063204442 0.0912008866170595
AT4G27940_at 3.24631739495257 3.58066874977935 3.73761063167356 3.04567424266134 3.19461532632578 3.23838232338986 4.64963900930753 4.78089477920419 3.46076961103523 3.92440414512693 3.74778112021535 3.50101273318342 3.76818683993809 3.00775744041505 3.65743498712563 4.26433361385262 3.70450736038766 3.93439501613806 4.29716303279873 0.269034890086181 0.259275540406084 0.263393143665268 0.260933013612243 0.271853043256289 0.26427464293768 0.257869375481995 0.261516763706909 0.257485949316299 0.266052454434246 0.272107293196138 0.265064140522199 0.276118800287993 0.265967193471237 0.260479852482818 0.26138336949706 0.273926716759458 0.258045722663475 0.260412850812960 4 4|0 +|/ 13905823 13907006 13906530.7 13904480 13907251 + gene protein_coding_gene FALSE TRUE AT4G27940.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G46320.1); similar to putative mitochondrial carrier protein [Hordeum vulgare subsp. vulgare] (GB:CAI84705.1); similar to Os08g0386800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061710.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.478122738189125 -4.14920933199516 0.00165624691994822 1 4.38077449306376 7.48036950810875 -0.478122738189125 0.135127927946663
AT3G53000_at 6.13493280960944 5.97607428163039 5.83838884019747 5.83941776299684 6.74758969565966 6.01833810931359 5.68686202357921 5.12717519820564 4.70209869677377 5.07108772460338 5.72123575958918 5.2715299480006 5.74104494580795 5.91989279075452 5.1209862191611 5.39588374124599 5.87596518160599 5.30915073671856 4.83588330714788 0.226690728758161 0.223915915085606 0.223720882346131 0.226397957845871 0.229046358251522 0.227029313201618 0.229458038093076 0.223091951584030 0.221216422440725 0.223560955737617 0.230065982971634 0.223995564765708 0.218744613448782 0.218298738926097 0.218298738926097 0.220764071630864 0.222039044191107 0.228301322724569 0.231008847422864 3 3 + 19665736 19666708 19666408.636 19665046 19667058 + gene protein_coding_gene FALSE TRUE AT3G53000.1 ATPP2-A15 (Phloem protein 2-A15) similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Os03g0116700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048762.1); similar to Os02g0675800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047722.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92303.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.527221889818931 4.14900397985506 0.00165681855371601 1 4.38047465098028 11.1281728775834 0.527221889818931 0.161441944518008
AT1G73790_at 6.11798657016323 6.60456368795037 5.89968873427445 6.20967299521385 6.85894356534847 6.55950658449297 5.71908641130734 6.26389597492662 5.29884654111163 5.24292985137888 6.30964408843361 6.1772183554765 5.8474650671073 6.46027130803909 6.32797088087402 6.38726622357059 6.09818137365278 5.86314790086615 5.63237513058372 0.192822546767602 0.192822546767602 0.207089580833118 0.198449206438550 0.197993631206205 0.203917402884261 0.193875593759054 0.194175401589644 0.217699441030481 0.201770513097291 0.196456278563180 0.197176257053370 0.196199588189171 0.206413876875350 0.203128194476915 0.192822546767602 0.203528053027860 0.198069585841783 0.201619409489279 1 1 + 27748682 27748838 27748750.818 27748333 27749038 + gene protein_coding_gene FALSE TRUE AT1G73790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09550.1); similar to Os03g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050438.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89222.1); similar to Os03g0824000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051747.1) 0.499040808736654 4.14641640971439 0.00166403918691899 1 4.37669589831473 12.0668078108483 0.499040808736654 0.146773158367016
AT2G17710_at 9.41329114038472 9.42779406347864 10.1262816794257 10.2421858645737 10.5519637483700 9.91735786351105 7.30819579367366 7.79439438978443 7.40345640629561 7.03058738489298 5.29875533084937 4.39446825057238 7.0641033219425 6.91396534570963 4.02609445286246 7.80454353096561 7.8685980697979 5.61143133440032 6.1873250852731 0.270157882727131 0.266301724522424 0.272943118340980 0.275918882091788 0.281464501197634 0.266017099776310 0.257988569841983 0.262841331356129 0.260917748518546 0.267151243071679 0.266097487193596 0.278778388112588 0.262494860185398 0.256363841711878 0.2904356585928 0.266601574341929 0.269677485415232 0.265810856535035 0.263268815985165 2 2|0 +|/ 7700971 7701606 7701383.7 7700678 7701828 + gene protein_coding_gene FALSE TRUE AT2G17710.1 similar to Os04g0560700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053549.1) 0.486241885645016 4.14632497733462 0.00166429492982306 1 4.37656235666387 15.8459503579626 0.486241885645016 0.139816797142039
AT3G18035_at 8.82443112101225 8.76925095515588 8.80428994633835 8.85706847894535 9.25472994733095 9.09906207265928 8.14693405151716 8.29343020330125 8.66447069328172 8.63356549983485 8.78772236892236 8.85471834806182 8.84068242768382 8.92043159246467 8.73239851509209 9.10687636333354 8.54870450780728 8.86002103116985 8.58126213211106 0.127793918115943 0.125778304421955 0.127573098994302 0.129128961087420 0.126399847340476 0.136544677204627 0.131350288880016 0.125962429363307 0.136948670011766 0.132313624164819 0.131801654124432 0.128747259476670 0.131651304619211 0.126340382377376 0.123309956334533 0.127557106021711 0.129691622474405 0.135176428602336 0.137071557730974 3 3 - 6169416 6170598 6170160.273 6169096 6171730 - gene protein_coding_gene FALSE TRUE AT3G18035.1 HON4; DNA binding A linker histone like protein similar to histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to HMG I/Y like protein [Glycine max] (GB:CAC69997.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.350143823906454 4.1457234552003 0.00166597845360436 1 4.37568377134847 17.4850881817290 0.350143823906454 0.0392815156731573
AT2G02590_at 3.65817823729620 4.03597261543456 3.67762163773083 3.5321708947848 3.69051600188789 3.43925853604625 4.37544471409983 4.09945549794147 4.87003817522351 4.18061446699943 3.90980734430582 4.2341086094379 3.84582596104399 4.40336785478766 4.35818839858702 4.42867316268698 3.24497653483637 4.18705807164624 4.28075670398626 0.245515190050208 0.251889709879650 0.238295281039869 0.239232931797658 0.246321692525225 0.251043631899002 0.245676459544711 0.239989530146074 0.251402268281037 0.237945190368684 0.242002291669048 0.237873459292834 0.239840567436724 0.23724214083398 0.238792661996486 0.238783027207268 0.281616843864186 0.238711336890777 0.242903081913672 2 2|0 +|/ 705364 706411 706006 704922 706668 + gene protein_coding_gene FALSE TRUE AT2G02590.1 similar to Putative small multi-drug export [Medicago truncatula] (GB:ABE82708.1); similar to Os03g0800500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051585.1); contains InterPro domain Putative small multi-drug export; (InterPro:IPR009577) -0.412336685908568 -4.14332472290695 0.00167270966225504 1 4.37217962962567 8.07372919568751 -0.412336685908568 0.0952877499568166
AT2G21280_at 8.5302919250059 8.36418083027811 7.90884773365571 7.84996303146518 8.1599137966327 8.03147169180506 9.09546923391008 8.832229602376 9.0622376623179 9.20973973569772 8.89642993391715 9.14525912602983 8.6408421856351 8.8985768872723 9.34637984221921 9.19939147297654 8.96617310607715 8.90962746307716 8.7779461483565 0.133746860226304 0.130466722322335 0.133327378717161 0.127978039130047 0.131356232048088 0.145638241540334 0.127186541679287 0.128344910033851 0.135418662779793 0.130600113404291 0.129428132296218 0.125883576593503 0.135636290954705 0.125479010309431 0.132625497113865 0.12857409876545 0.132676327847753 0.134293422617011 0.127398391437963 2 2|0 -|/ 9117672 9118667 9118112.778 9117394 9119788 - gene protein_coding_gene FALSE TRUE AT2G21280.1 GC1 (GIANT CHLOROPLAST 1); catalytic/ coenzyme binding A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. similar to terpene cyclase/mutase-related [Arabidopsis thaliana] (TAIR:AT4G33360.1); similar to Conserved hypothetical protein, YfcH [Medicago truncatula] (GB:ABE79938.1); similar to Os02g0834700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048641.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Domain of unknown function DUF1731; (InterPro:IPR013549); contains InterPro domain Conserved hypothetical protein, YfcH; (InterPro:IPR010099) -0.367150007238171 -4.14322401932345 0.00167299287213916 1 4.37203249968779 17.3550340727784 -0.367150007238171 0.0591565497050546
AT1G69935_at 7.2929330317581 7.4438690713648 8.02543964134382 7.85238698582685 8.11177696488406 8.06994472023707 7.70885133381987 7.99013376845798 7.31158365925669 6.69071036413516 7.37867427098948 6.76928529687623 7.24387090465565 7.61967672176496 6.87410379387808 7.91128258949 7.58279522233734 7.53021672851828 7.07924540179231 0.206501436532221 0.202504406059042 0.199149892770874 0.201188920320948 0.204637329191190 0.213416910158083 0.201672567221676 0.208110930540347 0.220260232422448 0.220244934853492 0.205428955493389 0.205527827442710 0.217251294413855 0.197479546735206 0.217896442445045 0.197493159493923 0.208033404560908 0.208007506911955 0.209957565717794 1 1|0 -|/ 26345765 26346667 26346216 26345464 26346789 - gene protein_coding_gene FALSE TRUE AT1G69935.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33780.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94797.1) 0.371249329695897 4.14115438235043 0.00167882443652149 1 4.36900837909483 15.0073759394408 0.371249329695897 0.063253469213993
AT1G09350_at 7.44109907661752 7.36148412502865 4.47882979550076 4.22614919980549 5.24839378074209 4.62280259571841 5.36223170095473 5.33863980628396 3.91085884580035 3.82987538921819 3.92650019729583 4.64563700982678 4.69448725391421 5.1799343627945 4.75013850147811 6.60402034641954 4.04020412043089 3.64474563050705 3.80257953222416 0.255854795140592 0.262933094171523 0.262164064182387 0.256429527012023 0.246526844567606 0.260225744040595 0.245490863124531 0.248930139590114 0.270395072426665 0.260881802367910 0.256891108993637 0.246539776760811 0.248136400525998 0.247568287194987 0.248067308566063 0.250637336128877 0.251583552516363 0.26004493972856 0.251795250406882 1 1|0 +|/ 3020402 3020874 3020621.889 3019821 3021443 + gene protein_coding_gene FALSE TRUE AT1G09350.1 ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G56600.1); similar to galactinol synthase-like protein [Thellun (GB:AAM19710.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.446941331096866 -4.14021189183045 0.00168148709690772 1 4.36763101226794 9.77669360187192 -0.446941331096866 0.117639873756902
AT3G56980_at 1.03686179611847 0.835143117884822 0.409446361068754 0.646996515675427 1.03739451660932 0.884295208186702 0.759299140165834 0.93150563596677 1.32864003081840 2.83028136766996 0.786887570805236 1.47640552181691 2.6704193021624 0.808852733831766 0.512398700119214 4.32187506107329 0.96830186575963 0.588025652261567 2.2044264872735 0.240917158961564 0.243401110390391 0.243899989627906 0.245504873912666 0.239886748208041 0.251529135093773 0.240281622581737 0.244660820941375 0.239668580337844 0.256253529553463 0.241214776291311 0.247730889983971 0.251354450599231 0.240855115729976 0.247311287636474 0.269986505755731 0.245578088326373 0.239182572837077 0.258059372976141 3 3 - 21097689 21098238 21097961.364 21097525 21098473 - gene protein_coding_gene FALSE TRUE AT3G56980.1 ORG3 (OBP3-responsive gene 3); DNA binding / transcription factor similar to ORG2 (OBP3-responsive gene 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G56970.1); similar to basic helix-loop-helix family protein [Thlaspi caerulescens] (GB:ABD37969.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.375319716545395 -4.13971036461251 0.00168290577441053 1 4.36689801970047 2.6364986679092 -0.375319716545395 0.0670717943656684
AT3G43950_at 1.39297797771549 1.56416261571308 1.46579950678294 1.84769289554112 1.40813417518990 1.65756261384960 1.06496246217869 0.649488523452538 0.821812969892852 0.716519294409845 1.01669533036844 0.968221089006417 1.12832789432083 1.33941254997327 1.09362664286589 1.09309879327771 1.87763661071132 1.17736885963867 0.763576257008997 0.20461084682297 0.197242502343752 0.214001990129335 0.205143289895301 0.204283755595783 0.197242502343752 0.198775709075519 0.202339117226683 0.213354021319855 0.204230621765320 0.215727054625548 0.202404606639592 0.205622623380341 0.203291484955767 0.197242502343752 0.199644829129417 0.202692934947563 0.20419116295576 0.207338999870971 3 3 + 15777402 15777952 15777655.273 15777348 15778001 + gene protein_coding_gene FALSE TRUE AT3G43950.1 phosphotransferase, alcohol group as acceptor similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G27570.1); similar to ubiquitin -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81385.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago truncatula] (GB:ABE94037.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) 0.435697516954513 4.13926060747133 0.00168417907182685 1 4.36624065785631 2.37089825215669 0.435697516954513 0.110806332374642
AT3G08710_at 8.41337663631549 8.84554528729442 8.82859004765654 8.84807285771168 9.36718092623257 8.8066319267723 8.51851707146906 8.37699348308046 7.9842365674001 7.42604180979072 8.15510696229382 8.34631791059878 8.29514743218263 8.30097546039894 7.68029027994773 8.27983934212239 7.93816050123779 7.94940432944435 7.46220458781115 0.18221988103048 0.185770267868461 0.181158480051566 0.186589527714702 0.1809560513212 0.178588243285746 0.178559886840786 0.182555719465829 0.197283569152663 0.184581540337619 0.179317910388804 0.179233512041449 0.183581188691779 0.188874663073412 0.188128236467134 0.183523846571759 0.205501330444158 0.179388132199495 0.186603397552631 3 0|3 /|+ 2645738 2646278 2645958.5 2645173 2646503 + gene protein_coding_gene FALSE TRUE AT3G08710.1|AT3G08710.2 ATH9 (thioredoxin H-type 9); thiol-disulfide exchange intermediate|ATH9 (thioredoxin H-type 9) similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G40790.1); similar to thioredoxin h-like protein [Nicotiana tabacum] (GB:AAN63619.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.459002554498864 4.13764742511616 0.00168875439516591 1 4.363882590582 16.6217716623727 0.459002554498864 0.124958581063857
AT3G48570_at 6.64298925776078 7.19791907660445 6.84554022598044 7.06205514084754 7.08646479725188 6.6625943277347 6.25903895957317 6.44823818273508 6.08642070555947 5.96416328386847 7.21012126720196 7.11888614175175 6.76469163799432 7.03048407762177 6.39212160311824 6.56135929674371 5.9642120976275 6.05834476288316 5.88129490454895 0.188687534869567 0.177450835490545 0.182463321638454 0.176954810036240 0.173221893127678 0.187467822648195 0.178980449457167 0.18054746344354 0.202340347704825 0.177162728102623 0.174499260337135 0.178199778963604 0.176339332250549 0.180710304180362 0.185192417027244 0.183613125483003 0.199440661604591 0.187890628417044 0.178405396826576 3 3|0 -|/ 18014964 18015868 18015321.1 18014898 18015959 - gene protein_coding_gene FALSE TRUE AT3G48570.1 protein transport protein SEC61 gamma subunit, putative Identical to Protein transport protein SEC61 gamma-3 subunit (SEC61G3) [Arabidopsis Thaliana] (GB:Q9SMP2); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT4G24920.1); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT5G50460.1); similar to Os02g0178400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046076.1); similar to Protein transport protein SEC61 subunit gamma (GB:Q7Z1B8); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_797211.1); contains InterPro domain Protein secE/sec61-gamma protein; (InterPro:IPR001901); contains InterPro domain Protein translocase SEC61 complex gamma subunit; (InterPro:IPR008158) 0.468675949872056 4.13537200543288 0.00169523003155355 1 4.36055583069834 13.0830152836994 0.468675949872056 0.130686447185292
AT4G27260_at 4.18210731614388 4.25636842027389 3.23467730200941 3.38652649115228 3.68402382068400 3.98853320764894 2.90212888765858 3.16468591843132 3.70236123879881 1.9770461895098 3.71156883671616 3.93359032631082 4.20417366199563 3.8140678225326 3.67658436129745 3.85647191927186 3.56817689136847 3.73146282033296 3.28920309419637 0.199515608518784 0.184318671731355 0.183229095501335 0.185265523373479 0.18497107341168 0.185842755265023 0.182933426913749 0.180736934587921 0.1896749162486 0.189385449642902 0.184081809322432 0.185114945773780 0.202387887309000 0.180549894899722 0.188509636842921 0.186410857913325 0.182107524128374 0.184951686319869 0.181843813306186 4 0|4 /|+ 13655368 13655855 13655573.5 13653615 13656210 + gene protein_coding_gene FALSE TRUE AT4G27260.1 GH3.5/WES1; indole-3-acetic acid amido synthetase encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin. Identical to Indole-3-acetic acid-amido synthetase GH3.5 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 5) (AtGH3-5) (GH3.5) [Arabidopsis Thaliana] (GB:O81829); similar to DFL1 (DWARF IN LIGHT 1), indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT5G54510.1); similar to GH3.1 [Arabidopsis thaliana] (TAIR:AT2G14960.1); similar to YDK1 (AUXIN UPREGULATED1, YADOKARI 1), indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT4G37390.1); similar to auxin and ethylene responsive GH3-like protein [Capsicum chinense] (GB:AAS02074.1); similar to Nt-gh3 deduced protein [Nicotiana tabacum] (GB:AAD32141.1); similar to auxin-induced GH3 protein [Pinus pinaster] (GB:CAJ14972.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.384796404444996 4.13486777438549 0.00169666853212047 1 4.35981851780939 7.0006558809069 0.384796404444996 0.0754794236475699
AT3G08970_at 2.24115934219758 2.69734435716762 3.27910000452289 3.49936593958793 1.92845609126661 1.96797063822288 1.30998892903759 1.45559612757262 1.11949910426088 1.13871560343617 0.777289897874976 1.14038913471966 0.839039672009308 1.25697387607275 1.10915339893677 1.01619263989678 1.29506955286452 1.32744428744830 0.820856700942024 0.231128559497611 0.237528905907463 0.240153617725305 0.244323137958478 0.228888221215025 0.224763885828196 0.225534952282392 0.225006034963324 0.231375218211066 0.230151313507225 0.228767583137077 0.223334937682199 0.229859322887011 0.231905117029646 0.223067846007783 0.22422923362899 0.233990363372698 0.234428016399950 0.23008796894624 3 3|0 +|/ 2739633 2740077 2739861.5 2737542 2740535 + gene protein_coding_gene FALSE TRUE AT3G08970.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G39960.1); similar to DnaJ domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95409.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.405768950335544 4.1323590477741 0.00170384454109076 1 4.35614955721401 3.35814827554242 0.405768950335544 0.0914712516850723
AT2G01190_at 5.59048237998759 5.9728026977581 6.160777546808 6.36726465541429 6.46353260733116 6.02978716232146 5.25145757602577 5.17310363934977 6.00394543777866 4.91184136653311 5.41695487505457 5.28146110399422 5.90815252523819 5.54632672807287 5.10801532265439 5.60428172872295 5.02836214114341 5.44483059250161 5.0377232633654 0.216551397334297 0.212947045246657 0.220142277143434 0.213923366618827 0.22058798114198 0.229649165149786 0.214414823865902 0.216600618865250 0.219119610863844 0.221186884604458 0.212592917460998 0.215761278747529 0.213968646407732 0.217287524786636 0.215857120223197 0.212943299602714 0.218427184468308 0.212592917460998 0.212592917460998 2 2 + 116716 117269 116979.818 114974 117639 + gene protein_coding_gene FALSE TRUE AT2G01190.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G18230.1); similar to unnamed protein product; contains similarity to unknown protein gb|AAD14519.1 gene_id:MIE15.2 [Medicago truncatula] (GB:ABE90805.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.42892017881774 4.13044809465669 0.00170933191937360 1 4.35335419154338 11.2437184413238 0.42892017881774 0.107109541880981
AT1G26930_at 3.72930692632438 3.62926117481098 4.15964269376262 4.29674879831945 4.02674630786991 4.01877828469163 3.00380316955865 3.0377315744458 3.10744389853624 3.38318533506895 3.22585245836979 2.87815460223196 3.21185379669276 3.19899882675218 3.10840228517062 2.98503671033654 2.87959168738175 3.30021718956501 3.0734041758673 0.236714007598325 0.243866595823827 0.243321257287023 0.236997494110777 0.230945999340109 0.240258090088211 0.234339903220412 0.235874496377395 0.244482198027536 0.232324748009846 0.229104789448674 0.236965148225183 0.237589340050583 0.243178428076174 0.247836725651322 0.230926729792908 0.231145209842065 0.247206476057751 0.232965607581403 1 1 - 9336208 9336772 9336462.182 9336044 9337773 - gene protein_coding_gene FALSE TRUE AT1G26930.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G02870.3); similar to 44123 (GB:AAD14499.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.342977808973848 4.1299824501501 0.00171067182903602 1 4.35267295771231 6.88101465674963 0.342977808973848 0.0299848667157494
AT3G15840_at 12.3265219727537 12.4243332312134 12.7412597169125 12.6579132730311 12.8974359815824 12.5080902569096 12.4249286158021 12.2798932538051 12.1795734787036 12.2566099393843 12.7257347850749 12.3972772430187 12.6948037358227 12.6367074139877 12.2153165327890 12.5708555723134 12.7144624185845 12.6433637795184 11.9958225672965 0.087666750584026 0.0833098166738944 0.0858054512680113 0.085080445833462 0.0828545366271402 0.0904277915884479 0.0821391816095086 0.0838518959963882 0.090878545686806 0.0830147415925854 0.0846643612420588 0.0829168744502497 0.0823477117217227 0.0917082287929705 0.0842900795196675 0.0821391816095086 0.0892035925631621 0.0829277285851084 0.085014963619574 3 3|0 -|/ 5356795 5357861 5357227.3 5356644 5358507 - gene protein_coding_gene FALSE TRUE AT3G15840.1|AT3G15840.2|AT3G15840.3 similar to Os03g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050569.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97352.1) 0.384034364362908 4.12955699480519 0.00171189705127606 1 4.35205049173461 24.8919556278847 0.384034364362908 0.0752616745461203
AT2G31900_at 1.61753084126374 1.58970325521729 1.62720737102844 1.92604566870055 2.0078128650512 1.76904051424498 1.95123681680606 1.40816704406063 2.13828419193806 2.35452381154625 2.68293444919165 2.81300222079170 2.88918219070444 2.65014114429238 2.63650761153582 3.18587953663111 2.73814438344367 3.21798484733099 1.98576535478247 0.203720620032118 0.205987758463461 0.215896314564206 0.214510218500038 0.211738533436846 0.207680484440664 0.214324868590729 0.205661567542931 0.208535549220801 0.212511193622984 0.212965249167889 0.206329230290177 0.202005270498117 0.202747915944891 0.208651970914101 0.203000908552446 0.215275247135523 0.205694846758132 0.217723948651117 2 0|2 /|- 13567842 13569056 13568241.857 13567837 13576700 - gene protein_coding_gene FALSE TRUE AT2G31900.1 XIF (Myosin-like protein XIF) Encodes an novel myosin isoform. similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to myosin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98866.1); similar to putative myosin [Oryza sativa] (GB:AAL58953.1); similar to myosin heavy chain class XI E1 protein [Oryza sativa (japonica cultivar-group)] (GB:AAQ87014.1) 0.441532355326994 4.12948335397179 0.00171210921441140 1 4.35194274813517 4.24271629741952 0.441532355326994 0.115054116990709
AT3G22750_at 2.95234348609893 3.27272362908850 3.21900377295311 3.74094513218124 3.18611241087268 3.29478130996312 3.59013113227933 3.83787333311533 4.09156028928548 4.45141901636032 3.22250645776925 2.79805166779787 3.30309782242248 2.88889069909394 3.11516283209468 3.52388171104909 4.27530017609073 3.53352567771789 3.95244047732956 0.194709502941072 0.184737728483221 0.185357594935082 0.190490433648696 0.188930483215456 0.190148187172805 0.184955886334192 0.186906080465043 0.191640447301364 0.195277007275007 0.199042653889119 0.188921008821981 0.185139101493885 0.184153425467530 0.204674259164530 0.184153425467530 0.195320049164018 0.187832765392828 0.191684575971182 3 3|0 -|/ 8037394 8038376 8037790.778 8037223 8039910 - gene protein_coding_gene FALSE TRUE AT3G22750.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G14780.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06452.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.442822517903476 -4.12917085913604 0.00171300983392325 1 4.3514855291499 7.1355853049005 -0.442822517903476 0.115862823898369
AT2G05920_at 8.5487747953172 8.94573780232023 8.16271479684614 8.53630509974174 8.37386539258775 8.30773575871915 9.60697272569933 9.88573129050733 9.62079660746588 9.42242790319867 9.95547252814356 9.80480858417574 9.58612954465987 9.67618626019706 9.7442154525384 9.45654484587476 9.01943035607417 9.850640004106 9.7295120328627 0.117297849521105 0.109879893631179 0.133308165751432 0.119272113339985 0.116744508862120 0.139468888692273 0.112446929970104 0.112289045898487 0.120162537804038 0.114645075469444 0.109879893631179 0.110486620494226 0.112180944740235 0.120402975873424 0.109879893631179 0.111159271542073 0.123655809846751 0.111383352651644 0.115261273992484 2 2 - 2269841 2270373 2270091.727 2269512 2272226 - gene protein_coding_gene FALSE TRUE AT2G05920.1 subtilase family protein similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to SBT1 [Solanum lycopersicum] (GB:CAA67429.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.427941312845938 -4.12914760639066 0.00171307686879651 1 4.35145150689092 18.4097750217908 -0.427941312845938 0.106569755455263
AT4G02510_at 9.5562212070393 9.60868645221903 9.41874966588849 9.55149721853358 9.67613947303338 9.29854794031093 9.69211510033358 9.8284847645237 9.69629420590345 10.0370443438062 9.16528482441128 9.42123433301014 9.45070607719196 9.16374622689975 9.34828278652805 9.62025671580016 9.18245989002395 9.17358424055775 9.95065075268874 0.106247033512535 0.105756858938393 0.112534507673955 0.104163805393212 0.101291057778784 0.109019439467956 0.105672426515796 0.103338127371510 0.105531810038285 0.102009143702835 0.105390997311576 0.0969221249273118 0.0972635401163075 0.101064151545237 0.098301711467035 0.0969221249273118 0.105435741763208 0.103044922656095 0.104436676437359 4 4 + 1108773 1109305 1109086.091 1104766 1109600 + gene protein_coding_gene FALSE TRUE AT4G02510.1 TOC159 (translocon outer membrane complex 159) An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. similar to ATTOC132/TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132), transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G16640.1); similar to ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120), GTP binding / protein translocase [Arabidopsis thaliana] (TAIR:AT3G16620.1); similar to chloroplast outer envelope protein 86 [Pisum sativum] (GB:CAA83453.1); similar to AAA ATPase; AIG1 [Medicago truncatula] (GB:ABE87459.1); similar to chloroplast protein import component Toc159 [Pisum sativum] (GB:AAF75761.1); contains InterPro domain Chloroplast protein import component Toc86/159; (InterPro:IPR005690); contains InterPro domain AIG1; (InterPro:IPR006703) -0.382056010291938 -4.12828192685273 0.00171557446829562 1 4.35018482980577 19.1839839715364 -0.382056010291938 0.073735618374776
AT1G10430_at 6.4995915295856 6.67828240068062 6.56066737598056 6.76861133624004 6.00735411646964 6.31819324861422 6.4906160756223 6.28543097458294 6.24056385887208 6.10369247479974 7.11036765653198 7.06964684285702 7.29228126967987 7.1259007037505 7.27940112058387 6.79941615800916 7.2319732739218 6.64980572915638 6.30250431988168 0.195257780059446 0.19338021614119 0.19338021614119 0.198363661969026 0.203682924411574 0.194264131796108 0.199262617947888 0.199064516703461 0.214905419814123 0.210624543180873 0.196293115829892 0.194386759901941 0.19338021614119 0.196683009620943 0.205489738598960 0.19338021614119 0.201727325699086 0.199983142934266 0.201506422701397 1 0|1 /|- 3428716 3429487 3428938.889 3428479 3430634 - gene protein_coding_gene FALSE TRUE AT1G10430.1 PP2A-2 (protein phosphatase 2a-2); protein phosphatase type 2A Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. Identical to Serine/threonine-protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) (PP2A1) [Arabidopsis Thaliana] (GB:Q07098); similar to PP2A-1 (protein phosphatase 2A-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G59830.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.389744242000868 4.12644551183292 0.00172088535804946 1 4.34749738277472 13.0938113716366 0.389744242000868 0.0800353049131099
AT1G09815_at 7.71330048160662 7.97381960406093 7.87783410445657 7.75541635952852 8.23808839711875 8.30932357167973 7.2069854116695 7.5893660721015 6.57434019054445 6.7922120028483 7.04381656534073 6.98354414774702 7.22342320801293 7.21599347129981 6.8471574686325 7.15090819231415 7.07661196279966 7.22282404189997 6.82620416082744 0.155999085321643 0.153718580695001 0.151138544516604 0.159480985886660 0.156752616444102 0.156488005337172 0.169288232561632 0.159657478418297 0.170543006879481 0.15347144029893 0.154274600860931 0.152602492476221 0.153331218776575 0.150808091881997 0.157516141828413 0.158499573436124 0.162912970290334 0.151589101798971 0.159964881634950 1 1|0 +|/ 3189517 3190026 3189801.7 3189371 3190244 + gene protein_coding_gene FALSE TRUE AT1G09815.1 DNA polymerase delta subunit 4 family similar to Os09g0520100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063696.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09725.1); contains InterPro domain DNA polymerase delta, subunit 4; (InterPro:IPR007218) 0.39445690667602 4.12510865207899 0.00172476233015803 1 4.34554067617732 14.7462435837757 0.39445690667602 0.083738742644456
AT3G60480_at 6.08134310066456 5.37964491926721 5.12709215365417 5.10098746535164 5.543426499773 5.27431322546367 4.98823825967726 5.65546460592779 6.45309741098238 6.15654315991325 5.39672325748896 5.28848584493474 5.24639096415109 5.92774369248931 5.56734212210354 5.40362747566698 5.03191575668446 5.08377556483819 5.99293581190969 0.194482994852794 0.195935560013582 0.194346906512591 0.202323002620772 0.192410270059954 0.205451546462580 0.194506803707203 0.192837869679491 0.205977965669320 0.194071076747062 0.191233138844683 0.191233138844683 0.193388197402533 0.191233138844683 0.197039433775720 0.194703756784151 0.197502709698553 0.197014233856964 0.198737415736095 3 3|0 -|/ 22358756 22359154 22359021.9 22358426 22359214 - gene protein_coding_gene FALSE TRUE AT3G60480.1 similar to Os04g0549400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053483.1) -0.548663047398684 -4.12485031466151 0.00172551257424385 1 4.34516252736949 11.1783684682540 -0.548663047398684 0.173975869052160
AT3G55940_at 2.38031456238173 2.14063124608106 1.89576514570020 1.85509977207792 1.78259979960221 1.73945162420041 3.08965815370964 2.64511940476564 2.06526883307837 2.33023584918938 2.15928970046363 2.15618359803976 2.17881672339395 2.09531130797491 2.06275024266636 2.37610589263546 2.20960494152881 2.44062267999589 2.39759892850006 0.181058335063177 0.180893726144133 0.182886366074689 0.188880448770262 0.179118162627770 0.183609833043344 0.180783380476872 0.190808860515891 0.18782746369309 0.190023160369644 0.181460783297737 0.182644039008627 0.179408650388740 0.179866858362469 0.191065896616043 0.179895418601426 0.18708591185288 0.182836240981572 0.186369172195474 3 3 + 20760329 20761123 20760820.364 20758766 20761163 + gene protein_coding_gene FALSE TRUE AT3G55940.1 phosphoinositide-specific phospholipase C, putative similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT2G40116.1); similar to ATPLC2 (PHOSPHOLIPASE C 2), phospholipase C [Arabidopsis thaliana] (TAIR:AT3G08510.2); similar to phosphatidylinositol-specific phospholipase C [Glycine max] (GB:AAA74441.1); similar to phosphoinositide-specific phospholipase C P13 (GB:AAB03258.1); similar to phosphoinositide-specific phospholipase C [Brassica napus] (GB:AAD26119.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909); contains InterPro domain Phosphatidylinositol-specific phospholipase C, Y domain; (InterPro:IPR001711); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoinositide-specific phospholipase C (PLC); (InterPro:IPR001192); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.400116995378960 -4.12408157696964 0.00172774709964694 1 4.34403720621057 4.42818171661149 -0.400116995378960 0.0879993139532347
AT2G17450_at 8.68588681276177 8.90746782564304 8.23801865377552 8.49354998918981 9.16234339101723 9.04885080771906 8.36228963818535 8.34239626169859 8.49374276091486 7.78102699626202 8.6490944534798 8.8262282508412 8.42768810914904 8.56754660944686 8.8086712034858 8.44280669438832 8.50466041424597 8.78117711811804 7.87771283624113 0.139741632285142 0.137378241775050 0.142512164759913 0.146169208834832 0.136644419971371 0.149327890280627 0.142797527829605 0.140660869579029 0.154102838877298 0.142442750216421 0.139211932210551 0.134060179498286 0.144164161028283 0.144254796876183 0.14179235019812 0.136116952553785 0.151793321837777 0.139067736798325 0.143703428552854 2 2 - 7583801 7584177 7583964.364 7583556 7584382 - gene protein_coding_gene FALSE TRUE AT2G17450.1 RHA3A (RING-H2 finger A3A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA3a. Identical to RING-H2 finger protein ATL2A (RING-H2 zinc finger protein RHA3a) (ATL2A) [Arabidopsis Thaliana] (GB:O22755); similar to RHA3B (RING-H2 finger A3B), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G35480.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78080.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.368168575679134 4.12356591097814 0.00172924770192354 1 4.34328229580105 16.9935062413907 0.368168575679134 0.0618342310492201
AT3G18760_at 5.71211810605572 6.25755786710745 5.53281865431372 5.87808702809825 4.60383379151802 4.61699173617059 5.4803394656315 6.10836112238454 4.41285926592127 4.26659945042987 3.95953710916911 4.22249964007309 3.68443983530846 3.78867168257682 4.58973709677537 4.13424985416775 4.17474216558299 4.38786078923027 4.55846487181101 0.218688504299769 0.222482565298638 0.220381995427097 0.232932149304588 0.219857722465079 0.220281587770406 0.227046907799333 0.23280009735808 0.227453983459517 0.223996267787039 0.223751235840059 0.217519954683400 0.219470776350965 0.219003714693985 0.217519954683400 0.223426954518752 0.22937348693141 0.233317295388477 0.218906735656254 3 3|0 -|/ 6457970 6459535 6458618.4 6457696 6459633 - gene protein_coding_gene FALSE TRUE AT3G18760.1|AT3G18760.2 ribosomal protein S6 family protein similar to Os01g0220300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042425.1); contains domain Ribosomal protein S6 (SSF54995); contains domain no description (G3D.3.30.70.60) -0.513292631106613 -4.12316000740744 0.00173042984916137 1 4.34268804425488 9.78894270524224 -0.513292631106613 0.155874046299028
AT1G71910_at 5.02255110466655 5.53689499792935 5.83911522805832 6.07930830478675 4.93539327660865 4.69015946342195 3.83992622342536 4.11403745664385 4.52270767687657 3.92064477311908 4.41160616659122 4.03172273391744 4.4416567964545 4.09983549560934 4.21340090218475 4.36735961418056 4.26755018737768 4.32999289592782 3.97620425771419 0.272738092829346 0.280184276491524 0.292132069633349 0.288225087718320 0.279899567611028 0.283294544760831 0.270698924509297 0.269108233749463 0.303428094795619 0.269108233749463 0.272374479392256 0.269108233749463 0.269108233749463 0.269108233749463 0.279903888390642 0.276500120183074 0.269108233749463 0.275617476921402 0.274823037791207 1 1 + 27068889 27069376 27069128.6 27068594 27069609 + gene protein_coding_gene FALSE TRUE AT1G71910.1 unknown protein 0.444089992839888 4.12274300988501 0.00173164518452158 1 4.34207752516724 9.21229467440944 0.444089992839888 0.117054428650868
AT1G57600_at 5.84670370836291 5.96872741785836 6.03563828802115 6.07659963115276 6.43222327000504 5.97432681111161 6.07500018024635 5.7554810650139 4.85377305596072 5.52138265518536 5.52378596131435 5.79952257238166 5.74973633748802 5.76857429291554 5.6897376959491 5.59768036405206 5.95487296265453 5.84504175036803 5.00703684470199 0.229699537104189 0.221688247473086 0.238656613722232 0.232756057275694 0.226391797641580 0.227744875342036 0.221688247473086 0.233164395055326 0.238223850952551 0.231603783189707 0.221688247473086 0.228707979812555 0.223057526745529 0.238310925951456 0.228553917569490 0.225688192196732 0.227852590018386 0.22846202900134 0.225755570086032 1 1|0 -|/ 21334395 21335997 21335003.667 21334177 21338392 - gene protein_coding_gene FALSE TRUE AT1G57600.1 membrane bound O-acyl transferase (MBOAT) family protein similar to Os05g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054621.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90199.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) 0.415970190363325 4.12261833353851 0.00173200872551045 1 4.34189498354805 11.4548458018497 0.415970190363325 0.0991603600212774
AT3G01960_at 4.7377842814101 5.73221620491619 2.89462526455805 3.17562500377156 3.64616046946864 3.3520818452679 6.07924428828568 5.7391004180586 1.80087322876056 2.13881637496254 1.78332165280514 4.38633887906635 3.62860877776634 3.1066159816725 2.77560984298692 5.17230078446782 3.05968067160581 2.62553221184732 2.63909880795471 0.260203056518325 0.249148859687471 0.264717137463983 0.250017796978231 0.239607247443500 0.251561939795306 0.258260591887107 0.271921580436390 0.247581054307761 0.239607247443500 0.239607247443500 0.245916672801842 0.239607247443500 0.251614447145867 0.251683475818743 0.246109039004829 0.240330719506499 0.244561043907296 0.240533437162293 3 3|0 -|/ 324600 325035 324821.3 324588 325094 - gene protein_coding_gene FALSE TRUE AT3G01960.1 unknown protein -0.590320761341549 -4.11815305382391 0.00174508158143792 1 4.33535572357646 7.17469500738536 -0.590320761341549 0.195025449903712
AT2G17033_at 7.61224360750124 7.85634275434596 6.96992919838832 7.1421305712177 7.90883326047188 7.44963154937505 8.21444522550546 7.71659826526956 7.68887794154794 7.54748184006816 7.0813345244391 7.26596901004291 6.9326457074681 7.21702182099974 7.0814527876202 7.16575325714046 7.05933460075811 6.94462264680516 7.37073294964471 0.178917729172376 0.163489401160399 0.167641996659739 0.168167647384844 0.165094847398738 0.163432775954387 0.170041916160156 0.167625664575873 0.16789734309911 0.169615949099401 0.169490809413742 0.166089870426367 0.161713362288520 0.161727662719732 0.169570479686226 0.160890524350752 0.168231193510101 0.169970213206946 0.168766868945801 2 2 + 7409720 7410193 7409908.455 7408220 7410728 + gene protein_coding_gene FALSE TRUE AT2G17033.1|AT2G17033.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53170.1); similar to EMB2750 (EMBRYO DEFECTIVE 2750), binding [Arabidopsis thaliana] (TAIR:AT3G06430.1); similar to pentatricopeptide (PPR) repeat protein-like [Cucumis melo] (GB:AAU04769.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625) -0.462228550485015 -4.11808723961756 0.00174527503173393 1 4.3352593184146 14.9233764897575 -0.462228550485015 0.128102014261623
AT3G12830_at 5.87131249478994 6.30672859561032 6.36750253736544 7.03758958835399 4.84050913197815 5.47946003539692 2.10981687132075 2.96530651421424 4.94608237606134 3.7650095083436 4.29279974895047 3.85991161997985 3.16123365743169 3.67523957110883 3.27029873639094 3.7493502975356 4.16967197566790 3.05591418055948 3.11038816675927 0.320717973878094 0.318687194625038 0.334442304216658 0.326638933781261 0.320075269451274 0.325911564550922 0.322353558048800 0.319491417052623 0.326492096914819 0.33124537214888 0.319478241260114 0.315491625453896 0.319985484638298 0.315491625453896 0.316455048631156 0.315491625453896 0.316493860720484 0.322427635332976 0.326778578672877 3 3 - 4079127 4079498 4079295.909 4078658 4079615 - gene protein_coding_gene FALSE TRUE AT3G12830.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G56150.1); similar to putative auxin responsive protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07108.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.665891663677422 4.11795792894574 0.00174565518487592 1 4.33506990124577 8.9196761330493 0.665891663677422 0.230800989550688
AT4G01570_at 4.85659276450303 4.35162681528804 4.50625074284783 4.20293242351527 4.69127983055895 4.6054249051593 5.55008106942734 5.22042613045042 4.89184744864595 4.99434378324042 4.9814286567227 4.75666703617616 4.48272693205904 4.65320370065304 4.66780143041127 4.85052260025508 4.33012761745677 4.20715804769079 5.15103920284463 0.207111133851104 0.207747430858839 0.202554715383880 0.210251882474271 0.208812662410403 0.209978377165658 0.200719945991945 0.207644167357177 0.211420028190018 0.208316505860712 0.205219793723170 0.210568163645818 0.202848934870154 0.213498151909217 0.204892952103199 0.200719945991945 0.205197480251514 0.219903755284141 0.216059314564135 4 4 + 681312 681773 681505.455 679472 681940 + gene protein_coding_gene FALSE TRUE AT4G01570.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABD33347.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.44470768081455 -4.1177138473571 0.00174637298204092 1 4.33471235824053 9.5623841590130 -0.44470768081455 0.117758079680563
AT3G16570_at 8.72342717842263 8.66213703932473 8.94651013025334 8.98314474637712 9.030272244889 9.6926588553416 8.97486679356088 9.5314134027097 9.63921432810703 9.17106973908665 10.6913440126885 10.1453193549087 10.4564155196610 10.2635559269309 9.94994824353999 9.67013398945849 10.0170032123751 9.92412114368189 9.16775415588088 0.117524240895944 0.126198355624943 0.123223019947575 0.126195478917931 0.126079811740049 0.120343475673625 0.120961378753609 0.116366726525916 0.123199580032413 0.121419244806215 0.117658587902584 0.117852896057348 0.12317338880834 0.120438588032537 0.122681854750489 0.117541475893740 0.117237201800224 0.120520003761685 0.12559578095599 3 3 + 5644755 5645092 5644921.909 5644704 5645420 + gene protein_coding_gene FALSE TRUE AT3G16570.1 RALFL23 (RALF-LIKE 23) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAO27366.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.501951412545748 4.11732289627915 0.00174752333599634 1 4.33413965481607 18.8009252570751 0.501951412545748 0.150228864901794
AT3G19960_at 8.02140927041543 7.73185058992111 7.28370828589634 7.40502506757452 7.95952480270746 7.6023326165744 6.85835129842758 6.87161118654495 6.50570682055945 6.86761506125351 7.43729233735267 7.31206276147783 7.2013495207335 7.42035607426541 7.57256310248977 7.18809647872512 7.78061786034922 7.44713122664538 7.1112730009952 0.155864232686138 0.159613373299338 0.159714489699348 0.159044865977243 0.159522667183993 0.163238616997712 0.168193658820438 0.176693304330266 0.171570772506756 0.158137534823972 0.16795722483775 0.16157268098432 0.159863099054195 0.173172613600934 0.17537056932587 0.157046380921471 0.164403749187097 0.159058096314467 0.160151607237656 3 3 + 6956171 6956672 6956419.909 6948782 6956972 + gene protein_coding_gene FALSE TRUE AT3G19960.1 ATATM (myosin 1); motor member of Myosin-like proteins similar to ATM2 (ARABIDOPSIS THALIANA MYOSIN 4) [Arabidopsis thaliana] (TAIR:AT5G54280.2); similar to VIIIB (Myosin-like protein VIIB), motor [Arabidopsis thaliana] (TAIR:AT4G27370.1); similar to VIIIA (Myosin-like protein VIIA), motor [Arabidopsis thaliana] (TAIR:AT1G50360.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71526.1); similar to myosin VIII ZMM3 [Zea mays] (GB:AAD31926.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.391788741423194 4.11663531984535 0.00174954841370386 1 4.33313236999338 14.5907926220198 0.391788741423194 0.0823282119984094
AT3G45040_at 8.105727603472 8.44059272397264 8.29725737556246 8.72894990278676 8.61043475841365 7.89598676576166 6.2376776342897 6.30095088466092 6.67422036674022 6.05105839996481 6.63041950179687 6.28005790839556 5.91895229511676 6.47730193894109 6.10219709564945 6.97593643521028 6.23539313192991 5.72956347586538 6.41513986539815 0.274102946070933 0.274102946070933 0.28419600292537 0.279792207610678 0.27485058665051 0.299341096170492 0.280106462636274 0.278765741215263 0.299452392696769 0.279060840689527 0.280843538188252 0.278412997823367 0.275757419983393 0.277147162082079 0.277140469812152 0.276046044474798 0.281189733192561 0.274482275299207 0.278407554279354 3 3|0 -|/ 16483808 16484488 16484117.5 16483647 16486738 - gene protein_coding_gene FALSE TRUE AT3G45040.1 phosphatidate cytidylyltransferase family protein Encodes a putative dolichol kinase. similar to unnamed protein product [Macaca fascicularis] (GB:BAE91315.1); similar to KIAA1094 protein [Homo sapiens] (GB:BAA83046.2); similar to Os02g0146500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045877.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) 0.51275408393054 4.11644647618041 0.00175010503215192 1 4.33285570565773 14.1641308395637 0.51275408393054 0.156030880041381
AT1G01290_at 4.96260559303803 6.07954208349141 6.38151469998911 6.63587980763002 6.87583430727916 6.53778330171797 5.69403162152589 5.97656150809866 5.37531387047493 5.60422324217236 5.82729941581075 5.73572952767927 5.84958987741466 6.32990764974576 5.45361802939015 6.62056393760119 6.64634551134023 5.22920248816992 5.93609728520339 0.234078535718277 0.221873690618816 0.227231942655368 0.221873690618816 0.229812057919208 0.23255149969469 0.225557652572347 0.235276806410316 0.233773146590514 0.221873690618816 0.222451706213373 0.222870981365479 0.222905895292822 0.231928171987882 0.232989220449502 0.221873690618816 0.243391563548974 0.228075870700884 0.225576988575766 1 1 + 114831 115268 115084.364 114286 115549 + gene protein_coding_gene FALSE TRUE AT1G01290.1 CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria Identical to Molybdopterin biosynthesis protein CNX3 (Molybdenum cofactor biosynthesis enzyme CNX3) (CNX3) [Arabidopsis Thaliana] (GB:Q39056); similar to Molybdopterin cofactor biosynthesis MoaC re (GB:ABE77419.1); contains InterPro domain Molybdopterin cofactor biosynthesis MoaC region; (InterPro:IPR002820) 0.626277541487998 4.11617884244209 0.00175089420159125 1 4.33246360122891 11.9430075423101 0.626277541487998 0.212395985786777
AT1G26730_at 2.97376134411834 3.42356906987418 2.94641418248429 2.63670230566932 3.25296721111342 2.49634856776499 3.91918051902784 3.68524810848451 4.08599749152933 3.84867275731373 3.83267597688968 3.45255105202898 3.59457255075723 3.93053827420675 3.43228050399762 3.47144129841292 3.08492910871401 2.85344044216031 3.62975075592560 0.226268892307483 0.233254426848116 0.231479512247125 0.223296740131515 0.228709932999558 0.234344499900487 0.231996580756418 0.230367695599099 0.238496417419696 0.226813318019412 0.222417850631158 0.223495111426355 0.231011125438735 0.230093295013765 0.237396619247658 0.230411146844624 0.230115939818392 0.228923649886811 0.230932242276754 1 1|0 +|/ 9243912 9244588 9244183.5 9241422 9244637 + gene protein_coding_gene FALSE TRUE AT1G26730.1 EXS family protein / ERD1/XPR1/SYG1 family protein similar to SHB1 (SHORT HYPOCOTYL UNDER BLUE1) [Arabidopsis thaliana] (TAIR:AT4G25350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.532792522155913 -4.11617011247465 0.00175091994982818 1 4.33245081096096 6.82245423980986 -0.532792522155913 0.166478638840112
AT3G49470_at 9.70606315689072 9.6588198068391 9.39035151781067 9.2738238710997 9.59007073480287 9.59390250808146 10.0261032778068 10.1273099083556 9.90045108460483 9.978942709437 9.65359944035097 9.64749211233956 9.65343414000012 9.6589214283148 9.75695672440451 9.69938999750113 9.49924897080758 9.65949075264884 9.87231504396726 0.095989624321695 0.0965968126354555 0.095884072806663 0.102334898279233 0.0966890080014145 0.102760835175888 0.0957194996581694 0.100497938266136 0.099727082775324 0.0951734269655822 0.0983681746045693 0.0953380577633068 0.0970633425400345 0.0972000269605086 0.0948088191600496 0.0940239904934652 0.0979037831235655 0.0972498842691783 0.0971310239277123 3 3 + 18352115 18353175 18352950.364 18351961 18353466 + gene protein_coding_gene FALSE TRUE AT3G49470.1 nascent polypeptide-associated complex (NAC) domain-containing protein Identical to Nascent polypeptide-associated complex subunit alpha-like protein 2 (NAC-alpha-like protein 2) (Alpha-NAC-like protein 2) [Arabidopsis Thaliana] (GB:Q94JX9;GB:Q9S7G0); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.1); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABE85161.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.340603231532399 -4.11439330089667 0.00175616872452076 1 4.32984736841181 19.456207085277 -0.340603231532399 0.0279407412337016
AT4G16450_at 9.69659658836778 9.89441754869122 9.94803763658654 9.83598326801498 9.77010516709147 9.61486448468995 9.41110250941863 9.69604704448887 9.4178602394946 9.4747231630955 10.0326977127782 10.1690283499311 9.90902474012258 10.0276780643853 10.1870546076765 9.98553900343497 9.77948052856576 9.91002423970295 9.21358244034107 0.108450826571662 0.105333086470371 0.103062418909590 0.108906916633905 0.111552487919987 0.109374232219361 0.104311149529458 0.102605389347519 0.107462021244589 0.110590957492022 0.106250693586215 0.100411489568112 0.106217944595746 0.108455770869304 0.104956085429906 0.105028383530045 0.1081526035056 0.108139625047401 0.103907925779886 4 4|0 +|/ 9280156 9280493 9280344.5 9280096 9280740 + gene protein_coding_gene FALSE TRUE AT4G16450.1 similar to Os08g0431500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061863.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99342.1) 0.374525337267529 4.11235371882811 0.00176221397828556 1 4.32685832378197 19.4177882076529 0.374525337267529 0.0685659899422986
AT3G12600_at 6.48544354182987 6.83517076654585 6.60402385955935 6.56597263492075 6.91067928237043 6.82369820472407 5.08741077318717 5.45873523738804 6.78954599012816 6.29448472670036 6.94012537826238 6.69136648114859 6.4136692671417 6.7194173206099 6.67390330945265 6.06932601884502 6.39713453339628 6.41614540708875 6.40635894615686 0.200953625070107 0.199508011588349 0.195490463500714 0.196928091836055 0.205016155122020 0.203139561609466 0.198245010662059 0.200930744506916 0.215588950280199 0.193725634875314 0.193725634875314 0.198668300441643 0.205987910410128 0.195075031832295 0.203674931485472 0.193799850687061 0.209391807642892 0.200468927059533 0.197682215377696 3 3|0 +|/ 4004842 4005923 4005537.3 4004519 4006205 + gene protein_coding_gene FALSE TRUE AT3G12600.1|AT3G12600.2 ATNUDT16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase|ATNUDT16 (Arabidopsis thaliana Nudix hydrolase homolog 16) Identical to Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-) (AtNUDT16) (NUDT16) [Arabidopsis Thaliana] (GB:Q9LHK1); similar to ATNUDT12 (Arabidopsis thaliana Nudix hydrolase homolog 12), hydrolase [Arabidopsis thaliana] (TAIR:AT1G12880.1); similar to NUDIX hydrolase [Medicago truncatula] (GB:ABE87403.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.401371412910309 4.111539904388 0.00176463215365846 1 4.32566549035481 12.8648580469765 0.401371412910309 0.089789290659006
AT1G65500_at 8.37049056669405 8.94909932915454 6.88710829960383 6.99268068849744 7.29582032384048 6.99104129557991 3.4239347635748 3.64330588163179 3.68840710603238 3.01402335463251 2.86555983350136 3.51008060055037 2.67862985819098 3.06946031079856 3.36435349311455 3.69503255439965 2.58726340684317 3.42443481522329 2.88678688200143 0.405331414680436 0.41072001300872 0.397785660091306 0.400019760804495 0.40201060567258 0.394835305669471 0.377925729136623 0.383503708324132 0.379810020964874 0.377925729136623 0.379286283560012 0.377925729136623 0.382141077932635 0.377925729136623 0.377925729136623 0.377925729136623 0.384190452741116 0.381869074319279 0.377925729136623 1 1|0 +|/ 24361558 24362005 24361805 24361530 24362279 + gene protein_coding_gene FALSE TRUE AT1G65500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65490.1) 0.448950547402794 4.11086874317335 0.00176662905287709 1 4.32468167379347 9.74206396355536 0.448950547402794 0.120760363245495
AT4G39460_at 7.49338480599556 7.64531248223257 6.55108228493506 6.188883896628 6.89887744021012 6.78489865089676 7.30625724069903 7.36573819890267 7.46426160755323 7.80838441487644 7.68404651132405 8.30089520739696 7.68398680145678 7.53890947500698 8.38192367749304 7.9548545677784 7.31416820888194 7.63591922047282 7.88873899132233 0.189456789612652 0.179351657014197 0.192849658622789 0.193799029968342 0.187601023667451 0.202364907923987 0.174842779327726 0.176754329035598 0.196074885389143 0.183262029039194 0.179858524815789 0.180470146650052 0.178852968574369 0.180670476536665 0.185739438798694 0.173146348160655 0.186463216164938 0.186431195197090 0.179384193020800 4 0|4 /|- 18356117 18357333 18356782.143 18355987 18358887 - gene protein_coding_gene FALSE TRUE AT4G39460.1 SAMC1/SAMT1 (S-ADENOSYLMETHIONINE CARRIER 1, SAM TRANSPORTER1); S-adenosylmethionine transporter/ binding Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway. similar to SAMC2 (S-adenosylmethionine carrier 2), binding [Arabidopsis thaliana] (TAIR:AT1G34065.1); similar to Os07g0295000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059405.1); similar to Os05g0361900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055312.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_502002.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.377680663157134 -4.10948961234064 0.00177073977012213 1 4.32265987420201 14.795454190051 -0.377680663157134 0.0715197135768388
AT1G19950_at 3.16853104306712 3.16105496129719 2.04719035779056 2.42772717646834 2.47202868272106 2.42987893733261 3.51929784383672 4.01240039959526 4.12576393375484 3.7893052321466 4.8403188185847 4.50375373409896 3.91914292735805 4.43231884601126 4.7888792466196 4.03470613593378 3.96122348548692 4.14303642924407 4.27421201371634 0.238336319419075 0.226830873193520 0.245521548046716 0.234478407473241 0.235242142123664 0.235205441431416 0.229933774081664 0.229976931668852 0.228929029375447 0.223460575094308 0.232442885930478 0.247784169053777 0.227365936142272 0.228157494065745 0.237411589038471 0.227986360157341 0.230333279965478 0.23607341034662 0.224896945081364 1 1 + 6925826 6926416 6926174.273 6924175 6926715 + gene protein_coding_gene FALSE TRUE AT1G19950.1 abscisic acid-responsive HVA22 family protein Identical to HVA22-like protein h (AtHVA22h) (HVA22H) [Arabidopsis Thaliana] (GB:Q8LEM6;GB:Q94AY5;GB:Q9LNS4); similar to abscisic acid-responsive HVA22 family protein [Arabidopsis thaliana] (TAIR:AT5G42560.1); similar to TB2/DP1, HVA22 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94986.1); similar to Os03g0132300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048869.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) -0.428143023496512 -4.10891288905432 0.00177246174288005 1 4.32181431626023 7.10027176499182 -0.428143023496512 0.108043626382826
AT4G13530_at 10.6156806547017 10.6094457131359 11.1837053755406 11.1654417424514 11.3156212278488 11.2947735824634 10.8915789337819 10.9022247421333 10.5604508575696 10.8848806053155 11.0267314136485 10.5814548459307 10.9883902051308 10.9473750980361 10.4725059110481 10.9865114537372 11.2224632250763 10.9655809379493 10.7078082521875 0.086403818838193 0.0820806680903624 0.0843247732194689 0.0830124416699108 0.082637986293632 0.0820806680903624 0.082743422307847 0.0820806680903624 0.0900430241058712 0.083284632833596 0.0866436083156809 0.0824190445864934 0.0856391584573457 0.0871438978953799 0.0918367971163877 0.083161718141875 0.0836445678054016 0.084044268176276 0.0876647719006232 4 4 + 7867023 7868496 7867690.273 7866715 7868738 + gene protein_coding_gene FALSE TRUE AT4G13530.1|AT4G13530.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10080.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82228.1) 0.333158184549962 4.10829919030717 0.00177429603520531 1 4.3209144925466 21.8056039338457 0.333158184549962 0.00525012697030267
AT2G02850_at 1.94939129147802 2.03174047243283 1.84698518144488 1.63487515983641 1.34961063246348 1.39048486698243 1.95786148121565 1.73124507190601 1.41155629276444 2.36267376701606 1.87075130209803 1.73360958475431 1.45051127753519 1.30742209294377 1.94347092362524 1.08206697137494 1.66878167522701 1.79624287807491 2.12496606699998 0.220816461285798 0.221327184754251 0.215890442485305 0.222281660467938 0.215890442485305 0.220668236069074 0.231166627508012 0.220859219020069 0.220655005982542 0.223008219327622 0.216222356568414 0.220308680307716 0.229227761464885 0.219713133280886 0.219251147544407 0.22059579574513 0.221909223966621 0.225225479475995 0.218999989703048 2 2 - 826629 827683 827356.182 826403 827811 - gene protein_coding_gene FALSE TRUE AT2G02850.1 ARPN (PLANTACYANIN); copper ion binding Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil. Identical to Putative basic blue protein precursor (Plantacyanin) [Arabidopsis Thaliana] (GB:Q8LG89;GB:O64499;GB:Q8S8T5); similar to plastocyanin-like domain-containing protein / mavicyanin, putative [Arabidopsis thaliana] (TAIR:AT5G26330.1); similar to basic blue copper protein [Cicer arietinum] (GB:CAA10134.1); similar to Os03g0709300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051044.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.360931119899491 -4.10790662586324 0.00177547041474925 1 4.32033887318425 3.52302716828546 -0.360931119899491 0.0560220871666658
AT3G19480_at 6.81522303944946 7.02889889184364 6.87133832908935 6.79186048651283 7.13477810380612 7.01443609305532 8.5109561144678 8.57087665783543 8.27858240160282 8.3325680749492 8.22860333336499 8.30673104487626 8.23082184440257 8.36058836679313 8.33617813199966 8.81392618095675 8.1372113525944 8.35961331915702 8.20500132630865 0.159466107749348 0.147629588173536 0.165998497702568 0.153890819813642 0.154475339758113 0.151497265614942 0.157303251237204 0.158266067366062 0.154312115091686 0.151240199042064 0.142250554548208 0.144537373894832 0.14476315300412 0.154860246052016 0.143996030123170 0.142250554548208 0.156691591940221 0.144860982625977 0.143704266129526 3 3 + 6754095 6754607 6754303 6752537 6754791 + gene protein_coding_gene FALSE TRUE AT3G19480.1 D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to EDA9 (embryo sac development arrest 9), NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34200.1); similar to D-isomer specific 2-hydroxyacid dehydrogenase, catalytic re (GB:ABE86334.1); similar to H0212B02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68268.1); similar to putative D-3 [Oryza sativa (japonica cultivar-group)] (GB:BAD37553.1); contains InterPro domain D-3-phosphoglycerate dehydrogenase; (InterPro:IPR006236); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.351863413484318 -4.10778303112790 0.00177584032346743 1 4.32015764079839 15.6516758633683 -0.351863413484318 0.0458012530788364
AT3G11020_at 3.95953114134369 4.25118883196857 3.56691734456422 3.54240833621218 4.78669025684598 4.61187947863329 2.64884898620784 2.70963270114430 3.54256720865255 3.20916242776932 3.27881598337703 3.15258333495954 3.54589111183646 3.12407415120334 3.27914239956074 3.00337799626545 3.69106172742487 3.04865295544548 3.06029988306664 0.227565521736862 0.229654522882640 0.235998541118633 0.216239307883578 0.228391820901707 0.232878184431802 0.228134062424541 0.216239307883578 0.224696128704279 0.222851859729318 0.223003820836705 0.221202465549152 0.21850862519846 0.232020117279631 0.216239307883578 0.217470631757979 0.232158243179570 0.220026968178819 0.221887289993511 3 3 + 3456408 3456952 3456694 3455361 3457220 + gene protein_coding_gene FALSE TRUE AT3G11020.1 DREB2B (DRE-binding protein 2B); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family (DREB2B). The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A. Identical to Dehydration-responsive element-binding protein 2B (DREB2B protein) (DREB2B) [Arabidopsis Thaliana] (GB:O82133); similar to DREB2A (DRE-BINDING PROTEIN 2A), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT5G05410.1); similar to DREB2A-like protein [Arachis hypogaea] (GB:ABC60025.1); similar to DREB2A [Thellun (GB:AAS58438.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.364723444955382 4.10702436423161 0.00177811271229304 1 4.31904512430684 7.02770036661765 0.364723444955382 0.0599275003384334
AT4G32460_at 4.36285756372629 4.78309011635848 2.92370336649346 3.24267659377628 3.53300616522546 3.22335506792767 5.22128036588512 6.27956112804409 3.45234789832189 4.5590965328303 5.78870443315268 6.7057899353933 4.59196390838248 5.01596135859566 5.84201056252506 5.29776847471072 2.9539868098023 4.61258435418619 5.23703594246166 0.235904037460342 0.231551063584719 0.238012274704417 0.237086670355341 0.237864617176957 0.252881036123167 0.233116418021660 0.231551063584719 0.237747788435 0.23920843474028 0.242299713925668 0.247543964329465 0.245373859641892 0.236479160683017 0.236661460564259 0.231551063584719 0.248132080474308 0.244288271157372 0.232731502913461 4 4|0 -|/ 15663050 15663715 15663293.8 15662272 15665019 - gene protein_coding_gene FALSE TRUE AT4G32460.1|AT4G32460.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11420.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.623037945046085 -4.10678728519947 0.00177882344262690 1 4.31869745171283 8.95481947299536 -0.623037945046085 0.211536325028544
AT2G17360_at 9.55235967827574 9.55767345936615 8.70295684582768 9.0747937979886 9.25381599659518 9.00420820124177 9.73560564963864 9.84159813482381 8.93188324757812 9.07946791615523 8.85141872759582 9.40500898413179 8.72061465843935 8.7921860870963 9.48643978024682 8.55099584416627 8.59340183077534 8.60709150684433 8.9518712760816 0.125837129142011 0.128196564114077 0.133096259672456 0.135305440394771 0.128118681326652 0.128487747466880 0.143004254023461 0.131055400064806 0.134051742181797 0.131296656558552 0.130884015740656 0.132828477459805 0.140475862499592 0.131694085965196 0.135495578076130 0.136346016317494 0.137889929506953 0.134309789894982 0.130915928181473 2 2 + 7554350 7555188 7554773.636 7553562 7555395 + gene protein_coding_gene FALSE TRUE AT2G17360.1 40S ribosomal protein S4 (RPS4A) Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribosomal protein S4-2 (RPS4B) [Arabidopsis Thaliana] (GB:P49204;GB:Q42346;GB:Q9FL39;GB:Q9LYQ6); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4E; (InterPro:IPR000876); contains InterPro domain KOW; (InterPro:IPR005824) -0.387355827986213 -4.10639011887447 0.00178001475683569 1 4.3181149948946 18.2721942158115 -0.387355827986213 0.0796482870399556
AT4G23190_at 3.84931788248248 4.07187456274731 3.57600247881514 3.73818079526272 3.58853719085723 3.40278092545502 2.02014324129301 1.67393586844191 4.71740425673874 2.83581709461135 3.87519760903946 4.87567766292242 2.45850043869364 3.58857338134124 4.25314244080696 2.74403016741171 2.57128115731871 3.63700036103453 2.61556945705523 0.260866540120611 0.266750435549737 0.260593209397245 0.261160549199055 0.262242805994083 0.264805128217785 0.263519448633615 0.27413901735799 0.261146643873831 0.253835253340624 0.253835253340624 0.256120044879766 0.256187193793855 0.253835253340624 0.253835253340624 0.253835253340624 0.265266138707849 0.254381409624545 0.253835253340624 4 4|0 -|/ 12141586 12142268 12141826.778 12141043 12143844 - gene protein_coding_gene FALSE TRUE AT4G23190.1 CRK11 (CYSTEINE-RICH RLK11); kinase Encodes putative receptor-like protein kinase that is induced by the soil-borne vascular bacteria, Ralstonia solanacearum. Naming convention from Chen et al 2003 (PMID 14756307) similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23210.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23300.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.391692962521164 4.10597321333089 0.00178126617495781 1 4.31750356459745 6.68510778739744 0.391692962521164 0.083029856267353
AT3G23590_at 7.74252041434285 7.83980185336135 6.99991255597009 7.52499216486938 7.995800472386 7.66925793529273 8.44393844139528 8.45963944727088 9.03473420110195 8.67108887263472 8.77205513097374 8.5052794444472 8.74307000998732 8.84339226448925 8.02463005437301 8.79973922940064 8.02864345420806 8.67319364562773 8.78774810979181 0.178037952960248 0.178705694877836 0.201692292898490 0.182816108890501 0.179894208851552 0.190359489100797 0.176195124907408 0.171663886603556 0.184057914996498 0.171663886603556 0.173017621519768 0.171663886603556 0.171663886603556 0.171663886603556 0.175320327070210 0.171663886603556 0.185373046823303 0.176135312474288 0.171663886603556 3 3 + 8472905 8473450 8473134.364 8467456 8473634 + gene protein_coding_gene FALSE TRUE AT3G23590.1 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G48110.1); similar to Os07g0681500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060654.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80015.1) -0.42821212364208 -4.10487968594567 0.00178455295992177 1 4.31589968309586 16.52445330996 -0.42821212364208 0.108356105114998
AT1G19150_at 10.6051005572112 10.7420941037286 9.91892939443909 9.93391383323967 10.4404211034253 10.3767574709334 11.71870975368 11.8303360883875 11.6988087473724 11.7070079730227 11.9259867943224 12.1454033045216 11.7053472617572 11.9571028473938 12.3919277063640 12.0495172721640 11.7829789820613 11.9650850470053 11.4497671776811 0.0781911787762228 0.0757300769963208 0.0792916496915723 0.0779531456953226 0.0770076991798424 0.0789406025050805 0.0770549383871298 0.0803274034649326 0.0808111130456623 0.0757300769963208 0.0765875570891809 0.0757300769963208 0.0757300769963208 0.0767430062941043 0.0762520489496791 0.0757300769963208 0.0829458672852699 0.0772277685897238 0.0790595447818089 1 1|0 +|/ 6613044 6613641 6613300.333 6612740 6613963 + gene protein_coding_gene FALSE TRUE AT1G19150.1 LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to PSI type II chlorophyll a/b-binding protein (GB:AAA57542.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.342331994659587 -4.10428217862469 0.00178635154341990 1 4.31502324116489 22.5002560971176 -0.342331994659587 0.0326084134003284
AT2G02070_at 7.72617491821075 8.0653072966932 7.16448806499014 7.32353743592331 8.07771614194263 7.80291527650261 7.37194597484273 7.05868102254045 6.91225537094872 6.86611229680241 7.9719850964482 8.05144399531667 7.80238654563212 8.10830449943301 7.61226028594957 7.50795786891744 7.13047939684686 7.16143037554274 6.87158733470569 0.171365213855504 0.168586715499436 0.168854315065844 0.176301937722744 0.172190318570629 0.168036233409021 0.169073857361461 0.170621671837938 0.178289129898232 0.169332793441267 0.169277515032339 0.167812342419745 0.167246935743692 0.1648402600141 0.171556290832387 0.164778443408242 0.178251595380010 0.167107562780896 0.173978372356201 2 2 + 508579 509129 508851.727 505486 509424 + gene protein_coding_gene FALSE TRUE AT2G02070.1 ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5); nucleic acid binding / transcription factor/ zinc ion binding similar to ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4), transcription factor [Arabidopsis thaliana] (TAIR:AT2G02080.1); similar to INDETERMINATE-related protein 9 [Zea mays] (GB:AAV51392.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.410799800313218 4.10338503112123 0.00178905563922294 1 4.31370717803053 14.8496454375373 0.410799800313218 0.0969658990603682
AT1G50260_at 5.94997132944794 6.20325158780889 7.097422091821 6.48660930321938 6.96914427360762 6.79859788117795 6.35242787763227 6.04576879613091 5.41211881083856 6.79034735025173 6.77491438896972 6.67099693764958 6.4515107034148 6.78983839252029 6.4825469168833 6.7780987726651 7.028736980671 5.91415802921664 6.95354159356429 0.268466135128261 0.255522696327694 0.262604016685688 0.255522696327694 0.274309245492124 0.255522696327694 0.255522696327694 0.270645015552213 0.323112444643747 0.255522696327694 0.255522696327694 0.282496848693801 0.271354693295001 0.266277787899087 0.266722978677865 0.257934277063570 0.292315437541639 0.285282146864392 0.255522696327694 1 1|0 -|/ 18621958 18622194 18622076.75 18621261 18625358 - gene protein_coding_gene FALSE TRUE AT1G50260.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19830.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22937.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.463051355866045 4.10322320589871 0.00178954385165426 1 4.31346977709535 12.9862421718392 0.463051355866045 0.129544913449810
AT2G19740_at 9.27247943077107 9.43291531649294 8.79208151120089 9.01636872005717 9.1902396661609 9.17526731743496 8.6683207792672 8.9762563598891 8.51156015474252 8.57694725337937 7.98342780812976 8.0726780360994 7.86191081225758 8.03736900222864 8.07160621818277 7.6400636929908 8.00051415188386 7.57799905975807 8.75953929468078 0.168226043332453 0.168135389690076 0.164372123312528 0.164977388590529 0.164107335315884 0.172461598229353 0.169711815384014 0.172309151630736 0.174412801313764 0.164820514461857 0.178897373489911 0.167670380400183 0.179572140284417 0.178781662288572 0.174858006768785 0.180220386071362 0.178328392041626 0.186459204531498 0.170907531720752 2 2|0 +|/ 8520686 8521389 8521171.5 8520595 8521601 + gene protein_coding_gene FALSE TRUE AT2G19740.1 60S ribosomal protein L31 (RPL31A) Identical to 60S ribosomal protein L31-1 (RPL31A) [Arabidopsis Thaliana] (GB:Q9SLL7); similar to 60S ribosomal protein L31 (RPL31C) [Arabidopsis thaliana] (TAIR:AT5G56710.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) -0.377161568900562 -4.10305514029769 0.00179005103787775 1 4.31322321726912 17.3263469703054 -0.377161568900562 0.0715812577857527
AT1G73330_at 1.04467002186232 1.24907624918247 1.12951164524269 1.29081085920616 0.84859347138941 0.640554416084072 1.51680447608977 1.56468950736140 0.745685480618648 1.52623861638245 0.687344246225587 0.99995122830506 0.90294832028889 0.851611342499238 1.25578343694227 0.963155153002047 0.538330109163072 1.51869961012639 1.69865506949981 0.210644651694555 0.202681849578129 0.202733688729501 0.204418355879336 0.202459018401117 0.199788116976794 0.198600896710664 0.219721451164101 0.213237264958489 0.215030019010291 0.214328390645192 0.208108840204608 0.208620482813339 0.207910607398185 0.203894430167737 0.204182007166493 0.208825640154343 0.200802759111031 0.210254062968978 1 1 - 27572685 27573225 27572997.273 27572379 27573378 - gene protein_coding_gene FALSE TRUE AT1G73330.1 ATDR4 (Arabidopsis thaliana drought-repressed 4) encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level. similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73325.1); similar to drought-induced protein (GB:AAA33012.1); contains InterPro domain Proteinase inhibitor I3, Kunitz legume; (InterPro:IPR002160); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) -0.362620461828986 -4.10212867485185 0.00179284960630316 1 4.31186397514961 2.30471599062864 -0.362620461828986 0.0582689641846015
AT3G58540_at 3.42033232575759 4.29610740185736 4.10445124199196 4.7577971446824 2.67026433132630 2.59872840878818 3.07104573087517 4.37580668186867 4.19716919053274 4.11836262775599 2.59789417887545 3.12844764667024 2.92722061298991 3.12450735020313 2.39108803294063 3.27394406469961 2.76359391296605 4.05971453369644 4.83975953905791 0.233130160961430 0.238852792435708 0.228991616698477 0.233045987170688 0.228215419271265 0.229563135797306 0.229436668615211 0.23328429214988 0.253802837664631 0.231543146460757 0.225525751254134 0.224871894532721 0.227997544715642 0.229315573128231 0.231529675794813 0.224871894532721 0.233546017104168 0.228573697345398 0.233424114071503 3 3 + 21660002 21660171 21660085.182 21659570 21660364 + gene protein_coding_gene FALSE TRUE AT3G58540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06190.1) -0.804904290438925 -4.10177051481331 0.00179393272100097 1 4.3113384747851 7.37101586376632 -0.804904290438925 0.294770637659270
AT3G02600_at 6.92791319065545 6.97681256803679 5.66194078424203 5.67436816609973 6.77920185871974 6.45113756218027 6.310336353668 6.2546812863361 6.66160171518083 6.00935729569603 5.95145919230280 6.4032579045672 6.23887500175428 6.31892044142561 5.86263395867445 6.45765603459612 5.46060931032381 5.75223041363633 6.24414524245785 0.193484647076991 0.188104383688106 0.206040116175227 0.193260053919249 0.189520151264531 0.217491013455219 0.189052155348333 0.190620882008790 0.188701652809647 0.193186918287061 0.189525711155765 0.188421752499183 0.192203552275826 0.193234714362124 0.191548017856448 0.190209536998031 0.221660974190546 0.193121288285364 0.194777632254315 3 3|0 +|/ 553488 554285 553890.667 551107 554678 + gene protein_coding_gene FALSE TRUE AT3G02600.1|AT3G02600.2|AT3G02600.3|AT3G02600.4|AT3G02600.5 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase|LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) Encodes phosphatidic acid phosphatase. Expressed during germination. Identical to Putative lipid phosphate phosphatase 3, chloroplast precursor (EC 3.1.3.-) (AtLPP3) (Phosphatidic acid phosphatase 3) (Phosphatidate phosphohydrolase 3) (LPP3) [Arabidopsis Thaliana] (GB:Q8LFD1;GB:Q9M882); similar to ATPAP2 (PHOSPHATIDIC ACID PHOSPHATASE 2), phosphatidate phosphatase [Arabidopsis thaliana] (TAIR:AT1G15080.1); similar to phosphatidic acid phosphatase alpha [Vigna unguiculata] (GB:AAF89579.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) -0.362551612907569 -4.10164832709417 0.00179430238601035 1 4.31115919388279 12.5599189878781 -0.362551612907569 0.058242409830179
AT3G44450_at 10.4423613452544 10.6305095651774 10.2928391517097 10.4940408669011 10.4346391109769 9.83955506086786 11.1911244834729 11.1164956900146 10.2687788550886 10.7722879668954 10.5081661002947 10.2837935759013 10.2190055437164 10.1653307258125 9.64565603176366 9.78150180140578 10.1398077277891 10.1322791879600 10.1708588475165 0.113320916539053 0.112844900897698 0.121916938454425 0.116391048120803 0.114321912479103 0.122316655150086 0.11356602343733 0.111791261732049 0.125767510242725 0.113027274538741 0.114650271950298 0.113252318489763 0.113750199300937 0.121989684295934 0.125592878718135 0.113566228530154 0.119134726821010 0.118090828320293 0.111728478745229 3 3 - 16085235 16085539 16085349.273 16085083 16085665 - gene protein_coding_gene FALSE TRUE AT3G44450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52740.1); similar to H0717B12.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67161.1) -0.437193429851144 -4.10163993520942 0.00179432777761647 1 4.31114688074166 20.8119045642955 -0.437193429851144 0.114212979655645
AT3G52640_at 4.95702008886097 5.19616975380591 5.28454736464766 5.04775113165588 5.66964552185146 5.19204278721572 5.37480135869594 5.44803334474742 3.74101752523465 4.16577412082202 4.84549048222134 4.8680577122488 4.65256361848187 4.65437287878856 4.78575756483896 4.78006293647246 4.90557497715078 4.35630182383079 3.94206312375076 0.176227594800192 0.176289134868138 0.180860696396905 0.179182265701971 0.180952262743651 0.184986491564285 0.183014890307441 0.177969676692487 0.187544835766173 0.180574448955188 0.182801000837225 0.176562705386284 0.176022365329895 0.184871914420556 0.177705399782908 0.177008985006291 0.188650763727245 0.181608511840271 0.176923552108796 3 3|0 -|/ 19526087 19531242 19528677.684 19525851 19531522 - gene protein_coding_gene FALSE TRUE AT3G52640.1|AT3G52640.2|AT3G52640.3 nicastrin-related Identical to Nicastrin precursor [Arabidopsis Thaliana] (GB:Q8GUM5;GB:Q9LXJ9;GB:Q9LXK0); similar to hypothetical protein DDBDRAFT_0187645 [Dictyostelium discoideum AX4] (GB:XP_637065.1); similar to Os02g0736500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048054.1); contains InterPro domain Nicastrin; (InterPro:IPR008710)|similar to hypothetical protein DDBDRAFT_0187645 [Dictyostelium discoideum AX4] (GB:XP_637065.1); similar to Os02g0736500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048054.1); contains InterPro domain Nicastrin; (InterPro:IPR008710) 0.417947528733418 4.1016044300063 0.00179443521104367 1 4.31109478498926 9.61157192186346 0.417947528733418 0.101901474222678
AT3G15070_at 7.45829235401344 7.40423874659122 7.56374632997405 7.64835960732379 8.14922942277403 8.06040548819867 7.2003029436622 7.0584289714286 7.24337860224936 6.52479917711868 6.9033185380899 6.0425662503183 7.2727029599252 7.31080030670614 6.94941949841216 7.02611180050894 7.33420221170765 6.90169989357787 6.80361281854149 0.164776445924551 0.164383293698045 0.172690367722577 0.170271585315244 0.164567144920371 0.168662238786744 0.164953294139171 0.164425294538152 0.165041675072168 0.168426881648893 0.171957460758089 0.164466020313733 0.168597091050674 0.166892487622987 0.175810075207009 0.16548401254239 0.167452964661444 0.174623914088829 0.171327165881863 3 3 - 5070596 5071366 5071054.727 5070141 5073324 - gene protein_coding_gene FALSE TRUE AT3G15070.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G53190.2); similar to Os01g0667700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043810.1); similar to RING-finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73651.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.342729303956514 4.10063834391848 0.00179736101945238 1 4.30967720298539 14.4803085905169 0.342729303956514 0.033778530267295
AT2G31340_at 2.16385385598385 2.23328675860475 1.92278467725518 2.03151416629398 1.92647651295952 1.67568812599457 2.81621004527013 2.61471630954018 2.05531166497913 1.91596637895897 1.71916233380002 1.79791221785359 1.71381504623837 2.01485831791324 1.85668768160674 1.82172795202793 1.75738650273594 2.24317680934721 2.10617859158880 0.183557497346289 0.180625770655332 0.176461276605828 0.185186951304426 0.182967861410771 0.176709027149153 0.177838416745648 0.181456989097919 0.187952142661457 0.190171458512881 0.179234502973855 0.179044618286469 0.177009076508600 0.176007034771467 0.180254272023188 0.176045144920006 0.184016750752810 0.183722265815196 0.179811991436974 2 2|0 +|/ 13369224 13372104 13370406.312 13368583 13372277 + gene protein_coding_gene FALSE TRUE AT2G31340.1 EMB1381 (EMBRYO DEFECTIVE 1381) similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33207.1); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.364064446271253 -4.09897650812221 0.00180240556553248 1 4.30723839112144 4.11877117458745 -0.364064446271253 0.0599822469128621
AT4G26060_at 6.85212935490187 7.2538504183352 7.07938336426708 7.57589017663939 7.26462397430724 6.59339917832083 4.79691549067561 5.40622791585367 5.75221050675687 5.2108200776888 5.27857372542668 5.21036918055284 5.23023118762417 5.43589218653976 4.99348392869667 5.82687870496175 5.85430857570572 5.82790381314685 5.07621046318548 0.205128007754052 0.203528564477029 0.191417809285944 0.196014697195367 0.193315325372532 0.195169882689009 0.203296010030149 0.192810386519967 0.196245392720544 0.197971117740336 0.202334233759687 0.193220725919923 0.199172497604065 0.190883598744970 0.194317088160133 0.190391877626862 0.204119439972175 0.19201428580856 0.191549442340068 4 4|0 -|/ 13214983 13215639 13215362.667 13214755 13216470 - gene protein_coding_gene FALSE TRUE AT4G26060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79016.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.580917429365067 4.097063015648 0.00180823231870754 1 4.30442975447351 12.0046119068504 0.580917429365067 0.191903748092422
AT2G37970_at 10.0189893891529 9.9992698543025 10.2674791836985 10.293869677816 9.32398883558025 9.2539410074415 10.0666693233127 10.0190097675105 9.25761895926157 9.61442670337721 8.73666715513895 8.83558674350245 9.37775502220822 8.91597214114949 8.5788214501613 9.4650974665248 9.65807673568382 8.86828879662163 9.57365882209874 0.102081986821027 0.100209896330608 0.100209896330608 0.100209896330608 0.100609185620016 0.103767803216112 0.103630247442918 0.101773971135146 0.103280157642674 0.100209896330608 0.101561994953014 0.103694148226992 0.103675246416871 0.101588685344838 0.102318602515301 0.100209896330608 0.104635532518226 0.101926624138530 0.104200580875686 2 2 + 15898209 15898737 15898463.818 15898050 15898921 + gene protein_coding_gene FALSE TRUE AT2G37970.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT3G10130.1); similar to SOUL heme-binding protein; Bacterial regulatory factor, effector [Medicago truncatula] (GB:ABE83861.1) -0.334266606737132 -4.09686340085365 0.00180884129400641 1 4.30413672726055 19.173619471745 -0.334266606737132 0.0157312778760978
AT2G27040_at 5.56584442034619 5.20589546031272 4.21692290860293 4.0305971117756 4.50586102468348 5.52838252123557 5.80994072882638 6.17709137918785 6.05575835866079 5.73923093285129 5.82450739254961 6.64394753853699 5.28242921612063 5.59253499237662 7.06430901945491 6.12972300293652 5.86598363407706 6.00821818923924 6.59240311354125 0.216390665176891 0.21681646224176 0.222335967944791 0.214458514030302 0.214458514030302 0.215336641031814 0.214458514030302 0.229375274140224 0.237407968340919 0.224087439463079 0.214458514030302 0.215635416973324 0.226164661273389 0.218179313142198 0.225473245832702 0.214544956717707 0.222350091758065 0.219956913235298 0.214458514030302 2 0|2 /|- 11543922 11544629 11544241.778 11543612 11549435 - gene protein_coding_gene FALSE TRUE AT2G27040.1 AGO4 (ARGONAUTE 4) similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21030.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21150.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G32940.1); similar to AGO4-2 [Nicotiana benthamiana] (GB:ABC61505.1); similar to Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi [Medicago truncatula] (GB:ABE82627.1); similar to AGO4-1 [Nicotiana benthamiana] (GB:ABC61504.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) -0.598463142058444 -4.09394779026209 0.00181776052043382 1 4.29985604358043 11.2203606567943 -0.598463142058444 0.200671069637108
AT4G04800_at 5.88423685316415 6.40240759508326 6.57122826290341 6.93155524271343 7.05526805605744 6.47310205556965 6.66491586360826 6.8469278553626 5.67951169994809 5.54034120608192 6.67781131360191 6.10899670209588 6.17663523758458 6.15021276926075 5.9046082927266 5.99914491621486 6.55948619089452 6.13683164049882 5.33523279646768 0.215888051476777 0.214596399737805 0.212389037392495 0.213171125698624 0.223000880538413 0.212735466358042 0.220832282917586 0.217899620401864 0.231330567130407 0.208661489502417 0.214513065085863 0.214623587982366 0.214737419286006 0.240521140954874 0.210569498107831 0.211462158285924 0.216028121771004 0.213411100143288 0.219551782974627 4 4|0 +|/ 2439592 2440895 2440303.2 2439548 2441203 + gene protein_coding_gene FALSE TRUE AT4G04800.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21860.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) 0.502010172266798 4.0924450135928 0.00182237560907934 1 4.29764918259818 12.4699941149039 0.502010172266798 0.151892521069269
AT1G73470_at 9.24477578494624 9.02275394928379 9.50018718123195 9.2780196875227 10.0079321769072 9.61938589194896 9.40637552774402 9.17083256790857 9.49842730676732 9.54896154516359 10.0170849509404 9.7212971033202 9.89949639202204 10.1243301559610 9.94499014639779 9.98254223897423 9.96719713453496 9.83502250762605 9.48658091964535 0.104054829772993 0.105492538990512 0.103429736249744 0.105696586173867 0.103207955404234 0.109153421032726 0.104584299183741 0.10568138487577 0.114961293208139 0.104392957465349 0.104977853930825 0.102171759800460 0.102982706835922 0.105909692275103 0.101067205096552 0.107256935890326 0.102867614795881 0.107571620046817 0.101508946641395 1 1|0 +|/ 27629921 27631231 27630499.889 27628810 27631362 + gene protein_coding_gene FALSE TRUE AT1G73470.1|AT1G73470.2 similar to hypothetical protein slr0975 [Synechocystis sp. PCC 6803] (GB:NP_440211.1); similar to Os09g0448900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063318.1) 0.407684299231027 4.09222033231176 0.0018230666638865 1 4.29731920437233 19.1301920138938 0.407684299231027 0.095588352331149
AT4G23920_at 4.54243540570444 4.22201880909864 4.49786075986660 4.16241730204264 4.62382568069353 4.54713175202673 3.89777611220923 4.08520625780989 3.58650607009108 3.60333306802996 4.15655676587803 4.06946907915551 4.32200102808035 4.00946945442971 3.92611623472193 4.16972862779144 4.67562758318672 3.92780934357215 3.71560724585801 0.187139152044217 0.187261842893102 0.188378623242711 0.191312019353265 0.188523163000519 0.189438447415972 0.190748248752348 0.183752079304588 0.188465685162901 0.183752079304588 0.193589518025137 0.183752079304588 0.186044183891006 0.183752079304588 0.183752079304588 0.187897110614054 0.206145389779624 0.185743057781525 0.185353172834035 4 4 + 12432625 12433384 12432961.091 12431287 12433874 + gene protein_coding_gene FALSE TRUE AT4G23920.1 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2); UDP-glucose 4-epimerase/ protein dimerization Encodes a protein with UDP-D-glucose 4-epimerase activity. Identical to Probable UDP-glucose 4-epimerase At4g23920 (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase) [Arabidopsis Thaliana] (GB:Q9T0A7); similar to UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT4G10960.1); similar to UDP-glucose 4-epimerase [Solanum tuberosum] (GB:AAP42567.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) 0.396449098697061 4.09196814176487 0.00182384265480856 1 4.29694881574529 8.2184570395623 0.396449098697061 0.0875938924803063
AT1G56220_at 11.0759877103079 11.2207139284893 10.9271361972416 10.9547567966711 11.7858687348657 11.3848996487581 10.4973560000669 10.5718280966361 10.998686676148 10.8965462816152 11.4198985943551 11.2258140786235 11.2882319029931 11.3886010884627 11.2045432676740 11.1731218577283 11.2657022931196 10.9520490363304 10.8078055802183 0.0995805537521769 0.094421406995623 0.0910720905691663 0.0953668484074101 0.0981031592097335 0.101828595435029 0.0939386462432414 0.0932908215473716 0.0959797719024166 0.0996317279224404 0.0905753821309648 0.0926770558537708 0.092409198528163 0.0945217676042416 0.0944935941157934 0.0897475034864068 0.104155218878815 0.0923066144417305 0.099330754055988 1 1|0 +|/ 21047082 21048092 21047398.111 21047013 21048403 + gene protein_coding_gene FALSE TRUE AT1G56220.1|AT1G56220.2|AT1G56220.3|AT1G56220.4 dormancy/auxin associated family protein similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin associated; (InterPro:IPR008406) 0.380213164713031 4.09135401235146 0.00182573377364926 1 4.29604681330157 22.1226974445819 0.380213164713031 0.0750408757468882
AT2G48020_at 7.99336594892095 8.18836178539821 7.54066746780417 7.52618483098445 8.57629680995252 7.9509102894174 8.7809376479497 8.54203495994022 9.35814214077375 8.90756235089125 8.95496967745757 9.17045999138199 8.73115890333889 8.68450871452219 8.54150429715512 8.97088541173484 8.16556538121091 8.6346915020565 9.1761690505805 0.148023067573845 0.148267900002294 0.161539921488565 0.154021910192130 0.150212116405509 0.170595787242365 0.154694255688342 0.153559155852784 0.154434712040689 0.154836545605566 0.143326044940529 0.145209702998188 0.150039705134627 0.155360319426141 0.159371535124395 0.143326044940529 0.177024896203589 0.156989471264379 0.158122865487489 2 0|2 /|+ 19653414 19654010 19653804.4 19651170 19654250 + gene protein_coding_gene FALSE TRUE AT2G48020.1|AT2G48020.2 sugar transporter, putative Identical to Sugar transporter ERD6-like 7 [Arabidopsis Thaliana] (GB:P93051;GB:Q8LFR8;GB:Q9ZU87); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT5G18840.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.446616715951943 -4.09050255336592 0.00182835909683536 1 4.29479614068162 17.0768495503488 -0.446616715951943 0.120694421412804
AT2G20440_at 2.59555959677368 2.49407171423410 2.85268701951306 2.67588857653644 2.72329712038595 2.63945034318709 3.02460752459074 2.56023243072120 1.85702607388198 2.29722607507671 3.52758426539392 3.13603803514735 3.06931540121975 3.03054826857916 3.19256477780173 3.07931116897991 2.90954108543606 2.16321300363953 2.66041582486764 0.236505883087167 0.236505883087167 0.242779968999627 0.248502020436765 0.242665118332818 0.244536445285907 0.239414515703342 0.237338447066905 0.257599359133913 0.259372053766039 0.236508936540086 0.236505883087167 0.241991412661056 0.240339432546815 0.236505883087167 0.253531487380428 0.256394950534704 0.261864506621282 0.244618336370693 2 0|2 /|- 8818276 8818604 8818487 8817822 8820604 - gene protein_coding_gene FALSE TRUE AT2G20440.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G28550.1); similar to TBC domain, putative [Medicago truncatula] (GB:ABE91156.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.39808572891247 4.08964566374068 0.00183100513939799 1 4.29353738284429 5.33825953676784 0.39808572891247 0.0889561555207832
AT4G25020_at 4.58618971309151 4.57485415428185 5.54155607402326 5.64565026114951 4.72704858376063 4.99383136854372 4.95777655331487 5.00873547136797 4.34405613947556 4.47343075546574 4.47583716418444 4.53662046732220 4.84539268826104 4.51132521006267 4.66984513499861 5.10727314258522 4.96478329922575 4.76766322582116 4.59758387143834 0.181679573586839 0.182157972527950 0.186876321790458 0.181122613078357 0.184452208735145 0.181768381371994 0.184319829601158 0.181403054761526 0.190319583588337 0.185871600628858 0.184266796048382 0.182266899593948 0.184136133008923 0.183583577260273 0.187399288372028 0.187756523272013 0.181122613078357 0.185530692708328 0.181122613078357 4 4 - 12860829 12861336 12861014.818 12860644 12861985 - gene protein_coding_gene FALSE TRUE AT4G25020.1 KOW domain-containing protein / D111/G-patch domain-containing protein similar to MOS2 (MODIFIER OF SNC1, 2), RNA binding / nucleic acid binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G33520.1); similar to Os03g0253500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049580.1); similar to G-patch domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95011.1); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain D111/G-patch; (InterPro:IPR000467) 0.354142442476496 4.08957325146791 0.00183122892866398 1 4.29343100533532 9.60772167095042 0.354142442476496 0.0503746521683815
AT3G46130_at 7.47632031139887 7.19129867582908 8.44252495882769 7.75440099262399 8.5713374414233 8.2057249973059 8.98481033580425 8.50693368412286 8.61027788821652 8.98911129012508 7.67689615937074 7.14943251360922 7.74480009594396 7.7546061129108 6.10246195053028 7.6999406610573 8.22159139106802 7.24384926122369 8.52551756472218 0.143042617284029 0.146387426075258 0.142738139659302 0.139300084397008 0.143679584864187 0.141645376720108 0.145170317094088 0.151514960575208 0.153314613583077 0.146029267962929 0.150624157826582 0.145034326906777 0.149811368587512 0.144223324742657 0.161164890176904 0.143264413309055 0.139362457974192 0.145912292891461 0.141894711552489 3 3 + 16956682 16957336 16957135.455 16956349 16957446 + gene protein_coding_gene FALSE TRUE AT3G46130.1|AT3G46130.2|AT3G46130.3 MYB111 (myb domain protein 111); DNA binding / transcription factor|MYB111 (myb domain protein 111); DNA binding|MYB111 (myb domain protein 111) Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3); similar to MYB59 (myb domain protein 59), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G59780.3); similar to MYB transcription factor MYB139 [Glycine max] (GB:ABH02860.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3); similar to MYB59 (myb domain protein 59), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G59780.2); similar to MYB transcription factor MYB139 [Glycine max] (GB:ABH02860.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.527724316858609 -4.08865656562452 0.00183406440275438 1 4.29208427761848 16.2204186826181 -0.527724316858609 0.165698415410509
AT3G43300_at 5.45219587343069 5.29394608694419 5.37871224699755 4.82879598042637 5.23410084213265 4.96008804968341 4.73922165981132 3.99156414807973 5.10594211745949 5.22606172253994 6.31709786992649 6.84247657745936 6.08344311303793 5.85525176021259 5.91924651633858 6.1343157513996 5.70827645034682 4.83543052825064 5.03573034642498 0.239662791201244 0.232982420004390 0.238063194514862 0.244328277505700 0.233612440813457 0.243862786554910 0.241745465176129 0.234327845110545 0.238634728005521 0.242093030173464 0.242021983292827 0.236151626768168 0.240883791121271 0.237354369542510 0.255672403427595 0.230843360177242 0.254182419953619 0.241990492117076 0.236966757549916 3 3|0 -|/ 15245251 15246006 15245664.5 15244884 15256022 - gene protein_coding_gene FALSE TRUE AT3G43300.1 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAC79659.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) 0.535278298236769 4.08720755406208 0.00183855579826824 1 4.28995524237257 10.5270883024447 0.535278298236769 0.169692929586451
AT3G18380_at 6.01367600701359 6.2125553033937 5.75816260995473 5.53252122852477 5.70845084229181 5.4777319470305 5.68151427012399 6.03618252094136 5.56998860048205 5.32162816232731 4.90304461398302 4.87023331130814 5.22785495748725 5.30371213856861 5.06860547237205 5.12237998384624 5.16976136161619 4.77221175362797 5.5664035300169 0.216912331923411 0.211247731947641 0.213106460508811 0.219685825710811 0.207524547617876 0.211882096667909 0.214687620791409 0.209313183155061 0.205314118928944 0.207970051011118 0.207429403383311 0.211966976383761 0.212490859427543 0.214818902421961 0.205314118928944 0.210162562146204 0.206306109180357 0.20933295017395 0.207066195645125 3 3 - 6311035 6311867 6311342.182 6310742 6313325 - gene protein_coding_gene FALSE TRUE AT3G18380.1|AT3G18380.2 DNA binding / sequence-specific DNA binding / transcription factor|sequence-specific DNA binding / transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15215.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37623.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15215.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37623.1); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.39902334179597 -4.08681845110886 0.00183976382478699 1 4.2893834798337 11.0729654478476 -0.39902334179597 0.0898365054263697
AT3G54190_at 7.70020240308185 8.16452736652219 8.10471832242416 8.37313264386884 9.07282482037573 8.37685648700298 8.19540662174233 7.89241874458955 6.88227470021751 6.82708080412504 7.26165665913079 7.3986973082659 7.71799393546359 7.18346775381074 7.31808832987647 7.51734745022036 7.32573215268215 7.05754259253976 6.70638227419851 0.195070559857547 0.186845818293280 0.191698411553318 0.187449669284395 0.190054954432376 0.194181819085651 0.186388194764528 0.196629416779288 0.203706617694742 0.204940850875976 0.191581088463399 0.192035993190644 0.190903124604900 0.195850729317874 0.186674017898296 0.191311722896900 0.210694419370805 0.196419784602627 0.192290456959666 3 0|3 /|- 20072744 20073295 20073143.6 20072506 20075132 - gene protein_coding_gene FALSE TRUE AT3G54190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38630.1); similar to Os01g0817800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044626.1); similar to Os05g0482600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055867.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56876.1); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.51803206550116 4.08571505997696 0.00184319396607761 1 4.28776199362186 15.3114167756655 0.51803206550116 0.160840089334688
AT2G39400_at 9.5759766293785 9.6371594490056 9.47366124298532 9.39657424015618 9.93390544574709 9.77727281569152 9.27971083043733 9.18569622095423 9.15058193749002 9.22007375660168 9.482306635339 9.4556247769108 9.79452804169898 9.60844280099518 9.3813128405373 9.88008785212704 9.9707499926675 9.42237322242126 9.12300623283366 0.105380142609400 0.101396752771184 0.104764948696764 0.105197063773146 0.106987805176046 0.114911301741676 0.106479440226102 0.102562722492224 0.107506399037112 0.107129655906000 0.107917897182633 0.105172356060309 0.106494648498749 0.102180318560958 0.103750978686056 0.104286804956097 0.110301170888754 0.107130751430423 0.107861668216168 2 2|0 +|/ 16460481 16461655 16461232.2 16459690 16461879 + gene protein_coding_gene FALSE TRUE AT2G39400.1 hydrolase, alpha/beta fold family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G55180.1); similar to Os12g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066522.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.34279597419823 4.08550182843666 0.00184385761318277 1 4.28744861889777 18.9269857322839 0.34279597419823 0.0359096854933384
AT1G06050_at 5.74633648244627 5.66932433066157 5.72999976190783 5.6629886559661 5.093903101241 5.27497030351852 5.00835377524679 5.11294802365202 5.25218598172757 3.98072579750472 3.92678718488532 3.63786786434636 4.11124828434078 4.11645983517584 2.90341112092841 4.42101927236705 3.87071028575632 3.83716904677978 4.56937935771564 0.222873232013324 0.222686613353750 0.22787305416289 0.23646613166407 0.221645824920508 0.227829126841856 0.219442266345202 0.221836120354612 0.226856908070979 0.223976806568804 0.222787573437467 0.223795317232022 0.217503690834096 0.223414156888674 0.230496977710178 0.222981083115105 0.239823698837706 0.237517037520329 0.217793682809559 1 1 - 1830835 1831283 1831037.455 1830604 1832552 - gene protein_coding_gene FALSE TRUE AT1G06050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10750.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10188.1); similar to Os08g0152600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061005.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10187.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) -0.345727398918396 -4.08517354975824 0.00184487981217686 1 4.28696615255962 9.63927696639924 -0.345727398918396 0.0402688379957327
AT1G34200_at 6.78038133194837 7.13537052225897 6.87773301834878 6.60192847047331 7.823705456076 7.48336746729716 6.85080093379824 6.53894142356158 5.58501831470415 5.408188584092 5.68518284469611 6.05870964409918 6.00566683598509 6.44706599161001 5.69460986951608 6.15700238944293 6.50815007830081 5.34967254286543 5.49610296449473 0.252998038406646 0.241796379914761 0.247599480753286 0.250112598059375 0.241796379914761 0.251510457959716 0.244063600941844 0.246046275395629 0.265003415359473 0.244295746328233 0.24520684595869 0.241796379914761 0.246264635276791 0.245555472243749 0.24605313993198 0.241796379914761 0.243031931938134 0.255858795343769 0.245970844067050 1 1 + 12456382 12456824 12456564.636 12455686 12457390 + gene protein_coding_gene FALSE TRUE AT1G34200.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G09670.1); similar to AX110P [Daucus carota] (GB:BAA03455.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) 0.431065476812261 4.08473206844559 0.00184625543499980 1 4.28631728887673 12.753875650801 0.431065476812261 0.111505738453186
AT4G13250_at 10.6326517678966 10.7824360875198 10.9392899578831 10.9290681519212 10.6968186405809 10.5497082342635 9.92138912830064 9.97095793019544 8.81948373523679 9.2022128014884 9.32251764554054 9.0398290147115 9.01641100706813 8.82244698590891 9.18952032717682 8.94471867838345 9.5739748028065 10.1007508138505 9.02660755194522 0.121174361622402 0.117802411837602 0.122046875328348 0.117676363172750 0.118701402069443 0.123803074854650 0.122174991838821 0.121246802906221 0.131526945975100 0.116087905703245 0.119257909680919 0.118912103229393 0.115781046905287 0.121334816835725 0.121572953883476 0.123187486216315 0.125124390509390 0.116292924515419 0.118911234345882 4 4|0 -|/ 7684424 7685186 7684802 7684231 7686872 - gene protein_coding_gene FALSE TRUE AT4G13250.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04900.1); similar to Os01g0227100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042468.1); similar to unknown [Xerophyta humilis] (GB:AAT45005.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.343516157112364 4.08267275569661 0.00185268624460077 1 4.28329024995688 19.6864762484806 0.343516157112364 0.0373727425160639
AT1G01480_at 2.03494212992931 2.09284836551836 3.32778024096866 3.28629241928842 1.87094493331536 2.21334663098344 1.4889444758511 1.78421896151393 1.44002413777974 1.91447372103127 1.7315399147333 1.41041391680039 1.62211303415046 1.70151545457126 1.93680335797957 1.57214672272713 1.3561251225501 2.01991149882543 1.81981905784252 0.234674997380541 0.23529456831239 0.245180374557962 0.240557376219513 0.227710043722108 0.233623516573182 0.228399532092104 0.238968598804474 0.234480111849822 0.232252422797843 0.235334294429799 0.236944602255020 0.244326298929222 0.227710043722108 0.230587780277768 0.227710043722108 0.239233212589717 0.229889779287723 0.23485499384319 1 1 + 177480 178012 177754.364 175782 178400 + gene protein_coding_gene FALSE TRUE AT1G01480.1|AT1G01480.2 ACS2 (1-Amino-cyclopropane-1-carboxylate synthase 2) a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family, isolated from a flower-specific cDNA library. Identical to 1-aminocyclopropane-1-carboxylate synthase 2 (EC 4.4.1.14) (ACC synthase 2) (S-adenosyl-L-methionine methylthioadenosine-lyase 2) (ACS2) [Arabidopsis Thaliana] (GB:Q06402;GB:Q941E7); similar to ACS1 (ACC SYNTHASE 1), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G61510.1); similar to 1-aminocyclopropane-1-carboxylate synthase (GB:AAA97516.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki] (GB:BAB89349.1); similar to ACC synthase [Brassica oleracea var. italica] (GB:AAL37504.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839)|Identical to 1-aminocyclopropane-1-carboxylate synthase 2 (EC 4.4.1.14) (ACC synthase 2) (S-adenosyl-L-methionine methylthioadenosine-lyase 2) (ACS2) [Arabidopsis Thaliana] (GB:Q06402;GB:Q941E7); similar to ACS1 (ACC SYNTHASE 1), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G61510.1); similar to 1-aminocyclopropane-1-carboxylate synthase (GB:AAA97516.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.384200697588414 4.07882343210576 0.00186476959896796 1 4.27763034853556 3.95921148634276 0.384200697588414 0.079209204027887
AT1G08230_at 3.90521595660495 4.27401245165924 3.25526453914185 2.97246739196376 4.58582523781787 3.21171951319842 4.74322078543425 4.72071932215615 2.35386368636990 3.71988034170386 2.10389568803896 2.33781016294202 2.99910669509965 2.61789880916481 2.19181109981267 3.02666497697672 2.70343233439567 2.19882670449835 2.99874458072759 0.280049139364269 0.277803558304474 0.278498674845855 0.278563664887979 0.288396824202054 0.288570577838 0.278948266463813 0.275765103021699 0.282416394104362 0.285231383121239 0.281035505673741 0.284253502551095 0.276162999562209 0.278052092090402 0.282525926147377 0.276016168073719 0.281453487368055 0.288586538710371 0.276785713031119 1 1|0 -|/ 2583800 2584344 2584026.1 2583712 2586706 - gene protein_coding_gene FALSE TRUE AT1G08230.2 similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G41800.1); similar to Os05g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056462.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE81500.1); similar to Os01g0857400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044853.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.70310250958376 -4.07730763997353 0.0018695503225947 1 4.27540098527774 6.73185248898033 -0.70310250958376 0.251058002429566
AT4G24220_at 9.88642834642477 10.1442844803567 10.0449321002087 10.1776487193519 10.3525250431697 10.1592370647446 9.5512436583853 9.7448011478988 9.6568735114016 9.43835519110497 10.0553797124575 9.48227002595175 9.85808486118723 10.035768374203 9.604442414882 9.82159215674348 9.6324289937416 9.80946738428926 9.09201062974643 0.121164630018445 0.119344163425182 0.122454058155789 0.122310004709064 0.117010363339178 0.122110031308145 0.119637444668432 0.121078761773544 0.141008867505007 0.117417460503542 0.118968172996147 0.119922015238038 0.125077150071681 0.12490149477706 0.122536021283592 0.124247400807240 0.129797610680096 0.131646428871552 0.118823950529271 4 4 + 12565893 12566404 12566040.727 12564955 12566765 + gene protein_coding_gene FALSE TRUE AT4G24220.1|AT4G24220.2 VEP1 (VEIN PATTERNING 1) encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding. similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G58750.1); similar to progesterone 5beta-reductase [Isoplexis sceptrum] (GB:ABB36654.1); similar to progesterone 5-beta-reductase [Di (GB:ABA77554.1); similar to progesterone 5-beta-reductase [Di (GB:ABA77558.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720)|similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G58750.1); similar to progesterone 5-beta-reductase [Di (GB:ABA77554.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720) 0.371789559974975 4.07705279177598 0.00187035535355300 1 4.27502613205648 19.5992254123257 0.371789559974975 0.0689896327180239
AT1G34420_at 4.30116474865981 4.22836089403249 4.60760223766709 4.80449691274871 3.86157615031932 3.46736021746878 1.99280476224294 2.10453379663937 3.03137976486984 2.29604764456666 1.67865516397298 2.09288143885368 1.87198469318691 2.76406025846795 2.0353340566167 2.14860042255895 1.88198606121336 2.48899484520219 1.81297414890500 0.3242486633079 0.329683291490501 0.334752749373755 0.326943666882384 0.334915257535853 0.340026563621725 0.319239623504285 0.339044647715461 0.326242716537345 0.322960370341360 0.32165976019613 0.311512669911329 0.320910952029778 0.312397982009155 0.317848648462375 0.311729706556995 0.322910296694789 0.311512669911329 0.311971443886398 1 1 + 12586946 12587515 12587210.636 12584565 12587548 + gene protein_coding_gene FALSE TRUE AT1G34420.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G41820.1); similar to Os07g0207100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059157.1); similar to Os12g0182300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066320.1); similar to putative LRR receptor-like kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAC83241.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.384360546942959 4.07431410024394 0.00187902935457354 1 4.27099721967918 5.92121045011711 0.384360546942959 0.079672362473853
AT1G22430_at 7.9411155848359 7.8910885655974 6.6711295855289 6.55790211130635 8.44044916474202 7.96120799867816 8.18328127425475 7.89536886220043 7.38191596246754 8.25215765539951 7.96881744908852 8.67742823024619 7.99271262055333 7.66958187366046 8.53016239402236 8.10013382553443 7.37562834086698 7.2512525337439 8.95848497931877 0.182822663036559 0.181136548654818 0.186841615924008 0.178251414266479 0.187912001622580 0.187426872836457 0.184987896847646 0.181485735977311 0.188692044330995 0.181612790413951 0.187046354625131 0.179411049713772 0.180945427193071 0.188715299091904 0.185704820334999 0.185241258384015 0.192657028513065 0.189774325856539 0.178251414266479 1 1|0 +|/ 7920205 7921553 7921051.4 7919133 7921821 + gene protein_coding_gene FALSE TRUE AT1G22430.1|AT1G22430.2 alcohol dehydrogenase, putative|oxidoreductase/ zinc ion binding similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G22440.1); similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT4G22110.2); similar to alcohol dehydrogenase ADH [Lycopersicon esculentum] (GB:AAB33480.2); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.410923115294507 -4.07356770592327 0.00188140060425858 1 4.26989900138422 15.7643099888229 -0.410923115294507 0.0990938289332145
AT2G19340_at 5.81891674830067 6.69712200868822 6.36090714566483 6.55896611787347 6.94526986841085 7.01293232824193 6.19195802168812 6.16025594510007 4.89330351002755 5.32965640835357 5.58840749803643 5.91756396448502 5.96765408590078 5.69497731291228 5.54743264220897 5.81772639375701 5.71620599429638 5.62475249169697 5.43960904943101 0.240424968290491 0.238895751378878 0.236231188224017 0.239519072738694 0.239871971760071 0.239417948004297 0.243999520307201 0.242557806370425 0.248256481821563 0.23704058290744 0.234991720635714 0.234991720635714 0.234991720635714 0.243498529700161 0.256615051921268 0.236332694887051 0.259015366129972 0.243308145483618 0.247581335166027 2 2 - 8382379 8382851 8382681.091 8380848 8383021 - gene protein_coding_gene FALSE TRUE AT2G19340.1|AT2G19340.2 membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29870.1); similar to Os02g0315400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046663.1); similar to hypothetical protein DDBDRAFT_0204707 [Dictyostelium discoideum AX4] (GB:XP_641827.1); contains domain SUBFAMILY NOT NAMED (PTHR13160:SF2); contains domain FAMILY NOT NAMED (PTHR13160) 0.507969704705592 4.07352683457039 0.00188153054013475 1 4.2698388623515 11.9458892082539 0.507969704705592 0.156330256544385
AT1G11000_at 3.03055089208456 3.01354709285309 2.27108984007135 2.39066829402250 2.12792367473239 2.58286246844884 2.72730837958794 2.75057355190811 3.40879940389834 3.19337986644955 3.43564948762742 3.99727421698048 3.07915119732423 3.625945703087 3.56999397943753 3.14986433688654 2.74053023616504 3.26386567905559 4.17894487593992 0.189129579671698 0.195095548731543 0.192516788553988 0.189215463476974 0.193073509240851 0.190642354470347 0.199288589646753 0.191767745752743 0.197364660139999 0.193549151921753 0.192728510593245 0.193709431587230 0.188038177722345 0.194600626201214 0.189870696045498 0.191969746248703 0.192094199259443 0.201437219802978 0.190938240065256 1 0|1 /|- 3672055 3672536 3672253.6 3671756 3675979 - gene protein_coding_gene FALSE TRUE AT1G11000.1 MLO4 (MILDEW RESISTANCE LOCUS O 4); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO4 belongs to the clade I, with AtMLO11 and AtMLO14. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of root, cotyledons and young leaves, it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 4 (AtMlo4) (MLO4) [Arabidopsis Thaliana] (GB:O23693;GB:Q94KB8); similar to MLO11 (MILDEW RESISTANCE LOCUS O 11), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G53760.2); similar to MLO14 (MILDEW RESISTANCE LOCUS O 14), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G26700.1); similar to seven transmembrane protein Mlo4 [Zea mays] (GB:AAK38340.1); similar to Mlo-related protein [Medicago truncatula] (GB:ABE87732.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) -0.386641301990892 -4.07302204015473 0.00188313612530782 1 4.26909607619589 6.08756172588014 -0.386641301990892 0.0815560767945349
AT2G28050_at 2.49664989128541 2.39215631621582 2.61321059780976 2.39611591550552 2.14763584115594 2.13974976180984 2.85995696422749 3.13020124350313 3.22094655380813 2.95249872454272 2.65559040987630 2.95449975332449 2.5810965739254 2.68274956154757 2.66422354751259 2.58076865021500 2.59945872453331 2.99892921864179 2.97086909882682 0.178905745721461 0.179090124376414 0.179414452325676 0.175314257815069 0.175314257815069 0.177462570551254 0.189233733094873 0.181224063725767 0.179792531138250 0.182174251981216 0.175314257815069 0.180674942575277 0.179778534434800 0.178651914280642 0.175314257815069 0.182702436874170 0.199837744747488 0.177426656501657 0.175314257815069 2 2 - 11945348 11945878 11945565.364 11945342 11946730 - gene protein_coding_gene FALSE TRUE AT2G28050.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G32630.1); similar to Os07g0671200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060597.1); similar to Os06g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057887.1); similar to putative fertility restorer homologue [Oryza sativa (japonica cultivar-group)] (GB:BAD54485.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.364501656091601 -4.07274174290088 0.00188402827546491 1 4.26868361307363 5.40334424010892 -0.364501656091601 0.0626694877746752
AT2G42910_at 7.37776103342602 7.94229447224893 7.16395012993687 7.56356154208541 7.76366642291022 7.13734164624223 8.61247571319465 8.7027614184769 7.79710337881754 8.0134344778485 7.41359022120947 7.89474029865714 7.36011155399555 7.68370441317815 7.85448142415592 7.57305082105904 7.42174883825060 7.69966458271093 7.8864508408243 0.167151171304419 0.166855521892052 0.169629163132377 0.177779014225975 0.176606596373335 0.171034388335606 0.171167730252221 0.168231238066126 0.174816932493904 0.167911848865372 0.167330100228065 0.165790575389207 0.166607828801134 0.163832247953044 0.168723271991409 0.171600631266226 0.184986274159057 0.175236996157579 0.166292595358123 2 2|0 +|/ 17864273 17865436 17864880.8 17863345 17865674 + gene protein_coding_gene FALSE TRUE AT2G42910.1 ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) Identical to Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4) (PRS4) [Arabidopsis Thaliana] (GB:Q680A5;GB:Q9S7B9); similar to ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) [Arabidopsis thaliana] (TAIR:AT1G10700.1); similar to Ribose-phosphate pyrophosphokinase 4 (Phosphoribosyl pyrophosphate synthetase 4) (GB:Q9XGA1); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) -0.519026468693809 -4.07268787660701 0.00188419977542862 1 4.26860434640201 15.5387929231396 -0.519026468693809 0.162230926790651
AT1G15060_at 6.74591022327667 6.53311486083296 7.0682425648889 7.12184537752649 7.439507501949 7.3737280317639 7.73400122127671 7.89046353859247 7.19754232636612 6.55089345064641 6.92686713114088 7.3153557100104 7.75017811950724 7.70098123784335 7.27825593557324 7.76101033045256 7.77122760543065 7.39616117723236 6.68536356851083 0.203265999484752 0.189702570679858 0.191655607389003 0.187454817854568 0.190101834579921 0.197373752393125 0.187175267387648 0.184897088104475 0.203382806869876 0.192781369183666 0.182240658472539 0.183829087726319 0.18651138266176 0.181404631813649 0.183462445812936 0.184636303396157 0.192230078385337 0.194855256890763 0.184697649530082 1 0|1 /|- 5184612 5185453 5185085.857 5183602 5186969 - gene protein_coding_gene FALSE TRUE AT1G15060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73750.1); similar to Os01g0692600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043943.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82496.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.350598307714208 4.07194159489665 0.00188657746882352 1 4.2675061154771 14.3877372172167 0.350598307714208 0.0480090328207515
AT1G64360_at 10.6733189167822 10.3019378643375 11.8572134212553 11.7972181986480 11.9348358366978 11.2092242596002 10.8963368591393 10.5659394144703 7.82441649587386 8.97909045383762 7.90427349246253 7.73338470493846 9.6715259598032 7.92813689087726 6.47988612304674 9.68844061323601 10.0302270956688 8.14213162378214 8.80520781504881 0.160700703802729 0.154957624139647 0.164987969279254 0.161816142560031 0.162208283816533 0.157712044542660 0.160947421360804 0.156782090293067 0.158221186658814 0.160999305810489 0.173355102254535 0.160617036617436 0.156251829575573 0.165238273299137 0.169497841546284 0.154957624139647 0.162056198585090 0.171321887910338 0.166133011702549 1 1 + 23891629 23891812 23891722.818 23891533 23892196 + gene protein_coding_gene FALSE TRUE AT1G64360.1 unknown protein 0.500626111712391 4.07102408157277 0.00188950500269941 1 4.26615578738471 19.6462476303148 0.500626111712391 0.152562968290920
AT1G07705_at 5.37972556139653 5.64387052585597 6.06494852281592 5.64775340496886 6.1191322299468 5.68120641564 5.48522599441245 5.290027298058 3.91583444036833 3.97170883751117 4.00077027019 4.5065057420932 4.3835362085216 4.5578812596687 4.31592614876999 4.34962561840264 4.95622167648182 4.18381971373358 3.96751669060192 0.221226225753540 0.218456190273355 0.221418830781905 0.220764097004924 0.216980317054975 0.226971275220989 0.222065528726192 0.221308239384148 0.230888896226869 0.218061655063382 0.217248307938456 0.217704422816566 0.216846589248267 0.221464732122717 0.224406200330256 0.217401306974647 0.226340671606700 0.227612609377806 0.220192261631216 1 1|0 +|/ 2384414 2384950 2384740.333 2381612 2386089 + gene protein_coding_gene FALSE TRUE AT1G07705.1|AT1G07705.2 transcription regulator| similar to VIP2 (VIRE2 INTERACTING PROTEIN2), transcription regulator [Arabidopsis thaliana] (TAIR:AT5G59710.1); similar to NOT2/NOT3/NOT5 [Medicago truncatula] (GB:ABE93791.1); similar to VIP2 [Nicotiana benthamiana] (GB:AAY15746.1); contains InterPro domain NOT2/NOT3/NOT5; (InterPro:IPR007282)|similar to VIP2 (VIRE2 INTERACTING PROTEIN2), transcription regulator [Arabidopsis thaliana] (TAIR:AT5G59710.1); similar to NOT2/NOT3/NOT5 [Medicago truncatula] (GB:ABE93791.1); similar to NOT2/NOT3/NOT5 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98742.1); similar to VIP2 [Nicotiana benthamiana] (GB:AAY15746.1); contains InterPro domain NOT2/NOT3/NOT5; (InterPro:IPR007282) 0.44182348599219 4.07056203727284 0.00189098105211202 1 4.26547573804734 9.8432224870834 0.44182348599219 0.119107112188197
AT2G02060_at 1.62721628329061 1.98403487352353 1.83721960767213 1.96161924826989 1.36042086280735 1.33912869953745 1.72410128748222 2.25888960408598 2.14276979119004 2.47429401524513 1.67041208543796 1.6642973097351 1.78134363794903 1.78351186350009 1.68270171517842 1.96176704482986 1.84427072633546 1.78132086968815 2.46942334441519 0.177542813517546 0.172020577091739 0.179175007791315 0.175066092994328 0.172899837022118 0.176421551459924 0.174745964909235 0.172020577091739 0.179412637962669 0.175102175051439 0.175913923995624 0.185858583278878 0.183604903275577 0.175578719740535 0.173077727503718 0.173811007660644 0.172020577091739 0.193580889040156 0.178439206756970 2 2|0 +|/ 498990 499532 499219 495690 499558 + gene protein_coding_gene FALSE TRUE AT2G02060.1 calcium-dependent protein kinase-related / CDPK-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14590.1); similar to Os02g0686300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047769.1); similar to H0307D04.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66858.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.432461317279453 -4.06974436210911 0.00189359614849961 1 4.26427218477037 3.82826157843292 -0.432461317279453 0.113380085127559
AT1G72710_at 10.4738831049773 10.414696979721 10.6671034536098 10.4656110260040 10.9541283888396 10.7847126481013 10.1569428367870 9.86764665109263 9.50999306382205 9.61401347239044 9.61041567310902 9.63662046239654 9.94821412871275 9.73710799037162 9.62070926487769 9.85954942106173 10.1826780555897 9.76694838716764 9.5079896660704 0.0878693656270121 0.0888235415469471 0.0894034349756674 0.09541808799438 0.0908036845421712 0.0916015289620749 0.0878693656270121 0.0890620173351621 0.099273059150645 0.0934840417176946 0.0900955481435971 0.0881365178150587 0.0930354339208267 0.0919504092808321 0.0910617232547297 0.0878693656270121 0.0929883679576139 0.0924019343374343 0.0978011260358845 1 1|0 +|/ 27378782 27379752 27379422.5 27375933 27380246 + gene protein_coding_gene FALSE TRUE AT1G72710.1 casein kinase, putative Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. similar to CK1 (casein kinase 1-like protein 1), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G26100.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81302.1); similar to casein kinase I-like protein [Brassica oleracea] (GB:AAF19807.1); similar to casein kinase I-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.370439087405375 4.06879906276392 0.00189662411286654 1 4.26288065652523 20.1427302146441 0.370439087405375 0.0684597277228019
AT3G25410_at 7.58497882037094 7.65393841452809 7.32429048934226 7.26094909163798 7.42121840691123 7.92515944952253 8.24648460899493 8.49543475314002 7.82318601098986 8.21555531940712 7.46751731653014 7.78385698898714 7.73687946230385 7.83334347585107 7.98297823798515 7.99392864408082 8.04115624409611 7.06290159340236 8.09567201936935 0.142916029956970 0.143262924709741 0.151431479976176 0.164960723499586 0.145775165223847 0.148867721213817 0.147219608633130 0.149810444487875 0.154479174247580 0.153686133689107 0.15212365672595 0.145523474999899 0.14471476725226 0.154327026942945 0.147714573098209 0.145876843429826 0.150661687622344 0.156548279419275 0.146645818433714 3 3 - 9215802 9216475 9216091.091 9215576 9217727 - gene protein_coding_gene FALSE TRUE AT3G25410.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G12030.2); similar to Os02g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046843.1); similar to Os09g0520600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063701.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) -0.409644497211264 -4.06791490113078 0.00189946081037232 1 4.26157900746268 15.6303691019693 -0.409644497211264 0.0986108398468538
AT1G12780_at 10.2203480833941 10.0721128399913 10.4591355512972 10.6023823490669 11.1039812166702 10.8666914308367 9.71375090398095 9.42515519000074 9.75123173899645 9.56308017638896 9.3423039567687 8.77778311995596 9.31751363631157 9.51877588068326 8.86854117235792 9.6730912497175 10.0422014650336 9.51580241126434 9.27431397263574 0.110040016549104 0.110068161515320 0.113599895595259 0.1129748916657 0.11048670691322 0.112250840623343 0.112304384193657 0.110913565452946 0.118845666055000 0.114497161468677 0.117646300310767 0.116352305040443 0.116420744806978 0.110790524394346 0.128300093103427 0.109988093366616 0.115631431068086 0.113150586603914 0.121849272463683 1 1 - 4356332 4356854 4356635.273 4355924 4358326 - gene protein_coding_gene FALSE TRUE AT1G12780.1 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Identical to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase) [Arabidopsis Thaliana] (GB:Q42605;GB:Q9LPX1); similar to UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT1G63180.1); similar to UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) (GB:Q43070); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) 0.37633276573194 4.06502740285475 0.00190875575267841 1 4.25732727921447 19.7637164827474 0.37633276573194 0.0738453391886495
AT2G02390_at 9.37408170747484 9.32165105203791 10.1542170321289 10.1045588303652 9.20481939034189 8.74359328780847 8.3431458904347 8.15174938735265 8.11802976656688 7.58297228014491 7.37961701756126 7.31355648348024 7.88798028345438 8.15745702266356 7.21715758489776 7.8091062527977 7.99298827587403 8.19378147419484 7.4332343670698 0.188941116526854 0.188711702194628 0.186020057407355 0.194149908322797 0.185783933787065 0.198776121090923 0.187519602122690 0.188253054773196 0.19757872975565 0.193852966802358 0.185134103375569 0.183377249484976 0.188806543581789 0.183377249484976 0.190137124736690 0.188610586075259 0.188859761925411 0.183377249484976 0.189756505098301 2 0|2 /|+ 629557 630920 630182.625 628908 631113 + gene protein_coding_gene FALSE TRUE AT2G02390.1|AT2G02390.2|AT2G02390.3 ATGSTZ1 (GLUTATHIONE S-TRANSFERASE 18); glutathione transferase Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide. Identical to Glutathione S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1) (Maleylacetone isomerase) (EC 5.2.1.-) (MAI) (GST18) [Arabidopsis Thaliana] (GB:Q9ZVQ3); similar to ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02380.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60042.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)|Identical to Glutathione S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1) (Maleylacetone isomerase) (EC 5.2.1.-) (MAI) (GST18) [Arabidopsis Thaliana] (GB:Q9ZVQ3); similar to ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02380.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60042.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987)|similar to ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02380.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60042.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.393341768637185 4.06376786160537 0.00191282509222202 1 4.25547227155165 16.9024109158894 0.393341768637185 0.0873158191230387
AT3G28100_at 5.05098803705484 5.29299729833933 6.37772750395032 6.13161704594413 7.32855619192938 6.47115109361464 5.82372908658769 5.95677536156295 3.41794514290645 4.30025532304056 3.94792007457075 3.23758398981783 4.59352886817493 3.73948920058619 3.51909558687897 4.58621352865275 4.60293484751889 3.35955710724927 4.16581207167677 0.280846172294504 0.28735648183373 0.282129618887917 0.294771074629418 0.289670337226102 0.294735544944325 0.279250777444769 0.288503292379607 0.306490444300133 0.277616145316906 0.297057596020245 0.286848894154573 0.291557520802375 0.279863531587315 0.278301737761340 0.280046674851956 0.288012242380753 0.297176967287230 0.277616145316906 3 3|0 +|/ 10457389 10457927 10457610.571 10457336 10462202 + gene protein_coding_gene FALSE TRUE AT3G28100.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28070.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.516546700431678 4.0626559608129 0.00191642494810384 1 4.25383451060564 10.0090066588591 0.516546700431678 0.161598557556495
AT4G26110_at 5.97800616132805 6.42917674189574 5.91203083892406 5.77765745547252 6.58457964079122 5.79231775978411 6.14822596541411 6.59687132001229 6.84123756422145 6.94941121040096 6.07793904254045 6.0245373153236 5.96964809875307 6.23816389363634 5.88257325084128 6.09750062995859 5.79739043873118 5.99343456413046 6.70607271050522 0.201898372083622 0.184527863983116 0.199517934343081 0.187635627889540 0.189846774008388 0.192363466546201 0.191286789917011 0.192714894278990 0.193901020312635 0.187151764452761 0.187461829866535 0.186966802453600 0.189239187189443 0.191228623463871 0.192579812533337 0.184527863983116 0.194131549434314 0.190275333261988 0.189485941387125 4 4|0 +|/ 13234051 13235486 13234722.889 13232604 13235888 + gene protein_coding_gene FALSE TRUE AT4G26110.1 NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding similar to NAP1,3 (NUCLEOSOME ASSEMBLY PROTEIN1,3), DNA binding [Arabidopsis thaliana] (TAIR:AT5G56950.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession Number JS0707 (GB:AAA50234.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.54675785711137 -4.0604338130438 0.00192364047867455 1 4.25056088303416 12.5735526850937 -0.54675785711137 0.177376610387104
AT3G20940_at 1.81832034782947 1.73642885286884 1.48936417269415 1.38348474631354 1.02175649062758 1.63280125097679 1.46792826588138 1.58381046690871 2.69578562329784 1.75464527150036 1.65525440550112 1.83528095027929 2.02360537089746 1.77526777337019 1.39519853581347 1.71356967647928 1.56922711487107 1.4669699841581 2.33556206364144 0.195763189575858 0.198159165360483 0.200222946020343 0.195763189575858 0.195763189575858 0.202563395839213 0.202120888129593 0.198167312532731 0.208049761559620 0.198382921708102 0.205383385894784 0.195763189575858 0.198904253594649 0.200620008724999 0.195763189575858 0.207220978257716 0.214076696320792 0.208597404309677 0.20414574109719 3 3 + 7341272 7341474 7341353.857 7339723 7341661 + gene protein_coding_gene FALSE TRUE AT3G20940.1 CYP705A30 (cytochrome P450, family 705, subfamily A, polypeptide 30); oxygen binding a member of A-type cytochrome P450 similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A32 (cytochrome P450, family 705, subfamily A, polypeptide 32), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20950.1); similar to CYP705A5 (cytochrome P450, family 705, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G47990.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94648.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.426235622305525 -4.05999106316088 0.00192508151037643 1 4.24990854576978 3.48738401387979 -0.426235622305525 0.110093380294835
AT1G79820_at 2.84261659312876 3.32933307599787 2.44339534107861 2.66737860433215 2.48871118809903 2.47893719338429 3.43286922007149 3.14669814115367 3.81676783922888 3.74069366879902 3.42533797147094 3.52169320612294 3.25622245639511 3.48778071859265 3.54445617341403 3.44617699555739 3.2903609571928 3.64504541553351 3.30551712665463 0.232931186365841 0.221056623771386 0.238522294818585 0.223241273190150 0.222058798112354 0.244436566720924 0.221056623771386 0.233320813281570 0.23643872014957 0.228458360951201 0.221094374441052 0.221239224204421 0.237638122401661 0.228098500726839 0.225295859886637 0.222551007153297 0.251355908450088 0.225537849482744 0.221056623771386 1 1|0 -|/ 30027481 30028536 30027897.333 30027244 30032336 - gene protein_coding_gene FALSE TRUE AT1G79820.1|AT1G79820.2|AT1G79820.3 SGB1; carbohydrate transporter/ sugar porter Identical to Probable plastidic glucose transporter 3 [Arabidopsis Thaliana] (GB:Q2V4B9;GB:Q7X7U4;GB:Q8RXX6;GB:Q9CA87;GB:Q9M9Z8); similar to hexose transporter, putative [Arabidopsis thaliana] (TAIR:AT1G67300.1); similar to sugar transporter [Citrus unshiu] (GB:AAN86062.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.418566158653507 -4.0599199826498 0.00192531296309859 1 4.24980381474898 6.39030597716195 -0.418566158653507 0.105129939742274
AT2G06005_at 3.42920439687342 3.05636397147385 2.76390406532938 2.72050237073901 2.92019211890053 2.64717093743948 3.49238078905512 3.05378490148347 3.24502750185132 2.92061155019265 3.02313217314539 2.52092351100601 2.72976788103496 2.40142071713348 2.79196112270372 2.57044853059604 3.09148665930866 2.73724845001425 3.11004229126706 0.238060163041438 0.241256564004914 0.247748132127047 0.239197350789434 0.240680482220208 0.245959911704271 0.235386751643289 0.244239580574984 0.240825312351089 0.234845299384384 0.234257788230724 0.242245802615369 0.240713509807240 0.236996655862576 0.240351599983999 0.236939724013633 0.237955365689464 0.238682060379524 0.237622634872779 2 2|0 +|/ 2334893 2335647 2335226.778 2332544 2336153 + gene protein_coding_gene FALSE TRUE AT2G06005.1|AT2G06005.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20580.2); similar to Os02g0778300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048294.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16977.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.426793146052615 -4.0590634860513 0.00192810417299878 1 4.24854178264893 5.92303414977253 -0.426793146052615 0.110511441153377
AT2G14390_at 0.695765937096656 0.983315882937504 1.26072433329712 1.09417108413510 1.11707722151127 1.23685466754956 1.11683346040602 0.857569576487259 0.443455720155536 0.863359217394851 1.28742697336976 1.18267695861867 0.94628164719688 0.90332639678556 1.31790490060210 1.39512425056851 1.13268117757971 1.53216855724326 0.852601243605429 0.211178181993091 0.206762423828444 0.210176021569172 0.21164123011151 0.208189609425760 0.210978014570798 0.206762423828444 0.207510552645217 0.216306476895083 0.209677533100657 0.213635562491464 0.224979722078549 0.214244153797577 0.212467566264066 0.215963286700218 0.211415610548514 0.214065998476828 0.206762423828444 0.21153685424683 2 2 + 6118289 6118958 6118584.545 6117994 6119000 + gene protein_coding_gene FALSE TRUE AT2G14390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06140.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.378114538209178 4.058544215456 0.00192979846083887 1 4.24777659475307 2.01129114615964 0.378114538209178 0.0758266521862498
AT4G24790_at 2.19614427248546 2.15424994496323 1.40515836638407 2.25385039490609 2.11768214109787 1.80990663775432 3.52889491769462 3.31114180386448 2.96242432917581 3.35220181793143 2.79111168014066 3.20763010252816 3.25673880699245 3.00274124332704 3.37544104957488 3.35262863603738 2.66996903738509 3.59110773520057 3.53815863684161 0.230519192169885 0.232503298748091 0.232175728282120 0.237712480738223 0.227679596781172 0.231809007166478 0.231909666541712 0.230879702626296 0.229232083630331 0.234696274167156 0.227679596781172 0.227679596781172 0.230466906847096 0.22796285252144 0.236501368379066 0.227679596781172 0.230706226450633 0.238330226248020 0.233374744377096 4 4 + 12780628 12781011 12780848.636 12778232 12781041 + gene protein_coding_gene FALSE TRUE AT4G24790.1 ATP binding / DNA-directed DNA polymerase similar to DNA polymerase-related [Arabidopsis thaliana] (TAIR:AT1G14460.1); similar to hypothetical protein LOC_Os11g13990 [Oryza sativa (japonica cultivar-group)] (GB:AAX95843.1); similar to Os08g0120200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060877.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain DNA polymerase III, subunits gamma and tau; (InterPro:IPR012763); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.514649453983848 -4.05853898221276 0.00192981554387860 1 4.24776888293874 5.56721987541771 -0.514649453983848 0.160873413125586
AT2G22870_at 6.13246690825413 7.03180919722941 6.04950113545672 6.36891919590186 6.10193741353221 5.35096016683412 7.52771335936904 7.07631964163325 4.20428622247323 4.78097510711079 3.76781984896291 4.64395957159675 4.26904340569482 4.2976571234707 4.84444121994347 5.11807118085327 4.31732505459319 3.84070004873453 5.10787123238635 0.269902864053736 0.271798040522479 0.272526635992067 0.271419346275003 0.267689034134890 0.275387042160035 0.271428470579049 0.276759269258994 0.273475149470216 0.267689034134890 0.267689034134890 0.267689034134890 0.267689034134890 0.268771196022666 0.267689034134890 0.267689034134890 0.288396097735681 0.268676332492875 0.274126838288217 2 2|0 +|/ 9746880 9747959 9747369.8 9746537 9748184 + gene protein_coding_gene FALSE TRUE AT2G22870.1 EMB2001 (EMBRYO DEFECTIVE 2001); GTP binding Identical to GTP-binding protein At2g22870 [Arabidopsis Thaliana] (GB:O81004;GB:Q5XVD7); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT5G11480.1); similar to Putative nucleotide binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19136.1); similar to Os03g0232500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049468.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP-binding; (InterPro:IPR005289) -0.642290735474575 -4.05849942465525 0.00192994467795006 1 4.24771058998321 10.997497395137 -0.642290735474575 0.224208834599548
AT1G62750_at 11.8761082557297 11.8454735086300 11.9100142408301 11.8106497434815 11.7295592504826 11.6224369203056 12.7990980179017 12.8450590494847 12.3569139144855 12.6496030732200 12.3444249059844 12.4342101491576 12.3661997161186 12.3608458702682 12.4523782492001 12.5804120336355 12.2910871598140 12.2626389608756 12.4461930210659 0.073531609003872 0.0726544609831373 0.0729250328299678 0.0750550713936308 0.072542986666674 0.073197704025562 0.074536276999513 0.0721040072878042 0.0761738358464981 0.0722690728976964 0.0719579192939111 0.0719579192939111 0.0721824223837135 0.0748176609211408 0.0738926514822725 0.0720154516864423 0.0767128466943789 0.0743916691255522 0.0738834185015176 1 1|0 -|/ 23237302 23237920 23237628.7 23237099 23240112 - gene protein_coding_gene FALSE TRUE AT1G62750.1 ATSCO1/ATSCO1/CPEF-G (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. similar to mitochondrial elongation factor, putative [Arabidopsis thaliana] (TAIR:AT2G45030.1); similar to Elongation factor G, chloroplast precursor (EF-G) (GB:P34811); similar to translation elongation factor EF-G, chloroplast - soybean (GB:S35701); similar to Elongation factor Tu, domain 2 [Medicago truncatula] (GB:ABE81469.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation elongation factor G; (InterPro:IPR004540); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, domain IV; (InterPro:IPR005517); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.335490854060137 -4.05808001364247 0.00193131438254632 1 4.24709252191313 24.4901805234669 -0.335490854060137 0.0270316708909551
AT2G31320_at 3.9809077538424 4.088357663953 3.39405025848389 3.31866185418671 2.93565888578847 3.60355407471837 3.59186066829152 3.83146808457807 4.28967823753034 4.18683900392043 4.35189842774705 3.90553811798422 3.99241229295481 3.96283194723573 4.26733335388848 3.82222221512732 3.76464095788621 4.03136090893924 4.57845935497671 0.184094737154706 0.178595219011872 0.177759896550432 0.17678366349817 0.176618349384113 0.183866456828645 0.176149350065321 0.186612842382375 0.189614335680218 0.173906256444223 0.176739207767005 0.186491440125318 0.177072318738583 0.175813562367561 0.178890470302313 0.176047919831426 0.178892094828446 0.177831077831283 0.173906256444223 2 2|0 -|/ 13361474 13362381 13361831.875 13360898 13366805 - gene protein_coding_gene FALSE TRUE AT2G31320.1 poly (ADP-ribose) polymerase, putative / NAD(+) ADP-ribosyltransferase, putative / poly(ADP-ribose) synthetase, putative Identical to Poly [ADP-ribose] polymerase 1 (EC 2.4.2.30) (PARP-1) (ADPRT 1) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) (PARP1) [Arabidopsis Thaliana] (GB:Q9ZP54;GB:Q9SJW4); similar to NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G22470.1); similar to Poly [ADP-ribose] polymerase 1 (PARP-1) (ADPRT 1) (NAD(+) ADP-ribosyltransferase 1) (Poly[ADP-ribose] synthetase 1) (GB:Q9ZSV1); similar to poly(ADP-ribose) synthetase (GB:AAB59447.1); similar to poly(ADP-ribose) polymerase [Zea mays] (GB:CAA10889.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain Zinc finger, PARP-type; (InterPro:IPR001510); contains InterPro domain NAD+ ADP-ribosyltransferase; (InterPro:IPR008288); contains InterPro domain Poly(ADP-ribose) polymerase, regulatory region; (InterPro:IPR004102); contains InterPro domain PADR1; (InterPro:IPR012982); contains InterPro domain WGR; (InterPro:IPR008893); contains InterPro domain PARP, catalytic; (InterPro:IPR012317); contains InterPro domain Poly(ADP-ribose) polymerase, catalytic region; (InterPro:IPR001290) -0.449773181063665 -4.05566338401293 0.00193922632669492 1 4.24353073824833 7.77503422707841 -0.449773181063665 0.124878407613620
AT2G28130_at 2.7538240559561 2.62945568646220 3.13331399694809 2.77185078308627 2.8614439830199 2.90562708384409 2.90570183467314 1.99377744468440 2.22049918587481 2.34209922029280 3.63682234876253 2.95956280588466 2.96879953315335 2.80951918480757 3.27184964219529 2.53329315718809 2.64798767184029 3.16300860707117 2.27082848752828 0.234126292696617 0.239169982951581 0.23540742739542 0.233567167455931 0.238490117090996 0.233876163149954 0.233596904870180 0.233567167455931 0.234084547227992 0.235240754934178 0.239796783435101 0.233567167455931 0.235120861013541 0.244093753061587 0.243609857388605 0.236034804191538 0.240836391476616 0.238522401219145 0.247523592630785 2 2 + 11997196 11998289 11997925.2 11995753 11998694 + gene protein_coding_gene FALSE TRUE AT2G28130.1 similar to Os01g0241100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042551.1) 0.534207805289101 4.05547163152979 0.00193985556101034 1 4.24324808467859 5.38270652529835 0.534207805289101 0.171287525817395
AT3G26570_at 10.9780157833877 11.1398682282660 11.1440492838646 11.1679218670641 10.9205308423352 10.8743456594299 12.0549673115532 12.3128011641914 12.0187189743021 12.1913887825827 12.0280393783083 11.9910072266655 11.9488383800089 11.9728795093266 11.8581944347597 12.1389925567369 11.9608050182425 12.0026771874532 12.0923575514443 0.0736933132106473 0.0684510469620707 0.0745012819039104 0.0692869502543887 0.0684510469620707 0.0728453717345497 0.0690796073763456 0.0692334734053947 0.073545898664715 0.0684510469620707 0.0696224879322395 0.0697123518772847 0.0684510469620707 0.0695588251552707 0.0715199206092137 0.0684510469620707 0.0778095789668748 0.0706933294410717 0.0684510469620707 3 3 + 9759087 9759596 9759341.091 9757428 9759870 + gene protein_coding_gene FALSE TRUE AT3G26570.1|AT3G26570.2 PHT2;1 (phosphate transporter 2;1) low affinity phosphate transporter Identical to Inorganic phosphate transporter 2-1, chloroplast precursor (H(+)/Pi cotransporter) (AtPht2;1) (PHT2-1) [Arabidopsis Thaliana] (GB:Q38954;GB:Q3EAZ6); similar to phosphate hydrogen transporter [Spinacia oleracea] (GB:CAD36013.1); similar to putative phosphate permease [Mesembryanthemum crystallinum] (GB:AAB41897.1); similar to phosphate transporter PHT2-1 [Medicago truncatula] (GB:AAN46087.1); contains InterPro domain Phosphate transporter; (InterPro:IPR001204) -0.35392188334072 -4.05546445854923 0.00193987910321959 1 4.24323751121185 23.3683130079519 -0.35392188334072 0.0534448954317625
AT3G10190_at 1.52527950782370 1.53543839839649 1.24595759448824 1.58651161984901 1.92959664081246 2.34914913127065 0.891483905823499 1.21441122804889 0.672136581119237 0.95286381686856 1.19502775289941 1.55810244002247 0.748527409893663 0.733070092029376 1.62043025039394 1.01898407717153 1.27692937245935 1.23404126256081 0.809128417061199 0.201922609333720 0.203509799849369 0.211208608025086 0.201131629109418 0.206678089831920 0.210265922142784 0.205443481748554 0.201141368839834 0.202738085049003 0.199734978949741 0.206986883224628 0.199734978949741 0.223368280316610 0.211308326065693 0.213195560972925 0.200669921411651 0.222954636639108 0.199734978949741 0.207825714865888 3 3 + 3155359 3155898 3155653.909 3155303 3156145 + gene protein_coding_gene FALSE TRUE AT3G10190.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT2G41410.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE94192.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.423956648538882 4.05519822643227 0.00194075310574771 1 4.24284506145405 2.52698618024503 0.423956648538882 0.108953901779330
AT4G14510_at 4.18214920316452 4.37661203829491 4.16035274728766 4.06276120224755 4.82142304153917 4.12796343050385 5.14071370327652 5.12836005616611 4.66741138744732 5.29524996478653 4.63599870980367 4.91548356103158 4.55493814937673 4.55707517907781 4.8646803914237 4.82498811126233 3.75554604244531 4.47056641228819 5.21969865915491 0.218843538548738 0.216411287577301 0.218676187338670 0.216748203325004 0.221760675050629 0.221449822142382 0.21983618747868 0.217204974694724 0.220215288486777 0.218518932269055 0.216411287577301 0.218637990180637 0.219506082109453 0.220866408925491 0.216411287577301 0.217374820608647 0.229610488574322 0.216411287577301 0.220577688352418 4 4|0 -|/ 8337431 8338261 8337927.3 8337272 8341155 - gene protein_coding_gene FALSE TRUE AT4G14510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to CRS1/YhbY domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94534.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.451105372852608 -4.05381225481591 0.00194530968864323 1 4.2408018495027 9.31664004783583 -0.451105372852608 0.12579285644599
AT1G04100_at 4.39650174995374 4.93680116872481 4.88390883348638 5.15266108284678 5.18705096770354 4.82284470447853 4.56643319751057 4.43156805819798 4.52421975470594 4.00644519716651 4.7499327478397 4.33088773159024 4.98905545619866 4.45655232999890 4.94583605204615 4.79064651841685 5.01690470523557 4.63897947038508 4.28553793428022 0.235375766533397 0.228035043895156 0.246475521667874 0.231646057865521 0.245140920450692 0.240384232651843 0.244626639236299 0.239380563864608 0.23592060698641 0.237578888531447 0.233128046222191 0.230706016715670 0.233240428718123 0.231374272121785 0.24182689123278 0.227627471838951 0.243593891998851 0.23172413219307 0.233999638038069 1 1|0 +|/ 1060001 1060957 1060416.4 1059505 1061190 + gene protein_coding_gene FALSE TRUE AT1G04100.1 IAA10 (indoleacetic acid-induced protein 10); transcription factor Auxin induced gene, IAA10 (IAA10). Identical to Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) (IAA10) [Arabidopsis Thaliana] (GB:Q38828); similar to IAA11 (indoleacetic acid-induced protein 11) [Arabidopsis thaliana] (TAIR:AT4G28640.2); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.448286050639183 4.05267600508232 0.00194905359041111 1 4.2391265711065 9.30317972295352 0.448286050639183 0.124188401444680
AT1G65450_at 2.64804370457824 3.14864128938573 2.29147240770162 2.70166001381001 2.33789479738949 2.50970227581298 3.81836519177765 3.99669553741012 3.50017422108793 3.99180970055001 5.90981823106649 7.04608525722829 4.7340152074181 5.00596666230315 6.00781516275577 7.48807510970062 2.99045224719912 4.53336483027558 3.42591375115287 0.341712571824907 0.341712571824907 0.348929816116964 0.344201988076524 0.34809632023749 0.344926999425611 0.341712571824907 0.346506767402954 0.347947231839369 0.341712571824907 0.367358997263473 0.374196063578241 0.341712571824907 0.357091851719496 0.355844046349283 0.375716148804768 0.350172146880596 0.346879843775256 0.344451266422099 1 1 + 24321998 24322514 24322263.273 24321527 24322727 + gene protein_coding_gene FALSE TRUE AT1G65450.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G41040.2); similar to Os11g0507200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067952.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD88037.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.441197903560188 4.05257458989723 0.00194938811456692 1 4.23897703615305 7.48343355861172 0.441197903560188 0.119917184566362
AT4G13670_at 9.90862907422872 9.7514623238325 9.51095428998366 9.32506686339413 9.49899921160112 9.42176229043885 9.74883770270435 9.81392650283962 9.94551407931913 10.1364030698008 9.51020621778401 9.97383272987302 9.57830888500482 9.79238297118495 9.62012859621172 10.0783265416173 9.76288460322924 9.78689288489063 10.1890070605626 0.114386858790520 0.120501584372304 0.120178534761416 0.119986316268203 0.121324125848638 0.119963906510397 0.114216563332847 0.114985612381535 0.127907917346346 0.114805670433466 0.129774730915894 0.119533570931196 0.115604269628624 0.114216563332847 0.124753689169098 0.114216563332847 0.121076146193126 0.114216563332847 0.116736546913817 4 4|0 +|/ 7950148 7950737 7950461 7948575 7950899 + gene protein_coding_gene FALSE TRUE AT4G13670.1 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) similar to Os04g0514400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053306.1); similar to COG3409: Putative peptidoglycan-binding domain-containing protein [Nostoc punctiforme PCC 73102] (GB:ZP_00111736.2); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) -0.346977939108295 -4.05253980010847 0.00194950288458306 1 4.23892573886049 19.5490440316872 -0.346977939108295 0.0456082329895965
AT3G24900_at 3.89487454867681 5.31612369100701 6.35140541428287 6.54494832975273 3.42004395065773 3.23440514080180 2.42648498101472 1.90573875717389 2.36910572933400 2.44609101774313 1.84783713099597 1.91888138846401 2.59206325121767 2.23993822771453 2.17882777917511 2.36272326822421 2.89022677753659 2.32748441064696 2.18610477213406 0.325533630161442 0.335159625396862 0.352793063608084 0.359058386462728 0.309244272936338 0.325107722576695 0.309244272936338 0.31053626892133 0.309244272936338 0.318981857423066 0.31041616233567 0.309244272936338 0.324134211271949 0.309658433311986 0.325496318440595 0.311190538892122 0.310828613698843 0.312501051138968 0.309244272936338 3 3 - 9099199 9099749 9099412.182 9099190 9101844 - gene protein_coding_gene FALSE TRUE AT3G24900.1 disease resistance family protein / LRR family protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G24982.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25010.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.73143791029108 4.05223079801533 0.00195052257825331 1 4.23847010977181 6.45101057782958 0.73143791029108 0.266023149612519
AT1G62830_at 4.72102469118478 5.43051187539248 3.81058875164941 4.42072405645051 4.44649705338975 3.90697185731653 4.56383710445312 4.72335493532771 4.78601149849778 4.80551555406732 4.75798741683368 4.93460398920535 4.20617673118772 4.37081290144836 4.23954826346849 4.33855337185239 3.60558861213037 4.4804620556496 4.77952608707366 0.211270723573767 0.200890745220916 0.202895812097317 0.204153909089791 0.208585140567654 0.216946784491373 0.205612683140291 0.208108232908544 0.214997267485325 0.203246876436301 0.200890745220916 0.204515991743973 0.205944170795067 0.202012619299164 0.207750942362338 0.204800414737154 0.205771669803205 0.219049175617391 0.203435507988666 1 1 - 23268328 23268872 23268568.909 23268155 23270867 - gene protein_coding_gene FALSE TRUE AT1G62830.1 amine oxidase family protein / SWIRM domain-containing protein similar to amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13682.1); similar to FLD (FLOWERING LOCUS D), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G10390.1); similar to Os04g0560300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053545.1); similar to B0103C08-B0602B01.13 [Oryza sativa (indica cultivar-group)] (GB:CAH68056.1); similar to Os02g0755200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048161.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937); contains InterPro domain SWIRM; (InterPro:IPR007526) -0.568560550356116 -4.05176756748242 0.00195205226039284 1 4.23778704207126 9.08147264777966 -0.568560550356116 0.188952437648778
AT2G02500_at 6.52133896618197 6.57588678618954 6.2520791603285 6.11498922686847 6.69877388129712 6.47158002823981 7.36188021865606 6.95033903726095 5.95690758808139 6.50930966414186 7.32601238184164 7.87355314153014 7.04542433098706 7.32317295528427 8.35549970002649 7.66379424555412 7.14622809887742 7.35418518467574 6.32609665628957 0.166783962206474 0.157991253045034 0.163100447356 0.159263789618471 0.165191276068623 0.163451806199121 0.166718080211881 0.164740976091267 0.175072992111778 0.166265187078363 0.163886359306683 0.162229721016072 0.163839775670254 0.160871437254541 0.169456302698808 0.16367534564964 0.175352404123412 0.159225878258935 0.16662370872489 2 0|2 /|- 671079 672017 671636.875 670877 673154 - gene protein_coding_gene FALSE TRUE AT2G02500.1 ISPD (2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE) Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity). Identical to 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) (AtMEPCT) (AtMECT) (ISPD) [Arabidopsis Thaliana] (GB:P69834;GB:O64726;GB:Q9LL91); similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase [Stevia rebaudiana] (GB:ABB88837.2); contains InterPro domain 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; (InterPro:IPR001228) 0.389436720393759 4.05167096438394 0.00195237142111767 1 4.23764458971882 13.5059026086368 0.389436720393759 0.085263859940802
AT2G14620_at 2.42642301462043 1.98191149285856 3.80624093774815 3.80851115983527 1.64245931019357 1.86806865989697 1.73767168579403 1.76350511724670 2.58608967948778 2.29564250242638 2.60959121620075 2.34666277430190 2.39734537383099 2.23013843364314 2.59535547260996 2.38853189974391 2.25793994809007 2.27078457098358 2.34588504934335 0.194788848697174 0.196190791238941 0.18836165813541 0.192257545844022 0.207388505032015 0.190154143225432 0.199626817123137 0.185795143073755 0.197720110307292 0.194910231961065 0.186301761767124 0.186835435847047 0.194452421719476 0.185795143073755 0.198220582145163 0.190123262005818 0.191330649712702 0.188622341184287 0.185795143073755 2 0|2 /|+ 6252452 6252842 6252651 6251863 6253315 + gene protein_coding_gene FALSE TRUE AT2G14620.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 10 precursor (EC 2.4.1.207) (At-XTH10) (XTH-10) (XTH10) [Arabidopsis Thaliana] (GB:Q9ZVK1); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT5G65730.1); similar to xyloglucan endotransglucosylase/hydrolase 2 [Rosa x borboniana] (GB:ABC55454.2); similar to xyloglucan endotransglycosylase hydrolase 1 [Medicago truncatula] (GB:AAU89381.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.390890078355795 4.05134733125105 0.00195344104796281 1 4.23716734563833 4.77747364973823 0.390890078355795 0.086382292942059
AT3G07020_at 6.69208902544304 6.9049180138578 6.76052412378526 6.72134072135234 6.95362737050522 7.22099801984626 6.86392930947458 6.71415324740674 6.4302484925331 6.2163332365729 7.09723546046556 7.00722400770049 6.92836633301906 7.10814907175259 6.98008982460212 7.0327711211929 7.2209934644362 6.62300534192086 6.52405217689288 0.174677069883676 0.175112647238809 0.183675897037325 0.177551652117510 0.16489686478982 0.180230859904195 0.175590036412073 0.19304589859713 0.185856441286165 0.181176003169732 0.168366132392568 0.176146649588394 0.178059181558679 0.174839800706347 0.169090167480969 0.173334581933757 0.183121111236614 0.181099803142906 0.173327317949142 3 0|3 /|- 2218167 2218918 2218525.625 2217628 2221708 - gene protein_coding_gene FALSE TRUE AT3G07020.1|AT3G07020.2 UDP-glucose:sterol glucosyltransferase (UGT80A2) similar to UDP-glucose:sterol glucosyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G43620.3); similar to UDP-glucose:sterol 3-O-glucosyltransferase [Panax (GB:BAC22616.1); similar to Glycosyl transferase, family 28 [Medicago truncatula] (GB:ABE85238.1); similar to UDP-glucose:sterol 3-O-glucosyltransferase [Panax (GB:BAC22617.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Glycosyl transferase, family 28; (InterPro:IPR004276) 0.364934092981663 4.05091299379886 0.00195487751896053 1 4.23652682800594 13.5489177940268 0.364934092981663 0.0649246694431657
AT3G12490_at 10.6101018840481 10.5636879963459 10.5095359998128 10.4954480683045 10.4443206117867 10.6366356493878 9.82412836855135 10.0009799346381 9.52727394277807 9.73120277617589 10.0621849989711 9.94140252271464 10.0496349837480 10.1537716117366 9.99077613400548 9.90071566793704 10.0596319168763 10.0260061758765 9.54351895590974 0.0765709808970961 0.0709509833968838 0.0740609262410562 0.0703823490995807 0.0703823490995807 0.0708538060565394 0.0716796250384018 0.0716131048644402 0.075622153963106 0.0745021757932885 0.0755440946357547 0.071537644494055 0.072170998473537 0.0720027402571677 0.0723298274818734 0.0721647860035897 0.072088638563072 0.0716362090561716 0.0740681019429658 3 3|0 -|/ 3960540 3961752 3961268.4 3960408 3961922 - gene protein_coding_gene FALSE TRUE AT3G12490.1|AT3G12490.2 cysteine protease inhibitor, putative / cystatin, putative similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G05110.1); similar to At3g12490-like protein [Boechera stricta] (GB:ABB89766.1); similar to cysteine proteinase inhibitor [Brassica rapa] (GB:ABK78689.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243)|similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G05110.1); similar to At3g12490-like protein [Boechera stricta] (GB:ABB89766.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.347055406477869 4.04992869272664 0.00195813694297523 1 4.23507517723648 20.1974451773283 0.347055406477869 0.0459864136513688
AT1G65560_at 3.06900040866648 2.94399994118635 2.31021526448278 2.26124546667829 2.50104795317038 2.81504116708607 2.97277951390727 2.87088126136281 2.47533608394683 2.34547134250512 2.12748882316048 2.26817297035994 2.08073217740783 1.88275819243846 2.39187567323472 2.23731966859213 2.98939874577078 2.11090811418881 2.65364385163847 0.210358408327388 0.201035580137229 0.214130123385529 0.211131406758551 0.201035580137229 0.211384767239683 0.212844008441502 0.201035580137229 0.214151601409420 0.203495859531387 0.204422471843120 0.210172105634620 0.201035580137229 0.206527362521233 0.201250852814522 0.211173018972288 0.215725558926397 0.201035580137229 0.213357101033538 1 1 - 24375429 24376245 24375751 24375050 24377461 - gene protein_coding_gene FALSE TRUE AT1G65560.1 allyl alcohol dehydrogenase, putative similar to AT-AER (ALKENAL REDUCTASE), 2-alkenal reductase [Arabidopsis thaliana] (TAIR:AT5G16970.1); similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT3G03080.1); similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G16990.1); similar to Os01g0891300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045054.1); similar to allyl alcohol dehydrogenase [Nicotiana tabacum] (GB:BAA89423.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149) -0.361339891072837 -4.04896406721523 0.00196133670755936 1 4.23365240739314 5.09430914957136 -0.361339891072837 0.0616711441415574
AT2G39850_at 6.38451781644244 6.52760434164541 7.65808486626044 7.766395683267 8.46849754910012 8.24083118020872 9.00928047089678 8.83811665890569 8.00227183277088 8.67080848991413 8.83889920685923 9.3727846888392 9.02911421880911 8.8683555003475 8.9694867017856 9.1272571988755 8.66703256458022 8.72519039916395 9.06082581847395 0.174527202785577 0.171308238680015 0.175626331947797 0.176152396388825 0.168002215889840 0.167173552428496 0.171892824759795 0.166327822813517 0.177294521353804 0.166692848794819 0.165426683974003 0.165699539041668 0.160123132838196 0.177498517101677 0.170593317094522 0.163532874104370 0.163952461629772 0.167955629948212 0.163130881504848 2 0|2 /|+ 16640621 16641118 16640904.5 16637551 16641331 + gene protein_coding_gene FALSE TRUE AT2G39850.1 subtilase similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59190.1); similar to subtilisin-like protease C1 [Glycine max] (GB:AAN12272.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.357684421962189 4.04639982815906 0.00196986907731666 1 4.22986963777873 16.6255329576544 0.357684421962189 0.0582590557070385
AT3G24530_at 4.62204248321284 3.99859045026109 4.45803160767976 4.59256729664268 4.00437233098399 3.86747127604723 5.04849417324259 5.06459988250545 4.7213172672696 4.53062455621115 5.08299861344118 4.50677239784077 4.26856553782834 4.49230197131819 4.58463810140319 4.12252630919623 3.9545662914893 4.17371649567998 5.15984824081226 0.214236783294528 0.205468231479269 0.213378947744660 0.210412470566080 0.201516879859874 0.211026496443561 0.208495630782004 0.201882742630561 0.214986646526472 0.202751918329582 0.204061652454939 0.204626207526380 0.207551783720311 0.207141622421238 0.205920031064983 0.2031063668087 0.209050133742233 0.214488295494075 0.201986245009081 3 3 - 8945697 8946317 8945962.273 8945432 8947945 - gene protein_coding_gene FALSE TRUE AT3G24530.1 AAA-type ATPase family protein / ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G19150.1); similar to probable CbbX protein [Sinorhizobium meliloti 1021] (GB:NP_436729.1); similar to Os02g0266300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046505.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain CbxX/CfqX; (InterPro:IPR000641); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.429245213061716 -4.04629573453191 0.00197021625912643 1 4.22971605852582 9.05811655567478 -0.429245213061716 0.112923118546445
AT3G15540_at 4.78627360979865 4.53688526640778 4.34297611699437 4.44987385996347 5.64333849684868 5.37684209451401 4.29983957885685 3.79444585506840 7.36300887997337 4.98824468623753 7.27085875455717 7.26058202749564 6.39186195901877 6.55109361981824 7.90582453166402 5.95554317338344 5.11289993271885 6.34203449190888 6.69936828116724 0.284156455088665 0.265988376728071 0.276134912980589 0.266840719701615 0.262147910142584 0.261007141534977 0.276697375973698 0.276640685433027 0.269270397566088 0.262225499786858 0.271825151418605 0.267513691114952 0.259575497163991 0.275703586223020 0.277644005354827 0.259575497163991 0.269565884884864 0.261068094303951 0.276488402742929 3 3|0 +|/ 5264144 5265338 5264520.778 5264031 5265685 + gene protein_coding_gene FALSE TRUE AT3G15540.1 IAA19 (indoleacetic acid-induced protein 19); transcription factor IAA induced protein 19 Identical to Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) (MASSUGU2 protein) (IAA19) [Arabidopsis Thaliana] (GB:O24409;GB:Q8L8X3;GB:Q9LDL6); similar to IAA6 (indoleacetic acid-induced protein 6), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52830.1); similar to Auxin-induced protein AUX22 (GB:P13088); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.42376329670423 4.04586103434713 0.00197166679688033 1 4.22907468690105 11.1283316566965 0.42376329670423 0.109458247490671
AT1G71695_at 9.77693779698793 9.8714445003044 8.77096356201765 8.90908367839173 9.3591474270475 9.3901445825755 10.7051081155977 10.6010134883622 9.66298172292084 10.0795510533194 10.2801889951931 10.5186217015031 10.5025639322463 10.2098005408356 10.5095149036758 10.3354559434822 10.2505526503496 10.3106906499474 9.98879834628572 0.0918324477408872 0.0884829758337424 0.0986412387296963 0.0990369287952272 0.0929060296661196 0.0882612330773955 0.0938165403964098 0.0935947001980196 0.0976175227843465 0.090930018308401 0.092904929950307 0.0877016772875845 0.0925259654950991 0.087893757632453 0.0911539651214163 0.0877016772875845 0.0936718976447545 0.0912510727809427 0.0919459010336813 1 1 + 26969647 26970129 26969863.818 26967911 26970350 + gene protein_coding_gene FALSE TRUE AT1G71695.1 peroxidase 12 (PER12) (P12) (PRXR6) Identical to Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) (PER12) [Arabidopsis Thaliana] (GB:Q96520;GB:Q43734); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G08770.1); similar to peroxidase [Nicotiana tabacum] (GB:AAK52084.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.338530602829726 -4.04496798458525 0.00197465027943509 1 4.22775696449864 19.8105390799920 -0.338530602829726 0.0345265516703471
AT3G19540_at 6.83850572600755 6.77967739656476 5.02978672209509 5.77942606760027 6.61726196131545 6.44809255947421 6.28059143795075 5.96796250328877 6.31615360344307 5.91937277243411 5.64187168783947 5.99809244869773 5.44910696746216 5.88893393413191 5.92418146611924 5.17577519270583 5.37849021516759 5.51753413287399 6.02561032202076 0.215447657194428 0.212586211392535 0.216604375084869 0.217611501527362 0.212586211392535 0.225788436024282 0.212586211392535 0.213576944347754 0.222777415962322 0.21511132555863 0.212586211392535 0.213426040533895 0.21588034824593 0.212586211392535 0.218247072244663 0.212586211392535 0.218709916677859 0.215785780353387 0.214908467893622 3 3 + 6782156 6782611 6782390.545 6780625 6783172 + gene protein_coding_gene FALSE TRUE AT3G19540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49840.1); similar to Protein of unknown function DUF620 [Medicago truncatula] (GB:ABD33276.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) -0.481669874336468 -4.04465785179211 0.00197568746482104 1 4.22729932695523 12.0720599575825 -0.481669874336468 0.143934783108581
AT3G55280_at 8.66446305515455 8.93464191310437 8.1371191113212 8.04044940845552 8.28516161077867 8.19646550620046 9.1710997410746 9.13297495963995 8.06480595682247 8.24947854734769 8.14549016138864 8.89291484550612 7.98779832539295 8.27173338766695 8.94034919163707 8.03325524484532 7.9719989708193 7.87132336971889 8.1571664291143 0.144311011045637 0.141266096069576 0.152680589080201 0.142067595508929 0.137025894992231 0.146219641810817 0.141737192389705 0.142159685812150 0.15338226881092 0.141253908938464 0.142291689891160 0.139908424017197 0.141004804924476 0.140024077213609 0.140149920817856 0.140685114486260 0.145806101296772 0.141778700329672 0.140584945759270 3 3|0 +|/ 20511979 20512441 20512189.6 20511312 20512686 + gene protein_coding_gene FALSE TRUE AT3G55280.1|AT3G55280.2|AT3G55280.3 60S ribosomal protein L23A (RPL23aB) Identical to 60S ribosomal protein L23a-2 (RPL23AB) [Arabidopsis Thaliana] (GB:Q9M3C3); similar to ATRPL23A (RIBOSOMAL PROTEIN L23A), RNA binding / structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G39460.1); similar to unknown [Brassica rapa] (GB:ABB97038.1); contains InterPro domain Ribosomal protein L23, N-terminal; (InterPro:IPR005633); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ribosomal protein L25/L23; (InterPro:IPR013025); contains InterPro domain Ribosomal L23 protein; (InterPro:IPR001014) -0.351894191013660 -4.04310127211053 0.00198090175608670 1 4.22500219924166 16.7810510373245 -0.351894191013660 0.0523936090551636
AT4G19720_at 2.10402568631341 2.00095901222099 2.11848230593239 2.37340516423245 1.44048591712644 1.49576580074829 1.76276039984775 2.15084332931869 2.41373160807701 2.35069694630178 0.859017524138055 1.38231766052301 1.89135659995678 1.88378544366800 1.86153634239436 1.74560600951011 1.68906567306857 1.82624748834148 2.03182923778475 0.213959858205945 0.221595825982867 0.223587458680302 0.219554802217427 0.217503045789646 0.215234057716735 0.213882788471320 0.213477909675325 0.213477909675325 0.213477909675325 0.219913497768879 0.218737303577619 0.220299411170437 0.215519277513309 0.229748801546606 0.213477909675325 0.222433372063006 0.220337563899306 0.232827442767324 4 4 - 10730410 10730681 10730557.778 10730373 10731760 - gene protein_coding_gene FALSE TRUE AT4G19720.1 glycosyl hydrolase family 18 protein similar to glycosyl hydrolase family 18 protein [Arabidopsis thaliana] (TAIR:AT4G19810.1); similar to chitinase, class V [Nicotiana tabacum] (GB:CAA54373.1); similar to chitinase/lysozyme [Nicotiana tabacum] (GB:CAA55128.1); contains InterPro domain Chitinase II; (InterPro:IPR011583); contains InterPro domain Glycoside hydrolase, family 18; (InterPro:IPR001223); contains InterPro domain 2-S globulin; (InterPro:IPR000677) -0.385332490634894 -4.04156208001736 0.00198607190135048 1 4.22273038604864 3.88473388034483 -0.385332490634894 0.0828627635155066
AT1G31860_at 4.34626295397141 4.28472701511441 2.71085656205403 2.9711318538051 3.66153042995204 3.46004200898998 4.75843652727414 4.51865016517114 3.89026378185807 3.65926257357490 4.65570838640798 5.62318246805113 3.68157723877177 4.38343398690433 5.80605581633519 4.30334436230644 3.29195289161979 4.43609954382647 4.41646710599849 0.23941711312746 0.234317316871003 0.231634618642394 0.235513978539348 0.232868693658617 0.236904891459939 0.239847945313734 0.24348524530528 0.246496722112981 0.229758281922260 0.232182277943184 0.23919639334681 0.237803963829697 0.234939900981619 0.238919190400116 0.234382285253936 0.242544908591955 0.238696481699022 0.229758281922260 1 1 - 11434257 11435044 11434645.091 11434088 11436587 - gene protein_coding_gene FALSE TRUE AT1G31860.1 AT-IE (Arabidopsis thaliana bifunctional HisI-HisE protein) encodes a bifunctional protein that has phosphoribosyl-ATP pyrophosphohydrolase (PRA-PH) and phosphoribosyl-AMP cyclohydrolase (PRA-CH) activities. Identical to Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor [Includes: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (PRA-PH)] [Arabidopsis Thaliana] (GB:O82768); similar to phosphoribosyl-ATP pyrophosphohydrolase/phosphoribosyl-AMP cyclohydrolase [Alyssum lesbiacum] (GB:AAT74591.1); similar to Os01g0276500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042729.1); contains InterPro domain Phosphoribosyl-ATP pyrophosphohydrolase; (InterPro:IPR008179); contains InterPro domain Phosphoribosyl-AMP cyclohydrolase; (InterPro:IPR002496) -0.371062051024206 -4.04056567170117 0.00198942633067605 1 4.22125952665008 8.09462160150238 -0.371062051024206 0.0712735213138758
AT1G30260_at 10.2148966981074 10.5283883375104 10.4712788990156 10.7303726345443 10.8562470091204 10.7924929582302 10.4126970378926 10.7650494362867 9.73780644023616 10.4110558105425 10.8869405319026 10.5465024732714 10.8142202308450 10.6300799952249 10.0342752631781 10.3069847014261 10.5694332737248 10.6914174412054 9.82880082170221 0.101243310298100 0.0963370176179514 0.107762033223269 0.0967508411169824 0.090431727616167 0.0976495913479074 0.0939821778035334 0.0935846769924156 0.100717004167437 0.0944079328539843 0.0951721576685402 0.0956399116559934 0.090905408947539 0.0988565484880116 0.0992945293204861 0.0952913030677058 0.0976119188921733 0.094311998651613 0.090431727616167 1 1 + 10651143 10651379 10651244.636 10651035 10651712 + gene protein_coding_gene FALSE TRUE AT1G30260.1 AGL79 (AGAMOUS-LIKE 79) similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90936.1) 0.399883689566023 4.03971748665212 0.00199228641379132 1 4.22000735546855 20.8726959245089 0.399883689566023 0.093773173238576
AT2G47050_at 1.27875462957752 0.908243178328014 1.09536071515697 1.30258911649143 1.09251188502000 1.20857044907649 1.04506847772733 1.12484075298231 4.15658641400756 1.10481063485314 1.40166758413539 1.53133452419631 1.34112469083188 1.52597009006861 1.50712618143319 1.05983547546412 1.36461835491348 2.06086688057241 1.68592448175512 0.232460176046365 0.235707197620479 0.232307441971532 0.232307441971532 0.232307441971532 0.235592292959684 0.236353223250784 0.232307441971532 0.246055289514155 0.235970493293050 0.233672240162335 0.232307441971532 0.236286299519038 0.238383206819163 0.232307441971532 0.236175921322502 0.249442687402428 0.233631305275775 0.251127659709615 2 2 - 19338998 19339572 19339301.455 19338755 19339716 - gene protein_coding_gene FALSE TRUE AT2G47050.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT3G62180.1); similar to Probable pectinesterase precursor (Pectin methylesterase) (PE) (GB:P41510); similar to pollen development related protein [Brassica rapa subsp. chinensis] (GB:ABC25451.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186) -0.378087294527128 -4.03764988146334 0.00199927634833815 1 4.21695452461519 3.02691330866527 -0.378087294527128 0.0774031459341609
AT3G53970_at 6.72614753470108 6.83519110189309 7.29506086661713 7.26812683277763 7.47167133228316 6.95978232130288 6.77862817374906 6.89599479191807 6.29030042990664 6.16794336190938 6.41774561037195 6.40606671798807 6.72895804360895 6.98949317401884 6.02708564988908 6.96976914829274 6.58261528143133 6.45131994631388 6.18479369201498 0.195408311147679 0.200623157069851 0.199033928289382 0.195408311147679 0.198837325883474 0.211211360517479 0.201535126228095 0.203745570810397 0.214390654482222 0.201338795556988 0.195408311147679 0.202327110403124 0.197771143968384 0.206812007463188 0.198166749236963 0.195408311147679 0.206459851964087 0.20248145240847 0.201681718678468 3 3|0 +|/ 19996721 19998085 19997605.5 19996124 19998317 + gene protein_coding_gene FALSE TRUE AT3G53970.1|AT3G53970.2 proteasome inhibitor-related Identical to Probable proteasome inhibitor [Arabidopsis Thaliana] (GB:Q9M330); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48530.1); similar to hypothetical protein MtrDRAFT_AC142224g2v2 [Medicago truncatula] (GB:ABE84928.1); contains domain PROTEASOME INHIBITOR (PTHR13266:SF1); contains domain PROTEASOME INHIBITOR (PTHR13266) 0.398477903112782 4.03733188644238 0.00200035365595017 1 4.21648494831131 13.4218141316218 0.398477903112782 0.0929387690453273
AT1G63660_at 6.8004346492004 7.07023521033891 6.59761221497902 6.82636871737575 6.39230151830833 6.72831542270482 6.93815056833623 7.3434209639268 5.13688938055135 5.62947042373152 4.41063965102047 4.92893384969093 4.94982885207337 4.78060205032849 5.50092859850462 5.63942055528387 5.8797730762739 5.09518866930898 6.00967164593187 0.242123150092429 0.242261663032908 0.240622642315241 0.241394700941458 0.241529137259767 0.240305174845611 0.241724896761815 0.251258381096965 0.243490198973739 0.240190795375774 0.246536235897366 0.244711333742985 0.241366243415961 0.246804329573284 0.242344906327154 0.240981373899899 0.247225691724165 0.250906879558138 0.24007395439861 1 1|0 -|/ 23607808 23608979 23608570.8 23607598 23610938 - gene protein_coding_gene FALSE TRUE AT1G63660.1|AT1G63660.2 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative similar to GMP synthase (ISS) [Ostreococcus tauri] (GB:CAL58135.1); similar to Os08g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061552.1); similar to GMP synthetase [Chlamydomonas reinhardtii] (GB:AAO45104.1); contains InterPro domain tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; (InterPro:IPR004506); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain GMP synthase, C-terminal; (InterPro:IPR001674); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain GMP synthase, N-terminal; (InterPro:IPR004739)|similar to GMP synthase (ISS) [Ostreococcus tauri] (GB:CAL58135.1); similar to Os08g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061552.1); contains InterPro domain tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; (InterPro:IPR004506); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain GMP synthase, N-terminal; (InterPro:IPR004739) -0.422878475101473 -4.03295068264508 0.00201525806790936 1 4.21001383356326 12.2071923562540 -0.422878475101473 0.109759682483834
AT3G54810_at 4.84004895788512 4.92463710157941 5.21118749661567 5.30979710088124 4.09859164812945 4.38904411585985 4.98177848693549 4.93850960903087 4.54951118900784 3.52675650664134 6.18125814709368 5.64415792271084 4.65865458527173 5.65448048388807 5.06074557559739 3.85737398209386 4.20493917532446 4.5489783538439 4.2224073392633 0.202997396181127 0.192636673051109 0.191732579567433 0.194068653148171 0.191732579567433 0.201767983758533 0.194754562704788 0.194300711584975 0.191732579567433 0.197109803856587 0.197136642599476 0.199967661720116 0.200534030898991 0.200730395757231 0.195175584880882 0.195420515080391 0.199659350799402 0.200894728221648 0.194424626951926 3 3 + 20308659 20309167 20308866.455 20307210 20309669 + gene protein_coding_gene FALSE TRUE AT3G54810.1|AT3G54810.2 BME3/BME3-ZF (BLUE MICROPLYLAR END3); transcription factor Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. Identical to GATA transcription factor 10 (AtGATA-10) (GATA10) [Arabidopsis Thaliana] (GB:Q9SV30); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT1G08010.2); similar to AG-motif binding protein-1 [Nicotiana tabacum] (GB:BAC98491.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.353838367385497 4.032025225428 0.00201842115098931 1 4.20864656270996 9.37464025121405 0.353838367385497 0.0555701780174433
AT4G12120_at 4.6299871447562 4.22364276569651 5.22649975704113 4.84266061411381 5.06038458281635 4.36707093222726 4.14570416014255 3.73405507376036 3.43764194366922 4.04846764434262 4.41669646561136 4.17771734563257 4.1467634285999 3.95405971672793 3.91590810672521 3.86959690523427 4.56909859482923 3.51432277994894 3.6316855030274 0.224689725337588 0.217486000728973 0.231313356342551 0.22661521046769 0.214021849803057 0.238139833153181 0.214021849803057 0.221426780682492 0.231974279217772 0.219030257755043 0.216850101780548 0.214021849803057 0.217358621505456 0.219638126737921 0.221834546184433 0.214021849803057 0.218218215929157 0.225344154755628 0.217748236200766 4 4|0 -|/ 7256859 7257746 7257328.444 7256532 7261174 - gene protein_coding_gene FALSE TRUE AT4G12120.1 SEC1B; protein transporter member of KEULE Gene Family Identical to Protein transport Sec1b (AtSec1b) (SEC1B) [Arabidopsis Thaliana] (GB:Q9SZ77); similar to SEC1A, protein transporter [Arabidopsis thaliana] (TAIR:AT1G02010.1); similar to KEU (KEULE), protein transporter [Arabidopsis thaliana] (TAIR:AT1G12360.1); similar to Probable protein transport Sec1a (GB:Q7XWP3); similar to Sec1-like protein [Medicago truncatula] (GB:ABE87444.1); similar to Sec1-like protein [Medicago truncatula] (GB:ABE92383.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.527697703180664 4.02795283403837 0.00203240157942602 1 4.20262854381605 8.41697668628265 0.527697703180664 0.169786560635116
AT1G15980_at 11.0563188255111 11.1120991308348 10.7842775440964 10.8683760623704 11.1333893473102 10.7482498064626 11.9504460863816 11.798418255455 12.1245740725099 12.2049706891547 12.0382490672731 12.0750270324690 11.7835807923914 12.0605925981520 11.8720370278184 12.1832761914218 11.8388705738468 12.1774718148072 12.1303590958495 0.0782445318555004 0.0758279642139304 0.0826889908406756 0.0778278271352725 0.0768940288743818 0.0786935510702532 0.080309996501039 0.0758279642139304 0.0890685580923267 0.0758279642139304 0.0798193446938028 0.0760153265363223 0.0768731991936935 0.0803503709436833 0.0788385778208826 0.0761080386531149 0.083517660567702 0.0758279642139304 0.0758279642139304 1 1|0 +|/ 5490370 5491169 5490759.444 5489292 5491357 + gene protein_coding_gene FALSE TRUE AT1G15980.1 similar to Os08g0276100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061432.1); similar to COG0859: ADP-heptose:LPS heptosyltransferase [Nostoc punctiforme PCC 73102] (GB:ZP_00111141.1); contains domain UDP-Glycosyltransferase/glycogen phosphorylase (SSF53756) -0.372705266525651 -4.02702989105587 0.00203558401783502 1 4.20126432336573 23.2599165938580 -0.372705266525651 0.0737523428510677
AT1G12640_at 7.59550792474078 8.27446819112983 8.18694241615062 8.26082928483672 8.3188428917259 8.0461948623342 7.12679543975878 8.14141620690118 7.07070963907397 6.26455684679784 7.51498857317047 7.29900126077049 8.15229302438176 7.6191813482904 6.87053313242759 7.67128446637224 7.09860879333051 6.71409171987623 6.29239658972249 0.228195995487012 0.220365343290459 0.228009909776975 0.219325998265110 0.227745846258221 0.230307879336774 0.219220626224760 0.219220626224760 0.235851523639886 0.224749693728869 0.224353802360621 0.221280102333601 0.226605806754841 0.237063817495813 0.239571130353606 0.2244576423563 0.231271282219828 0.227469509986123 0.219220626224760 1 1|0 -|/ 4303625 4304395 4303928.625 4303310 4305796 - gene protein_coding_gene FALSE TRUE AT1G12640.1 membrane bound O-acyl transferase (MBOAT) family protein similar to membrane bound O-acyl transferase (MBOAT) family protein [Arabidopsis thaliana] (TAIR:AT1G63050.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL58542.1); similar to Os02g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047723.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) 0.621799427212623 4.02604299716554 0.00203899271048935 1 4.19980544027904 14.9489007263767 0.621799427212623 0.216853345821524
AT1G20010_at 10.3522137765622 10.2997195963926 9.69131453007173 9.65130212899787 10.5864357571312 10.405652315576 9.76034479642885 9.91338442434048 10.3640423497861 10.0866438894895 11.2519983147364 11.0662881673818 11.0157546198835 11.1358714372042 11.0987085118993 10.6316009857373 10.2562190476771 10.8463027337154 10.2410476677452 0.0957723580742016 0.0957942740841958 0.103020855772626 0.0925663475160056 0.0930420076708463 0.105460174849957 0.0945089041590394 0.101987380064603 0.104399026501874 0.0925074821978318 0.0944738810767298 0.0939267174246536 0.0925074821978318 0.0951538750133181 0.0930418531972899 0.0959932128285094 0.108111109356738 0.0939173646170343 0.0944185995779009 1 1 - 6938093 6938592 6938331.273 6937786 6940573 - gene protein_coding_gene FALSE TRUE AT1G20010.1 TUB5 (tubulin beta-5 chain) beta tubulin Identical to Tubulin beta-5 chain (Beta-5 tubulin) (TUBB5) [Arabidopsis Thaliana] (GB:P29513); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB1 (tubulin beta-1 chain), structural molecule [Arabidopsis thaliana] (TAIR:AT1G75780.1); similar to Tubulin/FtsZ family, GTPase domain, putative [Medicago truncatula] (GB:ABE90057.1); similar to Tubulin beta-3 chain (Beta-3 tubulin) (GB:Q9ZRB0); similar to beta-tubulin [Lycopersicon esculentum] (GB:ABB13293.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.342262771392809 4.02475201996916 0.00204346067164372 1 4.19789683249589 20.6542563888308 0.342262771392809 0.0425518903166946
AT4G29660_at 7.48157808922242 7.17618091225698 7.71078403996406 7.48877222834713 7.58433107629682 7.64148929570387 6.5294621440486 6.55741964236333 6.061431110525 5.6781025203485 6.18132463598196 5.72685555925788 5.9227309375193 5.87326815220726 6.12666697742083 5.97466244455131 6.34923318706996 5.86722922104423 6.09549982038012 0.191282913856008 0.190319490486189 0.189543436148215 0.194589503492205 0.200223854057494 0.194870551202015 0.191156222890232 0.194694239670411 0.189015015748260 0.190521759431276 0.189015015748260 0.189350044227946 0.194990075161335 0.192391745735324 0.192698872440419 0.197396465775666 0.197824182807575 0.192276114317199 0.189015015748260 4 4 - 14534501 14535151 14534824.636 14534269 14535298 - gene protein_coding_gene FALSE TRUE AT4G29660.1 EMB2752 (EMBRYO DEFECTIVE 2752) similar to hypothetical protein MtrDRAFT_AC146632g4v2 [Medicago truncatula] (GB:ABE85807.1); contains domain gb def: Hypothetical protein T16L4.170 (Hypothetical protein At4g29660; T16L4.170) (PTHR19317:SF1); contains domain PRENYLATED RAB ACCEPTOR 1-RELATED (PTHR19317) 0.363959601034427 4.02414942735851 0.00204554968214433 1 4.19700586496902 13.2451309484251 0.363959601034427 0.0662610384960244
AT1G29390_at 9.5952747827566 9.7235793459457 9.71318004989424 9.64807096242103 10.1336874980276 9.7295725797129 9.70645335321167 9.64014047772507 9.75900958386013 9.39679688911082 10.4444306597818 10.0667404774479 10.0944459735292 10.1637024464395 10.1256578620845 10.3537749571697 9.86655534769971 10.1964399449085 9.51130130715864 0.106616717573483 0.10188555985478 0.106434764124772 0.110750675848389 0.101655138045283 0.122641427908427 0.108142759458720 0.102431023479418 0.116894290377327 0.101655138045283 0.106880838779577 0.101655138045283 0.103628735041587 0.109208482491662 0.105514269783943 0.101705063104811 0.111280206979597 0.111295105801787 0.102731936196137 1 1|0 -|/ 10286399 10287749 10287089.889 10286279 10288089 - gene protein_coding_gene FALSE TRUE AT1G29390.1|AT1G29390.2 COR314-TM2 (cold regulated 314 thylakoid membrane 2) encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane. similar to COR414-TM1 (cold regulated 414 thylakoid membrane 1) [Arabidopsis thaliana] (TAIR:AT1G29395.1); similar to cold acclimation protein COR413-TM1 [Triticum aestivum] (GB:AAO24627.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.374015823930118 4.02370054270402 0.00204710727794840 1 4.19634212952674 19.5960804072164 0.374015823930118 0.0751159947972984
AT1G18940_at 2.53208964147597 2.97224213831986 3.08209182289526 2.84962701628655 2.72703264356244 2.64427096741772 3.12611871797258 2.97032197221314 3.01371592877949 3.34283717544594 2.21120566066513 2.36642584132399 2.67551926633712 2.68406160659803 2.36102612853566 2.21201229275935 2.34456755480685 2.84808367666711 3.1783082277423 0.17883392745085 0.178620331144832 0.185887359267327 0.181981856563322 0.181996719837341 0.184806008082845 0.191750566424135 0.184840251969989 0.182749540352603 0.178620331144832 0.182432147113688 0.189806058707786 0.1876309874327 0.182827546419751 0.186066407611843 0.180860875553580 0.181416438405952 0.178818875797127 0.178620331144832 1 1 + 6545030 6545497 6545300.818 6543843 6545583 + gene protein_coding_gene FALSE TRUE AT1G18940.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT1G74780.1); similar to Unknown similar to A.thaliana Hypothetical protein yhjx (F25A4.25) [Triticum aestivum] (GB:CAH10046.1); similar to Unknown similar to A.thaliana Hypothetical protein yhjx (F25A4.25) [Triticum tur (GB:CAH10068.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) -0.394930931074575 -4.02310653578617 0.0020491703359452 1 4.19546376711856 5.68354929707672 -0.394930931074575 0.0913912522581487
AT1G17330_at 3.70039409383412 3.09691079517191 3.82093123214888 3.81152114757285 3.4606283282503 3.49512664991718 3.21138969665472 2.64407178962958 2.4237477150375 2.00316833616215 2.81606476018596 2.80882236406115 2.82920813632592 2.86538099641215 2.83014335987564 2.64503639600213 2.79514634008486 2.75265566735614 2.53396489642782 0.223191600614726 0.218893868055456 0.216164715315332 0.227560914323675 0.215425863590404 0.219842984000512 0.212083206918201 0.216729855211378 0.221622901861700 0.219385296791349 0.215518108165560 0.213781259729665 0.212083206918201 0.213626200103200 0.223237319057735 0.220154473424164 0.212083206918201 0.216128775534739 0.219765690659856 1 1|0 +|/ 5930012 5930092 5930049.857 5929902 5931824 + gene protein_coding_gene FALSE TRUE AT1G17330.1 metal-dependent phosphohydrolase HD domain-containing protein-related similar to Metal-dependent phosphohydrolase, HD re (GB:ABE85064.1); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674); contains InterPro domain Putative DNA binding; (InterPro:IPR009061) 0.47818692448928 4.02237181033668 0.0020517251221926 1 4.19437725312032 5.96167216752102 0.47818692448928 0.143470601734033
AT3G51550_at 9.63255993189521 9.599475194798 9.38533792344086 9.47294413105295 9.775454656125 9.61180070861698 8.92847727479015 9.4691046543395 9.58574560388633 9.17639067894072 10.3089948090972 9.8661149790135 10.1399467346791 10.1143268287704 9.9970871970354 9.81973235927134 9.57706558547532 9.45892995870505 8.99620953789208 0.0935023450988803 0.0885127434462691 0.0918362809261934 0.0897835217101417 0.0879062456680534 0.0919444174023834 0.0926916234165926 0.0902999825119585 0.091687245706429 0.0898004547348901 0.0858383515009584 0.0858880874731835 0.0856585840125815 0.0856585840125815 0.087699610150654 0.0856585840125815 0.0918534095561365 0.0876785706389019 0.0946560665847372 3 3 - 19128884 19129418 19129205.273 19128563 19131860 - gene protein_coding_gene FALSE TRUE AT3G51550.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G04690.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD81103.1); similar to receptor protein kinase-like protein [Capsicum annuum] (GB:AAL40864.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.405736478559721 4.02227939903614 0.00205204668938663 1 4.19424058955294 19.0659226827551 0.405736478559721 0.0990849447915006
AT1G08315_at 4.41391930512651 4.60346226070165 4.32043444324095 4.19661117147176 5.54423736576877 5.68867765406255 3.95955294882694 4.25003023079888 4.30032157918967 3.40996160685927 4.32869069649396 3.16368176603312 4.02505976746718 3.81806890055862 3.73313187083768 3.58111740586963 3.57586806440456 4.03885674541320 3.33406189086343 0.228034838987141 0.226665140141897 0.232100062367908 0.227954040749937 0.226738926743171 0.230886189476379 0.226735407785146 0.224227637388855 0.227893876296961 0.230110304715844 0.226444489934975 0.224913370253442 0.227548130516372 0.236090996985526 0.228280064690064 0.225462165213620 0.235197356233480 0.230486804111598 0.230179607475923 1 1 - 2620554 2621069 2620844.909 2620332 2621542 - gene protein_coding_gene FALSE TRUE AT1G08315.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23140.1); similar to Armadillo [Medicago truncatula] (GB:ABE83790.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.366180007718234 4.02201155247746 0.00205297902201946 1 4.19384447451427 8.35436955305252 0.366180007718234 0.0684602987697634
AT1G01790_at 9.81067925406159 9.77773987919993 9.04105717719399 9.0682669788412 9.72977398718773 9.09263052667498 10.4459243103556 10.1837032440923 10.3213630145956 10.5269908838561 10.38103828331 10.6737312003881 10.4232215505773 10.4881671073234 10.3603224491227 10.8139848938889 9.8491576343435 10.3531540881638 10.5627024932066 0.132610810432768 0.127346344135405 0.142121426361570 0.133535470569574 0.129836715235354 0.14087781252641 0.132224255445349 0.129985458720549 0.140391164103231 0.129694791239993 0.136323945118058 0.127346344135405 0.127346344135405 0.13006036028009 0.138447651004389 0.127346344135405 0.143468687925814 0.136462374442395 0.127346344135405 1 1 + 289718 290801 290276.8 286198 291089 + gene protein_coding_gene FALSE TRUE AT1G01790.1 KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter K efflux antiporter KEA1 similar to KEA2 (K+ efflux antiporter), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT4G00630.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); similar to Os04g0682800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054299.1); similar to TrkA-N [Medicago truncatula] (GB:ABD28435.1); contains InterPro domain Potassium efflux system protein; (InterPro:IPR004771); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain TrkA-N; (InterPro:IPR003148) -0.437042242057952 -4.02119617800181 0.00205581993138268 1 4.19263856371008 20.0878215604221 -0.437042242057952 0.119462512695393
AT2G34090_at 4.44753141405496 4.17862964087638 3.91500907849269 3.7038974677988 4.54919820374053 3.85699777697931 2.98706707045571 2.88477640387866 3.53407626731376 3.74871021237095 4.66947267869303 4.05293008030208 4.03104238503443 4.00417588334045 4.34601193428473 3.89085948385059 4.15735697147367 4.05331713755908 3.53799543537028 0.208818086826241 0.204821232957298 0.210369099762638 0.206688553941431 0.215740071147878 0.204821232957298 0.216353662023613 0.219200713632663 0.223133292633036 0.206838738828828 0.204821232957298 0.225248562079362 0.204821232957298 0.210025692590964 0.214521989612539 0.208313509877648 0.208587163613558 0.209309347680476 0.227162555204021 2 0|2 /|- 14403377 14404056 14403624.333 14403095 14406344 - gene protein_coding_gene FALSE TRUE AT2G34090.1|AT2G34090.2 MEE18 (maternal effect embryo arrest 18) similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61229.1); similar to Os01g0613900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043564.1); contains InterPro domain Protein of unknown function UPF0052 and CofD; (InterPro:IPR002882) 0.462746506867665 4.02115924954068 0.00205594869355793 1 4.19258394552931 7.69417494420242 0.462746506867665 0.134769599893107
AT1G73090_at 5.89901208765124 5.99966495810782 5.58135923872057 5.35531548231707 6.20718943470864 5.95473385782217 6.61852744683296 6.46054694799924 5.01878333092825 5.37540274758208 5.10519443597284 5.11965779900426 5.46922001568863 5.09968876493206 4.70817604377549 5.36346874825033 5.30472650863057 4.84438699082336 5.76367417770272 0.233246077835802 0.216534646487826 0.21459532338715 0.217278028574050 0.218428491540803 0.223766243561110 0.217199244574231 0.219885854307369 0.219091039580934 0.216945612165538 0.224051655517671 0.214273941510382 0.224688739286414 0.214273941510382 0.216247621913319 0.214273941510382 0.219804484590006 0.225161672743379 0.214273941510382 1 1|0 +|/ 27492875 27494134 27493489.714 27491878 27494427 + gene protein_coding_gene FALSE TRUE AT1G73090.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE87174.1) -0.364463431054344 -4.0207659851869 0.00205732044893933 1 4.19200228491263 11.2659278478312 -0.364463431054344 0.0670055582895259
AT3G22290_at 6.15274669964904 6.14876900982113 6.09075614475772 6.31739687704793 6.73365417650006 6.49597664971315 5.86349420623468 5.95113795966204 5.29772360186787 5.59156711486786 5.96531272574407 5.95750436963509 6.09957468851023 5.850238609972 5.42813267929006 5.76129973823455 5.79826584936629 5.83427816985798 5.6270632205202 0.180621142641208 0.166116847973739 0.174528022955422 0.171528501539992 0.168501663409322 0.176581721852089 0.173727170179989 0.172286873321832 0.180895138557327 0.172305769652806 0.166116847973739 0.175617284470695 0.167991655565455 0.167706495563902 0.179430639503793 0.170156525517048 0.173720322066077 0.171963273887868 0.169764615888692 3 3|0 +|/ 7882091 7885208 7883856.818 7881568 7885586 + gene protein_coding_gene FALSE TRUE AT3G22290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36050.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_792057.2); similar to Os03g0784400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051473.1); similar to Os04g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052965.1); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) 0.355891767285314 4.01983854988772 0.00206055923508805 1 4.19063046692462 11.8903800485457 0.355891767285314 0.0588268467876529
AT4G35270_at 7.04590249080319 7.7133346178671 6.9930462250843 7.26465114259797 7.44168721226205 7.3723718340489 7.71494946829981 8.06542639441692 6.75933838075524 7.51941607551329 6.32922746619767 6.93149649228063 6.42425732694934 6.55852372790425 5.87271131258442 7.43372607609579 7.72646188892686 6.06309411485466 7.44424484423293 0.27842486271553 0.266877699521922 0.27963939232753 0.285836601567322 0.258585911791596 0.258115388684461 0.263669219747443 0.26162576087023 0.272698038894093 0.276694069795313 0.267569673743802 0.258115388684461 0.26872061955542 0.267257371834749 0.284923575627666 0.258115388684461 0.265986130432067 0.273000835997523 0.258115388684461 4 4 - 16777710 16778061 16777927.875 16777343 16780829 - gene protein_coding_gene FALSE TRUE AT4G35270.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G17150.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.470263302729031 -4.01954917137536 0.00206157088810024 1 4.19020240682143 14.4056397069515 -0.470263302729031 0.139185185467563
AT3G47560_at 8.6165369479138 8.73232212347189 8.25471661966771 8.12734125299094 8.70100857093793 8.36020015181192 9.17616285439443 8.99866377240805 9.46572764730474 9.3835075967586 9.35436148480155 9.3409445497975 8.74943262985223 9.22933335941851 9.37698223286893 9.19223111238074 8.87082129837905 9.2395003550155 9.32249327780483 0.115542443126206 0.108171683914961 0.123700745316564 0.119737962951729 0.111538863115182 0.115458732529009 0.105956369861923 0.109978003886493 0.109743469936388 0.111870395994700 0.111744555281784 0.105956369861923 0.107939731599420 0.117066548219305 0.108868978349118 0.108031603079628 0.111827145168991 0.106734366615441 0.117108844338757 3 3 - 17536671 17537298 17536996.455 17536470 17538037 - gene protein_coding_gene FALSE TRUE AT3G47560.1|AT3G47560.2 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G29840.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0580000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043403.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379)|similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G29840.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.37074003591836 -4.01702005781294 0.00207043458800487 1 4.18646073185331 17.9007575625847 -0.37074003591836 0.0728654658220577
AT4G20480_at 7.97311832663574 8.15746752467703 8.57236239267992 8.33543286011496 8.69491387504435 8.66523896525055 7.79543727230377 8.04279165553113 7.43413162890362 7.7843450439442 7.55765511372797 7.83990842759973 7.72206002670605 7.86069552960334 7.71492364668817 8.14012198494416 7.90900323338197 7.37617565623775 7.61313589519955 0.170905874701155 0.164454059221998 0.173184327468737 0.164934073539231 0.167608210548798 0.167906004606543 0.173221422712497 0.165503411158476 0.180718500737009 0.160372120585185 0.160372120585185 0.160372120585185 0.163537712985121 0.170263352095645 0.167492035880021 0.167249914684972 0.179978069397724 0.163666964373186 0.169431555558129 4 4 - 11034498 11035170 11034843.545 11034283 11035885 - gene protein_coding_gene FALSE TRUE AT4G20480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05400.1); similar to 80C09_3 [Brassica rapa subsp. pekinensis] (GB:AAZ41814.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to Os11g0167300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065838.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.364656879082109 4.01680535757016 0.00207118886585764 1 4.18614305328796 15.9673980965515 0.364656879082109 0.0675101795182888
AT3G10500_at 8.48757702724697 8.88874467588425 9.42277891727498 9.50433657027156 8.87489241481379 8.65740275008229 7.1414326462554 6.89948723243612 6.8146825367047 7.25633527725768 6.3407521562571 6.61028013760632 6.10956899910239 6.25632402831224 6.18525460168934 6.65387963458061 7.16746881116037 6.44517115224177 6.76562351181466 0.251271419783604 0.246138150093133 0.255608730922627 0.245861894036233 0.240928831094880 0.263545655656986 0.249943377889236 0.238444760396075 0.252779502556547 0.239815487555023 0.234089347764099 0.237155476238095 0.239711699359644 0.237813837698006 0.233782841387625 0.231733152852486 0.242726491434063 0.25306608163123 0.239591082161053 3 3|0 +|/ 3273176 3273864 3273646.7 3271495 3274035 + gene protein_coding_gene FALSE TRUE AT3G10500.1 ANAC053 (Arabidopsis NAC domain containing protein 53); transcription factor similar to NAC2 (Arabidopsis NAC domain containing protein 78), transcription factor [Arabidopsis thaliana] (TAIR:AT5G04410.1); similar to nam-like protein 9 [Petunia x hybrida] (GB:AAM34772.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.393041299590694 4.01642585117512 0.00207252283523657 1 4.18558150519979 15.1928988036387 0.393041299590694 0.0904906246870317
AT3G07910_at 8.07083474182948 8.15185241661433 8.32178351107288 8.34772747912489 8.6368213529491 8.21977010983238 8.3646934102932 8.26460601087486 7.66617251261966 7.96639513965525 8.44278133887636 8.7261461481539 8.2875791907809 8.34105026344387 8.66930110913252 8.41500939070039 8.39918492954048 7.9354528567585 7.83546150150685 0.107163124794219 0.103443740029548 0.103167735029458 0.103679294558379 0.102118012028235 0.102048994226369 0.102085774281665 0.103834417860442 0.109888846191841 0.103762061308701 0.102905169769105 0.100631895102594 0.108659174675702 0.112414733797926 0.0992821096032184 0.0984626755365366 0.122396426618632 0.105819424394297 0.110125327168557 3 3|0 -|/ 2523387 2524017 2523617.625 2523163 2524171 - gene protein_coding_gene FALSE TRUE AT3G07910.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51812.1) 0.373957868585644 4.01597413712687 0.00207411178154259 1 4.18491308602158 16.4096308980825 0.373957868585644 0.0756678781707148
AT2G45970_at 3.30448298180904 3.54346503130634 2.45390943987893 2.36886019946855 3.19815514440350 3.48017084151758 4.69362151070699 4.36283829814632 4.72794259409182 4.42553567928461 5.67140094665172 5.75612434438623 5.14964684463164 4.59767152134969 5.24755667974404 4.86154182567685 4.40840845856281 4.10850711972708 4.79989592038093 0.269034231888657 0.26549687115705 0.29930543767338 0.283992257623399 0.260786667283905 0.278525246037024 0.260037931170585 0.25932691574783 0.280149372891646 0.269853102952547 0.272857634507498 0.265272358073640 0.26291907173249 0.279303572572889 0.263099753209191 0.25932691574783 0.269840510092131 0.262641328681919 0.271945356328140 2 2 - 18919675 18920168 18919956.091 18919333 18921812 - gene protein_coding_gene FALSE TRUE AT2G45970.1 CYP86A8 (LACERATA); fatty acid (omega-1)-hydroxylase/ oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. similar to CYP86A4 (cytochrome P450, family 86, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01600.1); similar to CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G63710.1); similar to CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G00360.1); similar to cytochrome P450 monooxygenase CYP86A24 [Glycine max] (GB:ABC68403.1); similar to cytochrome P450 [Triticum aestivum] (GB:AAG17470.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE91393.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.388422781418114 -4.01597130382937 0.00207412175193290 1 4.18490889338688 8.23880390532651 -0.388422781418114 0.0870958833861522
AT2G23420_at 6.79021986496306 6.9598905597603 7.0765024532953 7.15279813597366 7.09363860668103 6.36467891995674 7.97123748721363 7.88453770214836 7.38116416854838 7.4760242396075 6.95899541947721 6.87240026872227 6.56263666044234 7.09702052266767 6.57971541433084 7.47045295297182 7.32659999599847 6.90959453949651 7.35520338077161 0.157821996404715 0.157235370434800 0.159774097876994 0.160004615074091 0.163070867601804 0.164866655231838 0.166256991896571 0.170372060170588 0.164272761921874 0.165144070181123 0.16036599503937 0.157299063330574 0.16769961255485 0.173604013684891 0.174367434132237 0.157142004364826 0.172982088042886 0.16332511194744 0.164725058628812 2 2 + 9981156 9981927 9981518.364 9978825 9982272 + gene protein_coding_gene FALSE TRUE AT2G23420.1 nicotinate phosphoribosyltransferase family protein / NAPRTase family protein similar to nicotinate phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G36940.1); similar to B0222C05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66393.1); similar to nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] (GB:AAP69614.1); similar to Nicotinate phosphoribosyltransferase related [Medicago truncatula] (GB:ABE93547.1); contains InterPro domain Nicotinate phosphoribosyltransferase related; (InterPro:IPR006405); contains InterPro domain Nicotinate phosphoribosyltransferase and related; (InterPro:IPR007229) -0.455760249545216 -4.01587231868158 0.00207447011257018 1 4.18476241720237 14.3498417502853 -0.455760249545216 0.131054864016950
AT3G55410_at 8.85121538113455 8.93225333347461 9.15788795041376 9.01805959472648 8.79546477818702 8.53224947220633 8.82554266815307 8.59950953361202 7.46739624693824 7.81944458384385 8.51395622142847 8.6503869502645 8.1381841788343 8.25281214327735 8.42144724751623 8.52355166769987 8.30840535098217 8.09834448215175 7.8458987565258 0.133454916743440 0.133831261312291 0.126341047822297 0.140574706955386 0.129009451414414 0.131031322363346 0.130190894711154 0.136499777478908 0.141964469935636 0.138303218890591 0.128648321265406 0.131847434223999 0.134673099763181 0.136794935685196 0.129858739641844 0.126155839694570 0.131144934116284 0.140917547864279 0.138428451168527 3 3|0 +|/ 20555826 20556627 20556215.2 20552412 20557011 + gene protein_coding_gene FALSE TRUE AT3G55410.1 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative similar to 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G65750.1); similar to oxoglutarate dehydrogenase (succinyl-transferring) [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_568841.1); similar to Predicted 2-oxoglutarate dehydrogenase, E1 subunit (ISS) [Ostreococcus tauri] (GB:CAL52875.1); similar to hypothetical protein DDBDRAFT_0219311 [Dictyostelium discoideum AX4] (GB:XP_636906.1); contains InterPro domain 2-oxoglutarate dehydrogenase, E1 component; (InterPro:IPR011603); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) 0.363129027144935 4.01527137078569 0.00207658634996898 1 4.18387311679762 16.8761724520078 0.363129027144935 0.0662355041304312
AT3G25660_at 8.32996192612083 8.3350054348124 7.53273559413019 7.48973116135054 8.23880031375888 7.76465015210931 8.89036304838221 8.69817251924844 8.71313067111783 8.92155017698384 8.78697546430775 9.1943219760605 8.44726303294702 8.86550186305487 9.48039091943197 9.05165288786012 8.3417132852607 8.86542176542976 8.9259328275003 0.126715339400830 0.129324892530578 0.140254145944207 0.143823701992727 0.127863681025451 0.135401097249168 0.127993207038177 0.132830022888521 0.135265724116174 0.126887852235378 0.128609263178873 0.122512596495486 0.129996213536822 0.126183230338941 0.129665352720377 0.125239351198062 0.132723719500681 0.126864162307776 0.122512596495486 3 3 - 9340886 9341841 9341388.636 9340678 9343441 - gene protein_coding_gene FALSE TRUE AT3G25660.1 glutamyl-tRNA(Gln) amidotransferase, putative similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G64440.1); similar to OSJNBa0033G05.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD41903.2); similar to H0306F03.6 [Oryza sativa (indica cultivar-group)] (GB:CAH68239.1); similar to Os04g0643200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054049.1); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase A subunit; (InterPro:IPR004412); contains InterPro domain Amidase; (InterPro:IPR000120) -0.390639584688488 -4.01455267567217 0.00207912018604569 1 4.18280950279029 17.0262740393198 -0.390639584688488 0.088854831356141
AT3G17810_at 9.7678047607535 9.85716011776867 10.0784615096929 10.2775887537513 10.1803729566568 9.47871653670274 9.4154753129635 9.29760334225609 8.77709360821246 8.52735492630685 8.98384172233163 8.80404086549718 9.17641272185462 9.15573171106648 8.7487967354783 9.23986057589832 9.23685678774591 9.25184519824703 8.46827843280597 0.105608932084138 0.105500082531821 0.110876511640650 0.106906365113236 0.105500082531821 0.110182401756182 0.108616074472848 0.105500082531821 0.121854151439400 0.112125120656868 0.110361059985752 0.106799728943188 0.108668828656417 0.113178358009626 0.119980259606989 0.105500082531821 0.107069439009513 0.107943277585563 0.112864427229524 3 0|3 /|+ 6095541 6096138 6095800.444 6094104 6096572 + gene protein_coding_gene FALSE TRUE AT3G17810.1 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein similar to senescencs-related protein [Pyrus pyrifolia] (GB:BAA86060.1); similar to putative dehydrogenase [Lycopersicon esculentum] (GB:AAN64920.1); similar to Dihydroorotate dehydrogenase 1 [Medicago truncatula] (GB:ABE80190.1); contains InterPro domain Dihydroorotate dehydrogenase; (InterPro:IPR001295); contains InterPro domain Dihydroorotate dehydrogenase 1; (InterPro:IPR005720) 0.451519178210997 4.01235235903834 0.00208689766992180 1 4.17955274294619 18.6269390507549 0.451519178210997 0.128789365759695
AT1G05160_at 5.43515658426201 5.13320487093904 4.50172493740915 4.46521678100475 5.10477674285629 4.86402913721612 4.85458672237602 4.48865659730826 4.68637359178203 4.27277432750975 4.0936139685442 4.01565176560737 4.05906908201799 4.30158817895397 3.50591370781783 4.21593156280825 3.75969039701521 3.95259848953657 4.64224901024796 0.195485155949363 0.192202895336841 0.195283832636520 0.195326954206505 0.188643470453627 0.194899155780354 0.194749935049297 0.200891854344904 0.20865584649135 0.188643470453627 0.192223669683486 0.191238630152925 0.19039230755347 0.191197904079522 0.209895225043434 0.188643470453627 0.203064116796935 0.201547927944331 0.189224138483487 1 1 - 1487669 1488623 1488109.727 1487377 1490946 - gene protein_coding_gene FALSE TRUE AT1G05160.1 CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1); oxygen binding Encodes an ent-kaurenoic acid hydroxylase, a member of the CYP88A cytochrome p450 family. Identical to Ent-kaurenoic acid oxidase 1 (EC 1.14.13.79) (AtKAO1) (Cytochrome P450 88A3) (KAO1) [Arabidopsis Thaliana] (GB:O23051;GB:Q9C5Y3); similar to KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G32440.1); similar to ent-kaurenoic acid oxidase [Cucurbita maxima] (GB:AAG41777.1); similar to ent-kaurenoic acid oxidase [Pisum sativum] (GB:AAO23064.1); similar to ent-kaurenoic acid oxidase [Pisum sativum] (GB:AAO23063.1); contains InterPro domain B-class P450; (InterPro:IPR002397); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.394878063287664 -4.01004474763145 0.00209508695972238 1 4.17613643006458 9.11682210694691 -0.394878063287664 0.0922840583334592
AT3G56070_at 5.76396536054866 6.54590123476116 5.38029806404183 5.29282910998332 5.16612794844549 4.99861549869848 6.09688274247986 6.52772545048427 4.18497604768086 4.80011847818077 4.29296393101131 5.22328795561964 4.50004926134302 4.1302604192703 5.08253009353346 4.71579345417994 4.67574810171442 4.40704940111762 4.84558210122932 0.264788491140767 0.259204431296093 0.255547336278208 0.256845592257851 0.253671295800218 0.254334372588618 0.26021483418649 0.257220220893838 0.263844891759503 0.264878637610621 0.256438992559854 0.261254820990020 0.253241164500482 0.258219762906611 0.267764476045143 0.252432226157562 0.26402662353414 0.259107870136529 0.25381526594195 3 3 - 20817969 20818457 20818232.727 20817728 20819122 - gene protein_coding_gene FALSE TRUE AT3G56070.1|AT3G56070.2 ROC2 (rotamase CyP 2); peptidyl-prolyl cis-trans isomerase|ROC2 (rotamase CyP 2) rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-3 (EC 5.2.1.8) (PPIase CYP19-3) (Rotamase cyclophilin-2) (Cyclophilin of 19 kDa 3) (Cyclophilin-4) (CYP19-3) [Arabidopsis Thaliana] (GB:Q38867;GB:Q38901;GB:Q9LYN4); similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to cyclophilin (GB:AAA74096.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.502958128458074 -4.00969627953013 0.00209632651374747 1 4.17562047300182 10.3408861109741 -0.502958128458074 0.157922255360115
AT3G44330_at 6.24451578886981 6.6953143079289 5.87674334060838 5.92504786078259 6.5307429977155 6.11447103269465 6.40253146266125 6.36676316863009 6.15797451386818 5.82221034099306 5.37337694189415 5.99238635756878 4.93810366225973 5.31574686301503 5.84603687126851 5.24925922484195 5.43745886227657 5.27420652640414 5.85230205217615 0.23021780092649 0.213241212197049 0.239917687537225 0.218960395033251 0.217021432541349 0.219625985876706 0.220193697430564 0.218060915151349 0.235888694057899 0.21435596348886 0.228549885587287 0.213241212197049 0.22437366405496 0.219316678368228 0.235464417361438 0.216702595781049 0.229470362446326 0.221495427666953 0.220389760800824 3 3|0 +|/ 16020509 16021606 16021153.3 16017662 16021952 + gene protein_coding_gene FALSE TRUE AT3G44330.1 similar to PREDICTED: similar to nicalin [Tribolium castaneum] (GB:XP_971811.1); similar to Os08g0102100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060766.1); contains InterPro domain Nicastrin; (InterPro:IPR008710) -0.415685131363459 -4.00907038967836 0.00209855481675148 1 4.17469370972719 11.9557583530048 -0.415685131363459 0.106694109082008
AT1G34630_at 5.14129685466677 4.96593530349062 5.42806991737447 5.14029100175686 5.95786826576578 5.634185499258 5.42275075329325 5.02814574220317 6.13657297406102 5.70724083168221 5.34650949423474 4.34828579476455 4.56472586880298 5.04240874462184 4.60756934937872 4.29516784482083 4.81622096139343 4.52766481945229 5.924018639973 0.206428716729154 0.196879320154417 0.193303160711717 0.198511266616494 0.201483228604107 0.197391268631028 0.206018775663479 0.203313244898421 0.222107982459343 0.195611194460453 0.196301242541366 0.201935604903622 0.203671003490354 0.203839060170947 0.205750970369729 0.193469561047612 0.217638170809289 0.196411956322773 0.200787245487619 1 1|0 +|/ 12686349 12687353 12686926.111 12685178 12687619 + gene protein_coding_gene FALSE TRUE AT1G34630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51150.1); similar to Os03g0190900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049229.1); similar to Acyl-CoA-binding protein (ISS) [Ostreococcus tauri] (GB:CAL54448.1) -0.414235098964874 -4.00754431328419 0.00210399832048922 1 4.17243379447458 10.6479078796873 -0.414235098964874 0.105839873885693
AT2G32600_at 7.28932164590615 7.43820108558596 7.08162125340836 7.64053333339894 7.70582891834861 7.81016407311865 6.4875574729783 6.54284950168443 5.15115965105349 5.39063056690095 5.66488015975378 5.18305468198966 5.79254930800556 5.2813839054232 5.30578370440599 5.70096424818669 5.78243981462698 5.05633384288931 5.27869970810748 0.282045941494868 0.278366892058665 0.289026763652666 0.283811956880744 0.278480166952529 0.287838725874561 0.288348065413849 0.288624607067909 0.286485610454605 0.290395361964363 0.283674616720054 0.286243443319130 0.286618934248866 0.286399480534130 0.289557775925688 0.281671300840372 0.279810569639308 0.302364232843546 0.283650877201330 2 2|0 -|/ 13840870 13842060 13841351.9 13840622 13842740 - gene protein_coding_gene FALSE TRUE AT2G32600.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G61080.1); similar to Os03g0263500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049634.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06858.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690) 0.408740767084715 4.00751791036087 0.00210409262878787 1 4.17239469235287 12.6217198356441 0.408740767084715 0.102159553865946
AT1G80830_at 8.89444847820098 9.18636972379392 9.84695631033202 9.72990894981616 9.64477948143896 9.34030167977257 9.18755796444016 9.27795028715268 8.05926477970805 8.99575414276322 8.88282140789257 7.39117479465189 8.61491674282844 8.4527478339642 7.50976496809903 8.72075202679622 9.21275127113285 9.34858918646407 7.75554912557038 0.134255343287335 0.123494619045085 0.138822084188319 0.136623694120656 0.128873043193269 0.138440765782234 0.135491974292874 0.129659834760894 0.151962091483368 0.125427171164424 0.129530472435812 0.144900408737168 0.125959810465729 0.129175578087354 0.141994413514836 0.131285309896291 0.129506810270537 0.126163511836991 0.138943478434161 1 1|0 -|/ 30377962 30378651 30378319.444 30377771 30380588 - gene protein_coding_gene FALSE TRUE AT1G80830.1 NRAMP1 (NRAMP metal ion transporter 1); manganese ion transporter/ metal ion transporter Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. Identical to Metal transporter Nramp1 (AtNramp1) (NRAMP1) [Arabidopsis Thaliana] (GB:Q9SAH8;GB:Q8LCS7;GB:Q9SP94); similar to NRAMP6 (NRAMP metal ion transporter 6), metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G15960.1); similar to NRAMP family metal transporter [Chen (GB:BAE48710.1); similar to Os06g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058349.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) 0.375202710787219 4.00749901252531 0.00210416013245187 1 4.17236670503242 17.7819736735314 0.375202710787219 0.0773528411722674
AT3G02450_at 7.01303214332946 7.44968703067429 6.97702069075107 6.81422422553257 7.56162878255055 6.6666654985558 7.89926793831906 7.71223065517346 7.52960170104327 7.67171531279897 6.85942277032593 7.45522863679872 6.87519728060288 7.18944638758942 7.02909228774408 7.11885058227617 6.55994101626465 6.51095824856336 7.34712114019263 0.198931431736487 0.188856544264892 0.191370428983217 0.192085572237710 0.197642925863574 0.198712142889942 0.194794169911528 0.194687728280207 0.195270640642087 0.185484556316826 0.189399280536381 0.181449022317283 0.181449022317283 0.184639193819871 0.195841762929453 0.191005282934001 0.198850728201054 0.203498160494122 0.184118057786367 3 3 - 502888 503665 503302.091 502714 505237 - gene protein_coding_gene FALSE TRUE AT3G02450.1 cell division protein ftsH, putative similar to ATFTSH6/FTSH6 (FtsH protease 6), ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15250.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96869.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.540024271300438 -4.00733903395388 0.00210473167128474 1 4.1721297778966 14.4946762219186 -0.540024271300438 0.177590885287043
AT1G47720_at 3.50650909134293 3.55794276605328 3.67525706277567 3.44856400563488 4.09114068587819 4.24392165680592 3.52985858388218 3.24968605192105 2.51333752927748 2.63555783760407 3.03087963378552 3.02101521876496 2.88934949713604 2.47548164424403 2.8509067107746 3.33893516537933 3.48536863374906 2.92323298355396 2.87980905410039 0.204616319224819 0.205244319425268 0.214789106026957 0.203894293016987 0.215413056840447 0.214130777201969 0.205647420888731 0.208862760381685 0.212371509779826 0.214057786679941 0.213031699045331 0.205205493552875 0.229566070259681 0.207955213264404 0.209406258629914 0.203894293016987 0.211584457281573 0.203894293016987 0.214943254109090 1 1 - 17563965 17565046 17564524.4 17563795 17565323 - gene protein_coding_gene FALSE TRUE AT1G47720.1 OSB1 (ORGANELLAR SINGLE-STRANDED); single-stranded DNA binding Encodes an organellar single-strand DNA binding protein, located in mitochondria, controls the stoichiometry of alternative mitochondrial DNA forms generated by homologous recombination. similar to PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9), single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G20010.1); similar to Single-strand binding protein family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97593.1); similar to Os03g0633900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Single-stranded DNA binding; (InterPro:IPR010913); contains InterPro domain Single-strand binding protein/Primosomal replication protein n; (InterPro:IPR000424) 0.364691554201632 4.00732626343347 0.00210477730216210 1 4.17211086468887 6.50192548449547 0.364691554201632 0.0683234711116438
AT1G12900_at 12.8660812685590 12.9783149378061 12.5219199649103 12.466578974347 12.4064173099911 12.4046835527561 13.5780957763840 13.6939195565264 13.8802886955346 13.8323573750167 14.08427411963 14.2385781257482 13.7743295745687 13.9669485788139 13.9967172629486 13.9382152625392 13.5340379089735 14.019945330203 13.6270075920751 0.064803458549775 0.0633892798095491 0.0681581178200951 0.0644025668762753 0.0635460246590313 0.0677867856380104 0.0645813150795929 0.065363512641796 0.0685670500802392 0.0656420460584499 0.0667934646906394 0.0640000342443963 0.0634888824288556 0.066796112969153 0.072162580921632 0.0633892798095491 0.0670767352696236 0.0658070520032656 0.0663175726882052 1 1 - 4392653 4393273 4392948 4392448 4394398 - gene protein_coding_gene FALSE TRUE AT1G12900.1|AT1G12900.2 GAPA-2; glyceraldehyde-3-phosphate dehydrogenase|GAPA-2 similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] (GB:ABA86963.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P19866); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P12858); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173)|similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P19866); similar to Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp (GB:1RM3); similar to Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3-Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad (GB:1NBO); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) -0.332478359049190 -4.00657498153285 0.00210746355202741 1 4.17099817138394 26.7265090799785 -0.332478359049190 0.0295093347105577
AT3G54750_at 3.17401513690091 3.38674198206253 3.1134951754726 2.94767157214384 2.71972732025148 2.50542792358091 4.07960182678161 3.78687714838142 3.77864033126025 4.17767434582246 3.94774090276973 4.24454115463313 3.67128752996635 3.92877685640549 5.10488519699358 3.53631301109368 3.30602595659143 3.71932588796079 3.74163292714153 0.21623189399195 0.208850236980554 0.211325474567031 0.212137418499714 0.216846485652891 0.218071920135646 0.221504015187231 0.219987564131976 0.213832726537198 0.2103557749368 0.211225632848318 0.209980355710787 0.216385012060191 0.208131973304457 0.220044756684494 0.20854139412116 0.213258677924779 0.212555720579642 0.219408850677904 3 0|3 /|- 20275821 20276620 20276110 20275683 20279772 - gene protein_coding_gene FALSE TRUE AT3G54750.1|AT3G54750.2 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52683.1); similar to Os12g0621700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067304.1); contains domain FAMILY NOT NAMED (PTHR12972); contains domain SUBFAMILY NOT NAMED (PTHR12972:SF3) -0.376091165846193 -4.00551852124931 0.00211124702359294 1 4.16943335476183 7.13003372576017 -0.376091165846193 0.0782318384235089
AT2G45730_at 5.78067921335843 5.78617797612477 5.04880076900863 5.34554052395454 5.70977951545098 5.10972960434611 6.49638974629441 6.19723675070245 5.25948365876947 5.19769677318276 4.92901561491184 5.30091832705043 5.33372574490644 5.27763275691136 5.25647413907707 5.57491869573543 5.03639131155463 4.84033200318178 5.52341820237404 0.186905372341839 0.185531950604130 0.183765471776352 0.188139472094324 0.190235597270236 0.201262883841051 0.190506089483516 0.193825891767139 0.189102858210484 0.18900305576411 0.188525116898194 0.191192622311778 0.189812928860368 0.189061354543397 0.187481399070203 0.182938641188875 0.195898976531914 0.189864175553287 0.18179937992986 2 2|0 -|/ 18843593 18844533 18843955.222 18843338 18846234 - gene protein_coding_gene FALSE TRUE AT2G45730.1 eukaryotic initiation factor 3 gamma subunit family protein similar to tRNA(1-methyladenosine) methyltransferase, subunit GCD10 (ISS) [Ostreococcus tauri] (GB:CAL54124.1); similar to OSIGBa0127D24.9 [Oryza sativa (indica cultivar-group)] (GB:CAH65746.1); similar to Os04g0112300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052037.1); contains InterPro domain Eukaryotic initiation factor 3, gamma subunit; (InterPro:IPR007316) -0.447424227852957 -4.00428591333226 0.00211567026693368 1 4.16760742960616 10.9445629052091 -0.447424227852957 0.126890156988508
AT4G23060_at 7.38132504957733 7.49927610772845 6.32803001017152 6.24796095371789 8.56646672953823 8.48449938185464 6.80808478942146 6.78929022423415 8.27909999766027 7.46394906790175 8.67929303849117 8.63910713886473 7.65286935561646 7.81719325327191 8.96190471920585 8.48296497409875 7.40904021398712 7.36840587967073 7.50692761558295 0.161109886353225 0.164197185122753 0.166795344699118 0.174008045910836 0.165393388419479 0.175900938434056 0.170636602839862 0.168034911813377 0.163744266427025 0.166067885169177 0.161195374353632 0.160736438417757 0.169890470648234 0.168583856373715 0.166383398829915 0.160736438417757 0.182137189099139 0.177115624394378 0.165976360261898 4 4 + 12089822 12090353 12090124.455 12087214 12090586 + gene protein_coding_gene FALSE TRUE AT4G23060.1 IQD22 (IQ-domain 22); calmodulin binding similar to IQD23 (IQ-domain 23), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G62070.1); similar to Os04g0569900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053598.1); similar to IQ calmodulin-binding re (GB:ABE86306.1); similar to OSIGBa0139P06.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67037.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.331800160341372 4.00378839054086 0.00211745837124926 1 4.1668703624414 15.2012864301300 0.331800160341372 0.0286432328396684
AT3G54120_at 1.25634819690912 1.5934861363473 1.68723029448496 1.67712571301494 1.94585764256399 1.82182183643660 1.619703940145 1.67742899901796 1.73038064575937 1.70789884829340 2.64454239351739 2.59155600261294 2.01427424918774 2.64456958137923 2.4044944096612 2.04794615651914 1.87175116537037 2.19943835280845 2.05757218271164 0.210862672166343 0.213367553935376 0.217664399709830 0.214966827066153 0.215252876693854 0.215563049670605 0.214947625084996 0.219667718823809 0.221677182038741 0.210862672166343 0.216190526641244 0.210862672166343 0.216547576100648 0.213549785049281 0.22194667755465 0.212281031373906 0.221394830954271 0.221466611626605 0.214896919387157 3 3|0 -|/ 20052281 20052835 20052560.3 20052104 20053318 - gene protein_coding_gene FALSE TRUE AT3G54120.1 reticulon family protein (RTNLB12) similar to reticulon family protein (RTNLB11) [Arabidopsis thaliana] (TAIR:AT3G19460.1); similar to Os04g0670000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054209.1); similar to H0818H01.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86090.1); similar to Os04g0367400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052556.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.358319016740432 3.9999840423794 0.00213118336740875 1 4.16123315630651 3.72701139376675 0.358319016740432 0.0629883690195004
AT3G62300_at 4.64518363504652 4.93872351371221 4.900334846729 4.99652593277416 5.77145799339048 5.5008781196559 5.14150664567243 5.11419902412056 4.73283098460962 4.44345085653836 5.34324151794944 5.46860892714826 4.77749206404844 5.47651778612594 5.3568277076504 5.24369342218495 4.34275044122462 4.80582129630419 4.92303718629094 0.231183928318625 0.230484711630848 0.234340524955468 0.231710898358022 0.230447228532753 0.238090208245551 0.235727701984047 0.231019237025699 0.239517482796866 0.238954350844588 0.234383009675029 0.230595801328108 0.235827982882623 0.234904736255906 0.235536510854411 0.229661996379599 0.249116191553244 0.242305189111172 0.233352929910724 3 3 + 23067463 23068020 23067724.364 23065079 23068163 + gene protein_coding_gene FALSE TRUE AT3G62300.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G47230.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) 0.367246077341341 3.99965877327374 0.00213236113412319 1 4.16075108378046 10.0269222911256 0.367246077341341 0.071221520919596
AT1G22550_at 2.88331050862307 2.93074481614083 2.13982312626340 2.36851834112888 2.8979922718779 2.84185836573294 2.71268248961502 2.85208239568994 2.18213007574144 2.24219914416926 3.42230969730326 3.46970458098341 3.38579189997636 3.45119917494895 3.42576998920933 3.29621320662574 2.53162550521962 2.67374019937867 2.2829587971055 0.210163065514841 0.204558842797768 0.21836746473991 0.205440834004364 0.203802143194997 0.214180009249655 0.20553430767613 0.215800880292208 0.217473424420503 0.213734591633166 0.204918049136491 0.203858114143996 0.202697210463641 0.207061193264917 0.205189050237822 0.202697210463641 0.215019700654558 0.202697210463641 0.205458790340164 1 1 - 7966668 7967143 7966904.545 7966522 7968630 - gene protein_coding_gene FALSE TRUE AT1G22550.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G22570.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72120.1); similar to Os01g0871600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044939.1); similar to putative oligopeptide transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD81723.1); similar to OSJNBb0008G24.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB86548.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.344312291550252 3.99842250932814 0.00213684370581937 1 4.15891871358766 5.4247800164062 0.344312291550252 0.0480627556545467
AT3G14240_at 7.97357333053304 8.21806731687126 5.38794758980025 5.58283506578773 6.89941251697104 7.19409861105945 6.89755134735821 7.24862732220691 8.26548160531932 7.55335667398596 8.92787678056586 9.03730196138075 8.10042385951836 8.79769616906498 9.25923740692502 8.05071571238992 7.19969159897975 8.53841934888566 8.08591260741066 0.144053706388654 0.146947043585696 0.151291202401939 0.159499681500175 0.152775457411242 0.147573679361624 0.147293960952018 0.146916609296263 0.148728598609675 0.143608140500461 0.138034531601918 0.138351849041038 0.142851420621936 0.143502739485500 0.140471316273958 0.139340368163905 0.149764512073798 0.143533155704075 0.140884201320271 3 3 - 4741661 4742219 4741960.727 4741480 4744124 - gene protein_coding_gene FALSE TRUE AT3G14240.1 subtilase family protein similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis thaliana] (TAIR:AT4G34980.1); similar to subtilisin proteinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94911.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.398855662097962 -3.99750446240049 0.00214017879916324 1 4.15755785925354 15.1538494627164 -0.398855662097962 0.0960184678132154
AT3G03870_at 8.54599327769739 8.69193889417319 9.18816268109887 9.32252531057975 10.1072727942470 9.66600105787494 8.73114438717033 8.62516473858008 8.45225262089772 8.01527683517913 8.42746314920412 7.49101551631256 8.85069056244878 8.3606702959312 7.0041973778331 8.53796939458354 8.55326841511466 8.1358372889049 8.50241646355127 0.162640713824686 0.157673098455532 0.163086578585982 0.164069572187723 0.166217028401604 0.162856861086360 0.160138194216656 0.15705005221367 0.159936447934629 0.161429541769865 0.156606125719256 0.16198246056182 0.158431718837468 0.161928414866613 0.177465050177492 0.159289300369047 0.165033952732255 0.167825615830040 0.160757924039794 3 3 + 995757 997129 996028.727 995224 997417 + gene protein_coding_gene FALSE TRUE AT3G03870.1|AT3G03870.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18130.2); similar to hypothetical protein MtrDRAFT_AC156827g15v1 [Medicago truncatula] (GB:ABE86405.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18130.1); similar to hypothetical protein MtrDRAFT_AC156827g15v1 [Medicago truncatula] (GB:ABE86405.1) 0.384626915021894 3.99555559192868 0.00214727665262721 1 4.15466858191715 17.3565025459698 0.384626915021894 0.0857111414271875
AT1G52300_at 11.5011742893692 11.5877725212792 11.0793892660856 11.1409618290559 11.1909092301018 10.9663013425543 11.6568961833449 11.6913497851206 11.4361265702091 11.5264203232838 11.4089535941115 11.7295296225528 11.1368781562040 11.3263165617792 11.8065721121387 11.0739172944249 10.9976140477092 11.13854084472 11.5170086143598 0.07710820774896 0.0726459410539398 0.0720261485996816 0.07420898107039 0.07504367610293 0.0753959456805378 0.071174421261353 0.0738403343024937 0.0742178117969278 0.0708155492435956 0.0723179556435013 0.0708155492435956 0.0715389356255913 0.0716684894726077 0.0730639344086802 0.0716202309132964 0.0714040713143519 0.072265903064759 0.0732433747334355 1 1|0 -|/ 19478882 19479646 19479085.2 19478567 19479903 - gene protein_coding_gene FALSE TRUE AT1G52300.1 60S ribosomal protein L37 (RPL37B) Identical to 60S ribosomal protein L37-2 (RPL37B) [Arabidopsis Thaliana] (GB:Q43292;GB:Q9C822); similar to 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana] (TAIR:AT3G16080.1); similar to ribosomal protein L37 [Glycine max] (GB:AAS47512.1); contains InterPro domain Ribosomal protein L37e; (InterPro:IPR001569) -0.340401333954117 -3.99537113143165 0.00214794973212646 1 4.15439508409403 22.7620820301086 -0.340401333954117 0.0434109230206653
AT1G78150_at 8.29073657279275 8.11498340045366 8.04245765254195 8.10319936104367 8.27747023478877 8.49894390254931 7.06293856833181 7.42057332468578 7.79773501592787 7.53369638396964 8.17083759470665 8.28191487342944 7.99490548778576 8.15046526254388 8.11219537991713 8.3037529190471 7.53864132819759 7.50519150919966 7.95488828259571 0.157301280278472 0.151466862899636 0.150732208293287 0.158232891067364 0.150659794532555 0.159146963909086 0.149822355975179 0.159085541201496 0.162437081709925 0.161765700219095 0.153843452829648 0.15419318301643 0.174316473916975 0.157242742976189 0.172358900240194 0.149822355975179 0.158905828894924 0.155977321398584 0.159062332579501 1 1 + 29410519 29411173 29410777.222 29409541 29411645 + gene protein_coding_gene FALSE TRUE AT1G78150.1|AT1G78150.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35780.1); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os07g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060324.1); similar to Os02g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047207.1) 0.376670652343626 3.9938507510419 0.00215350583185382 1 4.15214064716058 15.8610851797407 0.376670652343626 0.0795923415140111
AT4G31860_at 7.59473510463287 7.5598707893882 8.46247969314167 8.29497115541547 8.51883663962944 7.94425119866162 7.52063323064501 7.31846574798366 6.8329095242561 6.81029836973666 7.05501609706316 6.5746706832435 6.62287639331014 6.97170040080733 6.59676234427751 7.25907055633675 7.17680767967862 6.76464970387532 6.89981892952398 0.183015847550062 0.170010743281634 0.183768553649910 0.187186940143752 0.179967384785851 0.186302098538745 0.174358318070274 0.170010743281634 0.172862243045784 0.174277884372986 0.179219073205370 0.180227838359420 0.177105262071441 0.181952517130390 0.173990870417178 0.1715046477655 0.174490114458153 0.176021522564300 0.170177255861177 4 4|0 -|/ 15406749 15407683 15407086.778 15406445 15409006 - gene protein_coding_gene FALSE TRUE AT4G31860.1|AT4G31860.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G25070.1); similar to protein phosphatase type-2C [Zea mays] (GB:AAG43835.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to Os02g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046088.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G25070.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to putative protein phosphatase type-2C [Oryza sativa (japonica cultivar-group)] (GB:BAD38121.1); similar to Os02g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046088.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.418363539017371 3.99384634835561 0.00215352194279507 1 4.15213411833356 14.7644653650187 0.418363539017371 0.109489697397798
AT1G06080_at 2.338237410484 2.58320070865134 1.30448059490901 1.44423990895356 1.24581304169890 1.13978212060854 1.34457749496886 0.99692173737193 5.19783060467564 2.28635772158370 5.22643530603194 6.73614094058837 3.72715540390914 1.87588231422421 7.98326900112078 3.14426951079305 1.76408667521030 2.74490383606498 5.62965708096012 0.320371759404393 0.318772689376058 0.318772689376058 0.318772689376058 0.326610475443434 0.318772689376058 0.318772689376058 0.319333445082008 0.325322356694669 0.322300381190661 0.322694270816714 0.33725108276699 0.319694701083752 0.318772689376058 0.346922787743772 0.318772689376058 0.323276663782845 0.326362594981311 0.343768583539148 1 1 + 1844728 1846051 1845351 1843567 1846301 + gene protein_coding_gene FALSE TRUE AT1G06080.1 ADS1 (DELTA 9 DESATURASE 1); oxidoreductase homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression down-regulated by cold temperature. Identical to Delta-9 acyl-lipid desaturase 1 (EC 1.14.19.-) (ADS1) [Arabidopsis Thaliana] (GB:O65797;GB:Q8GW15); similar to ADS2 (16:0DELTA9 ARABIDOPSIS DESATURASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G31360.1); similar to desaturase delta 9 [Picea glauca] (GB:AAM12238.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Acyl-CoA desaturase; (InterPro:IPR012196) -0.376584675120083 -3.99265541997571 0.00215788456829711 1 4.15036796740144 5.81043146515544 -0.376584675120083 0.079613941560735
AT1G78660_at 7.0595950536271 7.04270768371307 6.46590728717844 6.98814439966337 7.58582565707623 7.04971882620727 6.69139561313183 5.97243437915231 5.21133522202373 6.02942727953102 6.68938432905996 6.47339234657177 6.29079195746028 6.3706034082333 6.49977490869996 6.83350566067941 6.33425656567036 6.43779413668849 5.97395719057699 0.207139282096903 0.196003701599418 0.196436069611897 0.203352844301809 0.199928306257416 0.197935980960532 0.192498255359425 0.197845738565297 0.210582129203334 0.201663318698999 0.201640827483170 0.193141643834946 0.195325798169005 0.199498363336250 0.195071465070932 0.199962763070281 0.200761341439056 0.202360236827918 0.193684906443727 1 1|0 +|/ 29591520 29592438 29591992.375 29590570 29593193 + gene protein_coding_gene FALSE TRUE AT1G78660.1|AT1G78660.2|AT1G78660.3 ATGGH1; gamma-glutamyl hydrolase The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. similar to ATGGH2 (GAMMA-GLUTAMYL HYDROLASE 2), gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78680.1); similar to Gamma-glutamyl hydrolase precursor (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GB:P93164); similar to Os05g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056052.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.541906938440472 3.99210836294478 0.0021598916371805 1 4.14955661271822 12.9716800182238 0.541906938440472 0.179621452443892
AT1G48560_at 2.87221154581361 3.26057626257880 3.08711270451162 3.24625353063093 3.68314173645065 3.84245715871775 2.79163979503881 2.95879040765758 2.21695825518595 1.99884964334632 2.55295002200932 2.28227782942571 2.446928919591 2.57951036729845 2.10928446755228 2.31030982617672 2.69162572154318 2.28912302852677 2.20541699207459 0.20538541360642 0.211950010089735 0.211454330853511 0.211614225443687 0.206646281646809 0.217646560541862 0.20538541360642 0.209937328192017 0.209106616913609 0.215001893960374 0.20538541360642 0.205649128968175 0.216851360078883 0.213906813984687 0.212809719655504 0.206728226548158 0.212530530010715 0.20538541360642 0.211208971272983 1 1 + 17958269 17958869 17958477.5 17956533 17959004 + gene protein_coding_gene FALSE TRUE AT1G48560.1 similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G27650.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917) 0.380639877851008 3.99185760128399 0.00216081229277852 1 4.14918468736221 5.49185267749216 0.380639877851008 0.082899088358001
AT3G26670_at 5.82869662978728 6.21548390739389 6.23625187300471 6.54188261366759 6.90141137638963 5.45020729749709 5.14267588022702 5.01003656365611 4.92736068748962 4.73519328563988 5.77281317149639 5.53290599915966 4.99779032989516 5.92150882240816 5.12116558230393 5.61344584542327 4.81594436508164 4.85914002359042 4.19970969802902 0.248185456805791 0.238327716161942 0.241457702814580 0.247729291146866 0.234635030452583 0.256493032621245 0.240705138084119 0.239817276151112 0.265564501208865 0.244651257801824 0.234635030452583 0.234635030452583 0.236416468632165 0.239178694044109 0.241545525737066 0.234635030452583 0.252914359654626 0.23658383915311 0.239966370820571 3 3|0 -|/ 9799473 9800325 9799980 9799223 9802330 - gene protein_coding_gene FALSE TRUE AT3G26670.1|AT3G26670.2|AT3G26670.3 similar to permease-related [Arabidopsis thaliana] (TAIR:AT3G23870.1); similar to hypothetical protein ECU03_0170 [Encephalitozoon cuniculi GB-M1] (GB:NP_597528.1); similar to Os02g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046964.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.720899877620337 3.99145280684673 0.00216229933182264 1 4.14858428451145 10.8908776799392 0.720899877620337 0.266223158215102
AT1G76390_at 6.77202391641762 6.724019832215 7.31115527155351 7.55227271801206 6.54365329897287 6.85997963745578 5.50963960998233 5.98073255342001 5.63972645436365 5.22333063590718 5.7203333651245 5.65443183246677 5.31733669216903 5.67576982184845 5.15885823253211 5.77810331587889 5.4613022247449 5.63825523097577 5.76333481395056 0.240316170441021 0.237292744374663 0.250898530061103 0.245458369048835 0.241058804474899 0.252101781293601 0.23830980131537 0.237292744374663 0.239943590473365 0.250916026497358 0.23845840604099 0.238920657487341 0.243688905773878 0.240179993202535 0.240183948682002 0.237292744374663 0.240916368595212 0.242043404060083 0.237292744374663 1 1 + 28662840 28663377 28663084.091 28660284 28663605 + gene protein_coding_gene FALSE TRUE AT1G76390.1|AT1G76390.2 armadillo/beta-catenin repeat family protein / U-box domain-containing protein|binding / ubiquitin-protein ligase similar to armadillo/beta-catenin repeat protein-related / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20780.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50990.1); similar to armadillo/beta-catenin repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97086.1); similar to Os03g0657100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050813.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613); contains InterPro domain HEAT; (InterPro:IPR000357) 0.414289729108453 3.99087751848427 0.00216441452407416 1 4.14773096030347 12.2030243418577 0.414289729108453 0.107019014591505
AT3G14320_at 0.957390974030698 0.924093026320452 0.181970032896341 0.703605516832112 0.241477260289741 0.564599846058589 1.07457633425796 0.964658563091554 0.902094807497846 1.34570060563035 0.909678041980218 1.10118593401652 0.345383890236885 0.80458996930642 0.654346702995146 0.472374370001209 0.411849771175271 0.884848369590212 0.66939239788968 0.208282667785006 0.208455951862589 0.207412076790684 0.209545809806747 0.20892798820528 0.207900383732679 0.217895115302256 0.21413112784897 0.210109263558743 0.212991520729518 0.211388016091511 0.217566812972127 0.217190758167422 0.208574821648111 0.210620647582952 0.213053354146468 0.209843097732466 0.216928286133677 0.212006780867092 3 3 - 4777838 4778288 4778065.273 4777738 4778352 - gene protein_coding_gene FALSE TRUE AT3G14320.1 zinc finger (C3HC4-type RING finger) family protein Identical to Putative RING-H2 finger protein ATL3E (ATL3E) [Arabidopsis Thaliana] (GB:Q9LUL6); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G53820.1); similar to ACRE 132-like protein [Solanum tuberosum] (GB:ABK96800.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.415815183124598 -3.99078084959288 0.0021647701628083 1 4.14758756692135 1.53676047830653 -0.415815183124598 0.108031368571670
AT2G38880_at 6.3035451356077 6.25933248558368 6.40070256169873 6.47020266546196 6.57277980735374 6.39065905250693 6.13827656093916 6.34581528510244 5.73826149741416 5.52244379096092 6.37459275612013 6.40198757211666 6.37075441093538 6.09010665815656 5.87477672092067 6.2641555333739 5.98890525633397 5.48897652338152 5.58097212065723 0.199381831161157 0.213212623550471 0.217197560485100 0.223742149351322 0.207203194971117 0.209172563583189 0.202835370676870 0.209968899129341 0.213741394517818 0.202482067896791 0.201701720289253 0.203910373140439 0.206717711422691 0.214037901824007 0.209488397335373 0.200795713161896 0.215680227290092 0.207725487271541 0.203189674795064 2 2|0 +|/ 16245774 16246742 16245956.125 16245554 16247912 + gene protein_coding_gene FALSE TRUE AT2G38880.1|AT2G38880.2|AT2G38880.3|AT2G38880.4|AT2G38880.5|AT2G38880.6 HAP3A (Heme activator protein (yeast) homolog 3A); transcription factor|HAP3A (Heme activator protein (yeast) homolog 3A) Subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences Identical to Nuclear transcription factor Y subunit B-1 (AtNF-YB-1) (Transcriptional activator HAP3A) (NFYB1) [Arabidopsis Thaliana] (GB:Q9SLG0;GB:O23633); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G53340.1); similar to CAAT-box DNA binding protein subunit B (NF-YB) [Zea mays] (GB:CAA42234.1); similar to Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box DNA-binding protein subunit B) (GB:P25209); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124)|Identical to Nuclear transcription factor Y subunit B-1 (AtNF-YB-1) (Transcriptional activator HAP3A) (NFYB1) [Arabidopsis Thaliana] (GB:Q9SLG0;GB:O23633); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family [Arabidopsis thaliana] (TAIR:AT4G14540.1); similar to CAAT-box DNA binding protein subunit B (NF-YB) [Zea mays] (GB:CAA42234.1); similar to Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box DNA-binding protein subunit B) (GB:P25209); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.344866557093504 3.98746130192718 0.00217701953961666 1 4.14266273000632 12.2205013935792 0.344866557093504 0.0498641674094798
AT4G17740_at 6.90937336672248 6.4612223877834 5.85409321607389 5.76127821713669 6.62594928749532 6.05442228324182 7.178891427718 6.66412506070463 6.81168862441333 7.85726360625618 7.01683073188085 7.57590950935157 6.96902984935207 7.09073977329072 7.25051038944553 7.24575616249507 7.01718535395816 7.09739794555752 7.583401494538 0.224698389588172 0.233089874099202 0.23755801960218 0.244491822255307 0.224698389588172 0.247300211255810 0.224698389588172 0.245974103253861 0.238077055870067 0.228622343894477 0.235187353803433 0.228387433888530 0.235077098873866 0.231734419302366 0.235060851548021 0.224698389588172 0.247265420925376 0.230029772007077 0.230782614267765 4 4|0 -|/ 9867128 9868031 9867454.556 9866990 9869765 - gene protein_coding_gene FALSE TRUE AT4G17740.1|AT4G17740.2 C-terminal processing protease, putative similar to peptidase S41 family protein [Arabidopsis thaliana] (TAIR:AT3G57680.1); similar to C-terminal processing protease, putative [Brassica oleracea] (GB:ABD65160.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S41; (InterPro:IPR005151); contains InterPro domain Peptidase S41A, C-terminal protease; (InterPro:IPR004447) -0.494499293532299 -3.98669215200521 0.00217986803839569 1 4.141521407622 13.7263550089357 -0.494499293532299 0.154889381825143
AT3G14080_at 5.96516241312612 5.82906268658016 5.89268132123871 6.0071079353437 6.29942568124026 6.11909586687528 5.96048011140457 5.7360612890019 5.77576206020704 4.92025386231118 5.78881983612284 5.73987201440343 5.6358765354526 6.25732177743847 6.2925382582708 5.95882084637207 6.17196108134711 6.08535240746654 5.78244572582317 0.20199476014851 0.200731893259275 0.197650349715369 0.198160370601680 0.211286028651799 0.195063354248525 0.196932829232965 0.205871821008351 0.220106274309651 0.200965105046896 0.20079964135353 0.195063354248525 0.202946084169825 0.195956829426987 0.202501981681895 0.195629548014904 0.203902739338261 0.199668042756628 0.196433210473318 3 3|0 +|/ 4667724 4668771 4668399.222 4667372 4669201 + gene protein_coding_gene FALSE TRUE AT3G14080.1|AT3G14080.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G19120.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE78228.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.352692935654199 3.98666116728241 0.00217998286961731 1 4.14147542841774 11.7182051101295 0.352692935654199 0.0585577796669693
AT3G02460_at 6.49105528197162 6.41555518925168 6.73097018510151 6.53304974304218 7.42841658762314 6.99846221239846 6.75446925177781 6.39906517941484 6.05970177497928 6.23708152646686 7.05749868140534 6.64033776897927 6.42941634467332 6.68926690627615 6.04420106376073 6.60213763458369 6.53919668893357 6.3202486308903 6.0986869172068 0.197259600103447 0.193662073748348 0.19875544635627 0.196371757070258 0.204540914396197 0.199485414468612 0.205447124091284 0.206400517468059 0.211406283986521 0.203031551468577 0.196120798036744 0.198060007376606 0.195828624072615 0.199110001581521 0.197194371326361 0.193615177962074 0.212212956579588 0.199896757952913 0.196504936628404 3 3|0 +|/ 506880 508072 507459.778 505441 508435 + gene protein_coding_gene FALSE TRUE AT3G02460.1|AT3G02460.2 plant adhesion molecule, putative similar to PAM1 (PLANT ADHESION MOLECULE 1), RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT5G15930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96952.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.408076507578742 3.98510605469877 0.00218575430254296 1 4.13916757423348 13.0549361394004 0.408076507578742 0.103260948589027
AT4G39640_at 8.30960716736318 8.22217756286479 7.77300646332144 7.7951973208876 8.31563638248663 8.0495779440974 8.7748417606925 8.88771111253785 9.33824074149867 8.91695652640585 9.32778791108277 9.06839304004426 9.28238094978379 9.10952907155513 8.93290539346367 8.92384851648739 8.68511222557296 9.06708489103419 9.27877331624449 0.132716574915085 0.129685586674089 0.139252568887749 0.141526268585817 0.124938538405516 0.134677489198083 0.128505386609805 0.127191286001642 0.141397126527213 0.125357889721368 0.127972747765746 0.125746462209844 0.128611686171963 0.13672131031831 0.131527745051601 0.128246585335259 0.133321880925974 0.13453851612399 0.129281357550918 4 4 + 18402083 18402739 18402436.636 18399949 18402955 + gene protein_coding_gene FALSE TRUE AT4G39640.1|AT4G39640.2 GGT1; gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase|GGT1; gamma-glutamyltransferase The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathion) in the apoplast. similar to gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase [Arabidopsis thaliana] (TAIR:AT4G39650.1); similar to H0523F07.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67025.1); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAC56855.1); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAC45233.1); contains InterPro domain Gamma-glutamyltranspeptidase; (InterPro:IPR000101) -0.346794909002313 -3.98451054277810 0.00218796861225708 1 4.13828371867078 17.3797796865786 -0.346794909002313 0.0523938401116883
AT1G64650_at 7.65594965388733 7.80196467750388 6.52876773975 6.92876520021 6.86866597292792 6.66880791898157 7.98738665889098 8.0338323156276 7.09732877527373 7.10313098441385 7.68129388867267 7.84817149565558 7.60396867502896 7.68306261147774 7.81181223976435 6.88422265983421 6.9696766459719 7.1695407697144 7.074738848291 0.213098820163112 0.212511846465128 0.213658105957203 0.216275116027578 0.211551278303612 0.238135538272880 0.220436022926042 0.223055866661745 0.236175645321787 0.212214378691480 0.213283863800936 0.210900108476504 0.219834638570430 0.218207617729616 0.216044812890958 0.214774712983011 0.231956896432676 0.227939315405562 0.214785646880824 1 1 - 24027478 24028820 24028381.727 24027161 24030084 - gene protein_coding_gene FALSE TRUE AT1G64650.1|AT1G64650.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27720.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49310.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93637.1); similar to Os03g0114800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048746.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27720.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49310.1); similar to Os10g0519600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065080.1); similar to Os03g0114800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048746.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509) -0.378147932285648 -3.98034136048337 0.00220353652500909 1 4.1320944438179 14.583368263518 -0.378147932285648 0.0817980897818241
AT1G07870_at 4.02871166563252 4.38279436253694 5.48211685003532 5.07055618461024 4.96121142994411 4.8095552780369 4.01474444224895 4.00330717055254 3.61881359222948 4.03347479147982 3.75101949402398 3.68344399256910 4.47181017042211 3.8228953940452 2.88586657729795 3.95769855888937 4.06224589322349 3.70483065138605 4.2495294779462 0.208075669471263 0.208075669471263 0.215661830299274 0.219739542918054 0.213997060567515 0.219321339196905 0.212294199467998 0.208075669471263 0.210351774923764 0.211033992831429 0.218966437626695 0.210193351169886 0.214147635613584 0.220728141263549 0.208075669471263 0.213381040671954 0.218765949496663 0.208075669471263 0.211401703787808 1 1|0 -|/ 2429951 2430428 2430165.6 2429696 2432018 - gene protein_coding_gene FALSE TRUE AT1G07870.1 protein kinase family protein Identical to Probable serine/threonine-protein kinase RLCKVII (EC 2.7.11.1) [Arabidopsis Thaliana] (GB:Q9LQQ8); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G28590.1); similar to protein kinase 1 [Populus nigra] (GB:BAA94509.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.399337123172114 3.98030669211778 0.00220366646031135 1 4.13204296735892 8.47399915396668 0.399337123172114 0.0975707819651688
AT1G64860_at 10.9557268004357 11.0097893736606 10.9283739910113 10.8910245680741 11.0739798298974 10.7631683305890 12.0509540790234 11.9360178323882 11.6046367595410 11.5460554229298 11.6336280834296 11.5880994285476 11.2839532749493 11.3178702968066 11.5373038161077 11.2785259689351 11.2207492616895 11.5165846358159 11.5056072498872 0.0709261205290617 0.0703742229644659 0.0718391889206747 0.072059358937087 0.0731394448954567 0.0703742229644659 0.0723341079195689 0.0719086412335849 0.0756915055566325 0.0741347312628961 0.0739749334265176 0.0719734512117358 0.075926791033726 0.0756217121745144 0.0727525260333155 0.0721355523335552 0.0737584744983936 0.077040916786472 0.0738363725906789 1 0|1 /|+ 24103378 24104327 24103724.625 24101616 24104615 + gene protein_coding_gene FALSE TRUE AT1G64860.1 SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcription factor Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to Sig1 [Sinapis alba] (GB:CAA75859.1); similar to sigma factor [Nicotiana tabacum] (GB:BAA88921.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.35199790324242 -3.97983328673213 0.00220544155790467 1 4.13134002627743 22.6882239289206 -0.35199790324242 0.0584637642910067
AT3G62860_at 4.88839670432788 4.76469269343875 5.11269290381122 4.93667480548294 6.62143538660154 6.49115718604208 5.71651836202488 5.72597396666199 3.39932994093161 5.36334104040626 4.60475067163907 4.13986582086169 5.61434442560498 5.2931328754903 3.96667235483636 4.42301328860887 6.00744327458351 4.8170928221901 5.32720995731338 0.218311139878429 0.211278621941782 0.210887290418497 0.215837989499370 0.217111866664312 0.211511674172468 0.212401447691141 0.216056386820458 0.216498106532176 0.217181192267644 0.216807208700502 0.213245039045719 0.212674346365324 0.218282058648126 0.219142317522554 0.220497990102117 0.220117099996866 0.216644485008549 0.2194534815197 3 3 - 23250559 23251117 23250814.455 23250421 23253226 - gene protein_coding_gene FALSE TRUE AT3G62860.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G47630.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.339128550523756 3.97916296483695 0.00220795756557618 1 4.13034463777873 10.3096509616875 0.339128550523756 0.0435557897559656
AT4G36020_at 6.53615922894097 7.1606074592956 7.33823675966875 7.31769974486382 6.5733687819796 6.9142532671129 6.97490701442234 6.87964951646658 6.50618045990228 6.26512534719714 7.25382757069544 7.25906223840785 7.23997427630716 6.50790742881068 7.55177115653833 7.1339945759705 7.21367840777766 6.72890122344132 6.36489199700564 0.163725533102238 0.163180435049529 0.159021125933594 0.167864776759587 0.173492613241919 0.174279884046106 0.160044280282319 0.166595246654895 0.162814437616407 0.169106085259349 0.170619350137734 0.163883742688034 0.160523230254956 0.1807147467889 0.168640401047273 0.158635764829653 0.169509517781925 0.166030706984833 0.163785671036108 4 4 - 17043448 17043963 17043721.727 17043115 17044399 - gene protein_coding_gene FALSE TRUE AT4G36020.1 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); nucleic acid binding similar to cold-shock DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G17870.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); similar to Os02g0121100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.44023292100008 3.97871376213067 0.00220964528837848 1 4.12967756294798 13.7067963271498 0.44023292100008 0.124266454117297
AT1G79680_at 2.80935100774022 3.20912860040089 3.62950596256171 4.13134710684762 2.61499567963195 2.74427920846175 1.27103564987297 1.11193164301473 1.98571795562032 1.40791292512896 1.38646379887622 1.28731699069313 1.20633293487897 0.91198205193019 1.26446205194456 1.18159099254741 1.31490353091683 1.09052264722999 1.19531169024729 0.216800597133406 0.217926242271887 0.22314610558429 0.225511063000062 0.219810893570442 0.219843307468536 0.216475087858488 0.223902681890353 0.221410473443243 0.220231084568779 0.216475087858488 0.220508211663263 0.225563098129405 0.223243292410832 0.216475087858488 0.217157243164694 0.218889511034870 0.221199847490682 0.230741564195716 1 1 - 29985098 29985645 29985387.909 29984866 29987666 - gene protein_coding_gene FALSE TRUE AT1G79680.1 wall-associated kinase, putative Identical to Wall-associated receptor kinase-like 10 precursor (EC 2.7.11.-) (WAKL10) [Arabidopsis Thaliana] (GB:Q8VYA3;GB:Q9MA08); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G19390.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31110.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G69730.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.427734807665095 3.97813181244557 0.00221183375769663 1 4.12881331414938 4.05774405658782 0.427734807665095 0.116564228041739
AT2G21330_at 12.2931856218350 12.5780671070156 12.3101908653337 12.4491122194258 12.1177068030823 12.3511993335961 13.3675909967126 13.6058361666219 13.1271450557026 13.484020600989 13.1422083991739 13.3253639538464 13.1910644125484 12.9865128373814 13.0481017403057 13.4929418376111 13.2567615924579 13.2339174638194 13.3062399350013 0.0700878470948183 0.0690925650430846 0.0700974402699264 0.0724477145512454 0.0696874936732629 0.0707586890123933 0.0717546726858147 0.0705274919098236 0.0719014302705921 0.0716907446958515 0.0728986823069564 0.0690925650430846 0.0698038100814333 0.0766817194621246 0.0719293850998592 0.0690925650430846 0.0772532981551224 0.0707481998343698 0.0716230959479314 2 0|2 /|- 9135563 9136014 9135808.75 9135228 9137321 - gene protein_coding_gene FALSE TRUE AT2G21330.1|AT2G21330.2|AT2G21330.3 fructose-bisphosphate aldolase, putative|fructose-bisphosphate aldolase similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-like protein [Hevea brasiliensis] (GB:AAM46780.1); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741)|similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.2); similar to chloroplast latex aldolase-like protein [Manihot esculenta] (GB:AAV74407.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.375155250970689 -3.97728035936657 0.00221503978065064 1 4.12754874242985 25.8918165859732 -0.375155250970689 0.0796307469332096
AT2G19570_at 5.68558636532036 6.42775570059465 7.6479591584586 7.72706063447783 5.12651597256669 5.73406279340502 5.07332038930532 5.4618506991952 6.2878989625413 5.88326550460532 6.46248247380135 6.35759679244207 5.95019983951397 6.27894671593492 6.07510352681938 7.04252115106567 5.81701983118001 5.97867724886932 6.01710066283158 0.176568511390689 0.1718544966361 0.180934473735171 0.188339884857997 0.180543889172754 0.179528787272526 0.174851170065052 0.186991708302350 0.191643948711058 0.182878450517342 0.180281065809982 0.181067267386462 0.182879740976603 0.184261945774274 0.175611919621499 0.171214025604845 0.183123072290427 0.188108977864818 0.172871887743698 2 2 - 8477738 8478233 8477963.818 8477456 8478726 - gene protein_coding_gene FALSE TRUE AT2G19570.1 CDA1 (CYTIDINE DEAMINASE 1) Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds. similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29610.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) 0.539667377625209 3.97583718999822 0.00222048487181297 1 4.12540512598647 12.2645507095552 0.539667377625209 0.179605506871525
AT2G28320_at 6.24769702196814 6.05798801809255 6.26658755393817 6.17622624549423 6.0724971062315 5.82598927943436 7.21446766078811 6.77636346756977 6.32856755462027 6.55896560994508 6.38965433157015 6.30479886081566 6.30596295758937 6.47470121952422 5.53828977331894 6.61239841360231 6.17916675728627 5.70423599534189 6.57648912311917 0.192114008834346 0.194888116682592 0.194765934168488 0.199807416228108 0.192192284775936 0.192443318358284 0.198403144592944 0.190646571906838 0.209205205392126 0.190646571906838 0.194052145066003 0.198770949622488 0.197759737118543 0.192513347740642 0.203237168789915 0.193321783640628 0.191007801063207 0.220099412649802 0.195070808014734 2 2|0 +|/ 12105264 12106450 12105952.5 12101823 12106721 + gene protein_coding_gene FALSE TRUE AT2G28320.1 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein similar to pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G54800.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK21344.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.394080193213574 -3.97387908320012 0.00222789510016236 1 4.12249617900166 12.6680562781192 -0.394080193213574 0.0942879668711848
AT1G20380_at 3.559748478504 2.96946326216431 3.80172409373919 3.55972464141578 3.56878076348114 3.79403496255949 2.89011243161152 3.17682840184933 2.58455811372552 3.02641453886582 3.10993622927431 3.63850289186690 3.27127197826879 3.45497015996158 3.41192206739113 3.10844868131259 3.20741176583600 2.94295324554861 3.1228558855568 0.244277234427108 0.250705049444152 0.237481846922149 0.24552153975475 0.236160275685289 0.25260855617333 0.238676695604555 0.242719436230239 0.239742930871245 0.231708541514922 0.238089812544175 0.232324802282233 0.231469365211079 0.242589317557735 0.233483628810818 0.231469365211079 0.244311529728954 0.233638686579722 0.243514483522647 1 1|0 +|/ 7064135 7064848 7064522.125 7061655 7065168 + gene protein_coding_gene FALSE TRUE AT1G20380.1 prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative similar to prolyl oligopeptidase [Arabidopsis thaliana] (TAIR:AT1G76140.1); similar to prolyl endopeptidase [Homo sapiens] (GB:NP_002717.3); similar to prolyl endopeptidase [Homo sapiens] (GB:BAA86936.1); similar to PREDICTED: prolyl endopeptidase [Pan troglodytes] (GB:XP_518657.2); contains InterPro domain Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller; (InterPro:IPR004106); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S9A, prolyl oligopeptidase; (InterPro:IPR002470) 0.444464459908196 3.97375418419184 0.00222836863793404 1 4.12231061187373 6.5047787828232 0.444464459908196 0.127162313676154
AT3G14910_at 2.98965774085207 3.22698927940598 3.34665550245811 3.4953387954453 3.48639265328317 3.49412831242482 3.01886952344173 2.41906226477437 3.02996948837724 2.60596212152153 3.41447208394662 2.95943416794038 2.71826230415408 3.23313516132091 2.86252187030519 2.98565097704430 2.76125955486679 2.94069833585622 2.39863758166108 0.199117583440018 0.196053603450213 0.209215463543417 0.196568638946521 0.193994726963015 0.209588522274382 0.199884313331356 0.196601710463836 0.201594700106366 0.201691853245270 0.193994726963015 0.195183658992866 0.20231936540398 0.200742695476361 0.201435408831732 0.199614399395004 0.201141582431862 0.195754470350053 0.200995679961132 3 3|0 +|/ 5016753 5017528 5017190.556 5015433 5017812 + gene protein_coding_gene FALSE TRUE AT3G14910.1 similar to Os09g0315800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062848.1); similar to PREDICTED: similar to rGAP-iso [Gallus gallus] (GB:XP_419406.2); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.424111845096835 3.97374539474202 0.00222840196589267 1 4.12229755297717 6.01594627773532 0.424111845096835 0.114564483763404
AT1G30850_at 0.987586394494219 1.19231167328475 2.15319568962145 2.3563927875930 0.714070158718948 1.12243988791274 1.01682678260867 1.16158922544202 0.88616133376913 0.598696105732243 0.903974822513033 1.05608710232111 1.2535606202841 1.31122852640131 0.74985852706663 0.801412544696338 0.909235847926939 1.22273973665413 0.75422205067141 0.235756303768778 0.229518317604279 0.231598555218167 0.231534036831143 0.226781429089217 0.230899038994379 0.226781429089217 0.226781429089217 0.230206560824261 0.232469863783421 0.233825407603492 0.231547266936797 0.226781429089217 0.226781429089217 0.232747893892484 0.226781429089217 0.236242853476924 0.226781429089217 0.235974055010400 1 1 + 10985468 10985959 10985737.545 10985059 10986276 + gene protein_coding_gene FALSE TRUE AT1G30850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34910.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61849.1) 0.388299248964738 3.97368881032416 0.00222861653589355 1 4.12221348260307 2.22423759797975 0.388299248964738 0.0900754929506088
AT2G38650_at 5.33837288369548 5.77762765902466 4.8751814443318 4.87397227825734 5.82258992695837 5.21274600268544 6.48794410701903 6.4984013764723 6.2726514513368 6.26894056323005 6.48187581242394 6.87322384273379 6.33306100285545 6.44844977003601 6.02109427958431 6.11741479146215 5.90538051875032 5.91373318042355 6.45111939609261 0.205748257290766 0.199186403797202 0.20538037726667 0.214373769809135 0.213197811682692 0.199958024343178 0.212579352018450 0.20273231302084 0.206793793948671 0.211778939421413 0.205099579132799 0.202805495697716 0.199186403797202 0.201485868340129 0.215655186166575 0.206917643180645 0.218221646042305 0.212848398614727 0.215663705262408 2 2 - 16169012 16169584 16169347.364 16168886 16172853 - gene protein_coding_gene FALSE TRUE AT2G38650.1 GAUT7/LGT7 (Galacturonosyltransferase 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to putative glycosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAT01328.1); similar to Os03g0330000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050007.1); similar to Os07g0681700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060656.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.44929437363205 -3.973433065348 0.00222958659750665 1 4.1218335035756 11.9071959364740 -0.44929437363205 0.130075094908900
AT1G22610_at 8.69464913336004 8.7824465775492 8.28255900380285 8.31117469514642 8.13217435623989 8.4233065634631 8.56585947529171 8.6853263351432 9.52868913112742 9.0865142667028 9.14597659504093 9.30487977264401 8.70057918412098 9.04896652290988 9.21028551838826 9.1591120269857 8.34395196064641 9.03638881741969 9.27980417622969 0.092149460011942 0.0906998798498196 0.090785461940209 0.0934798122017677 0.0878685584613993 0.0951261236851778 0.091698362362416 0.0967610054840251 0.0955247013948417 0.090996666911235 0.0878685584613993 0.0924390485915033 0.095073591466302 0.0934183545660019 0.0901468247438634 0.0899953676940052 0.0995507296388896 0.0911702049314191 0.0878685584613993 1 1 + 7997018 7997498 7997261.091 7994280 7997577 + gene protein_coding_gene FALSE TRUE AT1G22610.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51570.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57880.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.349667516961729 -3.97190246662325 0.00223540147194371 1 4.11955918978953 17.6307387213943 -0.349667516961729 0.0567549495214621
AT4G38090_at 7.75663710327673 7.74159581067245 8.02391005020144 7.83171071724915 8.22728120644248 8.32425247132267 7.31196128569163 7.24107498015567 7.56431107529285 7.74528838863792 7.93890504171897 7.48486065645955 7.65009658564382 7.60261880316611 7.40099194323457 7.9039838585894 7.95664295597738 7.90874691975288 7.63758155945691 0.162930421503734 0.160799773204784 0.163770714350093 0.164969334963604 0.160691458283358 0.165043205219737 0.161377415190622 0.156552828866689 0.161313666766386 0.159952448082815 0.160679317554180 0.153496018748214 0.160440931811471 0.158899269622181 0.15275318984277 0.157141642921891 0.158892611018757 0.164466451006832 0.158750377136181 4 4|0 -|/ 17883834 17884512 17884308 17883694 17884720 - gene protein_coding_gene FALSE TRUE AT4G38090.1|AT4G38090.2 similar to Os08g0478100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062049.1); similar to hypothetical protein TTC0689 [Thermus thermophilus HB27] (GB:YP_004664.1); contains InterPro domain Protein of unknown function UPF0029; (InterPro:IPR001498) 0.335383410396711 3.97074148748227 0.0022398226501835 1 4.11783387459462 15.4972610464751 0.335383410396711 0.0393086035379693
AT3G01090_at 8.01018348573597 7.69227965477252 7.96204500795062 7.34172173732975 8.20521462899523 7.95168445961739 7.7750713734343 7.45365856132238 6.82042866438981 7.15143626787201 7.66537127112821 7.77533234205639 8.08647252413541 8.0370081813399 7.5896644855353 7.95593520652229 8.35940559156259 7.50108217197294 7.24449053775445 0.18009987154837 0.165369231177755 0.172856721214803 0.168798723328874 0.170904976320503 0.171294645022335 0.167782362524527 0.169659854379897 0.212274168801754 0.176816824369597 0.171593678642698 0.163815394378958 0.173479979484772 0.174468406097877 0.182868984951595 0.169040854606913 0.166347857569707 0.178724345473037 0.172280192007767 3 0|3 /|- 31482 32340 31975.111 31188 34604 - gene protein_coding_gene FALSE TRUE AT3G01090.1|AT3G01090.2 AKIN10 (Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE 1.1); protein kinase encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1 Identical to SNF1-related protein kinase catalytic subunit alpha KIN10 (EC 2.7.11.1) (AKIN10) (AKIN alpha2) (KIN10) [Arabidopsis Thaliana] (GB:Q38997;GB:O04728;GB:Q38987;GB:Q39076;GB:Q8RWD2); similar to AKIN11 (Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE 1.2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G29160.2); similar to SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3), kinase [Arabidopsis thaliana] (TAIR:AT5G39440.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); similar to SNF1 [Lycopersicon esculentum] (GB:AAF66639.1); similar to SNF1-related protein kinase [Cucumis sativus] (GB:CAA71142.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Kinase-associated, C-terminal; (InterPro:IPR001772); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.465766835716578 3.97063228179383 0.002240238989174 1 4.11767157582486 15.2706835945383 0.465766835716578 0.139890645595784
AT3G09010_at 6.39255484728382 6.66945625384055 8.14070061342623 8.20415765802779 6.04318177706496 5.61011488095788 4.65286374849157 4.76529513628325 5.70480499499046 5.32971639949462 4.6491813509083 4.7931655142213 4.29319031310597 5.04867232415702 4.3904404955602 4.61244246948157 4.3910589581366 4.49918326514769 4.51686879814841 0.232412509677646 0.235490534009430 0.235352780232229 0.241345517621185 0.235405801233696 0.238198051050075 0.242264915719926 0.238832974190810 0.249468532360849 0.236243960396093 0.233812523910037 0.231062074355393 0.23275595373521 0.230571907196282 0.247088569139686 0.230571907196282 0.232857323570430 0.235891181273629 0.230571907196282 3 3 + 2751289 2752053 2751783.545 2749958 2752281 + gene protein_coding_gene FALSE TRUE AT3G09010.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16670.1); similar to putative receptor ser/thr protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06827.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.390183170678212 3.9702251146109 0.00224179199509789 1 4.11706643942865 11.1940223980308 0.390183170678212 0.0917171659809737
AT1G56450_at 10.4772443982286 10.4649487131279 10.7613325792847 10.6273617393724 10.6469407346037 10.3629033162322 10.2988371620960 10.2011782597329 10.0269291681971 10.0971052932706 10.4646596642278 10.5452096256343 10.4279571045692 10.4771083485571 10.4653232142835 10.4315348294517 10.3678158809719 10.4954925887594 9.87316439380812 0.0814210770541034 0.0786535868844159 0.0828962916303415 0.0815227311909621 0.081002660684871 0.0820973741358849 0.0786535868844159 0.0786535868844159 0.101028222172679 0.0802538017817467 0.0812797102702278 0.0786535868844159 0.0812536781400922 0.0786535868844159 0.0830911101114397 0.0793016983074303 0.0828007195533773 0.08297905280176 0.0816244510440965 1 0|1 /|+ 21147239 21147798 21147493.5 21145548 21148065 + gene protein_coding_gene FALSE TRUE AT1G56450.1 PBG1 (20S proteasome beta subunit G1); peptidase 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds Identical to Proteasome subunit beta type 4 precursor (EC 3.4.25.1) (Proteasome subunit beta type 7) (20S proteasome beta subunit G-1) (Proteasome component H) (PBG1) [Arabidopsis Thaliana] (GB:Q7DLR9;GB:O23718;GB:Q9C7X3); similar to PBA1 (20S proteasome beta subunit A 1), peptidase [Arabidopsis thaliana] (TAIR:AT4G31300.2); similar to Peptidase T1A, proteasome beta-subunit [Medicago truncatula] (GB:ABE89546.1); similar to Os09g0515200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063665.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.349701915520929 3.97016103971165 0.00224203648978827 1 4.11697120849168 20.7093203339092 0.349701915520929 0.0569541502764572
AT3G53560_at 7.60632035757215 7.93581963100467 7.56784920458167 7.45327518422546 6.94966995229489 6.93022108790238 8.073407279595 8.23013456116727 7.7506818900985 7.9615286073218 7.41832709337942 7.8332347221646 7.66548809691964 7.78045316365 8.22605239593463 8.18026916576733 7.55909140669281 7.64628426078087 7.59952449293328 0.159588843636686 0.156364732968943 0.161357286372282 0.169795184856726 0.156639912064546 0.172862467615564 0.163337894419181 0.160138069182109 0.164006229349197 0.154854422683713 0.155173590431352 0.162634087315274 0.154660341787740 0.156737995448092 0.160719299475982 0.160255548671180 0.162393568863891 0.156396308678821 0.153417323538273 3 3 - 19870932 19871423 19871198 19870605 19872009 - gene protein_coding_gene FALSE TRUE AT3G53560.1 chloroplast lumen common family protein similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1); similar to TPR repeat [Medicago truncatula] (GB:ABE81686.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.359047446020187 -3.96974879154223 0.00224361019493603 1 4.11635849339486 15.3729513414324 -0.359047446020187 0.0662685661711881
AT3G15980_at 7.488936018276 7.60598568247541 7.46234999725184 7.21429811254147 6.91109907432901 6.46297016373361 7.26498287981647 7.50031466965091 7.09242558912463 7.08937994556054 7.47404849958292 7.79777349803202 6.20958813325634 7.07745300259325 7.2984737478857 6.7451611541737 5.64990239767203 6.69029918114227 7.47151738056502 0.226812122227337 0.224997957027221 0.234731176349837 0.225146178329600 0.224488505168243 0.256005956503716 0.230729295116468 0.236035522177435 0.241464528813604 0.225933386660699 0.234742921557205 0.225738221273798 0.225527228267332 0.248405252519857 0.227039637621001 0.227995465882843 0.254153051523558 0.24446901433214 0.225675256785443 3 3|0 -|/ 5412082 5413076 5412501.2 5411322 5418451 - gene protein_coding_gene FALSE TRUE AT3G15980.1|AT3G15980.2|AT3G15980.3 coatomer protein complex, subunit beta 2 (beta prime), putative similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to Coatomer protein complex, subunit beta 2 (beta prime) [Rattus norve (GB:AAH88397.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692)|similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to Coatomer protein complex, subunit beta 2 (beta prime) [Rattus norve (GB:AAH88397.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.401156164440919 -3.96914791123539 0.00224590603753506 1 4.1154653761286 14.2816729531972 -0.401156164440919 0.0996276365708744
ATCG01100_at 11.7534293144038 12.1998359836067 12.4031570614719 12.2275433226623 12.3421684381616 11.8411706090740 12.4956900543614 12.4284270732383 12.3372983986406 12.6746587569951 13.7358802723808 13.7740823035099 13.5132969747737 13.1678523533079 13.2008741312619 13.6078549720469 13.0853760350182 13.3448152653666 12.6283288565267 0.0915467885316778 0.089481217525235 0.089481217525235 0.092647669222695 0.089481217525235 0.0907724774568621 0.091321883108609 0.0938714465077513 0.112331753535001 0.0955404181518058 0.0972606782362817 0.0904856599074988 0.091679641184834 0.098647867031156 0.100099531755293 0.089481217525235 0.0950639125841304 0.093561138645779 0.0937281242007336 C C - 119863 121495 120217.545 119847 122009 - gene protein_coding_gene FALSE TRUE ATCG01100.1 NADH dehydrogenase ND1 Identical to NAD(P)H-quinone oxidoreductase subunit 1, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1) (ndhA) [Arabidopsis Thaliana] (GB:Q37165); similar to NADH-plastoquinone oxidoreductase subunit 1 [Gossypium hirsutum] (GB:YP_538985.1); contains InterPro domain Respiratory-chain NADH dehydrogenase, subunit 1; (InterPro:IPR001694) 0.433078142922011 3.96792236647085 0.00225059617507558 1 4.11364363384667 25.1991857533787 0.433078142922011 0.120598396018054
AT3G62450_at 7.1355172756142 7.36762790814476 7.93932524023921 7.99479519874293 7.77296675225231 7.49669880049709 7.51181996319661 7.25110915715718 6.6936199163975 7.10714737936695 7.06055847391896 7.27117175328079 7.11700365247736 6.92810072572306 7.60535162194727 7.43007450427819 7.24189577095623 6.9349271189407 7.01817102108888 0.189502491291560 0.171948472137340 0.180316094871472 0.177373230482192 0.173314887115456 0.178666763670933 0.177132170704882 0.186180560761722 0.186982006201718 0.180624407929390 0.176608952556941 0.171948472137340 0.179601967395274 0.177332232468297 0.175097284969742 0.174255318710427 0.187734848817121 0.177437173604856 0.175990622619057 3 3|0 +|/ 23109128 23109579 23109386.1 23109120 23109606 + gene protein_coding_gene FALSE TRUE AT3G62450.1 similar to hypothetical protein MtrDRAFT_AC140551g45v1 [Medicago truncatula] (GB:ABE91880.1) 0.371708634488620 3.96656713115933 0.00225579449967782 1 4.11162886577502 14.6278733161346 0.371708634488620 0.0776331723288572
AT4G12590_at 9.32602218016614 9.6924267606368 9.6636049922047 9.74683600044749 10.0274386526942 9.71630911393394 9.3464880606295 9.36338293869713 8.87244930976376 8.48149504030129 9.01042785739954 9.11280956652717 9.01932942522783 8.98620268014886 9.13042772235128 8.96330412591406 8.78734895807006 9.16924962977386 8.50120202148912 0.114448998201882 0.112751532216405 0.112564894152329 0.111875309778706 0.120520830922669 0.119892638772168 0.121937136640824 0.112034412813574 0.122709543145460 0.115854582557524 0.121888327765705 0.113907821907702 0.120784776108768 0.115832929089768 0.116565503756523 0.111262959196098 0.121894391305880 0.110686869134095 0.115033955338039 4 4|0 -|/ 7451321 7452656 7452173.778 7451001 7453085 - gene protein_coding_gene FALSE TRUE AT4G12590.1 similar to Os09g0497400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063559.1); similar to AT4g12590-like protein [Hyacinthus orientalis] (GB:AAS20990.1); contains InterPro domain Protein of unknown function DUF850, transmembrane eukaryotic; (InterPro:IPR008568) 0.380236288306443 3.96656559608465 0.0022558003948944 1 4.11162658350255 18.4306983971902 0.380236288306443 0.0844724369084738
AT2G03350_at 7.31200176875657 7.18055288005675 6.80890219779945 6.82425105980226 7.27286975561343 7.32987689151692 8.43477983605645 8.49813915089995 8.69151253636564 8.58241407288318 9.49764255151646 9.07966050669204 8.67452841727427 8.99595273124076 9.14624820510218 8.42735749783875 7.82183446825276 8.6423792222948 8.65910786345867 0.202354261969086 0.205542168558245 0.22167527199642 0.211615277614395 0.215221937524245 0.217105186013512 0.206349883250713 0.204346551183788 0.197948270191944 0.200030990219686 0.195973554413039 0.195531045175084 0.198526844640261 0.199467748360115 0.195166771753117 0.192808800226698 0.207445406704504 0.193047016945515 0.204766306724799 2 0|2 /|- 1019748 1020081 1019934.444 1019576 1021183 - gene protein_coding_gene FALSE TRUE AT2G03350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08890.2); similar to cp protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF94591.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.328018903484371 -3.96648845830571 0.00225609665122452 1 4.11151189847696 16.1726943296939 -0.328018903484371 0.0272409227812206
AT3G25110_at 2.18712279969423 2.12499736505779 2.46598825932247 2.3347326718485 2.21139387827288 2.47080875489468 2.52024079794887 2.34108359937033 2.60824559768442 2.53197955903546 3.59221600743251 3.40702837660954 2.73765129761468 3.13388461385307 3.28577656117684 2.76542994627410 3.30920218427065 2.8399453968575 2.37937231589911 0.197225662735427 0.203604094638972 0.20316450219587 0.199790454697822 0.196996301972378 0.203807669795254 0.196996301972378 0.201567686415813 0.203557755043872 0.202605169956829 0.212940062026179 0.202544626917852 0.210444032484998 0.204429529797109 0.196996301972378 0.198156778483986 0.196996301972378 0.196996301972378 0.196996301972378 3 3|0 -|/ 9146623 9147518 9146997.3 9146281 9148493 - gene protein_coding_gene FALSE TRUE AT3G25110.1 ATFATA (ARABIDOPSIS FATA ACYL-ACP THIOESTERASE); acyl carrier/ acyl-ACP thioesterase Encodes a FatA acyl-ACP thioesterase similar to acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative [Arabidopsis thaliana] (TAIR:AT4G13050.1); similar to Br FatA1 (GB:AAC49002.1); contains InterPro domain Acyl-ACP thioesterase; (InterPro:IPR002864) 0.352364528852471 3.96629764274004 0.00225682967378294 1 4.11122819880047 5.15225816024327 0.352364528852471 0.0600679141941001
AT4G26750_at 4.96031965725453 5.09511181779575 5.10349828262803 5.43230349742672 6.22648737599256 5.66485981553537 4.72252241850928 4.32098353336261 5.07889049939818 4.43595310690413 4.73452486118966 4.22220490727891 4.74781877961436 4.46998577557934 4.25910413200727 4.74394333222238 5.3089670670047 4.96253030275175 4.29051732804646 0.193576432725577 0.196664033163277 0.204540691075378 0.197142309176115 0.219693450474374 0.198328829137163 0.204862672155869 0.191772665366387 0.199426088813216 0.191772665366387 0.191772665366387 0.197484338915988 0.191772665366387 0.191772665366387 0.194837512301222 0.191827703344457 0.196759869905085 0.197143909466573 0.195483259174653 4 4 - 13475867 13476427 13476151.909 13475700 13478529 - gene protein_coding_gene FALSE TRUE AT4G26750.1 hydroxyproline-rich glycoprotein family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to Os06g0308800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057476.1); similar to hypothetical protein CC1G_01853 [Coprinopsis cinerea okayama7#130] (GB:EAU92808.1); contains InterPro domain Protein of unknown function DUF605; (InterPro:IPR006745) 0.455700401377459 3.96577041659862 0.0022588563136751 1 4.11044430614788 9.83222173622426 0.455700401377459 0.134375669289799
AT2G06530_at 9.83790615900113 9.98023065363713 10.2857418499433 10.2461429416188 10.3208206346986 10.145986656989 9.69013048303228 9.72305234369216 9.37082399321232 9.4332839486522 9.63363113788465 9.46294696509942 9.59425300630252 9.67306394655188 9.4800395244583 9.6621387495175 9.46063641206703 9.62920457206918 9.23249264384027 0.0886852662781461 0.0884461466068821 0.0885719641263211 0.0881053450655003 0.0908676181120957 0.0907072452662171 0.087751096993307 0.0867610027491262 0.0971917811676331 0.0886052411055896 0.0881007591131162 0.0861755634659495 0.0880504798089043 0.0878124785499027 0.0900619534279341 0.0861755634659495 0.100720009730890 0.0906489253670153 0.0937379023309008 2 2|0 -|/ 2588788 2589749 2589199.444 2588542 2590442 - gene protein_coding_gene FALSE TRUE AT2G06530.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G03950.1); similar to BRI1-KD interacting protein 109 [Oryza sativa (japonica cultivar-group)] (GB:BAD11337.1); similar to Os07g0236800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059248.1); similar to Os11g0703400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068537.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.335399435823633 3.96518362702327 0.00226111413934999 1 4.10957180758795 19.4887628742326 0.335399435823633 0.0400183452666695
AT1G73740_at 5.46622180448588 5.93619955200119 5.98219265707865 6.39240230913885 6.57661046645183 6.27408378575288 6.20433391038144 6.02720762215404 6.39397696458786 5.90112890573034 6.6369133361839 6.74017329017604 6.05166768171386 6.90430902748161 6.17848988004858 6.4545212264982 6.36420465379763 6.78067733207056 5.81259654054876 0.201434764172611 0.185514578855087 0.184266235257152 0.181114642662374 0.184863583992519 0.183525516514609 0.181499649927626 0.196983527218012 0.186605081332494 0.190983138086349 0.181918979265241 0.181650500401325 0.186520438683116 0.183636141683661 0.196194869275122 0.180091722493186 0.196240463626589 0.184403661726933 0.183754604071090 1 1|0 +|/ 27738808 27739605 27739071.556 27737940 27739850 + gene protein_coding_gene FALSE TRUE AT1G73740.1 glycosyl transferase family 28 protein similar to undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase [Gramella forsetii KT0803] (GB:CAL67722.1); similar to undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase [Salinibacter ruber DSM 13855] (GB:YP_444703.1); similar to Os01g0516700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043195.1); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235); contains InterPro domain Glycosyl transferase, family 28; (InterPro:IPR004276) 0.437900166111948 3.96402815199513 0.00226556699481446 1 4.10785358931873 12.3822916919899 0.437900166111948 0.123833539749296
AT4G13710_at 3.06560055517869 2.76921614008606 2.61747650181562 2.8859078911223 3.44656474051368 3.58262891203989 3.46474975885185 2.89462530150363 3.41506450415381 3.28590792159808 4.02738604419006 4.81436776709931 3.86058684302293 4.00213412342646 4.79692496612183 4.16973988274615 3.83478441227474 3.75936505547757 3.41160655230334 0.205299584055468 0.205889334809222 0.197721995170787 0.197631947629749 0.197014204784399 0.202065906559914 0.197014204784399 0.19757252721424 0.207688118679610 0.202853191824119 0.205270516549827 0.209490355874858 0.204895138268864 0.201216341140539 0.212630920906521 0.209453785035076 0.199023644202730 0.197575631784403 0.200505782125304 4 4 + 7965200 7965967 7965624.727 7962428 7966440 + gene protein_coding_gene FALSE TRUE AT4G13710.1 pectate lyase family protein Identical to Probable pectate lyase 15 precursor (EC 4.2.2.2) (Pectate lyase A11) [Arabidopsis Thaliana] (GB:Q944R1;GB:O23668;GB:Q9SVP1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G04680.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24230.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.435949024955475 3.9617510040555 0.00227436916056247 1 4.10446687332918 6.85535662321228 0.435949024955475 0.122790117882208
AT2G21150_at 5.50697368342841 5.29698945435063 5.20931979985477 5.08750594631804 5.29696148859905 5.31719369892373 5.30021554020149 5.48617687952032 4.9292995040674 5.47558073518255 4.94440852722837 4.99934984179503 5.33154618333683 4.89577169610211 4.85762648555883 5.4537293248963 4.38021607362845 4.57670871854932 5.94713504494555 0.294262415207845 0.291738230209557 0.306239020448974 0.291738230209557 0.291738230209557 0.292843292516956 0.291738230209557 0.302854789090212 0.292301562476665 0.301176099500153 0.291738230209557 0.293271508903405 0.305919285899142 0.292602140078643 0.301815560439444 0.291738230209557 0.295456860272507 0.297035466090502 0.305640017934126 2 2|0 +|/ 9074162 9074976 9074523.2 9072419 9075174 + gene protein_coding_gene FALSE TRUE AT2G21150.1 XAP5 family protein similar to Os09g0535300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063780.1); similar to PREDICTED: similar to XAP-5 protein isoform 5 [Danio rerio] (GB:XP_706947.1); contains InterPro domain XAP5 protein; (InterPro:IPR007005) -0.345297905481454 -3.96081141810865 0.00227801142662835 1 4.10306925252085 10.5029627452923 -0.345297905481454 0.0530358066067725
AT1G68710_at 5.50239503436452 5.61168809320155 6.65233467739926 6.54546150352744 4.60340235235931 4.36194487728022 4.34644641842462 4.21827603027999 3.33333049499800 3.30936535083786 2.8156584586141 3.94601721157830 3.15005755479948 3.0846304546011 2.97058164303765 3.21131621239998 3.45734999980836 4.011889671987 3.1355358917438 0.236836785458265 0.237271913244076 0.229964616814157 0.23746467721646 0.232189010157489 0.232830112609473 0.242769839792505 0.231308467993609 0.236657061256320 0.231408033177979 0.238505997530901 0.231754123767136 0.229964616814157 0.235543225154501 0.235447113693857 0.229964616814157 0.231770854903105 0.234805401406222 0.233515305049943 1 1 - 25797161 25797735 25797478.727 25796870 25801638 - gene protein_coding_gene FALSE TRUE AT1G68710.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 9 (EC 3.6.3.1) (Aminophospholipid flippase 9) (ALA9) [Arabidopsis Thaliana] (GB:Q9SX33); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G26130.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.346305765116957 3.96041962455998 0.00227953198973604 1 4.10248642890875 8.52541773837785 0.346305765116957 0.0542012645851382
AT2G22260_at 3.18742280438953 2.71677094272595 3.06080931740209 2.90959624722114 2.97745751620614 2.75511261412673 2.90123158037397 2.60741497973400 2.17104111709164 2.70465749454681 3.53621199703122 3.31691119045103 3.55865350649693 3.48264958341223 3.30899757737734 3.77939814208251 3.21472655904604 3.27159406544863 3.17910273117828 0.265589279436054 0.261414203294426 0.266322250825296 0.267713720407925 0.262993218664161 0.271643696575604 0.264207415365118 0.260935057747085 0.270949875133484 0.265905452972751 0.266670612619343 0.259029744259596 0.259226350965607 0.266407967850918 0.269887428006915 0.259029744259596 0.264193056143149 0.263258675315237 0.259029744259596 2 2|0 +|/ 9469143 9470104 9469552.2 9468205 9470266 + gene protein_coding_gene FALSE TRUE AT2G22260.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22270.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD28589.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.410621446831247 3.96017359006216 0.00228048739688640 1 4.10212042240708 5.94876530457602 0.410621446831247 0.106698272552117
AT3G25070_at 9.26757410849775 9.19458699758283 9.52049216381525 9.49056131427778 9.470762714573 9.27004471170314 8.61978189878622 8.53996647497884 8.43921042289764 8.45037673828505 8.5903826235758 8.76213365669756 8.47905397863427 8.68529224017247 8.2886847126718 8.83314193257108 8.5456637600171 8.55207162802025 8.47516651760721 0.139128957574751 0.139263965762375 0.141301364133948 0.139785561496912 0.146531779425853 0.142336992671953 0.147422068162931 0.134649419638624 0.155409103502833 0.140391081045161 0.144863605647792 0.133732718310251 0.140302855064459 0.144291657933003 0.139428761837338 0.137541750970744 0.139741817525274 0.142543026938626 0.140914925963059 3 3 + 9132988 9133571 9133250.9 9132317 9134037 + gene protein_coding_gene FALSE TRUE AT3G25070.1 RIN4 (RPM1 INTERACTING PROTEIN 4) Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Identical to RPM1-interacting protein 4 (RIN4) [Arabidopsis Thaliana] (GB:Q8GYN5;GB:Q9LSG9); similar to defense protein-related [Arabidopsis thaliana] (TAIR:AT5G48657.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08744.1); similar to Os08g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062298.1); contains InterPro domain Nitrate-induced NOI; (InterPro:IPR008700) 0.334811514872978 3.96004292702637 0.00228099496006418 1 4.10192604169121 17.6952067777644 0.334811514872978 0.0397954966200438
AT3G24140_at 5.29049068290575 5.42974893094613 4.3280645850457 4.83530983531625 5.59818423887075 5.11035641218471 4.56910189071932 4.76672498609707 3.94433910899537 3.76269424748566 5.1684132977393 5.65545061981856 4.92975247657176 4.13728424759655 5.06497738906624 5.04498633650486 4.94343741779888 4.69342875588666 4.34540731619446 0.239039605236627 0.235487911881652 0.246698858949024 0.247167137208732 0.241056921270285 0.23786642813475 0.242841304858744 0.238704951917517 0.259796902696742 0.249275293082448 0.238828525890909 0.241326580379664 0.240580778160679 0.248171714160964 0.239670877712276 0.238738133091495 0.243921981037706 0.244601139343216 0.235487911881652 3 3 - 8716413 8717035 8716639.273 8715243 8718218 - gene protein_coding_gene FALSE TRUE AT3G24140.1 FMA (FAMA); DNA binding / transcription factor/ transcriptional activator Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G01460.1); similar to helix-loop-helix DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19748.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.445599119292485 3.95996864647776 0.00228128355671791 1 4.10181553726058 9.47709596618472 0.445599119292485 0.128774239412026
AT2G47470_at 10.7469473812500 10.635163316146 11.2762851852959 11.2786364954812 10.6758357773708 10.4603791043457 10.3507542889058 10.1346280203155 9.35576343633803 9.45330874158046 9.4817835858916 9.81445390897847 9.54926792963568 9.36059022202718 9.76498458784498 9.33487726461501 9.80139866296435 9.65128576817714 9.25489444299162 0.0919152709873 0.0903263698984097 0.0971024599370559 0.095254355819874 0.0940861980856124 0.0915508301050879 0.0932887796893735 0.0953596491230776 0.0966056606176853 0.101878802841873 0.0969299966030956 0.0903263698984097 0.0949341083641873 0.0949226772284145 0.0916802647174127 0.092771811165813 0.0928761000003842 0.0972477069405418 0.101602797069935 2 2|0 +|/ 19489712 19490722 19490306.333 19488490 19491085 + gene protein_coding_gene FALSE TRUE AT2G47470.1|AT2G47470.2|AT2G47470.3|AT2G47470.4 ATPDIL2-1/MEE30/UNE5 (PDI-LIKE 2-1, maternal effect embryo arrest 30, unfertilized embryo sac 5); thiol-disulfide exchange intermediate|ATPDIL2-1/MEE30/UNE5 (PDI-LIKE 2-1, maternal effect embryo arrest 30, unfertilized embryo sac 5) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Identical to Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) [Arabidopsis Thaliana] (GB:O22263); similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to protein disufide isomerase-like protein [Glycine max] (GB:BAD24713.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Endoplasmic reticulum ERp29, C-terminal; (InterPro:IPR011679); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Endoplasmic reticulum ERp29-type, C-terminal; (InterPro:IPR013331); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788)|Identical to Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) [Arabidopsis Thaliana] (GB:O22263); similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to putative protein disulphide isomerase [Brassica napus var. napus] (GB:AAS68180.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788)|Identical to Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) [Arabidopsis Thaliana] (GB:O22263); similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to disulfide-isomerase precursor-like protein [Solanum tuberosum] (GB:ABB02620.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Endoplasmic reticulum ERp29, C-terminal; (InterPro:IPR011679); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Endoplasmic reticulum ERp29-type, C-terminal; (InterPro:IPR013331); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) 0.348042794966242 3.95886120412027 0.00228559072572368 1 4.10016794526266 20.1695715869240 0.348042794966242 0.0562449881947923
AT3G05020_at 3.42191861865306 4.63448897782158 2.17009386890025 2.47813497194833 3.21612583921891 4.02964903035295 6.09681155276151 6.69889323784388 3.43547591979885 4.72349972883712 5.16567273961549 5.09590428099675 4.65588479067859 5.42169699099302 5.23644137965088 3.24120722574319 4.28206865500905 4.89587478006855 3.81874353366429 0.239849587270219 0.241914429634191 0.238388047686420 0.237933838773078 0.237933838773078 0.243166113496571 0.242642133876865 0.241356815525020 0.240285984289265 0.246947187659588 0.240832995146510 0.237933838773078 0.240526444153077 0.237933838773078 0.243110862762049 0.243726052126182 0.241247188047730 0.241502620796789 0.240840722081058 3 3|0 -|/ 1391896 1392860 1392323.556 1391638 1392960 - gene protein_coding_gene FALSE TRUE AT3G05020.1 ACP1 (ACYL CARRIER PROTEIN 1) encodes an acyl carrier protein expressed in leaves, roots, and dry seeds. Protein is not regulated by light. Identical to Acyl carrier protein 1, chloroplast precursor (ACP) (ACP-1) [Arabidopsis Thaliana] (GB:P11829); similar to ACP5 (ACYL CARRIER PROTEIN 5), acyl carrier [Arabidopsis thaliana] (TAIR:AT5G27200.1); similar to acyl carrier protein 1 (GB:1908420B); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) -0.741378187293607 -3.95861415351514 0.00228655273138306 1 4.09980037369201 8.46422297024315 -0.741378187293607 0.278480312149830
AT4G16720_at 10.9104041123777 11.1119173306258 10.6886763706357 10.7496799373299 10.6234196379195 10.7244814680012 11.2513581285298 11.3590585579498 10.3835147285748 10.6125506509652 10.4332008373567 10.6268712950386 10.2244168980385 9.86993555715082 10.8907935965622 10.1423803713644 10.4009925793978 9.99964323274127 10.6176008253184 0.0815374920833793 0.0801757030344104 0.0833943856608846 0.0821502039342015 0.0825653102493502 0.0814018405971422 0.0802946179631978 0.0842053085206653 0.0886251476182285 0.0844782446957022 0.0808644330189967 0.0801757030344104 0.0817100262258586 0.0894524027878752 0.0863817159438971 0.0806371287343225 0.0864731454146285 0.0867216435287135 0.0827525727509543 4 4|0 -|/ 9400298 9401124 9400624.4 9399982 9401404 - gene protein_coding_gene FALSE TRUE AT4G16720.1 60S ribosomal protein L15 (RPL15A) Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15 (RPL15B) [Arabidopsis thaliana] (TAIR:AT4G17390.1); similar to 60S ribosomal protein L15 [Brassica oleracea] (GB:ABD65137.1); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Ribosomal protein L15e; (InterPro:IPR000439) -0.337989808947849 -3.95742787939182 0.00229117790638647 1 4.09803527058388 21.3580834583757 -0.337989808947849 0.0445063114426479
AT2G46310_at 2.05272269734974 1.92639943687863 2.36116787549173 2.14296015356306 2.23228425132684 2.24425004482683 2.24303453767168 2.14420560659124 1.96790578997598 1.81939269045726 2.41396725938158 2.56122328783354 2.23077422645728 2.05783589552704 3.09192185689025 2.49204572549299 2.53255795883678 2.75191491981884 2.18434902472845 0.179964294070744 0.176586295651298 0.183928678824793 0.175846093131899 0.176923807446115 0.176292179433144 0.173763483716429 0.185214770584553 0.187373274869688 0.177484505897628 0.176072203535207 0.189584206933234 0.189176182515977 0.180951546584513 0.178702672029945 0.178160480850956 0.186967570147837 0.175581395370472 0.180428803023940 2 2 + 19019023 19019480 19019246 19018576 19019930 + gene protein_coding_gene FALSE TRUE AT2G46310.1 CRF5 (CYTOKININ RESPONSE FACTOR 5); DNA binding / transcription factor CRF5 encodes one of the six cytokinin response factors. It is transcriptionally upregulated in response to cytokinin. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. similar to CRF6 (CYTOKININ RESPONSE FACTOR 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61630.1); similar to Pathogenesis-related genes transcriptional activator PTI6 (PTO-interacting protein 6) (GB:O04682); similar to Os01g0224100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042450.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.339777992285925 3.95650830684589 0.00229476992952036 1 4.09666686874435 4.42191773029598 0.339777992285925 0.0469110669466563
AT3G11580_at 5.90661807931914 6.18193776794297 5.86803521258613 6.25136905350302 4.44678737217437 5.04905697590294 2.73211704194382 3.48704251705109 2.53388216822321 2.70509620564137 2.06109882810064 2.40118141761698 3.01929744596855 2.70273616366967 2.88180142351553 2.67316232130301 3.24679189015153 2.58894872216034 2.03652208230379 0.278044762646075 0.272160584431947 0.255569200178239 0.282561374615443 0.27084237433457 0.257386541288625 0.255714513455275 0.256540554215625 0.262576102746856 0.254709374457444 0.255138757675929 0.258252360441698 0.256958346046279 0.256464113208416 0.257463209921963 0.254709374457444 0.254709374457444 0.254709374457444 0.256613546060450 3 3|0 -|/ 3649892 3651063 3650386.4 3648930 3651338 - gene protein_coding_gene FALSE TRUE AT3G11580.1|AT3G11580.2 DNA-binding protein, putative similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G06250.1); similar to OSJNBa0088A01.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04153.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340)|similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G06250.1); similar to OSJNBa0088A01.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04153.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); similar to RAV transcription factor [Capsicum annuum] (GB:AAW83473.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.549296879907675 3.95537141739372 0.00229921893028492 1 4.09497491887567 7.55139255019472 0.549296879907675 0.186014598864167
AT1G64490_at 3.22932049581652 3.53503963108500 2.90970117320951 2.89605518802981 3.74095793780002 2.90738219390205 3.80312112111930 3.40941850052611 3.29062501297323 3.72939001489006 3.00967548150525 3.21519223628361 2.94199321847775 3.17763440105616 2.85230994171792 3.31210501326423 3.34756531939962 2.62049344851402 4.10665272534122 0.190140314032118 0.190871476428201 0.190140314032118 0.194286616570263 0.195072509505764 0.197200209063845 0.193877558957534 0.190140314032118 0.196878680002128 0.202192595976364 0.193465356880305 0.194390746371664 0.191901258005661 0.194033290931095 0.199420575934517 0.192639788002737 0.191764227580068 0.194546735099900 0.194455547133507 1 1 + 23955846 23956119 23955982.909 23955796 23956376 + gene protein_coding_gene FALSE TRUE AT1G64490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42060.1); similar to putative transcriptional coactivator [Brassica rapa] (GB:BAB41214.1) -0.514984466221117 -3.95519735143607 0.00229990089567851 1 4.09471585336178 6.68812972198378 -0.514984466221117 0.168094853120141
AT3G28960_at 3.28669103958743 3.66175997433923 3.41136026190858 3.51582522571048 3.72826877791586 3.61215049362578 5.02856165578712 5.52978002365267 3.95169076593411 4.18548815721165 4.1958000859188 4.06767298977889 3.82539078864339 3.42418626056953 3.71998008306078 4.23702416250307 4.1441558557501 4.277699969495 3.89814621099023 0.235248429367505 0.233448028713405 0.249127172669638 0.242151200464741 0.235518344713507 0.239339615465674 0.236023315285277 0.240153139529687 0.243853452948408 0.233448028713405 0.236343586403028 0.247251474793459 0.235832323674991 0.233448028713405 0.233448028713405 0.237475283659206 0.243540738352864 0.239822278816813 0.240007961457484 3 3 - 10985500 10986398 10985909.545 10985482 10987004 - gene protein_coding_gene FALSE TRUE AT3G28960.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G15240.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABD32531.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.417541626899244 -3.95439070627798 0.00230306396237156 1 4.09351525398643 7.97093159115437 -0.417541626899244 0.111656197128545
AT1G31870_at 7.33913664891603 7.5200576007567 7.63005155129094 7.57068411976144 7.52091150765568 7.4583525737647 7.07644064529086 6.9621420625448 6.34285433501429 6.41358661179642 6.6699190321866 7.30780783596684 6.70689088671842 7.00403983337376 6.52623827792963 6.90535433041913 6.77508860505978 6.458474743475 6.58198740016902 0.173211289206077 0.173098370445923 0.167710780756972 0.181420824365741 0.175188010261381 0.173857172697624 0.176254207944512 0.176387900279667 0.179020544986260 0.172317368053004 0.168060599993926 0.167710780756972 0.170982755587570 0.190236936986187 0.181156865210552 0.169295321039778 0.174792118672939 0.185825580198869 0.170586279794629 1 1 + 11438766 11439776 11439340.909 11436703 11440089 + gene protein_coding_gene FALSE TRUE AT1G31870.1|AT1G31870.2 similar to splicing factor PWI domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G29210.1); similar to Os08g0178300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061128.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03052.1) 0.334319804777834 3.95315125183802 0.00230793300545318 1 4.09167029174438 14.0049068264815 0.334319804777834 0.0399282785761104
AT1G29990_at 8.59473029095368 8.49726031093604 9.03385289101729 8.93003953762781 9.30090796732271 8.56034424838396 8.72875951694434 8.42580177076165 7.80582076577787 8.14457795977505 8.73109836805093 8.62666866604813 8.42735174799275 8.33804516359349 8.66560364372831 8.51902543270525 8.50631690294982 8.1435934683241 7.92776768731959 0.174513812905835 0.151497404052307 0.155765787038819 0.154538364211514 0.150204011319152 0.165081571343601 0.163597619780606 0.147429279835792 0.168258839992827 0.171412856408981 0.156502465802131 0.154413350476532 0.150031867871313 0.157163745028480 0.166950102492475 0.152649542362687 0.160779379784772 0.168703137901374 0.152224322329868 1 1 + 10507650 10508110 10507886.556 10507577 10509082 + gene protein_coding_gene FALSE TRUE AT1G29990.1 prefoldin, putative similar to prefoldin-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19943.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) 0.464986154286139 3.95284754494842 0.00230912771221689 1 4.09121818319849 16.9860129309759 0.464986154286139 0.140643051729903
AT1G28480_at 4.41499079268451 4.43241997304269 7.17934228558025 6.80821208969998 3.66158990561966 4.01690578260168 3.34888173986596 4.05043816263897 4.38957291412335 4.10762448162311 3.58896231763638 3.46416663561141 3.91925982187416 3.60848699052440 3.85098650209968 3.66315857986268 3.83704114838979 4.23613800771251 3.98608109042363 0.255293575960504 0.294805560241196 0.292313330491868 0.309877608772528 0.255390735477626 0.258108011814425 0.256937793965878 0.247012271988990 0.246349301722389 0.251539732470558 0.249850797302878 0.25682970148661 0.249718936693938 0.259483566797615 0.256161587911799 0.250325484077518 0.255213232957437 0.246349301722389 0.253411461861224 1 1 - 10013622 10013969 10013800.455 10013460 10014059 - gene protein_coding_gene FALSE TRUE AT1G28480.1 glutaredoxin family protein Identical to Glutaredoxin-C9 (AtGrxC9) (GRXC9) [Arabidopsis Thaliana] (GB:Q9SGP6); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G03850.2); similar to Os01g0241400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042552.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81621.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.482381010278937 3.95258986460925 0.002310141866321 1 4.09083458135456 8.70515650606033 0.482381010278937 0.150515002470719
AT3G53980_at 2.18615231848789 2.21927250855737 2.81308803222162 2.56682071435332 2.38650451143895 2.4346246902043 2.58590722816922 2.79732487875118 2.38675584586737 2.25536084830142 2.53761846739943 3.228071144762 2.21894479205465 2.90417535952866 4.53400099256245 2.51858578888779 2.59258300092335 2.72588064491195 2.30005972731844 0.223488312057942 0.221336271026008 0.223813468228788 0.223210316577831 0.217607674787482 0.222744525633809 0.226388849616743 0.221427474100993 0.236477196527704 0.223197800154842 0.221319223615882 0.227440948665019 0.219900759904287 0.221650897522016 0.248635375258220 0.220354316095821 0.222765532671521 0.224861625776876 0.224895780854958 3 3 - 19998883 19999156 19999040.091 19998557 19999247 - gene protein_coding_gene FALSE TRUE AT3G53980.1|AT3G53980.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to hypothetical protein [Plantago major] (GB:CAH59408.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.348259485139752 3.9525412935661 0.00231033307954612 1 4.09076227390994 5.10948252579358 0.348259485139752 0.057070666273005
AT1G22870_at 5.30340346615179 5.29563251015038 5.90352767264137 5.83461490186815 5.65770161771091 6.23715275772819 5.05169938126736 4.70638042352798 4.46245704693340 4.2105456133045 4.69976095606577 4.17929770344069 4.10157602278988 4.39651747227476 4.30695444122411 4.55593678266193 4.65424540605221 4.29805166746922 4.42380382678169 0.217663156549577 0.204578293997184 0.212375653049948 0.205563280084178 0.213809191349986 0.212783332466939 0.219390837391347 0.206955049891290 0.215464526191382 0.210420496890130 0.210218787146933 0.204197878750541 0.212967806316051 0.207034845361344 0.212015461307737 0.208399057330881 0.21219424576778 0.215791071989875 0.208445598802689 1 1 + 8093563 8094083 8093839 8089490 8094162 + gene protein_coding_gene FALSE TRUE AT1G22870.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71410.1); similar to protein kinase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61275.1); similar to Os01g0616100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043575.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain HEAT; (InterPro:IPR000357) 0.426205343185118 3.95240069928587 0.00231088666023470 1 4.09055297013916 9.88108645079936 0.426205343185118 0.117348183013303
AT2G36590_at 4.20425016814045 5.08613453643299 3.43597461806767 4.01197905278929 5.26104564978055 4.7162998844511 6.69977085884829 6.853344390693 4.69267378870745 5.4061020911309 4.70616087899724 5.94041241797543 4.46681585356648 5.15050511645143 3.94961127040181 5.78851664157019 4.97410200436038 4.37054546559834 4.13446250816618 0.250507054839730 0.247782497559639 0.258196850815979 0.242857952958775 0.255653702801462 0.250709346180821 0.254673330752990 0.247192855619562 0.244044791314500 0.242569768065539 0.247589978197643 0.245343224068194 0.254070522065227 0.242919408002837 0.250625378209124 0.24509102004411 0.25517548334161 0.255542428455274 0.246103102513566 2 2|0 -|/ 15350204 15350756 15350497.111 15350085 15352416 - gene protein_coding_gene FALSE TRUE AT2G36590.1 ProT3 (PROLINE TRANSPORTER 3); amino acid permease Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G39890.2); similar to ProT2 (PROLINE TRANSPORTER 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT3G55740.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93109.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.590314638571439 -3.95239122678762 0.00231092396252951 1 4.09053886826089 9.86497314595875 -0.590314638571439 0.206931262197283
AT4G20410_at 9.54452279869186 9.49806623470101 9.86492464362562 9.81154785239614 10.3241668627715 9.80233358056154 9.54723835776234 9.11353438781625 9.28177519626025 9.23982411983497 9.67582336862024 9.40573885030594 9.62835371259944 9.53830144521068 9.42017335636315 9.39659082432433 9.46331164037047 9.58495547932828 9.0328532406071 0.0858876692572898 0.0823205329414035 0.0900601107096483 0.0852407872590018 0.0849376653266858 0.0817421372966855 0.0877605595255026 0.0833114191009148 0.0920509082807218 0.0873942554418351 0.0819470353563008 0.0823049983900364 0.0855290403750704 0.0850833095297617 0.0852321351193698 0.0817421372966855 0.085969766995041 0.0887692474792704 0.0845214513195704 4 4|0 -|/ 11014171 11015376 11014851.4 11013906 11016587 - gene protein_coding_gene FALSE TRUE AT4G20410.1 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN); intracellular transporter Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family. Identical to Gamma-soluble NSF attachment protein (Gamma-SNAP) (N-ethylmaleimide- sensitive factor attachment protein, gamma) (GSNAP) [Arabidopsis Thaliana] (GB:Q9SPE5;GB:Q9SUN8); similar to ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN), soluble NSF attachment protein [Arabidopsis thaliana] (TAIR:AT3G56190.1); similar to unknown [Solanum tuberosum] (GB:ABA40435.1); similar to Os04g0618500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053892.1); contains InterPro domain NSF attachment protein; (InterPro:IPR000744); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.427120677917687 3.95043391151174 0.00231864523314866 1 4.08762471169849 19.0377786415613 0.427120677917687 0.118060372804986
AT1G09280_at 6.43284605563581 6.64717722428091 5.90200265154369 5.8068183832186 7.12011423993895 6.27512617104001 5.76948492760388 5.79899900901063 6.23338739094286 6.29747654861515 5.08401948684665 5.37099833371884 5.25421119097632 5.59422179834749 5.02298555047941 5.55169138623391 5.63906298543783 5.36419569762903 6.79787605736857 0.238902893247838 0.230766954539502 0.229770941223897 0.232731993158864 0.230406978681262 0.247094262310918 0.225479660247453 0.226115024749864 0.247428124723051 0.23472941307835 0.225479660247453 0.227992091656804 0.229932414423628 0.229671060233158 0.230718068465739 0.225479660247453 0.235761587215784 0.225479660247453 0.225999742686471 1 1 - 2998254 2998780 2998470.545 2998102 3001317 - gene protein_coding_gene FALSE TRUE AT1G09280.1 similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40760.1); similar to Os12g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067036.1); similar to Phospholipase/Carboxylesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98960.2); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Protein of unknown function DUF341; (InterPro:IPR005645) -0.484425735648835 -3.94982910415748 0.00232103651469598 1 4.08672413480018 12.1206144007928 -0.484425735648835 0.151842407702103
AT1G24440_at 8.69390160484802 8.81871550078681 8.98230784396812 9.02838555112306 9.5052166657506 8.98649074886356 8.29589818886046 8.27198217307531 7.53937205282207 7.46177331439706 7.29899492793324 7.45641636172481 8.1712253603082 7.72207516389656 7.1678249205196 7.89106110374703 8.04266616744126 7.78496555669733 7.55402558044826 0.220032551283989 0.219443446484804 0.225448503587778 0.228401021236746 0.221232952778709 0.233625267706171 0.223742929333212 0.215604551380195 0.236166367973858 0.223560995150452 0.224826841204475 0.220267334783775 0.216472526376563 0.238519340757253 0.225005363099979 0.218307500293169 0.236217267914347 0.237310962545192 0.223475593135800 1 1|0 +|/ 8662980 8663731 8663403.8 8662007 8663952 + gene protein_coding_gene FALSE TRUE AT1G24440.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G13195.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE84624.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.38949460746403 3.94870463980122 0.0023254892289159 1 4.08504963823366 16.4280092902458 0.38949460746403 0.0927660516256874
AT1G20920_at 5.90808337620058 5.6658755527999 6.12490074495654 6.15097028123849 6.02650305946283 6.12326452436892 5.50913232724429 5.72208889247938 5.40837675528601 5.21622992649241 5.59982457649353 5.75651017381442 5.94571903393456 5.3575478567977 5.08796984024189 5.91861620618853 6.09592049076084 5.90223446157037 5.61963500082871 0.185657289195355 0.176056070695511 0.179535333344169 0.179829073901322 0.177703158024035 0.175707465814382 0.178984120221597 0.181644121197299 0.183836433970177 0.179974759235767 0.178024577943846 0.177411160755888 0.176923039711866 0.180952089075404 0.177464526233440 0.172686203049017 0.177337050218358 0.178215438321002 0.173859371588509 1 1 + 7288270 7288804 7288551.273 7285048 7289767 + gene protein_coding_gene FALSE TRUE AT1G20920.1|AT1G20920.2 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.1.-) (RH42) [Arabidopsis Thaliana] (GB:Q8H0U8;GB:Q9SYP6); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G09620.1); similar to KIAA0801 protein [Homo sapiens] (GB:BAA34521.2); similar to Probable ATP-dependent RNA helicase DDX46 (DEAD box protein 46) (GB:Q569Z5); similar to RNA helicase [Rattus norve (GB:NP_620798.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629)|Identical to DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.1.-) (RH42) [Arabidopsis Thaliana] (GB:Q8H0U8;GB:Q9SYP6); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G09620.1); similar to Probable ATP-dependent RNA helicase DDX46 (DEAD box protein 46) (GB:Q569Z5); similar to RNA helicase [Rattus norve (GB:NP_620798.1); similar to PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus] (GB:XP_001000956.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.349205108882589 3.94846335740275 0.00232644582866065 1 4.0846903097006 11.4652473735993 0.349205108882589 0.058444720974727
AT4G36970_at 6.598808533018 6.95563521777754 5.26560076167812 5.29540886774893 4.99964985060081 5.13240538116208 4.51551144056197 4.83159951378746 4.92473140910426 5.37828786880691 4.98535456569949 5.76609681741523 4.45381818869908 4.78266122962736 5.97646552765301 4.85781896005987 4.60420816633044 4.93637684983590 5.45711606831884 0.278907087796243 0.27968945677351 0.275277670110826 0.275279696109239 0.271712136572086 0.281431297583715 0.27847924791381 0.281223566299931 0.284245809135007 0.276028387235688 0.275517214800621 0.273638201890342 0.279864955249821 0.277493367912965 0.271712136572086 0.271712136572086 0.298930479059744 0.282082508724874 0.275503293057414 4 4|0 -|/ 17429838 17430533 17430169.4 17429739 17431680 - gene protein_coding_gene FALSE TRUE AT4G36970.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT1G45207.2); similar to Remorin, C-terminal re (GB:ABE89592.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) -0.38007543578352 -3.94723415385603 0.0023313255429291 1 4.08285960011561 10.5986916892461 -0.38007543578352 0.0857886108916992
AT1G47370_at 2.56320655629378 2.58775657407817 2.47874313616053 2.69280981455782 1.95542036423062 2.04920965731946 3.1079044830781 2.91848441590927 2.87978112821276 3.08239216455438 2.95445782090455 2.36667045915124 2.74740298122045 2.77440480931845 3.05183253028593 2.48327527224863 3.17486105809904 2.65308147549259 2.92443190486921 0.247590239333903 0.249669778252391 0.232200454843431 0.242633745547408 0.237282156155715 0.238770776052346 0.260862016110148 0.242090561537069 0.253395063644250 0.237899326315908 0.230513959036664 0.236224343967530 0.232725330311918 0.235083555168561 0.235845380165244 0.229476594745603 0.235970759971686 0.242712471752225 0.229821522969196 1 1|0 -|/ 17368420 17369453 17368846.25 17368338 17371143 - gene protein_coding_gene FALSE TRUE AT1G47370.1 Toll-Interleukin-Resistance (TIR) domain-containing protein similar to Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03030.1); similar to Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03300.1); similar to TIR [Medicago truncatula] (GB:ABD33387.1); similar to TIR; Disease resistance protein [Medicago truncatula] (GB:ABE81927.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) -0.343372847989031 -3.94679708114481 0.00233306320553467 1 4.08220859731729 5.41316689189625 -0.343372847989031 0.0522337458383324
AT3G15580_at 11.2781197541955 11.3548948776884 11.6701402744493 11.7747521425311 11.7546965198516 11.5532685741499 11.1127251394374 11.1194484748227 11.0270521901705 10.9164842654177 11.3024408430441 10.9415718904122 11.3153622769139 11.1872604747179 10.9869719048347 11.2457943826777 11.0901906512932 11.1215482325698 10.9099709837106 0.0874017590571468 0.0866136827331997 0.092922723368481 0.0875041945779208 0.0866136827331997 0.0910756520424118 0.0866136827331997 0.088049022965558 0.100857946963730 0.0866136827331997 0.0911213348561563 0.0866136827331997 0.0866136827331997 0.0874365350506992 0.0917987632458706 0.0872392814980835 0.0933302007309339 0.0886951276293664 0.0872687404074176 3 0|3 /|- 5274102 5274836 5274364 5273902 5275102 - gene protein_coding_gene FALSE TRUE AT3G15580.1 APG8H (autophagy 8H); microtubule binding Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. similar to ATG8H (AUTOPHAGY 8H), microtubule binding [Arabidopsis thaliana] (TAIR:AT3G06420.1); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE82404.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.334820375917243 3.94626854648975 0.00233516629066903 1 4.08142133032477 22.5022865838862 0.334820375917243 0.0414813448096391
AT4G24820_at 9.78342893731545 9.76743855515153 10.2066486716693 10.1529430772511 10.1241995763662 9.94636136990903 9.90304602291823 9.37863403915267 9.43800929085217 9.4095681210478 9.93142137256928 9.85313216650819 9.53144456298023 9.57750175078668 9.66161719545548 9.58882051567555 9.57029675953707 9.63072429606905 8.9903447678961 0.0974439795334434 0.0924275401950717 0.0969957029377792 0.0930606345581853 0.0942851334697111 0.0938513677702064 0.092984481565193 0.103247292003792 0.0999079646910072 0.0965778275355625 0.093917027859867 0.0938005788320218 0.0976735926142902 0.0958843383901341 0.101039659559038 0.0922523319900193 0.0924723452376139 0.099290048619262 0.102297537489982 4 4|0 -|/ 12790484 12791398 12791058.556 12789040 12792732 - gene protein_coding_gene FALSE TRUE AT4G24820.1|AT4G24820.2 26S proteasome regulatory subunit, putative (RPN7) Identical to Probable 26S proteasome non-ATPase regulatory subunit 6 [Arabidopsis Thaliana] (GB:Q93Y35;GB:Q9SZX2); similar to FUS6 (FUSCA 6) [Arabidopsis thaliana] (TAIR:AT3G61140.1); similar to 26S proteasome subunit RPN7 [Capsicum annuum] (GB:ABK42076.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.394106859673377 3.94571962399999 0.00233735258728653 1 4.0806036543222 19.3815511415732 0.394106859673377 0.0963176832539323
AT1G54030_at 8.45067411504445 8.56414566305204 7.75508644514787 7.61071814624588 8.09378064139853 7.51512128970918 7.64994854828555 7.49977661698775 8.10779470755201 7.49800961744033 7.28652679109365 7.86966984235849 7.45061202092545 7.49095140978307 7.49732372026682 7.15302181386704 6.35690875768283 7.19098013695316 7.83106983677192 0.163283130902304 0.162123092203658 0.164957781233652 0.171884217792501 0.165894871054705 0.167260949812159 0.160175046229160 0.165278631020643 0.174343482945044 0.170273294042610 0.166466924827502 0.161212776213102 0.158239586997272 0.173371045536500 0.162270607858992 0.169766594531655 0.176516281224907 0.168619793996875 0.161327356468453 1 1 + 20172475 20173020 20172768.545 20171297 20173268 + gene protein_coding_gene FALSE TRUE AT1G54030.1 GDSL-motif lipase, putative similar to ESM1 (EPITHIOSPECIFIER MODIFIER 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G14210.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.411375840427759 -3.94534712482192 0.00233883742160105 1 4.08004875517473 15.4420517826694 -0.411375840427759 0.108227154297504
AT4G37280_at 5.79138008540048 5.87213349248455 4.83567439819459 5.3652548267729 5.9823445216535 5.71554380422127 6.21600827522339 5.69499510408005 5.70632906136837 6.43480064492766 6.15554543622356 6.00275132554232 5.46257886044054 5.62016415778789 5.88233884418051 5.76753322003604 5.70377645298177 5.2896504240282 6.55750522639473 0.179909314363695 0.187932745509641 0.195768558736899 0.196449444507752 0.180884159116862 0.18562822248007 0.179909314363695 0.181953636344779 0.193231006360869 0.193517873574282 0.183405771437827 0.196598988052876 0.194118046154715 0.187961045164546 0.183353007028039 0.18166036593196 0.183718318127830 0.201775159719668 0.188472857556748 4 0|4 /|- 17546797 17547662 17547201.889 17546578 17549418 - gene protein_coding_gene FALSE TRUE AT4G37280.1 MRG family protein similar to chromatin binding [Arabidopsis thaliana] (TAIR:AT1G02740.1); similar to MRG family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94215.2); contains InterPro domain MRG; (InterPro:IPR008676); contains InterPro domain Chromo; (InterPro:IPR000953) -0.458130411165432 -3.94331051538566 0.00234697298982105 1 4.07701455060327 11.6683771390286 -0.458130411165432 0.137315783223766
AT3G10310_at 0.872265520932883 0.835986320734743 1.30910392590490 0.99432998342707 1.18258390524302 1.35996568873596 1.24824254684876 1.16037261252480 1.32211240622693 1.20893403635804 2.14327444845946 1.76374298378686 1.21908931739934 1.57245423319115 1.95084690729136 1.81969581155480 1.87282475682696 2.39508863965789 1.41320815618609 0.179071879284316 0.181941688810222 0.174054534769554 0.172050903170831 0.174526312778960 0.169776210819381 0.18125743903069 0.171034114809681 0.173854250791855 0.177360042459658 0.177296994665456 0.172133738566564 0.169844493737764 0.174534120211896 0.173688750677352 0.174857855864722 0.169776210819381 0.179893916289831 0.17069922415715 3 3 + 3194395 3194973 3194652.727 3190213 3195010 + gene protein_coding_gene FALSE TRUE AT3G10310.1 kinesin motor protein-related similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to Kinesin-4, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95490.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) 0.354827364957366 3.94184622586718 0.00235284050886899 1 4.07483265339089 2.69879564814135 0.354827364957366 0.0646549079244424
AT2G29070_at 3.6259217242312 3.88559975159103 4.18325112260676 4.27667079003937 3.83439419316319 3.62105944208492 2.94136028551699 2.98786031710792 2.68452888894535 2.74241570775077 2.43298896001926 2.642873526003 2.81253996048628 3.01079315058768 2.41822073580026 2.73712418712272 2.78460917916248 2.55435351388492 2.34585638740572 0.231207775724 0.241559864479771 0.235888452744634 0.242287592396864 0.238624490382327 0.231155265998414 0.22932905388615 0.231141831990456 0.232253039276888 0.230847863786936 0.233150807886201 0.231897716838312 0.234295426307527 0.232262710875552 0.235744346489031 0.228582365581067 0.242187246172712 0.229578426935987 0.232123483971617 2 0|2 /|+ 12495667 12496386 12495971.667 12494351 12496536 + gene protein_coding_gene FALSE TRUE AT2G29070.1|AT2G29070.2 ubiquitin fusion degradation UFD1 family protein similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.3); similar to ubiquitin fusion degradation protein [Triticum aestivum] (GB:AAS98216.1); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) 0.350956303813912 3.94124065131168 0.00235527154733911 1 4.07393021734018 6.30207548479298 0.350956303813912 0.0608980028577376
AT4G11530_at 3.52657757393309 3.29069313224884 2.48269181579298 2.19201982172768 3.02169664922472 2.75971780105347 2.17378182858045 2.39832197630385 3.58833208109723 2.64199097693622 2.49020199182835 3.23336332515382 2.38655147091358 3.34468685396527 2.58600896158821 2.47796379985675 2.66348547441411 2.31211346043015 3.42490292123926 0.210597992356051 0.201446111480912 0.203627970553532 0.199507503307882 0.197550333706062 0.212523986027992 0.197550333706062 0.205006465569103 0.201517918538487 0.204252127531682 0.211139931480132 0.201927182541511 0.197550333706062 0.203033183731006 0.201240048160212 0.199760818817072 0.200973030712121 0.213866576909038 0.205679644504154 4 4|0 +|/ 6989067 6989567 6989418.2 6985617 6989593 + gene protein_coding_gene FALSE TRUE AT4G11530.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23300.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.382461924152817 -3.94071425749948 0.00235738684130988 1 4.0731457366349 5.68329036337131 -0.382461924152817 0.0881021400181812
AT1G33330_at 6.18601260419372 6.5617271394134 6.03828605967569 5.82455323299715 5.85550772559282 5.98440686482362 6.33948101497181 7.19410379018184 6.90505444208864 6.5294498225381 6.44167313438344 6.44518012357579 6.19791032590885 6.69521300474668 5.95026027880061 6.69306821996608 5.63762195869497 6.46173744470136 6.6459079264033 0.233760357961295 0.224453588625598 0.242680931761281 0.243429119568914 0.229946963665530 0.232980117051946 0.231796699282541 0.243160066258771 0.247878137019389 0.227654095238534 0.226799008155329 0.227320239712079 0.225017630804901 0.233767077652970 0.228682587544646 0.224453588625598 0.252295608919732 0.241845953670915 0.232025003919631 1 1|0 +|/ 12085266 12085894 12085583 12084931 12086508 + gene protein_coding_gene FALSE TRUE AT1G33330.1 peptide chain release factor, putative similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT1G56350.1); similar to Class I peptide chain release factor; Helix-turn-helix, Fis-type [Medicago truncatula] (GB:ABE88459.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352); contains InterPro domain Peptide chain release factor 2; (InterPro:IPR004374) -0.511390167706998 -3.93997273175605 0.00236036998588201 1 4.07204058184515 12.7524116998265 -0.511390167706998 0.167231901467981
AT1G09440_at 3.54610396277076 3.50982206425609 3.07470588263508 3.71764350680327 3.12750149583209 3.75422921030412 4.60428126343321 4.92638789020895 4.86316324828666 4.69611858702279 4.57453673106019 4.15466644953954 4.79241295269449 4.3129065582229 4.33171200312322 4.38510913786301 4.66114553138878 3.91520179158092 4.47451583598763 0.230253424403196 0.225609275854136 0.229636628215972 0.23709513340848 0.229486086512900 0.232827614624092 0.226178316596456 0.221318019374384 0.228092628944645 0.233093141705675 0.22692703635717 0.234708121276629 0.227015570053523 0.229024985005251 0.24239530495598 0.228455891890020 0.238962487710725 0.233734279123938 0.227152582859990 1 1 - 3045579 3046233 3045912.2 3045515 3047395 - gene protein_coding_gene FALSE TRUE AT1G09440.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G56720.3); similar to putative receptor-like protein kinase 3 [Glycine max] (GB:AAU10525.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.507549966969252 -3.93960232250437 0.00236186160496043 1 4.07148850318813 8.31703138529702 -0.507549966969252 0.165194747177204
AT2G43940_at 6.33547019930263 7.06940694308796 7.0881232592303 6.66704109681295 7.00253416178473 6.89197295937757 5.74070958272427 6.05135075089101 4.99824475977748 4.78612767894317 4.43965059310344 4.4759522885573 5.21096843159037 5.4810988504214 5.30035686925882 5.09482547105529 5.86925035781548 5.52898764126999 4.62421690448398 0.326785830265604 0.336837316802924 0.337381147702525 0.330842498717951 0.336820579289670 0.344508740651813 0.326785830265604 0.326785830265604 0.336363337548463 0.341026635626248 0.33671794901778 0.329335608988543 0.326785830265604 0.326785830265604 0.340955385450386 0.333058596363755 0.338250945133574 0.326785830265604 0.340719456821715 2 2 - 18204123 18204735 18204472.571 18203029 18204763 - gene protein_coding_gene FALSE TRUE AT2G43940.1 thiol methyltransferase, putative similar to thiol methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G43910.1); similar to thiol methyltransferase 1 [Brassica oleracea] (GB:AAK69760.1); similar to Os06g0153900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056843.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Thiopurine S-methyltransferase; (InterPro:IPR008854) 0.492728349391193 3.93927318080965 0.00236318786386824 1 4.07099791619417 11.5948258327942 0.492728349391193 0.157155650613236
AT1G64970_at 9.15714150378288 9.50087383018952 9.85906918222714 10.1944251709303 9.53646911905877 9.37324651729854 10.5926730745732 10.6389638145484 8.59193195802793 9.72785410417806 8.01625143512353 7.87227147492461 9.11380787584189 8.8035377374464 7.54243042257504 9.08995761866538 9.41677504386204 8.87563183834637 9.05325948855873 0.193679558239391 0.192603635226452 0.198437155473901 0.198364685407297 0.192603635226452 0.196428951465652 0.194975602956577 0.192603635226452 0.216493240279535 0.198588474849501 0.205898847412097 0.201009277877505 0.192603635226452 0.193589594653627 0.201933039940702 0.192603635226452 0.199413042726986 0.198581565856078 0.197882117480197 1 1|0 -|/ 24138003 24138729 24138360.2 24137748 24139772 - gene protein_coding_gene FALSE TRUE AT1G64970.1 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves Identical to Tocopherol O-methyltransferase, chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (G-TMT) [Arabidopsis Thaliana] (GB:Q9ZSK1;GB:Q9XIP9); similar to phosphoethanolamine N-methyltransferase 3, putative (NMT3) [Arabidopsis thaliana] (TAIR:AT1G73600.1); similar to SMT2 (STEROL METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT1G20330.1); similar to gamma-tocopherol methyltransferase [Brassica oleracea] (GB:AAO13806.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.382313072234118 -3.93868082287476 0.00236557668921974 1 4.07011496688231 18.7144485004610 -0.382313072234118 0.0881390358156313
AT4G31840_at 3.42030341307823 3.49416257981624 2.31064855518863 2.34155689424490 2.16290683952253 2.12001153042294 3.20950580423407 3.60991302250631 3.12013998953249 3.6497322002098 3.37425948121059 5.08532370748923 3.83610891259602 3.75186321993576 4.50153648883944 3.50545018731545 3.85407505803526 3.6713907693845 3.64228201355062 0.242029995804925 0.248663884778611 0.248803635573073 0.246296428105198 0.252324518398131 0.251319681407694 0.242029995804925 0.251518587326259 0.255260552421088 0.245737793964774 0.248938850275254 0.253369901090251 0.244597036716650 0.248842917706806 0.258263614101658 0.242029995804925 0.251278082454619 0.255025983090067 0.248531677563553 4 4 + 15401852 15402407 15402168.727 15401646 15402623 + gene protein_coding_gene FALSE TRUE AT4G31840.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25060.1); similar to Blue (type 1) copper domain [Medicago truncatula] (GB:ABE93906.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.361453669863742 -3.93863460789791 0.00236576316771352 1 4.07004607832775 6.54273560280927 -0.361453669863742 0.0710528920890483
AT2G34150_at 1.42365327568713 2.01678321538405 1.23980754953555 1.08935685675381 1.24893323306866 1.18071845910432 2.00558168894518 1.75084570827649 1.74004407417924 1.85105291508578 1.27056631666257 2.09972132720758 1.59374699696960 1.12215003685031 2.28266469894688 1.83610101687914 1.51912893767334 1.47966356918218 2.06086648016365 0.247971801191318 0.253414149743530 0.259478416709644 0.254281114010484 0.249344183383436 0.250107100039990 0.240708526600199 0.246646764166311 0.253128115880637 0.248390961482287 0.240771431593033 0.248211859519979 0.254460520740350 0.24326092308208 0.244347931694967 0.244965432530036 0.250403181546288 0.253621405544913 0.245717855969012 2 2 - 14427343 14427817 14427570.091 14426374 14430557 - gene protein_coding_gene FALSE TRUE AT2G34150.1|AT2G34150.2 WAVE1 (WASP (Wiskott-Aldrich syndrome protein)-family verprolin homologous protein 1) putative WAVE homolog Identical to Protein SCAR1 (AtSCAR1) (Protein WAVE1) (SCAR1) [Arabidopsis Thaliana] (GB:Q6AWX6;GB:O22968;GB:Q56WS5;GB:Q5XPJ7;GB:Q84WP7); similar to WAVE2 (WASP (Wiskott-Aldrich syndrome protein)-family verprolin homologous protein 2) [Arabidopsis thaliana] (TAIR:AT1G29170.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79092.1) -0.421515954027031 -3.93855014398332 0.00236610402103397 1 4.06992017472696 3.26168784118907 -0.421515954027031 0.115309766599408
AT3G56270_at 1.86935621868552 2.14891870818824 1.99293714902157 1.90644193862421 1.37199361961989 1.79457489628841 2.61369163376475 2.72914143280313 2.84344280780618 2.48407202533455 2.29183514734425 3.04885485991369 2.10766264233505 2.27195299498998 2.68120199425127 2.68698900564416 2.46584115297502 2.46050862494788 2.77357555941525 0.202186341937530 0.200757912956456 0.199489716918310 0.207484107238781 0.203961922587484 0.205359651304175 0.20123991040251 0.199489716918310 0.199489716918310 0.201934847899899 0.200473412624883 0.20224821204827 0.199489716918310 0.2044989157726 0.204607912832277 0.202137311751041 0.21164241604019 0.199489716918310 0.203500262387506 3 3 + 20882309 20882791 20882606.636 20880979 20883028 + gene protein_coding_gene FALSE TRUE AT3G56270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40480.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88908.1); similar to Os07g0677900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060633.1); similar to Os03g0339700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050061.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) -0.386148879428527 -3.93669550739924 0.00237360126949765 1 4.06715536961185 4.65449158311721 -0.386148879428527 0.0911688035171801
AT1G51340_at 2.47981754697618 2.51490682553172 4.09702576160585 3.88398086901561 3.86504621886413 3.25463662919063 4.50475765128089 3.47867585531368 1.718779499578 2.32172692183361 2.30160117019761 1.89201626197750 2.77186310480652 2.71224536357987 1.46112333876516 2.73601792621213 3.67720220860269 2.65077444300505 1.56547744648448 0.260837658754208 0.247867578633361 0.245913073546395 0.256799470166448 0.248275094414494 0.250303215210562 0.251251734249596 0.251724999973843 0.268844557526410 0.251710595806304 0.24685157568097 0.250838003430191 0.251023912701049 0.253309761949037 0.247136749602629 0.247416593556733 0.263619154118636 0.256892586722305 0.244609855692463 1 1|0 +|/ 19036452 19037356 19036851.8 19035665 19038647 + gene protein_coding_gene FALSE TRUE AT1G51340.1|AT1G51340.2 MATE efflux family protein similar to FRD3 (FERRIC REDUCTASE DEFECTIVE 3), antiporter [Arabidopsis thaliana] (TAIR:AT3G08040.1); similar to Os03g0216700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049386.1); similar to Os10g0206800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064314.1); similar to MATE efflux family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94649.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.59366354386903 3.93403035477736 0.00238441823969045 1 4.06318145958606 5.70686430294334 0.59366354386903 0.209964814037957
AT4G36380_at 2.21732653435581 2.66793218231310 3.5938900694268 3.79930978779474 4.25780500462963 3.93720425592111 4.06487613099351 3.84545187432968 2.65628005532424 2.96548845257836 2.74039928403367 2.350928775036 2.90480569898415 3.07681794049833 2.56116872352427 2.8316368154498 3.59618087113647 3.20407370415736 2.7300750391439 0.239628757379366 0.23180289282697 0.230813858112643 0.231249445993947 0.240387990527800 0.258151463692225 0.230303062391075 0.239116279287222 0.231310762696981 0.232064564530592 0.235061072827364 0.233217739735459 0.232752215603958 0.230303062391075 0.237880321355235 0.230303062391075 0.243083046629489 0.236833420242267 0.230303062391075 4 4|0 -|/ 17187991 17189731 17188649.889 17187531 17192320 - gene protein_coding_gene FALSE TRUE AT4G36380.1 ROT3 (ROTUNDIFOLIA 3); oxygen binding / steroid hydroxylase Encodes a cytochrome P-450 gene that is involved in leaf blade expansion by controlling polar cell expansion in the leaf length direction. Member of the CYP90C CYP450 family. ROT3 was shown to be involved in brassinosteroid biosynthesis, most likely in the conversion step of typhasterol (TY) to castasterone (CS). As 6-deoxo-CS was unable to restore the phenotype of rot3-1, it has been postulated that ROT3 might be specifically involved in the conversion of TY to CS in the C6-oxidation pathway of brassinolide. Recently, CYP90C1 was shown to catalyse the C-23 hydroxylation of several brassinosteroids (the enzyme has a broad specificity for 22-hydroxylated substrates). Identical to Cytochrome P450 90C1 (EC 1.14.-.-) (ROTUNDIFOLIA3) (ROT3) [Arabidopsis Thaliana] (GB:Q9M066;GB:O23242); similar to CYP90D1 (CYTOCHROME P450, FAMILY 90, SUBFAMILY D, POLYPEPTIDE 1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding [Arabidopsis thaliana] (TAIR:AT3G13730.1); similar to putative cytochrome P450 [Oryza sativa (japonica cultivar-group)] (GB:AAT44310.1); similar to Os01g0197100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042297.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) 0.411229613266027 3.9338826593505 0.00238501918272057 1 4.06296120797347 6.39407414277955 0.411229613266027 0.1089247564289
AT4G34230_at 7.4004359324345 7.72247641860702 8.29769908284063 8.30748645649991 7.80983134159052 7.41222447292865 7.90432687232376 8.08428683663873 6.25681296002825 6.84325711335265 6.71863678216326 6.68397631756011 7.48955205565358 7.23054894451888 6.12520126906205 6.46335819753935 7.55204976029392 7.11291933546144 5.86551786885854 0.224862757646642 0.223869166919185 0.238552640905119 0.2402565832821 0.227390735899436 0.23826718380625 0.231918661926228 0.231481989189075 0.23583200585567 0.227673308163525 0.227809538290195 0.229653998844889 0.223131458732952 0.22264653132039 0.22264653132039 0.224819979880746 0.234751908273354 0.232100713382458 0.232604146335103 4 4|0 -|/ 16386928 16387562 16387295.3 16386723 16388726 - gene protein_coding_gene FALSE TRUE AT4G34230.1|AT4G34230.2 CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase|CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. Identical to Probable cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) [Arabidopsis Thaliana] (GB:O49482); similar to CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G19450.1); similar to cinnamyl alcohol dehydrogenase [Ocimum basilicum] (GB:AAX83108.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.389548254416175 3.93384977289272 0.00238515301253882 1 4.06291216545708 14.4892924168303 0.389548254416175 0.0938783953985137
AT2G45290_at 1.88836835601651 1.58923047860566 2.03119647677703 2.02206004574862 1.48498842771792 1.55440142593817 1.60916470618968 2.1497751703257 1.71924715450666 1.74848443609761 2.5675597064282 2.99660793226856 2.33819209059215 2.75950105477584 2.6076434568506 2.42710129129186 2.31609305956855 2.67237346263035 1.72595198355429 0.178158534591712 0.180011215454906 0.176836958405211 0.182939834656167 0.185189176427836 0.182700572553307 0.178022028342682 0.179161423656082 0.188877414674359 0.178470734816858 0.173619029664234 0.173619029664234 0.181274323735731 0.178569167838491 0.179386606562524 0.173619029664234 0.188521080396423 0.18293599398375 0.175334897287107 2 2 + 18682096 18682637 18682296.909 18679756 18682980 + gene protein_coding_gene FALSE TRUE AT2G45290.1 transketolase, putative similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT3G60750.1); similar to transketolase 1 [Capsicum annuum] (GB:CAA75777.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to Transketolase, C-terminal-like [Medicago truncatula] (GB:ABE91345.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Bacterial transketolase; (InterPro:IPR005478); contains InterPro domain Transketolase, N-terminal; (InterPro:IPR005474) 0.409216532504479 3.93355348782270 0.00238635908199517 1 4.0624703183902 3.94957906834172 0.409216532504479 0.107606717823718
AT4G31890_at 2.20103242915407 2.50458460134496 1.94175788214339 1.83697303763020 1.75619280631091 2.07435865980701 2.29763706453020 2.66737164159325 3.05033144271878 2.4222878630940 2.51560111095128 2.88113860231983 2.36774235511741 1.99542645481788 3.03027639494905 2.44536165131412 2.21252453208308 2.91080841847724 3.01312214540130 0.239092222562978 0.232506650388206 0.249854681369755 0.237699299100943 0.237501428035044 0.232627841113391 0.245802266816724 0.238776822046852 0.240245277073209 0.252618760362823 0.241339764370826 0.232518970493733 0.231739903967523 0.232194774982600 0.243425744478304 0.243126173356115 0.23802655827771 0.231739903967523 0.240314805328127 4 4 - 15427302 15427832 15427620.909 15426298 15429113 - gene protein_coding_gene FALSE TRUE AT4G31890.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25130.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE79259.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.399528190708515 -3.93269307646902 0.00238986510002792 1 4.06118712714114 4.84670872718513 -0.399528190708515 0.101064064818798
AT3G60600_at 10.7047542698938 10.8039343328917 10.8797505035712 10.7758616668981 11.2997268867507 11.1164608045400 10.4697509816547 10.2717286905158 10.3965957043940 10.3895083941136 10.8431334682105 10.6700266499668 10.6385006435068 10.6211583202935 10.6352365510797 10.6600017043726 10.5256018807005 10.5288991026692 10.4449028648285 0.0923636276775141 0.0885173904419008 0.0896634086837403 0.0934502669621186 0.0904020702110305 0.0925247840505657 0.0888394219628865 0.0903653531246843 0.0985072329285836 0.0939694793397719 0.0897279430273826 0.0885173904419008 0.0912962266776271 0.0945478688826333 0.0928160216699493 0.0885173904419008 0.0971731741137681 0.0894235690543298 0.089738209941544 3 3|0 +|/ 22411895 22413335 22412540.3 22411370 22413678 + gene protein_coding_gene FALSE TRUE AT3G60600.1|AT3G60600.2|AT3G60600.3 VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1); protein binding|VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1) Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. similar to vesicle-associated membrane protein, putative / VAMP, putative [Arabidopsis thaliana] (TAIR:AT2G45140.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.342696016177782 3.93237339407969 0.00239116911066288 1 4.06071033677083 21.3155737393622 0.342696016177782 0.052896121902205
AT3G60820_at 10.5682662609579 10.6961232298208 10.8793770605822 10.9804551419430 10.8096675220784 10.6451554531358 10.5664992621220 10.5442598051484 10.0888800925844 9.9354754796254 10.3502815340934 10.5054226416091 10.3475890400692 10.3588894767396 10.1512222691902 10.3488152483904 10.4743277965422 10.4930679265243 9.81964888150448 0.121073882924445 0.112208741518356 0.116967283678203 0.117243206043061 0.116021053730997 0.118145494153529 0.119882709421583 0.117251288855790 0.117769577794233 0.118430135741060 0.121968278549547 0.116853805837158 0.118845554415699 0.115157770097929 0.124925341955314 0.112208741518356 0.123541631203462 0.114803229907658 0.116886331484804 3 3 - 22483307 22484536 22483793.455 22482744 22484914 - gene protein_coding_gene FALSE TRUE AT3G60820.1|AT3G60820.2 PBF1 (20S proteasome beta subunit F1); peptidase Encodes 20S proteasome beta subunit PBF1 (PBF1). Identical to Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome subunit beta type 6) (20S proteasome beta subunit F-1) (TAS-G39.20) (TAS- F22/FAFP98) (Proteasome component C5) (PBF1) [Arabidopsis Thaliana] (GB:P42742;GB:P42741;GB:Q570C3;GB:Q6LAD2;GB:Q9SBI6); similar to PBC1 (20S proteasome beta subunit C1), peptidase [Arabidopsis thaliana] (TAIR:AT1G21720.1); similar to 20S proteasome, A and B subunits [Medicago truncatula] (GB:ABE90866.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.332788580997984 3.93235776391134 0.00239123288635774 1 4.06068702479437 20.8745772050817 0.332788580997984 0.0402600423828633
AT4G19380_at 1.47359505480213 1.58964592590682 1.48698739328396 1.07005040694944 0.990758652325957 1.09660925444180 1.19081818446274 1.65921565146008 1.66407943533374 2.02874350299533 1.35866175077439 1.68997182941943 1.37362577158982 1.23445802179072 1.5923101560476 1.33971840193356 1.42560596572763 1.34846158372283 2.10977256608144 0.225466638343269 0.215375961202181 0.223254500992221 0.216157294522612 0.214179801625864 0.215176067877507 0.213576516900400 0.22293830665511 0.23517851105413 0.226397666645912 0.215997334327657 0.212625597254894 0.218764790489483 0.223241232172515 0.223188138672732 0.217209926560848 0.226841618788357 0.214672436468949 0.218314237124459 4 4 - 10568481 10569010 10568775 10568376 10572423 - gene protein_coding_gene FALSE TRUE AT4G19380.1 alcohol oxidase-related similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT4G28570.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31024.1); similar to Os02g0621800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047464.1); similar to Os10g0474100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064836.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172) -0.41553204687604 -3.93223063085658 0.00239175169237546 1 4.06049740801525 2.99698515875207 -0.41553204687604 0.111872149773170
AT2G42400_at 5.61733664936114 5.48156547151531 5.04300578640774 5.81591002905497 5.28358080816284 5.80130222216328 4.49846604530304 4.91868451300044 4.41621829078536 4.31759059849411 5.04031857727571 5.43981214173752 5.55163210415296 5.61914707992536 4.89002057993387 5.2480014742208 5.42016299675855 4.27646179810687 4.70773932999106 0.274895928078425 0.27268589000432 0.290079243862173 0.270083883765402 0.279343254160812 0.297203666909273 0.278836816975469 0.269501981768989 0.312341043099197 0.274200374755966 0.271218900073088 0.273626414276571 0.271900914339402 0.275579698948501 0.28195115969352 0.271160426232608 0.279451551060491 0.283192044466856 0.269550766503007 2 2|0 -|/ 17661595 17662258 17661931.222 17661310 17663916 - gene protein_coding_gene FALSE TRUE AT2G42400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28520.2); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105) 0.531057531288001 3.9320833245382 0.00239235296798259 1 4.06027770039381 10.1405867741732 0.531057531288001 0.178207135651269
AT1G77300_at 4.74868409153875 4.85551570472122 5.05124012859018 5.2620979253354 5.62604042978347 5.79242218372931 5.7372527213013 5.42603438222367 4.03922024308214 3.75637197241579 3.99829996330791 3.97112050727896 4.50386565162018 4.52602617110905 4.33223468006561 4.53398166306267 4.11733102977738 4.68524548990166 3.74697442791161 0.273111803032740 0.260400955123327 0.272808166282568 0.268241934412128 0.267142485137894 0.275725987544371 0.272128015475014 0.268154428009893 0.27409862708335 0.274257641858583 0.263241688739461 0.259883206074557 0.275484685331959 0.259883206074557 0.263553256284635 0.259883206074557 0.284785021471274 0.270602052404357 0.270499310622661 1 1 - 29047576 29048024 29047810.091 29044816 29053704 - gene protein_coding_gene FALSE TRUE AT1G77300.1|AT1G77300.2 EFS (EARLY FLOWERING IN SHORT DAYS) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. Identical to Histone-lysine N-methyltransferase ASHH2 (EC 2.1.1.43) (H3-K4-HMTase) (H3-K36-HMTase) (Histone H3-K36 methyltransferase 8) (ASH1 homolog 2) (Protein EARLY FLOWERING IN SHORT DAYS) (Protein SET DOMAIN GROUP 8) (ASHH2) [Arabidopsis Thaliana] (GB:Q2LAE1;GB:O80663;GB:Q56WW4); similar to SET domain-containing protein (ASHH1) [Arabidopsis thaliana] (TAIR:AT1G76710.2); similar to hypothetical protein [Nannochloris bacillaris] (GB:BAD42330.1); similar to Os02g0554000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047114.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124) 0.363534685979469 3.93101399578408 0.00239672247114307 1 4.05868270582408 9.40292862539555 0.363534685979469 0.0735052096801865
AT2G40530_at 2.4830063960755 2.89662998054474 2.12908753394801 1.89209998169628 2.14331374331526 2.30583740208765 2.42623676015814 2.06753515228130 1.81320844511726 1.71190833759022 3.25614687647489 3.56568481877456 2.65026853435398 3.21142509566056 3.07529209207614 3.05448873018903 2.77596942891559 3.10179961245425 2.23365480330110 0.208127114327870 0.207936029657363 0.212607106496846 0.204910288686821 0.203399391484141 0.2086861753203 0.203399391484141 0.206132281061454 0.214278250557191 0.219047629034438 0.20695798425063 0.208377146522714 0.209624569049288 0.214118215822119 0.205765517877603 0.203399391484141 0.222794515732895 0.215691458369560 0.214795033457151 2 2 + 16934697 16934956 16934802.091 16934580 16935274 + gene protein_coding_gene FALSE TRUE AT2G40530.1 unknown protein 0.408013231469865 3.93062561462866 0.00239831153115151 1 4.05810336368638 4.79595583240431 0.408013231469865 0.107004381434278
AT1G53590_at 6.97376161092048 6.9799517897755 6.65729096326344 6.60904643105079 7.48427706444608 7.03507191980309 6.37155911485547 6.60489296410416 6.21034043151141 6.59546310963237 7.30781985042596 7.33700771596076 6.79549061876596 7.78873599143227 6.7569867587705 6.96414752962582 6.46474848418135 6.52392190167237 6.52632237528401 0.237800356643883 0.236616133151634 0.242267246954511 0.226148185588687 0.231003239186918 0.238394166123487 0.234733115505357 0.236723902534117 0.247603528711400 0.242712644469787 0.226148185588687 0.228469727502676 0.231881483142335 0.231185245030446 0.231630354956182 0.230773231255214 0.237616688699392 0.24627776612262 0.241233498107145 1 1 + 20003220 20003703 20003500 19999983 20003933 + gene protein_coding_gene FALSE TRUE AT1G53590.1 C2 domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14590.1); similar to Os02g0313700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046658.1); similar to Os01g0242600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042557.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81628.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.381097804469360 3.92800681524764 0.00240905496101623 1 4.05419640355861 13.5576811465259 0.381097804469360 0.0880023038344943
AT3G14430_at 7.856998461844 8.51251022070631 8.13914881846656 8.06767796920626 8.81468087244324 8.42162432642897 7.04644227490122 7.26696108445124 8.0123224012362 6.77771442009531 7.59685785731689 7.73388924219007 7.81091490784535 7.784591247641 7.11663535146441 7.6320132361094 7.04244227153843 7.45115052413179 7.09788594987035 0.191184293242635 0.211441105360992 0.200184594033314 0.197780509505459 0.202531163338421 0.221814279181157 0.200162852754594 0.191086056701254 0.188207135936487 0.192628582325490 0.186592688205778 0.191450985856258 0.191662690502202 0.194926399221958 0.197157319017329 0.193804295914625 0.212113505934403 0.188904484055691 0.197869830356485 3 3|0 -|/ 4824411 4824714 4824598 4824203 4824844 - gene protein_coding_gene FALSE TRUE AT3G14430.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09102.1) 0.457571279436472 3.92521492946438 0.00242056356076547 1 4.05003018722318 15.4242735469795 0.457571279436472 0.138219198962586
AT3G56410_at 5.87535404720271 6.4622423115587 6.8718699144912 6.68974550143239 6.89260059581338 6.66439905693768 5.19768453161209 5.14420507741438 6.1932013794179 6.05174143528386 6.0842242591383 6.11216473455247 5.47386648869616 5.73197401126622 5.46806569668557 5.84501710102622 5.72568526637553 6.32182734059256 6.11418604105112 0.205687519186674 0.213090708482036 0.214249808342919 0.213400264474779 0.200620002149053 0.220855863746458 0.213106953417051 0.200620002149053 0.209583029981838 0.200620002149053 0.200620002149053 0.200620002149053 0.200620002149053 0.208096132195226 0.206656237154040 0.202596627572883 0.218824446238815 0.210545899894112 0.207657460340796 3 3 - 20927322 20927808 20927471.182 20927151 20932317 - gene protein_coding_gene FALSE TRUE AT3G56410.1|AT3G56410.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61670.1); similar to cell wall-anchored protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (GB:YP_300225.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735) 0.417712884464513 3.9246501843787 0.0024228984693305 1 4.0491873122075 12.2072939949958 0.417712884464513 0.113814610850474
AT4G30630_at 5.81239487375662 5.42781954136625 6.36128610189634 6.04116287839242 7.06087991713558 6.58037390341312 6.45757937205015 5.74487042681807 5.32316622907189 5.80402798642152 6.45248789796423 5.96290214750301 6.0531654805026 6.26323059238818 5.42530539827839 6.27078669450292 5.73689965072913 5.93563712399821 5.75044768986451 0.229085071998357 0.226685203738138 0.23344932718177 0.231553827379258 0.227366014736623 0.238131004777090 0.223490493774141 0.224862948774733 0.247821729997439 0.226587268304359 0.217656516846492 0.223319752445269 0.222115848066544 0.229528106301135 0.217209180309158 0.217208891223824 0.235863590698996 0.238235039725235 0.224991873625064 4 4 + 14951556 14952071 14951784.545 14950644 14952382 + gene protein_coding_gene FALSE TRUE AT4G30630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57910.1); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE78788.1) 0.518465442412811 3.92410958453553 0.00242513574317172 1 4.04838043298576 12.0050121310299 0.518465442412811 0.172119122425899
AT1G12940_at 2.65742835112757 3.04077197262229 1.37141513883222 1.48203094978624 1.49065744314911 1.04377226223488 0.784658862172582 0.831458072904384 1.50159076255478 1.29724838472939 1.02486760208928 1.20496260415842 1.04627206438780 0.98174128498557 0.76461742465707 0.948950924499069 1.24039263362613 1.51979096846353 1.44305069394384 0.257145568205205 0.253629991666569 0.24320246787087 0.248663609672938 0.238541436994533 0.245226754931600 0.245621762741502 0.24284998287715 0.243360510048239 0.238506581835590 0.238945260971755 0.241733716174706 0.241258140187190 0.238144009434488 0.243184495977059 0.243134827258436 0.250844425823214 0.238755857622413 0.246987440147074 1 1 + 4417679 4418300 4417949.273 4416403 4418588 + gene protein_coding_gene FALSE TRUE AT1G12940.1 ATNRT2.5 (NITRATE TRANSPORTER2.5); nitrate transporter member of High affinity nitrate transporter family similar to ATNRT2:1 (Arabidopsis thaliana high affinity nitrate transporter 2.1), nitrate transporter [Arabidopsis thaliana] (TAIR:AT1G08090.1); similar to nitrate transporter [Populus tremula x Populus tremuloides] (GB:CAG26717.1); similar to membrane transporter-like [Oryza sativa (japonica cultivar-group)] (GB:BAB44020.1); similar to high affinity nitrate transporter NRT2.5 [Hordeum vulgare subsp. vulgare] (GB:ABG20828.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.402062104128534 -3.9160264727728 0.00245884491514536 1 4.03631114399181 2.84048049098751 -0.402062104128534 0.103989110625637
AT4G35620_at 0.184586819360429 0.677049397229335 0.487487636918342 0.892240866913328 0.272886432911089 0.510982052710996 0.418697455826742 0.361473071944894 -0.0793802134949496 0.0439553420578455 0.259847254676846 0.760470633597021 0.253167669366045 0.843681813948387 1.40991056125894 0.340691726618444 0.7637565372666 0.284323336028628 -0.270906070739686 0.187915297634480 0.194204294416515 0.1868821285835 0.180920950142732 0.185306817682215 0.185035735849831 0.180920950142732 0.180920950142732 0.184294613971757 0.185143273641796 0.183748177638248 0.183562117744754 0.190006837667272 0.191327063143153 0.189031937673553 0.187251926012474 0.182411070212767 0.194786322574392 0.191642172210693 4 4 + 16902993 16903745 16903407.364 16901626 16903925 + gene protein_coding_gene FALSE TRUE AT4G35620.1 CYCB2;2 (CYCLIN B2;2); cyclin-dependent protein kinase regulator similar to CYCB2,1 (CYCLIN B2,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT2G17620.1); similar to Cyclin, N-terminal domain, putative [Medicago truncatula] (GB:ABE77664.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.423519533463566 3.9154821226737 0.00246113245439922 1 4.03549802969819 0.731860905494986 0.423519533463566 0.118173494276546
AT3G53690_at 3.5237882893941 3.61051035308256 3.81507928507928 4.13710246739215 4.47256369571488 3.86922398002263 3.44570977914708 3.09071874721152 3.27066822637363 3.23220873326742 3.51856692399739 3.19684352290030 3.84085859105232 3.23203939550679 3.09095707773546 3.76457091773735 3.95411960364819 3.70132836654909 3.37940849420556 0.203415534860919 0.206399373897616 0.208683477940510 0.206918968000732 0.211175517482604 0.207929401978198 0.211568465035124 0.210819162315204 0.213898405660209 0.209063946438604 0.207023105808499 0.208188597735051 0.214289268829472 0.199914237047442 0.20623274802941 0.203038310958506 0.203200922523075 0.201740261228119 0.204167953289572 3 3 - 19910001 19910618 19910370.182 19909766 19911043 - gene protein_coding_gene FALSE TRUE AT3G53690.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G14250.1); similar to putative ubiquitin conjugating enzyme 7 interacting protein 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD28661.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.449562981726039 3.91510804345794 0.00246270574072177 1 4.03493923156163 7.16133992521706 0.449562981726039 0.134187917762324
AT1G07140_at 9.82425210434134 10.1911150138162 10.0345846336292 10.4292278679033 10.0456469245841 9.93988833388341 9.88058602255094 10.2347012359262 9.3539984751548 9.56439482860842 10.4497005489998 10.3308748080493 10.3102940890835 10.1695236792694 10.3010308765022 10.1754389630299 10.1627769711419 10.0856599877897 9.57219384036244 0.100974377114741 0.0989179540744493 0.0981798310076577 0.0998365881123736 0.0986076043034272 0.104429992675754 0.0988777420850622 0.101506172071765 0.117186616501477 0.102006140056560 0.106517784072109 0.100512943508703 0.0981361773620075 0.103359069044315 0.102374125855722 0.0999862157357726 0.103210914702214 0.103752112704730 0.100670332108432 1 1|0 -|/ 2192359 2193562 2192937.25 2191722 2193792 - gene protein_coding_gene FALSE TRUE AT1G07140.1 SIRANBP (Ran-binding protein 1a); Ran GTPase binding Encodes a putative Ran-binding protein (siRanBP). Identical to Ran-binding protein 1 homolog a (Ran-binding protein siRanBP) (RANBP1A) [Arabidopsis Thaliana] (GB:Q9LMK7;GB:O04149;GB:Q9XHS1); similar to Ran-binding protein 1b (RanBP1b) [Arabidopsis thaliana] (TAIR:AT2G30060.1); similar to unknown [Brassica rapa] (GB:ABB97039.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.415486727474675 3.9144559307443 0.00246545086719986 1 4.03396506272434 19.9450127030086 0.415486727474675 0.113071610518443
AT3G61850_at 1.21694171714820 1.46183418322885 1.17617030871417 1.38908112976356 1.36060925569860 1.67461638466667 1.23640493790738 1.10048741168147 0.929924790232611 1.14830033221356 1.85422795177375 1.76540610781234 1.59995698951853 1.28888708804666 1.86679033252943 1.66689046124654 1.06963614428496 1.33530935339841 0.798192607259548 0.220677030352262 0.215680092799062 0.215167572217459 0.226232529593257 0.219505561121198 0.209865884434523 0.215186811431111 0.216851409271173 0.215003350402894 0.217086622774472 0.210979153600522 0.223548501878713 0.217177706021559 0.215789294581179 0.215226788483769 0.209253263000807 0.212470345735287 0.212601453351648 0.217831099884234 3 3 + 22907474 22908010 22907675.182 22906243 22908533 + gene protein_coding_gene FALSE TRUE AT3G61850.1|AT3G61850.2|AT3G61850.3 DAG1 (DOF AFFECTING GERMINATION 1); DNA binding / transcription factor|DAG1 (DOF AFFECTING GERMINATION 1) Zinc finger transcription factor of the Dof family involved in the control of seed germination. Identical to Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting germination 1) (Transcription factor BBFa) (AtBBFa) (RolB domain B factor a) (DOF3.7) [Arabidopsis Thaliana] (GB:Q43385;GB:Q8GYW3;GB:Q9SAF9); similar to DAG2 (DOF AFFECTING GERMINATION 2), DNA binding [Arabidopsis thaliana] (TAIR:AT2G46590.2); similar to Dof17 [Glycine max] (GB:ABI16018.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.371642175446849 3.91434941656074 0.00246589955006544 1 4.03380593936678 2.58436514784023 0.371642175446849 0.0816072270303045
AT1G49300_at 9.80410474564504 9.77212335452151 10.2122822341211 10.2472702077634 10.2288953478989 9.99824256145306 9.87115931333821 9.69829592867758 9.59568402413542 9.6440233387724 9.99985097046806 9.6503641676734 10.0174336042086 9.9647601535836 9.8217758257124 9.93037586992048 10.0691763278093 9.92457941859774 9.64824744640018 0.112078238148757 0.104404562370290 0.105744040048801 0.105448390677497 0.106592027130531 0.113033582715664 0.102256175165044 0.102338244564277 0.115683779963532 0.108631765777095 0.103866495703327 0.108210858345170 0.105072416907644 0.106593888666835 0.109091350574091 0.103506480045829 0.111428619042465 0.110499770881854 0.105541379380491 1 1|0 +|/ 18239432 18240589 18240119.875 18238392 18241211 + gene protein_coding_gene FALSE TRUE AT1G49300.1|AT1G49300.2 ATRAB7/ATRABG3E/AtRABG3e; GTP binding encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions. similar to AtRABG3f/AtRab7B (Arabidopsis Rab GTPase homolog G3f), GTP binding [Arabidopsis thaliana] (TAIR:AT3G18820.1); similar to RAB7C [Lotus japonicus] (GB:CAA98170.1); similar to unknown [Solanum tuberosum] (GB:ABB02623.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.339111512370450 3.91428821849806 0.00246615738060217 1 4.03371451384147 19.7548506176854 0.339111512370450 0.0505513453725778
AT3G52480_at 5.07847030641873 5.41764791145974 5.36947343475603 5.77632288554496 5.85510872665871 6.13856197124455 4.06929629345818 5.20703462742652 4.33987229526842 4.14438969936489 4.76491764817356 4.18305844082939 5.29645063862705 4.91399483546354 3.8543474394621 4.68318514835224 5.29608883104108 4.19141754832084 4.28740029661724 0.227531984947508 0.219282433381843 0.230544168376259 0.223159378874343 0.219755620914196 0.227525505377222 0.224000210618460 0.221955176667062 0.233372473964095 0.225532026250381 0.226460142884308 0.221915600810101 0.218584994353425 0.217978748738301 0.21895093703534 0.220559244617364 0.224848307193666 0.223398013258847 0.221800492350298 3 3 - 19463494 19464006 19463788.455 19463232 19464140 - gene protein_coding_gene FALSE TRUE AT3G52480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11640.1) 0.616233136196907 3.91385921702806 0.00246796557198642 1 4.03307360212347 9.81656618463788 0.616233136196907 0.222653651832110
AT4G24130_at 3.89588714366473 3.71030575031969 3.51302650295655 3.51530639878252 3.17148953136690 3.36842029875454 5.16810285056794 5.79152677880858 3.64523617645353 4.62881915066309 4.27113168137304 4.15294784871775 3.77804356713416 4.57371378064797 4.36706808228044 3.57999538269306 4.26976665019964 4.56720569833117 3.09735548075697 0.219751732804664 0.213767481082457 0.227127745857786 0.223859590736338 0.221105739134515 0.221367895930985 0.220564495905581 0.221749585173178 0.213304656141773 0.218407667028009 0.214199732603841 0.213237929541576 0.213047612900154 0.217967204727803 0.213185436952129 0.212304551422553 0.212856389032657 0.219968070580890 0.222068263231607 4 4 + 12527873 12528401 12528150.273 12527763 12528603 + gene protein_coding_gene FALSE TRUE AT4G24130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46230.1); similar to Os01g0652700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043739.1); similar to Os10g0518000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065071.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB86575.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.422440565372074 -3.9136613573172 0.00246879999173889 1 4.03277799892485 8.00948533475936 -0.422440565372074 0.117611592495135
AT4G08470_at 9.67773356101037 9.8807494204771 9.9547132747183 9.89733734208955 9.93683219698554 9.38264034053855 7.83732712018019 7.48737759277508 9.16103308794835 8.059376550383 8.36977374827319 8.4244584241853 8.40014804478568 8.50398745576544 7.7463310900732 8.17433353059634 8.0456607973764 8.68045280231407 8.32634412885797 0.138741097773971 0.135395648347031 0.143025743461764 0.139237877335667 0.138795230139095 0.137532285626691 0.135336777804627 0.152314386986272 0.140833642504124 0.139457956031534 0.137051295035755 0.133542512285564 0.134875999957969 0.145486838458809 0.136698643057145 0.140548422044309 0.143745186751106 0.141339597798445 0.146927359488614 4 0|4 /|- 5384035 5385084 5384722.167 5383849 5387055 - gene protein_coding_gene FALSE TRUE AT4G08470.1 MAPKKK10 (Mitogen-activated protein kinase kinase kinase 10); kinase member of MEKK subfamily similar to MEKK1 (MYTOGEN ACTIVATED PROTEIN KINASE KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G08500.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06421.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.424821256290194 3.91319701221013 0.00247075939269126 1 4.03208424468254 17.661202768964 0.424821256290194 0.119156740991617
AT1G74740_at 3.10061787367953 3.69595954900088 3.14789099522573 3.14839351353540 3.72941412248447 3.67174098932346 2.44320559891186 2.57093894057052 3.36605536548040 2.92531858970566 3.93878885497127 3.04534034599707 3.5453265064351 3.55506653371179 2.86488127739633 3.18967960742936 3.20077945132261 3.28370073045918 2.68130148873788 0.191096470458177 0.185547035051104 0.189621264776135 0.190691710842820 0.198215700761972 0.199440609994186 0.192525433254976 0.1850893710074 0.189494528487326 0.198413914325248 0.187368525551668 0.186940604475604 0.186292743964342 0.189612719476787 0.184747689147034 0.191039477255243 0.186227591162509 0.184747689147034 0.185253154607535 1 0|1 /|- 28083867 28084606 28084225.1 28083607 28086305 - gene protein_coding_gene FALSE TRUE AT1G74740.1 CPK30 (calcium-dependent protein kinase 30); calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase member of Calcium Dependent Protein Kinase similar to ATCDPK1, calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G18890.1); similar to CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12480.1); similar to CPK13 (calcium-dependent protein kinase 13), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G51850.1); similar to putative calcium dependent protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92912.1); similar to calcium-dependent protein kinase [Funaria hygrometrica] (GB:AAK62812.1); similar to calcium-dependent calmodulin-independent protein kinase isoform 2 [Cicer arietinum] (GB:AAP72282.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.404366506712797 3.91202577024863 0.00247570887219366 1 4.03033422253775 6.3479388118948 0.404366506712797 0.105842976970756
AT1G24210_at 1.94128581619724 2.09276218405429 1.80303751481316 2.19732929619358 2.30860115241302 2.28126740971677 1.78462877106680 1.90031785100570 1.08609254359637 1.49651074858909 2.11357826892797 2.10223201064557 1.97703794884207 2.04429266580941 1.84713609708222 1.78055379934525 1.95258028399741 1.97839118317938 1.8067895356615 0.198295170770795 0.206509854263334 0.202716678995652 0.207141904040216 0.202274494371047 0.20224077914529 0.199856913494972 0.209105350029096 0.203014856566829 0.198776145386301 0.202839927117549 0.198295170770795 0.201496474981666 0.207976972500742 0.200331249565748 0.200458696848798 0.201955828105756 0.20539577446425 0.2124124373838 1 1|0 -|/ 8573765 8574485 8574116.1 8573538 8575145 - gene protein_coding_gene FALSE TRUE AT1G24210.1 paired amphipathic helix repeat-containing protein similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G27240.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.364577263658069 3.9118687467353 0.00247637321078774 1 4.03009959028869 3.75745686185473 0.364577263658069 0.0759357467096531
AT2G43790_at 7.9209509887111 8.07116194337984 8.33870961203832 8.26220218488283 8.68544122300087 8.32994767493227 8.21828566897959 7.95255428682177 7.54337654652904 7.25688497895711 7.7258508373062 7.47331678157286 8.06430433196083 7.81749832987273 7.73762324059544 7.81126106216157 7.88907313936614 7.7181592337007 7.3963804170907 0.168015679743202 0.161479822677353 0.156048998377553 0.160024849243582 0.157496636247123 0.160099052070895 0.151767251340128 0.159689878121383 0.166150529237919 0.161088305746689 0.158412842720256 0.151729308600216 0.159253437425527 0.153350811932444 0.159150368310388 0.150903552214032 0.170661947886204 0.150517896192221 0.15961834851818 2 2|0 +|/ 18146940 18147737 18147286.5 18145384 18148065 + gene protein_coding_gene FALSE TRUE AT2G43790.1 ATMPK6 (MAP KINASE 6); MAP kinase/ kinase Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress. Identical to Mitogen-activated protein kinase 6 (EC 2.7.11.24) (MAP kinase 6) (AtMPK6) (MPK6) [Arabidopsis Thaliana] (GB:Q39026); similar to ATMPK3 (MITOGEN-ACTIVATED PROTEIN KINASE 3), MAP kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT3G45640.1); similar to Mitogen-activated protein kinase homolog MMK1 (MAP kinase MSK7) (MAP kinase ERK1) (GB:Q07176); similar to double HA-tagged mitogen activated protein kinase 6 [synthetic construct] (GB:ABG54333.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE83899.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 0.37204608689097 3.91137762147194 0.00247845227023286 1 4.02936570528236 15.8116649563897 0.37204608689097 0.0821609795010081
AT3G18524_at 3.36987173232043 3.49847560671875 3.20218549412566 3.18747675327879 2.82635400093877 3.26363979876245 3.59839250812147 3.60022956662527 3.59781601220894 3.51024907681816 3.35846792540059 3.51386490048126 3.37670733250249 2.87451626073387 3.46159327534395 3.17131046832818 3.45051791933576 3.45948793112243 3.90973452730716 0.191931527854595 0.180863269807777 0.192656008423245 0.17676052463161 0.174332048435711 0.173400650857098 0.177022094615203 0.191754748088005 0.17932344922757 0.175843970647269 0.181339842968704 0.175849940420258 0.190917896806152 0.180842407301999 0.180553028987927 0.175089769273618 0.191713882027298 0.188476600003249 0.183939233347409 3 0|3 /|- 6368173 6368908 6368686.5 6368016 6372574 - gene protein_coding_gene FALSE TRUE AT3G18524.1 MSH2 (MUTS HOMOLOG 2); ATP binding / damaged DNA binding Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7. Identical to DNA mismatch repair protein MSH2 (AtMsh2) (MSH2) [Arabidopsis Thaliana] (GB:O24617;GB:Q9SQ60;GB:Q9ZR93); similar to MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) [Arabidopsis thaliana] (TAIR:AT4G25540.1); similar to DNA mismatch repair protein MSH2 (MUS1) (GB:Q9XGC9); similar to DNA mismatch repair protein MSH2 [Physcomitrella patens] (GB:AAZ42361.1); similar to DNA mismatch repair protein [Petunia x hybrida] (GB:AAT67044.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain MutS IV; (InterPro:IPR007861); contains InterPro domain MutS III; (InterPro:IPR007696); contains InterPro domain MutS II; (InterPro:IPR007860); contains InterPro domain DNA mismatch repair protein, eukaryotic MSH2; (InterPro:IPR011184); contains InterPro domain DNA mismatch repair protein MutS, N-terminal; (InterPro:IPR007695) -0.368059981062707 -3.91116409499168 0.00247935674815793 1 4.02904662401004 6.82128224449519 -0.368059981062707 0.0789208100311356
AT4G29000_at 3.05007552870818 2.99704579764404 3.11841701194515 3.26969953296915 3.10147011149502 3.03794923529015 2.74392340442973 2.81153270740761 2.7351672538276 2.79199639145912 3.15981377160029 3.2710155138584 2.99846371592833 3.29848196829178 3.47088352533184 3.03385434065364 3.36908244295457 2.8068815452113 2.73958848532855 0.212962151819493 0.214094741676652 0.222499436277926 0.220661504700843 0.218321234568443 0.213495540158777 0.215538031020501 0.213242599823350 0.218725110582099 0.215663475525995 0.213644834541754 0.209137800360406 0.219559610511392 0.212613571957938 0.215222476809039 0.211017780473560 0.213001982557173 0.215606574696316 0.214196816036711 4 4 + 14295935 14296561 14296245.909 14293519 14297072 + gene protein_coding_gene FALSE TRUE AT4G29000.1 tesmin/TSO1-like CXC domain-containing protein similar to tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G20110.1); similar to Tesmin/TSO1-like, CXC [Medicago truncatula] (GB:ABE82782.1); contains InterPro domain Tesmin/TSO1-like, CXC; (InterPro:IPR005172) 0.325857586408912 3.91048453676563 0.00248223757514243 1 4.02803109163028 5.98208598949472 0.325857586408912 0.0320522620403829
AT1G30360_at 11.0067814635983 11.0548700096568 10.8895797581603 11.0000202563596 11.3472511975788 11.1735088002695 10.7210701056629 10.6394615476825 10.6128231067870 10.5394996274868 11.1223726319480 10.7414363249888 10.9652416806354 11.0381381477596 10.8473020414047 11.2706256497476 10.5489574528996 10.8741170615014 10.3855228819065 0.0676564901280158 0.0669433997696902 0.0687558722877485 0.0682631282891193 0.0697417954062816 0.072116868865056 0.0681114703965164 0.069173615726006 0.0723132080860574 0.072269081460042 0.0703992715113038 0.0671871857664174 0.0687862143000866 0.0713730690376259 0.0673875726986791 0.0669433997696902 0.0734946383858924 0.0704687336846602 0.0691343300782326 1 1 + 10718161 10718731 10718418.727 10715647 10718979 + gene protein_coding_gene FALSE TRUE AT1G30360.1 ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4) similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); similar to early-responsive to dehydration stress protein [Picea abies] (GB:AAX92695.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.330226444954572 3.91040763138418 0.00248256381633598 1 4.02791616023620 21.6983874319981 0.330226444954572 0.0392174054060328
AT1G62920_at 2.7579888492132 2.58454210044088 2.37339433426418 2.74009902543580 2.37893507618072 2.2726692991563 2.70654310047092 3.04775260422606 2.97745887203566 3.52749526605315 2.82107263771734 2.56387046213698 3.06181648451419 2.58627386353823 2.22745414795609 2.67822585521768 2.15335041140236 2.89381961414033 2.68632159603898 0.233382564496704 0.237015054995374 0.233860083970032 0.233869437404701 0.233698798529267 0.238734296647774 0.237098367900843 0.235934653820319 0.234825228682344 0.237550676806661 0.229327416501811 0.228680508526402 0.231674205341231 0.229222363711958 0.233425400069325 0.232984336087554 0.238737937621849 0.228562473823946 0.237724183344336 1 1|0 +|/ 23308690 23309985 23309169.2 23307978 23310039 + gene protein_coding_gene FALSE TRUE AT1G62920.1 similar to proteasome maturation factor UMP1 family protein [Arabidopsis thaliana] (TAIR:AT1G67250.1); contains InterPro domain Proteasome maturation factor UMP1; (InterPro:IPR008012) -0.386727686646605 -3.90978077362948 0.00248522467846861 1 4.0269793216907 5.45123755498375 -0.386727686646605 0.0935572063336778
AT4G29040_at 10.3545013815961 10.4443712494203 10.8737770865006 10.9004002885017 10.5637888897777 10.4769926116470 10.2908301246095 10.2433458318362 9.99916733234773 10.0075312163096 10.2323346312551 10.1106578439523 10.1378194707204 10.2190279424371 10.1443970181648 10.2331853954559 10.2270513480498 10.0305080313278 9.67517045329518 0.0888625135571933 0.0892710895969127 0.0930908230620118 0.0887620577557152 0.0896188587024424 0.0963840718999778 0.0917199548463056 0.0955298104960969 0.103437001092371 0.0960351223642178 0.0887620577557152 0.0902456343016947 0.0928942634047465 0.091160013305586 0.0934032618457071 0.0887620577557152 0.101841218488283 0.0940396724539044 0.0957664095488007 4 4|0 +|/ 14313518 14314360 14313918.556 14312309 14314606 + gene protein_coding_gene FALSE TRUE AT4G29040.1 RPT2A (regulatory particle triple-A 2A); ATPase 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA, similar to 26S protease regulatory complex subunit 4, putative [Arabidopsis thaliana] (TAIR:AT2G20140.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABD32889.1); similar to 26S proteasome subunit 4-like protein [Brassica napus] (GB:CAC14432.1); similar to 26S proteasome subunit 4-like [Solanum tuberosum] (GB:ABB02638.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.321696974213741 3.90961668252348 0.00248592169533072 1 4.02673407887037 20.5489154550634 0.321696974213741 0.0235848429560307
AT3G62330_at 6.3243720931959 6.49774964634081 6.89242725307634 6.63068905570726 7.17498574570636 6.94809998532113 5.9277285229485 5.49757756629613 6.7400386133283 6.51701253513697 6.09053889676973 5.98493070380775 6.14982686354131 6.5417245772413 6.46027844471414 6.67396218753354 7.06890437032034 6.8699008590588 6.35664769036362 0.210235430724438 0.205751814175549 0.212950468169859 0.208271319907866 0.207233316173958 0.209749124562631 0.209411470221295 0.209024928443601 0.210849339668488 0.209148287304756 0.208960409302878 0.207654051861879 0.213291507727411 0.204000861590964 0.224965768982479 0.206122332521237 0.204000861590964 0.216871351522509 0.207736066638402 3 3|0 -|/ 23074339 23075054 23074606.4 23073794 23076394 - gene protein_coding_gene FALSE TRUE AT3G62330.1 zinc knuckle (CCHC-type) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22040.1); similar to Zinc finger, CCHC-type [Medicago truncatula] (GB:ABE87769.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.395901151343919 3.90948665378028 0.002486474168237 1 4.02653974146892 12.9956577214822 0.395901151343919 0.100173638534978
AT1G56700_at 9.51206964987589 9.82231277641453 10.3458106532022 10.2246616817894 10.7052754947702 10.2309799480657 10.1169747605649 9.85233388231964 8.94105218206722 9.56078558213994 9.61095043902295 9.36774535242559 9.7374571955373 9.75960587247149 9.10783561260772 9.64156169418547 9.50215643720478 9.52353476196442 9.28240670220475 0.136229276098109 0.136431715398699 0.141903940057638 0.141018739549363 0.142359729473712 0.158770882762512 0.143788064560515 0.138903166841545 0.148854555051871 0.141096989294905 0.138159603970557 0.138027263653256 0.137123214922865 0.140706208588464 0.143009348859431 0.135484716099986 0.149068747202469 0.140892892059857 0.136560885029722 1 1|0 +|/ 21260558 21261276 21260963.6 21259841 21261638 + gene protein_coding_gene FALSE TRUE AT1G56700.1|AT1G56700.2|AT1G56700.3 pyrrolidone-carboxylate peptidase family protein similar to pyrrolidone-carboxylate peptidase family protein [Arabidopsis thaliana] (TAIR:AT1G23440.1); similar to Os07g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060416.1); similar to hypothetical protein DDBDRAFT_0189325 [Dictyostelium discoideum AX4] (GB:XP_647079.1); similar to Os09g0396300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063100.1); contains InterPro domain Peptidase C15, pyroglutamyl peptidase I; (InterPro:IPR000816) 0.410350137851661 3.90634193072608 0.00249987454501303 1 4.02183903005876 19.4976877272827 0.410350137851661 0.110256184933294
AT1G03430_at 8.41741965478489 8.58250647357443 9.04596692643961 8.80748637300484 9.0527412845193 8.39538004755995 8.41732005717545 8.43124176844972 7.4911502459622 7.26813027108663 8.03863963607245 7.7972578162688 7.85502844186494 7.97863305722391 7.22050921810127 7.97137040324025 7.94684919010775 7.904472916291 7.25369022324244 0.200007822327755 0.203472944506143 0.211278780997224 0.210139286390080 0.209989582124408 0.213143016405107 0.203222464622841 0.207534819499748 0.216794111853805 0.212315400515471 0.200007822327755 0.204943689647421 0.205453310792401 0.213625479958591 0.215821233442907 0.20382899131597 0.212484820008109 0.205867290529679 0.209423324864223 1 1|0 +|/ 848165 848829 848451 847872 849499 + gene protein_coding_gene FALSE TRUE AT1G03430.1 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (APH2), AT5G39340 (APH3), AT3G16360 (APH4), AT1G03430 (APH5) and AT1G80100 (APH6). Identical to Histidine-containing phosphotransfer protein 5 (AHP5) [Arabidopsis Thaliana] (GB:Q8L9T7;GB:Q9LR80;GB:Q9MAY1); similar to AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2), histidine phosphotransfer kinase/ signal transducer [Arabidopsis thaliana] (TAIR:AT3G29350.1); similar to putative histidine-containing phosphotransfer protein 4 [Populus x canadensis] (GB:CAH56502.1); contains InterPro domain Hpt; (InterPro:IPR008207) 0.432354920425335 3.90609093111324 0.00250094733872368 1 4.02146378005274 16.2321338223519 0.432354920425335 0.124364099010042
AT4G25080_at 11.1706354011330 11.2058131154184 10.4175817109331 10.5447985090379 11.0786670755386 10.7555257359649 11.5712071911915 11.7970868983081 12.2603386870072 11.9617790736337 12.2144740647029 12.3231374403776 11.9540476751029 12.1677030457513 12.2169834029015 12.1779464284072 11.6536889058601 11.9945157397778 11.9869652855136 0.0735842973081375 0.0719644599668475 0.0764017554879355 0.0720754082554889 0.0713767084460868 0.0770596581078793 0.07172335890558 0.0746677483964504 0.0779509472886684 0.0721407818377117 0.0741344027415577 0.071243892443019 0.0713689417423064 0.0739984892804114 0.0764004121212546 0.071243892443019 0.0784766881902512 0.0733431434419507 0.0723136469646173 4 4 + 12877438 12878111 12877759.818 12876958 12878657 + gene protein_coding_gene FALSE TRUE AT4G25080.1|AT4G25080.2|AT4G25080.3 CHLM (MAGNESIUM-PROTOPORPHYRIN IX METHYLTRANSFERASE); magnesium protoporphyrin IX methyltransferase|CHLM (MAGNESIUM-PROTOPORPHYRIN IX METHYLTRANSFERASE) Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including componenets of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope. similar to S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase [Nicotiana tabacum] (GB:AAF70243.1); contains InterPro domain Magnesium protoporphyrin O-methyltransferase; (InterPro:IPR010251); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Magnesium-protoporphyrin IX methyltransferase, C-terminal; (InterPro:IPR010940) -0.359462327251058 -3.90600618739234 0.00250130964856892 1 4.02133708438864 23.1464176729799 -0.359462327251058 0.0719507002877106
AT4G02230_at 10.6576696246790 10.7685021486959 10.3862904983505 10.3717900548628 10.7765067032679 10.6092129470486 10.5820045068505 10.6332594917884 10.1821274114727 10.3502896774776 9.77667992195845 9.69205706437254 9.9911260076995 9.70130138982896 10.0063464901892 9.5086818869354 9.91166927589319 9.71372854723213 10.4234779756285 0.0915791553893394 0.0941798395613185 0.0923164333240005 0.091914049004693 0.0934961598225896 0.0927132923972332 0.0901029617616096 0.0893761568442547 0.095025031828631 0.0893761568442547 0.0968897895156685 0.0917661796142025 0.0893761568442547 0.0950056951956686 0.094989780440956 0.0961619703338743 0.100182449972355 0.0922233590100718 0.0893761568442547 4 4|0 -|/ 979527 980586 979972.556 979170 980670 - gene protein_coding_gene FALSE TRUE AT4G02230.1 60S ribosomal protein L19 (RPL19C) Identical to 60S ribosomal protein L19-3 (RPL19C) [Arabidopsis Thaliana] (GB:P49693;GB:O81422;GB:Q9M114); similar to EMB2386 (EMBRYO DEFECTIVE 2386), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G02780.1); similar to Ribosomal protein L19e [Medicago truncatula] (GB:ABE84969.1); contains InterPro domain Ribosomal protein L19e; (InterPro:IPR000196) -0.327670878650127 -3.90508530550301 0.00250525026625849 1 4.01996026231731 20.6513197525463 -0.327670878650127 0.0359305766632121
AT1G25500_at 5.50854712152944 5.52047988994238 5.65193337964728 5.78259690269985 4.99176479688114 5.05564293894566 4.08182947799515 4.37355601160386 2.93396365498672 3.37217022282542 3.47511975326377 3.4001983753254 3.56390836505189 3.62255648282473 3.33727681350254 2.98460417831921 3.60040026257368 3.37009441057976 3.38915505818978 0.237624851591173 0.225079800376801 0.229326781066957 0.227610535708227 0.227637263296338 0.232628957235253 0.224502662486855 0.225311553522920 0.224502662486855 0.22746009147964 0.228460502573492 0.224502662486855 0.225072721383090 0.23189747501116 0.225405471581821 0.228155849754067 0.254055245019097 0.227195209934903 0.228327299764204 1 1 - 8955428 8956257 8955830.545 8955236 8957936 - gene protein_coding_gene FALSE TRUE AT1G25500.1|AT1G25500.2 choline transporter-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13760.1); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_821483.1); similar to Os02g0580100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047233.1); contains InterPro domain Protein of unknown function DUF580; (InterPro:IPR007603) 0.343444115394292 3.90442125849821 0.00250809584264965 1 4.01896736648154 8.44631021932931 0.343444115394292 0.0564487587660175
AT4G38500_at 6.13361430776294 6.58611181807465 6.31750392317807 6.385562555761 6.88188537654048 6.31621910342822 6.09525065000907 6.14385037711603 4.98636752190242 5.61925089616195 6.19537676555114 6.17965264652228 5.71625771619055 6.01988850155148 5.90687715540752 6.01707263010327 5.36467153921503 5.82327646881462 5.19961856272615 0.220908193054410 0.21660672890426 0.21660672890426 0.234839593952261 0.225817404564434 0.239560216565598 0.218579863420263 0.224280123052952 0.242820823691202 0.227574020531778 0.222769425371047 0.220314450215978 0.21660672890426 0.233480165146893 0.225167419876397 0.229568187269144 0.235934091341911 0.23026239793525 0.229175286565981 4 4 + 18009839 18010623 18010260.545 18007750 18010897 + gene protein_coding_gene FALSE TRUE AT4G38500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) 0.435028901237795 3.9035383972077 0.00251188428220863 1 4.01764720346607 11.9431480164086 0.435028901237795 0.126190701458354
AT1G05230_at 4.67758835427028 5.03709307341092 4.29584215101004 4.39981282680468 4.93124925734182 4.54224473276433 4.94094047822374 4.9942857071128 5.37291831944159 5.1145450832269 5.17664897278659 5.22713358455503 5.15247582898453 4.9092644815712 4.81993955710116 4.71914877729996 4.65861719295301 4.51217537199437 5.41157572220235 0.230267603858352 0.203764598485250 0.206871535496398 0.205296986746876 0.212949323564645 0.201788792509738 0.202247408976235 0.209087430941073 0.221625248200238 0.204923861055778 0.210677415985146 0.20414943137077 0.202701151867460 0.205277263576661 0.211337834480152 0.205202181393470 0.230440259932278 0.205612951033587 0.200623959065827 1 1|0 -|/ 1513466 1514050 1513627.9 1512900 1518804 - gene protein_coding_gene FALSE TRUE AT1G05230.1|AT1G05230.2 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G32370.1); similar to homeobox protein (GB:AAB37230.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); similar to homeobox 1 [Picea abies] (GB:AAG43405.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.386471949329382 -3.90291277876373 0.00251457246657823 1 4.01671163821295 9.82568466221533 -0.386471949329382 0.0938690001426898
AT2G28430_at 8.13101051503625 8.62429553702881 8.35106468263366 8.32379211990185 8.84016490024333 8.0381437375462 8.22432636700701 8.00186282920656 7.16782122638837 8.01733836392472 8.86535574302567 9.05267867050129 8.62133814544717 8.5783067234039 8.93916201115804 8.78862949384779 8.01918764849314 7.83678000336592 7.96428302203543 0.173367327808947 0.171318745433410 0.170140421272871 0.169342593417129 0.171542322437456 0.185856456591824 0.168249713632245 0.172816999616353 0.175280180737317 0.177281269688199 0.168225925219545 0.167521972197180 0.169104726560541 0.180312043618605 0.171110795203634 0.168982846941429 0.173889918514586 0.180589244695033 0.169283599586368 2 0|2 /|- 12166827 12167338 12167118.4 12166639 12167528 - gene protein_coding_gene FALSE TRUE AT2G28430.1 similar to unknown [Hyacinthus orientalis] (GB:AAT08697.1) 0.507058241067063 3.90282019975528 0.00251497051778162 1 4.01657318881141 16.4689129239196 0.507058241067063 0.167497058289206
AT1G02910_at 8.37092317848842 8.48458774271622 7.9477733729403 8.17398733740153 8.57866589215748 7.55544488888128 9.197459066517 8.9226136428521 8.70711485497224 8.89265222857525 8.54683948325572 8.75377113107166 8.19392046502581 8.50813024016228 8.3934012359676 8.56336163488195 7.79601759330336 7.92791824277672 8.6471564670064 0.165087559270198 0.157908374156548 0.180288332679147 0.165084910541902 0.162098495003550 0.178307355110197 0.161180222400741 0.159740176704487 0.173897662719177 0.157908374156548 0.166065252437985 0.158919027074331 0.163306204974458 0.175595153207155 0.161962112214007 0.158234958094464 0.181546983235299 0.162518502290404 0.157908374156548 1 1|0 -|/ 655765 656607 656223.4 655577 658148 - gene protein_coding_gene FALSE TRUE AT1G02910.1 LPA1 (LOW PSII ACCUMULATION1); binding Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28740.1); similar to Os01g0358300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043014.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55849.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.546741274171973 -3.9023422673885 0.00251702646925305 1 4.01585843557082 16.9461291503228 -0.546741274171973 0.188511553458482
AT2G46530_at 4.67030291027221 4.22345806101804 3.37965914901188 2.60243772131541 4.01228472735876 3.42239526310914 4.76038571763186 4.23128295580124 3.72307769754979 3.55453983257279 4.05101817376675 4.12665128042477 4.15338999331358 4.08939603588469 3.9698787473855 3.56808789727883 3.75340037768488 3.51527184181044 4.57944267504538 0.223446977073677 0.21472580894845 0.218652975714200 0.218059774696546 0.219110707849281 0.21616968546964 0.220566431391416 0.220271874333681 0.224765022910952 0.22168506241957 0.21472580894845 0.219955820939666 0.217621828447169 0.218388934312388 0.223112648391332 0.214896654625951 0.226706958171578 0.226605727108213 0.223051325519523 2 2 + 19114310 19115027 19114543.636 19111737 19115403 + gene protein_coding_gene FALSE TRUE AT2G46530.1|AT2G46530.2|AT2G46530.3 ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor Identical to Auxin response factor 11 (ARF11) [Arabidopsis Thaliana] (GB:Q9ZPY6); similar to ARF9 (AUXIN RESPONSE FACTOR 9) [Arabidopsis thaliana] (TAIR:AT4G23980.2); similar to ARF18 (AUXIN RESPONSE FACTOR 18), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61830.1); similar to OSJNBa0064D20.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE04227.2); similar to Os04g0442000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052879.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311)|similar to ARF18 (AUXIN RESPONSE FACTOR 18), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61830.1); similar to OSJNBa0064D20.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE04227.2); similar to Os04g0442000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052879.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311)|Identical to Auxin response factor 11 (ARF11) [Arabidopsis Thaliana] (GB:Q9ZPY6); similar to ARF9 (AUXIN RESPONSE FACTOR 9) [Arabidopsis thaliana] (TAIR:AT4G23980.2); similar to ARF18 (AUXIN RESPONSE FACTOR 18), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61830.1); similar to Os02g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047137.1); similar to Os04g0442000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052879.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.583064902130502 -3.90209078692251 0.00251810897927609 1 4.01548233137667 7.84064591077298 -0.583064902130502 0.207063559367118
AT3G15110_at 7.05057747724211 6.9913056182724 6.62207113879663 6.38147278558084 7.42830052416523 7.16726690258911 6.67355246736618 6.81823596665792 6.76762967356673 6.6738032929147 7.37285872729156 7.48037716490155 7.15957421084749 7.43377214953016 7.45436723129369 7.56269651976534 7.37280940650707 7.14624075537619 6.60335002180434 0.155492845176597 0.155935976157464 0.166712153790781 0.168712284092975 0.158940642435217 0.168874727671689 0.166636366976465 0.162628462456162 0.162707527208358 0.161781377520673 0.155321111845874 0.158095850457183 0.155321111845874 0.168050188142847 0.166931975943607 0.157294545042563 0.163445270518433 0.170711625622354 0.159043247610437 3 3 - 5084462 5085598 5085084.455 5084285 5085850 - gene protein_coding_gene FALSE TRUE AT3G15110.1 similar to Os02g0307800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046643.1) 0.35380132332942 3.90169323949798 0.00251982122815199 1 4.01488775791226 13.9188135351427 0.35380132332942 0.067129282045638
AT2G30250_at 7.84487843003016 8.0263192821227 7.39516966632128 7.9083441345611 8.24636790387385 7.432874157491 4.888963468881 4.70600991700107 6.53754802225693 5.57281932587936 5.94797412602092 5.47736246977693 5.25920463107372 6.3751311729882 4.69321314352459 5.2850466498499 5.15987606078302 5.19911752543347 5.20742907040224 0.261889082160989 0.259595289876806 0.279809431832541 0.260091421861176 0.264713246158749 0.26505606001868 0.261970481252586 0.265122304168662 0.269839180361924 0.25605427758645 0.267262491430405 0.25605427758645 0.261445887292976 0.264517886692207 0.270001971671128 0.25605427758645 0.268854682538267 0.26422007853924 0.257690501393860 2 2 - 12910648 12911341 12911095 12910313 12912275 - gene protein_coding_gene FALSE TRUE AT2G30250.1 WRKY25 (WRKY DNA-binding protein 25); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25) (WRKY25) [Arabidopsis Thaliana] (GB:O22921;GB:Q94AT4); similar to WRKY26 (WRKY DNA-binding protein 26), transcription factor [Arabidopsis thaliana] (TAIR:AT5G07100.1); similar to SPF1 protein [Ipomoea batatas] (GB:BAA06278.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.515581553652451 3.89946040901514 0.00252946059058292 1 4.01154793376895 12.6547231343407 0.515581553652451 0.172318732468927
AT1G03730_at 6.51289570867808 6.86873902644258 6.59684948573524 6.71454036486516 6.6710113852114 6.815419973852 5.49905557478572 6.20924551948425 5.6700353317989 5.60011692407937 5.83879455417923 6.46962876062588 6.00040986796255 6.210163200002 5.7966096893842 5.88828153629285 6.20637345038212 5.99649866165101 5.40551715612426 0.232535964428821 0.231221125149953 0.231955487147651 0.235667067941412 0.240711849680804 0.230373673616109 0.226514151357052 0.222510193189758 0.229730046169103 0.227293213097013 0.228930622935672 0.219853562566309 0.219075439980873 0.219075439980873 0.234308594478176 0.219810282619990 0.225280343662616 0.224884428312443 0.222961165544636 1 1 - 931067 931474 931292.091 930828 931895 - gene protein_coding_gene FALSE TRUE AT1G03730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03600.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA97787.1) 0.459629919730381 3.89925117600484 0.00253036583162104 1 4.01123493284753 12.2906703477455 0.459629919730381 0.141195978702725
AT3G05560_at 10.5149607480522 10.5740709235996 10.1252684569337 10.206817501947 10.0641489290191 9.8633018806744 10.6937348468946 10.9213601263098 10.1136664012423 10.2755118639947 10.1327091912092 10.4129602648563 10.0408581338369 10.1272148389025 10.7400044104222 9.72219814530068 9.73663756361109 9.88979432258506 10.1300656201317 0.0978128801895818 0.0954653077301664 0.0939260546317227 0.094767743163745 0.101223493732347 0.106337597123102 0.102092084559802 0.100006861392674 0.116802946575962 0.093335978838501 0.096896755197671 0.0999911146918387 0.0932757012442768 0.095086229041556 0.0924208640770968 0.094735621484971 0.112034536482954 0.100654913269595 0.0924208640770968 3 3 + 1614648 1615114 1614784.455 1614184 1615512 + gene protein_coding_gene FALSE TRUE AT3G05560.1|AT3G05560.2|AT3G05560.3 60S ribosomal protein L22-2 (RPL22B)|structural constituent of ribosome Identical to 60S ribosomal protein L22-2 (RPL22B) [Arabidopsis Thaliana] (GB:Q9M9W1); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicago truncatula] (GB:ABE92854.1); contains InterPro domain Ribosomal L22e protein; (InterPro:IPR002671) -0.341965827676459 -3.89901329159283 0.00253139544090187 1 4.0108790638944 20.5071471286605 -0.341965827676459 0.0553496518101688
AT2G43070_at 8.21517483099019 8.35152615588724 8.00017506831497 7.97061178408557 8.46086463052468 7.7243317334011 8.15692720600063 8.24673202687794 5.50426105817623 6.22264230145769 7.13238312595205 7.44941290408257 7.49579214699652 7.34223562843282 7.08414673220792 7.00882881971225 6.87493530143509 6.78389554397774 6.45065881926895 0.291094547826603 0.286153493500863 0.299199277012968 0.302146725878774 0.292172741137398 0.293557152984714 0.298683817510762 0.284754205458294 0.345916959806791 0.295660466214857 0.288054917347633 0.284754205458294 0.302749640896064 0.288032444334082 0.284754205458294 0.284754205458294 0.349905738373187 0.320969766796468 0.293556388349342 2 2|0 -|/ 17918800 17919677 17919262.286 17917965 17921947 - gene protein_coding_gene FALSE TRUE AT2G43070.1 protease-associated (PA) domain-containing protein similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71293.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.441836065762294 3.89901268607047 0.00253139806227365 1 4.01087815803886 14.7436135136689 0.441836065762294 0.130654699461593
AT4G26940_at 7.80862995606692 7.93659825235512 8.19846921500175 8.40677664110553 7.91421267920062 7.52888248201211 8.69995839868668 8.4937329172773 8.02207896556673 7.19379972364106 8.81510023700426 8.90211059175244 8.05779036502261 8.47406029256332 8.83726729969761 8.47512801591946 7.84418149676941 8.68360376876486 7.39071730655428 0.184093568864822 0.18248569252221 0.198604045970568 0.187888477711135 0.184409302632264 0.205172523950639 0.182771471230276 0.187362301566080 0.194773769659268 0.196131058597999 0.180659497595945 0.178408659261894 0.184090206227376 0.187688362284801 0.191296592262706 0.181485063557039 0.199247163372718 0.184567867853537 0.192240563779715 4 4 - 13529927 13530843 13530356.909 13529431 13532705 - gene protein_coding_gene FALSE TRUE AT4G26940.1|AT4G26940.2 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659)|similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.376489316541444 3.89837408799867 0.00253416419221728 1 4.00992279419885 16.1467511962253 0.376489316541444 0.0866615491488386
AT1G48870_at 2.33753502116964 2.47334108081648 2.20529123986041 2.22185214446535 1.67933238504096 2.12099191171163 1.97482781837741 2.62845464145947 2.49138668523269 2.93469711987781 2.26707470566837 2.08160019060754 2.01860717133294 1.88280888376611 2.2574175586753 2.34087800727123 2.38425330773045 2.47463582890132 3.05389658484821 0.231317872870359 0.226573420770653 0.229688960229223 0.229384020611574 0.228964939175571 0.235882037283653 0.227337942836231 0.227914917693556 0.244982525817204 0.227541818095527 0.229980375068382 0.226240781773225 0.234644526562989 0.235264428070405 0.238590119428016 0.226240781773225 0.232326067850060 0.231071751824873 0.232297621470580 1 1 - 18076038 18076630 18076279.182 18075993 18078125 - gene protein_coding_gene FALSE TRUE AT1G48870.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G64610.2); similar to WD40-like [Medicago truncatula] (GB:ABE81170.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.454961696714123 -3.89796413277307 0.00253594159469111 1 4.00930945881173 4.72523807372787 -0.454961696714123 0.138552789405814
ATMG01400_at 2.72955496900191 3.16203029076680 2.55538236288926 2.64298058867012 2.54940651739101 2.62746509041390 2.60181028712251 2.96019060370173 2.99422904240314 3.21872374734713 2.34767187055769 2.78060462051634 2.63145328901678 2.85800700012277 2.53237068369490 2.68549132845626 2.70076085055051 2.74932314078143 3.32129399318373 0.179923673042539 0.178866946752264 0.174954967015469 0.172932899562375 0.173889729116770 0.172929338461393 0.181600395923718 0.184614250393503 0.171177481191993 0.174421376949385 0.177705857362404 0.177893272595211 0.176238930191113 0.174848082338464 0.176221846163577 0.172790971500013 0.175227116059219 0.181129162328154 0.18773090690361 M M + 363741 363997 363879.273 363725 364042 + gene protein_coding_gene FALSE TRUE ATMG01400.1 Identical to Hypothetical mitochondrial protein AtMg01400 (ORF105b) [Arabidopsis Thaliana] (GB:P92566) -0.39347990541154 -3.89780588968895 0.00253662801989779 1 4.00907270477882 5.6479988932147 -0.39347990541154 0.0992974851002496
AT1G65900_at 4.20844995904583 3.77416837331050 2.21650244276518 1.90313574392636 1.88998451454327 1.95088434056931 3.86705677259553 3.78185787964801 1.78923596182885 3.130832828592 4.41238090210069 4.9181955628584 3.31086669076665 3.41703789536374 4.94162577371785 2.84125990269278 2.73577074243768 3.18125117602393 2.80631396916219 0.215443430860060 0.212746054618807 0.217674489473359 0.210509844651568 0.215207258636705 0.214736923000542 0.208576705820168 0.209817718803516 0.23087353791183 0.215106240365083 0.218140390112133 0.212492570327136 0.208503752341721 0.214625482162565 0.228964995825462 0.208503752341721 0.211859885686539 0.214380776893051 0.212821487198564 1 1|0 -|/ 24519689 24520821 24520239 24519500 24522150 - gene protein_coding_gene FALSE TRUE AT1G65900.1 similar to Putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] (GB:AAO15295.1); contains domain "Helical backbone" metal receptor (SSF53807) -0.386709412407367 -3.89756619742857 0.00253766812199524 1 4.00871408486983 6.09663475360361 -0.386709412407367 0.0944324945442092
AT3G20790_at 7.76817372868205 7.8858824667844 7.05437599356187 7.01042703841985 7.71972118653917 7.27411041096143 8.27667653182103 8.18676372851883 8.5475248535206 8.52072861872116 8.94855529701278 8.71065281320902 8.00581356153279 8.80853674411518 8.87122286294686 8.34184826169547 7.96142964807518 8.4694894652501 8.4020520053275 0.169358093438324 0.160089268430084 0.176874585752067 0.159141911407698 0.161562353872190 0.168063265377814 0.170617421674035 0.17126054899384 0.176131370690386 0.157962550553636 0.156976092804978 0.149814187779648 0.156562084327926 0.161704268477671 0.159237197250507 0.153488956272535 0.17023690582589 0.158228126258714 0.153672737122709 3 3|0 +|/ 7269706 7271070 7270632.625 7268758 7271293 + gene protein_coding_gene FALSE TRUE AT3G20790.1 oxidoreductase family protein similar to Oxidoreductase, C-terminal [Medicago truncatula] (GB:ABE85999.1); similar to Os09g0280300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062764.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) -0.370061850353871 -3.89755519092923 0.00253771589338317 1 4.00869761711201 16.1494140894541 -0.370061850353871 0.0816187390993485
AT2G01070_at 4.00598711899847 4.1557629136813 3.69944532717788 3.88607756974633 4.20875901679660 4.04525504096486 4.06954822565544 4.18250151302042 4.37733713547585 4.14886391652392 5.2302892422417 5.78191061416442 5.0471202082449 5.31395873236358 5.11701115184685 5.05471739837653 4.45224777036162 4.93916131088034 4.35178519726969 0.224208305228367 0.217732434983853 0.216156923826908 0.219144265453161 0.212069728964067 0.21568876142865 0.224480338316132 0.218167171540447 0.229140425222955 0.233638893687726 0.215277121276184 0.212135040022127 0.21832836624411 0.221794475407532 0.218130532565694 0.219906071572513 0.216621651384990 0.211668298421031 0.224331779290187 2 2 + 76606 77512 76960.455 75520 77865 + gene protein_coding_gene FALSE TRUE AT2G01070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72480.1); similar to Os03g0334800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050031.1); similar to Os11g0546100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068063.1); similar to Lung seven transmembrane receptor family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95807.1); contains InterPro domain Lung seven transmembrane receptor; (InterPro:IPR009637) 0.34041213315134 3.89677945846476 0.00254108514994490 1 4.00753693706089 8.73652415908006 0.34041213315134 0.0538298424822989
AT3G27160_at 10.8495696517178 10.7783333984264 9.88443460922768 9.91985533927977 10.3605392866143 10.5280990821472 10.8645691663334 10.914244456961 11.4744823880600 11.3860484704436 11.5416949564821 11.7721944392161 11.1444175867884 11.3378033782302 12.1479724714413 11.3888531632519 10.8720331410181 11.2235353859083 11.3417779817001 0.123703641345111 0.122351727184117 0.149050897158154 0.1610961695404 0.127056637626996 0.138251020960599 0.126211827341216 0.122351727184117 0.124522842073962 0.122351727184117 0.122351727184117 0.127125385967935 0.127096670710850 0.126778409761770 0.136983043742361 0.128171642420436 0.130168226641944 0.131828748281495 0.122351727184117 3 3 + 10018803 10020067 10019398.429 10018713 10020327 + gene protein_coding_gene FALSE TRUE AT3G27160.1 GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome GHS1 encodes plastid ribosomal protein S21 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G63300.1); similar to ribosome-like protein [Cucumis sativus] (GB:AAL35983.1); contains InterPro domain Ribosomal protein S21; (InterPro:IPR001911) -0.325326818575808 -3.89618932852634 0.00254365138570731 1 4.00665390851501 21.9271219631851 -0.325326818575808 0.0332306194301642
AT2G41730_at 3.56901443305994 4.1898634239194 5.05102384506562 5.47411559994131 4.40915387279314 4.50366085603158 3.69480419970155 3.97178298673002 4.1867650478179 3.67189157466951 3.7576584610052 3.80414307012856 3.65088935591225 4.01976480575822 3.85946978732823 3.35518123065534 3.7864621087778 3.85172195834663 3.69495012021019 0.251641839925959 0.254956346780828 0.257175036510959 0.2581541211456 0.268319324641127 0.247701417862245 0.259682270247801 0.251153606662254 0.254843179625731 0.247701417862245 0.247701417862245 0.254475377314376 0.25507809641208 0.247701417862245 0.247804562894051 0.252638514048430 0.258243778844474 0.252513823307364 0.255604532641292 2 2 + 17416578 17416862 17416733.667 17416541 17417015 + gene protein_coding_gene FALSE TRUE AT2G41730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24640.1) 0.456290691139170 3.89505443094521 0.00254859416233020 1 4.00495559733560 8.16385919955777 0.456290691139170 0.139532819743460
AT1G61420_at 4.21850328756039 3.75442329961678 4.92033861271918 4.45926545037351 2.91362899322142 3.48158836377778 1.95525017202169 2.16826315168524 2.30091648999025 1.95843097188909 1.95012503781428 2.50806407336858 2.01657383923148 2.28718523872865 2.16387097113616 1.86461782176187 2.43633954268485 2.44488661763074 2.23326579534505 0.259938583125239 0.258744724974592 0.273364072254768 0.265070248485529 0.254448518132794 0.253711588169699 0.249694127712460 0.255150663629696 0.253821055233521 0.255502451090846 0.25070153999085 0.249694127712460 0.253260241905167 0.249694127712460 0.251678883492497 0.256168946660207 0.25361017683463 0.250527236966866 0.252896348424077 1 1 - 22664269 22664986 22664561.182 22664125 22667303 - gene protein_coding_gene FALSE TRUE AT1G61420.1 S-locus lectin protein kinase family protein similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61500.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.482174425510863 3.89453913325022 0.00255084171028429 1 4.0041844260864 5.67048882230668 0.482174425510863 0.154388725200087
AT1G22050_at 6.40556354358773 7.42536700071214 7.63121842880741 7.5670789039184 8.26812617849738 7.99112396880268 7.57014905625991 7.51173394569363 6.7335557185934 7.05352834408995 7.410021307635 7.38462424619076 7.77303656518265 7.38357571090911 7.17619222128056 7.88423464867108 7.76672544084411 7.31882657811189 7.44300232330985 0.195705017358832 0.185882600301673 0.193103988984159 0.184709451845701 0.188193456409776 0.191356554082881 0.185359393053439 0.200168415849670 0.198401532160473 0.194090817819261 0.180661305803572 0.185336301126416 0.189085025447226 0.195402541077110 0.189249297730996 0.183555090287925 0.204895359601041 0.185530549655749 0.187539125203480 1 1 + 7771931 7772808 7772464.545 7771659 7773143 + gene protein_coding_gene FALSE TRUE AT1G22050.1 ubiquitin family protein Identical to Membrane-anchored ubiquitin-fold protein 6 precursor (Membrane- anchored ub-fold protein 6) (AtMUB6) (MUB6) [Arabidopsis Thaliana] (GB:Q8GWJ6;GB:Q9LM54); similar to MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G77870.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); similar to Os02g0750600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048133.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.535821305649264 3.89308367398327 0.0025572010367387 1 4.00200605977229 14.8407201542104 0.535821305649264 0.183491445574632
AT3G50830_at 9.9900723661725 10.2064075461463 10.5337100692881 10.6092921632023 11.0585277684219 10.7190635274546 10.5081534288044 10.5297475929962 10.6477407306366 10.1500062951896 10.9542083255806 10.5177818762258 10.8226069381155 10.7709369082380 10.3155502500353 10.5239313217136 10.1953140319741 10.5969689247148 10.0858251409078 0.109589793673978 0.101561269629756 0.104933634157070 0.105449548309320 0.102533752278696 0.107971464171436 0.108029766809599 0.103126907131578 0.109884795362158 0.103309283940505 0.104525380247495 0.101987400042029 0.101563691435602 0.10390049514457 0.109864324623759 0.101561269629756 0.1176969744544 0.105157841343454 0.106497761704789 3 3|0 -|/ 18905125 18906281 18905491.556 18904826 18906478 - gene protein_coding_gene FALSE TRUE AT3G50830.1 COR413-PM2 (cold regulated 413 plasma membrane 2) cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable. similar to stress-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G37220.1); similar to putative stress-responsive protein [Tamarix androssowii] (GB:AAT01418.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.357095707529308 3.89206484740535 0.00256166238092143 1 4.00048102733135 20.9602149966372 0.357095707529308 0.0709768554767092
AT2G27970_at 4.67450343327944 5.15019513469978 5.04944889521807 5.19501773019939 5.02003428457527 4.57161533698197 4.52154050817663 4.88961709559997 4.16233902719425 4.9815767246724 4.83165797905488 6.10892088459392 5.04963335782039 5.48969072689977 6.26730403024142 5.42657612979614 4.79040888936545 4.9303397656735 4.73013869809583 0.190172975371956 0.194849061785718 0.190947059169227 0.192860870874960 0.196702188462882 0.200918788915952 0.194089303505815 0.197372787941122 0.204630794162948 0.205634116692520 0.190172975371956 0.195632429290412 0.192936158505013 0.205167768826527 0.192108019357401 0.19696822577608 0.196509464058818 0.207460639228900 0.190600264969418 2 2|0 -|/ 11919540 11920162 11919730.8 11919289 11920374 - gene protein_coding_gene FALSE TRUE AT2G27970.1 CKS2 (CDK-SUBUNIT 2); cyclin-dependent protein kinase similar to CKS1 (CDK-SUBUNIT 1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G27960.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36296.1); similar to putative CDK regulatory subunit [Ipomoea trifida] (GB:AAS79576.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) 0.443598336290621 3.89124580759163 0.00256525473759356 1 3.99925494558754 9.87724719588373 0.443598336290621 0.132251902985391
AT1G71140_at 5.79793195045021 5.64682928092945 6.79524095229307 6.14195385930428 6.51112837709759 6.4510754678682 6.93769747992203 6.95955415415062 6.16159799595231 7.16440035885767 5.52450791334683 5.3056009273477 6.02624846580872 5.52357290323509 5.19149566173021 6.08479316945126 5.70570985594114 5.12454441938881 6.2836698083492 0.259509899294682 0.250227564361510 0.251564712988876 0.250409938224017 0.254292610170503 0.264055926951414 0.255687131429742 0.25231547258559 0.275565919734411 0.250227564361510 0.253380877341812 0.252407741815323 0.250227564361510 0.266887352948187 0.250227564361510 0.250227564361510 0.266645934098246 0.264668538714713 0.250227564361510 1 0|1 /|+ 26829554 26830183 26829899.444 26828339 26830410 + gene protein_coding_gene FALSE TRUE AT1G71140.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); similar to Os01g0684900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043893.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.418200221038734 -3.88944623105801 0.00257316617031643 1 3.9965607109928 12.4538590497107 -0.418200221038734 0.116564887712909
AT3G50350_at 6.39715073877878 6.30651527276087 5.59413380931871 5.74205273970829 6.43287236321653 6.64287548867797 5.62919950628239 5.91549568737757 5.69650469205408 5.19571757539908 6.08827742951312 6.45868962871674 6.12820067418158 6.23737652111383 6.4045952400205 6.14454468010329 5.98256240335218 6.16990920130747 5.71225425478948 0.199107049088821 0.195667355019259 0.199155215330589 0.194631094804051 0.195628283168750 0.200095683784174 0.19457636450236 0.191377864178358 0.198359609345998 0.196690726044741 0.200198097943676 0.192036373121808 0.191157967255708 0.202853151704522 0.191975959787196 0.193625600948885 0.204569135567060 0.193008327825252 0.201637159856091 3 3 + 18684066 18684625 18684290.091 18683888 18684688 + gene protein_coding_gene FALSE TRUE AT3G50350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33985.1); similar to Os04g0282200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052367.1); similar to Os02g0766600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048224.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19985.1); contains InterPro domain Protein of unknown function DUF1685; (InterPro:IPR012881) 0.353918631902424 3.88820696701824 0.00257862904181671 1 3.99470509679498 11.9508344406165 0.353918631902424 0.0683865117772133
AT1G49890_at 5.56972886951046 6.49950124013738 4.68538096938878 5.12125059939309 5.32888938259781 5.58801870631452 6.16388895954044 6.57782063347367 5.97948385353587 5.51320933701782 5.53564244754764 5.8358907865382 5.89114494310479 5.91952530769609 5.93675432722946 6.09013214891363 5.24155008739348 5.62610793065081 6.08491414399579 0.213237604591999 0.207627746778973 0.216145943690265 0.206862616725131 0.209960289672148 0.209093792617864 0.212926982402156 0.206106437375326 0.206417859293856 0.207687166725326 0.205670845327416 0.204644254885486 0.204519385494143 0.210685716902810 0.217133783648463 0.203413506587768 0.209104166097531 0.209443706625825 0.208216623934175 1 1 + 18475334 18477105 18476186.091 18473743 18477491 + gene protein_coding_gene FALSE TRUE AT1G49890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19570.2); similar to Protein of unknown function DUF566 [Medicago truncatula] (GB:ABE79541.1); contains InterPro domain Protein of unknown function DUF566; (InterPro:IPR007573) -0.560729479353747 -3.88793124167487 0.00257984611940693 1 3.99429221114178 11.5012078911616 -0.560729479353747 0.196776655167877
AT4G38120_at 1.45266362415040 1.63857473326975 2.12568362871908 1.84119105335099 1.80782842363399 1.46191349284264 1.77975316748647 1.48558360559862 1.38723261936379 1.11198503644762 1.44800934379982 1.72469090130339 1.58253713734633 1.35581598628888 1.98312066908053 1.50530597670695 1.5849518003957 1.62279960301614 0.618518469154432 0.199759633757820 0.201575899235341 0.204295811374091 0.198948117490628 0.203833483035439 0.209879463511024 0.204453796020456 0.197268152558197 0.197650041473459 0.208414587151802 0.199941301436673 0.202814207384757 0.209462314758367 0.198912421768035 0.198801962522206 0.1994672103501 0.201462889543893 0.197878549808739 0.207438109588489 4 4|0 -|/ 17894168 17895066 17894534.9 17894166 17896101 - gene protein_coding_gene FALSE TRUE AT4G38120.1 contains InterPro domain Hpt; (InterPro:IPR008207) 0.390834459631984 3.88747818399312 0.00258184725390251 1 3.99361375672033 3.01922361724691 0.390834459631984 0.0981529434578005
AT2G33990_at 5.24939062417966 6.00582154029515 6.30029008970518 6.25667724560555 7.02094338282213 6.65150762190042 6.37505726218636 6.4129013091699 6.27378971277551 6.41149345524722 7.64239711176161 6.50064275023517 6.82430043846314 6.74784122521573 6.43222388930113 6.62374015472915 7.24720069427393 6.89819279076656 6.74874997935262 0.194391103719164 0.202588624013831 0.203364895955390 0.201459846913757 0.195921352662645 0.201070914436722 0.206822070998711 0.194259901295468 0.216761703656439 0.203009986171559 0.199890358756459 0.194608158912103 0.194677385978391 0.210895240518387 0.196178554114479 0.194259901295468 0.214617456523025 0.199860192675122 0.195512657214260 2 2 - 14367581 14368264 14367829.818 14367355 14369320 - gene protein_coding_gene FALSE TRUE AT2G33990.1 IQD9 (IQ-domain 9); calmodulin binding similar to IQD10 (IQ-domain 10), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G15050.1); similar to Os06g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056849.1); similar to IQ calmodulin-binding re (GB:ABE78154.1); similar to Os01g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044716.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.466559116884367 3.88736598131034 0.00258234309681754 1 3.99344572884634 12.9553628499673 0.466559116884367 0.146024173853143
AT4G32960_at 6.04504063800139 6.32328771174113 5.8719037628822 5.85959004468397 6.55622236501663 6.37685142238404 5.54456855716795 5.43682745407424 5.55442311600932 5.39257928608682 5.65734297119984 5.66496907463921 5.83451483232432 5.98928685614428 5.71615077898059 5.8360271964114 6.14135292256813 5.51086289792932 5.34736481495233 0.179234546380832 0.181963462925062 0.191893734525732 0.191429086503538 0.181443773771950 0.202834835975239 0.181958184162018 0.189405638821389 0.182268833545458 0.178164581265976 0.193478793110989 0.181178980262965 0.187317896529835 0.190982250053777 0.187570134837746 0.184798467969782 0.199586965225186 0.183205566153923 0.198101065903014 4 4 - 15908818 15909918 15909130.818 15908621 15910183 - gene protein_coding_gene FALSE TRUE AT4G32960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32970.1); similar to PREDICTED: similar to MGC84305 protein [Strongylocentrotus purpuratus] (GB:XP_793273.1); similar to Os06g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056821.1) 0.345534255377007 3.88704535598131 0.00258376054016586 1 3.99296557073064 11.6144210846393 0.345534255377007 0.0602854350685556
AT1G26620_at 4.31234178007553 4.69315465577729 5.06430013167822 4.84007054139485 5.35733509334494 5.31942840616971 4.2727158903345 4.47782838927849 5.12284107002163 4.44593575778867 4.64775684120519 4.9781054581459 4.62488660129506 4.84765737711443 4.37578125630162 4.97605348624797 4.96674706729925 4.38990078648142 4.49123995543741 0.205208524283406 0.204516370059356 0.209939181088693 0.212090908331304 0.204133512781185 0.214939338511764 0.207931604623267 0.208814876529086 0.217532090852533 0.205194724684504 0.207379391533780 0.204133512781185 0.206522521618814 0.211012060099465 0.204133512781185 0.205368824573140 0.222722913579534 0.206661842456130 0.204133512781185 1 1 - 9195858 9196342 9196099.727 9195825 9199656 - gene protein_coding_gene FALSE TRUE AT1G26620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69360.1); similar to Os03g0758600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051334.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK16179.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98981.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) 0.372731106229632 3.88701867061118 0.00258387854916236 1 3.99292560696721 9.49841354617865 0.372731106229632 0.084567869233449
AT1G64460_at 4.39044431528026 4.83170840136033 4.97462650488083 4.61297911360599 4.53078416123437 4.66358273162367 3.74457419663772 3.78094934491659 3.78620742928369 3.16865011796002 3.57851907353706 3.82217063036075 3.15987344524982 3.89892275030845 3.46327890755864 4.02865789418797 4.06423975527519 3.89440559671229 3.41373786004904 0.219077429315395 0.226464354722135 0.215259496472948 0.213769276903182 0.213701480986609 0.212465522642971 0.211655960558876 0.216251442579928 0.215647643090464 0.212662608311033 0.217957483181938 0.215194710299680 0.217980494895296 0.217037955018770 0.225665415925527 0.211198914976192 0.216680854492117 0.229959478805647 0.215063285330717 1 1 - 23947374 23947972 23947630.545 23947162 23948343 - gene protein_coding_gene FALSE TRUE AT1G64460.1 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT2G46500.2); similar to Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago truncatula] (GB:ABE94037.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) 0.395567050419338 3.88665136043167 0.00258550345007815 1 3.99237551701089 8.03868458406565 0.395567050419338 0.101567231574166
AT3G29240_at 10.5131195003607 10.7404193537549 11.0908515143229 11.2326788750131 10.1853171834192 9.99978666235963 10.5029062103496 10.5908203262930 10.6114136578709 10.5004183917736 9.81476174291265 9.88611696298662 9.75350612195187 9.84278949590057 9.6300151452327 10.1894789863196 9.86480630015917 9.89040407377846 10.6483127333043 0.120093473214920 0.114621389954754 0.128717510003528 0.119366929150691 0.114621389954754 0.119038865474158 0.122325176012178 0.117401067539702 0.118246172546603 0.117024005005686 0.118899116258413 0.119420090704974 0.114621389954754 0.118800847136344 0.123584521165957 0.117713373488404 0.121421545896137 0.121855039251226 0.117498965137557 3 3 + 11193537 11194081 11193790.818 11192728 11194223 + gene protein_coding_gene FALSE TRUE AT3G29240.1|AT3G29240.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33780.1); similar to Os10g0330400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064365.1); similar to Protein of unknown function DUF179 [Medicago truncatula] (GB:ABE94310.1); contains InterPro domain Protein of unknown function DUF179; (InterPro:IPR003774) -0.343693931452618 -3.88649539474704 0.0025861937294236 1 3.99214193472567 20.8298373438865 -0.343693931452618 0.0584122144634056
AT1G71980_at 9.41910822214003 9.6513237578029 9.63700593905723 9.7540695735214 10.1735087569082 9.96410011832298 9.3351379932978 9.25275000441584 9.49368088030133 8.97861196964032 9.20255595484168 9.42893592034721 9.50924665610044 9.21821938053341 9.19297163843638 9.38047988506508 9.46387913511417 9.52012402370863 8.95630288148898 0.107487924938854 0.108687360795157 0.113062806430873 0.114427532262782 0.108167354507123 0.112041457648899 0.105052122622126 0.108802741059669 0.122722785185224 0.111441970714977 0.108758877933845 0.104877560576712 0.107932484601794 0.119607982487831 0.109929442543052 0.107220086403039 0.119904529895059 0.108061499965312 0.107085910678082 1 0|1 /|+ 27102992 27103489 27103285.4 27101623 27103801 + gene protein_coding_gene FALSE TRUE AT1G71980.1 protease-associated zinc finger (C3HC4-type RING finger) family protein similar to protease-associated zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22670.1); similar to ReMembR-H2 protein JR702, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94173.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.344638716498241 3.88533625173383 0.00259132991109127 1 3.9904058407418 18.9020839547226 0.344638716498241 0.0595136242202835
AT4G32070_at 3.04735995556790 3.23566210061639 3.55679496939239 3.62124483199701 3.39757877778332 3.47595961829849 2.94233641896802 3.87648052331901 3.11019632871394 2.81211266788299 3.85704042861877 3.72793193655364 3.90355520911182 3.17973619247172 4.0241411412351 3.90494093241086 3.58930916317917 3.82470504878312 3.03519229242766 0.181486638295522 0.182284783230347 0.182109968902353 0.183244300042737 0.180861274255251 0.180312654429616 0.189885349564701 0.182172974501909 0.180312654429616 0.181408345956958 0.182776945063417 0.187384323925514 0.182413238534969 0.195818769912749 0.188667850853727 0.185732330039650 0.181907789898731 0.182400380102062 0.185850946094916 4 4 - 15504670 15505085 15504873.455 15504668 15507182 - gene protein_coding_gene FALSE TRUE AT4G32070.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT2G25290.1); similar to Os08g0296900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061478.1); similar to Os09g0556200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063897.1); similar to putative octicosapeptide/Phox/Bem1p (PB1) domain-/tetratricopeptide repeat (TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31284.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.50151052164365 3.88352014428703 0.00259939841670220 1 3.98768542620258 6.76280403426968 0.50151052164365 0.165842018468458
AT3G11510_at 10.4073191483329 10.6793744895289 9.87965803080441 10.0177685244533 10.2981232590107 10.0109390941272 10.7021419855571 10.849104098671 10.2293378819331 10.1128266341410 10.0220133629304 10.4182420884356 9.8443509346981 9.9471539374604 10.6116991380617 9.56546354941767 9.8754183810082 9.70380615568895 10.0068303164358 0.0959795394290236 0.0967239331528677 0.0927335177054697 0.0935366496422078 0.088703259024341 0.088589466660319 0.0944366563722564 0.0937649146333995 0.0949939662104587 0.0890466570306565 0.0930779162557377 0.0919380077735569 0.0922525723539494 0.0914185387080358 0.0945593456242081 0.0936119237445968 0.094284860551486 0.0915777862869379 0.0912859042108952 3 3|0 -|/ 3623789 3624521 3624137.111 3623463 3624945 - gene protein_coding_gene FALSE TRUE AT3G11510.1 40S ribosomal protein S14 (RPS14B) Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [Arabidopsis thaliana] (TAIR:AT2G36160.1); similar to cytoplasmic ribosomal protein S14 [Brassica napus] (GB:AAO41731.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) -0.362837935398815 -3.88185930340804 0.00260679994398435 1 3.98519720775631 20.4129786059603 -0.362837935398815 0.0768411863366834
AT4G16800_at 5.42372857895212 5.90786095805602 5.71161015357446 6.18290078070009 6.06623843958996 6.1408742085099 5.67557705224042 5.55063898096487 4.87597465112127 5.32238000684615 5.76105270562429 5.61667440099622 4.76785849329908 5.31199765489996 5.79194647611919 5.60098458926952 5.90576682352927 6.05186315171726 5.23075362790878 0.234797721397977 0.243748541836131 0.241429849839482 0.239327045454423 0.247032223864069 0.239883046576748 0.236019989968941 0.245270699548777 0.253301653607895 0.233837960674095 0.24153276882591 0.241514914537265 0.241716218377419 0.251589264095826 0.241886039130910 0.235202372621806 0.245439315887935 0.233837960674095 0.238322718831642 4 4|0 -|/ 9454956 9456081 9455615 9454835 9456328 - gene protein_coding_gene FALSE TRUE AT4G16800.1 enoyl-CoA hydratase, putative similar to ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1), delta3,5-delta2,4-dienoyl-CoA isomerase/ enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT5G43280.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96201.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.421968222340011 3.88043665794619 0.00261315735050821 1 3.98306555504919 11.2044557101854 0.421968222340011 0.119605568200909
AT1G58220_at 6.35769092463381 6.33017511240174 5.30910574525883 5.6448575582194 5.96454855370626 5.81377621278197 5.62586381806616 5.40524043356386 6.63745177576299 5.62578962128216 5.60322487157784 5.58609878468894 5.70982502723565 6.3998976147175 5.4874162696345 5.86962009954638 5.51124467462304 5.68391180823685 6.34996847794725 0.225110227989228 0.216882364401517 0.215560364656045 0.219232613492560 0.219687954815504 0.224087565986274 0.218924339232091 0.219498836367231 0.217809068717913 0.219331016092903 0.217152869543794 0.221268374273818 0.214480465874396 0.223796915960762 0.21982086651984 0.214480465874396 0.228606172663009 0.220468185391590 0.221088938526306 1 1 - 21562064 21562617 21562312.545 21561908 21566630 - gene protein_coding_gene FALSE TRUE AT1G58220.1 myb family transcription factor similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G09710.1); similar to Os02g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047100.1); similar to putative Myb-family transcription factor [Oryza sativa (japonica cultivar-group)] (GB:CAD23060.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.359834476278161 -3.87983202795494 0.00261586414526594 1 3.98215951290877 11.7743113875524 -0.359834476278161 0.0744121725850674
AT2G39710_at 7.70250022971395 8.05864237409002 8.28508440585937 8.67805533230064 7.74519711800008 7.34740499328262 7.64134659001339 7.97434772824818 3.79885423156747 4.93591216944345 4.71616216777593 5.45524583512638 5.26232380131206 5.1589518483309 3.95340230805456 4.81932114496608 5.67378581576219 4.00884914168038 3.80240297055792 0.264041062544709 0.264329763911719 0.264047927091709 0.269554920709124 0.266872758706224 0.264041062544709 0.265937870809973 0.267396802204916 0.273196000421473 0.273236308402467 0.264041062544709 0.265013108557098 0.264041062544709 0.265862774537611 0.266847019468009 0.264041062544709 0.272579465634782 0.264327643429970 0.264041062544709 2 2 - 16569169 16569695 16569459.909 16568866 16570458 - gene protein_coding_gene FALSE TRUE AT2G39710.1 aspartyl protease family protein Encodes a Cysteine-rich peptide (CRP) family protein similar to PCS1 (PROMOTION OF CELL SURVIVAL1), aspartic-type endopeptidase/ peptidase [Arabidopsis thaliana] (TAIR:AT5G02190.1); similar to Os01g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044781.1); similar to Peptidase aspartic, catalytic [Medicago truncatula] (GB:ABE83471.1); similar to Os03g0271900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049694.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.43583751626537 3.87883769038818 0.00262032190522134 1 3.98066938601082 12.4591032039714 0.43583751626537 0.128386467443544
AT4G29480_at 9.35139337102295 9.30268489457613 8.89030830314351 8.89467264275462 8.62080156817565 8.25389457677653 9.23144619019359 9.44718413013144 9.13876603840042 8.8815524801413 8.93398182419583 9.34008866027071 8.76964550097598 8.94705463159673 9.31387397568879 8.93760970541161 8.17191858276793 8.73481320439914 8.81224039078656 0.124433352457124 0.125926025494308 0.124269248974302 0.126010458584593 0.128449497072835 0.135064399236575 0.122121828888369 0.119661110915053 0.128316681411574 0.123389709086286 0.130375497974368 0.119452020389829 0.119452020389829 0.130636488911900 0.123469326273724 0.123261527830078 0.155433860054791 0.128871480705790 0.124093333018245 4 4|0 -|/ 14486275 14487186 14486731.7 14486051 14487783 - gene protein_coding_gene FALSE TRUE AT4G29480.1 mitochondrial ATP synthase g subunit family protein similar to hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT2G19680.2); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 complex, subunit G, mitochondrial; (InterPro:IPR006808) -0.35941045810727 -3.87858313103508 0.00262146439911169 1 3.98028787908305 17.9179529914832 -0.35941045810727 0.074142394764586
AT1G23440_at 7.59759813847109 7.77722976410014 8.14643679347795 8.10353181299174 8.31854282477745 7.95759196613466 7.70669893272825 7.59387289570192 7.23246525333973 7.41406502001701 7.48026828143531 7.38173183496615 7.90355346064284 7.68739114413577 7.13319955452114 7.59675199310145 7.78226218642652 7.51474124318908 7.27446062141472 0.0903317472552695 0.0924060199878475 0.094156530426162 0.0962473782517506 0.0919487832346582 0.0929927944513858 0.0912010708314733 0.0909440987366159 0.097497759434393 0.0935013645586446 0.0918274174535548 0.0943547971268806 0.0916020296708068 0.0940136380975414 0.0952546275154031 0.0903462922264346 0.0960186019792779 0.0945568484274865 0.0915344346458382 1 1|0 +|/ 8321948 8323959 8322747.111 8321669 8324229 + gene protein_coding_gene FALSE TRUE AT1G23440.1|AT1G23440.2 pyrrolidone-carboxylate peptidase family protein similar to pyrrolidone-carboxylate peptidase family protein [Arabidopsis thaliana] (TAIR:AT1G56700.2); similar to Os07g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060416.1); similar to hypothetical protein DDBDRAFT_0189325 [Dictyostelium discoideum AX4] (GB:XP_647079.1); similar to Os09g0396300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063100.1); contains InterPro domain Peptidase C15, pyroglutamyl peptidase I; (InterPro:IPR000816)|similar to pyrrolidone-carboxylate peptidase family protein [Arabidopsis thaliana] (TAIR:AT1G56700.2); similar to Os07g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060416.1); similar to putative pyrrolidone carboxyl peptidase [Musa acuminata] (GB:ABC60337.1); similar to Os09g0396300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063100.1); contains domain Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) (SSF53182); contains domain no description (G3D.3.40.630.20) 0.357833206986781 3.87758223517637 0.00262596155942573 1 3.97878775791646 15.3336801046610 0.357833206986781 0.0728318794939914
AT3G22210_at 11.0758147130887 11.0962589091519 10.9536303667331 10.8194158896683 11.2838667062983 11.0263630685775 11.6760267597906 11.6202439616351 11.4982746803587 11.5639378108607 11.3544845450186 11.1622777955430 11.2089628111102 11.2001398622644 11.0459869626225 11.3770293998959 11.0562397515642 11.0377192882594 11.4589868303445 0.0811894652317302 0.0784739578452114 0.0824320077268607 0.0824161278478161 0.0784739578452114 0.08353334071399 0.0818167120069714 0.0830202476101091 0.0793785380269329 0.0831145881326359 0.0804597683777884 0.0801069306542669 0.0832848004310158 0.08309200394254 0.0812571699766752 0.0796104524023331 0.0857234168901004 0.0819914537846033 0.0809540055297362 3 3|0 -|/ 7839187 7839409 7839306.4 7838791 7839474 - gene protein_coding_gene FALSE TRUE AT3G22210.1 similar to fortune-1 [Cycas edentata] (GB:AAL35744.1) -0.336489233291912 -3.87685590785120 0.00262923005985315 1 3.97769907116586 22.5376632931460 -0.336489233291912 0.0512929279736854
AT3G05890_at 0.966696792042135 1.72436081095707 0.822634598392651 1.32241532730315 1.58454611962950 0.975881323600248 1.67458012834914 1.75142243270068 4.71751724759295 2.46554925101141 6.57188882317333 5.87195047509426 3.45083026110271 3.33706829693891 7.62445496058036 4.99068167073154 1.62404842045712 3.88518474748433 2.49602457484124 0.242933469707179 0.241173659187147 0.250204691189095 0.243169271107261 0.244468261093472 0.256225928245471 0.249638716031153 0.246997634882072 0.285587247783246 0.244245056735592 0.252366687357673 0.24328137136757 0.243739029880692 0.251991161156457 0.255142999379989 0.254917326235360 0.273477778029204 0.263445680787979 0.241173659187147 3 3 - 1758185 1758434 1758285.818 1757637 1758498 - gene protein_coding_gene FALSE TRUE AT3G05890.1 RCI2B (RARE-COLD-INDUCIBLE 2B) Identical to Hydrophobic protein RCI2B (Low temperature and salt-responsive protein LTI6B) (RCI2B) [Arabidopsis Thaliana] (GB:Q9ZNS6;GB:Q9M9K9); similar to RCI2A (RARE-COLD-INDUCIBLE 2A) [Arabidopsis thaliana] (TAIR:AT3G05880.1); similar to Protein of unknown function UPF0057; Bacterial extracellular solute-binding protein, family 3 [Medicago truncatula] (GB:ABD33189.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 0.545127033507959 3.87606709102001 0.00263278454912073 1 3.97651664032632 5.30075576566875 0.545127033507959 0.189588719038234
AT1G78650_at 2.54203188751111 2.11472605364853 2.72240989372103 2.90069500893939 2.06211649242941 2.06887398196134 2.57863150281711 2.12455272568678 1.58274624715517 1.52483183085273 2.13112995584646 2.68253663497549 1.64207315823857 2.16782395532433 2.39776504408088 2.80397261587620 2.61032701124029 2.17859677041047 1.70786997405952 0.198259547855665 0.197082598361191 0.202279047523591 0.197082598361191 0.199584802513522 0.197806522577721 0.197082598361191 0.201805285666570 0.211907855977587 0.207043088800661 0.201325564324543 0.197082598361191 0.205108078406905 0.199650399235866 0.197082598361191 0.197082598361191 0.197082598361191 0.201001712964491 0.21523198675363 1 1|0 +|/ 29589657 29590278 29589827.8 29587822 29590534 + gene protein_coding_gene FALSE TRUE AT1G78650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os01g0204000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042334.1); similar to DNA polymerase delta p66 subunit -like [Oryza sativa (japonica cultivar-group)] (GB:BAD72984.1); contains domain SUBFAMILY NOT NAMED (PTHR17598:SF3); contains domain FAMILY NOT NAMED (PTHR17598) 0.410083547203425 3.87550806985775 0.00263530657519213 1 3.97567862176996 4.35521844030845 0.410083547203425 0.112233528868374
AT4G23100_at 10.0946102292778 10.1704156120587 10.4590519714068 10.4163997557965 10.4431074722619 10.0440830886144 10.3070036876255 10.3470063761016 10.0794645306823 10.3451800720349 10.9346520154550 10.9251318810408 10.6999948748565 10.7930165297354 10.8757061968362 10.707850765499 10.3287425128395 10.7094773987219 10.0149880945064 0.0907329752594513 0.084100416800906 0.0839986655657458 0.0857744966346407 0.088065412595123 0.0901002886561927 0.0869703502751263 0.0898483618323035 0.100377605017816 0.0859026286233988 0.0855591635226886 0.085125946918097 0.0837811584448839 0.0870065664006328 0.0858377536537406 0.0837811584448839 0.0978810143052955 0.0898455527097265 0.0924039123131715 4 4|0 -|/ 12103472 12104615 12104014.9 12103172 12107310 - gene protein_coding_gene FALSE TRUE AT4G23100.1|AT4G23100.2 RML1 (PHYTOALEXIN DEFICIENT 2, ROOT MERISTEMLESS 1); glutamate-cysteine ligase|RML1 (PHYTOALEXIN DEFICIENT 2, ROOT MERISTEMLESS 1) Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis. Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective. Identical to Glutamate--cysteine ligase, chloroplast precursor (EC 6.3.2.2) (Gamma- glutamylcysteine synthetase) (Gamma-ECS) (GCS) (GSH1) [Arabidopsis Thaliana] (GB:P46309;GB:O82759;GB:P92951); similar to gamma-glutamylcysteine synthetase [Brassica napus] (GB:CAK24967.1); similar to Glutamate--cysteine ligase, chloroplast precursor (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) (GB:O23736); similar to glutamate-cysteine ligase [Brassica juncea] (GB:CAD91713.1); contains InterPro domain Glutamate--cysteine ligase, plant; (InterPro:IPR011556); contains InterPro domain Glutamate--cysteine ligase, GCS2; (InterPro:IPR006336) 0.355589442609587 3.87521570931734 0.00263662655938317 1 3.97524033290478 20.7318926512834 0.355589442609587 0.0710128165870227
AT2G48110_at 2.80573276295147 2.51844175251960 3.23006194027614 2.53621299128834 2.4899273512164 2.64784392156355 2.64714381248383 2.13228508617400 2.11565040960894 1.67685161473541 2.67540756018266 2.46015481148775 2.77567709912917 2.64749305589697 2.72768554710174 2.72471278385360 3.13873479015402 1.98145682406061 1.79401403885144 0.202452639718672 0.199707411541482 0.197234265526148 0.201764662084687 0.202110254576794 0.196498011426141 0.208607619986128 0.207407532128626 0.196962856890943 0.203425512175789 0.201977343531705 0.196498011426141 0.203370908082522 0.198422078357201 0.203082148049316 0.203327710120622 0.206519795037516 0.200683972875317 0.199312442538632 2 2 + 19684485 19685147 19684818.636 19680363 19686781 + gene protein_coding_gene FALSE TRUE AT2G48110.1 structural constituent of ribosome similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23590.1); similar to Os07g0681500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060654.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80015.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848) 0.489676992735969 3.87515461378811 0.00263690248743128 1 3.97514874083441 4.87774986733345 0.489676992735969 0.159921577942985
AT2G22070_at 1.0186975760508 0.913479708421431 1.28488095729518 1.06755967082026 0.997158286654041 1.27798407756057 0.876730545535758 0.755986788354329 1.02781549378597 0.277599298602890 1.29375918813572 0.862363372395492 0.611790533519757 0.919358486356703 1.37560624001303 0.925261558902726 1.08960772609918 1.10628301427546 0.450845818409661 0.186055989935349 0.186312817205024 0.186358606016091 0.193112224460403 0.188946286544081 0.182439220088655 0.187641834093824 0.185908436922387 0.194987149257051 0.19363275045927 0.191930302077682 0.187950865369444 0.188058331690366 0.188056988109818 0.189976868391873 0.188848824854304 0.191887979385608 0.198428848506705 0.188260917084173 2 2 + 9392445 9393011 9392712.273 9390682 9393144 + gene protein_coding_gene FALSE TRUE AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G25360.1); similar to Os02g0106300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045627.1); similar to Os03g0775400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051430.1); similar to PPR868-14 [Physcomitrella patens] (GB:BAD67154.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.351627827427344 3.87443427138568 0.00264015805788523 1 3.97406879400451 1.82827168561743 0.351627827427344 0.067411738032689
AT1G04590_at 6.9380309497232 6.63993217714623 6.53313278462136 6.35669156385912 6.3925286945729 6.84300236367136 6.8928879644675 7.20992848107097 6.33925485232261 6.34570229308347 5.81377259231246 6.27205054671679 5.36132140457948 6.16046350127016 6.29911982263476 5.86231080886033 6.22487536504416 5.76587278177533 6.52077377552062 0.185170795623975 0.183506424134084 0.179378253804924 0.183118892065737 0.187822565471875 0.184812749546229 0.190800183293033 0.177437851349081 0.181013269490912 0.177437851349081 0.178225618846313 0.179218639218282 0.196681540253584 0.180756871279169 0.180644681440623 0.179518231397009 0.183251647511582 0.184173177515516 0.178020055425442 1 0|1 /|- 1259070 1259514 1259322.3 1258576 1261425 - gene protein_coding_gene FALSE TRUE AT1G04590.1|AT1G04590.2 EMB2748 (EMBRYO DEFECTIVE 2748) similar to EMB1417 (EMBRYO DEFECTIVE 1417) [Arabidopsis thaliana] (TAIR:AT4G21190.1); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os11g0125500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065620.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.2); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os11g0125500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065620.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains domain TPR-like (SSF48452) -0.410396497748584 -3.8730873016803 0.00264625685410459 1 3.97204921545213 12.9117087023290 -0.410396497748584 0.112610008489669
AT1G27960_at 1.36738666369281 2.01862412024418 2.12065043230173 2.04536037557107 1.63073989514231 1.62231415824318 1.57207792213384 1.39407905082011 0.784652579516155 0.89263990515522 1.37151732168155 1.70103631802504 1.24921187092195 1.27896294159176 1.82966730561087 2.01281832299076 1.72432802298345 1.62594919834039 1.41329546695879 0.218072461301776 0.214469606819026 0.216017876379731 0.217265396708222 0.217680661143053 0.224385389578967 0.216797432903255 0.223052723534644 0.236051284675163 0.222912009668221 0.213829617965411 0.218185281909601 0.21923149477501 0.214296746762666 0.219189089474000 0.216584421073916 0.215318168753647 0.227576269701857 0.212785510623576 1 1|0 -|/ 9742357 9743510 9742838.2 9742176 9745774 - gene protein_coding_gene FALSE TRUE AT1G27960.1 ECT9 (evolutionarily conserved C-terminal region 9) encodes a protein whose C-terminal region is similar to ECT1 and ECT2, which bind to CIPK1. similar to ECT5 [Arabidopsis thaliana] (TAIR:AT3G13060.2); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE91083.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.417857352491669 3.8718433979322 0.00265190197604375 1 3.97018395622745 3.03609527559112 0.417857352491669 0.117566849333938
AT3G25870_at 3.79290302056477 3.98792688410336 3.99034002016481 4.24954264624513 3.47471872362243 4.29466008714361 2.14596268020643 3.08398400863021 1.69781886820392 1.97590455535238 2.20998865807630 2.19903396373281 2.48640454705524 2.31937769863792 2.21998722394926 2.27169890200359 3.24693907252544 2.20449524750983 2.10190313873207 0.225049605597769 0.223348171228347 0.23345441787859 0.226597643683153 0.216178832188379 0.224119234523867 0.215916157878053 0.220321837381852 0.232135314377027 0.220964500084734 0.227276292917309 0.215916157878053 0.217313766765014 0.218178529537168 0.223419663219470 0.217595725472985 0.219524464836167 0.222995537709754 0.215916157878053 3 3 - 9464911 9465366 9465144.273 9464553 9465520 - gene protein_coding_gene FALSE TRUE AT3G25870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13360.1); similar to Os01g0131300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041925.1) 0.609576515503989 3.86982359520734 0.00266109494440427 1 3.96715478615915 5.7874795179763 0.609576515503989 0.222791206032702
AT4G13345_at 5.91791074177439 5.60714384500433 6.36973786593777 6.53794571121054 6.92789404868859 5.88620253412816 6.64998778214737 6.28974839076142 4.38950109761629 5.45997467167925 5.66954690499767 5.44364129191622 6.07569758492198 5.83551935709775 4.93861842230136 6.4768676957046 6.8646371393012 5.03390496451517 5.08036925282481 0.220881477343523 0.221658575256744 0.217657973620628 0.220208739457031 0.216900521540615 0.230260809129583 0.223423147319024 0.226624202483048 0.253951534199514 0.216900521540615 0.216900521540615 0.219401217818516 0.218445358472785 0.225735356299282 0.230806550585703 0.222172383709711 0.228841024302046 0.230671664707829 0.216900521540615 4 4|0 +|/ 7768333 7768892 7768523.375 7765069 7769684 + gene protein_coding_gene FALSE TRUE AT4G13345.1|AT4G13345.2 MEE55 (maternal effect embryo arrest 55) similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT3G24460.1); similar to TMS membrane protein/tumour differentially expressed protein [Medicago truncatula] (GB:ABE91594.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) 0.564968256395215 3.86967128084551 0.00266178953056730 1 3.96692633310178 11.6577809536905 0.564968256395215 0.20030758314595
AT1G25350_at 8.85765211838334 9.04817635181096 8.77702441824234 8.66591365525689 8.97598807941816 8.43390201200788 9.30491467141406 9.2382323714875 8.82348171516428 9.12273283687066 8.32256755023893 8.60567320141262 8.65354044210938 8.49080649759924 8.64101057096028 8.72220923769037 8.77028387591665 8.73552320936004 9.07532154227042 0.120341333808346 0.119158798963685 0.129356411137437 0.127412356478670 0.121322190769773 0.126234819869587 0.121894321535154 0.123614909105255 0.121330747674931 0.123870902254292 0.128091640843712 0.122092815004536 0.123738001150206 0.129324872877698 0.126641718727175 0.121314910488755 0.124234071050160 0.119158798963685 0.121051345806236 1 1|0 -|/ 8889286 8890220 8889749.333 8889097 8894245 - gene protein_coding_gene FALSE TRUE AT1G25350.1 OVA9 (OVULE ABORTION 9); glutamine-tRNA ligase similar to tRNA synthetase class I (E and Q) family protein [Arabidopsis thaliana] (TAIR:AT5G19720.1); similar to Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS) (GB:P52780); similar to glutaminyl-tRNA synthetase [Danio rerio] (GB:AAT68085.1); similar to glutamine-tRNA ligase [Dictyostelium discoideum AX4] (GB:XP_636180.1); contains InterPro domain Ribosomal protein L25-like; (InterPro:IPR011035); contains InterPro domain Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; (InterPro:IPR007638); contains InterPro domain Glutaminyl-tRNA synthetase; (InterPro:IPR004514); contains InterPro domain Glutamyl-tRNA synthetase, class Ic; (InterPro:IPR000924); contains InterPro domain Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1; (InterPro:IPR007639) -0.394256855991749 -3.8686674721439 0.00266637182196492 1 3.96542066550946 17.725165720384 -0.394256855991749 0.101933298323758
AT1G22370_at 6.55534189565459 6.58018317094837 7.51327959890346 7.26100853812878 8.16051250499115 7.14185078446216 6.8537779414802 6.32167333565139 4.48522324013638 6.48021283061214 5.86870816434624 5.26626660686252 6.9322596396287 5.81178268473158 4.44972062004091 6.33662879799537 6.82387141077991 5.77930482258732 6.15727530849592 0.236699284145374 0.234559426972718 0.242392081840579 0.232438924650499 0.242796194974182 0.242990661898325 0.237070030256086 0.23561426255484 0.249332409496415 0.240190569833142 0.236155162254225 0.237554998201773 0.232438924650499 0.247208436087642 0.246874254365846 0.234095220597313 0.242887132077721 0.237883707179869 0.248946637294725 1 1 - 7898114 7898660 7898375.545 7898002 7899868 - gene protein_coding_gene FALSE TRUE AT1G22370.1|AT1G22370.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glycosyltransferase 85A8 [Stevia rebaudiana] (GB:AAR06913.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.571208077155587 3.86742828695947 0.00267203987774032 1 3.96356176105027 12.8565226228374 0.571208077155587 0.203665914902860
AT4G30210_at 8.18002502231327 8.38933710279999 8.44032967006113 8.58313174566327 8.77666123708971 8.62123144408258 8.94600583772504 8.99633796372647 8.48261447288815 8.49392410752323 9.55039200706563 9.42270404560933 9.18618295748708 9.44940231495366 8.69532490899735 9.2595298194889 8.8634161803929 8.87602432792385 8.42592364302012 0.154881831600849 0.151574376935791 0.165144865206993 0.150880493496644 0.153268375255636 0.15781114706482 0.155981676059153 0.162158467962977 0.179585630628790 0.153970680591394 0.151104966012797 0.156010010729449 0.154931750028039 0.161388468862667 0.158502086819776 0.153433923052163 0.167948785764976 0.162669085639219 0.155032337788992 4 4 + 14799786 14800386 14800010.909 14796770 14800928 + gene protein_coding_gene FALSE TRUE AT4G30210.1|AT4G30210.2 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. similar to ATR1 (ARABIDOPSIS CYTOCHROME REDUCTASE) [Arabidopsis thaliana] (TAIR:AT4G24520.1); similar to putative NADPH-cytochrome P450 reductase [Pisum sativum] (GB:AAC09468.2); similar to NADPH-cytochrome P450 oxydoreductase isoform 2 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK15260.1); similar to NADPH-cytochrome P450 oxydoreductase isoform 3 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK15261.1); contains InterPro domain FAD-binding; (InterPro:IPR003097); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavodoxin-like; (InterPro:IPR001094); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.336398352506158 3.86721560716342 0.00267301393548695 1 3.96324269931648 17.4318122419579 0.336398352506158 0.0521741080098718
AT4G38050_at 2.56392455127418 2.78743643161738 2.30461893326140 2.56764162381820 2.47186229902674 2.71520249739652 2.42629088156984 2.67310347337401 2.02941368165119 2.26871108593592 3.20581150271067 3.56965669841546 2.73122404796203 3.78828511132832 3.94160214764876 2.77964297612417 2.47982977949666 2.69093566782397 2.62965635931483 0.207515899425660 0.199281524388124 0.199281524388124 0.199762175625528 0.205326012240061 0.208650131520774 0.209388265053633 0.204959010796774 0.210935472861374 0.201843363545209 0.199281524388124 0.201243625107222 0.208413056789431 0.207418487344886 0.202727696435763 0.199281524388124 0.206729283683688 0.208565942640241 0.199281524388124 4 4 - 17869571 17870066 17869873 17869373 17872476 - gene protein_coding_gene FALSE TRUE AT4G38050.1 permease Identical to Nucleobase-ascorbate transporter 11 (AtNAT11) (NAT11) [Arabidopsis Thaliana] (GB:Q6SZ87;GB:Q8GWX5;GB:Q8LC52;GB:Q9SZK5); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G27810.1); similar to putative permease 1 [Oryza sativa (japonica cultivar-group)] (GB:BAB61205.1); similar to Os07g0490500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059675.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.370627809860821 3.86401134980605 0.00268773387454828 1 3.95843496093155 5.29257701995365 0.370627809860821 0.08464998625171
AT3G24030_at 6.700400223923 7.07292883569407 6.78929469835869 6.75100685569948 6.73769245070125 7.0454933267783 8.12498754665428 8.0087834638196 6.52209860629897 7.18502982203598 6.94396020792298 6.60860302000017 6.66760073717216 6.84931253655978 6.4905512926684 7.40903586926075 7.20425866804364 6.74610195402667 7.18576807605924 0.222619282185694 0.204282002093137 0.202412554581705 0.202093587926031 0.20149572417663 0.205609316461666 0.203531783056891 0.203743096485167 0.199291741675242 0.201783618777274 0.196993074341563 0.206891075488375 0.209304835427572 0.216983831907542 0.201197457614241 0.199633152489499 0.206465297098086 0.206172716217232 0.203633689324545 3 3 - 8679953 8680545 8680257.545 8679577 8680831 - gene protein_coding_gene FALSE TRUE AT3G24030.1 hydroxyethylthiazole kinase family protein similar to Os01g0363600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043033.1); similar to hydroxyethylthiazole kinase [Chlamydomonas incerta] (GB:AAV41809.1); contains InterPro domain Hydroxyethylthiazole kinase; (InterPro:IPR000417); contains InterPro domain Hydroxyethylthiazole kinase, monofunctional; (InterPro:IPR011144) -0.372636991864773 -3.86370558272447 0.00268914291789092 1 3.95797611084054 14.0684368604560 -0.372636991864773 0.0862653273993474
AT4G25320_at 4.04406464942635 4.13841245903138 3.46033940784911 4.08908314942005 4.70623571263608 4.44173174386509 3.61071473045729 3.53356288458553 2.9046547229599 2.88595012723982 3.56586194854168 3.84222254353206 3.9599542692562 3.90501530378162 3.15904781329324 3.48306745280002 3.34803218017826 3.08343291633858 3.34366691246272 0.211769026193274 0.205646551444074 0.202902307726355 0.220352405626179 0.210467600386477 0.207510018579496 0.207695319828281 0.211842476601866 0.211009130893771 0.215278746171812 0.202902307726355 0.202902307726355 0.204065072143274 0.209524511499599 0.207760118093270 0.206595803506641 0.216368239646624 0.206908593658716 0.212650662241616 4 4|0 +|/ 12955583 12956314 12956055.3 12954087 12956553 + gene protein_coding_gene FALSE TRUE AT4G25320.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G51590.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE87426.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.420615435905921 3.86358188208703 0.00268971317594473 1 3.95779047570464 7.29706137100187 0.420615435905921 0.119912642067781
AT1G56510_at 7.37756018939708 7.23739196208271 6.71961350078921 7.28533166880748 7.59197177406012 5.97183006542497 7.9870635036696 7.16878261282673 7.37305790503581 6.15605444191217 4.76655145177828 5.26805541459099 5.57957256842943 5.91983305250955 4.93814171394633 5.89283726157312 5.24976063076607 5.25403219170688 5.89790651024122 0.267931762044482 0.258895185725105 0.270524268217508 0.258103595352726 0.255389970131843 0.28307167031147 0.255466362766025 0.259532291423442 0.262779356004238 0.264691445783041 0.255389970131843 0.257935395911813 0.255389970131843 0.25652894706641 0.272298831745426 0.257274979802003 0.265100757322883 0.273729557189516 0.255389970131843 1 1 + 21175458 21175901 21175658.364 21171254 21177297 + gene protein_coding_gene FALSE TRUE AT1G56510.1 disease resistance protein (TIR-NBS-LRR class), putative similar to RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G64070.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56540.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56520.1); similar to TIR-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81414.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.8337938657287 -3.86352668754506 0.00268996766242598 1 3.95770764568386 13.0845786536617 -0.8337938657287 0.329900789712992
AT3G57830_at 2.00569882267156 2.03932723804493 1.24775171559835 1.67594131261950 1.52412080938833 1.77499239164365 1.9717557946971 2.37893105630576 2.23033204057286 3.02348715169058 2.30178050681916 2.84812021355285 2.71991667890773 2.18316191616958 2.81744158575998 2.74722632239002 2.363383831442 2.22556489445049 3.13755580977736 0.269745779718881 0.25334044874601 0.265806845175882 0.252788203295127 0.254913538885092 0.260539858875056 0.262470404078603 0.276722376284846 0.256013113646417 0.258575654914874 0.255561627885067 0.262070133109578 0.256832550755330 0.267782073450661 0.261449043901584 0.258724751736 0.280348602112674 0.273219893540958 0.257352238579592 3 3 + 21432796 21433270 21432995.7 21430494 21433523 + gene protein_coding_gene FALSE TRUE AT3G57830.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42290.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.407263588805585 -3.86294403259122 0.00269265564470857 1 3.95683323555707 4.48878963980452 -0.407263588805585 0.111241369355308
AT2G07300_at 2.43115168062478 2.84920021769282 2.50821577734200 3.10820074401088 1.71648702942107 2.33847762080764 2.33627923482665 2.96468228488513 3.20752403657090 3.51764092228254 2.31586040032818 2.41304440363967 2.50729191492471 2.46482191400518 2.30187678822256 2.38176570460647 2.46827492373303 3.06209585312698 3.42282771696945 0.18563905495013 0.182862715533692 0.188064804925263 0.18717959206235 0.183802416142877 0.195630214646903 0.18476780882108 0.194107649041486 0.184492317058568 0.194122319478948 0.186211055857306 0.189261998013806 0.189020838377340 0.186504613890044 0.183957433568878 0.187519025591802 0.195355521108041 0.183397349562153 0.189372994343342 2 2|0 +|/ 3031430 3031718 3031616.1 3030795 3031771 + gene protein_coding_gene FALSE TRUE AT2G07300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.560384149531447 -3.8615323727857 0.00269917966625130 1 3.95471452517984 5.46760843025019 -0.560384149531447 0.198561599185481
AT4G30600_at 10.0980247628902 10.0365064888806 10.3692915814852 10.3318125382948 10.5634325766981 10.3503271386225 9.79305404022686 9.76231946154178 9.69084840030295 9.64240124995888 9.97352135341062 9.76599951646907 9.92826614836675 9.81813144377604 9.47377362510237 9.93862563328972 9.9625183813257 9.66816136932954 9.60236982745838 0.095810797327166 0.0976448191644482 0.099269847437319 0.0990938879586087 0.0980086263414737 0.101938215472291 0.101357826856251 0.10249261529871 0.106697254838897 0.100191247806056 0.098099443599348 0.0970594439477995 0.0984421720211662 0.0987115277176863 0.101179094091954 0.0946212124405788 0.101399800349076 0.100430389096572 0.0999847583321913 4 4|0 -|/ 14938201 14938958 14938616.222 14937907 14941024 - gene protein_coding_gene FALSE TRUE AT4G30600.1 signal recognition particle receptor alpha subunit family protein similar to ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT1G15310.1); similar to putative signal recognition particle receptor [Oryza sativa (japonica cultivar-group)] (GB:BAD09759.1); similar to GTP-binding signal recognition particle SRP54, G-domain [Medicago truncatula] (GB:ABE92836.1); similar to Os08g0480100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062057.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle receptor, alpha subunit, N-terminal; (InterPro:IPR007222) 0.32607898085031 3.86072373770525 0.00270292418007195 1 3.95350075577407 19.8937616618086 0.32607898085031 0.0392905432181525
AT4G16850_at 3.53352430282925 3.66199219570576 4.23902402857199 4.1065425949585 4.0861418775569 3.59829901094701 3.4136680503704 3.22088709292958 4.20721744902549 3.72156793238146 4.40092015534706 4.33127903145939 4.18801987516419 4.06777156002756 4.3838377971287 4.24404345078376 3.71998874233852 4.16998123291248 3.97507118443482 0.207972215903889 0.205535957494134 0.216752726475625 0.210800360309202 0.210020276928915 0.213732321659895 0.205930032316027 0.211844505274846 0.212261732348305 0.211537966785948 0.214008793161630 0.209952531614681 0.206766211892562 0.214288976638209 0.207228074120213 0.210726947627106 0.224549794328121 0.229273462385523 0.211267876381174 4 4 + 9481074 9481546 9481254.909 9480095 9481757 + gene protein_coding_gene FALSE TRUE AT4G16850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31130.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE86436.1); contains domain gb def: Hypothetical protein (PTHR22597:SF11); contains domain FAMILY NOT NAMED (PTHR22597) 0.38513100479057 3.85705529305538 0.00271997930848072 1 3.94799330941099 7.81060110386324 0.38513100479057 0.0962299848341481
AT4G03200_at 9.11822533424649 9.22400997124598 9.0587050778994 8.94629281582983 8.7688042277981 8.56598827628987 9.25421453150376 9.16247883900173 8.17138388581983 8.8714635375349 7.92916453691992 8.17938765286896 8.37141943315915 8.04119170953267 8.42834268257697 8.61452783124025 8.37679755497049 8.34834606594523 8.73849616473493 0.147661779293187 0.148660325248643 0.147022607270739 0.145817648925592 0.144158932521334 0.152685113683457 0.146769170829103 0.150697656206812 0.163994213471426 0.145715208174232 0.148499125877116 0.149121978374721 0.149260535967595 0.154322069785185 0.157158856685118 0.144158932521334 0.162902380013991 0.157354561328276 0.145914404407857 4 4|0 +|/ 1411682 1412486 1412114.556 1408159 1412756 + gene protein_coding_gene FALSE TRUE AT4G03200.1 similar to PREDICTED: similar to sperm protein SSP411 [Tribolium castaneum] (GB:XP_973977.1); similar to cold-induced thioredoxin domain-containing protein [Ammopiptanthus mongolicus] (GB:ABI97349.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Protein of unknown function DUF255; (InterPro:IPR004879); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain N-acylglucosamine 2-epimerase-type; (InterPro:IPR013330) -0.331209291086685 -3.85703574855895 0.0027200704720749 1 3.94796396249435 17.4523040739427 -0.331209291086685 0.0468772642749764
AT1G03310_at 8.89571182920064 8.96120703643863 8.81345558418806 8.7291470714461 9.14899719201607 8.70266505842439 9.88972358005866 9.66917098308287 9.86224408856653 9.97089888029743 9.66324227877957 9.65399835979624 9.45946675899484 9.72704113510924 9.4896641148652 9.42966447676643 9.4333918855798 9.75097853705926 9.62438363807087 0.0942780169348536 0.0880838571626024 0.088639001877809 0.0933704856959536 0.0875290165245698 0.0961791543551914 0.0856453954107782 0.086264033139716 0.0932478570088808 0.0885411977453027 0.0856911811342455 0.0878014840295884 0.0890541487063074 0.0880775288750599 0.0933142585038911 0.0863401917626446 0.0891422572630705 0.0891051920452115 0.088383883176371 1 1 + 816081 816574 816285.455 813471 816749 + gene protein_coding_gene FALSE TRUE AT1G03310.1|AT1G03310.2 ATISA2/BE2/DBE1/ISA2 (DEBRANCHING ENZYME 1); 1,4-alpha-glucan branching enzyme/ alpha-amylase/ isoamylase|ATISA2/BE2/DBE1/ISA2 (DEBRANCHING ENZYME 1); alpha-amylase Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to isoamylase-type starch debranching enzyme ISO2 [Zea mays] (GB:AAO17048.3); similar to isoamylase isoform 2 [Pisum sativum] (GB:AAZ81836.1); similar to isoamylase isoform 2 [Solanum tuberosum] (GB:AAN15318.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) -0.374315861476330 -3.85662204445889 0.00272200090255327 1 3.94734275598639 18.7988130313638 -0.374315861476330 0.0881141208342896
AT1G03440_at 4.04039922717881 4.06762936377184 3.44248158889536 3.53760190510007 3.85973438339755 4.11883280654222 4.20001678694537 4.83733345156322 4.323845840284 4.03853682742105 3.68411576106766 3.84752499768296 4.15544238242651 3.67985738727315 3.80649164623863 3.95811438267854 3.90870787267929 3.24702315384044 3.87775403939853 0.199395671423193 0.194268064878832 0.206376175947626 0.201665124094106 0.196754209610473 0.197095547398585 0.194880514728477 0.195289678730549 0.191300376036149 0.197312829382652 0.191300376036149 0.191300376036149 0.198318143003349 0.19286751863641 0.195090396932064 0.195458280469003 0.198490140412552 0.202957467358069 0.193625460379991 1 1 + 853340 853815 853563.091 852365 854031 + gene protein_coding_gene FALSE TRUE AT1G03440.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G03010.1); similar to putative leucine-rich repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59431.1); similar to Os05g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055516.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.420408953714815 -3.85638922354027 0.00272308791897881 1 3.94699314878269 7.94598132268452 -0.420408953714815 0.120281566432947
AT4G01380_at 0.887773581844559 1.03935799074299 0.728294458953281 0.729758227082663 0.742409507794081 0.718266257131487 1.05268457452093 0.885525358359086 1.75962964522334 1.19145030873632 0.963264507693549 0.772077246456792 0.860657250618825 0.771702066011136 0.929420572157641 1.14714349968853 0.681020630645375 1.20623780838630 1.04237720472643 0.195582828059147 0.200831059163139 0.207122781134193 0.201421984843639 0.200476632697343 0.199905050991038 0.198368463088130 0.19666700001608 0.209987950863121 0.207780297056837 0.201990590823271 0.202677178607864 0.197746179254960 0.198668077575444 0.20222523875838 0.197858861779458 0.196852227419617 0.196419440954808 0.201117598532063 4 4 - 569165 569795 569468.545 569148 570076 - gene protein_coding_gene FALSE TRUE AT4G01380.1 plastocyanin-like domain-containing protein similar to copper ion binding / electron carrier [Arabidopsis thaliana] (TAIR:AT1G45063.1); similar to Mavicyanin (GB:P80728); similar to Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) (GB:1WS7); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.325682601073969 -3.85615755282831 0.00272417001223926 1 3.94664526172474 1.97180516152162 -0.325682601073969 0.0392742882320046
AT1G71100_at 3.96934625936915 4.21997454368397 4.66995230386890 5.31746233752135 3.79076554844538 3.17070169171126 3.35384636566584 2.88898201509934 2.52049808807764 2.78316905018565 3.03776844547974 3.12955375216626 2.92056961601763 2.62595031248926 3.60416114268239 3.22821326626306 2.51645288224075 2.80573491176533 2.38898688088182 0.244275283643467 0.241926696615391 0.253095746568139 0.262416660087091 0.241215094722368 0.237133043570190 0.237133043570190 0.243123837906414 0.247913429066035 0.242158790887979 0.241677503770714 0.237133043570190 0.237133043570190 0.240854478943089 0.239796846733825 0.237133043570190 0.250941029341709 0.254791018600884 0.239325050069897 1 1 + 26818616 26819142 26818770.727 26818294 26819333 + gene protein_coding_gene FALSE TRUE AT1G71100.1 RSW10 (RADIAL SWELLING 10); ribose-5-phosphate isomerase Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis. similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to chloroplast ribose-5-phosphate isomerase [Spinacia oleracea] (GB:AAL77589.1); contains InterPro domain Ribose 5-phosphate isomerase; (InterPro:IPR004788) 0.52425785459425 3.85595764503306 0.00272510410503826 1 3.94634506564876 6.69651315693053 0.52425785459425 0.180065172384861
AT3G06530_at 3.96605182725926 3.40804204878143 3.32188298732021 3.1577525592028 2.97158789938913 2.97938843040068 3.984427645356 3.53800495302961 2.28090546303617 2.76522460845117 2.25102518119418 2.14124948539017 2.27722758255736 1.80300147494402 2.46547072505287 2.51240923728043 2.48408813255717 2.45760747273765 2.5859439203458 0.222869042894658 0.231871815619073 0.222687496469934 0.219470305738647 0.220657040226338 0.226059966709721 0.221721881620376 0.217501941534439 0.234704876654564 0.217501941534439 0.217501941534439 0.217501941534439 0.222464094482864 0.223105051515946 0.222481679933332 0.223131077973848 0.217501941534439 0.232606511115002 0.217501941534439 3 3|0 +|/ 2032865 2033554 2033222.889 2022602 2033797 + gene protein_coding_gene FALSE TRUE AT3G06530.1 BAP28-related Identical to Hypothetical protein At3g06530 [Arabidopsis Thaliana] (GB:Q9C8Z4); similar to protein BAP28 (FLJ10359) [Homo sapiens] (GB:CAI13776.1); similar to OSIGBa0106P14.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67614.1); similar to OSJNBa0065H10.9 [Oryza sativa (japonica cultivar-group)] (GB:CAI64490.1); contains InterPro domain BP28, C-terminal; (InterPro:IPR012954); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.430746701004259 -3.8549759535825 0.00272969599915858 1 3.94487081076383 5.83740958154669 -0.430746701004259 0.126893773820545
AT1G64680_at 9.52599789609139 9.54995366876217 9.53457893588876 9.3477025738807 9.85137850812736 9.574185108205 10.7297668986240 10.7598917318062 10.6963899594161 10.7213003998572 10.4145745487035 10.3734727545693 10.5930286580183 10.6650504971808 10.3904143494779 10.7576327597146 10.5137138163588 10.5489503975553 10.5295290014225 0.0795466736274798 0.0765780432557595 0.083840190209853 0.0797725959895536 0.0769081829151545 0.0861074625061919 0.0773088588220235 0.0773588672514927 0.0783595244699643 0.0749017166431475 0.0767416295168547 0.0745873946162791 0.0745873946162791 0.0746319178538031 0.0793626746426902 0.0745873946162791 0.0809943042685658 0.0745873946162791 0.0752512239137891 1 1|0 +|/ 24040002 24040696 24040250.5 24039684 24041064 + gene protein_coding_gene FALSE TRUE AT1G64680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03055.1); similar to hypothetical protein LOC_Os11g37650 [Oryza sativa (japonica cultivar-group)] (GB:ABA94460.1); similar to Os08g0114100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060847.1) -0.340704832415036 -3.85456808912871 0.00273160615821912 1 3.94425826347709 20.4497708366378 -0.340704832415036 0.0582349746570179
AT1G29900_at 8.07468922193968 8.2453493462437 8.00147679482542 8.1016763210295 7.69899105526618 8.12744417669943 8.59710014172369 8.61834122931183 8.35893235935966 8.21961055711717 8.27715151110067 7.96510942819482 7.61365421248171 7.90040403653285 8.16666781137592 7.82607177759363 7.7367846880429 7.9748612918143 8.21158396208757 0.130194324517845 0.127945145281250 0.133856875338568 0.13174993596921 0.136634831814964 0.130585307854021 0.130841991581907 0.134747665077148 0.139469729166729 0.127191975871469 0.128427580614460 0.129062112633064 0.135039207087216 0.131598599905135 0.130585071697126 0.127191975871469 0.142481676069948 0.131677941794886 0.133954232008934 1 1 + 10471385 10471935 10471606.182 10468038 10472195 + gene protein_coding_gene FALSE TRUE AT1G29900.1 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase carbamoyl phosphate synthetase large chain (CARB) mRNA, similar to MCCA (3-methylcrotonyl-CoA carboxylase 1) [Arabidopsis thaliana] (TAIR:AT1G03090.2); similar to COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ) [Nostoc punctiforme PCC 73102] (GB:ZP_00109569.1); similar to carbamoyl-phosphate synthase large subunit [Nostoc sp. PCC 7120] (GB:NP_487849.1); similar to putative carbamoyl phosphate synthase large subunit [Nicotiana tabacum] (GB:CAC85727.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Carbamoyl-phosphate synthetase large chain, oligomerisation; (InterPro:IPR005480); contains InterPro domain Carbamoyl-phosphate synthetase large chain; (InterPro:IPR005483); contains InterPro domain Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; (InterPro:IPR006275); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain MGS-like; (InterPro:IPR011607); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) -0.366130214697813 -3.85438662691492 0.00273245644919090 1 3.94398572923644 16.2811153962950 -0.366130214697813 0.0817558447147466
AT3G47640_at 3.83494151897955 3.32810726779852 3.39219105370915 3.2791947477605 5.09034500371528 5.12946780926167 4.34061336750819 4.78655301612857 3.62253282037909 5.9307933408919 5.20792989921998 6.28285214579508 6.41046410732586 5.42072103883355 6.01305424349986 5.91284669550795 6.03358908085055 3.91317379923486 5.33955583265204 0.231295188045886 0.229024077915144 0.229307985791044 0.229789128890403 0.226432141520001 0.236642115767655 0.224026591717600 0.237216183918402 0.234465908283986 0.229367590943879 0.231221496239313 0.224026591717600 0.230997927917365 0.230120601553203 0.224026591717600 0.226774375584555 0.232328700926616 0.252918909107978 0.226048560846748 3 0|3 /|+ 17579417 17580043 17579818.6 17578582 17580300 + gene protein_coding_gene FALSE TRUE AT3G47640.1 basic helix-loop-helix (bHLH) family protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G19860.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91241.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.41764036965853 3.85436476855084 0.00273255889107869 1 3.9439529003346 9.45448816023658 0.41764036965853 0.118645586834522
AT3G18740_at 10.2051897881345 10.4568881652590 9.95876861789404 9.76920648326984 9.61487810952122 9.75008740718329 9.91449558212837 10.3771002016671 10.1874453130369 9.9956647193332 9.725038261126 10.1416459781776 9.60803632432508 9.73298454690588 10.0731912852385 9.57055140584668 9.32665562556243 9.46812188609294 9.87549395038057 0.0929465205238642 0.0954605346525848 0.0953413281278155 0.100376083501316 0.095937072259636 0.09762720402275 0.0977552312715077 0.0963076546574897 0.0963716228218214 0.0982821089030933 0.0954292351190195 0.0982228031472203 0.101342456053039 0.0974094260663857 0.0953635482859275 0.0954221483066883 0.104538793951400 0.102101558651913 0.0956815205374313 3 3|0 +|/ 6453485 6453850 6453735.9 6453374 6454024 + gene protein_coding_gene FALSE TRUE AT3G18740.1 60S ribosomal protein L30 (RPL30C) Identical to 60S ribosomal protein L30-3 (RPL30C) [Arabidopsis Thaliana] (GB:Q9LSA3); similar to 60S ribosomal protein L30 (RPL30B) [Arabidopsis thaliana] (TAIR:AT1G77940.1); similar to 60S ribosomal protein L30 (GB:O49884); contains InterPro domain Ribosomal protein L30e; (InterPro:IPR000231); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.38946988829382 -3.85323101093294 0.00273787785091076 1 3.9422500335066 19.8684832069203 -0.38946988829382 0.0996486057538728
AT3G11745_at 4.1245482855383 4.28405527426956 4.46648399238932 4.28967052603499 4.86434128389063 4.29523559809594 3.90570146140965 3.7824282257629 3.06986558195697 3.3488324505373 3.52946978973898 3.40000832024368 3.74940101244227 4.12806638530666 3.43163141557978 4.1031063179446 3.83189680840254 3.19050955206635 3.54196913534219 0.220798419077659 0.212394174446871 0.216719281187149 0.219553117022105 0.218979685939885 0.220694159823486 0.212685339776793 0.216231466873611 0.233176090210732 0.225456082331204 0.224938276717202 0.216140017397204 0.217434891387922 0.217203898058854 0.223404166494145 0.217740821674813 0.225183922498003 0.212394174446871 0.222599734491429 3 3|0 -|/ 3713994 3714492 3714343.6 3713766 3714585 - gene protein_coding_gene FALSE TRUE AT3G11745.1 unknown protein 0.4025191746472 3.85131692433581 0.00274688206619103 1 3.93937475833301 7.74692487567112 0.4025191746472 0.108870923144629
AT4G04510_at 3.5787876783959 3.48036555972606 4.15167696490931 4.21180182884945 2.69425415689820 3.19741120691634 1.89806062662554 2.31961784832594 2.35372525949517 2.37107672099158 2.62741275096006 2.06506693326738 2.31685081428308 2.55260816066895 2.76521174399805 2.23098126052655 2.19636445384687 2.87642345267575 2.39831065809453 0.241219248049231 0.234793821433391 0.241002776158093 0.254983217892451 0.235244955318148 0.235451002998219 0.233939064868085 0.233340147207464 0.233340147207464 0.238176794971954 0.233340147207464 0.237819286443318 0.240496369319369 0.233340147207464 0.237581351848826 0.233340147207464 0.237065877381221 0.233340147207464 0.233340147207464 4 4|0 +|/ 2243972 2244622 2244329.8 2242120 2244654 + gene protein_coding_gene FALSE TRUE AT4G04510.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04570.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04540.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04500.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.412036088938105 3.8496075894172 0.00275494905687093 1 3.93680665134319 5.60561489673356 0.412036088938105 0.115335373068732
AT1G56010_at 6.5194311424281 6.19458177968379 7.42310793378129 7.19206962537054 8.30327266534154 7.6688528680618 5.81869198634872 5.64241726594957 6.35592133921523 6.638066271066 6.21814285209059 4.20268946542481 6.0401952791299 6.56534989893695 4.23735907770159 5.87577102550373 6.90874635174557 5.67451686604797 6.31903069910035 0.233038417064336 0.238074052209654 0.246036002138660 0.245196317579253 0.251688144830619 0.252094540504062 0.259075214541847 0.239435868001921 0.246536492042154 0.234130107273875 0.235467555666771 0.254529730991188 0.241557510727195 0.242201066551265 0.247888044592751 0.235994848623473 0.242477914313896 0.245852140877480 0.243791373071585 1 1 - 20950531 20951146 20950803.455 20950236 20952946 - gene protein_coding_gene FALSE TRUE AT1G56010.1|AT1G56010.2 NAC1 (Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22); transcription factor Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1) Identical to NAC domain-containing protein 21/22 (ANAC021) (ANAC022) (NAC1) [Arabidopsis Thaliana] (GB:Q84TE6;GB:Q9SE10;GB:Q9SGS9); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G12977.1); similar to NAC domain protein NAC1 [Phaseolus vulgaris] (GB:AAK84883.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.440359405907515 3.84910760221248 0.00275731332588519 1 3.93605539815527 12.9218127193039 0.440359405907515 0.133203431938562
AT1G18590_at 9.2081010702055 9.59514746213483 8.6308264451428 9.1287019688238 9.3185758294033 8.89682938582387 9.28893523398178 9.3446891188109 6.38955731330428 8.56846712615548 9.02885980852424 8.9919178668433 8.97060194914476 9.02687798568208 7.67060128446656 8.45309073094094 8.66847660700141 8.88097505850317 7.45312215365563 0.188160827294780 0.190404034381653 0.188208740390635 0.182519909784701 0.186122407675189 0.191967386225165 0.182089826729387 0.191045053743971 0.216664726213156 0.182586601127444 0.18377780991393 0.182089826729387 0.182089826729387 0.18909516069919 0.206666411301023 0.186273932636601 0.195819121130002 0.183857518251011 0.203855458450483 1 1 + 6399067 6399637 6399311.545 6398572 6399934 + gene protein_coding_gene FALSE TRUE AT1G18590.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74090.1); similar to Flavonol 4'-sulfotransferase (F4-ST) (GB:P52837); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.437779074849185 3.84896270838726 0.00275799887263842 1 3.93583768262039 17.2673794938376 0.437779074849185 0.131642570712259
AT2G38400_at 6.80581657866937 6.85251375127093 6.4470317029202 5.9671360976898 7.91328355491722 7.7681910966497 6.54247444583034 6.11432776968445 5.26217773496208 5.79072933044055 5.34960332769333 6.03093312130972 6.94328199701436 6.21092031093658 6.13656423105599 6.50228978238123 6.39577922536931 5.56287049992243 6.24406354265901 0.198919069476344 0.196987823900117 0.198637700840385 0.197917755671587 0.212501357011798 0.204318932763054 0.19578270553714 0.204245533655400 0.201745936400409 0.198878273386310 0.199944625773279 0.200039416875399 0.205677679258892 0.213233238744412 0.200081996972815 0.206023618283166 0.211402739742819 0.209432109793373 0.205109209836827 2 2 + 16092171 16092882 16092449.182 16090767 16093427 + gene protein_coding_gene FALSE TRUE AT2G38400.1 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA, Identical to Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 2) (AGT3) [Arabidopsis Thaliana] (GB:Q94AL9;GB:O80911); similar to alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative [Arabidopsis thaliana] (TAIR:AT3G08860.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III [Medicago truncatula] (GB:ABE94503.1); similar to Os05g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055831.1); similar to Os03g0338000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050053.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) 0.410500459643475 3.84885410202536 0.00275851284578777 1 3.93567449035789 12.7549404653611 0.410500459643475 0.114378766778559
AT1G18440_at 6.28281367226742 6.00378587236498 5.12553780210466 5.36712547468221 5.27148896354204 5.29570006710629 6.53262428557919 6.61053831065755 6.26689209298779 5.87118581319523 6.73108239221795 6.69216323056252 6.1800644993133 6.47844989455708 7.13176140639603 6.48072941979205 4.94684053931838 6.3360597541005 5.78429704803885 0.261604815870093 0.258150864547430 0.277427474364882 0.262021177374824 0.262933948433172 0.292913531816454 0.260978447525495 0.260170426018601 0.270905210828227 0.263390931811353 0.267203747747157 0.254706450010898 0.256812402385325 0.255640686422812 0.254706450010898 0.254706450010898 0.270179888782517 0.254706450010898 0.263553693438112 1 1|0 +|/ 6346295 6347569 6347146.5 6345967 6347903 + gene protein_coding_gene FALSE TRUE AT1G18440.1 peptidyl-tRNA hydrolase family protein similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G16140.2); similar to Putative Putative Pepidyl-tRNA hydrolase family protein [Brassica oleracea] (GB:AAW81735.1); contains InterPro domain Peptidyl-tRNA hydrolase; (InterPro:IPR001328) -0.347229275533442 -3.84883536641794 0.00275860152098324 1 3.9356463380201 11.9843362444245 -0.347229275533442 0.0654132641613419
AT1G76070_at 3.49225689045933 3.89042843589157 4.13845202168661 4.72747856177534 4.75899086967779 4.28547046500759 3.38101823091714 3.74439701812412 3.62964258662923 4.04171685034031 4.26198962235373 3.86035491193976 3.96848458002675 3.76621685871518 3.85552276356536 3.92773149751996 3.66356387079008 4.12468962123469 3.74021149676795 0.27843093200255 0.276914528084443 0.281966543700333 0.274913168453780 0.292393960034755 0.303414837463272 0.275503814906631 0.284896748120190 0.293463071937620 0.274947986343083 0.273506359063817 0.273506359063817 0.286342057277399 0.28606023049901 0.277113501638579 0.273506359063817 0.300146561454416 0.290362543483850 0.277331996551328 1 1 + 28551754 28552218 28551971.727 28551276 28552505 + gene protein_coding_gene FALSE TRUE AT1G76070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20310.1); similar to syringolide-induced protein 14-1-1 [Glycine max] (GB:BAB86891.1) 0.487642536772244 3.84874738836419 0.00275901795861438 1 3.93551414058183 7.91852465853278 0.487642536772244 0.160648291544486
AT1G79190_at 4.56898230423283 4.63331864204897 4.07903682532432 4.00556777556711 4.10331198810247 4.05479001827983 4.31988014546962 4.22847434589903 3.58146851119589 4.10203545408594 3.47778950373049 3.6639298653961 3.69173212233376 3.15530635248535 3.30458549365721 4.06631341811166 4.41311555758325 4.00675490944965 4.25473049032994 0.225106841880147 0.22160638602148 0.228003146534727 0.221278289224848 0.223205641843268 0.226509475299653 0.230048627418204 0.235867351370800 0.224417122013151 0.224997454390544 0.230011832871619 0.224890282884201 0.223905539810511 0.229502742532329 0.232277268964169 0.228877287128259 0.224855172381870 0.229201609408195 0.228167798668303 1 1 + 29798422 29798969 29798612.273 29793532 29799063 + gene protein_coding_gene FALSE TRUE AT1G79190.1 similar to hypothetical protein [Oryza sativa] (GB:AAL67598.1); similar to Os10g0575800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065483.1); contains domain ARM repeat (SSF48371); contains domain SUBFAMILY NOT NAMED (PTHR18460:SF12); contains domain ARMADILLO-LIKE HELICAL (PTHR18460) -0.316978894977334 -3.84704976605422 0.00276706630994897 1 3.93296306544391 8.1000964496392 -0.316978894977334 0.0246238406529085
AT1G54770_at 5.17029354363801 5.05895994494576 5.03490095633957 5.47444049847145 5.80652137277761 5.56838556276084 5.15826394258138 4.72117268526331 4.43229009473873 4.57094475218807 4.84587674850675 4.9844341909025 4.95511258072351 4.82156266766854 4.59251867873797 4.62879266735947 5.15795969808081 4.42446155120143 4.2517547578224 0.259199982021844 0.250485698072452 0.263449468069726 0.260839202072831 0.252103443605421 0.264342236639594 0.253872698328422 0.259040915835026 0.26473087583033 0.264916812826382 0.245185479910974 0.249766933610126 0.258453836863748 0.254590431451735 0.245684247190158 0.252207699033139 0.250922874737091 0.257506709771738 0.256822280045002 1 1|0 +|/ 20438478 20439151 20438760.778 20438306 20439675 + gene protein_coding_gene FALSE TRUE AT1G54770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G30495.1); similar to Os02g0730500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048014.1); similar to hypothetical protein SNOG_09025 [Phaeosphaeria nodorum SN15] (GB:EAT83217.1) 0.413449774064069 3.84591052077216 0.00277248107217095 1 3.93125087299592 9.85895217142092 0.413449774064069 0.116519596897820
AT1G69490_at 10.2377305464196 10.5286627066326 11.5706777106273 11.4593139092314 11.4900883928900 10.9839253272279 10.7221057719845 10.799859511958 10.9080641397828 10.553879351913 10.9465390009783 9.99011872693838 10.9128638926245 10.7791926954107 9.39734231145393 11.2416845397137 11.0826829615812 10.7276532424259 10.4873478238516 0.121586211035415 0.117319334305613 0.119771516300079 0.115074340656624 0.116696076808281 0.123397357405102 0.123791515947409 0.118169757832207 0.125524378241345 0.118248621918114 0.117361617738056 0.118486435648866 0.115074340656624 0.115074340656624 0.124644436350937 0.115074340656624 0.129846023308634 0.123473316663554 0.115074340656624 1 1 + 26126266 26126846 26126603.636 26125802 26127084 + gene protein_coding_gene FALSE TRUE AT1G69490.1 NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. Identical to NAC domain-containing protein 29 (ANAC029) (NAC2) (NAC-LIKE, ACTIVATED BY AP3/PI protein) (NAP) (NAP) [Arabidopsis Thaliana] (GB:O49255;GB:Q8LD99); similar to ANAC025 (Arabidopsis NAC domain containing protein 25), transcription factor [Arabidopsis thaliana] (TAIR:AT1G61110.1); similar to NAC1 protein [Glycine max] (GB:AAX85978.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.394453800143605 3.84552812938448 0.00277430101729745 1 3.93067613232229 21.6163072062414 0.394453800143605 0.103730373132518
AT1G33880_at 1.56443641084777 1.82047193626942 2.13180922786249 1.86057007015411 1.04978663784890 1.39236572251707 1.41680046481012 2.23937608135047 2.12859253340450 2.02173667721160 1.26702932424505 1.22880184130031 1.73697035478560 1.60518001215624 0.94356676824289 1.35738812204722 1.3193986025746 1.62538993403660 2.54504498164461 0.184805467584792 0.182057985597077 0.185619192451466 0.184180681703549 0.189660944959819 0.185785644612823 0.182691723702321 0.183335454582770 0.187361894440835 0.195151695097230 0.187358412672535 0.182175385269314 0.180081595694597 0.192008629881097 0.192931409853952 0.180609818148772 0.183981336265684 0.194508926305026 0.181917818738735 1 1|0 -|/ 12303854 12304758 12304347.2 12303842 12304891 - gene protein_coding_gene FALSE TRUE AT1G33880.1 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT1G33930.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) -0.498982043110236 -3.84528270160955 0.00277546975364658 1 3.93030724027671 3.49308057762945 -0.498982043110236 0.167167217375671
AT1G27390_at 5.94156217527154 5.82183044064657 6.38062403938335 5.9915176137343 5.59845481683364 5.73040325687645 5.03783045933198 5.08063669451714 4.2125449840034 4.75707295873859 4.53784951178167 4.9124213938604 4.81203262394585 4.78031248604687 4.78288058834339 4.52876603643955 4.89757431265115 4.75391925683849 4.50712141598972 0.223604809738376 0.217552657183324 0.222596338026735 0.216512558911166 0.221261163517905 0.229216042346550 0.219881658303112 0.225127942639762 0.240882370579814 0.224638659053601 0.216512558911166 0.227088201331004 0.216512558911166 0.216512558911166 0.221206055889024 0.216512558911166 0.228683247684296 0.239237966119674 0.225090876406681 1 0|1 /|- 9513474 9514448 9513967.5 9513076 9514988 - gene protein_coding_gene FALSE TRUE AT1G27390.1 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins Identical to Mitochondrial import receptor subunit TOM20-2 (Translocase of outer membrane 20 kDa subunit 2) (TOM20-2) [Arabidopsis Thaliana] (GB:P82873;GB:Q9FZJ6); similar to TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3), protein translocase [Arabidopsis thaliana] (TAIR:AT3G27080.1); similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) (GB:P92792); contains InterPro domain Plant specific mitochondrial import receptor subunit TOM20; (InterPro:IPR010547); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.356629031296492 3.84505134759938 0.00277657193777554 1 3.92995949476456 10.3193404266489 0.356629031296492 0.0744300571534173
AT1G53710_at 5.5761587623854 5.71939047355279 5.65039154677981 5.40239841363035 5.18595553025116 5.19479604576659 4.19978557223672 4.24285099838973 4.65754251673604 3.84657975250422 4.49318031952353 4.38069572911355 4.35643749768372 4.38527070471899 4.36516408929439 4.45890944797988 4.43158915114995 4.75539165730053 4.13093330471972 0.238743447655605 0.236277596285333 0.232489751503111 0.231441077661734 0.227296021754802 0.242676312192519 0.228024221980569 0.222776475371133 0.234185386301256 0.228771118036001 0.225138977360317 0.224288067355108 0.233655897771776 0.228918788237429 0.220631837031251 0.223940199821382 0.225289728408081 0.220631837031251 0.224351543163805 1 1 - 20057043 20058489 20057943.2 20056829 20060064 - gene protein_coding_gene FALSE TRUE AT1G53710.1|AT1G53710.2 protein serine/threonine phosphatase| similar to Metallophosphoesterase [Medicago truncatula] (GB:ABE82070.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.332741782870695 3.84465903804848 0.00277844196126888 1 3.92936980301589 9.47897342583185 0.332741782870695 0.0501406896268347
AT2G39220_at 4.98333154278107 5.6550191628292 4.87845834488409 5.08965570943675 3.5860943834927 3.99745125810917 4.34255783002012 4.73794414267314 3.78215476380235 4.3107322852963 3.63179150393142 4.27663531592579 3.46591316796972 3.32538335415153 4.18059728592505 3.64570989620824 3.7352849638099 3.22151552905262 4.21955286550101 0.230025796860710 0.231525372407519 0.227973479089060 0.225010096638890 0.231225645345772 0.229470994250062 0.225977496914157 0.227478620059688 0.248111674431123 0.225135263691612 0.224527128272708 0.227267006501093 0.233896531714578 0.224164984371086 0.230797998064682 0.227219345029457 0.229310431834188 0.236533903566072 0.228416299577569 2 2|0 -|/ 16382179 16382802 16382482.2 16381974 16384098 - gene protein_coding_gene FALSE TRUE AT2G39220.1 PLA IIB/PLP6 (Patatin-like protein 6); nutrient reservoir similar to PLA IIIA/PLP7 (Patatin-like protein 7) [Arabidopsis thaliana] (TAIR:AT3G54950.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) -0.480295503336656 -3.84445163652832 0.00277943111070816 1 3.92905804378468 8.55356430443911 -0.480295503336656 0.156833112791364
AT1G53290_at 6.07999166915675 6.73962897401632 5.39506295105224 5.57781855694707 6.25157242469486 6.36939624574809 6.75627611290586 6.83200090350794 6.59366442922778 6.93422969848135 7.00230681280547 7.19577539864093 6.42175787956074 6.56089734473502 7.13715081124833 6.46377387345228 6.27451103706476 6.72088796428273 7.04839629088582 0.199407865926921 0.198582403578227 0.198894783176753 0.197538368524462 0.201554203845937 0.203076451410044 0.202678281393810 0.203759322989006 0.203208665968438 0.206739546189172 0.209532655066311 0.206002863269026 0.205969423622054 0.204773116132719 0.19654579536231 0.200748222816635 0.210721699847710 0.203363851854441 0.202526284637560 1 1|0 +|/ 19876007 19876885 19876430.7 19874967 19877158 + gene protein_coding_gene FALSE TRUE AT1G53290.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G14960.1); similar to UCW98, putative galactosyltransferease [Hordeum vulgare subsp. vulgare] (GB:ABL11234.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.420071351463675 -3.84432201101211 0.00278004951250017 1 3.92886319208968 13.0406665362980 -0.420071351463675 0.120907843531419
AT3G57460_at 4.42838386549488 4.47683346811301 6.67739973185808 5.39014078197198 2.63926426022052 2.82678448722325 1.66019576570034 1.30842305902961 3.14319919100684 2.26215691452668 2.63024121259510 2.74550565724913 1.90166581336099 2.16982017092485 2.21159460939075 2.12244499505174 2.43794489118345 2.39374324126970 2.05869165388541 0.286448765750646 0.287933452427898 0.308340010086752 0.297818243340391 0.273709043681268 0.272922827599930 0.278872082159447 0.278849422931103 0.272922827599930 0.275369803282386 0.277307585703439 0.273003641221071 0.275402008321385 0.272922827599930 0.283911020640362 0.273904631872531 0.287433332063986 0.277265319710863 0.282058844544193 3 3|0 -|/ 21274090 21275106 21274483.5 21274063 21276774 - gene protein_coding_gene FALSE TRUE AT3G57460.1 similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT3G57470.1); similar to insulin degrading enzyme [Solanum lycopersicum] (GB:CAC67408.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863) 0.626771214902951 3.84414568716458 0.00278089092614792 1 3.92859814046923 6.08324617429372 0.626771214902951 0.233353856995174
AT2G01120_at 2.54100403988915 2.62059945944618 3.18651094310256 2.78631917591839 2.49670914364888 2.60164532971523 2.15868643269335 2.45114912501326 1.98772333341013 2.4840338129435 2.91864811069246 2.92083204860174 2.43114901168792 2.50785950875069 2.79344158153867 2.92651437632846 2.28556333274355 2.66296928544468 2.30284113999003 0.186618179166742 0.188217715333214 0.182130887880184 0.184358887195133 0.189731772721025 0.184854907923542 0.192683846450292 0.187834571421031 0.19647799678705 0.184803922508916 0.182285081820028 0.186767192833659 0.186475527649209 0.182905861015734 0.181339613272928 0.185300238100237 0.191978814293118 0.188086141834760 0.193558373722963 2 0|2 /|+ 87473 87878 87700.375 87317 88122 + gene protein_coding_gene FALSE TRUE AT2G01120.1 ATORC4/ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4); protein binding Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b. similar to Os01g0683400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043888.1); similar to ori (GB:BAC77041.1); contains domain ORIGIN RECOGNITION COMPLEX SUBUNIT 4 (PTHR12087) 0.373804556014040 3.84287184674267 0.00278697751757684 1 3.92668317238465 5.07486374905575 0.373804556014040 0.0887544229405304
AT2G28200_at 3.28956331101558 3.76889411704476 2.88304326897765 3.91938805067737 4.74325720474274 4.37343880110221 4.9828127671511 5.18669286043033 4.70489403285928 4.64869909000899 3.46690940598596 3.37326503813057 4.36510515146429 4.05237947949592 2.96479746324553 5.20065461232554 4.751731820424 4.18666730266827 5.28812551334872 0.245834146431891 0.240105017395308 0.248785681769561 0.249819748522749 0.244084588999291 0.257132764754436 0.241485663747799 0.251841646129360 0.256770668020854 0.253793703288217 0.241200252731126 0.243963384176063 0.240105017395308 0.248278452639521 0.244015775531059 0.242046863002958 0.249613499568498 0.244848968854378 0.242509291692454 2 2 + 12031663 12032215 12031941.182 12031226 12032381 + gene protein_coding_gene FALSE TRUE AT2G28200.1 nucleic acid binding / transcription factor/ zinc ion binding similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G04390.1); similar to ZPT2-11 [Petunia x hybrida] (GB:BAA21920.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.581296513528468 -3.84276474845475 0.00278748987773125 1 3.92652216164592 8.60626712912097 -0.581296513528468 0.210679484985014
AT1G06960_at 5.56005105000296 5.60262624616701 5.31436674328763 5.13407151503943 5.54500172512909 5.50079014455428 5.79562010672019 5.78028508244704 6.36939282719696 6.25821933534386 5.97589441259196 6.1160007521738 5.92168177112008 5.92889068169925 5.82620553610961 5.98754599280238 5.4133747162104 6.21865214305956 6.13332516663615 0.197924265424309 0.183450683446786 0.191551145304366 0.186627500266345 0.186158597856627 0.199767355398759 0.188099974002161 0.194699437870254 0.191136674237504 0.190042811466633 0.188559484374432 0.186533951299677 0.197797514487809 0.190264318167406 0.187119101492292 0.184758257936638 0.186002173492010 0.182558056349716 0.184181960523379 1 1|0 +|/ 2136470 2137490 2137094 2135850 2137731 + gene protein_coding_gene FALSE TRUE AT1G06960.1|AT1G06960.2|AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative similar to U2B'' (U2 small nuclear ribonucleoprotein B), RNA binding [Arabidopsis thaliana] (TAIR:AT2G30260.1); similar to spliceosomal protein (GB:AAA33847.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to U2B'' (U2 small nuclear ribonucleoprotein B), RNA binding [Arabidopsis thaliana] (TAIR:AT2G30260.1); similar to spliceosomal protein (GB:AAA33847.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.320601557501565 -3.84070336185034 0.00279737064695476 1 3.92342280008218 11.6176898402251 -0.320601557501565 0.0330660521116593
AT4G14990_at 8.4504395725501 8.94241789311378 9.06384643013176 9.18751644949832 9.5998023514498 9.38106269043695 8.65795880242906 9.04477737532038 8.38057147072229 8.14860625196181 8.4987814200892 8.3054831742363 8.81811137690221 8.70500336053297 7.93371889543036 8.84681933638554 8.77271988140189 8.598328183239 8.27402452438901 0.168853192718344 0.160031270144253 0.17001220144906 0.166994912060468 0.165694536409592 0.175134490402241 0.167644055115967 0.163444080209105 0.182805442080496 0.164559498174944 0.16340513688964 0.164639868247168 0.160524981706101 0.162885368053132 0.174424829073040 0.162068293737128 0.171068260072010 0.165366739595198 0.166343250488727 4 4 - 8566293 8566808 8566559.818 8565618 8569810 - gene protein_coding_gene FALSE TRUE AT4G14990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52714.1); contains domain SUBFAMILY NOT NAMED (PTHR21551:SF13); contains domain FAMILY NOT NAMED (PTHR21551) 0.41314759534768 3.84042089104469 0.00279872743091389 1 3.92299805331106 17.4547800885587 0.41314759534768 0.116707709776029
AT1G02160_at 7.74324649799268 8.03815959005054 7.72806492654011 7.86981183294939 8.29437687566071 8.27264260533299 7.31368017349015 7.42395483975826 7.52174908976968 7.75411509870275 8.12407453942832 8.12170892361831 7.9797799349011 7.8749622746359 8.132255749054 7.95494413987548 7.56995070815882 7.59008842767611 7.66858896380868 0.149726540597203 0.146434481440049 0.144678305357576 0.150022610037712 0.139191697850389 0.158395306310680 0.143448673039349 0.148053468460065 0.154328178553411 0.143592128682089 0.145089467452323 0.143661601049981 0.143941421195223 0.149398121259695 0.145631973569918 0.139402653252092 0.143652792742741 0.14220685274648 0.142561379004394 1 1|0 +|/ 410848 411359 411150.889 410748 411597 + gene protein_coding_gene FALSE TRUE AT1G02160.1|AT1G02160.2 similar to Os04g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054174.1); contains InterPro domain CHCH; (InterPro:IPR010625) 0.340891660603015 3.83925133814461 0.00280435237759581 1 3.92123930598168 15.6188029866863 0.340891660603015 0.0598726116328621
AT3G51750_at 3.27983738174889 3.62232000034331 4.41756240354868 4.05320012279035 4.08705191918202 3.54113887315671 5.21031760265147 4.43133485813756 4.40095117946349 4.76180807306397 5.76246501821778 5.95657934379686 5.71197512888878 5.72923581051549 5.7394124978691 6.13846782625683 5.75853480717502 4.44196401947534 4.27028940568850 0.230064139194459 0.218614564006143 0.21713741894102 0.216852207075896 0.216852207075896 0.223996863916482 0.218725492197869 0.221098771518869 0.225412469381302 0.216852207075896 0.228688352242441 0.224946572937972 0.219134376109321 0.219988392000116 0.219889767714857 0.225859775969647 0.23033624631923 0.220718715829717 0.217298110987054 3 3|0 -|/ 19207685 19208260 19208019.778 19207482 19208313 - gene protein_coding_gene FALSE TRUE AT3G51750.1|AT3G51750.2 |unknown protein similar to hypothetical protein MtrDRAFT_AC146554g6v1 [Medicago truncatula] (GB:ABE91100.1)| 0.532966144700775 3.83832231951433 0.00280882883278418 1 3.91984214292447 9.14660149149307 0.532966144700775 0.185974544181863
AT1G13990_at 9.9643923064236 9.76825668095942 10.6713084981415 10.3278164891720 10.4663911195906 9.92924572056804 9.65690877772944 9.21908743776038 8.61613461866741 8.6782794824101 8.72839427795003 6.64618581302542 9.24069500082289 9.13102973536863 7.28664221417893 9.24424910156397 9.57892666391654 9.03976019273926 7.94835059143064 0.162329326206323 0.165944062056259 0.169165499785468 0.166816907371961 0.160919534058200 0.160723527493576 0.162485081999964 0.160604041760012 0.171646742112478 0.165012782788930 0.160239249898817 0.168151060308440 0.165005009056879 0.169593131401833 0.183841191220911 0.155904005634288 0.156990171325683 0.161272068982777 0.181779294908196 1 1|0 +|/ 4795063 4796432 4795693.4 4794753 4796594 + gene protein_coding_gene FALSE TRUE AT1G13990.1 similar to Os03g0168200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049088.1) 0.447129816796400 3.83759887083691 0.00281231988538387 1 3.91875406210311 18.5135460150173 0.447129816796400 0.138082944824055
AT1G62660_at 7.31727970762212 7.86331416563912 7.28090811386499 7.59287210550931 7.23193172518339 7.396951007119 8.91720583968022 9.15323225731695 4.44203117110202 7.97587435817224 7.63504587489729 7.58016310839165 8.31779857730164 7.74099031541996 7.79183045702975 7.93631204271455 8.28552287953193 8.05672590867213 6.02068957673218 0.193020103235650 0.193166872335588 0.204659551539835 0.193507814343862 0.190991088910774 0.204220062630611 0.201360023847486 0.194429534128515 0.216970119746025 0.200735806817164 0.190340122989232 0.192687447664150 0.19104046012762 0.200880142769655 0.195190939746704 0.193515423907375 0.198449746466333 0.201293361545190 0.196107922211263 1 1|0 +|/ 23206439 23207145 23206750.4 23203383 23207430 + gene protein_coding_gene FALSE TRUE AT1G62660.1 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar similar to ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE), beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G12240.1); similar to acid invertase [Brassica oleracea] (GB:AAG36943.1); similar to acid invertase [Brassica oleracea] (GB:AAG36942.1); similar to soluble acid invertase [Pyrus pyrifolia var. culta] (GB:BAF35859.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) 0.417379011090312 3.83691981167156 0.00281560082715392 1 3.91773268261125 14.8763353723237 0.417379011090312 0.119697670788066
AT3G23080_at 9.88114219867559 9.96236139642965 9.33726630558636 9.4296545219747 10.2391558710847 9.9585997570245 10.3572421232924 10.2757219862902 10.8024647793097 10.6833553008123 10.7932404762299 10.5500839448675 10.2916728779522 10.4677030042257 10.4765987540927 10.2661443816331 9.9821496923103 10.4082736371493 10.6096817291279 0.0945875714331853 0.0928030806643343 0.0930438629778223 0.0932901101315093 0.0946142872272065 0.0964798249189175 0.0965511043513068 0.093956831050329 0.0951864917835956 0.0910679835450894 0.0887812016517193 0.0904057355728098 0.0921685318923306 0.0927154988681775 0.0936542162701526 0.089973978854114 0.093494450384424 0.0899748289160947 0.093887956843513 3 0|3 /|- 8207621 8208066 8207824.2 8207294 8209336 - gene protein_coding_gene FALSE TRUE AT3G23080.1|AT3G23080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14500.1); similar to putative membrane related protein CP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83004.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14500.1); similar to putative membrane related protein CP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83004.1); similar to Os07g0185200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059064.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.33598253464004 -3.83575815813113 0.00282122267735385 1 3.91598529055379 20.4816349946152 -0.33598253464004 0.0548584393806934
AT2G29490_at 2.94446529267039 3.01430524183467 1.23287568033763 1.48907183558261 1.71035850807740 1.4411321354783 1.49503707489871 1.27793206896905 1.29490588947937 1.49361238923250 1.43609651208068 1.16754277630973 1.20397775451489 1.36259931927572 1.5931829566547 1.12383483191443 1.63851036602959 1.32382249121136 1.27778683267691 0.266691211208775 0.267023730414364 0.245060235480786 0.247517130755596 0.252410507166703 0.249319071011905 0.247272998676519 0.2476551719173 0.245060235480786 0.246208647753704 0.245459496329099 0.247361330426575 0.245742972211441 0.249282123971533 0.245301796570478 0.245060235480786 0.254342857152054 0.250009864188105 0.250126504329000 2 2|0 -|/ 12638836 12639328 12639128.7 12638455 12639550 - gene protein_coding_gene FALSE TRUE AT2G29490.1 ATGSTU1 (GLUTATHIONE S-TRANSFERASE 19); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU2 (GLUTATHIONE S-TRANSFERASE 20), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29480.1); similar to glutathione S-transferase GST 13 [Glycine max] (GB:AAG34803.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.356907270427461 -3.83543474153134 0.00282278993026741 1 3.91549876726297 3.18146268629533 -0.356907270427461 0.075458880657087
AT4G26070_at 8.34204709800327 8.59904216370787 8.1904024062139 8.10996434116578 7.81298570092076 7.36537872381727 6.15699334712686 6.19542792559372 7.94673948116469 5.96270444580308 6.66190716650187 7.93951811974831 6.5317353734966 7.14985995912349 6.33636285820419 6.80770626872232 6.20888704634063 7.68760057957995 6.22274076075982 0.226393363535469 0.230301415212506 0.225407794602192 0.23703060124446 0.234860022657823 0.226852110161893 0.241852422584639 0.229011913288329 0.232077450463782 0.228767586888119 0.229203071944182 0.228975186584985 0.231224927215432 0.231982040581012 0.227886993044551 0.226951753767176 0.239159894701656 0.225407794602192 0.235236020208876 4 4|0 +|/ 13218750 13219659 13219271.125 13217658 13219942 + gene protein_coding_gene FALSE TRUE AT4G26070.1|AT4G26070.2|AT4G26070.3 MEK1 (mitogen-activated protein kinase kinase 1); MAP kinase kinase/ kinase Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding. Identical to Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (NMAPKK) (AtMEK1) (MKK1) [Arabidopsis Thaliana] (GB:Q94A06;GB:O04440;GB:O04661); similar to ATMKK2 (MAP KINASE KINASE 2), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G29810.1); similar to double MYC-tagged mitogen activated protein kinase kinase 1 [synthetic construct] (GB:ABF55661.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (NMAPKK) (AtMEK1) (MKK1) [Arabidopsis Thaliana] (GB:Q94A06;GB:O04440;GB:O04661); similar to ATMKK2 (MAP KINASE KINASE 2), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G29810.1); similar to double MYC-tagged mitogen activated protein kinase kinase 1 [synthetic construct] (GB:ABF55661.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.37551205082182 3.83527072267128 0.00282358509852376 1 3.91525202464384 14.4096179136723 0.37551205082182 0.0906426511848567
AT1G63420_at 5.70425896306999 5.63793013313318 5.8287421924778 6.06018525373534 5.93102515477049 5.98915135286157 6.50896039483022 6.28016348082005 5.30574893116608 5.90672103516527 6.36514850539974 7.29125932195764 6.85158044484092 6.49947316531799 6.72313665955023 6.69839656967657 6.20396758475935 6.48622338559166 6.43097711903532 0.157544405205323 0.163252367066169 0.167013782537463 0.164357294925774 0.154530278432125 0.174683961103779 0.155096669883553 0.157188979566404 0.168713096217564 0.157014383078966 0.162153826978409 0.156664595692517 0.154530278432125 0.169116667313019 0.154805732686834 0.15755464920259 0.154530278432125 0.158821599578932 0.160685105944745 1 1 + 23521615 23522416 23522153.091 23519539 23522575 + gene protein_coding_gene FALSE TRUE AT1G63420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48980.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23850.1); similar to OSIGBa0159I10.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67462.1); similar to Os02g0642700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047557.1); similar to Lipopolysaccharide-modifying protein [Medicago truncatula] (GB:ABD33425.1); contains InterPro domain Lipopolysaccharide-modifying protein; (InterPro:IPR006598); contains InterPro domain Protein of unknown function DUF821, CAP10-like; (InterPro:IPR008539) 0.339098460839572 3.83517391133523 0.0028240545517313 1 3.9151063843863 12.2530757322585 0.339098460839572 0.0583510166889772
AT1G29500_at 6.15710853842352 6.41431447094911 6.49024721830238 6.93474547327546 7.99640971829943 7.67076195223964 8.01964665684845 8.21282599650822 8.2345106146547 8.09634397804177 9.72042644232317 9.53165367064175 9.67114233334853 9.24384808403828 9.41316827738643 9.34472139454856 8.63519005199766 8.93293532328665 9.40268047743123 0.203100403000463 0.193930338473277 0.205089045242205 0.192019890551046 0.181349656900925 0.204835881741853 0.188661680231049 0.182690665861739 0.199579596703929 0.194844556210326 0.181349656900925 0.183671265540536 0.182748969543578 0.191094673543174 0.188730512464238 0.186195072157780 0.183937015872066 0.182444545648407 0.181349656900925 1 1 + 10321317 10321625 10321421.455 10321196 10321850 + gene protein_coding_gene FALSE TRUE AT1G29500.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G29450.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.402928924333691 3.83344083407677 0.0028324722190303 1 3.91249898769679 16.1817478633919 0.402928924333691 0.110416241645408
AT4G29285_at 1.36498374739803 1.39404460113396 1.34777091264962 1.14525870186495 1.00634279600526 1.17844252146143 1.43548068066788 1.47923203477284 1.59651641093591 1.63890920540020 0.701151833797021 1.00409762144482 1.26846673194992 1.50366783201202 1.09926859580475 1.33746763628384 1.23779640161101 1.17972888565452 1.4917966137263 0.266620314770602 0.266013401546179 0.263905681554777 0.265518204932536 0.269366716462871 0.264290122491409 0.263223657245121 0.270059742714153 0.267640424130129 0.262915979399005 0.263919334589937 0.262915979399005 0.26320707693135 0.263167184517378 0.262915979399005 0.272002267527756 0.262915979399005 0.271201833856062 0.271145872961074 4 4|0 +|/ 14431634 14432155 14431988 14431532 14432296 + gene protein_coding_gene FALSE TRUE AT4G29285.1 LCR24 (Low-molecular-weight cysteine-rich 24) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Identical to Low-molecular-weight cysteine-rich protein LCR24 precursor (LCR24) [Arabidopsis Thaliana] (GB:Q8LFM0;GB:P82738); similar to LCR37 (Low-molecular-weight cysteine-rich 37) [Arabidopsis thaliana] (TAIR:AT4G13095.1); similar to Putative low-molecular-weight cysteine-rich protein LCR37 precursor (GB:P82752); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat; (InterPro:IPR010851) -0.329133292016130 -3.83282698189333 0.00283545997419017 1 3.91157536090791 2.66504271733118 -0.329133292016130 0.0468809604567640
AT3G57330_at 8.84506834185893 8.88438601542528 8.89974695444153 8.87354435192336 8.79102954569982 8.41494215574585 8.04511792259396 7.86676777598081 8.0206774965939 7.70505564736582 8.41433464694998 8.49012957038874 7.75674091874578 8.1831813998453 7.95855805248599 8.17422612888486 7.92273525378882 7.8814891321066 7.45083908324795 0.173516927602875 0.17390064376377 0.179198585876722 0.174495793349486 0.174135248017356 0.185202883676158 0.166490342152289 0.166490342152289 0.198184492263031 0.175683304346973 0.176061011331427 0.175809735211986 0.187123003746236 0.18327351111612 0.172565362906963 0.169517282580746 0.183096030230528 0.178626469356134 0.183259093737524 3 3 - 21222656 21223265 21222897.273 21222435 21227353 - gene protein_coding_gene FALSE TRUE AT3G57330.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) Identical to Putative calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11) (ACA11) [Arabidopsis Thaliana] (GB:Q9M2L4); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G41560.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17949.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL73984.1); similar to calmodulin-stimulated calcium-ATPase [Brassica oleracea] (GB:CAA68234.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.353315525075756 3.83269394986521 0.00283610790138474 1 3.91137518916445 16.4891746147764 0.353315525075756 0.0724937854447902
AT3G04080_at 4.29269880472543 4.26048856185233 3.91915050426704 4.00163366148576 4.43665758188679 3.97945554235254 4.0984752266513 3.93116315541273 3.73589731461737 3.0995511140799 4.24467626307502 4.01572699906927 3.95838885344668 4.06740055219813 3.77256160838857 3.84670854455428 4.34852897245646 3.77130677719495 2.77651444127897 0.219470742760279 0.225264332041633 0.225622075424023 0.222630531568032 0.216157306937958 0.230225015174381 0.216157306937958 0.220215615593020 0.225670542439378 0.22201517767864 0.223992519147663 0.217553004480101 0.216157306937958 0.222893392342251 0.222000510643116 0.216157306937958 0.229588030586301 0.232212806966378 0.221001461577042 3 3|0 -|/ 1068080 1069134 1068660.3 1067797 1071274 - gene protein_coding_gene FALSE TRUE AT3G04080.1 ATAPY1 (APYRASE 1); calmodulin binding Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination. similar to ATAPY2 (APYRASE 2) [Arabidopsis thaliana] (TAIR:AT5G18280.1); similar to PsAPY2 [Pisum sativum] (GB:BAB85978.1); similar to apyrase [Vigna unguiculata subsp. unguiculata] (GB:BAD80837.1); similar to apyrase-like protein [Medicago truncatula] (GB:AAO23007.1); contains InterPro domain Nucleoside phosphatase GDA1/CD39; (InterPro:IPR000407) 0.368846291655046 3.8326213655006 0.00283646148537022 1 3.91126597135807 7.7185403521409 0.368846291655046 0.085634611059321
AT2G23180_at 3.30085668887333 3.3934751522426 3.09769125185067 2.92059053407236 3.2126363810561 3.2439442331042 4.30736807171273 4.34706111686129 2.85266832826543 3.50279912164602 3.09944508840026 3.55409137282033 4.04645436563394 3.16570355534292 3.32118204918905 3.57344864479322 3.7566356026666 3.51881973092054 3.92999355702901 0.192610173683959 0.185320815003309 0.194265373771331 0.185320815003309 0.19045178640107 0.204855098885628 0.189816882925038 0.191342332529299 0.185320815003309 0.188643346317168 0.187723667812391 0.188759698612508 0.191174631071839 0.190748832383683 0.188348753349139 0.187667720855031 0.191161868362879 0.195298976233416 0.195444861778409 2 2 + 9883031 9883393 9883216.636 9881987 9883674 + gene protein_coding_gene FALSE TRUE AT2G23180.1 CYP96A1 (cytochrome P450, family 96, subfamily A, polypeptide 1); oxygen binding member of CYP96A similar to CYP96A10 (cytochrome P450, family 96, subfamily A, polypeptide 10), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT4G39490.1); similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A9 (cytochrome P450, family 96, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39480.1); similar to Cytochrome P450 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93894.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.321244554247141 -3.83032488798637 0.00284767206716945 1 3.90781010895515 6.94443270548883 -0.321244554247141 0.0356755299327146
AT4G40045_at 6.96710443561463 7.25497949116748 7.3408964724869 7.34047428344016 8.13941024993945 7.42736687299617 8.33389404721084 7.9862201233959 6.51412601657008 7.50468244998937 8.45230210333906 8.11127554442244 8.0821936443709 8.25065245775503 8.45568779313177 8.64559244124879 7.79377180269449 7.68398650384463 7.55808819724143 0.203255942608734 0.209962708806359 0.214962603977993 0.207095210429889 0.204474059843286 0.21443221298127 0.201380647661937 0.209450819056107 0.234456457445154 0.213417744914602 0.207229644567563 0.209062918490334 0.199700312203693 0.217653433944283 0.200307961618697 0.201560498252916 0.205282951466854 0.220332074021782 0.200919800025356 4 4 - 18559945 18560313 18560143.727 18559778 18560651 - gene protein_coding_gene FALSE TRUE AT4G40045.1 similar to Os12g0206700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066383.1) 0.459310671892859 3.82880078859920 0.00285513752782686 1 3.90551618922198 15.2871590841737 0.459310671892859 0.145895977040118
AT3G54260_at 2.09323258001892 2.07412939768788 2.33208515510048 2.58860371388580 2.27618475761187 2.03725069541900 2.65985585222393 3.11670311788235 2.99184697320922 3.76581301170318 4.77221501027137 4.46069807579841 4.04273806295653 5.02743428505603 4.72695821732557 3.99031954309766 4.72695891772777 4.49340200965362 3.97778872278389 0.243264460652369 0.252907761884045 0.248920817271231 0.252446929638276 0.245713160294925 0.253118836391085 0.242816251847184 0.242816251847184 0.243469433868823 0.242816251847184 0.255409056943624 0.253850008124462 0.243218707099507 0.265790791663956 0.255807497287174 0.246412569117518 0.257577020139358 0.254277818747729 0.244549340096594 3 3 - 20096086 20096817 20096347.545 20095988 20097741 - gene protein_coding_gene FALSE TRUE AT3G54260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42570.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.387079228110727 3.82876387323678 0.00285531860097385 1 3.90546062427346 6.45154236762943 0.387079228110727 0.099707966121542
AT3G16460_at 5.09033031543563 4.76744835641871 2.78714654161082 3.17690917396429 4.09887928619219 3.98533783405994 2.69215402032191 2.07006197692507 2.96332736717822 3.39149361475875 2.41478742248624 2.18118305741096 2.49191875640791 2.46943232238792 2.63891977367008 1.70216032141297 2.67936219097379 2.76210488200571 3.16557894092162 0.28574498790868 0.301789272827672 0.258766825395026 0.257566415328365 0.269291227027903 0.266898822827803 0.262977686601114 0.260219326405538 0.260442419920273 0.263912491695333 0.256613761904032 0.263826987379912 0.260432452771092 0.256258331557948 0.25922271191452 0.267956562457757 0.268266751242093 0.256258331557948 0.259202030339905 3 3 + 5594842 5595503 5595183.818 5592588 5595723 + gene protein_coding_gene FALSE TRUE AT3G16460.1|AT3G16460.2 jacalin lectin family protein similar to MBP1 (MYROSINASE-BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52040.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.449456754213467 -3.82759510118264 0.00286105769218715 1 3.90370130011226 6.37900855401473 -0.449456754213467 0.140169774010730
AT1G01920_at 2.00060947898741 2.09053238811814 1.38746672633618 1.54259834080539 1.77534005704691 1.80964522751586 2.22391952004312 2.08783868844147 1.93907705706064 2.28836656924135 2.11786623877055 2.09890917445182 2.06387270037474 1.62980378170992 2.13714118585384 2.07387559413319 2.17912593470629 1.95437332410639 2.39176318591229 0.234991525109751 0.238146143833031 0.236087709505556 0.252558366623032 0.23190925448994 0.23783186957516 0.235477913824368 0.231711805733767 0.246886104953335 0.242406221175842 0.232663415873794 0.234609610457579 0.236328417495271 0.235531123046570 0.237662120227064 0.234414280612319 0.232812348198086 0.248442610714501 0.237608569132089 1 1 + 318304 319460 318847.8 316128 319650 + gene protein_coding_gene FALSE TRUE AT1G01920.1|AT1G01920.2 SET domain-containing protein similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to Nuclear protein SET [Medicago truncatula] (GB:ABD28449.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.323246854973099 -3.82630891347595 0.00286738716007101 1 3.90176503101543 3.98388043466253 -0.323246854973099 0.0394043549872641
AT1G17100_at 9.24385338608407 9.59687339246496 9.12217843559588 9.1037893698893 7.93393937958483 7.95048856140946 9.66587383234103 10.3589782917045 6.93042308496619 9.37886223798147 8.09652369984136 8.53272637343797 9.0823758754106 8.68407255833698 8.48177089550998 9.30771190996412 8.86510494952514 8.30234629716735 8.77243284272242 0.198910328444936 0.196189385702403 0.196850571241271 0.199508401538463 0.193491390604019 0.229931393362865 0.201748866393302 0.200256322760195 0.248934992811285 0.198441701660195 0.207772846741148 0.195098545998006 0.193579647670293 0.216126568073437 0.193151574310917 0.198209479505313 0.215450730442384 0.212154124770122 0.193250701574918 1 1 + 5844889 5845500 5845209.818 5844669 5845654 + gene protein_coding_gene FALSE TRUE AT1G17100.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT1G78450.1); similar to Os01g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042368.1); similar to Os01g0235300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042521.1); similar to novel protein (zgc:56136) [Danio rerio] (GB:CAI11708.1); contains InterPro domain SOUL heme-binding protein; (InterPro:IPR006917) -0.440144720509804 -3.82611044455365 0.00286836513903928 1 3.90146623056034 17.6368227270289 -0.440144720509804 0.134674887470077
AT1G19610_at 4.24816266408063 3.99636760309689 3.20935532310196 2.88484985495206 3.48205751259761 3.32835746256848 2.57365619855949 2.61839230593427 3.470243515253 3.42525281630668 2.54636660632157 2.49510019247084 2.09804729428797 2.277951722719 2.66293563904328 2.43617613181456 2.80953039921289 2.95493362108023 2.45262404245888 0.260205624417866 0.269173394640096 0.258789446308442 0.252694353543200 0.25804407467843 0.254602933310207 0.247093554639694 0.248773233494525 0.247890920401178 0.275361849615347 0.257683400144401 0.253742080100788 0.246617276605533 0.259525836218060 0.258538081533982 0.246617276605533 0.250046599399329 0.249962800426676 0.253664838013646 1 1 - 6781665 6781803 6781737.909 6781474 6782030 - gene protein_coding_gene FALSE TRUE AT1G19610.1 LCR78/PDF1.4 (Low-molecular-weight cysteine-rich 78) Identical to Low-molecular-weight cysteine-rich protein LCR78 precursor (Putative defensin AMP1 protein) (LCR78) [Arabidopsis Thaliana] (GB:P82787;GB:Q8VZQ7;GB:Q9FWR6); similar to LCR67/PDF1.1 (Low-molecular-weight cysteine-rich 67) [Arabidopsis thaliana] (TAIR:AT1G75830.1); similar to defensin [Helianthus annuus] (GB:AAM27914.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Knottin; (InterPro:IPR003614) -0.356949789208425 -3.82569583694542 0.00287040928270931 1 3.90084201108735 6.11823502838225 -0.356949789208425 0.0762873905453054
AT4G32190_at 9.06206403421794 9.26910959722023 9.36395366007468 9.45212183003586 9.2488798395312 9.371207802285 10.1591022851048 10.2364353485348 10.0373388573128 10.4336573826743 9.97943854535107 9.85258258910424 9.8740969562446 9.8812934180993 9.4760496076800 10.2471975575445 9.99321654858331 9.92945551792218 10.2413800018879 0.0881242887506141 0.0855592759228646 0.0822171291636492 0.0866197091514118 0.0842673456166993 0.087119368327264 0.0819809592861736 0.0845164726401882 0.0885470081538138 0.0818203476218238 0.0818203476218238 0.0861415898839132 0.0857846475693736 0.0900738817624673 0.0904579842791091 0.0828156613284474 0.0868144221703007 0.0841131324718438 0.082733893176858 4 4 + 15547098 15547648 15547398.273 15544884 15547861 + gene protein_coding_gene FALSE TRUE AT4G32190.1 centromeric protein-related similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to Os02g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046120.1); similar to hypothetical protein AYWB_353 [Aster yellows witches'-broom phytoplasma AYWB] (GB:YP_456549.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.327964719006647 -3.82436710614679 0.00287697051753203 1 3.89884137006493 19.5911718445545 -0.327964719006647 0.0463017526336631
AT1G44835_at 6.20687788480376 6.04504173644517 5.11910258283212 4.95070054866195 5.41075765875464 5.25369648510082 6.19807133042505 5.87694946556233 4.96779430283428 5.28365328729812 5.3619363502081 5.7532409487807 5.06358616177435 5.4741983827797 6.26513040293717 4.98272040661872 5.44111051512872 5.18736248100393 5.50137020888204 0.249003754817184 0.235488062959858 0.242563875737377 0.244580930222771 0.240329551353506 0.253601479803366 0.245569283796880 0.241066699331121 0.256802423870987 0.236090989521046 0.243492969945672 0.242059719395253 0.24192671060829 0.243874153668166 0.250278401167082 0.235488062959858 0.247439417202240 0.249897512386717 0.239776748963323 1 1|0 +|/ 16944112 16944753 16944386.25 16942241 16944964 + gene protein_coding_gene FALSE TRUE AT1G44835.1|AT1G44835.2 YbaK/prolyl-tRNA synthetase family protein similar to 25.7 kDa protein [Cicer arietinum] (GB:CAB81546.1); similar to Os02g0767700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048233.1); contains InterPro domain YbaK/prolyl-tRNA synthetase associated region; (InterPro:IPR007214) -0.35397467282796 -3.82290764167761 0.00288419523170907 1 3.89664362645437 10.9786996978193 -0.35397467282796 0.073896093937354
AT2G21520_at 9.2575346315206 9.32354097884781 9.35462039410904 9.49906214478932 9.55305201436016 9.27823532585345 8.67270716879153 8.51467480970281 8.62193395640314 8.79034034392664 9.10954959513494 9.05589636140077 8.72371266625712 8.93078370253164 8.91699003401831 8.82288697348807 8.84361184288405 8.71307583560045 8.64866513045936 0.125911978168182 0.127703332081468 0.131215716680420 0.125314515896726 0.129525079867716 0.131596061264597 0.126043412672907 0.129758381588875 0.135277037270376 0.132556554411428 0.126191013356726 0.126554461996555 0.127173796917133 0.135052538529646 0.129476550468543 0.127995847116567 0.136649415980019 0.134206670000328 0.127250446677010 2 2 + 9225242 9225947 9225632.455 9223449 9226288 + gene protein_coding_gene FALSE TRUE AT2G21520.1 transporter similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.340855819356838 3.8228135471391 0.00288466166808884 1 3.89650192428608 17.9699500268356 0.340855819356838 0.0613597020208588
AT1G74380_at 6.41782028743521 6.56320821460313 5.51366617521508 5.76856578058594 5.63834589719987 5.68061734037771 6.74640516007502 7.16811441136176 6.56036944961224 6.37338762240466 7.19806572596118 7.18311401347795 6.73439866267681 7.24005406194693 6.88545812018044 6.47882800218926 6.06039624451255 6.21278169666937 6.32701270501263 0.140360915924624 0.142908645464611 0.146790228156232 0.133636364998202 0.138372775196667 0.142530562261448 0.147880255200766 0.135219441407941 0.157861395061189 0.141825624047013 0.137945061227936 0.140006175926426 0.132671323744826 0.141139615322344 0.147754629820525 0.140974695603639 0.151653186624235 0.148575172002296 0.140110408963649 1 1 + 27964354 27964841 27964591.909 27963239 27965115 + gene protein_coding_gene FALSE TRUE AT1G74380.1 galactosyl transferase GMA12/MNN10 family protein Identical to Putative glycosyltransferase 5 (EC 2.4.-.-) (AtGT5) (GT5) [Arabidopsis Thaliana] (GB:Q9CA75); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT1G18690.1); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT5G07720.1); similar to putative glycosyltransferase [Nicotiana benthamiana] (GB:CAI11458.1); similar to putative glycosyltransferase [Solanum tuberosum] (GB:CAI11457.1); similar to putative glycosyltransferase [Lotus japonicus] (GB:CAI11456.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.372353873207749 -3.82195485140474 0.00288892192642231 1 3.8952087147407 12.7717897375042 -0.372353873207749 0.0892091379922355
AT3G59920_at 10.2465990429371 10.2914276185857 10.5942985678615 10.5698535468061 10.2625067012920 10.3372298420067 9.92452762907539 9.76545617291285 9.94819032407171 10.1246353556312 10.2919722311122 10.2523305130302 10.3461691336279 10.2162625115083 10.2829985778890 10.1923600278127 10.3840017299172 10.3261727061138 10.0297288886688 0.0818833819835731 0.0811446227816005 0.0849540649287982 0.0854965528020708 0.0803467494955273 0.0817582154456687 0.080420432428599 0.0814848075608052 0.0915016222265715 0.081119384433106 0.0814832057812919 0.0837267803905609 0.0789811591355783 0.0803884022228779 0.0826184340422472 0.0817395478900517 0.0819644028648977 0.0820400221530945 0.0828838603506625 3 3|0 +|/ 22147901 22149168 22148560 22145976 22149434 + gene protein_coding_gene FALSE TRUE AT3G59920.1 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor RAB GDP DISSOCIATION INHIBITOR 2 similar to RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT5G09550.1); similar to ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1) [Arabidopsis thaliana] (TAIR:AT2G44100.1); similar to GDP dissociation inhibitor [Medicago truncatula] (GB:CAF02075.1); similar to Rab GDI protein [Medicago truncatula] (GB:ABE89690.1); similar to GDP dissociation inhibitor [Cicer arietinum] (GB:CAA06731.1); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005); contains InterPro domain Rab GDI protein; (InterPro:IPR000806) 0.318159060683161 3.82055179250462 0.00289589698069656 1 3.89309548334124 20.4093465326848 0.318159060683161 0.0316715737421795
AT2G31380_at 9.02258370844406 9.03970797897675 8.93048272489719 9.16282087269514 9.65362490486745 9.37743578308358 10.4197605056313 10.3397590141747 9.77907528399601 10.0112602390166 9.45209824734523 9.51681383161126 9.74841382500204 9.51760312119055 9.3715663559582 10.2020638685329 9.95269298233969 9.58396816677875 10.0003238190170 0.114391646853937 0.119673838955050 0.123918303325436 0.123096018248574 0.118660672004038 0.123387207555464 0.120021592071025 0.122052992777207 0.130954117579216 0.113566416372696 0.124787450778142 0.117316156305439 0.118644156964288 0.118917024356513 0.116781185097634 0.113566416372696 0.122864437038238 0.114279012305583 0.117499479158630 2 2|0 +|/ 13389367 13390267 13389977.6 13388987 13390547 + gene protein_coding_gene FALSE TRUE AT2G31380.1 STH (salt tolerance homologue); transcription factor/ zinc ion binding a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. Identical to Salt tolerance-like protein (STH) [Arabidopsis Thaliana] (GB:Q9SID1;GB:Q9C558); similar to STO (SALT TOLERANCE), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G06040.1); similar to salt-tolerance protein [Glycine max] (GB:ABB29467.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.343214480626289 -3.81966522483673 0.00290031338999880 1 3.89176004120876 19.2924581018570 -0.343214480626289 0.064043068998092
AT4G04490_at 4.84420761225269 5.38564871833439 6.50335999773533 6.20424344420003 5.3371164664135 4.5442423884696 1.82372939943319 1.87657661676326 3.97539781007804 2.9361703839223 2.29904920455052 2.64997176299536 1.97600640563192 2.56273739823422 1.74965286904951 1.71805294837404 2.25888151127863 2.96575530467071 3.34929516468425 0.274127997756348 0.285891357673844 0.279616702911026 0.279586305024675 0.263679749893546 0.271268632412503 0.265264483251867 0.263679749893546 0.265787601271221 0.263679749893546 0.266840414157358 0.263679749893546 0.266845317266165 0.266378731577843 0.265379402503874 0.273597935615436 0.263679749893546 0.265946570490475 0.263679749893546 4 4|0 -|/ 2231955 2232723 2232120.5 2231955 2234636 - gene protein_coding_gene FALSE TRUE AT4G04490.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04570.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04540.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G04500.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.508462813439326 3.81859171220238 0.00290567040611357 1 3.89014286890024 7.4112911863634 0.508462813439326 0.174267963951773
AT3G17330_at 6.12687111020083 6.14266356649151 5.83305302746058 6.11629702946098 5.75113088955383 5.87597832011198 6.94224234203408 6.86978734272378 6.16544903107039 6.71977974719025 6.54837295554 6.8498072120068 6.8378687750547 6.56241374011637 5.99706960914494 6.50419330956897 6.82422428301771 6.00640587573993 6.79276356101516 0.199752511334676 0.203377854460421 0.215238506852021 0.203646259621397 0.208067371811941 0.20635253867892 0.197044931461101 0.197044931461101 0.205261304021051 0.197044931461101 0.200709739675999 0.197516416554934 0.202382675441861 0.200729553469024 0.209229231576327 0.202134479344572 0.197044931461101 0.205818946087322 0.197277028806688 3 3 - 5917301 5917741 5917520.909 5916946 5920194 - gene protein_coding_gene FALSE TRUE AT3G17330.1|AT3G17330.2 ECT6 (evolutionarily conserved C-terminal region 6) similar to ECT7 (evolutionarily conserved C-terminal region 7) [Arabidopsis thaliana] (TAIR:AT1G48110.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE91083.1); similar to Os03g0317000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049941.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275)|similar to ECT7 (evolutionarily conserved C-terminal region 7) [Arabidopsis thaliana] (TAIR:AT1G48110.1); similar to putative RNA-binding protein [Oryza sativa] (GB:AAL58954.1); similar to Os03g0748000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051264.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) -0.334656291725315 -3.81836102055403 0.00290682293602549 1 3.88979532880523 12.7450655783958 -0.334656291725315 0.0550828330588154
AT1G53030_at 7.4400633002614 7.79925752020967 7.51119117932902 7.72559790172412 7.92678316578171 8.06462052097524 5.65272656604115 6.29606293652422 5.45328660012434 5.4365250362047 5.03027437398876 5.6518484035239 5.46725902050677 5.7505723155475 4.35503386403874 5.69738348765242 6.09748078004747 4.86305642841085 5.5960094938047 0.270340585449150 0.270261060773922 0.265181670005441 0.272936668255774 0.268838619187532 0.273203693950296 0.268633034456126 0.270187117709561 0.275620050276613 0.265577965807628 0.278813655965785 0.265917448374001 0.267458196112839 0.272012999211127 0.277150513271847 0.27061325195175 0.272443797915357 0.267004420523355 0.265071763792337 1 1 - 19763898 19764084 19763987.364 19763669 19765110 - gene protein_coding_gene FALSE TRUE AT1G53030.1 cytochrome c oxidase copper chaperone family protein similar to ATCOX17 (Arabidopsis thaliana cytochrome c oxidase 17) [Arabidopsis thaliana] (TAIR:AT3G15352.1); similar to hypothetical protein DDBDRAFT_0188134 [Dictyostelium discoideum AX4] (GB:XP_636547.1); similar to Os09g0420700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063198.1); similar to Os02g0794600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048378.1); contains InterPro domain Cytochrome C oxidase copper chaperone; (InterPro:IPR007745) 0.439430242681694 3.81634128788969 0.00291693372839753 1 3.88675228538460 12.7317315334854 0.439430242681694 0.134924003027936
AT3G45820_at 1.29295584492302 1.18853886444308 1.00311543209106 1.09854307981534 0.563010110454588 0.862476260130485 0.80020302929415 0.921657878302134 1.55798121352114 0.938211988060737 0.801610006404095 0.979606441581894 0.479042736876409 0.929051017197859 1.26729693912443 0.915626035178611 0.897972528426447 0.794015825095363 1.68464634762058 0.183246455557068 0.183246455557068 0.183588996701931 0.188049248559706 0.186673210086408 0.185250306833193 0.190519378596031 0.184989371800769 0.185316978370463 0.200003494776150 0.183246455557068 0.188738698256155 0.191934317011622 0.190894119176303 0.183246455557068 0.186372049031307 0.184379795037709 0.183246455557068 0.19293900109513 3 3|0 -|/ 16851024 16851824 16851254.444 16851015 16851968 - gene protein_coding_gene FALSE TRUE AT3G45820.1 unknown protein -0.339819087724789 -3.81456339149129 0.00292586405126564 1 3.8840731775849 2.10463299958330 -0.339819087724789 0.0610470034176182
AT3G56580_at 4.48832658913604 4.72885394105715 4.76094515007526 4.16532832075845 4.97397999796605 4.81882798609407 4.36126490672460 4.39362322520729 4.46114945022082 4.18805684320483 5.00428846991324 5.15626808356535 4.67698551858206 4.81078044453413 4.92545627701137 4.52096371410471 4.8385395436713 4.82849619518566 4.00467577703311 0.251297901899212 0.242810812974566 0.240013789908332 0.245121239344242 0.240022444091287 0.241949213628759 0.240964976106748 0.245186865943625 0.249499848298016 0.245790994159147 0.253924888485913 0.240728768175075 0.251677256637447 0.246334209169708 0.250530465918906 0.242826274701922 0.253891994671008 0.245357389265825 0.243445004433023 3 3 + 20973929 20974396 20974153.182 20972530 20974728 + gene protein_coding_gene FALSE TRUE AT3G56580.1|AT3G56580.2|AT3G56580.3 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to RHC1A (RING-H2 finger C1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G40830.3); similar to Os03g0351800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050120.1); similar to putative ring finger protein 126 isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68141.1); similar to Os01g0802000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044543.1); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.407007394430119 3.81446029252158 0.00292638278289056 1 3.88391780569763 9.11798525011431 0.407007394430119 0.114495249315010
AT1G33080_at 2.86482862117243 4.08426317057206 3.56728544805963 3.52932548763229 3.25851565655732 2.92438339670991 3.97641965497994 4.00252510392391 4.32327399731873 4.28457950398439 3.28107606319101 3.41183615877429 3.65647599572096 3.49387243882437 3.68769988502403 3.64986594520963 3.32127354102734 3.64178791949284 4.26837219099955 0.248017495331824 0.238368442806119 0.239386932612803 0.241862237577715 0.241485827695774 0.244867433679534 0.242825737716563 0.244914467283531 0.241787418684131 0.253460737029181 0.244882339161180 0.238145559239131 0.238145559239131 0.248271831051731 0.24498238055807 0.240179921733068 0.243707298747989 0.244985221833266 0.242438413761080 1 0|1 /|+ 11989080 11990262 11989644.556 11985687 11990462 + gene protein_coding_gene FALSE TRUE AT1G33080.1|AT1G33080.2 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33090.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33100.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33110.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE91543.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.593110438890897 -3.81349666871046 0.00293123576589889 1 3.88246554320971 7.43097392953875 -0.593110438890897 0.218952617856372
AT1G69040_at 8.70852072363549 8.87337143981776 6.61818422135171 6.24491886142494 8.25406456962294 7.68477887593343 7.57246807904955 7.10748082856412 8.40694833102629 7.6812981535279 8.24211057281969 9.04074560817346 8.20240190911664 8.07752775284041 8.99320178437018 7.87394888328397 6.27064142830474 7.93194722713875 8.29459471397233 0.193564414518389 0.192260568854981 0.194979753012134 0.209572971092678 0.190397177647207 0.205987181196777 0.197441097443909 0.194745964085008 0.206651644338374 0.203039929591877 0.192459786797084 0.190397177647207 0.190397177647207 0.190397177647207 0.191523791797560 0.190397177647207 0.218371668849408 0.196796734292079 0.197959192205523 1 1|0 +|/ 25962985 25963706 25963455.1 25961482 25963970 + gene protein_coding_gene FALSE TRUE AT1G69040.1|AT1G69040.2 ACR4 (ACT REPEAT 4); amino acid binding ACT-domain containing protein involved in feedback regulation of amino acid metabolism similar to ACR5 (ACT Domain Repeat 5) [Arabidopsis thaliana] (TAIR:AT2G03730.2); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os03g0413100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050359.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.456760861384832 -3.81331590753754 0.00293214704036568 1 3.88219310774641 15.7363131392241 -0.456760861384832 0.145489694961507
AT3G51880_at 9.26711080795976 9.30282963899727 9.54391431944098 9.48325427900285 9.7062327661607 9.72350751016606 9.37025334859466 9.36595423182505 9.17806273461148 8.99022498372646 9.53884593553703 9.59111754231596 9.53873792989707 9.3911914461546 9.05825388360197 9.56765635795097 9.57792545812189 9.0655971690435 9.08123301355407 0.0850397675497339 0.0819670572632164 0.0842431847606247 0.0831344066069673 0.0885197976294722 0.0837948385688268 0.0845645634895438 0.0858198460753018 0.081891908772347 0.0846232145465628 0.0871426519851991 0.085785551054639 0.083845059752278 0.0846243383000772 0.0868516638473938 0.0838370231082015 0.0854086072879647 0.0880572049946448 0.0848159555671493 3 3|0 -|/ 19258274 19259402 19258958.222 19257968 19260101 - gene protein_coding_gene FALSE TRUE AT3G51880.1|AT3G51880.2|AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); transcription factor|HMGB1 (HIGH MOBILITY GROUP B 1) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.|Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to HMG-protein [Plantago major] (GB:CAJ38371.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.3103411749395 3.81306907594087 0.00293339187103109 1 3.88182108709849 18.7200517590810 0.3103411749395 0.0125656927632309
AT2G27260_at 7.4933620276944 7.70963840321 7.61138579422405 7.8866472545179 7.96378159397913 7.94311710680871 7.35398123620106 7.59602359556088 6.3923866177026 6.13993334594865 6.61003646336718 6.6230441854552 6.79631337166409 6.90531130540646 5.94367897843694 6.70424370910291 6.80806902850277 6.54241147190155 6.14044483712523 0.216778182496495 0.213968489250854 0.218818836235 0.217776965414632 0.215093654469787 0.222387825831817 0.217046895013647 0.216289847966537 0.227370320810538 0.221761560497069 0.213547685672207 0.215981246421720 0.217995049071943 0.213722942665765 0.224409842694909 0.213547685672207 0.232628169436907 0.220382451783773 0.218928363602228 2 2 + 11677096 11677505 11677259.273 11676733 11677722 + gene protein_coding_gene FALSE TRUE AT2G27260.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G52460.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32758.1); similar to Os11g0157300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065800.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.352682626176669 3.81086691140397 0.00294452218274779 1 3.87850167846651 14.1151888754354 0.352682626176669 0.0737375072251497
AT3G22620_at 1.27777967779401 1.57211882769481 0.902505922708954 1.34480088354477 1.02981641819020 1.04249232564977 1.21263693307788 1.38340528296811 1.75669460738042 2.62629371939733 1.34740918374580 0.874062165044455 1.50751489079518 1.29659726766929 1.81702146127998 1.34008298838699 1.09269710492747 1.74780963313268 1.19130886632229 0.199331981726299 0.201224517676849 0.201627183803337 0.205125186227877 0.195364728192786 0.200377499038563 0.201393748163954 0.206058018120615 0.208368608046718 0.216608604698831 0.211135352480696 0.198573948043606 0.20187655470886 0.203541464699102 0.202922210027889 0.209066472828421 0.206948448067728 0.2004241898468 0.201078440765004 3 3|0 +|/ 8008662 8009279 8008828.889 8008541 8009597 + gene protein_coding_gene FALSE TRUE AT3G22620.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP)-related [Arabidopsis thaliana] (TAIR:AT1G05450.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37995.1); similar to Os07g0175500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059014.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.380890510177114 -3.80960056272026 0.00295094244927127 1 3.87659258386979 2.83869373457327 -0.380890510177114 0.0965984367896888
AT1G19800_at 7.67110205414134 7.9344319524234 7.9870022550235 7.7825412011022 7.78735844216265 7.72354412831479 8.82834268022059 8.70586545725044 8.02348008209417 8.45883892180944 8.22406275583348 7.97452157182101 8.02402229697667 8.06083176875568 8.27949623639444 8.12625457856174 7.3836632043015 7.99641228641014 8.19315130411858 0.13564685900895 0.127818657846402 0.127153884545837 0.130670480510476 0.129739435842895 0.134483197028750 0.132051397219354 0.135792503164839 0.139730564009729 0.128139548813812 0.130069504671659 0.129367285052459 0.137622000285967 0.140718064417166 0.129115880407017 0.132254928643745 0.164927355144980 0.129978952970959 0.129425849528577 1 1 + 6847401 6847870 6847619.091 6846360 6848094 + gene protein_coding_gene FALSE TRUE AT1G19800.1|AT1G19800.2|AT1G19800.3 TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1) Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. similar to Protein of unknown function DUF140 [Medicago truncatula] (GB:ABE94318.1); contains InterPro domain Protein of unknown function DUF140; (InterPro:IPR003453) -0.340661355658529 -3.80878071096365 0.00295510675371954 1 3.87535650141985 16.1694309496911 -0.340661355658529 0.0624484952161688
AT4G22200_at 8.77703435517038 8.66415562005081 9.04874936789373 8.78310438764117 8.83314427632132 8.74121862647731 10.0568941395193 9.74208031046138 9.0520776878838 9.73181706714074 8.87202287683836 9.12438274142581 9.33394665287514 9.1127561827192 8.87202042943782 9.35645497080815 9.3741426626278 9.09439604701353 9.39570248230497 0.096901380731004 0.0900197048227778 0.0945050294075135 0.0966461243593932 0.0916158722351933 0.102881304756060 0.0901303408541007 0.0935827573685803 0.0959259539410496 0.0902527168156187 0.095138464008978 0.0894331480189126 0.0931345970638865 0.096129226764165 0.0929479172889737 0.0905471032282854 0.0998512660689927 0.096629277742756 0.0908817223853755 4 4 - 11746948 11747329 11747196.091 11746525 11750710 - gene protein_coding_gene FALSE TRUE AT4G22200.1 AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding / inward rectifier potassium channel Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. Identical to Potassium channel AKT2/3 (AKT2) [Arabidopsis Thaliana] (GB:Q38898;GB:Q42408;GB:Q9M0L6); similar to AKT1 (ARABIDOPSIS K TRANSPORTER 1), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT2G26650.1); similar to pulvinus inward-rectifying channel for potassium SPICK1 [Samanea saman] (GB:AAD16278.1); similar to potassium channel 2 [Populus tremula x Populus tremuloides] (GB:CAC05489.1); similar to potassium channel [Vicia faba] (GB:CAA71598.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) -0.35458535017935 -3.80870253297688 0.00295550416406385 1 3.8752386288035 18.3486548352310 -0.35458535017935 0.0756046764886644
AT3G51580_at 6.5418218161441 6.44908434699416 7.17080728686092 6.51470333097039 6.85010101726316 6.80423434777801 6.22513168490973 5.89693587812972 6.11986426527095 5.93925247194527 6.29912305366282 6.16488142848226 5.93294065130994 6.30253776314517 6.33469040073591 6.22540245610688 6.28311253192915 5.94423611876338 5.60289738979452 0.190916847363403 0.188485600898018 0.188886952671487 0.191008676037423 0.188736072039931 0.1943617860344 0.194828942584713 0.193220295062889 0.191664647966543 0.191127928060759 0.197188096272416 0.196546251579144 0.191337616757542 0.187364908489833 0.193844351965932 0.194678803249549 0.191040579876018 0.195211880846757 0.191929038709550 3 3 - 19142149 19142815 19142386.182 19141813 19144306 - gene protein_coding_gene FALSE TRUE AT3G51580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64385.1); similar to Os05g0478200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055846.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01366.1) 0.427622786176856 3.80822482346367 0.00295793375829325 1 3.87451834701002 12.5932042600582 0.427622786176856 0.128211069646562
AT1G13640_at 4.44829937534157 4.48846415229882 3.94453175457541 4.15578623725014 4.96268807092832 4.91104273066692 4.46428242169463 4.76524635397973 4.81032130478356 4.81913107220967 4.65023515953903 4.27307077310083 4.33053589739003 4.26399549902664 4.18881114083223 4.62554838586387 4.27921744120163 3.94020036916476 5.2398777718014 0.21973104990329 0.214410527916413 0.224497882821388 0.214410527916413 0.218393910490408 0.226978756637479 0.221239969394741 0.218825082245484 0.234485989015448 0.221388994185554 0.222984265113515 0.222609305228179 0.214410527916413 0.224665886698522 0.229283313301892 0.214929784622852 0.22398126435801 0.227076828022869 0.219586115369783 1 1 - 4677334 4677688 4677533.545 4677024 4679809 - gene protein_coding_gene FALSE TRUE AT1G13640.1 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G03890.1); similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26270.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); similar to Os06g0283400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057397.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96840.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) -0.342776213570079 -3.80821611748977 0.00295797805541177 1 3.87450522003224 9.15524024519015 -0.342776213570079 0.0646326608904666
AT4G38530_at 0.787243583017884 0.735951750736762 1.17092115448453 0.856242879915153 0.864406288302163 0.996466291841253 1.18205255053031 0.859569379234414 0.415840840834994 0.709758225611648 1.25045336757633 1.19985057244481 1.00022968122318 1.27988262849170 1.51590769072731 1.06142878408612 1.12282188174644 1.56638028016211 0.69554830811235 0.208818439971094 0.210070762671356 0.209641223260455 0.208818439971094 0.208818439971094 0.218116404412579 0.208818439971094 0.209184481157409 0.21018874803412 0.219367133758909 0.212044469328432 0.216111962653444 0.215521185088591 0.212918256991333 0.210191995598464 0.208818439971094 0.216411755827313 0.215485925507572 0.216255391136441 4 4 + 18022159 18022864 18022587.818 18020668 18022979 + gene protein_coding_gene FALSE TRUE AT4G38530.1 ATPLC1 (PHOSPHOLIPASE C 1); phospholipase C Encodes a putative phosphoinositide-specific phospholipase C. There are two genes called ATPLC1, one corresponding to AT4g38530 (this one) and one corresponding to AT5g58670. similar to ATPLC1 (PHOSPHOLIPASE C 1), phospholipase C [Arabidopsis thaliana] (TAIR:AT5G58670.1); similar to phosphoinositide-specific phospholipase C (GB:AAC48991.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909); contains InterPro domain Phosphatidylinositol-specific phospholipase C, Y domain; (InterPro:IPR001711); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoinositide-specific phospholipase C (PLC); (InterPro:IPR001192); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.361687536855093 3.80784824950842 0.00295985044350397 1 3.87395053528755 1.85994097758793 0.361687536855093 0.0817376050070365
AT1G58360_at 9.3012705089309 9.5030544748848 9.96976216155515 10.0737938758543 10.1849007611841 10.1134231270721 10.0861139234706 10.1518902648141 9.33469179174226 9.7772567685231 9.87490431647263 9.59939837404142 9.77605839867247 9.42945795496718 9.43880816465157 9.4687000041553 10.1846491978806 10.0592867815580 9.10625445856362 0.121022189670881 0.108999530983597 0.11302160744372 0.111030411484008 0.113723461818184 0.117105887840573 0.115494935824498 0.115936341002299 0.124494424963562 0.112404442089517 0.115261667541461 0.113290437760277 0.110281340271741 0.108755729914614 0.118634799946912 0.112433677954403 0.116063284722295 0.110786933702755 0.119775568759716 1 1 + 21683294 21683870 21683528.182 21680195 21684148 + gene protein_coding_gene FALSE TRUE AT1G58360.1 AAP1 (AMINO ACID PERMEASE 1); amino acid permease neutral amino acid transporter expressed in seeds similar to AAP6 (AMINO ACID PERMEASE 6), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G49630.1); similar to AAP8 (amino acid permease 8), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G10010.1); similar to amino acid permease 1 [Brassica napus] (GB:CAD92449.1); similar to amino acid permease 6 [Brassica napus] (GB:CAD92450.1); similar to amino acid transporter [Solanum tuberosum] (GB:CAA70968.2); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.323863957249112 3.80690516936404 0.00296465617999539 1 3.8725284467047 19.4905139232172 0.323863957249112 0.0427325706484138
AT4G36390_at 9.48666445808825 9.5884112419526 9.14435288601596 8.84857746587205 9.16665588347186 9.09463229062732 9.6844857969073 9.7224297056173 9.67427551636276 10.0270971066828 9.71235018800336 10.0440718741883 9.4246008149028 9.7173436087912 10.1244677823486 10.0674734341642 9.51383228573877 9.59287805992415 9.9578466472843 0.110899419725867 0.110201885719378 0.122912545286687 0.117792933680218 0.118610733409801 0.116518378800215 0.113852143487015 0.117020278286835 0.123193508714891 0.111747372275116 0.112830571598796 0.110758752516651 0.112853786554755 0.116922826047923 0.112040061996948 0.111594102630026 0.119971366475529 0.116721953811606 0.111853347265720 4 0|4 /|- 17194765 17195144 17194980.3 17194591 17197134 - gene protein_coding_gene FALSE TRUE AT4G36390.1 radical SAM domain-containing protein / TRAM domain-containing protein Identical to CDK5RAP1-like protein [Arabidopsis Thaliana] (GB:Q8H0V1;GB:O23241); similar to radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72090.1); similar to Os11g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068196.1); similar to similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum] (GB:BAD15110.2); contains InterPro domain Protein of unknown function UPF0004; (InterPro:IPR005839); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain tRNA-i(6)A37 modification enzyme MiaB; (InterPro:IPR006463); contains InterPro domain Deoxyribonuclease/rho motif-related TRAM; (InterPro:IPR002792); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.334361168290097 -3.80641262164248 0.00296716931216738 1 3.87178567999486 19.1725430557946 -0.334361168290097 0.0559324467272534
AT2G38300_at 2.27036974715343 2.89507007053715 2.62786727467275 2.70395084588681 3.55692931973008 3.24780947912486 2.54739768341004 2.28549780196033 1.93359105296822 2.22532835618801 2.38543172548008 3.38186949245146 2.58239473747796 1.99086573367204 2.28497355780464 2.90669384796088 2.29642110641816 2.32701775770159 2.42627161635377 0.214087908899678 0.204363298308981 0.205041665119119 0.207393017787114 0.211750065311568 0.222161115302972 0.211856212616439 0.208167766459659 0.203851698581858 0.208751100941463 0.204211751427486 0.211879773035847 0.213500646625847 0.209761196171728 0.206825800987206 0.207588210553544 0.20901750987774 0.212885819240556 0.206359854454873 2 2 - 16051255 16051768 16051552.818 16051038 16053070 - gene protein_coding_gene FALSE TRUE AT2G38300.1 DNA binding / transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G40260.1); similar to myb-like DNA-binding domain, SHAQKYF class, putative [Medicago truncatula] (GB:ABE91131.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.429475111894623 3.80599640308264 0.00296929470996007 1 3.87115799455938 5.12412261282986 0.429475111894623 0.129523737140802
AT1G79210_at 8.23764878707528 8.4133525857317 8.378847375347 8.84355763136778 8.56754955045275 8.52549863725519 8.07407730180398 8.2875648413266 7.0413812762152 7.47780758869427 7.75666003378955 8.06012139527819 7.86374158819119 7.52896036883316 7.09937486840786 7.90167345356453 7.75219953316934 7.61866539335527 7.29018060701485 0.206549381751876 0.211311975858947 0.220044028202063 0.213272562736856 0.207695620191839 0.221228952861373 0.202091911058058 0.215196820360525 0.236782650485601 0.220262553324879 0.217265020053649 0.20249113543849 0.209169137972370 0.210570158232154 0.219221830673615 0.205766286559936 0.224072963843585 0.220386664181073 0.214308919101565 1 1|0 -|/ 29801787 29802779 29802210.8 29800974 29803676 - gene protein_coding_gene FALSE TRUE AT1G79210.1|AT1G79210.2|AT1G79210.3 20S proteasome alpha subunit B, putative Identical to Proteasome subunit alpha type 2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) (PAB2) [Arabidopsis Thaliana] (GB:Q8L4A7;GB:O64532); Identical to Proteasome subunit alpha type 2-A (EC 3.4.25.1) (20S proteasome alpha subunit B) (Proteasome component 3) (PAB1) [Arabidopsis Thaliana] (GB:O23708;GB:Q94EI0); similar to PAB1 (20S proteasome alpha subunit B1), peptidase [Arabidopsis thaliana] (TAIR:AT1G16470.2); similar to unknown [Solanum tuberosum] (GB:ABA81880.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.376793587485074 3.80528190282077 0.0029729469464405 1 3.87008042946709 15.8997442904442 0.376793587485074 0.0938608447643356
AT1G69770_at 2.97849299002881 3.02393024633025 2.84817715712071 2.77896370807072 1.77784164329434 2.33311098516946 3.28382289226011 2.60745308245102 2.87185991530851 3.94073275442679 2.85598627310232 3.21554123183087 2.84783313564566 2.89264430310839 3.07988410935469 2.58073400863711 2.57939538903918 3.04615482688747 3.03527663051984 0.212487376123421 0.211634794345286 0.211271944830793 0.216081670339734 0.211161931584683 0.214539848972353 0.218754649908768 0.225141684449531 0.211902174458569 0.210236899908297 0.220305249064545 0.213058072770832 0.212364276620001 0.213756931088356 0.217231754319815 0.211216860276754 0.224887575909378 0.210236899908297 0.2156284176744 1 1|0 -|/ 26252171 26253221 26252629.222 26251981 26257248 - gene protein_coding_gene FALSE TRUE AT1G69770.1 CMT3 (CHROMOMETHYLASE 3) Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. Identical to DNA (cytosine-5)-methyltransferase CMT3 (EC 2.1.1.37) (Chromomethylase 3) (Protein CHROMOMETHYLASE3) (CMT3) [Arabidopsis Thaliana] (GB:Q94F88;GB:Q94FN4;GB:Q9C9L8); similar to chromomethylase 2 (CMT2) [Arabidopsis thaliana] (TAIR:AT4G19020.1); similar to CMT1 (CHROMOMETHYLASE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G80740.1); similar to DNA (cytosine-5)-methyltransferase 1 (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) (GB:Q9AXT8); similar to chromomethylase [Brassica rapa] (GB:BAF34637.1); similar to chromomethylase-like protein [Nicotiana tabacum] (GB:BAC53936.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025); contains InterPro domain Chromo; (InterPro:IPR000953) -0.467126434869037 -3.80490608570685 0.00297486983933125 1 3.86951361954249 5.78892146798356 -0.467126434869037 0.152116448040294
AT4G38860_at 8.58100147746139 9.0243099748044 9.01640399755184 9.44750259725463 10.0785120661669 9.86742665613965 9.5396400028775 9.54424689725263 10.2085362822251 9.72740420373597 10.8376170746135 10.4795827911605 10.7327439992835 10.5569596217162 10.4994759312011 10.6688212362482 10.3969065091936 9.61232485145795 10.3511064036722 0.141969051116181 0.135629298971493 0.141815506626366 0.138026358082950 0.130636591246355 0.139362280652079 0.135091491364248 0.139974515970165 0.13455686197896 0.139948917835104 0.132688646941570 0.130636591246355 0.131083539852488 0.134567702521599 0.132764328683011 0.134299487090468 0.136246025229586 0.138619215316233 0.131108656900616 4 4 + 18130351 18130639 18130499.909 18130262 18131054 + gene protein_coding_gene FALSE TRUE AT4G38860.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21220.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.403766723247089 3.80397686993275 0.00297962976695845 1 3.86811209367291 19.6717486078905 0.403766723247089 0.113075922287748
AT3G14020_at 5.80422017354458 5.37088209662791 4.54188494332342 4.28795412336251 7.9568179588007 7.20554132842285 4.74217774239124 3.81379842203161 3.66470274526044 4.22078565459711 4.23015386012397 4.3712901724211 4.85911160883126 4.11361156623232 3.64644753086649 4.03897602602165 4.29075977205747 3.57049965594417 4.11958645805574 0.25837634177036 0.246902981194654 0.247846058440536 0.242624793640314 0.255234975611499 0.255974856639366 0.240932613690226 0.243555953490833 0.248621490065922 0.246205597540445 0.244629022037884 0.246050134821158 0.240204503540453 0.246604770053831 0.252008818097198 0.244808388570854 0.250183089680927 0.254337623901693 0.241995478970979 3 0|3 /|+ 4643549 4644192 4643847.875 4642975 4644308 + gene protein_coding_gene FALSE TRUE AT3G14020.1 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-6 (AtNF-YA-6) (NFYA6) [Arabidopsis Thaliana] (GB:Q9LVJ7); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT1G54160.1); similar to RAPB protein [Oryza sativa (indica cultivar-group)] (GB:CAA71844.1); similar to Os03g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049132.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.601847317293207 3.80294607501542 0.00298491926938863 1 3.86655723001402 9.53630854524647 0.601847317293207 0.22420882955774
AT3G03980_at 5.94370965221057 5.59038515453015 5.22999114654991 4.95845881992114 5.01377444230252 5.24075316285297 5.54500730294509 5.73177032932646 5.84973489140068 6.07632207381828 5.60931501649938 6.00661495084294 5.87959416233373 5.64924977172519 6.35020882018127 5.69978008482533 5.59312654725824 5.91710714746851 6.05953644744849 0.162471096560331 0.161531150304686 0.163375351939292 0.164316509826501 0.163825280828017 0.168722280834018 0.157098090579666 0.165115286907082 0.167731617789987 0.159562590183177 0.163890978086916 0.159248234120933 0.161396369429456 0.169925658676673 0.167528486982436 0.165946902167112 0.158682806000848 0.160773202562001 0.163342353765942 3 3 + 1032029 1033004 1032512.909 1031749 1033214 + gene protein_coding_gene FALSE TRUE AT3G03980.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G04000.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.374523479213545 -3.80205520125243 0.00298949860690793 1 3.86521331751893 11.323392434762 -0.374523479213545 0.0923806857987576
AT1G71440_at 5.04618646945255 5.45507021447637 4.58645195032799 4.45755977105736 5.19899830284746 4.62701009378525 5.26338833362288 5.40890318968837 4.83262235728005 5.18554063319287 4.96692682537447 5.16460554177597 4.75915413761144 5.14787425662497 4.90450623488782 4.86508487873316 4.2076904454776 4.72958627760992 5.3263373364082 0.224297118476307 0.228561623265815 0.22826577335836 0.232085209815986 0.239096530495650 0.228628359808493 0.239457817412448 0.225040562967128 0.262135250622138 0.231055289367190 0.224858475474064 0.233195702107362 0.229182678370497 0.226697511495073 0.229066209886415 0.225801721606099 0.238511852685726 0.240322474022553 0.225978322345414 1 1|0 -|/ 26924960 26926250 26925552 26924722 26928048 - gene protein_coding_gene FALSE TRUE AT1G71440.1 PFI (PFIFFERLING); protein binding Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G10020.2); similar to PREDICTED: similar to tubulin-specific chaperone e [Tribolium castaneum] (GB:XP_970901.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain CAP-Gly; (InterPro:IPR000938) -0.423768444918656 -3.80179352341675 0.0029908450859252 1 3.86481854891244 9.9844520491851 -0.423768444918656 0.126240286835860
AT3G12760_at 9.9291847832431 9.95686654747135 10.3413875814613 10.2762664064087 10.5309621109942 10.3610686838658 9.84651612493167 9.62767997289455 9.65527555497425 9.55001257745316 9.8473120332302 9.53472074926452 9.67665145599053 9.81686145518757 9.57930807349549 9.86093980420324 9.81183835700589 9.67635202557154 9.6141112550735 0.0673943939419557 0.067362884286085 0.068990279365241 0.0683231483325554 0.070970913862063 0.0693392003057887 0.0690510819735044 0.0693872955677376 0.0761997162889766 0.0736452774996987 0.0693201601201841 0.067362884286085 0.074645063990855 0.0697096812255285 0.0692827915558658 0.067362884286085 0.0731838419363785 0.0688611330390518 0.0715211561797389 3 3|0 +|/ 4055621 4056766 4056329.333 4054746 4056987 + gene protein_coding_gene FALSE TRUE AT3G12760.1 similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G15860.1); similar to SM10 [Nicotiana tabacum] (GB:ABI49160.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Protein of unknown function DUF298; (InterPro:IPR005176); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.328195435145337 3.79824235014966 0.00300918010876913 1 3.85946037988664 19.7747237547808 0.328195435145337 0.0494827669814202
AT2G17540_at 6.06630121876696 6.09271948679649 5.91857721648284 5.83011210913754 6.76102282813378 6.45589995740009 6.03599186604091 5.98823222398604 5.86991902465846 5.34089523693462 6.42675156692725 6.05631921036343 6.25453712952636 6.02840969477813 5.86463603898905 6.19853691547275 6.03075213704687 5.74833258130824 5.60374831630503 0.161909472018578 0.159308068430215 0.167156389840329 0.164046252159721 0.158236238535227 0.166725604529969 0.165921435989164 0.161247960339360 0.163928122179131 0.157999999408095 0.154823454431726 0.158932479596832 0.170322674510041 0.162119112243607 0.158269291704817 0.161745239004019 0.165606352319973 0.175261437620367 0.159747788065167 2 2 - 7637818 7638314 7638132.818 7637502 7638994 - gene protein_coding_gene FALSE TRUE AT2G17540.1|AT2G17540.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35510.1); similar to Os06g0728500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058643.1) 0.333386022779885 3.7968223021854 0.00301654449957175 1 3.85731730557129 11.9840514143102 0.333386022779885 0.0557829434198754
AT1G49380_at 7.79044043496366 8.2286546230732 7.60702300282923 7.50217951316655 8.20224480970561 7.77556720642918 9.19524901497585 9.00712573654469 8.48341225061401 8.867742419695 8.36458057489243 8.71432809748129 8.40792217888189 8.64709699126906 8.71969947062462 8.73441566356722 8.2503926500524 8.73410377305193 8.42185422142155 0.145293719430812 0.138265735852563 0.144083368515137 0.140707544843458 0.141926657457207 0.152478785415809 0.144673614765157 0.135540171748413 0.149780854141561 0.138638311635841 0.142318677108841 0.135361557229712 0.140051529400564 0.135361557229712 0.140125568724246 0.139464924319477 0.165588476715166 0.145663820672838 0.145374200968425 1 1 + 18281906 18282806 18282280.091 18280375 18283196 + gene protein_coding_gene FALSE TRUE AT1G49380.1 cytochrome c biogenesis protein family similar to CCS1 [Chlamydomonas reinhardtii] (GB:AAB95195.1); similar to Os03g0769600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051397.1); contains InterPro domain ResB-like; (InterPro:IPR007816) -0.401524679144646 -3.79488542356085 0.00302661929447468 1 3.85439384619867 16.7448457371549 -0.401524679144646 0.112214704635864
AT2G42190_at 7.90168789188108 7.99352676698581 7.71244868000157 7.6585189980165 8.19277174327895 7.99696753629473 9.0875693070516 8.77667761968751 9.02170461227098 8.96714356446337 9.1607791459167 9.50848724896214 8.57445731655882 9.16857824927763 8.83802030011982 8.6297807628373 8.27398530737747 8.53298505620688 8.92822422040686 0.145507840777691 0.150025899020200 0.158070963630541 0.157201333967536 0.151061707496627 0.15529562579535 0.147563358933204 0.144206971974953 0.156395041889965 0.144206971974953 0.151239352940407 0.144611994615690 0.144363866092725 0.146891945190979 0.146061154869019 0.144206971974953 0.153569956667809 0.151405042733518 0.145577212349721 2 2 + 17590735 17591093 17590928.727 17589947 17591272 + gene protein_coding_gene FALSE TRUE AT2G42190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57930.2); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE85991.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.343080974655100 -3.79399165198949 0.00303128005014862 1 3.85304465935773 17.0691418874601 -0.343080974655100 0.0662000747562538
AT3G60070_at 3.76277582779207 4.15923230213082 2.97763149983054 3.25001370650617 4.44978459437236 3.4927629199936 4.13288907471069 3.60489635494310 2.67065082343711 4.17615304658643 3.0862675256326 3.85315192915682 3.13289537324257 2.91348628611614 2.83479517650025 2.79897840268586 2.78054638127540 2.75682109764135 4.49156376703101 0.257542170230315 0.271684870195862 0.251181518993808 0.258654349761534 0.2562054146475 0.260299304737352 0.259588084573148 0.271068416978423 0.28695887786103 0.24916474957658 0.255697513010975 0.24916474957658 0.255384630971211 0.254084681351946 0.255261460456091 0.251365057140713 0.258161562071146 0.260997178988771 0.249860609787154 3 3|0 -|/ 22194584 22195485 22194824 22194220 22197305 - gene protein_coding_gene FALSE TRUE AT3G60070.1 lactose permease-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44280.2); similar to Os07g0578200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060093.1); similar to sugar transport protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83077.1); contains domain Multidrug resistance ABC transporter MsbA, N-terminal domain (SSF90123) -0.566119158602654 -3.793949578799 0.0030314996325941 1 3.85298114559787 7.1282851103097 -0.566119158602654 0.206656297406898
AT4G32570_at 8.85756276757184 8.10351874814916 7.77741702522655 7.23551685972145 8.67902081106483 8.15125879094715 9.67270743963295 9.23176625929064 8.64804525555799 9.15436063927927 8.93950957833524 9.36309033766135 8.85239237266339 8.92974801263636 9.26325177114866 9.0240178268835 8.24562333123168 8.62399148864395 9.21500479152928 0.104939307011664 0.107377118126848 0.111313066176139 0.119430480794649 0.104063264783419 0.103247010693832 0.107933776939826 0.107299020121636 0.112856638199271 0.106631314656207 0.106241387661258 0.104727645433997 0.109559637800440 0.104463169900339 0.103191597055953 0.103191597055953 0.121535106245498 0.103191597055953 0.106627522321868 4 4|0 -|/ 15716736 15717400 15717044.4 15716238 15718864 - gene protein_coding_gene FALSE TRUE AT4G32570.1 contains InterPro domain ZIM; (InterPro:IPR010399) -0.553092952071406 -3.79280543444803 0.00303747730973127 1 3.85125385861724 17.4190994137119 -0.553092952071406 0.199966146487207
AT3G19030_at 8.2379234234773 8.28779090425737 7.86914997992636 8.21346245834487 8.36018772219379 7.94741540219355 8.66178983561825 8.97055040545242 7.65994216284002 8.11054466865625 7.03225637432258 8.1504801579473 7.57877437209667 7.65333251450105 7.13618471928687 7.86577143857559 7.98947762500344 7.35323597191571 8.05550087692235 0.171892772771427 0.173315541744878 0.179689984798834 0.180900227703589 0.177251185476829 0.182458770409146 0.176385671498081 0.180279123304414 0.180199571662746 0.172292487977892 0.184661036929938 0.173261355826776 0.177361383142975 0.185394557002122 0.196687135672221 0.177187977018168 0.187901008292594 0.182962709876036 0.171892772771427 3 3 - 6564123 6564278 6564194 6563985 6564430 - gene protein_coding_gene FALSE TRUE AT3G19030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49500.1) -0.394508253818372 -3.79196497621848 0.00304187613115334 1 3.84998493513756 16.0870012911892 -0.394508253818372 0.107621626324914
AT1G21000_at 10.017046894492 10.2929111506104 11.0171228178519 11.0589481795847 11.0430702336691 11.1496090871375 10.0598536874552 10.1965805719141 9.46041649962623 9.76110007325713 8.98580783594252 8.75566464315592 9.91941978511866 9.40214961578447 8.18561550198241 9.93437424850525 10.2063607239802 9.43782363201212 9.612224077138 0.130159223570892 0.127433759850989 0.130045425460576 0.129108464396465 0.132847131398495 0.129023578153987 0.130725709835108 0.122591228822525 0.129935190506705 0.122499512468989 0.129346172463007 0.136879079603057 0.127858242297941 0.128252216785177 0.144114707882663 0.122499512468989 0.134050446878027 0.132364809874265 0.128739986485899 1 1|0 +|/ 7338136 7339040 7338712.1 7337717 7339441 + gene protein_coding_gene FALSE TRUE AT1G21000.1 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G76590.1); similar to Os06g0624900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058108.1); similar to putative zinc-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35686.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 0.333872309206303 3.7915741506592 0.00304392389555865 1 3.84939483686598 20.0867172686647 0.333872309206303 0.0568439703491378
AT1G76350_at 3.19897064824864 3.77129350765147 4.89875879493582 4.85846736936104 4.3363062305504 3.56346456175185 3.72404160537403 4.0805009669511 2.70326938973082 3.59385831096645 4.42249439659088 3.7379873455016 4.14400900225966 4.04933482248475 3.03659230346189 3.86584781290468 3.83656964278943 2.86716273893723 4.03435285809361 0.28773302228556 0.288190874446469 0.30002240838519 0.290225126834798 0.284904942383999 0.304872604126113 0.287261520839970 0.286229101543474 0.296722104359186 0.285378942986041 0.28009779098085 0.287968095284782 0.282744833220844 0.291430341072787 0.284435958061436 0.280528124436508 0.296682812138623 0.298783919431144 0.290726524457187 1 1 + 28647126 28647679 28647340.364 28644540 28647980 + gene protein_coding_gene FALSE TRUE AT1G76350.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20640.2); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.510860231139719 3.79044916894505 0.00304982630912061 1 3.84769614730134 7.64838876612632 0.510860231139719 0.177625618125515
AT2G31130_at 5.92803588763255 5.97977095896421 6.5773804951429 6.31485315010503 6.75063885743621 6.66364973903868 5.94560626266264 5.62504202120038 5.09106699324313 5.6769382373596 5.3495401616267 5.05557113609332 5.29920885989614 5.60988547123864 4.98778817796933 6.03272115776968 5.84289746642182 5.57406807829916 5.65524423513708 0.174150310408543 0.174246743156709 0.178613175664446 0.173710088006715 0.169604701680679 0.173233084315443 0.173074445721858 0.175743947601837 0.185481639405549 0.178211444041795 0.170447009629533 0.174068343258556 0.173726689698879 0.174790332256849 0.174224588964940 0.174448185568476 0.175469944643638 0.169604701680679 0.173132322160003 2 2 - 13270953 13271825 13271327.091 13270656 13273637 - gene protein_coding_gene FALSE TRUE AT2G31130.1 similar to hypothetical protein MtrDRAFT_AC135231g7v1 [Medicago truncatula] (GB:ABE82891.1) 0.350780176450090 3.78940973043634 0.00305529044230689 1 3.84612648536264 11.6948104476450 0.350780176450090 0.0738125641653172
AT1G73150_at 2.68333618681353 2.62748535826188 2.88277666244748 2.67627765834452 2.49933106898555 2.52063012982734 1.92700297789526 2.19555589510086 2.33882525415265 2.38029373133142 2.58535962521424 2.46239980729087 2.63192599255579 2.64603274987854 2.78737962025296 2.86040991906936 3.22036431695984 2.21583495012020 2.15225971739604 0.197752752784371 0.192223440038704 0.198088663451327 0.194344981756610 0.194744371342352 0.203580080566375 0.196419556327003 0.200184505715152 0.202254743058350 0.200627611805173 0.197617338628918 0.195027508434924 0.192223440038704 0.193427704615507 0.208578174643094 0.195199870733628 0.192290779288736 0.200793175754596 0.200368814305264 1 1|0 -|/ 27508134 27508776 27508546.889 27507773 27509773 - gene protein_coding_gene FALSE TRUE AT1G73150.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G17790.1); similar to Bromodomain [Medicago truncatula] (GB:ABE82885.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.336081290212182 3.78868321145428 0.00305911563584998 1 3.84502928511261 4.98488596235677 0.336081290212182 0.0595306718124754
AT3G11090_at 8.48664952619846 8.78959283670399 8.8325085819734 8.93910843004127 8.2488735364031 8.24488204109394 8.59682305940175 8.98058583726677 8.59322503690238 8.13460973124596 7.25080870909118 7.59384566218348 7.6351472871568 7.75167483943433 7.56213255320905 7.99984373527644 8.03831481777262 7.83934063807725 8.15077078391752 0.170199125670326 0.169322837418767 0.170022152268065 0.169300173922660 0.174133180696183 0.174142051493679 0.171307135303995 0.174407200438628 0.1800146804886 0.177351405154573 0.192378557645093 0.184100417967575 0.178142611464569 0.177226198371530 0.169813212724575 0.173583657396486 0.181254733515823 0.171367000321146 0.172891829132475 3 3 + 3475063 3475514 3475295.455 3475042 3475539 + gene protein_coding_gene FALSE TRUE AT3G11090.1 LOB domain family protein / lateral organ boundaries domain family protein (LBD21) Identical to Putative LOB domain-containing protein 21 (LBD21) [Arabidopsis Thaliana] (GB:Q9SRL8); similar to LOB domain protein 25 / lateral organ boundaries domain protein 25 (LBD25) [Arabidopsis thaliana] (TAIR:AT3G27650.1); similar to Protein of unknown function DUF260 [Medicago truncatula] (GB:ABE91408.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.365524827297477 -3.78561986112832 0.00307529910538295 1 3.84040224421064 16.6407565049506 -0.365524827297477 0.086601363944445
AT3G24982_at 2.54343899527564 2.86873647345167 3.10389594161775 3.40917059696658 2.46199674709587 2.20992559013907 1.30196084106091 1.51939395811034 1.46880360344799 1.8569032687245 1.61658254494366 1.62560014137772 1.76085954693655 1.47149519031628 1.51805659192909 1.60898841838412 1.58468132433874 1.70395669702574 1.45380218079296 0.222870310283851 0.227851931080852 0.237419214481929 0.245404833361874 0.228832897406482 0.226304749888771 0.221918159689027 0.231082915432329 0.231868960902909 0.224985121095294 0.226197696226175 0.221918159689027 0.231724882999489 0.223739593684035 0.22615868860471 0.226834431806636 0.226330473469005 0.223417550866509 0.224978666588626 3 3 - 9106176 9106711 9106318.909 9106007 9108944 - gene protein_coding_gene FALSE TRUE AT3G24982.1 protein binding similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25010.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.377986262282425 3.78421117033060 0.00308277085964092 1 3.83827409454939 4.02953851357888 0.377986262282425 0.0963260396368243
AT1G18870_at 2.03524541190537 2.22118576309557 2.00668793957246 1.7423234579532 1.67097757989303 1.75563020016368 3.12575684690043 2.45027327547392 1.05788067946036 2.03115863714219 3.45499034002986 4.23959639639302 2.75746266415424 4.16144982825994 2.94971664628783 2.29137216696668 1.71162999380468 3.04387537335011 1.57695055074975 0.255370224000743 0.251289794806268 0.261812528745093 0.273466711082907 0.251554464258401 0.263317922806208 0.251730658591992 0.249857429890988 0.275423077356368 0.255391517389950 0.266214726569681 0.291806951456310 0.260956460999738 0.265847901516694 0.266678909952115 0.254519603536011 0.254716996890481 0.254874310210165 0.249857429890988 1 1|0 +|/ 6517820 6519141 6518600.444 6515657 6519273 + gene protein_coding_gene FALSE TRUE AT1G18870.1 ICS2; isochorismate synthase Encodes a protein with isochorismate synthase activity involved in phylloquinone biosynthesis. Mutant studies of this gene's function suggest that its function is redundant with that of ICS1 (AT1G7410). similar to ICS1 (ISOCHORISMATE SYNTHASEI), isochorismate synthase [Arabidopsis thaliana] (TAIR:AT1G74710.1); similar to isochorismate synthase [Capsicum annuum] (GB:AAW66457.1); contains InterPro domain Isochorismate synthase; (InterPro:IPR004561); contains InterPro domain Anthranilate synthase component I and chorismate binding protein; (InterPro:IPR005801) 0.428360595211733 3.78351259027872 0.00308648312790096 1 3.83721863832679 4.44180587533965 0.428360595211733 0.130413254608348
AT2G32920_at 8.11798352565112 8.05519559340702 8.48960832176516 8.37173472159602 8.16737515828157 7.60930815327704 8.0696720584366 7.50597640906927 5.93633675720713 5.96022795508662 6.30251971746781 7.2193547017477 6.31178789873679 6.11569310667062 7.48442712742307 6.10388123734606 6.65371997711517 6.67804449186746 5.94042648009907 0.23464431535136 0.242161757619337 0.249029814330841 0.236978492216180 0.236765635511743 0.23464431535136 0.238274928734413 0.240699960931118 0.273433473408259 0.240960697458609 0.258894823972530 0.242818712462092 0.248195249688351 0.243566645248882 0.244409811756299 0.23578523947248 0.271198798408016 0.249706235941536 0.239145024440627 2 2|0 -|/ 13969850 13970552 13970259.556 13969395 13972534 - gene protein_coding_gene FALSE TRUE AT2G32920.1 ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to Os09g0451500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063331.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09966.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) 0.442657246794085 3.78335288735171 0.00308733244238191 1 3.83697734116861 14.3255278742327 0.442657246794085 0.139201806519377
AT4G35490_at 7.59918549362574 7.60928360743475 7.41615994524425 7.51455643265314 7.91008055377423 7.95775505839578 7.64486589410411 7.4876600325575 7.37174016078554 7.32073978862098 7.89410244826006 7.88440545564911 7.96906540280838 7.67870728961081 8.0562804154643 7.6184719650901 7.80095925744834 7.65062482973203 7.21308533189237 0.177925724506852 0.178544797657043 0.182643917207607 0.192350879613788 0.182026052819536 0.189644052261231 0.178152510768194 0.184927912855375 0.184126062226641 0.18197428978552 0.186348984188022 0.178833343285122 0.176744219583545 0.188297506072163 0.178140138364908 0.178488611502360 0.189226396979971 0.18462378010031 0.179632462939317 4 4 + 16855951 16856291 16856100.727 16855907 16856679 + gene protein_coding_gene FALSE TRUE AT4G35490.1 ribosomal protein L11 family protein similar to PRPL11 (PLASTID RIBOSOMAL PROTEIN L11), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G32990.1); similar to mitochondrial ribosomal protein L11 [Triticum aestivum] (GB:BAB69029.1); similar to Os10g0466200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064803.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911); contains InterPro domain Ribosomal protein L11, bacterial; (InterPro:IPR006519) 0.315805639913962 3.78246840432497 0.00309204058637341 1 3.83564090745386 15.2029094906108 0.315805639913962 0.0331842784148456
AT1G13120_at 6.38559453368328 6.34611924683846 5.94068020338724 6.12743940880472 6.6319764511114 6.03226886911557 6.71808458560773 6.5340391884306 6.01124979749393 5.76996447527351 5.75101309801257 5.54405503969518 5.53637652569436 5.5718059014286 5.15303702994999 6.02091876778793 5.32764798819623 5.68006439400667 6.41118718030215 0.220169054899065 0.220037894304599 0.228675033279647 0.216390804933966 0.212314468119576 0.222274103583385 0.213511054138652 0.218117733547943 0.248040585838527 0.220377602984350 0.221946332676547 0.214914180375483 0.216764500138227 0.222945532851211 0.22586721521945 0.215467722183458 0.230340772232303 0.218407723081267 0.219893643809802 1 0|1 /|- 4469391 4470114 4469726.625 4469179 4473211 - gene protein_coding_gene FALSE TRUE AT1G13120.1 EMB1745 (EMBRYO DEFECTIVE 1745) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05523.1); similar to putative GLE1L protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16837.1); similar to Os02g0596100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047319.1); contains InterPro domain GLE1-like; (InterPro:IPR012476) -0.401943565064354 -3.78123916557057 0.00309859623150157 1 3.83378339485285 12.1581496412655 -0.401943565064354 0.113474146959894
AT3G01510_at 5.46118390446365 5.35616971047455 5.21770300912076 5.03382753436611 5.10217710445596 4.79851489832695 6.67038236711816 6.89005898413826 5.29643813890731 6.29257950746436 5.88689028685617 6.23983165657384 5.74855979504849 6.38968404229722 6.58784497891157 5.87241487601807 5.81368637370715 6.48560073983772 5.73032718561864 0.194718361530198 0.180878940567150 0.201583124752604 0.20310193254649 0.184205503350809 0.189638775746181 0.207236779151641 0.185802089934315 0.184383781350152 0.191232108471694 0.180459391477432 0.180459391477432 0.180459391477432 0.189090296963318 0.184237424144136 0.18074691001805 0.191896846483263 0.186549153183070 0.190596632429499 3 3|0 -|/ 198883 199943 199444.222 198686 201749 - gene protein_coding_gene FALSE TRUE AT3G01510.1 5'-AMP-activated protein kinase beta-1 subunit-related similar to SEX4 (STARCH-EXCESS 4), oxidoreductase/ polysaccharide binding / protein tyrosine/serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52180.1); similar to Os08g0379300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061690.1); similar to protein tyrosine phosphatase-like [Solanum tuberosum] (GB:ABB87109.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340) -0.350721977660851 -3.78057871586469 0.00310212441387386 1 3.83278530677404 11.5168417078846 -0.350721977660851 0.0744953037966416
AT3G16910_at 6.8404283409008 6.84943248659692 7.14317543422485 7.44908035312491 6.7653573811361 6.43163027620264 8.18174690471251 7.90202673701608 6.60115926205026 7.34887590630462 6.40091946328787 6.22663271891503 6.94522974399667 6.7955661807426 6.51125742361958 7.61325378313046 7.33627107640219 7.08280031058663 7.38557367884281 0.207254121141652 0.207804344570614 0.205492788142836 0.220803710162809 0.204261702166449 0.210789340797976 0.207739066037696 0.220053065155458 0.231458440748218 0.216723738216116 0.216167728431780 0.213394391546819 0.208624526598116 0.211968497686556 0.223021295224938 0.203591338987239 0.207023695269153 0.226345041074118 0.216060923611782 3 3 - 5773321 5773797 5773581.727 5773061 5775507 - gene protein_coding_gene FALSE TRUE AT3G16910.1 AAE7/ACN1 (ACYL-ACTIVATING ENZYME 7); AMP binding / acetate-CoA ligase Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle. similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G20560.1); similar to Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1] (GB:YP_421864.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95517.1); similar to Os03g0305000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049879.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.371988017140945 -3.77994523773793 0.00310551242036163 1 3.83182792814966 14.1832902158982 -0.371988017140945 0.0921060662721983
AT3G18050_at 9.36392720530948 9.50897293794835 8.33122709781807 8.43117838859932 8.83936820341274 9.300246384155 9.3984754304044 9.75764204257426 10.0441980833887 9.88616309617486 10.3642275130145 10.1961745214645 9.74060009184831 10.0388615486368 10.1923582718550 9.7032268759766 9.41414864362855 10.0965389477051 9.97059178067125 0.144053216845642 0.141970124932510 0.151750938355187 0.148772995153433 0.142531287358651 0.146707004470186 0.136640674001529 0.148809183739368 0.148452985625929 0.140629138705535 0.142876787471405 0.145276451353187 0.141838890589445 0.138460006974393 0.141474473653683 0.139190405148059 0.143804473271626 0.146634189606521 0.143322767509685 3 3 + 6181370 6182546 6181992.273 6180865 6182860 + gene protein_coding_gene FALSE TRUE AT3G18050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28100.1); similar to hypothetical protein MtrDRAFT_AC139526g8v1 [Medicago truncatula] (GB:ABE80139.1) -0.390233326937479 -3.77848121184615 0.00311335708133618 1 3.82961514889106 19.0840053971999 -0.390233326937479 0.105611261378155
AT3G53430_at 10.5048045252059 10.56669820907 10.0558533789227 10.1804950682351 10.1390641516417 9.93297732357064 10.6429085643768 11.0211907165812 10.5363282318878 10.3155139973917 10.3674878813169 10.4436167946606 10.2783097173569 10.2013712670848 10.6677237865746 10.0251084987361 10.0319031673930 10.0912071484124 10.2460591115815 0.09499072868807 0.0925513788574963 0.0978314259684404 0.09639710936716 0.0952701929075368 0.0987724714674332 0.0991739535167986 0.0952921024195228 0.0944345868350314 0.094910768760045 0.096636996488656 0.0955072973762025 0.0945005530911203 0.0933266744412995 0.09419220868323 0.095797024611545 0.0984934827880572 0.0933432521463798 0.0972978406657644 3 3 - 19820940 19821342 19821153.455 19820665 19821447 - gene protein_coding_gene FALSE TRUE AT3G53430.1 60S ribosomal protein L12 (RPL12B) Identical to 60S ribosomal protein L12-2 (RPL12B) [Arabidopsis Thaliana] (GB:Q9LFH5); similar to 60S ribosomal protein L12 (RPL12A) [Arabidopsis thaliana] (TAIR:AT2G37190.1); similar to 60S ribosomal protein L12 [Capsicum annuum] (GB:AAR83868.1); similar to Os02g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047832.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) -0.354714552072182 -3.77649736315911 0.00312401985202459 1 3.82661626943202 20.6951530653566 -0.354714552072182 0.0783415130028001
AT2G04040_at 3.25331413138414 2.71301709514374 3.56962838659831 3.30100436371769 2.57243407295585 2.39071710681360 2.08672697019201 1.8339463699898 1.87646474939424 1.72884980774368 2.79641067573332 1.84249769495636 2.29701637902388 2.68736152742654 2.14095853783804 1.76194070899532 2.78315084726490 2.08657577052522 2.30896172217345 0.236078390037317 0.248408021604895 0.245656014914506 0.233582069152443 0.238014022770364 0.247429233647399 0.253629628721143 0.255848645602559 0.241941532216213 0.240198903255470 0.240762979612360 0.233582069152443 0.233582069152443 0.238787201778620 0.248315804054945 0.234865397032762 0.239744306230107 0.245444339925690 0.233582069152443 2 2|0 -|/ 1334816 1335293 1335052.333 1334509 1336486 - gene protein_coding_gene FALSE TRUE AT2G04040.1 ATDTX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04080.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04050.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04070.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.407379216063633 3.77570758030219 0.00312827528575712 1 3.82542226130046 4.85055578417818 0.407379216063633 0.117498744093514
AT1G65720_at 11.2817261996296 11.5541498799072 11.6772582121785 11.8173190862914 11.6948902360478 11.6385410647863 11.2203222746954 11.4786205348225 11.0974443033295 10.9953802320724 11.6118051167374 11.3661025656814 11.5495426503896 11.4167214494913 11.1126023872020 11.3486045291197 11.3203394832181 11.5438954897729 11.0319920406295 0.0888204276492188 0.0899224026562374 0.0930302893302812 0.0900879835455148 0.090614745223821 0.0893583276383021 0.0929729197315952 0.088490194548054 0.111102640019487 0.0908335479553236 0.0902362574895804 0.087715967316559 0.089119769439621 0.0914029304190696 0.0884454111439442 0.0894831722253276 0.091906802575771 0.0954653792680133 0.0924759446863188 1 1 - 24444140 24444644 24444347.727 24443922 24444736 - gene protein_coding_gene FALSE TRUE AT1G65720.1 similar to Os03g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048714.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN61478.1) 0.345196805585053 3.77347367757663 0.00314034431669403 1 3.82204459057844 22.7705070531925 0.345196805585053 0.0700230002889986
AT3G60290_at 8.71274162003315 9.10262892102027 6.70067043744372 7.42924125212881 9.4045614544513 8.99597480159077 8.66816524242216 8.84240487711631 10.3592929988856 9.82428572864339 10.1339872327264 9.96391017027247 9.80907276083276 9.8688430724989 9.5539944670879 9.86267970802342 8.9700973869987 9.63249543440473 9.77922146911302 0.131472854485449 0.131151085998292 0.167819140185724 0.154225378958589 0.131151085998292 0.148797668932675 0.144462614380077 0.133564407389764 0.140412037280155 0.131284377937794 0.136151387372236 0.137143892209112 0.132573844069117 0.143805299651733 0.132477919911089 0.135417593359367 0.145158515645765 0.135117037536608 0.131151085998292 3 3 + 22294835 22295294 22295066.909 22293604 22295531 + gene protein_coding_gene FALSE TRUE AT3G60290.1 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G44800.1); similar to Fe2+ dioxygenase-like [Capsella rubella] (GB:AAR15457.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.481044107592995 -3.77297562466391 0.00314304169652507 1 3.82129144870057 18.3380411231023 -0.481044107592995 0.162351658981028
AT3G53340_at 4.52837502116049 5.30696549114444 5.40286278528563 5.78793786746962 5.69761901309537 5.00099557137907 3.99463010910571 4.81187931221766 5.24417234874204 4.99154972681222 5.41132000798858 5.50889430027513 5.80420124860591 5.81619037031749 5.43014314143373 5.55651503526962 4.91411347512969 5.68563567019933 4.9896123737576 0.256341418177277 0.249974053969128 0.264878589747489 0.257879194871596 0.246971506511058 0.254639307435486 0.250597502363694 0.249485553566849 0.256430299336341 0.247581744011818 0.24466622185535 0.241354666646302 0.240878908517688 0.250102864893979 0.244246976431591 0.240911955520391 0.262242928067339 0.247191114288076 0.246988149662811 3 3|0 -|/ 19785364 19786501 19785831.333 19785360 19786969 - gene protein_coding_gene FALSE TRUE AT3G53340.1 CCAAT-box binding transcription factor, putative Identical to Nuclear transcription factor Y subunit B-10 (AtNF-YB-10) (NFYB10) [Arabidopsis Thaliana] (GB:Q67XJ2;GB:Q9LFI3); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G37060.3); similar to transcription factor NF-Y CCAAT-binding-like protein-like [Solanum tuberosum] (GB:ABB55377.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.626328249474416 3.77225215468259 0.00314696417497393 1 3.82019738304225 10.3619022159854 0.626328249474416 0.239020155899414
AT3G12930_at 7.72611216272886 8.13476389911782 6.00220085256426 7.23654266751368 7.8586031007747 7.12334426845632 8.696076738446 8.6159161293158 7.5646655529679 7.83916021849751 6.95743484148968 7.88572721173504 7.54733208057754 7.48276338055543 8.27193281202499 7.6901005492563 7.33601059750883 7.16713402525771 7.50622263564259 0.236019760156824 0.223907689095334 0.268409637186124 0.234903252232761 0.2320226789306 0.243039830157906 0.239389464342204 0.229871558456008 0.255488534047303 0.222202544323288 0.226875893625665 0.222202544323288 0.225425440709893 0.241569257016432 0.232922273372378 0.223956021170100 0.2551592107435 0.23571231027328 0.224563243175793 3 3 + 4128599 4129585 4129070 4128414 4129963 + gene protein_coding_gene FALSE TRUE AT3G12930.1 similar to Os09g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063546.1); similar to Protein Iojap (GB:Q41822); contains InterPro domain Iojap-related protein; (InterPro:IPR004394) -0.666211437571764 -3.77165486799819 0.00315020633731155 1 3.81929408930292 15.2636885971997 -0.666211437571764 0.258867290056823
AT2G26330_at 7.57046770284326 8.06221161917365 6.22041226440988 6.52252084026643 7.74715883522971 7.80163507466192 8.1264498720333 8.23914252869297 8.0171795641918 8.17943737608086 8.55381359933964 9.09578642886672 8.35439745480033 8.24155945009048 8.60323098244202 8.0383673935442 7.819151705784 8.46068590213176 8.51907387924972 0.177357552456450 0.166282648914617 0.183541954056229 0.178753617183829 0.167568674787341 0.17459737672762 0.171384155445460 0.171399403663664 0.183803196870666 0.167403216563542 0.171417902679007 0.163131581899051 0.171396185252922 0.172762454883133 0.171905978682334 0.165043806287628 0.174562199315319 0.167489093891693 0.165115148790569 2 2|0 -|/ 11215476 11215972 11215652.8 11215261 11221049 - gene protein_coding_gene FALSE TRUE AT2G26330.1 ER (ERECTA, QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. similar to ERL1 (ERECTA-LIKE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G62230.1); similar to ERL2 (ERECTA-LIKE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G07180.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26312.1); similar to putative receptor protein kinase [Sorghum bicolor] (GB:AAL68842.1); similar to putative transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD44800.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.384662834463188 -3.77092965887981 0.00315414753081872 1 3.81819727592926 15.8534687027301 -0.384662834463188 0.102197382465430
AT1G79270_at 7.2206418624473 6.98055654325533 9.07081087629197 8.57462475879488 8.41067209746462 8.08203876361391 9.2955798738088 9.04399967887271 6.65264930131859 8.22372585813338 7.86194343708565 7.22545683134798 8.58257749651976 7.98221025027483 6.13889762245529 8.91818007417987 9.56925765103193 7.25136099318678 7.68797825718263 0.194360940786384 0.196600128869928 0.182347708879858 0.189817641856806 0.182347708879858 0.182347708879858 0.182347708879858 0.186751388394557 0.209024381770952 0.187037923643281 0.195295561520018 0.19313460186649 0.186140890418964 0.194457004335208 0.201269678472439 0.185424378576351 0.182530469389977 0.20096820928308 0.187359896975659 1 1 + 29822869 29823617 29823172.545 29820399 29823997 + gene protein_coding_gene FALSE TRUE AT1G79270.1 ECT8 (evolutionarily conserved C-terminal region 8) similar to ECT6 (evolutionarily conserved C-terminal region 6) [Arabidopsis thaliana] (TAIR:AT3G17330.1); similar to rubisco subunit binding-protein beta subunit-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73484.1); similar to Os01g0679900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043869.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.409563270038692 3.77083012194012 0.00315468886869526 1 3.81804673024897 16.0662088985129 0.409563270038692 0.119286529087376
AT3G16175_at 1.21078158322234 1.7179215922886 1.81115679637232 1.83026656043072 1.58562129881370 1.80336044640165 3.28610995924291 3.06000864933697 2.50080925171195 2.65497339471968 2.58409953068445 2.17488503176168 2.21059232969369 2.64144228350578 2.32886477787546 2.94424622344692 2.24507967913419 2.43840197298608 2.81465114718879 0.162656750717429 0.162656750717429 0.162656750717429 0.171993022727604 0.168823010352628 0.164911072840619 0.163313997422937 0.164087590694832 0.166693803867238 0.164379925822650 0.165548737656312 0.163469886130514 0.166756497275386 0.169353207035356 0.165724773242433 0.168812374734344 0.17288086030287 0.171764562057451 0.176635078893475 3 3|0 +|/ 5480511 5481178 5480841.778 5480470 5481385 + gene protein_coding_gene FALSE TRUE AT3G16175.1 thioesterase family protein similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G29590.1); similar to Os04g0436100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052851.1); similar to novel protein similar to vertebrate thioesterase superfamily member 2 (THEM2) [Danio rerio] (GB:CAK05423.1); similar to Os01g0229500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042487.1); contains InterPro domain Thioesterase superfamily; (InterPro:IPR006683) -0.385981978211109 -3.76925549788191 0.00316326536790294 1 3.81566501203219 4.58953473235174 -0.385981978211109 0.103267144107748
AT1G22020_at 5.76402074894548 6.16948552525719 6.54465150804989 6.7506913581861 6.3437273135826 6.63113953611845 6.1326926112873 6.24048956482561 5.6996883249825 5.61706862211079 5.99561490708614 5.50058489309783 6.16888465240557 5.66584279001715 5.72561239579914 6.01380645888155 6.3346536543384 5.67897772921196 5.56435994754305 0.201136614482526 0.199588998836658 0.200708607215226 0.19786881874927 0.19772536061089 0.193648805965399 0.196094327243773 0.195411765802716 0.209800436891297 0.196698792983256 0.195258758892488 0.193648805965399 0.204529529917678 0.206564423512622 0.201566990754970 0.193648805965399 0.20162054691402 0.214626713758212 0.201718100865778 1 1 + 7755992 7757045 7756455.091 7754310 7757372 + gene protein_coding_gene FALSE TRUE AT1G22020.1 SHM6 (serine hydroxymethyltransferase 6); glycine hydroxymethyltransferase Encodes a putative serine hydroxymethyltransferase. similar to SHM7 (serine hydroxymethyltransferase 7), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT1G36370.1); similar to Os01g0874900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044960.1); similar to Os05g0429000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055615.1); similar to Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97575.2); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) 0.374669268315651 3.76923937152087 0.00316335332805739 1 3.81564061832129 12.0783803457733 0.374669268315651 0.0949564160656554
AT3G46010_at 11.1512820405932 11.259559749685 11.5745486723753 11.5384493748687 11.7047996084078 11.5002552675862 11.4791183521841 11.5556996112890 11.3566294381767 11.1827093770477 11.8251065536619 11.6323230841893 11.7765747436421 11.7447808134571 11.4468688576307 11.6600670190168 11.6047712604295 11.7679808475584 11.2384506359649 0.0790301627283977 0.0769970054384525 0.0804280152040142 0.0774745535163328 0.0781512015761225 0.081361266021083 0.0794164981261252 0.0774799785354895 0.0887526691751304 0.0814734484931207 0.0814935668589287 0.0790876957004621 0.0784568051919212 0.0772379007977046 0.0795236920799573 0.0785977312460738 0.079266319423923 0.0822586801067263 0.0810685709028756 3 3|0 -|/ 16920664 16921159 16920925.6 16920348 16921805 - gene protein_coding_gene FALSE TRUE AT3G46010.1|AT3G46010.2 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo. Identical to Actin-depolymerizing factor 1 (ADF-1) (AtADF1) (ADF1) [Arabidopsis Thaliana] (GB:Q39250); similar to ADF4 (ACTIN DEPOLYMERIZING FACTOR 4), actin binding [Arabidopsis thaliana] (TAIR:AT5G59890.1); similar to Actin-depolymerizing factor 1 (ADF 1) (GB:Q9FVI2); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.320572144711731 3.76891244522278 0.00316513707170233 1 3.81514608292035 22.941250233546 0.320572144711731 0.0426467573079327
AT3G13690_at 8.28617687261937 8.34215261820319 6.65910479458715 7.06168903689332 8.65214376744227 8.51536001930624 8.31947124285535 8.31025668397436 8.78282130080956 8.52932679765978 8.88073128781752 8.82195886100718 8.79138390517617 8.87620425132809 8.92226818204708 8.8754049272509 8.36974359926327 8.4577406226875 9.25459147680162 0.134871223425586 0.139454945876955 0.167252088569027 0.150204734351391 0.140537326473223 0.141782128797975 0.135831547814358 0.138366605511867 0.150566977556327 0.147726365395018 0.137461256568299 0.137025409014714 0.138417931961245 0.138068365812119 0.136121039552489 0.138347875468953 0.147284143798494 0.147559287911480 0.136838284779795 3 0|3 /|+ 4489358 4489874 4489565.444 4485799 4490238 + gene protein_coding_gene FALSE TRUE AT3G13690.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G55200.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56790.1); similar to Os01g0602800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043500.1); similar to dual-specific kinase DSK1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52649.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.34929517685363 -3.76834452813310 0.00316823816181944 1 3.81428697404888 16.8207990359831 -0.34929517685363 0.0742325959559984
AT1G11950_at 3.02945978015818 3.37004735555298 3.28882935005463 3.19466897514871 3.55377770367015 4.01026489301909 2.56914085831524 2.75716972900523 3.13011639669855 3.05185810227759 3.06323016634158 2.96228373729871 2.73968931091514 2.88542879879359 2.9346971491971 3.22760347008933 3.33640782381557 3.34533049657183 2.41457716126779 0.198163751542334 0.181898190478217 0.186032198093661 0.186586372089072 0.188125834697984 0.196440381579142 0.181301250073986 0.185202843674121 0.188005411049724 0.194569443517412 0.182595200162459 0.193582764354703 0.187163358207768 0.188448292480520 0.186681608792164 0.184229052078360 0.180501806650619 0.186139300712913 0.180501806650619 1 1|0 -|/ 4034750 4035526 4035119.6 4034585 4038308 - gene protein_coding_gene FALSE TRUE AT1G11950.1 transcription factor jumonji (jmjC) domain-containing protein similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to jmjC domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT81741.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347) 0.388373724380891 3.76794273941686 0.00317043401376382 1 3.8136791497616 6.18534537522011 0.388373724380891 0.105065915001711
AT3G03600_at 6.05095358241183 6.52935187438184 5.83803261995743 5.89310706533958 5.13342014018841 5.41289450519243 6.34053008682489 6.55641734181658 4.92070539165911 5.34410953360895 5.27207129361945 5.41897368780985 4.62682281452702 5.00967042308202 5.60132435372396 4.9817770443724 4.91183402452255 4.80918669623668 4.88792375500068 0.205779743617876 0.19492852525847 0.203912809661303 0.201023393170381 0.19492852525847 0.203318675123085 0.201165652313871 0.196772597837249 0.209059863578652 0.200480337714729 0.202781113135086 0.19492852525847 0.200005828024812 0.19492852525847 0.195525691930637 0.196406343372117 0.211825065133004 0.199929779780660 0.204372664134202 3 3 - 867919 868422 868133.091 867667 868585 - gene protein_coding_gene FALSE TRUE AT3G03600.1 RPS2 (RIBOSOMAL PROTEIN S2); structural constituent of ribosome Structural component of the mitochondrial ribosome small subunit Identical to Mitochondrial ribosomal protein S2 (RPS2) [Arabidopsis Thaliana] (GB:Q9GCB9;GB:Q8LGB5;GB:Q9SS62); similar to putative UDP-glucose pyrophosphorylase [Trifolium pratense] (GB:BAE71250.1); contains InterPro domain Ribosomal protein S2, bacterial and organelle form; (InterPro:IPR005706); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) -0.385952494937747 -3.76793321263806 0.00317048609854296 1 3.81366473745064 11.0342736198439 -0.385952494937747 0.103342957805483
AT1G33860_at 2.58873415663291 2.46389717704246 2.55780219115475 2.52378291510575 1.62263689610703 1.88196097876044 2.09736198991301 2.33079289465788 2.46474291002245 2.36953611455595 1.78090622380439 2.21981907136543 2.0115199057063 1.85095293258023 1.46521553211075 1.92668590426294 2.18481632510059 1.87533950014793 2.27057782903933 0.197143192403192 0.187067862019152 0.18992153320876 0.194535412952438 0.188685351284926 0.196523638567428 0.194165603871059 0.189247454902268 0.194132380072318 0.190018485492354 0.191136878359111 0.189513744580366 0.196088925509638 0.189389917565613 0.195907571799236 0.187057045180542 0.202295843669936 0.196132475722792 0.191605713683570 1 1 + 12294388 12295185 12294710.9 12294374 12295285 + gene protein_coding_gene FALSE TRUE AT1G33860.1 unknown protein -0.338764751383662 -3.76622843110887 0.00317982075137266 1 3.81108552934608 4.39971742105048 -0.338764751383662 0.0643987885279947
AT4G00860_at 10.8340395519137 10.8555989812297 11.1431395389323 11.2155468240961 10.8907512725529 10.8475449572087 10.8676214102867 11.0050108865362 10.6424204989646 10.6337426663979 11.1371271977539 11.2904875695728 11.0941900949978 10.9973515913132 11.0853691967201 11.1556689789095 11.0798405353611 10.9442029544137 10.5481601944212 0.0931093603141875 0.0947451190224017 0.095126067800479 0.0951922644057172 0.0940967064393673 0.0993758612212501 0.0928026603169745 0.0968152484257857 0.102692318656520 0.094193330517563 0.0974873078423527 0.0922815696331531 0.0933206897377418 0.0967086422661589 0.0956917969912363 0.0926769583578431 0.100484984410817 0.0947788308609193 0.0932571477302852 4 4|0 -|/ 359552 359837 359675.6 359315 360493 - gene protein_coding_gene FALSE TRUE AT4G00860.1 ATOZI1 (Arabidopsis thaliana ozone-induced protein 1) putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains. similar to ozone-responsive stress-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G01170.2); similar to Os06g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056609.1); similar to Os11g0161200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065822.1); similar to Protein of unknown function (DUF1138) [Oryza sativa (japonica cultivar-group)] (GB:AAX95468.1); contains InterPro domain Protein of unknown function DUF1138; (InterPro:IPR009515) 0.311799959495825 3.76530200042651 0.00318490541505909 1 3.80968375933836 21.8104754535819 0.311799959495825 0.0281448168509378
AT4G25835_at 3.46922183575017 3.80034635847718 3.22120460168011 2.67701806820223 2.71671710958993 3.06892175314993 2.64388950352451 2.93096679981937 3.29916647251765 3.21408951775161 2.90049229496202 2.82305671749897 2.75675537036345 2.80692107626611 2.46581488543498 1.96581788790976 2.45603425037406 2.7175028735639 3.05663298615706 0.246224248068790 0.248367642418557 0.24170466885760 0.2422171837801 0.234359338044234 0.244411151703427 0.234359338044234 0.241525990834411 0.238510223066244 0.23657670952517 0.234359338044234 0.234359338044234 0.236151209234599 0.238731072138952 0.24133015901844 0.235668130110789 0.246752947885544 0.234359338044234 0.242662277380545 4 4 + 13137057 13137556 13137272.182 13136116 13137868 + gene protein_coding_gene FALSE TRUE AT4G25835.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G30250.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G57480.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78645.1); similar to Os09g0432300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063240.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.434277156916352 -3.76475997209238 0.00318788420943153 1 3.80886357481061 5.96679195961856 -0.434277156916352 0.135408381678688
AT3G29360_at 8.70994597297143 8.576317433757 8.33398660257748 8.43493458041302 8.05538125641317 7.92173472432507 8.66554440767267 8.9815891631624 8.00655233300964 7.8882041372735 9.27168370280829 9.52169733842874 8.94418808458403 9.07404253510762 9.67519119861915 8.87004635999586 8.60823647016511 8.61570699017543 7.64088216929516 0.138151994395848 0.139621105793482 0.146354049502297 0.146969958657251 0.138101571262438 0.146237406239774 0.143077727490455 0.147390396643757 0.165535897174397 0.148394294103303 0.140222000275576 0.142885938192663 0.141792068442496 0.142769295600445 0.151935272060949 0.137690629488825 0.137740067388432 0.147420312859146 0.147238413285027 3 3 - 11268787 11269176 11268972.909 11268328 11270466 - gene protein_coding_gene FALSE TRUE AT3G29360.1|AT3G29360.2 UDP-glucose 6-dehydrogenase, putative|UDP-glucose 6-dehydrogenase similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G15490.1); similar to UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) (GB:Q96558); similar to UDP-glucose dehydrogenase [Cinnamomum osmophloeum] (GB:AAR84297.1); similar to putative UDP-glucose dehydrogenase 1 [Nicotiana tabacum] (GB:AAT40105.1); contains InterPro domain UDP-glucose/GDP-mannose dehydrogenase; (InterPro:IPR001732); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) 0.340273125833702 3.76431690865204 0.00319032127007094 1 3.80819311498135 16.918835250084 0.340273125833702 0.0660771483864949
AT1G04760_at 1.71113070891737 1.70155331700236 1.60388932844249 1.81556787852960 1.48845552314506 1.67161915877365 1.60025340190971 1.47292670786851 1.24207342472466 1.66600473166553 2.09236189153275 2.16078536103989 2.11539377587409 1.89054092808583 2.00405219962307 1.63061088642798 2.02235215159193 1.89487982392894 1.12136537446807 0.172799276037301 0.175345316448028 0.172522386861471 0.171095924296836 0.168098733789275 0.171588749072000 0.168505788692581 0.171515608427510 0.174375923276378 0.175003575609255 0.173080649220681 0.170433007397936 0.169554282099794 0.167978061969807 0.176633209526475 0.172426456769182 0.173183725174914 0.173879019364168 0.168301900347991 1 1|0 +|/ 1334826 1336043 1335552.4 1334759 1336069 + gene protein_coding_gene FALSE TRUE AT1G04760.1 ATVAMP726 (VESICLE-ASSOCIATED MEMBRANE PROTEIN) member of Synaptobrevin -like protein family Identical to Putative vesicle-associated membrane protein 726 (AtVAMP726) (VAMP726) [Arabidopsis Thaliana] (GB:Q9MAS5); similar to ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) [Arabidopsis thaliana] (TAIR:AT2G32670.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.328320610970927 3.76405955241778 0.00319173773765918 1 3.80780366309618 3.29293448851483 0.328320610970927 0.0532436470071473
AT1G67580_at 7.57083902149136 7.82711512119307 8.06016600913554 8.0752364074396 8.48046654578074 8.31749162914875 7.7663772394814 7.68109072292981 7.0343611229849 7.43315610976246 7.41712521626114 7.35761603573826 7.64762814178703 7.44113997924439 6.90070691765117 7.67338121597949 8.04517660107308 7.35795413333195 7.56180364575061 0.167364304787047 0.162910361129078 0.177533759593819 0.163892434000628 0.170627377040066 0.172546932177916 0.172578198586636 0.165933312165748 0.172097987503504 0.174454713838441 0.169973553127708 0.164803571913397 0.173757634952673 0.171875642754036 0.174940213386603 0.170749697340777 0.182708157077634 0.176202220493196 0.169327311703144 1 1 - 25331404 25332932 25332067.727 25330947 25335042 - gene protein_coding_gene FALSE TRUE AT1G67580.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G63370.1); similar to Os02g0602100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047355.1); similar to Os04g0488000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053147.1); similar to homolog of mammalian PITSLRE alpha protein kinase [Nicotiana tabacum] (GB:BAE96756.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.329484346118119 3.76359765746641 0.00319428160237736 1 3.80710466671264 15.3839468318914 0.329484346118119 0.0546532738066852
AT2G24100_at 4.7601639601867 5.78964021989372 5.10407042001951 4.95244052260936 5.09340626597721 5.51282480121872 5.14057149386986 4.78224220516694 4.13432126557006 4.10683682002226 3.35896588307185 3.33599819246286 2.89321294554888 3.09840002810142 1.66340535512266 3.63501455873633 3.2268010982375 3.36357439108234 4.45368057522187 0.252635302505698 0.242745496923281 0.242797324010599 0.257090171496516 0.246261255200253 0.248660259781387 0.245314252527761 0.251074469609098 0.253174974378030 0.256709990063193 0.246377345995579 0.249236106063132 0.247157124386234 0.249378478744976 0.248009782377093 0.244841784985057 0.248082589802052 0.251458470857454 0.24462821726906 2 2|0 +|/ 10253116 10253754 10253485.3 10251966 10253999 + gene protein_coding_gene FALSE TRUE AT2G24100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30780.1); similar to hypothetical protein MtrDRAFT_AC126784g9v2 [Medicago truncatula] (GB:ABE94678.1) -0.556080148857846 -3.76304739374725 0.00319731489341091 1 3.80627190583916 8.79368720785953 -0.556080148857846 0.203817313728915
AT3G14230_at 9.4183962660223 9.44414008955616 9.65401972804557 9.63984265628673 10.1103013586523 9.8485572063726 9.57967428327374 9.42761414725463 8.1169765242328 8.37252282408566 8.45376503904456 8.16378077477617 8.64953838175173 8.3508652301742 8.39493057457726 8.6815314980851 9.11221214833392 8.68938533215781 8.26757332406727 0.140882915917195 0.136970892278998 0.135878719038676 0.145773691301372 0.134613355947749 0.138940236529851 0.134613355947749 0.137495220115994 0.152934857951203 0.140908858846444 0.141007311854510 0.146669998995126 0.144310724624835 0.147473637844432 0.137696863764970 0.135863493473293 0.139774848027656 0.140378312441513 0.146863840851908 3 3 - 4737704 4738184 4737949 4737153 4739148 - gene protein_coding_gene FALSE TRUE AT3G14230.1|AT3G14230.2|AT3G14230.3 RAP2.2; DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. similar to RAP2.12, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53910.2); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.327683802856635 3.76265587575465 0.00319947492469376 1 3.80567936588611 18.0474975568453 0.327683802856635 0.0526313889227037
AT2G46510_at 4.50873953205425 5.58278467524519 3.44222024221295 4.48091048993867 4.67060328378637 4.39516791716041 4.66824092529597 5.1405294029438 4.98364629434902 5.04912971214358 4.47652643623362 4.54736193175893 4.57188885167367 4.431949160838 4.0991256825081 4.79809023346438 3.8830741712194 4.11800178724039 5.06850359188322 0.242208880698324 0.231087442835332 0.241112526002429 0.225959677514374 0.226828022254624 0.236610495004594 0.227844316167596 0.225959677514374 0.23282124157958 0.240393140510983 0.230918984087369 0.232952351283212 0.225959677514374 0.229808275919496 0.229667293489237 0.225959677514374 0.235820570872001 0.236640645278326 0.233368580574601 2 2 - 19098268 19098762 19098489.818 19098025 19100387 - gene protein_coding_gene FALSE TRUE AT2G46510.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G01260.2); similar to Os01g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042524.1); similar to bHLH protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81265.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.697927867434207 -3.76110164282716 0.00320806464311174 1 3.80332693948931 9.31090563257587 -0.697927867434207 0.275334889119228
AT3G21860_at 1.96877778552832 2.02063598551738 2.00787081473247 2.13220907147985 1.66501693342199 1.77791895100185 1.86934335192662 2.05842177728779 3.06838006934368 2.18826217033882 1.95808267616249 1.81459475993772 1.9474826773849 1.82969981670215 1.74076062054172 1.77166605682432 1.74312071237085 2.33973806999951 2.09973358636711 0.179211419265507 0.186829642726409 0.174215212283900 0.179191472483536 0.190182818078938 0.176461399897749 0.194579782121738 0.186835907622003 0.175326344932363 0.183531717904194 0.177546729823849 0.178353429861182 0.182798335678725 0.180718309672886 0.184062062362687 0.176069320360911 0.180775892764655 0.174215212283900 0.184211249563406 3 3 - 7699798 7700127 7699968.727 7699784 7700242 - gene protein_coding_gene FALSE TRUE AT3G21860.1 ASK10 (ARABIDOPSIS SKP1-LIKE 10); ubiquitin-protein ligase similar to ASK9 (ARABIDOPSIS SKP1-LIKE 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G21850.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) -0.321261442007700 -3.76012770524572 0.00321345942730983 1 3.80185267557841 4.1101585584072 -0.321261442007700 0.0446758610233169
AT1G37150_at 1.90868475878506 2.37666654901403 2.74742429002698 2.64000272818724 3.34188831599731 3.01520056398082 2.1388988153671 2.52163180856794 2.13071483951824 2.43547288529973 2.28881166133055 2.38853354500504 2.70429286891934 2.48839149243746 2.63662815013633 2.45157389315231 2.50590627153591 2.19894809719508 2.44700821202402 0.226984602091446 0.233471904368727 0.228062860712044 0.22679668459406 0.226865144480909 0.231177343591896 0.214814013438665 0.214814013438665 0.218540891407776 0.222893585745996 0.218311928060991 0.224141681937106 0.21734470077744 0.219631008418926 0.227611960706615 0.219152454008449 0.215025423681975 0.220424339939065 0.219157043960289 1 1|0 -|/ 14177456 14179139 14178232.75 14177422 14180433 - gene protein_coding_gene FALSE TRUE AT1G37150.1|AT1G37150.2|AT1G37150.3|AT1G37150.4 holocarboxylase synthetase 2 (HCS2.d) similar to HCS1 (HOLOCARBOXYLASE SYNTHASE), catalytic [Arabidopsis thaliana] (TAIR:AT2G25710.2); similar to Os02g0167000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046003.1); similar to putative holocarboxylase synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD26236.1); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143); contains InterPro domain Biotin--acetyl-CoA-carboxylase ligase; (InterPro:IPR004408)|similar to HCS1 (HOLOCARBOXYLASE SYNTHASE), catalytic [Arabidopsis thaliana] (TAIR:AT2G25710.2); similar to Os02g0167000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046003.1); similar to putative holocarboxylase synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD26236.1); contains InterPro domain Biotin protein ligase, C-terminal; (InterPro:IPR003142); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143); contains InterPro domain Biotin--acetyl-CoA-carboxylase ligase; (InterPro:IPR004408) 0.409906130065616 3.75889517699227 0.0032203000461282 1 3.79998681365415 4.98410859194647 0.409906130065616 0.120363938812980
AT1G17870_at 2.16820260466362 2.39307999505800 3.46581444514316 2.90270208946049 3.01829727738340 2.77350380786131 5.62568541140929 4.87847654681486 3.90658909305883 3.93839532309765 3.98718793441033 3.29381617157612 4.15415889367877 3.93813129092244 3.36818575378111 3.38993508226249 3.96940721542863 3.81020212129268 4.16791964053738 0.238564067321075 0.237436164377003 0.265328151130198 0.241807970860833 0.236900703988838 0.242745378543187 0.251524482199416 0.25477691710682 0.268927961334071 0.241000978494051 0.239453674609772 0.235272481587693 0.244129258523543 0.242390747837318 0.240631825040898 0.235202468171999 0.2558507161985 0.238757512185249 0.235202468171999 1 1|0 -|/ 6150043 6150569 6150242.1 6149932 6152215 - gene protein_coding_gene FALSE TRUE AT1G17870.1 S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442?454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171?179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. similar to EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1), sterol regulatory element-binding protein site 2 protease [Arabidopsis thaliana] (TAIR:AT5G35220.1); similar to Os03g0729000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051151.1); similar to hypothetical protein CYB_1255 [Synechococcus sp. JA-2-3B'a(2-13)] (GB:YP_477493.1) -0.495852514418286 -3.75687862106116 0.00323152459172154 1 3.7969336539174 7.27480997729944 -0.495852514418286 0.171831194437707
AT1G26880_at 9.94820851754543 10.1239155144501 9.73716507930131 9.93750951278186 9.62370324435518 9.43884815245882 10.3025105783006 10.5011017781644 9.67010906614465 9.78610544928682 9.75893503142039 10.162429448981 9.58324689972428 9.38924087429342 10.2081770613611 9.35321192444425 8.77491065465396 9.42995664903131 9.7226787228362 0.119507684424536 0.114901545342402 0.118413298587999 0.122743923276607 0.112788578598631 0.123317841528244 0.119164597187103 0.115455730584943 0.140865534380850 0.113594028266145 0.116573094395033 0.112788578598631 0.112788578598631 0.137972047642378 0.117067769951348 0.118875718663016 0.138713006832978 0.126747594961176 0.118799939550010 1 1|0 -|/ 9315630 9316599 9316026.125 9315370 9316716 - gene protein_coding_gene FALSE TRUE AT1G26880.1|AT1G26880.2 60S ribosomal protein L34 (RPL34A) Identical to 60S ribosomal protein L34-1 (RPL34A) [Arabidopsis Thaliana] (GB:Q42351;GB:Q8L9D3); similar to RPL34 (RIBOSOMAL PROTEIN L34), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69620.1); similar to 60S ribosomal protein L34 (GB:P41098); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195)|similar to RPL34 (RIBOSOMAL PROTEIN L34), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69620.1); similar to 60S ribosomal protein L34 (GB:P41098); similar to 60S ribosomal protein L34 (GB:P40590); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.339205888995673 -3.75547681802709 0.00323935115174495 1 3.79481096792211 19.6060259542087 -0.339205888995673 0.0658110096022498
AT1G50410_at 6.9544534490256 7.19403920338403 7.21058853406376 7.31043452275326 7.10125431574637 6.81883337123488 6.53251396376877 6.5317363536773 6.03585821377733 6.36353868200445 6.51677407067219 6.77729877450373 6.40130764750819 6.44926687196346 6.12929097028314 7.00937372102469 6.70684578807922 6.64364364134001 6.2214914245011 0.169121822011917 0.167269779850570 0.161181486167055 0.163561084760187 0.159026817525673 0.162954344457397 0.169875769169729 0.161919104682775 0.173378031164028 0.165414109852888 0.165463774243300 0.161679703855971 0.166916707553583 0.172992918612983 0.171272082190558 0.159026817525673 0.159026817525673 0.159026817525673 0.183749810318109 1 1 + 18680264 18680938 18680546.273 18675831 18681224 + gene protein_coding_gene FALSE TRUE AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to EDA16 (embryo sac development arrest 16), ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G61140.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G11100.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20010.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD52846.1); similar to H0323C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68165.1); similar to Os08g0180300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061138.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.339677177864922 3.75433666971021 0.00324573130322562 1 3.79308431797801 13.3498256937565 0.339677177864922 0.0663801124411884
AT3G18110_at 5.29324091534437 5.78521587939909 4.79021758857713 4.58546061273763 5.50293515868567 5.52892633837674 6.05712305945213 5.71536057383658 5.34524111847631 5.76988163673824 5.05929777273846 5.95130129126279 5.50218893205958 5.19374106661852 5.79007251040085 5.50184714260148 5.33908940523532 5.38673671552044 5.80949043094146 0.207802517967291 0.191919986251523 0.205881036070324 0.214395940617095 0.193136014808674 0.197246235489202 0.191919986251523 0.197426340792943 0.2086035937405 0.19515883024286 0.193107812206572 0.198763773664904 0.19419282545016 0.199321008884173 0.207650540080313 0.194558606884464 0.211215171479846 0.193935729571009 0.194521555328148 3 3 - 6205082 6205822 6205323.455 6204810 6209697 - gene protein_coding_gene FALSE TRUE AT3G18110.1 EMB1270 (EMBRYO DEFECTIVE 1270); binding similar to PGR3 (PROTON GRADIENT REGULATION 3), binding [Arabidopsis thaliana] (TAIR:AT4G31850.1); similar to Os06g0199100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057065.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47632.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.393426778288868 -3.75363170981415 0.00324968269010167 1 3.79201664216422 10.9608460574378 -0.393426778288868 0.109646473900278
AT4G04350_at 7.70217016507045 7.82091208690684 7.22847453806558 7.0764885680109 7.64780519679673 7.49113156930175 7.80399506561941 7.76212240473308 7.24497425312204 7.6407321359163 7.32083002323293 7.54202866146802 7.04617318413673 7.14723978614647 7.71834727696135 7.84112490804108 7.44654011836046 7.1120288566144 7.98980692904037 0.20564808554679 0.186438035001302 0.190159941963755 0.189710894864752 0.188382706663992 0.188671980688142 0.187028833995925 0.194580153522472 0.19797474710638 0.182081955583250 0.189764903544445 0.179151881892697 0.194112860668903 0.197286991467812 0.199853367222951 0.184233691212342 0.194529919423369 0.183550909058016 0.179151881892697 4 4 + 2132189 2132975 2132611.545 2128088 2133127 + gene protein_coding_gene FALSE TRUE AT4G04350.1 EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase similar to OVA2 (OVULE ABORTION 2), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G49030.2); similar to Isoleucyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL53315.1); similar to leucyl-tRNA synthetase [Treponema denticola ATCC 35405] (GB:NP_972938.1); similar to leucyl-tRNA synthetase [Salinibacter ruber DSM 13855] (GB:YP_445066.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain ValRS-IleRS-LeuRS editing; (InterPro:IPR009008); contains InterPro domain Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia; (InterPro:IPR002302) -0.31985348334738 -3.7525655432729 0.00325566814425041 1 3.79040179741313 15.0776175532613 -0.31985348334738 0.0436081698175007
AT2G10370_at 0.812744474816301 0.880868689016895 1.07886293770770 0.943748583860163 0.689679604777391 0.956289956157344 1.24271607336558 1.29245459336856 1.87333926770689 1.72966944283643 1.04252977019015 1.15481768472716 0.495124191457743 0.97671578824172 1.57722564381464 0.882787886541808 1.51393072687458 1.28141577927269 1.28875139428916 0.192838577687259 0.192838577687259 0.199621090965198 0.196766023168800 0.192838577687259 0.192838577687259 0.195311129515535 0.201657153730381 0.192838577687259 0.197880035269076 0.206315173616611 0.200969893230618 0.208935186759654 0.194000596455373 0.192838577687259 0.195633841317526 0.204039377071473 0.196737910061542 0.204748762711395 2 2 + 4004117 4004662 4004419.778 4003719 4004733 + gene protein_coding_gene FALSE TRUE AT2G10370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.327534477368475 -3.75018984069881 0.00326904639342167 1 3.78680299959998 2.36024818188418 -0.327534477368475 0.0537450498114854
AT3G54110_at 8.01600105734891 8.03124550949792 7.71105241195948 7.82837365703247 7.89482358269486 7.51354404317083 8.0140464692298 8.06397516170145 7.1067764449219 6.96303462856338 7.86291781393757 8.0647759671647 7.51865804002481 7.81438574220372 8.14799596965405 7.70174352609595 7.99084977920474 7.85806572578997 6.60128187526338 0.157419105110149 0.144645396908651 0.148587420999656 0.146155267927011 0.146303496147187 0.144874121675640 0.148589651697987 0.150127991719109 0.166311005793181 0.150140071579844 0.148545984156570 0.146850044584425 0.144645396908651 0.148649037004357 0.144645396908651 0.144720817074645 0.148498000395017 0.148806628391562 0.153297305740742 3 3|0 +|/ 20050981 20051799 20051402.222 20049658 20052188 + gene protein_coding_gene FALSE TRUE AT3G54110.1 ATPUMP1/UCP1 (UNCOUPLING PROTEIN 1); binding / oxidative phosphorylation uncoupler Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate. similar to ATUCP2 (UNCOUPLING PROTEIN 2), oxidative phosphorylation uncoupler [Arabidopsis thaliana] (TAIR:AT5G58970.1); similar to mitochondrial uncoupling protein [Solanum tuberosum] (GB:CAA72107.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) 0.342595564264893 3.74963204287581 0.00327219574755747 1 3.78595792903425 15.2642769299590 0.342595564264893 0.069623835619592
AT3G18450_at 0.651226010094608 0.833902115957826 0.678394696205201 0.682429194797215 0.554833635857804 0.552556590681605 0.78031682349022 1.38065559219070 1.01702713042515 1.11011153707147 0.595989714705847 0.318001976931858 0.662229193816521 0.595761588829182 0.840100564256271 0.553925851136178 0.831494361765766 0.902387203559214 1.32556447523134 0.188853113391814 0.190251823851813 0.192366887831954 0.190025145998296 0.193538385936417 0.191897205920175 0.193452812313255 0.192271165706921 0.189607854894645 0.201362250324721 0.189844867812543 0.188853113391814 0.196014011069285 0.193542315324966 0.201713691478944 0.195630468956980 0.188853113391814 0.190914670591553 0.198607979170883 3 3|0 -|/ 6331249 6332099 6331795.333 6331040 6332224 - gene protein_coding_gene FALSE TRUE AT3G18450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18460.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to ORFX [Lycopersicon pennellii] (GB:AAF74287.1); similar to Os02g0580000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047232.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) -0.391443173374381 -3.74909230905789 0.0032752460999566 1 3.78514018992237 1.67098300963494 -0.391443173374381 0.108597649248646
AT2G20830_at 6.6070037501434 6.45449149037143 6.66041198945453 6.3243101453605 7.27927717056565 7.04010943081361 7.40925738932713 7.70761695830625 6.98781922770345 7.15446617470762 6.51853148931391 6.0909740384782 6.40578371700746 6.90278604267042 6.70862106696846 6.99423504287177 6.83852709831813 6.57359671235376 7.30202505230461 0.176952985610906 0.174836700114671 0.176744518637638 0.171915666403629 0.182775043022813 0.182138036300286 0.178579412476203 0.188050589539361 0.174204442510854 0.171915666403629 0.174415524301323 0.174639964685773 0.173580423031106 0.185737531524655 0.172063115358939 0.174674376539218 0.180021168674885 0.177715308804983 0.173930797380198 2 2|0 -|/ 8975488 8976516 8975795.333 8975292 8977711 - gene protein_coding_gene FALSE TRUE AT2G20830.1|AT2G20830.2 folic acid binding / transferase similar to formiminotransferase-cyclodeaminase-like [Oryza sativa (japonica cultivar-group)] (GB:BAA83349.1); contains InterPro domain Formiminotransferase, N-terminal; (InterPro:IPR012886)|similar to formiminotransferase-cyclodeaminase-like [Oryza sativa (japonica cultivar-group)] (GB:BAA83349.1); contains InterPro domain Protein of unknown function DUF1715, eukaryotic; (InterPro:IPR013179); contains InterPro domain Formiminotransferase, N-terminal; (InterPro:IPR012886) -0.368768398447973 -3.74900238993672 0.00327575457149735 1 3.78500395197923 13.8239274834943 -0.368768398447973 0.0919707113411044
AT3G56860_at 9.56654288137723 9.55876459698951 9.90652686317551 9.803182303708 10.2708486596716 9.90283526043052 9.74613329312175 9.61985177506804 9.03891081564737 8.90491057267754 9.24468925070125 9.24575219229061 9.48979032202244 9.33961288530947 9.3090398505174 9.56290354243432 9.16891151903734 9.21703930892588 9.01137459073569 0.102394521670732 0.102123856967569 0.104362369219685 0.106509250456909 0.10162352166418 0.104746370688919 0.106464815458762 0.107359735134437 0.107034135728506 0.108786316702376 0.103601835429348 0.104398802116010 0.102925186998022 0.104002255191882 0.106868424161856 0.101100321771409 0.116881993360471 0.108625779214548 0.105643614786336 3 3 - 21061689 21062147 21061926.091 21059864 21063216 - gene protein_coding_gene FALSE TRUE AT3G56860.1|AT3G56860.2|AT3G56860.3 UBA2A; RNA binding|UBA2A; AU-specific RNA binding / RNA binding encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.2); similar to RNA-binding re (GB:ABD28657.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.342588583829298 3.74891829125223 0.00327623020375089 1 3.78487653179326 18.9504770468220 0.342588583829298 0.0696792700723048
AT1G74210_at 9.05536585657575 9.11377082555464 8.96946932141892 8.9712516067473 8.65193915774448 8.49909236766779 8.66463067676791 8.48868204269333 7.993147425431 8.12417769500684 6.97801248331496 6.96042223729392 7.55953186858612 7.54640326643692 6.60741475013467 7.57495249873593 7.59877075595867 7.4318704491519 7.46494332931209 0.182881748485627 0.178736032356069 0.179032797474646 0.178736032356069 0.178736032356069 0.185684760381778 0.179143864340752 0.178905931853231 0.186059527997848 0.183216884956921 0.191015558851797 0.195735307115452 0.19017888059994 0.185994753268554 0.191637326022461 0.178736032356069 0.190068325313200 0.186550244562684 0.193809482184336 1 1|0 +|/ 27915757 27916419 27916107 27913975 27916602 + gene protein_coding_gene FALSE TRUE AT1G74210.1 glycerophosphoryl diester phosphodiesterase family protein similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G08030.1); similar to glycerophosphodiester phosphodiesterase-like protein [Manihot esculenta] (GB:AAV74406.1); similar to Os01g0763600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044335.1); similar to Os03g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050628.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) -0.318129049109144 -3.74874428200823 0.0032772145650526 1 3.78461288298485 16.3732394512054 -0.318129049109144 0.0415815391898544
AT2G31510_at 9.37769338726656 9.4794533648097 9.92733632496012 9.7514059125542 10.1123332517475 9.87212220340795 9.33183621220414 9.120186611445 9.04364918750252 9.25814865208014 9.43171608587257 9.37925333642062 9.50717670404727 9.43007900083028 8.91848268718332 9.4049542076268 9.22312936161104 9.16407589681644 9.3560159098797 0.137168888242369 0.136249577833139 0.136293125469246 0.141234011766744 0.135686126397804 0.135576498523175 0.130729188779130 0.137645463087948 0.155761386552653 0.143132288678223 0.140291529248936 0.136729839792407 0.138517238029732 0.137916261440761 0.139815017495624 0.136202904256430 0.158713658868427 0.151642938192908 0.141324151037012 2 2 - 13423920 13424803 13424231.222 13423723 13428247 - gene protein_coding_gene FALSE TRUE AT2G31510.1 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G65430.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G05890.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); similar to ARIADNE-like protein [Musa acuminata] (GB:AAR96008.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.338297094733173 3.74748210150138 0.00328436382112349 1 3.78270039035759 18.8848607384853 0.338297094733173 0.0656248075250183
AT1G52140_at 4.69331988876205 5.20851997823164 3.71964319578181 3.84352346353152 4.66774949739135 4.68854102973345 3.99589534444136 5.02166984737487 3.97750948084503 3.59077300000104 5.2149551921648 5.94935063102775 5.44060003644011 4.94603517671051 5.33521114395224 5.49927786363456 5.29853967179619 5.40761823950932 3.81383744920643 0.258198760384695 0.257817694164367 0.255813853553123 0.260552087763374 0.252397036493572 0.275171438047538 0.259331430608252 0.253754286274986 0.261813442078457 0.258428028994764 0.264349134111601 0.256118663030191 0.253540089764716 0.265127279891096 0.260575130754565 0.252805022536726 0.279205486712548 0.254585484884124 0.262516718973043 1 1 - 19411371 19411796 19411585.818 19411033 19411923 - gene protein_coding_gene FALSE TRUE AT1G52140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16330.1); similar to Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum] (GB:AAG43551.1); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080) 0.54621077481366 3.74733532727623 0.00328519622792021 1 3.78247798132382 9.07010201620031 0.54621077481366 0.199833037884309
AT3G15940_at 4.91880569814303 5.00571810395304 3.87928885397285 4.21258276308058 3.81720021746118 4.24804156453208 5.01259444708412 5.61010456895509 4.79400675221451 4.85093912969482 5.18239322126083 5.62194327447148 5.65819863148816 5.3108680874769 5.34856716600906 4.61959990926033 4.92525400621369 5.27317172582681 5.43549569988005 0.26217777757616 0.257863227805944 0.270262711520684 0.259978921819198 0.256117407740872 0.261737166869839 0.257090218911514 0.258958014553041 0.266551989590269 0.265529873497647 0.256117407740872 0.260566572704514 0.256117407740872 0.259793794986603 0.256117407740872 0.256117407740872 0.261660569418168 0.270152546079062 0.259734212799365 3 3|0 -|/ 5393735 5394384 5394157.8 5393519 5396765 - gene protein_coding_gene FALSE TRUE AT3G15940.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G52420.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus ATCC 33223] (GB:ZP_00777833.1); similar to Glycosyl transferase, group 1 [Roseiflexus sp. RS-1] (GB:ZP_01355979.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.44092085630885 -3.74709763865935 0.00328654470429221 1 3.78211780293987 9.72269870882143 -0.44092085630885 0.140726665976598
AT1G53760_at 2.88675026362082 3.07009827393053 3.45459951119405 3.01773319402890 3.43998655117792 3.29951162754050 2.26367166080644 2.91188516127033 2.760497568045 2.13172948935537 2.95359396807720 2.83262736309392 2.57239344181569 2.75240911599724 2.79213769462546 2.6679708705274 2.46796056090660 2.1822231283107 1.97665602573619 0.186957321298985 0.191094873763455 0.201305410350721 0.192103826119961 0.197193653238758 0.196429278434177 0.186957321298985 0.190983968763757 0.192588946798602 0.191372117493821 0.186957321298985 0.195271750072013 0.191860122620673 0.188682473127207 0.196188863793914 0.189945716076946 0.195167522710309 0.186957321298985 0.194747951564696 1 1|0 -|/ 20073273 20073870 20073520.857 20072659 20074764 - gene protein_coding_gene FALSE TRUE AT1G53760.1 similar to hypothetical protein MtrDRAFT_AC135796g15v1 [Medicago truncatula] (GB:ABE82080.1) 0.441446602309367 3.74694859868453 0.00328739054335574 1 3.78189195366375 5.51417563659525 0.441446602309367 0.141056284113848
AT3G54200_at 7.8145066049318 8.70330589241545 8.56466731342632 8.83811413704194 9.51095818176648 9.3730520496421 9.12327022374329 9.31075699191485 9.4456019308098 8.74274336385603 10.0584996503854 9.43143648596868 9.70992781280383 9.93468050805143 9.55649991432457 8.93808997141987 8.99682246922139 9.60307715726775 8.49560941044032 0.134024793626344 0.125620326841067 0.131196121076010 0.120374506976539 0.120374506976539 0.134413710998444 0.124258352470841 0.126106427269196 0.140714846107289 0.132459431392921 0.122280630861729 0.121931334818355 0.122235199711997 0.125201151009097 0.128978477921272 0.123132585614722 0.127461861152900 0.130281185663940 0.127410317916539 3 3 + 20076865 20077346 20077100.909 20076643 20077538 + gene protein_coding_gene FALSE TRUE AT3G54200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05975.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE93043.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.483857835014759 3.74617303165786 0.00329179571672257 1 3.78071664694455 18.1164693316348 0.483857835014759 0.165889547963045
AT4G22330_at 5.11033469944315 5.60858677093431 4.04701281629035 4.55065213577066 5.52147483615494 5.35543963317103 3.79189212605334 4.60997054200597 3.60172132178191 3.42019783733627 4.60762173101424 4.57970564129505 4.64400929155101 4.63884710179067 4.90016499121168 4.91883935205217 4.60696708312194 3.84054149147796 3.85998939697655 0.309509500554097 0.305325148229824 0.319981305640069 0.313520506145732 0.305325148229824 0.321814208019363 0.310244053025508 0.313738933010050 0.33198323369173 0.312612776675066 0.312383342742436 0.311704631066203 0.305325148229824 0.314425512226804 0.319055784412459 0.305325148229824 0.313785528258551 0.306906510889573 0.312764836308702 4 4 + 11798671 11799518 11799213.818 11797579 11799868 + gene protein_coding_gene FALSE TRUE AT4G22330.1 ATCES1 (ATCES1); catalytic Encodes AtCES1 for Acyl-CoA independent ceramide synthase. similar to Alkaline phytoceramidase [Medicago truncatula] (GB:ABD28483.1); contains InterPro domain Alkaline phytoceramidase; (InterPro:IPR008901) 0.526616527072659 3.74599902635414 0.0032927848947817 1 3.78045294657333 8.93411541371342 0.526616527072659 0.189471360610119
AT3G11420_at 5.21550218451471 6.05393794374382 4.41193873523862 4.60122664268894 5.8128563350596 4.97533265790337 4.45870600130002 4.79770199104554 2.79007297792008 3.06923504216489 3.90877671997816 4.52662630504466 4.83146716812781 5.23988609468014 3.616003048245 4.10386913119612 4.74205104647431 3.85865846376028 3.20017309432547 0.264111509820590 0.255763557722141 0.260701135751208 0.254054746239721 0.247114881712498 0.268648546152857 0.254962910429201 0.253065211644855 0.258181956121392 0.244030511463969 0.244030511463969 0.244030511463969 0.261180376962757 0.257965967409933 0.24746718839276 0.244030511463969 0.253458730264193 0.246363981033708 0.256752601489602 3 3 + 3593644 3593947 3593796.091 3591481 3594576 + gene protein_coding_gene FALSE TRUE AT3G11420.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT2G37730.1); similar to Os03g0269900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049681.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) 0.576233385811553 3.7440541787684 0.00330386183317011 1 3.77750533447287 8.72752245409939 0.576233385811553 0.215810241619261
AT1G67300_at 6.58335079326643 6.81399889173067 6.95669784480584 6.79910366053061 7.20868191448252 6.42506576245743 6.84933514747689 6.60478865587966 5.23356138412722 6.17864626916041 6.86461582363432 6.9488047088791 6.55954103021614 6.57261207435463 5.88976391605926 6.57543110257545 6.42239835191939 6.5545114746613 5.89983756620214 0.265799595778526 0.25733751075901 0.267796793856255 0.258174828720529 0.265933803736584 0.265319496931282 0.283188591991555 0.253593050504343 0.269846565165969 0.260117555666328 0.271965424599948 0.263291793674934 0.258342130500765 0.284556799931393 0.255260020844047 0.262250387127944 0.265126332390098 0.266078946199378 0.263429000900583 1 1|0 -|/ 25197497 25198365 25197858.6 25197367 25200752 - gene protein_coding_gene FALSE TRUE AT1G67300.1|AT1G67300.2 hexose transporter, putative Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medicago truncatula] (GB:ABE93220.1); similar to putative sugar transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD21807.1); similar to sugar transporter [Citrus unshiu] (GB:AAN86062.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medicago truncatula] (GB:ABE93220.1); similar to sugar transporter [Citrus unshiu] (GB:AAN86062.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.456148496969107 3.74398615192535 0.00330424997918926 1 3.7774022247239 12.9396986088874 0.456148496969107 0.150058625035534
AT2G21220_at 1.22579353352001 1.31507043887583 1.24535268624306 1.39196304263036 1.29579448100879 1.51508854843362 1.13113751527568 0.94222706373677 3.21716034887480 1.37587477224387 3.49399822525327 2.29834832200876 1.76423426279703 2.53767306211732 2.59813571352711 3.09193719326712 2.15515518078008 2.75812842194827 1.80921502695175 0.240965013521201 0.24594658452829 0.248508505161638 0.236433198461585 0.240210948335197 0.243638745241279 0.235852715457014 0.236435538707001 0.253869153153276 0.246468408964388 0.240719988708298 0.237387827646467 0.234853275212254 0.244000866105942 0.242900096610156 0.255635498975536 0.253885304957192 0.246887438318674 0.235042298700337 2 2 + 9096474 9096746 9096603.818 9096407 9096894 + gene protein_coding_gene FALSE TRUE AT2G21220.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G38860.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.330805233374558 3.74256445949743 0.00331237264389712 1 3.77524720780415 3.61844575391677 0.330805233374558 0.0582354037750165
AT4G35750_at 10.2335857214963 10.3752321425438 10.3123854926142 10.5300797140627 11.0857930625604 10.8090193828516 9.47403604800261 9.60669713605465 9.01597288745934 9.0906623940205 8.53876262705557 8.901726914377 9.42593597797929 9.01663391054789 8.14484272337978 9.46801283428095 9.06324508528782 8.68201709131026 8.84427610547303 0.161757667083083 0.163619297659662 0.167818238443602 0.164292249367751 0.173271415812256 0.162961532759629 0.166083416955398 0.165407279877652 0.167492976751493 0.16616660901904 0.161730226344196 0.161029666277726 0.157649701322896 0.173175607346526 0.17189866846286 0.162503404983107 0.167242616507932 0.163456192495125 0.163235980469571 4 4|0 -|/ 16940893 16941576 16941255 16940512 16941867 - gene protein_coding_gene FALSE TRUE AT4G35750.1 Rho-GTPase-activating protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10210.1); similar to OSJNBa0084K11.12 [Oryza sativa (japonica cultivar-group)] (GB:CAD41068.2); similar to Cellular retinaldehyde-binding/triple function, C-terminal [Medicago truncatula] (GB:ABD28324.1); similar to Os04g0561200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053551.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.341720833770457 3.74056770282245 0.00332381576205467 1 3.77222009287299 19.2477457247791 0.341720833770457 0.0695794068659415
AT4G31980_at 4.79608822164671 4.87480359514875 3.22121227990721 2.88331028206356 3.53161896188026 3.699676824996 3.02885153671723 2.93056370216216 2.91144870781751 3.08175264480710 3.23571735709563 3.26372140245328 2.62645933167724 2.83680040364478 3.09236056529223 2.69405008237524 2.76021225781564 3.15071063001226 3.20393879412049 0.248626408736474 0.263389102761811 0.240725887025791 0.236646194628341 0.242152908031924 0.245258870797131 0.236646194628341 0.236646194628341 0.25866147196024 0.241505876950427 0.240167971979057 0.239044505752743 0.253122579204432 0.249471909575671 0.252254679680562 0.236646194628341 0.252889124783009 0.247293708984246 0.236646194628341 4 4 + 15468614 15469179 15468934.909 15464911 15469210 + gene protein_coding_gene FALSE TRUE AT4G31980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11290.1); similar to Plant protein of unknown function [Medicago truncatula] (GB:ABE78528.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.34091577757977 -3.74010079813048 0.00332649741838834 1 3.77151218901225 6.63237436858731 -0.34091577757977 0.0688483172076301
AT1G21065_at 11.6810728856207 11.5973169955823 12.0230512825394 12.0036688198587 12.1320380629885 12.0148664313143 12.1828966911315 11.9750123865907 11.5117826203541 11.7849205621211 12.1784726972727 12.0528062232960 12.0759795647909 12.014880596497 11.9489034186838 12.3902713497537 12.2938333201273 12.0142421522288 11.7065713769535 0.0777984932014162 0.0770407213321204 0.0798355596577282 0.0785035409179227 0.0778519537953011 0.086894454496405 0.0780652947220449 0.0755791048522921 0.0899582215007369 0.0787393950159899 0.0755791048522921 0.0755791048522921 0.0776749830280327 0.0778777766204013 0.078727606037552 0.0755791048522921 0.0856789103468723 0.0821117885965208 0.0820295993639354 1 1|0 +|/ 7374344 7375570 7374653.333 7374199 7375778 + gene protein_coding_gene FALSE TRUE AT1G21065.1 similar to Protein of unknown function UPF0047 [Medicago truncatula] (GB:ABC75362.1); contains InterPro domain Protein of unknown function UPF0047; (InterPro:IPR001602) 0.318873444149488 3.73869885695808 0.00333456289224471 1 3.76938646016488 23.845706370357 0.318873444149488 0.0438944564431161
AT1G49650_at 5.67461824305234 6.25160732365824 3.32634614298319 3.68583786150544 5.04123401243577 4.71022672793351 5.26463522863612 5.2875774369781 3.27840667621175 4.94287200932773 3.89750887819739 5.38309879555366 4.88664965068562 4.48180977926038 5.03008846314235 5.14759975520864 4.85908806914759 4.57229209510618 4.38350707696259 0.283817669835536 0.292856596341766 0.291925003826670 0.287229020559031 0.283817669835536 0.286520532129311 0.283817669835536 0.285665321628799 0.303820008173112 0.288096995406737 0.285829183645951 0.288679771012227 0.283817669835536 0.288986613270477 0.292817044045918 0.283817669835536 0.286496064828969 0.283937639678278 0.289971652359848 1 1 - 18381057 18381606 18381392.182 18380923 18382302 - gene protein_coding_gene FALSE TRUE AT1G49650.1 cell death associated protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49660.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83375.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.424013345123176 -3.73816072251913 0.00333766419067176 1 3.76857043774338 9.39719146712538 -0.424013345123176 0.130910204142052
AT1G61460_at 2.02918426487708 2.38872066474872 2.79689097431593 2.64533256523489 2.64217914415870 2.54314252303073 1.55059085779808 1.83612218458485 2.03776436428024 1.77314870388749 2.08758553622437 2.25911052434789 2.26875948678565 1.81821318286995 1.68332308191795 2.03100775899037 2.23676107121892 1.90066202813445 2.25705873815105 0.192571052989303 0.193443248086420 0.187303693441598 0.202226801723854 0.188708792511323 0.194546366106326 0.187563268608998 0.187860386554058 0.187303693441598 0.188274267028298 0.19344547011976 0.198214502051169 0.189916260599845 0.188467618061802 0.192694599219773 0.187303693441598 0.190531061588661 0.197308612077598 0.193403745439062 1 1 - 22677980 22678372 22678117 22677863 22681378 - gene protein_coding_gene FALSE TRUE AT1G61460.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G61420.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.359376186860574 3.7370969579287 0.00334380350581329 1 3.7669572524734 4.33318794863568 0.359376186860574 0.085407826757221
AT1G42990_at 9.57134378996678 9.82512696902381 10.0156205810047 10.1067053331563 9.73553896016037 9.44057537785248 8.88272366651231 8.96830702472312 8.6766782649644 8.45376846131771 8.63289227651624 8.91520667964317 8.45945135667555 8.48709638710479 8.10671664192294 8.6852049265362 8.6000723580089 8.44887562234389 7.97814656232743 0.172239163524933 0.168071076564696 0.168725920193276 0.168453239757655 0.169832463856075 0.17750365852222 0.176702626588460 0.171072988486796 0.190367946800890 0.178339674254909 0.177052949932649 0.168071076564696 0.177595834113149 0.181726361370877 0.180856785421663 0.174012957613344 0.192225672884543 0.190930644031415 0.182640713105177 1 1 - 16138508 16139476 16138740.182 16138292 16139903 - gene protein_coding_gene FALSE TRUE AT1G42990.1 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60); DNA binding / transcription factor AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). It is hypothesized that upon ER stress the protein is proteolyzed and the soluble part translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G10800.1); similar to bZIP transcription factor protein [Capsicum annuum] (GB:AAX20030.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.342571567688863 3.73666079269979 0.00334632412597743 1 3.76629577446495 18.0239780264485 0.342571567688863 0.0707263126862775
AT2G37790_at 4.68793520380899 4.69113031685876 3.69562207924849 4.15536026822485 4.50647452492182 4.68989099608032 6.55013217377914 6.24116403319129 4.77511371306206 6.17139572915879 6.03205350514539 6.46611077973327 5.69003125445891 6.12716647004536 7.04885587009942 5.73299035762552 6.05024349243217 6.1746653288406 5.98228327189093 0.255137692451518 0.247004784887564 0.250149574896830 0.255764529344220 0.240525037037728 0.252992473811704 0.235165436949918 0.251027051378843 0.26819740713923 0.241722201247559 0.240336940164668 0.240291083562493 0.247022406011431 0.246276960883991 0.24024678068352 0.234869023133339 0.241286542550471 0.241191348558294 0.239815490739854 2 2|0 +|/ 15847181 15847755 15847427.75 15845842 15848010 + gene protein_coding_gene FALSE TRUE AT2G37790.1 aldo/keto reductase family protein similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to aldose reductase [Di (GB:CAC32834.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.379209868598511 -3.73385728838498 0.00336257269789636 1 3.762043503497 10.8063114680150 -0.379209868598511 0.100977407446645
AT1G08490_at 8.00880775728256 8.0874996590597 7.76159198667306 7.94326527631951 7.69390078290997 7.51913959644166 7.70374248682558 7.97086665654511 8.5056152445106 7.9394085752004 7.45233344035177 7.74796037565094 7.6171261701529 7.94736627107129 7.85884342352782 7.7292447536025 7.7237636321526 7.56653143522079 8.04984293696253 0.155508052152606 0.153226825365472 0.159732199790430 0.156657475797382 0.148624671915821 0.156598979527431 0.155979669283625 0.149020093581688 0.162284841292230 0.151221532801704 0.153119097169152 0.151103981959966 0.154216604109880 0.155148602891792 0.152690379218927 0.152408997904419 0.153374297396529 0.148624671915821 0.148624671915821 1 0|1 /|- 2685995 2686983 2686601.222 2685662 2688598 - gene protein_coding_gene FALSE TRUE AT1G08490.1 ATCPNIFS/ATNFS2/ATSUFS/CPNIFS/SUFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation. Identical to Cysteine desulfurase 2, chloroplast precursor (EC 2.8.1.7) (EC 4.4.1.16) (Selenocysteine lyase) (Protein AtCpNifS) (NIFS-like protein) (Plastid sufS-like protein) (NFS2) [Arabidopsis Thaliana] (GB:Q93WX6;GB:Q9SJE3); similar to ATNIFS1/NIFS1 (ARABIOPSIS THALIANA NITROGEN FIXATION S HOMOLOG 1), cysteine desulfurase/ transaminase [Arabidopsis thaliana] (TAIR:AT5G65720.1); similar to Aminotransferase, class V [Medicago truncatula] (GB:ABE89981.1); contains InterPro domain Cysteine desulphurases, SufS; (InterPro:IPR010970); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) -0.336407063591856 -3.73338335757556 0.00336532756298769 1 3.76132456695598 15.7712776618942 -0.336407063591856 0.0650037164419302
AT2G35720_at 3.71762903560552 4.16547505067741 4.26833211874281 4.07747678975651 3.71081760684572 3.65631978898844 4.66712782049632 4.52037851718964 3.58074224341843 3.79490899680821 3.00306749031875 3.452789203852 3.1554474330733 3.5473926706223 2.76745438566771 3.51526626966705 3.83698826954971 3.08569995920419 3.66937102013270 0.216013907461905 0.217312973037337 0.214665125836063 0.214192154242567 0.218942849738938 0.217518101915982 0.218446091521881 0.215308831229459 0.216739523880089 0.214552955094018 0.214192154242567 0.218541323139424 0.219506591364148 0.214192154242567 0.219704038240609 0.219077573418452 0.220987428506198 0.216219504755572 0.217955962812579 2 0|2 /|+ 15026223 15026837 15026635.4 15023749 15027090 + gene protein_coding_gene FALSE TRUE AT2G35720.1 DNAJ heat shock N-terminal domain-containing protein Identical to Chaperone protein dnaJ 13 (AtJ13) (AtDjB13) (ATJ13) [Arabidopsis Thaliana] (GB:Q39079;GB:Q9SL89); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT3G47940.1); similar to putative DnaJ domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM95682.1); similar to Os10g0507800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065018.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.362788453225461 -3.73296254377370 0.00336777562605364 1 3.76068618465438 7.5865382395532 -0.362788453225461 0.088494608620651
AT3G20770_at 10.3101570927721 10.4155152388618 10.4413925887808 10.6491018232962 10.9750040316714 10.6504122425692 9.78930386797533 9.77607952075138 9.82969437465227 9.466843724123 9.8463768024427 9.5977678610193 9.9466030898761 9.71487229940763 9.5732266902986 9.93028887207953 9.5856670797463 9.75211305330217 9.71005457332003 0.0938100117120168 0.0916785776681024 0.0947597242223024 0.0936476208131247 0.093743954004906 0.095945960996424 0.0953190297496744 0.0940312049256848 0.0979727978626878 0.0956830157673417 0.0953839267479465 0.0935830703483684 0.089735884803377 0.0960801249733461 0.0962516133970477 0.089735884803377 0.106972277843072 0.0961082155673076 0.089735884803377 3 3 - 7260795 7261268 7261044.091 7260438 7263358 - gene protein_coding_gene FALSE TRUE AT3G20770.1 EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G27050.1); similar to EIN3-like protein [Cucumis melo] (GB:BAB64344.1); similar to Ethylene insensitive 3 [Medicago truncatula] (GB:ABE82621.1); similar to transcription factor [Cucumis melo] (GB:AAK67355.1); contains InterPro domain Ethylene insensitive 3; (InterPro:IPR006957) 0.340356992989488 3.73026442581728 0.00338351561499066 1 3.75659258952515 20.0819851471114 0.340356992989488 0.0691738647089518
AT3G13360_at 6.09434727100437 6.57938387843534 5.85268981649413 5.16536525651729 6.03407180983008 5.81297238149576 6.83606211433093 6.6223232491161 6.40129108698413 6.28212768693492 6.7463716227681 7.04469161433616 6.3445943258158 6.17843544300529 6.65604601870202 6.77152149492658 6.20686056119859 5.61471276674555 6.97973523950357 0.234484064226465 0.240624584899834 0.24232395977876 0.241848893022691 0.238338720047348 0.244228500468632 0.236332973286747 0.234087410666710 0.255405049325554 0.240679850060435 0.234087410666710 0.239818038975837 0.237415522936541 0.252554271492919 0.242603278027527 0.234087410666710 0.250082306826695 0.25456974895139 0.23985358937707 3 3 - 4338490 4339157 4338794.273 4338366 4340419 - gene protein_coding_gene FALSE TRUE AT3G13360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56210.1); similar to hypothetical protein [Triticum aestivum] (GB:CAJ19339.1) -0.462867376170491 -3.73012088237373 0.00338435513164527 1 3.756374780617 12.6245464231921 -0.462867376170491 0.155001809814693
AT3G61460_at 8.50435884669718 8.83527668612857 8.35550238414734 8.58174087203292 9.07738071291888 9.08295754256743 8.03884322801043 8.21070230367818 8.6557959196751 8.15000267000275 9.00963235913871 9.08267640006894 8.8903751780178 8.49877078146586 9.19170169938291 8.73484931475528 8.09233118951534 8.372405528291 8.44646987225377 0.185706504481966 0.185634762605824 0.182988596685895 0.184950994935199 0.184002534816989 0.188070328742065 0.180243599173624 0.179225417723913 0.195706570394386 0.183453615442143 0.174624331978696 0.172986996163286 0.170847370990229 0.189951640766423 0.174075323290909 0.171049705592032 0.190481827597582 0.185306643591459 0.182266968949622 3 3 - 22752688 22753160 22752936.545 22752486 22753259 - gene protein_coding_gene FALSE TRUE AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41400.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.34688504873683 3.72743528448359 0.00340010168287417 1 3.75229927689649 17.1616031355093 0.34688504873683 0.0754838006367334
AT4G38710_at 6.20979433808407 6.47226831442488 5.94429915762698 5.48915628107992 5.75075725482084 5.7925674462563 7.28837027747899 7.57527592883814 5.88720966199955 5.61899916260376 6.08891953792392 6.22208070623183 6.32285573876965 6.26818543922769 6.1566530904678 6.61625483472803 6.41290304048852 4.99301856769536 5.76710645153355 0.207301511587955 0.204362335057055 0.202868262570166 0.208233076475772 0.211165283035742 0.210774791289247 0.218128421362849 0.212578079111344 0.222718120935117 0.209709013513845 0.20417505417243 0.207698770773099 0.209562447532015 0.211114471249906 0.209462130202131 0.202014290695453 0.209939755885535 0.220545738685264 0.215219240902229 4 4 - 18078175 18079185 18078918.636 18077784 18080077 - gene protein_coding_gene FALSE TRUE AT4G38710.1 glycine-rich protein similar to eukaryotic translation initiation factor, putative (EIF4B5) [Arabidopsis thaliana] (TAIR:AT1G13020.1); similar to Os02g0439700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046743.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC28254.1); contains InterPro domain Plant specific eukaryotic initiation factor 4B; (InterPro:IPR010433) -0.382447534515600 -3.7268797243275 0.00340336856310165 1 3.75145608511800 12.2617514389032 -0.382447534515600 0.103848742782970
AT3G17465_at 4.81121677022731 4.92320960944976 4.76107574133878 4.84948292219013 3.96896937378265 4.79553987137493 4.95793722657469 5.42592482894893 4.64473683880784 4.48757368652646 4.02618316172287 3.77908031723300 4.12175886088672 3.96264026400136 4.70177947614127 4.38786601215954 4.86952207557965 4.51258144772944 5.33689699495908 0.236958133785079 0.235302586191988 0.236705585309431 0.234413598299074 0.231434939589044 0.233536372459143 0.230517499624472 0.239909736322533 0.233484736372307 0.230884070907684 0.230517499624472 0.231712453529707 0.237909842464633 0.235854497552889 0.232040633652495 0.230517499624472 0.234672798162119 0.230517499624472 0.234537939709339 3 3 - 5978094 5978965 5978555.182 5977823 5979658 - gene protein_coding_gene FALSE TRUE AT3G17465.1 RPL3P (ribosomal protein large subunit 3P); structural constituent of ribosome encodes a putative L3 ribosomal protein targeted to the plastid. Identical to 50S ribosomal protein L3-2, chloroplast precursor (RPL3B) [Arabidopsis Thaliana] (GB:Q9LRN8;GB:Q93WN7); similar to ribosomal protein L3 family protein [Arabidopsis thaliana] (TAIR:AT2G43030.1); similar to Translation factor [Medicago truncatula] (GB:ABE84841.1); similar to Os01g0251100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042599.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) -0.481848926563974 -3.72609447248412 0.00340799164474430 1 3.75026422044645 9.37079235566733 -0.481848926563974 0.166221631390586
AT1G08090_at 3.83564875450141 4.08143502500076 2.37892479898210 2.49414718770214 3.65134962677164 3.6077672606902 2.99711543340857 3.061873038047 3.59169614375317 2.85389607994372 2.8771377064466 2.65944539754946 3.17715332935256 3.10624417696997 3.08870873597271 2.57726496450426 3.2147154589693 2.94783734931884 2.9684911113252 0.262387341719960 0.253571328834952 0.241877235954593 0.242262443792002 0.256530332296325 0.249689851759759 0.245391085501038 0.244968034533017 0.241969803279687 0.242797066720011 0.24542117739228 0.241877235954593 0.241877235954593 0.24272817654113 0.243886421499605 0.247395954361496 0.241877235954593 0.248735314214702 0.249191230312011 1 1 + 2525330 2525847 2525579.455 2524073 2526161 + gene protein_coding_gene FALSE TRUE AT1G08090.1 ATNRT2:1 (Arabidopsis thaliana high affinity nitrate transporter 2.1); nitrate transporter High-affinity nitrate transporter. Up-regulated by nitrate. Functions as a repressor of lateral root initiation independently of nitrate uptake. similar to ATNRT2.3 (Arabidopsis thaliana high affinity nitrate transporter 2.3), nitrate transporter [Arabidopsis thaliana] (TAIR:AT5G60780.1); similar to ATNRT2.2 (Arabidopsis thaliana high-affinity nitrate transporter 2.2), nitrate transporter [Arabidopsis thaliana] (TAIR:AT1G08100.1); similar to ATNRT2.4 (Arabidopsis thaliana high affinity nitrate transporter 2.4), nitrate transporter [Arabidopsis thaliana] (TAIR:AT5G60770.1); similar to high-affinity nitrate transporter [Brassica napus] (GB:CAC05338.1); similar to high-affinity nitrate transporter [Prunus persica] (GB:BAD04063.1); similar to high-affinity nitrate transporter [Prunus persica] (GB:BAD02939.1); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.321467616329072 -3.72582349240129 0.00340958851613523 1 3.74985290669013 6.31057822475106 -0.321467616329072 0.0488799199791104
AT1G32410_at 8.62181651399316 8.4171014082196 8.74542846461412 8.76871764889477 9.24474617426628 8.89864966562225 8.79178168462057 8.84607140500187 8.97926652251971 8.48593469902481 9.24140696892982 8.96370821193212 9.44845528206565 9.2166872357251 9.16535994853277 8.91503800792694 8.76616227462882 9.1290495046085 8.54063240262147 0.102666336777485 0.102386112287689 0.105135077792559 0.107569300566333 0.109201148207998 0.111259936714562 0.102858322150046 0.102386112287689 0.108561667948992 0.111942244870092 0.102784559920998 0.102386112287689 0.104435738687264 0.102386112287689 0.108297450854646 0.103116101174706 0.109398184265490 0.104936261782554 0.105187331378776 1 1|0 +|/ 11694380 11695207 11694937.3 11693779 11695546 + gene protein_coding_gene FALSE TRUE AT1G32410.1|AT1G32410.2|AT1G32410.3|AT1G32410.4|AT1G32410.5 vacuolar protein sorting 55 family protein / VPS55 family protein similar to vacuolar protein sorting 55 family protein / VPS55 family protein [Arabidopsis thaliana] (TAIR:AT3G11530.2); similar to Vacuolar protein sorting 55 [Medicago truncatula] (GB:ABE93067.1); contains InterPro domain Vacuolar protein sorting 55; (InterPro:IPR007262) 0.341157478314472 3.72575207538796 0.00341000950165725 1 3.74974450318078 17.6789614393286 0.341157478314472 0.0703336453059438
AT1G01440_at 4.98610723258772 4.89398687809118 5.25111273362634 5.0870782573727 5.36972243933454 5.13348641332437 4.98685900429393 4.68148157246823 4.94149745265225 4.54976817276202 4.66726991892994 5.23173897113927 5.15407656884818 5.52635263973291 4.68243135630743 5.2984066740575 5.14557084689153 4.84192397123244 4.61147012365757 0.201711641058631 0.195174145148458 0.194107650076378 0.195311914539147 0.190180201110392 0.201784555026415 0.190180201110392 0.190941992288703 0.196290956213856 0.192438749535427 0.199451646694277 0.19037517835014 0.191828626630798 0.197339132919600 0.199926081283746 0.190289998334352 0.190246589905541 0.191865695420074 0.194126055528224 1 1|0 -|/ 160162 160786 160442.7 159856 162572 - gene protein_coding_gene FALSE TRUE AT1G01440.1 extra-large G-protein-related similar to extra-large G-protein-related [Arabidopsis thaliana] (TAIR:AT4G01090.1); similar to unknown [Striga asiatica] (GB:ABE66402.1) 0.345400370544672 3.72524172385701 0.00341301946180527 1 3.74896982571575 9.93342095876222 0.345400370544672 0.0743241686785689
AT3G45640_at 10.6111115151808 10.5911580554860 10.9264719449715 10.9045883594349 10.9876056637517 10.763469797632 10.1892963068414 10.0640064083288 10.7426130940443 10.0511642363162 10.5404427380116 10.569001549988 10.4581790229573 10.3830960174357 10.2803999443958 10.3913651163434 10.2822522236595 10.5155563697167 10.1739602632749 0.074946150310978 0.0740965596248066 0.0756308002346489 0.0750273920324801 0.0771538368904773 0.0770591320441284 0.0740425088665011 0.0767381244759269 0.0753976507266651 0.0755148764769108 0.073759930951945 0.0723427239527085 0.0744455011235578 0.074489809249698 0.0738440131580386 0.0742924318719952 0.0782350380833625 0.0762159054001042 0.0733648926408936 3 3 + 16769025 16769430 16769206.909 16767755 16769683 + gene protein_coding_gene FALSE TRUE AT3G45640.1 ATMPK3 (MITOGEN-ACTIVATED PROTEIN KINASE 3); MAP kinase/ kinase/ protein kinase Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers. Identical to Mitogen-activated protein kinase 3 (EC 2.7.11.24) (MAP kinase 3) (AtMPK3) (MPK3) [Arabidopsis Thaliana] (GB:Q39023;GB:Q9M1E3); similar to ATMPK6 (MAP KINASE 6), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G43790.1); similar to mitogen-activated protein kinase 3 [Chorispora bungeana] (GB:AAV68711.1); similar to mitogen-activated protein kinase 3 [Brassica napus] (GB:AAV34677.1); similar to double HA-tagged mitogen activated protein kinase 3 [synthetic construct] (GB:ABG54330.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain p38 MAP kinase; (InterPro:IPR008352); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527); contains InterPro domain ERK3/4 MAP kinase; (InterPro:IPR008350) 0.318299147461661 3.72499368089900 0.00341448336585474 1 3.74859330295834 21.0047714167994 0.318299147461661 0.0447310244257725
AT2G17650_at 4.49408530385296 4.59985832236046 4.59116716148630 4.59319889279618 5.31551524648658 5.57267155300728 6.27499652373436 6.07137128721977 5.51407817477187 5.61611363568773 5.22114567606381 4.98892771064714 5.36906595012564 5.49187238175477 4.91653718910685 5.42496408461104 5.58252956563952 5.37406280442684 5.71560020351239 0.227164833834746 0.223366705334406 0.230823386187066 0.235406455492668 0.222389127850156 0.232928125345448 0.232445063238992 0.229660669164354 0.229773142483836 0.228050804220203 0.222016101310696 0.221781670983195 0.228697517476747 0.228233980469557 0.224662566805956 0.222032829326434 0.230028437624159 0.221781670983195 0.237928411258228 2 2 + 7679463 7679925 7679721.182 7678098 7680118 + gene protein_coding_gene FALSE TRUE AT2G17650.1 AMP-dependent synthetase and ligase family protein similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G20560.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05508.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); similar to Os03g0133500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048876.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.330532740104091 -3.7249634743095 0.00341466168394894 1 3.74854744964453 10.6448091238451 -0.330532740104091 0.0596435509338372
AT1G74720_at 5.26909932583511 5.90607035125735 4.69000286326266 5.21285658604938 5.43875579376206 5.9324964268673 6.32367322178772 6.92463344064265 7.09841168914763 6.58347941006037 6.58385488730242 6.94640880827417 6.17100544368672 6.31488835909586 6.46841632612777 7.0681117401897 6.50351410425035 6.1473188083252 6.74812144951726 0.222881388345190 0.222942459874218 0.220375016757853 0.217399984995344 0.219099782667339 0.226480659775899 0.219931243822679 0.216785675933295 0.233354489458635 0.216153607337972 0.216118694438706 0.214100212125238 0.222024187040809 0.216481543371439 0.212283013372934 0.213376717409712 0.212283013372934 0.226843319937316 0.212283013372934 1 1 + 28081538 28082031 28081779.182 28078814 28082491 + gene protein_coding_gene FALSE TRUE AT1G74720.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G03680.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17980.1); similar to putative phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAB89913.1); similar to putative phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAP68393.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.535952770323629 -3.72492579881795 0.0034148841065928 1 3.74849025845771 12.3799204974655 -0.535952770323629 0.196097822175344
AT1G03300_at 2.95135461262189 3.15051761610117 3.0919021561981 3.09748962511603 3.18880971637618 2.81313368595476 3.83032673008205 4.12745539674428 3.94351949578712 3.83567538755072 3.58480164090890 3.65705332352541 3.94797877269851 3.7348549120985 3.66675084388363 3.6977083050992 3.64905255760477 3.30579822244441 3.96666253475515 0.207823564061216 0.200896742740205 0.207089613251283 0.202417078718113 0.202060449922763 0.208029846728455 0.195567097470909 0.203544833952216 0.195473750953348 0.204971005647571 0.200118548821061 0.198871510296381 0.201810886059207 0.210646755167245 0.209410483880521 0.199402972561274 0.211271057445602 0.197027054684769 0.197524630750925 1 1 - 811036 811589 811374.727 811033 813086 - gene protein_coding_gene FALSE TRUE AT1G03300.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G47230.1); similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26540.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) -0.36343288836208 -3.72310052492175 0.00342567783538039 1 3.7457193019669 7.06676650655626 -0.36343288836208 0.0897743558920382
AT1G10960_at 10.4310287378486 10.4922917497489 10.6588465781368 10.8261172632908 10.5606747305218 10.5361853404861 11.768480073177 11.9417935922393 12.2054635620691 11.9140152232105 11.9553233024634 11.8297195811451 11.6447439890946 11.7471577589333 12.1074176069029 12.1183631284039 11.6586590938361 11.9370166954353 11.8683078696182 0.076921074948549 0.0773873046977115 0.0806773526561852 0.0781677778632794 0.0770519644011886 0.0862107779666938 0.0769490321150415 0.0785464084607803 0.082039693514152 0.0761914802777996 0.0761914802777996 0.0761914802777996 0.0765480658993602 0.082272209274245 0.0761914802777996 0.0761914802777996 0.0813093009186593 0.0763104401663562 0.0770559450786582 1 1 + 3664458 3664849 3664723 3664386 3665039 + gene protein_coding_gene FALSE TRUE AT1G10960.1 ATFD1 (FERREDOXIN 1); electron carrier/ iron ion binding Identical to Ferredoxin-2, chloroplast precursor (PETF2) [Arabidopsis Thaliana] (GB:O04090); similar to FED A (FERREDOXIN 2), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G60950.1); similar to Ferredoxin-1, chloroplast precursor (Ferredoxin I) (GB:O04683); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041); contains InterPro domain 2Fe-2S ferredoxin subdomain; (InterPro:IPR006057) -0.317035650291855 -3.72269317369841 0.00342809151166682 1 3.74510084656052 22.8372917729275 -0.317035650291855 0.0432186292120028
AT1G14640_at 2.11446468553384 1.98309421756512 2.19865303110095 2.30538452816193 2.69965131921123 2.41498574557686 2.42924718578379 2.37920977060918 2.59130906904551 2.71564622388344 3.22827716209385 2.84038136133211 3.12042362292814 2.43895964844678 3.28167179518343 2.84692547184122 3.08895455062953 3.08020542511052 2.22740615993387 0.204893410891805 0.201611475819108 0.20311179116925 0.201904239776179 0.20913045350499 0.211154301448156 0.212993144613200 0.201978330410293 0.212255481834130 0.200600106617194 0.198314963651464 0.20382724618283 0.198100305376682 0.200338800393121 0.208365319154559 0.200303756349912 0.201530836511608 0.201424717814636 0.198100305376682 1 1 + 5025354 5025625 5025472.364 5023651 5025950 + gene protein_coding_gene FALSE TRUE AT1G14640.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT1G14650.1); similar to SWAP/Surp; Ubiquitin [Medicago truncatula] (GB:ABE94283.1); similar to Os02g0245000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046418.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain SWAP/Surp; (InterPro:IPR000061) 0.328717876607259 3.72171384639495 0.00343390151318559 1 3.74361391622574 5.06667565910118 0.328717876607259 0.0579637662180433
AT3G48460_at 6.61249345178127 6.44389720180877 7.19293667090377 7.50048045463138 7.14323574268267 7.85707383053622 9.87025012220955 9.87901028951582 8.18698316261893 9.3739418790622 8.53816937832285 8.76676000215085 8.8432601026755 8.6449595605256 8.50131673907753 9.30868483855666 9.39997180917678 8.73089296801886 9.22737986288404 0.173731068067865 0.166691916332949 0.167548606643601 0.170858548640251 0.166318719351955 0.158273923247788 0.157444089849551 0.156673554883669 0.165564550018764 0.156691611746960 0.164129955960406 0.154937642820491 0.165670417400132 0.159078383965876 0.157116332306130 0.161440168412929 0.160711098419874 0.157741694636417 0.154937642820491 3 3 + 17961043 17962010 17961703.818 17960430 17962180 + gene protein_coding_gene FALSE TRUE AT3G48460.1 GDSL-motif lipase/hydrolase family protein similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28650.1); similar to Os03g0844600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051872.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44175.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.432832067507825 -3.72095411738695 0.00343841572803366 1 3.74246032807612 16.6980156670094 -0.432832067507825 0.137646403611935
AT2G03060_at 2.73389914946115 2.54213573829470 3.44228758596347 3.41693925830926 3.34987757083817 3.93291100718207 3.09649284315144 2.90008470363625 3.16406508345064 2.77197320111673 2.98962028121501 3.17480455908945 3.3879493696082 3.56481932359330 2.77693378398019 3.20121970914796 2.56475834032568 3.48801377834733 3.28979881157416 0.217674418747391 0.226343868047584 0.220479738773959 0.221394785949331 0.227042647538622 0.223562120189831 0.230759310220734 0.219036725364564 0.231498973278440 0.217793778525715 0.219623520036097 0.225673206168620 0.220431445604893 0.216808598264736 0.224186584559217 0.216932262969672 0.225895192593980 0.228432560035778 0.225441059573933 2 2 + 902961 903511 903304.636 901613 904148 + gene protein_coding_gene FALSE TRUE AT2G03060.1|AT2G03060.2 DNA binding / transcription factor| similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69540.1); similar to SRF-type transcription factor family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100)|similar to AGL102, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G18750.1); similar to SRF-type transcription factor family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.392793304026785 3.72069335509079 0.00343996655904746 1 3.74206436556747 6.28622544470985 0.392793304026785 0.111606156496809
AT2G42880_at 8.29742902614723 8.3391910762659 7.01810339151163 6.22731628022262 8.40631060027152 7.79703902108823 8.50314795235975 8.26986847883118 9.08250503633995 8.7477296161639 9.3969321980631 9.35962822808458 8.72448530242417 9.06648258162745 9.14941656310941 8.6912772578857 7.68888767809697 8.68317627597562 8.74203612004575 0.146610997176284 0.147079179389898 0.16368479272648 0.159262879717558 0.142655832499574 0.150126690359363 0.14020848788777 0.145952246259619 0.143976177577646 0.142197635644204 0.140475206839058 0.142096035294749 0.143412419928501 0.150268183943066 0.14559505257214 0.142477820159565 0.167558857602522 0.149961121762185 0.143730641300922 2 0|2 /|- 17847660 17848281 17847940.4 17847465 17851457 - gene protein_coding_gene FALSE TRUE AT2G42880.1 ATMPK20 (Arabidopsis thaliana MAP kinase 20); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 20 (EC 2.7.11.24) (MAP kinase 20) (AtMPK20) (MPK20) [Arabidopsis Thaliana] (GB:Q9SJG9;GB:Q945L8); similar to ATMPK19 (Arabidopsis thaliana MAP kinase 19), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G14720.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to ATMPK18 (Arabidopsis thaliana MAP kinase 8), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G53510.1); similar to HA-tagged mitogen activated protein kinase 20 [synthetic construct] (GB:ABG54347.1); similar to Mitogen-activated protein kinase 7 (MAP kinase 7) (OsMAPK6) (MAP kinase 6) (GB:Q67C40); similar to mitogen-activated protein kinase (MAPK), putative [Musa acuminata] (GB:ABF69963.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.5013023201595 -3.72043953974838 0.00344147676901715 1 3.74167894418292 16.7085304040914 -0.5013023201595 0.177557753097727
AT1G12520_at 9.54911987428477 9.36285349615369 9.67582114391521 9.59715560964021 9.46621394621466 9.44414243418733 8.85025342621239 8.67074841019381 8.6676995340771 9.04914935790793 10.1307710703579 8.24259556521102 8.41518292338824 9.11710620838072 10.9245540766001 8.4780458303587 8.59659244158202 9.62380455594097 9.25249653466165 0.136040208988212 0.136581584777688 0.141412178032113 0.131887411732223 0.131014969238795 0.130972989546324 0.135695709041528 0.132597531180097 0.144859915984494 0.130431439114577 0.137885447353049 0.131746908034220 0.134089169833294 0.134184544757248 0.139418736476059 0.133568093083465 0.141296044665119 0.134498241533308 0.131265997279142 1 1|0 -|/ 4267279 4268201 4267640.5 4267104 4268924 - gene protein_coding_gene FALSE TRUE AT1G12520.1|AT1G12520.2|AT1G12520.3 CCS1 (copper chaperone for superoxide dismutase 1); superoxide dismutase copper chaperone Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121)|similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Copper chaperone for superoxide dismutase; (InterPro:IPR011409)|similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) 0.319444628436711 3.71943295136454 0.00344747275741953 1 3.74015035399264 18.4174702390301 0.319444628436711 0.0469462034685988
AT1G73630_at 6.63929247974905 7.02460786933756 7.39044955111508 7.33105094965283 7.5296822917417 7.38034207208033 8.09520856186498 8.23991708010133 7.00895796389563 7.243736648072 8.14687114814424 7.84203537592166 7.94605960510027 7.8480419463929 7.45258796783166 7.52667401813117 7.56578769493446 7.59518160399404 6.61047809112233 0.187757676190589 0.181609580972451 0.182404110075924 0.185757598352651 0.175947894557854 0.185744214688080 0.177926330645108 0.176736925117235 0.189076216353116 0.182275200954919 0.181884532484991 0.173332894969045 0.177350904150263 0.180217686076363 0.175399542617705 0.174255045046308 0.185911189953964 0.182392010766241 0.176294795675929 1 1 + 27688425 27688876 27688652.636 27688397 27689114 + gene protein_coding_gene FALSE TRUE AT1G73630.1 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.347069368705280 3.7176623890372 0.00345804576338847 1 3.73746131513227 14.8012167674985 0.347069368705280 0.0764657262093378
AT4G03030_at 8.23554063873725 8.4668507827141 8.6652303633543 8.79626173145536 8.7158742529778 8.49831835613545 7.91971725299203 7.92539375762658 8.51152268020318 8.70161833375468 8.98343554979884 8.65971274432004 8.89554680766058 8.91766307243239 8.3144975628424 8.97359845597313 8.7751566179814 8.63417416513087 8.71239193441403 0.109066793142777 0.109096696045729 0.111956325204141 0.108334574587714 0.112311361830072 0.111950925970652 0.116912472018220 0.116131809019824 0.119749673381034 0.107951087985879 0.108630722540369 0.112188251379239 0.109979739434993 0.112547219355318 0.111543621533646 0.107572919282339 0.114706368738228 0.112369308450083 0.109878890874109 4 4 - 1335951 1336507 1336199.636 1335729 1337368 - gene protein_coding_gene FALSE TRUE AT4G03030.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G63220.2); similar to OR23peptide (GB:AAA79706.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.329712186928368 3.71766145552449 0.00345805134674218 1 3.73745989726407 17.1084321110698 0.329712186928368 0.0594553955823715
AT3G20270_at 6.17465047103768 6.28543478767025 5.57958953233413 5.7325995653929 5.54403084548602 5.66479733077629 6.62800279244817 6.8979831796197 5.81725224274187 6.29565926914269 6.00925519564773 6.51252340931816 6.13310882269316 6.04710845821498 6.37697149220163 6.26190735384095 5.72195052010375 5.60060087936017 5.52227981617802 0.185164947998554 0.186901033413365 0.196830966145769 0.206478598186885 0.182085343173532 0.203241511957756 0.193515160988402 0.190132710193034 0.191124126711743 0.186141433478152 0.190081778242242 0.188154132547311 0.183889721755705 0.188957874769505 0.182085343173532 0.190185522597624 0.190848548920934 0.203860342461453 0.191690872859016 3 3|0 +|/ 7070058 7070843 7070465.9 7067065 7070952 + gene protein_coding_gene FALSE TRUE AT3G20270.1|AT3G20270.2 lipid-binding serum glycoprotein family protein similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G04970.1); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant a [Gadus morhua] (GB:AAM52335.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant b [Gadus morhua] (GB:AAM52336.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124)|similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G04970.1); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant a [Gadus morhua] (GB:AAM52335.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant b [Gadus morhua] (GB:AAM52336.1); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124) -0.33086616606412 -3.71736983680821 0.00345979597898934 1 3.73701696641246 12.0440487509840 -0.33086616606412 0.0607318788823967
AT3G62260_at 5.0137515025806 5.18359183887351 5.85858929117761 5.85850215886148 4.56609895789867 4.4254677145263 5.78347761320911 5.58983339815891 4.58302749938847 4.69222984955775 3.88050288298849 4.025869354492 4.37835745179725 4.30337749287001 3.62603368860664 4.24139671616055 4.51238048178829 4.60688198860029 4.60180883481457 0.213729470742946 0.209986005326888 0.218863669885784 0.219272470994317 0.213576471061066 0.208417791577201 0.233508404011900 0.218727866842590 0.206900119066501 0.205555010995446 0.212570930023676 0.222392918853573 0.216761475851718 0.208339742312740 0.205555010995446 0.207869414871191 0.219842835672973 0.205555010995446 0.207364909168111 3 3 - 23049520 23050011 23049738.091 23049265 23051559 - gene protein_coding_gene FALSE TRUE AT3G62260.1|AT3G62260.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G48040.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE82399.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.322168889173421 -3.71656637527367 0.00346460746060073 1 3.73579656132384 9.69618342695238 -0.322168889173421 0.05078527162738
AT1G17160_at 7.90792730545885 7.79457280165982 8.07374322012255 8.02361542630111 8.2354379840012 8.36505065277226 7.60421310891698 7.42570999558123 7.29612873282719 7.4527990497434 7.89201377930344 7.76746125295619 7.6586457998265 7.82849260604607 7.5518138439244 7.57436018105222 7.33122891688432 7.24348576050694 7.64181980277694 0.143861560054481 0.143284097221748 0.148121979690772 0.143298042448486 0.142734682681384 0.152635754430453 0.149711567854318 0.145210179129573 0.148086614947801 0.159228777914584 0.138791896311454 0.140293177618996 0.147196833870687 0.148412680257588 0.139334593837481 0.141525874898927 0.152398498550037 0.143909504898336 0.143923339410624 1 1|0 +|/ 5868296 5869151 5868797.6 5867639 5869349 + gene protein_coding_gene FALSE TRUE AT1G17160.1|AT1G17160.2 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to Os01g0665400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043796.1); similar to Ribokinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] (GB:YP_618630.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139)|similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to Os01g0665400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043796.1); similar to ribokinase [Symbiobacterium thermophilum IAM 14863] (GB:YP_074600.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.316855628504198 3.71591502859945 0.00346851308812243 1 3.73480715307398 15.4635439598576 0.316855628504198 0.0437882485527715
AT1G63810_at 4.28502108588134 4.19987536712977 4.2960673004308 3.88528040608329 4.0135322757216 3.57541433773052 4.70845183956437 4.53166338685639 3.46132632982076 3.41652775265907 3.51001987528646 3.34884039719114 3.24617933833042 3.35520343375635 3.72953570920198 3.48442870046381 3.16048257691705 3.32211551458135 4.17396142699476 0.233398335703782 0.233098404841561 0.230960265542666 0.231904310049485 0.232831226966428 0.230960265542666 0.23697577745932 0.237467741443768 0.241900256328383 0.233537558972498 0.237253452084056 0.239773955125864 0.232023876677953 0.233793008208755 0.231431714682073 0.230960265542666 0.230960265542666 0.237895918009817 0.235175972484976 1 1|0 -|/ 23673364 23674407 23674004.3 23673195 23679561 - gene protein_coding_gene FALSE TRUE AT1G63810.1 similar to Nrap protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95899.2); similar to Nrap protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95898.2); contains InterPro domain Nrap protein; (InterPro:IPR005554) -0.389008574904271 -3.71565990880359 0.00347004408654491 1 3.73441960758541 7.7261828481119 -0.389008574904271 0.109339485088577
AT1G18600_at 6.31789510434372 6.04915760439281 5.8945282302741 6.36414606900513 6.34142452773454 5.85169892399406 5.66623670257808 5.71983846950741 5.76373482242174 5.27045750988490 6.28115095306836 6.51032601992885 5.58230307701192 6.16237127281494 6.25662352990488 5.9474196261345 5.69008355964826 6.2520160481146 5.25703992081886 0.194256649636325 0.194360004870440 0.197429407666107 0.191414940332583 0.190476641118346 0.196245949667035 0.193875912258128 0.192740276949125 0.195082124588753 0.198512117477932 0.199376409872353 0.193280691143598 0.194584819417784 0.204026848911193 0.200643676570179 0.190476641118346 0.201679360632437 0.196851509916882 0.203400557709436 1 1|0 +|/ 6401405 6402536 6401971.3 6400396 6402783 + gene protein_coding_gene FALSE TRUE AT1G18600.1 rhomboid family protein similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT1G74130.1); similar to Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis (ISS) [Ostreococcus tauri] (GB:CAL52917.1); similar to Os01g0763100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044332.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) 0.414771738666454 3.71561782795081 0.00347029668489992 1 3.73435568298216 11.7834644599138 0.414771738666454 0.126633579414629
AT1G54450_at 1.92871316844544 2.03218342328388 1.30149859885525 1.71719970203768 1.79226750454862 1.55390192912329 1.88506382577737 2.17578451059629 2.67570482904564 2.63390491830959 2.37918747975362 2.68126151053148 1.68385762140427 2.16155308723029 2.40408996904691 2.44352694033271 1.83007267852554 2.09030942094002 2.32041458847743 0.195256173350856 0.195804660596005 0.197131323067742 0.196508536336893 0.204884861912554 0.195677679851756 0.203034296641960 0.200932581135473 0.210653766090165 0.195840843516249 0.201010023930811 0.202153186868422 0.194739996208482 0.191308564060978 0.199206426161285 0.189580167154345 0.197008266721622 0.193301714134671 0.195914107713484 1 1 - 20340248 20341062 20340673.091 20340007 20343202 - gene protein_coding_gene FALSE TRUE AT1G54450.1 calcium-binding EF-hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28900.1); similar to calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B'' regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G44090.1); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28850.2); similar to putative protein phosphatase 2A regulatory subunit [Oryza sativa (japonica cultivar-group)] (GB:AAK13162.1); similar to putative phosphatase subunit, 3'-partial [Oryza sativa] (GB:AAL31038.1); similar to putative protein phosphatase 2A 48 kDa regulatory subunit isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD34016.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.374164202595739 -3.71528080496901 0.00347232041559104 1 3.73384370724589 4.17461347470756 -0.374164202595739 0.098633593005431
AT2G47820_at 2.24902115444135 2.66428599676905 2.1682312242681 2.79805177156763 1.70062118919845 2.07808355502841 1.96684203451254 2.4201108420062 2.89573949405031 2.43642308887236 1.71230710610177 1.44912955227529 1.97889196621693 2.01381923452233 1.62705354472170 1.74877158579479 1.98589527779157 2.42086525192727 2.72947351285407 0.230456092250763 0.230993013430695 0.233745590998634 0.231044027979029 0.245946931637756 0.237363336310178 0.243301310725983 0.232272911096691 0.238965425582959 0.238911998039423 0.231193371635919 0.240049355720897 0.240219719176001 0.231714502059637 0.230245773087091 0.231117576756544 0.242065392563377 0.230347184668307 0.236811179560232 2 2 + 19597163 19597631 19597381.091 19594478 19597892 + gene protein_coding_gene FALSE TRUE AT2G47820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09040.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95909.1); similar to Os07g0568200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060027.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.479469206961633 -3.71447222127079 0.00347718071549927 1 3.73261532356921 4.53280783189623 -0.479469206961633 0.165721799513052
AT2G25830_at 7.74913564165122 8.35975601102086 7.61197274205197 7.78666696917558 7.17330946310105 6.97186330822591 8.54961447254428 8.6351241142147 7.74077594010246 8.08964813450378 8.2247865249595 8.58382929562212 7.90307163572949 7.8984370519054 8.90586339811006 8.12173008069068 7.021157286668 7.88226778297651 7.95228969389676 0.187025860810388 0.185986269672421 0.189943604112799 0.187555328742013 0.187258003704624 0.195063212910379 0.190399288204757 0.18038781339231 0.190253073371049 0.190793971586815 0.18909630634676 0.192910559233396 0.180375228188505 0.192536621730813 0.179658048766419 0.189093591685331 0.194715617973446 0.187272864585827 0.184429904668578 2 0|2 /|- 11026174 11027269 11026900.4 11025794 11028777 - gene protein_coding_gene FALSE TRUE AT2G25830.1 YebC-related Identical to UPF0082 protein At2g25830 [Arabidopsis Thaliana] (GB:O82314;GB:Q93ZW2); similar to Os05g0519800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056067.1); similar to hypothetical protein CPn0573 [Chlamydophila pneumoniae CWL029] (GB:NP_224769.1); similar to hypothetical protein TC0742 [Chlamydia muridarum Nigg] (GB:NP_297116.1); contains InterPro domain Protein of unknown function DUF28; (InterPro:IPR002876) -0.398691406652042 -3.71230747460543 0.00349022739593184 1 3.72932630824878 15.8522874093734 -0.398691406652042 0.116252007677984
AT2G43900_at 3.63071449122183 3.53466903091841 3.37972489743152 3.05423953664272 2.74882673051519 3.6552540050641 3.37170208305353 3.68799245955553 5.0603570592415 4.49729772750145 3.87338325890534 4.2866523341194 3.74223067526265 3.94516138211037 4.29075722265335 4.22016871127436 3.66347285145667 3.6064683256548 4.24828015201996 0.257470339030570 0.256123307740264 0.260496646254392 0.262282147620631 0.260294810661067 0.262701959695453 0.261033850425194 0.256123307740264 0.261790056953266 0.260660541938224 0.256123307740264 0.257868802313139 0.258101134891625 0.260161505686328 0.259464341093695 0.269019216640948 0.261427686631462 0.256123307740264 0.259636910511918 2 2 - 18185946 18186452 18186178.818 18185665 18190947 - gene protein_coding_gene FALSE TRUE AT2G43900.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G31830.1); similar to 5PTASE13/AT5PTASE13, inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G05630.2); similar to FRA3 (FRAGILE FIBER3), inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G65580.1); similar to Os09g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063577.1); similar to Inositol polyphosphate related phosphatase; PapD-like; WD40-like [Medicago truncatula] (GB:ABE79233.1); similar to Os08g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062285.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.497599845757647 -3.71089841776107 0.00349874679912541 1 3.72718515841963 7.66064798335065 -0.497599845757647 0.176211415352001
ATMG01130_at 3.81607009899058 4.47645303580182 3.86861744405495 4.04612044507158 3.28005806464977 3.59783189743738 4.16981039957553 4.3005036545992 3.17640669659268 3.65019494881563 3.16114808080305 3.23333941560096 3.22918324389434 3.54311949035304 2.56724433670446 3.09184866452197 3.38886287685427 3.08992643984675 3.72361033333627 0.177666174725800 0.187166196128318 0.184196922809862 0.178018132932330 0.180989309804692 0.195425691324405 0.193708473961543 0.190426446248443 0.183883248971635 0.184230397014147 0.17942359076231 0.180905653682598 0.181764683736242 0.183095764075499 0.182567108689279 0.189087111835211 0.193092817423483 0.177750068928549 0.189775994573487 M M - 289228 289491 289379.182 289197 289517 - gene protein_coding_gene FALSE TRUE ATMG01130.1 Identical to Hypothetical mitochondrial protein AtMg01130 (ORF106f) [Arabidopsis Thaliana] (GB:P92544) -0.423102796057101 -3.70888172914641 0.00351097746425732 1 3.7241202708811 7.28434382743288 -0.423102796057101 0.132437579190412
AT2G01290_at 7.64241953305751 7.93541558382588 7.82702128644009 7.91266919869142 7.67616364937959 7.80963070223867 8.25909410732525 8.67610452897267 7.58593275027743 8.07480591972634 7.05879224102297 7.30702600297286 7.69892854845494 7.46788183664154 7.09029439767774 7.92741217876494 7.81758385940303 7.32374188290734 7.94960491418527 0.158759899475306 0.150363707210411 0.151890358792572 0.149995939957129 0.152940994052218 0.153995203016340 0.158573360942815 0.155626304541895 0.160012837502632 0.156590811978875 0.155562539922867 0.150124832685162 0.151419040119711 0.162933280428616 0.162436730470629 0.149631435443738 0.152025079716614 0.154864079996794 0.161986469719999 2 2 - 149224 149699 149435.091 148918 150381 - gene protein_coding_gene FALSE TRUE AT2G01290.1 ribose-5-phosphate isomerase Identical to Probable ribose-5-phosphate isomerase (EC 5.3.1.6) (Phosphoriboisomerase) [Arabidopsis Thaliana] (GB:Q9ZU38); similar to RSW10 (RADIAL SWELLING 10), ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT1G71100.1); similar to chloroplast ribose-5-phosphate isomerase [Spinacia oleracea] (GB:AAL77589.1); contains InterPro domain Ribose 5-phosphate isomerase; (InterPro:IPR004788) -0.365272069345113 -3.70829400060115 0.00351455018698898 1 3.7232269738819 15.6331008970132 -0.365272069345113 0.0923686294164314
AT1G21310_at 6.23538209622486 6.1184628229041 6.48125451590272 6.89438482165828 6.75400893182621 6.23646160063005 5.17091989422454 4.81415765899846 6.65967268355149 6.60831430755039 6.34642643407085 6.41935029027716 6.45486336827124 5.74339962996171 6.42372374747617 6.39070305336021 6.63079745041931 6.64268077203391 6.36551435641223 0.323867395727176 0.353929145172059 0.386973375663037 0.378749269519751 0.342499554414232 0.343140925433793 0.328576985767585 0.377061733569218 0.299225652561670 0.338508359820163 0.322378020075387 0.299225652561670 0.299225652561670 0.309433780366954 0.321075676751013 0.299225652561670 0.299633882750187 0.303676727913844 0.299225652561670 1 1 - 7453757 7454237 7453979 7453232 7454997 - gene protein_coding_gene FALSE TRUE AT1G21310.1 ATEXT3 (EXTENSIN 3); structural constituent of cell wall Encodes extensin 3. Identical to Extensin-3 precursor (AtExt3) (AtExt5) (EXT3) [Arabidopsis Thaliana] (GB:Q9FS16;GB:Q9FS14;GB:Q9LMP2); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G26240.1); similar to Extensin-3 precursor (AtExt3) (AtExt5) (GB:Q9FS16); contains InterPro domain Extensin-like region; (InterPro:IPR006706) 0.421894746739387 3.70801730569419 0.00351623347882583 1 3.72280640741161 12.5511258139987 0.421894746739387 0.131735559504442
AT4G12690_at 3.17450777408265 3.64860205485804 2.78208383044564 2.94179019196303 3.55085013948316 3.50677407644556 3.76504414741468 3.54653667467587 3.87688346295948 4.21352592070149 4.44232526616674 4.09160506532474 4.16487697203205 4.25166466973177 4.08029330892725 4.09999586173382 2.96391245184766 3.77323431191829 5.05522739082347 0.204453851936419 0.199945952214568 0.197690763076709 0.200486704899600 0.196313203812848 0.195429576758852 0.199110078206878 0.204271296240136 0.20689202547653 0.190638360068361 0.192582083468852 0.190591279474833 0.194364264383813 0.193779070320391 0.192671114858039 0.190591279474833 0.204465007322086 0.191018874617943 0.199045838135665 4 4 + 7481202 7481618 7481360 7480804 7481867 + gene protein_coding_gene FALSE TRUE AT4G12690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04220.1); similar to Protein of unknown function DUF868, plant [Medicago truncatula] (GB:ABE92686.1); contains InterPro domain Protein of unknown function DUF868, plant; (InterPro:IPR008586) -0.368344269770659 -3.70792377884627 0.00351680264402788 1 3.72266424789466 7.5472073178153 -0.368344269770659 0.094779580164562
AT3G10380_at 8.49407008581712 8.43210274187328 8.78023847187463 8.62621729827978 8.46783358306751 8.24308360474033 8.23551966352136 8.32801708747377 7.99108124006794 7.327289804916 8.19393993419647 8.39654905230031 8.4095067682019 7.94979623997185 8.4143063129985 7.99201987254856 8.0152135938999 7.6575114277617 7.60944429924816 0.166001345033115 0.168010967412105 0.162838178715904 0.165939154546276 0.159931744961072 0.162875677734478 0.160965746728638 0.159791918329855 0.193669898442024 0.175085609025887 0.159541130476956 0.158073778018805 0.160189298388392 0.166132670394517 0.158073778018805 0.159650975866266 0.163597535534472 0.174586874694355 0.161421316159027 3 3|0 -|/ 3219938 3221296 3220589.857 3219528 3228938 - gene protein_coding_gene FALSE TRUE AT3G10380.1 SEC8 (secretion 8) Subunit of the Putative Arabidopsis Exocyst Complex Identical to Probable exocyst complex component 4 (Exocyst complex component Sec8) [Arabidopsis Thaliana] (GB:Q93YU5); similar to Os08g0318500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061521.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72704.1); contains InterPro domain Sec8 exocyst complex component specific domain; (InterPro:IPR007191) 0.321458065155023 3.7069820520197 0.00352253890806404 1 3.72123277936597 16.3364905745704 0.321458065155023 0.0509353705589972
AT1G24120_at 7.35952875459695 7.34620770876373 6.65743778164914 7.03867934316364 7.5539962331089 7.53963684167769 8.03593459292056 7.85558908895217 7.91253818486967 7.7586413742515 7.86154041476458 7.68051204664095 7.2727146033064 7.60409032119446 7.61879699291664 7.18660965301358 7.23608247956513 7.56893679311344 7.53801787150286 0.15173147925358 0.148403293221689 0.151234833310254 0.140775768690703 0.148857333780423 0.150701824471458 0.142513258249573 0.154171928999980 0.155981836696287 0.146392534941579 0.142796418525168 0.142079631744708 0.149492083381109 0.148436204426832 0.145690835159031 0.147445076898591 0.152688795846189 0.143885925237867 0.151798427055367 1 1|0 -|/ 8529421 8530065 8529723.3 8529132 8532200 - gene protein_coding_gene FALSE TRUE AT1G24120.1 ARL1 (ARG1-LIKE1); heat shock protein binding / unfolded protein binding encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. Identical to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1) (AtJ16) (AtDjB16) (ATJ16) [Arabidopsis Thaliana] (GB:Q8VXV4;GB:O48678); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G59980.1); similar to ARG1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37859.1); similar to Os02g0741100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048078.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.342308108442728 -3.70664228370147 0.00352461088431833 1 3.72071629039725 15.0434060714070 -0.342308108442728 0.0730637674761377
AT1G68790_at 7.82106970803264 7.77868355087594 7.5045813178257 7.52086779832247 8.09145701316232 7.87744693078032 8.17667079789963 7.93082353665425 8.10229209626637 8.06845458703067 7.87794767810696 7.79745302589273 7.63300625780342 7.82129274944957 7.53930727927041 7.98768550855177 7.23536892539118 7.6136976528983 8.31803799546647 0.153030601235466 0.151042592515707 0.158988253367444 0.159885010995630 0.154519132788104 0.157296914008034 0.155326378880528 0.151042592515707 0.161195765175705 0.161603129785839 0.164849963677570 0.151325428774414 0.156242270554093 0.152984567074269 0.155577800901089 0.151042592515707 0.164579594144034 0.155898021991938 0.151042592515707 1 1 - 25838595 25839382 25839107.182 25838372 25842982 - gene protein_coding_gene FALSE TRUE AT1G68790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67230.1); similar to nuclear matrix constituent protein-related [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] (GB:BAA20407.1) -0.326465987463436 -3.70639242333254 0.00352613538733867 1 3.72033646382383 15.7632741371567 -0.326465987463436 0.0569512952179244
AT4G30680_at 3.16269501304284 3.05444191181299 2.52757560292254 2.73889494916035 2.80333384339658 3.12781801771776 3.25274132771969 3.17868155506272 3.31647565559592 3.7523224883574 3.3344835347013 2.72123463965119 3.59578120060221 3.38154133113156 3.70844660830112 3.154097414059 2.65527611640909 3.11946804163037 3.50813765809242 0.225126877350564 0.216429797258574 0.225389143933912 0.221469756602803 0.215573356643784 0.226727861186163 0.220018862369684 0.219334550274283 0.227023973102192 0.222137250120877 0.218826216905564 0.224176967116038 0.219858631907536 0.215142343790974 0.225842946743866 0.223465511168161 0.220332349850458 0.223598462356747 0.224675276906685 4 4 - 14958699 14959246 14958982.818 14958693 14960018 - gene protein_coding_gene FALSE TRUE AT4G30680.1 MA3 domain-containing protein similar to MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G24050.1); similar to Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 [Medicago truncatula] (GB:ABE79486.1); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) -0.339794252574052 -3.70607773906255 0.00352805637789469 1 3.71985808451983 6.34799096668409 -0.339794252574052 0.0707515171603434
AT1G71720_at 8.39882649826893 8.24216338059472 8.06567409546023 7.56017496304787 8.66543341608875 8.11808873366902 9.17466134646909 8.67016316818546 8.62411600257288 8.88559473842668 8.28522522930875 8.45359785968241 8.22738298923928 8.29584464349577 8.6140296142012 8.32399639121653 8.22467642171183 8.15835467395725 8.6909959948868 0.146260549473692 0.131154016870808 0.132369997329989 0.140863330894496 0.124597127288031 0.133584166988556 0.125144700481150 0.126273780614814 0.131372308038264 0.126858126033248 0.137958598084643 0.126609718568439 0.129862753715877 0.129719249441661 0.125838191207503 0.125785107426103 0.137589815847147 0.139573974401501 0.126275051869400 1 1|0 +|/ 26988395 26989527 26989090.875 26987406 26989652 + gene protein_coding_gene FALSE TRUE AT1G71720.1 S1 RNA-binding domain-containing protein similar to RPS1 (ribosomal protein S1), RNA binding [Arabidopsis thaliana] (TAIR:AT5G30510.1); similar to putative 30S ribosomal protein S1 [Oryza sativa (japonica cultivar-group)] (GB:AAT39212.1); similar to Os01g0589000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043440.1); similar to Os05g0535800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056159.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.464895615211786 -3.70441741806831 0.00353820973262873 1 3.71733389361562 16.8901268951299 -0.464895615211786 0.158056549443132
AT1G63710_at 1.12848083201849 0.98974539098046 1.29530749184969 1.29170385312238 1.54518797773168 1.12135366429049 1.21845507073102 1.27003562939462 1.44337716660806 0.898551885653707 1.64595924828855 1.77077491925271 1.60567406608426 2.08839110811993 1.57209592733212 1.25486876125565 1.88041989614812 1.39585265939559 1.01553951251266 0.194335236544009 0.193940079834799 0.198628101955448 0.205449836974159 0.193206767198338 0.196849286066292 0.196336506117061 0.192767777047461 0.198702721887917 0.197248909441594 0.198004845412418 0.197935414804387 0.20477239337588 0.205796524259862 0.195627554255095 0.197426412644912 0.200026482161493 0.197230253681009 0.195630388037622 1 1 - 23636138 23636576 23636373.636 23635841 23637605 - gene protein_coding_gene FALSE TRUE AT1G63710.1 CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. similar to CYP86A4 (cytochrome P450, family 86, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01600.1); similar to CYP86A8 (LACERATA), fatty acid (omega-1)-hydroxylase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45970.1); similar to CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G00360.1); similar to cytochrome P450 monooxygenase CYP86A24 [Glycine max] (GB:ABC68403.1); similar to cytochrome P450 [Triticum aestivum] (GB:AAG17470.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE91393.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.347153700471945 3.7038170299838 0.00354188871389588 1 3.71642104301805 2.61798911951124 0.347153700471945 0.0776929849076862
AT2G17570_at 4.58744572807651 5.31250762454492 4.95064839374001 4.79682204013608 5.82791664832757 5.46527991389658 4.07573713919903 4.23388608228547 4.11667292589672 3.24679727959547 3.78600968575843 3.70580130901985 4.09931922650851 4.10787129289342 3.52196480989199 3.81249699164965 4.28716032265900 3.52210832488427 3.66554913602528 0.199776380385162 0.195839187790784 0.206646018057501 0.196544098434372 0.205960266391192 0.207508552201578 0.193515039102934 0.196167407386364 0.212220157770768 0.204222328133518 0.190674703584951 0.203682126712414 0.200315011145791 0.198345347778457 0.193466429091929 0.198882431656614 0.205869618606535 0.191751670025240 0.204291643767009 2 2 + 7652551 7652981 7652753.364 7651135 7653336 + gene protein_coding_gene FALSE TRUE AT2G17570.1 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein Identical to Dehydrodolichyl diphosphate synthase 6 (EC 2.5.1.-) (Dedol-PP synthase 6) [Arabidopsis Thaliana] (GB:Q8S2T1;GB:Q94EZ4;GB:Q9SHL2); similar to undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein [Arabidopsis thaliana] (TAIR:AT5G60510.1); similar to cis-prenyltransferase [Periploca sepium] (GB:BAC16756.1); contains InterPro domain Di-trans-poly-cis-decaprenylcistransferase; (InterPro:IPR001441) 0.443387160200449 3.70295485760587 0.00354717873951021 1 3.71511009345818 8.67212108423275 0.443387160200449 0.145396177399470
AT3G56060_at 8.61657311353583 8.79672289890347 9.07241334317406 8.89696383319442 9.36687443207629 9.24675768374392 9.21599868576896 9.17657657939719 9.40388068239095 9.0573748026632 10.2265887372826 9.69355276839627 9.89318692408433 9.80614674354056 9.60109369114747 9.28048500541647 8.95773599740028 9.87721167537315 9.20767945607875 0.109780735149195 0.105433126566017 0.103184967051777 0.107964841302806 0.107780285170495 0.110277029257253 0.102654270316023 0.106071409643397 0.110935911992239 0.105680363980489 0.107800123621396 0.103271814690758 0.106556714645454 0.110238890027377 0.103956551370126 0.105732249464904 0.126495828115584 0.111561556895001 0.107289596367459 3 3 - 20814470 20814937 20814734.727 20814112 20816992 - gene protein_coding_gene FALSE TRUE AT3G56060.1 glucose-methanol-choline (GMC) oxidoreductase family protein similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G51950.1); similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G51930.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os04g0573100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053612.1); similar to Os10g0524500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065107.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) 0.319153191382495 3.70053579529228 0.00356206500217998 1 3.71143140303437 18.4935993244948 0.319153191382495 0.0487076213059116
AT1G65850_at 1.25894979197209 1.71010210252774 1.50893936559629 1.89257491213421 1.11743324961429 1.17919531827836 1.99079418340433 1.59069062961782 2.19359779345835 1.82455462708655 1.53830284449368 1.37487091632280 1.61562666919388 1.63362482155577 1.34850503828963 1.21012809763837 1.52891849433279 1.87958362188521 2.34670174536845 0.194096878671037 0.194609174326364 0.199760249590049 0.201555427861265 0.198656181011823 0.200719101148138 0.212127468291296 0.195310583072423 0.192379494237366 0.196811505675379 0.193946748432048 0.197112976186562 0.195220649953216 0.196724710781028 0.192379494237366 0.199516931135858 0.19709883747505 0.199247967817536 0.193426768906075 1 1 + 24501553 24502076 24501888 24498397 24502148 + gene protein_coding_gene FALSE TRUE AT1G65850.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G38340.1); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G38350.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G25510.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.409260728907571 -3.70049495784040 0.00356231685832147 1 3.71136929532789 3.34999150327737 -0.409260728907571 0.124143299022514
AT2G18220_at 3.29245403995023 3.52198900547639 3.15770938168309 3.15547583413343 2.75223908167421 2.46754011242234 3.0744233060051 3.08781788745176 3.50023426056335 3.56848565922332 2.91167410840445 3.39828568313229 2.81444526510272 2.76985160663616 3.52075734535976 3.55699670518768 3.11950953793984 2.89858870187000 3.21039905518213 0.196683326255052 0.203737707914495 0.201131726917649 0.206713732004929 0.201846858069524 0.201231656714766 0.204222564449621 0.202082315401150 0.201826712760358 0.201057849028815 0.198922965847154 0.196683326255052 0.200435957833632 0.198133755882494 0.203831819965441 0.196683326255052 0.199463280213201 0.199751566251327 0.202314108071486 2 2|0 +|/ 7937737 7938863 7938204 7935336 7938933 + gene protein_coding_gene FALSE TRUE AT2G18220.1 Identical to Nucleolar complex protein 2 homolog (Protein NOC2 homolog) [Arabidopsis Thaliana] (GB:Q9ZPV5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55510.1); similar to Os10g0495500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064951.1); similar to Uncharacterised protein family containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54429.2); similar to Nucleolar complex protein 2 homolog (Protein NOC2 homolog) (GB:Q8LNU5); contains InterPro domain Protein of unknown function UPF0120; (InterPro:IPR005343) -0.331769664847378 -3.69994784394272 0.003565692840065 1 3.7105371976416 6.33877438652976 -0.331769664847378 0.0633304902243164
AT2G25560_at 6.50805956751464 6.95022873903996 6.49427467449799 6.83685701713761 7.16593620567123 7.11590366479093 6.287234523934 6.42180567694381 5.42349056283464 5.41560871452724 5.82768110564854 5.77589844831322 5.53599405663374 6.18102423617668 5.72068338888472 5.95384932773899 6.07945753154347 5.70387846940458 5.54101970705752 0.196147567140372 0.196731394792324 0.196631127894262 0.197746808506619 0.194938177119593 0.2018992253509 0.197145683858028 0.20191547093239 0.218547367503957 0.196322037600556 0.197321104630382 0.193996254174435 0.207158888792969 0.19616780074685 0.193996254174435 0.195126581126281 0.216763419098775 0.204288682799434 0.196132853003510 2 2 + 10890406 10890802 10890626.182 10887749 10890946 + gene protein_coding_gene FALSE TRUE AT2G25560.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G53150.1); similar to Aminotransferase, class-II; Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78703.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.374339711368099 3.69971798587911 0.00356711217183341 1 3.71018759947891 12.3762114996993 0.374339711368099 0.0999364669689343
AT4G32551_at 7.96250883215769 8.15132065639292 7.83716313561352 7.8664801112137 8.43537727226647 8.39162193552703 7.93161181318078 8.08484108248248 7.23938399422553 7.7658961856338 8.18926291734802 8.0722235142412 8.1761122631387 8.07730188994538 8.08745153098816 8.34103860925225 7.93021155096485 8.10096283695668 7.7708148481863 0.16190961215742 0.148985875385447 0.153821065157617 0.153376357250773 0.159976203120322 0.163368502365606 0.159982744698287 0.155409201041757 0.174279824638168 0.154545039780261 0.148985875385447 0.150962369466084 0.152947847467878 0.160739982335396 0.161401503202461 0.151108356139234 0.163676257787811 0.157020673375959 0.155952788265178 4 4|0 +|/ 15712449 15713315 15712935.111 15707516 15713585 + gene protein_coding_gene FALSE TRUE AT4G32551.1 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. Identical to Transcriptional corepressor LEUNIG (LUG) [Arabidopsis Thaliana] (GB:Q9FUY2;GB:Q9SZY9); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G32700.6); similar to Lissencephaly type-1-like homology motif; Single-stranded DNA-binding protein, SSDP; WD40-like [Medicago truncatula] (GB:ABE92662.1); similar to putative LEUNIG [Oryza sativa (japonica cultivar-group)] (GB:BAD52823.1); similar to STYLOSA protein [Antirrhinum majus] (GB:CAF18245.1); contains InterPro domain Single-stranded DNA-binding protein, SSDP; (InterPro:IPR007591); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.314939490345454 3.69939057720326 0.00356913486899642 1 3.70968962305737 15.9395417624141 0.314939490345454 0.0430565875740645
AT2G33310_at 7.69107856756056 7.59024496715004 8.1272684685728 8.08809296451294 7.98557225930796 7.96821102899228 7.36136366849086 7.96231809565596 7.95240127150127 7.40532450575582 7.93608526282935 8.07267195645291 8.10203019836667 8.35868660416673 8.29180732764756 8.27470670236046 8.02455024409329 7.61022718182965 7.77375465441495 0.126972859507113 0.128561947012161 0.125838413641548 0.128616868586634 0.133306159127447 0.128226882176557 0.131217412282944 0.124656798072883 0.127329426560878 0.129341393134099 0.125044324758756 0.121487271734602 0.124099142141694 0.130825682076390 0.131244819226516 0.121487271734602 0.130233849716143 0.134442799593266 0.122815898223538 2 2|0 -|/ 14121648 14122309 14121997 14121358 14123164 - gene protein_coding_gene FALSE TRUE AT2G33310.1|AT2G33310.2 IAA13 (indoleacetic acid-induced protein 13); transcription factor Auxin induced gene, IAA13 (IAA13). Identical to Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13) (IAA13) [Arabidopsis Thaliana] (GB:Q38831;GB:Q84TE5); similar to IAA12 (AUXIN-INDUCED PROTEIN 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G04550.2); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.38219353156323 3.69927610940768 0.00356984231885919 1 3.70951551887321 15.7439383335016 0.38219353156323 0.105712148044687
AT4G35790_at 8.2904967577237 8.47804655320228 7.78476738354126 7.64806574829204 9.03397847581277 8.27571384803954 7.72232392468654 7.644474154937 7.48579500313429 7.41086652473637 8.38169210473526 8.3282239240428 8.68332609239471 8.3215709036832 7.90040302038105 7.8514092057244 7.1529561267235 8.3252299246088 7.32980621090772 0.207999847862175 0.204762042314260 0.208897965713502 0.209460749726267 0.20373568923207 0.211417425708861 0.213360470037046 0.202266080753009 0.228097979131714 0.206419322785974 0.202266080753009 0.202266080753009 0.202266080753009 0.208377258700036 0.209629540923742 0.204821136427220 0.247522356428155 0.209627556412518 0.205240812521887 4 4|0 -|/ 16955778 16956760 16956229.4 16955538 16960174 - gene protein_coding_gene FALSE TRUE AT4G35790.1|AT4G35790.2|AT4G35790.3 ATPLDDELTA (Arabidopsis thaliana phospholipase D delta); phospholipase D Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. Identical to Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD delta) (PLDDELTA) [Arabidopsis Thaliana] (GB:Q9C5Y0;GB:Q944P8;GB:Q947R2;GB:Q9FS18;GB:Q9SZS7); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D delta isoform 1b [Gossypium hirsutum] (GB:AAN05432.1); similar to phospholipase D delta isoform [Gossypium hirsutum] (GB:AAN34820.1); similar to phospholipase D delta isoform 1a [Gossypium hirsutum] (GB:AAN05433.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973)|Identical to Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD delta) (PLDDELTA) [Arabidopsis Thaliana] (GB:Q9C5Y0;GB:Q944P8;GB:Q947R2;GB:Q9FS18;GB:Q9SZS7); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D delta isoform 1b [Gossypium hirsutum] (GB:AAN05432.1); similar to phospholipase D delta isoform [Gossypium hirsutum] (GB:AAN34820.1); similar to phospholipase D delta isoform 1a [Gossypium hirsutum] (GB:AAN05433.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.430537424738969 3.69786146203593 0.00357859729040123 1 3.70736373173655 15.8731953519691 0.430537424738969 0.137889723217816
AT1G08680_at 6.03663955396797 6.37530275952322 6.24002641980875 6.2148585980966 7.56544092746296 7.06364537324461 6.34531733428826 5.88490466746176 5.15027696502698 5.24732627913073 5.30439246341302 5.04060786790925 5.59312640226508 5.44688179332483 5.38912769405377 5.50576710524899 5.68998769224412 5.50622888119515 5.21535872574512 0.171529650246190 0.167675445982867 0.168363330489667 0.171262255001676 0.177670533288765 0.176842396865272 0.170019748648697 0.166744003688789 0.173935665451643 0.169158926831683 0.168575586016927 0.168905277262057 0.167218300486203 0.172151938125405 0.170810368900580 0.167387051575389 0.171227403946939 0.175759296344424 0.175891872212008 1 1|0 +|/ 2762868 2768351 2765905.4 2762593 2768970 + gene protein_coding_gene FALSE TRUE AT1G08680.1|AT1G08680.2|AT1G08680.3 ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4); DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. similar to human Rev interacting-like protein-related / hRIP protein-related [Arabidopsis thaliana] (TAIR:AT4G13350.2); similar to GTPase activating protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95689.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.420323040832713 3.69479520257262 0.00359765000398577 1 3.70269892336150 11.7851847762773 0.420323040832713 0.131692755814120
AT2G23810_at 10.0986570303510 10.5207901013818 10.8723739181051 11.0266363019822 10.7910697454761 10.2549973701204 9.53957056971888 9.62642173445952 10.2981847055844 9.59628802350717 10.0784878376223 9.66930580222065 9.7841951309592 10.3086264769691 9.34123485707459 9.62942780204681 9.53983355010335 10.0614536151859 9.4485647300249 0.129629371097480 0.127752839007066 0.126895435007998 0.126632450091853 0.130487423538897 0.132050867162164 0.132692647736671 0.132304120462012 0.132497417931649 0.124833769100208 0.124588940380196 0.124588940380196 0.132821852429368 0.125317276254226 0.133516778053157 0.129990914194567 0.143062089559143 0.124588940380196 0.130792951038493 2 2|0 -|/ 10142954 10144179 10143295.9 10142685 10144531 - gene protein_coding_gene FALSE TRUE AT2G23810.1 TET8 (TETRASPANIN8) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] (GB:AAC34855.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.405233811296854 3.69362739330701 0.00360493391356753 1 3.70092200929726 20.1326061566468 0.405233811296854 0.121989414088816
AT3G52200_at 7.41457242269353 7.48174986508847 7.31597273943863 7.78927855077411 7.58204803393539 7.46834787025504 7.43344277114127 7.37097057150143 6.32632540630198 6.46887728591214 7.244478868845 7.09516931464689 7.05955611400245 6.88326588188231 6.80186765786306 7.14836344196912 7.03927290324892 6.9456275533365 6.49453924194061 0.16788419308482 0.162176681060528 0.161352371233742 0.166399133547275 0.168010617038703 0.159229518704055 0.169953456948462 0.169663461984238 0.181812695540599 0.161349654307673 0.160962532058852 0.156314653581361 0.156222818689753 0.161622098320662 0.173285045675183 0.159689756278272 0.188396195241781 0.173821199889372 0.159988007937123 3 3|0 +|/ 19375343 19376846 19376147.625 19371184 19377365 + gene protein_coding_gene FALSE TRUE AT3G52200.1 LTA3 (Dihydrolipoamide S-acetyltransferase 3); dihydrolipoyllysine-residue acetyltransferase dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclear Identical to Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 1) (PDCE2) (E2) (Dihydrolipoamide S- acetyltransferase component 1 of pyruvate dehydrogenase complex) (PDC- E2) (LTA3) [Arabidopsis Thaliana] (GB:Q0WQF7;GB:Q39082;GB:Q9SQI7;GB:Q9SUY5); similar to dihydrolipoamide S-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G13930.1); similar to Os06g0499900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057705.1); similar to dihydrolipoamide S-acetyltransferase [Chlamydomonas reinhardtii] (GB:AAT02515.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide acetyltransferase, long form; (InterPro:IPR006257); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.355507064958660 3.6929322381502 0.00360927699750474 1 3.69986420133399 14.2106049506164 0.355507064958660 0.0857208949290157
AT1G15380_at 2.54970463439529 2.76315153750151 3.08630424673089 3.32930450946371 3.34795841205391 4.19486326140802 1.80644850714079 2.34828486028213 2.50887104883070 2.24674381251267 2.69185573777649 2.46606406937536 2.25577674454473 2.19973005073853 1.67907308499697 2.06744764074022 2.71153419813314 3.01779688550033 2.72926502000202 0.242248634989191 0.233523819490683 0.230728070420035 0.242336958029258 0.229401106111381 0.253614707272072 0.224762301538509 0.222241630004809 0.218732340743208 0.229292561452266 0.229824875913932 0.223300254343406 0.222553940333110 0.221790792701981 0.219604251287536 0.233847151123217 0.221889661734865 0.218732340743208 0.233847298155186 1 1 + 5290958 5292257 5291582.727 5290740 5292530 + gene protein_coding_gene FALSE TRUE AT1G15380.1|AT1G15380.2 lactoylglutathione lyase family protein / glyoxalase I family protein|lactoylglutathione lyase similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT1G80160.1); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABD28405.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.506955031805732 3.69282019449095 0.00360997751242862 1 3.69969370085374 5.36881237708412 0.506955031805732 0.182770892018284
AT2G37710_at 11.3837983957581 11.6314007055886 11.9224725672042 11.9737848407782 11.0216207466488 10.8163210946795 10.1632756462978 10.3599119596449 10.1893884426684 9.73757134595416 10.1325653224304 10.3158704210078 9.97681480398252 10.3615277316412 9.5811278055489 9.93868088691485 9.40527543323364 10.1917569239432 9.68261932535556 0.108595845146925 0.102832526835116 0.103689437676184 0.105266468651461 0.101700190020267 0.115248388321901 0.102038996697602 0.102060143493101 0.110876554579842 0.104072730007116 0.102906806705475 0.101700190020267 0.102865014082172 0.107794339187795 0.102472977589636 0.104239256766509 0.116667333495907 0.109702455118217 0.104269785391495 2 2 - 15822016 15822453 15822282.636 15821796 15824082 - gene protein_coding_gene FALSE TRUE AT2G37710.1 RLK (RECEPTOR LECTIN KINASE); kinase Induced in response to Salicylic acid. similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G02410.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G02420.1); similar to receptor kinase Lecrk [Gossypium hirsutum] (GB:AAP47579.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.333522923466861 3.69222741113132 0.00361368602723076 1 3.69879161913562 21.0879793049486 0.333522923466861 0.0658412480915991
AT1G61667_at 2.03996060478238 2.3623057397378 2.53072657341203 3.04408571272709 2.36104422683687 2.39298584332909 2.03068749800212 1.76556647228243 2.0194994362554 2.39848650816248 2.76030446804487 2.51015761106036 2.50584186387983 2.50604021578896 2.32312232277885 2.5035293595123 2.29712726669168 2.51103103044188 2.28502166332038 0.233658620784972 0.227252945794582 0.225349074810466 0.224410279211330 0.224473576661737 0.229614507832977 0.225120555999909 0.236693455413671 0.231315112936863 0.222652730709726 0.228982909491137 0.224548202984582 0.222652730709726 0.230793029755438 0.22805292855856 0.223534233700310 0.231559662490519 0.23040365737296 0.228717898445794 1 1|0 +|/ 22771400 22771720 22771585 22771328 22772166 + gene protein_coding_gene FALSE TRUE AT1G61667.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54530.1); similar to Os07g0548800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059929.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57724.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.393944454201919 3.69021294338658 0.00362631818999992 1 3.69572575502878 4.67791040214919 0.393944454201919 0.114628751944015
AT2G26530_at 9.12822401138693 9.32946135716292 8.45891899156082 8.36832214004911 9.43288410138265 9.00304191149149 8.22783133746052 8.03052405074457 8.09040146012252 7.900828597057 8.9931721599873 8.88098690551947 8.51058514005608 8.94572528524198 8.19575208618939 8.92092363101936 8.12593629562439 8.38882823787632 8.11651663059252 0.189229108523205 0.182326528404599 0.193148029522672 0.195030638502966 0.181579974989619 0.189787001041419 0.181869041600504 0.182689279084587 0.205562944880019 0.186329784421615 0.185626193920531 0.185206965283087 0.188186005041621 0.187347481477305 0.190326899518724 0.187047498724558 0.199966599726469 0.194309770397738 0.183026323864989 2 2 - 11290213 11290683 11290460.636 11289853 11291307 - gene protein_coding_gene FALSE TRUE AT2G26530.1|AT2G26530.2 AR781 unknown function similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT2G15760.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83385.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442)|similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT2G15760.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83385.1); similar to pheromone receptor-like protein [Quercus robur] (GB:CAE12164.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 0.360552376015444 3.68660529331534 0.00364905487734286 1 3.69023402867950 17.0754781277949 0.360552376015444 0.0903203993527038
AT2G30270_at 4.74168251633629 5.45102485218523 5.44469836581973 5.3854385695413 5.3164775700739 4.87974107172118 4.87142774730499 5.77500065273211 3.84720310719566 3.85343338736808 5.21546370374249 5.09489894051828 4.7917301137041 4.5320042795566 5.19809202075718 5.39664069987544 4.35507830863667 4.51663529335562 3.73159506907111 0.308586461570848 0.285212009285031 0.296491455051024 0.295075302634054 0.289667573702115 0.289475932552599 0.290120610334863 0.293113044038302 0.299949990759215 0.285458253765066 0.300161046871533 0.282757299646775 0.300313411323314 0.288947547894840 0.304928596608797 0.288789191394456 0.293850477224608 0.282757299646775 0.287314072700094 2 2|0 -|/ 12915556 12916064 12915892.143 12914918 12916338 - gene protein_coding_gene FALSE TRUE AT2G30270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01750.2); similar to Protein of unknown function DUF567 [Medicago truncatula] (GB:ABE88873.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.56181450881136 3.68592185829604 0.00365337869124591 1 3.68919350563032 9.58234230549596 0.56181450881136 0.212924832252871
AT1G65700_at 6.45749494889177 6.47880664757733 6.85193847730811 6.72450724709545 6.78783191022964 6.5548637131484 6.32768616384521 5.80435009357263 4.9705690243323 5.41508040495577 5.36950324788409 5.60151538084499 5.57626557187026 5.21609559764395 6.00210872267111 5.33386880152256 5.35194824663104 5.5741499324602 5.26094357831776 0.241348182966064 0.235022635643618 0.235031987255451 0.234246165191136 0.234927999183434 0.23905489910431 0.238745044270013 0.237822942493452 0.234469273377667 0.234926706359833 0.236491634451232 0.233848487847794 0.241042376082398 0.243428389277189 0.233848487847794 0.236001899398057 0.24608276611543 0.239520591404618 0.238627795626682 1 1|0 -|/ 24438129 24439509 24438642.125 24437909 24439950 - gene protein_coding_gene FALSE TRUE AT1G65700.1|AT1G65700.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G19120.1); similar to Os05g0594900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056510.1); similar to PREDICTED: similar to CG2021-PA [Apis mellifera] (GB:XP_624537.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.375175904314709 3.68554128805489 0.00365578869717911 1 3.68861406808684 11.8577913703217 0.375175904314709 0.101624165864902
AT1G26420_at 3.15345499538913 3.36966765318344 3.64236484333500 3.16479656806559 3.37081843812041 2.97678969685097 1.0366353971939 1.19880680701483 1.72700355943932 1.32645578995051 1.29328647972162 1.28956043065407 1.03112078575477 1.06627034941495 1.13868033641960 0.963630125540251 1.31281132529988 1.39977949203525 1.42432707409831 0.221108010677982 0.229031156702642 0.228529801947840 0.223061662468523 0.214931337136053 0.215541959026028 0.214027539799769 0.211255734423706 0.206135333105225 0.210201165232495 0.215425580267048 0.222724090593353 0.209533174649888 0.211863417022803 0.21191364704189 0.210447879249044 0.220521202452286 0.216158881011134 0.207329507982679 1 1 - 9141706 9142227 9142007.636 9141554 9143291 - gene protein_coding_gene FALSE TRUE AT1G26420.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26410.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26380.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26390.1); similar to FAD linked oxidase, N-terminal [Medicago truncatula] (GB:ABD32603.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.396674057253336 3.68454920864764 0.00366207888016238 1 3.68710349904046 4.07891074494471 0.396674057253336 0.116908331248801
AT1G12845_at 6.75286207849135 7.66288969713251 1.73158537195979 2.43873496524829 4.61946856527549 4.32724846970361 2.35050843791267 2.45838954058827 3.37495578249473 3.16375047527814 6.21731808873973 7.68904652469146 5.16598495191521 5.86465140106441 7.74869717174423 4.07210526997071 2.91513509808721 5.81429942434050 2.6409160482211 0.259423443604974 0.248408721390980 0.252210854717563 0.251685816969900 0.247845497685194 0.268701860425261 0.249327934155793 0.248512690505053 0.253375856659265 0.256648695353536 0.247845497685194 0.249550736484354 0.250266295175107 0.255399162290975 0.250301913443789 0.247845497685194 0.263492131257724 0.253815553287031 0.255798804419348 1 1 - 4379065 4379349 4379214.273 4378937 4379514 - gene protein_coding_gene FALSE TRUE AT1G12845.1 similar to hypothetical protein MtrDRAFT_AC149131g9v1 [Medicago truncatula] (GB:ABD32556.1) 0.549563771918392 3.68372463291862 0.00366731552923451 1 3.68584789056430 8.41560031244758 0.549563771918392 0.206598694517456
AT4G27300_at 8.33206508536001 8.44727510566827 7.15190956979369 7.06692532969073 9.0043320248096 8.12913443421009 6.65631915349161 5.96161034196879 7.23666346748234 8.65494736091751 6.80985966071808 7.42759102095362 6.56108162315439 8.07384313514015 5.3988282616164 5.93309284181665 5.92026611714832 6.85851040197086 8.61031877624867 0.200249793921963 0.200249793921963 0.211563625004813 0.203787550770284 0.201301388801379 0.214672634297950 0.212133573083957 0.206468868587299 0.236209161026140 0.202354701436413 0.209264602837363 0.200249793921963 0.203797512799067 0.203571516258980 0.206328321394804 0.205107539349613 0.206916059526947 0.206256245985071 0.205248901892882 4 0|4 /|- 13669322 13669907 13669524.667 13669314 13672354 - gene protein_coding_gene FALSE TRUE AT4G27300.1 S-locus protein kinase, putative similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G27290.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82224.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); similar to EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like; Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE86763.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.527833908698753 -3.68317322764127 0.00367082166435275 1 3.68500820445205 14.9887933811396 -0.527833908698753 0.194952574964197
AT2G32120_at 2.88991619256624 3.27080059394686 3.01210650850724 3.44616034089107 3.74457249743362 3.84830336667153 3.49606043306728 3.8677238849564 2.98153886205023 3.42954923747022 3.74338093588609 3.96655133695277 4.15561915550377 3.938300561943 3.351475500748 4.1097858307703 4.38921285490787 4.17944061838013 3.51325037840638 0.201688382630130 0.197745554737520 0.204548911773314 0.200001863359008 0.190223263830621 0.197119455559485 0.190223263830621 0.194642603809903 0.196201215926495 0.195277606126118 0.191857835631125 0.190223263830621 0.201442158307423 0.193496110530553 0.200485122099593 0.19105895740256 0.194366188118372 0.198099542094937 0.198418152605067 2 2 - 13658811 13659271 13659036.727 13658587 13660998 - gene protein_coding_gene FALSE TRUE AT2G32120.1|AT2G32120.2 HSP70T-2; ATP binding similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE91718.1); similar to Os03g0218500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049397.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 0.401384212826277 3.68311225537235 0.00367120957178189 1 3.68491535307367 7.09062231493608 0.401384212826277 0.120191350478268
AT2G23670_at 8.8765134524205 9.29769017406048 8.04085268362704 8.53999741652776 8.6654948325136 8.6613561569052 10.0437489478698 10.1266024827926 9.42739474587812 9.73002898154544 9.85173677505335 10.2501684886240 9.58789722131248 9.83461741143328 10.0865148759296 9.82319293252204 9.83596648288406 9.3821053408439 9.36200369305167 0.152419065155291 0.153180534493752 0.179980988638416 0.167856812685385 0.152246572556449 0.157135485794768 0.158281199984682 0.151516564535650 0.165900406886242 0.156963096833367 0.152373881920161 0.149256361826021 0.1639123436527 0.151605185540162 0.155136024884310 0.152955527098929 0.156400797065612 0.161939728057023 0.158567932498311 2 2 - 10070435 10070857 10070681.091 10070235 10070943 - gene protein_coding_gene FALSE TRUE AT2G23670.1 YCF37 (Arabidopsis homolog of Synechocystis YCF37) similar to Os02g0815300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048501.1) -0.392082178821082 -3.68227159991273 0.00367656216552571 1 3.68363512108453 18.7005323922898 -0.392082178821082 0.113929540307173
AT3G32930_at 9.29497938454162 9.28598595513904 9.24978050921368 9.35500312286315 9.89804062330886 9.36393213363938 8.91037189682573 8.78593685501953 8.88874999208875 8.76862519827374 9.32661108865788 9.37762792612866 9.05994960112393 8.90714097950744 9.68598596708294 9.1368270721876 8.7820336539179 8.88726897925045 8.7626795128617 0.153377616717885 0.148668049743605 0.153547282823323 0.146303227972594 0.149449222109549 0.162586691945077 0.150506252972693 0.150674327736322 0.168397111913850 0.157990588376221 0.149818105701504 0.150161277107024 0.150018037372477 0.158030213723997 0.147998590847728 0.157316478217818 0.163602806706630 0.16050634690913 0.158445941327677 3 3 + 13493470 13494390 13493816 13493231 13494562 + gene protein_coding_gene FALSE TRUE AT3G32930.1 similar to Os07g0608100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060239.1) 0.368058165891077 3.68059350998845 0.00368727096183336 1 3.68107932192158 18.2440615898473 0.368058165891077 0.096648920921380
AT1G31120_at 4.70869757920159 4.5843469075893 3.83123000197079 4.15616029958387 4.20940806684884 4.32607088275044 4.23997730571845 4.31588214543416 4.46198691032408 4.5692939340738 4.25665956407338 4.09875341926197 4.44961501323207 4.31038843536080 4.30470326452251 4.3428506240832 4.32274240917145 4.00802797863252 4.74780568331311 0.203206183974122 0.204558896630762 0.206852492563571 0.204839048168586 0.206017664475148 0.201649493719974 0.201984308215401 0.208050263092278 0.206143734673692 0.209708422311338 0.200909554977264 0.202773525043686 0.200923651157779 0.200837743912486 0.203336868705237 0.199588912023095 0.203664174545134 0.205964721552501 0.205173821825787 1 1 - 11104381 11104878 11104667.727 11104282 11107744 - gene protein_coding_gene FALSE TRUE AT1G31120.1 KUP10 (K+ transporter 10); potassium ion transporter potassium transporter Identical to Putative potassium transporter 10 (AtPOT10) (POT10) [Arabidopsis Thaliana] (GB:Q9SA05); similar to potassium ion transporter [Arabidopsis thaliana] (TAIR:AT4G19960.1); similar to KUP11 (K+ uptake permease 11), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT2G35060.1); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to Putative potassium transporter 12 (OsHAK12) (GB:Q8VXB1); similar to putative potasium transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD21001.1); similar to Putative potassium transporter 9 (AtPOT9) (GB:O49423); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.331409962862739 -3.67962280018702 0.00369348028673486 1 3.67960074533597 8.72384486419346 -0.331409962862739 0.0648469204878047
AT1G28280_at 6.3585447651475 6.86644925760637 6.7285547780605 6.97026747848852 6.59221979003221 6.33360738309715 5.6374788676384 6.08961746973231 5.88728041678794 5.10908183830792 6.00440352955513 5.951221327093 5.77032139237959 6.26346272062985 5.71067986958092 6.12619568943221 5.34885286736079 5.52129492039027 5.24998815045698 0.203114586333105 0.197819491671719 0.201191162878108 0.202788726046740 0.199434496243496 0.222540688756012 0.197112402672447 0.197112402672447 0.205332776749343 0.201116356363374 0.19727088166601 0.202647472277941 0.207349361127817 0.201348132164160 0.205565800469341 0.199040379191203 0.208108603317992 0.20130917088997 0.211384705688252 1 1 - 9886651 9886948 9886792 9886064 9887465 - gene protein_coding_gene FALSE TRUE AT1G28280.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G33780.1); similar to DNA-binding WRKY; VQ [Medicago truncatula] (GB:ABD32365.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.419871835878445 3.67740657656581 0.00370769727728668 1 3.67622461238798 12.0733445610939 0.419871835878445 0.132666655202652
AT4G22010_at 4.84929074158944 5.03996048109013 2.90225893997835 3.18255584148965 2.88959271117919 3.25835226560724 3.96356566034837 4.43509674124655 4.95573709188978 3.85725284014369 5.89317575594668 7.54021091064203 3.73876915112399 4.92140899079268 6.98290999745866 4.54282357088115 2.63294471144034 4.47142391267097 4.31122183531023 0.303423967433323 0.303423967433323 0.318959338192576 0.33361563628339 0.305942939751895 0.31054675492803 0.30623818680689 0.303423967433323 0.324061234888768 0.30727023271153 0.310900131637291 0.308729671841434 0.306151620053365 0.308156698590658 0.314156708382259 0.303423967433323 0.312724206412021 0.308369127213102 0.303423967433323 4 4|0 +|/ 11665758 11666448 11666151.8 11663336 11666727 + gene protein_coding_gene FALSE TRUE AT4G22010.1 SKS4 (SKU5 Similar 4); copper ion binding / oxidoreductase similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS5 (SKU5 Similar 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G76160.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.399033673583342 -3.67712478281989 0.0037095090189976 1 3.67579529579862 8.54768198826651 -0.399033673583342 0.119049342291561
AT3G26700_at 2.1173329035506 2.37938500056322 2.10055493965591 1.91731921568339 2.27608704246942 1.84627763585051 2.97146692344828 2.8869643892001 3.72242016042231 3.76764972706779 4.36504329895802 3.97221752491477 3.45439250071293 3.44336003123534 3.78435816115577 3.04625205381013 2.34814879123816 3.34323592654938 3.44213048786935 0.236941809683251 0.237625427502500 0.250736012191219 0.24865738465649 0.23840394549 0.242383333355747 0.238597680731187 0.244608170630541 0.247656536718989 0.236941809683251 0.244079350815555 0.242212635372161 0.239098197635772 0.237494212540811 0.246030312265299 0.236941809683251 0.250369699825297 0.247157850591992 0.239656987412428 3 0|3 /|+ 9812859 9813701 9813107.889 9811187 9813901 + gene protein_coding_gene FALSE TRUE AT3G26700.1 protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79620.1); similar to Os05g0371600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055357.1); similar to Os01g0929200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045282.1); similar to nodulation receptor kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87254.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.364084175745208 -3.67702969574626 0.00371012057034696 1 3.67565042732442 5.86876992023183 -0.364084175745208 0.0938529922967188
AT4G18530_at 5.84451171327007 5.92055741046155 6.08540970727378 6.14063840472622 6.60513400032723 6.09492204868643 5.92062078339157 5.81333779303697 4.525659141958 4.3931075242129 4.51467873696577 4.57106392865855 5.33915265150985 5.06377604915752 4.56327409368055 4.9415590741401 5.29588216005133 4.57478688209761 4.55790884289401 0.183093330749488 0.180957592674601 0.190994414640823 0.184698385064341 0.188145791207905 0.187757562960156 0.182288569591357 0.183588113550247 0.198500240110711 0.181921201113995 0.193486105575957 0.182113380385261 0.182331482814821 0.187629184102879 0.197876877152656 0.183638099153439 0.181463128437333 0.188739184995871 0.189538798672915 4 4|0 +|/ 10219373 10220030 10219686.3 10217349 10220511 + gene protein_coding_gene FALSE TRUE AT4G18530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91850.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.361282821278863 3.67663758856731 0.00371264350298238 1 3.67505302754153 10.7282649160072 0.361282821278863 0.0916796232706692
AT2G32340_at 3.45978784843012 3.61937466534902 3.70635392745459 3.63658532412334 3.25962164183051 3.16821941703254 3.87586373837224 3.91092142430454 3.71839891219179 4.08765028872425 3.28542734733057 3.52991823927137 4.24991355921792 3.40577088739584 3.54128018534151 4.21122883365662 4.34261033913852 3.94143729638092 4.65863790834813 0.211397344020487 0.211397344020487 0.211397344020487 0.212502636361484 0.226273053846788 0.217195185133231 0.224342510906103 0.220150655996755 0.214506878195197 0.211397344020487 0.211397344020487 0.216048703548933 0.216961440028751 0.214850419531978 0.228150386480116 0.211397344020487 0.220220429520641 0.245265259622061 0.220889170428747 2 0|2 /|+ 13740401 13741401 13740863.75 13739324 13741611 + gene protein_coding_gene FALSE TRUE AT2G32340.1 TraB family protein similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT1G05270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93860.1); contains InterPro domain TraB determinant; (InterPro:IPR002816) -0.307619604312566 -3.67529598019552 0.00372128921452577 1 3.67300887176374 7.56376301788947 -0.307619604312566 0.034575879309873
AT3G12520_at 5.27400801046262 4.88223829945855 5.73972068327729 5.56179528794719 5.62094757318978 5.22843227570205 6.83376925188026 6.30252091713665 4.04175607583444 6.28177510462764 3.94964604348561 3.18061788722499 4.19417203432256 4.75092742528017 3.7775393236616 4.16883262104401 5.58764128574479 4.65653089949656 4.22308567415567 0.221597002391872 0.215347424943613 0.214387189529619 0.218653886935822 0.223535363242031 0.213277554036856 0.215068556686875 0.225512969911302 0.241491018944384 0.218850801950194 0.221633531636843 0.215432291499930 0.213526925587029 0.221401214042819 0.235209386210370 0.213802644755318 0.225393346131274 0.218844490267086 0.215338353974653 3 0|3 /|- 3968032 3968728 3968454.143 3967823 3971925 - gene protein_coding_gene FALSE TRUE AT3G12520.1 SULTR4;2 (sulfate transporter 4;2); sulfate transporter Encodes a sulfate transporter that in induced under sulfate limitation. Identical to Probable sulfate transporter 4.2 (SULTR4;2) [Arabidopsis Thaliana] (GB:Q8GYH8;GB:Q9LHF7); similar to SULTR4,1 (Sulfate transporter 4.1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT5G13550.1); similar to sulfate transporter [Brassica napus] (GB:CAC94921.1); similar to At3g12520-like protein [Boechera stricta] (GB:ABB89769.1); similar to sulfate transporter [Brassica oleracea var. acephala] (GB:CAD87011.2); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -0.425522004772746 -3.67491669177066 0.00372373722646008 1 3.67243092803756 10.2464843998344 -0.425522004772746 0.136420870054361
AT2G41540_at 6.0489274965369 5.63369853200292 3.71912028010256 3.01520272558848 6.08117734096061 5.96895302470423 5.82216836065838 5.29553838063989 8.14520926901148 6.8653091280851 8.7482949971233 8.88341964341983 6.95760169526937 7.59499674170361 8.97950371762085 6.57831385602835 5.47212904264749 6.76725286493446 7.35417221952741 0.224894502172857 0.224713560532671 0.235101624829216 0.237801224270275 0.228824073732635 0.231231298234977 0.224713560532671 0.228593769665877 0.235227808956350 0.227266767750033 0.225319805906832 0.226427545023707 0.233529750519514 0.228107010141458 0.229215638223193 0.224713560532671 0.234833192650343 0.237019053980653 0.230866740302537 2 2 + 17334834 17335689 17335256.545 17333175 17335980 + gene protein_coding_gene FALSE TRUE AT2G41540.1|AT2G41540.2|AT2G41540.3 GPDHC1; NAD binding / glycerol-3-phosphate dehydrogenase (NAD+)|GPDHC1; glycerol-3-phosphate dehydrogenase (NAD+) Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene. similar to glycerol-3-phosphate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT3G07690.1); similar to Os01g0939600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045350.1); similar to putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:AAU44049.1); similar to putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:BAB90253.1); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase; (InterPro:IPR006168); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; (InterPro:IPR011128); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; (InterPro:IPR006109) -0.480588825992571 -3.67395524383233 0.00372995007875589 1 3.67096584133671 12.6743912386749 -0.480588825992571 0.169368136160716
AT4G23030_at 2.11174974176999 2.38128157325218 2.75026379642833 2.44612179713023 2.83413996244907 2.59887607931892 2.00578237945212 1.27196643108351 1.79296230459061 1.73417556647685 2.00406726332250 2.09436479962296 1.90437389383166 2.07398593196344 2.03211202378383 1.73574044665167 1.74384390568004 1.99864418354107 1.76958441372576 0.204809334809706 0.202685661166743 0.203324925583468 0.215281576439091 0.219688502328266 0.209846025095669 0.214428245208347 0.212563562299562 0.211103756980254 0.204181466914519 0.212448902045495 0.202685661166743 0.207897270985412 0.211794035029928 0.205063184628744 0.211910050461761 0.218785479183012 0.206117427298366 0.207399869198325 4 4 + 12073794 12074226 12074040.364 12072868 12074376 + gene protein_coding_gene FALSE TRUE AT4G23030.1 MATE efflux protein-related similar to ZF14, transporter [Arabidopsis thaliana] (TAIR:AT1G58340.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE90557.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.44873641928038 3.67349936150653 0.00373289971885244 1 3.67027111603313 4.1570055456009 0.44873641928038 0.15076475280308
AT4G16150_at 7.76702491050043 7.96260261727773 8.2133434154526 8.0490847618903 8.46219280135647 7.98220467379123 7.82504614544708 7.3210114176751 8.0936670524031 7.75539114239517 8.28257925148794 8.40966362866713 8.30774585642182 8.1666076544315 8.10658824724254 8.35745936435573 8.52018613541376 8.08902676949077 7.8884565694517 0.174543771253182 0.173393664623864 0.167238549863037 0.167238549863037 0.173679555762766 0.176332796203185 0.167238549863037 0.173735884071861 0.185228279850160 0.186753378468133 0.167238549863037 0.167238549863037 0.169298175040361 0.171897296307872 0.167238549863037 0.167238549863037 0.173949507346752 0.176888136267167 0.174429102849241 4 4 + 9152344 9152820 9152604.286 9148239 9153064 + gene protein_coding_gene FALSE TRUE AT4G16150.1 calmodulin-binding protein similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT3G16940.1); similar to IQ calmodulin-binding re (GB:ABE83204.1); similar to CaM-binding transcription factor [Oryza sativa] (GB:AAQ07306.1); similar to Calmodulin-binding transcription activator 5 (Signal-responsive protein 6) (Ethylene-induced calmodulin-binding protein f) (EICBP.f) (GB:O23463); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.412631166209905 3.67346157880646 0.00373314428773066 1 3.67021353740767 16.0440573603516 0.412631166209905 0.128302400273429
AT1G69800_at 5.79032528030164 6.49635749999525 5.88896368783984 5.65554353030228 6.58289217766472 6.25344521924691 6.8158983494873 6.8621791996871 5.10077189641548 5.82236199058687 4.87186740264658 5.05936864167192 5.17693867256367 5.00936159501283 4.99615951977367 5.6966672583744 5.56939551569717 4.81687885441004 5.93339363363484 0.225028778400444 0.224360856397838 0.228623387241863 0.224360856397838 0.224360856397838 0.237132230136511 0.230288950637827 0.231222018436994 0.229200844393829 0.224360856397838 0.227939952239971 0.224626675310391 0.238557364538483 0.224372152110488 0.232146309587005 0.224360856397838 0.233297527918892 0.224510271461041 0.230475207875376 1 1|0 -|/ 26278100 26278788 26278395.2 26277893 26279992 - gene protein_coding_gene FALSE TRUE AT1G69800.1|AT1G69800.2 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48530.1); similar to CBS [Medicago truncatula] (GB:ABE77489.1); contains InterPro domain CBS; (InterPro:IPR000644) -0.432620876482331 -3.67311337435371 0.00373539900765969 1 3.66968288660015 11.6774117127646 -0.432620876482331 0.140977819694635
AT4G29910_at 4.58779348620789 4.89907503822468 3.88428133263228 3.46743703476375 4.92852181269881 4.06821595516544 4.84227332321821 4.98770703422708 4.409584862636 3.97597728241912 3.88817526476529 4.18306005683815 4.24667733518705 4.3080460543887 3.83424627108643 4.09321470843209 4.21538707286807 3.96531842379469 4.61377640445619 0.290031852579595 0.293852644699927 0.298367581143353 0.295015206693555 0.287005553870699 0.313579401461695 0.297366424696569 0.300164744528079 0.327142930726575 0.285112721375732 0.287396577468688 0.293135592304846 0.28862819334067 0.297617843272797 0.287383465004441 0.285112721375732 0.303355016149666 0.304924993382531 0.285112721375732 4 4 - 14628176 14628845 14628582.1 14627969 14630746 - gene protein_coding_gene FALSE TRUE AT4G29910.1 ATORC5/ORC5 (Origin recognition complex protein 5); protein binding Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits. similar to AAA ATPase [Medicago truncatula] (GB:ABE80181.1); contains domain ORIGIN RECOGNITION COMPLEX SUBUNIT 5 (PTHR12705); contains domain SUBFAMILY NOT NAMED (PTHR12705:SF6); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.491722694035719 -3.67256310211779 0.00373896503963834 1 3.66884426401786 8.67060237627085 -0.491722694035719 0.175795986012690
AT3G12590_at 5.13156779740200 5.53438014815718 5.1264671367883 5.02883001535616 6.07178330986636 5.48228057754107 5.22829351851266 5.19899203521605 4.22083223329116 4.49941106659699 5.16145143758569 4.81808454260432 5.20730845165247 5.20688081347925 5.35305262905531 5.04039922764758 5.46560512735171 4.15202185866943 4.45078806218878 0.282524318732876 0.266950259485776 0.268269336199536 0.28876805837653 0.264495401680086 0.283642589228516 0.264495401680086 0.270335785751342 0.271591356679665 0.294622145212254 0.270444645524525 0.266651119535332 0.264495401680086 0.271431394885581 0.264495401680086 0.264495401680086 0.286908066639708 0.287987822989586 0.276366260141099 3 3 - 3997060 3997255 3997147.5 3995729 4003664 - gene protein_coding_gene FALSE TRUE AT3G12590.1 similar to Os01g0974300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045553.1); similar to hypothetical protein DDBDRAFT_0205357 [Dictyostelium discoideum AX4] (GB:XP_642273.1); contains domain ARM repeat (SSF48371) 0.40714430435637 3.67219662707535 0.00374134192630037 1 3.66828573198484 10.0707964665373 0.40714430435637 0.124811031393314
AT2G06700_at 2.98618428574512 2.65431218961153 2.52347571118195 2.29611076724626 2.88276821161096 3.13763568335782 2.44620301849386 2.56408048037535 3.38961701775046 2.82972130099823 2.73604987927263 2.32760173029615 2.60586472616847 2.96740195465256 2.03431222832807 2.49022367592283 2.59469613406006 3.32512024384032 3.94313334247069 0.360122073237175 0.348039211178303 0.341916678949340 0.334881460016304 0.349732371207858 0.342928672661817 0.334881460016304 0.334881460016304 0.334881460016304 0.359142129714496 0.334881460016304 0.334881460016304 0.334881460016304 0.334881460016304 0.347753194785547 0.334881460016304 0.334881460016304 0.334881460016304 0.334881460016304 2 2 - 2671846 2672216 2672054 2671715 2672368 - gene protein_coding_gene FALSE TRUE AT2G06700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12130.1); contains domain Positive stranded ssRNA viruses (SSF88633) -0.352514566189687 -3.6720582977883 0.00374223950901468 1 3.66807490513049 5.69767098110657 -0.352514566189687 0.0849002776871167
AT4G01480_at 7.84844530439212 8.16733970659123 7.0914502838333 7.38417597558338 7.9538454282092 7.30937107205068 6.62968445173049 7.12384519848255 4.99143550947128 5.44384474289476 5.89478700186855 5.47104124613102 6.09419523534269 6.33465305667746 5.86428350707811 6.18841266918727 6.20088790154568 6.1890922028982 4.85440921320565 0.287419795904945 0.281392312876174 0.282057732671135 0.278455457174895 0.287232354304698 0.276267217924532 0.271222420643791 0.279522645799791 0.278538519997510 0.280541793216578 0.271222420643791 0.271222420643791 0.271540971080299 0.279994808139625 0.272827402295578 0.271222420643791 0.277158495189790 0.279654071047416 0.275444589904604 4 4|0 +|/ 626611 627722 627172 626118 628055 + gene protein_coding_gene FALSE TRUE AT4G01480.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT1G01050.1); similar to soluble inorganic pyrophosphatase [Populus tremula x Populus tremuloides] (GB:AAD46520.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) 0.462743986010301 3.67095474964947 0.00374940811267584 1 3.66639291667988 13.0016358065000 0.462743986010301 0.159259566955088
AT1G47480_at 2.59598777957665 2.74216688643398 3.12494811089933 3.39264466551458 2.35664395203415 2.32305190192527 1.84767750444613 2.04799642791272 2.37299395251859 2.02735498841632 2.49834323740654 2.43626800023378 2.38143131857736 2.92660286032873 2.33375131451423 1.72693350810461 1.76825257918186 1.66419980976560 1.74780393867139 0.201616437094303 0.195282941508669 0.204839902136188 0.196555536061819 0.196692024572252 0.198017266749946 0.200879948725375 0.198927479624069 0.199926041356545 0.198620513575115 0.195570291318133 0.199206637059054 0.199228160806153 0.200737274097538 0.194295380107727 0.204287554575872 0.219349176399096 0.207997073764358 0.197922209992326 1 1 + 17421146 17421695 17421356.455 17420019 17421872 + gene protein_coding_gene FALSE TRUE AT1G47480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48700.1); similar to CXE carboxylesterase [Malus pumila] (GB:ABB89003.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.329226771656474 3.67068035204828 0.00375119278842322 1 3.66597466841665 4.68706821445095 0.329226771656474 0.0634159455578767
AT3G07110_at 9.54605692322905 9.81971864607892 9.17868776040442 9.34446345638694 9.07133996981938 9.08378966089518 9.55439353013483 9.83028570320376 9.0101672860506 9.06801915001653 8.65611332155845 9.15130676304597 8.77115873048186 8.58962546564004 9.38193492876345 8.46792674672576 8.8687240283879 8.79853742048844 8.90884224493688 0.0909188007179242 0.0922079707491068 0.0970261786726772 0.0968277265075521 0.0974664880596041 0.0933085365534298 0.0909188007179242 0.098302915357369 0.0984347877343714 0.094621763843134 0.0994559536962687 0.095636231543202 0.0909188007179242 0.0951659445186663 0.0975078410482515 0.0970347778628042 0.0948176282673217 0.0946686943178768 0.0924536185030166 3 3 + 2252120 2253313 2252553.273 2252025 2253534 + gene protein_coding_gene FALSE TRUE AT3G07110.1|AT3G07110.2 60S ribosomal protein L13A (RPL13aA)|structural constituent of ribosome Identical to 60S ribosomal protein L13a-1 (RPL13AA) [Arabidopsis Thaliana] (GB:Q9SFU1); similar to 60S ribosomal protein L13A (RPL13aB) [Arabidopsis thaliana] (TAIR:AT3G24830.1); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755)|Identical to 60S ribosomal protein L13a-1 (RPL13AA) [Arabidopsis Thaliana] (GB:Q9SFU1); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) -0.339026895075007 -3.67018705662505 0.00375440337671143 1 3.66522274565481 18.3442630325880 -0.339026895075007 0.0731437612658533
AT3G14940_at 5.60636213235677 6.18127094334444 5.10302390586463 5.49632904298656 5.998936522989 6.17090522372265 6.53597491493634 6.10156218890892 4.70085371583488 5.16773849103694 5.84583792914072 6.33644465952997 5.8473837639078 5.69907238009035 6.1050705594697 6.6982213591042 6.70426696832662 6.81090258227389 5.02402206186412 0.241462977358251 0.234877487795169 0.241433657183858 0.242563583767731 0.233832964004768 0.234093635424152 0.229970970619607 0.249085318894652 0.244432903995620 0.246936564784266 0.232908585163128 0.244552310814399 0.243418556250115 0.229637010692355 0.231088275329976 0.231669962069170 0.237137788034727 0.229474340071157 0.230878803319594 3 3 + 5028806 5029424 5029169.909 5025245 5029716 + gene protein_coding_gene FALSE TRUE AT3G14940.1 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. Identical to Phosphoenolpyruvate carboxylase 3 (EC 4.1.1.31) (PEPCase 3) (PEPC 3) (AtPPC3) (PPC3) [Arabidopsis Thaliana] (GB:Q84VW9;GB:O81357); similar to ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT2G42600.1); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.3); similar to phosphoenolpyruvate carboxylase [Brassica juncea] (GB:CAA11415.1); similar to phosphoenolpyrovate carboxylase [Brassica juncea] (GB:CAA11414.1); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AAB80714.1); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) 0.438850698994594 3.66844618913271 0.00376575641653727 1 3.66256894892097 11.5093480001265 0.438850698994594 0.145149099955317
AT3G04340_at 6.58542243916758 6.4325357534559 6.009821564596 5.52228288871908 6.58752025601198 5.7996273138872 7.15865198076945 6.70572073995705 6.53188321441203 6.83778893771689 6.47751740900906 6.8077184427644 6.32090510535087 5.87808261175744 7.03043113275048 6.36783335723476 6.09611399110837 6.53306802305158 6.72105609853946 0.219164630850798 0.219893350353279 0.221335666560608 0.227834336759048 0.223689682507797 0.220951542817129 0.224410142399486 0.216567018285884 0.235806671800159 0.216567018285884 0.224990046535042 0.216567018285884 0.219414705042439 0.230428232493772 0.227482500502733 0.217338403662876 0.241518315728351 0.223451448875755 0.219571774596065 3 3|0 -|/ 1146968 1148283 1147996.7 1146807 1152455 - gene protein_coding_gene FALSE TRUE AT3G04340.1 EMB2458 (EMBRYO DEFECTIVE 2458); ATPase similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to putative cell division protein FtsH [Photobacterium profundum 3TCK] (GB:ZP_01220482.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.499360190147508 -3.66810845724738 0.00376796303182651 1 3.66205406743511 12.9181319550794 -0.499360190147508 0.180424762189108
AT3G44430_at 5.10035984412087 5.67077777580568 4.9532959501921 4.98799312783426 5.48599813826373 5.91131022265261 6.37406799012281 6.72562086825604 4.47550979607923 4.59906671404118 4.62283363059851 4.54078454811492 4.42808536263587 4.83509071576256 4.25659739158414 4.32831504860501 3.84537138534201 4.20273919166644 4.73213400331662 0.247038041906903 0.246067431885969 0.258465490716999 0.246241371261014 0.250622217507220 0.257219375620966 0.25674577158669 0.259066679556159 0.260155278430951 0.262872693101744 0.244065129779486 0.244065129779486 0.244065129779486 0.244345041705739 0.254898985961209 0.245642255266952 0.265177120455398 0.247533208914665 0.252183620766317 3 3 + 16079330 16079881 16079622.091 16079244 16080737 + gene protein_coding_gene FALSE TRUE AT3G44430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41660.1) -0.426408469182169 -3.66810407098669 0.00376799169881225 1 3.66204738037659 10.1435349882065 -0.426408469182169 0.137473420925523
AT3G45260_at 6.7648178820908 6.49151060814099 6.60450427078281 6.46074665340332 6.78212402541104 6.23683542989930 5.57806545823094 5.61426056502429 6.44914975778472 6.19790269455757 7.02027337002044 7.08653950473607 6.95754339966523 7.00133683542036 5.72995712497141 5.91522035523294 6.09164400790552 6.28918683400228 5.8159906439246 0.273106563237252 0.274710697117982 0.289078043695106 0.281912662321166 0.278406402751636 0.270025709699542 0.281277565245933 0.276292251111116 0.276656331102676 0.269203584454961 0.269203584454961 0.277420146404221 0.269203584454961 0.269601638900020 0.293726825785964 0.271304006761109 0.297550353098308 0.278017990495054 0.274635435832793 3 3 - 16607903 16608322 16608117.091 16607366 16609683 - gene protein_coding_gene FALSE TRUE AT3G45260.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G60470.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE79766.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.383001973370506 3.66784905874447 0.00376965875215257 1 3.66165859863412 12.6495133004979 0.383001973370506 0.108627179830971
AT2G14680_at 6.69891564852071 6.14530179493424 7.15700596570459 6.7097799862451 7.30872668886986 7.03924676796597 6.14005325406734 5.91938449328716 5.89723351341715 5.76782254996281 6.25500623630272 6.18443540763469 5.61082637798454 5.84985970624448 5.57571167096146 6.0476263415896 6.60047116415346 5.87783733945311 6.26481348383596 0.193001870401676 0.205015153630290 0.195657938174168 0.197639326481375 0.191733424433173 0.195321046816412 0.191733424433173 0.192813605538105 0.199997411816931 0.191733424433173 0.198285847596936 0.191733424433173 0.209455862875798 0.194826622984079 0.199330630809026 0.195388895794094 0.201216161292358 0.194236306970670 0.202327898954519 2 2|0 +|/ 6289641 6290800 6290546.8 6285338 6290998 + gene protein_coding_gene FALSE TRUE AT2G14680.1 MEE13 (maternal effect embryo arrest 13) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16730.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87154.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.425687326314611 3.66675321834974 0.00377683109678144 1 3.65998783993680 12.6282243064223 0.425687326314611 0.137119314978453
AT1G21640_at 9.72251863536912 9.93520568301172 10.0023928173418 9.98567285605734 9.99966107236073 9.83531376083531 10.5218414068697 10.3692155749906 10.0266807568116 10.0814597055372 9.71426213727082 9.4962910971082 9.67373898231123 9.04629078832698 9.18911030469484 9.74814173420311 9.83395518669733 9.77949784556243 9.94830194814065 0.120903031580275 0.114606710824336 0.118342059379900 0.116754879722733 0.11486133752529 0.118527428565465 0.116659749871159 0.117174174881681 0.122573634026310 0.122141102009149 0.125218437157594 0.117180470949395 0.123018316858839 0.132010603487460 0.123959407270538 0.114606710824336 0.122445802786520 0.120003656437417 0.117572942222652 1 1|0 +|/ 7591596 7592634 7592056.4 7588586 7592879 + gene protein_coding_gene FALSE TRUE AT1G21640.1 NADK2 (NAD kinase 2); NAD+ kinase/ calmodulin binding Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin. Identical to NAD kinase 2, chloroplast precursor (EC 2.7.1.23) (AtNADK-2) (NADK2) [Arabidopsis Thaliana] (GB:Q9C5W3;GB:Q9XI15); similar to NADK1 (NAD kinase 1), NAD+ kinase [Arabidopsis thaliana] (TAIR:AT3G21070.2); similar to Os11g0191400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067415.1); similar to Predicted sugar kinase (ISS) [Ostreococcus tauri] (GB:CAL57506.1); contains InterPro domain ATP-NAD/AcoX kinase; (InterPro:IPR002504) -0.320044162859717 -3.66609935761940 0.00378111736634896 1 3.65899087558466 19.8359652990304 -0.320044162859717 0.0535687408383094
AT1G36730_at 8.05486491561243 7.8170802453047 8.40056227331693 8.41636900873637 8.39998726802822 8.11731543815718 8.38573046443258 8.10267210530832 8.1062932861016 7.94236391661668 8.59079511543156 8.44651726142999 8.24961575226234 8.47642616217446 8.48934098331483 8.59770098140053 8.6643784177598 8.49667524140464 8.1057092181505 0.096464185785995 0.0947932886265276 0.0961031834075539 0.0971382351831689 0.0961094917151015 0.0984383793264941 0.0963917599458826 0.0996936931203141 0.100023387688325 0.097700083604226 0.0935349728165177 0.0935349728165177 0.096100199437521 0.0999362697352058 0.0991725203841709 0.095567580759438 0.107556971745808 0.096364101289193 0.0977215117618675 1 1 - 13899936 13900483 13900201.818 13899422 13902043 - gene protein_coding_gene FALSE TRUE AT1G36730.1 eukaryotic translation initiation factor 5, putative / eIF-5, putative Identical to Probable eukaryotic translation initiation factor 5-1 (eIF-5 1) [Arabidopsis Thaliana] (GB:Q9C8F1;GB:Q93ZX3); similar to eukaryotic translation initiation factor 5, putative / eIF-5, putative [Arabidopsis thaliana] (TAIR:AT1G77840.1); similar to putative eukaryotic translation initiation factor 5 [Oryza sativa (japonica cultivar-group)] (GB:BAD54665.1); similar to Os09g0326900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062885.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Translation initiation factor IF5; (InterPro:IPR002735) 0.346723665084756 3.66435709216487 0.00379256301850139 1 3.65633414858395 16.4882660713722 0.346723665084756 0.080580465809245
AT1G78895_at 5.27364137622876 5.52606777435976 5.1196488000008 5.36769094685085 6.5412242740334 5.94039139846778 3.95660223451985 4.64933121645549 5.05402273853619 4.23006695199141 4.90851804642065 5.15556919226045 4.82313214715118 4.88428435990137 4.3604936080732 4.85172100924892 4.14924464169702 4.61299360543158 4.66028217645114 0.237291083645564 0.218489961698109 0.229420497214161 0.230695344312296 0.2225067579387 0.25710111946917 0.224644218540699 0.219323086888937 0.233814666428479 0.232709898517795 0.223981169411164 0.225600817418165 0.221319013554419 0.246678689965179 0.218822415545884 0.219356393184398 0.247914530880226 0.220153115988927 0.223174258174917 1 1|0 -|/ 29663274 29664695 29664178.375 29663009 29664869 - gene protein_coding_gene FALSE TRUE AT1G78895.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G16830.1); similar to Os08g0225100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061282.1) 0.480474412530353 3.66334852957966 0.00379920501695789 1 3.65479606727821 9.9800090185809 0.480474412530353 0.170097644815827
AT4G30610_at 1.93225816416152 2.5165236581093 1.21216417822432 1.15223035085867 1.44187069310961 1.29918653869129 2.53542983322308 2.25414551636422 2.83025209709943 2.5475757255394 3.71337269764397 4.04534489891665 2.29303438495482 2.87165145449134 4.79559735800412 2.30301133030710 1.14345557940560 2.96632643961111 2.92454768377585 0.230065604153593 0.229188230182882 0.236513177208946 0.231802935344123 0.232808245610260 0.228316828018625 0.228316828018625 0.239517808851843 0.233395833274521 0.229891075196152 0.228316828018625 0.23675885253063 0.228316828018625 0.231501402962796 0.244023853723772 0.230246983945603 0.261175060434307 0.230416590985181 0.228524014431404 4 4 + 14947391 14948339 14947856.636 14944135 14948611 + gene protein_coding_gene FALSE TRUE AT4G30610.1 BRS1 (BRI1 SUPPRESSOR 1) Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease. Identical to Serine carboxypeptidase 2 precursor (EC 3.4.16.6) (Serine carboxypeptidase II) (Carboxypeptidase D) (Bri1 suppressor 1) [Contains: Serine carboxypeptidase 2 chain A (Serine carboxypeptidase II chain A); Serine carboxypeptidase 2 chain B (Serine carboxypeptidase II chain B)] (CBP2) [Arabidopsis Thaliana] (GB:Q9M099;GB:Q94K84); similar to SCPL23 (serine carboxypeptidase-like 23), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G24010.1); similar to SCPL22 (serine carboxypeptidase-like 22), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G24000.1); similar to Os02g0794500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048377.1); similar to putative carboxypeptidase D [Oryza sativa (japonica cultivar-group)] (GB:BAD19262.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.392105293482472 -3.66294153507573 0.00380188872303361 1 3.65417535902702 4.68494250162028 -0.392105293482472 0.115368922036615
AT3G55770_at 11.1342130533040 11.2120313526911 11.3286886150806 11.2879330153120 11.7735057818417 11.6385548126674 11.0420984066638 10.9757974153668 10.9176965216330 10.9975376371116 11.3539512693852 11.0810788792756 11.3013129334400 11.0317148686847 11.1921659091118 11.130949950959 11.1649283673211 11.0737917688951 11.0069637998828 0.0717451877414376 0.0709592512417962 0.0721856390485792 0.0709592512417962 0.0720800168812702 0.0750270956956265 0.0709592512417962 0.0709592512417962 0.0782310706041458 0.0709592512417962 0.0723812396380929 0.0721108116855661 0.0719670393925906 0.0798107112289876 0.0712298147447636 0.0709592512417962 0.0746796287160518 0.0735231966513887 0.0722154228595823 3 3|0 +|/ 20714871 20716004 20715569.1 20714235 20716299 + gene protein_coding_gene FALSE TRUE AT3G55770.1|AT3G55770.2|AT3G55770.3|AT3G55770.4|AT3G55770.5 LIM domain-containing protein|zinc ion binding similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39900.1); similar to LIM domain protein WLIM2a [Populus tremula x Populus alba] (GB:ABK58469.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) 0.304153128196950 3.66158959107748 0.00381081744513180 1 3.65211337332696 22.3692541714126 0.304153128196950 0.030135516829563
AT4G13520_at 10.3250618494361 10.3635165879426 10.2780252671052 10.4651060509707 10.7099209853658 10.3720751521642 10.1131045985611 10.3100159516543 10.1248370540365 10.1818184263651 10.7895468035946 10.8279077079539 10.6115996444743 10.7673750686531 10.8075868831686 10.6849946394530 10.5363695437765 10.5665613650623 10.2823237284013 0.0851361632776563 0.077936601479096 0.0817928402968188 0.0798109557925194 0.0834440361929286 0.089617533454686 0.0813791984777402 0.0807289194299972 0.0919364552490277 0.0799146447240118 0.0830093588411613 0.0839013029989447 0.0811427645149817 0.0833382533958705 0.081956725701839 0.0815345970451182 0.0857336692460432 0.0813429781743133 0.0783489550420982 4 4 + 7864458 7864620 7864532.545 7864390 7864920 + gene protein_coding_gene FALSE TRUE AT4G13520.1 SMAP1 (SMALL ACIDIC PROTEIN 1) Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid. similar to SMAP2 (SMALL ACIDIC PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT3G24280.1) 0.340511710542813 3.66096473821626 0.0038149515085498 1 3.6511602784809 20.8147628603757 0.340511710542813 0.0753119650366831
AT4G27090_at 11.192601473941 11.431463391883 10.7807130702344 10.9344718424410 11.1422064507145 10.8720431380899 11.1351630873592 11.4054902430378 10.8850288323955 11.3669398531901 11.0804189353120 11.2294430582378 10.9978884886021 10.9132500367424 11.1571008053615 10.7934996887387 10.4057918577255 10.3477166917241 11.3589719814609 0.107275951695217 0.107152816413789 0.110460486068849 0.109977005595770 0.110494512048255 0.115559747222425 0.109493130865921 0.1081587436551 0.119508033082890 0.107971644756787 0.111766681680325 0.107477374076349 0.107417341336247 0.111146398900884 0.111739297021555 0.107152816413789 0.130305194152440 0.121911710647899 0.107170067231065 4 4 - 13594142 13594921 13594538.727 13593911 13595258 - gene protein_coding_gene FALSE TRUE AT4G27090.1 60S ribosomal protein L14 (RPL14B) Identical to 60S ribosomal protein L14-2 (RPL14B) [Arabidopsis Thaliana] (GB:Q9T043); similar to 60S ribosomal protein L14 (RPL14A) [Arabidopsis thaliana] (TAIR:AT2G20450.1); similar to glycoprotein-like protein [Solanum tuberosum] (GB:ABA40467.1); contains InterPro domain Ribosomal protein L14; (InterPro:IPR002784) -0.348414558697638 -3.65991711103513 0.00382189306213082 1 3.64956222369507 22.1464118793731 -0.348414558697638 0.0824077809755092
AT3G11040_at 2.31867035439038 2.63199886125418 2.04801086749090 2.44395637492781 2.25040833850209 2.14445149799555 1.62600172087214 1.48453381715275 1.91236899527183 1.33590715050139 2.47259182252315 2.60160914547588 1.83120187665591 2.27150535008836 1.70568093884921 1.89905400322803 2.07685618718693 2.35793123328512 1.66297044779955 0.190181884582724 0.171063402785105 0.173560116968095 0.182933426894610 0.174404497971066 0.176388153094951 0.174642012563541 0.174033714797252 0.180264703578774 0.184561072050318 0.178614556415337 0.179598678418065 0.174544951369699 0.175442196793437 0.183206893302140 0.174654413928904 0.185066592329115 0.171063402785105 0.177083840378502 3 3 + 3462726 3463265 3463000.091 3460149 3463318 + gene protein_coding_gene FALSE TRUE AT3G11040.1 glycosyl hydrolase family 85 protein similar to hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G05460.1); similar to Os05g0346500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055263.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV43808.1); contains InterPro domain Glycoside hydrolase, family 85; (InterPro:IPR005201) 0.360688601557851 3.65907627587020 0.00382747384722726 1 3.64827952184113 4.01307198783281 0.360688601557851 0.0925781990107642
AT1G08620_at 7.67693621110944 7.9109123198775 8.19870092362303 8.4043176722002 8.64081533430976 8.53016931484534 7.82763268521265 7.53589612802315 7.25033141145103 6.70564820780989 6.95780773125402 7.0340876834224 6.66537737119935 7.00495087329613 6.48898102850485 7.53892912166039 7.51019978702135 6.84857795597893 7.13147015032303 0.182706820582363 0.183988478764673 0.183394681436280 0.189279026431354 0.188821018185721 0.193191925555556 0.182588731588124 0.188371898700527 0.200795750831086 0.194635114370012 0.184801221400924 0.184694306221161 0.188446703564946 0.182097207779642 0.184081736737488 0.184345659545269 0.18602260847343 0.180372960784517 0.194327613664188 1 1|0 +|/ 2742268 2743349 2742903 2737557 2743727 + gene protein_coding_gene FALSE TRUE AT1G08620.1 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G20400.2); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.341310248018213 3.65796829031802 0.00383484060842559 1 3.64658915942232 15.1083045072685 0.341310248018213 0.076296468298435
AT1G54490_at 7.47277029096947 7.50895633512921 7.98797255508427 7.82785773939636 8.03852374503588 7.8227883138837 7.55162546647515 7.63438727033343 7.44054261233637 7.02424399133856 7.73933140158033 7.18556955016755 7.46314542022089 7.74797938319336 7.17475134126633 7.70881347744223 7.57352472426773 7.33946158520858 7.24753213765086 0.151400577510933 0.15038741505903 0.156162321597109 0.147835775726953 0.147074766537047 0.152870853034531 0.149244047773009 0.148244004895331 0.150036005123457 0.155918706466337 0.147626594647956 0.148668440156773 0.151763010399521 0.148796792907550 0.159642675204528 0.146037859014305 0.150857299934859 0.158701858497161 0.147965174644852 1 1 + 20359723 20360164 20359945.818 20353858 20360583 + gene protein_coding_gene FALSE TRUE AT1G54490.1 AIN1 (ACC INSENSITIVE 1); 5'-3' exonuclease/ nucleic acid binding Involved in the ethylene response. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to 5'-3' exoribonuclease, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99327.1); similar to 5'-3' exoribonuclease, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99328.1); similar to PREDICTED: similar to Y48B6A.3 isoform 10 [Canis familiaris] (GB:XP_856061.1); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.31574163879984 3.65795179142676 0.0038349504165773 1 3.64656398738922 15.0951160599686 0.31574163879984 0.0490503827635024
AT4G30530_at 11.724782499462 11.7705122929337 12.0408037071693 11.9027308392871 11.9148243564528 11.7086589777781 11.8882075210033 11.8372545491327 10.6377065121886 11.4773436366498 11.5922268282533 11.5738107913492 11.6431871239701 11.6071780701696 11.0695378766127 11.4886264712601 11.6820607388626 11.5789245338779 10.8589105054111 0.0752882499492183 0.0728059143789954 0.0730660342340245 0.0745071698947687 0.0740757757379574 0.0725207634213873 0.073085916943739 0.073468672958156 0.0808370611858733 0.0776007147645696 0.0767159718524436 0.0758027201651145 0.0725207634213873 0.0777930546710973 0.0776174338866699 0.0733717010029482 0.0774712913043091 0.0756391236791479 0.0746556737633751 4 4|0 +|/ 14920802 14922246 14921454.667 14920540 14922500 + gene protein_coding_gene FALSE TRUE AT4G30530.1 defense-related protein, putative similar to defense-related protein, putative [Arabidopsis thaliana] (TAIR:AT2G23960.1); similar to defense-related protein [Brassica carinata] (GB:AAK50344.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991) 0.31234454537512 3.65684061958395 0.00384235328051852 1 3.64486862477724 23.1088539790912 0.31234454537512 0.0445445863062665
AT1G02340_at 2.94315994845768 3.63197234797527 3.41121221039656 3.9887051757896 7.74363554747016 6.67974530952972 2.28197497328159 2.65364608666562 4.06263381923489 2.77276737679220 2.76133108406049 1.59798008565358 3.27772685828549 2.66890694796817 1.34103027352559 1.73211785397115 2.69803365187887 2.5729987926902 4.13227871674667 0.255759011501174 0.240472714620984 0.252543112305222 0.255501708203686 0.256294842549773 0.29100106154845 0.243668591766787 0.245554146408945 0.248076693354718 0.250969497111556 0.246620596653941 0.255564632470464 0.242882352247338 0.246901997314989 0.251000766328897 0.240486559289230 0.252243610187436 0.244648911409572 0.246662736101950 1 1 - 465941 467040 466305.909 465718 467844 - gene protein_coding_gene FALSE TRUE AT1G02340.1 HFR1 (LONG HYPOCOTYL IN FAR-RED); DNA binding / transcription factor Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1. Identical to Long hypocotyl in far-red 1 (bHLH-like protein HFR1) (Reduced phytochrome signaling) (Basic helix-loop-helix FBI1 protein) (Basic helix-loop-helix protein 26) (bHLH 26) (AtbHLH026) (Reduced sensitivity to far-red light) (BHLH26) [Arabidopsis Thaliana] (GB:Q9FE22;GB:Q9FZ26); similar to PIF3 (PHYTOCHROME INTERACTING FACTOR 3), DNA binding / transcription factor/ transcription regulator [Arabidopsis thaliana] (TAIR:AT1G09530.2); similar to transcription factor BHLH9-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19953.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99197.1); similar to Os05g0139100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054593.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.626754305473873 3.65265751600763 0.00387035454196331 1 3.63848505527578 7.16033594882683 0.626754305473873 0.249460714016997
AT4G24270_at 4.76790828608493 5.01194084473197 4.95503072746717 4.34127480113841 4.66810013007657 4.40908728001835 5.1429743420812 4.84237768126447 4.62563000473911 4.59403378400070 3.97675658049969 4.32301247756734 4.38445806867464 3.98690392020678 4.07988900114742 4.01034510056428 4.57103738230588 4.42899798472032 4.90509564851954 0.196503301663022 0.197433987630246 0.199917535921471 0.204137798905034 0.193765199707305 0.201959192282319 0.2027479413344 0.202286448261192 0.211616052406441 0.197476946179118 0.204499958174147 0.197113737370764 0.194034966464029 0.193765199707305 0.19734511624197 0.202002522205871 0.203643026795432 0.198922043233818 0.200348404772535 4 4|0 -|/ 12581817 12582845 12582256 12581611 12587394 - gene protein_coding_gene FALSE TRUE AT4G24270.1|AT4G24270.2 RNA recognition motif (RRM)-containing protein similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to Os08g0113200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060838.1); similar to hypothetical protein LOC558581 [Danio rerio] (GB:NP_001025289.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Lsm interaction; (InterPro:IPR008669); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to Os08g0113200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060838.1); similar to hypothetical protein LOC558581 [Danio rerio] (GB:NP_001025289.1); contains InterPro domain Lsm interaction; (InterPro:IPR008669); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.41800256757892 -3.6518060245374 0.0038760800877999 1 3.63718541069862 9.23155086671484 -0.41800256757892 0.133341312046974
AT1G03470_at 2.49870456768257 2.91265299474509 3.24482313567426 3.08959711697025 3.17458537973198 3.54299644642139 2.34448614874329 2.11176199314091 2.60652901250417 3.2185031779005 2.68855356282791 2.6557687139236 2.86944299459985 2.81690800204575 2.76645054955777 3.15792114111558 2.89146236192653 2.41698945475091 2.6342928446832 0.193805447084262 0.200100840074648 0.193216112438031 0.196632157790128 0.195554314516298 0.200595649680333 0.191933413510028 0.199418169471008 0.193077747562421 0.190972150049965 0.192812802730900 0.192231534048424 0.196300837751081 0.188002199310663 0.193621762137428 0.191305659066079 0.190647702565186 0.188002199310663 0.191782070041906 1 1 - 866225 866782 866560.636 865915 867733 - gene protein_coding_gene FALSE TRUE AT1G03470.1|AT1G03470.2 kinase interacting family protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT2G47920.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82954.1); similar to Os07g0666600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060570.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) 0.379630589759518 3.65159369873443 0.00387750915681398 1 3.63686132206265 5.66630702753344 0.379630589759518 0.107424393637969
AT1G65860_at 8.79055189337322 9.4640972800393 8.4667706371404 8.473757426476 9.39475005337468 8.97603067891517 9.61644092149812 9.68429373445414 6.31136185852731 8.97447162477445 9.5202998435047 9.44255975941748 9.38121564295357 9.6866941385644 7.69832517732888 9.24857120701267 9.55470361784862 9.51295910078008 8.24981907546266 0.214713818906692 0.204794347150704 0.199954953951726 0.200917074719628 0.206845211209625 0.199922599690658 0.208354558859665 0.206361531765667 0.251542940969858 0.208314211895216 0.204720796763428 0.209683373369615 0.205978355679632 0.205852017723470 0.225120991710176 0.202740551221769 0.201020019344609 0.223125686217785 0.221194413572947 1 1 - 24502874 24503621 24503194.364 24502729 24506408 - gene protein_coding_gene FALSE TRUE AT1G65860.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62570.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62560.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62540.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.424714891486762 3.64969910180417 0.00389028492942294 1 3.63396923769311 17.6587783684161 0.424714891486762 0.137754351884421
AT2G33740_at 6.9179536649377 7.02197286114321 7.30932510241712 7.46423402809798 7.7982449827555 7.58244979959843 6.49177538461872 6.96625051020763 6.6899170026334 6.7028498509523 7.12003062032496 6.47024175486887 7.1242494749424 7.05704829049162 6.69098485041476 6.88891771561906 6.80472043027497 6.38161323780886 6.94292575173354 0.205641111636301 0.198953689495079 0.209503599823282 0.202980760809085 0.205186095019235 0.208722553642818 0.198491144462896 0.196590969457967 0.205962240209509 0.198845456091750 0.193878310053686 0.199008629274831 0.193878310053686 0.209759967454956 0.199112863854818 0.194294735651097 0.217153631945254 0.195596999703240 0.193878310053686 2 2|0 +|/ 14276674 14278533 14277358.333 14276657 14278799 + gene protein_coding_gene FALSE TRUE AT2G33740.1|AT2G33740.2 CUTA encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast. Identical to Protein CutA, chloroplast precursor (Copper-binding protein CutA) (AtCUTA) (CUTA) [Arabidopsis Thaliana] (GB:P93009;GB:Q9C5X6); similar to Os10g0378300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064480.1); similar to Protein CutA, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66054.1); contains InterPro domain CutA1 divalent ion tolerance protein; (InterPro:IPR004323) 0.363868484030275 3.64955626287048 0.00389124988968488 1 3.633751179348 13.9919207910302 0.363868484030275 0.0958090033143642
AT4G31430_at 5.13249337774511 5.11974188961583 4.93828715750936 4.90247921457934 5.84877460013709 5.96007520910694 4.68458668163963 4.31948879614175 4.43372557472810 4.23088145167414 4.11060235422898 4.39961909834102 4.16083776018276 4.24145682307495 4.65314657266015 4.94838702494916 5.00150992752082 4.77103545452605 4.75705804309521 0.220251094885126 0.216084655300003 0.222746171689154 0.222940916808576 0.221470184711235 0.230867192129125 0.222086765764833 0.223047213268158 0.226035075743983 0.216084655300003 0.216382348828571 0.220899575446412 0.228411883105843 0.216084655300003 0.216084655300003 0.224571893944963 0.232635493561632 0.222119371587603 0.223180002486836 4 4|0 +|/ 15250806 15251762 15251331.2 15248462 15252843 + gene protein_coding_gene FALSE TRUE AT4G31430.1|AT4G31430.2|AT4G31430.3 similar to nucleoporin-related [Arabidopsis thaliana] (TAIR:AT5G20200.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80407.1) 0.33013118974197 3.64883705304 0.0038961123254134 1 3.63265319728228 9.6180972325267 0.33013118974197 0.0663792893104109
AT1G69910_at 3.43192110443267 3.9865943030986 2.98614738753266 2.77709453395276 3.71541117512316 3.08180006312968 3.59533799002286 3.59575273791295 4.12466992376125 3.8999366192496 3.94891984132217 3.81073274801516 3.37903854139472 3.50450573165262 3.69552057785943 3.41607430666268 3.31372091781287 3.67554206146023 3.88514530257784 0.204118370641912 0.193736194272681 0.193736194272681 0.198272717998463 0.201775008745246 0.194588870577035 0.195911560505183 0.19945447091942 0.199291524471556 0.202667001983201 0.196064787677530 0.193736194272681 0.199892896506026 0.197780484163711 0.193736194272681 0.197811113962078 0.201555912749933 0.201069225692344 0.200543130886466 1 1 + 26335264 26335690 26335475.273 26333777 26335929 + gene protein_coding_gene FALSE TRUE AT1G69910.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G18390.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82689.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.444599342511309 -3.64792549799061 0.00390228417987701 1 3.63126148938619 7.17771947321836 -0.444599342511309 0.150152090090699
AT3G55890_at 2.48020519171962 3.19157432436559 4.25590910471326 4.26011079920647 4.43343685825904 3.20854020720412 2.28570600435124 2.38656496929469 2.04325815872684 1.93611819493796 1.5764003017108 1.50537927721818 2.28047443802411 1.96079581149844 1.36836966326606 2.09086313129735 2.14586821101921 1.75636620258936 2.17664146373579 0.239146384393893 0.231660397307440 0.243671555307474 0.238533122299776 0.236449704096689 0.240602230962963 0.228860329858109 0.238436390115868 0.231570452796233 0.229770585220294 0.234162429173853 0.228860329858109 0.228860329858109 0.234177840999250 0.228860329858109 0.230525590434134 0.228860329858109 0.228860329858109 0.236154488455413 3 3|0 +|/ 20751918 20752799 20752281.875 20751796 20752981 + gene protein_coding_gene FALSE TRUE AT3G55890.1 yippee family protein Identical to Protein yippee-like At3g55890 [Arabidopsis Thaliana] (GB:Q9LY56); similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT2G40110.1); similar to Protein yippee-like (GB:P59234); similar to Os03g0698500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050981.1); contains InterPro domain Yippee-like protein; (InterPro:IPR004910) 0.618522655178672 3.64675812746718 0.00391020281658468 1 3.62947908409273 5.25654121674499 0.618522655178672 0.245750298763546
AT2G33210_at 7.61917844615739 7.53841871891219 7.89581359246291 7.32636943616543 6.29469217585135 6.82445301275415 8.02169669778852 7.89563745737332 6.1069984962206 6.52363620985365 5.77777431959089 6.90987670025717 5.75658317875948 5.80018790671246 7.12012672501626 5.90597425653593 6.59706805738473 6.00809107046898 6.56212587490984 0.197243525337552 0.197243525337552 0.198342231480286 0.204519474290096 0.201097483204327 0.197470304940389 0.203350809296383 0.202308854852295 0.212152556605616 0.199382516720076 0.208859003071245 0.197243525337552 0.202341345537342 0.200221213559638 0.203445997660602 0.200760664661533 0.207237960037478 0.210274542123196 0.201082896606193 2 2|0 -|/ 14082223 14083155 14082697.222 14081984 14085808 - gene protein_coding_gene FALSE TRUE AT2G33210.1 chaperonin, putative Identical to Chaperonin CPN60-like 1, mitochondrial precursor (HSP60-like 1) [Arabidopsis Thaliana] (GB:Q8L7B5;GB:O49314); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to HSP60 (Heat shock protein 60), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G23990.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) (GB:Q05046); similar to Chaperonin CPN60, mitochondrial precursor (GB:P35480); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.423263679618341 -3.6466023433727 0.003911260801728 1 3.62924121306186 13.7430560107675 -0.423263679618341 0.137066095261831
AT4G33910_at 7.99901179132472 8.14971719524682 8.23706367918068 8.48852537892439 8.6738935786869 7.7272294578471 7.43280457081997 6.78597298818244 7.39631459861884 7.1571112911798 7.63067720620446 7.76520478880582 7.33077392395992 7.97098530735541 7.0166445651311 7.8605632976601 7.6421306057627 7.93253464259524 7.20313548352099 0.193911015818060 0.18384507014652 0.193255463495417 0.187461763314035 0.198634647954031 0.198626632833611 0.197325399863671 0.190105381318549 0.20203058848329 0.193954869259527 0.185078055594519 0.185246523121279 0.186326875357398 0.197500465602165 0.195508320297036 0.184713967825902 0.204675677699401 0.192560965842695 0.192996619132634 4 4|0 -|/ 16256996 16257942 16257448.889 16256738 16258776 - gene protein_coding_gene FALSE TRUE AT4G33910.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G23096.1); similar to prolyl 4-hydroxylase [Nicotiana tabacum] (GB:BAD07294.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.540651777505373 3.64636055126893 0.0039129034828617 1 3.62887200874448 15.3847155383387 0.540651777505373 0.204798270477042
AT1G03020_at 3.71975435903022 3.9410753109461 6.1621430183749 6.83583542793803 5.97474893399937 6.5180834533823 7.61578938256071 8.31762208258027 5.33942678064471 4.81304946241809 5.17255081566907 3.8975190775225 6.47651170928857 6.08550407102011 3.74078498541904 6.16298499367174 7.8546748089527 4.5857063444105 4.60809921188799 0.220989062230123 0.216431114410418 0.219811328151953 0.220844464522357 0.224674086981688 0.215937253491252 0.226968504838966 0.228878914363678 0.226609952956876 0.220223978815619 0.220474479842113 0.220792935901195 0.215937253491252 0.215937253491252 0.227717502138873 0.216340165298686 0.217487871751079 0.222443642115994 0.222937232428135 1 1 - 698233 698453 698346.455 698207 698515 - gene protein_coding_gene FALSE TRUE AT1G03020.1 glutaredoxin family protein Identical to Putative monothiol glutaredoxin-S1 (AtGrxS1) (GRXS1) [Arabidopsis Thaliana] (GB:Q9SA68); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G62930.1); similar to Fgenesh protein 66 [Beta vulgaris] (GB:ABD83292.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.525490103535836 3.64583144164737 0.00391650061830295 1 3.62806406268761 11.3442422056321 0.525490103535836 0.196599997086819
AT2G42310_at 9.44558117784263 9.37512614204505 8.92044365182943 9.09587251937118 9.29260389187449 8.98809748648991 8.3799760683866 8.55471337285966 8.27623933982312 8.07932064505238 8.88084947502708 9.03940264065962 8.751361335863 8.82472303536898 9.06140846862004 8.63577792584585 8.44925527575795 8.6022267172617 8.39863211748634 0.151512275073578 0.152712334938964 0.152304125196445 0.146551831049847 0.150394431507014 0.156259205943402 0.139271210557102 0.146898995597313 0.150821290907251 0.145681394164881 0.140317721683399 0.138520396221744 0.140853713346910 0.141977943740576 0.139805137346870 0.14254174251294 0.142934389287657 0.143835098737936 0.139729515994724 2 2 + 17632343 17632645 17632475.273 17632290 17632967 + gene protein_coding_gene FALSE TRUE AT2G42310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57785.1); similar to Os09g0487500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063525.1); similar to BAC19.9 [Lycopersicon esculentum] (GB:AAG01124.1) 0.332316719477177 3.64402811005902 0.00392878616493342 1 3.62531015916595 17.5225632772146 0.332316719477177 0.0690044434617352
AT2G29540_at 4.19729441920045 3.78857419190568 4.58130679234029 4.2110465524633 3.95913961690334 3.57346851339711 3.13228986903521 3.54285940419678 3.2484995420253 3.28225562167484 3.58776976378513 3.78559537754571 3.36538361123786 3.72306784681018 4.00349573663475 3.93324088295595 3.9175364075757 3.2553302803214 3.27499344276272 0.198318393772471 0.198355150649643 0.203473105450386 0.200798951458286 0.199838715911146 0.203745959818101 0.201769999140387 0.204941076200445 0.199889448229999 0.206818376550142 0.198805323720726 0.197468844554239 0.201459359433888 0.204043309757209 0.203319746269818 0.196422987911702 0.206454930989654 0.195002383995462 0.198759340402539 2 2|0 +|/ 12649804 12650866 12650259.75 12649598 12651021 + gene protein_coding_gene FALSE TRUE AT2G29540.1|AT2G29540.2|AT2G29540.3 ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit); DNA binding / DNA-directed RNA polymerase|ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit) RNA polymerase I(A) and III(C) 14 kDa subunit similar to ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G52090.1); similar to Os12g0194700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066351.1); similar to polymerase (RNA) I polypeptide D, 16kDa [Bos taurus] (GB:NP_001069612.1); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain DNA-directed RNA polymerase, 13 to 16 kDa subunit; (InterPro:IPR008193); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261)|similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA92074.2); similar to Os12g0194700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066351.1); similar to Os11g0218100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067515.1); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261) 0.42191525861443 3.64373738144040 0.00393077052896843 1 3.62486614831204 7.35575259851992 0.42191525861443 0.136423110080937
AT2G18180_at 1.90844174975212 1.72662620287333 1.50335808314167 1.8205834668599 1.50827632145845 2.02916553252449 2.31944468752614 2.29669347993868 2.66121403064256 2.5093252222211 2.6909342969285 2.65838070989992 1.67719212552989 2.0726755428785 1.88080668491459 1.98783224520096 2.16862818984668 2.30878152351208 2.6251207706469 0.219235796535620 0.225360452833195 0.222100807380626 0.21778401733627 0.21778401733627 0.226969729842236 0.224282340503527 0.21778401733627 0.239475612115454 0.222902828732357 0.21778401733627 0.218938498172979 0.222307969787888 0.229171808567583 0.224408375302225 0.226847481521091 0.223560710302638 0.225831047105127 0.226539906173316 2 0|2 /|- 7918164 7918684 7918456 7918136 7920777 - gene protein_coding_gene FALSE TRUE AT2G18180.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G36490.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE84078.1); similar to phosphatidylinositol transfer-like protein II [Lotus japonicus] (GB:AAK64378.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.382677552678869 -3.64361511534673 0.00393160536330903 1 3.62467941651483 4.27867731851388 -0.382677552678869 0.110203626459319
AT2G33610_at 3.82120961652917 4.14765957923889 4.00606483534448 3.97091187141224 5.44301983299588 5.1631554918 3.99059122437012 4.4221038277149 4.17204389588127 3.38362977563093 4.00337316929145 4.44580915782359 4.10069136486744 3.81021063154493 3.27957493814967 4.10421446030397 4.27049021949161 4.21449335400769 3.92440826791461 0.248910201408854 0.24852167099598 0.257737508759788 0.258018325913526 0.256226031963240 0.260034516679043 0.255661640762418 0.251476248506560 0.261145336701139 0.24852167099598 0.252410030025685 0.24852167099598 0.258356035119920 0.250203648985466 0.251714238357923 0.24852167099598 0.250351309735152 0.254704050218796 0.249069541719676 2 2|0 +|/ 14236980 14237716 14237281.778 14236048 14238364 + gene protein_coding_gene FALSE TRUE AT2G33610.1 ATSWI3B (Arabidopsis thaliana switching protein 3B); DNA binding Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously. similar to ATSWI3A (Arabidopsis thaliana switching protein 3A), DNA binding [Arabidopsis thaliana] (TAIR:AT2G47620.1); similar to SWIRM; Lambda integrase-like, N-terminal; Homeodomain-related [Medicago truncatula] (GB:ABE82598.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.376155064025495 3.64236484803421 0.00394015271042933 1 3.6227698424778 8.2982401057977 0.376155064025495 0.105596317376122
AT2G15570_at 6.8785049891906 7.39836056186066 7.41189452571869 7.33776771878654 7.05839477106097 7.67179870795102 5.47392703208303 6.28279849644965 7.62692876693023 6.68578122898234 7.8527020514225 7.09018631834631 7.41161248723629 7.47562695109396 7.08221289403099 7.3331861932209 6.41494360791333 7.26716723344878 6.83419925819819 0.176569868154083 0.173357340078434 0.171447978886126 0.172981227928332 0.169658549352246 0.185049703766192 0.185191369942524 0.170735098695417 0.174923684247824 0.175289093739558 0.172542876434924 0.178910191458672 0.174347545613213 0.171501185730324 0.171509096530569 0.167452174205170 0.169308785336484 0.180545885053682 0.177281347323181 2 2|0 -|/ 6798657 6799920 6799017.556 6798372 6800015 - gene protein_coding_gene FALSE TRUE AT2G15570.1 ATHM3 (Arabidopsis thioredoxin M-type 3); thiol-disulfide exchange intermediate chloroplast protein similar to prokaryotic thioredoxin. Identical to Thioredoxin M-type 3, chloroplast precursor (TRX-M3) [Arabidopsis Thaliana] (GB:Q9SEU7;GB:Q42072;GB:Q9SKS6); similar to ATHM4 (Arabidopsis thioredoxin M-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G15360.1); similar to putative thioredoxin m2 [Pisum sativum] (GB:CAC69854.1); similar to OSIGBa0160I14.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67005.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.526775563351098 3.6396826274059 0.00395855422759193 1 3.61867262231025 14.0841430846173 0.526775563351098 0.197788840800837
AT1G14350_at 2.93928033188917 2.90636868925439 3.1225710644439 3.22702924310054 3.40429414914976 3.65278536778729 3.57260133505187 2.9725663859513 2.69590930127776 2.64452825305572 3.49183559772326 3.20910990209045 3.08230499870072 3.35912405929913 3.32684419394334 2.66952275242304 3.27797191800613 3.20614893325163 2.70464438422183 0.200407480477328 0.202291566502569 0.212824649156597 0.20745008452065 0.200407480477328 0.216896659074682 0.210230028496352 0.204599389959595 0.214372539727738 0.208277201114934 0.208810754356189 0.213159911799085 0.202730855121667 0.200757445898595 0.201581640403421 0.201195824609466 0.213532812082615 0.205628272608091 0.217610762164682 1 1|0 +|/ 4909788 4910618 4910340.9 4907948 4911163 + gene protein_coding_gene FALSE TRUE AT1G14350.1|AT1G14350.2 FLP (FOUR LIPS); DNA binding / transcription factor|FLP (FOUR LIPS) Encodes a putative MYB transcription factor involved in stomata development, loss of FLP activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants with MYB88. similar to MYB88 (myb domain protein 88), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G02820.2); similar to putative Myb-like DNA-binding protein [Solanum demissum] (GB:AAT40484.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.387564792747484 3.63919714359102 0.00396189437978827 1 3.61793093856515 6.1669629578026 0.387564792747484 0.113977815614894
AT3G20960_at 2.08070492475275 2.03912606663927 2.18114826542954 2.64149138381954 2.20129306131319 2.01862183262805 1.06787436369833 0.750182718917744 1.09870121284671 0.871986748348588 0.807389657589887 1.09048596399870 1.27639047022934 1.16282839356731 1.14346787199813 1.01471780755019 1.78777617164932 1.50818942843789 1.80374046871044 0.235382385330808 0.230342758302219 0.227318165854032 0.236132109712706 0.226387266315642 0.230462892573082 0.228662786092813 0.226387266315642 0.227631513926610 0.236123014352580 0.241307395921242 0.23551154136861 0.229551329839910 0.229329087061533 0.237275330626980 0.230481458465455 0.2373128664217 0.228214766330380 0.240669527732265 3 3 + 7346442 7346996 7346834.636 7345442 7347110 + gene protein_coding_gene FALSE TRUE AT3G20960.1 CYP705A33 (cytochrome P450, family 705, subfamily A, polypeptide 33); oxygen binding member of CYP705A similar to CYP705A18 (cytochrome P450, family 705, subfamily A, polypeptide 18), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20090.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.370964763977284 3.63819932364517 0.00396876856141417 1 3.61640646748229 3.11357959244789 0.370964763977284 0.102078981510176
AT1G07990_at 7.45667692486677 7.36893008618857 7.98427601488168 8.05707066873174 7.80945487080732 7.61131880603344 6.81498660784739 7.13478252732552 7.00404877716161 6.81535826480645 6.73981390195356 6.88586426250432 7.3054652452218 6.94244125910767 6.42628288363243 7.42433016809043 7.18777336851184 6.61685734438644 7.03525724873829 0.192120935466797 0.177851489876899 0.181739240676472 0.178690462756198 0.192584893741857 0.187756528753247 0.187751543917978 0.187317901896374 0.197630089639379 0.181197884555313 0.183464490204755 0.182987517197650 0.181407903819118 0.183052297009371 0.191507727803128 0.179701519772041 0.184965873439934 0.182796160292644 0.176652453840007 1 1 + 2482436 2482793 2482556.545 2477154 2483135 + gene protein_coding_gene FALSE TRUE AT1G07990.1 SIT4 phosphatase-associated family protein similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT3G45190.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G30470.1); similar to Os05g0592500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056496.1); similar to H0714H04.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66980.1); similar to OSJNBa0058K23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAD41753.2); contains InterPro domain SIT4 phosphatase-associated protein; (InterPro:IPR007587); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.330617422081884 3.63616981882024 0.00398278821597783 1 3.61330545160816 14.4760162222077 0.330617422081884 0.0680274118590842
AT4G40020_at 1.36649979834013 1.35340927207227 1.50793111545063 1.89520503031037 1.26382567579707 1.23382023970326 1.10565570637942 1.19368025609441 1.35655609156012 1.08747236801763 1.57887329244718 1.5490973217211 1.03870391747233 1.51626194592336 1.66242749543264 1.57968709005495 1.62311382388263 1.57945606254745 0.776235890087426 0.198409558823500 0.194117104590277 0.197149505155956 0.199391851971737 0.194324958504229 0.204147205818197 0.195902462855837 0.196546580621837 0.201432025137501 0.203346118540156 0.203088488815960 0.195401670802952 0.203427099392884 0.1993516114138 0.197359654484075 0.19983470913166 0.202354998551147 0.191611812657842 0.196180711821661 4 4 - 18553493 18553968 18553750 18553447 18555294 - gene protein_coding_gene FALSE TRUE AT4G40020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16730.1); similar to Os04g0450900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052943.1); similar to Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE94710.1); similar to H0818E04.23 [Oryza sativa (indica cultivar-group)] (GB:CAH67106.1); contains domain MYOSIN HEAVY CHAIN-RELATED (PTHR23160) 0.331457712945295 3.63507876880243 0.00399034620516644 1 3.61163817819595 2.65969042105524 0.331457712945295 0.0689620326437125
AT1G24070_at 0.694951156788662 0.641109870626945 0.539532326381468 0.466259650693616 0.428446370584962 0.674424186407451 0.387464404870108 0.164131878081912 0.102471839701119 0.335254252348909 0.480307840774808 1.25842868384188 0.74765113286579 0.418167396027018 1.34605808245013 0.8171039392725 0.357630964334953 0.606888443307978 0.0561863220718223 0.218928431517235 0.213470486173352 0.213834770007549 0.221927810885665 0.210417212895691 0.217555860105923 0.210417212895691 0.218840357306881 0.210417212895691 0.214683016620072 0.212778802617829 0.210417212895691 0.215460315658033 0.213103502912489 0.216347783593227 0.219042492852449 0.223479006025329 0.219451789458834 0.213510531582204 1 1 - 8516450 8517058 8516836.091 8516227 8519723 - gene protein_coding_gene FALSE TRUE AT1G24070.1 ATCSLA10 (Cellulose synthase-like A10); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA11 (Cellulose synthase-like A11), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16190.1); similar to ATCSLA03 (Cellulose synthase-like A3), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G23480.2); similar to glycosyltransferase 5 [Ipomoea trifida] (GB:AAQ62571.1); similar to glycosyltransferase 1 [Ipomoea trifida] (GB:AAQ62570.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.3223216974552 3.63276983463654 0.00400638961833417 1 3.60810938510133 0.958873496421057 0.3223216974552 0.0596098018215101
AT3G61390_at 1.96778498193027 1.95037393891623 2.77911758913572 2.40463515024102 1.86386509458109 2.20060570610456 1.41902703463718 1.48545854248408 1.70033125214515 1.90360305638891 1.56413167789776 1.61341886189188 2.27445663810236 1.37230817420279 1.95752731557025 1.56292065918367 1.6680737762232 1.72014734125085 1.25081202920468 0.203615709877881 0.20673676442268 0.211305044443358 0.219472968977861 0.210122281160803 0.214976819143750 0.206279169234242 0.202064454042623 0.211565919664057 0.202691832241838 0.202064454042623 0.202064454042623 0.20521263150022 0.20498309883586 0.204275449641805 0.202064454042623 0.207592213000315 0.211093248043015 0.203515881766406 3 3 + 22728703 22729210 22729049.909 22727328 22729348 + gene protein_coding_gene FALSE TRUE AT3G61390.1|AT3G61390.2 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45920.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains domain no description (G3D.3.40.50.1420); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402)|similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45920.1); similar to putative arm repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAK43506.1); similar to Os10g0552400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065331.1); contains InterPro domain U box; (InterPro:IPR003613) 0.352384518408879 3.63258381169502 0.00400768507400736 1 3.6078250571131 3.67629442214706 0.352384518408879 0.0879600658183752
AT2G16920_at 4.7169563251268 4.77239258207545 4.63583846169335 4.62222989446181 4.77005689316825 4.47672943531313 4.86089643575 5.08714523909406 4.96182996529435 4.65140769000691 4.24193939167547 4.48185110725725 4.2320637671936 4.28166721561036 4.48880042275227 4.58374862560179 3.81729612633075 4.27024166966858 4.54948066863883 0.161940509667861 0.168346195037821 0.164251210265578 0.163773462054944 0.164025843587067 0.170617052396930 0.17656747241747 0.168177988513248 0.168390977170894 0.168389016120067 0.163522474309367 0.170834699194641 0.165009178858939 0.174382848809076 0.165159176955312 0.170822256381067 0.173170508786569 0.166092244074087 0.166407207306157 2 0|2 /|- 7341692 7342235 7341945.1 7341308 7346249 - gene protein_coding_gene FALSE TRUE AT2G16920.1 UBC23 (ubiquitin-conjugating enzyme 22); ubiquitin-protein ligase similar to PHO2/UBC24 (PHOSPHATE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G33770.1); similar to Os01g0125900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041894.1); similar to P0044F08.17 [Oryza sativa (japonica cultivar-group)] (GB:BAB21187.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -0.327169520785605 -3.63236067475923 0.00400923955988632 1 3.60748399704796 9.253084232706 -0.327169520785605 0.0648638545676393
AT4G26980_at 5.64225264423216 5.41324701403505 5.94825511443983 5.57769114835699 6.4053940901374 6.25887185167103 5.59270473485821 5.51792355878897 5.3032216816813 4.72352792634301 5.05466099565925 4.66850128589614 4.86128657942441 5.28406564506306 4.93788723680531 5.24316804341547 5.32378429466606 4.88131357320013 4.52536962592360 0.215192168366030 0.205601555293722 0.212494983901599 0.208311213417140 0.21352335986137 0.218409402095777 0.206201288548417 0.211422937177068 0.206163417235665 0.201024502590519 0.206173913039409 0.203835262320374 0.202552864957103 0.204270944752516 0.208147523460239 0.20129284663227 0.205313199916526 0.214022793079126 0.201024502590519 4 0|4 /|- 13548824 13549459 13549147.444 13548552 13550728 - gene protein_coding_gene FALSE TRUE AT4G26980.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45482.1); similar to Os06g0679700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058370.1); contains domain no description (G3D.3.80.10.10); contains domain F-BOX/LRR PROTEIN-RELATED (PTHR23125:SF67); contains domain RNI-like (SSF52047); contains domain F-BOX/LEUCINE RICH REPEAT PROTEIN (PTHR23125) 0.343574054311486 3.63105825353754 0.00401832530834856 1 3.60549316625891 10.7358124536061 0.343574054311486 0.080581473331892
AT2G05760_at 1.62776551930445 2.27616450268454 2.30263266936865 2.26091311330204 2.78108448978652 2.23857243864054 2.31655384090998 1.94841682704733 1.55026263396471 2.01364756839073 2.78943288820886 2.75092298503816 2.60839097974703 1.99177511852770 2.2705400265996 2.34605383106507 2.53622118146588 2.29227617517778 2.09168800768265 0.192436491518535 0.189482580475362 0.191433452868621 0.187926026508049 0.190432832906007 0.183712938898541 0.181743935286342 0.182955005161840 0.186987910321817 0.197139725263329 0.188153522495407 0.182347670941065 0.184113792206613 0.186339845524135 0.191455840039314 0.183861411118049 0.192347509754768 0.1857041990377 0.192201230359296 2 2 + 2182872 2183663 2183317.091 2180916 2183901 + gene protein_coding_gene FALSE TRUE AT2G05760.1 xanthine/uracil permease family protein Identical to Nucleobase-ascorbate transporter 1 (AtNAT1) (NAT1) [Arabidopsis Thaliana] (GB:Q9SHZ3); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G34190.1); similar to putative permease 1 [Oryza sativa (japonica cultivar-group)] (GB:BAB61205.1); similar to putative permease [Gossypium hirsutum] (GB:AAT64019.1); similar to putative permease 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD03486.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.458288875085298 3.62922875409712 0.00403112385860395 1 3.60269635404579 4.3857134509179 0.458288875085298 0.159736668234804
AT1G28440_at 9.1308213985775 9.50076952052399 8.93772199496647 8.96942608886393 9.14463563527566 9.11598802316954 9.36518072611044 9.76694060208731 9.66848459787466 9.43221214159267 9.4736722261728 9.51298255181237 9.36679317824476 9.33170556607668 9.19789972837817 9.22620049465378 8.4138918006646 9.17463488872585 9.5021939935979 0.122352501364944 0.118024607534698 0.120804679932876 0.122642884366668 0.123711440504873 0.119978746207288 0.124308568092739 0.118025240791760 0.119319893388903 0.121183057079509 0.118869348162715 0.120004359812426 0.122179322152544 0.119454184172159 0.122257464342041 0.120066065494818 0.123575700315374 0.127750924582984 0.121848614554406 1 1 + 9999317 10000119 9999765.727 9996810 10000433 + gene protein_coding_gene FALSE TRUE AT1G28440.1 HSL1 (HAESA-LIKE 1); ATP binding / kinase/ protein serine/threonine kinase similar to HAESA (RECEPTOR-LIKE PROTEIN KINASE 5), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G28490.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL2 (HAESA-LIKE 2), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65710.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28309.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28308.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28307.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.360529741468266 -3.62897832735349 0.00403287902657338 1 3.60231349081151 18.6146952313783 -0.360529741468266 0.0948014939564536
AT1G49160_at 5.33959836197921 5.45175033197139 4.51313506438964 4.42261764403091 5.37231600874995 5.66814506481343 5.18545090152526 4.13541791192328 3.33378505915855 4.62344298981494 3.34754368310754 3.88372613370365 3.09881175614288 3.74747222086189 2.36794784368038 2.21916973826639 3.42281599286765 3.13534410723869 4.47022156792639 0.278452773793982 0.287891980413495 0.272460185637311 0.272604993561626 0.28048748167784 0.275733739557795 0.282545687551477 0.284936890248442 0.28131308713585 0.279096735613976 0.282844692794923 0.272056483438584 0.272056483438584 0.272056483438584 0.284350448077146 0.287173640289135 0.281178228338277 0.28299615207609 0.272056483438584 1 1 - 18183327 18183816 18183494.455 18182972 18186059 - gene protein_coding_gene FALSE TRUE AT1G49160.1|AT1G49160.2 WNK7 (Arabidopsis WNK kinase 7); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its similar to WNK6 (Arabidopsis WNK kinase 6), kinase [Arabidopsis thaliana] (TAIR:AT3G18750.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83755.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to WNK6 (Arabidopsis WNK kinase 6), kinase [Arabidopsis thaliana] (TAIR:AT3G18750.1); similar to protein kinase [Fagus sylvatica] (GB:CAC09581.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.511815101251733 -3.62847532598633 0.0040364067981404 1 3.60154446010919 8.65872248123135 -0.511815101251733 0.190427419055409
AT3G13450_at 5.77229481973915 5.93391794789386 5.16883402368108 5.13420285468304 7.4100960582281 6.54094964187093 4.06758691645402 4.16540921653954 5.0648527401025 4.62755893832678 4.74313716118346 4.83560759194709 4.26427457439925 4.2876144691035 5.21111677887186 4.37392856080278 4.01190941031982 4.89779375368324 4.58637981819478 0.259287927542413 0.243849009885739 0.244873700658632 0.240335067374280 0.244902981979168 0.261097310405454 0.242466870843300 0.239819322191911 0.23501131623619 0.241126327695080 0.23501131623619 0.238341357350457 0.235948731964024 0.241225973251352 0.23501131623619 0.23501131623619 0.240894271112739 0.244078193082187 0.239793263380314 3 3|0 -|/ 4382479 4383444 4382908.8 4382205 4384443 - gene protein_coding_gene FALSE TRUE AT3G13450.1 DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) branched chain alpha-keto acid dehydrogenase E1 beta similar to BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G55510.1); similar to 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Dictyostelium discoideum AX4] (GB:XP_647496.1); similar to Os07g0170100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058989.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) 0.448647020728337 3.62843756076082 0.00403667179081793 1 3.60148672036078 10.1930464114263 0.448647020728337 0.154038681915908
AT4G26860_at 8.74074162306619 8.75224756433867 8.85710247119206 8.81511036488902 9.12288970782795 8.62674867445414 9.85664743934904 10.0610933249238 9.91397099123164 9.87902160346123 9.6192977446751 9.4644292955272 9.41620077169406 9.81815236044625 9.43383954169534 10.1285889997497 9.41157031602915 9.53663717758642 9.67608092160115 0.155346659690741 0.146406220522234 0.15055733866707 0.143530500152702 0.146738614628943 0.151481864497728 0.150474172991206 0.151784935718854 0.147125428354243 0.144257315377446 0.145855842093344 0.142142889706014 0.140804504019052 0.141955929233294 0.147669207256184 0.142694465839799 0.151776892993917 0.138019126811112 0.143309299896261 4 4|0 -|/ 13503322 13504539 13503965.8 13503092 13504786 - gene protein_coding_gene FALSE TRUE AT4G26860.1 alanine racemase family protein similar to alanine racemase family protein [Arabidopsis thaliana] (TAIR:AT1G11930.2); similar to Os05g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054662.1); similar to Proline synthetase co-transcribed protein (ISS) [Ostreococcus tauri] (GB:CAL50357.1); contains InterPro domain Alanine racemase, N-terminal; (InterPro:IPR001608); contains InterPro domain Protein of unknown function UPF0001; (InterPro:IPR011078) -0.358327331417281 -3.62760382488842 0.00404252655747268 1 3.60021197145259 18.8173796619335 -0.358327331417281 0.0931686466679376
AT1G15550_at 6.31268337248412 6.87094243591183 6.02554407224097 6.12817261361397 7.17256708639546 6.45340200509534 6.11037101075525 6.47586733131203 4.30607674348061 6.09341803532995 4.51324801025243 5.45830578877433 4.18773959895005 3.45099505938801 5.54188449893996 4.39846042991139 3.14764619934369 3.67355904367748 5.35808316940963 0.27565099133916 0.272584973035763 0.27371796138971 0.278103277232126 0.26937876828484 0.27334070222238 0.268342267177713 0.274169026189139 0.276319704791033 0.266792536716146 0.273039537728844 0.266027681301068 0.27211155890682 0.279720111018864 0.271271092148083 0.271100703550428 0.276414567789469 0.291076254094075 0.267321758352577 1 1 - 5344643 5345027 5344814 5344473 5346161 - gene protein_coding_gene FALSE TRUE AT1G15550.1 GA4 (GA REQUIRING 4); gibberellin 3-beta-dioxygenase Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Identical to Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15) (Gibberellin 3 beta- hydroxylase 1) (GA 3-oxidase 1) (AtGA3ox1) (GA4) [Arabidopsis Thaliana] (GB:Q39103); similar to GA4H (gibberellin 3 beta-hydroxylase), gibberellin 3-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G80340.1); similar to (GB:BAD91162.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.476795373682385 -3.62735080851288 0.00404430505296247 1 3.59982510467263 11.2181966466735 -0.476795373682385 0.170699963690508
AT1G26360_at 0.564430100348567 0.198189403194011 0.154582834573692 0.249255887490897 0.026622167258935 0.0739787070851968 -0.0579944100675068 0.459291040002071 0.60161577777126 0.693901726498354 0.116060117923444 -0.614018624106672 0.0141777372632343 0.126800286020618 0.411991696553007 0.341793403679917 0.491953108333358 -0.210752443177255 0.758124385794923 0.288157387965198 0.249250753715052 0.272580904659216 0.263194418848879 0.265447395619050 0.249250753715052 0.257619079425193 0.263133458944403 0.264787625081499 0.296162963363147 0.264675434106740 0.276096779013744 0.267487169244669 0.269069983141874 0.280076599206092 0.274440570646068 0.255978784956733 0.278555088848274 0.283221006791813 1 1 - 9119041 9119237 9119117.25 9118935 9121204 - gene protein_coding_gene FALSE TRUE AT1G26360.1 SP1L1 (SPIRAL1-LIKE1); hydrolase SPIRAL1-LIKE1 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. GUS expression was detected only in pollen; however, no endogenous transcript was found. similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G69240.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.382332885322039 -3.62698227242948 0.00404689700004853 1 3.59926159374678 0.593193444735425 -0.382332885322039 0.111203224132521
AT3G12380_at 4.74327818372706 4.68695159908557 4.79331647390922 4.55231334860909 4.11853196850774 4.6459339546685 4.37734086499216 4.47310803513433 4.21829280223068 4.55397367450243 4.38675671584117 3.70550243137239 3.77546979508317 3.09203248620373 3.54380992963581 3.93951595998054 4.36569861464049 3.81840728151482 4.80362094382992 0.217168611915152 0.215610977714168 0.210653697866703 0.208687997045703 0.205806837063758 0.209778119448265 0.205874975265753 0.214328857935833 0.214097572781657 0.207835248218707 0.209936708685451 0.209174572103680 0.208143878831486 0.20811467299834 0.211284767395134 0.205806837063758 0.205806837063758 0.208331262704229 0.211880082516846 3 3 - 3938415 3938831 3938623.455 3938169 3941907 - gene protein_coding_gene FALSE TRUE AT3G12380.1 ATARP5 (ACTIN-RELATED PROTEIN 5) Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family. similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin -like [Oryza sativa (japonica cultivar-group)] (GB:BAD61490.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.369771194690735 -3.62526903416886 0.00405896886873581 1 3.59664177083855 8.72569428289839 -0.369771194690735 0.102172534058120
AT4G29140_at 1.48065050098041 1.8400074141085 1.34551191220628 1.48760142362688 1.74114595910063 2.42254675864825 1.54124441650903 1.72220115798581 1.42480437046721 1.26938282931906 2.54482406882873 2.20275927540979 1.89602404334009 2.32579120870262 2.38852014743432 2.14440870201309 2.09259092277822 2.09536730324725 1.70501209057109 0.196431959878258 0.194368407444299 0.196411088635312 0.194368407444299 0.199925063938853 0.203067898991743 0.204031794075786 0.201835564579700 0.204505877710185 0.200118393671998 0.202310368914856 0.19642733094075 0.200046984395841 0.203472216602292 0.200077109624055 0.199757663380090 0.203796349476594 0.202145557921903 0.211838869759906 4 4 + 14370159 14370720 14370448.545 14368925 14370898 + gene protein_coding_gene FALSE TRUE AT4G29140.1 MATE efflux protein-related similar to MATE efflux protein-related [Arabidopsis thaliana] (TAIR:AT5G19700.1); similar to putative NIC2 [Oryza sativa (japonica cultivar-group)] (GB:BAD54145.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.424030793258193 3.62510017232828 0.00406016071661078 1 3.59638353622383 3.53645642910658 0.424030793258193 0.139131990503241
AT4G14020_at 9.89021886820997 9.94145362122011 9.87778223750692 10.0574525768063 10.0870282877281 9.69943430843466 9.65099018728466 9.80690486612513 8.7058934323966 8.91101238846963 7.60343440569927 7.50185616868128 7.88000999898532 7.80687059076477 7.25595527290637 8.4621417600677 8.6552517443077 7.18658851424621 8.1376133799573 0.154209178296725 0.154209178296725 0.154209178296725 0.155336759998782 0.162428208439451 0.159473244748052 0.161873085776784 0.158560452459791 0.166001015998354 0.154209178296725 0.156586257094233 0.164566698393213 0.15816660475511 0.164715266708087 0.16980645149802 0.158438622534624 0.162386513438624 0.160137234631667 0.156099462478806 4 4 - 8095372 8095676 8095503.727 8095210 8095731 - gene protein_coding_gene FALSE TRUE AT4G14020.1 rapid alkalinization factor (RALF) family protein contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.341396854870746 -3.6245258479401 0.00406421707133986 1 3.59550521870532 18.0658347644471 -0.341396854870746 0.0791987293394188
AT1G54820_at 9.5764866314068 9.50472168430356 8.3431957391927 7.97125593851435 9.63505124574674 9.04649580330177 9.84094779168138 9.58359551059932 9.98633729964338 9.81215974502115 10.2355757839272 10.3609697581703 9.99781461822568 10.0540478529630 10.1804301689014 9.8421267714802 9.08958324544635 9.9440737801759 9.90764648964737 0.116770960213702 0.115047756604444 0.137347012809913 0.142681474333518 0.114706001766235 0.121024261402514 0.11915087178465 0.117594182168304 0.123988933672066 0.114706001766235 0.114706001766235 0.114706001766235 0.119431113557675 0.119762037960714 0.115448161287645 0.114706001766235 0.124631999173017 0.121693467805949 0.114706001766235 1 1 + 20453224 20454372 20453762.182 20451032 20454528 + gene protein_coding_gene FALSE TRUE AT1G54820.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G58690.1); similar to Protein tyrosine kinase, putative [Medicago truncatula] (GB:ABE77986.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.408204160084127 -3.62387344015836 0.00406882998593080 1 3.59450744479878 19.1202815891843 -0.408204160084127 0.129052506435807
AT1G73950_at 6.18396233364044 6.20068133736751 6.8379156091892 6.69552948903763 7.31718275575752 7.23466832849606 7.28442453111304 6.56541939748216 5.55370996565667 5.78821458873011 5.61401431104944 5.68757149286103 6.26955019538216 5.75122673003577 5.27107195756339 6.00209641187479 7.0402451028451 6.12835203835531 5.52111099300844 0.227518059206094 0.218868160890932 0.226734613851312 0.225364656141605 0.236163684192618 0.231596634355769 0.226512574812308 0.222540447593734 0.244063137448707 0.222717680487372 0.222588345026203 0.218800637439362 0.217884211166122 0.230640544609334 0.220901301202394 0.224724026816385 0.217166363065659 0.227801650611062 0.218759931052201 1 0|1 /|- 27804507 27805482 27804991.875 27803491 27808265 - gene protein_coding_gene FALSE TRUE AT1G73950.1 zinc finger (C3HC4-type RING finger) family protein similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G68820.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18470.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90658.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.406103163291721 3.62379916022556 0.00406935553187071 1 3.59439384028229 12.5857369123242 0.406103163291721 0.127677561916441
AT4G00300_at 8.04727800147437 8.34417072393579 7.62633089499476 7.8437473927045 7.76054546708297 7.72074368312736 6.98871961542772 6.94191679612016 8.42704361777627 7.00247201224983 8.76839318239374 8.59219822129555 7.47521802114696 7.634216372385 9.03286481470432 7.64941118072905 7.01869971377106 8.0736744618201 7.1778673572663 0.184540431185042 0.178200588454722 0.174199105659616 0.176696080828075 0.176959921963419 0.189062245262446 0.178206139004581 0.184710072727207 0.18680764766386 0.185753245740281 0.177131055987943 0.173160817308990 0.182029289964335 0.185184030960929 0.181901269325002 0.175022673945325 0.187830352119068 0.176706725782990 0.183337591731881 4 4 + 129584 130061 129739.364 126509 130331 + gene protein_coding_gene FALSE TRUE AT4G00300.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT1G01570.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) 0.326055371085576 3.62318327271767 0.00407371576099163 1 3.59345187257553 15.4423709844225 0.326055371085576 0.0645635173024746
AT4G11260_at 9.73719490685352 9.96493541865752 9.9263156506905 10.0160330377486 9.99677633798638 9.6334453819564 9.42652286654814 9.31013614482255 9.25027976559113 8.68746120276123 9.30544263476497 9.21557628441811 9.38625183114496 9.30051636809484 9.30697278797028 9.11847717608044 9.14841826641508 9.17539671985951 8.60392802521849 0.131912510033852 0.128211145483471 0.130501927321963 0.128569569037673 0.128593969260544 0.131568876252804 0.133561877317552 0.134666022733837 0.134693913133831 0.132745073589441 0.132548531513122 0.127049513146906 0.127624879734094 0.133184553529902 0.136150443726745 0.131170204317766 0.145310608729863 0.127727548637861 0.136747655541001 4 0|4 /|- 6851582 6852564 6852137.375 6851273 6853856 - gene protein_coding_gene FALSE TRUE AT4G11260.1 SGT1B (enhanced downy mildew 1b); binding Functions in plant disease resistance signaling, SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. similar to SGT1A (Suppressor of G2 (Two) 1A), binding [Arabidopsis thaliana] (TAIR:AT4G23570.2); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06580.1); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06581.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain SGS; (InterPro:IPR007699); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.340426889305814 3.62317413089632 0.00407378051758221 1 3.59343789033153 18.7973472213832 0.340426889305814 0.078443639084144
AT1G32790_at 10.2936440833992 10.5265906520633 10.5406171846155 10.7839648993131 10.8166532834025 10.5457852242373 10.0897201332001 10.1787462056112 9.81802367903628 9.94378958278952 10.4197150967809 10.1039056342101 10.0823576371396 10.3482703528573 9.930366363705 10.4993129881618 9.79310463920088 10.1341536473430 9.90023350124742 0.0827147845880832 0.0815979947184966 0.08462718680253 0.0815979947184966 0.0820049828388198 0.0881368197926557 0.083538921942302 0.0853232746687858 0.0944041945315724 0.0867938355796101 0.0831397003426479 0.0815979947184966 0.0831476783797451 0.0841712896444907 0.0871251166343572 0.0829152059462134 0.0900283644886983 0.0817252449003414 0.082498532760667 1 1|0 -|/ 11875157 11876340 11875605 11874684 11877367 - gene protein_coding_gene FALSE TRUE AT1G32790.1|AT1G32790.2 CID11; RNA binding / protein binding|CID11; RNA binding RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. similar to RBP37 (RNA-BINDING PROTEIN 37), RNA binding [Arabidopsis thaliana] (TAIR:AT4G10610.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RBP37 (RNA-BINDING PROTEIN 37), RNA binding [Arabidopsis thaliana] (TAIR:AT4G10610.2); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.33806462661204 3.62226407502071 0.00408023226326762 1 3.59204593208427 20.4975888162049 0.33806462661204 0.0763752327665747
AT4G17486_at 7.81854062146888 8.3190288094222 7.78501029202465 7.69294279800349 8.40481269709685 8.11483265111933 6.7359559211007 7.27467693400224 7.07752306102841 7.04662551635045 7.69600489592684 7.83969016527355 7.55733695650352 7.90532468217275 6.97497689866876 7.7402092005877 7.27752997130675 7.1597140127269 7.29171962652769 0.229109651538811 0.230984951632129 0.235818949310159 0.244984633221849 0.234198474121153 0.245869228013925 0.231091141917294 0.236170309588482 0.243993203699432 0.233481352039991 0.234131979862912 0.236150299362833 0.232346397911994 0.239946019592078 0.249797361460405 0.229934439711639 0.246926998225305 0.251671956481845 0.229109651538811 4 4|0 -|/ 9750004 9750542 9750264.556 9749740 9751721 - gene protein_coding_gene FALSE TRUE AT4G17486.1 Identical to UPF0326 protein At4g17486 [Arabidopsis Thaliana] (GB:Q93VG8;GB:O23591;GB:Q9FPJ0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47310.1); similar to hypothetical protein 40.t00020 [Brassica oleracea] (GB:ABD65143.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) 0.421287325661453 3.62078744429857 0.00409072310738943 1 3.58978719137635 15.0969606317955 0.421287325661453 0.137714288278113
AT1G31410_at 6.54786866904358 6.26831063790088 5.4016452859468 5.42167459237363 6.56671686835759 6.18193961132273 6.80299016267716 6.82464351664444 7.61895715367523 7.0226637918349 7.7630753986603 7.39424836728396 7.20587744407797 7.68802348543326 7.38333854765306 7.21337588676603 6.43338304757136 7.199466256919 7.12822241451771 0.171246968908037 0.181696611976852 0.181381678483901 0.175979951035412 0.184621056145148 0.181966236561429 0.176101267985000 0.176152667087559 0.191861099666670 0.179674233144760 0.170942847419218 0.170678592993543 0.171870650789978 0.179611284066418 0.176298514640170 0.176744338901495 0.177251327548728 0.181685034008147 0.175318472434614 1 1 - 11247088 11247722 11247379.182 11246895 11249340 - gene protein_coding_gene FALSE TRUE AT1G31410.1 putrescine-binding periplasmic protein-related similar to B0403H10-OSIGBa0105A11.16 [Oryza sativa (indica cultivar-group)] (GB:CAH67864.1); contains InterPro domain Bacterial periplasmic spermidine/putrescine-binding protein; (InterPro:IPR001188) -0.344737528056662 -3.62060019773398 0.0040920554015506 1 3.58950075139341 13.5228301718525 -0.344737528056662 0.0824649091779383
AT3G54170_at 5.57887074164968 5.60376437556513 4.61673702401211 4.81754254627654 5.47551327532892 5.21289344062603 5.43609034296307 5.43409450039655 5.20797865241811 4.97450062462415 4.9669657699118 5.09882487377596 5.10194945842224 4.83755852225039 4.80021222540705 4.95552295879325 4.47532346461784 4.93316860746098 4.97412120161186 0.229955484149047 0.228572200295078 0.241091421039208 0.229921628815044 0.231199696176947 0.243881335715992 0.226837744143313 0.228737685730812 0.246907145256273 0.234211340541714 0.226837744143313 0.234984849961971 0.232578899738103 0.233166247384702 0.229743105181037 0.231745891313396 0.230430323401621 0.239914824855601 0.229726564574739 3 0|3 /|+ 20068848 20070284 20069546.778 20067683 20070500 + gene protein_coding_gene FALSE TRUE AT3G54170.1 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A. Identical to FKBP12-interacting protein of 37 kDa (FIP-37) (Immunophilin- interacting protein AtFIP37) (FIP37) [Arabidopsis Thaliana] (GB:Q9ZSZ8); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65010.1); similar to FKBP12-like protein [Mirabilis jalapa] (GB:AAT07458.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.319271421527071 -3.62057172185715 0.00409225805190429 1 3.58945719016032 10.2461337281679 -0.319271421527071 0.0573737446555153
AT2G19040_at 3.29270922272086 3.08034750484289 2.59352181412362 2.42311539959542 2.41809416673625 2.49853131621725 2.75122450723786 2.98606307503962 2.97015404400715 2.8117187787372 2.73363713911647 2.97820443924424 1.93056780244341 2.41449752419782 3.06657228830897 2.75171231696977 3.31352016195081 2.00427707533680 2.48294970776280 0.417048078798695 0.417048078798695 0.417048078798695 0.417048078798695 0.417048078798695 0.417048078798695 0.417048078798695 0.434841478424184 0.417048078798695 0.417048078798695 0.424728755862439 0.417048078798695 0.429163927822337 0.425485713957016 0.420827430927945 0.417048078798695 0.417048078798695 0.431188971940355 0.417048078798695 2 2 + 8257007 8257036 8257021.333 8257005 8257223 + gene protein_coding_gene FALSE TRUE AT2G19040.1 RALFL12 (RALF-LIKE 12) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL11 (RALF-LIKE 11) [Arabidopsis thaliana] (TAIR:AT2G19030.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.325043826674259 -3.62040502921945 0.00409344453805673 1 3.58920218883161 5.45748309428843 -0.325043826674259 0.0637619276561587
AT1G20880_at 5.7222672270999 5.15839626059943 5.90948253225148 5.72135130817367 5.58092618077831 6.54866980928418 4.70267774544875 4.96966733465021 4.35111599762104 4.20719503331231 3.75764407264205 4.02653447351174 4.78428416976749 4.1579305758835 4.04375219886144 5.07574261347463 5.40614619925459 4.56421031025598 4.09033121972975 0.273850138033149 0.274707794295183 0.266557164721788 0.2694615215318 0.276900112856713 0.279011505243336 0.267300141245596 0.278480813669279 0.267288421976368 0.270844983834051 0.269997109821208 0.267409781653969 0.276221460444215 0.267681084733349 0.266158621983023 0.271732358456025 0.274201866466560 0.268015185940791 0.273783519381779 1 1|0 -|/ 7262897 7264223 7263493.111 7262032 7265427 - gene protein_coding_gene FALSE TRUE AT1G20880.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G76460.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.531335904412201 3.6193722816497 0.00410080334706488 1 3.58762225673069 9.88580212991613 0.531335904412201 0.201900362501833
AT1G26770_at 3.39271782738130 3.91571461558536 2.50447103507155 2.62588978629823 4.64759892200453 4.01232340499517 5.22821146158484 5.51928451937277 3.59085499429457 4.0091188577601 6.21543720683067 6.76507872967988 4.84977294715328 5.30240020390961 7.29736497903966 5.75063324659357 4.03771627884175 4.72052764682523 3.38315657622092 0.260848625702792 0.260848625702792 0.269135726374745 0.260848625702792 0.260848625702792 0.266443681135435 0.264181858567426 0.270734546899931 0.270837604218020 0.267533039113535 0.26260060677951 0.267221459772916 0.260848625702792 0.268770763771560 0.268734421942538 0.260848625702792 0.266766936902059 0.262237693127355 0.264189584103049 1 1 + 9260058 9260752 9260374.182 9259592 9261300 + gene protein_coding_gene FALSE TRUE AT1G26770.1|AT1G26770.2 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A10 precursor (AtEXPA10) (Alpha-expansin-10) (At-EXP10) (AtEx10) (Ath-ExpAlpha-1.1) (EXPA10) [Arabidopsis Thaliana] (GB:Q9LDR9); similar to ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) [Arabidopsis thaliana] (TAIR:AT1G69530.2); similar to expansin [Pyrus communis] (GB:BAC67191.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.444955804939325 3.61915238276511 0.00410237198991430 1 3.58728583326334 8.61998138701225 0.444955804939325 0.152500995579754
AT4G05420_at 7.83195218212773 8.09816575147027 7.77358521656749 7.91225897399144 8.10924732691865 8.2720874022548 7.44521869842429 8.02328783285452 6.124945033386 7.4772357489511 7.9823571857344 7.8059918164595 7.55411230031384 7.86927715060214 7.07797639920737 8.05125122040328 7.77101801070598 7.18674781057949 7.55492091246964 0.176182597466731 0.174254809126209 0.187867949805647 0.182545540688017 0.178148498760825 0.188098437920216 0.179884462084733 0.177762617478398 0.202210098689554 0.186707058957872 0.177526403170473 0.181367519798987 0.190500432465105 0.179333832280713 0.177453090009912 0.173974295506404 0.184137262192701 0.184444350315881 0.183511868336266 4 4 + 2752088 2752546 2752277.818 2746118 2752940 + gene protein_coding_gene FALSE TRUE AT4G05420.1 DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. Identical to DNA damage-binding protein 1a (UV-damaged DNA-binding protein 1a) (DDB1a) (DDB1A) [Arabidopsis Thaliana] (GB:Q9M0V3;GB:Q8VY31); similar to DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) [Arabidopsis thaliana] (TAIR:AT4G21100.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (GB:Q6E7D1); similar to UV-damaged DNA binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAB20761.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (High pigmentation protein 1) (GB:Q6QNU4); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871) 0.388556434431199 3.61877935136525 0.0041050344145438 1 3.58671512042651 15.2905797822526 0.388556434431199 0.116189278864930
AT3G09250_at 7.74361616491856 8.00370902876018 8.02947750752967 8.13983127584521 8.36010108246746 7.88572739740403 8.26151445744383 7.8578111782052 6.19376076981125 7.39732311837311 7.17822766500093 7.54480229209653 7.06926231847102 7.4662295782714 7.86164129887316 7.52793746132844 7.67159449601193 7.26318421761013 6.81382371677363 0.202740174542586 0.196325550753614 0.213533603100533 0.211026211545065 0.205019753091804 0.203332816039641 0.200296382289038 0.205603648361333 0.216432289851419 0.218920389657798 0.207803458522142 0.197708654609429 0.203735245861113 0.209103707740885 0.206630640732243 0.200144900162769 0.219201460285980 0.205214148316374 0.196325550753614 3 3 + 2839587 2840276 2839982.818 2839007 2840589 + gene protein_coding_gene FALSE TRUE AT3G09250.1 DNA binding / nuclease similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10925.2); similar to Os02g0788500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048348.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19863.1); contains InterPro domain UvrB/UvrC protein; (InterPro:IPR001943) 0.391672828059128 3.61846199617456 0.00410730086570738 1 3.58622957672261 15.1599714037104 0.391672828059128 0.118366478284009
AT2G05170_at 6.99275186192632 7.01514492999555 6.70450966056383 6.37939295369791 6.8532888535079 6.73083237602885 6.9749720247482 6.81759649635618 5.4080974081293 6.38303155873425 7.2052131497027 7.23191132815077 6.38529363990754 6.94497109335469 6.93188396302963 6.72787908250556 6.70840575938022 6.34367874160488 5.82668417542775 0.212114799827504 0.210079149163587 0.217607009828948 0.213144431508343 0.217230204102565 0.226262331531168 0.215400498657771 0.229877527169056 0.257907925686897 0.216084219061641 0.210991579453011 0.210079149163587 0.219118961091840 0.234848747425458 0.227344263525761 0.218258732371814 0.226074317615935 0.217011840810402 0.212890791537720 2 2 + 1872529 1873201 1872919.091 1869874 1873809 + gene protein_coding_gene FALSE TRUE AT2G05170.1 ATVPS11 (Arabidopsis thaliana vacuolar protein sorting 11); transporter Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. similar to Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 [Medicago truncatula] (GB:ABE88907.1); similar to vacuolar protein sorting 11 [Danio rerio] (GB:NP_001032797.1); similar to PREDICTED: similar to vacuolar protein sorting 11 [Gallus gallus] (GB:XP_417847.2); contains InterPro domain 7-Fold repeat in clathrin and VPS proteins; (InterPro:IPR000547); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.327094923316898 3.61811158054939 0.00410980492293208 1 3.58569343907183 13.1498156323372 0.327094923316898 0.0661161607303399
AT1G73870_at 8.61212491509399 8.44835561480021 9.39378140623171 9.32575468393779 9.37550116803379 9.50754574730373 10.0250174055147 10.0517900898702 10.3859998369252 10.7601620046710 9.8967818206587 9.79189727860925 10.0252007977041 9.94509202269587 9.50227039590278 10.1804200632677 10.0729937120813 10.0449596542398 10.8293643891605 0.142140881891384 0.141998235611154 0.127812494207143 0.131129291429643 0.129311544831338 0.126644215174939 0.125042783267313 0.128720587885056 0.122374327154101 0.12760025782063 0.127514799946403 0.127666606679510 0.124265239428416 0.130549548200705 0.13062531792997 0.127612906168366 0.127560891807909 0.124451327538328 0.133224997635107 1 1|0 +|/ 27783499 27784121 27783941.2 27782827 27784337 + gene protein_coding_gene FALSE TRUE AT1G73870.1 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 7 (COL7) [Arabidopsis Thaliana] (GB:Q9C9A9;GB:Q5XF76); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G25440.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD54363.1); similar to Os03g0711100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051053.1); similar to Os06g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057333.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.304866515191822 -3.61500712344033 0.00413205811678684 1 3.58094303221389 19.6379642347135 -0.304866515191822 0.038541323581125
AT2G30650_at 0.584144677647397 0.558839087735684 1.23010141403081 1.25344768831649 0.914991716259459 0.821883121505867 1.02880306900812 0.560669533297724 1.11891286019053 1.02403007538247 1.47955758894554 0.866491898884627 1.40216645836082 1.05540907110311 1.12008069923986 1.13020977096278 1.36332590670133 1.44292044985383 0.603474001275015 0.214530862331884 0.219664195880523 0.21777774398046 0.227678379924896 0.220713471439164 0.222757470537286 0.214197605890894 0.217086054010321 0.217778395082176 0.220730493933169 0.218167434143664 0.21852115067106 0.214691103844107 0.219878086319016 0.219117359925743 0.221212107418919 0.218862821232950 0.217133597686401 0.220044686054921 2 2|0 -|/ 13060864 13062284 13061478.111 13060854 13063457 - gene protein_coding_gene FALSE TRUE AT2G30650.1 catalytic similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative [Arabidopsis thaliana] (TAIR:AT2G30660.1); similar to enoyl-CoA-hydratase [Avicennia marina] (GB:AAF01467.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.344519905664870 3.61408777859561 0.00413867192458857 1 3.57953606363859 1.94310630986977 0.344519905664870 0.0828141406974479
AT4G17410_at 2.23519401257333 1.91938241263714 1.57328310915309 2.05536517381742 2.19983454382734 2.05934415131289 2.53757802792429 2.88356475476563 2.38845486445036 2.17217815509412 2.16073526172251 1.60884779701382 1.71363200532268 1.85585822604513 1.69954166236737 1.92131950381827 1.95902825460222 1.60030786157641 1.96874258842492 0.183994606759938 0.178706924227005 0.186181522367116 0.18024472867812 0.179325763972681 0.177360919400616 0.175866123952890 0.187220851793846 0.179007178503608 0.178272583241609 0.1779003369604 0.179616332787899 0.178480522525739 0.177468724668739 0.178698933453552 0.179539482543117 0.185626138648096 0.189836360713491 0.181205398956357 4 4 + 9720024 9721604 9721222.364 9715786 9721940 + gene protein_coding_gene FALSE TRUE AT4G17410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47430.1); similar to hypothetical protein 31.t00039 [Brassica oleracea] (GB:ABD65123.1); similar to Zinc finger, RING-type; Zinc finger, CCHC-type [Medicago truncatula] (GB:ABE84222.1); similar to hypothetical protein 24.t00020 [Brassica oleracea] (GB:ABD64942.1); contains domain RING/U-box (SSF57850); contains domain Retrovirus zinc finger-like domains (SSF57756); contains domain RETINOBLASTOMA-BINDING PROTEIN 6 (PTHR15439); contains domain no description (G3D.3.30.40.10) -0.39176138593933 -3.61291803135679 0.00414710291808471 1 3.57774574847264 4.17862695202557 -0.39176138593933 0.118840110181158
AT2G17240_at 7.26768810744951 7.19066907159541 6.7248470829971 6.80230248453906 7.2769342579413 6.3314148719722 7.64545471284352 7.82069317299041 7.76484931602743 7.74780654697203 7.29233032450158 7.60911629714748 7.46418990633898 7.1389341321747 8.0099649623741 7.38493885293565 7.3096159120849 7.58160107547267 7.63316910345111 0.187974935836941 0.186803737496416 0.191732825835046 0.181669346663837 0.185741948446586 0.191380382284836 0.188671812685480 0.183399991359037 0.186929209213348 0.185168147095262 0.182457892366193 0.183941086847027 0.181669346663837 0.188272952273125 0.182517308665875 0.181669346663837 0.18827133359405 0.192866505567055 0.182634913911099 2 2|0 +|/ 7505290 7506054 7505670.4 7505212 7506288 + gene protein_coding_gene FALSE TRUE AT2G17240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24506.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77731.1) -0.469345073897698 -3.61272530617825 0.00414849368936012 1 3.57745076583775 14.7270561811389 -0.469345073897698 0.167483185024339
AT3G61070_at 9.06484250691892 9.27660784811433 9.54088844845532 9.39947325569478 9.64110974213056 9.48763374592597 9.18467327018884 9.0337981385325 7.82010849882833 8.43633246187595 8.28343509511477 7.88497788210447 8.74441026830921 8.20265864266079 7.9543450813663 8.33272807859418 8.48546782103174 8.4246087822911 7.82996208867253 0.170161902124101 0.177563062826041 0.178836834308586 0.176264263614003 0.180273607586171 0.183971078321653 0.174100701118811 0.177697309137409 0.190077185076472 0.179884720811607 0.174835992386253 0.171612525979707 0.178906737008941 0.176566349404485 0.175900666418461 0.175762094362156 0.181086460051652 0.192762681159225 0.184317750477779 3 3|0 -|/ 22616006 22616983 22616466.444 22615577 22617753 - gene protein_coding_gene FALSE TRUE AT3G61070.1|AT3G61070.2 peroxisomal biogenesis factor 11 family protein / PEX11 family protein|PEX11E member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to PEX11D [Arabidopsis thaliana] (TAIR:AT2G45740.3); similar to unknown [Lycopersicon esculentum] (GB:AAF75750.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.318786898544069 3.61189465547668 0.00415449345498488 1 3.57617933763913 17.4875683559417 0.318786898544069 0.0576978375813804
AT3G01100_at 4.98114617438985 4.9602070665658 5.79612226138657 5.78666723052684 6.40134345696511 5.64221481498341 5.7484051603356 5.3775081595628 4.71573144180837 4.41057980421034 4.59100493374495 4.48391561517009 5.02929116624067 4.69025738833102 4.23468069550487 4.74011186814061 5.00750027925851 4.81606853532996 4.28740180017751 0.174696726002019 0.174029910356220 0.180893206974645 0.173453562887292 0.173006053009957 0.173432440018145 0.176543505001527 0.173082435571025 0.178865702070659 0.178041547651464 0.171589008251175 0.175453702045892 0.175606475368124 0.173276566360915 0.18444204453553 0.173614577871152 0.183968366353680 0.172344208373316 0.174382587583369 3 3|0 -|/ 35049 38193 36576.4 34730 38536 - gene protein_coding_gene FALSE TRUE AT3G01100.1|AT3G01100.2 HYP1 (HYPOTHETICAL PROTEIN 1) unknown protein, has cDNAs and ESTs associated to it similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.433818214450824 3.61130826859203 0.00415873429561835 1 3.57528174563616 10.1718725367297 0.433818214450824 0.146266383761777
AT4G28450_at 5.08769551479336 5.05051593500677 4.93102789600919 4.7790062909791 4.11997296014934 4.44670994189533 4.4940607565272 5.12753364805687 3.42309713946497 3.51103882943833 2.82118383588453 3.29199551781303 3.17938011682254 2.93760347265321 3.28123599928838 3.38075601648885 3.89745549455115 3.34950981174136 4.17119846108803 0.209048097596675 0.208020763988339 0.210753743210426 0.218894156274945 0.204557874955937 0.203794669524463 0.205253946768185 0.212635780012278 0.20552118727945 0.210270735486268 0.219526993195972 0.204873931272210 0.21393194007023 0.206359401310446 0.205304104464307 0.203765260628474 0.209093387620123 0.2057362586856 0.213789936118807 4 0|4 /|- 14061764 14062718 14062308 14061465 14064715 - gene protein_coding_gene FALSE TRUE AT4G28450.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to WD40 repeat-containing protein (ISS) [Ostreococcus tauri] (GB:CAL57292.1); similar to Os01g0238900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042541.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Sof1-like protein; (InterPro:IPR007287) -0.402580150756435 -3.61107526473948 0.00416042065413815 1 3.57492507270519 8.23914945617006 -0.402580150756435 0.126286971325102
AT3G06730_at 6.06420665941908 6.31771769862285 5.54776901225213 5.82860992032187 6.82601984397244 5.68035123061576 7.20579153386284 7.21990917217588 5.61373202368211 6.28213790036782 5.00544043834224 5.65977115900279 5.7579553300982 5.50258766905092 6.02714780269154 6.4182542455268 5.98142617396201 5.43999098045843 6.33912973331582 0.237420312789952 0.231776461637467 0.238932221540348 0.227587379383950 0.232354541615612 0.23503152924951 0.232157791498030 0.231006340543118 0.245420918660087 0.234864291186043 0.232276425632164 0.231579684263879 0.230882479229524 0.233434475151900 0.239622779261232 0.227587379383950 0.242273321061291 0.232420553821797 0.232364479364812 3 3|0 +|/ 2124292 2125801 2125043.444 2124223 2126148 + gene protein_coding_gene FALSE TRUE AT3G06730.1 thioredoxin family protein similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to thioredoxin protein [Nicotiana benthamiana] (GB:AAS80320.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.542740129229957 -3.61071491905605 0.00416303003352499 1 3.57437345869027 12.2374993559121 -0.542740129229957 0.208808602258572
AT2G01320_at 8.13750573466348 8.1189612206082 7.93565569613682 7.86384298483393 8.1725641721864 8.07316454136467 8.24093068649766 8.15054709523397 7.65827582587605 7.90193648806976 7.1524477555296 7.29210887402784 7.12218530183845 7.37650960942934 7.41550854114505 7.5974567781053 7.58709165937906 7.16263900466599 7.79207232045387 0.171886245988649 0.161054480527560 0.170800090435024 0.161054480527560 0.168688895262288 0.167759961116313 0.171195908872018 0.163974167476589 0.183898894694623 0.167921412695594 0.170662266982352 0.174355400242145 0.164572129084926 0.172451894081582 0.169575937457898 0.161514898157161 0.166555073288138 0.182650414377028 0.161409599599692 2 2|0 -|/ 154683 155400 155141 154130 158181 - gene protein_coding_gene FALSE TRUE AT2G01320.1|AT2G01320.2|AT2G01320.3|AT2G01320.4 ABC transporter family protein Identical to White-brown complex homolog protein 7 (WBC7) [Arabidopsis Thaliana] (GB:Q9ZU35;GB:Q3EC89;GB:Q9ASR9); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Transporter, ABC superfamily (Breast cancer resistance protein) (ISS) [Ostreococcus tauri] (GB:CAL51470.1); similar to Os01g0121700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041878.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.298265386619258 -3.61027200007254 0.00416623966410264 1 3.57369542334787 15.6478156757648 -0.298265386619258 0.0265572354518035
AT1G48050_at 5.46848018888109 5.47404052081994 4.79503111564179 4.904409387134 4.84377147764891 4.37119822852582 5.64417322759768 5.20131027482254 4.84630634652332 4.49360939736009 4.54486839887683 5.37338595231803 4.31606753317393 5.02120641015737 4.77930657066479 4.75905370408157 4.82277808430441 4.31087338919948 5.03171383509859 0.237868388897645 0.234542111366843 0.235422903423620 0.233537456327848 0.237361831234387 0.244533907694296 0.234382986150377 0.243387878948563 0.255069399050717 0.246701672211516 0.236464015735453 0.234228930283605 0.237817079456875 0.24086084125819 0.234274387845958 0.233537456327848 0.250409996300578 0.238629627677445 0.240619136640513 1 1|0 +|/ 17729712 17730475 17730074.8 17727121 17730712 + gene protein_coding_gene FALSE TRUE AT1G48050.1 ATKU80/KU80 (Arabidopsis thaliana Ku80 homolog); double-stranded DNA binding / protein binding Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation. similar to Ku70/Ku80, N-terminal alpha/beta; Ku80 antigen [Medicago truncatula] (GB:ABE92389.1); similar to KAP-2 [Medicago truncatula] (GB:AAL87543.1); similar to KAP-2 [Phaseolus vulgaris] (GB:AAL87544.1); contains InterPro domain Ku; (InterPro:IPR006164); contains InterPro domain Ku80 antigen; (InterPro:IPR011210); contains InterPro domain Ku70/Ku80, N-terminal alpha/beta; (InterPro:IPR005161); contains InterPro domain Ku70/Ku80 C-terminal arm; (InterPro:IPR005160) -0.383999594219813 -3.60981683468491 0.00416954069633142 1 3.57299861915612 9.8535446518045 -0.383999594219813 0.113670385764857
AT1G29970_at 9.05680577249108 9.27401241638004 9.35548466327407 9.51282205881586 9.6769118537694 9.6600068190493 8.37357730395204 8.91880168209285 9.10503608318584 8.44729816911412 8.73105405478293 8.62206918320996 9.09751429298066 8.94283440151272 8.45466716424595 9.02253587345488 8.86974435910713 8.94469313195592 8.65936864680333 0.132709730429454 0.132031849116588 0.135706487907160 0.128784300959838 0.134294311422310 0.134922162938321 0.130513725660028 0.127819306050824 0.140732137934729 0.128670666440921 0.132358333147452 0.133271007048984 0.124354810526833 0.128198588786674 0.143290756568693 0.131861040120927 0.147669449020382 0.128360826136629 0.132825859244691 1 1|0 -|/ 10500110 10501246 10500721.222 10498335 10501436 - gene protein_coding_gene FALSE TRUE AT1G29970.1|AT1G29970.2 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)|RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome Identical to 60S ribosomal protein L18a-1 (RPL18AA) [Arabidopsis Thaliana] (GB:Q8L9S1;GB:Q9C8S2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to Os06g0359400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057602.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2)|similar to 60S ribosomal protein L18A (RPL18aA) [Arabidopsis thaliana] (TAIR:AT1G29965.1); similar to Ribosomal L18ae protein [Medicago truncatula] (GB:ABE90867.1); contains InterPro domain Ribosomal L18ae protein; (InterPro:IPR002670) 0.371955906476662 3.60700095632482 0.00419002253304485 1 3.56868735660061 18.0149894999068 0.371955906476662 0.105192353898554
AT1G20020_at 12.5258582443515 12.7170754541749 12.6112942832328 12.5285435520035 12.8388544161244 12.5893698776692 12.5334159168111 12.5726284439818 12.3611462655759 12.4509149378913 13.0913405084785 13.0420782966753 12.9851398615082 13.0944753864469 12.8529365060097 12.8458109856798 12.5410205809530 12.8574428536950 12.1891953836421 0.082820229806541 0.0803525748348922 0.083546823175932 0.0826146104741485 0.0824122364703795 0.0846891769665066 0.084364059532716 0.0821802256443093 0.0914583168211609 0.0803525748348922 0.0803525748348922 0.0807989038257789 0.0818435857240442 0.0863816776339923 0.0836544522579323 0.0805600513459883 0.0893722180609116 0.0844006906011261 0.0803525748348922 1 0|1 /|+ 6943969 6944580 6944263 6942708 6945007 + gene protein_coding_gene FALSE TRUE AT1G20020.1|AT1G20020.2|AT1G20020.3 ATLFNR2 (LEAF FNR 2); NADPH dehydrogenase/ oxidoreductase|ATLFNR2 (LEAF FNR 2) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma similar to ATLFNR1 (LEAF FNR 1), NADPH dehydrogenase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G66190.1); similar to chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] (GB:CAB71293.1); contains InterPro domain Ferredoxin--NADP reductase; (InterPro:IPR012146); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709)|similar to ATLFNR1 (LEAF FNR 1), NADPH dehydrogenase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G66190.1); similar to chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] (GB:CAB71293.1); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.317399722077681 3.60630665699533 0.00419508857206018 1 3.56762421799441 25.2383964326106 0.317399722077681 0.0566583881920866
AT1G02330_at 6.8486456086986 7.53674374269125 6.78147612978922 6.95121202148343 7.24212770943711 6.39505591481538 6.94246941556272 6.94632826034608 6.88301363642699 6.9121060524128 6.50726481206448 6.42866109537423 6.22392480590454 6.41371146762803 5.95529734965756 6.08557697970695 5.98337252906704 6.18352851300982 7.2536650646724 0.197366078515991 0.194942261249614 0.204041290383322 0.201474069826239 0.199729052436370 0.205758858532525 0.196969996937721 0.198198489911281 0.209649719730900 0.195159225959200 0.194942261249614 0.194942261249614 0.201399298805176 0.199662883383846 0.201368279854116 0.197489388222031 0.213929792155967 0.20360123936581 0.197138304095511 1 1|0 -|/ 462208 463145 462639.3 462075 463612 - gene protein_coding_gene FALSE TRUE AT1G02330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF90174.1); similar to Os03g0374100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050211.1); contains InterPro domain Hepatocellular carcinoma-associated antigen 59; (InterPro:IPR010756) -0.50983660169793 -3.60550323589768 0.00420095871134632 1 3.56639392439316 13.5749717396308 -0.50983660169793 0.191132184264442
AT1G18040_at 2.69480070744781 2.73301725010111 2.46341036699651 2.84789903470451 2.63054077078755 2.97397282453004 2.77260444473361 2.48686221599402 2.01154721681298 2.35438750661566 2.83364185430626 2.99960711034305 2.89856867531317 2.75449724303191 2.83321771725281 2.74930016631806 2.88739060898406 2.73071996336668 2.10701462615023 0.196954189418273 0.199244584420928 0.210268000899346 0.200301244291427 0.210000323686512 0.196954189418273 0.208749041146763 0.200027697959462 0.203049685144707 0.204552516700892 0.205500213982067 0.196954189418273 0.197818449223533 0.201388880403688 0.203115841429621 0.200981956637842 0.204998108796384 0.201556735011870 0.196954189418273 1 1|0 -|/ 6207306 6208020 6207546.4 6206864 6209493 - gene protein_coding_gene FALSE TRUE AT1G18040.1 AT;CDCKD;3/CAK2AT/CDKD1;3 (CYCLIN-DEPENDENT KINASE D1;3); kinase/ protein kinase similar to AT,CDKD,1/CAK3AT/CDKD1,1 (CYCLIN-DEPENDENT KINASE D1,1), kinase [Arabidopsis thaliana] (TAIR:AT1G73690.1); similar to CDK-activating kinase [Medicago sativa subsp. x varia] (GB:AAK97227.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.367676364428527 3.60414605415607 0.00421089409983365 1 3.56431549246331 5.19714730219062 0.367676364428527 0.102217493309019
AT1G66820_at 8.2249280373601 8.67722324995505 7.64861926616252 7.59309691999246 8.55616097907644 7.91738306957868 9.30445574235891 9.1528349737894 8.50034115411377 8.53201104940371 8.19726431331813 8.83878499804812 8.53455253178148 8.64518626121503 8.65818792283286 8.46416580871642 8.54065178521833 7.91593080003586 8.17881114270352 0.157711551715569 0.163631441096112 0.176351291655463 0.174574234425129 0.165386105670229 0.17125626043127 0.165779866776112 0.167452541614171 0.176690979841523 0.159135582261395 0.162288038120282 0.162593584573304 0.164404094401695 0.166045554376751 0.161437286377994 0.159081016393997 0.162439323895308 0.167475330161894 0.170068878316397 1 1 + 24933759 24934041 24933914.455 24933703 24934214 + gene protein_coding_gene FALSE TRUE AT1G66820.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G10330.1); similar to Os11g0242700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067592.1); similar to hypothetical protein Bpse11_03001995 [Burkholderia pseudomallei 1106a] (GB:ZP_01489329.1); similar to hypothetical protein Bpse4_03000890 [Burkholderia pseudomallei 406e] (GB:ZP_01336410.1) -0.420213002462284 -3.60364136757103 0.00421459488408112 1 3.56354254970543 16.8233686138106 -0.420213002462284 0.138300861857114
AT3G29350_at 9.47418677703253 9.72707313785954 9.85850667425231 9.93432295064128 10.3573460344276 9.73531635683713 9.9379142988701 9.85653770788424 9.26929350673232 9.02508176548636 9.85488745606057 9.83694297805825 9.84456904242308 9.78257759834494 9.42306865878328 9.73905171215906 9.47135217389882 9.57553257234026 9.11122588301131 0.171073234992854 0.162481847462971 0.180687045790392 0.172737501843165 0.169034880666226 0.183529971415851 0.167595120783927 0.163771902974663 0.197423663242119 0.182615191424016 0.170484973843155 0.171592190786908 0.162481847462971 0.178046158471585 0.170863170349620 0.172048450011261 0.178669068897806 0.174443353074280 0.184158637538217 3 3|0 -|/ 11265627 11266616 11266147 11265384 11266769 - gene protein_coding_gene FALSE TRUE AT3G29350.1|AT3G29350.2 AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ signal transducer Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (APH2), AT5G39340 (APH3), AT3G16360 (APH4), AT1G03430 (APH5) and AT1G80100 (APH6). Identical to Histidine-containing phosphotransfer protein 2 (AHP2) [Arabidopsis Thaliana] (GB:Q9ZNV8;GB:Q3EAX3); similar to AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT5G39340.1); similar to putative histidine-containing phosphotransfer protein 3 [Populus x canadensis] (GB:CAH56501.1); contains InterPro domain Hpt; (InterPro:IPR008207)|Identical to Histidine-containing phosphotransfer protein 2 (AHP2) [Arabidopsis Thaliana] (GB:Q9ZNV8;GB:Q3EAX3); similar to AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT5G39340.1); similar to putative histidine-containing phosphotransfer protein 1 [Populus x canadensis] (GB:CAH56499.1); contains InterPro domain Hpt; (InterPro:IPR008207) 0.389121206279929 3.60266670022581 0.00422175145086078 1 3.56204974143921 19.2732495717682 0.389121206279929 0.117784351402399
AT1G15390_at 5.99979332830967 6.3938435320858 5.68511246081464 5.87116113258301 5.22907996353496 6.05815581581943 6.18524800642429 6.81866650791706 6.88000551264675 6.9525863218052 6.22296692301151 6.45471457350423 6.46104954226799 6.47790120090857 6.9644885051119 6.51871632361221 6.59145336952553 6.49087858402704 6.92542467232895 0.194080186050229 0.194110499508005 0.194883020405419 0.18720160091626 0.201669859596437 0.194005449513932 0.194813211431794 0.197516979042143 0.201341763803913 0.18720160091626 0.195164183481902 0.189360912154491 0.193379608701698 0.192659558625723 0.204212973380814 0.197571446355685 0.192313153646201 0.191346216595791 0.194642807656774 1 1|0 +|/ 5294890 5295587 5295282.7 5294624 5295792 + gene protein_coding_gene FALSE TRUE AT1G15390.1 PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase encodes a peptide deformylase-like protein. Removes N-formyl groups, a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis. Identical to Peptide deformylase, mitochondrial precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) (PDF1A) [Arabidopsis Thaliana] (GB:Q9FV53;GB:Q9XI30); similar to PDF1B (PEPTIDE DEFORMYLASE 1B), peptide deformylase [Arabidopsis thaliana] (TAIR:AT5G14660.2); similar to Peptide deformylase, mitochondrial precursor (PDF) (Polypeptide deformylase) (GB:Q9FUZ0); contains InterPro domain Formylmethionine deformylase; (InterPro:IPR000181) -0.517539104171853 -3.60228380208746 0.00422456633389084 1 3.5614632643047 12.7511875751060 -0.517539104171853 0.195672368730775
AT3G03180_at 5.07207391315154 4.8603967504939 4.75197331568654 4.95942956421490 5.7484933759993 5.76213042901681 4.68637376721693 4.99304376474356 3.82185419123085 4.61190608962097 4.52361697373479 4.37107642515156 4.9022434491342 4.52952776936860 4.56231354700287 4.87419853270633 4.77635963617426 4.6417221701064 4.71586656733507 0.212214511124485 0.225167473630976 0.218173454168605 0.210755837095691 0.223114304627479 0.229910393745201 0.216337353646976 0.222930615842832 0.227455629669362 0.235932117219816 0.216317597423309 0.213376778323189 0.215764769617451 0.224582827383406 0.212971581090453 0.215269710521034 0.218173540748335 0.216188196026199 0.213716877131241 3 3|0 +|/ 733540 734081 733844.444 733394 734490 + gene protein_coding_gene FALSE TRUE AT3G03180.1 Got1-like family protein similar to Got1-like family protein [Arabidopsis thaliana] (TAIR:AT3G49420.1); similar to Got1-like family protein [Arabidopsis thaliana] (TAIR:AT5G01430.1); similar to Got1-like family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47215.1); similar to Os03g0209400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049334.1); contains InterPro domain Got1-like protein; (InterPro:IPR007305) 0.333478992927329 3.6021564658487 0.00422550287720877 1 3.56126822261959 9.61965999122444 0.333478992927329 0.0738434151968308
AT2G29110_at 2.78367397823942 2.96977285686523 2.04915424039545 2.37557400573821 2.35954183097576 1.97345204560345 1.16159639053772 0.761236261861345 2.71845600632449 1.05525083756685 0.111991824678079 0.640198952169147 1.04098729732888 0.783930051977545 0.9543687705572 0.564017958370741 0.934673404672253 0.831951420755441 1.55598262323592 0.277279481510835 0.285248775788395 0.287217617561966 0.280980242025619 0.271556608225097 0.278920842607454 0.269039995472492 0.266108384275568 0.273353991484747 0.279472845845146 0.266108384275568 0.266108384275568 0.272859998282795 0.269279903926794 0.269088445488011 0.270524009677990 0.272100973091264 0.272094347719145 0.277183516461965 2 2 - 12514030 12514491 12514221.636 12513957 12517629 - gene protein_coding_gene FALSE TRUE AT2G29110.1 ATGLR2.8 (Arabidopsis thaliana glutamate receptor 2.8) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.8 precursor (Ligand-gated ion channel 2.8) (GLR2.8) [Arabidopsis Thaliana] (GB:Q9C5V5;GB:O81079); similar to ATGLR2.1 (Arabidopsis thaliana glutamate receptor 2.1) [Arabidopsis thaliana] (TAIR:AT5G27100.1); similar to ATGLR2.9 (Arabidopsis thaliana glutamate receptor 2.9) [Arabidopsis thaliana] (TAIR:AT2G29100.1); similar to ATGLR2.7 (Arabidopsis thaliana glutamate receptor 2.7) [Arabidopsis thaliana] (TAIR:AT2G29120.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.5 precursor (Ligand-gated ion channel 2.5) (GB:Q9LFN5); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.386718768421567 -3.60208528070395 0.0042260265289574 1 3.56115918716238 3.30891425916345 -0.386718768421567 0.116157741444109
AT1G08580_at 6.08928389429769 6.44012552366325 6.51957546710229 6.02224819022594 6.03171537665554 6.08468660920255 6.63499922626049 6.62951811657123 5.6541643876438 5.98307474630242 5.35537639677751 6.02528547689616 5.13356911652327 5.39802833770422 5.77421522223839 5.40613326934223 5.37888824599972 4.90791554593322 6.01105252607812 0.213159710769301 0.207400570496590 0.218742782747534 0.217662956163806 0.213989123610737 0.209825303807277 0.209620969027885 0.216922871500557 0.233736830021177 0.218065556905687 0.220089932263804 0.209784298460967 0.209381700643945 0.215471957057946 0.210461308485997 0.210514334128976 0.206832161955727 0.209625651275110 0.213265484865738 1 1|0 -|/ 2715301 2716330 2716023 2715082 2716407 - gene protein_coding_gene FALSE TRUE AT1G08580.1 similar to Pm52 [Prunus mume] (GB:BAE48663.1) -0.372131357324761 -3.60167845151753 0.00422902052698009 1 3.56053603000281 11.9591142195482 -0.372131357324761 0.105727797949032
AT2G34260_at 3.81437124005894 4.18669169660441 3.59894573238046 3.57690927402186 2.46865723964432 2.78017683580936 3.05242210504439 3.56013455674681 2.81723338955298 2.3569765759462 2.32423006027353 2.74967185020915 1.98038546074721 2.19900390282138 2.87825804206682 2.50778643734688 2.07169934543007 2.32293905278293 2.6885718937069 0.237429781731398 0.247688117087723 0.231069414051344 0.230036365070941 0.227638207516216 0.227851475749640 0.230677915057679 0.239253831564287 0.237595459841155 0.229195491600266 0.228748157659223 0.227638207516216 0.230849574120877 0.236088918667462 0.229121344793359 0.227638207516216 0.228711457906546 0.238137896994020 0.232709363956125 2 2|0 +|/ 14474188 14475230 14474669.5 14472928 14475610 + gene protein_coding_gene FALSE TRUE AT2G34260.1|AT2G34260.2 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to WD40 repeat-containing protein (ISS) [Ostreococcus tauri] (GB:CAL52871.1); similar to Os07g0660700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060533.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain YD repeat; (InterPro:IPR006530)|similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to WD40 repeat-containing protein (ISS) [Ostreococcus tauri] (GB:CAL52871.1); similar to Os07g0660700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060533.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.394456573295958 -3.60031375687685 0.00423907976547738 1 3.55844554380184 5.87987561271971 -0.394456573295958 0.121622409006733
AT3G57300_at 8.33428293862043 8.4262053779711 8.28358070361126 8.25729664170356 8.69374358691082 8.33285944714071 8.25525396683629 8.41732379379415 8.6038194068835 8.81979872289543 7.99607319895325 8.08224948835197 8.28981602216747 7.80865374172507 7.8856294501622 8.43623302024186 8.14621246864993 8.01882008548802 8.90311844679205 0.144594637836122 0.143959899440199 0.147871936160563 0.142912863027804 0.142949527265423 0.147017442206007 0.146189799498204 0.150366489103802 0.163782317608067 0.144728552167818 0.148396988399541 0.151305894935009 0.142312798489566 0.155058477628301 0.157393615150828 0.146512305816082 0.161842745276847 0.150971799753094 0.147822617499718 3 3 + 21217504 21218584 21218068.9 21210591 21218864 + gene protein_coding_gene FALSE TRUE AT3G57300.1 transcriptional activator, putative similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G12810.1); similar to SNF2-related domain-containing protein [Dictyostelium discoideum AX4] (GB:XP_629681.1); similar to INO80 complex homolog 1 [Homo sapiens] (GB:NP_060023.1); similar to transcriptional activator, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95950.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.329507174426712 -3.59742499617305 0.00426045439514487 1 3.55401979769293 16.8043382037358 -0.329507174426712 0.0704323080387326
AT1G08390_at 5.21637356814259 5.16523445877598 4.9351161586534 4.52330543626566 5.29649281412461 5.01869218146475 6.42422161884733 6.21651618229285 6.64504809278035 6.14649861019313 6.47590065414548 6.4146795320518 5.66035032197209 6.7829491267816 6.60523413136848 5.90446087113748 6.04733176344906 6.18384568927279 5.68521214293341 0.187793944094424 0.173994058358618 0.180897968429164 0.178456826228645 0.181312927210038 0.189586403000101 0.183035291283331 0.173994058358618 0.186271925468353 0.189059563674409 0.175724951220162 0.173994058358618 0.186645999930868 0.184507874757549 0.176834436969562 0.176614879273947 0.183448017075457 0.181172798696569 0.186438353688825 1 1|0 +|/ 2642239 2643064 2642594.5 2642211 2643282 + gene protein_coding_gene FALSE TRUE AT1G08390.1 nucleic acid binding similar to hypothetical protein [Ipomoea trifida] (GB:BAF36320.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) -0.355880206708763 -3.59741863059111 0.00426050161803488 1 3.55401004429543 11.5586258656082 -0.355880206708763 0.0935965024470004
AT1G51790_at 6.45922832548834 6.55764591817524 5.76945715294618 5.67390273831854 4.2224310561589 4.44249706460619 3.02181245123302 3.47826117533848 6.14187505239837 3.78994752224552 3.61309263948437 3.94433638290734 3.26205370943058 4.9599695942402 3.25852878906173 4.01515815121352 3.35911420247272 4.67238714460735 4.2832467263093 0.260855471529938 0.249627539604409 0.253234041955097 0.245977848046350 0.247583570406201 0.254587704422533 0.253312351538138 0.255646734820405 0.270970889354095 0.247019029707039 0.245641539890975 0.245782662777386 0.261363657663217 0.254657108125237 0.253867225263676 0.245641539890975 0.245641539890975 0.252133568112679 0.250333332290593 1 1|0 -|/ 19210527 19211160 19210804.5 19210384 19214240 - gene protein_coding_gene FALSE TRUE AT1G51790.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51800.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19210.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.352470660762577 -3.59736764131477 0.00426087990000564 1 3.55393191795020 9.26512274044726 -0.352470660762577 0.0908481201210675
AT3G53020_at 10.6616981912184 10.7514061218058 10.3522872103311 10.4190728252141 10.2606577694886 10.0794853991671 10.6974961111327 10.7054946540016 10.0656558970258 10.0890382830793 9.84413964494405 10.1315413382626 9.7391411861965 9.63887712893486 10.4056658275546 9.7354548977383 9.6021154859648 9.75405605624684 9.95031889711042 0.0853567859867207 0.082413185415013 0.0831149795132304 0.0859262481948526 0.085300374117141 0.0978910412687353 0.083368899104492 0.0836678776991436 0.0921904188068994 0.082803029191201 0.0827816660037112 0.0831807560549528 0.0819361325154589 0.0897906713495027 0.0833853122483695 0.084959968401537 0.0837332889037539 0.0919235838415643 0.0838431363804551 3 3 - 19671752 19672477 19672094.091 19671495 19673003 - gene protein_coding_gene FALSE TRUE AT3G53020.1 STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20. Identical to 60S ribosomal protein L24-2 (Protein SHORT VALVE 1) (RPL24B) [Arabidopsis Thaliana] (GB:P38666;GB:Q33DV0;GB:Q56Z81;GB:Q9LF90); similar to RPL24A (RIBOSOMAL PROTEIN L24), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G36620.1); similar to TRASH [Medicago truncatula] (GB:ABE80118.1); contains InterPro domain TRASH; (InterPro:IPR011017); contains InterPro domain Ribosomal protein L24E; (InterPro:IPR000988) -0.302389190915453 -3.59735955806243 0.0042609398716484 1 3.55391953267474 20.436638937696 -0.302389190915453 0.0368712995900193
AT4G22540_at 9.07447549006855 9.22275817578246 9.0085325199986 8.95581445451686 9.54062412151275 9.5145039315759 8.57820699405709 8.33783083752346 8.56093600804111 8.69340140554542 9.16484955897418 8.6931143153517 8.87797510613564 9.11386424191806 8.8866101354846 8.35866297588177 8.63659410843796 8.74102976158573 8.66125516914578 0.120561839778767 0.112782933341443 0.122789142474443 0.113356073941537 0.117550711726086 0.124638463613279 0.117873470886117 0.124420997578255 0.119315066942098 0.113854183205670 0.111946163000792 0.114873362631521 0.111235397694469 0.122526859313398 0.118795293063176 0.116351277586898 0.127123396857069 0.114965021019388 0.116223476222355 4 4|0 -|/ 11860984 11862041 11861439 11860455 11866375 - gene protein_coding_gene FALSE TRUE AT4G22540.1|AT4G22540.2|AT4G22540.3 oxysterol-binding family protein|oxysterol binding similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol binding [Arabidopsis thaliana] (TAIR:AT4G12460.1); similar to putative oxysterol-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK15443.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993)|similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol binding [Arabidopsis thaliana] (TAIR:AT4G12460.1); similar to putative oxysterol-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK15443.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648) 0.311053773551785 3.59596533559546 0.00427129697568589 1 3.55178318296518 17.7529025088204 0.311053773551785 0.0499255687671852
AT4G39800_at 10.5953369021851 10.9126070102552 10.7365236315130 10.7669284777894 11.0817365849366 10.9308217099829 12.4936316675192 12.5308087108219 11.9885031834417 11.8449669367428 12.1836190524295 12.2253013266053 12.5732374339561 12.1840296331750 11.8755979835701 12.1797133825057 11.6896031543153 11.8892894248443 12.1280470550342 0.0742175599969349 0.0728055802135822 0.0729398688443668 0.0743125640225397 0.0729010914964137 0.0737561687263875 0.0771598810432925 0.0730613000146775 0.076821627831033 0.0724200255959262 0.0720349221727067 0.0710986279114854 0.0710986279114854 0.072501311620727 0.0716114397233705 0.0710986279114854 0.0817338702248131 0.073055079110001 0.0716215010195228 4 4|0 -|/ 18469687 18470482 18470052 18469342 18471961 - gene protein_coding_gene FALSE TRUE AT4G39800.1 MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) [Arabidopsis Thaliana] (GB:P42801;GB:O65667); similar to inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative [Arabidopsis thaliana] (TAIR:AT5G10170.1); similar to inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 [Arabidopsis thaliana] (TAIR:AT2G22240.1); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q96348); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q41107); similar to myo-inositol-1-phosphate synthase (GB:AAA85390.1); contains InterPro domain Myo-inositol-1-phosphate synthase, GAPDH-like; (InterPro:IPR013021); contains InterPro domain Myo-inositol-1-phosphate synthase; (InterPro:IPR002587) -0.320608469727127 -3.59567412305148 0.00427346354649843 1 3.55133693602407 23.2996599947078 -0.320608469727127 0.0613654395579733
AT1G42560_at 1.58727215042902 1.91225746113645 1.50066471896183 1.66324244158823 1.63174494508894 1.90727996347213 2.20057097271626 2.62257857967772 1.73445888359134 2.15967736287531 1.25091719717022 1.42178475080313 1.76891366573764 1.60574736960348 1.42911023994594 1.62936230682187 2.38894503551423 1.56806270222647 2.03198563047482 0.232775153024829 0.231771981374071 0.237440632329228 0.239115390268444 0.231108835982933 0.238953892270738 0.239506157496374 0.249538726074743 0.244510017369233 0.235048570769726 0.238691671391903 0.232509893170906 0.23968242330025 0.235143240410564 0.247398763495175 0.233374098011634 0.242072763109402 0.241029220857577 0.23286075610178 1 0|1 /|- 15982860 15983803 15983250.375 15982575 15984835 - gene protein_coding_gene FALSE TRUE AT1G42560.1 ATMLO9/MLO9 (MILDEW RESISTANCE LOCUS O 9); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO9 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO10. The gene is expressed during early seedling growth, in cotyledon vascular system, in flowers (with strong expression in anthers) in siliques and fruit abscission zone; not expressed in roots, or in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 9 (AtMlo9) (MLO9) [Arabidopsis Thaliana] (GB:Q94KB4;GB:Q9C855;GB:Q9C8E5); similar to MLO5 (MILDEW RESISTANCE LOCUS O 5), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G33670.1); similar to MLO-like protein 9 (AtMlo9) (GB:Q94KB4); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) -0.373727662107349 -3.59349479369321 0.00428971336518349 1 3.54799710500389 3.682316087863 -0.373727662107349 0.107524885076637
AT1G50460_at 5.31517930401845 5.39283235123304 5.7233833282195 5.47950476656442 5.94253023145168 6.08465529881744 5.29882837064946 5.26897122669503 5.60048097431565 4.95755045127307 5.76647738175022 5.0807926864116 5.38868516234478 5.23631398559821 4.83699744622184 5.32396845434357 5.44755346935508 5.81487838345944 5.12435268167988 0.202429378319079 0.202727144145224 0.202429378319079 0.207682920061234 0.211387786285588 0.203299908651851 0.204159630971545 0.210154754293350 0.221145741220001 0.214048000907630 0.215909006377419 0.207171652217195 0.208938706240273 0.211619513509585 0.225330647603616 0.205680823191462 0.209121056952858 0.209349581354994 0.209525140975382 1 1 + 18700285 18701048 18700647.364 18697352 18701327 + gene protein_coding_gene FALSE TRUE AT1G50460.1 hexokinase, putative Identical to Hexokinase-3 (EC 2.7.1.1) [Arabidopsis Thaliana] (GB:Q9LPS1); similar to ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT3G20040.1); similar to hexokinase 6 [Nicotiana tabacum] (GB:AAS60198.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) 0.311531297605164 3.59259576491841 0.00429643536396980 1 3.54661919588473 10.8579454798437 0.311531297605164 0.0509256484819065
AT1G11330_at 6.98870008611203 7.18953995040993 7.2491827534046 7.22644785174687 4.78017686044328 5.25447713141443 4.42521265178793 4.62357665749501 7.5099200051085 5.01036659047043 6.97709277962607 7.79498107415248 5.9711737000393 6.94010978478947 6.51936000813354 6.72989302606486 5.6018425052096 7.07086901726669 6.39674901335568 0.230446685826422 0.240093910706935 0.244191828779227 0.244061757527054 0.247201698256969 0.240743475995022 0.243901661964988 0.245418702267479 0.233308689108777 0.236200667907875 0.241486273698136 0.241770917521481 0.230276971596025 0.232077305364291 0.229552273754173 0.241749695446954 0.241016539432475 0.238595237521430 0.232591840058713 1 1|0 +|/ 3812927 3813388 3813167.2 3810221 3813607 + gene protein_coding_gene FALSE TRUE AT1G11330.1 S-locus lectin protein kinase family protein similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT1G11300.1); similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11350.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.357900256699889 3.59237906656433 0.0042980572305935 1 3.54628705754313 12.4703361294627 0.357900256699889 0.0955980266349225
AT4G01090_at 5.87212910408051 6.27472016434877 6.21355944610501 6.30075382388375 6.57851943593354 6.19228809565525 6.18438984704614 6.04490628147618 5.63191548033804 5.88865207542832 6.96978777327097 5.60436862774172 6.18319164697455 6.59534383521068 5.600859856784 6.07516622478694 6.05594006282107 5.97361762427009 5.37160491743427 0.208977632747106 0.211594172891961 0.217278536912924 0.208977632747106 0.215093904533407 0.231415760732492 0.214358342286294 0.222332190920498 0.228485690714837 0.209860454046817 0.212341730105158 0.208977632747106 0.208977632747106 0.216660767527001 0.217312088718554 0.215310581156653 0.218414327746446 0.228798725543961 0.210611547574934 4 4 - 470981 471637 471296.727 470515 473792 - gene protein_coding_gene FALSE TRUE AT4G01090.1 extra-large G-protein-related similar to extra-large G-protein-related [Arabidopsis thaliana] (TAIR:AT1G01440.1); similar to unknown [Striga asiatica] (GB:ABE66402.1) 0.364402074952725 3.59219610804051 0.00429942706444448 1 3.54600662918726 12.0891625819242 0.364402074952725 0.100656651956615
AT4G26210_at 6.350430133366 6.74947583962936 6.04018974880028 6.28796280750172 5.94316106897618 5.67937705105694 6.59371331708846 6.62801795730513 5.95141072401879 5.68610270429397 5.41669359877318 5.79145393876043 5.3361643452749 5.62055882781891 6.08416374070089 5.65013874567857 5.48964459493992 5.56617944766398 5.57248015275403 0.194325895562799 0.198763977600401 0.189226834332581 0.189792120379714 0.190123208593305 0.204170403085416 0.185547811123832 0.195890994808493 0.187877346138124 0.192345851737633 0.189554941793567 0.187941122266338 0.188032249680824 0.185446137795681 0.191376457884575 0.187447742174766 0.193935743024852 0.185446137795681 0.189601501191265 4 4 + 13282402 13283089 13282767.818 13281946 13283411 + gene protein_coding_gene FALSE TRUE AT4G26210.1|AT4G26210.2 mitochondrial ATP synthase g subunit family protein similar to mitochondrial ATP synthase g subunit family protein [Arabidopsis thaliana] (TAIR:AT4G29480.1); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 complex, subunit G, mitochondrial; (InterPro:IPR006808) -0.355013257417183 -3.59093862952741 0.00430885414402273 1 3.54407914411791 11.9620605814523 -0.355013257417183 0.0934155071481752
AT2G20930_at 8.37743647454199 8.57699007035658 7.930072155623 8.27357281492379 8.28106966357547 7.78104438483749 7.48335803186594 7.14759618547322 7.36945503809914 7.25459260750839 8.07174241735726 8.56101581891803 7.67592300639086 7.74576065245166 8.67650544446017 7.82952712434955 7.26974240842937 7.7563735132237 7.34200406747873 0.190103666271044 0.186814308549634 0.19098019920361 0.186814308549634 0.186814308549634 0.193600983513367 0.191022674809697 0.191212025185445 0.206941168855284 0.197003112839354 0.192917917687836 0.186814308549634 0.189252607357993 0.198358003003406 0.186814308549634 0.187263812324547 0.207555602777721 0.201826289759539 0.205868157637448 2 0|2 /|- 9007878 9008558 9008196.7 9007700 9008818 - gene protein_coding_gene FALSE TRUE AT2G20930.1 similar to intracellular transporter [Arabidopsis thaliana] (TAIR:AT1G80500.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46590.1); similar to Os09g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063814.1); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.398200562341329 3.59086576209581 0.00430940106973788 1 3.54396744661785 15.6165629905962 0.398200562341329 0.124860545441429
AT3G46940_at 3.69399157202529 4.50732061828056 3.71588513146044 3.81026604661699 3.33432565623499 3.28931713604421 4.75912117538661 4.64149016050505 4.25563735279814 4.84040655802037 4.8042359118662 5.24348801592839 4.2542360373347 4.67596971883754 5.18426506151579 4.34960099823311 4.35474600768221 4.57961699172657 4.91302777885778 0.232721954443349 0.224833981851614 0.231424449622734 0.234102152887478 0.232938294808931 0.234953720896297 0.228325422579831 0.231986432637497 0.234860602578923 0.228847989398811 0.225265107934965 0.234476871416489 0.229077870202299 0.235955866176527 0.234095804769380 0.225491461738644 0.232128735409674 0.230760362396833 0.233737315782295 3 3 - 17299372 17299813 17299614.273 17299179 17299937 - gene protein_coding_gene FALSE TRUE AT3G46940.1 deoxyuridine 5'-triphosphate nucleotidohydrolase family similar to Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) (dUTP pyrophosphatase) (P18) (GB:P32518); contains InterPro domain DeoxyUTP pyrophosphatase; (InterPro:IPR008180); contains InterPro domain DeoxyUTP pyrophosphatase subfamily 1; (InterPro:IPR008181); contains InterPro domain dCTP Deaminase; (InterPro:IPR003232) -0.425976554647543 -3.58465332073417 0.00435629413961764 1 3.53444246064303 8.64419489012726 -0.425976554647543 0.143361424520512
AT1G22840_at 10.5904468407659 10.7152165663894 11.0399479476461 11.0199436573477 10.2979621310685 10.2102108746541 10.2902721381139 10.5700369515520 10.1543931732076 10.0693262777765 10.6431221432881 10.8443015246742 10.4903474936370 10.5969727878269 10.7996242117974 10.4605389493965 10.1672779029654 10.4687160346240 9.8685737386068 0.0836749367293022 0.0834004664383335 0.0856987414761924 0.0869251928414113 0.0848653019573916 0.08978097727445 0.0906004715169513 0.0867818133733973 0.0901987345615833 0.0873358738501444 0.0864884970928191 0.0836164569959298 0.0861487785299946 0.08662717035977 0.0873062396995529 0.0834004664383335 0.0914232390606972 0.0910644922574594 0.0856072893098225 1 1|0 +|/ 8079374 8080251 8079912.5 8079278 8080563 + gene protein_coding_gene FALSE TRUE AT1G22840.1 ATCYTC-A/CYTC-1 (CYTOCHROME C-1); electron carrier Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. Identical to Probable cytochrome c At1g22840 [Arabidopsis Thaliana] (GB:O23138); similar to CYTC-2 (CYTOCHROME C-2), electron carrier [Arabidopsis thaliana] (TAIR:AT4G10040.1); similar to Cytochrome c (GB:P62772); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c; (InterPro:IPR012125); contains InterPro domain Cytochrome c, class I; (InterPro:IPR003088); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Cytochrome c, class IA/ IB; (InterPro:IPR002327) 0.314310631484856 3.58462085514707 0.00435654057381986 1 3.53439267357799 20.8865681522204 0.314310631484856 0.0552519639046398
AT3G23050_at 9.45437737086113 9.60662270767913 9.32606898711033 9.32978869864993 10.1908179566285 9.91196458790921 9.73579973184173 9.66095967741386 10.1100000960566 9.8858657581718 10.6518052532941 11.1548197208865 10.7190741494025 10.6286397723565 10.8170829117862 10.7905834304404 10.2528547306923 10.7710907282599 10.5077940981515 0.0945887997941145 0.092481691279614 0.0943231664163238 0.0907170651568809 0.0906036646732109 0.0945826805952044 0.0950595968733384 0.0983236678274203 0.102361769799521 0.0949425678990595 0.0948465536366266 0.0927863747139273 0.0939094589243208 0.102903954706267 0.100431308854490 0.0952835709625417 0.0979321655272907 0.0946945290953755 0.0957088235901804 3 3|0 +|/ 8194929 8195769 8195418.5 8194686 8197160 + gene protein_coding_gene FALSE TRUE AT3G23050.1|AT3G23050.2 IAA7 (AUXIN RESISTANT 2); transcription factor|IAA7 (AUXIN RESISTANT 2) Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Identical to Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7) (Auxin resistant 2) (IAA7) [Arabidopsis Thaliana] (GB:Q38825;GB:Q8LAK1); similar to IAA14 (SOLITARY ROOT), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14550.1); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84710.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.315288685986023 3.58394915152529 0.00436164244940725 1 3.53336256924917 20.0976152087283 0.315288685986023 0.056489218390571
AT3G49250_at 3.16660119572808 3.09533402358941 2.43786143588266 2.29386186023616 2.77552525368508 2.54411204177618 3.35878202995321 3.61863062166859 3.51285971331728 3.17330959638252 3.45476541954143 3.72550346288566 3.47546545465307 3.43211819738615 3.68352358798982 3.04501383963963 3.32843477742180 3.61976919911506 3.27918963001339 0.162588861776647 0.162044618668602 0.16329097156109 0.165658457205462 0.165007357019149 0.165219722417595 0.172667665955001 0.168059503995901 0.164111381198239 0.162271422011830 0.164172290906034 0.165141987875100 0.162044618668602 0.162044618668602 0.168468721296106 0.162697980454785 0.171818618915629 0.1647359528649 0.169655506016337 3 3|0 -|/ 18269816 18270563 18270150.8 18269246 18271983 - gene protein_coding_gene FALSE TRUE AT3G49250.1 similar to ATP binding [Arabidopsis thaliana] (TAIR:AT5G24280.1); similar to AT3g49250/F2K15_110 [Medicago truncatula] (GB:ABE81692.1) -0.324104445374228 -3.58280563735900 0.00437034208781661 1 3.53160880386121 6.30751883559833 -0.324104445374228 0.0663249361580332
AT3G53730_at 10.3486591099807 10.4582744187007 10.2881932361100 10.5450970842033 10.8183036400545 10.5939264778763 10.3005558173708 10.3030893539948 10.0723545398697 10.0728432384775 10.5855286519589 10.9332455891119 10.1675136834017 10.3653944057226 10.9153938186603 10.6152306571827 10.1860545639813 9.92428075206245 9.94591056990398 0.0966629444637186 0.096150515175710 0.103175210024904 0.0949324498779559 0.0946418082356122 0.102154640923611 0.094243015494466 0.0950414171285092 0.096714107274526 0.0951183162192835 0.095172728874691 0.0923190919931057 0.09708427203476 0.0962244493639673 0.0930954646141504 0.092179658706148 0.0925788018525356 0.100295791993205 0.0937568245757071 3 3 - 19923637 19923887 19923765 19923472 19924011 - gene protein_coding_gene FALSE TRUE AT3G53730.1 histone H4 Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Nicotiana tabacum] (GB:BAF36442.1); similar to Os01g0835900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044729.1); similar to Histone H4 homologue [Sesbania rostrata] (GB:CAB01913.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H4; (InterPro:IPR001951); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.319973125196228 3.58204577194061 0.00437613288150948 1 3.53044335209805 20.702987249625 0.319973125196228 0.0620025259280083
AT1G23750_at 4.40794226300805 4.10853366849482 3.69192916914965 3.53764639024887 3.65462827540727 3.50157052276139 4.47385611527173 4.37739595362186 4.48522266519295 4.17324060214777 5.88701024504203 5.8082647529158 5.19947803644705 5.67214946913718 6.12610754744208 5.34143712359766 4.84884710011928 5.6525370942596 3.86280304053435 0.190320195342435 0.191126333002150 0.198535660841051 0.193580711309884 0.203872028976375 0.19022693323072 0.195291470351594 0.190124325062058 0.191378166072688 0.190801641303658 0.193041824503924 0.194505684276151 0.190994138087941 0.203625294967496 0.190124325062058 0.195704066857034 0.202704477257107 0.195200180796823 0.196088011542834 1 1 + 8400629 8401133 8400843.545 8400143 8401476 + gene protein_coding_gene FALSE TRUE AT1G23750.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G10590.2); similar to unknown [Medicago sativa] (GB:AAZ32857.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) 0.323867537227205 3.58189381548486 0.00437729186141122 1 3.53021028013900 8.83955497328467 0.323867537227205 0.0661648251368355
AT1G14290_at 6.70085948075994 7.23375602521088 5.03716434893394 5.64327556996975 6.03751980310359 5.65329304808663 7.4453140022458 7.23573137931999 7.85492232381165 7.02181702918179 9.23922828925392 8.81374094649307 8.60368846139588 8.83232793360867 8.14444604003752 8.01661297755034 6.81309401468912 8.5201893487566 8.26370063100598 0.297939246377791 0.276671853758055 0.293289009958886 0.282600535255498 0.278945639204413 0.275841013915286 0.290019457550628 0.275841013915286 0.292292280202645 0.278592636013981 0.280603987877827 0.277831676479657 0.281551756691051 0.284459201966711 0.278131422333966 0.275841013915286 0.294147148551212 0.284771625439491 0.277405415746692 1 1 - 4880373 4881569 4880726.455 4880046 4881955 - gene protein_coding_gene FALSE TRUE AT1G14290.1 acid phosphatase, putative similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G69640.1); similar to Sterol desaturase family protein [Solanum demissum] (GB:AAU93587.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088); contains InterPro domain Molybdopterin binding domain; (InterPro:IPR001453) -0.450833011277003 -3.58145506227342 0.00438064002978799 1 3.5295373038588 14.4165622052736 -0.450833011277003 0.158881204526196
AT1G61150_at 7.7107027118806 7.96721826032222 8.00002507171538 8.08228399033638 8.5511281498029 8.09788412312703 7.77805403025474 7.58749616591364 7.2507515200797 7.10482811889828 7.01082015209516 7.10500679573398 7.35643340363566 7.53841025111335 6.863159388144 7.34716505108091 7.40972835869688 6.92513736885336 6.34241480811397 0.212595784544182 0.199752511649315 0.201513783648643 0.199088877255003 0.199097855830909 0.200892360321863 0.201203632100134 0.204604867264030 0.206427490404855 0.196591103644781 0.200167201647372 0.202851933344556 0.199067405854923 0.198042539425622 0.195289712544472 0.201761758477530 0.202082012656369 0.201466575305506 0.210213787820757 1 1 + 22547035 22547990 22547550.636 22546189 22548309 + gene protein_coding_gene FALSE TRUE AT1G61150.1|AT1G61150.2|AT1G61150.3|AT1G61150.4|AT1G61150.5|AT1G61150.6|AT1G61150.7 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09300.1); similar to pg4 [Hordeum vulgare] (GB:AAV65331.1); similar to Os03g0235100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049484.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09300.1); similar to pg4 [Hordeum vulgare] (GB:AAV65331.1); similar to Os03g0235100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049484.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09300.1); similar to pg4 [Hordeum vulgare] (GB:AAV65331.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144) 0.358556827728899 3.58085115660145 0.00438525280689089 1 3.52861097820632 15.0187561021857 0.358556827728899 0.0970201311013023
AT2G36680_at 6.05643213495795 6.05892953319337 6.17630960302795 6.41760827500206 6.46381956303222 6.32242414172066 5.87384546158525 5.46145396687381 5.64877754620828 5.05329508671076 5.31239903345921 5.38769599384925 5.41801048816779 5.56428116015804 5.47374606890894 5.62846228780856 5.48220288914455 5.57786273861783 5.1159947118313 0.184192606900837 0.189408179416119 0.191005606008278 0.189219739230137 0.184824105029457 0.189317827042659 0.180635718822383 0.198867501059343 0.198245128086884 0.187025149396658 0.184651733738311 0.182591417561710 0.181746919690033 0.186800091579076 0.186275402696637 0.182402164918526 0.196857850065820 0.185595432694458 0.191524262777613 2 2 - 15376404 15377377 15376986.091 15375877 15377925 - gene protein_coding_gene FALSE TRUE AT2G36680.1|AT2G36680.2|AT2G36680.3|AT2G36680.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53120.1); similar to Modifier of rudimentary protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94363.1); contains InterPro domain Modifier of rudimentary, Modr; (InterPro:IPR009851) 0.34513429457031 3.57896099468227 0.00439972267669512 1 3.5257114339066 11.4804886836397 0.34513429457031 0.0862310215530735
AT3G47450_at 5.51861193747275 5.45927487121974 5.52706539512635 5.13034758033047 5.43186792004368 5.1093545197088 6.4782968604088 6.09033172643371 5.48069104397389 5.87529977850877 5.58470100132417 5.98676881837161 5.34974038583059 5.34066015302319 6.11351599771869 5.46640041931368 5.23018032112992 5.18728905047583 5.74671056312669 0.207575663304596 0.208203441122209 0.212288401301981 0.211589325280343 0.202614230879990 0.227914307398142 0.209105537586415 0.211185892982616 0.210287083387572 0.207308359336973 0.209524950504747 0.204494282212795 0.227806760572458 0.207826673496848 0.202614230879990 0.206979583108348 0.220253688340141 0.223563365632612 0.219153718571401 3 3|0 -|/ 17494263 17494948 17494583 17494053 17497332 - gene protein_coding_gene FALSE TRUE AT3G47450.1|AT3G47450.2 ATNOS1/NOS1; nitric-oxide synthase|ATNOS1/NOS1 Encodes a distinct nitric oxide synthase that regulates growth and hormonal signaling in plants. NOS1 also attenuates oxidative stress and reactive oxygen species (ROS). Located in mitochondrion it also seems to be involved in regulating leaf senescence and cell death. AtNOS1 is involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. Identical to Nitric-oxide synthase 1 (EC 1.14.13.39) (AtNOS1) (NOS1) [Arabidopsis Thaliana] (GB:Q66GP9;GB:Q9STX8); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT3G57180.1); similar to nitric oxide synthase [Oryza sativa (japonica cultivar-group)] (GB:ABG25042.1); similar to Os02g0104700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045614.1); contains domain GTP-BINDING PROTEIN-RELATED PLANT/BACTERIA (PTHR11089:SF3); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain GTP-BINDING PROTEIN-RELATED (PTHR11089) -0.377731719276373 -3.57887641280585 0.00440037132964334 1 3.52558167515691 11.2097975914772 -0.377731719276373 0.111541450298404
AT3G11760_at 4.09771738466205 5.21170236097096 3.16409448834012 3.18509502964604 4.39117330628184 4.23223087775214 3.71262973879524 4.02341650262029 4.47505585831323 4.73919324175019 4.81470362537568 4.8766261245048 3.86622748467334 4.12912239417349 4.76828252050442 4.1991177515719 3.92344906748868 3.77902301721481 5.26849671179317 0.224930169294882 0.229500934955000 0.23746851576747 0.226240016331948 0.231941444900846 0.225622036571075 0.235733289111077 0.232704393865521 0.242606922847173 0.226916361816576 0.231069149979567 0.232616995936472 0.229470386911192 0.224930169294882 0.239527331373895 0.231402878977062 0.233999413889183 0.229807193541859 0.241073488172457 3 3 + 3720534 3721081 3720825.818 3718535 3721257 + gene protein_coding_gene FALSE TRUE AT3G11760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04860.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97907.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84189.1); similar to Os03g0649000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050782.1) -0.525615505177119 -3.57848727244007 0.00440335689108235 1 3.52498467771101 8.56333292887054 -0.525615505177119 0.20205602416953
AT2G24220_at 5.36161117252743 5.66379144747696 4.47824973862552 5.18356267087213 6.16877629434108 5.69408747617809 5.89419155772158 5.80759987846914 3.66506352476201 4.44066401840316 5.25721960292041 5.12898719220557 5.43341988414058 5.31179692865379 5.18391565495018 5.46129106628936 5.8497209646454 5.66788402928634 4.54534711403928 0.210672503118041 0.204141902324902 0.210868085096048 0.208135750330783 0.212875000343827 0.216879020651293 0.211897176048944 0.207178841036602 0.212139330031319 0.211458716224508 0.210412036818030 0.207442139256406 0.218632018528457 0.208797097928441 0.208846618233474 0.204151460876150 0.207668154456946 0.210899173839103 0.212927123618653 2 2 + 10308280 10308732 10308487.364 10307196 10308867 + gene protein_coding_gene FALSE TRUE AT2G24220.1 ATPUP5 (Arabidopsis thaliana purine permease 5); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP11 (Arabidopsis thaliana purine permease 11), purine transporter [Arabidopsis thaliana] (TAIR:AT1G44750.1); similar to Os09g0467400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063425.1); similar to Os09g0557500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063904.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD19737.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.447062530303532 3.57807312835484 0.00440653657748401 1 3.52434930395695 10.3458859300871 0.447062530303532 0.156861127421377
AT1G54570_at 3.62522653754524 3.73091528390447 3.47079619706422 3.41916995421311 3.02955523239159 3.37498006629488 2.83664408322017 3.03156948662359 2.32602797110637 2.27443245537445 2.94321679928545 2.53551292251934 2.92313191492902 3.13341990320540 3.24988271010646 2.72454471170150 3.09695154695172 3.11297793212556 2.37358053328521 0.212209622328351 0.214801984057286 0.20324311208736 0.205788508968408 0.211039780125515 0.20324311208736 0.20324311208736 0.210499347932690 0.216458074522112 0.20324311208736 0.20324311208736 0.203249384109567 0.206813962036587 0.206487398742401 0.208052812237152 0.20324311208736 0.209095154189616 0.207363470711975 0.207306772673014 1 1|0 -|/ 20384321 20385351 20384779.6 20384145 20388699 - gene protein_coding_gene FALSE TRUE AT1G54570.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G26840.1); similar to Esterase/lipase/thioesterase; Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE83644.1); similar to Os01g0362100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043027.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.328905499924315 3.57795617875754 0.00440743491296489 1 3.52416987843566 5.95967466766969 0.328905499924315 0.0715931157492395
AT3G21520_at 2.16063261832637 2.40546823710558 3.44152833198298 4.31147071623749 1.56094196046636 1.73014581076079 0.92500347831423 0.642313260359801 1.39589668454336 1.41814537400991 0.877395753265855 1.61776069299513 1.06350310372733 0.83614277590129 1.21799460644042 1.06975692078101 1.21357146161299 0.743183179537797 1.33063976106879 0.264190206165593 0.255165254294542 0.28366948396872 0.307030032123653 0.253973056874738 0.257821141735095 0.256444369259849 0.253973056874738 0.253973056874738 0.270383251974550 0.276044677787240 0.261629242225416 0.253973056874738 0.258315369462399 0.258241299039455 0.265418385911645 0.264213160834579 0.262146661796348 0.259560569225116 3 3 + 7582079 7582602 7582350.091 7581965 7582799 + gene protein_coding_gene FALSE TRUE AT3G21520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21550.1); similar to Os07g0645300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060454.1); similar to Os03g0370400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050198.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10653.1); contains InterPro domain Protein of unknown function DUF679; (InterPro:IPR007770) 0.463010130788725 3.57723968399432 0.00441294270746277 1 3.52307059280875 3.37792513585591 0.463010130788725 0.166464548636916
AT2G26660_at 8.19757035747604 8.11935834276598 7.4241466732346 7.5714485999325 7.79125584116374 7.36871905853422 8.15687856469935 8.26949455830131 7.14258114014364 7.61226619054896 7.42328616192038 7.7372464754458 7.48913481116313 7.10312153772798 7.30983231117793 7.15542637838376 7.27593812402729 7.30302698027133 7.38646416533783 0.181084997368440 0.166626618093756 0.179431020872934 0.171410076217776 0.172827636115842 0.176919665983733 0.171865803054366 0.178766187777021 0.177398987146694 0.172495877177760 0.174179088733527 0.169501537936911 0.171282930111294 0.173888210073454 0.172683187626279 0.171967587874599 0.173029749193631 0.170547004384082 0.167985837646586 2 2 + 11347375 11347700 11347536.545 11346010 11348028 + gene protein_coding_gene FALSE TRUE AT2G26660.1 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G20150.1); similar to SPX, N-terminal [Medicago truncatula] (GB:ABE90284.1); similar to Os06g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058013.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331) -0.338871740211592 -3.57650023959566 0.00441863435146608 1 3.52193604166745 15.2273908809426 -0.338871740211592 0.0809915556740573
AT1G03687_at 3.51535729041472 3.48863039987733 3.24297743707289 3.14719781122188 3.65969107715412 3.1166135589888 4.08041180935199 4.05750116247001 3.74552816381118 3.83714831875602 3.49094456214565 3.93913761247079 3.34879559009577 3.45790407898277 4.22604395926406 3.42207097225523 3.43344988383187 3.81782274931846 3.99982952559082 0.206584739751521 0.210252213535205 0.215985755395759 0.213685170398181 0.218978775771809 0.215037869874991 0.206179041804611 0.210023109857162 0.219513062520425 0.208947807066015 0.205431316980138 0.207488866632726 0.212767277607854 0.219849331740175 0.215152455195304 0.208383942377777 0.214944511134934 0.209429747411764 0.213145054800816 1 1|0 +|/ 919327 920224 919823.6 918299 920507 + gene protein_coding_gene FALSE TRUE AT1G03687.1|AT1G03687.2 similar to COG3148: Uncharacterized conserved protein [Yersinia intermedia ATCC 29909] (GB:ZP_00833766.1); similar to Os06g0342600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057573.1); contains InterPro domain DTW; (InterPro:IPR005636) -0.356334677213094 -3.57630063719963 0.00442017202433467 1 3.52162977632441 7.2899758243681 -0.356334677213094 0.095626780302815
AT3G49310_at 1.8405292002034 2.27612597092613 1.77276529294217 1.86909622045693 1.98308791862616 2.08652283991206 1.94193972840259 1.64457729070883 1.77372393291715 1.90607747469093 2.56437190310625 2.74425511907948 2.44005199934531 2.52913368385298 2.42608412300299 2.43498089666133 2.80322939537668 2.31699357049865 1.79419499891323 0.183085488626515 0.177680589245974 0.192239700816714 0.184623586822748 0.188458094870982 0.181902998467391 0.182925558465222 0.191004136242401 0.184417054864386 0.179372153054565 0.183830705454885 0.184684952782393 0.189447618819696 0.183089522814106 0.194306024976007 0.185307695425381 0.183749543028440 0.179882857112688 0.181429719891931 3 3|0 -|/ 18296304 18296940 18296715.667 18295842 18299044 - gene protein_coding_gene FALSE TRUE AT3G49310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64650.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27720.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93637.1); similar to Os03g0114800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048746.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509) 0.35489856897456 3.57619017699554 0.00442102321117284 1 3.52146028697276 4.10535708537523 0.35489856897456 0.0944928218773187
AT3G08510_at 10.7529655276812 10.8433830814735 10.6838916910458 10.7412687548266 11.3878675611653 11.0762808202534 10.5427089459417 10.3227176829996 10.0454051154245 10.3435544669840 10.7432748886317 10.6536739246124 10.7429728329352 10.5712187976969 10.2289223919734 10.3952229989111 10.4841216999623 10.5374429535750 10.3613922518099 0.086439189557574 0.0853536102561522 0.0871470372007242 0.0877663365168685 0.0874307223347684 0.0853536102561522 0.0858323597040149 0.0853536102561522 0.0954643519241095 0.0878855815709036 0.0868490266920019 0.0853536102561522 0.0853536102561522 0.0945363449389876 0.0917269372591019 0.0872621924492509 0.0928241293539324 0.0870997693658443 0.0865091707034695 3 3 - 2582650 2583520 2582984.636 2582373 2585857 - gene protein_coding_gene FALSE TRUE AT3G08510.1|AT3G08510.2 ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT5G58700.1); similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT2G40116.1); similar to phosphoinositide-specific phospholipase C, putative [Arabidopsis thaliana] (TAIR:AT3G55940.1); similar to phosphatidylinositol-specific phospholipase C [Glycine max] (GB:AAA74441.1); similar to phosphoinositide-specific phospholipase C P13 (GB:AAB03258.1); similar to phosphoinositide-specific phospholipase C [Brassica napus] (GB:AAD26119.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909); contains InterPro domain Phosphatidylinositol-specific phospholipase C, Y domain; (InterPro:IPR001711); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoinositide-specific phospholipase C (PLC); (InterPro:IPR001192); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.325686215131631 3.57616864663663 0.00442118913997409 1 3.52142725079833 21.1912473027284 0.325686215131631 0.0685589013639974
AT2G03430_at 6.36577048298519 6.61735125268005 6.60263220957418 6.40947185151155 7.10956613571736 6.43332681596358 6.25424317047482 6.16449096224266 5.79309081967199 5.45670701046169 6.08964214841119 6.32957849654672 5.71052440045017 6.45091745539832 6.01658710723399 6.12478930427627 5.80291170789519 5.72225156136676 5.28103261228033 0.230573917404501 0.219903744395183 0.219903744395183 0.223724250237458 0.225311443878661 0.233920528962922 0.231649908605624 0.234503257011966 0.234707351886471 0.231188942373822 0.219903744395183 0.225400999592224 0.231036982168334 0.227827954577173 0.220024909185780 0.219903744395183 0.223865463241846 0.225735993645435 0.226319488934609 2 0|2 /|- 1036196 1037015 1036442.375 1036029 1037629 - gene protein_coding_gene FALSE TRUE AT2G03430.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G19150.1); similar to putative ankyrin [Oryza sativa (japonica cultivar-group)] (GB:AAK16185.2); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.404454372327659 3.57535147616377 0.00442749160042381 1 3.52017334982945 12.2651951535613 0.404454372327659 0.130189436963643
AT3G21510_at 2.35636804238221 2.58710326004425 2.70276104381022 2.28613517927061 2.51487656463368 2.25910904636375 4.40210024576144 4.64787287663898 3.02854936528399 3.30793005766542 3.59105332384657 3.62390321345018 2.82027135537673 3.42853870145085 2.99446977900628 3.30042774596815 3.60251561398051 3.7144910813941 2.83565139456209 0.227873621588058 0.228478684996526 0.237934100565459 0.232773633218837 0.228553179144906 0.235846069946267 0.241919294634745 0.239223875810040 0.237321435822454 0.230148212535388 0.230651977871486 0.227026847893478 0.230860363517192 0.233265602964907 0.227026847893478 0.227026847893478 0.241180720806070 0.233355571800628 0.232635216841133 3 3|0 -|/ 7578459 7579485 7579012.625 7578181 7579605 - gene protein_coding_gene FALSE TRUE AT3G21510.1 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3); histidine phosphotransfer kinase Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (APH2), AT5G39340 (APH3), AT3G16360 (APH4), AT1G03430 (APH5) and AT1G80100 (APH6). Identical to Histidine-containing phosphotransfer protein 1 (AHP1) [Arabidopsis Thaliana] (GB:Q9ZNV9); similar to AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT1G03430.1); similar to putative His-Asp phosphotransfer protein [Pisum sativum] (GB:CAH55772.1); contains InterPro domain Hpt; (InterPro:IPR008207) -0.36527936752424 -3.57356687151214 0.00444128761994709 1 3.51743474063282 6.19045867785298 -0.36527936752424 0.102765487014359
AT4G09560_at 5.69427141270746 6.11605701011064 4.42688518200374 4.68147781566588 4.75038304460909 5.0695368278351 4.88582301394205 5.38003251799731 4.27836314411320 4.08453238329414 3.65254192495016 3.9685290617741 4.39553819594636 3.53405618758863 3.23279559297476 4.22324839734162 4.10892542564107 4.07128744802320 3.42042985452943 0.23123020447823 0.242921217727644 0.236543184554489 0.236041029979889 0.231710892531143 0.239083602986507 0.235633807589643 0.240385678895710 0.235929945775037 0.240071939043359 0.231380435282047 0.232588334943952 0.237200123955073 0.241753647795738 0.236942550604044 0.227649165112929 0.249960749200606 0.233663064747054 0.231612692444484 4 4 - 6041669 6042197 6041867.545 6041339 6043837 - gene protein_coding_gene FALSE TRUE AT4G09560.1 peptidase/ protein binding / zinc ion binding similar to protease-associated zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G71980.1); similar to ReMembR-H2 protein JR702, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94173.1); similar to Os03g0167500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049082.1); similar to Os08g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060777.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.408192559596592 -3.57342374706647 0.00444239596976739 1 3.51721509145116 9.03862855640503 -0.408192559596592 0.132793118303285
AT2G27820_at 6.29357217566706 7.12359952248245 5.14847876742774 5.43177161163387 5.74019241469765 5.78915372765044 6.8387475298193 7.21555767936172 6.36878868767863 5.89440176170832 6.90073929349568 6.87998804506584 6.12094226992742 6.56458748680815 6.95955223846547 6.5276229718022 5.42501388224166 6.44125059838464 5.91150663859105 0.216069264737180 0.209120266549183 0.212063815504238 0.217401145268151 0.206819665776875 0.219277763828776 0.214077383553058 0.202690186110416 0.209200787990058 0.203955797977197 0.205668731568044 0.207829196836604 0.207884303658055 0.212305396833088 0.201777102117751 0.200330209255300 0.218829066211814 0.210922882764694 0.209724855266788 2 2 + 11864586 11865131 11864817.273 11863845 11865365 + gene protein_coding_gene FALSE TRUE AT2G27820.1 PD1 (PREPHENATE DEHYDRATASE 1); prephenate dehydratase similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G08250.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) -0.46062018043283 -3.5725408542717 0.00444923935536713 1 3.51586009397314 12.4654814090591 -0.46062018043283 0.165408335536528
AT2G45710_at 6.74178949362088 6.83472743818744 6.91905587056876 7.35370844955801 6.78959620822498 6.86000208949403 7.21725456076098 7.28342112514739 5.60321834274712 5.83985605684569 6.11014842967139 6.90059450784792 6.02484706097051 5.87518253874508 7.11663752225009 6.25749921126438 6.79610490863616 6.34897245453813 5.71134905472985 0.215162329934956 0.207569276633206 0.203317709030332 0.211815506665312 0.211972593386422 0.204642504144278 0.210561636345660 0.214949058761998 0.221760471830750 0.208768990933460 0.206080376225048 0.214833888459831 0.210960286915292 0.203317709030332 0.207315881149471 0.210918387895876 0.210685606177145 0.215073758732708 0.209653804324804 2 2|0 +|/ 18838623 18839029 18838865.5 18838235 18839285 + gene protein_coding_gene FALSE TRUE AT2G45710.1 40S ribosomal protein S27 (RPS27A) Identical to 40S ribosomal protein S27-1 (RPS27A) [Arabidopsis Thaliana] (GB:O64650); similar to ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G61110.1); similar to ribosomal protein S27-like protein [Solanum tuberosum] (GB:ABA40465.1); contains InterPro domain Ribosomal protein S27E; (InterPro:IPR000592) 0.335949838915923 3.57235175800899 0.00445070646923625 1 3.51556987295932 13.0733891447860 0.335949838915923 0.0787152085134573
AT1G29240_at 6.04289944157839 6.79768263237407 7.22557562812702 7.13140492502102 5.68647839042232 5.75321248495355 4.38788266058971 4.12068171050157 4.16950559087094 4.61650896450869 4.17009325915827 4.55103758157915 4.43776066454185 3.82548101746268 3.79100581136114 4.33803235005656 4.59412448914598 4.00478483227828 4.67663273358807 0.237820071017728 0.242697360511770 0.258673500640803 0.250888086249474 0.241393215163671 0.254852707238636 0.233808620256101 0.239369717354742 0.246486122448771 0.242151003836336 0.237623326103238 0.229971552702657 0.231331786342205 0.235561126735401 0.232215782695608 0.229187914280646 0.239785471789044 0.242404996310772 0.229187914280646 1 1 - 10217023 10217576 10217294.444 10216765 10219832 - gene protein_coding_gene FALSE TRUE AT1G29240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34170.1); similar to Protein of unknown function DUF688 [Medicago truncatula] (GB:ABE80249.1); contains InterPro domain Protein of unknown function DUF688; (InterPro:IPR007789) 0.419186075122731 3.57215124894665 0.00445226267407127 1 3.51526213185517 10.2440217827062 0.419186075122731 0.139994225100566
AT3G47650_at 10.9468907687311 11.0336607440358 10.4672293757443 10.3709446185066 10.9212831396575 10.3687612473269 11.3860775073637 11.5247239604632 11.0268349270174 11.3845368090689 11.1319885618773 11.3696773124302 11.0174781806176 11.0955939858438 11.7040703945377 11.1819519837647 10.7355554841770 10.9295433264376 11.1311245352394 0.103263124357180 0.100229459592467 0.105785864467469 0.104717320563633 0.0983632653557648 0.125523326252085 0.101164864613790 0.10103152449835 0.107196627022059 0.100628417989777 0.0979545301461453 0.0978405817488058 0.099349226204421 0.0971767402467677 0.105518157243433 0.096967194937195 0.102688903113537 0.104506482485552 0.100432096298034 3 3|0 +|/ 17580562 17581223 17580887.111 17580490 17581552 + gene protein_coding_gene FALSE TRUE AT3G47650.1 bundle-sheath defective protein 2 family / bsd2 family similar to putative chaperon P13.9 [Castanea sativa] (GB:AAK25754.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) -0.362941668285392 -3.57209053314338 0.00445273401627603 1 3.5151689444979 22.0407286673050 -0.362941668285392 0.101100522774842
AT2G29690_at 5.63608470675423 5.64382686419923 4.78724501278488 4.65080577072308 5.29729352726865 5.24675505946115 5.96914548507019 5.57585578592435 5.22066921324904 6.13232319774949 5.72141851897934 6.15545892031735 5.6935686707084 5.71991413499172 5.67282291238688 5.75609906443354 5.18902361056023 5.74418918923207 5.61072631344128 0.210691077453284 0.213336403463360 0.214350416518994 0.222902483807975 0.215777489446103 0.225835318361580 0.206000723658339 0.206676686508706 0.225044573202774 0.206000723658339 0.207946876086520 0.206000723658339 0.206335186144771 0.208669184392546 0.212698173055489 0.210552238625007 0.221838032644165 0.220506269941443 0.224183762614185 2 0|2 /|+ 12703392 12703842 12703635.7 12700948 12704052 + gene protein_coding_gene FALSE TRUE AT2G29690.1 ASA2 (anthranilate synthase 2); anthranilate synthase anthranilate synthase - alpha subunit Identical to Anthranilate synthase component I-2, chloroplast precursor (EC 4.1.3.27) (ASA2) [Arabidopsis Thaliana] (GB:P32069); similar to ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1), anthranilate synthase [Arabidopsis thaliana] (TAIR:AT5G05730.1); similar to anthranilate synthase, alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT3G55870.1); similar to anthranilate synthase alpha subunit [Catharanthus roseus] (GB:CAC29060.1); similar to anthranilate synthase alpha subunit (GB:AAA74900.1); similar to anthranilate synthase alpha 1 [Camptotheca acuminata] (GB:AAU84988.1); contains InterPro domain Anthranilate synthase component I; (InterPro:IPR005256); contains InterPro domain Anthranilate synthase component I, N-terminal; (InterPro:IPR006805); contains InterPro domain Anthranilate synthase component I and chorismate binding protein; (InterPro:IPR005801) -0.329357199186487 -3.5718191043863 0.00445484177028600 1 3.51475234775129 11.0314439194471 -0.329357199186487 0.0725812245710017
AT1G68560_at 9.40192613237517 9.71735225858054 8.2040394409277 8.3099799092925 9.19824272639066 8.96154068281968 9.65338239565616 9.61773167290989 10.0344542857944 9.82618729251828 10.6192021595967 10.5131193100366 10.2181701592256 10.2570070631744 10.6945055147543 9.94333484036359 9.58208502145283 10.1632490601671 10.0638257225350 0.140099096352623 0.136053601589583 0.152656393389396 0.149506488813252 0.133395478250229 0.142717283111654 0.130911494852994 0.130038819747476 0.142675045045401 0.135633926060630 0.139116925893274 0.135677532101025 0.138485048728273 0.142545231667141 0.131832151915589 0.127309849128878 0.137288944915707 0.132190452351353 0.137857904642279 1 1 - 25738380 25738662 25738514.364 25737845 25741659 - gene protein_coding_gene FALSE TRUE AT1G68560.1 ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. Identical to Alpha-xylosidase precursor (EC 3.2.1.-) (XYL1) [Arabidopsis Thaliana] (GB:Q9S7Y7;GB:P80846;GB:Q9ZP26); similar to alpha-xylosidase, putative [Arabidopsis thaliana] (TAIR:AT3G45940.1); similar to alpha-glucosidase 1 (AGLU1) [Arabidopsis thaliana] (TAIR:AT5G11720.1); similar to alpha-glucosidase [Solanum tuberosum] (GB:CAB96077.1); similar to putative alpha-glucosidase [Oryza sativa (japonica cultivar-group)] (GB:BAA99366.1); similar to alpha-D-xylosidase [Tropaeolum majus] (GB:CAA10382.2); contains InterPro domain Glycoside hydrolase, family 31; (InterPro:IPR000322) -0.327567858771156 -3.57070129124267 0.00446353287363198 1 3.51303661694682 19.2448526897252 -0.327567858771156 0.0709346518705568
AT4G11960_at 8.17578358263631 8.27476292373123 9.17040134931766 9.04543502819798 8.99744571215883 8.82208640936721 8.97344230388715 8.88544690214236 8.43193356961028 8.44599971592084 8.57957794363059 8.22253378663571 8.7337875722227 8.4219866002295 8.3695073143493 8.8837521221016 9.06902186255688 8.71773345835084 8.46411215890098 0.137940973714605 0.137309143808062 0.137813049923235 0.131802448580034 0.131926745154345 0.141214183336887 0.132981452975586 0.133100827235546 0.141657202427267 0.137162644685220 0.133130120052701 0.128796180039661 0.128019699654435 0.132423295648854 0.141876248631800 0.13205195837788 0.145872255800014 0.134149648880593 0.136981730736747 4 0|4 /|- 7175357 7175908 7175724.5 7174880 7177834 - gene protein_coding_gene FALSE TRUE AT4G11960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22890.2); similar to Os03g0857400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051955.1); similar to Os08g0526300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062297.1); similar to hypothetical protein OSJNBa0003M24.13 [Oryza sativa (japonica cultivar-group)] (GB:AAQ56398.1); contains domain no description (G3D.2.20.25.10); contains domain Zinc beta-ribbon (SSF57783) 0.304436148846715 3.57058298046731 0.00446445377223401 1 3.5128550143931 17.3291435584233 0.304436148846715 0.0437481256321089
AT3G53320_at 3.54102410550129 3.85502052365210 3.30990358273226 2.95347735396517 3.66463104997459 3.10140875350321 3.96263318517002 4.06863661419645 3.72257105843024 4.21145577377454 3.54782593931068 3.94992320033474 3.94210412684153 3.79262048129214 3.88572208117101 3.67224520386999 3.65809157273285 3.49869598625127 3.90835564558181 0.198675116475918 0.210639233959498 0.199373699597563 0.203594223826686 0.206736692858740 0.211256504230370 0.202990000938176 0.201545171426552 0.210568725612921 0.2014774489514 0.201549960210713 0.200566769517668 0.202213379387278 0.201591418412141 0.199737690274479 0.203779571872139 0.198675116475918 0.208113757444112 0.202895752493042 3 3 - 19780418 19781096 19780743.273 19780154 19783347 - gene protein_coding_gene FALSE TRUE AT3G53320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37070.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78298.1) -0.40176533701975 -3.56985370698611 0.00447013455767506 1 3.51173557597217 7.40252409603908 -0.40176533701975 0.128817024704052
AT1G80270_at 3.11680673216525 3.77904077451846 3.50616201816662 3.43090154268783 2.56717255505566 2.48190444200409 3.89098929304777 3.98762072126119 3.21186763012831 3.19393640592854 2.82148385913576 3.57628084302399 2.47502338233665 2.77998198450577 3.73940141989323 3.02024004590879 3.13440610667208 2.72009589214013 2.9138359200593 0.235446021634545 0.230690015388116 0.231296339453037 0.240714365003663 0.225989748012181 0.232002428815897 0.225989748012181 0.249305611743623 0.240954102147918 0.226025181967060 0.225989748012181 0.225989748012181 0.228783203021733 0.236223132693538 0.233466412309228 0.225989748012181 0.232361592911963 0.234933522812711 0.227977932856633 1 1 + 30187632 30188193 30187951.818 30185846 30188399 + gene protein_coding_gene FALSE TRUE AT1G80270.1|AT1G80270.2|AT1G80270.3 DNA-binding protein, putative similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G15480.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93021.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.385130850553143 -3.56979450965493 0.00447059601064035 1 3.51164470541306 6.41503018173374 -0.385130850553143 0.117476759952270
AT3G16720_at 5.64320617395562 5.78069882670534 5.61270108771341 6.40601450275633 6.13285315416121 5.4099780093688 4.65558551988563 4.81671329606334 4.4858266142099 3.54891535463051 4.08350826292233 3.87389309751915 4.32304877798494 4.42144562125922 4.31927684055463 3.95333805393547 3.83041896341293 4.0656423439167 3.28143395402216 0.254715894485132 0.252515039305445 0.263049872858001 0.261012484869351 0.255123879607911 0.251769607249722 0.245833200085635 0.255938426479139 0.249215083090503 0.246758173513051 0.251394741353062 0.257524070908394 0.249869362061413 0.249300699131218 0.249104587391568 0.245833200085635 0.255408564577157 0.253909595259597 0.246185990243506 3 3 + 5693201 5693726 5693512 5692744 5694133 + gene protein_coding_gene FALSE TRUE AT3G16720.1 ATL2 (Arabidopsis T?xicos en Levadura 2); protein binding / zinc ion binding RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. Identical to RING-H2 finger protein ATL3F (RING-H2 finger protein ATL2) (ATL3F) [Arabidopsis Thaliana] (GB:Q8L9T5;GB:O24008;GB:Q9LUR1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G15975.1); similar to RING-H2 subgroup RHE protein [Populus alba x Populus tremula] (GB:AAW33880.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.501549294290718 3.5696432925189 0.00447177499583687 1 3.51141257871612 9.4976588893974 0.501549294290718 0.189315873274608
AT2G03090_at 3.33928207423146 3.28087109233874 3.3296147724409 3.29494018268619 3.42136110166596 3.38060057446942 3.63798528362986 3.55963002801178 3.66898963980718 3.57611916162834 3.92126750086225 5.39224108725021 3.92301787871095 4.2282878318631 4.85837749569199 4.28990274124483 4.09644152849773 4.68626031101882 3.98165541839652 0.217213874272579 0.211868543890159 0.228694759886068 0.225775216452328 0.213491803621600 0.234389978512633 0.221677321826307 0.212012400086698 0.216960759359543 0.210995088819544 0.226855137504177 0.239399820026409 0.210515848889465 0.224143501655835 0.220685736433835 0.215200118186087 0.225700604333976 0.218134001312866 0.210837176613416 2 2 - 917394 918115 917781 916853 918642 - gene protein_coding_gene FALSE TRUE AT2G03090.1 ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A15 precursor (AtEXPA15) (Alpha-expansin-15) (At-EXP15) (AtEx15) (Ath-ExpAlpha-1.3) (EXPA15) [Arabidopsis Thaliana] (GB:O80622;GB:Q8VYD1); similar to ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) [Arabidopsis thaliana] (TAIR:AT1G69530.2); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin 3 [Cicer arietinum] (GB:CAD33923.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.292203422605562 3.56909398291316 0.00447606045786799 1 3.51056933852806 7.48890028210254 0.292203422605562 0.0192823099632598
AT1G15360_at 1.54641016191130 1.54110988219960 2.06426437651080 1.80900435602698 1.88476224219477 1.81972466191745 1.53224817143816 1.75160768419194 1.91936230102253 1.73699517204519 1.96727500835831 2.17002072920526 2.01607923208368 1.94310266423615 2.24236451726295 2.24656300161074 2.66056928960968 1.89343028492974 1.77729216379249 0.221997564216409 0.219751197199968 0.223692918794734 0.230548582583775 0.217168900771672 0.219642790888467 0.224148922944463 0.225305966562418 0.217325012899437 0.223835165343503 0.220053667077797 0.217168900771672 0.220622749188659 0.218465722994044 0.223926176588234 0.217168900771672 0.220376666753163 0.228832282254996 0.232899740763482 1 1 + 5283636 5284394 5284147.273 5283533 5284668 + gene protein_coding_gene FALSE TRUE AT1G15360.1 SHN1/WIN1 (SHINE1); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. similar to SHN3 (SHINE3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11190.1); similar to Os06g0604000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058014.1); similar to Os02g0202000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046226.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABD28728.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.316401989759621 3.56883701562419 0.0044780666504203 1 3.51017485990534 3.72046251031494 0.316401989759621 0.059328796005615
AT1G63180_at 4.44470103254159 4.77542137920476 2.92414860426037 3.17264213026707 3.74806144566942 3.61299361007001 2.88947585560508 3.17521869588601 3.19746688297351 3.08647240197492 3.20731766360501 3.18342214544109 2.65560379016925 2.78079033688939 2.84163451455684 3.05637597783332 2.40255968159511 2.78947100426379 3.03134789072192 0.258866915867842 0.241720357850306 0.236126301966179 0.239182790955807 0.239415066173486 0.244561823627037 0.238085970515207 0.244275854987622 0.237197802317687 0.240277671987856 0.235255800860663 0.243383252283268 0.240336750160499 0.249304332446911 0.235255800860663 0.235255800860663 0.238484093539518 0.238082658548837 0.237651498981985 1 1|0 -|/ 23431224 23432110 23431783.111 23431076 23433268 - gene protein_coding_gene FALSE TRUE AT1G63180.1 UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3); UDP-glucose 4-epimerase/ protein dimerization Encodes a protein with UDP-D-glucose 4-epimerase activity. similar to UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT1G12780.1); similar to UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) (GB:Q43070); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) -0.348595814585933 -3.56718798413491 0.00449096300428289 1 3.50764322075806 6.57770415144687 -0.348595814585933 0.0900910797560714
AT3G04870_at 9.18226137910768 9.28472384153961 9.26762473054608 9.28906210466721 9.54624185095894 9.3115373403384 10.2102070458191 10.1088706593774 9.39392592680947 9.66261746439115 9.15910464208685 9.16340601868619 9.27922983632254 9.2159967773432 9.04108520386773 9.5530464276131 9.22755469676076 9.20795271953826 9.44925857767575 0.124242760603664 0.132191574056787 0.132418993530786 0.125451598035692 0.128870018541163 0.138563875129128 0.13451994196151 0.134304660019368 0.128925982202989 0.131222150170113 0.123777490049698 0.125860278467234 0.131601334981059 0.125737762379698 0.124867388074769 0.125555262344012 0.135970132755641 0.12672907696413 0.125503844970582 3 3 + 1345435 1346147 1345746.727 1342614 1346393 + gene protein_coding_gene FALSE TRUE AT3G04870.1|AT3G04870.2 ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene. Identical to Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) (ZDS1) [Arabidopsis Thaliana] (GB:Q38893;GB:Q9CAV3;GB:Q9LLY1); similar to PDS3 (PHYTOENE DESATURASE) [Arabidopsis thaliana] (TAIR:AT4G14210.1); similar to zeta-carotene desaturase [Citrus unshiu] (GB:ABC33728.1); similar to zeta-carotene desaturase precursor (GB:AAA91161.1); similar to zeta-carotene desaturase [Citrus unshiu] (GB:BAB68552.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.306955587090717 -3.56678306182337 0.00449413556769942 1 3.50702153077628 18.8914941339957 -0.306955587090717 0.0478061395280333
AT2G21440_at 6.28417965213861 5.7889180025045 5.95336811904598 6.14572507661295 5.91787182214969 5.6512875597615 6.50203742677733 6.50112795623582 5.73943552294434 5.9697654397081 5.29161776335989 5.48136184358642 5.60074162458104 5.14995343011739 5.82073550474103 5.37716771074105 5.70199072793118 5.82972576098724 6.0175394412603 0.198847364634583 0.19675168602006 0.195491036756944 0.203794795124976 0.195369739882269 0.195447244959752 0.203782609115425 0.196468700376694 0.201077878112521 0.195077296759130 0.200218055646004 0.19693952204518 0.201637677799713 0.203738830891054 0.194608188574038 0.197379021923737 0.202674445942544 0.2021679458137 0.20046824583876 2 2 - 9180796 9181286 9181043.273 9180640 9186246 - gene protein_coding_gene FALSE TRUE AT2G21440.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G19610.1); similar to Os03g0801800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051595.1); similar to putative RNA binding ribonucleoprotein [Oryza sativa (japonica cultivar-group)] (GB:AAO72376.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.364627143618393 -3.56584081710912 0.00450152698256696 1 3.50557480882786 11.8133520837666 -0.364627143618393 0.102869796766742
AT4G34580_at 0.830518034949647 1.06847000181686 1.29118752004238 1.41471215911810 1.05309752638287 1.10588700335872 1.06951589696704 1.00560196135215 0.981212506346676 1.03486928279273 1.46853620520861 1.81990372916028 1.11100437917863 1.51559733337974 1.68007003620832 1.08601107805626 1.06385841981407 1.54945517478825 1.043462802386 0.170991295371756 0.172469144777395 0.171755736865683 0.184222420866128 0.174236037277572 0.172946014835672 0.177204415037128 0.170459745948081 0.185288485434201 0.175107187535364 0.171749978433020 0.178803351069304 0.175053118899993 0.177356731283579 0.174593903122673 0.172706153751972 0.177909864273659 0.171932309926098 0.171357506325819 4 4 + 16517913 16518192 16518051.5 16515332 16519539 + gene protein_coding_gene FALSE TRUE AT4G34580.1 transporter similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT2G16380.1); similar to SEC14 (secretion 14) [Arabidopsis thaliana] (TAIR:AT4G39180.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.307325462876616 3.56462820585581 0.00451105770081545 1 3.50371283474731 2.32070013382317 0.307325462876616 0.0485637130629056
AT2G40435_at 3.74034984556631 4.03275456974345 4.84415679329496 4.51837290477155 3.36383318929510 3.23466293097645 5.15283087290008 4.87472858970825 3.41435218391592 4.80509293450685 3.70157267387579 4.20220216061744 3.49321120349635 3.33058234463716 4.05887169808554 3.84293760958801 3.87097249115174 3.21120897855343 3.64983166334805 0.199998425192252 0.203729202286434 0.198787468897133 0.2088983051941 0.198787468897133 0.203129523603939 0.200564387846431 0.209194541131731 0.213358441259121 0.205449685288373 0.202831621610921 0.217190775597033 0.201700773914902 0.201451043875934 0.201360547669397 0.198787468897133 0.210775680691327 0.199542768802518 0.202672944543963 2 2|0 +|/ 16894180 16895033 16894808.9 16893902 16895716 + gene protein_coding_gene FALSE TRUE AT2G40435.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56220.1); similar to Os03g0338400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050055.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10078.1); similar to Os05g0337200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055237.1); contains domain Regulatory domain in the aminoacid metabolism (SSF55021) -0.351195106908968 -3.56383000153147 0.00451734265413103 1 3.50248710506395 8.05539645649417 -0.351195106908968 0.0924930635542712
AT1G51850_at 2.37170695582532 2.43180111052924 2.19766106265162 1.90756515107734 1.37506187617832 1.41335074683040 1.25170972234029 1.64345610249007 2.28141989580294 2.18024944339297 1.76448953378336 1.63904171341039 1.98693221222659 1.64389180050665 1.95449547002065 1.87692456284291 1.74589145588683 1.68444889266194 2.35049348056065 0.170418219093323 0.176905161646217 0.173963565402449 0.178193256672952 0.179089501992544 0.177341151855263 0.173845418856346 0.175965125836779 0.176513552516144 0.181825608684363 0.178113746005283 0.173804754459582 0.175236843891269 0.179518300600471 0.170418219093323 0.170418219093323 0.172735771964997 0.176654746304855 0.175023057921763 1 1 - 19256638 19257205 19256854.818 19256516 19260452 - gene protein_coding_gene FALSE TRUE AT1G51850.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51805.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.342482624181625 -3.56327885696461 0.00452168755222492 1 3.50164072520014 3.85290678853346 -0.342482624181625 0.0852543591132055
AT3G16130_at 1.08939278353931 1.51837874435867 0.84199217310832 1.28074310887326 1.17251097511730 1.25562292705679 1.97853724456541 1.63680774533667 1.81120587276155 1.85790306282920 1.51644762572142 1.12514317452597 1.30728250094815 1.49348952030648 1.74679687432307 1.4697442813672 1.45501722518510 1.78426562740945 1.88757926075768 0.204983752429832 0.204983752429832 0.204983752429832 0.209651200685372 0.204983752429832 0.216204095179303 0.232753003198073 0.205052860010834 0.214197072179544 0.212270951046232 0.205852279721571 0.207866325957429 0.219331351751602 0.213016971507161 0.208404629554732 0.205672230343899 0.214010827814808 0.209208361962516 0.210785585705308 3 3 + 5467824 5468480 5468125 5466252 5468780 + gene protein_coding_gene FALSE TRUE AT3G16130.1 ATROPGEF13/ROPGEF13 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF12/MEE64/ROPGEF12 (KINASE PARTNER PROTEIN-LIKE, maternal effect embryo arrest 64), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G79860.1); similar to pollen-specific kinase partner protein [Lycopersicon esculentum] (GB:AAW57535.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.391508939235278 -3.56314149341399 0.00452277111481929 1 3.50142977445059 3.01649958899755 -0.391508939235278 0.122394797856435
AT2G46370_at 8.04387008511874 8.22380049491215 8.44793322747665 8.44222924331065 8.45118607360949 8.17750053413912 8.38216351215315 8.53634277819694 7.3420366025122 7.83828123642792 8.39508172249887 8.41630219247078 8.05880734295061 8.15594965844498 8.01368997584148 8.270801912515 8.04036743650198 7.94338520460005 7.641778896893 0.1597871146697 0.165332940076696 0.168341359374067 0.175289680266583 0.166131653029195 0.167008203719125 0.167239532538103 0.161994270484264 0.183371552573458 0.167809343908401 0.160975259466445 0.159341079252189 0.171223744136994 0.162305718128019 0.162605682482946 0.163801756477654 0.171883119894175 0.167004096639979 0.174997957091204 2 0|2 /|+ 19042955 19043415 19043165.2 19040860 19043732 + gene protein_coding_gene FALSE TRUE AT2G46370.1|AT2G46370.2|AT2G46370.3 JAR1 (JASMONATE RESISTANT 1) An auxin-induced gene encoding a cytoplasmic localized phytochrome A signaling component protein similar to the GH3 family of proteins Loss of function mutants are defective in a variety of responses to jasmonic acid. similar to DFL2 (DWARF IN LIGHT 2) [Arabidopsis thaliana] (TAIR:AT4G03400.1); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); similar to putative auxin-regulated protein [Nicotiana glutinosa] (GB:BAE46566.1); similar to putative Nt-gh3 deduced protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81367.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993)|similar to DFL2 (DWARF IN LIGHT 2) [Arabidopsis thaliana] (TAIR:AT4G03400.1); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); similar to putative auxin-regulated protein [Nicotiana glutinosa] (GB:BAE46566.1); similar to Os05g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056460.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.31880032707783 3.562248642629 0.00452982069266166 1 3.50005856732049 16.2227101232841 0.31880032707783 0.0626549921229303
AT4G39960_at 8.35697442340193 8.25350788019662 8.14918283630262 7.7080220500655 8.32062567224483 7.5548835013829 8.91410037411772 8.62282904489983 7.57556936812565 7.7319748017187 6.94654946534877 7.72744002619023 7.25273426684792 7.21640030475842 7.41170877903758 7.42783405366201 7.37962657449517 6.73733890721949 7.39039509652994 0.219461140250514 0.228970180246522 0.234158787781971 0.233659563454469 0.222166851649011 0.231238393651665 0.229559414925264 0.228131643844447 0.231877268351494 0.225477297841897 0.221384390158492 0.219272542636591 0.222576288014982 0.235010296790850 0.222603849347726 0.222760828615423 0.235208443108874 0.238368801138392 0.224443732533984 4 4 + 18535738 18536254 18535929.455 18533749 18536612 + gene protein_coding_gene FALSE TRUE AT4G39960.1 DNAJ heat shock family protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G22360.1); similar to Os05g0333500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055227.1); similar to DNAJ homologue [Oryza sativa] (GB:BAB70509.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.453600061959105 -3.56207081353477 0.0045312261072675 1 3.49978545444552 15.6492326241530 -0.453600061959105 0.162019116830154
AT1G11545_at 2.12067544435333 2.29586114355888 1.77174073926393 1.95290025665701 1.81565768914726 1.89115631985078 2.6885005207754 3.07725194480226 2.92480012113632 2.90521514044835 5.13598197837754 6.03680545386149 4.14969729188694 4.44495617181805 6.13325601815423 3.32994640544542 2.32268126326191 4.43376797527096 3.57580893301446 0.237216887484607 0.23893804707423 0.250214641803241 0.243580570978921 0.255147810420045 0.245404448660000 0.234830279066884 0.235850302803278 0.232303347089507 0.237439788245845 0.251450103454039 0.255379609497718 0.232303347089507 0.239704106925809 0.266228110963497 0.232303347089507 0.239747156502323 0.243912799869010 0.232303347089507 1 1|0 -|/ 3878721 3879616 3879085.6 3878550 3880361 - gene protein_coding_gene FALSE TRUE AT1G11545.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 8 precursor (EC 2.4.1.207) (At-XTH8) (XTH-8) (XTH8) [Arabidopsis Thaliana] (GB:Q8L9A9;GB:Q9LPY1); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT4G37800.1); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT5G65730.1); similar to putative endoxyloglucan transferase [Oryza sativa (japonica cultivar-group)] (GB:BAC45142.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.337701663041899 3.56130947889845 0.00453724814479230 1 3.49861614825116 6.01854865794741 0.337701663041899 0.0812318873720914
AT2G17510_at 8.21747882107533 8.08323272461535 8.18247834624119 7.95893204939357 8.52968245303981 8.53549971320915 8.22656947113697 7.8809833145878 7.17289304459965 7.44554192461048 6.00752361330251 6.00151107270918 6.80995423194772 6.45777792342789 6.26447014398897 6.72660242421346 7.25269223463646 6.60874689303045 7.51372973152648 0.242414206686970 0.244409212078681 0.251749489453967 0.245566133557291 0.259006629666032 0.246377948898447 0.24425971684273 0.242434119244885 0.245706847219474 0.242414206686970 0.253140522199372 0.247424571393504 0.242414206686970 0.242414206686970 0.251589320048582 0.242414206686970 0.264923099038966 0.242414206686970 0.242907189765887 2 0|2 /|- 7616505 7617652 7617374.375 7616318 7623082 - gene protein_coding_gene FALSE TRUE AT2G17510.1 ribonuclease II family protein similar to ribonuclease II family protein [Arabidopsis thaliana] (TAIR:AT1G77680.1); similar to hypothetical protein [Homo sapiens] (GB:CAH56266.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85401.1); similar to PREDICTED: KIAA1008 [Pan troglodytes] (GB:XP_509678.2); contains InterPro domain Nucleotide binding protein, PINc; (InterPro:IPR006596); contains InterPro domain Ribonuclease II and R; (InterPro:IPR001900) -0.330823179402359 -3.56118318338355 0.0045382479188521 1 3.49842216994668 15.1486311370304 -0.330823179402359 0.0749265929593472
AT4G38260_at 7.2558133062388 6.8289808862618 7.2199041366975 7.18052986698185 7.00591076525565 7.15611102682075 5.67372720413998 5.11491702475793 5.21876667586057 5.13863076509632 4.67372321845872 4.85623785756769 4.9116203019821 5.41370820688802 4.49362652591421 5.66159654190863 5.79484232109077 5.56836258581751 5.55718937823086 0.256765406386776 0.257468668231059 0.277296269971541 0.259101583047051 0.255090830640968 0.274266578731527 0.258404579101423 0.258344039438460 0.271079415908995 0.255090830640968 0.262791366251754 0.255090830640968 0.269493112056189 0.263104249380368 0.255090830640968 0.255090830640968 0.283976371953986 0.255090830640968 0.267451932836563 4 4|0 -|/ 17937189 17937881 17937505.667 17936915 17938722 - gene protein_coding_gene FALSE TRUE AT4G38260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20740.1); similar to H0409D10.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66750.1); similar to Os09g0323500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062871.1); contains InterPro domain Protein of unknown function DUF833; (InterPro:IPR008551) 0.394553382740092 3.56118275507649 0.00453825130978022 1 3.49842151210367 11.9177752611523 0.394553382740092 0.124619207536985
AT3G62020_at 2.00642593638288 2.11105645904264 2.31760328914589 2.14369033231719 1.89543501128586 2.31882026780276 2.33774442965342 2.80952827039337 3.1691420351595 2.50476901536188 3.6607700799278 4.07980291407053 3.50410823688460 3.49785086478424 4.90976566281834 3.29616219567346 4.12190165360414 3.90841620062891 3.21581685593645 0.220932465236977 0.218041843523963 0.223612954985849 0.218041843523963 0.218468459358458 0.220059084205793 0.222203873739277 0.225099353784912 0.233256380230264 0.218837402286948 0.223300641232298 0.218041843523963 0.222392161291522 0.220062732561986 0.223551012203985 0.218041843523963 0.224792601065624 0.221871780114273 0.224895036681267 3 3 - 22982493 22983061 22982726.455 22982333 22983243 - gene protein_coding_gene FALSE TRUE AT3G62020.1|AT3G62020.2 GLP10 (GERMIN-LIKE PROTEIN 10); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP10) Identical to Germin-like protein subfamily 2 member 4 precursor (GLP10) [Arabidopsis Thaliana] (GB:Q9M263;GB:O04352); similar to GL22 (GERMIN-LIKE PROTEIN SUBFAMILY 2 MEMBER 2 PRECURSOR.), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT1G02335.1); similar to germin-like protein 2 [Vitis vinifera] (GB:ABH09468.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.380901520916451 3.56069068667018 0.00454214876269340 1 3.49766572500204 5.66033293027047 0.380901520916451 0.115185830409404
AT4G19400_at 3.32680472457204 3.21529443163003 3.03262692212991 2.50087661619576 3.07245955674440 3.34240718323927 1.79197411686620 2.37152896883306 2.07386412534684 1.95347274995344 2.71273564581641 2.80702105689604 2.13517987591542 2.89901723096297 3.00367636708911 2.74551429335352 2.51297348529791 3.08373335410591 2.56155636452463 0.212580581429567 0.213542977450115 0.213877585081091 0.221498667366481 0.212324457302212 0.217693981119159 0.218394892161814 0.214847588039508 0.225755372616231 0.212326854282366 0.218974154011844 0.214193168412381 0.214118226983001 0.225233374386261 0.216066142775822 0.212324457302212 0.227682324105454 0.223360983269109 0.213771430554669 4 4|0 -|/ 10581056 10581894 10581321.7 10580838 10582000 - gene protein_coding_gene FALSE TRUE AT4G19400.1 similar to Os05g0241400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055002.1); contains domain Profilin (actin-binding protein) (SSF55770); contains domain no description (G3D.3.30.450.30) 0.425937838086684 3.55988631642899 0.00454852723867615 1 3.49643020914086 5.29863614517031 0.425937838086684 0.145195697043936
AT3G53540_at 7.49033810801898 7.92115299471284 5.62730517435163 6.23669490773396 7.386027661736 7.5079227250878 6.04613439564921 6.47275342298739 5.40351819441049 5.8356066547526 5.18858633235105 6.42536435293709 5.9135921779082 4.93401058589966 5.32514479364634 6.20978931353995 5.21575246046955 4.78704876204896 6.98521342275787 0.235624365583499 0.236146285403701 0.236687425237739 0.234084506806888 0.23087584510837 0.234480619157335 0.232621413668208 0.226889954828865 0.243747358121636 0.232669454131544 0.227646968497228 0.229893465869570 0.232547901355877 0.235484655371102 0.232952418124238 0.230282755292246 0.240024916810472 0.235330474067089 0.234408457620443 3 3 - 19857935 19858353 19858132.455 19857625 19861946 - gene protein_coding_gene FALSE TRUE AT3G53540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28760.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95302.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95303.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726) -0.433987719869157 -3.55955065138394 0.00455119171304575 1 3.4959146071796 12.6233864344466 -0.433987719869157 0.150250870240750
AT4G01450_at 5.05506749304034 6.21204692059739 6.30871393040175 6.89708391607645 8.3388143858673 7.24917885271328 8.28596111041827 7.98459356998759 5.13594403354347 6.22756366049087 7.34242648140538 7.38907101467502 7.37817344846748 7.10484901151936 5.88199610513577 6.99235471324352 7.63534505264344 6.97537853139635 6.61499783686933 0.271941210283099 0.268178205827144 0.283183913055046 0.272423212222849 0.270416318132554 0.280239946449857 0.268505646667875 0.266311453667471 0.292625720308391 0.274067001401824 0.266311453667471 0.266311453667471 0.266311453667471 0.292408093580697 0.276653872756446 0.267758352441127 0.294165036393015 0.275560094643339 0.266311453667471 4 4 + 609761 610463 610020.636 608456 610724 + gene protein_coding_gene FALSE TRUE AT4G01450.1|AT4G01450.2|AT4G01450.3 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G01440.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os06g0109200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056574.1); similar to H0523F07.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67024.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G01440.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os06g0109200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056574.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.704322307798351 3.55804020174165 0.0045632013995328 1 3.49359432525638 13.5815747582771 0.704322307798351 0.297880748964303
AT4G30410_at 5.92236374205337 6.66803177803875 5.29030150677721 4.94392475333976 6.65937894595582 6.84701454384548 5.31626569698621 5.84729921399893 7.26707376328373 6.27612795371453 8.36351845241424 7.87895052229447 8.35266041481284 8.19855272447592 8.77394976198393 8.0701682981574 6.92099260436854 7.67639715996391 7.71090518307178 0.192189198674971 0.181888520086751 0.197857944026842 0.198915927917592 0.186184320091014 0.18847237974606 0.194236268710354 0.184200470645453 0.192900950571496 0.198490163701487 0.181888520086751 0.181888520086751 0.185574213676205 0.186874212449163 0.186203885205908 0.186250593911023 0.185548965016217 0.188177386352782 0.182706951525673 4 4 - 14871327 14871833 14871632.364 14871115 14872182 - gene protein_coding_gene FALSE TRUE AT4G30410.1|AT4G30410.2 transcription factor| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19120.1); similar to Os02g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046079.1); similar to Os08g0260400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061389.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 0.470680635997909 3.55797342873291 0.00456373306842952 1 3.49349174643614 13.4938730437906 0.470680635997909 0.172465394879505
AT1G09780_at 9.97995035480261 10.0103181957449 9.56474872192923 9.52489052365626 9.38481945951468 9.22022784530444 10.0763433602911 10.0092249991102 9.73890515994982 9.69136322153486 9.765061094786 10.1103400803788 9.32568186650766 9.70186079366744 9.85903888891379 9.43210732699634 9.09463639385875 9.60921412800557 9.39891077729595 0.0968412143730867 0.0988669468946974 0.104257354393732 0.100260493014100 0.104382017900641 0.109342074431127 0.101122944072623 0.0994034175462187 0.106083699200892 0.0990929269684012 0.0973023235742368 0.0984616919894056 0.0995558714704967 0.106718125801055 0.0986159530222442 0.0979772335650213 0.105184943404477 0.102091542364439 0.0979626298482175 1 1|0 -|/ 3165559 3166386 3165849.8 3165372 3167871 - gene protein_coding_gene FALSE TRUE AT1G09780.1 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative Identical to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1) (BPG-independent PGAM 1) (PGAM-I 1) (PGM1) [Arabidopsis Thaliana] (GB:O04499;GB:Q8LD62); similar to 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative [Arabidopsis thaliana] (TAIR:AT3G08590.2); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:P35493); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:Q42908); similar to apgm [Malus x domestica] (GB:CAA06215.1); contains InterPro domain BPG-independent PGAM, N-terminal; (InterPro:IPR011258); contains InterPro domain Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; (InterPro:IPR005995); contains InterPro domain Metalloenzyme; (InterPro:IPR006124) -0.296385702253491 -3.55736373478513 0.00456859060411188 1 3.49255509463680 19.3322999114939 -0.296385702253491 0.0319594791259026
AT3G59780_at 10.8067265394366 10.8164088325175 10.2269374277710 10.3438900059561 10.8014570531349 10.3782843590586 11.5882262570303 11.3969012944234 11.6400807538402 11.8565541669319 12.0977282633492 12.0079664561980 11.5661094203133 11.7677492989890 11.9989752944533 12.0513148247280 11.3352143908154 11.7616992849194 11.8652693262295 0.113838326561484 0.116184717143883 0.124153032691565 0.117209958179829 0.118710265767401 0.128801659428354 0.121000406048156 0.113838326561484 0.136048793293009 0.113838326561484 0.115944310004236 0.119246379798707 0.113838326561484 0.118393072074883 0.119437942235863 0.117564283641588 0.117989763861363 0.124326153886385 0.113838326561484 3 3 + 22100516 22101274 22100914.6 22097904 22101421 + gene protein_coding_gene FALSE TRUE AT3G59780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23060.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82172.1); similar to Os01g0896500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045081.1); contains domain Rhodanese/Cell cycle control phosphatase (SSF52821) -0.339190140409159 -3.55721136390694 0.00456980539977156 1 3.49232100672129 22.60017700611 -0.339190140409159 0.0828951750946493
AT1G31930_at 6.54003712955898 6.65893088402685 6.29411418685776 6.65178463734582 7.26398824540657 7.18253841676696 7.02191633549364 6.55565647851088 6.84317274704882 6.29846711407736 7.49808316586794 7.09630206736777 6.7897774244214 7.1316005948722 7.03348544706874 6.9435970369048 7.45351112654558 6.55827537779364 6.3138007541974 0.179023992469854 0.175369205081459 0.179463764264850 0.181871585261289 0.18917765978256 0.192873909199082 0.176702834381882 0.190894152235787 0.193578861247624 0.178166251494628 0.186264344890158 0.181184248912133 0.177259059132033 0.184901419499194 0.180970242452242 0.182735687086779 0.181867628867307 0.180991937198001 0.187220159436240 1 0|1 /|+ 11468421 11468764 11468608 11464994 11469145 + gene protein_coding_gene FALSE TRUE AT1G31930.1|AT1G31930.2 XLG3 (extra-large GTP-binding protein 3); signal transducer similar to XLG1 (EXTRA-LARGE G-PROTEIN 1), signal transducer [Arabidopsis thaliana] (TAIR:AT2G23460.1); similar to G-protein alpha subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91995.1); similar to extra-large guanine nucleotide binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99166.1); similar to Os11g0206700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067461.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) 0.365951661513713 3.55502485760074 0.0045872742504524 1 3.48896161484848 13.5452337401858 0.365951661513713 0.104708254851355
AT2G03710_at 8.04501347972056 7.97762842057614 8.55154826683372 8.69652241364003 8.66356842217355 8.44706058047764 9.49531944873749 9.51704982384247 8.30101791062926 8.3320058801448 7.37133571728222 7.10047741938204 7.8148031654414 8.23420279292098 6.71048960770154 8.74980473370981 8.57623729751194 7.52481974350052 7.97117896815026 0.145025279956408 0.143870543234579 0.156333517129830 0.145840101426731 0.144127858400574 0.152826643189538 0.154288559929030 0.149657202344425 0.145790606943343 0.149550230214561 0.149299656148504 0.14284449167067 0.149526672297326 0.149190686558075 0.147179554272408 0.143615692372542 0.159802456899595 0.152324024817394 0.147647796082413 2 0|2 /|+ 1130894 1131593 1131325 1129265 1131835 + gene protein_coding_gene FALSE TRUE AT2G03710.1|AT2G03710.2|AT2G03710.3 SEP4 (SEPALLATA4); DNA binding / transcription factor|SEP4 (SEPALLATA4); DNA binding This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. Identical to Agamous-like MADS-box protein AGL3 (AGL3) [Arabidopsis Thaliana] (GB:P29383;GB:O04729;GB:Q41252;GB:Q7XJL0;GB:Q8VZR9); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to MADS-box protein AGL3-a [Brassica oleracea var. botrytis] (GB:CAD48302.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.305103741199032 -3.55427715733833 0.00459326367532823 1 3.48781272419448 16.6550499716616 -0.305103741199032 0.0467267153966499
AT1G71780_at 7.64392018538791 7.78661574414293 7.77829264172216 7.68185890438774 7.58612457087156 7.48021597446184 7.17800467919696 7.55375659597564 5.54384485804929 5.84459897380639 6.13856736763397 6.32512040337914 6.4985773120803 5.95347052999069 6.4968340828108 6.13514306842414 6.23217051781553 6.05916147235205 5.60058590624381 0.207237944937177 0.202658901312213 0.206183685134398 0.20338056582964 0.204916044336917 0.204735057684941 0.208359570912295 0.201102330090815 0.22627387483666 0.213708947492599 0.206878220616781 0.215565756595201 0.217497288877194 0.213647800068919 0.203325156906131 0.201529447452132 0.224386266225327 0.217545257633349 0.204925130167771 1 1|0 -|/ 26999129 27000217 26999699.1 26998748 27000312 - gene protein_coding_gene FALSE TRUE AT1G71780.1 similar to Os01g0184700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042235.1); similar to Os01g0715800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044066.1) 0.328959701647981 3.55336338089916 0.00460059437615336 1 3.48640857120878 13.5325439155237 0.328959701647981 0.0738413567696838
AT4G39140_at 6.2735736259478 6.84611085944333 7.18695651621591 7.13125430168302 7.20206993163453 7.48770850989899 6.11807328837121 6.60751697931599 5.72585623464283 6.07273778028143 5.89280170921802 5.81716479178521 6.48047594521871 5.74620740027435 5.6714484840407 6.33269779253248 6.15314920474423 5.58497349111861 5.9538105019976 0.211067886300689 0.202333093553289 0.205572274884434 0.199823816403623 0.199823816403623 0.218984172994743 0.205828324163724 0.201807586647561 0.220417275391078 0.208179410441248 0.201774847676468 0.203706032590716 0.212307830141011 0.210287841992065 0.207808882919317 0.205542449851985 0.209082842733537 0.21387885409714 0.210584067935116 4 4 - 18229642 18230152 18229952.636 18229325 18232062 - gene protein_coding_gene FALSE TRUE AT4G39140.1|AT4G39140.2|AT4G39140.3|AT4G39140.4|AT4G39140.5 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21500.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE79651.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.416537653323891 3.55294908351901 0.00460392201060061 1 3.48577191456843 12.7953245139008 0.416537653323891 0.139740558166001
AT4G19100_at 8.11080815309618 8.07705879722198 7.46060035530046 7.05587753474454 8.26523267393351 7.47373116367272 8.44421166372444 8.09104659695592 8.15724256139198 8.34608580546623 7.77741250823778 8.22807312308045 7.82954166129684 7.90223457431346 8.75073481391229 7.56151380823612 7.42244737264993 7.46571686267978 7.9976178463233 0.197684974309052 0.191327985776301 0.20004876387354 0.206987688429213 0.192234944178885 0.206028318000352 0.187575174795662 0.189456940231776 0.208590957037714 0.187575174795662 0.192559179337188 0.187575174795662 0.187575174795662 0.191155320465781 0.196385929840346 0.188858307782739 0.230378993907079 0.191794257998018 0.195646157856427 4 4 + 10453841 10454336 10454097.364 10453426 10454370 + gene protein_coding_gene FALSE TRUE AT4G19100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61615.1) -0.458346800673249 -3.55190323452617 0.00461233328690132 1 3.48416466797694 15.8894165731369 -0.458346800673249 0.165639602616967
AT1G19960_at 10.6130782702953 10.7439771368029 10.2912421498553 10.4567582454629 9.93415639547914 9.98474388954715 9.42661915252274 10.0138476685177 10.0262514113009 9.32374676562153 10.3904444716114 10.5551570070856 10.7153111308265 10.8941523807768 9.65008688875664 10.3744981083942 10.4156269997881 11.1055834876810 9.86889680711534 0.0918063200461644 0.0926860577630722 0.0871177840741508 0.0920202491631626 0.08910068832735 0.0901771551704175 0.0889064628588195 0.0900951788137489 0.103575609270284 0.0938201939385393 0.0861937882342534 0.0887374291684052 0.0877401422728225 0.09499805357364 0.0894154338854443 0.0883392355069606 0.096799301142929 0.0895008929554729 0.0882453618886752 1 1 + 6928084 6928321 6928143 6928030 6928454 + gene protein_coding_gene FALSE TRUE AT1G19960.1 similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1) 0.370160255535276 3.54860884041759 0.00463893206794545 1 3.47910118060747 20.3091724739159 0.370160255535276 0.108339201732323
AT1G26130_at 5.86928034544274 5.7956255350296 4.87485458351591 5.14614702223539 4.31775027344574 4.41934092913364 5.07755822115464 5.34020079545105 3.84378487342361 4.24423682176638 3.93277896731927 4.83192487193489 3.74474341382123 4.19389760998752 4.05949196810480 4.5986318353864 4.33303127376271 4.58967423110424 4.21566339357331 0.185982050265080 0.183185786547366 0.193251340761478 0.18302413347717 0.187904321216975 0.199426068232188 0.191004963952912 0.189645657925060 0.208671465180709 0.187440052003861 0.195097904549146 0.185451842501215 0.18881827174071 0.19606244600467 0.201653866909547 0.181540092116929 0.208012949233286 0.184111037181062 0.188323526231739 1 0|1 /|+ 9037668 9038191 9037932.1 9033587 9038233 + gene protein_coding_gene FALSE TRUE AT1G26130.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 12 (EC 3.6.3.1) (Aminophospholipid flippase 12) (ALA12) [Arabidopsis Thaliana] (GB:P57792); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.323424806840154 -3.54809756924648 0.00464307417317764 1 3.47831526023237 9.29846978035046 -0.323424806840154 0.0688588838134711
AT4G30350_at 6.49274189617978 6.70328898448863 6.19790126159556 6.44890403538529 6.48699817323305 6.18351630870565 5.67304745815451 5.56976137723855 6.07531359733188 5.99361599526869 6.82516493781448 7.52762526851277 6.0423685154961 6.65352033663302 6.60430004149265 6.72879836812545 5.78831539683957 5.83826423161415 6.08806096236865 0.189309189178861 0.193371904859504 0.203959288610922 0.197724282471255 0.198688569430931 0.198525437187221 0.192813852862273 0.191863848697335 0.204205166084152 0.191702887991492 0.194045288169617 0.200851969644912 0.194511562984406 0.200983905563935 0.206063118374592 0.19187991628748 0.202479014315629 0.202382558209322 0.195790699152972 4 4 + 14850382 14850954 14850685.364 14847746 14851149 + gene protein_coding_gene FALSE TRUE AT4G30350.1 heat shock protein-related similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT5G57710.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE86426.1); contains domain ATP-DEPENDENT CLP PROTEASE-RELATED (PTHR11638:SF2); contains domain ATP-DEPENDENT CLP PROTEASE (PTHR11638); contains domain no description (G3D.3.40.50.300); contains domain Double Clp-N motif (SSF81923); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) 0.334167233895402 3.54632584793943 0.0046574573834786 1 3.4755915907297 12.4962073479005 0.334167233895402 0.0793228149109926
AT1G80030_at 7.34556347824567 7.37402205694429 6.99668101149158 6.96231070741009 7.23030339749794 6.87598776706692 8.82459926901882 8.40814614701201 7.61626743283608 8.22002687126737 8.3966555391953 8.49245343147749 8.26741947055387 7.93491927059131 8.38712085261901 8.63976369735569 7.5502303699843 8.05189675357005 8.0078082930936 0.166998201703915 0.165406832869939 0.162997985637249 0.165591787790882 0.161799479498557 0.177631299401484 0.166932305805454 0.167571826288051 0.170400502384906 0.162368005637382 0.164168467130597 0.164127425461660 0.165995266449685 0.170402860311942 0.162771423031705 0.163019593443737 0.174723418634612 0.168500957567375 0.166689865044151 1 1|0 -|/ 30110572 30111487 30110996.625 30109723 30113925 - gene protein_coding_gene FALSE TRUE AT1G80030.1|AT1G80030.2|AT1G80030.3 DNAJ heat shock protein, putative similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT3G17830.1); similar to DnaJ homologue [Pisum sativum] (GB:CAA96305.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.352369396417936 -3.54512799716100 0.00466720775774287 1 3.47374995825928 15.5837475404529 -0.352369396417936 0.0949381067426727
AT4G39390_at 3.98680843802706 5.19235543368683 4.87124278666212 4.66044172126939 5.14595192865903 4.04954353122681 3.43342436007859 2.91510013983372 3.74045942742087 2.22142964496944 3.72346449574458 4.18320175718032 3.42635166038330 3.75597717429114 3.86843040946587 3.63250290048615 2.76452577814152 3.50785052410842 3.04801722255048 0.242057562888341 0.238346478680006 0.241009902922456 0.236561885724305 0.227299757111710 0.245313853074494 0.235262628907938 0.229012098689040 0.235599159553398 0.234073613398001 0.230280060221233 0.229041675137979 0.230188207763622 0.245437471968137 0.227799743245414 0.232756246892431 0.228600273087834 0.237508141419550 0.227542516664022 4 4|0 +|/ 18316919 18317783 18317373.889 18315569 18318037 + gene protein_coding_gene FALSE TRUE AT4G39390.1|AT4G39390.2 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G34020.1); similar to transporter-related [Arabidopsis thaliana] (TAIR:AT4G09810.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE94615.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.702179444104674 3.54440629924114 0.00467309243543695 1 3.47264031771884 7.58740363532482 0.702179444104674 0.298164297813619
AT1G31940_at 8.82994961136876 8.67368250008358 9.07167003253963 9.25108678758592 9.29349668466709 8.98500787154673 9.04374535997449 8.93207586383391 8.3751885537213 8.34818870401035 8.72535265959795 8.284745048022 8.80978619522792 8.88965291992764 8.49934252025726 8.77833687483276 8.85153933594712 8.60670556759044 8.21431895511578 0.113760467534603 0.112819132360646 0.117856042987282 0.118161874814325 0.120376205263754 0.122780967908217 0.123316274508689 0.121116597474565 0.127447612405827 0.129842658468338 0.121631265469968 0.120315112987903 0.120100218865646 0.112819132360646 0.117450863239969 0.115654838082005 0.125301402547369 0.116095192829604 0.119824824695968 1 1 - 11470286 11471079 11470551.273 11470039 11471320 - gene protein_coding_gene FALSE TRUE AT1G31940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35585.1); similar to Os02g0697700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047822.1) 0.324284623081281 3.54366238770596 0.00467916623127601 1 3.47149646935845 17.5067133611789 0.324284623081281 0.070134169629776
AT1G70940_at 6.41278522592925 6.6768873289598 5.97505617718715 5.36718934533206 7.11229789355043 6.01403761316557 7.97623742048098 8.06608349865826 9.07867862700307 7.76357263085462 8.8849620335914 9.09214184586243 8.70231732846878 8.51874960100106 8.77162876950363 8.8793125431607 8.06454998692438 8.00782280922794 8.85062605735622 0.226389461692478 0.208828123923183 0.225159897390968 0.244461414492032 0.206456054453262 0.228796703989279 0.210310522941929 0.203154335474343 0.225722733663911 0.207747382615068 0.212293408106379 0.203154335474343 0.203154335474343 0.208196281007849 0.218196731911390 0.205504636867598 0.203630044710277 0.210537132684941 0.205572060235963 1 1|0 +|/ 26748242 26749493 26748887.111 26746716 26750057 + gene protein_coding_gene FALSE TRUE AT1G70940.1 PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. Identical to Auxin efflux carrier component 3 (AtPIN3) (PIN3) [Arabidopsis Thaliana] (GB:Q9S7Z8); similar to PIN7 (PIN-FORMED 7), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G23080.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G01420.2); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.557479967442686 -3.54216732229434 0.00469139752875109 1 3.4691974727749 15.2898108394690 -0.557479967442686 0.222528378482211
AT2G02400_at 7.51343745576995 7.7460272843911 6.80903917610778 6.82829022469227 8.69830429898527 7.52744700559602 6.72590789181892 6.80229868759615 6.22972934120114 6.14507523923888 7.3345833502256 7.10012194099179 7.01536139399272 7.13389115903322 7.14917654000485 6.60143654690418 6.0993432995262 6.53346900365904 5.87079032424632 0.246877826230356 0.236790129925822 0.260171876954397 0.253479002222505 0.2434671809443 0.259402745741635 0.236034265149111 0.236288113663982 0.248701079977154 0.246488607728064 0.23720096381695 0.234864552501229 0.246161809082374 0.238494483354822 0.239383278765503 0.243197139841113 0.255887428676089 0.24081576081537 0.247118471522929 2 2 - 631464 632049 631700.364 631235 632574 - gene protein_coding_gene FALSE TRUE AT2G02400.1 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT5G58490.1); similar to Lipocalin [Medicago truncatula] (GB:ABE93736.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.528955141257365 3.54036216992967 0.00470620952464378 1 3.46642135705478 13.8077379393802 0.528955141257365 0.207030885023179
AT1G23820_at 9.4746185950955 9.51838293673335 9.46181498448748 9.46865678354506 9.6818292775003 9.5589962199298 9.38276732619167 9.31247463118083 8.35335876308024 8.97767772821816 8.94312021455509 9.09180807595399 8.89685505622896 9.02722866056996 9.21698094477404 9.14030422497942 9.13684773995966 8.9976471788988 8.44796629684813 0.127794392355675 0.131048322125918 0.131758844658987 0.133438314712902 0.128570609990269 0.136061708140253 0.125073571246996 0.127403220824269 0.142400408207975 0.139551577144980 0.131890343928630 0.129517600416048 0.125616911850673 0.141814397501338 0.125632316594336 0.130226868912225 0.133056847857644 0.133268735968412 0.136239361267709 1 0|1 /|+ 8421853 8422649 8422303.667 8420254 8422974 + gene protein_coding_gene FALSE TRUE AT1G23820.1|AT1G23820.2 SPDS1 (SPERMIDINE SYNTHASE 1) Spermidine synthase. Identical to Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) (SPDSYN1) [Arabidopsis Thaliana] (GB:Q9ZUB3); similar to SPDS2 (SPERMIDINE SYNTHASE 2) [Arabidopsis thaliana] (TAIR:AT1G70310.1); similar to spermidine synthase [Malus x domestica] (GB:BAC20171.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Spermine synthase; (InterPro:IPR001045) 0.292055763336566 3.53956328484339 0.00471278004356343 1 3.46519266257924 18.3071175650191 0.292055763336566 0.0256629918770585
AT3G60120_at 1.42238515109812 1.58929311872862 1.88659385552828 1.93171928111361 1.72744160164417 1.78779281280304 1.01576447810606 1.31250550080983 1.86526121840166 1.00836030914797 1.47381766486028 1.57221367367052 1.69138654586064 1.54816910199738 1.48352861553749 1.22175346748667 1.73378956318926 1.46044497296589 1.30437809477805 0.169469535237017 0.171390264792110 0.179298361633006 0.170534220230451 0.168961457462378 0.173348434686988 0.170075737658612 0.169115656931665 0.174249767709078 0.175971350390127 0.170864909786346 0.178887820481926 0.168822498370971 0.17127628111521 0.167654620181940 0.168209306318881 0.178963473035891 0.175894300742934 0.172739516814650 3 3|0 +|/ 22219020 22219891 22219530.2 22217322 22219927 + gene protein_coding_gene FALSE TRUE AT3G60120.1 glycosyl hydrolase family 1 protein similar to PEN2 (PENETRATION 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT2G44490.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.314435617753370 3.53662137254168 0.00473705759162241 1 3.46066743164333 3.04208922071492 0.314435617753370 0.0603442572861657
AT3G20240_at 5.33047739984301 5.54802893684201 4.93807545101126 4.74780219819821 4.79562398125838 4.93312680438236 5.94247864615006 5.83533521630718 4.0808029599993 4.60807968456198 4.24335586225884 4.54592193145021 4.65167518082283 4.27837308388705 4.73711355077539 4.58165877795153 5.41189812575699 4.38560272448223 4.56874064007917 0.21527718895757 0.199680504054842 0.205093091895834 0.214334219039016 0.201379957048527 0.206585473649472 0.218168580928090 0.20012760039945 0.205774532626143 0.201459806517623 0.200732467856348 0.198701409684300 0.219520261745325 0.199091838016122 0.207707061854503 0.200939541414772 0.201880646461826 0.201256666256271 0.202976440341967 3 3 + 7057944 7058680 7058267.909 7057017 7058897 + gene protein_coding_gene FALSE TRUE AT3G20240.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT4G32400.1); similar to Adenine nucleotide translocator 1 [Medicago truncatula] (GB:ABE88494.1); similar to Os08g0520000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062264.1); similar to Os09g0497000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063557.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.312590398973349 -3.53480453081881 0.0047521149340870 1 3.45787235715169 9.77069741235903 -0.312590398973349 0.0584093005376634
AT1G25580_at 4.86276616984603 4.61692375070256 4.67604703893007 4.55684569407581 4.18667144649377 3.89435962031392 3.22248384770566 2.64009096048897 3.29212936454724 2.4595636603808 2.99486154811676 3.49508475481087 2.91163466478741 3.42584791093228 2.85319265305711 2.96702519143833 2.6756883358156 3.38581824137264 2.66389938360406 0.229121735955458 0.226414425721437 0.230760154727285 0.231652089197664 0.227715645013096 0.23308171150384 0.226271689208847 0.233045556096348 0.239081082005945 0.233533166086195 0.225434354364461 0.229339817742701 0.230439546575732 0.226302156723459 0.225434354364461 0.225434354364461 0.230764147107496 0.225434354364461 0.226604885534804 1 1|0 -|/ 8997076 8998067 8997588.5 8996755 8999847 - gene protein_coding_gene FALSE TRUE AT1G25580.1 ANAC008 (Arabidopsis NAC domain containing protein 8); transcription factor similar to ANAC044 (Arabidopsis NAC domain containing protein 44), transcription factor [Arabidopsis thaliana] (TAIR:AT3G01600.1); similar to Os02g0594800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047308.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72224.1); similar to Os01g0191300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042270.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.388180730399132 3.53437099301786 0.0047557152113799 1 3.45720534452497 7.02894438209564 0.388180730399132 0.122279393688649
AT4G36350_at 2.42240160203146 2.46362510684086 2.40155371989372 2.53282319761518 1.79636176816700 2.01844534813540 2.30527468277526 2.73511273497837 2.89301304397355 3.03623836714063 2.71872651799745 2.64257846022092 2.50816952717804 2.47216275020564 2.61762701070599 2.82888857309695 2.64955717668568 2.85064277232206 3.22163599223197 0.200690747692864 0.203362336478977 0.205398002180053 0.213980348149988 0.208314021627720 0.201417994137074 0.204726603393615 0.198535979023655 0.208445763504951 0.204455262500568 0.198535979023655 0.201751770250084 0.198535979023655 0.198535979023655 0.206798365351539 0.202988218036439 0.214506813301145 0.203400302786018 0.207481926900703 4 0|4 /|- 17173810 17174346 17174069.5 17173740 17175860 - gene protein_coding_gene FALSE TRUE AT4G36350.1 ATPAP25/PAP25 (purple acid phosphatase 25); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP6/PAP6 (purple acid phosphatase 6), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G56360.1); similar to purple acid phosphatase [Medicago truncatula] (GB:AAX20028.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.341779612883726 -3.53430854058284 0.00475623407335854 1 3.45710925783323 5.19011971988814 -0.341779612883726 0.0870471703504065
AT1G27610_at 1.55787683939636 1.70856784667954 1.31147940437236 1.42847784347590 1.07739933915906 0.940400108997564 1.22153470239413 1.59017155595508 1.63698756227196 1.75680902875677 1.48220231363189 1.46885039947392 1.08384321637963 1.50521606717012 1.39830345884261 1.17344145211839 1.02397594993667 1.76889997461703 1.67940636877468 0.230420902868578 0.228136671273126 0.226502384299344 0.227677661960295 0.240223688850623 0.225334429383721 0.235957256338227 0.226223396096033 0.222291623431105 0.222291623431105 0.225012273940675 0.222291623431105 0.224945437279309 0.234021657032024 0.226629768857469 0.226438714690645 0.226278824764698 0.227326903585375 0.228186647818268 1 1|0 -|/ 9607124 9607530 9607306.889 9607098 9607564 - gene protein_coding_gene FALSE TRUE AT1G27610.1 unknown protein -0.329037305675787 -3.53385416040892 0.00476001086903464 1 3.45641015622699 2.88156808369829 -0.329037305675787 0.0756425742822512
AT4G29160_at 8.33789705490986 8.5253150178478 8.82151723545656 8.92218548692516 8.78889484132323 8.70450428691357 8.36695575632148 8.50792356832021 8.0301905684668 8.1732330742193 8.61666470093469 8.33194576950895 8.37715738696516 8.37881731984976 8.08914459110464 8.245496843309 8.27319107853754 8.0199463264346 7.97639941433989 0.178482406963455 0.16789449774971 0.185738137724938 0.170407462506077 0.174369794917513 0.176370666940062 0.180336851315198 0.178510168295185 0.181344674943787 0.166123560367731 0.169775526830022 0.163032786951042 0.176284271661735 0.178408436867415 0.172594837446789 0.168592075114146 0.188266905201497 0.183506943470445 0.177893201418454 4 0|4 /|+ 14381413 14382324 14382043.125 14380759 14382672 + gene protein_coding_gene FALSE TRUE AT4G29160.1|AT4G29160.2|AT4G29160.3 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT2G19830.1); similar to Os09g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062723.1); similar to SNF7 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95683.2); similar to Os06g0608500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058040.1); contains InterPro domain Snf7; (InterPro:IPR005024)|similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT2G19830.1); similar to Os09g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062723.1); similar to SNF7 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95683.2); similar to Os06g0608500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058040.1); contains InterPro domain Snf7; (InterPro:IPR005024); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.303178548188338 3.53357344501355 0.00476234570904839 1 3.45597824230962 16.7976424165468 0.303178548188338 0.0465170419279919
AT2G20470_at 2.58806332816798 2.5806561808981 2.07452426951380 2.50889192675294 1.78555393894481 2.31121433056764 2.51064404629119 2.28426187884420 2.52013036956947 2.79817696430018 2.22085976161350 2.08138292293165 1.76559805775882 2.22287793769171 2.58082022381144 2.33010067214844 2.43502480753117 2.62415393223559 2.91345356328633 0.265906740093751 0.265906740093751 0.279986223888336 0.265906740093751 0.276070434178395 0.281083546362999 0.272395685099049 0.270203229856622 0.273337446304197 0.266962266431695 0.265906740093751 0.266665936038491 0.276744482767006 0.266225024799692 0.270906986701647 0.268138804684080 0.266034117740765 0.281251922377176 0.276435526093414 2 2|0 -|/ 8833402 8834424 8833754.714 8833358 8836578 - gene protein_coding_gene FALSE TRUE AT2G20470.1 kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G23310.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G03920.1); similar to protein kinase MK6 [Mesembryanthemum crystallinum] (GB:CAB82852.1); similar to protein kinase [Nicotiana tabacum] (GB:CAA50374.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95893.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.391089125846137 -3.53350937890040 0.00476287874165968 1 3.45587966793037 4.84373753175622 -0.391089125846137 0.124346472820039
AT3G26710_at 8.81793038239031 8.96550972626038 8.65592799046178 8.33273685007431 9.31367045750058 8.37896393605028 10.1750995550862 10.1186688785214 9.6962792157837 9.65214886165678 9.5991756573342 9.82718126217586 9.33210455591166 9.56471592545342 9.92535195328556 9.62124728214594 8.74384642321057 9.43637421487807 9.4361223721537 0.157345430765274 0.146862452174360 0.163160930696399 0.156981875896012 0.148782947073148 0.169834015690403 0.147376378219323 0.144069451492709 0.152502065822484 0.144619886731315 0.145025641224801 0.146110488802247 0.145476960410177 0.148834390915825 0.145514905452236 0.144069451492709 0.161527870967112 0.148428346069170 0.145716123311653 3 3|0 +|/ 9815011 9815498 9815217 9814610 9815987 + gene protein_coding_gene FALSE TRUE AT3G26710.1 similar to Os11g0526200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067997.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53542.1) -0.468788908804069 -3.53269934449276 0.00476962355492492 1 3.45463328621338 18.6453633766252 -0.468788908804069 0.173322075723456
AT1G59980_at 3.32094635024586 3.20737817858270 3.01071299775903 2.93875873901635 2.98122053684648 3.02420372425535 3.02501998670661 3.06630525711204 3.00430110991853 4.06572885984763 3.13985306685818 3.49898732399815 3.10062470410997 2.73328863783590 3.33672465361347 3.1457323716792 3.09083514052303 2.74765063248072 3.47693120856378 0.225891057096593 0.221769836500733 0.214605356583009 0.214267134815972 0.216058313395695 0.215876323122003 0.221507481375233 0.22227049708159 0.22386450321532 0.224394153863089 0.217462698980136 0.214267134815972 0.214267134815972 0.229032630616600 0.217547229223774 0.214595977774230 0.225445212429414 0.229187363224896 0.231153696825085 1 1 + 22086030 22086980 22086609.5 22084454 22087316 + gene protein_coding_gene FALSE TRUE AT1G59980.1 DNAJ heat shock N-terminal domain-containing protein Identical to Chaperone protein dnaJ 39 (Protein ARG1-LIKE2) (AtARL2) (AtJ39) (AtDjC39) (ATJ39) [Arabidopsis Thaliana] (GB:Q6XL73;GB:Q8GWE4;GB:Q9ZUJ4); similar to ARL1 (ARG1-LIKE1), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G24120.1); similar to ARG1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37859.1); similar to Os02g0741100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048078.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.291315051707576 -3.53162569809405 0.00477857849478248 1 3.45298119295770 6.3792511175642 -0.291315051707576 0.025449730299078
AT1G69220_at 6.29236183246095 6.15293347024289 5.45732943100155 5.67123413102396 6.16895641143022 5.37633033821987 5.7378443615846 5.77703904234012 6.56902719572355 6.23913071600664 6.15805047757597 5.6265702354869 6.14015895411517 6.19836446484367 5.97308576820265 5.92099296253143 5.81857291124399 5.96721641282267 6.6793584055595 0.187388733050555 0.192700673379774 0.192377710120688 0.195008311118951 0.189744179216713 0.211939155163844 0.191201477132004 0.198842184950305 0.205015471905985 0.192326419409335 0.195509821946975 0.192813122765136 0.189277056774380 0.191236605231047 0.195156934738938 0.187388733050555 0.201538595990912 0.191205845352696 0.189836358673387 1 1|0 -|/ 26023969 26024779 26024364.444 26023752 26029834 - gene protein_coding_gene FALSE TRUE AT1G69220.1|AT1G69220.2 SIK1 (ERINE/THREONINE KINASE 1); kinase Encodes a putative serine/threonine kinase (SIK1). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53165.2); similar to 36I5.3 [Oryza sativa (japonica cultivar-group)] (GB:AAG45491.1); similar to putative serine/threonine kinase [Hordeum vulgare subsp. vulgare] (GB:AAG49001.1); similar to putative serine/threonine kinase [Triticum monococcum] (GB:AAL74185.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53165.2); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G15220.1); similar to putative serine/ threonine kinase [Sorghum bicolor] (GB:AAM47579.1); similar to 36I5.3 [Oryza sativa (japonica cultivar-group)] (GB:AAG45491.1); similar to putative serine/threonine kinase [Hordeum vulgare subsp. vulgare] (GB:AAG49001.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.421022173907666 -3.53098917873936 0.00478389566049565 1 3.45200168449719 12.0648612751794 -0.421022173907666 0.144268627334558
AT2G40250_at 2.09860484367255 2.11335013151395 2.08846157581492 2.51556731630497 1.7569661992858 2.01042535393024 2.24413912297118 2.68070855992024 3.19220732584770 3.02698784124401 2.28953510542021 2.36902147651326 2.12075991606004 2.69462634395263 2.80875877116304 2.24893143496104 2.53641625726193 2.75916747773122 2.90219356190597 0.204005169376988 0.211679383109856 0.208432448597636 0.205387813573246 0.208954207044185 0.205843825984942 0.205431119625451 0.206641143950039 0.218599457659862 0.208317171985221 0.210116243023491 0.202043429246805 0.205248212067407 0.203998421527706 0.218391007243319 0.202354008754521 0.220395593180230 0.205526693777437 0.207556356508929 2 2 + 16820903 16822276 16821931.727 16820408 16822329 + gene protein_coding_gene FALSE TRUE AT2G40250.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G31540.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE91411.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.376703182484236 -3.53089555393969 0.00478467826858067 1 3.45185760658216 4.94796039170114 -0.376703182484236 0.114461127230241
AT1G17730_at 8.3222793757149 8.77998620063656 8.66679307300268 8.6936750646876 9.09818241169285 8.78152363267775 8.69386656565203 8.8383243754459 8.22809210560181 8.3743806960193 9.15420303290712 9.10953722720488 8.9610593291079 9.08594772309267 8.73467676966109 8.94511254387747 8.5626231562457 8.59032362759663 8.39003341142898 0.158858326715675 0.163681028512801 0.163441308252004 0.17081021822825 0.168006032218750 0.168412343667754 0.166259137450878 0.170639506905031 0.192638331363249 0.167367395557669 0.161790195057494 0.158081859150251 0.158060279462524 0.168998318022812 0.167379105529625 0.157886871207132 0.173725151062273 0.17879499742578 0.164973170448882 1 1 + 6099360 6100105 6099632.818 6099082 6100308 + gene protein_coding_gene FALSE TRUE AT1G17730.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G73030.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.356764719007259 3.53006370906534 0.0047916374297541 1 3.450577454863 17.3462142527196 0.356764719007259 0.0996168275119018
AT1G75270_at 6.71591699789521 7.19424451817423 6.3313308361499 7.10006001520742 5.70670509892764 5.93168647479819 7.26966746589815 7.53507576745952 4.23281954262391 4.72930036754962 4.13864548500986 4.20599149370585 4.40033336587572 4.23463099535483 4.31883714736684 4.88992359399037 5.21835748921734 4.32409867186223 4.45821966376548 0.258803263436138 0.254779496758089 0.274350409169407 0.261916075742670 0.255148147349429 0.259299301826987 0.256236593311758 0.258084357540348 0.269078298239048 0.256413255270684 0.255187740914534 0.251842863960164 0.258166132700549 0.259403965068821 0.264578709577803 0.256054027867003 0.256826615087882 0.251842863960164 0.259312842288586 1 0|1 /|- 28253983 28254656 28254255 28253736 28255011 - gene protein_coding_gene FALSE TRUE AT1G75270.1 DHAR2; glutathione dehydrogenase (ascorbate) similar to DHAR1 (DEHYDROASCORBATE REDUCTASE), glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G19570.1); similar to dehydroascorbate reductase [Nicotiana tabacum] (GB:AAL71857.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.459187412717222 -3.52975995246527 0.00479418123177315 1 3.45010997785475 11.1929852992859 -0.459187412717222 0.167854099160362
AT3G48190_at 6.32058454693615 6.23129530293423 5.4660967836836 5.64267822928268 6.93867842316101 6.06397249632408 6.43503434200102 6.3229169881769 6.41836114530124 6.63411736068499 6.18493901531154 6.46954410443767 6.17722292163162 6.082585680891 6.23113774636048 5.74880272817022 6.1701908982815 6.40512814246643 7.24142749340532 0.224257825945026 0.219823857162879 0.222737074186829 0.221544542061277 0.221813925947812 0.242074256634504 0.219523959805014 0.228262400459443 0.236925935094705 0.221288745452197 0.223332820282367 0.223015644893444 0.220534204685135 0.222733326225647 0.238916186652955 0.223824347265211 0.226782589730568 0.232428827507291 0.218297659346912 3 3|0 +|/ 17838045 17839311 17838672.444 17808319 17839576 + gene protein_coding_gene FALSE TRUE AT3G48190.1 ATM (ATAXIA-TELANGIECTASIA MUTATED) encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. Identical to Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia telangiectasia mutated homolog) (AtATM) (ATM) [Arabidopsis Thaliana] (GB:Q9M3G7;GB:Q9M4D7); similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G40340.1); similar to Os01g0106700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041778.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93104.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain PWWP; (InterPro:IPR000313) -0.44027137016797 -3.52966466368873 0.00479497951136111 1 3.44996332797739 12.6518217579746 -0.44027137016797 0.156404880390352
AT1G67060_at 4.15456685137342 5.00808780700232 5.70098499122576 5.22679570278641 6.25667774137605 5.7075268162959 4.97340392184776 4.76398187293896 5.07517289221535 4.8854985446372 5.28555390082945 5.21049757400575 5.58328250717845 5.50513429630514 5.0741571223628 4.83209323062017 5.20353271527408 4.78640604329595 5.52991395137447 0.250499840375622 0.243679836282209 0.239549416168254 0.242675887861071 0.251417387351409 0.240715426273741 0.246869990000659 0.238675877167213 0.251178841568172 0.240770373063244 0.240545153278743 0.237125187542249 0.252023126767456 0.237125187542249 0.244398540520238 0.237125187542249 0.251525676769614 0.243150295817137 0.246262697315141 1 1|0 +|/ 25040394 25042302 25041406.444 25040279 25043052 + gene protein_coding_gene FALSE TRUE AT1G67060.1 similar to Os02g0221600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046323.1); similar to hypothetical protein [Plasmodium falciparum 3D7] (GB:NP_705382.1) 0.509769955311025 3.52915103633261 0.00479928476769996 1 3.44917283800052 10.3983085313440 0.509769955311025 0.197219903667591
AT4G19500_at 7.75834776162142 8.02313152271649 7.60855588145952 7.7130708721368 8.39471454879757 7.59630922942555 8.29324200771188 8.33225023792102 7.78445214255044 8.12406680887147 7.74011509580293 7.73890971154906 7.90175969372133 7.43988376654982 7.33080004436384 8.55482579185319 7.10238569641778 7.03064103086541 8.6343905299526 0.211275388089937 0.205890031688119 0.219395757109417 0.220640724396668 0.212170071471518 0.22611406617152 0.215615095640503 0.208150515714931 0.221979230794642 0.207278625053918 0.209499893471333 0.205890031688119 0.210412739999563 0.218154762581516 0.213801908394592 0.208399525453971 0.231301378225035 0.215678859854950 0.205890031688119 4 4 + 10629472 10630107 10629829.091 10625798 10630150 + gene protein_coding_gene FALSE TRUE AT4G19500.1 disease resistance protein (TIR-NBS-LRR class), putative similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.42481748638613 -3.52880129342778 0.00480221860911353 1 3.44863455724713 15.8578952232314 -0.42481748638613 0.146842416364249
AT3G07370_at 5.42551749532796 5.7221668731619 6.33633555045437 6.28174819088084 5.58202027497593 5.96273041798436 5.15144923691735 5.15497286236147 5.07875003813003 4.87180904205969 4.95440791394562 5.01084541968736 4.60343290326647 5.01215043935441 4.79042498967524 5.24113354513018 5.48351674342713 4.7015457827118 4.97850602752805 0.218676596105202 0.217583090378337 0.221870885698472 0.220700500226522 0.218195584238805 0.218548448214176 0.222905894301238 0.217583090378337 0.235370216400229 0.217583090378337 0.219802077393182 0.219163028080608 0.218473945738814 0.232205510534270 0.236251275624227 0.229085766370192 0.218230056347993 0.227048558203170 0.230842483191021 3 3|0 -|/ 2358335 2359089 2358646.5 2358089 2360555 - gene protein_coding_gene FALSE TRUE AT3G07370.1 ATCHIP/CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN); ubiquitin-protein ligase Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. similar to PAPP5/PP5 (PROTEIN PHOSPHATASE 5), phosphoprotein phosphatase/ protein binding [Arabidopsis thaliana] (TAIR:AT2G42810.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09517.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain U box; (InterPro:IPR003613) 0.337754586437778 3.52833852681962 0.00480610339208537 1 3.4479223064014 10.6776362392859 0.337754586437778 0.0840577758025512
AT2G40765_at 8.46691532519274 8.13125059813607 8.39158739960937 8.50816977565755 7.90109570085643 7.86131989766755 7.7485035575662 7.5929673059238 7.63632005184829 7.30573742182564 8.10773160637654 8.39797182554309 7.52415728732299 7.98065699124357 7.9899100802236 7.90198811231479 7.49615110437827 7.49161153942467 7.26220618050576 0.168598503587079 0.173726009850575 0.171241444847899 0.164137560786501 0.164191402308569 0.164216471332758 0.166566020015199 0.176641830310198 0.179634313965466 0.168901450329066 0.165305248451994 0.166026905953504 0.168854029125214 0.168120156906132 0.175611402647648 0.165229245471641 0.171709135977902 0.167451700316499 0.171087196652907 2 2|0 +|/ 17019379 17020134 17019477.111 17019276 17020403 + gene protein_coding_gene FALSE TRUE AT2G40765.1 similar to Ubiquinol-cytochrome c reductase complex 6.7 kDa protein (CR6) (GB:P48505) 0.320242548518284 3.52791952516246 0.00480962356933246 1 3.44727739708076 15.7065729632829 0.320242548518284 0.0674770957306915
AT1G18470_at 8.35474749068969 8.52967932040413 8.51948132622988 8.43738699212651 9.06129388842603 8.79841873821443 7.79166904041808 8.04163955227616 7.23357179788122 7.00094241474304 7.07782680181433 7.02430173576041 7.16952103620613 7.56588368652691 6.86589803788366 7.27846049797716 7.23628117568134 6.85570363920997 6.79959047057609 0.198564538895059 0.191030474724331 0.191867153281778 0.195461992147739 0.193783536146926 0.188629493936774 0.187014403501714 0.187014403501714 0.204006385439916 0.199141339989741 0.190023829928350 0.191903808719307 0.188066161086099 0.189253872724807 0.197997655886102 0.191534609947162 0.198435209552131 0.196883989814616 0.193467890908 1 1|0 -|/ 6356682 6357551 6357246 6356124 6360159 - gene protein_coding_gene FALSE TRUE AT1G18470.1|AT1G18470.2 zinc finger (C3HC4-type RING finger) family protein similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G68820.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90658.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains domain FAMILY NOT NAMED (PTHR13568) 0.323788866975620 3.52740115476168 0.00481398224682453 1 3.44647952033548 15.5145909456561 0.323788866975620 0.0711271986436953
AT4G20280_at 6.6793100931621 6.87032496482621 6.86484508444792 6.80402793603081 7.34400212866635 7.05384676607903 6.96249634368494 6.79341872628836 6.51130438170978 6.42212440272097 7.02070110444415 7.00354510178822 6.62072247159784 7.26978345110767 6.87496420668031 6.90957786829017 6.58390232325974 6.78409359564252 6.36624426965396 0.166322910367607 0.166517432234671 0.166168427189423 0.168777653198582 0.170080412827420 0.175737349199189 0.166089404198858 0.158953923021877 0.180562168021908 0.161335118792976 0.160161840111289 0.161135011364176 0.162322887748002 0.165399915637706 0.16275603006782 0.156610654165735 0.166439896863281 0.162285584080048 0.159219000135489 4 4|0 +|/ 10953847 10954640 10954163.889 10953557 10954984 + gene protein_coding_gene FALSE TRUE AT4G20280.1 transcription initiation factor IID (TFIID) 28 kDa subunit (TAFII-28) family protein similar to transcription initiation factor IID (TFIID) 28 kDa subunit (TAFII-28) family protein [Arabidopsis thaliana] (TAIR:AT1G20000.1); similar to transcription initiation factor IID p30 beta chain-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73490.1); similar to Os01g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043872.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain TAFII28-like protein; (InterPro:IPR006809) 0.320239930402692 3.52570826155602 0.00482824512132436 1 3.44387363623472 13.5798518137547 0.320239930402692 0.0676824692581305
AT1G42630_at 2.78495354730948 3.13587305216944 2.29937793738959 3.30846381576847 1.8705331255384 1.95176540495487 1.87394602429686 2.30066196493066 3.37643589652863 3.54295035925366 2.95832728900896 3.42212512543115 2.70884811579463 2.43308624620232 1.82457748007131 2.47940700021739 2.19112685730505 2.97021749843009 3.53246491525339 0.301325393073038 0.321083022792363 0.315834167406917 0.325188352768611 0.35459395313392 0.301325393073038 0.333799829447938 0.301325393073038 0.335813746274816 0.301325393073038 0.324958377437319 0.331301673957078 0.333921444130252 0.301325393073038 0.333776219633506 0.301325393073038 0.303746276317256 0.301325393073038 0.301325393073038 1 1 + 16027741 16028175 16027922 16027738 16028202 + gene protein_coding_gene FALSE TRUE AT1G42630.1 zinc knuckle (CCHC-type) family protein similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G40080.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.513404757525696 -3.52531739633431 0.00483154438813977 1 3.44327193524403 5.49440427999614 -0.513404757525696 0.199582675535088
AT2G18400_at 6.09613492039179 6.23166856604583 4.708290645152 4.65210841495973 4.75671280012379 4.7939243967481 5.52730062919727 5.47560356586554 5.70636616996196 5.46768452580146 6.14163588908874 6.86387050001073 5.40423098427663 6.07297160392905 6.9840491597208 5.82123747977507 4.88673448992772 6.18727098824487 5.3970724399716 0.222950834620255 0.221417981805592 0.232057210218818 0.222190200287693 0.222396339086258 0.2271749632808 0.219017021825197 0.219530820364118 0.218455841334507 0.221087631065881 0.225779755000672 0.219294601926602 0.218979086996918 0.223477986352660 0.22227239904177 0.216499984477435 0.227862688245942 0.222080268388404 0.218657994898037 2 2 - 7996772 7996976 7996880 7996561 7997668 - gene protein_coding_gene FALSE TRUE AT2G18400.1 ribosomal protein L6 family protein similar to EMB2394 (EMBRYO DEFECTIVE 2394), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G05190.1); similar to putative ribosomal protein L6 [Oryza sativa (japonica cultivar-group)] (GB:BAD10705.1); similar to Os03g0725000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051126.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, signature 1; (InterPro:IPR002358) -0.291687715584589 -3.52488073441290 0.00483523296326909 1 3.44259971716278 11.0646969167022 -0.291687715584589 0.0276796059947880
AT3G06750_at 8.74470397122908 9.42711340069184 8.80512806880276 9.14610472947147 9.94748928224711 9.96284396977031 9.43426537322835 9.64048711512748 9.75568813783183 9.67516642574485 10.8640560181068 10.7408146747685 10.7021455309005 10.3610208406877 10.5838846552000 10.5571241537763 9.6944477282850 10.3937641934848 10.0399515482032 0.125618964854177 0.112839471186407 0.123280489108003 0.114733947569035 0.112839471186407 0.119213299161759 0.117024073371325 0.114317573394279 0.124229752665223 0.115191765361536 0.113010145278746 0.112839471186407 0.112839471186407 0.121107081992995 0.112839471186407 0.113250696019502 0.120827762970076 0.114624469568841 0.113607076477810 3 3 - 2129803 2130168 2129992.727 2129629 2130321 - gene protein_coding_gene FALSE TRUE AT3G06750.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G49280.1); similar to OJ1116_C07.3 [Oryza sativa (japonica cultivar-group)] (GB:BAC00686.1); similar to Os01g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042851.1) 0.408652117322478 3.52448556467389 0.0048385735409351 1 3.44199135839438 19.5438966196516 0.408652117322478 0.136780077309298
AT3G19380_at 1.70756265161715 1.7718719933321 1.97698244115147 1.90942724855391 2.11090842968213 2.28439658672637 2.82456429068655 3.39423076083919 3.03419058988519 2.45718570389119 4.33914175459325 4.28391955328254 4.45964563381635 4.52071438507365 4.05136567581776 4.45343925773929 3.60322678402722 2.78473554040681 3.45896316732156 0.225306030580323 0.237452024329366 0.235644680438246 0.227791498782457 0.227521429354702 0.227431250616529 0.222379036244959 0.223413014947561 0.224765472554318 0.222379036244959 0.230177709708726 0.224775257092951 0.229266858123743 0.229961248388385 0.239475754445177 0.227794400442260 0.224184152665689 0.232129964135755 0.224750771521399 3 3 - 6714626 6715101 6714887.273 6714398 6716105 - gene protein_coding_gene FALSE TRUE AT3G19380.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G49780.1); similar to putative immediate-early fungal elicitor protein CMPG1 [Oryza sativa (japonica cultivar-group)] (GB:BAD16187.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.362224169235844 3.52390467343233 0.00484348842861149 1 3.44109705664319 5.77022808038723 0.362224169235844 0.104310114166456
AT1G77110_at 3.24979940448597 3.06446474171061 2.60020080837834 2.85595669205983 2.8326315708689 2.66801411771508 3.21657084542499 3.35327225485614 3.32681226227017 3.57789381611035 2.97058739650350 3.52718467266421 3.23952420607583 3.36328489686416 3.44992431648504 3.16761432399075 2.80789292661731 3.3605546656304 3.26807520634769 0.230434617759728 0.233580124085601 0.225844834612341 0.221333745982997 0.221333745982997 0.224234453443299 0.230355807328812 0.230055009628822 0.227917024124041 0.222018437143933 0.225255417826645 0.221333745982997 0.222605837179338 0.229539096516284 0.221333745982997 0.221333745982997 0.226157565444163 0.226625897991622 0.223938511067705 1 1|0 +|/ 28977842 28979083 28978292.889 28975698 28979497 + gene protein_coding_gene FALSE TRUE AT1G77110.1 PIN6 (PIN-FORMED 6); auxin:hydrogen symporter/ transporter Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux. Identical to Probable auxin efflux carrier component 6 (AtPIN6) (PIN6) [Arabidopsis Thaliana] (GB:Q9SQH6;GB:O49294); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to putative auxin efflux carrier protein 6 [Medicago truncatula] (GB:AAT48627.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.318466091834697 -3.52365903211351 0.00484556832975311 1 3.44071887380955 6.29348781469414 -0.318466091834697 0.0660212479725839
AT1G50890_at 2.75359740820747 3.03267349426807 2.74255052722316 2.71657989198825 2.67628069624438 2.69788628463156 3.74375308496156 3.36314146033004 3.3991346730605 3.42854058696575 3.24603293925185 3.16665449327352 3.51231583419668 3.40036194118911 2.83416548922502 3.56415606415256 3.88460593078214 3.34956779751037 3.74541199929085 0.208482767199207 0.203197532096201 0.207160203056301 0.205821459772964 0.201922835764239 0.227098596504402 0.205076357426771 0.207211494785198 0.216940366365915 0.204743047082520 0.209052903153908 0.203217643050010 0.201922835764239 0.212343885254624 0.207210693942568 0.208997041342909 0.213438263245002 0.209424305302534 0.202556550498291 1 1 - 18866007 18866466 18866278.818 18865839 18869707 - gene protein_coding_gene FALSE TRUE AT1G50890.1 binding similar to TOR1 (TORTIFOLIA 1) [Arabidopsis thaliana] (TAIR:AT4G27060.1); similar to Os07g0520400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059802.1); similar to potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigena] (GB:CAD45375.1); similar to putative potyviral helper component protease-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19987.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.334798435247326 -3.52303740227222 0.00485083591492696 1 3.43976180331967 6.41285534646682 -0.334798435247326 0.081884293024382
AT3G12630_at 10.3889646399879 10.6678312055679 10.6711259920206 10.7927157535016 11.0259330044905 10.8003157778765 10.356519292449 10.5467682597714 9.81389296987415 9.50764355139806 10.3270915310381 9.91957251574022 10.2967048406644 10.062388949343 9.82228645030116 10.3121499899417 10.1164059890480 9.422670729232 9.82703922756713 0.0891050259071364 0.0886379260015457 0.0907668956353813 0.0920977210337467 0.0923886218722774 0.0940743621181347 0.0902806699060836 0.0886379260015457 0.0969663718190021 0.0929776640990692 0.0887056440644406 0.0901541086471196 0.0886379260015457 0.0939647619046579 0.0901950862593431 0.0886379260015457 0.0924049414700218 0.0981737241959072 0.090362578355905 3 3 + 4012798 4013155 4012966.727 4012615 4013590 + gene protein_coding_gene FALSE TRUE AT3G12630.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (AtSAP5) (SAP5) [Arabidopsis Thaliana] (GB:Q9LHJ8); similar to DNA binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G51200.2); similar to Os08g0504700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062181.1); similar to PVPR3 (GB:AAA33773.1); similar to Os09g0486500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063521.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.325609370331022 3.52265134797961 0.00485411023626338 1 3.43916740986339 20.5318221360549 0.325609370331022 0.073349139946957
AT2G13610_at 3.53741567293028 4.23749528326374 1.63999853063956 1.56002440077527 2.39400985740439 2.15277222242608 2.38756517215326 2.59570288229296 3.96663747576067 2.7232275577145 4.56980540133243 5.34098640691256 3.36898976179516 4.22715693739071 5.16527065349324 3.59071176636756 1.86727888305620 4.20430084896248 4.10072900392264 0.256777378537049 0.255781802710179 0.282312592245588 0.276008123893464 0.259933981906975 0.270401011866789 0.260741515924904 0.255732049394916 0.265053946161823 0.255467686538896 0.255467686538896 0.262352470484658 0.260489143810746 0.259846337829939 0.258598773737277 0.255467686538896 0.265794311002062 0.257404811020755 0.260111916715271 2 2 - 5680965 5681457 5681238.364 5680770 5682913 - gene protein_coding_gene FALSE TRUE AT2G13610.1 ABC transporter family protein Identical to White-brown complex homolog protein 5 (WBC5) [Arabidopsis Thaliana] (GB:Q9SIT6;GB:Q56ZY4); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G53270.1); similar to Os01g0615500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043574.1); similar to ABC transporter-like [Oryza sativa (japonica cultivar-group)] (GB:BAB17113.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.403947798283772 -3.52261667215154 0.00485440445066086 1 3.43911402008294 6.38246163350889 -0.403947798283772 0.133826677683745
AT1G04970_at 8.64545707365803 8.90810696322144 9.37622565698542 9.44602441027581 9.60910520893096 9.24534291997361 8.67056514137586 8.44712613630355 8.34482885925442 8.34748142617626 8.2535970348318 8.14019608607325 8.40695239231222 7.69457764316338 7.78859782096835 8.64586792307239 8.21538254199951 8.50469967265794 8.13319709222148 0.177747072603413 0.176117010583290 0.191256080984205 0.177131908171014 0.174305331395087 0.177884877520228 0.188133410049971 0.177617283616923 0.186180586581016 0.186802166863463 0.179951105108280 0.175263693855539 0.184491784179237 0.200788302470341 0.194215304810394 0.174305331395087 0.183535100845933 0.204693020160188 0.192311679798066 1 1 + 1412720 1413404 1413093.545 1411169 1413626 + gene protein_coding_gene FALSE TRUE AT1G04970.1|AT1G04970.2 lipid-binding serum glycoprotein family protein similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G20270.2); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to LBP (LPS binding protein)/BPI (bactericidal/permeability-increasing protein) like-2 [Oncorhynchus mykiss] (GB:BAB91244.1); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124)|similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G20270.2); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant a [Gadus morhua] (GB:AAM52335.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant b [Gadus morhua] (GB:AAM52336.1); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124) 0.341212741951268 3.52204238498875 0.00485927977864348 1 3.43822978327141 17.2841956964750 0.341212741951268 0.0875774278926054
AT3G43250_at 0.99303368200356 1.28585286279655 1.07774288898329 1.08231736875159 0.98664122376424 1.13143333483882 1.01665654494846 1.10847449178593 1.84973071078356 1.81010760504239 1.31388043438484 1.00418319218049 1.37004889866615 0.760297731560491 1.29030388449238 0.85686982557987 0.967290105429805 1.31926575681292 1.44690212014094 0.193321194818619 0.197032753102974 0.199652934843360 0.193321194818619 0.194339034472941 0.198367686392254 0.201280596860885 0.196920783788135 0.200615647748624 0.200087679429567 0.194467293981210 0.197399510443064 0.204178222502616 0.199486044684198 0.197281705484993 0.193321194818619 0.207859038129546 0.196173482743628 0.204850056304575 3 3 + 15227858 15228399 15228074.545 15227701 15228450 + gene protein_coding_gene FALSE TRUE AT3G43250.1 cell cycle control protein-related similar to cell cycle control protein-related [Arabidopsis thaliana] (TAIR:AT2G32050.1); similar to PREDICTED: similar to CG8435-PA [Apis mellifera] (GB:XP_396635.2); similar to Os01g0588700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043437.1); contains InterPro domain Protein of unknown function DUF572; (InterPro:IPR007590) -0.311725012324868 -3.52194605309027 0.00486009806728015 1 3.43808145681663 2.49152619504772 -0.311725012324868 0.0587263211791643
AT2G44940_at 4.34176999100787 4.20490520406137 3.30479288360265 4.04135922951345 4.52412737636937 4.30887322885289 4.90328875577391 5.69740102856248 4.50420768562665 5.17883291399289 6.8508937980981 7.4157220538561 7.13519303199462 6.46750735046192 6.56228976320686 6.31982474129433 6.03523974125607 5.65535859626068 4.75458266108257 0.220598868380574 0.218511661363754 0.229191809416710 0.236744821301604 0.218572877888628 0.224435380360253 0.220611990348457 0.224434444015563 0.224510627609688 0.219195180247292 0.234556556166344 0.234062469931849 0.226862449596308 0.241612866166015 0.228437590514084 0.227289690530322 0.241858560623897 0.220281990252982 0.225772385499414 2 2 + 18544773 18545230 18545004.364 18544332 18545493 + gene protein_coding_gene FALSE TRUE AT2G44940.1 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor TINY, putative [Arabidopsis thaliana] (TAIR:AT3G60490.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE92766.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.50032974119303 3.52050752332154 0.00487233448572379 1 3.43586638422505 10.0997120729451 0.50032974119303 0.192566424679954
AT4G15000_at 9.17139261189247 9.57501079871218 8.36744533472531 8.73243701058957 9.08664729747897 8.74910937728033 9.64260373048162 9.82732833725784 9.13750667532618 8.91186706672548 9.19087809746059 9.60351067360418 8.96747529461771 8.98542525041692 9.76731331264108 8.841419188672 8.27980059139568 8.6813968613042 8.86964942574057 0.155074805985165 0.14592131399846 0.155416445727715 0.153416540038954 0.150134354104923 0.161269083999444 0.152321469574244 0.146814580765774 0.154748240055465 0.153821182889276 0.152855595234181 0.145700370490776 0.153701554778399 0.154526259347315 0.149455614049068 0.154435938486947 0.167967186637303 0.152469963435669 0.147540581318519 4 4 + 8571912 8572205 8572038.364 8571829 8572485 + gene protein_coding_gene FALSE TRUE AT4G15000.1|AT4G15000.2 60S ribosomal protein L27 (RPL27C) Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); similar to ribosomal protein L27 homolog (GB:AAA86952.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141)|Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) -0.376764714200422 -3.52006736547239 0.00487608488004045 1 3.43518858234785 18.150326877983 -0.376764714200422 0.115335654960434
AT1G68060_at 5.04938301099099 5.45273265617295 3.98389642339644 4.12347949197109 4.87721850643641 4.87318744815163 4.20494949958825 4.64126533141055 3.90474507338828 4.53449896709097 6.14135047390827 6.13770239793877 5.12794692568571 5.87285166824544 6.08327018044733 5.19368560095119 4.25092748943258 5.29034065713202 4.79834386206506 0.218377565755703 0.226461390289254 0.217041282968621 0.219160348539183 0.214036579761436 0.220189084500842 0.221998295094497 0.224248843406574 0.21868309198775 0.214996071633557 0.218776654646130 0.218531703463484 0.213150073156357 0.225363561917248 0.213516310884200 0.214357783564003 0.225476837535067 0.219163426051576 0.218404816988694 1 1|0 -|/ 25515071 25515779 25515545.2 25514604 25518163 - gene protein_coding_gene FALSE TRUE AT1G68060.1 ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1); microtubule binding Encodes a microtubule associated protein (MAP70-1). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-4 (microtubule-associated proteins 70-4), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G14840.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) 0.363546483158885 3.51985694654948 0.00487787881686458 1 3.43486455040095 9.61315840854767 0.363546483158885 0.105628875965058
AT4G34750_at 5.44949820478808 6.22598084879859 5.14651789283406 4.90043444429853 6.29036886010552 5.6325675407233 4.7739050215786 4.66833469156752 5.38035138103325 4.76572546556602 6.69021660665912 6.41486219916239 5.60142666227769 5.94572784091963 5.56954165524518 5.29853767968243 4.94979308218257 5.87822213673966 4.98223404100519 0.211024199218034 0.215570985831308 0.211024199218034 0.230880963866729 0.219046925720323 0.217750508014534 0.217946519574208 0.217575244325682 0.219520819905108 0.211024199218034 0.219607604398827 0.211024199218034 0.211281997647658 0.220312936488071 0.224689093340080 0.211673267373656 0.224158595726235 0.219190706016001 0.213032097704005 4 4 + 16577592 16577984 16577805.182 16577487 16578457 + gene protein_coding_gene FALSE TRUE AT4G34750.1 auxin-responsive protein, putative / small auxin up RNA (SAUR_E) similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19840.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79953.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.481906589898795 3.51870754889446 0.00488769004534798 1 3.43309447585835 10.8041065774501 0.481906589898795 0.182104990251458
AT1G18030_at 5.70010619113438 4.94486236677714 5.07820288809798 5.07434080785689 6.09871972031583 5.74603522790344 5.98691315596757 5.46128299874925 5.31072672079925 5.73707134466171 5.21110140409838 4.79454756570318 4.82401957263458 4.9087011814858 4.80745566166195 4.733417075342 4.1089063868108 4.65602849365386 5.91911318865979 0.205428411573491 0.206495608659861 0.208202749289146 0.207132660114924 0.205092926112621 0.211210902728636 0.209707143171583 0.202042901449935 0.206897984657646 0.205986633416453 0.207021123620173 0.209259225915138 0.203911407983729 0.210270033414513 0.208632718914260 0.202042901449935 0.216388649028575 0.212105690376706 0.207956127008623 1 1|0 +|/ 6205435 6206575 6205816 6204336 6206981 + gene protein_coding_gene FALSE TRUE AT1G18030.1|AT1G18030.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G25620.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_422661.2); similar to Os09g0314400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062840.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G51470.1); similar to integrin-linked kinase-associated serine/threonine phosphatase 2C [Mus musculus] (GB:NP_075832.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_422661.2); similar to Os09g0314400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062840.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.462040717073324 -3.51721947835375 0.00490042231774585 1 3.43080265828152 10.7168875457907 -0.462040717073324 0.170534072058984
AT3G50360_at 8.9006802619254 8.81416989649267 9.2018235864054 9.09605828487048 9.40123549746475 8.8590274209735 8.9502582109469 8.68301099115479 8.3534203799826 8.20201815969947 8.82074720026909 8.52065145258154 8.41361968204175 8.55262373731151 8.49393706321098 8.5360853209519 8.68336414263385 8.6376208126756 7.90670381375982 0.143413216487980 0.140848877064080 0.148547194833986 0.151929340233246 0.154434613997582 0.148565073060238 0.145717395786016 0.144422138493214 0.147064878525654 0.145345420104369 0.140732398410685 0.142794887972764 0.143433620386079 0.142643215968924 0.147466770761411 0.147651022071993 0.145634424993353 0.144568936530503 0.162212402003082 3 3|0 +|/ 18685668 18686459 18685954.444 18685319 18686694 + gene protein_coding_gene FALSE TRUE AT3G50360.1 ATCEN2 (CENTRIN2); calcium ion binding similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G37010.2); similar to Caltractin (Centrin) (GB:P41210); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.365395041305414 3.51691264579462 0.00490305188444463 1 3.43033007109313 17.3564723325826 0.365395041305414 0.107249364993058
AT2G39240_at 1.34816682573836 1.84316086453958 1.29180085068397 1.80698563217079 1.53813127471169 1.18579587381661 2.92372471998317 2.29820588618132 2.29097045811268 2.65355527719178 1.78068910425452 1.95787918865605 1.86142382893130 1.97306115766084 1.68559811173352 2.01632450129482 2.09911731485235 1.67785447937183 1.57703457886503 0.193226818709342 0.20051454931596 0.195155932210849 0.191519058254239 0.193813418101255 0.192862288437063 0.191612783641730 0.200019725424287 0.203849377850755 0.196367756361730 0.201340454138785 0.190449241665259 0.195846581627742 0.193898113744073 0.198578403156104 0.199215888112054 0.202167091867335 0.206893650906779 0.192572116505602 2 2|0 -|/ 16391871 16392735 16392218.222 16391864 16394905 - gene protein_coding_gene FALSE TRUE AT2G39240.1 RNA polymerase I transcription factor similar to RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis thaliana] (TAIR:AT2G34750.1); similar to putative RNA polymerase I transcription factor RRN3 [Oryza sativa (japonica cultivar-group)] (GB:BAD45608.1); contains InterPro domain RNA polymerase I specific transcription initiation factor RRN3; (InterPro:IPR007991) -0.469998071738466 -3.51688311068746 0.00490330507795212 1 3.43028458029655 3.80716994042863 -0.469998071738466 0.175276996497275
AT2G44000_at 0.586908213499135 0.815522726678641 0.476800325631653 0.239829801310138 0.405058145412766 0.471832627680024 0.939341339929422 0.844112472407767 0.737400503648848 0.831391064148935 0.218676594088489 0.34694723550399 0.663260760655105 0.267124460950519 0.151797425096928 0.704125862379458 0.850967132383814 0.186375854911342 0.383167207525761 0.210718461126707 0.199187218159803 0.199187218159803 0.199738820978098 0.20320041363974 0.204469957607668 0.200440957547820 0.203318697099157 0.215480166582527 0.212178103059863 0.200693146760243 0.203897803991449 0.211938278823491 0.199187218159803 0.199187218159803 0.201490402186703 0.207287696761633 0.205924177373792 0.207307678569465 2 2 + 18221754 18222190 18221923.455 18221400 18222647 + gene protein_coding_gene FALSE TRUE AT2G44000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64065.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.312542236240869 -3.51445702788015 0.00492414894635657 1 3.42654757819849 1.13458187699572 -0.312542236240869 0.060432262954715
AT1G59710_at 5.77343667547529 5.88602239699334 5.59849577006253 5.68780061946046 4.76892297337164 4.82958980955253 4.77723111223293 4.0275258643747 4.54378455670625 3.98815862290537 5.88192306928235 4.59224493540214 4.78527350067634 5.60206177640518 3.72463125035744 4.52289114000777 3.94303220642819 4.91588284090705 3.61527910217795 0.309296664011014 0.293066925850579 0.30094507734118 0.301482220671691 0.292334833304957 0.293187195955666 0.299061863795131 0.289894970627647 0.309847560373744 0.298684572436951 0.292355560393741 0.289894970627647 0.293586928737254 0.289894970627647 0.296622511751488 0.291161892177488 0.307535989063551 0.289894970627647 0.296006671420876 1 1 + 21942605 21943154 21942839.455 21942032 21943849 + gene protein_coding_gene FALSE TRUE AT1G59710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27100.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 0.401033388423087 3.51435990017768 0.00492498531975911 1 3.4263979565525 9.5661614946220 0.401033388423087 0.132518446354355
AT1G78000_at 7.36621334845186 7.51847790171464 5.37264180924423 4.96560189007274 6.27425407063476 5.60035195831338 4.26505470624787 3.82938499638838 2.48071281566893 2.8450741638212 1.72976453040577 1.87371764446754 1.82572114394287 1.61009961959045 1.85222676206910 1.42585691378833 2.40824637030045 2.32201059828282 2.38650881468788 0.297456925183167 0.299059050867107 0.293100191517667 0.279960902892262 0.288518383788267 0.29539443088199 0.288380918448502 0.286688886421080 0.284026807481754 0.282620022055426 0.279701587415399 0.288173530561425 0.279694394255192 0.286198538572063 0.288621674791386 0.283193375162155 0.287272732990813 0.290897272022617 0.279088985431597 1 1|0 +|/ 29336800 29337734 29337354.6 29334629 29338040 + gene protein_coding_gene FALSE TRUE AT1G78000.1|AT1G78000.2 SULTR1;2 (SULFATE TRANSPORTER 1;2); sulfate transporter|SULTR1;2 (SULFATE TRANSPORTER 1;2) Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. Identical to Sulfate transporter 1.2 (SULTR1;2) [Arabidopsis Thaliana] (GB:Q9MAX3;GB:Q9SH00); similar to SULTR1,3 (sulfate transporter), sulfate transporter [Arabidopsis thaliana] (TAIR:AT1G22150.1); similar to SULTR1,1 (sulfate transporter 1,1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT4G08620.1); similar to SULTR3,1 (SULFATE TRANSPORTER 1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G51895.1); similar to sulfate transporter [Brassica napus] (GB:CAC39420.1); similar to sulfate transporter [Brassica napus] (GB:CAC94920.1); similar to sulfate transporter 2 [Lycopersicon esculentum] (GB:AAK27688.1); contains InterPro domain Protein of unknown function DUF52; (InterPro:IPR002737); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -0.440690061502246 -3.51321014188171 0.00493489707026826 1 3.42462672868929 7.87485794142444 -0.440690061502246 0.157927731405351
AT1G52080_at 3.11564938397483 4.01009116735238 5.16293708031528 5.08458605924633 4.63998047213446 4.72126602745593 4.98160421826123 4.87496632399151 4.02579004047066 4.01487037266535 4.49535747297013 3.92952129161345 4.56954737095217 4.38209207768619 3.36705147327946 4.29742589791703 4.37262058571868 4.13494425610039 3.87384846325473 0.254479656221845 0.245462268358203 0.252737200748936 0.244112021817790 0.243196971179881 0.252253690121461 0.248467322978278 0.246921521127650 0.254713444314639 0.252939557307967 0.243801004969467 0.24703167675356 0.243196971179881 0.244796447801512 0.245437317919072 0.244575878421805 0.255420684396831 0.25208901059205 0.244759732410544 1 1 + 19374966 19375507 19375236.273 19372800 19375734 + gene protein_coding_gene FALSE TRUE AT1G52080.1 AR791; actin binding unknown function similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to Actin-binding, actinin-type [Medicago truncatula] (GB:ABE90348.1) 0.439340865437893 3.51313121815653 0.00493557820157692 1 3.42450514039154 8.6564215976298 0.439340865437893 0.157103134550372
AT2G29340_at 8.22680655001465 8.46021146467867 8.21672140017257 8.31515824524747 9.12678183031217 8.49156798155043 8.93810752280783 8.97390524897657 8.58273486262824 9.17652713088179 7.97050399832812 8.26573648861424 8.2695382348875 8.41883976397542 7.83874241334484 7.8209028175382 8.36276821414336 8.46981906710437 8.71819772747778 0.178641344066679 0.159583127235089 0.172139488678225 0.163240702273348 0.164172156638076 0.166253287131913 0.163661622327624 0.165321749634550 0.178629370744457 0.175048014650906 0.164226919941835 0.169434318630123 0.179080654021077 0.168483877495188 0.166277893973535 0.164931233929679 0.170978660257360 0.163344183971252 0.157723848479136 2 0|2 /|+ 12604429 12605060 12604769 12604192 12606280 + gene protein_coding_gene FALSE TRUE AT2G29340.1|AT2G29340.2 short-chain dehydrogenase/reductase (SDR) family protein similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29320.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0268900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049675.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.380456932276346 -3.51300802064941 0.00493664161973954 1 3.42431534362667 17.095120671339 -0.380456932276346 0.118507168838892
AT3G02760_at 7.33646353937397 7.51593920564458 7.19895847663057 6.95466531799501 7.06537209063531 6.74045253339378 7.33688290558714 7.44070972912765 6.85599184432546 7.33266109818431 6.68671776948158 7.41838015208375 6.71276850599314 6.8367842432848 7.17565185197842 6.94969382653496 6.44640288670274 7.05510671013504 7.27195522295626 0.165946844297877 0.165227520918539 0.168015213430406 0.161803602421586 0.164965515420291 0.161115574105427 0.169087270444015 0.167357886112449 0.163812297392977 0.165376894424678 0.165926839614593 0.165837928461426 0.171262451504686 0.168059085279582 0.17081396550335 0.160956065495007 0.187296286106957 0.168448435294842 0.163399324232749 3 3 - 597617 598264 597990.818 597366 599445 - gene protein_coding_gene FALSE TRUE AT3G02760.1 histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative similar to ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1), histidine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G46100.1); similar to Os05g0150900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054669.1); similar to histidyl tRNA Synthetase [Oryza sativa (japonica cultivar-group)] (GB:CAB06653.1); contains InterPro domain Histidyl-tRNA synthetase, class IIa; (InterPro:IPR004516); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.33049227607535 -3.51137327855507 0.00495077472726288 1 3.42179674219954 14.2305426240133 -0.33049227607535 0.07897123332719
AT1G16610_at 6.7966204902301 6.95177507710083 6.45806398008071 6.61308846332967 6.6870452320611 6.46001631646506 6.5153923922885 6.32595880244077 7.35965594594258 7.41545555993108 6.88879940017354 6.81203922763984 6.87572582145688 6.94488791791437 6.86150020415305 6.97963548908521 6.69737245903839 6.95750155491151 7.46704893225168 0.181402936028017 0.175937770408683 0.175937770408683 0.175937770408683 0.184259565004617 0.185512583410425 0.179577309934507 0.182493893215358 0.190615101904298 0.175937770408683 0.182881386952699 0.179941900150821 0.177677012067998 0.180003915344158 0.181081385298085 0.175937770408683 0.185004088508132 0.183490248110841 0.179862124770160 1 1|0 -|/ 5676804 5677276 5677039.222 5675697 5678773 - gene protein_coding_gene FALSE TRUE AT1G16610.1|AT1G16610.2 SR45 (arginine/serine-rich 45); RNA binding SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. similar to splicing factor PWI domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G29210.1); similar to putative ar (GB:ABB55376.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.314876956304713 -3.50769706955124 0.00498270937499947 1 3.41613199350566 13.7466132135854 -0.314876956304713 0.0637096813208763
AT3G28890_at 3.54045422450928 3.97133409128478 4.92118857957292 5.12962493158037 3.67851150539286 3.59804841447346 2.30644050606082 1.98034048066253 3.26814366291727 2.22816338561286 1.86988957462991 1.77815812135071 2.19276891695253 2.2470673338626 1.66382489143376 2.14157270372042 2.39715358331353 2.12917312639655 2.66913889975889 0.311338798060251 0.308354089937815 0.332590277789937 0.321311137144153 0.299380710825734 0.296117113529447 0.295646909738836 0.295646909738836 0.296013518948997 0.303298403681427 0.295646909738836 0.298285613803227 0.307271049159849 0.295646909738836 0.295646909738836 0.295817564049624 0.295646909738836 0.295646909738836 0.295646909738836 3 3 - 10897956 10898381 10898207.455 10897214 10900078 - gene protein_coding_gene FALSE TRUE AT3G28890.1 leucine-rich repeat family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G11010.1); similar to NL0E [Lycopersicon esculentum] (GB:AAD13303.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.356418373743357 3.50673698489442 0.00499108428904318 1 3.41465237031520 6.02787601546905 0.356418373743357 0.101191664547186
AT3G10960_at 3.44195831475233 3.69942307181598 3.66912160178893 3.64956273405172 3.69551681328065 3.83772065219224 2.79752858756922 3.1806831474112 2.66482911171805 2.99356424530622 2.76926658897864 3.03392445931457 3.21981693811638 3.35289207057675 2.57197726899518 3.16652946615305 3.29976559787821 2.83629238948802 2.72345045777109 0.236706068838487 0.234831259447760 0.234845249974108 0.247096556286719 0.230133192615441 0.236791983372936 0.228152317899894 0.236606120879058 0.237462207505201 0.230800264692981 0.232197112694348 0.228152317899894 0.238594559064928 0.230592596243217 0.240336114821195 0.228848586129837 0.252276552901871 0.235290401208401 0.229050620650014 3 3 - 3425157 3425558 3425383.727 3424818 3427002 - gene protein_coding_gene FALSE TRUE AT3G10960.1 xanthine/uracil permease family protein similar to xanthine/uracil/vitamin C permease family protein [Arabidopsis thaliana] (TAIR:AT5G50300.1); similar to Os05g0332600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055224.1); similar to hypothetical protein [Neurospora crassa OR74A] (GB:XP_965513.1); similar to Os11g0427700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067781.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.335221164556842 3.50658059096992 0.00499244989828913 1 3.414411337502 6.40906738320914 0.335221164556842 0.0836589988825532
AT1G75340_at 5.26062108898853 5.5534729868005 5.23542384479656 4.98617687065896 5.06603965222906 5.05533225605936 5.95911949392487 5.27473620065297 5.63131617741001 5.43859599066072 5.35638674967581 5.34364858768886 4.99835635102692 5.02434414003836 4.99439973777119 4.85186857980381 5.60453055748161 5.06261594599714 5.54487058260913 0.229132329403657 0.228638590684562 0.246605851004983 0.245309182930742 0.233648022291156 0.24023480961556 0.233571737902131 0.232442134098560 0.249006977114754 0.227983113166364 0.227385767151310 0.231814154364817 0.225781768192864 0.229646175904356 0.2314232716807 0.233422297891126 0.236927869656019 0.236234436053721 0.231824972894640 1 1|0 -|/ 28273143 28273827 28273368.625 28272631 28275609 - gene protein_coding_gene FALSE TRUE AT1G75340.1 zinc finger (CCCH-type) family protein similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to Os06g0704300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058507.1); similar to hypothetical protein AN4595.2 [Asper (GB:XP_662199.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.404993186181777 -3.50490259891739 0.00500712606577583 1 3.41182508872698 10.6452551733032 -0.404993186181777 0.135865152481902
AT3G25520_at 10.0154748061799 9.96313670847955 9.33924617047315 9.57275793251596 9.53656681459915 9.4313426429829 10.1311208872822 10.1538088851280 9.43917403884985 9.5269816076900 9.53630902159638 10.1244791660511 9.41162403372252 9.44074778504775 10.1592227424353 8.98750616994885 9.4298464740845 9.35901981299144 9.71347677296415 0.109604397711698 0.108284800145097 0.116527701382896 0.115903888978196 0.110263011718676 0.10940409849149 0.107229038286668 0.109268986827778 0.116885283664519 0.113605378985395 0.107420937848263 0.109835996072786 0.110827827163060 0.111152147047613 0.110299845683634 0.114788124434369 0.118739193941423 0.107733730808212 0.106263294570093 3 3|0 -|/ 9271010 9271670 9271342 9270524 9272627 - gene protein_coding_gene FALSE TRUE AT3G25520.1 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabidopsis Thaliana] (GB:Q8LBI1;GB:Q940R7); similar to 60S ribosomal protein L5 (RPL5B) [Arabidopsis thaliana] (TAIR:AT5G39740.1); similar to 60S ribosomal protein L5 (GB:Q6UNT2); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484); contains InterPro domain Eukaryotic ribosomal protein L5; (InterPro:IPR005485) -0.299845002028938 -3.50363783242946 0.00501821734712289 1 3.40987556123957 19.3259177929065 -0.299845002028938 0.0454095869888383
AT4G19430_at 1.86516991039723 1.76133811625166 2.00180440849465 1.72145044183159 3.03932190755755 3.03612451126193 1.07580590012277 0.8556957051617 1.61687284275791 1.55876119905445 1.11907997436153 0.93831146331176 1.13149854147432 1.15580500210027 1.22941078194063 1.28615108814966 1.39592630029834 1.25707750846886 1.683028460151 0.190268913542696 0.191424279439040 0.193308200052898 0.188237209071508 0.196569904148551 0.213475018055657 0.187313104633278 0.195050310288357 0.187313104633278 0.200993039677566 0.188990738433985 0.187313104633278 0.187313104633278 0.192192635373325 0.188702014851045 0.198847478557965 0.189750957766231 0.188828430306673 0.193166227750137 4 4 - 10598626 10599074 10598875.636 10598456 10599162 - gene protein_coding_gene FALSE TRUE AT4G19430.1 unknown protein 0.314888162247572 3.50231081969553 0.00502988163362147 1 3.40782992672127 3.32394473755203 0.314888162247572 0.0642492351148702
AT1G06520_at 2.30695981351127 2.27995164245077 2.00423864032517 1.87184041361541 2.36340962509516 2.56382610695462 2.57182133414752 2.09466254025637 3.26524564196159 3.53852642462653 3.0670032019821 2.45294240170459 2.54502069247385 3.21251230778339 2.84813956770926 3.39439393781268 2.14257092730766 3.20682390839739 3.50554664945086 0.212125874285431 0.209558498031434 0.221469560296288 0.214568916322356 0.209620890990460 0.214462280430092 0.209999229816869 0.212064653474320 0.215078960366959 0.221279537207724 0.213961964257740 0.216555441797773 0.209448971186275 0.212297211961348 0.219608245609483 0.207689885181950 0.21328852315151 0.218919674473173 0.213491858579250 1 1 - 1994340 1994708 1994501.636 1993977 1996111 - gene protein_coding_gene FALSE TRUE AT1G06520.1 ATGPAT1/GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels. Identical to Glycerol-3-phosphate acyltransferase 1 (EC 2.3.1.15) (AtGPAT1) (GPAT1) [Arabidopsis Thaliana] (GB:Q9SHJ5;GB:Q8L8V5); similar to ATGPAT2/GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT1G02390.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE87665.1); similar to Os03g0735900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051189.1); similar to Os01g0855000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044839.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.345141919980261 -3.50152179225891 0.00503683029491541 1 3.40661353705178 5.40464648462421 -0.345141919980261 0.0925649988982654
AT3G60190_at 9.27819799433558 9.66970498701294 9.66306164349007 9.6434953737016 9.66517071434077 9.22433903027938 8.17773312339109 8.20087386736757 8.54930262695975 8.2722386242542 8.48995891797378 8.44672943672262 8.7078892393075 8.54125561850788 7.96494129481659 8.5404805113876 8.25063807137417 8.31989570224265 8.41112381810047 0.183343401268150 0.179845633521009 0.184552411628706 0.182310364004677 0.185410360731191 0.180398165277287 0.174843897430236 0.175810518426950 0.190185088073248 0.185305587678624 0.177960787064307 0.170883750516543 0.174443624654314 0.184968456116696 0.183753358906903 0.178920528753495 0.184563913145255 0.18653212618518 0.180097847260897 3 0|3 /|- 22255403 22255896 22255681.9 22255144 22258808 - gene protein_coding_gene FALSE TRUE AT3G60190.1 ADL4/ADLP2/DRP1E/EDR3 (DYNAMIN-LIKE PROTEIN 4); GTP binding / GTPase At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central µdynamin 2µ domain and a C-terminal GTPase effector domain (GED), a typical structure for plant dynamin-related proteins. However, this class lacks a PH domain and a proline-rich domain, which are found in classical animal dynamin-like proteins. Based on work on animal dynamins, the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles, processes that are essential to vesicle trafficking and membrane compartmentalization. The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E. edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection. Identical to Dynamin-related protein 1E (Dynamin-like protein E) (Dynamin-like protein 4) (Dynamin-like protein DLP2) (DRP1E) [Arabidopsis Thaliana] (GB:Q9FNX5;GB:Q9M1C4;GB:Q9SE82); similar to ADL1D, GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT2G44590.3); similar to ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN), GTP binding [Arabidopsis thaliana] (TAIR:AT5G42080.1); similar to ADL1C (DYNAMIN-LIKE PROTEIN 5), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G14830.1); similar to SDL5A (GB:AAC49183.1); similar to Dynamin central re (GB:ABE90709.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58207.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.357112220014811 3.50125338567426 0.00503919629609406 1 3.40619973980860 17.5996280694797 0.357112220014811 0.102165093965960
AT4G22840_at 5.35866633355826 5.84703575426343 5.4614738550215 5.3370938831136 5.83873906695407 5.14692886540041 5.12225424899836 5.22562275275545 4.64235849422004 3.9268647782555 4.70453041330231 5.52040098524661 5.27035316535683 5.57403523381085 4.46290578460012 5.87698941618644 3.94793459481075 4.87700515503882 4.14073494812173 0.265956650156811 0.267826374748518 0.26933974175989 0.274070683541638 0.263621961374854 0.264194333095465 0.269241197156992 0.263500584770588 0.274928790379626 0.266798261997801 0.262442275010309 0.264241235507822 0.263172145089837 0.266286702195634 0.26374453110989 0.264508882530148 0.277538292156343 0.265543392287111 0.268406485833185 4 4|0 -|/ 11991670 11992487 11992190.1 11991508 11993781 - gene protein_coding_gene FALSE TRUE AT4G22840.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G12030.2); similar to Os02g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046843.1); similar to Os09g0520600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063701.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) 0.425140374286763 3.50069854718692 0.00504409081209291 1 3.40534433487942 10.0501878868797 0.425140374286763 0.149194948292771
AT4G00100_at 10.5768629290613 10.6255877509561 10.1678450486700 10.1506880281763 10.1025459709870 10.2310361060747 10.5008287339570 10.8553686589969 10.2681867255552 10.2572028531135 10.0886228219392 10.3939443796539 10.0284437492269 9.87806394366714 10.7010669947551 9.79439078590014 9.88589684119671 9.82215662002097 10.1638988346243 0.104824464670025 0.104707815012172 0.103585433038653 0.104989412836845 0.104172406669141 0.105471750487188 0.104798349702234 0.1078972858984 0.108820724916015 0.106416878190923 0.105711648232245 0.100759734268284 0.106045546298333 0.107645627426448 0.108432760896271 0.106681763475012 0.106368656663481 0.112728204098747 0.102215119102694 4 4|0 +|/ 37273 37786 37531.625 37084 38312 + gene protein_coding_gene FALSE TRUE AT4G00100.1 ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;GB:Q93V69;GB:Q93WJ4;GB:Q9LZY6); Identical to 40S ribosomal protein S13-2 (RPS13B) [Arabidopsis Thaliana] (GB:P59224;GB:O81311;GB:P49203;GB:Q9SLR4); similar to 40S ribosomal protein S13 (RPS13A) [Arabidopsis thaliana] (TAIR:AT3G60770.1); similar to cytoplasmic ribosomal protein S13 [Panax (GB:BAA96366.1); contains InterPro domain Ribosomal S13S15 N-terminal; (InterPro:IPR012606); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) -0.316161383575928 -3.49973783756215 0.00505257728011581 1 3.40386312339608 20.5532634390979 -0.316161383575928 0.065869239275209
AT1G06700_at 8.39088325312678 8.18191339846736 8.41094519222459 8.48992709491797 9.17390719986093 8.627182555582 8.53094977861879 8.29833360106114 8.44208459861241 8.49525689162765 9.18624355366789 8.89661355982527 8.98141406666976 9.02334666598391 8.69452279294477 8.86435122857407 8.6140755358533 8.5974207038552 8.40744327934839 0.154107588943733 0.143528193771150 0.145528175470986 0.144257554443230 0.138141126701915 0.141498356536209 0.143788608025134 0.138958225883974 0.134613403395592 0.133782534624576 0.140728728365016 0.142932845873298 0.134216474348629 0.137501431039852 0.136243979636594 0.139706407207565 0.146459418141537 0.136114052421339 0.140610435740043 1 1|0 -|/ 2052788 2053530 2053334.9 2052480 2055547 - gene protein_coding_gene FALSE TRUE AT1G06700.1|AT1G06700.2 serine/threonine protein kinase, putative|kinase similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G30740.1); similar to protein kinase Pti1 [Glycine max] (GB:AAO92595.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.366978713193403 3.49869588045136 0.00506179803520263 1 3.40225654897053 17.1657603108747 0.366978713193403 0.109848779034690
AT3G55630_at 9.00997123953627 9.04458622862392 8.59844406508504 8.63133421155751 9.4174783100614 8.7733558993232 9.5499237272802 9.2942048046234 9.09811628843708 9.5238538294891 8.52368169165788 9.12691695016745 8.90016455808448 9.126189341759 8.82347311632685 9.43495626344449 9.18406364480179 8.95472920576714 9.58481767226844 0.111246100146733 0.105224985109128 0.115073148273612 0.108585090685546 0.109944716015006 0.115786520815311 0.113075866775042 0.111741198211975 0.117063076516947 0.112527089782926 0.112782809974720 0.109363095979828 0.108467360303666 0.109530909384696 0.106059221353344 0.106955950652791 0.117715957505535 0.109026189294797 0.106807283551759 3 3 + 20649559 20650332 20649924.545 20647648 20650471 + gene protein_coding_gene FALSE TRUE AT3G55630.1|AT3G55630.2|AT3G55630.3 ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase similar to ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT5G05980.2); similar to putative folylpolyglutamate synthetase [Oryza sativa (japonica cultivar-group)] (GB:AAG13624.1); similar to Os03g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048721.1); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645); contains InterPro domain Mur ligase, middle region; (InterPro:IPR013221) -0.381254564369781 -3.49808376047492 0.0050672230244294 1 3.40131268573394 18.2456795323777 -0.381254564369781 0.120215808290643
AT2G41330_at 2.45468288263551 2.36321117862986 2.02290793426935 1.84843246488206 2.18693660274881 2.13454840270415 3.12769015625998 3.26553227313667 3.30759001251166 3.09927489467806 4.18003185819075 3.30068731491172 3.47709770613575 3.64733747469839 3.59587697219234 2.94922044646562 3.2474742456104 3.37473084387649 3.52844289476397 0.215322688555324 0.224614898003619 0.219994968385092 0.216399814415895 0.217529272550751 0.214153905269450 0.21212698972921 0.213428254501205 0.218262792237711 0.213566533897172 0.211528979643555 0.214945062901527 0.215258240475457 0.211898573191891 0.211528979643555 0.220647853249787 0.217705880748519 0.221693401138826 0.211528979643555 2 2 + 17234764 17235228 17235001.636 17234026 17235456 + gene protein_coding_gene FALSE TRUE AT2G41330.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G57070.1); similar to Thioredoxin fold [Medicago truncatula] (GB:ABE87618.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.297392465536065 -3.49686267922053 0.00507806285814461 1 3.39942972662106 5.81715592444734 -0.297392465536065 0.0425847179380854
AT1G12580_at 6.6410225881389 6.89588817992361 6.35739307615987 6.35326764499531 6.53677908354129 5.91570228621346 6.76157150233535 6.47117703771285 6.99534808909926 6.54720024226237 6.6385916999094 6.7376393633553 6.61239183097744 6.57113666248943 6.0398909795065 6.47346260451053 6.3510220999162 5.95297837216322 6.86011865633152 0.172771241887431 0.173991416359124 0.176924207776050 0.169562007199448 0.171261814294299 0.180569923837726 0.177216242580388 0.171674160629721 0.176883874660739 0.175333687409009 0.170689813973524 0.169562007199448 0.169562007199448 0.176751307994873 0.186386096474074 0.172791580037257 0.178685630221310 0.182192197927619 0.176909713367618 1 1 + 4284858 4285612 4285067 4282897 4285827 + gene protein_coding_gene FALSE TRUE AT1G12580.1 PEPKR1 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 1); kinase similar to CPK34 (calcium-dependent protein kinase 34), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19360.1); similar to CDPK-like protein [Solanum tuberosum] (GB:AAM29184.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.390189549297207 -3.49606343285037 0.00508517085792888 1 3.39819718043432 13.1031142736282 -0.390189549297207 0.126583166591314
AT1G24040_at 7.05440915891203 7.52998542460617 7.61639161073772 7.77860383300077 8.47119141599111 7.72862439323426 8.63393216640019 8.13715193906356 5.45026880881907 7.04334736350816 6.98990555068098 7.13828021276932 7.31850776016692 7.16647461901343 6.98626437966553 7.67132723942723 7.88361015471648 7.06127134331437 6.69219279223635 0.220750902132389 0.216399692464936 0.218246657092798 0.227957401218243 0.221446241355272 0.229206566425271 0.221058462647144 0.218883168494554 0.285068932685299 0.234678585092711 0.227255843469628 0.216399692464936 0.224638574744995 0.22704811830634 0.228135710355898 0.222762321667387 0.237704100796747 0.235470486375869 0.219372668033475 1 1 - 8505615 8506355 8506062 8503766 8506792 - gene protein_coding_gene FALSE TRUE AT1G24040.1|AT1G24040.2 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase [Medicago truncatula] (GB:ABE83214.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.470759321805116 3.49592347893124 0.00508641657215997 1 3.39798134648214 14.7048986489051 0.470759321805116 0.177385839327528
AT2G14260_at 10.3700649318321 10.2300051252063 10.5353765034677 10.4555790105201 10.7221584614474 10.6254629305094 10.3763977254506 10.1966325041123 10.2893060071352 10.190696972613 10.3678536742438 10.3449901573652 10.7200678058155 10.4652943801171 10.5304069851239 10.6815403018753 10.7910624349207 10.5941408953306 10.2867236270426 0.0603640893263321 0.0605158229355414 0.0598131640387287 0.0609481551344943 0.0621159053082142 0.0624801506010137 0.0603999224881254 0.0625136228597791 0.0702082079311705 0.06223923780748 0.0626061106749326 0.0608187200070765 0.0616873320362722 0.0629335831697879 0.0658756398741477 0.0603330511601667 0.0622650687122719 0.0598131640387287 0.0615935918859739 2 0|2 /|- 6048550 6049681 6049008.25 6048335 6051056 - gene protein_coding_gene FALSE TRUE AT2G14260.1|AT2G14260.2 PIP (proline iminopeptidase); prolyl aminopeptidase encodes proline iminopeptidase Identical to Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl aminopeptidase) (PAP) (PIP) [Arabidopsis Thaliana] (GB:P93732;GB:Q9SKJ3); similar to proline iminopeptidase [Stigmatella aurantiaca DW4/3-1] (GB:ZP_01463931.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S33, proline iminopeptidase 1; (InterPro:IPR005944); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Peptidase S33, prolyl aminopeptidase; (InterPro:IPR002410); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.298856599293975 3.49525259842953 0.00509239235916172 1 3.39694670385790 20.8477072065412 0.298856599293975 0.0450108326926232
AT3G29375_at 6.48714892775983 5.87125081007452 5.23521043590088 5.20125861907444 6.06097311783172 5.57322502017704 6.6322203827338 6.41283146319143 4.60095400857201 5.63379896347097 4.79939482141706 5.90510563438146 5.3304014295325 5.09037122032952 5.74532675295414 5.45101175327212 4.59174550877674 5.19746695856294 5.5297052857491 0.210113604115523 0.203650728467561 0.200299781935813 0.205946852010381 0.200234804287226 0.213050890496918 0.196985532839165 0.204693247995286 0.199495532285824 0.201596985407444 0.203769651236001 0.202160453795923 0.202003769972341 0.205746384580066 0.199608948112545 0.203478879473398 0.206350187140672 0.201787609330108 0.196985532839165 3 3 + 11282380 11282995 11282702.182 11281388 11283196 + gene protein_coding_gene FALSE TRUE AT3G29375.1 XH domain-containing protein similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G80790.1); similar to Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger; Prefoldin [Medicago truncatula] (GB:ABE87525.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379) -0.412081253527295 -3.49474767396063 0.0050968946690905 1 3.39616797400044 11.1936010616766 -0.412081253527295 0.141282247454685
AT4G18710_at 9.51479033913764 9.23720753699285 9.25008062243523 9.28247797414403 9.9420238734734 9.90563845571214 9.35261254427555 9.41813860171622 9.72547483115613 9.31799559330146 10.0398806630053 9.81432672103717 10.0379438311314 9.83954136190492 9.72824278949462 9.81944188791075 9.69983831562862 9.98772680557506 9.39780999467208 0.106611999529795 0.102225002608958 0.113557361958145 0.108499712171534 0.106641101576506 0.109784169385108 0.107697001979826 0.0997800980171383 0.103830593440402 0.105247050575092 0.105266012316615 0.102006542750433 0.106297708709202 0.108299627631577 0.102136969811397 0.0997800980171383 0.108859876925587 0.107101372286503 0.100532328907880 4 4|0 +|/ 10298027 10298829 10298343.444 10296284 10299373 + gene protein_coding_gene FALSE TRUE AT4G18710.1 BIN2 (BRASSINOSTEROID-INSENSITIVE 2); kinase ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. Identical to Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1) (ASK7) [Arabidopsis Thaliana] (GB:Q39011;GB:Q8S9H8;GB:Q9SN42); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) [Arabidopsis thaliana] (TAIR:AT2G30980.1); similar to GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G06390.2); similar to shaggy-like kinase etha (OSKetha) [Oryza sativa (japonica cultivar-group)] (GB:CAA73848.1); similar to putative shaggy-like kinase dzeta [Oryza sativa (japonica cultivar-group)] (GB:BAA92966.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80751.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.302404483247531 3.49471629543303 0.00509717460002508 1 3.39611957906612 19.1635185451547 0.302404483247531 0.050072153086386
AT1G80170_at 3.53982189685844 3.70068538462924 3.17237609066991 3.26683170349126 3.15891248839084 2.73870525161463 3.63027677402769 3.36666588629946 3.88179981253562 4.26514022634986 3.73542847532513 4.61917498211253 3.66541408102268 4.29296965573143 4.31126181873248 4.16353331472332 3.60576099993199 3.5212789246123 4.45607755896891 0.223940398447353 0.221875656416035 0.222836740820609 0.216633357159104 0.215880284643456 0.22153181899813 0.218066393344943 0.215952017175414 0.232690787799693 0.218984339065332 0.218354828308150 0.221042186959227 0.216573670820405 0.217549650296081 0.224536671801399 0.216664726453256 0.215880284643456 0.219330532781188 0.215880284643456 1 1|0 -|/ 30158550 30159308 30158913 30158300 30160605 - gene protein_coding_gene FALSE TRUE AT1G80170.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G70500.1); similar to polygalacturonase [Arabidopsis thaliana] (TAIR:AT1G23460.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABD28401.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.343404593169763 -3.49428990902428 0.00510098000089549 1 3.39546195664294 7.4169637582354 -0.343404593169763 0.091713052907686
AT4G16860_at 10.8993307707153 11.0017787203789 10.8562607764698 10.7656713196940 10.9627303803375 10.7503750119251 10.3903529149990 10.5049115095845 10.7860694908624 10.8385312615227 10.2803318961821 10.1460988202155 10.0767019807443 10.4143596539304 9.3812787376597 10.4390547034417 9.97688716896268 10.0492141138452 10.8708463807458 0.111736284977573 0.112743856215985 0.112766110554831 0.111062628013466 0.110623893461089 0.11109182004407 0.115736280114312 0.112088619673205 0.114675242173512 0.111520255084479 0.115444232314303 0.110581196418394 0.113333641210615 0.115019716472692 0.119297344788930 0.109323273662604 0.115320307616787 0.114372184822618 0.110229956733887 4 4 - 9488610 9489167 9488817.364 9488485 9495835 - gene protein_coding_gene FALSE TRUE AT4G16860.1 RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) Confers resistance to Peronospora parasitica. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.300829466741875 -3.49402210507431 0.00510337158166742 1 3.39504890989479 21.2300797232212 -0.300829466741875 0.0479959259554745
AT1G70530_at 9.67047546001576 9.77846086164951 10.0965761309987 9.91906287970716 10.1988258884783 10.0576536006606 9.0450568470521 8.85295477946432 8.31580551886914 8.79031736282868 8.54668058769184 8.52810688596628 8.59044837522881 8.63217530850147 8.1258262041369 8.58705866094973 8.8052126136389 8.12652802106201 8.73053802765828 0.150691870180486 0.143253654248065 0.14628494123036 0.148013870906682 0.147755625695673 0.153550359165759 0.143468716861664 0.142632249144849 0.157555233892147 0.142163828279236 0.146892095594616 0.146138026627446 0.145337371587942 0.14538453312189 0.159434442202059 0.146753836879914 0.151831939896241 0.168846775255881 0.146160178377435 1 1|0 -|/ 26592481 26593078 26592678.5 26592413 26595042 - gene protein_coding_gene FALSE TRUE AT1G70530.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G40380.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93633.2); similar to Os05g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054549.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.305913458472031 3.49368868764169 0.00510635072299353 1 3.39453465516367 18.2548707486362 0.305913458472031 0.0547259540171776
AT1G34130_at 9.0021894280473 8.7811631914247 8.95735039242788 8.93728798717133 8.3335025987118 7.82791651207267 7.95999911125083 8.200571659008 6.91111281397849 6.88610078052473 7.55231497505017 7.89983999324614 7.27415772395918 7.32030177821149 7.93092129846333 7.35089552476697 7.27056703537827 7.40829091021982 6.63569372425423 0.228817477304468 0.223369788100164 0.228713178244945 0.223981882318603 0.222704117476058 0.244049801033008 0.222189381959060 0.222189381959060 0.249177074205478 0.236426274604038 0.228041370573045 0.222189381959060 0.226026436160144 0.235557745495366 0.222189381959060 0.222189381959060 0.250033714333292 0.243011808352424 0.246005381981420 1 1|0 +|/ 12431720 12432895 12432040.889 12429868 12433165 + gene protein_coding_gene FALSE TRUE AT1G34130.1 STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B); oligosaccharyl transferase Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A), oligosaccharyl transferase [Arabidopsis thaliana] (TAIR:AT5G19690.1); similar to ENSANGP00000020753 [Anopheles gambiae str. PEST] (GB:XP_310665.2); similar to oligosaccharyl transferase, STT3 subunit [Dictyostelium discoideum AX4] (GB:XP_639887.1); similar to oligosaccharyl transferase [Aedes aegypti] (GB:EAT44394.1); contains InterPro domain Oligosaccharyl transferase, STT3 subunit; (InterPro:IPR003674) 0.358987786911329 3.49345681053506 0.00510842363741402 1 3.39417700768942 15.6559377405965 0.358987786911329 0.104228273863355
AT1G14320_at 12.0815738398291 12.1785589034893 11.8898120814355 11.8863038445361 11.7274647694435 11.4370784485446 12.1610456190135 12.2377565576125 11.8483646540602 11.9527488685602 11.7811006980461 11.9909155118704 11.7070788629714 11.6125772203967 12.0729730730501 11.4845969310649 11.4549615391340 11.441782707552 11.8242708548513 0.0644784375245904 0.0644992982410133 0.0621204411921519 0.0638123190723777 0.0621204411921519 0.0663825036949836 0.0621204411921519 0.0661115120394332 0.0668622997321687 0.0625069048670876 0.0622222407373895 0.0621862482922838 0.0621204411921519 0.0653363489076195 0.0630553564237027 0.0626216789025215 0.0683354383276251 0.0660309114252039 0.0644818893495834 1 1|0 +|/ 4888894 4889345 4889073.778 4888209 4889656 + gene protein_coding_gene FALSE TRUE AT1G14320.1|AT1G14320.2 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related Identical to 60S ribosomal protein L10-1 (RPL10A) [Arabidopsis Thaliana] (GB:Q93VT9); similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); similar to 60S ribosomal protein L10 (QM protein homolog) (GB:Q9SPB3); similar to Ribosomal protein L10E [Medicago truncatula] (GB:ABE79479.1); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197)|similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); similar to 60S ribosomal protein L10 (Wilms tumor suppressor homolog) (GB:O22431); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197) -0.305724375904658 -3.49247576407361 0.00511720347897694 1 3.39266378616495 23.7341374799053 -0.305724375904658 0.0546225859568769
AT3G48020_at 3.61225937570548 3.90005489476457 4.28878021111796 4.47390702275804 3.26198301019337 3.89793230721248 2.64769194370221 2.83065715234226 2.74409611426196 3.03238873686212 2.82082992356986 2.95769711117952 3.18473912836058 2.86509701672031 2.82762666957285 2.81926587167783 3.32862197014912 2.11732692097836 2.65919053007982 0.231105164069702 0.233836757785833 0.24036807853299 0.236555000321899 0.231897445646245 0.233733301587438 0.230547190285776 0.225826830260742 0.228127482251885 0.235396216255871 0.226400077269538 0.228900386244215 0.225826830260742 0.229670636040024 0.232228586845536 0.225826830260742 0.227177364451948 0.225826830260742 0.235021343526646 3 3 + 17735593 17735949 17735761.545 17735575 17736183 + gene protein_coding_gene FALSE TRUE AT3G48020.1 similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT5G62860.1); similar to IS10 transposase, putative [Lycopersicon esculentum] (GB:ABI34274.1) 0.393121789491623 3.4916617281337 0.00512450043131377 1 3.39140810423471 6.45267942485489 0.393121789491623 0.128923514662022
AT4G38890_at 8.25531675812165 8.41095215640415 8.06472119543191 8.31151828669049 8.51457938286895 8.27660005553477 8.43507976720333 8.4728429392204 7.49297058691829 7.75897654434827 6.7480072227445 7.08561731338724 7.62988851687085 7.01860325595808 7.09077577993358 7.38392075637801 7.48598812718463 7.11352880681954 7.91700905219229 0.162399728057844 0.162213055643816 0.164994451551331 0.164670662159976 0.164783862407696 0.159857007120815 0.163747464367639 0.162593485587314 0.172299249367128 0.166686213021262 0.170734297525966 0.16282434716673 0.168315808980841 0.164185950166087 0.174655158083581 0.162410424037556 0.170542636518402 0.171509580769127 0.160748441224133 4 4|0 -|/ 18135946 18136576 18136257.444 18135794 18139094 - gene protein_coding_gene FALSE TRUE AT4G38890.1 dihydrouridine synthase family protein similar to FAD binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49640.1); similar to H0613H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66003.1); similar to Os04g0117600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052053.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269) -0.315068673591287 -3.49161347319996 0.00512493332004222 1 3.39133366722991 15.8014646261324 -0.315068673591287 0.0654849912589684
AT1G67120_at 4.81477586971669 4.56156319489162 5.01145366668913 4.47533918151769 4.1129954705889 4.26236138425379 4.66208782208844 4.24847940942727 4.08996915811410 4.08661712505696 3.3613145626649 3.25503932711201 3.33195198402640 3.56953871773576 3.60109956754825 3.9199406609299 4.32491586534671 3.42813004066896 4.64960032959769 0.212368033403076 0.209418501356551 0.215259482270278 0.209418501356551 0.209878021824587 0.209418501356551 0.214341814582714 0.220102276029704 0.209418501356551 0.209422550527044 0.210821520110318 0.210965364433957 0.214741062324547 0.212769049133584 0.211914134422423 0.209418501356551 0.21182977916982 0.209418501356551 0.209418501356551 1 1|0 -|/ 25073520 25074218 25073842 25073225 25099189 - gene protein_coding_gene FALSE TRUE AT1G67120.1 midasin-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Aldo/keto reductase; Sigma-54 factor, interaction re (GB:ABE79009.1); similar to similar to midasin, a large protein with an N-terminal domain, a central AAA domain (with similarity to dynein) composed of 6 tandem AAA protomers, and a C-terminal M-domain containing MIDAS (Metal Ion Dependent Adhesion Site) sequence motifs; Mdn1p [Saccharomyces cerevisiae] [Dictyostelium discoideum] (GB:AAO53165.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG66112.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain ATPase associated with various cellular activities, AAA-5; (InterPro:IPR011704); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078) -0.391296672552048 -3.49077747353712 0.0051324389290808 1 3.39004403866931 8.45582543906854 -0.391296672552048 0.127746403993288
AT4G08790_at 4.63018558826682 4.92570115233161 5.3692952029282 5.3207926055482 5.48281826432601 5.91765615516342 5.05735512906464 5.17205276251487 4.05642198860797 3.92745181991124 4.13857571550352 4.15048858760227 4.82218262576928 4.16516221255086 4.34534108541008 4.60216610543119 4.76147016218583 4.1078972204072 4.83529070196976 0.190951226650965 0.190511369549654 0.19530254205034 0.198122592529834 0.195948629173321 0.202759164932521 0.194150526880797 0.190949114338626 0.197180875558685 0.196814654712096 0.189187183424216 0.199473052682663 0.189187183424216 0.196940414315931 0.190395249379931 0.190381997192013 0.194861232058973 0.197204485014162 0.189187183424216 4 4|0 -|/ 5608656 5609843 5609190.375 5608237 5611212 - gene protein_coding_gene FALSE TRUE AT4G08790.1 nitrilase, putative similar to carbon-nitrogen hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G12040.1); similar to Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Medicago truncatula] (GB:ABE91350.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010) 0.344961263237424 3.48821497385107 0.00515551548051296 1 3.38609068195869 9.56433975811156 0.344961263237424 0.0935010183116018
AT3G53370_at 3.05687949735162 3.38413748719094 3.96025716012009 3.51984424483475 3.49053781072356 3.50458958249634 3.34302462176632 3.55054312842583 3.06487158129561 3.19903085525958 3.47942648407766 3.33548569454899 3.71955021488532 3.47459496608707 3.53176140958147 3.51369816073308 3.58733603631512 3.38446066260218 2.9715780969415 0.192320872960432 0.193532723414556 0.197833550295861 0.198778359524358 0.193568621612978 0.198019523098618 0.194257948996976 0.205758141108729 0.198406829375406 0.19504908268864 0.202305071734579 0.193230588758890 0.191938527453072 0.189569792821056 0.195487124052447 0.189760341316127 0.192239601112085 0.190522971570794 0.194649065013569 3 3|0 -|/ 19799147 19799691 19799285 19798872 19799821 - gene protein_coding_gene FALSE TRUE AT3G53370.1 DNA-binding S1FA family protein Identical to DNA-binding protein S1FA1 (S1FA1) [Arabidopsis Thaliana] (GB:P42551;GB:Q9LFI0); similar to DNA-binding S1FA family protein [Arabidopsis thaliana] (TAIR:AT2G37120.1); similar to DNA-binding protein S1FA (GB:P42552); contains InterPro domain DNA binding protein S1FA; (InterPro:IPR006779) 0.354978354149154 3.48810353950802 0.00515652141521327 1 3.38591875043374 6.7671180489984 0.354978354149154 0.101546776651353
AT3G61880_at 6.93497085914355 7.6304688370356 8.24941539572254 8.79544392978335 8.50877491588617 8.6549214344055 7.81039755191262 8.56418716466746 6.95835245222152 7.79683156865241 7.26156609622642 5.67505923947009 8.37965933844431 7.87417823492523 4.99496838042515 8.28598774755751 9.26459098322744 7.6580477304177 6.88933592483971 0.236426036306843 0.227317274208849 0.232031256857782 0.229390664575476 0.232387662954172 0.236904245050948 0.238374842046372 0.230515880485700 0.240389004578046 0.227317274208849 0.227317274208849 0.230568102702077 0.227317274208849 0.236675762458386 0.246710154835681 0.227317274208849 0.238122158117313 0.231841069719573 0.233904349857462 3 3 - 22917095 22917556 22917288.455 22916843 22918933 - gene protein_coding_gene FALSE TRUE AT3G61880.1 CYP78A9 (CYTOCHROME P450 78A9); oxygen binding Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis. similar to CYP78A8 (cytochrome P450, family 78, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01190.1); similar to CYP78A6 (cytochrome P450, family 78, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46660.1); similar to Cytochrome P450 78A3 (GB:O48927); similar to cytochrome P450 monooxygenase CYP78A29 [Medicago truncatula] (GB:ABC59089.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.513275026345881 3.48721159154432 0.00516458043220631 1 3.38454252741979 15.4631211114402 0.513275026345881 0.202660398781608
AT1G16950_at 1.20877744935891 1.25473423756684 1.35043298163962 1.10715103690578 0.742082609821186 0.93284860217269 1.15485722267297 1.06077896751508 1.85082819026299 1.35811306235106 1.07593186579313 0.866229570834682 1.08064211209874 1.55668186447576 0.935026529987577 1.12248589726157 0.90263683649501 1.47245398680378 1.60108283127151 0.178200197952772 0.181824327953771 0.179226335693185 0.180574682120106 0.186118015451695 0.178727788558215 0.178200197952772 0.187304076313401 0.187114168334976 0.178744952569350 0.184935576538304 0.181783063780207 0.182585983038288 0.178200197952772 0.185620009802274 0.179270522307874 0.182731678358018 0.188998796273928 0.178200197952772 1 1 + 5796129 5796314 5796235.091 5796002 5796552 + gene protein_coding_gene FALSE TRUE AT1G16950.1 unknown protein -0.306744219985019 -3.48685276755898 0.00516782616192637 1 3.38398886281864 2.46638411058862 -0.306744219985019 0.0564859841320737
AT1G22985_at 5.38815529705916 5.35405352353474 5.62852226183978 5.79819275515712 6.09933767860422 6.41570736693662 4.6977253894069 5.09200033640064 4.92930332421287 5.44088592189712 5.28486881417118 4.79953318890908 5.37282099537582 4.98244378431459 4.94513584417593 5.31987439192392 5.28476720938646 4.86058729201902 5.44478553728264 0.198304195203048 0.195292618234670 0.189936938598716 0.199676115830039 0.197988828377406 0.201290430013787 0.196505099277124 0.193729220711675 0.204009914453866 0.193729430355796 0.198438640377798 0.189978241299219 0.192173166866642 0.207906281630961 0.195722893011879 0.190863659073857 0.203228639813116 0.192308704012965 0.195815525549307 1 1 - 8135351 8135756 8135532 8135202 8135909 - gene protein_coding_gene FALSE TRUE AT1G22985.1 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G71130.1); similar to TSI1 [Nicotiana tabacum] (GB:AAC14323.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.343526028968847 3.48633831309032 0.00517248329684209 1 3.38319504033867 10.7481679267001 0.343526028968847 0.0924658648868222
AT3G06340_at 5.08872698666113 5.48357162055756 5.14399550505607 5.55575612235432 5.9052178551936 5.59939269474516 5.22984682302132 5.40837608316698 4.89159587222977 4.5988421024621 5.28168137682611 5.27505092319292 5.70767976959496 5.64649948763489 4.38536657495599 5.64092361288207 5.53793816230408 5.00380721276432 4.93851405556773 0.223093327814628 0.212949900178064 0.212677872644126 0.217192924938228 0.214839762220643 0.222690695965887 0.212425598068529 0.211523202248037 0.217053687194931 0.217129005628514 0.209244665361825 0.210376243589737 0.212221528230326 0.21775451892898 0.216464264336662 0.209966267683070 0.221680803550988 0.214190643289917 0.216058516668676 3 3 - 1920704 1921182 1920972.636 1920213 1923317 - gene protein_coding_gene FALSE TRUE AT3G06340.1|AT3G06340.2 DNAJ heat shock N-terminal domain-containing protein|heat shock protein binding / unfolded protein binding similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18750.1); similar to heat shock protein DnaJ N-terminal domain-containing protein [Musa acuminata] (GB:ABF69988.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.374338939625878 3.48624981933669 0.00517328482707132 1 3.38305848874719 10.4866199947308 0.374338939625878 0.116198290338674
AT1G80520_at 3.40606920390202 3.20842708991822 2.54379485255498 2.82613086153989 2.18370488744881 2.22236007059384 3.19527219773984 3.55112045586806 2.44429498710397 2.58366082257765 2.68529989675521 2.80574783980674 2.48972880123699 2.76093554477777 2.89206140831528 2.91602022125207 2.48920808472693 2.52696125880711 2.38601630707785 0.215671242712178 0.215529339083388 0.219041933956080 0.214672694492779 0.219346822455385 0.219331583899266 0.214289648629589 0.222162912399433 0.212728055890072 0.216160544273588 0.211757725924376 0.216096128321571 0.211811891026079 0.216956758276028 0.214906739788506 0.210156049199703 0.218667607021263 0.221688355958299 0.219885803009401 1 1 + 30281400 30281826 30281590.727 30281373 30281951 + gene protein_coding_gene FALSE TRUE AT1G80520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15760.1); similar to Jp18 [Poncirus trifoliata] (GB:AAN62342.1); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.335901612891356 -3.48609476996032 0.00517468949093146 1 3.38281923580789 5.4756446628855 -0.335901612891356 0.0859888813313262
AT4G01740_at 1.99566270274198 2.01603968946368 2.47329812682034 1.97571972367443 1.96406325867263 1.93203049024664 1.14074399411616 0.862832566754093 2.16863955862497 1.63421697588493 2.00932257794363 2.09039277513056 1.81654165158207 2.11004460561901 1.92283972550784 1.95137112894068 1.79576248100904 2.4817450878367 1.9033792954265 0.207828748533893 0.208172167381592 0.209931768098987 0.214263688040914 0.208576250160336 0.21253692864231 0.211522165953828 0.209554688708432 0.211476839014959 0.211915684389656 0.209035359865836 0.213164760223248 0.210638098212465 0.214943713668935 0.207828748533893 0.207828748533893 0.215050604175405 0.209533819786355 0.219829534885624 4 4 + 754883 755431 755161.818 753422 755456 + gene protein_coding_gene FALSE TRUE AT4G01740.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02180.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01930.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01920.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.351316027900961 3.48574201965819 0.00517788667811626 1 3.38227490723372 3.75721437614874 0.351316027900961 0.0988474467591753
AT3G62620_at 4.07411688671463 3.98214633096849 3.88397032616643 3.49673378177135 3.920692512032 3.98905668171652 4.69754283584299 4.02494570947298 3.13363131588693 3.57971821394952 3.34652316302860 3.18240074479349 3.32577179191052 3.02018994548997 3.12157903226777 2.97419481147789 2.9462835210169 3.1976086281105 4.00387270154194 0.208178837875226 0.204458031465582 0.196922331697807 0.199725430269841 0.194474122964328 0.198667043271214 0.195103788193226 0.198214645366573 0.203860741899549 0.201254782911354 0.198216490686869 0.196632173854103 0.198713624038091 0.200332183198755 0.194474122964328 0.199413553854568 0.200325260193750 0.204105026133238 0.198569323457633 3 3 + 23171927 23172549 23172193.545 23170759 23172830 + gene protein_coding_gene FALSE TRUE AT3G62620.1|AT3G62620.2 sucrose-phosphatase-related contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)| -0.402581535512853 -3.48533966213417 0.00518153596194976 1 3.38165401604377 7.36451381569638 -0.402581535512853 0.135764806044708
AT4G09650_at 11.9595340673509 12.1753476983983 11.4194719627641 11.5075886102328 11.4929692763182 11.3893205258576 12.7840815303890 12.8579743015272 12.6150711806807 12.6474697002313 13.0953250006349 13.2830046553480 12.7991567020527 12.9083437700476 13.3886640985699 12.9660268031695 12.3259618920768 12.9552898556600 12.4483175874224 0.0680889234719059 0.0680913910384267 0.068526334705633 0.0696045561101777 0.0659622838999978 0.0715931067023425 0.0683506208762726 0.0713109117769472 0.0732679579552758 0.068546495322505 0.0692438792101932 0.066276425978478 0.0726857558751424 0.074246182374334 0.0669192062941159 0.0659622838999978 0.0672352073704997 0.0699336536857035 0.0699865907785256 4 4 + 6100919 6101456 6101132.273 6100740 6101705 + gene protein_coding_gene FALSE TRUE AT4G09650.1 ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative similar to ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative [Arabidopsis thaliana] (TAIR:AT5G13450.1); similar to ATP synthase delta chain, chloroplast precursor (GB:P32980); contains InterPro domain ATPase, F1 complex, OSCP/delta subunit; (InterPro:IPR000711) -0.298480682269880 -3.48327613773775 0.00520029317123336 1 3.37846949305256 24.7160398732580 -0.298480682269880 0.0459632900412511
AT1G15440_at 4.86515840255745 4.95420047917266 4.48752491384041 4.46935720422556 4.33953683844528 3.89072219964567 4.89513941518514 4.52107144978696 3.07551169914533 4.24460443216033 3.36477595363039 3.91945554523818 3.65737876465518 3.44584465209995 3.73171529044304 4.0817894557352 3.38086310460714 3.27973067539271 4.09878529838874 0.277309464596038 0.287984003658731 0.286052870961669 0.289845647212071 0.274205057426499 0.276623665348632 0.276701366366475 0.287381434263174 0.284564169969447 0.277787064385488 0.276743991765388 0.275059309324151 0.274205057426499 0.283155161675419 0.274205057426499 0.274205057426499 0.282914079267991 0.277866110804636 0.275107542570773 1 1 - 5306164 5306893 5306539 5306056 5309509 - gene protein_coding_gene FALSE TRUE AT1G15440.1|AT1G15440.2 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to PREDICTED: PWP2 periodic tryptophan protein homolog isoform 4 [Pan troglodytes] (GB:XP_001148790.1); similar to 'unknown protein, WD domain, G-beta repeat, PF00400' [Oryza sativa (japonica cultivar-group)] (GB:AAT69655.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44262.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045); contains InterPro domain Periodic tryptophan protein-associated region; (InterPro:IPR007190)|similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to periodic tryptophan protein 2 [Asper (GB:XP_001217912.1); similar to 'unknown protein, WD domain, G-beta repeat, PF00400' [Oryza sativa (japonica cultivar-group)] (GB:AAT69655.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44262.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Periodic tryptophan protein-associated region; (InterPro:IPR007190) -0.355356721987949 -3.48203170601725 0.0052116386080942 1 3.37654884446353 8.2598361912524 -0.355356721987949 0.102324923750803
AT2G18730_at 7.37839872998686 7.36512271560164 7.04333297485629 7.41569114682749 7.53317913560401 6.89520831785705 6.95159949264336 6.70828877336497 6.80047924930289 5.94514303816896 7.11825282800001 6.7851013279752 6.99706762428646 7.25802059036151 6.96841047897897 7.18988347375142 6.62847294895768 6.6158687119988 6.0501822897514 0.200204136270984 0.19799414395589 0.201916057981357 0.196324716846288 0.192858952333533 0.212733060803436 0.196500596683603 0.202700521346305 0.200687729748838 0.193320273268257 0.198560360964081 0.196166381509660 0.198360629973914 0.205257778508967 0.197899945564397 0.204634369775894 0.202909754641187 0.201566216735729 0.203246505808754 2 2|0 +|/ 8127737 8128731 8128286.6 8125912 8129007 + gene protein_coding_gene FALSE TRUE AT2G18730.1 diacylglycerol kinase, putative similar to ATDGK7 (DIACYLGLYCEROL KINASE 7), diacylglycerol kinase [Arabidopsis thaliana] (TAIR:AT4G30340.1); similar to diacylglycerol kinase [Arabidopsis thaliana] (TAIR:AT5G57690.1); similar to Diacylglycerol kinase accessory re (GB:ABE81286.1); contains InterPro domain Diacylglycerol kinase accessory region; (InterPro:IPR000756); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) 0.400433510759004 3.48176913639868 0.0052140356907135 1 3.37614357821334 13.7665541310660 0.400433510759004 0.134608691259612
AT2G41180_at 7.66932108584943 7.75665454905479 8.54744198732696 8.603248272742 8.04531411120142 7.83667210902603 7.16788388997406 7.52466879601836 7.1266066274647 6.60126495938723 6.4320525379655 7.46779152302503 6.54201074471505 6.67546972114928 6.03937711320977 6.70256863692551 6.47147157105292 7.12110643559927 6.56940758640709 0.203640141791223 0.197615551337416 0.208824673518985 0.213595383824205 0.203488840142544 0.205956040143427 0.203464785132518 0.211733670941574 0.205699169069749 0.197992408592574 0.216391277123540 0.206285388143223 0.212070696267774 0.221329334093421 0.205282453839945 0.200185549943009 0.208441965397403 0.206165275169348 0.197615551337416 2 2 + 17172322 17172688 17172525.818 17172269 17173103 + gene protein_coding_gene FALSE TRUE AT2G41180.1 sigA-binding protein-related similar to SIB1 (SIGMA FACTOR BINDING PROTEIN 1), binding [Arabidopsis thaliana] (TAIR:AT3G56710.1); similar to VQ [Medicago truncatula] (GB:ABE93011.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.322129175442780 3.48069741303703 0.0052238315451426 1 3.37448934942483 14.6175209800866 0.322129175442780 0.0737400582937348
AT1G64640_at 3.20417852146550 3.19423277612446 1.68214958849046 2.01391441795729 1.95765973228680 2.39837124111811 3.19544041801381 3.75407442978325 3.10391002419535 3.18391610169481 4.74064155265611 5.22769467997052 3.940780789276 4.15610921983168 5.50412035792726 3.38537472228295 2.37075206205400 4.21294359452365 4.73032930746831 0.242236293344533 0.242135142791613 0.254786078037042 0.240568008297818 0.236689421273281 0.239568819491655 0.247925189639125 0.239686866010391 0.247026647626896 0.236831243991924 0.243685937269586 0.259417521893705 0.237820030878362 0.236689421273281 0.247793682340618 0.236689421273281 0.238073860132549 0.242522658582691 0.237535546864678 1 1|0 -|/ 24026222 24026681 24026470.5 24025948 24026859 - gene protein_coding_gene FALSE TRUE AT1G64640.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G18590.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17030.1); similar to Os03g0115000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048748.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.402187073427239 -3.48049735783683 0.00522566219813411 1 3.37418054833176 6.60751294070567 -0.402187073427239 0.135874408251555
AT1G77200_at 0.167587065706664 0.58298579461084 0.393105065337626 0.449471038394857 0.81809627106393 0.641104391315882 0.604441593526137 0.359781199435669 0.329764001559307 -0.0581391321819225 0.578860931878076 0.363268237141794 0.990526370124059 1.03371152965721 0.407661813093283 0.690699212151253 0.330199467976065 0.818034975448269 0.0879516003878486 0.215110175106763 0.219531819422340 0.215950696419949 0.221503895769840 0.215616243603296 0.222197226496541 0.215110175106763 0.220647496338585 0.218356170326735 0.230341614690117 0.219478164574918 0.217216328376373 0.222832986151849 0.231979831168490 0.225418611738559 0.225866558731285 0.240180405940508 0.224212400867226 0.223197522387178 1 1 - 29009277 29009772 29009517 29009251 29009985 - gene protein_coding_gene FALSE TRUE AT1G77200.1 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor TINY, putative [Arabidopsis thaliana] (TAIR:AT4G32800.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE81266.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.33925338606846 3.4798186460253 0.00523187782271097 1 3.37313287591450 0.887811122643365 0.33925338606846 0.0894071576691686
AT1G57560_at 1.11458170676670 1.45290235745774 2.97983044026733 2.68319228822664 1.19832244261153 0.655286497101649 0.716321250753075 0.413166717585848 1.14866675213889 1.00367441503533 0.866332630337396 1.36737200787183 0.909522292039801 0.732801641293423 0.393459904320047 1.07148111131815 0.881665371703912 1.06734217470651 1.06173536590966 0.226989354787728 0.231540906401095 0.228687182842178 0.228390290919005 0.220899846979891 0.225548191554314 0.225601331443700 0.226958304870128 0.229470744302702 0.220899846979891 0.220899846979891 0.222074944100054 0.228440295544644 0.221551257021703 0.221473413021224 0.226209586221112 0.222449823548072 0.225234303847764 0.223251698321502 1 1 + 21321104 21321562 21321324.273 21320493 21321729 + gene protein_coding_gene FALSE TRUE AT1G57560.1 AtMYB50 (myb domain protein 50); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB61 (myb domain protein 61), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G09540.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE81808.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.397401603124267 3.47833613828561 0.00524548100148508 1 3.37084430494357 2.3930034556264 0.397401603124267 0.132840818527958
AT1G31310_at 1.43253744230745 1.33358031571214 1.87005042912116 1.80866434006520 1.53708738779393 1.21845183328128 1.24352988004267 1.62901672539576 1.4107463900616 0.947925358673412 1.51688301700948 2.02766003310810 1.9531358531765 1.82163126427045 1.74791749347715 1.45815986571058 2.30889675068830 1.34450683494995 1.52448772927364 0.200941997134800 0.201324707137629 0.192777880757489 0.200230115567140 0.193779288048909 0.193479416958300 0.192785176735636 0.202423198658010 0.204863067376977 0.196817552993363 0.192103845314364 0.193835739689007 0.198407782227337 0.198431038191359 0.201412320294617 0.19132378923111 0.195680674960336 0.19132378923111 0.194856684886642 1 1 - 11198546 11199432 11198903.545 11198334 11200122 - gene protein_coding_gene FALSE TRUE AT1G31310.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT2G35640.1); similar to shattering protein [Oryza nivara] (GB:ABD35825.1); similar to OSJNBa0043A12.37 [Oryza sativa (japonica cultivar-group)] (GB:CAE02832.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.338429901540075 3.47788100569215 0.00524966448368549 1 3.37014166989744 3.04248248507413 0.338429901540075 0.088864789729295
AT3G09560_at 6.33285368141582 6.55609718812781 6.17346197959041 6.26060772747523 6.58560760714536 5.96165010725388 7.63206134161013 7.32826411277454 5.14330175178002 5.67958632395126 5.27407610613143 5.44819574637881 5.22388693070234 5.57726543106191 4.45300833717594 6.16263519715892 5.33373522896895 5.05855073185981 5.30845924791145 0.269054226691894 0.264879540930844 0.265915934498243 0.263221907575782 0.263930313827501 0.262559536177977 0.267454358827284 0.261652669889322 0.272096642183855 0.266279609867023 0.263628164514303 0.266972089203102 0.259408073037936 0.262816911235916 0.265377855615385 0.258063042850418 0.268653623090005 0.268028901991186 0.258180883313557 3 3 - 2935125 2936237 2935748.091 2934622 2939461 - gene protein_coding_gene FALSE TRUE AT3G09560.1|AT3G09560.2 lipin family protein similar to lipin family protein [Arabidopsis thaliana] (TAIR:AT5G42870.1); similar to lipin, N-terminal conserved re (GB:ABA94690.1); contains InterPro domain LNS2, Lipin/Ned1/Smp2; (InterPro:IPR013209); contains InterPro domain Lipin, N-terminal conserved region; (InterPro:IPR007651) -0.388841893241834 -3.4778327600018 0.00525010814859138 1 3.37006718696927 11.9505929622878 -0.388841893241834 0.127056512911278
AT4G11090_at 6.13721024730711 6.4734829519421 5.64378958139887 5.57746488225994 6.25291519078098 6.09022482739534 6.7442558536535 6.8196296075022 5.75669468779843 5.31644063955592 5.48764885153772 5.46788300450513 5.47776481807687 5.7127512452389 5.49167383494561 5.3423549477648 5.1463059099968 5.58008866949671 5.24982382914112 0.218737216499644 0.223896624004539 0.223006185860506 0.225253093125855 0.212403725786888 0.227357985487228 0.213016462318846 0.217625576235407 0.215953064280472 0.216395235192619 0.212449343836682 0.211910694095215 0.217650046097408 0.215856444604805 0.217765867089420 0.213022229712590 0.214717017188718 0.211489522635560 0.212834577816811 4 4 - 6764687 6765192 6764975.182 6764533 6766264 - gene protein_coding_gene FALSE TRUE AT4G11090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23790.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); similar to Os06g0524400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057758.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.315111759972809 -3.47699501787334 0.00525781812309201 1 3.36877382604551 11.6695192906269 -0.315111759972809 0.0669405447704895
AT3G59660_at 8.16633647397578 8.13763034938659 8.33875465280107 8.13546304402742 8.44497111198892 7.73645048297032 6.06337742118297 5.73285835864739 6.9104906828933 6.57516762116628 6.69366342838072 6.65542765996521 6.0735088438668 6.5619107791867 6.05058675937885 6.83102598665247 6.13141669967567 6.16466360538335 6.66994791006656 0.199868809290462 0.201237932728265 0.203364738509301 0.199820518334470 0.197788529375011 0.205118208079523 0.207368693366916 0.194696515253441 0.206992703662533 0.195927133998667 0.197373413537766 0.194873014723579 0.196925400155216 0.206907535691180 0.196884148350102 0.197878764664754 0.201874369930276 0.197682474349011 0.197132571545419 3 3|0 -|/ 22045425 22046470 22045942.6 22045148 22049635 - gene protein_coding_gene FALSE TRUE AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein similar to VAD1 (VASCULAR ASSOCIATED DEATH1) [Arabidopsis thaliana] (TAIR:AT1G02120.1); similar to Os09g0516900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063676.1); similar to no pollen; Osnop [Oryza sativa (japonica cultivar-group)] (GB:AAU09489.1); similar to Os02g0605400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047370.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain GRAM; (InterPro:IPR004182) 0.40779961887563 3.47653738861378 0.00526203472119255 1 3.3680672816208 14.1513856743825 0.40779961887563 0.139885111906023
AT1G07130_at 1.70202978472385 1.32294750303315 1.58077004318899 1.46727994621957 1.83426126633555 1.65961297425194 1.18245314548868 0.930466086883542 1.61089202422656 1.18769144448319 1.48279003835524 1.35336729567357 1.46412663835209 1.94334287411531 1.73354756645751 1.73246579951607 2.18210364181694 1.55765076289346 1.28411578580572 0.204956636375038 0.195372350276970 0.20613994658524 0.206167430045879 0.216735371407294 0.212751150572088 0.196679821342235 0.192642346429299 0.197290535165404 0.203523499871229 0.195929392685572 0.197144152658238 0.198188091904694 0.193459637683668 0.215209356729884 0.196637830236861 0.199010244957307 0.196596030262 0.207658468348783 1 1 + 2187946 2188334 2188132 2187775 2188732 + gene protein_coding_gene FALSE TRUE AT1G07130.1 OB-fold nucleic acid binding domain-containing protein similar to Os03g0366900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050181.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51547.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) 0.335640751554536 3.47580248592827 0.00526881338335178 1 3.36693260913652 2.981014633092 0.335640751554536 0.0866281436327238
AT3G50560_at 3.88378944508092 4.28004968752762 3.95609656722442 4.3005427850662 4.81923782587258 5.1561561025677 7.00220483172242 7.31281700205758 5.04081492481615 6.27882426824977 6.3151052757664 5.57919145014632 6.30019236731127 6.53282807680644 5.64749021928551 7.1976708187495 5.95529053447086 5.62098559626399 6.2013600843474 0.218182631216681 0.210131929285308 0.214585462346808 0.208606072472110 0.208964157898906 0.220025382190197 0.223107143713986 0.217824881229186 0.239049401835745 0.213369440571475 0.216486491970768 0.209187902248783 0.213445099237704 0.212299966886556 0.22704423485689 0.211901446537561 0.230098672401814 0.214926865846141 0.207504609612193 3 3|0 -|/ 18772232 18773633 18773073.778 18772069 18774997 - gene protein_coding_gene FALSE TRUE AT3G50560.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G06060.1); similar to Os08g0476300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062040.1); similar to short-chain dehydrogenase/reductase SDR [Rubrobacter xylanophilus DSM 9941] (GB:YP_645735.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.37922286076774 -3.47446548186594 0.00528116876295705 1 3.36486818255525 11.0808254733005 -0.37922286076774 0.120600505457768
ATCG00530_at 11.3064084408198 11.7825926998764 11.8059156684136 11.6405309751209 11.6356726525153 11.4430129325694 11.7196938353616 12.0877824182273 12.1243047931061 12.1700980032282 13.1744432322891 13.3760353556072 13.0221892834444 12.9521196554756 12.8557244680511 12.9590400790162 12.5412345346457 12.3365840313400 11.9213745537339 0.121469047545273 0.112601372704684 0.114733407486536 0.112891163888374 0.111592410958339 0.118100320243606 0.113957223966750 0.110833439515870 0.124804275281189 0.113635740519014 0.114622731604951 0.113362536245712 0.117974499119273 0.113372609516893 0.113323905395451 0.113565529960551 0.123086465223376 0.115151803743997 0.113405499929027 C C + 60930 61379 61177.909 60741 61430 + gene protein_coding_gene FALSE TRUE ATCG00530.1 Identical to Chloroplast envelope membrane protein (cemA) [Arabidopsis Thaliana] (GB:P56783); similar to proton extrusion protein-related [Arabidopsis thaliana] (TAIR:AT4G31040.1); similar to chloroplast envelope membrane protein [Gossypium hirsutum] (GB:YP_538947.1); contains InterPro domain CemA; (InterPro:IPR004282) 0.368704627605554 3.47404991125336 0.00528501514606437 1 3.36422648035106 24.1647497595329 0.368704627605554 0.113044641757562
AT1G15330_at 1.36144313978814 1.10685723070243 1.81928808726227 1.50697451705182 1.31791637064156 1.85580310698684 0.934568662008956 1.06372352688691 1.00192608287436 0.902453738059396 1.51917225477855 1.01656386150139 1.52562444558203 0.994355050248134 1.53524070180034 1.30394398299366 1.18819010604997 1.00100989909195 1.14541100058126 0.223842875216688 0.217955954498484 0.22201098043531 0.219969690222975 0.220168355630526 0.225629098067436 0.216366279923183 0.212198835596631 0.222468993994817 0.222784820501480 0.215404027241089 0.212878843632548 0.212826526221302 0.229684595722423 0.223330242468197 0.215595300049836 0.225067765197995 0.233252014764205 0.225731241282796 1 1 + 5274874 5275459 5275107.545 5274341 5275597 + gene protein_coding_gene FALSE TRUE AT1G15330.1 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G80090.1); similar to SNF4b [Medicago truncatula] (GB:AAO61675.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.376131488944878 3.47402867511258 0.00528521177792319 1 3.36419368821002 2.50937656929649 0.376131488944878 0.118432734317651
AT1G05180_at 8.42982935708178 8.66526870583177 8.28281272281395 8.183035997119 8.5201107935706 8.10169992144733 8.19963632955401 8.05429069440023 8.22949554705011 7.31008826087563 7.03363066560376 6.99722379719285 6.48085036432525 7.20914615973543 6.84447481370154 7.25430460244824 7.41954711992245 7.59742515819594 7.6037129770398 0.173596670766215 0.173596670766215 0.180536671087112 0.180614493947924 0.17873038320413 0.179906604032617 0.182914011886442 0.176509570126004 0.178326151539713 0.177353299445220 0.179583729468195 0.177721998685712 0.181598996392369 0.18458472209184 0.184060745973304 0.180959859454347 0.180254199936092 0.176152655578360 0.173596670766215 1 1|0 -|/ 1498389 1499501 1498704.4 1498113 1501823 - gene protein_coding_gene FALSE TRUE AT1G05180.1|AT1G05180.2|AT1G05180.3 AXR1 (AUXIN RESISTANT 1); small protein activating enzyme Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. Identical to NEDD8-activating enzyme E1 regulatory subunit (Auxin-resistance protein AXR1) (AXR1) [Arabidopsis Thaliana] (GB:P42744); similar to auxin-resistance protein, putative [Arabidopsis thaliana] (TAIR:AT2G32410.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); similar to putative auxin-resistance protein [Populus trichocarpa] (GB:ABG37639.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594)|Identical to NEDD8-activating enzyme E1 regulatory subunit (Auxin-resistance protein AXR1) (AXR1) [Arabidopsis Thaliana] (GB:P42744); similar to auxin-resistance protein, putative [Arabidopsis thaliana] (TAIR:AT2G32410.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036)|similar to auxin-resistance protein, putative [Arabidopsis thaliana] (TAIR:AT2G32410.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036) -0.337599169746862 -3.47360603854719 0.00528912666029023 1 3.36354105855023 15.7140893636253 -0.337599169746862 0.0885086371027143
AT1G48410_at 10.0093165855361 9.80819516671055 10.0708405875655 10.0785718575698 10.5772012302854 10.4064277662279 9.96557148649643 9.9316071301798 10.0292689319574 9.83031527637141 10.2531054824753 10.1798524366528 10.2534057217884 10.1329514788217 10.0825787704606 10.1193258840921 10.0995315871660 10.2787047086008 9.94287470198936 0.0789447171617186 0.0784872633749306 0.0812899560059786 0.0818431581741145 0.0800533679050253 0.0781278238266519 0.0818128949540306 0.0816795391071496 0.0841492611619507 0.082352126874229 0.0828283249181748 0.0780236088262122 0.0796533892524289 0.079044150854848 0.0774863256723122 0.0764398841946915 0.0839808003400603 0.0819526566126086 0.081326954364783 1 0|1 /|- 17889953 17890797 17890409.375 17889766 17896254 - gene protein_coding_gene FALSE TRUE AT1G48410.1|AT1G48410.2 AGO1 (ARGONAUTE 1) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. Identical to Protein argonaute (AGO1) [Arabidopsis Thaliana] (GB:O04379;GB:Q9LP83); similar to argonaute protein, putative / AGO, putative [Arabidopsis thaliana] (TAIR:AT2G27880.1); similar to ZLL (ZWILLE) [Arabidopsis thaliana] (TAIR:AT5G43810.1); similar to AGO1-1 [Nicotiana benthamiana] (GB:ABC61502.1); similar to AGO1 homologous protein [Oryza sativa (japonica cultivar-group)] (GB:BAB96814.1); similar to AGO1-2 [Nicotiana benthamiana] (GB:ABC61503.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) 0.297683403416306 3.47323384408968 0.00529257676249828 1 3.36296630773708 20.1605089657531 0.297683403416306 0.0460555495232122
AT3G25800_at 9.33885341770306 9.31640369911825 9.5916473645326 9.65113248290482 9.5307530084591 9.50322288108535 9.22441880185871 9.20369905196086 8.59191443274283 8.65192449412158 8.8429789923364 8.88755723475339 8.91596869233611 8.8778696213088 8.92566192375363 8.97306575855511 9.07996225473517 8.88791441201218 8.72752714278108 0.0983607260214496 0.0957684050020377 0.0985963315844977 0.0938152973713537 0.0953211192493537 0.0963860140657279 0.094090416170257 0.0994883455486102 0.114068690886676 0.0930804149957161 0.101387979492066 0.0974738928268839 0.0969270235141046 0.0965216740997038 0.100290000182709 0.0965313926273647 0.100994008075663 0.098539277780144 0.0956453754492871 3 3 - 9424139 9424990 9424575.909 9423825 9427281 - gene protein_coding_gene FALSE TRUE AT3G25800.1|AT3G25800.2 PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A); protein phosphatase type 2A regulator one of three genes encoding the protein phosphatase 2A regulatory subunit Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (PP2A, subunit A, beta isoform) (AtA beta) (PP2AA2) [Arabidopsis Thaliana] (GB:Q38950;GB:Q9LRZ9); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to protein phosphatase 2A [Nicotiana tabacum] (GB:CAA66487.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357)|Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (PP2A, subunit A, beta isoform) (AtA beta) (PP2AA2) [Arabidopsis Thaliana] (GB:Q38950;GB:Q9LRZ9); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.2); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to protein phosphatase 2A [Nicotiana tabacum] (GB:CAA66487.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.282547764796965 3.47170292749722 0.00530679209320791 1 3.36060210330031 18.2105135306723 0.282547764796965 0.0125147183031318
AT1G68360_at 1.69149754118814 2.27003800951197 2.98548804597338 2.62345300080803 2.43033070421994 2.63501474462729 1.71744377943731 2.44012950303423 1.96011073014453 1.94998908888260 2.11920687695274 1.83957850919470 1.80608420513671 2.0396041732645 2.13291855929140 3.07790297044276 2.35065123036230 2.23041793553706 1.8181943123477 0.183727781512223 0.187368781696104 0.191639704386788 0.191924617125576 0.185602976692949 0.19173030702762 0.185768115051298 0.183727781512223 0.187895895488410 0.183727781512223 0.188740504794896 0.187379907489181 0.187959763552471 0.186910874260239 0.184317920955888 0.192340220813971 0.183727781512223 0.184477024907358 0.183727781512223 1 1 - 25625353 25625886 25625591.182 25625341 25626075 - gene protein_coding_gene FALSE TRUE AT1G68360.1 zinc finger protein-related similar to ZFP6 (ZINC FINGER PROTEIN 6), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G67030.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB64610.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.464454298006035 3.47101679463589 0.00531317589529882 1 3.35954243629369 4.40366288342389 0.464454298006035 0.175626924495698
AT4G02340_at 9.39520755695062 9.247235657496 9.33548335263318 9.35705290582506 9.83485984457779 9.52763893992514 9.31961201970045 9.21432684574394 8.52919172093548 8.56880763096076 8.65958852363442 8.87497713471745 8.96484598263447 9.00615070080806 8.56586946724553 8.82032487129978 9.0100314920283 9.02437086339384 8.29913494514607 0.133199605094536 0.134166209130637 0.137480334848615 0.140028587956646 0.137200115257854 0.137188658147541 0.130453131398818 0.139310531296376 0.142607061923328 0.136213232032589 0.136955747180285 0.134094762791219 0.137044902448874 0.131376349217813 0.146117068287965 0.135122203427702 0.142798620850380 0.130145383152507 0.141966794872368 4 4|0 +|/ 1036138 1037372 1036982.9 1035683 1037615 + gene protein_coding_gene FALSE TRUE AT4G02340.1 epoxide hydrolase, putative similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.309860843945169 3.47012395317714 0.00532149472510047 1 3.35816346497365 18.0696677962654 0.309860843945169 0.0618729309162294
AT1G55870_at 2.11071981337539 2.8879123738395 2.78097720758991 3.23677101458107 3.45755951851976 3.21105269538023 2.64086946346937 3.00256063634955 2.20084301717112 2.02181100409176 2.44398245612682 2.97666111877206 2.48372711251215 2.48598172726122 2.46822793503378 2.60089115691475 2.46902616261904 2.41833895034196 2.17760093271561 0.241847197280061 0.239563487006497 0.24376571218899 0.239079102427404 0.238922216062218 0.242184608379035 0.24288506238774 0.236472087282017 0.243720560448772 0.247134959003483 0.243390841323252 0.237394096553296 0.236472087282017 0.242794068707427 0.246673275047524 0.236472087282017 0.246758335816128 0.244168708572637 0.240055977316614 1 1 + 20901405 20901891 20901661.1 20899251 20902087 + gene protein_coding_gene FALSE TRUE AT1G55870.1|AT1G55870.2 AHG2/ATPARN; ribonuclease|AHG2/ATPARN Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA. Identical to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate- specific ribonuclease) (AtPARN) (PARN) [Arabidopsis Thaliana] (GB:Q9LG26); similar to CAF1 family ribonuclease [Arabidopsis thaliana] (TAIR:AT3G25430.1); similar to Poly(A)-specific ribonuclease PARN (Polyadenylate-specific ribonuclease) (GB:Q7ZU92); similar to OSIGBa0115M15.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66773.1); similar to poly(A)-specific ribonuclease [Danio rerio] (GB:AAQ97826.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941)|Identical to Poly(A)-specific ribonuclease PARN (EC 3.1.13.4) (Polyadenylate- specific ribonuclease) (AtPARN) (PARN) [Arabidopsis Thaliana] (GB:Q9LG26); similar to CAF1 family ribonuclease [Arabidopsis thaliana] (TAIR:AT3G25430.1); similar to Poly(A)-specific ribonuclease PARN (Polyadenylate-specific ribonuclease) (GB:Q7ZU92); similar to OSIGBa0128P10.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67368.1); similar to OSIGBa0115M15.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66773.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) 0.460505398357091 3.46998414328834 0.00532279857934791 1 3.35794752569653 5.25443928810837 0.460505398357091 0.173345358201552
AT4G28540_at 5.31115620928119 5.45389124002703 4.87997721953682 5.21355840428447 5.36710382268962 5.27319202686904 4.48060034844644 4.64191994613894 4.85638066181546 4.05481517673239 4.87750259726206 5.00690804035984 4.6801742250396 4.77899823839639 4.7542399270327 4.54878568179416 4.80538319779321 4.83443403388647 4.1738396691965 0.252943244467562 0.259510046821587 0.260820084084646 0.246571610336523 0.247227800804234 0.259253210082529 0.260836645906313 0.250098110363337 0.275456817257360 0.258664474238352 0.246571610336523 0.253388116586501 0.249106008013893 0.249294725398987 0.258234401917398 0.251024162107510 0.265630942385619 0.250942020092677 0.251927954624395 4 4 + 14109633 14110491 14110152.545 14106979 14110712 + gene protein_coding_gene FALSE TRUE AT4G28540.1 CKL6/PAPK1 (Casein Kinase I-like 6); casein kinase I/ kinase similar to CKL7 (Casein Kinase I-like 7), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G44100.1); similar to ADK1 (DUAL SPECIFICITY KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G03930.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.317845336242843 3.46817544638689 0.00533969591211917 1 3.3551537998117 9.6514157747977 0.317845336242843 0.0706124811702671
AT4G23680_at 2.39869100131717 2.46565180364713 2.09324484563592 1.97317530729946 3.60051973814463 3.65986536945825 3.08367613176086 2.97387747995008 2.61069361355498 2.5956262972266 2.17664546887545 1.77403523949205 2.82985074561610 2.11938259832979 2.20306751748176 2.13410516029828 1.67357210394363 2.47986114664968 3.35296386400200 0.24811107532172 0.236614064438656 0.243932874533628 0.244773767247857 0.270029661532194 0.278444525805446 0.238950324405084 0.2595980657746 0.246039544179167 0.234670448222207 0.23819986008847 0.243106545550021 0.233151093636331 0.244763673640880 0.244522324772931 0.233437609370040 0.244197256096916 0.236229883661887 0.238035892490006 4 4|0 -|/ 12336434 12337376 12336688 12336196 12337492 - gene protein_coding_gene FALSE TRUE AT4G23680.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT4G23670.1); similar to major latex protein homologue [Datisca glomerata] (GB:CAD33533.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.289026191521464 -3.46800864734489 0.00534125696383037 1 3.35489614627884 5.29454250424187 -0.289026191521464 0.0321332692938210
AT4G24280_at 9.19570244239757 9.34034104074065 9.18040312519704 9.16704025647443 9.20539511665443 8.9163012795665 9.96183018818667 9.69789090158814 9.78729241782006 10.2943104285483 9.71017659446048 9.91211397450053 9.81543536521197 9.75780434478173 10.1933889578118 10.0800714392557 9.59315967897234 9.67517581147401 10.0661965381664 0.0963017069131142 0.0930982632536403 0.0974764585600529 0.099389134471432 0.0955851068437235 0.0984338970832353 0.103274926976134 0.0956182786001634 0.104925710258513 0.0985053986494556 0.100460090516502 0.0955918298180991 0.0930982632536403 0.100469835609124 0.102708634446834 0.0995291815442796 0.102876825687974 0.0981713881658166 0.0956108627288532 4 4 + 12592743 12593409 12593180.182 12589998 12593640 + gene protein_coding_gene FALSE TRUE AT4G24280.1 CPHSC70-1 (chloroplast heat shock protein 70-1); ATP binding / unfolded protein binding similar to MTHSC70-1 (mitochondrial heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G37910.1); similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE79560.1); similar to heat shock protein 70 [Cucumis sativus] (GB:CAA52149.1); similar to heat shock 70 protein [Spinacia oleracea] (GB:AAB91471.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Chaperone DnaK; (InterPro:IPR012725); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.319378444729082 -3.46712363032012 0.00534954756872171 1 3.35352902441695 19.2788291600108 -0.319378444729082 0.0722569194801548
AT1G22640_at 7.33098487752414 7.18340435221179 7.07817950647091 7.43254779532396 8.47521672328751 8.15753632437765 7.34555136092604 7.1985060205363 6.83306321004462 7.1088933684836 7.56204585403944 7.35430342459621 7.5296171509861 7.40046453251804 6.56141039467718 7.12162626149105 7.8792186638417 7.13254184034466 7.5432415351036 0.179201109184685 0.165399550984817 0.173786202867531 0.165399550984817 0.173591751580712 0.183438676330065 0.165399550984817 0.165399550984817 0.184867795568877 0.176891109833356 0.168775300842788 0.175472780167379 0.17624486069305 0.176326258983824 0.175488644487452 0.166164172639805 0.167836148166603 0.176682454470713 0.176885600833141 1 1 + 8006593 8007164 8006975.182 8006184 8007417 + gene protein_coding_gene FALSE TRUE AT1G22640.1 MYB3 (myb domain protein 3); DNA binding / transcription factor MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression similar to ATMYB6 (myb domain protein 6, myb domain protein 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G09460.1); similar to MYB1 [Gossypium hirsutum] (GB:AAA33067.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.338589622666648 3.46702779503389 0.00535044612046031 1 3.35338097959820 14.7649339800102 0.338589622666648 0.0899051979162558
AT1G69850_at 8.47644543053096 8.87853635584214 8.91514842160317 8.6115038945949 9.10017662129454 9.28815348532798 8.0259609614725 8.54891774836191 8.23488581777526 8.20189802139059 8.11742860069325 8.27810662256121 8.86000733177675 8.24438869969727 7.8975754255803 8.68318604216453 8.99592555468268 8.59395603901621 8.07880870347399 0.160213815021493 0.157702324583145 0.159062682854342 0.162133443660626 0.155143764727675 0.157277638171350 0.154484340010541 0.162344892242613 0.176656716399019 0.157066303845823 0.164003833554288 0.155400215283422 0.153296190931686 0.166199224082698 0.168218575114083 0.153296190931686 0.172572770637987 0.153296190931686 0.162567454727491 1 1 - 26300641 26301169 26300868.182 26300339 26304135 - gene protein_coding_gene FALSE TRUE AT1G69850.1 ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thaliana] (TAIR:AT1G27040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G62730.1); similar to Os06g0581000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057937.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE79510.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.391619045147423 3.46675679291131 0.00535298787506663 1 3.35296233546676 17.0459483500792 0.391619045147423 0.129813632976318
AT3G19370_at 3.40537481598254 3.61037923575326 3.55852809421927 3.53894670490200 2.78980589327199 2.9187695827143 4.96549442096778 4.88735423174184 4.03981836369360 5.86986679297962 6.03499144037748 6.36683205540695 5.54958527960724 5.49327876450998 6.07336053326545 6.02937460966062 4.47583280696265 5.35357688857413 5.83311850000287 0.301871984211832 0.293944520522455 0.293944520522455 0.305231488993603 0.297407679318424 0.312603802312088 0.293944520522455 0.295080196648681 0.307996075979998 0.295235835305022 0.297481739281242 0.299236553642304 0.293944520522455 0.293944520522455 0.29828594195685 0.294672154389976 0.311052971433084 0.302424911728127 0.293944520522455 3 3|0 +|/ 6712832 6713476 6713180.2 6710761 6713656 + gene protein_coding_gene FALSE TRUE AT3G19370.1 similar to transport protein-related [Arabidopsis thaliana] (TAIR:AT2G23360.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82280.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) -0.295567639465468 -3.46331777852084 0.00538535057034729 1 3.3476491839356 9.16918425553792 -0.295567639465468 0.0441705767024032
AT3G28580_at 2.62549375145449 2.46366107229597 4.24002657870404 3.74599227210405 2.73305910525033 2.30970611792565 1.83110487961435 1.78012570989769 2.81907656815361 2.6168869864174 1.74217288666134 2.02288833179160 2.02281550206404 2.15900566144792 2.32265749877031 1.99449056200038 2.19595034058955 2.35762769360706 1.88508102734301 0.171198013368947 0.170777246975838 0.190866343948096 0.18785241714659 0.173267369861933 0.170590883891448 0.173968516823760 0.170881021608847 0.177937395978116 0.176544750911583 0.171354025243814 0.17466224771503 0.188071869777966 0.171798219451369 0.169308511281322 0.179236931845225 0.172800072934485 0.175233410258806 0.174121119579903 3 3 + 10717877 10718328 10718109.455 10716860 10718566 + gene protein_coding_gene FALSE TRUE AT3G28580.1 AAA-type ATPase family protein similar to AATP1 (AAA-ATPASE 1), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT5G40010.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78645.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.371976265412786 3.46220436785133 0.00539587124518863 1 3.34592878264887 4.98742081269975 0.371976265412786 0.116357397828258
AT2G20875_at 4.76693882104799 4.2739749852797 3.88885084937167 3.79002830892629 3.30644141112775 3.71988818332369 3.96789602629187 4.49295285819496 5.08152810775154 4.35689080590537 4.52805476002601 5.09336311509462 4.14522413784977 4.68167029329103 4.35066409014824 4.31832813279956 3.95665389413896 4.4227173912291 4.25615527204623 0.203608855880428 0.200929680848204 0.202197221155437 0.204052628509763 0.203103992039233 0.206585976593998 0.202010861240448 0.200281464317907 0.200281464317907 0.208900360984953 0.209472660696991 0.203054712368020 0.200281464317907 0.208726095034351 0.201000737178943 0.204565414508534 0.203658940130526 0.217366504793299 0.211996341911746 2 2 - 8990265 8990580 8990380 8990157 8990693 - gene protein_coding_gene FALSE TRUE AT2G20875.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34245.1); similar to OSJNBa0036B21.12 [Oryza sativa (japonica cultivar-group)] (GB:CAD40894.1); similar to OSJNBb0034I13.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41727.3) -0.413456034797584 -3.46162292382888 0.00540137372036882 1 3.34503031354766 8.5268426998071 -0.413456034797584 0.144726076593245
AT3G18040_at 7.47254545714989 7.32620275666114 5.97127086862766 6.38941388612639 7.41782693968132 7.04482750440151 7.55688020701029 7.40025892960153 6.96501444745144 6.9365429278787 7.17890279318118 7.11827856862322 6.2657303103311 7.03520690389103 7.33933623569185 6.27701746324262 6.39041792784381 6.9902197790397 6.50323933627392 0.167198306971141 0.164748990255907 0.17165561999732 0.161040444564727 0.164046703975438 0.177021904652318 0.163602584146004 0.161861284161103 0.160779893231724 0.169322158984820 0.162138773975871 0.161180982467373 0.169976157804197 0.167697275495093 0.158498110231146 0.165143125630394 0.181302189602178 0.166600170717847 0.157799243108865 3 3|0 +|/ 6177128 6178120 6177641.333 6174727 6178471 + gene protein_coding_gene FALSE TRUE AT3G18040.1|AT3G18040.2 MPK9 (MAP KINASE 9); MAP kinase MAP KINASE 9 Identical to Mitogen-activated protein kinase 9 (EC 2.7.11.24) (MAP kinase 9) (AtMPK9) (MPK9) [Arabidopsis Thaliana] (GB:Q9LV37;GB:Q9MB22); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to hypothetical protein MtrDRAFT_AC139526g19v1 [Medicago truncatula] (GB:ABE80150.1); similar to mitogen-activated protein kinase 9 [Brassica napus] (GB:AAU95462.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|Identical to Mitogen-activated protein kinase 9 (EC 2.7.11.24) (MAP kinase 9) (AtMPK9) (MPK9) [Arabidopsis Thaliana] (GB:Q9LV37;GB:Q9MB22); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to hypothetical protein MtrDRAFT_AC139526g19v1 [Medicago truncatula] (GB:ABE80150.1); similar to mitogen-activated protein kinase 9 [Brassica napus] (GB:AAU95462.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.355173597016971 -3.46144771691711 0.00540303291354025 1 3.34475957146054 13.8853971444568 -0.355173597016971 0.103821054756681
AT1G27380_at 1.35223933235581 0.952900830427998 2.09708578079277 1.67527671539023 1.83402834350569 1.43611046318035 1.49696999197655 1.32512398443013 1.32048202812787 1.05957313512686 1.40759985671133 1.28690051280845 1.03220626061228 1.39133823064399 1.67280493620062 1.39129299648181 2.231832761276 1.72542177060208 1.30085811951774 0.198640287512522 0.198640287512522 0.219625064991333 0.203275851278203 0.198640287512522 0.198640287512522 0.209531436135076 0.199023265571620 0.207758264237197 0.199485363250434 0.201830132308076 0.198640287512522 0.219253620284061 0.198640287512522 0.210304743671071 0.200211970326207 0.206245442126545 0.205549193383393 0.203308807854686 1 1|0 -|/ 9508944 9510026 9509442.875 9508732 9510053 - gene protein_coding_gene FALSE TRUE AT1G27380.1|AT1G27380.2 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. similar to RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT5G16490.1); similar to P21-Rho-binding domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93654.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026) 0.384635181164609 3.4612806948649 0.00540461508377449 1 3.34450147469712 2.89341481021972 0.384635181164609 0.125421517319209
AT4G01920_at 2.14730037838312 2.39588558567328 1.93578020537741 1.80511741217144 1.56375359812255 1.81221429551744 1.96921521639277 1.47003343616415 2.06631952074012 2.34352991327065 1.69860472896608 1.87045794457671 1.73871714722727 1.74625215686826 1.63489080060138 1.63381982789682 1.43047387895548 1.97740335850413 2.25302850309452 0.179603314066797 0.192266734562312 0.187542332012594 0.190756836633266 0.186186368134529 0.185091936363942 0.189314042735417 0.179603314066797 0.186766338239728 0.189122238133457 0.180300172102309 0.184480738342199 0.179603314066797 0.181574100162423 0.184141056272535 0.183112502469707 0.190086299634622 0.181253832232551 0.184474852598018 4 4 - 829127 829620 829360.636 828890 831200 - gene protein_coding_gene FALSE TRUE AT4G01920.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01910.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02180.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01930.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.360512054137517 -3.45986929450216 0.00541800402649413 1 3.34232036080258 3.85605591238424 -0.360512054137517 0.108042468438721
AT1G68260_at 3.25419407298434 3.82268250818 2.26347050027185 2.28367734674289 3.14981001542678 2.96240963600404 4.80092829112303 5.33053653758283 4.28385751328610 4.87783687057124 5.72829935480143 5.99063311413911 4.96552125441938 6.10061375512888 5.60287018019177 4.87175282300905 3.98472851743007 5.64690323985301 4.43178255873423 0.252018276658866 0.251277032085015 0.241697337937478 0.240656602881223 0.239824421563793 0.247704491392751 0.237502951097979 0.239235253005925 0.246147085647636 0.240520205490624 0.238843794899187 0.248370824968673 0.237502951097979 0.247263489422322 0.249780518584071 0.241200619433015 0.240895012510777 0.241630407306318 0.23853315430473 1 1|0 -|/ 25589674 25591205 25590659.125 25589444 25591321 - gene protein_coding_gene FALSE TRUE AT1G68260.1 thioesterase family protein similar to thioesterase-related [Arabidopsis thaliana] (TAIR:AT1G68280.1); similar to Thioesterase superfamily [Medicago truncatula] (GB:ABE93263.1); contains InterPro domain Thioesterase superfamily; (InterPro:IPR006683) -0.403493589424214 -3.45954365803938 0.00542109793516215 1 3.34181711234733 8.42975074390719 -0.403493589424214 0.138356225832292
AT3G61890_at 7.1899910083619 7.93156475570873 9.22348109955905 9.34084236432308 8.96061287729697 8.4951314973404 9.12753114509353 9.20465748522266 6.06169778803899 7.6933650192157 6.14282112292903 6.69624371427352 8.12885253310401 6.85440775268002 6.13233838546133 7.99921465109384 9.0906124340789 7.28091329972307 7.48099425926458 0.232110283067175 0.234829030477730 0.228124226200716 0.235351699419382 0.234145969153664 0.23108844395786 0.231925714583588 0.227557843426395 0.259893901060065 0.232855091953163 0.232315300177141 0.231033408388331 0.230667399449080 0.239291218436057 0.243519356529866 0.227351854955402 0.23257174298732 0.244945894989295 0.233191932183551 3 3|0 -|/ 22925337 22926052 22925632.2 22925129 22926300 - gene protein_coding_gene FALSE TRUE AT3G61890.1 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. Identical to Homeobox-leucine zipper protein ATHB-12 (Homeodomain transcription factor ATHB-12) (HD-ZIP protein ATHB-12) (ATHB-12) [Arabidopsis Thaliana] (GB:Q9M276;GB:O64893); similar to ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46680.1); similar to Leucine zipper, homeobox-associated; Homeodomain-related [Medicago truncatula] (GB:ABE91214.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.426785329430688 3.45908572714485 0.0054254518555853 1 3.3411093964284 15.8689071168671 0.426785329430688 0.153456331850666
AT4G13850_at 9.9259231237971 9.72222098440781 10.0853872220103 9.67572829412696 9.89143120910425 9.42444903807577 9.21564613952569 8.82530800183866 8.48943381845005 8.48151567037378 8.60952924263592 8.9399032437388 9.16582621784345 8.93255318686768 9.05177698173213 8.7458341949054 9.10787638682916 8.40309340269853 8.31757782336167 0.139019821495758 0.136174544478924 0.13349689165327 0.134175728487834 0.135707461373134 0.137953622553642 0.132759217928006 0.137261916161719 0.148318862089182 0.142458289678416 0.134824712639472 0.136980473790672 0.136660886984603 0.139807758345014 0.144639776116885 0.134098029918059 0.146764284216591 0.139825738884880 0.142168497232907 4 4|0 +|/ 8021366 8021919 8021633 8020947 8022256 + gene protein_coding_gene FALSE TRUE AT4G13850.1|AT4G13850.2|AT4G13850.3|AT4G13850.4 ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding|ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding|ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. Identical to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (GRP2) [Arabidopsis Thaliana] (GB:Q9SVM8;GB:Q39105;GB:Q41988); similar to GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G23830.2); similar to glycine-rich RNA-binding protein PsGRBP [Pisum sativum] (GB:AAB71417.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (GRP2) [Arabidopsis Thaliana] (GB:Q9SVM8;GB:Q39105;GB:Q41988); similar to GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G23830.2); similar to glycine-rich RNA-binding protein PsGRBP [Pisum sativum] (GB:AAB71417.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (GRP2) [Arabidopsis Thaliana] (GB:Q9SVM8;GB:Q39105;GB:Q41988); similar to GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G23830.2); similar to RNA binding protein-like protein [Solanum tuberosum] (GB:ABA40453.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.393507190765771 3.45812327178107 0.00543461439837281 1 3.33962189634103 18.2452908572199 0.393507190765771 0.131766235743018
AT4G23885_at 6.25504314706056 6.36028987181154 7.1763235479366 6.80944526549984 6.21502424062194 5.22196432376254 4.59418128005243 4.73525345035658 4.89392444432732 4.27422745868488 4.69101307138804 4.43585803620139 4.29410689899975 4.3847558924748 4.6763505315904 4.31675781421527 4.48801247184421 4.68720907799654 4.05367408707404 0.273097946028885 0.274063603572178 0.279835385917521 0.28423569217751 0.274109992270138 0.262049758505390 0.259648038329726 0.257035599865913 0.263434987753353 0.263287725430668 0.261262145705484 0.257035599865913 0.258273390877983 0.257035599865913 0.258086335969145 0.259291823666519 0.264302310310797 0.266120337061377 0.257259328806226 4 4|0 +|/ 12419493 12420003 12419811 12419404 12420477 + gene protein_coding_gene FALSE TRUE AT4G23885.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24165.1) 0.479490025722507 3.45630063131761 0.00545200940111931 1 3.33680473684601 10.3729572930715 0.479490025722507 0.185721270513840
AT4G29520_at 8.30293454464634 7.91102420646055 8.55399342182488 8.4503792314599 6.99002530886562 6.41315683525508 4.43116925675181 4.36681919133296 4.68019757126705 4.16941806866371 3.57576483961388 4.68390661900671 3.42826765557791 3.56637883895576 3.98072325104072 3.56704145718562 3.27356422593033 3.62409411429451 4.05501004654799 0.313812992758774 0.322801155708293 0.316027835909138 0.309979157204568 0.306907269100002 0.310719701367217 0.301440634260328 0.306041095973630 0.296780615514439 0.30368504232176 0.303307194040513 0.299112365024653 0.300696955777319 0.311941342288709 0.295939715877595 0.302888202792796 0.304346174187605 0.300539133670320 0.30092070599743 4 4|0 -|/ 14494066 14495041 14494590.222 14493917 14495751 - gene protein_coding_gene FALSE TRUE AT4G29520.1 similar to Saposin B [Medicago truncatula] (GB:ABE80541.1); contains InterPro domain Saposin B; (InterPro:IPR008139) 0.379913814630607 3.45599142796599 0.00545496605349934 1 3.33632678887538 10.9344425099214 0.379913814630607 0.122520719702356
AT2G41140_at 7.08077181732951 7.27617899745424 7.58692709176825 7.50628427257495 7.00596412920962 7.23268416117355 8.04735197031893 8.18910284529265 7.63797818906299 7.45175687835539 7.22600473064662 7.19502605676264 7.05778665869852 6.82799961203686 6.80010758140803 7.57964382509141 7.62544496399994 7.05302706439826 7.3125549379263 0.169974518720244 0.166655225639467 0.162695044826061 0.166077235435237 0.172509950592401 0.182945138517622 0.177301969920145 0.164436995112382 0.176086238367493 0.172734861316258 0.163649278316794 0.16458371186615 0.170551660230375 0.189495625521368 0.187095994628256 0.166988862216517 0.181292852250614 0.174168486036548 0.168281123752662 2 2|0 +|/ 17159484 17160427 17160050.1 17157465 17160768 + gene protein_coding_gene FALSE TRUE AT2G41140.1 CRK1 (CDPK-RELATED KINASE 1); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase Encodes CDPK-related kinase 1 (CRK1). similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G19100.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G56760.1); similar to putative calcium/calmodulin-dependent protein kinase CaMK [Oryza sativa (japonica cultivar-group)] (GB:BAC16472.1); similar to CDPK-related protein kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96128.1); similar to Protein kinase [Medicago truncatula] (GB:ABD33022.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.306093217034257 -3.45583286516035 0.00545648289470572 1 3.33608168879763 14.8096881923461 -0.306093217034257 0.0589866445972796
AT4G05070_at 10.7934937449674 11.0731221060601 10.9036972526534 10.9493335742250 11.6796982123097 11.4135787754333 10.3286086823208 10.4342811819578 10.7499317678873 10.6937379931884 11.0219841328668 10.6245405602017 10.9114641160280 10.8824850226817 10.2916027857300 10.7207070398868 10.8454198489564 10.3771308420790 10.5276682978482 0.0871583934204629 0.0855656448317406 0.0871195720902946 0.0874805364805508 0.0909468533476433 0.0880365047954701 0.0843869150656581 0.0866303395961499 0.104397508496498 0.085234205929159 0.0858972714774824 0.0832956190533674 0.083024949511163 0.0906479953669969 0.0859006950133254 0.083024949511163 0.0869014016396895 0.0871144967145652 0.0859620892547615 4 4 - 2593784 2594016 2593880.273 2593593 2594117 - gene protein_coding_gene FALSE TRUE AT4G05070.1 similar to wound induced protein-like [Vitis vinifera] (GB:AAO12870.1) 0.315752316037325 3.45493370769413 0.00546509259005611 1 3.33469176574629 21.6302414311718 0.315752316037325 0.069709229598448
AT3G43840_at 0.934568501882904 0.703528210817919 0.52948627694912 0.622139170782084 0.426006785648704 0.259285586403891 0.668763313524635 0.371608018423359 1.13266885680184 1.15733736713214 0.0774253865394628 0.413108515345837 0.54351912137809 0.922023609180554 0.290057161719322 1.09734054782257 1.16698316173146 0.703075541703178 0.94778274163403 0.202149963080815 0.197493600925124 0.202684059385275 0.206248804803083 0.197493600925124 0.203397688784678 0.2053652373128 0.197493600925124 0.209591344803071 0.199321348363686 0.200002634469352 0.201446923116972 0.197493600925124 0.201211703281156 0.205642637008038 0.202979848615572 0.208798599764509 0.204702324625764 0.208153614168352 3 3|0 +|/ 15711374 15711605 15711473.875 15711339 15711842 + gene protein_coding_gene FALSE TRUE AT3G43840.1 similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT2G16530.2); similar to 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal [Medicago truncatula] (GB:ABE79941.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) -0.318979457030683 -3.45445860083632 0.00546964750362232 1 3.33395731442444 1.42990054265419 -0.318979457030683 0.0730244345687121
AT3G26770_at 0.896602572809275 0.52566255889256 0.767442674029845 0.933512911966309 0.8768158066619 0.930657668142183 0.82839623384507 0.995229394099504 0.270147149324229 0.205859038093413 0.809889597924812 0.420231629919978 0.616004344042222 0.902832707749184 0.90567533920659 0.751222193535463 1.14764085031769 0.84762683532937 0.185856371847504 0.216118189322917 0.211271783294854 0.212686528294278 0.210287565426734 0.211686378550948 0.214075498844937 0.210856602275045 0.214662503789495 0.228945324477658 0.230300709970694 0.2302949876588 0.214197106100950 0.221981313908857 0.217507020345955 0.219346589294100 0.219166089437403 0.213510561631251 0.214561616817258 0.218960798630029 3 3|0 +|/ 9847493 9848292 9847881 9846721 9848385 + gene protein_coding_gene FALSE TRUE AT3G26770.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G26760.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD32552.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.322577079726619 3.45385244547532 0.00547546445173926 1 3.33302025139149 1.35467062272660 0.322577079726619 0.0765965956988866
AT1G23030_at 5.24037913869411 5.09872783009843 4.12086808842615 4.24583997759124 5.40724181796745 5.82833102409262 6.19060651372489 6.13328351577834 8.248466020325 6.41813121469849 8.99668848455304 7.980670962505 7.18666437249092 7.46948935880063 7.90419724200763 6.94506001519594 5.93390429390723 6.8602167321419 7.22592960680717 0.253416294778391 0.230682128735921 0.268259553383541 0.233566875065286 0.229930227760438 0.230939497554243 0.231877766029466 0.231436764546755 0.231329916243797 0.231252354202197 0.237125295041288 0.231712381307545 0.225102018611431 0.236468141507333 0.225719006582175 0.236407926564762 0.243540751718192 0.2303694318133 0.234686035563462 1 1 + 8158235 8158728 8158461.818 8156635 8159066 + gene protein_coding_gene FALSE TRUE AT1G23030.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71020.1); similar to Os03g0275900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049711.1); similar to Os02g0732200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048024.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD67947.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.326538268565589 -3.45215593893014 0.00549177867728029 1 3.33039743233982 12.6367199282852 -0.326538268565589 0.0804816035372876
AT2G27730_at 9.50903465941302 9.2493541503442 9.50401853554944 9.69065738383313 8.97917480207352 9.0561196731534 8.96103692899918 9.36204597785626 8.90868449154647 9.18101688663301 9.46676783327273 9.70380155749915 9.4762760381517 9.71155601132828 9.88341997555503 9.58777998211365 9.57934222361115 9.4654645146078 8.82813538251128 0.104838551549980 0.103400744780382 0.115815132794996 0.108879035789964 0.109191041019077 0.109414146873461 0.106231024920712 0.106789211790520 0.115791307893399 0.105230704416572 0.104438500502517 0.102620960411215 0.106363554652435 0.107819326366179 0.104814938188256 0.102623150607852 0.114624625759672 0.112245686999995 0.117912603980980 2 2|0 -|/ 11827133 11827893 11827368 11826906 11828955 - gene protein_coding_gene FALSE TRUE AT2G27730.1 Identical to Unknown mitochondrial protein At2g27730 [Arabidopsis Thaliana] (GB:Q9ZUX4;GB:Q8LBD1); similar to Os09g0568900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063974.1); similar to putative F1F0-ATPase inhibitor protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13133.1); similar to Os08g0559000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062499.1) 0.336906716476528 3.45159534340117 0.00549718052268666 1 3.32953069050332 18.5798868991933 0.336906716476528 0.0897546302875232
AT3G19400_at 7.40783567130203 7.55885974504195 7.10484022475834 7.23137107119297 7.97336117426027 7.19899477996403 7.13984523722348 6.49961573297862 7.0268688190463 6.75128772918612 8.33282341614737 8.27324702729564 7.65400379542869 7.9061694277581 7.73263262966891 7.56466771679937 6.91051447273909 7.47595382627572 7.30618760409865 0.214675890565144 0.207359463193540 0.221937442728711 0.211953358690705 0.220435216691369 0.229722706563289 0.207359463193540 0.211484666556019 0.227257404598274 0.218375527954154 0.207550264333582 0.210907603949301 0.224817772379029 0.212757180978098 0.211339008278258 0.211699101701825 0.227197653060253 0.225887614421682 0.219905479113932 3 3|0 +|/ 6726161 6726836 6726553.1 6725474 6727006 + gene protein_coding_gene FALSE TRUE AT3G19400.1|AT3G19400.2 cysteine proteinase, putative Identical to Probable cysteine proteinase At3g19400 precursor (EC 3.4.22.-) [Arabidopsis Thaliana] (GB:Q9LT77;GB:Q8GT77); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT3G19390.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60578.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.464369768738903 3.45091181998991 0.00550377426472271 1 3.32847385213878 14.6440235828191 0.464369768738903 0.177189338994708
AT3G30390_at 11.2206403942136 11.3785226995303 11.6659142936976 11.7642326644727 11.8884515023345 11.6774043357741 11.3346626466388 11.2675055349049 11.0470474225393 11.4026338588729 11.3074816516039 11.1059148146475 11.4305670485516 11.3285511659504 11.0580584780758 11.3201702425555 11.4632275686012 11.4408081618590 11.0254109538230 0.110713995623494 0.107876162251806 0.111537350826991 0.108837399585314 0.108949187746847 0.111173305484741 0.108863901901796 0.111676413919123 0.118108666077976 0.110454043178952 0.109201826977249 0.107118189083579 0.107118189083579 0.107533405098051 0.111522521872625 0.110892339487335 0.117221349664448 0.110650694611698 0.110456210066187 3 3 - 11979654 11980225 11980030.545 11979316 11982100 - gene protein_coding_gene FALSE TRUE AT3G30390.1|AT3G30390.2 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino acids transporter NAT-1 [Oryza sativa (japonica cultivar-group)] (GB:BAD73448.1); similar to Os02g0727100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047994.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.298575596658350 3.45065843283767 0.00550622067414954 1 3.32808206417633 22.757272493892 0.298575596658350 0.0500497031120546
ATMG00690_at 3.19934315665528 4.73879503069477 3.24827599588608 3.82875052001108 2.98609011421653 3.76600802112917 3.79818724619277 4.74016656523876 2.86147963516525 3.61079565111925 2.11764543115098 2.40215820944139 3.1957451855051 2.32129646702328 2.43560414426699 2.99308942255755 3.45398171121203 2.13149075989105 4.19413502692935 0.273245909400005 0.265177440479964 0.266564932592906 0.270797851966979 0.265177440479964 0.276360285947892 0.265177440479964 0.273884177811376 0.279258208879640 0.273811779179683 0.266865037194039 0.270739130147707 0.265177440479964 0.274354778219662 0.272243441821154 0.265665718194051 0.274570233743879 0.27097717418118 0.272085414027134 M M - 203634 204019 203817.182 203588 204310 - gene protein_coding_gene FALSE TRUE ATMG00690.1 Identical to Hypothetical mitochondrial ribosomal S3-like protein AtMg00690 (ORF240a) [Arabidopsis Thaliana] (GB:P92511); similar to Hypothetical mitochondrial ribosomal S3-like protein AtMg00690 (ORF240a) (GB:P92511); contains InterPro domain Ribosomal protein S3, N-terminal; (InterPro:IPR008282); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019) -0.792967762454127 -3.44992058696456 0.00551335080454789 1 3.32694117327305 6.88162534164589 -0.792967762454127 0.354760360848835
AT1G54860_at 1.53260926598140 1.38025815657608 1.75969404282526 1.55354717693392 1.65953936886886 1.39203863914126 1.98278359510382 1.64827600804732 1.96433482043235 2.60117163804251 1.2399552567408 1.447908498124 1.60808349359514 1.86919705897417 1.42959758883654 1.65061329479794 1.75644614279132 1.84085710972075 2.11250725470591 0.223591022568014 0.212201406378293 0.213424778672628 0.216902243085756 0.219835685107567 0.225689303659436 0.212660841479789 0.21885846636831 0.213840000215436 0.213339848889629 0.225964770335323 0.212620995730698 0.216681048377599 0.215429054150229 0.209963614764356 0.214191018942045 0.223157103154556 0.220787364709803 0.211259788876002 1 1|0 -|/ 20461191 20462066 20461528.4 20461088 20462298 - gene protein_coding_gene FALSE TRUE AT1G54860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19250.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32399.1) -0.332724607548754 -3.44850279849414 0.00552707811600505 1 3.32474879294797 3.52926171993866 -0.332724607548754 0.0863817322231012
AT2G24060_at 8.8787070759837 9.01206433862101 8.42516210875603 8.4207200956171 8.91972510102509 8.70424072415764 9.44993561278121 9.15167869004675 9.20989562008756 9.65148657669567 9.45054423663647 9.9278145329337 9.12318677655567 9.29357600010398 9.79490548384103 9.36699194688183 9.15163375601211 8.81205345958116 9.59632294399234 0.117133773255622 0.119915648593017 0.120220411447109 0.119897257731059 0.126264649007598 0.116409396011894 0.120933657468365 0.120326531360219 0.141350650457549 0.119964160113228 0.117192197041202 0.116869054942523 0.118424337088907 0.119938854097142 0.124585634767307 0.120560680291917 0.124407955602027 0.128602815970295 0.120663952667010 2 0|2 /|+ 10237455 10238445 10238082 10236465 10238643 + gene protein_coding_gene FALSE TRUE AT2G24060.1 translation initiation factor 3 (IF-3) family protein similar to translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] (TAIR:AT4G30690.1); similar to Initiation factor 3 [Medicago truncatula] (GB:ABE79490.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) -0.313223930746408 -3.44793177073464 0.00553261681991905 1 3.32386574228568 18.2957742122036 -0.313223930746408 0.0677337368152553
AT4G25110_at 6.617568461306 7.67320297241403 4.41230482450146 4.24815492941349 4.48692724740709 4.42853767907464 1.65101981268842 1.47211019723172 3.36868681844431 1.58357605247822 0.979909417345589 1.21373004995427 1.07701172383209 1.45779286124368 0.689368348336334 1.05268491444535 1.54164393410177 1.48571168090370 1.62079827013681 0.330722562335211 0.302974390359972 0.307309339363053 0.302933436526716 0.301498597425318 0.309872610541870 0.293843475234425 0.293796130365681 0.300136825877366 0.292310973423687 0.295956960416911 0.294767409899211 0.303667501960163 0.292310973423687 0.299754598622949 0.292310973423687 0.293557954974607 0.292310973423687 0.292310973423687 4 4 - 12888339 12889231 12888885.9 12887528 12890272 - gene protein_coding_gene FALSE TRUE AT4G25110.1|AT4G25110.2 latex-abundant family protein (AMC2) / caspase family protein|caspase similar to LOL3 (LSD ONE LIKE 3), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G02170.1); similar to hypothetical protein [Oryza sativa] (GB:AAG60197.1); similar to Os10g0565100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065417.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) -0.481641477446819 -3.44726540649437 0.0055390874420848 1 3.322835225766 6.06285426381634 -0.481641477446819 0.187724623193905
AT3G20930_at 6.90932696303989 6.49075785879494 6.3626899664907 6.23038480271771 7.03994363044334 6.21150163818402 7.43958703095995 7.05445689190741 7.62594052521799 7.66439520353755 7.30615532472999 7.45484543877686 7.17614637718215 7.38798824316812 7.55902767463897 7.71607016263368 6.5191324132948 7.23748508108919 7.82171594107557 0.205860061014850 0.210633505617165 0.20755842218058 0.207337653548736 0.222470643000104 0.207371391001112 0.218009971684653 0.204978501753292 0.217732305879147 0.206564810272037 0.209540295499427 0.201903773016560 0.205966328526492 0.211227793278564 0.212709826582834 0.211509905146844 0.216704812256208 0.210424823048068 0.206151268588030 3 3|0 +|/ 7332503 7333730 7333196.111 7331731 7334035 + gene protein_coding_gene FALSE TRUE AT3G20930.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G73530.1); similar to Os02g0730800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048016.1); similar to RNA-binding re (GB:ABE80433.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.46090653027721 -3.44726247159649 0.00553911595809814 1 3.32283068693188 14.2166428791754 -0.46090653027721 0.175404890719008
AT2G41840_at 10.5445376995911 10.6141684094066 9.96007273991534 10.1148205687755 10.1815113894436 10.1043676621753 10.6890618521778 10.7857191392653 9.83495496090586 10.2574723179176 10.1039534162650 10.5446259536245 9.74141013403252 9.76325028890354 10.6975967276771 9.72447382316044 9.92631651057509 9.6601527773235 10.0005464392401 0.116701560891923 0.114090251533450 0.119505201486688 0.114090251533450 0.114537275537053 0.118501144425004 0.115592296731273 0.117299089022645 0.127669077692009 0.116388199873576 0.115806548130449 0.114976036496299 0.124445440627915 0.119087316900263 0.119515781122392 0.115997141837585 0.118910772207220 0.125636652329998 0.119620698965933 2 2 - 17467105 17468188 17467699.364 17466866 17468617 - gene protein_coding_gene FALSE TRUE AT2G41840.1 40S ribosomal protein S2 (RPS2C) Identical to 40S ribosomal protein S2-3 (RPS2C) [Arabidopsis Thaliana] (GB:P49688;GB:O22936); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to Ribosomal protein S5, bacterial and organelle form [Medicago truncatula] (GB:ABE90730.1); contains InterPro domain Ribosomal protein S5, eukaryotic and archaeal form; (InterPro:IPR005711); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.28947373522103 -3.44722080990924 0.00553952076703529 1 3.32276625684668 20.3998892792437 -0.28947373522103 0.0363369929243921
AT1G06720_at 2.99005143673933 3.53881133308612 3.15677748415874 3.06767386864453 3.20621531195351 2.93832746090635 4.04816488425988 4.204610858854 2.65403279469672 2.48743784183846 2.52426876990528 2.66781774753651 2.30567487210298 2.50660375235068 2.64218355480069 2.39087997969031 2.91556139900583 2.65577000061397 2.94857041712071 0.210652371281400 0.210191508363446 0.204819076658072 0.214461685859343 0.206908368987245 0.204819076658072 0.212344926187089 0.213835355342739 0.2077089119125 0.218280439311482 0.206485052162414 0.204819076658072 0.211907161678769 0.208136977862701 0.207761806051588 0.205217498318475 0.213469653233431 0.207733221626423 0.211073665044385 1 1|0 -|/ 2060888 2061384 2061231.3 2060443 2067322 - gene protein_coding_gene FALSE TRUE AT1G06720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G42440.1); similar to PREDICTED: hypothetical protein LOC553241 isoform 2 [Danio rerio] (GB:XP_709801.1); similar to PREDICTED: hypothetical protein XP_679814 isoform 1 [Danio rerio] (GB:XP_684906.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57303.1); contains InterPro domain AARP2CN; (InterPro:IPR012948); contains InterPro domain Protein of unknown function DUF663; (InterPro:IPR007034) -0.361873219268447 -3.44590061391474 0.00555236427936627 1 3.32072448785239 6.03021676018501 -0.361873219268447 0.110174286657863
AT4G35290_at 3.10275836790436 3.67902696761784 3.92879041684394 4.12016978129626 3.96009342737943 4.28224680696562 6.16881044425232 6.04313188993142 3.17786340650777 4.98784666226149 4.08397731819466 3.73633767096721 4.89708839452028 4.00993711592505 3.48971301478715 4.92074230775362 4.3931307369668 3.80673056579644 4.56781057828646 0.267014953072649 0.258250991964737 0.255718522424026 0.258102136767283 0.259498631660789 0.263965323430362 0.259596100370142 0.262234116176329 0.274735555642713 0.255718522424026 0.256825224088107 0.255718522424026 0.260286055815337 0.26629781518851 0.262747129645635 0.261240444032829 0.264847844288557 0.255718522424026 0.262043231837674 4 4 + 16792807 16793320 16793062.818 16789554 16793685 + gene protein_coding_gene FALSE TRUE AT4G35290.1|AT4G35290.2 GLUR2 (Glutamate receptor 2) Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.2 precursor (Ligand-gated ion channel 3.2) (AtGluR2) (GLR3.2) [Arabidopsis Thaliana] (GB:Q93YT1;GB:O65498;GB:Q9C561); similar to GLR2 (GLUTAMATE RECEPTOR 2) [Arabidopsis thaliana] (TAIR:AT2G17260.1); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to ligand gated channel-like protein [Brassica napus] (GB:AAF21901.1); similar to Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) (AtGLR2) (GB:Q7XJL2); similar to glutamate receptor [Raphanus sativus var. sativus] (GB:AAQ02674.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.376453275521588 -3.44490609822899 0.00556205958089139 1 3.31918630639515 8.6164855242568 -0.376453275521588 0.120926639049479
AT4G37180_at 7.00630025609674 6.87366644495079 8.1100447814821 8.0800003187147 8.18532026805877 7.32893070822828 8.05237963820376 7.87996425921772 4.90398064236067 6.64598866177843 5.33363269313747 6.05229469329233 6.0973612374377 6.15915897272028 5.96409158987753 5.71419768498629 6.89587378513507 5.73739215091801 5.30693090283042 0.229364683390581 0.242178227617852 0.233682824560325 0.229509695934841 0.234308093644482 0.25087298061647 0.231624785873018 0.230674269927638 0.242381431071183 0.231217627506322 0.229583141931605 0.229318059517916 0.229318059517916 0.236068680481826 0.232552432512768 0.229318059517916 0.250730237822332 0.234357855607039 0.238313792261485 4 4|0 +|/ 17505336 17505933 17505655.2 17504558 17506361 + gene protein_coding_gene FALSE TRUE AT4G37180.1|AT4G37180.2 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G03500.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os03g0764600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051369.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.424139992392648 3.44350525562033 0.0055757455304827 1 3.31701953084725 13.4961843776664 0.424139992392648 0.152996818756465
AT1G74760_at 1.05983837147549 1.25709404185615 1.58145497873742 0.880580108143895 2.42171438713046 2.10587214796638 1.24738122006283 1.1141891750519 1.47039250613361 1.93691747498404 2.21515075744054 2.72275442472722 3.22971212272515 2.08036363353949 1.98330985520997 2.16044228068847 1.59748979399860 1.07982093097181 2.30909737910322 0.224639216780025 0.220071671778113 0.218644097534088 0.222930051746035 0.219410929035497 0.218644097534088 0.219734570163545 0.220590764052126 0.231434892136736 0.220310286002342 0.219626166346186 0.218644097534088 0.225948213712335 0.219627514878424 0.21932458545111 0.218644097534088 0.221245973491802 0.229603370383696 0.224236246432851 1 1|0 -|/ 28093374 28094304 28093888.7 28093356 28094608 - gene protein_coding_gene FALSE TRUE AT1G74760.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18910.1); similar to Os05g0551000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056245.1); similar to putative E3 ubiquitin ligase [Lotus japonicus] (GB:BAF38781.1); similar to putative zinc finger protein [Zea mays] (GB:AAM95976.1); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.402970529110989 3.44331813630146 0.00557757626142847 1 3.31673008843043 3.47806535129621 0.402970529110989 0.139266736568488
AT1G03630_at 10.8026528365050 10.835871851129 10.4842201609621 10.4121042478175 10.5626670731414 10.5349069940541 11.4995555439401 11.4853567168628 11.4105823653433 11.5242693899150 11.4772202293919 11.7260349503329 11.2103421470142 11.3804028385291 11.7233518246888 11.4954486306613 11.1349892251098 11.4315278436938 11.1189436723155 0.0737647658065958 0.0731508197743044 0.0743098741959788 0.0756511620950838 0.0712757835319337 0.0712757835319337 0.0712757835319337 0.074522678503722 0.0758460279766849 0.0712757835319337 0.0719342838488628 0.072119841297022 0.0729453160029465 0.0757869051071718 0.0727394584173416 0.073251172877452 0.0771891514638454 0.0726532289409352 0.073098328968881 1 1|0 +|/ 908670 909144 908889.4 907641 909375 + gene protein_coding_gene FALSE TRUE AT1G03630.1|AT1G03630.2 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase|POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); oxidoreductase/ protochlorophyllide reductase Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. Identical to Protochlorophyllide reductase C, chloroplast precursor (EC 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) (PORC) [Arabidopsis Thaliana] (GB:O48741); similar to PORA (Protochlorophyllide reductase A), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT5G54190.1); similar to PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT4G27440.2); similar to Protochlorophyllide reductase, chloroplast precursor (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (GB:Q9SDT1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Light-dependent protochlorophyllide reductase; (InterPro:IPR005979); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.280617524731191 -3.44213590620401 0.00558915717965954 1 3.31490130664022 22.2265068549027 -0.280617524731191 0.0147619143476349
AT3G16980_at 1.84487802273739 1.72868001667161 2.22979903893042 2.26309741299331 1.75107796527516 2.09171051282277 1.80072913710280 1.89725402876414 1.65687958081031 1.43151975001663 1.81010892215615 1.89133694262204 1.74857784024654 1.75489696264305 2.22679877640486 1.89849961866739 2.06462947905866 2.05285551982489 1.64306482286442 0.195116764029068 0.197359045989336 0.198999655285094 0.204151929853678 0.194440258120923 0.198875942761547 0.204732424008480 0.203066108403585 0.203546980660712 0.198805684958568 0.210978181450409 0.194012836346265 0.193384737791009 0.199808038887125 0.202256048696404 0.197904780554746 0.213982708119258 0.200069106357214 0.19877567969297 3 3|0 +|/ 5794817 5795678 5795400 5794442 5795833 + gene protein_coding_gene FALSE TRUE AT3G16980.1 DNA-directed RNA polymerase II, putative similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT4G16265.1); similar to DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula] (GB:ABD32320.1); contains InterPro domain Zinc finger TFIIS-type 2; (InterPro:IPR013138); contains InterPro domain DNA-directed RNA polymerase, subunit C11/M/9; (InterPro:IPR012164); contains InterPro domain DNA-directed RNA polymerase, M/15 kDa subunit; (InterPro:IPR001529); contains InterPro domain Transcription factor TFIIS; (InterPro:IPR001222) 0.309922110496130 3.44211032800264 0.00558940801157876 1 3.31486173862456 3.70496212971223 0.309922110496130 0.0647414926262607
AT1G09160_at 4.46363436123349 4.61785976793183 3.84431999076524 3.91081669447841 4.49378316303506 4.27628793281291 5.32163442466087 4.96469586385015 5.12659765318022 5.45148732737144 5.86235724107018 6.22599071791408 5.23476118954362 5.12853899347335 5.71145916317823 5.18599376526144 4.62518313830383 4.99336354198993 5.33999675114162 0.223589147767302 0.220889321588508 0.220643878662825 0.228251466068997 0.216306649868351 0.219723293916011 0.216306649868351 0.224078351468838 0.223302971086807 0.226770121947663 0.225131053172574 0.221313643882869 0.224636967063819 0.225323297288678 0.222317406277151 0.219739795172268 0.221718452731160 0.218817358416732 0.219934875278498 1 1 - 2953268 2953937 2953577.909 2952773 2955669 - gene protein_coding_gene FALSE TRUE AT1G09160.1|AT1G09160.2 protein phosphatase 2C-related / PP2C-related similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G68410.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABD28356.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85667.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.322862717101053 -3.44172248953941 0.00559321275355966 1 3.31426176788862 9.82512063121579 -0.322862717101053 0.077954662453912
AT2G34470_at 9.37873295257905 9.56227831926594 9.55923292179466 9.66073060376345 9.66618885102801 9.4972389908297 9.06690950751215 8.82461511413248 8.73831850269451 9.00686601001139 9.1926117192457 9.03479264355548 8.71593084747123 9.29179415943696 8.93715920393369 9.20706107053823 9.3210312732898 8.88528356389668 8.78935340420774 0.133901059586997 0.136272749580750 0.139808937784229 0.141161300073964 0.133901059586997 0.138727061952336 0.133901059586997 0.145153975156819 0.161701190598333 0.133901059586997 0.137052036907869 0.1355330390721 0.139276619489722 0.136565032042007 0.141789756994355 0.134310495580073 0.144405836355948 0.144143189093740 0.143491960139589 2 2|0 -|/ 14538158 14538909 14538467 14537814 14539584 - gene protein_coding_gene FALSE TRUE AT2G34470.1|AT2G34470.2 UREG (urease accessory protein G); metal ion binding / nucleotide binding Encodes a urease accessory protein which is essential for the activation of plant urease. similar to urease accessory protein G [Solanum tuberosum] (GB:CAC33003.1); contains InterPro domain [NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding GTPase; (InterPro:IPR012202); contains InterPro domain Urease accessory protein UreG; (InterPro:IPR004400); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) 0.308037978173988 3.44161544089115 0.00559426338131403 1 3.31409616562528 18.3610179238509 0.308037978173988 0.0626929325935622
AT2G41120_at 5.49504512794741 6.08346213342577 6.46924211286526 6.56782097286953 5.81907797438528 5.66408103864103 8.00123034531931 7.75236825261116 5.79101751801273 7.68731509863655 6.92355442766558 6.79487830917958 7.05410197358792 6.79924380241318 6.12286241594537 8.09863966535348 7.46267490424597 6.94335527131607 7.69495586400039 0.232797363824491 0.219518920449986 0.217655482359508 0.224931798282273 0.217655482359508 0.219857100340690 0.223893796891299 0.220706435412695 0.232071953424849 0.222302039771577 0.228595627574361 0.218028907986368 0.217655482359508 0.218739612143008 0.223258307749967 0.219694235726953 0.229466294901514 0.228584335605897 0.223135790371414 2 2|0 -|/ 17148540 17149192 17148777.3 17148353 17149535 - gene protein_coding_gene FALSE TRUE AT2G41120.1 similar to Protein of unknown function DUF309 [Medicago truncatula] (GB:ABD28652.1); contains InterPro domain Protein of unknown function DUF309; (InterPro:IPR005500) -0.367909960402735 -3.44109845884915 0.00559934014524907 1 3.31329639037412 13.5228793313064 -0.367909960402735 0.115040195482226
AT4G11300_at 6.05083224966571 5.48529526447392 6.29072619240939 5.70190449877722 5.65226373729852 5.68056961491493 4.71378744436005 4.36759626447632 5.02122115812393 4.98884326118651 5.56441130046949 4.98581082036059 5.06032937551509 5.46003586462052 4.67593264810619 5.1563459169566 5.26685774683433 5.10274428932481 4.95089029708491 0.175377413405534 0.176220182937983 0.183253339559293 0.177397460390175 0.177430314426183 0.177922864728896 0.176517629780253 0.182720793490171 0.180421277382991 0.176920967751222 0.182507246594461 0.175819649254396 0.176101641916849 0.179699921818095 0.182680183848664 0.176581290508695 0.183551313926467 0.177173052586436 0.177243812270459 4 4 - 6872566 6872909 6872740.455 6872147 6873537 - gene protein_coding_gene FALSE TRUE AT4G11300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23530.1); similar to CAA303718.1 protein [Oryza sativa] (GB:CAB53491.1); similar to Os04g0688000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054336.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) 0.424530897457175 3.43973670580263 0.00561273518503421 1 3.31118963950558 10.5658936086663 0.424530897457175 0.153540806014596
AT4G02050_at 7.05729922191635 7.6305848258181 7.01388541474039 7.34117294453502 7.79997669583075 7.04210849430707 6.68288092029983 6.53158121755776 5.55688282943912 6.2407869391086 4.32491730582459 4.03953940328308 5.30681222859128 4.90265481694385 3.64722369177919 4.35449305288775 5.28441715624546 4.62595860091177 5.61983499269954 0.283503344395444 0.277264281357385 0.293278052202427 0.276170810500347 0.276170810500347 0.289083173011698 0.277095488824994 0.276170810500347 0.301739889096121 0.284426177232331 0.277264773824002 0.278530653420105 0.284734379138434 0.277107367331209 0.284782670962586 0.276170810500347 0.291201289145312 0.291054064790531 0.285943980415453 4 4 - 898505 898952 898719.273 898307 900816 - gene protein_coding_gene FALSE TRUE AT4G02050.1 sugar transporter, putative Identical to Sugar transport protein 7 (Hexose transporter 7) (STP7) [Arabidopsis Thaliana] (GB:O04249;GB:O04262;GB:O81705); similar to MSS1 (SUGAR TRANSPORT PROTEIN 13), carbohydrate transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G26340.1); similar to hexose transporter 7 [Vitis vinifera] (GB:AAX47308.1); similar to putative hexose transporter [Vitis vinifera] (GB:AAT09977.1); similar to Sugar carrier protein A (GB:Q10710); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.460691773701045 -3.43964210407221 0.00561366696559728 1 3.31104327654303 12.3207296931127 -0.460691773701045 0.175889385812256
AT4G29680_at 7.61251324680283 7.69559400696766 7.30285915730453 7.69777553034985 7.3563664812813 6.9886869467994 7.16136486888838 7.37889103787734 6.02038827112292 6.36355104849513 6.74041108639607 7.23347428480339 7.2843560439963 7.31537326471904 6.94752978887766 6.86025695430104 6.87659404317424 7.2314486467041 6.3215000055877 0.209466197166406 0.201958443901123 0.221172943265773 0.217179463703171 0.201958443901123 0.209948846550252 0.201958443901123 0.202010785834907 0.221062189528732 0.210141752717656 0.208238330977891 0.204973891379266 0.206151868044369 0.202546012097270 0.208912796173008 0.208106030152369 0.219975169405873 0.207905176328236 0.211177716489122 4 4 - 14538079 14538509 14538310.364 14537787 14539600 - gene protein_coding_gene FALSE TRUE AT4G29680.1 type I phosphodiesterase/nucleotide pyrophosphatase family protein similar to type I phosphodiesterase/nucleotide pyrophosphatase family protein [Arabidopsis thaliana] (TAIR:AT4G29690.1); similar to Type I phosphodiesterase/nucleotide pyrophosphatase [Medicago truncatula] (GB:ABE79240.1); similar to nucleotide pyrophosphatase-like protein [Spinacia oleracea] (GB:BAB20681.1); similar to Type I phosphodiesterase/nucleotide pyrophosphatase [Medicago truncatula] (GB:ABE90599.1); contains InterPro domain Type I phosphodiesterase/nucleotide pyrophosphatase; (InterPro:IPR002591) 0.350182655592977 3.43907115544668 0.00561929389751614 1 3.31015991795985 14.0474198874623 0.350182655592977 0.101700683301179
AT4G16920_at 2.27544514070543 2.10724962307008 2.22483847540802 2.62142370384405 2.22292660550727 2.63012771789328 2.1368354609052 1.93598286506769 2.32891997740388 2.61634514343283 2.89434777208117 2.938146033262 2.84357262674596 3.05266905712783 2.58534907641979 3.43975244325539 2.41911990819702 2.93173071786724 2.49983316172559 0.223514374547487 0.226020064063316 0.226328051287983 0.222667589899794 0.224773109083216 0.222296341282761 0.218782526826845 0.219610578879471 0.230217097155939 0.219828613192143 0.233688109867707 0.228643689311971 0.221442955094143 0.23917310010274 0.234817054075249 0.223293100472645 0.220984636133485 0.224381102680389 0.219226237592155 4 4|0 -|/ 9519192 9520055 9519475.3 9519192 9525710 - gene protein_coding_gene FALSE TRUE AT4G16920.1 disease resistance protein (TIR-NBS-LRR class), putative similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) [Arabidopsis thaliana] (TAIR:AT4G16860.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to TIR [Medicago truncatula] (GB:ABE88900.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.358668690037419 3.43879502734972 0.00562201732731473 1 3.30973268904474 4.95424638999529 0.358668690037419 0.108311219669504
AT1G10630_at 7.86431632609305 8.18055442752062 8.1644313284499 8.23816250115934 7.93909483807036 8.01937952275988 7.55497275282656 8.01497663800153 7.97903449764637 7.95932822715042 8.72132225922183 8.71435118233356 8.40195040561194 8.32867460279953 8.74140020019351 8.25468512014502 8.15030172776402 8.2986925531119 7.89930113002347 0.127975092580699 0.121647218563309 0.121647218563309 0.126982150158603 0.123547710049701 0.13164544713936 0.132045294666593 0.128093916919275 0.131656476280263 0.128608097197161 0.126396072130569 0.126257185195366 0.127008454921766 0.128457084715449 0.124667947950017 0.121647218563309 0.134187922317616 0.126027793010134 0.126561239500470 1 1|0 -|/ 3513358 3514196 3513645.111 3512796 3514730 - gene protein_coding_gene FALSE TRUE AT1G10630.1 ADP-ribosylation factor, putative A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Medicago sativa] (GB:AAR29293.1); similar to ADP ribosylation factor 002 [Daucus carota] (GB:ABB03801.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.346048158145174 3.43863678461592 0.0056235786730383 1 3.30948785096779 16.1956411458624 0.346048158145174 0.0984271928115292
AT2G33450_at 11.1313064567880 11.2247732548843 10.4609457939933 10.4119270207626 10.9932525403622 10.7501722897565 11.3829942721668 11.2858465559389 11.0669113429616 11.3701962716553 11.3600074446970 11.5838053483131 11.0148144320414 10.9458334134003 11.8990137884543 11.0739014198696 10.6381993144092 11.1155747857302 11.1477717473844 0.0703139604624392 0.0687064945039454 0.0692592866739831 0.0711037541956353 0.0688782441304163 0.0722232723716197 0.068908230688485 0.0720207778288709 0.0773917240198004 0.0687811667848734 0.0687064945039454 0.0689223148204422 0.0687064945039454 0.075921737215071 0.0689600627248529 0.0698560869403027 0.088009241562295 0.0701622764763727 0.0706442587849955 2 2|0 +|/ 14180701 14181429 14180958 14180655 14181609 + gene protein_coding_gene FALSE TRUE AT2G33450.1 50S ribosomal protein L28, chloroplast (CL28) Identical to 50S ribosomal protein L28, chloroplast precursor (CL28) (RPL28) [Arabidopsis Thaliana] (GB:O22795;GB:Q8VY79); similar to 50S ribosomal protein L28, chloroplast precursor (CL28) (GB:P30956); contains InterPro domain Ribosomal protein L28; (InterPro:IPR001383) -0.296610883847632 -3.43802650079609 0.0056296043723952 1 3.3085435810934 22.1545790384307 -0.296610883847632 0.0488445277182604
AT4G24300_at 2.26478725682309 2.17614863884629 1.89146495576175 1.77524872016306 1.65030308327603 1.60071260356883 2.1517055042427 2.06509033775366 2.11199573149651 2.45590671673778 1.81868800790200 1.96246779940695 2.37878682026606 1.7361569595692 2.0359107316834 1.96824740604710 1.87165794429578 2.29440626717252 1.86634929774151 0.241768798974276 0.244865549965811 0.249155896013374 0.244447480912914 0.236161818652029 0.240623055137480 0.235572642001627 0.242003189788402 0.244491738805751 0.23605357134951 0.238171712490409 0.235572642001627 0.242812075096228 0.235572642001627 0.235572642001627 0.239566594390115 0.244854782889955 0.235572642001627 0.235572642001627 4 4|0 -|/ 12599727 12600181 12599970.667 12598990 12600223 - gene protein_coding_gene FALSE TRUE AT4G24300.1 peptidase similar to AESP (ARABIDOPSIS HOMOLOG OF SEPARASE), peptidase [Arabidopsis thaliana] (TAIR:AT4G22970.1); contains InterPro domain Peptidase C50, separase; (InterPro:IPR005314) -0.28573046683654 -3.43706458371232 0.00563911540292732 1 3.3070551781977 4.02345304957183 -0.28573046683654 0.0306284368269863
AT1G71180_at 5.76923543469362 5.3826105158733 5.26283477480829 5.14109614246921 4.85240336751116 5.04768568846282 5.45388764855458 5.46924731712925 5.60152067719112 6.18812262015715 5.88739343524574 5.32820770730238 5.3921015156827 5.67855053015188 5.65737287892688 5.60941015038905 5.72114090647401 5.62186510932151 5.65192551200851 0.167349207412729 0.174859457999213 0.177007565969348 0.187960415448837 0.17765259735894 0.180359833304791 0.175442592538757 0.176715997397890 0.171572048351342 0.170227336477458 0.176641616660429 0.171660701889872 0.167349207412729 0.183731191607756 0.175476249798708 0.168974710424879 0.174693508659080 0.170533140180582 0.171149406483925 1 1 + 26836440 26836904 26836664.909 26835997 26837371 + gene protein_coding_gene FALSE TRUE AT1G71180.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71170.1); similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Musa acuminata] (GB:ABF69966.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183) -0.32229561317432 -3.43620674549955 0.00564761124342193 1 3.30572775395727 11.0103058856740 -0.32229561317432 0.0779073235426
AT4G00355_at 9.61597269245848 9.70252050245192 9.92443850072888 9.91114096939642 10.2203312366348 9.85711988140005 9.18629556327329 9.25242467418297 9.48719669000196 9.11463901660424 9.32397918044155 9.09303471421938 9.52198147542702 9.46729216066165 8.93467023603852 9.58605517004485 9.40809251146294 9.36315142080888 9.16571559639491 0.100208059214937 0.101436196555806 0.0995383240633347 0.106138438140100 0.0984639872639278 0.104567270439614 0.100789280635313 0.101392760992707 0.101253075850799 0.106289002102177 0.101135822046080 0.0996678754737702 0.0984639872639278 0.099660708029146 0.102722986357197 0.100508193733400 0.105168338093404 0.0999652822769419 0.102786549751144 4 4 + 155425 156040 155703.818 154705 156376 + gene protein_coding_gene FALSE TRUE AT4G00355.1|AT4G00355.2|AT4G00355.3|AT4G00355.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45980.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80179.1) 0.310192981626384 3.4357892274578 0.00565175099711163 1 3.30508166154110 19.0053467740518 0.310192981626384 0.0656611666175682
AT4G32420_at 6.84793975262534 6.84137834791237 6.86250740596039 6.42157827099704 6.68088012168681 6.77654866688487 7.37252851232756 7.38314695506425 7.3480995042739 7.37728787456296 6.95901736477529 7.11354606401757 7.61205824272943 6.8319916238032 7.20716667573289 7.40743453851683 7.35565948885988 7.28983448381028 7.5978660735075 0.174876436496835 0.17274458918442 0.173260156524141 0.175550166647702 0.170990622546576 0.187505897897729 0.174110319644367 0.171845157388357 0.171735264549218 0.182211255146230 0.181448473086836 0.181978401584204 0.168402081761194 0.17711713203983 0.174006876817004 0.173818530250505 0.171492321879002 0.173218318121827 0.172978829464432 4 4 - 15647620 15648303 15648007.4 15647352 15652760 - gene protein_coding_gene FALSE TRUE AT4G32420.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G63400.1); similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin type [Medicago truncatula] (GB:ABE78987.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.322432849717109 -3.43539954836284 0.00565561753048919 1 3.30447863557268 14.2299000263801 -0.322432849717109 0.0781101306435525
AT3G14180_at 5.3686492766377 5.3888435807746 5.17905638794269 4.96660905669049 6.01250488209765 6.11416413782154 4.53501849553036 4.88465039678707 4.57519734363072 4.75578458902959 4.74923674802427 5.07744223658974 4.88392977359918 5.13713267072014 4.67936006121494 4.7415152024921 4.43192105845611 4.77003543152096 4.76384801914867 0.214458446020934 0.227440825852138 0.220102611391963 0.221408747985884 0.228941554051567 0.227852948207873 0.217410209327634 0.222169052919716 0.225849821800190 0.222721489006060 0.216682888646941 0.220377379258867 0.217509782832955 0.222026358441806 0.218944559368868 0.218095418593009 0.222077628517689 0.214458446020934 0.216715133906321 3 3 - 4707345 4707863 4707702.636 4707120 4708855 - gene protein_coding_gene FALSE TRUE AT3G14180.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G54060.1); similar to Os02g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047163.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); similar to Os05g0560600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056310.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.317169087964922 3.4347256489417 0.00566231060005328 1 3.30343575035657 10.0597361760003 0.317169087964922 0.073036192778722
AT1G12480_at 3.3134663494606 3.05132703514134 2.87280357761518 2.71621401674936 3.42020416918718 3.10235179809282 2.68501920897509 2.39634827245867 2.21706514288054 2.52806478551233 2.53497255272546 3.09886972259826 2.25817796895493 2.76494444448188 2.58274611609331 3.67835053772952 3.16013998179134 2.93234117716632 2.36156712754159 0.21878185359943 0.219368671466739 0.227701289989646 0.229526815891705 0.225999614658277 0.232732866694150 0.224329597762204 0.220715313165776 0.231227007973935 0.227016180794237 0.222278463686747 0.216977764276763 0.221396751618758 0.228798518940568 0.227216024667207 0.222095586010352 0.220739504022036 0.220100729190538 0.226121461604919 1 1|0 -|/ 4257483 4258022 4257774.6 4257266 4259298 - gene protein_coding_gene FALSE TRUE AT1G12480.1 C4-dicarboxylate transporter/malic acid transport family protein similar to C4-dicarboxylate transporter/malic acid transport family protein [Arabidopsis thaliana] (TAIR:AT5G24030.1); similar to C4-dicarboxylate transporter/malic acid transport family protein [Arabidopsis thaliana] (TAIR:AT4G27970.1); similar to Os04g0574700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053620.1); similar to C4-dicarboxylate transporter/malic acid transport protein [Medicago truncatula] (GB:ABE81484.1); contains InterPro domain C4-dicarboxylate transporter/malic acid transport protein; (InterPro:IPR004695) 0.336885983975007 3.43435781026699 0.00566596734505617 1 3.30286648982951 5.56732521912875 0.336885983975007 0.0911783540929786
AT1G43710_at 10.0490617677278 10.1903086677560 9.84700576224581 9.93873990598224 10.2086449587332 9.90983085470531 10.7340382584915 10.8530707227519 10.3726979717650 10.6194169517390 10.4730462389542 10.4331402635851 10.5566388233426 10.3481475472755 10.3308281433178 10.5058150786490 9.8987312462849 10.3737054378699 10.5062030298180 0.0878117547381756 0.0889984369665896 0.090813179632004 0.0878892910092958 0.0890842236220942 0.096655105199258 0.0914654267264056 0.0912115702497927 0.088989493183681 0.0878833266602581 0.0892396163786762 0.0878117547381756 0.0878117547381756 0.0925160491547965 0.091683860787833 0.0879744845380891 0.104114081074551 0.0899026936454537 0.0896835402598343 1 0|1 /|- 16488984 16489466 16489235.6 16488760 16490824 - gene protein_coding_gene FALSE TRUE AT1G43710.1 EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047064.1); similar to putative serine decarboxylase [Beta vulgaris] (GB:BAE07183.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129) -0.307498602064652 -3.43421339583234 0.00566740365459485 1 3.30264299354521 20.6485605698912 -0.307498602064652 0.0628320557534373
AT2G35620_at 4.53584564397008 4.47400116222851 3.65501061268037 3.48732638248093 3.93757018511688 3.94552607249294 4.35287942292687 4.83957683070004 4.2388593599244 4.64997448751276 6.56933728605727 6.78988277377739 5.86709312847285 6.21881538043626 6.8959069903843 5.58643601211581 4.97247040681001 5.16390316288785 4.7418670771525 0.226664110970979 0.228498863260299 0.227215424525469 0.228981502332843 0.229824204684250 0.235793047534654 0.232876417968581 0.226753591342768 0.238431166020137 0.230974200153014 0.231931044864659 0.230120465248816 0.228121559750391 0.247937121630737 0.235788130113845 0.227231762192822 0.232623863392166 0.228320729289423 0.226664110970979 2 2 - 14968321 14969008 14968654.091 14968019 14972438 - gene protein_coding_gene FALSE TRUE AT2G35620.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G31420.1); similar to Os03g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049659.1); similar to Os12g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067376.1); similar to SERK1 protein [Zea mays] (GB:CAC37638.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.335098107995454 3.43329710978065 0.00567652550672684 1 3.30122490536651 9.42924084781504 0.335098107995454 0.0897352100794036
AT2G18360_at 1.13362452167605 0.96498332919612 0.98343524916841 1.07547100612063 0.576751285248704 1.05195751108045 1.12250904319332 1.46417386574383 1.58645688568883 1.35269262501601 1.02067510200368 1.00595530136574 0.591250729597866 1.01772197565693 0.728005259387117 0.861674784335824 0.889245061764465 1.35106413935955 1.24701082596696 0.219622126327557 0.220658384053648 0.219215737808867 0.229286687143442 0.219469031348332 0.219985352225111 0.221357700638728 0.22210662694869 0.218699070535970 0.220246375604292 0.226871176800315 0.220719768729321 0.221963446149051 0.223408631608088 0.230227056230378 0.222565197961314 0.224811453250242 0.221958550675969 0.224041534346098 2 2|0 -|/ 7983934 7985926 7985244.556 7983794 7986459 - gene protein_coding_gene FALSE TRUE AT2G18360.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36610.1); similar to alpha/beta fold family protein [Lycopersicon esculentum] (GB:AAU03365.1); similar to Os02g0706900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047873.1); similar to Os01g0636400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043665.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.355803330877243 -3.43268035892446 0.00568267388696607 1 3.30027035266455 2.21090613796569 -0.355803330877243 0.106603111329872
AT3G60540_at 6.71994709851183 7.4888154060351 7.45562270978897 7.76194743390258 6.42896700574383 5.6907423613313 4.09804711445074 4.43464408352812 5.65427512038059 4.79994504124407 4.86170579695146 5.36677742376948 4.29426155700716 5.19256523323513 4.80129169398405 5.08480790173591 4.9082908079982 4.87284660263193 4.75177740487301 0.374072804843928 0.380886266322662 0.369781638953721 0.357383761920385 0.359242712500432 0.360044907415179 0.347862049082342 0.346844591195054 0.344067733961321 0.347941911382792 0.351012102887108 0.344067733961321 0.344359364467576 0.349492270153094 0.344067733961321 0.344067733961321 0.367254807089043 0.350363287552884 0.349049174506345 3 3 - 22386119 22386328 22386209.273 22385938 22386840 - gene protein_coding_gene FALSE TRUE AT3G60540.1|AT3G60540.2 sec61beta family protein similar to SEC61 BETA (suppressors of secretion-defective 61 Beta) [Arabidopsis thaliana] (TAIR:AT2G45070.4); similar to Sec61beta [Medicago truncatula] (GB:ABE79095.1); contains InterPro domain Sec61beta; (InterPro:IPR005609) 0.501554486862577 3.43222418232954 0.00568722589682348 1 3.29956430222915 11.2555837679933 0.501554486862577 0.200569269553493
AT1G23960_at 8.83627980613671 8.80642798861988 9.10205562082809 9.06996916092334 9.67144191708556 9.15520264235728 8.75266714566039 8.37189931195983 8.50470401786633 8.5194991225572 8.75291830259292 8.56756909203695 8.69200104353533 8.89840574926536 8.58490979118092 8.73273379454148 8.97230107609645 8.72050133742586 8.6985926173276 0.128472282698429 0.122526910957094 0.125874764042999 0.126158668463328 0.128017520432956 0.126891398460612 0.127933813853190 0.131749057357728 0.136756416045321 0.131614995782596 0.131784534520376 0.126401423081751 0.121702821195880 0.122755050404987 0.132033521009565 0.122049941543587 0.130795987639524 0.129767835622523 0.129557792743260 1 1|0 -|/ 8478626 8479437 8478943 8478396 8480305 - gene protein_coding_gene FALSE TRUE AT1G23960.1|AT1G23960.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23970.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) 0.361875521477530 3.43208883846975 0.00568857715980656 1 3.29935481950535 17.6279593371554 0.361875521477530 0.111268605004677
AT1G04420_at 9.11736720881548 8.85835389765663 8.45672338808147 8.35740328502007 8.86467505304484 8.65899724808724 9.66129102718135 9.45664086640834 9.49350386703194 9.57368811854007 9.49597976522132 9.67289154668431 9.18232801438288 9.63314834651508 9.85976367174042 9.63211773510342 9.34341295349227 9.55290597767315 9.38602382822515 0.113908611530571 0.111508350891891 0.116542660363791 0.125170427353528 0.108401965908792 0.119286552739562 0.110263361838007 0.109376858681605 0.118834027078994 0.112358610652891 0.111428123545166 0.107149130293196 0.116597098265276 0.110476180741946 0.108777275229866 0.107149130293196 0.111824070016609 0.113485386890115 0.113845913180132 1 1|0 +|/ 1192801 1193646 1193410 1191607 1193883 + gene protein_coding_gene FALSE TRUE AT1G04420.1 aldo/keto reductase family protein similar to KAB1 (POTASSIUM CHANNEL BETA SUBUNIT), potassium channel [Arabidopsis thaliana] (TAIR:AT1G04690.1); similar to Aldo/keto reductase [Medicago truncatula] (GB:ABE91742.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.313400138185580 -3.43173827985329 0.00569207864136189 1 3.29881222425348 18.4444183830956 -0.313400138185580 0.0694674758812776
AT3G16060_at 6.1683296666339 6.37543632106605 5.93074574900375 5.8194139069808 6.56255063014683 6.20133762980083 7.31670584917231 7.13100247780343 6.68276165639584 6.7833800455702 6.74618336459113 6.86656412194308 6.42026874836818 6.64164036941022 6.92439837262947 6.52033497481603 6.34892135697168 7.14623504553336 6.73293450692006 0.186233924062040 0.175840581646931 0.176420853496396 0.170390463780693 0.173053348180404 0.188609511091291 0.179026171554261 0.176940323284378 0.188431574475093 0.169633019110694 0.175504949873751 0.185136457087941 0.176456144491519 0.184738802128466 0.190196642384398 0.173410592592825 0.181569220130849 0.179707597881576 0.175914294650593 3 3 + 5450474 5451175 5450804.455 5447349 5451533 + gene protein_coding_gene FALSE TRUE AT3G16060.1 kinesin motor family protein similar to ATKINESIN-13A/KINESIN-13A, microtubule motor [Arabidopsis thaliana] (TAIR:AT3G16630.2); similar to BY-2 kinesin-like protein 10 [Nicotiana tabacum] (GB:BAB40710.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.325281854182505 -3.43051836649896 0.00570428072325374 1 3.29692396033032 13.1556121274485 -0.325281854182505 0.081215665338737
AT3G13560_at 5.88802572465369 6.36381436261587 6.2380785814508 5.8492895839401 4.61082819345679 4.69341026504678 4.02703060414239 4.30264128218486 3.99769659211194 3.81386376240708 4.48839428823792 5.33789100318933 3.81492990137600 4.40286890984376 5.75346708122886 3.92222191458654 3.52825609592914 4.38806834682364 3.9397560120383 0.233777331459259 0.233601222729702 0.228471871121316 0.229233384560455 0.236068170828880 0.238340222665103 0.231275545133920 0.233337538480031 0.240961916467941 0.236560241532863 0.233473646769326 0.234590128382579 0.234774009709048 0.241663025790671 0.229535151573610 0.229022109123188 0.251229544046597 0.231308678785425 0.233283277774905 3 3 - 4425511 4426154 4425874.182 4425234 4428186 - gene protein_coding_gene FALSE TRUE AT3G13560.1|AT3G13560.2|AT3G13560.3 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 4) ((1->3)-beta-glucanase 4) (Beta- 1,3-endoglucanase 4) (Beta-1,3-glucanase 4) [Arabidopsis Thaliana] (GB:Q94CD8;GB:Q9LJD6); similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.1); similar to Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold [Medicago truncatula] (GB:ABE78694.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.369965199853603 3.43005666903461 0.005708905805616 1 3.2962092816221 9.43244864877191 0.369965199853603 0.117411277512818
AT2G26480_at 2.14127403109124 1.78670923135940 3.03242889350732 2.53710355075247 1.63414630298657 1.61686314759577 1.49123519924236 1.65044807547727 1.56057024884620 1.56375964762567 1.89736001174988 1.976526526918 1.90244632257181 1.70320233256717 2.03442231621638 1.45136892404532 2.1531181831687 1.96444707679762 1.69374948545177 0.178242356138695 0.178322086263019 0.176402469359543 0.190577254401364 0.178366427719611 0.174714365228343 0.178056274344394 0.179749731509354 0.186645125878546 0.180403586364668 0.182245987688300 0.179718344918591 0.185716048864144 0.174714365228343 0.177039081278305 0.177483724263171 0.186945772628253 0.178588990832156 0.177407830905536 2 2 + 11272088 11272584 11272333.636 11271041 11272762 + gene protein_coding_gene FALSE TRUE AT2G26480.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46660.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.358526920265553 3.42879484918349 0.00572156578234031 1 3.29425597325709 3.73197001519933 0.358526920265553 0.108998454902783
AT1G78620_at 8.4914430940533 8.51735272161705 8.37468407241808 8.70848819021062 8.70144237000612 7.97715848405542 8.01876136276553 8.1483395221393 8.3081843058152 7.3875898115502 8.01138767373545 8.36485337605872 7.91461019519655 8.52092823376222 8.23128368403917 8.20356860915961 8.03408582578206 8.67286048431222 7.0630780809838 0.171472435567134 0.171472435567134 0.181426796947998 0.181952419265456 0.17387433961797 0.188563952782132 0.180550672196975 0.182733607830543 0.196528425351275 0.184697472974005 0.182311291791971 0.176709589169622 0.174451588010592 0.193259922616511 0.186653537174136 0.180417841625603 0.19664235536791 0.171472435567134 0.205480179609712 1 0|1 /|- 29579192 29579777 29579608.625 29577764 29580687 - gene protein_coding_gene FALSE TRUE AT1G78620.1|AT1G78620.2 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G19930.1); similar to hypothetical protein tlr2384 [Thermosynechococcus elongatus BP-1] (GB:NP_683174.1); similar to Os01g0729100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044132.1); contains InterPro domain Protein of unknown function DUF92, transmembrane; (InterPro:IPR002794)|similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53099.1); similar to hypothetical protein tlr2384 [Thermosynechococcus elongatus BP-1] (GB:NP_683174.1); similar to Os01g0729100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044132.1); contains InterPro domain Protein of unknown function DUF92, transmembrane; (InterPro:IPR002794) 0.402191149084058 3.42861716816321 0.00572335078558338 1 3.2939809108348 16.2824493903443 0.402191149084058 0.139893492446954
AT4G20170_at 5.24538867522199 6.25593970636678 5.6813896704866 6.14561816531285 5.67522399205081 5.68621971352399 7.7966474711818 8.83970487404092 6.55459699862118 6.85996812464399 7.26826279487709 7.1363026919542 6.88820239371544 7.60803056183905 5.96615425221901 7.71204642293759 6.13871767499228 6.9249636048115 7.42846764525441 0.290601958867449 0.289754769582593 0.293600705584155 0.299343584757677 0.2908988309941 0.312477897826153 0.289754769582593 0.309891065718031 0.293217812846657 0.289754769582593 0.291514410279057 0.289754769582593 0.298396639780394 0.315090081659216 0.296087871088574 0.291669758684181 0.289754769582593 0.301347137759547 0.294650574687806 4 4 + 10898513 10898767 10898656.375 10896689 10899151 + gene protein_coding_gene FALSE TRUE AT4G20170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44670.1); similar to Os06g0328800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057533.1); similar to Os02g0712500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047907.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72474.1); contains InterPro domain Protein of unknown function DUF23; (InterPro:IPR008166) -0.614824918098782 -3.42840334257069 0.00572549965806346 1 3.29364989065934 13.3672728531106 -0.614824918098782 0.263862180109214
AT1G75950_at 11.8316000100159 11.8514784334681 11.9714372934825 11.9832571177707 12.1350200619853 11.9750967303972 11.6894542250888 11.8208468302916 11.4925741107311 11.3989152954833 11.9788351308080 11.7323197189565 11.8891012553205 11.6558402914907 11.8877015611173 11.7462845975562 11.5857356898119 11.7133788439596 11.3568099750227 0.0638818892888052 0.0646902778525815 0.0625415834837667 0.0648095673433686 0.067559764213354 0.0647961178329213 0.0625460271388874 0.064428564525849 0.070780177892456 0.0633784264994962 0.0635181166284201 0.0641150360806672 0.0619512388526627 0.0650874535990676 0.0627304161457822 0.0619512388526627 0.0690195567671233 0.0656661429842902 0.0619512388526627 1 1|0 +|/ 28520439 28521025 28520638.1 28520209 28521360 + gene protein_coding_gene FALSE TRUE AT1G75950.1 SKP1 (ARABIDOPSIS SKP1 HOMOLOGUE); ubiquitin-protein ligase SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. Identical to SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1) (SKP1A) [Arabidopsis Thaliana] (GB:Q39255;GB:P92992); similar to ASK2 (ARABIDOPSIS SKP1-LIKE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42190.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.287703884287365 3.42805766163976 0.00572897538000803 1 3.29311473920215 23.5021485527492 0.287703884287365 0.0360412455242931
AT2G21850_at 2.19898040362186 2.16155674537666 1.46130144637295 1.6920477878872 1.08849883367429 0.902605498835711 1.04801634224662 0.528223155986454 1.47129395990735 1.52663738458015 0.977491916745661 1.18773197516150 1.21309008075557 1.04139775649824 1.29822412600376 0.828176363302719 1.26713964387740 1.34814736412335 1.95232689915816 0.210438602171072 0.217524156779177 0.202913336998957 0.206535633829334 0.200984426761127 0.208092253589694 0.203776919941266 0.207241174141237 0.206301498759111 0.209623682974119 0.222641295740309 0.200984426761127 0.214498083925525 0.202490186509934 0.200984426761127 0.200984426761127 0.200984426761127 0.200984426761127 0.208278255220608 2 2|0 +|/ 9324459 9325218 9324676.5 9322298 9325318 + gene protein_coding_gene FALSE TRUE AT2G21850.1 protein binding / zinc ion binding similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G21830.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21840.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.351495974011028 -3.42656115472199 0.00574404729148894 1 3.29079787049251 2.78278426901209 -0.351495974011028 0.103744169847403
AT4G26910_at 9.41138235448173 9.30969734607752 9.5410034501499 9.48514691991625 9.29109172410873 8.82602817553143 8.08228084936824 8.12645985578302 8.15498183816635 7.77248621929793 7.82529339339294 8.13773295697221 7.8371139203037 7.8904911763615 7.58118070287997 7.8525676066703 7.73459497119642 8.13194201152423 7.39167884011526 0.173922909866400 0.175851585548979 0.171499290706197 0.172853868237671 0.174687047834693 0.171821292202936 0.176181021134523 0.162601935214411 0.181616481846797 0.173501747189042 0.177593559982137 0.170042297326370 0.170304838055053 0.167790409560091 0.174242176019932 0.164807206759258 0.169781781763222 0.177852275193512 0.181219608668384 4 4|0 -|/ 13520143 13520959 13520342 13519817 13523231 - gene protein_coding_gene FALSE TRUE AT4G26910.1|AT4G26910.2|AT4G26910.3 2-oxoacid dehydrogenase family protein similar to 2-oxoacid dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G55070.1); similar to Os04g0394200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052652.1); similar to putative 2-oxoglutarate dehydrogenase E2 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD22992.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide succinyltransferase; (InterPro:IPR006255); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078)|similar to 2-oxoacid dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G55070.1); similar to Os04g0394200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052652.1); similar to Os02g0514700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046950.1); similar to putative 2-oxoglutarate dehydrogenase E2 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD22992.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide succinyltransferase; (InterPro:IPR006255); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.327089046275884 3.42565266511899 0.00575321686853404 1 3.28939127066965 16.8325931135634 0.327089046275884 0.083299477599726
AT3G55560_at 5.6357051298093 5.93019202202794 5.2821868436693 5.36317815377751 6.17253896288625 6.28197936825611 4.37851170456082 4.73018622628541 4.50868964926247 5.14395267260424 5.00326157559658 4.71865542688568 5.30773636226082 5.38176569619037 4.4927958232786 4.43726160780854 5.2755283302518 4.85302962991321 5.00880782626054 0.232627760754614 0.233877522540614 0.235309689000249 0.230694274624779 0.235188632733527 0.246971554804235 0.236724647409039 0.232886757314108 0.248792305894682 0.232405748046171 0.230694274624779 0.233634634335752 0.235055627368026 0.235586066152821 0.233398337026008 0.235653344015535 0.230694274624779 0.2360143821152 0.230694274624779 3 3 - 20615953 20616456 20616226.636 20615595 20617359 - gene protein_coding_gene FALSE TRUE AT3G55560.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G14465.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE83497.1); similar to Os03g0270000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049682.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.326463159311936 3.42481249779833 0.0057617102076578 1 3.2880903924842 10.3822619793586 0.326463159311936 0.0828016011056464
AT1G74960_at 9.83318699194374 9.70864281219206 9.77975993882234 9.55318532896253 10.0681285574583 9.8818389094717 10.5671418920715 10.3467684790813 10.6363059174965 10.4047818151875 10.4049632459618 10.1359629761783 10.1688281978640 10.1763338690810 10.0603901639119 10.1416100085291 9.90349474432105 10.0135247669492 10.3175667455487 0.0798124817080857 0.0758773424144859 0.0786565961523136 0.081998442937727 0.0742429494600789 0.0792402095580187 0.0793829264624975 0.0789887493524361 0.0854650012971767 0.0793488685125287 0.0742429494600789 0.0744143695568843 0.0750965662019858 0.0777563994869612 0.0744137215605064 0.0742429494600789 0.0834424540884111 0.0863682002977087 0.0761405547559446 1 0|1 /|- 28156233 28157099 28156676.556 28155639 28159888 - gene protein_coding_gene FALSE TRUE AT1G74960.1|AT1G74960.2 FAB1 (FATTY ACID BIOSYNTHESIS 1); fatty-acid synthase Encodes a nuclear encoded beta-ketoacyl-ACP synthetase involved in fatty acid desaturation and required for cold-tolerance at 2 degrees Celsius. similar to KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT5G46290.1); similar to 3-ketoacyl-ACP synthase [Cuphea pulcherrima] (GB:AAC68860.1); similar to beta-ketoacyl-ACP synthase II [Cuphea wrightii] (GB:AAB37271.1); similar to beta-ketoacyl-ACP synthetase 2 [Brassica napus] (GB:AAF61739.1); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794) -0.310226594810734 -3.42197247933715 0.00579051551083975 1 3.28369260223502 20.256593275089 -0.310226594810734 0.0670496002931243
AT1G69030_at 5.40802780237095 5.37528665251776 4.52325997218225 4.11243208453968 4.71046981568256 4.73131063858594 5.98448854445707 5.82860653794966 5.27591765328615 5.6487657322731 6.45779045784287 6.77040211492819 5.28495870760272 5.29538540466097 6.80084545346178 5.70062775957058 4.58345733766685 6.01456674781719 5.19170267439844 0.225246546191109 0.215231628648189 0.219937464270872 0.223219035445211 0.222686896843358 0.232387985360149 0.224972893729147 0.227167595099740 0.232688131513697 0.223182662261355 0.218957647541785 0.221362380153554 0.217645855967424 0.225456318662078 0.223582213110761 0.221465082550895 0.231735735748709 0.215231628648189 0.225556353919734 1 1|0 -|/ 25951246 25952487 25951981.111 25950928 25952925 - gene protein_coding_gene FALSE TRUE AT1G69030.1 similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26300.1); similar to Os04g0662000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054153.1); similar to Os02g0726400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047990.1); contains InterPro domain BSD; (InterPro:IPR005607) -0.319179347642461 -3.4203294536471 0.00580724748885017 1 3.28114806202908 10.7020517233340 -0.319179347642461 0.0763375244617166
AT3G44340_at 8.3839630282041 8.4722655759196 8.59758804557283 8.67786002384589 8.42603363698345 8.185894735118 8.37172616466323 8.10495717264757 7.68272435046842 7.52609570350494 8.0010042687762 8.27140406945335 7.81285946697427 7.85666071101616 8.34265821616115 7.80576362826113 7.96534732254064 8.06647638167596 7.4017870362128 0.176733626867023 0.174559289323872 0.180362634308844 0.171048555498804 0.178230962331182 0.192927499635527 0.174036119650514 0.174065446995677 0.184855563377112 0.174577082809529 0.176595233228253 0.172083556924437 0.172175004280881 0.181655742415875 0.177403031487105 0.173871611293672 0.180370721924478 0.174519556601591 0.185365881362848 3 0|3 /|- 16022921 16024016 16023558 16022608 16031241 - gene protein_coding_gene FALSE TRUE AT3G44340.1|AT3G44340.2 CEF (CLONE EIGHTY-FOUR); transporter homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions. Identical to Protein transport protein Sec24-like CEF (CEF) [Arabidopsis Thaliana] (GB:Q9M291); similar to sec23/sec24 transport protein-related [Arabidopsis thaliana] (TAIR:AT4G32640.1); similar to Protein transport protein Sec24-like CEF, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93724.1); similar to retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97661.1); similar to Vesicle coat complex COPII, subunit SEC24/subunit SFB2 (ISS) [Ostreococcus tauri] (GB:CAL55868.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.308509426533362 3.4191963824253 0.00581881513427968 1 3.27939315533661 16.1786064419540 0.308509426533362 0.0654579849695644
AT1G10360_at 9.01169856032021 9.0328156925884 8.80797219181895 8.60918086972722 8.94817734621884 9.0737993713611 9.73143402069203 9.75434233679503 10.1731336268483 10.0408925709734 10.2490981744976 10.1730383555855 10.1020160095593 9.9900430744831 10.1920005261819 10.1324876965560 9.80864894622262 10.0999446491638 10.2364023801230 0.115341538118556 0.108350895606425 0.119978022157445 0.119934840694122 0.114446616343007 0.114671440258855 0.115006638107077 0.106921302271777 0.114481305359235 0.104523199255399 0.10763956580107 0.107198483166742 0.106251382667966 0.120568150032190 0.109472259829182 0.109056554194515 0.108039998466316 0.114280146105160 0.105803654773844 1 1 - 3395741 3396660 3396188.182 3395560 3396851 - gene protein_coding_gene FALSE TRUE AT1G10360.1 ATGSTU18 (GLUTATHIONE S-TRANSFERASE 29); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU17/ERD9/GST30/GST30B (EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G10370.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.289761694050526 -3.41830048628039 0.00582797814802438 1 3.27800551242258 19.2429538178633 -0.289761694050526 0.0410506699841232
AT3G49850_at 3.94821762274907 4.00429258641219 4.50292552928628 4.27645804952801 4.61350942418845 4.79359577940729 4.39054388455108 4.47369346144726 3.26270391916839 3.85137522201715 3.95591900097148 3.89227665088555 3.59442277441613 4.01127810069637 3.37182037505669 4.14422660608173 4.28815034695186 3.41874218907717 3.62931370294564 0.217737960399756 0.224507148441959 0.212571998107538 0.214338619290357 0.2172020461394 0.214341874448006 0.225214975090128 0.21710357496438 0.232054016067008 0.218401257478230 0.219512286485208 0.212087230698389 0.217439219429433 0.222665296693920 0.217369490392233 0.221217531489547 0.217258778548304 0.215531665661587 0.216891675350391 3 3|0 +|/ 18500811 18501692 18501272.9 18500019 18501981 + gene protein_coding_gene FALSE TRUE AT3G49850.1 ATTRB3/TRB3 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding / transcription factor similar to ATTRB2/TRB2 (TELOMERE REPEAT BINDING FACTOR 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G67580.2); similar to MYBR6 [Malus x domestica] (GB:AAZ20445.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.297954432143002 3.41810993814089 0.00582992893538871 1 3.27771036622551 8.08327226897663 0.297954432143002 0.0529945453840357
AT1G75190_at 7.24772275218731 7.05317070870166 6.22763742959050 5.91477369374682 6.94035439911838 6.85604360145642 5.850403890143 6.13477366705559 6.28339855040541 6.15919222253113 5.76747060138452 5.74745627553356 6.35934554245251 5.97105700775017 5.25239178480760 5.60432109110383 5.90331469203727 5.5646213571103 6.55927162768954 0.200640312841126 0.19565977421548 0.196733776507278 0.197132323814956 0.201607866569866 0.191554039223989 0.186725825717425 0.197682404755946 0.196198733057745 0.194116496609308 0.188507432892752 0.192395243409051 0.186274045753316 0.187126436242193 0.208783956381479 0.186393862567757 0.195584575202145 0.191402477637605 0.189254008919236 1 1 + 28223288 28223629 28223458.909 28223043 28223888 + gene protein_coding_gene FALSE TRUE AT1G75190.1|AT1G75190.2 |unknown protein similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT4G26630.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42190.1); similar to PREDICTED: hypothetical protein [Mus musculus] (GB:XP_001004948.1)| -0.32476115653171 -3.41779411991915 0.00583316368227903 1 3.27722117861533 12.5807107315322 -0.32476115653171 0.0818511415257689
AT1G14000_at 9.49747518690137 9.72703403562615 9.94150435523158 9.8581515894593 10.0592811510939 9.68892739788676 9.60179668349425 9.56432616218837 9.63930605572864 9.38639051924317 9.9668022534014 9.79998543697498 9.6414798264342 9.63920446833697 9.28075574117024 9.7834779023569 9.68467408957571 9.59334637752604 8.94588595460907 0.101650857006806 0.0988851148268388 0.102234229178155 0.101702452311966 0.101304152664165 0.104904685994248 0.102256383329205 0.102759081688841 0.107484456501012 0.108395145784446 0.104215060919693 0.0988851148268388 0.106478907474691 0.107934960351872 0.100108819184143 0.099024105774275 0.106264031508713 0.103613428790639 0.121347230368024 1 1|0 +|/ 4798998 4800012 4799545.8 4797355 4800280 + gene protein_coding_gene FALSE TRUE AT1G14000.1 protein kinase family protein / ankyrin repeat family protein similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G58760.1); similar to putative ankyrin-kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC79897.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06431.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.319581512571891 3.41681702552884 0.00584318315763882 1 3.27570765380062 19.2411003728181 0.319581512571891 0.0770454622169841
AT2G42770_at 8.44786819509074 8.6640150703764 8.26216866317989 8.15751274460622 8.33929748329524 7.9781635805563 9.28373497570593 9.05429888191003 8.52787638733834 8.4621002062096 8.39866960863 8.5861022432509 8.52472214872378 8.3972989726441 8.60596787245642 8.71320118340928 8.28711596503031 8.43918260539665 8.4256183236515 0.117092975891813 0.114095349193345 0.127830154463916 0.12813386746985 0.117231299965838 0.129945294624709 0.118087684711728 0.114095349193345 0.125832612777581 0.116555432666427 0.120510295409636 0.115267154814419 0.121886810545072 0.127693009324354 0.116313331466329 0.121505486610025 0.133394901847443 0.119493457803859 0.115141224796184 2 2|0 -|/ 17805771 17806843 17806336.6 17805362 17807083 - gene protein_coding_gene FALSE TRUE AT2G42770.1 peroxisomal membrane 22 kDa family protein similar to peroxisomal membrane 22 kDa family protein [Arabidopsis thaliana] (TAIR:AT5G43140.1); similar to Mpv17/PMP22 [Medicago truncatula] (GB:ABE89007.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) -0.328013030159245 -3.41674091557036 0.00584396435632193 1 3.27558975577692 17.0063312230113 -0.328013030159245 0.0849081293202084
AT4G24770_at 10.8480270543519 10.9769958454553 10.4256090335974 10.457134643404 10.7311379344885 10.8283524468887 11.3027300068789 11.3035481314458 11.5264100869387 11.7103343071257 11.7017919502389 11.7792990894729 11.5888882906353 11.4638627509043 11.9326033837897 11.8805412332655 11.3423456176291 11.3464341651108 11.858194118192 0.0767950668777288 0.078467353502241 0.0761953965134116 0.0750765803758443 0.0759833913411385 0.079859827612363 0.0808134171175697 0.0761720996118365 0.0859751618582431 0.0775591415339363 0.0751970564542171 0.0762277782292778 0.0740113748588465 0.0794697296481326 0.0799713442804827 0.0758409213373502 0.0795459727381173 0.079188431385585 0.0759442267387167 4 4|0 -|/ 12766247 12767526 12766879.5 12766040 12768050 - gene protein_coding_gene FALSE TRUE AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding encodes a chloroplast RNA-binding protein Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) (RBP31) [Arabidopsis Thaliana] (GB:Q04836;GB:P92871;GB:Q03394;GB:Q43350); similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to RNA-binding protein 2 (GB:AAA18379.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.283054386113160 -3.41644844868145 0.00584696725566334 1 3.27513670597318 22.5230837108386 -0.283054386113160 0.0284769028696258
AT1G14300_at 4.74396188146721 5.00104084558893 4.17921413346903 4.5245738470187 5.03949882922658 4.39861919747406 4.4991621242101 5.11920021568552 4.44403607923984 3.90410283661387 3.37685501819167 3.10096544843945 3.62729012107558 3.37680551204841 3.52301628710958 3.55284618064845 4.44566726152804 3.76824159782 4.22579388683211 0.261353434598853 0.259209111968025 0.268561292660228 0.262788138870524 0.259209111968025 0.264839175897368 0.261065233400089 0.266916161419953 0.280591516568011 0.259209111968025 0.265942599661902 0.261831145007189 0.265152391394739 0.270211233154096 0.266463679368699 0.262955905354674 0.263107437145778 0.267408713179461 0.267242880323994 1 1|0 -|/ 4882816 4883933 4883208.556 4882371 4884786 - gene protein_coding_gene FALSE TRUE AT1G14300.1 binding similar to Domain of unknown function (DUF383), putative [Medicago truncatula] (GB:ABE90778.1); contains InterPro domain Protein of unknown function DUF383; (InterPro:IPR007205); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein of unknown function DUF384; (InterPro:IPR007206) -0.450107385405903 -3.41609112036909 0.00585063826470011 1 3.27458317226516 8.58204481556064 -0.450107385405903 0.171362295316416
AT1G10850_at 1.63317859142283 1.68345188172319 1.39812246956323 1.48494799661302 1.18554397277112 1.80083223577924 2.40694672078815 2.63843308533361 2.80183271268188 2.50554719193219 2.71918639299899 3.02795412813696 2.79244480956786 2.30051067491532 3.12126599074657 2.50175364464686 2.29918000488639 2.35997423060451 2.93541000020811 0.209370444938542 0.207564034869144 0.229234874418005 0.216604011056227 0.207564034869144 0.224155594652739 0.21077378598066 0.213485878617232 0.219090844653061 0.217971544550310 0.212722210664736 0.213947215610313 0.219258016575215 0.207564034869144 0.213740563714748 0.212583135510874 0.213898549611091 0.226998085801042 0.222772691009197 1 1 + 3613752 3614251 3613945 3611749 3614613 + gene protein_coding_gene FALSE TRUE AT1G10850.1 ATP binding / protein serine/threonine kinase similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G60630.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82080.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.365226900756545 -3.41547249837795 0.00585699925624514 1 3.27362484661995 4.47287230400113 -0.365226900756545 0.115082217931376
AT2G27290_at 9.86595534206942 10.0699932417068 10.1576249189662 10.1311000048070 10.4681797758384 10.2231060099609 10.2732525830372 10.1589101735421 10.2535117567113 10.0845391450715 10.5421889682830 10.5184377781043 10.3773522455751 10.5523131984702 10.3535083647317 10.7618632352214 10.5406864343804 10.6666599262118 9.92427483552546 0.119592347448634 0.111671885911864 0.119395443778533 0.112599483486817 0.114296595044623 0.117734430421906 0.117300343367899 0.114570011947016 0.123015745958402 0.120651858562736 0.111671885911864 0.114704630879656 0.113268692040849 0.114580988088518 0.113123478179497 0.11251183286952 0.115371667478743 0.113792362379851 0.120961336122262 2 2 - 11685708 11686813 11686174.818 11685478 11686875 - gene protein_coding_gene FALSE TRUE AT2G27290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20940.1); similar to Os04g0416000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052762.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL57011.1); similar to OSIGBa0092M08.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67592.1); contains InterPro domain Protein of unknown function DUF1279; (InterPro:IPR009688) 0.302329599370196 3.41504796144640 0.00586136866445772 1 3.27296716591809 20.4817993468952 0.302329599370196 0.0588055873602419
AT3G14090_at 7.1879928435384 7.39315422441285 7.33510994181233 7.68308224401405 7.84487500603304 7.66718492189426 6.79753113079936 7.19428953854254 6.46162924964686 6.21075874048662 6.71840722299074 6.4926466883045 6.73750205632667 7.0863592659907 6.02446911617133 6.83786556900245 6.7894715797915 5.84503741478075 6.40105907423083 0.239451992928847 0.242770137224831 0.239432750342425 0.244699063670655 0.241597113527389 0.254819007695292 0.241571742761119 0.249414275877812 0.255129770621983 0.231682278166990 0.241077723159115 0.234482655483479 0.238941806478964 0.233094753867348 0.242699352384576 0.240614275589079 0.240031023693035 0.236623458258428 0.231067005300778 3 3 - 4669517 4670061 4669747 4669260 4671582 - gene protein_coding_gene FALSE TRUE AT3G14090.1 ATEXO70D3 (exocyst subunit EXO70 family protein D3); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70D1 (exocyst subunit EXO70 family protein D1), protein binding [Arabidopsis thaliana] (TAIR:AT1G72470.1); similar to ATEXO70D2 (exocyst subunit EXO70 family protein D2), protein binding [Arabidopsis thaliana] (TAIR:AT1G54090.1); similar to putative leucine zipper protein [Oryza sativa (japonica cultivar-group)] (GB:BAB86177.1); similar to Os08g0455700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061962.1); similar to Os09g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063276.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.348987635081764 3.41502909560683 0.00586156291246126 1 3.27293793914957 13.8500452575265 0.348987635081764 0.102696959232960
AT2G37870_at 1.53011135614923 1.81109352696657 2.5407874336464 2.45713066820200 2.19358936285797 1.73684668852994 2.52793915321957 2.48529782520962 1.7153540153271 1.99939543923748 2.54656735490745 2.46739287733435 2.71947545585889 2.88675434624397 2.42767853221451 2.1167888103317 2.75872420518801 3.08036396943427 2.56096936011542 0.257983679471106 0.245954929524337 0.255908434519573 0.258877895662163 0.245954929524337 0.256094668475492 0.254421645555601 0.254358917650415 0.262650773498573 0.245954929524337 0.252124178125922 0.250864119864648 0.254198874289034 0.248809636726362 0.253166593275511 0.245954929524337 0.254579735174933 0.250817883957235 0.247218788153898 2 2 + 15866376 15866665 15866500.727 15866317 15866985 + gene protein_coding_gene FALSE TRUE AT2G37870.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT5G05960.1); similar to Os01g0849000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044807.1); similar to Os04g0415800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052760.1); similar to hypothetical protein [Plantago major] (GB:CAH59408.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.338519997650988 3.4145206323685 0.00586680067850176 1 3.27215022215852 4.51903673459723 0.338519997650988 0.0942125846307716
AT2G01130_at 3.07841969004142 3.09434866822379 3.33645318665422 3.20234044684639 3.42802672176587 2.82613665313150 3.05579462176877 2.81796009042121 2.49730306550429 2.01643828310907 2.68785802142766 2.55480929510734 3.03152945799936 3.12977169274849 2.54699890276036 2.91648183094039 2.81283876140754 2.86618986143641 2.31573463236553 0.186668492941179 0.181548523425631 0.194371076286332 0.183261208262841 0.179305036264794 0.191065715400171 0.18117428214455 0.180419042352183 0.181219259339748 0.179134000029805 0.181805079033540 0.180677278443422 0.178661966594234 0.185075169536843 0.196344328266263 0.182596938332843 0.190599775066129 0.182483606240470 0.181975900392713 2 2|0 -|/ 90684 91276 90972.667 88846 94659 - gene protein_coding_gene FALSE TRUE AT2G01130.1 ATP binding / helicase/ nucleic acid binding similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G04895.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35920.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48650.1); similar to putative helicase [Oryza sativa] (GB:AAL58955.1); similar to putative DEAD/H box polypeptide 36 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52491.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98878.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) 0.364213109402254 3.41447533784392 0.00586726749763833 1 3.27208005035327 5.65233587067568 0.364213109402254 0.114409536008384
AT4G38380_at 3.302950380698 2.94823710940021 3.46824973514244 3.60421786659482 3.27337102760014 3.88415800883254 2.82350636861156 3.21451415796428 2.43589288643662 2.96352838837673 2.90403920068596 2.76865192666277 2.80608482211920 3.05498501489036 3.06665440162605 2.74658840514547 3.44423653442142 3.44656572959854 2.72610880872578 0.233734820142457 0.231286490196499 0.235158364127815 0.234459113890124 0.241133627943368 0.243747425791098 0.230649328569618 0.235213759779079 0.230649328569618 0.241018163411720 0.246513746921461 0.237033069122534 0.243410790770569 0.235689074187926 0.259663136724747 0.236995273194590 0.235485336866072 0.230649328569618 0.239460204724095 4 4|0 -|/ 17972129 17973202 17972779.333 17972122 17975094 - gene protein_coding_gene FALSE TRUE AT4G38380.1 MATE efflux protein-related similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G38330.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46475.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.403206440960657 3.41442585522616 0.00586777752403522 1 3.27200339002286 6.18401847297555 0.403206440960657 0.141678476700469
AT3G51440_at 7.22509791644178 7.52171296647579 7.75922604117282 7.9526408014924 4.49016582502076 4.9952803109312 1.94993856740448 1.73499415842210 3.74963317301762 2.67661564557196 2.09168086919996 2.18362770958360 1.90204395224508 2.05008624145501 1.77463377408800 1.96132301466615 1.82587866624618 2.27514965311373 2.49814444389724 0.286402246361892 0.287391823381399 0.293870396777659 0.297542258257948 0.287006453517120 0.292377491680368 0.280842113102815 0.278462716308611 0.285415111163334 0.278478366918567 0.281094554013849 0.279554999083425 0.282056590295459 0.278126427630788 0.284177866335193 0.278126427630788 0.281339405248319 0.279713489220903 0.278126427630788 3 3|0 +|/ 19100702 19101473 19101187.3 19100060 19101618 + gene protein_coding_gene FALSE TRUE AT3G51440.1 strictosidine synthase family protein similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.362323786690349 3.41389263371911 0.00587327641868803 1 3.27117729065212 7.94505744303866 0.362323786690349 0.113047421060344
AT4G11460_at 0.170218989380832 0.2505658109672 -0.0630747814865523 -0.0103223768038562 0.242641048030679 0.385915354074414 0.349278354071327 0.256752852579748 0.714785839110944 0.568757824868857 0.216094469834568 0.0880919660965606 0.43292584655077 0.00398200243442443 0.462181342428995 0.119255493153101 0.127773652919749 0.110396995547249 0.660236005125926 0.205890955130781 0.208575141617281 0.199998991076458 0.202343067819443 0.205205702424575 0.206925082094892 0.202464302697214 0.202368841877218 0.206178743031222 0.208325529852249 0.199139458180046 0.203991564117517 0.199139458180046 0.201902834303974 0.202453383849190 0.202795132864108 0.203916639289447 0.223414109958086 0.202506032785989 4 4 + 6966474 6967036 6966880.364 6964463 6967088 + gene protein_coding_gene FALSE TRUE AT4G11460.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11480.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.285376513022002 -3.41381914323843 0.00587403470974615 1 3.27106343290018 0.61925404509635 -0.285376513022002 0.0338793668802887
AT2G16400_at 7.58362964855655 7.86183394227066 7.60124671700827 7.5550290580512 8.11251182278672 7.8561482403421 8.333790675811 8.43566663521337 7.75654599488754 8.08145515967854 8.05268861715115 7.6106550455597 7.87992757615863 7.84693293868291 6.9253584982527 7.65731888294481 7.21524461560945 7.2283574309766 7.86416435623674 0.175602776043456 0.175025801608710 0.174539746570412 0.180541022012502 0.17450961915125 0.171293798498509 0.182775969008249 0.178227631757204 0.18678990521288 0.172677844229539 0.174579772375667 0.175648957281648 0.176491039723861 0.186303220252930 0.187362321261355 0.178657256731813 0.179314357194882 0.191666080741563 0.179682091729243 2 2|0 -|/ 7108594 7109296 7108894.5 7108412 7111003 - gene protein_coding_gene FALSE TRUE AT2G16400.1 BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor similar to BLH6 (BELL1-LIKE HOMEODOMAIN 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34610.1); similar to benzothiadiazole-induced homeodomain protein 1; BTH-induced homeodomain protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAS18416.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) -0.310578826091552 -3.41326398704444 0.00587976617612803 1 3.27020332322393 15.6438732363056 -0.310578826091552 0.0682710405850843
AT2G25660_at 6.2431445003191 6.67807421933853 6.33605354255156 6.30278143683014 7.0877344402008 6.50051799578152 6.84600569430068 6.75438175117505 7.17227890398613 7.29992666054883 6.4259333328117 6.92468716041586 6.95142310357432 6.46210201270687 6.54663086965091 6.84059040349926 6.31705897510578 6.41299527195205 7.43159683261934 0.212917972439707 0.199523636281149 0.202912753753095 0.220633082757641 0.206083387165370 0.214316011101552 0.20615626894408 0.201876803059604 0.213515838959286 0.210782731192161 0.202905460019153 0.20577030688698 0.209726103218879 0.216618323513945 0.199523636281149 0.204515912239014 0.219483011784886 0.211491958653614 0.211702341517393 2 2|0 -|/ 10923536 10924274 10923884.111 10923281 10934468 - gene protein_coding_gene FALSE TRUE AT2G25660.1 EMB2410 (EMBRYO DEFECTIVE 2410) similar to Os01g0179400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042199.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67835.1); contains domain Pyruvoyl-dependent histidine and arginine decarboxylases (SSF56271) -0.38235975597292 -3.41318742891309 0.00588055701637162 1 3.27008470890288 13.5493092510285 -0.38235975597292 0.127578850415281
AT4G31450_at 7.66264530090647 7.64651846585286 8.08020075491336 8.1727645737689 8.39333016768643 8.2055786980693 8.44243873920793 8.23240727309346 7.31279194649193 7.76690907232442 7.47665066859774 7.49076969163291 7.92494129269017 8.06806516112659 7.70752423956514 8.44366345942445 8.21061074607148 8.12037241608855 7.58433732079304 0.149356054457505 0.147832130507750 0.146710567658141 0.157403079447354 0.149203957285915 0.153063091687109 0.157694272550415 0.151915138448931 0.180655054248949 0.157773923475589 0.152853373617761 0.148342229054489 0.158057287318752 0.159613152514259 0.154235073993819 0.147767757592078 0.148667159743784 0.151136614699365 0.152321001488434 4 4|0 -|/ 15255972 15257037 15256700 15255629 15258818 - gene protein_coding_gene FALSE TRUE AT4G31450.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G24870.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE80412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.296305683353743 3.41303231250238 0.00588215969236236 1 3.26984437990589 15.8469875746554 0.296305683353743 0.0513922724012048
AT1G02110_at 3.47590621270757 3.15409896404432 2.53476822673554 2.40380910027304 2.88541044679022 2.53541973245034 3.15722038034852 3.50944195692214 3.81548531302152 4.05477244466574 4.05739128272697 4.35302138874828 3.82136444861081 4.22758407711966 4.28682741962789 4.19993494528489 3.20422296985027 3.91336584346634 4.05979538994949 0.186061852870477 0.190694631078405 0.193563167352758 0.191124619129814 0.190512634542474 0.196127532419952 0.196538293427972 0.188052277845296 0.194156577760008 0.188399613651883 0.186061852870477 0.191677990000010 0.188291768578338 0.186710691192311 0.192334552895744 0.188070310614206 0.191070865722165 0.187170827751521 0.186061852870477 1 1 + 394837 395387 395099.182 392939 395554 + gene protein_coding_gene FALSE TRUE AT1G02110.1 proline-rich family protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G60320.1); similar to Os10g0562700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065395.1); similar to bZIP transcription factor bZIP80 [Glycine max] (GB:ABI34654.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) -0.351517668779772 -3.41273713891775 0.0058852106871527 1 3.26938704851143 6.94933359227144 -0.351517668779772 0.104875086636808
AT1G14280_at 9.60634371652337 9.72027195579573 9.20381330544122 9.45672438980206 10.1905170605274 9.91875605482205 10.8240867087013 10.6966940832672 11.2898318509139 11.0151748362009 11.5171157548530 11.2971772990874 11.4012272755690 11.2031701062618 11.0127917203521 11.2549648009024 10.8113761422412 11.0600253867778 11.5981162941110 0.103462191375820 0.095588526270436 0.101994479951330 0.101342614804072 0.0970268647355033 0.0994875937272464 0.097141520644875 0.103473474204357 0.110042475344816 0.0995971960856123 0.100946647809006 0.0986869442767848 0.097859626641673 0.101394823261143 0.0996525847044258 0.0977026534283387 0.105686218461589 0.0967375532098672 0.096276401977912 1 1 + 4878422 4878950 4878735.636 4877622 4879144 + gene protein_coding_gene FALSE TRUE AT1G14280.1 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. similar to PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) [Arabidopsis thaliana] (TAIR:AT2G02950.1); similar to Putative phytochrome kinase substrate 1, identical [Solanum demissum] (GB:AAT38801.1) -0.31285317320501 -3.41251051272654 0.00588755425759667 1 3.26903591722129 21.2000369366088 -0.31285317320501 0.0707255135341402
AT4G26660_at 0.742434259014723 0.968742674727531 0.893396523048343 0.758353790149788 1.12544669955666 1.00058774403485 0.91955117426213 0.64493625028702 0.703530957248486 0.819951223067675 1.61354731061585 0.721264571628214 1.30159175524380 1.46793947006922 1.66018542824217 1.17177359812463 1.32381623975454 1.23029871159684 0.91835591568057 0.19575539738082 0.200886167655377 0.197438535331491 0.203764825368900 0.204693688968762 0.201139447179930 0.199720827258023 0.207090124670239 0.208816955028806 0.19575539738082 0.197372581787205 0.19575539738082 0.199202623862951 0.202897167573217 0.196745033237856 0.196150755024793 0.200761344512563 0.204449936578458 0.206971807853513 4 4 + 13451142 13451732 13451355.818 13448690 13452017 + gene protein_coding_gene FALSE TRUE AT4G26660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55520.2); similar to kinesin related protein [Lycopersicon esculentum] (GB:AAO15358.1); contains InterPro domain Kinesin-related; (InterPro:IPR010544) 0.311443101642528 3.41184541683819 0.00589443762128194 1 3.26800540349301 1.94430522321429 0.311443101642528 0.0693202537501172
AT4G36470_at 3.17080455194604 3.86059648063806 3.92039971558915 3.51080059973854 4.02583237959436 3.27116480842844 2.61426374653502 2.34946946405875 1.21432029938796 1.73236982972809 1.64567058873833 1.59639950980725 2.03460580253009 1.77146383230949 1.44769996143143 2.27536688028028 2.10347682405623 1.79698853802656 1.6609029926976 0.297959875151835 0.283417828568796 0.288516621318781 0.281973327397226 0.274839664471750 0.291581856445326 0.272832597425261 0.272832597425261 0.272832597425261 0.274183223343921 0.27968174459675 0.282040148679904 0.280844555720081 0.273685785573263 0.275755613209323 0.272832597425261 0.275146869292061 0.272832597425261 0.278916198097795 4 4 - 17215147 17215747 17215537.455 17215030 17216533 - gene protein_coding_gene FALSE TRUE AT4G36470.1 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to JMT (JASMONIC ACID CARBOXYL METHYLTRANSFERASE), jasmonate O-methyltransferase [Arabidopsis thaliana] (TAIR:AT1G19640.1); similar to putative S-adenosyl-L-methionine:jasmonic acid carboxyl methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAB64171.1); contains InterPro domain SAM dependent carboxyl methyltransferase; (InterPro:IPR005299) 0.490680216626367 3.41101860208477 0.00590300618009545 1 3.26672426938411 5.02532815135871 0.490680216626367 0.19603538025268
AT3G05670_at 6.15252367976376 6.68595062819608 5.7345232454742 6.03100253239016 6.66708718907764 6.4979059959993 6.69890820796044 6.42256473560669 6.52883589398069 6.93347030568138 6.60293252718682 6.34555987743241 6.24014018733562 6.42491617830619 5.73260321892482 6.68799495518837 6.62231076088288 6.51803672074813 7.18130258762148 0.247906036389797 0.247674326082808 0.250099114132279 0.246557208507027 0.242303101233333 0.250595037198246 0.249530697632582 0.254376597723528 0.263440044930991 0.242303101233333 0.242303101233333 0.242303101233333 0.249665521026688 0.242878215810696 0.245964699324626 0.247508087439966 0.250042511267237 0.249880955890181 0.242303101233333 3 3|0 +|/ 1656332 1657003 1656656.6 1653270 1657165 + gene protein_coding_gene FALSE TRUE AT3G05670.1 PHD finger family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G50690.1); similar to Os03g0302200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049869.1); similar to hypothetical protein DDBDRAFT_0188541 [Dictyostelium discoideum AX4] (GB:XP_636078.1); similar to Os07g0690300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060711.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.370874098995140 -3.41096490064674 0.00590356314724667 1 3.26664105809845 13.0003156429811 -0.370874098995140 0.119574670255438
AT2G22670_at 10.6472669934666 10.8458902179527 10.0569640545048 10.0567525412812 10.6734267372543 10.582010563277 10.9828226737397 11.1302174005941 11.0977891098331 11.3449368544408 11.6049748778416 11.5865045930634 11.3183670518539 11.1936733793015 11.4530593945360 11.2990882373645 10.6228450804407 11.2079283259784 11.4892521089992 0.0786596632187941 0.0776503614765298 0.0760578677000952 0.0770535497671387 0.076918417103107 0.0836889303844157 0.0775008124912891 0.076459126422465 0.083906217231939 0.0782035659588554 0.0798060447080022 0.0760578677000952 0.0766448435569134 0.0852913039307099 0.08072747628983 0.0760578677000952 0.0858217658128402 0.0790270683341392 0.0767148699621176 2 2|0 +|/ 9644676 9645391 9644970.5 9643520 9645763 + gene protein_coding_gene FALSE TRUE AT2G22670.1|AT2G22670.2|AT2G22670.3 IAA8 (indoleacetic acid-induced protein 8); transcription factor|IAA8 (indoleacetic acid-induced protein 8) IAA8 (IAA8) gene is auxin inducible. Identical to Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) (IAA8) [Arabidopsis Thaliana] (GB:Q38826); similar to IAA9 (indoleacetic acid-induced protein 9), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65670.2); similar to GH1 protein [Glycine max] (GB:AAB70005.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311)|Identical to Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) (IAA8) [Arabidopsis Thaliana] (GB:Q38826); similar to IAA9 (indoleacetic acid-induced protein 9), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65670.1); similar to GH1 protein [Glycine max] (GB:AAB70005.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.292057543784587 -3.41090133962321 0.00590422244315421 1 3.26654256891841 21.9201511354114 -0.292057543784587 0.0456330915410664
AT3G20000_at 7.95788136615618 8.1945579205794 7.99240273151078 7.93394119024512 7.37735802711846 7.64837032590331 7.9758381020726 8.34935836674813 7.74432294388622 7.40476200828866 6.83881540049866 7.55724931561309 7.09292619902609 7.07126441689099 7.68882505433324 6.9694474957257 7.22293411442267 7.53667426311418 7.45003409646751 0.149405625632993 0.153681631503748 0.153665726191137 0.152346937780646 0.163132320939658 0.148474482840750 0.165712111731937 0.159703099983780 0.156845409959834 0.157758278714373 0.160667495012779 0.151348003668685 0.155705076559329 0.149928458704089 0.153359572272752 0.151925667588996 0.157176937424022 0.155444535869014 0.156949750163361 3 3|0 +|/ 6969030 6970056 6969514.9 6967588 6970572 + gene protein_coding_gene FALSE TRUE AT3G20000.1 TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion-selective channel Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. Identical to Mitochondrial import receptor subunit TOM40 homolog 1 (Translocase of outer membrane 40 kDa subunit homolog 1) (TOM40-1) [Arabidopsis Thaliana] (GB:Q9LHE5); similar to porin family protein [Arabidopsis thaliana] (TAIR:AT1G50400.1); similar to Porin, eukaryotic type [Medicago truncatula] (GB:ABE85742.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) -0.333581760311187 -3.41083421070095 0.00590491882950743 1 3.26643855084903 15.3188668614587 -0.333581760311187 0.0903203769708269
AT4G14590_at 1.72775832035275 2.12379445849905 2.33966708315945 2.58801533007931 2.41403474764807 2.41676664992255 2.02308762842963 2.06683402802089 2.11146538173455 1.75816614178701 1.91425897834478 1.81503220733272 2.3254482352949 2.02075894305571 1.88627886605707 2.07045993788250 2.24942010648201 2.39317002944968 1.80551005317694 0.213310685246968 0.212029729087175 0.210372090598471 0.220462387192924 0.221195419554146 0.209947782935037 0.215756860918783 0.213921138051119 0.222302948579645 0.216936363645255 0.210992911200003 0.21574439343076 0.218391716400406 0.214503363481500 0.214168340116184 0.209947782935037 0.215404338733046 0.215704634729122 0.217584640686687 4 4 + 8375432 8375855 8375595 8374387 8375958 + gene protein_coding_gene FALSE TRUE AT4G14590.1 EMB2739 (EMBRYO DEFECTIVE 2739) similar to PREDICTED: similar to CG17665-PA.3 [Tribolium castaneum] (GB:XP_967034.1) 0.323445948982341 3.41075093478522 0.00590578283952733 1 3.26630951207516 4.20052841670742 0.323445948982341 0.0812514564001245
AT1G16970_at 5.84868798469997 6.57225779783947 6.18960710959314 6.65564396098524 5.50246219685026 5.77791371346292 5.81685137704681 5.69539652052692 4.63471203726058 5.0905444369528 3.92731894311563 3.92387242656556 3.7541423956969 3.78517003574312 3.78217147295039 4.24861627225598 4.1463334608093 4.0965045334118 4.85739376825309 0.200114417635832 0.201264576696906 0.197392635419726 0.199948818094269 0.202374723072622 0.202625857293395 0.212209770446051 0.205803775777020 0.202538154625759 0.201178796678251 0.201616800016174 0.197730904300673 0.198288713972513 0.205619054781276 0.205072072705173 0.201221826381634 0.200274597275024 0.199723935995272 0.201121934624171 1 1|0 -|/ 5801161 5801940 5801530 5800760 5805792 - gene protein_coding_gene FALSE TRUE AT1G16970.1 ATKU70/KU70 (Arabidopsis thaliana Ku70 homolog); double-stranded DNA binding / protein binding Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. similar to Ku70 homolog [Populus nigra] (GB:BAF03493.1); similar to Os07g0184900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059061.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain ATP-dependent DNA helicase, 70 kDa subunit; (InterPro:IPR006165); contains InterPro domain Ku; (InterPro:IPR006164); contains InterPro domain Ku70/Ku80, N-terminal alpha/beta; (InterPro:IPR005161); contains InterPro domain Ku70/Ku80 C-terminal arm; (InterPro:IPR005160) -0.427379448196155 -3.40882630885776 0.00592578747722108 1 3.26332708547822 10.4168023859876 -0.427379448196155 0.157790217712943
AT4G21300_at 1.28928174789591 1.48827842998979 1.9280077185378 1.84076911052845 1.57089803001650 1.60701882571357 1.56982274603319 1.48398157430195 0.681791649532826 1.45805802384773 1.76099682870106 1.46452090693872 1.97408190049648 1.43921352074707 1.32905558353085 1.49639351934343 1.37166363325411 1.11650542863730 1.44589012106753 0.227911982180859 0.227166782637066 0.231095355349496 0.230369038671453 0.230084792243632 0.227825399814462 0.227166782637066 0.235629255202738 0.239297431286282 0.229700487700388 0.231400401927386 0.227166782637066 0.230265255522422 0.230638427649399 0.231855304808638 0.235084626566339 0.236221157466799 0.231906408346851 0.241504282253320 4 4 + 11338471 11338978 11338727.182 11336489 11339062 + gene protein_coding_gene FALSE TRUE AT4G21300.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK09236.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.288819806850318 3.40819687707544 0.00593234486826353 1 3.26235164487862 2.94190752955489 0.288819806850318 0.0409096514012485
AT2G36330_at 6.97528661413974 6.89511066140406 7.37084746224723 7.63009951341355 6.80358634197701 6.39986217504164 6.85077414564905 6.52459725429171 5.86243799722259 6.06671064277098 6.29432493050347 5.98130480455261 5.78183432588048 6.29531534304663 5.96984960030514 6.47955294632845 6.66692576761624 6.6933524659841 5.52152907242062 0.208382442972782 0.216621679850528 0.222169600341976 0.214145272868293 0.211716209678158 0.232151463280903 0.222319719421808 0.222416210719965 0.233086176009695 0.216248230026859 0.211212846996774 0.211015785781933 0.209855446779882 0.208382442972782 0.212101229325403 0.208382442972782 0.217400888302286 0.213469443337575 0.214828245628325 2 2 + 15240933 15242352 15241627.2 15240601 15242532 + gene protein_coding_gene FALSE TRUE AT2G36330.1 similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT5G62820.1); similar to Os01g0640700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043680.1); similar to Os01g0661000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043777.1); similar to MtN24 [Medicago truncatula] (GB:CAA75572.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.346535828260566 3.40749740395766 0.00593964066716925 1 3.26126762285418 12.9748705679364 0.346535828260566 0.101355145171152
AT4G08980_at 8.91215524321474 9.24179982776374 9.38514124395657 9.41851962030151 9.8672044902041 9.52458460978237 9.09237407574477 8.79431744247653 8.66165468831485 8.61146516193908 8.84229903263038 8.64742185580527 8.94747153315434 9.04774363177705 8.34661620728173 9.0835661662209 9.11219891778997 8.84420316058771 8.87127342569642 0.134386205096959 0.126269746441812 0.129206268041837 0.127288438854047 0.126605900316556 0.129502218134247 0.125847609673394 0.132932838012229 0.148370835207531 0.131590403538093 0.137369671051649 0.124586189094903 0.122606601975337 0.126652029009369 0.13002577424201 0.12549415077665 0.129275667523073 0.127907656867431 0.125699893406702 4 4 + 5759527 5760072 5759758 5758102 5760555 + gene protein_coding_gene FALSE TRUE AT4G08980.1|AT4G08980.2|AT4G08980.3|AT4G08980.4 F-box family protein (FBW2) similar to F-box family protein (FBL20) [Arabidopsis thaliana] (TAIR:AT4G05460.1); similar to Os06g0219700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057164.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.1); similar to Os02g0757700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048172.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.341421574133499 3.40655249185748 0.00594951109501962 1 3.25980316484845 18.0663809800836 0.341421574133499 0.0972816302339039
AT4G25500_at 9.23367274580383 9.23847600554149 8.35785794467943 8.52106884922805 9.37385932543067 9.26335621421817 7.91820261571566 7.72011842378186 7.65966830534966 7.85691321355022 8.21009861153726 8.50195867189049 7.8985665578262 8.1237430477618 8.08484210180512 7.52634465986215 7.73659593666744 7.70882402765515 7.6980285063374 0.174318594736894 0.171093051928512 0.170149832940767 0.166167097834925 0.171107840869678 0.17441258589463 0.164510225080146 0.168553631080514 0.170505923931319 0.164510225080146 0.165476194018517 0.164510225080146 0.168241101005458 0.176824983814345 0.170709841500119 0.169719762031514 0.171692008268718 0.170531167135977 0.165166465900446 4 4|0 +|/ 13026693 13027056 13026858.3 13024581 13027450 + gene protein_coding_gene FALSE TRUE AT4G25500.1|AT4G25500.2|AT4G25500.3 ATRSP35 (Arabidopsis thaliana arginine/serine-rich splicing factor 35); RNA binding|ATRSP35 (Arabidopsis thaliana arginine/serine-rich splicing factor 35) encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Identical to Arginine/serine-rich-splicing factor RSP40 (RSP40) [Arabidopsis Thaliana] (GB:P92965;GB:Q96333); similar to ATRSP41 (Arabidopsis thaliana arginine/serine-rich splicing factor 41), RNA binding [Arabidopsis thaliana] (TAIR:AT5G52040.2); similar to splicing factor-like protein [Vitis riparia] (GB:AAS00039.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Arginine/serine-rich-splicing factor RSP40 (RSP40) [Arabidopsis Thaliana] (GB:P92965;GB:Q96333); similar to ATRSP41 (Arabidopsis thaliana arginine/serine-rich splicing factor 41), RNA binding [Arabidopsis thaliana] (TAIR:AT5G52040.2); similar to splicing factor-like protein [Vitis riparia] (GB:AAS00039.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.293543247904159 3.4063900758812 0.00595120936241645 1 3.25955143966899 16.5593640373606 0.293543247904159 0.0483653437422643
AT3G04670_at 6.46116887824052 7.1364713422819 7.53206631937146 7.80542947207605 7.21330936916245 6.9048876112973 6.05541407415655 6.46499108532231 6.14640782066043 5.5479434553209 6.02793429086185 5.90311121511638 5.70567903921422 5.83546185772459 5.86085058539511 6.29009919241799 5.6087784257912 5.42059364692016 5.77536443406098 0.279871045575397 0.29933035884831 0.295283013288395 0.302476499463195 0.283298557929469 0.292949998263947 0.283417825409763 0.280997538704247 0.28814547811491 0.285736553242875 0.282558400640674 0.279493778450432 0.28139353990664 0.28853531235305 0.286787362265823 0.278786938756937 0.291474292731629 0.297506202694914 0.278786938756937 3 3 - 1266539 1267273 1267036.364 1266248 1268356 - gene protein_coding_gene FALSE TRUE AT3G04670.1|AT3G04670.2 WRKY39 (WRKY DNA-binding protein 39); transcription factor member of WRKY Transcription Factor; Group II-d Identical to Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39) (WRKY39) [Arabidopsis Thaliana] (GB:Q9SR07); similar to WRKY74 (WRKY DNA-binding protein 74), transcription factor [Arabidopsis thaliana] (TAIR:AT5G28650.1); similar to Os03g0741400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051223.1); similar to WRKY DNA binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99243.1); similar to Os12g0597700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067197.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39) (WRKY39) [Arabidopsis Thaliana] (GB:Q9SR07); similar to WRKY74 (WRKY DNA-binding protein 74), transcription factor [Arabidopsis thaliana] (TAIR:AT5G28650.1); similar to WRKY DNA binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99243.1); similar to Os12g0597700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067197.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.42136840482129 3.40618822049044 0.00595332071156352 1 3.25923858521641 12.7741183198357 0.42136840482129 0.154168118883641
AT4G08040_at 0.272414574291518 0.415419871411677 0.247626505789715 0.613539070099466 0.701345254890146 0.784256178010991 0.573966098616243 0.0971220562314597 0.472484074136414 0.420149854746916 1.71699135229895 1.95462064548547 1.06737612565329 0.895671383151206 0.669560369409597 0.868960207017762 0.822834712751183 1.11873290107942 1.13822899508759 0.207873800246431 0.206189602333600 0.204359704693802 0.204435881827986 0.209593365958024 0.212577147339466 0.209358157245700 0.208211580467316 0.218093801429350 0.202799082124528 0.207360779210817 0.207916998096139 0.210580849626356 0.203535127145697 0.209442001893854 0.202799082124528 0.205016027462088 0.208762216434175 0.209439856775704 4 4 + 4888342 4888901 4888591.636 4887109 4888936 + gene protein_coding_gene FALSE TRUE AT4G08040.1 ACS11 (1-Amino-cyclopropane-1-carboxylate synthase 11); 1-aminocyclopropane-1-carboxylate synthase encodes an aminotransferase that belongs to ACC synthase gene family structurally Identical to 1-aminocyclopropane-1-carboxylate synthase 11 (EC 4.4.1.14) (ACC synthase 11) (S-adenosyl-L-methionine methylthioadenosine-lyase 11) (ACS11) [Arabidopsis Thaliana] (GB:Q9S9U6); similar to ACS8 (1-Amino-cyclopropane-1-carboxylate synthase 8) [Arabidopsis thaliana] (TAIR:AT4G37770.1); similar to ACC synthase [Malus x domestica] (GB:ABA03056.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Malus x domestica] (GB:BAA35057.1); similar to 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) (GB:P37821); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.354675128087705 3.40589954604036 0.00595634149633566 1 3.25879116477515 1.37136008621574 0.354675128087705 0.107878033090687
AT3G56160_at 4.43655811124665 3.84247235470991 4.09779531623222 3.07521289748291 4.01026786129625 3.29252317364602 6.77052662058103 6.15084058033878 5.06248263297381 6.07514809130207 5.47235528137944 6.32297561550794 5.71480661788453 6.42882850192697 6.18401854256491 6.85716896973817 5.74359774281438 5.8436128976632 5.67926451080239 0.264328979893078 0.263287689623312 0.270707631044169 0.282972469059865 0.256653649534911 0.266627151782972 0.261789122343228 0.257155132955997 0.270744243627702 0.252248050052522 0.253657462980116 0.257084807640073 0.269018425358652 0.255434339849274 0.252248050052522 0.258524248555672 0.264055678943201 0.253965795088791 0.252248050052522 3 0|3 /|- 20848892 20851335 20849873.25 20848423 20852520 - gene protein_coding_gene FALSE TRUE AT3G56160.1 bile acid:sodium symporter similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT2G26900.1); similar to Os02g0531200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047023.1); similar to Cysteine proteinase Cathepsin F (ISS) [Ostreococcus tauri] (GB:CAL52442.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) -0.607930414197943 -3.40575137374347 0.00595789262988828 1 3.25856150794193 10.2978007475472 -0.607930414197943 0.262323752912307
AT1G19920_at 7.83944787437524 8.08161894291105 7.59055719428887 7.73326618879096 7.80152905282014 7.06152611031871 9.1958847823605 9.09439610374318 8.33979283326885 8.68276735834263 8.80181416383227 9.13088949895963 8.2965064768189 8.70206263572423 8.76917266986518 8.55531317426036 8.31937276462482 8.75544154134113 8.3387336485945 0.169171745685779 0.151719696803085 0.171103181284341 0.161186956605565 0.153644580078974 0.172157422672055 0.156864497188839 0.163499685009491 0.153383940105176 0.153655284469233 0.148495292640511 0.153318555553954 0.155031913617590 0.153428328399093 0.157025589546706 0.149454569208037 0.173107125990331 0.150946355291970 0.154112903723483 1 1|0 -|/ 6915110 6915686 6915412.8 6914604 6916796 - gene protein_coding_gene FALSE TRUE AT1G19920.1 APS2 (ATP SULFURYLASE PRECURSOR) encodes a chloroplast form of ATP sulfurylase similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arabidopsis thaliana] (TAIR:AT5G43780.1); similar to APS1 (ATP sulfurylase 3) [Arabidopsis thaliana] (TAIR:AT3G22890.1); similar to ATP-sulfurylase [Medicago truncatula] (GB:ABE89666.1); similar to ATP-sulfurylase precursor [Brassica oleracea] (GB:AAB67995.1); similar to ATP sulfurylase precursor [Brassica oleracea var. botrytis] (GB:AAF13064.1); contains InterPro domain ATP-sulfurylase; (InterPro:IPR002650) -0.396780143508249 -3.40511785319121 0.00596452927269984 1 3.25757957506463 16.6098213957412 -0.396780143508249 0.138109872747974
AT3G02080_at 11.057367875653 11.0244997386508 10.4455890872614 10.4760892875550 10.8061914485989 10.6527991482399 10.7653089749934 10.9072566321351 10.8313320974941 10.5746766226035 10.5587897229996 10.7037350595920 10.3999496454196 10.3791189244461 10.9741036547584 10.1672737786001 10.2104710387292 10.2795724715134 10.6586394163739 0.069081704914543 0.0701833905580828 0.0718738768896777 0.0726076959810905 0.0715941096074472 0.0733456406656501 0.0720524320821903 0.073836921071125 0.074551149926348 0.0698363333908159 0.0696046189318994 0.0687563041939092 0.0768866680209832 0.0718362852583551 0.0720184270798986 0.0712052742549872 0.0775907950364391 0.0689011975006052 0.0708815112884529 3 3 - 364151 365132 364658.545 363888 365282 - gene protein_coding_gene FALSE TRUE AT3G02080.1 40S ribosomal protein S19 (RPS19A) Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to Ribosomal protein S19e [Medicago truncatula] (GB:ABE88682.1); contains InterPro domain Ribosomal protein S19e; (InterPro:IPR001266) -0.286265160463755 -3.4047618793049 0.00596826171082806 1 3.25702781497814 21.3405591903848 -0.286265160463755 0.0369903733954762
AT2G17590_at 1.42420730156234 1.46109944960232 1.4969263832449 1.27476204396232 0.924502544878476 1.31454101505015 1.67058359557851 1.66710613433788 1.61724006224007 1.66076832548805 1.72474693295140 1.29116160364642 1.24015139823422 0.98585302186687 1.46687980817749 1.49807210464515 1.64703842287094 1.63278326421753 2.03649955031284 0.194984539719246 0.188652901445688 0.193664379624038 0.189876608939226 0.198461174887115 0.194424951266989 0.188652901445688 0.195158647106916 0.195527867364243 0.20633279850573 0.19532675005602 0.191547142272327 0.204684435070197 0.196664323988309 0.200242113713939 0.195555898207793 0.193266554761213 0.202637124643298 0.195838379633174 2 2 - 7658392 7658876 7658629.455 7658212 7660262 - gene protein_coding_gene FALSE TRUE AT2G17590.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G17600.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11402.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13760.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.319366474961853 -3.40457275390238 0.005970245691321 1 3.25673466619999 3.00788529132206 -0.319366474961853 0.0779438138922655
AT1G66080_at 1.92515973449935 2.4028397605888 2.22383710756816 2.16805490855181 2.35790244938858 1.90384911694763 1.81521957280724 2.01802035164018 1.81815433164867 1.87738932068269 2.60024360344016 2.34111972412201 2.35573631044221 1.94760440065541 2.42584026850626 2.35932896855079 2.44641621356404 2.82299327821136 1.68905183461717 0.210482209084211 0.209110708466540 0.205800115795944 0.211310208774359 0.209990303765119 0.207703948148598 0.206151176539298 0.207960339313688 0.214615517362452 0.215136577064825 0.205800115795944 0.205800115795944 0.208300971735723 0.217794260639904 0.209537108112368 0.209206341434945 0.207606608700283 0.208823248676057 0.214001067223293 1 1 - 24604260 24604653 24604453.364 24603880 24604820 - gene protein_coding_gene FALSE TRUE AT1G66080.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO06975.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94856.1); contains InterPro domain Protein of unknown function DUF775; (InterPro:IPR008493) 0.370323112175255 3.40407490240694 0.00597547152853395 1 3.25596297117735 4.20549812937532 0.370323112175255 0.119718616766119
AT1G61340_at 1.66149016255696 1.77916866209901 2.28755786499554 2.25676582866813 2.73911343656882 2.15247106509015 2.03531023223303 1.27316425681918 1.50602979019416 2.01087783261711 2.02939770067143 1.63571368896579 2.07578192923030 1.80146989011038 1.9727902245895 2.43042935447205 1.66919427364180 2.18171387988307 1.76609895641665 0.191117614254998 0.194473286137146 0.195650745714502 0.198531081013547 0.19184639726822 0.191117614254998 0.194120389529918 0.195358313263642 0.20617519231556 0.196156061303108 0.193027162840451 0.193076444394159 0.195982126711291 0.192845957161081 0.191117614254998 0.193928752100572 0.194716603781035 0.206469109893288 0.204269766836389 1 1|0 +|/ 22632316 22633375 22632884.9 22631930 22633674 + gene protein_coding_gene FALSE TRUE AT1G61340.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G21510.1); similar to At1g61340 [Medicago truncatula] (GB:ABD32592.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.442626447511591 3.40355003778131 0.00598098599009006 1 3.25514938308823 3.89091196901461 0.442626447511591 0.16776595485793
AT2G26870_at 3.28592238868829 3.43796745939476 2.04452916654800 2.12917672972759 2.91834697952447 3.08239344640892 2.49255820689295 2.64178794271000 2.57145073658866 2.99107815261929 2.29257920578160 2.61041213667034 3.39226196412526 3.02429509499664 2.79768426301063 2.87242787172310 2.60773881514774 2.56886798077332 3.24800918209874 0.234758829712394 0.232411872693421 0.228874240598606 0.229697583388434 0.234982413356173 0.234173391226422 0.231745452469619 0.235697132726299 0.232103016305889 0.241916294555963 0.232442757093933 0.228874240598606 0.230494777222503 0.231542768817041 0.228874240598606 0.235559828398401 0.234860832659125 0.229239279968579 0.242088532725429 2 2 - 11464208 11464760 11464547.273 11464086 11466443 - gene protein_coding_gene FALSE TRUE AT2G26870.1 phosphoesterase family protein similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G07230.1); similar to putative phospholipase [Oryza sativa] (GB:AAK82449.1); similar to Os01g0955000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045435.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) -0.293505013054787 -3.40253181710735 0.00599169873865199 1 3.25357098567341 5.60790001013561 -0.293505013054787 0.0487829006105074
AT1G18640_at 5.4362253488399 5.62247040365599 5.27992226924716 5.56755236046893 5.91488884236419 5.9552194991873 5.07712281445429 5.33087141340305 5.98104907554633 5.62487331732169 7.35243944471523 6.14740650965505 6.06813036096316 6.39159560392812 7.00694178755633 5.99584635392261 5.25764933788759 6.2217381245365 6.35635082190362 0.189353796799211 0.188747778052416 0.184675552542097 0.194453547299114 0.184906530156618 0.192199705060905 0.184649116664225 0.191382904118646 0.192152706946521 0.197013319630024 0.198126334674039 0.190880859100028 0.193674919286020 0.192878466726376 0.193562718771043 0.190742459729925 0.191202818075966 0.199287798979143 0.197030785380429 1 0|1 /|- 6416568 6417549 6416968 6416349 6418682 - gene protein_coding_gene FALSE TRUE AT1G18640.2 PSP (3-PHOSPHOSERINE PHOSPHATASE) 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast Identical to Phosphoserine phosphatase, chloroplast precursor (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase) (PSP) [Arabidopsis Thaliana] (GB:O82796;GB:Q9FZ85); similar to Os12g0502400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066829.1); similar to hypothetical protein [Sorghum bicolor] (GB:AAD27569.1); similar to Os11g0629500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068315.1); contains InterPro domain HAD-superfamily hydrolase subfamily IB, PSPase-like; (InterPro:IPR006383); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Phosphoserine phosphatase SerB; (InterPro:IPR004469) 0.31525864160014 3.40238418016505 0.00599325366450786 1 3.25334211905507 11.6693555416123 0.31525864160014 0.0741177595612082
AT1G68760_at 3.14240847384201 3.46635981234170 2.82428738136302 2.4253008958228 3.18148195270428 3.07844958528697 4.58498027594972 4.61650282901097 3.46763795052979 3.89589235745186 4.87562401133642 4.87312626087383 3.91352608129881 4.37444472499196 4.48603344441657 4.1563858788714 4.2770681919051 4.12623248759809 4.56698863469852 0.277063981582111 0.283135799710203 0.292438826560577 0.284698302164259 0.274074591870245 0.280570977665555 0.277940201012635 0.283414283003085 0.281183124503028 0.278896871186943 0.278833133474340 0.274412125418372 0.271659160773233 0.272272405398103 0.289419992314553 0.271659160773233 0.287200110625953 0.284131236267391 0.290769542131754 1 1|0 +|/ 25832767 25833240 25833044 25832705 25833476 + gene protein_coding_gene FALSE TRUE AT1G68760.1 ATNUDT1 (Arabidopsis thaliana Nudix hydrolase homolog 1); dihydroneopterin triphosphate pyrophosphohydrolase/ hydrolase Identical to Nudix hydrolase 1 (EC 3.6.1.-) (AtNUDT1) (NADH pyrophosphatase) (EC 3.6.1.22) (DHNTP pyrophosphohydrolase) (Dihydroneopterin triphosphate pyrophosphohydrolase) (NUDT1) [Arabidopsis Thaliana] (GB:Q9CA40); similar to MutT/nudix family protein [Idiomarina loihiensis L2TR] (GB:YP_154697.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.333358703195183 -3.40200999214881 0.00599719649850709 1 3.25276204548135 7.59604379215097 -0.333358703195183 0.0908733134391273
AT1G78010_at 4.18495329094819 4.43918166557291 4.04242159593752 4.12437340561163 4.49362875840401 3.84507958059832 4.81202424516036 4.8040828741839 3.93708862763083 4.69954790459027 3.85228012556508 4.3730025383895 3.9466827340404 3.9203447158552 4.01027821777035 4.50533199384418 4.13052507157056 3.75052590626841 4.48010604856379 0.238530287869244 0.220479742948622 0.237838862319308 0.226242040312413 0.221956897240810 0.226760731028654 0.223177197684609 0.221590349123812 0.238061523826604 0.245333490311508 0.222531374789020 0.229945119655894 0.235951339576942 0.225885823064837 0.231874718897760 0.222590850389025 0.225322846360702 0.247519571312137 0.220479742948622 1 1 + 29340540 29341146 29340812.1 29338394 29341345 + gene protein_coding_gene FALSE TRUE AT1G78010.1 tRNA modification GTPase, putative similar to EMB2738 (EMBRYO DEFECTIVE 2738) [Arabidopsis thaliana] (TAIR:AT3G12080.2); similar to tRNA modification GTPase TrmE [Synechococcus elongatus PCC 7942] (GB:YP_400599.1); similar to Os08g0407000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061774.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding; (InterPro:IPR005289); contains InterPro domain tRNA modification GTPase TrmE; (InterPro:IPR004520) -0.372405398921903 -3.40200772764649 0.00599722036774349 1 3.25275853497183 8.55990264697273 -0.372405398921903 0.121388597443102
AT1G19670_at 10.235612436586 10.2308162890736 8.9789080333193 9.33057144033063 9.31749461630767 9.06037600720083 9.82979231804528 9.94987499930363 8.79327121343773 9.31132884918129 9.20116140558123 9.41533647201288 9.12122958237183 9.07931898657369 9.6115818782958 10.0960872076285 8.50713934410857 8.9909037213482 8.90101212443674 0.0994778532011153 0.0934424922850632 0.104550969089374 0.0971278228816333 0.096962246505933 0.0981142510409052 0.0957243437090363 0.0955261112769288 0.107038567089613 0.0934424922850632 0.0954856495507427 0.0934424922850632 0.0976232668118653 0.0974888534297071 0.0967304512440825 0.0947217252394538 0.111955282371358 0.101278000321365 0.0970674954779516 1 1 - 6803787 6804315 6804099.545 6803602 6805035 - gene protein_coding_gene FALSE TRUE AT1G19670.1 ATCLH1 (CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. Identical to Chlorophyllase-1 (EC 3.1.1.14) (AtCLH1) (Chlorophyll-chlorophyllido hydrolase 1) (Chlase 1) (Coronatine-induced protein 1) (CORI1) (CLH1) [Arabidopsis Thaliana] (GB:O22527); similar to ATCLH2 (Chlorophyll-chlorophyllido hydrolase 2) [Arabidopsis thaliana] (TAIR:AT5G43860.1); similar to chlorophyllase 1 [Brassica oleracea] (GB:AAN51933.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Chlorophyllase; (InterPro:IPR010821) -0.319356195370514 -3.40157077071472 0.006001827981661 1 3.25208114167744 18.7440385444002 -0.319356195370514 0.0782046230919398
AT1G44770_at 9.83797987759742 10.1657818019057 10.2258009446051 10.3235607575838 10.7572059827932 10.3899769769205 9.80329073600047 9.43589639771427 9.54323835529019 9.73735560113 9.78176243983837 9.63428839593685 9.93888533619526 9.78054729584587 9.39736984284355 10.1479700117108 9.85390120812845 9.50624285966136 9.70227215008935 0.150077528273746 0.150331123703555 0.152889817885798 0.152926689860374 0.151141609172601 0.159369318120930 0.153451984588216 0.154227869644258 0.161123938713678 0.157197170391480 0.16036045464863 0.154458692830306 0.150605144775563 0.155154899519612 0.161044255556098 0.151627769039783 0.15543519307854 0.157953293127378 0.159569100972451 1 0|1 /|- 16910275 16911228 16910646.333 16909979 16911935 - gene protein_coding_gene FALSE TRUE AT1G44770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49710.3); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98409.1) 0.353782258552365 3.40034759990246 0.0060147453350535 1 3.25018483849905 19.8254748306933 0.353782258552365 0.107634829321376
AT3G17365_at 5.88505645170428 6.16405319719112 6.54159994880397 6.13441759873286 6.8490536992835 6.75997822398145 5.68487564275194 5.98202410618397 4.91279037823748 5.43110026752019 5.63353461528329 4.98081555695221 5.51401113346538 5.30136161487962 5.39557798398618 5.12006532949765 5.21197143000458 5.68142496960268 5.57618148857413 0.221542418369344 0.217530615684383 0.216408481382543 0.229601923243216 0.214960933538836 0.224870703587179 0.225589072294865 0.224040493325006 0.246305351564944 0.224270744773702 0.219261745727759 0.223880919032742 0.21698298317341 0.219133336762484 0.217700353551363 0.220459218469625 0.226975056442957 0.229121981374943 0.219784967742364 3 3|0 -|/ 5947367 5948628 5947816.6 5946957 5948855 - gene protein_coding_gene FALSE TRUE AT3G17365.1 catalytic similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.345207318003815 3.40015033538959 0.00601683122086853 1 3.24987900478656 11.5809003789056 0.345207318003815 0.100887796688749
AT4G36710_at 4.69527183256828 5.44757786713465 5.39242275019651 5.76970121077631 5.02134391923734 4.9726873389407 3.61612058069248 3.731391305294 3.91205817264682 3.20307576248431 3.16317882268849 3.50702874562479 3.65717475694332 3.28638276107185 3.04286934315025 3.51718454460035 3.24070535653597 3.8797578920983 3.41129448299487 0.294975492293837 0.312946192909545 0.325678861926745 0.321574742145695 0.298648311293243 0.313986109612473 0.300407476688914 0.294975492293837 0.299962812309233 0.302291305067721 0.306694420495282 0.295041635763555 0.295927290202393 0.308061494660298 0.299233057748836 0.294975492293837 0.303219738243047 0.303423479846138 0.294975492293837 4 4 + 17307029 17307489 17307274.909 17305762 17307647 + gene protein_coding_gene FALSE TRUE AT4G36710.1 scarecrow transcription factor family protein similar to scarecrow-like transcription factor 6 (SCL6) [Arabidopsis thaliana] (TAIR:AT4G00150.1); similar to SCARECROW-like protein [Brassica napus] (GB:AAT75161.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.40971210674793 3.39822988555831 0.00603717691575185 1 3.24690142943937 8.29111197587895 0.40971210674793 0.147244830536875
AT4G26440_at 1.29180931512696 1.08719011558447 0.692039830787924 0.973717207538624 0.58732728435618 0.71581197941081 0.798497320981954 1.24981830149056 1.37346702812729 1.1267825476728 0.802822526058017 0.964236913265001 0.971987504062176 0.600330854781421 0.810416020771158 0.759518993670613 0.661406999580303 1.09459152077595 0.976774794377238 0.198249437422441 0.199539205449551 0.202809134134511 0.19818931648108 0.197231576026997 0.194658033697387 0.20449989327515 0.201498335917059 0.197242090799915 0.199785986050007 0.204070671255057 0.204166984890094 0.197057914720741 0.20440973848057 0.198118219809177 0.195718763112048 0.194015373320443 0.209584313369804 0.194015373320443 4 4 - 13357646 13358062 13357859.818 13357604 13359559 - gene protein_coding_gene FALSE TRUE AT4G26440.1 WRKY34 (MICROSPORE-SPECIFIC PROMOTER 3); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 34 (WRKY DNA-binding protein 34) (WRKY34) [Arabidopsis Thaliana] (GB:O65590); similar to WRKY2 (WRKY DNA-binding protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56270.1); similar to putative lateral suppressor re (GB:BAD90118.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.345224447272232 -3.39752282493383 0.00604468541404904 1 3.24580508900963 1.92061243941620 -0.345224447272232 0.101116375502754
AT2G18390_at 7.44508399346003 7.85898339540235 6.42762008958145 6.36157290868035 7.34782163551674 7.0180055441533 6.88464855194753 6.50685650787348 7.22931394329708 7.1987197379622 7.30061578648686 7.22494989714656 6.8214501085674 6.93936513516587 7.05038319622718 6.49715304802651 6.64126962636979 6.6337870561335 7.24606384457714 0.197651686581135 0.203133054970035 0.194955928308994 0.199206131657721 0.195263691516134 0.197858549781236 0.197299524119246 0.202465456301722 0.222812978589253 0.211243020177676 0.197376785612823 0.194955928308994 0.199731485278233 0.205276266957591 0.206071015609507 0.198177219082809 0.204642939194554 0.208416354828149 0.199093665764838 2 0|2 /|+ 7995625 7996430 7996148.667 7995247 7996607 + gene protein_coding_gene FALSE TRUE AT2G18390.1 TTN5 (TITAN 5); GTP binding Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development. Identical to Probable ADP-ribosylation factor At2g18390 [Arabidopsis Thaliana] (GB:Q9ZPX1); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G10630.1); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ATARFA1B (ADP-ribosylation factor A1B), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT5G14670.1); similar to Os02g0327100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046710.1); similar to ARF-like protein [Dictyostelium discoideum AX4] (GB:XP_640825.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) -0.360607755600612 -3.39697865875561 0.00605047059650688 1 3.24496129954646 14.0379845318490 -0.360607755600612 0.113106869159315
AT1G33250_at 6.82332603456164 7.3119766310199 6.6681995415559 6.90370330792729 7.73984657608523 7.39566136850548 7.55141335570541 7.36157067637656 7.88965079254826 6.90729302034988 7.28094635061285 6.62816120540867 6.83583529795377 6.7663366626953 6.40177379346526 6.7279238898056 6.61946164940894 6.79653995283411 7.40440824108932 0.218106859660477 0.205104516230151 0.217659318819199 0.216044102416388 0.209008216767060 0.215460757104361 0.212197181727619 0.20988839772092 0.213453270992418 0.211221613344751 0.213230118621829 0.205495563915606 0.218854712673794 0.209771239645802 0.211528945936413 0.209823029491375 0.209676757427895 0.212689593594686 0.217001466902894 1 1 - 12057504 12058168 12057833.545 12057230 12059465 - gene protein_coding_gene FALSE TRUE AT1G33250.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to fringe protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47887.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740); contains InterPro domain Fringe-like; (InterPro:IPR003378) -0.364273655143413 -3.39592668864511 0.00606167046394453 1 3.24333003837113 14.2982487039349 -0.364273655143413 0.115926622222902
AT1G43170_at 11.7797118676432 12.0769285404419 11.4679777994433 11.5289325857831 11.6825761803158 11.5599701212197 11.8563671302159 12.2609539390839 11.8168578424263 11.7889125198889 11.5551282069137 11.8059734723370 11.5364150382771 11.4132523116870 11.9057371471273 11.2355141248954 11.2952212987228 11.4802014326900 11.6689096652171 0.0919157189803564 0.0904827779109657 0.0944337654108278 0.0934776382512194 0.0891009005117501 0.0908020166382482 0.0918274530381078 0.0905858200760389 0.095502831490404 0.0894691780221628 0.0939855006669745 0.0870739904363831 0.0871534372776073 0.0896185442548152 0.0904967372137405 0.088751300945006 0.10173951787976 0.0907399202293813 0.0872715242456707 1 1 + 16270380 16270993 16270750 16269160 16271310 + gene protein_coding_gene FALSE TRUE AT1G43170.1|AT1G43170.2|AT1G43170.3|AT1G43170.4 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome|ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q93WD0); similar to ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G61580.1); similar to ribosomal protein L3A [Nicotiana tabacum] (GB:AAQ96335.1); similar to ribosomal protein (GB:AAA66160.1); similar to Translation factor [Medicago truncatula] (GB:ABE83172.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597)|Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q93WD0); similar to ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G61580.1); similar to ribosomal protein (GB:AAA66160.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) -0.33171124720928 -3.39488009002551 0.00607283421033001 1 3.24170702054600 23.4200057979810 -0.33171124720928 0.0900509640765673
AT1G23520_at 1.55488266796773 1.68601398198353 1.79196598538446 1.93574105400888 1.05499788648528 1.35130822489025 1.70802624497072 1.44399114591813 2.10365271852418 2.07805446744862 1.54363845011306 1.17627283311721 1.95160777159631 1.34867671867240 1.58570345945915 1.70148920589340 1.53902884300671 2.18803939201335 2.41337396476419 0.198624856989817 0.204685856053002 0.198624856989817 0.200927862855907 0.204665112785822 0.202116619934623 0.200119927155256 0.200330751118287 0.205175933349773 0.206386801691453 0.202389088413589 0.198848394431151 0.203914967995341 0.204670153701232 0.203343409746583 0.199702437783677 0.215931011522632 0.208119761548372 0.210158310324958 1 1|0 -|/ 8343569 8344308 8344003.8 8343413 8344828 - gene protein_coding_gene FALSE TRUE AT1G23520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23600.1); similar to OBP32pep (GB:AAA79703.1); contains InterPro domain Protein of unknown function DUF220; (InterPro:IPR003863) -0.31688926093143 -3.39408161073481 0.00608136549972758 1 3.24046871732543 3.47969963285760 -0.31688926093143 0.07649349753793
AT1G10170_at 7.05249921628065 7.02283794992024 7.44675049233925 7.35119064354354 7.41281828493452 7.59418029442755 6.68840424549522 6.76284932441336 6.52960360752891 6.70336728642501 6.59198275539171 6.66792779777067 6.99227045961196 6.67008257467134 6.04473133786027 6.97012024296165 7.16643555376593 6.44803183554607 6.84186694142272 0.165440331658847 0.158458014464102 0.160870915540398 0.162860601780903 0.157900596756380 0.158383338318972 0.157745734447686 0.162087996304285 0.182418093722217 0.163877550149865 0.162380437514424 0.157745734447686 0.160307055096881 0.157745734447686 0.163586221950207 0.160176258631464 0.157745734447686 0.172686496488166 0.160133088994012 1 1 - 3334027 3334484 3334228.636 3333597 3337493 - gene protein_coding_gene FALSE TRUE AT1G10170.1 NF-X1 type zinc finger family protein similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G05660.1); similar to putative TF-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46154.1); similar to TF-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72621.1); similar to Zinc finger, NF-X1-type; Single-stranded nucleic acid binding R3H; Zinc finger, RING-type; Zinc finger, PHD-type [Medicago truncatula] (GB:ABE80186.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, NF-X1-type; (InterPro:IPR000967); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.285961226344542 3.39386923548476 0.00608363667175642 1 3.24013935167171 13.8592215221641 0.285961226344542 0.0380900051958247
AT3G26980_at 5.54757842053608 5.59519072926152 5.96629928742443 6.10015300431122 5.92057778897259 5.86389086968477 5.40586375124132 5.53214105694388 5.69440056796474 5.91998147423271 6.27112312099588 6.64232636336779 5.58464357321125 5.80944311479046 6.07907624709197 5.891652695149 5.6190576897703 5.40361736471897 5.74763633143883 0.145374229971501 0.145345416018542 0.147282572600411 0.142455735106918 0.143350223057296 0.147032487647926 0.149455434271546 0.142129049686865 0.143714059261471 0.147405227220275 0.144449842960718 0.144786713000326 0.142250816849962 0.146304091185642 0.140563335217020 0.140652659866993 0.144918257325324 0.145506099480378 0.142231478723831 3 3 - 9947720 9948655 9948224.19 9947403 9949277 - gene protein_coding_gene FALSE TRUE AT3G26980.1 ubiquitin family protein Identical to Membrane-anchored ubiquitin-fold protein 4 precursor (Membrane- anchored ub-fold protein 4) (AtMUB4) (MUB4) [Arabidopsis Thaliana] (GB:Q9LSD8); similar to ATGP4 (Arabidopsis thaliana geranylgeranylated protein) [Arabidopsis thaliana] (TAIR:AT4G24990.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); similar to Os02g0750600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048133.1); similar to Os04g0393300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052648.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.283907405680371 3.39352961585978 0.00608727041875875 1 3.23961263966526 11.5914403530548 0.283907405680371 0.0343255634488388
AT1G27570_at 1.58522732692984 1.93763541200042 1.84690838346154 2.4501552586538 1.20495133512957 1.35246781279708 1.44910676285973 1.59413765606528 2.56704861602479 2.47923077026836 1.58048832391754 1.68341358837769 1.64741847633898 1.57075103084013 1.16016965750050 1.96190896299968 1.32708339859955 1.71652504838169 2.18118810133429 0.218993480867188 0.224222730227057 0.223018430627989 0.229621689001656 0.216792896601168 0.217288237470493 0.217342181413734 0.223108160328392 0.223941409329906 0.222844671648109 0.224349700151122 0.223018304802097 0.220104926481674 0.218808346873613 0.223834860723574 0.226108044032021 0.219711894115285 0.227735464974957 0.223578602291497 1 1 + 9581889 9582195 9582020.818 9575525 9582363 + gene protein_coding_gene FALSE TRUE AT1G27570.1 phosphatidylinositol 3- and 4-kinase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27590.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago truncatula] (GB:ABE94037.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain HEAT; (InterPro:IPR000357) -0.378046055146500 -3.39348111022414 0.0060877895842551 1 3.23953741212156 3.67263656352647 -0.378046055146500 0.126091827517638
AT4G00560_at 5.93438663271832 5.07875987634296 4.2841426103996 4.16226428651361 6.25469669279627 5.40383278999405 5.8820686032799 5.40622959488631 5.17920689976147 5.10074262633975 4.46166358854694 4.73953855700078 5.16383623822465 4.63285243694052 4.64208533791632 4.32274581212638 4.64044367179809 5.04542259806857 5.4258384361787 0.242142406678629 0.251038408505738 0.247344146215165 0.243716424695001 0.24363568770838 0.252780875821339 0.240675867099562 0.247872795954874 0.240675867099562 0.241766955885937 0.242194332950505 0.241835348004927 0.240675867099562 0.243585137096058 0.253667781935305 0.246053893352986 0.248735111820356 0.243308225597084 0.246540932540900 4 0|4 /|- 241195 241868 241532.25 240675 242379 - gene protein_coding_gene FALSE TRUE AT4G00560.1|AT4G00560.2|AT4G00560.3 methionine adenosyltransferase regulatory beta subunit-related similar to Os02g0826200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048585.1); similar to C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases (ISS) [Ostreococcus tauri] (GB:CAL58455.1); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913)|similar to Os02g0826200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048585.1); similar to dTDP-4-dehydrorhamnose reductase [Metallosphaera sedula DSM 5348] (GB:ZP_01599692.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913)|similar to 3-beta hydroxysteroid dehydrogenase/isomerase [Anabaena variabilis ATCC 29413] (GB:YP_324154.1); similar to Os02g0826200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048585.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913) -0.539158102948258 -3.39285385985058 0.00609450725524308 1 3.23856459100257 10.2714657279519 -0.539158102948258 0.225459320362899
AT1G78890_at 8.78543461890379 8.84462709810248 9.11915448277431 9.0427293655316 8.7125849798446 9.0581341191544 8.21461267004623 8.49815835130708 7.66181182734359 7.87449975264628 7.62622110751457 7.59627167838552 7.8802885222457 7.96560422010763 7.77520441974757 8.14678404441356 8.4131753125759 7.89196257508901 7.47476202343236 0.185869215812002 0.187517964917499 0.180638976435808 0.183330887522245 0.186076464923830 0.188733765325137 0.182762471177516 0.190793788198453 0.200845035146436 0.183418534678481 0.188091448343379 0.184636176054023 0.192636338254198 0.193787855241043 0.195267244649553 0.179532565090196 0.187900343916384 0.186398069833178 0.209354829754006 1 1 + 29661593 29662396 29661801 29661470 29662958 + gene protein_coding_gene FALSE TRUE AT1G78890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16840.1); similar to Os08g0230000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061295.1); similar to At1g16840/F17F16.27-related [Medicago truncatula] (GB:ABE84583.1) 0.319511834719429 3.39280537937104 0.00609502678309149 1 3.23848939991877 16.5755778871167 0.319511834719429 0.0791423667018756
AT1G80160_at 0.769121912852347 0.667396629939656 1.55519367980235 1.76753160515538 1.39062569008335 1.59017677288657 1.01369806663645 1.07402889769178 1.05031712237374 0.5803976178753 0.908009722463014 0.671561477176385 0.945352181143538 0.672657489068559 0.18297078649537 0.494219117945651 0.568942766547697 0.618257887095615 0.571831036428289 0.212223483423731 0.210050493626561 0.207248615195099 0.210441605988852 0.211441313572709 0.211335116528011 0.207786144436234 0.212716161833552 0.210880386241653 0.217394508444144 0.211059114184808 0.209461381986788 0.211346941347104 0.214128151714894 0.217963479402471 0.216469535158273 0.222941210951589 0.211874924959610 0.207248615195099 1 1|0 +|/ 30156008 30156767 30156379 30155895 30157082 + gene protein_coding_gene FALSE TRUE AT1G80160.1|AT1G80160.2 lactoylglutathione lyase family protein / glyoxalase I family protein similar to lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G15380.2); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABD28405.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360)|similar to lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G15380.2); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABD28405.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588) 0.296692531567363 3.39108143430029 0.00611353047460427 1 3.23581551827126 1.91193583390653 0.296692531567363 0.0544217357300973
AT4G38600_at 7.04908980603744 6.74552831646805 6.98830847450196 6.87403156365908 6.82285801697686 6.88480282227276 6.36281672898037 6.78142744666614 5.93271931565624 5.81238792174897 6.21961884371992 6.44525788852145 6.55675770109498 6.53608569259661 6.35063107185346 6.82917628369194 6.17516594929079 6.18630439436077 5.96320898534082 0.138440448901109 0.136683261171199 0.145629129224343 0.139760371598555 0.140114599248418 0.142943076080683 0.139125922303363 0.141372618729810 0.137309090769975 0.142812059566608 0.141698347020512 0.139872697959369 0.135247468616535 0.142960272000112 0.137644104587302 0.137401371329623 0.142064296578421 0.137218315704047 0.142853157464780 4 4|0 -|/ 18041502 18045855 18043931.238 18041025 18049286 - gene protein_coding_gene FALSE TRUE AT4G38600.1|AT4G38600.2 KAK (KAKTUS) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. similar to UPL4 (ubiquitin-protein ligase 4) [Arabidopsis thaliana] (TAIR:AT5G02880.1); similar to putative HECT ubiquitin-protein ligase 3 [Oryza sativa (japonica cultivar-group)] (GB:BAD07806.1); similar to HECT [Medicago truncatula] (GB:ABE85276.1); similar to hypothetical protein AN1746.2 [Asper (GB:XP_659350.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain HEAT; (InterPro:IPR000357)|similar to UPL4 (ubiquitin-protein ligase 4) [Arabidopsis thaliana] (TAIR:AT5G02880.1); similar to putative HECT ubiquitin-protein ligase 3 [Oryza sativa (japonica cultivar-group)] (GB:BAD07806.1); similar to HECT [Medicago truncatula] (GB:ABE85276.1); similar to hypothetical protein AN1746.2 [Asper (GB:XP_659350.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain HEAT; (InterPro:IPR000357) 0.333693649353612 3.38888323006447 0.00613720800064037 1 3.23240571408845 12.9711812981403 0.333693649353612 0.092269280744088
AT1G34110_at 3.48465287222292 3.5978169245909 4.13449970663751 4.17474434008227 4.27843516109125 3.96475785398005 3.46433113099476 3.92655811570107 3.6581713725064 3.68013664255471 4.24514195785031 3.70131091814036 4.37165925575032 4.14248118096626 3.55393262778283 3.91573098781226 4.39889721069459 3.5215766117533 4.11568975130111 0.220053201618990 0.218786115097906 0.214493092449346 0.215806649354332 0.223905172783807 0.235751456345612 0.217296007469769 0.215733036311516 0.224486766312422 0.222017215355303 0.215129288276399 0.224648082369986 0.212794933010283 0.215472123010885 0.220553269412288 0.212931897169277 0.223973072052543 0.233752559381306 0.223563424931411 1 1 - 12417229 12418564 12417754.091 12417154 12421167 - gene protein_coding_gene FALSE TRUE AT1G34110.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1); similar to ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G56040.2); similar to putative Receptor-like protein kinase precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD46328.1); similar to receptor protein kinase [Pinus sylvestris] (GB:CAC20842.1); similar to CLAVATA-like kinase [Triticum aestivum] (GB:CAJ19346.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.341555796480030 3.38851103556485 0.00614122630446786 1 3.23182833743482 7.77789481281152 0.341555796480030 0.098879650834198
AT3G30280_at 2.35177591813637 1.90569177598549 2.2789569644483 2.08377215538432 2.05861068050377 2.18902347403044 2.55568972291272 2.44929255378792 3.01243185291479 2.45227327408602 1.89808613764352 1.95388491226038 2.00219872197406 2.13161851863189 2.72156596307760 2.23795291633485 1.95801615216512 2.56156306450942 2.57575441294219 0.188881022201341 0.191017551296695 0.189106770215783 0.188540794420759 0.194672963896703 0.191419713506855 0.191739466293120 0.196258078485788 0.194481413435567 0.201977637243990 0.187594146850372 0.186415239507333 0.187406813855228 0.193459615922843 0.193723995519455 0.192952522149720 0.197781899293825 0.189699951996133 0.186857983271546 3 3 + 11917590 11918147 11917880.909 11916845 11918176 + gene protein_coding_gene FALSE TRUE AT3G30280.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT4G15390.1); similar to Transferase [Medicago truncatula] (GB:ABE84610.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.330032027885155 -3.38818119782549 0.00614478956520436 1 3.23131665888478 4.66573364480147 -0.330032027885155 0.0891552411531878
AT3G63180_at 4.64394227071937 5.47035738087729 5.39974246864187 5.48894657547786 4.69855233519909 4.49010436367873 5.88692919140804 5.65559556581334 5.56023550592102 5.17282060616481 4.5788053047898 4.73555787554447 5.46378144018114 4.820335840782 4.67795501021363 5.24402342039211 5.18259411674847 5.13359406413856 5.5303892774439 0.239363954808753 0.237206108662477 0.234885284111730 0.232983466461891 0.233429002375378 0.237411301039394 0.233648573548919 0.244905574736565 0.247039688524882 0.2398940140652 0.237774808262905 0.238240788491441 0.235069754250732 0.239150862363656 0.234611751192093 0.234642851943043 0.243222282346303 0.237585822736178 0.239949386588468 3 3 - 23347295 23347824 23347545.909 23347067 23351290 - gene protein_coding_gene FALSE TRUE AT3G63180.1|AT3G63180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22380.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84664.1) -0.418218622766463 -3.38774421014037 0.00614951363416404 1 3.23063874526805 10.4171359426146 -0.418218622766463 0.153608325364366
AT1G22850_at 10.1706135165879 10.1698281901774 10.4337734408058 10.3660148360558 10.4964166081710 10.0762771153598 11.4771285649699 11.4431787461598 11.1034295250080 11.2134998347031 11.0785257602045 10.889006125064 11.0182591961267 11.1683175478283 10.8514641590463 11.1465578964125 10.8738458964149 10.9284368749658 11.1317592170384 0.0825005588723127 0.0821406934886065 0.0816014314032945 0.0828513778202856 0.080065778212346 0.0895374555928189 0.0807988174252618 0.0806314335475753 0.0866985529863961 0.0834622511855747 0.0819725184585425 0.0828575145227587 0.0815278397294665 0.0823451822863879 0.0824059640369877 0.0796236041373009 0.086257216039382 0.0838863831571442 0.0808510408135515 1 1|0 -|/ 8080929 8082205 8081693.778 8080471 8082864 - gene protein_coding_gene FALSE TRUE AT1G22850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19070.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54429.1); similar to Os01g0884900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045020.1); contains domain UNCHARACTERIZED (PTHR12677) -0.313663965642151 -3.3877194997231 0.00614978087793212 1 3.23060041073045 21.6510861477481 -0.313663965642151 0.073880688092312
AT4G21550_at 1.68829683946036 1.72766878807292 2.32588633083867 2.53385391243868 1.94977503443701 2.52165135980332 1.90946823307766 1.57365086551165 1.49860883110337 2.05782578808746 1.97689713969394 1.69743357201364 1.80801022771435 1.73596610010566 1.88862877587134 2.30473789127176 2.58110768658363 2.26090450231412 2.14609057641070 0.250989654997854 0.266863752296481 0.259763997471658 0.253872345302269 0.251205084391378 0.260473387325050 0.250267505657151 0.260635540861889 0.270474598719544 0.264037161118748 0.249471401657347 0.249471401657347 0.254684098197473 0.251835190388107 0.254936213785904 0.249471401657347 0.255073386934351 0.266098928064052 0.253176150600209 4 0|4 /|+ 11468038 11468391 11468230.9 11463999 11468691 + gene protein_coding_gene FALSE TRUE AT4G21550.1 transcriptional factor B3 family protein similar to HSI2 (High-level expression of Sugar-Inducible gene 2), transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT2G30470.1); similar to VP1/ABI3 family regulatory protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20873.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.369444741463825 3.3865097471069 0.00616287893095682 1 3.22872360185204 3.99505765486165 0.369444741463825 0.120470969919957
AT2G37400_at 3.37716126150351 3.95453592875861 3.21589158593638 3.10116884575536 3.34302331847123 3.33335098192146 3.95242729981467 4.35319929854307 3.53889773026663 3.72119318946808 3.66349075451073 3.76644539161149 3.57138263998132 3.4461908380898 3.54915799022165 3.53422412385985 3.58772996796843 3.84762509058475 3.85868272404298 0.209720983745897 0.202086273379602 0.199303004556989 0.199795695789012 0.198651763419985 0.201524313617953 0.196705028864250 0.206394573952116 0.204351409057272 0.197231417462432 0.196910452698044 0.195544280559060 0.200949591150521 0.208349453825318 0.199451588016605 0.200436114176189 0.204782888441066 0.203939164192357 0.200602730200685 2 2 - 15703462 15703883 15703664.273 15703234 15704481 - gene protein_coding_gene FALSE TRUE AT2G37400.1 chloroplast lumen common family protein similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT3G53560.1); similar to TPR repeat [Medicago truncatula] (GB:ABE81686.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.373224647894791 -3.38592058563597 0.0061692681486914 1 3.22780953656029 7.2423641805194 -0.373224647894791 0.123250226815411
AT3G02520_at 9.67866985150257 9.80731250148704 9.8601747654751 10.0202653078411 9.73585881265469 9.47546256149307 9.05194832263394 9.3359463167677 8.72916016880606 8.64437094358287 8.98620366809896 9.09101465452538 8.95520905358455 9.03757135352377 9.08636877517133 8.91272177113927 8.71851172427732 8.90792959608264 8.53477767697285 0.130858536593027 0.13029972990335 0.131199022927781 0.130658387528133 0.130334120450931 0.129663170700641 0.130992040279096 0.130588698057768 0.134155932538853 0.137295409008513 0.12849029526833 0.125906578332671 0.130411057524176 0.136423988834666 0.137098727117305 0.128413493856320 0.139885786771465 0.133486361470690 0.132470207658770 3 3|0 -|/ 527000 527588 527276.7 526444 528320 - gene protein_coding_gene FALSE TRUE AT3G02520.1 GRF7 (General regulatory factor 7); protein phosphorylated amino acid binding Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν). Identical to 14-3-3-like protein GF14 nu (General regulatory factor 7) (GRF7) [Arabidopsis Thaliana] (GB:Q96300); similar to GRF5 (GENERAL REGULATORY FACTOR 5), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT5G16050.1); similar to 14-3-3 protein [Manihot esculenta] (GB:AAY67798.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) 0.315154754265664 3.38565742264975 0.00617212423506775 1 3.22740123892290 18.4197269321507 0.315154754265664 0.0755595151494262
AT2G31530_at 5.61579518385961 5.61127627013604 5.49926534430579 5.43196588697342 6.3312976491683 5.77866715034047 6.76892268744269 6.4599662773198 5.64382489001447 5.21082175400264 4.7028526031471 5.14739379406743 5.18544315902045 5.14882929730866 4.77880886258082 4.88238161216583 4.825755677751 5.0975170285912 5.13078203726452 0.263271106628998 0.26119787801617 0.26587429171864 0.271100554175479 0.261562241245830 0.266502926987357 0.265684027013661 0.268420256508553 0.274805406703961 0.271157159457071 0.260666414812942 0.260666414812942 0.273788014072481 0.270851244105957 0.272293131685034 0.260666414812942 0.264847621787387 0.269169520880528 0.272649791717349 2 2|0 +|/ 13436462 13437315 13436829 13434485 13437542 + gene protein_coding_gene FALSE TRUE AT2G31530.1 EMB2289/SCY2 (EMBRYO DEFECTIVE 2289, SECY HOMOLOG 2); protein translocase similar to SCY1 (SECY HOMOLOG 1), protein translocase [Arabidopsis thaliana] (TAIR:AT2G18710.1); similar to Os05g0397700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055468.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07645.1); contains InterPro domain SecY protein; (InterPro:IPR002208) -0.355522284878678 -3.38527572243361 0.00617626920169207 1 3.22680902119035 11.0869440469047 -0.355522284878678 0.110186252651592
AT2G46950_at 2.04067900750081 1.95096114870045 2.28450440557543 2.35190120782473 2.02643714336908 2.35786360711319 2.05095204779570 1.64725777453053 1.64862797520797 1.94124825290041 2.17224540702856 1.88433180202894 2.23779393702987 1.99944741446065 2.57154368804476 2.20560555933939 2.55619333988041 2.68690745098971 2.27526213290145 0.205978149905044 0.207572859903115 0.212958712182390 0.206863117749230 0.213382003456534 0.220548366005789 0.217156175633121 0.213149365833033 0.215008194947285 0.208975531613664 0.208762314603697 0.205978149905044 0.211154460348466 0.207478397986961 0.205978149905044 0.207268884384998 0.211506934677776 0.209642676509799 0.210936081531946 2 2 - 19296565 19297139 19296788.455 19296207 19298683 - gene protein_coding_gene FALSE TRUE AT2G46950.1 CYP709B2 (cytochrome P450, family 709, subfamily B, polypeptide 2); oxygen binding member of CYP709B similar to CYP709B3 (cytochrome P450, family 709, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G27710.1); similar to CYP709B1 (cytochrome P450, family 709, subfamily B, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46960.2); similar to cytochrome P450 CYP709C1 [Triticum aestivum] (GB:AAT68297.1); similar to Os07g0635500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060386.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.333463275426203 3.38438598090225 0.00618594216584883 1 3.22542852079748 4.21097189039469 0.333463275426203 0.0924513975382102
AT1G78580_at 5.69702945945634 6.00341423316212 5.1067639235705 5.33183326428505 5.64971117235724 5.83615210043689 7.04100637708443 6.96675805464927 6.4421489304471 6.45973776166339 6.94878632312071 7.68367536165227 7.13737231922185 6.79605062406204 7.59008118097091 7.28824955792009 6.60386800973228 6.63525595088196 7.39938844040165 0.214103539957787 0.212446995081463 0.217973723068700 0.219483768141283 0.212670425037796 0.222348791454237 0.212446995081463 0.212446995081463 0.230571088820421 0.220029133394977 0.212446995081463 0.217467374971308 0.224851649015032 0.21896368797391 0.218183678363250 0.217207989829155 0.225976841785313 0.217357386867851 0.219326842332382 1 1 - 29557398 29558076 29557687.455 29557233 29565805 - gene protein_coding_gene FALSE TRUE AT1G78580.1 ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain. ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division. similar to ATTPS2 (Arabidopsis thaliana trehalose-phosphatase/synthase 2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G16980.1); similar to ATTPS3 (Arabidopsis thaliana trehalose-phosphatase/synthase 3), alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Arabidopsis thaliana] (TAIR:AT1G17000.1); similar to ATTPS4 (Arabidopsis thaliana trehalose phosphatase/synthase 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G27550.1); similar to trehalose-6-phosphate synthase, putative [Musa balbisiana] (GB:ABF70084.1); similar to SL-TPS/P [Sela (GB:AAD00829.1); similar to Trehalose-6-phosphate synthase component TPS1 and related subunits (ISS) [Ostreococcus tauri] (GB:CAL50152.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830); contains InterPro domain Alpha,alpha-trehalose-phosphate synthase; (InterPro:IPR012766) -0.313805605408871 -3.38373669046540 0.00619301081388637 1 3.22442105988653 12.8803381365166 -0.313805605408871 0.074393555344069
AT1G74080_at 1.99346985178535 1.72877868153975 2.63347274549426 2.79830446830300 1.94899658430867 2.23943902112707 1.78530874739837 1.27282171870150 2.14558488148956 1.63524865364178 1.65790040765434 1.69234040704890 1.6063822168649 1.50310759621876 2.08363606363169 1.70682652445807 1.55374519471439 2.15321654747767 1.41159361186849 0.249267472183927 0.24390646824107 0.249163347173242 0.268200767754175 0.240169585823787 0.246983829785863 0.251720891550087 0.24472576143063 0.246044605169044 0.247727215300799 0.245479336539676 0.239341432916137 0.240215095919382 0.239744774425802 0.247222080706874 0.243032073237580 0.242456300295009 0.249131065407695 0.257802064351142 1 1 + 27860509 27861048 27860779 27859360 27861195 + gene protein_coding_gene FALSE TRUE AT1G74080.1 MYB122 (myb domain protein 122); DNA binding / transcription factor Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB122). similar to MYB51 (myb domain protein 51), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G18570.1); similar to MYB1 [Dendrobium sp. XMW-2002-1] (GB:AAO49410.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.361896887855329 3.38107931416734 0.00622202721159301 1 3.2202974490894 3.78780068671151 0.361896887855329 0.115342027334997
AT3G29185_at 8.81712129336508 8.74823753558573 7.77465141688139 7.94490391285917 9.14455863178728 8.03536859239099 9.20457004723496 9.1144889818709 8.88474534684076 9.01463965083234 8.93066972409804 9.15145431690228 8.72670202105884 8.78059907982483 9.10557490634207 8.96885283475411 8.16425133662907 8.38192584527495 9.09927376507245 0.154547868771193 0.153560266938494 0.170432127492986 0.156143936103550 0.148045836551212 0.165990662728997 0.153119131395122 0.156541261305822 0.160055360898465 0.151277015766967 0.146216407115702 0.151839130809661 0.151883712288485 0.152379711036342 0.154306064477571 0.146114570418190 0.156720104615181 0.155215835833252 0.146114570418190 3 3|0 -|/ 11156352 11157010 11156657 11156166 11158463 - gene protein_coding_gene FALSE TRUE AT3G29185.1|AT3G29185.2 similar to hypothetical protein MtrDRAFT_AC147482g2v1 [Medicago truncatula] (GB:ABD32485.1) -0.48476649441956 -3.37988107175885 0.006235156527972 1 3.21843788792429 17.4858908910098 -0.48476649441956 0.195187558720998
AT3G50940_at 1.10287171343022 1.27708251614742 2.01445184661699 1.80741690722053 1.53203542559202 2.00947551940693 0.934109911776343 1.21621105384117 1.00052408469784 1.49860010165667 0.665118494920919 1.14334860434606 0.904670861824328 1.10395539016203 0.91255088408003 1.14142756656500 1.52389564514122 1.28639269341623 0.778091736608214 0.246490993995455 0.245594623493320 0.250776052590251 0.252825124241418 0.244287511114028 0.248216252334588 0.240226811330996 0.240226811330996 0.270893535616074 0.259104204845479 0.249531302658502 0.263841492043795 0.243800376564718 0.246784968436592 0.248520753568181 0.246462776241416 0.240226811330996 0.270394819288989 0.247396132190348 3 3 + 18945920 18946312 18946131.375 18944744 18946592 + gene protein_coding_gene FALSE TRUE AT3G50940.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50930.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.350520417906535 3.37950252158393 0.00623931024820617 1 3.21785039042319 2.57549452435956 0.350520417906535 0.10678229563288
AT1G55310_at 6.64187163606293 5.93562028592551 7.13575382697155 6.73695613181126 7.00755602816 7.04433560260874 5.8035307214307 5.75610017438869 6.14798210453736 6.54459529396963 5.84631470408411 5.99318541606192 6.30083456474534 6.36394410797902 6.08773716773935 6.63808131520266 6.77109731770823 6.33720396116757 6.63943907107171 0.191923393913188 0.197142705518776 0.194787520051611 0.201703294660293 0.198594758478651 0.211002405341526 0.212177853029755 0.207285729303985 0.193377505658966 0.200519349835412 0.208236815344387 0.192480505307359 0.195474083806204 0.191891620272841 0.205706585940792 0.191891620272841 0.205573766492267 0.197010593754508 0.197663777996679 1 1|0 +|/ 20634443 20636087 20635739 20633732 20636564 + gene protein_coding_gene FALSE TRUE AT1G55310.1|AT1G55310.2 SR33 (SC35-like splicing factor 33); RNA binding Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to RNA-binding re (GB:ABE89154.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.397582011206195 3.37858534580597 0.00624938589580135 1 3.21642691843688 12.8758682055177 0.397582011206195 0.140742812676748
AT2G45240_at 6.4393787935445 7.00210662171385 6.9264615083381 6.84696792426452 6.5083584400124 6.21137574356163 6.60093748226288 7.06858616657185 7.13349940123146 6.10036802689172 5.7101571264847 6.25260727569652 5.90051523947058 6.18504454893466 5.88638499473176 5.83135474854141 5.22387614406875 6.52608678507775 6.47662125395357 0.308301750855245 0.308174549002912 0.302075907907942 0.298917760339853 0.2977029449204 0.306565576315051 0.311666631426044 0.306762005202945 0.321985979059652 0.291482836062328 0.294713109462994 0.296800262366943 0.297933491684844 0.291482836062328 0.315994083489858 0.291482836062328 0.32677821090932 0.299943603974455 0.304814087747086 2 0|2 /|+ 18665158 18665944 18665528.167 18663013 18666151 + gene protein_coding_gene FALSE TRUE AT2G45240.1 MAP1A (METHIONINE AMINOPEPTIDASE 1A); methionyl aminopeptidase Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. Identical to Methionine aminopeptidase 1A (EC 3.4.11.18) (MetAP 1A) (MAP 1A) (Peptidase M 1A) (MAP1A) [Arabidopsis Thaliana] (GB:Q9SLN5;GB:Q548T6;GB:Q8LAQ1); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to methionine aminopeptidase 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47866.1); similar to Os10g0508400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065022.1); similar to methionine aminopeptidase 1 [Ananas comosus] (GB:ABB91774.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) -0.392560449064461 -3.37856287111963 0.00624963300069003 1 3.21639203655007 12.9553547109844 -0.392560449064461 0.137344346585447
AT1G78460_at 9.67035010630763 9.63225678721568 9.87755354416132 9.79914873904079 10.5576862626939 9.92471614302243 9.08630765560062 9.26219723729442 9.23321083638157 9.57082838544887 9.54856612852185 9.92102667929009 10.0220669482856 9.83300568518153 8.71840213006626 9.51147860325936 9.56679937653987 9.23927134862781 9.54780081841393 0.107937395881655 0.106391110330049 0.106946893653882 0.107849536753139 0.108506653695768 0.112701425375341 0.108640956850709 0.108835052166679 0.114243807149654 0.106391110330049 0.109027633906865 0.106391110330049 0.110640352956729 0.113501534471040 0.120579599266352 0.106391110330049 0.119226213949038 0.111235599651180 0.109470155853677 1 1 - 29523473 29524076 29523761.909 29523209 29524216 - gene protein_coding_gene FALSE TRUE AT1G78460.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT1G17100.1); similar to Os01g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042368.1); similar to novel protein (zgc:56136) [Danio rerio] (GB:CAI11708.1); contains InterPro domain SOUL heme-binding protein; (InterPro:IPR006917) 0.360730995674228 3.37838407003886 0.00625159924069644 1 3.21611452657068 19.2241222890269 0.360730995674228 0.114685341888916
AT3G12270_at 3.26077330369774 3.39865512996611 3.30094507978167 3.27436664048482 2.8643529379587 2.93533597764703 3.35631868453956 4.08355957861912 2.57156902690726 3.25015117272549 3.03405239800547 2.82738946807466 2.75018690649367 2.34390305771811 3.06133243385892 2.9080026626695 3.04593398857398 2.5125316436131 3.59698020320978 0.211130240508536 0.209323419491815 0.205541233729201 0.211652426792355 0.211862645605035 0.217501065638199 0.206544334960379 0.212447069040940 0.211436340361625 0.209630845936783 0.215553859295422 0.204815237689155 0.207660458550785 0.205754736582962 0.209284394474005 0.206912781983739 0.209581953377916 0.206769301665606 0.212415004482677 3 3|0 +|/ 3912470 3913064 3912823.2 3910640 3913336 + gene protein_coding_gene FALSE TRUE AT3G12270.1 methyltransferase similar to protein arginine N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G19670.1); similar to Os07g0640000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060419.1); similar to Protein ar (GB:BAD31262.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.38011337315458 -3.37813315922361 0.0062543595246959 1 3.21572509387850 6.28428010199857 -0.38011337315458 0.128764266968927
AT1G53300_at 3.93479754889189 3.80621576544429 2.95143616992031 2.74834407215775 3.10339658161378 2.79133101027737 4.80578254446494 4.78757088627989 4.46801504478866 4.75886238591255 6.08192402866388 6.58124864213715 5.0312227862872 5.00309370956377 5.74688700630932 5.31152458386941 4.6334124041645 5.38540588495355 4.72778815819006 0.270081425590170 0.270089635905702 0.276699504426656 0.27768052523141 0.268413698961587 0.287659295516898 0.271159791690153 0.269432625570812 0.298507444442182 0.283682253831978 0.276189239204366 0.277730744416736 0.277567660616386 0.282573478629942 0.277309726822729 0.268413698961587 0.288984954807024 0.290033664992663 0.276501465922512 1 1 + 19885202 19885781 19885513.182 19883090 19886043 + gene protein_coding_gene FALSE TRUE AT1G53300.1 TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1); binding similar to TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3), protein binding [Arabidopsis thaliana] (TAIR:AT2G42580.1); similar to TTL2 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 2), binding [Arabidopsis thaliana] (TAIR:AT3G14950.1); similar to Os01g0218200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042410.1); similar to Os01g0616300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043576.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE94078.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.307340021665719 -3.37798042028333 0.00625604042503296 1 3.21548802907493 8.67780686090162 -0.307340021665719 0.06824067007216
AT3G24490_at 5.89919909780252 6.45952625117477 5.31699879130456 5.75392089480452 6.47386118648907 5.73611538107164 6.10953612009373 6.35348441641591 6.26220419450811 6.40344554173907 5.81700892970843 5.8075572518268 5.98169152989335 5.89344895294415 5.89144926128595 6.31524906937744 5.97523257670008 5.42712837773732 6.62052723730962 0.226356878606077 0.226020820795713 0.229360711907868 0.224804127099377 0.227712791220267 0.232421067721176 0.227406528967515 0.232029470406826 0.224919183914162 0.225428690870624 0.221409645309320 0.222349031512348 0.228419851673654 0.221409645309320 0.225645822950794 0.221409645309320 0.226402742019936 0.230032861119801 0.221409645309320 3 3 + 8911523 8911940 8911672.091 8910777 8912203 + gene protein_coding_gene FALSE TRUE AT3G24490.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G11100.1); similar to Os01g0718900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044079.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1) -0.46267116106118 -3.37695241170483 0.00626736574826817 1 3.21389241977599 12.1714909681628 -0.46267116106118 0.182213255842825
AT1G28710_at 2.91026958969973 2.829650130525 2.61385855542153 2.33604477099599 2.48258522785521 2.60951272012936 2.73350308524914 2.69270958873681 3.03064194527196 3.2419614330833 2.73786854521232 2.86756230752142 2.68142126343820 2.81061168704232 2.95478935763895 3.01274871263102 2.88547441922951 2.82373228550695 3.20018637475791 0.200129461321135 0.198258625010164 0.196175618659289 0.196175618659289 0.20124487528697 0.199115476924283 0.197658221411602 0.198993397457756 0.197550737724802 0.197496146916524 0.200634560505958 0.204190770436968 0.201335046346413 0.201631371422424 0.197673574640809 0.196175618659289 0.19831557619299 0.206517212717746 0.199333731347432 1 1|0 -|/ 10086843 10087455 10087091.8 10086623 10088057 - gene protein_coding_gene FALSE TRUE AT1G28710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28700.1); similar to Os03g0731800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051166.1); similar to Putataive InsB from Escherichia coli [Oryza sativa (japonica cultivar-group)] (GB:AAN17394.1); similar to H0307D04.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66858.1); contains domain (Trans)glycosidases (SSF51445); contains domain PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN (PTHR10483) -0.295926646022809 -3.37612118174226 0.00627653854799376 1 3.21260217922794 5.65320303690092 -0.295926646022809 0.055121290908202
AT1G04270_at 9.75899544154231 9.90549256583812 9.43957172836726 9.42015016248678 9.38912626362423 9.53909965936106 9.88857199374055 10.1228358887289 9.55932177469814 9.64428592147651 9.55362190251877 9.93208602170442 9.37165037764817 9.24618974043272 9.91707140455897 9.13244719121889 9.2807850767272 9.40417303361494 9.59193314289004 0.102609032316657 0.103639862837592 0.0999352266184363 0.101701692213501 0.101179636385000 0.0996656519124947 0.107773178602446 0.105713798704991 0.105940169518579 0.101800025800457 0.107501580843796 0.103024855379343 0.101777163198437 0.105238965464306 0.102633342135273 0.107154991501731 0.112288952366767 0.107688668890602 0.099860209784103 1 1|0 -|/ 1141851 1142841 1142250.8 1141603 1143052 - gene protein_coding_gene FALSE TRUE AT1G04270.1|AT1G04270.2 RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome Encodes cytosolic ribosomal protein S15. Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to 40S ribosomal protein S15 (RPS15D) [Arabidopsis thaliana] (TAIR:AT5G09510.1); similar to Os03g0798600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051572.1); similar to ribosomal S15 protein [Retama raetam] (GB:AAL32040.1); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222); contains InterPro domain Ribosomal protein S15, eukaryotic and archaeal form; (InterPro:IPR005713) -0.295373769235595 -3.37524566997889 0.00628621486244695 1 3.21124314775958 19.2221138162484 -0.295373769235595 0.0545081525959734
AT1G30040_at 3.53047870499563 3.65462096104804 4.09834791840437 4.51090651421239 2.90782581117058 3.09289031113615 2.98824059086411 2.94707703686018 3.17767344214528 2.67059651351861 3.56452670491794 3.11223869440622 2.95626309034735 2.71132562314216 3.599317464537 2.78080373582673 3.1897464695006 3.20250185520747 2.7665409862874 0.210352923540548 0.206340517937156 0.208023138040007 0.217986089619555 0.216432162031901 0.214426980514156 0.214935563816411 0.214464722657719 0.217787235251937 0.210432340441206 0.207173485309651 0.206340517937156 0.224627339407777 0.223552256255296 0.206813103829170 0.206340517937156 0.212594195023671 0.206340517937156 0.2094670285496 1 1|0 +|/ 10538492 10539523 10538983.1 10537632 10539815 + gene protein_coding_gene FALSE TRUE AT1G30040.1|AT1G30040.2 ATGA2OX2; gibberellin 2-beta-dioxygenase Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. Identical to Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13) (Gibberellin 2-beta- hydroxylase 2) (Gibberellin 2-oxidase 2) (GA 2-oxidase 2) (GA2OX2) [Arabidopsis Thaliana] (GB:Q9XFR9); similar to ATGA2OX3 (GIBBERELLIN 2-OXIDASE 3), gibberellin 2-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT2G34555.1); similar to Gibberellin 2-beta-dioxygenase (Gibberellin 2-beta-hydroxylase) (Gibberellin 2-oxidase) (GA 2-oxidase) (GB:Q9XG83); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|Identical to Gibberellin 2-beta-dioxygenase 2 (EC 1.14.11.13) (Gibberellin 2-beta- hydroxylase 2) (Gibberellin 2-oxidase 2) (GA 2-oxidase 2) (GA2OX2) [Arabidopsis Thaliana] (GB:Q9XFR9); similar to ATGA2OX3 (GIBBERELLIN 2-OXIDASE 3), gibberellin 2-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT2G34555.1); similar to Gibberellin 2-beta-dioxygenase (Gibberellin 2-beta-hydroxylase) (Gibberellin 2-oxidase) (GA 2-oxidase) (GB:Q9XG83); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.320187561353735 3.37408598830146 0.00629905537896022 1 3.20944291863932 6.47189553211282 0.320187561353735 0.0814569611475013
AT2G24010_at 1.86864886477262 1.93928677571625 1.6028743003866 1.35771428292894 1.61814117918487 1.83963934719540 2.08312431922923 2.30080411014279 2.4404363728346 2.31985566049072 2.2803297198932 1.90853637271952 2.16222587300156 1.94126964003784 1.85022593969968 2.28791052280856 1.96360297774867 1.93052976802744 1.88058540022227 0.191462867608611 0.188908586639627 0.194706987609723 0.197307745530596 0.189661812697368 0.192939317249419 0.197322864654696 0.192640282985933 0.204578068457863 0.199356644212828 0.190648450161326 0.198035930791460 0.191383578476478 0.201352808621033 0.188908586639627 0.190567286887690 0.204608270474095 0.215221519536375 0.198447779250295 2 2 + 10223889 10224536 10224139.091 10221794 10224622 + gene protein_coding_gene FALSE TRUE AT2G24010.1 SCPL23 (serine carboxypeptidase-like 23); serine carboxypeptidase similar to BRS1 (BRI1 SUPPRESSOR 1) [Arabidopsis thaliana] (TAIR:AT4G30610.1); similar to SCPL22 (serine carboxypeptidase-like 22), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G24000.1); similar to Os02g0794500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048377.1); similar to putative carboxypeptidase D [Oryza sativa (japonica cultivar-group)] (GB:BAD19262.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.308210349740868 -3.3740156649754 0.00629983489293659 1 3.20933374913418 3.95338147890688 -0.308210349740868 0.0695539995911611
AT2G47180_at 7.66705727181778 7.70515176377855 7.15291621881814 7.554327743581 7.58190337402951 7.58631537486459 6.88774622065075 7.35812692703182 6.17986325019817 7.39279626885673 7.63828400475016 7.48762217849308 7.7567283804723 7.74854897127553 7.14563015950465 7.60274113460149 7.40307866085568 7.35825490178808 7.07089798379037 0.188357350947336 0.187825502777727 0.199227229588367 0.18847988936609 0.181058380731527 0.186436977477681 0.184553397549798 0.195212792999662 0.208095124501723 0.198404513257786 0.189814350679232 0.181058380731527 0.192069848629196 0.193777341286940 0.190716887448025 0.181058380731527 0.207069766644256 0.193651854482025 0.188107440033117 2 2|0 -|/ 19376155 19376825 19376526.7 19375868 19377511 - gene protein_coding_gene FALSE TRUE AT2G47180.1 ATGOLS1 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 1); transferase, transferring hexosyl groups similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G56600.1); similar to galactinol synthase [Brassica napus] (GB:AAD26116.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.350385173344729 3.37282363699672 0.006313063209137 1 3.20748319557850 14.6360915534462 0.350385173344729 0.107218485414481
AT4G34950_at 11.5016073064558 11.6545375537708 11.2342239381876 11.4043148824556 11.7787143360847 11.6437354948918 10.8539587521287 10.8681639744281 11.5022542025336 11.2157481196366 11.9958669733198 11.1223001694230 10.7480322769661 11.4357421705786 11.4365630993712 10.5971805118072 11.1645787902705 11.5667885822159 10.2105098934221 0.0756340063281788 0.0743973976174066 0.0774414041261025 0.0759523898788567 0.0775133112280404 0.080633460660012 0.0743973976174066 0.0756781077094274 0.083722842776471 0.0771649675545879 0.0775098786419192 0.0750871931819131 0.0743973976174066 0.0756788220898091 0.0763469585676777 0.0743973976174066 0.0799553613538417 0.0778900530444992 0.0785252376613354 4 4 - 16642639 16643550 16643051.091 16642321 16644823 - gene protein_coding_gene FALSE TRUE AT4G34950.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os09g0536700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063787.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.288945549711196 3.37150458351675 0.00632773429591338 1 3.20543531811744 22.4846831849378 0.288945549711196 0.0460272268955195
AT4G15790_at 3.81395835886042 4.28423060133458 3.55870896061666 3.78118225541069 3.38114112125111 4.16307656475562 4.65891856764631 5.19328628859436 4.4932207499122 4.47764168331001 4.53528066375306 4.47450824820043 3.86893703546278 4.7498382514294 4.43407451720843 4.12412649198427 3.98327177227939 4.60619020303358 4.58955452590319 0.259013216766362 0.242536516112802 0.243914743969841 0.247319828268993 0.243919680148865 0.250737422972109 0.238001623771357 0.241634314523548 0.249037262357752 0.235760249299318 0.242160460617637 0.241912300960255 0.23732906997241 0.239668244325222 0.235760249299318 0.238239979101808 0.24805018524552 0.235760249299318 0.242884333672386 4 4|0 +|/ 8982401 8984025 8983468.571 8982253 8984216 + gene protein_coding_gene FALSE TRUE AT4G15790.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99455.1); similar to Os12g0541400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066955.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.469840908528305 -3.37147230014362 0.00632809380263423 1 3.20538519539803 8.53789653195574 -0.469840908528305 0.186996935213905
AT1G35910_at 0.909341534119611 1.09850868215452 0.803094399048966 0.920372346652638 0.89049357070476 0.783119469948301 1.51299811111900 0.868193648426816 1.65899161753154 1.48152657218066 1.14247469567815 1.42863418663759 0.995808276432293 1.19419768266524 1.0857852317344 1.04900484148403 1.0876130566638 1.46898263976053 1.85902957207026 0.196518262966925 0.200209268993946 0.208108001044476 0.197871966395687 0.201087878698889 0.201713648714367 0.201508223620738 0.197434134723711 0.199493756070243 0.209050303815046 0.206914633755533 0.199987834733865 0.202688141233856 0.196518262966925 0.206306267557257 0.199427684228666 0.210750865454935 0.203989124410073 0.196518262966925 1 1 - 13364443 13365466 13364901.727 13364219 13366271 - gene protein_coding_gene FALSE TRUE AT1G35910.1 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT5G65140.1); similar to Os02g0753000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048143.1); similar to Os08g0409100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061780.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) -0.366471945789233 -3.37140722184586 0.0063288185762218 1 3.20528415549433 2.39730446875990 -0.366471945789233 0.119500519463374
AT3G21290_at 4.74366758739189 5.13224651859107 4.73287008810162 5.18991894687739 5.12795302061121 4.9897955051934 5.12782803165889 5.03341031368868 5.48593433524207 4.97487392598437 4.46551938022074 4.92880460559914 4.64918326786951 4.4188553871635 4.44211521704295 4.71379043120255 4.75421622243079 4.7490680708117 5.56785382830572 0.211938203822947 0.202949055532465 0.219009359350455 0.208171215603262 0.204701719698788 0.220234831962013 0.209945086430832 0.214355955760648 0.217619734514821 0.214249198793947 0.213790884360152 0.20633378111993 0.207197425283597 0.213015499489117 0.215114072026998 0.205991843966456 0.214365230692686 0.216084873108034 0.205352143718888 3 3 + 7487394 7488649 7487739.273 7482137 7488941 + gene protein_coding_gene FALSE TRUE AT3G21290.1 dentin sialophosphoprotein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Os03g0187100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049207.1); similar to PREDICTED: similar to Dentin sialophosphoprotein precursor (Dentin matrix protein 3) (DMP-3) [Macaca mulatta] (GB:XP_001098430.1); contains InterPro domain Occludin and RNA polymerase II elongation factor ELL; (InterPro:IPR010844) -0.350923506510752 -3.37108413642015 0.00633241801927408 1 3.20478253165449 10.0012519694993 -0.350923506510752 0.107779779703324
AT2G37300_at 2.42726898859768 2.28148153972624 1.58494721069272 1.97117316006062 1.49656649536259 2.01717515905072 2.33658419570341 2.87746528599587 2.28200355240574 2.71961649623804 2.38616341172206 2.91068581534831 2.26054541797062 2.72208028659069 3.13661308412841 2.45648638923016 2.11344705074323 2.1429763877033 2.85445660285591 0.204509263525806 0.208669513572702 0.211325514970591 0.208644963595367 0.211275694488817 0.208423370319547 0.226710034258986 0.209881933790051 0.206454945080537 0.210644918018283 0.2083347544085 0.210260402860474 0.211482187283601 0.204509263525806 0.206666750835640 0.214587417759125 0.213093998043933 0.208640196287617 0.207948650607288 2 2 - 15669927 15670199 15670090 15669678 15670524 - gene protein_coding_gene FALSE TRUE AT2G37300.1 unknown protein -0.407900991475551 -3.37040313085336 0.00634001185488426 1 3.20372517388197 4.69149122819681 -0.407900991475551 0.148263536531571
AT1G15790_at 6.28571524196278 6.20966943437621 6.92162783094879 6.63945511919311 4.99896217554777 4.72946847854071 2.53583207965630 2.89239499505418 4.11989178936925 3.23605773855339 2.7595547712265 2.27804542370518 2.73990603432309 2.82940151297219 2.49831971124051 3.05753870262494 2.88221315520979 3.05920355786806 2.9653600749614 0.282967430224683 0.280411094959303 0.284651357197302 0.284007769422769 0.268034062167343 0.299712460878483 0.259211230367948 0.259351995278320 0.265422564356320 0.259584535060761 0.260097709786255 0.259875665243494 0.256246460730356 0.264781858590303 0.265707463416495 0.257217145583125 0.276027096093241 0.25805419980711 0.256246460730356 1 1|0 -|/ 5438753 5439607 5439100.667 5438248 5440082 - gene protein_coding_gene FALSE TRUE AT1G15790.1|AT1G15790.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15780.1); similar to Os08g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062533.1); similar to CTV.22 [Poncirus trifoliata] (GB:AAN62354.1); contains domain no description (G3D.1.10.246.20); contains domain Kix domain of CBP (creb binding protein) (SSF47040) 0.332030893823414 3.37029912907678 0.00634117238970503 1 3.20356369331687 8.25337036588046 0.332030893823414 0.0924131947559158
AT3G44720_at 5.81928674439334 6.17518327329364 7.81481316072565 7.89693791967455 6.44627175728051 6.16640920890128 5.38145602265578 5.79641335948619 7.04184708104951 5.97446587918993 6.45392453421925 6.49236387378549 5.53235786815678 6.15070331279601 6.17066224055894 5.75409053466578 5.29378878269620 5.84909986234221 6.63361022513849 0.231985066616984 0.219018180222042 0.224905395898033 0.224440711512075 0.21898453786706 0.236050075327914 0.225324512468308 0.219583200671769 0.224874340621316 0.218860223331009 0.220687883586456 0.219751285101303 0.21520255701449 0.216544366894612 0.215953432254506 0.216353548666690 0.232104930971287 0.224838846985742 0.217569241732153 3 3 + 16283463 16283939 16283658.273 16282639 16284331 + gene protein_coding_gene FALSE TRUE AT3G44720.1 prephenate dehydratase family protein similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT5G22630.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) 0.350086321357433 3.36984447666541 0.00634624831644863 1 3.20285775812327 12.6931455664406 0.350086321357433 0.107226805304852
AT2G31730_at 1.89030632704283 2.29991311764541 2.84221587240647 2.59677034913372 2.28889632528483 2.75757905520633 1.91949515113251 1.9908940680627 3.89460208964104 3.00979018297621 4.58502521043682 3.48994107801428 2.52534358243542 3.8287645460822 3.41529111783499 2.55195003661523 2.09298613298462 3.56693603264748 2.48273044921366 0.243325085549245 0.236377304902929 0.238932395753129 0.231561367607702 0.247024265309327 0.236083069295268 0.236025925513990 0.236053994720134 0.238667980935858 0.237801671507967 0.237322268538545 0.238507622686473 0.245563777982564 0.242146932785652 0.244553569053129 0.234376124749493 0.231561367607702 0.259360711197415 0.240312066862162 2 2 - 13494886 13495248 13494990.111 13494645 13496756 - gene protein_coding_gene FALSE TRUE AT2G31730.1 ethylene-responsive protein, putative similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G05710.3); similar to ER33 protein [Lycopersicon esculentum] (GB:AAD46413.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.362101022195692 3.36917125079999 0.00635377212305813 1 3.20181241734199 5.51629409544352 0.362101022195692 0.116446956209106
AT3G57380_at 1.21638132205006 1.48274966933528 1.76821339373705 2.04839658425373 1.57262633285794 1.49851920568606 1.10579879425268 0.766013746757231 1.10643823058730 1.26014548411484 1.22307308041417 0.622445405524381 0.810382364370234 1.05229143287038 1.30492190423658 1.08501912196726 1.04715747537521 1.32841042433202 0.574321841450485 0.203238046237060 0.205658681967181 0.206395982717813 0.218931827723636 0.205508150087934 0.202692018453779 0.198206851915568 0.197655449003977 0.200594228778417 0.204181310460921 0.200955166363000 0.201193017353725 0.199857835575502 0.202868052758924 0.197837031575964 0.199731402210403 0.209495848902490 0.208475745905239 0.203448346820307 3 3 + 21242143 21242620 21242396.091 21240779 21242706 + gene protein_coding_gene FALSE TRUE AT3G57380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41640.1); similar to glycosyltransferase [Medicago truncatula] (GB:CAI30145.1); contains InterPro domain Protein of unknown function DUF563; (InterPro:IPR007657) 0.329056897560143 3.36844366346731 0.0063619137208958 1 3.2006826296893 2.45209463270983 0.329056897560143 0.0899885019717103
AT4G15530_at 10.8721119639176 10.8526689936743 11.5337581653291 11.4596977543587 10.6720333796676 10.6429404628361 11.3413576289278 11.4487883622365 10.5357420826476 11.1048264203293 10.0711966762303 9.49752292598997 10.459152418432 10.5841895664758 9.01172963486926 11.0848084135472 11.0122210944500 10.4271770350608 10.6722382739019 0.0811065307733349 0.0782663076714861 0.0821573399730714 0.0785435278801375 0.078006270037486 0.0820458393335576 0.0769376356547349 0.0799033156839922 0.0816793059520903 0.0803121120617472 0.0776466250574005 0.0779585200307497 0.0773161220822638 0.0782740878544413 0.0889997515980818 0.0766154963166139 0.0839383765832448 0.0826423457531165 0.0792559916440462 4 4|0 -|/ 8864837 8865618 8865240.667 8864826 8870934 - gene protein_coding_gene FALSE TRUE AT4G15530.1|AT4G15530.2|AT4G15530.3|AT4G15530.4|AT4G15530.5 PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase/ pyruvate, phosphate dikinase|PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase|PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.||The product of this shorter transcript (no chloroplast targeting sequence) was shown to accumulate in the cytosol, whereas the longest transcript was found in the chloroplast. They were also found in slightly different tissues. similar to Pyruvate, phosphate dikinase, chloroplast precursor (Pyruvate, orthophosphate dikinase) (GB:Q42910); similar to Pyruvate, phosphate dikinase, chloroplast precursor (Pyruvate, orthophosphate dikinase) (GB:Q42736); similar to Pyruvate, phosphate dikinase, chloroplast precursor (Pyruvate, orthophosphate dikinase) (Cold-sensitive pyruvate, orthophosphate dikinase) (GB:Q39734); contains InterPro domain PEP-utilizing enzyme; (InterPro:IPR000121); contains InterPro domain Pyruvate phosphate dikinase, PEP/pyruvate-binding; (InterPro:IPR002192); contains InterPro domain Pyruvate, phosphate dikinase; (InterPro:IPR010121); contains InterPro domain PEP-utilising enzyme, mobile region; (InterPro:IPR008279) -0.277030084151111 -3.36765982685138 0.0063706966828022 1 3.19946545485244 21.6226372453309 -0.277030084151111 0.0233788677220795
AT3G16120_at 1.99176856459024 1.86300555816589 1.71094395408766 2.17633452494578 1.49216979718966 1.36798692319256 1.70122340420752 2.21538711464252 2.24606487710288 2.04228685828765 1.35182866930371 1.78074783850976 1.60828206600575 1.67260431979629 1.81815103503412 1.33215204389017 1.62467152364113 1.89301584944744 2.0810564849441 0.202882455711172 0.203884297839531 0.206077595949197 0.204303877033392 0.202653393203636 0.200852029728890 0.201665259176512 0.213767790206643 0.197848976746923 0.204315132464971 0.19790197888367 0.20017449339159 0.202977641667621 0.202119813830998 0.207511584268607 0.201214362534163 0.210642851025606 0.205455130747677 0.213402911238962 3 3|0 +|/ 5465061 5465352 5465213.2 5464775 5465537 + gene protein_coding_gene FALSE TRUE AT3G16120.1 dynein light chain, putative similar to dynein light chain type 1 family protein [Arabidopsis thaliana] (TAIR:AT1G52250.1); similar to putative dynein light chain [Oryza sativa (japonica cultivar-group)] (GB:BAB61206.1); contains InterPro domain Dynein light chain, type 1; (InterPro:IPR001372) -0.371970882894478 -3.36583629199201 0.00639117758610223 1 3.19663361589383 3.69401135095194 -0.371970882894478 0.123943147141683
AT2G29290_at 10.0013402781843 10.0109864671014 9.72021134591449 9.72784033601424 10.3574610741309 10.0358375506040 10.9363361514379 10.9019810163970 10.6246430154120 11.3579860698654 10.8351483054774 11.0724711794594 11.2260638700393 10.8145867269595 10.8311881403518 11.3105086130754 11.2113046838331 11.0388325684650 11.4121047889020 0.0897670486593672 0.0867782699612299 0.0955308145291608 0.0943422074180542 0.0851325861818782 0.0922486321005578 0.0864059016083423 0.086888557281166 0.0977799554998937 0.085917911415006 0.090655116235451 0.0849959577821127 0.0882557613704555 0.0926606651830006 0.0927255145381356 0.0849959577821127 0.0905362537506362 0.09041085810323 0.0849959577821127 2 2|0 +|/ 12593858 12594606 12594237.5 12593575 12594804 + gene protein_coding_gene FALSE TRUE AT2G29290.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to SAG13 (Senescence-associated gene 13), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G29350.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.295694174358216 -3.36547678920806 0.0063952232577643 1 3.19607530081925 21.2985447619817 -0.295694174358216 0.0560155296398938
AT3G01730_at 1.93155831151857 2.04825610446159 2.20636408676953 2.33426995970402 1.5814959969042 2.17132479472759 2.00050465383994 2.07737394332626 2.22942993863185 2.64376072347246 1.77351868581413 1.48959551787377 1.74790332724562 2.09332170387766 1.57025828937743 2.09841691185175 1.07336397608527 2.08982292659827 2.62735307786643 0.22640180767975 0.219755463535345 0.224882457715487 0.225017681432584 0.218945372851528 0.219924184002990 0.218406991684932 0.221420997044188 0.220168320033695 0.226536410948411 0.226747173863193 0.216868940917540 0.218223487366333 0.218669399374735 0.227820194576655 0.224532895822027 0.234246254322772 0.224383244045444 0.218885542918741 3 3 + 266652 266870 266746.636 266565 266994 + gene protein_coding_gene FALSE TRUE AT3G01730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14330.1); contains domain UNCHARACTERIZED (PTHR23246); contains domain gb def: CG15741-PA (PTHR23246:SF35) -0.34960781153834 -3.36546893341927 0.00639531169227913 1 3.19606310051406 4.16499668840516 -0.34960781153834 0.10720805360025
AT2G01900_at 0.409929160869689 0.345809284229343 0.586194444128874 0.86941963610524 0.676697463415017 0.736023241797642 0.539303784595825 0.436792301811812 0.617147410304627 0.0667561797340336 0.669015412825804 0.337329243411129 0.491411363494691 0.812662157641534 0.772198507386844 0.361571685997203 0.535692358489055 0.813676428054288 0.200123247781802 0.196255718948482 0.197767213220397 0.204137897758186 0.201316540543307 0.200583182106681 0.197443952778896 0.202841461341867 0.195689522750852 0.198594862865146 0.201433242680786 0.202070089175060 0.200607429701964 0.210327247541629 0.196254003855143 0.199459141668016 0.20079411444083 0.201850165484095 0.201066035927311 0.201388667177483 2 2|0 +|/ 407881 408850 408344.667 405917 409013 + gene protein_coding_gene FALSE TRUE AT2G01900.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G37440.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE89232.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.294322047770387 3.36529439213174 0.00639727686845308 1 3.19579203082528 1.02195629325387 0.294322047770387 0.0542729941281513
AT1G02080_at 9.15186000646087 9.09558791514137 9.52765559485113 9.45881106193358 9.68491424044744 9.3018074973987 9.14172676864714 8.90891010456554 8.91453014906097 9.28266734806364 9.49738924725322 9.44372943914096 9.24873583956898 9.40671021604699 9.35669223383995 9.50902039946369 9.29990748165377 9.2262763145592 9.27906276989704 0.109118596925112 0.105771844715452 0.109996329870661 0.105644583529804 0.108322521508712 0.105011358651112 0.109266560419745 0.111795467419645 0.115714675718278 0.108064064416248 0.112373643667449 0.108985758266982 0.106440025114832 0.112200495991640 0.104654688042732 0.105943698727712 0.110113719842677 0.111103236677638 0.105967146871174 1 1|0 +|/ 385948 386602 386262.1 373694 386820 + gene protein_coding_gene FALSE TRUE AT1G02080.1 transcriptional regulator-related similar to transcriptional regulator, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54975.2); similar to CCR4-Not complex component, Not1 [Medicago truncatula] (GB:ABE86980.1); similar to putative transcription regulatory protein [Oryza sativa (japonica cultivar-group)] (GB:AAK55455.1); contains InterPro domain CCR4-Not complex component, Not1; (InterPro:IPR007196) 0.316790062027138 3.36446003637955 0.00640667949269241 1 3.19449621144546 18.5500646830714 0.316790062027138 0.0790919440660827
AT1G29060_at 4.2368193597436 4.67073554414607 5.27575210837399 5.23296098207208 5.70474150068193 5.08154572271603 4.90533556973949 4.62325841450907 4.7288944678979 4.14587271843001 4.62866685410421 4.21865720587444 4.24406730753644 4.93918518551552 3.49523304534767 4.48167147797548 4.12209837089194 4.04857061176793 3.71495665618307 0.263692264795805 0.259542931186029 0.264481911278531 0.256248541080008 0.258654819715372 0.271257542303289 0.254832941178812 0.257106187216942 0.261399981789147 0.254555125243144 0.258021905034869 0.254555125243144 0.25962308502196 0.258300620346579 0.254913370878029 0.254555125243144 0.258135543676798 0.269290274776341 0.254555125243144 1 1|0 +|/ 10147867 10149409 10148739 10147679 10149668 + gene protein_coding_gene FALSE TRUE AT1G29060.1 Identical to Bet1-like protein At1g29060 [Arabidopsis Thaliana] (GB:Q8L9S0;GB:Q9LP36); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14600.1); similar to Os07g0577900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060092.1); similar to unknown [Striga asiatica] (GB:ABE66395.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.395203499816417 3.36289192461485 0.00642438931742891 1 3.19206067294197 9.2008153360213 0.395203499816417 0.140382945379094
AT3G61830_at 4.44173005297192 4.69545374128418 4.26413856270815 4.24281980983442 4.24208926720120 4.55788804568152 4.47433371337383 4.68500519562211 4.81436311038728 4.31867053888911 4.09021641547407 4.19133121791494 4.36227241273672 3.85438612269137 4.60006239611656 4.16814662663724 4.17663903659188 4.01507396734783 4.57144023149738 0.193043366228817 0.200185076651403 0.195726399971250 0.197591968277619 0.200818127131585 0.196799346906362 0.195420080342882 0.200007334561315 0.196301738738763 0.202989749534880 0.195573767093133 0.194624201204883 0.202318413645516 0.191829173791709 0.19716733457079 0.191829173791709 0.204617088756415 0.205759361593514 0.207223635795166 3 3 + 22901372 22901877 22901623.909 22898864 22902410 + gene protein_coding_gene FALSE TRUE AT3G61830.1 ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor Identical to Auxin response factor 18 (ARF18) [Arabidopsis Thaliana] (GB:Q9C5W9;GB:Q9M355); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.1); similar to Os02g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047137.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.316644345137893 -3.36278499553406 0.00642559876726583 1 3.19189458769084 8.82564429093304 -0.316644345137893 0.0791035009514828
AT2G35190_at 2.61273061735869 3.22940692258662 2.19443817923118 2.02821054170692 2.00590786034175 2.36055143780478 4.34859642051649 3.88325484264948 3.79446564783518 4.15199089127443 5.68494228195031 6.22284632339871 4.16128380226007 4.42309505430326 5.88921886244524 3.58637160619233 3.41459374855784 4.40146012579622 4.56467367536184 0.265755124828371 0.263037654117761 0.269405627768652 0.264555185160463 0.268248154498647 0.274884485241015 0.273675570109215 0.271505874024825 0.285694656740613 0.274819587805112 0.281970839567509 0.269220369947237 0.263037654117761 0.267856177223342 0.269506076475517 0.266158799124764 0.277793993798752 0.294320766370082 0.268317373690298 2 2 + 14838553 14840032 14839458.091 14837705 14840398 + gene protein_coding_gene FALSE TRUE AT2G35190.1 NPSN11 (NOVEL PLANT SNARE 11); protein transporter plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate. Identical to Novel plant SNARE 11 (AtNPSN11) (NPSN11) [Arabidopsis Thaliana] (GB:Q944A9;GB:O82173); similar to NPSN13 (novel plant SNARE 13) [Arabidopsis thaliana] (TAIR:AT3G17440.1); similar to putative NPSN12 [Oryza sativa (japonica cultivar-group)] (GB:BAD53572.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) -0.409310229275408 -3.36161042386443 0.00643889941166108 1 3.19007015466471 7.27956370965956 -0.409310229275408 0.149893327142511
AT2G01650_at 8.4270374963463 9.04082014716365 9.11404134755045 9.37557560699221 8.9258168684264 8.50914325856668 7.83853392003867 7.91397221353825 6.87282163862336 6.6917994929596 6.5756841033858 7.11897065004269 6.58514490095842 7.15749721752306 6.01747936665224 7.37145307244206 7.27056923579352 7.14924542165644 6.84249048281062 0.194429397484947 0.186580901964727 0.193845855671936 0.189422200127736 0.190549703329212 0.190386159389972 0.188813984241042 0.189975050336375 0.204515792270257 0.192781832238896 0.208550030030746 0.195232242616025 0.190337447439083 0.209469022763744 0.19452083407515 0.19104826487527 0.209083710097537 0.193403854815969 0.189439327443278 2 2 - 284883 285566 285115.727 284671 286492 - gene protein_coding_gene FALSE TRUE AT2G01650.1 PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2); nucleic acid binding / zinc ion binding encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. similar to PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G27310.1); similar to Os09g0401600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063122.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR01744.1); similar to Os03g0636600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050722.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain PUG; (InterPro:IPR006567) 0.389719142018905 3.36157189252018 0.00643933621057768 1 3.19001030316741 15.4971806244218 0.389719142018905 0.136750106287442
AT4G31985_at 9.51735195147987 9.62882337150168 8.95836117667025 9.23808178746856 8.68191308570118 8.62281639234973 8.93404492128574 9.69826371586988 8.78704698595725 9.00948624743414 8.95896908024056 9.40096102195088 8.6831334796439 8.81047978613903 9.53090151317195 8.52281430506597 8.0309418629082 7.84465921217454 9.05306831941902 0.152455599514620 0.148131585688293 0.147032847668556 0.147366676770294 0.146307630125093 0.167753287772609 0.148169522392815 0.149767642195171 0.152835393953983 0.155267360805161 0.158102796731727 0.150038491530137 0.156966788240743 0.162668084629147 0.146307630125093 0.153976599493115 0.156984455207367 0.152353994522997 0.150922696328459 4 4 + 15470096 15470348 15470294.727 15469901 15470565 + gene protein_coding_gene FALSE TRUE AT4G31985.1 60S ribosomal protein L39 (RPL39C) Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39B) [Arabidopsis thaliana] (TAIR:AT3G02190.1); similar to putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD19088.1); similar to Os02g0797200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048394.1); similar to 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD72315.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) -0.398168765547558 -3.36125338600282 0.00644294802410468 1 3.18951555653758 17.9963194087569 -0.398168765547558 0.142514721933232
AT2G47770_at 1.73304866621243 1.89598704219015 1.96769492557609 1.55417788789914 1.75023504587531 1.51486637997445 1.70685410681252 1.88183850190756 2.33090674250205 2.70281831931755 1.76699900775669 1.61682747991414 1.70025464446802 1.90981511190000 1.37263100345531 1.83133143974087 1.92024751198824 2.25155276812308 2.01642765572683 0.203750902758363 0.211815871345761 0.208371612973366 0.214092838682593 0.210076821090618 0.205563480785438 0.208225638405176 0.208491201604155 0.216193754121842 0.209449769662275 0.215379481661333 0.208755248846684 0.204906268695957 0.207615330245510 0.21898535026688 0.204541937139093 0.202989865215898 0.203843361996559 0.226897989013714 2 2 + 19575791 19576307 19576049.818 19575534 19576577 + gene protein_coding_gene FALSE TRUE AT2G47770.1 benzodiazepine receptor-related similar to peripheral-type benzodiazepine receptor [Solanum tuberosum] (GB:CAH10765.1); contains InterPro domain TspO/MBR-related protein; (InterPro:IPR004307) -0.330766027189967 -3.36052077214388 0.00645126361533736 1 3.18837753515038 3.82371695793951 -0.330766027189967 0.0921527381585616
AT3G56330_at 2.70112018949826 2.43645092227970 2.37830312661972 2.30793364278375 1.97174060067928 2.13392029389359 2.40621330502554 2.74532098911306 2.77712784606307 2.76377018015807 2.25386936302002 2.74210488570593 2.45301194868413 2.43941790503412 2.93821192974357 2.81846530806767 2.44023287210859 2.33867783036207 2.90202716774898 0.189904162222682 0.188019829875815 0.190667229074359 0.188019829875815 0.188019829875815 0.194522135210913 0.191561556529567 0.193830633262758 0.200415279739912 0.196924176641440 0.190438958585425 0.192952456034486 0.192921369687432 0.196002272305280 0.194982635815128 0.199920646990866 0.196066732509884 0.1884183792199 0.195447523319560 3 3 + 20902055 20902862 20902418.091 20901229 20902981 + gene protein_coding_gene FALSE TRUE AT3G56330.1 N2,N2-dimethylguanosine tRNA methyltransferase family protein similar to N2,N2-dimethylguanosine tRNA methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G15810.1); similar to tRNA (guanine-N(2)-)-methyltransferase [Crocosphaera watsonii WH 8501] (GB:ZP_00517904.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain N2,N2-dimethylguanosine tRNA methyltransferase; (InterPro:IPR002905) -0.317805664067165 -3.35980846509252 0.00645935923692622 1 3.18727102009226 5.06877908540202 -0.317805664067165 0.0804839938632638
AT4G32730_at 3.80491124545117 4.01929370132274 3.82871614593118 4.20031198069076 4.08489948848249 3.90178159975955 4.05677369317074 3.85039377716191 3.48589183572223 3.70139106091147 4.31298992221617 4.31585178069204 4.07824824452401 4.22795544470124 4.3186763183738 3.98907840795306 3.9824023374092 4.12560308821091 3.57509292753781 0.141126007126926 0.141220225030303 0.144969392734895 0.138925217374569 0.144834166204009 0.140554232493038 0.141736666548619 0.142109240200271 0.144862192944945 0.139137892748295 0.141346544994394 0.139153455264760 0.141598433434677 0.139101312118950 0.139331431616723 0.138953317262312 0.142603387695337 0.145290098863750 0.141056638651777 4 4|0 +|/ 15793711 15795573 15794482.8 15790350 15795859 + gene protein_coding_gene FALSE TRUE AT4G32730.1|AT4G32730.2 PC-MYB1 (myb domain protein 3R1); DNA binding / transcription factor Encodes a putative c-myb-like transcription factor with three MYB repeats. Identical to Myb-related protein 3R-1 (Plant c-MYB-like protein 1) (Protein PC- MYB1) (PC-MYB1) (MYB3R-1) [Arabidopsis Thaliana] (GB:Q9S7G7;GB:O65528;GB:Q9LDX5); similar to MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11510.2); similar to Myb [Nicotiana tabacum] (GB:BAB70511.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Myb-related protein 3R-1 (Plant c-MYB-like protein 1) (Protein PC- MYB1) (PC-MYB1) (MYB3R-1) [Arabidopsis Thaliana] (GB:Q9S7G7;GB:O65528;GB:Q9LDX5); similar to MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11510.1); similar to Myb [Nicotiana tabacum] (GB:BAB70511.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.32623814219612 3.35947618009254 0.00646313932658004 1 3.18675482781659 7.84653985452993 0.32623814219612 0.0882694372779866
AT4G29050_at 6.00450128350753 5.89888860481468 5.70102874013926 5.84791850182623 5.76688472404913 5.62565348679348 2.98313555149638 3.20701951124788 5.35256069775809 4.36630623166090 3.93756675859962 4.4197047287687 4.57073836228418 4.40641478712512 4.02036407407222 4.16875634242212 3.81892115080433 3.99664363792012 4.65094965252425 0.256369790573718 0.255914057033025 0.254395072810169 0.272139655355188 0.257849544474394 0.263975166393122 0.251094339126255 0.246298397198825 0.246831659845435 0.251552564598865 0.249890121577133 0.246087848454013 0.249091796064138 0.250448611321941 0.252658918927697 0.248215832996050 0.249126721696522 0.248264198790404 0.246087848454013 4 4 - 14314879 14315398 14315125.727 14314824 14316885 - gene protein_coding_gene FALSE TRUE AT4G29050.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70110.1); similar to ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT3G59700.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70130.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC57697.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.294717497518602 3.35908808780053 0.00646755714689458 1 3.18615193079321 9.60804259593297 0.294717497518602 0.0554857970917194
AT4G11730_at 0.826097406766671 1.20346676596664 0.963809726595105 1.07626334168050 1.18372879301014 1.09327307459844 1.25007266732239 0.798093923077066 1.69870686806166 1.74726365430786 0.711365287271832 0.666187654530206 0.91008237625201 1.11301811202336 0.703061357649153 1.03033347123380 0.957145166917514 0.988334637164868 1.46445883334078 0.221235838679716 0.230943818969854 0.222669213459548 0.232442342078066 0.219043546775497 0.229428942622660 0.233194520508719 0.223958408798526 0.219366210409372 0.223638809521173 0.230773562531660 0.225711600046266 0.221344588096676 0.230499467601526 0.227895179989195 0.219085548806142 0.241311586044008 0.218919174648093 0.223766696296794 4 4|0 +|/ 7070253 7070926 7070670.2 7067029 7070962 + gene protein_coding_gene FALSE TRUE AT4G11730.1 ATPase, plasma membrane-type, putative / proton pump, putative Identical to Putative ATPase, plasma membrane-like [Arabidopsis Thaliana] (GB:Q9T0E0); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to Plasma membrane ATPase 4 (Proton pump 4) (GB:Q03194); similar to plasma membrane H+-ATPase [Lycopersicon esculentum] (GB:AAB17186.1); contains InterPro domain ATPase, P-type cation exchange, alpha subunit; (InterPro:IPR006069); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014) -0.346016367084284 -3.35887992916654 0.00646992797783237 1 3.18582855415804 2.31022610893567 -0.346016367084284 0.104911736428062
AT1G78680_at 10.3088786561776 10.2845556738903 10.3256702562570 10.3136172920628 10.5759000755219 10.3704684101052 10.9970918247042 10.9103034880415 9.79059792087862 10.3237717986821 10.8633452456425 10.8369545734304 10.9033079136681 10.8796185709158 10.6599173510455 11.0267260998968 10.8427267627159 10.8914607968111 10.0878134776301 0.0989493619697154 0.0989493619697154 0.109198181507081 0.100560176372430 0.0989493619697154 0.101032795690745 0.100920910524004 0.101231325828599 0.110097095032974 0.104480606734002 0.101243593208427 0.101681907656898 0.100958132047896 0.109378279252627 0.102097215022665 0.102101878248613 0.106076572061363 0.101710618571748 0.102877701004576 1 1|0 +|/ 29599446 29600888 29600102 29598674 29601163 + gene protein_coding_gene FALSE TRUE AT1G78680.1 ATGGH2 (GAMMA-GLUTAMYL HYDROLASE 2); gamma-glutamyl hydrolase The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. Identical to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GGH) [Arabidopsis Thaliana] (GB:O65355;GB:Q8VYT0;GB:Q9ZV86); similar to ATGGH1, gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78660.2); similar to Gamma-glutamyl hydrolase precursor (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GB:P93164); similar to Os05g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056052.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.283409681492761 3.35831664936831 0.00647634793276126 1 3.18495347719235 20.9760114912598 0.283409681492761 0.0388781335293412
AT2G47750_at 0.55703801974475 0.86232181986564 0.821568322248595 0.712020618309583 0.69280128236441 0.201829217960963 0.819279071312129 0.584100209755833 0.945273300060098 0.634488983338488 1.85417668436637 1.98039284395906 1.15185114913214 1.49075189708515 2.08893686310274 1.52907329781437 1.03524353132042 1.45118813747996 0.730748884680727 0.233760925046732 0.228335094780547 0.233116441281209 0.236737645686693 0.240246751000261 0.232168236845162 0.230453451054532 0.226486746723691 0.231344706179385 0.226486746723691 0.239425995139791 0.239605590439455 0.228661260037952 0.238988343448044 0.239524326861632 0.23759300883141 0.228517456945626 0.239610843859692 0.247155040177932 2 2 - 19567377 19568011 19567732.818 19567197 19570261 - gene protein_coding_gene FALSE TRUE AT2G47750.1 auxin-responsive GH3 family protein Identical to Putative indole-3-acetic acid-amido synthetase GH3.9 (EC 6.3.2.-) (Auxin-responsive GH3-like protein 9) (AtGH3-9) (GH3.9) [Arabidopsis Thaliana] (GB:O82243); similar to DFL1 (DWARF IN LIGHT 1), indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT5G54510.1); similar to GH3.17, indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT1G28130.1); similar to GH3.5/WES1, indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT4G27260.1); similar to Probable indole-3-acetic acid-amido synthetase GH3.11 (Auxin-responsive GH3-like protein 11) (OsGH3-11) (GB:P0C0M3); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.351950745612028 3.35771320548592 0.00648323288421553 1 3.18401597810531 1.82780591514139 0.351950745612028 0.109662811496524
AT2G03340_at 7.8379614928174 8.05321884973341 7.43080592512772 7.5993065575438 8.57850502293271 8.28070431841542 7.74668243593428 7.56283863978006 5.70942232801572 6.70220277988034 6.43154653360545 6.16095860773514 6.53680030328073 7.14003255665489 6.12511417193634 6.85600834342305 7.09250625730251 6.64761846412194 6.09328946482842 0.214893695019339 0.213455658378697 0.213510838947876 0.211819666475927 0.219236859265389 0.215264646794803 0.223470101773573 0.221202461390092 0.231563714660125 0.21390867550926 0.221917391127508 0.213512231799342 0.211363517101771 0.213075591545937 0.226762684756923 0.213844263201187 0.242825742453578 0.220337845856334 0.217311771584487 2 0|2 /|- 1014745 1015162 1014907.4 1014347 1017012 - gene protein_coding_gene FALSE TRUE AT2G03340.1 WRKY3 (WRKY DNA-binding protein 3); transcription factor Encodes WRKY DNA-binding protein 3 (WRKY3). Identical to Probable WRKY transcription factor 3 (WRKY DNA-binding protein 3) (WRKY3) [Arabidopsis Thaliana] (GB:Q9ZQ70); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.1); similar to DNA binding protein WRKY2 [Vitis vinifera] (GB:AAT46067.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.313836699310655 3.35750709797149 0.00648558616817671 1 3.18369576726415 14.2823169114518 0.313836699310655 0.0768510790866508
AT1G65920_at 2.11212396603003 2.01645007443399 1.94798747546904 1.96161464794866 1.85962104497560 1.74339510142633 1.84987561529992 2.00845395262497 1.39428222411249 2.13608048459010 3.29778943277417 3.75130224814288 2.77603268264229 2.48869820883343 4.09391371023919 2.98438013356436 2.55687003280194 2.19511063348068 3.47155803711761 0.223396053418858 0.221163613790452 0.226491376058045 0.217479166852937 0.221881426153214 0.221661813301181 0.220219616111257 0.223095731618029 0.220073945843735 0.224410765927213 0.217265475347925 0.222978021697026 0.223903430995874 0.223759210222851 0.220988309287241 0.217265475347925 0.225588311414532 0.223551904924164 0.222580484277758 1 0|1 /|- 24529126 24529419 24529284 24528765 24532957 - gene protein_coding_gene FALSE TRUE AT1G65920.1 regulator of chromosome condensation (RCC1) family protein / zinc finger protein-related similar to zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G42140.1); similar to zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G19420.1); similar to Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G12350.1); similar to Pleckstrin-like; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE89832.1); similar to ZR1 protein [Medicago sativa] (GB:CAC84086.1); similar to putative ZR1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87854.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.282733609363743 3.35673688457187 0.0064943880058188 1 3.18249912812598 4.61343309340104 0.282733609363743 0.0379123046632846
AT2G25690_at 2.04286985245889 1.91215225290574 2.55674239823321 2.88441378190883 2.61778389178769 2.14105972431157 2.61453912035222 2.22280164945074 2.16762042636552 1.86409788909400 2.24865109064991 2.2449480053896 2.63503938975961 2.36452151235790 2.34171033440811 2.49995548061613 2.68487461622274 2.13402614781193 1.98896316405274 0.207238592671690 0.193835960817193 0.191682290440316 0.193556834663384 0.190954854241855 0.197263417064222 0.203462437364098 0.194715425096119 0.204029826184641 0.193567396697187 0.192082673271202 0.190954854241855 0.192557584615424 0.190954854241855 0.193388134013964 0.198146176062724 0.204879012707274 0.204963662177332 0.196296554268106 2 2 - 10947876 10948297 10948098.455 10947174 10949333 - gene protein_coding_gene FALSE TRUE AT2G25690.1|AT2G25690.2 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT5G11460.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE83632.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.369615612958166 3.35630495527859 0.00649932934832871 1 3.18182804394153 4.57460015825415 0.369615612958166 0.123000336122134
AT2G44490_at 11.6802837915317 11.9291196267864 12.0219039169866 11.9893336104804 12.1601538689785 12.1777613249279 11.649996699803 11.8184677535567 11.8978406586558 11.7771272563803 12.1891944052047 12.2603148283716 12.1331377338389 12.2363074870928 11.8079522788995 12.0753438472022 11.4901482832045 12.0962756373729 11.6344813970629 0.0753583427872614 0.069679457654071 0.0714001725697086 0.0719423498798914 0.0707043748723966 0.070590874665789 0.0740639838738292 0.0696031733641954 0.074271697076222 0.0720981049452648 0.0696031733641954 0.0696031733641954 0.0708090015520965 0.073532754358301 0.0711059739205128 0.0701592684955325 0.0803370617196456 0.07180998863202 0.0714161089969 2 2|0 +|/ 18373821 18374552 18374228.3 18371832 18374801 + gene protein_coding_gene FALSE TRUE AT2G44490.1 PEN2 (PENETRATION 2); hydrolase, hydrolyzing O-glycosyl compounds Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance. similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G60120.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.292044543852990 3.35543101400279 0.00650933914334615 1 3.18047016878402 23.8313279491388 0.292044543852990 0.0523966017170271
AT2G39410_at 2.61737409894918 2.37235142417478 1.90421454733107 2.03006566480784 2.16427579272146 2.04681417315797 2.34290645052337 2.25190890154353 2.27382486467367 2.5894269970837 2.21774234874026 1.66749440961967 2.11323483370729 2.29377044304615 2.34520226533262 2.29515729773235 2.17074027723862 2.32108874063248 2.35132311703615 0.23700236352857 0.233107943866531 0.238576067311723 0.241661458566815 0.24346011139694 0.231287804119631 0.230992502552937 0.236516183504929 0.240324499383652 0.241460562230085 0.241709615869903 0.245235309266535 0.236419171694092 0.243329441171127 0.241732236036322 0.234066437418712 0.236180221354604 0.230992502552937 0.249921962963331 2 2|0 +|/ 16463698 16465192 16464589.5 16462647 16465295 + gene protein_coding_gene FALSE TRUE AT2G39410.1|AT2G39410.2 hydrolase, alpha/beta fold family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G39420.1); similar to Os12g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066522.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains domain no description (G3D.3.40.50.1820); contains domain PHOSPHOLIPASE-RELATED (PTHR11614); contains domain LYSOPHOSPHOLIPASE-RELATED (PTHR11614:SF18); contains domain alpha/beta-Hydrolases (SSF53474)|similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G39420.1); similar to Os12g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066522.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.293298586775727 -3.35456661153131 0.00651925519160918 1 3.17912705997309 4.50769495828649 -0.293298586775727 0.0541615208417333
AT1G04800_at 7.12624280079565 7.09989420499787 5.46803264424016 5.02501542582519 4.80771907848073 5.13730895449404 5.19860528970636 5.27941836403168 6.57240621359754 5.48298025454747 6.53332900224011 7.8256747690188 5.79340446004503 5.97529474857745 7.09395794286403 6.11184231452256 6.10255543915598 6.54510080148808 6.25072310437621 0.315471619289408 0.321997888274975 0.308900436646028 0.310538789030809 0.301949969017644 0.318505801580969 0.294990180213258 0.306147854478264 0.29520629140879 0.296953393925762 0.294990180213258 0.313345885269830 0.297788682492422 0.297954968816779 0.302076429938518 0.294990180213258 0.308113052441749 0.297523467474472 0.294990180213258 1 1 - 1348634 1349209 1349048.364 1348451 1349285 - gene protein_coding_gene FALSE TRUE AT1G04800.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to glycine-rich protein [Brassica oleracea var. alboglabra] (GB:CAA99171.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952) -0.335456364278797 -3.35418654015236 0.00652362009222536 1 3.17853648783978 11.9426203247778 -0.335456364278797 0.0966814673315679
AT3G26860_at 1.63928224161866 2.07862458025037 1.80386786654364 1.45284409442308 1.62071453807021 1.58593828755405 2.38869068505034 2.20210026758214 2.82452697497368 1.84514393665275 1.75062875250574 2.17772650296333 1.88814856247534 2.65187862742746 1.88258677540476 2.29417532695353 2.28043467621382 2.19241498785921 2.42178760990787 0.214517538984884 0.214517538984884 0.223490952464834 0.218522164887652 0.219244837844850 0.223763793232237 0.218420567296055 0.217390597010621 0.227827326937671 0.214857352298376 0.215235058085008 0.227699067574194 0.229302256906328 0.223521700284624 0.226880752849275 0.214517538984884 0.214517538984884 0.214517538984884 0.214517538984884 3 3 - 9902806 9903092 9902975.571 9902753 9903121 - gene protein_coding_gene FALSE TRUE AT3G26860.1 similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G27680.1); similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G26870.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) -0.342701738840167 -3.35334534381023 0.00653329137599577 1 3.17722936172149 4.09829221196331 -0.342701738840167 0.102711223318312
AT2G37450_at 8.60880898271065 8.67449478001102 7.89193208844112 7.93812336937727 8.99784716740879 8.34496194441963 9.18348913444466 9.12300906057825 8.79313403158974 9.32544050443805 9.06247774677442 9.62073003424472 9.23683304214998 9.19095254866489 9.29736115431322 9.09324962882701 8.63917151821688 8.69144576248813 9.52568071038267 0.158257793383522 0.151002399538149 0.168891984719697 0.174251322750191 0.149195525979063 0.166450566923028 0.150048272987006 0.148795392269117 0.160752863927405 0.150016567114533 0.159736335981638 0.155201391900748 0.158110814187363 0.160499348131858 0.155118456740535 0.157956618387905 0.160120237482144 0.160204716369062 0.153369127584648 2 2|0 -|/ 15729981 15730736 15730413.8 15729647 15732141 - gene protein_coding_gene FALSE TRUE AT2G37450.1|AT2G37450.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G37460.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE82104.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.357479208184013 -3.35249989255590 0.00654302635048462 1 3.17591557249002 17.7547230300556 -0.357479208184013 0.114316354950731
AT3G47980_at 1.19758074683673 1.27475139134986 1.72149620814061 1.49762133961639 1.61859121934229 1.55804816297782 1.60320437328348 1.53844419731883 1.35736403877326 1.36976220123131 1.57524727999307 1.73229470266527 1.91159668807061 1.53165921992076 1.8039677214682 1.75544676209750 1.77450563059585 1.92162069736516 1.39676697443023 0.143757500410961 0.140554182020115 0.140357865774399 0.143248080676467 0.141517472100670 0.143457656243786 0.145879979354628 0.139208355818461 0.142455998615534 0.146013562670115 0.140094752941567 0.140384898639197 0.141573525076470 0.140736293973795 0.141448931652498 0.137941960898013 0.138482644757116 0.137693235818631 0.141225658562226 3 3|0 +|/ 17721462 17722848 17722049.474 17721359 17723851 + gene protein_coding_gene FALSE TRUE AT3G47980.1 integral membrane HPP family protein similar to integral membrane HPP family protein [Arabidopsis thaliana] (TAIR:AT5G62720.1); similar to Os03g0684700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050921.1); similar to hypothetical protein [Oryza sativa] (GB:AAK14421.1); contains InterPro domain HPP; (InterPro:IPR007065) 0.285802660807922 3.35197126555145 0.00654912077696988 1 3.17509408622917 3.06392890948341 0.285802660807922 0.0437573798167677
AT3G54300_at 8.41641428730994 8.59663614750657 8.6841718176678 8.67861099296911 9.05157766779005 8.62880940663179 8.39298909569326 8.37539464307176 8.09019871412334 7.93913330526467 8.36988110026386 8.11778912457367 8.16584334810637 8.3115560433064 8.01478638101388 8.20223534484403 8.40170721048096 8.23277527403884 7.70176365273223 0.191708657940823 0.180109523159663 0.175479825624621 0.182436367671928 0.183539923877558 0.189215194082842 0.175932850561363 0.180250097497988 0.190890717394129 0.189410733539481 0.185853308204390 0.177450275908102 0.183336604128910 0.183314757134667 0.185262104080671 0.182560512532653 0.197321844618728 0.177949462695802 0.188834383067316 3 3|0 -|/ 20119358 20120947 20120187.778 20119187 20121661 - gene protein_coding_gene FALSE TRUE AT3G54300.1|AT3G54300.2 ATVAMP727 (Arabidopsis thaliana vesicle-associated membrane protein 727) member of Synaptobrevin -like protein family Identical to Vesicle-associated membrane protein 727 (AtVAMP727) (VAMP727) [Arabidopsis Thaliana] (GB:Q9M376;GB:Q53XE0); similar to ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) [Arabidopsis thaliana] (TAIR:AT2G32670.1); similar to Os08g0558600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062495.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); similar to Os07g0194000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059109.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.316070216078865 3.35125789248746 0.00655735430283684 1 3.1739854727553 16.6717939835143 0.316070216078865 0.0795963809816405
AT1G24290_at 3.32682092212310 3.42823419558566 2.46932691767461 3.13182255619136 2.84562004161256 3.00678991100218 3.23407871849765 3.7219135352617 3.53292889706568 3.78550906727718 3.26488915386136 3.54366540340295 3.40033672729198 3.66499448464863 3.66757188069842 3.58639373345568 2.8814839975111 3.46907986982783 3.7069263995221 0.184355925287843 0.185268738760789 0.190772241921788 0.190036333124351 0.190522666847995 0.194959750152529 0.187925327656966 0.189961271951143 0.187863415160958 0.185835546523997 0.189804290981234 0.190318891764920 0.180344854651018 0.183589443421819 0.194721097101764 0.18061946726674 0.213448083965109 0.180344854651018 0.1832901728672 1 1 - 8612696 8613206 8612899.273 8612494 8614266 - gene protein_coding_gene FALSE TRUE AT1G24290.1 AAA-type ATPase family protein similar to replication factor C 36 kDA, putative [Arabidopsis thaliana] (TAIR:AT1G77470.1); similar to hypothetical protein LOC405856 [Danio rerio] (GB:NP_998085.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.402345767265629 -3.35088294653558 0.00656168605240652 1 3.17340277540468 6.70053753022305 -0.402345767265629 0.146140914364048
AT2G04690_at 9.42696822440656 9.78924592652743 9.61733111907351 9.69333622881858 10.2574357606362 9.99567851952535 9.06697237458942 8.85903605075758 9.1193155761798 8.70675905020421 8.70321417260334 8.8869032989577 9.23170952843683 8.83502873637209 8.7163402880034 9.13625015378996 9.10713142642027 9.15378116116278 8.96476953344995 0.133576095172620 0.127903034110085 0.132772041658802 0.131688360599073 0.127778063198516 0.137634161985520 0.131248759920110 0.128356199904455 0.132571296999873 0.132383695997366 0.139709165277222 0.124966625850610 0.124966625850610 0.132922767456394 0.139710199297636 0.124966625850610 0.146778347122552 0.130418233586233 0.130544610071052 2 2|0 +|/ 1644628 1645632 1645009.625 1644494 1646348 + gene protein_coding_gene FALSE TRUE AT2G04690.1|AT2G04690.2 cellular repressor of E1A-stimulated genes (CREG) family similar to Os06g0238300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057255.1); similar to PREDICTED: similar to cellular repressor of E1A-stimulated genes [Apis mellifera] (GB:XP_624302.1); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.323201611025065 3.35056136099779 0.00656540365987767 1 3.17290299655693 18.5390386417066 0.323201611025065 0.0863153013566912
AT3G20050_at 8.3432601935382 8.33141339863861 7.9011056233721 7.63104478309943 7.91968730513278 7.84831246851235 8.7253301339484 8.7072901854679 7.23814266944501 7.49610301368344 7.53841766226217 7.97919084469928 7.49115285253071 7.08897294647363 7.91832630563108 7.26164483336607 7.45495348657267 7.31228775307676 7.41004366555642 0.187849545895488 0.191151304362448 0.201820622586366 0.198166598000970 0.193029120144318 0.189444462987184 0.189376153923848 0.194633933688207 0.196311009894376 0.197034778157416 0.200170382358424 0.189565004860003 0.199544629140818 0.190060248258669 0.196260697965366 0.191917272434399 0.202877807775842 0.196451695542686 0.194157046905328 3 0|3 /|- 6998600 6999338 6998973.556 6998244 7002410 - gene protein_coding_gene FALSE TRUE AT3G20050.1 ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein 1 subunit alpha (TCP-1-alpha) (CCT-alpha) (CCT1) [Arabidopsis Thaliana] (GB:P28769;GB:Q9LJZ6); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to Tcp1 protein [Danio rerio] (GB:AAH44397.1); similar to t-complex polypeptide 1 [Bruguiera sexangula] (GB:BAC22124.1); similar to T-complex protein 1, alpha subunit [Medicago truncatula] (GB:ABE87447.1); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, alpha subunit; (InterPro:IPR012715) -0.288798690093759 -3.35037921713422 0.00656751024264934 1 3.17261992192167 15.6194545706995 -0.288798690093759 0.0484840401946844
AT4G29020_at 7.1478620465953 7.02466164862308 4.67247737050658 4.78558498794049 4.67853608832212 5.19694247773925 4.61381319920652 4.97146550978329 5.90323383498358 5.47049197621735 6.01819603115315 7.19945373845109 5.31805967190101 5.27004152288435 6.8867152473838 6.01802159641942 5.22970651707735 5.60012902542632 5.26663208256352 0.279050537615976 0.274593321878733 0.236016212640785 0.242317650741609 0.241671703089425 0.233418620749254 0.242959286458655 0.242812171164532 0.243541337555754 0.246917647401137 0.236101908215219 0.254144102930840 0.237233621073764 0.235569609744469 0.244083583211456 0.235558107121253 0.240883685462013 0.241513779784008 0.239395923622561 4 4 + 14305041 14305490 14305248.909 14304927 14305727 + gene protein_coding_gene FALSE TRUE AT4G29020.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G04660.1); similar to unnamed protein product [Triticum tur (GB:CAJ13547.1) -0.355155457838011 -3.34978967482613 0.00657433332667904 1 3.17170368219119 11.1310811078022 -0.355155457838011 0.112768988109890
AT1G55570_at 0.820176404289527 0.821055534984536 1.03453465593113 0.755983762485608 0.844912890892588 0.484781814515775 1.00145411415529 1.18844745383005 1.78904919355608 1.12161285652993 0.769082198791343 0.885980070141136 0.723211537671527 1.01202102463379 0.520289677802526 0.952922956417864 1.08635346558387 0.90505247905922 1.05762691855825 0.202726419832808 0.207470082853116 0.21101238393936 0.207647315861986 0.206789438089607 0.20287564735756 0.206189652942951 0.209997885800995 0.2229678768755 0.208960297132546 0.204932444963811 0.202016734831759 0.226694153890095 0.202598670155183 0.207690742574549 0.207137808651124 0.21665243419363 0.21027159863004 0.208121478203538 1 1|0 +|/ 20762788 20763362 20763019.8 20761434 20763742 + gene protein_coding_gene FALSE TRUE AT1G55570.1 SKS12 (SKU5 Similar 12); copper ion binding / oxidoreductase similar to SKS14 (SKU5 Similar 14), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G55560.1); similar to SKS13 (SKU5 Similar 13), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G13400.1); similar to SKS11 (SKU5 Similar 11), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G13390.1); similar to L-ascorbate oxidase homolog precursor (Ascorbase) (GB:Q00624); similar to Bplo [Brassica napus] (GB:CAA47177.1); similar to Bplo [Brassica napus] (GB:CAA47178.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.321814454572001 -3.34913184532669 0.00658195528963636 1 3.17068128423968 1.95873191179093 -0.321814454572001 0.0851759997006026
AT4G00990_at 6.27064365919086 6.21178088061152 5.9382061151043 5.94450902509018 6.55230428102678 6.41494759827231 6.50589200116916 6.23564660075635 5.6997488161836 6.36783695701999 5.8800294909715 5.96412475547381 5.72305632675759 5.20816816001914 5.71705260759868 5.92479453852635 5.19735407796651 5.64261123404416 6.37702407094954 0.172544098014235 0.177116496620673 0.171190508967598 0.173539017062703 0.174889037890269 0.185338218399885 0.171912870857673 0.176164676074859 0.185099309266427 0.173722811238422 0.175027079381029 0.177269682788279 0.181054137085516 0.188250661313830 0.178944527839483 0.173282295787722 0.183347016075963 0.176554525212414 0.173384157038712 4 4|0 +|/ 430492 431503 430961 426944 431821 + gene protein_coding_gene FALSE TRUE AT4G00990.1 transcription factor jumonji (jmjC) domain-containing protein similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to chloroplast DNA-binding protein PD3 [Pisum sativum] (GB:CAA67296.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96755.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96756.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347) -0.292276706511617 -3.34903023300871 0.00658313342929796 1 3.17052335571542 12.1619173603047 -0.292276706511617 0.0534523216130457
AT3G02555_at 4.19053432336084 4.04078179371834 4.19466298674609 4.50629131444374 4.91310308889713 4.97252458421496 4.09606912766664 4.29615069071096 3.93789485677091 3.85983798684888 4.11089605534456 3.86933799268681 4.28284168956709 3.55051987538042 3.875918741117 4.33667617681066 4.14719521605432 4.17929504846542 3.96940102568639 0.236652194604899 0.236563371320716 0.231601078544899 0.235063696086921 0.235296700243263 0.241222310699414 0.236122926242193 0.2372968227398 0.235055109953350 0.243172064533662 0.244138922265538 0.235911235506888 0.23714525009361 0.242398158194556 0.242406072451883 0.230761836257882 0.246248083490219 0.239903738040226 0.240899513137891 3 3|0 -|/ 540036 540917 540446.1 539646 541510 - gene protein_coding_gene FALSE TRUE AT3G02555.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16110.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96883.1) 0.306234326352089 3.34893384453345 0.00658425120058632 1 3.17037354554179 8.38449626665168 0.306234326352089 0.0698895739579532
AT1G21560_at 6.19627098640945 6.39187841277709 5.53277862591885 5.19750416350239 6.97323014247765 6.47625770872262 7.24724504773028 6.99686845224233 6.11718453799193 6.53388579763948 6.27958495567279 6.72517535166277 6.1016534247842 5.69645108121016 6.67332460739557 6.4341898878969 6.76809201058629 6.2763575365921 6.63436744564506 0.206628397511954 0.202117412399193 0.206966471515626 0.205740904582754 0.202160312914196 0.203018069138695 0.203377679651487 0.198721006329523 0.202783633759494 0.200239001636907 0.203724287655262 0.20289741825601 0.209849057540453 0.216942965653014 0.212086950221707 0.198572513595095 0.208230724824241 0.203021113317977 0.201871240604935 1 1 + 7555904 7556736 7556330.273 7554829 7557014 + gene protein_coding_gene FALSE TRUE AT1G21560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01170.1); similar to Os04g0539100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053436.1); similar to Os05g0423200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055589.1); similar to Os04g0221000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052267.1) -0.361124359042402 -3.34804545373639 0.00659456258557074 1 3.16899274776159 12.7754206261729 -0.361124359042402 0.117414913825179
AT3G16740_at 4.80528093440106 5.13464280297471 4.73174170315388 5.26389267787287 6.2204554598586 5.08038637732862 4.62121377276482 4.43307949842025 4.51225566325768 4.07418856163965 4.93531210401349 4.6251200854698 4.77381551314784 5.01835016129756 4.50479639795067 4.51544953444125 4.64370820912628 4.54747290506792 4.01610657075775 0.216161829919403 0.21402942150176 0.216739588611824 0.220069421758682 0.224972803604931 0.227728349280894 0.220221528266695 0.219224952576162 0.220470611716926 0.217391734697990 0.221484581000079 0.226927124583554 0.220414950401008 0.218395169349444 0.219629124835797 0.21402942150176 0.219675621426720 0.221328272742536 0.215017735339701 3 3 + 5700058 5700605 5700259.364 5699339 5700832 + gene protein_coding_gene FALSE TRUE AT3G16740.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G18780.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE85493.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.535108825504636 3.34594507552903 0.00661900698279457 1 3.16572797237644 9.4845133428632 0.535108825504636 0.227408309491035
AT3G17040_at 9.39744084829407 9.5153261735476 8.89017060684279 9.2621094947451 9.81743433059747 9.49455456248313 10.3267674511336 10.1873977102594 10.0711907729833 10.4369756671981 10.2988480420143 10.4129894066039 10.0933876567463 10.0132696368991 10.1462927633654 10.4064176470068 9.93823551615105 10.0646646200214 10.5022539622605 0.115007726311778 0.113228813453452 0.121870721074997 0.120327391597562 0.113566825083578 0.117324157313291 0.113889059436798 0.113500114134893 0.123807568621039 0.110570123112769 0.110570123112769 0.111245374855629 0.114755612291288 0.120248592684936 0.111930176941078 0.111261050956417 0.127952945946746 0.114883989451939 0.110570123112769 3 3|0 -|/ 5809456 5810184 5809725.3 5809272 5812683 - gene protein_coding_gene FALSE TRUE AT3G17040.1 HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. similar to STA1 (STABILIZED1), RNA splicing factor, transesterification mechanism [Arabidopsis thaliana] (TAIR:AT4G03430.1); similar to Os03g0308800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049907.1); similar to TPR Domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95554.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.327854718427225 -3.34552067129652 0.00662395747669427 1 3.16506825093266 19.8656851281954 -0.327854718427225 0.0909007828092735
AT1G50700_at 4.6546198836148 4.53157524048312 4.74490390907918 4.90113283395446 4.44053936724474 4.7603535418804 3.85376814893005 3.85247143774260 3.68076537306609 4.18832249953362 4.35687599101948 4.21971177149149 4.16799415320101 4.12886444296788 4.00985269206474 4.17696960236498 3.77893668842679 4.25090132881387 4.19633822257919 0.199101281527396 0.203600164034803 0.199122893697039 0.202481362100155 0.202717713167548 0.202664503846313 0.202681596279496 0.206817547401402 0.220842261347975 0.203648120313745 0.203686769530039 0.203054220383832 0.203571416212226 0.207246550476981 0.203689472224808 0.204219181208156 0.205877809579710 0.199808267302695 0.199598837044461 1 0|1 /|+ 18787151 18787992 18787573.75 18785582 18788245 + gene protein_coding_gene FALSE TRUE AT1G50700.1 CPK33 (calcium-dependent protein kinase 33); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G20410.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to protein kinase [Medicago sativa] (GB:CAA65500.1); similar to calmodulin-like domain protein kinase isoenzyme gamma [Glycine max] (GB:AAB80693.1); similar to putative calcium dependent protein kinase [Trifolium pratense] (GB:BAE71239.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.301539185373933 3.34475790237947 0.00663286436581037 1 3.16388252136006 8.54645656145954 0.301539185373933 0.065173004194488
AT2G24820_at 10.1455629697171 10.2761252121461 10.1596348590859 10.2239928774167 10.3696512048792 10.1236659627997 10.7806844922243 10.8846469222277 10.5173245995393 10.8333474163476 10.3144874008425 9.99616477482555 10.4040314967015 10.4802246425991 9.93776785976578 10.5886155949938 10.4136111226419 10.5495730320816 10.4951384167607 0.0926371432352161 0.0862843294139404 0.0944894780688684 0.0884833884731375 0.0870937503899418 0.0919564164626725 0.0933775764562892 0.0891901145774997 0.0950010827151891 0.0862843294139404 0.0905021917648966 0.0865567659785319 0.0865617782459333 0.0887408092419138 0.0954932409508899 0.0868259646776117 0.100243728588628 0.0862843294139404 0.0862843294139404 2 2 + 10583324 10583831 10583613.909 10582058 10584017 + gene protein_coding_gene FALSE TRUE AT2G24820.1 TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); oxidoreductase similar to ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) [Arabidopsis thaliana] (TAIR:AT3G44880.1); similar to Rieske iron-sulfur protein Tic55 [Pisum sativum] (GB:CAA04157.1); similar to Os02g0792800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048363.1); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.291114663346434 -3.34272505430836 0.00665666186625306 1 3.16072224371847 20.8459103799483 -0.291114663346434 0.0526340517802671
AT4G37880_at 9.1005451288525 9.20546895526559 9.26787171466232 9.26743330799226 9.58067752310173 9.50236557034356 9.1242362722034 9.05564648586752 8.55949247212897 8.49135421013423 8.85326768065355 8.78172838032958 8.98125667457996 9.00969925564182 8.73609905917579 9.04474899550575 8.8788707273643 8.70615140872403 8.76580469504231 0.139265560847814 0.139179994520353 0.141690959597808 0.138853864584961 0.137038784402414 0.139655049145683 0.137753459726389 0.138584459881015 0.154065621513682 0.163367877280761 0.147613489069944 0.137038784402414 0.141718453805395 0.141229300198582 0.152752976209114 0.137038784402414 0.144782655375553 0.145139187869055 0.152691723600140 4 4 + 17810822 17811266 17811018.364 17809675 17811578 + gene protein_coding_gene FALSE TRUE AT4G37880.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G22690.2); similar to Zinc finger, RING-type; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE86823.1); similar to Os06g0588900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057959.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.275770066061356 3.34258002878428 0.00665836293642425 1 3.16049677502094 18.0027947357105 0.275770066061356 0.0255784641606349
AT3G63060_at 0.391844372793899 0.0555806045231717 1.35012427210808 0.825876777919514 0.654080286308548 0.547474020833627 0.87975783429444 0.739591054305636 -0.0770149390001324 -0.191873637153543 0.340029486460611 -0.00311411730286013 0.109705684292503 0.0957266884554512 0.830818282806883 0.274499924680168 0.794649870832128 0.0148773889111356 0.0532688335583081 0.223949416728665 0.219716116916283 0.221895881792513 0.220327423009219 0.221299305929908 0.228341671989725 0.219475432134946 0.220706477345058 0.219680718580918 0.22230723326328 0.218641034215822 0.217301555918962 0.231986822330338 0.219763333465686 0.218276897269537 0.219362475120348 0.222923475543737 0.217033820337437 0.221249982945108 3 3 - 23311692 23312154 23311993.909 23311265 23312448 - gene protein_coding_gene FALSE TRUE AT3G63060.1 circadian clock coupling factor, putative similar to circadian clock coupling factor-related [Arabidopsis thaliana] (TAIR:AT5G15440.1); similar to circadian clock coupling factor ZGT [Nicotiana tabacum] (GB:AAK56924.1) 0.353358885743474 3.34220563733515 0.00666275639787362 1 3.15991470819106 0.798179104690972 0.353358885743474 0.112008002402613
AT3G01440_at 5.74527960131764 6.55127053881199 4.76875117521066 5.10119266161482 5.34844801350937 5.13357967656152 7.13030030203368 7.50832665367268 4.67629857828894 6.21755374811889 5.89423589367452 6.73013503135044 6.57634218326552 5.95015166940858 6.77803767444388 6.90970337360821 5.86686351238269 5.79958587598177 5.72366545436271 0.235845266087201 0.238217456430447 0.237768534242507 0.240088428791598 0.244214257395847 0.246193494144118 0.232275140512002 0.242384640015255 0.260364454076164 0.240434799287079 0.233362409906053 0.231346351803521 0.231346351803521 0.245300013457248 0.240956829694689 0.237401342303067 0.247270489903987 0.235634904599476 0.233398609362371 3 3|0 +|/ 168565 169141 168861 168442 169625 + gene protein_coding_gene FALSE TRUE AT3G01440.1 oxygen evolving enhancer 3 (PsbQ) family protein similar to PSBQ/PSBQ-1/PSBQA, calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G21280.2); similar to Os07g0105600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058698.1); similar to photosystem II oxygen-evolving complex protein 3 [Lycopersicon esculentum] (GB:AAU03361.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) -0.435921042030318 -3.34178204122173 0.00666773084596361 1 3.15925613089785 11.8370458255189 -0.435921042030318 0.168602768847135
AT4G13170_at 8.55340877087603 8.73627860451387 8.06734724973817 8.4277976465367 8.38343301809529 8.37413583788329 8.94828870045703 9.16442556235572 8.04322306771922 8.46657141551513 7.69557234906946 8.50068555923997 8.26433878496253 7.78410687249338 9.2429822734557 7.88955455041919 8.08837241671923 7.92117560196914 8.28699021594018 0.163154256652615 0.165022431799789 0.169601479469808 0.164228225444286 0.173163538011507 0.168829777178563 0.173755065212253 0.167287575485110 0.163767201422252 0.159617876936874 0.169322999343295 0.159446139007594 0.161068068932376 0.167868492600519 0.165025670356702 0.160373446378788 0.183463383695598 0.161720440486133 0.167685283305924 4 4|0 -|/ 7655129 7656464 7655702.8 7654940 7656590 - gene protein_coding_gene FALSE TRUE AT4G13170.1 60S ribosomal protein L13A (RPL13aC) Identical to 60S ribosomal protein L13a-3 (RPL13AC) [Arabidopsis Thaliana] (GB:Q9SVR0); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) -0.314834160085534 -3.34101886719617 0.00667670266700272 1 3.15806956998579 16.8013611491900 -0.314834160085534 0.0793352200226454
AT4G13700_at 2.22722478183035 2.99780993568413 2.48509018793251 3.06287123542072 1.74350079712722 1.99575420800110 2.11268441744164 3.04295092014317 2.44787351341004 2.73702578912175 1.56059608662979 1.94259559452009 2.00476728812125 1.87368996536483 1.74914706339035 1.68088103566707 1.79007664873034 2.45424534582598 2.9343987482453 0.215708111091882 0.223897446274782 0.221803974492897 0.220341974024969 0.221837857789963 0.222840757690263 0.218541188036969 0.214106495646191 0.222109396523154 0.219369865222112 0.220092501478291 0.214872119362209 0.222160340612936 0.215990654881408 0.230486227819829 0.214106495646191 0.215733976991759 0.220701233361804 0.220268236143331 4 4 - 7957103 7957735 7957389.1 7957068 7958915 - gene protein_coding_gene FALSE TRUE AT4G13700.1 ATPAP23/PAP23 (purple acid phosphatase 23); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP15/PAP15 (purple acid phosphatase 15), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G07130.1); similar to Os08g0280100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061440.1); similar to Metallophosphoesterase; Purple acid phosphatase, N-terminal [Medicago truncatula] (GB:ABE79140.1); contains InterPro domain Purple acid phosphatase, N-terminal; (InterPro:IPR008963); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.548898105857795 -3.34009827359626 0.0066875415216249 1 3.15663820318229 4.75270209150939 -0.548898105857795 0.235803091552463
AT1G19630_at 1.45326073191965 1.77036467207194 2.24458847302973 2.48651254187349 2.000394752338 1.86585083728129 1.78621537495543 1.97885213206795 1.28919240060385 1.40627958578062 1.98591162253790 1.73111210525033 1.70175658904375 1.56595603871961 0.874761113588905 1.80820727001944 2.16497350538119 1.61202843958245 1.65980330856282 0.202741232180794 0.194895392215954 0.197184616369236 0.199103730367535 0.195640347869185 0.193892977258513 0.192096981235405 0.19665241075294 0.192562583614580 0.204945623375807 0.195527652954478 0.193745188733236 0.198779860587005 0.198241845778257 0.194607203883875 0.199557871943760 0.192783350115751 0.196422144431535 0.194515489769465 1 1|0 -|/ 6785827 6786776 6786353.2 6785579 6787958 - gene protein_coding_gene FALSE TRUE AT1G19630.1 CYP722A1 (cytochrome P450, family 722, subfamily A, polypeptide 1); oxygen binding member of CYP722A similar to CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G19230.2); similar to cytochrome P450 [Vigna radiata] (GB:AAF89209.1); similar to Os05g0101600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054381.1); similar to abscisic acid 8'-hydroxylase [Phaseolus vulgaris] (GB:ABC86558.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.315496663621617 3.33951943843596 0.00669436579846393 1 3.15573818228879 3.51442832302446 0.315496663621617 0.0801101327857312
AT2G36320_at 10.6283500087016 10.7683934812461 10.9208628296030 10.8919717622683 11.4604490600652 10.8371936171296 10.6775961798259 10.6267528073187 10.0803880877601 10.3520881486570 10.8484485046966 10.5961983489433 10.7163025464763 10.7117944226331 10.2862749011653 10.8114937142945 10.5496888564853 10.1083273158511 10.2510507240477 0.087437052464888 0.0883773412168344 0.0942777081970161 0.0906868729338346 0.0887796841706612 0.093904096415009 0.0878227230859507 0.0894127810634002 0.0968310680492626 0.0911086695229443 0.0962931380805208 0.087437052464888 0.0900851294686935 0.0948524774065976 0.10005571288007 0.087437052464888 0.099756178475275 0.0971308453711934 0.0930090823823814 2 2 + 15236473 15236919 15236687.455 15235867 15237575 + gene protein_coding_gene FALSE TRUE AT2G36320.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (AtSAP4) (SAP4) [Arabidopsis Thaliana] (GB:Q9SJM6;GB:Q0IGN9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT3G52800.1); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.351534977078365 3.33720552403292 0.00672171725610782 1 3.15214008207862 21.2546504165063 0.351534977078365 0.111008768563010
AT1G19240_at 6.79496504011453 6.80582839513105 6.11988436200954 5.94334526534233 5.95576073299974 6.14420234661869 5.69148101807763 5.94577499124464 5.89056844459801 5.15217908368709 4.95249222402341 5.06308698092221 5.12643548092733 5.2752173090898 5.12432136395327 5.06861941291856 5.1920615933108 5.32411286267621 5.36574442685822 0.214500231280561 0.205128941564523 0.203456920561366 0.207761928330082 0.199256697506444 0.204063324313151 0.211830717044656 0.201805724409484 0.199256697506444 0.202904599514326 0.202018324782892 0.201744898055044 0.206581157163824 0.202327947209192 0.201855333916269 0.199256697506444 0.200508061079029 0.199256697506444 0.199256697506444 1 1|0 -|/ 6649572 6650285 6649923.1 6649234 6650411 - gene protein_coding_gene FALSE TRUE AT1G19240.1 similar to Os01g0144700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042006.1) -0.298709049651398 -3.33688535852717 0.00672551073291838 1 3.15164220034540 11.4803006298717 -0.298709049651398 0.0627450801973807
AT1G08810_at 5.71628484653685 5.90328247580557 4.13846182152544 4.15819870211585 5.81714500459312 5.50791708397846 4.79630212555773 5.1972614154097 4.40164061239072 4.82529252876995 4.64764304180758 5.72958261748027 4.60955235308223 4.5630962511075 4.49468379344812 5.28492932025965 4.40937283795171 4.48632179936257 5.59300652543243 0.270510697562737 0.271424610818123 0.266778736745608 0.282765301848444 0.268127143230184 0.281206197987906 0.268217210518441 0.271056555840333 0.276120113097997 0.265570149763195 0.265570149763195 0.269145918354700 0.267101597368528 0.283753969782166 0.267970130271626 0.278219864728831 0.272456304429225 0.267812592129967 0.272122830531287 1 1|0 -|/ 2819294 2819824 2819575.8 2819068 2820398 - gene protein_coding_gene FALSE TRUE AT1G08810.1|AT1G08810.2 MYB60 (myb domain protein 60); DNA binding / transcription factor|MYB60 (myb domain protein 60); DNA binding putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. similar to MYB30 (myb domain protein 30), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G28910.1); similar to MYB transcription factor [Cucumis sativus] (GB:ABC33923.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to AtMYB31/AtY13 (myb domain protein 31), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74650.1); similar to MYB transcription factor [Cucumis sativus] (GB:ABC33923.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.329842099913077 -3.33565734487811 0.00674008113591369 1 3.14973247944125 10.0134205047788 -0.329842099913077 0.093473217021851
AT1G25280_at 7.96321092566662 8.64450616642269 8.7356015822077 8.82715659554295 8.71770822657002 8.55728367767896 8.20076517323565 7.86520278298214 7.60252095711977 7.8205739721449 8.01945900873253 8.0755200110115 7.70957253186006 7.64816030049699 7.55866199381151 8.46542121632775 8.0907290053104 7.91233804775863 7.69919381512019 0.173657833584065 0.164273900654703 0.173429702146823 0.165961707317713 0.166286858001455 0.165868552209324 0.165289002593426 0.165656870973747 0.180549596306677 0.171063525328652 0.162386466453185 0.165897656957212 0.168135168951914 0.165615797986224 0.16881641037734 0.162819659115540 0.175957132460404 0.177712484247890 0.172400056774416 1 1 + 8866047 8866535 8866306.545 8863764 8866792 + gene protein_coding_gene FALSE TRUE AT1G25280.1|AT1G25280.2 AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP1 (TUBBY LIKE PROTEIN 1), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G76900.2); similar to Os05g0437900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055656.1); similar to Os08g0103300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060771.1); similar to CAA303719.1 protein [Oryza sativa] (GB:CAB53492.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007)|similar to AtTLP1 (TUBBY LIKE PROTEIN 1), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G76900.2); similar to Os12g0163400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066230.1); similar to Os05g0437900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055656.1); similar to CAA303719.1 protein [Oryza sativa] (GB:CAB53492.1); contains InterPro domain Tubby; (InterPro:IPR000007) 0.384284720687587 3.333250396289 0.00676873326127087 1 3.14598905763043 16.260135564226 0.384284720687587 0.135257877837878
AT4G28580_at 2.79107208017449 2.76629528136906 2.76486277096940 2.75728232422165 1.93328724388385 2.53294783712005 2.12627397822715 2.94310518429308 3.49685772097612 3.21793890542013 2.61312183702788 2.34761481924623 2.61134271737161 2.73884459459918 2.32580987095158 2.61879485591339 2.59943618619587 3.03935477791104 3.31517898100998 0.172626207898546 0.170352761534587 0.172208580007861 0.171023614126158 0.166581385418128 0.170169074974209 0.174232567035489 0.166889970341608 0.173140648546807 0.169648593502578 0.172105459168638 0.167149694233854 0.171232021046587 0.171916380768575 0.192901011513593 0.171287849762569 0.167519362639307 0.169144663650879 0.175814528604779 4 4 + 14124228 14124968 14124708.364 14123495 14125058 + gene protein_coding_gene FALSE TRUE AT4G28580.1 magnesium transporter CorA-like family protein (MRS2-6) similar to magnesium transporter CorA-like family protein [Arabidopsis thaliana] (TAIR:AT3G58970.1); similar to Mg2+ transporter protein, CorA-like [Medicago truncatula] (GB:ABE89684.1); contains InterPro domain Cytokine, four-helical bundle; (InterPro:IPR012351); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) -0.445563416016925 -3.33237185916053 0.00677922227391353 1 3.14462260739127 5.55444841746776 -0.445563416016925 0.175416098259505
AT3G59640_at 5.94012598591608 6.4675278413893 6.74581252806985 6.78254590274724 6.57220532242102 7.15745046343884 5.28046983955961 5.79013173070947 5.26347945713802 5.83038277196417 5.23156338973319 5.0977043023443 5.32018177613471 5.63514105118794 5.17652809349944 5.72262479203045 5.98884612504535 5.17724813158287 5.44655095041478 0.187524437875358 0.181885456678292 0.180048948574675 0.180459934686299 0.18160078474922 0.187968271896244 0.182455731571668 0.182954164141906 0.193939821948668 0.179469420506878 0.179882040115411 0.187226949655463 0.182046272559989 0.185616175454744 0.195589071305677 0.183074530695053 0.186495979618478 0.183982149903540 0.187364640786438 3 3|0 +|/ 22040226 22041225 22040697.8 22039751 22041422 + gene protein_coding_gene FALSE TRUE AT3G59640.1|AT3G59640.2 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43630.1); similar to glycine-rich protein, related [Medicago truncatula] (GB:ABE86768.1) 0.425099176315706 3.33233335671023 0.00677968234126236 1 3.14456272061862 11.8081340855483 0.425099176315706 0.162502768630204
AT4G37380_at 3.46657740620827 4.15367589947224 3.91389491944677 4.19437380552618 3.95202232630665 4.68481883121288 3.64775241209311 4.02017684334948 4.50611662291349 4.40265526059184 5.05437165961475 4.99907784594931 4.5282632482112 4.72893349463367 5.53251522550546 5.72661072990135 5.27189709093901 4.41337242518316 4.44776484102645 0.23492021866597 0.235449474584585 0.231471113986375 0.226878078288109 0.235177266278813 0.231896866696945 0.232995795684061 0.228231832350832 0.225464559422487 0.229511147129327 0.227737773639745 0.230636625706749 0.225464559422487 0.231019824622761 0.234579224154037 0.233571210887947 0.23310376682266 0.233914144290891 0.234544925573205 4 4 - 17572034 17572524 17572257.636 17572034 17573932 - gene protein_coding_gene FALSE TRUE AT4G37380.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Os07g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058748.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.471966568578661 3.33161693460877 0.00678824871968509 1 3.14344837788963 8.7461911170367 0.471966568578661 0.191650787330337
AT2G29060_at 3.03155043148781 3.34223442678940 3.34182713368912 3.47212561878241 3.52999974305707 4.11957594640353 2.63994687450542 2.84303618548538 2.74235373608279 2.77610067968348 3.02512929051325 2.70552750391372 2.84290501275600 2.94381903507940 2.57050908954965 3.18976948008305 2.76507487761035 2.85167412041093 2.82407562789225 0.204258957824825 0.204258957824825 0.213478181458805 0.208727561219191 0.21032856211329 0.219215291410985 0.212581678659562 0.205094434588850 0.216343310034672 0.208552445205323 0.207460441732047 0.209183547214245 0.209360828707464 0.205888510181638 0.205644953781385 0.204258957824825 0.217723369014779 0.207120388125495 0.209751713997613 2 2 + 12493488 12493973 12493679.818 12489068 12494060 + gene protein_coding_gene FALSE TRUE AT2G29060.1 scarecrow transcription factor family protein similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G07520.1); similar to putative scarecrow gene regulator [Oryza sativa (japonica cultivar-group)] (GB:AAU44199.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.366323917134699 3.33069895088835 0.00679924136969247 1 3.14202046898029 6.11135924458787 0.366323917134699 0.122655062269413
AT3G45530_at 1.24793191018565 1.15073156883111 1.33592832554663 1.38601412212360 0.94063458043238 1.29915633616642 1.7262260399372 1.07898575580309 2.12845552840870 1.94679021632375 1.37063629418081 1.52659936550471 1.53326252018039 1.23211675147278 1.37083265343266 1.06201058027953 1.00447186796686 1.41880469084872 1.94193274574737 0.216722498873342 0.213522949631363 0.218793624865061 0.218417933879693 0.214966869810381 0.214574423721479 0.220142247332886 0.223989079749557 0.226598482539069 0.213433508014919 0.216939830774314 0.219107023301388 0.228349288505784 0.215363788920023 0.220325283652690 0.214803715576344 0.231582234030425 0.218559623644425 0.218053240890446 3 3 - 16712332 16712794 16712522.818 16712118 16714351 - gene protein_coding_gene FALSE TRUE AT3G45530.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42840.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G27473.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28650.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.375709900315987 -3.33064161896298 0.00679992850978527 1 3.1419312881694 2.93098508186655 -0.375709900315987 0.129434515028417
AT1G50420_at 4.22245330797385 5.17853165267322 5.3324961540478 5.91139449930838 5.31207144754226 5.00884356101383 3.93553652777712 4.29230397819945 3.74175890635333 4.22249086311634 3.98746752228557 3.78211919800932 4.35801931338872 3.77852823249968 3.58923327175148 4.05177370150797 4.40135709795961 4.04718601345314 3.97349685110684 0.257530733156800 0.246524830922268 0.253626129110562 0.253437954484199 0.250236396443391 0.246079994486651 0.260320866057361 0.253021202915418 0.245724837415053 0.251113808020252 0.245724837415053 0.249465836882451 0.245724837415053 0.256943953014048 0.270297228942298 0.249426329660761 0.261131096719594 0.251572974787866 0.253409128787603 1 1 - 18681862 18682386 18682092.455 18681594 18683770 - gene protein_coding_gene FALSE TRUE AT1G50420.1 SCL3 (SCARECROW-LIKE 3); transcription factor Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). similar to SCL21 (SCARECROW-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT2G04890.1); similar to Os01g0948200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045391.1); similar to SCARECROW-like [Oryza sativa (japonica cultivar-group)] (GB:BAC15790.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.502103359576797 3.33020688182338 0.00680514127226984 1 3.14125503960843 8.8885585997582 0.502103359576797 0.209706214963858
AT1G75990_at 6.91564572779014 7.0015303600308 6.24833014915488 6.44776022514725 6.32718669961896 6.17794487346935 6.40251611980694 6.29083672426592 6.78630555882651 5.86175534505501 5.93203058205058 6.50704904630614 5.67414591194428 6.56212361635874 6.35468161684124 5.84335256771393 5.59380805848888 6.03490952378643 6.20962051281497 0.188551844066646 0.194383032237504 0.194928511818422 0.194526386469844 0.187027664634542 0.194145786945746 0.192219537313846 0.187325456225603 0.207700743294383 0.187738369727972 0.187885291054279 0.191963098232194 0.183801295200915 0.189184723053573 0.190155194139568 0.183622600225232 0.205107008323174 0.188745880895081 0.192021226422832 1 1 - 28528390 28528923 28528606.545 28528160 28530437 - gene protein_coding_gene FALSE TRUE AT1G75990.1 26S proteasome regulatory subunit S3, putative (RPN3) Identical to Probable 26S proteasome non-ATPase regulatory subunit 3b (26S proteasome subunit S3-b) [Arabidopsis Thaliana] (GB:Q9LQR8); similar to EMB2719 (EMBRYO DEFECTIVE 2719), binding [Arabidopsis thaliana] (TAIR:AT1G20200.1); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:P93768); similar to nuclear antigen 21D7 - carrot (GB:JQ2257); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:Q06364); contains InterPro domain 26S proteasome regulatory subunit, C-terminal; (InterPro:IPR013586); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) -0.287728968127528 -3.32959086057046 0.0068125347333832 1 3.14029677515677 12.6507970704114 -0.287728968127528 0.0495232546452455
AT4G39370_at 3.89667178370189 3.78416016156098 3.78302536795347 3.69287849952331 4.10763872408189 4.07356644596048 3.54671446197009 3.45923396556713 2.81782221024752 2.53535527298829 3.41445384571354 3.31432925715608 3.17740283464332 3.4417215777699 2.32799139616943 3.3429472553413 3.29449651609607 3.26259414537967 3.30720054876275 0.221393914611059 0.211541491964619 0.216556421121713 0.220810883523146 0.221732254841088 0.221993423628798 0.214291373789464 0.211307117153675 0.220635841306624 0.223268071456355 0.215600752881021 0.211307117153675 0.211307117153675 0.214129905530883 0.211307117153675 0.214137237549031 0.221594157499792 0.231886870964939 0.216619151499756 4 4|0 +|/ 18307727 18308581 18308191.889 18306232 18308836 + gene protein_coding_gene FALSE TRUE AT4G39370.1|AT4G39370.2 UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G10790.1); similar to putative ubiquitin-specific protease UBP27-related [Medicago truncatula] (GB:ABE94632.1); similar to Os04g0429200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052808.1); similar to OSIGBa0093L02.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66407.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394)|similar to ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT2G22310.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 [Medicago truncatula] (GB:ABE94633.1); similar to OSIGBa0093L02.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66407.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.276390796190287 3.32929563704147 0.00681608090202047 1 3.13983752493514 6.83487856672316 0.276390796190287 0.0297729876395469
AT4G26000_at 5.18899657112255 4.67983068224075 4.44438337120068 4.17504819697094 5.11158175786605 4.82636864789983 4.46646542992864 4.27238429817223 4.12944874303014 4.35793164309874 5.23965834889051 5.06501089432765 5.33643989118766 5.0970851103161 5.28473739068261 5.10578727800944 4.96226071349826 4.00707849803819 4.36685224790513 0.235324370961832 0.238170919970438 0.240686747182777 0.240292704834373 0.241594079532031 0.235324370961832 0.238442565545786 0.241789284467960 0.254758257193710 0.235324370961832 0.235524667181928 0.235324370961832 0.237561372052600 0.238658618016209 0.243187720818551 0.238430444880814 0.257188339119630 0.242393110357574 0.243577591981595 4 4 + 13198686 13199421 13199152 13197255 13199845 + gene protein_coding_gene FALSE TRUE AT4G26000.1 PEP (PEPPER); nucleic acid binding Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway. similar to FLK (FLOWERING LOCUS KH DOMAIN), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G04610.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE84576.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.357469651196234 3.32921700722458 0.0068170257063399 1 3.13971520725138 9.29413310790694 0.357469651196234 0.116192430146925
AT1G16530_at 1.59405985345651 1.86893595484287 2.08035672968741 1.73936890063229 2.11903143346402 2.12456503960151 1.89355127279377 1.60761120264108 1.81187669159028 2.07246195708998 2.89250518912543 2.45092814060436 2.63162455368744 2.55924773271355 2.65530325721792 1.98628933613322 1.99621910844401 2.38777538135610 2.32002897299348 0.211317817162817 0.202791097269697 0.202791097269697 0.209482640512039 0.205327790072608 0.202791097269697 0.2114114787775 0.210099743206517 0.215307431070380 0.207097332922885 0.212488228880828 0.202791097269697 0.210539072261130 0.206626765960079 0.209842252928448 0.205195816147907 0.208484306409166 0.209393395538923 0.210243887375361 1 1|0 -|/ 5651470 5652785 5652062 5651363 5652868 - gene protein_coding_gene FALSE TRUE AT1G16530.1 LOB domain protein 3 / lateral organ boundaries domain protein 3 (LBD3) Identical to LOB domain-containing protein 3 (LBD3) [Arabidopsis Thaliana] (GB:Q9SA51); similar to LOB domain protein 4 / lateral organ boundaries domain protein 4 (LBD4) [Arabidopsis thaliana] (TAIR:AT1G31320.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07117.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.325827500882543 3.32920485330041 0.0068171717580439 1 3.13969630039284 4.13498961237401 0.325827500882543 0.0905229601502877
AT1G03360_at 2.84674178399013 3.11330443616965 2.81033377240306 2.74037080825724 2.39057129429134 2.41674234438852 2.93518512013888 2.84052867158881 2.31110288462142 2.83656092074513 2.4770785319221 2.40452345521985 2.47246089755628 2.09881303521856 2.70741398435508 2.63654890995227 2.1851811049019 2.77250891498202 2.9577547711489 0.179533266609182 0.191520945323514 0.183948500520694 0.185177125365693 0.182838725850817 0.182634535575136 0.177893931060741 0.198355636781519 0.177893931060741 0.178709629815128 0.180918642534116 0.185922337777219 0.184140059033195 0.180340428417498 0.183057225407127 0.178474632853268 0.182375969057455 0.177893931060741 0.184603383509191 1 1 + 825423 826107 825873.182 824537 826285 + gene protein_coding_gene FALSE TRUE AT1G03360.1 ATRRP4; exonuclease similar to Os04g0520000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053332.1); similar to hypothetical protein DDBDRAFT_0183814 [Dictyostelium discoideum AX4] (GB:XP_635135.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.288462768022568 -3.32901220479563 0.00681948721033905 1 3.13939661163348 5.34728342712112 -0.288462768022568 0.0506300192097761
AT3G17590_at 5.67822128164137 5.98525979526824 4.77652367260895 4.49209454944431 5.89475257495081 5.48447150843239 4.43342340915989 4.46754876947026 5.01003279503398 4.46978495152927 3.90694845518168 4.0944097843179 3.64044460407062 3.91162235141637 3.97300320582016 3.87527519193389 3.55813676909677 4.11696421373203 4.26918040792986 0.249768428520484 0.239380349249747 0.250977082556074 0.242720482210396 0.245861508560126 0.251812662523032 0.241220939057126 0.245476475947159 0.256172818402205 0.239380349249747 0.243301082982897 0.250857643945725 0.239380349249747 0.256538815544136 0.241961487759411 0.241152620632953 0.245045048107209 0.241248738293582 0.239380349249747 3 0|3 /|- 6017936 6019176 6018730.8 6017216 6019671 - gene protein_coding_gene FALSE TRUE AT3G17590.1 BSH (bushy growth) Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes. Identical to Chromatin structure remodeling complex protein BSH (Protein bushy) (SNF5 homolog) (BSH) [Arabidopsis Thaliana] (GB:P93045;GB:Q9LUN8); similar to putative SNF5 homolog BSH (bsh) [Oryza sativa (japonica cultivar-group)] (GB:BAD13031.1); similar to Os02g0723700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047974.1); contains InterPro domain SNF5/SMARCB1/INI1; (InterPro:IPR006939) -0.338775775205343 -3.32828290205099 0.00682826001777724 1 3.13826206730335 9.38533692351063 -0.338775775205343 0.101597630978027
AT3G27080_at 8.13694324941756 7.99322511408972 7.96167992706265 8.0108828194835 8.17578271011514 7.69575816657975 7.978595394509 7.95717384518703 5.99467714228768 6.72807552090932 7.28519249131767 7.7189987106623 7.19327459214474 7.08481205482257 7.32071371864428 7.12466901382517 6.85655498321561 6.42581421052614 6.55762958259883 0.205645220553421 0.205281735909613 0.212678051182778 0.203220576633458 0.205467364756218 0.210323402463562 0.205828170850078 0.204651541513961 0.221040169350162 0.204506073220063 0.206777248842174 0.203220576633458 0.208035739987483 0.210190600407147 0.211997178750163 0.206968567561141 0.217838791401419 0.210150348880746 0.208945270186394 3 3|0 -|/ 9986459 9987528 9986910.222 9986319 9987866 - gene protein_coding_gene FALSE TRUE AT3G27080.1 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); protein translocase Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins Identical to Mitochondrial import receptor subunit TOM20-3 (Translocase of outer membrane 20 kDa subunit 3) (TOM20-3) [Arabidopsis Thaliana] (GB:P82874;GB:Q9LSC8); similar to TOM20-1 (TRANSLOCASE OUTER MEMBRANE 20-1) [Arabidopsis thaliana] (TAIR:AT3G27070.1); similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) (GB:P92792); contains InterPro domain Plant specific mitochondrial import receptor subunit TOM20; (InterPro:IPR010547); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.322000572486151 3.32792414053548 0.00683257980203934 1 3.13770394438091 14.7652790552189 0.322000572486151 0.0872096392215186
AT3G51730_at 11.5419193348327 11.8444823025560 12.1629141578297 12.3482046529349 12.4547025562124 12.0797820525454 11.9830522607752 12.1641687085912 11.4410132902178 11.5349486842861 11.7726184005789 11.4370055276551 12.0887217891617 11.9191467349933 11.3008769023367 11.9694383210412 11.6630279451391 11.7306013920667 11.3808596496085 0.0913670514706827 0.0862018089440823 0.0889449799920507 0.0873797125072733 0.0881941086944339 0.0926655978483147 0.0932854774741236 0.0881787024344278 0.0930472382767244 0.0862018089440823 0.0871154603462325 0.0862018089440823 0.0878542786758476 0.0871430463387666 0.0907506349239596 0.0862018089440823 0.0930754064965191 0.0924941061043705 0.0873635529677408 3 3|0 +|/ 19197991 19199290 19198472.3 19197645 19199670 + gene protein_coding_gene FALSE TRUE AT3G51730.1 saposin B domain-containing protein similar to saposin B domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G01800.1); similar to Os01g0166700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042117.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68299.1); contains InterPro domain Saposin-like; (InterPro:IPR011001); contains InterPro domain Saposin B; (InterPro:IPR008139); contains InterPro domain Saposin-like type B, 2; (InterPro:IPR008138); contains InterPro domain Saposin; (InterPro:IPR008373); contains InterPro domain Saposin-like type B, 1; (InterPro:IPR007856) 0.330450477554653 3.3277934298828 0.00683415435977842 1 3.13750059649501 23.6661300039476 0.330450477554653 0.0946666697475988
AT3G20650_at 5.93370563187649 6.36945107100977 6.69809606876387 6.29985230684285 7.4694449760419 6.94747319127532 6.98951441942185 5.87302401323188 4.80441495758214 5.29246108912135 5.79310572452985 5.89538690311309 5.50843943647077 5.36402391259061 5.60520038481973 5.94015610060471 5.73991408368673 5.29154681378788 5.23151849267746 0.261289422173375 0.255213553222503 0.26629139856567 0.261934615734217 0.251908300691703 0.271071371392453 0.254913974263167 0.253762363847805 0.280455123537596 0.250139070072413 0.250139070072413 0.257163631137129 0.250139070072413 0.260070650644983 0.265999916923192 0.250759327559033 0.252169865656046 0.25921499525818 0.255662502669832 3 3|0 -|/ 7221353 7222721 7222057.6 7220805 7224091 - gene protein_coding_gene FALSE TRUE AT3G20650.1|AT3G20650.2 mRNA capping enzyme family protein Identical to mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1) [Arabidopsis Thaliana] (GB:Q9LHQ7;GB:Q3EB33); similar to mRNA capping enzyme family protein [Arabidopsis thaliana] (TAIR:AT3G52210.1); similar to Os08g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061136.1); similar to mRNA cap methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55592.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain mRNA capping enzyme, large subunit; (InterPro:IPR004971) 0.547524837668048 3.32441986688486 0.00687492123614442 1 3.13225190761974 11.9484134680134 0.547524837668048 0.236489031731613
AT4G28640_at 5.15839306896331 4.99896083537989 4.53655063154336 4.35394743389519 4.97071803425497 4.34338040819818 4.72802648525872 4.88054960916939 4.83270018188719 4.37440248738721 4.12008305348579 4.73011557600463 4.11720346969506 4.52270807765957 4.65354280723386 3.83268993959999 3.77091881214782 3.98623894359236 4.43872368375931 0.231998389180086 0.229276239262568 0.228246784285305 0.228246784285305 0.229316848950253 0.242806308221483 0.228246784285305 0.233584407967868 0.236681477034727 0.228246784285305 0.229748252877041 0.234460515116091 0.230621855952934 0.241302542858064 0.228246784285305 0.230750973018601 0.233676209636039 0.231296875640959 0.233415763907352 4 4|0 +|/ 14142445 14143629 14143147.6 14142141 14143975 + gene protein_coding_gene FALSE TRUE AT4G28640.1|AT4G28640.2 IAA11 (indoleacetic acid-induced protein 11); transcription factor|IAA11 (indoleacetic acid-induced protein 11) Auxin induced gene, IAA11 (IAA11). Identical to Auxin-responsive protein IAA11 (Indoleacetic acid-induced protein 11) (IAA11) [Arabidopsis Thaliana] (GB:Q38829;GB:Q8LPJ8); similar to IAA10 (indoleacetic acid-induced protein 10), transcription factor [Arabidopsis thaliana] (TAIR:AT1G04100.1); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.361127286068543 -3.32419320179905 0.00687766919635581 1 3.13189922766557 9.12896399796885 -0.361127286068543 0.119342286102612
AT3G23710_at 4.85199976619192 5.02154957430358 4.5791474369146 4.6997105684068 4.74671545549308 4.72842918766964 4.87916949160838 4.89264735380704 4.31750281835018 4.33438073864719 3.62333556021497 3.52889722807697 3.70619946184714 3.53843190657223 3.58062381120682 3.98212548039501 4.46117377587475 4.00471122475436 3.76094535740605 0.242338099780285 0.228598258991372 0.231770113573344 0.229002533349960 0.230529285571445 0.242256926017341 0.228598258991372 0.235652383956347 0.228598258991372 0.232304382674342 0.238456656387617 0.234990897515001 0.234058404660484 0.232584071721863 0.233837617191383 0.228598258991372 0.231990251150593 0.239809660208329 0.233316193823706 3 3|0 +|/ 8534422 8536098 8535149.9 8534039 8536381 + gene protein_coding_gene FALSE TRUE AT3G23710.1 chloroplast inner membrane import protein Tic22, putative similar to chloroplast inner membrane import protein Tic22, putative [Arabidopsis thaliana] (TAIR:AT4G33350.1); similar to Os07g0290800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059394.1); similar to Tic22 [Pisum sativum] (GB:AAC64606.1); contains InterPro domain Tic22-like; (InterPro:IPR007378) -0.278631608186696 -3.31885910427578 0.00694266165596049 1 3.12359862794418 8.7703195764255 -0.278631608186696 0.0362170983719637
AT3G03480_at 0.626404671632916 0.263617854242788 0.639857166060659 0.549452076265277 0.699067408955849 0.0538450161823643 1.69679632006147 1.88332485783166 0.729934299427865 0.491170193098205 0.673932611001387 0.402816387448757 0.788075281153208 0.518174737348243 0.733525624098926 0.445023243112474 0.397529833466353 0.649143049290088 0.88756105249665 0.210946406417341 0.210248942280675 0.211910916195132 0.212660993053958 0.211927624115905 0.208578187748958 0.210679902998305 0.215632193747984 0.20965415912265 0.211426902412385 0.219855084130001 0.222898782949642 0.218366915599632 0.210730818765592 0.209794630758192 0.211786336174928 0.222797176182054 0.213373264343622 0.216080008144237 3 3 - 828456 828934 828737.727 828303 829903 - gene protein_coding_gene FALSE TRUE AT3G03480.1 CHAT (ACETYL COA:(Z)-3-HEXEN-1-OL ACETYLTRANSFERASE); acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17540.1); similar to benzoyl coenzyme A: benzyl alcohol benzoyl transferase [Petunia x hybrida] (GB:AAT68601.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.379420714109407 -3.31865150746961 0.00694520372954162 1 3.12327553970745 1.44100372684037 -0.379420714109407 0.133026275470064
AT3G61130_at 6.73925060360506 6.82012537561884 6.3281102250673 6.19823683682967 7.23671676482595 7.09853045353901 8.80189129658973 8.47014645414515 7.22686720201421 7.540014841293 8.39588632337351 8.25293213100296 7.84612316364842 7.85935233595894 8.0435126454938 7.56380753087789 7.31021549558499 7.79017780243694 7.71173802744671 0.20876526031575 0.191475384389159 0.211131110573514 0.198753226589720 0.191475384389159 0.204231630013793 0.201604749829931 0.196882653507351 0.208922291196825 0.193326137852608 0.201178523456905 0.191475384389159 0.19592936110566 0.195422169256756 0.203162205394449 0.193812914703716 0.218433845029187 0.206136472330372 0.201257317131605 3 3 + 22635804 22636464 22636090.818 22632967 22636691 + gene protein_coding_gene FALSE TRUE AT3G61130.1 GAUT1/LGT1 (Galacturonosyltransferase 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to GAUT3 (Galacturonosyltransferase 3), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38270.1); similar to GAUT2/LGT2 (Galacturonosyltransferase 2), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G46480.1); similar to putative glycosyl transferase protein A [Oryza sativa (japonica cultivar-group)] (GB:BAD61814.1); similar to 68 kDa protein [Cicer arietinum] (GB:CAB81547.1); similar to Glycosyltransferase QUASIMODO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47337.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.301288645397504 -3.31795889851126 0.0069536917732854 1 3.12219759376420 14.8994381440102 -0.301288645397504 0.0675928395611575
AT1G49480_at 8.11070926671222 8.40276132852945 7.84724866880329 7.86308924967573 8.24855341161915 7.98302617885277 7.7697890948776 8.11688873711237 7.71108417465899 7.1848286127412 6.84719332198388 6.84085221443478 7.0906348897933 6.99328013592937 6.82256999189705 7.27428730534993 7.39012092193249 6.84432142664833 7.75074489653875 0.188058915956738 0.18782200356046 0.187130827376854 0.183446343899843 0.191009846875705 0.20138692151829 0.192524937184885 0.185184566160762 0.199013104681113 0.188102054168776 0.192578254697608 0.183527484221793 0.193559849369216 0.202426060641603 0.185798386164270 0.185890604376302 0.185176297438852 0.189292165788606 0.188825358317696 1 1|0 -|/ 18318271 18319019 18318557 18317846 18320313 - gene protein_coding_gene FALSE TRUE AT1G49480.1 RTV1 (RELATED TO VERNALIZATION1 1); DNA binding / transcription factor similar to VRN1 (REDUCED VERNALIZATION RESPONSE 1) [Arabidopsis thaliana] (TAIR:AT3G18990.1); similar to reduced vernalization response 1 [Brassica rapa] (GB:AAR92199.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.325268049110171 -3.31795154365508 0.00695378196515419 1 3.12218614681938 15.3236549523440 -0.325268049110171 0.0910024373476346
AT2G35900_at 7.23720510080254 7.45013263332277 7.19273587053036 6.9577297169385 7.00833918123232 7.65145000194246 6.59048197023125 6.83061469615768 6.68852977725417 6.48338058859646 7.32902016445681 7.0016761628115 6.97820896144808 7.0592583271362 7.77450255584256 7.08415351297448 7.84048546930934 7.09917329474913 6.90924079135602 0.185975347331932 0.183279763421303 0.185248685303988 0.18763352356487 0.181596745540775 0.184270455402873 0.191741458382181 0.191230963932252 0.183742311915637 0.190793920854702 0.18324143950817 0.18523523114564 0.187450633940452 0.188884935148893 0.184278096591889 0.181596745540775 0.181596745540775 0.185492743725979 0.181761838317654 2 2 - 15077309 15078585 15077846 15077076 15078732 - gene protein_coding_gene FALSE TRUE AT2G35900.1 similar to Mal d 1-associated protein [Malus x domestica] (GB:AAP86780.1) 0.376273923110574 3.31788182393417 0.00695463699048473 1 3.12207763631992 14.0970995756413 0.376273923110574 0.130861973257539
AT1G67510_at 3.66033103003344 3.89909435265452 2.71984137561523 2.87716960613929 2.99736472612831 3.63722070706213 2.35150139951989 2.62804296072696 2.90893386608844 3.01895133701775 4.14360515243276 3.92608826066448 3.77596519634251 4.03178115588716 3.62509918989459 3.08010444171718 3.88193408219612 3.80928912761725 2.94173132054004 0.248785049025256 0.244541696829811 0.244541696829811 0.245404726310157 0.247276326133506 0.248594514583072 0.246066258199333 0.248876039039001 0.256828986868178 0.246264075035928 0.249757867850044 0.24618710985064 0.244916796911088 0.25200956820392 0.247980294732266 0.244541696829811 0.250975422991384 0.247765896411059 0.251009274183061 1 1 - 25301170 25301673 25301392 25301140 25303847 - gene protein_coding_gene FALSE TRUE AT1G67510.1 leucine-rich repeat family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01210.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os12g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066458.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.375425576315564 3.31632575331371 0.00697374821699215 1 3.11965571206838 6.46670685326468 0.375425576315564 0.130383914177175
AT2G28690_at 1.12263894300305 1.15277188101355 1.34893792051188 1.56622675004673 1.72990431202630 1.07573668299609 1.11811019886395 0.833688203705052 1.10684023080373 1.47164764680898 1.20384892383320 1.83227975740824 1.35744436855238 1.71981285076813 1.37022611944238 1.58904806218305 1.76247163169538 1.44797306152000 0.906252359205476 0.234596047035923 0.227377415024801 0.235180634628483 0.228616436873465 0.229332346310219 0.235385263598477 0.223738701120072 0.232176872051242 0.233648328476612 0.229478592972253 0.223738701120072 0.225123690626384 0.223738701120072 0.226890169902000 0.225196298004885 0.223738701120072 0.228469906103362 0.223738701120072 0.226067073910738 2 2 - 12314258 12314740 12314449.273 12313967 12315705 - gene protein_coding_gene FALSE TRUE AT2G28690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59760.1); similar to Os05g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054464.1); similar to 4D11_4 [Brassica rapa subsp. pekinensis] (GB:AAZ67518.1); similar to OSJNBa0095E20.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE02422.2); contains InterPro domain Protein of unknown function DUF1635; (InterPro:IPR012862) 0.373603563867402 3.31550027269457 0.00698390830231556 1 3.11837083891456 2.59198594945320 0.373603563867402 0.129149524306108
AT1G51480_at 1.06291864296095 0.859521778764482 1.17594058904367 1.24296144696759 1.04835332257435 1.09434387391126 0.932190690985437 0.951513334507546 0.98361469736252 0.727529110304685 1.20384526000126 1.07180757288032 1.26028295055093 1.14254564175701 0.82086787040401 1.12268617849266 1.7218111341699 1.42097802354391 0.841236835547582 0.217617690086628 0.218621054359494 0.217022327650141 0.209455639412639 0.209455639412639 0.218562900716428 0.210086954483713 0.210344437632772 0.234846064093459 0.211971644414921 0.209716748725807 0.215646597081878 0.210798675056292 0.21637443396168 0.209455639412639 0.213102415308819 0.220061710504867 0.209455639412639 0.210368654443134 1 1 - 19094520 19095073 19094867.8 19094515 19097974 - gene protein_coding_gene FALSE TRUE AT1G51480.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance protein At1g51480 [Arabidopsis Thaliana] (GB:Q9C8K0); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G43730.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G43740.2); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G15890.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.279336613778176 3.3154910524611 0.00698402187104493 1 3.11835648722504 2.08166627332104 0.279336613778176 0.0380525819712923
AT3G12550_at 4.1116685265018 3.97428420885745 3.81357697355792 3.69187431312409 3.63008126327217 4.1231472822355 3.15831009773168 3.1320807119446 3.21823278553856 3.09565194743837 3.79102834981746 3.6016659593099 3.30803477208209 3.78329856163116 3.90274634472697 3.41527213745025 3.19447326485613 3.65930399439258 3.14303908473202 0.203578458004712 0.201712378370802 0.205194711300258 0.199231461395998 0.206314951541540 0.200148759714377 0.202622830118891 0.209352584381337 0.209651617839186 0.204615161542089 0.198783078855795 0.201704564516774 0.198783078855795 0.212673050979735 0.20925938521869 0.204726545013035 0.207436543288743 0.198783078855795 0.201036546183595 3 3 + 3980412 3981323 3980925.909 3978676 3981379 + gene protein_coding_gene FALSE TRUE AT3G12550.1 XH/XS domain-containing protein / XS zinc finger domain-containing protein similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48670.2); similar to At3g12550-like protein [Boechera stricta] (GB:ABB89773.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379); contains InterPro domain Region of unknown function XS; (InterPro:IPR005380); contains InterPro domain Region of unknown function, putative Zinc finger, XS and XH; (InterPro:IPR005381) 0.325127027792769 3.31469117806096 0.00699388137545627 1 3.11711142687991 7.07152085328797 0.325127027792769 0.0911602409894164
AT4G00630_at 8.4174088091463 8.50377473690783 8.32616819803192 8.32956153394097 8.60951054373486 7.89078532038598 9.5236774962798 9.24793657922653 8.39037509401544 8.344160366776 8.00153466818697 7.95354484511062 8.18790654352101 8.06311571437675 8.0815189361479 8.51050982225221 8.48110190903391 7.96211508919222 8.11009994982937 0.159699887494742 0.155231634136674 0.161008233117066 0.160609360766498 0.156489265423265 0.173950597637254 0.169990127917232 0.15864978059323 0.159765150975093 0.158254660529017 0.165371068828904 0.163053881019033 0.157370763685779 0.168034994704392 0.159532360797549 0.162801789651598 0.172803153595668 0.166458994242370 0.159317661141934 4 4|0 -|/ 261655 263039 262246.556 261655 265958 - gene protein_coding_gene FALSE TRUE AT4G00630.1 KEA2 (K+ efflux antiporter); potassium:hydrogen antiporter member of Putative potassium transporter family similar to KEA1 (K EFFLUX ANTIPORTER 1), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G01790.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); similar to Os04g0682800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054299.1); similar to TrkA-N [Medicago truncatula] (GB:ABD28435.1); contains InterPro domain Potassium efflux system protein; (InterPro:IPR004771); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain TrkA-N; (InterPro:IPR003148) -0.380284851131295 -3.31342880083782 0.00700947075935644 1 3.11514636234891 16.8244596911324 -0.380284851131295 0.134055339402327
AT1G42710_at 2.06276307785084 2.28370641232053 2.15821696388730 2.20368352759269 2.14452336999582 1.91803196914367 2.31978281098694 2.22557910548787 2.70273489928636 2.49897676940017 2.15381583873842 1.70202906691250 2.17964685354161 1.90070580211886 1.60151225930895 1.5751552065533 2.54943022502974 2.32551991204058 2.19762026011625 0.206980971273448 0.203072398620835 0.201920521298031 0.207614435737947 0.201417063988312 0.204582762529621 0.206968258438136 0.209458023960794 0.218528353992559 0.210203879660116 0.202012501851842 0.202120463544422 0.202877380319074 0.205494182676679 0.211702406453286 0.21030511777189 0.201603868124603 0.205380500460053 0.20647009972475 1 1 - 16080064 16080962 16080536.727 16080032 16081007 - gene protein_coding_gene FALSE TRUE AT1G42710.1 similar to hAT dimerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19260.1); similar to OSJNBa0028M15.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE05818.1); similar to hAT family dimerisation domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96757.1); contains domain GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN (PTHR11697); contains domain gb def: Hypothetical protein F8D11.16 (PTHR11697:SF18) -0.292405487371886 -3.31323620946156 0.00701185223159654 1 3.11484655799973 4.39699634055725 -0.292405487371886 0.0576705435058558
AT3G06700_at 8.39413335705294 8.7646453637304 7.8064880755051 8.2128105108524 7.51472589513806 7.72652837501774 8.27465295221564 8.94073174543193 8.28277907334649 7.9924634832895 8.08573903949146 8.70790030799873 7.89854139701127 8.25119775326367 8.5603790197849 7.76776007779351 7.7530925136923 7.58179895372546 8.07350658753686 0.139658470293147 0.142383447927773 0.13710170230248 0.141374512324268 0.144332938861392 0.143531229814594 0.147208192188815 0.146542911663148 0.149460350622422 0.14173718336293 0.141195590385065 0.141029163471115 0.139537758152824 0.145209939601325 0.141944848263131 0.144826801498656 0.142145296400457 0.143521176875364 0.139442946338299 3 3|0 -|/ 2117525 2117761 2117628.1 2117355 2118013 - gene protein_coding_gene FALSE TRUE AT3G06700.1|AT3G06700.2|AT3G06700.3 60S ribosomal protein L29 (RPL29A)|structural constituent of ribosome Identical to 60S ribosomal protein L29-1 (RPL29A) [Arabidopsis Thaliana] (GB:Q9M7X7); similar to 60S ribosomal protein L29 (RPL29B) [Arabidopsis thaliana] (TAIR:AT3G06680.1); similar to Ribosomal L29e protein [Medicago truncatula] (GB:ABE83198.1); contains InterPro domain Ribosomal L29e protein; (InterPro:IPR002673) -0.409425611179265 -3.31291354085985 0.00701584401431978 1 3.11434425872988 16.3003649581527 -0.409425611179265 0.15390177683741
AT1G56580_at 10.5170738013744 10.6637659600369 9.91217876611596 10.1239819251144 10.4951155176568 10.3441290949039 10.9305256596213 11.1586723075016 10.4900918050163 10.6756922175396 10.8761155321015 11.1189328511596 10.4417170940607 10.3312279307998 10.8497180453422 10.4171225239546 10.160764244348 10.4306450112106 10.5638885778823 0.0677662954373258 0.066421220641333 0.0675476004754049 0.0669912673124469 0.0653866564259707 0.068794075012078 0.0672683664402379 0.0671287857564633 0.0689068814122102 0.0668847003969713 0.0682983442508111 0.0653866564259707 0.067127827490082 0.0716006195270537 0.0674152510448358 0.0669981819046515 0.0698180358390589 0.0681034550239597 0.0703038300693746 1 1 - 21202135 21202454 21202280.455 21201924 21202621 - gene protein_coding_gene FALSE TRUE AT1G56580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09310.1); similar to Os12g0563600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067038.1); similar to Os11g0683600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068462.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC15899.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.298467617771533 -3.31204075544510 0.00702665300637317 1 3.11298555639129 21.0955993478414 -0.298467617771533 0.065034246672305
AT3G50620_at 1.60515198263829 1.70084886901945 1.22019535675835 1.47721903090326 1.47787671831925 1.66910067096676 1.38272091903816 1.63989652114200 0.887519984273356 1.47629892975357 2.0903123459534 1.92827642260333 1.68062296182321 1.84806730952197 2.58368052209002 2.01301083563534 1.80812803680789 1.77049683369985 1.33442002523442 0.176776652081794 0.169890548477288 0.174350771550922 0.179701415037532 0.169890548477288 0.173438677304609 0.172035968963875 0.175872852049910 0.178660355199710 0.17809165666928 0.172957529845511 0.176742406303507 0.176072223787327 0.172833540446059 0.169890548477288 0.178728832987932 0.176274677093414 0.184649552249046 0.173949582770654 3 3|0 -|/ 18796245 18796788 18796517.889 18795676 18797895 - gene protein_coding_gene FALSE TRUE AT3G50620.1 nodulation protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15730.1); similar to At2g15730 [Medicago truncatula] (GB:ABE83382.1); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) 0.305760733353596 3.3115952402306 0.0070321770329149 1 3.11229198447356 3.12066161940019 0.305760733353596 0.072996449782614
AT1G29690_at 6.05235608579275 6.04854377989614 5.98549685884919 6.31862747596982 5.86346771756523 5.73978929304021 5.39594478800324 5.25735566682304 5.33000170313041 4.84752062627228 5.63665381172994 5.09503451655101 4.94972737493 5.4077897279422 5.46837907403872 5.10787015041536 5.76287717116717 5.28730475995216 4.91001694673708 0.229755676178963 0.231812890665391 0.226438449143765 0.234476488510129 0.228079066862389 0.234195580291863 0.22607991065462 0.234258340297912 0.232119712832552 0.238731703695624 0.227577782200048 0.227517210982205 0.228786432525321 0.239807593481419 0.232452080694684 0.227594159060491 0.22645811832549 0.230594715061679 0.237405718973096 1 1 - 10379470 10379841 10379677 10379012 10382109 - gene protein_coding_gene FALSE TRUE AT1G29690.1 CAD1 (CONSTITUTIVELY ACTIVATED CELL DEATH 1); oxidoreductase Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24290.2); similar to Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79511.1); similar to hypothetical protein MA4_82I11.22 [Musa acuminata] (GB:ABF72020.1); similar to hypothetical protein MBP_81C12.22 [Musa balbisiana] (GB:ABF70092.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; (InterPro:IPR000674) 0.299285035427443 3.31154760745863 0.00703276790287456 1 3.11221782966049 11.0170148742695 0.299285035427443 0.0660093733052056
AT1G45160_at 7.29246703852638 6.87971084983812 7.29824105107583 7.25243957904116 7.98596535335937 7.56995592956399 7.26617664760154 6.83238403033045 6.633419493679 6.59308576586768 6.68425389687553 6.91009951937099 6.9541035614894 7.07625886268522 6.614050423723 7.26189119787017 7.22201683882037 7.25887864968632 6.92801030509609 0.170352110674444 0.173184021104130 0.170687323346075 0.173402377938930 0.174819931642117 0.177937190780191 0.166961482270009 0.169124462983198 0.177392540521359 0.175448829233762 0.174661532527435 0.186541677945980 0.174323322631262 0.182052149361903 0.172140687224806 0.172493202200343 0.177741161285778 0.176499058103476 0.172946847242727 1 0|1 /|- 17086264 17088049 17086937.875 17085986 17092985 - gene protein_coding_gene FALSE TRUE AT1G45160.1|AT1G45160.2 kinase| similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to IRE (INCOMPLETE ROOT HAIR ELONGATION), kinase [Arabidopsis thaliana] (TAIR:AT5G62310.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to nodule-specific IRE-like protein [Medicago truncatula] (GB:AAX11214.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.369244050310084 3.31034493933262 0.00704770344123743 1 3.11034546362524 14.1551005467651 0.369244050310084 0.126425323794822
AT1G71810_at 6.7246797519815 6.62228870712828 6.87913749464371 6.3188858543099 7.23472027764364 6.21402529501937 8.44577193814122 8.06813340488704 7.18972114408535 7.692350120987 7.03532231495261 7.39121465159642 7.68115868196432 7.78496927158487 7.03256358989259 7.97837323837726 7.11421863198069 7.07079670496526 7.8892680198326 0.193277814042842 0.190465187753441 0.20519938328527 0.200106622707668 0.195984144775014 0.207237446516847 0.210375197045448 0.202302014082739 0.195718554627264 0.191901001142697 0.198903971823287 0.197563078744723 0.194003765256619 0.190465187753441 0.195404780051065 0.195841869903658 0.208813056142924 0.207508146098930 0.196882699298599 1 1|0 -|/ 27006282 27007613 27006720.111 27006076 27011838 - gene protein_coding_gene FALSE TRUE AT1G71810.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to OSJNBb0003B01.25 [Oryza sativa (japonica cultivar-group)] (GB:CAE03633.1); similar to hypothetical protein all4960 [Nostoc sp. PCC 7120] (GB:NP_489000.1); similar to Os04g0640500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054036.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.503947756383875 -3.31024863766554 0.00704890077926273 1 3.1101955328949 14.5517171224523 -0.503947756383875 0.212568259643552
AT2G35930_at 3.58514708287958 4.13245358357395 3.04510072544558 2.97867570622629 2.92591218465174 3.00585021347111 2.63043263526602 2.26953084092056 3.08834023147311 2.73729010923108 2.26319759864857 2.49212728949209 1.97671852986544 2.01052645362476 2.33331523828492 2.38476994433603 2.37920436892303 2.74025850610086 2.76688352657474 0.290556645812858 0.303794390788826 0.273699004764055 0.287281182219289 0.278618088142090 0.285309171863102 0.274535624661359 0.273699004764055 0.278596531586402 0.276070811014970 0.280979327964599 0.273699004764055 0.273699004764055 0.275274094168449 0.28305174124583 0.273699004764055 0.288016454255921 0.279720984208629 0.273699004764055 2 2 - 15090181 15090699 15090481.909 15089934 15091552 - gene protein_coding_gene FALSE TRUE AT2G35930.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52450.1); similar to U-box protein [Capsicum annuum] (GB:ABA59556.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.353581438072434 -3.30917350034735 0.00706228228780602 1 3.10852162523299 5.66498088668057 -0.353581438072434 0.114869311482746
AT1G05620_at 4.62131278134117 4.56066927302722 5.27094299403998 4.6383123400869 4.72929165900979 4.36948481194832 4.41807564257765 4.50044925545857 3.33272526945671 4.18856399813677 4.45805785615674 4.15660567960594 4.18079438477056 4.53105998300867 4.04568383884376 3.91435705722268 4.3857121088399 4.19519640590281 3.63942442627978 0.2358604197493 0.235707078563547 0.238933837465565 0.242810879912447 0.232892238697734 0.236966916027041 0.233928087379269 0.240229557805274 0.256864844859836 0.245390744862204 0.233124008186529 0.240192257177215 0.235011431053373 0.237133826946478 0.235712345830487 0.232892238697734 0.255452160656703 0.246728297026584 0.246537101212721 1 1|0 +|/ 1680265 1681477 1680949.556 1679157 1681707 + gene protein_coding_gene FALSE TRUE AT1G05620.1 inosine-uridine preferring nucleoside hydrolase family protein similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G36310.1); similar to Os03g0425200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050402.1); similar to putative inosine-uridine preferring nucleoside hydrolase, 3'-partial (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07208.1); contains InterPro domain Inosine/uridine-preferring nucleoside hydrolase; (InterPro:IPR001910) 0.370038364753111 3.30805374831402 0.00707624665747045 1 3.10677817542388 8.61540300081202 0.370038364753111 0.127185825390292
AT4G36400_at 6.31347704696503 6.91263906927416 6.70576752125079 7.20960722228444 7.81052835174423 7.35546492023548 6.86699880499749 6.49717926140649 6.11917570967902 6.13068359206572 5.927240484195 5.74510431009899 6.28566769956053 6.12715351118391 6.10087744654776 6.35033136183052 6.43069608865133 6.68657551059697 5.64358309489795 0.221946268649784 0.206555483045139 0.220000993966571 0.227472481154775 0.212005556196558 0.224822847614607 0.209556836656108 0.216431147488777 0.219158309944364 0.207929693426213 0.207275738155520 0.209896159000575 0.211704358168506 0.220915539941365 0.207166413984802 0.206555483045139 0.234156371140151 0.214751072507799 0.210628369615922 4 4|0 +|/ 17199447 17200432 17199886.5 17197215 17200924 + gene protein_coding_gene FALSE TRUE AT4G36400.1|AT4G36400.2 FAD linked oxidase family protein similar to FAD linked oxidase family protein [Arabidopsis thaliana] (TAIR:AT5G06580.1); similar to putative actin interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79943.1); contains InterPro domain FAD linked oxidase, C-terminal; (InterPro:IPR004113); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) 0.432496730460087 3.30752929019380 0.00708279683722349 1 3.10596156790491 13.0445510750018 0.432496730460087 0.169266463845552
AT3G47295_at 8.56534911390406 9.10712469351216 6.78849712321692 7.2732340161941 8.74862865779869 8.16127280994228 9.06955255509001 9.08404436777403 9.43849192390435 8.8587763663207 10.1442437760112 10.3898413924644 9.71958088363786 9.72137234633201 9.62266764166516 9.36678998470394 8.96436561286445 8.83868181055515 9.37410104263046 0.167247109979416 0.164067559084730 0.207793711014260 0.191236132868395 0.162378468588100 0.178861572671116 0.162893760731237 0.166660279743812 0.169575154448918 0.165754368992212 0.161857657718054 0.160587286479792 0.160587286479792 0.160587286479792 0.161778794482795 0.160587286479792 0.168908298509795 0.175264141919736 0.167123814018232 3 3|0 +|/ 17439053 17439332 17439200.1 17438935 17439496 + gene protein_coding_gene FALSE TRUE AT3G47295.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58650.1) -0.420728188685654 -3.30712219321969 0.0070878855104848 1 3.10532768519978 17.7595792715029 -0.420728188685654 0.1617563649513
AT3G53990_at 10.8021894081567 10.4774072286289 10.2708540191953 9.9973034083804 11.0276666781713 10.3711876909841 9.53535352317773 9.32351349990115 9.9142989791308 9.89536414542832 10.5448753984659 10.2491321952332 10.2264278028282 10.4372165811488 10.3696479282779 9.58443698521427 9.8014654222605 10.4298706930421 9.62325485928027 0.0846803417572461 0.0836052560902531 0.0829581214908052 0.0834855288353662 0.0863896284998061 0.0796349713196702 0.0916337789808804 0.0842423809299913 0.0909479589852045 0.0805201097193912 0.0788803179844027 0.0792398054980127 0.0806500007830853 0.0808615771639573 0.0803119032467284 0.0784102554744323 0.0853564691449981 0.0798873443458589 0.0779774421599327 3 3|0 -|/ 20001640 20001964 20001828 20000315 20002097 - gene protein_coding_gene FALSE TRUE AT3G53990.1|AT3G53990.2 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to ENOD18 protein [Vicia faba] (GB:CAC18558.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016)|similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to ENOD18 protein [Vicia faba] (GB:CAC18558.1); contains domain no description (G3D.3.40.50.1420); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402) 0.388274249372873 3.30643471697284 0.00709648737209527 1 3.10425720494185 20.2338628256188 0.388274249372873 0.140180073498370
AT4G37910_at 8.86772696112443 9.14492951637012 9.16093829667022 9.28614697901908 8.24578820890156 8.41204539869285 9.44348069582625 9.60473097403311 7.82876463895669 8.35309013438 7.77372271758826 8.28023341117618 7.54312670571542 7.86811213928328 8.45729842061513 8.3183241757786 8.24169785387591 7.73616581410476 8.22656854025705 0.187762757411819 0.187252146254026 0.188956386322457 0.189446895698531 0.188603466588906 0.197586589618256 0.186459816976989 0.190007360251417 0.210009909845220 0.189948376399347 0.195862189209116 0.194799363899297 0.187314932243731 0.190263329554608 0.196413582428655 0.18601059452753 0.196097123210268 0.200011317547953 0.195958429030618 4 4 - 17825370 17825898 17825626.545 17825074 17828174 - gene protein_coding_gene FALSE TRUE AT4G37910.1 MTHSC70-1 (mitochondrial heat shock protein 70-1); ATP binding / unfolded protein binding similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to CPHSC70-1 (chloroplast heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G24280.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:P37900); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE92899.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:Q01899); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Chaperone DnaK; (InterPro:IPR012725); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.298896632890802 -3.30576270166671 0.00710490608231128 1 3.10321076946785 17.1024615084789 -0.298896632890802 0.0661606733822278
AT2G36820_at 2.2714614429789 2.49101644498966 2.34177758928746 2.63902698518832 1.98516964223066 1.98980897598271 2.49984850764018 2.73961289143956 2.60102089021309 2.41561830542515 2.24691928786795 2.26461619943748 2.02568722549511 2.33773239107233 2.09908711283869 2.05833875256552 2.16374054296593 2.13398209556282 2.54724190810244 0.176891304642931 0.177527426930979 0.183021862828287 0.179114518908247 0.186645464716831 0.176458698275726 0.180994763309983 0.183891377500448 0.183655149996299 0.176458698275726 0.176854263606311 0.176458698275726 0.180573190364255 0.181436994940128 0.176589994518355 0.182848308461246 0.182654682276672 0.183226406706915 0.180690922167857 2 2|0 -|/ 15445843 15447713 15446419.875 15445489 15447772 - gene protein_coding_gene FALSE TRUE AT2G36820.1 similar to Hypothetical protein [Oryza sativa] (GB:AAK98733.1); contains domain MAESTRO-RELATED HEAT DOMAIN-CONTAINING (PTHR23120); contains domain gb def: Hypothetical protein At2g36820 (PTHR23120:SF6) -0.308284886930477 -3.30466022553388 0.00711873950256162 1 3.10149397407596 4.71349363607849 -0.308284886930477 0.0762364397508344
AT1G78380_at 12.0717233119087 12.2392273263420 12.7140320106896 12.7203372975403 11.9489462231494 11.9092223430791 12.2915058969138 12.2299087020774 11.5010092321668 11.9369370232074 12.2329709400172 12.28462326415 12.1425491448923 12.0992083471062 12.2410590588972 12.1354661911466 11.8561315898100 12.2447953349781 11.7198666839507 0.0840565278678103 0.080969262200056 0.0809704885516254 0.0821684445535414 0.080969262200056 0.0825318194770798 0.0817633963114858 0.0835594904265064 0.093760750992397 0.0811663443834749 0.080969262200056 0.081663491177996 0.0892542818696807 0.0859567812238129 0.0870495591827601 0.0833300008927584 0.0921894188263574 0.086369268873438 0.080969262200056 1 1 - 29491577 29492496 29491961.364 29491306 29492799 - gene protein_coding_gene FALSE TRUE AT1G78380.1 ATGSTU19 (GLUTATHIONE TRANSFERASE 8); glutathione transferase Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. similar to ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17180.1); similar to glutathione transferase [Carica papaya] (GB:CAA04391.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.275186331701939 3.30458732563924 0.00711965518913758 1 3.10138045029144 24.2025486207873 0.275186331701939 0.0316598068650180
AT4G36480_at 5.73592871380418 5.61922172147665 5.70077994119071 5.30103685387866 6.02445947867173 6.02460083750289 5.90189354918643 4.91296662292633 5.1455358366201 4.08828124252044 5.17118967782678 5.5136316345832 5.15215032727124 5.61363133164059 5.23680293355902 5.05534408451489 4.77554588617887 4.85910809617282 4.19444277617218 0.209694748559972 0.194532404020309 0.202404653620469 0.213554086237049 0.207748029061172 0.201298914064055 0.200886174406599 0.193436835726420 0.204584445105465 0.205646149186306 0.193436835726420 0.193436835726420 0.193436835726420 0.197331371754077 0.198223165104722 0.193436835726420 0.202900643585433 0.199377683675479 0.198338849060646 4 4|0 +|/ 17220195 17221101 17220609.222 17218135 17221480 + gene protein_coding_gene FALSE TRUE AT4G36480.1|AT4G36480.2 ATLCB1 (ARABIDOPSIS THALIANA SPHINGOLIPID LONGCHAIN BASE 1); serine C-palmitoyltransferase Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion. similar to LCB2 (Serine palmitoyltransferase LCB2 (long chain base) subunit gene), serine C-palmitoyltransferase [Arabidopsis thaliana] (TAIR:AT5G23670.2); similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G48780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95571.1); similar to putative serine palmitoyltransferase LCB1 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD19391.1); similar to aminotransferase, classes I and II family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95004.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.458152751996725 3.30283025107790 0.0071417619926061 1 3.09864413181946 10.4767420222827 0.458152751996725 0.185692697734035
AT1G49920_at 2.11653531194997 2.18334644800604 2.51293475439600 2.87900543520348 2.81952111333007 2.84563763759096 2.47295578343553 2.4971799029314 2.95349759082758 2.72715818469815 2.80025413831654 3.09316546682188 3.35185720165634 2.76551159806214 3.18328998424417 2.77373574867100 2.91109915710949 2.89465479815976 2.79117433667885 0.182854463608934 0.180702901158794 0.185704155746373 0.184018262799560 0.180702901158794 0.187138079631286 0.183740026777319 0.183340100554052 0.187533155572762 0.189272205626925 0.181658276637149 0.181562332926612 0.18762186129336 0.187839408460535 0.182898280038236 0.184016557041293 0.210148123562765 0.18545961185478 0.188408297648185 1 1|0 -|/ 18485711 18486112 18485916.5 18485442 18487901 - gene protein_coding_gene FALSE TRUE AT1G49920.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G64260.1); similar to SWIM zinc finger family protein [Arabidopsis thaliana] (TAIR:AT1G64255.1); similar to MuDR family transposase, putative [Medicago truncatula] (GB:ABE90055.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Plant MuDR transposase; (InterPro:IPR004332); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527) 0.297261507222347 3.30198574019099 0.00715241220457 1 3.09732889155276 5.43870923953794 0.297261507222347 0.064691053618311
AT2G14835_at 7.56977117918807 7.59291335612273 7.53577037510302 6.75030209797015 7.99587908575252 7.72413957375314 7.25317380833093 7.58260340326174 6.02619126178496 5.78317885217585 6.90347794757707 6.97136908039473 7.42910801438868 6.76417054528044 6.9356439544893 6.6315475774554 6.50108986998282 6.61550243768267 6.2720896217053 0.247064640184062 0.243185778857434 0.256061947537015 0.259851776032081 0.243185778857434 0.247722267539338 0.247516978241065 0.249845438068114 0.252407126133535 0.244514041022804 0.247923380374813 0.248817699198702 0.250088629327308 0.248842160708133 0.253380532998453 0.250936623571111 0.256971074207369 0.245734772042486 0.252388941563509 2 2 + 6376684 6377666 6377178.727 6373972 6378116 + gene protein_coding_gene FALSE TRUE AT2G14835.1|AT2G14835.2 zinc finger (C3HC4-type RING finger) family protein similar to Hypothetical protein [Oryza sativa] (GB:AAK92653.1); similar to Os10g0346200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064398.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.409371389801597 3.30182496355227 0.00715444161100071 1 3.09707849300397 13.9361400717495 0.409371389801597 0.154771464956137
AT3G23560_at 5.2001021141535 5.83050994380157 5.56150478349893 5.82006162136701 5.15918306779345 4.65289225958005 4.10576097490661 3.97665589246956 4.34647963109044 3.57482330857356 4.03509506569076 4.46313387358507 4.24964849297665 4.73993129584335 3.99260697877985 4.36210037464674 3.773606985889 4.23300521931015 3.93272393198204 0.297723924081859 0.298185777454122 0.291295097702349 0.294276985490606 0.291312039543798 0.30963936948126 0.2866895150454 0.291981244133823 0.285622574927457 0.282851952120521 0.282851952120521 0.287162798447082 0.290715583044994 0.282851952120521 0.298314508994793 0.28381033920096 0.311155985683624 0.290765725340758 0.292405087676603 3 3|0 -|/ 8454415 8455280 8454861.5 8454123 8456688 - gene protein_coding_gene FALSE TRUE AT3G23560.1 ALF5 (ABERRANT LATERAL ROOT FORMATION 5); antiporter/ transporter Member of the multidrug and toxic compound extrusion (MATE) family, protects roots from inhibitory compounds. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G23550.1); similar to hypothetical membrane protein-1 [Marchantia polymorpha] (GB:BAB71817.1); similar to Os07g0502200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059724.1); similar to Os07g0108200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058715.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.399975973509283 3.30088612392827 0.00716630387447006 1 3.09561628174799 9.12957549539077 0.399975973509283 0.148591810240997
AT2G35050_at 10.6273088046880 10.5270981962514 10.8435705545394 10.8317685326987 10.9258730065409 10.7437921169596 10.4318623489870 10.2157273605629 10.5554297236927 10.3278338640643 10.8781193356636 10.5813966608588 10.5702789563297 10.6020925035812 10.4853662793241 10.6543010054866 10.6131289848703 10.5025299714718 10.3851744816638 0.0637906708197289 0.062704400088668 0.0630395617258824 0.0643528996752493 0.062464805431506 0.0663623484823839 0.061817234361423 0.0624059226445293 0.0690773921780695 0.0636422745922602 0.061817234361423 0.061817234361423 0.0640437653907115 0.0636179826422296 0.0627440383463038 0.061817234361423 0.0635514057206406 0.0639512743706454 0.0651482378259497 2 2|0 +|/ 14780829 14781783 14781386.333 14776787 14782114 + gene protein_coding_gene FALSE TRUE AT2G35050.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G79570.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16270.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06418.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.286920448726816 3.30045355267674 0.00717177617667532 1 3.0949425474867 21.1602323161561 0.286920448726816 0.0519305984520783
AT4G01800_at 9.97733099984331 9.9629079409957 9.93411403158702 9.68865902882745 10.0238848035928 9.63962279116175 10.5948509845637 10.2643358931652 10.3788050539487 10.4014061328254 10.1306025975926 10.2465452901854 9.88417093928943 9.98996444550692 10.3189685961911 10.2943963449648 9.9794266928629 10.1310291778230 10.4367665511682 0.0690924725333636 0.066128652394648 0.0694151817804107 0.067770910834726 0.0684671111943147 0.0672998261864402 0.0671567630910392 0.0690473246914556 0.076940959442438 0.0691758105680492 0.0678130062684676 0.0662737427798054 0.0691440303668802 0.0666354506239612 0.071267627047052 0.0652479159315634 0.0683673035285634 0.0678619889850641 0.0669014894019286 4 4|0 -|/ 770930 771724 771373.8 770722 776131 - gene protein_coding_gene FALSE TRUE AT4G01800.1 preprotein translocase secA subunit, putative Identical to Preprotein translocase secA subunit, chloroplast precursor (SECA) [Arabidopsis Thaliana] (GB:Q9SYI0); similar to preprotein translocase secA family protein [Arabidopsis thaliana] (TAIR:AT1G21650.1); similar to preprotein translocase secA precursor - spinach (GB:A57386); similar to Preprotein translocase secA subunit, chloroplast precursor (GB:Q36795); similar to Preprotein translocase secA subunit, chloroplast precursor (GB:Q41062); contains InterPro domain SecA Wing and Scaffold; (InterPro:IPR011116); contains InterPro domain SecA preprotein cross-linking region; (InterPro:IPR011130); contains InterPro domain SecA protein; (InterPro:IPR000185); contains InterPro domain SecA DEAD-like; (InterPro:IPR011115) -0.331028763139232 -3.30042075804232 0.00717219122358982 1 3.09489146901058 20.2744869374835 -0.331028763139232 0.0974888826825298
AT1G60490_at 8.81195715753075 8.60658355786212 8.88082528148209 8.73043966254503 9.17371454275064 8.47410806179807 7.95230228742965 7.52611118736378 7.63155419858152 7.45237982393867 7.42081447338649 7.79974405397567 7.62119589129956 7.79164023641671 7.68300615617833 8.0053454694595 7.93361899661596 8.03247504097099 7.64734418893647 0.185327987060672 0.181966826271952 0.181261039625047 0.180170850222041 0.187622443712287 0.190014233790111 0.187593698001373 0.182275894474910 0.203566468040629 0.188837460747294 0.184399279337916 0.186061505583693 0.180950957559672 0.187916266000919 0.187513635263131 0.180170850222041 0.194804488818329 0.195608101424828 0.188330606748922 1 0|1 /|- 22289501 22290264 22289896.3 22289237 22293980 - gene protein_coding_gene FALSE TRUE AT1G60490.1 ATVPS34 (Arabidopsis thaliana vacuolar protein sorting 34); phosphatidylinositol 3-kinase phosphatidylinositol 3-kinase (AtVps34) Identical to Phosphatidylinositol 3-kinase VPS34 (EC 2.7.1.137) (PtdIns-3-kinase VSP34) (PI3-kinase VPS34) (PI3K VPS34) (AtVPS34) [Arabidopsis Thaliana] (GB:P42339;GB:O22695); similar to ATPI4K ALPHA (Arabidopsis thaliana phosphatidylinositol 4-kinase alpha), inositol or phosphatidylinositol kinase [Arabidopsis thaliana] (TAIR:AT1G49340.1); similar to phosphatidylinositol 3-kinase [Brassica napus] (GB:AAN62481.1); similar to Phosphatidylinositol 3-kinase, root isoform (PI3-kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5) (GB:P42347); similar to phosphatidylinositol 3-kinase (GB:AAA83427.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Phosphatidylinositol 3-kinase, Vps34 type; (InterPro:IPR008290); contains InterPro domain Phosphoinositide 3-kinase accessory region PIK; (InterPro:IPR001263); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain Phosphoinositide 3-kinase, C2; (InterPro:IPR002420); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.399710321116531 3.30040412479745 0.00717240174230284 1 3.09486556228285 16.2010416058153 0.399710321116531 0.14845248315246
AT1G10690_at 6.05340590088507 6.74150723133623 6.55484425173605 6.58305241414392 7.22377381127475 7.21643748929909 4.88701786020243 5.293525042311 5.4924774794431 4.94857979432419 4.68984601346336 4.15203772276953 4.33611348550147 4.68080255610791 3.78865506625416 4.79941756562846 4.97088994908696 4.42440100274261 4.1421456103052 0.269573787506202 0.272764381138113 0.271134040475905 0.271243690256372 0.279523703850516 0.274078287937679 0.264911851239249 0.267907350964071 0.270023110834837 0.263146185297884 0.267369430000637 0.271377895725942 0.263146185297884 0.263146185297884 0.276548547474381 0.264251341185829 0.269172197476112 0.275984785723908 0.266054606376551 1 1 - 3550276 3550525 3550386 3549993 3550633 - gene protein_coding_gene FALSE TRUE AT1G10690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40460.1); similar to hypothetical protein MtrDRAFT_AC146560g4v1 [Medicago truncatula] (GB:ABE87926.1) 0.384932887549958 3.29988416014772 0.00717898585722016 1 3.09405569437707 10.9898645242578 0.384932887549958 0.138398410577943
AT4G11060_at 4.15470643852598 4.00681607117439 3.76146150818371 3.67179440743985 3.39157430132507 2.86578739608918 4.02995639719711 4.28532884512809 3.35005026246128 4.08199879491135 3.49425623449002 3.71487354920923 3.07697197017618 3.71549919179674 4.22102673848091 3.38999910261537 3.55293238988447 3.72646134246378 3.35625257414057 0.228703901488041 0.230989890430214 0.225595372192214 0.234358557703577 0.234240298386784 0.233039191149427 0.219540186623729 0.232547982272339 0.228872406842672 0.221850321672797 0.222735405951406 0.222163141452749 0.219978514274212 0.219540186623729 0.227476704687415 0.219540186623729 0.223871688924582 0.219540186623729 0.227382911576089 4 4|0 -|/ 6755058 6755949 6755522.143 6754583 6756528 - gene protein_coding_gene FALSE TRUE AT4G11060.1 MTSSB (MITOCHONDRIALLY TARGETED SINGLE-STRANDED DNA BINDING PROTEIN); single-stranded DNA binding Identical to Single-stranded DNA-binding protein, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q84J78;GB:O82512;GB:Q9T011); similar to single-strand-binding family protein [Arabidopsis thaliana] (TAIR:AT3G18580.1); similar to Single-stranded DNA binding [Medicago truncatula] (GB:ABD28355.1); similar to Os05g0509700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056004.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Single-stranded DNA binding; (InterPro:IPR010913); contains InterPro domain Single-strand binding protein/Primosomal replication protein n; (InterPro:IPR000424) -0.340572756847544 -3.29909987819934 0.00718892859219685 1 3.09283410789075 7.37472972499658 -0.340572756847544 0.105489374536466
AT2G32380_at 4.43779612474321 4.18484370860695 3.02202327028977 2.56282664560585 3.06221383753726 2.26862132372304 3.71086027799847 2.63215087458454 3.72255392216497 2.38384648285964 2.64653190344140 4.02111060476111 1.89513783321336 2.70081757532119 3.57407209067306 2.08952741252722 1.80519241553555 2.62947699493114 2.25651222174071 0.235872688499997 0.229633493670882 0.234368993578721 0.235466519840886 0.228725900114056 0.240438628125764 0.241743785102995 0.227201286935266 0.247499861020805 0.232324456162994 0.228999641526184 0.229712840374499 0.232250085665204 0.231355068501011 0.227771674807516 0.234022270199000 0.234755601471035 0.233003066699372 0.236173956014245 2 2|0 -|/ 13753886 13754768 13754565.7 13753688 13754868 - gene protein_coding_gene FALSE TRUE AT2G32380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05210.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57387.1); similar to Os07g0458700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059570.1) -0.564947832824456 -3.29845115595813 0.00719716338760161 1 3.091823637606 5.96410245591394 -0.564947832824456 0.248877006308764
AT2G31260_at 5.20758540419752 5.51295677842047 5.40541070996157 5.45829338096721 5.43868995303369 5.5858415181527 4.69829874165255 5.26969786467544 5.15300056154962 4.68648201029596 5.07418691047694 5.27201084278245 5.14862082084325 5.26200974969578 5.3030278715542 5.04169380050327 5.54772398701598 5.33492900695468 4.68617007262469 0.213638864109090 0.213294095132442 0.215955666916679 0.215788493466847 0.215419955375684 0.214700898348342 0.209039573749407 0.208469593235015 0.210491032694283 0.213225837897216 0.212239364818534 0.213792562328346 0.213137350793094 0.211990647162581 0.225380776286415 0.21366228990284 0.214244408139882 0.208469593235015 0.213095199874825 2 2 - 13329371 13329936 13329705.455 13329098 13334477 - gene protein_coding_gene FALSE TRUE AT2G31260.1 APG9 (AUTOPHAGY 9) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence. similar to Autophagy protein Apg9 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65924.1); similar to autophagy protein 9 [Glycine max] (GB:CAJ30206.1); similar to autophagy protein 9 [Saccharum officinarum] (GB:CAJ30211.1); contains InterPro domain Autophagy protein Apg9; (InterPro:IPR007241) 0.353032676098596 3.29831452906154 0.00719889893838341 1 3.09161081980799 10.3670515881585 0.353032676098596 0.115337888250221
AT2G33690_at 1.6672352366506 1.93581030933862 1.77699183213411 1.85545837608619 1.51921609293898 1.61992276234852 1.57299020876799 1.6375894076971 2.08415512664221 2.33724516177875 1.57015544075427 1.41904285873072 2.05773014802731 1.48300295291643 1.55075715167987 1.42325821252889 1.47016647901495 1.88589180427744 2.09310674532442 0.175080676299893 0.173843466133546 0.176623261992158 0.167655445112938 0.167655445112938 0.169414792709920 0.174801908945750 0.172744077277643 0.168514548367122 0.170066655237539 0.168287968815033 0.178800535213443 0.176194713709793 0.182055557691059 0.180205668592165 0.171893817889219 0.168032249889187 0.175234596659443 0.179262343892068 2 2 + 14259287 14259461 14259357.273 14259275 14259664 + gene protein_coding_gene FALSE TRUE AT2G33690.1 late embryogenesis abundant protein, putative / LEA protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23120.1); similar to seed maturation protein PM35 [Glycine max] (GB:AAD51623.1) -0.287255369163593 -3.29817354193128 0.00720069032430506 1 3.09139120901567 3.58765326603178 -0.287255369163593 0.052662231150972
AT4G27430_at 7.81027055119921 8.34229255088065 6.62681419296345 7.20096810064603 8.0557917020597 7.87614668150896 9.32240360276997 9.34238148065486 9.03840729892914 9.14765360163518 9.95815540234921 9.95563875297114 9.709241964585 9.61935567854593 9.6491390468754 9.72944400910973 8.94458061529981 9.7331413705636 9.32020265549852 0.196306895016473 0.172305478982466 0.205750438465416 0.200366161614384 0.172039885816593 0.191491301095914 0.172029032473534 0.172889983673188 0.188658685155672 0.176001272814650 0.168894494184161 0.169000956507033 0.173027179353690 0.168637413321676 0.168946467813985 0.169762283934037 0.183581077339770 0.173502045138648 0.174637629777066 4 4 + 13722209 13722704 13722477.636 13718685 13722984 + gene protein_coding_gene FALSE TRUE AT4G27430.1 CIP7 (COP1-INTERACTING PROTEIN 7) Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. similar to disease resistance protein (TIR class), putative [Arabidopsis thaliana] (TAIR:AT1G61100.1); similar to Os03g0861100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051978.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44760.1) -0.385412145365891 -3.29628036124738 0.00722478923679145 1 3.08844214423435 17.4876794196979 -0.385412145365891 0.139023501263382
AT1G28140_at 9.7511228710368 9.99340537397855 10.2758146784709 10.3278690877179 10.6606709590945 10.2972196843991 10.2549644397610 9.94953329147478 9.17956876079312 9.37958413788082 9.5860138931208 9.24079586636438 9.80959920908565 9.50090630623288 9.3128567329194 9.44314934533583 9.75892508808394 9.39968120245304 9.21975333990056 0.184953053751878 0.179796142747595 0.183469981828244 0.182139464253171 0.1856375887011 0.179559270147930 0.182387113330642 0.183264047897289 0.215167783744677 0.177789362202280 0.181062464486605 0.176045434775619 0.190603537623427 0.197007050389209 0.185936112899302 0.184197129674819 0.195800011309691 0.207111922287664 0.183108814905762 1 1|0 -|/ 9833076 9833953 9833576.625 9832803 9834414 - gene protein_coding_gene FALSE TRUE AT1G28140.1 similar to Os03g0850600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051907.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55773.1) 0.324996325474579 3.2958542168345 0.0072302251057347 1 3.0877782948254 19.5718882323955 0.324996325474579 0.0926764661617931
AT1G55190_at 4.41904782479776 4.67345223373498 4.17661315633723 3.96831546076798 4.75524674415812 4.63094644728736 4.64142251893859 4.78176583025785 4.10010952674786 4.05562758248596 5.49598610212067 5.61004461455406 5.38044252121176 5.07551156462786 4.96427613653509 4.69177779771904 4.54361896046053 3.84374041964606 4.17394024092459 0.291154178353273 0.286549859678854 0.290190902090233 0.296140608628217 0.287367905494411 0.300058670526855 0.285678073538415 0.287859973870679 0.310056199120015 0.297397675619097 0.285678073538415 0.29134701865693 0.285678073538415 0.288444510620551 0.287564015142957 0.289282038969739 0.298261783507552 0.293472681221849 0.296140258685633 1 1 + 20592151 20592658 20592442.455 20592064 20592866 + gene protein_coding_gene FALSE TRUE AT1G55190.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G13720.1); similar to prenylated rab acceptor family protein [Thlaspi caerulescens] (GB:AAY18432.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.297320332380979 3.29478044320919 0.00724394060205383 1 3.08610551515041 9.03613488436607 0.297320332380979 0.0654998396577689
AT1G78050_at 2.07290527340173 2.11607950698176 2.01902014975155 2.22636813178838 1.75649397611958 2.27203774129413 3.40415162847140 3.30767279162489 2.56332593568725 2.92615290540433 2.65496615339753 2.81078033382432 3.11667689780193 2.65476064224261 2.52521724784365 2.50677322104366 2.63749875037022 2.68681814952779 2.62252626596993 0.242924874699134 0.243309260715918 0.242836941349698 0.246279599506585 0.248617162506786 0.242076195766701 0.24344793671936 0.253568274389399 0.239575584384786 0.237454799200864 0.241783894104683 0.239218615803272 0.250235922409747 0.242533316157860 0.239358146130913 0.239251231896391 0.252635655046606 0.247776810980787 0.243043954678971 1 1|0 +|/ 29353487 29354313 29354005.2 29352475 29354649 + gene protein_coding_gene FALSE TRUE AT1G78050.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT1G22170.1); similar to Os02g0751800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048137.1); similar to putative phosphoglycerate mutase [Oryza sativa (japonica cultivar-group)] (GB:BAD38179.1); contains InterPro domain Phosphoglycerate/bisphosphoglycerate mutase; (InterPro:IPR001345); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain Phosphoglycerate mutase 1; (InterPro:IPR005952) -0.330768789114458 -3.29315236728917 0.00726478695684154 1 3.08356907602344 5.09843521335933 -0.330768789114458 0.0978869659099327
AT4G24050_at 3.86154681469124 3.86340644862217 4.34416294680892 4.55102846691963 4.94414455891496 5.12773577880327 4.56890970258768 4.88687335310999 3.65201090869876 3.95245156848605 3.77349745297979 3.3339555187708 3.90080569594882 3.9987166027186 3.44443038687852 4.07793494707296 4.12635175826104 4.4332137045764 3.57038219908648 0.228926947979006 0.218491796896975 0.225024038874132 0.231253585919343 0.222351548435458 0.23965187534551 0.217676439866297 0.217465204292699 0.225722680883837 0.214539492886871 0.225467490344602 0.223429894250365 0.216952449085491 0.218304636486819 0.235440555145110 0.217812149647806 0.223957741446402 0.214938377727816 0.215449567331646 4 0|4 /|+ 12498183 12499610 12498880.571 12497065 12500138 + gene protein_coding_gene FALSE TRUE AT4G24050.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT1G64590.1); similar to Os06g0129100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056678.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE79697.1); similar to Os03g0115700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048754.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.303874445543017 3.29184897806241 0.00728152003827148 1 3.08153835796082 8.32400675071955 0.303874445543017 0.0729304630693844
AT1G20970_at 2.67291097520423 2.86189089396972 2.69277622334165 2.99583659329167 2.80850629083836 2.71107774922516 3.14263048383146 3.13830890909107 3.49408406483673 3.59063322074221 3.20738792942524 2.99944830837534 3.04444292809634 3.16291097838181 3.23858239739338 2.88482126770743 2.9578987296428 3.64529768213939 3.66176312320649 0.207491641991745 0.207752032225014 0.204584617137658 0.200597767446401 0.204012809135098 0.204592866158882 0.212478765145270 0.214120607515503 0.218997713826176 0.204723469980114 0.200597767446401 0.200597767446401 0.209168331142373 0.207322292161456 0.206508093143915 0.204154989605286 0.205704841179682 0.205147079208532 0.20934109926306 1 1|0 +|/ 7319079 7319825 7319585.6 7314327 7319869 + gene protein_coding_gene FALSE TRUE AT1G20970.1 adhesin-related similar to PPI1 (PROTON PUMP INTERACTOR 1) [Arabidopsis thaliana] (TAIR:AT4G27500.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE79670.1) -0.295723729983253 -3.29087817020426 0.0072940089439366 1 3.08002574203031 6.24037172180268 -0.295723729983253 0.0640699677352644
AT2G29500_at 2.66845839498152 2.67608439630072 1.93609268549676 1.86025851887945 2.27684960886599 2.44776635623231 2.5602820545772 2.4868467732973 2.12944475189229 2.76174911955172 2.16206624813874 2.12095986087308 2.09392687032917 2.32132551199730 2.51569033249209 2.32132051748997 2.42526049990885 2.78962189452350 2.38955097196005 0.207166843810797 0.206400562798363 0.212725176092134 0.206165335942866 0.214924623309830 0.208370693725231 0.206815968343462 0.209189521891454 0.226652063591479 0.206165335942866 0.206165335942866 0.209015350125556 0.208959251208691 0.213618527585255 0.208044552014500 0.211767872262017 0.2067714729305 0.218077565987722 0.2087562069864 2 2 - 12640361 12640791 12640592.182 12640168 12640882 - gene protein_coding_gene FALSE TRUE AT2G29500.1 17.6 kDa class I small heat shock protein (HSP17.6B-CI) similar to 17.8 kDa class I heat shock protein (HSP17.8-CI) [Arabidopsis thaliana] (TAIR:AT1G07400.1); similar to 17.5 kDa class I heat shock protein [Carica papaya] (GB:AAR25848.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -0.275409796626411 -3.28918851896572 0.00731579751178871 1 3.0773929555555 4.74942305596413 -0.275409796626411 0.0347896916448064
AT3G19620_at 1.57444122964894 2.24670487766969 1.30433713126259 1.47301507728754 1.41942534204841 1.76444413196427 2.68571255491421 2.48532436980356 1.98170568709808 1.92134953499145 1.57952319054134 2.26559335520855 1.88080949204599 1.89828642685047 2.57450406713619 2.15194556622318 1.86966765837503 2.49455275798181 2.39354133802827 0.203428396669471 0.204901664335191 0.210817458162508 0.21390321944876 0.204411331956121 0.207451087736543 0.201790430679681 0.211888811110486 0.217663501672413 0.206362133141829 0.201140678198318 0.204210059452191 0.208636925080803 0.210543280036152 0.208431672051013 0.203501702092004 0.205807527614335 0.202243618084853 0.210563161211799 3 3 - 6815651 6816136 6815899.091 6815619 6818314 - gene protein_coding_gene FALSE TRUE AT3G19620.1 glycosyl hydrolase family 3 protein similar to XYL4 (beta-xylosidase 4), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G64570.1); similar to BXL2 (BETA-XYLOSIDASE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G02640.1); similar to BXL3 (BETA-XYLOSIDASE 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G09730.1); similar to alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I [Hordeum vulgare] (GB:AAK38481.1); similar to alpha-L-arabinofuranosidase [Raphanus sativus] (GB:BAE44362.1); similar to LEXYL1 [Solanum lycopersicum] (GB:BAC98298.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.38362277155617 -3.28864903991769 0.00732276823390087 1 3.07655231077969 3.96328850649219 -0.38362277155617 0.138398735153872
AT1G04860_at 7.61008746200839 7.56513330713052 7.18981896639483 7.49943093889516 7.64921099899094 7.4320245878519 7.80628273053611 8.06013305124604 7.35822758131763 7.54123585195313 7.24475922655586 6.85935326612714 7.29331546868305 7.33365230759731 6.88388227006045 7.44108644416547 7.01236309366198 7.38748501105298 7.55148741858974 0.213907359868140 0.213564432368475 0.217766859307653 0.211777776308848 0.221009668504627 0.218509961074831 0.218919720038116 0.215312099128225 0.221054118265633 0.215798346207868 0.211028692157132 0.217638068204937 0.217356689824779 0.214404126908164 0.216606204916702 0.214310835539532 0.226873509000488 0.217290292095582 0.213754827620774 1 1 - 1369311 1369901 1369557.091 1369053 1373097 - gene protein_coding_gene FALSE TRUE AT1G04860.1 UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2); ubiquitin-specific protease Encodes a ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15) (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) (AtUBP2) (UBP2) [Arabidopsis Thaliana] (GB:Q8W4N3;GB:Q9MAT4); similar to ubiquitin-specific protease 1, putative (UBP1) [Arabidopsis thaliana] (TAIR:AT2G32780.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type [Medicago truncatula] (GB:ABE89159.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.309725456331261 -3.28818570733612 0.00732876045987877 1 3.07583030700192 14.9343339653525 -0.309725456331261 0.0792073241881798
AT1G76660_at 3.39102180043215 4.00230974612854 3.21268993251635 3.32388026570334 4.75264580311679 4.10735616159143 3.63917710752964 3.10699287269531 3.53508440160172 3.31668476650799 4.36597731847803 4.56593997026033 3.37000907215882 4.2599617918068 3.92498109145283 4.0903311871719 3.58268113185787 4.04221603410381 3.48429307787462 0.204860145992131 0.201522477172539 0.201747080251687 0.200096998810767 0.199765777911571 0.204967801118800 0.204885622730514 0.205265596985323 0.21353319949539 0.203608914433075 0.205750598805429 0.205314829373824 0.202456009165352 0.20412590816212 0.222576093268844 0.201711459958803 0.209325718644056 0.20434268017859 0.199765777911571 1 1 - 28774161 28774719 28774480.364 28773773 28776303 - gene protein_coding_gene FALSE TRUE AT1G76660.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G52430.1); similar to Os01g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041759.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95206.1); similar to Os03g0270700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049686.1) 0.447087888351046 3.28543942697335 0.00736438061384048 1 3.07155054878935 7.42731735204223 0.447087888351046 0.180313910134304
AT3G08930_at 9.21245634452548 9.18503094393185 9.35778236390418 9.41503150729612 9.46297821504935 9.37823544879442 9.28048270245674 9.27472832909905 9.13448535566427 8.833718620056 9.46239461596316 9.47450564603193 9.20597447122427 9.13173372912658 9.6091034939396 9.18823389235633 9.15219220520183 9.44816670638172 8.91758227329956 0.101344041753279 0.100110947688307 0.104441268143389 0.10104592961789 0.100222433223433 0.104369860778488 0.102216376831944 0.0989717930726885 0.104608933995921 0.101332855143126 0.098552922922424 0.0980155183756863 0.0973368771226053 0.101043548366923 0.101277611766873 0.100451569159105 0.101076732508292 0.0997177232986865 0.102798453295642 3 3|0 +|/ 2715674 2716895 2716402.6 2713410 2717318 + gene protein_coding_gene FALSE TRUE AT3G08930.1 similar to LMBR1 integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G01460.1); similar to LMBR1 integral membrane family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44783.1); similar to Os06g0128200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056670.1); contains InterPro domain LMBR1-like conserved region; (InterPro:IPR006876) 0.268720824556318 3.28542897722771 0.00736451648717726 1 3.07153426318667 18.4688241542329 0.268720824556318 0.0183503776367707
AT4G14290_at 1.31301154050909 1.45372611801622 1.86129250307125 2.05031097324403 1.55333058008842 1.63793551138195 1.50225895856997 1.00732365280739 1.44462149810766 1.83354146576697 1.79451839319028 1.86283278310853 1.77154901664317 1.67308535885362 1.48767368440602 1.93083541073530 1.79292137859360 1.82448549740072 1.42689509473792 0.193661218466509 0.19739177019743 0.193199686618404 0.193199686618404 0.195046768263780 0.199332764787375 0.195235937407764 0.197271658431716 0.207695735155187 0.200706189692841 0.197339627272796 0.198832453414827 0.201571482659433 0.205603631733992 0.195049937608422 0.197153476673125 0.21560367146591 0.204930244584870 0.205767668044251 4 4|0 -|/ 8226075 8227430 8226893.667 8225476 8230277 - gene protein_coding_gene FALSE TRUE AT4G14290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23540.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.327761164316484 3.28533724687264 0.00736570932542199 1 3.07139130400006 3.21519391799633 0.327761164316484 0.0959864702014794
AT3G50650_at 3.85232300938024 4.19919036624468 3.39381038943149 4.1515550095348 3.88841865787056 3.28578200497877 2.22087341105901 2.20842255534063 2.676925625892 2.02225212907940 3.20484058112082 2.56022987129602 2.86982746070508 3.06709968555710 1.99385574298350 2.93137847320431 1.72673714956120 2.73423605574746 2.22787947024049 0.241629555156391 0.230967440549967 0.234656481843364 0.233353530421315 0.224884459308051 0.233335560054771 0.223121509288175 0.221453063753604 0.221453063753604 0.229752694660604 0.234369777353474 0.232813279897809 0.232477476066114 0.226525970688669 0.229630144847937 0.222023526700148 0.221697729327953 0.225912099608480 0.227342814108666 3 3 - 18817482 18818028 18817760.818 18817239 18819191 - gene protein_coding_gene FALSE TRUE AT3G50650.1 scarecrow-like transcription factor 7 (SCL7) similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G66770.1); similar to Os03g0723000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051115.1); similar to putative chitin-inducible (GB:ABD84026.1); similar to Os07g0583600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060115.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.443347866199537 3.28525148123912 0.00736682477820537 1 3.07125764019530 5.87256927677631 0.443347866199537 0.177987359579849
AT1G70700_at 7.57401033898438 7.65677404018246 6.854223562627 6.65802629528916 5.9832031858676 5.57524507659581 7.34554591938448 7.43005035868544 3.66433052720886 5.22001458502052 4.71859495096342 4.60722236497043 5.71193923083555 5.28395177133505 4.10731411814869 7.20779507479506 5.77707825728915 3.56020810527611 4.6456493967473 0.235699196380057 0.237504519585190 0.23480697573985 0.236788240134613 0.231401793268986 0.246615474996486 0.234435742029674 0.249044938152857 0.245818192688508 0.237625051220011 0.232701849094047 0.242665724284481 0.233652060980414 0.231401793268986 0.244649329903642 0.236596228136343 0.246468469729187 0.240882168440354 0.240082753701897 1 1|0 +|/ 26659524 26660435 26659968.667 26658431 26660726 + gene protein_coding_gene FALSE TRUE AT1G70700.1|AT1G70700.2|AT1G70700.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAE46411.1); contains InterPro domain ZIM; (InterPro:IPR010399) -0.311077909835755 -3.28340313936478 0.00739090590155946 1 3.06837693103439 11.7005154241323 -0.311077909835755 0.0809692456562682
AT1G17110_at 7.1659535269544 7.30366731060247 5.80646063451616 6.62737973683542 7.16133279575072 7.03682155531285 7.13282318872367 7.17780798751302 6.99429493208405 7.17842424717823 6.97574049972557 7.16265486162068 6.82417878244607 7.09972494510487 7.00906945388414 7.22408802745679 6.70305239832836 6.71085416324181 7.46949793844776 0.151364943376522 0.152147195439836 0.166325787825414 0.151054933460138 0.140483572436449 0.149597992989179 0.152624927402060 0.140483572436449 0.179353858397071 0.150301659344597 0.147670492061121 0.151151932063890 0.144487007417720 0.150777524183415 0.151884684377220 0.147880013838955 0.148130233024903 0.154090673362035 0.142176287490174 1 0|1 /|- 5845890 5846189 5846054.3 5845668 5850882 - gene protein_coding_gene FALSE TRUE AT1G17110.1 UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT5G65450.1); similar to Os02g0244300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046415.1); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAD28270.1); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.39373315196929 -3.28259447268324 0.0074014668487365 1 3.06711652811864 14.0154022240491 -0.39373315196929 0.145859515285895
AT4G32760_at 9.48794363279969 9.4253843198099 9.67189962275848 9.61502789375336 9.9408704825518 9.74172733545242 9.57733860138646 9.37012134219566 9.31482604909078 8.81071756702838 9.44608870140344 9.03576663197967 9.39462131258215 9.34848363144697 9.06032492440852 9.35791664522614 9.40038754668943 9.24731326691926 8.85357099018447 0.0990173911337374 0.0967766376666554 0.105000503775780 0.101591399197975 0.105390750373472 0.101763663959253 0.107296983371998 0.101688857061027 0.103425443511574 0.113657910789766 0.101995706733180 0.0987254404544509 0.102840522017884 0.100209589248833 0.107210186943045 0.0967766376666554 0.107484085580430 0.106778135930348 0.110218324255828 4 4 + 15803261 15803810 15803536.364 15799144 15804180 + gene protein_coding_gene FALSE TRUE AT4G32760.1 protein transporter similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08790.1); similar to VHS and GAT domain protein [Glycine max] (GB:ABB90835.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.285254495030914 3.28201728966179 0.0074090140997621 1 3.06621689543933 18.7434896711801 0.285254495030914 0.0518428122420526
AT2G31970_at 5.28714752783764 4.74642360647297 5.09805013108550 4.96045706515107 5.20494317779477 5.03781471593149 5.05180092562176 4.51114704306587 4.46847167839663 4.48940388538568 3.36166168114617 3.54617815951398 3.48202022410923 3.15080584389936 3.77214036499878 4.21035242204337 3.82680692424173 3.52299859959303 4.68703179249892 0.214560229972461 0.210953284580326 0.211886974740028 0.211480004595619 0.212106765958947 0.221300993800891 0.209891926533044 0.212632476412779 0.22381071518849 0.214909907506856 0.223245918266378 0.208218854947300 0.218425284232080 0.216377470647825 0.223838610123473 0.207623230905069 0.220673607055724 0.207623230905069 0.213188633817191 2 0|2 /|+ 13614891 13615853 13615396 13607568 13616146 + gene protein_coding_gene FALSE TRUE AT2G31970.1 RAD50; ATP binding / ATPase/ nuclease/ zinc ion binding Identical to DNA repair protein RAD50 (EC 3.6.-.-) (AtRAD50) (RAD50) [Arabidopsis Thaliana] (GB:Q9SL02;GB:Q9M6P9); similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to DNA recombination/repair protein [Dictyostelium discoideum AX4] (GB:XP_629462.1); similar to Myosin class II heavy chain (ISS) [Ostreococcus tauri] (GB:CAL50040.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE89716.1); contains InterPro domain Zinc hook, Rad50; (InterPro:IPR013134); contains InterPro domain Rad50 zinc hook; (InterPro:IPR007517); contains InterPro domain SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain Recombination/repair protein Rad50; (InterPro:IPR004584); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.381497713954692 -3.28110907546244 0.00742090581328436 1 3.06480125613138 9.06593451388861 -0.381497713954692 0.137527049193521
AT1G54130_at 10.7833772455853 10.8082777938303 10.7636307695521 10.7892785308127 11.0934116872922 10.9494593382972 10.6503464500214 10.6721244455947 10.9857382201498 10.8802588123701 11.5205293622253 11.1802852133685 11.3788788618414 11.3567600839898 11.1692543324559 11.4372338853636 11.0127416452747 11.1387084281488 10.8432364438838 0.0686935036187043 0.0675381643291736 0.0686130394204871 0.0676567961193368 0.0674488091703136 0.074401349114298 0.06671853708204 0.0675218655974738 0.0723222504591681 0.0694594530216119 0.068543396618273 0.0672454526923644 0.0690251195475270 0.0686396011232532 0.0722223236198611 0.0674265571812069 0.0712068161125687 0.0722614436305113 0.0689491258017099 1 1 + 20216808 20217358 20217094.091 20214543 20217609 + gene protein_coding_gene FALSE TRUE AT1G54130.1 RSH3 (RELA/SPOT HOMOLOG 3); catalytic similar to RSH2 (RELA-SPOT HOMOLOG), catalytic [Arabidopsis thaliana] (TAIR:AT3G14050.1); similar to RelA-SpoT like protein PsRSH1 [Pisum sativum] (GB:BAC97801.1); similar to RSH2 [Nicotiana tabacum] (GB:AAQ23899.1); similar to RSH-like protein [Capsicum annuum] (GB:AAK82651.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) 0.270817374423115 3.28088344841734 0.00742386308109809 1 3.06444956199888 21.9024266836489 0.270817374423115 0.0259434308269008
AT1G78750_at 1.05974424957091 1.68999231469092 1.63891009507309 1.93644454976894 2.65193870541968 1.88864507363515 1.80566237376720 1.62769929830513 1.72881389332084 1.98326847919488 2.00191346901703 2.26056383735461 2.02147198682435 2.17299827771447 1.82860434101258 2.33261767471902 2.39871747193509 2.03697761353735 1.4433655731116 0.223201159696498 0.223609935173901 0.225892509445635 0.226987688456071 0.218755525832882 0.222593912454699 0.216665928619138 0.221927388279628 0.226018165135135 0.229157024291941 0.219044743545318 0.216665928619138 0.216665928619138 0.216665928619138 0.216665928619138 0.216665928619138 0.227506958276497 0.220900052415803 0.221625008590704 1 1|0 -|/ 29618017 29618768 29618441.1 29618015 29619588 - gene protein_coding_gene FALSE TRUE AT1G78750.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G69630.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE78248.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.448230241181272 3.27985163789576 0.00743740222612877 1 3.06284119708249 3.71248744880726 0.448230241181272 0.181503523112746
AT1G28410_at 5.15869106492367 4.93781988666199 4.51116260577516 4.24015091886803 4.69946233001244 4.31159610347923 5.02569130363394 4.78615796764219 4.6584313904285 5.35765072035643 4.84039756675638 5.22582520390102 4.43290115231338 5.00246959473276 4.93515269532494 4.57715722210303 4.76264768192052 4.88548006398949 4.85973910977514 0.221527788992672 0.214794790893774 0.213645688101694 0.212572771770355 0.209948379452021 0.224402706081959 0.210504193637724 0.223469821188163 0.219511471298548 0.211606766406372 0.211263933349467 0.212061928718215 0.211492589531149 0.215580947322026 0.218388156050384 0.218398618663679 0.215515060219463 0.217238441979838 0.213826262399948 1 1|0 -|/ 9976368 9977932 9977099.444 9976168 9979253 - gene protein_coding_gene FALSE TRUE AT1G28410.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.2); similar to Os02g0305600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046635.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72581.1); similar to Os08g0519400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062259.1); contains domain no description (G3D.1.10.274.10); contains domain E set domains (SSF81296) -0.331175121035782 -3.2791814287805 0.00744621002047878 1 3.06179645427585 9.60452200819969 -0.331175121035782 0.099419541465477
AT2G31800_at 9.62327621655535 9.52359055260211 9.6704634887623 9.50944115982972 10.2599271059458 9.72258025585892 9.0999547358131 8.40438515760559 9.58121327314197 9.11686734469304 9.68676458016813 9.44211800296012 9.26820650163379 9.56332661804701 9.41300585713688 9.60499539841221 9.24160254308575 9.7407102148775 9.22477976779189 0.105711746537271 0.104129167150366 0.104100540235627 0.110032933937474 0.100905874248490 0.108417143908503 0.101504895496579 0.114569883187636 0.107972380449656 0.105492898469428 0.108002650544093 0.104359449375986 0.100178936552667 0.107874852358425 0.106083488792817 0.104408988435891 0.11239957940989 0.101532276261569 0.102879303424267 2 0|2 /|- 13527902 13528844 13528406.625 13527402 13530785 - gene protein_coding_gene FALSE TRUE AT2G31800.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative (APK1) [Arabidopsis thaliana] (TAIR:AT2G43850.1); similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G59830.1); similar to ankyrin protein kinase [Brassica napus] (GB:AAT94403.1); similar to ankyrin protein kinase [Brassica rapa] (GB:AAT94402.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06433.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.407636211476517 3.27779549059789 0.0074644575824531 1 3.05963592432126 18.8780580056628 0.407636211476517 0.155597614060824
AT4G00110_at 4.16001997685872 4.43739524085561 4.62630032373806 4.52604899419319 4.50330818879684 4.78535117319164 4.85113367844018 5.10235032987831 4.44051900722655 3.65872561557039 4.79087725109219 4.88789766649558 4.80784719447698 4.80041783597632 5.19400996344935 4.33045226701219 4.30658437843179 4.11617142159877 3.90577237959922 0.204612517409875 0.204771610834885 0.206981217941099 0.201656818617429 0.214046495321732 0.203148150760432 0.201735166353217 0.208065448888417 0.207891931121637 0.209744397789574 0.205988033854075 0.205585847164452 0.203054301333871 0.207346910025629 0.201757194767175 0.200545576776159 0.211053852863255 0.204560281265029 0.205239042326431 4 4 - 38763 39266 38991.273 38504 40189 - gene protein_coding_gene FALSE TRUE AT4G00110.1 GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); catalytic Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase. similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5), catalytic [Arabidopsis thaliana] (TAIR:AT4G12250.1); similar to GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4), catalytic [Arabidopsis thaliana] (TAIR:AT2G45310.1); similar to NAD-dependent epimerase/dehydratase; TonB box, N-terminal [Medicago truncatula] (GB:ABE85249.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) 0.312568638328158 3.27763817257522 0.00746653174530486 1 3.05939067493753 8.95196577896842 0.312568638328158 0.0829301019893186
AT1G22460_at 1.92507896510454 1.97865007258244 1.85428365745789 2.28383580207371 1.26850871127884 1.78550606990404 1.77428094615050 2.17036071091553 2.24686159865845 2.08583047843178 1.76118466138758 1.24902155559213 1.27932004121312 1.75986533480089 1.49727681406315 1.71443236931784 1.55171780090754 1.80218382136092 2.17223229687858 0.219798841804937 0.225702529621715 0.219405111764453 0.223919166836828 0.215192155007239 0.227552179767438 0.215192155007239 0.224217004268576 0.216875204802601 0.217500554351678 0.219929217580111 0.220590351868906 0.230605879420762 0.220718320060137 0.218633851458357 0.215192155007239 0.216311739872435 0.223943251814336 0.218616633979386 1 1|0 -|/ 7927540 7928252 7927991.778 7927417 7930646 - gene protein_coding_gene FALSE TRUE AT1G22460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64600.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37235.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.377745969167751 -3.27562958462535 0.00749306572820244 1 3.05625927524636 3.75265482917677 -0.377745969167751 0.135331663480329
AT2G44350_at 10.0778404421019 10.0372908607671 10.5711921111453 10.5283086438043 9.8419797172954 9.73300701837271 10.0883654874475 10.0976337959925 9.4638523491913 9.72838175742445 9.91208997448024 10.0173026535247 9.92757576760613 9.96326462219363 10.0736637018863 9.90920905957548 9.91449864310436 9.85364585273163 9.31430203170477 0.0722973484635681 0.0719428710731339 0.0723801335290986 0.0714936404586083 0.0707960506564398 0.0745350415758287 0.0711806126981791 0.0761923583876157 0.0808091169984303 0.0714011959508009 0.070943965535325 0.0699973331653896 0.0733076435403563 0.0728239593853853 0.0754512769606766 0.0713127596591695 0.0753216817059896 0.0745817534454073 0.0710428664920478 2 2|0 +|/ 18326104 18327550 18326929.333 18323354 18327865 + gene protein_coding_gene FALSE TRUE AT2G44350.1|AT2G44350.2 ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. Identical to Citrate synthase 4, mitochondrial precursor (EC 2.3.3.1) (CSY4) [Arabidopsis Thaliana] (GB:P20115;GB:O64869;GB:Q8LE36;GB:Q94EY6); similar to CSY5 (CITRATE SYNTHASE 5), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G60100.1); similar to Citrate synthase, mitochondrial precursor (GB:O80433); similar to mitochondrial citrate synthase precursor [Citrus junos] (GB:AAR88248.1); similar to Citrate synthase, mitochondrial precursor (GB:P49298); contains InterPro domain Citrate synthase; (InterPro:IPR002020); contains InterPro domain Citrate synthase, eukaryotic; (InterPro:IPR010109) 0.26878339884575 3.27489560867211 0.00750278571565222 1 3.05511494210503 19.8462447581965 0.26878339884575 0.0215063233295115
AT2G20340_at 6.96129040595785 7.1983591529312 7.32561930339635 7.57355989349132 7.30396210755361 7.64325606741217 8.84403318350134 8.86288430043497 6.61039855471464 7.58519640331587 7.05263929801145 6.7436738995265 7.7183177082666 7.5244606069778 6.63628338936787 7.39249465182923 6.740478659241 6.42587449023542 7.2547993734003 0.184796778391663 0.183529416475318 0.188441588632939 0.191535926719992 0.18660883183471 0.192695644068461 0.202128880757813 0.183534829557833 0.197171125816294 0.194980928046369 0.19793371824316 0.188684037105658 0.186096631635494 0.186296201500225 0.188727220396467 0.193979653843219 0.208931742418741 0.189716992098191 0.194025307791404 2 2|0 +|/ 8788553 8789318 8788979.333 8786816 8789853 + gene protein_coding_gene FALSE TRUE AT2G20340.1 tyrosine decarboxylase, putative Identical to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) [Arabidopsis Thaliana] (GB:Q8RY79;GB:Q9SK68;GB:Q9SMY2;GB:Q9SMY3); similar to tyrosine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT4G28680.1); similar to Os07g0437500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059509.1); similar to tyrosine/dopa decarboxylase [Thalictrum flavum subsp. glaucum] (GB:AAG60665.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129); contains InterPro domain Aromatic-L-amino-acid decarboxylase; (InterPro:IPR010977) -0.312948011810631 -3.27467358745979 0.00750572845744782 1 3.0547687851139 14.8038251927060 -0.312948011810631 0.0835608350676277
AT1G61570_at 7.93514309724098 8.18807678003134 7.53574832906268 7.9365025337001 7.24664123062957 6.45142149127229 7.57444232019833 8.02622706703943 6.18400467063956 6.14813643087282 5.92513268226071 6.37871931004663 5.79879579931085 5.98029680190422 6.41652863874436 5.85531752694658 5.89814380043015 5.70905584667457 6.39249543664868 0.224854828866030 0.225856153203583 0.217886434357905 0.215395107036737 0.222798296412709 0.227665476381871 0.220945576997297 0.223190147280917 0.235585446881556 0.214913736578209 0.216797004305124 0.223605533508635 0.221981132607160 0.216400346845792 0.217801911274428 0.214913736578209 0.240962357615942 0.222167651752352 0.214913736578209 1 1 - 22722562 22723096 22722817.545 22722370 22723181 - gene protein_coding_gene FALSE TRUE AT1G61570.1 TIM13 (TIM13); protein translocase Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. Identical to Mitochondrial import inner membrane translocase subunit Tim13 (TIM13) [Arabidopsis Thaliana] (GB:Q9XH48;GB:Q94KC4;GB:Q9SY93); similar to TIM8 (Arabidopsis thaliana translocase inner membrane subunit 8), protein translocase [Arabidopsis thaliana] (TAIR:AT5G50810.1); similar to Os04g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053653.1); similar to small zinc finger-like protein [Oryza sativa] (GB:AAD39987.1); similar to Os02g0682600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047752.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) -0.442345315945978 -3.27461382292337 0.00750652079717732 1 3.05467560471904 13.7301725129019 -0.442345315945978 0.178260019188024
AT4G24460_at 6.45815286311941 6.10921028904322 5.98828859969767 5.65983850153852 4.96111592319463 4.69319816950502 6.39635391200411 5.84227996286218 5.60721353252018 5.60613268395237 5.46481569368752 5.91603576649312 5.58219797605562 5.19516549619605 6.07527803557132 6.13473301199569 6.12864954128443 5.02251819856277 5.49116995913794 0.22424339887348 0.225683042983841 0.227922161493821 0.228895312749886 0.231684440178991 0.231574984159796 0.22424339887348 0.22424339887348 0.241513774259322 0.229191921322715 0.230496675867569 0.22424339887348 0.227515192042249 0.237111872317662 0.230436925224979 0.236131167262857 0.232096852116612 0.229802095621608 0.22424339887348 4 4|0 +|/ 12643784 12645027 12644565.75 12642897 12645457 + gene protein_coding_gene FALSE TRUE AT4G24460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19380.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77682.1); similar to Os12g0511300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066868.1) -0.377068400914643 -3.27400131097672 0.00751464620854949 1 3.05372060956798 11.3926029143794 -0.377068400914643 0.134984662368509
AT1G64230_at 12.2131574721011 12.3326188068314 12.4789106772071 12.4394781562377 12.8372555530369 12.7695954705225 11.9787370088399 11.9230356024149 12.2742376747329 12.2145675438162 12.6721147106191 12.1352443695025 12.5003058491831 12.4055139339517 12.0563458367582 12.3015936833560 12.2511521785689 12.1947223997196 12.3905478208144 0.0712247603636143 0.0712247603636143 0.0758223046156883 0.0714726523019345 0.0736803439065632 0.0783209469358314 0.071760929046738 0.0729675425956165 0.0868673538430287 0.0722164198803442 0.0745420306976127 0.0728192020948938 0.0717011784943619 0.0745107677602715 0.0752267429546406 0.074933221555909 0.0741085231010127 0.0782696776631443 0.0730290618574031 1 1|0 +|/ 23837492 23838777 23838453.333 23837221 23839199 + gene protein_coding_gene FALSE TRUE AT1G64230.1|AT1G64230.2 UBC28; ubiquitin-protein ligase similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to ubiquitin carrier-like protein [Arachis hypogaea] (GB:ABI84263.1); similar to ubiquitin conjugating enzyme E2 [Solanum lycopersicum] (GB:CAA51821.1); similar to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (GB:P35135); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.270464591061903 3.27388097116741 0.00751624365634291 1 3.05353297967355 24.6754694933965 0.270464591061903 0.0265324279756535
AT2G27060_at 5.28386891654272 5.97440984430362 4.56298151181312 3.80782110678684 5.03248034798411 5.64147993200703 5.92581275226485 6.11738175299435 7.44503555816829 7.07980889391365 7.65761862430974 7.78180105603669 7.36253449958657 7.28259690478692 7.92885808168942 7.2114163422344 6.51414202860774 8.03736239837224 7.64977520454353 0.171669991867341 0.167772085747449 0.172209032798605 0.169558543736659 0.186176730438908 0.169880261848662 0.169859290100858 0.163996517533223 0.169875389217569 0.164668793066039 0.171490072221407 0.165441519535438 0.169420275560239 0.173145765674899 0.172601818068434 0.162942469160029 0.168866339667944 0.165054031402573 0.167996067973659 2 2 + 11561063 11561560 11561342.818 11558119 11561853 + gene protein_coding_gene FALSE TRUE AT2G27060.1 ATP binding / protein serine/threonine kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G10020.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82620.1); similar to 52O08_19 [Brassica rapa subsp. pekinensis] (GB:AAZ67565.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95661.1) -0.491838117733735 -3.27303525217368 0.00752747990283188 1 3.05221433785144 12.7250700843345 -0.491838117733735 0.208722376132278
AT3G51000_at 9.1179401645589 9.2801518892484 9.66746501659134 9.49738234194454 9.67057209391158 9.26164070231624 9.17467162251941 8.79242871478591 8.39081300084863 8.48162883651516 7.10629774273204 6.94955928836415 7.36379337678452 7.09384243148616 6.96649484726348 7.57806375211275 7.98022005161923 7.74974114762418 8.49599684370747 0.184470120046562 0.181783974383342 0.191733213271503 0.185157754811831 0.18743926142875 0.183227122368163 0.189201671382065 0.185127470123083 0.183105693227923 0.185622992347697 0.188956295502722 0.188698758062317 0.186180656471127 0.195789655130163 0.185113621936187 0.184281629415091 0.199911457328149 0.186282545480828 0.190327112782421 3 3 - 18956304 18956986 18956642.727 18956006 18957602 - gene protein_coding_gene FALSE TRUE AT3G51000.1 epoxide hydrolase, putative similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); similar to Os12g0636400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067364.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -0.337338853181336 -3.27285461759307 0.00752988203768056 1 3.05193268756595 17.2101054716206 -0.337338853181336 0.105062180979881
AT3G06520_at 3.73871175279114 4.01902786907602 3.87409291797899 3.88422144778309 3.04781681820373 3.60550812085704 4.17603551847809 4.52486245066659 3.70870776875804 4.06917514261026 3.86865273937183 3.57199743900007 4.02006035838148 3.73274712609977 3.65444299216463 3.75948956933462 4.38194279648231 3.76514514266271 4.3880118654722 0.165878310920799 0.16712446150742 0.169810321363834 0.168277686533074 0.171064512347303 0.17321347590449 0.178153612394116 0.168157406293954 0.173040184290352 0.166057431996182 0.162634062864811 0.16302181343218 0.165618939899070 0.167752027481751 0.164031731794762 0.172374693046274 0.170229161254248 0.168706692617754 0.168508129965371 3 3 + 2021371 2021911 2021647.545 2020290 2021961 + gene protein_coding_gene FALSE TRUE AT3G06520.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G09320.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44232.1); contains InterPro domain Agenet; (InterPro:IPR008395) -0.361369030028452 -3.27222664267434 0.00753823912643296 1 3.05095351707531 7.80858862667134 -0.361369030028452 0.123752783987650
AT3G26600_at 8.203708933615 8.39013830713153 8.756496250439 8.74944160253265 7.66167615617069 7.62009010080481 7.1115413525516 6.4362138538673 6.30321071952203 5.79968403950175 5.97188711052552 6.17104098322022 5.86786520781894 5.99947624506469 5.27342714123977 6.15454629595371 6.56194812035096 6.44385335996395 5.8992357371806 0.227409543002404 0.226771017698361 0.226736271647829 0.228008902779696 0.232019522897425 0.225821857636977 0.220778990325773 0.224326689394589 0.228849405207493 0.225504592265258 0.226759517879069 0.223126840840161 0.230170708115472 0.227283041762713 0.229590582522701 0.220778990325773 0.229924693472632 0.230135376094209 0.222807067747063 3 3 + 9772379 9772949 9772654.636 9770981 9773272 + gene protein_coding_gene FALSE TRUE AT3G26600.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66200.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34223.1); similar to Os09g0536200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063784.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.358160404155595 3.27101252599338 0.00755442341274236 1 3.04906033789768 13.8942711813484 0.358160404155595 0.121459511464124
AT1G15280_at 6.2556885541551 6.15742744292261 6.11952414196537 6.2346613575478 6.89239121805184 6.8042999257617 6.41822917270739 6.43093770958812 5.34318499600027 5.80612905253407 5.76565813021818 5.98947472961494 6.19041903146202 6.01566053262623 5.88834665379715 6.39873309761802 5.83499087382617 5.9416414219594 5.82072924296225 0.196645289404466 0.19358380694211 0.200860115872828 0.201376674935699 0.195457836679433 0.199175816271858 0.196258982613124 0.197152522357454 0.205743518743585 0.197178179452390 0.199364483889214 0.198597410851022 0.198764600642506 0.194711645897470 0.194569613893785 0.195096990228756 0.214525207498107 0.201500830295249 0.195598020496000 1 1|0 +|/ 5254260 5255870 5254810.444 5252310 5256748 + gene protein_coding_gene FALSE TRUE AT1G15280.1|AT1G15280.2 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80000.2); similar to Os01g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043467.1); similar to glycine-rich protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52900.1) 0.271791451356553 3.27067092464622 0.00755898337220747 1 3.04852766114646 12.2440432683654 0.271791451356553 0.030387436643664
AT2G24310_at 1.09375590343835 1.51765306673445 2.00387845952478 1.76965691421528 1.46273070976790 1.69685048063985 1.51809913337540 1.31663524983667 0.823144748508718 1.15466821385219 1.21643081541464 1.13777429300423 1.22585261069225 1.04046329460219 1.50884707527418 1.27582913995539 0.650227801759384 1.72523611445794 0.823634633237736 0.255625984332718 0.253825263537430 0.25516636985042 0.253570378039804 0.249169928631746 0.260604005184482 0.246903590306705 0.257158165520449 0.260833629196422 0.273928524636098 0.246903590306705 0.251627760698259 0.249209146753942 0.256088470310550 0.261290245613159 0.248642234820386 0.260810203107872 0.258581277856683 0.254010351896722 2 2 + 10351863 10352213 10352056.455 10351438 10352590 + gene protein_coding_gene FALSE TRUE AT2G24310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47170.1); similar to hypothetical protein DDBDRAFT_0168484 [Dictyostelium discoideum AX4] (GB:XP_645495.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078830.1) 0.330255040318107 3.27024678981213 0.0075646489576371 1 3.04786627600272 2.62560674386387 0.330255040318107 0.0994045482727237
AT1G55920_at 9.96812451349877 10.1118618578216 10.7068730710194 10.8671193006898 10.7689824687552 10.9172039733769 10.6745377929804 11.1145011982736 10.0534244687926 10.6835882644483 10.7271946902051 10.5065131968363 10.961830526883 10.7246771141638 10.1584486012745 11.0317077987190 11.0350516739296 10.8499870589921 10.6474553874549 0.0764908667855513 0.0754616804227892 0.0749722622518568 0.0770030336376642 0.0736569926073717 0.0807804406171206 0.0733840912206826 0.0767081180206874 0.0868711558393916 0.0741375439040756 0.0751552328507052 0.0730666673103273 0.074079900703132 0.0849614457323832 0.0802927792878784 0.0728487140626591 0.082477651083138 0.0789988972302081 0.074844861478298 1 1 + 20916448 20916924 20916628.727 20915781 20917112 + gene protein_coding_gene FALSE TRUE AT1G55920.1 AtSerat2;1 (SERINE ACETYLTRANSFERASE 1) Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Identical to Serine acetyltransferase 1 (EC 2.3.1.30) (AtSAT-1) (SAT-p) (AtSERAT2;1) (SAT1) [Arabidopsis Thaliana] (GB:Q42588;GB:Q43297); similar to AtSerat2,2 (SERINE ACETYLTRANSFERASE 1), serine O-acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G13110.1); similar to serine acetyltransferase (GB:AAC37474.1); contains InterPro domain Serine acetyltransferase, N-terminal; (InterPro:IPR010493); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Serine O-acetyltransferase; (InterPro:IPR005881); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) 0.31786266093845 3.26996914497093 0.00756836007664307 1 3.04743331787892 21.2466083751473 0.31786266093845 0.0885588014271282
AT4G05050_at 12.5479025501570 12.6734743287569 13.1052510778113 13.0274209530229 12.8181046865844 12.7353882137752 12.8167551689738 12.9900047830635 12.8637092263879 12.7439759758575 13.2018942538385 12.9687438327508 13.0653514372225 12.9933873072386 12.8573317333112 13.2206335245242 13.1440943526732 13.1703661179963 12.4535586870394 0.0560793012761346 0.0560793012761346 0.0570920019988031 0.0580904141889313 0.0560793012761346 0.0584524941600435 0.0574021239285593 0.0560793012761346 0.0560793012761346 0.0571437579876806 0.0560793012761346 0.0567566401435699 0.058176178881144 0.057690294908335 0.0592326496177272 0.0560793012761346 0.0580798341017697 0.0581879425882845 0.0586224959892791 4 4 - 2588512 2588569 2588544.273 2588002 2589384 - gene protein_coding_gene FALSE TRUE AT4G05050.1|AT4G05050.2 UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ14 (ubiquitin 14), protein binding [Arabidopsis thaliana] (TAIR:AT4G02890.3); similar to ubiquitin [Antirrhinum majus] (GB:CAA48140.1); similar to ubiquitin-like protein [Phaseolus vulgaris] (GB:AAB36545.1); similar to pentameric polyubiquitin (GB:AAA34124.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.277575524288383 3.26850317517827 0.0075879856453092 1 3.04514721554745 25.7216910284545 0.277575524288383 0.0419218426111104
AT2G02080_at 8.90064280544652 9.07165674859041 9.1845724460841 9.06809141035127 10.0594244621480 9.82196219128987 9.15402179349832 9.1195044916557 9.42126937671027 8.59064675173805 9.46359505330436 9.08316852783878 9.27561152513377 9.27675216941757 8.96069163149804 8.90733941396846 8.73417493998647 9.03920116708743 8.96437665756552 0.106866172980592 0.102908905912750 0.108454067684761 0.104213277856634 0.108917007912983 0.107214481083165 0.108784589212633 0.107442956315644 0.113174107995419 0.106398771226644 0.107031648069570 0.100303496919992 0.103892755608048 0.110978004168145 0.110942842098686 0.101700851739026 0.108795722768525 0.10912182399046 0.107497366136512 2 2 - 518378 518893 518674.091 518158 521706 - gene protein_coding_gene FALSE TRUE AT2G02080.1 ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4); transcription factor similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G14580.1); similar to Os08g0554400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062466.1); similar to INDETERMINATE-related protein 1 [Zea mays] (GB:AAV51393.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.286262687930994 3.26835471386219 0.0075899760515534 1 3.04491569090371 18.3398167430667 0.286262687930994 0.0548322206160058
AT3G43210_at 2.57458538387398 2.71195964438417 3.20251659579963 2.99775589128601 3.3633425798394 3.46316661796254 2.69279828860982 2.94395741872096 3.30794123464701 2.64486155842695 3.31852746769534 2.72511284799876 2.95206782649123 3.08958895454456 3.09224361813068 2.7675657233148 3.46236747380831 3.44030748885887 3.1844108915209 0.21348605958628 0.208920707496082 0.214524240875965 0.212723116932900 0.217833261095156 0.217317808764833 0.217885693027025 0.209120402653973 0.221073926654689 0.210811126431970 0.211590700144514 0.208920707496082 0.216832851714898 0.211854761832485 0.211771180052873 0.208920707496082 0.214248065784719 0.219302432910551 0.208920707496082 3 3 + 15206408 15206925 15206653.364 15201922 15207156 + gene protein_coding_gene FALSE TRUE AT3G43210.1 TES (TETRASPORE); microtubule motor Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis. similar to HIK (HINKEL), microtubule motor [Arabidopsis thaliana] (TAIR:AT1G18370.1); similar to kinesin-like protein NACK1 [Nicotiana tabacum] (GB:BAB86283.1); similar to kinesin heavy chain [Zea mays] (GB:AAK91813.1); similar to kinesin-like protein NACK2 [Nicotiana tabacum] (GB:BAB86284.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) 0.293052508782513 3.26834660640159 0.00759008476280364 1 3.04490304732400 6.0696155875447 0.293052508782513 0.0633116131698724
AT1G49530_at 3.13547875199969 2.98785670441098 3.59127547885044 3.38759976394564 3.2352596662706 3.30112480256395 3.31000826693242 2.91795166421137 3.20484506650196 3.22116955003485 3.52025610974934 3.97584502444439 3.47473394743685 3.61090739436405 3.48398636136146 4.17353056328399 4.09976298638170 3.92279277811403 3.93450558955281 0.181640064619413 0.175943569423028 0.180840064601358 0.178793274446062 0.184509632947861 0.182681374646096 0.183995887605650 0.175943569423028 0.185720054252950 0.178709342960174 0.179238299619494 0.180345528786245 0.179243133179819 0.178126825648867 0.179787094764344 0.176995823531813 0.179774107180612 0.178916034324322 0.182424939981339 1 1 + 18336623 18337119 18336812.182 18336097 18337357 + gene protein_coding_gene FALSE TRUE AT1G49530.1 GGPS6 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6); farnesyltranstransferase encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase Identical to Geranylgeranyl pyrophosphate synthetase 6, mitochondrial precursor (GGPP synthetase 6) (GGPS6) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] (GGPP6) [Arabidopsis Thaliana] (GB:O22043;GB:Q9XIC0); similar to geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative [Arabidopsis thaliana] (TAIR:AT3G20160.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.310105620648907 3.26831668086944 0.00759048604177172 1 3.04485637844192 6.85143620290073 0.310105620648907 0.0814134671218966
AT2G23070_at 10.4497323353221 10.4364345069976 10.6267714317659 10.5763408138209 10.8830107570270 10.7082677355473 10.5176338474947 10.4838662145946 10.047285631833 10.2284659413639 10.7010617930563 10.6556901982886 10.5565003845999 10.3922400682878 10.4831384963138 10.6537435226555 10.2887120906287 10.3543179209354 10.3023961486728 0.0762050713554994 0.0774839379694798 0.0773351278307755 0.0835804517392813 0.0759511429343852 0.0787127122832072 0.0780812283330234 0.0761167963762235 0.0914049149601863 0.0792632884528929 0.0803953595208826 0.0780591166135035 0.0782057786923046 0.0841413934524101 0.0799823447049113 0.0759511429343852 0.0898857916859257 0.0809827936499065 0.079817197510376 2 0|2 /|- 9831254 9832139 9831697.333 9831045 9833978 - gene protein_coding_gene FALSE TRUE AT2G23070.1 casein kinase II alpha chain, putative similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to casein kinase II alpha subunit [Sinapis alba] (GB:CAD12663.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.272320305246910 3.26776969078735 0.00759782458040965 1 3.04400333784423 20.9369529386391 0.272320305246910 0.0320947386896414
AT1G64510_at 10.4381343866160 10.5349622424483 9.4775309699188 9.65755356773174 10.3414858121563 9.59020264343978 10.6118283721469 10.6885100098064 11.1202044309401 11.0656251601609 11.1698537640813 11.4832590693927 10.8842969709676 11.0525755950306 11.6217693056206 11.0571638068984 10.3134973659347 11.1146605297698 10.9313652548897 0.124852265955990 0.112680089818515 0.126716840813138 0.117913333038683 0.112165432604084 0.123911087005001 0.116013156331281 0.115513611740328 0.126138810141285 0.114274803704578 0.114146744759292 0.114650964486420 0.114675964464084 0.118734319484772 0.115303317231084 0.117432697600223 0.132229832480058 0.112963752697362 0.112165432604084 1 1 - 23958683 23959794 23959341.455 23958466 23959914 - gene protein_coding_gene FALSE TRUE AT1G64510.1 ribosomal protein S6 family protein Identical to 30S ribosomal protein S6 alpha, chloroplast precursor (RPS6) [Arabidopsis Thaliana] (GB:Q8VY91;GB:Q9SGW4); similar to 30S ribosomal protein S6 alpha, chloroplast precursor [Contains: 30S ribosomal protein S6 beta; 30S ribosomal protein S6 gamma; 30S ribosomal protein S6 delta; 30S ribosomal protein S6 epsilon] (GB:P82403); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529) -0.37679795107219 -3.26667891771145 0.00761248022864203 1 3.04230220561519 21.2306257503458 -0.37679795107219 0.135391386639054
AT2G41680_at 10.1828303113985 10.2690335151953 9.96005590827504 9.84294455793961 10.0583502671322 9.64480829515925 10.7783625349556 10.7723102602510 10.6680195576985 10.8662523862065 10.7664080731307 10.8688153953880 10.6352332320688 10.7453643885025 10.9182817285703 10.8089489767024 10.2550983808753 10.6586366925767 10.5405803820542 0.0923398467515154 0.0863910268056411 0.090413336724723 0.0894275772066814 0.0890435080077312 0.096554878013449 0.0870508703313496 0.0863910268056411 0.091521242481764 0.0882233808774955 0.0872810341447491 0.0863910268056411 0.0863910268056411 0.0890789858442814 0.0870552319322927 0.0868432971691205 0.0941566346622513 0.0910957103395642 0.0889293626372987 2 2|0 -|/ 17383435 17384435 17383968.444 17383233 17386132 - gene protein_coding_gene FALSE TRUE AT2G41680.1 thioredoxin reductase, putative / NADPH-dependent thioredoxin reductase, putative similar to NTRA (NADPH-dependent thioredoxin reductase 2) [Arabidopsis thaliana] (TAIR:AT2G17420.1); similar to Os07g0657900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060515.1); similar to thioredoxin reductase [Nostoc sp. PCC 7120] (GB:NP_484780.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin reductase; (InterPro:IPR005982); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.304306740916580 -3.26588257056696 0.00762319815978614 1 3.04106020585451 20.8879448565199 -0.304306740916580 0.0758681698831965
AT1G12660_at 2.23297246220499 2.87750729435411 2.08616535379322 3.05062060373784 1.38283003146682 2.25431044522666 1.85183001506634 2.58696854985767 2.93909586386355 2.34943866490418 1.66364153138509 2.03164925165398 1.43255804454599 1.81293479232064 1.53948781313362 1.20275906492220 1.76341553798632 2.69672837257288 3.13532632693847 0.339020941697211 0.356943167773943 0.351223822429149 0.340264013429483 0.330638601020525 0.340284934872221 0.330638601020525 0.330638601020525 0.342462455075150 0.330638601020525 0.330638601020525 0.330638601020525 0.342081589352729 0.348124176662968 0.33377030934945 0.335855452337021 0.337578315605466 0.330638601020525 0.337648264485827 1 1 + 4308954 4309214 4309139.333 4308941 4309556 + gene protein_coding_gene FALSE TRUE AT1G12660.1 Encodes a Plant thionin family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12663.1) -0.616947394659139 -3.26565293871643 0.00762629160072082 1 3.04070206028866 4.57832580428037 -0.616947394659139 0.281473602516673
AT1G10830_at 6.41640543385833 6.62314256273439 6.5802659396309 6.7191291417667 6.8149046863788 6.94902896377913 6.89415669699268 7.28632983596198 6.85637405560238 6.72065602285505 7.38352254287143 7.38358730934661 7.17950811960504 7.47018764391022 7.57245926439627 7.40401878662308 7.14540996702089 7.54866144799287 6.59007659323675 0.143642364073883 0.136798528844099 0.139142683785325 0.13909519143686 0.138596834575938 0.135905192545613 0.143005911080458 0.128607967478610 0.148795631014277 0.142989750734451 0.136294460117239 0.131916507631998 0.131295203362374 0.141356375610671 0.134782243514084 0.128529972733472 0.137510947158295 0.138300493770257 0.137090649424804 1 1|0 -|/ 3605772 3606823 3606349.4 3605577 3607494 - gene protein_coding_gene FALSE TRUE AT1G10830.1 sodium symporter-related similar to Os12g0405200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066625.1); similar to NnrU [Medicago truncatula] (GB:ABE92591.1); contains InterPro domain NnrU; (InterPro:IPR009915); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.312187022579056 3.26541106409476 0.00762955135140064 1 3.04032481693498 13.8395645455306 0.312187022579056 0.0836791009590053
AT4G28230_at 2.08732589885777 2.50908032912347 3.04381579154307 2.64859202904136 2.4955716425813 2.81577428962634 2.49906261937422 2.29768404166357 2.69091667349123 2.80794065282300 2.84228553404712 3.14909744361232 3.29865321220465 3.13470758349493 3.47020920181739 3.03709486728476 2.79963788841997 2.99838450535425 2.8533124912564 0.212039429848711 0.206883604200594 0.208946794959267 0.216725166828174 0.204951060540479 0.213837567217844 0.206648298602604 0.211057276409156 0.221093006421861 0.210425142404972 0.204951060540479 0.211021544434175 0.210313244857484 0.209510644932561 0.212609716482418 0.204951060540479 0.208284352767438 0.212385756908618 0.210836156855412 4 4 - 13996007 13996524 13996221.455 13995785 13997313 - gene protein_coding_gene FALSE TRUE AT4G28230.1 unknown protein 0.354926194807905 3.26470181483515 0.00763911811246518 1 3.0392186060572 5.48727102291954 0.354926194807905 0.119540781692368
AT3G13280_at 1.78945443896175 1.69147920301493 1.83138940615397 2.01687239115519 2.00380670177172 2.1916105896526 1.50979158020139 1.59446695951516 1.69609892212112 1.59159130409207 1.95585984978982 1.46584678537393 1.46727272212438 1.65881424922706 1.74164297785163 1.02125592557034 2.24922538257921 1.98407126249161 1.18741530950468 0.212201673991167 0.207548381300768 0.221456872996308 0.20626433735393 0.20990922753052 0.209864043888065 0.213907527557436 0.202466340834099 0.206247327972716 0.211949773518693 0.215595559747451 0.207820260916346 0.205710985677892 0.213444233319248 0.207267286039703 0.206200765927970 0.214254295406912 0.213487610750293 0.205544923723834 3 0|3 /|- 4295389 4296112 4295814.6 4295334 4297007 - gene protein_coding_gene FALSE TRUE AT3G13280.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G62850.1); similar to Os12g0162900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066226.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.282959262948387 3.26347046485932 0.00765575631683146 1 3.03729800882440 3.42095915361098 0.282959262948387 0.0508802209803727
AT4G33180_at 3.93667372186234 3.46010402445598 3.82383132753711 3.35593440068868 4.48030561166308 4.07726227663024 3.87401944021962 3.69604749529024 3.90921757596 3.67332478033389 4.60341759810653 4.79251112660968 4.30406972574221 4.40159717365948 4.19198938683203 4.11254386693917 3.94803696541579 3.94051361099509 3.57120827323085 0.152229451009514 0.153411104773605 0.152859441875957 0.161488172311165 0.153398529732183 0.158695821070933 0.155456344392598 0.156720024422243 0.162913056981799 0.157183695589485 0.156037563240621 0.156656026970234 0.156461303541318 0.156030498845906 0.153332859447786 0.152432992011822 0.159573728169360 0.158691571729245 0.152441611487507 4 4 + 16000307 16001408 16000883.143 16000180 16002272 + gene protein_coding_gene FALSE TRUE AT4G33180.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G21950.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE81749.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.380770144475993 3.26342884456486 0.00765631934197438 1 3.03723309005793 7.84039819144128 0.380770144475993 0.138461484641358
AT1G10730_at 3.03579409875823 2.89111927166425 3.08065097451184 2.88687013853484 3.01702145377266 2.71482948146311 2.69466458572161 2.50209708875488 2.53602212090246 2.69649385742932 2.89373361895988 2.84639148950896 3.30736699594147 3.04457668698677 3.15823762271057 2.98928194230371 2.9210961676825 3.11527612801849 2.48455016318907 0.172346732237052 0.169077754470888 0.168100111611934 0.170625622939178 0.169263897406913 0.171535039571834 0.169348769443475 0.176957157805895 0.179332840411478 0.171173135624435 0.169550888856085 0.174930997837428 0.179512979216707 0.175617708856176 0.172408763534803 0.170760199479372 0.175516221440746 0.170904472367457 0.171491764516618 1 1 + 3566839 3567713 3567276 3565464 3567780 + gene protein_coding_gene FALSE TRUE AT1G10730.1 clathrin adaptor complexes medium subunit family protein similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT1G60780.1); similar to clathrin-associated protein unc-101-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81570.1); similar to Os01g0703600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044001.1); similar to Os05g0543100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056201.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) 0.303031975926484 3.26321776710646 0.00765917537558675 1 3.03690385277255 5.65630611765818 0.303031975926484 0.0748116826837543
AT4G17550_at 5.07124535623716 5.30776814210075 6.74522352441129 6.87195470061123 6.92261890399043 6.20516822131985 7.45291089830563 7.99175137751533 4.91409699295715 5.59131537372689 6.27816233688884 5.36050612232661 7.07795768872085 6.14051544570737 5.15509826526744 5.60708505450965 6.12655904388045 5.56646857369961 5.43560808801505 0.201183602290515 0.204419578261512 0.210974512124182 0.206484847774725 0.205514222385704 0.212079959445131 0.209039083457435 0.221887227723956 0.213812465267849 0.207722959742264 0.209561979296643 0.201183602290515 0.204381932250867 0.21594066758222 0.218749594504632 0.202385063815479 0.208793254677195 0.209427514939422 0.210454814968407 4 4 - 9778120 9778544 9778353 9777661 9779751 - gene protein_coding_gene FALSE TRUE AT4G17550.1 transporter-related similar to glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative [Arabidopsis thaliana] (TAIR:AT3G47420.1); similar to transporter, putative [Brassica oleracea] (GB:ABD65069.1); similar to transporter, putative [Brassica oleracea] (GB:ABD65148.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.415346487759444 3.26104974920081 0.00768857318108951 1 3.03352204254249 12.1849389161989 0.415346487759444 0.162070877134057
ATMG00660_at 6.14406094537364 6.8408364272436 6.79599660468645 5.95867918476936 6.15429191794633 5.77473324457273 5.88789496526528 6.59611460455321 7.47147487501304 7.62736848653368 6.80195151119156 7.89689394759242 7.23230112514455 6.66546843011482 4.94648485257069 6.71456272414145 6.7283493453007 6.02238697502999 7.38968691543447 0.269691810336249 0.280788575323818 0.266611444240282 0.27613992203306 0.266611444240282 0.277679365441806 0.289076947970056 0.292575955167119 0.281936991200549 0.268140526235545 0.282519035964534 0.301099847662146 0.280514789341626 0.286142141364526 0.289133055611750 0.266611444240282 0.273405825900294 0.274371160655191 0.269670094874348 M M - 190106 190516 190306.091 190104 190553 - gene protein_coding_gene FALSE TRUE ATMG00660.1 Identical to Hypothetical mitochondrial protein AtMg00660 (ORF149) [Arabidopsis Thaliana] (GB:P93318); similar to unknown [Brassica napus] (GB:AAB41356.1) -0.533214196361587 -3.26093416193203 0.00769014374186845 1 3.033341734637 13.3301892982411 -0.533214196361587 0.234247011415572
AT1G29940_at 5.28605052055169 5.54932565245141 5.59401710100168 5.29460961669094 5.17337529400301 5.01792755511899 5.5521790911832 5.3120880274307 3.60367651292331 4.66320464021106 3.74749079508536 3.63319870223863 3.87190753660144 3.6676224635704 4.18184223609938 4.1155338060072 4.46849046096696 3.95526079934117 5.01205566469594 0.221552749563495 0.223841016854109 0.220305527562882 0.217930875188116 0.225217032145333 0.217860221926558 0.224045582731173 0.220500489306049 0.228874446129387 0.226879659363099 0.218796322574459 0.216370405690284 0.22245911957204 0.216811452472960 0.217595600741941 0.216370405690284 0.216979941921045 0.217309030301297 0.218482992847542 1 1 - 10479385 10479977 10479651.364 10479105 10486803 - gene protein_coding_gene FALSE TRUE AT1G29940.1 NRPA2 (nuclear RNA polymerase A 2); DNA-directed RNA polymerase Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). similar to NRPC2 (nuclear RNA polymerase C 2), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G45140.1); similar to hypothetical protein SPBP23A10.07 [Schizosaccharomyces pombe 972h-] (GB:NP_595819.1); similar to DNA-directed RNA polymerase, beta subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47823.2); similar to putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAM92814.1); contains InterPro domain RNA polymerase beta subunit; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 7; (InterPro:IPR007641); contains InterPro domain RNA polymerase Rpb2, domain 2; (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6; (InterPro:IPR007120); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase, beta subunit; (InterPro:IPR007121); contains InterPro domain RNA polymerase I, Rpa2 specific; (InterPro:IPR009674) -0.313036176910938 -3.26066588468818 0.00769379026262496 1 3.03292323827431 9.53818691860341 -0.313036176910938 0.0849143729903874
AT1G30860_at 4.60168472866354 4.77795598330728 5.27305215464646 5.80954045051749 5.2907458256616 5.23623282479934 5.34271502572409 5.16310019905775 3.21847965218697 4.07835384669036 3.45805682814803 3.35605223030154 3.94968645789250 4.2221471513589 3.18287682149225 4.50732529435405 4.93598061399605 3.77485608291586 3.76534100204714 0.250112870119007 0.251847763667677 0.257619320835011 0.250112870119007 0.265829848887071 0.261397385544773 0.265458998116033 0.256208742879843 0.272710869090289 0.253181646893581 0.254922753252773 0.262547385274566 0.250112870119007 0.250112870119007 0.264280319324036 0.254296337181998 0.254206314000109 0.273472893321736 0.258786500766250 1 1 - 10986691 10987335 10987058.818 10986504 10989485 - gene protein_coding_gene FALSE TRUE AT1G30860.1 protein binding / zinc ion binding similar to EDA18 (embryo sac development arrest 18), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G34920.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31049.1); similar to Os07g0499800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059716.1); similar to Os02g0823300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048568.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.33350500723365 3.26016131414475 0.0077006533411565 1 3.03213612733026 8.99226049172997 0.33350500723365 0.102981979113248
AT4G00330_at 9.37434120263009 9.46136779211076 9.78994032740458 9.73928725132802 9.5647726797579 9.64543735593032 8.3405526935184 8.81208330640489 9.87418106791488 9.19707868151396 9.86148014371532 9.19986813463747 9.3446805694244 9.764555514013 8.98033524803147 9.40819467819732 8.833064400037 9.72734960647214 9.28611925202773 0.122997254456281 0.119692996950543 0.118792881549223 0.125288129790308 0.121884583953266 0.12864541007483 0.133372256934913 0.126826407848617 0.138089870786449 0.132373268799089 0.122713619435849 0.124962880430645 0.121780840412335 0.129332177134066 0.127722162032033 0.118893636147485 0.141577383187005 0.122588920374251 0.131342012294687 4 4 - 142862 143500 143186.222 142601 144523 - gene protein_coding_gene FALSE TRUE AT4G00330.1 CRCK2 (calmodulin-binding receptor-like cytoplasmic kinase 2); kinase high overall homology to CRCK1 similar to CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G58940.1); similar to Os03g0148700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048968.1); similar to calcium/calmodulin-regulated receptor-like kinase [Medicago sativa] (GB:AAT68475.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.312627262301497 3.25987209207681 0.00770459010073392 1 3.03168494523921 18.7621731781197 0.312627262301497 0.084600064150409
AT3G16785_at 4.67428051911759 4.82710569738869 5.15274902916184 4.81162484440707 5.09764455166649 4.92957275907449 4.64955762698165 4.39866892871568 4.56180182844857 3.89228498071883 4.49016867740316 4.31373219822145 4.68107885284578 4.56373323112238 4.29744214068625 4.70567825588039 4.43498756951694 4.35504391301368 4.20195660053911 0.148145826262874 0.141416197081574 0.148580991452966 0.145234505564430 0.145280390561200 0.1455755561191 0.147355419816506 0.145914436624586 0.143344312122464 0.148558376360088 0.143412209604129 0.143183522999107 0.146432913105786 0.143185976741289 0.146160319986621 0.145709691089280 0.146620813105511 0.149397278505475 0.152056228150589 3 3 + 5711338 5718489 5714959.85 5711088 5719029 + gene protein_coding_gene FALSE TRUE AT3G16785.1 PLDP1 (PHOSPHOLIPASE D ZETA1); phospholipase D Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Does not appear to be involved in root hair patterning. Not induced upon Pi starvation. Identical to Phospholipase D p1 (EC 3.1.4.4) (AtPLDp1) (Phospholipase D1 PHOX and PX containing domain) (Phospholipase D zeta 1) (PLDzeta1) (PLDP1) [Arabidopsis Thaliana] (GB:Q9LRZ5); similar to PLDP2 (PHOSPHOLIPASE D ZETA 2), phospholipase D [Arabidopsis thaliana] (TAIR:AT3G05630.1); similar to Os05g0358700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055304.1); similar to Phospholipase D/Transphosphatidylase; Pleckstrin-like [Medicago truncatula] (GB:ABD28341.1); similar to putative phospholipase D-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC00694.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736) 0.311023285646993 3.25893099320932 0.0077174141111073 1 3.03021681180261 9.16710761526673 0.311023285646993 0.083158935359844
AT2G25470_at 1.48202222288180 1.91367463767445 1.02407271020972 1.25914113494667 1.29186472597625 1.20010305477031 0.982755664010329 1.08559080346652 1.62514811139498 1.53990828858029 1.20949359455007 0.865571700276603 0.762474811900679 0.677192082123889 1.16656504766293 0.885940104444266 1.04677315002373 1.10957213108959 1.11387444948381 0.216078862207701 0.213161343589996 0.201368692013298 0.207531819316281 0.206443141922108 0.202450136478620 0.203197322516932 0.202248150282337 0.205220039519204 0.201368692013298 0.202217465530718 0.202722857759926 0.212678552068911 0.201368692013298 0.207100697375276 0.204891037417824 0.220730395201858 0.204297925771491 0.208600806330246 2 2 + 10848377 10848925 10848642.909 10845498 10848959 + gene protein_coding_gene FALSE TRUE AT2G25470.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74190.1); similar to Os04g0647900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054072.1); similar to H0821G03.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86057.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.316538940463299 -3.25882127953612 0.00771891055423651 1 3.03004565292131 2.47578217469800 -0.316538940463299 0.0883386414439776
AT4G24160_at 7.31376904041074 7.44634581757848 7.71352843602712 7.70500060284056 7.34480958681849 7.11055397155915 7.11194937566194 7.10913756695653 6.74838968317249 6.57176339373424 6.72492581017199 6.82852558381247 6.60654547712565 7.08308853507126 6.95440209567706 6.95445766183523 6.85016170023049 6.99882837783015 6.29684275078749 0.183349277574583 0.171169315762339 0.178962281893515 0.177503651718863 0.175998265855701 0.176812246959724 0.171169315762339 0.175953241266791 0.181506431705791 0.176440353455751 0.176256325200707 0.171204578827142 0.176217521193976 0.177662939832174 0.177027768710849 0.172142814310663 0.179745145309499 0.17632014313108 0.174636458705427 4 4|0 +|/ 12541206 12542164 12541749.778 12539787 12542499 + gene protein_coding_gene FALSE TRUE AT4G24160.1|AT4G24160.2 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36530.2); similar to Os09g0520200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063697.1); similar to CGI-58 protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46672.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089)|similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36530.2); similar to Os09g0520200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063697.1); similar to CGI-58 protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46672.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Peptidase S33, prolyl aminopeptidase; (InterPro:IPR002410); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.279645497573643 3.2586122901647 0.00772176188950536 1 3.02971961701643 14.0639445569570 0.279645497573643 0.0466069737638615
AT1G73440_at 4.7362695160909 5.1672740848303 4.39584251894669 4.9041031089438 4.94232732239449 4.84279671695057 5.28774483731655 5.22403308919325 4.67070322189442 5.26082317287202 5.12402882913962 4.92655018032286 5.08068712310844 4.58074272088073 4.57518758297819 4.9448160527768 4.83527575276542 4.82831603089102 5.76302506682065 0.211826438213477 0.203266181554547 0.199054294868312 0.210197939681644 0.206196094614911 0.210095858368117 0.204861051005160 0.203105551781698 0.211699099423462 0.204784078155648 0.203595253043101 0.200400291935955 0.198816242574124 0.205144836063231 0.209947531330736 0.198816242574124 0.209034749510551 0.204865596039001 0.201103162781395 1 1 + 27615248 27615818 27615506.778 27615024 27616476 + gene protein_coding_gene FALSE TRUE AT1G73440.1 calmodulin-related similar to EDA34 (embryo sac development arrest 34), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G00140.1); similar to Os04g0534300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053415.1); similar to Calcium-binding EF-hand; Ubiquitin interacting motif [Medicago truncatula] (GB:ABE85339.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) -0.35106479240167 -3.25830138544761 0.00772600568742912 1 3.02923458244795 9.98428274331844 -0.35106479240167 0.117123531204163
AT4G22150_at 8.04637734593486 8.39639644379329 8.74686829674614 8.5107511435678 8.88974369434482 8.64193639891624 8.31078611601769 8.1956337457436 8.3200180821264 8.33262720716225 8.64153355694515 8.60535916490273 8.374562586336 8.59637318839431 8.36243293693395 8.27172046498606 8.36269777853384 8.46410885603562 8.21655125507495 0.128430195825487 0.123864707290305 0.123966476008763 0.125135474770625 0.123825270112663 0.133465302975472 0.132808064160756 0.125769355395788 0.134384543766439 0.133068973134953 0.130325560213194 0.121024256289220 0.136389685438322 0.130877046463737 0.128418957308647 0.128101843882408 0.134605587532338 0.130417108153291 0.121024256289220 4 4 - 11731295 11732023 11731503.273 11731150 11732691 - gene protein_coding_gene FALSE TRUE AT4G22150.1 PUX3 (LANT UBX DOMAIN-CONTAINING PROTEIN 3) Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3) similar to PUX4 (LANT UBX DOMAIN-CONTAINING PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT4G04210.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain SEP; (InterPro:IPR012989) 0.315071427850155 3.25827478490234 0.00772636889081925 1 3.02919308335418 16.8421020221770 0.315071427850155 0.0870334561178719
AT2G40890_at 9.14391569999387 9.44812197257802 9.04310061181947 9.13240522715396 9.28665728426907 9.15348600394383 9.50010846633188 9.67213746209428 9.32482706102094 9.42790932957311 8.92929589761298 9.05113486052552 9.29815184617643 9.19492975035278 8.9340904137561 9.45333531660739 9.1913171424705 9.0055113046527 9.55202995566926 0.100947482701378 0.101405503618377 0.108099774733272 0.101041838082032 0.102725621801173 0.100525585380975 0.101891070793772 0.103507163678075 0.103589600525092 0.0997233952710142 0.102377229375199 0.097493970771702 0.102644301004773 0.104063514621076 0.101353374378562 0.101627756003377 0.0994247647929918 0.101901294996541 0.0989335495392313 2 2 - 17065387 17065880 17065661.091 17065131 17067730 - gene protein_coding_gene FALSE TRUE AT2G40890.1 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); p-coumarate 3-hydroxylase encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level. Identical to Cytochrome P450 98A3 (EC 1.14.-.-) (CYP98A3) [Arabidopsis Thaliana] (GB:O22203;GB:Q940C7); similar to CYP98A9 (cytochrome P450, family 98, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G74550.1); similar to Cytochrome P450 98A2 (GB:O48922); similar to cytochrome P450 monooxygenase CYP98A37 [Medicago truncatula] (GB:ABC59086.1); similar to p-coumaroyl shikimate 3'-hydroxylase isoform 2 [Ocimum basilicum] (GB:AAL99201.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.294929958677366 -3.25819995601007 0.00772739069654767 1 3.02907634375466 18.5810630569932 -0.294929958677366 0.0665406627459571
AT1G12600_at 1.64246151912457 2.47896997758511 1.95268934810407 2.30782511782201 1.30462059968590 1.56005562546612 1.87743018661787 2.30460184374683 2.59031982472989 2.82008783405177 1.69437598974196 2.07272488344827 2.09812816200788 2.04383184306805 1.78329162931488 2.32889949179207 2.01777731614149 2.90436317271488 2.71021129015288 0.208599704606834 0.211046746265081 0.224616551430366 0.213380717647414 0.208632684484448 0.203997923473527 0.208954142036547 0.204069906655744 0.20916684076018 0.206145912493774 0.204540120112048 0.203997923473527 0.206663578287524 0.207235703559648 0.211935934949985 0.203997923473527 0.210476776275329 0.206094365634503 0.210458458318592 1 1 - 4286478 4287447 4287053 4286202 4288876 - gene protein_coding_gene FALSE TRUE AT1G12600.1 similar to ATUTR2/UTR2 (UDP-GALACTOSE TRANSPORTER 2) [Arabidopsis thaliana] (TAIR:AT4G23010.1); similar to hypothetical protein LOC664769 [Danio rerio] (GB:NP_001035084.1); similar to Os03g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048771.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) -0.441758565474284 -3.25798152309164 0.00773037423598113 1 3.02873556751233 4.34098029927249 -0.441758565474284 0.179309226255237
AT3G02300_at 7.48860707186981 7.70285497852632 7.90751859572816 7.81378948082868 8.27838689267173 7.89058788934616 8.04009611780906 7.56892963651285 6.70133928563307 7.83579558211823 8.10909519506472 7.9564903773498 7.59454625285343 7.93408735360999 7.64064326972399 8.42572559340326 7.93580733006825 7.25831984825412 7.77591999582076 0.192696752617448 0.188269056797339 0.189539374696036 0.191322943247676 0.199885454129262 0.205961872709817 0.196249116720304 0.20447576984845 0.218863863755500 0.186510690357148 0.191231753297564 0.19128050474557 0.196911051085282 0.199578374823530 0.200498913452405 0.186510690357148 0.219300435972604 0.198432216244579 0.195964244176970 3 3|0 +|/ 463068 463735 463349.5 461155 464180 + gene protein_coding_gene FALSE TRUE AT3G02300.1 regulator of chromosome condensation (RCC1) family protein similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to putative chromosome condensation regulator [Oryza sativa (japonica cultivar-group)] (GB:AAN08220.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96895.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) 0.345801605740551 3.2576731079138 0.00773458882715606 1 3.02825440568817 15.4836085114441 0.345801605740551 0.113092676948542
AT4G02980_at 6.95900403680259 7.1898654241549 6.8438528324947 6.93562545060369 6.77298420051485 6.60061269198273 6.87814585209696 6.5650346386578 5.23682738466477 5.50676145576927 6.11771401720963 6.10102281001312 6.08107260068201 5.758670750751 6.60661550945177 6.19124257138326 6.48029708051776 6.01194517725885 5.6163305911349 0.194980540120880 0.188571253003516 0.190446325001447 0.185891708007467 0.190517462629544 0.182933231821631 0.185711299570313 0.186106782248277 0.192095323234731 0.186237880199526 0.196580170730809 0.182933231821631 0.189874195149994 0.193173539111103 0.194157610309978 0.182933231821631 0.199052907663059 0.188291881571077 0.203143779990121 4 4|0 -|/ 1319962 1321425 1320733.222 1319656 1321477 - gene protein_coding_gene FALSE TRUE AT4G02980.1 ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1) auxin binding protein involved in cell elongation and cell division Identical to Auxin-binding protein 1 precursor (ABP) (ERABP1) [Arabidopsis Thaliana] (GB:P33487); similar to resistant endoplasmic reticulum auxin-binding protein 1 [Sinapis arvensis] (GB:AAG24497.1); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Auxin-binding protein; (InterPro:IPR000526); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.302761196719855 3.25493398401268 0.00777212271061923 1 3.0239808309 12.6540801618376 0.302761196719855 0.0753274495744737
AT4G39780_at 5.52683691046495 5.72587846801408 5.85046159080257 6.23129954521497 5.92479404207883 6.34919958720008 5.99925189471855 6.51749938633429 4.49572512274003 4.91560739026056 4.96083742201918 4.9521099097276 5.95726134797905 5.44295881529346 5.02848612073583 6.01267734713962 6.11796476766314 5.04231540554235 5.07473360612397 0.236712134448277 0.244465962116295 0.240625513109513 0.234191962008674 0.234085918766437 0.241512405183169 0.237282915266725 0.238601488497932 0.25201631473056 0.235612454490352 0.235221612210368 0.23365456685702 0.234227774940437 0.243070349832093 0.23365456685702 0.236281488587703 0.237313174852756 0.242006105228917 0.238947625802471 4 4 - 18458266 18458771 18458490.273 18457951 18459174 - gene protein_coding_gene FALSE TRUE AT4G39780.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to AP2 domain-containing transcription factor [Arabidopsis thaliana] (TAIR:AT2G22200.1); similar to DREB2 [Glycine max] (GB:AAQ57226.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.378604856039409 3.25384106061482 0.00778715065618059 1 3.02227553528370 11.1496602272972 0.378604856039409 0.137723205312881
AT2G20160_at 1.12869808968973 1.07690782830626 1.44025498817486 1.84827537018021 1.28137731292246 1.48388489461046 1.44671871793851 0.835938490967863 0.946741060462295 1.48153171684573 1.64312421497136 1.16026563111212 1.65257687892216 1.53545984894347 1.29864041601541 1.46609420093250 1.65136239695769 1.69242019609279 1.05862116838043 0.187121469495858 0.186709870051090 0.186503853714138 0.18975442547327 0.187423997974862 0.187552828134506 0.184126562871738 0.184475271217223 0.185292025872812 0.184039381965249 0.184870698950080 0.197197651452039 0.187418943997483 0.184601256390013 0.191755882998334 0.192843689865889 0.188915614157334 0.201109614676034 0.19280115807841 2 2 - 8706862 8707158 8706992.545 8706753 8707205 - gene protein_coding_gene FALSE TRUE AT2G20160.1 MEO (MEIDOS); ubiquitin-protein ligase similar to ASK16 (ARABIDOPSIS SKP1-LIKE 16), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G03190.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85603.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.370788675421844 3.25367318489612 0.00778946160703922 1 3.02201359169441 2.65515243904359 0.370788675421844 0.132160371531283
AT1G27690_at 6.20604249718732 6.6361037044729 5.69546269844206 5.9219641874491 6.4330799751211 6.4935033355809 6.19599734422046 6.68357101444899 6.30117071310999 5.9893899045181 5.8727227477027 5.85881324927574 5.89011610480873 6.08067092384069 5.88958269043456 6.1660706812891 5.61604900395669 5.78180207465226 6.63175121613415 0.232900533705037 0.22406513023797 0.239631515659946 0.238157207628814 0.22406513023797 0.23514909341902 0.229662119448195 0.22406513023797 0.243653965366978 0.227849475581811 0.22406513023797 0.22406513023797 0.232964651259312 0.22406513023797 0.228774453130745 0.230034620896134 0.232579764598399 0.228979264960779 0.229878037232868 1 1 + 9637638 9638237 9637991.727 9636581 9638564 + gene protein_coding_gene FALSE TRUE AT1G27690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19540.1); similar to Protein of unknown function DUF620 [Medicago truncatula] (GB:ABD33276.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) -0.353692467179908 -3.2526373126907 0.00780373672683595 1 3.02039724121760 12.3841734508233 -0.353692467179908 0.119600009130072
AT1G54500_at 10.4351431369792 10.7758212088144 10.0475705088380 10.4966345493842 10.6589134849295 10.1244341550290 11.1968010986279 11.4743172185658 11.3302308446762 11.3595241917960 11.3711160493772 11.2891434764347 11.0466431851195 11.4419003003538 11.1579945859701 11.1262771543442 10.8983600420003 11.2469390238581 11.2996036573291 0.115578859841355 0.109873496068426 0.126618980138272 0.114243388637843 0.108883962260658 0.134469280827293 0.111061431896106 0.108883962260658 0.120809595191109 0.109886461356227 0.115055810654642 0.109991331609266 0.111764250279558 0.111794511855488 0.118887599470071 0.108883962260658 0.116658744144710 0.111835472166675 0.112518878946727 1 1 - 20360770 20361250 20360993.455 20360621 20361455 - gene protein_coding_gene FALSE TRUE AT1G54500.1 rubredoxin family protein similar to putative rubredoxin [Musa acuminata] (GB:ABI23729.1); similar to Os08g0323400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061541.1); contains InterPro domain Rubredoxin; (InterPro:IPR001052); contains InterPro domain Rubredoxin-type Fe(Cys)4 protein; (InterPro:IPR004039) -0.385560997643266 -3.25200190413966 0.00781250633333326 1 3.01940573479963 21.9147458993707 -0.385560997643266 0.142746855250853
AT2G19620_at 3.47423937943606 2.87223111190864 3.05099356772498 2.85601541327568 3.20989337466857 3.41155905746194 4.22412344037045 3.77991851647119 5.27678120043636 4.75748963799647 5.69001145322614 4.55334115760175 4.65859586383304 4.64342275909973 4.80975522160019 4.43319184616471 4.65594741059908 4.61446489821785 5.14515914772955 0.217228656962084 0.218339531246982 0.220858272721051 0.227645726452073 0.216799497577044 0.217362086938846 0.221169226750656 0.217054741573684 0.226977012221641 0.221722370072346 0.223403950773205 0.216309063668481 0.218778412298065 0.218665532475648 0.221046951511785 0.217404484327072 0.230176139673112 0.216333116606836 0.215288262542678 2 2|0 -|/ 8493260 8494146 8493566.5 8493073 8495802 - gene protein_coding_gene FALSE TRUE AT2G19620.1|AT2G19620.2 Ndr family protein similar to Ndr family protein [Arabidopsis thaliana] (TAIR:AT5G56750.1); similar to Os02g0224800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046336.1); similar to SF21C1 [Helianthus annuus] (GB:ABB79742.1); similar to Os01g0192600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042278.1); contains InterPro domain Ndr; (InterPro:IPR004142) -0.378990713929218 -3.25047448501864 0.00783362814176027 1 3.01702222126690 8.26844739350482 -0.378990713929218 0.138272462899172
AT4G28150_at 3.46626908803671 4.42729732510923 2.82460918288151 2.73500421131505 2.98349259387343 2.66802778624293 2.44573031189497 2.62306663458095 3.52205451366902 3.11289191919327 2.82181373769944 3.13459083217794 2.38900855718378 2.92149553084492 2.77334356602575 2.75556244259457 2.29455051496372 3.27812089317584 3.07498602899510 0.244568018570342 0.248407701620202 0.254681238067601 0.245689727841825 0.240873307134308 0.246020790547262 0.240205603162775 0.249453955493421 0.252019125567180 0.248029303082078 0.247927056967073 0.24464947655079 0.245766195772562 0.247021439698985 0.240205603162775 0.240492843857709 0.248362841298681 0.247462219990090 0.244500591019071 4 4 - 13977650 13978550 13978096.818 13977309 13979012 - gene protein_coding_gene FALSE TRUE AT4G28150.1|AT4G28150.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03420.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO39871.1); similar to Os10g0494000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064942.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46235.1); contains InterPro domain Protein of unknown function DUF789; (InterPro:IPR008507) -0.439195395473225 -3.24981814257109 0.00784272218784227 1 3.01599796900481 6.0380395983847 -0.439195395473225 0.178386585739274
AT1G04120_at 6.59912193623676 6.93262337699214 6.75845076533458 6.65912134917968 6.78483284295362 5.93770455688421 7.14834857135842 6.99002713492476 6.1426182944491 7.10955617327684 6.54391362757591 6.99332486116149 5.7898172657901 6.04680397536339 5.26621117546428 6.38534998529712 6.38772106937551 6.15786900049338 6.66153476057834 0.218217646734283 0.218745779309903 0.219669870532107 0.224082206155990 0.218785242101067 0.221617505416632 0.226231790801678 0.212250150610684 0.220084674037847 0.212250150610684 0.212250150610684 0.219387642906658 0.219817565415917 0.216288969528576 0.223910830533622 0.221024441936422 0.233768238443834 0.221616651930925 0.21564327806158 1 1|0 -|/ 1064863 1065642 1065258.25 1064453 1070926 - gene protein_coding_gene FALSE TRUE AT1G04120.1 ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) member of MRP subfamily Identical to Multidrug resistance-associated protein 5 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 5) (ATP-energized glutathione S- conjugate pump 5) (MRP5) [Arabidopsis Thaliana] (GB:Q7GB25;GB:O65619;GB:Q56ZX0); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP8 (Arabidopsis thaliana multidrug resistance-associated protein 8) [Arabidopsis thaliana] (TAIR:AT3G13090.1); similar to ATMRP9 (Arabidopsis thaliana multidrug resistance-associated protein 9) [Arabidopsis thaliana] (TAIR:AT3G60160.1); similar to multidrug resistance-associated protein [Thlaspi caerulescens] (GB:BAD11207.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59598.1); similar to putative MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAB62557.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.412014791163138 -3.24959759390791 0.00784578044461381 1 3.01565378736802 13.1434185398163 -0.412014791163138 0.160836743324319
AT1G55560_at 1.48408920769676 1.21975444298957 1.05797926659117 1.02967507650305 0.856999233636718 0.91441524337524 1.44020262023847 0.937201946666819 2.6195501422166 1.00375462090516 0.844854693591254 0.988063273206552 0.9298177848363 1.18616724941495 1.14153515046224 0.912455158446564 1.51924342985181 1.44891359328662 0.789759973578968 0.219604418812852 0.216611402660669 0.221478789762538 0.219342262724689 0.219406123826322 0.219656225520115 0.215435493006137 0.221550015512763 0.22806680890529 0.218309147683831 0.221654644879171 0.220176498963631 0.215626690466052 0.224071497383138 0.219192891223218 0.215435493006137 0.220646306379869 0.220385871428304 0.225871863595045 1 1 - 20758167 20758801 20758457.182 20757987 20760320 - gene protein_coding_gene FALSE TRUE AT1G55560.1 SKS14 (SKU5 Similar 14); copper ion binding / oxidoreductase similar to SKS12 (SKU5 Similar 12), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G55570.1); similar to SKS13 (SKU5 Similar 13), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G13400.1); similar to SKS11 (SKU5 Similar 11), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G13390.1); similar to Bplo [Brassica napus] (GB:CAA47176.1); similar to L-ascorbate oxidase homolog precursor (Ascorbase) (GB:Q00624); similar to Bplo [Brassica napus] (GB:CAA47177.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.327592568317282 -3.24909160569337 0.00785280136451559 1 3.01486414704887 2.41374106498086 -0.327592568317282 0.0989564444666337
AT3G23690_at 6.98842267630947 7.41804522057251 7.17032693804208 7.12732513347808 7.8139393588411 7.53779362939847 7.25551704807349 6.89024616034508 7.92072372859756 7.3234762021401 8.18473985493542 7.8592843548156 7.92355580218182 8.08471267617244 7.82994008085008 7.98009292667007 7.61344962963295 7.98695669453718 7.33943776648449 0.155245213366938 0.151526512502192 0.15521871745545 0.153072709626176 0.145046197989495 0.166514569304802 0.145441506002143 0.150088772173732 0.143990194028257 0.153280698307222 0.145077888967275 0.148705298760657 0.153895596381593 0.151886184466070 0.151623568630706 0.143990194028257 0.157433197106515 0.144744101629150 0.146898628648121 3 3|0 -|/ 8529081 8529941 8529467.778 8528639 8531019 - gene protein_coding_gene FALSE TRUE AT3G23690.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G48560.1); similar to Os01g0915600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045188.1); similar to bHLH transcription factor, putative [Brassica oleracea] (GB:ABD64920.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.339625379340932 3.24902160095807 0.00785377323018926 1 3.01475489720976 15.0055623880734 0.339625379340932 0.108915052753165
AT1G65170_at 1.88222276686861 1.50943950434365 1.81969676012321 2.0468787570195 1.11548200690115 1.44578499435481 1.49540124585819 1.57561251951052 1.76984395547759 2.32995941565693 1.39879240479018 0.803982580404332 1.51894696734792 1.08463663365729 1.22155142164078 1.28771240812044 1.82625366398210 1.65095768651083 1.86431030774915 0.179920069702282 0.180080537358604 0.182166109928697 0.183524150374718 0.181764330328976 0.179920069702282 0.184504173974888 0.184365296346787 0.193028557809929 0.181626678327958 0.180385474261405 0.185757573394997 0.192161891727908 0.188812597771033 0.179920069702282 0.179920069702282 0.188040995411496 0.189933670986007 0.181862452450388 1 1|0 +|/ 24213649 24214752 24214372.3 24213276 24214779 + gene protein_coding_gene FALSE TRUE AT1G65170.1 ubiquitin carboxyl-terminal hydrolase family protein similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G65160.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); similar to Os03g0165600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049069.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.323821025850031 -3.24860129146106 0.00785961090312505 1 3.01409895376501 3.27988587625643 -0.323821025850031 0.0957467732737182
AT1G17070_at 5.2282173792669 5.57706920736797 4.29070688579625 5.15123263867143 4.67013106497532 4.89053427359432 5.09093880022347 5.20739244114726 4.52262701328787 3.84499260030122 3.80526715713712 3.90265846019068 4.29666054040739 3.87656848837456 4.13929298897818 4.25821856346332 3.97859719515451 4.51323872300523 4.86600815831535 0.220559686610605 0.234177390967705 0.236127829397486 0.224679856621403 0.225470155808222 0.250118424887615 0.231412583647617 0.224662055714927 0.228988326724867 0.230739968530439 0.230780421749873 0.220559686610605 0.227462018174492 0.223386892808328 0.236641018585667 0.229628038047514 0.231562510075907 0.234929966131879 0.22759273675238 1 1 + 5839628 5840125 5839833.182 5837583 5840325 + gene protein_coding_gene FALSE TRUE AT1G17070.1 D111/G-patch domain-containing protein similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42330.2); similar to PREDICTED: similar to Tuftelin-interacting protein 11 isoform 1 [Canis familiaris] (GB:XP_534724.1); similar to Os12g0615800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067277.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.420074866977336 -3.24652974425606 0.00788844723296363 1 3.01086591199896 9.26703884732554 -0.420074866977336 0.166379364871410
AT3G44760_at 0.868331069439475 1.70103907756635 1.24707469735507 0.964446909637046 0.594466757346354 1.15366165307893 1.03351820334562 1.33188519457487 1.97571077563559 1.83500761006531 0.97269023892776 1.01868827061702 1.38668567746627 1.18217393448920 0.815309944453937 1.51637064926320 1.0496690481505 1.20443923577994 1.60742150752700 0.213454486303197 0.212888883389146 0.212661590266618 0.213155997940418 0.213288634347280 0.214299010672692 0.214344109985059 0.215260041905096 0.212808871548832 0.221890058927106 0.214884448628903 0.219893732787804 0.214538165422356 0.218115277909360 0.217044766717555 0.212052252059629 0.218815103425319 0.220521749288006 0.212052252059629 3 3 + 16316691 16317033 16316866.455 16316309 16317365 + gene protein_coding_gene FALSE TRUE AT3G44760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44770.1) -0.453287069029859 -3.24590246178965 0.00789720036232597 1 3.00988687195852 2.58645294827769 -0.453287069029859 0.187587015847966
AT2G47970_at 8.09833674206484 8.06059684998223 7.875576632078 7.83367668369447 7.91619123265139 7.98841135865299 7.31801705186643 7.81094907212755 7.50778039014153 6.738686983277 7.55701899809293 7.52141622416777 7.45251714544147 7.75132900894056 7.5800350534033 7.77570554412792 7.59815434013435 7.47275182951111 6.88242066628369 0.130317627222356 0.131000543624829 0.138869410999353 0.131871431345268 0.131754352160629 0.137019214540182 0.138216823336452 0.134508787599688 0.132863248558280 0.148228892393877 0.132962019615458 0.128009348869194 0.128292892340657 0.131015713282252 0.133904967293477 0.127841873857199 0.131561457502763 0.133734346320113 0.146670841353892 2 2 + 19637242 19638008 19637558.818 19636544 19638252 + gene protein_coding_gene FALSE TRUE AT2G47970.1|AT2G47970.2 NPL4 family protein Identical to NPL4-like protein 2 [Arabidopsis Thaliana] (GB:O82264;GB:Q3E6N3); similar to NPL4 family protein [Arabidopsis thaliana] (TAIR:AT3G63000.1); similar to Os01g0377700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043084.1); similar to Nuclear pore complex, rNpl4 component (sc Npl4) (ISS) [Ostreococcus tauri] (GB:CAL51738.1); contains InterPro domain NPL4; (InterPro:IPR007717)|similar to NPL4 family protein [Arabidopsis thaliana] (TAIR:AT3G63000.1); similar to Os01g0377700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043084.1); similar to Nuclear pore complex, rNpl4 component (sc Npl4) (ISS) [Ostreococcus tauri] (GB:CAL51738.1); contains InterPro domain NPL4; (InterPro:IPR007717) 0.313571192917820 3.24573388061561 0.00789955443812445 1 3.00962375278117 15.1785088018288 0.313571192917820 0.0867654093807653
AT3G63460_at 5.02353546610307 4.72660726174729 4.88598852919851 4.45554408115773 4.35138328420474 4.09695466594644 3.94708681022095 3.86977704224855 4.36225002068319 4.28011752935654 4.86558398311053 5.0378608850964 5.20920457827756 4.76716669064169 5.0397720852275 5.01298314682369 4.99227153354129 4.40424510982597 4.29158601576821 0.179304568705924 0.172556951686094 0.176602493994824 0.175933619091956 0.173385654179112 0.170093248507290 0.175415036268391 0.172288798398440 0.176170873831858 0.172325838246948 0.171972939091056 0.174890665882857 0.172567457268660 0.174898696903377 0.170093248507290 0.170823386841621 0.173072247386904 0.174625085500317 0.18240829613455 3 3 - 23442021 23442693 23442444.182 23441619 23448319 - gene protein_coding_gene FALSE TRUE AT3G63460.1|AT3G63460.2 EMB2221 (EMBRYO DEFECTIVE 2221) similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G18830.1); similar to Sec31p [Oryza sativa] (GB:BAB47154.1); similar to Os07g0657200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060510.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680)|similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G18830.1); similar to Sec31p [Oryza sativa] (GB:BAB47154.1); similar to Os07g0657200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060510.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.330267070672828 3.24556600948008 0.00790189930911013 1 3.00936174026194 9.0333365710221 0.330267070672828 0.101522707450008
AT2G42030_at 6.9178612556969 7.09410771610057 6.33448758199653 6.72058247877097 7.54825195153809 7.20412208511454 7.14371234625162 7.69412453445156 7.6357567513404 6.90189710674205 7.34673406593505 6.87020828638683 7.0921171518246 7.50896698570378 6.52559434522769 6.87123456111639 6.92805175783788 6.23696170610459 7.68417392304287 0.206727102752312 0.200738949490051 0.225285325220174 0.200347512749367 0.196169422320125 0.203940979050135 0.197431540306768 0.203788842202429 0.2163917107378 0.198684550782432 0.204154728125723 0.198169982588046 0.211281987605950 0.200327997577798 0.222601350904935 0.202405262413413 0.219708916766103 0.208857749677395 0.199731117154107 2 2 - 17546165 17546653 17546438.818 17545986 17548044 - gene protein_coding_gene FALSE TRUE AT2G42030.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G58030.3); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE94537.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.372691379147402 -3.24531248495769 0.00790544195439653 1 3.00896603736930 14.2470360110195 -0.372691379147402 0.134216251180115
AT1G58070_at 1.73398110889935 1.80193500169524 1.97582428380595 1.85677985610125 1.59265370365354 2.00780860978374 1.65000191544582 1.15360079718033 1.88658963727456 1.99397744676406 2.49653020024247 2.7715924557675 2.04722172915611 1.94847840017028 2.74669998405137 2.13260817030717 1.7979551726033 2.28648319743398 1.69804200028266 0.185332074186649 0.179418865677258 0.185522638606576 0.183288937207817 0.183538085158395 0.184104228767546 0.186581722097422 0.184863404199973 0.189294515877299 0.189763111479275 0.185385890970634 0.184810804335999 0.187722925837324 0.189157789477031 0.195271438962068 0.187608757640681 0.180256429609355 0.183658125915533 0.186261051727298 1 1 + 21506908 21507443 21507197.091 21506570 21507740 + gene protein_coding_gene FALSE TRUE AT1G58070.1 similar to Os11g0195800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067427.1); similar to hypothetical protein LOC_Os12g08160 [Oryza sativa (japonica cultivar-group)] (GB:ABA95958.1) 0.346148354903515 3.24436591282335 0.0079186832569684 1 3.00748858947522 3.79056442214913 0.346148354903515 0.114472353791981
AT1G73030_at 9.86854850619908 10.0786123556420 10.1162491508021 10.0943189623418 10.3712603726982 10.0706438843845 9.77962265400768 9.74182711054637 9.82942636050401 9.51957052627763 9.93181971966535 9.76240064058704 9.92567867707767 10.0126691827613 9.81695126598012 9.91887059528588 9.76623223071082 9.81435348867048 9.39669886077203 0.103146688573356 0.0995421110337743 0.104745868018226 0.104170802500033 0.101741810624764 0.107415746781146 0.104154012582821 0.101228210571118 0.103238921382890 0.101998762753614 0.09845607586707 0.100858315891225 0.0983871187034868 0.102002482581436 0.100885135798168 0.097156906188687 0.103530863240170 0.0997236621226211 0.100353196338991 1 1|0 +|/ 27477745 27478468 27478094 27477487 27478783 + gene protein_coding_gene FALSE TRUE AT1G73030.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G17730.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.291344414266141 3.2436114882316 0.00792925284145249 1 3.00631101789064 19.7403956533828 0.291344414266141 0.0639147197289433
AT1G48910_at 1.73762140054261 1.94193946271861 1.72717478926212 2.04194324976693 1.62537574407756 1.51781051354097 2.34153518280254 2.04817217879569 2.27864538472438 2.08975712358458 1.81098752785685 1.69508428738918 1.74894147610088 2.28931974202997 1.44353359158012 1.86604837808469 2.43730937377333 2.08171962304731 2.39365692546754 0.209402753469419 0.203682798106188 0.206369601457450 0.202948919750958 0.202900571828827 0.205383276609516 0.209391347282952 0.211247368625549 0.202900571828827 0.214178801039554 0.202900571828827 0.208032828859958 0.209152205927080 0.211619968311929 0.209640232103317 0.215801890560651 0.219502013576544 0.209205475543242 0.216933926323944 1 1 + 18095905 18097382 18096803.8 18095349 18097442 + gene protein_coding_gene FALSE TRUE AT1G48910.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G21430.1); similar to Os12g0189500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066335.1); similar to hypothetical protein, similar to flavin-containing monooxygenases [Oryza sativa] (GB:AAF34433.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Monooxygenase, FAD-binding; (InterPro:IPR002938); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.310821396664505 -3.24207045280849 0.00795088761447822 1 3.00390553861912 3.96051547080919 -0.310821396664505 0.0845061885955377
AT4G18300_at 3.43648404851099 4.53365508157071 4.64529995234478 4.32403276337977 4.54069291559501 4.36899390323698 3.53058821403055 3.81864321821079 2.91324078586724 2.93349401352438 2.82725477570082 3.38228994273484 3.25577368856801 3.46389856673023 3.06673501053357 3.74610974222166 3.59790567203085 2.85324625314032 2.99875470047576 0.194195747468103 0.198720190683551 0.206006887043296 0.201640728196705 0.204247251798160 0.200012391489103 0.195976204715795 0.200692161405760 0.206414417229398 0.199763960842234 0.194195747468103 0.197036121043462 0.201347425718286 0.199702951439739 0.205223363086684 0.194195747468103 0.199393456272035 0.194663342781709 0.194422646171279 4 4 + 10120405 10120823 10120632.182 10118863 10120992 + gene protein_coding_gene FALSE TRUE AT4G18300.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G02270.1); similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G34970.1); similar to hypothetical protein DDBDRAFT_0185388 [Dictyostelium discoideum AX4] (GB:XP_639192.1); similar to Os02g0812400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048478.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) 0.482783724780061 3.24074105451945 0.00796959948267746 1 3.00183031006095 7.26112286531661 0.482783724780061 0.206178717895733
AT3G13750_at 12.5234868252640 12.6243663981390 12.9914097637179 13.0787735959562 13.5110376457027 13.4141468139661 12.2887075207625 12.223664026409 12.4923704402890 12.6765422820748 12.1509628097547 11.8453636356565 12.5985387099645 12.4296620562530 11.8333992714177 12.381303212858 12.8029289566775 12.5824285385698 12.7001133010004 0.0633199728479131 0.0617446570638693 0.0635910082777023 0.0622405962609206 0.0630225572645546 0.0704622963050149 0.0617446570638693 0.0617446570638693 0.064677829943371 0.0625141069431659 0.0638373239353095 0.0617446570638693 0.0619591472496785 0.0620119167283016 0.0631831057921953 0.0617446570638693 0.0639787839041398 0.0617446570638693 0.0617446570638693 3 3 + 4515024 4515733 4515396.364 4510972 4516305 + gene protein_coding_gene FALSE TRUE AT3G13750.1 BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Lycopersicon esculentum] (GB:AAF70822.1); similar to beta-galactosidase [Fragaria x ananassa] (GB:CAC44500.1); similar to Beta-galactosidase precursor (Lactase) (Acid beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) (GB:P48980); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) 0.269425243315668 3.24066196265974 0.00797071414786925 1 3.00170684238229 25.3074901104140 0.269425243315668 0.0306788469491636
AT4G33800_at 0.741532021805426 1.52432983913585 1.36498690996882 1.50135181726706 0.980129006328464 0.868566241505987 1.57473919048411 1.42787901742707 1.76681809346038 1.56996856893540 1.02599933218277 1.02894465377882 0.994568183568364 1.24240355173002 1.0620135253758 0.874763082459862 0.840651577520666 1.48861904939974 1.74825283507342 0.218031870501989 0.215851385110173 0.218166035205625 0.213320786407312 0.218741550510561 0.222991345813758 0.225041014728753 0.214128984159829 0.218387743762927 0.221685640258410 0.213641084705283 0.213320786407312 0.216291643920619 0.217467303407101 0.217448477501049 0.214998239538937 0.221537314834738 0.229057184375957 0.221788128380109 4 4|0 -|/ 16210580 16211275 16211026.889 16210012 16211414 - gene protein_coding_gene FALSE TRUE AT4G33800.1 similar to Os03g0199500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049286.1) -0.381814659883298 -3.23951583173811 0.00798688474358715 1 2.99991761725950 2.63031852315288 -0.381814659883298 0.141162331517732
AT3G11530_at 8.0192052932098 8.15208903473459 8.02354133297799 8.21145921097454 8.73658201667638 8.46254020392664 8.12070060964007 8.00047783141257 7.50128865395947 7.5263741646156 7.8730421559098 8.01220172823355 7.99117667161446 7.86091100014152 7.44472357137713 7.87287580209027 7.60258500481113 7.93939546398498 7.54935628248234 0.200662941372674 0.183891610773341 0.198554888119617 0.194092236039539 0.18942051896635 0.196117807065243 0.189804972280042 0.184272451148855 0.202481733315076 0.189976912373870 0.190804664555052 0.192041407570164 0.198485811127981 0.200654406368684 0.196642699177548 0.19404206647533 0.205260863862715 0.191056185517047 0.193431459835292 3 3|0 -|/ 3628814 3629866 3629049.2 3628573 3630489 - gene protein_coding_gene FALSE TRUE AT3G11530.1|AT3G11530.2 vacuolar protein sorting 55 family protein / VPS55 family protein similar to vacuolar protein sorting 55 family protein / VPS55 family protein [Arabidopsis thaliana] (TAIR:AT1G32410.5); similar to vacuolar protein sorting 55 family-like [Oryza sativa (japonica cultivar-group)] (GB:BAD88257.1); similar to Os01g0966500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045503.1); contains InterPro domain Vacuolar protein sorting 55; (InterPro:IPR007262) 0.292176694987090 3.23938558162766 0.00798872453622531 1 2.99971427928470 15.8909679209221 0.292176694987090 0.0653321235567921
AT3G12170_at 2.87802967502724 2.8334932300983 2.73483465102735 2.6663017760534 2.25063138839894 2.13387492164354 2.76831966634069 2.68143745038430 2.83647281210072 2.69599207701945 2.52118099605004 2.88402640293913 2.69256096306846 2.46222711376762 2.98096052427894 2.6098102045806 2.01245185181878 2.61389291630765 2.83788659714275 0.196785130497353 0.192824616029506 0.201975787528270 0.205620611284590 0.207146305901128 0.195773232074018 0.199823292266895 0.191114953575143 0.205920197562441 0.19167281846859 0.203036670563824 0.191713111010369 0.195046042494992 0.209795226812172 0.191114953575143 0.196755325436636 0.199315452402253 0.195109943020261 0.198983711652763 3 0|3 /|+ 3881792 3882564 3882293.667 3881007 3882811 + gene protein_coding_gene FALSE TRUE AT3G12170.1 DNAJ heat shock N-terminal domain-containing protein similar to ATJ6 (ARABIDOPSIS J-DOMAIN PROTEIN 6), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G06910.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE93759.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.26844380583403 -3.23806789372130 0.00800736126032093 1 2.99765713925599 5.31199336171624 -0.26844380583403 0.0288855356574969
AT2G23090_at 11.7112943566242 11.8518284609467 12.0195471600296 11.9982665234490 11.9837155500041 12.1034941580757 11.5198402864581 11.7340906204050 11.7396174464936 11.7731953534282 11.9992039190505 11.9833226573839 11.9951967516153 12.0550197044767 11.8957363918009 11.963324720483 12.0636954134381 11.9667108466297 11.7472359947935 0.0636415584175524 0.0629430927657881 0.0669898717248525 0.0679430634737406 0.0648227529135136 0.0647693937275869 0.0629430927657881 0.0636417358965705 0.0693583650585967 0.0632664421105241 0.0663291935567484 0.0634368409091368 0.0644978722909374 0.0647323387898178 0.065960115029785 0.0631706900701101 0.0660679451639333 0.0629430927657881 0.0659658129793872 2 2|0 -|/ 9836755 9837320 9836992.9 9836530 9837490 - gene protein_coding_gene FALSE TRUE AT2G23090.1 similar to hypothetical protein [Cicer arietinum] (GB:CAA10129.1) 0.279459559576187 3.23733827993173 0.00801769959203526 1 2.99651804488038 23.7370725889231 0.279459559576187 0.0490855820429832
AT3G22540_at 1.86678201110949 1.92857049867502 2.80531368868259 2.20676521844274 1.63579725413667 1.72444152537632 2.05025426162624 2.39731098602198 1.66032892661627 2.06918567654570 2.27611823273545 2.47645970658757 2.70024248743737 2.92917742656041 2.37032446145523 2.49618909996482 3.0242228806165 2.63891533158879 2.08569906071545 0.212783711976601 0.208136788812336 0.213009252175388 0.219927046495033 0.209078763018492 0.209495339377938 0.211090243018240 0.207101528291471 0.216415115750034 0.20817617742167 0.214217627916687 0.210802169439647 0.210803974564821 0.211008006660912 0.208316048980983 0.207101528291471 0.227422584862264 0.215538753323208 0.214819469305282 3 3 - 7984241 7984460 7984358.545 7984083 7984634 - gene protein_coding_gene FALSE TRUE AT3G22540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14819.1); similar to hypothetical protein MtrDRAFT_AC135320g11v1 [Medicago truncatula] (GB:ABE82963.1); contains InterPro domain Protein of unknown function DUF1677, plant; (InterPro:IPR012876) 0.353950815521927 3.23586409534079 0.0080386296803385 1 2.99421641739320 4.35308480950592 0.353950815521927 0.121185754561643
AT1G28200_at 8.4660372726883 8.57751839609884 8.8077421710776 8.99183156994442 9.39279495208818 8.74194936186604 8.87709967753982 8.75643706479568 8.1418308721401 8.06981600880508 8.6261458116875 8.53056950364502 8.67691775772812 8.51604742406879 8.45725922607895 8.50498221499927 8.14571725781533 8.38300049218165 8.0536286462801 0.161823645354461 0.159657679707759 0.164618462804668 0.163119795524159 0.172866082189640 0.170974738358287 0.161444603239871 0.162183843877941 0.174185138221865 0.161769641190847 0.166544508023216 0.160510751366411 0.163327360096375 0.160233520470556 0.16974190218773 0.159251371832652 0.182914533214514 0.163622568577400 0.161635564185398 1 1 - 9850384 9852083 9851256.909 9850134 9852353 - gene protein_coding_gene FALSE TRUE AT1G28200.1 FIP1 (FH INTERACTING PROTEIN 1) VirF-interacting protein FIP1 similar to GRAM domain-containing protein / ABA-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G22475.1); similar to putative ABA-responsive protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36095.1); similar to Os03g0187600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049211.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain GRAM; (InterPro:IPR004182) 0.352980598123611 3.23580111149095 0.00803952514672245 1 2.99411807883229 17.1106788766460 0.352980598123611 0.120453554271791
AT3G56760_at 4.67912629047654 4.82282232955932 3.75114002251464 3.79072225207734 4.19395263989299 4.60845795600878 4.52890315677787 5.22644189958412 4.88265891115135 4.98005314491077 5.10375398277800 5.52820372224194 4.53074730858273 4.97533356559113 5.05854305072978 5.15859125755482 4.44781346700612 4.66995259386711 5.05587636540004 0.234570580109964 0.224210672911167 0.238196225949303 0.223977413794075 0.221214099142898 0.228804816717459 0.229067653736462 0.225205816290881 0.232576727374005 0.221232307703263 0.221969702242692 0.221214099142898 0.231477069334778 0.226144403964576 0.235577411882699 0.222429057125297 0.234527848003511 0.225133498298127 0.226703999468965 3 0|3 /|- 21031645 21032474 21032014.625 21031537 21034735 - gene protein_coding_gene FALSE TRUE AT3G56760.1 calcium-dependent protein kinase, putative / CDPK, putative similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G19100.1); similar to CRK1 (CDPK-RELATED KINASE 1), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41140.1); similar to putative calcium/calmodulin-dependent protein kinase CaMK [Oryza sativa (japonica cultivar-group)] (GB:BAC16472.1); similar to CDPK-related protein kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96128.1); similar to Protein kinase [Medicago truncatula] (GB:ABD33022.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.383500320043064 -3.23438453799247 0.00805969198443278 1 2.99190628434450 9.40368590621045 -0.383500320043064 0.142766453941866
AT1G13830_at 2.39250963879657 3.21167916529950 3.13223640570486 3.38148735035118 2.45052806444226 2.54284763372487 0.843796959829043 1.38242588030885 1.30976750546462 1.12478820345997 0.792609466381524 1.36363443323949 1.11465526656513 1.15682458898995 1.46441271524582 1.43127926029976 1.24238072506507 1.30093880357377 1.42505314199649 0.362186755506935 0.377544690946989 0.386507738287465 0.374110122608236 0.357179927553214 0.357710708403852 0.353182445047078 0.349599623104465 0.360235175985031 0.356490493751021 0.349599623104465 0.350656710465228 0.363133059641167 0.349599623104465 0.350966151493854 0.352833866922743 0.35346753013967 0.349599623104465 0.354109779603419 1 1|0 -|/ 4740041 4740508 4740250.857 4739872 4741029 - gene protein_coding_gene FALSE TRUE AT1G13830.1 beta-1,3-glucanase-related similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT2G03505.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); contains InterPro domain X8; (InterPro:IPR012946) 0.432988788138504 3.23401602253735 0.00806494673654218 1 2.99133087802596 3.67712798283735 0.432988788138504 0.175785445536528
AT3G17210_at 10.4368781062811 10.6929561619883 10.4595246614653 10.6037632167255 10.7654478076432 10.6765049554490 10.7421956981519 10.7961718159501 10.3658548924922 10.3892161598567 11.0384722501895 11.2705463811495 10.8693072669918 10.6951360379448 11.3468115537084 10.9430135314687 10.9095147088198 10.8880349464257 10.4127584566830 0.101761922830429 0.095391220838239 0.101169272339243 0.098287838117385 0.0953640442946661 0.0984218008573864 0.0956582991207504 0.0990997099215456 0.104704370268013 0.102316398877252 0.0987048403513217 0.0986976387092834 0.0976140738470037 0.098066245723584 0.095401958892320 0.0984914944748765 0.101138933803625 0.09863759948682 0.106343451115492 3 3|0 +|/ 5882337 5882869 5882590.9 5882290 5883206 + gene protein_coding_gene FALSE TRUE AT3G17210.1 stable protein 1-related Identical to Putative Pop3 protein [Arabidopsis Thaliana] (GB:Q9LUV2;GB:Q8LCB1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22580.1); similar to Dimeric alpha-beta barrel [Medicago truncatula] (GB:ABE90962.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097); contains InterPro domain Dimeric alpha-beta barrel; (InterPro:IPR011008) 0.282543898152259 3.23330179118001 0.00807514106915933 1 2.99021564439856 21.3388708467558 0.282543898152259 0.0539544877749131
AT1G79970_at 7.00758937533016 6.81203709526423 6.8328629617786 6.37783195509102 7.30483055901653 6.93617413991166 7.4557907403077 7.30097658001271 6.12784205812115 6.56793214685622 6.96600523670921 7.51373852500871 7.24920124740692 7.51591528364277 7.46598559599329 7.70378092103836 7.59364965803361 7.06199489710147 6.57528159705031 0.170340782273182 0.170999911278147 0.172775563101965 0.177317154390259 0.168481946179245 0.171087599394839 0.169133180827825 0.175608663334903 0.196514343074755 0.181242295986886 0.17839122226287 0.171961990863630 0.183965370071655 0.179106659178357 0.171813294385846 0.172390310636374 0.176782529035745 0.179591954391043 0.17771706362257 1 1 + 30087792 30088449 30088030.636 30086971 30088787 + gene protein_coding_gene FALSE TRUE AT1G79970.1|AT1G79970.2 similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT2G25690.2); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE87128.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE83632.1) 0.339462554747494 3.23273493454922 0.00808324123648469 1 2.98933050912225 13.9072462698187 0.339462554747494 0.110154274449227
AT3G49210_at 5.5741979751475 5.56711838949365 6.06866775108305 6.51743599520984 6.18382814994748 5.09631144836909 2.92616885780925 3.54463356220286 3.57748059158969 2.95046828056437 2.76751636963277 3.3111968816387 2.40718178392973 3.17525220421415 2.69431539885265 2.45333693611380 2.43109341763669 2.19403305851731 3.07196343949911 0.284988376375392 0.281171086715036 0.30287157282313 0.307967079683913 0.288430220246075 0.285824362225324 0.274438213234114 0.278115222440794 0.2852615567061 0.279609547089344 0.278076813233128 0.274438213234114 0.280774545793423 0.277322622574134 0.277191340352211 0.274846722115805 0.289320818033732 0.287457715016607 0.275185827859561 3 3 - 18249207 18250056 18249625.545 18249033 18252222 - gene protein_coding_gene FALSE TRUE AT3G49210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49200.1); similar to condensation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49190.1); similar to Protein of unknown function DUF1298 [Medicago truncatula] (GB:ABE82755.1); contains InterPro domain Protein of unknown function UPF0089; (InterPro:IPR004255); contains InterPro domain Protein of unknown function DUF1298; (InterPro:IPR009721) 0.521400562877483 3.23264494930595 0.00808452785219243 1 2.98918999739749 8.12440102959185 0.521400562877483 0.230015248469940
AT4G30020_at 7.81496981764105 8.0426796436538 5.41506028400675 5.21133821292191 6.98654453138818 7.37181877200225 8.09176055499999 8.0692513907793 7.1900101298383 8.55348609131507 9.55381688057866 10.1179007269511 8.95014739955068 8.93835651589496 10.0586272006822 8.98696900215277 8.30888971547196 9.50286427364487 8.75116220116484 0.211680706261668 0.211680706261668 0.235232678885784 0.245291073229312 0.223274636180143 0.227366459859283 0.212468568273804 0.216519474082008 0.226932691959919 0.21231055059895 0.215849959867612 0.216717635369356 0.211680706261668 0.219337491515373 0.221845610661658 0.213585522902452 0.227485799762626 0.216016961153014 0.214195141373417 4 4 + 14681097 14681721 14681439.545 14677291 14681962 + gene protein_coding_gene FALSE TRUE AT4G30020.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G19170.1); similar to proteinase TMP [Lycopersicon esculentum] (GB:AAB38743.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); similar to subtilisin-like protease [Arachis hypogaea] (GB:AAY54007.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Protein of unknown function DUF1034; (InterPro:IPR010435); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.310582289047803 -3.23215153406405 0.00809158644659811 1 2.98841952313773 15.8589692034935 -0.310582289047803 0.0851839236492792
AT4G04790_at 2.23956480365870 2.58254347610047 2.4723345764736 2.67392585497727 2.38904428073717 2.40356657572948 2.97699347222092 2.81870816250351 2.50460795231015 2.70647555984605 1.93900734686438 2.09150380137788 2.44136391816403 2.10053156847384 2.18841385145906 2.31784313519366 2.74473617851236 1.74829025057300 2.66606197277545 0.201782064625352 0.202049444126916 0.204338344824042 0.197427598539655 0.200636754084197 0.195764755425878 0.207155443248763 0.214374036322720 0.215926037938915 0.203071625091392 0.212849596109781 0.197542343372030 0.193892801879329 0.204111629305652 0.200585384259054 0.198593249101299 0.202011180194790 0.207858571925653 0.203710173748104 4 4|0 -|/ 2435054 2436153 2435640.7 2434905 2439401 - gene protein_coding_gene FALSE TRUE AT4G04790.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21880.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07992.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.299494280979065 -3.23203126258223 0.00809330795146394 1 2.98823171571254 4.98067335928572 -0.299494280979065 0.074139039579866
AT3G58330_at 1.61253108765093 1.54089112024649 1.61956131748648 2.22462398009133 1.14633505993787 1.7222229903324 1.58038763618466 2.09405035193758 2.20846062694835 2.15690798006793 1.07511529274228 1.26934708041504 1.39751878223384 1.73227324870476 1.54399261421972 1.08153977284921 1.14101751788558 1.70891580974627 2.19722227001001 0.23781768288805 0.239977489117171 0.234509285882327 0.236431730033213 0.232090487671729 0.245727502462224 0.234768076568103 0.232090487671729 0.240127092691492 0.232090487671729 0.239518892702658 0.233742747720116 0.233316559736344 0.240229956570278 0.23948802017417 0.234276766866735 0.247662824128496 0.232090487671729 0.240014142145401 3 3 - 21598359 21598939 21598631.909 21598339 21598979 - gene protein_coding_gene FALSE TRUE AT3G58330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58300.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains domain TRAF-LIKE AND MATH DOMAIN-CONTAINING (PTHR10420:SF29); contains domain UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED (PTHR10420) -0.423797244767703 -3.23058442300059 0.00811404652130798 1 2.98597237356283 3.47069809657931 -0.423797244767703 0.170151496162356
AT1G19700_at 6.89114835835296 7.4602854825196 8.42806644708868 8.64061257615147 8.2292866342517 8.17492511236514 8.45744348518598 8.38544953416005 6.62037863154529 7.61235152140443 7.15486222532814 7.16150182095705 8.00855301090112 7.21533110981135 6.73619125873651 7.70940299164974 8.08026521366362 7.0058541062782 7.62219070950964 0.223367696672307 0.223662538895356 0.230557149918191 0.225408158434411 0.226401655023777 0.241389693818237 0.221812128287003 0.221812128287003 0.240168375919830 0.23657612696083 0.233802702862781 0.229075368128363 0.234315255349392 0.243852495372137 0.229017569735741 0.230160200522298 0.224971655972816 0.228741293521028 0.224910078520895 1 1 - 6809972 6810696 6810248 6809735 6812648 - gene protein_coding_gene FALSE TRUE AT1G19700.1 BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor similar to BLH3 (BLH3) [Arabidopsis thaliana] (TAIR:AT1G75410.2); similar to Os12g0636200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067363.1); similar to BEL1-related homeotic protein 30 [Solanum tuberosum] (GB:AAN03627.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.334331286877763 3.22922468443686 0.00813358591704603 1 2.98384894519071 15.4178866227522 0.334331286877763 0.106288707557131
AT4G38340_at 2.32680398282773 2.63213560176432 2.20260020326688 2.09765035807044 2.09434671495549 2.22377850531659 2.53251900432327 3.07355608345368 1.29482579047621 1.84916147746779 1.45526800981868 1.06656546869777 2.31822205897635 1.48723296433117 1.46107855871624 1.76651265601161 2.03628168193710 1.69457796855261 2.42126551734524 0.233525066896485 0.233971094199402 0.235815164936226 0.236521184591618 0.233224864511668 0.235976268106118 0.237199757741582 0.241038134178763 0.245818658117455 0.233333915289474 0.238728779880254 0.234255341688994 0.236089903607018 0.237258967931009 0.235042451995271 0.230705735269776 0.238312910874769 0.230705735269776 0.245368049788516 4 4 + 17957240 17957776 17957543.909 17954704 17957822 + gene protein_coding_gene FALSE TRUE AT4G38340.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20640.2); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.340513281786393 -3.22899370942974 0.00813690977553336 1 2.98348823466505 4.15582464806893 -0.340513281786393 0.111310015812061
AT4G01390_at 7.32138044250842 7.26365762915433 2.93623348866018 2.55198139217828 6.6934156470304 5.60898311234969 2.95806488967615 2.69934683909594 2.74936598602562 3.23885477153062 2.60773001337775 2.42081763501200 2.92109135706903 2.39009660353883 2.73759924558372 2.75965453070235 3.15602936991368 3.07569922998012 3.31600369608554 0.317601586873206 0.317711008499879 0.290564769272909 0.282006763292619 0.313179483203538 0.311277935743811 0.285151114285135 0.278220821594791 0.281831327077980 0.279169275523277 0.279680224654350 0.281971476433591 0.277681946267116 0.281306566105757 0.283481858422632 0.278069277777853 0.285192246079118 0.277389845181140 0.277157808970628 4 4|0 -|/ 570243 570947 570551.2 570242 571483 - gene protein_coding_gene FALSE TRUE AT4G01390.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00780.1); similar to Os12g0489100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066793.1); similar to ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98280.2); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.477888721560405 -3.22840104356511 0.00814544489272535 1 2.9825626636507 7.68413187976223 -0.477888721560405 0.204315239168103
AT3G54390_at 1.82649918362305 1.96322184008719 2.61776820730280 2.28496940093227 2.29408031758395 2.13170852680078 3.17646661243706 3.10448518312110 1.54957839386564 2.70576845987292 2.8558432123353 2.84783189365957 3.25756828651081 3.0516314785162 2.57353181473033 3.00481086773569 3.39255333393155 3.03215291266042 2.42533761009717 0.194977705711836 0.193369974787902 0.186812076665795 0.189494697153842 0.190880027298556 0.194793032333286 0.188129768388107 0.192307173322595 0.198930655699256 0.194290517656126 0.191511156957146 0.196165328504598 0.187968800542367 0.192152220375083 0.186812076665795 0.1907905467833 0.189191912292892 0.195699404264854 0.190305351245509 3 3|0 -|/ 20148928 20149465 20149213 20148719 20150120 - gene protein_coding_gene FALSE TRUE AT3G54390.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G05550.2); similar to Myb, DNA-binding [Medicago truncatula] (GB:ABE94443.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.294779531034632 3.2281477132753 0.0081490959398426 1 2.98216703010131 5.0393425571303 0.294779531034632 0.0694365648674811
AT3G46760_at 1.64625551793547 1.95746289554536 2.06420225952013 2.25903172584841 1.68040866508160 2.00543297933564 1.56873591905447 1.73921887121050 1.77659523559245 1.19736765080523 1.85322380055349 1.79512476289074 1.50447152576505 2.09438524230466 1.7075638283727 2.01626301586480 2.10625261863171 1.7615455503318 1.52257366587370 0.187943744209040 0.183888053286418 0.186356396909308 0.196562512503500 0.184490880540875 0.185335862639169 0.194126513512825 0.190151125728886 0.188288210312824 0.189420180839752 0.187353411548097 0.187841444342009 0.190772649934501 0.189694411286340 0.188311084902355 0.191697813296673 0.188163152285244 0.193285621234141 0.186177217918980 3 3 + 17233477 17233998 17233795 17233012 17234025 + gene protein_coding_gene FALSE TRUE AT3G46760.1 protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G59270.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.315179441087786 3.22803624496353 0.00815070297124663 1 2.98199294561518 3.54194325944803 0.315179441087786 0.0898408407296849
AT4G02570_at 9.66127167559906 9.59724243861872 9.88792938269737 9.9145733379505 10.0420256123928 9.62697135904982 9.56199011585784 9.48952014920753 8.96012042654281 8.98025198680386 9.3070767844134 9.31653700042723 9.30606260061603 9.29411702567235 9.25396572006398 9.2388021051868 9.24117051272636 9.1091110284143 8.9125562236993 0.137892094298266 0.132824553106245 0.132645839202802 0.136903547796287 0.129489302366156 0.133760212239868 0.131297570005725 0.131578989171793 0.135372077959421 0.128477029795148 0.129821876696112 0.126709382332505 0.13207985885806 0.125771239997609 0.129427795109911 0.129853300220635 0.139352690437408 0.127132259031885 0.135778904303575 4 0|4 /|+ 1132760 1133149 1132923.875 1128618 1133696 + gene protein_coding_gene FALSE TRUE AT4G02570.1|AT4G02570.2|AT4G02570.3 ATCUL1 (CULLIN 1) Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. Identical to Cullin-1 (CUL1) [Arabidopsis Thaliana] (GB:Q94AH6;GB:O22770;GB:Q56W31); similar to CUL2 (cullin 2) [Arabidopsis thaliana] (TAIR:AT1G02980.1); similar to cullin-like protein1 [Pisum sativum] (GB:BAC10548.1); similar to Cullin [Medicago truncatula] (GB:ABE84307.1); similar to cullin 1-like protein C [Petunia inflata] (GB:ABB77428.1); contains InterPro domain Cullin; (InterPro:IPR001373) 0.298873981521621 3.22783569703887 0.00815359506989657 1 2.98167974032646 18.8273562886911 0.298873981521621 0.07389486280278
AT4G00650_at 3.22227161033396 2.99148286983535 3.42177324295492 3.29552385761515 3.36634812088447 3.29367520317380 3.13494315285384 3.00415662273705 2.83788577400107 2.47812590420189 3.25895512006284 2.73969811961159 2.68586790449177 2.78549996700806 3.14964009714906 2.66629705288862 3.37077687554704 3.37124029770327 2.77731910374655 0.200566304368328 0.204291198794977 0.203704451754789 0.201215053667603 0.204072424530793 0.205899461882388 0.200566304368328 0.200812982639243 0.200819900168288 0.200566304368328 0.201515043700557 0.203563903321202 0.208159879155149 0.206907256465534 0.206526164846473 0.20907715005576 0.200566304368328 0.201594233234607 0.207092340611873 4 4 + 269390 269933 269668.909 269026 271503 + gene protein_coding_gene FALSE TRUE AT4G00650.1 FRI (FRIGIDA) Encodes a major determinant of natural variation in Arabidopsis flowering time. Dominant alleles of FRI confer a vernalization requirement causing plants to overwinter vegetatively. Many early flowering accessions carry loss-of-function fri alleles .Twenty distinct haplotypes that contain non-functional FRI alleles have been identified and the distribution analyzed in over 190 accessions. The common lab strains- Col and Ler each carry loss of function mutations in FRI. Identical to Protein FRIGIDA (FRI) [Arabidopsis Thaliana] (GB:Q9FDW0;GB:O65274); similar to FRL2 (FRIGIDA LIKE 2) [Arabidopsis thaliana] (TAIR:AT1G31814.1); similar to FRIGIDA [Allium sativum] (GB:AAS68532.1); contains InterPro domain Frigida-like; (InterPro:IPR012474) 0.280918272104157 3.22779282493697 0.00815421346333746 1 2.98161278464105 6.06690876336071 0.280918272104157 0.0523726487112424
AT3G01700_at 0.932500115802967 0.681125897112768 0.66723941443455 0.679099204137857 0.806298836728581 0.961802646823386 0.920895672785336 0.99395746018538 2.36135024200297 1.12007832804091 1.30932934967658 0.88607136041277 0.949135817437468 0.746020067610441 1.33365160676281 0.811225791101386 0.946841621675836 0.868426245392155 0.837914323363261 0.206962420297283 0.202678019574793 0.209001443990214 0.199336562349014 0.197980217301929 0.198361491524082 0.200450814956709 0.205111964212071 0.198762620989878 0.205783935944565 0.198379470961608 0.199738738252695 0.199798700888858 0.203968821569403 0.201063413437939 0.200566449166765 0.214110759188916 0.205263423812091 0.203944205696161 3 3 + 258988 259331 259173.636 258886 259638 + gene protein_coding_gene FALSE TRUE AT3G01700.1 AGP11 (ARABINOGALACTAN PROTEIN 11) Identical to Classical arabinogalactan protein 11 precursor (AGP11) [Arabidopsis Thaliana] (GB:Q9FVE0;GB:Q9S7N4); similar to AGP6 (ARABINOGALACTAN PROTEINS 6) [Arabidopsis thaliana] (TAIR:AT5G14380.1); similar to arabinogalactan protein [Brassica napus] (GB:AAC37509.1); similar to arabinogalactan protein [Brassica napus] (GB:AAC37510.1) -0.280976496450442 -3.22550895692848 0.00818722540617635 1 2.97804580567138 2.04092425449022 -0.280976496450442 0.0527317501484781
AT1G55000_at 9.6935445697341 9.92765608405345 9.92082339692262 10.0592634023309 10.3238577951165 10.1499103128276 9.51002837719242 9.77659236156932 9.50113286149844 9.55140050498605 10.0433106446058 9.56322476187348 9.9219702815814 9.76914510387458 9.4289073123415 9.7919579201615 9.83279052339491 9.75323988479105 9.6123795871768 0.130986100151051 0.121194480297358 0.125219109950330 0.125123275470191 0.126341785104916 0.129675034689215 0.124190228393446 0.123700830523108 0.128605318184446 0.126427503186096 0.129420021977220 0.128833855831058 0.125016943395629 0.129856763533026 0.127341572622919 0.123162810757626 0.127930522203384 0.133994491659631 0.126039215089780 1 1|0 +|/ 20518498 20519779 20519127.2 20518301 20520163 + gene protein_coding_gene FALSE TRUE AT1G55000.1|AT1G55000.2|AT1G55000.3 peptidoglycan-binding LysM domain-containing protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95630.1); similar to Os03g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050989.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) 0.29730284909317 3.22548750491422 0.00818753612613766 1 2.97801230031125 19.5792291817842 0.29730284909317 0.072453488795769
AT4G30140_at 0.911092386751118 0.793320558928032 0.712236287053223 0.836342926747632 0.92124219341476 0.989029201933765 0.715954315392375 0.711110479015427 1.11969869271699 0.378220077371278 1.04527360082105 0.942227743825573 0.962815805609107 1.06917825759089 0.584456147983738 1.05948347429505 0.738296983437031 1.18988719521249 -0.0174412430091193 0.22723368163229 0.229972191439048 0.224084364916857 0.228855708049397 0.230950125670960 0.235215426421304 0.225815739982566 0.225233526111162 0.225567038962582 0.227500692578913 0.228641657489130 0.228601306662901 0.229737261971783 0.228388039444245 0.223553747014889 0.230572795405363 0.229778197417378 0.224399028464557 0.223553747014889 4 4|0 -|/ 14738622 14739340 14739045.7 14738393 14740682 - gene protein_coding_gene FALSE TRUE AT4G30140.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G19050.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.268651554668044 3.22503492575357 0.00819409427046982 1 2.97730542277157 1.54501349871617 0.268651554668044 0.0318586081740337
AT2G39780_at 9.71899246244729 9.9436446885787 10.0556505854141 10.168679898658 10.0123434965290 9.74343993463608 9.7091969334094 9.56020433558573 8.83573091182316 9.05637796292703 9.04475744956975 9.10246568605758 9.33586209375826 9.36313984942277 8.99636043732889 9.481457205784 9.4175565987277 9.28101084460162 8.88985348078318 0.126366337305038 0.126128992223820 0.136159516775094 0.124832723313204 0.128272607150071 0.127004813889320 0.121309581560260 0.125076721438635 0.146304055810329 0.120861916913563 0.119732436062225 0.121108962537223 0.121794529493588 0.127418398079000 0.124916993103647 0.119732436062225 0.127442890386061 0.123985225471509 0.123589636380722 2 2|0 +|/ 16598738 16600399 16599620.6 16598301 16600853 + gene protein_coding_gene FALSE TRUE AT2G39780.1 RNS2 (RIBONUCLEASE 2); endoribonuclease S-like ribonuclease Identical to Ribonuclease 2 precursor (EC 3.1.27.1) (RNS2) [Arabidopsis Thaliana] (GB:P42814;GB:Q42136); similar to ribonuclease T2 family protein [Arabidopsis thaliana] (TAIR:AT1G14220.1); similar to S-like RNase [Antirrhinum majus x Antirrhinum hispanicum] (GB:CAD33235.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) 0.293762179641278 3.22391351374537 0.00821036724899558 1 2.97555385818105 18.9540925698243 0.293762179641278 0.0687338983772624
AT2G20570_at 10.2440568803752 10.2220333717092 10.5050624551993 10.4031305687817 10.807482550306 10.4287148229308 11.3767514842279 11.1986585953468 10.4001679818049 10.6721500519761 10.3665995718415 9.95355313652827 10.3719456382831 10.2535522709799 9.83278218499973 10.1136339892408 10.3120780154999 10.100000912784 10.5379256984143 0.0833492290131475 0.0849566720416253 0.0886593465719196 0.0856955018438317 0.0826847517254412 0.0849539514595422 0.0838917436932696 0.082361739626211 0.0965670757204317 0.082452138070834 0.0847153827779437 0.0857391744203352 0.0874204732017647 0.0873205771726012 0.08648785870269 0.085408719215284 0.086289706689856 0.0872707063611317 0.0830962499742046 2 2|0 +|/ 8863711 8864555 8864073.75 8862439 8864837 + gene protein_coding_gene FALSE TRUE AT2G20570.1 GPRI1 (GOLDEN2-LIKE 1); transcription factor Encodes a protein containing a GARP DNA-binding domain which interacts with the Pro-rich regions of GBF1 and GBF3. Transactivates transcription in yeast. similar to GLK2 (GOLDEN2-LIKE 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G44190.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE89013.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.299003589661236 -3.22153857723827 0.00824493897271198 1 2.97184416488688 20.9981194039853 -0.299003589661236 0.0746460039344073
AT2G32260_at 8.28765384726719 8.31595355006534 8.84432293746488 8.63501246212598 9.0906905534025 8.57527976508568 8.69868792482454 8.10308979813268 7.97609583599939 7.95838445160746 8.43458123863297 8.22472426955683 8.44024619137276 8.42947529750125 7.96398061982933 8.44696549590942 8.44613733706785 8.2334246000798 8.07506193831035 0.156126784992262 0.148031340329667 0.149832657044338 0.151853903806462 0.150881936988785 0.151383642393094 0.154519148599152 0.167986265488906 0.164950520211378 0.161936417383387 0.160930814122113 0.148031340329667 0.159222741125678 0.154591084931739 0.157911109540526 0.150992191001732 0.153554085471352 0.151153549494846 0.16303454543174 2 2|0 +|/ 13705823 13707195 13706611.3 13704593 13707718 + gene protein_coding_gene FALSE TRUE AT2G32260.1 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative similar to cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G15130.1); similar to CTP:phosphocholine cytidylyltransferase (GB:AAA93035.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.379620644359351 3.22139190661556 0.00824707889336016 1 2.9716150532603 16.7341476664042 0.379620644359351 0.141121506002092
AT2G32640_at 5.86784118804652 5.31162983422539 4.83041090934208 4.84796071160135 5.46183616228924 5.50268318978747 7.50805538171148 6.42376525519549 5.40547019664503 6.79738834082799 5.92312361975573 6.62553308954366 5.6593017838515 5.94178117977852 6.920254653307 6.5088577860993 6.71501411693575 5.90573667387524 6.19761911513948 0.214930922352196 0.212262130843837 0.209626968041219 0.219814384177528 0.212622846796194 0.215429354534457 0.212389530061734 0.209926139920865 0.224609109226776 0.221964670896258 0.218113405302640 0.209626968041219 0.223393298131220 0.21025627957649 0.216056097246987 0.214542765151587 0.209626968041219 0.219955967649982 0.221457825391633 2 2 - 13854301 13855543 13855037.6 13853996 13857986 - gene protein_coding_gene FALSE TRUE AT2G32640.1|AT2G32640.2 similar to Os08g0422000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061825.1); similar to hypothetical protein Npun02004577 [Nostoc punctiforme PCC 73102] (GB:ZP_00108170.1); contains domain no description (G3D.3.50.50.60); contains domain FAD/NAD(P)-binding domain (SSF51905)|similar to Glycine/D-amino acid oxidases-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL50078.1); similar to Os08g0422000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061825.1); contains domain no description (G3D.3.50.50.60); contains domain FAD/NAD(P)-binding domain (SSF51905) -0.487821179758591 -3.22101060655985 0.0082526446962295 1 2.97101942593097 11.9234942859070 -0.487821179758591 0.211029687717175
AT2G16630_at 5.7582979896921 6.09026814997131 5.45694882826527 5.75260997111507 7.37484096215472 7.39980968653452 6.1123585879277 7.3202872254043 8.26930967205022 6.68044599098786 8.84777035568024 8.31330420196373 6.85781949364894 8.40321119511576 8.66090200890679 6.09636530283717 6.33122896922605 8.27524114379757 5.70371884689792 0.249590883492629 0.237656024026345 0.257947373749414 0.247273023596461 0.239775274403189 0.258988425810224 0.237656024026345 0.246175711412738 0.251321474519067 0.239987885117595 0.243021719526229 0.250145694815031 0.238984724792704 0.245683893228784 0.23889909009859 0.243146857853072 0.271505361436321 0.247166916841283 0.244971625708458 2 2|0 +|/ 7216964 7217916 7217598.3 7216321 7218119 + gene protein_coding_gene FALSE TRUE AT2G16630.1 proline-rich family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G15160.1); similar to Os11g0657400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068397.1); similar to Os02g0101900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045593.1); similar to putative membrane protein [Emiliania huxleyi virus 86] (GB:YP_294122.1); contains domain PRICHEXTENSN (PR01217) 0.507244102176786 3.22023096889850 0.00826403689772038 1 2.96980153386237 13.7120385937376 0.507244102176786 0.222786270575783
AT3G30480_at 0.859959809631955 1.08752935679296 1.05576563771135 0.683931013612178 0.362060494157020 0.833106990328284 0.556400611429213 0.679847532809259 1.29319141526889 1.40831869327893 1.26210394185506 0.388145651364767 0.334264046556362 0.47802879454764 0.96729063058313 1.38032262203942 0.618573284204835 0.909365425226615 1.53941183562737 0.272599983580858 0.272599983580858 0.272599983580858 0.272599983580858 0.272599983580858 0.272599983580858 0.272599983580858 0.287722594298946 0.272599983580858 0.272599983580858 0.272599983580858 0.294935988913943 0.272599983580858 0.274090998564217 0.300931777236358 0.272599983580858 0.272599983580858 0.343536036693712 0.272599983580858 3 3 + 12117038 12117383 12117212.333 12116931 12117470 + gene protein_coding_gene FALSE TRUE AT3G30480.1 zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24915.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666) -0.341798571112404 -3.21980529395596 0.00827026368635283 1 2.96913656298968 1.86777640461184 -0.341798571112404 0.113105863366610
AT1G63460_at 7.50025019706218 7.98669931205972 7.55456328768023 7.50848641740599 7.5302215011646 6.91590622897874 6.1938150166025 6.20439712394896 6.50642610194771 6.73202395981598 7.51356114428637 7.51637251687685 6.66493168079946 7.09354595153663 6.67277148753688 6.67689918864099 6.93907874826898 6.69495425324067 6.6620756291954 0.263568067588074 0.24560028320023 0.248576599782052 0.253065279777926 0.242565365921524 0.257328786596616 0.246591744972735 0.250834835656811 0.280791704134445 0.254424795986299 0.251138285821327 0.24384482971559 0.249887496518517 0.256644448438672 0.246754653048854 0.247532257757776 0.251381316275766 0.243666099595540 0.243159797615814 1 1|0 +|/ 23539218 23539967 23539635.333 23538681 23540132 + gene protein_coding_gene FALSE TRUE AT1G63460.1 glutathione peroxidase, putative Identical to Probable glutathione peroxidase 8 (EC 1.11.1.9) (GPX8) [Arabidopsis Thaliana] (GB:Q8LBU2;GB:Q9SH32); similar to ATGPX6 (GLUTATHIONE PEROXIDASE 6), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G11600.1); similar to Glutathione peroxidase [Medicago truncatula] (GB:ABE92132.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.372004877067186 3.21958736831039 0.00827345335805182 1 2.96879612545811 13.9768038531386 0.372004877067186 0.135850782896964
AT4G38970_at 13.2615492501663 13.4099275023171 13.3173184663461 13.3659198051243 13.2746970786583 13.0931922973628 14.0533888672601 14.2097149257782 14.1657338032887 14.2836777784583 14.0990784931539 14.1579291075806 14.1600007675983 14.1346699266657 14.0741559849578 14.2305444220302 13.7777726914929 14.1684903977538 14.1073920700162 0.0603329671977784 0.0610428668989611 0.0633836285240956 0.0603786692732506 0.0603992771852945 0.0663101380683548 0.0662590219078577 0.0644749623642325 0.0626354182368723 0.0606998288596832 0.0606156992357711 0.0601336577636793 0.0601336577636793 0.0630217862251562 0.0612496730608611 0.0601336577636793 0.0679758423240991 0.0614353167475158 0.0611174331030162 4 0|4 /|- 18163717 18164448 18164037.4 18163490 18165756 - gene protein_coding_gene FALSE TRUE AT4G38970.1|AT4G38970.2 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G21330.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-like protein [Hevea brasiliensis] (GB:AAM46780.1); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741)|similar to fructose-bisphosphate aldolase [Arabidopsis thaliana] (TAIR:AT2G21330.2); similar to chloroplast latex aldolase-like protein [Manihot esculenta] (GB:AAV74407.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.278067108928912 -3.21810180387616 0.00829523021684883 1 2.96647535272571 27.6411792447059 -0.278067108928912 0.0494827465602425
AT3G16700_at 3.90915964539733 3.50784849236535 2.97325200621349 3.06054237406611 2.89703399604399 2.8810717686965 2.9018076889864 2.45597687520800 4.06818848798093 3.38339527892101 3.19456089024332 3.85804775123611 2.94768454366255 3.48818343168176 3.27090317352746 3.00683188472303 2.18067055697888 3.70278848258234 3.43412036900435 0.232356403941394 0.229853805024393 0.228461372365983 0.235259160314801 0.223038769017343 0.236403798319864 0.226842093089430 0.226960264992478 0.233824574196605 0.231537617817030 0.225013112985130 0.223038769017343 0.225191683857096 0.235250584942453 0.223038769017343 0.225090306843599 0.242108958722162 0.234935168787105 0.232501264901372 3 3|0 +|/ 5687895 5689628 5688691.889 5687727 5689725 + gene protein_coding_gene FALSE TRUE AT3G16700.1|AT3G16700.2 fumarylacetoacetate hydrolase family protein similar to fumarylacetoacetate hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G15940.1); similar to isomerase-like protein [Arachis hypogaea] (GB:AAZ20293.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (InterPro:IPR002529) -0.331541172603456 -3.21808184043854 0.00829552325726039 1 2.9664441647594 6.49072504818791 -0.331541172603456 0.104935952768831
AT4G28740_at 9.55292548017013 9.67222195571954 9.9723184441797 9.96382949334747 9.80096503132247 9.6077625360775 10.2109266254236 10.2434620177463 9.78312255553051 9.9810081175276 9.39911219495398 9.02186779880568 9.6537882581206 9.50284136066707 9.0444175365684 9.6567009159548 9.887340119001 9.23298174383648 9.89099915267424 0.072795837317539 0.072453810631393 0.0766835138458308 0.072453810631393 0.0724975585989442 0.0804636397227646 0.073655627890437 0.072453810631393 0.079610393538377 0.072453810631393 0.0755245330568107 0.0737832082867693 0.0742616762674731 0.0748213450395441 0.0774268620173098 0.0739090693246782 0.0750344539989233 0.0839779014337958 0.0727276456201275 4 4|0 +|/ 14201729 14202505 14202100.2 14200909 14202687 + gene protein_coding_gene FALSE TRUE AT4G28740.1 similar to LPA1 (LOW PSII ACCUMULATION1), binding [Arabidopsis thaliana] (TAIR:AT1G02910.1); similar to OSJNBa0043L24.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE04717.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55849.1); similar to Os04g0507100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053262.1) -0.271913588894357 -3.21658141388467 0.00831757797195115 1 2.96410005928664 19.5330137061146 -0.271913588894357 0.0397232900894287
AT2G44610_at 9.06243935193535 9.15889343490271 9.09972593656357 9.05829566640806 9.2501282669294 8.78820924249797 8.79778174589757 8.81895918728028 7.92054018282475 8.09671143316259 9.02283089529468 8.89548253714094 8.68188104151548 8.6190867379352 8.95937381232496 8.388485288568 8.21808856729053 7.59491006290127 8.05937698023008 0.136818710704398 0.136818710704398 0.137013713238737 0.136818710704398 0.136818710704398 0.142799359258569 0.138865047528829 0.139789159646039 0.160148627455705 0.144914259640792 0.137656255252584 0.136818710704398 0.144544587628684 0.145361400112774 0.138182676046502 0.139588508853251 0.157227309274043 0.163379121953615 0.149345996724280 2 2|0 -|/ 18418869 18420897 18419878.75 18418507 18421157 - gene protein_coding_gene FALSE TRUE AT2G44610.1 RAB6; GTP binding Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. similar to AtRABH1e (Arabidopsis Rab GTPase homolog H1e), GTP binding [Arabidopsis thaliana] (TAIR:AT5G10260.1); similar to putative (GB:AAA74117.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.305772925280676 3.21574920253196 0.00832983632609296 1 2.96279985263865 17.2908342206905 0.305772925280676 0.082057391556162
AT4G12040_at 8.76516619056596 8.87231503379944 9.00748144424523 9.07016339159129 9.37963655213266 9.41001407400457 8.7054151507237 8.56599553627631 8.5259296410754 8.4917457871688 8.59237157770572 8.45606151062862 8.46232317053183 8.5658488317605 8.1634732407469 8.5913537725342 8.48228659890307 8.44571154827842 8.2512887845714 0.120582776553383 0.120242362183968 0.125421711447432 0.124898080928763 0.120360922485008 0.122064263900348 0.120408501110682 0.120464702847807 0.12333459448049 0.123114936377625 0.127474856910720 0.12125454164503 0.118555363945480 0.122427882787603 0.132690119583273 0.120965751205406 0.123720318210331 0.132738388696620 0.115817154513927 4 4 + 7215350 7215728 7215527.909 7214697 7215983 + gene protein_coding_gene FALSE TRUE AT4G12040.1|AT4G12040.2 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (AtSAP7) (SAP7) [Arabidopsis Thaliana] (GB:Q9SZ69); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT4G22820.2); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.268270799049854 3.21567383700904 0.00833094735666256 1 2.96268210348266 17.4184818478297 0.268270799049854 0.0327299964496731
AT1G55200_at 1.94036847034298 2.08869170417047 1.71831247227375 2.02516458277281 1.53739764381733 1.90864787738147 2.05948280580503 2.14160985259108 2.69156111751674 2.48467458701568 1.99090776935025 2.25122192392472 2.15614425550599 2.14359775316157 2.00224184067344 2.33554755323065 1.97472435856249 2.19330474008373 2.31026891439888 0.186068430279321 0.189845292386778 0.188089165253917 0.192213262096621 0.187755334977192 0.19727646113295 0.193035923136075 0.188641112693395 0.193788468894934 0.189402905527606 0.193373741539833 0.187456053142046 0.187744531624580 0.193148031523639 0.187393062295084 0.19233212911738 0.191479658508117 0.189803868321195 0.191194737495001 1 1|0 -|/ 20592993 20593916 20593561.4 20592796 20595730 - gene protein_coding_gene FALSE TRUE AT1G55200.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G13690.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56790.1); similar to Os01g0602800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043500.1); similar to dual-specific kinase DSK1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52649.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.312348914749105 -3.21539660737626 0.00833503554398523 1 2.96224896457652 4.24069083312205 -0.312348914749105 0.0883646306413533
AT1G69550_at 3.54096869906361 4.46375356548399 4.30046034249436 4.58560828617015 4.98615295804439 4.33179213153051 4.68463836749131 4.85946676106914 3.62429067801125 3.56392972819801 4.41688643350782 4.76855832436301 4.05023915011335 4.78199882604553 4.23405516869833 4.83796525892876 4.37284502251118 3.96072521963758 3.73589686851341 0.238857413492403 0.23755803589272 0.23755803589272 0.239866300123613 0.2381312645114 0.247201942624694 0.242783883168788 0.243425846532424 0.266343815565971 0.246416288296736 0.244927372110159 0.243652539058981 0.241608850628017 0.247129684188318 0.244182636098136 0.239181757160776 0.24964089177369 0.25922104553948 0.240719644329943 1 1 - 26154769 26155405 26155181.091 26154665 26157218 - gene protein_coding_gene FALSE TRUE AT1G69550.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G65850.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G04220.1); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593) 0.47516666592549 3.21188150276983 0.0083870486333471 1 2.95675669130172 8.50374593911006 0.47516666592549 0.20414541549565
AT4G10280_at 4.176276239049 4.89586301151879 4.81907222803823 4.55310549221874 5.55884021225002 4.69255060142198 4.92756906143527 5.09320801853879 3.55182394984101 3.89178959351013 4.47625306059435 4.44633609831401 4.9404754228855 4.43778377407738 5.07788630531285 5.12796018310714 4.26103003530104 4.80596360549812 4.21186982113418 0.240060710486469 0.229670702616960 0.251632167732744 0.239565767058785 0.235352168116942 0.234274501398866 0.247120262042568 0.230242218162286 0.256419603305977 0.23090505109313 0.233839043686540 0.237098418220518 0.226707625399753 0.231257882389756 0.240384653476778 0.226707625399753 0.250238132286125 0.238748680388305 0.234604118868250 4 4|0 -|/ 6375796 6375956 6375884.222 6375123 6376107 - gene protein_coding_gene FALSE TRUE AT4G10280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10290.1); similar to Cupin, RmlC-type [Medicago truncatula] (GB:ABE78697.1); similar to Os04g0445200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052900.1); similar to OSIGBa0140O07.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67236.1); contains InterPro domain Protein of unknown function DUF861, cupin_3; (InterPro:IPR008579); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313) 0.472106494993986 3.2115811499355 0.00839150824429325 1 2.95628736813444 9.13049669912456 0.472106494993986 0.202291751771597
AT1G59830_at 7.6079652975775 7.4034104082221 7.1531282749275 7.22953530248521 7.78153783711948 7.30296922305431 7.18060478321204 7.46676918448864 7.30807828691456 7.15780942668753 8.29281276091057 8.362402189109 8.2094892623279 8.37095331734476 7.52806782615011 8.3585805014691 8.10451428726318 6.91369716758785 7.4677324647392 0.163079290591996 0.161060786048665 0.164353634728495 0.165908752856817 0.162773144737249 0.175311035428186 0.162808494637673 0.167604257001994 0.191416292742851 0.174891793920375 0.165208473081303 0.161060786048665 0.166012023163404 0.16140617046338 0.165444977762773 0.163248791166219 0.171122334107226 0.174103464659370 0.162222148940921 1 0|1 /|- 22024400 22024794 22024587.8 22024184 22026149 - gene protein_coding_gene FALSE TRUE AT1G59830.1|AT1G59830.2 PP2A-1 (protein phosphatase 2A-2); protein serine/threonine phosphatase Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. Identical to Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) (PP2A2) [Arabidopsis Thaliana] (GB:Q07099); similar to PP2A-2 (protein phosphatase 2a-2), protein phosphatase type 2A [Arabidopsis thaliana] (TAIR:AT1G10430.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)|Identical to Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) (PP2A2) [Arabidopsis Thaliana] (GB:Q07099); similar to PP2A-2 (protein phosphatase 2a-2), protein phosphatase type 2A [Arabidopsis thaliana] (TAIR:AT1G10430.1); similar to type 2A protein phosphatase-1 [Vicia faba] (GB:BAA92697.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.329231589464049 3.21083874171835 0.00840254180458734 1 2.95512728210012 15.0551257339529 0.329231589464049 0.103630519489805
AT4G00750_at 7.5631145475508 7.73868333090088 7.92166622926055 7.90352621013567 8.3300148962201 7.8797591385926 9.01170383992988 8.78864154977215 8.34976698637367 8.37183016348909 7.81719957618636 7.51540977481078 8.04329176309387 8.15141245267103 7.68096855804603 8.42801891411523 8.13889471189047 7.74537106282082 8.19412451196736 0.149493228097928 0.150425064858496 0.149194564013778 0.148543813853231 0.158712039415164 0.177762224142183 0.158300520280099 0.147021108029735 0.162903158301214 0.147961239787666 0.157261787779034 0.152466236454042 0.148318938916974 0.156669390475549 0.148784374728277 0.151462084373779 0.161614654358519 0.158554550280498 0.146087788018997 4 4 + 316923 317477 317100.182 314353 317675 + gene protein_coding_gene FALSE TRUE AT4G00750.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE88265.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.315981950362620 -3.21017635542599 0.00841239854668878 1 2.95409221523677 16.2647944206192 -0.315981950362620 0.09216529593195
AT1G17665_at 1.66690714522392 2.33375240955891 1.41659243367371 1.76107246236540 2.48397161975362 2.36094313593075 0.686984801896999 0.948144655954033 1.15593820919095 0.599832982542223 1.10718197279686 1.40060297251778 0.82676846045825 0.985089907289713 1.14090524308159 0.80854556609824 1.00263572091687 1.18603424024908 0.95308429232401 0.233278187222682 0.234397001994821 0.232386251680235 0.232223660590026 0.237022588386439 0.239138574500997 0.232607095318496 0.233721509797128 0.235482906448229 0.231766654911954 0.231844189389880 0.2338434857811 0.229285698364551 0.237017349342303 0.232286052389326 0.229285698364551 0.229285698364551 0.238922238335647 0.230987235677162 1 1|0 -|/ 6072611 6074014 6073153.667 6072591 6074477 - gene protein_coding_gene FALSE TRUE AT1G17665.1 similar to Os01g0197400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042299.1) 0.375483171089696 3.20965883071948 0.00842010783667827 1 2.95328349886408 2.68738225226722 0.375483171089696 0.139165388906315
AT1G14890_at 6.71061319764804 7.10661537102239 4.54522889872876 4.56267550537805 6.63449539299893 5.93978104908864 5.36696394568522 5.46675470240776 7.5218270542597 6.24748233154723 8.63372753644514 9.22730282237142 6.78985766057836 8.78494215168538 9.3970258261317 8.57694701794273 7.48191004349969 8.62073765604201 7.06567854463309 0.242467086333815 0.232525529639712 0.241427075313614 0.236546950699223 0.238166359297321 0.238427181248365 0.232525529639712 0.244007199989744 0.244667842869748 0.238099407080057 0.235229125860074 0.233464196740655 0.239839326739556 0.239217787902989 0.240493200203733 0.232525529639712 0.247535145978073 0.234948821364558 0.243836325489158 1 1 + 5137110 5137665 5137402.909 5137048 5137926 + gene protein_coding_gene FALSE TRUE AT1G14890.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G01610.1); similar to 21 kDa protein precursor (1.2 protein) (GB:P17407); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.375934384940728 3.20962111910498 0.00842066988732928 1 2.95322456782891 13.4836671659449 0.375934384940728 0.139489822674896
AT2G38790_at 6.2650161020391 6.93877524963621 6.01780224396441 6.12688905286926 6.7146581766925 6.60020011299133 5.69984139810201 5.80073515390314 5.31693122011738 5.1507490546723 4.15030295735384 4.24246787644192 4.84240447671093 4.81595457161233 4.24895738140876 3.94942422615866 4.32781883963591 4.09739074948879 5.20696871613143 0.233746761860869 0.234178498039874 0.237669532162507 0.226475684832623 0.246206044710806 0.234722887913490 0.228654161367886 0.233673987645999 0.229916307640445 0.225635375098355 0.225635375098355 0.230135182226508 0.225635375098355 0.228133576893449 0.227093545379043 0.225769178746813 0.239368411848431 0.229084744159499 0.232132832061801 2 2 - 16221633 16222185 16221855.273 16221267 16222342 - gene protein_coding_gene FALSE TRUE AT2G38790.1 unknown protein -0.350873720706525 -3.20958324878426 0.008421234341724 1 2.95316538871696 11.0501012521873 -0.350873720706525 0.121030863727628
AT1G79460_at 7.0622806870984 6.86021394019674 6.67568000302605 6.02842454115745 7.73164772812553 7.10098044426077 7.85475240715225 7.33318738907573 5.70801444518451 7.13876900305011 8.25105948268991 8.24638819935715 7.43407832713399 7.99926290628033 7.99580397110673 6.60201551612467 6.74304656313309 8.0764797447732 6.32458393905814 0.21670790440383 0.221785002004293 0.216062023895306 0.224217189137722 0.216062023895306 0.224846197746650 0.219289858746171 0.221594176887427 0.225351790141231 0.216062023895306 0.216062023895306 0.216062023895306 0.216062023895306 0.216062023895306 0.216247862049330 0.216070591564157 0.217742069467938 0.218520282812657 0.222865706280699 1 1 + 29898489 29899285 29898760.455 29895285 29899480 + gene protein_coding_gene FALSE TRUE AT1G79460.1 GA2 (GA REQUIRING 2); ent-kaurene synthase Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway. Identical to Ent-kaurene synthase B, chloroplast precursor (EC 4.2.3.19) (KSB) (AtKS) (GA2) [Arabidopsis Thaliana] (GB:Q9SAK2;GB:O64952;GB:Q67ZQ6); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G61120.1); similar to kaurene synthase [Stevia rebaudiana] (GB:AAD34294.1); similar to ent-kaurene synthase [Cucumis sativus] (GB:BAB19275.1); similar to ent-kaurene synthase No1 [Lactuca sativa] (GB:BAB12441.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) 0.442317808161149 3.20879575338914 0.00843298062802367 1 2.95193477113009 14.1103822098062 0.442317808161149 0.183922338276875
AT3G56820_at 5.98130458969748 6.2603006426009 6.51019667121395 6.28222094030903 6.78411758084347 6.52109144300438 5.93818074323618 6.17383145119127 5.5010074024542 5.37251764057427 5.66350667688442 5.25374380556651 5.91685003656095 5.80253534528598 5.18402829697723 5.464302435468 5.99496576863862 5.89146683061421 5.51052053991024 0.222566352216000 0.225862147896137 0.224878021834069 0.232443757059427 0.227022077812816 0.236503624409618 0.227107688886788 0.221820027572755 0.252865894219575 0.224276761218779 0.230237739398303 0.219477523985506 0.226057935850538 0.226927445614703 0.234265666655464 0.220531986037698 0.231493858561831 0.226321823673862 0.221308484169891 3 3 - 21051061 21052536 21051834.455 21050782 21052739 - gene protein_coding_gene FALSE TRUE AT3G56820.1 similar to Cupin, RmlC-type [Medicago truncatula] (GB:ABD28667.1); similar to Os01g0810200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044582.1); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.310539337007254 3.20840024160955 0.00843888636916497 1 2.95131669413350 11.8602922213349 0.310539337007254 0.0873070189281397
AT1G01800_at 10.0067710290205 10.1355518654757 9.68906673299284 9.7567581267 9.77513473174245 9.64736657324029 9.98004449990825 10.0692094522096 9.55347769637471 9.72270836439559 9.5678281892881 9.49929071880736 9.5447840669545 9.34374906466621 9.3847454528352 9.53541137118049 9.18304471931977 9.3195556175404 9.61628980168042 0.12182559774469 0.122443524296904 0.125412238619761 0.119736822919213 0.115865087853242 0.122967887366646 0.118285302823082 0.119968241606684 0.119756575017508 0.117734362756196 0.12054959382303 0.120220124781978 0.118891856929118 0.127122318095147 0.123299295802461 0.118266033552192 0.120557406102579 0.124714744180495 0.116952328526041 1 0|1 /|+ 294214 294838 294570.1 293342 295040 + gene protein_coding_gene FALSE TRUE AT1G01800.1|AT1G01800.2 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28441.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.26966840394709 -3.20798200363752 0.0084451360314428 1 2.95066309396739 19.40905109519 -0.26966840394709 0.0368901725903914
AT1G80620_at 4.66778861536548 4.94579594354702 4.34898640749394 4.40616532542082 4.46692138039398 4.42601974645657 4.84135300182544 4.74127837849859 4.08266392556147 4.14635475078911 3.80896892849854 4.08456368839214 4.02677092076403 4.08034367714423 4.49716882551582 3.91114762701328 3.93275856410953 3.88715113893352 4.37165955444559 0.190719532081974 0.196722797063003 0.186653100977064 0.189258451843273 0.203270164886146 0.206345101708361 0.194130571466872 0.186342911167304 0.203440182556822 0.190798466922245 0.191127551275902 0.190002598379466 0.186803653543954 0.196548158025528 0.187455549687993 0.185716217789656 0.19948588070473 0.185828804568072 0.200705984439563 1 1|0 +|/ 30310992 30312022 30311366.556 30310256 30312309 + gene protein_coding_gene FALSE TRUE AT1G80620.1 ribosomal protein S15 family protein similar to ribosomal protein S15 family protein [Arabidopsis thaliana] (TAIR:AT1G15810.1); similar to Os02g0803200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048424.1); similar to ribosomal protein S15-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44816.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15, bacterial chloroplast and mitochondrial type; (InterPro:IPR005290); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) -0.279323837751738 -3.20794226021174 0.0084457301558693 1 2.95060098459999 8.71995622398945 -0.279323837751738 0.052560031063521
AT1G74410_at 7.9746713898177 8.15160319784526 8.50813224893023 8.2982416043341 8.40864531341652 8.28757423415536 6.8180987291574 7.37590438630573 6.08544893020049 6.13421037653619 5.9177327132703 4.85921132301758 5.78860902505389 5.93632528578213 5.31753357256571 6.07939401404782 7.17780201193722 6.01766846908452 5.81055602272128 0.201605583245285 0.204048547798765 0.202803960886189 0.203790468603666 0.205038352028362 0.213746104008101 0.205055586166103 0.206024725649142 0.205363059438678 0.207029435344524 0.202707116623677 0.203127940699701 0.207723129487664 0.201605583245285 0.213900779006531 0.201605583245285 0.201605583245285 0.205415872015375 0.201605583245285 1 1|0 +|/ 27969475 27971306 27970378.2 27969212 27971587 + gene protein_coding_gene FALSE TRUE AT1G74410.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1Q (ATL1Q) [Arabidopsis Thaliana] (GB:Q8LBA0;GB:Q94A26;GB:Q9CA72); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G66070.1); similar to Os06g0231600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057223.1); similar to putative NEP1-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16113.1); similar to Os02g0743700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048097.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.336145849893222 3.20756833743699 0.00845132200879717 1 2.95001662991152 13.9262870521607 0.336145849893222 0.109608554267560
AT4G27620_at 4.71671216620454 4.7217303903311 4.7827774143562 4.43142465001936 4.58879932055696 5.26040660198775 4.95896368245675 4.20675117348346 3.60287694889347 3.4780831325383 4.45873916115337 4.34619932002394 4.19338088602793 3.92483396678898 4.42995143883427 4.18516211861427 4.94271498772761 3.80417950544829 3.45937266859806 0.179162287120337 0.184973619621717 0.173926327602461 0.174617926819284 0.183238237365019 0.187084653444671 0.181188153847106 0.181460930225552 0.185051356818061 0.176395032756968 0.178273652138563 0.173926327602461 0.176581478603282 0.179803215326408 0.173926327602461 0.176214727286159 0.174399047348478 0.180570241249174 0.186899923371531 4 4 - 13789065 13789620 13789451.455 13788827 13790989 - gene protein_coding_gene FALSE TRUE AT4G27620.1|AT4G27620.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27610.3); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD29314.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.443506783339249 3.20739074837573 0.008453979094842 1 2.94973909695091 8.60799038646815 0.443506783339249 0.184800500449793
AT1G17640_at 3.26171826015728 3.38115520139248 4.10547775511384 3.99468772812368 3.47186496248368 3.58452856779778 3.06008086864045 3.18294357803400 3.19035721446292 3.57829358594735 3.21540924553932 3.29188276278515 3.38801474081102 3.59111665672761 3.15362796608175 3.65372325822063 3.21011088474094 3.96858625431144 3.60786040770588 0.208550122764608 0.211638017673094 0.205638465940376 0.212569522255280 0.211856458069328 0.208070410992361 0.220383011905864 0.209504701432889 0.206892490732972 0.206728546487798 0.203430251500459 0.209508495290776 0.209774659220475 0.216888943944947 0.216905944329827 0.203085534643330 0.214476573480674 0.222516719367638 0.209637842306853 1 1|0 -|/ 6067393 6067993 6067680.3 6067387 6069091 - gene protein_coding_gene FALSE TRUE AT1G17640.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G40490.1); similar to Os02g0221500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046322.1); similar to putative heterogeneous nuclearribonucleoprotein A2 [Oryza sativa (japonica cultivar-group)] (GB:BAD17623.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.271443589051938 3.20697663850582 0.0084601783040958 1 2.94909192758923 6.95175513548004 0.271443589051938 0.0403361972610406
AT3G22435_at 2.94639987720497 2.96451794798455 2.83252126367114 3.04687722579716 2.90329685200775 3.16900029213501 2.49905422767961 2.82312163638656 3.23654176008759 2.46109632419096 3.40406297616697 3.33551896836805 3.15724340636360 3.57416688533036 3.19944554317867 3.55898847725923 3.37751443035445 3.09896733517513 3.02995069204170 0.192238529314197 0.187878372059643 0.191902826635793 0.188441973104210 0.193089586300165 0.191503304194140 0.194384485849107 0.199047581662492 0.187086426740964 0.184017160811866 0.187904621892614 0.185520628458241 0.196527192626970 0.1902645943401 0.184017160811866 0.193260482935818 0.190470335827491 0.197837140307562 0.193185006204847 3 3 + 7956318 7957518 7957060 7956255 7957891 + gene protein_coding_gene FALSE TRUE AT3G22435.1 XS domain-containing protein similar to XH/XS domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G59390.1); similar to Os03g0159200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049028.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06846.1); contains InterPro domain Region of unknown function XS; (InterPro:IPR005380) 0.304346365044994 3.20649636087485 0.00846737383262296 1 2.94834134103455 6.02181604613233 0.304346365044994 0.081518619811868
AT1G35710_at 11.0850258517073 10.7708339386184 12.1954791359743 11.6890767751156 11.0563068455274 10.2007440005982 8.85579167511812 7.93363971193096 10.4981887709005 9.02012358180644 8.74407058310706 9.05347273808344 8.6624485989517 9.21597908613287 8.10791925718792 9.80241264666957 9.39188293441805 9.92148238543465 9.47860232877212 0.116300964731356 0.116300964731356 0.117903363799343 0.123137261744954 0.118587354713889 0.116507350308980 0.120041031357479 0.123536400877261 0.125456015595953 0.120528849362591 0.124924005512174 0.116885149437962 0.132295064919851 0.127428948330835 0.132624005797331 0.116300964731356 0.121654454487273 0.120237264292321 0.116740690356528 1 1|0 +|/ 13224919 13225574 13225225.2 13222152 13225893 + gene protein_coding_gene FALSE TRUE AT1G35710.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G08850.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G17230.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63930.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE80260.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82661.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.535449598274337 3.20585960442376 0.00847692332654933 1 2.94734618926078 19.8624106197777 0.535449598274337 0.240882639360123
AT3G12250_at 4.69655750054103 4.63957378959947 5.10929097834771 4.69876774692572 5.48948414194397 5.15823353938892 4.3129647346918 3.76321862254254 3.57959677053016 3.07724497101238 3.3423314099141 3.09252170360043 3.17364867218905 3.35221129292615 3.2794604713348 2.93073877862644 4.47040012180442 3.264934203903 3.52310566595958 0.233566017344159 0.229559651931558 0.235145512555808 0.241410521733081 0.232772446483586 0.241946023113456 0.237691014329377 0.239039658648816 0.245101542114616 0.230193608253859 0.231344144511029 0.229869459141541 0.229559651931558 0.233837085887707 0.229559651931558 0.231193399127981 0.242453964705198 0.235394563592952 0.234984508339125 3 3|0 +|/ 3907793 3908538 3908223.8 3905521 3908990 + gene protein_coding_gene FALSE TRUE AT3G12250.1|AT3G12250.2|AT3G12250.3|AT3G12250.4|AT3G12250.5 TGA6 (TGA1a-related gene 6); DNA binding / transcription factor|TGA6 (TGA1a-related gene 6) basic leucine zipper transcription factor involved in the activation of SA-responsive genes. Identical to Transcription factor TGA6 (AtbZIP45) (TGA6) [Arabidopsis Thaliana] (GB:Q39140;GB:Q9C7D1;GB:Q9LHI1); similar to AHBP-1B (bZIP transcription factor HBP-1b homolog) [Arabidopsis thaliana] (TAIR:AT5G06950.4); similar to leucine zipper (GB:AAC37470.1); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|Identical to Transcription factor TGA6 (AtbZIP45) (TGA6) [Arabidopsis Thaliana] (GB:Q39140;GB:Q9C7D1;GB:Q9LHI1); similar to AHBP-1B (bZIP transcription factor HBP-1b homolog) [Arabidopsis thaliana] (TAIR:AT5G06950.4); similar to leucine zipper (GB:AAC37470.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to AHBP-1B (bZIP transcription factor HBP-1b homolog) [Arabidopsis thaliana] (TAIR:AT5G06950.4); similar to leucine zipper (GB:AAC37470.1); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.365415234547230 3.20584248513418 0.00847718021721252 1 2.94731943418914 8.11180969889165 0.365415234547230 0.132216958776278
AT2G20110_at 1.81481516663987 1.49976862690791 1.48556728820600 1.9011923138726 1.35865245869148 1.45859296461736 0.839206336891762 0.93576204675139 1.10467025500513 1.44766081626460 1.70273199840642 1.40604591402722 1.89180975274287 1.61134503209419 1.59033119936489 1.3818387288294 1.63629905936039 2.11830779261383 1.38417208152395 0.208027120299825 0.208925614624490 0.211657562679968 0.211544442629539 0.200359740426642 0.210359703718526 0.203759212351273 0.206002742498112 0.208864995758356 0.211950428947627 0.205572648818118 0.200359740426642 0.210520292268534 0.208633240144986 0.205795370840817 0.209325783379750 0.206858777881849 0.215961733461477 0.207819108241740 2 2 + 8693269 8693904 8693554.273 8691577 8694299 + gene protein_coding_gene FALSE TRUE AT2G20110.1|AT2G20110.2 tesmin/TSO1-like CXC domain-containing protein similar to tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G29000.1); similar to Tesmin/TSO1-like, CXC [Medicago truncatula] (GB:ABE82782.1); contains InterPro domain Tesmin/TSO1-like, CXC; (InterPro:IPR005172) 0.316892089565567 3.20548636644824 0.00848252590081685 1 2.9467628669269 2.90144785146119 0.316892089565567 0.093402973426829
AT4G28220_at 5.99764089139047 5.17225393007985 4.1888553127168 3.92850275514178 4.31057834871962 4.46249666418901 4.65912041635726 4.65159521575112 4.29019553815928 4.6844389515808 4.78292221809826 5.36136624902674 4.42802740293022 4.7887797618813 5.35976776933574 4.68476863453401 4.4117585861622 4.38749411613788 5.0190985799481 0.197691608855049 0.203565228304907 0.194385888331264 0.193413325729482 0.190612316377703 0.195277519608967 0.190612316377703 0.195795727711422 0.20082945634235 0.191543293366563 0.191139871183164 0.192191237217529 0.190612316377703 0.193685285179206 0.201596380125935 0.190612316377703 0.195701489820754 0.201096456149497 0.196884848445256 4 4 + 13994852 13995633 13995244.727 13993003 13995837 + gene protein_coding_gene FALSE TRUE AT4G28220.1 NDB1 (NAD(P)H DEHYDROGENASE B1); NADH dehydrogenase/ disulfide oxidoreductase similar to NDB4 (NAD(P)H DEHYDROGENASE B4), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G20800.1); similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G21490.1); similar to NDB2 (NAD(P)H DEHYDROGENASE B2), disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05020.1); similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand [Medicago truncatula] (GB:ABD32606.1); similar to external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum] (GB:CAB52797.1); similar to Os06g0684000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058394.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.393255720417818 -3.20375628755928 0.00850854486819296 1 2.94405889096973 9.39147458287291 -0.393255720417818 0.15206994752965
AT4G15620_at 2.84466666989086 2.89351524311515 2.83146708965952 3.10321989290279 3.24849346983575 3.14985489572519 6.37380615178408 5.8611224760194 2.54485149057621 5.09060754008085 3.34179084297819 5.21480229914487 4.66211536968605 4.30597872232019 4.40325917892718 4.13761606128051 5.24262536909987 4.37431674374344 3.47615124807801 0.225994239415515 0.228087164050158 0.225854945278535 0.22307865697698 0.228384070828831 0.224157347737075 0.230776160814737 0.242972778012492 0.237470063332624 0.228172815282707 0.229195934515794 0.228495351830937 0.230171817485900 0.2220568489681 0.230150655418883 0.221680179296956 0.228105973504083 0.228744398340300 0.224033822574092 4 4 + 8914025 8915503 8914665.727 8913840 8915661 + gene protein_coding_gene FALSE TRUE AT4G15620.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G15630.1); similar to Os01g0363300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043031.1); similar to hypothetical protein MA4_106O17.50 [Musa acuminata] (GB:ABF69990.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.326787908842857 -3.2034665022032 0.00851291093093602 1 2.94360596534345 7.8703598192712 -0.326787908842857 0.102206308438037
AT2G41870_at 8.82739025559974 8.90219089646032 9.49129514523683 9.28581277469189 9.38205420596288 9.48300071938593 10.2142619445703 10.1988893863055 8.8166539783693 9.3243010787271 9.72965861175343 9.82853060329944 9.822346124513 9.77393004277694 9.5101538696971 9.70768545025392 9.87475555864173 9.53792641194035 9.02149358105495 0.107285641348060 0.112014994846331 0.106770097458046 0.110738586273719 0.107873766685325 0.113005993060828 0.110438480106247 0.110506832302087 0.119952045356501 0.111389328475002 0.108424577812607 0.106770097458046 0.108146081168765 0.112110236341777 0.106770097458046 0.106770220810077 0.110021731201892 0.119504789875441 0.119508589482941 2 2 - 17478232 17479323 17479026.909 17477944 17480014 - gene protein_coding_gene FALSE TRUE AT2G41870.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT3G57540.1); similar to remorin-related [Musa acuminata] (GB:ABF70164.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.271915689322234 3.20292991963151 0.00852100138942244 1 2.94276729257226 18.8617483561066 0.271915689322234 0.0417648903048191
AT3G53220_at 1.46049107282900 1.49736123564354 0.743409351593573 1.15754072881917 1.04644145917772 1.10851675823064 0.97835106959079 1.13350330402062 0.73487864982972 1.53504423231360 0.69867898538898 0.822985917110215 1.01812494097799 1.07451869157082 0.863049867197125 0.835425299189261 0.806159459111008 0.802720081093118 1.36567963311054 0.17634883042735 0.185835289359489 0.191392211338994 0.182011444562552 0.179574465132735 0.180112409496346 0.176414902952638 0.17634883042735 0.178558714179187 0.184695352769534 0.178681935879786 0.179106602620607 0.180617006412697 0.177571367774924 0.183321326880815 0.178249297487587 0.180155950213679 0.182215737481399 0.176842236700094 3 3|0 +|/ 19733085 19733549 19733365.444 19732972 19733680 + gene protein_coding_gene FALSE TRUE AT3G53220.1 thioredoxin family protein similar to ATTRX2 (Arabidopsis thioredoxin h2, thioredoxin H-type 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G39950.1); similar to Os04g0560200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053544.1); similar to OSJNBa0084K11.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01844.2); similar to Thioredoxin (ISS) [Ostreococcus tauri] (GB:CAL54245.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.300054597972758 -3.20285133422776 0.0085221869367831 1 2.94264446327254 2.17923957763285 -0.300054597972758 0.0775450524084446
AT1G21070_at 2.26210481214981 2.28047058225222 1.68818846897240 1.82860204781345 1.88843103139654 2.25625439295868 2.68383826944352 2.7384529206175 2.72818532448384 2.50852544137642 2.67067454019431 3.28852263758176 2.30935506229023 2.38680053197842 2.81266790130769 2.12204998895916 2.17656287453037 3.11548619934024 2.61804194522638 0.2100023855605 0.211157923668611 0.220518396517016 0.226972834820812 0.218716902158403 0.219447013737718 0.211384933899734 0.217621408387109 0.222879999143132 0.216954357920133 0.215237798104342 0.216711259898507 0.2100023855605 0.214967512194339 0.217249970791620 0.210871601448952 0.215949738129591 0.214871031993848 0.2215712926609 1 0|1 /|- 7376272 7376687 7376482.111 7375858 7378136 - gene protein_coding_gene FALSE TRUE AT1G21070.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G76670.1); similar to Os07g0581000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060103.1); similar to transporter, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95848.2); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.291916798751632 -3.20243454390399 0.00852847748209326 1 2.94199301337889 4.81755075105967 -0.291916798751632 0.0688596793831397
AT1G37080_at 0.9669563509834 1.20006543216156 1.20330323573590 1.32421856897987 0.922976694228322 1.43170942769445 0.71816751992791 0.780630708357467 0.843082877331982 1.03835163326577 1.03470816440785 1.04809502435293 1.02506798431485 1.04653993391913 1.40658082706593 1.10263512228883 1.68012007760419 1.37738185953733 0.734115300480186 0.196442402429943 0.194862784054148 0.194901093173352 0.195202094856950 0.195797407392316 0.194916166887080 0.198865627540440 0.194862784054148 0.202435744111308 0.194862784054148 0.197790920978388 0.194862784054148 0.204726579488478 0.198140556421965 0.195957991703390 0.198203145088344 0.203914275680686 0.197872319982887 0.200185809679251 1 1 - 14113975 14114597 14114284.909 14113899 14114696 - gene protein_coding_gene FALSE TRUE AT1G37080.1 similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.323694082981226 3.20230281033816 0.00853046669614493 1 2.94178710999137 2.11199902286479 0.323694082981226 0.0996637127291518
AT2G24830_at 5.33219754559871 5.76212420073571 5.36951666498125 5.69251621866027 5.63876153420074 5.57585302578097 5.03959185734311 5.42368034701197 6.02568372552334 5.94147718974484 5.34219435648204 5.36490178192867 5.24893587960298 5.22961164080339 5.06381037859626 5.45943557013246 5.50735273173551 5.14009081745741 6.50851514092238 0.196716709213731 0.189212156014757 0.190413841141486 0.182598874846631 0.184574739397941 0.193303295509996 0.184196400995191 0.188969190482130 0.203334384903566 0.182914077994716 0.182598874846631 0.182606960619855 0.188902146346183 0.188636202969543 0.187341502120144 0.182745229100268 0.189964832846303 0.186112557722740 0.184797179036132 2 2 - 10584107 10584621 10584378.909 10583935 10586309 - gene protein_coding_gene FALSE TRUE AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein similar to Os02g0793000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048365.1); similar to zinc finger protein [Aedes aegypti] (GB:EAT44138.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.342126833785540 -3.20189219532916 0.00853667012631266 1 2.94114530147918 11.2058303392837 -0.342126833785540 0.114875856013554
AT1G59790_at 2.08161595754535 2.1680685334276 2.20549187458339 2.31572260402845 1.52824474738786 2.02000039136400 1.92350110264872 2.33593750245429 2.46611952757082 2.77073918634872 2.04864893668417 2.13334276154833 1.68879276868705 1.93430897814048 2.12123054384846 2.22899663655779 1.97029741720505 2.45445830521874 2.69458776811603 0.215769263770698 0.225933115651418 0.217307844445368 0.225311194010433 0.215695766274633 0.215262297343247 0.215923711213183 0.219198168812367 0.219529951402460 0.217365610606794 0.218535628319053 0.218716429832097 0.222644007292131 0.215264427924204 0.230909861993054 0.220997988271649 0.230483956722954 0.232611169527916 0.218004736251939 1 1 + 22006192 22007016 22006701.364 22005169 22007050 + gene protein_coding_gene FALSE TRUE AT1G59790.1 cullin-related similar to ATCUL1 (CULLIN 1) [Arabidopsis thaliana] (TAIR:AT4G02570.3); similar to cullin 1-like protein C [Petunia inflata] (GB:ABB77428.1); contains InterPro domain Cullin; (InterPro:IPR001373) -0.340610910101830 -3.2017752637392 0.00853843752747253 1 2.94096253101471 4.43048535792902 -0.340610910101830 0.113684172537695
AT3G44700_at 0.494481487587006 0.613159112559965 0.320844963194009 0.302889650189137 0.556320752748375 0.141267970215267 0.512697964133329 0.547184653487473 0.446065293002974 0.581508444210530 0.140990578561349 0.111594578374301 0.0837284791003664 0.240365646067365 0.070526739041766 0.239292940827417 0.483772515848905 0.331000692890460 0.76071472481334 0.168102498924469 0.158924379522668 0.159963608958209 0.161597212840946 0.159993433850047 0.167536143005136 0.174111252113865 0.168727795927552 0.161983354037727 0.166931045866927 0.180715880224436 0.160446097488766 0.167837652109995 0.164536361711658 0.16444707391173 0.162246912768590 0.165556675844368 0.163304792635298 0.163900302947231 3 3 - 16247339 16248151 16247534.727 16247330 16248723 - gene protein_coding_gene FALSE TRUE AT3G44700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44710.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45681.1); similar to Os06g0524700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057760.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.297493551512601 -3.20157301422645 0.008541495372914 1 2.94064640243157 0.84048340693829 -0.297493551512601 0.0750077519188678
AT3G42990_at 1.32127927947094 0.760438325539253 0.47241570732283 0.598933437224994 0.800998895067757 1.04931022429539 0.568509830739361 0.644999430009306 1.36115268926448 1.38411811609045 1.16180485595193 0.510980221191073 0.818132243112205 0.272706842737581 0.98171073580916 0.435881368577852 1.16044577908 0.672790415261222 1.23915238232471 0.317861852900428 0.308818582292629 0.295230774632677 0.30283834817634 0.328505632090215 0.29701934318103 0.309746703471443 0.295230774632677 0.319107401347379 0.295230774632677 0.311800850759772 0.295767475440312 0.301667766848604 0.296371000003566 0.30067341014996 0.298726384636933 0.304533508127861 0.308770854248464 0.305261398225524 3 3 + 15041791 15042102 15041938.333 15041342 15042140 + gene protein_coding_gene FALSE TRUE AT3G42990.1 unknown protein -0.334863327653361 -3.20031596608733 0.00856052588455778 1 2.93868151413420 1.81708445134623 -0.334863327653361 0.109183434573803
AT1G49040_at 7.15636210598479 7.30599291252483 6.23695234678618 6.63197844033517 6.4144376791846 6.31607082018966 6.27153964975765 6.77426291886502 6.66896292297331 6.74576985122144 6.149104493073 6.65599016600003 6.4853486800578 6.78060276444466 6.53671476555288 6.5537003903973 6.08871028262689 6.39177372764422 6.57128181287064 0.198608820755584 0.200751802743120 0.211817787405301 0.202208877029742 0.199107942908307 0.215152196130617 0.195861185527513 0.198637069230421 0.222046163625440 0.201947338577893 0.197855656244785 0.205604919385007 0.195861185527513 0.200233189248834 0.195861185527513 0.199056044568665 0.227452616845423 0.205579207731773 0.197183966457039 1 1|0 -|/ 18143091 18144413 18143640.556 18142902 18152649 - gene protein_coding_gene FALSE TRUE AT1G49040.1|AT1G49040.2 SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G23430.2); similar to Os01g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043390.1); similar to WD-40 repeat protein [Chlorobium phaeobacteroides DSM 266] (GB:YP_911315.1); contains InterPro domain DENN; (InterPro:IPR001194); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain dDENN; (InterPro:IPR005112); contains InterPro domain uDENN; (InterPro:IPR005113)|similar to DENN (AEX-3) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35560.1); similar to Os01g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043390.1); similar to PREDICTED: similar to CG6939-PB, isoform B isoform 1 [Tribolium castaneum] (GB:XP_966320.1); contains InterPro domain DENN; (InterPro:IPR001194); contains InterPro domain dDENN; (InterPro:IPR005112); contains InterPro domain uDENN; (InterPro:IPR005113) -0.341970639394851 -3.20013013309046 0.00856334287448455 1 2.93839103273024 13.1970736197433 -0.341970639394851 0.114901222826084
AT2G20450_at 7.50638651472651 7.15208770630877 6.80294014621668 6.71525807980512 6.84116596874532 6.84219542984755 7.30901120627842 7.29724243505865 6.15355047575817 6.25073535437866 5.83306914500159 6.55468094705314 6.19667621935087 6.17783129561942 7.00177384927947 6.04955534205377 6.42496582371426 5.64862543210372 6.47616790677952 0.205769762554143 0.203009519719107 0.205969394088663 0.206056285424164 0.210164303267854 0.205392813205091 0.208868399263318 0.210827748183249 0.214163256058242 0.218639592188946 0.206408022871507 0.206401445959400 0.206086995102394 0.205311508509626 0.201047985159855 0.206444780715639 0.207529842995135 0.213130543084194 0.213454251937569 2 2|0 +|/ 8821177 8822106 8821530.556 8820943 8822334 + gene protein_coding_gene FALSE TRUE AT2G20450.1 60S ribosomal protein L14 (RPL14A) Identical to 60S ribosomal protein L14-1 (RPL14A) [Arabidopsis Thaliana] (GB:Q9SIM4); similar to 60S ribosomal protein L14 (RPL14B) [Arabidopsis thaliana] (TAIR:AT4G27090.1); similar to glycoprotein-like protein [Solanum tuberosum] (GB:ABA40467.1); contains InterPro domain Ribosomal protein L14; (InterPro:IPR002784) -0.286689690819752 -3.19845468312383 0.0085887831392679 1 2.93577201018461 13.3229768537454 -0.286689690819752 0.0631958466524083
AT1G53070_at 1.66963210050307 1.87589254079200 1.56407870720133 1.84688843354404 1.61425494925798 1.96679278322159 1.53742173315669 1.64910586264408 1.55156126560205 1.93974089367933 2.36104010717995 2.95135127934248 2.32328057221766 2.53891692399328 2.65123824924933 2.07519782432379 1.68536579481426 2.48751988554522 1.99397916266105 0.209030725037763 0.213121855416177 0.208597754693496 0.209679077099266 0.211433357999287 0.207209606838619 0.206643409638503 0.208119744124991 0.207674583276815 0.206643409638503 0.206643409638503 0.216037817722267 0.213437526069354 0.211629203923079 0.228953925384494 0.206643409638503 0.215115845699996 0.211698110812545 0.218061422854162 1 1 + 19782266 19782788 19782517.727 19782001 19783041 + gene protein_coding_gene FALSE TRUE AT1G53070.1 legume lectin family protein similar to legume lectin family protein [Arabidopsis thaliana] (TAIR:AT1G53080.1); similar to putative receptor-type protein kinase LRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAC24925.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.310401190650688 3.19804978718532 0.00859494265528519 1 2.93513906679317 3.82184135723879 0.310401190650688 0.0881188128223895
AT4G30770_at 0.618230133667799 0.94057709688769 0.918065884388503 1.10408600936754 0.299700742021774 0.851045953147288 0.557843480550692 0.859537521970328 1.72225486482117 1.85028874558811 0.697156812965202 1.00680029829663 1.43110756840803 1.01285699820937 0.936203180583761 0.948247600944382 1.30877116975217 1.20053850218749 1.91738015362083 0.189315838241322 0.187014274531453 0.190610351033291 0.191902762577524 0.187014274531453 0.193177941453087 0.190339320324504 0.189748660546040 0.188422796641011 0.187869305102465 0.192259303296229 0.19302962430008 0.193182833681033 0.188043211218179 0.191973456648492 0.190319821805234 0.192476314234735 0.189143079551944 0.196170143276802 4 4 - 14986154 14986564 14986352 14986146 14986619 - gene protein_coding_gene FALSE TRUE AT4G30770.1 similar to prothymosin alpha-related [Arabidopsis thaliana] (TAIR:AT5G17590.1); similar to Os11g0195700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067426.1); similar to hypothetical protein LOC_Os12g08150 [Oryza sativa (japonica cultivar-group)] (GB:ABA95957.1) -0.356543366314755 -3.19675442087276 0.00861467871461914 1 2.93311406608897 2.21747827996441 -0.356543366314755 0.126402411227400
AT2G15760_at 3.24325016510663 3.03534919990866 3.85655216373599 3.88196995226566 3.16227971521733 3.58111327540031 2.64766569228102 2.77764177613718 3.55902751288381 3.21580593297715 3.13901378774468 3.3684433643909 3.36776226244332 3.47411277886649 3.22637723523207 3.2629817926414 2.83507389174412 3.15841996467302 3.15941192209018 0.201208520364930 0.201246360691291 0.201818513310834 0.216213378497978 0.197744189840752 0.21052683216198 0.202287859855805 0.204208689777093 0.201556988981772 0.205453779345011 0.19894560577538 0.196413988678341 0.199025328442063 0.197940278849103 0.198353367251303 0.197709055223873 0.202035835086404 0.204604934400860 0.197960172597829 2 2 - 6872897 6873419 6873130.364 6872692 6873959 - gene protein_coding_gene FALSE TRUE AT2G15760.1 calmodulin-binding protein similar to AR781 [Arabidopsis thaliana] (TAIR:AT2G26530.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83385.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 0.306055040181537 3.19670875143480 0.00861537536933882 1 2.93304267121899 6.54344687119028 0.306055040181537 0.0841024672857334
AT2G18120_at 1.40221518169449 1.88859202281129 1.32929133559513 0.610551904101345 1.38248392469172 1.5935516922231 2.59618886378577 2.02386217497282 1.21798035799513 1.60569162931130 1.29729139966171 1.44562173037213 1.42377578503302 1.37924332873390 1.18877107892682 1.20060833270316 1.47596913649611 1.71526684765441 1.74100400075983 0.236410759292604 0.251193071042210 0.234928799256103 0.245142318628115 0.231152864732615 0.243899535238490 0.234036436554842 0.265658198971716 0.249793453886732 0.241001992985044 0.242349357687208 0.239920300887212 0.238159615941954 0.234248579173860 0.233018074496495 0.231848228285531 0.235570840027683 0.239825492656719 0.233474000915623 2 2 - 7883827 7884585 7884245.1 7883697 7884763 - gene protein_coding_gene FALSE TRUE AT2G18120.1 SRS4 (SHI-RELATED SEQUENCE 4) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. similar to STY2 (STYLISH 2) [Arabidopsis thaliana] (TAIR:AT4G36260.1); similar to hypothetical protein [Thellun (GB:ABB45842.1); contains InterPro domain Zinc finger, LRP1-type; (InterPro:IPR006510); contains InterPro domain LRP1, C-terminal; (InterPro:IPR006511); contains InterPro domain Protein of unknown function DUF702; (InterPro:IPR007818) -0.439742527202180 -3.19408136128034 0.0086555509068901 1 2.92893511719781 3.05953069630266 -0.439742527202180 0.183573092252957
AT2G01530_at 2.78389977099554 2.79734531973017 3.15553836136150 3.12659610669811 3.65045370743404 4.1390386733559 2.62080926167140 2.92916192625592 3.06125403729787 3.28909119647753 3.05443032817599 3.27260917869024 3.31960602639531 3.10934199150794 3.25533316618756 3.03586477900637 3.32438251598566 3.09571298171222 3.465307648793 0.218740849583362 0.220136866843054 0.231458361853596 0.235837527585845 0.227122279067754 0.245484574983603 0.234180057028053 0.229914864798362 0.225916901999979 0.220920234564639 0.222332937480921 0.224690351449181 0.21747875892128 0.21747875892128 0.222745265847173 0.220448071711415 0.219996944486233 0.238178673748113 0.229150356231015 2 2 + 239816 240324 240181.273 239704 240519 + gene protein_coding_gene FALSE TRUE AT2G01530.1 major latex protein-related / MLP-related Identical to MLP-like protein 329 (MLP329) [Arabidopsis Thaliana] (GB:Q9ZVF2); similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT2G01520.1); similar to ripening-induced protein [Fragaria vesca] (GB:CAA04770.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.323314234658661 3.1931409112123 0.00866997760840682 1 2.92746477796639 6.37800259851139 0.323314234658661 0.100134978214573
AT4G17300_at 7.66823205803572 7.75471668435066 7.41124544700398 7.25842429772069 7.35826307475905 7.09348943888294 8.04814712422672 8.05232145362523 8.00447733236664 7.86560736047642 7.85743973415382 7.91385760803059 7.51522304992609 7.77633121616929 8.63181264679794 7.99912470164822 7.63751345405148 7.92981746879873 7.7297638078488 0.138713736161959 0.132402173101379 0.140925825176765 0.145493513036725 0.137943365950461 0.144694649339479 0.134026924084303 0.136373660141770 0.143627910075364 0.136967103465878 0.139434185947029 0.132402173101379 0.138862069283777 0.136006255207079 0.148332001734988 0.137962130054746 0.139664510098120 0.138321885639455 0.133796730754489 4 4|0 +|/ 9683782 9684761 9684219.857 9681551 9684984 + gene protein_coding_gene FALSE TRUE AT4G17300.1 NS1 (OVULE ABORTION 8) Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis. Identical to Asparaginyl-tRNA synthetase, chloroplast/mitochondrial precursor (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS) (SYNO) [Arabidopsis Thaliana] (GB:O48593;GB:O23573); similar to SYNC1, ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G70980.1); similar to Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) [Medicago truncatula] (GB:ABE80885.1); similar to putative aspara (GB:BAC15528.1); similar to aspara (GB:ABD65116.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Asparaginyl-tRNA synthetase, class IIb; (InterPro:IPR004522); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) -0.279737473709095 -3.19256468468884 0.00867882911746024 1 2.9265638609058 15.4677330232478 -0.279737473709095 0.0549857597968542
AT3G03910_at 2.20726776762417 2.27160135587563 2.39039751224095 2.10933468588181 2.01134725671392 2.15674104906881 3.10167324814685 3.06064659947949 2.86344938639657 2.85279089649004 2.68892535616089 2.14577514374476 2.69357317073843 3.04914535822058 2.80234128588464 3.55470209551173 2.50788528460373 2.89114079574348 2.86268840262256 0.215438734165342 0.221219562895048 0.215531991346022 0.216320454527685 0.210728687970676 0.218672665867261 0.214633225243262 0.210124813866786 0.217984599548306 0.223181813451636 0.216529084791357 0.210748911543433 0.213242520774548 0.210124813866786 0.210124813866786 0.214456329750283 0.216750318798494 0.210124813866786 0.222910700712037 3 3 + 1008009 1008824 1008478.636 1006849 1009025 + gene protein_coding_gene FALSE TRUE AT3G03910.1 glutamate dehydrogenase, putative Identical to Probable glutamate dehydrogenase 3 (EC 1.4.1.3) (GDH 3) (GSH3) [Arabidopsis Thaliana] (GB:Q9S7A0); similar to GDH2 (GLUTAMATE DEHYDROGENASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07440.1); similar to GDH1 (GLUTAMATE DEHYDROGENASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G18170.1); similar to glutamate dehydrogenase [Nicotiana tabacum] (GB:CAD12373.1); similar to glutamate dehydrogenase 1 [Glycine max] (GB:CAI53673.1); similar to Glutamate dehydrogenase B (GDH B) (GB:Q9LEC8); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase; (InterPro:IPR006095); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, dimerisation region; (InterPro:IPR006097); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, C terminal; (InterPro:IPR006096) -0.280649475324426 -3.19154942643678 0.00869444701888002 1 2.92497649039904 5.23929066262683 -0.280649475324426 0.0563312638107631
AT2G36980_at 1.33786535133246 1.96024596916732 1.15199735651774 1.73722419521183 1.25817417661647 1.11859946231587 2.05732093003956 1.69605017113535 2.07543735867795 1.94141142662896 1.13823839918716 1.79587242299387 1.68112915315332 1.67164121134292 1.78978031689952 1.57714311469425 1.70988204776953 1.82719836732916 2.03148208742729 0.234286629273953 0.23132647090756 0.229590723580645 0.233985506186819 0.236586664499216 0.227187986036395 0.238644995150541 0.232506271790294 0.238343136518488 0.234167140107180 0.228559102193282 0.227307305712412 0.236026807148274 0.227187986036395 0.236342417508097 0.227187986036395 0.237610201782256 0.231331139698947 0.232289849124128 2 2 + 15539576 15540092 15539881.455 15538240 15540344 + gene protein_coding_gene FALSE TRUE AT2G36980.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46673.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.406810734746689 -3.19104786054028 0.00870217323678122 1 2.92419226756107 3.37217016158338 -0.406810734746689 0.162325435928819
AT1G72150_at 12.3567667153864 12.4863095352064 12.6863728048657 12.6993126575691 13.1303051633848 13.0010543703343 12.6070025891487 12.5645818287972 12.8445279609719 12.6735164252766 13.1469024025951 12.6980508944073 13.1850811000864 13.1443109782074 12.4697715414218 12.9206838542141 12.8944914701603 13.0062068748234 12.8115693077015 0.075092540562024 0.0741316742893963 0.0750695557706846 0.0798200079268662 0.0769714404678355 0.0803229294735454 0.0751569979810872 0.073661169042988 0.0792277164726556 0.0749069430052859 0.0794971906577531 0.0741044678430072 0.073435382710988 0.077137789447514 0.0791256104443304 0.0735679060691665 0.0844275256079429 0.0753009818592739 0.0744381915382759 1 1|0 +|/ 27153366 27154252 27153879.7 27152122 27154642 + gene protein_coding_gene FALSE TRUE AT1G72150.1 PATL1 (PATELLIN 1); transporter novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes Identical to Patellin-1 (PATL1) [Arabidopsis Thaliana] (GB:Q56WK6;GB:Q9C7U0); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G22530.1); similar to putative cytosolic factor [Trifolium pratense] (GB:BAE71201.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.266122786704973 3.19072500080963 0.00870715032167408 1 2.92368745444506 25.5463258518230 0.266122786704973 0.0325848974967118
AT1G09600_at 1.24700483906268 1.43176133514767 1.96333518622333 1.58049900570796 1.64519534064839 1.75173184429496 1.77099787979970 1.4152446468436 1.28495182224952 1.57676945203834 1.28757640439052 1.76709734584098 2.02010649324255 1.79219551321947 1.78939620192689 1.74882755621151 2.06926548398466 1.91269735413558 1.41882835978927 0.221815249901969 0.223358737748741 0.223307308926476 0.220752311549927 0.220752311549927 0.22758401208352 0.220752311549927 0.220752311549927 0.233308914458378 0.227000729881797 0.222763953112899 0.220989240638126 0.226582934901416 0.221298466229259 0.220752311549927 0.221695638091049 0.225118680073334 0.225829644197516 0.222232435793052 1 1 + 3110687 3111283 3110950.182 3108619 3111320 + gene protein_coding_gene FALSE TRUE AT1G09600.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G57700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53050.1); similar to Os08g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060831.1); similar to transposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96101.2); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.320241792549279 3.1906819211741 0.00870781463996237 1 2.92362009614715 3.2133438457884 0.320241792549279 0.097681485382648
AT1G14850_at 3.58623411751512 3.87861406747529 3.12470027619278 3.24217319340266 3.02726608706063 3.36613054936864 3.38854440358230 3.82361170716383 3.00008539092933 3.04751545844449 2.83432175685806 2.80302381193238 3.10675702914963 2.56633133413407 3.03130868098662 3.26273553774829 3.0372146715357 3.23049788135465 3.47506762940671 0.238890541969697 0.236524630485060 0.236771784236435 0.237492070190205 0.242696374939114 0.248719690586399 0.237475891657815 0.246894599189599 0.246083858360831 0.244821460586093 0.242316148577314 0.240185267404443 0.244302693149729 0.237018400296429 0.239085728934321 0.234292826615860 0.240309696224500 0.248309134046770 0.233735599223851 1 1 - 5116924 5117670 5117332.909 5116691 5123254 - gene protein_coding_gene FALSE TRUE AT1G14850.1 NUP155 (Nucleoporin 155) Encodes a protein similar to nucleoporin, a a major component of the nuclear pore complex (NPC) involved in cellular nucleo-cytoplasmic transport similar to Os06g0305200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057468.1); similar to Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) (ISS) [Ostreococcus tauri] (GB:CAL56174.1); contains InterPro domain Non-repetitive/WGA-negative nucleoporin; (InterPro:IPR004870) -0.334691267862853 -3.19011797622411 0.00871651582031918 1 2.92273831732733 6.50878263233145 -0.334691267862853 0.109913364848745
AT3G51770_at 4.12240099499756 4.65900838782040 4.0467715501882 4.83336127908559 4.12271595057106 4.58264736957638 3.90548681291479 4.9811322579567 4.04148954347311 3.91278583413766 5.06246175528246 5.0575674291226 4.97542850371134 5.44278459308376 4.91629144052934 5.20580644519258 4.65584788133243 4.05430607275717 3.34462201234672 0.228285021334235 0.226637871657704 0.231666119811654 0.230967533033304 0.230709866401664 0.231027424219036 0.230008852865472 0.230883938296543 0.228666324276722 0.22150819373219 0.227573578706038 0.224824963052359 0.232341658693596 0.240930651785136 0.224736305680468 0.221682451433536 0.22961870237321 0.229163255190991 0.241091474670516 3 3|0 -|/ 19211342 19212563 19212104.1 19210760 19215441 - gene protein_coding_gene FALSE TRUE AT3G51770.1|AT3G51770.2 ETO1 (ETHYLENE OVERPRODUCER 1) Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS Identical to Ethylene-overproduction protein 1 (ETO1) [Arabidopsis Thaliana] (GB:O65020;GB:Q6PWY3); similar to EOL1 (ETO1-LIKE 1), binding [Arabidopsis thaliana] (TAIR:AT4G02680.1); similar to EOL2 (ETO1-LIKE 2), binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G58550.1); similar to TPR Domain, putative [Medicago truncatula] (GB:ABE91127.1); similar to ethylene overproducer-like 1 [Lycopersicon esculentum] (GB:AAZ08351.1); similar to ETO1-like protein 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94447.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain BTB; (InterPro:IPR000210) 0.567189779536787 3.18997099863650 0.0087187850079917 1 2.92250850221162 8.75049602294498 0.567189779536787 0.261032807876585
AT4G32660_at 8.16600535620862 7.92277161379924 7.95398608796676 7.70598987881675 8.2769603679432 7.84835321185033 8.37707088329446 8.11320787378945 8.33679489292333 8.40672441336974 7.90511129172464 7.85329401688502 7.818659466936 7.8605744862 7.8485988613943 8.00481893023108 7.82250680173495 7.88858209602758 8.26509118301298 0.122168664795356 0.118310588334433 0.124325194121239 0.120582602061647 0.123166240898581 0.125662426632894 0.123621967532784 0.121867906256672 0.119888052992411 0.123670537869535 0.116697180319650 0.120578886316738 0.117908455813567 0.123269664476628 0.131406421366022 0.118118866362507 0.125775679959234 0.124259619194464 0.122300358016381 4 4|0 +|/ 15758175 15759069 15758608.111 15756133 15759319 + gene protein_coding_gene FALSE TRUE AT4G32660.1|AT4G32660.2|AT4G32660.3 AME3; kinase Encodes protein kinase AME3. Identical to Serine/threonine-protein kinase AFC3 (EC 2.7.12.1) (AFC3) [Arabidopsis Thaliana] (GB:P51568;GB:Q39185); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase (GB:AAA57119.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to Serine/threonine-protein kinase AFC3 (EC 2.7.12.1) (AFC3) [Arabidopsis Thaliana] (GB:P51568;GB:Q39185); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase (GB:AAA57119.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.329688398836168 -3.18968951674441 0.00872313248431609 1 2.92206837252726 16.1512790293721 -0.329688398836168 0.105831459775581
AT1G72200_at 1.89285963823447 1.75666339232084 2.79612582816346 2.90844014206535 2.37128710861713 2.50512525915167 2.4000622658154 2.81019072720319 1.65821998625743 1.43302632317711 1.05457680006316 0.989964669871636 2.21681484786787 2.10909101292926 1.21068457295591 1.6924841273057 2.53818166073935 1.86394024964273 1.51689414024719 0.213839783436558 0.215506433791363 0.215314548407385 0.219222187030273 0.216726779847488 0.213731145927126 0.217305490155008 0.217836797821210 0.223305499645919 0.21579304298073 0.213662420010304 0.211709881078486 0.214037348888934 0.215488849459176 0.214073100522149 0.215631456656083 0.226960908913809 0.211709881078486 0.211709881078486 1 1 - 27173604 27174120 27173851.818 27173457 27174983 - gene protein_coding_gene FALSE TRUE AT1G72200.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1N precursor (ATL1N) [Arabidopsis Thaliana] (GB:Q84W40;GB:Q9C7T5); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22500.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE77983.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.301860502358653 3.18930779486705 0.00872903168303607 1 2.92147150017713 4.05285132481270 0.301860502358653 0.0806668523591546
AT3G56040_at 7.68617624787432 7.45762135382809 7.24478557023106 6.68681362665395 7.71124610269188 7.11091708731848 8.62669840887459 8.009096580757 8.30468923233922 8.69096235921518 8.47929675715043 8.8996279688672 8.09712444186608 8.52604661526044 8.39109747465159 8.69242567975648 8.12582697911077 8.13485726673883 8.60813145950407 0.142110498657093 0.138175074310698 0.15227831427581 0.151281972170855 0.138819872515408 0.144160577907887 0.138024609625066 0.138961091143756 0.136742785584979 0.137497734080990 0.140794847080004 0.141108838912036 0.137650401398782 0.140207406942006 0.146708724462225 0.141039152040199 0.152441017715495 0.141046440678887 0.138141241870720 3 3 - 20803692 20804635 20804113.909 20803456 20808551 - gene protein_coding_gene FALSE TRUE AT3G56040.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47007.1); similar to Os05g0468600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055800.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448) -0.436382001768626 -3.18811258769560 0.008747528864818 1 2.91960259361466 16.0431104964177 -0.436382001768626 0.181945971285651
AT4G05000_at 6.8387502273017 7.60791282194204 7.12870264173787 7.08211374804471 7.66310868529745 7.52236265624886 6.42272754958431 7.12088639322451 4.56147102576642 5.6870308380293 5.53548466310826 5.97851488923266 6.47809517950966 5.94203654886351 5.20218596304917 5.79999202428749 5.85207529702269 5.78433473435664 5.65747405131311 0.275313122549192 0.264572992968021 0.271392874155957 0.267241661008581 0.267281571256423 0.275334152330898 0.272344414095994 0.273919416298459 0.305090484826088 0.274672143750814 0.278396903473811 0.264572992968021 0.27299163394298 0.285010825155192 0.283468484113586 0.270417493695789 0.289950846420205 0.274422132704825 0.265619338450828 4 4 + 2564063 2564542 2564275.455 2563042 2564738 + gene protein_coding_gene FALSE TRUE AT4G05000.1|AT4G05000.2 vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein Identical to Vacuolar protein sorting-associated protein 28 homolog 1 [Arabidopsis Thaliana] (GB:Q9S9T7); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G21560.3); similar to hypothetical protein DDBDRAFT_0186436 [Dictyostelium discoideum AX4] (GB:XP_638318.1); similar to Os01g0781000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044441.1); contains InterPro domain Vacuolar protein sorting-associated, VPS28; (InterPro:IPR007143) 0.435550312772453 3.18613932463224 0.00877815455248541 1 2.91651692442491 12.7351115324885 0.435550312772453 0.181585132934116
AT4G01897_at 8.4185730482552 8.55300722450954 8.42971247920424 8.8026815839702 9.15841999204636 8.6606951902778 9.05421364187215 9.0333177060182 8.3216323535298 8.51661927989053 9.1604425729765 8.8712202499369 8.9062694507911 9.19936771838888 8.87012419935913 9.22687369162729 8.69801962524457 9.00744125459573 8.12665230332358 0.159918093470714 0.146365277036569 0.158509044253471 0.148501255035849 0.145762313841774 0.153493685972809 0.141678759335242 0.145506361640007 0.146203847296233 0.147000714025769 0.141678759335242 0.142792072818542 0.141678759335242 0.14200509736381 0.144118288802481 0.146072690051367 0.161614416458609 0.143432771704819 0.156956185914611 4 4|0 -|/ 820491 821380 820821.3 820336 821505 - gene protein_coding_gene FALSE TRUE AT4G01897.1 similar to Protein of unknown function DUF952 [Medicago truncatula] (GB:ABE87749.1); contains InterPro domain Protein of unknown function DUF952; (InterPro:IPR009297) 0.334467302997291 3.18488449093904 0.00879768663388433 1 2.9145546001009 17.4208798537424 0.334467302997291 0.110178227675042
AT4G18890_at 3.49180962248858 3.51387194344944 3.59249495726164 3.71281618564875 3.03545691591433 2.83878440834460 2.66004575354076 2.53331391075685 3.04984157690303 3.27236898666125 3.76914652179923 3.16410438970354 3.6544633712716 3.31665079335067 4.01598124554076 3.09224711126886 2.94679950859563 3.60046706038081 3.11204527475347 0.24479654296197 0.244150570411845 0.238256319891836 0.255881165999022 0.244805226270326 0.243378869741563 0.242429985022606 0.239285364902431 0.237616487430765 0.243161011927343 0.242225717076256 0.266195581018389 0.237616487430765 0.239122069033113 0.237616487430765 0.24101072690523 0.24065742536455 0.238703601165146 0.246937086679766 4 4 + 10354672 10355104 10354874 10352633 10355566 + gene protein_coding_gene FALSE TRUE AT4G18890.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 3 (BEH3) [Arabidopsis Thaliana] (GB:O49404); similar to brassinosteroid signalling positive regulator-related [Arabidopsis thaliana] (TAIR:AT1G78700.1); similar to Os01g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042330.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB33003.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) 0.272679181683199 3.18417373951971 0.00880876940132188 1 2.9134430869346 6.46719143534802 0.272679181683199 0.04568937413459
AT4G39990_at 6.78061344082706 7.1115108002192 6.65681588006274 6.8640621499309 7.44880372089484 7.09100784072799 7.7921899786219 8.08866194252447 8.20143681956208 7.9011591795804 8.52082850046313 8.0437529745651 8.12340944885385 7.94012046678475 7.94286125830416 7.17102529389376 7.0253950284758 7.56534209258485 7.95610065430932 0.157040771359108 0.149668424042096 0.157816720899872 0.159089338545526 0.153244535513599 0.159442278142338 0.16678406312847 0.155141734828412 0.157129666663381 0.1548345301095 0.150069953450324 0.156008497267657 0.153751138788583 0.155014945825414 0.153412136572491 0.16014164567144 0.158992662728414 0.158392962139148 0.147610021521834 4 4 + 18542805 18543745 18543447.455 18542545 18543972 + gene protein_coding_gene FALSE TRUE AT4G39990.1 ATGB3 (GTP-BINDING PROTEIN 3); GTP binding GTP-binding protein ATGB3 similar to AtRABA4a (Arabidopsis Rab GTPase homolog A4a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G65270.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02110.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.328022655401981 -3.18282807463400 0.00882979126244655 1 2.91133859838733 15.1347869362968 -0.328022655401981 0.105031150572987
AT4G24200_at 5.09217184279287 4.94491264339973 4.7732902045556 5.11052473439174 5.29690536847752 5.55921833768128 4.69364407130422 4.9304713588057 4.72538730116063 3.71002216961938 4.46581993226929 4.64499221804758 5.15059099142414 5.17728238597544 4.20872896196976 4.70337822274614 4.44964205609805 4.17795070631280 4.38637843780487 0.224511984346789 0.217064981688078 0.224615246345510 0.217524808758823 0.218633533309869 0.233602251639997 0.221204755108259 0.219646078621552 0.226397097091733 0.233576818785366 0.225092963161412 0.225053667045307 0.23106068850248 0.221181426349065 0.232861829132933 0.217064981688078 0.224161187103298 0.238870575829012 0.217064981688078 4 4 - 12556985 12557354 12557181.556 12556666 12560954 - gene protein_coding_gene FALSE TRUE AT4G24200.1 similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48060.1); similar to Os06g0631300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058124.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38587.1); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990) 0.309026781847343 3.18198100748297 0.00884305020735415 1 2.91001382665585 9.4982560637846 0.309026781847343 0.088293103041024
AT1G23890_at 3.04710833561133 3.46415562671928 3.03619634872834 3.35030135792008 4.57720821148778 3.93191950029501 3.58554186421978 3.86636856192173 2.75577359106521 3.07702337042869 3.43745494388003 3.87571407437742 3.25698995298551 3.5666811816565 3.29741591670143 3.5542117014252 3.20783047703897 3.31061108151626 2.84349958342148 0.265367802346975 0.269785510471911 0.265477094965332 0.269106115700464 0.267581085732773 0.267092949138217 0.261635974004318 0.264639070981789 0.293318260442506 0.25701388398612 0.273954821010019 0.261406773182374 0.263875723248759 0.275193082382908 0.271987029484787 0.260096803918117 0.284103801573945 0.256910346054321 0.263996049126225 1 0|1 /|- 8439343 8439732 8439524 8438755 8440855 - gene protein_coding_gene FALSE TRUE AT1G23890.1|AT1G23890.2 NHL repeat-containing protein similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G14860.2); similar to Os06g0269300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057356.1); similar to Os08g0414600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061804.1); similar to NHL repeat [Medicago truncatula] (GB:ABE85368.1); contains InterPro domain Soluble quinoprotein glucose dehydrogenase; (InterPro:IPR011041); contains InterPro domain NHL; (InterPro:IPR013017); contains InterPro domain NHL repeat; (InterPro:IPR001258) 0.389688787691159 3.17973294308663 0.00887833679995346 1 2.9064978094203 6.77258123311431 0.389688787691159 0.151642851378388
AT2G03530_at 6.61584772834986 7.31840315264851 6.8696928383125 6.93646489809071 7.98754346823555 7.1729141128033 5.11149072571841 4.97852332886191 6.00813851479809 6.45288318288896 6.36352681568594 6.71611040070695 6.53738611714327 6.25767000400702 5.50601641160753 6.43656440229445 5.76591812062496 5.3985729006265 6.94789242111658 0.222557144057368 0.227989320796522 0.228052358714951 0.214407467043994 0.225438813454055 0.230917018255795 0.225273140616236 0.227708960386068 0.229630380375284 0.221086883764359 0.217156581877062 0.218678710076666 0.213769863375622 0.220594427418295 0.229981374936192 0.215386666504863 0.241877682574273 0.227543573933062 0.213769863375622 2 2 + 1072938 1073476 1073210.455 1071591 1073563 + gene protein_coding_gene FALSE TRUE AT2G03530.1|AT2G03530.2 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. Identical to Ureide permease 2 (AtUPS2) (UPS2) [Arabidopsis Thaliana] (GB:Q9ZQ89); similar to ATUPS1 (Arabidopsis thaliana ureide permease 1), allantoin transporter [Arabidopsis thaliana] (TAIR:AT2G03590.1); similar to Ureide permease 2 (AtUPS2) (GB:Q9ZQ89); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834) 0.444335101225855 3.17790761148331 0.0089070932005846 1 2.90364279103861 12.9200393747217 0.444335101225855 0.187933217559278
AT3G26910_at 3.41301906990019 3.50476863058151 4.34869721746086 3.92352841045681 3.80536547680868 3.66374527137567 3.43170631284800 3.04928204870606 4.25894443375796 3.09660686191286 3.72865292645988 3.68546369274502 3.41221016981601 4.02047383156326 3.41628569240115 3.45577374720888 3.33334457870752 3.92875190476643 3.31730105582497 0.209367943598095 0.206573928146232 0.204376025988474 0.202655036616365 0.202813116283872 0.206347917488656 0.202949456211886 0.209862454552024 0.222877312066788 0.207166659081164 0.206552444979504 0.210035310358456 0.214278034650089 0.201903356209253 0.201903356209253 0.204904405755755 0.210796128166863 0.202247380982273 0.208810902915616 3 3 - 9916875 9917379 9917099.727 9916365 9919980 - gene protein_coding_gene FALSE TRUE AT3G26910.1|AT3G26910.2 hydroxyproline-rich glycoprotein family protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G41100.2); similar to Os09g0509300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063628.1); similar to Os04g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052655.1); similar to hydroxyproline-rich glycoprotein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38129.1) 0.325321097988244 3.17787616986694 0.00890758936205338 1 2.90359361163225 7.23263256399578 0.325321097988244 0.103180510468245
AT4G00550_at 5.86262041690468 6.54292773915716 6.52121674437686 6.54864582478423 6.64522695285596 5.53057823814825 5.48175615165635 5.5402136560006 4.95429055856216 4.20833588135743 5.356205137636 4.84406891187771 5.69086494297046 5.36786692783534 3.92527908990856 5.73539693872684 5.51082408368406 5.00377731314474 4.70094821426251 0.226614854216545 0.224170026662723 0.225790847252561 0.225695385105584 0.227139483952507 0.250327325744381 0.224969811256694 0.221972817562687 0.237032581997016 0.223434037429908 0.223517306820755 0.22958020221677 0.221591943799811 0.222408606818929 0.236142213108016 0.226431932441053 0.223051097736720 0.227281744374173 0.227144546434260 4 4 - 238184 238645 238414.364 237967 240500 - gene protein_coding_gene FALSE TRUE AT4G00550.1 DGD2 (digalactosyldiacylglycerol synthase 2); UDP-galactose:MGDG galactosyltransferase/ transferase, transferring glycosyl groups encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane. Identical to Digalactosyldiacylglycerol synthase 2, chloroplast (EC 2.4.1.241) (DGD2) [Arabidopsis Thaliana] (GB:Q8W1S1;GB:O65264;GB:Q56ZV5;GB:Q8W1S0); similar to DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1), galactolipid galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11670.1); similar to Digalactosyldiacylglycerol synthase 2, chloroplast (GB:Q6DW75); similar to Digalactosyldiacylglycerol synthase 2, chloroplast (GB:Q6DW73); similar to Os03g0214400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049371.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.50631565797028 3.17781955324566 0.00890848286611449 1 2.90350505463146 10.984386700294 0.50631565797028 0.226260581060269
AT1G12240_at 9.26740548331357 9.31442605435306 9.35513120154991 9.24264722234943 9.58569938445466 9.10222295316314 10.2849928004793 10.0821062289104 9.32946755878186 9.55552495605738 9.02453372278284 9.31595269010735 9.3712049135271 9.26045533976872 9.25359331869461 9.7333737679374 9.53066539061497 9.23474920995798 9.77232267003555 0.115671514607338 0.109825942541162 0.115085350895718 0.120739484458085 0.111810140706492 0.119513353550911 0.117973568505966 0.120716293945043 0.122864310700282 0.110574218802284 0.119512385672966 0.110981294310739 0.113436375581943 0.11462498180135 0.12107827352489 0.116173103212115 0.122198900316038 0.113974171972075 0.117340960170488 1 1|0 +|/ 4156690 4157410 4156999.1 4153650 4157642 + gene protein_coding_gene FALSE TRUE AT1G12240.1 ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds similar to beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar [Arabidopsis thaliana] (TAIR:AT1G62660.1); similar to acid invertase [Brassica oleracea] (GB:AAG36943.1); similar to acid invertase [Brassica oleracea] (GB:AAG36942.1); similar to soluble acid invertase [Pyrus pyrifolia var. culta] (GB:BAF35859.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) -0.313839901084595 -3.17735798939207 0.0089157705056702 1 2.90278309339506 18.9758311356378 -0.313839901084595 0.0931567899105513
AT2G39040_at 1.15375941578012 1.50793695713496 0.853528853591617 0.580699547849581 0.849361395727531 0.989256704755192 1.09568474545202 1.09411429593696 1.70118345650049 1.18509073639178 1.05497220345749 1.13817531343858 1.30124494380596 1.10496382971151 1.46673863548529 0.94773568003785 1.39855819876000 1.19427034529728 1.33897171807385 0.245961545606252 0.242016801873812 0.236611920067208 0.240674912937910 0.241193846501852 0.244139947883682 0.242484245753007 0.244797089484945 0.245220104563723 0.249943676251041 0.237658249484193 0.236243867216122 0.238858728539211 0.239095922986343 0.253845012682370 0.236243867216122 0.24033432988397 0.248393877293342 0.242626905293420 2 2|0 -|/ 16306541 16307458 16306919.5 16306429 16308305 - gene protein_coding_gene FALSE TRUE AT2G39040.1 peroxidase, putative Identical to Peroxidase 24 precursor (EC 1.11.1.7) (Atperox P24) (ATP47) (PER24) [Arabidopsis Thaliana] (GB:Q9ZV04); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis thaliana] (TAIR:AT1G05260.1); similar to cationic peroxidase isozyme 38K precursor [Nicotiana tabacum] (GB:BAA07663.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.301122569000582 -3.1772797179507 0.00891700693521518 1 2.90266066315884 2.32016658823081 -0.301122569000582 0.0810684403137286
AT1G09820_at 3.87446480186526 3.92786956543255 4.28206565935368 3.98286249929765 4.46851276728789 4.04091047014439 4.16734321268619 4.14363844314670 3.76581565406794 4.04885237482338 4.21208973850418 4.60149393366749 4.48744292238147 4.23931192702183 4.57649650919776 4.43872143108744 4.38924127529499 3.98985624657159 3.91380820271485 0.23969497085322 0.237103087614504 0.245678601091624 0.237100869230239 0.250791172182594 0.240858505491338 0.235954523787545 0.22918345449061 0.248819667197525 0.232225959022519 0.241905640779909 0.231398051354657 0.235491028923096 0.235061305499915 0.235138849381054 0.235981666713599 0.253540747043816 0.234648683548589 0.231715994805125 1 1 - 3190597 3191112 3190810 3190290 3192416 - gene protein_coding_gene FALSE TRUE AT1G09820.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE84479.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.311299257001008 3.1768218021969 0.00892424397856686 1 2.90194439741506 8.24912033998574 0.311299257001008 0.0908792806817307
AT3G11060_at 1.28561059244210 1.14905511872682 1.38759474432063 1.04830724149060 1.32921626495293 1.08163178849449 1.71011827297486 1.38594748460856 1.71390356060918 1.86038386761182 1.19866640570391 1.17518646605732 1.39800426596826 1.15313876033296 1.21885384059569 1.50283819938717 2.00398333866071 1.23501014784606 1.88848380924855 0.205705578769646 0.205705578769646 0.205705578769646 0.208560615236243 0.205705578769646 0.205705578769646 0.210755290288492 0.213284825612749 0.213056857935871 0.211441119825862 0.209822196344085 0.209160169933419 0.205705578769646 0.210875154167695 0.212000107343815 0.212824472054746 0.220602671535983 0.212351029651700 0.216432684250983 3 3 - 3466361 3466878 3466571.636 3466309 3466950 - gene protein_coding_gene FALSE TRUE AT3G11060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06545.1) -0.315604462563800 -3.17668657065815 0.00892638236091577 1 2.90173286829302 2.88800215044747 -0.315604462563800 0.094809349127796
AT2G26450_at 2.60132894022459 2.21244696504784 2.16084863110355 2.33418903722486 2.05969467169655 1.97021415939833 2.02932907277185 2.4652867134636 3.25896664591225 2.90047298058369 2.76349174732083 2.27115262764061 2.64395244128094 2.16228113812452 2.74199087031067 2.03547075877675 2.51310033886430 2.57353297648813 2.61748324893924 0.206255215727318 0.205423694098218 0.20278647695793 0.205444925812755 0.209242507145659 0.206304341352699 0.208002911830764 0.212363136327783 0.211996670045514 0.207868364879427 0.203202945498034 0.20278647695793 0.204519673832590 0.209235014971245 0.20450021897668 0.206324055150038 0.20511874511016 0.20278647695793 0.209648328870475 2 2 + 11259928 11260487 11260199.909 11258198 11260690 + gene protein_coding_gene FALSE TRUE AT2G26450.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G33230.1); similar to pectin methylesterase [Salix (GB:BAA89480.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.329190322074349 -3.17612861436686 0.00893521068878073 1 2.90086010487502 4.92354855928102 -0.329190322074349 0.106585646387205
AT3G60410_at 4.78216425304966 4.80575417958265 4.65677724288293 4.66764434216203 4.82423871656494 4.67045857910326 4.63292616553731 4.55225508435214 4.02668925841513 4.16752441845394 4.99076318754993 4.6903705901907 4.74579175695458 4.84266710952305 4.76746555383069 4.44219949427863 4.94415671908679 3.75703414469500 4.19943688767101 0.193747272777783 0.194514348237653 0.197358576958642 0.19632097989507 0.199864701486248 0.208916231002742 0.199440139619178 0.208566167844913 0.212120873302484 0.195844456866504 0.194102056704061 0.212220174981856 0.192763167731249 0.200719676105178 0.199598779079620 0.193910665991729 0.207913510870202 0.198996470306413 0.199138050909492 3 3 + 22342963 22343606 22343181.818 22342460 22344627 + gene protein_coding_gene FALSE TRUE AT3G60410.1|AT3G60410.2|AT3G60410.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25370.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83698.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) 0.263922007107413 3.17597875517171 0.00893758336378556 1 2.90062569062273 9.08841378258455 0.263922007107413 0.0303861186665755
AT3G50050_at 3.73150825100325 4.01240050473662 3.76633930848824 3.79537809826681 3.43067211219825 3.91383733497574 3.12888612069864 3.50475710075214 3.73938304865131 3.88269765109265 4.39391274957141 4.46805129243079 4.11490363628403 4.72087334406616 4.52075121418369 4.32187095753703 4.49485482794736 4.47207246035601 4.04079784706044 0.193289494974579 0.195156376035532 0.203155579614884 0.204606196981260 0.202961794495537 0.20371010082231 0.203063445954918 0.199206009047677 0.205147002833873 0.197472588793119 0.193289494974579 0.197484912147458 0.197565672935625 0.203859525991137 0.211957331756202 0.195502146364924 0.196457333574257 0.193289494974579 0.194886117638811 3 3 - 18565227 18565994 18565713.909 18564967 18568192 - gene protein_coding_gene FALSE TRUE AT3G50050.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G43100.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE87026.1); similar to Os07g0592200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060161.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.341476923606762 3.17472020778998 0.00895753483367873 1 2.89865699468598 7.82349110017256 0.341476923606762 0.116663917677877
AT2G43750_at 10.1611866037765 10.3300737328169 9.98537531892282 9.81944408550766 10.5230885231284 10.0403691883551 11.1968167142765 10.9828491452670 10.7515685468076 11.0944201636496 10.8142917898676 11.0473456745448 10.6012497379726 10.6716502981499 11.0305325928559 10.6853617365581 10.7583640688320 10.9113908307312 10.8001647019691 0.0803068968463949 0.0778171831492835 0.078696548949053 0.0842446541315673 0.077478454150182 0.0797589165118272 0.0794590176521143 0.0770000908078386 0.0844829199860519 0.0815368104138602 0.0855697772730778 0.0770000908078386 0.0787982017034219 0.0816407182797938 0.0790450528154036 0.0779987781208193 0.0810608410774176 0.0789110368134597 0.0774959650301399 2 2|0 -|/ 18136711 18138380 18137681.857 18136488 18139629 - gene protein_coding_gene FALSE TRUE AT2G43750.1 OASB (CYSTEINE SYNTHASE 1); cysteine synthase Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Identical to Cysteine synthase, chloroplast precursor (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) (AtCS-B) (cpACS1) (At.OAS.7-4) (OASB) [Arabidopsis Thaliana] (GB:P47999;GB:O22828;GB:Q42568); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.3); similar to chloroplast cysteine synthase GCS2 [Allium sativum] (GB:AAX07221.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) -0.321345033171075 -3.17362259844676 0.00897497191637191 1 2.89693999202101 21.2284376533386 -0.321345033171075 0.100141115318997
AT3G07430_at 8.3203253491614 8.43811299443317 7.53471308227313 7.72618287336846 6.5649370329599 7.73213745490909 8.0217308188333 8.75994098745048 7.2021952117579 7.4087379899681 6.65969906354664 7.54518892972964 7.38520992206685 6.94708740527563 8.03485206855402 7.03888742466013 6.85347500979449 6.66924570812962 7.0202020079452 0.223991276159091 0.219830679897882 0.225879654045372 0.218108759043071 0.214771517120365 0.231350221025710 0.215343277410391 0.224632607179887 0.227559584051111 0.217940579603164 0.215023415000762 0.213892757971051 0.217725172786869 0.222090855490242 0.217520362467171 0.215470688494570 0.228599391414604 0.230068549210866 0.219456986578103 3 3 + 2379407 2379926 2379662 2379199 2380204 + gene protein_coding_gene FALSE TRUE AT3G07430.1 EMB1990 (EMBRYO DEFECTIVE 1990) similar to YGGT family protein [Arabidopsis thaliana] (TAIR:AT4G27990.1); similar to Os07g0185300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059065.1); similar to ycf19 (ISS) [Ostreococcus tauri] (GB:CAL52377.1); contains InterPro domain Protein of unknown function YGGT; (InterPro:IPR003425) -0.532103819173025 -3.17312161863530 0.00898294214689496 1 2.89615628646171 15.0633021215203 -0.532103819173025 0.242143344984469
AT1G20200_at 9.1773594492318 9.19073816945136 9.54363215214342 9.63190722907496 9.36865600672669 9.22878846376464 9.28015822237781 9.15793579349398 8.223159084019 8.46950026202474 8.76181481714196 8.67131238012286 8.86487100099448 8.46691062977395 8.8584453115363 8.8062666077819 8.6175578685458 8.53793344003378 8.5303128435198 0.113882048541147 0.113574079389804 0.117692300574968 0.115190019201838 0.113574079389804 0.114810704555248 0.115966689311709 0.117236618600240 0.133952953091506 0.117202908159928 0.113805282357062 0.116012643562311 0.116939061704799 0.129743957852881 0.113574079389804 0.114098363308808 0.122073768598145 0.129740420075226 0.115881197477321 1 1 - 7001496 7002310 7001765.091 7001192 7004409 - gene protein_coding_gene FALSE TRUE AT1G20200.1 EMB2719 (EMBRYO DEFECTIVE 2719); binding Identical to Probable 26S proteasome non-ATPase regulatory subunit 3a (26S proteasome subunit S3-a) [Arabidopsis Thaliana] (GB:Q9LNU4;GB:Q8L852); similar to 26S proteasome regulatory subunit S3, putative (RPN3) [Arabidopsis thaliana] (TAIR:AT1G75990.1); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:P93768); similar to nuclear antigen 21D7 - carrot (GB:JQ2257); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:Q06364); contains InterPro domain 26S proteasome regulatory subunit, C-terminal; (InterPro:IPR013586); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.266089832379445 3.17275763434703 0.00898873738504983 1 2.89558688250385 17.8752951375394 0.266089832379445 0.0356646857598005
AT2G40810_at 5.91220817228917 6.309924859121 6.49153849228896 6.42429036452684 6.61156372944116 6.79152573165173 5.92247898846636 6.03063238380048 5.37441726131416 5.56799093965791 5.78802163010723 5.40878587603643 5.67638945944339 5.6980608941517 5.15543763027573 5.74379776547957 5.85795292749904 5.40321214191133 5.64968311729125 0.218782429674238 0.219749262103506 0.218782429674238 0.221221710853836 0.221331583420321 0.232820656928593 0.218782429674238 0.227179619089031 0.224179599669662 0.221971527859747 0.218782429674238 0.224997723472138 0.218782429674238 0.232503641902001 0.219812548686942 0.227901471137787 0.226066858550181 0.224631320297826 0.220320495592841 2 2|0 +|/ 17040371 17041392 17040870.3 17039542 17041678 + gene protein_coding_gene FALSE TRUE AT2G40810.1|AT2G40810.2 AtATG18c (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) c) similar to AtATG18d (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) d) [Arabidopsis thaliana] (TAIR:AT3G56440.1); similar to P0028E10.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB39916.1); similar to Os01g0168500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042130.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.298339331541601 3.17263631647824 0.00899066981186665 1 2.89539709592484 11.8728475385486 0.298339331541601 0.0786940948651241
AT4G18430_at 2.36066622768966 2.62205356547771 3.01235013928441 3.17408660293872 1.94560781770043 1.67048565265581 1.62257912058914 1.51715205221600 1.83794803345053 1.04892141442818 1.80101812488582 1.38579992347597 1.38042197263001 1.81103495248279 1.93330056481468 1.55111913857681 1.52657220011085 2.04354669618757 1.64954611501777 0.231971312877671 0.250638909245957 0.260864174634493 0.246505371520425 0.23297349386292 0.244478496807054 0.231971312877671 0.238711297616993 0.238911596326116 0.244311930087083 0.231971312877671 0.234394114600819 0.233716600596506 0.237313051366345 0.233875848023941 0.234207020353662 0.239288557933536 0.235182371452018 0.231971312877671 4 4 - 10183922 10185125 10184376.545 10183728 10185291 - gene protein_coding_gene FALSE TRUE AT4G18430.1 AtRABA1e (Arabidopsis Rab GTPase homolog A1e); GTP binding similar to AtRABA1f (Arabidopsis Rab GTPase homolog A1f), GTP binding [Arabidopsis thaliana] (TAIR:AT5G60860.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02112.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.293491493665894 3.17182857553566 0.00900354677523221 1 2.89413347058247 3.83624275612451 0.293491493665894 0.0736833139444478
AT4G16980_at 10.5846332674279 11.0403085116868 10.3089341181241 10.5537582719579 10.1547528031304 10.4452412505672 11.2476909183663 11.8536339767815 12.4484813704921 12.0253625218529 12.6734518362685 12.4295144628316 12.5307039707212 12.3401964039311 12.345723291964 11.9064500402911 11.2058558673107 12.4306365321904 12.0671539539361 0.127294405816547 0.112928703333531 0.125457299305083 0.119595756660936 0.118209536247143 0.126266521988414 0.119726954897317 0.114137390831961 0.118171466763444 0.112763125831066 0.112507568247532 0.112202223510709 0.115918821813381 0.117988653264354 0.116028209252178 0.111856235150505 0.116325205765426 0.114798553162714 0.111908441329910 4 4 + 9557133 9557568 9557341 9556997 9557831 + gene protein_coding_gene FALSE TRUE AT4G16980.1 arabinogalactan-protein family similar to AGP19/ATAGP19 (ARABINOGALACTAN-PROTEIN 19) [Arabidopsis thaliana] (TAIR:AT1G68725.1); similar to hypothetical protein [Capsella rubella] (GB:CAC82613.1); contains InterPro domain Glutelin; (InterPro:IPR000480) -0.381705561179581 -3.17174343544948 0.00900490516472961 1 2.89400027629492 22.9801937228130 -0.381705561179581 0.146752938736430
AT2G20900_at 5.59482569963799 5.83564731718118 6.09254724181579 5.7724758190152 6.00170896755164 5.62718510931174 5.27999572413147 5.25853218503193 5.53275120073178 5.29004254511956 6.13651530685736 5.78629171762543 5.56378297801999 5.79136454603272 5.16768706277256 5.98730275231178 4.62564019452706 5.62786239071085 5.18756655195451 0.233097691981199 0.228693834531107 0.233320578914124 0.240375964931254 0.230108912813863 0.235568120765677 0.230016980731560 0.230220408485046 0.247770575635189 0.228939918453806 0.235523099443114 0.229682059318458 0.231375943634836 0.234187795011173 0.240083982154105 0.229679321719644 0.261998576956041 0.232162437830378 0.231335550802316 2 2|0 -|/ 8996907 8997822 8997284.444 8996356 9000120 - gene protein_coding_gene FALSE TRUE AT2G20900.1|AT2G20900.2|AT2G20900.3|AT2G20900.4 diacylglycerol kinase, putative|diacylglycerol kinase similar to diacylglycerol kinase accessory domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G28130.1); similar to calmodulin-binding diacylglycerol kinase [Lycopersicon esculentum] (GB:AAG23128.1); similar to diacylglycerol kinase variant A [Lycopersicon esculentum] (GB:AAG23130.1); similar to diacylglycerol kinase variant B [Lycopersicon esculentum] (GB:AAG23131.1); contains InterPro domain Diacylglycerol kinase accessory region; (InterPro:IPR000756); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206)|similar to diacylglycerol kinase accessory domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G28130.1); similar to diacylglycerol kinase variant A [Lycopersicon esculentum] (GB:AAG23130.1); similar to diacylglycerol kinase variant B [Lycopersicon esculentum] (GB:AAG23131.1); similar to diacylglycerol kinase [Lycopersicon esculentum] (GB:AAG23129.1); contains InterPro domain Diacylglycerol kinase accessory region; (InterPro:IPR000756); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) 0.315124077799940 3.17004612917659 0.00903202875152614 1 2.89134492344661 11.1441610752309 0.315124077799940 0.094970528149415
AT1G54730_at 5.68567567062593 6.01299519987835 5.87783132808248 6.40872005379834 8.25532322033452 6.80939255793952 6.50017122408224 6.20941357858511 5.64547788896569 6.35952322158785 6.45607174320391 6.67648057473755 6.87413680349282 7.14681663194416 6.12744423494681 7.079007275533 6.58104192385287 6.43537996652221 6.67048768773533 0.232442759306029 0.228725919112953 0.250967410137900 0.227159566570113 0.237879335595819 0.229140699106122 0.234515695909544 0.229416072367194 0.244200906030506 0.22436377507667 0.224938069663623 0.233864287804034 0.227390291836591 0.231998235060692 0.232289442701991 0.229132543019939 0.255878184641942 0.236932519918447 0.232792976175685 1 1|0 +|/ 20430677 20433006 20431874.125 20428077 20433790 + gene protein_coding_gene FALSE TRUE AT1G54730.1|AT1G54730.2|AT1G54730.3 sugar transporter, putative Identical to Sugar transporter ERD6-like 5 [Arabidopsis Thaliana] (GB:Q3ECP7;GB:Q8H197;GB:Q940K3;GB:Q9ZVM0); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT5G18840.1); similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114)|Identical to Sugar transporter ERD6-like 5 [Arabidopsis Thaliana] (GB:Q3ECP7;GB:Q8H197;GB:Q940K3;GB:Q9ZVM0); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT5G18840.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|Identical to Sugar transporter ERD6-like 5 [Arabidopsis Thaliana] (GB:Q3ECP7;GB:Q8H197;GB:Q940K3;GB:Q9ZVM0); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT2G48020.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.59131866663101 3.16997891025107 0.00903310464134577 1 2.89123976020482 12.9185455176869 0.59131866663101 0.277116470254763
AT4G36040_at 12.7796699818914 12.9236725495654 13.1995875998784 13.2563667993727 13.2843538752478 13.3749779728905 12.0295153475489 12.4364297443140 12.1463482057142 11.9176183947713 11.6369166254195 11.4771907064248 12.4513698895125 12.0848607686224 11.1067573302076 12.2579858611403 12.0386247259263 11.8721616817051 11.9643428084524 0.0776358272486939 0.0730358991326554 0.0784705142994735 0.0767965763406821 0.0739479723702067 0.080923485148123 0.0760428745499018 0.0750337833952572 0.077473846463397 0.0731502395001474 0.0766945953095067 0.0743423341821955 0.073095567376817 0.076731118963014 0.0748784577262482 0.0730358991326554 0.0791438102005587 0.0752088569407897 0.0754590231796179 4 4 - 17049770 17050054 17049916.636 17049174 17050277 - gene protein_coding_gene FALSE TRUE AT4G36040.1 DNAJ heat shock N-terminal domain-containing protein (J11) Identical to Chaperone protein dnaJ 11, chloroplast precursor (AtJ11) (AtDjC11) (ATJ11) [Arabidopsis Thaliana] (GB:Q9FYB5;GB:O65641); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT2G17880.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.296398317495643 3.16986715064120 0.00903489372663924 1 2.89106491314811 24.8481566929715 0.296398317495643 0.0769563544650843
AT3G21865_at 8.47304132004123 8.6845994708161 8.41128723870568 8.49167744944356 8.97898368615101 8.83947126205769 8.26682501718688 8.3388618440443 7.55701066242499 8.44988385241763 8.57383304840796 8.86039714403659 8.88318473976904 8.33464400063927 8.4556869495856 8.47831580503522 8.35582056164712 8.38148978951444 8.69679682679099 0.131148439107193 0.135491716524063 0.138147976603147 0.131436633863031 0.134828707599823 0.135037512223020 0.133297003468251 0.134542968473491 0.156794720293464 0.136118442360964 0.139693117796502 0.133194009841922 0.131683151556167 0.139555287182921 0.141886550903247 0.140765587353273 0.146761534393818 0.140904369102575 0.134523800136788 3 0|3 /|- 7701336 7701762 7701472.125 7701032 7703392 - gene protein_coding_gene FALSE TRUE AT3G21865.1 PEX22 (PEROXIN 22); protein binding Interacts with PEX4 in a yeast two-hybrid. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. similar to H0323C08.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86212.1); similar to Os04g0629000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053964.1); similar to Os04g0672800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054228.1) 0.272690360176114 3.16966459852944 0.00903813716585617 1 2.89074802057070 16.9480860537428 0.272690360176114 0.0476678303547831
AT1G53120_at 6.60247778949333 6.81648046976342 6.57434831496365 6.26281093731968 6.36184345411086 6.78654096768473 7.5647836654241 7.30918627316455 6.70837417897512 6.69038107014674 6.82679645528662 6.74683174591655 6.6726439211595 6.55384024830626 6.6641948717327 6.74386000309707 6.59269211234639 6.30182316459507 6.76385166223746 0.233033574536757 0.224171520482382 0.223127102779107 0.228594678139713 0.227206419139669 0.22915790886351 0.227108054647101 0.223733158034908 0.235412576489336 0.22227239869288 0.22459247686303 0.22227239869288 0.2234164488192 0.22227239869288 0.240407405898552 0.225892497033357 0.242066791190115 0.242590914059237 0.22227239869288 1 0|1 /|+ 19797216 19798091 19797634.333 19796425 19798430 + gene protein_coding_gene FALSE TRUE AT1G53120.1 RNA-binding S4 domain-containing protein similar to S4 domain protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD86964.1); similar to Os01g0747700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044235.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) -0.329939893044856 -3.16844472444755 0.00905769586149524 1 2.88883949222 13.4641611268696 -0.329939893044856 0.107871607380438
AT2G26970_at 7.47730257098856 7.69666437962948 8.00588600338073 7.66106207050363 7.8212745733669 7.82634122143457 7.26150051126224 7.30202397387573 7.36063434650136 6.76052595629311 5.96174862260755 5.90617794827443 6.14715533265181 6.22796779962309 5.74761929738452 6.37382715184786 5.64395087421084 6.51444010791903 7.00174395606822 0.227419035723720 0.2174848517841 0.230052778190778 0.219719866484283 0.223140620762783 0.220749664267512 0.225969358740913 0.219927872610153 0.239417287029452 0.219347081456781 0.219253715153897 0.219679728298453 0.221870209955356 0.222421400985053 0.228038708209531 0.221625043142921 0.228565670891694 0.224245190724242 0.217507109750800 2 0|2 /|- 11517202 11517699 11517367.75 11516799 11518992 - gene protein_coding_gene FALSE TRUE AT2G26970.1|AT2G26970.2 exonuclease family protein|exonuclease Identical to Oligoribonuclease (EC 3.1.-.-) [Arabidopsis Thaliana] (GB:Q9ZVE0;GB:Q8VZL2); similar to small fragment nuclease [Danio rerio] (GB:NP_957038.1); similar to PREDICTED: similar to Oligoribonuclease, mitochondrial precursor (Small fragment nuclease) (RNA exonuclease 2 homolog) [Tribolium castaneum] (GB:XP_971552.1); similar to OSJNBa0079M09.9 [Oryza sativa (japonica cultivar-group)] (GB:CAD40497.2); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520)|Identical to Oligoribonuclease (EC 3.1.-.-) [Arabidopsis Thaliana] (GB:Q9ZVE0;GB:Q8VZL2); similar to small fragment nuclease [Danio rerio] (GB:NP_957038.1); similar to PREDICTED: similar to Oligoribonuclease, mitochondrial precursor (Small fragment nuclease) (RNA exonuclease 2 homolog) [Tribolium castaneum] (GB:XP_971552.1); similar to OSJNBa0079M09.9 [Oryza sativa (japonica cultivar-group)] (GB:CAD40497.2); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) -0.290669543120107 -3.16708761363692 0.00907950543421794 1 2.88671617962617 14.1846714021065 -0.290669543120107 0.0710770223320437
AT2G33540_at 4.3180154459089 4.33473553279688 4.540596282351 4.32607729161153 5.49354066884651 4.77786500681151 4.78535179190135 4.49490417576362 4.14890592151195 4.09985907002656 4.56734789787508 4.61175803995064 4.39906865050729 4.67167267424328 4.27839124755494 5.07925430568908 4.48702741032024 3.97788800680636 3.96266589039281 0.223022970390376 0.223789618232241 0.226060554112957 0.226524888205516 0.222926707827099 0.237355470681978 0.225449279122746 0.233855702151916 0.243188474129003 0.235760204203752 0.222926707827099 0.222926707827099 0.235585470783082 0.222926707827099 0.222926707827099 0.222926707827099 0.225396444420220 0.239377581959757 0.226140633156810 2 2|0 -|/ 14212010 14212590 14212308.556 14210581 14215873 - gene protein_coding_gene FALSE TRUE AT2G33540.1 CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3); CTD phosphatase similar to phosphoprotein phosphatase [Arabidopsis thaliana] (TAIR:AT5G58003.1); similar to NLI interacting factor-like phosphatase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93957.1); similar to putative transcription regulator CPL1 [Lycopersicon esculentum] (GB:AAV92930.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain FCP1-like phosphatase, phosphatase domain; (InterPro:IPR011947); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) 0.369921072143522 3.16700902872664 0.00908076997221887 1 2.88659322464705 8.92364976937998 0.369921072143522 0.138751580705068
AT1G69920_at 1.12324301881589 0.821539192318911 2.55060213386851 2.24229259534717 1.09460359237229 1.04447416746472 1.29376717857744 0.925107169315565 1.22651740794698 1.09145364817754 1.12568793279287 1.26167419186090 1.02080182575544 1.27820495459517 1.19262710012351 0.954318778455117 1.13209254178310 1.94414666394531 1.56134705618152 0.211052741717260 0.210786501289468 0.214874054562707 0.211626977151635 0.208122900411568 0.207808045640284 0.207406247803127 0.209481606002830 0.216913066545105 0.214487851295264 0.2115926851082 0.210935288967455 0.214833427718650 0.210648743821635 0.207177204589266 0.207418203400154 0.208612525577715 0.213067668094426 0.208927753662438 1 1 - 26338083 26338959 26338448.636 26337913 26339221 - gene protein_coding_gene FALSE TRUE AT1G69920.1 ATGSTU12 (Arabidopsis thaliana Glutathione S-transferase (class tau) 12); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU13 (GLUTATHIONE S-TRANSFERASE 12), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G27130.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.318833596867400 3.1664694310293 0.00908945766338869 1 2.88574895607229 2.6528537740597 0.318833596867400 0.0985808944943284
AT3G26100_at 8.36052482691081 8.22140598386127 8.87893063184615 8.9417950104128 9.14841170258167 8.91511652330061 8.17553129027911 8.28358984834132 8.34000726573296 8.38863362350401 8.30101215513065 8.08945621058659 8.29945760423006 8.60477591419076 7.19517704629296 8.4258586121926 8.29622803744628 8.32938699391696 8.33121129436202 0.110916043770180 0.105415047460776 0.107174257695579 0.110653273622791 0.109131643828429 0.105544038207826 0.110504154731751 0.107282968478994 0.113744177591573 0.107608209888647 0.109016663447519 0.105415047460776 0.106596568418293 0.110899901518998 0.114639089790082 0.108548914570907 0.125072919557610 0.108788122194179 0.114624374856431 3 3 + 9540727 9541300 9541020.455 9538160 9541690 + gene protein_coding_gene FALSE TRUE AT3G26100.1|AT3G26100.2 regulator of chromosome condensation (RCC1) family protein similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G15430.2); similar to Os12g0284000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066582.1); similar to regulator of chromosome condensation, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97468.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) 0.275092745117937 3.16587519720271 0.0090990347780618 1 2.88481918836552 16.8886397936657 0.275092745117937 0.0517457391852057
AT1G29070_at 11.0919931264494 11.2431545210118 10.4510011426157 10.3165378816318 11.1046913453963 10.7985847372937 11.4448823667755 11.4170672868032 11.6031382743742 11.6111703156440 11.9330206111066 12.1705146361271 11.4344044969765 11.5177915928807 12.1138915146591 11.6874820009484 11.0167586756393 11.4454501555274 11.5907274266289 0.0895031011260711 0.0859665156731007 0.0856903833187616 0.092965566894727 0.087223150182554 0.0892118695430741 0.0884772049492687 0.0864952404853635 0.092678562137621 0.0892590467621197 0.0873503108480495 0.0864699551821306 0.0856903833187616 0.0895179098175387 0.0885720719093318 0.0856903833187616 0.0949524948916513 0.0889094688252104 0.0890080866485912 1 1|0 +|/ 10149879 10151115 10150371.4 10149777 10151346 + gene protein_coding_gene FALSE TRUE AT1G29070.1 ribosomal protein L34 family protein Identical to 50S ribosomal protein L34, chloroplast precursor (CL34) (RPL34) [Arabidopsis Thaliana] (GB:Q9LP37); similar to 50S ribosomal protein L34, chloroplast precursor (CL34) (GB:P82244); contains InterPro domain Ribosomal protein L34; (InterPro:IPR000271) -0.284167505129077 -3.16587306000284 0.00909906924125048 1 2.88481584437015 22.6167854923466 -0.284167505129077 0.063679665132285
AT1G27595_at 5.74083547802789 5.94242114173136 5.01602116052522 5.12497176734001 5.76319308448268 5.60483202545072 5.29657723567673 5.79468448645136 4.85079559173907 4.60605523700801 4.49119432263019 4.85337977906098 4.50858216102802 4.53108834229304 3.97350370340991 4.68981015857918 5.20328028485733 4.12155771764017 5.14706230545252 0.238474041528295 0.237700919939834 0.239324242699318 0.241945345650027 0.244986759793866 0.239535650612792 0.243041417378809 0.246513354439985 0.258462747226986 0.238144067250138 0.238618233191666 0.24068058212736 0.238805919913905 0.23601708224947 0.251489090508834 0.236238303805043 0.245117205629708 0.240633546802657 0.238280947319209 1 1|0 +|/ 9600940 9602869 9602210.889 9596347 9603242 + gene protein_coding_gene FALSE TRUE AT1G27595.1 similar to ESP4 (ENHANCED SILENCING PHENOTYPE 4), binding [Arabidopsis thaliana] (TAIR:AT5G01400.1); similar to Os07g0693900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060734.1); similar to symplekin [Xenopus tropicalis] (GB:NP_989259.1); contains domain ARM repeat (SSF48371); contains domain gb def: T22C5.3 (PTHR15245:SF6); contains domain FAMILY NOT NAMED (PTHR15245) -0.318898281034014 -3.16506253551102 0.00911214882824549 1 2.88354763385832 10.2427023491710 -0.318898281034014 0.0987619301538586
AT1G54740_at 3.80968288249612 3.80803772208132 3.92689979568929 3.98989194540757 5.89922839883482 5.08359249118068 4.38405515347321 4.20447665986343 4.88181691921772 4.8699453530895 6.29361985251937 5.38461314991601 5.76800115306539 6.02084064632973 4.65871095563018 4.4450741717676 3.79287105900528 5.18895796055753 5.58112971788739 0.235738430043166 0.225617230254502 0.231065987173696 0.225995747338316 0.216664080530575 0.232244419966240 0.220295531554914 0.215547204796812 0.240727567839776 0.220111222103582 0.215547204796812 0.219814343717944 0.224639266499088 0.232247709079877 0.223165923485434 0.215547204796812 0.241275160453581 0.220512093188102 0.224832601609225 1 1 + 20434815 20435376 20435071.818 20434436 20435653 + gene protein_coding_gene FALSE TRUE AT1G54740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22110.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28434.1) 0.378231087583462 3.16416809084578 0.00912660480871616 1 2.88214808367642 9.54075818879352 0.378231087583462 0.144941012580153
AT3G61450_at 1.42004420236745 1.54486616521884 1.78380634897570 1.81901121873052 1.50770979093561 1.46584157266677 1.33102225669122 1.06421525068603 1.64396389269374 1.36468958502205 1.46039474176967 1.71666344521528 1.43774881063853 1.88308850672029 1.95188663060117 1.44199911557979 2.11352191639251 1.92197831105086 1.47665529556708 0.183405523311705 0.182425516014808 0.187386280579552 0.182425516014808 0.190860026157915 0.190138749192084 0.188938919299161 0.186247296335157 0.189650755639983 0.189644448519280 0.183533374380507 0.18486440620079 0.187322058031509 0.184893502433108 0.186014667325062 0.182425516014808 0.190630720035603 0.188209040560466 0.184069545818897 3 3|0 +|/ 22749968 22750790 22750385.875 22749369 22750959 + gene protein_coding_gene FALSE TRUE AT3G61450.1 SYP73 (SYNTAXIN OF PLANTS 73) syntaxin of plants 73 (SYP73) Identical to Syntaxin-73 (AtSYP73) (SYP73) [Arabidopsis Thaliana] (GB:Q94KK5;GB:Q9M321); similar to SYP71 (SYNTAXIN OF PLANTS 71) [Arabidopsis thaliana] (TAIR:AT3G09740.1); similar to putative syntaxin 71 (SYP71) [Oryza sativa (japonica cultivar-group)] (GB:AAT58726.1); similar to Os05g0553700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056264.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85201.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.274931262202329 3.16321077587473 0.0091421026945382 1 2.88065012290414 3.11007115537084 0.274931262202329 0.0518467935694514
AT3G26060_at 10.0753854319824 10.1584839668994 9.2409839866131 9.210713303403 9.96977255601544 9.677756535031 10.8190190843507 10.6668544812457 10.7089957664717 10.8441554115843 11.0869061353145 11.3542353938948 10.5921092355954 10.9694827539841 11.5868021573503 10.9278895324936 10.4558142104709 11.0876178710784 10.4351495721154 0.114841901930556 0.112144411829443 0.121522050867234 0.117365840456149 0.114890993276447 0.119133873761768 0.115906647038867 0.115158171676157 0.117736569418540 0.114082310324773 0.111664914964401 0.115503522212285 0.114837067147483 0.117523281894439 0.116248678544466 0.111009032258267 0.117681072445108 0.113308247894132 0.115827708382816 3 3|0 +|/ 9526099 9527295 9526793.4 9525970 9527611 + gene protein_coding_gene FALSE TRUE AT3G26060.1 peroxiredoxin Q, putative encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to peroxiredoxin Q [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAS46230.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) -0.280144450652491 -3.16272009617595 0.00915005661814316 1 2.87988231613842 20.8125582071909 -0.280144450652491 0.0590035462552244
AT1G20816_at 5.55706207955672 6.15423898099707 5.45831375380454 5.60665400249263 5.66841965178615 5.75896444714059 6.92806750635349 6.66267537251218 6.10028757474374 6.5365381933983 6.73803387497371 6.9433714217108 5.92006222861751 6.49131542819062 6.83791564890036 6.91922387883404 5.67701314977791 6.00825807370506 6.62532625936278 0.312804842836072 0.284997071183407 0.299243779753150 0.290941286327721 0.294800736714621 0.314754930025460 0.284997071183407 0.306830955424675 0.32340255153691 0.296422698684771 0.289026404144289 0.284997071183407 0.290179375964536 0.284997071183407 0.289576980048358 0.316817688273219 0.313414029391789 0.333003916874090 0.285853845699136 1 1|0 +|/ 7233820 7234715 7234408 7233757 7235117 + gene protein_coding_gene FALSE TRUE AT1G20816.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76405.2); similar to chloroplast channel forming outer membrane protein [Pisum sativum] (GB:CAB58442.1); contains domain Clavaminate synthase-like (SSF51197) -0.340620575230871 -3.16257074968606 0.00915247892077417 1 2.87964861947882 12.4056077521256 -0.340620575230871 0.117020841439140
AT1G49820_at 8.42272445493948 8.54343842510208 8.67496592857034 8.64037855074415 8.95927762328741 8.622021037616 8.34919837770653 8.36878967835121 7.42525057638331 7.50217650176261 7.7595886148824 7.37920468299199 7.45672047784331 7.9087764205684 7.42648662704589 7.7365568271914 7.67942781258572 7.82299626971712 7.22414331139152 0.176931389033134 0.174411539452175 0.172286864330402 0.172879148468117 0.181521489060491 0.175349741965126 0.182836967567463 0.180042237667295 0.182912597691317 0.172503217854360 0.169153482989136 0.180597742259762 0.174443314600931 0.174514348214241 0.173103903706892 0.175192279514362 0.181714249464811 0.179192868097521 0.169883544657500 1 1 + 18447831 18448479 18448071.909 18446558 18448766 + gene protein_coding_gene FALSE TRUE AT1G49820.1 ATMTK; S-methyl-5-thioribose kinase encodes 5-methylthioribose kinase, involved in methionine cycle similar to H0818H01.10 [Oryza sativa (indica cultivar-group)] (GB:CAJ86088.1); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575); contains InterPro domain 5-methylthioribose kinase; (InterPro:IPR009212) 0.282742985560226 3.16193077292421 0.0091628663004941 1 2.87864717662780 16.0876375160975 0.282742985560226 0.0623702964320316
AT1G67560_at 8.1475273579672 8.42964522390354 7.16524245160544 7.47920059199173 7.76737496323946 7.30804683985002 7.10065718019783 7.65213470546006 7.51900470071583 7.50599057063974 7.34466085878506 7.61515228704741 7.37662146797172 7.26645279097674 6.45328650642829 7.52193683999933 7.17306018840191 7.44757391420645 7.85235034287984 0.224273915845508 0.227353652662475 0.237377820748552 0.225430755887527 0.218148540930138 0.23858561179623 0.234650530159627 0.222406721847048 0.233361898292741 0.226621608017702 0.217364486311234 0.227152990201362 0.230611735225856 0.231888323114288 0.242353608111770 0.217364486311234 0.231877565366512 0.217364486311234 0.228650600563398 1 1 + 25327240 25327756 25327515.273 25323562 25327927 + gene protein_coding_gene FALSE TRUE AT1G67560.1 lipoxygenase family protein similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT3G45140.1); similar to lipoxygenase [Zantedeschia aethiopica] (GB:AAG18376.1); similar to lipoxygenase [Nicotiana attenuata] (GB:AAP83138.1); similar to lipoxygenase [Sesbania rostrata] (GB:CAC43237.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.376731834947592 -3.16164261123940 0.00916754732218578 1 2.87819625251300 15.0815411533464 -0.376731834947592 0.144090221347786
AT1G03770_at 2.30811193031747 1.94122241497217 2.52238861658955 2.56286456720506 3.03326050516063 2.87411323465783 2.74194519464363 2.08393814630484 2.65250927106235 2.17271659793479 2.75386904766729 2.13466251770651 3.23783766405223 2.76434627041824 2.78572593323688 2.22377515539766 2.7876440695543 2.80678804499051 2.50155230075754 0.1761821354016 0.177002301814248 0.177684240043032 0.186996487948735 0.178661048364778 0.189137702868100 0.184196233201331 0.177019487926967 0.176409699389540 0.174275180193849 0.184704270968631 0.176516815333238 0.177866979191378 0.178636129867647 0.181391551381264 0.177193087538713 0.174392831441034 0.186695395999987 0.181975693796934 1 1 + 946508 947226 946678.6 944594 947481 + gene protein_coding_gene FALSE TRUE AT1G03770.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G44280.1); similar to Os01g0796700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044517.1); similar to putative ring finger protein 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD53026.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.361962003651734 3.16108470095931 0.00917661715672604 1 2.87732320802318 5.07302581512949 0.361962003651734 0.133437080471983
AT1G34020_at 6.19205187153774 5.99065495010904 5.9662225477902 6.04537117918964 5.54798084242815 6.69435471637188 6.19235391670925 6.01443978728737 5.34002845506958 5.29769621059473 6.38521763199695 6.370268727866 5.97850121118378 6.60216453876964 6.3568856232616 6.04407628580735 6.27237623965615 5.7080029829207 5.0984294141658 0.177819828434053 0.172245260892318 0.175989414102964 0.171641118381964 0.182258451405771 0.171641118381964 0.175423871284338 0.174157487864358 0.198937444092282 0.174804354933283 0.171641118381964 0.177995084124508 0.171641118381964 0.176799020594203 0.180109366050046 0.17328886883736 0.187605452199044 0.191779290466922 0.172524718056354 1 1|0 +|/ 12367969 12368897 12368457.4 12366834 12369158 + gene protein_coding_gene FALSE TRUE AT1G34020.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT4G09810.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE81202.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.467704575970094 3.16060119225197 0.00918448482762465 1 2.87656658040488 11.8104644006576 0.467704575970094 0.204222960804610
AT4G05520_at 3.23225004933683 3.07537350220315 2.95659933953650 2.90201246281978 3.75837601885028 3.42555232435084 3.64898830982582 2.98842776585655 2.48148546834815 2.40234878749424 3.24192411254668 3.79504636957862 3.09980389543112 3.15734290619307 3.93181659765503 3.23073293970037 3.14739239068533 3.30460292409859 3.12753632948491 0.199160769808773 0.196131206096144 0.202099180731800 0.198598524851230 0.216257784667623 0.207693767902662 0.203196751367447 0.195876797126305 0.206842037488951 0.199794705404461 0.198936205996692 0.203307593548573 0.204067521471967 0.195876797126305 0.205316959104477 0.198962461872303 0.203361269665849 0.205813271107529 0.204489287322880 4 4|0 +|/ 2806536 2807305 2806857 2804448 2807926 + gene protein_coding_gene FALSE TRUE AT4G05520.1|AT4G05520.2 calcium-binding EF hand family protein similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G20290.2); similar to EPS15 homology (EH); Actin-binding, actinin-type [Medicago truncatula] (GB:ABE85290.1); similar to Os02g0158100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045954.1); similar to EPS15 homology (EH); Dynamin; Actin-binding, actinin-type [Medicago truncatula] (GB:ABE87310.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Dynamin; (InterPro:IPR001401); contains InterPro domain EPS15 homology (EH); (InterPro:IPR000261)|similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G20290.2); similar to EPS15 homology (EH); Actin-binding, actinin-type [Medicago truncatula] (GB:ABE85290.1); similar to Os02g0158100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045954.1); similar to EPS15 homology (EH); Dynamin; Actin-binding, actinin-type [Medicago truncatula] (GB:ABE87310.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Dynamin; (InterPro:IPR001401); contains InterPro domain EPS15 homology (EH); (InterPro:IPR000261) 0.358750517397048 3.15947240549373 0.00920287914949924 1 2.87480014049651 6.2654672859784 0.358750517397048 0.131191166905480
AT3G04260_at 8.46156936753466 8.13974634362529 7.74834986508353 7.69125769677258 8.4640640066913 8.18092024782062 8.26876968451593 7.91528129323626 7.64065842924304 8.05870881361652 7.40082880454891 7.72637962034652 7.46587372394252 7.21617790755413 7.82338470534833 7.61275112522512 7.71733704901766 7.29071720465788 8.26579281336644 0.140301328097763 0.138171361175550 0.135008129749898 0.132804359790396 0.135327441076048 0.134296715713737 0.145213547218478 0.134913593445073 0.150166890661629 0.138126697415482 0.137801158746490 0.137069922162602 0.139569509432897 0.142045036056288 0.143763384529678 0.135237666976827 0.139580835305554 0.151951524123431 0.134082671122966 3 3|0 -|/ 1123256 1124090 1123496.111 1123030 1127522 - gene protein_coding_gene FALSE TRUE AT3G04260.1 PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G31400.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93724.1); similar to putative DNA binding domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05531.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.31594956798228 -3.15942695496324 0.00920362057843725 1 2.87472901382116 15.8687787896544 -0.31594956798228 0.0966559494096446
AT1G73850_at 1.15949296013462 1.04167879391808 1.41071510902869 1.28364543418417 1.59470897692258 1.41600032249377 1.42137607423931 1.18104412377959 1.62149176621762 1.29931439197935 1.65498885777863 1.64840900093223 1.83078086369475 1.75680289103085 2.02933033345599 1.49153110944240 1.45197118941222 1.81834233568838 1.20345654879908 0.169253009394272 0.170286368695866 0.174062678241492 0.166309310251491 0.173483527861791 0.170563766736021 0.169895137388589 0.173116923984796 0.168589264835396 0.172474390324777 0.169334118388735 0.168476304457887 0.171748128506713 0.179268803186361 0.167499740499332 0.174889876411246 0.172320332403922 0.183503608067863 0.167593115263538 1 1 + 27773168 27773804 27773398 27771557 27774118 + gene protein_coding_gene FALSE TRUE AT1G73850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20260.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32213.1); similar to Os08g0519600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062260.1); similar to Os01g0129500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041917.1); contains InterPro domain Protein of unknown function DUF1666; (InterPro:IPR012870) 0.280442404826742 3.15839525151132 0.00922046694948572 1 2.8731144528052 2.85609462850999 0.280442404826742 0.0598786916152327
AT3G61530_at 4.63012872253954 4.95470896707113 4.33703402198876 4.68521642032306 4.34260131795615 4.53892923062557 4.88653412745579 4.22224753655846 4.43607893379851 5.25058239628215 4.18635903586611 4.61980777535873 4.33462320060261 3.91145794654722 4.58070804345784 4.20363318655073 4.20069806214566 4.24089951794514 4.84444537876956 0.243907973598963 0.245312517840882 0.251036739150319 0.240817933086042 0.246512175475657 0.250072114930072 0.247460321675338 0.240817933086042 0.240817933086042 0.249769568009095 0.240817933086042 0.246346646241715 0.240950325058964 0.247442464120273 0.254761780835581 0.240817933086042 0.247311181871791 0.240817933086042 0.248964134694632 3 3|0 -|/ 22782758 22783638 22783285.375 22782439 22784765 - gene protein_coding_gene FALSE TRUE AT3G61530.1|AT3G61530.2 PANB2; 3-methyl-2-oxobutanoate hydroxymethyltransferase similar to KPHMT1/PANB1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1), 3-methyl-2-oxobutanoate hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT2G46110.1); similar to Os01g0225400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042460.1); similar to putative 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAB32713.1); contains InterPro domain Ketopantoate hydroxymethyltransferase; (InterPro:IPR003700) -0.378194240453501 -3.15787586135494 0.00922895975440731 1 2.87230161864009 9.13891283423614 -0.378194240453501 0.145448779112262
AT1G54080_at 9.67577369884104 9.53638267532044 9.78188451821025 9.5497004840821 9.73805371268509 9.67775861834498 9.73970145586044 9.7660254636538 9.4381366545496 9.39250407264554 9.93726590958558 9.92181506044835 10.1324309441731 9.94324246340369 9.87463388873204 9.93686057416378 10.0922779433775 9.69131580658562 9.38465455901135 0.0877119900676294 0.0883428044038827 0.0901381943967936 0.0956510430723393 0.08952086634915 0.0931417597228928 0.0873367011143548 0.090930452302058 0.101356665629832 0.08837129304689 0.087553918137901 0.0885217887946944 0.0938493863077722 0.0874539504344972 0.0883696871512363 0.0873367011143548 0.0907816424467217 0.101797828086671 0.088062434361608 1 1 - 20187608 20188297 20187959.818 20187249 20190694 - gene protein_coding_gene FALSE TRUE AT1G54080.1|AT1G54080.2 UBP1A; mRNA 3'-UTR binding similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to oligouridylate-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G14100.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to oligouridylate-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G14100.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.271755202492448 3.15458548303865 0.00928294714108569 1 2.86715199869835 19.3563244546469 0.271755202492448 0.0482284859120649
AT2G45720_at 6.37442857773387 6.68194690550205 6.42840792542925 6.5262095631486 7.64759819311139 6.98554788096092 6.43083160666402 6.38116564802576 4.6645862904 5.5728608370017 5.19043226766826 5.77632278923671 5.61931461983433 5.24359908095102 5.54022803768055 5.53136084341063 5.84651167425144 5.34266808994099 5.46536840600144 0.223202657032284 0.211980399883368 0.224089932283446 0.225493777854624 0.217443415900086 0.220991825147884 0.212453337594664 0.223695021957494 0.22878633158576 0.211980399883368 0.214559082162275 0.211980399883368 0.220122640537193 0.218704866753859 0.215547046732852 0.214928869155492 0.220115105602422 0.219506830744452 0.214275854025126 2 2 + 18842614 18843119 18842848.818 18840438 18843448 + gene protein_coding_gene FALSE TRUE AT2G45720.1|AT2G45720.2 armadillo/beta-catenin repeat family protein|binding similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G01830.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88271.1); similar to putative arm repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92297.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47908.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.353440268542572 3.15306891758196 0.00930793822451407 1 2.86477834738519 12.0548052974917 0.353440268542572 0.127745526090519
AT3G45630_at 5.96899559994587 5.92489052294703 6.51786062484808 6.0375106173031 6.89586553532289 6.55985578206072 6.62595770878178 5.8628893582864 5.48565413730531 5.25140373040401 5.18237098191867 5.78646359059359 6.01898948213873 5.76004609739511 5.67120394340265 5.93265853849061 5.72877000358725 5.74776271433136 5.21962657844343 0.215327286292638 0.217969355205072 0.212398804587938 0.224460788370717 0.211386532946698 0.207708276770730 0.212676158469378 0.208378727488217 0.212802434142447 0.212260994178741 0.20853360494641 0.216690972194285 0.208988027431631 0.208734262740923 0.215020002244892 0.213790296804489 0.235626585269633 0.208950201028537 0.212737651371321 3 3 - 16759754 16760304 16760002.182 16759159 16764818 - gene protein_coding_gene FALSE TRUE AT3G45630.1 RNA recognition motif (RRM)-containing protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G60170.1); similar to nucleic acid binding / nucleotide binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G28540.2); similar to RNA-binding re (GB:ABE87889.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.408364097995712 3.15238149309442 0.00931928858978042 1 2.86370239569419 11.8229422108702 0.408364097995712 0.166695505587321
AT1G18190_at 4.27905458109827 4.2964770531315 3.6041122805801 3.65007120069848 3.82404545936131 4.46738706480642 3.80852241109834 4.68040929799474 5.21761604680782 5.05951043640677 4.53687732127428 4.65408732886497 4.92339413274919 4.44414579028031 4.80322784358725 4.45945414490319 4.79864506382336 4.39602225964346 5.10708697329896 0.225036509127466 0.215428741444152 0.223579546489355 0.217695589832646 0.22124038391356 0.223788006509054 0.225658187539311 0.213544830528558 0.226608776971066 0.212672362698541 0.222095029897737 0.212672362698541 0.222529604266124 0.212672362698541 0.220978455480851 0.212672362698541 0.229695080123839 0.220356371233366 0.220543874256386 1 1|0 -|/ 6258095 6258564 6258237 6257844 6261450 - gene protein_coding_gene FALSE TRUE AT1G18190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19950.1); similar to Os04g0652500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054099.1); similar to hypothetical protein MtrDRAFT_AC139526g29v1 [Medicago truncatula] (GB:ABE80160.1); similar to OSIGBa0113E10.14 [Oryza sativa (indica cultivar-group)] (GB:CAJ86331.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.440400625499783 -3.15230136193975 0.00932061258393161 1 2.86357697380354 8.95378636250211 -0.440400625499783 0.187705759959591
AT4G13990_at 1.03211543677079 1.37584042162305 0.895159529644046 0.723632599173427 0.896380115687517 1.05881254476003 1.90977765488280 1.88739722858250 1.16712966190928 1.76986285286041 1.50248405788491 1.99890531180706 1.77413851322496 1.72492479242333 1.62888367291405 1.55041851758117 1.70887073489419 1.79149251176289 1.96143414829268 0.265841225123194 0.269027046354149 0.281108669008271 0.272343494261149 0.272436745286046 0.264041469572500 0.260916714076172 0.266134124586465 0.265776186582128 0.267146055336813 0.258664379731607 0.261713373713129 0.258213335908191 0.262877966831419 0.258213335908191 0.258213335908191 0.258213335908191 0.260631386228243 0.268258147922252 4 4 + 8085318 8085909 8085592.7 8084390 8086090 + gene protein_coding_gene FALSE TRUE AT4G13990.1 exostosin family protein similar to MUR3 (MURUS 3), catalytic [Arabidopsis thaliana] (TAIR:AT2G20370.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE92010.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.290290305887206 -3.15111125466145 0.00934029901937728 1 2.86171417937177 2.89380126726503 -0.290290305887206 0.0722808397581244
AT3G62360_at 8.36436356949644 8.47015892209644 8.0310950150065 8.0366872247594 7.88339289386466 7.19933721536934 7.94328082910079 7.62570865937058 7.8275600712829 7.12966271750216 6.92572583013074 7.58133643856798 7.1104381380248 7.26140029062559 7.51980388075346 6.97045740851874 6.76993513137111 6.90996843855027 7.64734548685457 0.180077963379121 0.180630637763237 0.196340641028312 0.182838787950433 0.180227916268465 0.198475085585194 0.182010453937057 0.183391679297794 0.201219261641367 0.183651770581479 0.187830163749231 0.184470394121507 0.181063709707928 0.188525853534458 0.184641639298818 0.187654941167522 0.189732955956824 0.190563681362738 0.186690299044482 3 3|0 -|/ 23084073 23084789 23084410 23083761 23091518 - gene protein_coding_gene FALSE TRUE AT3G62360.1 similar to LOC495699 protein [Xenopus laevis] (GB:AAH86296.1); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969); contains InterPro domain Cna B-type; (InterPro:IPR008454); contains InterPro domain Borrelia outer surface lipoprotein; (InterPro:IPR001809) -0.358486402539067 -3.15001808441597 0.00935841912535759 1 2.86000306539230 15.2772476843569 -0.358486402539067 0.131795435246245
AT3G62420_at 10.1917043310566 10.6291642532398 10.6128696385480 10.7902274340746 10.5914617960841 10.7837827742999 9.81739973140034 10.2528216183309 9.84137970134048 9.45570694764072 10.0781061284037 9.79255413359573 9.86235271960022 9.95971425095878 9.33521546119191 9.78761887642427 9.8388065584495 9.78273420781765 9.50504201538849 0.114331073836283 0.114215712551143 0.110569911533405 0.117178296476601 0.114311883030246 0.116418506477528 0.118582650840046 0.116757281209039 0.118610583202846 0.116329495772537 0.110569911533405 0.110569911533405 0.115574276567461 0.115515529680347 0.120674437176383 0.110742444488510 0.119281603611989 0.116409338080660 0.119481935432992 3 3 - 23102825 23103222 23102995.545 23102820 23103260 - gene protein_coding_gene FALSE TRUE AT3G62420.1 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / sequence-specific DNA binding / transcription factor Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to common plant regulatory factor 6 [Petroselinum crispum] (GB:CAC00657.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.337870582255043 3.14878891398385 0.0093788361412664 1 2.85807901828347 20.1613526205518 0.337870582255043 0.116012024772454
AT2G35700_at 2.12951012214315 1.97498051312301 1.12858917196888 1.55927055036554 1.73903234836729 1.68796517859690 1.79226469391097 2.30581008849052 2.21564577413534 1.65604463896888 3.82188319652833 4.07631671298874 3.64550162285454 3.3610599798207 3.22077942882167 2.68390937463402 2.24827002415950 3.02537922691243 2.29133720548175 0.255496150644725 0.248725287966046 0.258804479827589 0.258414129338986 0.243562726799557 0.259355881647679 0.246857473863023 0.244638082068008 0.246101637822626 0.243737244144664 0.247913891683711 0.248187048826312 0.255386170201987 0.244322896636357 0.245909207560035 0.245988981120672 0.248151413167874 0.251141153849854 0.245918958929006 2 2 + 15012287 15012830 15012617.091 15012284 15012868 + gene protein_coding_gene FALSE TRUE AT2G35700.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to DRE-binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G16750.1); similar to transcription factor DREBIII-1 [Brassica napus] (GB:AAW28084.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.342058932109537 3.14848572867542 0.00938387911647173 1 2.85760442680447 4.44704282605511 0.342058932109537 0.119357870124187
AT3G13580_at 8.14735822171874 8.54739767440118 7.77893007068283 7.95072218408286 8.7635636804775 8.3914081670843 8.38316100203833 8.4643502661931 8.22364887253295 7.95026018620839 7.74154607860623 7.98149965626658 7.68868864476289 7.91207693130545 8.06271096905079 7.45789371907498 7.27670275149469 7.46509169116148 8.3400438066183 0.14522344276726 0.14522344276726 0.150361357365841 0.152891134689795 0.14919948962738 0.156556420490928 0.152732957544913 0.146776703519469 0.163800287368365 0.161658488820021 0.152469758704152 0.150466397552256 0.150077461569393 0.154287526484722 0.147545993073263 0.14522344276726 0.164664795965583 0.149363919573720 0.153234294111558 3 3|0 +|/ 4433956 4435078 4434640.3 4433054 4435312 + gene protein_coding_gene FALSE TRUE AT3G13580.1|AT3G13580.2|AT3G13580.3 60S ribosomal protein L7 (RPL7D) Identical to 60S ribosomal protein L7-4 (RPL7D) [Arabidopsis Thaliana] (GB:Q9LHP1); similar to 60S ribosomal protein L7 (RPL7B) [Arabidopsis thaliana] (TAIR:AT2G01250.1); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998) -0.318726041038564 -3.14813015542338 0.00938979698212502 1 2.85704782529883 16.2381583718358 -0.318726041038564 0.100108124383563
AT4G16600_at 0.86119419912189 1.16813801488082 1.83000374327104 1.73028613293955 1.43924375015014 1.23598804162929 1.01154890498643 0.836697367760398 1.41185983880989 1.25610211388923 1.52357140028589 0.831805655406895 1.39764571527253 1.40537525087656 1.39784428599345 1.13713472572991 1.34136605949393 1.37445551270738 1.26220401303409 0.223994965818787 0.223516614594344 0.223305028867112 0.222044204951563 0.223478774304796 0.227291795236868 0.219656463560739 0.221882289716777 0.227524893017403 0.221444290502061 0.223287895259801 0.221136319328449 0.219656463560739 0.234942078468140 0.22624145825652 0.219656463560739 0.228020952217403 0.227116871251544 0.222362710095728 4 0|4 /|+ 9352215 9352690 9352417 9350061 9352729 + gene protein_coding_gene FALSE TRUE AT4G16600.1 glycogenin glucosyltransferase (glycogenin)-related similar to glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] (TAIR:AT2G35710.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE80888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.290290149559934 3.14786379728749 0.00939423250608816 1 2.85663087473251 2.56974009315839 0.290290149559934 0.0726095900539147
AT2G24150_at 8.75483078663894 9.14788132291596 8.16780659604885 8.29762917734818 8.87160878990049 8.59728603198605 9.43621903687837 9.63893516063466 8.99845337588187 8.96077315677236 9.24914483226558 9.73170309815771 9.21045330250793 9.20295267627515 9.20478844784538 9.11922866500094 8.30563650443547 9.15671001419295 9.06413272007457 0.173496826654341 0.164496345362292 0.189994303575529 0.176246092994865 0.164496345362292 0.173904669386556 0.165661497025268 0.164870410141936 0.180505731427843 0.171447052644208 0.167226691735349 0.168590692813395 0.164496345362292 0.179528471293367 0.171221588162126 0.169794384653367 0.192048156920144 0.172806924263528 0.166340107297294 2 2 - 10272743 10273285 10273032.364 10272564 10274468 - gene protein_coding_gene FALSE TRUE AT2G24150.1 HHP3 (heptahelical protein 3); receptor heptahelical transmembrane protein HHP3 similar to HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) [Arabidopsis thaliana] (TAIR:AT4G30850.2); similar to Hly-III related proteins [Medicago truncatula] (GB:ABE86349.1); contains InterPro domain Hly-III related proteins; (InterPro:IPR004254) -0.310546576468607 -3.14772379065484 0.00939656481628131 1 2.85641171065564 17.9417064178746 -0.310546576468607 0.0928207899464055
AT3G22420_at 8.68112978074912 8.58644863661126 8.76455923585458 8.71215367947134 9.02055120921416 8.64983666526029 9.20793457400426 9.15554357609465 9.44045760664433 9.35835411151575 8.97390437551277 8.95695386126471 8.87998472934515 9.19607206684434 8.5401552359539 9.46813204501452 8.83141737080317 8.49913167266192 9.30669730941472 0.106475877795099 0.103184990344920 0.108654779277579 0.100272821160310 0.101581139762882 0.105131957215616 0.112373324245170 0.106347938229481 0.101649940711008 0.101459532287225 0.105164053306979 0.100426676352296 0.107901418814735 0.107350900383288 0.109520219689795 0.107217384121002 0.112059968561995 0.107048934471361 0.101769538216957 3 3 + 7948367 7948935 7948662.273 7946533 7949103 + gene protein_coding_gene FALSE TRUE AT3G22420.1|AT3G22420.2 WNK2 (WITH NO K 2); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. similar to WNK1 (WITH NO LYSINE (K) 1), kinase [Arabidopsis thaliana] (TAIR:AT3G04910.1); similar to mitogen activated protein kinase kinase [Oryza sativa] (GB:AAC32599.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.285636516965633 -3.14700304967243 0.00940858062986715 1 2.85528346273332 17.9906306340908 -0.285636516965633 0.0674435902079667
AT1G03080_at 6.14421651845585 6.69478822973607 7.2677003653719 7.28498777830713 7.42673471335853 6.58075550908987 7.2191782023471 6.84519966418133 6.24760266347608 6.8850331264889 7.42675617548985 7.51823452891065 6.73280986863305 7.555591720596 5.98938249841 7.28783580905439 6.6589286084701 6.75219526489573 6.45576955885271 0.219062872928332 0.221683129741727 0.225451637457896 0.22373297088195 0.223013726472071 0.235780528604023 0.222036619686247 0.224540946356730 0.231633165550794 0.224253775032217 0.225363460874334 0.229565410664269 0.218631224314021 0.222664661341335 0.220820340698576 0.230454519819342 0.223856962907524 0.224567839299256 0.218631224314021 1 1 - 731807 732363 732107.727 731704 737332 - gene protein_coding_gene FALSE TRUE AT1G03080.1 kinase interacting family protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT3G22790.1); similar to M protein repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G14760.1); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT4G02710.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82954.1); similar to Prefoldin; tRNA-binding arm; t-snare; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE80288.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) 0.437473648776673 3.14694020676978 0.00940962905219723 1 2.85518508751459 13.6927877520627 0.437473648776673 0.186302715464688
AT2G36670_at 4.20186754394148 4.3102882374334 4.77455919073229 4.66794672239039 3.97953665816465 4.35568527142324 3.39825744073693 3.84080736628569 3.51510087658450 3.43271413459139 4.02897869404951 3.56035019684643 4.13425665768724 3.6499901229701 4.11768716933698 3.57233798457286 3.8747943270002 3.82701654901766 4.17143393940203 0.215361087246505 0.207632546705550 0.217961945743726 0.206997667315438 0.205067400758682 0.207800507073097 0.200820491348809 0.201620963742741 0.214806167769444 0.198831586654942 0.199661974183037 0.204542796651437 0.208608723662989 0.20432303758952 0.216308455522202 0.203368133009017 0.207009307843603 0.209611860909156 0.198831586654942 2 2|0 -|/ 15372288 15373614 15372918.4 15371867 15375237 - gene protein_coding_gene FALSE TRUE AT2G36670.1|AT2G36670.2 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G22850.1); similar to putative aspartic proteinase nepenthesin II [Oryza sativa (japonica cultivar-group)] (GB:BAD53242.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.322943479702041 3.14645002978377 0.0094178108545036 1 2.8544177519732 7.96716494366072 0.322943479702041 0.103899039937719
AT3G25140_at 9.09541027695319 9.34564662210357 8.62920266017145 8.72366196546282 9.1519273257674 8.8188480344831 9.64998952754036 9.77814458556893 9.49132663010002 9.40184762329172 9.69155035905273 9.70503589549083 9.42786596223838 9.40139880172356 9.68887879260284 9.52370938812635 9.1000952412149 9.36636285277068 9.4284552251742 0.118898878874761 0.113311274686976 0.124894910724839 0.125815904705453 0.109447690650578 0.127082080239654 0.113868335817453 0.109351123945409 0.117494872783961 0.114150674102186 0.114876053920786 0.119190404029972 0.112178604778612 0.119944046201514 0.120930865988079 0.114820567625670 0.127007678163702 0.116370202550677 0.111788153112046 3 3 + 9156106 9156625 9156426.636 9154718 9156852 + gene protein_coding_gene FALSE TRUE AT3G25140.1 QUA1 (QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content. Identical to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) (QUA1) [Arabidopsis Thaliana] (GB:Q9LSG3); similar to GAUT9 (Galacturonosyltransferase 9), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G02350.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96860.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE89660.1); similar to putative glycosyl transferase [Oryza sativa (japonica cultivar-group)] (GB:BAD23465.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.294409377219883 -3.14631179151917 0.00942011956671567 1 2.85420134861909 18.6134315353436 -0.294409377219883 0.0771805024268705
AT3G04400_at 11.7688722472700 11.9432888715637 11.3240152348698 11.5639348895443 11.4537356338853 11.5983570417037 11.5361415727469 11.8318420726999 11.7872933846433 11.7515702951744 11.5440704407185 11.6855990421472 11.5829632117753 11.4683788549644 11.6489309047880 11.2263145289808 11.3545605020870 11.2514273288847 11.7801448354295 0.0763624213598367 0.0721010254816704 0.075330208400312 0.0721952081850201 0.0741855534758295 0.0763445230986602 0.0772781955757674 0.0770482276446197 0.0797315910647678 0.0723754681247051 0.0761957004047794 0.0721897571645885 0.0718934777015344 0.0739106666714837 0.0753238733262878 0.0718934777015344 0.0761826985524324 0.0756000024552802 0.0721542204895079 3 3|0 +|/ 1167619 1168290 1167884.4 1167282 1168665 + gene protein_coding_gene FALSE TRUE AT3G04400.1 EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G04480.1); similar to 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana] (TAIR:AT2G33370.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) -0.293873863845921 -3.14567453791001 0.00943076974257441 1 2.85320375858025 23.2491651656399 -0.293873863845921 0.0766803510185106
AT3G58170_at 9.4466090060339 9.7219156217203 9.74191026525533 9.9112296644642 10.2380872143985 10.0504701337673 9.73060149802348 9.76347523401673 9.14672834960631 9.30866282939864 9.4598513776167 9.4025666869524 9.5744741663073 9.48905277703544 9.39727386682581 9.66065296841277 9.46343948564446 9.43809821441732 9.26107962319537 0.123282545265090 0.119383230231117 0.125939271885826 0.125242304119689 0.123641508571019 0.131585695159621 0.128570029797445 0.120582963410361 0.136808563281498 0.125442141016114 0.122573882917539 0.126521495341798 0.12052290145028 0.128697067793583 0.129988731974412 0.120586327370216 0.135601000094048 0.125875403149244 0.119096624882969 3 0|3 /|- 21553610 21554437 21554037.111 21553336 21554951 - gene protein_coding_gene FALSE TRUE AT3G58170.1 ATBS14A; protein transporter Encodes a Bet1/Sft1-like SNARE protein which fully suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). Identical to Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a) (BET11) [Arabidopsis Thaliana] (GB:Q9M2J9); similar to ATBS14B, protein transporter/ v-SNARE [Arabidopsis thaliana] (TAIR:AT4G14455.1); similar to putative Bet1/Sft1-related SNARE [Oryza sativa (japonica cultivar-group)] (GB:BAD22877.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.283313285845418 3.14490635545248 0.00944362432175192 1 2.85200118524107 19.1877872265275 0.283313285845418 0.0649228688019937
AT1G16280_at 4.61166867451429 4.87505946885586 5.0803935483242 4.77958881668741 5.32551379281804 5.17394422472004 4.73084450996455 4.97863157322603 3.43620582878711 2.93934676302554 3.70848198945269 3.18555771378464 3.40483382646915 3.4428444417884 3.81324426183094 3.55620667083418 3.68153012405937 3.26399784564908 3.202859964206 0.243385390926699 0.251220745151303 0.244116242093637 0.245940682435944 0.252834461904528 0.251425089522468 0.243385390926699 0.243385390926699 0.251615360009698 0.257772405756257 0.248468989557728 0.245788818993795 0.248194968030699 0.24973316810701 0.246352512929791 0.243385390926699 0.249464851825931 0.248675737603227 0.255580425906904 1 1|0 -|/ 5569022 5569475 5569220.125 5568476 5570481 - gene protein_coding_gene FALSE TRUE AT1G16280.1 DEAD/DEAH box helicase, putative Identical to Putative DEAD-box ATP-dependent RNA helicase 36 (EC 3.6.1.-) (RH36) [Arabidopsis Thaliana] (GB:Q9SA27); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE81006.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.302545981445625 3.14489849888246 0.00944375588347846 1 2.85198888583215 8.29440122342536 0.302545981445625 0.085522970504754
AT2G18940_at 4.6491728771921 5.00009590863146 3.71071969263054 4.09269087554016 4.70176177535858 3.93362990680535 4.64861043139208 4.77761470860567 4.18794089741479 4.01542155595494 4.23683756263794 4.9634643307868 4.39539101955278 4.48725250150922 4.39809675407003 4.15776104735362 3.14374141362941 3.06826892432433 4.54015959315466 0.275285472727669 0.275375142449035 0.282921166338677 0.273213780437533 0.266959702704235 0.291929836405337 0.276162203307125 0.274802792046379 0.280765238442596 0.271113452572831 0.268770179029752 0.268206708219824 0.266959702704235 0.286631262210087 0.26805442165267 0.268572026152858 0.295775394165977 0.270133007256127 0.271061074535062 2 2 - 8210967 8211499 8211247.727 8210812 8213477 - gene protein_coding_gene FALSE TRUE AT2G18940.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os05g0275000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055073.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22929.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.400330953406725 -3.14461982429857 0.00944842361499683 1 2.85155262108943 8.6163832102234 -0.400330953406725 0.161944183577630
AT1G17620_at 4.05019250331262 4.59118200705602 4.14161403765917 4.74551593021501 3.86272513724268 4.67964570134205 4.36182834650245 4.77595502634372 5.4376781128092 4.67330155794539 6.61337924177733 6.19589144638199 5.97323491440991 6.35590270197246 5.58848570773679 5.7805919761835 5.72906276547981 5.50500715283844 4.66618862857066 0.221666543551570 0.220644732480725 0.228913212137513 0.224222766532898 0.222184186376089 0.220644732480725 0.22351628143172 0.220800652803900 0.229840690263840 0.223920015092930 0.225563960977085 0.220644732480725 0.226145956806250 0.229970064337140 0.225656832047403 0.220644732480725 0.220644732480725 0.228373233618831 0.225436715143686 1 1 + 6062502 6063039 6062776.818 6062209 6063284 + gene protein_coding_gene FALSE TRUE AT1G17620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11890.1); similar to Heavy metal transport/detoxification protein; Harpin-induced 1 [Medicago truncatula] (GB:ABE94112.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.477278726358402 3.14446946646083 0.009450943044215 1 2.85131723484987 9.84779096360385 0.477278726358402 0.211681102409079
AT2G36740_at 5.59110413696024 5.78009234331389 5.10660855799069 4.93099147111733 5.73260692795318 5.41652813873233 5.33715907768801 5.16591912329959 4.95823710506128 4.94927573807431 4.76008304553818 4.94682171353767 4.24244337419835 4.74955923329302 4.3761218688626 4.81319265770144 5.08729269256993 4.50035358346756 5.39198436352361 0.225360662434627 0.215949967415976 0.223942655211405 0.213574335783474 0.221512630976929 0.220223618762711 0.218387078273245 0.215559481972936 0.235178405436103 0.224680080355425 0.217577787739365 0.220713662190351 0.217455482571658 0.212572847030873 0.223131234799398 0.21295381323493 0.216461514967749 0.225512237523007 0.212572847030873 2 2|0 -|/ 15414171 15415305 15414698.8 15413769 15416914 - gene protein_coding_gene FALSE TRUE AT2G36740.1 DNA binding similar to DRP1 protein [Triticum tur (GB:CAF22032.1); contains InterPro domain YL1 nuclear; (InterPro:IPR008895); contains InterPro domain YL1 nuclear, C-terminal; (InterPro:IPR013272) -0.293616888720348 -3.14401447062472 0.00945857120752472 1 2.85060493052144 10.2747841838148 -0.293616888720348 0.0765728904963775
AT1G47970_at 7.44243747072203 7.45143591502163 7.15311700865562 7.33684527270255 7.44680340781161 7.2422854941337 6.69524480172784 7.0268997919665 6.5975643351393 6.96935120643299 7.3558171417094 7.35635108698561 7.41075920786234 7.22215880032913 7.42848824791902 7.36743917802766 7.09410112916032 6.9438932802417 6.92216792855594 0.121207131458906 0.118221320644654 0.119996700779232 0.117823990581642 0.122012970966697 0.119502632211117 0.124055112384551 0.120191009158691 0.128933751592356 0.119841737930283 0.117267429412484 0.119683244424915 0.115296889761142 0.118974469405703 0.117377439647835 0.117278602380861 0.123824951513618 0.120033538141474 0.117346029150750 1 1 + 17691062 17692202 17691761.545 17690938 17692485 + gene protein_coding_gene FALSE TRUE AT1G47970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17160.1); similar to conserved hypothetical protein [Bacillus weihenstephanensis KBAB4] (GB:ZP_01184818.1); similar to Os01g0332900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042934.1) 0.291719909976512 3.14386116719372 0.00946114279932745 1 2.85036492943410 14.2754188948788 0.291719909976512 0.0745662116743672
AT1G48200_at 2.51455827740345 2.96474104255143 2.77228385733754 3.14143641615207 2.66009466398229 2.83185333809671 2.02146072814764 1.95991592217586 2.02580900926712 2.09433630336000 2.36958429078232 2.29297796777885 1.91134091688147 2.13246411704099 2.46065971263334 2.2551899537902 2.54478753581647 2.07405280507428 2.15617344130922 0.235802413605203 0.241101830700242 0.240190550622588 0.249712575175355 0.246979739495140 0.245051508418625 0.240703024920754 0.236880276487976 0.251511271501069 0.240898158598249 0.239631922330522 0.244001694093797 0.246869489943836 0.249079975934763 0.25171392402455 0.240223131536925 0.254160734644197 0.248597225358647 0.235802413605203 1 1 - 17801220 17801487 17801327.333 17800433 17802006 - gene protein_coding_gene FALSE TRUE AT1G48200.1 similar to Os06g0149500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056817.1) 0.32463699374259 3.14367904826281 0.00946419867914496 1 2.8500798156761 4.7819122376243 0.32463699374259 0.105581349442023
AT1G11200_at 5.969997605406 6.3569312663596 5.59823279004208 5.92549040519518 5.49406893851515 5.72810548742826 4.41900260994864 5.29926486442183 5.11837704197242 3.98546242017962 5.20721379672062 5.47394862308281 5.47989451452598 5.26336603497156 5.07932218957905 5.15761399087649 4.99699669126997 4.94580505198673 4.45628215374385 0.233376966451503 0.232835865162455 0.232646715782032 0.223090408628913 0.227642276713821 0.232128298069147 0.225375829557830 0.226008497236502 0.239939991254695 0.238874688598353 0.227423592618865 0.223090408628913 0.224170788193001 0.23165696022281 0.224376251216887 0.226234652154079 0.248349974167108 0.233043054129649 0.223835322108074 1 1 + 3754364 3755396 3754740.636 3753365 3755639 + gene protein_coding_gene FALSE TRUE AT1G11200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21570.1); similar to unknown [Medicago sativa] (GB:AAZ32885.1); similar to Os07g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059733.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.427827445877921 3.14316084258841 0.00947289943352306 1 2.84926853918690 10.4591670710439 0.427827445877921 0.180379911551131
AT3G01390_at 8.50459405327073 8.90390798762919 8.71526425448675 8.83621443746908 8.54540063634973 8.42174645756606 9.12590702123578 9.3632084061431 8.82935628595219 9.27161726504247 10.2201365601073 10.2562646147742 9.92365226186505 10.1279235664892 10.1699338996786 10.0242702890720 9.77210607321712 8.99958205754693 8.85919273122926 0.168737475983852 0.161510201524303 0.159058397745322 0.157546576971856 0.163214766719295 0.169591953423184 0.157195251235922 0.15846538303358 0.173892158905628 0.162509133697433 0.157932618035207 0.157382208778082 0.157029971200876 0.160657501742618 0.159633183521750 0.160782683841347 0.170211297551345 0.171779547792655 0.164309227036612 3 3|0 -|/ 150292 150896 150560.222 150011 151538 - gene protein_coding_gene FALSE TRUE AT3G01390.1|AT3G01390.2 VMA10 (VACUOLAR MEMBRANE ATPASE 10) Subunit G of the vacuolar membrane ATPAse complex Identical to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (VATG1) [Arabidopsis Thaliana] (GB:O82628); similar to (VACUOLAR ATP SYNTHASE SUBUNIT G 2, VACUOLAR ATP SYNTHASE SUBUNIT G2), unknown protein [Arabidopsis thaliana] (TAIR:AT4G23710.1); similar to Vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (GB:O82702); contains InterPro domain Vacuolar (H+)-ATPase G subunit; (InterPro:IPR005124) 0.302631825333678 3.14307589624915 0.00947432646973028 1 2.84913555055201 18.263758286478 0.302631825333678 0.0857769786228249
AT1G65950_at 6.87506754801819 6.57680628746809 6.50770374933782 6.11309301405319 7.45679161819492 6.27619888705271 7.63242140374752 7.2396766028568 7.12414147429856 6.72302480150344 6.14408264167849 6.32959160223693 5.92929670999918 6.86266792263165 5.68824001035535 7.05790579234087 5.9641390515379 6.15460033524323 6.53206187423231 0.221433054962537 0.229298098342906 0.226760959335554 0.219048808945361 0.223972988321843 0.244856175029137 0.224249748164794 0.220977958881134 0.218242343886723 0.226192936067786 0.222896616386171 0.226246834858015 0.220720970330589 0.218716948651842 0.229753224237063 0.222210715987932 0.238587167141767 0.233463329775943 0.224037255788725 1 1|0 -|/ 24550556 24551685 24551042.3 24550367 24554807 - gene protein_coding_gene FALSE TRUE AT1G65950.1 ABC1 family protein similar to ATATH9 (ABC2 homolog 9) [Arabidopsis thaliana] (TAIR:AT2G40090.1); similar to ABC1 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94171.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.509653342560735 -3.14251220621571 0.00948380157533654 1 2.84825305285526 13.3644156679733 -0.509653342560735 0.231707534455999
AT1G21980_at 5.72026630470033 4.75089699739803 4.79067853567601 4.23535879742157 5.63129193428063 4.74704245550063 7.12302297319489 5.84645988628646 7.71741325398765 7.22309008502877 7.93757297222626 7.75173218834883 7.23389862519764 6.83764218190245 7.77873776784794 6.90117125721169 6.7483297044154 6.64988303098395 7.8016853606428 0.253526932090148 0.255635498192275 0.264386325507259 0.271909626238328 0.260763301038239 0.276219159597886 0.254256103375678 0.265278955447046 0.267150790744914 0.250395916581331 0.253202238010412 0.250395916581331 0.253683558137432 0.25612267253517 0.268397589447073 0.254280424275886 0.259164377451229 0.254265039397760 0.250395916581331 1 1 + 7737257 7738261 7737865 7734728 7738650 + gene protein_coding_gene FALSE TRUE AT1G21980.1 ATPIP5K1 (Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase 1); 1-phosphatidylinositol-4-phosphate 5-kinase Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. Identical to Phosphatidylinositol-4-phosphate 5-kinase 1 (EC 2.7.1.68) (AtPIP5K1) (1-phosphatidylinositol-4-phosphate kinase 1) (PtdIns(4)P-5-kinase 1) (Diphosphoinositide kinase 1) (PIP5K1) [Arabidopsis Thaliana] (GB:Q56YP2;GB:O22503;GB:O82120;GB:Q9LM65); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT1G77740.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT2G26420.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); similar to putative phosphatidylinositol-4-phosphate-5-kinase [Zea mays] (GB:AAL76002.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABE83677.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.679963605105759 -3.14129690500314 0.00950426237379403 1 2.84635037022113 12.7609275018422 -0.679963605105759 0.33105349593652
AT2G35736_at 4.05996117408041 4.1675004056873 4.60841897720955 4.38243253916194 4.63415987765372 4.76851250779169 4.33943194509365 3.65955216628532 3.85871878508342 3.43293397420607 3.85900774840213 3.36461405779446 3.8665484108319 3.92819664946422 3.68509154810878 4.04807727023746 4.13311733735859 3.94329428173156 3.78360217957894 0.197002392703349 0.20110518885076 0.208593031461475 0.205700326077223 0.198735709064190 0.22284460790694 0.197002392703349 0.206664940165415 0.21253401770935 0.202388525131065 0.198528654133609 0.200527133782938 0.200382870701042 0.200279739902051 0.197002392703349 0.197179737188228 0.209567231333274 0.205029396910217 0.206648418167705 2 2 - 15030163 15030294 15030238.091 15030163 15030333 - gene protein_coding_gene FALSE TRUE AT2G35736.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25225.1); similar to Os08g0156000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061022.1); similar to Os07g0239500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059260.1); similar to Os02g0279800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046552.1) 0.351755659684606 3.14077733971882 0.00951302342730723 1 2.84553691905675 8.10011872876076 0.351755659684606 0.127512249644348
AT2G22420_at 1.75325960571377 2.02987291993796 2.13041303204311 2.02094504121907 2.35694959658969 2.07249100058287 2.50913418664126 2.46594855581341 2.69105933576121 2.38536443168383 1.74083168988115 2.19552334214168 2.49311545646211 2.26563329818202 2.15873625839862 1.72596889534939 1.98845990212516 2.13620979293509 2.78712598930961 0.172100120085136 0.167800795849788 0.176812783443997 0.167800795849788 0.171224204790336 0.172581708435433 0.172731641123951 0.170731725780826 0.177745106588782 0.178831708842558 0.171769448774075 0.169143487583930 0.16869201877807 0.167800795849788 0.176033172337481 0.178301430267375 0.180659988113645 0.173462606460859 0.178387869249768 2 2 + 9521017 9521433 9521188 9520299 9521615 + gene protein_coding_gene FALSE TRUE AT2G22420.1 peroxidase 17 (PER17) (P17) Identical to Peroxidase 17 precursor (EC 1.11.1.7) (Atperox P17) (ATP25a) (PER17) [Arabidopsis Thaliana] (GB:Q9SJZ2;GB:P93725); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar to gaiacol peroxidase [Gossypium hirsutum] (GB:AAL93152.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.288738786117534 -3.14074128389013 0.00951363171453157 1 2.84548046830947 4.52199828316062 -0.288738786117534 0.0716203526886941
AT3G58620_at 3.58528504991495 3.99317274820938 3.38010922329847 3.72156033532081 4.08182193757852 4.19825428956731 4.17627386497139 4.51266316846704 5.59780147467175 4.52107626207451 8.11014624607903 5.54360043890322 6.27155083627144 6.59769941393782 6.03017753739299 5.73251891777013 3.89821025583834 5.9591878188768 5.28765337761243 0.249070566581691 0.240190239517925 0.257548847491101 0.242346735698617 0.247902567906945 0.240522786265090 0.255122669924703 0.247356376297773 0.248472553982218 0.240190239517925 0.265879509962766 0.240190239517925 0.247311863920008 0.248066733381113 0.241893750967298 0.249120135944266 0.246119339134598 0.240190239517925 0.242991242913033 3 3|0 +|/ 21693110 21693907 21693538.111 21691303 21694112 + gene protein_coding_gene FALSE TRUE AT3G58620.1 TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4); binding similar to TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3), protein binding [Arabidopsis thaliana] (TAIR:AT2G42580.1); similar to Os01g0218200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042410.1); similar to 4D11_10 [Brassica rapa subsp. pekinensis] (GB:AAZ67524.1); similar to Os01g0616300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043576.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.330481900115707 3.1401547487798 0.00952353251768437 1 2.84456215385576 9.5328409794593 0.330481900115707 0.110765190864658
AT1G15340_at 8.56918680920217 8.89936181030698 8.66502199765534 8.72259090917156 9.3001055593103 9.14530499828691 9.41147868480856 9.45749019764994 9.09955214213506 9.2635503231015 8.73416386233634 8.77847218706885 9.03143364795209 8.93003391773043 8.1646981202828 9.19618957354005 8.8739876873524 8.78275210216617 9.38664385358704 0.123877036117240 0.131434351108732 0.124071750966469 0.131306676133214 0.119715119956739 0.138835512189807 0.121122067304973 0.122602167773312 0.130240442806861 0.126363810788214 0.120161359321804 0.123651595594530 0.12971391555837 0.123545525084627 0.122561801692877 0.123094878739400 0.131561941480549 0.128789793322765 0.126525974316099 1 1 - 5275890 5276377 5276151.273 5275672 5277684 - gene protein_coding_gene FALSE TRUE AT1G15340.1 MBD10 (methyl-CpG-binding domain 10); DNA binding Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. similar to MBD11 (methyl-CpG-binding domain 11), DNA binding [Arabidopsis thaliana] (TAIR:AT3G15790.1); similar to putative methyl-binding domain protein [Cryptomeria japonica] (GB:BAE92286.1); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739) -0.282286280845055 -3.13847783243099 0.00955189681483164 1 2.84193660342727 18.0520085342547 -0.282286280845055 0.0643823785263876
AT3G21620_at 0.6396680608076 0.67910068104323 0.819670449487689 0.90786274143468 0.401139975167201 0.105633524215240 0.799321135847453 0.887701348213638 1.40405472391687 1.29083102353342 0.488676923328295 1.10305314511231 1.06570448559525 1.10859130318836 0.810506706236615 0.672477004618077 1.46598351460981 0.833202734853088 1.21111726662445 0.209777359410044 0.214765933479305 0.210093991202985 0.217105216940409 0.216310800426957 0.209777359410044 0.215971827200439 0.21321811726001 0.209777359410044 0.216085235253336 0.213038675718342 0.214771017754394 0.223338937828300 0.212903943364172 0.210172297664556 0.215130562112758 0.212213081337896 0.214749206403035 0.22546554708176 3 3 - 7611055 7611746 7611386.455 7610965 7614468 - gene protein_coding_gene FALSE TRUE AT3G21620.1 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G04340.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15430.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) -0.275673830700316 -3.13829621206458 0.00955497398079993 1 2.84165223395894 1.77777498046924 -0.275673830700316 0.0559338632076774
AT3G14880_at 2.27346494447728 2.3914224089121 2.34330688844661 2.42270903567073 2.39256840235159 1.94856881101983 2.67363949589547 2.64037448790399 2.68213953734323 3.03940456028894 2.49383343670368 2.23314134880382 2.88518267375283 2.24483137229315 2.79367083496851 2.43306797860122 2.43772789927244 2.99407607896848 3.10119418283638 0.238227718185221 0.226518872001629 0.231999659129149 0.237678188668106 0.229157792345990 0.227042507663763 0.237423748922748 0.226683242058524 0.252221502421711 0.228495353719485 0.227330317805358 0.231562082385673 0.227547914419836 0.22899511169639 0.22939948676505 0.226518872001629 0.226518872001629 0.249967296512771 0.231401637708132 3 3 + 5006752 5007630 5007277.6 5006572 5007696 + gene protein_coding_gene FALSE TRUE AT3G14880.1 similar to DOG1 (DELAY OF GERMINATION 1) [Arabidopsis thaliana] (TAIR:AT5G45830.1); similar to tumor-related protein-like [Medicago truncatula] (GB:ABD32966.1) -0.297204178580342 -3.13783909362843 0.0095627233186741 1 2.84093650202922 5.13843391587305 -0.297204178580342 0.0808853985455019
AT2G41890_at 5.57050154312123 6.29077986007043 5.48234913076828 6.2973454487044 6.72690433127817 5.92045811552349 7.7115496482192 7.61543376291538 6.10594221997281 6.83136690341729 5.89016785341731 6.11727544653041 6.20219488467131 6.52180872243272 5.69007110034771 6.557947892709 6.15698661072686 6.33894292603916 6.62987041834074 0.240163499911330 0.234380649084365 0.232154069875161 0.246744970247032 0.237861238425143 0.244109609310944 0.240876035911196 0.247121091473281 0.257210444269351 0.233507087562965 0.239810238622304 0.231761545777859 0.232993769370167 0.23421502546129 0.238206532022606 0.230647128362785 0.239030732540177 0.236733201607606 0.23279959910902 2 2 - 17485145 17485670 17485381.455 17485136 17487430 - gene protein_coding_gene FALSE TRUE AT2G41890.1 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34300.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE87106.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain N/apple PAN; (InterPro:IPR003014); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.514135348990305 -3.13755925022305 0.0095674705322056 1 2.84049833422816 12.8053240351682 -0.514135348990305 0.234909427170977
AT2G14750_at 11.2150861533467 11.2087227082578 11.3368637991383 11.1619198491067 11.3655966062087 11.0673864395830 11.5023826451561 11.4742272986137 9.95378245508061 11.0640917159642 11.2594968045197 11.0826169889473 11.1034802321065 11.2700575488804 10.4211866031073 11.1249814434344 11.4117801199886 11.2053166779368 10.287946837353 0.0982348946229575 0.0936854813939179 0.095727924256662 0.101203426499410 0.101193815475670 0.101718771764447 0.0958942100997757 0.0959192849297095 0.108262560026910 0.0962345890775546 0.0960843008370115 0.0950023948244883 0.0955644736325212 0.098239286080196 0.0988630565035769 0.0928652699309631 0.106749692355054 0.0952780449362108 0.0995948402769431 2 2|0 +|/ 6321600 6322512 6322045 6321114 6322848 + gene protein_coding_gene FALSE TRUE AT2G14750.1 APK (APS KINASE); ATP binding / kinase/ transferase, transferring phosphorus-containing groups Encodes a functional APS kinase Identical to Adenylyl-sulfate kinase 1, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'-phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase) (AKN1) [Arabidopsis Thaliana] (GB:Q43295); similar to AKN2 (APS-KINASE 2), ATP binding / kinase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] (TAIR:AT4G39940.1); similar to Adenylyl-sulfate kinase, chloroplast precursor (APS kinase) (Adenosine-5'-phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) (GB:O49204); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) 0.278713927532416 3.13751666920524 0.00956819307845921 1 2.84043166229462 22.0640922983419 0.278713927532416 0.0600397203636251
AT3G04600_at 7.19760180305607 7.57917018799912 6.2926173952203 7.43922059851859 6.47644707190453 6.38149702296795 7.07227415893539 7.7240977456761 5.40800239248385 5.84434469622673 5.3240583270607 5.59382845860173 5.32967664498357 5.03132195246214 5.50901071889756 5.56748107795618 5.81822151433254 5.73348222223741 6.09244415567715 0.271464681800643 0.272667259108531 0.271218835383436 0.269485857020753 0.270026231638598 0.266315846056103 0.269606424642948 0.282656876052595 0.301143803045311 0.263341085629972 0.268150201981901 0.262680779614307 0.268491765609341 0.269661366354698 0.276569971007567 0.262680779614307 0.275619299271772 0.264414545946756 0.262680779614307 3 3|0 +|/ 1244267 1245919 1244796.2 1242979 1246217 + gene protein_coding_gene FALSE TRUE AT3G04600.1|AT3G04600.2|AT3G04600.3 tRNA synthetase class I (W and Y) family protein similar to Tryptophanyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99449.2); similar to Os12g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066951.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -0.519526209329961 -3.13746285300190 0.00956910635083403 1 2.84034739858893 12.6553568460493 -0.519526209329961 0.238173948597739
AT1G63900_at 7.89793124521268 7.88393737297195 7.90187159814906 7.94397711289747 8.20242638572301 7.80628047300184 8.27439104503926 8.01837751089443 8.16665189932675 7.97144117213175 7.77629821774223 7.15996860139632 7.49664942389302 7.68695446233915 6.97464054427419 7.81316875237895 7.46875326801789 7.34817078591088 7.8828919194175 0.132326067175318 0.128277800765652 0.128726959089177 0.129885311689933 0.126433925249421 0.135780345952647 0.129562365402451 0.127058262673285 0.134747138017683 0.127382207265846 0.126192236223821 0.128444164225024 0.131391722672831 0.125336050309644 0.131389731098874 0.125946807569336 0.137719144266166 0.129993449766437 0.129708454074791 1 1|0 +|/ 23720727 23722725 23721888.824 23720382 23722964 + gene protein_coding_gene FALSE TRUE AT1G63900.1 zinc finger (C3HC4-type RING finger) family protein similar to ZCF61, protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G59560.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE86663.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.298219945525662 -3.13706929867056 0.00957578773895477 1 2.83973118048664 15.7274343449626 -0.298219945525662 0.0819854057075895
AT2G28360_at 3.87106571957421 3.48453566881357 3.81466581038193 3.28230090556814 3.44090078650398 3.77073218892617 2.78463824437802 3.01969651841316 3.04960708859968 2.82530360952334 3.61085677411829 3.6473987027284 3.50756333686437 3.66015511852893 3.1525372702212 3.22880685669143 3.1439538028363 2.88269671600701 2.89237237216498 0.190332508831983 0.188266695725482 0.185567388480904 0.184450210047428 0.184479307784455 0.183566794630196 0.182043118705522 0.183006767057642 0.192862182378520 0.184145797163932 0.187226106845419 0.185334658403063 0.186091645425767 0.182043118705522 0.182043118705522 0.186659839734721 0.186153168417081 0.193238183454284 0.187768362937182 2 2 - 12131791 12132242 12131998.727 12131681 12136956 - gene protein_coding_gene FALSE TRUE AT2G28360.1 SIT4 phosphatase-associated family protein similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT3G45190.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G30470.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G07990.1); similar to Os04g0620400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053906.1); similar to Os05g0592500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056496.1); similar to H0714H04.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66980.1); contains InterPro domain SIT4 phosphatase-associated protein; (InterPro:IPR007587); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.359492133601902 3.13647237878051 0.00958593070365503 1 2.83879652664765 6.57190386149265 0.359492133601902 0.13369623831596
AT3G52930_at 10.7158574928857 10.8165027557948 10.9922263293144 11.0972200114279 10.4356136852716 10.5433957535973 10.9724267285324 11.3312660705339 10.6094265677686 10.4577184708639 11.3374430423965 11.4728835019965 11.1411207999703 11.2112410240796 11.5356200239650 10.9776415210271 11.0053777198340 11.0801622870050 10.2989375705149 0.0706627238549475 0.066135380816198 0.0691436409519942 0.066135380816198 0.0686971989966474 0.0693730396860106 0.0665221384988392 0.0662769968306767 0.0693131670399025 0.0694140707901585 0.066135380816198 0.066844689100409 0.069039665044675 0.0708179072216269 0.0673114669984582 0.0663707306573248 0.0720007634082438 0.066135380816198 0.066406523606129 3 3 - 19638420 19638884 19638676.636 19637726 19640051 - gene protein_coding_gene FALSE TRUE AT3G52930.1 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G36460.1); similar to Fructose-bisphosphate aldolase, class-I [Medicago truncatula] (GB:ABE84500.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) 0.286463026642263 3.1359519136646 0.00959478342708773 1 2.83798157473569 21.7008371582948 0.286463026642263 0.0695532916052621
AT2G44710_at 3.83324157775972 3.9111515249544 4.34419815237742 4.33252485202865 4.41665469258234 4.11604854976194 4.02330459967575 4.05909911258881 3.54428488953981 3.43685323375256 3.56865497949133 3.46046211142891 3.58837353277449 3.95101293229299 3.72734530706101 3.72385435178091 3.79784047811728 3.63837953706873 3.45702936202377 0.166200133596608 0.162156842567729 0.1678747913188 0.164527297559817 0.167419480552566 0.169694430865948 0.16476608914789 0.164952890588046 0.169437523692104 0.164013411182868 0.162296137883243 0.163312667898337 0.166926369723913 0.165402744137122 0.163590166540153 0.162400857453814 0.17494287188378 0.168750031128103 0.166003611047175 2 2|0 +|/ 18440871 18443641 18442330.25 18439794 18444207 + gene protein_coding_gene FALSE TRUE AT2G44710.1 RNA recognition motif (RRM)-containing protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G00830.2); similar to Os04g0543200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053453.1); similar to putative heterogeneous nuclear ribonucleoprotein [Vitis vinifera] (GB:AAN77868.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.274129299961416 3.13554801020663 0.00960165923695058 1 2.83734913003288 7.71021766547813 0.274129299961416 0.0541336249332993
AT1G12080_at 3.64823868243886 3.42102988849978 3.24670150509300 3.43140319719868 2.92047022524514 3.25721523027930 3.50755034475455 3.17641787147428 3.77334808168152 3.380732944887 4.92290014996611 6.22419315002728 3.86435287930929 4.48450242324069 5.523942076336 3.84280233460029 4.25227397836833 4.50961116688435 4.40429305746886 0.167750841207605 0.166446880380567 0.175860154579623 0.176639097061881 0.172442398157241 0.167815323763124 0.168033463699147 0.167278811236388 0.177136721753254 0.172281885331545 0.176092145469944 0.209335937891568 0.183243480077131 0.168196791098494 0.196690591541281 0.166446880380567 0.173332683395049 0.171290802916575 0.176062629577898 1 0|1 /|+ 4084489 4084859 4084669.5 4084160 4085041 + gene protein_coding_gene FALSE TRUE AT1G12080.1|AT1G12080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59370.1); similar to vacuolar calcium binding protein [Raphanus sativus] (GB:BAA99394.1); contains domain UNCHARACTERIZED (PTHR22683:SF23); contains domain SPORULATION PROTEIN RELATED (PTHR22683) 0.312959625578957 3.13500234031039 0.00961095632950654 1 2.83649469365775 7.60406018371662 0.312959625578957 0.096163669893556
AT1G17550_at 8.0857939178377 8.19627271392586 8.91875083063491 8.59754331422415 9.0744202841347 8.63023487642358 8.99460529361974 8.84930595762811 8.15693526136384 7.9030215064112 8.63047249616975 8.17247137779466 8.3691418267154 8.18369886474657 7.62553941446214 8.2805394690318 8.61577268691632 8.477322495268 7.74086991631053 0.167167950333437 0.163604024293878 0.163952495247131 0.165055442433551 0.180522863790927 0.168381443198419 0.189027793477557 0.169089424549282 0.185706559884635 0.171923779243474 0.171052545524567 0.169313039627553 0.169562536531227 0.179707634924555 0.182587672228403 0.1702324161703 0.174831773256544 0.174475193279484 0.191051042875472 1 1 + 6036095 6036836 6036588 6034355 6037282 + gene protein_coding_gene FALSE TRUE AT1G17550.1 HAB2 (Homology to ABI2); protein phosphatase type 2C Protein Phosphatase 2C similar to HAB1 (HOMOLOGY TO ABI1), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G72770.1); similar to Os05g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056498.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:AAT39223.1); similar to Os01g0583100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043415.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.317251894897186 3.13498942583482 0.009611176476154 1 2.83647447141609 16.7823552603452 0.317251894897186 0.0999819342293392
AT4G34350_at 12.0180136205407 11.9597720859581 12.2664247417849 12.0944759298012 12.0037797147077 11.7426039161221 13.1428307692261 12.8590564374396 12.9061826041111 12.9641201398972 13.0054439874165 12.8354267786129 12.6786064931919 12.8066016664731 12.4625323607862 12.9806158534608 12.8486207924064 12.7400259469753 12.8505597343362 0.0897660836720313 0.087509668822921 0.0898444066310223 0.0870284213883845 0.086902775909999 0.089065827845023 0.0878254856451402 0.086658250741858 0.0947694333930973 0.0864831934428481 0.0889233610097674 0.0864831934428481 0.0865194267274887 0.0962106356046 0.0968229181900653 0.0864831934428481 0.0879709464898733 0.0908948400178325 0.0876244906951672 4 4|0 -|/ 16428845 16429670 16429200.3 16428484 16431118 - gene protein_coding_gene FALSE TRUE AT4G34350.1 CLB6 (CHLOROPLAST BIOGENESIS 6); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling. similar to IPP/DMAPP synthase [Stevia rebaudiana] (GB:ABB88836.2); similar to LYTB-like protein precursor [Adonis palaestina] (GB:AAG21984.1); similar to LYTB-like protein precursor-like [Solanum tuberosum] (GB:ABB55395.1); contains InterPro domain LytB protein; (InterPro:IPR003451) -0.290158538609976 -3.13498224155967 0.00961129894513594 1 2.83646322185500 25.1117138491293 -0.290158538609976 0.0737665960064426
AT1G72530_at 2.30291291947003 2.72021618014586 2.6031959477756 2.78386300609988 2.72486130314102 2.85181465862677 2.47674102983829 2.24739173198666 2.49167388511242 2.65904778917074 3.08177417350903 2.86065500274237 2.63909003851140 3.16832257500599 2.88525013351162 2.96012913635986 2.49197335517856 3.00004760224324 2.5764758433838 0.184154344505260 0.183061993802975 0.185342181866550 0.185738733560447 0.193656069061717 0.190694834708101 0.195631612711971 0.185635225463968 0.183916539572576 0.184014586538451 0.184982037138532 0.189769424982661 0.18728721552203 0.183061993802975 0.18745349696683 0.183061993802975 0.190767214087078 0.190072373724728 0.186529850003243 1 1|0 +|/ 27316664 27317503 27316936.556 27316661 27317599 + gene protein_coding_gene FALSE TRUE AT1G72530.1 plastid developmental protein DAG, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15000.1); similar to Os09g0509000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063625.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1); similar to Os09g0132600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062627.1) 0.30714550489719 3.13493472857733 0.0096121089298156 1 2.83638882318273 5.31969347614639 0.30714550489719 0.0908332349095333
AT3G03900_at 4.32052356256373 4.31491950996913 4.05804774928199 4.17567855757927 3.66929621803629 4.11243518615201 4.55753001146463 5.34819972676588 4.38505364483271 4.82743429386163 4.57990513025571 4.70449696385625 4.54843007481349 4.90391571612185 4.51906946526764 4.30126103284455 4.52351267224208 4.43163231849074 4.94618488148375 0.198294517743134 0.197316291163633 0.195282835248195 0.201807813856252 0.198154836603052 0.204398649803843 0.203959752128226 0.215838720318814 0.199423710272867 0.207526550191164 0.193941779727942 0.201226697552813 0.194880116476308 0.197496989815041 0.193941779727942 0.195569293099471 0.205587787759131 0.197381023635612 0.199172596429542 3 3 - 1003028 1004224 1003557.273 1002982 1004278 - gene protein_coding_gene FALSE TRUE AT3G03900.1 adenylylsulfate kinase, putative similar to APK (APS KINASE), ATP binding / kinase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] (TAIR:AT2G14750.1); similar to adenosine-5'-phosphosulfate kinase [Zea mays] (GB:AAF17236.1); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) -0.393479229958971 -3.13401376651238 0.00962782285009624 1 2.83494670964281 8.9613715794579 -0.393479229958971 0.158172261518831
AT1G04870_at 7.93299817928501 8.37784968010576 7.54476565869439 7.61854647267964 7.30239508207606 7.26607582113051 7.21525398811141 7.58781893838282 7.08090840276894 6.47270157709548 6.61266694874642 6.6160016550904 6.32745216976247 6.64598477616822 6.84261937591007 6.07124973195396 6.46932361265466 6.037634096129 6.68112538452137 0.200909377429715 0.204209626680515 0.204619408442057 0.200909377429715 0.210179743758961 0.204661857251861 0.205950780088847 0.200909377429715 0.204147913698278 0.211796635735323 0.200909377429715 0.204401440337477 0.200909377429715 0.201212966777274 0.200909377429715 0.207856614671992 0.205069531882064 0.203362858598788 0.202322047806792 1 1 - 1373513 1374345 1373887 1373233 1375761 - gene protein_coding_gene FALSE TRUE AT1G04870.1|AT1G04870.2 protein arginine N-methyltransferase family protein similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G20020.1); similar to Os06g0142800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056772.1); similar to Ar (GB:CAL54346.1); contains domain no description (G3D.2.70.160.11); contains domain PROTEIN ARGININE N-METHYLTRANSFERASE 2 (PTHR11006:SF13); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain PROTEIN ARGININE N-METHYLTRANSFERASE (PTHR11006)|similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G20020.1); similar to Os06g0142800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056772.1); similar to Ar (GB:CAL54346.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.3187898400764 -3.13394340141246 0.00962902452565298 1 2.83483652528484 14.2046021445234 -0.3187898400764 0.101419511749460
AT3G12010_at 7.39791198362276 7.5854648272572 7.21412964558311 7.14042836435226 7.7447247149215 7.59041571552999 8.24687691754766 7.94234818593764 7.10596562640468 7.45822930589309 7.42738244400044 7.55717662678431 7.25335706852867 7.0091322640349 6.7355527131053 7.19941190095666 7.10973831092394 7.27049798828905 7.62141992222291 0.210547565022405 0.204117294559126 0.200738630865738 0.198298519466218 0.196026470618462 0.196026470618462 0.210106796627975 0.198381145964431 0.207052814972537 0.206751653857525 0.198624868094269 0.196694859523152 0.196026470618462 0.198814674902048 0.209645795517790 0.197335841321208 0.213717013171957 0.205763199812796 0.201216973940335 3 3|0 +|/ 3824692 3825512 3825149.6 3821523 3825771 + gene protein_coding_gene FALSE TRUE AT3G12010.1 similar to Colon cancer-associated protein Mic1-like containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47549.2); similar to Colon cancer-associated protein Mic1-like containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47548.2); similar to Putative Mic1 homolog [Oryza sativa (japonica cultivar-group)] (GB:AAK50423.1); contains InterPro domain Colon cancer-associated Mic1-like; (InterPro:IPR009755); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047) -0.285324827711795 -3.13255357607041 0.00965279076844523 1 2.83266016853724 14.9030306023864 -0.285324827711795 0.0686041081267335
AT2G22190_at 6.0937085535954 6.81637004314008 6.41278973633706 6.66012420738566 7.22037455109582 6.14593861188003 7.65770348665385 7.80705829080014 5.53027099632682 6.22242711648507 7.18148441221841 8.12225995588861 7.8370473664169 7.41694196289592 7.06508267844027 7.79223803461015 7.28270273293987 7.03695235219326 6.16922140198552 0.226621388301478 0.218474187899842 0.221727247021008 0.225855115572333 0.220145529047493 0.225293801356297 0.224991389901823 0.221013915884801 0.2332447604837 0.224409308729363 0.222993949107442 0.217732244121759 0.219731500347284 0.242638965728885 0.236278242305209 0.217732244121759 0.234073763073429 0.232395866761742 0.227611432126399 2 2 - 9441196 9442232 9441775.091 9440845 9443624 - gene protein_coding_gene FALSE TRUE AT2G22190.1 trehalose-phosphatase similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G39770.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) 0.504481099239281 3.13205666260176 0.00966130249814445 1 2.83188202461457 13.5721643643858 0.504481099239281 0.229591656655644
AT2G46270_at 5.47149460105452 5.40018541280927 6.03220832668092 5.54470857812167 4.66263739813105 4.42947848745683 3.76438506319288 3.89938138998872 3.49140299299751 3.22194352175668 3.09508270823751 3.20941935324929 3.59041325171086 3.23365484653029 3.42912222952636 4.18382980828141 4.22755957523052 3.22121943040965 3.57596932958748 0.285738216215579 0.280465585173968 0.280500017602670 0.277340161114409 0.276952980190372 0.287081605169834 0.273475323062411 0.28394287109103 0.279965117563985 0.278797215445415 0.273475323062411 0.275203339910563 0.279653094240435 0.276751419348402 0.284786641129351 0.273475323062411 0.27409498329025 0.286483385769398 0.273475323062411 2 2 + 19009145 19009925 19009420.727 19007264 19010476 + gene protein_coding_gene FALSE TRUE AT2G46270.1|AT2G46270.2 GBF3 (G-BOX BINDING FACTOR 3); transcription factor encodes a bZIP G-box binding protein whose expression is induced by ABA. It has been shown to bind to Adh that contains the G-box and is induced by cold and water deprivation. GBF3 has been shown to be expressed mostly in the root and dark-grown leaves. GBF3 can act as homodimers and as heterodimers with GFB1, GBF2 and GBF4. In addition, GBF3??s DNA binding activity is enhanced by GIP1, GPRI1 and GPRI2. Identical to G-box-binding factor 3 (AtbZIP55) (GBF3) [Arabidopsis Thaliana] (GB:P42776); similar to GBF2 (G-BOX BINDING FACTOR 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G01120.1); similar to G-box binding factor (GB:AAA90947.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.313706141559682 3.13118331815559 0.00967628063462087 1 2.83051438570632 8.37733970643492 0.313706141559682 0.097177257593456
AT1G48360_at 3.3697096565174 3.36043424152438 3.68765535754671 3.19311206864984 3.70333333267276 3.31731558418451 2.86958527049853 2.95849709134154 2.82477659963374 3.05750520340017 3.17649590700533 3.52841528679379 3.25574113377811 2.92612132647336 3.42824043965245 3.36385627105536 3.70889107701015 2.84446317052314 2.99389151121396 0.266944643346504 0.256773316340857 0.248922157593609 0.251409442950462 0.256911318560129 0.248443737419468 0.249977236101613 0.255224979234902 0.248443737419468 0.251550130093145 0.248443737419468 0.256398113679021 0.249230361552587 0.257324032503424 0.262351397181436 0.248443737419468 0.252408113406 0.260917591961211 0.248443737419468 1 1 + 17876018 17876530 17876302.7 17872318 17876699 + gene protein_coding_gene FALSE TRUE AT1G48360.1 similar to PREDICTED: hypothetical protein LOC330554 isoform 1 [Mus musculus] (GB:XP_890895.2); similar to Os06g0171800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056937.1); contains domain NTF2-like (SSF54427) 0.328050579623415 3.12967894450775 0.0097021363522176 1 2.82815850546345 6.4263315826765 0.328050579623415 0.109664524984895
AT3G56800_at 11.2368158732660 11.4112011692400 11.3200262056583 11.2897273660972 11.1460486830950 11.1258161702508 10.831374061303 10.9659100045215 10.9352218493065 10.5640182742293 11.2190919807509 11.3233932815201 11.1112711386905 11.1357340152376 11.0019252392127 11.4064409297419 10.9043652220428 10.9086754910632 10.6232820751899 0.0799050916577324 0.077410942934016 0.0776912878799858 0.077410942934016 0.0811720695560034 0.0815564465361063 0.079677463393842 0.0820891632556804 0.0860922644237634 0.0783006262252708 0.078302015810603 0.078511318110419 0.0779828847499424 0.0787954993503793 0.0802980701931168 0.0797806246368461 0.0823516502318927 0.0816753044381842 0.0780087299524502 3 3 - 21046054 21046306 21046175.545 21045640 21047056 - gene protein_coding_gene FALSE TRUE AT3G56800.1 CAM3 (CALMODULIN 3); calcium ion binding encodes a calmodulin Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.263967045949955 3.12946074879946 0.0097058923009696 1 2.82781679988548 22.0827997226079 0.263967045949955 0.0386332766830229
AT1G77660_at 3.15858897899655 3.38037005275617 3.79965009728613 3.62588647181258 3.26690498254918 2.76067232821222 1.93526012307923 2.4213601713066 2.36138186644135 2.37265560242279 2.23845062976234 2.37406047386300 2.33262257764254 2.49880830155790 2.15491343927336 2.14501868627198 2.21478840507840 2.0269914795266 1.79957303222211 0.208621092177716 0.213086176396611 0.204262042088317 0.209105726187001 0.206987330789860 0.202672299261633 0.207500540543900 0.202761366844662 0.204396811106117 0.201120379446078 0.20343351082464 0.200534988144837 0.200534988144837 0.209092710609602 0.204957541363042 0.200534988144837 0.202643524270290 0.202589652960910 0.200534988144837 1 1|0 -|/ 29191024 29191658 29191333.3 29190793 29192719 - gene protein_coding_gene FALSE TRUE AT1G77660.1 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related similar to MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related [Arabidopsis thaliana] (TAIR:AT1G21920.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66263.1); similar to Os09g0453900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063348.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66264.1); contains InterPro domain MORN motif; (InterPro:IPR003409) 0.354860110261827 3.12889439682335 0.00971564817695187 1 2.82692985612747 5.25662510882521 0.354860110261827 0.130876174912377
AT4G38680_at 7.25264126161564 7.3730538131583 7.24201837579047 6.7923757593222 6.3278465536651 7.16071317941579 7.09197248920126 7.88055425797033 7.7989214229769 7.9586758442887 7.39141808272981 7.6710717630482 8.02514772607374 7.29550828573093 7.49309360869121 7.32488023551849 7.4416492033641 7.64547684149961 8.16721269586363 0.136831503579003 0.136247969516034 0.141388551194733 0.142759837678336 0.150943949759925 0.146202168278567 0.138727570510848 0.143209612072404 0.14226354589364 0.140154729368996 0.140379496552223 0.138115233071565 0.134627298240006 0.141440224776065 0.144234330605872 0.138478026197458 0.140104862212766 0.138541794695981 0.137641579937289 4 4 - 18072248 18072801 18072596.273 18071878 18073176 - gene protein_coding_gene FALSE TRUE AT4G38680.1 GRP2 (COLD SHOCK DOMAIN PROTEIN 2); nucleic acid binding encodes a glycine-rich protein that is present as several copies in the genome. It is expressed equally abundantly in all tissues examined. similar to ATGRP2B (GLYCINE-RICH PROTEIN 2B), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G21060.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.478861462241194 -3.12812113254191 0.00972898434188656 1 2.82571885631083 14.8956306476216 -0.478861462241194 0.214211036698807
AT2G19790_at 8.97224481270725 8.83673148399473 8.99744578741914 8.93196082152 8.94010690720613 8.8875705047806 8.64752219927028 8.76966667096777 8.48750865698018 8.49142721155113 8.97339197515999 8.77191285278256 8.57967556489812 8.79800411765233 9.05447249453891 8.8268667913889 8.665071141262 8.97908534457604 8.34135545475757 0.122399886464575 0.117012918313032 0.117672340101180 0.117027804650882 0.111272985734162 0.120664314989146 0.113040732143667 0.118939124169758 0.117172776696771 0.118849787604588 0.119169291798237 0.114348363502191 0.114897269759597 0.120619967975280 0.111773972479313 0.111717760967860 0.117917248860140 0.114800439374640 0.121072402578406 2 2|0 +|/ 8534410 8535433 8534786.8 8534313 8535615 + gene protein_coding_gene FALSE TRUE AT2G19790.1 clathrin adaptor complex small chain family protein similar to clathrin coat assembly protein, putative [Arabidopsis thaliana] (TAIR:AT1G47830.1); similar to Lon (GB:ABE82100.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.261846320507929 3.12740465970751 0.0097413576119152 1 2.82459677838010 17.5084847200059 0.261846320507929 0.0347540509659861
AT1G17970_at 4.20098023098755 4.62343226714158 4.06476243014849 3.79492825628418 5.2515449717816 4.53994297369332 5.5207380780622 5.16928013849458 4.83679811594334 4.90076551450763 6.26691952997583 6.33733647544968 6.60975796117186 6.77384757889873 6.1113398008662 5.9769769711564 5.78353122013562 4.74761475210353 4.70117841132136 0.245088192849285 0.232961982589380 0.246762534107334 0.238472785582240 0.234983129843488 0.245032486325702 0.233673925800950 0.235398931003350 0.233177441500787 0.233668265880313 0.231614356034515 0.234651994429833 0.232060831664340 0.238656688812024 0.230647133372888 0.233127626542046 0.233935609566179 0.230809097965126 0.235900118147664 1 1|0 +|/ 6185543 6187106 6186397.75 6184897 6187465 + gene protein_coding_gene FALSE TRUE AT1G17970.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73760.1); similar to RING-H2 finger protein RHG1a-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82497.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.398594250800521 3.12518923640736 0.00977971832335436 1 2.82112706166349 10.0901159433961 0.398594250800521 0.162448127528826
AT4G23880_at 7.38199657813716 8.03033983083555 8.39254267486931 8.36507851434739 9.49272194149583 9.1011222830025 6.21121566277011 6.91462155185326 5.53636832884093 5.3857743193798 4.51652125068294 4.23284969238602 5.27442519026429 4.52122453630366 3.99575038577672 4.30859648840242 5.69432080477016 4.60221589316148 5.57969883780981 0.2642598386035 0.260543276093524 0.260190505868692 0.267684815790315 0.267064842379286 0.273365262104405 0.261469451047024 0.260906581156301 0.257923297093335 0.263163334221254 0.257923297093335 0.260445975655888 0.26077335696246 0.261909293247570 0.259475671600314 0.258130428223794 0.257923297093335 0.257988019408465 0.27225443645549 4 4 - 12415801 12416373 12416069.636 12415687 12416460 - gene protein_coding_gene FALSE TRUE AT4G23880.1 unknown protein 0.422973574535675 3.12351902653002 0.0098087397106808 1 2.81851112781408 13.0581308091115 0.422973574535675 0.178944998487657
AT3G23070_at 6.49319958790878 6.66391073187508 5.94471900163334 5.5698612400306 7.01418960855274 5.95627577861632 7.19295123969222 7.10044833893907 5.86615741366048 6.74427790462287 6.11681627014435 6.66026815798427 6.37805478874102 6.43980320174925 6.58362939162711 6.72831569263996 5.7915767714617 5.85045560920554 6.82682868424261 0.166682050307689 0.166709191220206 0.181354803649036 0.17193799260616 0.165284730867664 0.179032243406412 0.163872044524167 0.163872044524167 0.188141190840836 0.168774743368200 0.167178133880562 0.167434448487118 0.166459849799418 0.165665392217021 0.172698100573353 0.165174680624357 0.176921535534366 0.169999844156549 0.169952795742836 3 3|0 +|/ 8206386 8207225 8206675.5 8203476 8207426 + gene protein_coding_gene FALSE TRUE AT3G23070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14510.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to Os11g0592400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068192.1); similar to CRS1/YhbY domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94534.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890); contains InterPro domain Calycin-like; (InterPro:IPR011038) -0.450919541396685 -3.12286418118682 0.00982014204106318 1 2.81748546318467 12.8907959340491 -0.450919541396685 0.197115194645926
AT4G29440_at 4.82972162687467 5.17332107138215 4.46495130559049 4.64286340331477 4.49304119462828 4.74836055849316 4.48811137025705 4.90995926207307 5.51109138992309 5.23595732712645 4.89529469787662 5.17536523232882 4.98234596613869 4.90443749197309 4.78067043014649 4.84762146472729 4.50480617550027 5.14073206984228 5.13051251606811 0.192170364756438 0.199575341804371 0.230821930365753 0.218920707777361 0.202112868104709 0.206234052939594 0.195344513929058 0.197553209906204 0.201900439005181 0.205079863904410 0.192940048737067 0.196429918628901 0.198837840192294 0.19974141899458 0.196125591941032 0.20140640118814 0.201597645665137 0.197136338113969 0.205513312446508 4 4 - 14473956 14474494 14474178.455 14473763 14477941 - gene protein_coding_gene FALSE TRUE AT4G29440.1|AT4G29440.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19710.1); similar to MAPK activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82253.1); similar to Os01g0706400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044016.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) -0.325792718556293 -3.12180231725984 0.00983866004265857 1 2.81582226684766 9.81700602512966 -0.325792718556293 0.108467719288648
AT2G43590_at 2.45521741651981 2.62205654786526 1.99075948525989 2.13384667888741 1.13978824540378 1.80708254607509 1.68168788875132 2.13414066372466 2.00099018053653 1.92296446998513 1.50599629693315 1.48517595216563 2.02427666514171 1.57755566615715 1.77152822559103 1.74678947876195 1.73447087830609 1.8013625812918 2.06342900729865 0.202769727561830 0.207952601822933 0.200772544788343 0.207225983280539 0.202465262444652 0.199298786399159 0.200743803717251 0.199298786399159 0.202969073332021 0.208269116988779 0.201691866310534 0.204773428098833 0.210835532928824 0.205407175550508 0.208604901792692 0.199298786399159 0.214155347253764 0.200842599122031 0.203769882836483 2 2 - 18088681 18089607 18089119.364 18088408 18089841 - gene protein_coding_gene FALSE TRUE AT2G43590.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43580.1); similar to Basic endochitinase CHB4 precursor (GB:Q06209); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.372653237435966 -3.12132756437138 0.00984695077348389 1 2.81507864966729 3.84641694438607 -0.372653237435966 0.144612458376587
AT2G46220_at 11.7547042412413 12.2011136241804 11.7821276494830 11.7823058162006 12.2056027002757 12.0695805943544 12.3460510050371 12.5923341100712 12.2941559812807 12.6110675007482 12.1727700058997 12.1241821355009 12.2058067157480 12.1002958069585 11.7081122953382 12.1487227452125 11.9943221404990 12.2826879960146 12.4177550303912 0.109274566364864 0.101709981711656 0.107481413322398 0.108344762790960 0.101709981711656 0.103491758810497 0.101709981711656 0.102587036118409 0.114042791476271 0.101709981711656 0.103437224902532 0.101709981711656 0.101709981711656 0.108377827061183 0.101824005529735 0.101709981711656 0.108597742438377 0.104775158947179 0.102094654747385 2 2 + 18986888 18987599 18987313.182 18986544 18987843 + gene protein_coding_gene FALSE TRUE AT2G46220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16320.1); similar to hypothetical protein Npun02005080 [Nostoc punctiforme PCC 73102] (GB:ZP_00108317.1); similar to Os05g0215600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054933.1); similar to Os04g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053853.1); contains domain NTF2-like (SSF54427) -0.306263456190492 -3.12067888973862 0.00985829019199627 1 2.81406260238622 24.3582801264154 -0.306263456190492 0.0913162662568316
AT2G33440_at 6.63501210709892 6.20791796485309 6.01605041716775 5.60183347727715 6.67631149140595 6.37752925192798 6.31309859150477 5.91611461087066 5.2768332649406 4.92990568453729 4.60602387661797 4.349411578825 4.58030411145468 4.90977101785549 4.31095241131824 4.95507463737044 4.5368234805347 4.3271542663644 5.35829776022714 0.212796623739385 0.217079530795113 0.209380401866593 0.211842702779165 0.209380401866593 0.225589807231756 0.211255612348538 0.227223248619153 0.225435920726683 0.210608153097225 0.209380401866593 0.215072557028414 0.221229854246161 0.211703395982065 0.212781398809031 0.209380401866593 0.226125149633999 0.213109054865892 0.209380401866593 2 2|0 +|/ 14178817 14180204 14179410.222 14177716 14180513 + gene protein_coding_gene FALSE TRUE AT2G33440.1 splicing factor family protein similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93875.1); similar to Os01g0956600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045441.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.358255403248105 -3.12046547584274 0.00986202375216236 1 2.81372831985592 11.0981259852354 -0.358255403248105 0.134142727083772
AT1G02300_at 9.96200108856634 9.64534384767173 10.3144476282279 10.0300185048304 10.6519310238053 10.2303551967584 9.70381293292825 9.35311049392604 9.545743983186 9.45073914293921 9.55298106035618 9.21619045251965 9.49301119610357 9.72784919835599 8.9772939240221 9.62393612924614 9.76125879234872 9.59811995949904 9.36693565426758 0.0935652734023364 0.0915886573825783 0.095836540792046 0.0923469362532519 0.0915886573825783 0.0965201917051655 0.094407928375255 0.0925755724006266 0.100694191339063 0.0915886573825783 0.096380338374447 0.0954643257173552 0.0926615454011495 0.100165987257357 0.093531097703461 0.0937501671627664 0.0983829568012354 0.0936729438794541 0.0915886573825783 1 1|0 +|/ 454452 454984 454665.556 453288 455463 + gene protein_coding_gene FALSE TRUE AT1G02300.1 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02305.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32839.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1, propeptide; (InterPro:IPR012599); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.339989079945608 3.12044223313838 0.0098624304571709 1 2.81369191337207 19.4605290975163 0.339989079945608 0.120131615115295
AT3G02875_at 3.58119480350757 4.04313443918981 3.9166569880751 3.85561381164039 4.27078747598101 4.009344501101 3.06375345282339 3.59224813449122 2.59184393924422 2.91480114286932 2.98640543145479 3.32119402655378 2.97253774920521 2.899440065939 2.49605695985282 3.29405873251564 3.31899739622211 2.90960462011224 2.77992424028611 0.266668333071632 0.268997125841146 0.261686221297331 0.269919217034298 0.266006629348253 0.261182044951101 0.25858603584358 0.261542452392367 0.265869110190447 0.25858603584358 0.25858603584358 0.25858603584358 0.262285824480711 0.25858603584358 0.259678724952439 0.25858603584358 0.263041080194021 0.267442537586976 0.261741358765292 3 3 + 633119 633795 633583.364 631920 634081 + gene protein_coding_gene FALSE TRUE AT3G02875.1 ILR1 (IAA-LEUCINE RESISTANT 1); metallopeptidase Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors. Identical to IAA-amino acid hydrolase ILR1 precursor (EC 3.5.1.-) (ILR1) [Arabidopsis Thaliana] (GB:P54968;GB:Q9M8S9); similar to ILL6 (IAA-leucine resistant (ILR)-like gene 6), metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G44350.1); similar to ILL2 (IAA-leucine resistant (ILR)-like gene 2), metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G56660.1); similar to IAR3 (IAA-ALANINE RESISTANT 3), metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G51760.1); similar to ILR1 (GB:AAB60293.1); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain Peptidase dimerisation; (InterPro:IPR011650); contains InterPro domain Peptidase M20D, amidohydrolase; (InterPro:IPR010168) 0.352807542647556 3.12038811815279 0.00986337743675226 1 2.8136071496571 6.68508002428377 0.352807542647556 0.130053032770438
AT1G14980_at 9.3980466827525 9.54412485462384 9.59750353265604 9.64163800869943 9.13764996145922 8.97522949426532 9.95454414173159 9.92751059880546 8.9446497280013 9.29280787157854 8.93186275387279 9.15501143631597 8.65969220918318 8.64838881741318 9.43006176480088 8.75531438929526 9.0217178402629 8.9609289173126 9.07349298462545 0.088276814661809 0.0836750696078685 0.0868478947569619 0.0844964665621258 0.082343180976202 0.085895138529794 0.0845323878740677 0.0842156602230422 0.0879633288787488 0.0863073428526644 0.082654262824944 0.0871102290451783 0.0892982577550206 0.0929925031825627 0.088548797215249 0.0830487057346003 0.0927472514176205 0.091648646270632 0.0863177549585595 1 1|0 -|/ 5165947 5166624 5166423.444 5165623 5166740 - gene protein_coding_gene FALSE TRUE AT1G14980.1 CPN10 (CHAPERONIN 10) Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. Identical to 10 kDa chaperonin (Protein CPN10) (Protein groES) (CPN10) [Arabidopsis Thaliana] (GB:P34893;GB:Q96249); similar to 10 kDa chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G23100.1); similar to 10 kDa chaperonin (Protein CPN10) (Protein groES) (GB:Q96539); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains InterPro domain GroES-like; (InterPro:IPR011032) -0.263164624443176 -3.11859585220085 0.00989479312930475 1 2.81079975562065 18.5465421397703 -0.263164624443176 0.038849868153014
AT4G17600_at 10.3886440716 10.6472092473867 9.86396456989704 9.93967202501821 10.5286813029085 10.2017985938086 10.8694733408008 11.1115932633109 11.1191939640246 11.2016794876633 11.2401724594424 11.4635044042388 11.0029399446523 11.2644996594363 11.3606700268590 11.2442419647814 10.6693734133372 11.1700625771962 11.1409383398389 0.0861602552417347 0.082346105446803 0.0842692034733891 0.0870668933424565 0.0830613395773143 0.085200889656621 0.0858836167312444 0.0824936513903519 0.0967628362156717 0.0837497109279694 0.082186848710809 0.0820398238687021 0.0841756644144645 0.0858329436099592 0.0835674774579468 0.0820398238687021 0.0894562514653637 0.0831381368398114 0.082514338103902 4 4|0 +|/ 9803965 9804584 9804313 9803718 9804859 + gene protein_coding_gene FALSE TRUE AT4G17600.1 LIL3:1; transcription factor Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1. similar to lil3 protein, putative [Arabidopsis thaliana] (TAIR:AT5G47110.1); similar to Lil3 protein, putative [Brassica oleracea] (GB:ABD64919.1) -0.298852532732908 -3.11796552420283 0.00990586590535247 1 2.80981238864904 21.609314711884 -0.298852532732908 0.0844361230714614
AT1G46768_at 3.92108171873616 3.79794289511367 4.49242379337265 4.21630336157664 4.64163210982783 4.64611704043 3.86727036030654 4.3603709372219 4.06709199413039 3.48620766191588 3.79780054393876 3.76264701792872 3.91987654166119 3.67409034053022 3.9357374619216 3.87940473710151 3.90574765209223 3.61699284871766 3.52545761015454 0.257566991759108 0.254376977824544 0.250280973076512 0.255362126242017 0.261322968798836 0.258861150506992 0.247077195499512 0.248813047062326 0.247600168991363 0.245552847312092 0.248726780533861 0.245581116813155 0.244353715236365 0.244353715236365 0.250159961421918 0.248403666318375 0.250670285088677 0.263309288149557 0.256285755472773 1 1 - 17268497 17268888 17268700.7 17268141 17268976 - gene protein_coding_gene FALSE TRUE AT1G46768.1 RAP2.1 (related to AP2 1); DNA binding / transcription factor encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. similar to RAP2.10 (related to AP2 10), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36900.1); similar to dehydration responsive element binding protein [Gossypium hirsutum] (GB:AAQ08000.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.315535326355049 3.11671777360989 0.00992782179545933 1 2.80785783177739 7.99512089293322 0.315535326355049 0.100098915888051
AT3G26090_at 7.30186570642078 7.34535221150458 6.87585454133048 6.7783601398145 6.98188597415548 6.25880151522119 4.80729855723182 5.38051185872391 4.91105192634527 4.76548382285267 4.89778664933508 5.16511573112208 4.55924156214263 5.58495316092947 4.44187085034355 5.4946846525507 5.11601428635158 4.91454519947001 4.56388461310093 0.262199362242929 0.254785454332551 0.267422941214101 0.258027611659664 0.254406409876347 0.273710713531366 0.254406409876347 0.257195957041136 0.263681057152603 0.255282459137708 0.257502721519899 0.254406409876347 0.257602876405535 0.256531526599950 0.260000417093774 0.254406409876347 0.255634490647075 0.268329543399596 0.254406409876347 3 0|3 /|+ 9536266 9536623 9536472.1 9533985 9536866 + gene protein_coding_gene FALSE TRUE AT3G26090.1 RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); signal transducer encodes a regulator of G-protein signaling protein. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA. similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84627.1); contains InterPro domain Regulator of G protein signalling; (InterPro:IPR000342) 0.39496909162891 3.11618189946572 0.00993726636961613 1 2.80701838842806 11.3505329625321 0.39496909162891 0.160747277301882
AT4G28600_at 6.66936044597352 6.56328826031579 6.40664943907636 6.23579497371443 6.06032623463302 6.41054871239955 5.3626803573722 6.40654585686516 6.15835664109705 6.07303400873217 7.1570897834902 7.1260665326183 7.3671587597343 7.14855201543437 6.68807891770888 7.04895721608387 6.76405437737823 5.90595648183353 5.88722058973981 0.182259528525055 0.182259528525055 0.186628796851564 0.202878201385714 0.193704931279936 0.182259528525055 0.194586660470226 0.190075463602619 0.193781609018199 0.198725712176577 0.186029567253994 0.18748639899414 0.184712022715543 0.194631444020783 0.189749561450183 0.189150231164553 0.189401072939973 0.186330214897984 0.186015868673508 4 4 + 14131870 14132553 14132283.182 14129421 14132805 + gene protein_coding_gene FALSE TRUE AT4G28600.1 NPGR2 (NO POLLEN GERMINATION RELATED 2); calmodulin binding encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. similar to NPG1 (NO POLLEN GERMINATION 1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G43040.1); similar to Os03g0138000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048906.1); similar to Os10g0471400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064828.1); similar to calmodulin-binding protein MPCBP [Zea mays] (GB:AAG12459.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.44453164525152 3.11556722518990 0.00994811097688605 1 2.80605549370798 12.7345374552395 0.44453164525152 0.193693980486757
AT1G73980_at 8.79167506898158 8.51692810234612 9.0552856497963 8.5401921172577 8.99612718751265 8.85658484782004 8.01364281637797 7.73226861358904 7.00355617634202 8.13687084770192 7.7175165830549 7.67952096842099 7.93318167646744 7.70425835237897 7.31488211512932 8.0392269380999 8.29462491510266 7.73278683640241 8.0647363161257 0.20377074696282 0.206791154060424 0.204115376813113 0.207567433835431 0.205045742179577 0.2135542565903 0.201208694914048 0.208991341395130 0.250365363809446 0.210444454903532 0.211050723689129 0.201786095686947 0.210248716419418 0.217676285136986 0.205446640763721 0.201425179027234 0.210918141572145 0.213090803638413 0.206883764128630 1 0|1 /|- 27823966 27824741 27824204.778 27823810 27827697 - gene protein_coding_gene FALSE TRUE AT1G73980.1 phosphoribulokinase/uridine kinase family protein similar to phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26190.1); similar to putative uridine kinase [Oryza sativa (japonica cultivar-group)] (GB:AAL87159.1); similar to Os02g0708200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047881.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172) 0.332682075840929 3.11529810173558 0.00995286285594272 1 2.80563390469742 16.3313651728878 0.332682075840929 0.114719808338161
AT2G05620_at 10.7611175184228 10.8285001193786 10.7763718636994 10.7393256699747 11.0789011846673 10.8839674923411 11.6710413314479 11.6541423443634 11.2724715457882 11.7027650916315 11.5083987337654 11.5399829751285 11.3075893257838 11.4555472767304 11.1319519678706 11.6840818515115 11.2437550110413 11.4360371600937 11.7563797065716 0.0923439006448247 0.0891638895939266 0.0890735484527992 0.0939018734622276 0.0915034717395555 0.0910778158388111 0.0913322845157419 0.0966176259547336 0.107962775592302 0.0926412484168104 0.0907054091647213 0.0890735484527992 0.0907469682575407 0.095715425486485 0.100434407304410 0.0890735484527992 0.0952143305082122 0.0919394949291097 0.0894099879876513 2 2|0 -|/ 2081235 2081594 2081451.8 2081050 2081855 - gene protein_coding_gene FALSE TRUE AT2G05620.1 PGR5 (PROTON GRADIENT REGULATION 5) Involved in electron flow in Photosystem I. Essential for photoprotection. similar to PGR5 [Amaranthus hybridus] (GB:BAE00072.1) -0.261423092994498 -3.11291401573829 0.00999505891925844 1 2.80189906916728 22.5444826834058 -0.261423092994498 0.036381653487245
AT3G45210_at 8.65115037891002 8.99470351042272 9.5929140079727 9.72142721021252 9.73647397986809 9.62283761210197 10.1993379392552 10.0247564164695 8.82221632024692 9.36602635368903 9.63734179642274 9.4685335809482 9.2584558417924 9.5572793547807 9.1509360631732 9.66724858085121 9.97075408518345 9.47966721140986 9.261528908418 0.0972309444456861 0.0937725557625673 0.0937725557625673 0.0937725557625673 0.0950633933172544 0.0949514015640638 0.0950612649625796 0.103102131596904 0.108923234166052 0.0979440527506442 0.095241477021513 0.0952295732968346 0.097194821285217 0.096836934412157 0.0956598614599704 0.0942041883046775 0.0962905020083343 0.103095517633900 0.0981386391336845 3 3 - 16568547 16568842 16568725.818 16568258 16568955 - gene protein_coding_gene FALSE TRUE AT3G45210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60680.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.287389672405011 3.11260137951185 0.0100006057104942 1 2.80140928942205 18.9048005944540 0.287389672405011 0.0729987833310889
ATCG00040_at 11.0189669579234 11.6280518364317 11.0638447264126 11.1517626710675 10.8463507269888 10.4260627567860 11.3192540453767 11.4061637991195 12.3261890189186 12.4219156683126 12.2035328383398 12.7450887786923 11.999616023672 11.9405896753737 12.0246722360077 12.1246769859251 11.3878163898186 12.0670739605892 12.1333503960439 0.136000981826672 0.132936433475195 0.139893036197981 0.139715269246563 0.135903015244204 0.137635182120219 0.131419397369800 0.135003675478989 0.139812484376533 0.135737570815808 0.133797336210639 0.134529659777554 0.144868443729643 0.141198904839303 0.150024691894176 0.13101529075217 0.134098396058351 0.142601980160601 0.139853115532843 C C - 2151 2625 2384.455 2056 3636 - gene protein_coding_gene FALSE TRUE ATCG00040.1 Encodes a maturase located in the trnK intron in the chloroplast genome. Identical to Maturase K (Intron maturase) (matK) [Arabidopsis Thaliana] (GB:P56784;GB:Q9G1K9;GB:Q9G227;GB:Q9GF24;GB:Q9GF25); similar to maturase K [Brassica rapa] (GB:AAS48152.1); similar to maturase K [Brassica hilarionis] (GB:AAS48145.1); similar to maturase K [Brassica rupestris] (GB:AAS48153.1); contains InterPro domain Agglutinin; (InterPro:IPR008998); contains InterPro domain Maturase-related, N-terminal; (InterPro:IPR002866); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) -0.351644469719243 -3.11260104453411 0.0100006116553407 1 2.80140876464015 23.2852830510853 -0.351644469719243 0.129838202902425
AT1G12960_at 2.07828521043345 2.21233457334524 2.14580588879507 2.09834740302742 2.03847465371047 1.75211682290640 2.43129800299365 2.64567633028508 2.08638309734379 2.3934995619056 1.88188780152517 1.82561351414982 2.25186694230764 1.89358589575892 2.13159200722516 1.69482375022727 2.03954951884863 2.16891701951707 2.16925111742335 0.181546185975089 0.178482014556948 0.186541460479139 0.191168277163138 0.178482014556948 0.190076424062164 0.182744687601687 0.183682750785388 0.183444954741814 0.182145951733543 0.181191427187637 0.186448314428557 0.183541330697907 0.187035300725712 0.185920000607884 0.180717771870435 0.188442702967998 0.179718791269354 0.181710429970282 1 1|0 -|/ 4422706 4423093 4422913.75 4422705 4423153 - gene protein_coding_gene FALSE TRUE AT1G12960.1 60S ribosomal protein L27A (RPL27aA) Identical to Putative 60S ribosomal protein L27a-1 (RPL27AA) [Arabidopsis Thaliana] (GB:Q9LPV3); similar to 60S ribosomal protein L27A (RPL27aC) [Arabidopsis thaliana] (TAIR:AT1G70600.1); similar to 60S ribosomal protein L27a [Panax (GB:BAA96068.1); contains InterPro domain Ribosomal protein L15; (InterPro:IPR001196) -0.281805353258564 -3.1125070383056 0.0100022801244143 1 2.80126149272102 4.27647110156337 -0.281805353258564 0.0666160242840029
AT3G06370_at 1.87578401580550 1.72918344990659 2.38516262322666 2.16565639775787 1.83922112879478 2.02855803136611 2.03209786461113 1.57941142329369 1.72286044441492 1.84144458880179 2.23348838642331 2.08213968881484 2.22280295745454 2.04660563354690 2.81910094014230 1.94423954501446 2.27009907513868 1.80291863785802 2.00438870263701 0.236690174527982 0.236690174527982 0.239264211853002 0.242859657583721 0.24051351838784 0.248357417666032 0.248733754780589 0.236690174527982 0.244702877311913 0.245003514951114 0.236690174527982 0.239778175882948 0.249078797973813 0.257374142939889 0.238817306511864 0.236690174527982 0.236690174527982 0.249759369660524 0.241558932016586 3 3 - 1931056 1931512 1931260.375 1930402 1934079 - gene protein_coding_gene FALSE TRUE AT3G06370.1 NHX4 (sodium proton exchanger 4); sodium:hydrogen antiporter member of Sodium proton exchanger family Identical to Sodium/hydrogen exchanger 3 (Na(+)/H(+) exchanger 3) (NHE-3) (NHX3) [Arabidopsis Thaliana] (GB:Q84WG1;GB:Q9SQU0); similar to NHX2 (sodium proton exchanger 2), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT3G05030.1); similar to NHX1 (NA+/H+ EXCHANGER), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G27150.1); similar to Na+/H+ antiporter [Glycine max] (GB:AAY43006.1); similar to Na H-antiportor [Petunia x hybrida] (GB:BAB56105.1); similar to Na H-antiportor [Nierember (GB:BAB56106.1); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.310986734823343 3.11238047437404 0.0100045268891592 1 2.80106321485065 3.97133716851214 0.310986734823343 0.096422385350807
AT3G57520_at 7.06844047633989 7.37795630853737 7.90415722779736 8.12435255299448 8.40756796913407 8.18171662077004 7.89478355486055 8.00254883601084 3.47390757625096 5.89102997037732 4.07196241517209 3.41582769266549 6.60897220392014 5.19853563297543 3.27137315130076 5.03056802171357 7.34081876033864 4.23728803686541 5.27544052915513 0.2360425723569 0.236030749380062 0.234524490676172 0.234524490676172 0.237726160597091 0.237620217291932 0.235227956106581 0.234524490676172 0.260841939457837 0.238132065686617 0.234524490676172 0.237383621485727 0.234524490676172 0.245034393238769 0.248876181091722 0.239530954632162 0.259705508742689 0.237916109447588 0.241978698702930 3 3 - 21300002 21300692 21300284.909 21299742 21304135 - gene protein_coding_gene FALSE TRUE AT3G57520.1|AT3G57520.2|AT3G57520.3 ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DIN10 (DARK INDUCIBLE 10), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G20250.3); similar to putative imbibition protein [Brassica oleracea] (GB:CAA55893.1); similar to alkaline alpha galactosidase [Cucumis sativus] (GB:ABD52008.2); similar to alkaline alpha galactosidase II [Cucumis melo] (GB:AAM75140.1); contains InterPro domain Glycoside hydrolase, clan GH-D; (InterPro:IPR000111); contains InterPro domain Raffinose synthase; (InterPro:IPR008811) 0.292654256422311 3.11193945717250 0.0100123598285683 1 2.80037230352092 12.7587125756206 0.292654256422311 0.078717660662809
AT2G01460_at 3.7228704861746 3.82701241909935 3.96420113812497 4.22585923468624 4.80412852933102 3.69222975194666 3.81781116989801 3.58462302937973 2.55062222595253 3.06074704990704 3.21413805720424 3.26636964415973 3.57070094588009 3.12465417075257 2.89890530314175 3.66864922288962 3.30858430845847 3.34500028650952 2.84149502428233 0.250916630906229 0.253297855717277 0.245959588678588 0.254851987631663 0.24832456150679 0.2675024378848 0.243686520221692 0.243686520221692 0.24921863993947 0.243686520221692 0.244223112243285 0.24496835866252 0.248648849685131 0.244861870262235 0.243686520221692 0.247908007578060 0.276208530018961 0.255435291636792 0.246125735717907 2 2|0 +|/ 209333 210935 210032.333 206135 210974 + gene protein_coding_gene FALSE TRUE AT2G01460.1 phosphoribulokinase/uridine kinase family protein similar to phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26190.1); similar to uridine kinase [Dictyostelium discoideum AX4] (GB:XP_639121.1); similar to OSJNBa0079F16.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE05128.3); similar to Os04g0280200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052362.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764) 0.457764598189082 3.11119108798472 0.0100256658889951 1 2.7991998708767 7.01346530770764 0.457764598189082 0.202555741876237
AT3G15430_at 8.44586283954654 8.88857090251047 8.84447760428438 8.74398861654267 8.88562595358976 8.40711347034162 8.21839594872674 8.29651148386935 7.83327689583035 6.90824225212036 7.73342458249349 7.77889531511198 7.9024182466768 8.13626493477875 7.17478665645413 7.98400151318534 7.74131466467594 7.98798466347366 7.45218804074509 0.182435897888551 0.179130488158290 0.190381956921546 0.184398362715825 0.178309692444862 0.188672226941604 0.180462546933323 0.175675351498856 0.184846369855385 0.20240761031257 0.178917522682759 0.175763008299055 0.185827899458939 0.188706913761050 0.183163612999544 0.182395597099880 0.194596205433562 0.184476313444896 0.184981644366595 3 3|0 +|/ 5210581 5211516 5211027.8 5208745 5211752 + gene protein_coding_gene FALSE TRUE AT3G15430.1|AT3G15430.2 regulator of chromosome condensation (RCC1) family protein similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G26100.2); similar to Os12g0284000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066582.1); similar to regulator of chromosome condensation, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97468.1); similar to Os07g0459400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059575.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) 0.332475021700336 3.11078672809907 0.0100328628914931 1 2.79856637307715 16.1927127115955 0.332475021700336 0.114943306223925
AT1G56620_at 1.54990921363543 1.44852649253601 0.920376196742852 1.41275712962257 1.23685563395723 1.46194024570464 1.35363022897797 1.53345820433749 1.79029447620565 2.25645581192600 1.72646383542850 1.46596851289098 1.6582792473461 1.44090572373445 1.54989259819387 1.49273191453361 1.65097039650008 1.72491324484901 1.97007393413739 0.197345748323907 0.196011681657568 0.200070111696878 0.204056513599959 0.197791406992215 0.200400516034665 0.202040052575276 0.199383066904950 0.205065089332925 0.201867822765057 0.196450047555388 0.201223118080581 0.206647162242966 0.195678010850738 0.198031375591940 0.194811829963375 0.202808055720508 0.201846053750040 0.201769754910438 1 1 + 21223521 21223989 21223748.909 21223483 21224022 + gene protein_coding_gene FALSE TRUE AT1G56620.1 pectinesterase inhibitor domain-containing protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT5G24370.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.315120561635003 -3.11070918222574 0.0100342436902970 1 2.79844488383033 3.1618685473264 -0.315120561635003 0.100270002124949
AT1G10670_at 9.5458884519674 9.69182738416048 9.24638620622756 9.35555203346133 9.59211191095243 9.39366516398865 10.1662076599792 10.1613078001379 10.7390716130844 10.5310664576902 10.8838612651896 10.8416264161212 10.4013544010223 10.7567827798544 10.6852893244155 10.3479572962404 9.82531630256475 10.6776562687726 10.5059223783256 0.115434629209282 0.113976893475788 0.119677897728903 0.116412875595982 0.112353186692747 0.118633089943333 0.110191970372916 0.110845386118234 0.116152890135153 0.107939046484206 0.108697927113352 0.115744949058157 0.109751911910197 0.116855888138971 0.109127927626818 0.110508535156044 0.115256599644117 0.111621091733206 0.110441862814462 1 1|0 +|/ 3537202 3538025 3537704.4 3535388 3538282 + gene protein_coding_gene FALSE TRUE AT1G10670.1|AT1G10670.2 ACLA-1 (ATP-citrate lyase A-1) One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress. similar to ACLA-3 (ATP-citrate lyase A-3) [Arabidopsis thaliana] (TAIR:AT1G09430.1); similar to ACLA-2 (ATP-citrate lyase A-2) [Arabidopsis thaliana] (TAIR:AT1G60810.1); similar to ATP citrate synthase, small subunit [Medicago truncatula] (GB:ABE86911.1); similar to Os11g0696200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068510.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP citrate synthase, small subunit; (InterPro:IPR012250) -0.266959319165606 -3.11058110972062 0.0100365245989201 1 2.79824423531584 20.2163686545957 -0.266959319165606 0.0466350916910638
AT2G36485_at 3.62097409106684 3.35546178810765 3.63693179077676 3.34133643380396 3.55926577496284 3.52381678167641 3.34007509570734 3.30537646452681 2.81829710741227 2.52186855206590 3.06432024020672 2.99252014624859 3.31557613675451 3.16852272334067 3.27741479723359 2.76166509114319 2.86887958229415 3.12543628507624 2.50139597244628 0.224726794558026 0.222362346961358 0.219005651785211 0.224922052570575 0.222875983320697 0.238991643763296 0.223913866780518 0.222236243506089 0.221608935746224 0.223107830439326 0.21969671039255 0.233731710347824 0.228897901432568 0.227146915029563 0.222802899869204 0.220995466817911 0.222287055057194 0.222155995243248 0.226621935431054 2 2 - 15314188 15314589 15314399.273 15314033 15314873 - gene protein_coding_gene FALSE TRUE AT2G36485.1 similar to pre-mRNA cleavage complex-related [Arabidopsis thaliana] (TAIR:AT4G04885.1); similar to putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa (japonica cultivar-group)] (GB:BAD46662.1); similar to Os09g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063953.1); contains domain SUBFAMILY NOT NAMED (PTHR15921:SF6); contains domain FAMILY NOT NAMED (PTHR15921) 0.283901916715946 3.11038185351051 0.0100400742987928 1 2.79793206375542 6.30322765387626 0.283901916715946 0.0692940834133316
AT3G11690_at 3.55417831952128 4.75804242862162 5.72377156367285 6.40230682752465 7.93452862170295 7.0709981593045 7.73827533034524 7.94733218722382 7.21393569383937 6.96691702736582 8.17455514661356 6.86994398097491 8.32245715578957 8.27105143305252 5.84173014325128 7.92404303278124 7.99969936666758 7.53295857864895 7.46635016924563 0.250453385787193 0.248028343251253 0.257417964394904 0.238217738364028 0.227215449279056 0.248591220073631 0.237085105347033 0.228919275051765 0.238732849111166 0.233375202915848 0.227215449279056 0.232475921606441 0.227878360665213 0.245075306497511 0.251415909822936 0.230206106791800 0.244440896882330 0.228453984608285 0.229718873939642 3 3 + 3695730 3696215 3695937.182 3694994 3696484 + gene protein_coding_gene FALSE TRUE AT3G11690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06380.1); similar to pollen preferential protein [Lilium lon (GB:CAA78966.1); contains domain Thiolase-like (SSF53901) 0.592382392264379 3.11002841477491 0.0100463738510646 1 2.79737833380082 13.8075737555093 0.592382392264379 0.284309827940642
AT3G43860_at 1.40969894517010 1.60751864869541 0.948886537079255 1.26249218496586 1.22523401425665 1.60738981898894 1.17501342381163 1.06915945556945 2.34036819640056 1.66667409929782 2.0987260195722 0.9413144319682 1.37819411406093 1.32699465206361 1.63658375849643 1.20643048289604 1.56146465301249 0.716077524105333 1.75261208274843 0.205001840766862 0.214751599571779 0.214765718914225 0.202179204624892 0.204334549370759 0.209100400424868 0.205379557531460 0.21267799281555 0.216484919933208 0.20514548785326 0.211905308979486 0.209524085130754 0.206534596279493 0.204106023401500 0.205343881760642 0.203698137902907 0.206796316227255 0.210454047617933 0.207598441115235 3 3|0 +|/ 15719646 15720371 15720050.9 15717981 15720776 + gene protein_coding_gene FALSE TRUE AT3G43860.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 16 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 16) [Arabidopsis Thaliana] (GB:Q8VYG3;GB:Q9LZG2); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT4G09740.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT4G02290.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT4G23560.1); similar to Os02g0778600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048297.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE81742.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -0.308004283891339 -3.10959922607234 0.0100540289242945 1 2.79670592165277 2.92722812723592 -0.308004283891339 0.0939495997486101
AT1G45230_at 6.23335853298535 6.42471570718489 5.63519125922947 5.94067786177162 6.26673464751909 6.15305375190787 6.41965573581744 7.21672731546774 5.89217191582725 5.83637209866138 5.266356942969 5.35231910547737 6.00684436375569 5.84067724531021 5.51426869635767 5.66473797944231 5.78828238440063 5.63383001024531 5.74258997502203 0.196249287173450 0.189471222318960 0.197818009415365 0.192188046622012 0.188169705381031 0.19264328659431 0.190603091575810 0.190552672524405 0.189459850534504 0.188169705381031 0.1959321047883 0.190716909699615 0.188169705381031 0.191092621874511 0.191584875959192 0.190610357219696 0.190076200560006 0.192181532246283 0.190634378359672 1 1 - 17172333 17173704 17173238.273 17171977 17173912 - gene protein_coding_gene FALSE TRUE AT1G45230.1|AT1G45230.2 defective chloroplasts and leaves protein-related / DCL protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G46630.1); similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein) (GB:Q42463) -0.382498340799479 -3.10930680215405 0.0100592480247805 1 2.79624777629923 12.0148273119013 -0.382498340799479 0.152659922447989
AT3G24810_at 1.52976123143209 1.56002668559452 1.72806742561347 1.85374281247694 1.51472656450761 1.59815097078120 1.36897561318473 1.62919730796558 0.876108349148502 1.14414694203157 1.58624114676776 1.44624799102145 1.51348722581007 1.44118841644856 1.71044990635850 1.82537851749369 1.81668125699670 1.22835172016962 1.52470064621556 0.197811665634995 0.199432053274198 0.196892051186853 0.196578914152879 0.196199930244623 0.198998441637698 0.200424920454959 0.196199930244623 0.202492533366643 0.203302974769143 0.203487284285537 0.201012120039373 0.208898690120509 0.198885000763487 0.198584639104506 0.196477574915020 0.196199930244623 0.197224787138879 0.196942945534375 3 3 + 9061013 9061706 9061346.545 9060903 9062005 + gene protein_coding_gene FALSE TRUE AT3G24810.1 ICK3 (kip-related protein 5); cyclin-dependent protein kinase inhibitor Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. similar to ICK6 (KIP-RELATED PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT5G48820.1); similar to cyclin dependent kinase inhibitor [Euphorbia esula] (GB:AAV76001.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) 0.270516513650997 3.10873498265494 0.0100694616313202 1 2.79535188960201 2.9741587023271 0.270516513650997 0.052314417020332
AT2G46900_at 7.85205239596661 8.2709718143196 7.39096315261456 7.69177837174343 7.97960096169467 7.85063984033458 7.22308578416186 7.05635469513448 7.76083584795014 8.02065197469386 7.73693498883515 7.36082243072417 7.22437897703974 7.21511494159167 7.13058826411577 7.2921824773376 7.10419607956845 7.37683675860382 8.38024824173922 0.190961513526634 0.194759362872456 0.185733495897545 0.192440822279277 0.199595209818679 0.196595671036418 0.185545651671650 0.185785688233199 0.199715433835869 0.188884421192447 0.207471600023136 0.185505189203256 0.185505189203256 0.194050690736226 0.197923510002345 0.189564324590369 0.196279688856357 0.200025195021342 0.185540460080513 2 2|0 +|/ 19278394 19279012 19278747.6 19276627 19279236 + gene protein_coding_gene FALSE TRUE AT2G46900.1 similar to PREDICTED: similar to CG7927-PA [Tribolium castaneum] (GB:XP_973489.1); similar to Os09g0514900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063663.1); contains InterPro domain Protein of unknown function DUF654; (InterPro:IPR006994); contains InterPro domain DNA polymerase beta, N-terminal-like; (InterPro:IPR010996) -0.310575373766428 -3.10832297982759 0.0100768271682236 1 2.79470638616067 15.3439528200903 -0.310575373766428 0.0964169989691015
AT3G58470_at 6.30859407132808 6.42035688764876 6.14721117485019 6.43209664826147 6.8533210666736 7.24689324907798 6.27479015276888 6.51603875792737 5.3057524852709 5.06442414504298 5.38542911217061 5.55178861498293 5.77064265861338 5.78638933721717 6.0486320566717 5.50863791161497 5.81548986630908 5.96557183426353 5.82748928941253 0.205067468503688 0.195275570902427 0.199431833225902 0.193773763345272 0.200633475132124 0.207626338853396 0.191645973341759 0.202314817981711 0.214403855937873 0.208849339780775 0.201499914456256 0.192001680426130 0.19628557668362 0.191253075449945 0.205925352032497 0.192232763579500 0.194640440495639 0.19687099349246 0.190635236819002 3 3|0 -|/ 21638115 21639237 21638803.5 21637648 21639546 - gene protein_coding_gene FALSE TRUE AT3G58470.1 similar to unknown protein [Oryza sativa] (GB:AAL58958.1); similar to Os03g0749900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051279.1) 0.309893134017911 3.1077777492677 0.0100865828603752 1 2.79385214072587 12.0890600746783 0.309893134017911 0.0958464489451388
AT2G38700_at 8.01367562183583 7.70581961475747 6.97947058558144 6.89232152069852 7.61874451334357 7.49213876405578 7.95323324712397 7.90040542575886 7.97162574358117 7.83436242410582 7.87489900491495 8.28868445844953 7.79809332890805 8.06714209060233 8.38255961944919 7.61509312670216 7.36162021058573 8.16788802258651 7.74134969420833 0.147545747485557 0.140522316713719 0.155427890084577 0.164515755371648 0.143980985461157 0.151182607104951 0.139022510739874 0.139167370870841 0.145784795681984 0.145148760729233 0.142236349546203 0.142246299399369 0.144966432915773 0.138032106848165 0.144343261018980 0.145759307995130 0.163075118845538 0.149866747925538 0.144242282846983 2 2|0 -|/ 16188041 16189017 16188416.375 16187774 16191024 - gene protein_coding_gene FALSE TRUE AT2G38700.1 MVD1 (mevalonate diphosphate decarboxylase 1) Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer. similar to mevalonate diphosphate decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT3G54250.1); similar to mevalonate disphosphate decarboxylase [Arnebia euchroma] (GB:ABG24207.2); similar to mevalonate disphosphate decarboxylase [Hevea brasiliensis] (GB:AAL18927.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain GHMP kinase; (InterPro:IPR006204); contains InterPro domain Diphosphomevalonate decarboxylase; (InterPro:IPR005935) -0.276114884653085 -3.10647785109411 0.0101098802674319 1 2.79181547526456 15.4662812133477 -0.276114884653085 0.060244421060682
AT1G51960_at 0.80297589623694 1.05166795502988 0.417111873496019 0.658058759842202 0.387191019620861 0.49285435797317 0.971562814576152 0.650967306656746 1.25458808668645 0.999794684507984 0.89309492041147 0.995771965361018 1.19792171213682 1.01074249191639 0.970665367508977 0.665014881082003 0.692232139906012 1.12386231914960 1.21708596730494 0.188706313229178 0.185445971961283 0.185612933784652 0.181845277831740 0.188960788810657 0.182515320826008 0.182071992441844 0.181650773020986 0.188019111077678 0.183202933290433 0.185040157202866 0.185783476271257 0.181680806323616 0.186746085443534 0.184755696629663 0.189881978683028 0.187333758068540 0.184416102472814 0.185811882683382 1 1 + 19314671 19315296 19315019.636 19314024 19315352 + gene protein_coding_gene FALSE TRUE AT1G51960.1 IQD27 (IQ-domain 27); calmodulin binding similar to IQD26 (IQ-domain 26), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G16490.1); similar to IQ calmodulin-binding motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94112.1); similar to Os01g0190500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042265.1); similar to Os05g0187500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054836.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.296991255937144 -3.10639722329313 0.0101113271119881 1 2.79168914684617 1.72945848335424 -0.296991255937144 0.0836857289696088
AT2G22480_at 8.99476669520468 8.87885702907029 9.57930049490945 9.37417600937459 9.05796343000658 8.81242141832105 8.8020143684341 8.35290077274762 8.1264088677301 8.21149542110997 8.38542389310853 8.22561873367371 7.95006641174844 7.94573016080685 7.85648381021734 8.42625714826563 8.50334958402559 8.51463543869407 7.81728692234717 0.201078214470948 0.200423183766802 0.198979099222580 0.200025805901023 0.196855183753516 0.196855183753516 0.202025888918449 0.205325824709745 0.206694631643123 0.212878892238509 0.196855183753516 0.199784927227411 0.204881020420850 0.215023344711886 0.209166341147088 0.207624759237516 0.208602669220053 0.205131674612098 0.211325069479983 2 2|0 +|/ 9554567 9555467 9554994.25 9552627 9555646 + gene protein_coding_gene FALSE TRUE AT2G22480.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to putative diphosphate-fructose-6-phosphate 1-phosphotransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD09875.1); similar to putative phosphofructokinase [Oryza sativa (japonica cultivar-group)] (GB:BAD28914.1); similar to Putative pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Oryza sativa] (GB:AAK98672.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.311522932813593 3.10568674894248 0.0101240854558683 1 2.7905759601641 17.1203880529068 0.311522932813593 0.097512119651745
AT4G22310_at 10.7319841436388 10.8182441722436 10.9383783973351 10.783421257517 11.0102832977473 10.6756376384138 10.8389744489636 10.5608620535068 10.4913624841561 10.3943343266243 10.9670894319368 11.0166901532922 10.7201431926744 10.9006943286402 10.9060096349499 10.9007555110045 10.5040816546907 10.7660168729417 10.1960174819873 0.0797415269374553 0.0770591778494669 0.0803343094137666 0.0799602084086441 0.0779135862384824 0.08183579656117 0.0806659395136245 0.0795770986509037 0.0891500395892417 0.0769664074219453 0.0805671184990868 0.0788239401620724 0.080338172529633 0.0846634267364384 0.080358778596205 0.0779994493293813 0.081148844668187 0.0779908089151529 0.0805736246711856 4 4|0 +|/ 11791472 11792609 11792155.875 11791357 11792888 + gene protein_coding_gene FALSE TRUE AT4G22310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14695.1); similar to Os08g0344300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061597.1); similar to Os07g0449100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059546.1); similar to Protein of unknown function UPF0041 [Medicago truncatula] (GB:ABD28486.1); contains InterPro domain Protein of unknown function UPF0041; (InterPro:IPR005336) 0.294513804879425 3.10500646799617 0.0101363168817754 1 2.78951006673618 21.3926014403902 0.294513804879425 0.0813148361442047
AT4G04040_at 10.0122732623130 9.91861221500278 9.77620094662342 9.58916272540651 9.9724593712404 9.69933917002063 9.94637463768467 9.89133297622133 9.90145781162873 9.98144500797847 9.60141043428297 9.78051192330669 9.74245724376714 9.55051230975266 9.4757603605121 9.4624875703518 9.5013998049699 9.41165298148803 9.92148206843603 0.109021446234188 0.106465061159977 0.113825666193843 0.113101330537066 0.107936359548345 0.110006162549417 0.108656148313785 0.111343325155992 0.117819025300149 0.111344820533785 0.111524982133672 0.106647921859786 0.109618287078614 0.115730216325253 0.114133594854092 0.109656181322426 0.114786697547107 0.112705377043546 0.110352528837290 4 0|4 /|+ 1942055 1942734 1942266.778 1939248 1942952 + gene protein_coding_gene FALSE TRUE AT4G04040.1 MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Arabidopsis thaliana] (TAIR:AT1G12000.1); similar to pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi] (GB:AAC67586.1); similar to Pyrophosphate-dependent phosphofructokinase PfpB [Medicago truncatula] (GB:ABD32662.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41141); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) -0.275939301804932 -3.10409186569271 0.0101527849876768 1 2.78807700639279 19.6010039336816 -0.275939301804932 0.0602915884103241
AT1G14920_at 7.57389384416183 7.7323153641472 6.1926570843267 6.40744068270525 7.18344673413564 7.32121700391282 6.5237649979296 6.65608626580669 8.04944488919545 6.41141532508648 8.79203393711348 9.0089740111715 8.40566601736331 8.2911106039826 8.89907631349372 8.49202404002495 7.43335448764684 7.69531259332002 7.9952014946186 0.19375449481637 0.195111862180201 0.23191859025036 0.203258478818837 0.214349474202245 0.214175997293824 0.200455855597754 0.201750443659750 0.210618724148692 0.199987118511307 0.195227688015305 0.19375449481637 0.195136590462197 0.196507465948052 0.196836205093696 0.19375449481637 0.20813419161513 0.205089919111278 0.199998900161209 1 1 + 5150489 5150976 5150725.636 5149221 5151349 + gene protein_coding_gene FALSE TRUE AT1G14920.1 GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. Identical to DELLA protein GAI (Gibberellic acid-insensitive mutant protein) (Restoration of growth on ammonia protein 2) (GAI) [Arabidopsis Thaliana] (GB:Q9LQT8;GB:O23643;GB:O23724); similar to RGA1 (REPRESSOR OF GA1-3 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G01570.1); similar to DELLA protein RGA1 (RGA-like protein 1) (BrRGA1) (GB:Q5BN23); similar to DELLA protein GAI [Gossypium barbadense] (GB:ABG26370.1); similar to DELLA protein RGA2 (RGA-like protein 2) (BrRGA2) (GB:Q5BN22); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.27325767790324 3.10360098909863 0.0101616347634302 1 2.78730785753510 14.8801266988814 0.27325767790324 0.0567975154166297
AT1G69480_at 2.73599800792650 2.71633001952238 3.83781855452202 4.14371055443229 3.53395601223097 3.77121067183394 3.49474268369799 4.06511321819312 1.29109285951320 1.54582266053110 1.08315707787133 1.18715942531564 1.50750357001044 1.41141253376365 1.32224724506638 1.57617023746405 2.76867593691493 1.62061756957758 1.5253070483152 0.294286642042181 0.291501129628647 0.303197749346147 0.298326205624190 0.300226093630447 0.314087569346208 0.293100877416242 0.303704617158450 0.299873037613002 0.291501129628647 0.294987903112052 0.292473644031701 0.29535758989552 0.291501129628647 0.291501129628647 0.291501129628647 0.298632163777293 0.291501129628647 0.298917074508983 1 1|0 -|/ 26117876 26118582 26118219.1 26117775 26121142 - gene protein_coding_gene FALSE TRUE AT1G69480.1 EXS family protein / ERD1/XPR1/SYG1 family protein similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G26730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03240.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) 0.337085862982318 3.10290426073229 0.0101742091559465 1 2.78621614946579 5.04420603477048 0.337085862982318 0.119341119245861
AT1G51600_at 5.80120243288326 6.2618837129994 5.92372975023703 6.12961494946376 6.00116987415108 6.38220799085170 5.52257797492783 5.46226281058912 5.67916455334867 5.03349101448547 5.34872774142715 6.01379188764841 5.60479050946102 5.4385220753108 5.59916536962541 5.57456447993839 5.62364991443151 5.53936167414607 5.1542297373988 0.231448182745031 0.227542735963656 0.229480643842759 0.224106270514430 0.233459893601450 0.241778362657432 0.224106270514430 0.224106270514430 0.232524707268967 0.239021811503330 0.224106270514430 0.233382911166072 0.224974992181541 0.225130402160756 0.22656487681207 0.226139255695225 0.227684993182264 0.225777248442352 0.230149496349551 1 1|0 +|/ 19137329 19138720 19137838.333 19135889 19139209 + gene protein_coding_gene FALSE TRUE AT1G51600.1|AT1G51600.2 ZML2 (ZIM-LIKE 2); transcription factor member of a novel family of plant-specific GATA-type transcription factors. Identical to GATA transcription factor 25 (ZIM-like 2 protein) (ZML2) [Arabidopsis Thaliana] (GB:Q8H1G0;GB:Q94AN8;GB:Q9C541); similar to ZML1 (ZIM-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G21175.1); similar to male-specific transcription factor M88B7.2 [Marchantia polymorpha] (GB:AAT12424.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain ZIM; (InterPro:IPR010399); contains InterPro domain CCT; (InterPro:IPR010402) 0.325529423206805 3.10272131327746 0.0101775135606497 1 2.78592948553086 11.3764729244677 0.325529423206805 0.109919538626406
AT1G12120_at 8.17155161754419 8.2280366815616 8.01171978431067 8.05031054052965 8.39917093959767 8.44795666230333 7.60735423788598 7.88507540985624 8.0151763714143 7.83187251693675 8.6266480877094 8.21094230793409 8.41544853614992 8.48372505564332 8.15184742106717 8.31218133301281 7.91718070375254 8.0225786288116 8.1072201354043 0.109414956237599 0.108504435216320 0.107565831044177 0.110817485448241 0.110253780880422 0.111617157137943 0.115517644734929 0.108294825131291 0.117529601012989 0.117112042742711 0.110870531910669 0.111426205055832 0.107979268199362 0.111063362650819 0.111774725471677 0.109126255667927 0.119186988990246 0.113385683812081 0.117915360198068 1 1 - 4114961 4115506 4115268.364 4114769 4117592 - gene protein_coding_gene FALSE TRUE AT1G12120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62530.1); similar to Os10g0553900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065339.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) 0.268548831490827 3.10239512303519 0.0101834079193397 1 2.78541836919316 16.2263096594546 0.268548831490827 0.0502123720997959
AT3G06410_at 7.15859882773846 7.60212422086426 6.74075238042382 7.28309892442134 7.30113530951436 7.16315177631165 8.13959222226856 8.24631272333838 8.34744798951628 8.38703301724526 8.50471912399833 8.75007271380946 8.27556523442414 8.35961950317067 8.34119069896183 8.52751472110064 7.77426250994538 8.17513640769655 8.35155148761911 0.202716891824877 0.192922061481096 0.200601069783462 0.198461235151419 0.197786158926440 0.216588842886173 0.185369695179997 0.185466326423832 0.199821696563752 0.189993364243751 0.189609989885754 0.1855915237508 0.18820979860654 0.193394929757 0.186190021867023 0.185369695179997 0.208731664206507 0.190246634327874 0.191669062113706 3 3 - 1947500 1948122 1947811.455 1947246 1949795 - gene protein_coding_gene FALSE TRUE AT3G06410.1 nucleic acid binding Identical to Zinc finger CCCH domain-containing protein ZFN-like 2 [Arabidopsis Thaliana] (GB:Q9SQU4); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to putative floral homeotic protein HUA1 [Oryza sativa (japonica cultivar-group)] (GB:BAD81402.1); similar to Os01g0258700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042637.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.344061559103233 -3.10167244917322 0.0101964791766980 1 2.78428598060341 15.8046062709094 -0.344061559103233 0.124945379655505
AT2G23270_at 3.15445690922013 2.69376146316991 4.17175934171129 4.18369787754342 2.85658853899653 3.26329450870510 2.82270875959697 2.66841502295253 2.97261976605250 2.99703638365363 2.64540712179421 2.88699570269015 2.78284548054273 2.6973501080753 2.70700623927250 2.97139436016136 3.27116744377003 3.31205530335584 3.15987221010495 0.187685963495841 0.191418347461052 0.203671610558175 0.208322225373678 0.192867630273518 0.185961867983621 0.197422056965348 0.186547843754039 0.190926730595497 0.189621076115275 0.194581021678327 0.195429779935384 0.190623624111894 0.196716944915394 0.194323935737822 0.189937411309319 0.185961867983621 0.185961867983621 0.190427440653646 2 2 + 9910438 9910619 9910537.091 9910295 9910925 + gene protein_coding_gene FALSE TRUE AT2G23270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37290.1) 0.325050564012467 3.10101923525137 0.0102083087065212 1 2.78326241839746 6.20306222268438 0.325050564012467 0.109667940380403
AT1G02860_at 6.18758306367213 6.48888543473603 7.36880757766444 7.47551128302551 8.62510505230577 7.32455457963604 7.32291625830812 7.35230435753382 6.72472535087143 6.79570494218052 6.82886352160641 6.70506244418224 7.38437457580562 7.06114353299003 6.61164739000593 7.27564510474527 6.95938157625657 6.95676414636587 6.96282871224695 0.218785593889815 0.217660011737996 0.216921941776982 0.221782696018965 0.240971304042088 0.219595672129352 0.219482868508362 0.227060834918112 0.23347642738068 0.218299874915167 0.214128082914244 0.212729372561980 0.217660016147724 0.214480189336944 0.221307255825880 0.218182088756691 0.237572240128353 0.217658198018739 0.212729372561980 1 1|0 +|/ 636134 637050 636485.9 635144 637262 + gene protein_coding_gene FALSE TRUE AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related similar to SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related [Arabidopsis thaliana] (TAIR:AT2G38920.1); similar to Zinc finger, RING-type; SPX, N-terminal [Medicago truncatula] (GB:ABE85047.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.502839814661926 3.09937242100216 0.0102381937941387 1 2.78068186502242 14.1685150949908 0.502839814661926 0.231819882862273
AT1G13195_at 5.81780893051259 6.45660707105091 6.12107840364743 6.52345280806513 6.80659128521742 6.55456978268817 6.06421206710083 5.7088709352251 4.19408981554733 5.5413928882903 5.09546858778846 5.17338764128043 5.09560446836628 5.46684100580808 4.89895865105812 5.82448266608065 5.87435697677556 5.05005091407836 5.39068251896158 0.211255903160522 0.209411084519006 0.219985016161357 0.219660369746177 0.209411084519006 0.213864667895829 0.216213151126339 0.218017284466056 0.222082699889653 0.212787057947644 0.210079602653157 0.212813466389109 0.217959027712841 0.213681034389147 0.231612201243805 0.212824020229813 0.223595373416956 0.209411084519006 0.225003637072593 1 1|0 -|/ 4501795 4502716 4502152.7 4501579 4503588 - gene protein_coding_gene FALSE TRUE AT1G13195.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G24440.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE84624.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.378693554285136 3.09923087841871 0.0102407665281440 1 2.78046006446412 11.4326233795239 0.378693554285136 0.150840780859476
AT3G14690_at 10.0408802114563 10.3190148280824 10.1228816747980 10.316060782916 10.2487505976126 9.97591649080273 10.5437844387016 10.7211155134298 9.57202606790864 10.2425745971941 9.55162373355703 9.31316402421217 9.66212801839249 9.44599694589767 9.14055587395797 9.8804522668222 9.77789844130932 9.66721398476383 9.89249696536999 0.114152486321874 0.107635583801982 0.109920732470768 0.113452664757460 0.107686972373123 0.113210486801508 0.110841157117342 0.109498644188638 0.114315021697736 0.110481009719617 0.110828944249308 0.110492526732134 0.109696959677552 0.124362271762538 0.108891198609249 0.111739845645352 0.123783689582927 0.111360341532986 0.110535147174598 3 3 + 4938968 4939221 4939096.182 4937324 4939472 + gene protein_coding_gene FALSE TRUE AT3G14690.1 CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.293891538547661 -3.09887253654884 0.0102472828186323 1 2.77989853170212 20.0146730861941 -0.293891538547661 0.081273403934434
AT4G27710_at 9.07977241530122 9.07847603827797 8.82227956782616 9.02690276731284 9.37625423285445 9.01817161504175 9.79214272531914 9.55381474964585 9.19673328119932 9.64218656367046 9.14310797020316 9.4037492670411 8.91374900004819 9.10735185235861 9.08200631013176 9.333264650805 9.33455063428607 9.1954174113355 9.5532457222283 0.142363955365877 0.135099758525580 0.146104627009942 0.143119866076632 0.138550642196672 0.141923589752737 0.140693741757776 0.138697948998787 0.15004471336197 0.138424896973539 0.14145544936899 0.135275207917958 0.143777245801103 0.139348225750398 0.142654366668765 0.134923378814722 0.142945684652097 0.135536373585538 0.137867274229856 4 4 + 13829895 13830384 13830205.727 13828438 13830602 + gene protein_coding_gene FALSE TRUE AT4G27710.1 CYP709B3 (cytochrome P450, family 709, subfamily B, polypeptide 3); oxygen binding member of CYP709B similar to CYP709B1 (cytochrome P450, family 709, subfamily B, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46960.2); similar to CYP709B2 (cytochrome P450, family 709, subfamily B, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46950.1); similar to cytochrome P450 CYP709C1 [Triticum aestivum] (GB:AAT68297.1); similar to Os07g0635500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060386.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.295027494191878 -3.09886111778845 0.0102474905328150 1 2.77988063809069 18.5450791769769 -0.295027494191878 0.0824321181366719
AT3G25720_at 0.629045537506103 1.21540009381797 0.789247355138264 0.996829454790235 0.868692079291027 0.533134634273356 1.14865281562743 1.50761064879831 1.59138881976116 1.71573794098236 0.891256524901956 0.74967440205497 1.67229244407034 1.27641933681731 1.24105476278129 1.18712970464004 0.680219892950384 1.36750258947081 1.26653654418325 0.252785481655668 0.252586754207434 0.264660975556295 0.249877095977200 0.254481983698742 0.263925814371612 0.2548217132215 0.253987857110370 0.258289826331583 0.249877095977200 0.262419006283921 0.249877095977200 0.257868867206461 0.255188524480792 0.254222904837264 0.254800066664118 0.26833597915426 0.258543367603051 0.250261606957091 3 3 + 9382082 9382518 9382289.25 9381471 9382642 + gene protein_coding_gene FALSE TRUE AT3G25720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10613.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.35978106041447 -3.09837407770174 0.0102563540575406 1 2.77911742507897 2.28995064849858 -0.35978106041447 0.137178055532052
AT4G12920_at 1.42612037482431 1.45702315104136 1.70479265534399 1.33375505477053 0.965372831036287 1.23043172122931 1.34522084047259 1.46241040417521 1.65577523625516 1.71986559738305 1.18943182410974 1.23848280580249 1.21011321619863 0.972584253725454 1.44113784898537 0.850420360076313 1.25696970736178 1.62977519536703 1.71809570674302 0.185539544485672 0.187013707474992 0.192846006683531 0.188603501298721 0.191371264440361 0.185015021127382 0.193578814898286 0.191217072694647 0.189515959338227 0.194078056411077 0.192094223634089 0.189745526436620 0.185450792378086 0.186006614959280 0.201035502706997 0.192591595681137 0.191518304776152 0.189096003848968 0.191294166981898 4 4 + 7568880 7569389 7569144.455 7568283 7569452 + gene protein_coding_gene FALSE TRUE AT4G12920.1 aspartyl protease family protein similar to aspartyl protease family [Arabidopsis thaliana] (TAIR:AT4G30040.1); similar to Os02g0314600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046662.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE82304.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.294201702853532 -3.09825509960506 0.0102585204906452 1 2.77893098017296 2.82640416990191 -0.294201702853532 0.0816505376538199
AT3G24320_at 2.42012523571961 2.24626299211115 2.61151096015884 2.94289508028037 2.37649196123309 2.84094689069727 2.24470156888639 2.45631774140331 1.90359579341572 1.91066492874059 2.41188871867612 2.31583988108292 2.08934936412655 1.95251217203820 2.81662946199294 2.51949933864268 2.57786679392567 2.38034051046469 2.44065479400566 0.199797228453104 0.196415404493873 0.207476253306765 0.201605033431576 0.196175193693021 0.202898844820714 0.196175193693021 0.198766352828805 0.201100289582113 0.201334727395819 0.199050466021961 0.198090894397412 0.202760022135441 0.196768357806879 0.198587392622135 0.198146993786735 0.202427294985761 0.200068367294293 0.197616061754400 3 3 - 8823272 8823865 8823582 8822986 8829701 - gene protein_coding_gene FALSE TRUE AT3G24320.1 CHM (CHLOROPLAST MUTATOR); ATP binding / damaged DNA binding Promotes re-arrangements of mitochondrial genome. Mutations affects mitochondrial gene expression, and impairs mitochondrial function. Dual targeting of the protein to mitochondria and chloroplasts caused by alternative translation initiation. similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to DNA mismatch repair protein [Phaseolus vulgaris] (GB:AAX31514.1); similar to DNA mismatch repair protein [Lycopersicon esculentum] (GB:AAX53097.1); similar to DNA mismatch repair protein [Glycine max] (GB:AAX53095.1); contains InterPro domain Excinuclease ABC, C subunit, N-terminal; (InterPro:IPR000305); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS, N-terminal; (InterPro:IPR007695) 0.324564139980171 3.09801785159242 0.0102628418450453 1 2.77855919888799 4.75138786323094 0.324564139980171 0.109523684167477
AT2G25650_at 4.91889175324135 5.32183338488744 5.50164233758973 5.08646059663002 5.25951913856731 5.6499731090007 4.64896475475382 4.56674449620303 4.30479372704476 4.53953555757495 4.81452450148911 4.32786081073928 4.58267442779605 4.90620780664732 4.47472610461739 5.08188418714182 4.39435667493329 4.62456440563672 4.60301394755561 0.228758184016029 0.240226777090332 0.234027270696086 0.240328366535465 0.241815382587662 0.250210292817587 0.228758184016029 0.230404585866855 0.242824058662557 0.230821986111971 0.235754426224641 0.228758184016029 0.230355119215450 0.232254983823857 0.236830745678725 0.234257104945650 0.247322740350715 0.238996605910520 0.232606652640245 2 2 + 10922485 10922891 10922674.818 10921664 10923294 + gene protein_coding_gene FALSE TRUE AT2G25650.1 DNA-binding storekeeper protein-related similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT4G00270.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.339346159496109 3.09726636513275 0.0102765419655078 1 2.77738156559089 9.68590250082595 0.339346159496109 0.121625830445927
AT1G15830_at 4.90459763396472 4.51933269932818 4.77797285998651 4.44258455187547 4.10334834468606 4.54951970906202 4.43382130437001 4.49537039277654 5.45896886159711 5.48222356271624 4.73987563909092 4.74157867777006 4.68569229405063 5.36245737903184 4.89683228404590 4.93570638109603 5.16115329422055 5.21093080276306 5.60568222990964 0.214490940284785 0.203184176945757 0.208909415949246 0.211121512730149 0.202847758651906 0.205178980376275 0.20095994625855 0.204299991221991 0.209997217606518 0.214666868851802 0.209084095571008 0.201738172955475 0.20095994625855 0.2056625947882 0.20457039440421 0.204874701452896 0.20095994625855 0.204543568191293 0.217498064104356 1 1 + 5449628 5450134 5449912.545 5448721 5450172 + gene protein_coding_gene FALSE TRUE AT1G15830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv] (GB:YP_177981.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) -0.334385340969861 -3.09512409162134 0.010315698817076 1 2.77402437968385 9.769520051381 -0.334385340969861 0.117851568269499
AT1G80280_at 1.64752424408084 1.59376593838616 0.826207474606826 1.11760617461147 0.478183790814255 0.684047420171394 0.931762099892532 1.09426674432656 1.14296924015088 1.24213635199681 1.20891493250403 1.61169495798834 1.39164955093553 1.45810395176691 1.74188600463745 1.16923655081514 0.505356844373086 0.95161706607436 1.44920429010011 0.195628512593519 0.192434735605642 0.198755030513896 0.195884732105471 0.198134552877854 0.196050195184999 0.192148426033567 0.193179936223701 0.197621013087812 0.203461209799906 0.194389040477113 0.194356237737536 0.203215298674269 0.192148426033567 0.193369954369154 0.203100740088107 0.194925490953099 0.203435769759878 0.204281091289998 1 1 - 30188754 30189351 30189040.455 30188433 30191478 - gene protein_coding_gene FALSE TRUE AT1G80280.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G15490.1); similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G52750.1); similar to Alpha/beta hydrolase fold [Pelodictyon phaeoclathratiforme BU-1] (GB:ZP_00590443.1); similar to Os01g0647700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043711.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -0.281807176658141 -3.09509661653469 0.0103162019913734 1 2.77398132224896 2.31312587409598 -0.281807176658141 0.0684804115511831
AT3G27870_at 3.97746349966288 3.73356915890285 4.07939204383045 3.39760019476892 4.57018310117854 3.54424320036155 2.94308458152748 2.97064434573809 3.19930009956034 3.20732513955217 3.5882260497261 3.83159440279497 3.89769837113186 4.01441758305214 3.75172659132771 3.64644796755244 2.98761597175419 3.25060789204349 3.05907519934193 0.206949301578005 0.204775397827528 0.204780195496241 0.201269259168777 0.201658530281355 0.203541821157075 0.206200130525627 0.207296365500227 0.215961140889254 0.201332140870466 0.20679864628772 0.203049803652390 0.199195806523075 0.207214090396188 0.199647964446796 0.204840410158204 0.198516181181626 0.208917445710349 0.196585526123329 3 3 + 10336012 10336469 10336268.364 10332187 10336542 + gene protein_coding_gene FALSE TRUE AT3G27870.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 8 (EC 3.6.3.1) (Aminophospholipid flippase 8) (ALA8) [Arabidopsis Thaliana] (GB:Q9LK90); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G26130.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type cation exchange, alpha subunit; (InterPro:IPR006069); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) 0.478736306382545 3.09445557920743 0.0103279489007946 1 2.77297671793697 7.04016018232518 0.478736306382545 0.217363601563586
AT4G38810_at 8.86333629581098 8.75157783884914 9.19269333973818 9.04124497927347 9.3843703561822 9.16384229303271 9.37819042204321 9.34920372030538 7.65197063296426 8.31391285298701 8.43997820255004 8.43912143422404 8.71172076897548 8.50870333446669 7.87978591340563 8.65878720302824 9.04806492729045 7.65777289783455 8.0108244956129 0.128132233963033 0.125088325065656 0.122211276176531 0.122336836645758 0.126882980431825 0.126376724438235 0.127821790490712 0.128315035159346 0.146674673407128 0.128069995624003 0.127578526819726 0.121903269291464 0.130411453870304 0.134506783296050 0.123168325839303 0.124293469867861 0.127213081757083 0.139247364408685 0.132816705406536 4 4|0 -|/ 18115618 18116429 18116068.2 18115277 18119071 - gene protein_coding_gene FALSE TRUE AT4G38810.1|AT4G38810.2 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28830.1); similar to 39 kDa EF-Hand containing protein [Solanum tuberosum] (GB:CAA04670.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992)|similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28830.1); similar to 39 kDa EF-Hand containing protein [Solanum tuberosum] (GB:CAA04670.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.267858257085813 3.09280339238703 0.0103582874317289 1 2.77038743286107 17.3456713201927 0.267858257085813 0.0504238096402568
AT3G50720_at 1.77241295683265 2.04829878792979 2.16290914659778 2.36740075932075 1.47378614526916 1.83415020922096 1.97319348179181 2.31862725854788 2.66443212943447 2.71557708075456 2.03133547454147 2.02488330585764 2.04610355701850 2.08533941082737 2.18102517592827 1.85165888304163 1.93326545034944 2.29346302873785 2.49276099910637 0.240437209504542 0.240331998974874 0.245207422467786 0.245618863861273 0.241098821860389 0.239168073081664 0.245602967828603 0.238771609837949 0.245010522385324 0.245730639762543 0.243649206148905 0.240088295433716 0.238106515157756 0.237258343737274 0.250920616813767 0.237029330606365 0.245593269726541 0.2452878379703 0.242408687275219 3 3|0 -|/ 18858585 18859166 18858865.9 18858500 18860411 - gene protein_coding_gene FALSE TRUE AT3G50720.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G50730.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06442.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.318472003408700 -3.09214680177672 0.0103703692120878 1 2.76935841152614 4.33391785429863 -0.318472003408700 0.104854071314356
AT3G27430_at 9.4755507610018 9.51461183355461 9.91532604660617 9.61663952850163 9.53506383001598 9.5333853842191 9.52405091358678 9.48781519180394 8.73116114151832 8.8531975094945 8.96428597505513 9.27131828708653 9.1116947851753 9.05364015393813 9.38531601239527 9.01101094236042 9.17104833872988 9.05893199666528 8.63448240938241 0.132995254901893 0.136457395812019 0.141707811595266 0.141569170598664 0.133814262408125 0.141923569989029 0.139396351640260 0.134512047499523 0.148946549157982 0.137032128667152 0.143319685742694 0.132995254901893 0.139565163427871 0.139580159717207 0.137815175286294 0.132995254901893 0.147001594726097 0.142051743992145 0.150622910074891 3 3|0 +|/ 10154894 10156228 10155362.9 10153754 10156579 + gene protein_coding_gene FALSE TRUE AT3G27430.1|AT3G27430.2 PBB1 (20S proteasome beta subunit B 1); peptidase Encodes 20S proteasome beta subunit PBB1 (PBB1). Identical to Proteasome subunit beta type 7-A precursor (EC 3.4.25.1) (Proteasome subunit beta type 2) (20S proteasome beta subunit B-1) (Proteasome component FA) (Proteasome component FB) (PBB1) [Arabidopsis Thaliana] (GB:O23710;GB:O81152;GB:Q3EAZ2); similar to PBB2 (20S proteasome beta subunit B 2), peptidase [Arabidopsis thaliana] (TAIR:AT5G40580.2); similar to Os05g0187000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054834.1); similar to proteasome subunit beta type 7 [Dictyostelium discoideum AX4] (GB:XP_638961.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.269194323488138 3.09203498266664 0.0103724281921692 1 2.76918316528121 18.5093151852733 0.269194323488138 0.0525058368356994
AT3G56000_at 1.18663303132147 1.62490317979980 1.36964163550435 1.04077721635441 2.08871340207928 1.698909278439 2.03982848748642 1.86321834564632 2.72388637673422 1.96345215721173 2.21264926151035 1.8754581360925 2.29567602341496 2.20518278513336 1.49226017064512 1.68523010970502 1.01590293798090 1.75295362438923 2.39826939991764 0.198798702904747 0.192678928716583 0.199902172803024 0.200064427495391 0.197337913132664 0.201085357750180 0.200949664904599 0.195448443667724 0.203738122289003 0.213505800354578 0.206301431030170 0.212699489823676 0.198752629411824 0.208960752001021 0.195336261642422 0.194744714336320 0.205622015383175 0.199327878561021 0.201514788666537 3 3|0 -|/ 20794457 20794998 20794783.7 20794307 20796773 - gene protein_coding_gene FALSE TRUE AT3G56000.1 ATCSLA14 (Cellulose synthase-like A14); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA03 (Cellulose synthase-like A3), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G23480.2); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to Os02g0192500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046164.1); similar to Os06g0625700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058114.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -0.337045279074088 -3.09130196931422 0.0103859357775102 1 2.76803435625819 3.70346979327728 -0.337045279074088 0.120316051373284
AT1G60390_at 2.02453988300379 1.73345363288443 2.20143846463362 1.82854351384294 1.84879946943514 2.00038679048614 2.17643379046525 1.92814221746700 1.86797563407019 1.93179789309512 2.12069617283756 2.71726195225223 2.49496867077304 2.33893954729548 2.88849357742575 2.75709113783733 2.52392276668562 2.26158050164285 1.90052605623159 0.268706628066306 0.264425902613563 0.268758610937185 0.274916309449831 0.270438603990287 0.26902098002067 0.263886571253907 0.276849851613834 0.253737882337718 0.264616318344071 0.261661814991799 0.270710754802220 0.256569385469227 0.256947962357891 0.264114907275029 0.253737882337718 0.275123425608031 0.259628527222981 0.253737882337718 1 1 - 22251371 22251801 22251589.455 22251139 22253301 - gene protein_coding_gene FALSE TRUE AT1G60390.1 BURP domain-containing protein / polygalacturonase, putative Identical to Probable polygalacturonase non-catalytic subunit At1g60390 precursor (Aromatic-rich glycoprotein At1g60390) [Arabidopsis Thaliana] (GB:O80760); similar to JP630, polygalacturonase [Arabidopsis thaliana] (TAIR:AT1G23760.1); similar to BURP domain-containing protein / polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT1G70370.1); similar to Polygalacturonase-1 non-catalytic subunit beta precursor (AroGP1) (Polygalacturonase converter) (PG converter) (GB:Q40161); similar to polygalacturonase isoenzyme 1 beta subunit homolog (GB:AAB39546.1); similar to Polygalacturonase non-catalytic subunit AroGP2 precursor (GB:P93217); contains InterPro domain BURP; (InterPro:IPR004873) 0.308459554177888 3.09056445272005 0.0103995443160924 1 2.76687847450623 4.17420179626530 0.308459554177888 0.096105229467165
AT4G27510_at 1.38516552904524 1.05973997025008 1.64876914383673 1.65621606290657 1.37274910809359 1.67690821636040 1.38196937302034 1.48734821523377 1.39252079864303 1.63783734405871 1.94809817991522 1.61563235546855 1.65459190617733 2.02527126632087 1.85735019648059 1.54568274634223 1.51744540907208 1.88919448429036 1.27335733956816 0.163297424766288 0.175269599686645 0.165603154928837 0.163982983085277 0.161169389126417 0.166844188137004 0.163569100293784 0.162827155457281 0.168112487176691 0.171506440038915 0.163378310737331 0.161177902030404 0.163599862151143 0.166604684199747 0.160816378294908 0.171539658474955 0.186521705623231 0.161283674112075 0.176120236698098 4 4 - 13746401 13747185 13746837.909 13746182 13749037 - gene protein_coding_gene FALSE TRUE AT4G27510.1 similar to Os02g0461200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046790.1) 0.291095675748533 3.09024182048558 0.0104055031479192 1 2.76637282052622 3.05422327505919 0.291095675748533 0.0792232673130167
AT2G35950_at 0.201188872838092 0.737085192616931 0.553571782881376 0.696730164536876 0.157567275875491 0.195301613508616 0.69902638363004 0.802658476925751 0.756806130775118 0.401363560289457 0.600456092426564 0.3429165968521 -0.0166802950019986 0.289411101640583 -0.0375284298912507 -0.0158806518059539 0.401461704304612 0.420544436972756 0.820212728666946 0.236845469685943 0.236704782217033 0.249339278119827 0.236704782217033 0.236704782217033 0.236704782217033 0.236927388849048 0.242904719345259 0.245357472864044 0.236704782217033 0.239460401188411 0.242441145227316 0.237034474998657 0.245207318071260 0.244318433222985 0.236704782217033 0.248630941560653 0.236704782217033 0.237950989561168 2 2 + 15111968 15112556 15112090.667 15111840 15113167 + gene protein_coding_gene FALSE TRUE AT2G35950.1 EDA12 (embryo sac development arrest 12) -0.310285129721056 -3.08939808104436 0.0104211028717854 1 2.76505043381815 0.959165408358822 -0.310285129721056 0.09787043420151
AT1G48090_at 9.49512503318873 9.55507346423872 9.8650801754094 9.89891156504587 10.0920903677567 9.6655311454428 9.57867424851065 9.51715050203803 9.06914662603682 9.5553631369823 9.7639226421945 9.33416846316067 9.79787532308862 9.34540711929927 8.93688338070018 9.78000953950938 10.0399805620060 9.74838541533407 9.46310866859262 0.123263586511508 0.120725042438615 0.125222055100843 0.123491766477298 0.121344116593807 0.121544179190953 0.124105252737286 0.123579216963674 0.139567613933832 0.120804513960646 0.123323076889741 0.121936644222911 0.123217174517226 0.124154427753067 0.131562516494105 0.118304802801736 0.126779155888086 0.123902651992002 0.127881117689355 1 1|0 -|/ 17736271 17737054 17736603.6 17735679 17761639 - gene protein_coding_gene FALSE TRUE AT1G48090.1|AT1G48090.2 C2 domain-containing protein similar to pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G17140.1); similar to vacuolar protein sorting 13C protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19476.1); similar to Os02g0470400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046831.1); contains InterPro domain Cytochrome cd1-nitrite reductase-like, C-terminal haem d1; (InterPro:IPR011048); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.287343539938665 3.08720500226567 0.0104617610632877 1 2.76161314635873 19.1863888291366 0.287343539938665 0.0755272727121021
AT2G23900_at 1.57382408039772 1.57640251303896 1.44260012178637 1.19815583754103 1.11755398973462 1.16640929451153 1.14234136945134 1.21196735844739 2.49542774730551 1.63230537757227 1.13119903636791 1.92418840525974 1.17132659900418 1.20546757749869 1.32035093785518 1.66489285036488 1.92767309986692 1.28109126740349 1.37987972193377 0.209096682490342 0.209188262098258 0.208833294154105 0.207846914048363 0.214862816876492 0.208074414703087 0.216020839405894 0.215256430266987 0.221994872000588 0.214559837360353 0.219066867329855 0.204764223926734 0.211459067724880 0.213793489658783 0.218762397730575 0.212453227574118 0.205447847568477 0.208497666218799 0.215071339426928 2 2 + 10182977 10183545 10183248.182 10181600 10183706 + gene protein_coding_gene FALSE TRUE AT2G23900.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G48950.1); similar to Peptidase S26A, signal peptidase I; Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE85310.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.263775623337513 -3.08649005373513 0.0104750503934015 1 2.76049255489045 2.94822915593352 -0.263775623337513 0.0447921754520041
AT1G13330_at 1.64656295624163 1.63301092964563 1.64389232363511 2.02342930853552 1.66006877176112 2.11432981142272 1.39286047602857 1.46435198245871 1.40642650103478 1.52827755540858 1.47255356259334 2.02646094593019 1.73625358650733 1.75125604293047 2.09842630253459 1.42126847817946 1.76321127953381 1.81443636349640 1.42958111662915 0.179288084731038 0.180896360420168 0.177131281157665 0.177131281157665 0.177131281157665 0.182891162389116 0.177131281157665 0.178385133112537 0.188998377302805 0.185525738224552 0.18108523857434 0.177131281157665 0.186789524695030 0.179566409169325 0.177131281157665 0.17819666803543 0.177131281157665 0.179151758267082 0.177417614929626 1 1 + 4568553 4569349 4568927.636 4567932 4570595 + gene protein_coding_gene FALSE TRUE AT1G13330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Tat binding protein 1 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98498.1); contains InterPro domain Tat binding protein 1-interacting; (InterPro:IPR010776) 0.315977531800336 3.08627188021439 0.0104791091632852 1 2.76015059273209 3.30493584225148 0.315977531800336 0.103210258212980
AT3G46690_at 3.06893973763809 2.69126415584814 3.2719283716561 2.85283823784499 2.80565731879613 2.38626636093314 2.00003272351198 2.04360485314655 2.30623787170560 2.52697836524745 2.5210072186137 2.64102433617034 2.94055390755406 2.46582347197407 2.04879992099412 2.49650285308457 2.58791281512102 2.95719515276179 2.01777115053091 0.194203116681321 0.202448249436027 0.197337103283339 0.190988052211735 0.200721113480221 0.196974534411371 0.197979568766587 0.188291004075971 0.18981153485694 0.192658798156894 0.192048408356407 0.194861961997165 0.197068166928274 0.190166637878703 0.187866096234850 0.187866096234850 0.189042903642445 0.193230387948388 0.192701990057442 3 3 - 17208762 17209268 17209103 17208614 17210322 - gene protein_coding_gene FALSE TRUE AT3G46690.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46720.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46680.1); similar to UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G46700.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.338451100905475 3.08611193947682 0.0104820856162323 1 2.75989990302164 5.07307393093632 0.338451100905475 0.121885372962392
AT1G28590_at 1.13951123219019 1.44785551144204 1.08270946782269 1.02783496785710 1.30805152980064 1.16234128701627 0.9364450777669 1.07044570270303 1.76798242274944 1.80291624571574 0.893665566471226 0.842896801910509 1.64584407608930 1.34574695135452 1.17500709877641 1.3854904325747 1.04528114000803 1.33585205074532 1.70919371366735 0.204417503199999 0.201288166764271 0.200676244007858 0.200814005499354 0.202082342849280 0.199371383254960 0.197855049933220 0.199070543020453 0.201803508872045 0.208382394392384 0.198099277555156 0.196849030984434 0.203023277200987 0.196362574031822 0.196806820970746 0.196362574031822 0.211067336379410 0.203324620060554 0.206723790155077 1 1 - 10047560 10048101 10047782.909 10047262 10049286 - gene protein_coding_gene FALSE TRUE AT1G28590.1 lipase, putative similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT2G27360.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.277318923602146 -3.08563419466147 0.0104909814107585 1 2.75915108590818 2.63127625146757 -0.277318923602146 0.0641178733803393
AT1G32860_at 3.20738220844687 2.80978568955217 3.20824843913648 3.16228954034692 2.92535678427879 2.90577935208848 2.92743640523665 3.23528159769585 3.11039795758521 3.07279806730778 3.78838821830968 4.14787921941824 3.23878080310701 3.89284881642566 4.06279570102907 3.40801605713026 3.09064471775939 3.90928958781427 3.11786455425834 0.196809122390269 0.191531308834378 0.191826439870637 0.207478671216485 0.196868533952983 0.198502145106667 0.191531308834378 0.196774767116629 0.201779058002245 0.194181642577631 0.193163155656877 0.197015757779056 0.19527069832822 0.196912494589764 0.200716791746768 0.191531308834378 0.210747035647651 0.199915905306647 0.193768503112558 1 1 - 11907577 11908085 11907851.455 11907089 11908908 - gene protein_coding_gene FALSE TRUE AT1G32860.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 11 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 11) ((1->3)-beta-glucanase 11) (Beta-1,3-endoglucanase 11) (Beta-1,3-glucanase 11) [Arabidopsis Thaliana] (GB:Q8L868;GB:Q9MAQ2); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G42100.2); similar to hypothetical protein - potato (GB:S31196); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.298711958735102 3.0847148147648 0.0105081221261697 1 2.75771003294624 6.44403696035176 0.298711958735102 0.0874477854884645
AT4G36430_at 2.22408194313779 2.11689341170141 2.17572511909962 1.31738977688962 1.13298845423555 1.46957046745720 1.26930992045056 1.68621100477840 1.44068632666936 2.78333799392405 1.40955509031637 1.84823570764174 1.60502980985234 1.68670740452347 2.20915480471127 1.53747922445073 1.18045774620140 1.70819367950802 2.29900350757521 0.247890832841819 0.25620756493935 0.258937995100117 0.259256961982931 0.242224412137741 0.242947742115232 0.233496863149280 0.243992399066225 0.249683062567087 0.240633311855801 0.240031967875534 0.233496863149280 0.246247772894305 0.238116159673152 0.242399010274189 0.242093467857688 0.245418842746167 0.247515181713833 0.244338806703312 4 4|0 -|/ 17204684 17205262 17204951.3 17204481 17205969 - gene protein_coding_gene FALSE TRUE AT4G36430.1 peroxidase, putative Identical to Peroxidase 49 precursor (EC 1.11.1.7) (Atperox P49) (ATP31) (PER49) [Arabidopsis Thaliana] (GB:O23237); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT2G18150.1); similar to peroxidase [Dimocarpus longan] (GB:ABG49114.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.413223270792709 -3.08306110794282 0.0105390248343822 1 2.75511792614257 3.58524340861387 -0.413223270792709 0.176084536893029
AT2G28210_at 1.85978307067443 1.67562150395636 1.78341079201269 2.14497781375244 1.45231028351913 1.34985872378980 1.48591481919721 1.91672146696821 1.95696893543299 2.83411232667584 1.88883433538451 2.41239593856295 1.51507179143599 1.79207045305894 1.64393831727211 2.06630921571267 1.33996066202262 2.01502479850783 2.45480616147384 0.332073488728030 0.330154431662388 0.331000830913952 0.331107822271492 0.320095842421246 0.329443963797565 0.327077520095569 0.327724454430227 0.332205550509539 0.320095842421246 0.320095842421246 0.334021556217338 0.320095842421246 0.335750318633944 0.333748285923981 0.323553651056109 0.333362393203195 0.320095842421246 0.324995116173481 2 2|0 +|/ 12037265 12039330 12038410.571 12037074 12039497 + gene protein_coding_gene FALSE TRUE AT2G28210.1 carbonic anhydrase family protein similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT1G08080.1); similar to Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 precursor (Nectarin-III) [Contains: Nectarin-2] (GB:Q84UV8); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148) -0.316482965398363 -3.08305814392542 0.0105390803052555 1 2.75511328012167 3.83332305766158 -0.316482965398363 0.103939011599367
AT1G16390_at 1.76682003723564 1.47416585074368 1.45490668552066 1.13057965574405 1.32710083965922 1.34675516786380 1.98135319467275 1.96221421733786 1.07648248616812 1.49373228928491 1.40763881242709 1.24363655501176 1.35468455194670 0.993169718936476 1.40477787979473 1.03760864713372 1.29977846566809 1.11564410001966 1.40484860482331 0.176235010057067 0.182359344903417 0.175571985783661 0.174124804531750 0.171956171080092 0.182114688201885 0.174925524763263 0.172338462932672 0.183720313798395 0.176410040623524 0.183411031292067 0.171956171080092 0.177323833217057 0.176849899466576 0.179577558956082 0.171956171080092 0.172899078724459 0.175506257381446 0.172849109870461 1 1 + 5603981 5604368 5604172.364 5602867 5604657 + gene protein_coding_gene FALSE TRUE AT1G16390.1 organic cation transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.287103261596025 -3.08244867331691 0.0105504926792425 1 2.75415794576483 2.83405619016024 -0.287103261596025 0.075747172563675
AT3G22950_at 8.71499235227367 8.84209864742722 8.80016680978639 8.75480444980692 8.96746839864631 8.63433377877593 8.55228327925416 8.63606196386241 8.15586671823019 7.98950095266036 8.57978504142026 8.73724377660996 8.49153638202776 8.67770024468453 8.46126434215842 8.54644784448661 8.28679008068707 8.37013693350148 8.0588773271629 0.133378126851081 0.127251361402069 0.129279468603636 0.128958743659650 0.133497609536962 0.131945312882107 0.132262220295700 0.129355161264032 0.147307247324285 0.140906999627549 0.133261869597630 0.12665038228298 0.136284743468101 0.129576278956856 0.138022185564689 0.132721979122241 0.143157341276307 0.138957797464176 0.134871950041666 3 3 - 8136406 8137493 8136857.909 8136189 8137928 - gene protein_coding_gene FALSE TRUE AT3G22950.1 ATARFC1 (ADP-ribosylation factor C1); GTP binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins. similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to Os11g0586900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068170.1); similar to ARF-like protein [Dictyostelium discoideum AX4] (GB:XP_645417.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.276807856614359 3.08218288321915 0.0105554735297165 1 2.75374132147004 17.0312485833365 0.276807856614359 0.0638689640534579
AT3G50860_at 5.39095434985714 5.74523728200271 5.67838997464948 5.50222304524444 6.14811823545 5.76735383639412 6.16178542720841 6.05977926497565 3.81895000200967 3.59075215390545 4.04897848366309 4.26111123885424 4.35083203599667 4.5882452292211 4.41916063570291 4.50971326505304 4.77948580451993 3.99794956276509 3.65325628396317 0.232447549009972 0.219985957185006 0.230088976677593 0.234685235688517 0.227427619858325 0.221560229846332 0.223338569927619 0.227599744379404 0.225190254625357 0.226622050970966 0.219985957185006 0.219985957185006 0.223355553400379 0.234702737411164 0.230379535182532 0.219985957185006 0.229116281604542 0.224904571100223 0.225374313663493 3 3|0 +|/ 18913360 18914506 18913933.5 18912978 18915178 + gene protein_coding_gene FALSE TRUE AT3G50860.1 clathrin adaptor complex small chain family protein similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT2G19790.1); similar to Os03g0228400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049451.1); similar to PREDICTED: similar to CG3029-PA [Tribolium castaneum] (GB:XP_974482.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.308181955301388 3.08177972264449 0.0105630332158992 1 2.75310936631415 9.83527384960513 0.308181955301388 0.096653464828074
AT1G50575_at 5.92094152697847 6.35070675039728 5.03524258552084 5.51840891500787 5.47742907246718 5.61827047788566 7.24920112033274 7.11656758686122 5.851732166645 6.14054692463042 6.82367978817671 7.17563288550481 5.94911051644701 6.31782800833236 6.85248550139722 6.15532643493449 6.35285017119982 6.36375742493372 5.75299828120744 0.189343920488866 0.186746819787508 0.191998222713323 0.185702592994125 0.187529804218375 0.186954148060611 0.192812105463461 0.190703555651326 0.200642214362236 0.187249038336297 0.188794059407655 0.183940748497337 0.186808535449120 0.188172730761385 0.185703509412436 0.183940748497337 0.195684772681025 0.190536179942726 0.189542001707782 1 1|0 -|/ 18732530 18733121 18732798.3 18732387 18734055 - gene protein_coding_gene FALSE TRUE AT1G50575.1 lysine decarboxylase family protein similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76324.1); contains InterPro domain Conserved hypothetical protein 730; (InterPro:IPR005269) -0.331637549775278 -3.0816243449468 0.0105659481739209 1 2.75286581027817 12.2428091538614 -0.331637549775278 0.116805591648015
AT1G55850_at 8.2399865682315 8.9092933774417 9.09974133555703 9.31056319188238 9.80137605389847 9.23027191841535 5.90178178471729 6.49483083012294 7.35836547502286 6.68764631375517 5.09983895597037 4.44848309881190 5.97294665532358 6.53420778707606 4.17463215436739 7.36098874450598 6.87395003573732 6.30981940406217 6.83832295847592 0.225699242328123 0.221350340512738 0.232276472040871 0.220797289566674 0.238233175047483 0.229511593069803 0.221114279814830 0.229039073914644 0.22478370543227 0.22174764719613 0.221279043357564 0.233341506767444 0.221085362664758 0.234086748534195 0.231506918857328 0.218593951127851 0.230224412611679 0.223961249155051 0.221279564287414 1 1 + 20882539 20883054 20882749.818 20880365 20883148 + gene protein_coding_gene FALSE TRUE AT1G55850.1 ATCSLE1 (Cellulose synthase-like E1); cellulose synthase/ transferase, transferring glycosyl groups encodes a protein similar to cellulose synthase similar to ATCSLG2 (Cellulose synthase-like G2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G24000.1); similar to cellulose synthase-like protein OsCslE2 [Oryza sativa] (GB:AAL25130.1); similar to cellulose synthase-like protein CslE [Nicotiana tabacum] (GB:AAZ32787.1); similar to putative cellulose synthase-like protein OsCslE1 [Oryza sativa (japonica cultivar-group)] (GB:BAD46391.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) 0.429714211770239 3.08120796300186 0.0105737637068450 1 2.75221312449011 14.7776322676499 0.429714211770239 0.187210001315186
AT1G09230_at 5.12523407540341 5.11133490228737 5.80233717837403 5.2469113233875 4.88451345560251 4.65015242736906 6.53373948399593 5.46097224743993 4.56577396818173 4.33866864043951 3.94058681030102 3.59580491321733 4.34231742266264 4.03506599301479 3.51020651326675 3.99636537741923 4.81491758668479 4.16852920967915 4.8293710514072 0.232400503880254 0.243815000350466 0.239955028709166 0.243280323679724 0.232888492475901 0.239916307854855 0.245998986812647 0.235907136278503 0.244198188404261 0.242072030003826 0.230337584437104 0.234184404005712 0.235136471894436 0.234029707574464 0.241440272726175 0.229240956120875 0.229240956120875 0.237849733391983 0.230328116121158 1 1|0 -|/ 2979643 2980898 2980274.778 2979522 2982626 - gene protein_coding_gene FALSE TRUE AT1G09230.1 RNA recognition motif (RRM)-containing protein similar to Os03g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049993.1); similar to RNA-binding re (GB:NP_001016017.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.469652619746909 -3.08084443167065 0.0105805920106927 1 2.75164327927524 9.6661054442109 -0.469652619746909 0.212965944937567
AT3G23290_at 2.59461044238004 2.58630809752912 2.42718222470213 1.73690579187111 2.08115843022396 2.54839114434455 1.73178245714620 2.09588527300049 1.71713804926226 2.43056129466322 3.26729316150379 3.5682685661977 2.71204351457924 3.35824690037647 3.60036267331133 3.04370447548473 2.99720643051925 3.82997620605019 3.26824452839631 0.183180960638549 0.178079059671601 0.185513913771583 0.184701380831136 0.181870675190264 0.177982755227448 0.188294617810792 0.185400330080151 0.197833516761907 0.179348975467452 0.179992208522964 0.182810899610713 0.185967367679671 0.186269591951075 0.183701020932303 0.179813651952955 0.179129519627163 0.184155039007455 0.186402255364753 3 3 + 8327001 8327847 8327397.412 8326832 8328139 + gene protein_coding_gene FALSE TRUE AT3G23290.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31160.1); similar to Ribulose bisphosphate carboxylase, large chain [Medicago truncatula] (GB:ABE90860.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) 0.385709640250189 3.08071756834545 0.0105829759676139 1 2.75144441677237 5.10983749853808 0.385709640250189 0.157415810431644
AT4G21350_at 5.17805645245713 6.28118792563217 6.18709793253013 6.3004511370516 6.57864593196612 6.56198722753635 5.63751387777126 6.03508566646125 5.1570548478861 4.38427818267183 4.70133984408328 4.45235867601614 5.46408849672361 5.03309500056525 4.42819796989286 5.03458587724029 5.5268085523086 4.7108820030443 4.35597330612659 0.264833683695715 0.261975464993599 0.269640660713381 0.261975464993599 0.266000655424124 0.278511020399767 0.266322264121798 0.261975464993599 0.295233186511117 0.266407551159884 0.270391475558524 0.268958515308803 0.270158712131248 0.268192301360708 0.262572280517108 0.261975464993599 0.288756359009565 0.272854113866572 0.263327848395609 4 4 - 11356165 11356716 11356506.091 11356154 11357278 - gene protein_coding_gene FALSE TRUE AT4G21350.1 B80; binding / ubiquitin-protein ligase similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT3G46510.1); similar to putative armadillo repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03021.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.455284341806693 3.08020411870076 0.0105926300278041 1 2.75063956306319 10.8706807679486 0.455284341806693 0.203888128092041
AT3G45850_at 5.62439132727682 6.32636682738042 4.24830675314401 4.35903675266726 5.27737984898619 4.86788591226268 5.56979556617659 5.48946561567255 6.66592505344369 6.53147305707693 7.52250081177246 7.4979606421883 6.51012081669846 7.0478184190173 7.75041723797541 6.76863817721283 6.18365508683523 7.1189033101147 6.94952768935764 0.217098347950891 0.206401559102430 0.210268396236007 0.241688718536561 0.215540105469449 0.221594823581154 0.206401559102430 0.211624774397640 0.229513098145997 0.206401559102430 0.206401559102430 0.21570154301246 0.209780078599018 0.207344911015838 0.207677877045069 0.206704542196153 0.214276394669006 0.211779379917548 0.209656267090995 3 3|0 -|/ 16866822 16867599 16867172.1 16866597 16871935 - gene protein_coding_gene FALSE TRUE AT3G45850.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G36200.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G37420.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G28620.1); similar to Kinesin, motor re (GB:ABD32308.1); similar to putative kinesin [Oryza sativa (japonica cultivar-group)] (GB:AAV44208.1); similar to KRP120-2 [Daucus carota] (GB:AAK91129.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.364996318963740 -3.08003909740264 0.0105957347077235 1 2.75038088386634 12.1031504484556 -0.364996318963740 0.142617299931515
AT1G19715_at 8.48156029596926 8.21103295756775 8.77819948414982 8.57324681895258 8.8843572886581 8.42400761756662 9.69112089792006 9.3161644988363 8.8982193819204 9.4323598013118 8.87570717376741 8.8687293135335 9.09644454234181 8.75356118009353 8.272586304653 9.29269103531133 9.17341398589734 8.71035123904806 9.5308466914967 0.112705577915544 0.114296145890116 0.113378901496354 0.116622409780213 0.112187011964221 0.118609079142984 0.114337175572872 0.118091383500129 0.11837025875069 0.119484994837481 0.116540292748426 0.120598700722446 0.115484074007766 0.118053117394609 0.123895344602141 0.113935982614000 0.120970080495881 0.117235565940593 0.122147828594235 1 1|0 -|/ 6816930 6817795 6817179.8 6816693 6819533 - gene protein_coding_gene FALSE TRUE AT1G19715.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G73040.1); similar to Agglutinin (CCA) (GB:P82859); similar to Os01g0775500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044410.1); similar to Os05g0508400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055995.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.333361610826890 -3.07994046902827 0.0105975907230959 1 2.75022627858854 17.8787500099894 -0.333361610826890 0.118350255925852
AT1G17220_at 11.3388367842078 11.4561899811900 11.2141524751444 11.1820259665038 11.2626997639905 11.2065980244806 11.8416743858497 11.7255099654499 11.7068726443880 11.7858464628490 11.8566316546794 11.7760426220889 11.6378431797094 11.5818545098546 11.5530028579358 11.9136425468792 11.5584001957798 11.1536627839451 11.8075250456907 0.0835272533161773 0.0795829664092415 0.0830369208644735 0.0827249534947607 0.080943297242536 0.087364063986391 0.0820303092799307 0.0821621686679553 0.0916889116323435 0.0814921950436758 0.0800328955892442 0.0801670479917037 0.0809287886090085 0.0810515445470635 0.0821954239249928 0.0801504275767283 0.0831395847928818 0.0874524597437669 0.0795829664092415 1 1 + 5889150 5890114 5889652.636 5885076 5890410 + gene protein_coding_gene FALSE TRUE AT1G17220.1 translation initiation factor IF-2, chloroplast, putative Identical to Translation initiation factor IF-2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SHI1); similar to translation initiation factor IF-2, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT4G11160.1); similar to translation initiation factor IF-2 Small GTP-binding protein domain [Synechococcus elongatus PCC 7942] (GB:YP_401037.1); similar to Os05g0575300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056396.1); similar to Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) (GB:P57997); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Translation initiation factor IF-2, N-terminal; (InterPro:IPR006847); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.256023364380728 -3.07941964485016 0.0106073971889557 1 2.74940985457197 23.1012774657696 -0.256023364380728 0.0306875562684342
AT2G39500_at 4.78811834246611 5.07290835463505 5.16536804943212 5.10042216088179 5.23885958492062 4.99925757249582 5.02274682659604 5.0363625258898 4.56093418056128 4.64920593438835 5.03655088818209 5.14841327930785 5.13497391075047 5.10853755235153 5.26803934827768 5.12323172680943 4.96069752095736 4.69454365155377 4.73927905537242 0.205645723680013 0.206946075237888 0.214577310569570 0.215905368494355 0.210718257342415 0.210529654762851 0.209961268698491 0.205890053962867 0.20513244573468 0.211398576721348 0.206136361591478 0.210412119902626 0.209645452054816 0.204526633028458 0.214354318319751 0.204526633028458 0.206426444367981 0.215105842023949 0.206481540060737 2 2|0 +|/ 16496172 16496424 16496284.444 16496151 16496666 + gene protein_coding_gene FALSE TRUE AT2G39500.1 similar to Os01g0974800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045558.1) 0.277754962101130 3.07866968584539 0.0106215341058568 1 2.74823423544237 9.90759536460523 0.277754962101130 0.0654224066803212
AT3G25260_at 1.02343978408174 1.34549981972723 1.56329228233998 1.63584494888595 1.33851515937378 1.78418048721434 1.43689943474377 1.40979364511641 1.76785906336416 1.44932203731777 2.01480724943229 1.93513722795396 2.03095521066436 1.93916713104867 2.06037068129447 1.97484574323451 2.04333119011950 2.03707289798085 1.78265660867917 0.216214407726225 0.219494684339542 0.217847144969549 0.220906400012527 0.216214407726225 0.225424116463223 0.220936238102082 0.219553351953883 0.224861016233887 0.221292904609825 0.216214407726225 0.217978059603755 0.218535354399067 0.217316236704006 0.226699290623960 0.216214407726225 0.222142164666967 0.216214407726225 0.220529216505031 3 3 + 9202409 9202910 9202716.545 9200675 9203237 + gene protein_coding_gene FALSE TRUE AT3G25260.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G25280.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE79322.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.307199197607633 3.07805625437472 0.0106331116148114 1 2.74727262324713 3.27771993831196 0.307199197607633 0.096094258994787
AT2G19860_at 6.5967500680214 6.7803731007405 6.6081682447755 6.58403165882754 7.0277390151075 7.01274846483968 8.00861038842895 8.30117021051596 6.24016531098755 7.06587308114352 6.37486948801758 6.75454292096717 6.68036584674289 6.70730524129219 6.15691174624117 6.54457681870676 6.7867247002186 6.69542132141796 6.25605328086337 0.213460017064477 0.204153939779197 0.210090479201126 0.211469381257036 0.203254950668580 0.210372542894904 0.221333262599016 0.224368636684034 0.211813384569958 0.208568400350873 0.202437432229579 0.206556746245122 0.210284226586153 0.211870035800027 0.214845661767787 0.202437432229579 0.217871002036119 0.209931377213518 0.210255123693236 2 2|0 +|/ 8580190 8580796 8580505.875 8577832 8581082 + gene protein_coding_gene FALSE TRUE AT2G19860.1|AT2G19860.2 ATHXK2 (HEXOKINASE 2); ATP binding / hexokinase|ATHXK2 (HEXOKINASE 2) Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses. Identical to Hexokinase-2 (EC 2.7.1.1) (HXK2) [Arabidopsis Thaliana] (GB:P93834;GB:Q84WJ5); similar to ATHXK1 (GLUCOSE INSENSITIVE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT4G29130.1); similar to hexokinase [Brassica oleracea] (GB:AAL60583.1); similar to hexokinase [Brassica oleracea] (GB:AAL60584.1); similar to hexokinase [Citrus sinensis] (GB:AAG28503.1); contains InterPro domain Hexokinase; (InterPro:IPR001312)|Identical to Hexokinase-2 (EC 2.7.1.1) (HXK2) [Arabidopsis Thaliana] (GB:P93834;GB:Q84WJ5); similar to ATHXK1 (GLUCOSE INSENSITIVE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT4G29130.1); similar to hexokinase [Brassica oleracea] (GB:AAL60583.1); similar to hexokinase [Brassica oleracea] (GB:AAL60584.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) -0.27333077996004 -3.07745882084451 0.0106443994602884 1 2.74633608021834 13.6690923862981 -0.27333077996004 0.0599768516276114
AT1G14990_at 4.11529692693724 4.28076652835252 4.77459536861881 5.01135953219199 4.84269619092222 4.12298782125182 4.24499660540184 4.04343430564649 3.6593490634527 4.44716500297139 4.60222761059855 4.24651032527129 4.28443440445832 3.92794227980265 4.43254845753262 4.16561653641283 3.97135982131532 4.21403476849104 3.97970984919602 0.226042043522329 0.206523203781613 0.207743248640507 0.209749820799885 0.211859244635400 0.227727620776889 0.206400084071858 0.218671159510978 0.211811110722483 0.206771280564557 0.208595208063449 0.211858928539291 0.212299809339609 0.216494511186996 0.214062925814793 0.206400084071858 0.228646176159698 0.211770252271682 0.212842589614534 1 1|0 -|/ 5167582 5168117 5167817.625 5167142 5168238 - gene protein_coding_gene FALSE TRUE AT1G14990.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB92466.1) 0.359314553470158 3.07720227746658 0.0106492502830827 1 2.74593391739141 8.55917945026138 0.359314553470158 0.138664735403674
AT3G48420_at 9.9798133419355 9.90086319192716 9.67176022601107 9.54782057241784 10.1539858585437 9.65919689725802 10.9977992032249 10.9483156621391 10.9624530206723 11.2594568911040 11.2559755743201 11.2851522650160 10.8995935829820 11.1649750689425 11.4577833977827 11.3937095567462 10.8204890145236 11.2000236050294 11.0376767366431 0.0856491415702632 0.0794725954248653 0.0857508219440871 0.0857530213385878 0.0823059784815906 0.0835865621582252 0.0859075912495729 0.0796116638753767 0.0853960570486589 0.0811812035610426 0.0793046332011451 0.0793046332011451 0.0813310990074806 0.0849621918392067 0.0812384000310882 0.0793046332011451 0.0793331858109052 0.0811334751073442 0.0819795530241886 3 3|0 +|/ 17941363 17942505 17942107.75 17940632 17942686 + gene protein_coding_gene FALSE TRUE AT3G48420.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G39970.1); similar to Os03g0565200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050499.1); similar to Putative hydrolase [Oryza sativa (japonica cultivar-group)] (GB:AAK53865.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) -0.30016154294381 -3.07538758969352 0.0106836270254712 1 2.74308912752236 21.2430651896693 -0.30016154294381 0.0897316218580343
AT4G25640_at 9.16785961911019 9.19730276873184 9.57330805583213 9.61455196806908 9.58148427581683 9.23429537472684 9.49534612263778 9.36651407813081 8.46953567900781 8.83268375555653 8.73357367346202 9.00215027579707 9.26500277618115 9.09086903255186 8.12185750799858 9.627854563529 9.26057557865308 8.7254410205665 8.55440546939382 0.139715380541928 0.131209991913091 0.143692980348660 0.131491388871110 0.133273487883861 0.13772461402728 0.132549416462056 0.132233985209606 0.179850508849734 0.140426501774862 0.140268922195427 0.139566245512363 0.131678356853317 0.150787659369063 0.156813822129765 0.131209991913091 0.145897663276559 0.143070634965079 0.136430527707168 4 0|4 /|- 13077302 13077700 13077537.4 13076724 13079061 - gene protein_coding_gene FALSE TRUE AT4G25640.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT4G00350.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE85324.1); similar to putative anthocyanin permease [Lycopersicon esculentum] (GB:AAQ55183.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.276847428532459 3.07529801211629 0.0106853268527563 1 2.74294869938326 18.2024780436712 0.276847428532459 0.0646830526453068
AT1G21910_at 1.70674350744201 1.95996829171271 1.71551837878229 2.10263730083048 2.35844149068843 2.38217571424448 2.7693297539661 3.01558667677004 5.37964658346861 3.90439549705256 4.51133436422288 3.44516187102414 3.93334206849842 4.10149063610576 4.86469161175898 3.85747114889373 3.88053774175781 4.22845996815178 4.16192326406562 0.228000995142336 0.225826349187463 0.234759619620514 0.223307592195763 0.222851939100166 0.225112053394975 0.222255052078605 0.222255052078605 0.231636368552811 0.231318969303662 0.224532191849704 0.225829794321304 0.225903599794185 0.229184406000421 0.226930892264422 0.224519803073415 0.228476109416739 0.230831667782654 0.228111669718915 1 1 + 7696816 7697300 7697092.182 7696525 7697688 + gene protein_coding_gene FALSE TRUE AT1G21910.1 AP2 domain-containing transcription factor family protein encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G77640.1); similar to AP2 domain-containing transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16924.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.301195554115099 -3.07475429199717 0.0106956503763403 1 2.74209632106080 6.54369995155321 -0.301195554115099 0.0907819161707305
AT1G79070_at 3.0124698994554 2.67335499009264 2.67811584466839 2.59314004036739 2.69194581673943 3.05489291464934 2.28847729974136 2.31895494940457 2.29516052952670 2.19697689458769 2.65368128533853 2.48726236080507 2.74974526879965 2.56315970671726 2.91850299544098 2.83641553698902 2.85660414836763 2.53807162482233 2.3673532431221 0.181158301111952 0.173506588379739 0.173506588379739 0.179605007099127 0.176238786791397 0.181590735912579 0.173506588379739 0.179875194589481 0.178949874778867 0.180118373474521 0.178758428992527 0.177465765378753 0.180946956821124 0.179182133838337 0.173543453663663 0.181860150625497 0.179365041122417 0.179848530765407 0.176740430961890 1 1 - 29750490 29750675 29750579 29749563 29750708 - gene protein_coding_gene FALSE TRUE AT1G79070.1 SNARE-associated protein-related similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC66718.1) 0.297571423131937 3.07378111859721 0.0107141530527216 1 2.74057067994462 5.15738259688426 0.297571423131937 0.0873676358798772
AT4G02750_at 1.95552269615327 1.82714918569144 1.58752610563704 1.61092352341520 1.70250679217763 1.57036137388679 2.09172773943805 1.97681531690662 2.10827174901056 1.93435109949543 1.33874825713552 1.85774223443347 1.44838183673125 1.64086511840986 1.5902841014094 1.59762395715064 2.0866166690559 2.29244211519290 1.66989675490331 0.175928884311595 0.177483212859759 0.171788555210800 0.17568970573052 0.171788555210800 0.175579073990619 0.188715700535791 0.175121459879456 0.175459710080712 0.186006414737491 0.178567957155521 0.181416972322262 0.176581870461740 0.175450502676937 0.181741545038774 0.176256946290638 0.182023870259961 0.177923245019058 0.184336617502074 4 4 - 1221214 1221656 1221416.455 1221116 1223461 - gene protein_coding_gene FALSE TRUE AT4G02750.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G56690.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09410.1); similar to hypothetical protein MtrDRAFT_AC139526g16v1 [Medicago truncatula] (GB:ABE80147.1); similar to hypothetical protein MtrDRAFT_AC139526g18v1 [Medicago truncatula] (GB:ABE80149.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95626.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.258779725357372 -3.07306197155182 0.010727846795156 1 2.73944326034599 3.60819721032641 -0.258779725357372 0.0377935196303912
AT3G07950_at 5.49346213819349 5.49025418989726 5.49279103119999 5.37808417776059 5.9653503838355 5.23935661463137 6.0216925061704 5.10965268842941 4.22258593010915 4.6407999346583 5.79783736146613 6.24230449712224 5.51459054073907 5.39411692055441 6.00551843162332 5.37360535142859 5.55458428667772 4.56210037257556 5.05945756028 0.240846344591389 0.234380313684626 0.241704481549313 0.238379792524299 0.239088961181951 0.253521656786860 0.234380313684626 0.237393527421967 0.267542678670389 0.248360399512708 0.236229911380305 0.235054527585394 0.239460396841181 0.236149205398666 0.247016414401761 0.234380313684626 0.245663773505376 0.253366709302193 0.252076725210502 3 3|0 +|/ 2532884 2533787 2533434.5 2531858 2534510 + gene protein_coding_gene FALSE TRUE AT3G07950.1 rhomboid protein-related similar to rhomboid protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96055.1); similar to Os03g0358200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050146.1); similar to Os07g0655400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060496.1); contains domain FAMILY NOT NAMED (PTHR13377); contains domain SUBFAMILY NOT NAMED (PTHR13377:SF4) 0.452382291554225 3.07301248917233 0.0107287896716965 1 2.73936568547831 10.6220954805760 0.452382291554225 0.202706894405036
AT1G62540_at 2.55034123574364 3.19878943131189 2.14225904807924 2.00472830260869 1.50300462495495 2.02173926609325 3.82593027283554 3.71489270449076 1.95136533141894 2.69331241237604 2.78253902082079 3.10923516695322 2.83628815507964 3.26714944038994 2.76651075897772 3.48582889994061 3.16410740710168 3.16951000193952 2.57959055307877 0.211930781269635 0.217040251445097 0.218812596787142 0.221320267661396 0.216993768810761 0.212675783769246 0.210376530907838 0.225557493557860 0.222850631394108 0.213896656380727 0.216472293892462 0.210376530907838 0.217491391272676 0.223093979810326 0.221104547111755 0.210376530907838 0.210738021708231 0.224214572072554 0.210992296308322 1 1 + 23158125 23159003 23158615.364 23155459 23159382 + gene protein_coding_gene FALSE TRUE AT1G62540.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62570.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62560.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G65860.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.369999463276143 -3.0725052742352 0.0107384593819519 1 2.73857050745135 5.36057838011056 -0.369999463276143 0.146924809679395
AT2G42130_at 8.50087203614497 8.4043139805798 8.06984205040952 8.13296062275082 7.8906833614981 7.9315209437054 8.57062201884794 8.55699629464121 8.16045915056049 8.50007607090106 8.30554750303228 8.350176041521 8.25842879911282 8.25043293363273 8.65638241270929 8.59814402617823 8.31704105961507 8.05261120676548 8.39180221209826 0.129589580768949 0.135222914520198 0.131586444518422 0.123491618581182 0.129497427120642 0.135895459447439 0.130307131120327 0.140381199303977 0.134724784684235 0.135686601430841 0.126818562055269 0.123491618581182 0.130144690635291 0.131314780142132 0.132589611178325 0.124040523805995 0.132772858599366 0.126884479447110 0.130069539257808 2 2|0 +|/ 17573965 17574948 17574480.222 17573263 17575222 + gene protein_coding_gene FALSE TRUE AT2G42130.1|AT2G42130.2|AT2G42130.3|AT2G42130.4|AT2G42130.5 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58010.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69760.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58010.1); similar to Os04g0665800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054180.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69760.1) -0.252066492330793 -3.07192598801994 0.0107495138651548 1 2.73766233324059 16.6069137347426 -0.252066492330793 0.0213080688588014
AT4G25280_at 7.06033452099933 7.47364470994665 6.59040636014271 6.70627002953126 7.44710389909637 6.96366693069139 7.54539922529626 7.21698230836956 7.1772210964961 7.4346216628156 7.66884505361703 7.45631467601506 6.39019555635545 7.3135693401949 7.48982770609757 6.94890551855938 7.05367244371447 7.08781090736076 7.77333603410389 0.207314971266761 0.196181487850119 0.199983040722385 0.196181487850119 0.197792857731841 0.197646895196758 0.20517907464094 0.202876476003977 0.212541209067116 0.20022786526842 0.198894622926029 0.196181487850119 0.2030854411409 0.21093216835069 0.200374433411676 0.204329913380014 0.200997827948190 0.205276107290349 0.196181487850119 4 4|0 -|/ 12939095 12940420 12939659.125 12938966 12940754 - gene protein_coding_gene FALSE TRUE AT4G25280.1 adenylate kinase family protein similar to uridylate kinase [Arabidopsis thaliana] (TAIR:AT5G26667.3); similar to Adenylate kinase (ATP-AMP transphosphorylase) (GB:O24464); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850); contains InterPro domain UMP-CMP kinase; (InterPro:IPR006266) -0.341406000260027 -3.07150747173452 0.0107575075462456 1 2.73700620057767 14.4444104553648 -0.341406000260027 0.125487743975704
AT1G79640_at 3.52667860842788 3.34602553329021 3.26053590634928 2.93001714109781 3.81600776583632 3.60653570135355 3.00895727376526 3.13743152703028 3.62636133651908 3.31339498942156 3.71851947847605 3.52732276611441 3.48606879347856 3.79873733532249 3.92010039977991 3.59017243068176 4.24105453710939 3.60738228070267 2.98651782179346 0.257262058847475 0.256281959216954 0.257795352194315 0.260709888752484 0.278687608261653 0.26985146705966 0.266503454651744 0.267679349675661 0.266786137929711 0.256281959216954 0.263796750500945 0.260670381350261 0.256281959216954 0.261949668558101 0.259806435231987 0.264621804259988 0.256838132548389 0.262594783838839 0.256281959216954 1 1|0 -|/ 29971815 29973405 29972508.571 29971806 29975983 - gene protein_coding_gene FALSE TRUE AT1G79640.1 kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14720.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86316.1); similar to putative MAP4K alpha1 [Oryza sativa (japonica cultivar-group)] (GB:BAD19174.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.287956298247144 3.07087638399242 0.0107695727213777 1 2.73601679917285 6.85148758312025 0.287956298247144 0.0778288925812607
AT1G55160_at 7.54624082044858 7.84140732167961 7.18881318768508 7.26838025047409 8.27322307502664 8.05477101886967 7.77934621702123 7.38796578912168 7.76197137426598 6.84080935459057 8.47122162342885 7.74576299593402 7.60978751489019 7.74187520250848 7.79447497891984 7.84415874140266 7.55174129786454 7.65761036449272 7.15168597813799 0.170807288718769 0.169318270309524 0.184196505806656 0.172446467500533 0.175873190542340 0.179020084210872 0.170572039575700 0.173813283900392 0.184375474897601 0.184319944177262 0.171480506313326 0.170209275139418 0.17838491317925 0.186537279328635 0.177520139361239 0.171414776415384 0.182071849552901 0.182390002328453 0.183078270308109 1 1|0 +|/ 20582152 20583434 20582897.667 20582073 20583677 + gene protein_coding_gene FALSE TRUE AT1G55160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19530.1); similar to Os01g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043401.1); similar to Os05g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056501.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44963.1) 0.304073516772370 3.07056071187831 0.010775612894457 1 2.73552189384864 15.1943024561717 0.304073516772370 0.0938897901241056
AT3G03550_at 5.34202626482449 5.55186381927136 5.44605221512634 5.29099644886327 5.63229707017982 5.51264091601237 5.14044328266552 5.31387847051526 5.75470844369346 5.5714595435981 6.44357654787798 6.13358744247858 6.25600984533533 6.0379014014867 6.28184543392704 6.16588430136832 5.99340875208026 6.09788518132579 5.97596862584203 0.191446228146589 0.190669946315291 0.198230747996907 0.198558319191649 0.195304593321276 0.21303402700794 0.196946488967271 0.192892391348971 0.202850749964710 0.193723693260793 0.201308255545306 0.194358725364404 0.189880205896489 0.200685841830208 0.206636247037945 0.193034185431520 0.189880205896489 0.19625947932145 0.194643667551226 3 3 - 850446 850823 850634.545 850115 851597 - gene protein_coding_gene FALSE TRUE AT3G03550.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3A (ATL3A) [Arabidopsis Thaliana] (GB:Q9SRQ8;GB:Q9SS59); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G17600.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE85148.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.271163597708385 3.06947579562814 0.0107963981683392 1 2.73382096273603 11.3755954280721 0.271163597708385 0.0580369330484706
AT2G27760_at 4.12629833772792 4.21796467847013 3.70713066512052 3.85712465491867 4.14396465122824 3.80122350322677 4.28558174218393 3.92479192706534 3.95081602512488 4.19382764562345 3.95254182673188 3.91294933977640 3.70865373020232 3.8289929052926 3.65231883851607 4.09779173884450 4.06819716249997 3.76080109957388 4.49722775905655 0.202815242568823 0.207283567596843 0.220605413295862 0.200658273050927 0.208690860003328 0.207893360406102 0.219682325685395 0.204747029116637 0.203565781345551 0.206647642618165 0.202489758329944 0.211454254595346 0.201778312364992 0.205202223233236 0.210641619037871 0.20122388164147 0.213468642922499 0.204613429454655 0.202009492771521 2 2|0 +|/ 11833667 11834446 11834110.2 11831875 11834668 + gene protein_coding_gene FALSE TRUE AT2G27760.1 ATIPT2 (TRNA ISOPENTENYLTRANSFERASE) Encodes tRNA isopentenyltransferase, similar to yeast MOD5. similar to ATIPT5 (Arabidopsis thaliana isopentenyltransferase 5), transferase, transferring alkyl or aryl (other than methyl) groups [Arabidopsis thaliana] (TAIR:AT5G19040.1); similar to putative tRNA isopentenylpyrophosphatase [Ipomoea trifida] (GB:AAS79605.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) -0.301237307913437 -3.06928424524637 0.0108000721787411 1 2.73352064726198 8.05137900671669 -0.301237307913437 0.0913331463741343
AT2G28085_at 1.49471579061959 2.07117497258423 1.74917043869279 1.54490259936392 1.26003917546880 1.59375565381449 1.71160243875536 1.69909206122167 1.95232560138797 1.84360491772213 1.58398822576647 1.00946324390897 1.40623234324337 1.68512368803503 1.61413170742234 1.27331276523648 1.64456458730276 1.60427372131058 2.02527272151566 0.170043117267852 0.171569458354074 0.168002917599039 0.168586949529987 0.168002917599039 0.178377719473060 0.168176866822945 0.174935941454703 0.16854651169833 0.175829926452906 0.168035751463012 0.170422878252633 0.177649774961419 0.168002917599039 0.171931784523586 0.171841302179189 0.176124170521057 0.174808243752164 0.174500657127369 2 2 - 11975277 11975596 11975416 11975197 11975697 - gene protein_coding_gene FALSE TRUE AT2G28085.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G34760.1); similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21220.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE81082.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.334972071945275 -3.06918636631854 0.0108019500224906 1 2.73336719092216 3.34957532405852 -0.334972071945275 0.120587407412788
AT1G07370_at 3.94391242349631 4.09960430610064 3.42865242353427 3.60940940783435 2.13012736076775 2.06690219117975 3.93956832842532 4.19330025592582 3.90334940860388 3.6661679738619 4.47599580314889 5.3390040252476 3.45344445656115 4.23766705077159 5.88999763148311 3.64082663405045 3.41978268010329 4.33453569249141 3.41222971606342 0.250404322755002 0.240265159901394 0.247060805752592 0.244607943640898 0.24894115863575 0.269734160851548 0.246590025892036 0.243625155029675 0.246119235272752 0.247862953659911 0.240265159901394 0.247264103828804 0.243755711939496 0.240265159901394 0.242968477908018 0.243752492070741 0.248155655381193 0.242865650222248 0.249406390525098 1 1 + 2263405 2264322 2263938.273 2263138 2264549 + gene protein_coding_gene FALSE TRUE AT1G07370.1 PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation. Identical to Proliferating cellular nuclear antigen 1 (PCNA 1) (PCNA) [Arabidopsis Thaliana] (GB:Q9M7Q7;GB:Q9LNV6); similar to PCNA2 (PROLIFERATING CELL NUCLEAR 2), DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] (TAIR:AT2G29570.1); similar to Proliferating cell nuclear antigen (PCNA) (GB:Q43124); contains InterPro domain Proliferating cell nuclear antigen, PCNA; (InterPro:IPR000730) -0.273499551051102 -3.06830027287299 0.0108189650874753 1 2.73197794748543 7.43117914361231 -0.273499551051102 0.0612550842282701
AT3G21610_at 6.46955369035518 6.92843465558532 6.95891362815014 7.03376468699002 7.81853251929247 7.37586371739915 6.41137844957515 6.69185466769594 6.44818250767164 5.98414316455712 6.26348880925174 5.85868652133578 6.47572402974123 6.49098111819433 6.04754774931728 6.24991942192866 6.14350424055977 6.53084048165889 6.3411800709608 0.211570630132136 0.202096552775163 0.219689117127259 0.210016283049398 0.209709479232411 0.207660386863837 0.202050010032080 0.208600919619547 0.218082905789316 0.19916551916906 0.203003293455821 0.214242186860665 0.20161158872942 0.213088088772552 0.202299076090991 0.19916551916906 0.218179891706976 0.219914668095578 0.200046411164070 3 3|0 -|/ 7609373 7610574 7610078.778 7609150 7610724 - gene protein_coding_gene FALSE TRUE AT3G21610.1|AT3G21610.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) 0.335607285461827 3.06758274556589 0.0108327631459622 1 2.73085297357650 13.2187478989946 0.335607285461827 0.121236741985116
AT4G01410_at 1.16561847864224 1.20350872810036 0.86358263362738 0.892719582733408 1.66719146213664 1.49893373503302 1.46978808504935 1.95606834681473 1.97296424828231 1.58275877670297 3.15220165989132 2.96193906984178 2.82533654957542 2.81710658862521 2.93572992485007 3.00480750109147 2.05642497303231 2.47867363770652 2.33306782884499 0.241230276252774 0.240139352148862 0.246092957368422 0.238457661580549 0.234893926206633 0.245847226879034 0.241512721241995 0.234893926206633 0.234893926206633 0.234893926206633 0.235930110977533 0.234893926206633 0.234893926206633 0.240007292990242 0.236544080106775 0.23907927722454 0.243269247610521 0.244812701854402 0.23804266715274 4 4 + 578427 578957 578658.273 578165 579169 + gene protein_coding_gene FALSE TRUE AT4G01410.1 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein similar to NHL12 (NDR1/HIN1-like 12) [Arabidopsis thaliana] (TAIR:AT2G35960.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32713.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.298979073598806 3.0664547572288 0.0108544903583554 1 2.72908443495101 3.71065526786057 0.298979073598806 0.0894315608903144
AT2G21560_at 5.07008473590165 5.15467594177228 5.48732575123654 5.43427992545967 5.24194401930214 5.63949093867953 6.99222973563857 6.7471101234046 5.96391451295087 7.3991988828044 6.70951027123937 7.17551391954284 6.74681035124803 6.32152567383653 6.0265869898145 7.18506640213353 6.93159717980938 6.80191823943357 6.98089054142884 0.218227501762381 0.219068807683286 0.221276856849901 0.219215420951931 0.219058763056234 0.218413767389854 0.233608568453747 0.231802850331876 0.225061023342717 0.215034644641756 0.219225909371666 0.220592144581064 0.215858212394889 0.218215298454598 0.216837424860128 0.225036555578720 0.22966184982699 0.213567738256381 0.225108626280313 2 2 - 9237616 9238128 9237852.545 9237348 9238588 - gene protein_coding_gene FALSE TRUE AT2G21560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39190.1); similar to LOC402866 protein [Danio rerio] (GB:AAH57473.1) -0.292141746427810 -3.06631464795991 0.0108571922055540 1 2.72886475983993 12.4802180334795 -0.292141746427810 0.0826499923629793
AT1G71030_at 11.8893179087756 12.0080813786827 12.2999487204746 12.2283687575048 12.6671772366062 12.6024419939015 11.9912709602260 12.1256442811610 12.3713670392847 12.2619039634404 12.5835624139879 12.1665932611359 12.4817665079728 12.3005217385219 11.9505140446319 12.4290681504864 12.3138262447239 12.3154915383667 12.1157204341477 0.0730543824905092 0.0686830551908867 0.0706365754648174 0.0684491251602398 0.0708847070087585 0.0713847930178586 0.0703938946398814 0.0719976724059051 0.0795633816281725 0.0692665194719091 0.0699962025935226 0.0690622425962084 0.0701820624298181 0.0804051469379376 0.0710788563928826 0.068387313698806 0.0855264192192732 0.0706541981430876 0.0694744890596386 1 1 - 26799046 26799573 26799278.636 26798785 26800026 - gene protein_coding_gene FALSE TRUE AT1G71030.1 ATMYBL2 (Arabidopsis myb-like 2); DNA binding / transcription factor Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves. similar to MYB3 (myb domain protein 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G22640.1); similar to myb-like transcription factor 6 [Gossypium herbaceum] (GB:AAN28288.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.256954860048978 3.06622998966543 0.0108588250736196 1 2.72873202521791 24.5101973045512 0.256954860048978 0.0352434198929488
AT2G47610_at 9.83630780540519 9.90464751321933 9.37800790470162 9.3549230912884 9.52540917964871 9.34903948024464 10.1026235638975 10.1310198837268 9.15338999063552 9.60377477537825 9.53272195736039 9.82716200523346 9.3602571956217 9.11075267003588 10.1904044776021 9.0354823538137 8.96353514415027 9.38340117203947 9.27976676970454 0.118760706341562 0.114335548051332 0.116032770294794 0.119474907094284 0.113366710690763 0.122595917712441 0.112600507172486 0.113744512164234 0.134390419454209 0.111468624494072 0.111046273565970 0.11391378475152 0.116478325834167 0.124202533743341 0.115521845716961 0.111046273565970 0.126470590958791 0.113206411805803 0.117182622083799 2 2|0 +|/ 19537582 19538168 19537915.4 19536814 19538729 + gene protein_coding_gene FALSE TRUE AT2G47610.1 60S ribosomal protein L7A (RPL7aA) Identical to 60S ribosomal protein L7a-1 (RPL7AA) [Arabidopsis Thaliana] (GB:P49692;GB:O22250); similar to 60S ribosomal protein L7A (RPL7aB) [Arabidopsis thaliana] (TAIR:AT3G62870.1); similar to 60S ribosomal protein L7A-like protein [Solanum tuberosum] (GB:ABB72809.1); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038); contains InterPro domain Ribosomal protein L7A; (InterPro:IPR001921) -0.255992000424342 -3.06523220783055 0.0108780887601038 1 2.72716760389922 19.0833015363773 -0.255992000424342 0.0333398000395887
AT1G71500_at 11.1517887735004 11.3551473733537 11.1963709963568 11.0846308488002 10.8252932621588 10.9981280609505 11.8329889960441 12.0594059145076 11.9970234332564 11.9375444998377 12.1674071251071 12.0871498015311 11.8842907785045 11.9778997427156 11.7962148332115 12.0828789603818 11.6955327986696 11.8717884066285 11.8295398012129 0.0806193993780236 0.0795616748950908 0.0799459482260497 0.083762904535066 0.080356838806242 0.0783911167889872 0.0799868886368236 0.079336513644645 0.0813888667710556 0.0813935272852814 0.0810819457955886 0.0794851058995417 0.0798363971863038 0.082551817490852 0.0823572977512151 0.0782071142997707 0.0790847790506157 0.0793337900925245 0.0816298456631802 1 1|0 +|/ 26940099 26940959 26940534.3 26939692 26941269 + gene protein_coding_gene FALSE TRUE AT1G71500.1 Rieske (2Fe-2S) domain-containing protein similar to Rieske [2Fe-2S] domain, putative [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL51406.1); similar to Os11g0242400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067589.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.274850455605091 -3.06296882877991 0.0109219148994921 1 2.7236187701111 23.2463515535154 -0.274850455605091 0.0635789432501758
AT2G30740_at 5.29383128434162 5.83951892044151 5.10455637467137 5.11995278204093 7.06220343028455 6.09799260623227 5.84587205211917 5.6555919180958 5.56870681152021 5.80464862185255 6.21819591194016 6.83942563070603 6.13534662218434 6.77697844761918 6.4753644283661 7.05943614316157 5.98247932819131 6.3352388144232 5.99262350484592 0.230914399891221 0.218308145305272 0.238121424503899 0.239381655919178 0.217264200957018 0.225793565962922 0.217550449976303 0.225048070919431 0.230913008451678 0.22397002316329 0.217264200957018 0.217397090708798 0.217464457496026 0.228225148716256 0.218252894766438 0.223867674242483 0.224404664611151 0.224777998386832 0.220492172891827 2 2|0 +|/ 13104559 13105297 13104809.3 13103053 13105671 + gene protein_coding_gene FALSE TRUE AT2G30740.1 serine/threonine protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT1G06700.2); similar to protein kinase Pti1 [Glycine max] (GB:AAO92595.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.438310637154423 3.06273202932905 0.0109265103847583 1 2.72324747705581 11.8856738269768 0.438310637154423 0.194555399364624
AT1G60890_at 5.55343238198387 6.11587013366683 5.4443814633391 5.59615266655317 4.90180636493354 4.58873846759915 3.56249158174405 4.09981129071531 4.12401655622348 4.24515550641825 4.62634539478101 5.09212434600316 4.13301255652366 4.45810661497821 5.33436471194452 4.32381562131593 3.86591041939304 4.28739438859508 3.85873200693051 0.226882585000271 0.228023639504001 0.220344454762164 0.225971249056112 0.222234340267481 0.238179117296591 0.225391408848627 0.23351383657732 0.232997867463243 0.220344454762164 0.223175408283071 0.223149291187624 0.220344454762164 0.229230426805837 0.225488219737357 0.220344454762164 0.224149531482079 0.220429405230141 0.229985114611655 1 1 - 22416136 22417007 22416543.3 22415911 22420909 - gene protein_coding_gene FALSE TRUE AT1G60890.1 phosphatidylinositol-4-phosphate 5-kinase family protein Identical to Phosphatidylinositol-4-phosphate 5-kinase 8 (EC 2.7.1.68) (AtPIP5K8) (1-phosphatidylinositol-4-phosphate kinase 8) (PtdIns(4)P-5-kinase 8) (Diphosphoinositide kinase 8) (PIP5K8) [Arabidopsis Thaliana] (GB:Q8RY89;GB:Q9C962); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G10900.1); similar to PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT3G09920.2); similar to Os03g0701800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051005.1); similar to phosphatidylinositol-4-phosphate 5-kinase [Oryza sativa (japonica cultivar-group)] (GB:CAD27794.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) (GB:Q6EX42); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) 0.369517313539904 3.06237006194650 0.0109335387389576 1 2.72267992275708 9.27838668375816 0.369517313539904 0.147461939451108
AT3G55840_at 1.58282919802356 1.53436670324344 1.96287824719722 1.83967254642257 1.70542368758620 1.59722169174039 1.46540435689335 1.61702806007235 1.67890050613134 1.71765639233237 1.69040638037205 1.58240646660065 1.89928662365523 1.80514207006022 2.05014337783086 2.04890329086292 2.24155757792472 1.45327345898572 1.26908479670594 0.188101602993065 0.186887536458656 0.194501094888656 0.197281607586062 0.190549227053836 0.192314791784821 0.187598071228278 0.191241429792627 0.188165023062672 0.193706637165890 0.191026630332149 0.190908301639794 0.189760087288694 0.186009615200486 0.196507367738026 0.186735971855291 0.186269986990590 0.190342789575985 0.186009615200486 3 3 - 20728536 20729021 20728716.364 20727974 20729845 - gene protein_coding_gene FALSE TRUE AT3G55840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40000.1); similar to putative Hs1pro-1-like receptor [Glycine max] (GB:AAG44839.1); contains InterPro domain Hs1pro-1, C-terminal; (InterPro:IPR009743); contains InterPro domain Hs1pro-1, N-terminal; (InterPro:IPR009869) 0.258783985537541 3.06235997655498 0.0109337346333718 1 2.72266410911566 3.3639049634856 0.258783985537541 0.039548074970462
AT1G70090_at 2.75345357051204 3.32143221642239 2.60151492553962 2.68871567874173 2.24920009168064 1.90622083048209 2.73115937547434 3.17814147870342 4.27962230465936 3.04334068218864 4.81401136147867 4.07738397234902 3.41138767837698 4.73787567465104 3.28308875357291 3.44889354110532 2.07878104024391 3.37147625150460 3.88204434389954 0.223181069176014 0.223794487154891 0.220024677306521 0.235145056481195 0.227379594495824 0.223355084561722 0.220024677306521 0.238557399179431 0.233187609728285 0.224515782471948 0.234271228038307 0.221335480387520 0.222756261235639 0.23187706512053 0.231076830893793 0.220619797612676 0.226034423709152 0.220024677306521 0.224686908329412 1 1 + 26405163 26405719 26405435.727 26404453 26406060 + gene protein_coding_gene FALSE TRUE AT1G70090.1 GATL9/LGT8 (Galacturonosyltransferase-like 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL8/LGT9 (Galacturonosyltransferase-like 8), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G24170.1); similar to Avr9/Cf-9 rapidly elicited protein 231 [Nicotiana tabacum] (GB:AAG43554.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.358386969044616 -3.06235922539675 0.0109337492236962 1 2.72266293131826 6.37266213481594 -0.358386969044616 0.139266700352242
AT1G78995_at 8.45176020567528 8.3924334651799 8.22663615585682 8.0362636925748 8.7224590058977 8.5815295230651 8.2808803334495 8.09428753327741 7.59101033883454 7.52445344124069 7.95434312170814 7.98222726423627 7.67289042065847 7.97149400427456 8.07384651203418 7.56898257148225 7.92725711149403 7.81279002649495 7.1543022311477 0.172433028290638 0.170896418258715 0.168754413569942 0.168689145034831 0.176791880509866 0.17202153113316 0.165676073916882 0.177451891382711 0.166978344833569 0.173268244758954 0.163935711268511 0.163215946869831 0.163218052570931 0.17154458769536 0.164476598441887 0.162094160269702 0.183449106015730 0.167793778915525 0.170866853440412 1 1 - 29720326 29720947 29720763.364 29719972 29721004 - gene protein_coding_gene FALSE TRUE AT1G78995.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10530.1) 0.267052625963316 3.06213765244293 0.0109380538650037 1 2.72231550990106 15.9951483474331 0.267052625963316 0.0531813986143956
AT3G14630_at 1.47323671489009 1.15200868691074 1.83948320464124 1.72783008977141 1.29980949291955 1.44437862461435 1.35970783263536 1.33259915315026 1.22743205443614 1.45061991870846 1.76220320206432 1.74850991643961 1.48168654012899 1.92851267603698 1.78872591853701 1.97558741062581 2.0282431239521 1.38368435755919 1.70259875463890 0.233825236818893 0.236563629367556 0.238295746337855 0.232330425161607 0.239283240790324 0.235795773957416 0.241001667714701 0.236355805204954 0.271479656031413 0.232330425161607 0.23682935748539 0.243710203751138 0.23332042521853 0.233368982011971 0.244698573001506 0.235909571406814 0.238494184116254 0.235351272891461 0.240697198142307 3 3 + 4919088 4919391 4919245.455 4917505 4919416 + gene protein_coding_gene FALSE TRUE AT3G14630.1 CYP72A9 (cytochrome P450, family 72, subfamily A, polypeptide 9); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.275207244998429 3.06210918855456 0.0109386069755714 1 2.72227087908429 3.06481225115621 0.275207244998429 0.0641211266529103
AT3G57280_at 9.5600318093036 9.59509953070041 9.79042806473513 9.80885306062349 9.28489421861342 9.24861354813213 8.75822666432996 8.9911955111475 8.7409366876918 8.6790224159346 9.03871937198915 8.88042111122465 8.49713954379 8.71129155216542 8.87217324443482 8.500859150514 8.44061370456259 9.02066550219925 8.17862391456383 0.116730298897912 0.114093090558836 0.121915426156611 0.120447629961498 0.115247158387522 0.120425910501481 0.114340667448615 0.116038436953126 0.125769664133553 0.110931924424076 0.109820211675091 0.110398605933636 0.112114383013279 0.119401179713756 0.115611969065163 0.111394867665588 0.127180253687210 0.115718208869409 0.110709306170313 3 3|0 +|/ 21205504 21206494 21205985.25 21204759 21206695 + gene protein_coding_gene FALSE TRUE AT3G57280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20510.1); similar to hypothetical protein 11 [Plantago major] (GB:CAJ34819.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.259716617851123 3.06177292146296 0.0109451434616524 1 2.72174361754664 18.0187160027849 0.259716617851123 0.0413741803874141
AT1G01510_at 6.51870603688233 6.79204615506211 5.63009809390961 5.63295092782526 6.22558916615045 6.57709929156368 6.65669862512287 6.94789666571427 6.33456133509248 6.53503410055416 6.80161295532145 7.2471892191844 6.49687725769944 6.61209039908376 6.45953024763152 6.51734134991367 6.26724798904942 6.36332970221859 6.58746870914818 0.189896531525983 0.187484943506632 0.184231054737269 0.199666171354336 0.187610004920517 0.199023746437204 0.191484813835821 0.189483663421098 0.196898096602743 0.191433334565482 0.183084778365742 0.189614919020021 0.190928733734989 0.183543678382163 0.185739454166651 0.185152262375474 0.203153708450223 0.200036335579955 0.189273688154002 1 1 + 189031 189645 189327.182 187211 190056 + gene protein_coding_gene FALSE TRUE AT1G01510.1 AN (ANGUSTIFOLIA) Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to angustifolia [Ipomoea nil] (GB:BAC58020.1); similar to Os10g0533000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065152.1); similar to Putative C-terminal binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19105.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.301219079542654 -3.06117228201201 0.0109568287440854 1 2.72080181808213 12.9133058394177 -0.301219079542654 0.0920739653809323
AT2G28880_at 2.9662407166438 3.08742253904879 3.05528982419118 3.25652540839681 3.53334463639699 3.13875766948468 4.31721459041861 4.28036480714249 4.2695189222972 3.68673999699695 4.05354284795598 3.76718549675595 3.49912416746973 4.27668437384012 3.44186959798641 3.82764308636503 3.35276652652515 3.96672395881382 3.84572119113372 0.218796163611068 0.208765382077183 0.215856800839187 0.223865322056922 0.213939497866343 0.210526010581894 0.210166666148278 0.208496593997698 0.214960125557409 0.210434085778735 0.213229871619884 0.209175339649205 0.209868170016173 0.213074408801494 0.220855204699741 0.208496593997698 0.218124093187498 0.218853969249020 0.214385427354046 2 2 - 12406048 12406655 12406331.273 12405822 12410605 - gene protein_coding_gene FALSE TRUE AT2G28880.1 EMB1997 (EMBRYO DEFECTIVE 1997); catalytic/ ligase/ oxo-acid-lyase similar to ASA2 (anthranilate synthase 2), anthranilate synthase [Arabidopsis thaliana] (TAIR:AT2G29690.1); similar to aminodeoxychorismate synthase/glutamine amidotransferase [Lycopersicon esculentum] (GB:AAR83121.1); similar to putative aminodeoxychorismate synthase/glutamin amidotransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD54000.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Carbamoyl-phosphate synthase, GATase region; (InterPro:IPR001317); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998); contains InterPro domain Anthranilate synthase component I, N-terminal; (InterPro:IPR006805); contains InterPro domain Para-aminobenzoate synthase, component I; (InterPro:IPR005802); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain Anthranilate synthase component I and chorismate binding protein; (InterPro:IPR005801) -0.288816070937304 -3.06098948038321 0.0109603876042438 1 2.7205151845267 7.30798796251874 -0.288816070937304 0.0797249849301305
AT4G13270_at 7.2975872755535 8.22887649609445 8.29547077745343 8.43833674562882 8.688289059837 8.01014669742552 8.02381021293376 8.1905950968246 6.90264873090777 6.31942205537205 7.06436681732013 7.11841850708926 7.23015117181276 6.90763396228017 6.74647850493577 6.94210870121939 6.67449066855671 6.85287134895209 6.16697534218976 0.250945873639154 0.239813624339389 0.252980350686216 0.248581977068403 0.2418094184873 0.257721107970411 0.239813624339389 0.239813624339389 0.242643349723319 0.250481050686271 0.239813624339389 0.239813624339389 0.245156701121865 0.250965979694847 0.247793296371847 0.242164258861647 0.282233247727813 0.243074366090161 0.246893066419498 4 4 + 7731287 7731819 7731535.909 7731185 7733197 + gene protein_coding_gene FALSE TRUE AT4G13270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52330.1); similar to Os03g0696000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050978.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO19373.1) 0.45094656692444 3.06065408607083 0.0109669202429726 1 2.71998928323786 14.8491792134325 0.45094656692444 0.202954431083478
AT2G22890_at 1.86365544257153 2.29845908884665 1.75963276160197 1.50813629085723 1.38143068378218 1.56144967862549 1.73071872514257 2.20972706815004 1.97097677321494 2.3686616994803 1.69786448550305 2.21526110028748 2.22359072210282 1.77477867279025 2.07352684562210 2.29390331306845 2.06029002503474 2.34163344962889 2.52697101748172 0.190941171407659 0.197700734385538 0.196824770873087 0.198289634002923 0.191588213994859 0.197584434361625 0.197059436533353 0.189505897393686 0.187667513194905 0.189210395044508 0.196160363008253 0.185986828285705 0.189480439712906 0.189803193758419 0.190882023474773 0.189758674939634 0.190164772920448 0.190252388771702 0.192025589081731 2 2 - 9749586 9750095 9749877 9749473 9750427 - gene protein_coding_gene FALSE TRUE AT2G22890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27030.1); similar to Os08g0187900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061153.1); similar to Ubiquitin-conjugating enzyme (ISS) [Ostreococcus tauri] (GB:CAL55480.1); contains domain UBIQUITIN-CONJUGATING ENZYME VARIANT 1 (PTHR11621:SF1); contains domain UBIQUITIN-CONJUGATING ENZYME E2 (PTHR11621) -0.338370740382621 -3.06013659621562 0.0109770073677661 1 2.71917784968638 3.97613917085406 -0.338370740382621 0.124088824275226
AT1G62380_at 10.9213727870933 11.0039240245450 10.2575997789614 10.3943454942918 10.9527017845058 10.6880672338725 11.0228724858969 10.9763869753079 11.2678708127557 11.3944505429913 11.677479332305 11.7919842918729 11.3749406685800 11.3167549916107 11.3526171261563 11.3400498637294 10.7318578373811 11.1054185033114 11.7275105625513 0.0744960054968335 0.0741849526289112 0.0741849526289112 0.0756628339528248 0.076993694656283 0.0812439403593399 0.0765929927479836 0.0751734314899335 0.0802853228324431 0.0752311845104273 0.0776940073469804 0.0759619086313131 0.0741849526289112 0.0766894995510322 0.0784234202054725 0.0741849526289112 0.0820959949946544 0.0785027407568485 0.0749254327916598 1 1 + 23087105 23087697 23087420.636 23085835 23087918 + gene protein_coding_gene FALSE TRUE AT1G62380.1 ACO2 (ACC OXIDASE 2) Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene. similar to 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G12010.1); similar to ACC oxidase [Brassica oleracea] (GB:CAA57284.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.267424987266984 -3.05918233654367 0.0109956327882693 1 2.71768153782807 22.1769913870432 -0.267424987266984 0.0540934791737242
AT2G04039_at 10.5494292323021 10.4284179310279 10.5976588048787 10.6003650232436 10.8217803140187 10.3344823155733 11.9710203304484 11.5389690957629 11.2486269431654 11.4779476641916 11.3540553384970 11.1929416212128 11.0996357644587 11.2911451898135 10.9674927326026 11.4542838203530 11.2754297643318 11.2471361948326 11.3385222856348 0.0748666979875088 0.0747092612604148 0.0762209131939483 0.0767825654781571 0.0748740092274605 0.0797798321614831 0.0787436358957281 0.0749778152063735 0.0839987283240877 0.0782691938322725 0.0786245416792327 0.0751890585713565 0.078631325046682 0.0775782274836562 0.0784418929696797 0.0752796952607695 0.0769681379578571 0.0773825846515521 0.0747092612604148 2 2|0 +|/ 1333480 1334382 1333976.667 1333259 1334563 + gene protein_coding_gene FALSE TRUE AT2G04039.1|AT2G04039.2|AT2G04039.3 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84849.1) -0.326577388678986 -3.0591252043739 0.0109967489177509 1 2.71759195200394 22.1504140563703 -0.326577388678986 0.114632050337124
AT1G42480_at 6.39458010744198 6.66167762607071 6.61209054039837 7.13813222053188 5.98257429674012 5.95927237508375 5.41408914584126 5.82708183525362 5.26756038695287 5.16319739035683 5.59594462354719 5.6750903653258 5.36222747694547 5.57984523336335 5.68811669230516 5.22780638172306 4.97806642862953 5.3714904466175 4.88592779690915 0.225035259397864 0.229724342274323 0.221999435171108 0.228456745629146 0.217291237445836 0.241479928026922 0.217291237445836 0.221051008204342 0.232205685917627 0.225619559841251 0.225913967715489 0.22565026731353 0.220448225491525 0.22809850676393 0.221550939043025 0.223250798803178 0.229504275998968 0.230194200676092 0.222868199595185 1 1|0 +|/ 15938755 15940950 15939643.556 15938670 15941303 + gene protein_coding_gene FALSE TRUE AT1G42480.1 similar to Saposin B [Medicago truncatula] (GB:ABE83256.1); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886) 0.338960888760412 3.05858764963660 0.0110072561533623 1 2.71674903844336 11.5188799254852 0.338960888760412 0.124691484477864
AT3G11450_at 7.95501230479713 8.27696855000767 7.4212069452616 7.9084034701391 8.18882551314194 8.07916861390331 7.7474532432963 8.06401985802573 7.52950618848737 7.90970466940463 7.28973194795794 7.557987086639 7.01427750818162 7.19076676780636 7.32298589451038 7.28326151372722 7.36115135610428 7.3415663142855 8.08470216397324 0.203260495752233 0.203752872846853 0.204744024542940 0.200256847157245 0.203588793960358 0.205318829729833 0.203102820258886 0.202443143456361 0.234594190645797 0.193195874552915 0.200339352128033 0.195697461379310 0.215875284372565 0.206610496059961 0.200952933789362 0.192927221183502 0.207747300435816 0.214176203367593 0.198708207928028 3 3 - 3605530 3606040 3605730.909 3605226 3607483 - gene protein_coding_gene FALSE TRUE AT3G11450.1 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT5G06110.1); similar to gonidia forming protein GlsA [Lilium lon (GB:BAC77346.1); similar to DnaJ domain, putative [Medicago truncatula] (GB:ABE90980.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.328775322695213 -3.05840304725471 0.0110108667973368 1 2.71645957095404 15.5233925069582 -0.328775322695213 0.116507737919647
AT1G54390_at 7.1060440471134 6.97685941305217 7.00643991622055 7.36213228543546 7.78146348393543 7.31437852360464 7.07948929685122 7.13730909691063 6.63010120125361 6.18552319453201 6.10671872073086 6.84214624050086 6.64336929839492 6.83626129113667 6.67297944449759 6.67780464124421 6.84486478176197 6.75168892332556 6.18655621671437 0.202408774973242 0.197601930583281 0.207320971950851 0.209849116159521 0.201450289566032 0.197261583726446 0.207339308991765 0.198580431668428 0.208572851548099 0.198534980037391 0.208655734676594 0.197818842361292 0.212216319807747 0.198128099108848 0.204340642506624 0.201905234704994 0.203739140799676 0.201234119400313 0.206207867663008 1 1|0 -|/ 20308798 20310102 20309206.25 20308234 20310691 - gene protein_coding_gene FALSE TRUE AT1G54390.1|AT1G54390.2|AT1G54390.3|AT1G54390.4 PHD finger protein-related similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G24010.1); similar to PHD-finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98871.1); contains domain INHIBITOR OF GROWTH (PTHR10333); contains domain ING-RELATED (PTHR10333:SF11)|similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G24010.1); similar to Os03g0748200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051266.1); similar to PHD-finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98871.1); similar to putative growth inhibitory protein [Oryza sativa] (GB:AAL58962.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.314548526174792 3.05786212066007 0.0110214536929803 1 2.71561136175843 13.7235341938233 0.314548526174792 0.104510865132129
AT4G35950_at 6.41471775483446 6.43252598644577 5.56463692312305 5.65796677501552 6.20788114168877 6.2364279508425 6.53050933475287 7.09644850508182 7.16796795013815 6.94814755794354 7.3507576693538 7.69991763600524 6.68709125989363 7.22152259063527 7.55332940380694 6.91501089859589 6.7029858942693 6.94957011692158 7.03597917087905 0.185582379284878 0.181276445967208 0.191641976043801 0.18787916354654 0.188453701435812 0.180742356018990 0.180894078998333 0.184086130136617 0.192435963854648 0.187173539538849 0.191961382757110 0.181263957952346 0.187666124600818 0.182787825056136 0.178338037580867 0.180671776278995 0.195198135667186 0.182279109498578 0.191838524916013 4 4|0 -|/ 17024059 17025477 17024629.444 17023840 17025866 - gene protein_coding_gene FALSE TRUE AT4G35950.1 ARAC6/AtROP7/RAC2 (rho-related protein from plants 7); GTP binding A member of ROP GTPases gene family-like. GTP binding protein Arac6. Identical to Rac-like GTP-binding protein ARAC6 (GTPase protein ROP5) (ARAC6) [Arabidopsis Thaliana] (GB:Q9SBJ6;GB:O65632); similar to ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) [Arabidopsis thaliana] (TAIR:AT2G17800.2); similar to putative ROP family GTPase [Brassica napus] (GB:AAO11654.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.308748620123156 -3.05698699700473 0.0110386032111732 1 2.71423909596314 13.3605000014758 -0.308748620123156 0.0994318637193494
AT4G38360_at 8.66689264582947 8.50824812440305 9.00447173267716 8.69850927020414 9.08524108351163 8.74563231366715 8.64137490016599 8.15438731952025 7.0807123693208 7.116815443134 7.0903969635802 6.88671939407521 7.56592300672966 7.2864019970902 6.96534981542186 7.255708246101 7.47052990725748 7.61145897049741 6.7861507653832 0.203810122875357 0.204848294970603 0.210748732911582 0.213434411411413 0.203781839338465 0.209676699857651 0.204769053445136 0.211798099897208 0.210135289382887 0.205586517213008 0.208209327627941 0.207352585234303 0.203781839338465 0.218287635779305 0.209934799621463 0.203781839338465 0.216846581513001 0.211085419708226 0.209127408722966 4 4 + 17968231 17969137 17968669 17967101 17969952 + gene protein_coding_gene FALSE TRUE AT4G38360.1|AT4G38360.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77220.1); similar to Protein of unknown function [Medicago truncatula] (GB:ABE78441.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77220.1); similar to MAP kinase activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61807.1); similar to Protein of unknown function [Medicago truncatula] (GB:ABE78441.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.331369682091733 3.05641809156765 0.0110497663322057 1 2.71334699680725 15.8186549555174 0.331369682091733 0.118800751524567
AT2G41500_at 6.12115754964144 6.15655195059067 6.11522812453372 6.03894933483258 6.61820032453006 7.04221161194096 5.5874476871692 5.42619677095339 4.58996442048201 5.1974237213703 4.55244453911286 4.81168648397883 5.19724956474801 4.95962687218014 5.01762422518068 5.56434558677789 5.61073157439265 5.41168872311277 5.79648865304963 0.213238094889273 0.212284449241965 0.209747196458573 0.214332693071525 0.215043427075936 0.21291333994868 0.211511074957543 0.214825765672569 0.216715274320717 0.211412379240427 0.212724644469929 0.209747196458573 0.225520254255055 0.214854007623235 0.212791932678848 0.211809588350990 0.221967751138476 0.211389915340664 0.214176241121425 2 2|0 -|/ 17311462 17312112 17311789 17311208 17314504 - gene protein_coding_gene FALSE TRUE AT2G41500.1 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Identical to U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis Thaliana] (GB:O22212;GB:Q7GAP3;GB:Q7Y1Z3); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G05720.1); similar to hypothetical protein LOC508735 [Bos taurus] (GB:NP_001029502.1); similar to Os03g0355200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050132.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Splicing factor motif; (InterPro:IPR003648) 0.288428978627742 3.05571371219100 0.0110636035468646 1 2.71224245189375 11.3058930665171 0.288428978627742 0.0798415495115029
AT4G12980_at 9.28108471762352 9.5895843844768 9.23985167898543 9.08877852450234 9.70893067461643 9.45645558196422 10.8337109555955 11.0350338823346 10.1603415993553 10.3116638050476 10.5759062123990 10.4846589359618 10.8942127055970 10.6564240858301 10.2657450940356 10.8245704900770 10.2836756814572 10.0319407749623 10.3408994344838 0.102162561610800 0.096562393780720 0.104745921848869 0.102820841394128 0.0980943133182408 0.104403303852641 0.101829696285162 0.0983976876410999 0.109612751002413 0.101925443888464 0.096562393780720 0.096562393780720 0.0985411675733527 0.107992208371502 0.106326651036727 0.096562393780720 0.122483002143318 0.107747848559388 0.0971323635917655 4 4|0 -|/ 7589676 7590427 7589994.8 7589392 7591099 - gene protein_coding_gene FALSE TRUE AT4G12980.1 auxin-responsive protein, putative similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G25290.2); similar to hypothetical protein 26.t00022 [Brassica oleracea] (GB:ABD65002.1); similar to Os03g0194900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049254.1); similar to Os08g0524200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062286.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.290087951039697 -3.05557423346752 0.0110663456199198 1 2.71202373256910 20.1657338135968 -0.290087951039697 0.0815874716001442
AT2G41590_at 1.22169851463979 1.20499094928180 1.15971922853161 0.944941454194064 1.06287120626720 0.834423405619750 1.29158161996202 0.88288976023529 1.81258126265615 1.63887358380501 0.971213109881143 1.32144028665136 1.70133240138766 1.04350589046678 1.0651976236452 1.20262989174977 1.30392111198624 1.67484307241167 1.74168609204047 0.214202975358903 0.211268531850789 0.213070786207068 0.217437707323707 0.211316778581596 0.215644819286268 0.218268313996131 0.212318850706280 0.212128252603222 0.212869166107784 0.218793268559674 0.214942992280987 0.211268531850789 0.221431108525857 0.216185176823601 0.211863869638479 0.215405828687093 0.214492324926097 0.220990721352411 2 2 + 17351185 17351642 17351378.727 17350438 17352083 + gene protein_coding_gene FALSE TRUE AT2G41590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25200.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain Positive stranded ssRNA viruses (SSF88633) -0.297668971677318 -3.05556264287396 0.0110665735153613 1 2.71200555711351 2.58366821885295 -0.297668971677318 0.0891905116950484
AT3G61760_at 1.81571254433057 1.93945302965652 2.18278357787302 2.26234032940701 1.46574341392758 1.70632217314031 1.38992902603916 1.61257041672977 1.74499949792304 1.46637936129850 1.94157314182778 1.89334794704322 2.21828240761280 2.02200829206944 1.71567599638072 1.82466699405127 1.87954773681261 1.94776725056892 1.58586337633933 0.18885284137481 0.188504755306029 0.180640719574211 0.180860864062190 0.185026599142081 0.196510527120066 0.187478738597070 0.18971565516696 0.185979407923593 0.187472746161096 0.180640719574211 0.183211016457194 0.186567452227757 0.183729551771637 0.180640719574211 0.185089862059588 0.182819437059912 0.186713677625935 0.187270906447506 3 3 - 22871603 22872283 22871914.727 22871489 22875128 - gene protein_coding_gene FALSE TRUE AT3G61760.1 dynamin-like protein B (DL1B) Identical to Dynamin-related protein 1B (Dynamin-like protein B) (DRP1B) [Arabidopsis Thaliana] (GB:Q84XF3;GB:Q9M362); similar to ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN), GTP binding [Arabidopsis thaliana] (TAIR:AT5G42080.1); similar to ADL1C (DYNAMIN-LIKE PROTEIN 5), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G14830.1); similar to ADL4/ADLP2/DRP1E/EDR3 (DYNAMIN-LIKE PROTEIN 4), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT3G60190.1); similar to phragmoplastin [Nicotiana tabacum] (GB:CAB56619.1); similar to SDL5A (GB:AAC49183.1); similar to SDL (GB:AAB05992.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.273079547503429 3.05555914464189 0.0110666422988912 1 2.71200007146107 3.56157654687939 0.273079547503429 0.0621765713920634
AT1G48140_at 6.9611245095247 7.08827372817425 6.76253546853668 6.87307342981656 6.79890432023332 6.86736936247984 5.85034347485725 6.37200310116397 5.3616820678664 5.82850150364669 5.99114578120572 5.93123528654602 5.91706353146964 6.31193979159821 5.86350219772753 5.9882657343008 6.08580013113972 5.27459000851606 5.51777969030856 0.198635253830858 0.195492068572782 0.201111625220601 0.195492068572782 0.206039652417276 0.208800533733082 0.201232567014425 0.203270392904480 0.213188034636882 0.204244057580077 0.195492068572782 0.205756080726595 0.195492068572782 0.203849184780204 0.213865914486652 0.204087989139901 0.195623981555147 0.199183049105935 0.195702361857448 1 1|0 +|/ 17787093 17787541 17787275.5 17785711 17787880 + gene protein_coding_gene FALSE TRUE AT1G48140.1 dolichol-phosphate mannosyltransferase-related similar to unknown [Vitis vinifera] (GB:AAP30738.1); contains InterPro domain Dolichol-phosphate mannosyltransferase subunit 3; (InterPro:IPR013174) 0.304328081187816 3.05458858295535 0.0110857425397279 1 2.71047810311925 12.4415853718917 0.304328081187816 0.0956041727424758
AT3G62060_at 1.80330994205551 1.92167159045274 1.65699983703518 1.41433957793403 1.70644943486745 1.73967337848193 1.82278446939239 1.87151627407318 1.85627142363187 2.23758930723881 2.00102760508660 1.85716828609555 1.73349771426642 1.91356969791494 1.77630200547982 2.15421840181799 2.10728258784016 1.63060979162103 2.49717828142769 0.204365886913661 0.215186750032927 0.209040330835987 0.204812424570435 0.204083883794101 0.20822986620578 0.200247990817747 0.207058542870818 0.199659674736708 0.198858195516515 0.204613369885422 0.200103877830057 0.200345777551454 0.203588257548015 0.208022151140692 0.19829159133846 0.210380622401995 0.212665866427913 0.199820623800934 3 3|0 +|/ 22992623 22993662 22993271.556 22990930 22993919 + gene protein_coding_gene FALSE TRUE AT3G62060.1 pectinacetylesterase family protein similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT2G46930.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34283.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.262879252373976 -3.05448863326282 0.0110877113982649 1 2.71032136775101 3.78895432071894 -0.262879252373976 0.0478245261104759
AT3G07990_at 4.67462270769787 4.67151430534446 4.01641522342461 3.96794946878771 4.64539631028808 4.76279774251628 4.71708970844523 4.8516601566483 4.64708570060002 4.36951796960828 6.31008195882634 5.61744852627414 5.39045190647873 5.28518581438829 5.94645321057032 4.94845288676841 5.04219782656647 5.85792725290443 4.96397216593642 0.205539973770180 0.206886345069089 0.206267486716451 0.203727429369332 0.210003744614971 0.212101288620054 0.212819327738924 0.204769660985737 0.218507976781369 0.202419161383342 0.201225241323659 0.201133993850006 0.212232985834206 0.203746401660447 0.206008926899103 0.201133993850006 0.210006808465956 0.201133993850006 0.201133993850006 3 3|0 +|/ 2553730 2554590 2554190.7 2552483 2554927 + gene protein_coding_gene FALSE TRUE AT3G07990.1 SCPL27 (serine carboxypeptidase-like 27); serine carboxypeptidase similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to putative serine carboxypeptidase II [Oryza sativa (japonica cultivar-group)] (GB:AAV43957.1); similar to Os01g0833500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044713.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.254500472092886 3.05428652411848 0.0110916937240966 1 2.71000443116722 9.64341413700843 0.254500472092886 0.0320272212344448
AT1G21720_at 9.56598856313985 9.82222729438562 10.1139632367825 10.2256259169334 9.87645020489867 9.8249021997804 9.49444194889144 9.73248297079215 9.34544233864611 9.15764087610266 9.53215919936024 9.31867500672618 9.3859023090252 9.59113272014193 8.94465737237514 9.46138642729777 9.36882048703785 9.39704653877733 9.04439602240901 0.130516084670239 0.129015522614916 0.13301415730945 0.139663795455432 0.131900807315072 0.129288559720196 0.140347372988143 0.129015522614916 0.146694050921567 0.13928252794625 0.134247658529567 0.135585440274772 0.134525443228755 0.136556950917803 0.156362601398319 0.130405930376882 0.136611141526951 0.143733042220546 0.135272819737633 1 1 + 7626563 7627864 7626979.273 7626272 7628251 + gene protein_coding_gene FALSE TRUE AT1G21720.1 PBC1 (20S proteasome beta subunit C1); peptidase 20S proteasome beta subunit PBC1 truncated protein (PBC1) Identical to Proteasome subunit beta type 3-A (EC 3.4.25.1) (20S proteasome beta subunit C-1) (Proteasome component T) (PBC1) [Arabidopsis Thaliana] (GB:Q9XI05;GB:O23707;GB:Q8LEA7;GB:Q8VZC4); similar to PBC2 (20S proteasome beta subunit C 2), peptidase [Arabidopsis thaliana] (TAIR:AT1G77440.2); similar to 20S proteasome, A and B subunits [Medicago truncatula] (GB:ABE79860.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.274464811918289 3.05351848096131 0.0111068403099217 1 2.70880001994016 19.1107430852731 0.274464811918289 0.064158150430195
AT4G02480_at 8.51609991610102 8.51283543747671 8.47442407021718 8.52118460396477 8.72258618854972 8.5664246446956 8.2333778837893 8.17870188994468 8.12987090294357 8.15287647218081 8.60483590748204 8.56622986182145 8.62175783845296 8.3482582219611 8.29331078470271 8.55052739298355 8.63511741540306 8.00785199732495 8.18949637805297 0.140699612731418 0.140820963307938 0.140997756540675 0.138531455062616 0.143841524444837 0.144728329528776 0.140147781313529 0.141810197225117 0.145819940479882 0.14692834582504 0.137097376433609 0.135878123306064 0.136536719097257 0.140662886629594 0.14270436772176 0.135799216998653 0.142776784761660 0.138276583253257 0.145008535777059 4 4|0 -|/ 1082084 1086323 1083627.643 1081759 1088846 - gene protein_coding_gene FALSE TRUE AT4G02480.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G62130.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G02890.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G24860.1); similar to AAA-type ATPase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95244.2); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85040.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85038.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain SMAD/FHA; (InterPro:IPR008984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.253486344076461 3.05346091787899 0.0111079763536203 1 2.70870975157965 16.7711547102968 0.253486344076461 0.0297599164502691
AT3G27420_at 4.89118398927153 4.33364398340647 4.35583709641432 4.43748553008447 4.85067431200236 4.63046688099136 3.7821116910817 3.64118810396197 3.16926707894499 3.64528648401929 3.92936631272295 3.80862277519272 3.72141934556698 3.65742993955947 4.25519858449896 3.57646796249453 3.32493603463579 3.27446741247322 3.58064127481615 0.229031700935724 0.22805627153055 0.231538381740615 0.229285109670626 0.231272351588716 0.246523693833335 0.226662858118957 0.240235394050368 0.239848332808514 0.238725369973257 0.229460952930706 0.232598887420119 0.230997919264797 0.226662858118957 0.230495178075349 0.226662858118957 0.240186172614794 0.231299483191383 0.234001506442704 3 3|0 +|/ 10150510 10151343 10150763.875 10149822 10151538 + gene protein_coding_gene FALSE TRUE AT3G27420.1 similar to EMB1875 (EMBRYO DEFECTIVE 1875) [Arabidopsis thaliana] (TAIR:AT5G40600.1) 0.31750380645449 3.05318031352967 0.0111135159388577 1 2.70826971693744 7.94460069431172 0.31750380645449 0.107498583951544
AT3G46560_at 9.31083482597015 9.08848301859955 9.10619097081766 9.16044904053334 9.13689720329294 8.58681778168019 9.61402022113084 9.46383955615186 8.75343290553756 8.92138130740144 8.67182314824263 9.05589048908458 8.51728673493782 8.69792838667157 9.01129868600074 8.29100949894004 8.58317083117574 8.46259530680287 9.09078993797706 0.132937091051156 0.130253062511462 0.138750968885839 0.13335000329352 0.132194599098703 0.138806729464116 0.131300375346118 0.130840329897550 0.145304300801802 0.135739815539046 0.132847436584740 0.135010909769330 0.137878557094806 0.134017134587816 0.136869566563473 0.134189146371222 0.137623560095212 0.130452300591133 0.131009873009516 3 3|0 +|/ 17149627 17150253 17150032.1 17149572 17150497 + gene protein_coding_gene FALSE TRUE AT3G46560.1 TIM9 (EMBRYO DEFECTIVE 2474); protein translocase Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Identical to Mitochondrial import inner membrane translocase subunit Tim9 (TIM9) [Arabidopsis Thaliana] (GB:Q9XGX9;GB:Q8L927;GB:Q9SNC2); similar to small zinc finger-like protein [Oryza sativa] (GB:AAD40019.1); similar to Os12g0571200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067084.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) -0.316099160727714 -3.05266315560984 0.0111237327904484 1 2.70745872245542 17.9750632950407 -0.316099160727714 0.106330208275994
AT1G68370_at 6.96341870732553 6.99072311601772 7.32304298815552 7.0679202671372 7.01504361999603 6.75460607032382 7.16439546359759 7.03571217239504 5.7662605529795 5.94523742926311 6.71718893282414 6.77169122648541 6.9398342655845 6.81960929967273 6.00826169947543 6.7664600222965 6.06813680320048 6.1581732898429 6.22635322186285 0.242945622295863 0.244655767965575 0.248651733581263 0.242478860615450 0.241426094918749 0.252563541620446 0.242519347104759 0.248582524265961 0.25779824691731 0.244935610135912 0.245517171917932 0.245609810352444 0.242348752977284 0.243546767616298 0.256474629779754 0.241426094918749 0.256104423183761 0.245006937326158 0.253949349589517 1 0|1 /|- 25635861 25636549 25636232.875 25635408 25638401 - gene protein_coding_gene FALSE TRUE AT1G68370.1 ARG1 (ALTERED RESPONSE TO GRAVITY 1) DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins. Identical to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) (AtJ15) (AtDjB15) (ATJ15) [Arabidopsis Thaliana] (GB:Q9ZSY2); similar to ARL1 (ARG1-LIKE1), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G24120.1); similar to Os01g0512100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043176.1); similar to ARG1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37859.1); similar to Os02g0741100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048078.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.276738289645057 3.05236383070951 0.0111296505195476 1 2.70698932594134 13.2945843891808 0.276738289645057 0.0670729694883784
AT4G28180_at 2.42823682177973 2.4716891209865 1.35538047429698 1.26461318134239 1.92174228324691 1.96485583784271 1.99680066065598 1.99265477850692 2.17022819617760 1.76092986877357 2.21072861323232 1.87618161666948 2.14781985455257 2.12317697541474 2.67238445913312 1.46026569409291 1.48581295483630 1.93037768709137 1.74560051904342 0.211384607907140 0.205379776561551 0.211306814904142 0.211919442745725 0.210492738149590 0.213447567326671 0.206126956751115 0.212758275591953 0.217982681964184 0.212562704065780 0.215251282120826 0.211431487107532 0.205379776561551 0.207990640009751 0.210084754701615 0.219845568140333 0.207801248530604 0.20919424592929 0.216633547539932 4 4 - 13982917 13983475 13983269.364 13982802 13983723 - gene protein_coding_gene FALSE TRUE AT4G28180.1 similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38560.1); similar to CK25 [Nicotiana tabacum] (GB:ABE01833.1) -0.249803390376857 -3.05223619099318 0.0111321749564954 1 2.70678916283154 3.86479481643696 -0.249803390376857 0.0189593770164667
AT1G32970_at 1.60162954609789 1.59095273065544 1.03393473634853 1.75825763157005 1.18603827668595 1.37008388298387 1.71553582560404 2.10863976174441 2.04643314745624 2.43336566835713 1.76851856868452 1.72350836249649 1.86877102726839 1.84362706047902 2.21181939196982 1.85200644981793 1.88232035725292 2.11039738512889 2.19021373347137 0.190856259280948 0.189109313787729 0.202622310881747 0.18839348783169 0.191752548248374 0.188991897499334 0.201006014463586 0.184846137761744 0.182237690519084 0.184720833483492 0.185759001651350 0.184190279130662 0.188203889946047 0.190188793520313 0.187111149989021 0.182422229371385 0.185872706031504 0.195003250090252 0.192120650952150 1 1 - 11948718 11949269 11948956 11948701 11951962 - gene protein_coding_gene FALSE TRUE AT1G32970.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32950.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259) -0.366413637584673 -3.05160663801038 0.0111446346174034 1 2.70580190040453 3.61111334486902 -0.366413637584673 0.146142705643105
AT3G22630_at 8.88931868312914 8.88940057496863 9.2401772464825 9.27181828543316 8.82057992090668 8.62592172555595 8.56522453863717 8.72704897983402 7.89119436676805 7.87773718376831 8.27907948889854 8.42803274371157 8.15973429683347 8.12385303378756 8.4376349762376 8.20766737390442 7.76084970416139 7.88795831622923 7.81608122974179 0.182614173106931 0.173694655653673 0.182886352937560 0.184333258106030 0.175538283474800 0.182079903763923 0.180264296248522 0.177832995248637 0.188500681573616 0.188193968403230 0.175002747811975 0.175509434152762 0.179993559367818 0.187271099557539 0.177881528393483 0.177959833316708 0.186738001426361 0.177526132397465 0.183587188978246 3 3 - 8009737 8010732 8010138.273 8009547 8010851 - gene protein_coding_gene FALSE TRUE AT3G22630.1 PBD1 (PROTEASOME SUBUNIT PRGB); peptidase Encodes 20S proteasome beta subunit PBD1 (PBD1). Identical to Proteasome subunit beta type 2-A (EC 3.4.25.1) (Proteasome subunit beta type 4) (20S proteasome beta subunit D-1) (Proteasome component GB) (PBD1) [Arabidopsis Thaliana] (GB:O23714); similar to PBD2 (20S PROTEASOME BETA SUBUNIT 2), peptidase [Arabidopsis thaliana] (TAIR:AT4G14800.1); similar to 20S proteasome beta 4 subunit [Triticum aestivum] (GB:AAU82106.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.260403207706710 3.05143407455059 0.0111480523295762 1 2.70553128569783 16.8898223286083 0.260403207706710 0.0441476404273828
AT2G18350_at 4.03726033374964 4.00824982482162 3.28899686780441 2.84925421995311 3.88055161129191 4.00466328930381 3.13719127639821 2.8686227355966 2.52947071556017 2.47195886552433 2.88573584965811 3.48323591766273 3.27059448670565 3.59972678791239 3.39835713770451 3.03523998219822 2.93456049845785 3.56445039513729 2.99211272619166 0.211387735732666 0.221269662342550 0.208452976093626 0.218794828842809 0.205777047231096 0.213018612726355 0.207005483692356 0.216931233043949 0.226598402090619 0.205777047231096 0.216170192207595 0.216713155384411 0.220845955253178 0.215177043895255 0.212429765632789 0.20686097714726 0.205777047231096 0.205777047231096 0.211703879156533 2 2 - 7978400 7978777 7978591.909 7978099 7979163 - gene protein_coding_gene FALSE TRUE AT2G18350.1 ATHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24); DNA binding / transcription factor similar to ATHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G75240.1); similar to ZF-HD homeobox protein [Flaveria bidentis] (GB:CAC34447.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) 0.3000044919755 3.05113789865198 0.0111539207215546 1 2.70506682008087 6.4773496370424 0.3000044919755 0.0918573072602771
AT1G28090_at 2.86128156988605 2.33823144996359 2.68668183155639 2.73864749905524 2.68531114299423 2.85862127023564 2.31313507289223 2.06614725321819 2.34372108707922 2.30611881916465 2.86558555158855 2.98672476753471 1.98107356333511 2.71270955378405 2.79111492119925 2.7339603037006 2.44928635682029 2.33836366412158 2.33027608749931 0.226136070192207 0.222588578204591 0.230800691238833 0.229355891621132 0.233269083007889 0.235709783652142 0.224545791301285 0.227522503121837 0.225609416656698 0.231748143401163 0.223506834714214 0.226831075698871 0.235872993086614 0.223325737872286 0.222292918203888 0.222292918203888 0.22338385326151 0.224591250744714 0.222292918203888 1 0|1 /|+ 9798133 9798554 9798339 9795749 9799050 + gene protein_coding_gene FALSE TRUE AT1G28090.1|AT1G28090.2|AT1G28090.3 polynucleotide adenylyltransferase family protein similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G23690.1); similar to Os03g0131400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048863.1); similar to Putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:AAM22707.1); similar to Os04g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052662.1); contains InterPro domain Poly-A polymerase/tRNA nucleotidyltransferase; (InterPro:IPR012222); contains InterPro domain Nucleotidyltransferase/Poly(A) polymerase; (InterPro:IPR012277); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646)|similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G23690.1); similar to Os03g0131400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048863.1); similar to Putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:AAM22707.1); similar to Os04g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052662.1); contains InterPro domain Nucleotidyltransferase/Poly(A) polymerase; (InterPro:IPR012277); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646) 0.314131801741577 3.04968249846492 0.0111828032249822 1 2.70278442350138 5.03553596947931 0.314131801741577 0.104883296763402
AT3G60300_at 9.61871381066351 9.72398263328494 8.96969607944131 9.12079327805559 10.0154125135544 9.8814566753243 8.48787415345756 8.73029257449094 10.2921641324372 9.8685962889933 9.62664713823479 9.36849667675837 9.33508730995784 9.5444831587115 8.69516799432346 9.34653447729748 8.27553502932528 9.03517140434574 9.98360719400014 0.112542473737436 0.112116471657994 0.115776431509325 0.115362927416007 0.115832084316837 0.115154328684407 0.116453979648432 0.111059182724098 0.115202759363309 0.110977652905271 0.115171464549331 0.111290680845485 0.110977652905271 0.114284967876347 0.111448338783664 0.113509050785264 0.141614129776504 0.119404476040511 0.112089762267838 3 3|0 +|/ 22297619 22298284 22297984.778 22296286 22298454 + gene protein_coding_gene FALSE TRUE AT3G60300.1 RWD domain-containing protein similar to RWD domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94379.2); contains InterPro domain RWD; (InterPro:IPR006575); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.269054148118956 -3.04957661719996 0.011184907391444 1 2.70261837610206 18.9192841833321 -0.269054148118956 0.057557977514623
AT3G07210_at 2.54005982060955 2.78211296088256 2.46039667768321 1.98448862619813 2.89194289359523 2.53387021341956 2.96839136000314 3.71604942345039 3.51827512524255 3.15416392077719 3.26603839362939 3.38986981250128 2.92071013890742 2.82931593312713 3.6463041721075 2.82223972392609 2.76858740027035 3.09644485053234 3.40732243810641 0.240288974956986 0.232887873080871 0.249188969783589 0.236862336855323 0.223026181194813 0.232067439589384 0.232392555188961 0.229023551032705 0.232290674968287 0.240199515944352 0.222712780686622 0.23881898154082 0.231490968686672 0.228725529543156 0.241392829930974 0.226249741580551 0.228029880518604 0.237460235144957 0.231095951794255 3 3 - 2293022 2293568 2293372.636 2292804 2295458 - gene protein_coding_gene FALSE TRUE AT3G07210.1 similar to Os08g0528800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062315.1); similar to Os01g0917200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045199.1); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.400730240047952 -3.04933006857543 0.0111898085748871 1 2.7022317274504 5.96084364589717 -0.400730240047952 0.170639868350713
AT1G08520_at 10.4345155354145 10.3365048414646 9.74853686554143 9.68519533556927 10.2966167541147 9.9698774282806 10.4637676986507 10.3664270541299 11.0504853025788 10.7785982283368 10.9085633674298 11.0953945284051 10.5453689932024 10.7586720089916 11.0730126200095 10.7221323241578 10.3487976348097 10.8779252065845 10.7538233787047 0.0883120788226607 0.0859862181826588 0.0949920019711025 0.0892531293489322 0.0902157835180412 0.0928188012484737 0.0895794557062937 0.0865521672683375 0.0964358897390023 0.0922249023216157 0.0863494969713785 0.0873502906462854 0.0948989646620626 0.0887234531396617 0.089941085288615 0.0859862181826588 0.0980963219711834 0.0908512852931319 0.0876177204667883 1 1|0 +|/ 2699874 2700782 2700318.4 2696415 2700962 + gene protein_coding_gene FALSE TRUE AT1G08520.1 CHLD/PDE166 (PIGMENT DEFECTIVE 166); ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding Identical to Magnesium-chelatase subunit chlD, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (CHLD) [Arabidopsis Thaliana] (GB:Q9SJE1;GB:Q9SWY5); similar to CHLI1 (CHLORINA 42), magnesium chelatase [Arabidopsis thaliana] (TAIR:AT4G18480.1); similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (GB:O22437); similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (GB:O24133); similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (GB:Q9SJE1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Magnesium chelatase ATPase subunit D; (InterPro:IPR011776); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Magnesium chelatase, ChlI subunit; (InterPro:IPR000523); contains InterPro domain Magnesium chelatase, subunit ChlD; (InterPro:IPR012174) -0.272491410481541 -3.04737481254217 0.0112287543725978 1 2.69916536493555 20.9887813418069 -0.272491410481541 0.0623602267743438
AT1G47230_at 3.07821254048139 3.40782415249135 3.31542258971286 3.37140665008923 3.22101123301907 3.87320845965871 3.43009616979854 3.46067014727051 3.04561334294139 2.90317990914298 3.60476988242748 3.77016154854145 3.05778147799596 3.43319758438972 3.81623399739731 3.55151503667382 3.72266103226225 3.34500219380229 2.92402438344585 0.229564118216453 0.230526012572106 0.229956186058408 0.228203446931489 0.236013255634879 0.223790192744336 0.225626780410832 0.236784006564837 0.232759670079342 0.236832749809428 0.224692168509626 0.226137951685321 0.234983810488731 0.238807089146704 0.227917732229984 0.227136050330526 0.231584009576199 0.227793150365818 0.228915089401315 1 1|0 +|/ 17309993 17310979 17310424.4 17309014 17311288 + gene protein_coding_gene FALSE TRUE AT1G47230.1|AT1G47230.2 CYCA3;4; cyclin-dependent protein kinase regulator similar to CYCA3,2, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT1G47210.2); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670)|similar to CYCA3,2, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT1G47210.2); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.340560473142865 3.04730682103419 0.0112301111236581 1 2.69905873480076 6.64236710416339 0.340560473142865 0.126941702844768
AT1G79000_at 8.2282616232902 7.9415454842141 8.19469864153625 7.92298803709934 8.70827928839009 8.18082479323191 8.3130865101641 7.62128098917761 7.1099699551317 6.60735089079139 7.4225005665696 7.42861358094222 7.64500456428031 7.28298566193342 7.2350918372029 7.92452618587178 7.622253058188 6.76293705141998 6.85072624574415 0.181178797205910 0.182210903222526 0.181150567960578 0.176148959741852 0.187891191093783 0.179499906171757 0.181410593048770 0.179980564327394 0.199213251527085 0.181571290129981 0.185124996763803 0.180209443466416 0.18080262363073 0.178217499786737 0.187869489057724 0.176970119050344 0.190828965251200 0.192372128442547 0.188029374959006 1 1 - 29722054 29722613 29722364 29721243 29728859 - gene protein_coding_gene FALSE TRUE AT1G79000.1 HAC1 (P300/CBP acetyltransferase-related protein 2 gene); transcription cofactor Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity Identical to Histone acetyltransferase HAC1 (EC 2.3.1.48) (HAC1) [Arabidopsis Thaliana] (GB:Q9C5X9;GB:O64548); similar to histone acetyltransferase 5 (HAC5) [Arabidopsis thaliana] (TAIR:AT3G12980.1); similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to histone acetyltransferase 4 (HAC4) [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) 0.392563702215757 3.04545293320065 0.0112671688148247 1 2.69615127431343 15.2746230511497 0.392563702215757 0.165340660672104
AT4G17215_at 2.19768568653231 2.76432052989080 2.38286762556519 2.69384638325352 2.8883777922245 3.000760380241 1.75929267068307 2.20808356678257 2.82459146739897 2.41047851042359 2.54719611295435 2.47101755805992 2.75138586129442 2.95168992559974 2.49163181263269 2.78519352413421 3.01929733239787 2.26426334884079 2.14900213128000 0.193963079584642 0.199868235904828 0.193686966422699 0.204146360827967 0.200335627719352 0.199273667173322 0.194947847310123 0.200239095370885 0.192776518533693 0.201235142129711 0.195495941393736 0.192776518533693 0.192776518533693 0.197993174329957 0.193994835713084 0.197688159038614 0.200791683823817 0.207337452451732 0.201683762760648 4 4 + 9655997 9656398 9656263.727 9655848 9656588 + gene protein_coding_gene FALSE TRUE AT4G17215.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47635.1); similar to hypothetical protein 40.t00006 [Brassica oleracea] (GB:ABD65131.1) 0.353984748318631 3.04414247149582 0.0112934383665681 1 2.69409603227136 5.04768773149167 0.353984748318631 0.137556791315858
AT4G28270_at 8.87473990806852 8.83708154271508 8.8598790349945 8.92440147632602 9.35490393516731 9.19798069584966 8.71877274922472 8.83618687766683 9.02400163243 8.86917449928648 7.94962172125728 7.51707771894041 8.25589343062686 8.39341023403814 7.3567812923211 8.8796002724847 8.49303579509971 8.38746098876518 8.90527000721288 0.158608320019911 0.150289524074836 0.148617006277880 0.162121228925171 0.153826569938681 0.156486302010558 0.148208710509415 0.14869371891073 0.155016571055704 0.142241907303944 0.152685924135005 0.161325043534607 0.147288933766919 0.152904932505980 0.167272520887237 0.142241907303944 0.159561665648807 0.150591745595055 0.146827161959966 4 4 - 14007621 14008132 14007873.455 14007545 14009025 - gene protein_coding_gene FALSE TRUE AT4G28270.1 zinc finger (C3HC4-type RING finger) family protein similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to ring domain containing protein [Capsicum annuum] (GB:AAR99376.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.255554590892929 -3.04352207486997 0.0113058964242848 1 2.69312303180178 17.4939560581690 -0.255554590892929 0.0362970672487632
AT1G78280_at 6.61414390505609 7.12979197450405 6.72176320753317 7.3197551650543 7.02131608284218 7.22502756341961 6.32277434987532 6.36839737341544 6.38164075804316 5.8738774355306 6.3607382289833 6.64065375330419 5.88202760446405 6.15494186847052 5.83589437692586 6.7579126525171 6.87732889439425 5.90597236414946 5.88706386719807 0.217031680591162 0.216185655648054 0.232021804100824 0.217194758910001 0.220498600922648 0.227126329740409 0.224645146266444 0.217485318417285 0.237886299870362 0.222158599002943 0.220472211016338 0.216185655648054 0.222486468314018 0.225203152960382 0.22722518295449 0.216185655648054 0.227583299703241 0.220871825917416 0.221929941469322 1 1|0 +|/ 29461085 29461985 29461489.556 29457448 29462266 + gene protein_coding_gene FALSE TRUE AT1G78280.1 transcription factor jumonji (jmjC) domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06550.1); similar to hypothetical protein DDBDRAFT_0190735 [Dictyostelium discoideum AX4] (GB:XP_646466.1); similar to Os03g0389900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050272.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347) 0.358797484155036 3.04219525873826 0.0113325865579824 1 2.69104209288917 13.0151017384584 0.358797484155036 0.141340974707312
AT1G16460_at 9.34727797673741 9.3801689880780 9.66158599419418 9.625524193355 10.1573856583603 9.8837713257474 9.36136013975622 9.16753462745577 9.34862592010983 9.30921007377752 9.456881070009 9.06887268320824 9.15947547176337 9.47935116593135 9.41606505405593 9.4343311552959 9.32031038866398 9.21667455616256 9.2381273615458 0.113423242490803 0.103563828152309 0.109712394809664 0.110828165778661 0.110608077385827 0.112714313483437 0.109424819591880 0.104726568732054 0.112718678312752 0.108738280615443 0.104366042199426 0.109424137225850 0.110230462891525 0.109245591852768 0.103913078332729 0.105362587423595 0.106038869049942 0.112023341792710 0.107959566103859 1 1|0 -|/ 5619858 5620899 5620377.8 5619576 5622657 - gene protein_coding_gene FALSE TRUE AT1G16460.1|AT1G16460.2|AT1G16460.3 ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); thiosulfate sulfurtransferase encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. similar to ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G79230.3); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307)|similar to ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1), thiosulfate sulfurtransferase [Arabidopsis thaliana] (TAIR:AT1G79230.1); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307) 0.269161050616303 3.04178300541818 0.0113408923670318 1 2.69039552051136 18.8819009354342 0.269161050616303 0.0586385722977551
AT2G19610_at 0.821147738067692 0.884764189074766 1.14845129828781 1.03682445421902 1.01787435449413 0.93133791297298 1.00916240973622 0.813963649336146 0.737522202744137 0.798266518930204 1.26622711121564 0.714373601347995 1.27331487810464 0.869128415652339 1.10024351090799 1.01519001883264 1.26703462787398 1.28423120458257 0.660598393996238 0.198293681749253 0.201556094747171 0.194583785300173 0.195811515578428 0.194290750402877 0.202931803761977 0.201240116489424 0.198916185867652 0.202929390300923 0.207460394037750 0.19511946963809 0.195372731279086 0.197857881784580 0.2003146286659 0.2040994864386 0.197860322836680 0.197385583555752 0.205126976061723 0.197685426326409 2 2 + 8492210 8492739 8492467.455 8491067 8493110 + gene protein_coding_gene FALSE TRUE AT2G19610.1|AT2G19610.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G07640.1); similar to Zinc finger, RING-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85921.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.258975695473820 3.04156827001172 0.0113452211500772 1 2.69005873126361 1.87336423058439 0.258975695473820 0.0431245544867138
AT1G27900_at 5.34973979160094 5.09838163237776 6.18697227919603 5.75041154478328 5.62963887331065 5.92638019850406 5.50469097316072 5.33806840628135 4.23001911423451 4.51866438529907 4.51176633995346 4.55352358954402 4.69117010203744 4.17791870753829 4.63169458905071 4.67645960239397 5.03313686910118 5.04846842132297 5.01777824349839 0.225377414873032 0.220552611923983 0.22916909135109 0.224745004510033 0.220552611923983 0.230681989341811 0.22070362481631 0.223510969870953 0.225530490304853 0.233508523256718 0.226626660872139 0.223356644889270 0.229046146535405 0.221025775388506 0.224026386606783 0.220552611923983 0.226304298028427 0.230304269980661 0.230344149183648 1 1 - 9715619 9716574 9716028.455 9715440 9720555 - gene protein_coding_gene FALSE TRUE AT1G27900.1 RNA helicase, putative similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92900.2); similar to Os11g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067756.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.313663609850206 3.04156753607037 0.0113452359482299 1 2.69005758015459 10.2252043917161 0.313663609850206 0.105205948427579
AT1G63690_at 8.43852529494621 8.73336137654882 8.74861464200768 8.72112663353718 9.71602415647435 9.32005525690454 8.87159473918144 8.7809862964221 9.22279166182503 8.8242409740756 9.43465752784409 9.36872828543775 9.42668991115248 9.47433498094442 9.2593736426932 9.36756295644757 8.75973616060779 9.2500866910788 9.32781056512297 0.112295167254488 0.114845776418596 0.113209449154654 0.112505097191188 0.112623154494958 0.121941172825754 0.115568990043764 0.114364957704049 0.112970732788125 0.119062321893516 0.111532501999463 0.112487573663003 0.109324925861661 0.114597048890587 0.115876931665019 0.109266195006190 0.116970309628984 0.112881931150988 0.112695338891242 1 1 + 23624565 23625709 23625236.909 23622041 23626059 + gene protein_coding_gene FALSE TRUE AT1G63690.1|AT1G63690.2 protease-associated (PA) domain-containing protein similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G01650.1); similar to growth-on protein GRO10 [Euphorbia esula] (GB:AAL14629.1); similar to putative growth-on protein GRO10 [Oryza sativa (japonica cultivar-group)] (GB:BAD22919.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.294018390653764 3.04100129713047 0.0113566585986827 1 2.68916949165302 18.1250830511029 0.294018390653764 0.0869907711359836
AT3G53090_at 6.20056700337023 6.4986723290665 6.2896966597161 6.66206037504057 6.80360974237675 6.30174486063504 7.00548214508215 6.55209083852406 6.163670798295 6.39510612829074 5.29803287383257 5.27770237993253 5.41282478349336 6.16967763507301 5.0342747410017 6.10851756711644 5.39944868604675 6.06146318315544 6.2442518981332 0.242976550098183 0.244163152035441 0.253019613846099 0.261698349043620 0.252172880494447 0.268123285864415 0.247357298480025 0.244753545825903 0.255702389869437 0.250107775459179 0.248128564492402 0.256846519535085 0.242976550098183 0.242976550098183 0.257451352223548 0.248514157506842 0.257341510664109 0.253117373879289 0.243047105340691 3 0|3 /|+ 19694586 19695225 19695002.25 19690186 19696338 + gene protein_coding_gene FALSE TRUE AT3G53090.1|AT3G53090.2 UPL7 (ubiquitin-protein ligase 7); ubiquitin-protein ligase encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. similar to UPL6 (UBIQUITIN PROTEIN LIGASE 6), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G17205.1); similar to putative ubiquitin protein ligase [Oryza sativa] (GB:AAK14420.1); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.361179356634228 -3.04094214466859 0.0113578525420347 1 2.68907671666701 12.4706999972828 -0.361179356634228 0.143223364288513
AT1G32750_at 7.13427653308437 7.8554587944574 7.0780087343775 7.26238423866503 7.31763304464116 7.32171229499734 6.48663532532282 7.20711050346114 7.8437971895713 7.693149951479 7.03294534268626 6.84301295384978 7.01016018339856 7.29461380478967 6.72131598813513 7.69294275589289 6.75101087773643 7.15088178126853 8.34464240327274 0.202995266634324 0.200440060712440 0.215201179046908 0.202793457234679 0.201407498431752 0.218748810347721 0.208214106566284 0.205610693592471 0.210775746280558 0.200440060712440 0.208334110321779 0.202654752158296 0.215894544508363 0.201826983156483 0.211124996969485 0.204550514853941 0.21915030413254 0.205965271425453 0.200440060712440 1 1 - 11846416 11846973 11846666.364 11846227 11856241 - gene protein_coding_gene FALSE TRUE AT1G32750.1 HAF01 (Histone acetyltransferase TAFII250 family); DNA binding Identical to Transcription initiation factor TFIID subunit 1-A (TAFII250-A) (AtTAF1a) (HAF1) [Arabidopsis Thaliana] (GB:Q8LRK9;GB:Q9LPI9); similar to HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY), DNA binding [Arabidopsis thaliana] (TAIR:AT3G19040.1); similar to putative HAC13 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37451.1); contains InterPro domain TAFII-230 TBP-binding; (InterPro:IPR009067); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.412177549024598 -3.04017680797836 0.0113733116640580 1 2.68787635352724 14.7192225881645 -0.412177549024598 0.179276555360351
AT4G24450_at 6.99993319789311 6.70606741277902 8.5228804310961 8.19450587178804 8.19023805109185 7.39844308423453 7.61665632641124 7.11434746886771 4.43979324962647 6.83416673629876 5.14343629581183 4.48422653854425 5.45069439750009 5.47146894057922 3.14797714109229 5.92664140651279 7.18687203332546 5.56341779275717 5.04513936649490 0.225213498145932 0.223678609400050 0.224570247841380 0.231009193337720 0.231867542210995 0.234414895063781 0.222338857857869 0.222952213411799 0.236287744951627 0.228356720275105 0.222710265709721 0.233217290072223 0.224562010210371 0.23033207180172 0.249495866586918 0.222338857857869 0.229958923724791 0.23144387552305 0.222338857857869 4 4|0 +|/ 12641871 12642608 12642196.8 12635436 12642807 + gene protein_coding_gene FALSE TRUE AT4G24450.1 ATGWD2/GWD3/PWD (PHOSPHOGLUCAN, WATER DIKINASE) Identical to Alpha-glucan water dikinase 2 precursor (EC 2.7.9.4) (GWD2) [Arabidopsis Thaliana] (GB:Q9STV0;GB:Q84W86); similar to SEX1 (STARCH EXCESS 1) [Arabidopsis thaliana] (TAIR:AT1G10760.1); similar to starch associated protein R1 [Solanum tuberosum] (GB:AAK11735.1); similar to Alpha-glucan water dikinase, chloroplast precursor (Starch-related R1 protein) (GB:Q9AWA5); similar to Alpha-glucan water dikinase 2 precursor (GB:Q9STV0); contains domain Glutathione synthetase ATP-binding domain-like (SSF56059); contains domain PHOSPHOENOLPYRUVATE DIKINASE-RELATED (PTHR22931); contains domain no description (G3D.3.30.470.20); contains domain ALPHA-GLUCAN WATER DIKINASE, CHLOROPLAST PRECURSOR (PTHR22931:SF1) 0.412203896095103 3.04015163915855 0.0113738204126506 1 2.68783687827426 12.9611547817229 0.412203896095103 0.179296692407972
AT1G24450_at 6.2377447754342 6.64612729638618 6.41873612186635 6.21583950289762 7.6264175857447 6.7354102911808 6.25957659474648 6.15654765499803 5.54458443821132 5.11737319250669 5.91173353007321 5.45025973229607 5.80871127588384 6.34550681597463 5.20203117974255 5.41239948528335 5.21199554823448 5.5076713079365 5.00180798911663 0.235703322233853 0.233576094677985 0.248712051743985 0.234419333506957 0.239543146484487 0.244906681920913 0.242658401764931 0.237235020746030 0.256542601467360 0.239001108455622 0.234282346208272 0.238845820700352 0.235319839686185 0.249190610661695 0.242738172854823 0.243164865088188 0.250421268073176 0.242676312186934 0.241947021417964 1 0|1 /|+ 8664389 8665030 8664726.3 8664141 8665277 + gene protein_coding_gene FALSE TRUE AT1G24450.1 NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III similar to hypothetical protein Os03g63740 [Oryza sativa (japonica cultivar-group)] (GB:AAO66545.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) 0.404567598923838 3.03985967116027 0.0113797237721887 1 2.68737894932123 11.9508218859266 0.404567598923838 0.174128793122403
AT1G72190_at 7.08569198824761 6.78416964734832 6.55330881124146 6.56971811507139 7.40921413110118 6.76996662090445 6.85609009220716 6.56549093681697 5.65881967879797 5.88932411732296 4.8251067374965 5.07208990101425 5.57271163470129 5.49929203260213 4.53998207647572 5.26950966127359 5.42689814238119 5.02384407969595 6.00010742683177 0.243473440227240 0.238015638616055 0.243028090692349 0.236289369005771 0.238353756709813 0.245998737547845 0.239159543306913 0.236298984951188 0.257526162297506 0.238638987804751 0.239063567595225 0.233059360975561 0.243001240440406 0.240840140157482 0.247863009943543 0.238025643254790 0.240912027445549 0.235169156465562 0.243224301409476 1 1|0 -|/ 27171315 27172185 27171603.556 27171025 27173379 - gene protein_coding_gene FALSE TRUE AT1G72190.1 oxidoreductase family protein similar to FDH (FORMATE DEHYDROGENASE), NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G14780.1); similar to Os07g0264100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059330.1); similar to phosphoglycerate dehydrogenase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31969.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.346523268843941 -3.0393974070548 0.0113890767118026 1 2.68665392116336 12.3257544716286 -0.346523268843941 0.132278782615164
AT3G17910_at 4.81997571011985 5.0665498170966 4.49089874847863 4.5403954383316 3.67098754826676 4.23608016981261 4.13803653850833 4.51253366906445 3.74409413660359 3.49366916001915 3.29698368436939 3.58885268135742 3.26690819807237 3.34899731725645 3.24816319429857 3.72760804051415 3.70841650065566 3.75733747010323 4.06606915415922 0.223600720412102 0.212852333737357 0.21943310385683 0.212101954981528 0.213619923272206 0.215055166646276 0.216777339229211 0.211274165996291 0.211283588215986 0.214028495567442 0.213648256007857 0.2117591997629 0.211274165996291 0.213539336491363 0.218301063819244 0.213732143558676 0.216582012661132 0.212548520820228 0.211513470325786 3 3|0 +|/ 6134682 6136005 6135565.9 6133534 6136377 + gene protein_coding_gene FALSE TRUE AT3G17910.1 SURF1 (SURFEIT 1) Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly. similar to cytochrome c oxidase assembly protein surfeit-related [Arabidopsis thaliana] (TAIR:AT1G48510.1); similar to PREDICTED: similar to Surfeit locus protein 1 [Tribolium castaneum] (GB:XP_972868.1); similar to Os03g0200700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049291.1); contains InterPro domain Surfeit locus 1; (InterPro:IPR002994) -0.337359610953578 -3.03915785812459 0.0113939265329244 1 2.68627820433036 8.06485847300438 -0.337359610953578 0.125130188130954
AT3G46340_at 2.27042009113163 2.14618620653691 2.03428674567571 2.32245827252651 1.82351026148528 2.10129078804672 1.775060544747 1.94357505666023 2.37557656758734 2.92259630906191 2.23500928050314 2.16545877141473 1.86280552522230 2.09487988920365 1.99987022974639 2.1341218012993 1.97278399262966 1.89650167535320 2.65799063003179 0.222670421062243 0.218112716849746 0.218626611706241 0.220337722383796 0.220969520156660 0.218112716849746 0.222847212857226 0.222462896692500 0.224414849891530 0.220288258880117 0.232184448492486 0.219964519065685 0.218112716849746 0.224219730097145 0.221614583641912 0.218112716849746 0.22065745557202 0.225735941691735 0.224607059772319 3 3 + 17042144 17042797 17042535.727 17037643 17042827 + gene protein_coding_gene FALSE TRUE AT3G46340.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G46420.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46350.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46400.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.285149782195429 -3.03757564186753 0.0114260119359574 1 2.68379657636262 4.40071519480053 -0.285149782195429 0.0781693967061334
AT1G72240_at 2.71603607066408 3.3452125124376 4.52933374210067 4.92005923664107 3.43054065136959 3.19458081380067 3.13736191798622 3.15377395883247 2.98600994979676 2.5917576488816 2.58592716431405 2.35704062161133 2.54912706797312 2.29138238730603 2.27538350684349 2.16758922327064 2.52454024928551 2.54745800818709 2.35559685786373 0.233135630809099 0.233251319867050 0.237709968045536 0.251461661780684 0.237070395320731 0.233135630809099 0.234850647328791 0.237649744426855 0.251088204172942 0.233996961261114 0.234854141761483 0.233510609370640 0.233135630809099 0.242588531119551 0.233682930055012 0.237775882196254 0.253363549660097 0.240949781828585 0.241525754840252 1 1 + 27193923 27194210 27194047.7 27193841 27194411 + gene protein_coding_gene FALSE TRUE AT1G72240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22470.1) 0.349191852874727 3.03692816749434 0.0114391682162187 1 2.68278103230484 6.08174278670218 0.349191852874727 0.134546613093604
AT4G24440_at 8.32817263496975 8.37303371188004 8.31817468520456 8.57016308251403 8.40062945115853 8.17000132881776 7.906324269538 8.26636700171542 7.2540263825255 6.85878274780694 7.9012156342004 7.86259130450987 7.54755785017995 7.3764676333813 8.03838583601156 7.39177753970023 7.17530542996718 6.87040155254654 7.13051771827372 0.173181394160387 0.169694341643895 0.178553562104377 0.175883004589974 0.169081053564749 0.178878925910036 0.175698797748737 0.17394514347696 0.175514538119812 0.179251619106536 0.173556677891919 0.175145403665362 0.170897477619583 0.187432674666481 0.175616850065612 0.173764421685493 0.180548172797917 0.177591121967811 0.172075963626152 4 4|0 +|/ 12633470 12634531 12633756.625 12633190 12634770 + gene protein_coding_gene FALSE TRUE AT4G24440.1|AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) Identical to Transcription initiation factor IIA gamma chain (TFIIA-gamma) (TFIIA-S) [Arabidopsis Thaliana] (GB:Q39236;GB:O49348); similar to Os05g0107700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054426.1); similar to transcription initiation factor [Plantago major] (GB:CAJ38374.1); contains InterPro domain Transcription initiation factor IIA, gamma subunit; (InterPro:IPR003194); contains InterPro domain Transcription factor IIA, helical; (InterPro:IPR009083); contains InterPro domain Transcription factor IIA, beta-barrel; (InterPro:IPR009088) 0.29281081521233 3.03630687205776 0.0114518069384982 1 2.68180654236102 15.5923941692735 0.29281081521233 0.0862379797888543
AT4G17250_at 2.77428133114939 2.96604789593798 3.09369667508718 3.28834635821301 3.87180662235997 3.55621948793295 3.34228636939298 2.69027940594613 1.96426835318334 1.88856299241227 2.04136068550756 1.79136430636053 2.02323988742974 2.20870519277519 2.11264680261638 2.09602786863678 2.23484324063703 2.25569683401456 1.87193750679466 0.214249819548886 0.205910283682136 0.211305837236221 0.209329192742368 0.212501982341239 0.208196687275145 0.219410848296994 0.210916585480403 0.219952753314275 0.209901535894075 0.210126793734816 0.21345618832042 0.215995627131769 0.216351517128024 0.214682564072718 0.213831143888191 0.211359036970739 0.212652204082567 0.205692711568646 4 4 + 9671774 9672319 9672104.909 9671101 9673430 + gene protein_coding_gene FALSE TRUE AT4G17250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47580.1); similar to hypothetical protein 40.t00008 [Brassica oleracea] (GB:ABD65133.1) 0.348261426704393 3.03529405392938 0.0114724404601943 1 2.68021794253784 5.1997414614411 0.348261426704393 0.133977310681841
AT1G04140_at 8.41020059852823 8.5852706892207 8.02077036373877 8.418650812958 8.60027195251692 8.51207459934646 8.1194876852173 8.28518920204175 7.84617197571277 8.0210935628239 8.63774331418791 8.56934414264455 8.66385298900993 8.61455063930823 8.37903750489345 8.67361959418575 8.65074006035375 7.96163262739584 8.07196589902775 0.139379439533647 0.142688651922997 0.147356972009855 0.143467261852633 0.142208286194723 0.150071154727731 0.146340943710184 0.154361534625596 0.159604069061244 0.143767743581690 0.142491583109589 0.139709714472557 0.139158674980933 0.144665471984922 0.141096720803254 0.139158674980933 0.15216534239519 0.144513991320062 0.145827880336341 1 1|0 -|/ 1076154 1077203 1076707.556 1075543 1080629 - gene protein_coding_gene FALSE TRUE AT1G04140.1|AT1G04140.2 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G43930.3); similar to transducin family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33212.1); similar to Os02g0290300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046589.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71197.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045)|similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G43930.3); similar to transducin family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33212.1); similar to Os02g0290300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046589.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71197.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.288488092431998 3.03515736812467 0.0114752279496079 1 2.68000355025729 16.6182689487055 0.288488092431998 0.0819399038956894
AT4G38660_at 1.52813865616368 2.24207686338977 0.922523041220816 0.561835740393093 0.618563647743994 0.997264029049951 1.65118789064591 1.86892105660708 1.9428580414534 1.90765496086278 2.43146842399792 2.96486327724490 1.82425422645542 2.19381394920358 3.6903727701444 1.69410189136509 1.23755388656913 2.06878020329685 2.07818374282201 0.214403388516856 0.206217690648813 0.2152468130521 0.205345940592477 0.211260291621441 0.219088263326599 0.207681597576514 0.209187877635868 0.206023481859664 0.205345940592477 0.212219969709151 0.209267139681351 0.211053447092214 0.20882876496438 0.210546268644316 0.205345940592477 0.208268317729543 0.210571306926413 0.209672685846027 4 4 - 18066463 18067363 18067050.636 18066171 18068199 - gene protein_coding_gene FALSE TRUE AT4G38660.1|AT4G38660.2 thaumatin, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24180.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77922.1); similar to Os03g0243900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049531.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) -0.380307835972188 -3.03416810944697 0.0114954227016840 1 2.67845188438733 3.41850552910881 -0.380307835972188 0.157719632207905
AT2G43360_at 4.89645161236411 4.94678860512027 3.11462171419551 2.63957933220367 3.62459871585689 3.47333176321827 5.66004880021237 5.59567849046013 3.76622171559458 5.11755267578056 6.27377794858539 7.31110967892861 5.72576184638218 6.4199661876755 7.20485430765659 5.40297124941078 4.80078358950819 4.82238382560048 4.67854976762466 0.242591317474127 0.244075271175121 0.237216013786938 0.235925648455201 0.240260239695073 0.247390851550510 0.239117052072544 0.246360472300748 0.246092822812964 0.242168425132516 0.235925648455201 0.235925648455201 0.240212272092927 0.243507352381594 0.246229661979365 0.235925648455201 0.255120842996932 0.248827798274170 0.236052851343758 2 2 - 18018083 18018811 18018388.091 18017828 18020315 - gene protein_coding_gene FALSE TRUE AT2G43360.1 BIO2 (BIOTIN AUXOTROPH 2); biotin synthase Catalyzes the conversion of dethiobiotin to biotin. Identical to Biotin synthase (EC 2.8.1.6) (Biotin synthetase) (BIO2) [Arabidopsis Thaliana] (GB:P54967); similar to biotin synthase [Brassica rapa subsp. pekinensis] (GB:ABI63585.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Biotin synthase; (InterPro:IPR002684); contains InterPro domain Biotin and thiamin synthesis associated; (InterPro:IPR010722); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.293641318059387 -3.03257041924082 0.0115281137953017 1 2.67594585106684 9.50187527864643 -0.293641318059387 0.0874267477687789
AT1G68580_at 7.65084245475062 7.77109187208353 7.35687987336234 7.16907901992184 7.91331560107362 7.81406102003448 7.81013971767263 7.64869537691502 8.04893578158446 7.22130154947397 7.87064804127425 7.62664378015866 7.28682249223747 7.61248089388298 6.74212614164633 7.14071095186653 7.04926489161157 6.39662742302854 7.48280430229268 0.154833060839650 0.157602373892476 0.160271449125777 0.159135278883672 0.158369808958732 0.156361343947299 0.159659357534765 0.158684117004150 0.168920697750349 0.162837661957407 0.156775424994002 0.157420018251853 0.155968404052979 0.164677926527331 0.164845328229071 0.158154761564323 0.163405199814261 0.188123658676262 0.158070596365658 1 1 + 25758902 25759381 25759109.091 25756398 25759739 + gene protein_coding_gene FALSE TRUE AT1G68580.1|AT1G68580.2 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55600.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99338.1); similar to Os08g0431100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061860.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)|similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55600.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99338.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.26277005545556 -3.03239451422725 0.0115317188021580 1 2.67566993530826 15.0417695110169 -0.26277005545556 0.0506446860986201
AT1G76560_at 6.62308228339145 6.60562509499618 5.52884786237347 5.50626815811749 6.19164267638703 6.34037218272254 5.69670145815936 5.9694625091444 4.9107199163581 5.39735159202125 4.52418997439606 5.11724597758755 4.90507853160098 5.36246580889915 4.37751236473141 5.07444499811427 5.71471284680002 5.09965619288569 5.35178346734564 0.246163725757406 0.247937547870442 0.245293187133118 0.246353142437573 0.248231945521664 0.25196800239182 0.256498276025102 0.249275054336027 0.251448720751661 0.250652893847795 0.250212417764437 0.250164300662653 0.244113535107869 0.245566436424656 0.252916455417249 0.244113535107869 0.24808396516879 0.244490896124346 0.250930282236518 1 1 + 28733189 28733541 28733351.455 28733147 28733747 + gene protein_coding_gene FALSE TRUE AT1G76560.1 CP12-3 similar to CP12-1 (CP12 domain-containing protein 1) [Arabidopsis thaliana] (TAIR:AT2G47400.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10071.1); contains InterPro domain Protein of unknown function CP12; (InterPro:IPR003823) -0.264986719110408 -3.0321043298782 0.0115376683435657 1 2.67521476563306 11.1786827758874 -0.264986719110408 0.0539901856145086
AT1G49860_at 0.542988908489078 0.687787329753499 0.694506076447391 1.05384818305559 0.63718420020236 0.699889836628978 0.85997649514114 0.897489346232468 1.53470972090991 1.54922408322634 0.84766677280807 0.69147411591671 1.22479617007362 0.360564847317067 1.01458219180802 0.91514714330897 0.684736025713712 1.09096015170740 1.20530874515108 0.212446820171017 0.212947466896704 0.209709453181420 0.208748589738566 0.205354609974896 0.208968610336381 0.207226214248208 0.207288310702954 0.208694738114495 0.209205827273296 0.205354609974896 0.206346075911794 0.211688581839253 0.210974531509769 0.209743017218257 0.205354609974896 0.223160667246854 0.223817102442748 0.213552016110728 1 0|1 /|+ 18462843 18463337 18463107.1 18462334 18463574 + gene protein_coding_gene FALSE TRUE AT1G49860.1 ATGSTF14 (Arabidopsis thaliana Glutathione S-transferase (class phi) 14); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF8 (GLUTATHIONE S-TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G47730.1); similar to Glutathione S-transferase (GST class-phi) (25 kDa auxin-binding protein) (GB:P46423); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.275855017458939 -3.03205656983405 0.0115386478468815 1 2.67513985131813 1.90095301887422 -0.275855017458939 0.068226687239008
AT1G71800_at 6.90228527730654 6.68506451914374 6.69163406673748 6.80116031632766 6.8258766300392 6.67954608664186 5.66714815736059 5.5863283276969 5.02706960238029 4.9734641766014 4.91275713890039 5.21850252779943 5.38861340598645 5.41876785982203 5.230405194825 4.8513331699009 5.06727878577698 5.20230425905578 5.52322192529914 0.200846983191521 0.203343151999858 0.203951168935836 0.207851250391454 0.205325916711905 0.216734137378192 0.204581785090341 0.197804826985306 0.232665724352939 0.194864370635018 0.200791673929010 0.197097135856394 0.194864370635018 0.194864370635018 0.203809725291139 0.195227489077981 0.214801603147839 0.199188922804284 0.197543413722979 1 1 + 27004771 27005485 27005110.727 27003114 27006004 + gene protein_coding_gene FALSE TRUE AT1G71800.1 cleavage stimulation factor, putative similar to ESP1 (ENHANCED SILENCING PHENOTYPE 1) [Arabidopsis thaliana] (TAIR:AT1G73840.1); similar to Os11g0176100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065883.1); similar to PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 8 [Canis familiaris] (GB:XP_861476.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.263003881278848 3.03180424817729 0.0115438240660522 1 2.67474406999895 11.6477956864161 0.263003881278848 0.0510805454171944
AT1G78490_at 6.7232201633428 7.06818149312074 5.72603204130764 6.13101521687843 6.58274868405552 5.27490331925989 6.63577921759371 5.75194302316483 4.10529553557931 6.02038765969265 7.97363153375397 7.89359021771903 6.63757327354357 8.38264642290584 7.94634442382297 7.95118241131192 6.32998658469059 7.6143502338739 7.29576036849418 0.253522147732253 0.246193969514628 0.257332705116566 0.253954562822654 0.248640365598812 0.252626157320901 0.252697479247606 0.252141070305429 0.260560489472887 0.247098408232371 0.246193969514628 0.252338955910897 0.246193969514628 0.255507964849632 0.25477383903961 0.246193969514628 0.253901979134469 0.262728315435411 0.255803910689137 1 1 + 29534357 29535253 29534964.182 29533146 29535558 + gene protein_coding_gene FALSE TRUE AT1G78490.1 CYP708A3 (cytochrome P450, family 708, subfamily A, polypeptide 3); oxygen binding member of CYP708A similar to CYP708A2 (cytochrome P450, family 708, subfamily A, polypeptide 2) [Arabidopsis thaliana] (TAIR:AT5G48000.5); similar to E-class P450, group I [Medicago truncatula] (GB:ABE90564.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.58395456209193 3.03123451555844 0.0115555203946698 1 2.67385040719702 12.9358833909862 0.58395456209193 0.288261263403286
AT1G36240_at 1.97328718626533 2.19752881640144 1.99418214903048 1.99297102227658 1.63222140337918 1.68831441948191 1.82960817330394 2.39707667530688 2.88016686082420 2.34306138362571 1.70702633398091 1.95711055680323 2.05042571221062 2.56641000650964 2.02730532359690 2.32701788374244 2.30031379549926 2.1859819934723 2.26047736267484 0.225379054194528 0.220548242591809 0.236658438175927 0.235057593367949 0.219603336777207 0.219293454823658 0.220640718804731 0.220081871763266 0.229520427884501 0.222058538731588 0.222580976511353 0.218703182428221 0.227998307621705 0.220865417506048 0.223308435361611 0.218703182428221 0.233637303796062 0.231982658144789 0.228661814912613 1 1|0 +|/ 13616273 13617417 13616932.3 13616102 13617445 + gene protein_coding_gene FALSE TRUE AT1G36240.1 60S ribosomal protein L30 (RPL30A) Identical to Putative 60S ribosomal protein L30-1 (RPL30A) [Arabidopsis Thaliana] (GB:Q9C8F7); similar to 60S ribosomal protein L30 (RPL30B) [Arabidopsis thaliana] (TAIR:AT1G77940.1); similar to 60S ribosomal protein L30 (GB:O49884); contains InterPro domain Ribosomal protein L30e; (InterPro:IPR000231); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.313411274629348 -3.02993194353774 0.0115823065186273 1 2.67180721849849 4.2805324738983 -0.313411274629348 0.106037852928965
AT2G40840_at 10.7219264249675 10.7591780830739 10.6924738215292 10.8039379805035 11.0288553907757 10.8272621660508 11.0895954132728 10.7470244984417 9.95395718929947 10.7533024589326 10.8960510719720 10.7254020819677 10.8378548381827 10.8992008701690 10.7238856422743 10.7830952112058 10.9930861079882 11.0951722838992 10.2547153013230 0.106578743847929 0.102394418510772 0.108617345789391 0.104962485804938 0.103882427703981 0.105154552894446 0.102394418510772 0.102587180072292 0.117139262668771 0.103700077540297 0.103992150663893 0.102641003339825 0.106371430728160 0.105690997369070 0.103273971746221 0.102394418510772 0.102465495758429 0.106011641169675 0.107044693883490 2 2|0 +|/ 17057026 17057769 17057445.875 17052041 17058025 + gene protein_coding_gene FALSE TRUE AT2G40840.1 DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose. similar to DPE1 (DISPROPORTIONATING ENZYME), 4-alpha-glucanotransferase [Arabidopsis thaliana] (TAIR:AT5G64860.1); similar to putative alpha-glucanotransferase [Bacteroides fra (GB:YP_213214.1); similar to 4-alpha-glucanotransferase; disproportionating enzyme [Solanum tuberosum] (GB:AAR99599.1); similar to hypothetical protein DDBDRAFT_0185931 [Dictyostelium discoideum AX4] (GB:XP_638682.1); contains InterPro domain Glycoside hydrolase, family 77; (InterPro:IPR003385); contains InterPro domain Glycoside hydrolase, starch-binding; (InterPro:IPR002044) 0.278630715857414 3.02975204129892 0.0115860109560074 1 2.67152502529669 21.4287201373148 0.278630715857414 0.07173039718738
AT2G37420_at 2.22519102623681 1.91899693965980 2.50645356272810 2.48535570729014 2.38020608692761 2.13610284063177 1.47812714555742 1.73076628708429 1.36031386767551 1.54103577956139 1.45022724460026 1.74043766486801 1.45538188701902 1.68949769465492 1.40319842172177 1.45384489050364 1.98865916898673 1.54455382444578 1.76697541021422 0.197378210117919 0.191242647470931 0.189898708592022 0.197725969953144 0.189898708592022 0.194811671585351 0.190605085381560 0.191575645823384 0.190359244395916 0.192100716953879 0.190073481850127 0.194475543203803 0.197900701009796 0.193073642367092 0.205145596243466 0.189898708592022 0.189898708592022 0.191249513015390 0.192475894617826 2 2|0 +|/ 15711483 15712206 15711903.889 15707410 15712425 + gene protein_coding_gene FALSE TRUE AT2G37420.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G36200.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G28620.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G45850.1); similar to Kinesin, motor re (GB:ABD32308.1); similar to putative kinesin [Oryza sativa (japonica cultivar-group)] (GB:AAV44208.1); similar to KRP120-2 [Daucus carota] (GB:AAK91129.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) 0.286687973438065 3.02838663444061 0.0116141655975517 1 2.66938324261587 3.68106667555635 0.286687973438065 0.0807282606135342
AT1G17490_at 7.22326281294546 7.29323672151797 7.21172558269018 7.28360681762172 7.57615295851968 7.26120191432501 6.86094850245343 6.56464877150465 6.62981150640026 6.96841746869 7.10375189646054 7.2125560971438 6.77970388083767 7.11091563909588 7.18382918500699 7.17318978104667 6.7807101958317 6.78449716890097 6.79514116223701 0.144079569307274 0.140273394102275 0.152557743272942 0.154320293835946 0.144581312641642 0.142487274421642 0.147067664543361 0.145958841582761 0.142663196694631 0.137816725357624 0.15226210637623 0.149153875790718 0.142317096031335 0.149887964925919 0.151193481736294 0.146954028576427 0.142399117610046 0.139238026394088 0.141821941052504 1 1|0 +|/ 6008664 6009129 6009040.222 6008582 6009413 + gene protein_coding_gene FALSE TRUE AT1G17490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72690.1); similar to Os09g0363700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062994.1) 0.283000900474269 3.02792488296919 0.0116237025155557 1 2.66865893086757 14.0663151483554 0.283000900474269 0.0768196944027393
AT2G41705_at 6.27719087776306 6.73876682695699 7.1668848164435 7.2468742034685 7.77761313201124 7.2362826471004 5.77570847291519 6.37976757885556 5.79503913397421 5.852199077998 5.19164562383803 5.26668639902835 5.51330142139742 5.7850338677384 3.97921687682806 5.75387723328625 5.86438257883642 5.49320081223149 5.29920557912802 0.22273072527605 0.220505452884759 0.219870631512066 0.215127633780767 0.214813548489479 0.220080940701331 0.237429336508565 0.217110689011841 0.227274036418900 0.21416994988467 0.21416994988467 0.217996204137320 0.218885372540589 0.218017371915226 0.222023973177868 0.21416994988467 0.227170467383970 0.215441886369197 0.216897696589189 2 2 + 17406385 17406948 17406568.909 17404352 17407154 + gene protein_coding_gene FALSE TRUE AT2G41705.1 camphor resistance CrcB family protein similar to Os10g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065429.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_500293.1); contains InterPro domain Camphor resistance CrcB protein; (InterPro:IPR003691) 0.385579382623931 3.02704021040334 0.0116419964433763 1 2.66727120828671 12.3272524187800 0.385579382623931 0.162097519975384
AT3G25990_at 2.73776451966464 2.67191306349036 2.65028775268144 2.98074613451737 2.59322286245128 2.85289026521575 1.46752245097504 2.16754874313681 1.38304008601544 1.89964040124287 1.49637229543236 1.56474346965765 1.79637848403168 2.25220575081303 1.87767126959421 1.93979538109348 1.81917190294932 1.81664226161795 1.55739075270437 0.212310775364140 0.208201907138286 0.211717106957035 0.2169021913082 0.208558328189569 0.212649789319828 0.208201907138286 0.221481504044922 0.211919329298657 0.208430296069617 0.208923613472918 0.20845477138066 0.216654088293649 0.214533467937007 0.208651504385039 0.210628409242397 0.212548510495445 0.216800632697162 0.209901716835870 3 3|0 -|/ 9506095 9506792 9506408 9505914 9508024 - gene protein_coding_gene FALSE TRUE AT3G25990.1 DNA-binding protein GT-1-related similar to DNA binding protein GT-1 [Arabidopsis thaliana] (TAIR:AT1G13450.1); similar to GT-1 (GB:AAA66473.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.357557540655448 3.02697084875164 0.0116434319840373 1 2.66716240512109 4.23210181495972 0.357557540655448 0.141757347978771
AT1G67880_at 5.62519165179459 6.79141159384449 6.11018098925338 6.47222972429423 6.13960535623867 5.81458361968336 7.32702175099752 7.29827255554985 5.58466802412819 6.04984642685212 5.73017762102801 5.53165828478489 6.19475261579389 5.70796667998909 4.93884424700604 5.69635684474349 6.00935355308154 5.45384607959078 6.28260332560216 0.216796647345036 0.216326733481442 0.215368659218641 0.212978976779247 0.212716058724066 0.222599727051575 0.215136135271505 0.221606191094680 0.220918232798144 0.211490743814131 0.21243787808344 0.227037556819964 0.230987728907252 0.217939518289144 0.222948156296769 0.212973959322606 0.222831108527228 0.218296049706597 0.218220809949417 1 1 - 25457770 25458303 25458048.727 25457584 25459398 - gene protein_coding_gene FALSE TRUE AT1G67880.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G12990.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); similar to beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula] (GB:CAI70376.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313) -0.470413783560572 -3.0267859320297 0.0116472599787716 1 2.66687233778677 12.2624331966802 -0.470413783560572 0.218735473805766
AT1G22510_at 6.65282142674328 6.77196992514385 6.5118667402145 6.46101370890162 6.48448699263208 6.6168137314154 5.17418969335333 4.87333457556646 4.8308881023016 4.4174995993914 4.49404135923674 4.48916741976751 4.4690506996582 4.26339603978658 4.82828426860728 4.30761162057245 4.09962764077983 4.33217859816107 4.31620017961442 0.212926972154995 0.207860925099647 0.207094891770138 0.207508543226282 0.207241571954779 0.214138417863083 0.207437721086986 0.214427484484995 0.225819580911869 0.208717713253676 0.205981926414157 0.206851413976799 0.208496277354087 0.226356542164023 0.206318889408621 0.205964237756706 0.233425378239415 0.216539580070169 0.211204618581606 1 1|0 -|/ 7951050 7952560 7952022.444 7950808 7952662 - gene protein_coding_gene FALSE TRUE AT1G22510.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72175.1); similar to hypothetical protein LOC406612 [Danio rerio] (GB:NP_999915.1); similar to Os03g0839000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051839.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.269678400070620 3.02644661131078 0.0116542876232300 1 2.66634006518466 10.6592865990415 0.269678400070620 0.0611367038118722
AT3G04660_at 1.30749653668091 1.17728107467164 1.23865441774562 1.2006491319964 1.35274314864640 1.60621839417633 0.988272631627567 1.12855570362422 0.933355032942505 1.17174006679199 1.55365836059462 1.33203574151360 1.46353140470383 1.37636391589226 1.81072157550023 1.08495613001107 1.62099321918362 1.30407495961863 1.22981582637832 0.223707433970472 0.218098322247187 0.214575751389638 0.213578638657512 0.217094678855136 0.220463567047117 0.221461261551114 0.211557990035133 0.216625787427777 0.217575574520566 0.215720364210784 0.212774828725708 0.216056449024719 0.219795395707731 0.215966775996814 0.215888314150291 0.216802843249798 0.215182756798217 0.223517517263221 3 3 + 1265440 1265944 1265703.455 1264732 1265972 + gene protein_coding_gene FALSE TRUE AT3G04660.1 F-box family protein similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT2G13630.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.265409862248199 3.02607006862119 0.0116620911789637 1 2.66574940262328 2.52744832427022 0.265409862248199 0.0553584284312967
AT3G57120_at 3.90881973085419 3.53229231401981 3.56056455693094 3.45176252410344 3.43624941186515 3.68540286251483 3.29224712079872 3.52865604453069 3.86410334705409 2.80585461924862 4.30967917336667 3.54552802502802 3.53565193760701 4.14861479935467 4.04294220962046 3.98884537514624 3.45865541962821 3.79331843265849 3.01821245962895 0.204118476700754 0.198770548336468 0.198770548336468 0.200805011342625 0.205327285831480 0.199698514946050 0.205810830168994 0.207816030430628 0.211571323607795 0.201438976517531 0.201986223188451 0.204092924936130 0.211159666141444 0.208810232568949 0.203730490912922 0.198770548336468 0.207918165023515 0.203871882077521 0.209729396691210 3 3 + 21150850 21151409 21151072.273 21149884 21151589 + gene protein_coding_gene FALSE TRUE AT3G57120.1 protein kinase family protein similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51940.1); similar to Protein kinase [Medicago truncatula] (GB:ABE87818.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.29575265793837 3.02546624687191 0.0116746159282572 1 2.66480221502112 7.09064660246644 0.29575265793837 0.0901841300827202
AT2G20330_at 6.76944822115474 6.84525613237534 6.38307383105913 6.49968971337809 7.16385477473022 7.05893037640228 7.22725379623797 6.79716950053765 6.64378191125093 6.8956295626067 6.41177236499481 6.03050656720117 6.32371420629194 6.08515752440923 6.3744476004678 6.48093478332328 6.28662486747699 6.49744811442566 6.70972070351876 0.184320819756464 0.177557570568381 0.193463513430396 0.185693463576323 0.181323280381665 0.192037800785744 0.177175784750110 0.188307849850589 0.192079199958205 0.184904010059032 0.183590174212507 0.184142894173875 0.182792663533885 0.181100211014335 0.177921928812481 0.180802773703152 0.190596565350225 0.180913424265028 0.184274679719867 2 2 - 8780034 8780682 8780437.091 8779768 8782695 - gene protein_coding_gene FALSE TRUE AT2G20330.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to WD40-like [Medicago truncatula] (GB:ABE88641.1); similar to Os10g0464100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064792.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.285889855451132 -3.02420353629347 0.0117008515514687 1 2.66282144116351 13.3736027829174 -0.285889855451132 0.0803032816228567
AT2G44190_at 1.02524666390460 1.52952023691164 1.47556952254672 1.42313199328057 1.12534986774832 1.36009241849994 0.99951947453046 1.58513058002947 0.770061685947683 0.81177511267877 1.41283307065375 0.942017027174477 1.11682362807190 1.19005831478231 1.46768057272978 1.47528606894547 1.28995880377397 1.22860523550968 0.268117749337816 0.233996159475853 0.235616431916948 0.233142738109332 0.236263757683974 0.239083787019012 0.235169781530521 0.235121132218899 0.231593863832234 0.233702303264338 0.231593863832234 0.232746521296573 0.237333012551287 0.231593863832234 0.237073712559098 0.239321182944528 0.234107820308260 0.232068556541941 0.239971633783546 0.236613283266109 2 2|0 +|/ 18280247 18281384 18280855.3 18279267 18281573 + gene protein_coding_gene FALSE TRUE AT2G44190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60000.1); similar to streptococcal hemagglutinin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD29665.1); contains InterPro domain Protein of unknown function DUF566; (InterPro:IPR007573) 0.354969017945962 3.02410656797566 0.011702868742644 1 2.66266932908566 2.25647477277809 0.354969017945962 0.140065912438430
AT3G26300_at 7.15226135831128 7.38336572442882 6.65302489917492 6.61603816990296 7.89034124311958 7.22692213317919 7.89041527143965 7.92509653297013 7.61538391366522 7.98446170589059 7.97355242270597 8.05178762595832 7.91196954334924 7.57391478684533 7.94153174520951 8.1059298404691 7.1985818378313 7.84567744179082 8.3915699806843 0.193557995208636 0.195125818997488 0.192653993051141 0.187925081951152 0.184982639979787 0.195009548140099 0.184080135257386 0.190359605279468 0.210893290136667 0.190808138962077 0.19101468708155 0.187439210165143 0.182428516456592 0.193292417238197 0.195316585911134 0.186977219652459 0.201093896804299 0.186010106339259 0.183640310547780 3 3 - 9640438 9640973 9640682.545 9640436 9642103 - gene protein_coding_gene FALSE TRUE AT3G26300.1 CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B34 (EC 1.14.-.-) (CYP71B34) [Arabidopsis Thaliana] (GB:Q9LIP6); similar to CYP71B35 (cytochrome P450, family 71, subfamily B, polypeptide 35), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26310.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to CYP71B26 (cytochrome P450, family 71, subfamily B, polypeptide 26), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26290.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.331486744168361 -3.02255011302115 0.0117352950908647 1 2.66022773364471 15.2534365110325 -0.331486744168361 0.121890564630451
AT2G01940_at 2.86869767731857 3.24975288795654 1.77844000431770 2.05528278695019 2.99828556380629 3.35591551239442 2.21673884204056 2.60254004758812 3.00422717568615 3.40760868429677 3.21836424131443 3.10160687386999 2.58734465595426 3.95181218281285 3.23220101976402 3.09846965172359 2.79264388653096 2.72969106715903 4.28399794574808 0.224878740656209 0.22394123908231 0.245225348159564 0.239827545791088 0.22394123908231 0.22394123908231 0.229622067782780 0.23726569145893 0.2319580944089 0.225148286516885 0.225928970547855 0.229181184745458 0.22394123908231 0.230892870388731 0.227909932745639 0.229086179204159 0.227049842195306 0.226488794183200 0.238407269313024 2 2 + 434322 434860 434590.818 432274 435076 + gene protein_coding_gene FALSE TRUE AT2G01940.1|AT2G01940.2|AT2G01940.3 SGR5 (SHOOT GRAVITROPISM 5); nucleic acid binding / transcription factor/ zinc ion binding|SGR5 (SHOOT GRAVITROPISM 5); nucleic acid binding / zinc ion binding|SGR5 (SHOOT GRAVITROPISM 5) May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells. similar to ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G68130.1); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09547.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14) [Arabidopsis thaliana] (TAIR:AT1G68130.2); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09547.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.331856317355661 -3.02248892939763 0.0117365716082527 1 2.66013175479134 5.96785398161395 -0.331856317355661 0.122195067189593
AT3G59430_at 2.33819043408318 1.88843321207886 2.52115695235010 2.95821910917860 2.9555390260854 2.52445466817847 2.31631916782275 1.87157718926496 2.08375727915338 1.86187015817659 2.27520305456845 1.75318851116835 2.39059929731295 2.17586022046503 2.14714177436426 2.02576937834316 1.79323305276584 2.13074844447867 1.99259996682127 0.218799259858357 0.216075288561073 0.220088552722055 0.212655219350781 0.216236341842087 0.219402938352531 0.219298597273595 0.219890099526783 0.220722654748067 0.212655219350781 0.213165455105636 0.215787435263632 0.212655219350781 0.215053553948759 0.217237948970226 0.213597289684326 0.219590010873148 0.216422203362964 0.217063701302823 3 3 - 21975626 21976103 21975872.636 21975042 21978012 - gene protein_coding_gene FALSE TRUE AT3G59430.1|AT3G59430.2|AT3G59430.3 unknown protein 0.371635635050983 3.02238125745713 0.0117388183847016 1 2.65996284950731 4.4546747705805 0.371635635050983 0.152537063854932
AT2G41000_at 4.20350213426798 4.40641615343328 5.23377370107275 5.31277119057189 5.40592099857854 5.23352885790344 5.2420794231689 4.87526809300164 3.76515594053025 3.48642555399012 3.52984641320402 3.34387799493998 3.91963287988146 3.98200531950230 3.36143870218387 4.22527990964813 4.76259061038685 3.50044601203334 4.36647228359055 0.182586503091196 0.187104032284860 0.184010420166283 0.188164689894088 0.196381429681787 0.197980596977149 0.191061816604772 0.188922017217791 0.191127678454648 0.185361627812766 0.18592812510307 0.183635864696653 0.189986696397764 0.183641212516668 0.192907068413428 0.181553956810877 0.182921111537084 0.193653288410315 0.180832710526429 2 2|0 +|/ 17118841 17119119 17118967.7 17118523 17120712 + gene protein_coding_gene FALSE TRUE AT2G41000.1 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51); heat shock protein binding Identical to Chaperone protein dnaJ 72 (AtJ72) (AtDjC72) (ATJ72) [Arabidopsis Thaliana] (GB:O80684;GB:Q84MC8); similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G22360.1); similar to Os01g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042738.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE83713.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.285068686791279 3.02230726874306 0.0117403625492279 1 2.65984678310228 8.83956973046287 0.285068686791279 0.0796210017181319
AT1G01170_at 10.3765454185073 10.5265217245964 10.5522927355782 10.5236623425613 11.2229266431792 10.9199205383242 10.6561052036797 10.4926686506713 10.7818367480409 10.8686157753967 11.14348857917 11.2001892460842 10.8950379708608 11.1360114228951 11.0759084794384 11.0739551515195 10.8627255589839 11.0677836170864 10.7608366925816 0.0934810271932808 0.088893057947841 0.0961034974280406 0.0915776448098904 0.088893057947841 0.0949890116807822 0.088893057947841 0.0921361112878846 0.0903644388826126 0.0892774757235462 0.0889353144435078 0.0895756742005278 0.0888950574798715 0.0914165208481586 0.0916174893107763 0.091303958981433 0.0986424398810695 0.088893057947841 0.0914100843379883 1 1|0 -|/ 74109 74399 74247.1 73931 74737 - gene protein_coding_gene FALSE TRUE AT1G01170.1|AT1G01170.2 ozone-responsive stress-related protein, putative similar to ATOZI1 (Arabidopsis thaliana ozone-induced protein 1) [Arabidopsis thaliana] (TAIR:AT4G00860.1); similar to Os06g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056609.1); similar to Os06g0114500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056604.1); similar to Protein of unknown function (DUF1138) [Oryza sativa (japonica cultivar-group)] (GB:AAX95468.1); contains InterPro domain Protein of unknown function DUF1138; (InterPro:IPR009515) 0.272432373397722 3.02188351012024 0.0117492104563899 1 2.65918202968394 21.5891556947678 0.272432373397722 0.0651745089255847
AT1G68990_at 4.35577145676612 3.98760392069398 4.10892019050466 3.70364915744882 4.09770461294152 3.86233668988898 5.18165716517329 4.64787100563474 3.28093811058237 3.31925813621089 2.98702699450530 2.8729357808414 3.24166790456772 2.97343746958628 3.41607568318716 3.81965549350337 3.58634297535328 3.5247741978686 3.62295993515409 0.287892711211289 0.280308055037058 0.282776000047784 0.289728610550183 0.280630939582097 0.277645373661801 0.284063176915352 0.283337495135757 0.290731555791379 0.288463215369932 0.281810827693239 0.281616070905816 0.282269496554030 0.286976623355804 0.277645373661801 0.284569046835395 0.28023088041457 0.282669942098814 0.283388060616134 1 1 - 25939167 25940103 25939593.7 25938660 25944629 - gene protein_coding_gene FALSE TRUE AT1G68990.1 DNA-directed RNA polymerase, mitochondrial (RPOMT) Identical to DNA-directed RNA polymerase 1, mitochondrial precursor (EC 2.7.7.6) (RPOT1) [Arabidopsis Thaliana] (GB:P92969;GB:O23698); similar to PDE319/SCA3 (PIGMENT DEFECTIVE 319, SCABRA 3), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G24120.1); similar to DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana] (TAIR:AT5G15700.1); similar to phage-type RNA polymerase [Nicotiana tabacum] (GB:CAC82574.2); similar to DNA-directed RNA polymerase 1B, mitochondrial precursor (T7 bacteriophage-type single subunit RNA polymerase 1B) (NictaRpoT1-tom) (GB:Q8L6J5); similar to DNA-directed RNA polymerase 1, mitochondrial precursor (T7 bacteriophage-type single subunit RNA polymerase 1) (NsRpoT-A) (GB:Q93Y94); contains InterPro domain DNA-directed RNA polymerase, bacteriophage type; (InterPro:IPR002092) -0.35252619463009 -3.02141802073186 0.0117589374406948 1 2.65845180997054 7.59841841975272 -0.35252619463009 0.138456457354552
AT1G22885_at 7.09594698992202 7.16481579259239 6.95633157935777 7.14444435849922 7.51477577409312 7.03025097054875 6.77753009564908 7.0526177760543 7.47106219841283 6.92075868623304 8.24754637820318 8.35391472737644 7.4297975472055 7.78748274447233 7.91094634786034 7.37245623581672 6.91886967058333 7.73399753080031 7.33160210763602 0.172062808615707 0.170212187205042 0.171209905410079 0.175848399473902 0.165803557495594 0.172637458315039 0.176263030067357 0.175040144378402 0.171588353585762 0.169704346410959 0.171872207797755 0.174754241882710 0.171702647778586 0.175161300995954 0.175840295421832 0.171788605202725 0.179597399334510 0.170341370152988 0.171308795953623 1 1|0 +|/ 8101609 8102097 8101877.111 8101554 8102364 + gene protein_coding_gene FALSE TRUE AT1G22885.1|AT1G22885.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22890.1) 0.308479203716371 3.02118173033235 0.0117638781338529 1 2.65808113675232 14.5723478646981 0.308479203716371 0.102463392070542
AT3G09390_at 11.7925675166048 11.8419664016862 12.1238712322444 12.1228027208443 11.9379508209056 12.1053869377914 10.9759859821475 11.3624282588189 10.6666491129008 11.2281860649471 10.7938724013706 10.2238672683116 11.4499576561352 11.1520415484386 10.0703515893826 11.1869274772117 11.7634977336094 10.7524383216485 10.9396229459128 0.0894723755645331 0.0906863514688856 0.0885374255734567 0.0888214379225238 0.089511478918994 0.0917039403547239 0.090371424488172 0.08955933574188 0.0942310757500043 0.0908304884804348 0.0938193314522215 0.104550488591495 0.0893109662855993 0.0937338668450593 0.105200074905175 0.0899706594932352 0.0944393396683497 0.0925974606332123 0.0887693445564165 3 3 - 2889747 2890166 2889914.182 2889492 2890235 - gene protein_coding_gene FALSE TRUE AT3G09390.1 MT2A (METALLOTHIONEIN 2A) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage Identical to Metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G) (MT2A) [Arabidopsis Thaliana] (GB:P25860;GB:P43391); similar to MT2B (METALLOTHIONEIN 2B) [Arabidopsis thaliana] (TAIR:AT5G02380.1); similar to Metallothionein-like protein type 2 (GB:P69164); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347) 0.279282881529347 3.02113962261929 0.0117647588012322 1 2.65801508150454 22.7173392959306 0.279282881529347 0.0733829069598279
AT3G12030_at 5.05518752340165 5.23919104023127 4.81395561781894 4.45109641321209 4.63970107336037 4.61283047350063 3.47631099948247 4.05132495830037 4.38266234609299 4.38447014145858 5.16979735482995 5.30949533991533 4.54911046053802 5.39406121500337 5.51106581628491 4.48787164864003 4.11706614782427 4.06468946481565 4.24246625847627 0.230456676246232 0.232068041622183 0.233172588258907 0.238325597690904 0.229182183496254 0.238979812202032 0.229182183496254 0.234360274018837 0.245868486566265 0.231130085902604 0.233511075168978 0.233341007787869 0.229182183496254 0.229421769133339 0.238454809478092 0.229182183496254 0.244521032879479 0.233989494848818 0.236640629301390 3 3 - 3834574 3835017 3834773.364 3834367 3835081 - gene protein_coding_gene FALSE TRUE AT3G12030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06660.1); similar to fiber protein Fb27 [Gossypium barbadense] (GB:AAQ84318.1); contains InterPro domain Protein of unknown function DUF841, eukaryotic; (InterPro:IPR008559) 0.331377014878952 3.02046848110399 0.0117788044639191 1 2.65696224447774 9.1234135605755 0.331377014878952 0.12198662146246
AT3G33520_at 6.70853978525294 6.74272546776514 7.10373744577622 7.37993308330303 7.64871655269143 7.6482073042587 6.99530435326773 6.99717643789961 7.45540245930157 6.95730467479181 7.39864568224949 7.29129539648511 6.9359706680032 7.1580550831429 7.06384288930697 7.42299663682866 6.95183579900468 7.4020601119762 7.38845458834458 0.180200558598716 0.177537019598191 0.182174205545084 0.191753997394792 0.189547484239473 0.183425656246442 0.184564175881637 0.180132362886704 0.187310069604896 0.18980485499902 0.191176874223079 0.178550035223674 0.192816307560099 0.186527512820508 0.184086614092777 0.178753344519211 0.190290460198803 0.188513339463149 0.184019740777408 3 3|0 -|/ 14104797 14105757 14105252.1 14104642 14106535 - gene protein_coding_gene FALSE TRUE AT3G33520.1 ATARP6; structural constituent of cytoskeleton Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to actin-related protein 6 [Capsella rubella] (GB:ABA18103.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.260122980678163 3.02002978526510 0.0117879946428461 1 2.65627404761544 14.3881133992038 0.260122980678163 0.0481628431781658
AT1G47410_at 3.31447099647754 3.09335120647126 2.89121886154313 2.78744745404228 2.56402478771874 2.63263835992995 3.62902160104694 3.30857165834099 3.4960537852936 3.48084238468648 3.4465105437655 4.43181847961901 3.13086284548154 3.50471432891247 4.24218745747848 3.35222565779715 3.09631509101273 4.10164402198007 3.82162907540217 0.171328775832847 0.172466676290126 0.168260271910665 0.168614764579261 0.164477416161259 0.166861709867522 0.163829274710214 0.172829250231132 0.178021911475383 0.174555263424939 0.164734085763121 0.166219682568119 0.16895265010015 0.173899832000829 0.169557394150987 0.164074665498267 0.178923641264507 0.177610120409154 0.182111412489584 1 1 + 17397272 17397919 17397642.091 17397205 17398113 + gene protein_coding_gene FALSE TRUE AT1G47410.1 unknown protein -0.276872555823602 -3.01998147594439 0.0117890071103244 1 2.65619826300333 6.658989724888 -0.276872555823602 0.0707322605137905
AT1G72580_at 2.58242511835087 2.67619439216256 2.37614355907462 2.63744050110433 2.10462376207978 2.32960570499568 2.59167974476584 2.90058274135160 3.04326497735350 2.92222025744114 2.52411473084472 2.52478402162066 2.76677980384763 3.15727697511553 2.53672074389407 2.70045458199396 2.59816567966008 2.78228869118907 2.87471515177789 0.180538325683841 0.177643627484125 0.187303013924763 0.192758369343322 0.181575195525005 0.178442902120771 0.181349668345377 0.184214687080835 0.184500294383942 0.175576150177924 0.180673544157311 0.183642678364961 0.183429487666222 0.181397818612730 0.176008234026669 0.188289637718562 0.190311139579378 0.182457708452720 0.180367121349386 1 1 - 27338068 27338340 27338207.273 27338068 27338364 - gene protein_coding_gene FALSE TRUE AT1G72580.1 unknown protein -0.286838713007119 -3.019805922441 0.0117926871021827 1 2.65592286548186 5.34761524834144 -0.286838713007119 0.0817409383114183
AT4G37445_at 2.33447465401341 2.65679884960087 2.13867186533566 2.13932648788963 2.04069676769955 2.10398991067297 2.88701614657800 3.15982337288208 3.12180801586121 3.20252636898837 3.64014116360625 3.81706982384962 2.85361284265012 3.10761138171154 3.46576436751559 3.24567355106539 2.4763574186005 3.40213734816359 3.14468893720105 0.23399843449553 0.226017944545747 0.239705816220970 0.235512923741795 0.234802127757359 0.227137344388698 0.236032595383356 0.231064223008842 0.233558472320628 0.227353950385734 0.237506875055298 0.226725123570703 0.227453387845227 0.231934039216785 0.233928219651679 0.230723639123004 0.253027393997011 0.229018314418775 0.232443343370025 4 4 - 17604151 17604748 17604385.636 17604088 17604927 - gene protein_coding_gene FALSE TRUE AT4G37445.1 similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G64850.1); similar to Os02g0126600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045753.1); similar to Os04g0601400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053764.1) -0.279576059037013 -3.01943473393697 0.0118004718555619 1 2.6553405664347 5.63629330408179 -0.279576059037013 0.0738931499669772
AT3G12690_at 3.29499893114456 2.58447547355364 2.64931748472262 2.54565306741045 2.74151225709111 2.71258655324592 3.42586866028478 3.19901629504672 2.95299059179711 3.05491101854199 3.23354147682117 2.77214784696673 3.16421727057792 2.85419302178811 3.18908793695549 2.64858317110240 3.20208843789399 3.11146693656502 3.71717826012384 0.197050625790491 0.190522723471243 0.190447101540432 0.197799166471775 0.191571154163182 0.194227144308468 0.191863891583646 0.191462749070610 0.190576598462785 0.194258514789229 0.191961305240735 0.189737178473966 0.195285215501828 0.203866184817544 0.190932660998980 0.194292726582587 0.19235198535575 0.191502005412509 0.1959601101904 3 3 - 4030659 4031163 4030945.455 4030459 4033339 - gene protein_coding_gene FALSE TRUE AT3G12690.1|AT3G12690.2|AT3G12690.3 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79250.1); similar to viroid symptom modulation protein [Lycopersicon esculentum] (GB:AAF66637.1); similar to protein kinase [Solanum berthaultii] (GB:CAA66616.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.341800013605180 -3.01898593230354 0.0118098912761716 1 2.65463650989565 6.02598311655656 -0.341800013605180 0.130411196161368
AT1G28290_at 2.06565639340043 2.10435516601871 1.29672611904377 1.91115911885033 1.57919836118576 1.74021861402947 2.16261096873569 2.28913011442524 2.25792828724449 3.42064346150425 4.08335123591309 4.93399062064301 3.91312671244867 5.09892959350635 4.97327153382615 3.22434392982617 3.18155454068671 4.02385306252449 3.37136600493690 0.276410730764514 0.273711685056836 0.285370071126389 0.277940181606825 0.27708365914912 0.28426563909679 0.276055903663115 0.275435043035100 0.288397987496117 0.282315742268276 0.284993634458528 0.282540899553808 0.275247036808811 0.283846152751716 0.287185227899935 0.273711685056836 0.273711685056836 0.279702671874496 0.27497248318079 1 1|0 -|/ 9889343 9890210 9889713.1 9889112 9890980 - gene protein_coding_gene FALSE TRUE AT1G28290.1|AT1G28290.2 pollen Ole e 1 allergen and extensin family protein similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT2G33790.1); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041)|similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT2G33790.1); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) 0.319397064204465 3.01795164354796 0.0118316277615065 1 2.65301396142229 5.4914811427447 0.319397064204465 0.112280357421900
AT3G58840_at 4.79990859488842 5.67211984069599 5.04998022198306 4.82954227704179 5.29218502229039 4.42186257460058 6.01003029982102 5.67897875864301 4.98756999442129 5.26958310441136 4.91663030113794 4.99344506360396 4.81355151198406 4.4708543867116 4.66471792581783 4.92507697807899 5.0552724015146 4.82781670081429 5.18168793261981 0.222250324336697 0.220672415684131 0.231076596988305 0.229035193524157 0.223836753117961 0.225384602171296 0.218878725279534 0.222405089199481 0.234281476506385 0.220608607580041 0.228093108101806 0.223274106588109 0.219676932255792 0.226010535401623 0.229701033340214 0.218892760287550 0.22915485836533 0.227781841491412 0.226147016868507 3 3 - 21768477 21769026 21768614.182 21768289 21769749 - gene protein_coding_gene FALSE TRUE AT3G58840.1|AT3G58840.2 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G06530.1); similar to hypothetical protein PY01156 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_728880.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.477363267321366 -3.01779451313681 0.0118349335250877 1 2.65276746062393 10.2091764500082 -0.477363267321366 0.22406413442948
AT2G37010_at 1.25286412273719 1.07506778614932 1.00043133784626 0.770554486264512 0.756242857478422 1.36780671014504 1.15981904581788 1.30880794514169 2.28849156620515 1.62286223821803 1.13590901802349 1.18079326850099 1.54342474370354 1.46175432914057 1.54604104760074 1.37377812518196 1.48273030361839 0.932728516651312 1.38058927842483 0.217766443038536 0.207060689817249 0.224800997890841 0.222762014232544 0.212293103960190 0.212645544813614 0.214199564253136 0.209391848511559 0.213088274311296 0.218058561649956 0.211522499583291 0.218373506156163 0.22669104756619 0.206946821056488 0.214404832110537 0.214611810196559 0.21156981579197 0.219827873500981 0.207722123448549 2 2|0 +|/ 15551536 15552099 15551828.6 15548799 15553238 + gene protein_coding_gene FALSE TRUE AT2G37010.1 ATNAP12 (Arabidopsis thaliana non-intrinsic ABC protein 12) member of NAP subfamily Identical to Putative non-intrinsic ABC protein 12 (WBC-related protein 1) (NAP12) [Arabidopsis Thaliana] (GB:Q9SJK6); similar to ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G53390.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G60740.1); similar to hypothetical protein LOC_Os11g22350 [Oryza sativa (japonica cultivar-group)] (GB:AAX92830.1); similar to Lipocalin; AAA ATPase [Medicago truncatula] (GB:ABE87825.1); similar to ABC transporter family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47708.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.328608492795669 -3.01770808793953 0.0118367521653096 1 2.65263187959952 2.63451225978185 -0.328608492795669 0.119978555325446
AT1G55930_at 6.55812371275628 6.60777206215525 6.30193274110838 6.38752512011971 6.87491749533957 6.383552583171 6.49035603948352 6.44350484230438 6.6016460866383 6.5534551503801 6.19160034024136 6.20201691330987 5.97688056082782 6.29977765673385 5.97628950659562 6.26696696777584 6.18171176309589 6.30504837661358 7.0067875497336 0.201514735904304 0.208387060106663 0.214351300777022 0.208596803298295 0.214276278776444 0.220609153003293 0.206106399107366 0.207968791651744 0.213304954069029 0.213496225617653 0.203508792177691 0.201535700630618 0.208992481931837 0.202217762020399 0.199725412352197 0.199725412352197 0.208557931230864 0.211494659048873 0.205593210518712 1 1|0 +|/ 20925168 20925741 20925515 20922382 20925895 + gene protein_coding_gene FALSE TRUE AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein similar to CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13070.1); similar to Os03g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050588.1); similar to transporter associated domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT81753.1); similar to CBS domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97418.1); contains InterPro domain Transporter-associated region; (InterPro:IPR005170); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.291775132087481 -3.01648471866093 0.0118625257158704 1 2.65071268729524 12.9537936276714 -0.291775132087481 0.0871181182062069
AT2G38330_at 8.47296574010451 8.1253388765265 7.87334038488372 7.40253983110513 8.3216258980192 8.05089279971038 8.64418554389836 8.22995526572338 8.64149764351769 8.62521051334872 8.58545927405184 8.63255669627236 8.1101483928895 8.54794157930847 8.46699948861793 8.61194675978845 8.11317074877638 8.3443865432415 8.71098463241636 0.141285381068244 0.129109638327302 0.134603421796135 0.132079898110228 0.128301268259753 0.138822824721656 0.135613647918868 0.129050377569908 0.133253238466495 0.131604795510142 0.131981795609199 0.136341463199171 0.138912358354504 0.129675037255347 0.127234132248218 0.130522984756942 0.138511771040054 0.135644332806860 0.133903765082268 2 2|0 +|/ 16073415 16074397 16073984.429 16071581 16074515 + gene protein_coding_gene FALSE TRUE AT2G38330.1 MATE efflux family protein similar to MATE efflux protein-related [Arabidopsis thaliana] (TAIR:AT4G38380.1); similar to Os12g0106600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065941.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95621.2); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.344333186263101 -3.01621748120275 0.0118681633194148 1 2.65029344899117 16.683009100061 -0.344333186263101 0.132630423362993
AT4G14560_at 8.27422021781828 8.46813462640416 9.03548775891229 8.98717191892599 9.81028041389276 9.4350202754378 9.54049524962556 9.5855535686162 8.34074442150001 8.60187111536498 9.03318453410481 8.98865553029136 8.94754843375461 8.20859565683482 9.59781917296674 9.19024016191446 9.28722300615852 8.86026126343724 9.47401019857172 0.150905512235051 0.150025403671206 0.151017401959347 0.146250629448972 0.142581730849589 0.146147296400112 0.143610011248554 0.144967399503885 0.164315763871711 0.15322496634054 0.143700827911056 0.144758689431333 0.147561919089795 0.177952522001150 0.146074868081861 0.147897267331799 0.148830322572987 0.147778978397857 0.147353757134398 4 4|0 +|/ 8361212 8361707 8361405.7 8361054 8361982 + gene protein_coding_gene FALSE TRUE AT4G14560.1 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); transcription factor auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein. Identical to Auxin-responsive protein IAA1 (Indoleacetic acid-induced protein 1) (IAA1) [Arabidopsis Thaliana] (GB:P49677;GB:O23312); similar to IAA2 (indoleacetic acid-induced protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23030.1); similar to auxin-responsive protein (GB:AAA16569.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.279269117148367 3.01522059243004 0.0118892174024506 1 2.6487295359969 18.0519119445767 0.279269117148367 0.0739872223194511
AT4G32280_at 6.69826392646665 6.90053926709718 3.20705606521873 3.02671647979485 6.15410416999192 4.82526802791696 3.89265076876646 3.35251444719662 9.69311406914994 7.81586970075526 9.78510026036584 10.1123531510210 9.1900805077215 8.47233163914188 10.0889564172147 9.03617596449818 6.89821920284203 8.28783876822889 9.85438031996795 0.242877382526021 0.235021600981635 0.252185507037668 0.249891235955494 0.236344666331319 0.243500398460371 0.232623120380942 0.243698836753695 0.231904607647706 0.238434186704573 0.229449692295307 0.233625208171340 0.229449692295307 0.230254979176024 0.235769274653254 0.229449692295307 0.253720030864946 0.239579607352804 0.229449692295307 4 4 + 15583673 15584597 15584173.909 15583393 15584775 + gene protein_coding_gene FALSE TRUE AT4G32280.1 IAA29 (indoleacetic acid-induced protein 29); transcription factor Auxin inducible protein. Identical to Auxin-responsive protein IAA29 (Indoleacetic acid-induced protein 29) (IAA29) [Arabidopsis Thaliana] (GB:Q93WC4;GB:O49363); similar to IAA16 (indoleacetic acid-induced protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04730.1); similar to AUX/IAA protein [Medicago truncatula] (GB:ABE81770.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.522472645531449 -3.01516930510490 0.0118903015986350 1 2.6486490764109 13.8096408201413 -0.522472645531449 0.252623679514783
AT3G26380_at 8.09231951651338 8.2646422000316 8.44320373942905 8.50065320968084 8.79329149348661 8.54678715775457 8.45949827395194 8.29089357324206 7.07638634824636 8.06880784004325 8.0477475020668 7.6410340564076 8.02029409369178 8.11120733925401 7.82340977983758 7.96841221820067 7.89015009674385 7.81332510760893 7.87157633024268 0.131721741626476 0.133931631433982 0.133431163402892 0.141616946740457 0.133998159874324 0.142918910730089 0.131624784389472 0.132549088729402 0.139644876502096 0.130083496940094 0.132243090234582 0.128582639272941 0.128582639272941 0.128582639272941 0.135479220898686 0.132094608979001 0.138902324799715 0.135558523905708 0.133705326878126 3 3 + 9663743 9664348 9664059.636 9661302 9664535 + gene protein_coding_gene FALSE TRUE AT3G26380.1 glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein similar to alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G56310.1); similar to Os01g0518500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043203.1); similar to Glycoside hydrolase, clan GH-D; Ricin B lectin [Medicago truncatula] (GB:ABD32283.1); contains InterPro domain Glycoside hydrolase, family 27; (InterPro:IPR002241); contains InterPro domain Glycoside hydrolase, clan GH-D; (InterPro:IPR000111); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) 0.268168096934335 3.01497663142425 0.0118943755443783 1 2.64834680952730 16.2172633273798 0.268168096934335 0.0604918218800638
AT1G14820_at 7.40782033757495 7.28919904513902 5.89901371143025 5.47428747800663 6.98919775424619 7.04466923421576 5.44881252890851 5.18711283659274 4.97826124634941 4.73341581705810 5.32777178321967 5.41165739355136 4.57676749249289 5.20743201773998 5.4948375224266 4.67985041188723 5.24586932971988 5.10490469117112 3.97504821974702 0.252135988000856 0.255374734125224 0.262861611082034 0.251814044415270 0.246293744698739 0.258459245325015 0.252268465433319 0.250097955568351 0.259505586488818 0.246484123123039 0.245799083248809 0.246909044524986 0.250919642991481 0.246673478184652 0.245799083248809 0.248826623017934 0.260349044372872 0.261470978133355 0.248716061072310 1 1|0 -|/ 5105247 5106304 5105784.2 5105013 5106949 - gene protein_coding_gene FALSE TRUE AT1G14820.1|AT1G14820.2|AT1G14820.3 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G01630.1); similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE80207.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.293725213322743 3.01437884204905 0.0119070243328627 1 2.6474089932757 11.1892031614281 0.293725213322743 0.0892578308582261
AT1G73560_at 1.15035708175759 0.691550457451081 0.902187806981388 0.849012004282577 0.712480920311086 0.642752256715904 0.958017630007295 1.22152786967282 1.01152149653340 1.12740961387425 0.777020396622553 0.941293801745909 1.03404143903413 1.17481726280929 0.422806736623693 0.586269444463965 0.886806030408333 0.680902393112008 1.39786814204034 0.224989227525644 0.221679434805141 0.226649590887302 0.222447552147672 0.221679434805141 0.221679434805141 0.221679434805141 0.229641301695606 0.230636278416008 0.222297949208103 0.225566183058496 0.227768209195014 0.223562315899043 0.22307892612579 0.233396869007345 0.221679434805141 0.225272067688264 0.235411834501661 0.228404945892046 1 1|0 -|/ 27653448 27654012 27653798.889 27653356 27654132 - gene protein_coding_gene FALSE TRUE AT1G73560.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid binding [Arabidopsis thaliana] (TAIR:AT1G73550.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE81473.1); similar to Os06g0711900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058554.1); similar to Os06g0686400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058400.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.297346704348153 -3.01402861742408 0.0119144411340210 1 2.64685955628362 1.88694963952338 -0.297346704348153 0.0928113503086594
AT1G77370_at 8.88422774916757 9.34928313027596 9.57935200440208 9.79280605683075 10.1393723033406 9.56310656920608 9.09272674648968 8.74583663016482 8.47171907761255 8.62593920369679 8.65049109272238 8.34940239977397 8.65104514455708 8.55360499285465 7.89966189563027 8.71323804286384 8.95748570904053 8.49646214622135 8.5837785177666 0.126906619940478 0.125301630848034 0.136612617125070 0.129280461545817 0.132151282875009 0.125521916388303 0.131075007478133 0.124125504862847 0.127646625458368 0.124325517293282 0.123715452491742 0.122921688943328 0.122987682750320 0.150769917133844 0.137498014535516 0.122790079620224 0.130869553247314 0.123690333506423 0.125009400647290 1 1|0 +|/ 29078846 29079484 29079040.3 29078737 29079690 + gene protein_coding_gene FALSE TRUE AT1G77370.1 glutaredoxin, putative Identical to Glutaredoxin-C3 precursor (AtGrxC3) (GRXC3) [Arabidopsis Thaliana] (GB:Q9FVX1); similar to glutaredoxin, putative [Arabidopsis thaliana] (TAIR:AT5G20500.1); similar to hypothetical protein [Thellun (GB:ABB45843.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin, eukaryotic and viruses; (InterPro:IPR011899); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.362042832176528 3.01394778941788 0.0119161535122628 1 2.64673275202734 17.9405403292263 0.362042832176528 0.146254647585356
AT4G03156_at 0.966484977118347 1.25527076150673 1.19611711337897 1.25777302337011 1.15345270504323 1.32017995679447 1.04640102206742 1.28960605057629 1.66237380428523 2.04207671803343 1.37087313408465 1.27053247843363 1.28744858602162 1.7332217136646 1.21611349840492 1.20867239317773 1.07177242740596 2.01232979264907 2.42717971342047 0.176089245999516 0.176637117003223 0.17740095053868 0.173337353805573 0.173337353805573 0.175609394092672 0.177555894522981 0.176559814787510 0.179647429655418 0.173944468765119 0.175640847991270 0.178739872937722 0.177463908368983 0.175744646803627 0.17747154728737 0.175743450204743 0.177201125310579 0.175710858769859 0.177414327178987 4 4|0 -|/ 1396088 1396760 1396658.571 1396002 1396784 - gene protein_coding_gene FALSE TRUE AT4G03156.1 small GTPase-related similar to Ras-related GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G08190.1); contains InterPro domain Ras; (InterPro:IPR013753) -0.277533122718303 -3.01323398116617 0.0119312866476056 1 2.64561291480302 2.90578432534527 -0.277533122718303 0.0722169662625337
AT1G62820_at 6.97592034296367 7.07048131955141 7.4262728728697 7.26180140694565 7.44296908063432 7.45239350294619 7.03911400351346 7.2350382604215 7.16987777246058 6.52757941022049 7.29595942106376 6.86301209469603 7.02367451252906 7.09944617046707 7.01870148488571 7.03835980931188 7.25221432148477 6.94563516253734 6.89774843779234 0.167284410041918 0.164330928188352 0.164246539919938 0.170042572381697 0.164709514864891 0.169376389571358 0.166331981368123 0.162371609729308 0.171285673957870 0.184651262076047 0.164948276692063 0.159855556428111 0.166954547118293 0.160830071712325 0.164172013204735 0.164819243882653 0.161212317669222 0.193845087683905 0.171699976739827 1 1 - 23267565 23267892 23267739.545 23267336 23268014 - gene protein_coding_gene FALSE TRUE AT1G62820.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G12310.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.258888783100304 3.01238818898615 0.0119492430132004 1 2.6442860103038 14.2040958048706 0.258888783100304 0.0472245141567541
AT1G31240_at 1.49537345559978 1.66736382901239 1.84865495503687 1.82363661747872 2.17591501190824 2.55049872600178 1.882636268072 1.93205652359047 1.62904156174330 2.02584438850232 2.06971016743929 1.72470735876792 1.76989850370714 1.88873309385416 1.90549308744837 2.01624058576138 2.00658808839092 2.04559980415532 1.53290144319564 0.20369351817468 0.194353937331316 0.200359804179892 0.197231696520839 0.195206161565043 0.196199175859167 0.195968579858110 0.203119617762975 0.206460637110009 0.199194464231552 0.197472471351972 0.193110270966172 0.193583038063304 0.200215887919626 0.194421433491075 0.193110270966172 0.202734272690525 0.201668285026388 0.197151570732626 1 1 - 11164060 11164616 11164397.545 11163839 11164909 - gene protein_coding_gene FALSE TRUE AT1G31240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34340.1); similar to Bromodomain associated family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98992.1); similar to Os12g0574800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067103.1); similar to Os02g0699900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047835.1); contains InterPro domain Bromodomain transcription factor; (InterPro:IPR006565); contains InterPro domain Histone-fold; (InterPro:IPR009072) 0.277213840123941 3.01208128678193 0.0119557653567534 1 2.64380453062879 3.75083382367302 0.277213840123941 0.0719711703027799
AT2G25140_at 4.40867982744825 4.39039303461677 4.64639669656908 4.6121125971397 4.0128327051118 4.06631276693486 3.84290621409076 3.94497785067602 2.8872330113077 3.31518263120735 3.55609183883893 3.7323080963061 3.73324239672469 3.09157411005784 3.07911276527346 3.53756051803366 4.26387047763409 3.06033853371611 3.39857794628222 0.237370707392919 0.246276895026595 0.236592604114385 0.237497375520855 0.238428544159609 0.242919113343955 0.240918840682352 0.235111544008294 0.242613532220132 0.240109546137838 0.233236823648433 0.233236823648433 0.238319514144434 0.238117052906603 0.240186882922792 0.236263703706625 0.233596674703451 0.246598249980489 0.236680881468581 2 2 - 10705018 10705624 10705284.091 10704782 10709231 - gene protein_coding_gene FALSE TRUE AT2G25140.1 CLPB-M/CLPB4/HSP98.7 (HEAT SHOCK PROTEIN 98.7); ATP binding / ATPase Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress. similar to ATCLPC (CASEINOLYTIC PROTEASE C), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT3G48870.1); similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT5G15450.1); similar to ATHSP101 (HEAT SHOCK PROTEIN 101), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT1G74310.1); similar to Chaperone clpB 2 (GB:Q8YM56); similar to ClpB [Phaseolus lunatus] (GB:AAF91178.1); similar to heat shock protein [Solanum lycopersicum] (GB:BAE06227.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain Clp, N terminal; (InterPro:IPR004176); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.247052802769134 3.01174100205541 0.0119630013502693 1 2.64327067786772 7.59412323074284 0.247052802769134 0.0210448576053467
AT2G15280_at 3.6805413472897 4.61835019970777 3.13973425191263 3.19555341180468 4.49373662902396 4.05126158624369 4.92819238337978 4.60775631731544 4.07015872408505 4.22526917898873 4.06828283647568 4.56440342779742 4.10610184445548 4.31340964459984 4.32762153501637 4.28300770804527 3.72782500727742 4.23155539313002 4.62472574306143 0.248652121717757 0.246384560225661 0.244913930675988 0.246654346582781 0.246891266091722 0.251357244911486 0.252701510755046 0.248506459667782 0.253017409895022 0.257613096653952 0.250995278458508 0.2489166138302 0.254964388526193 0.251294724457026 0.244036423785301 0.248341953978781 0.255117829191211 0.244899348352246 0.251261267950909 2 2|0 +|/ 6647437 6648385 6647874.2 6647236 6649432 + gene protein_coding_gene FALSE TRUE AT2G15280.1|AT2G15280.2 reticulon family protein (RTNLB10) similar to reticulon family protein (RTNLB11) [Arabidopsis thaliana] (TAIR:AT3G19460.1); similar to Os04g0670000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054209.1); similar to H0818H01.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86090.1); contains InterPro domain Reticulon; (InterPro:IPR003388)|similar to reticulon family protein (RTNLB11) [Arabidopsis thaliana] (TAIR:AT3G19460.1); similar to H0818H01.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86090.1); contains InterPro domain Reticulon; (InterPro:IPR003388) -0.421290274811158 -3.01163104627817 0.0119653404519714 1 2.64309817439531 8.34413766915708 -0.421290274811158 0.188070268681168
AT1G57790_at 5.85020489320652 5.97853409377465 5.79536433785055 6.06610243358327 7.09458981320795 6.75232310363948 5.55796536378742 5.87214293720149 6.13945871718895 5.43198975797188 5.8873199567141 5.59636903179902 5.60651253881074 5.89196979376877 5.68323514344898 5.79478131488088 5.75829623082263 5.34007184068099 5.54990231420299 0.212156347869529 0.219838948098748 0.209834035875295 0.209978892720042 0.234702742967938 0.219109541182620 0.218615185056108 0.217102742653809 0.220172459029523 0.219277743419713 0.209011438178853 0.216291696704116 0.221558848415041 0.209068891605503 0.209781922750898 0.211262618207389 0.211454512043053 0.215116040039703 0.212317368173587 1 1 - 21408251 21408816 21408555.636 21408073 21409621 - gene protein_coding_gene FALSE TRUE AT1G57790.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G56470.1); similar to F-box protein family-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08724.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.30004282582781 3.01087602167328 0.0119814146402484 1 2.64191365458473 11.8218715776083 0.30004282582781 0.0956698942220782
AT1G25540_at 6.68280413430626 6.24487837103819 6.97604314107952 6.67646366379354 7.01467962401396 6.87572810019447 5.82030663015885 5.63605881193732 5.90738200128495 5.89735838050007 5.58983108060503 5.55598385529679 5.80691243457634 5.5127351428579 5.27492473847734 5.89862291243487 6.48867966091815 5.99902503418683 6.033055904403 0.227206232175335 0.227206232175335 0.242162260643044 0.230862419921131 0.237971912206088 0.239590428026063 0.245857710983328 0.231561463519062 0.242183491653664 0.228826997340769 0.231680276758607 0.233421492228792 0.235458876919496 0.240503214255083 0.233835496018102 0.227206232175335 0.233146826482746 0.233920670494455 0.231904262615606 1 1 - 8969381 8970024 8969642.818 8969052 8974647 - gene protein_coding_gene FALSE TRUE AT1G25540.1|AT1G25540.2 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to putative phloem transcription factor M1 [Apium graveolens] (GB:AAF65166.2); similar to Os09g0306700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062824.1); contains domain SEX-DETERMINING REGION Y PROTEIN, SRY (PTHR10270:SF35); contains domain vWA-like (SSF53300); contains domain no description (G3D.3.40.50.410); contains domain SOX TRANSCRIPTION FACTORS (PTHR10270)|similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to putative phloem transcription factor M1 [Apium graveolens] (GB:AAF65166.2); similar to Os09g0306700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062824.1); contains domain SEX-DETERMINING REGION Y PROTEIN, SRY (PTHR10270:SF35); contains domain SOX TRANSCRIPTION FACTORS (PTHR10270) 0.304811953716683 3.01046132893401 0.0119902525566295 1 2.64126306129196 12.3467560359728 0.304811953716683 0.100129976092459
AT1G71010_at 7.01907620355894 7.01728416270261 6.55659143917438 6.78376411902291 7.77411924034021 7.40509844893765 7.23497173844555 6.96358399179765 6.87063073107597 7.41708705473577 7.9203019848089 8.30775466025716 7.78383085909096 7.99689937089468 7.38873840799761 7.9839625148632 7.50913066044048 7.691659266766 7.63970505682407 0.204228009901023 0.218621448399437 0.22049764892944 0.210675382962601 0.206805781936597 0.211991089637949 0.208390993058928 0.204673834836487 0.210345608487974 0.204331206335207 0.209681918898303 0.209495455047326 0.203418402583608 0.203411929036723 0.213888150092656 0.210676782352009 0.225745793866625 0.203411929036723 0.213504071440975 1 1|0 +|/ 26791633 26792343 26792122.6 26786501 26792630 + gene protein_coding_gene FALSE TRUE AT1G71010.1 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G33240.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34260.1); similar to finger-containing phosphoinositide kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46198.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498) 0.292404027918601 3.00883541941986 0.0120249673544987 1 2.63871222357904 14.6602739995901 0.292404027918601 0.0884846436635357
AT2G20720_at 2.76058907938324 2.95353270325003 3.45388468493868 3.39291301540930 3.00692393622182 3.65156891239851 2.96767058550289 2.88002015775255 3.48137908296876 3.11519515758323 3.68390342482111 3.39218002313206 3.51261978802647 3.26630039614905 3.52811251181387 3.35782334940947 3.49720337420637 3.46128228956376 3.29757535945094 0.177927699242060 0.184105139195368 0.187429594074962 0.179424216709821 0.185184833319170 0.187407666784772 0.17951283252501 0.185045501438353 0.177763339178482 0.181963687164829 0.180127109620450 0.181214884108840 0.183081973267174 0.187350626582067 0.177156266672469 0.180316674542909 0.180717934484571 0.183707117144041 0.179164373283893 2 2 - 8935193 8935604 8935404.727 8934903 8937193 - gene protein_coding_gene FALSE TRUE AT2G20720.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20710.2); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); similar to Os10g0501300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064985.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.325123891871264 3.00879851895902 0.0120257563916207 1 2.6386543312651 6.51362689001108 0.325123891871264 0.117905297080842
AT2G18760_at 2.25356351135759 2.15828087386677 2.18211629051840 2.27693978551456 2.65974065701024 2.85253498096209 2.34326808249266 1.78979972683418 1.77433176568478 1.67021580636429 2.01252497915015 2.05456264558459 2.01200122753491 1.95967382107953 2.0998711004903 2.11151483139853 2.59713522654698 2.05880896930525 2.11121438269730 0.196413525791557 0.198077053904156 0.208045641129324 0.20215639448581 0.198579145305404 0.202651297817245 0.195031425434455 0.202161056792935 0.205481537518611 0.205458387346064 0.204575776455683 0.193765106310792 0.205630223595167 0.205044468058123 0.193765106310792 0.194928790961668 0.208486017390203 0.198238217216367 0.202801896098156 2 2 + 8140012 8140442 8140212.727 8136236 8140584 + gene protein_coding_gene FALSE TRUE AT2G18760.1 CHR8 (chromatin remodeling 8); ATP binding / DNA binding / helicase similar to CHR24 (chromatin remodeling 24), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT5G63950.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_501912.1); similar to putative RAD26 [Oryza sativa (japonica cultivar-group)] (GB:BAD45511.1); similar to DNA repair protein, SNF2 family (ISS) [Ostreococcus tauri] (GB:CAL52480.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.308972914208841 3.00859346495955 0.0120301419824794 1 2.63833262631309 4.29712161442876 0.308972914208841 0.104058554794450
AT3G13390_at 2.38576953541327 2.37518567564059 2.67135241347556 2.38049770956657 1.76166270020126 1.90478719380821 2.01353818920481 2.29931531958556 3.47852331665438 3.23289640835917 3.19658383313866 2.63849958054175 2.99057916673948 2.35163338678425 2.68647728554297 3.11865388313589 2.79334949906143 3.16312767557297 3.30006442105353 0.238209162705763 0.237456304435006 0.238347520430601 0.245177061093131 0.244481111259301 0.237456304435006 0.244278195949455 0.256584848817743 0.249303994364886 0.249726743452956 0.238907106888555 0.247092905699252 0.241775542695333 0.243275949166124 0.243326132693392 0.237456304435006 0.241525346586699 0.241120157636685 0.260673350754379 3 3|0 -|/ 4351447 4352079 4351745.8 4351052 4353400 - gene protein_coding_gene FALSE TRUE AT3G13390.1 SKS11 (SKU5 Similar 11); copper ion binding / oxidoreductase similar to SKS12 (SKU5 Similar 12), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G55570.1); similar to SKS14 (SKU5 Similar 14), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G55560.1); similar to SKS13 (SKU5 Similar 13), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G13400.1); similar to L-ascorbate oxidase homolog precursor (Ascorbase) (GB:Q00624); similar to Bplo [Brassica napus] (GB:CAA47177.1); similar to Bplo [Brassica napus] (GB:CAA47178.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.279337759452922 -3.00810816992996 0.0120405276532623 1 2.63757125513391 5.32627580253049 -0.279337759452922 0.0748072028306807
AT1G18260_at 8.2045029527938 8.41368037036506 8.73146294131434 8.55147455920802 8.40792325694557 8.42719917650154 7.36346871945421 7.64898334636774 7.98119841184563 7.49493820799662 7.55257866894607 7.58171208506114 7.90965781235614 7.56082841568421 7.4973761970249 7.73903555416208 7.69673919094066 7.80398874780379 7.74812352200094 0.154592517807409 0.155669144662128 0.153757212599826 0.156781251968278 0.150750312275985 0.163186985312146 0.153480681927697 0.153601723195288 0.151430890897126 0.158209316119835 0.155637592900263 0.149468255342157 0.159629991983964 0.157239419216746 0.150889024554006 0.149159133613650 0.165671426274957 0.151939772934511 0.152900442658931 1 1|0 -|/ 6279059 6279837 6279406.7 6278841 6282096 - gene protein_coding_gene FALSE TRUE AT1G18260.1 suppressor of lin-12-like protein-related / sel-1 protein-related similar to suppressor of lin-12-like protein-related / sel-1 protein-related [Arabidopsis thaliana] (TAIR:AT1G73570.1); similar to Os03g0259300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049611.1); similar to SEL-1 [Glycine max] (GB:BAE02648.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.27408783648174 3.00741988743742 0.0120552729134776 1 2.63649141578960 15.923166731008 0.27408783648174 0.0687968304360566
AT4G27830_at 9.10653140320379 9.08758875849804 9.95356237440703 10.0540738524158 9.52671023426966 8.87151029121388 9.67061043962642 9.46525306313302 7.97398980978146 8.4562891903624 8.1653416006922 8.24327941832319 8.50994349212437 8.76387405349529 7.90110511796337 9.07222070351658 9.12251698683208 8.57789634069032 8.0441310046577 0.141320877868404 0.143543375827899 0.144379426559813 0.140662200175399 0.140267090216720 0.139495830121700 0.141139780856748 0.145170129391826 0.150965126220358 0.136085325335288 0.141276672007131 0.137540274697438 0.143779881279992 0.140535706958031 0.142062984327923 0.138409810029057 0.145763650011205 0.13981152778025 0.135440016949130 4 4|0 -|/ 13861809 13862682 13862279.125 13861724 13864506 - gene protein_coding_gene FALSE TRUE AT4G27830.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27820.1); similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G62750.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G62740.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.327676908949377 3.00739863989064 0.0120557283950125 1 2.63645808064683 17.8183094933319 0.327676908949377 0.120135340153908
AT1G11580_at 8.11592614772539 8.28523490767808 5.5981028514144 6.46656726322851 6.59709226027451 6.5042436811395 8.25530806366871 8.70802767586543 6.07937149905307 8.09173901926617 8.32274183207296 8.82927372835404 8.28133424392557 8.75358852587378 8.44906777879275 8.5450802689232 7.7455445839794 8.53174939488511 7.366397502847 0.170355984083002 0.160326888934202 0.203126918217954 0.181438752045662 0.178050076235428 0.170833851263913 0.166077950683288 0.172229084197507 0.188465903480078 0.1735683375431 0.162547102936500 0.162560126124708 0.160326888934202 0.165135357396888 0.18376253149553 0.160326888934202 0.174712391835713 0.173645059114437 0.184176781668614 1 1 + 3890098 3890484 3890235.625 3888690 3890811 + gene protein_coding_gene FALSE TRUE AT1G11580.1 pectin methylesterase, putative similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectin methylesterase [Sesbania rostrata] (GB:CAD29733.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.398247240254034 -3.00734224945890 0.0120569373152094 1 2.63636961002802 15.1220462988691 -0.398247240254034 0.172749108038895
AT3G57020_at 8.84846616996103 9.00757824796704 9.47187244496347 9.56930792992575 9.66710556737918 9.46179688375637 10.3532862516562 10.3319760938462 9.091479952566 9.3464081981882 9.83969972921767 9.681260481655 10.0641888565941 9.9891274711161 9.29522416145722 9.53975623758657 10.2159945789257 10.0333278162817 9.22707820288017 0.103027323625601 0.102040916807562 0.0988109888557895 0.100713999604850 0.103999964832802 0.107856704147346 0.106952105344187 0.102806229122869 0.117691142054835 0.100723024198679 0.0990593457098258 0.102968174394214 0.100667633972542 0.101696215126922 0.102955564440530 0.102186492819517 0.107911327639182 0.106479290966385 0.100617343470786 3 3 - 21109521 21110044 21109826.091 21109294 21111339 - gene protein_coding_gene FALSE TRUE AT3G57020.1|AT3G57020.2 strictosidine synthase family protein|strictosidine synthase similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57010.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); similar to putative strictosidine synthase [Oryza sativa (japonica cultivar-group)] (GB:AAR87254.1); similar to Os03g0750700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051286.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141)|similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57010.1); similar to putative strictosidine synthase [Oryza sativa (japonica cultivar-group)] (GB:AAR87254.1); similar to Os03g0750700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051286.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.258930490520678 3.00627496957757 0.0120798411472681 1 2.63469515421465 19.1159126325898 0.258930490520678 0.0481502967383744
AT4G40000_at 2.1152852128174 2.16211142497779 1.89735761732403 2.24648709478413 1.84936084235823 1.92619147082267 2.45143974471948 2.55098999866148 2.42151044433727 2.54368586893745 2.02048896322406 1.84567452679928 1.78535903565253 2.46950231275158 2.14242504218265 2.14525326618214 2.21683264415465 2.48988557166219 2.05672506548555 0.188588365393332 0.187111312466081 0.195228109408544 0.193160067477791 0.19376009000115 0.188772025861386 0.195327190923333 0.189528819606449 0.185161536968809 0.189955029353925 0.189471686848328 0.193022031102487 0.202606799963806 0.190156344856358 0.190419979823461 0.197163425323764 0.194196500902002 0.192391645830829 0.194987907455974 4 4|0 -|/ 18544044 18544717 18544371.4 18543887 18547517 - gene protein_coding_gene FALSE TRUE AT4G40000.1 NOL1/NOP2/sun family protein similar to NOL1/NOP2/sun family protein [Arabidopsis thaliana] (TAIR:AT2G22400.1); similar to tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) (ISS) [Ostreococcus tauri] (GB:CAL56514.1); similar to Os09g0471900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063445.1); similar to Os08g0484400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062081.1); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) -0.270660064116200 -3.00617606427974 0.0120819658756264 1 2.63453998102089 4.3899369907646 -0.270660064116200 0.0647273684332876
AT3G18060_at 8.72673307126 8.9566202892856 8.63219295316727 8.91803385013145 8.80515885623734 8.745258944028 8.90314565035963 8.8294333641094 8.33301471407992 8.4671922245136 9.16765291591294 8.98909509342318 9.26911567703034 9.12006435353923 8.89122356339281 8.71925513560867 9.09570594118923 8.7813062583668 8.34787074529643 0.141906189117686 0.141884061515892 0.144446229190791 0.146023754965941 0.144059705213867 0.141008285931825 0.142248526477097 0.144676253816492 0.153154759549002 0.142892662802943 0.143697586671235 0.137074638868584 0.143218260925804 0.141856772371564 0.147541317234140 0.138353944681152 0.151100131535558 0.140475062693560 0.141642977894943 3 3 + 6186113 6186761 6186412.727 6183779 6187077 + gene protein_coding_gene FALSE TRUE AT3G18060.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G01330.1); similar to Os01g0125800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041893.1); similar to hypothetical protein MtrDRAFT_AC139526g3v1 [Medicago truncatula] (GB:ABE80134.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) 0.271331431574303 3.00613548490633 0.0120828377291129 1 2.63447631573532 17.5080070866246 0.271331431574303 0.0655725683042348
AT1G20190_at 6.51360265333644 6.89114348893016 5.52850475851135 5.72149977425859 7.31759981302255 6.29644595004575 7.01228941488546 7.60091835518971 7.48728716913295 7.25318528361461 9.57300239865228 9.65276718489193 9.7252381951457 9.70969410981006 9.96621531114058 9.03683824324613 7.9366844074892 9.09459915216472 8.12024958929325 0.276770865552207 0.253435659595674 0.29233274640743 0.269101657808041 0.254372967457676 0.265240081813492 0.267580993441029 0.250859893555056 0.269005849532445 0.252526449880870 0.254005123943451 0.262144056310585 0.255500902458827 0.257680815986945 0.262338205171501 0.250859893555056 0.265022486336432 0.25617312418241 0.25287239265178 1 1 - 6998781 6999427 6999146.818 6998480 6999808 - gene protein_coding_gene FALSE TRUE AT1G20190.1 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN A11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A11 precursor (AtEXPA11) (Alpha-expansin-11) (At-EXP11) (AtEx11) (Ath-ExpAlpha-1.14) (EXPA11) [Arabidopsis Thaliana] (GB:Q9LNU3); similar to ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) [Arabidopsis thaliana] (TAIR:AT1G69530.2); similar to expansin [Glycine max] (GB:AAO15998.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.464081645255711 3.00569080939306 0.0120923958021895 1 2.63377865978945 15.0888108040214 0.464081645255711 0.216769421339042
AT4G16710_at 6.54632363630686 7.01411782160275 6.95231961801913 7.0023422810819 7.77644092045068 7.04384506624341 6.88264221903658 6.48257927822893 6.10386535175284 6.63741279072055 6.75163362829061 6.92542837627671 6.81297983387489 6.99021101192202 6.46044668367372 6.86241076502883 6.65945487966791 6.75378669400497 6.64846844671212 0.15569456513516 0.150222377886274 0.161321901448168 0.151016987894575 0.152939723138984 0.155746675731469 0.149065445697710 0.153787382570569 0.162248804448128 0.152756795328054 0.157298396297272 0.150339959836232 0.149065445697710 0.152894113839629 0.160746777971521 0.149642780205379 0.154427402454112 0.149065445697710 0.150059785915786 4 4|0 +|/ 9398956 9399611 9399381.333 9398570 9399823 + gene protein_coding_gene FALSE TRUE AT4G16710.1|AT4G16710.2 glycosyltransferase family protein 28 similar to Os02g0467700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046820.1); similar to PREDICTED: similar to glycosyltransferase 28 domain containing 1 [Gallus gallus] (GB:XP_420312.2); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235) 0.38805817684281 3.00528245057005 0.0121011799821495 1 2.63313797958572 13.5827227786984 0.38805817684281 0.165814970859667
AT1G08540_at 9.61769946171219 9.57129876342585 9.34938717967655 9.32763864689705 9.62696693543596 9.45200855810922 10.1173790956494 9.94303274400565 10.1650533137252 10.1413479817121 10.1098254009272 10.1342211535353 9.733687561615 9.9373577052033 10.1517929158344 10.0271409924925 9.68319966225955 9.91860063851368 9.99636692035336 0.106279887543868 0.0997253949445144 0.104560071512302 0.101955565690248 0.097626745425041 0.0982824109797254 0.100754207997871 0.100100796955285 0.113389062104906 0.098338329586785 0.102464171334619 0.0997610648325736 0.100323528371513 0.101815431045621 0.0999054382271793 0.103541804915892 0.107512983818195 0.108236077841021 0.102594601477622 1 1|0 +|/ 2705944 2706486 2706215.444 2703339 2706848 + gene protein_coding_gene FALSE TRUE AT1G08540.1 SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme similar to SIGF (RNA POLYMERASE SIGMA-70 FACTOR), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G36990.1); similar to sigma factor [Spinacia oleracea] (GB:CAD20831.2); similar to sigma factor 2 [Sinapis alba] (GB:CAB83106.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 region 1.2; (InterPro:IPR009042); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.256148335483941 -3.00486332406255 0.0121102024762976 1 2.63248040394231 19.6571269193112 -0.256148335483941 0.0436540834731454
AT1G28150_at 8.88239604544794 9.00127649119466 8.62212186012231 8.69136828131002 9.6393117954515 9.07658258415948 8.76784866685212 8.66990880060899 8.3629237253922 8.2904843631356 8.78092644869894 8.8081235824331 8.66124437664898 8.82155361606081 8.66096284737923 8.81319322459204 8.64880476379756 8.65625615778966 8.23687928792525 0.126430727910471 0.121177654708652 0.117306247090239 0.124695648649974 0.122287829235403 0.121303121661926 0.125594261220481 0.116827667128144 0.125189617245375 0.119688537665287 0.121555910877693 0.117117764387893 0.116758455920702 0.121051995369555 0.121554612647553 0.117238771868690 0.13156883143477 0.126298797717439 0.118403971125684 1 1|0 -|/ 9835126 9835799 9835389.8 9834930 9835891 - gene protein_coding_gene FALSE TRUE AT1G28150.1 similar to Os04g0528100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053373.1) 0.305804648796131 3.00353613731735 0.0121388174635917 1 2.63039814285813 17.4329246086397 0.305804648796131 0.101673703395870
AT1G13110_at 11.3255251040023 11.4770477427943 11.2555488554665 11.3012434634261 11.962136683641 11.7474072938191 10.7883001322317 10.7181401573412 10.7095654234437 11.1133569119657 10.9484426475624 11.2313337048532 11.3258245149599 10.8450720418008 10.8731720233258 10.9492190472509 10.7709019464117 11.1167648742532 11.1173001080784 0.0740726422139587 0.0707114304419217 0.0721271329680719 0.0716040730315248 0.0754869772781166 0.0731344098553152 0.0721340269775158 0.071395187520492 0.0766946362097845 0.0730520067881126 0.0697343500484119 0.0701659432407604 0.0709427824596914 0.0738399861982851 0.0716605786884563 0.0697343500484119 0.074595636667273 0.0712967632366656 0.0722796541382832 1 1 + 4468256 4468816 4468538.727 4467218 4469031 + gene protein_coding_gene FALSE TRUE AT1G13110.1 CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7); oxygen binding member of CYP71B Identical to Cytochrome P450 71B7 (EC 1.14.-.-) (CYP71B7) [Arabidopsis Thaliana] (GB:Q96514); similar to CYP71B23 (cytochrome P450, family 71, subfamily B, polypeptide 23), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26210.1); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.258423996109401 3.00337737931498 0.0121422449489332 1 2.63014906167428 22.315751428031 0.258423996109401 0.0477324292011891
AT2G37020_at 3.52978839142343 3.50534786772582 3.33300683282429 3.26514816063159 2.91803893355432 2.81377510004289 3.96855794709625 3.41040449867923 2.85775620896681 3.06415170114787 2.69781839939823 2.91560408852652 2.85330494177758 2.84771613503503 3.33544849805171 3.33544178912674 2.71964121558768 2.79138039687306 3.14355380882791 0.199693836046115 0.201189613923568 0.195621880932902 0.198444130442678 0.202713566347428 0.196482533854709 0.207097160491320 0.202955214225371 0.202001066708879 0.197936746990963 0.200058009699138 0.198838651119589 0.203777394292737 0.208234795760310 0.197434228871458 0.198510666160434 0.204593043303343 0.196516114127630 0.199380800581137 2 2|0 +|/ 15553923 15555846 15554997.2 15553604 15556116 + gene protein_coding_gene FALSE TRUE AT2G37020.1 translin family protein similar to Os10g0443200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064703.1); similar to Translin family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47710.2); contains InterPro domain Translin; (InterPro:IPR002848) -0.302904279700853 -3.00320981218495 0.0121458636763117 1 2.62988615924822 6.32244096951119 -0.302904279700853 0.09905144012669
AT2G36090_at 3.57151758642981 3.13372831494794 3.72314021689082 3.62965424107433 3.40094145122668 3.20748450356581 3.26135214694566 2.68388260658028 3.23191864696105 3.19041392565236 3.33754276157965 3.54947755919281 3.11121446988471 3.70766330256361 3.64061786830903 3.36429405647667 3.68173878399107 3.56688634714439 3.00305538512034 0.179478434834319 0.181270300069705 0.179717345548135 0.188693327486956 0.189580272015049 0.175260039954562 0.174830211885974 0.181115870974623 0.179352234309725 0.184272992757903 0.190347765586767 0.178905157105229 0.176589386130245 0.185234150342069 0.183251577971360 0.174830211885974 0.185486863590168 0.181254881956679 0.176219971049089 2 2 + 15166069 15166614 15166246.273 15165640 15166718 + gene protein_coding_gene FALSE TRUE AT2G36090.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G27310.1); similar to Os11g0155100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065788.1); similar to H0622F05.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66419.1); similar to OJ991214_12.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE01513.1); contains InterPro domain GPCR, family 2, secretin-like; (InterPro:IPR000832) 0.34040917359749 3.00231153445893 0.0121652811484393 1 2.62847681234576 6.64482532323466 0.34040917359749 0.13080182357382
AT1G63670_at 5.33447564324709 6.0829888860443 4.46132697809563 4.72850193715173 5.90676619932511 6.025270371942 6.08148411038129 6.04464693732881 4.30131931288595 4.87227100417434 4.81261981626695 5.17183968696583 4.4659216044586 4.03023252176893 4.92391888049405 4.67569305106527 4.99484850779678 4.07757914986979 5.04996708924964 0.233392190449309 0.231783543342870 0.232698726290343 0.235429478584764 0.231783543342870 0.240273296463418 0.235330175718424 0.240622040249017 0.245706316420846 0.235578074203849 0.238758814148066 0.231783543342870 0.237895663959237 0.231841047715449 0.23222958726011 0.240065213333662 0.235698032789010 0.233917474933317 0.234037163802037 1 1 - 23611361 23611847 23611515.727 23611085 23614316 - gene protein_coding_gene FALSE TRUE AT1G63670.1|AT1G63670.2|AT1G63670.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32828.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain gb def: Hypothetical protein At4g28760 (PTHR21726:SF7) -0.351268336194647 -3.00222763867671 0.0121670962650814 1 2.62834518419356 10.2758163601590 -0.351268336194647 0.13920467564294
AT4G24090_at 7.1096788676692 7.51755375559092 6.51060537251832 6.96701312677371 7.39275448221504 7.00950669687099 7.97279774309998 7.45862834208637 7.72140362389387 7.18608419180763 7.41522525780914 7.72616233917126 6.70980303611979 6.98814116051354 7.25735607154721 7.49265188806039 7.16849561689494 6.89531472346821 7.30024096613904 0.226930069037856 0.213753975189249 0.235929782473915 0.226657731466783 0.218981275904781 0.213753975189249 0.225160108012024 0.222186711587501 0.233890184361641 0.221295142226109 0.220790735824619 0.218603352688743 0.226689150582348 0.241732508089362 0.223979040809720 0.216237835873334 0.233194548357087 0.230674207596525 0.220007491312205 4 4 + 12513639 12514451 12514014.3 12512746 12514602 + gene protein_coding_gene FALSE TRUE AT4G24090.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33764.1); contains domain Metalloproteases ("zincins"), catalytic domain (SSF55486) -0.370313628216277 -3.00182637551729 0.0121757815205363 1 2.62771562202609 14.5469273095089 -0.370313628216277 0.153416546455327
AT3G27150_at 1.23953884251966 1.02834446161428 1.49937608947959 1.35115941565236 1.40772896321971 1.49650046018247 1.17962798560322 1.18360267998677 1.59084950907559 1.47614678460966 1.33200626296089 1.65927408282420 1.57951912533044 1.47877111040482 1.49588577310556 1.52319446396742 1.86878949874049 1.69749052442201 0.966219741886652 0.186973985622015 0.190938352670703 0.191127157332998 0.192855626845459 0.186781227852481 0.192481705647783 0.189932793736592 0.188378875523778 0.187069186955177 0.186527023748283 0.190778237939083 0.188018221224033 0.187339760892993 0.19191896961774 0.190607334697365 0.19716106195592 0.189290227073838 0.191609106689167 0.186527023748283 3 3 - 10010977 10011445 10011236.091 10010679 10012878 - gene protein_coding_gene FALSE TRUE AT3G27150.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G40680.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE79891.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.257936874865697 3.00131272046002 0.0121869085973667 1 2.62690972014562 2.76012071248731 0.257936874865697 0.0472244032475352
AT3G47940_at 3.93858829011193 4.3922659725544 3.65993566306847 3.89895757878062 4.21797964366949 4.55255229695598 4.33473374991379 4.52056002497274 4.60346730133592 4.32675602821905 4.32584995222892 4.05660152163057 4.0494160730888 3.97040413557958 3.98096891952935 4.16732119652484 3.21835771796926 4.02405395399934 4.24436646588452 0.184718927283797 0.182440425726243 0.190190161654343 0.188451305307566 0.182440425726243 0.18716632188271 0.189981443217273 0.18951160625458 0.191074626649086 0.18414047639114 0.185371306569560 0.183859927726696 0.189677465721909 0.185165981412574 0.185132361559654 0.182440425726243 0.196506432354881 0.187899160774958 0.202569832201902 3 3 - 17699217 17699908 17699498.545 17698941 17700534 - gene protein_coding_gene FALSE TRUE AT3G47940.1 DNAJ heat shock protein, putative similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G28480.1); similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to potyviral capsid protein interacting protein 2a [Nicotiana tabacum] (GB:AAQ82702.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.315794480881950 -3.00097197218312 0.0121942957286565 1 2.6263750998493 8.37227246031942 -0.315794480881950 0.110731346911528
AT3G04500_at 6.561968957263 6.53911035973153 6.57262816543032 6.56678234694513 6.57193982515346 6.40023025726719 6.7066614314366 6.43670606270751 5.87871883814338 5.63371867598503 6.70497927407794 6.4395840369647 6.10379069556941 6.50767015508595 6.53628309958889 6.50187944934545 6.16946227024325 6.15420087821151 5.97729430629603 0.200252574976942 0.192493330477226 0.194972700632612 0.193916114885232 0.192584848448857 0.195044943273654 0.196585872504128 0.197035441257648 0.200756470241183 0.198978400999934 0.192086744083009 0.193609962394728 0.194453651502963 0.203158808425563 0.193030134036738 0.190736847604606 0.196560421756407 0.200214108884259 0.196963649137752 3 0|3 /|- 1212485 1213229 1212910.222 1211768 1213861 - gene protein_coding_gene FALSE TRUE AT3G04500.1 RNA recognition motif (RRM)-containing protein similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to Os08g0567200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062547.1); similar to MGC79565 protein [Xenopus tropicalis] (GB:NP_001007900.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.263302035746054 3.00077697206256 0.0121985251952785 1 2.6260691520145 12.6543243453389 0.263302035746054 0.0555170489877064
AT3G18460_at 1.92119651332477 2.12524631676317 2.02521441886357 2.10510065025262 1.62284273708525 1.91216089905118 1.92312516710316 2.33056537106011 2.24839067494031 2.45616261705836 1.94503782889133 2.16209432070864 1.71004226088777 2.05747702709057 2.25629362525577 1.62399125531903 1.74152566940353 1.95679295753044 2.40033299049667 0.203118573707710 0.212390703262294 0.211977967899654 0.215293057117682 0.203118573707710 0.207241603065101 0.208411938310124 0.209351970050924 0.210306688193049 0.209141203312385 0.211143913491918 0.204358115766997 0.208243665941529 0.209201065393816 0.210196302189559 0.203239967996782 0.210213257290913 0.208975566001674 0.213655288403342 3 3|0 -|/ 6333064 6333926 6333515.444 6333054 6333954 - gene protein_coding_gene FALSE TRUE AT3G18460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18450.1); similar to ORFX [Lycopersicon esculentum] (GB:AAF74286.1); similar to fw2.2 [Lycopersicon pennellii] (GB:AAO12196.1); similar to Os02g0580000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047232.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) -0.297671112556102 -3.00022781072311 0.0122104442113764 1 2.62520753658717 4.14565765700515 -0.297671112556102 0.0944267585064996
AT2G05320_at 5.80840309778505 6.29347193616772 6.48799461953342 6.59831194292429 6.0386337954593 5.64434440582833 4.9681348867682 5.04233075770992 5.29489548412867 4.50442112836216 4.98739708019587 5.10269299110201 4.39955191852676 5.27459200212629 4.7063661208903 4.87394667687725 4.71649865141528 5.13546298466287 4.99888691995234 0.238497331725385 0.253594078698267 0.23375710896793 0.234673129129680 0.245218899322842 0.240872895012683 0.23664782999409 0.232239233830595 0.231512959571833 0.235170353771225 0.230769030833008 0.230481748054288 0.229192899050440 0.227327044461052 0.235922550195364 0.229191779006719 0.252004687811939 0.239628588156883 0.232787048349580 2 2 + 1936728 1937280 1936981.364 1936013 1937461 + gene protein_coding_gene FALSE TRUE AT2G05320.1 beta-1,2-N-acetylglucosaminyltransferase II similar to beta 1,2 N-acetylglucosaminyltransferase [Populus alba x Populus tremula] (GB:CAI72505.1); contains InterPro domain N-acetylglucosaminyltransferase II; (InterPro:IPR007754) 0.315532531869403 2.99996587860193 0.0122161333296775 1 2.62479657298425 10.7763522122915 0.315532531869403 0.110596802647892
AT4G12700_at 2.68387559690403 3.35111187093788 2.41178216872265 3.04925965040001 2.55603099147331 2.80009377599887 3.82667445807636 3.9423915569104 3.40461633920709 3.74798710769923 3.26427732878533 3.7947288633551 3.77168107070903 3.61182392151297 3.54347532506856 3.4017414043982 3.28075077477252 3.15179648742755 3.36851586025446 0.181510019040872 0.185537598536790 0.194539268626143 0.187135441449478 0.18165561854802 0.181111916896121 0.180454570287480 0.184690375354988 0.197685330502485 0.178695226501787 0.180062830922861 0.180171030795570 0.183782573544744 0.190098383592440 0.182221713497360 0.179571986518093 0.181355568676112 0.182019549432522 0.181612024232388 4 4 - 7482647 7483125 7482923.636 7482463 7484402 - gene protein_coding_gene FALSE TRUE AT4G12700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04280.1); similar to Os10g0456400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064754.1); similar to Proteinase inhibitor I4, serpin [Medicago truncatula] (GB:ABE79305.1) -0.388113548054196 -2.99932319513408 0.0122301036229954 1 2.62378821920315 6.56993959170656 -0.388113548054196 0.166397154955131
AT3G62690_at 3.23560492979345 3.55288036660905 3.05945740395304 2.90738779068054 3.31213755573116 3.55574176449841 2.84775337291205 3.31081836390377 3.24059193540561 2.87388261656868 3.98100626561904 4.05571864791933 3.41701373780855 3.76791576747959 4.23988920002577 3.74667319120719 3.3431107168824 3.22435945707925 3.08476891956236 0.203384939999349 0.201097164058518 0.210958407181734 0.201097164058518 0.209841006495289 0.220839813052400 0.207279845618704 0.212056711994218 0.213811059872558 0.214181186257422 0.205319613331621 0.206118275989842 0.202563216257230 0.201097164058518 0.208077385427959 0.203833517813023 0.220749897240531 0.206358302908185 0.206915585297163 3 3 - 23196831 23197296 23197112.091 23196324 23197677 - gene protein_coding_gene FALSE TRUE AT3G62690.1 ATL5 (Arabidopsis T?xicos en Levadura 5); protein binding / zinc ion binding Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. Identical to RING-H2 finger protein ATL3L (RING-H2 finger protein ATL5) (ATL3L) [Arabidopsis Thaliana] (GB:Q9LZJ6;GB:Q9XF64); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G47560.1); similar to RING-H2 subgroup RHE protein [Populus alba x Populus tremula] (GB:AAW33880.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.313731626450815 2.99910872617098 0.0122347692124073 1 2.62345172205721 6.61691037526761 0.313731626450815 0.109115194585415
AT2G22490_at 5.2216637895158 5.29458506883632 4.99785312055492 5.3418919301389 4.90776870881159 5.22760711070801 4.25075911573572 5.3774103240131 4.93835669689053 5.04118425902959 5.74595722239354 6.04344146313176 5.3232106094852 5.79656211946999 5.72764083788832 5.96565193015585 5.47786555084629 5.57408130103992 4.65923593616309 0.198512086560286 0.200931833061786 0.19940712789751 0.198506584498096 0.205663197912229 0.206862664488554 0.209764217976972 0.203405780388806 0.213117041334018 0.210882846162109 0.206073284593788 0.199739344207069 0.207914050019356 0.201920765771393 0.202695999227041 0.206182142047970 0.211331460504966 0.205031717112487 0.201374642599097 2 2 - 9561282 9561954 9561614.364 9560883 9563221 - gene protein_coding_gene FALSE TRUE AT2G22490.1 CYCD2;1 (CYCLIN D2;1); cyclin-dependent protein kinase regulator/ protein binding encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A. Identical to Cyclin delta-2 (CYCD2) [Arabidopsis Thaliana] (GB:P42752); similar to CYCD4,1 (CYCLIN D4,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G65420.1); similar to cyclin D2.1 protein [Nicotiana tabacum] (GB:CAA09852.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.454942362484206 2.99796025558902 0.0122597837567097 1 2.62164978930462 10.3706392343705 0.454942362484206 0.211616898379697
AT2G31740_at 6.3493422307517 6.920177853234 6.08314537219194 7.07615213723232 6.62675455743278 5.78572791156721 6.13748590051678 6.51700569782204 6.44319877368357 5.97144322207541 5.03881853628883 5.56183150036433 5.67161829344186 5.69875453315491 4.7230656370116 5.69302436062109 4.68682985312074 5.58587582588276 6.45391665837234 0.250915536842698 0.249035559041343 0.260598886902092 0.261482801269291 0.254285755831682 0.263529104543955 0.258790546859307 0.25401837165983 0.257875881382091 0.250502065252722 0.249035559041343 0.249035559041343 0.257270482512700 0.249285487172217 0.257299369746384 0.249035559041343 0.263073808954454 0.249035559041343 0.252394121884249 2 2|0 -|/ 13498247 13499019 13498546.8 13497985 13502187 - gene protein_coding_gene FALSE TRUE AT2G31740.1 similar to spermidine synthase-related / putrescine aminopropyltransferase-related [Arabidopsis thaliana] (TAIR:AT5G04610.1); similar to putative spermine/spermidine synthase [Medicago truncatula] (GB:ABE91499.1); similar to Os04g0379300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052588.1); similar to putative spermine/spermidine synthase [Glycine max] (GB:AAQ62585.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.522550079933205 -2.99792405290208 0.0122605731158202 1 2.62159298764404 12.2479723920250 -0.522550079933205 0.254530223153761
AT4G27380_at 5.62722296297034 5.78394377519354 5.7990727953937 5.55461280036621 5.32147419873332 5.01324100131532 5.74453569635144 6.500955514099 3.72352589808682 4.08186829697753 3.64701369091028 4.44066802746352 3.33906289636756 3.71361174901129 4.06570326200017 3.64880606975844 3.59298624868281 3.13244464859161 4.00211835850695 0.241806022010058 0.249831036086541 0.244494323303686 0.241201364436590 0.236415759467749 0.255126272340601 0.241619328391477 0.249020574019226 0.247044069914319 0.246182575638379 0.236415759467749 0.239386837925051 0.242770101595017 0.242580469229116 0.236703537862613 0.236415759467749 0.244677592396710 0.2374642643451 0.240537589214966 4 4|0 +|/ 13701379 13702923 13701936.25 13701250 13703157 + gene protein_coding_gene FALSE TRUE AT4G27380.1 similar to hypothetical protein MtrDRAFT_AC126013g5v1 [Medicago truncatula] (GB:ABE84236.1) -0.365182365980162 -2.99778692651959 0.0122635634678329 1 2.62137783758607 9.48481963903051 -0.365182365980162 0.150019604521670
AT1G22410_at 9.00738251073273 9.21531841539823 9.27766073279597 9.39032342211197 8.29391225532112 8.3263329080893 9.21507597469736 9.43906166295996 9.70958170800757 9.52409838186198 9.48039487872505 9.82539179362306 9.21619217302926 9.43674059384653 9.7409269881383 9.21314712098842 9.14650694184803 9.59393514379254 9.52740745800464 0.0981475760733274 0.0966706737776427 0.098222782133508 0.105963380747549 0.104906138650779 0.106851594332221 0.0986326406785369 0.107333064817668 0.112675246446036 0.0966706737776427 0.100077576092129 0.0998875590898865 0.0966706737776427 0.102301115490964 0.103432446371013 0.101201686071466 0.107290453198391 0.105491751045211 0.0998996142220093 1 1|0 +|/ 7913666 7914668 7914372.3 7912037 7914992 + gene protein_coding_gene FALSE TRUE AT1G22410.1 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G33510.1); similar to DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G39980.1); similar to putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica] (GB:ABA54865.1); similar to plastidic 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2 [Petroselinum crispum] (GB:AAB69320.1); similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] (GB:CAA75092.1); contains InterPro domain DAHP synthetase, class II; (InterPro:IPR002480); contains InterPro domain Calycin-like; (InterPro:IPR011038) -0.263763519871654 -2.99697748459681 0.0122812301706535 1 2.6201078270071 18.5424753037001 -0.263763519871654 0.0566475639549975
AT2G06850_at 9.1529044773827 9.79195739135509 6.64158279589199 7.35004217365532 9.16202145367515 9.09338175334204 9.22500713272692 10.0747449091043 10.6499290990795 10.0710983674356 11.8767209596993 11.4839167577294 10.4550524368356 11.1775993614210 11.3898091667143 10.4645026104517 9.34885809533473 11.4593677492684 10.4711327757323 0.128067414059365 0.124167505322464 0.176011362675673 0.160945430974829 0.124195806824906 0.137209100944436 0.125175461404043 0.124722541389745 0.13751801875676 0.128783576276219 0.128509229646102 0.127407054598072 0.127294573207661 0.125269854585301 0.129392529095499 0.127578290187975 0.134054909159639 0.127350174805576 0.12688676687933 2 2 + 2765138 2765443 2765300.273 2763523 2765717 + gene protein_coding_gene FALSE TRUE AT2G06850.1 EXGT-A1 (ENDO-XYLOGLUCAN TRANSFERASE); hydrolase, acting on glycosyl bonds endoxyloglucan transferase (EXGT-A1) gene Identical to Xyloglucan endotransglucosylase/hydrolase protein 4 precursor (EC 2.4.1.207) (At-XTH4) (XTH-4) (XTH4) [Arabidopsis Thaliana] (GB:Q39099;GB:Q94F33); similar to EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G13870.1); similar to Xyloglucan endotransglucosylase/hydrolase precursor (BobXET16A) (GB:Q6YDN9); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.469902394367575 -2.99667114929792 0.0122879228676161 1 2.61962718681431 19.4886378306905 -0.469902394367575 0.221419977429140
AT2G07050_at 9.12715736319081 9.22869801693005 8.8945966213527 8.89381961350857 9.06777883931065 8.96985387583288 9.63067783614268 9.35988103220838 9.75995346732578 9.50949448021336 9.66599679296962 9.571811087837 9.32997315025164 9.49449246151846 9.56922218312553 9.37324228343486 9.33742686991743 9.48496514329717 9.59173166634684 0.113392000099354 0.106043408350109 0.113475326149718 0.111825872453146 0.107121500816144 0.122850377017156 0.106269910394472 0.107385264329979 0.110124030922415 0.105917096540270 0.112411519704248 0.108748523365823 0.110190091715075 0.112623884346386 0.110889021320843 0.110463284068436 0.1057491159405 0.116558380971341 0.110802511607328 2 2|0 +|/ 2929295 2930244 2929763.3 2924444 2930669 + gene protein_coding_gene FALSE TRUE AT2G07050.1 CAS1 (CYCLOARTENOL SYNTHASE 1) Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol. Identical to Cycloartenol synthase (EC 5.4.99.8) (2,3-epoxysqualene--cycloartenol cyclase) (CAS1) [Arabidopsis Thaliana] (GB:P38605;GB:P92967); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78950.1); similar to LAS1 (Lanosterol synthase 1), catalytic/ lyase [Arabidopsis thaliana] (TAIR:AT3G45130.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to cycloartenol synthase [Glycyrrhiza glabra] (GB:BAA76902.1); similar to cycloartenol synthase [Lotus japonicus] (GB:BAE53431.1); similar to cycloartenol synthase [Pisum sativum] (GB:BAA23533.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) -0.261046641350738 -2.99589090016887 0.0123049860647563 1 2.61840297187412 18.6959501253959 -0.261046641350738 0.0528401709894734
AT4G09820_at 1.43185269393589 1.15686345378289 1.74818151082342 1.91629185505331 1.31373206681857 1.34255007151157 1.66469201934102 1.37860693581431 1.30300414347882 1.54315536937372 2.09139998509562 1.8762651932845 1.70775838466056 1.91053367016081 1.76741855778666 1.74435866759731 2.01974608619713 1.39181241959234 1.44490488494298 0.206264311151084 0.204611829041401 0.201094238122058 0.202650017319863 0.210275582727077 0.212120830795104 0.208570310266937 0.203655567496542 0.204508182700842 0.202614444117459 0.199164991146934 0.200905441571162 0.20154034888843 0.207466412706422 0.201694009673205 0.206524934576474 0.213532745838934 0.201537378434086 0.203392849797790 4 4 + 6185676 6186215 6185915.182 6182020 6186490 + gene protein_coding_gene FALSE TRUE AT4G09820.1 TT8 (TRANSPARENT TESTA 8); DNA binding / transcription factor TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. TRANSPARENT TESTA8 Identical to Protein TRANSPARENT TESTA 8 (Basic helix-loop-helix protein 42) (bHLH 42) (AtbHLH042) (BHLH42) [Arabidopsis Thaliana] (GB:Q9FT81;GB:Q9SZ97); similar to EGL3 (ENHANCER OF GLABRA3), DNA binding [Arabidopsis thaliana] (TAIR:AT1G63650.2); similar to anthocyanin 1 [Petunia x hybrida] (GB:AAG25927.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.277745960807441 2.99155160353999 0.0124003184046672 1 2.61159449803589 3.11610453579114 0.277745960807441 0.0747458577474049
AT4G02920_at 11.1522760460211 11.2829490450947 11.3188178165885 11.1726392422320 11.6517643276301 11.2730712319236 12.0664208351997 11.8973994206054 11.8494411698394 11.8992058780486 11.6789769789016 11.5217711261452 11.4891054672728 11.5089509475739 11.2276479754958 11.6957118796353 11.5306662196755 11.6213456256195 11.8087745320119 0.085077591738577 0.084718777816214 0.0892693715787564 0.0875354326651131 0.0854959428433865 0.0900906403869515 0.0852057679249523 0.0848004633092506 0.090978227891582 0.0866536915882186 0.086649452575928 0.084718777816214 0.0873484768288918 0.0911523448686569 0.0900909769951031 0.084718777816214 0.088469026410476 0.0882296572440082 0.0873934770335435 4 0|4 /|+ 1294170 1294623 1294370.5 1292523 1294861 + gene protein_coding_gene FALSE TRUE AT4G02920.1|AT4G02920.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03340.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE86673.1) -0.281945007281682 -2.99153042845018 0.0124007854319607 1 2.61156127336909 23.1702901894152 -0.281945007281682 0.0793829316505094
AT3G24670_at 3.71614246090299 3.39808676397348 2.92417227305107 2.52584957107171 2.79629999818742 3.35349079358638 3.03242242036722 3.11362950863933 3.37931295963358 3.07110966323039 2.84350735865082 3.02069782655850 2.95616921972124 2.90879740118622 2.65203197260207 2.92174370858079 3.31409957863424 2.92180991136405 3.17052570437229 0.187812248085533 0.192962174250794 0.198234546665261 0.196426026120618 0.189769518622779 0.193018231862619 0.187812248085533 0.197698773841953 0.197237508357339 0.1968785858928 0.193215069961123 0.190248335278385 0.191119376945998 0.196220865964801 0.192495607745186 0.191823295187308 0.187812248085533 0.207674958667689 0.19129196614019 3 3 - 9006213 9007076 9006421.364 9005946 9008808 - gene protein_coding_gene FALSE TRUE AT3G24670.1 pectate lyase family protein Identical to Probable pectate lyase 10 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9LJ42;GB:Q8GXJ2); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.339871391539896 -2.99043093398597 0.0124250597076049 1 2.60983611237189 6.18218167267628 -0.339871391539896 0.131439155478071
AT3G17280_at 1.88949441455775 2.04471293578659 2.66561317065356 2.08192626866721 2.48604170865452 2.59665477291813 1.76367828390444 1.52060757828510 1.656832251307 1.82382418526385 1.82504728171037 1.72991562174394 1.04612677724285 1.59624168956559 1.79256403788716 1.51259316155637 2.22061569939379 2.24482914006067 1.8033228477561 0.198409867765025 0.200517008079827 0.197924557912956 0.201605590037998 0.195764551186774 0.194213652576808 0.194313132913383 0.196750989166296 0.200514259143615 0.199751578554738 0.198969267409873 0.198685887249751 0.212599861868593 0.197003890860693 0.199564080822829 0.197353431214397 0.201828388261975 0.200321188810212 0.211991500687611 3 3 - 5903519 5903993 5903772.5 5903459 5904619 - gene protein_coding_gene FALSE TRUE AT3G17280.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17540.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.318800462562998 2.99014546940596 0.0124313699262754 1 2.60938820285445 3.88475019380545 0.318800462562998 0.114281847063293
AT1G49490_at 1.14254539538746 1.45404482114852 1.42523916565499 0.883902873092634 1.07047358015025 1.07398130048448 1.55742722660434 1.46612353912841 2.41944485717618 2.30781589655823 1.98209904535580 1.87667922671694 2.09879836789566 2.10376448249444 1.47422820826941 2.27995086043177 1.75755999286955 2.46016942376692 2.28777523978350 0.205427949597717 0.210270499199072 0.209381642022152 0.213492324180803 0.208309556264041 0.204754486985686 0.206536059366422 0.207996104594238 0.214171047229572 0.206962811306636 0.208581079534014 0.210203661031140 0.203099292444784 0.203074047848229 0.224963466210507 0.214182434391131 0.208717183052429 0.203684946370249 0.203074047848229 1 1 - 18321271 18321764 18321497 18321231 18323774 - gene protein_coding_gene FALSE TRUE AT1G49490.1 leucine-rich repeat family protein / extensin family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); similar to extensin-like protein [Zea mays] (GB:AAD55980.2); similar to extensin-like protein [Lycopersicon esculentum] (GB:AAD55979.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.312912572959586 -2.98997908707818 0.0124350493111992 1 2.60912713960905 3.43046800378024 -0.312912572959586 0.109233762683612
AT1G04070_at 3.57949858884587 3.59900189460841 3.63613123586615 3.57000820838181 3.76381556135943 3.79765305943996 3.21944882544489 3.3303250151413 2.86409514795543 2.80913548704240 3.11040737782892 3.23405729971498 3.11574691018492 3.08651439515065 3.10690786430056 3.09781853120301 2.91981035581425 3.2403119914642 2.97295713114452 0.211372504044539 0.212714943340484 0.206414261625899 0.205795535967779 0.212378897303108 0.220133753188469 0.205673224647361 0.208446390746366 0.209256463283747 0.210732490902255 0.210497791805247 0.209239929925246 0.210264786458951 0.213320473559874 0.206267352348831 0.205673224647361 0.211740985105058 0.20741917339588 0.207263800559438 1 1 - 1050855 1051076 1050967.091 1050552 1051185 - gene protein_coding_gene FALSE TRUE AT1G04070.1 TOM22-I (translocase of the outer mitochondrial membrane 22-I) Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion. Identical to Mitochondrial import receptor subunit TOM22 homolog 1 (Translocase of outer membrane 22 kDa subunit homolog 1) (Mitochondrial import receptor subunit TOM9-1) (Translocase of outer membrane 9 kDa subunit TOM9-1) (TOM22-1) [Arabidopsis Thaliana] (GB:O64497); similar to TOM22-V (TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V) [Arabidopsis thaliana] (TAIR:AT5G43970.1); similar to unknown [Solanum tuberosum] (GB:ABB55375.1) 0.245858843622644 2.98887788017976 0.0124594291223997 1 2.60739927871975 6.55999001334688 0.245858843622644 0.0233406668144073
AT4G31080_at 8.13126997220331 8.04781987447313 8.20891869612647 8.21948666341961 8.63641932091193 8.61213568588492 7.92837228667221 7.83855365388892 7.19442428966027 6.90723292218696 6.85260115675238 6.82004753543281 7.21685767134145 6.98356488439021 7.13277949875174 6.99569094479812 7.3065269855378 7.09530163129709 6.87582648135538 0.165730780777173 0.168747768675932 0.168823572019424 0.164100045127975 0.168367757319421 0.169099238478834 0.168711224726763 0.169016667123543 0.172163719878379 0.171066567110776 0.162359031546171 0.164630144334174 0.166398237410277 0.17179451146731 0.165831965896804 0.162346657283197 0.170916335364834 0.165382201839907 0.164729213512025 4 4 + 15121201 15122945 15122065.045 15120894 15123492 + gene protein_coding_gene FALSE TRUE AT4G31080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24330.1); similar to Os02g0631000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047497.1); similar to Os04g0672900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054229.1); similar to H0322F07.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67769.1); contains domain FAMILY NOT NAMED (PTHR22166); contains domain SUBFAMILY NOT NAMED (PTHR22166:SF1) 0.245331434456582 2.98844911446033 0.0124689346632041 1 2.60672651669653 15.2243299456668 0.245331434456582 0.0217062448048214
AT1G67340_at 5.28906266690443 6.2573234067355 6.68811439848133 6.37072734270322 7.02669183526924 6.32042967795067 6.38920124972153 6.29994734999233 4.01744020818201 4.53062180015847 4.24117319020579 5.17216283163864 4.85347038442711 5.27315350324136 5.0438173061344 5.41197176573296 5.62416372149587 4.28565026294936 5.29173988448189 0.275988661720371 0.269317662624219 0.266239946982451 0.266239946982451 0.266239946982451 0.281970793419140 0.266239946982451 0.270533371850967 0.276005806130077 0.266239946982451 0.268474435750327 0.268729927106538 0.266239946982451 0.268841140168487 0.286862906384291 0.266239946982451 0.283381074647511 0.277781457764804 0.273822844924648 1 1 + 25234706 25235175 25234938.364 25233928 25235503 + gene protein_coding_gene FALSE TRUE AT1G67340.1 zinc finger (MYND type) family protein / F-box family protein similar to zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT5G50450.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88375.1); similar to Os01g0921800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045230.1); similar to Os04g0385600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052618.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.458767609191699 2.98786868263719 0.0124818142147036 1 2.60581577831968 11.1309185751376 0.458767609191699 0.215106034989474
AT2G37430_at 1.45308282562685 1.43746545272230 1.71832158860173 1.77783551798372 1.44746205408998 1.47208786653879 1.17962247530884 1.3402212797676 1.54241169162386 1.39335145198462 2.06408702386895 1.59771982145946 1.56915225899423 1.73089624349983 1.46653036742557 1.40206036065377 1.89600709268464 2.08011540626724 1.50684793100196 0.183909404789757 0.184051602465113 0.186917015872067 0.18208309639502 0.191408608953202 0.180195076993367 0.184416636941739 0.185269208675218 0.199603560027049 0.180195076993367 0.184456450209163 0.181891692979239 0.18482089755906 0.181072863150011 0.186978174892109 0.180195076993367 0.196487248049023 0.195554244051259 0.180195076993367 2 2 + 15713597 15713923 15713763.091 15713440 15714303 + gene protein_coding_gene FALSE TRUE AT2G37430.1 zinc finger (C2H2 type) family protein (ZAT11) similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G53600.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93962.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.248139731050193 2.98759842225897 0.0124878157579708 1 2.60539171994677 3.08160809761007 0.248139731050193 0.0300658345660849
AT3G33080_at 0.68524226659043 1.31190982124017 1.24709049071830 1.22747451715395 0.500312743488031 0.594996040766211 1.36829633396770 1.40334611631351 0.90159073791308 1.32621079464290 1.08160239896843 1.01540280715406 1.5321684091387 0.373714433085598 0.0974576415602296 0.830039791916206 0.711770584502224 0.515938077056394 1.06171294914013 0.251846993423105 0.257575308472631 0.266859019972760 0.289598832186071 0.259855548032362 0.262881774944545 0.257931005728439 0.251846993423105 0.263545792171023 0.260255320332308 0.263659987461496 0.254317516997261 0.26605385874561 0.256009354081354 0.261100002844364 0.255842532631227 0.251846993423105 0.260665078373954 0.264375312071648 3 3 - 13827639 13827749 13827694 13827628 13828157 - gene protein_coding_gene FALSE TRUE AT3G33080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30650.1) -0.313236622902817 -2.98578403823597 0.0125281822666934 1 2.60254480507323 1.97546683885717 -0.313236622902817 0.109898626129977
AT4G20360_at 12.6194584733479 12.8141425968935 12.4743442494515 12.5328964003495 12.4202201243473 12.4479316625497 13.1160330436017 13.3499621261904 13.2860107490526 13.5813995461486 13.4046819579758 13.4789529506125 13.4456522011246 13.3708408206405 13.5752472200540 13.4871165478065 13.1085227614136 13.4251993805189 13.4155541432305 0.0585997388851169 0.0565068381494785 0.0565068381494785 0.0585206112119013 0.0576152908212717 0.0626728617612671 0.0576699385101995 0.0565847083169203 0.0602847326493273 0.0565068381494785 0.0577106141373462 0.0577720284027595 0.0566438979756699 0.057659243160925 0.058335732425255 0.0565068381494785 0.0653449484004287 0.0591855853445413 0.0565068381494785 4 4 + 10990899 10991451 10991159.091 10989963 10991720 + gene protein_coding_gene FALSE TRUE AT4G20360.1 AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b); translation elongation factor Identical to Elongation factor Tu, chloroplast precursor (EF-Tu) (TUFA) [Arabidopsis Thaliana] (GB:P17745); similar to elongation factor Tu, putative / EF-Tu, putative [Arabidopsis thaliana] (TAIR:AT4G02930.1); similar to chloroplast translational elongation factor Tu [Pelargonium graveolens] (GB:AAK08141.1); similar to Elongation factor Tu, chloroplast precursor (EF-Tu) (GB:Q43467); similar to Elongation factor Tu, chloroplast precursor (EF-Tu) (GB:P46280); contains InterPro domain Translation elongation factor Tu; (InterPro:IPR004541); contains InterPro domain Elongation factor Tu, C-terminal; (InterPro:IPR004160); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Translation elongation factor, GTP-binding; (InterPro:IPR013004); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.260839516813072 -2.98575341807436 0.0125288646324431 1 2.60249675937771 26.1417143560059 -0.260839516813072 0.0538478175990046
AT4G35260_at 9.88880068105502 9.91819892581323 10.2138498756594 10.1992822316670 10.0310757863323 9.67335938529525 9.9793628015245 9.84148411917227 8.97655116952116 9.0259190169478 9.4013256538324 9.34166494131435 9.261371892709 9.37862335089982 9.34644629021861 9.36881161993818 9.33658222213366 9.15544124637214 8.71443942514828 0.0841161907455767 0.0823319592900289 0.0840181810461604 0.0852397679198004 0.0847927439736144 0.085142719928304 0.0886797513006302 0.0837189678499604 0.0929142143142538 0.0889616514459223 0.084319126782521 0.0836256986910338 0.0864887381427056 0.0893426371502022 0.0872506711680875 0.0823319592900289 0.094730314683020 0.0947063258784968 0.0886591814797998 4 4|0 -|/ 16774510 16775582 16775055.4 16774200 16776330 - gene protein_coding_gene FALSE TRUE AT4G35260.1 IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+) NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 1) (NAD(+)-specific ICDH 1) (IDH-I) (IDH1) [Arabidopsis Thaliana] (GB:Q8LFC0;GB:O65501;GB:P94015;GB:Q7DM90); similar to IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT2G17130.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.270288526409372 2.98557045876244 0.0125329426338477 1 2.60220968018160 19.0828866955064 0.270288526409372 0.0665862598075542
AT4G23496_at 2.05631008528311 1.40541793432079 1.82861770717449 1.85203949574796 1.71796426631891 1.91225220036506 1.48663988091387 1.69372670012577 2.00577425152641 2.07132104310037 2.34869717608094 2.10764276859542 2.23049181070750 2.11978269437112 2.30000754774907 2.38737874581115 2.73446639701510 2.38744756535288 1.43319908917442 0.202292383229812 0.196039720954508 0.205642926732202 0.203518918745969 0.199613423050340 0.206849744918526 0.200990835631195 0.204407546468492 0.196723575149073 0.202409251020981 0.196039720954508 0.197508471114284 0.196559613392700 0.202371592716482 0.196039720954508 0.197788144875836 0.199452189136221 0.196039720954508 0.204390250942814 4 4|0 -|/ 12257937 12258283 12258150.1 12257686 12258421 - gene protein_coding_gene FALSE TRUE AT4G23496.1 SP1L5 (SPIRAL1-LIKE5) Belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. similar to SP1L2 [Arabidopsis thaliana] (TAIR:AT1G69230.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44613.1) 0.328709655425360 2.98531511718192 0.0125386362075979 1 2.6018090264909 3.82599810018664 0.328709655425360 0.122959195999807
AT1G15710_at 4.35507796212696 5.42290881796048 4.51931068697292 4.34229339017008 4.20091755152125 4.40459283005104 6.17584204534217 6.36747239453923 4.01496518905914 5.03228390866413 4.78258858340205 5.41112575190746 4.93403456981292 5.03599216998191 5.29750018152176 4.85483662408627 4.12991634257604 4.90434504105219 4.62140750992895 0.237407262589836 0.236855926912895 0.234962354150088 0.231887793390582 0.234813059044507 0.236855932142670 0.249494521084489 0.240609127618359 0.238487433505699 0.234748477085816 0.233112141337344 0.244659831276745 0.233038343159069 0.248252856137385 0.231887793390582 0.231887793390582 0.243156848138933 0.232129743030922 0.239960148044799 1 1 + 5404996 5405463 5405201.636 5404353 5405681 + gene protein_coding_gene FALSE TRUE AT1G15710.1 prephenate dehydrogenase family protein Identical to Arogenate dehydrogenase 2, chloroplast precursor (EC 1.3.1.78) (TyrAAT2) (TYRAAT2) [Arabidopsis Thaliana] (GB:Q9LMR3;GB:Q8L7Z4); similar to arogenate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G34930.1); similar to Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent [Medicago truncatula] (GB:ABE87267.1); contains InterPro domain NADP oxidoreductase, coenzyme F420-dependent; (InterPro:IPR004455); contains InterPro domain Arogenate/prephenate dehydrogenase, plant; (InterPro:IPR012070) -0.42548657574411 -2.9844683757365 0.0125575353938651 1 2.6004804106662 9.7110575984655 -0.42548657574411 0.193465800994684
AT1G29160_at 3.0770803759783 3.24722192328758 3.19800034736629 3.2554745217362 2.76872322258827 2.98332587029818 1.88238852004415 2.11947454724139 2.19564785322968 2.28494938744731 2.31100566295463 2.78622189084773 1.97861447005430 2.64919224710742 2.30670899636713 2.27937636536323 2.14974656178216 2.55500143635774 2.45393962868007 0.223129037792929 0.225178043650261 0.219794386110508 0.219261823141182 0.221585626511934 0.227329358602177 0.217644899105294 0.220678515387387 0.223867236060020 0.217644899105294 0.219992907613396 0.229882943783683 0.223499193780943 0.220164756798823 0.219983229973899 0.222478152649004 0.227558907068492 0.219852635607879 0.223055630000685 1 1 - 10183784 10184246 10184005.818 10183783 10184310 - gene protein_coding_gene FALSE TRUE AT1G29160.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF1.5 (AtDOF1.5) (DOF1.5) [Arabidopsis Thaliana] (GB:P68350); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G34140.1); similar to Dof3 [Glycine max] (GB:ABI16004.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.267655406463994 2.98372788900254 0.0125740865055181 1 2.59931851456515 5.16070903788753 0.267655406463994 0.0634701442418384
AT2G18060_at 1.91999817420489 1.98999080328127 1.83407949042442 2.25792891813637 1.32323743662185 1.24190559498497 1.70454160850503 2.06623429215614 2.15775780420426 2.56642889399478 2.25735702350976 2.18811433038021 1.98640086733623 1.67591401659957 2.39042708948455 1.66089250624073 1.91287305083271 2.38401199020984 2.47906846454510 0.188323875423632 0.188110831620946 0.197011792822512 0.188741645918681 0.185927302647969 0.194989637226707 0.191542454578891 0.185876969287502 0.185356348810764 0.187936369457303 0.187366070488159 0.190086572078676 0.196746365979376 0.183978481289985 0.183978481289985 0.186445048536617 0.186505447966099 0.185664236211496 0.189507393686095 2 2 - 7855524 7856030 7855805 7855481 7857385 - gene protein_coding_gene FALSE TRUE AT2G18060.1 VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1); transcription factor Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. similar to ANAC076/VND2 (Arabidopsis NAC domain containing protein 76, VASCULAR-RELATED NAC-DOMAIN 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G36160.1); similar to NAC-domain protein Ze567 [Zinnia elegans] (GB:BAE20090.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.299994777209388 -2.9834569443846 0.0125801480589534 1 2.59889337510175 4.02128149657549 -0.299994777209388 0.0981974701962057
AT3G59030_at 1.91895742074682 1.64437929958782 2.27887274243368 2.3937664345999 2.08103892461067 2.35027211548312 2.03377181690206 2.22924120208106 1.61767878932772 2.07934446412473 1.98183711501622 2.42599546702749 1.36521531766075 2.31977045583969 2.22088888167878 2.22548442685268 2.2280926023278 2.23293817341682 1.96099175513825 0.221179458613532 0.213313381740908 0.216106901783481 0.224070194375457 0.214983486110815 0.230761624172641 0.216066454500898 0.228723192078224 0.215689808501031 0.227149474071142 0.214682453190689 0.216691017955027 0.214044179331912 0.214963009208584 0.214331974909669 0.216473668580518 0.215451038446713 0.217301933032574 0.215585326361273 3 0|3 /|+ 21831529 21831915 21831679 21830048 21832417 + gene protein_coding_gene FALSE TRUE AT3G59030.1 TT12 (TRANSPARENT TESTA 12); antiporter/ transporter encodes a carrier-type transporter with 12 transmembrane domains. Recessive mutation has strong reduction of proanthocyanidin deposition in vacuoles and has reduced dormancy. Expressed in the endothelium of ovules and developing seeds. Identical to TRANSPARENT TESTA 12 protein (TT12) [Arabidopsis Thaliana] (GB:Q9LYT3); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G21690.1); similar to Os12g0615700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067276.1); similar to TonB box, N-terminal [Medicago truncatula] (GB:ABE93834.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.279211460783185 2.98317712873642 0.0125864111641616 1 2.59845431561893 4.12180389847619 0.279211460783185 0.0772546134068889
AT3G12685_at 5.3582889563714 5.35724439627305 5.05624386506227 4.81748507028595 5.33935912345995 5.17936952083292 5.86974720335598 6.26415410294374 5.38442491059867 5.20461968551404 5.20126113412159 5.68334826443512 5.12673157046306 5.6592628957758 5.97397783325254 5.72092382332319 4.57712422607173 5.35820261003585 5.5213422567886 0.223064234702686 0.206749599480677 0.225609960575977 0.233045025662845 0.205010688967262 0.225822310817701 0.209741144692860 0.220109357225204 0.220017752241160 0.206469260744679 0.207938596473239 0.205491319001933 0.205259055661687 0.210888494207091 0.211108592238102 0.208122393504825 0.241934889705054 0.211594952239419 0.210486856129037 3 3 - 4029259 4030193 4029851.636 4029190 4030362 - gene protein_coding_gene FALSE TRUE AT3G12685.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24350.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABE86902.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) -0.285884588054004 -2.98249351626942 0.0126017256552079 1 2.59738165545534 10.7966030276491 -0.285884588054004 0.084453571112301
AT1G19890_at 1.77835957616651 1.88291075937791 1.86706571675887 1.73752680743012 1.20342484686193 1.85552856527753 1.69608604383055 1.77213437001184 2.19962820281595 1.89480125679847 1.67141893481295 1.89897048696609 1.54752150273377 1.76671203842646 1.63945580470592 1.71667917173440 1.32640348266978 1.86591935593796 2.52135438560302 0.168995301082679 0.173533639535785 0.167321619630905 0.17496184239253 0.168641679535597 0.168084825077703 0.167321619630905 0.172992807100476 0.176842144940987 0.172874173182132 0.170438748921947 0.172218444291492 0.167321619630905 0.167321619630905 0.17064661628478 0.169008842106931 0.173538185132120 0.171745965389730 0.170020872655141 1 1|0 +|/ 6905223 6905758 6905541.3 6905025 6906009 + gene protein_coding_gene FALSE TRUE AT1G19890.1 ATMGH3/MGH3 (MALE-GAMETE-SPECIFIC HISTONE H3); DNA binding histone 3.3, male-gamete-specific expression Identical to Histone H3-like 2 (Male gamete-specific histone H3) (MGH3) [Arabidopsis Thaliana] (GB:Q9FXI7); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to histone H3 [Lilium lon (GB:BAE20249.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.32130619387766 -2.98115255368849 0.0126318208428970 1 2.59527753546261 3.66632777520819 -0.32130619387766 0.117209744487839
AT4G16240_at 7.68322091513293 7.2847132523997 7.96352145590982 7.47309218466069 7.84519878929415 7.80093175725222 7.23877001667576 7.33067731701764 8.4120479399099 8.33471964916784 8.49326637671964 8.2401295623989 8.26084508796427 8.83582059357165 8.51118658705826 8.06380475574855 8.44047785355497 8.72898334382196 7.87029735878494 0.117506027695985 0.117216304657216 0.121374366597896 0.130148556181272 0.121607488339595 0.124054256846925 0.125280364750461 0.121300913944729 0.117038950498045 0.122489183652146 0.119742719629448 0.117063502189966 0.117929817778086 0.120335057786792 0.118675388224224 0.120889080236727 0.117105897913602 0.124142670039108 0.118500748919313 4 4 - 9192357 9192436 9192400.364 9192351 9192583 - gene protein_coding_gene FALSE TRUE AT4G16240.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G46730.1); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G05440.7); similar to glycin-rich protein [Vigna unguiculata] (GB:CAA61200.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) 0.313733312811631 2.98092467782717 0.0126369422465870 1 2.59491997176177 15.9037670040724 0.313733312811631 0.110773336487164
AT3G07100_at 8.13756614837272 8.26323085069275 8.10098673839374 8.423607177946 8.21618399454807 7.9250165646365 7.79661907650336 7.91686032296666 7.63379754760519 7.34893163403519 7.88104115051584 7.8933025633789 8.07778355345555 8.06537978699586 7.7714399158008 8.25121500468305 8.27959153553142 7.28840759296602 7.55188207483329 0.180737728810449 0.183890297206800 0.183205496822388 0.181667769409443 0.179088143484446 0.197758117728928 0.179088143484446 0.190690715779160 0.198362409505153 0.185613128515161 0.183255902466215 0.179088143484446 0.179088143484446 0.190716785017423 0.187459489394046 0.179088143484446 0.186998849367067 0.196859506951967 0.188688250841782 3 3|0 -|/ 2245713 2246450 2246185.4 2245170 2250700 - gene protein_coding_gene FALSE TRUE AT3G07100.1 protein transport protein Sec24, putative Identical to Protein transport protein Sec24-like At3g07100 [Arabidopsis Thaliana] (GB:Q9SFU0;GB:Q56WS8;GB:Q8L7A7); similar to CEF (CLONE EIGHTY-FOUR), transporter [Arabidopsis thaliana] (TAIR:AT3G44340.1); similar to Vesicle coat complex COPII, subunit SEC24/subunit SFB2 (ISS) [Ostreococcus tauri] (GB:CAL57339.1); similar to Os04g0129500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052091.1); similar to OSIGBa0131J24.5 [Oryza sativa (indica cultivar-group)] (GB:CAH65927.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.282431285835957 2.98067839342729 0.0126424797253009 1 2.59453352259468 15.8225374709610 0.282431285835957 0.0810058502052735
AT1G72030_at 9.3491473488185 9.43790173293758 9.59694009260294 9.55239063639034 9.40576650656457 9.19622968985913 10.1128680756279 10.1753736853564 9.8408404305269 10.1207322507242 9.66912174191079 9.83080246269645 9.8491941826045 9.828295588644 9.6967145609029 10.3409372858038 10.1254834577091 9.77340574833435 10.2304434612802 0.102100287517816 0.10373954073639 0.104625898162547 0.106330303594869 0.105662938833309 0.110927790357055 0.107287086259769 0.100755677559728 0.11328608661477 0.111083558125125 0.106800667862894 0.101208532290208 0.106685114463365 0.10622493155819 0.107706615847209 0.100755677559728 0.110845300538268 0.107308044157439 0.10196240370722 1 1|0 +|/ 27114802 27115422 27115173.9 27114527 27115594 + gene protein_coding_gene FALSE TRUE AT1G72030.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84763.1); similar to Os07g0264800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059331.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.252875990799439 -2.97995649250831 0.0126587250901211 1 2.59340077326488 19.5799521007294 -0.252875990799439 0.0415600146764863
AT1G80970_at 4.03399131240077 3.6242255407333 3.58707281937486 3.97485742027496 3.56100892880093 3.48920021835864 3.95098841298921 3.81970531566701 4.18570619091860 4.28920416182934 4.02758467814641 3.76078990231613 4.12643921554966 3.71561713553131 4.31111998120491 3.7569185991095 3.9483138266695 3.46364590448787 4.39478084017087 0.205320441177683 0.206209503132166 0.212131591182532 0.220597927820791 0.219077087802083 0.225749671523864 0.219169654621357 0.205320441177683 0.207062085768352 0.215855326178355 0.209996627703318 0.220752050743841 0.206903863832005 0.211846664219894 0.209239647417963 0.214246283698289 0.209223265819475 0.208815779076182 0.223524769643915 1 1 + 30425164 30425668 30425412.7 30425042 30426878 + gene protein_coding_gene FALSE TRUE AT1G80970.1 XH domain-containing protein similar to XH domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G80990.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379) -0.302643103837292 -2.97962438345588 0.0126662057968578 1 2.59287965327478 7.84448160591655 -0.302643103837292 0.101007698872837
AT2G03310_at 10.0662599103995 10.1929226520845 10.3782143232816 10.4316183456369 10.9607327661281 10.6516876365064 10.5879819874691 10.4578896229389 9.71966471410079 10.0497843744342 10.1078233809874 9.65803507889445 10.238290831098 10.1062930280873 9.8868718766588 10.0820491460171 10.5452119625366 10.1175499640810 9.74695417359012 0.0940642666980126 0.0917126858500341 0.0940613357457707 0.0906683363307318 0.0920407543390107 0.0960031598565179 0.0944756708015951 0.095639462805717 0.0941992679665223 0.0993105145591535 0.0939457894850137 0.0984156576132085 0.0907251595311254 0.092564412805257 0.100457356660684 0.0906683363307318 0.0967038068949734 0.099538073690067 0.0990702767758184 2 2 - 1006723 1007014 1006865.091 1006253 1007180 - gene protein_coding_gene FALSE TRUE AT2G03310.1 unknown protein 0.266632147917637 2.97882242211471 0.0126842882182144 1 2.59162127476312 20.4316967785157 0.266632147917637 0.0627137196880068
AT3G56840_at 7.12808355533159 7.23814020234871 7.39842848890287 7.14781952599968 7.47896872483357 7.27433271263707 7.95390777499868 7.46589137121454 7.1566681161868 7.24163630862461 6.56252006882892 6.38055089933918 6.66917591261225 6.83758743226669 6.47026044011257 6.94171857748592 7.18335808615099 6.83214314731686 7.26997198592616 0.206405918840781 0.191554951540882 0.196890190941978 0.193653078772204 0.202483490341126 0.202630575595066 0.200102559082672 0.190850068606483 0.216716244630731 0.192760231949702 0.193535299159868 0.197609241944704 0.196333026533151 0.191529926792738 0.200282357060036 0.190850068606483 0.206023725950732 0.209279746755006 0.193626986130173 3 3 + 21056388 21057077 21056668.364 21055296 21057293 + gene protein_coding_gene FALSE TRUE AT3G56840.1 FAD-dependent oxidoreductase family protein similar to FAD-dependent glycerol-3-phosphate dehydrogenase; Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83736.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) -0.30485642297255 -2.97881013191562 0.0126845655366929 1 2.59160198986394 14.3644081065800 -0.30485642297255 0.103102422976055
AT1G15040_at 1.3734777306429 1.31767926926304 1.57045713261283 1.29434094461321 1.43213717312997 1.66910849654147 1.34854504844338 1.25920701516018 0.854223800856324 1.04028131712297 1.41581132735471 1.54579330782082 1.46656436040888 0.930695904339138 1.52965320198767 1.18263424592837 1.76782742371110 1.49505578979265 1.24325699872502 0.218405999722397 0.213134555336432 0.222817664782972 0.222863171662428 0.217282589658461 0.214227345924404 0.213014980524033 0.215013282708376 0.22829733434065 0.232792499820770 0.215008559725145 0.22014521724246 0.227403771657961 0.213014980524033 0.221776716664778 0.216980596861306 0.218276389232732 0.220120995659163 0.216719803751358 1 1 - 5180043 5180667 5180345.727 5179882 5181384 - gene protein_coding_gene FALSE TRUE AT1G15040.1|AT1G15040.2 glutamine amidotransferase-related similar to catalytic [Arabidopsis thaliana] (TAIR:AT5G38200.1); similar to Os01g0138800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041973.1); similar to peptidase C26 [Chloroflexus aggregans DSM 9485] (GB:ZP_01516129.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702)|similar to catalytic [Arabidopsis thaliana] (TAIR:AT1G66860.1); similar to Os01g0138800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041973.1); similar to peptidase C26 [Chloroflexus aggregans DSM 9485] (GB:ZP_01516129.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.268808705223403 2.9783554281095 0.0126948298563526 1 2.59088850070392 2.63945667666888 0.268808705223403 0.0655533053530008
AT4G12480_at 6.91177552301191 7.52718923429975 2.59916869523114 3.35672551092523 6.02980708825727 4.59924547315628 0.623583959218535 0.461655174491797 0.742029705269278 4.69590790286902 0.264121960673332 0.498189853242144 0.389527189820875 0.611135950970697 0.853127168507044 0.613690794863892 1.36601560264642 0.905122297268374 0.988641300103954 0.335176998703558 0.330377608701779 0.317492273444866 0.311716858404448 0.324777954062821 0.337297470497367 0.309965315899144 0.309965315899144 0.312579081467399 0.336676582165813 0.313973108084076 0.312215216073239 0.312785827676885 0.309965315899144 0.311633812347655 0.309965315899144 0.311906975806548 0.312494029111627 0.317104731045484 4 4 - 7406380 7406814 7406651.545 7406102 7406934 - gene protein_coding_gene FALSE TRUE AT4G12480.1 pEARLI 1; lipid binding a putative lipid transfer protein, vernalization-responsive and cold-induced similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12500.1); similar to arachidonic acid-induced DEA1 [Capsicum chinense] (GB:CAI51313.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.594695449014002 -2.97822431931808 0.0126977910123143 1 2.59068277383283 5.42854849315558 -0.594695449014002 0.301003396022441
AT3G02940_at 0.724500938757363 0.671874571615466 0.467510305663752 0.328301001892017 0.477566530254577 0.605141405868908 0.850166451374505 0.576567460137765 1.39190892356642 1.19864440541564 1.37604891404563 0.826286604198349 0.67556534409372 0.616192713750889 1.14312194067236 0.727550971047045 1.40578405713404 1.05565090298353 1.21446430356753 0.226992977761268 0.226257663492604 0.222759190589197 0.224470167043562 0.226261252133538 0.226749981215128 0.238952982469336 0.223864828038105 0.230859086734589 0.225271587448943 0.231804257632064 0.224640749942336 0.220796345928684 0.221734526495620 0.227300103116126 0.22620219949356 0.230278395439175 0.223491682417669 0.224484848565014 3 3 + 663200 663810 663482.545 661880 664013 + gene protein_coding_gene FALSE TRUE AT3G02940.1 MYB107 (myb domain protein 107); DNA binding / transcription factor Encodes a putative transcription factor (MYB107). similar to AtMYB9 (myb domain protein 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G16770.2); similar to transcription factor MYB101 [Lotus japonicus] (GB:BAC75671.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.263105787205314 -2.97656612152678 0.0127353023056324 1 2.58808083684921 1.71101077911582 -0.263105787205314 0.0582453055867845
AT2G26890_at 7.98294095425384 7.9358565138569 8.08732820032308 7.98136499519632 7.93144228062104 8.12907982157524 7.50120606443952 7.68575761798496 7.65165055358947 7.83327244743137 8.03594847837587 8.12582117411758 8.06633153499354 8.06398190637344 7.82271844183105 8.14937345313878 8.14323541529263 7.90204410250674 7.85047392124758 0.137634106239865 0.138521381867283 0.133555893475488 0.136807151700377 0.145578293981846 0.139274130678346 0.142606267194928 0.148213427070123 0.149456590471764 0.135224476850194 0.137330909558438 0.137955156064378 0.140317563032574 0.146183204862232 0.138897497924451 0.138968799325908 0.149223087216703 0.143818744934139 0.138755347512481 2 2|0 -|/ 11469460 11470430 11469824.778 11469145 11480919 - gene protein_coding_gene FALSE TRUE AT2G26890.1 GRV2 (KATAMARI2); binding / heat shock protein binding GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation. similar to putative DnaJ domain containg protein, 3'-partial [Oryza sativa] (GB:AAL67579.1); similar to unknown protein [Oryza sativa] (GB:AAK00454.1); similar to DNAJ heat shock N-terminal domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66288.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.258039854683842 2.97580081783417 0.0127526524125759 1 2.58687996721523 15.8129457830738 0.258039854683842 0.050916028631732
AT1G49450_at 3.70848647508387 4.56259171502959 4.04656140193315 4.34062343874049 5.30578678427721 4.90874761671542 3.97830051916599 4.62096955111891 2.45432722272797 3.12328060110138 2.59970908062151 2.76982687385673 4.02843605065304 2.8524895737079 2.45764773757703 3.2438987106462 3.87337692590613 3.51859454262788 2.58784508364855 0.274069252622737 0.269363177113859 0.268015114434221 0.268423711346098 0.26496045464193 0.280922468935373 0.264234821554923 0.263929823368591 0.2697756523636 0.274110400701541 0.261726390488745 0.262763103405887 0.261724747292887 0.261822951223642 0.271208538112976 0.258446636107872 0.26564295975506 0.258446636107872 0.264866420900888 1 1 + 18310199 18310741 18310452.818 18309209 18311225 + gene protein_coding_gene FALSE TRUE AT1G49450.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G18950.1); similar to WD-40 repeat family protein [Musa acuminata] (GB:ABF70017.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.439511273220284 2.97458434366901 0.0127802799508437 1 2.58497114187093 7.37891597414584 0.439511273220284 0.203781094364558
AT1G05750_at 2.43679212845487 2.58928718767845 2.23068175235411 2.13635170313618 1.44170370235644 1.76362663121046 1.93652303369069 2.14062942180436 1.72199892736080 1.32853688801816 1.32652147084306 1.36207084142223 1.70894812432566 1.29509511302512 1.67724399314443 1.67062930584888 2.17146470909248 1.16866814770370 2.09129134672261 0.174645808135285 0.178484753091836 0.175747160069815 0.17426309002372 0.172706742843132 0.172706742843132 0.173671873656708 0.172761197807835 0.179317160360207 0.172706742843132 0.173959366035913 0.174716692527487 0.179672044674016 0.177829268110398 0.186108427696230 0.177685472738719 0.174495825529425 0.176986874105293 0.174974285927127 1 1 + 1722431 1722989 1722755.455 1721508 1724733 + gene protein_coding_gene FALSE TRUE AT1G05750.1 PDE247 (PIGMENT DEFECTIVE 247); binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32761.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.274539584917144 -2.97436779207364 0.0127852044041971 1 2.58463134015922 3.71521074535714 -0.274539584917144 0.0728982765005813
AT3G22680_at 4.66719113126957 4.78091065995448 3.74177363637410 3.97109703452999 4.09238211783895 3.85627601375113 4.10682129703418 4.77857705117588 4.32484344033138 3.94322773956208 3.96531232302055 3.82567365431821 4.07059693513541 3.71275427861396 4.55169576618776 3.9336885127915 4.47545100016448 4.09927203657656 3.98995333393419 0.20148420909718 0.198582171798448 0.20322558163992 0.207341278099530 0.201886481218527 0.198582171798448 0.198582171798448 0.202705206402310 0.206351534780422 0.198582171798448 0.198582171798448 0.198582171798448 0.199183524470272 0.201313249095926 0.198631916516843 0.198582171798448 0.204498604526448 0.198582171798448 0.207968395274204 3 3 + 8019831 8020343 8020106.545 8019715 8020515 + gene protein_coding_gene FALSE TRUE AT3G22680.1 Identical to Protein At3g22680 [Arabidopsis Thaliana] (GB:Q9LUJ3;GB:Q84MD0); similar to Os06g0630300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058122.1) -0.337347721079906 -2.97374781127352 0.0127993135359973 1 2.58365849682574 8.3320354850545 -0.337347721079906 0.130942270539540
AT4G14680_at 8.86573348164302 9.03716528466055 7.75077205983378 7.93883029115885 8.26998669086392 7.50149294436503 9.0800628803339 8.8578775097967 7.09072179672834 8.34064804783814 8.3202206406272 8.32172387597799 7.84005733648923 8.62583115059723 7.58967703400345 7.99989352172131 7.55877613022338 7.79670800948283 7.43891860409396 0.186906860749874 0.186687221768128 0.195453911078103 0.187580559034332 0.179737369078999 0.197755041615732 0.187585826697053 0.188847455382256 0.217611303522088 0.182274066417794 0.180861105518523 0.184455007700208 0.184963388504696 0.180531241561055 0.197172258497366 0.180726060938514 0.195156500045024 0.193493503484266 0.187099218349875 4 4 - 8413504 8414256 8413930.182 8413283 8415386 - gene protein_coding_gene FALSE TRUE AT4G14680.1 APS3 (ATP sulfurylase 2); sulfate adenylyltransferase (ATP) ATP sulfurylase similar to APS4 [Arabidopsis thaliana] (TAIR:AT5G43780.1); similar to APS1 (ATP sulfurylase 3) [Arabidopsis thaliana] (TAIR:AT3G22890.1); similar to APS2 (ATP SULFURYLASE PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G19920.1); similar to ATP sulfurylase [Brassica juncea] (GB:CAA11417.1); similar to ATP sulfurylase (GB:AAA92350.1); similar to ATP sulfurylase (GB:AAA21570.1); contains InterPro domain ATP-sulfurylase; (InterPro:IPR002650) -0.355878906524815 -2.97348718784354 0.0128052493190108 1 2.58324953889768 16.2277603654705 -0.355878906524815 0.145273565532696
AT1G61370_at 2.98626935720788 2.81556746184186 3.72865571023972 3.04822577722551 2.98558709499918 2.90310936931946 2.48916733875844 2.21104608260414 2.69129995580596 2.24183395910718 2.66599222669601 2.70574548698657 2.67341719664918 2.61030244948208 2.5086416366641 2.84608628043541 2.53623034760716 2.43312113430269 2.53023455998183 0.161490093417490 0.176933396056919 0.166696515790873 0.166637335572971 0.170525216695385 0.16439004079383 0.165246109022820 0.158197196054553 0.161235345869462 0.166508747588844 0.176127231303771 0.163305862896238 0.163455299757265 0.161206619310646 0.164973396709391 0.162410816035888 0.167655174048317 0.166792945621609 0.162103777302769 1 1|0 -|/ 22645837 22646469 22646051.667 22645761 22648812 - gene protein_coding_gene FALSE TRUE AT1G61370.1 S-locus lectin protein kinase family protein similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G11280.2); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.337767265532066 2.97267565522268 0.0128237499953313 1 2.58197611862576 5.4510693172668 0.337767265532066 0.131370950724409
AT4G07390_at 8.33199499973457 8.78601503619065 8.72152060980869 8.92151489808065 9.2551279149445 8.6058056624784 8.18639339608605 7.6228823031375 7.46806866815476 6.90128123967954 7.41436983014743 7.30870304141738 7.2525003928533 7.06733585464975 7.11815485221462 7.46227879902784 7.1582058084696 7.51512550229881 7.07140852096952 0.251001292132918 0.252502237257492 0.258798340516250 0.256374483352125 0.256362588890927 0.257394519995223 0.245732908075538 0.265633275001611 0.255086962502693 0.253920037821053 0.247301794505829 0.245732908075538 0.256825157579671 0.246595208437583 0.247526802749379 0.247383073753135 0.264453964868977 0.269742879283612 0.255765325592819 4 4|0 +|/ 4195862 4197261 4196614.5 4195677 4197568 + gene protein_coding_gene FALSE TRUE AT4G07390.1 PQ-loop repeat family protein / transmembrane family protein similar to PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana] (TAIR:AT5G59470.1); similar to Os07g0479200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059633.1); similar to Cystinosin/ERS1p repeat [Medicago truncatula] (GB:ABD32623.1); contains InterPro domain Cystinosin/ERS1p repeat; (InterPro:IPR006603) 0.392167810703885 2.97187746450459 0.0128419727657475 1 2.58072363134304 15.7709087207590 0.392167810703885 0.171777658458681
AT2G26210_at 8.21767614625578 8.0677602430807 8.30176515228565 8.25475449511505 8.45294983593345 8.4656904084328 7.90129399172711 7.81629615602152 7.3749581971997 7.37970372891752 7.48446363764994 7.3270044201783 7.49731804574021 7.66956187850308 7.52434846421792 7.46378592144216 7.62425258429904 7.64624526088181 7.45512851149305 0.183562334997538 0.172051123305882 0.175244283395639 0.177156838694814 0.187984222887033 0.190456810451313 0.176739470801960 0.187458568852855 0.180777074979045 0.178771300591085 0.172051123305882 0.184794375550298 0.177658799510891 0.172051123305882 0.179053147085624 0.172051123305882 0.181057363084848 0.178537504904573 0.184775067796215 2 2|0 +|/ 11164828 11165414 11165049.75 11164196 11166370 + gene protein_coding_gene FALSE TRUE AT2G26210.1|AT2G26210.2 ankyrin repeat family protein similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18950.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79870.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.247196193040546 2.97176570813758 0.0128445262541514 1 2.58054826776186 15.6512163065152 0.247196193040546 0.0309916379434533
AT3G21800_at 2.31219935144019 2.33128641519143 2.77307140333662 2.45961975344315 2.22111480904919 2.34699081486709 2.09808590326591 2.61639225702151 2.25340850237397 1.8607676711598 2.56956560895472 2.87987430270087 1.84651040624879 2.26151794746415 2.42919695545730 2.36937681218422 2.78794289738438 2.61839893084547 1.77895775119312 0.213293981050542 0.209475250572249 0.209995221490999 0.209475250572249 0.221752859949377 0.224023177825219 0.227036526185451 0.214925097771238 0.213367006319757 0.225628037243937 0.216249525034115 0.209475250572249 0.21125423051274 0.212028970926460 0.212992901103626 0.210453529580533 0.209629457755206 0.213601317426332 0.226634414493291 3 3 - 7680295 7680796 7680563.091 7680113 7681692 - gene protein_coding_gene FALSE TRUE AT3G21800.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21790.1); similar to UDP-glucose glucosyltransferase [Fragaria x ananassa] (GB:AAU09444.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.308314110595138 2.96899283345924 0.0129080467998278 1 2.57619717054802 4.61218306723386 0.308314110595138 0.107112658846308
AT3G54050_at 11.9598802485264 12.0601849434247 11.774635402214 11.5748117038268 12.0218649566038 11.6619428940621 12.6942528101101 12.8223399936109 12.5931713907516 12.6768508331496 12.6907561434282 12.8055037186887 12.5701809648695 12.6805762650649 12.6925917402844 12.7819321195734 12.4105868916678 12.6573657462352 12.4986577398856 0.0808530329353154 0.078962361649617 0.0808211337042353 0.0829180522695774 0.0777496672823194 0.085197388109099 0.0822268414265486 0.0780258049168187 0.0818074458832354 0.0773122354075152 0.077510683351331 0.0774345985403566 0.0789759625787403 0.07932112543559 0.0815361171592404 0.0773122354075152 0.0821251716593264 0.0788273421371025 0.0773122354075152 3 0|3 /|+ 20028850 20029191 20028970.9 20027883 20029758 + gene protein_coding_gene FALSE TRUE AT3G54050.1 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (FBP) [Arabidopsis Thaliana] (GB:P25851;GB:Q9M398); similar to fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative [Arabidopsis thaliana] (TAIR:AT1G43670.1); similar to Fructose-1,6-bisphosphatase, chloroplast precursor (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (GB:P22418); similar to fructose-1,6-bisphosphatase precursor [Brassica napus] (GB:AAD12243.1); similar to Fructose-1,6-bisphosphatase, chloroplast precursor (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (GB:Q07204); contains InterPro domain Inositol phosphatase/fructose-1,6-bisphosphatase; (InterPro:IPR000146) -0.27711202447189 -2.96699411842412 0.0129540290636683 1 2.57306084211374 24.6966124623751 -0.27711202447189 0.0766029865618903
AT1G64750_at 7.40055845573478 7.7407170988673 7.34583423590438 7.64780170090006 8.00552050975443 7.42137750931543 6.90023652379532 7.1349297429723 7.26304876458565 6.73813747346097 7.64490575381011 7.31846927830298 7.09395055281278 7.34799853593908 7.55318283471517 7.5221147518242 7.30372907346075 6.96171223418696 6.91603436892971 0.170913739646511 0.167226381739923 0.165034052132399 0.168947332935606 0.162463390567511 0.170606377824430 0.163748807752394 0.167808689596789 0.175822623508831 0.162372429959906 0.170042544051215 0.160975693082225 0.160001835047961 0.16323188702496 0.168702355969466 0.167222669623220 0.167446451124454 0.164881080878443 0.164099750849642 1 1 - 24056473 24057347 24057099.273 24056180 24057568 - gene protein_coding_gene FALSE TRUE AT1G64750.1|AT1G64750.2 ATDSS1(I) Identical to Probable 26 proteasome complex subunit sem1-1 [Arabidopsis Thaliana] (GB:Q9XIR8); similar to ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) [Arabidopsis thaliana] (TAIR:AT5G45010.1); similar to Os01g0316800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042880.1); similar to Os01g0273000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042712.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAA90391.1); contains InterPro domain DSS1/SEM1; (InterPro:IPR007834) 0.340937020757770 2.96671673085737 0.0129604236340705 1 2.57262557230811 14.6074543450923 0.340937020757770 0.134404128158743
AT2G40420_at 7.6377044678147 7.94557016796507 7.70704748030932 7.96733317802071 8.87394081289558 8.58659617672357 8.28090925063093 8.4288829333575 7.39349758667742 7.21070860975841 7.39800099427122 7.10837185281621 8.1903341550238 7.65200899088892 7.23772331286329 7.51124127977378 7.75812718613942 7.7629711754204 7.02399965193313 0.210143556901675 0.211281887540731 0.211884585808728 0.219959202268962 0.207346544152041 0.228889377332751 0.211308597345983 0.206658593417924 0.221746474923782 0.220398872656367 0.209183633819984 0.218744937486272 0.206312619071396 0.21171932033084 0.220855378480762 0.207694760407265 0.214268711807196 0.210420908407431 0.212899148776297 2 2|0 +|/ 16885424 16885795 16885584.111 16884301 16886292 + gene protein_coding_gene FALSE TRUE AT2G40420.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G56200.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE86055.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.289204062994278 2.96631959586098 0.0129695842536753 1 2.57200239740091 15.5718727173926 0.289204062994278 0.0894197217874427
AT3G09870_at 1.57211194670315 1.91993181849192 1.86207581485729 1.73522906941778 1.17343277843103 1.83105915096114 1.80354832325832 1.72959706306317 2.81580405014264 2.45603952910864 1.85490371145221 1.99261125792594 1.81935549404823 1.86840135647160 2.42638695720622 1.7887839962118 1.70364499488274 1.93535177698204 2.20214633554076 0.190033174919923 0.190318432349409 0.192729005170529 0.188866573549527 0.188468441695191 0.184405940466034 0.188447429360754 0.200480118738256 0.193427325934679 0.200292144329958 0.185580301348838 0.192907518632423 0.187865207604157 0.188663659116979 0.191217391728699 0.184405940466034 0.187046296478298 0.190649913007534 0.186789083618087 3 3 - 3027593 3027845 3027710.818 3027429 3027962 - gene protein_coding_gene FALSE TRUE AT3G09870.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G28085.1); similar to Auxin-induced protein 6B (GB:P33083); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.33674905645604 -2.96531807573307 0.0129927150352342 1 2.57043083376976 3.91087820302044 -0.33674905645604 0.131226336556012
AT1G47765_at 1.24170162927108 2.23883297694908 1.90300033375856 2.47352283929429 1.49991080359918 1.52587277069711 1.76012646104769 1.96937164883939 1.85553978059551 2.59139967118769 1.64649992041557 1.74672441678564 1.33325814902448 1.59764366242575 1.01577929701323 1.37356578902968 1.24596751253208 1.82679934190927 2.73088144157991 0.21734244370193 0.228383667272434 0.226629816280566 0.226142744993264 0.219888599529859 0.221645466948328 0.21734244370193 0.227617686441304 0.222937689611302 0.22062775499244 0.217613228170613 0.229728792373077 0.221602356864084 0.22311406097359 0.220449101361041 0.217367596688972 0.221399873192509 0.218149737810145 0.227988882401261 1 1 - 17577371 17577920 17577632.091 17577346 17578532 - gene protein_coding_gene FALSE TRUE AT1G47765.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47790.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.435629347750966 -2.96511135292691 0.0129974946048819 1 2.57010644853051 3.75948579573021 -0.435629347750966 0.202127878904182
AT3G52840_at 9.65980182703874 9.6679595765487 9.63644451560302 9.74414012752747 10.2867528078008 9.94471663549593 10.4052765784995 10.1740511858778 9.4457737891796 9.66433413009042 10.2423573341863 10.139708650739 10.3077310147712 10.3382824691979 10.0927822484775 10.224536054477 10.1027815333497 10.1980837798711 9.63942453849976 0.105725374363199 0.103764456938478 0.107962063060430 0.103764456938478 0.104322486023278 0.108593592194040 0.105282290604842 0.105674871165192 0.115510280986199 0.111193076895957 0.113654475710170 0.104021064630417 0.108578804055383 0.105971526990596 0.112954310550110 0.104997920105261 0.107911652895795 0.103780355244007 0.106193962888717 3 3|0 +|/ 19595849 19596853 19596471.889 19592091 19597277 + gene protein_coding_gene FALSE TRUE AT3G52840.1 beta-galactosidase, putative / lactase, putative similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to pear beta-galactosidase1 [Pyrus communis] (GB:BAE72073.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAB21492.1); similar to beta-galactosidase precursor [Carica papaya] (GB:AAC77377.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.274423314663045 2.96417369517411 0.0130191961066568 1 2.56863509376615 19.8343730925775 0.274423314663045 0.0738517380751973
AT4G20010_at 8.1908468204027 8.27791982180192 8.2510229934997 8.4370311367221 8.3857984593851 7.98289808695789 8.77391973149497 8.33812600088703 8.22741105977282 8.32081516826908 7.68791889741968 7.57168305586229 7.83300319447708 7.82409953534078 7.8416606686013 8.1941984978227 8.25847758682589 7.67581372945085 8.49847659694774 0.111631478890777 0.109243555438545 0.119467701876393 0.112120986770392 0.113252242750787 0.123046014583904 0.116651260532607 0.115475050995805 0.127638371464104 0.111105725775932 0.110165768013582 0.112822685083415 0.113217526422273 0.111500822934184 0.115774402558944 0.110621880528353 0.117364265514189 0.125917757142844 0.113626857339717 4 4|0 +|/ 10842946 10843931 10843490.2 10841993 10844134 + gene protein_coding_gene FALSE TRUE AT4G20010.1|AT4G20010.2 PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9); single-stranded DNA binding similar to single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT5G44785.1); similar to mitochondrial SBP40 [Solanum tuberosum] (GB:AAX34397.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Single-stranded DNA binding; (InterPro:IPR010913); contains InterPro domain Single-strand binding protein/Primosomal replication protein n; (InterPro:IPR000424) -0.309529735221798 -2.96361880597697 0.0130320558421708 1 2.56776437127248 16.4345743000881 -0.309529735221798 0.108684063590421
AT3G14610_at 2.89320994405027 2.56653960463254 2.78364851722518 2.72339739262567 3.31225828305214 2.98171290930778 1.96647745451274 1.87990439923838 2.08373859976067 2.05159415661879 2.08102769761296 1.83263109523416 2.13424228051057 2.02657533310327 2.12654735780839 2.06166234487138 2.39919269930778 2.06687624729486 2.31615716573001 0.223675133928475 0.220653143124717 0.235704147135176 0.22910698307188 0.226012639917148 0.246049903050307 0.225983880874783 0.22261342646325 0.223238450863735 0.22044249612886 0.218981982522546 0.226283353841159 0.224203681948952 0.23429947525256 0.223013555452671 0.217751938201314 0.225626087410686 0.233500298942118 0.221479188801180 3 3 + 4913940 4914485 4914252.273 4912473 4914659 + gene protein_coding_gene FALSE TRUE AT3G14610.1 CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.282159583104489 2.96333574551893 0.0130386207824384 1 2.56732019747706 4.75918907441613 0.282159583104489 0.0824690083321812
AT4G11350_at 2.64991785022089 2.86639293650828 3.93331044903645 3.33455030925236 3.13094303808234 2.85264310443961 2.94406329845777 2.81500761592245 1.61751950889613 2.33131141540312 2.18664810072537 1.83890748912876 1.77360364396382 2.05472668634685 2.32742347578254 2.19157115057239 2.50498958841762 2.2882167732407 2.01770332799417 0.198936229319457 0.198936229319457 0.201568144511495 0.213211837586662 0.203243003762546 0.201645006875844 0.198936229319457 0.206417821939089 0.206902813011380 0.199966287357223 0.203990664169911 0.198936229319457 0.202560843467211 0.204536102363660 0.20846937516252 0.200529124511901 0.206538239693644 0.198936229319457 0.212578087719961 4 4|0 +|/ 6903478 6903880 6903678.7 6901677 6904239 + gene protein_coding_gene FALSE TRUE AT4G11350.1|AT4G11350.2 transferase, transferring glycosyl groups| similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT5G41460.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740)|similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) 0.325466206341563 2.96307872942516 0.0130445845661863 1 2.56691689193317 5.13315638238338 0.325466206341563 0.122304648527301
AT4G09900_at 6.61629102915723 6.88400190725537 6.90736740997508 6.97222311276332 7.83131470367082 7.09666037158654 8.48468360179192 8.44665023734146 7.41085106049655 7.62821842402278 6.99890170956897 6.95250280752325 7.20137247198621 7.29663204977145 7.00759193558367 7.25771333665128 7.19751838526786 7.30223424071965 7.25277506395234 0.145099520070644 0.139280161139279 0.141994832412217 0.141401802015468 0.142148799689301 0.152660806077428 0.151562991825476 0.149373065050457 0.152011023254931 0.141370038538395 0.141084138880096 0.144632068068274 0.144384075199421 0.140840515500212 0.141223983996574 0.141213025432671 0.149641568913518 0.146138827175904 0.142324133190854 4 4|0 -|/ 6221785 6223846 6222849.722 6221661 6224131 - gene protein_coding_gene FALSE TRUE AT4G09900.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G33990.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.342410888372035 -2.96249835454944 0.0130580616454380 1 2.56600617650788 14.6961106550050 -0.342410888372035 0.135937594447527
AT4G20020_at 5.34164979490606 5.49979894557057 5.04957939167797 5.29036844466071 4.79002872309433 5.07128572383690 5.09950094243232 5.78602873065905 4.40465801727059 5.12713091197697 4.21061431805227 4.02493441678971 4.32369508538492 4.26670418552281 4.56613965597094 4.59561803950648 4.59081871960325 4.39948493050445 4.50879981149026 0.236165143302205 0.237545668198712 0.241500677975834 0.234508081956314 0.234508081956314 0.238691564402455 0.236259723445589 0.237764835721468 0.234508081956314 0.234508081956314 0.234508081956314 0.243327729832399 0.236386147020407 0.240525492263892 0.234629865553564 0.23520765197596 0.235264365416315 0.234508081956314 0.240694827934925 4 4 - 10844461 10844965 10844766.818 10844141 10846157 - gene protein_coding_gene FALSE TRUE AT4G20020.1|AT4G20020.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44780.1); similar to Proteinase inhibitor, propeptide [Medicago truncatula] (GB:ABE87738.1); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.344687055285136 -2.96226830773053 0.0130634075167312 1 2.56564519037310 9.76725379501947 -0.344687055285136 0.137729816496355
AT1G70660_at 10.0643289610078 10.0982274237042 10.4492630557797 10.4382972318558 10.4199070527907 10.3751720663655 10.3178195412667 10.3954688724756 10.1291442346720 10.3075311802772 10.6657768475096 10.4155565585614 10.5417693862312 10.7918612051715 10.2100463866341 10.6710079263883 10.4682817374135 10.5141450855795 10.3214649483673 0.0909549053254306 0.0880645812682598 0.0933191903504023 0.091943611142954 0.0930225238523847 0.0945523159555027 0.0905449832207966 0.094846878862505 0.0964193111933826 0.0880645812682598 0.0901129296434458 0.089354091485286 0.0892061273697343 0.0885546243315968 0.0944479806521143 0.0884607426602413 0.0925828906443953 0.093056972406936 0.09104883462329 1 0|1 /|+ 26645142 26645582 26645362.125 26644258 26645812 + gene protein_coding_gene FALSE TRUE AT1G70660.1 MMZ2 (MMS ZWEI HOMOLOGE 2); ubiquitin-protein ligase similar to MMZ1 (MMS ZWEI HOMOLOGE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G23260.1); similar to ubiquitin-conjugating enzyme 2 [Arachis hypogaea] (GB:AAZ20287.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.241895419665839 2.96219895759632 0.0130650195202229 1 2.56553636712952 20.7135700737182 0.241895419665839 0.0166887808672361
AT3G45140_at 12.6334693568159 12.5431606165845 11.8161490043585 11.8173587947837 11.5833382115349 11.4344958725573 12.1101873950336 12.0608477553031 11.1309550345564 11.7830504035847 11.4398919522385 11.3003613192032 11.6995677862810 11.4642801786315 11.3142416818528 12.1628417114207 11.4464984705155 11.4470964507886 11.1453541809205 0.0880296444020754 0.0859933060059826 0.0848972725807865 0.0871203319896263 0.0843770675940484 0.0864702263909915 0.0871634029487255 0.0852876540206301 0.0952941860192321 0.0868815307020708 0.0874231745166585 0.0875342275846102 0.0859846136471775 0.0902852271702283 0.0867127483766956 0.0846722281169058 0.088084193688618 0.084326708451995 0.0842575767431293 3 3 + 16539648 16540189 16539906.909 16536395 16540337 + gene protein_coding_gene FALSE TRUE AT3G45140.1 LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precursor (EC 1.13.11.12) (LOX2) [Arabidopsis Thaliana] (GB:P38418;GB:Q8W4E4;GB:Q9M1U5); similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to lipoxygenase 2 [Brassica napus] (GB:AAO03559.1); similar to lipoxygenase LOX1 [Populus deltoides] (GB:AAZ57444.1); similar to lipoxygenase [Nicotiana attenuata] (GB:AAP83137.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.246426619639869 -2.96092712866654 0.0130946179669431 1 2.56354062990035 23.4436095343149 -0.246426619639869 0.0313155188945241
AT2G40610_at 10.3868689468009 10.5378572173878 9.7072198628245 9.67416847035776 10.2833504550605 10.3654285424474 10.2616361859512 10.5761730152604 10.9333414617535 10.9295624655054 11.0651462920806 11.5108271298473 11.7184048180484 10.9795642255407 11.4594197935964 11.6956855191758 10.6203105808674 10.8811974372313 12.1496246281187 0.077185676863855 0.0765741655047728 0.0754335389736442 0.0780817373603416 0.0754218860616035 0.0766334324250496 0.0776676340847187 0.0755759457877928 0.0839734938326617 0.0777383652317094 0.075170349018953 0.075170349018953 0.0777795282923064 0.0816052216506331 0.0762648241262867 0.075170349018953 0.0877358105181504 0.0823308776688285 0.0757553069856398 2 2 - 16956230 16957230 16956561.636 16955941 16957635 - gene protein_coding_gene FALSE TRUE AT2G40610.1 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A8 precursor (AtEXPA8) (Alpha-expansin-8) (At-EXP8) (AtEx8) (Ath-ExpAlpha-1.11) (EXPA8) [Arabidopsis Thaliana] (GB:O22874); similar to ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) [Arabidopsis thaliana] (TAIR:AT5G05290.1); similar to expansin [Vitis labrusca x Vitis vinifera] (GB:BAC66695.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -0.264641026294115 -2.9601760214308 0.0131121296791248 1 2.56236200119423 21.5135023335151 -0.264641026294115 0.0622900837506707
AT4G26400_at 7.84610838046892 8.47384239625729 7.52973356873448 7.80873909862617 8.07992609955076 8.26648957561874 7.17655886450942 7.53927165648424 8.44643625826219 7.92372623408505 7.35371992570524 7.62899277002553 7.2300146926519 7.59960076706449 6.94689661322601 7.39114866839642 6.81468087221189 7.75190440340422 8.20607993330739 0.195851213242149 0.182727282601457 0.182789210683450 0.184944768965796 0.185264311334788 0.178665646296353 0.187855160745059 0.187713659135187 0.197754030924640 0.179710232061940 0.184215992730191 0.182181810610126 0.183016414394283 0.184385886386119 0.198491794859485 0.182145582252949 0.200631683274016 0.186637591934330 0.183273014204654 4 4 - 13344968 13345458 13345211.636 13344817 13346606 - gene protein_coding_gene FALSE TRUE AT4G26400.1|AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G56340.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.345092104131628 -2.95992570663432 0.0131179708847381 1 2.56196920997477 15.6059340288499 -0.345092104131628 0.138255468868396
AT3G28220_at 9.11096546500221 9.35727931110972 5.39028404675463 5.30311913302311 7.40603091371293 6.9698052963802 6.43491505904735 6.72917620323589 5.14573639868590 6.06983805275348 5.68222378222986 8.26226310870517 7.79646907888453 6.08542081490545 6.95359969462009 7.81449200477047 5.37900622981659 6.21451108236684 5.99072740524221 0.310580790308661 0.313190297197145 0.306886203312642 0.317869275760203 0.313092762788187 0.306886203312642 0.311612018087501 0.315415914403496 0.327384013316594 0.306886203312642 0.319482321268143 0.306886203312642 0.306886203312642 0.315336467723731 0.309579899748755 0.308204826769678 0.314481368458339 0.306886203312642 0.311194202978001 3 3 + 10526444 10527644 10526812.455 10525641 10527965 + gene protein_coding_gene FALSE TRUE AT3G28220.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ZW9 [Arabidopsis thaliana] (TAIR:AT1G58270.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.301354944910444 -2.95988471152271 0.0131189277731521 1 2.5619048808902 13.3421630169155 -0.301354944910444 0.101668789207891
AT3G47500_at 10.9344148861404 11.0309406330444 11.0327598675197 11.1181978115486 11.4442113226852 11.2924938867704 11.9527938290836 11.9583981938430 11.4873423562283 11.7178058182601 11.3996502758450 11.2884425607383 11.4953461199913 11.4114646737143 11.1523659004136 11.5441684274663 11.3084208063044 11.3109116784832 11.6302936554275 0.0718601879283107 0.0724896644873764 0.0765458829825937 0.073662668589469 0.072358488522633 0.0808920066823551 0.0731584707546665 0.0718601879283107 0.0738577294518133 0.074447876573085 0.0739129493761787 0.0720319051973898 0.07563062838995 0.0730754090458805 0.0727386013211598 0.0718601879283107 0.0780667980111786 0.0743176770105018 0.0733139691449953 3 3 - 17515278 17515732 17515533.909 17514985 17517042 - gene protein_coding_gene FALSE TRUE AT3G47500.1 CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. Identical to Dof zinc finger protein DOF3.3 (AtDOF3.3) (H-protein promoter-binding factor 2a) (DOF3.3) [Arabidopsis Thaliana] (GB:Q8LFV3;GB:O81600); similar to CDF1 (CYCLING DOF FACTOR 1), DNA binding / protein binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62430.1); similar to AOBP (ascorbate oxidase promoter-binding protein) [Cucurbita maxima] (GB:BAA08094.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.247594400666312 -2.95872998490103 0.0131459097236389 1 2.56009289562286 22.8333564281668 -0.247594400666312 0.0344663253016228
AT2G44100_at 10.6643528484025 10.7572351924828 10.9483614657720 11.0191138286255 11.0110716028858 10.6496746303633 10.5672275159654 10.4893645726005 10.0805364909008 10.2046901554179 10.4580759982051 10.2900093737430 10.4789984703807 10.3214869549867 10.1468593700456 10.3348247530425 10.3488484404637 10.3085564948242 9.97626847519543 0.0930157090239679 0.0944436205256014 0.0996500394624505 0.0948612441552038 0.0928157039755644 0.103264522623183 0.094384481303777 0.0959682711247494 0.101779236918024 0.0972836361441347 0.0941334729319827 0.0931385078587849 0.0929085972778167 0.0983220657876283 0.0954052544942774 0.0937153239130426 0.103150229803343 0.0997952263977063 0.0981572907845342 2 2 + 18250848 18251900 18251394.636 18248768 18253574 + gene protein_coding_gene FALSE TRUE AT2G44100.1|AT2G44100.2 ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1) GDP dissociation inhibitor involved in vesicular membrane traffic similar to RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT5G09550.1); similar to ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2), RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT3G59920.1); similar to GDP dissociation inhibitor [Medicago truncatula] (GB:CAF02075.1); similar to Rab GDI protein [Medicago truncatula] (GB:ABE89690.1); similar to GDP dissociation inhibitor [Cicer arietinum] (GB:CAA06731.1); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005); contains InterPro domain Rab GDI protein; (InterPro:IPR000806) 0.268151395502767 2.95748746740675 0.0131750054121704 1 2.55814314839889 20.9748614683703 0.268151395502767 0.0670915403586293
AT3G44750_at 3.89408924954748 3.91289776304984 3.82423393599764 3.90774413223933 2.5613841467505 2.81526303811992 3.78665930046767 4.23772706616907 2.78357087949294 3.09912299368471 2.73783860880658 3.49835469874041 2.94726602389516 2.58645561272029 3.56632740197405 2.86358920700906 3.17908638352482 3.28845747165166 3.06299456857376 0.189382166422691 0.189698479226618 0.187563144743472 0.190138059365771 0.187608909300679 0.186626273363668 0.194641996625945 0.191015736335742 0.192942926951847 0.190867176291226 0.187828260682470 0.183185603729034 0.188603750053151 0.186402914957482 0.187767158864220 0.191858070095779 0.191256051660164 0.185230583712968 0.186611550406913 3 3|0 +|/ 16309507 16310536 16310000.8 16308966 16310766 + gene protein_coding_gene FALSE TRUE AT3G44750.1 HD2A (HISTONE DEACETYLASE 2A); nucleic acid binding / zinc ion binding Encodes a histone deacetylase. Controls the development of adaxial/abaxial leaf polarity. Identical to Histone deacetylase 2a (HD-tuins protein 1) (HD2A) [Arabidopsis Thaliana] (GB:Q9FVE6;GB:O22238); similar to HD2B (HISTONE DEACETYLASE 2B) [Arabidopsis thaliana] (TAIR:AT5G22650.1); similar to Histone deacetylase 2a (HD2a) (ScHD2a) (GB:Q6V9I6); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.289580626370942 -2.95609057039737 0.0132077935376452 1 2.55595114898605 6.65015886568804 -0.289580626370942 0.0907909377165152
AT4G01930_at 0.88265945620173 0.936671677969393 1.45585223293622 1.52860608029331 1.31963341387475 1.11325446327955 1.05345340487600 1.12351727464943 1.35806141646105 1.18164687163560 1.35089705407852 1.55285134638310 1.19090714105322 1.69170655428094 1.51598392191892 1.24788955938045 0.943109177318488 1.00604012211374 0.961092192280937 0.201499826396273 0.207810352451729 0.204242356373763 0.201499826396273 0.203990717076605 0.207691370904907 0.201607358503449 0.205578185490466 0.205027417486401 0.205374103701784 0.213806619068646 0.206953955843582 0.209969701554048 0.216815489638385 0.206226389032719 0.209154940519008 0.206422083989154 0.207454058068854 0.210947065458473 4 4 - 838803 839313 839000.636 838802 840760 - gene protein_coding_gene FALSE TRUE AT4G01930.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01910.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02180.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01920.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) 0.250375355139273 2.95492558648182 0.0132352009452683 1 2.55412306510667 2.41638430202261 0.250375355139273 0.0408466416750009
AT1G62422_at 5.9355330252183 5.50832551129825 6.42429882299222 6.31982114339752 6.24782765549281 6.14974816640795 5.04112405239506 5.31315523826202 4.90708675645925 4.58071658486884 4.27076716915854 4.06977762427982 4.43932883503367 4.67113139383282 4.33952555442362 4.67304440065714 4.85205180838125 4.12983051207144 4.57363149771825 0.27135577298994 0.277904059997598 0.273584153035127 0.277072685477981 0.277875242935966 0.27135577298994 0.278373400290812 0.273675960071343 0.288523874754881 0.282509280837783 0.276448076901688 0.272906027940517 0.279232248042379 0.276515078461743 0.286767676600692 0.276766104014955 0.276650881707216 0.292722789393239 0.27135577298994 1 1 - 23104183 23104587 23104408.111 23103804 23104698 - gene protein_coding_gene FALSE TRUE AT1G62422.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12020.1); similar to Os11g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067925.1); similar to OSJNBa0043A12.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE02815.1); similar to hypothetical protein LOC_Os11g29810 [Oryza sativa (japonica cultivar-group)] (GB:ABA93811.2) 0.289713353080112 2.95439988964860 0.0132475872143429 1 2.55329814556149 10.4263927562223 0.289713353080112 0.0910870058836505
AT1G48160_at 7.22088793078065 7.27829396726814 6.3889848710249 6.84455414051709 7.00914912609581 6.47550463045603 6.61472708201427 6.7095404448787 5.89312482902657 6.59983864172755 6.11265193601154 6.731630236104 6.22298573119659 6.14928982749947 6.00723019257007 6.38011796478307 5.77056963642473 5.80526845001678 7.07190122337529 0.24062586255518 0.234899960169926 0.246349364408411 0.235816199359146 0.235643075441690 0.241762785581281 0.241764673270275 0.236822703601930 0.246340386944272 0.242181550796922 0.238078016269548 0.243770344841175 0.237009654365635 0.249167946581185 0.247780327157020 0.235923273193439 0.239459233862399 0.250668050979709 0.234270220711182 1 1|0 -|/ 17790479 17791829 17791165.222 17790214 17792693 - gene protein_coding_gene FALSE TRUE AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative Identical to Signal recognition particle 19 kDa protein (SRP19) (SRP19) [Arabidopsis Thaliana] (GB:Q943Z6;GB:Q9LNG9); similar to LOC495049 protein [Xenopus laevis] (GB:AAH84166.1); similar to Os06g0342100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057570.1); contains InterPro domain Ribonucleoprotein complex SRP, Srp19 component; (InterPro:IPR002778) -0.325233866048001 -2.9540662792 0.0132554536645108 1 2.55277464653103 13.1522500548972 -0.325233866048001 0.122930319747782
AT3G42640_at 4.74325128618566 4.61801200290486 4.91119301546115 4.24876284437966 5.23365820510953 4.88148490553482 5.36406550607783 4.60082236980006 6.3395337422836 5.31742089756655 5.21056755902838 4.90551041080658 4.8908165076457 4.91711221351909 4.48963315428898 4.95912876734988 4.81896349624895 4.60696810739761 5.31680202201578 0.225661476213419 0.219693552524354 0.226813589650839 0.218045661372807 0.220686175683938 0.2304988221806 0.221956991189133 0.218316100639517 0.232460171129833 0.235897921191541 0.222092535536834 0.217008248680435 0.225559165195247 0.225609765970470 0.221286951492054 0.219248568147315 0.219545828463381 0.239239343305508 0.217723647209353 3 3|0 +|/ 14738217 14739004 14738509.375 14735295 14739196 + gene protein_coding_gene FALSE TRUE AT3G42640.1 AHA8 (ARABIDOPSIS H(+)-ATPASE 8); ATPase Identical to ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8) (AHA8) [Arabidopsis Thaliana] (GB:Q9M2A0); similar to AHA6 (ARABIDOPSIS H(+)-ATPASE 6), ATPase [Arabidopsis thaliana] (TAIR:AT2G07560.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to proton P-ATPase [Nicotiana tabacum] (GB:AAR32129.2); similar to plasma membrane H+-ATPase [Daucus carota] (GB:BAD16688.1); similar to putative plasma membrane ATPase [Capsella rubella] (GB:ABA18104.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.410422204436904 -2.95058633474215 0.0133377905442170 1 2.54731394541638 10.0790344740938 -0.410422204436904 0.18647109617336
AT1G03040_at 7.66926170358014 8.05792589311586 8.1709914594561 8.14228338189227 8.40681242602061 7.73445552022384 7.86309370762747 7.93763300897716 6.36581722552282 7.13131977740888 7.37601441267284 7.16569788201103 7.69804711411043 7.45745936215869 7.21104845689937 7.62062974379481 7.55367970899696 6.67877784968986 7.19442588946765 0.182206669852942 0.189164610520787 0.193915898345187 0.185711325999344 0.189628164790624 0.211499561662835 0.175379304423968 0.19248228559238 0.213861454677292 0.197572746504681 0.184859458405108 0.180149094114338 0.175379304423968 0.179008620194387 0.177977537743473 0.182102158245943 0.206267400442731 0.196392768745686 0.18433871970569 1 0|1 /|- 704280 705593 704819.25 703906 706631 - gene protein_coding_gene FALSE TRUE AT1G03040.1 basic helix-loop-helix (bHLH) family protein similar to UNE12 (unfertilized embryo sac 12), DNA binding [Arabidopsis thaliana] (TAIR:AT4G02590.2); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.339819402032509 2.94924804278277 0.0133695918523539 1 2.54521391040532 15.1189856111574 0.339819402032509 0.135105043092216
AT1G06770_at 3.92417311305822 4.03817111857858 3.26072611793551 2.85652904222885 4.17832923070845 3.81793546518434 3.66787026285985 3.43107200909704 3.39378205380268 3.23203165845206 3.07843553191684 2.78919858978543 2.94881321039407 2.91672084776700 2.92506932169598 3.02562631587211 3.20715645163254 3.2891262681465 3.54863664122419 0.242341820265384 0.238264701873513 0.246099425041848 0.243836305210846 0.229066668389918 0.246269167400128 0.229602030692642 0.229549912236417 0.243403635830555 0.227690006864185 0.230225981702605 0.232329890047193 0.235118247731460 0.238322663912892 0.240391303383927 0.230665099335387 0.234155904653192 0.240299074652646 0.227690006864185 1 1 - 2079232 2080126 2079645.545 2078910 2081938 - gene protein_coding_gene FALSE TRUE AT1G06770.1|AT1G06770.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G30580.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97766.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G30580.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97766.1); contains domain RING FINGER PROTEIN (PTHR10825:SF1); contains domain RING FINGER PROTEIN (PTHR10825) -0.302953397946236 -2.94880840466084 0.0133800554328565 1 2.54452403484517 6.85385167911183 -0.302953397946236 0.104167969020084
AT4G17670_at 6.39819405652366 6.85533715423117 6.71460344781821 7.16412316159072 5.047371386888 4.87214099222756 2.33250762848687 3.60092679561344 2.77400493778096 2.60450294050193 2.67922276877354 2.52361624139179 2.07967441080681 2.62178840706899 2.40205532039562 3.36463141704636 2.54519136409042 2.18105902626612 2.70999212470082 0.305976578849016 0.299710774448630 0.323330266400757 0.301895853986342 0.299364174731504 0.302148782673695 0.295334615396061 0.301127679346714 0.300543353427743 0.300590919385874 0.295792953250978 0.309684640328817 0.298399791540413 0.307005009174403 0.310724951660102 0.301422638144516 0.295334615396061 0.307460362617381 0.302773399587045 4 4 - 9833968 9834610 9834294.273 9833674 9834740 - gene protein_coding_gene FALSE TRUE AT4G17670.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT5G47060.1); similar to hypothetical protein 40.t00027 [Brassica oleracea] (GB:ABD65149.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.503153270118027 2.94741804861654 0.0134132007564640 1 2.54234230421391 7.99606134649305 0.503153270118027 0.247815285216507
AT3G07320_at 3.0852920291454 3.12290960199136 1.46627689964712 1.19235875307104 1.26496402841912 1.38270333346397 2.39399730589962 2.10660179642541 2.85436710665103 2.41206892307518 3.57796950917064 4.74687694481824 3.02151881066067 3.31093230883048 4.37723538059657 2.32704577411030 1.76303083755983 3.46888469931802 2.28175363846774 0.236907769162364 0.241380467444381 0.237436755276932 0.234392384005835 0.230143472517365 0.239922442252219 0.230143472517365 0.235962518042475 0.231187595607939 0.233441273590210 0.232904864907426 0.23856746592111 0.230143472517365 0.236662518123416 0.233481694610681 0.236089371781000 0.244063671058270 0.236198520580397 0.237157861262726 3 3 - 2332525 2332987 2332701.545 2332028 2334080 - gene protein_coding_gene FALSE TRUE AT3G07320.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G23770.1); similar to beta-1,3-glucanase [Salix (GB:BAA89481.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.27125043465668 -2.94739472179640 0.0134137575587684 1 2.5423057000602 4.92201297144008 -0.27125043465668 0.071959316300444
AT2G01420_at 8.9616021421108 8.8404564583506 8.01191398715468 7.99950120423437 9.04459146820252 8.7481681125879 8.77958945603654 9.03572156959257 9.52702389763295 9.0033975165737 9.3345796339233 9.4902534726556 9.41633350114707 9.24470109539513 9.56630302332829 9.4313723315688 8.96369369960573 8.88391498853177 9.60619209581005 0.125636319933426 0.128221608950827 0.142422582396767 0.136699316385685 0.128611622492662 0.139747953256406 0.129155807677487 0.135542692662854 0.13778842542147 0.126011560309279 0.132125684376241 0.127000298899906 0.126729687688082 0.127406870317660 0.129088188266720 0.125636319933426 0.13728036325054 0.139027961077893 0.129918389633269 2 2|0 -|/ 180499 181682 181086.125 180104 183327 - gene protein_coding_gene FALSE TRUE AT2G01420.1|AT2G01420.2 PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/ transporter|PIN4 (PIN-FORMED 4); auxin:hydrogen symporter Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452). Identical to Auxin efflux carrier component 4 (AtPIN4) (PIN4) [Arabidopsis Thaliana] (GB:Q8RWZ6;GB:Q9M7Q6;GB:Q9MAS3); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to PIN7 (PIN-FORMED 7) [Arabidopsis thaliana] (TAIR:AT1G23080.3); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.270387957606932 -2.94685422071689 0.0134266656244204 1 2.54145755277414 18.0128256189213 -0.270387957606932 0.0709947808574274
AT1G76450_at 10.0684439831336 10.0844363921715 9.5591449349505 9.46035781436109 10.1985757584684 9.66677261606684 10.8663146018269 10.7813205415872 10.2268307058709 10.6706808057006 10.7981536629309 10.8217035145938 10.4651720450948 10.7474181119357 10.8612964851106 10.6752306314261 9.98605952850553 10.3600238837008 10.4402862563621 0.0964831971092382 0.0948667031807711 0.102096544938150 0.0978490552644521 0.0937854138856718 0.100143017202876 0.0939397199241441 0.0954134588639875 0.103558761868638 0.0924564285109886 0.0942521944854116 0.0951096821547996 0.093972860940512 0.0962030777796514 0.0949956467046596 0.092386760378162 0.104606643605540 0.09463722663271 0.092386760378162 1 1|0 +|/ 28689894 28690976 28690401.9 28689445 28691138 + gene protein_coding_gene FALSE TRUE AT1G76450.1 oxygen-evolving complex-related Identical to Unknown thylakoid lumen protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9S720); similar to thylakoid lumen protein, chloroplast precursor-related [Medicago truncatula] (GB:ABE82597.1); similar to Os08g0512500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062219.1) -0.292733227558528 -2.94663438133925 0.0134319193275903 1 2.541112583805 20.6033282414325 -0.292733227558528 0.0947943509626646
AT1G61770_at 7.86437291522317 8.36064927018307 7.55354416141876 7.62109263005434 7.5746700309351 7.18339579475193 7.68699144593176 7.9643214533837 7.33257433522594 7.36890251741646 7.50852406114724 8.06412370639136 7.07718050421774 7.32421726572775 7.09373724038991 6.95965298079025 6.88652960604185 6.96516612097992 7.47069594980919 0.226538693310645 0.217568177663814 0.226713722799007 0.216387707855655 0.225857579360297 0.237240675924561 0.218151428555421 0.219318519608848 0.248763266343117 0.227991988440668 0.221515848516213 0.222000080637357 0.228030687950699 0.234529696031377 0.228687100650789 0.215705919946371 0.241531095449391 0.231940386907223 0.215705919946371 1 1|0 +|/ 22814717 22815803 22815431.333 22813830 22816272 + gene protein_coding_gene FALSE TRUE AT1G61770.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18140.1); similar to 62114 (GB:AAD21421.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.320870474331752 -2.94637743008936 0.0134380625473979 1 2.54070937949051 15.0389375643325 -0.320870474331752 0.120003206185199
AT3G07560_at 9.49504859648903 9.6224848347045 10.0322633086232 10.0110632281389 10.0258428538282 10.2204172803444 8.89339158240733 9.36715409086765 9.85923536625014 9.78810125748755 10.0366349170510 9.69145995132637 9.9246246213841 9.73663435912224 9.52499431613088 9.85423308358547 9.35140375408857 9.83236266961565 10.0329556287428 0.100207693651398 0.09946255209457 0.104451199207648 0.100310278706825 0.101782582126654 0.104155158045419 0.103049322113748 0.100423096967743 0.117896399813143 0.102178974735499 0.100515555493459 0.097902269958643 0.0986255115810537 0.105027232310824 0.101239541168272 0.100753580410666 0.104609284012597 0.107504260430884 0.097148742574118 3 3|0 -|/ 2411663 2412327 2411981.2 2411327 2413481 - gene protein_coding_gene FALSE TRUE AT3G07560.1 APM2/PEX13 (ABERRANT PEROXISOME MORPHOLOGY 2); protein binding Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); similar to AT3g07560/F21O3_27 [Medicago truncatula] (GB:ABE91475.1) 0.289244799913873 2.94632269532668 0.0134393715173326 1 2.54062349047938 19.5271953268578 0.289244799913873 0.091408181121305
AT2G26240_at 9.64590450016122 9.84292656205639 9.5735876628324 9.83436007970323 9.81385599093469 9.79078488944652 8.30248428004329 8.68444544719487 9.74625906128367 8.5705381303947 9.11778240037995 9.19391557532574 8.8563907183229 9.17195605172162 8.90541899960481 8.84479080851647 8.63575211519916 8.93577221839734 8.74951745980264 0.110012851817264 0.109479701534392 0.112307659872088 0.105261648137006 0.111530837287685 0.114925917894366 0.110043025363128 0.114133508488192 0.116494649591927 0.107010253563192 0.116200025156231 0.105226016279785 0.110558339698539 0.109470263382122 0.111376767127795 0.109435328657986 0.117785666652429 0.105226016279785 0.112197461277454 2 2|0 -|/ 11174592 11175425 11174873 11174335 11175551 - gene protein_coding_gene FALSE TRUE AT2G26240.1 Identical to UPF0136 membrane protein At2g26240 [Arabidopsis Thaliana] (GB:O64847); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43520.1); similar to PREDICTED: similar to MGC82997 protein [Gallus gallus] (GB:XP_419915.2); similar to Os04g0653100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054104.1); similar to Os03g0584300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050565.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.284912217735882 2.94584344284623 0.0134508382136305 1 2.53987145452677 18.4259572989268 0.284912217735882 0.0870873511569976
AT1G17840_at 9.43541311936144 9.63273926291433 9.67593227384456 9.91481611904596 10.7981743715730 10.1907160586696 10.1373530532867 10.069465679824 10.4546521863374 10.0369677282225 10.9992678542706 10.6863318235305 10.8163269648142 10.5871046125072 10.3859214049811 9.98107860746355 9.67367193834522 10.4764079898540 9.92472992885084 0.122914027936041 0.118403588909159 0.118416275419315 0.117732344217729 0.118409092199198 0.122355597827643 0.121130234614902 0.113501028346366 0.123793470071843 0.11667652137139 0.115145594248259 0.113482445848801 0.113482445848801 0.121793421633832 0.117069654100048 0.113482445848801 0.134781474069304 0.120251959539680 0.119196812243188 1 1|0 +|/ 6145136 6145808 6145503.7 6142603 6146514 + gene protein_coding_gene FALSE TRUE AT1G17840.1 ABC transporter family protein Identical to White-brown complex homolog protein 11 (WBC11) [Arabidopsis Thaliana] (GB:Q8RXN0;GB:Q9LMU4); similar to CER5 (ECERIFERUM 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G51500.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G51460.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Os10g0494300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064944.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1); similar to Os04g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053375.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.319073772635263 2.94528888495399 0.0134641189619264 1 2.53900125095139 20.2765998326188 0.319073772635263 0.118592000721786
AT3G16857_at 5.44009127849227 5.71589930400867 5.46599381436265 5.53124565905662 6.27391721778544 6.21592621597796 5.38259982101447 5.51874959921794 4.93725230155793 4.74166811943327 5.01337312633173 4.89893929708885 5.68513003565785 5.22126492661549 4.27169495008263 5.23170203033267 4.90584245936496 4.56670003494787 4.76682668826943 0.175045250624654 0.173647090809332 0.177481105683337 0.178636250225371 0.180888381118364 0.181617697011958 0.173458813217596 0.174862466515187 0.171286615902087 0.180476718143736 0.179758038197960 0.183284838866110 0.176238662328823 0.178731525496719 0.188638633051053 0.175685143960076 0.183351392681658 0.178404190414311 0.184712655646938 3 3 + 5756121 5759118 5757531.75 5755877 5759449 + gene protein_coding_gene FALSE TRUE AT3G16857.1|AT3G16857.2 ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-component response regulator ARR1 (ARR1) [Arabidopsis Thaliana] (GB:Q940D0;GB:Q9LIB7;GB:Q9ZWK0); similar to ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT4G16110.1); similar to type-B response regulator [Catharanthus roseus] (GB:AAQ10678.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.258258773622438 2.94475171316029 0.0134769959134879 1 2.53815832993853 10.5878428107260 0.258258773622438 0.0553308530889408
AT2G19560_at 4.83630186312878 5.33156184566738 4.82538276034821 5.19091142234609 5.8009483093659 5.23779315425337 5.15183762100833 5.55249312086117 4.29625972359534 3.79118970206094 4.90683663618551 4.83743342235083 5.1022864626731 4.52498874123941 4.49654050674891 4.90352131152016 4.41228655377234 4.66129123637571 4.00701378574998 0.257418633059589 0.255346826312546 0.254950587424311 0.259744825945789 0.253978498137430 0.263613076695423 0.243072939376876 0.243072939376876 0.248640372579898 0.253176688868510 0.243625054899771 0.244067131519461 0.247381958789187 0.253993841780916 0.252861707546135 0.243072939376876 0.245658170769325 0.247681101477913 0.25344135037744 2 0|2 /|- 8473429 8475297 8474403.375 8472855 8476198 - gene protein_coding_gene FALSE TRUE AT2G19560.1 proteasome protein-related similar to Transcription-associated recombination protein-Thp1p (ISS) [Ostreococcus tauri] (GB:CAL54827.1); similar to Pcid2 protein [Mus musculus] (GB:AAH06047.1); similar to Os09g0386400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063074.1); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.372435335317403 2.94471933536582 0.0134777724616759 1 2.53810752326248 9.62197168511924 0.372435335317403 0.160163209648700
AT3G46530_at 8.48059171616485 8.7754563222077 8.9406836091202 9.01383669021584 8.62277674489377 8.5450494280069 8.64276377939907 8.66365149085968 8.42839876251536 8.5140156303822 7.23532451860076 7.5787803768434 7.81336956785941 7.90680444191116 7.4566911340628 8.3565258117846 8.2717941191466 7.84029065437576 8.44522630354422 0.124339976836307 0.122231883020241 0.121989156066077 0.120330910225246 0.124135521695302 0.123828340341085 0.125600264794173 0.126431037684584 0.125896339622985 0.125152452518909 0.129162994150329 0.12284041875191 0.126433092366109 0.121081050749834 0.125702034302173 0.120574549821013 0.123882594576125 0.128980686381413 0.120347126946980 3 3 - 17141727 17142265 17141986.455 17141352 17144323 - gene protein_coding_gene FALSE TRUE AT3G46530.1 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Identical to Disease resistance protein RPP13 (Resistance to Peronospora parasitica protein 13) (RPP13) [Arabidopsis Thaliana] (GB:Q9M667;GB:Q9M668;GB:Q9SNC5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G46710.1); similar to disease resistance protein (CC-NBS class), putative [Arabidopsis thaliana] (TAIR:AT3G46730.1); similar to NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81444.1); similar to NBS-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81446.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767) -0.257564264919751 -2.94411771004931 0.0134922100155122 1 2.53716346360482 16.845598461052 -0.257564264919751 0.0543882868509576
AT2G24020_at 8.47209455396076 8.39068199744427 7.54331140867385 7.43637274458225 8.07303430294774 8.00116442300518 8.6713620658147 8.64784132105184 8.36148522510357 8.76929213173883 9.18041145150061 9.51202648706344 8.52226051379655 8.6937384340742 9.49573229681877 9.10880153612041 7.86447304403382 8.67478314750593 8.62730133086335 0.154952794306747 0.146953787197971 0.166726712202601 0.160091563865884 0.152728511989721 0.150012964463809 0.158058860514408 0.147371963106547 0.165279854520229 0.159988764457411 0.146953787197971 0.150760191010956 0.153310222773332 0.170651495441556 0.159856773399567 0.146953787197971 0.166684762003442 0.150925070818994 0.161620382607731 2 2|0 -|/ 10224954 10226319 10225447 10224781 10226428 - gene protein_coding_gene FALSE TRUE AT2G24020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30620.1); similar to Conserved hypothetical protein 103 [Medicago truncatula] (GB:ABE78786.1); similar to Os02g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046090.1); contains InterPro domain Conserved hypothetical protein 103; (InterPro:IPR004401) -0.243261065068333 -2.94393655919791 0.0134965602435279 1 2.53687920509080 16.8882601487348 -0.243261065068333 0.0266876929200749
AT4G01860_at 2.96811246406635 2.23936372175331 2.33555959159801 2.50794152113127 2.53479329745364 2.07384338464281 2.76898440567861 2.55246192268925 2.79748550068585 2.49677035516277 2.38195257713533 2.45181578734632 1.78479978601352 2.34025838271650 2.19221552605343 2.25802029647159 2.22946616937790 2.35347897496757 2.85053361500902 0.221224305597964 0.220700477439387 0.215638313914736 0.216198331554244 0.217042511988077 0.224355747636543 0.216582329066608 0.221939492461375 0.230313481770924 0.214124784940093 0.220359977231862 0.224986257979866 0.218272970707195 0.213766262577374 0.222897247206449 0.223985647171490 0.215870985994873 0.226892558222124 0.213505435018509 4 4 - 801736 802478 802168.2 801032 808060 - gene protein_coding_gene FALSE TRUE AT4G01860.1|AT4G01860.2 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G21540.1); similar to Os03g0111800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048728.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93606.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.367562532974693 -2.94330881786019 0.0135116459856493 1 2.53589416574766 4.97959791919139 -0.367562532974693 0.156721715187513
AT1G06010_at 5.85378289900138 6.08729448263485 5.23393882817617 5.20822048033769 5.05108994692874 5.36461739233315 5.40290806993258 5.91856783092121 4.89064775390622 5.37244412038619 5.13875120338034 5.53280634689051 4.97990441952153 5.7447812510661 5.65581546489861 5.08625678707268 4.9006477978584 5.00053576750843 5.56569338500465 0.201394054343359 0.196019611948433 0.188691726221612 0.191606652536932 0.199055452319742 0.199354668285120 0.191367169420712 0.200486703609826 0.198555901775406 0.20049061494317 0.188851031961187 0.191498948616851 0.196689423210933 0.207154626921025 0.200606918751550 0.191350608584396 0.200526488403352 0.192275226649603 0.204220481935345 1 1|0 +|/ 1823355 1823633 1823525.444 1822617 1823996 + gene protein_coding_gene FALSE TRUE AT1G06010.1 similar to OSJNBa0084K01.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04829.1) -0.311248016001505 -2.94321896163351 0.0135138067774320 1 2.53575316520171 10.7806520577200 -0.311248016001505 0.112071239947323
AT1G31340_at 8.94611327040566 9.11911116435195 9.68868011947189 9.53818889045809 9.43538804959537 8.93554884287232 9.7781914955642 9.78153854567853 9.5242297136596 9.38906237221657 10.0079089975023 9.894530812225 9.80448626176691 9.95261762075237 10.0244659700744 10.1310992868109 9.90224861100723 9.89819572003315 9.165781401833 0.143475755520591 0.144699463743109 0.142625099076321 0.138718471438219 0.131297486977240 0.141914313096946 0.130835736120047 0.136186438304714 0.148583398983607 0.132795636312260 0.130835736120047 0.130835736120047 0.130835736120047 0.133849070834989 0.134952848083993 0.132938482099475 0.149876191560915 0.138168467144427 0.138637160886407 1 1 - 11218105 11219337 11218672.125 11217826 11219439 - gene protein_coding_gene FALSE TRUE AT1G31340.1 RUB1 (RELATED TO UBIQUITIN 1) Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to NEDD8-like protein RUB2 precursor (Ubiquitin-related protein 2) (AtRUB2) (RUB2) [Arabidopsis Thaliana] (GB:Q8RUC6); Identical to NEDD8-like protein RUB1 precursor (Ubiquitin-related protein 1) (AtRUB1) (RUB1) [Arabidopsis Thaliana] (GB:Q9SHE7); similar to UBQ7 (RELATED TO UBIQUITIN 2) [Arabidopsis thaliana] (TAIR:AT2G35635.1); similar to Os09g0420800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063199.1); similar to polyubiquitin 2 [Deschampsia antarctica] (GB:AAM22748.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.29273292702557 2.94273902000968 0.0135253539207508 1 2.53500005099031 19.0586627085954 0.29273292702557 0.0951684723456231
AT2G02410_at 3.84192308976598 3.45966112067529 3.3262556070102 3.17505700301923 4.18208898817997 4.08222798523039 2.63548046558374 2.30637906808011 3.34346092415006 3.10331656165306 3.35524700866745 3.32433047706069 3.03595274205153 3.64937900327031 3.1226285534471 3.23410806847842 2.96204438177367 3.23462715483612 3.42332216568243 0.146271248943506 0.145566250176937 0.142192751246867 0.142917186448373 0.148960452475480 0.142725547406325 0.14024162128815 0.143301955701495 0.141655924650508 0.141613157239644 0.140911605343031 0.139820683302538 0.144518400510990 0.141000189629768 0.138709746440894 0.138143216306436 0.144643205756318 0.141087488047248 0.139760997486023 2 2|0 +|/ 633423 634578 634148.1 632639 634898 + gene protein_coding_gene FALSE TRUE AT2G02410.1 similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07352.1); contains InterPro domain Protein of unknown function DUF901; (InterPro:IPR010298) 0.290151458184989 2.94170320030849 0.0135503090178706 1 2.53337466668461 6.64104561137312 0.290151458184989 0.092752324446175
AT3G51130_at 8.48374100673084 8.73261072733585 8.95044736060283 9.19337787680672 9.32341662936603 8.7330841711047 8.65024262518195 8.5342536238731 8.26241343924685 8.18774042750546 8.38886134115374 7.92029575965177 8.60186497167418 8.5945929306097 7.67750174804098 8.73638808125293 8.33560414980312 8.36409962825457 7.9578887099582 0.150789215254256 0.155699255797431 0.158571661717167 0.159545747405532 0.157590200567607 0.157068713250743 0.152416949004197 0.146184752231887 0.162602124345649 0.153875132621456 0.154720812677501 0.151596848411724 0.155838025174844 0.153787643398471 0.156259888940288 0.147520492338598 0.174572053717177 0.154850783154031 0.154859619840055 3 3|0 +|/ 19006696 19008131 19007469.333 19005120 19008568 + gene protein_coding_gene FALSE TRUE AT3G51130.1 Identical to UPF0183 protein At3g51130 [Arabidopsis Thaliana] (GB:Q9SD33;GB:Q94C31); similar to ENSANGP00000005609 [Anopheles gambiae str. PEST] (GB:XP_310381.2); similar to Os06g0714000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058570.1); contains InterPro domain Protein of unknown function UPF0183; (InterPro:IPR005373) 0.32062819887896 2.94137352028538 0.0135582614173769 1 2.53285734102155 17.0568543868962 0.32062819887896 0.120257083365567
AT1G02816_at 5.87068651070945 6.61157316409371 7.04731039215593 7.34056752512989 7.56330157557896 7.3583831030112 8.0082244705967 8.17879602017947 6.59156050800226 6.19584042394583 7.78456353351863 6.32232650070134 7.32781867758819 7.05370377887909 6.29317537544657 7.11999368806398 6.9252289170681 7.06698038931941 6.54018755262779 0.254748331264485 0.250018666958669 0.251092632073552 0.256759028409067 0.257478977871889 0.258423961659865 0.246466672662053 0.261710081386504 0.268817932731841 0.259203199086798 0.248848455770014 0.248887545161073 0.250931578326097 0.257015609152930 0.249030940183215 0.246943541801139 0.273153477986165 0.259269415733733 0.251088483696197 1 1 + 621672 622045 621839.909 621461 622469 + gene protein_coding_gene FALSE TRUE AT1G02816.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02370.1); similar to Os05g0362300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055314.1); similar to Protein of unknown function, DUF538 [Oryza sativa (japonica cultivar-group)] (GB:AAX95409.1); similar to Os05g0362500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055315.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.352132485144347 2.94072120242169 0.0135740101771401 1 2.53183374101338 13.9619820213978 0.352132485144347 0.145407013627111
AT4G34440_at 2.32575128204965 2.29685660229304 1.83301094040095 1.84452836432334 2.04018536801032 2.26876308695266 2.28368130489675 2.00319052499964 2.77754699884884 2.65783855598644 2.17598264763975 2.12537048597436 2.52075046075987 2.08006904711695 2.64456630075502 2.52498231393601 2.31694475425273 2.56636015269065 2.56033965159285 0.199767111504243 0.192949172403424 0.201995834984100 0.196032600663466 0.197620231038697 0.198121018198417 0.202512440544569 0.194091839942942 0.212983719859900 0.197771915385218 0.197785760858284 0.195252696949949 0.193451761526917 0.197359110825019 0.20399623289628 0.193083854977483 0.201887052177767 0.192866374590619 0.19326318332573 4 4 + 16468044 16468728 16468433.8 16465832 16468960 + gene protein_coding_gene FALSE TRUE AT4G34440.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G18470.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G49270.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18810.1); similar to receptor protein kinase PERK1 [Brassica napus] (GB:AAK21965.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.263305726861663 -2.94052426670711 0.0135787683638619 1 2.53152471492016 4.62930593717415 -0.263305726861663 0.0628477752300838
AT3G06483_at 10.6935062869307 10.8944582582918 10.5874825887447 10.6168617730679 11.1848398919416 10.7508949704114 10.6864933924482 10.4271979384462 9.89950494740976 10.1033488783413 10.593073445488 10.5953410791842 10.5961680831198 10.4057270250448 10.4897492018153 10.6237743646206 10.6320268684777 10.2675481702680 10.1528800852249 0.124870445828831 0.120637593031326 0.1242164630159 0.123806499235678 0.124923470446030 0.128309697882545 0.123753299044501 0.128811824677636 0.136211427339036 0.122610494500905 0.123185078785725 0.122131141311520 0.122013509407275 0.125000464380428 0.127974033714706 0.120637593031326 0.138795891315868 0.135597769342945 0.122158759704565 3 3|0 -|/ 1990749 1991542 1991229.222 1990422 1992750 - gene protein_coding_gene FALSE TRUE AT3G06483.1 PDK (PYRUVATE DEHYDROGENASE KINASE); ATP binding / [pyruvate dehydrogenase (lipoamide)] kinase Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily. similar to mitochondrial pyruvate dehydrogenase kinase isoform 2 [Glycine max] (GB:AAT02656.1); similar to mitochondrial pyruvate dehydrogenase kinase [Brassica napus] (GB:ABA25867.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358) 0.291560281552894 2.94018835326214 0.0135868882772429 1 2.53099760907149 21.0188855542408 0.291560281552894 0.0942770231556212
AT3G44950_at 4.28207748057285 4.25841655420339 4.75819284871833 4.88871199456949 4.80680757409265 4.58453396177207 4.80423777841004 4.33569790531388 5.15626939764367 4.57569915394971 5.2482307841769 5.25957699056263 4.93901551891984 5.00194065790589 5.22644973763821 4.73648472689961 5.50577119744862 5.43666493718079 5.05499912869679 0.18781208428656 0.186784013910717 0.196644261418180 0.188783240966970 0.197143534962119 0.196201554205540 0.191692370854646 0.18887560845709 0.193316129520645 0.193958305655165 0.196313536587128 0.192137236466899 0.185874822370841 0.190615150849655 0.191987978440239 0.185590619652963 0.187601853357509 0.185590619652963 0.200468698188203 3 3 + 16432031 16432203 16432090.5 16432030 16432271 + gene protein_coding_gene FALSE TRUE AT3G44950.1 glycine-rich protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001075308.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078942.1); similar to hypothetical protein YP_0969 [Yersinia pestis biovar Microtus str. 91001] (GB:NP_992344.1) 0.289865878620633 2.94003064678948 0.0135907021419997 1 2.53075014066651 9.63896253500906 0.289865878620633 0.0926336024216333
AT1G60470_at 1.95955974436556 1.95456119695793 2.31351411058542 2.50495401775346 2.21119308917651 2.17720192803341 1.87711634826207 1.84479959790193 1.69660992547012 2.15651308858315 2.18244321367956 1.77822905696979 2.20428312320008 2.04767741064574 1.94855244086161 1.96868316744678 2.32610397409328 1.99679016920907 2.01970952716634 0.200716062746304 0.201611433051584 0.205647154131376 0.208907263083444 0.211858739841681 0.200716062746304 0.211120885059004 0.201001901084066 0.211903785340788 0.207293111227811 0.205197135216213 0.204727000958074 0.208390196785922 0.200716062746304 0.206170020014541 0.200716062746304 0.215526909463405 0.211171613162514 0.209400756176024 1 1|0 -|/ 22282860 22283586 22283291.8 22282642 22284251 - gene protein_coding_gene FALSE TRUE AT1G60470.1 ATGOLS4 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 4); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS7 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 7), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G60450.1); similar to galactinol synthase, isoform GolS-1 [Ajuga reptans] (GB:CAB51533.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.245845518477684 2.93966272972821 0.0135996037794243 1 2.53017281622597 4.11246558742276 0.245845518477684 0.0341203042254338
AT4G39540_at 8.09046136172293 8.08342204911636 7.81143967190993 7.85897978481175 8.27020823766965 7.88705586590364 8.80571529326931 8.52242620904937 8.25472083513543 8.50569322781065 8.24460470971489 8.19828588856124 7.98208470937935 8.34423010887304 8.39036281188777 8.3914973422735 8.05586552896808 8.27874699016555 8.37255526397377 0.124440545297674 0.117781317437839 0.126276333989099 0.120668487053070 0.121816825810348 0.123171707339894 0.117844065853565 0.120519026610200 0.129165794168960 0.120907482975388 0.120801561756822 0.122027697028322 0.125252281619705 0.120809321832184 0.119163332137091 0.120396241003971 0.121653550984117 0.124740461206134 0.123140981956676 4 4|0 +|/ 18379327 18380062 18379657 18378227 18380411 + gene protein_coding_gene FALSE TRUE AT4G39540.1|AT4G39540.2 shikimate kinase family protein similar to ATP binding / shikimate kinase [Arabidopsis thaliana] (TAIR:AT2G21940.5); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) -0.280266009647221 -2.93940182252973 0.0136059198986138 1 2.52976340871794 16.4728966609489 -0.280266009647221 0.0828800068258047
AT3G16560_at 7.26925413475707 7.62001943201487 6.65622588732965 7.06712193260223 7.8831743110339 7.46211068739827 7.66207402768026 8.01269549362047 7.1637311375816 7.2862495529859 7.19988633563412 6.87938039836662 7.08572412811184 7.33003796134078 6.24410629882695 7.10038706107432 6.7253686759026 6.84089404053443 7.22287565822887 0.171308127183620 0.172666176130832 0.175880305894522 0.16513463779853 0.167713121593511 0.169090331885224 0.163251733588766 0.168560165901139 0.173461648234348 0.169975886206148 0.164814799444697 0.164957635202764 0.169714402025644 0.169358114849031 0.179909998289250 0.163251733588766 0.180620819233356 0.180579618232938 0.167193679575944 3 3 - 5636059 5636797 5636399.273 5635602 5638488 - gene protein_coding_gene FALSE TRUE AT3G16560.1 protein phosphatase 2C-related / PP2C-related similar to PLL5 (POL-like 5), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G07630.1); similar to OJ000315_02.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE05356.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.336207452275991 -2.93918435818894 0.0136111865933005 1 2.52942217056609 14.5290887693410 -0.336207452275991 0.133162369315356
AT3G46450_at 5.82171378307687 6.12734084198605 6.41768191674604 6.99610491111622 7.3795716354021 6.82313061301943 6.94291539481805 7.21727709539532 5.46277599053784 6.38241136585247 5.8505017320771 6.09788852909428 6.64343553551116 6.56614647414223 5.6018974862105 6.04037375579211 7.12158493832131 6.66835682979128 6.06000673997158 0.217037584278763 0.216467881006382 0.231234590124154 0.213238698754937 0.228358337771637 0.229263451867535 0.223366368673694 0.228377531113307 0.230596573738918 0.219561083453855 0.217792936573807 0.217975131498426 0.213238698754937 0.213238698754937 0.214861300328747 0.218945343225084 0.224646814708201 0.219547519595655 0.216751938112495 3 3|0 -|/ 17104321 17104959 17104564 17103923 17106624 - gene protein_coding_gene FALSE TRUE AT3G46450.1|AT3G46450.2 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Os03g0820900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051723.1); similar to hypothetical protein SPAC3H8.10 [Schizosaccharomyces pombe 972h-] (GB:NP_593003.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251)|similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Os03g0820900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051723.1); similar to hypothetical protein SPAC3H8.10 [Schizosaccharomyces pombe 972h-] (GB:NP_593003.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.366092809124371 2.93908621640999 0.0136135641266545 1 2.52926816964724 12.8618026200641 0.366092809124371 0.156026032461726
AT2G40720_at 2.58991437238351 2.43362483305483 2.33675049579005 2.55882653523416 2.16979502745217 2.19284274686007 2.39324878407874 2.64044448536211 2.49868498113463 2.64247649758499 2.11191888071397 2.37567798158694 2.35003033911305 2.21658363510263 2.49263067341057 2.30726433903015 2.39256740999534 2.16810891049738 2.7478308806662 0.187172944432043 0.184849723820455 0.196962422002836 0.193394277710323 0.18599904194263 0.190997701908489 0.186724320663942 0.188162951297232 0.184849723820455 0.184849723820455 0.190761997061929 0.184849723820455 0.185411970134003 0.184849723820455 0.189617542684565 0.190101352170565 0.197125105557340 0.190698421671961 0.190404558585908 2 2 + 16996357 16996837 16996579 16994347 16996929 + gene protein_coding_gene FALSE TRUE AT2G40720.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21300.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.263785382999853 -2.93884662963760 0.0136193699889338 1 2.52889221793333 4.88018685551522 -0.263785382999853 0.0636740283484309
AT4G31820_at 8.00755296140585 8.44862719997165 5.9421452768728 6.56872927790634 8.36112785707877 7.86561993415442 7.2652118242768 7.75078954486805 8.10132841464094 8.56927825564472 9.21083413873742 8.94951815340158 8.99133184963935 8.89301037188483 8.63014139744077 8.2948583249097 6.13406345575371 8.24981030635229 8.92100354161958 0.203456131626315 0.197263798510663 0.230381440329563 0.207756554780518 0.199706568372392 0.233724324171023 0.227881945796203 0.198271085837267 0.211400037025931 0.199424012271384 0.208190684692643 0.205458722400777 0.198846834849238 0.213257000546810 0.216492046122491 0.202641763622922 0.254615414363970 0.203903357313331 0.202571576545926 4 4 - 15390795 15391445 15391196.909 15390656 15394436 - gene protein_coding_gene FALSE TRUE AT4G31820.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G67440.1); similar to BTB/POZ; NPH3 [Medicago truncatula] (GB:ABE93900.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) -0.39749026683215 -2.93600808759316 0.0136883455751124 1 2.52443808616573 16.0010918531002 -0.39749026683215 0.178880924626505
AT1G11360_at 7.53627746674492 7.5253923087265 7.48529367059146 7.36395983138156 7.69284667880452 7.48506847424396 6.82478308558344 6.83236563288664 7.65794453974413 7.33399868150847 7.8149904626376 7.49580892534457 7.48714133763303 7.85631408955275 7.59287006333909 7.59437024066851 7.49673610426692 7.76010122114166 7.40668708607302 0.155925251635756 0.161247872994370 0.154171367346247 0.150540719990697 0.160221022962627 0.165870494552585 0.154895111535243 0.162069897797090 0.184864606534356 0.152868496390113 0.156101378184169 0.148990244551218 0.147723011349210 0.154439500350949 0.155611685198136 0.155959309309482 0.163250559297843 0.160470255255813 0.153609449096476 1 1 - 3822179 3822453 3822321.273 3821460 3823053 - gene protein_coding_gene FALSE TRUE AT1G11360.1|AT1G11360.2 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT4G27320.1); similar to Os07g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059943.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC65369.1); similar to Os01g0783500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044454.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.249084496700576 2.93439056339662 0.0137278077858268 1 2.52189994291683 14.8949992226278 0.249084496700576 0.0417021039493433
AT1G29460_at 5.60767785159551 6.37182129776881 6.8289155919656 6.9286105517337 8.00992981428661 7.69222330764438 7.68645400255717 7.87066428862783 7.33512658623612 7.5301164337427 8.41823993277862 8.0900434133759 8.2319496009497 8.00847693510962 8.06669444869615 8.26333133453652 7.18414948763349 7.56511209247282 8.3861583596978 0.215432606003707 0.196362219135469 0.206370740609734 0.213458032354604 0.193727577045663 0.201437881677797 0.200116300390474 0.193559197748274 0.212969839489919 0.194234062449341 0.198110238189599 0.199304682660200 0.198107180192336 0.21303109656346 0.199501541429815 0.197466764789621 0.214242421472133 0.203875947935749 0.199203147487900 1 1 - 10307604 10307943 10307761.545 10307493 10308129 - gene protein_coding_gene FALSE TRUE AT1G29460.1 auxin-responsive protein, putative similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G27780.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.354398992702738 2.9341606440231 0.0137334263274594 1 2.52153916509318 14.9890204793989 0.354398992702738 0.147728805319237
AT4G14160_at 8.34828976920756 8.47866542659137 8.39113574440735 8.49274599111458 8.38494104111425 8.04080531567218 8.3959066522785 8.47376937288911 8.2638688535721 8.0240538746417 8.68375431767882 8.81673333821701 8.80105126091736 8.4707884003881 8.68837266796371 8.70643121604235 8.8430370409579 8.55749353855367 7.91198303646077 0.150012177125188 0.148854901185414 0.155542441276618 0.154341749774739 0.147368137398414 0.165917823926873 0.150303369332265 0.153585547264679 0.164146466262401 0.158479245718705 0.157081039642104 0.14996630095746 0.150329889100221 0.161925426579170 0.155622140947950 0.152908726542819 0.160135663504626 0.147368137398414 0.159039396912752 4 4|0 +|/ 8171904 8172995 8172308.2 8167421 8173363 + gene protein_coding_gene FALSE TRUE AT4G14160.1|AT4G14160.2|AT4G14160.3 transport protein, putative similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Vesicle coat complex COPII, subunit SEC23 (ISS) [Ostreococcus tauri] (GB:CAL55059.1); similar to putative Sec23 protein [Drosophila melanogaster] (GB:CAB81549.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900)|similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Os08g0474700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062030.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.266285842766898 2.93394501495376 0.0137386977568437 1 2.52120081109979 16.7570789029001 0.266285842766898 0.0674279367098673
AT4G02020_at 7.64491303446276 7.7611839868949 8.44072707077984 8.36082807431785 8.22429087931785 7.88458083814537 8.18814791321464 8.27338841905837 6.80607644787736 7.99672955751614 7.62604643375171 7.40975521796665 7.82699598920481 8.04406980268984 7.21270335981995 8.25997640443547 8.30415343551374 7.95160732726684 7.88012237104184 0.153134223747801 0.143559859999623 0.146868433855680 0.156154605988619 0.146757659836571 0.149868850878058 0.150067572510605 0.147109658131057 0.165390122512729 0.152075422489056 0.147630378523180 0.153948871108003 0.154229694838769 0.146726094348423 0.151663395469814 0.147452782848954 0.170566782694463 0.148916821866694 0.150749025383782 4 4|0 +|/ 890572 891718 891188.9 886600 891955 + gene protein_coding_gene FALSE TRUE AT4G02020.1 EZA1 (SWINGER); transcription factor encodes a polycomb group protein EZA1. Also known as SWINGER (SWN). Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG. Identical to Probable Polycomb group protein EZA1 (CURLY LEAF-like 1) (Protein SET DOMAIN GROUP 10) (EZA1) [Arabidopsis Thaliana] (GB:Q9ZSM8;GB:O04246); similar to CLF (CURLY LEAF), transcription factor [Arabidopsis thaliana] (TAIR:AT2G23380.1); similar to SET domain-containing protein [Oryza sativa] (GB:AAN01115.1); similar to Polycomb protein EZ3 (Enhancer of zeste protein 3) (GB:Q8S4P4); similar to PHCLF3 [Petunia x hybrida] (GB:BAC84952.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.26456787404262 2.93318920547740 0.0137571909005523 1 2.52001483555740 15.7924523379287 0.26456787404262 0.0653431219907979
AT1G63350_at 4.29632679514160 4.84023585754442 3.7061510908973 3.7009642434879 4.89026281998229 3.77315154490549 3.24479787353435 3.26425342805838 4.13529883895701 3.84633821096936 3.0945173769148 2.52323044384358 3.15860051224535 3.41217069866532 2.87668761980786 3.27029999875656 3.44724821800334 3.18347651983236 4.40096868735263 0.269551931331195 0.271275696873744 0.276616173233144 0.268478485433208 0.281659720647764 0.282572567139614 0.264313843618602 0.259995537128799 0.279549469889504 0.265465825288192 0.261907774519897 0.266224412577065 0.267387615329562 0.259995537128799 0.264204977299847 0.262635897292272 0.272604050098546 0.266922090483187 0.259995537128799 1 1 - 23498601 23499124 23498864.636 23498600 23501296 - gene protein_coding_gene FALSE TRUE AT1G63350.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Putative disease resistance protein At1g63350 [Arabidopsis Thaliana] (GB:Q9C8T9); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G62630.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63360.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.450263693001231 -2.93307038761809 0.0137601004101517 1 2.51982839320422 7.58867504132812 -0.450263693001231 0.215046452389376
AT1G10090_at 7.47545089898555 7.7282071566633 7.11532630596115 6.90710816008984 7.69018579705863 7.23924616804628 7.34121259840766 7.16295820071851 5.58633525007582 5.84208006448185 6.401521567207 6.76004865544679 6.7953964876597 6.60675117005807 6.03543167479818 6.57622168605268 6.35589771659843 6.34639818705153 5.66984460976631 0.164877880245405 0.16437448412007 0.166847862868919 0.161457666456229 0.165081653787514 0.165069591146330 0.164680883322421 0.167427529052704 0.171359022786617 0.163042298932680 0.162253706748102 0.160891667562180 0.161843840185254 0.165535767438961 0.166267489280695 0.160984706466813 0.167494313165300 0.167910506724800 0.16458105259175 1 1|0 -|/ 3290590 3295071 3292841.857 3290313 3296200 - gene protein_coding_gene FALSE TRUE AT1G10090.1 similar to RXW8 [Arabidopsis thaliana] (TAIR:AT1G58520.1); similar to Os12g0633600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067352.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os03g0673800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050880.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.298148906214807 2.93274186248265 0.0137681482702357 1 2.51931289023701 13.4245260946832 0.298148906214807 0.101257195806650
AT2G38020_at 7.66261619221975 7.96096207445772 7.69556879061476 7.88522752677071 8.25835540561483 7.88554239921378 7.65062426096555 7.30240908591065 6.48786007261742 7.4146846056401 7.47134985709437 7.55574096478203 7.51241064728162 7.31990974633554 7.13855474410068 7.63685380092213 7.2418229722746 7.29940714879345 7.32062616310455 0.218486752131478 0.213954702045345 0.213966863793992 0.215373214848827 0.220143668569541 0.221008909335480 0.231473500590835 0.221780419875880 0.247256122704161 0.217708962556015 0.224497152407524 0.218394616408533 0.213954702045345 0.234394928723745 0.220551003284475 0.213954702045345 0.232523991183923 0.229522122949463 0.213954702045345 2 2|0 -|/ 15917189 15918126 15917711.444 15916986 15921788 - gene protein_coding_gene FALSE TRUE AT2G38020.1|AT2G38020.2 VCL1 (VACUOLELESS 1) necessary for proper vacuole formation and morphogenesis in Arabidopsis similar to Os01g0666800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043804.1); similar to vacuolar protein sorting-associated protein VPS16-like [Oryza sativa (japonica cultivar-group)] (GB:BAB90498.1); contains InterPro domain Vps16, N-terminal; (InterPro:IPR006926); contains InterPro domain Vps16, C-terminal; (InterPro:IPR006925)|similar to Os01g0666800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043804.1); similar to vacuolar protein sorting-associated protein VPS16-like [Oryza sativa (japonica cultivar-group)] (GB:BAB90498.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Vps16, N-terminal; (InterPro:IPR006926); contains InterPro domain Vps16, C-terminal; (InterPro:IPR006925) 0.304818290954563 2.93215525464390 0.0137825301317525 1 2.51839241982177 15.023361474797 0.304818290954563 0.107408834242778
AT1G72310_at 5.45133753374001 5.93429668294637 4.70702329041773 5.06012868945246 5.45012168687628 5.30755817502681 5.41859167625 6.52287293214761 5.13540956260436 6.24305861171909 5.90230341339943 5.98569394768636 5.82104327535585 5.38327692713906 5.74941096807617 5.86798783059522 5.45855411177397 5.65992053155992 6.43922238841823 0.239254874378619 0.239893364818053 0.236151488206107 0.233957982057585 0.236025007084576 0.247631075745704 0.233957982057585 0.24110797334893 0.249599725629411 0.236363591976009 0.242923258634087 0.237973070769957 0.242640053496186 0.246356888368081 0.238855119727709 0.237368122101065 0.242030820774242 0.242638148601662 0.233957982057585 1 1 + 27230484 27231007 27230717.818 27229559 27231207 + gene protein_coding_gene FALSE TRUE AT1G72310.1 ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). Identical to RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3) (ATL1P) [Arabidopsis Thaliana] (GB:Q9XF63); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G53820.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE92645.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.455636528854994 -2.93165076530070 0.0137949107683495 1 2.51760080622494 11.3153683649966 -0.455636528854994 0.218740986190322
AT1G18650_at 4.57513477919288 5.21788924626342 3.46381680858757 3.69648855425879 4.28927965469140 4.96313109461283 5.16614806028355 5.94533251606333 6.76713240552409 6.2451344565718 7.62433562979825 7.22809804519272 6.92692465601764 7.07439087198072 7.38472393051912 6.80932604681155 5.30593359808119 6.86591525932513 7.01656120415856 0.21031132486893 0.217064672080655 0.213920669468324 0.214585159917731 0.210573496666101 0.205690679151077 0.209746270883251 0.207258129731313 0.203412785099724 0.207611066528140 0.203417590252358 0.209765624856535 0.203412785099724 0.203628566719733 0.207886679363291 0.203412785099724 0.207908977959155 0.208387705996774 0.209598387519012 1 1|0 -|/ 6419054 6420354 6419550 6418850 6420549 - gene protein_coding_gene FALSE TRUE AT1G18650.1 glycosyl hydrolase family protein 17 similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); similar to Os07g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060198.1); contains InterPro domain X8; (InterPro:IPR012946) -0.448383569891085 -2.93159800340137 0.0137962062396598 1 2.51751801557478 11.4540186026445 -0.448383569891085 0.213949995934222
AT3G52155_at 6.25086622917718 6.23760539169791 6.2929817234741 6.24231895653458 7.28289592080899 6.07091755584171 6.1274800579762 6.24227744085241 5.39600510830878 6.2012095971636 6.46633274478642 6.35949393944608 6.231662676926 6.51983368172067 6.65048696036379 6.7428635279303 5.18898569675399 6.18050879856162 5.39108797049546 0.268236953803740 0.269577805781513 0.284288119168314 0.267853746237181 0.267373594054776 0.308158013603803 0.264706237256527 0.267043978559057 0.304425394116209 0.266557913269813 0.256443261546169 0.263012165105480 0.283145920777035 0.260064854944249 0.265328907482404 0.256443261546169 0.302963110447191 0.267632357326017 0.27521361022412 3 3|0 +|/ 19354792 19355509 19355202.625 19354673 19355827 + gene protein_coding_gene FALSE TRUE AT3G52155.1 similar to hypothetical protein TQR14A11.4 [Oryza sativa (indica cultivar-group)] (GB:AAZ06218.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 0.443737351947042 2.93149392418210 0.0137987620717284 1 2.51735470105766 12.3210621905289 0.443737351947042 0.210872100746525
AT3G58610_at 10.9092972234876 10.8322994546769 10.5257866483597 10.4299807612317 10.5557260265504 10.5937071226994 11.1346437706233 11.0974193348554 10.8233564821468 11.0280788478741 10.8388409275431 11.1991752547458 10.8526650045955 10.7606465958501 11.2503115712734 10.9405025078688 10.7053501397383 10.9928792247139 11.0212295181250 0.0841948791982908 0.0779660854055918 0.0806494718341056 0.0805324195910054 0.0781513963034917 0.0806282041153968 0.0826517061334889 0.0799730425384967 0.0903354102473977 0.0784225001194164 0.0802580380487652 0.0810617056012058 0.0779660854055918 0.082114353495071 0.0808223473403523 0.0779660854055918 0.0809825153622826 0.079854416789593 0.0801044954346833 3 3 + 21684624 21685584 21685173.273 21682410 21685818 + gene protein_coding_gene FALSE TRUE AT3G58610.1|AT3G58610.2 ketol-acid reductoisomerase Identical to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) [Arabidopsis Thaliana] (GB:Q05758;GB:Q42559); similar to Ketol-acid reductoisomerase, chloroplast precursor (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (GB:O82043); similar to acetohydroxy acid isomeroreductase [Pisum sativum] (GB:CAB61890.1); similar to Acetohydroxy acid isomeroreductase [Medicago truncatula] (GB:ABE82897.1); contains InterPro domain Acetohydroxy acid isomeroreductase, catalytic; (InterPro:IPR013116); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Acetohydroxy acid isomeroreductase C-terminal; (InterPro:IPR000506); contains InterPro domain Acetohydroxy acid isomeroreductase; (InterPro:IPR013023) -0.241061676145643 -2.93116856406264 0.0138067548798591 1 2.51684416691747 21.7099082191471 -0.241061676145643 0.0231761785574862
AT4G39675_at 0.974083460835874 1.67158264686041 1.80495076934559 1.72964686396767 2.13379910494954 2.02991494352036 1.29849104072861 1.08488089100451 0.97907626632448 0.779092410616802 0.969190207516918 0.770412171064952 0.971599101073525 1.25578705928245 0.946622509040686 0.840169128617255 0.980285159910997 0.772105202516495 1.08404921005263 0.212962868089749 0.211983916252459 0.215806158852952 0.221412111110380 0.221597457607116 0.221136943228562 0.218727879811255 0.219359245516341 0.220247607380732 0.211969853943049 0.211843168213736 0.211843168213736 0.212602641195745 0.214290178408415 0.216224113867868 0.2176405770936 0.218304006726646 0.223328230090574 0.225518215046440 4 4 + 18413837 18413998 18413924.091 18413769 18414234 + gene protein_coding_gene FALSE TRUE AT4G39675.1 unknown protein 0.329091882817520 2.93112443427577 0.0138078393319854 1 2.51677492133943 2.53375735500618 0.329091882817520 0.128176977149223
AT4G11650_at 1.45346865789491 1.45578917343900 2.26527926349520 2.68378379517457 1.216417768682 1.12836390146289 1.52598381753454 1.55747008658227 1.42786056772227 1.31579232382985 1.42261410646905 1.01502088274350 1.35462266186015 1.69770709445967 1.54961945890326 1.52015219804709 1.64322949785755 1.88147341731468 1.13388111439378 0.198641379827178 0.202094157047422 0.200105616679513 0.202178027624567 0.198466624304778 0.196478803881163 0.200640493609385 0.196478803881163 0.207644526485507 0.199194927796503 0.203687580159319 0.20245589854002 0.209720712062236 0.199343550817167 0.203682745942182 0.196478803881163 0.200794303051826 0.208433088400061 0.198802617550229 4 4 - 7025133 7025915 7025510.545 7024850 7026140 - gene protein_coding_gene FALSE TRUE AT4G11650.1 ATOSM34 (OSMOTIN 34) osmotin-like protein Identical to Osmotin-like protein OSM34 precursor (OSM34) [Arabidopsis Thaliana] (GB:P50700;GB:Q9T0D2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to osmotin-like protein I [Gossypium hirsutum] (GB:AAQ74156.1); similar to osmotin-like pathogenesis-related protein [Gossypium hirsutum] (GB:AAQ13823.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.271663413866277 2.93101874954862 0.0138104367925691 1 2.51660908781103 3.06235268304426 0.271663413866277 0.0742112590034096
AT1G52380_at 6.97936639178567 7.91463093166445 6.7835333561585 7.23731891063021 7.57183073168605 6.92420281700869 7.35474129246522 7.75457874306989 7.88413930112044 7.67000973620846 7.12978058619018 7.52660636165126 7.25178590961107 7.2713141392326 6.60758299133083 7.06382567297457 6.8285307404908 7.0962783291777 7.39294823298096 0.225964054719029 0.218043759628569 0.233466589872734 0.227201207767998 0.222762270595608 0.237378086005437 0.219245732111531 0.214484910263597 0.214484910263597 0.22335030064015 0.222209189866214 0.222325506969605 0.214484910263597 0.227122726555704 0.234130385544132 0.214484910263597 0.230917355446537 0.220445213629466 0.219491853091472 1 1 + 19514382 19514941 19514629.273 19512652 19515208 + gene protein_coding_gene FALSE TRUE AT1G52380.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein similar to Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G15970.1); similar to hypothetical protein DDBDRAFT_0205337 [Dictyostelium discoideum AX4] (GB:XP_642253.1); similar to Os05g0349500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055271.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.461838608989844 -2.93028631523725 0.0138284516539643 1 2.51545980158801 14.6880231541931 -0.461838608989844 0.222960837166520
AT1G64290_at 2.19352207482227 2.37970637836082 2.30323922272186 2.33267520622143 1.86925475323767 1.94309782740313 2.14349181855994 2.38559610787062 2.14874010178553 2.52599867592481 1.83762754779687 1.90765065268421 2.12628996933530 1.90482690170008 1.66045684711747 1.79903104933546 2.12077457123293 2.47332311501381 2.30959057644725 0.187507037474088 0.187279930463176 0.187914136620538 0.195505327518841 0.199222320589646 0.186801177489304 0.194072550039704 0.190478830399921 0.202074083890212 0.188893842842956 0.188808391983500 0.184961397615075 0.188279468853042 0.192646348401312 0.188481152515346 0.184947323912456 0.193120660471025 0.187833113607004 0.19178797333276 1 1 - 23861058 23861630 23861329.364 23860841 23862151 - gene protein_coding_gene FALSE TRUE AT1G64290.1 F-box protein-related similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT1G64295.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10759.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.256437272724787 -2.92949984422518 0.0138478218855673 1 2.51422572775512 4.34725160689782 -0.256437272724787 0.0546146806353452
AT1G10390_at 7.99002116751828 7.90388988549069 8.03712510874859 7.98970001492158 8.48209045147489 8.2434091028107 7.59763630251909 7.16124943495542 7.60709898951638 7.55366643949837 7.63797898587828 7.84228246174432 7.5820588419976 7.40868182378281 7.45920443769254 8.31557368230833 7.75069982042008 7.35386810395858 7.71653933372796 0.189374822646816 0.189335723562572 0.191487334080405 0.192016922613423 0.192070134086784 0.194733117379235 0.188723728538210 0.193991154377831 0.20092876824701 0.195547507598697 0.18956613565807 0.198904831892811 0.198683006195507 0.195620570813657 0.193698214964279 0.188723728538210 0.198634856175715 0.203409963750244 0.195427351519960 1 1 - 3407506 3407827 3407684.636 3407025 3412844 - gene protein_coding_gene FALSE TRUE AT1G10390.1|AT1G10390.2 nucleoporin family protein|transporter similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to Os12g0166000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066246.1); similar to Nucleoporin autopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95896.1); similar to Nucleoporin autopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95894.2); contains InterPro domain Peptidase S59, nucleoporin; (InterPro:IPR007230) 0.283953618671659 2.92934847437777 0.0138515531464986 1 2.51398820943972 15.5729210705401 0.283953618671659 0.0877423021460247
AT3G04270_at 1.95069952165038 1.98258770020126 2.18164357841558 2.46971679699718 1.83579117961226 2.33731882182822 1.94654293576794 1.99569918194024 1.74999520211611 1.56868408397969 2.45197914537388 2.05399653071332 2.04660575564249 1.98532184172101 2.14620144857533 2.03089559019873 2.32340749521520 1.81294147780718 1.93002047723129 0.211760726094714 0.211159729924917 0.213545818677857 0.217176660779100 0.212260708336176 0.215257268390470 0.213687998574576 0.214992298189243 0.214510564239185 0.216771801089189 0.203091680806411 0.204593358134513 0.207011125887544 0.203091680806411 0.209265468385178 0.209795656837487 0.212765661296069 0.207588276082087 0.210422292845341 3 3 - 1127918 1128032 1127967.364 1127911 1128087 - gene protein_coding_gene FALSE TRUE AT3G04270.1 two-component response regulator contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.297043666101772 2.92876096396779 0.0138660448270989 1 2.51306633294810 4.01549258876743 0.297043666101772 0.100602578996109
AT2G36060_at 10.2036692091106 10.2333492676345 10.4511974725423 10.5143800506103 10.7392993417662 10.4808336765315 10.014542099889 9.86086070998921 10.4062048404555 10.0770619045226 10.3842434525311 10.0953966387680 10.2356353817309 10.2474906118992 10.115864764016 10.3926252794309 10.2789065990815 10.3066650464581 10.1595608807888 0.09889705510667 0.0972327755905811 0.098122494917689 0.101762350564048 0.0998999639368636 0.106429725825663 0.0992959932286111 0.0951765077298036 0.102227797800326 0.0979280399882086 0.0971632732223722 0.0964394081528789 0.0935046381767987 0.0985060539473376 0.099933284661762 0.0983603829828134 0.110944929450989 0.10210249691126 0.103120446595462 2 0|2 /|- 15150117 15150673 15150388.125 15149756 15151261 - gene protein_coding_gene FALSE TRUE AT2G36060.1|AT2G36060.2|AT2G36060.3 MMZ3 (MMS ZWEI HOMOLOGE 3); ubiquitin-protein ligase|MMZ3 (MMS ZWEI HOMOLOGE 3) similar to MMZ4 (MMS ZWEI HOMOLOGE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G52560.1); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ4 (MMS ZWEI HOMOLOGE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G52560.2); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ4 (MMS ZWEI HOMOLOGE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G52560.1); similar to Os09g0297100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062804.1); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.255574955095279 2.92871585157807 0.0138671582102826 1 2.51299554610807 20.5479561520067 0.255574955095279 0.0534218972871852
AT3G01820_at 3.84325974748141 3.88917138758407 4.57547734077840 4.59640577765002 3.66305464749992 4.30321625163433 3.66616745493607 4.02664157808213 3.43985063733105 3.52331426566105 3.84769293358804 3.56913912653561 3.35855867556175 3.80780451436456 3.39213049218891 3.66398888494818 4.35570532954369 3.76337539592437 3.5137430265537 0.232043488538428 0.230237420748558 0.235446868678427 0.237067077806949 0.232226182110593 0.230919874507421 0.233079817220038 0.231927357680577 0.23340700412369 0.227237930007071 0.227237930007071 0.229061588270479 0.227237930007071 0.227237930007071 0.241125354906413 0.230131099405912 0.231248791641603 0.234757095190584 0.230218855071197 3 3 - 294254 295270 294872.545 293761 295465 - gene protein_coding_gene FALSE TRUE AT3G01820.1 adenylate kinase family protein similar to ADK/ATPADK1 (ADENOSINE KINASE), nucleotide kinase [Arabidopsis thaliana] (TAIR:AT2G37250.1); similar to adenylate kinase family-like protein [Solanum tuberosum] (GB:ABB16966.1); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850) 0.327862619134853 2.92824599467427 0.0138787597175504 1 2.51225828401201 7.6764753043377 0.327862619134853 0.127438557876063
AT1G12250_at 9.57136877555192 9.4861398965218 9.2124774205722 9.23790312516005 9.72339247734975 9.19371247433946 10.2208788641558 10.0694535894001 9.7102824330819 10.0658975649676 9.805489075494 9.69990888868601 9.77974189763051 9.97687774576427 9.88658604077745 10.1185894719070 9.73426696761332 9.6811830421485 10.0009864246576 0.109265693184832 0.110741728663975 0.111756979027041 0.111579401283064 0.110301508420883 0.123562678831696 0.112470394585821 0.111654005305957 0.120958524762843 0.113968435140601 0.111485983029339 0.108227034033982 0.108227034033982 0.111659355626525 0.113777198725699 0.108227034033982 0.125072666621606 0.118249732557385 0.108227034033982 1 1 + 4159653 4161213 4160403.909 4159263 4161453 + gene protein_coding_gene FALSE TRUE AT1G12250.1|AT1G12250.2 thylakoid lumenal protein-related similar to thylakoid lumenal 15 kDa protein, chloroplast [Arabidopsis thaliana] (TAIR:AT2G44920.2); similar to Os02g0643500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047560.1); similar to thylakoid lumenal protein-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL56824.1); contains InterPro domain Pentapeptide repeat; (InterPro:IPR001646) -0.292740328350896 -2.92823115712199 0.0138791262388882 1 2.51223500212491 19.4699420939589 -0.292740328350896 0.0965702316016226
AT1G34780_at 7.8405402246781 7.76766042851252 7.33871224295722 7.3091377487346 7.78958775527541 7.53815826172238 8.78854361220584 8.41938275518064 6.77980479704486 6.68761379678719 6.83065768461926 6.85555569294122 7.3135565380353 6.7681211587157 6.35111198630265 7.23727813054133 7.19027380742252 6.04208746582936 6.52285240614991 0.222039172312667 0.214301459077875 0.216784353090216 0.223785658918002 0.216451601430811 0.221438754927087 0.215525022835389 0.225805758082021 0.218942461812392 0.225886814714068 0.221540194361792 0.212246021392608 0.222668458491493 0.228132312079492 0.232107026155144 0.213999440205737 0.223954366902927 0.231677398111486 0.220696872722611 1 0|1 /|- 12748865 12749490 12749171.2 12748549 12750361 - gene protein_coding_gene FALSE TRUE AT1G34780.1 ATAPRL4 (APR-LIKE 4); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. similar to ATAPRL6 (APR-LIKE 6), electron carrier/ protein disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G08930.1); similar to Os02g0754900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048159.1); similar to adenosine 5'-phosphosulfate reductase 3 [Zea mays] (GB:AAW63053.1); similar to adenosine 5'-phosphosulfate reductase 4 [Zea mays] (GB:AAW63054.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.274988055790805 -2.92631895872252 0.0139264433714543 1 2.50923454572474 14.5924673660141 -0.274988055790805 0.078484181093133
AT3G50170_at 0.864881343321478 0.876930402184637 1.10224937946435 0.953630025946248 0.832051138442173 0.525022678495782 0.89193391057756 1.25341717465394 1.28327792510575 1.76420286860174 1.19909135150589 1.08608686355099 1.00912146038170 1.49750714538620 0.859038733975332 0.90513616403745 0.630510331058092 1.18251743244757 1.42720795012054 0.197000156608531 0.200991033984559 0.191416813297558 0.191732964536292 0.197399738855984 0.196634168110522 0.188740120796715 0.190680528120961 0.198394166125568 0.194027467309363 0.193133688322874 0.198957364918840 0.190878773603772 0.193577514040287 0.197999406417211 0.196644968324587 0.203624202109332 0.202786178904378 0.199646086046550 3 3|0 -|/ 18612840 18613526 18613050.5 18612738 18614775 - gene protein_coding_gene FALSE TRUE AT3G50170.1|AT3G50170.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50150.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50130.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50120.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50120.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.281994565706855 -2.92615951519978 0.0139303960957335 1 2.50898436171752 2.18135905658689 -0.281994565706855 0.0860361093503816
AT3G02680_at 1.73806339656083 2.09973269533353 2.32268776437467 2.25764683531708 1.95753409511 1.54558097232691 1.72250256792615 1.78610729995226 1.88143751427332 1.66542837298842 2.49095402502734 1.99806800729705 2.22547304634171 1.82144171456406 2.20068594983337 2.18947334892646 2.30087989741583 2.50269412791073 1.90252587304232 0.209259347395310 0.211821176238888 0.212161087014595 0.205959050070921 0.212066822643006 0.216690377170310 0.205730196322686 0.206017421817746 0.233128848721867 0.221047370192382 0.221282831202203 0.211870041684557 0.213995003218129 0.206056535838660 0.207143363145113 0.208022736700370 0.235440773092942 0.210991434024570 0.214966578024281 3 3 + 578379 578880 578601.889 576385 579566 + gene protein_coding_gene FALSE TRUE AT3G02680.1 NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and MRE11 similar to DNA damage signaling and repair protein [Zea mays] (GB:ABH09757.1); similar to Os10g0487300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064905.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) 0.292002885701094 2.92507054701954 0.0139574225836444 1 2.50727565792039 3.94506829574564 0.292002885701094 0.0961638998892597
AT2G42630_at 3.51007528226546 3.53099699971034 3.52796408737305 3.87638039656659 3.18574597504082 3.46079604521949 3.70001143678358 3.34487541897710 3.49092782694066 3.71760824302773 2.70227862568533 2.79423574231906 3.35543845354316 2.76873929684935 2.87302544635509 2.7498789671426 3.47505496935511 3.15563321361066 3.48431316601709 0.174120082248940 0.168497028731966 0.175431530074289 0.169075476196825 0.176407393429927 0.170953696057340 0.179434293492946 0.175516892627365 0.174991261225001 0.177368802599099 0.172838064566857 0.178749769726673 0.177237952694018 0.170689290479852 0.173005470775046 0.168525889033156 0.175158534205064 0.181879881187438 0.166853984824031 2 0|2 /|- 17765611 17766523 17765969.7 17765609 17767786 - gene protein_coding_gene FALSE TRUE AT2G42630.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G58640.2); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABG54353.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.294382823844206 -2.9250640551347 0.0139575838599195 1 2.5072654715034 6.79139003925174 -0.294382823844206 0.0984444959517792
AT4G14910_at 7.19303229442671 7.33357451978686 7.07579611533348 7.18948866344587 7.36752435583708 6.66752072327242 8.05708340975211 8.23315035524741 7.75517417151128 7.81725285975347 7.81983190893911 7.5499393160691 7.9551026428786 8.14039583205838 7.77920704706442 8.32199464144654 7.07585930148637 7.5751317840016 7.84620106227564 0.161352765553038 0.161236078853260 0.156520990318144 0.160174032419242 0.155148304057514 0.165881513046769 0.161168365885005 0.155019376981671 0.166204940369634 0.155631345365041 0.159571598171956 0.162897958189360 0.157407830657284 0.166463022509891 0.1591506877012 0.154717572672869 0.171246264216328 0.159204473082815 0.156997737003723 4 4|0 -|/ 8528451 8529688 8529042.7 8528163 8530110 - gene protein_coding_gene FALSE TRUE AT4G14910.1|AT4G14910.2 IGPD (Imidazoleglycerol-phosphate dehydratase); imidazoleglycerol-phosphate dehydratase|IGPD (Imidazoleglycerol-phosphate dehydratase) Encodes imidazoleglycerolphosphate dehydratase. similar to imidazoleglycerol-phosphate dehydratase 1 (IGPD1) [Arabidopsis thaliana] (TAIR:AT3G22425.2); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazoleglycerol-phosphate dehydratase; (InterPro:IPR000807) -0.329077117800754 -2.92450533185172 0.0139714710989125 1 2.50638877976864 15.1813423915160 -0.329077117800754 0.128769737830813
AT4G28040_at 1.77200517010899 1.59980666076934 1.4009261460354 1.19008735771317 2.23915715949162 2.77028474677388 0.675256845162527 1.09899487223851 0.958088758209057 1.26638866399108 1.07465643415095 1.24981165000451 1.02383451670833 0.924209486849122 1.60589178472272 0.879263204203074 1.35724913942874 1.53982112847662 1.27928646229699 0.250422805206677 0.255564903296376 0.264295305469761 0.255674320448788 0.279877711335929 0.265571614539954 0.256365210387419 0.265664457438262 0.263630612998209 0.25187129247058 0.261642326890383 0.259878573567947 0.258046860630135 0.253148891123777 0.263996067657075 0.252160399160965 0.254588226140612 0.254691506078732 0.260292728413378 4 4|0 +|/ 13941550 13942163 13941809.4 13940352 13942442 + gene protein_coding_gene FALSE TRUE AT4G28040.1|AT4G28040.2|AT4G28040.3|AT4G28040.4 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G30420.1); similar to putative MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAD33614.1); similar to Os09g0426500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063226.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.326259419334655 2.92232949964565 0.0140256844744853 1 2.50297470486096 2.78069660123687 0.326259419334655 0.12666794614234
AT3G27270_at 2.51482990933351 3.1651130836386 3.16954141902672 2.78373484408732 2.35493676183817 2.95972699710635 3.75237361864222 3.71981258325145 2.30852543212285 2.80840313606868 1.60523420358044 1.95040465121452 2.78368383302828 2.59278573091768 1.39334848762370 2.5221131860283 2.70570447262512 2.12784674982089 2.37964612068269 0.221228042972832 0.243808389093553 0.220530583573705 0.217276492447481 0.218284272194566 0.218009493031594 0.225134818735324 0.235971896177567 0.22134262954644 0.218817884652812 0.239098176347253 0.217276492447481 0.228680853768291 0.22143053488099 0.237642728487293 0.218196157024711 0.230866632356729 0.225470079076785 0.217276492447481 3 3 + 10074736 10075211 10075014.818 10074517 10075397 + gene protein_coding_gene FALSE TRUE AT3G27270.1 similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT5G14280.1); similar to TRAM, LAG1 and CLN8 homology [Medicago truncatula] (GB:ABE79828.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634) -0.379882679235836 -2.92228966833052 0.0140266788847264 1 2.50291220627311 5.40700784910534 -0.379882679235836 0.167652940532347
AT1G21370_at 6.57157801934226 6.78123099384431 6.84794069492131 7.39044486793479 5.98232479707124 6.20901607530486 5.28063078616334 5.07900680164543 5.172803432528 4.99552508556685 4.88212523851265 5.22049485963491 4.39974051294513 5.01900333661553 5.01284873470195 5.06734607968843 5.2665684815978 5.27496430241143 5.05918098508316 0.224058694939804 0.226905059276219 0.234613893103362 0.229404462709061 0.212446858419195 0.225652700765190 0.215332307777715 0.214071266106965 0.21891993290068 0.219463827293569 0.211224483576985 0.218898995479605 0.221361907477710 0.223323048722119 0.216988919996285 0.212331215068576 0.218837206166449 0.214501948302933 0.217237143661159 1 1 + 7484725 7485391 7485098.182 7483770 7485655 + gene protein_coding_gene FALSE TRUE AT1G21370.1|AT1G21370.2 similar to H0315A08.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67583.1) 0.310684950381680 2.92223983762956 0.0140279230347333 1 2.50283401784748 11.3146331016899 0.310684950381680 0.113519943795094
AT1G14670_at 8.76803646039537 9.00423873466679 8.18159772824278 8.38175019727788 8.62651481481795 8.02810358637924 8.76355699844 8.90126306011248 9.15963560414849 8.32600985663564 9.01671339506323 9.2313927137326 8.61362619974625 8.64828509825205 8.75123529040405 8.24138320896114 7.65939017829935 8.6372923483395 8.55125172140627 0.182576245100363 0.168637212828151 0.177150413684790 0.171945468523204 0.174078801063411 0.195261779876782 0.169530733637746 0.168637212828151 0.175729599075359 0.181521286299209 0.170908520459453 0.168637212828151 0.175392463524757 0.178243764574225 0.176005429728098 0.177112299444582 0.187526960127653 0.183089791592461 0.178158220458624 1 1 + 5039540 5040155 5039874.091 5037607 5040523 + gene protein_coding_gene FALSE TRUE AT1G14670.1 endomembrane protein 70, putative similar to transporter [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT2G01970.1); similar to Putative endosomal protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52585.1); similar to putative syntaxin SYP111 [Oryza sativa (japonica cultivar-group)] (GB:BAC57816.1); similar to Endosomal membrane proteins, EMP70 (ISS) [Ostreococcus tauri] (GB:CAL57055.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) -0.316916577510611 -2.92086707600672 0.0140622411351297 1 2.50068005004103 17.2213229632898 -0.316916577510611 0.119007200130228
AT1G78480_at 1.97394138812540 2.14771804207323 1.64691517822426 1.73707979354671 2.66209242584816 2.70731522337673 2.19807364598471 1.97912198207972 1.92373936724647 2.47841808011274 2.67841708281947 3.36667619769173 2.56458599442104 3.22043880147077 2.36329710392223 2.87197129869784 1.87434324947288 2.43389912420206 2.43237424260905 0.214959169839633 0.21258671951701 0.223670933814772 0.220498327142368 0.214007413266330 0.215545027342914 0.21258671951701 0.217736172611422 0.21821112213892 0.216497324426530 0.217060010809472 0.223215561994404 0.215463998116232 0.213297014270123 0.225413157102369 0.219637307205176 0.226424338240599 0.218029181830039 0.21258671951701 1 1|0 -|/ 29530394 29531213 29530791 29530394 29531256 - gene protein_coding_gene FALSE TRUE AT1G78480.1 prenyltransferase/squalene oxidase repeat-containing protein similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar to pentacyclic triterpene synthase [synthetic construct] (GB:AAG41762.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.253581633640516 2.92065227507224 0.0140676186355247 1 2.50034301220071 4.6064726281957 0.253581633640516 0.0514275008596037
AT1G57820_at 3.2063176982663 3.39262893057213 3.21000213209595 3.14789511375226 2.03639977497843 2.64369408835389 3.19337260197368 4.03764905608739 4.23745195560844 3.99463108452655 3.99671094689112 4.45441841490670 3.25194539036985 4.18499316152232 4.39231294266553 3.73317220347418 3.30192672925541 3.91176962304299 3.79297877914545 0.199836984461046 0.196168766213995 0.208868345742074 0.206030408436489 0.196168766213995 0.207960929039571 0.200870525423864 0.213872053042035 0.209572595380697 0.196740725620748 0.205314820450613 0.205963526657126 0.208192893561218 0.201857706902652 0.203234046081718 0.197499043615763 0.206440663467561 0.196168766213995 0.198998072022859 1 1 - 21418012 21419018 21418536.455 21417835 21421611 - gene protein_coding_gene FALSE TRUE AT1G57820.1|AT1G57820.2 VIM1 (VARIANT IN METHYLATION 1); DNA binding Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization.| similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G66050.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G57800.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G39550.1); similar to OSJNBb0096E05.11 [Oryza sativa (japonica cultivar-group)] (GB:CAD40247.2); similar to Os05g0102600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054387.1); similar to similar to A. thaliana AT4g08590 [Arabis gemmifera] (GB:BAC11916.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.401471028836939 -2.92040527608937 0.0140738047608336 1 2.49995545376620 7.06437498264808 -0.401471028836939 0.183158416440284
AT2G40410_at 8.8842270606668 8.73673253791408 8.85382641062999 8.68325300572668 9.34784361924844 8.83890712424339 8.41841752942687 7.9218119709466 8.26592821341888 7.9109072880577 8.12413735207455 8.3158772584822 8.18903161887795 8.39993770917039 8.16177150271446 8.2084683244296 8.29321008451276 8.29972742457718 7.91859372422034 0.174093692305485 0.166439808602412 0.172629026270461 0.174335869691739 0.172313571672269 0.169713331137319 0.172285795590161 0.180770611466388 0.184394713680199 0.180243091944317 0.170399644127537 0.171077165469149 0.173970543601132 0.172878799113295 0.179255704074969 0.175085301350851 0.175596058641626 0.172509926351973 0.180368797751610 2 0|2 /|+ 16881267 16882227 16881731.667 16880477 16882474 + gene protein_coding_gene FALSE TRUE AT2G40410.1|AT2G40410.2 Ca(2+)-dependent nuclease, putative similar to CAN (CA-2+ DEPENDENT NUCLEASE), nuclease [Arabidopsis thaliana] (TAIR:AT3G56170.1); similar to putative nuclease [Eucommia ulmoides] (GB:ABA41005.1)|similar to CAN (CA-2+ DEPENDENT NUCLEASE), nuclease [Arabidopsis thaliana] (TAIR:AT3G56170.1); similar to putative nuclease [Eucommia ulmoides] (GB:ABA41005.1); contains InterPro domain Staphylococcus nuclease (SNase-like); (InterPro:IPR006021) 0.328935341339727 2.91969269708511 0.0140916667195585 1 2.49883737071383 16.8510423579773 0.328935341339727 0.129094992980830
AT4G20270_at 5.16773317214759 5.34523700810424 4.44229798956342 4.02309814231154 4.50948095582858 4.60085727740589 4.65431636373904 5.13771591679367 4.88492836328461 5.03354002044875 5.25516754112631 6.06882570998319 4.28665253527209 5.26461569423059 6.16669011797821 5.26420568576055 4.24188612410339 5.2938134691133 5.60387961144555 0.234287031375966 0.248654430955087 0.242779529283830 0.248955531141009 0.247863086334561 0.241221937679711 0.246955983490543 0.24492948886631 0.245445790638592 0.234287031375966 0.234287031375966 0.241701849949750 0.234287031375966 0.239228088301505 0.237947628744023 0.236013434980865 0.245761707008515 0.243209811017518 0.238579481474376 4 4 + 10952214 10952910 10952593 10949671 10953093 + gene protein_coding_gene FALSE TRUE AT4G20270.1 BAM3 (big apical meristem 3); ATP binding / protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to CLV1 (CLAVATA 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G75820.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to receptor-like protein kinase 3 [Glycine max] (GB:AAF91324.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79572.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.313100456307895 -2.91814666064284 0.0141304989740985 1 2.49641155172149 9.9372661572812 -0.313100456307895 0.115993221820286
AT1G73640_at 1.78514457842944 1.86410195622878 2.07435173472135 2.09102725441979 2.37753109760697 1.93215564600814 1.73520579433836 2.15286198760741 2.16233439772778 2.18025685455832 2.58316567382786 2.26848633201862 2.55599289809816 2.92476475342023 3.21484464068024 2.61504391689595 2.66164348656352 2.48328321185378 2.53638513295378 0.226022905754097 0.210576261851344 0.218534409828598 0.218660313021738 0.215256759906925 0.236466215510657 0.213966853284435 0.208711107750529 0.217926629757295 0.225443391152187 0.214303490545488 0.211514918960468 0.210827542332263 0.208662704469598 0.215750096723307 0.213387661466325 0.21108930831413 0.212547146220830 0.217763491211612 1 1 + 27691173 27691617 27691425.727 27690653 27691788 + gene protein_coding_gene FALSE TRUE AT1G73640.1 AtRABA6a (Arabidopsis Rab GTPase homolog A6a); GTP binding similar to AtRABA6b (Arabidopsis Rab GTPase homolog A6b), GTP binding [Arabidopsis thaliana] (TAIR:AT1G18200.1); similar to RAB11F [Lotus japonicus] (GB:CAA98182.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.302424419897283 2.91793324385291 0.0141358678610295 1 2.49607669011829 4.47974512746157 0.302424419897283 0.106580928086261
AT1G24330_at 3.43784831398225 3.21535403950309 2.75052912824123 2.75474790826168 2.59297448124188 3.24191174534415 3.33342051832865 3.62556437230672 2.97752146890649 2.98437650090553 2.40087869680481 2.76995898391765 2.89676788293141 2.83891669992281 2.86844267187844 3.20998337491304 2.96839245040889 2.73446229128639 2.81388535431454 0.218647139481189 0.218577423458365 0.220946612485335 0.223210016557674 0.224287845299174 0.226635758577060 0.221640836344997 0.236108441738079 0.220907947447881 0.213137152613920 0.225857319570993 0.213614699401591 0.216748157485237 0.217631999853175 0.217006412408396 0.216509507867338 0.232605071638417 0.216041249942407 0.230128609660217 1 1 + 8634268 8634798 8634529.909 8631768 8634824 + gene protein_coding_gene FALSE TRUE AT1G24330.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G27910.1); similar to Os01g0901000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045108.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.328645860896099 -2.91774870249702 0.0141405119854269 1 2.49578713580462 5.99966205817627 -0.328645860896099 0.129037650967852
AT2G04680_at 1.29013057222160 0.965268067070063 0.829419663397646 0.760651925368468 0.95157485548382 0.814867127099475 0.863835410275709 1.16189199694478 0.789971422327426 1.63987533124035 0.621016992194903 0.835707325159583 1.10191724759940 0.78621362610134 0.815833905195208 1.16251413952276 1.07963770532482 0.88220488784329 1.26530083328834 0.17924694191761 0.183941142836090 0.184222938316559 0.184580010453146 0.184583436448890 0.183537291601583 0.184406309344973 0.178320614619686 0.190036194218405 0.179389151350159 0.181951948018877 0.180923653414199 0.184136539399698 0.178320614619686 0.182910657300899 0.178320614619686 0.184461683508184 0.178320614619686 0.181492191178451 2 2 + 1641589 1642107 1641838.182 1640137 1642206 + gene protein_coding_gene FALSE TRUE AT2G04680.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19650.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19660.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37620.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.276119126229196 -2.91642439930616 0.0141738840664510 1 2.4937092480931 2.02587824768421 -0.276119126229196 0.0807613653056055
AT2G26180_at 2.69669330087752 3.0315962063732 3.00556401034342 2.80842659225689 2.47019776822227 2.75060872365722 3.60188547153301 3.43060622409354 3.41185525668058 3.56539357546682 3.35642893069157 3.11339272202615 2.98484625159171 3.41860031897710 3.41796899324950 3.17565235096747 3.25303290330701 3.55022675419780 3.27561800659963 0.229975319213082 0.227823369790739 0.237864329125062 0.226772612126171 0.227741572119585 0.226772612126171 0.235324618881417 0.226772612126171 0.231481591797907 0.232406512787301 0.229797958589321 0.227898160998809 0.241724714007316 0.228639443666444 0.229297609218434 0.226772612126171 0.236904981916121 0.231058646074018 0.227436153380313 2 2 - 11150524 11151001 11150773 11150368 11152181 - gene protein_coding_gene FALSE TRUE AT2G26180.1 IQD6 (IQ-domain 6); calmodulin binding similar to IQD8 (IQ-domain 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G72670.1); similar to Os01g0194200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042285.1); similar to IQ calmodulin-binding re (GB:ABD28517.1); similar to Os01g0708700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044029.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.282674826777837 -2.91288157893499 0.0142635514635062 1 2.48815048580796 6.32514275352382 -0.282674826777837 0.088069353380743
AT1G05560_at 3.73372882842136 4.14714261028588 3.67578716049007 4.01876772272140 4.09158551035252 3.99063098492694 5.06807361698521 5.12748462451493 4.69839300862824 5.40674566121873 4.47828288064764 5.31430351331204 4.17477688078409 5.00969748913863 4.85213687550364 6.02999407414054 5.69684377190469 5.04042076996807 5.13219180231924 0.203316956083651 0.196895940544627 0.206320553389898 0.200551323892312 0.200962260686915 0.200690882182765 0.203906951946434 0.201826858187555 0.209826032059465 0.195569946258534 0.199428556995699 0.195569946258534 0.197000925096966 0.205813682459038 0.195569946258534 0.204541584208319 0.195834042023215 0.199890906818562 0.202249928524698 1 1 - 1645714 1646115 1645921.727 1645497 1647146 - gene protein_coding_gene FALSE TRUE AT1G05560.1 UGT1 (UDP-glucosyl transferase 75B1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. similar to UGT2/UGT75B2 (UDP-glucosyl transferase 75B2), UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05530.1); similar to glucosyltransferase NTGT2 [Nicotiana tabacum] (GB:BAB88935.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.289733850446465 -2.91284674439092 0.0142644359337675 1 2.48809583019811 9.30848372699411 -0.289733850446465 0.0951435758379627
AT3G02290_at 5.24540723317109 5.61776513469625 6.08179510948814 5.52581431744382 6.5956479557155 6.55255332110800 5.48880226384334 5.86879781511577 5.48234174981927 5.14455409700816 5.44413195104024 5.47912788465049 5.65419198846493 5.9032421508846 4.42967192148451 5.34936662668202 4.96612389780951 5.51051357032679 5.29979811951202 0.228240449343447 0.222338437724513 0.231685680758679 0.218883947738885 0.234527366139315 0.221541380918166 0.219201833208777 0.235027722414182 0.234716788180301 0.222127755414669 0.225511927726398 0.223169023078528 0.227925246517311 0.222424003215615 0.226745408957311 0.220268131759533 0.243863185605644 0.224654645000768 0.220965051915142 3 0|3 /|+ 459684 459947 459776.556 458419 461026 + gene protein_coding_gene FALSE TRUE AT3G02290.1|AT3G02290.2 zinc finger (C3HC4-type RING finger) family protein Identical to Ubiquitin-protein ligase At3g02290 (EC 6.3.2.-) (RING finger protein At3g02290) [Arabidopsis Thaliana] (GB:Q8LE94;GB:Q56XU2;GB:Q9SRU5); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15790.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96851.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15790.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96851.1) 0.333453912185165 2.91276437503092 0.0142665275609539 1 2.48796659221895 11.1975450126716 0.333453912185165 0.133377756594407
AT3G51100_at 8.85567196104146 8.7716898117215 8.9746103176281 9.10059263800942 9.13881370409676 8.88461252351654 8.96525085169238 8.64707775913925 7.60174213682454 7.46533953454783 7.74845176092732 7.93342319605998 7.88230608934234 7.75992881392021 7.72087974566348 7.75996431923766 7.9728152228781 7.90236939595326 7.45768949331524 0.197907675511697 0.198424265861438 0.204928745522333 0.200674264530456 0.203692859464336 0.198884734512710 0.201182351192697 0.201850380866101 0.231727619982624 0.21335211352191 0.204549091061219 0.200442167339947 0.197907675511697 0.209246087970266 0.207450405814985 0.197907675511697 0.206131470511084 0.202657318611213 0.203590113529180 3 3|0 -|/ 18991526 18993003 18992283 18991243 18993271 - gene protein_coding_gene FALSE TRUE AT3G51100.1|AT3G51100.2 similar to Os06g0713900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058569.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54105.1) 0.270747481507990 2.91204393385894 0.0142848350452971 1 2.48683621869533 16.5889271323025 0.270747481507990 0.0751895935232916
AT3G29780_at 3.29307772762549 3.04987913084661 3.34157237265674 3.23014482678687 2.27711833836604 2.46848631427019 3.31373606853683 2.99245415466603 2.48607216362148 2.98684099814402 2.52692506157308 2.95989453212152 2.64445446660877 2.48044413435022 2.19291734471898 2.95986118478963 2.78009419015919 2.80637519723714 3.18245697333693 0.225102971610527 0.222924947591257 0.221276647902555 0.225492201831395 0.223235072428814 0.223619300338615 0.222480200839559 0.227857823701703 0.216826901821268 0.220687099045798 0.221540319158385 0.216634656062602 0.224303678072742 0.217538084887708 0.224692691759253 0.216634656062602 0.223993590592791 0.216634656062602 0.220016668939966 3 3 + 11674289 11674549 11674406.909 11674220 11674668 + gene protein_coding_gene FALSE TRUE AT3G29780.1 RALFL27 (RALF-LIKE 27) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.274604460910718 -2.91186770150843 0.0142893169611958 1 2.48655971054039 5.7728056878755 -0.274604460910718 0.0795685369716932
AT1G12000_at 5.99967080950368 5.96706453673978 5.08176862736574 5.44490541309877 4.82920404324771 5.06251574651894 6.29768765015489 6.1345822916623 5.93114657418381 5.99593495160035 6.80714300917942 6.85234977909651 5.74064685983068 6.19499504097934 6.96237182257977 5.78764596464248 5.92535659454806 6.70991409768102 5.85506646579494 0.188000930496560 0.182536195257570 0.185872238801993 0.181502645627831 0.180912297873681 0.191705407774125 0.184876598117321 0.180963640861709 0.183193869714884 0.185911318034445 0.181162545438848 0.186284817262293 0.183547617056425 0.182176101608645 0.192727083353221 0.180416324370371 0.191629247502165 0.185878458451843 0.184352395523427 1 1|0 -|/ 4050165 4051317 4050772.1 4049894 4053833 - gene protein_coding_gene FALSE TRUE AT1G12000.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative similar to MEE51 (maternal effect embryo arrest 51), diphosphate-fructose-6-phosphate 1-phosphotransferase [Arabidopsis thaliana] (TAIR:AT4G04040.1); similar to pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi] (GB:AAC67586.1); similar to Pyrophosphate-dependent phosphofructokinase PfpB [Medicago truncatula] (GB:ABD32662.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41141); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) -0.274991316124954 -2.91135368941329 0.0143023973080976 1 2.48575322838948 11.7521426697499 -0.274991316124954 0.0800495587840888
AT1G18060_at 10.7583985876910 10.7274076872943 10.709557405994 10.6886217350193 10.7993067480717 10.5638040257525 11.8002538486181 11.6977422382950 11.6910239506796 11.8007057499663 11.8601698187239 11.7550838035765 11.7185996420002 11.8874514418403 11.8413436672279 11.9209120316224 11.4552023617537 11.9092810852525 11.7139961592007 0.0517051659683521 0.0517649067034759 0.0513920665275883 0.0515501762331145 0.055781426855371 0.0536477754408505 0.0589029358033571 0.052216979301358 0.0545383390443054 0.0521992824850392 0.050052823834992 0.0503690745445778 0.0515631286197547 0.0544653450834062 0.0502279910726001 0.050052823834992 0.0614082607905087 0.050052823834992 0.0516604173858018 1 1 - 6212075 6213186 6212503.727 6211867 6213437 - gene protein_coding_gene FALSE TRUE AT1G18060.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52789.1); similar to Os01g0120500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041868.1) -0.248682291773884 -2.90905879286114 0.0143609435795624 1 2.4821525790289 22.7325102519829 -0.248682291773884 0.0449172374930716
AT3G12620_at 7.23733869658628 7.54376176644968 7.41081846520897 6.75114723960362 7.9977423432488 7.42266705213969 7.25994210061055 7.10733858677084 6.85069417831167 7.05149795006276 7.96731127842017 7.64218007908952 7.39510268358724 7.4664877308752 7.70136372463144 7.49237224858895 6.72126600114569 7.41946243384114 6.62280786447265 0.213036390278276 0.204362864481358 0.211367871352466 0.207827287575551 0.213680841326717 0.214477223146976 0.213298154862331 0.205498899878000 0.226684405465076 0.203235842578371 0.199234512323133 0.199234512323133 0.210172566348551 0.206893835089099 0.201939000424162 0.203418843070778 0.220234767549060 0.212765862719342 0.20019368463817 3 3|0 -|/ 4009518 4010329 4009896.5 4009282 4011406 - gene protein_coding_gene FALSE TRUE AT3G12620.1|AT3G12620.2 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to serine/threonine protein phosphatase 2C (PP2C6) [Arabidopsis thaliana] (TAIR:AT3G55050.2); similar to Os06g0717800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058597.1); similar to protein phosphatase 2C (PP2C) [Fagus sylvatica] (GB:CAB90634.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.371262547842994 2.90903993264434 0.014361425727436 1 2.48212298791731 14.5000244997297 0.371262547842994 0.162621728724954
AT1G77840_at 8.53090554443532 8.65384130862867 8.97359361269566 8.9376028771106 8.6193047402164 8.53232099222203 8.47661475837082 8.74277645753976 8.29352062740124 8.05805151281832 8.57499492864922 8.4718137509924 8.22490909015387 8.414284041723 8.77558927970792 8.35699311833638 8.1082898822162 8.43127740482213 7.87914122911038 0.106992002481497 0.107931523351795 0.111697658983258 0.108677874876872 0.109549703739966 0.108446554906253 0.108945624873694 0.106992002481497 0.126934529072140 0.123192692334781 0.106992002481497 0.109034232520895 0.114808349368075 0.111727089856951 0.111057323794479 0.106992002481497 0.115313167878995 0.116587613915247 0.116424978664355 1 1 + 29274726 29275250 29275000.182 29273381 29275480 + gene protein_coding_gene FALSE TRUE AT1G77840.1 eukaryotic translation initiation factor 5, putative / eIF-5, putative Identical to Probable eukaryotic translation initiation factor 5-2 (eIF-5 2) [Arabidopsis Thaliana] (GB:Q9S825); similar to eukaryotic translation initiation factor 5, putative / eIF-5, putative [Arabidopsis thaliana] (TAIR:AT1G36730.1); similar to putative eukaryotic translation initiation factor 5 [Oryza sativa (japonica cultivar-group)] (GB:BAD54665.1); similar to Os09g0326900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062885.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Translation initiation factor IF5; (InterPro:IPR002735) 0.253767759474680 2.90901327917252 0.0143621071319731 1 2.48208116942958 16.9317067331616 0.253767759474680 0.053287562880714
AT2G26730_at 6.79853995476658 6.60897664125027 4.18861519241647 4.57819913592396 5.67926570788134 5.00328100808234 6.43256407168247 6.64376004554004 5.09848333714528 5.92716909427997 7.16758280608154 7.78631862725767 6.42022558922185 7.31090611410115 6.79632620617211 6.42017864614043 5.54629628575429 5.88922641240115 5.77635306254523 0.275591592150810 0.276937413367453 0.277669124096107 0.280435961345056 0.273972686849921 0.284121743796323 0.274093946957186 0.296997957332308 0.298669854553281 0.273972686849921 0.274455181608541 0.278169309209460 0.277735153113273 0.286840338066119 0.280573738192193 0.273972686849921 0.287348181083495 0.280670804550345 0.274186498938674 2 2 + 11397849 11398305 11398062.273 11395485 11398719 + gene protein_coding_gene FALSE TRUE AT2G26730.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58300.1); similar to receptor-like protein kinase 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52827.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.346077914666348 -2.90890171220531 0.0143649597294282 1 2.48190612432317 11.8755507616336 -0.346077914666348 0.143673829048886
AT4G16520_at 11.6620927063244 11.7493471761369 12.1273969646039 12.0731417993826 12.3117554792559 11.9669827245336 11.6061602661862 11.6481086409851 12.0908107926362 12.0481496842824 12.2101298677596 11.8882382232885 12.0472562771904 12.2047274755643 11.8910152968197 12.2494346852719 12.081302784676 12.0014152100996 11.8743322503400 0.0834316209336532 0.081678420271103 0.082447103198401 0.083476809695403 0.0836134791037447 0.0871456691472498 0.0821425692907568 0.0828843334996728 0.089819675757887 0.0851563922396223 0.0838587803061849 0.0822149274497392 0.0827586641932592 0.0869181039634646 0.0851491761172244 0.0839264155574123 0.0848331019979912 0.086944147517092 0.084704052155268 4 4|0 -|/ 9306935 9308112 9307312.2 9306686 9308485 - gene protein_coding_gene FALSE TRUE AT4G16520.1|AT4G16520.2 ATG8F (AUTOPHAGY 8F); microtubule binding similar to AtATG8e (AUTOPHAGY 8E), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G45170.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein [Cicer arietinum] (GB:CAD33929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.260325556516714 2.90865171667082 0.0143713537996192 1 2.48151388954397 23.9311836630110 0.260325556516714 0.0626794541618945
AT1G27970_at 9.24438583687959 9.30223409013916 9.60378254807181 9.76123030738323 9.25716498544884 9.30261849276454 9.52905286651106 9.74598464280106 9.06457163027836 9.12391705119267 9.5447381631073 9.36305570457933 9.43499678470006 9.42690399662562 9.53328938381308 9.56596140325522 9.44452275172065 9.57726725393207 8.84556929264125 0.110683417878303 0.106850334236435 0.117091368986876 0.109846056724143 0.110085672075339 0.117738255600354 0.112488099035070 0.109735218344133 0.125525294754847 0.113418659138897 0.108015168989886 0.111302240705936 0.109024654667070 0.112150707451719 0.105571607356575 0.106081771092843 0.116060886766509 0.111195389269888 0.115627153475263 1 1 + 9746924 9747720 9747136.545 9746798 9748451 + gene protein_coding_gene FALSE TRUE AT1G27970.1|AT1G27970.2 NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter|NTF2B (NUCLEAR TRANSPORT FACTOR 2B) Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. Identical to Nuclear transport factor 2 (NTF-2) (NTF2) [Arabidopsis Thaliana] (GB:Q9C7F5); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); similar to ADR013Wp [Eremothecium gossypii] (GB:NP_984109.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075)|Identical to Nuclear transport factor 2 (NTF-2) (NTF2) [Arabidopsis Thaliana] (GB:Q9C7F5); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to nuclear transport factor 2 [Asper (GB:XP_001213756.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) 0.250386998256816 2.90741525754117 0.0144030204198804 1 2.47957393505363 18.7171540153770 0.250386998256816 0.0481022346967551
AT4G35880_at 2.46357034787273 2.7512047656131 2.39304675989235 2.35699409700654 2.41033248852430 1.98843023654340 2.75687039766943 2.7310479318858 1.71701153482804 2.71385412742923 3.09706406046211 4.09945224443435 3.23432308171916 3.58731221302667 3.861400352826 2.67126768123959 2.66565599422861 3.5716271026283 2.75272373983749 0.277482596527473 0.269379141800797 0.270755478066681 0.269379141800797 0.273398317521436 0.279431050878263 0.275617892617536 0.270059927273996 0.280214888476713 0.272968652308189 0.274365530041476 0.292528982178686 0.272911658823883 0.284378956069495 0.282512494125787 0.269379141800797 0.281239513154036 0.272169155273638 0.269379141800797 4 4|0 +|/ 16994425 16995698 16994941.714 16993342 16995823 + gene protein_coding_gene FALSE TRUE AT4G35880.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT2G17760.1); similar to H0209A05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66084.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.282755287676863 2.90740986749925 0.0144031586159863 1 2.4795654783294 5.35295844913538 0.282755287676863 0.0886981820772192
AT1G31500_at 4.75837108101382 5.14125303372627 4.96291603461979 4.68959370541024 5.49523185911287 5.12572695396992 6.12588258241104 5.68927050249146 4.58813166972569 5.36298381173855 5.01470373427123 4.83898695355246 4.83922901421676 4.69295545720837 4.67058873135988 4.77291403270808 4.59584014415613 4.94421388599893 5.31391758177429 0.253206613152168 0.251741617141045 0.248683433023792 0.247903469866451 0.248937329663902 0.25123336716226 0.247222042190918 0.248614876299731 0.261400792200221 0.245507312123314 0.246092932135724 0.243348052652385 0.248412862078667 0.261905277958274 0.263536453137087 0.243348052652385 0.265480528251487 0.245969346656241 0.246041915081015 1 1|0 -|/ 11273849 11274462 11274075.6 11273586 11276558 - gene protein_coding_gene FALSE TRUE AT1G31500.1|AT1G31500.2|AT1G31500.3|AT1G31500.4 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G31530.1); similar to Os05g0389500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055434.1); similar to hypothetical protein SPCC31H12.08c [Schizosaccharomyces pombe 972h-] (GB:NP_587901.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.326246260930653 -2.90594344792019 0.0144408058468378 1 2.47726474565130 10.1907923933928 -0.326246260930653 0.128161866536065
AT2G25780_at 1.94368372709273 2.19917829675387 1.77913998394356 1.91795397360669 2.50772257383535 2.62416620837872 1.34915123384468 1.59505443981717 1.55854816659681 1.67513754389734 1.89589267175553 1.52438296693179 1.66811254796365 1.43805204609948 1.44329948790872 1.56107401023637 1.70551206168019 2.00151984044271 1.44744331268194 0.190830760845469 0.197386975386949 0.194629105361956 0.191229931067472 0.195489893522655 0.199042353105231 0.192168204484368 0.190830760845469 0.191965364794518 0.203519967742557 0.199227230251472 0.196312487968802 0.200105511171175 0.197409170216127 0.196371488449262 0.198602344180577 0.209652162673806 0.193495517784143 0.191947167045412 2 2 + 11002550 11002975 11002796.545 11002247 11003001 + gene protein_coding_gene FALSE TRUE AT2G25780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73203.1); contains InterPro domain Protein of unknown function DUF1677, plant; (InterPro:IPR012876) 0.264916561816289 2.90576189529469 0.0144454736929014 1 2.47697990101411 3.5970598272521 0.264916561816289 0.0689127715968276
AT3G15351_at 5.59589410835533 5.45277737194183 5.91830726674842 5.83836224300996 6.49707725294467 5.89418049430409 5.96520010252175 5.89911260330981 5.61578608691932 5.86370456494575 4.87505019882363 4.46844219753277 5.0689012936415 4.97779112460204 4.63498583100279 5.09452121059885 5.24906072222552 4.82383416179729 5.96475446308621 0.199850293531137 0.194530422806244 0.197857491948720 0.195217603539548 0.194530422806244 0.209894472878152 0.200349592430059 0.201346201761946 0.207793182950488 0.198327068912274 0.19511444020426 0.196510247216735 0.199200254076271 0.203322666015150 0.203387557862746 0.202015903448397 0.204183262621282 0.202028989154226 0.204614713633282 3 3 + 5177064 5177498 5177260.182 5176066 5177655 + gene protein_coding_gene FALSE TRUE AT3G15351.1|AT3G15351.2 similar to Os07g0485600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059659.1); contains InterPro domain Prefoldin; (InterPro:IPR009053)|similar to Os07g0485600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059659.1) -0.303469630701383 -2.90515599058352 0.0144610628926842 1 2.47602927722266 11.2395247874812 -0.303469630701383 0.108725394261693
AT4G15010_at 5.53879940093754 5.56062140741173 6.18600616305936 6.03522749566511 5.23750910197732 5.47396873344908 4.62622796921752 4.66574691408409 4.26211264861944 4.35140933967464 3.95230675374714 4.28681275804687 4.15147109553561 4.27163810250565 4.27449729344816 4.05212429633334 4.75007775040455 4.42799177389489 4.60028934477055 0.214810882185122 0.218126887576716 0.213732734166036 0.218100530337535 0.212385596190525 0.217708076675684 0.214685179767206 0.211516335094542 0.219062494717655 0.210459987990159 0.212210138258819 0.209961734048534 0.225231160149808 0.213731313916858 0.210068284501093 0.20857119344871 0.214336885712403 0.21386430992911 0.210556812320112 4 4|0 -|/ 8573124 8573869 8573536 8572901 8575227 - gene protein_coding_gene FALSE TRUE AT4G15010.1|AT4G15010.2|AT4G15010.3 mitochondrial substrate carrier family protein similar to SAMC2 (S-adenosylmethionine carrier 2), binding [Arabidopsis thaliana] (TAIR:AT1G34065.1); similar to hypothetical protein DEHA0C15268g [Debaryomyces hansenii CBS767] (GB:XP_458298.1); similar to OSJNBa0038O10.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE05654.2); similar to Os04g0527500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053368.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.250795075463155 2.90478200139332 0.0144706936105177 1 2.47544251527744 9.75324777606409 0.250795075463155 0.0491564539492763
AT4G36610_at 1.04547653750191 1.22658715897377 1.27099192189703 1.2930422590014 0.976716742526703 0.906723072443092 1.32888126328487 1.09415072712972 0.964711577843784 1.87090207737507 0.842002132017652 0.901955315128823 1.01056926190713 0.674033134264725 0.77831417304586 0.893599029668522 0.760874352327655 1.22845941199789 1.15581233511952 0.210643702047117 0.212233840291906 0.219364486579742 0.222433087534797 0.210643702047117 0.220640594731848 0.210643702047117 0.210643702047117 0.221933348394984 0.212220547361277 0.220474089594707 0.210643702047117 0.21322336543642 0.213608598881539 0.220688765570811 0.211126216857959 0.22615783160216 0.220222099660300 0.210643702047117 4 4 - 17265575 17266859 17266643.455 17265396 17267320 - gene protein_coding_gene FALSE TRUE AT4G36610.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G18360.1); similar to alpha/beta fold family protein [Lycopersicon esculentum] (GB:AAU03365.1); similar to Os02g0706900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047873.1); similar to Os01g0636400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043665.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.253077450786761 -2.90432017292131 0.0144825951885502 1 2.47471794196087 2.2511718010486 -0.253077450786761 0.0528553290306839
AT3G51260_at 9.32183647276654 9.24067954886862 9.73780961901722 9.6691682457505 9.58955352127457 9.28792985634392 9.57082784956612 9.34121262736933 9.02079168557827 8.9917691817189 9.21209404073806 9.1275876821094 9.09988636807492 9.25308577923468 9.3182791791351 9.15780494275478 9.06921600081153 9.11863271875854 8.5188749878771 0.113364708366091 0.112266648265276 0.115337193859029 0.112054403444484 0.111096000843011 0.123281004839286 0.114924802235011 0.116971471097413 0.120388721711260 0.114247682451470 0.110368209443167 0.112553646909931 0.112524199818239 0.109663037528341 0.116101386631249 0.111134488804849 0.118957685743646 0.108042068699488 0.120110793243667 3 0|3 /|+ 19042801 19043150 19042967.2 19041974 19044043 + gene protein_coding_gene FALSE TRUE AT3G51260.1|AT3G51260.2 PAD1 (20S proteasome alpha subunit D1); peptidase 20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase. Identical to Proteasome subunit alpha type 7-A (EC 3.4.25.1) (Proteasome subunit alpha type 4) (20S proteasome alpha subunit D-1) (TAS-G64) (Proteasome component 6A) (PAD1) [Arabidopsis Thaliana] (GB:P30186;GB:Q41942;GB:Q8LB36); similar to PAD2 (20S proteasome alpha subunit D2), peptidase [Arabidopsis thaliana] (TAIR:AT5G66140.1); similar to proteasome, alpha subunit-like protein [Solanum tuberosum] (GB:ABA40445.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426)|Identical to Proteasome subunit alpha type 7-A (EC 3.4.25.1) (Proteasome subunit alpha type 4) (20S proteasome alpha subunit D-1) (TAS-G64) (Proteasome component 6A) (PAD1) [Arabidopsis Thaliana] (GB:P30186;GB:Q41942;GB:Q8LB36); similar to PAD2 (20S proteasome alpha subunit D2), peptidase [Arabidopsis thaliana] (TAIR:AT5G66140.1); similar to proteasome-like protein alpha subunit-like [Solanum tuberosum] (GB:ABB86280.1); similar to proteasome, alpha subunit-like protein [Solanum tuberosum] (GB:ABA40445.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.264118786590638 2.90389710805717 0.0144935064274058 1 2.47405418781318 18.4765698629580 0.264118786590638 0.0681312650828784
AT3G07565_at 7.30109287196974 7.52973487610395 7.29639554919434 7.63520862854735 8.09760305058587 7.75267196612096 6.96027801792123 7.17418428809282 6.11076727052083 6.42033580370981 6.27437446104813 6.49041521835482 6.48279893087932 6.53040683448025 6.52511530139084 6.52772882000323 6.41173292294437 6.39772339729217 6.43529928765577 0.24684092392849 0.248320737350398 0.245498040190690 0.248056649502785 0.253387198581606 0.244862646389125 0.241705148972152 0.243007037489500 0.261813849424654 0.244717435769954 0.248283317320772 0.241705148972152 0.242664264056222 0.261211038634369 0.245970366092161 0.241907018435835 0.254464036210649 0.248598116004268 0.241705148972152 3 3|0 +|/ 2414011 2415850 2415110.3 2413648 2416283 + gene protein_coding_gene FALSE TRUE AT3G07565.1|AT3G07565.2|AT3G07565.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to OSJNBa0067K08.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03109.1); similar to Os05g0305700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055150.1); similar to H0322F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67770.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26476.1); similar to OSJNBa0067K08.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03109.1); similar to Os05g0305700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055150.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.293525075130267 2.90363176306531 0.0145003541322464 1 2.47363788424645 13.856981709281 0.293525075130267 0.0996838147673895
AT4G39160_at 4.27677891737061 4.55871841355856 4.03155163241062 4.05081010912111 4.10049910577401 3.95175162736111 4.54198850898552 4.02625565520587 4.60931448559869 4.48725145414522 4.30655878688168 4.17262298341499 3.75074477822359 4.31482866882908 4.27559581697113 4.73120019491681 3.88438031260282 4.16730992096226 4.34780124707772 0.210796659288491 0.215386450564248 0.207035013262890 0.217909108694437 0.206981053440684 0.213935124559648 0.208143455375557 0.212405067154939 0.222247582564439 0.213703898875713 0.206211738531328 0.205432283635233 0.211668429015995 0.212703947161333 0.210432084267338 0.211130658452338 0.220250243379661 0.219520765094034 0.210047400326235 4 4|0 +|/ 18238901 18239659 18239345.9 18236786 18239767 + gene protein_coding_gene FALSE TRUE AT4G39160.1 DNA binding / transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to putative Myb-like DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77017.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.299166400601840 -2.90342155700069 0.0145057811825197 1 2.47330808948989 8.53322470211885 -0.299166400601840 0.104975443659197
AT1G17900_at 2.27658662570927 2.33956996986084 2.71301467954859 2.26658312704887 2.065239983011 2.35963179399319 1.92043136051954 1.93275338881789 2.65928257457638 2.51869433107446 2.88539890250974 2.81290065254820 3.35612502733118 2.97173189066886 2.77219690165258 2.8459115363045 2.63103003668099 2.64204100330401 2.39660121528339 0.154539389225356 0.154539389225356 0.155842066825051 0.160838373463562 0.154773969597574 0.158537333499557 0.160243005553061 0.154539389225356 0.160541582293696 0.159643096331374 0.157390147506340 0.155359059032944 0.166528205471311 0.163700010179483 0.155695636615129 0.156158246494249 0.162350237193519 0.154539389225356 0.159567385877135 1 1 - 6157522 6157529 6157525.5 6157361 6158123 - gene protein_coding_gene FALSE TRUE AT1G17900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1); similar to hypothetical protein PF10_0266 [Plasmodium falciparum 3D7] (GB:NP_700739.1) 0.286794839951896 2.90304172919448 0.0145155926560471 1 2.47271217444953 4.92898954982352 0.286794839951896 0.0932066705608062
AT3G61260_at 10.7402691963564 11.0407448773563 10.8551608975355 10.8941770149485 11.3925606673980 11.2569246586006 10.6985287522543 10.7954950096919 11.3545978150736 10.8951895294054 11.9124051213316 11.2646377789849 11.4798220136334 11.3912252627854 11.5312163016073 11.2737715218088 10.9544827315438 11.2519228955044 11.1940516814218 0.0690198675560764 0.0659061183409146 0.063873894835347 0.0638188854851887 0.0642484301600711 0.0688758908147522 0.0638188854851887 0.0691826557031583 0.0686001011683988 0.0641355109027754 0.0641192261930951 0.0638188854851887 0.0650849450667276 0.0672453548287363 0.0646287263627289 0.0640422485404083 0.0736554362691492 0.0676908765086226 0.0638188854851887 3 3|0 -|/ 22686671 22687602 22687262.444 22686213 22687763 - gene protein_coding_gene FALSE TRUE AT3G61260.1 DNA-binding family protein / remorin family protein similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G45820.1); similar to DNA-binding protein (GB:AAA57124.1); contains InterPro domain Remorin, N-terminal region; (InterPro:IPR005518); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.257717731069453 2.90270004741415 0.0145244244548879 1 2.47217610841702 22.2244235319511 0.257717731069453 0.0598497675156542
AT1G24090_at 0.924148466429015 0.806863358038732 1.39180192942391 1.50512969307184 1.26055276075804 1.06173978961917 0.997780782944817 0.882583379062019 1.65650722322762 1.33798510291315 1.49389323656421 1.00643502292243 1.29546788770693 1.29711533697587 1.54552859728022 1.61863493469994 1.60832946651579 1.22343960952352 0.867712323380605 0.201302257688368 0.202452908661671 0.201302257688368 0.206019850293757 0.20314062637679 0.203438797794936 0.205234820742784 0.202577688849491 0.209277785651367 0.201302257688368 0.209227548580054 0.203939275329459 0.216970815161668 0.209082240030878 0.208452278035498 0.205869676176964 0.204348431600044 0.206648371796574 0.214453352876759 1 1|0 +|/ 8522580 8524533 8523842.778 8520823 8524679 + gene protein_coding_gene FALSE TRUE AT1G24090.1 RNase H domain-containing protein similar to nuclease [Arabidopsis thaliana] (TAIR:AT5G51080.2); similar to Os08g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061125.1); similar to putative RNase H domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03047.1); contains InterPro domain Ribosomal protein L9 N-terminal-like; (InterPro:IPR009027); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Putative thiol-disulphide oxidoreductase DCC; (InterPro:IPR007263); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.250333004141373 2.90219452986624 0.0145375009756293 1 2.47138300216472 2.44057855060048 0.250333004141373 0.0487621300936192
AT2G03680_at 10.3166183341713 10.2332980794406 10.4381947448858 10.4715963424702 10.3450199915951 9.93582752840173 9.82069356872952 9.99993534938825 10.1468931311087 10.0518194018936 10.3297490150749 10.5936115070714 10.3867947769775 10.4875639423607 10.3767272274405 10.2368573045354 10.1414733358204 10.2320520464166 9.82273121205483 0.104929454492277 0.100879495251935 0.107042282376154 0.101036733218636 0.101289959205079 0.105444159883961 0.106226961022607 0.105031297007907 0.106403878676839 0.101687609082138 0.100607189590101 0.0995898988456303 0.101595787076691 0.0977041879522215 0.106113983726187 0.0977041879522215 0.102493643370264 0.0987024769497618 0.104309312936512 2 2 + 1121502 1121821 1121632.636 1120797 1122052 + gene protein_coding_gene FALSE TRUE AT2G03680.1 SPR1 (SPIRAL1) The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle. similar to SP1L2 [Arabidopsis thaliana] (TAIR:AT1G69230.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44613.1) 0.272989524174460 2.90154209108082 0.0145543954582180 1 2.47035939557685 20.3727737721259 0.272989524174460 0.0788537052529224
AT1G71020_at 6.37686714584477 7.2033578259084 5.17104523581044 5.232741180226 6.7687792172532 7.0083729315053 6.67466987621112 6.8606091370489 7.4157826842408 6.3041546816743 7.82406196973864 7.87511420497828 6.83929965780363 7.21926717702525 7.04247123891548 6.64947447665342 5.8753218677243 6.98449437948766 7.33732235039494 0.277822029007600 0.252126767690610 0.302365097325864 0.265951355304737 0.255590612211893 0.283891935948912 0.269508455421202 0.259992397033846 0.262868622299620 0.256597593508971 0.256298327308795 0.252126767690610 0.265154968877414 0.252126767690610 0.258748237179837 0.262004860893783 0.273691215538261 0.270430925532578 0.262597079989440 1 1 - 26794506 26795058 26794824.091 26794259 26796837 - gene protein_coding_gene FALSE TRUE AT1G71020.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G23030.1); similar to Os03g0275900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049711.1); similar to Os02g0732200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048024.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD67947.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.357019902808541 -2.90147046586891 0.0145562513466420 1 2.47024702358881 13.4409426655481 -0.357019902808541 0.152727166782789
AT1G67850_at 7.8556334162132 8.09864191750481 7.8246303313118 7.27633195647067 6.24213066568972 5.96801577024511 6.44725623144087 6.01880955260524 5.31984520130186 5.27066774014915 4.87682427784053 5.12176334571128 5.03973848022158 4.7288322095506 4.53023376475712 5.04339470149074 5.24991942419294 5.03966130698042 5.45154435052368 0.247574394664509 0.248945755756727 0.250259734963439 0.253771042860191 0.245980530292301 0.245980530292301 0.24874044958022 0.249707407219158 0.249979932477478 0.252055011841345 0.260445588177872 0.245980530292301 0.249769387976136 0.245980530292301 0.251972478216447 0.253428201249331 0.260736426931651 0.248411004271266 0.248493750542159 1 1|0 +|/ 25444343 25445537 25444871.7 25441563 25445805 + gene protein_coding_gene FALSE TRUE AT1G67850.1|AT1G67850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13000.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.335432295163390 -2.90050636772477 0.0145812553160433 1 2.46873446670063 12.1170054149359 -0.335432295163390 0.136086315848697
AT2G25950_at 6.59385833895013 6.63860893803734 4.94851604433286 6.27278273528421 7.09233537622186 5.79314619409745 6.01814952095077 5.93987857911868 3.38816800045855 5.45600342348383 6.02999613387831 6.36188288577436 6.11246953792728 5.91770943687368 6.58194421699308 5.85246131248746 6.33843386945598 6.39270032340816 5.26550409789206 0.226598259401724 0.226717255331246 0.230560401442689 0.225633287649210 0.222435966341037 0.236757396010637 0.228967874021533 0.224087550369074 0.237538916066491 0.229847277994854 0.239993763281555 0.222435966341037 0.229815461520806 0.236858371433112 0.240410666235 0.223138503946166 0.245341120272491 0.225735518901436 0.226287343527616 2 2|0 +|/ 11075845 11077262 11076574.714 11075722 11077739 + gene protein_coding_gene FALSE TRUE AT2G25950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04780.1); similar to Os01g0559000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043339.1); similar to hypothetical protein DDBDRAFT_0204321 [Dictyostelium discoideum AX4] (GB:XP_642028.1); contains InterPro domain Protein of unknown function DUF1000; (InterPro:IPR010400); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.612147891937419 2.90041572056352 0.0145836084733119 1 2.46859225250074 11.6129969101465 0.612147891937419 0.321420971024535
AT1G80760_at 6.64101178213287 7.06274991076847 8.0808797882225 8.34894604166512 7.6053263612631 7.86106121399613 9.5793409122789 9.54463355922933 8.08896855817799 8.90591211628437 9.5935370985986 8.66596403392699 9.65447934626397 9.48410423062818 8.2528333107678 9.2640881984667 9.59848729772632 9.84914178135201 8.44825806976236 0.153885731980233 0.144130481259448 0.144683745057477 0.139002136625858 0.14263845896056 0.145865396159710 0.143474023951011 0.148343627038088 0.150595197368188 0.144313351802494 0.140794786277671 0.140766405995168 0.141145598695569 0.14601700845069 0.149785010495127 0.143210042094969 0.139916242686161 0.142160158009329 0.145010145790988 1 1|0 -|/ 30355630 30356462 30356027.667 30355431 30357100 - gene protein_coding_gene FALSE TRUE AT1G80760.1 NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP5,1/NLM6/NLM8 (NOD26-like intrinsic protein 5,1), boron transporter/ water channel [Arabidopsis thaliana] (TAIR:AT4G10380.1); similar to nodulin 26-like protein [Medicago truncatula] (GB:AAT35231.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.290701237162868 2.89997640348663 0.0145950183351385 1 2.46790301965040 16.9786815263402 0.290701237162868 0.0973311308344902
AT2G45270_at 7.78019908729502 7.644704801442 7.13944324534947 7.18478503093094 7.52847693799004 7.32319234391621 8.41543590138882 7.41814001748616 7.00545872174778 6.99856459771936 6.38632989339969 6.57044622489992 6.1613397226064 6.54732015485297 7.41016017268324 7.01300479246554 6.88057411085923 7.00125396393243 7.02005821189358 0.226255170633002 0.217590300465922 0.218515068842623 0.21421150376475 0.222313447080405 0.242355101575499 0.218179290160597 0.223086520579342 0.217871581362512 0.21421150376475 0.219807009675932 0.215143267327044 0.221019051887058 0.232022850139869 0.21528107642947 0.217285398274 0.228877231211705 0.221788709470895 0.220293205340592 2 0|2 /|+ 18675582 18676347 18676017.1 18673600 18676947 + gene protein_coding_gene FALSE TRUE AT2G45270.1 glycoprotease M22 family protein similar to glycoprotease M22 family protein [Arabidopsis thaliana] (TAIR:AT4G22720.2); similar to Glycoprotease family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98521.1); contains InterPro domain Peptidase M22, glycoprotease; (InterPro:IPR000905) -0.391184555007074 -2.89929848660894 0.0146126426428793 1 2.46683945846314 14.4314625740162 -0.391184555007074 0.177931454584735
AT1G15810_at 5.23857604470154 6.05773312238012 6.08054460750925 6.21193901004802 6.58143297857948 6.29502756275634 5.65373478865434 4.98847383663286 4.5471351433811 4.46764838452193 4.39286521713262 4.49281005654103 4.61644453732203 4.33762137200109 4.59969588758983 4.35466901528098 5.15557190355984 4.46479931524966 4.60841057481418 0.211552987556985 0.206469960570771 0.206342294585148 0.213993395412535 0.209456171545641 0.214319130721364 0.210459158597268 0.207759927062034 0.208357078429747 0.205559780677171 0.205559780677171 0.206885325729316 0.212626610505509 0.208612429189912 0.209828327933398 0.206237138827998 0.218054464019437 0.210620345359031 0.206091654335631 1 1|0 +|/ 5445287 5446213 5445741.778 5444413 5446559 + gene protein_coding_gene FALSE TRUE AT1G15810.1 ribosomal protein S15 family protein similar to ribosomal protein S15 family protein [Arabidopsis thaliana] (TAIR:AT1G80620.1); similar to Os02g0803200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048424.1); similar to ribosomal protein S15-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44816.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15, bacterial chloroplast and mitochondrial type; (InterPro:IPR005290); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) 0.409175776904979 2.89919570357709 0.0146153166330038 1 2.46667820607489 10.4348699259029 0.409175776904979 0.190586775808401
AT3G29250_at 1.84771586941637 1.69670193632472 2.54162912475273 2.58122798654438 1.88361917626804 2.16639317804742 1.98325648933156 1.85247551419461 2.23800190416990 2.20434940205917 2.09416005532724 2.06962979917364 2.05393464981479 2.33287776689617 2.56816077363304 2.38392421523388 2.44462043047105 2.18937798498368 2.15726395544909 0.223269832176339 0.225133552131578 0.227639998751114 0.226473024777072 0.215662054771858 0.215102530490626 0.223140630279885 0.221399327524566 0.220553080938799 0.214469680896144 0.216694762060328 0.225666449597759 0.214469680896144 0.218214439017394 0.219477429928535 0.220833364811083 0.218698521615076 0.215912414114798 0.214756599181509 3 3 - 11195006 11195481 11195230.727 11194896 11196230 - gene protein_coding_gene FALSE TRUE AT3G29250.1 oxidoreductase similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G29260.1); similar to 3-beta-hydroxysteroid dehydrogenase [Di (GB:AAW31719.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.257696934817649 2.89876269537057 0.0146265871102127 1 2.46599887738242 4.30260614102718 0.257696934817649 0.0603060313868303
AT3G27590_at 1.89195797559633 2.25925244829216 1.49498302649166 1.97801906111919 1.93027694678864 1.55457093326562 1.83611017674752 2.11603689302400 2.23265043745992 2.54518802905259 2.04896564453081 1.96034567347315 2.53690312436323 1.79541563630768 1.87668074639731 2.00174928104660 2.00156604274808 2.35420169533997 2.56480302455022 0.260502410602481 0.259113707042194 0.259189429488037 0.267979336861529 0.256023362790408 0.262862918720113 0.255023485598877 0.273829683347609 0.252081908069324 0.253220516252165 0.252396662746828 0.251566286865827 0.258680534159416 0.255600321173347 0.251489740832850 0.254648164061556 0.253907075676526 0.256663771826011 0.271653992265732 3 3 + 10222389 10222917 10222663 10222384 10222952 + gene protein_coding_gene FALSE TRUE AT3G27590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05095.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain SUBFAMILY NOT NAMED (PTHR19446:SF21) -0.330972782330223 -2.89874230006301 0.0146271181808196 1 2.46596688008304 4.14241375477236 -0.330972782330223 0.132671318866354
AT3G49740_at 3.19683785584291 3.18062782060758 3.3298757534359 3.27199724218809 2.79993978082426 2.99402985800538 3.02452707709230 2.57723499749224 3.14745727693022 3.43438342492542 2.67271392833754 2.42869169357103 2.66066202125835 2.62448996390412 1.99999321417150 2.61895236754791 3.02768003157360 3.41014551125356 3.44215377958249 0.218296353414631 0.229999067633735 0.220668231454351 0.223086947896238 0.223511290121496 0.227066327409278 0.224561462060847 0.218296353414631 0.229497911849484 0.219999338540427 0.223235970247061 0.218296353414631 0.220835648268883 0.218296353414631 0.222989848720065 0.218296353414631 0.232257510160683 0.224834117211303 0.221631171360155 3 3 + 18460443 18460866 18460626.182 18458773 18461079 + gene protein_coding_gene FALSE TRUE AT3G49740.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02010.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.278380840752928 -2.89867004140044 0.0146289998698731 1 2.46585351669208 6.05775759081854 -0.278380840752928 0.085017909773051
AT3G49360_at 5.66855751161547 6.28528577131542 5.96956415276169 5.73549368537333 6.93260523370127 6.92318130063945 6.36848205274719 6.06745943174824 5.77278267404228 5.55977931525308 5.8282999064025 6.08528296687511 6.24595406314659 6.11415289447657 5.78243662280253 6.28311531748264 6.10449865401119 5.81918408338714 5.71157403092524 0.254373422298994 0.250254191318015 0.272321087937804 0.274264955505228 0.25759539271542 0.276989841647355 0.247544171070159 0.251258034823334 0.269605174504696 0.258736951948443 0.244135183557407 0.251405205220622 0.252689359475397 0.258767193782869 0.270736471525727 0.244142353192265 0.264704272370985 0.248240224694706 0.252367983961086 3 3 - 18314204 18314880 18314426.909 18314031 18315401 - gene protein_coding_gene FALSE TRUE AT3G49360.1 glucosamine/galactosamine-6-phosphate isomerase family protein similar to glucosamine/galactosamine-6-phosphate isomerase-related [Arabidopsis thaliana] (TAIR:AT5G24410.1); similar to putative 6-phosphogluconolactonase [Brassica carinata] (GB:AAK50346.1); contains InterPro domain 6-phosphogluconolactonase; (InterPro:IPR005900); contains InterPro domain Glucosamine/galactosamine-6-phosphate isomerase; (InterPro:IPR006148) 0.322125895714261 2.89801579341499 0.0146460482102286 1 2.46482709914411 12.1009507609777 0.322125895714261 0.125491023367115
AT3G20630_at 3.86932797983570 4.22116925795178 4.01241689963021 4.602794253158 4.75415255537507 4.60673237633381 3.83020181931791 4.38761970879971 2.46335496096146 2.22157265811357 2.02432416323930 2.27439479318666 2.73236234034611 2.54154322723763 2.77774295046975 2.59886870569039 2.51897919008911 2.50985970132608 1.89807697214855 0.245725311399357 0.229436458832201 0.228296991181029 0.227729403197721 0.232865827030135 0.226236964829933 0.229344877095677 0.227078780878513 0.225364733969670 0.225364733969670 0.229010242528998 0.228705190652200 0.229740848783062 0.229894609552442 0.227641892638185 0.228927471585259 0.228829601546012 0.226676788502655 0.227225281862999 3 3|0 -|/ 7205546 7207464 7206470.4 7202779 7208408 - gene protein_coding_gene FALSE TRUE AT3G20630.1 UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Identical to Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15) (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (AtUBP14) (TITAN-6 protein) (UBP14) [Arabidopsis Thaliana] (GB:Q8L6Y1;GB:Q9FPT0;GB:Q9LJT6); similar to PREDICTED: similar to Ubiquitin isopeptidase T isoform 2 [Canis familiaris] (GB:XP_867393.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_416513.2); similar to PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 5 (Ubiquitin thiolesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) isoform 7 [Rattus norve (GB:XP_001063371.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.359934424927464 2.89798203739402 0.0146469283623717 1 2.46477414112314 6.63134898014493 0.359934424927464 0.155247021310904
AT1G75590_at 0.760845144611205 0.884851792380047 1.01646051183521 0.681917124301464 0.842967190831168 1.09543949613327 1.19969186688306 0.793935955532032 1.15357521199560 0.98668583678478 1.64205006099090 1.63686958681947 1.33479316521389 1.35395660033654 1.83847481762258 1.51295150058254 0.940293164496063 2.08436844138565 0.706704919221835 0.209603800344031 0.205760213696074 0.219898249733860 0.209765746793993 0.212717902493199 0.210316796748246 0.217052109839921 0.206041456796547 0.209693257460723 0.206789941944736 0.208138246268322 0.207828243461797 0.210428285623079 0.21608987966539 0.216984299108858 0.212974243414450 0.227467929409231 0.207464892628709 0.213904931861036 1 1 - 28386927 28387346 28387137.455 28386557 28387429 - gene protein_coding_gene FALSE TRUE AT1G75590.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19840.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79953.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.296672951051954 2.89774574902158 0.0146530908148190 1 2.46440344129357 2.15549279690428 0.296672951051954 0.103207493404320
AT2G27660_at 5.56925563582947 4.92250506547756 5.8891202427943 5.45329641944627 3.49050214928605 3.75745382532757 2.62037871497675 2.10038588625004 3.7904232566093 3.1627252290395 2.89955172436160 3.03890046447293 3.03803911085242 3.61130188747362 3.34149193264521 3.06667549963399 3.43126871275249 3.09317778468906 2.88212441493981 0.224522884684229 0.220513719243375 0.227787578803319 0.221368856413592 0.211595139405787 0.213321282550264 0.210905152838072 0.220285217811464 0.217045585789183 0.209241227467729 0.211166711442252 0.210513556490386 0.210481866225985 0.207761580141333 0.211294377665864 0.209420003101408 0.212051983726647 0.221998165431602 0.209548232092466 2 2 - 11805837 11806318 11806075.636 11805614 11807927 - gene protein_coding_gene FALSE TRUE AT2G27660.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G44400.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21314.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.378044211497027 2.89746565285789 0.0146603991531855 1 2.46396401473045 7.45959983732668 0.378044211497027 0.168662563087817
AT3G25680_at 2.87285161206765 2.88886939942766 2.60895096031773 2.75327788779771 3.09623090270146 3.12797215705593 3.24655573263197 2.88666887105052 2.01505430945804 2.12704731561869 2.92541329525558 2.83987780014831 2.37978666550571 2.90901494776041 2.76102799538564 3.1642290454594 2.38566697146534 3.15769307844897 2.49495106548829 0.204070552564936 0.196101111858603 0.202338727230328 0.200208873282020 0.197774503082892 0.199851537388979 0.200145499289691 0.205990422250124 0.203091195692793 0.195366592551215 0.198262922733078 0.195366592551215 0.197559116817575 0.196203970916408 0.200954013377519 0.195896574500610 0.199736116171902 0.198478898119860 0.199495387792469 3 3|0 +|/ 9351544 9352460 9352063.556 9350863 9353664 + gene protein_coding_gene FALSE TRUE AT3G25680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23890.1); similar to Os06g0499000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057703.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45364.1); contains InterPro domain S-layer homology region; (InterPro:IPR001119) 0.262929700623711 2.89735722209898 0.0146632293370395 1 2.46379390428921 5.44901700127317 0.262929700623711 0.0673831599990307
AT2G20850_at 5.74227514653148 5.58707080352099 4.85735884770842 4.68480421218946 5.80550144273561 5.42876498973773 5.63268358854058 5.19476489764042 4.67397321917299 5.64398890812053 4.95426201209595 5.37854042792387 5.06330430399253 4.61469497325129 5.08946212187287 4.75036330071249 4.85248852547292 5.14019566401546 5.3972697507926 0.206518547955212 0.200862755703939 0.201669703564464 0.199311473199052 0.203932134115917 0.205371143724241 0.199311473199052 0.200646941837778 0.209188692655424 0.200642210364877 0.199311473199052 0.199311473199052 0.201876152561586 0.203575907894563 0.208760073055789 0.20085442799966 0.204042836677908 0.208854821539597 0.212847287281711 2 2|0 -|/ 8982810 8983517 8983176.375 8982429 8986460 - gene protein_coding_gene FALSE TRUE AT2G20850.1 SRF1; kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G03390.1); similar to leucine-rich repeat transmembrane protein kinase 2 [Zea mays] (GB:AAC27895.1); similar to Os02g0176100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046061.1); similar to Os02g0190500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046150.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.301543972913548 -2.89720358162662 0.0146672404917742 1 2.46355286732292 10.4760652621735 -0.301543972913548 0.107734920029846
AT1G22730_at 5.750829263954 5.64739265916504 4.9316646273536 5.10664524099608 5.23674756005312 5.1875414530327 5.38232828668928 4.61684427130022 4.87515389551867 3.99769120262203 5.85709557284491 5.61250129539622 5.27241831792709 5.45656532461698 5.49478454259425 5.74566091695509 6.0277670461194 3.68713575783629 4.5898941970716 0.196306280205739 0.204933866902068 0.201201286894482 0.199586521443167 0.192280028868987 0.200485416440610 0.192280028868987 0.196406811654971 0.199839565934045 0.197690466087304 0.199151712293346 0.198625014024395 0.196178901947997 0.200540754276602 0.209857438544040 0.196159631889402 0.196371104155459 0.212539847690291 0.192280028868987 1 1 + 8048162 8048724 8048449.364 8046138 8049028 + gene protein_coding_gene FALSE TRUE AT1G22730.1 MA3 domain-containing protein similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63190.2); similar to Os03g0222100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049417.1); similar to Putative topoisomerase [Oryza sativa (japonica cultivar-group)] (GB:AAN05329.1); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) 0.33648121589863 2.89612069003293 0.0146955432225908 1 2.46185399462008 10.1734096012465 0.33648121589863 0.137325648922572
AT1G65430_at 8.09581330399303 8.10317955378152 8.11440781085502 8.13319483501448 8.54404434302563 8.19197569593906 8.27010917876186 8.14877502949605 6.90403172189717 7.25093056223885 7.67744996748984 7.5455786413159 7.52313489076564 7.5524472285231 7.24122310543139 7.65230866562294 7.89708902095528 7.34607862378274 7.21906884354218 0.175636425855315 0.176472148206921 0.170249878969041 0.182612230688522 0.182617029351131 0.17828977903404 0.181269661016853 0.178762828335020 0.191726193503082 0.172542866911788 0.179547824033248 0.176363810483443 0.173859374839433 0.182268818314017 0.185018073966041 0.175023279649420 0.178647560777276 0.180289620814219 0.175925256381588 1 0|1 /|- 24304854 24305922 24305153.2 24304561 24309899 - gene protein_coding_gene FALSE TRUE AT1G65430.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G05890.1); similar to IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) [Arabidopsis thaliana] (TAIR:AT2G31510.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); similar to ARIADNE-like protein [Musa acuminata] (GB:AAR96008.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.260586565063442 2.89589600830707 0.0147014224206765 1 2.46150150908477 15.5397328741310 0.260586565063442 0.0645383748578773
AT2G35260_at 11.1118031703415 11.2994118085967 11.1339935091461 11.1311750323769 11.5671313817951 11.2458555905166 12.0141187000188 11.9381937483805 11.6775044363478 11.6162817466388 11.6256379091092 11.4326905524697 11.4824613862722 11.4103795344513 11.2989002747392 11.6753023611374 10.9687909082117 11.3824741624942 11.5394880625254 0.094493368959665 0.0870684276822105 0.087013868963612 0.0862627134100578 0.0874370064795108 0.0930570406347996 0.0883535903715928 0.0875766553350875 0.0978721368841394 0.0867881711306308 0.085972647763811 0.0854691864564518 0.0868471557560342 0.0893992423344667 0.085554753918498 0.085987380266033 0.112452017639133 0.0940158230158677 0.0854691864564518 2 0|2 /|+ 14857635 14858397 14858007.75 14856615 14859048 + gene protein_coding_gene FALSE TRUE AT2G35260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17840.1); similar to hypothetical protein 40.t00061 [Brassica oleracea] (GB:ABD65174.1) -0.261427378717896 -2.89520752344283 0.014719452550699 1 2.46042140324168 22.9405458932872 -0.261427378717896 0.0657124078405782
AT4G13140_at 7.31501612740197 7.38542527409158 7.30406538351453 7.20911137292967 7.7419639899256 7.01251532792322 7.98102798695371 7.45797218864215 7.30529279517858 7.41976452854836 7.0336867341806 7.08480000434409 6.74663509230399 6.6608872728068 6.77094630898526 6.88717094249991 7.0388916039125 7.38403124693371 7.64250901428788 0.172806378520041 0.171601814763402 0.173225148312642 0.179189214792136 0.171260041097552 0.178418553844194 0.175357684352801 0.175348106530489 0.187593455995141 0.175416644571229 0.171482576967135 0.167839690813354 0.167650221180881 0.194322271247072 0.179228114557429 0.171123899860089 0.191851441157684 0.181050405964729 0.168943083849248 4 4|0 -|/ 7650323 7650946 7650637.222 7650322 7651141 - gene protein_coding_gene FALSE TRUE AT4G13140.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE88839.1) -0.361460335479086 -2.8949459937366 0.0147263073357556 1 2.46001111295387 14.6292555047982 -0.361460335479086 0.156674830404071
AT4G32540_at 2.51259660700318 3.47982617380105 2.91929565265696 3.5485378074699 2.35596377770382 2.50782122800575 2.51991880173786 3.16411725391021 3.37604086309065 3.01843025363659 2.41359526794791 2.34656812469445 2.75535084151898 2.01128282655865 2.53742185882754 2.1174204435759 2.50325235849678 2.46379837761599 3.33060156055632 0.253127916086549 0.252178307841945 0.26317772824965 0.253555972521339 0.257775761921894 0.264866481664086 0.252523740355928 0.255819247689174 0.270629511432556 0.253313995758973 0.251931054244589 0.249161058090669 0.257741252615207 0.257316996841461 0.254151783386947 0.248276481955513 0.262505738099053 0.260538979446021 0.257865672739927 4 4|0 +|/ 15701704 15702837 15702250.9 15700910 15702876 + gene protein_coding_gene FALSE TRUE AT4G32540.1 YUC (YUCCA); monooxygenase/ oxidoreductase Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis similar to YUC4 (YUCCA4), monooxygenase [Arabidopsis thaliana] (TAIR:AT5G11320.1); similar to flavin monooxygenase-like protein [Solanum lycopersicum] (GB:CAJ46041.1); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Monooxygenase, FAD-binding; (InterPro:IPR002938); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.467157361338649 -2.89456745263752 0.0147362347020622 1 2.45941725566666 5.69364824020228 -0.467157361338649 0.230203754492530
AT1G16160_at 2.0953112052305 1.76480415222076 2.54293635410712 2.31868036953422 1.92648646781373 1.73078686604205 1.71447607457631 1.88951149084145 2.00013315833978 1.52434233976003 2.25228619128269 2.39202443036203 1.70169375075463 2.39212534460218 2.04211428110086 1.95223309364490 2.07610975047727 1.63999634181094 1.77989291172227 0.209383641953029 0.212223120239262 0.206808047798988 0.208182333727478 0.201172688004102 0.209528420698304 0.201726020360331 0.207026287073933 0.209480695298263 0.207441881257673 0.203579688902019 0.202107111271795 0.206375790918461 0.204420289532901 0.201980356368775 0.211427451870335 0.203782950259577 0.206389347087657 0.205210439542554 1 1 + 5537678 5538164 5537975.364 5535967 5538263 + gene protein_coding_gene FALSE TRUE AT1G16160.1 WAKL5 (WALL ASSOCIATED KINASE-LIKE 5); kinase WAK-like kinase Identical to Wall-associated receptor kinase-like 5 precursor (EC 2.7.11.-) (WAKL5) [Arabidopsis Thaliana] (GB:Q9S9M1); similar to WAKL6 (WALL ASSOCIATED KINASE-LIKE 6), kinase [Arabidopsis thaliana] (TAIR:AT1G16110.1); similar to WAKL1 (WALL ASSOCIATED KINASE-LIKE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G16120.1); similar to RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1), kinase [Arabidopsis thaliana] (TAIR:AT1G79670.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protease inhibitor I8, cysteine-rich trypsin inhibitor-like; (InterPro:IPR002919); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.275823439193719 2.89439796385687 0.0147406817770636 1 2.45915136137777 3.909971973185 0.275823439193719 0.0827160363102667
AT1G26910_at 5.26946132012467 5.50792791546623 5.12199298160646 5.26360822981318 4.89148261252064 4.84404664313069 5.3872936147254 5.70878827095228 5.11120968740615 5.1321174119846 4.95284812645839 5.90613205020298 4.92247051980858 5.05827188784722 5.89955897289115 4.74370734676182 4.50726425316726 4.72401624363318 5.31840616039442 0.220449128385220 0.20824508987964 0.216407840350719 0.207847248809640 0.205921748189477 0.205921748189477 0.216110433390924 0.217973443155243 0.207228225836768 0.213346525796965 0.223381671782485 0.211534204101406 0.209630746042952 0.210513538695287 0.213697172377169 0.213509134754802 0.225628291331882 0.216942707272462 0.219616588263903 1 1 + 9322121 9322772 9322433.545 9321637 9322952 + gene protein_coding_gene FALSE TRUE AT1G26910.1 60S ribosomal protein L10 (RPL10B) Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related [Arabidopsis thaliana] (TAIR:AT1G14320.1); similar to 60S ribosomal protein L10 (QM protein homolog) (GB:Q9SPB3); similar to Ribosomal protein L10E [Medicago truncatula] (GB:ABE79479.1); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197) -0.268022954190733 -2.89427589876132 0.0147438853752667 1 2.45895986568203 10.3875892460548 -0.268022954190733 0.0739350975081257
AT4G01070_at 8.48976662807324 8.6871180872636 9.82749136628086 9.83583623580171 9.00543801964581 8.7527830502097 10.1345738273447 10.2821997745457 8.95922721041223 9.23651277029664 10.1202053591741 9.56023811023314 10.0033601793304 9.9555337436596 8.9320135417292 9.41949159927083 9.54394159183632 9.7129765352293 9.0960900680533 0.148013402155557 0.144383136083078 0.149607941899074 0.152852096384891 0.150703443004421 0.150860158455173 0.148327153402432 0.152010621941505 0.152576736225550 0.149522914355990 0.153921802879546 0.142015021250118 0.150912290169961 0.157096117835508 0.154672425580675 0.142015021250118 0.148978312181652 0.143672559972622 0.146322296359399 4 4 - 461904 462413 462219.182 461592 463449 - gene protein_coding_gene FALSE TRUE AT4G01070.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta Identical to Probable hydroquinone glucosyltransferase (EC 2.4.1.218) (Arbutin synthase) [Arabidopsis Thaliana] (GB:Q9M156); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.257832994157433 2.89383615202485 0.0147554323181548 1 2.45826999273315 18.7535242563850 0.257832994157433 0.0610971663651727
AT1G64740_at 8.64417684686802 8.73268144268854 8.82691184180812 8.6304213361808 9.02381727230864 8.90565895539019 9.12638315799308 9.0932313234237 8.50719124453503 8.34682250526513 8.01885457511016 7.71585960299541 8.10619061722692 7.9277579165988 7.74640983113719 7.86715189623057 7.9549605069735 8.06609575401748 8.24255089779928 0.162187944399524 0.162373430536019 0.160490981759055 0.156861281543509 0.169543097017558 0.174211918814484 0.174670185540788 0.171659515525973 0.186228942966139 0.165308242389068 0.160938923596774 0.161237778285348 0.161817235746246 0.168032180992322 0.161649603866394 0.159356256444878 0.181885870292789 0.170995695260908 0.162465275208984 1 1 + 24055326 24055808 24055482.636 24053669 24056150 + gene protein_coding_gene FALSE TRUE AT1G64740.1 TUA1 (ALPHA-1 TUBULIN) alpha-tubulin expressed primarily in stamens and mature pollen Identical to Tubulin alpha-1 chain (TUBA1) [Arabidopsis Thaliana] (GB:P11139); similar to TUA3 (tubulin alpha-3) [Arabidopsis thaliana] (TAIR:AT5G19770.1); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to alpha-tubulin [Miscanthus sinensis] (GB:CAD26887.1); similar to alpha1 tubulin (GB:1503274A); similar to Tubulin alpha-6 chain (Alpha-6 tubulin) (GB:P33627); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) -0.246263651492479 -2.89358155403901 0.0147621217397845 1 2.45787058159221 17.0183760904507 -0.246263651492479 0.0429168637990996
AT3G49490_at 8.56114471568954 8.81050398148178 8.97601065973903 8.9594864895455 8.96925533254547 8.90909380076403 8.2843328948092 8.02807059043316 7.98265763026985 8.14172138062971 8.11738280415456 8.13097877568196 8.23130557192677 8.0073391423922 7.54209633200722 8.5732391317591 8.35016074325781 8.100239773907 8.31341301729599 0.162643617291243 0.156852786426427 0.158478874621259 0.15334573291078 0.157880013900206 0.153926342951996 0.155038825252633 0.159759370792501 0.157367908918287 0.160865181019266 0.155047518245455 0.162747126672524 0.149842802645615 0.155027041113637 0.162854358876535 0.152681914436227 0.154753753857294 0.152764913308962 0.163315505571995 3 3 - 18355923 18356463 18356129.727 18355729 18359684 - gene protein_coding_gene FALSE TRUE AT3G49490.1 similar to hypothetical protein MtrDRAFT_AC119415g11v1 [Medicago truncatula] (GB:ABE85164.1) 0.259055316682864 2.89334994988397 0.0147682096531983 1 2.45750724372980 16.8259990383515 0.259055316682864 0.0628126141614957
AT1G44318_at 2.09545811859647 1.87600499162777 1.66995432414434 1.98141025874653 1.20617552246395 1.34365919752118 1.95003178994752 1.90460963837852 1.7146742019618 2.24819210182773 1.70080068873591 1.96357723260005 1.59122822157596 1.62946175080361 1.76585344427449 1.51365658103157 1.90797457812245 2.04130490968029 1.70129201787342 0.237674676968608 0.232899981459645 0.237336974300075 0.233811135325032 0.236159553949316 0.238233438823315 0.236336284524387 0.237429894955473 0.237948960901911 0.239576293756385 0.237232369500743 0.238293344204418 0.233380567297228 0.237500932624081 0.237792409948643 0.232348231475633 0.241796169390721 0.244099204797547 0.239223173943330 1 0|1 /|+ 16835034 16836279 16835853.1 16833456 16836356 + gene protein_coding_gene FALSE TRUE AT1G44318.1 HEMB2; porphobilinogen synthase similar to HEMB1 [Arabidopsis thaliana] (TAIR:AT1G69740.2); similar to aminolevulinate dehydratase [Raphanus sativus] (GB:AAK15323.1); contains InterPro domain Delta-aminolevulinic acid dehydratase; (InterPro:IPR001731) -0.265023453476589 -2.89249805945423 0.0147906239951070 1 2.45617081431088 3.57955545504863 -0.265023453476589 0.0705353077089342
AT2G28170_at 1.04182943942922 1.44319021734481 1.5338783610687 1.37128292752032 1.14287441439512 1.01590168869572 1.25984870583978 1.33782195826224 1.93644780968792 1.97259485977971 1.34203727648512 1.37618634943676 1.61078171024656 1.04356989436482 1.57820845822514 1.54967596906148 1.69698303023120 1.57006464481143 2.12464586609854 0.172294121329107 0.179937504140511 0.175889117785468 0.179512349453487 0.175316115133794 0.190469095910006 0.182903250109493 0.176111619133867 0.190034169608376 0.185257476255528 0.176162595684965 0.177787215417732 0.177009102739456 0.182821528970185 0.180422352385711 0.1766919548417 0.18915463320558 0.174436986634980 0.171872263682894 2 2|0 -|/ 12013464 12014212 12013917.3 12013448 12016093 - gene protein_coding_gene FALSE TRUE AT2G28170.1 ATCHX7 (cation/hydrogen exchanger 7); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX6a (CATION/H+ EXCHANGER 6A), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G08140.1); similar to Na+/H+ antiporter-like protein, putative [Medicago truncatula] (GB:ABE89964.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.272489663773313 -2.89244431496223 0.0147920392260035 1 2.45608650130965 3.00941242830109 -0.272489663773313 0.0792525462522016
AT1G19140_at 5.09172108702055 5.69880275135264 5.52324040917983 5.52657756394933 5.45710545337509 5.51041054467168 7.17798978551744 7.08474645042798 4.87127190116865 5.75532314039731 4.9797965070555 5.50437026556468 5.50998135243902 5.59642498151555 5.72347865335346 6.07560712063924 5.45137183208052 5.59952537357641 5.5604089083387 0.211911386242099 0.212487454973941 0.209202737736754 0.213375099938882 0.20807634480858 0.218708836473449 0.213149073680679 0.227905350156836 0.220057216052089 0.213329197376890 0.20807634480858 0.20807634480858 0.210781081421738 0.211505644253167 0.212788720468890 0.209113232344488 0.222094547190500 0.20807634480858 0.20807634480858 1 1|0 -|/ 6611017 6611953 6611577.5 6610712 6612507 - gene protein_coding_gene FALSE TRUE AT1G19140.1|AT1G19140.2 similar to PREDICTED: similar to Coenzyme Q9 homolog (yeast) [Gallus gallus] (GB:XP_414002.1); similar to Os03g0405100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050328.1); contains InterPro domain RpsU-divergently transcribed; (InterPro:IPR012762); contains InterPro domain COQ9; (InterPro:IPR013718) -0.299789999154584 -2.89134973641776 0.0148208918653486 1 2.45436936276661 11.3591930027266 -0.299789999154584 0.106691398273459
AT4G28100_at 4.64333915558687 5.41700132735072 4.56783932808609 4.45013352622756 4.43115123496053 4.704908759712 4.88772470289731 5.67183098360200 4.84002557409301 4.331777158732 4.47932955374217 4.65616163807701 4.78533857789236 4.33808908162956 4.34372837512277 4.7825407163427 3.93435479873972 4.24399867160909 4.82178398149983 0.228688595023397 0.215871821570576 0.226181566019004 0.218592768372821 0.215567780798129 0.225896457076659 0.227487803977386 0.228747929282369 0.229129447002531 0.225936554751738 0.21924933495438 0.225768135182697 0.216140033184868 0.220299361064574 0.225444208794831 0.215567780798129 0.245095362292986 0.216138179628731 0.216390892035935 4 4 - 13965319 13966298 13965855 13965114 13966866 - gene protein_coding_gene FALSE TRUE AT4G28100.1 Identical to Uncharacterized GPI-anchored protein At4g28100 precursor [Arabidopsis Thaliana] (GB:Q9SUC9;GB:Q8L9X7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18050.1); similar to hypothetical protein MtrDRAFT_AC139526g8v1 [Medicago truncatula] (GB:ABE80139.1); similar to Os07g0557700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059970.1) -0.417776029121601 -2.88968691536611 0.0148648311747549 1 2.45176081615656 9.40172691801257 -0.417776029121601 0.197477563444012
AT4G14890_at 8.62029055482756 9.2425880927765 8.25718732675671 8.33537625283828 8.5598259465014 8.52852423900827 9.0082739320864 9.56039661897766 9.66473210329032 9.2714813277106 9.38352469769924 9.75357927253182 9.30352848770714 9.50312918889255 9.77529490197384 9.61657998893526 8.76602126425767 9.07166378123 9.26138085528705 0.120955625288045 0.126966256883644 0.128226250439216 0.128948741270703 0.126082663974599 0.131097680040427 0.125178665406909 0.122114726953893 0.135164181499146 0.118940064802636 0.124559305273757 0.125643482142194 0.12144728788264 0.123680673309590 0.12680158752915 0.122467375018180 0.128997742872354 0.122904994866220 0.121407194824432 4 4 + 8520898 8521260 8521117.091 8520827 8521448 + gene protein_coding_gene FALSE TRUE AT4G14890.1 ferredoxin family protein similar to ATFD3 (FERREDOXIN 3), electron carrier [Arabidopsis thaliana] (TAIR:AT2G27510.1); similar to 2Fe-2S ferredoxin, iron-sulfur binding site [Medicago truncatula] (GB:ABE82976.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.345095877958373 -2.88952364342201 0.0148691526003395 1 2.45150468578881 18.1619895171380 -0.345095877958373 0.144703813964795
AT2G32760_at 5.91429189665925 5.627312944815 5.73001169053367 5.69449551298369 5.99554615426572 5.84840237662061 5.89045870217277 5.55018295304579 4.57193146655151 4.53347909676559 4.82542625448714 5.17296706148922 5.07995307556304 5.62933597464105 5.2524973950398 5.34977473561203 4.66077941927116 5.02148583582341 4.83685900769278 0.226442658061988 0.219322310702444 0.235734642061498 0.226001151667551 0.221080813125543 0.25114139260914 0.224413476843596 0.225287452026303 0.234424266049678 0.221266016325379 0.219322310702444 0.225152120580737 0.219322310702444 0.224369550647910 0.225304830945864 0.219322310702444 0.230385588527764 0.228793692045462 0.226055042273304 2 2|0 +|/ 13900630 13901449 13901075.556 13898868 13901801 + gene protein_coding_gene FALSE TRUE AT2G32760.1|AT2G32760.2 similar to At2g32760/F24L7.10 [Medicago truncatula] (GB:ABE83602.1); contains domain FAMILY NOT NAMED (PTHR15157); contains domain SUBFAMILY NOT NAMED (PTHR15157:SF2) 0.274078294040977 2.88908047792201 0.0148808885035016 1 2.45080947860676 10.6670631085508 0.274078294040977 0.0813646264469231
AT4G33660_at 8.83299976855776 8.90692402020168 8.9114071705538 8.85946361073446 9.03330069865216 8.80111862435481 9.62995840193753 9.83778850062952 9.4244627002895 9.70676455391516 9.3842367614302 9.47401938444862 9.6989184877112 9.45801163268798 9.15006079133887 9.6268105289496 9.59320244915776 9.53130421499709 9.65884644554658 0.0907221565281702 0.0878852841148631 0.0919493977579152 0.0908935691501079 0.0907801475049939 0.0963760708632495 0.092609109168516 0.0879301325039214 0.103178983996784 0.0900253230048766 0.0876897247045423 0.0855977337391988 0.0906620127926438 0.0912818474856814 0.0905391457332787 0.0876396598699702 0.0954935600749251 0.0923794004372132 0.092138993291595 4 4|0 -|/ 16167475 16167799 16167626.5 16167292 16167954 - gene protein_coding_gene FALSE TRUE AT4G33660.1 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT2G41420.1); similar to adhesive/proline-rich protein homolog [Pinus taeda] (GB:AAF75822.1) -0.253857924334029 -2.88830051199069 0.0149015661151640 1 2.44958592924091 18.644750981748 -0.253857924334029 0.0561467833157356
AT2G46420_at 6.32418666485459 6.66521535829343 7.08783655461064 7.37306260571912 7.15610618518726 6.8484987177385 6.07306728881716 6.20072712535141 5.72888834127285 5.07823495020049 5.24243001428626 5.10074525382845 4.7063439577651 5.5443748081877 4.67901503658799 5.06792322172582 5.15748911246595 5.17675739311375 5.11797997818578 0.205936164552118 0.208280354550267 0.210728756100898 0.210085530124650 0.206553280489971 0.212954456550032 0.204494378962898 0.210640856687991 0.212952164451891 0.206610903115636 0.206670855963518 0.206611530454110 0.208644892520755 0.208178061161698 0.208891009077509 0.207762759484231 0.211423374976266 0.219362974241895 0.204494378962898 2 2 + 19062976 19063866 19063386.364 19060759 19064169 + gene protein_coding_gene FALSE TRUE AT2G46420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61700.1); similar to uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum] (GB:AAU93592.2); contains InterPro domain Conserved hypothetical protein 1589, plant; (InterPro:IPR006476) 0.288296999838412 2.88828607447597 0.0149019491383719 1 2.44956328088371 11.9124638657206 0.288296999838412 0.0961308700736348
AT4G39710_at 8.64233533909069 8.70211096643721 7.9112765188654 7.99891957674248 8.93040362009256 8.12253974318087 9.39160629216833 9.1413667592303 8.69424892191691 8.82391845598578 8.39506978518492 9.01380455437159 8.37405553729953 8.67247556370426 9.04913465926955 9.29408179777514 8.75374062648867 8.63741342317717 8.70858259364246 0.143865315995705 0.145466469149276 0.153158591909002 0.152289649606749 0.148041306796690 0.165881707201018 0.146509143352118 0.149449460498374 0.164380043014512 0.146527089456573 0.149445471602065 0.148667822843218 0.150825243285288 0.142832289913658 0.149235960610922 0.143459775582256 0.149206752916750 0.151493688237117 0.145923366246020 4 4|0 -|/ 18427301 18428185 18427896.889 18427033 18428353 - gene protein_coding_gene FALSE TRUE AT4G39710.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (FKBP23I) [Arabidopsis Thaliana] (GB:Q9SCY3;GB:O65658;GB:Q941D9); similar to FK506-binding protein 1 (FKBP13) [Arabidopsis thaliana] (TAIR:AT5G45680.1); similar to Os06g0663800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058294.1); similar to Os02g0751600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048136.1); similar to Chain A, Crystal Structure Of Atfkbp13 (GB:1U79); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.348548985808748 -2.88813281846286 0.0149060155859487 1 2.44932286594483 17.3630558439379 -0.348548985808748 0.147504947258570
AT1G16720_at 11.0563970896860 11.0947917403401 11.2898451919161 11.2269667411728 11.3829845206659 11.1519411185508 11.9519265426763 11.9378862351333 12.2636424373529 12.0259412937456 11.9908395265824 11.7300409990933 11.8909556426906 11.9880236497360 11.6665463537557 11.9890461036318 11.6002044058846 11.9609941291645 11.9965933948720 0.0660401608492709 0.0609463731713433 0.0609463731713433 0.0628445956172686 0.0617577293816206 0.064580786003506 0.0617091429420256 0.0659562284871862 0.0651728148435252 0.0609463731713433 0.0609463731713433 0.0609463731713433 0.0609463731713433 0.061965348296883 0.0637328725665849 0.0629668367700216 0.0745839664625371 0.0625183197933721 0.0623765984248181 1 1|0 +|/ 5724890 5726205 5725451.111 5723081 5726471 + gene protein_coding_gene FALSE TRUE AT1G16720.1 oxidoreductase/ transcriptional repressor similar to transcriptional repressor [Arabidopsis thaliana] (TAIR:AT4G18810.1); similar to Os06g0704700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058511.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72612.1); similar to hypothetical protein MtrDRAFT_AC144538g9v2 [Medicago truncatula] (GB:ABE91079.1); contains InterPro domain NmrA-like; (InterPro:IPR008030); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) -0.245313516444309 -2.88790067455037 0.0149121773398596 1 2.4489586990641 23.3603292608381 -0.245313516444309 0.042036980731706
AT4G39230_at 2.31707070434084 2.56588651831790 2.86130465351862 3.22167685031369 2.29467288424227 2.93254500921263 2.67613376782292 2.37488457283021 2.27772451268673 1.94885375923855 2.00334011475088 3.05998313521673 2.29424261241254 2.70141083295137 2.23465841491493 2.19254630418592 2.44191403542823 2.61105080104142 2.0731216684041 0.201366141479833 0.183604724279296 0.191559732440813 0.184334237808833 0.188003526095254 0.189143832977997 0.182832288420517 0.194063290994146 0.178337939502009 0.187671750530103 0.181433149109668 0.180883936012517 0.181642027776895 0.183026675352746 0.188987624739296 0.178337939502009 0.185483622790034 0.183772403221782 0.184943091385575 4 4|0 -|/ 18266131 18266870 18266554.556 18265879 18267823 - gene protein_coding_gene FALSE TRUE AT4G39230.1 isoflavone reductase, putative encodes a protein whose sequence is similar to phenylcoumaran benzylic ether reductase (PCBER), which catalyzes NADPH-dependent reduction of 8-5' linked lignans such as dehydrodiconiferyl alcohol to give isodihydrodehydrodiconiferyl alcohol. similar to isoflavone reductase, putative [Arabidopsis thaliana] (TAIR:AT1G75280.1); similar to isoflavone reductase related protein [Pyrus communis] (GB:AAC24001.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) 0.343274629873399 2.88518162529221 0.0149845389917019 1 2.44469335420484 4.92666850081116 0.343274629873399 0.143688461286731
AT2G27870_at 1.46832465193536 1.39563798968010 1.59549148708002 1.78352661917688 1.02657022533982 1.31432285271605 1.18739363793008 1.33217669213485 2.20911734468867 1.48127319316298 0.745720571302764 1.15748717050099 0.848557142928513 1.07308823843621 1.19350212132262 1.20570862124144 1.31920896668744 1.16777027897199 1.39180233379151 0.295479960606207 0.321732292481499 0.295479960606207 0.324487768511019 0.295479960606207 0.314122217016996 0.295479960606207 0.297122055000695 0.315110935431229 0.304352697408805 0.312211956261983 0.305970109296616 0.352057418970574 0.295479960606207 0.298066610528971 0.304069348054015 0.298540611711142 0.312612118389397 0.308963098232547 2 2 - 11874338 11874896 11874613.8 11874328 11875272 - gene protein_coding_gene FALSE TRUE AT2G27870.1 nucleic acid binding / ribonuclease H similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G22350.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.260544674232816 -2.88501008111683 0.0149891160593364 1 2.44442425834888 2.77940285923500 -0.260544674232816 0.065761744334339
AT4G14440_at 8.750760311746 8.90037061227935 8.98191491960955 9.03580756760183 10.0277205175138 10.2244342740223 9.79404069490255 9.99276680283483 10.4730516115641 10.2535464086944 10.9906003045375 11.0470279767382 10.4547208847391 10.6808520187791 10.8448041363953 9.97361840553232 9.86892701626261 10.4832568554148 10.0068984070277 0.0817099092735543 0.080102576085163 0.0800666956130207 0.08162505690452 0.0835918936964382 0.0848603530036677 0.0826156772343852 0.080182928224241 0.0831593420336281 0.0810776438930494 0.080484498007459 0.0798985907456666 0.0825844738813833 0.0798255273121817 0.0808089168146708 0.080147598061945 0.0875361903266618 0.083141427035508 0.0842745661332085 4 4 - 8306947 8307495 8307260.273 8306741 8307749 - gene protein_coding_gene FALSE TRUE AT4G14440.1 enoyl-CoA hydratase/isomerase family protein similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.253230927475314 2.88484619634634 0.0149934900711845 1 2.44416717797757 19.8572143420114 0.253230927475314 0.055667687654273
AT1G07615_at 2.38737236598223 2.07121852404066 2.24127470505910 2.24081109935899 2.12750524724419 2.25898284710746 2.85979303654628 2.15621877590572 2.60998703691032 2.50134725389110 2.66092857537999 1.84846472113365 1.89700502786198 1.89384477030213 2.51261683909518 1.84726574018573 1.65581546961335 2.05561118549167 2.56911650917854 0.211799358024109 0.206031674859749 0.210063019282491 0.201302597339074 0.203788311743405 0.207318418780775 0.213576153466790 0.203621802962489 0.207913256548816 0.203758174918363 0.204499480527759 0.202327443978889 0.208201221714613 0.209465348851658 0.207155883498935 0.200531262041147 0.202214491059512 0.201060831157532 0.206592381279062 1 1 - 2342376 2342836 2342639.091 2342195 2344268 - gene protein_coding_gene FALSE TRUE AT1G07615.1 GTP binding similar to GTP1/OBG family protein [Arabidopsis thaliana] (TAIR:AT5G18570.1); similar to Os11g0704300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068543.1); similar to F22G5.1-related [Oryza sativa (japonica cultivar-group)] (GB:AAX95356.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP1/OBG subdomain; (InterPro:IPR006169) -0.33260671322666 -2.88336116369919 0.0150331833111665 1 2.44183767756553 4.59619422905205 -0.33260671322666 0.135409780382984
AT1G25400_at 4.09706406876096 3.69888403097651 3.86001342960432 3.81158162788136 3.25824340605753 2.96289024448721 1.95201705655645 2.24658914699565 2.42017136287296 2.34605822414139 2.48075534857446 2.12313735650384 2.6105608461078 2.54187882077777 2.52673752849136 1.95904517195433 2.61719571247870 2.60296180321447 2.20404974084798 0.242937470376579 0.269576772100031 0.243630482408858 0.236294318664624 0.235197057715594 0.231365725273342 0.224673719940596 0.247904343834559 0.235684377995651 0.230564325952379 0.235855247995734 0.225292371165105 0.233619943612162 0.235970341278214 0.230915502963411 0.224466998483072 0.231044168216675 0.228146688677631 0.225960529822436 1 1 - 8911450 8912011 8911741.636 8911117 8912385 - gene protein_coding_gene FALSE TRUE AT1G25400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68440.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93249.1) 0.291950616038637 2.88325491239764 0.0150360273229561 1 2.44167100749776 5.61401563448181 0.291950616038637 0.100147556069232
AT2G22720_at 7.6263095319859 7.6344438651841 7.86714699404276 7.65630578916911 8.43717584565178 7.85688001496406 7.88975132369127 7.49148572565942 7.33510633883295 7.61522370112199 8.37300070084393 8.0974518961258 8.02354510616317 8.1392037730115 8.0833473519438 8.28518395402589 7.4153985573557 7.52407127644937 7.9744131176318 0.166483045288734 0.164479705737763 0.167109875955527 0.170317773657138 0.164411579146720 0.174892188223538 0.164411579146720 0.171515038943944 0.180376145061497 0.171149042076938 0.164411579146720 0.164411579146720 0.169252086399016 0.182577916649445 0.165873247082978 0.167066806793314 0.176934707893067 0.174260445987346 0.172105978426083 2 2|0 +|/ 9666778 9667345 9666978.6 9664424 9667856 + gene protein_coding_gene FALSE TRUE AT2G22720.1|AT2G22720.2|AT2G22720.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37860.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96797.1); similar to conserved hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95431.1); similar to Os11g0296800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067723.1); contains InterPro domain Chromatin SPT2; (InterPro:IPR013256) 0.322474411893868 2.88318169780386 0.015037987360281 1 2.44155616024273 15.6245530760530 0.322474411893868 0.127154429212932
AT3G26510_at 9.21703258899119 9.95818794578413 10.3643042734329 10.6356518869149 10.2118241973620 10.3313303131957 9.71506377815535 10.1017138231716 9.71229412399615 10.1158881164414 10.0239562564421 9.60231465244985 10.3835274250758 10.0988040436823 9.23485969947303 10.8245735432645 10.7080835722180 9.91741402338935 10.2484674952924 0.119939777945456 0.115970703157792 0.121824400325677 0.118829006824573 0.117634813854751 0.127021769955652 0.116187026440104 0.118056910335856 0.128504821469035 0.119183518376217 0.121242085869336 0.118301906857065 0.116999628481621 0.122866523878731 0.122911153518076 0.113442775103878 0.121574186354183 0.116879181832269 0.114227868490896 3 3|0 -|/ 9713125 9713798 9713453.5 9711574 9713897 - gene protein_coding_gene FALSE TRUE AT3G26510.1|AT3G26510.2|AT3G26510.3|AT3G26510.4|AT3G26510.5 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70640.1); similar to PB1 domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96259.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.355709936895098 2.88261048910600 0.0150532880587198 1 2.44066014300229 20.1292593828306 0.355709936895098 0.153494780819389
AT4G17260_at 6.04312104572573 6.32353931069328 5.51410253870592 6.01481521627252 6.12869197026966 6.08912507114416 6.43415118777494 6.19999995501581 4.77738824313755 4.69179898104287 5.01985240451234 5.82175694649703 5.1458221079169 5.37732180711673 6.49932809705844 4.58335177138054 5.50471871089994 5.5340091905915 4.09910379010504 0.169767921065355 0.176551711725308 0.173492919068528 0.162482616375375 0.162841664293684 0.185427683546605 0.173786738504239 0.168214451261765 0.168937825063646 0.167997656304905 0.169521352865936 0.164291715313092 0.162482616375375 0.167306286873239 0.170298498797793 0.166094309778642 0.168896630255107 0.162482616375375 0.175320977651256 4 4 + 9674562 9675086 9674824.364 9674004 9675461 + gene protein_coding_gene FALSE TRUE AT4G17260.1 L-lactate dehydrogenase, putative similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557) 0.299743641181908 2.88258306264295 0.015054023110989 1 2.4406171210568 11.0727101874128 0.299743641181908 0.107480729538437
AT1G66030_at 1.36898764591503 1.26971547259855 0.956884740875913 0.88846466967579 0.92199593180275 1.15133564610738 1.22286851702920 1.00391825755798 1.61258971778979 1.47781311999718 1.08238771185293 1.04044965161814 0.888750873446874 1.58242306174608 1.53838964541556 1.24430528043170 1.52343101335526 1.09013098616138 1.47645313035556 0.197825343988447 0.197658473647631 0.203528175456856 0.204230165819963 0.194105373416618 0.197421024747846 0.194598795218776 0.199331626830766 0.199520184365448 0.194105373416618 0.198186313262253 0.201235359436183 0.197347836574777 0.198193583277324 0.194105373416618 0.197536921315860 0.203345684107373 0.198589436603225 0.195848165151235 1 1 + 24586847 24587276 24587033.455 24586812 24587315 + gene protein_coding_gene FALSE TRUE AT1G66030.1 CYP96A14P (cytochrome P450, family 96, subfamily A, polypeptide 14 pseudogene); heme binding / iron ion binding / monooxygenase encodes a protein with cytochrome P450 domain similar to CYP96A8 (cytochrome P450, family 96, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G47620.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.25510201043521 -2.88238182384758 0.0150594175805285 1 2.44030145241079 2.48355578555416 -0.25510201043521 0.0587041088276008
AT2G40730_at 4.98551282842318 4.3812958809637 4.86849402367466 4.86310487473414 6.19035956315355 4.99776794050306 6.08247355582259 4.78313777440617 3.10050923422949 2.9549625835723 4.14270687989902 4.1599834611083 4.09245170811748 4.12792491754010 4.10314172795567 4.11177576868951 4.03038833492653 3.57952028010683 2.92940467065825 0.262171801779008 0.253751509761548 0.264036541659969 0.259442097179109 0.263689015375549 0.275852351394169 0.261504281354855 0.256735633606792 0.270068551904912 0.260661646609704 0.270552812734352 0.253292510121763 0.260404502857129 0.265249865001438 0.264596491007542 0.256170476327393 0.269972361204248 0.268338143733224 0.257896524824265 2 2|0 -|/ 16998019 16999651 16998953.25 16996914 17003376 - gene protein_coding_gene FALSE TRUE AT2G40730.1 HEAT repeat-containing protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71410.1); similar to putative kinase-like protein splice variant 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD73565.1); similar to Os01g0819900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044644.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain HEAT; (InterPro:IPR000357) 0.610177197959344 2.88185112928082 0.0150736528383148 1 2.439468993583 8.66324103734993 0.610177197959344 0.322627709124297
AT1G67730_at 8.98700105926457 9.08507655903871 8.93532962801681 9.0995650913973 9.57955535198202 9.58229514064706 9.2376881159552 9.51598256841903 9.71857252117876 9.32952420682028 10.1601220534673 10.0382415024412 9.97951891794604 10.0695354481349 10.0968279866207 9.69679004943842 9.24084425385051 9.78203110639836 9.34991447312184 0.108203336858873 0.107247202328387 0.111600854908918 0.115436241320253 0.106336384579550 0.115496593929313 0.107377474795609 0.110283044283782 0.116039755997038 0.107685369171339 0.104198658442976 0.108151333967437 0.103291105534447 0.113841386477875 0.107162155260992 0.105018747488849 0.118185460778222 0.107171237543531 0.10857270395952 1 1|0 +|/ 25395845 25396967 25396594 25395123 25397273 + gene protein_coding_gene FALSE TRUE AT1G67730.1 b-keto acyl reductase, putative (GLOSSY8) similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT1G24470.1); similar to putative 3-ketoacyl-CoA reductase 1 [Brassica napus] (GB:AAO43448.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.254867204210817 2.88180489267156 0.0150748937195893 1 2.43939646606416 18.9273080135872 0.254867204210817 0.0584421254346118
AT1G24020_at 3.89545630284932 3.61614095822574 2.62941278004409 2.39499302378005 1.962851258136 2.9073172780096 3.60651206812894 4.22693482350064 3.19112496910197 4.75311676309127 4.11775385081893 5.84314578531118 3.63309246029238 4.62819467550448 5.73034518608239 4.5989391811014 2.90873173330122 4.35611125980345 3.96804101916084 0.234994866442121 0.232054959631228 0.237869721181277 0.237035647533844 0.236944410237238 0.237328168588611 0.237413424447214 0.234760183364272 0.238514230700315 0.237274775327172 0.234240458196217 0.237386473562125 0.234332838640324 0.235997244593118 0.237457589335063 0.232054959631228 0.235678868352598 0.237567947580955 0.234167937375644 1 1 - 8500693 8501419 8501075.909 8500461 8501509 - gene protein_coding_gene FALSE TRUE AT1G24020.1 Bet v I allergen family protein Identical to MLP-like protein 423 (MLP423) [Arabidopsis Thaliana] (GB:Q93VR4;GB:Q8L9L8;GB:Q9LR93); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to Bet v I allergen [Medicago truncatula] (GB:ABE83209.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.428169551887411 -2.88096436569525 0.0150974693342843 1 2.43807800739566 7.37885240340678 -0.428169551887411 0.205484479799682
AT2G31450_at 5.46610231953016 5.05295219457214 5.31085802382524 5.10352718661588 5.30728345265353 5.17317805720866 6.37569257830681 5.96183412068631 4.93192545755229 5.10340160413939 5.15520825297811 5.03982040992703 5.00293130833745 5.0346206574485 5.06456274327425 5.41799219338598 4.66734825405274 4.9672279528426 5.43734823479959 0.214302623579347 0.210541791880806 0.21051283130224 0.218237427372051 0.204348465431348 0.209095623957622 0.20217023556997 0.209822093287188 0.222980284280290 0.211064120796756 0.207612140783398 0.200719957018749 0.204333630747721 0.203197514881437 0.205647040889209 0.200719957018749 0.213813833793181 0.210168208569297 0.200719957018749 2 0|2 /|- 13408457 13409396 13408917.625 13408209 13411299 - gene protein_coding_gene FALSE TRUE AT2G31450.1|AT2G31450.2 endonuclease-related|DNA binding / endonuclease/ iron ion binding similar to endonuclease-related [Arabidopsis thaliana] (TAIR:AT1G05900.2); similar to Endonuclease III-like protein 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92590.2); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain Endonuclease III, FCL; (InterPro:IPR004035); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.302139041915475 -2.88050319614994 0.015109870226568 1 2.43735461729848 10.5695646935221 -0.302139041915475 0.109851166963738
AT4G10200_at 1.51291010326934 1.51570258746515 1.36205357919904 1.38011848967241 0.826950586924992 1.39033875870512 0.935020994279055 1.69310899496151 2.24220242631283 2.19841622534983 1.65043222738150 1.65700183904386 1.31546805354804 1.50999944476695 1.36206725133710 1.74961408238907 1.51915203096493 1.92284248741885 2.00647245054314 0.180219937320816 0.179845293275545 0.177346949137025 0.182063365135975 0.178729304971990 0.177558069881781 0.184035697206959 0.177061398235684 0.185269550765977 0.191148383221499 0.180943159366264 0.179252909299902 0.179426407306249 0.183578691290256 0.177046210361056 0.178973368294888 0.182878229912558 0.192647813172749 0.191490403611576 4 4 + 6354986 6355550 6355322.909 6353168 6355587 + gene protein_coding_gene FALSE TRUE AT4G10200.1 hAT dimerisation domain-containing protein / transposase-related similar to hAT dimerisation domain-containing protein / transposase-related [Arabidopsis thaliana] (TAIR:AT2G16040.1); similar to hAT family dimerisation domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98982.1); contains InterPro domain Zinc finger, TTF-type; (InterPro:IPR006580); contains InterPro domain HAT dimerisation; (InterPro:IPR008906) -0.368764253332009 -2.88035088078511 0.0151139682434560 1 2.43711569632964 3.19445178406369 -0.368764253332009 0.163482881367998
AT1G16910_at 2.54299970408680 2.49150084921974 2.3573213661989 2.17832000572292 2.09079340699631 2.22202055114443 2.47149046835845 2.32343497716811 2.83667042465565 3.1333381431837 2.90239666782547 2.38941267065975 2.29039511210892 2.61023210243776 2.64303223250462 2.49019165193028 2.70816050115906 2.68953206844328 2.54944070397241 0.209390490887461 0.210491331180192 0.207169080622367 0.212631533799374 0.214694265092676 0.216810839303640 0.209302916755385 0.210638587546825 0.21585370294627 0.209614440824604 0.212796563424105 0.207169080622367 0.210842708727343 0.207169080622367 0.207169080622367 0.210911612953103 0.213544641793158 0.218835469392882 0.207984588203964 1 1 + 5785400 5785810 5785567.364 5784996 5785920 + gene protein_coding_gene FALSE TRUE AT1G16910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78815.1); similar to Protein of unknown function DUF640 [Medicago truncatula] (GB:ABE92798.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) -0.247319982623122 -2.87913442637162 0.0151467367260864 1 2.43520758694049 5.0498529410224 -0.247319982623122 0.0470233216125735
AT4G24190_at 12.2731410260898 12.3566585714777 12.5921609861562 12.6343573176742 11.8283680408967 11.7389050036588 10.7374546976625 10.7125310959687 10.9816173933492 10.7016528029151 10.5768333290108 10.962320009893 10.4730706812967 10.5121703973925 10.8985148395018 10.5403206966808 10.3231581361612 10.7492951120814 10.8207468151430 0.0720391231316985 0.0710265083721192 0.0748646736882353 0.0738382948917697 0.0710265083721192 0.075790710261132 0.0740300381726028 0.0761781607514933 0.0830462079134875 0.0713529776845936 0.0720017377766047 0.0723156050347294 0.0722602803758294 0.0783724529878185 0.075887353972997 0.0722353225326566 0.0775862268441318 0.0723922913372178 0.0710265083721192 4 4 - 12551940 12552445 12552188.182 12551727 12555919 - gene protein_coding_gene FALSE TRUE AT4G24190.1|AT4G24190.2 SHD (SHEPHERD); ATP binding encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. Identical to Endoplasmin homolog precursor (GRP94 homolog) (Protein SHEPHERD) (HSP90-like protein 7) (SHD) [Arabidopsis Thaliana] (GB:Q9STX5;GB:O22972;GB:Q56Y38;GB:Q8VY71); similar to heat shock protein 81-4 (HSP81-4) [Arabidopsis thaliana] (TAIR:AT5G56000.1); similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8), ATP binding [Arabidopsis thaliana] (TAIR:AT5G56030.1); similar to Endoplasmin homolog precursor (GRP94 homolog) (GB:P35016); similar to heat shock protein 90 [Oryza sativa] (GB:AAL79732.1); similar to Grp94 [Xerophyta viscosa] (GB:AAN34791.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594)|Identical to Endoplasmin homolog precursor (GRP94 homolog) (Protein SHEPHERD) (HSP90-like protein 7) (SHD) [Arabidopsis Thaliana] (GB:Q9STX5;GB:O22972;GB:Q56Y38;GB:Q8VY71); similar to heat shock protein 81-4 (HSP81-4) [Arabidopsis thaliana] (TAIR:AT5G56000.1); similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8), ATP binding [Arabidopsis thaliana] (TAIR:AT5G56030.1); similar to Endoplasmin homolog precursor (GRP94 homolog) (GB:P35016); similar to heat shock protein 90 [Oryza sativa] (GB:AAL79732.1); similar to Grp94 [Xerophyta viscosa] (GB:AAN34791.1); contains InterPro domain Penicillin-binding protein, transpeptidase fold; (InterPro:IPR012338); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) 0.236644776206664 2.87876252490128 0.0151567691011855 1 2.43462423362108 22.5912634611421 0.236644776206664 0.0228147039429565
AT1G13270_at 8.69580654580492 8.53696306397611 8.026807087427 8.15359426252546 9.11536078423557 8.41589053336356 7.44456142157303 6.8734147660747 6.30494742425183 6.60073199861228 5.78523985164199 6.15788722322713 6.5379737086748 6.88947785863186 6.85179293240634 5.90461478458318 6.768222776964 6.26720622045435 5.71746460197666 0.232581198078867 0.227681162817374 0.229803335053174 0.236170613528183 0.229746031488454 0.231232015197675 0.232231489541357 0.233086060387019 0.238470522702682 0.226189686237765 0.227578781472075 0.226238022394480 0.227460061393886 0.226709740713996 0.234239067647536 0.228735182436368 0.240986111591238 0.237023963559476 0.230233399496909 1 1|0 +|/ 4545900 4547095 4546623.9 4544950 4547309 + gene protein_coding_gene FALSE TRUE AT1G13270.1|AT1G13270.2 MAP1C (METHIONINE AMINOPEPTIDASE 1B); metalloexopeptidase Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C. Identical to Methionine aminopeptidase 1B, chloroplast precursor (EC 3.4.11.18) (MetAP 1B) (MAP 1B) (Peptidase M 1B) (MAP1B) [Arabidopsis Thaliana] (GB:Q9FV52;GB:Q9FX70); similar to MAP1B (METHIONINE AMINOPEPTIDASE 1C), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT3G25740.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to Putative Xaa-Pro aminopeptidase (ISS) [Ostreococcus tauri] (GB:CAL55082.1); similar to OSJNBa0085I10.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03566.2); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467)|Identical to Methionine aminopeptidase 1B, chloroplast precursor (EC 3.4.11.18) (MetAP 1B) (MAP 1B) (Peptidase M 1B) (MAP1B) [Arabidopsis Thaliana] (GB:Q9FV52;GB:Q9FX70); similar to MAP1B (METHIONINE AMINOPEPTIDASE 1C), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT3G25740.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to OSJNBa0085I10.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03566.2); similar to hypothetical protein DDBDRAFT_0206394 [Dictyostelium discoideum AX4] (GB:XP_641258.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) 0.363906981078371 2.87707948824470 0.0152022538494679 1 2.43198430273482 14.4593081053825 0.363906981078371 0.160182950371519
AT2G36835_at 9.89022294621592 9.7850236924549 9.86767719990668 9.86834773933238 9.46638674135423 9.39712698555967 10.1615422431087 10.3192687339627 9.3612782162144 9.7626264248057 9.13657845249608 9.39617274310505 9.4280551583464 9.4903735317215 9.70572560160236 9.36884747302986 9.53344201432192 9.11335646447862 9.34369092553045 0.0996278562265838 0.0995061498168219 0.103746818303292 0.100103349524199 0.103325306019132 0.0970312687276694 0.100259411995031 0.106012194973085 0.104613278161434 0.0964869070901886 0.10271643794632 0.097342798720058 0.103458646235236 0.0996758482397769 0.101022063422055 0.102096731821744 0.101196497843670 0.110063012086571 0.0987836172359494 2 2|0 -|/ 15456918 15458346 15457856.778 15456682 15458505 - gene protein_coding_gene FALSE TRUE AT2G36835.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07355.1); similar to Os01g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044417.1) -0.240879664846554 -2.87605925860951 0.0152298925359493 1 2.43038404284586 19.2873332612725 -0.240879664846554 0.0349304279330839
AT3G45870_at 1.33510517379340 1.42619832221008 1.24989749967177 1.36699690790163 1.72785274602022 1.63222225928265 1.12365202240975 0.859540386909266 1.18485977554089 1.08750565274306 1.06721668772816 1.23448623654212 0.806707979616033 1.31225502946944 1.04308723239225 1.51102965270262 1.53710997373545 1.57090159225833 0.92125325031488 0.192698648763228 0.184178141512828 0.183928420985312 0.189353502622811 0.183767595834433 0.183767595834433 0.191625015060257 0.187253882832838 0.188893657786541 0.189115470304258 0.183767595834433 0.183767595834433 0.183767595834433 0.192098681147194 0.184790270885720 0.186297750954788 0.183767595834433 0.196317108463525 0.186853274221262 3 3|0 +|/ 16878882 16879654 16879272.125 16878187 16879911 + gene protein_coding_gene FALSE TRUE AT3G45870.1|AT3G45870.2 integral membrane family protein / nodulin MtN21-related similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G19185.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE84659.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.251964057705527 2.87568942304307 0.0152399240532104 1 2.42980394944558 2.50262759356909 0.251964057705527 0.0549732264287646
AT4G23950_at 2.91848964608899 2.84787637613699 2.3621595735449 2.51775043273248 2.35895572451008 2.73980394517143 2.74253320976643 2.99346186452781 2.61731090641329 2.26919114119605 2.60148626678526 2.40890434736747 2.44197118118069 2.08210841712969 2.34235663186415 2.50403574626027 2.40774653911281 2.24093591985858 2.75939361756665 0.240821862926215 0.242907472286229 0.250812950719506 0.250611185510614 0.243390164210888 0.249052343601978 0.254743268094644 0.245002239348604 0.245829596262442 0.247141787091644 0.245673203747299 0.238269817465938 0.238256688789000 0.246340412178395 0.241496280829010 0.243767747564452 0.246056429610608 0.251001436411345 0.244553745492296 4 4 + 12443674 12444316 12444133.909 12442563 12444340 + gene protein_coding_gene FALSE TRUE AT4G23950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22882.1); similar to Os01g0876400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044969.1); similar to membrane protein CH1-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92455.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Sad1/UNC-like, C-terminal; (InterPro:IPR012919) -0.275430806168732 -2.87507980581546 0.0152564739253303 1 2.42884775963488 5.14879135635332 -0.275430806168732 0.0842840717246266
AT1G05380_at 7.01893097734928 7.3223397918106 7.48604410692971 7.33641974508068 7.7024397057061 7.77564754548785 7.3010232059433 7.4941762623409 6.99723273099582 6.67962575025371 6.95651939015293 7.21701920133171 7.2999279642448 7.22728947230556 6.96965434865996 7.3180941230328 7.45955261937179 6.93396958963977 7.14447280511502 0.175305858981524 0.17046371800783 0.167245861231788 0.16905933196134 0.165271726571283 0.171875032557574 0.16616342105408 0.164701545058394 0.167877490369535 0.172710673793804 0.164438011541899 0.163047053948574 0.170196638568834 0.170234466191949 0.1660375351399 0.162712966867444 0.181317978156983 0.162712966867444 0.174711199428105 1 1 + 1581667 1582164 1581916.182 1576862 1582613 + gene protein_coding_gene FALSE TRUE AT1G05380.1 DNA binding similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G14920.1); similar to PHD finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83629.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.261664896455481 2.87287948452963 0.0153163581323215 1 2.42539659176279 14.4862262179380 0.261664896455481 0.0685942604870364
AT3G55600_at 5.18179438703636 5.20770875254379 5.36236099718727 5.40167639838848 5.58971298860972 5.31413474807038 4.81052417445662 4.88354446628436 4.57575123312262 4.28389484315682 4.66785840078694 4.71432833986195 4.41528831115472 4.95315064356238 4.40630249805333 4.68063634487256 4.55606491221863 4.59217637610721 4.70727638645391 0.194792760774073 0.195626321183455 0.195565823236036 0.201058006992339 0.196400629946188 0.192507502258521 0.197171390689103 0.195518002475193 0.196518029232914 0.198668604588586 0.194866312478602 0.194316364717478 0.195001346873821 0.190061350311145 0.193834051470788 0.194729660782819 0.206116260503245 0.196462183500971 0.195199136362343 3 3|0 +|/ 20632145 20633295 20632824.6 20631448 20633449 + gene protein_coding_gene FALSE TRUE AT3G55600.1 similar to cation exchanger, putative (CAX10) [Arabidopsis thaliana] (TAIR:AT1G54110.1); similar to Os09g0272500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062740.1); similar to Os08g0533700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062347.1); similar to cation exchanger-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13159.1); contains domain no description (G3D.1.20.5.110) 0.248498289366557 2.87223201091969 0.0153340246584052 1 2.42438105660354 9.79169872202462 0.248498289366557 0.0500042895313448
AT4G05440_at 3.56258923089651 3.93847919854277 3.42222665536764 3.94599668170893 3.47221698358513 3.0637835689119 4.04636976899884 4.04095065345812 2.94808338014579 3.75875145352409 3.22391068343913 2.39399519151941 3.00558197841113 2.53870326368543 3.07635884766754 3.64329533586281 3.40806251342831 3.04753921397686 3.11960682989437 0.278033718467158 0.261186586060341 0.259502005806489 0.257018395273864 0.257482796437543 0.265233556164797 0.259829047841406 0.283586887313054 0.266643905869204 0.259222590367127 0.253686453756512 0.262240638668468 0.258714528531773 0.260768123294267 0.262850048357042 0.259038484450343 0.262828327670638 0.259259690507942 0.264087075435625 4 4 + 2757679 2758195 2757894 2757211 2758272 + gene protein_coding_gene FALSE TRUE AT4G05440.1|AT4G05440.2 EDA35 (embryo sac development arrest 35) similar to chromosome 10 open reading frame [Xenopus tropicalis] (GB:CAJ83730.1); contains InterPro domain D123; (InterPro:IPR009772)|similar to cell division cycle 123 homolog [Danio rerio] (GB:NP_957015.1); contains InterPro domain D123; (InterPro:IPR009772) -0.327170458301625 -2.8718350590727 0.0153448657110413 1 2.42375845808673 6.84540730919385 -0.327170458301625 0.132075465594542
AT1G03905_at 1.43327474981776 1.63182819630037 1.36995095684320 1.20260583910267 1.1891558935693 1.53885116109623 1.40989288898484 1.62925441371498 1.64401946866254 1.82460846130449 1.28550757451393 1.25908770411783 1.18361554921886 1.11301514320285 1.17211021516195 0.61506927558322 1.44840573338996 1.32662803287811 1.10574692353668 0.232305538706461 0.222894664929766 0.223504482120843 0.221908186802807 0.214736406482317 0.218122786376814 0.214736406482317 0.221318725846715 0.221626772494602 0.223568257593888 0.215108695294392 0.21910165862986 0.221194254757869 0.218135091496868 0.233844104081811 0.221154419108663 0.220886918595114 0.214736406482317 0.219070186077767 1 1 + 994610 995546 995312.909 993399 995593 + gene protein_coding_gene FALSE TRUE AT1G03905.1 ABC transporter family protein Identical to Non-intrinsic ABC protein 4 (GCN-related protein 2) (NAP4) [Arabidopsis Thaliana] (GB:Q3EDJ0;GB:Q9ZWB0); similar to POP1 [Arabidopsis thaliana] (TAIR:AT5G44110.1); similar to Lipid exporter ABCA1 and related proteins, ABC superfamily (ISS) [Ostreococcus tauri] (GB:CAL55166.1); similar to Os02g0810300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048469.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.275141656938935 -2.87097893056495 0.015368273369859 1 2.42241567450061 2.77571252310012 -0.275141656938935 0.084395712879711
AT2G44460_at 1.01862447075445 1.13225722330697 1.17970219224342 1.2140908637361 0.782503594457342 1.30061391352297 1.18599164123628 1.33324812262237 1.70176659388033 1.56993188926931 1.15162857044573 1.05009861747263 1.47271997530497 0.889317822448453 0.731273746939921 1.04009661324924 1.27751541639844 1.44115421961307 1.69375566596384 0.202950354271847 0.202927580478974 0.203786803482971 0.200194406494345 0.201659745400828 0.205356809348495 0.199606026315413 0.199451141271449 0.198357517906106 0.198053847048049 0.204183427564957 0.199133491424658 0.199689226434873 0.203236488057337 0.198053847048049 0.198053847048049 0.198871795876233 0.213380495171452 0.207698642754083 2 2 + 18356334 18356839 18356624.545 18353527 18357042 + gene protein_coding_gene FALSE TRUE AT2G44460.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G24550.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44470.1); similar to DIN2 (DARK INDUCIBLE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G60140.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.285864241896916 -2.87083118126725 0.0153723166444063 1 2.42218394041404 2.53681750562093 -0.285864241896916 0.0954499242614198
AT4G24000_at 1.7869339282825 1.54669080686233 3.60749719236927 3.00917415555057 1.51441776345685 1.74909157396458 1.28137328202648 1.86678265700998 1.60253298971603 1.41401519908959 1.48167909832139 1.72639244009161 0.927046624953235 1.57492979452953 1.00410537641510 1.50333559194608 1.40735789516521 1.30963768928748 1.48943977043703 0.251886872302974 0.259838073133246 0.278455623726722 0.283413572748149 0.255346661628789 0.251886872302974 0.262179636582783 0.251886872302974 0.252223291200452 0.266785448305934 0.256067651431397 0.264926489228466 0.261047558452626 0.256704409280936 0.275037505828477 0.252232985990288 0.259006391738706 0.256827216321025 0.260151503926236 4 4|0 +|/ 12463557 12464214 12463942 12462040 12465635 + gene protein_coding_gene FALSE TRUE AT4G24000.1 ATCSLG2 (Cellulose synthase-like G2); transferase/ transferase, transferring glycosyl groups encodes a protein similar to cellulose synthase similar to ATCSLG3 (Cellulose synthase-like G3), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G23990.1); similar to ATCSLG1 (Cellulose synthase-like G1), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G24010.1); similar to cellulose synthase-like protein CslG [Nicotiana tabacum] (GB:AAZ79231.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) 0.357207290107244 2.86713959043330 0.0154736865661724 1 2.41639408081164 3.47964844506678 0.357207290107244 0.156083713144917
AT1G54290_at 8.0929727204464 7.98100430514184 8.52433161223602 8.5871981839231 8.49951312231125 8.5234414397761 8.72001476757782 9.0611822952298 7.80448999120232 8.16951050723434 8.32815147045223 8.07655760306517 8.6692946389759 8.43903254113216 8.05187920163345 8.53077360981016 8.7376490994964 8.4276113758483 7.91757865597047 0.113696459374547 0.11175882207764 0.113904751539148 0.112185940173433 0.111414884192826 0.113425060683819 0.107635754192613 0.109290157604942 0.112600896173282 0.114169624029521 0.112080144575567 0.115466569327108 0.110139945978191 0.109372407278061 0.112657379665230 0.106575080976796 0.112984355351571 0.115127366605579 0.107966995420282 1 1|0 -|/ 20272673 20273027 20272800.2 20272152 20273774 - gene protein_coding_gene FALSE TRUE AT1G54290.1 eukaryotic translation initiation factor SUI1, putative Identical to Protein translation factor SUI1 homolog 2 [Arabidopsis Thaliana] (GB:Q94JV4); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT4G27130.1); similar to Protein translation factor SUI1 homolog (Translation initiation factor nps45) (GB:Q9SQF4); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874) 0.256793270939334 2.86471570160001 0.0155406096688813 1 2.41259261752685 16.684446511174 0.256793270939334 0.0632199213902661
AT3G05830_at 4.83850333173912 4.86174893219686 4.61773683349637 4.68766457729073 4.17028329927258 3.85190358149191 4.08599721111895 3.99582415194838 4.43441419359901 4.53778790872297 3.96794429970483 3.99262204628662 4.28890120997074 4.01044001427001 4.08198235652269 3.94322925296198 4.18567363115654 3.99653049938864 4.38323151071724 0.225562972004945 0.226427549769638 0.219540765281194 0.222202536709854 0.223094488690067 0.220227692087230 0.217726722539970 0.229912568237619 0.229379921368183 0.221831963534898 0.223355743595120 0.222449741809306 0.220964922262274 0.220332045139038 0.220778225591312 0.229505700839525 0.217726722539970 0.228050400730045 0.219120092795109 3 3|0 +|/ 1737771 1738539 1738037.9 1736686 1738670 + gene protein_coding_gene FALSE TRUE AT3G05830.1 Encodes alpha-helical IF (intermediate filament)-like protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD86886.1); similar to Os05g0135900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054577.1); contains domain no description (G3D.1.20.58.60) -0.253508562213288 -2.86466970908238 0.0155418823118993 1 2.41252048709847 8.64382104888394 -0.253508562213288 0.0586670809959221
AT2G13690_at 5.05806648880565 5.22921238059328 4.40630156753378 3.98963139011336 4.5440483849146 4.78253203891272 4.72712917632585 5.29584514231899 5.01866271030218 5.40116624265874 5.41544425722090 5.73831484313577 5.11287249518592 4.7745828085587 5.68931775566553 5.0888621359257 5.3624181432239 5.64417105935671 5.65766348780352 0.213473474084517 0.221782536902567 0.215915856906211 0.217386478732293 0.211945820305788 0.219639378529584 0.214371131322997 0.219721236639311 0.224689845507879 0.220395211733210 0.221479312936634 0.217743272008961 0.215120360092182 0.221631289755195 0.223215044077188 0.215643091564088 0.223123780210322 0.219024797677158 0.211986248885016 2 2 - 5713811 5714336 5713995.818 5713589 5716039 - gene protein_coding_gene FALSE TRUE AT2G13690.1 PRLI-interacting factor, putative similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT1G63850.1); similar to Os04g0278000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052356.1); similar to Os07g0259700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059321.1); similar to f13j11 PRLI-interacting factor G, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96017.2) -0.326425580639832 -2.86439572264147 0.0155494658589749 1 2.41209079287853 10.1103018632926 -0.326425580639832 0.132159531582299
AT1G30820_at 5.46281704807132 5.74754490175697 3.86608532494498 3.55785182481312 5.71953489616054 5.43003804516353 5.80407811922545 4.94729203385878 4.16568405125497 4.58716186874463 4.9512637507557 6.05391704749767 5.63919396260701 4.6768753574067 4.47174625103255 5.8197578678053 4.36227730796862 3.82705249700626 5.90506315285148 0.241324569415074 0.239745157796526 0.245891205200272 0.244856770110582 0.239158394319941 0.243257715346391 0.250966338404584 0.247366396803567 0.262249669682892 0.254923901636872 0.243114768151031 0.239158394319941 0.247332909358168 0.243744558834854 0.24130849882669 0.239158394319941 0.239158394319941 0.256190254283418 0.251337160884129 1 1|0 -|/ 10945241 10946223 10945662.8 10944894 10949439 - gene protein_coding_gene FALSE TRUE AT1G30820.1 CTP synthase, putative / UTP--ammonia ligase, putative similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3G12670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to putative CTP synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61286.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.378882344323983 -2.86335997541578 0.0155781673376330 1 2.4104664392993 9.9975203723545 -0.378882344323983 0.172531999122593
AT1G79975_at 6.13229218367671 6.45263369322948 6.5116855937165 6.2139028252894 7.10925491023232 6.661235824462 6.58802904221585 6.50613728345543 6.60652077842536 5.8064794830296 6.57980019053867 6.36731000439948 7.01395386619417 6.50739490383198 6.2726760854115 6.70615398701815 6.04730994371699 6.60407981869688 5.9396129956079 0.244036044818220 0.239882476259466 0.239782503831274 0.242423416217187 0.245150981781534 0.247067011827903 0.239733250609324 0.249298547446515 0.265754915998267 0.244560018713573 0.252724828086282 0.242537099325385 0.239733250609324 0.256648608035508 0.246631908382145 0.246317259754636 0.272822376261034 0.250807425878598 0.243405110784294 1 1|0 +|/ 30089425 30089878 30089706 30089007 30090494 + gene protein_coding_gene FALSE TRUE AT1G79975.1|AT1G79975.2 similar to Os01g0593600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043462.1); similar to hypothetical protein DDBDRAFT_0190211 [Dictyostelium discoideum AX4] (GB:XP_645912.1); contains domain SUBFAMILY NOT NAMED (PTHR12952:SF5); contains domain FAMILY NOT NAMED (PTHR12952) 0.299521917701189 2.86160276465866 0.0156269826216694 1 2.40771067055973 12.8368327206998 0.299521917701189 0.109274205279358
AT2G01540_at 8.0380548012948 8.22384544013745 7.87924204251634 8.1910631535364 8.14433725967934 7.46933027661603 5.00098018276052 5.80911108259696 5.51294953282757 5.40810826037331 4.78022738695439 4.85046119346831 5.47335469383221 5.14246593184675 5.22528917147872 5.14954391363473 5.03699975830657 5.02226786154921 5.35172762312218 0.252951442994729 0.244079555931846 0.23772645794516 0.236338518485671 0.241437080285010 0.240969246102724 0.229090779013302 0.228860156613937 0.232337321738183 0.228860156613937 0.237538682096413 0.235884229959108 0.228860156613937 0.233073301484717 0.230301404695447 0.230642910885867 0.232915290827425 0.233273117581807 0.235573017395162 2 2|0 -|/ 242300 243206 242821.4 242122 243492 - gene protein_coding_gene FALSE TRUE AT2G01540.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70790.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.406904869916222 2.86138110307797 0.0156331512463497 1 2.40736305140555 12.5991645520547 0.406904869916222 0.192741300805919
AT1G07830_at 5.65304267453851 5.5474489458712 4.91504092143343 5.16805754668213 5.11794398725745 5.11108308228451 5.57484897722044 5.27517558113897 3.56750231929771 4.25509411911355 3.83567750980268 4.11296807289676 4.06061712010689 3.84155005486665 4.74499375317726 4.29180312116067 4.22502337165383 3.55665217158042 4.69633855148632 0.218970489244327 0.216489354174672 0.212246856414948 0.212246856414948 0.219817803791786 0.213532595212803 0.214261067527797 0.220036411475383 0.227547233502323 0.214701768175042 0.220704549184706 0.213711437551137 0.212869531227347 0.214514009109005 0.218149600180597 0.212503722782708 0.213074900538238 0.217891583051918 0.212246856414948 1 1|0 +|/ 2422548 2423296 2422947.2 2422238 2423650 + gene protein_coding_gene FALSE TRUE AT1G07830.1 ribosomal protein L29 family protein similar to Mitochondrial/chloroplast ribosomal protein L4/L29 (ISS) [Ostreococcus tauri] (GB:CAL53798.1); similar to Os06g0128500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056673.1); contains InterPro domain Ribosomal protein L47, mitochondrial; (InterPro:IPR010729); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.261957671669057 -2.86112227612457 0.0156403572327626 1 2.40695714921868 9.42364970298908 -0.261957671669057 0.0702991124663321
AT3G26800_at 2.09538205349300 3.15515496729538 2.39112319687906 2.45715430545103 2.28622767092717 2.36477701610444 2.96163108050516 2.59733890821080 2.8520207953536 3.01207384488002 2.25606427847190 2.36703272891087 2.00393050621897 2.19139703941156 2.06886653384650 2.20023293908949 2.64587413983776 2.63941410048358 2.50057569935828 0.398367728129819 0.398367728129819 0.431631889947483 0.398367728129819 0.404642250079734 0.403596191695442 0.403425069730459 0.408211262319793 0.401974019602188 0.398367728129819 0.398367728129819 0.419556057104027 0.40686213322062 0.409120726431749 0.414452584630341 0.409349231725905 0.433930260516133 0.430367224508343 0.403548827000733 3 3 + 9863550 9863959 9863766.667 9863410 9864015 + gene protein_coding_gene FALSE TRUE AT3G26800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24945.1) -0.409589059141230 -2.86016529279251 0.0156670294450155 1 2.40545638402386 5.08101113976549 -0.409589059141230 0.194742829278945
AT4G19640_at 10.9661216556078 10.9596213867549 11.3371088729699 11.2718804181321 11.4564187052054 11.2258211002389 10.789359607306 10.7883116777395 10.5942408810748 10.6237493375745 10.6012057509941 10.4669864519841 10.8064743880871 10.6887898211635 10.3219682028484 10.7276016094387 10.6505153016780 10.6249664583812 10.5003737350043 0.0747150704663764 0.0722965070927082 0.0739644376249528 0.074620555000861 0.073659650662415 0.0745596912959081 0.0755104617157607 0.0740133883836816 0.0781435549279612 0.0750692458350807 0.0743907638959914 0.0722965070927082 0.0722965070927082 0.0740130444667738 0.0747592646744251 0.0722965070927082 0.0785859698968519 0.073402633924575 0.075729447072016 4 4|0 -|/ 10687454 10689021 10688407.1 10687208 10689621 - gene protein_coding_gene FALSE TRUE AT4G19640.1 ARA7; GTP binding Encodes Ara7. similar to RHA1 [Arabidopsis thaliana] (TAIR:AT5G45130.1); similar to ras-related GTP-binding protein [Nicotiana tabacum] (GB:CAA50609.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.242614602902619 2.859473589092 0.0156863363640865 1 2.40437164897233 21.6912561693058 0.242614602902619 0.0414874360206594
AT2G17170_at 0.89131090574366 1.22968134027913 1.16648650353620 1.29275915202585 0.896800959532823 1.26825617189256 1.19200569599894 1.34487095068723 1.29641872104552 1.61314017327909 0.588844837708832 1.03854038927644 1.10414701346471 0.6468221951388 0.836317680844654 0.72551400763568 0.873655405498839 0.947153585978077 1.29682007596639 0.198970636843060 0.202920064098259 0.198970636843060 0.20635832860371 0.208414012585996 0.202172605167641 0.200910246553924 0.198970636843060 0.204393816852685 0.204067123759892 0.206409168262356 0.202380200040137 0.204577008141713 0.200344844922652 0.205013915029668 0.204039441338887 0.207849162876449 0.212695596092489 0.203119980632027 2 0|2 /|+ 7482659 7483482 7483001.111 7481818 7483520 + gene protein_coding_gene FALSE TRUE AT2G17170.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17090.1); similar to Os03g0132800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048870.1); similar to protein kinase-like protein [Oryza sativa] (GB:AAG13605.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.28269673020873 -2.85881989918334 0.0157046041310042 1 2.40334653676648 2.28389681639884 -0.28269673020873 0.0934793325594387
AT2G45750_at 2.70048096270640 2.80600487624385 2.79943170740316 2.88549287517198 2.63828465162379 2.67210075364725 3.31518109015959 3.19204552937476 3.40291733649913 3.40784605062344 3.04078284998691 3.60762415458072 3.37228100650749 2.93661679712223 3.20344273724295 3.32292192588043 3.10221310719546 3.24790191410167 3.54239876904887 0.210297321503197 0.208774241006524 0.220762009507200 0.211757361469378 0.202951171389324 0.204420252071512 0.208800053346416 0.202951171389324 0.217627784630445 0.208010580957308 0.206266621152824 0.203883358676829 0.206810626714453 0.209957404703377 0.209340904399789 0.203687246210863 0.220613028136802 0.209391858784585 0.210771587898558 2 2 + 18851736 18852392 18852058 18849613 18852541 + gene protein_coding_gene FALSE TRUE AT2G45750.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE88265.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.238215804069761 -2.85750079383603 0.0157415322239589 1 2.40127795231892 6.21626636260854 -0.238215804069761 0.0323050537090784
AT4G02060_at 2.58262740564682 2.63345011114174 2.56818628095730 2.07204926811662 1.59520492438058 1.42174863709434 3.0518899527976 2.87454450608375 2.58443164362926 2.49192554525979 2.85593438171233 4.01377936124351 2.38197175665524 3.12310951171801 4.34938085651886 2.70677684413587 1.67979619835252 2.72565848664492 2.96097507856687 0.266888198533169 0.262389992751805 0.267792847314706 0.265672419913267 0.270071904257542 0.277903072889961 0.266939600329293 0.259701895110921 0.260262746630005 0.269403051704859 0.259845292181676 0.276098723423565 0.272799910039498 0.259882767078162 0.278235798292983 0.268174828657276 0.268281103339127 0.268980766656389 0.258170643168184 4 4|0 +|/ 904517 905270 904840.889 901388 905590 + gene protein_coding_gene FALSE TRUE AT4G02060.1 PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase PROLIFERA Identical to Protein PROLIFERA (PRL) [Arabidopsis Thaliana] (GB:P43299;GB:O04721); similar to minichromosome maintenance family protein / MCM family protein [Arabidopsis thaliana] (TAIR:AT5G44635.1); similar to replication licensing factor MCM7 homologue [Zea mays] (GB:CAC44902.1); similar to mini-chromosome maintenance 7 [Pisum sativum] (GB:AAQ72567.1); similar to contains MCM2/3/5 family signature; PROSITE; PS00847; disruption leads to early lethal phenotype; similar to MCM2/3/5 family, most similar to YBR1441 (GB:AAC37429.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain MCM protein 7; (InterPro:IPR008050); contains InterPro domain MCM; (InterPro:IPR001208) -0.285445273738127 -2.85703483897009 0.0157545973050161 1 2.40054726379608 5.17929347599799 -0.285445273738127 0.0963952340504736
AT2G05080_at 1.10372255750712 1.05361348453541 1.59678306309241 1.48336808337336 1.22681345705268 1.60177605745505 1.12823634011253 1.33697461383438 1.3337015088637 1.23879473878783 1.62307604962029 0.949827532891095 1.54247657741514 1.51681936628877 1.12634280889041 0.825078348087918 1.58690900841385 1.46427704292038 0.77557958295685 0.182523351339297 0.186800435348037 0.186693995676171 0.187663512388298 0.179610517488838 0.186551981655439 0.179658118062557 0.179610517488838 0.185702808150421 0.179941406606955 0.184148154336884 0.181608280336841 0.190325182894049 0.183492258666701 0.181378964056890 0.180187390857411 0.184384781822507 0.18869411923158 0.180209080101048 2 2 - 1805919 1806022 1805973.444 1805748 1809972 - gene protein_coding_gene FALSE TRUE AT2G05080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to ATP binding / helicase [Arabidopsis thaliana] (TAIR:AT5G37110.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 27.t00039 [Brassica oleracea] (GB:ABD65060.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) 0.267436990596271 2.85691929474125 0.0157578387718180 1 2.40036607349723 2.53909901646309 0.267436990596271 0.0773038293020819
AT1G73390_at 8.13509681418282 8.21489323827269 8.89077147008343 8.82122424743573 9.03194277519521 8.42855355076528 9.32905131097893 9.09487544884982 7.92632444568297 7.92206482171087 7.89817564782072 8.46524851680409 8.64897960312317 8.57313680650183 7.8762660459576 8.86601063507351 9.15483425818967 8.60441808674325 8.16099014933709 0.170584525356756 0.162564262632347 0.174232851621513 0.175129239649171 0.168069136303837 0.178077520730105 0.162591919811641 0.171900488006449 0.181973120960526 0.163188470327078 0.171703887967842 0.162290949140448 0.164689164798562 0.175456531527447 0.173895281611183 0.162290949140448 0.165605402078935 0.162290949140448 0.166884722208645 1 1|0 -|/ 27594772 27596093 27595092.3 27594471 27598803 - gene protein_coding_gene FALSE TRUE AT1G73390.1|AT1G73390.2|AT1G73390.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17940.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23062.1); contains domain PCD6 INTERACTING PROTEIN-RELATED (PTHR23030) 0.303700517790967 2.85680325527375 0.0157610948039526 1 2.40018410688447 17.0003061931057 0.303700517790967 0.113495520336897
AT3G12190_at 2.21076466087019 2.02150347693612 2.85268236896777 2.82522736968534 2.5164491258624 2.54843223334346 2.12119761664737 2.35757473612188 2.62377043326192 2.73130071209352 2.73074674769770 2.52410816545966 2.66983144108492 2.59532806030739 2.5314342490904 2.36273574246814 2.5412630952458 2.5241905425839 2.35506407289399 0.166165571862547 0.166117012746136 0.165897442987061 0.172618086256762 0.165064928711443 0.163803966679348 0.164566984024068 0.165024499045262 0.169269239934567 0.166839787108099 0.163803966679348 0.166107228066244 0.168725059767812 0.181080911044107 0.163803966679348 0.17218203627845 0.164529594170683 0.168482734063196 0.163803966679348 3 3 + 3886434 3886970 3886741.545 3886190 3886999 + gene protein_coding_gene FALSE TRUE AT3G12190.1 similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT5G27220.1); similar to hypothetical protein PY01156 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_728880.1) 0.248923667281641 2.85626655594454 0.0157761631874829 1 2.39934248879809 4.99672886267534 0.248923667281641 0.0529079462173141
AT1G75210_at 8.25306109110988 8.43461754412727 8.51019083938773 8.45295130767232 8.4555569908308 8.32804725265786 9.3714973514968 9.21967041034893 8.68760134192872 9.07326362523147 8.92929467129481 8.88956837784003 8.92949579860247 8.79641793939795 8.89392326593532 8.83262494233832 8.9519568060015 8.60003728534735 9.12251002554557 0.122144176123892 0.129414882053249 0.126157312429736 0.125699004458696 0.128060850982995 0.139186363649030 0.124764658466832 0.123928842539273 0.151855556136165 0.126696981394833 0.120331776722769 0.119795557826123 0.122673616425366 0.145236522966651 0.121100100583849 0.119795557826123 0.129313337915981 0.127204125379304 0.124286451666510 1 1|0 +|/ 28230574 28232380 28232007.375 28227530 28232636 + gene protein_coding_gene FALSE TRUE AT1G75210.1 5' nucleotidase family protein similar to 5' nucleotidase family protein [Arabidopsis thaliana] (TAIR:AT5G48960.1); similar to Os03g0774300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051421.1); similar to Similar to IMP-GMP specific 5'-nucleotidase (ISS) [Ostreococcus tauri] (GB:CAL55914.1); contains InterPro domain HAD superfamily (subfamily IG) hydrolase, 5' (InterPro:IPR008380) -0.245617556678703 -2.85566557171854 0.0157930535519511 1 2.39840007069337 17.5352190401606 -0.245617556678703 0.0475661963254018
AT1G17180_at 1.47884577121833 1.46660420304919 1.51354631854693 1.42316210109502 1.36724795788445 1.60867750163439 1.35680850724757 1.58589063857766 1.82722314236873 1.76974641233167 1.15912704223005 1.44515021190660 0.988416783046213 1.38435222847640 0.96587693843052 1.34105197953378 1.06774518374768 1.36487454028254 1.58533040945148 0.199745387451016 0.199374178147756 0.199953549590621 0.210438980381461 0.197441370416139 0.207874716968556 0.200199115164205 0.199971049733117 0.203858237016760 0.200268071291708 0.197441370416139 0.205950829745686 0.216598433415688 0.211798343972413 0.206840867179085 0.200793892674559 0.198941323201437 0.201412563342986 0.208853422442476 1 1|0 +|/ 5872310 5872896 5872560.7 5872138 5873079 + gene protein_coding_gene FALSE TRUE AT1G17180.1 ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU24 (Arabidopsis thaliana Glutathione S-transferase (class tau) 24), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17170.1); similar to glutathione transferase [Carica papaya] (GB:CAA04391.1); similar to 2,4-D inducible glutathione S-transferase [Glycine max] (GB:AAC18566.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.253368884080114 -2.85475826542366 0.0158185872459364 1 2.39697731657568 2.94610171732703 -0.253368884080114 0.0597191586595394
AT3G15180_at 5.50004702214827 5.50150249961426 6.29223219986897 6.01144281207002 5.77606986777406 5.34833325716239 6.05821629834558 5.93347181107417 5.08335014561588 5.32583907033922 4.35186028131828 4.44214564108989 4.39157262986634 4.93725952504837 4.1771826948308 4.57114783500123 4.5017505684095 4.35918742092428 4.99637358008028 0.269978898941674 0.269978898941674 0.280502340564065 0.273537984101913 0.272963251149187 0.2773292430395 0.273237955289452 0.275213208964271 0.271282261784081 0.273116624460093 0.274590821084149 0.279580888000435 0.269978898941674 0.269978898941674 0.269978898941674 0.269978898941674 0.272183506022811 0.27522397335741 0.283545051293882 3 3|0 +|/ 5114538 5115770 5115118.444 5111900 5115998 + gene protein_coding_gene FALSE TRUE AT3G15180.1 proteasome-related similar to hypothetical protein [Trifolium pratense] (GB:BAE71213.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.27998207384704 -2.85463711037995 0.0158219999545597 1 2.39678733378742 10.603514932627 -0.27998207384704 0.0911399568999347
AT2G31050_at 1.2565232715879 1.49934516076386 1.66359325765316 1.30668974401107 1.04749240348176 1.31112788066864 1.60595006210911 1.46236540271417 1.81205300900097 1.99747212560796 1.56440312603417 1.36492198143325 1.49359560657778 1.38879116327921 1.29329939669354 1.49256665312829 1.28071697901545 1.86932374513540 1.90318586658242 0.216953535248338 0.214889394501317 0.213691403048459 0.221342181319016 0.215418244827208 0.221408562961988 0.223242562835621 0.212581291943026 0.224330556008461 0.213307310088497 0.215454106529361 0.215331632791643 0.220836878276623 0.216182397577618 0.212588306851541 0.212581291943026 0.219642075527890 0.225927291441495 0.217628944418376 2 2 + 13219238 13219801 13219595.545 13219227 13219829 + gene protein_coding_gene FALSE TRUE AT2G31050.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein / mavicyanin, putative [Arabidopsis thaliana] (TAIR:AT2G26720.1); similar to Blue (type 1) copper domain [Medicago truncatula] (GB:ABE91701.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.279802410912541 -2.85427855542310 0.0158321040886354 1 2.39622508697189 3.08048056377834 -0.279802410912541 0.090991676048995
AT2G30390_at 9.43317315123312 9.3219741810044 9.46168456219316 9.23416121097426 9.44054460948445 9.12072799100971 10.2805042417657 9.89986567709945 9.4283091373608 9.77003561117653 9.57389692928688 9.53400028503828 9.28458276218667 9.46809413596752 9.3703673375627 9.5844240565756 9.55013100742589 9.2460623351404 9.6088197077898 0.101509618544265 0.103063177684600 0.099750815429917 0.104002653041080 0.100518347676621 0.103280522552568 0.103548351706321 0.104169007837975 0.104850054827988 0.104503956091368 0.0994205112539828 0.0998328645420108 0.100314942926505 0.102569874008494 0.102944250123043 0.102284845854587 0.106831284166915 0.113847336972942 0.104100705821114 2 2|0 -|/ 12958320 12959091 12958553.111 12958104 12961167 - gene protein_coding_gene FALSE TRUE AT2G30390.1 ferrochelatase II Identical to Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1) (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) [Arabidopsis Thaliana] (GB:O04921;GB:O23623;GB:Q7GB39); similar to ferrochelatase [Arabidopsis thaliana] (TAIR:AT5G26030.2); similar to ferrochelatase [Nicotiana tabacum] (GB:CAC50871.1); similar to ferrochelatase [Oryza sativa] (GB:BAA22284.1); similar to ferrochelatase [Cucumis sativus] (GB:BAB20760.1); contains InterPro domain Ferrochelatase; (InterPro:IPR001015) -0.285271507660655 -2.85367975065036 0.0158489929019725 1 2.39528611300454 19.0509959572240 -0.285271507660655 0.0965546509212317
AT4G05330_at 5.08326261133873 5.14081239094723 3.24485851620897 3.64582762529699 4.6853874424006 4.42757642105537 2.9882810540179 2.66763009878057 3.08681740135552 2.86644638642357 4.15230249636825 3.68454409662755 3.3035833340267 3.56199005239661 4.06239538735128 2.88811378984369 3.00189577241585 2.96044621085132 2.763258028115 0.242102670596047 0.230353784993764 0.239583053318939 0.229353518374387 0.230046108197313 0.236429834181122 0.227275305661434 0.234745955359572 0.252064582680118 0.233904432238511 0.227275305661434 0.230672416284045 0.231784997060684 0.230679240470151 0.227275305661434 0.233208036735857 0.235131539780587 0.227275305661434 0.230285257976554 4 4|0 -|/ 2720771 2721577 2721122 2720558 2723122 - gene protein_coding_gene FALSE TRUE AT4G05330.1 AGD13 (ARF-GAP DOMAIN 13) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to ZAC (ARF-GAP DOMAIN 12), ARF GTPase activator [Arabidopsis thaliana] (TAIR:AT4G21160.4); similar to C2; Arf GTPase activating protein [Medicago truncatula] (GB:ABE87454.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.288658791494916 2.85308599007550 0.0158657572532422 1 2.39435505673213 7.16416260223072 0.288658791494916 0.0999189157735035
AT1G68840_at 9.06132406157086 9.07025714529466 6.12531417171972 5.89070320508942 8.37822704387437 8.2601772713185 5.6151657014557 5.7670195380937 7.19165306001614 7.23332555044368 7.39671744323747 8.47696132944548 7.79270500907903 7.0159020675301 7.51842683728536 6.41420549230731 6.56762382111048 6.37111566471652 8.00348181326386 0.210279706615275 0.202350505144199 0.212878673249186 0.202394939794090 0.202196994152507 0.203550278292994 0.195811926934839 0.199890536554795 0.196038734016300 0.203145515240552 0.196733484716583 0.204860763999774 0.195518903277012 0.193257413689279 0.193257413689279 0.193257413689279 0.203658619898377 0.197601496742514 0.201175795057143 1 1 + 25884569 25885115 25884833.727 25883990 25885399 + gene protein_coding_gene FALSE TRUE AT1G68840.1 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G25560.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.248391227544409 -2.85295643316684 0.0158694175463466 1 2.39415190390079 14.6062038586339 -0.248391227544409 0.0525235707188741
AT2G29300_at 4.17033857426558 3.99239269944927 4.30358631440434 4.30896646589242 5.14507749334594 4.78008189589319 6.7121578521114 5.83702755601003 5.33983719397763 6.84207279442626 6.70109426729889 6.12215539616836 6.41701102465796 6.2332079491247 5.75792596942767 6.57529020008004 6.8736772539392 6.47685881174652 7.59089467349253 0.230447796828057 0.226557365184961 0.239211361272542 0.235873088115024 0.225554672922264 0.223902233686653 0.230501032526730 0.225759926716698 0.229662157681472 0.233150390143215 0.224607079867290 0.222895386859866 0.221173634658891 0.224928359314466 0.227652622135503 0.221568127588780 0.237417501840412 0.238463856999163 0.225590960843656 2 2|0 +|/ 12595619 12596400 12595947.6 12595274 12596616 + gene protein_coding_gene FALSE TRUE AT2G29300.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29320.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.369916703159245 -2.85286236283607 0.0158720757882285 1 2.39400439634393 11.3989973545986 -0.369916703159245 0.166956813353409
AT2G47590_at 8.47595699533468 8.45125925951637 8.2213824594071 8.0269672595854 8.49873309101043 8.1649035336691 9.13228030053035 9.00306840969619 8.92187353570326 9.03618945340613 8.6074764316206 8.99265754798226 8.71362749998896 8.83024881081034 9.08865191856105 9.10856243861312 8.8354158458284 8.90554170443847 8.65349306678298 0.113341859540352 0.111463915202309 0.119324622750945 0.112585714595506 0.108649728067344 0.111024117089947 0.112480910588132 0.109895113818340 0.109913063101647 0.111216309087102 0.106299255097837 0.114351820962012 0.107211219835951 0.108278529309717 0.110515225743671 0.106299255097837 0.114850995930398 0.107080097173777 0.111731880664879 2 2|0 +|/ 19529793 19530747 19530189.2 19528867 19531133 + gene protein_coding_gene FALSE TRUE AT2G47590.1 PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, Identical to Blue light photoreceptor PHR2 (PHR2) [Arabidopsis Thaliana] (GB:Q8LB72;GB:O22253); similar to CRY3 (CRYPTOCHROME 3), DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] (TAIR:AT5G24850.1); similar to Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula] (GB:ABE84974.1); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050) -0.261445282959225 -2.85266797243835 0.0158775702892964 1 2.39369958193136 17.3747146436076 -0.261445282959225 0.070623507412047
AT4G32900_at 5.98614291192146 6.12234984285289 5.40917929363771 5.88853307260332 5.66854433120333 5.88694713930702 6.1945870699638 6.24573356512635 5.27804154069018 5.69303210058624 5.35912626975905 5.46341375374794 5.5103604154344 5.47074588173678 5.60402771710686 5.26327032376753 5.3242027614669 4.38592276179289 5.3486321977106 0.211671308344108 0.218437179433778 0.213335308635394 0.213000071323560 0.211671308344108 0.225758008618400 0.216812692812854 0.219048074569211 0.222975252836115 0.219292733396295 0.211671308344108 0.214240262014608 0.211671308344108 0.216013103412941 0.223460623751709 0.211965163940023 0.221547947057761 0.225768560489316 0.211841649956398 4 0|4 /|- 15879569 15880308 15880011.5 15878737 15881044 - gene protein_coding_gene FALSE TRUE AT4G32900.1|AT4G32900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03010.2); similar to Os05g0520200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056070.1); similar to hypothetical protein DKFZp434A1535.1 - human (fragment) (GB:T46479); similar to Bcl-2 inhibitor of transcription isoform a [Homo sapiens] (GB:NP_001015509.1); contains InterPro domain Peptidyl-tRNA hydrolase, PTH2; (InterPro:IPR002833) -0.283085299502869 -2.85175467940514 0.015903410275723 1 2.39226750176917 11.2940199942923 -0.283085299502869 0.0945721371764917
AT4G29180_at 1.29779347673873 1.37094420434120 0.954275618665679 1.24901583909383 1.31501445454257 1.18454819020049 1.16758480503061 1.38798301360572 1.50991854950728 1.74883720815888 0.988470192936349 1.01245705316474 1.19660182582212 1.51421529575919 1.03259158879688 1.19647452194741 1.08122892130106 1.34430902767531 1.42158685208815 0.244075120041264 0.238303230303704 0.255602475012284 0.249405153937665 0.239402630028722 0.238303230303704 0.241159558404957 0.242558425333805 0.239100607830066 0.239529733720825 0.242044613467602 0.244205843567304 0.244817039012473 0.244091949607014 0.245102498139683 0.243070198995418 0.24559745558313 0.245631090091179 0.244955162398288 4 4|0 +|/ 14388884 14389501 14389179.2 14385599 14389695 + gene protein_coding_gene FALSE TRUE AT4G29180.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G29450.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19210.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.259841749564740 -2.85152383216085 0.0159099483450386 1 2.39190552704907 2.60634882861576 -0.259841749564740 0.0687485964639866
AT1G78930_at 0.959042189492613 0.922615165527492 1.07015454208506 1.02806917962397 1.07576523795172 0.990872459206804 1.74480686594244 1.27111044177531 1.17794068062941 1.51866105007275 1.13651723546948 0.980014494285176 1.29823457494891 0.803494926777718 1.25796019548538 0.905682527634066 0.711099671832622 1.24892888373554 1.51856814086477 0.201271320027879 0.195058496865873 0.204267978066490 0.203766784861741 0.196559361381839 0.199842653851452 0.199739297662441 0.202717276837823 0.200238073219685 0.201970812072899 0.201393606878570 0.203919201972392 0.201520845256068 0.200766879639673 0.202090925268829 0.199851816320502 0.203383248208415 0.198387624405998 0.196506188752568 1 1|0 -|/ 29683436 29684040 29683727.3 29682990 29685650 - gene protein_coding_gene FALSE TRUE AT1G78930.1 mitochondrial transcription termination factor-related / mTERF-related similar to EMB2219 (EMBRYO DEFECTIVE 2219), transferase [Arabidopsis thaliana] (TAIR:AT2G21710.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45958.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.272746685526053 -2.85136114549312 0.0159145575823201 1 2.39165043069396 2.35670360401405 -0.272746685526053 0.0838365800534463
AT3G56090_at 6.23641614106279 6.90476200865285 5.54739610999009 5.98139592650404 4.66590003701724 4.97263375755674 7.55933040018855 7.19339090999997 4.15507256329246 4.53290879642233 4.80554353549891 6.0111695939669 4.70255521878205 4.73626167102676 6.43232015337812 4.95506049322004 5.71779152035047 4.89151478796008 4.27983381128603 0.212506622570085 0.210065229138219 0.215521541459461 0.213383216613746 0.213032378208532 0.230933612135227 0.207803856541149 0.217350673005756 0.208934234370111 0.217574826463080 0.206370926115565 0.215728873303246 0.208783579974758 0.212296371286537 0.210496569474564 0.206370926115565 0.217063283944861 0.206370926115565 0.207031818070232 3 3|0 -|/ 20825344 20826703 20826226.444 20825026 20827014 - gene protein_coding_gene FALSE TRUE AT3G56090.1 ATFER3 (FERRITIN 3); ferric iron binding Identical to Ferritin-3, chloroplast precursor (EC 1.16.3.1) (FER3) [Arabidopsis Thaliana] (GB:Q9LYN2;GB:Q8WHW6); similar to ATFER4 (FERRITIN 4), ferric iron binding [Arabidopsis thaliana] (TAIR:AT2G40300.1); similar to ferritin [Chorispora bungeana] (GB:ABB22752.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) -0.361360671218184 -2.85080864076680 0.0159302211199373 1 2.39078409542352 10.9347192507581 -0.361360671218184 0.160767626693851
AT1G51080_at 5.61431572055463 5.61265921522645 5.88495256665422 5.88349707011337 6.42261091264422 6.12845544030743 6.94580950826474 6.61482909973507 5.28617233127251 6.22219217297938 6.67218045055187 6.7274381704268 6.36111452855499 6.60543891893736 6.7281240517894 6.7885263352208 6.31327099268848 6.11887877526317 6.16134909963778 0.188496156148255 0.184735056433294 0.185222080558585 0.184890220534428 0.182293125223312 0.193344755441434 0.185066159228622 0.190455833119550 0.187419544965242 0.180997032895887 0.183484857829316 0.181566617525160 0.182964415274535 0.183109259892844 0.181813588030016 0.180690255005577 0.188455517712225 0.194190848693702 0.188347165025615 1 1 - 18933583 18934126 18933868.455 18933412 18934420 - gene protein_coding_gene FALSE TRUE AT1G51080.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80919.1) 0.266221302391905 2.85013788368422 0.0159492578545000 1 2.38973234831154 12.3530292229670 0.266221302391905 0.0766302651634956
AT3G27350_at 7.00960867663398 7.3103250242237 7.33144964289661 7.57876259136164 7.55697521199684 7.3542518144937 9.02728678023395 8.79239151521702 6.44082349565833 7.71259498550833 7.02556292525188 7.10444309454237 7.5424352572484 7.21340953250168 6.65429649342131 8.30725165181832 8.15769465247159 7.04532319973593 7.9002498610462 0.156899036138211 0.156062216563936 0.158752284343397 0.159851536804306 0.160517534536316 0.159552259782721 0.171536092971581 0.166858230954253 0.176354988784397 0.158995721476368 0.163578131245906 0.15508290003046 0.160449182732741 0.158984963590059 0.165433299933135 0.157823610975016 0.170782941346470 0.165907522461265 0.156274490403301 3 3|0 +|/ 10128007 10128790 10128262.556 10127258 10129192 + gene protein_coding_gene FALSE TRUE AT3G27350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40700.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE84619.1) -0.274731931876821 -2.84962061337704 0.0159639540324232 1 2.38892127564815 15.1113938479380 -0.274731931876821 0.0861573421751093
ATCG00280_at 11.8290882571896 11.9260443023298 12.8736709840037 11.8653926900659 12.6329219003653 11.4032019496203 12.3549721308503 12.0500890263400 13.1213635947019 13.2641403370585 14.1973007426041 14.4499540878530 14.2355950186854 13.9004381077325 13.6745378329836 13.9877536859621 13.7826630253658 13.7610792739966 12.8490357074375 0.0780280783095169 0.0787258954059092 0.0770420712053343 0.0850423038287765 0.0770420712053343 0.0823440130043915 0.0802109831797974 0.0788441911993977 0.0886870340501744 0.0784557568063044 0.078727447712973 0.0800921583912706 0.0789780486917301 0.0811139807671996 0.0833097980270766 0.0770420712053343 0.0839686716578661 0.0856324287461856 0.0795080733850818 C C + 34547 35034 34814.545 33720 35141 + gene protein_coding_gene FALSE TRUE ATCG00280.1 chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. Identical to Photosystem II 44 kDa reaction center protein precursor (P6 protein) (CP43) (psbC) [Arabidopsis Thaliana] (GB:P56778); similar to photosystem II 44 kDa protein [Typha latifolia] (GB:AAZ04079.1); similar to photosystem II CP43 chlorophyll apoprotein [Gossypium hirsutum] (GB:YP_538931.1); similar to photosystem II CP43 chlorophyll apoprotein [Glycine max] (GB:YP_538759.1); contains InterPro domain Photosystem antenna protein-like; (InterPro:IPR000932); contains InterPro domain Photosynthetic II protein PsbC; (InterPro:IPR005869) 0.537116897000808 2.84938864479938 0.0159705488971216 1 2.38855755417866 25.6553452059109 0.537116897000808 0.280711012523706
AT2G21550_at 0.766466970205543 1.25647292527722 0.787807542395279 0.564249530024528 0.814881087051554 0.335254685983385 0.800809767835578 0.842298122259732 1.50780131711411 1.43076869095817 0.744717596145625 1.22151734334988 0.902422817208603 1.148832401547 0.999909256420083 1.00877327294982 0.646722333008561 1.39202487956061 1.10911081387511 0.218351089291584 0.218687087614331 0.223932450259987 0.227704444390788 0.223269830093428 0.225253464507581 0.218254949674204 0.218254949674204 0.223844800071571 0.228834031957359 0.218941289053382 0.23305341879837 0.218403088830881 0.223790032350404 0.218254949674204 0.218254949674204 0.222328746639782 0.223835293680184 0.223293456729394 2 2|0 +|/ 9236437 9237227 9236833.7 9234289 9237269 + gene protein_coding_gene FALSE TRUE AT2G21550.1 bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative similar to THY-2 (THYMIDYLATE SYNTHASE 2) [Arabidopsis thaliana] (TAIR:AT4G34570.1); similar to THY-1 (THYMIDYLATE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT2G16370.1); similar to dihydrofolate reductase-thymidylate synthase (GB:AAA32788.1); contains InterPro domain Thymidylate synthase; (InterPro:IPR000398); contains InterPro domain Bifunctional dihydrofolate reductase/thymidylate synthase; (InterPro:IPR012262); contains InterPro domain Dihydrofolate reductase region; (InterPro:IPR001796) -0.316037844078095 -2.84832418320535 0.0160008465077540 1 2.38688851884298 1.94970104296555 -0.316037844078095 0.125012895940362
AT1G17720_at 6.44387138054759 5.93827720466841 6.18255431153696 5.02662459918744 5.83225036758382 4.54863903262348 5.4690866038989 4.78209096112622 5.55988765241505 4.87464232655771 6.71979564459066 6.74161500974441 6.96979124922849 7.01122494874288 6.79774594975527 6.56352540026405 6.47747868309991 5.52792167123943 4.86540431141299 0.244706763557695 0.238245853363859 0.245844420992110 0.239918517086563 0.249419545334563 0.244020668794922 0.237612135509634 0.242300941141571 0.240541328821906 0.238475513301503 0.235871454721708 0.240713949161379 0.235871454721708 0.245686409734680 0.236316214390770 0.23945466244409 0.256946295764308 0.244797316103668 0.24411860380392 1 1|0 -|/ 6094000 6095169 6094455.286 6093201 6098376 - gene protein_coding_gene FALSE TRUE AT1G17720.1|AT1G17720.2 ATB BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor); nucleotide binding type 2A protein serine/threonine phosphatase 55 kDa B Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (PP2A, subunit B, beta isoform) (AtB beta) (PP2AB2) [Arabidopsis Thaliana] (GB:Q39247;GB:Q9FZ61); similar to ATB ALPHA (protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G51690.1); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046)|Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (PP2A, subunit B, beta isoform) (AtB beta) (PP2AB2) [Arabidopsis Thaliana] (GB:Q39247;GB:Q9FZ61); similar to ATB ALPHA (protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G51690.2); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009) 0.620172381480264 2.84777793312174 0.0160164166657440 1 2.38603202992565 11.3784820158358 0.620172381480264 0.333390608990176
AT2G17820_at 7.8474117595127 7.87015075322015 7.35846103176938 7.38166656487174 8.10879995794722 7.88728067166636 7.64132366454292 7.55095631825873 7.79065741138886 7.8586869061549 7.31113009134787 7.54225625340388 6.82599835445136 7.1992825065013 7.53864663262782 7.88055108489095 7.32127231872149 7.35361666878677 7.78578275160986 0.159450218197894 0.153925230980676 0.164558455289853 0.165259821724964 0.15709240798211 0.162851833364634 0.156435457708682 0.158589063751393 0.16128949855303 0.159324242610909 0.159989246953166 0.156684916792473 0.17076540703188 0.157989524840331 0.160668014473245 0.158740465677887 0.173428303253147 0.161188698055796 0.168473998305593 2 2|0 -|/ 7750216 7750746 7750472.1 7750006 7755302 - gene protein_coding_gene FALSE TRUE AT2G17820.1 ATHK1 (HISTIDINE KINASE 1) Encodes a member of the histidine kinase family. similar to CKI1 (CYTOKININ-INDEPENDENT 1), protein histidine kinase/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT2G47430.1); similar to osmosensor histidine-aspartate kinase [Populus x canadensis] (GB:CAI78447.1); similar to cold inducible histidine kinase 1 [Catharanthus roseus] (GB:AAQ10680.2); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.241761675764864 -2.84763761582423 0.0160204186770973 1 2.38581202157297 15.2974079711700 -0.241761675764864 0.0417820802338201
AT3G17830_at 2.01263442430748 2.26878237269140 2.10024292763994 1.94425230459934 1.80930175093832 1.42589699389599 2.30574958655048 2.20828977557344 2.33237450949572 2.00602685022855 1.84501762819112 2.35523899183626 2.12272901440193 1.99097676789962 2.45591866935186 2.63456499396711 1.77390134094264 2.11087454951224 2.65370693263952 0.195168081402190 0.19643455579655 0.198697472432329 0.191525322080161 0.197949054645827 0.203445771055435 0.200636904496244 0.192361284223928 0.195660661556587 0.191525322080161 0.197432582735074 0.203235301199837 0.197859191918571 0.193687166956841 0.191525322080161 0.198494210786936 0.200649061199152 0.196171967027851 0.209111124221199 3 3 + 6103551 6104437 6103965.6 6101795 6104656 + gene protein_coding_gene FALSE TRUE AT3G17830.1 DNAJ heat shock family protein similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G80030.2); similar to DnaJ homologue [Pisum sativum] (GB:CAA96305.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.274245282560361 -2.84697499471505 0.0160393309195992 1 2.38477308136562 4.25532152134161 -0.274245282560361 0.0859094785646935
AT3G16190_at 8.74126657260439 8.58427502208116 8.93168102831869 8.79511555541924 9.3306176274666 8.83448618672323 8.73054908058451 8.51947323906144 7.14915493752473 8.01015646098212 8.18622456288377 7.48863926303128 8.11887270860247 8.03566128427071 7.53610638017836 7.94418598173408 8.43441711247566 7.95552379164363 7.98678092646008 0.174028306148658 0.17375034068881 0.184205490693473 0.1799699702242 0.184328329142783 0.191530569499896 0.173792599861357 0.176830400916085 0.207721046192597 0.192505129161414 0.183614951619925 0.181040879609128 0.171829957724282 0.182715170056324 0.179879595851881 0.182396076787925 0.178570297822221 0.186045779081363 0.183101346574462 3 3|0 -|/ 5489911 5491169 5490470.3 5489707 5491254 - gene protein_coding_gene FALSE TRUE AT3G16190.1 isochorismatase hydrolase family protein similar to isochorismatase hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G23220.1); similar to isochorismatase hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD21815.1); similar to Os02g0276400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046544.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868) 0.288086949089627 2.84647873530277 0.0160535095679546 1 2.38399499075868 16.6473420359948 0.288086949089627 0.100012405037424
AT3G21270_at 5.93696940567523 6.24156084675277 6.30259579182091 6.3810076574868 7.23393884782686 7.14830679836203 5.9884354239509 6.19973281867497 5.35600919175451 6.41423240606963 5.6602090709177 6.37105347346071 6.80300401271703 6.00798565153408 5.58372968093445 6.49552415163511 5.97647627177523 4.79179781933161 6.58922825250538 0.220314480924979 0.220731231265479 0.221161646489554 0.218927953736829 0.230044099384703 0.226432687544065 0.218784859818839 0.227666448422739 0.247719550579006 0.217407735315694 0.217407735315694 0.217407735315694 0.217407735315694 0.230698902941385 0.223853173403586 0.221231999185963 0.229496764842429 0.225754020500500 0.217407735315694 3 3 + 7475033 7475508 7475341.545 7474685 7475763 + gene protein_coding_gene FALSE TRUE AT3G21270.1 ADOF2 (Arabidopsis dof zinc finger protein 2); DNA binding / transcription factor Encodes Dof zinc finger protein adof2. Identical to Dof zinc finger protein DOF3.1 (AtDOF3.1) (DOF3.1) [Arabidopsis Thaliana] (GB:Q94AR6;GB:O82156); similar to ADOF1 (Arabidopsis dof zinc finger protein 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G51700.1); similar to Dof1 [Glycine max] (GB:ABI16003.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.258093441602875 2.84541295432450 0.0160840024419682 1 2.38232396122778 12.4695913488095 0.258093441602875 0.0672254009577204
AT3G22360_at 2.87222261032233 2.97489136078703 3.88310126237079 3.29319589078015 2.67643143994942 3.39109361727566 2.77344402606715 2.87539966919910 2.74143441518995 3.18103667176281 2.99075741064499 2.93969083770228 2.98217179849582 2.98809047346664 3.10903861053143 3.50739097038337 3.41579404764214 3.37944373513846 2.70448889571052 0.243111229789344 0.226945906285368 0.243269375016072 0.238014528204975 0.238617939024213 0.226945906285368 0.236125945144911 0.239766850912783 0.248617763986641 0.230774927426610 0.231975292946255 0.228605684730598 0.232277979433724 0.234881479254052 0.230511922537960 0.226945906285368 0.235065219557532 0.231361184196511 0.226945906285368 3 3 + 7904629 7905365 7905041.273 7904163 7905391 + gene protein_coding_gene FALSE TRUE AT3G22360.1 AOX1B (alternative oxidase 1B); alternative oxidase encodes an alternative oxidase whose expression is limited to flowers and floral buds. Identical to Alternative oxidase 1b, mitochondrial precursor (EC 1.-.-.-) (AOX1B) [Arabidopsis Thaliana] (GB:O23913;GB:Q4PSN3); similar to AOX1C (alternative oxidase 1C), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G27620.1); similar to oxidase (GB:AAA32870.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) 0.362680021973158 2.8450569133273 0.0160942019765085 1 2.38176573356325 6.11232276612149 0.362680021973158 0.162308872433607
AT3G11440_at 3.81228455618152 3.42951110659504 4.44359076385344 3.99741247360355 4.44896369016702 3.97156971233689 3.87778111944347 3.67835907628292 3.52478889626236 3.62116782001715 3.90111610597164 3.97543821720589 3.66335224003087 3.79040738648126 4.03402388169871 3.82663039216701 3.62713662484586 3.94578157835587 3.96839966838634 0.173679943242481 0.175399039297722 0.182614518788318 0.179031527521486 0.189795789300114 0.183224296295568 0.177854877877107 0.182019402815693 0.190258136670507 0.183556617437664 0.181015029480774 0.178263416799945 0.176042705450561 0.184451522472239 0.177373153493809 0.172588493806861 0.182210958120163 0.179291309220855 0.175168276236161 3 3|0 +|/ 3604251 3604899 3604570.3 3602099 3605110 + gene protein_coding_gene FALSE TRUE AT3G11440.1 ATMYB65 (myb domain protein 65); DNA binding / transcription factor Member of the R2R3-MYB gene family. Similar to GA-induced Barley myb gene. May be induced during germination in response to GA. Double mutants with MYB33 are male sterile, showing defects in pollen development and anther development. Contains a binding site for miRNA159 and may be spatially regulated by this micro RNA. The male sterile phenotype of the MYB33/MYB65 double mutant is light and temperature sensitive. Fertility can be restored with increased light intensity and lower temperatures. similar to ATMYB33/MYB33 (myb domain protein 33) [Arabidopsis thaliana] (TAIR:AT5G06100.3); similar to transcription factor GAMYB [Triticum monococcum] (GB:BAE92565.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.328300268576922 2.84484246541198 0.0161003484051813 1 2.38142950760973 7.73256969475794 0.328300268576922 0.135521221146344
AT1G11670_at 1.91057623339207 2.17192878526320 2.04749054475468 1.68028776998288 1.63697272358901 2.07178821422906 2.11315049515117 2.25284409603817 2.15734139162137 2.64149358345859 3.29677201028023 4.57837773122360 3.8724637465756 3.17868926283191 3.73179772238276 3.55800978735842 2.24520354257864 3.05632933442863 2.96313986217991 0.219335827288098 0.219508177250035 0.226954618353912 0.220835738043147 0.220717593452269 0.221933509706879 0.222628292217719 0.219335827288098 0.231566887289061 0.225431353289199 0.219335827288098 0.227895854354958 0.223072683336724 0.219335827288098 0.227485752847628 0.227718518398882 0.224800563880803 0.219678792446054 0.219335827288098 1 0|1 /|- 3928531 3929466 3929048.556 3928162 3931576 - gene protein_coding_gene FALSE TRUE AT1G11670.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G21690.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G61890.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT4G21910.3); similar to Os03g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050520.1); similar to Os03g0571900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050522.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97209.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.299695178565969 2.84473561433870 0.0161034118085693 1 2.38126197968906 4.99914502678041 0.299695178565969 0.111041485804906
AT3G48530_at 9.57128125292638 9.7269931125419 9.67871289134254 9.74315824326288 10.2583293853754 9.86309390911818 9.08910394621044 9.10926953739738 8.54459411678926 9.0264764821153 9.02379557987724 8.73235755357762 9.05693799463491 8.88766964982701 8.5067151459512 9.02505977531797 9.15060508012974 8.88456313424205 9.1062800083627 0.137589740180269 0.141830872379464 0.136476942312984 0.141891667456679 0.143437752460214 0.147458456714556 0.141590341992125 0.139346663901282 0.161406427834975 0.140492506777757 0.143585482215907 0.140912872612304 0.137399384186805 0.140628785146948 0.140756318869311 0.137433653191064 0.147691773927894 0.146484639739843 0.138576267646116 3 3 + 17999844 18000509 18000167.909 17998363 18000748 + gene protein_coding_gene FALSE TRUE AT3G48530.1 CBS domain-containing protein Identical to SNF1-related protein kinase regulatory subunit gamma 1 (AKIN gamma1) (AKING1) (KING1) [Arabidopsis Thaliana] (GB:Q8LBB2;GB:Q9S7W6); similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G69800.2); similar to AKIN gamma [Medicago truncatula] (GB:AAO61674.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.263837215889017 2.84453852082612 0.0161090639783745 1 2.38095296466110 18.5304493805805 0.263837215889017 0.0744370692113658
AT2G03200_at 1.67890475621994 1.48545534578557 1.33683478402595 1.84902913078747 1.28722116390195 1.34975843371253 1.57803871708720 1.52017265043436 2.3813638917712 1.77332946863841 1.65359328871393 1.58130869112225 1.29279965228607 1.77632433338725 1.78396137619958 1.77018887344583 2.53755534750580 2.12422635933333 2.66203960754954 0.187673966267331 0.191563563507136 0.183186033420881 0.196118849567194 0.186911726557965 0.184735208334213 0.185457379735470 0.18481131787284 0.201244279055252 0.189479502244939 0.192688174730891 0.184797515965348 0.197357636918963 0.190357100439885 0.194230263124405 0.184638489592238 0.187872423556681 0.192806852454546 0.183565982898661 2 2 - 966513 967077 966820.273 966448 967915 - gene protein_coding_gene FALSE TRUE AT2G03200.1 aspartyl protease family protein similar to CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1), aspartic-type endopeptidase/ pepsin A [Arabidopsis thaliana] (TAIR:AT5G33340.1); similar to Aspartic proteinase nepenthesin-1 precursor (Nepenthesin-I) (GB:Q766C3); similar to Os04g0448300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052922.1); similar to OSJNBa0064H22.10 [Oryza sativa (japonica cultivar-group)] (GB:CAD40873.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.283590785839289 -2.8435713314344 0.0161368294336024 1 2.37943656107841 3.55429640419552 -0.283590785839289 0.0958893245346156
AT3G61540_at 8.23651614046822 8.36007235606002 8.40292063801975 8.23617943065588 8.26678156855635 8.31100570799786 6.8928747269903 6.96675233600084 8.0099142213994 7.4511073962923 7.44447050085276 7.3016045225964 7.36350983079595 7.87167049914154 7.29718686551444 7.53315740282566 7.09815815366063 7.56127840193465 7.47190690928053 0.199914879207016 0.198835649585366 0.200650771434537 0.198390997705063 0.196361284305189 0.198573627319448 0.200700514480644 0.203850767557664 0.211052825858230 0.197152602171044 0.195343337010424 0.197788535086476 0.192900759191789 0.200031375077890 0.201701900760151 0.192964973335652 0.208851167180339 0.203819665205635 0.197081424066439 3 3|0 +|/ 22785657 22786585 22786207.4 22784361 22786802 + gene protein_coding_gene FALSE TRUE AT3G61540.1 peptidase family protein similar to Os06g0163600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056898.1); similar to Alpha/beta hydrolase fold [Shewanella amazonensis SB2B] (GB:ZP_00587466.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Peptidase S33, prolyl aminopeptidase; (InterPro:IPR002410) 0.239868979801061 2.84234830788795 0.0161720077682796 1 2.37751908247623 15.4982323786717 0.239868979801061 0.0388824386328495
AT1G28270_at 1.41082731773369 1.33452826013868 1.37501548428678 1.49815096601550 1.05713532542862 1.14688685558957 1.85259391199312 1.87794777943849 2.25173573871418 1.62637564085922 1.37578640867196 1.42565175160478 1.66957091766166 1.69129039928070 1.51157349494645 1.69439368797620 1.59058256139135 1.73437087426333 1.24860985564157 0.244864626141523 0.246317416962560 0.246187269645714 0.253302341655262 0.245991814096058 0.243889927207075 0.243810269216214 0.246698414258178 0.256157125770896 0.245830870145538 0.250913143794907 0.253863754200352 0.246274158771935 0.254943130961028 0.251488449102546 0.243726791076709 0.246143941045627 0.246542511891369 0.247049144180781 1 1 + 9883174 9883460 9883311.545 9883025 9883857 + gene protein_coding_gene FALSE TRUE AT1G28270.1 RALFL4 (RALF-LIKE 4) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL19 (RALF-LIKE 19) [Arabidopsis thaliana] (TAIR:AT2G33775.1); similar to rapid alkalinization factor preproprotein [Nicotiana attenuata] (GB:AAS13437.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.235965862963156 -2.84216433830631 0.0161773059955402 1 2.37723065486750 3.09191553276783 -0.235965862963156 0.0298146863859316
AT1G51520_at 1.91856829462167 2.09814526960189 2.75285599926262 2.58159030284996 2.34670037500561 2.05655387280028 1.89076996889829 2.07756918437150 2.09812015297360 1.90532625377529 2.35800378742338 1.94945134611296 2.44670935918808 1.90053530568319 2.43437119946121 2.34222750969995 1.85712577326464 1.93443869752999 2.19280514685529 0.20357695716777 0.201451832418059 0.204368163832172 0.202687995283241 0.20546707200029 0.205336357987417 0.198353324351155 0.198353324351155 0.206258347363435 0.208207833808343 0.198353324351155 0.199671876934645 0.202113162735365 0.20837051656818 0.202473247549818 0.205753319918732 0.200785871052696 0.206325918347623 0.204925741427582 1 1|0 +|/ 19111132 19112157 19111660.333 19110355 19113255 + gene protein_coding_gene FALSE TRUE AT1G51520.1|AT1G51520.2 nucleic acid binding / nucleotide binding|nucleic acid binding similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G21100.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G21100.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.26280132293349 2.84130465673037 0.0162020873969864 1 2.37588285698967 4.32448168684155 0.26280132293349 0.0735551068232039
AT2G39330_at 4.33318819839974 4.51866563856974 2.66830281384702 2.53983006917467 2.65433647277587 2.45927193028667 2.68167399183964 3.05398848470159 1.96331341870601 2.61637173459995 2.82162862888531 2.91900225153793 2.51268739578879 2.77680382435795 2.6019252691984 2.72338436614025 2.617688279234 3.11488056827187 2.12686173322138 0.227137115542504 0.245365044124486 0.220350013205165 0.217595787420529 0.216244226177122 0.220609952021856 0.224168879494145 0.226252961446322 0.235266183970444 0.223170165919119 0.215308915222018 0.222934680372545 0.215308915222018 0.229202281215724 0.218405304923238 0.220896059461115 0.219707598556172 0.217373214129654 0.218908391813550 2 2 - 16426986 16427533 16427268.818 16426674 16428930 - gene protein_coding_gene FALSE TRUE AT2G39330.1 jacalin lectin family protein Identical to Myrosinase-binding protein-like At2g39330 [Arabidopsis Thaliana] (GB:O80948); similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT2G39310.1); similar to myrosinase binding protein [Brassica napus] (GB:CAA70587.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.270479656386123 -2.83984765782456 0.0162441739644015 1 2.37359863563516 5.611915050834 -0.270479656386123 0.0825554882695253
AT3G05900_at 6.44431942141451 6.85389861882654 6.30958807714677 6.38525923177072 7.46091591118026 6.86815452161571 7.89990135514332 7.65044978341688 9.0563356099319 8.37076923956652 9.4109895394802 8.47368897848312 8.75603243259271 8.31689484414684 8.61589354525048 8.4666047037059 7.71568541080921 8.75982587283025 8.84268167798393 0.177270196890507 0.181886847290084 0.175527723883488 0.177948373584254 0.173142133206583 0.187472099718874 0.177783163774065 0.172663635309545 0.179965273436814 0.170729919283488 0.170916288016668 0.171958215953773 0.171280945794494 0.174771149353736 0.177915512327208 0.169756737802489 0.172552381095353 0.169699122922881 0.172079561449761 3 3 - 1761448 1761973 1761782.636 1761211 1763990 - gene protein_coding_gene FALSE TRUE AT3G05900.1 neurofilament protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to unnamed protein product [Asper (GB:BAE61223.1) -0.324153226260195 -2.83981796712986 0.0162450327395329 1 2.37355208838508 15.6445845776009 -0.324153226260195 0.132595720467978
AT4G39620_at 6.41656734907077 6.59248831954474 5.67340958246722 5.25276549881917 6.61722199969576 6.15325432303711 6.9742288604572 6.31298836687753 6.54812857935002 6.41765025560147 6.40265227358502 6.62169992197031 5.77781997990866 6.50391609566105 7.25889327795504 6.42724337896466 5.74561765012112 6.18330536420888 6.3374306015431 0.199361597560310 0.195119639995419 0.200173617606247 0.192306773439312 0.190782102836094 0.197957075028948 0.198758296954885 0.198760434492572 0.197330868083989 0.191633315938723 0.191497738708408 0.194849635524113 0.189737316122725 0.195429517061414 0.190447660266777 0.194346653959992 0.206152485231103 0.203278194599591 0.193136021090003 4 4 + 18396791 18397497 18396997.182 18395288 18397572 + gene protein_coding_gene FALSE TRUE AT4G39620.1 EMB2453 (EMBRYO DEFECTIVE 2453); binding similar to EMB2750 (EMBRYO DEFECTIVE 2750), binding [Arabidopsis thaliana] (TAIR:AT3G06430.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE94500.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.359582512842049 -2.83935434904338 0.0162584483441893 1 2.37282525934127 12.6488888566437 -0.359582512842049 0.160521109604313
AT2G26320_at 1.30645189332733 1.42468561465649 1.30237120833041 1.05055550203946 0.884132931764302 1.07192792347418 1.35269792878087 1.27193694657834 1.58016118664440 1.53590309877683 1.03564879539158 0.994781672936391 1.40872311586132 1.29520900999660 1.56639982197095 0.696198382177158 1.13748019173086 1.04718832068998 1.05392618391404 0.178465978843443 0.177602705427283 0.179396407121978 0.182054365902342 0.178247650220925 0.175882152470832 0.185378373311628 0.180236177050114 0.176909306736928 0.178186147810633 0.183003104043245 0.179598078408863 0.178941159849882 0.180574504103755 0.199671361905043 0.17901394159801 0.180291142774839 0.185618685699590 0.180101295263990 2 2|0 -|/ 11212484 11213263 11212914.1 11212467 11213365 - gene protein_coding_gene FALSE TRUE AT2G26320.1 MADS-box protein (AGL33) similar to AGL102, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G18750.1); similar to putative MADS600 protein [Asarum caudigerum] (GB:CAD12068.2); similar to MADS-box transcription factor 55 (OsMADS55) (GB:Q69TG5); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.251994681850537 -2.83908906439835 0.0162661298057000 1 2.37240936654293 2.47694523709698 -0.251994681850537 0.0597426352339911
AT4G30820_at 4.27943389015909 4.15114916582872 4.19651774539745 3.84548253274199 4.12809437627044 3.67145540215564 3.89935724622999 4.1351729064638 4.34744897074641 4.35597112859308 4.0496584296076 4.13789243439126 3.67677551412207 4.02692641397473 3.89017862579695 3.99624662039943 4.263377154608 3.76976392276508 4.54547140669929 0.184923846578854 0.185917567369124 0.184500011100968 0.182730539892196 0.189365075443361 0.193470936968810 0.185807268420544 0.185922400449451 0.185463618450555 0.189138620092755 0.182580153622331 0.187075829040667 0.188897162352852 0.191963190631643 0.182422268822740 0.182422268822740 0.194851134489339 0.189435506284489 0.185298175565148 4 4|0 +|/ 15007157 15008244 15008049.667 15006495 15008552 + gene protein_coding_gene FALSE TRUE AT4G30820.1|AT4G30820.2|AT4G30820.3 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related similar to Cdk-activating kinase assembly factor (MAT1) [Medicago truncatula] (GB:ABE84833.1); contains InterPro domain Cdk-activating kinase assembly factor (MAT1); (InterPro:IPR004575) -0.297917783625237 -2.83902535496754 0.0162679750874628 1 2.37230948808505 8.23465768722476 -0.297917783625237 0.109969515154297
AT2G41700_at 8.30308756574777 8.21175599504985 8.29106847183293 8.04817257672312 8.25026310729598 7.70423174682129 8.06260117053497 7.8593740333834 7.74136739654708 7.63659266860147 7.04947123109797 6.61695642343777 6.93892875263897 7.05139085198998 6.41784871945813 7.34147831837619 7.10601420350424 7.35392051146482 7.25808958183498 0.193419832600028 0.18854908797762 0.200859738283852 0.197909345288234 0.191052600858309 0.194167531253869 0.188333064820420 0.206312229478788 0.203115566110384 0.200151068407056 0.193464637976173 0.192817145097717 0.209927534461127 0.188385303214033 0.195203076460010 0.190521572703209 0.204378192715608 0.198387205332229 0.191445646534481 2 2|0 -|/ 17390516 17391087 17390842.5 17389968 17403188 - gene protein_coding_gene FALSE TRUE AT2G41700.1|AT2G41700.2 ATPase, coupled to transmembrane movement of substances / amino acid permease| similar to ATATH11 (ABC2 homolog 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61730.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001027849.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001017406.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001017398.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439)|similar to ATATH11 (ABC2 homolog 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61730.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001017406.1); similar to ABC3 [Homo sapiens] (GB:AAC50967.1); similar to PREDICTED: ATP-binding cassette, sub-family A member 3 isoform 2 [Pan troglodytes] (GB:XP_510744.2); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.298309735671249 -2.83853446882583 0.0162822001508445 1 2.37153992030874 15.3562448378356 -0.298309735671249 0.110374610194033
AT1G20100_at 9.5490597076778 9.56226030204817 9.78082976164028 9.66309505392907 9.5141918264751 9.24432209119031 8.80919143864202 8.91711482769504 8.40606894024698 8.30111633616913 8.66273699096288 9.05081481734106 8.4677868226744 8.39790802497385 8.39636080749995 8.63880628399441 8.56242770173553 8.3067772781333 8.50821066307945 0.174284281031159 0.173942794637836 0.175524050910021 0.174095755505617 0.17583645144009 0.176467944850859 0.182784556999 0.171934878834963 0.187849294405464 0.176429919457011 0.178803611055162 0.171934878834963 0.182743659748313 0.180630259569317 0.17786397161573 0.171934878834963 0.181776490347532 0.176925417386780 0.176699455382265 1 1 - 6969307 6969912 6969585.818 6969098 6970947 - gene protein_coding_gene FALSE TRUE AT1G20100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75860.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79676.1) 0.24826173768775 2.83831796585081 0.0162884779994373 1 2.37120050813605 17.8628002865354 0.24826173768775 0.0543162461241135
AT4G29770_at 1.9888709236208 2.08827932018594 2.48357034980902 2.62816065702498 2.49941255524129 1.88930947797036 2.02051897707178 1.86281529499595 2.47021644416168 2.45960356860429 2.29266892816043 2.09100253363153 2.20987348711730 2.30107605953091 2.68263720583433 2.4920196742463 2.99854853433756 2.53262197403687 1.76693792043112 0.196255229248540 0.199227934269278 0.206779706141812 0.200481608189673 0.19872410404623 0.202542143572411 0.198271704254017 0.214561858364431 0.204207424440221 0.206332373362601 0.197164083027601 0.205465502908579 0.201540110886891 0.199646441430840 0.200630005294086 0.199414128260755 0.200964960099645 0.205129459207384 0.197993413287374 4 4|0 +|/ 14576782 14577446 14577109.7 14575846 14577649 + gene protein_coding_gene FALSE TRUE AT4G29770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29760.1); contains domain Cysteine proteinases (SSF54001) 0.301397768127836 2.83823567987148 0.0162908646473028 1 2.37107150855353 4.52377154149548 0.301397768127836 0.113200054850456
AT1G31440_at 8.34071440352434 8.72454534345912 8.93911371981445 9.21928325964689 9.4911332967807 9.20655420830065 9.36481053710946 9.44235483816663 8.35618061771895 8.73884330116414 8.98049639442004 8.82678275196875 9.24560457697485 8.78452574800822 8.50921384083704 9.25691743419087 8.75665103359753 8.93051483587422 8.67298161641153 0.169208101152 0.159750134836838 0.16567287281859 0.167743645768898 0.159881001024189 0.167994283785947 0.162519835988094 0.169212199064097 0.173586690958896 0.158097708341143 0.160208667094455 0.156853633180197 0.161518775870608 0.164726186564972 0.169355318876907 0.161487222031209 0.188932641461428 0.168510521761013 0.158095318618391 1 1|0 -|/ 11256187 11256968 11256588.2 11255817 11258696 - gene protein_coding_gene FALSE TRUE AT1G31440.1 SH3 domain-containing protein 1 (SH3P1) similar to SH3 domain-containing protein 2 (SH3P2) [Arabidopsis thaliana] (TAIR:AT4G34660.1); similar to Os03g0266700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049658.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06881.1); contains InterPro domain Src homology-3; (InterPro:IPR001452) 0.283958994561592 2.83817634609383 0.0162925857994612 1 2.37097849120653 17.841400453558 0.283958994561592 0.0967899449714432
AT3G50120_at 1.09136756065502 1.07921938482845 1.19083234056173 0.99862721797217 0.756513735386584 0.685955983294099 0.57422007529698 0.820873082306179 0.975015546177515 1.19114786068136 1.93777927249139 1.69887325284258 1.42821140356260 1.6515720800884 0.80299890508438 0.794580421572734 1.23106572273059 1.84625755702156 0.66108678842037 0.201335319669483 0.197933016138629 0.202223606165387 0.204556780455666 0.201928363009780 0.197414563591203 0.213218859187698 0.200125652511621 0.216014773794448 0.203711130497734 0.203852456454672 0.197335645889636 0.203599523460843 0.204135528578362 0.202130972126891 0.205602208434466 0.212767603461493 0.197930844416850 0.200114094287541 3 3 - 18596153 18597126 18596571.545 18595983 18598295 - gene protein_coding_gene FALSE TRUE AT3G50120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50150.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50130.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50170.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) 0.24903144434826 2.83816003131036 0.0162930590900101 1 2.37095291459611 2.08286820187966 0.24903144434826 0.0555142772102776
AT4G15680_at 4.20052374360272 4.58820231198925 4.02883175784985 4.44833953687371 4.19609485784610 4.86828478397599 3.99563198073864 4.81705916259452 7.54157043254927 6.57636604982654 8.1718657597152 8.41268388220678 5.16496161895053 6.3621094578529 8.69088325194168 6.18000171892017 7.36576920990307 8.77102572212634 5.44939902998169 0.229046483382694 0.228253271430239 0.239894194455917 0.239358840183698 0.230230918420325 0.221784460465602 0.241371279626996 0.225983623294449 0.224949323396036 0.230849896871064 0.229084161854377 0.221784460465602 0.230726443144261 0.229402792614610 0.239933428965383 0.223197805734719 0.23253700534758 0.225277469766809 0.221784460465602 4 4 + 8931863 8932095 8931962.545 8931650 8932293 + gene protein_coding_gene FALSE TRUE AT4G15680.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S4 (AtGrxS4) (GRXS4) [Arabidopsis Thaliana] (GB:O23419); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15670.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.426250420660689 2.83783490232081 0.0163024939236691 1 2.37044321284257 11.3490498911778 0.426250420660689 0.208591061316596
AT1G14460_at 3.9006394989244 4.04253970831527 2.83844923200693 2.82982416785556 3.35977576769264 3.53683532908702 3.78700448655534 3.95236804658922 4.01475435683496 4.38831452597951 4.64166899319638 5.29073067516788 4.28698811523586 4.61507929221533 4.97111380371797 4.29129259483636 3.65598851030719 4.26051503639307 4.23152666990434 0.204810211134659 0.206794011866267 0.225741951617808 0.212312022249609 0.210243411222651 0.219410796671396 0.207108354065142 0.204810211134659 0.219103349116285 0.208487038065746 0.209685152278850 0.208697653468299 0.217034145950817 0.214011972020379 0.204810211134659 0.210810985418943 0.228843015715698 0.212737800222528 0.204810211134659 1 1 - 4948958 4949630 4949283.636 4948743 4952922 - gene protein_coding_gene FALSE TRUE AT1G14460.1 DNA polymerase-related similar to STI (STICHEL), ATP binding / DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT2G02480.1); similar to Os12g0209300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066394.1); similar to hypothetical protein LOC_Os11g13990 [Oryza sativa (japonica cultivar-group)] (GB:AAX95843.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III, subunits gamma and tau; (InterPro:IPR012763); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.244638267104019 -2.83720386974263 0.0163208212905438 1 2.36945395675936 7.88753151889831 -0.244638267104019 0.0486111925792717
AT4G33400_at 2.67717980512284 3.06797214845146 3.27716624186473 3.09601445517936 3.21242883043418 3.8253683099731 3.57164599659406 3.31930339999795 2.86906764730182 2.48357225440337 3.45961817174862 3.29503887588018 2.86403703186330 3.08192786994787 3.29081954820271 3.24828365178813 2.54220681213324 3.02012993519690 2.55536357604079 0.254342286829629 0.247554438877774 0.256636546565770 0.250461022118122 0.247554438877774 0.26174213310283 0.247554438877774 0.255124656809633 0.251717299373419 0.250398043582703 0.251154139117266 0.248085375919118 0.257182461130109 0.251125932980964 0.252884714309606 0.247554438877774 0.259523179084804 0.255390556629909 0.258284213388379 4 4|0 -|/ 16078203 16079051 16078651.8 16077920 16080524 - gene protein_coding_gene FALSE TRUE AT4G33400.1 dem protein-related / defective embryo and meristems protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19240.1); similar to DEM2 [Lycopersicon esculentum] (GB:AAQ90244.1); similar to dem [Solanum lycopersicum] (GB:CAA73973.1); similar to DEM2 [Lycopersicon esculentum] (GB:AAQ90245.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047) 0.328987849833862 2.83718143736068 0.0163214731835684 1 2.36941879019424 6.1240143466241 0.328987849833862 0.136801459469304
AT1G68470_at 1.68156374240530 1.82952664685361 1.40621689540456 1.34767868740478 1.10076598897105 1.76896746600518 1.79632381462157 1.98033454741978 1.73433711731447 2.25044629421595 1.91132296085166 2.34293834148461 1.61082426549481 1.97727954324249 2.28087894148210 1.61099651420463 1.70345154271986 1.80634424938012 2.35869416313408 0.187526035459464 0.183030364056147 0.188393464515184 0.190902486523402 0.190256616576227 0.187764201788785 0.186978724445141 0.195434591661004 0.191890746863748 0.182951721269023 0.197417491355856 0.191964317771818 0.188043745777896 0.190826755123433 0.182951721269023 0.191814556569531 0.187237957229963 0.183339913660628 0.187051656250848 1 1|0 -|/ 25680284 25681010 25680570.7 25680058 25681951 - gene protein_coding_gene FALSE TRUE AT1G68470.1 exostosin family protein similar to MUR3 (MURUS 3), catalytic [Arabidopsis thaliana] (TAIR:AT2G20370.1); similar to Os03g0144800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048945.1); similar to Xyloglucan galactosyltransferase KATAMARI1 homolog (GB:Q8H038); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.312508954204655 -2.837111430202 0.0163235077840256 1 2.36930904217951 3.62392075850858 -0.312508954204655 0.123060351319881
AT2G38040_at 9.67116573353116 9.71596817510503 9.34749963291342 9.2407600235834 9.96233022391402 9.802730957634 9.98295426306151 9.9312381776779 9.93797629968002 10.0588438461837 9.95749844839133 9.79406089722509 9.849898130788 9.70620173614031 9.64556896996546 9.58676621567472 9.59182355206961 9.93279863032584 9.99290997822865 0.0698224483652712 0.0692355090971275 0.0695150262295178 0.0701932953130448 0.0712404146249192 0.0693033529015298 0.0684234020983528 0.0729076809401224 0.0773973085042778 0.0691305933382384 0.0755547243762354 0.0681257262281662 0.0701091321742102 0.0708083789471905 0.0802771327476295 0.067823425470358 0.0710224676178189 0.0730170135528656 0.0705297820118913 2 2 + 15927255 15927797 15927484.091 15924171 15928248 + gene protein_coding_gene FALSE TRUE AT2G38040.1|AT2G38040.2 CAC3 (acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit); acetyl-CoA carboxylase encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38580.1); similar to chloroplast carboxyltransferase alpha subunit [Brassica napus] (GB:AAS46759.1); similar to carboxyl transferase alpha subunit [Glycine max] (GB:AAF80496.1); similar to alpha-carboxyltransferase aCT-1 precursor (GB:AAB03852.1); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763); contains InterPro domain Acetyl-CoA carboxylase, alpha subunit; (InterPro:IPR001095) -0.237750506645467 -2.83690573736069 0.0163294872509465 1 2.36898658475003 19.5841577887292 -0.237750506645467 0.0352739075965324
AT1G25230_at 7.4368700404312 7.95119776929466 5.87063972041394 5.64712173799456 7.50291909303374 7.25418512562946 7.14370579314091 7.11495761798903 7.68275767675407 7.79507844898799 8.56920041972834 8.45230467393379 8.35751283948838 8.31631986605126 8.77988237701726 8.25203711953195 7.07277890247273 8.47426410081086 8.6082338572718 0.168250272767940 0.161498383797588 0.171525768900276 0.167380705568425 0.153560937991925 0.170779716238089 0.160151393472045 0.162210452874657 0.177239014471597 0.158032001173522 0.161137367308363 0.1579228148412 0.153560937991925 0.165154632227607 0.161335091142470 0.153560937991925 0.169036151278491 0.166530518949208 0.161587933167868 1 0|1 /|- 8840463 8841499 8841096 8840389 8842304 - gene protein_coding_gene FALSE TRUE AT1G25230.1 purple acid phosphatase family protein similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G14700.1); similar to purple acid phosphatase 1 [Solanum tuberosum] (GB:AAT37529.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.293684421452326 -2.83668895289104 0.0163357915210290 1 2.36864674057903 15.1466883780996 -0.293684421452326 0.10628266618514
AT1G15120_at 10.4287050471206 10.5395966614326 10.5787546022057 10.6526900929570 10.1895931474670 9.99492036175097 9.87743065058935 10.1496469088731 10.1151463847631 9.67447340685915 10.1825315494343 10.4452996989402 9.97664381688726 10.3369051482426 10.2959932342368 10.3554050751766 9.89477093091416 9.93752698019463 9.53926671363281 0.0838208181047849 0.0861679473194758 0.0920263143422305 0.0851221025901508 0.0811255439677138 0.0869690600049278 0.0811255439677138 0.0870230154687729 0.0875294974576033 0.0845307324288387 0.0811255439677138 0.0811255439677138 0.084008214839868 0.0837383873716475 0.0821941795234303 0.0845403624253057 0.0914569860873169 0.0860832394725435 0.0852203181339452 1 1|0 +|/ 5203495 5203860 5203682.778 5202849 5204188 + gene protein_coding_gene FALSE TRUE AT1G15120.1 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative similar to ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative [Arabidopsis thaliana] (TAIR:AT2G01090.1); similar to Os11g0162200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065827.1); similar to ubiquinol--cytochrome-c reductase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95093.1); contains InterPro domain Ubiquinol-cytochrome C reductase hinge protein; (InterPro:IPR003422) 0.253491893296426 2.83507058161631 0.0163829320555575 1 2.36610972554600 20.2786322120520 0.253491893296426 0.0623387462368011
AT1G77080_at 4.3317987075341 4.66909444016671 4.94378528790991 5.10057299131528 5.88071591866882 4.78991969779403 4.67550840927843 4.94961274552118 4.43667110935085 4.71453550720946 4.63638729099415 4.96182530511346 4.81739314123814 4.94056056199523 4.57273171271393 5.07590050377862 4.45307502489890 4.67078615359055 4.19006165646131 0.182420008424092 0.186097203897335 0.191203815354641 0.182031998636018 0.187168659230574 0.187473663546163 0.186488969905643 0.185553883386351 0.197136285333235 0.189352244685249 0.190069713075053 0.183386530083266 0.184296054006914 0.185251832786138 0.186083262946524 0.184868922879728 0.187730435553129 0.185134256155909 0.182520033380359 1 1|0 +|/ 28960677 28963916 28962151.9 28960531 28964990 + gene protein_coding_gene FALSE TRUE AT1G77080.2|AT1G77080.3|AT1G77080.4 MAF1 (MADS AFFECTING FLOWERING 1); transcription factor MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering. similar to MAF3 (MADS AFFECTING FLOWERING 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65060.1); similar to 80C09_24 [Brassica rapa subsp. pekinensis] (GB:AAZ41835.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)|similar to MAF3 (MADS AFFECTING FLOWERING 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65060.1); similar to 80C09_24 [Brassica rapa subsp. pekinensis] (GB:AAZ41835.1); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.420618967873368 2.83481909510553 0.0163902696521328 1 2.36571549286456 9.52421196783902 0.420618967873368 0.205003711506359
AT2G37720_at 1.82761063991507 1.49651882803259 1.16077779479306 1.26723975235338 0.70375123971018 1.10309864527077 2.0531197792137 2.53874223609042 1.27073545849215 2.3115398929723 2.23800524234330 2.35225101312844 1.70728523380846 2.83538158969128 2.48006377427329 2.51933187553549 1.60622203497647 2.10962473017429 2.23123709450349 0.239486723568833 0.230139415711396 0.237379676538042 0.235172658111748 0.241792229519469 0.248190149602216 0.231626265477910 0.239757535611227 0.243556036421328 0.237166163347491 0.230906490101622 0.22983610832685 0.242021744021370 0.232654565093503 0.234575674226248 0.239983437768338 0.265459933822921 0.234417468745998 0.231236518505933 2 2 + 15827719 15828272 15828022.818 15825160 15828373 + gene protein_coding_gene FALSE TRUE AT2G37720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64020.1); similar to leaf senescence protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD28782.1); similar to Os09g0397400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063105.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.313548904014515 -2.83297347792587 0.0164442196830061 1 2.36282233806274 3.60328644878774 -0.313548904014515 0.124342329863537
AT2G28060_at 6.97445821177415 7.31669336898183 7.42506750458989 7.59365378099274 7.91488158375754 7.46224932502718 7.51343519191447 7.39024153337902 5.84683874834404 6.4441059177616 6.4136447434745 6.42287733479591 6.4258091093519 6.86048929552522 6.42133735174592 6.81492503552317 7.32420524524689 6.23953884319184 6.70683656664573 0.185441932360503 0.184200030932002 0.185752689478647 0.180042946924877 0.187480723242297 0.182159921581594 0.179562070328506 0.183142896916943 0.195403516264288 0.186609345496884 0.181941100819086 0.179562070328506 0.181836970768632 0.181163000538147 0.183917430043264 0.179562070328506 0.196692494999903 0.194622638254062 0.185770777886267 2 2 - 11957272 11957520 11957390.364 11957063 11959281 - gene protein_coding_gene FALSE TRUE AT2G28060.1 protein kinase-related similar to AMP-activated protein kinase [Arabidopsis thaliana] (TAIR:AT5G21170.2); similar to beta subunit 3 of SnRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAE96296.1); similar to Os09g0364900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063002.1); contains InterPro domain 5-AMP-activated protein kinase, beta subunit, complex-interacting region; (InterPro:IPR006828) 0.291507798842966 2.83257439339463 0.0164559088227850 1 2.36219675289259 13.9228086196058 0.291507798842966 0.104637109234539
AT4G29190_at 11.1276867028554 11.2823460728541 10.0659042313922 10.2137479067970 11.4314946333738 11.1325327164396 9.4550809550258 9.3907055112819 9.16055562067272 9.45929845002775 9.29809218248747 9.95952835145699 9.8958692143291 9.47737338168734 9.39737726194448 8.77288224563812 9.71011126259005 9.0651918311764 9.38264597526702 0.130590331291732 0.12999540835227 0.132666729760105 0.128321687228410 0.135825724723837 0.132023444718077 0.128778365489480 0.132057388646219 0.134158714414902 0.133698972562597 0.132423280020516 0.128321687228410 0.128321687228410 0.129199794618979 0.138572401062591 0.139493216989486 0.129701761892195 0.143732224387115 0.140125307968916 4 4 - 14392247 14392769 14392559.636 14391944 14393379 - gene protein_coding_gene FALSE TRUE AT4G29190.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G19810.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.254925797960469 2.83256786883187 0.0164560999954779 1 2.36218652534714 19.9030472904539 0.254925797960469 0.0645889755760113
AT1G64170_at 7.08202152785617 7.31431714973889 3.40483297909594 3.70420914812948 5.70567363157597 5.31455967723556 1.49441028569244 1.37669992047180 1.56683520350351 1.74423391046512 1.93181111279408 1.95368270026903 1.31379482941655 2.13775992808980 1.70046485800918 1.49413821777301 2.23463255004176 2.11116151137686 1.21648054798800 0.270208209501560 0.271458296721153 0.254826476248280 0.253414706694486 0.257329581816005 0.264993854834841 0.246385127826544 0.262379380956760 0.244290003150811 0.244625496306228 0.249057867809076 0.245659544235907 0.246566425222174 0.245619751579377 0.247817492140161 0.244290003150811 0.25811427498129 0.244466689796852 0.246055999090166 1 1 - 23818907 23819428 23819214.909 23818902 23821956 - gene protein_coding_gene FALSE TRUE AT1G64170.1 ATCHX16 (CATION/H+ EXCHANGER 16); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX18 (cation/hydrogen exchanger 18), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G41610.1); similar to ATCHX19 (CATION/H+ EXCHANGER 19), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G17630.1); similar to ATCHX17 (CATION/H+ EXCHANGER 17), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT4G23700.1); similar to cation/hydrogen exchanger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99860.2); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79743.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79742.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.282977065444246 2.83211205757945 0.0164694609726361 1 2.36147202362290 6.10902250703628 0.282977065444246 0.0964169523604248
AT2G20230_at 10.3114994195961 10.5577370022498 10.5571878638456 10.7385292214627 11.2292279616178 10.912876339723 10.6241848722922 10.6102256573440 10.5583690066092 10.5106085394969 10.6604830485623 10.6485224296399 10.8803736842938 10.8568064483022 10.4622008900873 10.7980127495874 10.6128978946097 10.8081821204898 10.4946632760251 0.0943340848735285 0.0885095075443653 0.0995612369902166 0.0953263702386375 0.0911414519577587 0.093257757531335 0.0908581107829075 0.0913222375588718 0.0934678949356453 0.0891254996289849 0.0903656466496518 0.0885063769104084 0.089432018474734 0.0929897971108957 0.0956740017267639 0.0875203304914311 0.0968754599471258 0.0904902807706817 0.0934698490287955 2 2|0 +|/ 8733538 8734434 8733987 8732622 8734823 + gene protein_coding_gene FALSE TRUE AT2G20230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28770.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE93060.1); similar to Os06g0731400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058664.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.264132454805629 2.83186839834794 0.0164766076870535 1 2.36109008073115 21.3112578000532 0.264132454805629 0.076181572774744
AT1G12130_at 1.05611633265796 0.886644210244237 1.24797049305696 1.38813587995101 1.17391110438530 1.05705259831260 1.11038801773518 1.01522937844496 1.19006952998374 0.696035997606607 1.22248202061346 0.98231319566719 1.30880062683466 1.54024750724699 1.10454445230542 1.67328110944756 1.26173375184514 1.63583287132121 1.27994849126700 0.179510486355003 0.177814050569554 0.179165449079049 0.177432200622516 0.180169246745310 0.183132093970403 0.174321720016162 0.174321720016162 0.195208144551274 0.180602502314193 0.177172018480448 0.180642870666925 0.177586533103743 0.178373111554416 0.183024421065582 0.179753812271223 0.191303491815005 0.174321720016162 0.177721882534647 1 1|0 +|/ 4120116 4120711 4120441.6 4118592 4120869 + gene protein_coding_gene FALSE TRUE AT1G12130.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G12160.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.242738068223487 2.8316232782542 0.0164838003781847 1 2.36070584955524 2.31518389261318 0.242738068223487 0.0461372344282613
AT4G16370_at 9.35291266024116 9.43414042285724 8.72043590487857 8.842386082205 9.91755489973682 9.65991592447 9.6866406841799 9.75401912344424 10.1318537129388 10.4496396488438 9.78469111165007 10.0907505687361 10.1847658389192 10.2105088735277 9.71688309599285 10.1409575687378 10.0596488638977 9.70553427995042 10.0424464383962 0.0913009172216322 0.0850051774921148 0.0897109952848775 0.0926592427772069 0.084490931935324 0.0910375558170558 0.08583224958384 0.0881885388241342 0.0884024678764167 0.086309477047145 0.0896008745689653 0.086240217872353 0.0840056673131342 0.0915511685511952 0.0906824133028685 0.0840056673131342 0.09202553410055 0.088542063318633 0.0870359073374656 4 4 - 9247628 9247959 9247819.182 9247321 9250112 - gene protein_coding_gene FALSE TRUE AT4G16370.1 ATOPT3 (OLIGOPEPTIDE TRANSPORTER); oligopeptide transporter oligopeptide transporter similar to ATOPT2 (oligopeptide transporter 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G09930.1); similar to ATOPT4 (oligopeptide transporter 4), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G64410.1); similar to oligopeptide transporter OPT family protein [Musa acuminata] (GB:ABF70152.1); similar to Probable oligopeptide transporter 3 (AtOPT3) (GB:O23482); similar to glutathione transporter GT1 [Brassica juncea] (GB:CAD91127.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.246558714037241 -2.83135348376479 0.0164917207325349 1 2.36028294264615 19.5183494420363 -0.246558714037241 0.0526005026233922
AT2G41460_at 4.64491849064364 4.59448228552434 4.9942275486231 4.2349853277295 5.21815198709111 4.79959420178913 4.73942024365921 4.20239336509011 3.35504683577679 3.62478980496231 3.35488513695516 4.20303745064395 4.02852191981834 4.00409794922326 3.90574405103546 4.08204794857899 4.42983577478395 3.89309293955819 3.50062605295044 0.275893561244644 0.2766591940656 0.290282846513537 0.285028040812450 0.280520650771092 0.293048997478137 0.275049416124399 0.271846693079648 0.288355680758799 0.271846693079648 0.285099942534549 0.271846693079648 0.276600142929762 0.271846693079648 0.271846693079648 0.273040483164476 0.279117845647216 0.274390747712365 0.271846693079648 2 2|0 +|/ 17294838 17295782 17295450.75 17292809 17296006 + gene protein_coding_gene FALSE TRUE AT2G41460.1 ARP (apurinic endonuclease-redox protein) apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. Identical to Apurinic endonuclease-redox protein (DNA-(apurinic or apyrimidinic site) lyase) (EC 4.2.99.18) (ARP) [Arabidopsis Thaliana] (GB:P45951); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G61030.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G60950.1); similar to putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza sativa (japonica cultivar-group)] (GB:BAD68138.1); similar to Os01g0801100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044538.1); similar to Os01g0801000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044537.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain Exodeoxyribonuclease III xth; (InterPro:IPR004808); contains InterPro domain AP endonuclease, family 1; (InterPro:IPR000097); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.380303250920183 2.83115503742859 0.0164975489482233 1 2.35997187633004 8.41909441171269 0.380303250920183 0.176700680149280
AT3G48600_at 2.93670562307842 2.53622018659998 2.42016589445729 2.39436689175951 2.58258162982894 2.37934404756519 2.98246682342619 2.64657869532107 3.34858778188905 3.11446169737937 2.66276109579198 3.34751623990705 3.05171658303227 3.28145988790119 3.19817038852187 3.05825006365729 2.36147462574887 2.48132655599276 3.03479500284435 0.241987506212797 0.252356156536982 0.234715833976305 0.235296387731973 0.228891844736490 0.229223581922348 0.228978065248817 0.259729151725006 0.248701349311798 0.235719345068863 0.229921622129642 0.228891844736490 0.23078971661021 0.228891844736490 0.228891844736490 0.233315364711438 0.234915276849764 0.237207628408005 0.260952315163703 3 3 - 18021680 18022277 18022001.125 18021106 18022361 - gene protein_coding_gene FALSE TRUE AT3G48600.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G31760.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.283495973419391 -2.82987672159757 0.0165351414824332 1 2.35796813180715 5.65794501939128 -0.283495973419391 0.0971545162733411
AT1G51650_at 9.45468644067633 9.5463402141654 9.59706187050529 9.68807874149624 9.44241078244967 9.0323475877185 9.39946937036928 9.3837735336749 9.21068710777716 9.4634261600179 9.96804684832196 10.0973867104902 9.82706791731848 9.82505835461104 9.9680591321633 9.76525080822081 9.53197623274615 9.5982885161711 9.2007153394362 0.126153299624495 0.124526824220785 0.122638974880243 0.127229800948171 0.123316256063363 0.126961523978185 0.126872829183669 0.121993009263099 0.130586065886963 0.125750676579705 0.118553562133157 0.121783221480032 0.121656876166068 0.131240803879415 0.122173995819302 0.120408267259898 0.136229952950228 0.133528359976111 0.123634207186022 1 1|0 +|/ 19156367 19156491 19156429.667 19156283 19157597 + gene protein_coding_gene FALSE TRUE AT1G51650.1 ATP synthase epsilon chain, mitochondrial Identical to ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q96253); similar to ATP synthase epsilon chain, mitochondrial (GB:Q06450); contains InterPro domain ATPase, F1 complex, epsilon subunit, mitochondrial; (InterPro:IPR006721) 0.262469817541291 2.82967735505412 0.0165410121403808 1 2.35765563131233 19.0001467430065 0.262469817541291 0.0744502539725901
AT1G11350_at 7.93422916929417 8.11989623079708 6.39277572602974 6.71319669581559 7.7541580115617 7.77562743094208 6.24963697169792 6.25818720391752 8.6964440248054 7.70907216062503 8.03340954007065 8.19205950660239 7.65323308739289 7.77280722363034 7.54529637006434 8.05000434433546 7.10022343773067 7.5248724481833 8.37788497878154 0.196401663261553 0.191970173453187 0.196684564072128 0.190756549309415 0.195886973574898 0.191459783805222 0.201581894344409 0.20093099752033 0.214325143693794 0.190756549309415 0.195518377270394 0.190756549309415 0.190756549309415 0.192980931973205 0.199884501009066 0.190948139489671 0.199336682972332 0.206173177802241 0.192838076425797 1 1|0 -|/ 3817743 3818415 3817913.4 3817591 3820805 - gene protein_coding_gene FALSE TRUE AT1G11350.1 S-locus lectin protein kinase family protein similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT1G11300.1); similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11330.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.254346702246065 -2.82925726414215 0.0165533891923972 1 2.35699715630978 15.1472744130846 -0.254346702246065 0.0642114189351498
AT4G13950_at 4.47186690557633 4.8977838966667 4.01301876987241 4.08106419384491 4.19740900562641 4.13737295487679 3.98598553461462 4.32029932133222 3.97947900023151 4.30626939715089 5.08221363882396 5.67494658256461 4.75282464206425 5.29068526325155 5.72917963384212 4.85064719938911 4.11432610918246 4.3995995163883 4.05191632205882 0.205717311024046 0.211154229684147 0.20848235383065 0.208166089389208 0.214415482161078 0.206468648198530 0.211528307636956 0.207124792486494 0.211922020188492 0.212811074913766 0.206387129083940 0.208890657896598 0.206790259057205 0.206581710286502 0.209791232956967 0.208570292656063 0.208507916462225 0.208998831868382 0.206356853984991 4 4 - 8058271 8058578 8058409 8058067 8058670 - gene protein_coding_gene FALSE TRUE AT4G13950.1 RALFL31 (RALF-LIKE 31) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL24 (RALF-LIKE 24) [Arabidopsis thaliana] (TAIR:AT3G23805.1); similar to rapid alkalinization factor 1 [Solanum chacoense] (GB:AAR00325.2); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.281240116607776 2.82881271269850 0.0165664970024483 1 2.35630034588723 8.81277893763565 0.281240116607776 0.0950077194180682
AT1G50170_at 8.53689309919379 8.30958430531927 8.24083636817035 8.06540521568455 8.24768055149507 7.87027533319773 8.80155138947175 8.70946009026311 7.99699936020386 8.15896454551177 7.90367813674328 8.03593613180016 7.9272814144283 8.05794275316844 8.0021402256267 8.00113697189713 8.10171388506477 8.18551557647514 8.0970319247211 0.120943212217036 0.113843167678696 0.122727262844316 0.118615002517959 0.115892687999481 0.122909602244832 0.119937416969806 0.117808406659086 0.121509061214394 0.117548148117483 0.113408278981852 0.113376713744600 0.120152065040918 0.121103572891536 0.117694607619932 0.114581558365661 0.126168406858275 0.115101669433392 0.115322206191938 1 1|0 +|/ 18585968 18587126 18586508.667 18585692 18587392 + gene protein_coding_gene FALSE TRUE AT1G50170.1 sirohydrochlorin ferrochelatase similar to Cobalamin (vitamin B12) biosynthesis CbiX protein [Medicago truncatula] (GB:ABE87912.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CbiX; (InterPro:IPR002762) -0.270368330251734 -2.82876544746949 0.0165678912502009 1 2.35622626051888 16.4033358342892 -0.270368330251734 0.0835982791929794
AT1G74340_at 7.64555348534701 8.27530360006044 8.28709714088982 8.14586612961911 8.31068523244273 7.7481211098389 8.01731819992926 7.91017699259449 7.12502797764245 7.27849388532842 7.5598581258808 8.08471110884336 7.69164629561616 7.68159871699663 7.8451597091407 7.83669826542859 7.60075329049312 7.60934188090896 7.2339115912089 0.183711941168624 0.180351697227221 0.186773402531092 0.185160559730576 0.189510282550278 0.192582484646222 0.180781074738928 0.186213172320738 0.213010963515770 0.190986711531018 0.185930140273845 0.185327975503778 0.196138008180366 0.18976666694808 0.185284444939897 0.185914659478003 0.212072394163933 0.190462923918844 0.185303680991212 1 1|0 -|/ 27951973 27952285 27952127.222 27951784 27952332 - gene protein_coding_gene FALSE TRUE AT1G74340.1 dolichol phosphate-mannose biosynthesis regulatory protein-related similar to putative dolichol-phosphate (beta-D) mannosyltransferase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD10255.1); contains InterPro domain Dolichol phosphate-mannose biosynthesis regulatory; (InterPro:IPR009914) 0.34354871990923 2.82755991082668 0.0166034923052934 1 2.35433667678861 15.5181146074519 0.34354871990923 0.149318102069609
AT2G23780_at 6.82325844148204 7.12196509988176 6.80687451469309 7.11036598079827 7.49104462217768 7.30358553528157 6.66961044431099 7.16713655561593 7.24784953113616 6.7978822303826 7.40540519111349 7.15737895352832 7.3594330736476 7.78198562127011 7.18383440581438 7.25208168153872 6.85741166621464 7.37712241821882 6.70948241605218 0.169746178074532 0.171803500982901 0.180907973124110 0.179504382018602 0.18874634072335 0.17752822892411 0.190457375027154 0.169663717027331 0.176881044874082 0.171216693266596 0.174174188748244 0.174522828675113 0.177687511923496 0.176862685419204 0.174097463942387 0.177880967374291 0.198015806223004 0.179229636213698 0.176850784459630 2 2 - 10130710 10131190 10130997.182 10130386 10131716 - gene protein_coding_gene FALSE TRUE AT2G23780.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G19310.1); similar to putative zinc finger protein [Capsicum chinense] (GB:CAJ13712.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.305450964238126 2.82699050121721 0.0166203342850570 1 2.35344418657009 14.1693483254178 0.305450964238126 0.117881336016341
AT1G10540_at 1.01186652921488 1.16689318619847 1.91439172476291 1.76034427147131 1.86898664545937 1.61709432670259 1.71618584994387 1.14330927502898 1.74630978839962 1.50919029903 1.11939795945568 1.27774115859585 1.55594620225312 1.79189704206024 1.68944765771515 1.61064501010717 1.94773818630793 1.46385706325209 1.19645471752446 0.246728209132794 0.249462218970814 0.258997989590052 0.251894410431862 0.250757850442208 0.258895757212118 0.258870010331970 0.255623491190986 0.248662284296773 0.246991729723269 0.246729068921890 0.256767680015919 0.254023004925107 0.25168101953484 0.254991942562038 0.251516127909911 0.255279153355186 0.247738860209854 0.253003921888076 1 0|1 /|- 3475030 3475804 3475362.75 3474865 3477928 - gene protein_coding_gene FALSE TRUE AT1G10540.1 xanthine/uracil permease family protein Identical to Nucleobase-ascorbate transporter 8 (AtNAT8) (NAT8) [Arabidopsis Thaliana] (GB:Q8VZQ5;GB:Q9XIJ8); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to permease [Arabidopsis thaliana] (TAIR:AT5G62890.3); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT1G60030.1); similar to Xanthine/uracil/vitamin C permease; Thioredoxin-related [Medicago truncatula] (GB:ABE83225.1); similar to root uracil permease 1 [Oryza sativa (japonica cultivar-group)] (GB:CAJ84113.1); similar to putative permease I [Lycopersicon esculentum] (GB:AAX73299.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.301869690993103 2.82683270141323 0.0166250047038457 1 2.35319685347777 3.04541833607434 0.301869690993103 0.114713339671114
AT3G55030_at 6.79385312554894 7.25312185038712 6.31029414413826 6.20810768464195 7.46906334718635 7.48750924686194 7.9303816909821 7.48948529055844 6.91856498500847 7.0630184539083 7.17902685585853 7.01750202526405 6.70350016962805 7.32384843388452 7.02096625429898 6.80436370084136 6.63299860724634 6.77522073018084 7.1116185185883 0.194994674659571 0.185889323387619 0.183544264115916 0.189969810959938 0.189663286937204 0.202198877844817 0.191601338671818 0.1888657638784 0.19138661428278 0.186724162562071 0.182119018244748 0.184876543948292 0.181501447149419 0.192453981455643 0.183201728710477 0.188653059820362 0.203049823189246 0.181879384478466 0.197408075085350 3 0|3 /|+ 20408341 20409134 20408820.333 20407737 20409630 + gene protein_coding_gene FALSE TRUE AT3G55030.1 PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase Encodes a phosphatidylglycerolphosphate synthase. similar to PGPS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE+SYNTHASE+1), CDP-alcohol phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39290.1); similar to phosphatidylglycerolphosphate synthase [Vigna unguiculata] (GB:ABA55724.1); similar to Os03g0283600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049756.1); contains InterPro domain CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; (InterPro:IPR004570); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) -0.298427927840025 -2.82657618607914 0.0166325996169717 1 2.35279479665158 14.0993498806975 -0.298427927840025 0.111630281629704
AT1G01070_at 5.17047329050643 5.97689344769357 7.24159055293617 7.71438975204198 8.3183856598349 7.60955495132185 8.10170970068446 8.30316271596125 6.35337112521783 7.5176404874561 7.45872937477566 6.35717510530586 6.93887300086059 6.53691556189969 6.23808868212486 7.3862848759284 8.03165711263538 7.3492295385161 7.21533026464708 0.259722701082424 0.261911343784951 0.265325375048606 0.257271587706802 0.249834972955354 0.269318509916447 0.248510085063791 0.251387573643106 0.276416509692570 0.263873306329982 0.252048294993348 0.252637287280586 0.247631944211149 0.257775925298781 0.262645043626020 0.247631944211149 0.260623160596148 0.254303052620733 0.261051283191682 1 1|0 -|/ 38900 39526 39213.9 38752 40944 - gene protein_coding_gene FALSE TRUE AT1G01070.1|AT1G01070.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G11460.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os02g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045606.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G11460.1); similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G11450.2); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os02g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045606.1); similar to H0523F07.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67024.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.420629485527223 2.82532955663499 0.0166695592639176 1 2.35084088267218 14.3374699000123 0.420629485527223 0.205991528053268
AT1G26180_at 7.21558469254234 7.43284020111441 6.66738837401586 7.10097042604521 7.77390276157539 7.53086501906903 7.58760373453255 7.4989204350609 7.3502393329247 7.48061042806796 7.10762056241108 7.25059564998207 6.89747321975597 7.14218088425686 7.426514565285 7.34309930182186 6.64718515685639 6.84995263096413 7.60746418789673 0.239736598836437 0.218429524378363 0.249306536431299 0.234740895306239 0.218429524378363 0.234561561313662 0.218429524378363 0.231152154132133 0.242453221098203 0.225179773570127 0.224253589773205 0.227683571479379 0.244155417193838 0.218429524378363 0.218429524378363 0.231378551836149 0.250607201607669 0.255654340230585 0.224437731117442 1 1 + 9055089 9056472 9055977.857 9054731 9056839 + gene protein_coding_gene FALSE TRUE AT1G26180.1 similar to Os02g0326000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046704.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54160.1) -0.280907928591319 -2.82433932428489 0.0166989758233674 1 2.34928886698242 14.6322673201844 -0.280907928591319 0.0951211175969193
AT2G35360_at 3.18939253040726 3.62156922869507 3.88583824134585 3.86992233511643 4.03785844423183 3.93399285779515 3.6824228640117 4.02242710047093 3.45888868105705 3.08851820242268 3.39842311424467 3.77967369881489 3.46404426116018 4.04063387369467 3.52364967368336 3.80575230314023 2.90557660952670 3.07401694586432 3.16292398188632 0.216359856719046 0.210067001060115 0.224004407648981 0.216622588093319 0.216712393008708 0.234471249430685 0.220151296432188 0.211508432232974 0.209977904064597 0.215685602358005 0.211632095598384 0.211079323117029 0.214059823905191 0.225552130176208 0.209977904064597 0.211830841156321 0.221408997303420 0.219608052198268 0.215419669696413 2 2|0 -|/ 14896397 14897769 14897014.833 14896128 14897922 - gene protein_coding_gene FALSE TRUE AT2G35360.1 ubiquitin family protein similar to hypothetical protein MtrDRAFT_AC146791g21v2 [Medicago truncatula] (GB:ABE88023.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.282572196810092 2.82338166499021 0.0167274740902214 1 2.34778793136248 7.14830208282835 0.282572196810092 0.0968829430602006
AT4G14965_at 7.19997827456288 7.23614912224346 7.4148103389737 7.50746314155635 7.61600007909057 7.55291640548452 7.01569042794268 7.19793881211419 5.10559402333165 6.36769442051453 6.02037701488483 5.96489689338927 6.36200012269059 5.97416914739141 6.28716528805006 6.11796418586022 6.44699112370889 5.84683996569103 6.56470676205781 0.219861647015290 0.217215308431558 0.220759951753785 0.217129301813215 0.214589313894348 0.214178347036312 0.216964605382760 0.215037852260031 0.243619305136257 0.213619042293196 0.211733597348044 0.211230249368226 0.216984209312292 0.218510386029414 0.217074743791053 0.211961985491425 0.225076122416057 0.221681302901155 0.221674545378878 4 0|4 /|+ 8551928 8553336 8552809.889 8551240 8553549 + gene protein_coding_gene FALSE TRUE AT4G14965.1 ATMAPR4 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 4); heme binding / transition metal ion binding similar to ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2), heme binding / transition metal ion binding [Arabidopsis thaliana] (TAIR:AT2G24940.1); similar to Os03g0205500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049314.1); similar to fiber protein Fb38 [Gossypium barbadense] (GB:AAR07602.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.237621865567053 2.82313988420869 0.0167346767448288 1 2.34740899360374 13.4127260934175 0.237621865567053 0.0375520228648426
AT4G36540_at 9.64105013232665 9.96006061698484 9.11274894328262 9.11660734092256 10.438155405551 10.1269821948080 10.3427998234284 10.3259800620898 10.3810391291545 10.3821822324979 10.5122389134679 10.6152600740380 10.5278103092949 10.3246864503044 10.5052571421159 10.6212447760648 9.80292859427997 10.2970000878029 10.9170577813397 0.0890381586338943 0.087974405460376 0.0964586756529458 0.0922987192671185 0.0897849369241372 0.0962681571662158 0.088174781469512 0.087235405950486 0.096397777693783 0.0869808905279619 0.0871005367754614 0.0862400664837497 0.0858740709616164 0.087943402276099 0.0906817137865315 0.0865895947867338 0.0982653487476358 0.0908422977390065 0.0855495011881783 4 4|0 +|/ 17244228 17244931 17244656.6 17243586 17245299 + gene protein_coding_gene FALSE TRUE AT4G36540.1|AT4G36540.2 BEE2 (BR ENHANCED EXPRESSION 2); DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G18300.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G18300.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.264069470904666 -2.8220948821928 0.0167658430391583 1 2.34577120475006 20.3634962354668 -0.264069470904666 0.0771781598956435
AT4G23580_at 1.84364006583240 1.67063757458493 2.10838232712112 2.35292464112687 1.58385494798638 1.58948146350258 1.9524397449655 1.88301342504278 2.50153433822239 2.63236737873591 1.9273118803907 2.10058221705725 2.01566441675387 2.09774186696349 1.85811131149313 1.80730312707019 2.07782598068920 2.32804626633213 2.63621640757595 0.181205787503143 0.179755533997436 0.189139240165582 0.186662825592320 0.179747450653638 0.187316854325658 0.182972802628118 0.181427050370283 0.185435126373846 0.179950842810144 0.185489703982728 0.179747450653638 0.181220643538825 0.188871111938402 0.179747450653638 0.180234279202260 0.184898514900977 0.188176432724035 0.186742377513420 4 4 - 12304258 12304831 12304502.273 12304256 12305407 - gene protein_coding_gene FALSE TRUE AT4G23580.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G33900.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch motif; (InterPro:IPR006651); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.246118924586585 -2.82181070729843 0.0167743283395529 1 2.34532583474018 4.18135315286457 -0.246118924586585 0.0532216885873429
AT3G56740_at 5.2634694339097 5.49988921882814 5.44324266441922 5.89427167532712 6.34269999719966 5.32649341885905 5.63054388938042 5.19745020687559 4.20319224552795 4.11060877304452 4.36508943063103 4.54672210963973 4.68038185367777 4.82960673441253 4.40924672238858 4.66834729010757 5.48543169638181 4.26022028363829 4.15659858483948 0.251360743477847 0.249694539214757 0.257390527394754 0.256371032820506 0.26039705647772 0.266750085920402 0.249694539214757 0.268252964629347 0.269469709711007 0.253721024996841 0.263117430512756 0.249694539214757 0.250173707694820 0.253117014009877 0.268710524606934 0.249694539214757 0.258226415985315 0.249694539214757 0.251760956401654 3 3|0 +|/ 21027641 21028805 21028291.4 21026350 21029136 + gene protein_coding_gene FALSE TRUE AT3G56740.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G41160.1); similar to UBA/TS-N domain, putative [Medicago truncatula] (GB:ABD33028.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.426334824504239 2.82008218573398 0.0168260335193830 1 2.34261688070502 9.98097287955668 0.426334824504239 0.210499316218346
AT3G03380_at 7.51284756961461 7.71676562501056 7.83616646854453 7.70829399411787 8.47289643714965 8.00993156289223 7.23667418689489 7.20796237952472 6.80092091859236 6.42367414001348 6.29795316285237 6.36390562513269 7.03928378379224 6.72363298321928 6.54517419639378 6.82313699934479 6.72436092662402 6.56806306408651 6.79179263185515 0.170258942905097 0.169385764510878 0.168908734877450 0.166110838517401 0.185073583002890 0.175676534487569 0.166406382866275 0.170202394691860 0.172194942551906 0.176186543889713 0.168486727552150 0.170039341824419 0.166831343654313 0.167099730925886 0.171635898028936 0.164943426198985 0.170276294842543 0.168647230076516 0.170559928187392 3 3|0 +|/ 804916 808274 806441.059 799622 808529 + gene protein_coding_gene FALSE TRUE AT3G03380.1 DEGP7 (DEGP PROTEASE 7); serine-type peptidase/ trypsin Encodes a putative DegP protease. Identical to Protease Do-like 7 (EC 3.4.21.-) (DEGP7) [Arabidopsis Thaliana] (GB:Q8RY22;GB:Q9SRP2;GB:Q9SRP3); similar to Os02g0712000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047905.1); similar to serine protease [Schizosaccharomyces pombe 972h-] (GB:NP_595209.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.27590964397096 2.82001399887103 0.0168280764512873 1 2.34251001952160 14.3666013143858 0.27590964397096 0.0904357223920808
AT1G28320_at 7.36663942593653 7.48216876663695 7.61046261903016 7.34358487604868 8.56747679850637 7.35733427003882 6.85888635993524 5.8405319741049 6.11173986850345 6.11005520441326 6.31718003531565 6.22664881148842 6.64055941382346 6.30283514353221 6.03326941065714 6.83964437474506 5.94819378990635 6.16775770022206 6.03790609392822 0.23973192156826 0.23973192156826 0.245796973173116 0.243491557269713 0.24327429688394 0.245805132991611 0.240775682523121 0.243593489344322 0.254623867258193 0.247385333800188 0.23973192156826 0.241446931140856 0.241085099345893 0.248895062998773 0.254864330651393 0.23973192156826 0.254366438514664 0.248136387117558 0.249194690149632 1 1 - 9920779 9921663 9921162.727 9920494 9924475 - gene protein_coding_gene FALSE TRUE AT1G28320.1 protease-related similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to putative protease/hydrolase [Lycopersicon esculentum] (GB:ABH07902.1); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.527801019299459 2.81975073876692 0.0168359662563265 1 2.34209744451583 13.5014247065678 0.527801019299459 0.278293280340668
AT2G05910_at 1.84815284373872 2.09942698250618 2.20799667933321 2.74400511333275 2.32849404927672 2.42823916661255 2.08464776079992 2.01263946795099 2.47739129803825 1.76283275313775 1.98568263460883 1.77086501096411 2.24784017663775 2.01452113687034 2.28817607580869 1.92907934351208 2.12259118560412 2.02223799494874 1.40983205592777 0.193297540174886 0.195005221502924 0.185433931920106 0.179645102116323 0.181857858951689 0.190420357351686 0.191359259610674 0.181790060239547 0.184111827657987 0.181623043961698 0.185304969570888 0.183595016776918 0.183378642080312 0.184305895901784 0.186284391169734 0.192133855030701 0.184115635947980 0.185055562266943 0.183165854517681 2 2 - 2258535 2259332 2258961.364 2258290 2259388 - gene protein_coding_gene FALSE TRUE AT2G05910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20640.1); similar to Os03g0179700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049157.1); similar to Protein of unknown function DUF567 [Medicago truncatula] (GB:ABE88870.1); similar to Os04g0446000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052906.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.290119573778965 2.81911560428086 0.0168550162125918 1 2.34110208551714 4.18468837322918 0.290119573778965 0.104634124368637
AT1G32240_at 3.17166257794346 2.81607147453867 3.37775895763518 2.94359779773913 3.32382421799593 3.34043575246842 3.87276598256586 3.70554001495718 3.35151686733219 3.54002301330023 3.09392354586207 3.18671726632728 3.32924252318473 3.09824907149444 2.79212487368365 3.69364994022449 3.23103117505506 3.13488881361766 3.97838696693702 0.200457898880763 0.201133896726691 0.200867781077883 0.200170061434588 0.198983925477384 0.204865505386185 0.211334989910284 0.1990552939306 0.20870486644727 0.197551160114428 0.196934496803524 0.196243828719676 0.197286168721003 0.198096482707035 0.201093495724585 0.206554564276683 0.199861916304985 0.205373595745259 0.203382095783661 1 1|0 -|/ 11625865 11629719 11628177.444 11625680 11630606 - gene protein_coding_gene FALSE TRUE AT1G32240.1 KAN2 (KANADI 2); DNA binding / transcription factor Encodes a member of the KANADI family of putative transcription factors. Together with KAN1, this gene appears to be involved in the development of the carpel and the outer integument of the ovule. similar to KAN3 (KANADI 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G17695.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE89247.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.286718189525133 -2.81907312643239 0.0168562910433448 1 2.34103551626452 6.72810077216597 -0.286718189525133 0.101378342633775
AT1G20770_at 8.19969198361435 7.88675363517031 7.44630523774055 7.65446693240939 7.3962629729873 6.73912487853555 7.79746769568426 7.63872870293833 6.44137662755864 6.69096871623654 6.707542720375 6.78028181225723 5.94783695781526 6.7173000726713 6.90219668250641 5.6951397282678 6.10209771282862 5.44124679807644 5.9527283944178 0.202950552151122 0.202950552151122 0.218553882263898 0.203511042278711 0.206023901889318 0.219662021729685 0.204043140267062 0.20826314413536 0.223257541605160 0.213939857821058 0.211569139043491 0.212014395483968 0.208290570914776 0.222832741185963 0.213675196856070 0.215199799085875 0.224027477047760 0.231426319728319 0.202950552151122 1 1 - 7215343 7216158 7215796.182 7215004 7216730 - gene protein_coding_gene FALSE TRUE AT1G20770.1 similar to Os04g0509200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053277.1); similar to hypothetical protein LOC503608 [Danio rerio] (GB:NP_001013313.1) -0.323303217202423 -2.81904371846203 0.0168571736817908 1 2.34098942953233 13.9190485332204 -0.323303217202423 0.133856439409345
AT3G20040_at 1.26416418079207 1.35507543198544 1.08463308341388 1.02282736487033 0.882517144877379 0.892165857387954 1.07987790758128 1.47137202840836 1.53178146240056 1.44014239457334 1.15150763890529 1.65466013337308 1.25085304804991 1.49565314080614 1.43678404799037 1.36221874176189 1.16240236045559 1.47452571719443 1.73158137952679 0.211433017190716 0.207755947829406 0.207165340758366 0.204675955354702 0.207536086032894 0.208845533840792 0.204675955354702 0.207283880901795 0.216166943271312 0.221714214573053 0.212100492547559 0.210487181560692 0.204723083200916 0.208407896207041 0.214487007080135 0.204675955354702 0.213609569947991 0.213357596654961 0.213791166310308 3 3|0 +|/ 6997047 6998044 6997620.2 6994900 6998177 + gene protein_coding_gene FALSE TRUE AT3G20040.1 ATP binding / hexokinase Identical to Hexokinase-4 (EC 2.7.1.1) [Arabidopsis Thaliana] (GB:Q56XE8;GB:Q9LJZ7); similar to hexokinase, putative [Arabidopsis thaliana] (TAIR:AT1G50460.1); similar to hexokinase 6 [Nicotiana tabacum] (GB:AAS60198.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) -0.258172999910439 -2.81899570671688 0.0168586147853362 1 2.34091418793179 2.60228446611491 -0.258172999910439 0.070389981151058
AT1G70580_at 9.9881534863864 10.1006350393127 10.6248528471542 10.5627680500861 10.6349043039725 10.0320926048972 11.6457597853061 11.6584763631732 10.4507991406488 10.7890103144529 10.3135893029897 9.8621464708356 10.6263154113738 10.536645136154 9.5091003491385 10.4556080587562 10.7615192610713 10.5756146466741 10.3496498974132 0.139123488590284 0.123814861262340 0.133394986759958 0.129159194297744 0.122227763465462 0.131182234376622 0.130702650584402 0.127917524069948 0.136898036730510 0.125083754182318 0.122227763465462 0.127252389615107 0.122227763465462 0.127949393188281 0.130627730315634 0.122709959147208 0.128267129875828 0.130005186763777 0.126739062627619 1 1|0 +|/ 26618593 26619390 26619015.778 26616295 26619732 + gene protein_coding_gene FALSE TRUE AT1G70580.1|AT1G70580.2|AT1G70580.3|AT1G70580.4 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); alanine transaminase Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 similar to GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G23310.1); similar to AlaT1 [Vitis vinifera] (GB:AAZ43369.1); similar to AlaT1 [Vitis labrusca] (GB:AAZ43368.1); similar to alanine aminotransferase [Oryza sativa (indica cultivar-group)] (GB:AAO84040.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.29217708578229 -2.81799093786838 0.0168888018286498 1 2.33933958087504 21.0858988669339 -0.29217708578229 0.106685116322826
AT3G62760_at 0.746125844552122 1.01988371967767 0.554025795324008 0.636451310843268 0.351779189069679 0.636980208969776 0.88941632430881 0.954023278780878 1.24970384521268 0.7660516458702 0.782937171364147 0.781186106097354 0.458474895277876 0.883944025591245 1.05296795222287 0.741033609880431 0.968444462639846 1.19598212233272 1.03570155103804 0.206966391928012 0.203386479595607 0.209277035226359 0.208294962387469 0.20674339186079 0.203128220215319 0.201754222668663 0.207224728970065 0.201754222668663 0.211095318932638 0.203994815322244 0.208387928818486 0.211186105019482 0.204740579498445 0.210336000269664 0.204425968669896 0.212564224306449 0.205014246596841 0.206718240670895 3 3|0 -|/ 23228421 23229128 23228636.889 23228401 23229222 - gene protein_coding_gene FALSE TRUE AT3G62760.1 ATGSTF13 (Arabidopsis thaliana Glutathione S-transferase (class phi) 13); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF6 (EARLY RESPONSIVE TO DEHYDRATION 11), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G02930.1); similar to glutathione S-transferase GST 21 [Glycine max] (GB:AAG34811.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.258292109988008 -2.81696043589306 0.0169198180861456 1 2.33772467910618 1.6612225292155 -0.258292109988008 0.0707730147229243
AT3G56690_at 5.30696993933615 5.70755501059335 5.27231308687855 4.7573835763673 4.67506384648690 5.46063484114315 5.32010860099263 4.99897621982672 4.02248236991433 4.65009370788762 3.83761175714524 3.69881062424039 4.12114380816664 3.78070539077382 3.83745295343121 4.22016491367158 4.4097390641057 3.9172307813743 4.72499442898284 0.226859311618342 0.216036398564038 0.223572329947597 0.218015668262415 0.228243529788593 0.228748100033552 0.217134650838788 0.218666463975867 0.228209041230809 0.23071479790441 0.223187452573041 0.214497838491956 0.222707286876964 0.224779036666435 0.233625026378922 0.217151210154405 0.214918246978565 0.221360636800134 0.216456990836221 3 3|0 -|/ 21004866 21005758 21005378.625 21004672 21009674 - gene protein_coding_gene FALSE TRUE AT3G56690.1 CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined. similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to ATPase, AAA family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92097.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.39002651447478 -2.81616009147072 0.0169439462687541 1 2.33647048061098 9.40923276380736 -0.39002651447478 0.185246800684123
AT1G17250_at 4.32619073604706 4.94104851657678 3.61652308398209 4.19236399123532 5.01542624228378 4.47460181902605 2.72434765793399 2.94436505111401 4.78362376323685 4.3307043050158 3.29215926412424 3.14210270916626 3.39029534247799 3.21771368392336 2.88113469317534 2.88124990537418 2.71373789838853 3.51509244789185 4.3200959300205 0.284135246654446 0.285499428766476 0.279943241500392 0.290619422813264 0.292698982073366 0.283975686211597 0.28877692652353 0.283177717612924 0.285041093690358 0.283969381160964 0.278300911064766 0.281871377571353 0.285240103296673 0.278265762278827 0.284152163432984 0.284467328903942 0.288929151099608 0.28370683913262 0.278265762278827 1 1 - 5901181 5901720 5901418.455 5901162 5903432 - gene protein_coding_gene FALSE TRUE AT1G17250.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72300.1); similar to leucine-rich receptor-like protein kinase [Daucus carota] (GB:AAL99366.1); similar to leucine-rich receptor-like protein kinase [Daucus carota] (GB:AAL99365.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.379107397989322 -2.81542369598277 0.0169661769271413 1 2.33531651259373 7.83302192518635 -0.379107397989322 0.177373985745841
AT1G16820_at 3.02280616782046 3.09128763051514 2.80522581211289 2.72950932270825 3.01206274745236 3.16496687661129 2.91285599949885 2.91791432236623 3.70227364462113 3.72270733317181 3.05226240424084 2.97372393139038 3.03479351198107 3.23155424815543 3.50099047649627 3.12650419992622 3.40669291546178 3.70977944809328 3.57052687047389 0.217941546631172 0.214133195789156 0.228455974624864 0.221662960807204 0.217255016202639 0.231804164014693 0.219683723404628 0.219262234006151 0.220056146765633 0.224880120614812 0.223777750383201 0.214133195789156 0.214133195789156 0.216233454116281 0.214669334230827 0.215541740457053 0.218472906905543 0.219619182858259 0.215140521214923 1 0|1 /|- 5757321 5757515 5757388.143 5756828 5758457 - gene protein_coding_gene FALSE TRUE AT1G16820.1 vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related similar to VHA-A, ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT1G78900.2); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V-ATPase 69 kDa subunit) (GB:P09469); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V-ATPase 69 kDa subunit) (Tonoplast ATPase 70 kDa subunit) (BN59) (GB:Q39291); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793) -0.234453240558212 -2.81464154437695 0.0169898208004258 1 2.33409086127859 6.41693207224757 -0.234453240558212 0.0318288679124328
AT2G38830_at 2.24516055038997 2.55586160697088 2.96277328661318 2.88462121983680 2.59623040256890 2.60755894033932 2.34253174192934 2.54873495520551 2.73493783578637 2.48348230793175 2.89199773647650 2.5429857121064 2.95031370520341 2.57720147966412 2.59933885174981 2.24704489803897 3.09635209028869 2.42746568206326 2.27446958730779 0.163469645843724 0.163606666180769 0.165620848531906 0.164869251716690 0.162454874875052 0.159971520444270 0.165588854116395 0.159971520444270 0.164670529720576 0.165054768685845 0.161272765142579 0.166255222864241 0.168666951393279 0.160585646527022 0.159971520444270 0.160940630954394 0.168698477930973 0.174434557403474 0.162822235062646 2 2 + 16233449 16233801 16233639.545 16232855 16233950 + gene protein_coding_gene FALSE TRUE AT2G38830.1 tumor susceptibility protein-related similar to ATELC-LIKE/ELC-LIKE [Arabidopsis thaliana] (TAIR:AT5G13860.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89049.1); contains InterPro domain Tumour susceptibility gene 101; (InterPro:IPR008883) 0.254340678911277 2.81462930333169 0.0169901910997684 1 2.33407167940604 5.17504280287717 0.254340678911277 0.0659633424853527
AT4G13440_at 0.840661140349906 0.810525600920683 1.33419721338819 1.05350679572642 1.01852499574671 1.15350583037259 0.86818420331395 0.99928369873827 1.21957262601318 0.715161673535606 1.17200335385127 0.900958570892209 0.753784128138611 1.42567081412144 1.32877309736228 0.973340242050788 1.28416217406821 1.03123056316282 0.677763027176863 0.179902812404892 0.183713326236241 0.183096055266075 0.191192078157824 0.186534684677858 0.184174137917312 0.184199506097611 0.186280345197481 0.187193445926287 0.193556787333918 0.180022935761092 0.179902812404892 0.187450292379625 0.182161729269677 0.182701697071705 0.190337766807565 0.180909548742894 0.198068864442801 0.187802479638759 4 4 + 7810220 7810651 7810430.455 7810211 7810675 + gene protein_coding_gene FALSE TRUE AT4G13440.1 calcium-binding EF hand family protein contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.249088986845922 2.81438176176650 0.0169976811184006 1 2.33368377967092 1.99958508991851 0.249088986845922 0.0587117538249929
AT2G46520_at 5.69120999718604 6.53691559306976 6.46972531898912 6.4405110614715 6.73566337372514 6.09400604830328 6.6366409445499 7.03756149954485 5.16399726248795 5.6007646369092 6.73537312485132 6.98114182195922 6.17504654870179 5.83026363277807 6.55915866621817 6.13353714136443 6.41936012984826 5.9117181313618 5.7106046946315 0.263591414693735 0.23790273312707 0.239718004288424 0.245374160012344 0.239491828606515 0.245579202493574 0.238337613837694 0.240799850139877 0.24853120656803 0.246703270234505 0.241533022896598 0.242980739004822 0.245778774949119 0.247630886399859 0.246928055414756 0.239516231122533 0.252141505219106 0.241573755178076 0.250359580936624 2 2 + 19106260 19106813 19106504.545 19103840 19107344 + gene protein_coding_gene FALSE TRUE AT2G46520.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to Importin-beta, N-terminal [Medicago truncatula] (GB:ABE93896.1); similar to Exportin-2 (Exp2) (Importin-alpha re-exporter) (Chromosome segregation 1-like protein) (Cellular apoptosis susceptibility protein) (GB:Q8AY73); similar to putative importin-alpha re-exporter [Oryza sativa (japonica cultivar-group)] (GB:BAA92904.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Cse1; (InterPro:IPR013713); contains InterPro domain CAS/CSE, C-terminal; (InterPro:IPR005043); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.405402738496895 2.81423083278699 0.0170022494885163 1 2.33344727363696 12.3727736117607 0.405402738496895 0.196440510556114
AT3G08640_at 9.18205137371696 9.29661458680789 9.14545197055067 9.19109772514336 9.03986085929924 8.96401755757788 8.9909007658992 9.02131634858103 8.67794839153391 8.4548976424532 9.30145481172132 9.29083904112613 9.01130447379224 8.59172810963382 8.8880365864078 8.55689289837654 8.79321316628436 8.94738810793826 8.129690297326 0.134409609990417 0.130604643262579 0.135455182364930 0.130992910899293 0.140537845944001 0.136132988342245 0.135427784203506 0.130604643262579 0.138940444517937 0.144020182333672 0.135832978833748 0.130699896337353 0.137769097879691 0.150750504469066 0.134223279263861 0.141424904845338 0.134751675108244 0.134405659432636 0.142679623370290 3 3 + 2623492 2623922 2623678.909 2622886 2624314 + gene protein_coding_gene FALSE TRUE AT3G08640.1 alphavirus core protein family similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08630.1); similar to Os01g0812900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044596.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68215.1); similar to P0432B10.9 [Oryza sativa (japonica cultivar-group)] (GB:BAB90391.1) 0.232073982515270 2.81285554241857 0.0170439337908589 1 2.33129222429962 17.7756401950376 0.232073982515270 0.0256013181274399
AT1G64520_at 10.0753680268393 10.1789434002675 10.3111419718112 10.3848731797319 10.3858971188250 10.0541451326338 10.0843313174266 9.8773652336469 9.53173996263005 9.47383249803977 9.91936275358408 9.8676973261184 9.57472213447997 9.71115453816303 9.85728521241598 9.60208020313843 9.58623963845528 9.577613214107 9.27128061950258 0.122095629749487 0.118177667516123 0.120594473285280 0.118241863209604 0.117300283973634 0.123312701995851 0.120668745027761 0.121106279087576 0.131217752767930 0.123304054475663 0.119385803468387 0.117387992739690 0.11926128970964 0.130215667303860 0.121223956796107 0.121074444403706 0.128783236442325 0.121524706096553 0.124824914249300 1 1 + 23961088 23961736 23961346.636 23960049 23961985 + gene protein_coding_gene FALSE TRUE AT1G64520.1 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome non-ATPase regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G42040.1); similar to 26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis] (GB:ABI31652.1); contains InterPro domain 26S proteasome non-ATPase regulatory subunit Nin1/mts3; (InterPro:IPR006746); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) 0.258207020186172 2.81270583925466 0.0170484773679225 1 2.33105764645166 19.7378267081221 0.258207020186172 0.0711544063690357
AT4G03270_at 0.692425960435567 1.19932292486769 0.462553186567352 0.861264488334722 0.544530288129135 0.515243020658505 0.731212171229705 0.898440951350023 0.855555728861142 1.23584318996478 0.948728801898784 1.11216043578857 0.679893820962258 0.387570636113428 0.741531078698792 0.621902702154906 0.69654732682335 0.969370992526301 1.17109411293152 0.210335691203898 0.206849437100973 0.208449876411369 0.204535841780919 0.206357348622474 0.20414704657657 0.207829299065515 0.208860008413494 0.218425086281721 0.212465345772142 0.205361106750396 0.211081973667683 0.221926301403568 0.210574242050341 0.204975582061270 0.20414704657657 0.224774790849078 0.20414704657657 0.215445105010674 4 4 - 1432414 1433176 1432803.636 1432375 1433691 - gene protein_coding_gene FALSE TRUE AT4G03270.1 CYCD6;1 (CYCLIN D6;1); cyclin-dependent protein kinase similar to CYCD4,1 (CYCLIN D4,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G65420.1); similar to Os07g0556000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059961.1); similar to cyclin D1 [Helianthus tuberosus] (GB:AAL47479.1); similar to Os07g0620800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060304.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.301118604464999 -2.81256243652936 0.0170528308574733 1 2.33083294177475 1.66672957475823 -0.301118604464999 0.115407928014987
AT3G08850_at 7.22617286218338 7.16117008818338 7.26731257051317 7.23585147176013 8.31864009306289 7.5731252269078 7.0427828624656 7.32556850443671 7.1911363370713 6.40904381433396 7.02122361738052 6.81679872013937 7.31932870676001 7.5404490245286 6.45971865178195 7.5199990379103 6.95265264669713 7.03808266196438 6.91037459883221 0.212957796360796 0.206079697392778 0.212374317435399 0.207472964892754 0.206721467572214 0.223034103811899 0.217389827744765 0.206813081080025 0.205367346719397 0.223886548904444 0.205367346719397 0.209270523442341 0.209422032705281 0.210689871844005 0.211923643400756 0.205367346719397 0.226130679123544 0.206806392751064 0.207526664662607 3 3|0 -|/ 2687011 2688026 2687358.444 2686589 2695306 - gene protein_coding_gene FALSE TRUE AT3G08850.1 RAPTOR1B (RAPTOR1); nucleotide binding / protein binding Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. similar to RAPTOR1A (RAPTOR2), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G01770.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21850.1); similar to transducin/WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAR82959.1); similar to WD40-like [Medicago truncatula] (GB:ABE88896.1); contains InterPro domain Regulatory associated protein of TOR; (InterPro:IPR004083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain HEAT; (InterPro:IPR000357) 0.328244405613261 2.81232948718062 0.0170599052137837 1 2.33046792357347 14.3540195683430 0.328244405613261 0.138549178127313
AT4G30310_at 9.23289082167475 9.10573598236371 8.93437106111019 8.66968518216069 9.2740880757883 8.68188914323992 9.28170887427265 8.98601646046402 9.26490357899143 9.2440884375732 9.00944283493235 8.82376412405877 8.48787308751168 8.79733915769568 9.05140259544383 9.0747481730796 8.81703811861522 8.82657452484578 9.1633902322477 0.115261611299531 0.115669068737525 0.122960325708355 0.113708182228219 0.120590624368117 0.118821167596711 0.114667268118120 0.115533748998009 0.129915578205419 0.114277615332819 0.114921694254280 0.117818442742247 0.117762287880729 0.121322710475649 0.115807856720594 0.112234910589944 0.125548534312995 0.122583723057225 0.115092572649370 4 4|0 +|/ 14834184 14835051 14834579.3 14831867 14835220 + gene protein_coding_gene FALSE TRUE AT4G30310.1|AT4G30310.2|AT4G30310.3 ribitol kinase, putative similar to putative ribulokinase [Oryza sativa (japonica cultivar-group)] (GB:BAD27990.1); contains InterPro domain Pentulose kinase; (InterPro:IPR006003); contains InterPro domain Carbohydrate kinase, FGGY; (InterPro:IPR000577) -0.31234212918346 -2.81185755342239 0.0170742461883308 1 2.32972843596903 18.0633733217811 -0.31234212918346 0.125313630399779
AT1G51710_at 9.32013227544791 9.1022494379683 9.58986336370715 9.3702244324086 9.25539592697569 9.37246364694253 9.09824177777683 9.01824205289275 8.32873756514202 8.28289320326588 8.5256482334249 8.56539638407433 8.40603130759004 8.4394381107508 8.30404431178355 8.68354677735921 8.93507634461091 8.31105141791786 8.24527623450794 0.164340072966956 0.160758017799239 0.160758017799239 0.170426308721755 0.163942203110284 0.16428622146173 0.162249584480965 0.171609456190894 0.184016739190422 0.165049895448327 0.167116411023172 0.16950051741915 0.165809722249134 0.164340196316286 0.169319812241973 0.165432696709224 0.163599990326875 0.163079791201704 0.169011785047169 1 1|0 -|/ 19179480 19180829 19180193.6 19179310 19183635 - gene protein_coding_gene FALSE TRUE AT1G51710.1|AT1G51710.2 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); ubiquitin-specific protease|UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. similar to UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT3G21280.1); similar to ubiquitin specific protease 14 [Danio rerio] (GB:NP_956267.1); similar to Os01g0550100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043299.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394)|similar to UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT3G21280.1); similar to hypothetical protein LOC505106 [Bos taurus] (GB:NP_001068657.1); similar to Os01g0550100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043299.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.248956949893688 2.81147404832815 0.0170859088872417 1 2.32912751530407 17.6693090035537 0.248956949893688 0.0588942926098546
AT4G02940_at 6.46563252407111 6.87397978649822 6.49164787670684 6.47426381975467 5.65041638674708 5.45838394513155 6.7580268075695 7.12201194358957 6.87808148216909 6.65051318233273 6.799501236038 7.50297694516885 6.93322340344147 7.00233405085717 6.9056325447114 7.44542604746789 7.01657320128118 6.40469287946332 6.82603746131757 0.176150209536014 0.179261851634219 0.189750720045481 0.184738779155182 0.183466679930099 0.192258507024537 0.176342372602132 0.186662435288662 0.193687333569781 0.183660659228255 0.187839116764570 0.174749719300706 0.178181908694119 0.182509039060017 0.174749719300706 0.174749719300706 0.182764551212085 0.180886283450865 0.182677677234463 4 4 + 1310018 1310670 1310365.818 1306503 1310946 + gene protein_coding_gene FALSE TRUE AT4G02940.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G48080.1); similar to Os05g0401500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055490.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.2); similar to Os10g0116900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064055.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.284908547533264 -2.81142717322323 0.0170873349424886 1 2.32905406623220 13.3048815931720 -0.284908547533264 0.100373395269297
AT3G49280_at 1.91622789060592 1.67977812817371 1.78185372247422 1.94583911393059 1.79061375468336 1.59629881860069 1.93585725776247 1.82695360675583 1.95944429932674 2.32435428042991 1.92311404674854 1.92661358807309 1.19914621282543 1.68417599321500 2.05895174038714 1.86190383777145 1.74555860929395 2.07870572686678 2.47275401526961 0.188512788693757 0.190008497366743 0.191610770279692 0.190734765299009 0.186954880062236 0.188523545719321 0.193937294458398 0.189173757230797 0.188040918410367 0.200414116417729 0.192034112147226 0.191407951604955 0.203271268488115 0.191174057445451 0.187143827296457 0.185524024194575 0.195837325820633 0.186729557806805 0.191458557911148 3 3|0 +|/ 18281076 18281681 18281454.778 18281010 18281919 + gene protein_coding_gene FALSE TRUE AT3G49280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.251732923673340 -2.81026475717551 0.0171227365264047 1 2.32723268785394 3.84015549549323 -0.251732923673340 0.0629733529346698
AT4G21140_at 2.83759539923102 3.17991788029518 2.56488038191134 2.77063756615795 2.83457368406789 2.42308911747140 3.11966021736540 3.19838415328439 3.15243079172150 3.09433097514743 2.87129305396 2.91628020420704 2.82330528187347 2.89806905443526 3.21033794109272 3.00756774366553 3.18401389709649 2.91453733662840 3.08765061935642 0.206405568232138 0.207067001553229 0.206416957044638 0.200238306455082 0.200983538809103 0.210445290904092 0.210967856064240 0.212492527905433 0.213804755777032 0.213195896737966 0.199750379516394 0.211566024171981 0.202903290509774 0.203811005126711 0.208790319593306 0.201466745775965 0.20592067844757 0.200877655285559 0.204111040269440 4 4 - 11277576 11278088 11277805.636 11277546 11278232 - gene protein_coding_gene FALSE TRUE AT4G21140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05400.2); similar to Os01g0511200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043171.1) -0.284444728215220 -2.80891915220306 0.0171638086383580 1 2.32512432805581 5.91091547973723 -0.284444728215220 0.100168265013384
AT1G77490_at 8.99255575064542 9.41775657014873 8.37935455400805 8.65184261471163 9.21492291943207 8.78755382729055 10.1877969226674 9.99739264445717 10.0704318437285 10.1151239236346 10.6245798218975 10.7137272833876 10.0118448131185 10.2956632263273 10.2573187551743 10.6173436784080 9.79378326754566 10.2420727741879 9.93104246052579 0.163163162013541 0.156357642727619 0.169217928703383 0.168162417567966 0.162789831127625 0.162661453367444 0.162052429175033 0.157851226779767 0.162149756832451 0.168018705254386 0.161543187329511 0.160848901920588 0.166730538728564 0.168743816542720 0.164072621794878 0.161018963930021 0.181375942082739 0.159752538132845 0.170606266703499 1 1|0 +|/ 29123848 29124913 29124548 29122436 29125109 + gene protein_coding_gene FALSE TRUE AT1G77490.1 TAPX; L-ascorbate peroxidase Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase T, chloroplast precursor (EC 1.11.1.11) (Thylakoid-bound ascorbate peroxidase) (tAPX) (AtAPx06) (APXT) [Arabidopsis Thaliana] (GB:Q42593;GB:Q9CAQ6); similar to SAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT4G08390.2); similar to thylakoid-bound ascorbate peroxidase [Brassica oleracea] (GB:BAD14931.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.304890683288106 -2.80867506858826 0.0171712693750629 1 2.32474189231602 19.3828508646545 -0.304890683288106 0.119136995695271
AT1G12970_at 2.39224148489105 2.40331542886235 2.49814482892328 2.50051579102516 2.68548416619186 2.35686518514381 2.35067853489105 2.08153788519199 2.13973954871256 2.06483902603124 2.22231207561866 2.59401065967976 2.42612740168023 2.7866569395683 2.43120311940585 2.70570922804515 2.21754617148209 2.26882869229009 2.21745299207985 0.174586865292073 0.174369522548897 0.188024700312351 0.187327555518544 0.174067966106365 0.174485400940710 0.175090624727845 0.174651932520378 0.185075661621026 0.177105403713090 0.180059381769849 0.177869006711966 0.173822025822311 0.177833447025558 0.180193650124177 0.179877250662189 0.186115403699944 0.177404748785642 0.173947318783914 1 1 + 4425035 4425569 4425314.364 4423638 4425787 + gene protein_coding_gene FALSE TRUE AT1G12970.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G26500.1); similar to OSIGBa0116M22.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66934.1); similar to OSJNBa0044K18.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE05859.2); similar to leucine-rich-repeat protein [Helianthus annuus] (GB:CAA57523.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) 0.259590628195983 2.8067786135788 0.0172293474460267 1 2.32177055143134 4.70721115059631 0.259590628195983 0.0735340560946612
AT1G55510_at 5.12218006382471 5.22973770662845 4.87533624989279 4.49418127971173 6.78502469667756 5.71032502016972 5.0032722193918 4.57721762727471 4.36300046883042 5.00158785814999 5.23828063620323 5.18525804437616 5.22326255723292 5.62488216487228 5.02106719498989 4.81621960021527 4.79338677357612 5.22585785597041 4.95384845046253 0.251310162147419 0.242395017759876 0.249319412249370 0.247629798197083 0.249391083465119 0.258079288639301 0.246546626824855 0.242395017759876 0.246613654686335 0.245308063841601 0.251203435241024 0.242395017759876 0.250490083310405 0.252961824617584 0.256212000306614 0.248202362624593 0.251954774240477 0.244548506087789 0.246108923135349 1 1|0 +|/ 20728118 20729028 20728530.4 20726968 20729334 + gene protein_coding_gene FALSE TRUE AT1G55510.1 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) branched-chain alpha-keto acid decarboxylase E1 beta similar to DIN4 (DARK INDUCIBLE 4), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [Arabidopsis thaliana] (TAIR:AT3G13450.1); similar to branched chain keto acid dehydrogenase E1, beta polypeptide [Gallus gallus] (GB:NP_989988.1); similar to Os07g0170100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058989.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) 0.425664750807458 2.80634975155181 0.0172425083183644 1 2.32109863278223 10.1815789142350 0.425664750807458 0.211477448940875
AT1G01180_at 1.34233838744552 1.65804589273389 1.52237283408058 1.61420202906518 1.31069440849260 1.44631666097823 1.37970355704427 1.60104070314444 1.46114646346546 1.97965518114457 0.917334076278598 1.24266790937375 1.41236447848376 0.881938668527685 1.09535127426180 1.1948860590561 1.39123735625737 1.40853619597216 1.62461865994763 0.215783856312713 0.219901759047591 0.215783856312713 0.235591901229346 0.220329766292543 0.227027058531146 0.215783856312713 0.22517850761566 0.223618270419234 0.226755201264043 0.215783856312713 0.215783856312713 0.224221757297136 0.218571498078049 0.219727463138128 0.224136869027080 0.218176997853176 0.227977590481139 0.228858796735380 1 1|0 +|/ 76925 77367 77141.5 75633 77446 + gene protein_coding_gene FALSE TRUE AT1G01180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19270.1); similar to hypothetical protein DshiDRAFT_0470 [Dinoroseobacter shibae DFL 12] (GB:ZP_01587119.1); similar to Os09g0518900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063691.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) -0.258659792257015 -2.80588008089305 0.0172569330371524 1 2.32036278443864 2.92509577768757 -0.258659792257015 0.0724946947042312
AT3G53880_at 4.30460409944121 4.63435012892588 4.0865337063018 4.0579725523525 3.18559682260805 3.71298716084778 4.25747499209084 5.18889963015391 3.88625226560775 4.12241858149615 3.82369170027822 4.16606989463046 3.65546116594377 4.28078478113706 4.62507606299042 3.82799338842599 3.56866318059124 3.98254571790079 3.86215950330104 0.207883049631302 0.191966530037446 0.195128576280524 0.190766129749368 0.195202936869896 0.194448388333073 0.194879374775073 0.209352839726291 0.195002425359665 0.190766129749368 0.194800412879611 0.191614075803984 0.210003419230429 0.194636804387796 0.192127307042503 0.193233154899365 0.199115609309981 0.190766129749368 0.190766129749368 3 3|0 +|/ 19965377 19966072 19965668.778 19964151 19966268 + gene protein_coding_gene FALSE TRUE AT3G53880.1 aldo/keto reductase family protein similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to Aldo/keto reductase [Medicago truncatula] (GB:ABE82917.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.400608682886583 -2.80584025333454 0.0172581567915462 1 2.32030038564752 8.15266697990136 -0.400608682886583 0.193886155119499
AT1G75200_at 4.99411981182724 5.2580188411728 5.11857948596814 4.63587739827950 3.9718768010625 4.43706859605428 4.33300322702832 4.71359596810061 4.74667552472696 4.64365676329047 4.52631774768205 4.17266787899084 4.09457826580346 3.888659485064 4.37352863971477 4.37906245059302 4.41709388980544 3.98045027566492 4.42759220627915 0.254466072356724 0.245767566521818 0.241914499821911 0.242474877050700 0.243811890285221 0.243780092921853 0.242780878127436 0.243024133174636 0.250434463278798 0.247580964194770 0.238514119364195 0.2394479291166 0.252517436159512 0.244899162854282 0.2418198128743 0.240748320526992 0.245722429414392 0.242910035355685 0.238333686354853 1 1|0 -|/ 28224559 28225321 28224879.889 28224287 28227370 - gene protein_coding_gene FALSE TRUE AT1G75200.1 flavodoxin family protein / radical SAM domain-containing protein similar to ATR2 (ARABIDOPSIS P450 REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT4G30210.2); similar to NADP/FAD dependent oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL52965.1); similar to Os03g0775300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051429.1); similar to putative oxidoreductase [Oryza sativa (japonica cultivar-group)] (GB:AAN65027.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254); contains InterPro domain Flavodoxin-like; (InterPro:IPR001094) -0.330381946979260 -2.80478324506158 0.0172906664492911 1 2.31864436517001 9.10027734648518 -0.330381946979260 0.141004855524410
AT3G26040_at 1.23266104687859 1.16904728151793 1.09124216783042 1.04468882889144 0.612876680778528 0.676351333733774 1.21207520972967 0.955729449518993 1.03675376021219 0.972544894428943 1.11776098965921 0.626972032455595 1.18018269475819 1.10342410142869 0.82315412145641 0.976996581254528 1.19014549087701 1.04918613295477 1.60550721395365 0.189183163483649 0.201754721010138 0.19459000353846 0.189330541667995 0.189860927226293 0.189326857573192 0.189810325055654 0.188647578963154 0.193893092469895 0.194782760664162 0.197728266729441 0.189666424809266 0.199389192114682 0.189879562866935 0.197961201375265 0.192006807052712 0.189055163226676 0.196150338580600 0.188971051193693 3 3 + 9521770 9522269 9522000.909 9520978 9522307 + gene protein_coding_gene FALSE TRUE AT3G26040.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT1G24420.1); similar to Transferase [Medicago truncatula] (GB:ABE84610.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.2412730077644 -2.80430499989348 0.0173053955803018 1 2.31789510846887 2.10604052867849 -0.2412730077644 0.047694099200397
AT1G58390_at 1.95510664871981 2.05285558744834 1.83450790954846 1.94265064888614 1.33488216075155 1.55743879492219 1.92403781721987 1.65103805640388 2.09040314494165 2.00102291042272 1.69077938161371 1.92627498960450 2.25958623843086 2.08179606890877 1.41524311496880 1.51472878668299 2.04782966021135 1.58517828227506 2.18908727024988 0.183299983308481 0.183015537279172 0.192700515371819 0.189446266033418 0.188339638880244 0.188882907029976 0.186451053057159 0.185291943574217 0.183965536999472 0.196946654902188 0.197002220032228 0.193838519990164 0.192661053270267 0.187759859262523 0.184910677453925 0.184168569873778 0.195702546732632 0.197484305663502 0.191347470769242 1 1 - 21694654 21695183 21694920.273 21694627 21698112 - gene protein_coding_gene FALSE TRUE AT1G58390.1 disease resistance protein (CC-NBS-LRR class), putative similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58400.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58410.1); similar to disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative [Arabidopsis thaliana] (TAIR:AT1G58807.1); similar to Probable disease resistance protein At1g58390 (GB:Q8W474); similar to Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.253358512727652 -2.80372430031002 0.0173232969708627 1 2.31698534913752 3.73590545659174 -0.253358512727652 0.0659676642496917
AT4G36960_at 6.69345016718974 6.50634596549089 6.18840476211166 5.98700932841438 6.54631427119131 6.3988645135914 6.60882402165657 6.53314631204265 6.35808021323404 6.39112491602693 6.46128147120581 6.2160659906195 6.08986067312931 6.42551834239784 6.35651396783284 6.61055927909127 6.38206396801503 5.92736787252719 6.7368139966316 0.205480019176523 0.199423822384671 0.197587144039353 0.211089531740881 0.197706995098208 0.216063398714460 0.203354191950337 0.203914415182385 0.194937145995906 0.191084854076949 0.191084854076949 0.193267964707661 0.191227848317536 0.195517819452263 0.196652888123519 0.191084854076949 0.200264545744777 0.200656176133554 0.194611170967317 4 4 + 17428639 17429555 17429134.273 17426927 17429757 + gene protein_coding_gene FALSE TRUE AT4G36960.1 RNA recognition motif (RRM)-containing protein similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.2); similar to RNA-binding re (GB:ABE93568.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.245989580398143 -2.80323167644237 0.0173384977184586 1 2.31621358369883 12.8347917448277 -0.245989580398143 0.0555493744385125
AT1G30160_at 1.30026504856189 1.45832441709099 1.22022034984575 1.32266195966987 1.13561715352708 1.76830922328787 1.65190183835320 1.55371475198324 1.84292673512623 2.29574977598283 1.27642395540446 1.21136364880678 1.76149770974342 1.85743970623844 2.07938854370668 1.77942978174827 1.69943482894898 2.10249581223157 2.43705725299152 0.185722653558835 0.182891096970190 0.194293639733683 0.185980814368579 0.18564834907412 0.188371150354001 0.18436315184119 0.189902822697684 0.184994637799307 0.186626546146989 0.188065195401354 0.188134568961729 0.201520204638878 0.182660714646299 0.183130021317865 0.194844100116288 0.187132120373207 0.195818289158326 0.195115175645533 1 1|0 +|/ 10606992 10607548 10607185.4 10606194 10607794 + gene protein_coding_gene FALSE TRUE AT1G30160.1|AT1G30160.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05540.1); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.300163174380653 -2.80272518549883 0.0173541402406871 1 2.31542010226486 3.38279959431687 -0.300163174380653 0.115495936689197
AT1G17610_at 4.19228262901612 4.4185054450251 4.86678127532071 4.97311099434198 3.29728254454112 3.43520891345938 2.6904249544161 2.72931930567943 3.00677778046523 2.62171511887846 2.45412723738442 2.6279207319216 2.98467061362951 2.97300026699096 2.56666403415459 2.90521032930087 2.75910554820186 2.69605016617430 3.06138927620346 0.223545560417533 0.222511907296767 0.234499737228694 0.224622543573562 0.230278745938347 0.228157392731908 0.231762300694260 0.222114928286405 0.229531057740942 0.228605380961275 0.224446331948085 0.223926069615154 0.222694324452254 0.226969126109822 0.222083019526932 0.227732865159210 0.228493102401152 0.222083019526932 0.222083019526932 1 1 + 6057568 6058038 6057864.727 6056888 6058350 + gene protein_coding_gene FALSE TRUE AT1G17610.1 disease resistance protein-related similar to disease resistance protein-related [Arabidopsis thaliana] (TAIR:AT5G40090.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44391.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.242339536251164 2.80202250015985 0.0173758653842938 1 2.31431927251973 6.6466000116344 0.242339536251164 0.0498623389444284
AT3G53570_at 6.89672606641677 6.75282038599908 7.14139050623116 7.36878362815872 7.13229020426421 7.15784093545586 7.05836749695637 6.7414944968037 6.88080806572333 7.07788504604486 6.93277918936442 7.48101181169491 7.17780054773345 7.2438802740273 7.12918053159095 7.31605260878484 7.11743954401652 6.86668816882238 6.98129683408061 0.151846730083564 0.153265981652868 0.156297966611616 0.153221135765485 0.156028131119362 0.150666107264228 0.152041526536904 0.157059605130521 0.157985963706043 0.151252056144767 0.163012445351964 0.153901840748551 0.150773550203725 0.156645061970872 0.154970153784705 0.15570713843537 0.154868737219990 0.153514487671558 0.154879048635255 3 3|0 -|/ 19872437 19873348 19872784.875 19872157 19875566 - gene protein_coding_gene FALSE TRUE AT3G53570.1|AT3G53570.2|AT3G53570.3|AT3G53570.4 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast. Identical to Serine/threonine-protein kinase AFC1 (EC 2.7.12.1) (AFC1) [Arabidopsis Thaliana] (GB:P51566;GB:Q39184); similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to putative protein kinase (AME2/AFC1) [Oryza sativa (japonica cultivar-group)] (GB:BAD81689.1); similar to Os01g0837900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044742.1); similar to protein kinase (GB:AAA57117.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.257915821435795 2.80145860817013 0.0173933190425449 1 2.31343588946252 14.1002645815960 0.257915821435795 0.0720784235575531
AT3G51250_at 7.34231990677766 7.94872687524704 8.31588750474243 8.38161594179588 8.41462296506821 8.08557448427724 8.22852772412843 8.07961530584425 7.38853855754365 7.55078032740707 7.75381206491726 7.42818495027981 7.86495725059126 7.75838468271357 6.8916854154601 8.07968547429335 7.73874802936322 7.54765182487854 7.30996008507658 0.185990920765363 0.183968705013083 0.193292304811784 0.184137074822896 0.189904100850438 0.188461133386705 0.198676101830446 0.185968741533579 0.202032644404898 0.18452397459347 0.185030731184572 0.181867089072200 0.190856956819457 0.194093426526820 0.19185983086603 0.179533304517742 0.195814114482571 0.184220705236021 0.181922977924618 3 3 + 19040006 19041373 19040709.727 19039182 19041655 + gene protein_coding_gene FALSE TRUE AT3G51250.1 senescence/dehydration-associated protein-related similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) 0.308045079595652 2.80062377371441 0.0174191910838067 1 2.31212807327112 15.6242688559374 0.308045079595652 0.122673353887847
AT3G10910_at 2.01662950428035 2.52974930176798 2.263268096952 2.42395372301406 2.94843797951218 2.36249501491151 2.85980916635218 3.06910817238082 2.64006464784763 2.38557171000794 1.63780980175058 1.78448955490145 2.24503297861717 1.78043133020685 1.85061896273184 2.02921446411557 2.46993773841642 1.90239778403171 2.49293406992431 0.237680254727453 0.240034016251056 0.236680727038091 0.246691115823375 0.239920618994814 0.248353243571200 0.239522622863132 0.250571957633258 0.234160358757426 0.243925505906555 0.238897480596951 0.235409167818632 0.233696654168887 0.239892764178099 0.240442319759973 0.233724043402263 0.233696654168887 0.248575211089026 0.240454633170249 3 3 - 3413089 3413589 3413336.273 3412916 3414024 - gene protein_coding_gene FALSE TRUE AT3G10910.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3C (ATL3C) [Arabidopsis Thaliana] (GB:Q9SG96); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05280.1); similar to Os04g0419500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052775.1); similar to Os01g0822800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044653.1); similar to putative RING-H2 zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28071.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.33149194917237 -2.80052014948112 0.0174224051421774 1 2.31196574165978 4.79352222961626 -0.33149194917237 0.142310188184748
AT2G10970_at 0.988675395467591 1.00424160744064 0.969080775734218 0.708460056837885 0.616165719278252 0.4500692381104 0.984699865683704 0.757125551601386 0.99539767953767 1.08126710102687 0.584547408389058 0.451621184611091 0.692980093971817 0.712393118591359 0.845860593906222 1.07571734137363 1.41214744187327 0.774656472758548 1.15639934010942 0.184715412079828 0.181909457886319 0.181860398291105 0.190781951328997 0.180412293329608 0.183764165757997 0.185161481535549 0.188843885906210 0.1965154163899 0.195067565816163 0.183684947189358 0.187059839778524 0.186196964885703 0.192292354991728 0.193199519805303 0.184535673806626 0.195508585661647 0.189172809764742 0.186979933357800 2 2 - 4340080 4340567 4340330.636 4339921 4340661 - gene protein_coding_gene FALSE TRUE AT2G10970.1 invertase/pectin methylesterase inhibitor family protein contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.253344620424211 -2.79935894856031 0.0174584620049423 1 2.31014669874765 1.75802902484877 -0.253344620424211 0.066472721514628
AT1G21600_at 8.50508581371587 8.4488397125895 8.03384921323233 8.17364972253634 8.44050038017184 8.28421499491254 7.84904987051119 8.04829281925353 6.55911351123044 7.35649687630159 7.28997966055283 7.54140308649969 7.55325059272972 7.59995994526233 7.5723965923829 7.28003372228363 7.52231995694347 7.49701288507407 7.13484543568479 0.189763302539859 0.183768841409772 0.182679958244360 0.184011833921067 0.180280399345473 0.198742522771893 0.182790603908811 0.186007463024474 0.202386127141419 0.188068605140528 0.195446880566928 0.174786053320061 0.178535476579498 0.183383137662066 0.187741906735794 0.18612770786399 0.17932101154676 0.179305837901039 0.185323186972671 1 0|1 /|- 7571515 7573153 7572300 7570875 7573835 - gene protein_coding_gene FALSE TRUE AT1G21600.1|AT1G21600.2 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91155.1) 0.24273123558644 2.79871251269166 0.0174785669757670 1 2.30913406563611 15.4723668973429 0.24273123558644 0.0509940975565185
AT3G43520_at 9.39909937242547 9.50960962798497 9.89577104227503 10.0552338505856 9.28506770622484 9.14948621331289 9.25326735270214 9.33525952699636 9.06069454806103 9.02087469264907 9.39374379330684 9.3388602027544 8.87734909574858 9.09896281281659 9.47996634349379 9.30132999632453 9.27786958876733 9.31587745923373 8.93610149400437 0.111251018861904 0.109030152332093 0.114802356048217 0.110160211702064 0.111704841192053 0.109625920950947 0.116401464122962 0.109239865930126 0.121504427693288 0.115344162268482 0.107900374515959 0.107783280078453 0.106699592108742 0.114758807835827 0.113694752855088 0.105373390642826 0.116231264975540 0.121347293432514 0.112061860159830 3 3|0 +|/ 15417266 15418616 15418004.2 15417011 15418896 + gene protein_coding_gene FALSE TRUE AT3G43520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26240.1); similar to Os04g0653100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054104.1); similar to transmembrane protein 14C [Argas monolakensis] (GB:ABI52790.1); similar to Os03g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050510.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.238342699861622 2.79786716569196 0.0175048932025831 1 2.3078098634267 18.6185419147937 0.238342699861622 0.0433487119955981
AT1G09470_at 2.64662238218799 2.68234256097448 2.4481349936262 2.72814271135513 2.31893700398765 2.87680977318247 2.90578618248158 2.86085180972360 3.51373462180309 3.07882797387171 2.70536293669530 2.95010706160713 2.8497721540859 2.86975142936225 2.77398404140194 2.56735747198938 2.97129487912268 3.1558682765416 3.18268841250878 0.239914191047326 0.239407385589400 0.243028703085704 0.256255337998973 0.239407385589400 0.262767642287232 0.246499563056667 0.254243304545384 0.246492215005649 0.239407385589400 0.242675543030234 0.239407385589400 0.240087802203158 0.242718740928619 0.248602147186789 0.240215996970408 0.249798530897089 0.260975982078795 0.257863310514508 1 1 - 3055654 3056008 3055894.8 3055236 3056976 - gene protein_coding_gene FALSE TRUE AT1G09470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD86886.1); similar to Os05g0135900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054577.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.291937167340568 -2.79730141804417 0.0175225341038063 1 2.30692365672355 5.7403805692292 -0.291937167340568 0.108476618096490
AT4G24060_at 3.46820610436824 3.69860649794164 3.77493256042395 3.22414470201822 4.58322442671847 3.70784998455365 3.61039763691182 3.58145604236634 3.95825092928198 3.86734494432522 4.25491880674287 4.76077580902841 4.09732498354412 4.19431894090883 4.44080099532709 4.55824071590749 3.74461964003815 4.88713266724358 3.66533312453982 0.221529287329088 0.219478900614525 0.221397691371481 0.224338764438092 0.225050235713768 0.228560550045581 0.216008038000395 0.217853007470558 0.232046380181786 0.219453837336453 0.218726149317562 0.217352075993827 0.224697647178515 0.219503634216801 0.213445994624234 0.217606075862933 0.225584704810235 0.223718068971090 0.215957706277211 4 4 + 12504863 12505371 12505092.909 12503792 12505656 + gene protein_coding_gene FALSE TRUE AT4G24060.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF4.6 (AtDOF4.6) (DOF4.6) [Arabidopsis Thaliana] (GB:Q8LAP8;GB:O22984;GB:Q94C22;GB:Q9SU49); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G64620.1); similar to Os04g0567800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053588.1); similar to Dof21 [Glycine max] (GB:ABI16022.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.384914125912562 2.79720427969822 0.0175255648142520 1 2.30677149701448 7.80489036235858 0.384914125912562 0.183435465040429
AT2G43220_at 2.74608729268222 2.84749964843168 3.1018881097691 2.78085542859368 2.11831075077707 2.82835030743094 2.89292185629974 3.06513501708926 2.79707170580830 3.01410055383191 2.0772745067727 2.59138475445243 2.82450842971632 2.87687588534766 2.73751236063787 2.58579703573786 2.67547685469820 3.04396304934512 3.6403315197851 0.235692663537633 0.236308529402323 0.241194327746023 0.233997598278803 0.248187555571657 0.238729970082507 0.234036532139698 0.238884517441474 0.234125431501985 0.233997598278803 0.237239477275151 0.233997598278803 0.234347792872315 0.234798803095928 0.233997598278803 0.234027282354155 0.242269403615164 0.234460287910223 0.237747215218473 2 2 + 17972481 17972926 17972693.909 17971296 17973288 + gene protein_coding_gene FALSE TRUE AT2G43220.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01910.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G43890.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02190.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.327230977351473 -2.79666628487587 0.0175423596936236 1 2.3059287758862 5.71118123608269 -0.327230977351473 0.139215995997848
AT2G37975_at 6.38743078315402 7.18364591930053 6.73405529976345 6.67547888511108 7.25095647881396 6.85105304008276 6.61895402030374 6.72355596729668 6.57875818348798 5.82558277708398 6.96463565200777 6.81583401176735 6.53723540617696 6.7428465317677 6.95159429709145 6.71712330803394 6.17584757648545 6.66344738639486 6.04579451849194 0.191531401809657 0.183667087693834 0.193652320202210 0.191024567221594 0.190663832355455 0.189539450076001 0.181167087126396 0.181728359363864 0.185021003636417 0.188689577182698 0.185085371010276 0.179364786736908 0.188343791295947 0.181473399173463 0.180634119132633 0.179709738106705 0.197565813616766 0.194419929830002 0.182926039647764 2 2 - 15898983 15899190 15899085 15898813 15900717 - gene protein_coding_gene FALSE TRUE AT2G37975.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54085.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83862.1); contains domain UNCHARACTERIZED (PTHR15858); contains domain SUBFAMILY NOT NAMED (PTHR15858:SF1) 0.347757307478397 2.79647952964432 0.0175481934885679 1 2.30563624284311 13.2261991396801 0.347757307478397 0.155581250297692
AT3G13890_at 1.21287746842755 0.96842106880275 1.37159852033867 1.53615234293345 1.39991642661679 1.52540550857861 1.06059352347937 1.20035976404422 1.93978959213034 1.06622417597937 1.84173689135232 1.83436347028873 1.73938531704072 1.41644737983953 1.08703918265725 1.48299843364160 1.88902165897748 1.76418774825119 1.44051518447950 0.248773305227290 0.243561301871152 0.243549546275357 0.246883166555821 0.241487788447667 0.243979386171719 0.245414748139255 0.245286987347549 0.252204109330911 0.252447268041843 0.249138094624545 0.254345599107938 0.247839183690520 0.247959036231110 0.246348693776026 0.253565455542033 0.25263018722025 0.245883850039646 0.24739974633068 3 3 - 4576869 4577325 4577093 4576751 4578034 - gene protein_coding_gene FALSE TRUE AT3G13890.1|AT3G13890.2 MYB26 (myb domain protein 26); DNA binding / transcription factor|MYB26 (myb domain protein 26) Encodes a putative transcription factor (MYB26). similar to ATMYB103 (myb domain protein 103), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G63910.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE81310.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.248713218077386 2.79638137301647 0.0175512604472662 1 2.30548249099275 2.84145249179560 0.248713218077386 0.0604748686767658
AT2G36360_at 7.61423578644632 7.38566955462696 7.28859323296487 7.3397199999044 7.29242075512421 7.12751791482546 6.10190299620702 6.43947426380984 6.38665254708352 5.61578253280199 5.76922974873472 5.80517384532568 5.92551601142663 5.96174859386387 6.40450174780839 5.69862207378157 5.83267076548927 6.36629343446681 5.47207622532467 0.203242623694750 0.194375689536925 0.201160725284057 0.202225140319646 0.196451324715841 0.204877934026187 0.196210015615352 0.212433855799223 0.206517987506078 0.202997434426298 0.195246937144383 0.199104442418383 0.198089755087587 0.200816068658991 0.194375689536925 0.215706164119475 0.208042726480471 0.199975641038051 0.197897199633295 2 2|0 -|/ 15251224 15252192 15251658.7 15249983 15254694 - gene protein_coding_gene FALSE TRUE AT2G36360.1|AT2G36360.2 kelch repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74150.1); similar to Os03g0835800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051820.1); similar to Kelch motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99751.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.261187375653797 2.79638025601375 0.0175512953517183 1 2.30548074132957 12.9713451276631 0.261187375653797 0.0766153036426599
AT4G15160_at 2.08142152188544 2.23274073162292 1.98467825761711 1.89820720147127 1.67072319274747 1.98705683397185 2.41181491572963 1.94588764393074 2.88645704486756 2.11447930992278 2.01766778581529 2.32932766027189 1.98158490705573 2.34215678926131 2.10002889214560 2.11150570727138 2.20659890920341 2.36739604908294 2.40694125305628 0.204895015050188 0.211074963427599 0.205085909389620 0.204749698683983 0.198828253986265 0.207663455271281 0.203323117968327 0.204281958562783 0.218590538494551 0.203764547858807 0.201481889421276 0.200860611146816 0.206528109535449 0.203294289199004 0.198639830837908 0.198639830837908 0.203103657831306 0.215166508313151 0.199268721514613 4 4|0 +|/ 8646907 8650055 8648802 8646193 8650082 + gene protein_coding_gene FALSE TRUE AT4G15160.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN), lipid binding [Arabidopsis thaliana] (TAIR:AT3G22120.1); similar to cell wall-plasma membrane linker protein [Brassica napus] (GB:CAA64425.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Glutelin; (InterPro:IPR000480); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.285029515137842 -2.79600717643013 0.0175629573358356 1 2.3048963553033 4.35222922410321 -0.285029515137842 0.102018614679248
AT2G30580_at 3.91777779321526 5.00798454566345 4.13086649805681 4.4995939828414 3.76294497030823 4.2175219386957 4.11427150995371 4.85588800330961 4.24893654680086 4.1937917345315 3.56914319529203 3.40369758217994 3.84550176373932 3.77873855761601 3.73905202786924 3.9976635773057 3.61539237571498 3.70992744544887 4.59551775514642 0.201879186973107 0.196774442032204 0.195583905881774 0.200474493968857 0.202270229956261 0.199894525746315 0.203926263108405 0.206694357918076 0.203386911478828 0.198384780119309 0.19442141509868 0.201258625675271 0.196360588248276 0.19442141509868 0.203683859009863 0.19442141509868 0.197482208725465 0.203406451001657 0.213852925310675 2 2 + 13036194 13037415 13036754.909 13033077 13037738 + gene protein_coding_gene FALSE TRUE AT2G30580.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G06770.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97766.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.479970531036901 -2.7955539174354 0.0175771360281956 1 2.30418638431152 8.3400919441582 -0.479970531036901 0.2496517292485
AT1G04520_at 1.37237691137995 1.70530282392659 1.19436151025706 1.34478836139387 1.67847170261544 1.58411102687475 3.25470496988474 3.01176929579396 2.06636269257240 2.53898377424776 2.96837339342789 3.31291860393270 2.42417454230996 2.63256803367920 3.36399642737592 2.60855026319653 2.38673865117385 2.88198007102876 2.77685072929598 0.197915221766236 0.201388589530426 0.206058705344445 0.209854528430226 0.201967829246252 0.210760454932572 0.203106698869744 0.208414001669812 0.204257312690484 0.200207894427709 0.199429276674581 0.201884760042162 0.198462435315299 0.207231994260113 0.208404391303786 0.199329318296485 0.202877003692299 0.208585048570786 0.198686303882871 1 1 + 1232091 1232963 1232629.455 1231577 1234031 + gene protein_coding_gene FALSE TRUE AT1G04520.1 33 kDa secretory protein-related similar to 33 kDa secretory protein-related [Arabidopsis thaliana] (TAIR:AT2G33330.1); similar to Domain of unknown function, putative [Medicago truncatula] (GB:ABE87977.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -0.261962625200402 -2.79519757283764 0.0175882910967135 1 2.30362822231931 4.53480827375128 -0.261962625200402 0.0776607902946953
AT3G27090_at 11.3896656932003 11.4681864122316 11.6108353364365 11.6815689104778 11.7697624314002 11.6749248198856 11.2031195760881 11.3759897862410 11.0135724525282 11.0093275048312 11.1126236700224 11.1203689294590 11.2822621411503 11.1229526418825 10.9060155160510 11.3733561089759 11.5818151925571 11.1376873039931 11.1512503430269 0.0758415725750186 0.0770948798575352 0.078585582359437 0.0773868044419931 0.0772254887298937 0.0804693274074752 0.075967626546583 0.0772499253084395 0.0866254475256448 0.0809276213627804 0.0804964044799099 0.0755782019271439 0.078906019404917 0.07914476005116 0.076771946202987 0.0755782019271439 0.0807345878432901 0.0821054488749087 0.0779213465315899 3 3|0 +|/ 9991695 9992337 9992009.1 9990777 9993063 + gene protein_coding_gene FALSE TRUE AT3G27090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42050.1); similar to hypothetical protein [Citrus x paradisi] (GB:CAA04664.1); contains domain KELCH-RELATED PROTEINS (PTHR23230); contains domain no description (SM00767); contains domain SUBFAMILY NOT NAMED (PTHR23230:SF15) 0.235808797746196 2.79517767797577 0.0175889140968226 1 2.30359706004805 22.6530992648152 0.235808797746196 0.038714391407703
AT1G14220_at 0.713755692436022 0.765848686753552 0.700586634314877 1.03771100117456 0.728797683438295 0.533978756995542 0.8647595942092 0.808091119830588 1.13928865297196 1.13461392486104 0.555683625368144 0.457299889437536 0.700158902814285 0.520614381421989 0.59374283108299 0.325046019258239 0.286543863083085 0.90729226356992 0.769977017004042 0.215170959721302 0.214736011098042 0.224180767395183 0.213666943178266 0.222071563523693 0.213666943178266 0.220133762240287 0.219987653945451 0.225782299509962 0.221484055631993 0.222879630453918 0.218228983312265 0.23060188034492 0.221475257883468 0.218169224483831 0.215908387606148 0.215559462836202 0.217949242414424 0.213666943178266 1 0|1 /|- 4858650 4859341 4858982.1 4858637 4859596 - gene protein_coding_gene FALSE TRUE AT1G14220.1 ribonuclease T2 family protein similar to RNS3 (RIBONUCLEASE 3), endoribonuclease [Arabidopsis thaliana] (TAIR:AT1G26820.1); similar to S-like ribonuclease [Prunus dulcis] (GB:AAG09465.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) -0.254587031967172 -2.79439058050643 0.0176135794333715 1 2.30236420336411 1.54815327295251 -0.254587031967172 0.068685971359933
AT2G31790_at 9.14928921471661 9.26110401080146 8.71097569361549 8.90379273997293 9.00010178526673 8.84962958364848 9.91239381099993 9.86927955427174 8.24896764215234 9.53488489853834 9.29438532835932 9.17235099115765 8.93465916759495 9.06101225128881 8.69392350501494 9.07975813357123 9.40103556274114 9.21658340730935 8.93094409077471 0.131872598823058 0.135846069627376 0.128943447201263 0.126861021200017 0.137328806847066 0.135921351450994 0.135405069668520 0.133496595692893 0.158780293730041 0.132778611365157 0.125440656005965 0.133979389740707 0.143940428773711 0.144693807289646 0.136962634576414 0.132785801299190 0.134682779495255 0.140303878104193 0.135392588858560 2 2 + 13526665 13526983 13526837.818 13525288 13527441 + gene protein_coding_gene FALSE TRUE AT2G31790.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.24005518209016 -2.79383919877989 0.01763087867995 1 2.30150056956575 18.2128936760957 -0.24005518209016 0.0471337130732529
AT1G55120_at 5.21837274715263 5.24901945321809 3.88423473551024 3.99018266474534 4.06029123206054 3.8730373575512 4.38091759076970 4.78059360519233 3.78516585537785 4.37466854424663 4.67117817942553 6.21517585449885 5.14289891326942 5.1632361971568 4.3029698185387 5.37447433570856 3.65679274938398 4.27834915983023 5.10173813506984 0.279072591876579 0.268324517821124 0.264675267391967 0.263678464564861 0.261727869829961 0.274162608454665 0.261727869829961 0.266436439325445 0.290465104139630 0.279380774390792 0.269205879303311 0.262267034844457 0.264919790272436 0.273298702631148 0.277543587796276 0.261727869829961 0.277894606635872 0.272520661470242 0.270526791330838 1 1 + 20572057 20572807 20572440.545 20570265 20572953 + gene protein_coding_gene FALSE TRUE AT1G55120.1 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5); hydrolase, hydrolyzing O-glycosyl compounds / levanase Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. similar to ATCWINV5 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 5), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G13784.1); similar to ATBFRUCT1/ATCWINV1 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 1), beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G13790.1); similar to cell wall invertase precursor [Fragaria x ananassa] (GB:AAD10960.1); similar to cell wall apoplastic invertase [Vitis vinifera] (GB:AAT09980.1); similar to cell wall invertase; beta-fructofuranosidase [Pisum sativum] (GB:AAC17166.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) -0.262589564435646 -2.79214068661362 0.0176842750160163 1 2.298840246457 9.06516046287898 -0.262589564435646 0.0787292435400618
AT3G15090_at 6.93244096066503 7.08084172221461 7.0604626912332 6.90331708814501 6.92243974925448 6.89761543751193 7.88435683806022 7.57903955510413 6.43490736523050 6.7590161479906 6.27740634869501 6.58046871672015 6.57133044958667 6.69585002662765 6.34333540460365 6.68045833763709 6.97651338587014 6.46220909604415 6.76574529174936 0.163992499930036 0.166852766791363 0.161945544059958 0.159744833965117 0.159878791474319 0.159744833965117 0.174029058987691 0.169702457334158 0.171153460833384 0.159744833965117 0.166745582561185 0.160027079094527 0.162018722518488 0.159879686658871 0.16645502728769 0.159744833965117 0.178250971158953 0.162555033816740 0.170315367087431 3 3|0 +|/ 5077972 5078804 5078272.1 5076696 5079123 + gene protein_coding_gene FALSE TRUE AT3G15090.1 oxidoreductase, zinc-binding dehydrogenase family protein similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G23740.1); similar to Os01g0753100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044271.1); similar to oxidoreductase [Setaria italica] (GB:AAP22423.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.251493745870965 -2.79205715070824 0.0176869053031150 1 2.29870940971410 13.7708989581302 -0.251493745870965 0.0648787488424255
AT4G35740_at 2.78145811496874 2.97404988519509 3.07199268197215 2.4090761669052 3.18824306509412 2.64953091461200 3.76296682848397 2.88973523736856 3.59300809189408 3.98889491708934 3.44245682052869 3.32744765374488 2.84025496058655 3.11107171510571 3.21236369740337 3.23907494299267 3.19764176506081 3.04992762096668 3.69597058595047 0.178800727826621 0.179937697674894 0.179962566082557 0.179242864683286 0.176190672297500 0.177366472965374 0.180355186666845 0.179836697120866 0.176190672297500 0.179028568568361 0.176741234156137 0.176190672297500 0.177938991554865 0.182648016028100 0.176190672297500 0.177339948451165 0.195437962542777 0.194178163685176 0.178737826173017 4 4 + 16939549 16940047 16939803.636 16936125 16940337 + gene protein_coding_gene FALSE TRUE AT4G35740.1|AT4G35740.2 RecQl3 (Recq-like 3); ATP binding / ATP-dependent helicase similar to RECQL2 (Arabidopsis RecQ helicase l2), ATP-dependent helicase/ protein binding [Arabidopsis thaliana] (TAIR:AT1G31360.1); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14271.1); similar to DNA helicase RECQE-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19436.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent DNA helicase RecQ; (InterPro:IPR004589)|similar to RECQL2 (Arabidopsis RecQ helicase l2) [Arabidopsis thaliana] (TAIR:AT1G31360.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14271.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent DNA helicase RecQ; (InterPro:IPR004589) -0.427051555310427 -2.79158725082657 0.017701708270099 1 2.29797344158258 6.43429215950496 -0.427051555310427 0.214007410917020
AT2G39560_at 2.05820126278209 1.65793755104990 1.34647977776108 1.82856258570097 1.35834283274883 1.81960578000822 2.01481946024597 2.11600392624955 2.41247267722646 2.47507586796150 2.27650526875421 2.20239522465062 1.89182076512656 2.22513358938721 2.03542236299269 1.89657626147497 2.29094509315143 2.19633819567134 2.30703159712354 0.195762476509132 0.203791787516859 0.19858942486079 0.208023574278047 0.199331896385926 0.196400472875363 0.197845295458331 0.194568230374728 0.202660462049215 0.196103684364924 0.203945736045046 0.195833516128998 0.199091652760142 0.194085877776472 0.194461927218145 0.196984126329367 0.208234304277237 0.194773611345335 0.191747831332636 2 2 - 16512268 16512752 16512544.273 16511924 16513086 - gene protein_coding_gene FALSE TRUE AT2G39560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59350.1); similar to hypothetical protein MtrDRAFT_AC146757g30v1 [Medicago truncatula] (GB:ABE90639.1) -0.322397045823236 -2.79097701230545 0.0177209506881567 1 2.29701768415164 4.03753688502914 -0.322397045823236 0.135780841398796
AT3G45100_at 5.28443051364265 4.56828257819434 4.50457622255667 4.16511668655607 5.34138352215416 4.59152353180883 5.28852525161883 4.88838416263563 4.99099866062156 5.28819673162825 4.36740289254342 4.94226233417298 4.49306455498354 4.65766707432231 4.7534824060295 4.58364780182259 4.77524441035473 5.25614461792673 5.28784660687644 0.221279746396603 0.219838598661262 0.220522563845666 0.220068578922762 0.231291910167144 0.232517757255749 0.239043311314439 0.226719843751593 0.251099817421541 0.22465387746924 0.220620323260440 0.219838598661262 0.223729810990845 0.227616246174825 0.226492204632872 0.223936248887269 0.227400478979908 0.226073546517168 0.226382200737408 3 3|0 +|/ 16516843 16517786 16517461.875 16515445 16518389 + gene protein_coding_gene FALSE TRUE AT3G45100.1|AT3G45100.2 SETH2; transferase, transferring glycosyl groups encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway. similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G73160.1); similar to putative Phosphatidylinositol N-acetylglucosaminyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC10070.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296); contains InterPro domain PIGA, GPI anchor biosynthesis; (InterPro:IPR013234) -0.408577561971603 -2.79076559088797 0.0177276222247874 1 2.29668655854593 9.78784206426 -0.408577561971603 0.201108844711787
AT1G06570_at 9.54094713757721 9.76769975214604 10.1406219673772 10.0569025197033 10.0134472054001 10.1033158776959 10.5880979922412 10.6694426170717 10.2366715257023 10.3539875772898 9.93546997437698 9.49048607947194 9.94959868096986 10.0749563305895 9.24765557272055 10.2283445929530 10.0759478246066 9.858771097121 10.2306428550452 0.0825158897862358 0.0773714406260338 0.0808044005566036 0.0789681935160155 0.080474368489802 0.0816689708712644 0.0850336334613256 0.078693486878101 0.0829529978508963 0.0789799046497707 0.0773714406260338 0.0817846976157679 0.0785921042183385 0.0773714406260338 0.0873787398977346 0.0773714406260338 0.08237851648627 0.0797784800823856 0.0820603188732847 1 1|0 -|/ 2012057 2012696 2012451.5 2011884 2013544 - gene protein_coding_gene FALSE TRUE AT1G06570.1 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. Identical to 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (HPD) [Arabidopsis Thaliana] (GB:P93836;GB:O04330;GB:Q9SHK1); similar to Chain A, Structural Basis For Inhibitor Selectivity Revealed By Crystal Structures Of Plant And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases (GB:1SQD); similar to 4-hydroxyphenylpyruvate dioxygenase [Medicago truncatula] (GB:AAX59006.1); similar to 4-hydroxyphenylpyruvate dioxygenase [Brassica rapa subsp. pekinensis] (GB:ABI63586.1); contains InterPro domain 4-hydroxyphenylpyruvate dioxygenase; (InterPro:IPR005956); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) -0.239544266229760 -2.79010452210998 0.0177484988379141 1 2.29565121168000 20.1757699278751 -0.239544266229760 0.0467948964005487
AT2G03070_at 4.74667323203948 4.85222364696513 5.02166526174979 4.79845577822079 5.50257599196402 5.16894465115876 5.43685794093573 5.13702015195419 4.97926400114351 4.40065097051493 3.92845337929163 3.95688043899267 4.24997537216772 4.05415191697664 4.06716499316574 4.21662558304544 4.18505509001415 4.0798912990175 4.76355058602917 0.228740081328580 0.224205827864489 0.229869276005576 0.225230911531464 0.236005850965495 0.234536779305516 0.224504970673266 0.228785194524567 0.230322120207975 0.223541266195021 0.233827960648277 0.223903956730498 0.224237432863269 0.225356199312083 0.228706040909949 0.223541266195021 0.233419804574519 0.228162157591986 0.22962952524344 2 2|0 +|/ 907528 908722 908129 905618 909069 + gene protein_coding_gene FALSE TRUE AT2G03070.1 similar to NPH4 (NON-PHOTOTROPHIC HYPOCOTYL), transcription factor [Arabidopsis thaliana] (TAIR:AT5G20730.3); similar to hypothetical protein Os03g31010 [Oryza sativa (japonica cultivar-group)] (GB:AAP20836.1) -0.271248541172781 -2.78994637902802 0.0177534966451145 1 2.29540353498963 9.48643372103006 -0.271248541172781 0.0886093846627104
AT1G22400_at 6.32027534558004 6.91805670435097 7.30583056906672 8.29298287553055 6.01489249808868 6.10807608975296 5.37060459625088 6.21044748275664 6.6340687621897 5.11247167654011 6.56647923651584 5.83911581239079 6.26985040167451 6.10612295612237 4.75729415163032 6.06805582686947 5.36482350649173 5.31521908733175 4.93349623761003 0.250127311414676 0.246417268475736 0.268712453785304 0.255159700757606 0.246417268475736 0.265733447538197 0.258239284268987 0.246417268475736 0.254109659282567 0.249939273646819 0.246417268475736 0.25589618436167 0.246417268475736 0.253264482097592 0.256478417488518 0.248603015341055 0.272100973232165 0.262113906741543 0.252861906605665 1 1 - 7903863 7904287 7904111.8 7903649 7906662 - gene protein_coding_gene FALSE TRUE AT1G22400.1 UGT85A1 (UDP-glucosyl transferase 85A1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Identical to Cytokinin-O-glucosyltransferase 2 (EC 2.4.1.-) (Zeatin O- glucosyltransferase 2) (UGT85A1) [Arabidopsis Thaliana] (GB:Q9SK82); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G22380.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); similar to glycosyltransferase NTGT5a [Nicotiana tabacum] (GB:BAD93689.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.475728686403414 2.78930271891588 0.0177738527707644 1 2.29439547280794 12.2405869440847 0.475728686403414 0.247524525696853
AT3G18390_at 8.9820927383183 9.0065781335672 8.34698074290741 8.3340991538872 9.26937998198592 8.57622461162947 9.16168612466673 9.02414211934864 9.5501229574567 9.40148931606948 9.27187991524715 9.5412383397396 9.01959338835577 9.19153893473306 9.4834167447691 9.33558463905294 8.81664257013922 9.08910393548564 9.30695853006164 0.103937743731832 0.104876145348821 0.113791236423087 0.11477868024567 0.109843421973163 0.114614651861859 0.107472315852137 0.110847518699183 0.114424981914805 0.103826955208936 0.108740006763131 0.103826955208936 0.108410907102643 0.107467659414001 0.10725117938243 0.106072243395833 0.10511985056806 0.114261591261871 0.105253292344102 3 3|0 +|/ 6316680 6317566 6317106.875 6313491 6317977 + gene protein_coding_gene FALSE TRUE AT3G18390.1 EMB1865 (EMBRYO DEFECTIVE 1865) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to Os05g0551900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056251.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.306426224564172 -2.78888840634981 0.0177869679611809 1 2.29374660943628 18.156722155607 -0.306426224564172 0.122386258779887
AT2G42080_at 5.02140619083831 5.10846804659701 4.87348634498969 4.68862477683095 4.93139802074667 4.62932858736838 5.21046612592856 5.05813801928166 4.85884850804373 4.96748584173857 4.73907700867841 4.79428614785142 4.82334596141162 4.69461307323362 4.94634238399199 4.74060904329562 4.83105249282614 4.6879943889452 5.08629075130348 0.209276590479733 0.210383760756141 0.213681053420859 0.211502420504793 0.207165723387377 0.208434292530296 0.211650460768608 0.211018095504856 0.212523347188978 0.210150586457328 0.211361666271796 0.205155033038377 0.211807267478292 0.211327240086158 0.205155033038377 0.208237113171319 0.211515384371269 0.214738271680287 0.210565939228575 2 2|0 -|/ 17560514 17561655 17561010 17560326 17562565 - gene protein_coding_gene FALSE TRUE AT2G42080.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58020.1); similar to Os07g0470800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059604.1); similar to DnaJ protein family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06950.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.253810067171733 -2.78832085156229 0.0178049497509810 1 2.29285776091319 9.8166845621849 -0.253810067171733 0.0683956521372839
AT1G78790_at 4.6468156878672 4.97478986929461 4.69951098813662 4.64157712124087 5.06437160541179 4.89759761366622 4.78552559491849 5.16055735235189 5.32374434608253 5.22262859609789 4.96338664714192 4.65281727545469 4.65356807476288 4.90466471485000 4.2524899852553 5.14173031051935 4.69686727393422 4.73136531270881 5.14665571938962 0.313199964182939 0.299557678088350 0.308268342519453 0.303280797218854 0.297066348093174 0.312885156780221 0.311386118581860 0.304100217864837 0.329006592602236 0.30585121398897 0.305723893591436 0.297066348093174 0.303750947763344 0.302220557947089 0.311358723494359 0.297066348093174 0.303603728259566 0.301189646945539 0.303260503689192 1 1|0 -|/ 29628823 29629923 29629341.143 29628422 29629971 - gene protein_coding_gene FALSE TRUE AT1G78790.1|AT1G78790.2 similar to Os04g0481500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053111.1) -0.273778074261225 -2.78815963478726 0.0178100608742551 1 2.29260528129104 9.8491536057035 -0.273778074261225 0.0914714275496711
AT1G76860_at 6.33771677298189 6.63977647650429 5.9993812295048 6.50925214525863 6.59126645719893 6.12864353591336 6.23537042588976 6.42037948923149 6.31774966920171 6.12936902436145 5.84962526017221 5.7296206893893 5.65265659287908 6.02118595287439 5.92351533932663 5.79911372221143 5.78714326522661 5.59653974826665 6.55355114381326 0.179720356964808 0.171463108241092 0.169787805721649 0.169066160085497 0.168198333875660 0.169954764607200 0.166088679149270 0.170546675834041 0.184692458108353 0.170010293256843 0.188922365612752 0.172591268813093 0.170581578504751 0.166651421661875 0.176029483117661 0.176092287872616 0.176966346032012 0.183395257428619 0.174430381084684 1 1|0 -|/ 28859488 28860495 28860225.3 28859308 28860644 - gene protein_coding_gene FALSE TRUE AT1G76860.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G21190.1); similar to LSM Sm-like protein family member [Bombyx mori] (GB:NP_001040418.1); similar to Os01g0866700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044909.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.319903245174223 -2.78803689143971 0.0178139532394809 1 2.29241305510092 12.4219641584364 -0.319903245174223 0.133986866431865
AT1G45976_at 7.04127689575208 7.21706849300708 7.50912515983706 7.5167438630301 7.86930659032342 8.0054321657119 6.58074275092776 6.9929623631179 6.74893605420314 6.92151290283727 6.80722427393667 6.17877342686666 6.81975714183874 6.81454341277332 6.39391295982932 7.23065723635118 6.97213231037993 6.78753040861201 7.2973609191867 0.163102149727265 0.159896021831137 0.158094713374355 0.158094713374355 0.159822736004002 0.161068815876820 0.171494472010427 0.1693795804118 0.179646757097475 0.165474094263187 0.170013353978690 0.161543680360505 0.162658840056909 0.165571891775629 0.174979585853588 0.160078811322609 0.166296024060151 0.167107533808929 0.163094744382571 1 1|0 +|/ 17202425 17203078 17202769.8 17201765 17203175 + gene protein_coding_gene FALSE TRUE AT1G45976.1 SBP1 (S-RIBONUCLEASE BINDING PROTEIN 1); protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G10650.1); similar to hypothetical protein MtrDRAFT_AC148486g8v1 [Medicago truncatula] (GB:ABE89598.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.264217878302762 2.78794120234985 0.0178169882644657 1 2.29226319850665 14.2115004627463 0.264217878302762 0.0810620097551305
AT2G40900_at 3.44007967172743 3.48773934759154 4.18592260353424 4.52409983771775 3.68588471810706 3.93147323533282 3.98322433726958 4.55206542236698 3.171333365368 4.17051770602492 4.12545704688846 4.21986062327617 4.39850676342369 3.95306085456108 4.00177793779851 4.23290532430232 4.43861282848892 3.98228967687101 3.97539879657652 0.247659998855535 0.238646401495208 0.244779457634916 0.247572485467249 0.24935803575234 0.250515596402462 0.238377192941024 0.245776462152059 0.249566282841826 0.246058943497508 0.239134780984629 0.23807358035961 0.240872389385353 0.24541245173294 0.23636859409769 0.23636859409769 0.248599714868755 0.240549769018582 0.241619095611830 2 2|0 -|/ 17070476 17071224 17070878 17070200 17072762 - gene protein_coding_gene FALSE TRUE AT2G40900.1 nodulin MtN21 family protein similar to integral membrane family protein / nodulin MtN21-related [Arabidopsis thaliana] (TAIR:AT3G56620.1); similar to nodulin-like protein [Plantago major] (GB:CAH58631.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.306355081614439 2.78775665976032 0.0178228429626798 1 2.29197419137823 7.9445488990098 0.306355081614439 0.122432864709148
AT1G16020_at 4.90225439652424 5.02172113426195 4.46737812494269 4.62433361798063 5.2818770514634 4.3961950708622 6.32270199051571 6.4262566872093 5.03776543718311 5.52204677126048 5.96376642239783 6.0111887259605 5.87131301534144 5.67418435597143 5.25086653348698 5.54275333390347 4.83973694507233 5.32797849004389 5.29129736835488 0.248648056438150 0.236167363017372 0.237096543067033 0.253094218673001 0.241227579293513 0.251535597072202 0.240925932038262 0.237122634601998 0.252986110223389 0.239614490332621 0.236506661129563 0.236167363017372 0.24243621554879 0.259382881821306 0.244609392265806 0.236167363017372 0.253272871913651 0.246023530790709 0.237616915253174 1 1|0 +|/ 5500171 5500987 5500489.5 5498159 5501352 + gene protein_coding_gene FALSE TRUE AT1G16020.1|AT1G16020.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80910.1); similar to Os08g0427300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061842.1); similar to myrosinase precursor [Brassica oleracea] (GB:AAL67437.1); contains domain FAMILY NOT NAMED (PTHR13056); contains domain SUBFAMILY NOT NAMED (PTHR13056:SF2) -0.349633650154748 -2.78608891668325 0.0178758399773983 1 2.28936244379955 10.6023030942392 -0.349633650154748 0.15804576368804
AT2G36630_at 4.96260661958082 4.93170426532304 6.31107263357908 5.99501672931623 7.4334474572471 5.91627839004323 7.29611547662433 7.41923969296874 7.03303908207419 6.41447058931138 7.48080190100955 7.7889072319629 7.94193981797882 7.40287343084704 7.99101744920554 8.153255193822 6.1694859859978 7.35142074432573 6.89691322856995 0.267133809122294 0.264727720945583 0.268336134265775 0.261631586970668 0.255587952078540 0.257451845353525 0.257571779706714 0.255596111078421 0.267655831890789 0.251753296603723 0.251513658643835 0.255034740699581 0.261868844540386 0.273337201122448 0.253045224244615 0.251513658643835 0.279648934583680 0.252878599753644 0.265535502601102 2 2 - 15360226 15361398 15360854.9 15359570 15362256 - gene protein_coding_gene FALSE TRUE AT2G36630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25737.1); similar to Os03g0726500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051136.1); similar to membrane protein-like protein [Glycine max] (GB:ABC47859.1); contains InterPro domain Protein of unknown function DUF81; (InterPro:IPR002781) 0.507512854165338 2.78600841952052 0.0178784019632767 1 2.28923638497476 13.4414036677747 0.507512854165338 0.269087918245564
AT1G12160_at 2.24284278913739 2.22599747654118 2.17048222337157 2.32867220499503 1.91916507974009 2.38537107477248 2.10382976348849 2.13547602726618 2.38330304800501 2.57111995543873 1.91980392576543 2.11007470683271 1.81267732368478 2.33646056845357 2.17224392362595 2.28915483334076 2.29824367513615 2.63348371706956 3.31435172055774 0.200057401567259 0.202000864983722 0.202749753331282 0.198567679628670 0.20426451334061 0.203909137299981 0.207043629110972 0.199089741155015 0.207209557022109 0.204276212657356 0.204385860493170 0.203087222249405 0.20669750928205 0.205954407187161 0.200347311066035 0.199018272990446 0.197581409961445 0.197581409961445 0.204407202661343 1 1 + 4127173 4127976 4127656.273 4126064 4128308 + gene protein_coding_gene FALSE TRUE AT1G12160.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G12130.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.267927137741863 -2.78599228076453 0.0178789156560678 1 2.28921111165944 4.66536761770027 -0.267927137741863 0.0854226552661425
AFFX-CreX-3_at 13.2194938905816 12.9966932598356 13.5370342250231 13.3431509099541 12.9468025822121 13.1380818976947 12.8570851760628 12.9488121549106 2.04456426380002 1.87635433127342 2.35802873910263 1.83559312164759 2.09564174080477 1.91247752373499 2.07064986698065 2.35980850208349 2.33668810432408 2.07779863454553 1.68168090114640 0.314748096624827 0.314648152392422 0.313735635842683 0.314056256341157 0.311446690917921 0.314187862618903 0.312649690690213 0.316109740666183 0.299055027851785 0.299444991339477 0.295481940721449 0.297451475842133 0.296140405504 0.300286567402161 0.298031970678017 0.299229398912164 0.302413625859742 0.299970761764592 0.301766038104569 NA NA NA NA NA FALSE FALSE 0.249524448559862 2.7859646550174 0.0178797950112384 1 2.28916784972275 15.1225787343141 0.249524448559862 0.0629292235369323
AT3G61870_at 9.92678810101838 9.8869416003242 9.48301623339992 9.37267550317267 9.44206116380944 9.23807881712384 10.6414750817713 10.5565301086456 9.94945893469811 10.9423217163259 10.7766555834369 11.0633675228920 10.4403507238319 10.7138130300686 11.1748679610482 10.9011881828964 10.7415282871616 11.0775767526402 10.5074328965285 0.0880046248417705 0.0868727131696919 0.0976195793924686 0.0969034041962696 0.0870616557973394 0.0930038277381957 0.089359214062292 0.0880304043055736 0.0976761746637192 0.0918314103242493 0.088543503442732 0.0879846027773881 0.089124620247575 0.0917892913829832 0.0976853612011869 0.087001461863364 0.0927280470033097 0.0892932476450019 0.0923421207036145 3 3|0 +|/ 22914069 22914809 22914432.5 22913613 22915045 + gene protein_coding_gene FALSE TRUE AT3G61870.1|AT3G61870.2 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93513.1) -0.237105901958635 -2.78368369761615 0.0179525491642888 1 2.28559597177351 20.4822323368321 -0.237105901958635 0.0432938591954172
AT3G51300_at 2.01601242195286 2.28565219592810 2.45887358390962 2.54380339762643 2.50141629779821 2.45156886710726 2.62966588192860 2.81678228502433 2.69721823965785 2.38359554308409 3.27698781509536 3.08938743329188 2.94317706153838 3.12890195030171 2.93374021733538 2.90223615075866 2.75568111994990 2.73825228287389 2.50747371128382 0.210371411663537 0.215704044861066 0.219314715399713 0.220616165286475 0.225435915644959 0.214510703160259 0.215873427576818 0.215023626141731 0.224571849437 0.210371411663537 0.216817124709913 0.210789075033986 0.214810867848018 0.213427388931696 0.210371411663537 0.210902141569565 0.226968824745564 0.210371411663537 0.224267388996339 3 3|0 +|/ 19054199 19055165 19054824.6 19053866 19055351 + gene protein_coding_gene FALSE TRUE AT3G51300.1 ARAC11/AtROP1/ROP1/ROP1AT (rho-related protein from plants 1); GTP binding / GTPase/ protein binding Pollen-specific Rop GTPase, member of the Rho family of small GTP binding proteins, interacts with RIC3 and RIC4 to control tip growth in pollen tubes. Identical to Rac-like GTP-binding protein ARAC11 (GTPase protein ROP1) (ARAC11) [Arabidopsis Thaliana] (GB:P92978); similar to ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) [Arabidopsis thaliana] (TAIR:AT2G17800.2); similar to Rac-like GTPase 1 [Nicotiana tabacum] (GB:AAK31299.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.246751839809901 2.78345291352503 0.0179599267538778 1 2.28523458550844 5.21320920069363 0.246751839809901 0.0592989414087828
AT4G09830_at 9.71400594502748 9.766124805587 9.61145510040432 9.86602339913058 10.3856589802339 10.3770797851687 9.16026674315505 9.29186460915773 9.48175765809349 9.20468113879661 9.37693179539633 9.36524891750665 9.55371301868935 9.15064056532565 8.9203571641115 9.35682989939201 9.363794909196 9.1506694510558 9.43787663884964 0.120331093098919 0.129166638833671 0.132515994469119 0.125515610686763 0.125941423872881 0.131625839888328 0.123067841491338 0.122456889531013 0.133894548322456 0.129362161037465 0.125675966894471 0.128076950302337 0.124605324088003 0.130209224980081 0.138300091360550 0.130835233178169 0.136961674176331 0.136664839561329 0.129272053780670 4 4 + 6188882 6190543 6189884.455 6188764 6190850 + gene protein_coding_gene FALSE TRUE AT4G09830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64780.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81201.1); contains InterPro domain Tetraspanin; (InterPro:IPR008952) 0.240995096836728 2.78260238281371 0.0179871422021749 1 2.28390275226247 19.0988324344818 0.240995096836728 0.050427842569043
AT1G52160_at 5.0619564195335 5.97972346660792 5.50582549752187 5.53093667795954 4.957389671057 4.62755886705504 5.19342514718671 5.06023979586482 3.9596717162889 4.61053691505464 3.79737601140430 3.24681556981931 3.64949793354616 3.61137092537957 4.08579684910213 4.35851824261071 4.06235839727436 4.13341079759049 4.72085365343989 0.236305002694547 0.23427023626319 0.227599676185426 0.231777515751548 0.230334779663041 0.246497414313534 0.227599676185426 0.227599676185426 0.247284103893519 0.236781738828111 0.232941803499998 0.237221587193108 0.227933346151964 0.236112381299428 0.229679307883396 0.227599676185426 0.235615778535516 0.230446515851217 0.233830426778208 1 1 - 19424666 19425201 19424909.455 19424387 19428108 - gene protein_coding_gene FALSE TRUE AT1G52160.1 metallo-beta-lactamase family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G16260.1); similar to unnamed protein product; gb|AAF29402.1 gene_id:MYA6.7 strong similarity to unknown protein-related [Medicago truncatula] (GB:ABE80923.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) -0.365309766493402 -2.78231399619997 0.0179963793857894 1 2.28345117850768 9.38888053573265 -0.365309766493402 0.170391068599614
AT1G01090_at 10.2541331858199 10.4819726886810 9.92287335877455 10.0442438933316 10.3300132885750 10.1333036243386 11.0401687953410 10.9812960016848 11.0015653103029 11.0301904073565 11.2080864970700 11.1385110168746 10.9053844138590 11.1721604581894 11.0882733805748 10.9990405002772 10.6321624665769 11.0311043475751 10.7592831322066 0.0738084484396699 0.0717451187394756 0.0742317193695555 0.0765582317031267 0.0727780452632651 0.075073570673226 0.0738324936009205 0.0720660599810604 0.077105300974313 0.0745492621370168 0.0717451187394756 0.0717451187394756 0.0743315496134913 0.0717734442834657 0.0722435118820445 0.0717451187394756 0.0815892159211138 0.0746023531475505 0.0755472885751551 1 1 - 47708 48354 48057.818 47485 49286 - gene protein_coding_gene FALSE TRUE AT1G01090.1 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) pyruvate dehydrogenase E1 alpha subunit similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G59900.1); similar to H0716A07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH65949.1); similar to Os04g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052065.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) -0.245145012395398 -2.78216395542273 0.0180011871457760 1 2.28321623660269 21.3745939387750 -0.245145012395398 0.0570824274016007
AT1G08720_at 6.33822482944753 6.38128700841082 6.77206269509793 6.82349986185081 7.20441615056716 6.65141705301216 5.87493885873284 5.4666813763035 5.49570708513236 5.62600812390372 4.96878764388121 5.34720222653596 5.4201267181972 4.8341672111061 5.11470611768754 5.97374081102594 5.12462615257666 5.7073516593781 5.54144719295698 0.218448191849481 0.215674580181625 0.228340635320827 0.22326277120098 0.218174313313661 0.234755166788368 0.217151827792635 0.218343757309600 0.229942343739539 0.221536386188034 0.221584355697473 0.215857910079677 0.215674580181625 0.220213841670196 0.216096742783971 0.215674580181625 0.230190141118081 0.217476935863026 0.227029067499429 1 1|0 +|/ 2777881 2778831 2778255.556 2774033 2779300 + gene protein_coding_gene FALSE TRUE AT1G08720.1 EDR1 (ENHANCED DISEASE RESISTANCE 1); kinase/ protein threonine/tyrosine kinase enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G11850.1); similar to TCTR2 protein [Solanum lycopersicum] (GB:CAC67797.1); similar to TCTR2 protein [Solanum lycopersicum] (GB:CAA06334.1); similar to enhanced disease resistance 1 [Delphinium 'Ma (GB:BAD02482.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.302258511062955 2.78048330458926 0.0180551278688270 1 2.28058464466184 11.8719289966176 0.302258511062955 0.119518309846662
AT4G09690_at 2.12088294676794 2.21847755923767 1.86312060567687 2.22543987880932 1.57714087320279 1.78112129292893 1.93917579617706 2.17748238367739 2.46682778117219 2.49044353125768 2.04102993098146 2.10919125227606 2.01914378388342 2.04613746052542 2.28428449632172 2.10185828986931 2.22610001488428 2.62693838351737 2.43133085137189 0.224580512516238 0.230366908686858 0.229923875942856 0.22956850555127 0.224580512516238 0.233014436639292 0.232011227169011 0.23473879579353 0.226483175515591 0.225978213725508 0.228871332452835 0.224580512516238 0.232149336966572 0.231524147957375 0.236287596469285 0.229022183868781 0.227228785028598 0.225065422190839 0.226081315825500 4 4 + 6125383 6126045 6125667.273 6124894 6126117 + gene protein_coding_gene FALSE TRUE AT4G09690.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01760.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.266665472606038 -2.78026204454567 0.0180622412349114 1 2.28023820031498 4.31020658679290 -0.266665472606038 0.0846373554104601
AT3G17150_at 0.48131543474166 1.11704746853696 1.64985177618645 1.38833190334552 1.60510682779939 1.45694153131069 1.51642909387434 1.47565266132116 1.33751381273273 1.4406570471574 1.51852700146077 1.37508653746607 1.87816247862242 1.43047813319478 1.3428737479399 1.46485419261914 1.26770011190968 1.42404680683288 0.912834027498544 0.298475075829056 0.306695104176256 0.293654116656839 0.281192193357842 0.293268710753411 0.293068334281688 0.298976067091564 0.286942184020913 0.281192193357842 0.300794439604649 0.298264374346712 0.286467765914573 0.291252750000795 0.292944039281709 0.281192193357842 0.281192193357842 0.292170826396843 0.293131796109085 0.293511524754043 3 3 + 5847836 5848004 5847944 5847264 5848201 + gene protein_coding_gene FALSE TRUE AT3G17150.1 pectinesterase inhibitor similar to enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] (TAIR:AT3G17152.1); similar to tomato invertase inhibitor [Solanum lycopersicum] (GB:CAA09420.1); similar to invertase inhibitor [Nicotiana langsdorffii x Nicotiana sanderae] (GB:ABB17076.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.304914004417397 2.78018100619156 0.0180648472641644 1 2.28011131264841 2.68286013149882 0.304914004417397 0.121897761282951
AT2G26980_at 8.1347411164569 8.11589612075456 8.33855143893642 8.24905916670136 9.08304661729697 8.61678409448998 8.7975509683412 8.58934365240502 8.50966704712969 8.26911359319171 9.11234278563695 8.70959332032543 8.57457671105307 8.66397451655701 8.88893211522792 8.69892625446042 8.69107122581843 8.76930021527096 8.3710892091176 0.136156716646144 0.131503571713772 0.132723480587876 0.13321259188009 0.139245274948899 0.131907175048161 0.134997667155077 0.135835729674795 0.151522310717304 0.140977912451823 0.128847018267618 0.128694988807596 0.129916448282624 0.133187091992172 0.133213248967095 0.134495361904620 0.141320626768050 0.135538547212275 0.133775157697736 2 2|0 -|/ 11522801 11524032 11523468.1 11521781 11525583 - gene protein_coding_gene FALSE TRUE AT2G26980.1|AT2G26980.2|AT2G26980.3|AT2G26980.4|AT2G26980.5 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase|CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. similar to protein kinase family protein / NAF domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21326.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95889.1); similar to CBL-interacting protein kinase 4 [Populus trichocarpa] (GB:ABJ91212.1); similar to CBL-interacting protein kinase 3 [Populus trichocarpa] (GB:ABJ91211.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.271388529048767 2.78017432751385 0.0180650620536253 1 2.28010085536698 17.0640614433512 0.271388529048767 0.0897743527374402
AT4G01810_at 6.76448941433549 6.77953641627867 6.36197080612527 6.9397760722406 6.19002232937616 6.20218691081341 6.20875578886769 6.6204301359366 6.13108690434224 5.56104445751159 6.55371174386514 6.57163335999439 6.69230069347149 6.69812778048518 6.50017038354037 6.7999068320066 6.23831293675486 6.39054374485338 5.62989550501221 0.210878687959773 0.198300061580763 0.211142384309144 0.213077070604603 0.198191908395187 0.213496318608426 0.201536892400600 0.202326524925616 0.20937942534962 0.200953960266632 0.196766053548675 0.196766053548675 0.198539642481148 0.200264972080754 0.20074228452014 0.196766053548675 0.213321794501939 0.203571429173744 0.201055585019527 4 4|0 -|/ 776740 777611 777270.444 776488 780355 - gene protein_coding_gene FALSE TRUE AT4G01810.1 protein transport protein-related similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to putative Sec23 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44981.1); similar to Os01g0321700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042891.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.30588278476683 2.77943321320666 0.0180889124672275 1 2.27894045107855 12.6731946792435 0.30588278476683 0.122821161200992
AT3G60740_at 4.52927114457318 4.13979544594553 4.01981699135475 4.04771733468209 3.99001330484863 3.7201842865246 4.69807507232627 4.17634348136309 3.80991607660757 3.99197371794833 3.65345124653354 4.00688903838332 4.27722509849321 3.70026757358287 3.96556105183606 3.85836112143149 3.86794095688293 3.52806206718967 4.27525515411186 0.167357477403220 0.158724093508861 0.156136660587991 0.155456996964256 0.159005120548131 0.168634558081534 0.157781634967971 0.155255973133438 0.163866561346513 0.159690111128715 0.159400664296801 0.157165233719088 0.157719784708821 0.156214778547853 0.159063335661727 0.173704485084396 0.155655343115186 0.163331385294809 0.161203756908414 3 3|0 -|/ 22458372 22459175 22458776.9 22458220 22464339 - gene protein_coding_gene FALSE TRUE AT3G60740.1 TTN1 (TITAN 1) Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization. similar to beta-tubulin cofactor D [Homo sapiens] (GB:NP_005984.3); similar to tubulin folding cofactor D, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47868.1); similar to putative tubulin-folding cofactor [Oryza sativa (japonica cultivar-group)] (GB:AAM94921.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.304966760148563 -2.77898666932683 0.0181032982189096 1 2.27824128296812 8.10661950879271 -0.304966760148563 0.122059528710811
AT3G27473_at 0.807836577286839 1.11541555262796 0.890791917870789 0.858940687481033 0.969983545876858 0.766347970437809 1.00361824467562 0.649461724578402 1.23357082367328 1.23045593011878 0.781235556123748 0.441111735225371 0.8132320188548 0.729016013325057 0.476784865405143 0.431806448013987 0.67362479329198 0.988195257606661 1.08968434728436 0.184645933809691 0.178878196026401 0.182166582249550 0.186180344144631 0.185560551276745 0.182002000002821 0.186025557139143 0.182497345580671 0.195362100958376 0.180723604214559 0.183710237631191 0.186266578176313 0.184458875482392 0.179477786891654 0.184979940933002 0.191525364794842 0.193750682128701 0.188410460118298 0.193967802859746 3 3 - 10170500 10171034 10170784.9 10170479 10172467 - gene protein_coding_gene FALSE TRUE AT3G27473.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42840.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G45530.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28650.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.270130762710107 -2.77790317802077 0.0181382511458419 1 2.27654485945180 1.80852262910757 -0.270130762710107 0.0886664303651716
AT4G18910_at 6.67609723238918 7.2501545038789 6.42973946866677 6.3372993410758 7.99132011137225 7.79011691917445 7.31709969407439 7.46595130567613 7.08809268273286 6.90058757019613 7.72485421336295 8.32695566793855 7.28526538998937 8.27491019402674 7.43297299716505 7.04703371622668 6.42033911872404 7.4340536054018 6.62458187540223 0.214268309463075 0.214268309463075 0.228268548586121 0.226500510748339 0.217487155509297 0.224562533308294 0.217322581102963 0.222794704902052 0.227080108399822 0.214268309463075 0.214268309463075 0.214268309463075 0.221682590389590 0.214268309463075 0.225525289145426 0.214268309463075 0.224311180341603 0.225923338017365 0.215271189486105 4 4|0 +|/ 10366666 10368163 10367687.556 10366070 10368392 + gene protein_coding_gene FALSE TRUE AT4G18910.1 NIP1;2/NLM2 (NOD26-like intrinsic protein 1;2); water channel Identical to Aquaporin NIP1.2 (NOD26-like intrinsic protein 1.2) (Nodulin-26-like major intrinsic protein 2) (AtNLM2) (Protein NLM2) (NodLikeMip2) (NIP1.2) [Arabidopsis Thaliana] (GB:Q8LFP7;GB:O49406); similar to NLM1 (NOD26-like intrinsic protein 1,1), water channel [Arabidopsis thaliana] (TAIR:AT4G19030.1); similar to nodulin26-like intrinsic protein [Pisum sativum] (GB:CAB45652.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.291002006405829 2.77740668302438 0.0181542903129075 1 2.27576751268914 14.3394150665209 0.291002006405829 0.109548721943521
AT2G33170_at 4.44125692325100 4.92023955034224 3.33559626619095 3.06623467759592 3.1318888631469 3.45216163080941 2.36097209773442 1.93633984382340 2.9904298119899 2.40016456097241 3.54271403922886 3.57502946842034 2.97480928529109 3.64534520730484 3.96329125096507 3.28655618000563 3.46515374915471 3.38233060980730 2.64306301892269 0.278531194716234 0.268923533384681 0.272050500994636 0.264404626652720 0.261538829905051 0.268718641300459 0.270109534766897 0.266132499595476 0.274658181358184 0.269795013308870 0.268601034039094 0.261538829905051 0.270553522928571 0.261538829905051 0.267998449249334 0.264024390239099 0.272518996136220 0.275097664532262 0.275755414523040 2 2 - 14063461 14064102 14063754 14063327 14067718 - gene protein_coding_gene FALSE TRUE AT2G33170.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G17230.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63930.1); similar to Leucine Rich Repeat family protein [Solanum demissum] (GB:AAT40539.2); similar to CLAVATA-like kinase [Triticum aestivum] (GB:CAJ19346.1); similar to putative LRR receptor-like kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC84715.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.316643091062632 2.77661289360763 0.018179962889963 1 2.27452472228765 6.4092309921454 0.316643091062632 0.132346343896111
AT1G14760_at 1.67306665619374 1.68299640189286 1.60237382318071 1.70932243113597 1.58272884489053 1.51517374596118 1.31978344587135 1.13488575616860 1.54480012928956 1.68818325062435 1.91185984201849 2.0474061287737 1.41656045919411 2.09680449716960 1.71300915881069 1.64778563808186 1.41600191775586 2.54954937643783 1.36066244420941 0.292137506554760 0.295746703334336 0.305973775819622 0.295848445677132 0.288744914249265 0.286057023588610 0.287923318959685 0.291226094325776 0.290773639584357 0.306108402116061 0.291476617810307 0.300399607195538 0.286994423436908 0.290862832405423 0.301283611128721 0.288306727411241 0.305179694009518 0.284325878938908 0.302160397866674 1 1|0 -|/ 5084696 5085076 5084903.9 5084683 5085208 - gene protein_coding_gene FALSE TRUE AT1G14760.1 DNA binding similar to KNOX1; KNOX2 [Medicago truncatula] (GB:ABE80189.1); contains InterPro domain KNOX1; (InterPro:IPR005540) 0.234186749416477 2.77543454779713 0.0182181394577683 1 2.27267990191847 3.21808508915589 0.234186749416477 0.0388072726580107
AT2G43330_at 6.38923253971847 6.75955771918219 6.24695342839342 5.96570707595799 6.64016844819702 5.90779331804117 7.6988554335015 7.69165100155678 5.69271619543019 6.4536180280014 6.62842248952303 6.5255357191515 6.29968478113403 6.93379773975694 6.34770740381208 6.48334311928298 6.49191511066691 6.3167011271398 6.5590437943541 0.226204526448070 0.221280155088609 0.225584916735360 0.21565773954552 0.222965799962866 0.215171093721991 0.228676138101440 0.223652787905293 0.227988877941236 0.217192950567779 0.224718947856935 0.215171093721991 0.216779191438889 0.215401865415834 0.222091464723532 0.215171093721991 0.226187058182981 0.23856267997105 0.220446931207215 2 2 + 18010349 18010797 18010581 18007931 18011160 + gene protein_coding_gene FALSE TRUE AT2G43330.1 ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G30220.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAO74897.1); similar to Major facilitator superfamily [Medicago truncatula] (GB:ABE93354.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE89732.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.338203087731245 -2.77511494451242 0.0182285078746687 1 2.27217954032989 13.0317470916871 -0.338203087731245 0.150135815863810
AT1G11630_at 4.38667028785486 4.61695221310931 4.26261860630749 4.75682061812165 4.97004810327399 4.75833601533645 4.6154820736161 4.32126651560264 3.50750822140952 3.78514749079088 4.49616076526637 4.19231509580354 4.34497418570433 4.35481280328913 3.47099141340036 4.34958382096429 4.10370370500411 4.01421003852526 4.04168381992022 0.225417021267605 0.222411146902122 0.222162178616786 0.222907233595063 0.226914249257680 0.230145146388489 0.217961107140848 0.232140427082973 0.221454349846101 0.219964018482278 0.226012070338987 0.223154979330264 0.225372621967391 0.225552014954052 0.229763690810082 0.217961107140848 0.217961107140848 0.227220299021940 0.224774831520649 1 1 - 3913175 3913722 3913405.636 3912902 3914407 - gene protein_coding_gene FALSE TRUE AT1G11630.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G61870.1); similar to putative drought-inducible protein 1OS [Oryza sativa (japonica cultivar-group)] (GB:BAB89045.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.294796932167651 2.77503932710398 0.0182309618787317 1 2.27206115653898 8.55800288208692 0.294796932167651 0.113301281365323
AT1G73960_at 7.68575451121506 7.4924352028255 7.29168948038091 7.3583511767742 7.89282051669005 7.32186044295249 7.40229884854775 7.08295345179119 8.08575415963245 8.17420008519106 7.56623827966414 8.00645204317495 7.72930149595243 7.52715751154413 7.19996750378631 7.8659436173546 7.6391825178727 7.51723504523836 8.58872744927731 0.204090960345611 0.214396074712494 0.211626490041166 0.213931942334559 0.205650823026124 0.212140684568701 0.204400266964822 0.214470683641955 0.204617642810813 0.205301922626631 0.205633008846836 0.207317728602343 0.210378207456350 0.203391457413774 0.205526863149088 0.207207660615870 0.215318748625823 0.203391457413774 0.203391457413774 1 1 - 27808872 27809361 27809170.909 27808706 27818107 - gene protein_coding_gene FALSE TRUE AT1G73960.1|AT1G73960.2 membrane alanyl aminopeptidase similar to TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Danio rerio] (GB:AAI07958.1); similar to Transcription initiation factor TFIID subunit 2 (Transcription initiation factor TFIID 150 kDa subunit) (TBP-associated factor 150 kDa) (GB:Q32PW3); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930)|similar to TBP-associated factor 2 [Gallus gallus] (GB:NP_001026679.1); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930) -0.300569622802810 -2.77425326329468 0.0182564914380556 1 2.27083053847960 15.3981847788257 -0.300569622802810 0.118614174376882
AT2G31420_at 2.29900190816980 2.61999987599050 2.397607286401 2.71301615786413 2.32000609354541 2.30243468084897 2.69342428321539 2.67574441758964 2.46931911739992 2.89331924060222 2.45390944507488 2.36462789648870 2.41549258230152 2.06771574576473 2.35725634954135 2.15842850103800 2.77611455609943 2.65145023166284 2.99953367359165 0.222238118662612 0.225277281544973 0.237252034680263 0.221394594012923 0.222986798149905 0.221657929215322 0.226611497378058 0.227069782477979 0.232666651173864 0.2236504726225 0.229715629928483 0.221394594012923 0.221394594012923 0.226646856293235 0.228117572558439 0.231430381335418 0.233315653633628 0.226659260803966 0.230182606030677 2 2 - 13400444 13400970 13400752.091 13400441 13401078 - gene protein_coding_gene FALSE TRUE AT2G31420.1 DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27410.1); similar to Protein of unknown function DUF313 [Medicago truncatula] (GB:ABE88646.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Protein of unknown function DUF313; (InterPro:IPR005508) -0.260271415138976 -2.7741038683363 0.0182613474733642 1 2.27059665690117 5.09916188330029 -0.260271415138976 0.0779982891264782
AT1G16940_at 1.89518106532132 1.55841886506968 2.11920663823232 1.80968691283709 1.4130476183954 1.46481133582940 1.64657804789706 1.72587985773209 2.42342192212928 2.09817270573417 1.40700719873504 1.56476724534788 1.61924859156615 1.81249017156926 1.57711697599744 1.79178860963888 1.82815691938427 1.95079996097326 2.12178352537862 0.227881697503318 0.226260052072879 0.228557668696657 0.222110159669050 0.219946279300197 0.227225997962955 0.221374593888388 0.219647475227988 0.235420379486958 0.233481137685962 0.219580127520557 0.218835088509087 0.224757690225714 0.223445460129733 0.224830955676273 0.217406494958267 0.216153362441517 0.224520101179860 0.229668341282098 1 1|0 +|/ 5792763 5793460 5793135.556 5791976 5793484 + gene protein_coding_gene FALSE TRUE AT1G16940.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G78750.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.262681878971994 -2.77383652141362 0.0182700407128495 1 2.27017812087264 3.65829196444707 -0.262681878971994 0.0808332942962759
AT1G30120_at 9.4825567148714 9.91803185961271 9.6237091073034 9.67584533563298 9.77326391595362 9.53590396075747 10.7353531957425 10.7918533961195 10.4069553522086 10.4722215484770 10.7982069390714 10.4844009142988 10.2758731819657 10.5098442904737 10.4444418981409 10.3399411290671 9.77447318944213 10.5057438740734 10.1645372246685 0.104745219330786 0.103710518933149 0.107847230565452 0.103590313358232 0.101411053601307 0.107657367217371 0.101041030500081 0.103145073117832 0.109174258497594 0.100632970657876 0.100156566251162 0.100263147506574 0.099126243574694 0.106896905866576 0.103332713939123 0.103201861732969 0.118732066764840 0.104293230871868 0.102397258502218 1 1 - 10584356 10584887 10584608.909 10584144 10586619 - gene protein_coding_gene FALSE TRUE AT1G30120.1 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit. similar to transketolase family protein [Arabidopsis thaliana] (TAIR:AT2G34590.1); similar to Os12g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067285.1); similar to Pyruvate dehydrogenase E1 component beta subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97865.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) -0.268028621529665 -2.77349274556543 0.0182812252305684 1 2.26963993849258 20.3118248785082 -0.268028621529665 0.0868535840374882
AT2G37210_at 1.75240921060354 1.7878900529359 1.93190057142902 1.82868594511714 1.95110290108523 1.73839852943340 1.68030702130661 1.56970389155689 1.45628273586159 2.01148100091205 1.87976217099179 1.73467462805281 1.96244133157039 2.30385358137569 2.11455062028192 2.1116370216476 2.06470414514612 2.04757516494094 1.68460782680460 0.193894415087526 0.191877427635603 0.189092972744045 0.195076639372138 0.188848059285006 0.188648755886253 0.188410946140983 0.190851154182279 0.195135990597044 0.204085539207036 0.203577773390943 0.188683484218187 0.194376182839238 0.196019213014476 0.190411055194947 0.193021982449979 0.198894910461295 0.21707294728492 0.201669861647866 2 0|2 /|- 15631338 15631728 15631535.333 15631070 15634019 - gene protein_coding_gene FALSE TRUE AT2G37210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53450.1); similar to Conserved hypothetical protein 730 [Medicago truncatula] (GB:ABE89044.1); contains InterPro domain Conserved hypothetical protein 730; (InterPro:IPR005269) 0.23744354390348 2.7733736192898 0.0182851025161829 1 2.26945344701650 3.65247827586363 0.23744354390348 0.0455854863086579
AT3G06650_at 9.50020777383713 9.65918665868418 9.2080234028223 9.08137399832088 9.57133887121688 9.3711516128398 9.94504817227538 10.1240542452854 9.97351659600426 10.1150943500815 10.4947475111256 10.4183907155041 10.3216085306055 10.1762559944698 10.1561903451504 10.1077943430947 9.43696755109234 9.87012298880025 10.2529741480816 0.137617974255863 0.128877609210065 0.143298137959962 0.139712773322347 0.131335809535825 0.140916736071536 0.132046595012106 0.128783558876591 0.144757272502210 0.129050961550566 0.128783558876591 0.130066139430275 0.128783558876591 0.136578455158085 0.138145928767159 0.130348638463317 0.148686408044463 0.133420615207809 0.129458091226859 3 0|3 /|- 2079271 2080049 2079599.571 2079039 2083297 - gene protein_coding_gene FALSE TRUE AT3G06650.1 ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (GB:CAC86995.1); similar to ATP:citrate lyase [Capsicum annuum] (GB:AAK13318.1); similar to ATP citrate lyase [Cyanophora paradoxa] (GB:CAB46077.1); contains InterPro domain ATP-citrate lyase/succinyl-CoA ligase; (InterPro:IPR005811); contains InterPro domain Succinyl-CoA ligase, alpha subunit; (InterPro:IPR005810) -0.245127095897999 -2.77287292430664 0.0183014079466362 1 2.26866961851234 19.6758588146783 -0.245127095897999 0.0582843560590101
AT2G23130_at 2.43326142654553 2.47634722522922 2.39709804700055 2.18576978629784 2.39757808706785 2.57352720342672 3.63472120790375 3.93527648803364 4.73364904915611 3.45200366942624 6.7430302364496 5.42782451167707 5.92014164100567 6.42491541257828 5.20770766584188 4.60479991837543 4.19799958793674 3.58492902926267 3.88635044712111 0.344860964000163 0.349483414496812 0.342320325084372 0.341872811193177 0.339955527096476 0.340130089913114 0.320690207890983 0.324373986867809 0.320690207890983 0.320690207890983 0.332059635829139 0.321232427345018 0.32240171751554 0.333070254673676 0.323675516356153 0.320690207890983 0.320690207890983 0.320690207890983 0.320690207890983 2 2 + 9851523 9852223 9851784.727 9851379 9852465 + gene protein_coding_gene FALSE TRUE AT2G23130.1|AT2G23130.2 AGP17 (ARABINOGALACTAN PROTEIN 17) AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers. Identical to Lysine-rich arabinogalactan protein 17 precursor (Lys-rich AGP 17) (AGP17) [Arabidopsis Thaliana] (GB:O22194); similar to AGP18 (Arabinogalactan protein 18) [Arabidopsis thaliana] (TAIR:AT4G37450.1); similar to arabinogalactan protein [Nicotiana alata] (GB:AAG24616.1); contains domain PRICHEXTENSN (PR01217) 0.25425456958832 2.77191669711358 0.0183325883274744 1 2.26717269230461 7.39815721175084 0.25425456958832 0.0708906739628541
AT3G60770_at 10.5481940737212 10.5991917147889 10.1058552561075 10.2698972737119 9.99881995950467 10.1182792906671 10.3934200744436 10.6589404207976 9.31800674179008 9.60710883480387 9.4619548035293 9.81676372361982 9.30600739410724 9.29709808927371 10.0316776622806 9.08420482505376 9.19799828921375 9.10551988407554 9.50371872936878 0.0926234314177389 0.0948539357919564 0.0949374347867399 0.0929498959260893 0.095916306392823 0.101408130587351 0.0937692429951332 0.100019791698575 0.104241469356635 0.0933945728591542 0.095591539463120 0.092254960192044 0.0920396025492565 0.0982435941363283 0.0979869626408278 0.099206541864205 0.102729304323001 0.103700673702752 0.0940527084321414 3 0|3 /|- 22471502 22472495 22471888.778 22471265 22472754 - gene protein_coding_gene FALSE TRUE AT3G60770.1 40S ribosomal protein S13 (RPS13A) Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;GB:Q93V69;GB:Q93WJ4;GB:Q9LZY6); Identical to 40S ribosomal protein S13-2 (RPS13B) [Arabidopsis Thaliana] (GB:P59224;GB:O81311;GB:P49203;GB:Q9SLR4); similar to ATRPS13A (RIBOSOMAL PROTEIN S13A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G00100.1); similar to cytoplasmic ribosomal protein S13 [Panax (GB:BAA96366.1); contains InterPro domain Ribosomal S13S15 N-terminal; (InterPro:IPR012606); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) -0.245174322016708 -2.77174882405311 0.0183380677439668 1 2.26690989934723 19.7810403509087 -0.245174322016708 0.0585022365187462
AT1G24190_at 7.14193801453294 7.71969504298776 7.5280242545049 7.68390715334164 8.03804615912948 7.7927934000984 7.08012521804104 7.34305699382449 6.44549704880074 5.8257330200449 6.12868454873966 6.270657117531 6.52580223275143 6.15206907023708 6.10583386028735 6.24274638158651 6.86801846402917 6.46607503488377 6.26560714237773 0.223084314824843 0.216959538709553 0.224649370865730 0.216934955877336 0.225559369877781 0.220479093398266 0.218767360829803 0.22634075875555 0.239618161579644 0.228045075267490 0.222772554842110 0.216666895859833 0.216730041530831 0.228605945965944 0.216353436139813 0.215850486008598 0.228515192271822 0.221101794972490 0.225088874837928 1 1|0 -|/ 8564300 8565205 8564670.111 8563547 8569985 - gene protein_coding_gene FALSE TRUE AT1G24190.1 ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01320.1); similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to transcriptional repressor protein-related [Musa balbisiana] (GB:ABF70137.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE86951.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.302764513051669 2.77173992237884 0.0183383583422857 1 2.26689596446269 13.8029140674727 0.302764513051669 0.120814553256699
AT1G59970_at 3.95140149941299 4.34354265400391 3.36942323587360 3.64001813728987 3.24923353206613 3.28678259527679 4.24169237588749 4.66299631469391 4.40540598349245 4.81753271825478 5.16346497316955 5.90348512034397 4.67175324104728 4.78291321053418 5.13883667785869 4.59218075711822 4.25963532643672 4.75210901878513 4.50730948794017 0.208291248000246 0.205153534500657 0.211948049465748 0.211530911203825 0.211646099659416 0.214090392970156 0.215305766044608 0.207968198951906 0.222814904322890 0.205643259590277 0.205697297170204 0.207116822611586 0.215554112657445 0.206488506140098 0.212935640604520 0.207747843489288 0.218185865091813 0.209506893107196 0.215158320616189 1 1 + 22077802 22078305 22078037.273 22077199 22078541 + gene protein_coding_gene FALSE TRUE AT1G59970.1 matrixin family protein similar to matrixin family protein [Arabidopsis thaliana] (TAIR:AT1G24140.1); similar to Peptidase M10A and M12B, matrixin and adamalysin; Peptidase, metallopeptidases [Medicago truncatula] (GB:ABE93630.1); contains InterPro domain Peptidase M10A and M12B, matrixin and adamalysin; (InterPro:IPR001818); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidase, metallopeptidases; (InterPro:IPR006026); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) -0.291122970886862 -2.77137661735205 0.0183502224803276 1 2.26632724132877 8.58553463667518 -0.291122970886862 0.110254052129086
AT1G72450_at 9.66688509177203 9.6392087841478 9.89763944299324 9.82681586071152 10.2598738713157 9.9165703278666 9.98111664484731 9.95861376990586 10.5900926010055 9.75157732363322 10.7980025330556 10.3910409562611 10.5883092960163 10.5893965447887 10.1453991640999 11.0749186172969 10.5424824787283 10.43509547358 10.3805493305771 0.0983599571771452 0.0953402642962665 0.110515720775970 0.106779120840711 0.100659355573029 0.104277227571300 0.100352631608518 0.0971523356825169 0.105170929350778 0.103476842273272 0.0965273834786146 0.0939905342963221 0.105557192331036 0.0952834657157425 0.101084041012624 0.0977067390072897 0.102188888315655 0.100654765733504 0.0953493448529894 1 1 - 27278052 27279235 27278425.182 27277727 27279979 - gene protein_coding_gene FALSE TRUE AT1G72450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17380.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); similar to Os03g0402800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050322.1); contains InterPro domain ZIM; (InterPro:IPR010399) 0.246804842146626 2.77101964991434 0.0183618871068405 1 2.26576844460884 20.2990006665535 0.246804842146626 0.0609746167211336
AT1G34580_at 1.89014441062929 1.81616983399231 1.96242442477579 1.32549946775542 1.62894241618794 1.40026019376996 1.38623019708958 1.96902683557719 2.21364824989903 2.50907107312541 1.55517417874610 1.37982336802524 2.01895732591445 1.64327627811821 1.210867967485 1.51069397266603 1.74112523183816 1.35518934087045 1.43818621509746 0.258734611073461 0.251964983123742 0.264305999185495 0.258518462261329 0.250012525753167 0.250339450244530 0.246216483204419 0.247321238382329 0.241646109598267 0.26638723430195 0.25368261347407 0.246482273777644 0.266060855448733 0.246782344845324 0.252137314041493 0.241646109598267 0.256408300502767 0.250903613519977 0.2502036108345 1 1 + 12662124 12663373 12662979.727 12660529 12663848 + gene protein_coding_gene FALSE TRUE AT1G34580.1 monosaccharide transporter, putative Identical to Sugar transport protein 5 (Hexose transporter 5) (STP5) [Arabidopsis Thaliana] (GB:Q93Y91;GB:Q9LNM0); similar to STP1 (SUGAR TRANSPORTER 1), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G11260.1); similar to hexose transporter HT2 [Vitis vinifera] (GB:AAT77693.2); similar to monosaccharide transporter [Populus tremula x Populus tremuloides] (GB:CAG27606.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.343928957557913 -2.77078875762925 0.018369435909896 1 2.26540700878119 3.47509904113815 -0.343928957557913 0.155083738089306
AT3G49990_at 7.81890446878146 8.18325439550597 7.4734847631822 7.59363553746168 7.75903304549311 7.60629809633308 7.8661276877894 8.24277477567491 7.84878266763242 8.2375124674765 7.91003893794974 8.33226257467247 8.0361065500365 7.77132418882511 8.31224348813458 8.0416695968761 7.84584900794683 7.74293493063207 8.31459370225026 0.168627651189204 0.170601070735358 0.173299424165399 0.179811221311698 0.167757034773971 0.176417556972490 0.167867928799907 0.169966976228605 0.182543950879503 0.175340179927787 0.165851388123875 0.162237693658866 0.160162991449290 0.176841130704170 0.175063185694432 0.163642901505012 0.175983104130716 0.162505618113316 0.17208407873912 3 3 - 18543480 18544039 18543764.545 18543308 18545257 - gene protein_coding_gene FALSE TRUE AT3G49990.1 similar to Os03g0372700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050206.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46214.1); contains InterPro domain Low temperature viability protein; (InterPro:IPR007307) -0.277114212194650 -2.77043524639440 0.0183809996148857 1 2.26485363122015 15.8842807321963 -0.277114212194650 0.0967216234558918
AT1G22780_at 9.80625424262204 10.1008693498790 9.40323720575384 9.3663277463096 9.62991436646846 9.6040986387522 9.8050755020679 10.0362432047524 9.6079829932267 9.48130434221176 9.5955041056282 10.0819591909781 9.28719544455357 9.39551110640607 10.0090667921283 9.11337098311786 9.04216207936702 9.1116803295847 9.46465023181927 0.120400241217041 0.118639203024271 0.117497565946134 0.120602146093599 0.122733856624165 0.117964526089994 0.122204340803866 0.121181751150269 0.120228876904219 0.119566249296453 0.118344645389073 0.12118596595466 0.125169127797661 0.121981105220303 0.118479834791705 0.115304226756852 0.128828588711299 0.116182349641383 0.125762288651844 1 1|0 +|/ 8068165 8069123 8068649.3 8067853 8069331 + gene protein_coding_gene FALSE TRUE AT1G22780.1 PFL (POINTED FIRST LEAVES); structural constituent of ribosome S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to 40S ribosomal protein S18 (RPS18B) [Arabidopsis thaliana] (TAIR:AT1G34030.1); similar to RPS18C (S18 RIBOSOMAL PROTEIN), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G09800.1); similar to Ribosomal protein S13 [Medicago truncatula] (GB:ABE81204.1); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.249819510312378 -2.77025245870336 0.0183869816271320 1 2.26456750207535 19.2052702536039 -0.249819510312378 0.065272890183941
AT2G46090_at 7.29237085259464 7.59882815151069 6.86111890403366 7.30258321466337 7.52359951075665 7.21950701082654 7.32341671415468 7.65902777657899 7.24007937164208 7.02489194471407 6.74231349718201 7.06790773612201 6.60057396934764 6.96168414224357 7.00483928835433 6.85160661604908 5.90335059245418 6.66187425888642 7.00360090955451 0.214956735849037 0.206600343420349 0.210644823883068 0.209125699144061 0.205050337870536 0.220887590313206 0.210709323807248 0.211183470024677 0.212274195759095 0.205513512176621 0.215184387276411 0.20686913144568 0.211269386505614 0.205608930909602 0.203531870676746 0.203531870676746 0.216113381267696 0.211883008663934 0.210165168609968 2 0|2 /|+ 18959443 18960122 18959710.6 18957929 18960348 + gene protein_coding_gene FALSE TRUE AT2G46090.1 diacylglycerol kinase family protein Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs. similar to ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1), diacylglycerol kinase [Arabidopsis thaliana] (TAIR:AT5G23450.3); similar to conserved hypothetical protein TIGR00147 [Myxococcus xanthus DK 1622] (GB:YP_632849.1); similar to Os03g0125400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048817.1); contains InterPro domain Conserved hypothetical protein 147; (InterPro:IPR005218); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) -0.303482013181670 -2.76997745420239 0.0183959852332148 1 2.26413702281008 14.2544529358316 -0.303482013181670 0.121621094967403
AT4G37020_at 5.5524366372089 5.4069913745361 4.62107665244879 4.8185682655974 5.55279266818493 5.43254445564663 5.5435786779843 5.41081266210891 4.36796767742995 4.82031102890291 4.03030764388563 4.72619529918072 5.01804907048188 4.31871930519266 3.7988953529589 4.82312915738834 5.27313066759498 4.44926647120908 4.80567372527358 0.205873471091613 0.209927386784901 0.211418139254058 0.210137439224156 0.205805899779613 0.212402663158622 0.209571633779554 0.215573388761598 0.216668438115062 0.207793822091009 0.205805899779613 0.205805899779613 0.207502460124211 0.210649601449633 0.214205527960502 0.206861488705388 0.220901606795905 0.215498857920068 0.206099816354691 4 4|0 +|/ 17445906 17446981 17446339.6 17445691 17447394 + gene protein_coding_gene FALSE TRUE AT4G37020.1 similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G19760.1); similar to Centrin [Oryza sativa (japonica cultivar-group)] (GB:AAK13107.1); similar to Os10g0388900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064497.1); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.241074258519533 -2.76866179561772 0.0184391205155658 1 2.2620775968799 9.9020313899755 -0.241074258519533 0.052559555922626
AT1G74040_at 6.42505012149856 6.24065471106618 6.14072712323213 5.59845749011285 5.77615043811174 5.95815452090575 6.67942057568356 6.5747493168021 7.00412116759012 6.42797610805582 6.84082031723549 7.15642056683181 6.47223462330145 7.02540281730662 7.15337038878342 6.92791061812199 6.07933732000246 6.64161687554079 6.80952977366268 0.214382248179506 0.193629677161537 0.212571548925381 0.204714853665173 0.198096882333024 0.215714953680059 0.208650147649397 0.200183514134387 0.205133155872021 0.221127595126061 0.193629677161537 0.197849871127837 0.200889955932262 0.196618257345403 0.195177483756466 0.196693554399581 0.232709091113289 0.200873413384098 0.200737973990478 1 0|1 /|+ 27848196 27849200 27848724.889 27845832 27849437 + gene protein_coding_gene FALSE TRUE AT1G74040.1 IMS1; 2-isopropylmalate synthase Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500). similar to IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT1G18500.1); similar to 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) (GB:O04973); similar to 2-isopropylmalate synthase 1 [Brassica insularis] (GB:ABA26446.1); similar to Putative 2-isopropylmalate synthase [Brassica oleracea] (GB:AAW81741.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891); contains InterPro domain LeuA allosteric (dimerisation) domain; (InterPro:IPR013709); contains InterPro domain Bacterial 2-isopropylmalate synthase; (InterPro:IPR005671); contains InterPro domain Alpha-isopropylmalate/homocitrate synthase; (InterPro:IPR002034) -0.285833056858844 -2.76803916683123 0.0184595691862581 1 2.26110300993912 12.9413446408400 -0.285833056858844 0.105568959261697
AT2G07110_at 0.459777300395571 0.961234292843835 0.727970535322707 0.96947084706743 0.84770186728846 1.01972864186296 0.735455131503782 1.19324473290798 1.25113162636866 1.55041657153128 0.636831264971723 0.925865587117336 0.483388048578806 0.453659016378084 0.726322000343677 0.750097122480786 0.692573070415694 0.726996150542853 1.24801083135372 0.221102103409792 0.224259689185965 0.221349828220586 0.227931225855542 0.218727576149930 0.225245439760318 0.218727576149930 0.218727576149930 0.218727576149930 0.227248627683567 0.218727576149930 0.224695574374079 0.221967008615296 0.228100332190806 0.222085639616619 0.224077929889455 0.218727576149930 0.232078452797542 0.236069071095054 2 2|0 -|/ 2952634 2953151 2952860.857 2952607 2953205 - gene protein_coding_gene FALSE TRUE AT2G07110.1 similar to 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] (TAIR:AT3G46210.5); similar to Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] (GB:ABD33427.1); similar to Os03g0854200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051936.1); contains domain Ribosomal protein S5 domain 2-like (SSF54211); contains domain RIBONUCLEASE PH RELATED (PTHR11953) -0.310798184337501 -2.76776603280557 0.0184685467119176 1 2.26067548463717 1.87648268982651 -0.310798184337501 0.128217746218168
AT1G19430_at 6.62618384528757 6.33415660782505 6.30916734671537 6.55760731112273 6.65694732146969 7.09744158039196 6.40271720523115 6.1425459561999 6.15885359159759 6.6783485640569 7.01819961652507 6.79808768517345 7.12321568417756 6.65341447572057 6.83657081071369 6.71133853812312 7.06529011147153 6.55731918720825 6.7890612661757 0.151042585957221 0.157276784569074 0.156145372096762 0.157796627199288 0.151226930767788 0.153910945698443 0.150909155198979 0.150850161510089 0.160180193721686 0.157032811646624 0.160013455460477 0.156255309603585 0.16352714667381 0.154836743297293 0.159008261630198 0.164414503517204 0.155178836325956 0.162336244854334 0.156983850439659 1 1|0 -|/ 6724781 6725369 6725060.75 6724564 6728031 - gene protein_coding_gene FALSE TRUE AT1G19430.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to Os01g0883900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045015.1); similar to Os03g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051428.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.291115846325722 2.76741388910390 0.0184801275924657 1 2.26012429355718 13.2096045572384 0.291115846325722 0.110636838284395
AT3G07960_at 1.69809590423039 2.04193892866195 1.63375794959986 2.13797998858297 1.42121279169820 1.92790832446654 1.94735108231206 1.97827396448690 2.16084655267867 2.07207806245521 1.55068182693170 1.80314005982748 1.86382444642424 1.72291797678115 1.51853521685141 1.65774729292627 1.58940891004236 1.63050089320833 2.28837443840803 0.172811663666136 0.165916058397482 0.174299233291345 0.173477227195601 0.181118573722263 0.169529001524929 0.175131657017316 0.172628029169597 0.174251666684071 0.165916058397482 0.166277551620307 0.174476610706731 0.170593358119807 0.173238826953961 0.167235606442041 0.168275246908456 0.191986475674832 0.172532420097945 0.172173273218765 3 3|0 +|/ 2537231 2538057 2537699.3 2534893 2538343 + gene protein_coding_gene FALSE TRUE AT3G07960.1 phosphatidylinositol-4-phosphate 5-kinase family protein Identical to Phosphatidylinositol-4-phosphate 5-kinase 6 (EC 2.7.1.68) (AtPIP5K6) (1-phosphatidylinositol-4-phosphate kinase 6) (PtdIns(4)P-5-kinase 6) (Diphosphoinositide kinase 6) (PIP5K6) [Arabidopsis Thaliana] (GB:Q9SFB8); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G41210.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT1G77740.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96031.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABD28331.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 4, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA91440.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.321435989821224 -2.76610627676901 0.0185231941272887 1 2.25807760744173 3.76874533128223 -0.321435989821224 0.137375810323124
AT1G49975_at 6.25705976451761 6.78816494397545 5.86376478214681 5.936494227991 7.0239631419283 6.272556788273 6.64338164337668 6.61617464779848 5.70654174619827 6.53851564262834 7.75689886665662 7.65317573478089 7.59802935073775 7.49450639032441 7.85552812625833 7.78662831460157 5.98889902682014 6.33578086953698 6.67870046901167 0.220292965274012 0.226227389563156 0.229895178538887 0.219273461656757 0.225080756827242 0.249013932477858 0.218152138827227 0.218810006348711 0.257963992536353 0.224233523754715 0.224504481131053 0.214965696184337 0.224411327259381 0.226914516454277 0.23349649896345 0.214965696184337 0.230906436689434 0.249486620426725 0.221191576099732 1 1|0 +|/ 18508515 18508688 18508603.1 18508470 18509265 + gene protein_coding_gene FALSE TRUE AT1G49975.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77883.1); similar to Os03g0731100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051164.1) 0.349380517093108 2.76609814325672 0.0185234623191707 1 2.25806487703168 13.2334950529563 0.349380517093108 0.159803029375794
AT4G37330_at 7.32571199242813 7.683845519509 6.9886841991165 7.30783377559331 8.1767377625321 7.48391247897291 8.46388442606314 8.01600496290211 6.59610853277183 8.33002831903131 7.10835824398777 7.42746627077544 7.57917715216181 7.25642997160506 7.2454562469955 8.36308278561284 7.72335595074779 6.84015266777145 8.39111473465665 0.210358594378887 0.214276116923853 0.215391422678777 0.218752725898116 0.209857178226895 0.222067246079773 0.217720021695858 0.216240137555673 0.249556605429201 0.20950189949925 0.217084872332663 0.211827633393175 0.212641725627507 0.216973846960684 0.21056929397463 0.21746338144223 0.218306795376772 0.217769892514827 0.215757603133171 4 4 - 17562553 17563104 17562826.818 17562339 17564590 - gene protein_coding_gene FALSE TRUE AT4G37330.1 CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.356275977725639 -2.76587842439488 0.0185307087238578 1 2.25772097857909 15.2885029429866 -0.356275977725639 0.165148828618477
AT4G16000_at 9.40845327299004 9.94572257731967 9.71556579843464 10.0749529218478 10.5146506701856 9.79716553785932 9.77080096164197 9.66957889235843 6.8501832037865 6.50282529507194 6.23679784800038 6.46673247575398 7.01246715787914 6.97024610176583 4.57930496846194 8.03002200459126 7.99321598767653 6.99157655646547 5.82273541669465 0.235832830841783 0.235832830841783 0.240822753819231 0.239378805848106 0.237874398450424 0.242312543818945 0.241506934458653 0.235832830841783 0.237997731268395 0.243953213895302 0.2362153460925 0.246224049530307 0.246729536805236 0.239329967411757 0.250254511716977 0.23812621394087 0.235832830841783 0.247074902031857 0.243787163455307 4 4 - 9064204 9064392 9064292.273 9063857 9064493 - gene protein_coding_gene FALSE TRUE AT4G16000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15990.1) 0.36003777753047 2.76575765367514 0.0185346929869577 1 2.25753195217805 16.4505913421257 0.36003777753047 0.168036723037898
AT2G43890_at 1.22741323541122 1.12861411948083 1.19654247944445 0.98541273673874 0.582778888903333 0.873298557539073 0.970216349995767 1.40857247705410 1.54611740412155 1.26496502423533 1.01278589959325 0.774785559729986 1.31098850833731 0.939419385802519 1.45029322297716 0.714472113725537 1.05356321784798 1.23622175463480 1.22754442349807 0.201944345488181 0.204740346879308 0.201663544160602 0.207918563969754 0.201735642866238 0.199068284436362 0.198607148623602 0.200996801547791 0.202231993262293 0.205564779550567 0.213490383569774 0.198677227850772 0.202205670219204 0.204253950226551 0.215272205997379 0.19942695905309 0.208484294835904 0.202331724024629 0.206456716989131 2 2 + 18184717 18185435 18185048.818 18184001 18185467 + gene protein_coding_gene FALSE TRUE AT2G43890.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G05650.1); similar to polygalacturonase [Pyrus communis] (GB:CAH18935.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.279419311308162 -2.76544953729881 0.0185448617070076 1 2.25704970134962 2.25049368479563 -0.279419311308162 0.099547024376754
AT1G63050_at 5.86272226820212 6.25301278969251 5.68462667559679 5.80936339177422 6.27713232932252 5.3561187926573 6.9356426950705 6.63614874198507 6.06609435976137 5.25084896296802 5.06381085228735 5.6039668714012 5.33122942525693 5.63195050443677 5.67547419403476 5.37400439439163 5.37918938586381 5.45035161717854 5.35011419744588 0.198211752984528 0.185905267601524 0.204098511544941 0.19262755657744 0.187667355134533 0.207556853019447 0.196779885604101 0.191609109586197 0.193273945682158 0.201631308251136 0.189828522823242 0.190879098333473 0.188384665679276 0.188779526716025 0.195081921066066 0.188286161205029 0.190706270930428 0.185905267601524 0.188630163737518 1 1|0 -|/ 23379747 23380735 23380147 23379549 23381956 - gene protein_coding_gene FALSE TRUE AT1G63050.1 membrane bound O-acyl transferase (MBOAT) family protein similar to membrane bound O-acyl transferase (MBOAT) family protein [Arabidopsis thaliana] (TAIR:AT1G12640.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL58542.1); similar to Os02g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047723.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) -0.378505005425947 -2.76490899225543 0.0185627146654862 1 2.25620367300182 11.5990624583700 -0.378505005425947 0.181983127760084
AT3G08720_at 5.70169841912415 5.31890617369296 5.81232204935392 6.00059549089502 4.23280439524703 4.28434790555783 2.95613082703793 3.25723198378406 3.34928871254784 2.67827244619528 2.59061089006466 2.25563466882196 2.60622015482813 3.16105089123566 2.44821075367855 2.78095052730615 3.10844213761198 2.83335103924205 2.83853202116574 0.26177334607049 0.26188149889527 0.258158870847954 0.256600923291505 0.23852202072135 0.257404783677308 0.23852202072135 0.246403039683810 0.255435834089034 0.242052522770663 0.243599368124845 0.23852202072135 0.241803395356496 0.244535122451123 0.242809331149885 0.240274602638324 0.242984958820534 0.23852202072135 0.239418728702604 3 3|0 -|/ 2648632 2649340 2648900.9 2648515 2651164 - gene protein_coding_gene FALSE TRUE AT3G08720.1|AT3G08720.2 ATPK19/ATPK2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 19, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2); kinase Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins. Identical to Serine/threonine-protein kinase AtPK19 (EC 2.7.11.1) (Ribosomal- protein S6 kinase homolog) (ATPK19) [Arabidopsis Thaliana] (GB:Q39030;GB:Q949X5;GB:Q9C5R1); similar to ATPK1 (P70 RIBOSOMAL S6 KINASE), kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT3G08730.1); similar to putative pp70 ribosomal protein S6 kinase [Avena sativa] (GB:CAA56313.1); similar to Os03g0334000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050027.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.270860049449682 2.76490654959200 0.0185627953798813 1 2.25619984992224 7.53471629366241 0.270860049449682 0.0907993648451356
AT1G64610_at 5.29094471574072 5.68412666845234 6.36454749573637 6.56862247673664 5.86616255546522 5.5120400940496 4.3102438451269 4.05760337877698 4.66931543120588 4.73836781194801 4.11024224823521 3.59989321104279 4.04272145053596 4.16433168154824 3.90288866268385 4.24288398615376 4.03038231985489 4.05372799705251 4.64958133069431 0.272822702226260 0.264681817922581 0.282476870449352 0.278386597689063 0.273175877563074 0.273082410438222 0.264536909370253 0.260080680536014 0.282618329189944 0.260070496417905 0.260485935929247 0.259745645804511 0.259745645804511 0.266786724525037 0.265210654503444 0.259745645804511 0.267553508049033 0.266860683787286 0.262584731407754 1 1 - 24002637 24003216 24002931.909 24002388 24005546 - gene protein_coding_gene FALSE TRUE AT1G64610.1|AT1G64610.2 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G42010.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE94388.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.28737129508086 2.76398219063046 0.0185933646400491 1 2.25475312924427 9.8088558050545 0.28737129508086 0.107442917746095
AT1G22040_at 4.96920133949124 5.75515498331474 5.62074386153594 5.93053502681168 6.39641533400333 5.91008596191572 5.76629111666776 5.46733928143292 5.01230645293632 5.20580396630011 5.4491832550798 5.13879723143904 5.47021091902723 5.48678147629408 4.52565296686012 5.5088240650846 5.58062817450352 4.99363275575559 4.78894227448035 0.229980818510914 0.215839721170966 0.217351473528744 0.228240315356517 0.220640609338604 0.215839721170966 0.226825324788173 0.215839721170966 0.222791023416911 0.225831092888127 0.215839721170966 0.217635751375207 0.221753916179846 0.222521742586516 0.218943425835188 0.220926781728665 0.219402151962557 0.22801408255157 0.230754358037486 1 1 + 7769196 7769745 7769460.909 7767913 7770044 + gene protein_coding_gene FALSE TRUE AT1G22040.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55270.1); similar to Os10g0363600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064441.1); similar to Os02g0574900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047209.1); similar to putative Kelch motif containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAL84293.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.370905661719952 2.76372455212680 0.0186018938754487 1 2.25434990415648 10.8627532398522 0.370905661719952 0.176446365006944
AT2G35605_at 4.34332298982879 4.51142848743297 4.50446335819425 4.63780991641335 4.56405268271232 4.45973010342171 4.4508255350556 4.92323919798358 4.10155266690231 4.16651757780605 4.30266996114135 4.55098193339993 4.52673059219194 4.86069708828796 4.64557925872181 4.85855035585648 5.14509032856268 4.73824662599109 4.16691294879172 0.218668602575328 0.212954412835908 0.215090818643653 0.214309843857811 0.214922517278288 0.211405341234988 0.212369339727479 0.217525532035313 0.231998549293425 0.220104434966714 0.215544226879864 0.216463157719997 0.215324113930422 0.210686460387561 0.229170157361352 0.210686460387561 0.223155656778133 0.216349526446224 0.218826387644065 2 2 + 14953248 14954079 14953584.091 14953142 14954355 + gene protein_coding_gene FALSE TRUE AT2G35605.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G31760.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) 0.271441916397985 2.76324384822153 0.0186178182090391 1 2.25359757155723 8.97364036680658 0.271441916397985 0.0915880478070079
AT3G12470_at 1.64506008015813 1.88826962623812 1.98229850722102 2.20010183658893 1.39129987697225 2.19533488044802 1.73696709005831 1.76711801707019 1.33886468440647 1.69639760963416 2.02777442321678 1.71824636596279 1.99063402213395 1.91592253624841 1.96025349686614 1.68936323869166 2.17590009481452 1.92158948183679 1.26752261296033 0.203651098402398 0.198373772026843 0.203125478204642 0.210023680643879 0.211655086269556 0.205563254708332 0.203713857174470 0.20050805282342 0.201997805244351 0.205571332058418 0.202869522415314 0.198340159712702 0.199236961735143 0.200063666379777 0.200538152699742 0.198387396792512 0.201577006445815 0.200259143555367 0.205569655506834 3 3 - 3956163 3956699 3956509.182 3956064 3956834 - gene protein_coding_gene FALSE TRUE AT3G12470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12410.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16147.1); similar to Os07g0112400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058743.1); similar to Os01g0660800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043775.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.336801946865379 2.76228218883628 0.0186497159733665 1 2.25209254350832 3.53041728591355 0.336801946865379 0.150265920504844
AT2G29960_at 8.90901023739916 8.90316407618638 8.73620761138024 8.92035440919433 9.48194177125973 9.0478203673986 9.20891433306688 9.0941942772741 8.18671481143198 8.54983584770298 9.2719462161298 9.15340444481951 8.76656438422341 8.96924795345288 9.30276963993724 8.71733390804203 8.44407223132902 8.513012434976 8.40745240000695 0.138253378813849 0.145162114666325 0.139711833794037 0.137696800961629 0.140965090401651 0.140797859027597 0.141970484508418 0.143817077558322 0.150605119326081 0.138380894991956 0.134558091649522 0.134558091649522 0.139046708510474 0.135311531231530 0.134558091649522 0.136584701708074 0.140153744804448 0.144412935239409 0.144328005893684 2 2|0 -|/ 12776262 12777569 12776774.3 12776110 12777656 - gene protein_coding_gene FALSE TRUE AT2G29960.1|AT2G29960.2 CYP5 (cyclophilin 5); peptidyl-prolyl cis-trans isomerase|CYP5 (cyclophilin 5) encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-4 precursor (EC 5.2.1.8) (PPIase CYP19-4) (Rotamase CYP19-4) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) (CYP19-4) [Arabidopsis Thaliana] (GB:Q8LDP4;GB:O22515;GB:O80876); similar to ROC7 (rotamase CyP 7), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G58710.1); similar to putative cyclophilin [Oryza sativa (japonica cultivar-group)] (GB:BAD53621.1); similar to Os06g0708500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058535.1); similar to cyclophilin [Triticum aestivum] (GB:AAP76508.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130)|Identical to Peptidyl-prolyl cis-trans isomerase CYP19-4 precursor (EC 5.2.1.8) (PPIase CYP19-4) (Rotamase CYP19-4) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) (CYP19-4) [Arabidopsis Thaliana] (GB:Q8LDP4;GB:O22515;GB:O80876); similar to ROC7 (rotamase CyP 7), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G58710.1); similar to Os06g0708500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058535.1); similar to cyclophilin [Triticum aestivum] (GB:AAP76508.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.264359928696516 2.76223339549519 0.0186513358744300 1 2.25201618145172 17.6745150127254 0.264359928696516 0.0839923810754812
AT4G31570_at 0.961021017374806 1.42036357419428 1.32638819479386 1.80747019856175 1.12156571235323 1.04027310044061 1.42494322678912 1.02441979688396 1.80283873256259 1.91806113211439 2.39611667814203 2.65050539952221 2.6935683047029 2.45192395080492 1.94310831179771 2.55375766662136 1.96308460341647 1.44296763890540 1.50473172186282 0.212035936789624 0.210433617486236 0.213042230867224 0.215190954338734 0.214393995951979 0.223676581373829 0.212939179728875 0.212344801085928 0.212668562280719 0.211107708397827 0.225396123476616 0.220557828593092 0.216338950845511 0.219251860432587 0.218860855592332 0.222042564933925 0.221799913017184 0.213384381041128 0.211287418144574 4 4|0 +|/ 15305400 15306002 15305793.5 15297067 15306042 + gene protein_coding_gene FALSE TRUE AT4G31570.1 similar to myosin-related [Arabidopsis thaliana] (TAIR:AT1G24460.1); similar to hypothetical protein, conserved [Leishmania major] (GB:CAJ07774.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain t-snare; (InterPro:IPR010989) 0.318119635726338 2.76096547822542 0.0186934789124043 1 2.25003191593989 3.26768373505015 0.318119635726338 0.135100505925966
AT3G03890_at 8.71218401395447 8.7427177940917 9.33135871013544 9.2651333404362 9.14657543083632 8.69324074470564 8.95913804776757 8.34756843568205 8.08419101882595 8.00653431707238 8.06355922198676 7.78894426934477 7.9068554072133 8.2442063402279 8.03263450664113 8.70969336683666 8.69211882597477 8.14292354592118 7.86908373605615 0.146463285960902 0.147135905922050 0.154062501500300 0.151746038825677 0.151259612536908 0.149070806473191 0.153184114993679 0.142251475304683 0.157883056374441 0.145915687228802 0.156953980760204 0.154953662386671 0.147153229698212 0.148122487374537 0.154234617482129 0.142251475304683 0.146777562374799 0.142251475304683 0.150244577677247 3 3|0 -|/ 999677 1000687 1000250.7 999474 1002491 - gene protein_coding_gene FALSE TRUE AT3G03890.1|AT3G03890.2 FMN binding similar to FMN binding [Arabidopsis thaliana] (TAIR:AT3G21140.1); similar to root border cell-specific protein [Pisum sativum] (GB:AAF61443.1); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.314844447593967 2.76086340852783 0.0186968756269501 1 2.24987218202048 16.9918495444527 0.314844447593967 0.132344151200341
AT1G60190_at 4.16029375309135 4.39649265217181 5.4288880632059 6.44149878881174 5.94320743598548 5.4132620397232 6.35401115878617 6.74626169284929 2.90285175860849 3.31380348689075 2.45057702370355 2.82297241831769 4.80031095757422 2.56215734649889 2.44339111970358 3.85634799012639 5.93783920579855 3.13185189403659 2.93764618845745 0.233560849333704 0.234219200137802 0.241381672538936 0.242373607347927 0.239456196436379 0.245443125008114 0.237573420354017 0.243485755008075 0.252166998126850 0.237187041159906 0.236027289683189 0.232594020755934 0.236479132570641 0.242479244665747 0.232071705695982 0.237358632445116 0.253746117989389 0.23355847648448 0.232071705695982 1 1 + 22203676 22204099 22203869.182 22202068 22204343 + gene protein_coding_gene FALSE TRUE AT1G60190.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G10560.1); similar to Os08g0415600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061806.1); similar to putative arm repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAC98577.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.42084822542898 2.75976270608399 0.0187335443020115 1 2.2481496682106 8.88654685097253 0.42084822542898 0.213066277157772
AT2G42450_at 2.78610875811719 3.19493110728315 3.16982185872949 3.28182646636045 3.28968788963729 3.41030159571997 2.62230680461235 2.70905861999642 2.03918153932005 2.8643474439702 2.72005221572412 2.83599506298659 2.71505352373126 2.36464487506164 2.69555030158757 2.49208068492152 2.77441579416228 2.37287637568772 2.78821617551538 0.220445488109168 0.222437636220434 0.220150533905984 0.214384040121517 0.214384040121517 0.222232000692148 0.214384040121517 0.21668554390489 0.227306693353376 0.214757063314684 0.217963080499216 0.214384040121517 0.218093654857893 0.214384040121517 0.225313968515217 0.216904124761058 0.222523939611988 0.231126099281320 0.217632515328515 2 2 - 17679521 17680206 17679779.727 17679331 17682097 - gene protein_coding_gene FALSE TRUE AT2G42450.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT3G14075.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46608.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.258613340703576 2.75882947799656 0.0187646898499955 1 2.24668928179485 5.65062971614106 0.258613340703576 0.0777310789220642
AT4G33080_at 8.593249357471 8.85942070690596 8.76965483764408 8.88017052931669 9.30184149251134 9.17811542207355 9.23767861989487 9.40720062792053 8.68437699407275 8.63221306929604 9.22998314490738 8.93409450198816 9.05379381338575 9.14151546587366 8.6249745154212 9.42006203441154 9.26533365738636 8.84838854705017 8.42456321694689 0.144083680392792 0.145440510003277 0.154202612775553 0.147280576069737 0.148271337158987 0.149471038629607 0.152577382308568 0.143237529045393 0.153803433611452 0.151707534236610 0.143227089215999 0.143131495363800 0.148100558808924 0.151057397347981 0.147941476121718 0.144841468918921 0.148640986046798 0.149634357860569 0.152755790063127 4 4|0 +|/ 15961965 15963799 15962814 15959965 15964713 + gene protein_coding_gene FALSE TRUE AT4G33080.1|AT4G33080.2 protein kinase, putative|kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19400.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G23310.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.3); similar to protein kinase [Raphanus sativus] (GB:BAC76895.1); similar to protein kinase [Spinacia oleracea] (GB:CAA82991.1); similar to protein kinase [Raphanus sativus] (GB:BAC76896.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19400.1); similar to protein kinase [Raphanus sativus] (GB:BAC76895.1); similar to protein kinase [Spinacia oleracea] (GB:CAA82991.1); similar to protein kinase [Raphanus sativus] (GB:BAC76896.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.246221012809729 2.75880197971270 0.0187656083591861 1 2.24664625098639 17.8509927676297 0.246221012809729 0.0616975086102364
AT1G80740_at 1.83415878626387 1.88080003457658 1.96063713927987 1.94011685371799 1.01214752015015 1.61884475596157 1.71424408969872 1.60926738733643 1.94253043434270 1.90451344983723 1.82473338885691 1.32944236540869 1.53519741482331 1.13950313426830 1.37568786519420 1.62587355590161 1.39819373047224 1.78818257128948 1.99662560736651 0.202786732887211 0.191792477780693 0.19767820811116 0.199728379126111 0.191792477780693 0.194775749775488 0.195950852186146 0.197975423097043 0.198318285528755 0.206191473351037 0.197098548654875 0.199724369354004 0.198899742604035 0.195856509906145 0.196094106954921 0.191792477780693 0.207440659425243 0.197404007410872 0.202336840824412 1 0|1 /|+ 30350700 30351672 30351195.429 30347286 30351940 + gene protein_coding_gene FALSE TRUE AT1G80740.1 CMT1 (CHROMOMETHYLASE 1); DNA binding ecotype Kl-0 chromomethylase (CMT1) Identical to DNA (cytosine-5)-methyltransferase CMT1 (EC 2.1.1.37) (Chromomethylase 1) (Protein CHROMOMETHYLASE1) (CMT1) [Arabidopsis Thaliana] (GB:O49139;GB:O49137;GB:O49138;GB:O49141;GB:O50057;GB:O50073;GB:Q38940;GB:Q7G196); similar to chromomethylase 2 (CMT2) [Arabidopsis thaliana] (TAIR:AT4G19020.1); similar to CMT3 (CHROMOMETHYLASE 3) [Arabidopsis thaliana] (TAIR:AT1G69770.1); similar to DNA (cytosine-5)-methyltransferase 1 (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) (GB:Q9AXT8); similar to theoretical protein with similarity to Swiss-Prot Accession Number P34881 DNA (cytosine-5-) methyltransferase (GB:AAA98912.1); similar to chromomethylase-like protein [Nicotiana tabacum] (GB:BAC53936.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025); contains InterPro domain Chromo; (InterPro:IPR000953) -0.286234542215071 -2.75834981038183 0.0187807183308759 1 2.24593867680250 3.42127286276931 -0.286234542215071 0.106916153378545
AT1G06730_at 3.65420423207689 3.58885812529008 3.51724620334704 3.39917411329866 3.93854259768839 3.88119611497839 4.61651694619577 4.14820693872006 4.39777611309264 3.71745448622694 3.33833949929085 3.66479872009257 3.69885283388253 4.2375057383566 3.7372604825405 4.01228926533065 4.06280677560403 3.6492251783718 3.92015552814991 0.202685617298989 0.20649064776856 0.204741222626145 0.208387536466452 0.207480876073269 0.212632252932041 0.214441035697003 0.202685617298989 0.222234892860023 0.205924145188859 0.205122225804888 0.207014351615635 0.202803898821716 0.204230349882804 0.20607970650774 0.207544683210007 0.205893039972294 0.204521345858016 0.212152538307973 1 1 + 2069250 2070019 2069647.909 2067528 2070445 + gene protein_coding_gene FALSE TRUE AT1G06730.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G59480.1); similar to Ribokinase (ISS) [Ostreococcus tauri] (GB:CAL55568.1); similar to Os03g0164700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049064.1); contains InterPro domain PfkB; (InterPro:IPR011611) -0.264783683691027 -2.75797691819399 0.0187931882427871 1 2.24535516596277 7.74895825270284 -0.264783683691027 0.0849227768768341
AT3G51470_at 2.66266210136733 2.37695377225022 2.23309711655538 2.54578481794737 1.99616241355431 2.02075845394676 2.33457232813145 2.34684712854485 3.33413981174692 3.14629410034697 3.25125506149862 2.98580874819226 2.89170534418571 2.94100441399994 3.39503241000017 2.69203996086767 2.55243255791132 2.87153722453763 3.19846337415423 0.21061750404809 0.204246155183983 0.208191045700702 0.209239844888696 0.206711830314098 0.20674552175084 0.209279590447960 0.206665336790846 0.216071076230628 0.216126211483925 0.211043847642411 0.206344596921392 0.212468049516617 0.205910614712678 0.212152937563635 0.203687476734937 0.216574301682028 0.20881442317477 0.207482149487319 3 3 - 19108972 19109458 19109249.545 19108766 19110254 - gene protein_coding_gene FALSE TRUE AT3G51470.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G33700.1); similar to putative protein phosphatase-2C [Oryza sativa] (GB:AAG46118.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.255002631169689 -2.7578761671081 0.0187965588808819 1 2.24519750928543 5.40155529681981 -0.255002631169689 0.073453190954094
AT1G80670_at 5.08238654209166 4.81511738162947 5.06496694877474 4.52510129623617 4.12891085183874 4.29390199648751 4.33146396780888 4.25460591515733 4.35317778013563 4.2212258317659 5.13628880986145 4.87981727096594 4.90698481216694 5.21524046986915 4.89169457539944 5.81067339608843 5.23657514779291 4.0423973554449 4.38792738569597 0.199212196118647 0.198520238351933 0.209038777559473 0.201262792883192 0.204922212115656 0.205554662636267 0.203575184350039 0.203270187251424 0.21018095981926 0.203209093938202 0.199918492480919 0.211527242926093 0.208445631293059 0.201491749939625 0.199418044549116 0.203462221532923 0.203840179014493 0.206792757136173 0.203185536362802 1 1|0 -|/ 30325879 30327116 30326470.5 30325468 30328672 - gene protein_coding_gene FALSE TRUE AT1G80670.1 transducin family protein / WD-40 repeat family protein Identical to Rae1-like protein At1g80670 [Arabidopsis Thaliana] (GB:Q38942;GB:Q9SAJ0); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G15850.1); similar to RNA export 1 [Nicotiana benthamiana] (GB:ABG29731.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.28825440108097 2.75770270611218 0.0188023634470097 1 2.24492607623659 9.22992485195196 0.28825440108097 0.108903090251173
AT3G16690_at 1.70882126768805 2.19516857480951 1.62648018876164 1.78659874730012 2.55103610541392 2.66639772274979 1.80486429228095 2.43468296892471 2.14698650608472 2.46615297675853 3.18556173848206 2.80923491703463 3.38627461568821 2.97925067491405 2.55401731480792 2.44457918318730 2.22936377972727 2.82491257221616 2.20181940432059 0.198352572006476 0.198352572006476 0.202686355506311 0.198599902350657 0.201532523682578 0.199864951192129 0.206401934755306 0.200810238250573 0.209638474278288 0.203856890634769 0.198352572006476 0.201169649645158 0.210351800352816 0.217848260847777 0.203172158128188 0.208896751721956 0.205654096927462 0.206356605761493 0.203213846658961 3 3|0 -|/ 5684580 5685961 5685151.889 5684370 5686496 - gene protein_coding_gene FALSE TRUE AT3G16690.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G15920.1); similar to MtN3/saliva family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95863.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.325870151124905 2.75746630290893 0.0188102771369530 1 2.2445561529794 4.63340738943866 0.325870151124905 0.141878602446632
AT2G42520_at 7.83813553796625 7.7349930155035 7.5741300619009 7.89152483771155 7.22854303625241 7.19441445049051 6.21960235377728 7.11357570322376 6.92675664734464 6.73522193550178 6.95839223403605 7.14916640762643 7.23478836624285 7.28024418331574 7.21239921848822 7.02261391760158 7.17554857670967 7.05181740961225 6.34987957271191 0.174335127406386 0.168168022633991 0.176569018921281 0.171985064608732 0.172337127608613 0.172219766786687 0.174368087311016 0.165197890209615 0.172198406339778 0.169532091493876 0.168908830901622 0.166962805706478 0.164984517829626 0.170936177460401 0.169953221215105 0.168409254706469 0.169566901356772 0.173659357670434 0.170034441684453 2 2 + 17714999 17715794 17715500.273 17711910 17716025 + gene protein_coding_gene FALSE TRUE AT2G42520.1 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 37 (EC 3.6.1.-) (RH37) [Arabidopsis Thaliana] (GB:Q84W89;GB:Q9SIN6); similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G58510.3); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G58570.1); similar to Os07g0202100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059135.1); similar to Os03g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051626.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE89166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.355289173994569 2.75729203081923 0.0188161130870018 1 2.24428345400759 14.2524852117984 0.355289173994569 0.165240558035956
AT2G20290_at 2.30799530181776 2.38604653535385 2.43374216639992 2.21021169054609 2.63955669711013 2.44279403263024 4.85643137860725 3.97423758423639 3.28551514898061 3.77183352460876 3.80026394927942 3.99890942511728 3.69828767424169 3.90159300349187 3.58887521495174 3.81085274666909 3.97228133413872 3.69234782928695 3.62072378670554 0.221700488951453 0.220989428721742 0.2235800357139 0.224802625936505 0.220989428721742 0.231317842434359 0.248801562572114 0.231281705224202 0.23356220873498 0.222911907940783 0.220989428721742 0.224309753248125 0.229265824532531 0.224293772977595 0.226597088659788 0.226444849026739 0.224643763870204 0.224920342664785 0.220989428721742 2 2|0 -|/ 8750359 8751564 8750933.5 8750356 8758959 - gene protein_coding_gene FALSE TRUE AT2G20290.1 XIG (Myosin-like protein XIG); motor/ protein binding member of Myosin-like proteins similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to MYA2 (ARABIDOPSIS MYOSIN) [Arabidopsis thaliana] (TAIR:AT5G43900.1); similar to XIB (Myosin-like protein XIB) [Arabidopsis thaliana] (TAIR:AT1G04160.1); similar to myosin subfamily XI heavy chain [Petroselinum crispum] (GB:AAK21311.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71528.1); similar to IQ calmodulin-binding re (GB:ABE82655.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.350516321475044 -2.75583141667054 0.0188650964429678 1 2.24199795673462 6.59001886529373 -0.350516321475044 0.161696346193659
AT1G44790_at 7.75290697600681 7.9046464568579 8.03897249557429 8.03515908554027 7.87281222359872 7.47295924123426 7.50523885327803 7.44893728919014 6.91278566766932 7.11459744651405 7.18554357646571 7.70792800727453 6.90165701600909 7.3922914065663 7.1543119653736 7.9404678111214 7.33899354280624 7.46938818794268 7.2033884478965 0.223129149887641 0.216185015068978 0.224815140735709 0.225694869835644 0.221755861451763 0.224141919796872 0.215434748428831 0.227013020407398 0.238408692874056 0.222282716267482 0.218239151956740 0.217907368893268 0.216112395166110 0.230929008470358 0.220047246477094 0.218849761270472 0.233776504187276 0.230090169653832 0.218046547712304 1 1|0 -|/ 16914916 16915949 16915362.286 16914594 16916104 - gene protein_coding_gene FALSE TRUE AT1G44790.1 ChaC-like family protein similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT4G31290.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to Os04g0448600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052924.1); similar to meloidogyne-induced (GB:ABA46779.1); contains InterPro domain ChaC-like protein; (InterPro:IPR006840) 0.255721101410993 2.75514166138806 0.0188882722839842 1 2.24091869587846 14.9855773492708 0.255721101410993 0.0746529188832278
AT4G00755_at 5.3319328284023 5.43694569375419 5.00083671211841 4.55796181160224 6.45929097049584 5.7231417423762 6.92551385650632 7.02138988302702 6.91797457971255 6.33823439617595 7.14195676608335 7.19148812914225 6.83966806064769 6.85524205378887 6.91210391570761 6.4661513149272 6.19443693640188 6.29273680431024 6.74151605216752 0.238969902910204 0.233864036936484 0.228304917980942 0.226245861714499 0.222073217590714 0.227079897654690 0.229055835859701 0.217972622373015 0.221781063924217 0.220141503257386 0.227910014604149 0.224123893908734 0.229392563687016 0.228086436624163 0.221339358781068 0.214533839294729 0.232508688762975 0.221173299097188 0.225119477840365 4 4 + 326010 326713 326341.091 324982 327008 + gene protein_coding_gene FALSE TRUE AT4G00755.1|AT4G00755.2 F-box family protein similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE88268.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.336411550666742 -2.75469471294383 0.0189033049253441 1 2.24021936696564 12.5084423574410 -0.336411550666742 0.150694126997841
AT2G04750_at 0.223724770626812 0.316292114434459 0.427705819758118 0.545487184697894 0.436515332576704 0.836505812493398 0.543843433484188 0.0583599197933748 0.170127238293131 -0.253258339404618 0.222893719840993 0.190490893179956 0.642145444096585 0.463404572057725 0.560246447578758 -0.0270006384741952 0.517326167451057 0.623662901346548 0.362561664164126 0.215070612408859 0.215951298756997 0.221332525195691 0.219530787573032 0.215070612408859 0.221975868603103 0.218469139674413 0.215070612408859 0.223253265570173 0.219247806472733 0.215070612408859 0.215070612408859 0.215070612408859 0.218038463496614 0.219582195556808 0.217719194636023 0.223081921241829 0.215070612408859 0.22545952783991 2 2|0 -|/ 1659779 1660631 1660117.6 1659759 1662745 - gene protein_coding_gene FALSE TRUE AT2G04750.1 fimbrin-like protein, putative similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G35700.1); similar to ATFIM1 (Arabidopsis thaliana fimbrin 1), actin binding [Arabidopsis thaliana] (TAIR:AT4G26700.2); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G55400.1); similar to Os02g0588300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047274.1); similar to Os02g0719100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047943.1); similar to fimbrin/plastin-like [Triticum aestivum] (GB:AAC49813.1); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) 0.291000572581976 2.75347138947485 0.0189445110670437 1 2.23830531142863 0.669699153184231 0.291000572581976 0.111901993662619
AT2G41710_at 6.00931445452819 6.30958470798851 5.84418068264436 5.68856954383891 6.48237089899308 6.39436083922306 4.78641305641039 5.0183843542442 5.7777587955972 5.72215484738156 6.11743241787267 6.08241877472739 6.13348088486498 5.51817535089575 5.94039152729492 6.2013587939644 6.27069201281217 5.59986286077242 6.64004687309139 0.240922750674808 0.230217351378058 0.230342088938161 0.238697740848152 0.229963166814321 0.236367538794384 0.246517394389581 0.239783881652929 0.241198470354172 0.234703617827057 0.234309080310531 0.236364045635975 0.234517764777845 0.241778159127103 0.230198401532503 0.23508026222908 0.234630156428073 0.239288145763172 0.23124457583868 2 2 - 17407377 17407995 17407742.273 17407100 17410128 - gene protein_coding_gene FALSE TRUE AT2G41710.1|AT2G41710.2 ovule development protein, putative similar to WRI1 (WRINKLED 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G54320.3); similar to AP2/EREBP transcription factor [Brassica napus] (GB:ABD16282.1); similar to Os09g0423800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063215.1); similar to Os05g0389000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055431.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.25388471021295 2.75328556824078 0.0189507780440887 1 2.23801457503285 11.8314623588625 0.25388471021295 0.0725867891202446
AT1G08080_at 1.73955669772471 1.92220815700658 2.04726033627441 2.22700492097891 1.57911038777615 2.06817006177895 1.79035708773061 1.70227009543954 1.79224721845519 2.10022519469506 2.67510968459582 2.01634595791974 2.62165863591794 2.13289576049432 2.59436289428364 2.7918557094368 2.89068367998685 2.01739837224523 2.43290987597274 0.217417511589602 0.235303549313914 0.21461717783448 0.221250201335233 0.213743114494394 0.215537092096617 0.220267388100544 0.221730270725112 0.219143138016781 0.229924849577205 0.218561383860659 0.212555818986689 0.217591179335441 0.212737693338629 0.219311366467497 0.218178990724221 0.221119066863339 0.218656663527944 0.221333673730898 1 1|0 -|/ 2517029 2518208 2517500.6 2516988 2518543 - gene protein_coding_gene FALSE TRUE AT1G08080.1 carbonic anhydrase family protein similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G08065.1); similar to putative dioscorin class A precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD09854.1); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148) 0.275433245522897 2.75328105974623 0.0189509301224915 1 2.23800752105048 4.17249201803925 0.275433245522897 0.0967572681638566
AT2G40290_at 7.71897899084618 7.92222496619974 7.57534385335324 7.58311762658196 7.52835024865987 7.25115388096695 7.7339008842443 7.96909234393392 7.3147339398989 7.51782061519393 6.9553730716894 7.4067550592119 6.80030650425901 7.21838575873535 7.86566152733393 6.96151551022988 7.18994068455216 7.09375467515079 7.19272736694076 0.163790862033830 0.171060346176619 0.157599664495442 0.157599664495442 0.162051872378043 0.169192906583884 0.168558724374288 0.173654271065122 0.171070447818736 0.164482240991874 0.158827297926438 0.157599664495442 0.173378492588582 0.161939046334284 0.167091465424866 0.162164810180039 0.167428549549804 0.165534884957273 0.165285227798252 2 0|2 /|- 16836117 16837272 16836770.444 16835844 16838132 - gene protein_coding_gene FALSE TRUE AT2G40290.1|AT2G40290.2|AT2G40290.3 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative|RNA binding similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to eukaryotic translation initiation factor 2 alpha [Oryza sativa (indica cultivar-group)] (GB:CAI29542.1); similar to Os03g0296400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049829.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Eukaryotic translation initiation factor 2, alpha subunit; (InterPro:IPR011488)|similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to eukaryotic translation initiation factor 2 alpha [Oryza sativa (indica cultivar-group)] (GB:CAI29542.1); similar to Os03g0296400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049829.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Eukaryotic translation initiation factor 2, alpha subunit; (InterPro:IPR011488) -0.253428467849045 -2.75263801759381 0.0189726333642778 1 2.23700142826439 14.9243814691349 -0.253428467849045 0.0720876452360069
AT4G38225_at 8.98985128067662 8.74312384723627 8.71395107355748 8.5259893558802 8.67124952777858 9.02615462010447 8.93191636721215 9.15010369766432 9.49409377564502 9.1857703526359 8.88073576717573 8.91073333429129 8.9575911238501 8.83779999083413 9.06883596190062 9.25741005017864 9.11338648443235 8.85084807278476 9.22863762008372 0.104374786716957 0.0990442049276603 0.0998988137790919 0.103040209277395 0.102701642343365 0.100196766330612 0.0997990668614067 0.101002482236205 0.100287681511243 0.108964267490356 0.105267581980540 0.0977781902204773 0.107650722399806 0.103083113243273 0.0977486532893362 0.103733373560772 0.096801725338464 0.101596761975109 0.0963537167418935 4 4|0 +|/ 17927842 17928451 17928137.2 17927192 17928888 + gene protein_coding_gene FALSE TRUE AT4G38225.1|AT4G38225.2|AT4G38225.3 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93783.1); contains domain PROTEASE-RELATED (PTHR11014:SF1); contains domain PROTEASE M20-RELATED (PTHR11014)|similar to Os03g0128800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048843.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85397.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93783.1); contains domain PROTEASE-RELATED (PTHR11014:SF1); contains domain PROTEASE M20-RELATED (PTHR11014) -0.268789485903878 -2.75251199015599 0.0189768898006885 1 2.23680425016772 17.987793228415 -0.268789485903878 0.0898830946272023
AT1G15420_at 4.77983678827656 5.40602541489682 4.56884407227492 4.80369301301871 4.67846973179551 4.64152321603518 4.91993193270776 5.64972150478995 3.41398037564914 4.20634359628964 3.71345276759743 3.83305548418549 3.5727236911991 3.06776174184102 3.94560402066513 4.20416191376923 3.47667510517127 4.15769309353095 4.24772231503605 0.284839754097674 0.284839754097674 0.285231421613516 0.286812362998108 0.284839754097674 0.287799069258740 0.284839754097674 0.284839754097674 0.296615456183825 0.284839754097674 0.284839754097674 0.291262408482504 0.292546753572251 0.291427772620619 0.290548663577789 0.284839754097674 0.289642629424779 0.284839754097674 0.288156745461024 1 1 - 5301923 5302783 5302492.889 5301608 5303385 - gene protein_coding_gene FALSE TRUE AT1G15420.1 similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G11240.1); similar to Os12g0634800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067356.1); similar to Os01g0649000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043716.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF99021.1); contains InterPro domain Protein of unknown function NUC189, C-terminal; (InterPro:IPR012979) -0.362685426816672 -2.75200236660281 0.0189941114645202 1 2.23600691872972 8.7822089123427 -0.362685426816672 0.171422335614666
AT1G23590_at 1.93981906419839 2.24578150026339 1.96741504254822 2.23970980564692 2.03477476759795 1.84168085983191 1.88561078950883 2.31826754312320 2.41286322006228 2.86720550263138 1.83957679132050 2.25924450666764 2.12063108206217 1.92030399458101 1.89176786750801 2.0620281730631 2.29867810809891 2.02501484406346 2.36917509095354 0.229053627845680 0.226917755836311 0.236179043895814 0.226917755836311 0.234683274626444 0.234754243160859 0.236354254247622 0.229822856784196 0.238894812584939 0.232413334186228 0.230785462005566 0.229615246237965 0.23013329153198 0.232053484819058 0.230416894707417 0.233453419551812 0.233207660359397 0.242329989681493 0.226917755836311 1 0|1 /|- 8359530 8360042 8359854.667 8359114 8360634 - gene protein_coding_gene FALSE TRUE AT1G23590.1|AT1G23590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23600.1); similar to OBP32pep (GB:AAA79703.1); contains InterPro domain Protein of unknown function DUF220; (InterPro:IPR003863) -0.287033436164501 -2.75126967905931 0.0190188983745752 1 2.23486061411173 4.36008422599135 -0.287033436164501 0.108381771228782
AT3G57030_at 6.68437012377406 6.88783100392634 5.33533627932102 5.66164256762995 6.33844979865926 6.05518074847796 6.33916754463239 6.45353065215169 6.54329453477808 6.51865332476377 7.03944527493003 7.34593723765916 6.59489124334659 7.08806615392953 6.87519274237716 6.3806918209706 5.9748282222437 6.90860251521019 6.62039597681974 0.191347652685563 0.182089038902662 0.187578445626702 0.184852463179626 0.186650402727183 0.178062890798578 0.196345910807214 0.181224153303033 0.184718625179615 0.182020869208457 0.186258955457740 0.179376926784758 0.180418887698107 0.189662151691043 0.184268608495161 0.179777158753485 0.199635984692937 0.186410340616255 0.181251158583796 3 3 - 21112657 21113100 21112896.091 21112436 21114272 - gene protein_coding_gene FALSE TRUE AT3G57030.1 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.264198430026451 -2.75125930045429 0.0190192497152304 1 2.23484437675527 12.8878076798819 -0.264198430026451 0.084989469093133
AT4G37470_at 10.6957967511388 10.9570761852504 11.1257601138598 11.1658388956738 11.3603870919801 11.1204777441872 11.2446996343380 11.2527219888914 10.4414395473399 10.7887493826306 11.1478363507308 10.8239240997955 11.3801924114540 11.0755806976757 10.4913569518981 10.8654993158269 10.8647190567764 11.1634116125772 10.6929247855677 0.113763693938279 0.113763693938279 0.119770590825785 0.125912549674877 0.115535930204857 0.125889657873684 0.123128935244340 0.115639110576514 0.139178243702552 0.123545184387119 0.119968328240801 0.117021698983958 0.115657891746207 0.121772340398132 0.119102539131133 0.115509776407516 0.134166700905810 0.127835671457502 0.118069287846520 4 4|0 -|/ 17617070 17618075 17617280.6 17616653 17618452 - gene protein_coding_gene FALSE TRUE AT4G37470.1 hydrolase, alpha/beta fold family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G03990.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE87031.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.24553473921651 2.75037645537244 0.0190491597966018 1 2.23346318192860 21.9241462843005 0.24553473921651 0.0617914462139784
AT3G20690_at 0.991591497327681 1.34853620309227 1.07532364213648 0.87894117470319 0.930613676258925 0.717295749684912 0.955187161107652 0.897963274976958 1.38114318951997 1.69090216640583 0.7255214453436 1.08968605961674 0.713932875502172 1.05681013540120 1.23912010099903 0.816200062071839 1.10258227170364 1.36115530716646 1.08307325949939 0.211510303147491 0.209173858587146 0.211869509446871 0.214892943201754 0.209173858587146 0.210110604263504 0.210050764641606 0.219719533841447 0.211986195598452 0.214959037563760 0.209834207174377 0.21120096653888 0.218435709208406 0.209173858587146 0.22071360663854 0.211094831923868 0.212123699004283 0.217348499562866 0.218452872035352 3 3 - 7231615 7232119 7231827.909 7231576 7232688 - gene protein_coding_gene FALSE TRUE AT3G20690.1 F-box protein-related similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G20700.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE89134.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE85493.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.259844739839871 -2.74966346358350 0.0190733495537128 1 2.23234774659067 2.17351433276133 -0.259844739839871 0.080196359530197
AT1G64020_at -0.285377682770633 0.284015483124864 -0.104740834674175 0.151525383688100 0.198887859391500 0.0670063430554692 0.0455349045217333 0.187661082726722 0.71978745392364 0.225316319643992 -0.0210940499448567 -0.266179264986297 -0.334969033690041 0.445359142682218 0.251279633048578 0.135270124686063 -0.0515243562980672 0.00721287905617069 0.928874359357117 0.211668409377056 0.207490062829301 0.206748305783893 0.213521497539407 0.206748305783893 0.211249663785169 0.210832118927013 0.206748305783893 0.221795336895008 0.214227291368876 0.207792198616575 0.214847874883298 0.208958000373544 0.208076121671232 0.206748305783893 0.206748305783893 0.210302995704476 0.209173703682119 0.209715456889970 1 1 - 23755453 23755727 23755593.273 23755419 23755784 - gene protein_coding_gene FALSE TRUE AT1G64020.1 serpin-related / serine protease inhibitor-related similar to serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G64030.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) -0.291889376178905 -2.74924771443179 0.0190874688329701 1 2.23169734178816 0.39072844836335 -0.291889376178905 0.113145666558727
AT1G14570_at 8.99546109633795 9.00515813113062 8.9083126722939 9.06275929773891 9.3360750645579 9.09803908690973 8.77069706544062 8.75415501420118 8.27022294927597 8.74879028996035 8.98962618129528 8.88105067122788 8.92262053430927 8.80218109648548 8.7317777748041 9.02012948198743 8.35734227341492 8.78002933067388 8.64834141530175 0.112309879922759 0.113729198011028 0.113806921906594 0.112555519810561 0.113774983414772 0.107334071793011 0.107343056190314 0.120049169017451 0.134570257301849 0.111557546747589 0.112455712715292 0.108101362826758 0.113984317851205 0.112739384110027 0.108316777635936 0.109470978978010 0.120221717715019 0.112036388310418 0.110240401408603 1 1 + 4986437 4987158 4986766.818 4983530 4987370 + gene protein_coding_gene FALSE TRUE AT1G14570.1|AT1G14570.2|AT1G14570.3|AT1G14570.4 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14250.1); similar to Os04g0670800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054216.1); similar to OSJNBa0043A12.36 [Oryza sativa (japonica cultivar-group)] (GB:CAE02831.2); similar to UAS; UBA-like; Thioredoxin-like fold [Medicago truncatula] (GB:ABE87214.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UAS; (InterPro:IPR006577); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903)|similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14250.1); similar to Os04g0670800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054216.1); similar to OSJNBa0043A12.36 [Oryza sativa (japonica cultivar-group)] (GB:CAE02831.2); similar to UAS; UBA-like; Thioredoxin-like fold [Medicago truncatula] (GB:ABE87214.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UAS; (InterPro:IPR006577); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.237369243388135 2.74887972519342 0.0190999748134165 1 2.23112166030295 17.6745219550117 0.237369243388135 0.0492165025983291
AT4G14230_at 9.34240320522016 9.30704061761076 8.91713008988771 8.88019729828291 9.67072481293355 8.92750227508325 8.86475613585687 8.72933064696847 8.4038468866466 8.171571845052 8.78524372068238 8.63447221051135 8.50624992459393 8.8979358191346 9.13022910380494 8.36589557855063 8.42653202019358 8.69576282310088 7.70787947547041 0.13836693840974 0.138300969496476 0.142692594123739 0.143241916722280 0.142872903951782 0.159330541808090 0.145168863239177 0.144737804453844 0.153119352377640 0.141892663252575 0.13847980640247 0.140062632518314 0.142017645484149 0.14042105613211 0.140294685537873 0.141409283126354 0.146923330954106 0.138404701214984 0.157128048201801 4 4 - 8200862 8201480 8201136.364 8200688 8203233 - gene protein_coding_gene FALSE TRUE AT4G14230.1 CBS domain-containing protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14240.1); similar to Os05g0395300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055462.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07635.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) 0.311931690990665 2.74874993543451 0.0191043876161968 1 2.23091861906787 17.4672470781277 0.311931690990665 0.131034992506931
AT1G13380_at 6.56422191535847 7.0730550716511 6.02442044334569 6.54124161297576 7.7910036770798 7.44620585364648 6.71743464990736 6.69259336975853 5.89165305436689 6.10315974384435 7.16138920064264 6.98230739717022 6.55195673188594 6.33723233317897 6.69568828621454 6.58736452184517 6.7452096201467 5.92568633454827 6.51368567981948 0.249190861726455 0.237137375910735 0.245479782216797 0.254925718206839 0.253701531322077 0.253882823810365 0.240349821540921 0.261750774993855 0.274155965460317 0.247902278641056 0.253333172931814 0.237137375910735 0.251423046001377 0.240200061039586 0.24716295889868 0.237137375910735 0.249523434918339 0.260204057884727 0.240895975141196 1 1|0 -|/ 4589233 4590333 4589782.7 4589068 4590420 - gene protein_coding_gene FALSE TRUE AT1G13380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27435.1); similar to Os09g0281300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062767.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.321373227810105 2.74841841017195 0.0191156639563554 1 2.23039998939088 13.2526989721559 0.321373227810105 0.139039264926780
AT4G21500_at 1.06077828660666 1.33338105470068 0.992725949167415 1.28811144450316 1.17452409165150 1.75420503196742 0.961515237292911 1.02301731945729 0.939976472931069 0.424435674376294 1.17126103676015 1.12575112886009 1.12546257049389 1.27816465797547 1.69863094081081 1.25870198372757 1.39886470549915 1.81340312776025 1.52260878309752 0.235097401679 0.235097401679 0.239013176585010 0.238036268408683 0.235097401679 0.239393354583646 0.236479228962462 0.235097401679 0.249866021934083 0.235097401679 0.238603728533313 0.235097401679 0.243966502357759 0.238976130886284 0.247741857814981 0.237622141550687 0.239951372556144 0.237877187531416 0.24816531444859 4 4 - 11441077 11441652 11441428.455 11440948 11441746 - gene protein_coding_gene FALSE TRUE AT4G21500.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32605.1) 0.302079181829474 2.74778491316936 0.0191372298423049 1 2.22940897756581 2.35909246647882 0.302079181829474 0.122536555186614
AT1G48180_at 2.73795094659191 2.37772749957675 2.75610131730925 2.75410086776013 2.46995957362428 2.17369778470034 2.63528834032344 2.80528221158233 3.03078056946957 3.04942052078064 2.8384387683161 2.41147789473461 2.53124263805743 2.17450492886760 2.49118236870995 2.44906194430829 2.50558796278899 2.70807634498168 2.74684290219980 0.203179963738249 0.205845183975158 0.209777234384107 0.215236428764003 0.209664461429309 0.205494286345036 0.210095822609715 0.203179963738249 0.206225995359132 0.203179963738249 0.206113925737318 0.203179963738249 0.205974807565057 0.208488614532599 0.210356054502875 0.208020439155302 0.215068960375399 0.216697794130485 0.208797946616414 1 1|0 -|/ 17796250 17796785 17796521.3 17796118 17797386 - gene protein_coding_gene FALSE TRUE AT1G48180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51670.1); contains domain Cysteine proteinases (SSF54001) -0.264624377403929 -2.74711312794837 0.0191601256110023 1 2.22835809073736 5.31678586959801 -0.264624377403929 0.085907984633399
AT3G51420_at 9.65330927620927 10.2799154018658 10.0617580332468 10.0136575524938 10.3173029195909 10.0850473699453 10.6318333315969 10.8568466636944 10.7063007342998 10.7236511167646 10.2603159368916 10.2973955330774 10.5513159032598 10.4697197224460 10.1209483901882 10.7818214380626 9.60743422733606 10.5055728733221 10.6451481082706 0.117503705351794 0.111685973001821 0.110825429081403 0.12099702943161 0.11655199249832 0.123009387734071 0.116120098836431 0.114224144103866 0.117233524621050 0.109682001424388 0.114657000728854 0.113628978715089 0.110814375217490 0.114699592804048 0.114388099733236 0.109682001424388 0.127822678759047 0.114736120801938 0.111674052415360 3 3 + 19095748 19096395 19096161.545 19095014 19096837 + gene protein_coding_gene FALSE TRUE AT3G51420.1 strictosidine synthase family protein similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.301709591447211 -2.74674443848442 0.0191727028602676 1 2.22778135187048 20.7454665633394 -0.301709591447211 0.122309685589761
AT4G10970_at 9.3235922074069 9.28455100606338 9.71581500887521 9.6122025631151 9.46442989709531 9.59681408639618 8.64931420509286 8.54268575935402 9.37565438280535 9.0367653863974 9.2273166389641 8.93381697901528 8.67990556178757 9.1616487147794 8.75143835910087 9.02309004326175 8.98965844739833 9.14106766777654 9.11434347986173 0.112884986013789 0.112933220590197 0.112276209176461 0.112943016369525 0.115029154762052 0.113648508317297 0.117281449016802 0.119239526695349 0.119387907804553 0.11689991097759 0.111328439741204 0.116057094184921 0.125550689431051 0.114187034714839 0.111475272006409 0.114793052849817 0.117936995092354 0.113780989411797 0.115685425614034 4 4|0 -|/ 6719716 6721502 6720490.222 6719203 6722216 - gene protein_coding_gene FALSE TRUE AT4G10970.1|AT4G10970.2|AT4G10970.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23910.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05314.1) 0.230092323106742 2.74637030234841 0.0191854743125853 1 2.2271960995665 18.3557158672742 0.230092323106742 0.0351070521823624
AT1G73600_at 12.1876512146060 12.3281123525256 13.0295102155268 12.9614161890233 12.8497905100764 12.5474177281378 13.5862885100275 13.4251599249214 12.3131331299350 13.4813365632059 13.4730672598355 13.4679047315915 13.6849072331482 13.5084566522868 12.9563108213817 13.7749638549757 13.6960786884444 13.5241268660843 13.1480593545675 0.0713017753579031 0.070352548077172 0.067856406810697 0.068206592866002 0.0674675448711642 0.0730340832120382 0.070972607480149 0.0709998996260073 0.0759160667110394 0.0679840767822861 0.0681531044500343 0.067134553983635 0.0725666914186985 0.0690162107109487 0.0694313600190792 0.067134553983635 0.0771866297021015 0.068799384143459 0.0677307394277445 1 1 + 27676220 27677028 27676460.545 27672813 27677233 + gene protein_coding_gene FALSE TRUE AT1G73600.1|AT1G73600.2 phosphoethanolamine N-methyltransferase 3, putative (NMT3) Identical to Putative phosphoethanolamine N-methyltransferase 3 (EC 2.1.1.103) (NMT3) [Arabidopsis Thaliana] (GB:Q9C6B9;GB:Q9C9V1); similar to NMT1 (N-METHYLTRANSFERASE 1), phosphoethanolamine N-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G18000.1); similar to phosphoethanolamine N-methyltransferase 2, putative (NMT2) [Arabidopsis thaliana] (TAIR:AT1G48600.2); similar to phosphoethanolamine N-methyltransferase [Aster tripolium] (GB:BAC57960.1); similar to Putative phosphoethanolamine N-methyltransferase 3 (GB:Q9C6B9); similar to phosphoethanolamine N-methyltransferase [Brassica napus] (GB:AAP83582.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.247557328868323 2.74611054680193 0.019194346265789 1 2.22678977412500 26.1102033452912 0.247557328868323 0.0651563674245012
AT3G56930_at 3.00077780823351 3.07342779041721 2.84003097466725 2.98245813984895 3.31090621710221 2.76629859582077 2.90202688203421 2.93045276848259 3.19996475914659 2.72076614795246 3.76057586928925 3.87084826017466 3.40228387947148 3.82406519431903 3.66248582403067 3.60460686334625 3.13618006891334 3.27588542908089 3.11777027702123 0.210136392065228 0.205772308091727 0.209879022420415 0.21188525688492 0.20844273092017 0.212573008140557 0.204651298518875 0.208204220937575 0.206585325888405 0.206896276496459 0.204651298518875 0.204651298518875 0.208290703908963 0.206926817300494 0.204651298518875 0.205296238686711 0.211319477216862 0.221370559965799 0.205118502290038 3 3 + 21086294 21086826 21086579.545 21084474 21087293 + gene protein_coding_gene FALSE TRUE AT3G56930.1 zinc finger (DHHC type) family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G05070.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE79846.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.276267432553008 2.74601527426484 0.0191976013233839 1 2.22664074384704 6.26577247288498 0.276267432553008 0.0983475926576712
AT1G09390_at 5.89253810360441 5.8432384821719 5.3507075752512 5.49734472601239 6.31631045334544 6.4923504782855 6.26136946995228 6.36859967976751 7.31493751821218 7.12217636856772 7.56155392089698 7.68624461409363 7.57624488493206 7.97749558716103 8.12766914528521 7.59308400855914 7.48603898334099 7.4798320336834 6.68172090006086 0.205827142033340 0.206846317548989 0.214518571329004 0.223818132152973 0.207931220769760 0.209438262258006 0.207887054108482 0.214195624674630 0.213897706607285 0.204651112111215 0.201670735972458 0.200749605913628 0.201693268969225 0.205445463362392 0.212169470762122 0.205964482091758 0.206182929376589 0.206346326989146 0.203168212000466 1 1 + 3032468 3033361 3033008.455 3031205 3033584 + gene protein_coding_gene FALSE TRUE AT1G09390.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85172.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.234575337990039 2.7459978625632 0.0191981962665754 1 2.22661350760195 13.3656233674776 0.234575337990039 0.0446002242657327
AT1G16810_at 9.56127721355 9.5415604676177 9.61032439869403 9.80220078449358 9.96346128727657 10.0416737918371 8.94253171466496 9.40288907134718 9.56585260970843 9.65472865792866 9.84998242111824 9.85801735843867 9.72680461623744 9.7939619503838 9.47011831642415 9.8309860126597 9.45003239112339 9.47075329447919 9.70541045923896 0.129574392981204 0.127308927021621 0.125055320207152 0.123740834592442 0.132387794834934 0.123286515600828 0.120844536750644 0.127574904333131 0.13402032376614 0.122457068007342 0.134274615808143 0.135056663427843 0.128834279974254 0.129324243154231 0.124768269436793 0.122779584608189 0.132110376865212 0.129179644378985 0.127779040426713 1 1 + 5756145 5756661 5756532.364 5755581 5756888 + gene protein_coding_gene FALSE TRUE AT1G16810.1|AT1G16810.2 similar to CGI-144-like protein [Solanum lycopersicum] (GB:CAC81814.1); similar to Os02g0727500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047997.1); contains domain FAMILY NOT NAMED (PTHR13282); contains domain gb def: F6I1.17 protein (F17F16.8/F17F16.8) (Hypothetical protein) (At1g16810/F17F16.8) (PTHR13282:SF1) 0.265842625798203 2.74543674472137 0.0192173790164993 1 2.22573578725047 19.2699044848852 0.265842625798203 0.087431386431723
AT1G36990_at 5.14043315371782 5.20620894911466 5.044923401927 5.09362576145666 5.70025861572283 5.72595912853956 5.32518867696481 4.9915361485302 4.69251584742432 4.53999453187702 4.84741451305052 5.05009536662726 5.35677564953991 5.0937442717753 4.75963123418938 5.09811247177701 5.27883126538856 4.42560518102878 4.94847063356311 0.218646995496291 0.224735911457298 0.226706857275812 0.219933725211974 0.227698425345938 0.228481506761257 0.218646995496291 0.222012600497291 0.237318874807023 0.218686183236728 0.219107152719246 0.218646995496291 0.223081979879792 0.234610229194133 0.226976406174688 0.228299746995877 0.222368960920787 0.220002262767159 0.218646995496291 1 1 - 14030076 14030685 14030473.273 14029733 14032941 - gene protein_coding_gene FALSE TRUE AT1G36990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08510.1); similar to Os04g0448200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052921.1); similar to proteophosphoglycan ppg1 [Leishmania major strain Friedlin] (GB:XP_843164.1); similar to OSJNBa0064H22.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01568.2) 0.243566284023457 2.74508377782693 0.0192294555495757 1 2.22518367186493 10.1364016870601 0.243566284023457 0.0596179975687539
AT4G24350_at 6.90180936534906 6.93851586007299 5.04238580645703 4.73527440409666 5.60923494164578 5.49374584838062 7.52337445825407 7.21722963914333 3.9734008927011 6.29527369889934 6.63956376961749 6.81288806828874 6.76536433875779 6.80305900706992 6.60271583837919 6.8688962328188 6.41503737646916 6.19016597220674 5.41245194563037 0.249429163083870 0.240299122331001 0.241579523349406 0.242102873629848 0.249371308576977 0.249458329975394 0.240901934899959 0.245477052310845 0.248644358932246 0.235122347024003 0.234706762836617 0.236089944014379 0.235457859534407 0.241272132380583 0.236851495525700 0.242259949197443 0.249299319712899 0.251780520259689 0.248802681211771 4 4|0 +|/ 12609746 12610760 12610107.889 12609538 12611477 + gene protein_coding_gene FALSE TRUE AT4G24350.1 phosphorylase family protein similar to phosphorylase family protein [Arabidopsis thaliana] (TAIR:AT4G24340.1); similar to Os05g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054970.1); similar to Os06g0112100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056591.1); similar to vegetative storage protein [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAA16342.1); contains InterPro domain Purine and other phosphorylases, family 1; (InterPro:IPR000845) -0.257451467092901 -2.74476262802164 0.0192404500423431 1 2.22468133049466 12.1148230426889 -0.257451467092901 0.0779182656896123
AT3G05360_at 1.78667838228464 1.75204030691577 2.44169990505424 2.43514666743535 1.69459423948891 1.66960030788237 1.42052710453942 0.833278947103626 1.57474327251135 1.46978457130331 1.4068713874574 1.49894170009038 1.47888433461069 1.41505435838577 1.73456641661927 1.55109331827049 1.45897262537304 1.33371726732757 1.56821352168427 0.196009746941056 0.198287188575004 0.211555070883654 0.21243124594234 0.195930487272199 0.196085765483503 0.206476242459964 0.201765089241963 0.198347297334051 0.19682185333108 0.195661770877874 0.198833533451297 0.204358537707619 0.205037620451617 0.219453462982813 0.202346870702860 0.206068402294631 0.198772552467543 0.198087626184193 3 3 - 1530914 1531466 1531184.727 1530741 1533294 - gene protein_coding_gene FALSE TRUE AT3G05360.1 disease resistance family protein / LRR family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71390.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05370.1); similar to Hcr9-Avr4-chl1 [Lycopersicon chilense] (GB:AAV41387.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.279655657802436 2.74445840449376 0.0192508708365068 1 2.22420546982319 3.26536729817961 0.279655657802436 0.101900816213872
AT2G24570_at 4.6543969103051 5.20742700484893 5.59187239722777 6.00844915562017 4.92055668220421 5.23486047795541 5.32724407227292 5.79872102446942 4.43719780396523 4.59135948504927 4.40804414181241 4.71753559686898 4.91911155833421 4.23658966116813 4.74924587060795 5.59978334284672 5.7460588554228 4.76139814472564 4.18231468040653 0.225279294688895 0.216577920328447 0.219454934261545 0.220834476598460 0.216894779718741 0.219637058696901 0.217575338031707 0.221809724743688 0.240291352208075 0.222130414382591 0.221383216727347 0.215250367327323 0.219152460725551 0.217388234735160 0.214349347357000 0.217893149790466 0.223875264254380 0.227207858256924 0.228019243516627 2 2|0 -|/ 10444779 10445853 10445484.7 10444477 10446377 - gene protein_coding_gene FALSE TRUE AT2G24570.1 WRKY17 (WRKY DNA-binding protein 17); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 17 (WRKY DNA-binding protein 17) (WRKY17) [Arabidopsis Thaliana] (GB:Q9SJA8;GB:Q93WV1); similar to WRKY11 (WRKY DNA-binding protein 11), transcription factor [Arabidopsis thaliana] (TAIR:AT4G31550.1); similar to WRKY transcription factor 11 [Capsella rubella] (GB:AAS66778.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.340292165972068 2.74407642376443 0.0192639630581030 1 2.22360798926643 9.99086340875317 0.340292165972068 0.154828891997965
AT4G22700_at 1.29450503619350 1.61158658298398 1.26428014192176 1.84023527708800 0.578045853657701 1.14882789354274 0.978600794229419 1.90586213370002 1.66561084119737 1.5132009395087 1.15379630446667 1.20609732253099 1.11770961004833 1.19119399642722 0.763093771921993 1.18316903800108 0.94787760866603 1.50964392157591 2.07430474095684 0.225665017320281 0.232179001195610 0.224963273413098 0.225052535134844 0.230371657297274 0.224963273413098 0.228885065743673 0.226263771789601 0.236854491767424 0.226408615463807 0.229293128242438 0.225687027588056 0.228458425218980 0.230554220039506 0.230757084212836 0.224963273413098 0.235140891195998 0.22850397628468 0.225973534303127 4 4 + 11933317 11933862 11933575.273 11933312 11933890 + gene protein_coding_gene FALSE TRUE AT4G22700.1 LOB domain family protein / lateral organ boundaries domain family protein (LBD32) Identical to LOB domain-containing protein 32 (LBD32) [Arabidopsis Thaliana] (GB:O49651;GB:Q4PSI2); similar to LOB domain family protein / lateral organ boundaries domain family protein (LBD35) [Arabidopsis thaliana] (TAIR:AT5G35900.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAR00592.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.428378744536856 -2.74368296502274 0.0192774579457080 1 2.22299256274113 2.77029873279418 -0.428378744536856 0.220117828699512
AT1G20575_at 6.80147040238156 7.06493664188462 6.75758101289519 7.20281711287806 7.48665277295675 7.24692381708793 6.68267510357908 6.78661182112324 6.12062667791411 5.87860806656429 6.14778410503281 6.05355832692038 6.07349678719503 6.0922074103498 6.27138634912943 6.49528649802296 6.04855589868373 6.16487911379418 5.85724576153432 0.195403042870477 0.192227161596948 0.192700106019725 0.193328075392419 0.187661688918919 0.196364746206173 0.192030335153956 0.192451984543907 0.198257973708104 0.190753693122025 0.192111578940047 0.187661688918919 0.187661688918919 0.206302036886207 0.192549657578624 0.187661688918919 0.200637828839025 0.192308608437029 0.195466924252431 1 1|0 -|/ 7126990 7128069 7127548.571 7126762 7128735 - gene protein_coding_gene FALSE TRUE AT1G20575.1 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative similar to glycosyl transferase family 2 protein [Arabidopsis thaliana] (TAIR:AT2G39630.1); similar to dolichyl-phosphate mannosyltransferase polypeptide 1 [Homo sapiens] (GB:NP_003850.1); similar to Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit [Homo sapiens] (GB:AAH08466.1); similar to Os03g0824400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051751.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.277902164591246 2.74300828628434 0.0193006200402836 1 2.22193728518523 13.0639858255043 0.277902164591246 0.100300437523050
AT3G19100_at 2.29242694151961 2.60070272401199 1.42229699960474 1.44650646820494 1.85984539397311 2.17981783491579 1.63968258364621 1.84426144407247 2.03997187910115 1.94266146376751 1.52294125428403 1.81227258850324 1.58513055207102 1.56533075784137 2.38151135243594 1.70410788048446 1.57797829582995 1.89991595588407 1.76337272042203 0.211049855217396 0.216946190864331 0.218804355070823 0.214830014824187 0.208337215864110 0.211349039773221 0.208337215864110 0.231497268133050 0.220069573956073 0.213988328100495 0.208551940877753 0.216700200959124 0.214470940167713 0.223691927562461 0.215133469765842 0.210724336529014 0.220400748093172 0.235594358830218 0.213534952403443 3 3|0 +|/ 6608019 6608951 6608529.125 6605482 6609301 + gene protein_coding_gene FALSE TRUE AT3G19100.1 calcium-dependent protein kinase, putative / CDPK, putative similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to CRK1 (CDPK-RELATED KINASE 1), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41140.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT1G49580.1); similar to CDPK-related protein kinase [Gossypium hirsutum] (GB:AAZ83348.1); similar to calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum] (GB:AAL30820.1); similar to CDPK-related protein kinase (PK421) (GB:P53681); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.263169261950697 -2.74273256072563 0.0193100938191952 1 2.22150602420933 3.7464345157921 -0.263169261950697 0.0847534981099473
AT4G10130_at 3.72967434592948 4.2989315594298 3.95463262188138 4.44034941613721 4.88041694772919 4.46166777209096 3.97470167143316 4.21940821384668 3.71900356342462 3.19072153813456 3.67891452173022 3.64791602585513 3.40574393317663 3.87882995809077 4.00570599268501 3.70240786522654 3.69427721762831 3.47283403535136 3.2468430496944 0.236980494540762 0.222482097837623 0.232342145765753 0.223856150507872 0.222482097837623 0.237570251746375 0.231221495562816 0.222482097837623 0.248156999573832 0.230259076471890 0.222482097837623 0.227688031031724 0.232496147354231 0.227723156716713 0.228071300937062 0.224744107454827 0.230387598780384 0.226791872963067 0.233597982069082 4 4 - 6320972 6321455 6321243.364 6320630 6321639 - gene protein_coding_gene FALSE TRUE AT4G10130.1 DNAJ heat shock N-terminal domain-containing protein similar to ATJ3 (Arabidopsis thaliana DnaJ homologue 3) [Arabidopsis thaliana] (TAIR:AT3G44110.2); similar to Os09g0460000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063385.1); similar to Os08g0474600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062029.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE78176.1); contains InterPro domain Zinc finger, DHP-type; (InterPro:IPR007872); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.339446859216685 2.74241748604469 0.0193209252763387 1 2.22101322209118 7.78064852396099 0.339446859216685 0.154320398140938
AT1G46696_at 1.72498652677731 1.24674746274881 1.26363775242074 1.25472334565380 0.814378504251014 1.17671939702096 1.45703100539134 1.64188544083366 2.29636808216426 1.54023484721371 1.88989715321224 1.21752526030882 1.77033737251844 1.50930053930809 1.82961445398228 1.20454641900651 1.52366702058644 2.04379795513991 1.58102784138809 0.199844793002351 0.201271446779148 0.203031735715107 0.205942936833158 0.204368660509439 0.202337663034361 0.202994983326726 0.211662328725729 0.204908925157988 0.211073919899985 0.204684089385142 0.199844793002351 0.204460504945843 0.210167810757850 0.208813135539313 0.200483780353093 0.200251665090734 0.218380170214215 0.206154139713677 1 1 - 17264350 17264857 17264574.091 17264300 17266623 - gene protein_coding_gene FALSE TRUE AT1G46696.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G03830.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF601; (InterPro:IPR006736) -0.286294505465999 -2.74138833243839 0.0193563470631162 1 2.21940357761777 3.03724502706047 -0.286294505465999 0.108660436894445
AT3G14330_at 4.62489384315109 5.07141764678122 3.79246334315185 4.07818714489507 4.73755377942465 4.79506951164445 5.49970032141301 4.99575517448425 3.90238846266328 4.81848520982466 4.37236992222122 5.22402568994463 4.09011981855892 4.41625528115301 5.24755523844222 4.62244511843887 4.14098880946005 4.21768582672614 4.65031919975791 0.204126713319296 0.207544511431489 0.209366063390115 0.206429560523298 0.205601396772181 0.206169266691620 0.200475945735578 0.211553748175146 0.205564065626754 0.205256629918295 0.201355671385735 0.202346320091739 0.211783967649069 0.207865035812284 0.207595796927271 0.203868896393794 0.205147770020357 0.213733782958580 0.210537816839324 3 3 - 4779708 4780267 4779921.909 4779695 4782459 - gene protein_coding_gene FALSE TRUE AT3G14330.1 pentatricopeptide (PPR) repeat-containing protein similar to CRR2 (CHLORORESPIRATORY REDUCTION 2), binding [Arabidopsis thaliana] (TAIR:AT3G46790.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD33343.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.306378439654437 -2.74118746566416 0.0193632681008014 1 2.2190894187399 9.19862759755157 -0.306378439654437 0.126967220584691
AT3G06060_at 5.5983976180305 6.18953558061414 4.23416816087281 4.79555063191081 5.24355704911409 5.58209070965441 5.59095273957814 5.85967214672223 6.81476470675804 6.37496259482626 7.03041520025184 7.0045998390645 6.81784140095278 7.1489737014477 7.1843638006152 6.35051995601073 5.43265730102435 6.44090370820836 6.37805395809636 0.192209156386976 0.187063430808258 0.202769529862860 0.198634927143799 0.183392667683148 0.189296091497776 0.189132096966876 0.184147942712740 0.190859084424069 0.183537435287486 0.188485759308442 0.182886451815804 0.183727676178844 0.186777586608268 0.184392173107550 0.188540502234231 0.206218696916222 0.18245180001651 0.193393145266751 3 3|0 -|/ 1828459 1829692 1829001.3 1827986 1830206 - gene protein_coding_gene FALSE TRUE AT3G06060.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G19200.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE89395.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.346053636564088 -2.74099270045074 0.0193699812546838 1 2.21878480473092 11.9861796378990 -0.346053636564088 0.159680749041464
AT2G47830_at 5.49790123119635 5.36087742579324 5.32044597910194 4.91610675860435 5.8437815041083 5.51032045705025 4.52983960042983 4.47134299118099 4.11536657520932 4.18645031160169 3.90997388999067 4.89809048005367 4.23397639478794 4.83220387975265 3.67273939445429 4.50591458363069 4.30767524787792 4.10484678686356 4.29004202132901 0.246125602495775 0.242516029116419 0.245128469088636 0.244044649672899 0.242495305442429 0.266490845039389 0.240150552626551 0.247338477255204 0.259401664183539 0.238955747074627 0.241006288481109 0.247780882558467 0.238955747074627 0.239399991411883 0.251518840205981 0.241925984825301 0.260328626871173 0.239821529329629 0.252280424040625 2 2|0 -|/ 19598180 19599205 19598568.556 19597926 19601067 - gene protein_coding_gene FALSE TRUE AT2G47830.1|AT2G47830.2 cation efflux family protein / metal tolerance protein, putative (MTPc1) Identical to Metal tolerance protein C1 (AtMTPc1) (MTPC1) [Arabidopsis Thaliana] (GB:Q8L725;GB:O82250); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G79520.1); similar to cation diffusion facilitator family transporter [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] (GB:YP_903918.1); similar to Os03g0346800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050094.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.271782321014596 2.74059265536356 0.019383777243489 1 2.21815913768434 9.43405893587804 0.271782321014596 0.0942923795952992
AT3G62590_at 4.44516837681233 4.64786665820106 5.41191650222892 5.65253363419738 5.57921474782825 5.57979329346701 4.77873479169816 4.66289030324985 4.4098675942425 4.18875858825387 3.10459697093278 1.96160028087739 3.46942689831356 3.74993696377491 2.30680574038801 3.91753239610285 4.61363018001754 3.75417036768044 2.79499764085561 0.218391738312409 0.218092134367707 0.220045852731719 0.223616013562172 0.214659264733370 0.219941506059114 0.219921979137912 0.217717780088569 0.230050469316975 0.213687662997496 0.215613910217103 0.218634513052289 0.218899302502198 0.216486010257859 0.234753371008985 0.212602010442369 0.215449923380533 0.220780147099114 0.217134465077925 3 3 - 23158966 23159581 23159234.636 23158894 23161328 - gene protein_coding_gene FALSE TRUE AT3G62590.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G02660.1); similar to Lipase, class 3 [Medicago truncatula] (GB:ABE90993.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.242018689458492 2.73969711649118 0.0194146963146241 1 2.21675855181796 8.67355832973283 0.242018689458492 0.0580193931630709
AT4G27350_at 2.34125011848947 2.87986649887311 2.89818765039345 2.78491187180773 2.45788794360766 2.47059114892759 3.40643816345288 3.40227616772927 3.50352382215793 3.23738020398261 3.06690575782445 3.14167900610871 2.85634425513096 3.05900889167711 3.23402998600121 3.56058938991893 3.12217954495502 3.34918935023687 3.35174214590519 0.166740360723904 0.173512321602834 0.169374970133923 0.166569052516643 0.170040011965131 0.167589937833444 0.167965796328649 0.178252979873356 0.177854638843082 0.175007564764535 0.174646929323456 0.170164094038181 0.165233025607635 0.174201905792818 0.165233025607635 0.172165144913164 0.17308991966386 0.165233025607635 0.165233025607635 4 4 - 13691049 13692247 13691628 13690827 13692800 - gene protein_coding_gene FALSE TRUE AT4G27350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54240.1); similar to membrane lipoprotein lipid attachment site-containing protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAC84042.1); contains InterPro domain Protein of unknown function DUF1223; (InterPro:IPR010634) -0.272518850701164 -2.7384811668111 0.0194567563199155 1 2.21485692146921 6.09915427711693 -0.272518850701164 0.0952771937334106
AT4G02670_at 0.806507877819641 1.24546411805624 1.69606312873959 1.91076067650684 1.37431932963596 0.814070368708224 1.56692285346555 1.38322067013566 1.32317814394298 1.64980707949158 1.81676456716236 1.73880611712020 1.97672773013761 2.03639737044801 1.73370882678289 1.99930835074899 1.73498857059359 2.28393057557436 1.49319417972059 0.216673521710274 0.218346282915448 0.220396315060373 0.218354816124128 0.212930352942018 0.213587377338027 0.214857479265249 0.217012164323247 0.217010166238184 0.220351627509827 0.211187738174973 0.211252015732196 0.213749890875805 0.220657688230029 0.216635968632344 0.212859588200636 0.218494149898725 0.216448690825345 0.22937781571382 4 4 - 1176191 1176736 1176426.636 1176190 1178489 - gene protein_coding_gene FALSE TRUE AT4G02670.1 ATIDD12 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 12); nucleic acid binding / transcription factor/ zinc ion binding similar to ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 7/ATIDD7, nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G55110.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABD28501.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.312313520940499 2.73686879234976 0.0195126685546245 1 2.21233543607507 3.05156886852815 0.312313520940499 0.13251999254405
AT3G16840_at 6.36272998021301 6.14412560590231 5.89868057622168 5.99841781803681 5.89560891801666 5.52582131230556 6.62468844662714 5.93193699146343 5.69591195287869 6.33461132560459 5.47634963776068 6.10595491333996 6.1495595749531 6.11620378930994 5.62829209887823 6.09788664208864 6.3893720693926 5.49927181900623 6.40121096316478 0.211506609698094 0.215387549246665 0.210030730202843 0.218477057830028 0.218274164431114 0.221250213731381 0.225505429902856 0.216828652530500 0.225546158154847 0.209022629890659 0.20899338423041 0.217623602298044 0.218550791706715 0.224139733908249 0.214004819635182 0.225895675277978 0.21156925164384 0.209764103731012 0.236743903792677 3 3|0 -|/ 5738514 5739390 5738848.286 5737892 5743150 - gene protein_coding_gene FALSE TRUE AT3G16840.1 ATP-dependent helicase Identical to DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.1.-) (RH13) [Arabidopsis Thaliana] (GB:Q93Y39;GB:Q94AW1;GB:Q9LRY9;GB:Q9ZS07); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE88833.1); similar to Os04g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053286.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.323644097848904 -2.73622442169537 0.0195350580318777 1 2.21132778473376 12.0861375720853 -0.323644097848904 0.142113902025466
AT3G16450_at 1.77415327603823 1.71906778049312 2.08005359796349 1.77919018003291 1.30389124881018 1.48896423854056 1.88200503431419 1.71233343761252 2.27145804971816 2.32853189524068 2.07918346844778 1.6588743987365 1.78197882259679 2.08997874323882 1.67303425414543 1.92940663820940 2.22605743002871 1.78586860853495 2.27723999430547 0.201797687370849 0.198406279913072 0.201691138114336 0.197851325497237 0.197851325497237 0.20060436298564 0.202569056297937 0.198719263408593 0.198011289470624 0.197851325497237 0.202833349051855 0.208501519521239 0.205620353621260 0.19916416097722 0.206012556685707 0.198615087669198 0.204192858439303 0.197851325497237 0.206530652074225 3 3 + 5589090 5589765 5589397.818 5588400 5590033 + gene protein_coding_gene FALSE TRUE AT3G16450.1|AT3G16450.2|AT3G16450.3 jacalin lectin family protein similar to ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) [Arabidopsis thaliana] (TAIR:AT3G16440.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.249113625020102 -2.73601706163398 0.0195422684531251 1 2.21100352458483 3.81518623684919 -0.249113625020102 0.0684810498559373
AT4G27130_at 9.9212733419333 9.89373856862603 10.0006381280474 9.8844724598916 10.3998118993476 10.0842071523565 8.665236391616 8.87366496314619 9.37046553860907 9.11481779379092 9.43497995477808 8.83615274212672 9.01578135018771 8.75788890999902 8.91814165769028 8.79212816394429 9.23946271504461 8.73829442759047 9.18110532358802 0.127098174748969 0.129351302824010 0.124671967517867 0.128372377157582 0.129612919621720 0.127564150893506 0.129045604307267 0.133398351494652 0.1357585707165 0.129543959322758 0.124433136920801 0.126987921600233 0.126018819286126 0.137197450676709 0.125431314327871 0.13683792101224 0.138866636118076 0.130403166532267 0.140841984969973 4 4 - 13604948 13605274 13605187.273 13604601 13606454 - gene protein_coding_gene FALSE TRUE AT4G27130.1 eukaryotic translation initiation factor SUI1, putative Identical to Protein translation factor SUI1 homolog 1 [Arabidopsis Thaliana] (GB:P41568;GB:Q9SLK5); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT5G54760.1); similar to Protein translation factor SUI1 homolog (Translation initiation factor nps45) (GB:Q9SQF4); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874) 0.249139140877269 2.73501224692676 0.0195772458447169 1 2.20943227279752 18.8097470092036 0.249139140877269 0.0686356377884156
AT1G02070_at 2.12117925717384 1.93857950422412 2.21517587997565 2.23783339475789 2.04152145494386 2.67743849145578 1.86927943011149 1.90121169350825 2.63052364427849 1.93359214197360 2.57361171488399 2.07597124322272 2.48414025819638 2.16551944681248 1.83741241965746 2.26760416143379 2.51651407114633 2.47708037893381 1.58916521744755 0.194506658344059 0.186537286623226 0.196143897656127 0.192519240203043 0.193639995160441 0.193127253315002 0.191332285319574 0.193302955060143 0.19356822039768 0.194369364336841 0.186537286623226 0.187016267142821 0.196907545677867 0.198535386623317 0.19455956959871 0.187737993407296 0.192592879384302 0.194429565964831 0.193862946247205 1 1|0 -|/ 370467 370904 370627.8 370257 370967 - gene protein_coding_gene FALSE TRUE AT1G02070.1 similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G60520.1); similar to Os04g0551600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053498.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25766.1); similar to Os02g0658200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047633.1) 0.292033938957430 2.73490489374025 0.0195809864659 1 2.20926440523855 4.30069007811173 0.292033938957430 0.114695714562071
AT1G21380_at 8.76384405127088 8.41598397256155 8.73022256656411 8.47704975507628 8.96690758038454 8.91776705141131 8.54722623950179 8.23280124005734 7.83644679695626 7.7587662891383 7.94284541169519 8.30079618251185 7.82608639097274 7.92786291518446 7.8808665096177 7.38244654434822 7.9163250718102 7.88872143716511 7.28606610898667 0.142180320504555 0.138299485848691 0.134339804062212 0.134641112750303 0.138148913385938 0.142054685210564 0.136437497008688 0.141599335837538 0.147046659134290 0.135395487846421 0.141347313960554 0.134570065075527 0.145490217893868 0.135184053107484 0.152346554594574 0.141779420839496 0.146097052999430 0.140934675820622 0.137679652240124 1 1 - 7485927 7486290 7486121.818 7485625 7488702 - gene protein_coding_gene FALSE TRUE AT1G21380.1 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76970.1); similar to VHS and GAT domain protein [Glycine max] (GB:ABB90835.1); similar to Os11g0199700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067438.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.269586802698641 2.73457667891768 0.0195924272125783 1 2.20875118130813 16.3866437435736 0.269586802698641 0.0926094686574638
AT3G12910_at 1.32097930592385 1.30713607362037 2.34567732342033 2.52315247045316 1.35257823037225 0.881853812276817 0.609516331561485 0.844238563220556 1.5441373568707 1.0160171422176 0.675491978834456 1.23740183935435 1.30320968311759 0.910465711523142 1.30230771006945 0.920655674023838 0.601104687571752 1.17520618871723 1.11571509042118 0.210884556249524 0.212996596092035 0.216713224207423 0.226185323917565 0.213847948029221 0.211519349577681 0.215403511642864 0.210884556249524 0.21876249002368 0.210884556249524 0.216348332637307 0.210884556249524 0.214283281577284 0.214958618757030 0.214263628841368 0.210884556249524 0.210884556249524 0.210884556249524 0.212060676841349 3 3|0 +|/ 4110064 4110600 4110461.1 4109382 4110655 + gene protein_coding_gene FALSE TRUE AT3G12910.1 transcription factor similar to ANAC042 (Arabidopsis NAC domain containing protein 42), transcription factor [Arabidopsis thaliana] (TAIR:AT2G43000.1); similar to putative development regulation gene OsNAC4 protein [Oryza sativa (japonica cultivar-group)] (GB:BAC45041.1); similar to Os03g0777000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051438.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.272894230765362 2.73428979427542 0.0196024327368673 1 2.20830258924443 2.51865166251675 0.272894230765362 0.0960983419267907
AT1G66830_at 3.54485019139635 3.88207736879685 3.04130660049948 2.75985393506765 2.61329711681727 2.71168271627118 3.70526272020007 3.9992403506669 2.19791580665619 2.57627944826714 2.91016007888666 2.79542590232795 2.51004932286736 3.14571936073366 2.58329944154794 2.4984576853586 3.18378886611876 2.92093571235131 2.29694723707841 0.203879191958523 0.211875097935808 0.203879191958523 0.207004048425668 0.207066684915306 0.204022066208526 0.207806578782551 0.210494112075298 0.203941974873662 0.208522105046002 0.208854438052539 0.208498497575818 0.204957242779523 0.212289577058212 0.204213420760720 0.208086854185854 0.219940464655316 0.207142822935625 0.206840161289618 1 1 - 24934433 24934934 24934666 24934328 24936581 - gene protein_coding_gene FALSE TRUE AT1G66830.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01210.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os01g0514700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043190.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.269945258330514 -2.73409769080175 0.0196091354684861 1 2.20800220575629 5.86995989676844 -0.269945258330514 0.0930384661248814
AT3G26410_at 3.88038690809532 3.88648310950120 4.28621086561468 3.71339226362271 2.90491342342708 3.1300637976928 3.13411102667962 3.64946322076318 3.09330998912219 3.34461124483895 2.63262864937427 2.69769973227742 2.24774624767682 2.72504820514983 2.47803802367358 2.76741975179953 2.79589419448421 2.90177316269276 3.05980346805220 0.225952512934082 0.239369153814293 0.238978304211668 0.230530375219033 0.223520215778239 0.226038004473022 0.220306958097775 0.231528037823093 0.220306958097775 0.229909527023021 0.225999938193772 0.227012259587300 0.226645258202212 0.221840974611034 0.222074622231201 0.226827804342005 0.243894243004395 0.230539964885556 0.225319778440991 3 3 - 9670819 9671266 9671070.545 9670653 9672585 - gene protein_coding_gene FALSE TRUE AT3G26410.1 methyltransferase/ nucleic acid binding similar to RNA methylase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15462.1); similar to Os02g0556400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047129.1); contains InterPro domain N6 adenine-specific DNA methyltransferase, N12 class; (InterPro:IPR002296); contains InterPro domain Putative RNA methylase; (InterPro:IPR000241) -0.319546608391953 -2.733984912659 0.0196130715012671 1 2.20782586058201 6.48397269187232 -0.319546608391953 0.138923008021202
AT1G63260_at 4.32669956066556 4.65387308917485 3.40589614811596 3.11530795169286 5.30173578831896 4.45927217363461 3.95747504236268 3.82934048545999 7.19405696009586 5.74130990987001 7.27237077635162 5.90616622973341 5.48748543077486 6.17717792398141 5.90142213988242 4.93176340259259 4.1884986540826 6.40233382110317 6.16823356672637 0.22710277372802 0.224482893808152 0.235160991548971 0.238949476227754 0.231128927159611 0.228636552737616 0.233805607377052 0.227826548328903 0.231551100827472 0.224482893808152 0.233617340340919 0.224482893808152 0.228130109566200 0.233956399822555 0.242366275874 0.225670739399271 0.241275381868976 0.230927792821116 0.242142882200631 1 0|1 /|- 23470781 23471731 23471098 23470411 23472869 - gene protein_coding_gene FALSE TRUE AT1G63260.1|AT1G63260.2|AT1G63260.3 TET10 (TETRASPANIN10) Member of TETRASPANIN family similar to TET3 (TETRASPANIN3) [Arabidopsis thaliana] (TAIR:AT3G45600.1); similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein DH [Zea mays] (GB:AAV31120.1); similar to Os10g0503600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064999.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301)|similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein DH [Zea mays] (GB:AAV31120.1); similar to Os10g0503600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064999.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) -0.352879271946581 -2.73323351628234 0.019639315799631 1 2.20665095896877 10.2068345846999 -0.352879271946581 0.165775838393995
AT3G62960_at 3.50755032599566 4.24631177466672 3.26035477518552 4.04312886002306 4.27254782518003 4.26691659684172 2.63662988094055 3.53803170962718 1.94680524531128 1.96570978827056 1.75583092049464 1.81254313972137 2.14639224910965 2.64888741139043 1.70072791267923 3.55373651233227 2.41019420847741 1.77752281516547 1.44415044313151 0.267147458062252 0.263085181095421 0.277134190353362 0.271078174750670 0.262588063654767 0.298490681657314 0.263262999120805 0.262588063654767 0.269218498296137 0.272793401639019 0.266895188014302 0.264421334840723 0.273064116789262 0.268505654711517 0.265666910537437 0.272673557670348 0.276558131416156 0.269386011342067 0.265432908147839 3 3 + 23279781 23280036 23279939.455 23279685 23280299 + gene protein_coding_gene FALSE TRUE AT3G62960.1 glutaredoxin family protein Identical to Glutaredoxin-C14 (AtGrxC14) (GRXC14) [Arabidopsis Thaliana] (GB:Q9LYC5); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G47880.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.459390164383453 2.73244529343349 0.0196668838776737 1 2.20541850621394 5.72707624609543 0.459390164383453 0.242959177621844
AT1G04550_at 5.78093921404252 6.18128319158647 6.29782377478864 6.48390786314948 6.02107839496294 5.95849517739988 6.8743817667045 7.02050035197322 6.11527678674547 6.09373594237546 5.47553255110187 6.02674490618746 6.48723117066692 5.77133771167621 5.72717215936432 6.41662249658192 5.845733743773 5.83796472489484 6.36855627619662 0.188351414465898 0.197006070409744 0.192843056398086 0.197899614431364 0.201548176568538 0.194191318327965 0.187214622333573 0.189782492390605 0.207409540356458 0.195874254757794 0.188221484744623 0.197916785796288 0.190195354311455 0.19842980790668 0.195497142443979 0.186660798730296 0.206282255394600 0.191449967412284 0.188248174578757 1 1|0 +|/ 1240717 1241651 1241226.444 1240374 1242120 + gene protein_coding_gene FALSE TRUE AT1G04550.1|AT1G04550.2 IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem Identical to Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) (Protein BODENLOS) (IAA12) [Arabidopsis Thaliana] (GB:Q38830;GB:Q8LA42); similar to IAA13 (indoleacetic acid-induced protein 13), transcription factor [Arabidopsis thaliana] (TAIR:AT2G33310.1); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.258965198621573 -2.73125484725221 0.0197085926622575 1 2.20355720508853 12.3978339342276 -0.258965198621573 0.0812011666767285
AT3G01170_at 6.47378495018833 6.95521626640457 6.88429151390146 6.64025060368904 6.82948949935627 6.88195912860326 6.10247492713285 6.14925364268356 5.19045636789096 4.53852150043349 5.04447576481723 4.78460049399828 4.80320189484869 5.15221227226601 4.8327221187716 4.99661827462884 5.30164010981777 4.89703141387299 4.74325936667241 0.236116358267492 0.216944643620657 0.212510315080127 0.211709535508742 0.224875570246281 0.229366743852311 0.228156100677637 0.217290316780167 0.225992303001822 0.213850283625878 0.215711708628972 0.208347249899819 0.209254530258284 0.212850543536381 0.208347249899819 0.209607816690238 0.220951313219852 0.218906247953707 0.220738396784409 3 3 + 58109 58653 58388.909 57648 58916 + gene protein_coding_gene FALSE TRUE AT3G01170.1 structural constituent of ribosome similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G15260.1); similar to AT5g15260/F8M21_150 [Medicago truncatula] (GB:ABE80371.1); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) 0.270649477165284 2.73010231006445 0.0197490570411378 1 2.20175524694914 11.5149110020999 0.270649477165284 0.094195386000301
AT4G14600_at 3.52958094853504 3.88204193236343 3.73593482823048 3.74483824264412 4.23240746006883 4.07012149856749 3.8445042644313 3.36951153308121 3.53233503228831 3.08842612985429 3.86188046617467 3.9822535578288 3.53158869622696 3.38419182392073 3.82433256103941 3.48645007091329 3.54788718903274 3.49956746656387 3.47227455296124 0.215671319669725 0.211758912936294 0.227673205604003 0.227759412524487 0.219658852322005 0.239316809572903 0.214606992029670 0.212694180508764 0.216021251371861 0.221131940417357 0.215131582274707 0.214928897753694 0.215762293300273 0.214303397813107 0.211758912936294 0.211758912936294 0.225109818017334 0.213090865996096 0.226530245534921 4 4|0 +|/ 8376560 8378037 8377130.444 8376396 8378331 + gene protein_coding_gene FALSE TRUE AT4G14600.1 Identical to Bet1-like protein At4g14600 [Arabidopsis Thaliana] (GB:Q8VXX9;GB:O23316); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29060.1); similar to unknown [Striga asiatica] (GB:ABE66395.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727) 0.282419789184801 2.7291816792988 0.0197814387552670 1 2.20031591819316 7.30317469715549 0.282419789184801 0.106152194034002
AT2G45990_at 9.9812054623839 9.8614034133431 9.84316265941792 9.8909836671906 10.2209904517547 9.8727398433248 10.8019564452042 10.5443916083755 10.6697708882726 10.5611920307611 10.5078076713988 10.4225892465217 10.3042384524604 10.5053558365664 10.4401994874795 10.3550970958216 10.1607142510023 10.4927935203813 10.4808874254956 0.0749907660893493 0.0714010241734444 0.0779329646435805 0.0756383421924226 0.0714010241734444 0.0786495006311448 0.0725562514156918 0.0723969239776694 0.079544433465038 0.0736290054113574 0.073382509196623 0.0724922713479257 0.0729960084388883 0.072112846838628 0.0736092290243437 0.0714010241734444 0.0726312283260085 0.072538365035339 0.0740004031126871 2 2|0 +|/ 18926959 18928084 18927721.375 18926436 18928584 + gene protein_coding_gene FALSE TRUE AT2G45990.1|AT2G45990.2|AT2G45990.3|AT2G45990.4 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80178.1); contains domain no description (G3D.3.40.50.1000); contains domain HAD-like (SSF56784) -0.256143706605207 -2.72820925273751 0.0198156996240618 1 2.19879566000068 20.6117123072312 -0.256143706605207 0.0782118080816161
AT2G38960_at 4.46885117274571 4.62641610029063 4.08166395980739 4.29182360306035 3.52373770267254 3.88510800459767 3.55072831878828 3.81214802652970 3.90605706263172 4.36821594244227 3.42032094757353 3.75226439042226 3.287681951267 3.90679617404406 3.75154926378779 3.46346837098461 4.06663000134932 3.50616510778617 3.74821673379077 0.242351983850421 0.236915100969252 0.235990513839819 0.237925199469819 0.237173974917396 0.243538200090269 0.243076014117394 0.234338939189336 0.234986357813147 0.234284886131067 0.232796740737676 0.232593836343173 0.236963507529435 0.235012673856602 0.232593836343173 0.242448767222711 0.241014781284648 0.233923081979161 0.23331313179323 2 2 + 16274226 16274974 16274604.778 16272487 16275245 + gene protein_coding_gene FALSE TRUE AT2G38960.1|AT2G38960.2 AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) endoplasmic reticulum oxidoreductin Identical to Endoplasmic oxidoreductin-2 precursor (EC 1.8.4.-) (AERO2) [Arabidopsis Thaliana] (GB:Q7X9I4;GB:Q9ZV11); similar to AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) [Arabidopsis thaliana] (TAIR:AT1G72280.1); similar to Os03g0733800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051175.1); similar to putative endoplasmic reticulum oxidoreductin [Oryza sativa (japonica cultivar-group)] (GB:AAT78803.1); contains InterPro domain Endoplasmic reticulum oxidoreductin 1; (InterPro:IPR007266)|similar to AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) [Arabidopsis thaliana] (TAIR:AT1G72280.1); similar to putative endoplasmic reticulum oxidoreductin [Oryza sativa (japonica cultivar-group)] (GB:AAT78803.1); contains InterPro domain Endoplasmic reticulum oxidoreductin 1; (InterPro:IPR007266) -0.266044820386919 -2.72731140359818 0.0198473853256136 1 2.19739203841889 7.85598766382325 -0.266044820386919 0.0895752305250062
AT3G51050_at 8.31505426946749 8.35009905335963 7.91269504209298 8.16161814705275 8.687691566153 8.23360498509275 8.65450241267622 8.47616423068158 8.09370804906423 7.39254936660938 7.02593471934809 7.27615153101291 7.26585319532688 7.48061283991787 7.03844990055003 7.27806220763033 7.00198921595368 7.07542522330467 7.08093546281242 0.229808138057988 0.218767231136792 0.223172626971818 0.229703550446279 0.218767231136792 0.228518354856821 0.218767231136792 0.218767231136792 0.229312382339091 0.224497302172797 0.218767231136792 0.218767231136792 0.218767231136792 0.222536192570447 0.223254096241838 0.218814272324229 0.23421763274685 0.218767231136792 0.218767231136792 3 3 + 18968001 18968652 18968379.818 18964904 18968937 + gene protein_coding_gene FALSE TRUE AT3G51050.1 FG-GAP repeat-containing protein similar to Os02g0100700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045583.1); similar to hypothetical protein DDBDRAFT_0202478 [Dictyostelium discoideum AX4] (GB:XP_643541.1); contains InterPro domain FG-GAP; (InterPro:IPR013517) -0.27107016423991 -2.72684703179198 0.0198637930741786 1 2.19666609567622 15.7002824534683 -0.27107016423991 0.0949737458533706
AT2G43510_at 8.18468293102588 8.13068800666878 7.97404999909071 8.15920054711068 7.45072221162654 6.23911083807206 5.22939968616546 4.75634209412635 2.78198441293483 7.53573343227947 2.68897944047638 2.31722680932259 1.87159372147466 2.6730058235712 2.60879680159265 2.03698330529607 3.24233574192777 2.42594102837349 2.39042548886032 0.322678221607871 0.3173302907813 0.336046348818999 0.326464059993490 0.318671959839879 0.339897123891054 0.323013933169762 0.31712531275855 0.327610673783827 0.321008395985835 0.31712531275855 0.323989097729071 0.333399809280837 0.328237969868121 0.321251368235475 0.319626901222656 0.329546912912058 0.326701594643303 0.320676968321782 2 2|0 +|/ 18074289 18074672 18074536.5 18074249 18074879 + gene protein_coding_gene FALSE TRUE AT2G43510.1 ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1) Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Identical to Trypsin inhibitor ATTI-2 precursor (diDi 4T-1) (ATTp) [Arabidopsis Thaliana] (GB:Q42328;GB:O22865); similar to trypsin inhibitor, putative [Arabidopsis thaliana] (TAIR:AT2G43535.1); similar to rapeseed putative trypsin inhibitor 1 [Brassica napus] (GB:CAJ44305.1); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.436223612271072 -2.72636200032633 0.0198809451903794 1 2.19590786849826 10.3751023452504 -0.436223612271072 0.227550878621647
AT1G73990_at 7.85213176066227 7.60559492873707 7.45206117526035 7.52549958193768 7.60646574062376 7.05669397726604 8.2571491576688 8.10801718925365 7.76248042362966 8.18561902282265 7.90491767000765 7.9343387456474 7.84896826442515 7.9485683339688 7.91563409173348 8.47730277177786 7.62156545902645 8.11548769160127 8.03265491121304 0.162905525431831 0.144751178718722 0.160287515636612 0.148157030951938 0.14375802916752 0.174262997678579 0.156402437776537 0.147495659484715 0.158509865560128 0.148748479793540 0.146698235525470 0.148766757889425 0.152997485280644 0.155962575298789 0.154111922916082 0.151489369471178 0.155854347395856 0.147858553427969 0.150311170764602 1 1 + 27831578 27832440 27832152.545 27828094 27832587 + gene protein_coding_gene FALSE TRUE AT1G73990.1 SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase Encodes a putative protease SppA (SppA). similar to signal peptide peptidase SppA, 67K type [Solibacter usitatus Ellin6076] (GB:YP_829050.1); similar to Os02g0728100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047998.1); contains InterPro domain Peptidase S49, SppA; (InterPro:IPR004635); contains InterPro domain Peptidase S49, protease IV; (InterPro:IPR004634); contains InterPro domain Peptidase S49; (InterPro:IPR002142) -0.284140023836720 -2.72570310728725 0.0199042691386872 1 2.19487787190569 15.6651680211322 -0.284140023836720 0.108164417982151
AT1G16000_at 4.89872188364522 5.54756415622676 5.08331678627666 5.06974118866312 4.45808876597847 3.93628697394665 5.1277996237156 5.63207509966228 5.24129011984401 5.00419249748979 4.94995738974425 5.24339524391372 4.63621866315662 5.16430932652499 5.98086487250025 4.83943928724121 5.01051884147953 4.81586428200829 5.13262041759978 0.260286518892155 0.255479814059519 0.262515313681969 0.263524209607925 0.253715235960132 0.260192009672695 0.264294514280507 0.265532928960404 0.268254406152670 0.253817313678792 0.26229207792805 0.2546897300161 0.260692739751264 0.259953791826969 0.253715235960132 0.255980009544523 0.280434855649792 0.258276326133655 0.263827511651653 1 1 + 5494581 5495117 5494803.364 5494527 5495353 + gene protein_coding_gene FALSE TRUE AT1G16000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80890.1); similar to Os12g0556400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067003.1); similar to hypothetical protein LOC_Os12g36930 [Oryza sativa (japonica cultivar-group)] (GB:ABA99557.1) -0.355322559376497 -2.72519903585251 0.0199221309651777 1 2.19408991180887 10.0722519764138 -0.355322559376497 0.168473088846189
AT2G33180_at 7.08942921759442 7.09976704689295 6.00434594282954 6.01101613271545 6.1819361779556 5.77458566179166 7.27873831362598 7.54825787905536 6.76324558284372 6.79881712956752 6.89403315742425 8.48267211019545 6.831982925098 7.45306055506782 8.6145483939302 7.7472612773041 6.72000712522005 6.70307480254445 6.51498536593904 0.218847767416602 0.208960893535791 0.204478224091195 0.204478224091195 0.206952025883036 0.216952263699976 0.204478224091195 0.208368360316073 0.208669882733758 0.2128866041626 0.206362224687824 0.213695948660355 0.205361253768573 0.204478224091195 0.219802076737403 0.206725897532101 0.215379612881009 0.205061406131836 0.208141188978856 2 2|0 +|/ 14073641 14074358 14074074.111 14073540 14074544 + gene protein_coding_gene FALSE TRUE AT2G33180.1 similar to hypothetical protein [Triticum aestivum] (GB:CAJ19336.1); similar to Os09g0481800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063498.1) -0.261298225785583 -2.72507173577607 0.019926644376379 1 2.19389091960931 13.6850992479567 -0.261298225785583 0.0845539139385511
AT1G02140_at 9.8056406750341 9.87333269357776 9.86473328320652 10.0054798270634 9.85235932708454 9.72299523339751 9.82421554031143 10.2330536576336 9.5279275352804 9.31146002427419 9.98162323309387 9.921485695297 9.91760399657397 10.0134239107666 10.1219878304050 9.89301472192232 9.89556414498548 9.62621055014725 9.16786113518982 0.0918353609199414 0.0899311637476892 0.0980661923881446 0.0914166951753878 0.0907879310531098 0.099125340986612 0.0879653808192449 0.0925871621920219 0.097552169332019 0.0947036256542443 0.0907365031601523 0.0879653808192449 0.0912332780708307 0.0919081286434197 0.0881574967033886 0.0879653808192449 0.100163925238684 0.0918337998287268 0.0895219127549946 1 1|0 -|/ 403478 404365 404043.889 403190 404456 - gene protein_coding_gene FALSE TRUE AT1G02140.1 MEE63 (maternal effect embryo arrest 63) Identical to Protein mago nashi homolog [Arabidopsis Thaliana] (GB:O23676); similar to mago nashi [Taiwania cryptomerioides] (GB:ABB91896.1); contains InterPro domain Mago nashi protein; (InterPro:IPR004023) 0.256472985766454 2.72488799508443 0.0199331606758605 1 2.19360370244378 19.5262831923205 0.256472985766454 0.0789773165906711
AT2G27280_at 2.48073075725993 2.62271692311534 2.88832049602711 2.81267143635900 2.471365386111 2.91150595279485 2.35680843398083 2.66198980952713 2.60764166600382 2.41025014606579 3.15808646133983 2.82137735580755 2.99054325244707 2.74066820726236 2.86055880450512 2.51346373609524 2.88862412656987 2.95989536595999 2.66779385681546 0.1808405778507 0.177207043398258 0.179632015377009 0.179517899489719 0.179939908067236 0.186436924391654 0.182352798548277 0.178754233405130 0.192822604059073 0.178026570455035 0.181911039226859 0.181701787853239 0.185107067413493 0.180610623742439 0.177207043398258 0.181696687681159 0.180226306696080 0.182233435421701 0.185272573131726 2 0|2 /|- 11680935 11681225 11681068.4 11680904 11682691 - gene protein_coding_gene FALSE TRUE AT2G27280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27285.1); similar to Os04g0440000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052872.1); similar to OJ000114_01.13 [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL50553.1) 0.272580638819437 2.72456524390479 0.0199446120614394 1 2.19309919327397 5.36503734275193 0.272580638819437 0.0967779861326347
AT2G11270_at 2.40295342313533 2.54737399567376 2.52876656972002 2.77013490657961 2.01892289219114 2.70131301088501 2.18768705541330 1.83032943002155 2.34084072392810 2.45482310564051 2.90134211537576 2.518955800911 2.72755857987479 2.74078761364114 2.57439841328169 2.64536175557571 3.02745241788266 2.29509524073990 2.09744488955537 0.266303134619534 0.286688696465864 0.280647475912476 0.266303134619534 0.266303134619534 0.277749951804178 0.276737473206964 0.275152866186196 0.28024235776077 0.268729525024889 0.266303134619534 0.267529904177292 0.269476463756551 0.268107819723955 0.268293890642932 0.266303134619534 0.283429297279054 0.266303134619534 0.271326092557531 2 0|2 /|+ 4492106 4492366 4492208.333 4491802 4492390 + gene protein_coding_gene FALSE TRUE AT2G11270.1 citrate synthase-related similar to CSY5 (CITRATE SYNTHASE 5), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G60100.1); similar to citrate synthase [Nicotiana tabacum] (GB:CAA59008.1); contains InterPro domain Citrate synthase; (InterPro:IPR002020) 0.321932227284316 2.72379505923303 0.0199719650512421 1 2.19189530041315 4.86172110971996 0.321932227284316 0.141912919921101
AT1G48950_at 4.95760766875116 5.34498022479714 4.25032395605017 5.16005814597568 5.45042226304629 5.36092659126245 5.81133967408516 6.0272683983074 4.82624309015478 4.8266680840499 4.68521538259665 5.25516856234939 4.56725828405003 4.7147828325741 4.71108784118452 4.84486081982969 4.75644855174815 4.28161406689334 5.27692204286775 0.25721319039048 0.259150313128633 0.268009731205433 0.264418682972540 0.257042696670075 0.277491379827271 0.259687574313723 0.253348653991301 0.270299874437489 0.252901735072153 0.256124421765258 0.253253383383286 0.270688825589033 0.256960038834828 0.264482730302121 0.255761371942682 0.257546699052713 0.251607347818537 0.260606484607899 1 1 + 18112687 18113713 18113122.545 18110565 18113905 + gene protein_coding_gene FALSE TRUE AT1G48950.1 zinc ion binding similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17210.1); similar to Os01g0605600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043521.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52672.1); contains InterPro domain Zinc finger, C3HC-like; (InterPro:IPR012935) -0.364711391052905 -2.72363063253307 0.0199778094674516 1 2.19163828555389 10.1471986727898 -0.364711391052905 0.175828008048978
AT2G46060_at 5.80963878595662 5.5280358321445 5.10917152245176 5.37785522172748 5.53820038218225 5.0970981986888 5.8294308948144 5.94279926540148 5.57574553868756 4.91686319196988 4.86820657095972 4.83121040183115 5.36723040831272 5.47185303928547 5.25110843836859 4.96587801400591 4.8628776899166 4.99913519345306 4.92338651751966 0.180255296731452 0.181894877051953 0.190971131944602 0.194981106133446 0.185238597851656 0.205810161323797 0.182617916120990 0.181218993056110 0.181898633807019 0.190429641682103 0.185976468097716 0.180255296731452 0.190090520144733 0.186662024850271 0.191487860557549 0.185863727101864 0.187987787410206 0.182562416437280 0.192510099597995 2 2|0 -|/ 18948480 18949399 18949061.2 18948172 18952172 - gene protein_coding_gene FALSE TRUE AT2G46060.1|AT2G46060.2 transmembrane protein-related similar to Os10g0446200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064715.1); similar to transmembrane protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47721.2) -0.279186238262860 -2.72232000195044 0.0200244555943443 1 2.18958969586619 10.6369550390421 -0.279186238262860 0.103676163387457
AT2G01270_at 8.58507455157286 8.47504244042815 8.34894112433102 8.46248529134747 8.60580174428634 8.41744232465424 8.45828512026149 8.21951697979875 8.49304861779772 8.49459108474883 7.86911827497498 7.86004780151033 7.97460610239292 8.02153274004782 8.05539971288309 7.81163020835736 8.32424496633088 8.0352557354755 8.5144279036962 0.128270096188029 0.134638117566209 0.140823942317148 0.135354327630212 0.127662096786514 0.133893236601606 0.128683010540146 0.132406492379863 0.149843722312643 0.129953469978831 0.128477958875742 0.131668795377179 0.132633640082298 0.13216715422303 0.137549134991370 0.128094903722555 0.127400682192641 0.128581928262756 0.135436705662183 2 2 + 141384 141988 141780.091 139330 142559 + gene protein_coding_gene FALSE TRUE AT2G01270.1 ATQSOX2 (QUIESCIN-SULFHYDRYL OXIDASE 2); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. similar to ATQSOX1 (QUIESCIN-SULFHYDRYL OXIDASE 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G15020.2); similar to Thioredoxin domain 2; Erv1/Alr [Medicago truncatula] (GB:ABE92220.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Erv1/Alr; (InterPro:IPR006863) -0.241260955597427 -2.72137484121469 0.0200581615820722 1 2.18811241473610 16.6939080194988 -0.241260955597427 0.0593173327615322
AT1G55480_at 10.0476986801821 10.1563690316066 9.99027288011276 9.96585679745724 9.81591948892732 9.63141586709976 11.2496925901311 11.0955382868281 10.5554050402868 10.9516869231758 11.3092769461168 11.3393812636395 10.8610943073981 11.0293718580564 11.1179223509719 11.3709615251392 10.8968277321630 10.8461507801054 10.8213654649202 0.112679875396744 0.111628788752744 0.116661406551202 0.114657801797765 0.108858788688845 0.121734739572687 0.111410670174832 0.108579212129295 0.128811725266601 0.113620431136759 0.110148866458460 0.111821174694618 0.110024671161574 0.115198391125342 0.120434117216061 0.113296968213897 0.115885954524992 0.113786464276723 0.107705127624400 1 1|0 +|/ 20718002 20718979 20718642.889 20717350 20719213 + gene protein_coding_gene FALSE TRUE AT1G55480.1 binding / protein binding similar to rubredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G17170.2); similar to PDZ/DHR/GLGF; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE87465.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.233118759733250 -2.72117993751455 0.0200651191770008 1 2.18780778742766 21.1803583635813 -0.233118759733250 0.0458547596627199
AT2G43210_at 6.5202362639347 7.13562071830116 6.63316072628806 6.80059178680004 8.11452942105524 7.03424553722395 6.30418865282721 5.86663804373607 6.39474851896617 5.93673134900174 6.42586702035179 6.51553119980128 6.54596743136134 6.75615577360411 6.12075706589904 6.59284795773024 6.29524749733323 6.52339999323314 6.51903357116575 0.219739460175509 0.220835059315303 0.231831776982440 0.217870961101869 0.223498799077765 0.229954119534611 0.223380560875672 0.233582785609163 0.250074095181916 0.221154659458328 0.216572440798495 0.215001475419676 0.215001475419676 0.226388766502813 0.240103548348596 0.219435261829427 0.221441844405043 0.224661840660404 0.216682958297325 2 2 + 17969824 17970576 17970253.636 17967777 17970804 + gene protein_coding_gene FALSE TRUE AT2G43210.1|AT2G43210.2 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to UBX domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96153.1); similar to Os11g0293900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067713.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.438714105422544 2.72082371718619 0.0200778415860034 1 2.18725103359048 13.1788895048335 0.438714105422544 0.229921535566572
AT3G55970_at 1.23816055241436 1.50269932666579 2.07209809913710 2.45431986579132 0.961123738129198 0.97861009567757 1.04765985669846 1.19126991001902 1.48451502101037 2.66325678637004 0.825404644553655 0.895015504285846 0.916700278989125 1.09378840557218 1.1782654240608 0.926238538189365 0.876702400157817 1.30635774760772 1.53660147231866 0.233959777947796 0.237481131923664 0.246458044040367 0.245549836031715 0.237768282020852 0.238168986179809 0.245222252952327 0.235979834216501 0.23998116690477 0.262351303581969 0.241207517635156 0.237627046702789 0.235186677914302 0.236465048065773 0.233561995946307 0.235557774093627 0.236484203012635 0.234196133141622 0.245227046294699 3 3 - 20777949 20779184 20778511.909 20777718 20780303 - gene protein_coding_gene FALSE TRUE AT3G55970.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G11180.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G05600.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE94015.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.260445718535786 -2.71898676035408 0.0201435758438191 1 2.18438007734613 2.87929278614664 -0.260445718535786 0.0842482754239044
AT2G05350_at 1.58999644803461 1.86571171163324 1.66867483968477 1.81361242785480 1.16159305264629 1.30586304677215 1.14896223923806 1.56839670307472 2.21704952621990 1.68935175744732 0.983094845057087 1.45398616068063 1.65995377080325 1.51580893748232 1.02315508267845 1.04373396449391 1.65673878251988 1.86572437400295 1.74188907014186 0.222363080837900 0.233054308171925 0.229426120219925 0.229624935207249 0.228384231560543 0.234323877811759 0.224332263013681 0.229206708469983 0.234488597094662 0.234082339499869 0.232799247981280 0.227322062004519 0.237543244789815 0.227194863232599 0.232023113424384 0.225851150906849 0.240169752407882 0.231912919345714 0.226959144306043 2 2 + 1952919 1954693 1953745.364 1949611 1954737 + gene protein_coding_gene FALSE TRUE AT2G05350.1 unknown protein -0.269159947655266 -2.718899830904 0.020146691848554 1 2.18424422107818 3.15687027910958 -0.269159947655266 0.0937957733340206
AT1G66140_at 4.87769720856119 5.78807958803502 5.510502672022 5.6307308683658 6.09463669584141 6.04239458527428 5.67359454278903 6.12416865852614 4.16000297622316 4.68539650254413 4.55615191485252 4.93963464678151 5.63875776291637 5.6420173232187 5.29673898752027 5.87906330590394 5.27113265382338 4.07795417480543 5.05828498729452 0.245271095202553 0.236531112011846 0.235393766596841 0.237057883368189 0.239440661242791 0.247991860769338 0.240750863011106 0.25527586111443 0.261858476650845 0.242221448550551 0.24524989841173 0.233876885014079 0.240635773758986 0.249210980110962 0.238026940219017 0.233383630429784 0.249839923921945 0.261657891440833 0.237092283922030 1 1 - 24623735 24624287 24624046.273 24623500 24625667 - gene protein_coding_gene FALSE TRUE AT1G66140.1 ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 4 (ZFP4) [Arabidopsis Thaliana] (GB:Q39263;GB:Q9C8D2); similar to ZFP7 (ZINC FINGER PROTEIN 7), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G24625.1); similar to zinc finger protein (GB:AAA87300.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.365900531719263 2.71861845277597 0.0201567811918110 1 2.18380447677055 10.6163470198844 0.365900531719263 0.177243560585641
AT1G11440_at 6.28315656758144 6.83673784490477 5.28325149596541 5.38314130070835 6.28232821297282 5.59465783524321 6.48096527260057 6.62794415814283 5.48270947073141 6.06991383600172 6.26706182008069 6.85341437460139 5.87169059777845 6.41918415606267 6.1310648521627 6.64021649382707 5.53042613815736 5.08086254888014 6.01135144230318 0.275907440265247 0.264874068352527 0.272652324042804 0.274559558279666 0.262867266331678 0.282908848446896 0.269707841729763 0.263889333396464 0.262280819324662 0.268832158631447 0.263553308538943 0.258884498249836 0.258884498249836 0.264048691943861 0.264450629669108 0.258884498249836 0.285831998860555 0.28945339787992 0.267925306910634 1 1 + 3849939 3850473 3850246.909 3849360 3850662 + gene protein_coding_gene FALSE TRUE AT1G11440.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT3G29075.1); similar to Os06g0232000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057224.1); similar to Stress protein DDR48 , related [Medicago truncatula] (GB:ABE86766.1) -0.338387188284959 -2.71854804201220 0.0201593066876162 1 2.18369443787712 12.0734720222012 -0.338387188284959 0.155837963107837
AT1G79410_at 5.30741966178945 5.59249586661268 5.3739527571436 5.60225383075373 5.79520890971682 6.19870364969562 6.42529912860485 6.3289367138055 4.23946897905204 4.90363666197085 4.84701881787879 5.18788986116519 5.27772918328725 5.25004376699788 4.30106570527896 6.02725747982326 4.81102000221302 4.59034084579404 3.82840502271889 0.221842964736291 0.221077022767951 0.222992425904791 0.220244717814842 0.216223663636613 0.221658782693021 0.218578218381379 0.221024630848886 0.227422471155003 0.221857029770221 0.220087383074432 0.220083629446616 0.216223663636613 0.216345004420841 0.216223663636613 0.217620293678625 0.221516501259590 0.219774793445392 0.220683749768267 1 1 - 29872938 29873444 29873174.727 29872773 29874526 - gene protein_coding_gene FALSE TRUE AT1G79410.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G16370.1); similar to Os07g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059989.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.270850382007598 2.71814301075066 0.0201738404699311 1 2.18306145493273 10.5082251126246 0.270850382007598 0.095648291605963
AT4G05020_at 7.37745856843398 7.41328213580403 8.30708829943503 8.4712628103402 6.37859097113158 6.49423711715316 6.51489338119648 7.26931951856573 5.22927274772309 4.72342596419759 4.79913780036761 4.65080421843259 5.24696650699559 5.17917596255483 4.98322565910468 6.04214149513255 5.7388376283972 4.96453846670638 4.57615384842692 0.226215052071305 0.217554129644357 0.220281602597813 0.229082538284823 0.218464182877242 0.219625850056535 0.214555092404899 0.221288436963062 0.232918772801424 0.221560932200194 0.212357057613434 0.220840037426237 0.219589247476958 0.217887568674550 0.213461866212605 0.216918895293326 0.223827695520937 0.223852079637874 0.221139337641696 4 4|0 +|/ 2574876 2576147 2575404.25 2572619 2576593 + gene protein_coding_gene FALSE TRUE AT4G05020.1 NDB2 (NAD(P)H DEHYDROGENASE B2); disulfide oxidoreductase similar to NDB1 (NAD(P)H DEHYDROGENASE B1), NADH dehydrogenase/ disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G28220.1); similar to NDB4 (NAD(P)H DEHYDROGENASE B4), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G20800.1); similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G21490.1); similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand [Medicago truncatula] (GB:ABD32606.1); similar to external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum] (GB:CAB52797.1); similar to Os06g0684000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058394.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.313354506138583 2.71813684383482 0.0201740618385002 1 2.18305181734629 12.3000437605878 0.313354506138583 0.135245228632185
AT1G75930_at 1.43304080898711 1.97506943883261 1.54567853278623 1.87870298926701 1.41607066754049 1.17659844215787 1.61927696991774 1.62701968390219 2.1452005502966 2.33827576409006 2.01108030883321 1.75966608960534 1.62122959807070 1.60905040161522 1.40322367327869 1.69212615615641 2.02474840757125 2.20455806540324 2.17098228429049 0.166343060576274 0.167550983559473 0.170688447003243 0.165583595852361 0.165583595852361 0.165583595852361 0.168582660867679 0.166531133569595 0.178484305624516 0.178971451622502 0.165583595852361 0.173149835322111 0.166961657004567 0.174863712067130 0.168206511601910 0.176673431465752 0.169230984372285 0.171933380886249 0.174819492607465 1 1|0 +|/ 28512511 28513344 28512852.8 28511733 28513518 + gene protein_coding_gene FALSE TRUE AT1G75930.1 EXL6 (extracellular lipase 6); acyltransferase/ carboxylic ester hydrolase/ lipase member of Lipase proteins similar to family II extracellular lipase 5 (EXL5) [Arabidopsis thaliana] (TAIR:AT1G75920.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) -0.293390798065483 -2.71780616642277 0.0201859354208452 1 2.1825350415419 3.58836379357014 -0.293390798065483 0.117639910454228
AT1G68170_at 2.02972434529649 1.71011732449417 1.91482542754542 1.66458615531972 1.79810668544503 1.54135791225395 2.13165953507992 1.81483859898117 2.12288944377253 2.43170089906446 1.98546024986544 1.69848960626183 2.26841446551988 1.92208404333846 1.56776939859270 1.66535373215982 2.3384492184774 2.34718289994258 2.43949660330710 0.178860808487006 0.176449905011833 0.174470172614343 0.178603106802429 0.173676155981968 0.174916118129893 0.176364398657427 0.184592708823096 0.173120722156281 0.180077780060275 0.179194392795802 0.182227749059783 0.173916349320208 0.180852866647336 0.176532556805432 0.174450469030848 0.177340491847779 0.172940201234078 0.179886258330764 1 1 + 25556991 25557875 25557359 25555585 25557921 + gene protein_coding_gene FALSE TRUE AT1G68170.1 nodulin MtN21 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25270.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABD28596.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.274538884716756 -2.71689979362170 0.0202185160123538 1 2.18111861240001 3.97840838162755 -0.274538884716756 0.0995724383085376
AT1G78610_at 3.19512711538238 3.62503739491491 3.48495179690264 3.10457981006149 4.14030106471538 3.92135570758922 4.61916619676658 4.51048413291854 3.92733420092551 3.88964669162748 5.28120715651233 5.09324945971031 5.12888854175579 4.98991398233981 4.97323236182432 4.02597630322184 4.18151699175230 4.55940413156996 3.8487594593129 0.238128795551041 0.229183099966165 0.249810211965176 0.239712306138179 0.240732043198978 0.233442364180762 0.245017243433494 0.229183099966165 0.235582376206992 0.238331802593496 0.238522633513792 0.237872037377625 0.229414507967719 0.229183099966165 0.241688466471457 0.229183099966165 0.23515060724471 0.229183099966165 0.231871579533443 1 1 - 29574119 29574840 29574459.545 29573923 29577019 - gene protein_coding_gene FALSE TRUE AT1G78610.1 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G17000.1); similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G53470.1); similar to mechanosensitive ion channel [Brachypodium sylvaticum] (GB:CAJ26378.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1); similar to Os02g0668000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047683.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain MscS Mechanosensitive ion channel; (InterPro:IPR006685) 0.282968441809391 2.71640292777223 0.0202363985770137 1 2.18034215763803 8.15900226909362 0.282968441809391 0.107969268970676
AT2G36160_at 10.0398051984641 10.4889117279937 9.84730589859717 9.85861858473112 10.0263351605675 10.1502097993784 10.0149298707422 10.4517650414927 9.96609866123382 9.73440732406383 9.80306736592295 9.8675605894737 9.63570785638794 9.68053868556507 10.0135982933661 9.40900802456747 8.78039524123433 9.36637541239755 9.88715015836644 0.117320361930993 0.113417515684915 0.122237513515066 0.123431651988446 0.115312439675693 0.118696780344437 0.112299311964519 0.111965824133685 0.125679740015720 0.115549186203997 0.113569442963766 0.111965824133685 0.121470109833219 0.116649697678087 0.113187759137343 0.114775240387693 0.138428710041795 0.121121799355643 0.111965824133685 2 2|0 +|/ 15177370 15177978 15177650 15176897 15178432 + gene protein_coding_gene FALSE TRUE AT2G36160.1 40S ribosomal protein S14 (RPS14A) Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14B) [Arabidopsis thaliana] (TAIR:AT3G11510.1); similar to cytoplasmic ribosomal protein S14 [Brassica napus] (GB:AAO41731.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) -0.285628106564135 -2.71623547510602 0.0202424288598013 1 2.18008048165374 19.8257769009971 -0.285628106564135 0.110537715792012
AT2G46330_at 10.0790996305299 10.5976440349890 10.246086763602 10.2861594485501 10.4081616567723 10.1522770251850 9.383010010967 9.72501548270539 11.6013205642133 10.3673658815771 12.2866932824737 11.7938453335406 11.4095988284561 11.7726877045576 11.4779171732974 10.9614258336465 9.42448098299574 11.0980881615941 11.0948618907957 0.0961885364010192 0.08625719935373 0.0896821910011985 0.0922318969788575 0.0865705508076668 0.089746982698458 0.0910127041134326 0.091350193594935 0.102183337735328 0.0889470403506693 0.0883090179414172 0.0883415839630279 0.0884566525997805 0.0888604097854548 0.0897704144181178 0.08625719935373 0.115939271054493 0.0935922764389427 0.0868511981004304 2 2 - 19025830 19026134 19025998.364 19025581 19026328 - gene protein_coding_gene FALSE TRUE AT2G46330.1|AT2G46330.2 AGP16 (ARABINOGALACTAN PROTEIN 16) Encodes arabinogalactan protein (AGP16). Identical to Arabinogalactan peptide 16 precursor (AG-peptide 16) (AGP16) [Arabidopsis Thaliana] (GB:O82337); similar to AGP20 (ARABINOGALACTAN PROTEIN 20) [Arabidopsis thaliana] (TAIR:AT3G61640.1); similar to unknown [Capsicum annuum] (GB:AAM12785.1); similar to Os05g0217000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054936.1); similar to Os01g0657000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043758.1); contains InterPro domain Protein of unknown function DUF1070; (InterPro:IPR009424)|Identical to Arabinogalactan peptide 16 precursor (AG-peptide 16) (AGP16) [Arabidopsis Thaliana] (GB:O82337); similar to AGP20 (ARABINOGALACTAN PROTEIN 20) [Arabidopsis thaliana] (TAIR:AT3G61640.1); contains InterPro domain Protein of unknown function DUF1070; (InterPro:IPR009424) 0.291944158718827 2.71619399870565 0.0202439227781275 1 2.1800156672967 21.2593192273787 0.291944158718827 0.116467049601314
AT1G48390_at 0.731285164408746 0.863176481037031 1.31369701891492 1.14217002512086 1.44928643419516 1.08605950619186 0.87926893577821 1.24023914727405 1.01188712588993 1.14859916444115 1.46149976294856 1.3329164296639 1.33681117343868 0.972291295355955 1.69952860213517 1.51041343342998 1.21088545952027 1.62825274229381 1.35262587951757 0.158537866291863 0.166206551669149 0.160800645462219 0.166866564368265 0.163649026232304 0.160712217754375 0.169299964072669 0.163931790531435 0.173891398945829 0.169175703851106 0.161639706095895 0.163106896639105 0.177009280792747 0.167653074433957 0.158669456678707 0.160765562190537 0.166273454129889 0.164854499123567 0.162744634270148 1 1|0 -|/ 17883120 17883905 17883493.1 17883116 17884571 - gene protein_coding_gene FALSE TRUE AT1G48390.1 syntaxin-related family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G48400.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.271174143189965 2.71602719206216 0.0202499320116266 1 2.17975500281 2.37070396526403 0.271174143189965 0.096205027695363
AT3G55920_at 7.03517666450807 6.4617194307941 6.03869191039983 5.32740859057394 6.42023744536934 5.67379875362434 6.83580820346981 6.34694004232212 6.54274530774978 6.4366604262198 6.5745629361741 6.95617036796593 5.96283753143726 6.53761870077487 6.9709532746587 6.11911753700276 5.99702084093202 6.40539526818071 6.47916705227648 0.253461124118572 0.251706804373256 0.253604737748429 0.265315562045506 0.263118965283101 0.257305069531459 0.258050443424514 0.251706804373256 0.272901204676229 0.259594599285704 0.257081067458329 0.268827162856007 0.251706804373256 0.259617891402339 0.252932826053068 0.255569563027735 0.258498141607810 0.257867930396720 0.257948971607672 3 3|0 -|/ 20754573 20755824 20755047.667 20754422 20756053 - gene protein_coding_gene FALSE TRUE AT3G55920.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to CYP5 (cyclophilin 5), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G29960.1); similar to putative cyclophilin [Lycopersicon esculentum] (GB:AAW22880.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.425304140944774 -2.71598736524786 0.0202513670403962 1 2.17969276669596 12.7307978730774 -0.425304140944774 0.221005099476966
AT4G12000_at 5.02396211450374 5.34520775936710 6.08898615411955 5.70026865360435 5.15704091047312 4.99888151612325 7.2530224356848 7.19067525686554 4.71197358715393 5.44802741022703 5.20135476612605 4.80033480861446 5.13624450537457 5.23327571078823 5.08980623226878 5.82769023886177 5.96992581501759 4.78627496463838 5.05791902083058 0.246250110497974 0.236330093210829 0.245337160950603 0.245776810638791 0.241849114312691 0.251861868951551 0.247795200024102 0.238578991682777 0.257298646403503 0.237900678979434 0.243278516906142 0.236477344569730 0.243837342588881 0.244786398023159 0.245222331634449 0.235136887260754 0.235622020558286 0.237324772472625 0.240979803250692 4 4 - 7193637 7194265 7194036.545 7193264 7195146 - gene protein_coding_gene FALSE TRUE AT4G12000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22850.1); similar to At1g12450-related [Medicago truncatula] (GB:ABE81486.1); contains domain UNCHARACTERIZED (PTHR12677) -0.266974604442259 -2.71296931053323 0.0203604071208657 1 2.17497680949512 11.0088822932336 -0.266974604442259 0.0920939663808175
AT3G02340_at 7.51760652503753 7.92643274412242 7.6799918929872 7.85949403588577 7.95787025583079 8.10795410063099 7.25907936087839 7.40036112114678 7.13666379170524 6.85162529789417 7.17832956651322 7.20799024413942 7.08988395962672 7.48346786619644 6.77892788164486 7.31072178308705 7.2755333140234 7.00664019401407 7.074157519386 0.181000254460939 0.183655347331518 0.177375608030483 0.180605792471708 0.188420772299638 0.190262094921596 0.177243531610718 0.189064194215783 0.190625502963674 0.193739315386496 0.179727911014216 0.178852874447130 0.18090098542076 0.181198121020699 0.182127482635990 0.177840642105864 0.177243531610718 0.181555813858331 0.192281389299079 3 3 + 477752 478238 478014.091 477010 478449 + gene protein_coding_gene FALSE TRUE AT3G02340.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15820.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96854.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.26053947418229 2.71209908632013 0.0203919558437403 1 2.17361710976618 14.8072249483070 0.26053947418229 0.0851044749968836
AT3G60620_at 5.84463223802823 5.53398435663356 4.52813330302947 5.14659088450114 5.73585318544907 4.88893414757427 6.35487381669046 6.21234822307045 6.09612094477553 5.54205260378725 5.90172939473307 6.24939900003782 5.62316518947777 5.87035457278003 6.41268259221166 6.36963370505733 5.17108910310168 6.02510247112244 5.78414729999149 0.183712424710744 0.179184148412028 0.201539659341661 0.191164379306751 0.176536833039456 0.180265274266852 0.196243335532924 0.178463385747810 0.192107706282938 0.176536833039456 0.179878488353307 0.176754021272470 0.180503760233685 0.177414604828515 0.181981456837018 0.181445859796865 0.184821363593868 0.179967582690015 0.18027641761843 3 3|0 +|/ 22418366 22419182 22418753 22417381 22419572 + gene protein_coding_gene FALSE TRUE AT3G60620.1 phosphatidate cytidylyltransferase family protein similar to phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G45150.1); similar to putative phosphatidate cytidylyltransferase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08021.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) -0.383063778876693 -2.71141366781538 0.0204168388762392 1 2.17254619421621 11.4108361625804 -0.383063778876693 0.190876806435407
AT3G19570_at 2.39362472796046 2.93172707324784 2.41953628890907 2.30473369430402 2.51196251183082 2.51732140707474 3.26861013103932 3.05949176068108 2.75775040963298 2.7460880174904 3.16252105262748 3.05194369389472 2.65471201154369 2.72291587606034 3.75207785389392 2.78724597865483 2.00455275386635 3.00496822771402 3.40660557429739 0.196209346576941 0.199726238893332 0.202189581097267 0.198770908613467 0.202724751063961 0.201545953503719 0.196326403715071 0.197753646377118 0.202760955859297 0.203470964147590 0.208056387410719 0.195877779266839 0.199021233741961 0.198971112086182 0.197640238931805 0.196739638117258 0.199805730599773 0.199083237164421 0.204907620840564 3 3 + 6798983 6800681 6799763.091 6797491 6801741 + gene protein_coding_gene FALSE TRUE AT3G19570.1|AT3G19570.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49890.1); similar to Protein of unknown function DUF566 [Medicago truncatula] (GB:ABE79541.1); contains InterPro domain Protein of unknown function DUF566; (InterPro:IPR007573) -0.276252883572091 -2.71140218551521 0.0204172559796410 1 2.17252825420519 5.60725854013367 -0.276252883572091 0.101866299137396
AT2G23840_at 9.69212586175625 9.77241875401644 10.3113312339290 10.0996850077044 10.5810277509123 9.9426487614095 10.5336156824858 10.3074366220012 9.56199234459299 9.6217822278098 9.77493948540353 9.5373298533237 10.1469859298068 10.1222511394594 9.42326602284554 10.1887540314509 10.0907130347011 9.97368131057678 9.21446152549522 0.126634299410709 0.123757222354095 0.128348943903388 0.131005407014129 0.122511622035913 0.135432736022701 0.130736226946719 0.123194579426051 0.134742288715133 0.131842527435663 0.128128079577681 0.123760797810823 0.124653916914524 0.131740697039057 0.132045423793673 0.129018622676693 0.125276756327866 0.130388172846372 0.136939172046233 2 2|0 -|/ 10161821 10162656 10162381.889 10160877 10162727 - gene protein_coding_gene FALSE TRUE AT2G23840.1 HNH endonuclease domain-containing protein similar to Os07g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058990.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL50123.1); contains InterPro domain HNH endonuclease; (InterPro:IPR002711); contains InterPro domain HNH nuclease; (InterPro:IPR003615) 0.29921768003526 2.71122052905622 0.0204238559165216 1 2.17224443413551 19.8416956093995 0.29921768003526 0.123576756001122
AT3G60330_at 1.73518620463982 2.08430561425198 1.58928757827515 1.69408045110368 1.42324284422175 1.89715175987652 1.66183940417513 2.04293429295216 1.93175804571160 2.31301707472001 1.73275026444176 1.48344923042379 2.06757126053852 1.58154306386342 1.80821968615341 1.50947585076742 1.39261653188333 1.79785307420658 1.86911876334315 0.185298759290954 0.179091256704326 0.184213305797009 0.184893674852773 0.184923764706927 0.182514033127615 0.179347587119478 0.192263493826099 0.186697798456697 0.185133655538025 0.182628426701863 0.183248799662810 0.183243141327341 0.186362319018748 0.184239527303654 0.180156114819666 0.17978922082985 0.183606878959773 0.187281828728768 3 3|0 +|/ 22313628 22314158 22313839.556 22309738 22314484 + gene protein_coding_gene FALSE TRUE AT3G60330.1 AHA7 (ARABIDOPSIS H(+)-ATPASE 7); hydrogen-exporting ATPase, phosphorylative mechanism Identical to ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7) (AHA7) [Arabidopsis Thaliana] (GB:Q9LY32); similar to AHA11 (ARABIDOPSIS H(+)-ATPASE 11), ATPase [Arabidopsis thaliana] (TAIR:AT5G62670.1); similar to AHA4 (Arabidopsis H(+)-ATPase 4), ATPase [Arabidopsis thaliana] (TAIR:AT3G47950.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to plasma membrane H+-ATPase isoform LHA2 [Lycopersicon esculentum] (GB:AAD55399.1); similar to Plasma membrane ATPase 1 (Proton pump 1) (GB:P22180); similar to Plasma membrane ATPase 1 (Proton pump 1) (GB:Q08435); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.298202739137818 -2.71090500423974 0.020435324590634 1 2.17175146266718 3.62082826779187 -0.298202739137818 0.122696718684429
AT3G50550_at 6.50565233951292 6.5919695692058 7.04977429767737 6.8166838937306 6.60492064963145 6.03347285387372 6.49760293567764 6.4165915011562 5.1095570321835 5.8324143939792 6.27357865774897 5.9458247722922 5.59852823109804 6.72562340803553 5.55597009145169 5.55175931599417 6.26020699473127 5.19950567837139 5.39553251380311 0.228947681027748 0.225834164574047 0.226041828009791 0.227012786494344 0.232439577738629 0.23543642077466 0.227770966094697 0.230923012809894 0.233526006711514 0.240526838529049 0.230736747294206 0.229038577641259 0.228453539487638 0.225834164574047 0.235578361100834 0.228370245527006 0.230710010261234 0.229005692549270 0.228157815170773 3 3|0 +|/ 18770483 18770798 18770664 18770444 18771489 + gene protein_coding_gene FALSE TRUE AT3G50550.1|AT3G50550.2 |unknown protein similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to hypothetical protein 244.t00012 [Entamoeba histolytica HM-1:IMSS] (GB:XP_650128.1)| 0.283149417200145 2.71039324939069 0.0204539394196017 1 2.17095191645916 12.2319381502436 0.283149417200145 0.108749020805761
AT2G41060_at 5.30121569669598 5.11972302124901 5.64241370588247 5.2509387674706 5.45551538742144 5.38471246899126 5.02574905799352 5.13381451653578 4.92698972637863 4.85084958693061 5.04333505695254 4.85813176192551 5.34687454434981 5.01729838176287 5.001787316619 5.22101896709298 5.56479884111283 5.18209464311131 5.02479648228031 0.192232955384411 0.199409433531508 0.196857303045577 0.187878180201070 0.205302897195303 0.202317609873549 0.185004468800935 0.193114022746368 0.187280928275468 0.197346920120499 0.182752802980872 0.189117516154488 0.193748064660883 0.182624747519443 0.189183063940592 0.18516908838378 0.200159687794113 0.183802927468971 0.192567025032070 2 2 + 17135018 17135534 17135317.182 17134067 17136636 + gene protein_coding_gene FALSE TRUE AT2G41060.1|AT2G41060.2 RNA recognition motif (RRM)-containing protein similar to UBA2A, AU-specific RNA binding / RNA binding [Arabidopsis thaliana] (TAIR:AT3G56860.2); similar to RNA-binding re (GB:ABD28657.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.25423750828777 2.71023276108162 0.0204597805697672 1 2.17070117879100 10.3335750132695 0.25423750828777 0.0779482880662954
AT1G23850_at 2.4828144157144 2.91423830447498 2.69372919309375 2.84546926767848 2.52807191880226 2.65157158381961 1.85838280273818 1.89454418816773 1.29341035744111 2.12789785741140 1.56484901959110 1.58921137666402 1.86804087059955 2.15587948349497 1.80049003010364 1.98926568381326 2.13252734346753 2.23126412761065 1.95789730638362 0.227513030671765 0.223101903601069 0.232373912526528 0.219610317009672 0.229582864356317 0.225602064101955 0.227003865624791 0.226301087009616 0.219754488971945 0.225781818400616 0.224257712028658 0.219203616709312 0.22608887776961 0.221678620538021 0.225769055605642 0.217596743700192 0.229694156345967 0.231557664931943 0.219746612205859 1 1 - 8426084 8426515 8426298.091 8425728 8427224 - gene protein_coding_gene FALSE TRUE AT1G23850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23840.1) 0.257794023957042 2.70972390826878 0.0204783117867698 1 2.16990618643187 4.33835745880957 0.257794023957042 0.0822167090596872
AT2G32440_at 6.52523390126657 6.2424238072151 5.45570112826944 4.87453234309934 6.76757492526711 5.78405824913286 6.84283470521713 6.3099466634595 5.56758673961533 6.78896696113111 6.18747967509508 6.3888030641224 6.13071019227102 6.25685809715694 6.07597072006292 6.37911811643751 6.26599280829732 5.82341450449925 6.49771360549577 0.220091239407811 0.224227743814888 0.221478208330053 0.221567881522341 0.220091239407811 0.225929641968116 0.220091239407811 0.224484406629065 0.224967542897155 0.220091239407811 0.220091239407811 0.224504332102039 0.224939311344732 0.223641394437892 0.229294967182066 0.220091239407811 0.228884594964624 0.227115763778552 0.246087051169501 2 2|0 +|/ 13783849 13784792 13784422.7 13782656 13785079 + gene protein_coding_gene FALSE TRUE AT2G32440.1 KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G05160.1); similar to ent-kaurenoic acid oxidase [Cucurbita maxima] (GB:AAG41777.1); similar to ent-kaurenoic acid oxidase [Pisum sativum] (GB:AAO23064.1); similar to ent-kaurenoic acid oxidase [Pisum sativum] (GB:AAO23063.1); contains InterPro domain B-class P450; (InterPro:IPR002397); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.427927739675993 -2.7096807820482 0.0204798831077144 1 2.16983881004595 12.3369377983610 -0.427927739675993 0.223569843495512
AT4G11000_at 4.00914772685763 4.10033135796927 4.32666793427079 3.95628355819305 3.04506621717854 3.18424488410725 1.61632649654408 2.01959765430064 4.21280377226546 2.57011293123586 3.42135770998892 3.47816624568962 2.68693728071395 3.73221807577643 2.47085569410055 2.50564978488036 2.77798370422359 3.38408121183868 2.82425479455648 0.223945672322456 0.227874180002144 0.226357283882823 0.229506570576665 0.226350271735395 0.226748410645859 0.235964072370885 0.228268724855691 0.226030388023213 0.226089595349054 0.225262365319083 0.222668609564191 0.235389933652752 0.224727625848453 0.223686543615069 0.223332899115552 0.230185916913361 0.222668609564191 0.224140128999463 4 4 + 6731865 6732431 6732163.455 6731016 6732460 + gene protein_coding_gene FALSE TRUE AT4G11000.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G10720.1); similar to Ankyrin [Medicago truncatula] (GB:ABE88815.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.273240276784208 2.70926237203805 0.0204951342589311 1 2.16918513088421 6.41198158505471 0.273240276784208 0.0990346601161975
AT4G19600_at 7.07235563387377 7.2686469088071 6.92935275564867 7.25363833409837 7.09329977812492 6.87178912515571 6.52857741603735 6.4070947961894 5.89838387244343 5.93664534518373 6.05212803890598 6.39079844253891 6.66616241408064 6.3404887718505 6.34854196134798 6.60729213246169 6.0579131865643 6.09974507171744 6.25060933490905 0.199226875307178 0.202548330237637 0.203083123650101 0.202702993499879 0.203367383312041 0.209748463269515 0.201928483684982 0.194551877424717 0.204334367822392 0.196159701875489 0.19627485711426 0.196147940816331 0.203920675509060 0.206361540437088 0.192271038660517 0.193088244705534 0.192271038660517 0.194997195793233 0.206766346226263 4 4 + 10675960 10676511 10676165.909 10672775 10676745 + gene protein_coding_gene FALSE TRUE AT4G19600.1 cyclin family protein similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to Os12g0485400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066781.1); similar to Cyclin, N-terminal domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92940.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin, T/K; (InterPro:IPR012113); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.254844438892356 2.70886350188917 0.0205096836765247 1 2.16856198822546 13.102559311798 0.254844438892356 0.0788332656534552
AT2G42890_at 8.82720783557254 8.77218742564716 9.10221616726824 9.09142502150008 9.42731022942879 9.17000973278441 7.77778894717075 8.10411889181042 8.27573503438414 8.03186380500469 7.612560758968 7.19045163695987 8.30447369896592 7.92990691725938 7.01183656861953 8.38668949693862 8.07494173239394 8.10830229682333 8.15820183852679 0.166999746516080 0.159337577962060 0.165754460576610 0.165535300055210 0.165130266204632 0.159404410461532 0.164549295762723 0.166564705819641 0.156679328019055 0.167112730835465 0.156466631466796 0.163566244365731 0.162552133587992 0.167492299335018 0.179274993060409 0.154063504926608 0.176602208441286 0.155873375128457 0.161259049450968 2 2|0 +|/ 17860476 17861257 17860870.333 17856896 17861609 + gene protein_coding_gene FALSE TRUE AT2G42890.1|AT2G42890.2|AT2G42890.3 AML2; RNA binding|AML2 A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. similar to AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G29400.2); similar to AML1 [Medicago truncatula] (GB:AAT38998.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.249771504211349 2.70884603046512 0.0205103212086553 1 2.16853469336539 16.7753641719001 0.249771504211349 0.0725671821592537
AT4G23820_at 8.10596879255446 8.26051377028334 5.48954346628851 6.12993203176128 7.53370655734993 7.57139510335777 6.73740982228479 7.24659815842741 9.56127283389272 8.35521743348397 10.0535589233906 9.4345889812024 9.1914124947524 9.36149404842567 10.0597030803245 8.51755348786626 7.4639754563332 9.10994094918623 8.74884281722863 0.16688145593621 0.163860297960775 0.19395568456847 0.186092671257848 0.178532498328679 0.171727516511011 0.180862749676360 0.170190251488783 0.170590504894269 0.166725866950663 0.163156323284006 0.166872562213693 0.163156323284006 0.163156323284006 0.163156323284006 0.163156323284006 0.171349578798934 0.164511343318948 0.166115297688205 4 4 - 12397234 12397796 12397523.273 12397048 12400101 - gene protein_coding_gene FALSE TRUE AT4G23820.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056466.1); similar to Os02g0256100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046468.1); similar to putative polygalacturonase [Oryza sativa (japonica cultivar-group)] (GB:AAT44156.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.322947140024033 -2.70879094053161 0.0205123315687514 1 2.16844862883045 16.1531198573986 -0.322947140024033 0.144236141833
AT1G67020_at 1.06734673950550 1.24103798424387 1.36740804894392 1.46892641293293 1.08273873245868 1.49106431004739 1.10131680702864 1.04831646276955 1.23526859116761 0.866211099046786 0.945995387610319 1.60260502885622 1.36580942769674 0.994632489367498 1.31798847077449 0.990839606926946 1.52074642107451 1.09486954689687 0.769275673722039 0.203370878211739 0.202697433748002 0.199081677101520 0.213260103911889 0.199081677101520 0.204682313358197 0.210251685658534 0.209267249072718 0.215671485132468 0.199081677101520 0.199664757710068 0.205848915584162 0.208893596376961 0.212795073639187 0.200002263927580 0.203321639818144 0.204591301530069 0.218950642650798 0.208622522737165 1 1 - 25014760 25015245 25015019.273 25014671 25016650 - gene protein_coding_gene FALSE TRUE AT1G67020.1 unknown protein 0.255148610231906 2.70789457264491 0.0205450696262069 1 2.16704829840145 2.32657156326427 0.255148610231906 0.0793061474028807
AT4G24100_at 3.97851950881683 3.42695929325221 4.11484966482168 4.07153323302185 3.77541269025627 4.02979864090015 3.73490759548754 4.13469179166853 3.81597801549560 3.77159425867407 4.33668541530796 3.92404571238086 4.25800222544666 4.32408163375108 3.79348702292192 4.51328294231095 4.4234841740457 3.85671627137241 3.67641304568413 0.218403481815643 0.222136982825355 0.2255583971547 0.225978515225265 0.231727571726816 0.238823003045551 0.222089867356569 0.228157932959551 0.244137594726339 0.221853088436471 0.229637868543474 0.222374862254751 0.231728280542994 0.221886985392741 0.221589633306397 0.220261546825306 0.229021529915832 0.217214816622338 0.241913719429640 4 4|0 +|/ 12518524 12519324 12518803.143 12515086 12519851 + gene protein_coding_gene FALSE TRUE AT4G24100.1 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT4G10730.1); similar to putative Ste20-related protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAG13441.1); similar to Os03g0114300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048743.1); similar to Os10g0518800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065076.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.301595205675653 2.70754074202000 0.0205580068634207 1 2.16649554749341 7.87502652626653 0.301595205675653 0.126061099404240
AT3G19770_at 6.00905966886139 6.22681019323819 5.56428263204293 6.43014357264196 5.92248534727854 6.02910621328067 5.27577630373815 5.7802924221554 4.86578482953803 4.59623273898785 5.79283989032993 5.23881298284916 4.89728543967537 5.75953455974348 5.05084688134187 5.57712143247476 5.39016451402354 5.5390153355037 5.0501093255642 0.197647530706373 0.191879275680741 0.203317475552877 0.194476933337998 0.200236596063286 0.201941076665922 0.198182438121646 0.195121100555734 0.197088118267450 0.203209008428687 0.191658876191918 0.192622773160146 0.200474632227143 0.202378158213350 0.194040528083192 0.195710472283659 0.207969324855967 0.208118310414038 0.194525416137278 3 3 + 6868568 6869092 6868808.455 6866812 6869485 + gene protein_coding_gene FALSE TRUE AT3G19770.1|AT3G19770.2 vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein similar to vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09320.1); similar to Vacuolar sorting protein 9 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95105.1); contains InterPro domain Vacuolar sorting protein 9; (InterPro:IPR003123) 0.365923396221055 2.70726442106655 0.0205681157107671 1 2.16606388659016 11.0262836745827 0.365923396221055 0.1784255672784
AT4G01040_at 7.84116562338903 8.29733297725167 7.44470355336122 7.806342766871 8.2262271921522 8.05996421801564 8.52452343267631 8.34934931344127 8.10993615358356 8.22172569845123 8.37454261234134 8.24977751535148 7.76158917183956 7.96418647929638 8.16228346286777 8.03096231251515 7.79030752656035 8.04572362785676 8.40287219810818 0.180870661450462 0.176893761954888 0.193054030519888 0.180781807531023 0.178963757013132 0.195855614815682 0.178820020477010 0.181823945127207 0.187121457222265 0.180655826665209 0.186080020851607 0.182642164407104 0.179152970106018 0.198534640770998 0.177822299747713 0.185625974130596 0.191429386542092 0.182698274530362 0.176893761954888 4 4 + 454719 455330 455068.182 453369 455548 + gene protein_coding_gene FALSE TRUE AT4G01040.1 glycosyl hydrolase family 18 protein similar to MGC84097 protein [Xenopus laevis] (GB:AAH80071.1); similar to Os01g0619800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043596.1); contains InterPro domain Chitinase II; (InterPro:IPR011583) -0.283103249445974 -2.70680802367348 0.0205848232317651 1 2.16535092512909 16.2148342706246 -0.283103249445974 0.109065760781125
AT3G63130_at 3.78464172937792 3.90965359038261 3.23543404899655 3.52490281476239 3.47970078046005 3.93910844585405 4.12847458457627 4.26568836998160 4.08458686905519 3.63258792480735 4.16524096594049 4.26545809722045 3.78137812277731 3.35679259606368 4.19300406691226 3.80292582699642 3.47161251400926 3.7985715405993 4.05346757855212 0.214378470670445 0.218538009741826 0.228359537144144 0.211520926896300 0.212212547947985 0.214607512021601 0.212740539652942 0.222142100333291 0.211904970808071 0.207474908255788 0.213826573971552 0.208301089817237 0.207474908255788 0.213941668955575 0.210689817202778 0.209808896170933 0.207474908255788 0.213813678952691 0.207474908255788 3 3 + 23337095 23337562 23337317.091 23335596 23337888 + gene protein_coding_gene FALSE TRUE AT3G63130.1 RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator Encodes a RAN GTPase activating protein involved in nuclear import, cell plate formation and mitotic spindle formation. similar to RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2), RAN GTPase activator [Arabidopsis thaliana] (TAIR:AT5G19320.1); similar to Os05g0543200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056202.1); similar to Ran GTPase activating protein [Medicago sativa subsp. x varia] (GB:AAF19528.1); similar to hypothetical protein [Oryza sativa subsp. indica] (GB:AAD27557.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor type; (InterPro:IPR007091); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.273251268608998 -2.70672752087756 0.0205877716272451 1 2.16522516891213 7.67241075744215 -0.273251268608998 0.0993073185827085
AT2G28970_at 1.25251136648144 1.39521338184001 1.06342332779038 1.04143297665295 0.917992491456393 1.10001901247905 1.27028898005896 1.05300421228949 1.65289514685442 1.39877206476855 1.40994689143732 1.06814381460667 1.13220358842378 1.35600934154223 1.09442936224931 1.44663251776492 1.68684699471889 1.47986561995016 1.73805081860113 0.214788169304763 0.21640183656162 0.222939771089816 0.217017752503911 0.231303492655464 0.22871880840151 0.219086920558762 0.225065409236164 0.233305290983628 0.217217114752917 0.233157872247712 0.223042001771351 0.216002478115611 0.21639920290474 0.217185727878568 0.215078822517830 0.216813927782305 0.219514758314995 0.220538870568335 2 2 + 12454553 12455211 12454879.909 12450996 12455240 + gene protein_coding_gene FALSE TRUE AT2G28970.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G28990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.237175221738745 -2.70635319540589 0.0206014867153739 1 2.16464042710061 2.6021519401701 -0.237175221738745 0.055050362879001
AT1G58170_at 1.79424893609057 1.50380996028918 1.73350819113164 2.01998839282681 1.75150799157247 1.93377337956123 2.08392469552886 2.25800745206266 2.14394105365425 2.61618809765663 3.12838836104574 3.06568364330807 2.70995721897438 3.18483696587803 3.47928787749929 3.0856887343322 2.97300145494797 3.21177885798967 2.85465016123342 0.225864526073493 0.215224642936776 0.216631523979855 0.215297013752759 0.211274025735781 0.216463093873881 0.211309763031780 0.214118737700912 0.228467027475119 0.220509175722058 0.218063800698699 0.211274025735781 0.213072012517391 0.219590150706292 0.222035602288727 0.213059900043333 0.212307262595978 0.217461241234256 0.219721007898307 1 1 + 21539878 21540385 21540084.182 21539793 21540501 + gene protein_coding_gene FALSE TRUE AT1G58170.1 disease resistance-responsive protein-related / dirigent protein-related similar to disease resistance-responsive protein-related / dirigent protein-related [Arabidopsis thaliana] (TAIR:AT5G49040.1); similar to dirigent-like protein pDIR4 [Picea engelmannii x Picea glauca] (GB:ABD52115.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.258132423089517 2.70631163800399 0.0206030099159864 1 2.16457550990628 4.70638995493044 0.258132423089517 0.0829852929631815
AT2G38120_at 7.73518783019001 7.883541358887 6.29370903826562 6.42365692727874 7.18712533459047 7.4368703723522 7.45852075872853 8.00511926280719 8.02447881060544 7.26110358352272 8.04984635739918 8.32938320324944 8.4844851219031 7.92856602363225 8.67666454024183 8.52524517781741 7.48957684547609 7.6887930704239 8.04905608123125 0.175767015006953 0.166461897145672 0.181391734687585 0.185922651935237 0.164879911779783 0.172337040592461 0.159942169341933 0.162648071263177 0.165617262665071 0.170734780628322 0.168145879367390 0.171579079447587 0.163767570078840 0.168523116941653 0.178054127490572 0.159446799882353 0.175460001645961 0.162885845007893 0.162122578144493 2 2 + 15982505 15983787 15982979.545 15980071 15984258 + gene protein_coding_gene FALSE TRUE AT2G38120.1 AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Identical to Auxin transporter protein 1 (Auxin influx carrier protein 1) (Polar auxin transport inhibitor-resistant protein 1) (AUX1) [Arabidopsis Thaliana] (GB:Q96247); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT5G01240.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT1G77690.1); similar to AUX1-like auxin influx carrier protein [Pisum sativum] (GB:BAC98948.1); similar to Auxin transporter-like protein 2 (AUX1-like protein 2) (MtLAX2) (GB:Q9FEL7); similar to putative auxin influx carrier protein [Prunus avium] (GB:CAI05895.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.283447333566663 -2.70623746638177 0.0206057288012449 1 2.16445964599636 15.2653577942063 -0.283447333566663 0.109454541513671
AT2G21790_at 4.47187240008116 5.19169079595301 4.95339412279025 4.86328238966687 3.73361468564449 3.5465307095564 5.64954748509957 5.11110751050207 5.06493157237438 5.07611966400173 4.68473820230256 6.05087991019728 4.07609708298746 4.68587560403966 6.407096992279 5.07237520232558 5.09715259562465 5.17969658406596 4.88290068010585 0.197466672322601 0.195508814872445 0.194871598677310 0.196247019144625 0.199760737749478 0.202220715079914 0.192840434132127 0.196344318593977 0.190121711533986 0.190121711533986 0.190446507287338 0.198066242314932 0.199008382199298 0.195999573606633 0.192728566965602 0.199323024926938 0.193876724279445 0.190537091860089 0.190121711533986 2 2 + 9303667 9304629 9304140.455 9300435 9304922 + gene protein_coding_gene FALSE TRUE AT2G21790.1 R1/RIBONUCLEOTIDE REDUCTASE, REDUCTASE PROTEIN R1; ribonucleoside-diphosphate reductase encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair Identical to Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) (RNR1) [Arabidopsis Thaliana] (GB:Q9SJ20;GB:O82573); similar to ribonucleotide reductase large subunit A [Glycine max] (GB:AAN87547.1); similar to ribonucleotide reductase [Nicotiana tabacum] (GB:CAA71816.1); similar to putative ribonucleotide reductase large subunit [Musa acuminata] (GB:AAR95994.1); contains InterPro domain Ribonucleoside-diphosphate reductase, alpha subunit; (InterPro:IPR013346); contains InterPro domain Ribonucleotide reductase large subunit; (InterPro:IPR013508); contains InterPro domain Ribonucleotide reductase large subunit, N terminal; (InterPro:IPR013509); contains InterPro domain Ribonucleotide reductase R1 subunit, N-terminal; (InterPro:IPR008926); contains InterPro domain Ribonucleotide reductase large subunit, C-terminal; (InterPro:IPR000788); contains InterPro domain ATP-cone; (InterPro:IPR005144) -0.341547010713666 -2.70551457360071 0.0206322463091347 1 2.16333042815242 9.77249150935594 -0.341547010713666 0.159658911173004
AT3G60240_at 9.11731750787685 9.46875424492849 9.38394835322826 9.34658374888568 9.38611051631808 9.3549117558647 9.00901332717185 9.04571082767077 8.82381897725018 9.19476535140814 9.47976352520728 9.56042628781567 9.46098500103222 9.23931307336612 8.9258113036441 9.4682858008587 9.42783383000159 8.93167099459463 9.0912964313129 0.107562000415964 0.105429687290276 0.104638609180458 0.105432159879350 0.105539983598578 0.103156658842201 0.104007625399407 0.114355725731065 0.112376212108944 0.106462663699661 0.111466304517442 0.102315061136608 0.102863058097109 0.108665363345365 0.110238403103524 0.102315061136608 0.102712657721571 0.107787882125516 0.109660286154319 3 3 + 22278221 22279226 22278860.636 22272625 22279430 + gene protein_coding_gene FALSE TRUE AT3G60240.2|AT3G60240.3|AT3G60240.4 EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication. Identical to Eukaryotic translation initiation factor 4G (Protein synthesis initiation factor 4G) (Cucumovirus multiplication 2 protein) (EIF4G) [Arabidopsis Thaliana] (GB:Q76E23;GB:Q9LKQ7;GB:Q9LY39;GB:Q9M4Q5); similar to MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G24050.1); similar to putative eukaryotic translation initiation factor 4G [Oryza sativa (japonica cultivar-group)] (GB:BAD30897.1); similar to Os07g0555200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059958.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) 0.241411961868414 2.70469954359036 0.0206621842704566 1 2.16205732157832 18.4382378587708 0.241411961868414 0.0617259478829045
AT2G41160_at 4.80796328971855 4.58270669718021 4.9935553538893 5.10482025954158 5.03335742895781 4.68104568308708 4.74938474561907 4.4490411701591 4.04740111487222 3.71166137441953 4.08555544430925 4.05912629583068 3.92055090038032 4.0317069472764 4.32217564941865 4.38997811258819 4.37341801292866 3.93066223756105 3.98463519225824 0.146885676392487 0.143282866595862 0.145514929681145 0.143373092311296 0.147815989898660 0.146296809146675 0.145971312593973 0.148842842287380 0.156766048990419 0.152408511587798 0.145913357981691 0.145957058856122 0.145478826990805 0.148706079285651 0.148109617156698 0.146081410365911 0.148009224792891 0.148736535115449 0.147250258926371 2 2|0 -|/ 17163490 17165856 17164589.125 17163107 17165958 - gene protein_coding_gene FALSE TRUE AT2G41160.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G56740.1); similar to UBA/TS-N domain, putative [Medicago truncatula] (GB:ABD33028.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.265250755943183 2.70430722303463 0.0206766104939763 1 2.16144451666599 8.82709062546241 0.265250755943183 0.0911540273707602
AT3G47520_at 8.19162041430157 8.30369030805067 8.29072427830526 8.18474136782696 8.0901184199662 7.84185130680938 8.72386913804499 8.98503692585882 7.59822271977322 7.79872763567892 8.38516956053319 9.10359666528722 8.32856508618988 8.34214769819278 8.53929178922287 8.57284132484988 8.56834998806641 8.3168271853084 7.33983321654426 0.180109028146225 0.170597046770808 0.177853488671831 0.186604636982619 0.174852132653461 0.170782206071820 0.187788848250013 0.166221715039099 0.183129330426838 0.178662001811168 0.177734886349589 0.169262045595345 0.170865339190179 0.175519820713665 0.187767003212146 0.167282140926925 0.189153186252276 0.187283586107752 0.188078152798581 3 3 + 17525254 17525669 17525519 17524259 17526026 + gene protein_coding_gene FALSE TRUE AT3G47520.1 MDH (malate dehydrogenase); malate dehydrogenase Encodes a protein with NAD-dependent malate dehydrogenase activity, located in chloroplasts. Identical to Malate dehydrogenase, chloroplast precursor (EC 1.1.1.37) (pNAD-MDH) [Arabidopsis Thaliana] (GB:Q9SN86;GB:O81844); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana] (TAIR:AT1G53240.1); similar to malate dehydrogenase (NAD), mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT3G15020.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to malate dehydrogenase [Citrus junos] (GB:ABI75147.1); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) 0.245737725768565 2.70425340881667 0.0206785901042465 1 2.16136045954507 16.3757197796647 0.245737725768565 0.0678315147985677
AT4G36440_at 6.16391721798625 6.67523967509694 5.75111568791827 5.87573022098699 6.67757220172285 6.03326292573654 5.97611314723524 6.0312281608042 6.01953522346301 6.09338025031852 5.48927191775604 5.69983249595947 5.71033367423221 5.8193264241332 5.42508665867903 5.61023838262395 5.17902521689148 5.67727251036872 6.1688905798883 0.249802471771441 0.240843606749306 0.246167185421511 0.240891351401917 0.235375449861506 0.248796820924982 0.237967947393533 0.237985127636372 0.26981500099685 0.235375449861506 0.235375449861506 0.242870125180181 0.239550358810352 0.240240871720268 0.250805855138728 0.239839872303561 0.245178890313014 0.259932539183401 0.244058428093626 4 4|0 -|/ 17207258 17208204 17207765.6 17206861 17210010 - gene protein_coding_gene FALSE TRUE AT4G36440.1 similar to putative protein [Medicago truncatula] (GB:ABE84072.1) -0.322420616166128 -2.70387549599936 0.0206924973089255 1 2.16077016942117 11.9831392853378 -0.322420616166128 0.144285621375047
AT3G02840_at 1.10966881366877 1.69258051235831 1.42583641250483 1.72484547132208 1.08475748603127 1.19312057446605 0.843096542999054 0.550001987826647 0.547914770910904 0.816570486738075 0.72639040351975 1.20052153035980 1.10350921469931 0.936918310821753 0.547447127695112 0.503836621002807 1.19895173067011 0.67751689012598 0.342641262607194 0.237444065884948 0.236696321990572 0.235730790439742 0.245469399412369 0.231296778739104 0.23343188310635 0.238238398076190 0.242495361056927 0.231296778739104 0.231296778739104 0.238937357666960 0.234973830489623 0.236124155633532 0.232113410546605 0.231751116181863 0.235528891779395 0.237386292020483 0.237701159050884 0.240054456839903 3 3 + 619086 619576 619360.273 618416 619693 + gene protein_coding_gene FALSE TRUE AT3G02840.1 immediate-early fungal elicitor family protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37490.1); similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] (GB:AAK69401.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.300573663530482 2.70292458513695 0.020727531945406 1 2.15928490883556 1.91845280116240 0.300573663530482 0.125609489026916
AT2G38780_at 6.43246689142742 6.35613569541526 6.60055984684147 6.12614679114308 6.90785148837276 6.06056397011804 7.81747289615865 7.41069935055355 7.72036633724968 7.73401595311031 7.84159188136158 7.82570217814898 7.43509083948258 7.7598946382744 7.3434864974919 8.17949590077914 6.83761640087576 7.80664442119019 7.91602758334216 0.198134344973746 0.190303951238434 0.19134542744739 0.192926648258734 0.184142754360127 0.19199075466324 0.187531118851940 0.180052720697562 0.186676968984897 0.184937957809608 0.178836062884445 0.179529998808965 0.190877139493464 0.186072269806670 0.186358798184747 0.182752453859806 0.205059508833547 0.187815233448299 0.184316843640897 2 2 + 16219383 16221146 16220558.636 16217935 16221299 + gene protein_coding_gene FALSE TRUE AT2G38780.1 binding similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88378.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.37092973206835 -2.70290718049285 0.0207281737372491 1 2.15925772442451 14.4234006008878 -0.37092973206835 0.182673527171948
AT3G03740_at 7.13756304180504 7.06182053759738 7.06624880153535 7.01094215056072 7.48525515597784 7.03018409683504 6.99526507733696 6.85243860628574 5.45888338532171 5.70685568780632 6.2111029299425 5.75220766870703 5.9243109373823 6.33961467866748 5.98146370582503 6.13960624168558 6.05483845287478 5.99211062961079 5.83908019692095 0.240893161918096 0.237301220972499 0.233422618141742 0.234891791692707 0.238519132834361 0.256366679066446 0.231293314904739 0.226835363975102 0.239657563098405 0.229494934602848 0.225746261600045 0.227856265687352 0.234591110426385 0.229450079563866 0.232254382279885 0.225746261600045 0.226595405326210 0.238887633681008 0.228057807705331 3 3|0 -|/ 937259 937769 937526.9 936885 939815 - gene protein_coding_gene FALSE TRUE AT3G03740.1 ATBPM4 (BTB-POZ AND MATH DOMAIN 4); protein binding similar to ATBPM5 (BTB-POZ AND MATH DOMAIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT5G21010.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.258759775520784 2.70255201211796 0.0207412747900164 1 2.15870298892367 12.9388046812934 0.258759775520784 0.0841203790260029
AT4G12750_at 5.63749225012785 5.52418514057507 5.48316908801087 5.41728028513262 5.54836240202108 5.44053418566493 4.8850244077724 4.67092412876708 3.55985571923449 4.18645708799333 3.83813784685750 4.12419543864303 4.22663849441848 3.5305930964794 4.22622969097319 4.10324205267333 4.90496219880258 3.89997955839548 4.05911118332475 0.257671312789356 0.251299314673836 0.249925662848093 0.254440129970555 0.256325287386024 0.271477125763265 0.251426492618861 0.254002967360230 0.268280080937800 0.250182312386806 0.253565484832151 0.25440085003918 0.249232203141676 0.257279126874281 0.261833593850429 0.252289605761534 0.250169012348893 0.251385428081807 0.249232203141676 4 4|0 -|/ 7498243 7498984 7498578.6 7497811 7503640 - gene protein_coding_gene FALSE TRUE AT4G12750.1 DNA binding / sequence-specific DNA binding / transcription factor similar to HB-1 (homeobox-1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G28420.1); similar to DDT [Medicago truncatula] (GB:ABE90616.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.232267987683975 2.70227461613662 0.0207515127778317 1 2.15826973096217 9.34681579967877 0.232267987683975 0.0472808933679364
AT3G09570_at 7.49116550785621 7.87310123111383 7.44156229357645 7.79470868201966 7.94448329263723 7.47140547627478 7.27327818137204 7.66207514063142 6.75309620531146 6.2472560457392 7.05406829187933 7.22503022662469 7.068587621804 7.25755590691102 7.33389601622785 7.09466153607966 6.99266960190761 6.94978080905133 6.73478725889926 0.199857053254312 0.196977822686431 0.205551000962654 0.203594884510265 0.210332165985318 0.198697836379329 0.196907929090549 0.193706490689409 0.214561388396292 0.205062822130183 0.20440018859127 0.198458040821567 0.198726651769781 0.200107596520529 0.202034086148378 0.196572428364092 0.200837098519367 0.203697782262148 0.199320089493559 3 3 + 2941269 2941808 2941501.182 2940451 2942114 + gene protein_coding_gene FALSE TRUE AT3G09570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18520.1); similar to Os01g0836800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044733.1); similar to Os05g0462500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055767.1); similar to unknown [Sorghum bicolor] (GB:AAQ06259.1); contains InterPro domain Lung seven transmembrane receptor; (InterPro:IPR009637) 0.315893167772184 2.70151424433515 0.0207796019126328 1 2.15708214870208 14.4691780196655 0.315893167772184 0.13904303785811
AT2G18670_at 7.06673671740242 7.71523885185689 6.61025151265037 6.75985706507792 7.54236890352989 7.34444641921787 5.28459196027263 5.90742151569543 5.56530869852514 5.08854562216412 5.18718935578856 5.41783138328731 5.84400757548904 5.57655519447701 5.22533250559441 5.72741295360268 5.95056999540911 5.25324077545835 5.5676875114952 0.210931082264449 0.212624141549677 0.214369763399415 0.214032815257320 0.231862245493608 0.217700044452744 0.213840882715629 0.212543369894568 0.229199932787291 0.214377351605913 0.215567719409770 0.213470689199307 0.207319188185588 0.207319188185588 0.228871984185595 0.207319188185588 0.220247977979758 0.217060673449929 0.218737895838514 2 2 + 8100551 8100986 8100759.818 8100302 8102046 + gene protein_coding_gene FALSE TRUE AT2G18670.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G30370.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE91399.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.343160285236163 2.700766547505 0.0208072596136923 1 2.15591439680891 12.2438381572712 0.343160285236163 0.161417131192242
AT3G23800_at 0.674048920851817 1.14338080625557 1.10180089518483 1.03707260793111 0.835988503243474 0.558821371322674 0.777471922531687 1.1259672812654 1.55637843439953 1.83553081794729 0.72056371018451 1.15883534485867 1.03542873862564 1.14859657039814 0.995926249685323 1.26575300697502 1.36303779422272 1.64684110620113 1.68467999071942 0.221331041525395 0.218495830520861 0.220911665550016 0.217556868635051 0.214571923669395 0.223873869302461 0.219515761293614 0.219673087529466 0.218101393620834 0.215266851319866 0.220335504163302 0.220201794926507 0.228128460064366 0.216276843626355 0.215112629646667 0.214571923669395 0.216236731988145 0.215450477766846 0.225505084628257 3 3 + 8583116 8583668 8583396.091 8581661 8583842 + gene protein_coding_gene FALSE TRUE AT3G23800.1 selenium-binding family protein similar to EDA38 (embryo sac development arrest 38), selenium binding [Arabidopsis thaliana] (TAIR:AT4G14040.1); similar to selenium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G14030.1); similar to selenium binding protein [Lotus japonicus] (GB:CAC67491.1); similar to selenium binding protein [Glycine max] (GB:CAC67472.1); similar to selenium binding protein [Medicago sativa] (GB:CAC67501.1); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Selenium-binding protein; (InterPro:IPR008826) -0.286059993758555 -2.70060119244411 0.0208133811163452 1 2.15565615006803 2.33635365332297 -0.286059993758555 0.112516517825477
AT3G43810_at 9.14703773102576 9.08041879857274 9.1046105124172 9.11217328216996 9.10777073974173 8.50382673843774 9.08783299416659 9.01075543448296 8.82083481806167 8.621779484555 9.52904423256444 9.7270334158876 9.11664352512989 9.474816197852 9.89836002359255 9.05325463537484 8.82866868208317 9.19774427712222 8.56856585344824 0.105790985510228 0.0998284365915694 0.0998284365915694 0.107291052185792 0.104175125942509 0.107723202104437 0.106775729229941 0.105999062708546 0.108636231500761 0.107315497924832 0.105996685981756 0.101676797200426 0.103270323397907 0.0998284365915694 0.105601401993039 0.104184499041602 0.110844899666236 0.103640173388526 0.110872516720459 3 3 - 15675611 15677300 15675927.091 15675358 15677447 - gene protein_coding_gene FALSE TRUE AT3G43810.1 CAM7 (CALMODULIN 7); calcium ion binding EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.279193158487754 2.69949759033513 0.0208542826509253 1 2.15393261878498 18.0310977834047 0.279193158487754 0.10599998430746
AT2G20540_at 2.13346854775097 2.02515739061795 1.97010096487927 1.82261796680932 2.21142682870966 1.88279271879998 2.04625623869595 2.31617995388566 2.53070657531996 2.41367399635956 1.91928337298724 1.69830658670999 2.03323853749274 2.36359398068331 1.92741952795316 1.76486903522587 2.28382199441977 2.10603673051674 2.14591942333491 0.179865525369856 0.181205247867576 0.178992339050158 0.185416836522032 0.193920451220928 0.180249436456902 0.187231290885456 0.195589277537743 0.186954275461338 0.184473657786538 0.188629066555007 0.175983258342661 0.181588142653978 0.176955554535752 0.193658307780047 0.177603254553528 0.183744190428513 0.179150131313401 0.186492161702229 2 2 + 8852256 8852765 8852467 8851241 8852845 + gene protein_coding_gene FALSE TRUE AT2G20540.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G56310.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93365.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.254946511930473 -2.69851767535576 0.0208906669614143 1 2.15240231587491 4.23875235247863 -0.254946511930473 0.0801192131704686
AT4G08620_at 0.857463948567461 1.06761744436098 1.26012891832131 1.33845572440940 1.06670814742847 1.24937092654240 0.927610966378883 0.973019777989962 0.890793207396944 0.769035924303034 1.00492961372496 1.15002109111859 1.59230732766265 0.809426046675825 1.18214317360528 0.681448375957976 0.91080739251005 1.27252865374526 0.98014235767984 0.166689142706899 0.172818483076336 0.180011954252767 0.184054702015243 0.171327120100812 0.172727964228209 0.172099243927113 0.165874390504736 0.176808262353342 0.177145439301934 0.176930269680315 0.168679598516675 0.168980199799480 0.177568716038019 0.176371773999501 0.168559096068989 0.168287305633461 0.169354774550686 0.168681250632030 4 4|0 +|/ 5502572 5505936 5503589.667 5500310 5506262 + gene protein_coding_gene FALSE TRUE AT4G08620.1 SULTR1;1 (sulfate transporter 1;1); sulfate transporter High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. Identical to Sulfate transporter 1.1 (High-affinity sulfate transporter 1) (Hst1At) (AST101) (SULTR1;1) [Arabidopsis Thaliana] (GB:Q9SAY1;GB:O22277); similar to SULTR1,3 (sulfate transporter), sulfate transporter [Arabidopsis thaliana] (TAIR:AT1G22150.1); similar to SULTR1,2 (SULFATE TRANSPORTER 1,2) [Arabidopsis thaliana] (TAIR:AT1G78000.2); similar to SULTR3,1 (SULFATE TRANSPORTER 1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G51895.1); similar to sulfate transporter [Brassica napus] (GB:CAC39420.1); similar to sulfate transporter [Brassica napus] (GB:CAC94920.1); similar to sulfate transporter 2 [Lycopersicon esculentum] (GB:AAK27688.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) 0.233849428883104 2.69848439505022 0.0208919037668268 1 2.15235034408105 2.07026795966737 0.233849428883104 0.050669043624133
AT1G24150_at 5.05089100585438 6.35486308109882 6.74357100846887 6.9669372214105 4.74112376417163 5.05958539652911 3.37704232086414 2.70488671123565 3.94019152367361 2.75469132783834 2.8508746891788 3.33626264034468 2.17560684218367 3.11596638268245 2.71391342226545 2.48513271298643 2.24678510825922 3.04718660699677 3.17008884383765 0.207106845177775 0.216742609186406 0.2112501520822 0.226550457756677 0.207759759116683 0.206524313254411 0.205999778602533 0.206972942124542 0.210021681355284 0.207439407798614 0.203215310063561 0.204396946623968 0.20697740974171 0.206467082226307 0.201807120029120 0.201807120029120 0.208447234991431 0.210071115076259 0.206051724807887 1 1 + 8551301 8551783 8551436.909 8549507 8551982 + gene protein_coding_gene FALSE TRUE AT1G24150.1 ATFH4/FH4 (FORMIN HOMOLOGUE 4); actin binding / protein binding Encodes a group I formin. Localized to cell junctions. Polymerizes actin. Binds profilin. similar to ATFH8 (FORMIN 8), actin binding / actin filament binding / profilin binding [Arabidopsis thaliana] (TAIR:AT1G70140.1); similar to Pyridoxal-dependent decarboxylase; Actin-binding FH2 [Medicago truncatula] (GB:ABE93173.1); similar to Os02g0739100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048066.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) 0.482012860022049 2.69769608839578 0.0209212210831736 1 2.15111931418835 8.14225753823516 0.482012860022049 0.262646963071045
AT1G14580_at 5.04243024998201 5.9802069938216 4.43006519466759 4.44424131069834 5.85294825306043 4.79364486601618 4.95666152001906 5.51805748912032 4.23629202586799 4.14922766801569 5.54335244679767 7.01783990327494 6.4341141410987 5.22888156517548 5.87726660758475 5.02099963871437 3.90937832575501 5.29819402947316 3.85781986000124 0.291246790008189 0.287528982310003 0.323382754908817 0.305790432339851 0.287528982310003 0.297844490875112 0.294881819165908 0.292124274061093 0.314370810323736 0.297045005108461 0.287528982310003 0.299658276203227 0.290772004126677 0.292970929630643 0.287528982310003 0.287528982310003 0.308247677972508 0.290236994591838 0.287528982310003 1 1 + 4991917 4992397 4992145.455 4989558 4992727 + gene protein_coding_gene FALSE TRUE AT1G14580.1 zinc finger (C2H2 type) family protein similar to ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4), transcription factor [Arabidopsis thaliana] (TAIR:AT2G02080.1); similar to Os08g0554400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062466.1); similar to INDETERMINATE-related protein 7 [Zea mays] (GB:AAV51391.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.483012995240422 2.69703753107653 0.0209457442838578 1 2.15009093177736 9.93846524310447 0.483012995240422 0.263413716107087
AT1G34140_at 0.462744003459997 0.7066355417965 0.253401361378725 0.762376007738311 0.822281712774638 1.02781910441682 0.62596712622828 0.481858866379198 0.935494073683333 0.618241626046546 1.29466725112089 1.17322638301945 1.20890314503422 1.32714199139325 0.799308679543382 1.26105530792005 1.23140544188772 1.20935594651247 0.773903344476048 0.230759804615098 0.230249611049463 0.229969855342338 0.229004231015004 0.240926744621634 0.23251791123436 0.230127828495108 0.236751625663791 0.24420887187934 0.238879954160217 0.240821633219948 0.228958904748145 0.234527928428412 0.243299086227289 0.240555767105451 0.230101798512198 0.234193355786880 0.238535161520813 0.236560843489304 1 1 - 12433356 12433958 12433518 12433334 12434713 - gene protein_coding_gene FALSE TRUE AT1G34140.1 PAB1 (POLY(A) BINDING PROTEIN 1); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, non-consensus splice donor TA at exon 1; similar to polyadenylate-binding protein (poly(A)-binding protein) from (Triticum aestivum) GI:1737492, (Nicotiana tabacum) GI:7673355, {Arabidopsis thaliana} SP:P42731; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Only member of the class IV PABP family. similar to PAB5 (POLY(A)-BINDING PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT1G71770.1); similar to poly(A)-binding protein [Triticum aestivum] (GB:AAB38974.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.279710749506541 2.69568476766883 0.0209962076658612 1 2.14797858278131 1.62489181537451 0.279710749506541 0.106895556683257
AT3G27740_at 6.88293755699485 7.07607428806729 5.94388814819763 6.6751060119056 6.47031761070007 6.31822781893171 7.29427522777162 7.3068173704818 6.10230477024557 6.24269725793041 6.10785592218637 6.70189983231362 6.56608805016406 6.2071515396914 6.93543725605601 6.24668694840282 6.4273389780169 6.32280732674577 6.46133790086637 0.206134768419642 0.198286977147062 0.203486925850537 0.195263648857353 0.189782289853158 0.204634058337171 0.194658433914276 0.205346682174767 0.203233382759552 0.198793312240507 0.198903794249069 0.189782289853158 0.195872778075417 0.197819679551245 0.199245840068237 0.189782289853158 0.213645618544455 0.204403003776233 0.196012106901677 3 3 - 10282899 10283511 10283288.727 10282498 10285103 - gene protein_coding_gene FALSE TRUE AT3G27740.1|AT3G27740.2 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)|CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) carbamoyl phosphate synthetase small subunit mRNA (carA), similar to ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1), anthranilate synthase [Arabidopsis thaliana] (TAIR:AT1G25220.1); similar to putative carbamoyl phosphate synthase small subunit [Nicotiana tabacum] (GB:CAC85725.1); similar to Carbamoyl-phosphate synthase, GATase re (GB:ABE82026.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Carbamoyl-phosphate synthase, GATase region; (InterPro:IPR001317); contains InterPro domain Carbamoyl-phosphate synthase, small subunit; (InterPro:IPR006274); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain Carbamoyl-phosphate synthase, small chain; (InterPro:IPR002474) -0.308756479022733 -2.69561282885051 0.0209988946413483 1 2.14786625300830 13.1000496081536 -0.308756479022733 0.133518146675402
AT1G78670_at 10.2272560055696 10.4119167937549 10.8311809169328 10.6870474132184 11.0663916338163 10.7195647395001 10.7548629489992 10.9100486013448 9.38309520385708 10.0741698861508 9.76532292429618 9.24954442197974 10.5550400702979 10.1870787435239 9.30471331460719 10.4812110457921 10.2110604385805 10.2754732027078 9.7906220106586 0.0883724238456403 0.0883724238456403 0.0883724238456403 0.0887230275322265 0.0938087910506268 0.0883724238456403 0.0898068014464686 0.0910020316419008 0.0945228319264585 0.0893725745004199 0.0917902613387069 0.090440281603837 0.0883724238456403 0.0940045333556622 0.0949360978353047 0.0892543636680023 0.104330103863165 0.0912755051077542 0.0886511536628092 1 1|0 +|/ 29596740 29598042 29597483.667 29595838 29598392 + gene protein_coding_gene FALSE TRUE AT1G78670.1 ATGGH3 (GAMMA-GLUTAMYL HYDROLASE 3); gamma-glutamyl hydrolase similar to ATGGH2 (GAMMA-GLUTAMYL HYDROLASE 2), gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78680.1); similar to ATGGH1, gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78660.2); similar to Gamma-glutamyl hydrolase precursor (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GB:P93164); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.252204954225391 2.69470440569044 0.0210328543800705 1 2.14644781184574 20.5775217418647 0.252204954225391 0.0772462897127282
AT4G24920_at 10.1837975948596 10.4235648546299 10.5741427202183 10.6666360652126 10.1962368441455 9.39984475768406 9.56985293190971 9.4208176251828 9.55465345324365 9.23667172660311 10.1454979154085 10.1392261198802 9.42373150228748 9.53304225210754 9.91520503820066 9.71787111076304 9.01698263358267 9.2903318562479 9.133174786918 0.119715459754011 0.118134042865804 0.119512909838443 0.120153279253386 0.116872367148355 0.118716153105399 0.1192997524979 0.121771414501245 0.123667829034883 0.130281323289315 0.117546503835431 0.117425019904003 0.122262418623533 0.124748966745955 0.116644925381643 0.116560446052022 0.128546713093220 0.119184768730699 0.119823620281048 4 4 - 12820288 12820637 12820453.818 12819521 12820746 - gene protein_coding_gene FALSE TRUE AT4G24920.1 protein transport protein SEC61 gamma subunit, putative Identical to Protein transport protein SEC61 gamma-1 subunit (SEC61G2) [Arabidopsis Thaliana] (GB:Q9SW34); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT5G50460.1); similar to Os02g0178400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046076.1); similar to Protein transport protein SEC61 subunit gamma (GB:Q7Z1B8); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_797211.1); contains InterPro domain Protein secE/sec61-gamma protein; (InterPro:IPR001901); contains InterPro domain Protein translocase SEC61 complex gamma subunit; (InterPro:IPR008158); contains InterPro domain SEC61 complex gamma subunit; (InterPro:IPR008159) 0.324638121570546 2.69410306194863 0.0210553644817928 1 2.14550888258155 19.5323130288043 0.324638121570546 0.147095979253244
AT3G60730_at 0.465389950507956 0.698737866843534 0.391670940453231 0.55939201971896 0.532420602089223 0.786880260166977 0.633535123729301 0.654955746133566 1.36391840729097 1.21574298427659 0.844238266543317 0.569249835096441 0.769984316547995 0.73469925104696 1.28320272416552 0.900184086241935 0.339966349889672 0.79294660733195 1.08444013506076 0.212408799855515 0.20984808584833 0.212583466546287 0.214865911246299 0.21962369184681 0.208781441327566 0.220118452738126 0.214823934510977 0.215964060507579 0.217726237638902 0.209723741234393 0.216019859258465 0.218237658573707 0.208781441327566 0.209832985283944 0.2089947405896 0.216493336676783 0.215976418598197 0.211884630262609 3 3 + 22457143 22458149 22457632.636 22455865 22458248 + gene protein_coding_gene FALSE TRUE AT3G60730.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G23200.1); similar to pectinesterase (EC 3.1.1.11) PECS-c2 - sweet orange (GB:T10494); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.243810981065645 -2.69356959414299 0.0210753537876418 1 2.14467595267012 1.59071086628072 -0.243810981065645 0.0665282476057844
AT4G27240_at 3.62403346345972 3.73731632597839 2.87817695973732 2.93497409650495 3.57804274163161 3.71486168227298 4.00520835438641 3.51823193544527 3.48866526461098 4.04961939037605 4.22537079910127 4.32719342108384 3.58940341107994 3.87780841183373 4.11783021265161 3.71731920972489 3.44925070247493 3.38207592814405 4.21509011411657 0.202951451520739 0.202279687680416 0.20797716317838 0.205210767447687 0.200399861890581 0.215961237482729 0.215415274592838 0.203647720686594 0.212070740930509 0.204243602789387 0.205061802629939 0.208204153324015 0.206900604298839 0.207340564835667 0.201461985163323 0.200399861890581 0.221963313410612 0.20736970421808 0.200637094146132 4 4 + 13641204 13641614 13641407.545 13639969 13641798 + gene protein_coding_gene FALSE TRUE AT4G27240.1 zinc finger (C2H2 type) family protein similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G54630.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93174.1) -0.263346863735075 -2.69342582907457 0.0210807439562947 1 2.14445148813276 7.37564224578357 -0.263346863735075 0.0902417230348197
AT1G26670_at 10.6063360055915 10.7153660165810 10.8326516930716 10.9809118928196 11.3345179787849 11.1327757553755 10.4811224513782 10.3876157278347 10.9456018936625 10.7936202610502 11.1128929222049 10.5681418893259 10.8253344992577 10.8199343645060 10.4141184042447 10.9162434592455 10.7794045474097 10.9023257817931 10.8078510964592 0.0807701750376123 0.0784780805241471 0.0789143688983221 0.0810953402786767 0.0795230840505908 0.088463138791501 0.0822189929387158 0.0809958855742288 0.087509971482605 0.0803500081127845 0.0792742254463 0.0801731935973796 0.0790964346589306 0.0813430973153438 0.0870643611312524 0.0784780805241471 0.0812185422072091 0.0838454578403247 0.0796660808122048 1 0|1 /|+ 9217029 9217754 9217426.444 9215888 9217990 + gene protein_coding_gene FALSE TRUE AT1G26670.1 VTI12 (VESICAL TRANSPORT V-SNARE 12, vesical transport v-SNARE 12); SNARE binding / receptor member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Identical to Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle transport v-SNARE protein VTI1b) (Vesicle soluble NSF attachment protein receptor VTI1b) (AtVTI1b) (VTI12) [Arabidopsis Thaliana] (GB:Q9SEL5;GB:Q9LQY5); similar to VTI11 (VESICLE TRANSPORT V-SNARE 11, vesicle transport v-SNARE 11), receptor [Arabidopsis thaliana] (TAIR:AT5G39510.1); similar to vesicle transport v-SNARE 11-like [Solanum tuberosum] (GB:ABB29948.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.232939673053862 2.69275746204530 0.0211058209340867 1 2.14340796443958 21.6295741404575 0.232939673053862 0.0499502021566063
AT4G17340_at 11.1775948627629 11.4754119588834 11.9227076182112 12.1947971183538 12.4740489097756 12.1235426913657 12.5783011702157 12.810524564052 12.2603615552072 12.3570069772908 12.7061957001116 12.4028905349703 12.7355701166303 12.8486436817737 12.2956452860394 12.6874303026061 12.6939596737750 12.7555586607906 12.1698660612863 0.080601988745938 0.0787791169058785 0.0828302976834345 0.0781431655923382 0.0792867886600662 0.0852942977893819 0.0858397803081998 0.0781431655923382 0.089593023364903 0.079292716605248 0.0781431655923382 0.07954816031767 0.0785175977037333 0.079113716577544 0.0801056749248349 0.0781431655923382 0.0910435227655645 0.0804403403151386 0.0781431655923382 4 4 + 9699529 9700203 9699942.545 9699265 9700422 + gene protein_coding_gene FALSE TRUE AT4G17340.1 DELTA-TIP2/TIP2;2 (tonoplast intrinsic protein 2;2); water channel Identical to Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (TIP2.2) [Arabidopsis Thaliana] (GB:Q41975;GB:O23577); similar to AtTIP2,3 (Arabidopsis thaliana tonoplast intrinsic protein 2,3), water channel [Arabidopsis thaliana] (TAIR:AT5G47450.1); similar to Tonoplast intrinsic protein, putative [Brassica oleracea] (GB:ABD65120.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.273320579386877 2.69261068399254 0.0211113319745173 1 2.14317880311902 24.5461902496268 0.273320579386877 0.100834607969453
AT2G04032_at 3.6164990572681 3.77668865258748 2.09673741257323 2.35071074217655 2.56811815859046 2.54528542165072 2.95059699328459 2.44329081939718 3.23830383295260 3.39759040092324 3.02015444045684 4.90211903927519 3.48562268189486 3.62413345611918 3.51089378832383 3.65711918623891 4.04556167946805 3.2863037239806 3.66585392263310 0.228019248404415 0.227746508138066 0.241827757883552 0.230132997381762 0.231746716563744 0.231834884780236 0.238117501541036 0.236852490842771 0.230469679304806 0.229799315625906 0.233441185157747 0.238687058129236 0.228943375601053 0.229342440294378 0.229843959192077 0.2286355861581 0.243396534337743 0.230928469944005 0.230118489210358 2 2|0 +|/ 1290718 1291200 1290952.6 1289829 1291380 + gene protein_coding_gene FALSE TRUE AT2G04032.1 ZIP7 (ZINC TRANSPORTER 7 PRECURSOR); cation transporter Identical to Zinc transporter 7 precursor (ZRT/IRT-like protein 7) (ZIP7) [Arabidopsis Thaliana] (GB:Q8W246;GB:Q6DBB4); similar to IRT1 (IRON-REGULATED TRANSPORTER 1), cadmium ion transporter/ iron ion transporter/ manganese ion transporter/ zinc ion transporter [Arabidopsis thaliana] (TAIR:AT4G19690.2); similar to iron-regulated transporter 2 [Lycopersicon esculentum] (GB:AAD30549.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) -0.274491749793281 -2.69190364695232 0.0211378989303849 1 2.14207494080754 6.3561931830107 -0.274491749793281 0.102094045380102
AT3G15290_at 7.87747540118003 8.0824177765758 7.80842470579503 7.92311133637525 8.28177990350666 8.2950186511438 7.75005230565678 7.80379556455714 8.14219051702928 8.16963542176955 7.62228107156964 7.31709844586302 7.54611340666503 7.46737717021022 7.08811544163197 7.35355121974971 7.60683826750565 7.65685799284775 8.0270718125187 0.193154053318048 0.185652183522706 0.189205891844107 0.203347949601147 0.194095488011627 0.192608683221747 0.195381057146262 0.187773985120872 0.192851866878863 0.184703492510490 0.187596984135859 0.183759129973920 0.194324719627468 0.188640280778500 0.194860039462929 0.188438841525432 0.196489584914106 0.202299029421739 0.184684785638416 3 3 + 5145711 5146588 5146152 5145004 5146863 + gene protein_coding_gene FALSE TRUE AT3G15290.1 3-hydroxybutyryl-CoA dehydrogenase, putative similar to AIM1 (ABNORMAL INFLORESCENCE MERISTEM), enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT4G29010.1); similar to 3-hydroxybutyryl-CoA dehydrogenase [Bradyrhizobium sp. BTAi1] (GB:ZP_00861724.1); similar to Os01g0796400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044515.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, C-terminal; (InterPro:IPR006108); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; (InterPro:IPR006176); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase; (InterPro:IPR006180); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) -0.228519201443860 -2.69181189365087 0.0211413489958598 1 2.14193169317418 15.7628819776544 -0.228519201443860 0.0417553337412482
AT3G03340_at 7.91691880726636 7.77103369875467 7.87361310538148 7.79682739018965 7.98817577601136 8.13992510415236 7.43451246620291 7.27880560150856 6.76348076858012 6.82269479713644 7.01335790625333 6.88892184087589 6.84427819685056 7.10886442971724 6.87403355248067 7.02257632021777 7.30613308443604 6.82974932876564 7.03182686300397 0.189161075706638 0.192240899682840 0.197015120377534 0.193844678980474 0.194814441253312 0.200220848705649 0.19281160875416 0.193785618732991 0.207536348019996 0.192631533650752 0.188992397165063 0.188992397165063 0.193992454510387 0.188992397165063 0.201032088408599 0.191749716235986 0.194167110394520 0.196478150089366 0.194300169149501 3 3|0 +|/ 788454 789611 789121.444 786327 790084 + gene protein_coding_gene FALSE TRUE AT3G03340.1 UNE6 (unfertilized embryo sac 6) similar to LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17440.1); similar to RNA-binding protein Luc7-like 2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99834.1); similar to Os03g0843500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051864.1); contains InterPro domain LUC7 related; (InterPro:IPR004882) 0.231319778355031 2.69163334723395 0.0211480642172291 1 2.14165294339736 14.7043048980283 0.231319778355031 0.0472191937807985
AT1G80720_at 2.10428302597912 2.38892738263913 2.49682536387096 2.55874302385668 1.89077901703094 2.38371177548469 3.00075491193882 2.61590022528714 2.54415872758403 2.77583552640419 2.37025538008774 2.43516733150741 2.77247132590570 2.28379267436906 2.82146680356272 2.47153989205089 2.50285805187818 2.51932381736872 3.41587616222539 0.225057523104580 0.220558102059079 0.227874281529044 0.22214793070952 0.224129465794441 0.223783438517134 0.224199816577434 0.233360721839583 0.2268395666027 0.227323262881933 0.221791410917477 0.224414817015764 0.228587089408719 0.226900394076022 0.220558102059079 0.221262279533279 0.231712166751159 0.223106741565262 0.223077206931594 1 1|0 +|/ 30341186 30342135 30341714.7 30341030 30342457 + gene protein_coding_gene FALSE TRUE AT1G80720.1 mitochondrial glycoprotein family protein / MAM33 family protein similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT1G15870.1); similar to Os09g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063903.1); similar to aerobic respiration-related protein [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_566661.1); similar to Os08g0439900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061899.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) -0.292399493606736 -2.69108174156367 0.0211688237540374 1 2.14079177970531 5.14702369825885 -0.292399493606736 0.119389162192186
AT3G06040_at 5.73536412509664 6.03702820733094 4.95695191325977 5.19689822695914 5.59181437083308 5.56436228454508 5.92093250738677 6.2355920827686 5.23723301148944 5.12957468396287 5.28358390581972 5.59436199725332 5.14569566056155 5.13988533075667 6.08163542306077 5.20994962282475 5.16495025396217 5.07004744590074 5.23485621130612 0.209713771697148 0.215253214672249 0.213348161645674 0.215582695281276 0.210627878672389 0.210420008437866 0.211922892689264 0.216254809075859 0.208006559170863 0.206594002114539 0.207204814454875 0.20463952517346 0.205778619386275 0.20463952517346 0.224936631431593 0.205361397563717 0.211794031518598 0.208297708055474 0.208789927861773 3 3 - 1824602 1825038 1824876.455 1824382 1825669 - gene protein_coding_gene FALSE TRUE AT3G06040.1|AT3G06040.2|AT3G06040.3 ribosomal protein L12 family protein similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT1G70190.1); similar to unknown [Solanum tuberosum] (GB:ABA40429.1); contains InterPro domain Ribosomal protein L7/12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) -0.259506731157577 -2.69094533632873 0.0211739604461585 1 2.14057882757499 10.9232771350743 -0.259506731157577 0.08623953363392
AT1G22860_at 5.31136829439623 5.70808489728946 4.96017314173455 5.47470139348388 5.27558440823953 5.38001526443007 5.04752115789988 5.09964787333012 5.41979742079989 5.19477301204928 4.83390788815729 4.63586274878877 4.84728898397894 4.94663502886934 4.68901849708227 4.75533265184602 4.74892448640114 5.10984145188554 5.51181430176306 0.245862227596222 0.24432682039606 0.254150488092824 0.238717492617378 0.242032254788195 0.242319957244836 0.250841300313849 0.243707211903536 0.2422064451253 0.240415498879105 0.236252196768983 0.241678082393212 0.238145394869504 0.238090058783791 0.236252196768983 0.240503751400434 0.248593275095814 0.240499188643065 0.238007119550983 1 1|0 +|/ 8087970 8088797 8088412.1 8083389 8089225 + gene protein_coding_gene FALSE TRUE AT1G22860.1 TGF beta receptor associated protein-related similar to Os05g0104100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054400.1); similar to PREDICTED: similar to Transforming growth factor, beta receptor associated protein 1 [Gallus gallus] (GB:XP_416922.2); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.286823557417416 -2.69068559194892 0.021183745211651 1 2.14017332498817 10.3802935765156 -0.286823557417416 0.114235267615790
AT1G78390_at 1.15675353122715 0.997247824828193 1.24519784529861 1.17923785704674 1.05005333809521 1.09173296306563 1.51784855396248 1.32109504639665 1.54396486165354 1.6181777437468 0.940687323111229 0.934918442756663 0.87339160430172 1.13443883062358 1.25126358426908 1.19755048238101 2.08259079707426 1.36748440036869 1.56904008759119 0.201151203639337 0.195553788118635 0.20485493313865 0.197514848290193 0.211998621944425 0.203070071800646 0.198499694559053 0.200872529720643 0.201502410296449 0.199096935617488 0.204595634880476 0.197586860852457 0.204661659015872 0.197213095226030 0.200432410312793 0.195994410816418 0.198520979534804 0.199578423423291 0.199900982674267 1 1 - 29495820 29496267 29496026.273 29495788 29497768 - gene protein_coding_gene FALSE TRUE AT1G78390.1 NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT4G18350.1); similar to 9-cis-epoxycarotenoid dioxygenase 1 [Citrus sinensis] (GB:AAY89370.1); similar to 9-cis-epoxycarotenoid dioxygenase 1 [Vitis vinifera] (GB:AAR11193.1); similar to 9-cis-epoxycarotenoid dioxygenase 3 [Citrus clementina] (GB:ABC26013.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.230475476390069 -2.69026171054201 0.0211997227740074 1 2.13951158737259 2.59482166037739 -0.230475476390069 0.0458650116698676
AT1G77260_at 8.08384626010257 8.15399689693988 7.72110380624512 7.8160286868402 7.54894018274406 7.78485159657935 8.50067054723223 8.21262543329551 8.18031436243244 8.6277258996189 8.70464789980948 8.91597051905166 8.68153224345551 8.387542522263 8.48868331390013 8.41791170600249 8.16702682748038 8.43358685438919 8.6711001054662 0.129986749292396 0.129986749292396 0.140692085420555 0.134388332986943 0.137144174480208 0.137643243020909 0.129986749292396 0.132550183113916 0.140285441850104 0.136223118252651 0.143225858651294 0.131994189723843 0.136950325393425 0.138777173084230 0.133273991057074 0.134112370629011 0.142410757261037 0.135097947018934 0.138195013718445 1 1|0 -|/ 29028867 29029399 29029167.6 29028666 29031851 - gene protein_coding_gene FALSE TRUE AT1G77260.1 dehydration-responsive protein-related similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G39750.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G06050.1); similar to Os01g0883900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045015.1); similar to Os01g0846600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044791.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.244243884834449 -2.68975352627902 0.0212188937586164 1 2.13871825632159 16.4865876887306 -0.244243884834449 0.0675924197149194
AT3G56680_at 9.92603692077415 9.99194508992665 9.49197354205931 9.369349438062 9.99918732429721 9.7710665093289 9.67762933820734 9.59230249433732 10.0185514942138 9.80959638594834 9.52989932484716 9.80556723706268 9.58800409603088 9.55588069223164 9.85888704457224 9.3836512915689 9.6211591085763 9.1131455944965 9.81656375808766 0.089250182132177 0.0863648740739742 0.0932612261593033 0.0995394075986381 0.0887321818622253 0.0923697927708097 0.089914934643491 0.0884880198425238 0.0923924715495738 0.0878564781176203 0.0903680907227472 0.0872104544437028 0.0863648740739742 0.0914787122047527 0.0904133660718051 0.0863648740739742 0.0944403752210981 0.089267526557624 0.0863648740739742 3 3|0 +|/ 21003526 21004392 21003910.333 21002259 21004656 + gene protein_coding_gene FALSE TRUE AT3G56680.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G40960.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -0.231815252392249 -2.68889634191496 0.0212512695568246 1 2.13738013522432 19.4467337545024 -0.231815252392249 0.0485480282681707
AT4G00955_at 5.51934336038385 5.72357972617827 6.29475179277829 6.3103373004564 6.00225284795487 5.25063321260307 4.96643987081708 4.98102642297174 6.02919082121382 4.7212909014133 5.7848369088317 4.93780243399626 5.41593574858243 6.04481766548198 4.67810141010036 5.65326873873944 5.00916859536537 5.80972680944025 5.64337236510751 0.255182439419342 0.252559569787195 0.261358231427307 0.261663851597585 0.247801135246550 0.261546598618750 0.260031933598047 0.247336875852027 0.257855767751774 0.24875340422477 0.250729018511965 0.247872486005103 0.247472853352939 0.251990500585820 0.253044440052725 0.253881769895981 0.250559386831005 0.25314689125784 0.249264482642735 4 4 + 412379 412925 412596.455 412118 413327 + gene protein_coding_gene FALSE TRUE AT4G00955.1 similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23450.1); similar to WAK-like kinase [Lycopersicon esculentum] (GB:AAS45124.1) 0.309492851466385 2.68872883598004 0.0212576019649981 1 2.13711865291987 11.071708225799 0.309492851466385 0.134838375631556
AT1G28250_at 6.34617574383472 6.48618841238646 5.5028427877921 6.28556762671646 7.77443349552457 6.44609896186425 5.91677279759354 6.32592342628251 5.66072150637126 4.35872647285616 5.49535056134735 6.03920775299339 5.55681543613794 5.73776654434978 5.60313185898278 5.72686363477882 5.58955383702107 5.4242082363465 4.61176979412519 0.252434821491854 0.259057836438397 0.286889665783802 0.260798777838908 0.252434821491854 0.270638555960773 0.255292641236725 0.255961199318068 0.290047962974173 0.259972872926147 0.255066026949669 0.253807785628073 0.252434821491854 0.260030889082401 0.258609558945136 0.252434821491854 0.287413428313742 0.273351002656521 0.255474681727172 1 1|0 +|/ 9874312 9875123 9874609.889 9874234 9875566 + gene protein_coding_gene FALSE TRUE AT1G28250.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84779.1) 0.5015051322886 2.68854237439729 0.0212646531749796 1 2.13682758232635 11.6473428184304 0.5015051322886 0.277111184992425
AT2G31945_at 2.44803824552919 2.58215173344355 3.04442168365994 3.1940142387538 3.83366679093219 3.00442235992162 2.25035320966161 2.21381395230467 2.03912053826522 2.03293182735795 1.91834988939302 1.49376985814429 1.47240367230827 1.98429661414733 1.84519033725413 1.42842372289777 2.31513816086166 1.69480342164139 1.97300918123627 0.233426152969545 0.236953300422264 0.246363094561372 0.238665793172926 0.247472497586259 0.252956656759318 0.229171608401995 0.231404747467612 0.239722271795548 0.228303084663041 0.231980591628077 0.241397116434724 0.236184531375195 0.228303084663041 0.234933095795507 0.235866776650478 0.239151522786649 0.233313341833774 0.233106996642001 2 2 + 13588768 13588997 13588880 13588658 13589203 + gene protein_coding_gene FALSE TRUE AT2G31945.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05575.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38225.1); similar to Os06g0207200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057099.1); similar to Os02g0774200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048273.1) 0.32478421352165 2.68834275603418 0.0212722044910638 1 2.13651597617088 4.71339401437622 0.32478421352165 0.147791702593518
AT1G01010_at 3.65367295541483 3.39082942163405 4.07732052889334 3.94779155666759 3.28215892354618 3.45936273475056 2.2875481031522 3.04284394139985 2.80204357524608 2.11251176222565 2.33803847045881 2.29142958254263 2.46989315586107 2.62969340864158 2.14188289250559 2.27278409759153 3.15280192508992 2.48536186743257 2.37997357329372 0.228732709457770 0.227398458203995 0.224635962781365 0.221096405536094 0.218452497399878 0.223580566962072 0.219401685690305 0.225690004429672 0.229298245335432 0.230313456258824 0.218452497399878 0.219796192499113 0.220199105377664 0.221506745229895 0.22000491156243 0.218452497399878 0.228721833863647 0.218452497399878 0.218452497399878 1 1 + 4861 5591 5141.273 3631 5899 + gene protein_coding_gene FALSE TRUE AT1G01010.1 ANAC001 (Arabidopsis NAC domain containing protein 1); transcription factor similar to ANAC069 (Arabidopsis NAC domain containing protein 69), transcription factor [Arabidopsis thaliana] (TAIR:AT4G01550.1); similar to Os08g0562200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062518.1); similar to putative NAC2 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09612.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.319580434328919 2.68778272730239 0.0212934038846984 1 2.13564177960716 5.84481367665096 0.319580434328919 0.143514126469421
AT3G54070_at 0.861975811004924 1.45932818945855 0.634621680610539 0.465999892918466 0.837480479313123 0.544756859228182 0.770206401878077 0.668544772337849 0.863622978649841 0.306942074752667 0.351263836989279 0.626769813665992 -0.105116191393324 0.403614901216539 0.936594305267659 0.545167451411938 0.0560300948654165 0.564578339691438 0.894516928932341 0.225549570170701 0.224001691906027 0.217746451823468 0.214697671135382 0.216532902599927 0.213002207498213 0.213002207498213 0.218604301767891 0.218115489475207 0.218120224037818 0.215700888736151 0.219381119444807 0.223847824821328 0.215085576839487 0.218813320495915 0.213002207498213 0.216426169279325 0.223114500114008 0.21498280999141 3 3 - 20032308 20032802 20032502.182 20032308 20034581 - gene protein_coding_gene FALSE TRUE AT3G54070.1 ankyrin repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35810.1); similar to Ankyrin [Medicago truncatula] (GB:ABE89653.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.292648453733095 -2.68670031894550 0.0213344368934314 1 2.13395221311792 1.33572600071504 -0.292648453733095 0.120056213223163
AT2G44520_at 6.18496519647668 6.48486501112641 6.50340873241671 6.78675284064497 6.63594872979737 5.81588062658333 6.36908712554807 6.68326374897784 4.69266781832692 4.32939932001382 4.97270469564191 5.53343011685834 4.9938584696086 5.53393007637682 4.80696235235464 5.67672531306957 5.17109710373616 5.09547770020736 4.56471832737115 0.251836431528716 0.254988070927635 0.254269743323721 0.245583378287616 0.247159940120420 0.265036559416484 0.262240331892179 0.246838361052633 0.260201026701632 0.259402021815345 0.249608918220663 0.251254066866686 0.249762186861041 0.256320551298129 0.245583378287616 0.245583378287616 0.287819809485703 0.263056701996069 0.246471585947532 2 2 + 18387947 18388719 18388324.545 18386640 18389018 + gene protein_coding_gene FALSE TRUE AT2G44520.1 COX10 (CYTOCHROME C OXIDASE 10); prenyltransferase similar to Os01g0527700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043230.1); similar to Heme A farnesyltransferase (ISS) [Ostreococcus tauri] (GB:CAL51914.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537); contains InterPro domain Protoheme IX farnesyltransferase; (InterPro:IPR006369) 0.349523600869694 2.68621621422538 0.0213528141816733 1 2.13319658263972 11.3089973599726 0.349523600869694 0.167911403286545
AT3G52590_at 11.6189183236433 11.6707188032304 11.1067422399924 11.1219501732354 11.2034103646057 11.1240187783829 11.4989621640728 11.7423316907050 11.2548233457596 11.5477078006583 11.5545677633808 11.8345591969144 11.3403492119018 11.4131432229968 11.9201616226889 11.2736106799042 11.1925024876089 11.1321632072723 11.4681365254647 0.0894039231341326 0.0863097706136734 0.0928524204187564 0.091143047581938 0.0863097706136734 0.09370701257891 0.0886491770052308 0.088122883939003 0.100362990605645 0.0863097706136734 0.0910674750250535 0.089012725191925 0.0863097706136734 0.089454626506661 0.090881405267773 0.0890609993352081 0.101365317788129 0.0984898170276933 0.087676088363164 3 3|0 +|/ 19516652 19517503 19516998.857 19516607 19517910 + gene protein_coding_gene FALSE TRUE AT3G52590.1 UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 60S ribosomal protein L40 (CEP52) (UBQ2) [Arabidopsis Thaliana] (GB:P19232;GB:Q9S7X3); similar to ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) [Arabidopsis thaliana] (TAIR:AT2G36170.1); similar to ubiquitin fusion protein [Arachis hypogaea] (GB:AAZ20285.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein L40e; (InterPro:IPR001975) -0.229813036451390 -2.68614916593598 0.0213553606651877 1 2.13309192934279 22.8264755995890 -0.229813036451390 0.0452749901014195
AT3G55510_at 3.90109689189937 4.29247081975476 3.97188599087555 3.52332629835662 3.37804711255095 3.39341692000381 4.2651289817904 4.58453042285595 1.30538984884231 2.69713576698335 2.33714775570119 2.60342742554584 2.35843538760328 2.02395840845355 2.55771316259781 2.33251501508196 2.54784507595429 1.47469096670965 2.48860686623555 0.223810743015821 0.230551087189099 0.231110138222544 0.223340042829050 0.221727224070022 0.228475790231549 0.232577817290646 0.236765502192357 0.237032990507682 0.221727224070022 0.229919716947602 0.223307226332789 0.223575431068727 0.221727224070022 0.233260645133148 0.223990340300156 0.22882728161808 0.233755998866809 0.221727224070022 3 3|0 +|/ 20592307 20593023 20592608.8 20589961 20593384 + gene protein_coding_gene FALSE TRUE AT3G55510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18220.1); similar to Nucleolar complex protein 2 homolog (Protein NOC2 homolog) (GB:Q8LNU5); similar to Os12g0163200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066228.1); contains InterPro domain Protein of unknown function UPF0120; (InterPro:IPR005343) -0.289190938138089 -2.68585521209053 0.0213665285406892 1 2.13263311063153 6.13532666829076 -0.289190938138089 0.116941022995829
AT1G31335_at 4.49265856858094 4.65163479691275 4.49523464158372 4.37294615533147 4.85600502118691 5.28202088982138 6.17856895458858 6.40013264067332 5.58852762674061 5.15950362329446 5.63384409973756 5.57901628277201 5.26173478460725 5.1874908388798 5.7220837132113 5.02544754042748 5.48059539069897 5.33162760931777 4.99714986978258 0.198807520392214 0.207951746083188 0.205770419832681 0.206276839412463 0.199241818199354 0.200353959341215 0.196403832971063 0.214467254594743 0.199967864349210 0.201802683816107 0.200773747526483 0.197516052372147 0.203617301985004 0.198808913048139 0.196973982136904 0.196403832971063 0.202529365719056 0.207289244898290 0.199942963875884 1 1 - 11217172 11217285 11217205.727 11216895 11217374 - gene protein_coding_gene FALSE TRUE AT1G31335.1 similar to Os03g0780200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051448.1) -0.262430368678696 -2.68577938723659 0.0213694102130545 1 2.13251476009290 10.4167120781161 -0.262430368678696 0.0900562740328586
AT2G40620_at 1.87714472137122 2.16139882101997 2.33631896618638 2.20416614342240 2.87942995896667 2.50770387727125 2.16167850595605 1.86306028806708 3.04241096094254 2.28258967417446 3.08938567488195 2.77518551083308 2.68312086012014 2.71653075386216 3.08832330993965 2.38991597008032 2.24973946431029 2.9694733139499 2.68548672206372 0.228607698783649 0.209090922112291 0.215787237016517 0.216858473120564 0.20679310826517 0.216951200896953 0.212421726546100 0.218533219379249 0.223044700785540 0.212242636113451 0.216379407513899 0.209478236230067 0.211794640665932 0.208910267996884 0.205696344933799 0.205534058809037 0.213031096637394 0.207445618391126 0.211081099005868 2 2|0 -|/ 16961939 16962586 16962158.9 16961619 16964056 - gene protein_coding_gene FALSE TRUE AT2G40620.1 bZIP transcription factor family protein similar to bZIP transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G06850.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE94130.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.270565528605856 2.68547426776454 0.0213810099683563 1 2.13203852087224 4.95654856510301 0.270565528605856 0.0987500743458762
AT1G62290_at 2.30102506879560 2.43580312582192 2.18980376724934 2.25391142714218 2.43232464226538 2.91504899515494 3.60004507112395 4.13711894781093 2.37031104412133 3.50860605023631 2.82981181420335 1.68116561083209 3.08355555291727 3.08430314407231 2.95644226275589 2.53700487050361 3.15362517761688 3.09120870110229 2.31987669911635 0.228748289500194 0.22260302857814 0.221941267447113 0.223521433944578 0.225522079508143 0.222480728844191 0.226760408023276 0.226766905380797 0.250652191343584 0.224550342453751 0.223460571620180 0.228935555356576 0.223524260693959 0.221845812261943 0.222368456035138 0.230192396378043 0.231720480617717 0.222510144886868 0.230828881571159 1 1|0 -|/ 23013782 23014580 23014166.2 23013576 23017193 - gene protein_coding_gene FALSE TRUE AT1G62290.1|AT1G62290.2 aspartyl protease family protein|pepsin A similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G11910.1); similar to aspartic protease (GB:AAB03108.1); similar to aspartic proteinase [Theobroma cacao] (GB:CAC86004.1); similar to aspartic proteinase 1 [Glycine max] (GB:BAB62890.1); contains InterPro domain Saposin-like; (InterPro:IPR011001); contains InterPro domain Saposin B subdomain; (InterPro:IPR008140); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Saposin B; (InterPro:IPR008139); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Saposin-like type B, 2; (InterPro:IPR008138); contains InterPro domain Peptidase aspartic, active site; (InterPro:IPR001969); contains InterPro domain Saposin; (InterPro:IPR008373); contains InterPro domain Saposin-like type B, 1; (InterPro:IPR007856) -0.300758734088003 -2.68446189821594 0.0214195420554077 1 2.13045842859349 5.55067058379142 -0.300758734088003 0.127609019628367
AT3G05570_at 4.71088036850275 5.2412760760377 5.26182602107717 5.27474420878207 5.42220462015533 4.92488461762936 4.46961967553765 4.25509912528392 4.3729500682167 4.4882893247575 4.8202162971053 4.4359431483441 4.455724540566 4.69488138939508 4.26200777743224 5.12170660500651 4.01574383915339 4.61271836626219 4.62225316989816 0.220372535870301 0.219591941965977 0.225536322585558 0.221000764550316 0.220149054532509 0.239622133408576 0.220938848947908 0.223792499281471 0.220561665677055 0.224469658326455 0.218486823840157 0.21726424729573 0.215901427430491 0.222759738106279 0.215901427430491 0.222791870995362 0.239821713036298 0.218310511363577 0.220580090740508 3 3 - 1616279 1616617 1616437.7 1616108 1617345 - gene protein_coding_gene FALSE TRUE AT3G05570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39235.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05323.1); similar to Os03g0724500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051122.1) 0.304783140010566 2.6840382268327 0.0214356879613645 1 2.12979718793030 9.46849947230852 0.304783140010566 0.131206108550937
AT1G68410_at 5.07657205193717 4.84464825172266 5.33330247322415 5.44885742583714 5.47003935429339 4.91717398143467 5.77162707567441 5.73589199204037 5.47280625810315 5.58082247358610 6.81192528270412 6.12814281644356 6.37445356761442 6.35355907169102 6.3602193095415 6.1073511534958 5.59538063833527 5.98223685348109 5.72984922885068 0.169253224906691 0.176813646180315 0.166050938647462 0.166331821751126 0.162627573542525 0.179816538840548 0.167539943288295 0.167779834716623 0.179103715643419 0.168875856189227 0.165422850250370 0.167246568709913 0.163064298246974 0.183441124447903 0.164595698355429 0.160800843740097 0.169320887399352 0.173720940652081 0.165134128767343 1 1 - 25653989 25654613 25654290.273 25653662 25656682 - gene protein_coding_gene FALSE TRUE AT1G68410.1|AT1G68410.2 protein phosphatase 2C-related / PP2C-related|protein phosphatase type 2C similar to protein phosphatase 2C-related / PP2C-related [Arabidopsis thaliana] (TAIR:AT1G09160.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85667.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.277412199501859 2.68380540393235 0.0214445658633154 1 2.12943381699994 11.2290896958588 0.277412199501859 0.105843649409590
AT4G02430_at 5.22972089653193 4.38168968753825 5.37344622557587 5.06344150153305 5.37733395825347 5.24651408195115 4.93143076526592 4.28404117316507 4.60743987129729 4.9299003553618 4.87523786400929 4.99234050464802 5.04233421850313 5.07316839738179 4.65009040626082 5.72869681463772 5.36192908023582 4.91517701350293 5.08129288821151 0.237519101235659 0.232289087308063 0.232539240637419 0.227286246668465 0.233946223183605 0.227819017549521 0.228763464691132 0.232466814206379 0.237868395006795 0.23820079233885 0.238900446403856 0.233129073578643 0.236320728945723 0.250805122976049 0.226833727355942 0.231506360875448 0.236474049408466 0.24273418434253 0.226833727355942 4 4|0 +|/ 1069919 1070852 1070538.375 1068974 1072215 + gene protein_coding_gene FALSE TRUE AT4G02430.1|AT4G02430.2 pre-mRNA splicing factor, putative / SR1 protein, putative similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to ribonucleoprotein (GB:AAA32856.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.2); similar to ribonucleoprotein (GB:AAA32856.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.382728696821834 2.6833310103768 0.0214626665154248 1 2.12869343327859 9.962327032404 0.382728696821834 0.193596043133128
AT3G52140_at 7.4237001179495 7.25579830804071 7.30350012365166 7.16542209743183 7.0036127677538 6.89614408358888 7.16763637337081 7.40019576067724 7.04287067326155 7.12129330730177 6.58453423394607 6.88435166068768 7.07694673694978 6.52986948566451 7.08675134822197 7.16523671042235 7.10987410246058 6.69822375256553 7.27437411749845 0.141424251197543 0.146559650215931 0.142789398137026 0.144939371846253 0.141118067935908 0.148551745301297 0.141364586335887 0.141276037698954 0.150429384817019 0.142464366038904 0.151773509933084 0.152344883009191 0.143417004608144 0.151915963781188 0.144132665307870 0.148512450507784 0.147152493198919 0.158630922651867 0.147352071112125 3 3|0 +|/ 19351530 19352207 19351930.8 19343907 19352635 + gene protein_coding_gene FALSE TRUE AT3G52140.1 tetratricopeptide repeat (TPR)-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G15290.1); similar to Putative eukaryotic translation initiation factor 3 subunit (eIF-3) (GB:O15818); similar to Os02g0717400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047932.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.236934367029404 -2.68122172539022 0.0215433305831232 1 2.12540166048176 14.2210776390008 -0.236934367029404 0.0581448079298559
AT1G21270_at 9.62001631955949 9.93771089126684 9.275928509931 9.31666869423491 8.79805283874894 8.26258846516163 8.36476742225292 8.1436361978822 10.0661592562945 8.80285193049121 9.15342190194894 9.40577653150036 8.26381620106203 9.44425641230526 8.42075957904603 8.65515437871704 7.71219253949253 9.21864919222135 8.89035648763704 0.192314005700970 0.190991035563143 0.197907517232492 0.198717193928492 0.199026422139251 0.201656725234732 0.190991035563143 0.196467260744536 0.204710827974407 0.205379657577962 0.192120210948323 0.195049115971041 0.197578495336267 0.193103235575094 0.197189744935308 0.198387277387408 0.203510046602867 0.193129263975683 0.199898262094165 1 1 + 7446771 7447233 7447033.727 7444919 7447537 + gene protein_coding_gene FALSE TRUE AT1G21270.1 WAK2 (wall-associated kinase 2); protein serine/threonine kinase cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. Identical to Wall-associated receptor kinase 2 precursor (EC 2.7.11.-) (WAK2) [Arabidopsis Thaliana] (GB:Q9LMP1;GB:Q9XGN2); similar to WAK1 (CELL WALL-ASSOCIATED KINASE), kinase [Arabidopsis thaliana] (TAIR:AT1G21250.1); similar to WAK5 (WALL ASSOCIATED KINASE 5), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21230.1); similar to WAK4 (WALL ASSOCIATED KINASE 4), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21210.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) -0.286046148412728 -2.68019512093223 0.0215826990315384 1 2.12379963624113 17.9836091174685 -0.286046148412728 0.114557837111274
AT2G02870_at 6.81836482207081 6.17083321937222 7.09282834695191 6.60130090348986 6.61690386498775 6.58265605518973 6.70747010313487 6.01780588160324 5.70105505864416 6.13682110598848 6.811346444807 6.68566527137479 6.11563641260664 6.79396092542079 6.16797640149205 6.4320477719825 6.52739331251936 5.96431853368359 6.13660112853082 0.154148307191877 0.157866230732790 0.166226799579748 0.154587492798815 0.162304355578830 0.157127296727069 0.152029075007401 0.157156500688304 0.166463200107523 0.162121421565873 0.152968438537113 0.152076470263710 0.162319756948222 0.152990692349146 0.162936876118082 0.163281097556423 0.152679080812556 0.163481008054587 0.152705231400431 2 2 + 839331 839734 839549.273 837811 840152 + gene protein_coding_gene FALSE TRUE AT2G02870.1|AT2G02870.2|AT2G02870.3 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G14330.1); similar to kelch repeat-containing F-box family protein, putative [Solanum demissum] (GB:AAT40540.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch motif; (InterPro:IPR006651); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.370302244645441 2.68002759377385 0.0215891301634615 1 2.12353821540524 12.7904131822452 0.370302244645441 0.184585823208318
AT1G70060_at 6.20286081379816 6.2733493220443 6.92782961291967 6.46153658770881 6.99326052799892 6.8240766025737 7.06520557927984 5.26208783020375 3.81010898078921 5.64029174065587 6.32222243843165 5.39437126626808 5.7718813219997 5.4194076678755 4.91226422936716 5.95311386615507 6.25582842547404 4.82055195126025 5.75499776292333 0.266367387841392 0.264099466581319 0.264039326293138 0.265056158996994 0.264039326293138 0.271577566616090 0.264387915401378 0.279167927952889 0.292766348109994 0.270379297538954 0.273871078855978 0.264325191849196 0.267528051433303 0.27138820473875 0.26991911384009 0.272144705853160 0.281877504770043 0.298960343473042 0.269584759801197 1 1 + 26392482 26393206 26392765.6 26387452 26393579 + gene protein_coding_gene FALSE TRUE AT1G70060.1 paired amphipathic helix repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01320.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to transcriptional repressor protein-related [Musa balbisiana] (GB:ABF70137.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE86951.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.569269465433279 2.67990650613945 0.0215937797299827 1 2.12334926313341 11.8386115132209 0.569269465433279 0.323859892374554
AT1G20650_at 9.77176662776393 9.81785699562742 9.6411867482121 9.5400470354019 10.3482939256529 10.1000844459858 10.4720730761056 10.3668456212708 10.1654405206692 10.5900110914339 10.3535762037101 10.3935155189886 10.4550582619427 10.2375300852528 10.1212148823942 10.2361780005987 9.85767923397634 10.0496250703219 10.6771317683866 0.0721537057003651 0.0677715175369308 0.0707751342794474 0.0681678896458424 0.0667113060551174 0.0784369381563112 0.0667113060551174 0.0714442997899182 0.0761678403625438 0.069185829176021 0.0716253011797914 0.0670999396286297 0.067434248971499 0.0679941322215895 0.0708419304402654 0.0667113060551174 0.0732337121122789 0.07019748852166 0.0709647825507985 1 1|0 -|/ 7158413 7159048 7158644.5 7158234 7160516 - gene protein_coding_gene FALSE TRUE AT1G20650.1 protein kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G76370.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT58829.1); similar to Os01g0936100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045326.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.232106588863562 -2.67973438662356 0.0216003905452143 1 2.12308067937842 20.3525567848249 -0.232106588863562 0.0504638576187716
AT1G71900_at 5.44993322643471 5.53356273286496 5.85892700838652 5.85694093715891 6.15838597279341 5.67913820600057 6.12607457053943 5.99918338630143 5.10458883801922 5.31224548969435 5.76055468442194 5.81391003195662 5.13712251577531 5.57959236264042 5.86527800786485 5.75932876836649 5.43206951708656 5.41414364535259 5.14780266336042 0.207577523796677 0.202614822939346 0.210547116796567 0.206755661463379 0.212232962314276 0.219315487402338 0.206377711723619 0.210795721635984 0.211008062897497 0.202330683422459 0.213429847588327 0.202572188884947 0.203688437053785 0.215753518645177 0.204321311508169 0.207193650582885 0.204376175896854 0.210427672893431 0.208993791561230 1 1|0 +|/ 27066538 27067668 27066934 27065148 27068158 + gene protein_coding_gene FALSE TRUE AT1G71900.1 similar to permease-related [Arabidopsis thaliana] (TAIR:AT1G34470.1); similar to Os01g0882300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045007.1); similar to Non-imprinted in Prader-Willi/Angelman syndrome re (GB:ABA91886.2); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.259098581687413 2.67968347923234 0.0216023461951198 1 2.12300124135778 11.2244993910805 0.259098581687413 0.087006686532682
AT3G17890_at 2.43850013036426 2.62287978501298 2.7579196465277 2.7947603439374 3.02951136392862 2.99379436269904 2.42583179291238 2.70024303052249 2.94714059323719 2.73156968337756 3.07235345701861 3.23397603188483 3.23234610881652 2.74389472019189 3.43643794627643 3.03314657010584 3.30560842760906 2.92365337080172 3.31124780911502 0.168740603873101 0.177682711310288 0.172275403355989 0.171921807768924 0.170017642514751 0.172098754684981 0.166058695108469 0.162347864875911 0.165827097424018 0.166337562569267 0.161420874483037 0.161550781038786 0.161412494591837 0.167968505106804 0.164950718413601 0.161469134413211 0.165158610178418 0.166672485636031 0.163019707749491 3 3 + 6127239 6127488 6127364.182 6127047 6127880 + gene protein_coding_gene FALSE TRUE AT3G17890.1 unknown protein 0.236578564207512 2.67900816267393 0.0216283056556512 1 2.12194746541954 5.78009494415379 0.236578564207512 0.0578971507215306
AT1G11270_at 2.94789510536257 3.14401785874018 3.42859525663619 3.42778893411084 3.68606721784626 3.73028856234177 3.02888317824516 2.43218876527766 3.15489586324508 3.49401085805873 2.91956392371606 2.82830771154851 3.22840602850505 2.87134535820297 2.9576063189789 3.11922892826593 3.61278484527225 3.36255724060089 3.04811599612366 0.199412415516819 0.203347990482460 0.211490134657748 0.201089326556790 0.211412742549247 0.204845131988443 0.204413994226352 0.199412415516819 0.214524286421180 0.205781738725166 0.199412415516819 0.206091346736664 0.214108650507287 0.212779651708371 0.206235360005690 0.199412415516819 0.206966435074585 0.201422358906738 0.214775559471732 1 1 - 3785756 3786280 3786048.273 3780429 3786990 - gene protein_coding_gene FALSE TRUE AT1G11270.1|AT1G11270.2|AT1G11270.3 F-box family protein similar to S locus F-box-related / SLF-related [Arabidopsis thaliana] (TAIR:AT2G34280.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527)|similar to S locus F-box-related / SLF-related [Arabidopsis thaliana] (TAIR:AT2G34280.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.280036452202269 2.6784784628926 0.0216486891795012 1 2.12112093365644 6.40062358491781 0.280036452202269 0.108964612765912
AT2G32250_at 5.48813855006993 4.7186250142777 5.84626450977294 5.13244370177135 5.8336182237665 5.0434535376356 5.05132226723134 4.67731306310425 5.04701481817996 4.8972757863603 5.41624473462972 5.98386860656619 5.10126839733063 5.2492449489114 4.92093160182974 5.39395493309959 5.51281958987968 4.6222572174643 4.67542354715512 0.199226298758043 0.191366113835636 0.19289744236565 0.189584132048641 0.194666120746532 0.189584132048641 0.195752630953279 0.191964151838864 0.202342460216537 0.192996931421350 0.191418419636624 0.194478603329717 0.190216583761299 0.192457985103383 0.202352945587919 0.191553796126727 0.199019281812856 0.197054535634553 0.19923288728689 2 2 + 13702114 13702493 13702296.9 13700182 13704036 + gene protein_coding_gene FALSE TRUE AT2G32250.1|AT2G32250.2|AT2G32250.3 FRS2 (FAR1-RELATED SEQUENCE 2); zinc ion binding similar to FHY3 (far-red elongated hypocotyls 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G22170.1); similar to transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:ABA95414.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.440965486357284 2.67825972860165 0.0216571119076366 1 2.12077963097226 10.2980532605932 0.440965486357284 0.236391298972928
AT1G45130_at 4.53686899304348 4.57695964832192 2.94114299300534 2.92604062442647 3.52713472145749 3.29031225661261 4.17587939884996 3.9114505731346 5.03106437893517 5.13707503994955 6.32432859745427 6.73441051944029 5.6456906559787 6.23159718958897 6.85643956533 5.26898275181423 4.90947540007553 5.93416891416503 5.84339120358867 0.233399264538862 0.230320830564361 0.232251490404080 0.234270252095403 0.230382867084177 0.240191525568337 0.236723735862999 0.227965184980343 0.232351501698718 0.230338022396686 0.231774374736944 0.226810720146302 0.226810720146302 0.228374036803213 0.237618589123801 0.230180904620442 0.235018450649996 0.231722047092445 0.227748964122739 1 1|0 +|/ 17070548 17071447 17071000.75 17067692 17071702 + gene protein_coding_gene FALSE TRUE AT1G45130.1 beta-galactosidase, putative / lactase, putative similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Cicer arietinum] (GB:CAA10128.1); similar to putative beta-galactosidase BG1 [Vitis vinifera] (GB:AAK81874.1); similar to beta galactosidase [Vigna radiata] (GB:AAF67342.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.239086089694465 -2.67749659048595 0.021686523251394 1 2.11958889115729 9.39838043780082 -0.239086089694465 0.0618758943089865
AT1G50250_at 10.9499329593947 10.9659295407118 11.0347772136452 11.2106576552986 10.9719912053575 10.880640122917 11.7965111240449 11.7973968989927 11.6652803754117 11.5702390481944 11.5684715120831 11.3790904898669 11.2828599876356 11.5060529397043 11.2244321597861 11.7899525427028 11.4176995781423 11.5884366310854 11.4587184012370 0.0874441637779089 0.0864800085315161 0.0917231910636894 0.0873142391839314 0.085869989244809 0.0918588677169093 0.0866947321949975 0.0872333473320338 0.0909708480621422 0.0891940955994865 0.0901278393678001 0.0866138892672277 0.0879841013209906 0.0877027966984822 0.0895087539240947 0.0880584655753532 0.0985868930809323 0.0859101101470436 0.0857047433863193 1 1 - 18618084 18618814 18618480 18617877 18620731 - gene protein_coding_gene FALSE TRUE AT1G50250.1 FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. Identical to Cell division protease ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) (FTSH1) [Arabidopsis Thaliana] (GB:Q39102;GB:Q9SX43); similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to Cell division protease ftsH homolog, chloroplast precursor (GB:Q9BAE0); similar to Cell division protease ftsH homolog, chloroplast precursor (GB:Q39444); similar to Cell division protease ftsH homolog, chloroplast precursor (DS9) (GB:O82150); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.224023771485004 -2.67733850718432 0.0216926207294652 1 2.11934223544616 22.7181648009154 -0.224023771485004 0.0344094407069230
AT4G08480_at 4.54413764658158 5.26199472264984 4.89391507902936 4.95017343383812 5.32069154797568 4.84756249187914 3.69617122706018 3.53984197546519 3.64367630950490 2.73787811581741 2.96903819354378 2.85598786335172 3.42536306262062 3.44874039145327 2.73450903389626 3.49481150548747 3.00531405506945 3.00774558043924 3.23167741814382 0.222805561528976 0.223718781412674 0.232988054621122 0.223343003188656 0.22186902698009 0.22468858646229 0.222298399800448 0.221246085976521 0.223848915568474 0.223229988081671 0.218474329706997 0.225436925687073 0.218474329706997 0.223220271549600 0.222926968714974 0.218474329706997 0.221053415108089 0.226739890433399 0.224839462711689 4 4|0 -|/ 5388252 5389447 5388824.7 5387649 5391504 - gene protein_coding_gene FALSE TRUE AT4G08480.1 MAPKKK9 (Mitogen-activated protein kinase kinase kinase 9); kinase member of MEKK subfamily similar to MEKK1 (MYTOGEN ACTIVATED PROTEIN KINASE KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G08500.1); similar to MAP3K beta 1 protein kinase [Brassica napus] (GB:CAA08997.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.327913670742696 2.67672578042633 0.0217162704546904 1 2.11838622012174 7.7928606781706 0.327913670742696 0.151536383590968
AT2G28370_at 7.80017765069755 7.81831020528548 8.01051866770448 8.32927005350915 8.51781192575575 8.41664885748311 7.56516202323557 8.26844916380753 8.07398679955732 7.7355793595064 8.15445167570275 7.78506965398883 8.24941568022284 8.09674239251082 7.90042115494325 8.16091935783892 8.0020160872073 7.86582336141333 7.78952036767099 0.156920738662275 0.152297384680616 0.151830354693084 0.153185478330023 0.155597525542001 0.16479388501365 0.149178316691588 0.152900163350501 0.158451051920236 0.149558066984072 0.146542616124623 0.146056321608353 0.149180362355938 0.152628834457906 0.151193601687333 0.146904976753033 0.162442305737514 0.154612250250102 0.154324026556650 2 2 + 12139174 12140485 12139901.727 12138631 12140781 + gene protein_coding_gene FALSE TRUE AT2G28370.1 similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT2G37200.1); similar to unknown [Solanum tuberosum] (GB:ABB16987.1); similar to Os03g0206600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049320.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.308016430128430 2.67626068507769 0.0217342390323899 1 2.11766056550939 16.0374033664632 0.308016430128430 0.134802585649886
AT1G23390_at 11.9365278831438 12.1003765512586 11.8023829778050 11.867946405633 12.0523643336536 11.9790763991041 11.9928808468970 12.0109120344327 11.8221231992561 12.1627346816893 11.6556038881397 11.4541821061591 11.9275728777349 11.8125101051689 11.1108191811204 11.8645385775889 12.0414769626753 11.5971096396897 12.1504245515415 0.0820477459503913 0.0820477459503913 0.0820477459503913 0.0820477459503913 0.084189907446681 0.0847347127725043 0.0844461399156234 0.0842931456214748 0.0914739544588302 0.0839237760232913 0.0847200990342136 0.0820477459503913 0.0820477459503913 0.0855034259119461 0.086069318942052 0.0831635136312587 0.0846272969484575 0.0874421959056054 0.0856007238791295 1 1 - 8309515 8309998 8309753.727 8309101 8310638 - gene protein_coding_gene FALSE TRUE AT1G23390.1 kelch repeat-containing F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24760.1); similar to Os09g0292900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062790.1); similar to kelch repeat-containing F-box-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19847.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.223424638380915 -2.67585273192494 0.0217500120970255 1 2.11702407767671 23.8318438347144 -0.223424638380915 0.0332162161208146
AT3G26020_at 6.53425053178815 7.14590419775477 6.8525102285484 7.0084301213042 7.59835716051863 7.1100351201558 7.19092726797806 7.01753271798095 6.50182242587024 6.29872951089874 7.40625182747896 6.94179008098692 6.72829334149116 6.87777273727516 6.63006343130832 6.94891646100835 6.59816131978665 6.73299337202609 6.39092683135066 0.212499630003038 0.219079199819324 0.215204667551786 0.221205631758524 0.216385662838614 0.224656578237649 0.214643375837006 0.215415722566967 0.223917418677447 0.223524653267504 0.212144805921796 0.217290803694249 0.212966436281635 0.236223871872597 0.210377747193097 0.217341722022387 0.228709244683866 0.221745873228810 0.211785775389599 3 3 + 9516538 9517677 9516935.909 9514933 9518200 + gene protein_coding_gene FALSE TRUE AT3G26020.1|AT3G26020.2 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative|protein phosphatase type 2A regulator Identical to Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform (PP2A, B' subunit, eta isoform) (AtB' eta) (B'ETA) [Arabidopsis Thaliana] (GB:Q9LU89); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT3G21650.1); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) [Arabidopsis thaliana] (TAIR:AT4G15415.1); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os04g0485100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053130.1); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) 0.315525105401632 2.67541302875847 0.0217670254433444 1 2.11633806604936 13.6848383736503 0.315525105401632 0.141329126149322
AT2G28540_at 4.9027496707303 4.98059886714173 5.21939273105549 5.03678352915623 5.64292565661165 5.18796659268637 5.18234073842033 4.93058527889193 4.18746167221555 3.8899698141869 4.14101239826013 4.42220988100991 4.33922525114725 4.56239000459574 4.15433221683853 4.68489840652856 4.55871325988552 4.25123767911319 4.30520294413376 0.154206879836625 0.151885677025579 0.153800474866695 0.157096788899866 0.155641021608086 0.164628417274340 0.153740097049284 0.153553926473095 0.154918203531295 0.153461444774392 0.153386104790567 0.153672181202265 0.154393004605380 0.152200829895301 0.156570266203533 0.151993557222031 0.154737644965738 0.154431269298326 0.158200370712914 2 2|0 +|/ 12226367 12230623 12228689.55 12225122 12230905 + gene protein_coding_gene FALSE TRUE AT2G28540.1|AT2G28540.2 nucleic acid binding / nucleotide binding / protein binding / zinc ion binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G45630.1); similar to RNA-binding re (GB:ABE87889.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.267203032787489 2.67518246824182 0.0217759517448027 1 2.11597835768077 9.3938164817623 0.267203032787489 0.0963178137915832
AT4G05460_at 5.93135347781959 5.97541883916225 5.78449828056267 5.83988136348983 6.1457150397531 6.23502419016855 4.74930023204392 5.46337482922015 4.17842337822755 4.76540640033318 4.90857622472132 5.03045134674447 4.93399620801082 4.7339981653514 4.57422081343229 5.02766170769808 5.08082320534013 4.14404266111122 5.10164661721734 0.231337759955961 0.232182668805963 0.230234745606053 0.232205375841922 0.23655628773229 0.233792091975931 0.228780038423564 0.231582157219276 0.244426458244557 0.229603209014312 0.239842009662288 0.237559641272167 0.234240302406265 0.23678250654959 0.253858576881370 0.23091228648383 0.231850891393077 0.237902060598049 0.232774822482113 4 4 - 2761113 2762058 2761393.545 2760878 2762442 - gene protein_coding_gene FALSE TRUE AT4G05460.1 F-box family protein (FBL20) similar to F-box family protein (FBL22) [Arabidopsis thaliana] (TAIR:AT4G05490.1); similar to Os02g0317300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046671.1); similar to Os08g0193900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061182.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.296906850111961 2.6746595722952 0.0217962094476603 1 2.11516257625778 10.5085941599328 0.296906850111961 0.125137513018895
AT4G37800_at 8.39990186983979 8.93832017314873 8.32493326361505 8.7180952612148 9.14360064135725 9.04255501675485 11.0893231850308 11.2254647803585 11.1784454208074 11.4085167175669 12.0153279520543 12.1217524866885 11.5221147039976 11.6594179648870 11.9848238674872 11.5624147163027 10.8090553904089 12.0689894417229 10.9902876834682 0.127099803504327 0.120759728811099 0.126790833733284 0.117947078925283 0.115649386935981 0.116704711942394 0.111894755586925 0.114453231417898 0.120891189621727 0.113371379273822 0.117308019531823 0.111871530520504 0.112100402432878 0.111871530520504 0.11774197054387 0.111871530520504 0.116437176465804 0.112346843123374 0.112302034118507 4 4|0 -|/ 17775703 17776814 17776133 17775468 17777391 - gene protein_coding_gene FALSE TRUE AT4G37800.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) (XTH7) [Arabidopsis Thaliana] (GB:Q8LER3;GB:Q9T067); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT5G65730.1); similar to endo-xyloglucan transferase [Gossypium hirsutum] (GB:BAA21107.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.290192999098090 -2.67418879408572 0.0218144640118830 1 2.11442812065079 20.8154761102772 -0.290192999098090 0.119045431258258
AT1G22335_at 3.00678995781295 3.65365821179626 1.67458335557978 2.23459703975085 2.01415229905206 2.40627180496301 3.03888581543265 3.15286633690730 4.99852209418249 4.29140350264922 6.3380204842949 6.3006095417454 5.4905737336704 5.35988951463177 5.85348499410169 4.92955265197382 3.08078538911735 4.58459743615343 5.10323449319289 0.282165920200783 0.275757971957886 0.282627397058789 0.297622866037172 0.290782747612251 0.294680379442661 0.277917801380118 0.278184924627485 0.274955851712446 0.275351799659079 0.280517648157659 0.274955851712446 0.276654167125184 0.28229456529344 0.278614333882539 0.274955851712446 0.281389548222484 0.274955851712446 0.274955851712446 1 1|0 +|/ 7888319 7889206 7888802.9 7888300 7889230 + gene protein_coding_gene FALSE TRUE AT1G22335.1 similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G78260.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF97972.1) -0.343089883723985 -2.67410281027951 0.0218177996950455 1 2.11429397993359 7.6676802267715 -0.343089883723985 0.164064869051231
AT3G59110_at 7.12213705004886 7.43119471175659 6.30353666043364 6.45495336412264 6.96000081064753 6.81879184665536 7.31518571624392 7.46915411302942 7.38093639469778 7.13083509592552 7.58760852182722 7.6304994649831 7.51719621020282 7.75831057213335 7.64572856862637 7.26396290690845 7.03130857263967 7.60097832787968 7.36737250671422 0.186730467505349 0.185681073004569 0.187903772187371 0.190484813873907 0.189270793684279 0.19845465663104 0.185681073004569 0.188195341503808 0.18824041152426 0.187695254261598 0.189484089870651 0.191623507624472 0.192147898787450 0.19617565567021 0.188210566274608 0.185681073004569 0.186552417657891 0.186614411333058 0.189245126768075 3 3|0 +|/ 21867970 21868773 21868327.444 21865696 21869181 + gene protein_coding_gene FALSE TRUE AT3G59110.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G42960.1); similar to protein kinase family protein [Musa acuminata] (GB:ABF69953.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAL58279.1); similar to Os10g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064960.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.244348041633665 -2.67393591050453 0.0218242759007175 1 2.11403360610630 14.3831178552485 -0.244348041633665 0.0696724814547575
AT4G39630_at 1.46841512744125 1.99718523760801 1.37606858212295 1.7028470394607 1.10567863701142 1.45764492379384 1.52360827970272 2.06902172976929 2.21611808581778 2.03373496408104 1.24289948858280 1.39245608124057 1.78792099489558 1.50637384420679 1.47366657080891 1.56663324847979 1.71865233663274 2.06824442411190 1.46649171757714 0.229179887970186 0.232296897335747 0.233961045838200 0.232176299653712 0.229179887970186 0.234111237068841 0.231566282475287 0.231444703834358 0.244061488690840 0.234545609752853 0.229179887970186 0.229179887970186 0.229179887970186 0.232434718779309 0.232339392048496 0.231107742783022 0.240137983828258 0.229179887970186 0.240068219843752 4 4|0 -|/ 18397898 18398977 18398487.778 18397585 18399381 - gene protein_coding_gene FALSE TRUE AT4G39630.1 similar to Os08g0290400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061462.1) -0.332420090119264 -2.67363687263778 0.0218358842197857 1 2.11356709351588 3.33758575933638 -0.332420090119264 0.155531581847005
AT3G18930_at 3.96573594416028 4.57425153320929 3.73757484381712 3.60951611808681 3.79815847774691 3.86602147473300 2.32221259208773 2.78635685472907 2.73158258219604 2.78196425784687 2.91745789347426 3.2871209598863 2.79770377825647 3.0193127801527 3.04002776420514 2.75620442813532 2.90409636854214 3.06620222092642 2.58300124357414 0.164596823667902 0.165158094477145 0.159986396108199 0.158486277808957 0.162095092211828 0.160743825871203 0.157616525081369 0.159491844999453 0.159851540484106 0.158947941525096 0.156615975517730 0.15915548056713 0.159663710389729 0.156337719420372 0.158826613735588 0.156080854437974 0.163383134689598 0.158952739731850 0.157421443175227 3 3 - 6523511 6524670 6524051.045 6523385 6525549 - gene protein_coding_gene FALSE TRUE AT3G18930.1|AT3G18930.2 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3G (ATL3G) [Arabidopsis Thaliana] (GB:Q67YI6;GB:Q9LJ73); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G03550.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99194.1); similar to Os12g0596200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067185.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.307672455270514 2.67333027421224 0.0218477923830587 1 2.11308879240658 6.41866104752279 0.307672455270514 0.134796758043231
AT1G24180_at 6.34757661873227 6.95348391162836 6.03384852887222 6.65735088368929 5.97426520510381 5.59489875845918 6.00328925932559 6.69641406736481 5.60829636895665 5.8312166260398 7.13197911731718 7.59063999298158 6.88926126805416 6.59895320590458 7.2036157914852 6.92657927649669 6.63078259948996 6.32528393377223 5.6255138301007 0.266215890340969 0.263863492120103 0.268563549913439 0.266582527668616 0.264324445476768 0.274980290859039 0.265563574395249 0.266263428122343 0.275712669818259 0.263863492120103 0.269796728916591 0.26435670896206 0.263863492120103 0.273521065629452 0.271247498313205 0.263863492120103 0.282817752142219 0.272994185164934 0.270619587450466 1 1|0 -|/ 8560968 8562718 8561943.667 8560519 8563484 - gene protein_coding_gene FALSE TRUE AT1G24180.1 IAR4 (IAA-conjugate-resistant 4); pyruvate dehydrogenase (acetyl-transferring) Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900 Identical to Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) (IAR4) [Arabidopsis Thaliana] (GB:Q8H1Y0;GB:O48685); similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G59900.1); similar to pyruvate dehydrogenase E1 alpha subunit (GB:AAA86507.1); similar to Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial precursor (PDHE1-A) (GB:P52902); similar to pyruvate dehydrogenase [Citrus x paradisi] (GB:AAY86036.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) 0.394347251461841 2.6732425036073 0.0218512025436032 1 2.11295186927156 12.582880490757 0.394347251461841 0.203309383914486
AT4G14660_at 4.05712630954571 3.91004919553866 3.45711110759721 3.73347342367804 3.67956626800224 3.41689981473749 3.3393195260803 3.32038255715747 3.41405836339185 3.64358091345101 3.47471882086234 2.75267737345431 3.33056209022049 3.29262320990051 4.01028927938776 2.86221599296982 2.70554443346390 3.11278448597181 3.736061045003 0.191407760361301 0.194451645001982 0.179696765116196 0.183944379247165 0.181205338961655 0.186265516295407 0.185916222595151 0.184117377870423 0.18708120725575 0.192449183150316 0.182976320617900 0.181996238907018 0.179955459729414 0.18325246212928 0.185060125256952 0.184432095445936 0.190305809259930 0.186238131883146 0.179696765116196 4 4 - 8406503 8406912 8406728.545 8406330 8407840 - gene protein_coding_gene FALSE TRUE AT4G14660.1 RNA polymerase Rpb7 N-terminal domain-containing protein similar to RNA polymerase Rpb7 N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G22900.1); similar to putative receptor kinase [Oryza sativa (japonica cultivar-group)] (GB:AAS98454.2); similar to Os05g0157100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054703.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA polymerase Rpb7, N-terminal; (InterPro:IPR005576) -0.245089945039939 -2.67278541541202 0.0218689703657604 1 2.11223881498416 7.00952955932255 -0.245089945039939 0.0707960859044159
AT4G16680_at 1.31607938041004 1.23242317995192 2.5562223705875 2.54804211586844 2.42148027774526 1.79896252869396 2.39218856618054 1.62931902308584 1.24809550869337 1.83176100300441 1.59852265045931 0.892733134052243 1.74086971643719 1.73320289981103 0.784712666743313 2.5742524141436 2.53838655283760 1.77906134056841 1.99219021448080 0.231359116218933 0.230276852381045 0.225924529192376 0.228665425063377 0.225924529192376 0.231070617065005 0.22698152965206 0.232532660921198 0.234855004797414 0.231751775735205 0.233204193499378 0.23600190565871 0.238695679612120 0.232107090217360 0.234157018770882 0.225924529192376 0.238320992353197 0.235374626503489 0.228391089757609 4 4 - 9388149 9388639 9388408.182 9388093 9390796 - gene protein_coding_gene FALSE TRUE AT4G16680.1 RNA helicase, putative similar to MEE29 (maternal effect embryo arrest 29), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT2G35340.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Danio rerio] (GB:NP_956318.1); similar to hypothetical protein CC1G_02978 [Coprinopsis cinerea okayama7#130] (GB:EAU85955.1); similar to RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01767.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.351604857819383 2.67187408419336 0.0219044381433452 1 2.11081718729994 3.68478963728599 0.351604857819383 0.17101474859673
AT2G36660_at 1.39290830177191 1.62740080088323 1.11970466212119 1.31131967360652 1.35152878781765 1.22148361654976 1.34026323089333 1.09279384229681 1.68137920478193 1.52909105289683 1.06639979911585 1.05125646512977 1.27397049780024 0.910221807904805 1.33071389732421 1.16722668412002 1.45994392722245 1.35686112878845 1.53097178276903 0.232512745179802 0.232788919332587 0.242254849982890 0.234539624807541 0.236472607790927 0.234366728107354 0.231995546562727 0.230348922586533 0.253163625059477 0.232437371515425 0.237456751501661 0.230930298298939 0.237806358092253 0.232938073513951 0.244288072473395 0.233225336637223 0.239592550482028 0.234491993292064 0.2393208234714 2 2|0 -|/ 15368559 15369327 15368827.111 15368400 15371477 - gene protein_coding_gene FALSE TRUE AT2G36660.1 PAB7 (POLY(A) BINDING PROTEIN 7); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins. Identical to Probable polyadenylate-binding protein At2g36660 (Poly(A)-binding protein At2g36660) (PABP) [Arabidopsis Thaliana] (GB:Q9ZQA8); similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to Os03g0278500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049727.1); similar to PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP 1) isoform 10 [Canis familiaris] (GB:XP_856875.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515) -0.245369381580539 -2.67147154868059 0.0219201224202074 1 2.11018927159257 2.69845284253004 -0.245369381580539 0.0713220164320563
AT2G19990_at 3.31895472253896 3.64678672552992 2.70656856084984 2.60623206443765 2.19752145341583 2.60483474637131 2.61686728409597 2.65148429487587 1.99385797149375 2.81101540036622 1.91018111594263 2.36810438749278 2.36893065437444 2.27273057816898 2.57097647445472 2.12067847950894 1.93967897967442 2.52812542622959 1.96397608526668 0.240950795987275 0.229949444536186 0.228053960647383 0.230432081361509 0.225571879031283 0.225475796121219 0.228608248689209 0.220921902568548 0.228166687097998 0.22182921890114 0.220921902568548 0.222839802048329 0.224478596211056 0.229557938597831 0.220921902568548 0.222986552707701 0.226211893013974 0.224385732070112 0.234242221323463 2 2 - 8637149 8637596 8637408.545 8637065 8637769 - gene protein_coding_gene FALSE TRUE AT2G19990.1 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive. similar to pathogenesis-related protein, putative [Arabidopsis thaliana] (TAIR:AT4G33720.1); similar to prb-1b [Nicotiana tabacum] (GB:CAA47374.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.263045720443129 -2.67085596423520 0.0219441293930821 1 2.10922904199273 5.0517606886926 -0.263045720443129 0.0923281405114421
AT2G29980_at 10.1906273204919 10.2043619592168 7.50753347520668 7.5693749159132 8.91017920718949 8.73034392733123 7.86400177020922 8.42861912026828 10.3262419516892 9.54103028035915 10.9438949966272 11.1232082283886 10.2869726861760 10.4485559939676 11.2305708908780 10.1688402522148 8.9060795594486 10.0983799580970 9.99760108880012 0.152135662512402 0.153577802725558 0.187388166361826 0.174089458282209 0.152584521891356 0.163680754744215 0.170187198750577 0.163850883513021 0.153273960276477 0.152135662512402 0.157683910935199 0.157881653875416 0.159679313286289 0.157396848861375 0.158263755152084 0.156555815512768 0.159519607352845 0.152135662512402 0.155804880713221 2 2|0 -|/ 12788882 12789685 12789240.111 12788668 12792130 - gene protein_coding_gene FALSE TRUE AT2G29980.1|AT2G29980.2 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. Identical to Omega-3 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) (FAD3) [Arabidopsis Thaliana] (GB:P48623); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to Omega-3 fatty acid desaturase, endoplasmic reticulum (GB:P48624); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91879.1); similar to omega-3 fatty acid desaturase [Brassica napus] (GB:AAT09135.1); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261)|Identical to Omega-3 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) (FAD3) [Arabidopsis Thaliana] (GB:P48623); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91879.1); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261) -0.273344807013914 -2.67063289845146 0.0219528350890493 1 2.10888109554122 18.8535155091488 -0.273344807013914 0.103130486792523
AT4G26950_at 1.08327130646712 1.20583203889752 1.55754614446988 1.87045068468669 1.63369187667139 1.72066627194254 2.25759296418862 2.21851413194943 1.60841152827820 1.96009368104364 2.05849931362767 1.81417956875174 1.83397766327466 1.85140408708453 1.58370162007876 2.59139741401343 2.30965519714399 1.81977078709814 0.967912419951653 0.187004079534204 0.180735236752287 0.180735236752287 0.180735236752287 0.180873132149894 0.187623786919151 0.184337434312422 0.185566821963035 0.187329030967181 0.186149118985077 0.180735236752287 0.180735236752287 0.182582264198140 0.184157363799054 0.18567901153702 0.186513725166273 0.189614631123295 0.184711167798307 0.181007570769788 4 4 - 13533729 13533984 13533849.091 13533570 13534165 - gene protein_coding_gene FALSE TRUE AT4G26950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04630.1); similar to Protein of unknown function, DUF584 [Medicago truncatula] (GB:ABE91657.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.23748506534662 2.67031889311671 0.0219650957249455 1 2.10839130392214 3.44092688548012 0.23748506534662 0.0604508662683823
AT3G57530_at 7.37205417714659 7.63822975987028 7.9592186221777 7.93291991269772 8.58407495720372 8.14331307324742 8.15010490609923 7.81097283321506 7.92035944219424 7.63562671049908 8.29804287069138 8.33839867039023 7.71094245559259 8.05022762383044 7.02967009817021 8.09391082333656 7.74267304870938 8.02512698372504 7.75197385554577 0.197363932324514 0.183658667411253 0.18535336149748 0.194364568308124 0.190713798309517 0.179449451481361 0.189012598572984 0.191241748720104 0.193958195025545 0.191287835075269 0.189490069587469 0.183676616121250 0.186992127435406 0.197460320529794 0.198488982143279 0.184024517231406 0.198374875583152 0.187597954378584 0.179449451481361 3 3 - 21307652 21308475 21308098.3 21307531 21310568 - gene protein_coding_gene FALSE TRUE AT3G57530.1 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium- and calmodulin-dependent protein kinase/ kinase Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro similar to CPK14 (calcium-dependent protein kinase 14), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41860.1); similar to CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12480.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to putative calcium-dependent protein kinase [Isatis tinctoria] (GB:AAZ30035.1); similar to calcium-dependent protein kinase [Fragaria x ananassa] (GB:AAB88537.1); similar to calcium-dependent calmodulin-independent protein kinase isoform 2 [Cicer arietinum] (GB:AAP72282.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.27692264565411 2.6698091462013 0.0219850137217998 1 2.10759620520997 15.7890830674833 0.27692264565411 0.106793470826742
AT1G79310_at 1.83889662851377 1.73777708174429 1.76405896164490 1.74832263709767 1.57831300174011 1.59491768965525 1.74388047013613 1.67940096119392 1.94578908427376 2.03767154396511 1.73619171014120 2.00026237781746 1.49968496653302 1.90726013048069 1.65913513201976 1.40900237800410 1.85757343662299 1.74443987830328 2.27499487056567 0.163377086035733 0.168315808956220 0.169142875355005 0.167521915264241 0.163377086035733 0.167808562188020 0.165219197463834 0.164357014234986 0.167577401813546 0.169289190916686 0.166787886244320 0.169731190391115 0.173139346257584 0.168120632548634 0.167812684239757 0.172058027794477 0.168082930917138 0.176756069981051 0.168094925413694 1 1 + 29839725 29840269 29839990.636 29838879 29840438 + gene protein_coding_gene FALSE TRUE AT1G79310.1 latex-abundant protein, putative (AMC4) / caspase family protein similar to latex-abundant protein, putative (AMC7) / caspase family protein [Arabidopsis thaliana] (TAIR:AT1G79340.1); similar to metacaspase 1 [Lycopersicon esculentum] (GB:AAM51555.1); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) -0.21902189727854 -2.66976850662876 0.0219866024539385 1 2.10753281673489 3.61711872105333 -0.21902189727854 0.0211283497041037
AT1G62200_at 7.47598442016303 8.03173560993524 7.82808248761711 7.86867852303356 8.72713593443141 8.17751539004595 7.43103334402373 7.30188712986396 6.75878131640711 7.22056458478616 7.10490944202851 6.91048142273201 7.24410535582336 7.52691615841572 6.40361112345822 7.36369543694147 7.0240697953451 7.29896626777025 7.25931766092403 0.200437746185901 0.193261856659498 0.211433490990505 0.197815326306880 0.207482778077295 0.214546563446042 0.197397913369643 0.19215694816857 0.206255845457605 0.195562042961890 0.192540599954028 0.199610204100278 0.205964841881865 0.198906172517846 0.211062226855322 0.190837631828634 0.214165266933728 0.198605549305393 0.191229775396193 1 1 - 22985866 22986379 22986113.273 22985701 22988024 - gene protein_coding_gene FALSE TRUE AT1G62200.1 proton-dependent oligopeptide transport (POT) family protein similar to ATPTR2-B (NITRATE TRANSPORTER 1), transporter [Arabidopsis thaliana] (TAIR:AT2G02040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT2G02020.1); similar to LeOPT1 [Lycopersicon esculentum] (GB:AAD01600.1); similar to peptide transporter 1 [Vicia faba] (GB:AAP44102.1); similar to amino acid/peptide transporter [Prunus dulcis] (GB:AAF20002.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.310116406197039 2.66967077195762 0.0219904236835156 1 2.10738037337834 14.9498310528993 0.310116406197039 0.137278158829415
AT1G31817_at 3.53483621049939 4.42326278363152 3.25476766764743 3.67237062200646 4.10962723851042 3.56005207077541 5.08559211723316 5.51320974839975 3.69453059956513 3.86144677734332 4.19247115217567 4.13792589900637 3.80038351695395 3.69232918097950 4.36740542580913 4.17465139038193 3.24468645732687 3.73175305752941 3.63035277300635 0.220192631913360 0.216682874625030 0.226364246680132 0.232911359581609 0.221715005888780 0.223435888404218 0.220013599415352 0.220317792710279 0.23578957166566 0.223138611300824 0.224022891429197 0.216743847589091 0.221990860925072 0.233292098538818 0.217638016773509 0.219908168716573 0.234881441695819 0.228520833782662 0.226231627627177 1 1 - 11414993 11415477 11415267 11414730 11416425 - gene protein_coding_gene FALSE TRUE AT1G31817.1 NFD3 (NUCLEAR FUSION DEFECTIVE 3); structural constituent of ribosome similar to small subunit ribosomal protein, putative [Oryza sativa (japonica cultivar-group)] (GB:AAT85310.1); similar to Os03g0385900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050253.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) -0.400548385911969 -2.66950812861910 0.0219967841701242 1 2.10712668905498 7.96745354566725 -0.400548385911969 0.208283614661121
AT4G00360_at 10.2199569150716 10.5007720525954 10.5762808308971 10.6971852618147 11.4713003283648 11.1512016091422 11.3645279063860 11.5075240968649 11.3445274723366 11.3553384369060 12.1643614152073 11.8552361758351 11.8771622890566 11.9183105428364 11.3644793724146 11.2806245940742 11.1402084568347 11.6990386763215 11.0000596149069 0.101361621863679 0.0954481836761043 0.105414940030502 0.102993977272437 0.0988414279785904 0.102395087125182 0.0941681114687675 0.0965593637292612 0.102010979369325 0.0949259635494942 0.0965837457005564 0.0954594313286163 0.095607873982414 0.0993750703424822 0.09932655085882 0.0941681114687675 0.102934868185934 0.0983687491686372 0.0941681114687675 4 4 + 162227 162751 162481 160768 163023 + gene protein_coding_gene FALSE TRUE AT4G00360.1 CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. Identical to Cytochrome P450 86A2 (EC 1.14.-.-) (CYP86A2) [Arabidopsis Thaliana] (GB:O23066); similar to CYP86A4 (cytochrome P450, family 86, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01600.1); similar to CYP86A8 (LACERATA), fatty acid (omega-1)-hydroxylase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45970.1); similar to CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G63710.1); similar to cytochrome P450 monooxygenase CYP86A24 [Glycine max] (GB:ABC68403.1); similar to cytochrome P450 [Triticum aestivum] (GB:AAG17470.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE91393.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.252457973548989 2.66881471723709 0.0220239218341023 1 2.10604515525182 22.3839617243283 0.252457973548989 0.0805003949799539
AT4G31310_at 7.6580798640777 7.69090312693013 7.53895744964481 7.53744235630642 8.18079835871207 7.7766975525191 8.71989099940806 8.44301524026882 6.79953253142708 7.3962682595963 6.7070546997275 7.11121822269943 7.50890037215607 7.22924606391781 6.31287960333487 7.4082143071532 7.72669450204183 7.3370820737498 7.7361221143446 0.20280280028487 0.202332779729139 0.204268877977942 0.208539883547547 0.202500458667373 0.212715998007663 0.211297171166105 0.204021196395678 0.238463500255611 0.202746332660867 0.218247405106407 0.205190406288701 0.210515830798862 0.212091451677853 0.213058617207643 0.204441463926063 0.209914435354212 0.209117645605445 0.208651955252702 4 4 + 15191332 15192319 15191650.4 15191331 15192602 + gene protein_coding_gene FALSE TRUE AT4G31310.1 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24390.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); similar to hypothetical protein CHGG_02445 [Chaetomium globosum CBS 148.51] (GB:XP_001228961.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) -0.256239058117003 -2.66862057513738 0.0220315258083358 1 2.1057423521488 15.1823742180102 -0.256239058117003 0.0849621401752622
AT1G18290_at 1.58187574928808 1.51302382468833 1.39985602129626 1.89053852417314 1.18319773708760 1.67527962469021 1.19912636815296 1.44281754619557 1.20075165753398 1.37690970007169 1.95666994932279 1.79541606755667 1.95595924627657 2.17289989638844 1.82695370912786 1.81032938543285 2.43862992192443 1.46708969323821 1.71923788029225 0.229978741159165 0.230084299045647 0.229015660885161 0.231534112841262 0.221074711323603 0.230725652466254 0.230676444174969 0.226942058804049 0.221119780637604 0.219568323831980 0.229640489093649 0.227781151607763 0.222780788084896 0.234154566499770 0.226172311154623 0.221573989718465 0.223668802226959 0.231059362344977 0.235117870416634 1 1 + 6297439 6297785 6297601.182 6297357 6298321 + gene protein_coding_gene FALSE TRUE AT1G18290.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52452.1) 0.299350421211536 2.66804076727496 0.0220542506578944 1 2.10483804233410 3.16586103925874 0.299350421211536 0.127994940349004
AT3G20490_at 2.59532454314508 2.54281101319611 2.71586534360306 2.90863702321367 2.87445851633938 2.73317419345008 3.07644710878425 2.76926351760831 1.87732877344794 2.02546118310664 2.93468380926343 2.2906928648952 1.96445221833354 2.58718820367899 2.48547762857528 2.50116233938807 2.65995164989406 2.20015099868741 2.18757067358134 0.227498107282152 0.225827887624047 0.225257008963521 0.236515603418539 0.229112603902546 0.229112214566300 0.226682217489434 0.230664388806332 0.236362831914722 0.225012504783103 0.231043286064978 0.229481201058471 0.225332824468004 0.228669812543192 0.2350104071539 0.232580492295763 0.232249591352359 0.233018504246393 0.233854451716648 3 3 - 7154580 7155059 7154848.364 7153545 7156542 - gene protein_coding_gene FALSE TRUE AT3G20490.1 similar to OSIGBa0148A10.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66824.1); similar to Os04g0625100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053937.1) 0.242460988756154 2.66711975539216 0.0220903963145866 1 2.10340161424532 5.01854274448489 0.242460988756154 0.0679648061787002
AT1G10610_at 3.65653298266658 3.79716654903103 4.4711146361851 4.05899027238726 5.75489683684218 4.9710940277781 4.40432768377842 3.39771601070822 5.06233235296691 4.76394747679012 4.82562436109204 4.55709206301126 5.22483881981934 5.04645998209937 4.82981254290824 5.33573789428671 4.95417077043933 4.71211368377917 5.37258459010067 0.203029437485109 0.198744323406346 0.206666819983553 0.197413812027086 0.199478315106280 0.197153777086330 0.191865966570586 0.20627352151517 0.200837776799050 0.194027829879951 0.195169391365561 0.189703088975428 0.189703088975428 0.196476607336492 0.210696123004294 0.191044837089845 0.209905147481444 0.190142908608271 0.204268848416153 1 1 + 3507884 3508560 3508201.6 3506187 3509007 + gene protein_coding_gene FALSE TRUE AT1G10610.1 DNA binding / transcription factor similar to AMS (ABORTED MICROSPORES), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16910.1); similar to bHLH transcription factor [Brassica napus] (GB:CAD54298.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.434765630739482 2.66710849025428 0.0220908387846123 1 2.10338404528147 9.31498957723811 0.434765630739482 0.233286300561784
AT1G25380_at 6.34016880824582 6.21758794522691 6.90724672986868 6.40150749020696 6.66516684807115 6.1597261975148 6.58691451458822 6.06592047709749 5.14882182793894 5.49323418021133 6.16753752475959 6.45684151257361 5.60952779166979 5.70425772702867 6.33409666093898 5.89326394294132 6.13795063627392 5.31926902069947 5.9265268771183 0.226623498182976 0.224646906436084 0.226333175155027 0.23092024930906 0.227558366884649 0.238405609408208 0.236860696526610 0.224646906436084 0.235617996851906 0.225638705122467 0.229498949170340 0.227770912593970 0.228382484829926 0.240013955600744 0.234994541708964 0.229035624807121 0.258510616023493 0.243113786189270 0.238645357195748 1 0|1 /|+ 8905074 8905763 8905389.8 8903457 8905989 + gene protein_coding_gene FALSE TRUE AT1G25380.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G47490.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL55805.1); similar to Os01g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043181.1); similar to Os05g0357200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055296.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.33037301024013 2.66671822306443 0.0221061730485968 1 2.10277539505476 12.1558819082859 0.33037301024013 0.154562451777099
AT3G27620_at 2.03624011172159 2.15572583766283 2.34642612509154 2.36363842781890 1.96415543622193 2.71558437148431 1.86942593357126 1.95266374682424 2.14568838427659 1.91691180498138 2.27175842739610 2.35313524679826 2.32942648515148 2.43217786336499 2.28989618808729 2.17781686824361 2.24071644637914 2.10916687714045 1.97068547822351 0.229449842551671 0.221752540693585 0.232894834388016 0.224846018265695 0.225415342509154 0.226252887976869 0.230138795943241 0.221489710314745 0.229541693990341 0.223513774599893 0.218896047514862 0.224199733300684 0.218451599428126 0.226505219799760 0.22944298012558 0.225549834741895 0.227051549832478 0.229396342742131 0.221240844028962 3 3 - 10230696 10231130 10230924.091 10230282 10231939 - gene protein_coding_gene FALSE TRUE AT3G27620.1 AOX1C (alternative oxidase 1C); alternative oxidase encodes an isoform of alternate oxidase. expressed in all tissues examined and expression is not induced by antimycin A, an inhibitor of complex III in the mitochondrial respiratory chain. Identical to Alternative oxidase 1c, mitochondrial precursor (EC 1.-.-.-) (AOX1C) [Arabidopsis Thaliana] (GB:O22048); similar to AOX1B (alternative oxidase 1B), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G22360.1); similar to oxidase (GB:AAA32870.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) 0.304176880267764 2.66585412685419 0.0221401623836068 1 2.10142781159241 4.31878601020657 0.304176880267764 0.132491071085706
ATMG00640_at 3.22399203184458 4.86507811035139 5.32512524191599 5.95482623985928 5.58262625399391 6.62053085983194 4.1985440568126 5.73037368136049 4.83605060377038 4.73243381065252 5.19667122473641 3.52978011854226 5.31964349116252 4.79651879439393 3.28140059282474 5.85926082051054 6.30507144663547 4.79959442625348 4.71407877319535 0.298375000273945 0.274212038021885 0.268330449466537 0.277604692742940 0.279766480999608 0.27273581562208 0.273059572457348 0.272269185473668 0.285231146509408 0.269061307919837 0.274144243363122 0.272921157689823 0.272364817203621 0.28014235802091 0.307530950077554 0.273954426310657 0.274087846178915 0.2825408790651 0.268477190863582 M M - 188160 188595 188356.273 188084 188662 - gene protein_coding_gene FALSE TRUE ATMG00640.1 encodes a plant b subunit of mitochondrial ATP synthase based on structural similarity and the presence in the F(0) complex. similar to Uncharacterized mitochondrial 22 kDa protein AtMg00640 (ORF 25) (GB:Q04613); contains InterPro domain ATPase, F0 complex, subunit B, mitochondrial; (InterPro:IPR008688) 0.745709198658843 2.66540174693453 0.0221579774409228 1 2.1007223326011 10.0110605646239 0.745709198658843 0.441660280761909
AT1G43580_at 7.77327519332427 7.79131776126681 7.0288799937308 7.51820601052707 8.06709901752677 7.93888047112096 7.63202932940736 7.42765375243911 7.57020200511127 7.41948795270232 7.55438542932253 7.30213584707775 7.06408214786235 7.36932452681746 7.02878509760134 7.05577767024148 6.66745550524237 6.83663426739192 7.8730464941186 0.167409126194629 0.166136236929945 0.165279278812127 0.164526679012708 0.160318628916084 0.161350479712747 0.163646331132013 0.177638041145121 0.163494613493506 0.161390092870409 0.169528860383671 0.167422999058808 0.169130228414384 0.167548385528275 0.170275959212260 0.163046222174396 0.178282495631678 0.165178235064430 0.168513393878178 1 1|0 -|/ 16413116 16413716 16413382.2 16412972 16415168 - gene protein_coding_gene FALSE TRUE AT1G43580.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83163.1); contains domain SPHINGOMYELIN SYNTHETASE (PTHR21290) -0.264446112541201 -2.66498906261035 0.0221742416379332 1 2.10007877073143 15.0125350472122 -0.264446112541201 0.0944654761722494
AT1G20950_at 8.43576139758492 8.24357114318628 7.95471506472117 7.89769321439555 7.78061651957914 7.99679373585225 9.01345273233352 9.28191590728911 8.72078670979725 8.66212874631365 9.08710590559093 9.16072662981222 8.82449503415747 9.1117239219573 9.18660821368354 8.57435114439486 8.42818459437444 8.83127710693727 8.26814059919085 0.119173078030846 0.115062469610614 0.125745501370052 0.119319087226025 0.125027452655075 0.124328209581960 0.125721480350836 0.122543040026520 0.123003699324784 0.115596834173881 0.121638799764215 0.119267539355544 0.118316151814349 0.119732842236625 0.119477787701822 0.126631471431075 0.126808539160794 0.120052103247536 0.116136968837366 1 0|1 /|- 7297470 7298204 7297828.125 7297228 7301404 - gene protein_coding_gene FALSE TRUE AT1G20950.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Arabidopsis thaliana] (TAIR:AT1G76550.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41140); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:P21342); similar to pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus x paradisi] (GB:AAC67587.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) -0.243006805515921 -2.66470278055231 0.0221855311719387 1 2.09963233428966 17.0510205080165 -0.243006805515921 0.0690038302850075
AT2G20300_at 4.24011920485084 3.88375729584035 3.48034068863138 3.86850291928479 3.85790009044189 3.99463867799086 4.8965535853991 4.74157848279684 4.48916962352745 4.59584671520234 5.31134940702881 5.34022885031175 4.60776591346594 4.75768802334842 5.13651163852682 4.99699203723644 4.41648062917562 4.6877952031064 5.3212825537558 0.193196060166693 0.191442607174718 0.200939400429221 0.200006147327542 0.193634174288061 0.194158224299332 0.198539760455185 0.196160767431657 0.193008452545600 0.193950272587214 0.188609584543343 0.195498519380866 0.194276463454506 0.204106373358789 0.193981626700567 0.190779348341623 0.196129179919784 0.201673859913013 0.197192544740592 2 2 - 8763556 8764131 8763885.182 8763006 8767303 - gene protein_coding_gene FALSE TRUE AT2G20300.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56890.1); similar to putative receptor protein kinase PERK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD22003.1); similar to Os02g0815900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048507.1); similar to CMV 1a interacting protein 2 [Nicotiana tabacum] (GB:ABB36644.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.267702358094028 -2.66463771189825 0.0221880979483188 1 2.09953086516898 8.97489941495628 -0.267702358094028 0.097952371895008
AT2G01640_at 3.44644714894544 3.5401725951814 3.30271515314181 3.31716937030957 3.37105925408237 3.30983992236102 4.14736875906063 3.680233798801 2.61716079717043 3.07219775165851 3.04306262474079 3.18720693607477 2.69608574772861 2.65911338513959 3.00239192022593 2.70683282897221 2.57817325892856 2.67550998973541 3.15676237759647 0.216893013006264 0.217262151362919 0.221817882764716 0.219135299075503 0.220247509350299 0.221285310510970 0.215934273135031 0.224327101997686 0.228096050023429 0.218258944128664 0.219354868271347 0.216515966275359 0.221734710804069 0.215812137353665 0.219377588498121 0.215812137353665 0.227428771444257 0.226555127352765 0.220073137593623 2 2 + 283371 283926 283724.364 283003 284124 + gene protein_coding_gene FALSE TRUE AT2G01640.1 similar to Os12g0244500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066489.1) -0.254259769777663 -2.66409036121114 0.0222097010461082 1 2.09867732935576 6.39800278119459 -0.254259769777663 0.0831664527813495
AT4G34430_at 3.81806482028915 3.95200483638279 4.00834828515918 4.1481423447559 4.47218138778113 4.15707386844392 4.28211493380584 3.74887613377167 4.3265051805459 3.56429442262551 4.27304374456861 4.32783045490324 4.16657715825965 4.30755625465456 4.08272273357592 4.3418067890205 4.21147723004985 4.14432258418307 3.85168246302172 0.162337247161778 0.165411707171944 0.172849730173707 0.168263589793016 0.161861700780145 0.169319309494917 0.164762974176141 0.162000911882883 0.164298652169642 0.163794492859769 0.167646604266289 0.165734563927316 0.164259598635465 0.165210148484068 0.165721950328170 0.161805096089722 0.176098531017772 0.170270977123116 0.166244716525752 4 4 + 16461129 16464959 16463405.222 16460924 16465327 + gene protein_coding_gene FALSE TRUE AT4G34430.1|AT4G34430.2|AT4G34430.3|AT4G34430.4 CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor Member of a small family of SWI3-like genes in Arabidopsis. Referred to as CHB4 in Zhou et al. (2002). Identical to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member (AtSwi3C) (SWI3C) [Arabidopsis Thaliana] (GB:Q8VY05;GB:O65671;GB:Q8GZ04;GB:Q9SZ08); similar to ATSWI3C (Arabidopsis thaliana switching protein 3C), DNA binding [Arabidopsis thaliana] (TAIR:AT1G21700.1); similar to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member (AtSwi3C) (GB:Q8VY05); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member (AtSwi3C) (SWI3C) [Arabidopsis Thaliana] (GB:Q8VY05;GB:O65671;GB:Q8GZ04;GB:Q9SZ08); similar to ATSWI3C (Arabidopsis thaliana switching protein 3C), DNA binding [Arabidopsis thaliana] (TAIR:AT1G21700.1); similar to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member (AtSwi3C) (GB:Q8VY05); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.281963860196777 2.66404138035304 0.0222116352609826 1 2.09860094988766 8.14638972999018 0.281963860196777 0.112301500186693
AT4G28850_at 0.86642511745626 0.930073666460627 0.94190971796101 0.564140148468811 0.652824257998911 0.770860397648073 0.750235001392417 0.736728845952436 1.53984151574891 0.964464605472686 0.624460952862887 0.532158960218269 0.856999013624468 1.09107377180278 0.901908144050077 0.722443527054784 0.610486964219971 0.97550439523843 1.05799294517541 0.185106748452352 0.195305390790539 0.18805155129338 0.188008879343090 0.191031687804754 0.191161559278204 0.185106748452352 0.185106748452352 0.196723635338363 0.185106748452352 0.19557407636412 0.185106748452352 0.189598969128999 0.185106748452352 0.187551303919235 0.185106748452352 0.1879030584804 0.188265512159456 0.185106748452352 4 4 + 14244911 14245753 14245269.273 14244301 14245963 + gene protein_coding_gene FALSE TRUE AT4G28850.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Putative xyloglucan endotransglucosylase/hydrolase protein 26 precursor (EC 2.4.1.207) (At-XTH26) (XTH-26) (XTH26) [Arabidopsis Thaliana] (GB:Q9SVV2); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT2G18800.1); similar to xyloglucan endotransglucosylase/hydrolase [Sa (GB:BAE06063.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.243242791647305 -2.66397363418008 0.0222143107780206 1 2.09849530855706 1.76505588830046 -0.243242791647305 0.069411087031498
AT2G43290_at 5.48293693901978 5.56621310586656 5.40744842651455 5.1177278329078 5.55831546358554 5.72808932720109 6.39985968059186 6.57005618818026 7.06076817075395 5.73608615617008 7.32086284134213 6.73668683362043 5.90828690976906 7.43306932506352 6.30194235967335 5.4240718608106 5.37015975993455 5.95072285377892 5.91233888764536 0.189762472027715 0.184947652972118 0.189518302503530 0.185667679096664 0.184295498594273 0.190701301711053 0.187046894571345 0.186528719353319 0.192611985514644 0.187788370022627 0.186560803740296 0.185552218798303 0.189488758646963 0.181919217953009 0.184285222554030 0.181919217953009 0.193015082154222 0.18698766060699 0.187985231344004 2 2 - 17998515 17998910 17998752.545 17998129 17999124 - gene protein_coding_gene FALSE TRUE AT2G43290.1 MSS3 (MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3); calcium ion binding Encodes calmodulin-like MSS3. similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G59440.1); similar to calcium-binding protein [Lotus japonicus] (GB:CAB63264.3); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) -0.24127180552655 -2.66395570738273 0.0222150188190357 1 2.09846735410620 11.9998924110779 -0.24127180552655 0.0667244024790986
AT1G05055_at 5.96215570463426 5.71773915947521 5.89457418324966 6.22250650225709 6.21239044674721 5.87661188912424 6.00818012176444 6.28908674534882 4.80338561166762 5.18405588402337 5.81920265174353 5.8232940632126 5.53219718687469 5.21147171985082 5.58839587208922 5.16590399279429 5.36776973945798 5.47668453983623 5.03949103777676 0.208283623652274 0.201409314559085 0.212137824920506 0.204290453938047 0.214908579197289 0.205230092644338 0.217111992713357 0.211990899749534 0.22029061256297 0.210403107554667 0.201409314559085 0.203315538762035 0.201409314559085 0.208447046461874 0.201409314559085 0.206852091446628 0.213375834437801 0.211783730540149 0.213669264590485 1 1 - 1448924 1449580 1449296.545 1448717 1450886 - gene protein_coding_gene FALSE TRUE AT1G05055.1 ATGTF2H2/GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2); general RNA polymerase II transcription factor Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD. similar to OSJNBa0043L24.23 [Oryza sativa (japonica cultivar-group)] (GB:CAE04735.1); similar to RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 (ISS) [Ostreococcus tauri] (GB:CAL53494.1); similar to Os04g0508900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053274.1); contains InterPro domain TFIIH C1-like, C-terminal; (InterPro:IPR004595); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain TFIIH basal transcription factor complex, subunit SSL1; (InterPro:IPR012170); contains InterPro domain Ssl1-like; (InterPro:IPR007198); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.273183891057686 2.66376356460917 0.0222226091388191 1 2.09816773448447 11.2764518350193 0.273183891057686 0.103679073143040
AT1G75550_at 1.92198083784388 1.51202947880906 2.13109035729300 2.39857657804974 1.79263124281060 2.26423271422829 1.56673822652665 1.37127578348484 1.82325122536254 1.92043885736325 1.80699605064261 1.62476140462233 1.76341763535014 1.81311039256438 2.06061648777564 1.94280185216273 1.81018533196545 1.44786916559536 1.51293795621215 0.213551325911092 0.205318579317455 0.210529157301686 0.204720266071738 0.209469318454868 0.203024923919847 0.204870666791229 0.209393982798196 0.200522254263327 0.207886351255970 0.209029437048712 0.207971654154561 0.205157049163684 0.204620352212313 0.206228088209445 0.204993678520255 0.206916739058623 0.213134972909196 0.20549646354036 1 1 - 28373106 28373566 28373346.455 28373098 28373601 - gene protein_coding_gene FALSE TRUE AT1G75550.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to putative glycine-rich cell wall structural protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33245.1); contains InterPro domain Glycine rich; (InterPro:IPR010800) 0.292568542600742 2.66267474131187 0.0222656700464567 1 2.09646991694166 3.6377839705795 0.292568542600742 0.122395351345003
AT4G01680_at 1.67295856930351 1.10562673387518 1.25430715869181 1.73107147428238 1.20290163017469 1.01832510846666 1.21259241177819 1.66000290256031 1.73468629965713 1.51595223611169 2.43922583825339 2.14579322888199 2.27189861154773 2.83795481250017 2.32250565933560 2.31457435457703 2.30126110315129 2.2918367085842 1.54422975704561 0.192108426325262 0.189903714830232 0.189178781440809 0.186673077857869 0.183542168864624 0.188697390528220 0.188344575623843 0.185119646401015 0.191464441531228 0.191386258308552 0.186949327197016 0.191200109791542 0.190276256687290 0.190240910034569 0.186884654029812 0.186820032888820 0.193008326718132 0.193460560697175 0.187044427255281 4 4 - 716233 716777 716537.455 716004 717579 - gene protein_coding_gene FALSE TRUE AT4G01680.1|AT4G01680.2 MYB55 (myb domain protein 55); DNA binding / transcription factor|MYB55 (myb domain protein 55); DNA binding Encodes a putative transcription factor (MYB55). similar to MYB61 (myb domain protein 61), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G09540.1); similar to MYB transcription factor MYB64 [Glycine max] (GB:ABH02909.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.328099023595184 2.66204031983778 0.0222907983020487 1 2.09548069323565 3.33918360891263 0.328099023595184 0.153171880859140
AT1G50360_at 5.54301151334702 4.48216785036244 5.47263035275914 5.13056515371667 5.72148256366471 4.89903467995467 3.95440307247797 4.30336435814891 4.82530837414799 4.8951615612066 5.4753204011564 5.2735210509793 4.71885835644615 5.48880687510105 4.94852371940949 4.88535310901577 4.52557454165604 4.47947528834977 4.68726100841521 0.199470011850535 0.207385687829695 0.207355783981720 0.208035161357917 0.199134471711426 0.207458876607172 0.214159050020955 0.202350947438291 0.209462547876955 0.196639792708228 0.201181424326691 0.201949733639518 0.212915735095447 0.199622282207009 0.19793931823568 0.199285987335125 0.223222898979836 0.213978291743885 0.202661291372482 1 1 + 18660223 18660830 18660494.5 18653417 18661044 + gene protein_coding_gene FALSE TRUE AT1G50360.1 VIIIA (Myosin-like protein VIIA); motor member of Myosin-like proteins similar to ATM2 (ARABIDOPSIS THALIANA MYOSIN 4) [Arabidopsis thaliana] (TAIR:AT5G54280.2); similar to ATATM (myosin 1), motor [Arabidopsis thaliana] (TAIR:AT3G19960.1); similar to VIIIB (Myosin-like protein VIIB), motor [Arabidopsis thaliana] (TAIR:AT4G27370.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71526.1); similar to myosin VIII ZMM3 [Zea mays] (GB:AAD31926.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.453521837723680 2.66173922370461 0.0223027339835903 1 2.09501121811599 9.82683551756436 0.453521837723680 0.247207383561214
AT4G09580_at 4.95344870377143 5.55954762518084 5.38916699534736 5.97300718160682 6.4837257622344 5.63294509192645 5.95587851589433 6.32089796927554 4.10844132706928 3.53779595595984 4.20951926849085 4.29103839270805 4.65610567656894 4.65367943375926 4.00801922532539 4.80140573859319 4.25473136119501 4.18065754112216 3.55267003057692 0.244801635723867 0.235440145482060 0.237449242233422 0.24700791548474 0.251525161337594 0.256718275689849 0.256943694279170 0.242499421348192 0.240719850423503 0.243542823061712 0.239573495677854 0.235440145482060 0.236471169383169 0.240304366055886 0.248103747205781 0.24246853374396 0.257249300473304 0.237179169100276 0.241840940958668 4 4 - 6053250 6054284 6053829.727 6052349 6054394 - gene protein_coding_gene FALSE TRUE AT4G09580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71940.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE85136.1); similar to Os03g0703900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051019.1); contains domain UNCHARACTERIZED (PTHR12677) 0.410596764716616 2.66158238561365 0.0223089536719672 1 2.09476667557391 9.8410090727825 0.410596764716616 0.216511525887186
AT1G21760_at 8.98948895624438 9.45709419695688 9.63317690225758 9.639944234802 9.86389596070762 9.85792425852386 9.4168607773262 9.6298443516221 9.01616349044753 8.96523687078732 9.24844121159253 8.97512093730714 9.41544227850923 9.33493757245398 8.76838957777826 9.37200981975088 8.97443708239317 9.12268705204129 9.04487743556434 0.0871809711865573 0.0812652563968365 0.0836340775236313 0.0849165984483868 0.0852709865802972 0.0834261008787771 0.0877895632123007 0.082913135706479 0.0848692760235271 0.084592211327204 0.0819234685015917 0.0838048106903845 0.0872704340620846 0.0883281847498519 0.0855991786704448 0.0836781629193784 0.09063535992506 0.085550012466161 0.0858156197427892 1 1|0 +|/ 7650274 7651552 7651041.778 7649183 7651805 + gene protein_coding_gene FALSE TRUE AT1G21760.1 F-box family protein similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE79796.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.259043597206974 2.66143407493303 0.0223148367707731 1 2.09453543061003 18.6411249333441 0.259043597206974 0.0889336187941687
AT3G24500_at 5.91100324382268 6.4939123343404 6.49829836686905 6.72454135327955 6.60564663984162 6.82615661645808 6.53308320550101 6.70527048888923 6.53114819449106 6.81587106468606 7.09623217808518 6.81976169568695 7.00036830710552 6.76717613381627 7.08153791914112 7.30411145108932 7.38952173359801 6.86452316739109 6.80372577413525 0.171072758268854 0.170982613120162 0.175343711973640 0.182910037404232 0.177533447919858 0.174173352849698 0.185679797367175 0.17678336440001 0.187553554789621 0.173079156461547 0.172369600812808 0.173461729921174 0.174560690484506 0.170453924244202 0.175059542624459 0.169956169634449 0.174505233648408 0.178697590672449 0.180996198279893 3 3 + 8918762 8919141 8918927.273 8918686 8919315 + gene protein_coding_gene FALSE TRUE AT3G24500.1 ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses. similar to ATMBF1B/MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B), DNA binding / transcription coactivator [Arabidopsis thaliana] (TAIR:AT3G58680.1); similar to ethylene-responsive transciptional coactivator-like protein [Retama raetam] (GB:AAL32037.2); contains InterPro domain Multiprotein bridging factor 1, N-terminal; (InterPro:IPR013729); contains InterPro domain Helix-turn-helix type 3; (InterPro:IPR001387); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.288166244054403 2.66045780513190 0.0223536012052353 1 2.09301327671307 13.4158985732969 0.288166244054403 0.118544592975880
AT1G05385_at 6.98273617745517 7.28514585328426 6.47799621155098 6.45201815958597 7.73380324842154 6.7203672593853 7.92724043595017 7.93279398380363 7.79991640134353 7.85600202772405 8.11459578606934 8.01499192752014 7.80056232151073 7.99323121605482 7.8480515619499 8.07674091575124 6.93467551938845 7.41409800583673 7.80355747992421 0.177472706658678 0.171207613052128 0.185890546325626 0.178392026031195 0.175314797658007 0.184455862677782 0.182669431918899 0.174908668322768 0.184735759923523 0.175967349400126 0.177794458861163 0.179334369367793 0.177190657753772 0.184849500258635 0.176716110795095 0.173762494376099 0.188775715142460 0.179491720978167 0.180469966930519 1 1|0 -|/ 1582808 1583612 1583193.4 1582670 1583717 - gene protein_coding_gene FALSE TRUE AT1G05385.1 photosystem II 11 kDa protein-related similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK71543.1) -0.365569894562224 -2.66000148641337 0.0223717429633245 1 2.09230182936720 14.9862345210583 -0.365569894562224 0.183079224194417
AT2G27190_at 8.41403966055197 8.36237497589943 8.41032302641475 8.1763257473155 8.95391886507003 8.50962479258432 8.03699837035457 7.67723881588938 6.52069403628726 7.73197503604873 7.09021552496017 7.27996283721474 8.17166030404497 7.47659901174064 6.85609054446943 7.59986939676895 8.1489240798494 7.01283682078152 7.62226306307143 0.165187243779029 0.160583062088118 0.163082962808233 0.167489188054127 0.183408793202630 0.166070541581234 0.165083486931627 0.159141634104964 0.181841762389487 0.163230275946138 0.162887598198815 0.163061921511322 0.164876721394963 0.172271183337295 0.183089739180311 0.166376922025891 0.160408472555804 0.181614162523168 0.159616145785619 2 2|0 -|/ 11628515 11629152 11628746.6 11628300 11630696 - gene protein_coding_gene FALSE TRUE AT2G27190.1 PAP1 (PURPLE ACID PHOSPHATASE 1); acid phosphatase/ protein serine/threonine phosphatase secreted purple acid phosphatase precursor Identical to Iron(III)-zinc(II) purple acid phosphatase precursor (EC 3.1.3.2) (PAP) (PAP1) [Arabidopsis Thaliana] (GB:Q38924;GB:Q42349;GB:Q8VZC6;GB:Q9SHS9); similar to PAP10, acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G16430.2); similar to purple acid phosphatase [Nicotiana tabacum] (GB:BAC55156.1); similar to purple acid phosphatase [Ipomoea batatas] (GB:CAA07280.1); similar to secreted purple acid phosphatase precursor (GB:AAA91803.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.276380461007617 2.65992421546717 0.0223748164492946 1 2.09218135756714 15.6906874618173 0.276380461007617 0.107272693920653
AT1G01550_at 11.1833034999504 11.3896268973181 11.4228664059401 11.5389645715105 11.8569753511378 11.6811932279512 11.2968664829034 11.2615584787921 11.0843826467679 10.9767235071938 11.1868653901770 11.2112702962295 11.1965472645264 11.1063714647922 10.893526024727 11.1720953842382 11.3108905373325 11.1668671097874 11.0465021997758 0.0774709756971848 0.0776787267554838 0.0839082272377909 0.0817540822304866 0.0780927923024559 0.0792027466883148 0.0808950653299123 0.0802700089790375 0.0917045222152001 0.0838894668179013 0.0779264056541337 0.0774709756971848 0.0836648906264163 0.0807587023745787 0.0797661179835216 0.0774709756971848 0.0834162732929222 0.0820136982664173 0.0826055046108782 1 1 + 200986 201516 201222.909 199639 201775 + gene protein_coding_gene FALSE TRUE AT1G01550.1|AT1G01550.2 BPS1 (BYPASS 1) BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46080.1); similar to unknown [Solanum tuberosum] (GB:ABB16971.1) 0.230922891062171 2.65990861133431 0.0223754371612900 1 2.09215702948443 22.549631182049 0.230922891062171 0.0513929052048001
AT2G26390_at 1.73840546324186 2.05756041074968 1.71400885052281 1.57908331081162 1.79343552981493 1.88770069663186 2.11505598480029 1.84659154320402 2.58130320789344 2.37212515152751 2.18660856689149 2.06101235744391 2.37098686389296 2.33070078624664 2.16543111916625 2.42990153635685 2.28513070941638 2.52212461295857 2.83571350549831 0.185830380472928 0.189632371737517 0.194737891987719 0.189729829054059 0.185254035613405 0.189691856711914 0.193816319205589 0.185106952319621 0.184986621298823 0.194386276882913 0.188480114461966 0.184986621298823 0.191387855621215 0.185313533003509 0.194029499974847 0.186618674240384 0.187785605502943 0.19452725994694 0.196808605589408 2 2 - 11236247 11236717 11236449.091 11236165 11237569 - gene protein_coding_gene FALSE TRUE AT2G26390.1 serpin, putative / serine protease inhibitor, putative similar to serpin, putative / serine protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G45220.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) -0.249119903073390 -2.65877242921445 0.0224206788381718 1 2.09038567815962 4.28666406906532 -0.249119903073390 0.0775902429635949
AT4G16610_at 1.93471490336287 2.34382674338993 2.64040564444752 2.65832100281909 2.3847913454777 2.8742767249505 2.58236545229724 2.32264008782668 2.06494262473507 1.91462385140124 2.66464979835305 2.31221592763547 2.6031482645509 2.32770389245735 2.21120865554411 2.5052977858419 1.86834348817243 2.28147406414957 2.35921866366139 0.216024344235584 0.214432425342910 0.220416949507456 0.224853517282207 0.214267618086082 0.226796180916693 0.213790540055343 0.215069696322677 0.237649254616759 0.221801581380919 0.213790540055343 0.226368634034087 0.213846546197783 0.218131821395839 0.219574196179438 0.213790540055343 0.229307753799094 0.223948622453474 0.225462455064380 4 4 - 9354597 9355112 9354896.727 9354343 9355309 - gene protein_coding_gene FALSE TRUE AT4G16610.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G60580.1); similar to Cys2/His2 zinc-finger transcription factor [Silene latifolia] (GB:AAY40250.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.288694368680026 2.65847636262749 0.0224324827894013 1 2.08992411425265 4.69750954533177 0.288694368680026 0.119237885728394
AT3G20180_at 1.34966927371820 1.21671239944811 1.69058289034346 1.32661598025414 1.27401978869167 1.34271832260620 1.31511388080682 1.74499990807919 1.06907262561460 1.24218297451096 1.61349538691014 1.26742107503375 1.71384882692616 2.03773989937934 1.87491830053094 1.8491352448902 1.60859206017722 1.76490748222747 1.22391756744794 0.179204369888293 0.180501298673227 0.177172481822216 0.177872265165510 0.184810609835136 0.176979524089515 0.182805297202934 0.175329544360034 0.178728897731485 0.185829610533377 0.193276587000573 0.183390359401396 0.185751172152432 0.181432059987840 0.187510395292593 0.181672974206347 0.186081121923750 0.181083650390535 0.190255467195929 3 0|3 /|- 7043398 7043596 7043494.9 7043391 7043847 - gene protein_coding_gene FALSE TRUE AT3G20180.1 metal ion binding similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G05030.1); similar to Os02g0584800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047262.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17466.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.269863304306177 2.65832294338046 0.0224386019185053 1 2.08968493814728 2.85487822567709 0.269863304306177 0.100858497994628
AT4G13360_at 8.80527503453565 8.89682837429067 9.03077068720454 9.20431143764636 9.20310311573569 8.5347688655965 8.95121852585568 8.56313302859926 7.63012635160998 8.03069632310796 8.0772252477797 8.14918926147288 8.19418878721074 8.14373121922524 8.34698130302551 8.29942734650787 8.41439594321885 8.09249141907328 7.69312254624456 0.183014740999865 0.175295596964115 0.180890376830901 0.175245129850462 0.175939229144801 0.182525735751024 0.175245129850462 0.177748749526978 0.201183743509976 0.177573931522058 0.181890555579568 0.178404574826397 0.185955951405617 0.180690387550272 0.181604573669954 0.179496744360970 0.182880508173596 0.175245129850462 0.190793508016873 4 4|0 +|/ 7776730 7777439 7777065.7 7775124 7777851 + gene protein_coding_gene FALSE TRUE AT4G13360.1 catalytic similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT3G24360.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABE91609.1); similar to Os06g0594100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057978.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.309590097338605 2.65808983532597 0.0224479025995963 1 2.08932153277028 16.8983522451464 0.309590097338605 0.137986482538277
AT3G07810_at 6.48899695530649 6.65775801128852 5.91187207096969 6.30225775222994 5.7485777081481 6.40966038452875 5.57269785399539 6.38271390944605 5.63590940824082 6.1704566231419 6.60001155213759 7.02142490126413 6.56582009239574 7.03392493441154 7.01232599018323 6.74921006378545 6.44154346998076 5.89181552987778 5.35147996580266 0.194911301193381 0.184060242177446 0.197831376483059 0.192482729075257 0.188905476637539 0.193879406073601 0.187219350040451 0.189931812222584 0.197045438267124 0.189872873826387 0.189686897555646 0.194353280069343 0.193100951138761 0.186129690403207 0.186533113037647 0.184060242177446 0.189920637138756 0.205474212567973 0.190038897231767 3 3 + 2494002 2494494 2494313.091 2492279 2495756 + gene protein_coding_gene FALSE TRUE AT3G07810.1|AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT5G47620.2); similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G26650.2); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.381388932076371 2.65777023767618 0.0224606602956984 1 2.08882330021459 12.3762126136473 0.381388932076371 0.19533246415532
AT1G72520_at 3.98712950602202 3.64306923103129 4.80356309746632 5.35919579393595 2.45732590439328 2.78146036066537 2.33172899865413 2.55005472703988 2.39162739050297 2.37551932632512 2.37511154804157 2.17096702269958 2.05832641747270 2.62408853202647 2.30310976243359 2.18824326093318 2.2769641602655 2.29572221494193 2.44536794786695 0.263057800362643 0.277314466099621 0.268550597782547 0.284535683099749 0.259191723726621 0.267678797242658 0.265362465481150 0.259191723726621 0.265315960919882 0.268702582337598 0.260975885945169 0.259191723726621 0.262156200923134 0.261945499898116 0.264344496794344 0.264156420056768 0.265204214450461 0.263349329751295 0.259191723726621 1 1 + 27315664 27316185 27315945.455 27312179 27316416 + gene protein_coding_gene FALSE TRUE AT1G72520.1 lipoxygenase, putative similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to LOX2 (LIPOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT3G45140.1); similar to lipoxygenase [Nicotiana attenuata] (GB:AAP83138.1); similar to lipoxygenase [Sesbania rostrata] (GB:CAC43237.1); similar to 13-lipoxygenase [Solanum tuberosum] (GB:CAA65269.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) 0.302392866690933 2.65732072581001 0.0224786160529685 1 2.08812255206296 5.83456003727611 0.302392866690933 0.131775693353267
AT1G74670_at 12.0272546999584 12.1894054305979 11.6087684550114 11.6336397695793 12.3135004493139 12.2996163150521 11.4828446228097 11.5279936277135 13.2560728707434 12.3141724788379 13.3945069156449 13.4340033621352 13.4899108885472 13.3164089302514 13.4340444910783 13.4741613231432 12.5503507036494 12.9440041961418 13.3421893714980 0.0791155968074638 0.0762039895894091 0.07846240612289 0.0805638610370424 0.0736782480714702 0.0845987731820206 0.0782558851501806 0.0812924090871455 0.0824239586675508 0.0768424322228241 0.073714320416765 0.0734459397415797 0.0754062847249419 0.078651729811909 0.0768340567759457 0.0734459397415797 0.0784972977793897 0.083249036969963 0.0749639801932157 1 0|1 /|+ 28057268 28057520 28057429.444 28056947 28057810 + gene protein_coding_gene FALSE TRUE AT1G74670.1 gibberellin-responsive protein, putative similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.220434464800056 2.65623602867442 0.0225220028229677 1 2.08643166793354 24.9981206337630 0.220434464800056 0.0295425364665717
AT1G67470_at 4.68535111429455 5.24562142518706 4.3444914582605 4.73461805870683 4.23116865800736 3.83854504874225 4.52864771421284 3.91757217111037 4.0700003903288 3.71730156839607 3.40364175418191 3.38288282345089 3.36481534645225 3.78987740315224 3.33334754402646 3.70690078457588 3.54457490891874 2.98507545801473 3.71627983146481 0.258824606784297 0.261387658821904 0.25479457189243 0.260528652566417 0.256265134795641 0.262580639306884 0.253755378442115 0.259992666503701 0.263153655855875 0.254219798940193 0.256558683601184 0.258093920906994 0.256212765952505 0.254513179109020 0.267455575419 0.254778497399441 0.258500743504095 0.26264602488913 0.257759097307770 1 1 + 25276487 25276991 25276784.273 25275845 25277239 + gene protein_coding_gene FALSE TRUE AT1G67470.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G65250.1); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.351365030410946 -2.65565189114636 0.0225454020492593 1 2.08552111831504 8.07746033918682 -0.351365030410946 0.172505920347515
AT3G58050_at 6.75063012798486 6.77539532488397 6.56967314305604 6.78107088743221 6.98750789801754 6.23990324373975 6.49327218364632 5.86247854878237 5.61261053031973 6.00393455183974 6.49141054706384 6.47546535755894 6.19589272700451 6.86007427503575 6.41160075712918 6.48452027964432 6.13020321777844 6.20444797919239 6.01218829190544 0.243613814180593 0.230188106672271 0.241673518650801 0.236045597442165 0.238429122201920 0.248966347026268 0.241568398957117 0.234289502015162 0.279284336459247 0.228862921068798 0.228094271862450 0.233084045267877 0.229755384728160 0.229295411935051 0.238220400738933 0.247313469860733 0.243801555333833 0.248480736512299 0.240887009132156 3 3 + 21507427 21507970 21507683.909 21503516 21508134 + gene protein_coding_gene FALSE TRUE AT3G58050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41960.1); similar to Os03g0226600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049440.1); similar to Os10g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064024.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK00428.2) 0.352276090633146 2.65549339187188 0.0225517553201660 1 2.08527405499522 12.6989645949792 0.352276090633146 0.173237628655488
AT1G27060_at 3.86615455541816 4.09519751749303 3.99763378594294 4.31553396182092 4.01212246201507 3.72251101210845 4.51982400350058 4.27734901643099 2.90062660832115 3.99149424798181 3.26508706801248 3.07514863495292 3.50244602725411 3.39898476244320 2.96142920653277 3.84656299685359 4.26355382160459 2.71775851711236 4.29086665722649 0.288768725258279 0.2797079205602 0.284107363250614 0.281834229373700 0.284228794948872 0.296900831129278 0.286442735180629 0.292471017465919 0.285674812487697 0.284303095949061 0.280019335537594 0.2797079205602 0.2797079205602 0.2797079205602 0.281982814687795 0.2797079205602 0.287905324423763 0.285268891557739 0.285996982177064 1 1|0 +|/ 9395823 9396631 9396196.556 9395010 9396660 + gene protein_coding_gene FALSE TRUE AT1G27060.1 regulator of chromosome condensation (RCC1) family protein similar to Ran GTPase binding / chromatin binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G12350.1); similar to putative UVB-resistance protein UVR8 [Oryza sativa (japonica cultivar-group)] (GB:BAC07367.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) -0.263236046451452 -2.65544522445954 0.0225536864095013 1 2.08519897362035 7.65405773126905 -0.263236046451452 0.0941821468156787
AT1G21250_at 11.8543881652953 11.9627987378786 12.4057102784235 12.3828063212778 11.2743608853052 11.0229103452475 10.7691599868755 10.7503524038035 11.3373162520005 10.2191708885567 10.6234261932506 10.7138963626611 10.0947537488419 10.9015114771851 9.77457102634474 10.4679157558099 10.5065413979416 11.3014104708178 10.0287407964240 0.0811971651204352 0.0809650361729732 0.081392378925613 0.0844518029094647 0.0820664152295764 0.0831492414978073 0.0837728621636003 0.0803380589033144 0.0858497572289555 0.0852090737782103 0.0821563787014423 0.0839943642588473 0.0850724154085026 0.0863116662944245 0.0836930461890666 0.0820647520752471 0.090852654149363 0.0877474937007367 0.0808602135158944 1 1 + 7441363 7441586 7441521.818 7439255 7442082 + gene protein_coding_gene FALSE TRUE AT1G21250.1 WAK1 (CELL WALL-ASSOCIATED KINASE); kinase cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. Identical to Wall-associated receptor kinase 1 precursor (EC 2.7.11.-) (WAK1) [Arabidopsis Thaliana] (GB:Q39191;GB:O81820;GB:Q56WT2;GB:Q9LMP0); similar to WAK3 (WALL ASSOCIATED KINASE 3), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21240.1); similar to WAK2 (wall-associated kinase 2), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21270.1); similar to WAK5 (WALL ASSOCIATED KINASE 5), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21230.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.228433062939914 2.65525956139385 0.0225611313957678 1 2.08490957127333 22.0910171987302 0.228433062939914 0.047663458933877
AT1G26170_at 5.30987952682603 5.55635195533582 5.6319820740339 5.44049171012 5.40713919172133 5.56126316646754 6.01199316615858 5.88126440356592 5.4680637917104 5.72075850827048 5.1732596628007 5.29079890552153 5.45713884864495 5.45457192484682 5.50292109785286 5.48152338059453 5.63576998813767 5.41446242870614 5.98337026472332 0.198384449553119 0.200925343611427 0.203435877364858 0.205346337227598 0.200320923114263 0.201752310552188 0.198684882730760 0.202944076070404 0.201477794126291 0.201254324762691 0.201228388572837 0.199786166871309 0.203459576206838 0.205675434557945 0.203211763621165 0.195935164403115 0.197674270347819 0.213460219914023 0.201429170992099 1 0|1 /|- 9047526 9048674 9048181.875 9047526 9054425 - gene protein_coding_gene FALSE TRUE AT1G26170.1 importin beta-2 subunit family protein similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to putative Importin 9 [Oryza sativa (japonica cultivar-group)] (GB:BAD68021.1); similar to Os06g0274100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057373.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) -0.238705817991238 -2.65421562723573 0.0226030378858477 1 2.08328238542017 11.1752306332151 -0.238705817991238 0.0643478179698287
AT4G25350_at 2.56251909081303 2.33907297214044 1.90222242184879 2.45454686848514 2.77854451862107 2.32784064057036 1.53085163425755 1.29902597192069 2.34257544843843 1.69497050122731 2.1225420671981 2.18023428539576 1.944571331355 2.15940240239454 2.15720631963460 2.08873813976916 1.97569306781942 2.08321374968468 1.69181261972960 0.211173413288023 0.21423789988155 0.210083645302214 0.207351156551433 0.205879379065219 0.204405869122055 0.209337284716361 0.215399239916263 0.202800318855671 0.207722335564442 0.204397632676764 0.206248158315810 0.207903910486638 0.208100301170725 0.210259451161594 0.205344470346967 0.205946611336385 0.210151242811038 0.207573487625971 4 4|0 -|/ 12963436 12964088 12963823.222 12963392 12966458 - gene protein_coding_gene FALSE TRUE AT4G25350.1 SHB1 (SHORT HYPOCOTYL UNDER BLUE1) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G26730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) 0.306042587853186 2.65350428789816 0.0226316371919418 1 2.08217366251778 4.14869619493456 0.306042587853186 0.135366759094961
AT2G43970_at 10.9768827472155 11.0072392112837 10.9852346489548 10.9038970434219 10.7416129056609 10.5481938670815 10.6014963129054 10.4771682761911 11.3365216506472 11.1812454825262 10.7947907566220 10.7681000748710 10.6145809134635 10.7146386634775 10.4355840961766 10.7795058643046 10.8601255620517 10.7949742734693 11.0836513769830 0.0853265542690035 0.0853265542690035 0.0853265542690035 0.0883625752420097 0.0878829652795872 0.0915992682869658 0.0924521341398834 0.0901950082074701 0.0952703108432954 0.0884479873681554 0.090863482157569 0.0853265542690035 0.0853265542690035 0.087610500131917 0.088648657840178 0.0853265542690035 0.0898834159879052 0.089079862375635 0.0872961498132694 2 2|0 -|/ 18212617 18213515 18212918.4 18212311 18215294 - gene protein_coding_gene FALSE TRUE AT2G43970.1|AT2G43970.2 La domain-containing protein similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96797.2); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Lupus La protein; (InterPro:IPR002344)|similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96797.2); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Lupus La protein; (InterPro:IPR002344) -0.225573665891720 -2.65268661940487 0.0226645556883941 1 2.08089925639694 21.7405958077260 -0.225573665891720 0.0425326351752612
AT1G62520_at 2.50549299066405 3.00572807017691 2.59034270511026 2.83025537241553 2.6397268368803 2.75972521222953 3.24534921595526 3.24904409310006 4.71257366157138 3.74124931525452 3.92187133504311 4.36614757624735 3.30087000337602 4.42759706904843 4.3340488012599 3.43285865179448 3.03912146588276 3.70238635590432 3.7040256864824 0.225967715992152 0.226548082831748 0.227687003123017 0.225421825382165 0.229148431826595 0.230737703342041 0.222881828403150 0.228690247441855 0.223066195532274 0.227951378683137 0.223560740972574 0.227026332354387 0.233333786406984 0.235675465482090 0.232700549947708 0.225265392797391 0.234821139625424 0.228780517093776 0.225173913221795 1 1 + 23148415 23148980 23148644 23148077 23149174 + gene protein_coding_gene FALSE TRUE AT1G62520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G12450.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25627.1); contains domain ADP-ribosylation (SSF56399) -0.266697312299191 -2.65199113540696 0.0226925924478530 1 2.07981532389718 6.78732250127764 -0.266697312299191 0.098231425519608
AT1G62330_at 4.42674315467222 5.25195818795377 3.71268963698038 3.9008571383172 5.20896776159018 4.17082391521287 5.57492635271893 5.49394019085014 4.20320922912105 5.10430880522087 5.08494685716159 5.19169637482351 4.90452699110461 4.81127510193019 4.89289422682607 4.67497399868719 4.25330638116649 4.64790977016976 4.88426718606048 0.236286017026075 0.218636404000324 0.221837817266987 0.221417676569491 0.217403935972713 0.218750722212868 0.217381762892950 0.220513911673043 0.251589507574687 0.221957834552005 0.221386075392416 0.215545703692329 0.21838899132736 0.226329106971416 0.224840546483394 0.215545703692329 0.237952152235762 0.218568015769024 0.222800833070304 1 1|0 +|/ 23052931 23053651 23053259.778 23050558 23053858 + gene protein_coding_gene FALSE TRUE AT1G62330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11990.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37877.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.430730609628698 -2.65146116559677 0.0227139799386712 1 2.07898937410065 9.48675643538753 -0.430730609628698 0.232221579681729
AT3G17240_at 8.92467705787137 8.99476024762268 9.06522708976968 9.27274841734724 9.02423803963626 8.6918212166296 8.7642909222768 8.34677128366168 8.21958177214367 7.83968703588223 8.24825225828957 8.52618295787292 7.63851447710441 8.16890134800015 8.29899500865027 7.91368417830593 8.0814612534396 8.31756060731155 7.54810508582659 0.152570294308161 0.153042333436039 0.153066736321496 0.152149261301960 0.154940562688986 0.152175046193135 0.146847138013944 0.150247862153164 0.159764112238428 0.160946596287938 0.152415580466128 0.146771674218737 0.154567088220806 0.154811368807274 0.151550504820384 0.15135793637253 0.152013932930890 0.155155996685424 0.164603188577119 3 3 - 5890289 5890855 5890561 5889878 5892258 - gene protein_coding_gene FALSE TRUE AT3G17240.1|AT3G17240.2|AT3G17240.3 LPD2 (LIPOAMIDE DEHYDROGENASE 2); FAD binding / dihydrolipoyl dehydrogenase/ disulfide oxidoreductase/ oxidoreductase|LPD2 (LIPOAMIDE DEHYDROGENASE 2); FAD binding / dihydrolipoyl dehydrogenase/ oxidoreductase lipoamide dehydrogenase precursor (lpd2) mRNA, complete Identical to Dihydrolipoyl dehydrogenase 2, mitochondrial precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 2) (Pyruvate dehydrogenase complex E3 subunit 2) (PDC-E3 2) (E3-2) (Glycine cleavage system L protein 2) (LPD2) [Arabidopsis Thaliana] (GB:Q9M5K2;GB:Q8LBH6;GB:Q9ZRQ0); similar to dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) [Arabidopsis thaliana] (TAIR:AT1G48030.2); similar to Dihydrolipoyl dehydrogenase, mitochondrial precursor (Dihydrolipoamide dehydrogenase) (Pyruvate dehydrogenase complex E3 subunit) (PDC-E3) (E3) (Glycine cleavage system L protein) (GB:P31023); similar to ferric leghemoglobin reductase-2 precursor [Glycine max] (GB:AAC26053.1); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027)|similar to dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) [Arabidopsis thaliana] (TAIR:AT1G48030.2); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.267976596412598 2.64947868353724 0.0227941620863199 1 2.07589989047223 16.8947261055549 0.267976596412598 0.0998332463687722
AT1G10770_at 2.15572638807188 2.18393421594991 2.24703576909872 2.06787433797177 2.44423104077133 2.56878630720192 2.35708465315681 2.27412335480711 4.64526086459795 2.23588456612545 2.14617239894458 2.03887273011563 2.26888332271171 2.38231952894003 2.17569135224711 2.34115240146077 2.78988978036168 2.57075250608397 1.75050821736394 0.206630490913975 0.205756838234878 0.203678187530854 0.205061760223881 0.204629345486486 0.208107460881268 0.203678187530854 0.20410608109219 0.222108158808199 0.207997484494005 0.206435867057169 0.205753218210811 0.214002768222215 0.203678187530854 0.206288366597001 0.207775334700881 0.209295414678394 0.211383627521702 0.206941608483695 1 1 - 3591873 3592282 3592076.091 3591634 3592412 - gene protein_coding_gene FALSE TRUE AT1G10770.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G60760.1); similar to pectin methylesterase inhibitor [Brassica oleracea var. botrytis] (GB:AAZ20131.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.224368209661543 -2.64884397846177 0.0228198920761581 1 2.07491083299538 4.89556682603066 -0.224368209661543 0.0406921736572648
AT1G10920_at 3.84221563238224 3.77686455718297 4.51459522004747 5.15728724291004 4.94767826147087 4.3367596771649 3.96107535819133 3.8352409748118 4.30605832086598 4.14995749777523 4.09963222787575 3.98685259763317 4.20063368601758 4.40483979834415 3.30171787522315 4.06342584095152 4.67692725676105 3.82964801206382 4.43621788703932 0.230730515032272 0.217528974227102 0.219726885367391 0.231544631644284 0.218171515188290 0.215340435367071 0.228473897618355 0.222539762098620 0.227823307400543 0.217565579737150 0.213693122978795 0.220912024280993 0.213833242489296 0.218834675717717 0.22008447308555 0.21153920706393 0.237182243062356 0.228870420049775 0.216485557343525 1 1 - 3644594 3645144 3644880.636 3644420 3647768 - gene protein_coding_gene FALSE TRUE AT1G10920.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Putative disease resistance protein RPP8-like protein 1 (RPP8L1) [Arabidopsis Thaliana] (GB:O04093); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G53350.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G48620.1); similar to Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.329139698194083 2.64853435249619 0.022832454272653 1 2.0744283554244 8.48040006406301 0.329139698194083 0.155400737775722
AT4G39480_at 0.650632826188803 0.574377918713512 0.837411586138647 0.89278723305225 0.915394439475796 0.617173521809590 0.78288182037132 0.593135116051125 0.330235497796692 0.436282250009783 0.638560897808478 0.910207015698322 1.16926766942021 0.549228444417239 0.67367834220211 0.9676230638003 0.63801578450569 0.93817514246968 0.73694020321412 0.175056186895122 0.180014459184226 0.181848186486253 0.178001056928342 0.179719837061885 0.177220984338435 0.175056186895122 0.177286209652022 0.195904010178686 0.181499030161278 0.175056186895122 0.175056186895122 0.183042962659826 0.179812143207993 0.178114813766700 0.178161469951763 0.17864556847089 0.183560425735953 0.185251222928802 4 4 + 18363508 18363870 18363655.818 18362252 18364203 + gene protein_coding_gene FALSE TRUE AT4G39480.1 CYP96A9 (cytochrome P450, family 96, subfamily A, polypeptide 9); oxygen binding member of CYP96A similar to CYP96A10 (cytochrome P450, family 96, subfamily A, polypeptide 10), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT4G39490.1); similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A1 (cytochrome P450, family 96, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G23180.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.237438334743968 2.64813738668488 0.0228485700445090 1 2.07380979018388 1.38884790541536 0.237438334743968 0.0633060359539724
AT1G08450_at 11.0145420810946 11.1915874404797 11.2765952304944 11.3572584688886 10.5351908868239 10.3681099452909 8.69758117586186 8.8462126407042 10.4322803828435 9.24749449520672 9.30984127558976 9.6610589689229 9.065939410668 9.26569969474033 9.05184597542191 9.42418084159253 8.81136611513323 9.29987697152737 9.49055884948404 0.125897449410226 0.129262819335076 0.128022777526212 0.126985427267405 0.127140715302211 0.136761486823869 0.126564078787311 0.122435514776014 0.132373228732241 0.125154786100841 0.122435514776014 0.124760527693975 0.122435514776014 0.123242705692089 0.124929444422903 0.12271563290942 0.133206276501205 0.132385399412620 0.122435514776014 1 1|0 -|/ 2668301 2669832 2669064.75 2667822 2671826 - gene protein_coding_gene FALSE TRUE AT1G08450.1|AT1G08450.2 CRT3 (CALRETICULIN 3); calcium ion binding Encodes calreticulin CRT3. Identical to Calreticulin-3 precursor (CRT3) [Arabidopsis Thaliana] (GB:O04153;GB:Q9SJE7); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to Calreticulin-3 precursor (GB:O04153); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE78019.1); similar to calreticulin 3 [Brassica rapa subsp. pekinensis] (GB:AAQ19995.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)|similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to Calreticulin-3 precursor (GB:O04153); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580) 0.229794689597060 2.64756147089262 0.0228719707235716 1 2.07291240011076 19.8907200999769 0.229794689597060 0.0512951570046142
AT1G08065_at 1.12147818917694 1.03680013899313 1.13809158386109 1.33370912665772 0.736594844933407 1.01937008218500 0.803637116862857 1.38443591336283 0.925130869959977 1.42518181552086 0.587536702934082 0.775634301283667 0.486152546327275 0.622266363461897 0.715249409515273 0.879465573217422 0.49287315597813 1.39183422038102 1.50694102689169 0.246022104549728 0.244182364708578 0.247269971181216 0.244182364708578 0.244182364708578 0.249341240656242 0.247440363590257 0.248601939729154 0.25498410342532 0.245968985218201 0.244718800222349 0.244182364708578 0.246677276823117 0.246046969405517 0.245831625366586 0.246653635828549 0.2521960666191 0.251656725865832 0.247732428507133 1 1|0 -|/ 2511807 2512933 2512365.556 2511644 2513451 - gene protein_coding_gene FALSE TRUE AT1G08065.1 carbonate dehydratase/ zinc ion binding similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT1G08080.1); similar to putative dioscorin class A precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD09854.1); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148) -0.285760566754899 -2.64635106668889 0.0229212293112905 1 2.07102643332323 2.08657851030155 -0.285760566754899 0.117718604587880
AT1G23730_at 4.31177214276162 3.92155556095774 5.8797308240853 5.69582551285282 5.26121377113767 5.44695711442425 5.29270967083231 5.22087150116314 5.77055837737113 5.38998399075858 5.65062693642766 4.42156117937412 5.21949680683673 5.01649729870322 4.52703842148842 5.15884853614755 5.89542478603893 5.53372717653273 5.51538085419553 0.222967568032441 0.210548978959238 0.227563797319163 0.220512476313640 0.218596177346833 0.214982455487238 0.209643503842588 0.209555896744147 0.219070759736054 0.207110238753821 0.207110238753821 0.213568996185100 0.207110238753821 0.213344067877513 0.215639753172700 0.208172755471512 0.216241175096326 0.207201069818017 0.207110238753821 1 1|0 +|/ 8396959 8397963 8397512.875 8395546 8398133 + gene protein_coding_gene FALSE TRUE AT1G23730.1 carbonic anhydrase, putative / carbonate dehydratase, putative similar to carbonic anhydrase, putative / carbonate dehydratase, putative [Arabidopsis thaliana] (TAIR:AT1G70410.2); similar to carbonic anhydrase [Solanum lycopersicum] (GB:CAH60890.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) 0.25173307764078 2.64595170292124 0.0229375048238693 1 2.07040419691364 10.4971013706779 0.25173307764078 0.0822239977377215
AT2G03810_at 3.56519668915612 3.83320819634418 4.48241703318919 4.11653188332193 4.62486788375793 4.4275026743105 4.58383345387244 4.04277180039655 3.86837734083541 4.35090968000912 4.53760734859242 4.06877368872208 4.38005604347851 4.05007136558252 4.26832126496613 4.29668133568671 4.19564014205691 4.00728904586166 3.90373942379588 0.204572285667343 0.197899892354236 0.194016443446775 0.196664743016264 0.201129368300009 0.194016443446775 0.197673010827051 0.207879832493489 0.216124161876136 0.207596638147894 0.194016443446775 0.194150400123060 0.194016443446775 0.202287807996438 0.194016443446775 0.195104443040533 0.200614019640698 0.199650778445391 0.199855051986936 2 2|0 +|/ 1163586 1164063 1163928 1161026 1164569 + gene protein_coding_gene FALSE TRUE AT2G03810.1|AT2G03810.2|AT2G03810.3 18S pre-ribosomal assembly protein gar2-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13650.1); similar to Os02g0582100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047250.1); similar to Os04g0467100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053035.1); similar to hypothetical protein SH0040 [Staphylococcus haemolyticus JCSC1435] (GB:YP_251955.1) 0.295561774095401 2.64544484121740 0.0229581777258142 1 2.06961448857643 8.34282312391786 0.295561774095401 0.126862507296185
AT1G76370_at 1.22348960991388 1.29788817207125 1.34706220133296 2.09167196838119 1.06584610473619 1.34112400102804 1.23207579190241 1.48607287466277 2.15200773117603 1.99399818804422 1.14121464702896 1.12618080973083 1.44832488416568 1.25367663280450 1.48129339687841 1.10093497102728 1.22654799486354 1.39657564547630 2.02019085543034 0.173931177750232 0.171270582942478 0.179517335632793 0.17473188952583 0.171003518800044 0.171003518800044 0.173718047081562 0.179506816552713 0.183319717084191 0.178050050429158 0.172669293426652 0.176111114994487 0.172616727733268 0.181537536145955 0.171003518800044 0.178899907651452 0.175605592149464 0.171003518800044 0.182870164454614 1 1|0 -|/ 28653582 28654196 28653874 28653343 28655378 - gene protein_coding_gene FALSE TRUE AT1G76370.1 protein kinase, putative similar to protein kinase [Arabidopsis thaliana] (TAIR:AT1G20650.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT58829.1); similar to Os01g0936100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045326.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.316005422702287 -2.64483973592757 0.0229828817321552 1 2.06867173867350 3.04927511431882 -0.316005422702287 0.144815973639571
AT4G04740_at 3.71171553465538 3.1641197685101 4.23025269335681 4.03026002027457 4.34460922713395 3.57294883967936 4.07670043641491 3.11584121015101 2.76628933536248 2.686719905212 3.2799467482163 2.75760657767614 2.86552660597999 3.12839493162079 2.76910449453173 3.35531947701524 3.098506523046 3.09475487322345 2.65198062904439 0.207427913934327 0.201097167158949 0.217522592871373 0.215101473197753 0.200197038259931 0.206513741013536 0.200197038259931 0.201745841592014 0.212062877805307 0.212837580195195 0.209060926941425 0.205917017105404 0.203675435359928 0.203343379051208 0.204635201053742 0.200197038259931 0.200594343906037 0.201014858101551 0.207155572192832 4 4|0 -|/ 2405404 2406392 2405844.667 2404199 2408565 - gene protein_coding_gene FALSE TRUE AT4G04740.1 CPK23 (calcium-dependent protein kinase 23); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G20410.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to calcium-dependent calmodulin-independent protein kinase isoform 1 [Cicer arietinum] (GB:AAP72281.2); similar to calcium-dependent protein kinase [Solanum lycopersicum] (GB:CAC87494.1); similar to putative calcium dependent protein kinase [Trifolium pratense] (GB:BAE71239.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.434702598359536 2.64417917242552 0.0230098798902599 1 2.06764261687372 6.65346012566534 0.434702598359536 0.235924249542232
AT1G76405_at 4.74648865042527 4.80497092772510 3.98529293032564 4.11365013052428 4.80853376703894 4.1444401741066 5.11690862622969 4.80724742262494 5.07326432038782 4.68705183617275 5.11054170812672 5.54368486204564 4.21773777651306 4.92125042641355 5.44253827711256 5.00558594913043 4.94723566519161 4.70781730857627 5.17033097854823 0.235032125653013 0.228112451025505 0.240966860108122 0.227454545203039 0.227454545203039 0.233024285814901 0.227454545203039 0.231285358640438 0.239686660148421 0.233069360330116 0.236377639853235 0.227454545203039 0.2312496752886 0.227454545203039 0.233462903509717 0.229924508837211 0.227454545203039 0.233984772065945 0.231275539417940 1 1|0 +|/ 28666891 28668541 28667839.667 28666778 28668683 + gene protein_coding_gene FALSE TRUE AT1G76405.1|AT1G76405.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20816.1); similar to chloroplast channel forming outer membrane protein [Pisum sativum] (GB:CAB58442.1); similar to chloroplast channel forming outer membrane protein [Medicago truncatula] (GB:ABE83242.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20816.1); similar to chloroplast channel forming outer membrane protein [Pisum sativum] (GB:CAB58442.1) -0.297879018991627 -2.64366085375829 0.0230310862620678 1 2.06683512790358 9.54790726612922 -0.297879018991627 0.129132424067759
AT4G36500_at 10.4417966486192 10.5758028918433 10.3899611955616 10.6158546329044 10.9524407123265 10.3638456760211 10.1525799675207 10.2296609464074 10.7265829417731 10.2919556605314 10.9527815649662 11.0582091643309 10.6476877038842 11.0170640379360 10.4234851429064 10.7085268080056 10.1501162861691 10.6563482098370 10.0994437398019 0.100305428706254 0.0960111177317493 0.104641930388869 0.0972054914696997 0.0970177110482607 0.10000807257575 0.097530639175479 0.0961646070409184 0.101263765004178 0.0985661015091971 0.101105113354469 0.0960111177317493 0.0962426267377065 0.0968556528347087 0.0997036898830654 0.0960111177317493 0.113774055036048 0.0994894737461372 0.099135880236608 4 4 - 17226147 17226460 17226302 17225915 17226613 - gene protein_coding_gene FALSE TRUE AT4G36500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18210.1); similar to hypothetical protein [Thellun (GB:ABB45855.1) 0.279841012329024 2.64365645328706 0.0230312663846661 1 2.06682827249405 21.0024619066288 0.279841012329024 0.11233515459423
AT3G04490_at 5.70097259317325 6.42207952753609 6.09082133021718 6.20663764257557 6.22691584329942 5.56680233847972 6.27542485268763 6.19351945093244 7.24287070472837 6.78321551393126 6.26140912381891 6.51959266434609 6.35840687618124 7.17447126303418 5.77783343098712 7.05222202460886 5.89049728403703 6.41368237267331 6.97782649381544 0.312662196884460 0.27777734845949 0.27804708263909 0.289118882507673 0.277820413398423 0.293739499829169 0.269419075854337 0.265364119509112 0.272297267209119 0.28974386019581 0.271829609962950 0.275877051188194 0.265364119509112 0.268121531730446 0.265364119509112 0.265364119509112 0.329156376104179 0.281913215116756 0.27060830755769 3 3 + 1209374 1209630 1209521.8 1200648 1209875 + gene protein_coding_gene FALSE TRUE AT3G04490.1 exportin-related similar to Os10g0477000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064853.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK13158.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.347747337485112 -2.64314579817822 0.0230521782749968 1 2.06603274271261 12.8015560060889 -0.347747337485112 0.170953743708548
AT4G37120_at 9.35341338195756 9.52325633368928 9.52358221128574 9.71606542940873 9.68983784937917 9.5610653917111 8.71753091792073 8.93830738896616 9.30049450913031 9.12725471367929 9.2704502977112 9.3185055937178 9.057560459215 9.33766955842473 8.94982582714093 9.5257374154862 9.02978493768829 9.13015919150537 9.23010484227173 0.131172541026218 0.133668432696852 0.139781667406372 0.133949322140071 0.131581406852727 0.133127011201081 0.131892155598990 0.134259287662746 0.138989127196642 0.132780125197429 0.130965315713125 0.133645390612403 0.131344832449387 0.135306962351195 0.136065911685407 0.129530138172778 0.154145321853249 0.136774822716217 0.138628001235821 4 4 + 17488254 17489091 17488705.364 17486641 17489288 + gene protein_coding_gene FALSE TRUE AT4G37120.1 SMP2 (swellmap 2) Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size. similar to SMP1 (swellmap 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G65660.1); similar to RNA splicing factor-Slu7p (ISS) [Ostreococcus tauri] (GB:CAL56848.1); similar to Os08g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060905.1); contains domain Retrovirus zinc finger-like domains (SSF57756); contains domain STEP II SPLICING FACTOR SLU7 (PTHR12942); contains domain no description (G3D.4.10.60.10) 0.236343843281752 2.64063531748907 0.0231552586067973 1 2.06212205153013 18.5887555372756 0.236343843281752 0.0626880848184414
AT1G20450_at 10.2531136792403 10.2976006994071 9.5793551733021 9.68139144412744 10.2578732286754 9.95217742560877 10.4612553983458 10.4915023005228 8.88848292610858 9.42139406774308 10.2392518941909 10.3411471078808 10.2189507379010 10.0730022931748 9.99147156497181 10.5123182969881 9.32019230862285 10.1626210569244 9.09370908494487 0.107244653489605 0.101545920798190 0.11717340428833 0.115563019834094 0.109304069805226 0.113782448573023 0.104801281718812 0.107614409037729 0.114427803136805 0.104667110178175 0.108376175925964 0.108085663825840 0.104028826549238 0.109871768021585 0.106398959452507 0.107002356452092 0.116581986647526 0.106219653573448 0.112353354467297 1 1 - 7088256 7088534 7088398.455 7087993 7089596 - gene protein_coding_gene FALSE TRUE AT1G20450.1|AT1G20450.2 ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. Identical to Dehydrin ERD10 (Low-temperature-induced protein LTI45) (ERD10) [Arabidopsis Thaliana] (GB:P42759;GB:Q8H7D3;GB:Q94AF8;GB:Q94KJ0); similar to COR47 (cold regulated 47) [Arabidopsis thaliana] (TAIR:AT1G20440.1); similar to dehydrin [Brassica napus] (GB:AAR23753.1); contains InterPro domain Dehydrin; (InterPro:IPR000167)|Identical to Dehydrin ERD10 (Low-temperature-induced protein LTI45) (ERD10) [Arabidopsis Thaliana] (GB:P42759;GB:Q8H7D3;GB:Q94AF8;GB:Q94KJ0); similar to COR47 (cold regulated 47) [Arabidopsis thaliana] (TAIR:AT1G20440.1); similar to dehydrin [Brassica napus] (GB:AAR23753.1); contains InterPro domain DNA topoisomerases I, dispensable insert, eukaryotic-type; (InterPro:IPR009054); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.232336006599526 2.64062910394436 0.0231555142995264 1 2.06211237300449 19.7427327189107 0.232336006599526 0.0565428922795589
AT1G66430_at 5.44124707341047 5.12400911973507 2.99437768729961 3.14114463815029 3.78385792614889 2.77815374617544 6.0886567267317 6.0555505002872 3.46688915504234 5.81423894984092 7.11051814129314 8.12364636577368 5.46934273197834 7.0478506517151 7.966948157618 5.83307414597414 4.43299468503486 6.66914127376003 5.14194697381006 0.237479134659015 0.227429613620616 0.233119535844496 0.229178203892094 0.23909295203688 0.235781517824343 0.227429613620616 0.233495546253507 0.240812218913865 0.227429613620616 0.227429613620616 0.230179318530743 0.230896730514139 0.232999373905189 0.227429613620616 0.228542472280272 0.246317361601824 0.238604544771303 0.227429613620616 1 1 + 24783024 24784030 24783379.364 24781934 24784292 + gene protein_coding_gene FALSE TRUE AT1G66430.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51830.1); similar to fructokinase 3 [Lycopersicon esculentum] (GB:AAR24912.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.364492264675956 -2.64025456072803 0.0231709322334862 1 2.06152897137897 10.1205652832629 -0.364492264675956 0.184343216434469
AT3G50530_at 8.26079795321746 8.33552879828328 8.13614882740263 8.02228497638057 8.61266912854864 8.57615193268893 9.1551691255148 9.24763327333204 8.64125030944401 9.2527966627413 8.82144121368193 9.11122142604035 9.27686118047174 9.0517801091992 8.93619072370776 9.1914830422458 9.00022270642431 8.98465183741532 9.3207750349354 0.132551971881885 0.129222083719478 0.140818790129076 0.142695491265987 0.135052597031889 0.134606574236641 0.133478933056032 0.135536443031697 0.144758322424962 0.134434698366525 0.131351706696455 0.129795610774845 0.130160706064905 0.129436908846915 0.137975933190973 0.132800583432184 0.137569388312493 0.138074191289683 0.135510388627335 3 3|0 +|/ 18766615 18767443 18767182.7 18764522 18767754 + gene protein_coding_gene FALSE TRUE AT3G50530.1 CRK (CDPK-related kinase); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase CDPK-related kinase similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G56760.1); similar to CRK1 (CDPK-RELATED KINASE 1), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41140.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT1G49580.1); similar to CDPK-related protein kinase [Gossypium hirsutum] (GB:AAZ83348.1); similar to calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum] (GB:AAL30820.1); similar to CDPK-related protein kinase (PK421) (GB:P53681); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.218922188570147 -2.63951107661313 0.0232015675632019 1 2.06037092646733 17.6024674347236 -0.218922188570147 0.0291805264682718
AT1G32730_at 2.32751677546107 2.49837145672826 2.60659705941814 2.66345383715039 2.4141411309441 2.48683693691956 2.5354838341006 2.68799443694431 2.18725383933835 2.10739243845272 2.80270157365298 2.90564080218395 2.46767150656774 2.48700232489737 2.62889382444028 2.59363061841236 2.43510227379494 2.54304514372245 2.27332120725926 0.191462945901051 0.192937282453003 0.191462945901051 0.192366992030146 0.197981462689843 0.191462945901051 0.193088236101054 0.192019655782273 0.200022857939361 0.197106645593699 0.195367405081401 0.195377183032507 0.1921524573001 0.191462945901051 0.191836875667033 0.195625030686757 0.193746914293953 0.197942996865134 0.200025247025817 1 1 + 11842404 11842894 11842667 11840890 11843237 + gene protein_coding_gene FALSE TRUE AT1G32730.1 electron carrier/ iron ion binding similar to Os08g0129500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060915.1); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450) 0.224527064370859 2.63924904794313 0.0232123740194823 1 2.05996280285753 4.9261911851962 0.224527064370859 0.0427301996031059
AT2G29190_at 5.86734966360874 5.74225294412314 5.96857552772752 6.08739102940527 6.37868064732147 5.91360875543529 5.98194563623423 5.62715061860592 5.20091804338423 5.37150500056238 5.72405653543969 5.48878678725041 5.9539680417653 5.45157840195393 5.34040246288153 5.51471569913355 5.55587467957619 5.34162211417113 5.27888139762584 0.209111737512766 0.206968043669676 0.200528576397097 0.206702991708265 0.211967091858450 0.215466841456508 0.202126850045028 0.205219164452093 0.221417815200310 0.218021415050385 0.210476219623731 0.210443393236339 0.200626261868282 0.201302706049525 0.207430099192818 0.204138672534905 0.210590767378511 0.209878422420121 0.208182395034278 2 2|0 -|/ 12551626 12552341 12551976.8 12550889 12555567 - gene protein_coding_gene FALSE TRUE AT2G29190.1 APUM2 (ARABIDOPSIS PUMILIO 2); RNA binding similar to APUM4 (ARABIDOPSIS PUMILIO 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G10360.1); similar to APUM1 (ARABIDOPSIS PUMILIO 1), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29200.1); similar to APUM3 (ARABIDOPSIS PUMILIO 3), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29140.1); similar to putative pumilio domain-containing protein PPD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89558.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABD33134.1); similar to Pumilio/Puf RNA-binding [Medicago truncatula] (GB:ABE83476.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Nucleic acid binding NABP; (InterPro:IPR012940); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.272498358705015 2.63917955023356 0.0232152410443887 1 2.05985455736209 11.3609412215388 0.272498358705015 0.105540317890284
AT1G64280_at 8.713122722597 8.98458528517105 8.82412497857778 8.9456163926883 8.6215719995161 8.37956275063134 7.46315528864444 7.90530683084844 8.29436080261734 7.51184260241074 8.03311602600478 8.01817213447064 7.7813656270698 7.95077296679529 7.55749744614174 8.03907599203825 8.09715633228469 8.21515599530082 7.74736678993291 0.165888758696752 0.159319724457386 0.152795132136372 0.153883760719500 0.151532419229478 0.165603865348969 0.157776712938344 0.160468078278593 0.161580563272145 0.160712734091537 0.154780386042829 0.152953445671329 0.156028865349756 0.160761891185858 0.163715138322297 0.150745771195111 0.160658544033740 0.169286761036255 0.167789665246399 1 1 - 23857001 23857751 23857329.909 23856411 23859229 - gene protein_coding_gene FALSE TRUE AT1G64280.1 NPR1 (NONEXPRESSER OF PR GENES 1); protein binding This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens. Identical to Regulatory protein NPR1 (Nonexpresser of PR genes 1) (Noninducible immunity 1) (Nim1) (Salicylic acid insensitive 1) (Sai1) (NPR1) [Arabidopsis Thaliana] (GB:P93002;GB:O04742); similar to ankyrin repeat family protein / BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26120.1); similar to NPR1 [Brassica juncea] (GB:ABC94642.2); similar to putative NPR1 [Brassica napus] (GB:AAM88865.2); similar to putative NPR1 transcriptional factor [Brassica juncea] (GB:AAV52267.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.268262749282201 2.6385462559927 0.0232413827950279 1 2.05886819314033 16.3859953460844 0.268262749282201 0.101280387905302
AT1G71400_at 2.27433080882217 1.81838473652418 1.60170936479768 1.26993032502698 2.02899465905263 1.49623644391231 1.24442517417849 1.05970979590082 2.15267917747924 1.89978542381202 1.39314104560622 1.28269613497734 1.65777823272754 1.42941861237964 1.29763172784070 1.22935870127661 1.41896545854380 1.25003253022706 1.90111618615441 0.231015485100546 0.2299254572476 0.228743935548158 0.223467113127712 0.233352311222709 0.242147775517101 0.222377336509773 0.230522443911712 0.228287775669842 0.224975448616337 0.226869944080177 0.223768894713121 0.224146592693480 0.237364918478149 0.232483802186599 0.228828330749003 0.223176772554764 0.236907326493447 0.223094171959587 1 1 + 26915577 26916015 26915815.091 26913497 26916259 + gene protein_coding_gene FALSE TRUE AT1G71400.1 disease resistance family protein / LRR family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71390.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G05360.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05370.1); similar to Cf-2.3 [Lycopersicon pimpinellifolium] (GB:AAX19021.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.307322027180104 -2.63847115848061 0.0232444846745108 1 2.05875122982075 3.27641753082486 -0.307322027180104 0.138001219487547
AT3G50920_at 5.85077719447495 6.0317566985064 5.74223219445258 5.470136397438 5.25280385957527 4.1387216852149 5.13391925759945 4.88226623335844 4.21701124922088 4.57696923044203 3.96170977892695 4.26923379301829 3.66990979059605 3.77477866974834 4.25646387616759 4.24079964355706 4.29565642872446 3.6624619440933 4.63725564681633 0.249480243623324 0.246904464552987 0.255562846432476 0.266482583253346 0.251816934917723 0.266262076996054 0.248832304027354 0.248595822593608 0.256289734389452 0.251792359113871 0.247603805360361 0.249335937233362 0.246904464552987 0.264790190256854 0.257887813664673 0.248428890431596 0.272970905156536 0.247436555577539 0.246904464552987 3 3|0 -|/ 18933419 18934066 18933782.8 18933353 18934697 - gene protein_coding_gene FALSE TRUE AT3G50920.1|AT3G50920.2 phosphatidic acid phosphatase-related / PAP2-related similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT5G66450.1); similar to hypothetical protein [Thellun (GB:ABB45850.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934)|similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT5G66450.2); similar to hypothetical protein [Thellun (GB:ABB45850.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) -0.392204140018514 -2.63805665601671 0.0232616129358802 1 2.05810565591482 9.55955441479271 -0.392204140018514 0.205585593069814
AT3G17840_at 3.10696657029083 2.88654553581123 2.38548968003450 2.90225966415187 2.01858942319995 2.11959537906588 3.32118902516900 3.02595463749250 2.94392274961276 3.28845549927485 3.29480581714285 3.88866816840140 3.04987456749701 3.08499483974265 3.72825627540319 2.81928966251449 3.46429716643668 2.94531868692894 3.10299111255706 0.215513770806141 0.209475759959425 0.211283776609379 0.212054978837254 0.216046095243571 0.213037533132364 0.212661888051246 0.216753860542764 0.211809211774163 0.213320137177554 0.212615197142088 0.20913288695211 0.212157970211049 0.21043015900947 0.208101396307101 0.217143605885731 0.207590515669475 0.210053363652591 0.214138199770279 3 3 + 6107877 6108401 6108074.273 6106034 6108681 + gene protein_coding_gene FALSE TRUE AT3G17840.1 RLK902 (receptor-like kinase 902); ATP binding / kinase/ protein serine/threonine kinase Encodes a receptor-like kinase found at the cell surface of various tissues. Its function remains unknown. similar to RKL1 (Receptor-like kinase 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G48480.1); similar to putative receptor kinase [Oryza sativa] (GB:AAK18840.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.278016022358832 -2.63728081955582 0.0232937059479520 1 2.05689735203760 5.91893770698028 -0.278016022358832 0.111214006943183
AT4G18480_at 10.8635436772542 11.1421938591525 10.4004407420641 10.5106433417749 10.8679889155726 10.4574183905023 11.6500193761319 11.5966854368716 11.6453084568127 11.6868680306556 12.0461273745404 12.2955636724987 11.5081617651335 11.7717044034194 12.2204202145856 11.7116328040834 11.1551968494833 11.5761909683680 11.2999746113533 0.097343623678788 0.0956894039215515 0.0987952896280957 0.0978778692868718 0.099391434957714 0.102288584141183 0.0972080652932838 0.0954930062496709 0.102384491720626 0.095201768323751 0.095201768323751 0.095201768323751 0.095201768323751 0.0999323441370224 0.0955928567104025 0.095201768323751 0.101298952811299 0.102031262353331 0.0961903294779488 4 4 - 10201908 10202442 10202177 10201683 10203480 - gene protein_coding_gene FALSE TRUE AT4G18480.1 CHLI1 (CHLORINA 42); magnesium chelatase Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Identical to Magnesium-chelatase subunit chlI, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) (CHLI) [Arabidopsis Thaliana] (GB:P16127); similar to CHLI2, magnesium chelatase [Arabidopsis thaliana] (TAIR:AT5G45930.1); similar to Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (GB:P93162); similar to Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (GB:O22436); similar to sulfur [Nicotiana tabacum] (GB:AAG35472.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Magnesium chelatase, ChlI subunit; (InterPro:IPR000523); contains InterPro domain Magnesium chelatase ATPase subunit I; (InterPro:IPR011775) -0.256206674816932 -2.6367262176772 0.0233166742632152 1 2.05603363217530 22.6009542788094 -0.256206674816932 0.0884448513267781
AT2G34160_at 6.70687773593048 6.15439206607856 6.44845007765637 6.63147401530866 6.65136301384258 6.47479390240857 6.62340285784729 6.20215359547073 5.7316291688494 5.33589602089052 6.06727701049773 6.22317406258778 6.13198790042962 6.39782953292474 5.84105569436796 5.98697828003389 5.72551635634828 5.3529063587468 5.44420725768309 0.196858344690505 0.190773364108792 0.18898979356685 0.197249216036173 0.196288003239665 0.193336518104973 0.195771056744364 0.190618873615777 0.189672013813023 0.191718802999167 0.191345938501308 0.187665598759237 0.187049884984261 0.187591623309403 0.187049884984261 0.191867380256159 0.194627249411151 0.192334876518048 0.192964151363327 2 2|0 +|/ 14433368 14434202 14433755.889 14433282 14434462 + gene protein_coding_gene FALSE TRUE AT2G34160.1 nucleic acid binding Identical to Protein At2g34160 [Arabidopsis Thaliana] (GB:O22969); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G29250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15498.1); similar to Os06g0602600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058008.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) 0.295871761078358 2.63666057807318 0.0233193941469278 1 2.05593140866448 12.2214891407178 0.295871761078358 0.128033059970881
AT1G01700_at 1.08562504327464 0.775900542049937 1.30152408354470 0.938319793981546 1.43351443634231 1.03640340221344 0.963663289178103 0.674847256518671 1.14394392813769 1.23663165670517 1.26140358974344 1.12024879544152 1.43965853667447 1.39858648089675 1.33536247529849 1.31461258888930 1.40547229176885 1.58256177450427 0.885438953947238 0.194284526848014 0.205650478320049 0.193496067789455 0.193179464865377 0.201363098070431 0.192756959695343 0.199095259935685 0.198396418749212 0.213870299488967 0.201090540076052 0.197460651560294 0.192756959695343 0.197056982753558 0.194494157671946 0.19664460685715 0.192992048550922 0.197665972905774 0.206270242909663 0.201388715853406 1 1 - 259726 260196 259961.909 259495 261474 - gene protein_coding_gene FALSE TRUE AT1G01700.1 ATROPGEF2/ROPGEF2 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor/ / protein binding Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Identical to Rop guanine nucleotide exchange factor 2 (RopGEF2) (ROPGEF2) [Arabidopsis Thaliana] (GB:Q9LQ89); similar to ATROPGEF3/ROPGEF3 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT4G00460.1); similar to Protein of unknown function DUF315 [Medicago truncatula] (GB:ABD32835.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) 0.285499099993633 2.63618442995510 0.0233391335098427 1 2.05518989181265 2.24917964567900 0.285499099993633 0.118508775967071
AT1G32020_at 4.00919632979696 4.43123766304621 4.26762390693596 4.29544708360909 3.42930595110137 3.71783497364773 3.61458320867132 4.15584775467298 4.51988076496107 4.54196423680365 4.29397269483934 3.84949891714037 3.91181320908787 4.15485673432886 3.68073132337758 4.08816219320270 4.34481756856164 4.43105130968435 4.62665607721166 0.281566527528042 0.290904307458594 0.287457655054453 0.285791305621763 0.291146041451011 0.285100927143112 0.27683971536419 0.291230962911413 0.275720007187064 0.291196103950448 0.280913152656915 0.279063969358336 0.275720007187064 0.277656433716904 0.281686265574815 0.275720007187064 0.282818124270589 0.284578883220746 0.275720007187064 1 1 - 11512594 11513010 11512853.222 11512532 11513047 - gene protein_coding_gene FALSE TRUE AT1G32020.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G26030.3); similar to Cyclin-like F-box; FBD; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABD28647.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.296816979718808 -2.63617537335505 0.0233395091234466 1 2.05517578792412 8.31873295232018 -0.296816979718808 0.128935517637257
AT3G11660_at 11.0326006409534 11.3706901287391 11.3831927431487 11.7143364412249 11.5481971696305 11.5489030979642 11.2669127513721 11.4764693558249 10.7028949441855 10.8535416762013 10.8349521867133 10.7219387760758 11.2570523942116 11.0640184936931 10.4391821375337 11.3963191301715 11.1968141222888 11.1538963955193 10.7113815922032 0.0862364950306915 0.083540291866747 0.0854356868123694 0.083540291866747 0.083540291866747 0.0919270762046677 0.083540291866747 0.0856279478396474 0.0878651144091275 0.083540291866747 0.0859874096189359 0.0841140470366175 0.083540291866747 0.0852041299433957 0.0859449040860345 0.083540291866747 0.0893112360354428 0.0867487568060997 0.0859688683810035 3 3 - 3679049 3679588 3679316.636 3678841 3679949 - gene protein_coding_gene FALSE TRUE AT3G11660.1 NHL1 (NDR1/HIN1-like 1) encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive. similar to harpin-induced family protein / HIN1 family protein / harpin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G52470.1); similar to Os12g0159600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066211.1); similar to H0913C04.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86171.1); similar to Os11g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065799.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.25703572204944 2.63502851105347 0.0233871224329800 1 2.05338982531523 22.2996433454685 0.25703572204944 0.0895673029113347
AT1G34300_at 7.83584756496282 8.12093501864164 7.81912557060857 7.62891410887958 8.49148647823887 8.3618059780561 6.40032375096316 6.75689622394743 7.81663085894751 7.3555687143913 7.3775070884904 7.41280383751862 7.28975160698655 7.44523846505249 6.21190449318013 7.70885134515416 7.34675849878105 7.66360572470203 7.60319165725567 0.181359003222601 0.176978049503048 0.181526208942146 0.180220758190748 0.183108941447964 0.174051884696207 0.182019358477029 0.181138305745816 0.176743883142443 0.174411503685449 0.182169861215238 0.184017534928587 0.178468790172394 0.183272690108109 0.184061871606341 0.172426546390126 0.176377025717954 0.172505613404552 0.171635634971471 1 1 + 12505381 12505892 12505677.091 12503384 12506026 + gene protein_coding_gene FALSE TRUE AT1G34300.1 lectin protein kinase family protein similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to Os03g0838100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051835.1); similar to Os06g0494100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057686.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD46526.1); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.256043974967682 2.63472462510733 0.0233997546904000 1 2.05291661318558 15.1263416914613 0.256043974967682 0.0884809080147092
AT4G27080_at 6.29668650706899 6.45028984316772 5.46879565221687 5.50713536059189 6.43276875966576 5.88763811365844 6.53121642613018 6.21246542550998 5.93816974906266 5.65614807605802 5.59058280033689 6.70642901154223 5.47673579205563 6.21413423243346 6.47726673104994 5.37402727224622 4.366694468823 5.26910229563347 5.4883257994651 0.236075031344711 0.231363876722588 0.242667972331797 0.235762448523051 0.239357984080773 0.232008952852858 0.236296500360049 0.238254132478898 0.249730132420097 0.234500617933997 0.231363876722588 0.235005502323664 0.234635433886973 0.244737244649226 0.241922731171122 0.231363876722588 0.252360819640844 0.236605069297655 0.236029592057690 4 4|0 +|/ 13592537 13593288 13592888.25 13589078 13593555 + gene protein_coding_gene FALSE TRUE AT4G27080.1 ATPDIL5-4 (PDI-LIKE 5-4); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL5-3 (PDI-LIKE 5-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G20560.1); similar to thioredoxin-related [Arabidopsis thaliana] (TAIR:AT1G50950.1); similar to Thioredoxin, putative [Medicago truncatula] (GB:ABE91160.1); similar to Os07g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059821.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09970.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) -0.279211522474732 -2.63452463795309 0.0234080716505695 1 2.05260519652495 11.7876675695231 -0.279211522474732 0.112662911056939
AT2G45630_at 4.19858296346117 4.72970197888302 4.46387077531913 5.08610530192235 5.0541880420676 4.95053586893026 4.25030850220860 5.11575173205284 3.47983404195734 3.22015440019027 3.58295500862221 3.53879208420170 4.16558719998076 4.40074408842763 3.62433148260438 3.97423603176681 3.82948312172757 3.5014411345828 3.36655167455458 0.276329425252375 0.278194438597583 0.275469410316507 0.275142327308799 0.278429388806172 0.273282451018625 0.277227043214827 0.276932288010763 0.288392267006617 0.280361651595115 0.27693049155615 0.271925863534588 0.272881633017078 0.280007451368869 0.284712704625514 0.271925863534588 0.292852202937691 0.276214263178306 0.271925863534588 2 2 + 18803082 18803553 18803364.818 18803000 18804163 + gene protein_coding_gene FALSE TRUE AT2G45630.1|AT2G45630.2 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to B0616E02-H0507E05.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67834.1); similar to Os04g0106400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052014.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139)|similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to B0616E02-H0507E05.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67834.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) 0.393385799831797 2.63441718314822 0.0234125416309074 1 2.05243787099144 8.32248546621727 0.393385799831797 0.206870834391407
AT1G35350_at 7.42388414717515 7.7397152472602 7.883109208943 8.14643244434641 8.63129449969097 7.99959915572871 8.32067531168198 8.09484057525828 8.41312410087635 8.25057547616502 8.5414024892125 7.25267644219766 8.04319829844187 8.13966490457566 6.13277996908438 7.12980233192356 7.59033231639784 7.1604165990746 8.47209723191306 0.159171989065337 0.150317523037907 0.155585352387800 0.153160444765435 0.163288983582598 0.159461894420698 0.159470705464250 0.152847986572681 0.168606010476751 0.152562275332418 0.157718378603141 0.161129948665639 0.156966081690340 0.161737858686952 0.179049370254864 0.156519321508257 0.161131370725524 0.161838557595487 0.156461785707181 1 1|0 -|/ 12981451 12981940 12981725.8 12981229 12984561 - gene protein_coding_gene FALSE TRUE AT1G35350.1 similar to SHB1 (SHORT HYPOCOTYL UNDER BLUE1) [Arabidopsis thaliana] (TAIR:AT4G25350.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G26730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.30474238031063 -2.63432742888342 0.0234162759384186 1 2.05229810892496 15.9686353763514 -0.30474238031063 0.136167602925425
AT1G31220_at 5.51871780784953 5.84937641813942 5.75724270829897 6.08232680587114 4.94441687584373 4.91834754614232 4.83458608090768 5.83135715401958 6.0562618706436 5.33328432811464 4.48381469852083 5.1085098503609 5.15535391866983 4.94419333875456 4.99768188942926 4.95118525962702 4.7014842356915 5.32209353963239 5.46409708627492 0.199445848888856 0.200918829590056 0.204106645269073 0.202217748052237 0.190001873325882 0.203796190371669 0.196298591303779 0.196645057130837 0.197402121284293 0.194591837517988 0.200277490950563 0.192832951928101 0.197741187057061 0.193220598051294 0.203680296300107 0.196553475064321 0.192590430846133 0.204269078695251 0.19289545131302 1 1|0 +|/ 11157631 11158332 11157997.8 11156783 11158664 + gene protein_coding_gene FALSE TRUE AT1G31220.1 phosphoribosylglycinamide formyltransferase N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide Identical to Phosphoribosylglycinamide formyltransferase, chloroplast precursor (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) (PUR3) [Arabidopsis Thaliana] (GB:P52422); similar to formyltetrahydrofolate deformylase, putative [Arabidopsis thaliana] (TAIR:AT4G17360.1); similar to Phosphoribosylglycinamide formyltransferase, chloroplast precursor (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) (GB:P52423); contains InterPro domain Phosphoribosylglycinamide formyltransferase, active site; (InterPro:IPR001555); contains InterPro domain Phosphoribosylglycinamide formyltransferase; (InterPro:IPR004607); contains InterPro domain Formyl transferase, N-terminal; (InterPro:IPR002376) -0.37138369243264 -2.63406975101964 0.0234270001309173 1 2.05189686587292 10.7550067678075 -0.37138369243264 0.190300886658282
AT1G23760_at 1.67491495923184 1.90827619060086 1.75523233096068 1.63516589431278 1.30843038626741 1.79773486162999 1.69718563771564 1.97279141525117 2.71100061905630 2.54424915237037 2.12039782317667 2.31011539892121 2.0818073093322 1.94847132643696 2.06511185454542 1.96951896092815 1.89243618965456 2.70669863996912 2.22982490274693 0.233709500837872 0.232340393012809 0.225730611940581 0.230299881963622 0.228176462514477 0.227118992369491 0.229685835959566 0.237818827586340 0.229471879952879 0.227474592462763 0.228020677360048 0.228211110039330 0.230100450392019 0.228996537369855 0.236108285709077 0.227118321419447 0.229430786924721 0.225860802861821 0.225730611940581 1 1 + 8403560 8404065 8403809.182 8402035 8404290 + gene protein_coding_gene FALSE TRUE AT1G23760.1 JP630; polygalacturonase Encodes aromatic rich glycoprotein JP630. Identical to Probable polygalacturonase non-catalytic subunit JP630 precursor (Aromatic-rich glycoprotein JP630) (JP630) [Arabidopsis Thaliana] (GB:P92982;GB:Q9S9K5); similar to BURP domain-containing protein / polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT1G60390.1); similar to BURP domain-containing protein / polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT1G70370.1); similar to Polygalacturonase-1 non-catalytic subunit beta precursor (AroGP1) (Polygalacturonase converter) (PG converter) (GB:Q40161); similar to polygalacturonase isoenzyme 1 beta subunit homolog (GB:AAB39546.1); similar to Polygalacturonase non-catalytic subunit AroGP2 precursor (GB:P93217); contains InterPro domain BURP; (InterPro:IPR004873) -0.273678192963916 -2.63391358182806 0.0234335020367913 1 2.05165368957642 4.03463874912717 -0.273678192963916 0.107273071029693
AT1G77420_at 7.48199788177052 7.69143860741069 7.31261649198744 7.12659237347554 7.53408946222646 6.18896946972117 5.7368614840639 5.46232258626463 6.21922336219993 6.41194583122461 6.88332055070717 7.0761675615615 6.71433875980455 7.23588009295007 6.17060760132768 7.07903090842112 6.07456399830489 6.8210126248093 6.32948643166549 0.222879835769292 0.223393859155865 0.219790341585715 0.228972880768396 0.226219717284461 0.249098427977551 0.217176162218491 0.238273059288963 0.228714351960065 0.219257932825882 0.216276206500952 0.225344255992869 0.224557584558468 0.235588791664321 0.218886644731478 0.219530326352145 0.239052961238161 0.221521433396945 0.225651432844484 1 1|0 +|/ 29099510 29100289 29099970.4 29098393 29100610 + gene protein_coding_gene FALSE TRUE AT1G77420.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G16120.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE93241.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.442029265007162 2.63322226767131 0.0234623054520798 1 2.0505772441242 13.3554029465813 0.442029265007162 0.242473594970130
AT3G25920_at 10.9210185639240 10.9836371592361 10.2065118602354 10.1788450312211 10.6578238271938 10.6487301375964 10.9447347219372 11.2011530295501 11.4662125844699 11.4583174721678 11.5838030544857 11.9079196673090 11.2294719233448 11.4700743011168 12.1194249657375 11.482672112204 10.8402274729748 11.5882387967963 11.2432015363275 0.067797870782059 0.0631665905703397 0.0669454520127157 0.0663749457703405 0.0634268895055585 0.067381129427448 0.0650120563655003 0.0650697935878788 0.0658702649683236 0.0647073418528884 0.0634791962841426 0.064668233930961 0.0642432329796487 0.0648393481476822 0.0670126461518177 0.0637902977896082 0.0723778364739875 0.0636146282361225 0.0647506240830991 3 3|0 -|/ 9492505 9493449 9492853.556 9492296 9493872 - gene protein_coding_gene FALSE TRUE AT3G25920.1 RPL15 (ribosomal protein L15) encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex Identical to 50S ribosomal protein L15, chloroplast precursor (CL15) (RPL15) [Arabidopsis Thaliana] (GB:P25873;GB:Q9LU99); similar to ribosomal protein L15 family protein [Arabidopsis thaliana] (TAIR:AT5G64670.1); similar to 50S ribosomal protein L15, chloroplast precursor (CL15) (GB:P31165); contains InterPro domain Ribosomal protein L15, bacterial form; (InterPro:IPR005749); contains InterPro domain Ribosomal protein L15; (InterPro:IPR001196) -0.225586491087896 -2.63264606864564 0.0234863393606068 1 2.04968007325873 22.1762932418957 -0.225586491087896 0.0459555728089756
AT1G03010_at 0.678766798162757 0.797891586451578 0.415285212101092 0.881138277428241 1.18989465472684 1.00484500935726 0.886401894661886 0.551853228671778 1.10802613620965 1.20856479717874 2.59136684330893 1.66243680349223 1.16610686689223 1.61435841685587 1.64495192030899 1.40970607808246 0.858944377984721 2.10902228813601 1.37717691288141 0.189973105011561 0.194611399645443 0.204024851433138 0.200058165523323 0.194779717429708 0.189632237752442 0.199076358455399 0.194083746704145 0.205374563263486 0.20140965394374 0.190399210906463 0.19809153982289 0.191520538211785 0.202956042314958 0.195674086964002 0.194860148047914 0.199975073409952 0.201622465478178 0.193793489873354 1 1|0 +|/ 695440 696163 695851.6 693480 696382 + gene protein_coding_gene FALSE TRUE AT1G03010.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT2G47860.1); similar to Os03g0347700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050100.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91176.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) 0.27245908102122 2.63142048606573 0.0235375407300777 1 2.04777186682784 2.23244340676482 0.27245908102122 0.106309097663902
AT4G39130_at 1.42758918406730 1.16607769101339 0.952955496847449 1.12620443795061 1.11066779550875 1.03109402263424 1.45867281012660 1.18601292028583 2.01193348083813 1.45609437029338 2.15154889720519 1.06028700882880 1.44575859055071 1.40697596351698 1.48131131143797 1.39928776307700 1.46723792916085 1.40831741642485 1.66005698140466 0.240445265496173 0.240445265496173 0.245356217386680 0.255745197844438 0.241948391433807 0.250879335596383 0.249838301993339 0.247917026680437 0.252524738958283 0.245156131748809 0.250130298765462 0.247021765672406 0.249626213161475 0.244744708419834 0.249573352809607 0.243359118172684 0.253947647762764 0.244497591910498 0.248807802953954 4 4|0 -|/ 18228186 18228784 18228602.7 18228112 18228846 - gene protein_coding_gene FALSE TRUE AT4G39130.1 dehydrin family protein similar to dehydrin family protein [Arabidopsis thaliana] (TAIR:AT2G21490.1); similar to Late embryogenesis abundant protein (LEA protein) (GB:P21298); contains InterPro domain Dehydrin; (InterPro:IPR000167) -0.243064356979055 -2.63059186734374 0.0235722205581391 1 2.04648179231075 2.77588540523961 -0.243064356979055 0.0732327706677695
AT1G21710_at 4.36120436054414 4.62134515665061 4.16188276952805 4.44867992575376 4.96483088337992 4.31069289035919 4.84106944067252 4.80200457993635 4.7053258024237 4.35422617909149 4.25706768503309 3.98825697986461 4.31480241136382 4.33090075215277 3.87201581589188 4.32491246391097 4.39981139980730 4.13173717086556 4.78875352448047 0.225580882152183 0.217422648711926 0.220123405094463 0.216631759589918 0.215044577668604 0.234056475344195 0.216018727150693 0.221208516212963 0.220428672982218 0.217712320749071 0.217174121295766 0.214894122965409 0.213417217356589 0.221728788276427 0.222578221257776 0.212927164966336 0.220554931055984 0.214384823039724 0.218542276669529 1 1 + 7624990 7625737 7625466.545 7624385 7626105 + gene protein_coding_gene FALSE TRUE AT1G21710.1 OGG1 (8-oxoguanine-DNA glycosylase 1) Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme. similar to 8-oxoguanine DNA glycosylase [Populus nigra] (GB:BAF03495.1); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain 8-oxoguanine DNA glycosylase, N-terminal; (InterPro:IPR012904); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.299274008833152 -2.63045680769601 0.0235778779359856 1 2.04627152344055 8.97323371094964 -0.299274008833152 0.13172045474944
AT1G30070_at 5.23793738818802 5.72112461598508 5.26819027713737 5.5660817395192 5.32921128773344 5.53962839442249 6.09631961022848 5.97605812363129 4.27085490018019 4.77199543465676 4.38639051145339 4.13909146666788 4.4689180059933 4.59215897483891 4.35369537314374 4.05180679261936 4.45084226491377 3.81765220095055 4.44549292498975 0.222811931191646 0.228307543001091 0.223171817434062 0.237197586853035 0.22494178358724 0.23006918440436 0.234539811009766 0.228669609541192 0.240872166246522 0.227473670166561 0.223687034816606 0.228449532425459 0.222972965017037 0.233631428282800 0.236305758951511 0.222811931191646 0.223997351650703 0.233102938475630 0.225694275235370 1 1 - 10546810 10547604 10547327.273 10546575 10548135 - gene protein_coding_gene FALSE TRUE AT1G30070.1 SGS domain-containing protein similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT1G30060.1); similar to SGS; HSP20-like chaperone [Medicago truncatula] (GB:ABC75374.1); contains InterPro domain SGS; (InterPro:IPR007699); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.272813490462359 -2.63002496284430 0.0235959760558658 1 2.04559921151002 9.9811608639881 -0.272813490462359 0.106810959745327
AT4G00170_at 6.37441373508854 6.18042184306574 6.27904950047837 6.24330486383202 6.70352976412467 6.29414927633141 6.17674466652207 5.94267025701041 5.77703029086819 5.49350022144323 6.1799899875935 5.78249181973049 5.90771814268335 5.7860592524054 6.19448323426512 5.81564536840461 6.29304453878825 5.60614496541087 5.6679659312732 0.208436548076719 0.206299719326266 0.216264560435260 0.216006322159085 0.213248843356292 0.219052521511193 0.216708464219457 0.220125299165680 0.23541497705169 0.205830885099703 0.202761871350364 0.211333466631307 0.212533926382643 0.209894902253754 0.208922138429098 0.202280318064212 0.205396672945798 0.215984885549046 0.218914899666715 4 4|0 -|/ 70796 71702 71324.333 70477 72211 - gene protein_coding_gene FALSE TRUE AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1), protein binding [Arabidopsis thaliana] (TAIR:AT3G60600.1); similar to Major sperm protein [Medicago truncatula] (GB:ABE80895.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.255488704117629 2.62919850602701 0.0236306501892878 1 2.04431259464918 12.0702168107342 0.255488704117629 0.0884601793833161
AT3G17160_at 6.44924331396927 6.2782723984254 5.6765377367623 5.68889658558965 6.38911520299077 5.96950091864217 6.13988735061481 5.71516968349923 6.1727436599567 5.84052028042538 5.46094539565178 6.30850548263958 5.61048313300006 5.80807749395924 6.3461465209271 5.98724861710658 5.21961265699933 5.71416206353229 6.40387178072472 0.205102650639001 0.208574410706458 0.203693788102223 0.205992772177423 0.212363508445841 0.207607979385393 0.206412596635663 0.201224901344339 0.221367104649086 0.205310921265609 0.210828904797049 0.202730735785370 0.205650208096007 0.207774053161758 0.201969384942440 0.201224901344339 0.213611038085750 0.217417344978428 0.204428425199292 3 3 + 5852258 5852834 5852563.727 5852158 5853086 + gene protein_coding_gene FALSE TRUE AT3G17160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to hypothetical protein 244.t00012 [Entamoeba histolytica HM-1:IMSS] (GB:XP_650128.1); similar to Os01g0332900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042934.1) -0.273389072761447 -2.62899503509641 0.0236391945664920 1 2.04399584221224 12.0112993542347 -0.273389072761447 0.107495372407677
AT1G73410_at 0.273131017236646 0.322057775098077 0.829573406800352 0.82805054618142 0.600513673750576 0.739591146002824 0.723834119224297 0.453882728084754 0.291131565038871 0.816234552162406 0.743152014525862 0.816638611995485 0.973535718277528 0.918491795883067 0.60453225487392 0.515136408144961 0.630097517987342 0.634048069996618 0.623779317674621 0.182944925504295 0.186047637886769 0.184966145274600 0.185939569703209 0.182944925504295 0.182944925504295 0.182944925504295 0.192612496608562 0.192149116951936 0.1912766687723 0.184759587960423 0.197945658797585 0.189718066200037 0.182944925504295 0.185607935578336 0.186554609191668 0.188903612512241 0.182944925504295 0.194326719893994 1 1 + 27605824 27606645 27606101.273 27605293 27606978 + gene protein_coding_gene FALSE TRUE AT1G73410.1 MYB54 (myb domain protein 54); DNA binding / transcription factor Encodes a putative transcription factor that is a member of the R2R3-MYB family. similar to MYB52 (myb domain protein 52), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G17950.1); similar to Os03g0720800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051101.1); similar to MYB transcription factor R2R3 type [Populus tremula x Populus tremuloides] (GB:CAD98761.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.229305676970741 2.62898590856718 0.0236395778893625 1 2.04398163460738 1.24958056517365 0.229305676970741 0.0532301190749051
AT3G12180_at 5.76744649649055 5.99336293266987 6.22421746483183 6.34300072996716 6.75739396548505 5.96705319005736 6.53500725393875 6.51187716294004 4.89383111930244 4.49990655915434 4.61784583356782 5.49156475970157 5.58683663971169 5.42423981649171 4.70166615264114 5.56475733411899 4.51116674329775 4.93673629101813 4.40572516937759 0.232480161284828 0.233069168952725 0.241777577534048 0.228660607776094 0.234561281353544 0.265914722978063 0.226075308281177 0.223122276403953 0.243025217083151 0.235086990733950 0.223122276403953 0.228472921386793 0.229403921214490 0.230699426545257 0.229016176016397 0.228345352186947 0.235358812031974 0.240998906354030 0.231733345376213 3 3|0 +|/ 3883490 3884525 3884165.778 3883369 3884812 + gene protein_coding_gene FALSE TRUE AT3G12180.1 cornichon family protein similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to Cornichon [Medicago truncatula] (GB:ABE94656.1); contains InterPro domain Cornichon; (InterPro:IPR003377) 0.312761811558011 2.62779346318014 0.0236897145829371 1 2.04212536827011 11.1145062223459 0.312761811558011 0.143783458879581
AT1G06410_at 9.73525289006098 9.70196460015802 9.8170822577512 9.8479830528068 10.1196515881708 9.71183941905733 9.79889821977526 9.81351197427005 10.0942133627081 10.0705420978008 10.5988408019639 10.3173738055644 10.6307175804533 10.6510132429704 10.1491562553314 10.5055016417857 10.2981624168182 10.2112369904839 9.98455633614029 0.100960005930020 0.0954639028357724 0.100497460266601 0.100211235380579 0.096114957640437 0.0982080341547655 0.100460112590751 0.0986785289002644 0.102637875282854 0.0972839033299021 0.0994266731564848 0.0951514175904683 0.0953577201026368 0.0990241002036411 0.104079203825387 0.0966863803732178 0.0947846857642586 0.096956267897599 0.098320855440741 1 1 + 1957496 1958126 1957805.909 1955412 1958755 + gene protein_coding_gene FALSE TRUE AT1G06410.1 ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to putative trehalose synthase [Solanum tuberosum] (GB:AAL91978.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.241105950709412 2.62722885039673 0.023713490516598 1 2.04124648172021 20.0532834706585 0.241105950709412 0.0710551778968883
AT2G33360_at 2.52403072494819 2.91443988484959 3.09422782057429 3.07124857260223 3.02074616862064 3.08392154868046 2.73362956639901 2.99603079947739 2.79483162228918 3.53914670717101 3.7171480573181 3.60516650794212 3.47897511627538 3.50759298964072 2.84950835007802 3.56701300370381 3.61998114450679 2.72676905635855 3.14554671238346 0.177432020546457 0.167859278464951 0.170932815017837 0.166777477401161 0.162761833156097 0.171399415843236 0.164888972036873 0.171007862119270 0.180753583461737 0.173194745419934 0.169250560017417 0.169058795977773 0.172318725562431 0.164547014918199 0.177580198242227 0.162761833156097 0.162761833156097 0.178891571925129 0.165251164888517 2 2 + 14149192 14149880 14149481.727 14147057 14150194 + gene protein_coding_gene FALSE TRUE AT2G33360.1|AT2G33360.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04490.2); similar to Os03g0139200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048913.1); similar to Bromo adjacent re (GB:ABE92116.1); contains domain Transcriptional factor tubby, C-terminal domain (SSF54518) 0.24984044065712 2.62599213218859 0.0237656513181480 1 2.03932147335921 6.20171486519022 0.24984044065712 0.0822315436169253
AT2G20190_at 5.67881178134291 5.92193568381629 5.96828425821402 6.0490804179606 6.17205241678384 6.11527414052455 6.15520728834054 6.10150925040525 5.44752429897135 5.58580582275392 6.15555292582658 5.92094292522734 6.11793675508029 6.1051237873498 5.83777079670905 6.02747032267161 5.64291775477356 5.69868172967404 5.76580583372278 0.136122342939545 0.138456412331823 0.142201506988027 0.142633663986252 0.140315398806061 0.142995664534582 0.140484296660856 0.143338539594829 0.147211670372081 0.139886022607881 0.141757378333219 0.139140931789939 0.139809186360633 0.136897197987433 0.142645777024730 0.136320522344158 0.140151591524778 0.138262612678604 0.141232792926304 2 2|0 -|/ 8718960 8725808 8722480.167 8718680 8726099 - gene protein_coding_gene FALSE TRUE AT2G20190.1 CLIP-associating protein (CLASP) -related similar to Mast C-terminus, putative [Medicago truncatula] (GB:ABE89955.1); similar to CLIP-associating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22009.1); similar to Os04g0507500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053263.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.225197223454597 2.6256931368729 0.0237782789843614 1 2.03885609204020 11.7892752095802 0.225197223454597 0.0463529762434053
AT1G73590_at 1.28635255009264 1.56035406942089 1.83712786511401 1.86256147652998 1.86201845589021 1.59002079166456 2.05060542714072 1.87778582054119 2.48117264569631 1.99652460135777 1.72690347454506 1.48827479462327 1.61297496270042 1.61649578212909 1.81464527038724 1.87214669630086 1.48338114838786 1.77380351450433 2.28104427177712 0.214056838219775 0.215239904795076 0.216733570043029 0.211372835919025 0.212827719237230 0.216364820696344 0.210044163801166 0.214332652523179 0.221978063753691 0.212099703163512 0.215032982328197 0.213206591366327 0.215531336898821 0.210289008944051 0.217138775568518 0.212292384046942 0.213118237049052 0.213921247526240 0.211813144717657 1 1|0 +|/ 27665003 27666510 27665649.333 27663334 27666839 + gene protein_coding_gene FALSE TRUE AT1G73590.1 PIN1 (PIN-FORMED 1); transporter Encodes a putative auxin efflux carrier involved in shoot and root development. It is involved in the maintenance of embryonic auxin gradients. Loss of function severely affects organ initiation, pin1 mutants are characterised by an inflorescence meristem that does not initiate any flowers, resulting in the formation of a naked inflorescence stem. PIN1 is involved in the determination of leaf shape by actively promoting development of leaf margin serrations. In roots, the protein mainly resides at the basal end of the vascular cells, but weak signals can be detected in the epidermis and the cortex. Expression levels and polarity of this auxin efflux carrier change during primordium development suggesting that cycles of auxin build-up and depletion accompany, and may direct, different stages of primordium development. PIN1 action on plant development does not strictly require function of PGP1 and PGP19 proteins. Identical to Auxin efflux carrier component 1 (Protein PIN-FORMED) (AtPIN1) (PIN1) [Arabidopsis Thaliana] (GB:Q9C6B8;GB:Q9ZSY5;GB:Q9ZSY6); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT2G01420.1); similar to PIN7 (PIN-FORMED 7), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G23080.1); similar to auxin efflux carrier [Momordica charantia] (GB:AAQ14257.1); similar to PIN1-like auxin transport protein [Cucumis sativus] (GB:BAC41319.1); similar to AEC1 [Momordica charantia] (GB:AAQ14256.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.242588976831152 -2.62461087623187 0.0238240422509037 1 2.03717163160038 3.70409932957811 -0.242588976831152 0.0733337483409641
AT3G57470_at 6.98647106592753 7.0861768181376 6.40517640796026 6.24221190238431 7.67932654707324 7.03751788959649 6.85357975447271 6.16237825078864 6.31467181050351 6.28494096280888 7.0742246691389 7.66053794284695 7.09223180183518 6.73516462507288 7.22476392244414 7.35181007611867 6.48764941593193 7.11878284560586 6.8477676532138 0.208390868330399 0.204365452961745 0.200329872987174 0.207208564838120 0.198465391797418 0.205738577651479 0.201097421808692 0.192726926141205 0.219145768049588 0.204495427283284 0.200907926709670 0.194071882186388 0.197416881325775 0.213842017727191 0.200911987024953 0.193170486027892 0.219342950651707 0.20097529721714 0.194720757216403 3 3|0 -|/ 21281093 21281855 21281455.111 21280238 21286907 - gene protein_coding_gene FALSE TRUE AT3G57470.1 peptidase M16 family protein / insulinase family protein similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT2G41790.1); similar to putative insulin degrading enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAD52843.1); similar to insulin degrading enzyme [Solanum lycopersicum] (GB:CAC67408.1); similar to putative insulin degrading enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAC79699.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.339796117310437 2.62451580311179 0.0238280665614288 1 2.03702366170420 13.5944077318174 0.339796117310437 0.166544461921952
AT1G14390_at 2.06600226554704 1.74581557188254 1.94840925175448 2.07987677862152 1.90629897677846 2.01005852902625 2.36828846265812 2.19453095422460 2.17872407290176 1.80704521785634 2.82883533365368 2.50634005489609 2.31728164398781 2.78670961145529 2.83891793290506 2.59750494421551 2.75074119390794 2.60648614373154 2.21631814674460 0.175317114707234 0.17741138089433 0.182948415634373 0.179313162745675 0.184839790801152 0.174439180218646 0.180372508622018 0.184239308011375 0.18118022112023 0.178552582376786 0.183001739547401 0.179960907877907 0.174574592113166 0.177994606462407 0.186037183420057 0.176016813736166 0.174439180218646 0.176883221574695 0.184982263688144 1 1 + 4926175 4926763 4926512.273 4924272 4926789 + gene protein_coding_gene FALSE TRUE AT1G14390.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G02780.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD32906.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.239620599321823 2.62450295881872 0.0238286102936465 1 2.03700367116053 4.40064239206747 0.239620599321823 0.0693862768079666
AT1G59650_at 5.68690308596513 6.31896664953914 6.25759374002853 6.22205851446697 6.25012046186079 6.10496235787125 5.46117643588259 5.80113174990775 5.57572593702286 5.54179738949584 5.97066988632604 6.23046993903447 5.75363650864103 5.94969728142191 5.54960732575003 5.73244472273394 5.34599852532077 5.3569143985769 5.50686745691335 0.252538615507204 0.252270418163662 0.253529318765353 0.260621931661018 0.243855381078756 0.262769354460073 0.242066166066941 0.244823389053076 0.256614804189653 0.247356546162776 0.24708386284963 0.247777732847576 0.242066166066941 0.250260964106111 0.251800949237483 0.24514179176901 0.267352585546569 0.253262275316488 0.245625980306877 1 1 + 21925519 21926299 21925899.727 21923410 21926588 + gene protein_coding_gene FALSE TRUE AT1G59650.1 CW14 Encodes CW14. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10410.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98316.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.293177758615756 2.62410106890608 0.0238456295277275 1 2.03637818630334 11.6516858334168 0.293177758615756 0.126863066971935
AT4G30470_at 4.25186614257751 4.92003073979316 5.03724726632999 5.68241891154697 5.99237363329966 5.24292794145324 5.99369739038881 6.58963007865782 7.04931846037409 6.75961598123753 8.5910539680957 7.42389010183783 7.77372280665617 8.50253039480149 7.41880004811055 6.84821541999119 6.50240813217544 7.38714529079238 6.46344578631781 0.284306400792547 0.273607154628585 0.267657518190207 0.272110338264050 0.269523137932119 0.299217062351091 0.272480677400250 0.26762259700482 0.269726366393115 0.266805211439612 0.268548440830429 0.264106311605729 0.268513498024917 0.277214719722642 0.262989568330753 0.264968717367416 0.275019619829682 0.281211460776648 0.26293737837013 4 4|0 +|/ 14894851 14896485 14895876.889 14894111 14896821 + gene protein_coding_gene FALSE TRUE AT4G30470.1 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G23910.1); similar to Ribosome-binding factor A [Medicago truncatula] (GB:ABE85146.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.42422327231713 2.62302480383481 0.0238912663547770 1 2.03470319659143 12.6204894361479 0.42422327231713 0.230850964501332
AT3G42725_at 0.426694283874833 0.566759357603186 1.08296963750932 0.753901479266506 0.730419734018606 0.3705034175282 0.705564412810303 0.901001362468354 0.992628605152822 1.05176588300694 0.235345340965495 0.49555496554697 0.249176327137434 0.612930986894201 0.672047970822254 0.796789299897158 0.313321130684821 0.822088645674972 1.34161912035819 0.205821494628723 0.20761188240373 0.209292483638327 0.206672437514718 0.213757175818129 0.205255852164390 0.20600515907323 0.205325800894332 0.205255852164390 0.208955373866365 0.223234616729676 0.206168847507879 0.205639626066598 0.220495582710996 0.215297387322581 0.205255852164390 0.213274326922160 0.215268333673167 0.213334775814718 3 3 - 14854155 14854626 14854420.182 14853888 14854695 - gene protein_coding_gene FALSE TRUE AT3G42725.1 unknown protein -0.259785328247458 -2.62144417352807 0.0239584461795949 1 2.03224343563079 1.51889072878103 -0.259785328247458 0.0940945541850723
AT1G17760_at 5.29584592436701 5.54496029084483 5.03052382302323 5.05971448175473 5.68939220653963 5.20261308825674 5.40980640257955 5.75030912102724 5.22092494580149 5.06460393535342 4.9356633368077 4.73513303857685 5.06169378918901 4.89652169346771 4.44124138482046 5.27053049069371 4.7642120272554 4.93133216478216 5.24932430992176 0.204132373103514 0.211540353614147 0.214816096766254 0.214914070796230 0.209625766173708 0.209132699797851 0.205293222235035 0.212508726246589 0.204021420151922 0.216431321890271 0.204764437708845 0.201425502203592 0.204700406966603 0.208123990171659 0.213345596410736 0.208126897797344 0.206664209524316 0.205849684281094 0.205646525120256 1 1|0 -|/ 6110208 6110967 6110616.7 6110100 6116610 - gene protein_coding_gene FALSE TRUE AT1G17760.1 ATCSTF77/CSTF77 (Cleavage stimulation factor 77); binding Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G04080.1); similar to Os12g0571900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067088.1); similar to Protein prenyltransferase [Medicago truncatula] (GB:ABE83717.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Suppressor of forked; (InterPro:IPR008847); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.276706470568755 -2.62122035954541 0.0239679737702027 1 2.03189515512290 10.4018083611615 -0.276706470568755 0.111590885093530
AT1G06950_at 8.7308201595793 8.55373336071691 8.32869887421543 8.39826188151153 8.43777832547971 8.0617992601811 8.39113549231827 8.2814291934612 7.4968399567583 7.55367441461058 7.21378282633022 7.92709283144708 7.26357485063855 6.53715967007967 8.35077473936407 7.33287767197358 7.1463560432463 7.05360781901903 7.92374347275567 0.218820234434963 0.215008419563382 0.216410730885069 0.212739904596693 0.217967110973579 0.21157492686406 0.213900381903383 0.212765903019474 0.221482228706354 0.225401917527968 0.217984437398407 0.208617406961011 0.209905089604663 0.235414601515437 0.214858865520313 0.215194360297692 0.212336193379741 0.224449217097307 0.213679976885098 1 1 - 2130362 2130943 2130652.636 2130141 2135664 - gene protein_coding_gene FALSE TRUE AT1G06950.1 ATTIC110/TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. similar to Helix-hairpin-helix motif [Medicago truncatula] (GB:ABE84639.1); similar to IAP100 (GB:AAC49399.1); similar to chloroplast inner envelope protein, 110 kD (IEP110) [Pisum sativum] (GB:CAA92823.1) -0.243788803850590 -2.62072391410887 0.0239891204304665 1 2.03112264315948 15.9035766957098 -0.243788803850590 0.0753522366206162
AT1G76270_at 4.00998609851534 4.53669787596235 4.39994563717702 4.56533676918268 4.99477189161235 4.73265177941181 4.86555392665519 4.39437671303098 3.6561154564036 3.52438376763097 4.40764353305404 4.66922139279245 3.50866356516514 4.02115013810674 3.77228791186696 4.29899671446635 3.85948373183416 4.02593141509923 3.89460107372823 0.233093968030947 0.229145008213164 0.227201937720494 0.227036971356343 0.234743541208852 0.230343278734825 0.228365505569031 0.229802909154998 0.231332697077811 0.240106367392162 0.227036971356343 0.233388693043155 0.227036971356343 0.229848105232866 0.234404740928534 0.228595065250608 0.237385373128335 0.233103131762084 0.228186468134453 1 1 - 28618470 28619111 28618748.273 28618101 28621633 - gene protein_coding_gene FALSE TRUE AT1G76270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38390.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20550.1); similar to OSJNBb0078D11.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01922.2); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD10226.1); similar to axi 1 [Nicotiana tabacum] (GB:CAA56570.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.300122533424435 2.61998702084345 0.0240205432165188 1 2.02997601103306 8.44347628621966 0.300122533424435 0.133543318633386
AT4G08850_at 10.1734248947687 10.4211319984606 10.2218019416104 10.2428872774939 9.97495487641593 9.69490370691621 8.11604682210772 8.3958560068492 9.4781363013938 8.32553440617406 8.62842906929179 9.01384606891206 8.11922041093634 9.03509499078883 7.87578726633377 8.72764773857496 7.85345592178338 8.97930761391746 8.56668741478359 0.149563779814301 0.150072682184336 0.155646848161152 0.156909740554618 0.147459237245489 0.154497728578308 0.150498765917537 0.151715516112115 0.155001153259121 0.149704470053239 0.146083009341339 0.142333065320172 0.157430869113309 0.148773270792811 0.148351227116385 0.146178812637025 0.157600763827844 0.15041186021756 0.147494394877447 4 4|0 -|/ 5636726 5637816 5637355.8 5636486 5640633 - gene protein_coding_gene FALSE TRUE AT4G08850.1|AT4G08850.2 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE80260.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82675.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE80260.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82675.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.248000640506364 2.61825177643875 0.0240946985733712 1 2.02727608624691 18.3147349451701 0.248000640506364 0.0808973152679697
AT2G21470_at 4.76959563279377 5.20761153943488 4.54381454482595 4.38009802732208 4.47652939235874 4.33433324792628 4.57938118563548 5.04882723288889 4.26563499754269 4.13750820871017 4.34500771623281 4.4206583625561 4.25052397002658 4.24896907620863 3.82517350591617 4.18924648570328 3.17773938781701 3.67470790236132 3.93619669580429 0.263716469687278 0.254383747820786 0.266108728612993 0.263322375919725 0.254755091677461 0.26183588744012 0.252133487705366 0.256009319368088 0.256770156796987 0.264809030052902 0.253011166093434 0.256143901383183 0.252139203975440 0.252501051564770 0.270802987843626 0.252133487705366 0.281391054495173 0.259658364589680 0.252133487705366 2 2 + 9208621 9209064 9208884.091 9205674 9209553 + gene protein_coding_gene FALSE TRUE AT2G21470.1|AT2G21470.2 SAE2 (SUMO-ACTIVATING ENZYME 2) Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. similar to ECR1 (E1 C-TERMINAL RELATED 1), small protein activating enzyme [Arabidopsis thaliana] (TAIR:AT5G19180.1); similar to Os07g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060130.1); similar to SMT3/SUMO-activating complex, catalytic component UBA2 (ISS) [Ostreococcus tauri] (GB:CAL51670.1); similar to hypothetical protein DDBDRAFT_0187190 [Dictyostelium discoideum AX4] (GB:XP_637463.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain Ubiquitin-activating enzyme repeat; (InterPro:IPR000127); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594)|similar to ECR1 (E1 C-TERMINAL RELATED 1), small protein activating enzyme [Arabidopsis thaliana] (TAIR:AT5G19180.1); similar to Os07g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060130.1); similar to hypothetical protein DDBDRAFT_0187190 [Dictyostelium discoideum AX4] (GB:XP_637463.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain Ubiquitin-activating enzyme repeat; (InterPro:IPR000127); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) -0.282135047206486 -2.61706084887275 0.0241457234070447 1 2.02542322678996 8.73233215116749 -0.282135047206486 0.117276984995465
AT1G73610_at 1.65861625779081 2.23081833952777 2.01576458682607 1.79216937695996 1.39081932824281 1.89412185684220 1.64835677845166 2.07404295666751 2.33257229796972 2.38863649205159 1.85738828485624 1.68923417381904 2.12258318859426 1.75765248904047 1.91391117278659 1.81891370053827 1.46349299486600 2.20752403205858 2.40601316040743 0.199331628601584 0.202949416946923 0.196850158123875 0.196850158123875 0.203880349444437 0.203448429372257 0.206419959719667 0.202453050293691 0.200853726657267 0.204409915090684 0.198685903608321 0.198764075597866 0.208804965367978 0.196850158123875 0.199754774689477 0.202045879503582 0.206873207034127 0.208419911726292 0.200770516338818 1 1 + 27682729 27683418 27683113.364 27682038 27683468 + gene protein_coding_gene FALSE TRUE AT1G73610.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G23500.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88946.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) -0.325821470732332 -2.61665957669630 0.0241629397765213 1 2.02479894930566 3.95287776252002 -0.325821470732332 0.155934851139277
AT3G56700_at 0.740401632649954 1.04324816532729 0.898740427150081 1.40602461649972 0.789271026987615 0.740993446075289 1.01562095651226 1.30055286447531 1.39226182354524 1.65351215271984 0.714558396992782 0.643874800741821 0.926591518655273 0.675814198328809 1.02699806819573 0.660160691175721 1.13961061720469 1.31402365767187 1.08938103946947 0.215545810596469 0.210392324751436 0.216969631766664 0.212273019144053 0.21105414991761 0.208077383200074 0.209071175200588 0.208300751348445 0.207844771801160 0.222084790177098 0.217716199540490 0.212409422499798 0.218463957069119 0.211385388098312 0.210292598081481 0.20752605052572 0.215772448842524 0.210293969833659 0.206563985718103 3 3 - 21010751 21011335 21011125.182 21010710 21013037 - gene protein_coding_gene FALSE TRUE AT3G56700.1 male sterility protein, putative similar to MS2 (MALE STERILITY 2) [Arabidopsis thaliana] (TAIR:AT3G11980.1); similar to male sterility protein 2 [Brassica napus] (GB:CAA68190.1); similar to male sterility protein 2-2 [Brassica napus] (GB:AAZ06658.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) -0.278439768593523 -2.61606563395350 0.0241884448215674 1 2.02387495007879 2.12490114139253 -0.278439768593523 0.113818170544483
AT4G26870_at 8.30151264829891 8.36342059504397 8.05883620127265 7.94109872703785 8.43939243610169 7.99275981518798 7.9727929629905 7.77160355330638 7.83308461328745 7.62106634974803 7.34780418704957 7.34989682385489 7.34427622499558 7.19173940068732 7.57038877699779 7.38473189112665 7.03429437969667 7.48959237963118 8.1021168216936 0.176728617822768 0.183119955547454 0.183793987010532 0.180624854733035 0.180796338624931 0.190757896196004 0.179822469217423 0.181767667638634 0.199757695663212 0.183667133123188 0.191252331479667 0.174711476571539 0.1794211387214 0.185417252376024 0.188343611208365 0.177253361343757 0.197859776218942 0.186368052195469 0.17869176481471 4 0|4 /|+ 13506723 13507596 13507328.5 13505337 13507876 + gene protein_coding_gene FALSE TRUE AT4G26870.1 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G31180.2); similar to Os02g0686400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047770.1); similar to Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) [Medicago truncatula] (GB:ABE93908.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aspartyl-tRNA synthetase archea/euk type; (InterPro:IPR004523); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) -0.253654699290652 -2.61588337299231 0.0241962767862604 1 2.02359141184659 15.7007670021956 -0.253654699290652 0.0878416649141959
AT1G45145_at 10.8931113283158 10.8031818051564 11.001824952672 11.1554083965374 10.0172178603158 9.6326842198955 8.05819503980244 8.06790685716381 7.70598321689767 8.14094555875764 7.02443372722694 7.15405350097699 7.83910828753742 7.54903250359027 7.22758179186394 7.80938599190565 7.92586134474479 6.75194846972216 7.92183259008043 0.178369285002785 0.180977230052332 0.174891907300693 0.178421846161418 0.175733866699299 0.169286329731961 0.169565810614514 0.176855603059545 0.175031870075164 0.166768943529020 0.17579659876732 0.174485709570925 0.171916608132491 0.171077067358802 0.169292928498667 0.166891127344314 0.169145795229297 0.184345797488323 0.167494183330112 1 1 - 17077713 17078659 17078059.727 17077382 17078761 - gene protein_coding_gene FALSE TRUE AT1G45145.1 ATTRX5 (thioredoxin H-type 5); thiol-disulfide exchange intermediate encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. Identical to Thioredoxin H-type 5 (TRX-H-5) (TRX5) [Arabidopsis Thaliana] (GB:Q39241;GB:Q38881;GB:Q9MAJ6); similar to ATTRX3 (thioredoxin H-type 3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G42980.1); similar to thioredoxin h (GB:AAC49356.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.241720173348172 2.61510568951262 0.0242297228865017 1 2.02238162286687 17.6202393862030 0.241720173348172 0.0733465266984508
AT4G25770_at 6.38134175477088 6.24576752005163 6.21457527674366 6.5617088812359 6.33068825512684 6.27211653116863 5.94170045104412 6.49848994891556 6.33314337793835 5.7292356749597 6.34223890519488 5.89929408177179 6.41237675239988 6.38629867470902 6.28184524603853 6.348690723446 6.39400982939168 6.4656627414996 5.4345540057455 0.258472380861624 0.253596244224502 0.278984310547947 0.272865718144784 0.271723537955050 0.265640666924423 0.273869748321026 0.257990760215354 0.263379995674623 0.253596244224502 0.256608981727855 0.259788836515919 0.256727475927261 0.253596244224502 0.256131802469235 0.254548477591230 0.25868162466485 0.257380340597207 0.260473480210206 4 4|0 -|/ 13118486 13119154 13118881.75 13117534 13120123 - gene protein_coding_gene FALSE TRUE AT4G25770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10040.1); similar to Os03g0726800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051137.1); similar to Protein of unknown function DUF676, hydrolase-like [Medicago truncatula] (GB:ABE83409.1); similar to Os08g0143700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Protein of unknown function DUF676, hydrolase-like; (InterPro:IPR007751) 0.280969208565891 2.61484710538496 0.0242408540102803 1 2.02197937246639 12.3801051468093 0.280969208565891 0.116388403264591
AT3G48890_at 8.66918014796936 8.65377358104265 8.5928507631032 8.95005787932987 8.36630258415099 8.4169362250289 8.1804280440856 8.37845320133769 7.21171133385013 7.35356318522493 7.49443654682784 7.67548408060094 7.41068007166157 7.81269369772477 7.79279279250216 7.36955607609651 7.82869710038263 7.32141750798506 7.09183742287254 0.181057178289391 0.175627901068365 0.17644202518561 0.179299182781602 0.172085106831327 0.176728282616837 0.178811425825526 0.175243647693603 0.182560786148796 0.173584039054162 0.169049520145347 0.169764550217303 0.170972898303225 0.178746299012199 0.174385191989888 0.177616246670307 0.175684508959218 0.174876740299243 0.187115573926685 3 3 + 18140772 18142225 18141517.545 18140586 18142558 + gene protein_coding_gene FALSE TRUE AT3G48890.1 ATMP2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3); heme binding / transition metal ion binding putative progesterone-binding protein homolog (Atmp2) mRNA, Identical to Putative steroid-binding protein 2 (AtMP2) (MP2) [Arabidopsis Thaliana] (GB:Q9M2Z4;GB:Q9XFM5); similar to MSBP1 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5) [Arabidopsis thaliana] (TAIR:AT5G52240.1); similar to putative steroid membrane binding protein [Triticum aestivum] (GB:ABB90550.1); similar to Os10g0502600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064993.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.24013026976728 2.61484658585346 0.0242408763793373 1 2.02197856429501 15.9296263273586 0.24013026976728 0.0712707968337905
AT4G39610_at 1.54470953613270 1.49505071627064 1.19350950978072 1.55802800339058 0.97044275490872 1.09754437788848 1.16911290137984 1.45414786753118 2.06804787518257 1.86043646710810 1.46821028788969 1.14609234298225 1.41848844719360 1.33661772650673 1.90674479513440 1.23553389583439 1.50753220624683 1.57129946610276 1.28419235554287 0.196752216876641 0.188679298436567 0.185689105917598 0.192563955039924 0.183510706761430 0.188272519858231 0.186139977084372 0.186794998449398 0.191175113334390 0.186990771900686 0.183510706761430 0.186078085043822 0.188801924388389 0.183510706761430 0.187078595946674 0.183510706761430 0.19461255695417 0.188473774933747 0.188070286699326 4 4 - 18393820 18394373 18394139.636 18393564 18394739 - gene protein_coding_gene FALSE TRUE AT4G39610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21990.1); similar to Plant-specific domain of unknown function 3588 [Medicago truncatula] (GB:ABE89410.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460) -0.249809048563988 -2.61464035788097 0.0242497573838003 1 2.02165776254165 2.90350510604245 -0.249809048563988 0.0834869013906958
AT2G37030_at 1.26441399880938 1.45972972598769 1.40693994050891 1.76496117158974 1.44134007808030 1.39897130550324 1.31679851397238 1.06811273163630 2.15233975067847 1.35519359795936 2.08137096603656 2.41752537472218 2.20810081327898 1.80067650043448 1.82178481471423 1.95869684110360 2.09137706353075 1.68650925112346 1.69829900536264 0.193338377517631 0.193338377517631 0.198250174079814 0.195937412195827 0.196039204852377 0.197278090795807 0.193338377517631 0.194769887083653 0.193815276028805 0.193765965633072 0.201238395883609 0.202333296713609 0.197886354980693 0.198636638600065 0.198393265112754 0.197261170697058 0.193431827702085 0.194706024510904 0.19594045465936 2 2 + 15560814 15561148 15560994.818 15560811 15561185 + gene protein_coding_gene FALSE TRUE AT2G37030.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G53250.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE87816.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.249383566551824 2.61456160113534 0.0242531498129021 1 2.02153525196592 3.26192476048675 0.249383566551824 0.0829881770845975
AT1G30100_at 1.31708910737917 1.06202155898837 1.54871279426975 1.95201567572156 0.823499899119372 0.898312140283602 1.16403813117080 0.917308912348777 1.65530138024251 0.728154454372085 1.78089890012889 1.39951306423116 1.38417152921069 1.34261117804915 1.44151470685027 1.09387473139188 1.34766359359716 1.45782744588424 0.852828028742225 0.208026976209411 0.213064463905854 0.210809620980941 0.21491825384863 0.210318809347209 0.207117650096983 0.212878759966568 0.212370271281394 0.20638275572185 0.214380084907786 0.206012007120796 0.207624008432454 0.209682099829102 0.210256530776248 0.208089003803737 0.205968198736167 0.205533369300945 0.205648305339496 0.210825482213724 1 1 + 10572545 10573093 10572803.818 10571324 10573349 + gene protein_coding_gene FALSE TRUE AT1G30100.1 NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition. similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT4G18350.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to 9-cis-epoxycarotenoid dioxygenase [Citrus sinensis] (GB:BAE92961.1); similar to 9-cis-epoxycarotenoid dioxygenase 2 [Citrus sinensis] (GB:AAY89371.1); similar to 9-cis-epoxycarotenoid dioxygenase 5 [Citrus clementina] (GB:ABC26010.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) 0.258884402879559 2.61448555173787 0.0242564260681929 1 2.02141695331826 2.45276011813694 0.258884402879559 0.09386278970325
AT1G68140_at 8.10698281479512 8.2156282256439 8.45057225407957 8.57583129892424 8.82327143173237 8.80290840953072 7.43111002880636 7.92449622747427 7.7179513810476 7.45239113251534 7.3245139333634 7.19823708581043 7.91638864316204 7.51329732551326 6.77161925588585 7.65510782960284 7.4916593171798 7.3225567066088 7.72492133761172 0.156287406961585 0.156892595376449 0.156924471937798 0.156403170668579 0.157896341486723 0.166030991807367 0.157049549536934 0.159883265743813 0.157044883275063 0.160838224309756 0.159286899845464 0.156910880087065 0.157705839180747 0.160155597327371 0.164842553051812 0.153452713459652 0.156490099791807 0.167799741207524 0.160774631135522 1 1 - 25543124 25543604 25543405 25542650 25545374 - gene protein_coding_gene FALSE TRUE AT1G68140.1|AT1G68140.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77770.2); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.255504709734702 2.61410123625227 0.0242729893016299 1 2.0208191387671 15.8068136509728 0.255504709734702 0.0901444131342061
AT3G04350_at 6.56829705568325 7.15837967715887 7.12003884721399 7.15440595325798 8.09122032637504 7.73162068507276 6.8256089605911 6.72080304956715 6.49691622531668 6.29618980060261 5.93208179096151 6.10440008688331 6.01863984750226 6.67491340262801 5.34872223492229 6.78524883496974 7.16001891982435 6.25116861568061 6.46456210839534 0.189848589318195 0.198470406213916 0.199813494527087 0.194799949362069 0.199170582801427 0.204567813010522 0.190182393761628 0.201227889880398 0.201872564502136 0.19684676979506 0.194655251354685 0.192095859787654 0.192885507651756 0.203351854000501 0.211684156339843 0.188284421716941 0.215511880607281 0.194090130793356 0.195565348634973 3 3 - 1154047 1154548 1154299.636 1153734 1156783 - gene protein_coding_gene FALSE TRUE AT3G04350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18490.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43950.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04090.1); similar to pre-mRNA processing protein PRP39, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93921.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE91890.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE90426.1); contains InterPro domain Protein of unknown function DUF946, plant; (InterPro:IPR009291) 0.285612886231576 2.61196262035494 0.0243653635138997 1 2.01749268354932 13.5231077834199 0.285612886231576 0.121098057292107
AT3G48030_at 1.48646018305233 1.42826871783128 1.44662308063485 1.34658406995930 1.57008525962701 1.45347398290863 1.72177082782113 1.85360054058368 1.92540973186474 2.08019417133017 1.79953720502706 1.86938117709279 1.85475065059399 1.85688115351489 1.92782643199268 1.74351734186222 2.00569568286376 1.62837343100666 2.31241176709935 0.198301287523204 0.209383213670507 0.200782164319888 0.203236236026150 0.205629620261146 0.202518039914781 0.203032074551564 0.204950773649160 0.202748303263210 0.199347506336095 0.199941971032151 0.198301287523204 0.203819719803835 0.199578591500740 0.200602087697872 0.207147500676087 0.204690909971754 0.215628966902507 0.216520375450321 3 3 - 17736455 17736951 17736756.909 17736395 17738939 - gene protein_coding_gene FALSE TRUE AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion protein) (ATL3I) [Arabidopsis Thaliana] (GB:Q7X843;GB:Q9SU66); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G23980.1); similar to RING finger 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36516.1); similar to Os02g0743100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048093.1); similar to Os06g0167200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056919.1); contains InterPro domain Hypoxia induced protein conserved region; (InterPro:IPR007667); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.219296654113410 -2.61093639517472 0.0244098128366946 1 2.01589660543952 3.50923363664011 -0.219296654113410 0.0364530985417213
AT1G71380_at 1.11063839411515 1.19632373541049 1.06499081160186 0.806775552704932 0.783052509122086 1.27928173743093 1.01868898729320 0.575697441750872 0.731154093967613 0.864848705395369 1.39449265055732 1.17255695456112 1.19349798139191 1.67369848079791 1.42847703692692 1.47081498476966 1.80327481751036 1.16874102931048 0.934365500807255 0.186035664108020 0.186072473579852 0.184855188964508 0.184470535592876 0.180681797139377 0.186000192309654 0.185511188621787 0.185326177262528 0.183256021149244 0.188331612021927 0.193264499723726 0.186079038507511 0.191851727156118 0.180681797139377 0.182081282989998 0.181110858325908 0.195093199883771 0.188726864806561 0.192032831400179 1 1 - 26903690 26904243 26903930.182 26903446 26905451 - gene protein_coding_gene FALSE TRUE AT1G71380.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 9 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 9) (Cellulase 3) (AtCEL3) (CEL3) [Arabidopsis Thaliana] (GB:Q9C9H5;GB:P80855;GB:Q38817;GB:Q8LDE8); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G22880.1); similar to endo-1,4-beta-glucanase [Malus x domestica] (GB:AAQ55294.1); similar to Cel9B [Populus tremula x Populus tremuloides] (GB:AAT75042.1); similar to basic cellulase [Citrus sinensis] (GB:AAB65156.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) 0.288963077496994 2.61055601903731 0.0244263085489929 1 2.0153050328497 2.10775631719617 0.288963077496994 0.124371059632261
AT1G04640_at 8.98895220946379 9.17363279466794 8.86085747897541 8.75658481466144 9.40222009876938 8.9834710889213 9.62026229746592 9.25741077637432 9.13247220891364 9.12195345205114 8.93494064660207 8.98003330497128 8.59763987238856 9.00036598119189 9.05694656404898 8.92951437075967 8.99624185816321 8.55477706988668 9.2119687507717 0.110052777020100 0.109565877510065 0.114280631332883 0.113320166582006 0.113529571289785 0.114402631392989 0.110893930789459 0.113687767764500 0.123873960735164 0.113597992612181 0.117147883126079 0.112927111561630 0.119884052507275 0.117815357745681 0.120857410654906 0.111143721031963 0.116810093801832 0.111933581760820 0.117053509106808 1 1 + 1292669 1293210 1292886.636 1292079 1293356 + gene protein_coding_gene FALSE TRUE AT1G04640.1|AT1G04640.2 LIP2 (LIPOYLTRANSFERASE 2) Lipoyltransferase, located in mitochondria but not found in chloroplasts Identical to Lipoate-protein ligase (EC 6.-.-.-) (Lipoate biosynthesis protein) (Lipoyl ligase) (LIP2) [Arabidopsis Thaliana] (GB:Q9SXP7;GB:O23021); similar to lipoyltransferase (LIP2p) [Arabidopsis thaliana] (TAIR:AT4G31050.1); similar to Os03g0321800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049963.1); similar to PREDICTED: similar to CG9804-PA [Tribolium castaneum] (GB:XP_968499.1); contains InterPro domain Lipoate-protein ligase B; (InterPro:IPR000544); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143) -0.266719247285861 -2.61023041648932 0.0244404376424154 1 2.01479865560907 18.1488100761193 -0.266719247285861 0.102671403521842
AT1G44000_at 10.5306369207584 10.6917296632119 10.6150832665389 10.4894182553101 10.8517667584607 10.4110650222765 11.7591041313029 11.623874209066 11.7839470206502 11.6421611336449 12.0088092902591 12.0242271258396 11.4519067442695 11.8472274215326 11.8127571886667 11.8364045607253 11.1886331804982 11.5614214278593 11.5600112936467 0.0895135522072824 0.08640668598354 0.0885932231943181 0.0866851911911059 0.0885596812504279 0.0914931118770572 0.0913427630587749 0.0860810451491566 0.0935715085013342 0.0895128433470787 0.0860810451491566 0.0860810451491566 0.090786971132401 0.0899761936664015 0.0922008923875085 0.0860810451491566 0.0895926734145488 0.0890320817489712 0.0893755436622323 1 1 - 16710644 16711383 16710951 16710508 16712153 - gene protein_coding_gene FALSE TRUE AT1G44000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22920.1); similar to senescence-inducible chloroplast stay-green protein 2 [Glycine max] (GB:AAW82960.1) -0.252559676981286 -2.60979797151246 0.0244592154924182 1 2.01412613094956 22.5608163700841 -0.252559676981286 0.0872593232679246
AT2G44980_at 3.36781402363546 3.15462984514699 2.54835908954678 2.57245587850877 2.48712756134917 2.41590496865452 2.14576650019784 1.89747236998640 2.00691763704399 2.55713094161504 2.00038102522691 1.96223494743048 1.8271222344002 1.77691499054795 1.91288481564433 1.56315317697344 2.33569070437251 1.82100055661739 2.11290346318872 0.210879741478231 0.210853559325329 0.191112610944043 0.193481879326542 0.194716990253690 0.198557441631413 0.191112610944043 0.195223063786173 0.191112610944043 0.191112610944043 0.192735875346714 0.193432135135323 0.196723197632161 0.196111034613655 0.193892656965351 0.196070567579535 0.194410100594536 0.200451004813266 0.193219299100238 2 2 - 18559522 18560344 18559902.091 18559267 18563744 - gene protein_coding_gene FALSE TRUE AT2G44980.1|AT2G44980.2 transcription regulatory protein SNF2, putative similar to CHR17 (CHROMATIN REMODELING FACTOR17), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT5G18620.2); similar to SNF2P [Hordeum vulgare] (GB:AAN14535.1); similar to SNF2P [Triticum monococcum] (GB:AAS58484.1); similar to SNF2P [Hordeum vulgare subsp. vulgare] (GB:AAS58478.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.230593342220565 -2.60972077014315 0.0244625692677165 1 2.01400607151726 4.63647802313703 -0.230593342220565 0.0581089582039444
AT3G15890_at 3.53454150245011 2.92280949948124 3.88349293986472 3.84566616026198 3.87074768422377 3.95056375493299 3.59449353115958 3.7172016467921 3.68747271303324 3.55700053365357 3.45739691882166 3.38153652832268 3.9539217515511 3.9625371207724 3.33181583074996 3.46356079639156 4.27587689863994 3.51475321879581 3.45737682258936 0.19010150895637 0.197386075367101 0.196031437935174 0.190999255519150 0.209624450695512 0.207030561793186 0.201920653158701 0.19560983434304 0.206276496535251 0.19010150895637 0.194703297537096 0.205332834630298 0.191670129434998 0.191096587978132 0.205274783728873 0.192130970574757 0.196292839499759 0.19010150895637 0.197120385742797 3 3 + 5375552 5376016 5375811.636 5374254 5376281 + gene protein_coding_gene FALSE TRUE AT3G15890.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G52540.1); similar to Os02g0186500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046121.1); similar to putative receptor protein kinase PERK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD67605.1); similar to Os06g0166900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056916.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.272873808215177 2.60916785202214 0.0244866023569893 1 2.01314621777411 7.28241870961132 0.272873808215177 0.109048442840679
AT3G08920_at 9.03962866564167 9.28792601718116 8.43079321387479 8.5029811921897 9.41135949503973 9.1372279015483 9.60632562748696 9.59065357614694 10.0757173902776 9.85356776686404 10.1911544755997 10.1199589855133 9.72951899003086 10.0398159895261 10.1113806841972 9.58949355043157 9.6860999831787 9.67428663863272 9.6285542635469 0.127584419894899 0.128235476315187 0.138462547834891 0.141602571117543 0.118375328906516 0.138527405125396 0.127541828648649 0.124654767526865 0.126699141698060 0.122836249041764 0.12121039172743 0.120225043532176 0.123210037341724 0.119968391419982 0.125954383841391 0.119888194720039 0.134000710943883 0.122767835005883 0.127180599227792 3 3|0 +|/ 2712355 2713089 2712622.5 2712242 2713275 + gene protein_coding_gene FALSE TRUE AT3G08920.1 rhodanese-like domain-containing protein similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42220.1); similar to Os09g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062759.1); similar to Os03g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049793.1); similar to Os02g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047318.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.235221249520887 -2.60838783945808 0.0245205459363333 1 2.01193324953360 18.9985253623228 -0.235221249520887 0.0652708471942704
AT1G79810_at 6.62175345024442 6.76138498336212 7.30317728146753 7.25996165309896 7.39613930384882 7.07285174880076 7.4285888863936 7.05162006416826 5.72017357706741 6.1032573478263 6.31095058816859 6.36064047474914 6.31266630633454 6.28420675121389 6.48737417374116 6.66857336814897 6.16542544671097 6.18689513752209 6.5678487606523 0.178845932908649 0.178041878146593 0.178722586862205 0.176659105276313 0.179048065141932 0.182076774011276 0.180787126424673 0.182334922114638 0.193531371553831 0.189279167623110 0.177911117931670 0.176659105276313 0.183172564134265 0.181657827026761 0.188616326076335 0.177493450930540 0.191397077302931 0.185367565195658 0.179359694798807 1 1 + 30025462 30026997 30026181.909 30024637 30027379 + gene protein_coding_gene FALSE TRUE AT1G79810.1|AT1G79810.2 TED3 (REVERSAL OF THE DET PHENOTYPE); protein binding / zinc ion binding Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes. Identical to Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p) (PEX2) [Arabidopsis Thaliana] (GB:Q9CA86;GB:Q8LFI7;GB:Q9M9Z9); similar to Zinc finger, RING-type; Pex2 / Pex12, N-terminal [Medicago truncatula] (GB:ABE85545.1); contains InterPro domain Pex2 / Pex12, N-terminal; (InterPro:IPR006845); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.254430309868457 2.60815323400185 0.0245307642730651 1 2.01156843360522 13.3506937177592 0.254430309868457 0.089585652903824
AT3G06080_at 8.42751600711376 8.59279011041038 8.51143353428488 8.38357124650667 9.17148464730863 8.84714107021866 9.10442624792525 8.99316341648483 8.42310544503885 8.68963678406188 8.9359852447347 8.3570306101038 8.56845700610575 8.25981497254364 7.968416508431 8.2806070022457 7.98898460127227 7.56237213242926 8.88375709856142 0.137437224882600 0.135775394914300 0.138748392339951 0.134017819524890 0.146142451832266 0.142914506739455 0.142004453439532 0.141443800397752 0.144708891129149 0.134017819524890 0.134017819524890 0.134092630821174 0.142682614333787 0.148676552147408 0.144458018000636 0.136766329981047 0.142268571251882 0.150265538010867 0.134017819524890 3 3 - 1835481 1836089 1835828.636 1834713 1837990 - gene protein_coding_gene FALSE TRUE AT3G06080.1|AT3G06080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19160.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91480.2); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.238178793528979 -2.60788213664971 0.0245425772622733 1 2.01114687797308 17.2067949278420 -0.238178793528979 0.0694901142630949
AT1G04480_at 9.45150563660302 9.55754394497732 9.25435248156335 9.29607721948422 9.68564844204707 9.23014358516872 9.68631173581335 9.54288538711817 9.03710604854033 8.81591674986677 8.71293888427766 8.9107318790593 8.5530237501404 8.67178185678452 8.98697438097866 8.63718311769935 7.99492106232434 8.49586968621856 8.93162292267278 0.132364657468116 0.133930602852138 0.139550432455316 0.137957115800611 0.140868599471698 0.138396812837082 0.141786374613809 0.135925251781983 0.138683468315174 0.134105000094255 0.137324414318106 0.132093090672041 0.130458921075936 0.134115704924795 0.138507681067126 0.131821712586061 0.149866509850034 0.135894215654570 0.130458921075936 1 0|1 /|+ 1216293 1217227 1216622.5 1216094 1217458 + gene protein_coding_gene FALSE TRUE AT1G04480.1 60S ribosomal protein L23 (RPL23A) Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to EMB2171 (EMBRYO DEFECTIVE 2171), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04400.1); similar to 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana] (TAIR:AT2G33370.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) -0.250396703618369 -2.60776940187637 0.0245474912998835 1 2.01097157757153 18.2373802128696 -0.250396703618369 0.0849627674349419
AT3G62120_at 9.65821870908221 9.82125699889423 9.30401012342274 9.37578118343017 9.55610296397862 9.49993567856953 9.54895001242118 9.47795894745678 9.59908066240002 9.53581949266606 9.42824031840159 9.6253615438401 9.27938505212293 9.28127793410137 9.52025039343146 9.1683860403605 8.86648843731855 9.29754234658401 9.52184856889767 0.128056170128874 0.122306547454231 0.130036654692233 0.120815324094259 0.122453492003178 0.124844129739093 0.124073141180468 0.122549202890870 0.134362380489407 0.124355771197683 0.122811907875379 0.123231492378189 0.126180821468415 0.125565448147042 0.122992544111273 0.122085928414038 0.128804507657369 0.121525245908298 0.123709068424543 3 3|0 -|/ 23012372 23013071 23012795.4 23012005 23015296 - gene protein_coding_gene FALSE TRUE AT3G62120.1|AT3G62120.2 tRNA synthetase class II (G, H, P and S) family protein similar to OVA6 (OVULE ABORTION 6), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G52520.1); similar to Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97739.1); similar to Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97740.1); similar to tRNA synthetase, class II (G, H, P and S) [Medicago truncatula] (GB:ABE81883.1); contains InterPro domain Prolyl-tRNA synthetase, archael and euk type; (InterPro:IPR004499); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Prolyl-tRNA synthetase, class IIa; (InterPro:IPR002316); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.218260872998925 -2.60766292697049 0.024552133365288 1 2.01080601214657 18.9605848686193 -0.218260872998925 0.0345793636875539
AT2G39090_at 3.92631114245343 3.72413275435926 3.73954746779732 3.44550477669986 4.51963406931908 3.81407569950583 4.30546607588483 4.15196891153208 3.81836530835945 4.00538552541767 3.86904910639390 3.33755768703367 3.33616628769598 3.66313349704008 3.32880070482914 3.24838755470382 3.27291811359329 3.16842802947912 3.77504581394336 0.243203538078683 0.245745178933768 0.238564860414761 0.239391698165388 0.257343904920329 0.25089641563197 0.24101453670715 0.243703417205460 0.251289310658375 0.238564860414761 0.241367782286734 0.247301073819275 0.240636070377431 0.247215941150238 0.242769628195522 0.242877641587834 0.242895060340741 0.247326581936408 0.248933981511975 2 2 - 16320188 16321004 16320558.182 16319760 16324378 - gene protein_coding_gene FALSE TRUE AT2G39090.1|AT2G39090.2 tetratricopeptide repeat (TPR)-containing protein|binding similar to APC8 (anaphase-promoting complex/cyclosome 8), binding [Arabidopsis thaliana] (TAIR:AT3G48150.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44035.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to APC8 (anaphase-promoting complex/cyclosome 8), binding [Arabidopsis thaliana] (TAIR:AT3G48150.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44035.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.305244822185457 -2.60713697936225 0.0245750762025149 1 2.00998819300868 7.5879904481121 -0.305244822185457 0.139382742413853
AT4G02610_at 5.64928474079852 5.90427497758514 6.15271452260585 5.90793257665406 6.64071146245579 6.14122343764875 5.76851392990524 5.49230509920105 5.36458310004264 5.66422986643663 5.5860711321941 5.5100052445008 5.94749266773111 5.55874848654536 5.60000012100875 5.3319972532435 5.47752647024366 5.56163464249506 5.5279106498067 0.209960662261604 0.202801431846523 0.210952172614428 0.203978268318308 0.20273266993709 0.2175119776588 0.215428899401676 0.207112732382597 0.222946337245369 0.200577123252938 0.215098004770102 0.201427491583596 0.201810730801236 0.203805071951198 0.205141328641136 0.202804503912499 0.21003941788172 0.209274960004392 0.200129023017274 4 4|0 +|/ 1148079 1149190 1148679.8 1147634 1149336 + gene protein_coding_gene FALSE TRUE AT4G02610.1 tryptophan synthase, alpha subunit, putative similar to TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN), tryptophan synthase [Arabidopsis thaliana] (TAIR:AT3G54640.1); similar to Os07g0182100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059049.1); similar to tryptophan synthase, alpha subunit (TSA1) [Isatis tinctoria] (GB:CAH56477.1); contains InterPro domain Tryptophan synthase, alpha chain; (InterPro:IPR002028); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Triosephosphate isomerase; (InterPro:IPR000652) 0.279913721559298 2.60702540802886 0.0245799458757082 1 2.00981470888281 11.5024162805271 0.279913721559298 0.116181151325542
AT4G22270_at 3.4829620773567 3.59797402019267 3.77865190137454 3.43288825568703 4.30996679118358 3.55094619352398 3.55510002559999 3.25774830209384 2.62572629989659 3.23594482862884 3.48247881609412 3.3777914874535 3.58949745447003 3.57237279172073 2.70120418474066 3.41140433893633 3.75583999547145 3.16749602222722 3.23158019063896 0.230550711352245 0.224841373651187 0.223116355488151 0.235373046377536 0.225916300937906 0.229319924145928 0.225637731093797 0.230706864708066 0.236438300741655 0.224947863211394 0.232993050125933 0.226356177588000 0.229295773779582 0.23261991870045 0.223935536568041 0.228264177173409 0.250356856388153 0.226512601540345 0.224311438247925 4 4 + 11774988 11775651 11775342.364 11773340 11776051 + gene protein_coding_gene FALSE TRUE AT4G22270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03820.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1) 0.322922021232969 2.60694224110633 0.0245835764214928 1 2.00968539194666 6.82745190059857 0.322922021232969 0.154524400121209
AT3G06860_at 7.60385772838896 7.81729590911367 8.29218105903648 8.22405026748201 7.92868834437096 7.74750366865336 7.6997793644207 7.76482598980341 6.98309705578709 7.04333616626971 6.87955193005806 6.37592107327867 7.24842645671202 7.3439941932909 6.57266889704281 7.22675704125947 7.3459769184262 7.10966106192607 6.63516713354312 0.200475661864583 0.189292391577992 0.195570312851041 0.195206729550770 0.194275918968703 0.207283835759650 0.189292391577992 0.201111833193397 0.216006353669214 0.195846498579407 0.196790512617262 0.200559923790424 0.194896653903672 0.196658522594889 0.199106008077744 0.190156366408139 0.193927310415707 0.211381428943266 0.198128686551929 3 0|3 /|+ 2165029 2165991 2165491.2 2161875 2166355 + gene protein_coding_gene FALSE TRUE AT3G06860.1 MFP2 (MULTIFUNCTIONAL PROTEIN); enoyl-CoA hydratase Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. similar to AIM1 (ABNORMAL INFLORESCENCE MERISTEM), enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT4G29010.1); similar to Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase ; 3-2-trans-enoyl-CoA isomerase ; 3-hydroxybutyryl-CoA epimerase ; 3-hydroxyacyl-CoA dehydrogenase ] (GB:Q39659); similar to Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase ; 3-2-trans-enoyl-CoA isomerase ; 3-hydroxybutyryl-CoA epimerase ; 3-hydroxyacyl-CoA dehydrogenase ] (GB:O49809); similar to protein MFP-b [Cucumis sativus] (GB:CAA55910.1); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, C-terminal; (InterPro:IPR006108); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; (InterPro:IPR006176); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase; (InterPro:IPR006180); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) 0.226167832459991 2.60692258268732 0.0245844346619769 1 2.00965482499535 14.8348076989250 0.226167832459991 0.0511190154729075
AT1G67570_at 2.22753682466 2.15716899457483 2.38438977961265 1.86202193307791 2.63748651304402 2.58061578029704 2.26834341554034 2.01450026108798 1.49053444791326 1.86715080802434 1.79540265734431 2.25085829997845 2.12749886268663 2.08035548865525 1.91662557872377 1.88342353369841 1.66705338468329 1.69642205826904 1.42902782228905 0.224447333443686 0.222412939852672 0.227141030459334 0.228445058533297 0.223918231231449 0.233745375504664 0.22444882776854 0.233574583338482 0.228892134587923 0.222412939852672 0.229058793033673 0.225625342404888 0.226640646932946 0.228512234764291 0.231695098182979 0.228236253034476 0.225771532354792 0.236104135823073 0.224890052114826 1 1|0 +|/ 25329851 25330543 25330144 25328823 25330921 + gene protein_coding_gene FALSE TRUE AT1G67570.1 similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1); similar to Os06g0635200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058140.1); similar to Os08g0128200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060909.1); contains domain Ubiquitin-like (SSF54236) 0.26543754223573 2.60663650824282 0.0245969273472786 1 2.00921001051268 4.02789594227707 0.26543754223573 0.101718820698414
AT2G01390_at 0.9075108440202 0.89494888730263 1.48557079950887 1.1894382370997 1.24426772968266 1.20742551878768 1.13683917008514 1.14238362166642 1.35487908293169 1.75840814102151 1.51287771520056 1.46150510226843 1.33637720973375 1.54696415068409 1.38041538908875 1.17966021572097 1.67590449871066 1.52182742164933 0.66754897562928 0.213998025746462 0.208832124501869 0.218083736626483 0.212677641594365 0.207823897528027 0.211399246291615 0.210710474748652 0.207768299479822 0.216289308743556 0.208912756327390 0.209492501209448 0.209865327967849 0.207768299479822 0.207768299479822 0.221198269021815 0.213522572672723 0.208364946657029 0.209773665501668 0.216368593829381 2 2 + 172402 172903 172598.6 172255 174136 + gene protein_coding_gene FALSE TRUE AT2G01390.1 pentatricopeptide (PPR) repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01360.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81424.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.226458835094519 2.6064980364979 0.0246029765679053 1 2.00899470462533 2.50715819905728 0.226458835094519 0.0516968438579035
AT1G03520_at 5.10921647814138 5.41688897942283 4.81025051633255 4.84673926717425 6.85241247424959 5.91183687257552 6.18248411699789 6.06893346742162 5.94407897495649 5.95100358111549 5.62873900873646 5.55478227941042 5.78137587962055 5.9809687391007 5.20031560447578 5.49905293406519 4.76947655455631 5.93849823064685 6.53898883790469 0.198408608261262 0.196994695505032 0.202863709762636 0.193492812183639 0.196638361447531 0.213786652617182 0.203398741123073 0.195086957620678 0.209555142395040 0.197451942700822 0.197381688850168 0.196195754665256 0.197275783816867 0.200121713312429 0.196562105595110 0.199284130333934 0.204079488397545 0.206650754614846 0.194135607875669 1 1|0 -|/ 877979 878560 878248 877863 880159 - gene protein_coding_gene FALSE TRUE AT1G03520.1|AT1G03520.2 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G03340.1); similar to Os08g0143500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060977.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); similar to Os12g0639700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067391.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406)|similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G03340.1); similar to Os08g0143500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060977.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) -0.344805144372654 -2.60615209027213 0.0246180958497597 1 2.00845680963951 11.4942660807822 -0.344805144372654 0.172497396635434
AT1G21890_at 0.630390956969766 0.78178032864052 1.22475003857057 1.03790676734048 1.0659480079238 0.831511727823075 0.819511810323057 1.02067857970274 0.90804083703662 0.60397578370454 0.894724306112914 0.902179936361798 0.70692466593422 0.721157807736797 1.11729681495920 0.870975977195579 0.987712638794387 0.844133954507387 0.390357829777313 0.192358882487925 0.194848221142915 0.198816366118641 0.206924996557622 0.196103823623143 0.207184148752682 0.194710461662965 0.194708567206899 0.197440461858597 0.205426276684537 0.202306181031034 0.199082993282231 0.207941882261503 0.195375930825291 0.198630806661532 0.193231718870985 0.192358882487925 0.192358882487925 0.193693030931751 1 1|0 -|/ 7682974 7684091 7683699.778 7682573 7685651 - gene protein_coding_gene FALSE TRUE AT1G21890.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); similar to Os02g0768300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048238.1); similar to Os06g0210000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057111.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.236726081183127 2.60574306716933 0.0246359836787983 1 2.00782085282568 1.68394131693164 0.236726081183127 0.067747660369983
AT1G33360_at 3.92013533350575 3.62898385414269 3.8053601721924 3.80110966176291 3.97658667631286 3.92025536711169 3.17208278701739 2.68296066043825 3.0632034649812 3.20142863119536 3.34809621989033 3.36870207777986 2.51206327623045 2.75107667693116 2.97129295638442 3.20548855301364 3.11858939922893 2.92696385859596 2.80917768477675 0.211294954435201 0.203457207255395 0.209092375014571 0.201957282415879 0.207181204388095 0.202899236208520 0.2103017169035 0.202549807952439 0.201466764310685 0.205417018104735 0.205386678483076 0.203212411197726 0.219581074425529 0.205024441676897 0.202256600773130 0.207748418396890 0.205806675830429 0.204746204426392 0.202590817489093 1 1|0 +|/ 12094617 12095544 12095044.9 12091857 12096005 + gene protein_coding_gene FALSE TRUE AT1G33360.1 ATP-dependent Clp protease ATP-binding subunit ClpX, putative similar to CLPX (Clp protease regulatory subunit X), ATPase [Arabidopsis thaliana] (TAIR:AT5G53350.1); similar to ClpX, ATPase regulatory subunit [Medicago truncatula] (GB:ABE78698.1); similar to putative ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) [Oryza sativa (japonica cultivar-group)] (GB:BAD15818.1); similar to Os02g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047160.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ClpX, ATPase regulatory subunit; (InterPro:IPR004487) 0.262734088754008 2.60550828026705 0.0246462574191627 1 2.00745580827311 6.6383780078478 0.262734088754008 0.0989898274658234
AT2G28520_at 3.95810091626443 4.24598455898828 4.0319861747285 3.89265250735108 4.52675827429525 3.59697452792481 4.47379038691250 4.20945625452273 3.62423514292398 3.59244570342943 4.53638262892589 4.81497565809911 4.74838296560177 4.72193030177517 4.85161822533941 4.56975323972788 4.49841150267303 3.84964602338572 3.77961409864422 0.222091423268318 0.212690475448959 0.226252125120583 0.22483085898525 0.216765109461829 0.24348543372394 0.217786528704205 0.218806845575093 0.225061382879001 0.227431821380368 0.221013985989892 0.218596448744670 0.212674173660336 0.232712982503700 0.221379342119031 0.221784768098227 0.230064243886553 0.217155198674568 0.223421032957256 2 2|0 +|/ 12221829 12222574 12222203.778 12216973 12222972 + gene protein_coding_gene FALSE TRUE AT2G28520.1 VHA-A1 (VACUOLAR PROTON ATPASE A 1); ATPase Vacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network. similar to (VACUOLAR PROTON ATPASE A2), ATPase [Arabidopsis thaliana] (TAIR:AT2G21410.1); similar to VHA-A3 (VACUOLAR PROTON ATPASE A3), ATPase [Arabidopsis thaliana] (TAIR:AT4G39080.1); similar to V-type ATPase 116kDa subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB46970.1); similar to putative vacuolar-type H(+)-ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD73785.1); similar to V-type ATPase, 116 kDa subunit [Medicago truncatula] (GB:ABE81569.1); contains InterPro domain ATPase, V0/A0 complex, 116-kDa subunit; (InterPro:IPR002490) 0.349357880880693 2.60549282988124 0.0246469336410815 1 2.00743178632036 8.23662255838521 0.349357880880693 0.176198307494128
AT1G26740_at 5.46603640555716 5.64084448964492 5.23410765459638 5.14241900670998 5.19355840426751 4.94872027401028 4.71749348711152 4.52058025908941 4.25816999111357 4.28742418319341 3.08729115373122 3.33668775641388 3.27593600185025 3.44680655973742 3.66627569741612 3.79660958462013 4.19404379681965 3.85173662121437 3.73515253934124 0.244293018367547 0.238559439907935 0.23593835106308 0.235079317780016 0.237549973665898 0.235079317780016 0.235712727960184 0.238536210744161 0.245750035051259 0.237533509389552 0.235192848384774 0.238354460460337 0.235521451732883 0.23666064434328 0.235079317780016 0.235079317780016 0.240894892030251 0.242652340420276 0.241995048317832 1 1 - 9245275 9246496 9246016.273 9244970 9246590 - gene protein_coding_gene FALSE TRUE AT1G26740.1 structural constituent of ribosome similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69485.1); similar to Os10g0407100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064568.1); similar to Os03g0168900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049095.1); contains InterPro domain Ribosomal L32p protein; (InterPro:IPR002677) -0.234098083431040 -2.60400272268004 0.0247122377161607 1 2.00511509457075 8.94572281480246 -0.234098083431040 0.0642135889822639
AT3G12860_at 1.43609681841971 1.95082847536453 2.63213771647500 2.24149248612246 2.26308451119179 2.29227120867831 2.27744047207487 2.14353508887549 1.88606429184075 2.37914422629888 2.07826398755182 2.51946835607199 2.29105784606788 1.98357506249236 2.27255007136705 2.53026048355959 2.46770676469085 2.40160940164752 2.23917769136533 0.211473298423313 0.217715661786792 0.205835428964151 0.208317052597954 0.205109931076525 0.211632136762626 0.208994504093607 0.215301243490698 0.211229342197267 0.20881451562081 0.207588071725875 0.208891845035054 0.220106044758475 0.206528390679563 0.208842636267140 0.203913901090473 0.215736145375563 0.212662495691996 0.219868152577611 3 3|0 +|/ 4093063 4093590 4093288.6 4091577 4093928 + gene protein_coding_gene FALSE TRUE AT3G12860.1 nucleolar protein Nop56, putative similar to NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) [Arabidopsis thaliana] (TAIR:AT1G56110.1); similar to Os03g0352300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050122.1); similar to Pre-mRNA processing ribonucleoprotein, binding re (GB:ABE82021.1); contains InterPro domain NOSIC; (InterPro:IPR012976); contains InterPro domain NOP5, N-terminal; (InterPro:IPR012974); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region; (InterPro:IPR002687) 0.277602013556358 2.60343640034922 0.0247371015784094 1 2.00423467547842 4.39770596374166 0.277602013556358 0.114312383025846
AT1G73220_at 0.72027715648219 0.446365434693844 1.33413047626152 1.39586370575117 0.496259932661649 0.586398318463841 0.367926520750425 0.320696339730691 0.245872757493512 0.943726994720715 0.401094708326875 0.223503468321126 0.5124121013674 0.370303466908551 0.819958306208124 0.654557457100586 0.801293684991861 0.518676100984737 0.53510858810763 0.208652887837501 0.204926805543948 0.219545324986224 0.216969221199564 0.204926805543948 0.211809745302684 0.207595931894238 0.209981585590019 0.206108305188258 0.212614952423559 0.210336023703744 0.205033372620190 0.216728939140202 0.205371379007428 0.204926805543948 0.208519702937108 0.216649723720830 0.208756410012247 0.208555071563873 1 1 + 27543284 27543689 27543517 27541937 27543896 + gene protein_coding_gene FALSE TRUE AT1G73220.1 sugar transporter family protein similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to putative organic cation transport protein [Phaseolus vulgaris] (GB:AAO83155.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.226084438519565 2.60227637138016 0.0247881086529913 1 2.00243135231685 1.26480358154114 0.226084438519565 0.0516834762095166
AT2G46390_at 9.23964022391118 9.29464535332701 9.49809293446085 9.60231070899746 9.35032793249048 8.99851272627421 8.73811480613365 9.06125140824385 8.52686560648473 8.72046216464223 8.7778834360478 9.07740422178227 8.822230991538 8.8857269699614 8.7304007441235 9.07144984908545 8.74789359657995 8.84274583606713 8.69785609694615 0.140364036665448 0.139664467502858 0.134947326275270 0.138699800378557 0.138639064177342 0.135709996433175 0.134518922102506 0.136369686178757 0.144609654112973 0.137498128632159 0.138920833361534 0.130280707259672 0.130280707259672 0.132405528244802 0.140710512471043 0.130812240359065 0.144268284911279 0.137940841092311 0.139804565262544 2 2|0 -|/ 19049539 19050065 19049923.667 19049374 19050133 - gene protein_coding_gene FALSE TRUE AT2G46390.1 unknown protein 0.249985230304489 2.60187331215747 0.0248058556494852 1 2.00180480410556 17.9817928008994 0.249985230304489 0.0851453763700992
AT2G34450_at 3.83810970669816 4.02736044659803 3.47904187914401 3.49094041749963 3.14898963532964 3.53495935053354 3.46760865370656 4.38973509600869 3.61157601136135 3.54031135695139 3.42264929877738 3.32675887245405 3.28418947053734 3.95611969402202 3.66257148236056 3.49484879450779 3.71084870778318 3.25083121712336 3.92862682831836 0.190757650708380 0.188525669929836 0.190836083489722 0.190433103716713 0.188525669929836 0.195123689587824 0.193095395607803 0.199687571632224 0.190303200933787 0.200213377397148 0.190557262844163 0.196884380224978 0.188525669929836 0.189337472687637 0.195026089841744 0.195015406328209 0.202306657611151 0.198952007138102 0.196838373328877 2 2|0 -|/ 14535003 14536497 14535815 14534815 14536571 - gene protein_coding_gene FALSE TRUE AT2G34450.1|AT2G34450.2 high mobility group (HMG1/2) family protein similar to HMGB3 (HIGH MOBILITY GROUP B 3) [Arabidopsis thaliana] (TAIR:AT1G20696.3); similar to HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis thaliana] (TAIR:AT1G20693.3); similar to Os01g0666200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043799.1); similar to HMG protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73639.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.348561597570405 -2.60068032650210 0.0248584571655638 1 1.99995041316393 7.27564661039282 -0.348561597570405 0.176078100020132
AT1G10300_at 1.20724062592216 1.36330809689294 1.82162974574129 1.57735581580864 1.42249699076733 1.38794913582235 1.54349257034295 1.58791365100030 1.30431449187933 1.57715404956222 1.48050656302471 1.67592626179880 1.50032029228277 1.73331190267453 1.64836873249539 1.28454987029200 1.74142222625975 2.08631066557337 1.07759757100587 0.180522016322973 0.181363752510389 0.177049518029589 0.177049518029589 0.178220817220587 0.178780125163226 0.178828537201871 0.191506080933592 0.184777632607193 0.180608407711846 0.177811975296898 0.182365060925141 0.184882283834088 0.183250135392115 0.185771125581261 0.177049518029589 0.181183757709178 0.187062261437544 0.181321643088571 1 1 + 3379691 3380155 3380006.545 3378144 3380228 + gene protein_coding_gene FALSE TRUE AT1G10300.1 GTP-binding protein-related similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G50920.1); similar to GTP-binding protein CRFG/NOG1 (ODN superfamily) (ISS) [Ostreococcus tauri] (GB:CAL52519.1); similar to putative GTP binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06946.1); similar to putative nucleolar GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35220.1); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Nucleolar GTP-binding 1; (InterPro:IPR010674); contains InterPro domain NOG, C-terminal; (InterPro:IPR012973) 0.225510023073169 2.59946014849183 0.0249123714538585 1 1.99805388363089 2.97068746326190 0.225510023073169 0.0511005530084207
AT3G56730_at 1.80396479760944 1.66906597761036 2.03895771212025 1.76429812514817 1.64009741709984 2.13159145628696 2.24513930364247 2.28818623310225 2.07664812155299 2.52864942308622 1.88351814450264 1.50458845762910 1.82314835306952 1.64408970667121 1.82242900395679 1.73295639351924 2.43028520783452 2.11529795992326 2.26000874967847 0.195996574981563 0.193679379480428 0.197387241711673 0.195275121499373 0.201790115639091 0.201823224068102 0.193128560421912 0.191813405345504 0.196420938995847 0.218954077781412 0.193467846157889 0.200910761837151 0.191813405345504 0.195233938039468 0.19874430936074 0.195345822113992 0.19820148673694 0.194214678893853 0.199880722190928 3 3|0 +|/ 21025348 21025854 21025659.6 21025166 21026057 + gene protein_coding_gene FALSE TRUE AT3G56730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62050.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) -0.263374589189134 -2.59803767882603 0.0249753697080242 1 1.99584309708298 4.02664992024123 -0.263374589189134 0.100469375050153
AT4G29130_at 8.42610520927048 8.53600974964161 8.57123400135515 8.52495096425232 8.13368923644702 7.9450114972431 9.09645661351111 9.11529647489213 7.92036053223791 8.22332142847305 7.83739396980114 8.16868221070135 8.19629771012842 8.23909096204165 7.94845193223544 8.27877728049888 8.12731509481056 7.92520937922526 7.94210055007959 0.149245070630664 0.137435639580236 0.141004795080649 0.151508523432133 0.145996105116903 0.145331403290245 0.142693274905256 0.144267717351918 0.163909169733397 0.139597962353054 0.146238250025388 0.150238777965195 0.140081449959215 0.150752078782691 0.139904189286589 0.137435639580236 0.147484911300619 0.147995390584892 0.141484934134601 4 4|0 -|/ 14352345 14353073 14352666.9 14352043 14355109 - gene protein_coding_gene FALSE TRUE AT4G29130.1 ATHXK1 (GLUCOSE INSENSITIVE 2); ATP binding / hexokinase Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment. Identical to Hexokinase-1 (EC 2.7.1.1) (Protein GLUCOSE INSENSITIVE 2) (HXK1) [Arabidopsis Thaliana] (GB:Q42525;GB:Q42535); similar to ATHXK2 (HEXOKINASE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT2G19860.1); similar to hexokinase [Brassica oleracea] (GB:AAL60583.1); similar to hexokinase [Brassica oleracea] (GB:AAL60584.1); similar to hexokinase [Citrus sinensis] (GB:AAG28503.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) -0.219093719918805 -2.59678648419783 0.0250309123851493 1 1.99389865267571 16.6029674621735 -0.219093719918805 0.0387639963770005
AT3G52690_at 1.97273460548731 1.81234373240134 1.56339168244929 1.82657586788145 1.94583617570912 2.22575132598939 1.67988634115980 2.14268292668986 2.31630069536545 2.41530448548896 1.74985346452587 1.92223525488219 1.86810695785869 1.99142909145383 2.31882809330987 1.41314775889306 2.10180637676459 2.11006152184919 2.65874794781595 0.234466762681029 0.242460750482043 0.245071238329667 0.246444506874623 0.244443774887354 0.232910570547391 0.241751030741818 0.231766378972485 0.247626334820483 0.236322491401398 0.252233798662243 0.240431810261628 0.254439430806443 0.243170697028766 0.24937240997005 0.242972428557140 0.231766378972485 0.239884137357087 0.244769595406593 3 3|0 +|/ 19542031 19542739 19542375.3 19541714 19542789 + gene protein_coding_gene FALSE TRUE AT3G52690.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.270270308187612 -2.59678524165210 0.0250309676043783 1 1.99389672174153 4.09509263613709 -0.270270308187612 0.107729039718677
AT1G04985_at 8.54203172308749 8.38162675017307 8.62750190707017 8.58628252946676 8.93656511139673 8.52603504875554 9.08903932309886 8.92895329769891 8.38579674896906 8.64390705289083 7.77609994635441 7.9086331827959 8.12688621034855 8.13360193077147 7.92845826593319 8.65126583372572 8.5806319187092 7.94405810190525 8.64317253347803 0.140752867039836 0.135711261295256 0.137493747710903 0.135590041265037 0.133471225626214 0.145509228749837 0.134908053043141 0.133406684686922 0.143702227272607 0.13870157926018 0.143566244563195 0.138762155669461 0.136474582499845 0.141514505517179 0.142572714731039 0.139552340036773 0.141959725353187 0.142139453735165 0.138760665550499 1 1|0 -|/ 1416617 1418248 1417379.111 1416342 1418481 - gene protein_coding_gene FALSE TRUE AT1G04985.1 similar to OSJNBa0043A12.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE02812.1); similar to Os04g0669100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054200.1) -0.246368822818483 -2.59614489860091 0.0250594406919799 1 1.99290163761181 17.0466693958087 -0.246368822818483 0.0814628540938331
AT1G63130_at 5.9332252583992 6.55470804298728 6.00533040482352 5.94844055342354 6.7794843750874 5.56885084643011 7.10092843546342 6.6223837203107 5.95805288099176 7.26954312912704 7.01661417148958 6.54390528822299 6.56296026607128 5.83337242882070 6.13225459594982 6.9119450726062 6.21242793908474 5.9476425050021 7.2015324820938 0.404619440914454 0.404619440914454 0.404619440914454 0.404619440914454 0.405581593076576 0.431343318092656 0.419524531004055 0.404619440914454 0.435156431750088 0.404619440914454 0.427712375777045 0.404619440914454 0.421560638005845 0.475171358147006 0.431040583948788 0.404619440914454 0.449181795370734 0.445800016878994 0.404619440914454 1 1 + 23417886 23418211 23417992.25 23416395 23418814 + gene protein_coding_gene FALSE TRUE AT1G63130.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.445927016673637 -2.59583067777293 0.0250734243133561 1 1.99241335623038 12.9165938450207 -0.445927016673637 0.249829800169122
AT1G72610_at 13.3809276622080 13.5424744144167 13.5881539377254 13.5905324597033 13.6359553877409 13.4582359522006 13.3097661891674 13.5286656113386 14.1120968306641 13.8399067793757 14.4871963381008 14.3921685036644 14.3789495496813 14.2588499660667 14.3009424378119 14.1097230004433 13.7478090616252 14.2449836183597 13.7825917187964 0.0644832726009823 0.0610627548796678 0.0676942451257956 0.0643481237898139 0.0620256770623358 0.0678579947839097 0.0630839782583725 0.0647269601785745 0.0660396811450299 0.0621590699016887 0.0613663064370254 0.0610627548796678 0.0612044501686556 0.0631691755554103 0.063386227475641 0.0610627548796678 0.0694308429276149 0.0626916398058158 0.0614733551109009 1 1 - 27343010 27343529 27343229.273 27342776 27343706 - gene protein_coding_gene FALSE TRUE AT1G72610.1 GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;GB:O04751;GB:Q96265); similar to GLP3 (GERMIN-LIKE PROTEIN 3), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G20630.1); similar to oxalic acid oxidase [Brassica napus] (GB:AAX35339.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.228153499125154 2.59521766353873 0.0251007271455004 1 1.99146079221093 27.5801437446866 0.228153499125154 0.0562372184803387
AT1G08210_at 5.13259220882224 5.28267989512757 5.25782905416979 5.13954408034767 6.30445858939729 6.41104916473333 5.26013042175705 4.66802870122650 4.93758920386812 5.28155668550138 5.65146990074492 5.40760706795846 5.35710334191505 4.86201702401128 4.9105085314314 5.18950055579049 4.98926633987929 4.52218190167368 5.56193970789508 0.171628642858029 0.175841732755412 0.185876965641576 0.182805808033598 0.179356967060064 0.178027540891315 0.175115676583559 0.181899171688163 0.173047887743856 0.173451464632192 0.176835861003418 0.173100783002809 0.174045245401313 0.174893337303133 0.173522445880865 0.173971408028867 0.178675839284501 0.175246937764302 0.179663886225058 1 1|0 -|/ 2577137 2578387 2577861.25 2577017 2580666 - gene protein_coding_gene FALSE TRUE AT1G08210.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G22850.1); similar to putative aspartic proteinase nepenthesin II [Oryza sativa (japonica cultivar-group)] (GB:BAD53242.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.271603691299694 2.59520989227902 0.0251010734550702 1 1.99144871665107 10.6178233637879 0.271603691299694 0.109238986124966
AT1G29450_at 5.9099479223895 6.06932612388752 6.21366285913755 6.5331225072864 7.13605969052134 7.10033544494345 6.82741585342315 6.74650598746843 7.34926743706693 6.93828465181043 7.88143067589856 7.61997935590427 7.80126615249284 7.30895912112221 7.68472228079661 7.46010631802224 7.29177378666701 7.09177794928355 7.94007850161437 0.140697926997544 0.138699818901259 0.142625016783943 0.144342697574884 0.132493166310089 0.136002114063769 0.131255072602663 0.133482901401377 0.138994698297513 0.138614618573437 0.135811264753759 0.135356051177592 0.140323811396018 0.137231098743632 0.134905883819963 0.136856925720591 0.142578511719688 0.139434941480440 0.147656741640638 1 1 - 10305985 10306294 10306145.818 10305937 10306485 - gene protein_coding_gene FALSE TRUE AT1G29450.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G29510.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.232893955936434 2.59486553568843 0.0251164237000148 1 1.99091363526386 14.0304031245592 0.232893955936434 0.0636498972948809
AT1G62710_at 4.7092279339252 5.2327108365256 5.59695420514042 5.93918302107741 5.61878798966424 5.14902820071735 6.61445617763491 7.1748965507738 2.85136803176926 4.89691245533322 2.6438178701285 3.31766873449303 4.35155554217944 3.76925792728501 2.48431214175754 3.68361217063232 4.51616234720028 3.28340142531067 3.71516567607104 0.244332037761272 0.237380415391614 0.240836291773270 0.233500928912098 0.233130792712551 0.247494720103508 0.233130792712551 0.239084473202000 0.243700435607542 0.235875519154703 0.248328071111700 0.242537878382684 0.233130792712551 0.238675805121226 0.235026694592011 0.235460599205243 0.236802009474880 0.250683520563020 0.234917921921303 1 1|0 -|/ 23227749 23228488 23228091.5 23227539 23230581 - gene protein_coding_gene FALSE TRUE AT1G62710.1 BETA-VPE (vacuolar processing enzyme beta); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. Identical to Vacuolar-processing enzyme beta-isozyme precursor (EC 3.4.22.-) (Beta- VPE) [Arabidopsis Thaliana] (GB:Q39044;GB:Q93VS7;GB:Q9SI79); similar to GAMMA-VPE (Vacuolar processing enzyme gamma), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT4G32940.1); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49045); similar to Vacuolar-processing enzyme precursor (Pv-VPE) (GB:O24326); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49042); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) -0.335879860874756 -2.59448381543954 0.0251334503052276 1 1.99032050846306 9.41809173489796 -0.335879860874756 0.166521627284008
AT2G38670_at 8.98421440225001 9.08122712880443 9.12934135906447 8.94563107320366 9.46285044427315 8.88010783668355 9.26054898420868 8.88065913715831 7.80742517842559 8.09725135196385 8.2887334817659 8.35763378306772 8.52894262064873 8.40594759253706 8.6366764765072 8.16636943341947 8.49983694383542 8.47192855150848 7.78149732869163 0.150907152886974 0.148804357118585 0.158378037735629 0.145872627812363 0.152606360977257 0.153745660209938 0.151563184946506 0.154154301512877 0.165433859753854 0.154585894746126 0.143247737776467 0.148535157697806 0.146733163981736 0.143136429516541 0.144153486382163 0.148773136302150 0.146436658750223 0.147744778179304 0.151120767150713 2 2|0 +|/ 16176950 16178729 16178053.4 16175915 16178996 + gene protein_coding_gene FALSE TRUE AT2G38670.1 PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1); ethanolamine-phosphate cytidylyltransferase Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis. similar to cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G32260.1); similar to phosphoethanolamine cytidylyltransferase [Hordeum vulgare subsp. vulgare] (GB:AAO43227.1); similar to Os12g0121300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066024.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.288468794625868 2.5938091350591 0.0251635722112724 1 1.98927220461874 17.2355224940916 0.288468794625868 0.125636515637456
AT1G17830_at 1.39189462575978 1.18021698866048 1.55005100829492 1.53899641355621 0.978222458626849 1.10584558688584 1.77312037975564 1.27904334789516 1.78947187606996 2.12824609165271 1.19656449442149 1.68366028065612 0.914178565524885 1.55036040142563 1.4830561699002 1.51970590812091 1.62498942878859 1.86931020795648 1.73476457922924 0.176784954289749 0.183276105670701 0.185676195058789 0.173036295015699 0.175790097472961 0.181102124640412 0.172677642737255 0.172339531461719 0.180102884880702 0.178578116486412 0.181686487914440 0.178539063604481 0.178488104308719 0.173033173301381 0.175011391552734 0.185304748612400 0.180576928910602 0.180077710476709 0.189951044131886 1 1|0 -|/ 6136132 6136923 6136510.4 6135796 6138425 - gene protein_coding_gene FALSE TRUE AT1G17830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73210.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO39871.1); similar to Os10g0494000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064942.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46235.1); contains InterPro domain Protein of unknown function DUF789; (InterPro:IPR008507) -0.258361317780746 -2.59302949056135 0.0251984246905758 1 1.98806086078022 3.03186836672099 -0.258361317780746 0.0956241575058434
AT3G02190_at 7.48440121283577 7.75003077114762 7.8865599332255 8.15371195363292 7.37350616729786 7.01540380760044 6.58151521743349 7.05613782184393 6.25249452831752 6.86495956185129 6.99448422889832 6.82495974125309 6.82743180348792 6.4121984979562 7.09822275294901 6.8432148620118 7.06648089046495 6.22079250423144 6.70270401414296 0.176543032518703 0.176534583157650 0.176391038827946 0.17226619801852 0.174289332336933 0.174985918690139 0.172209360770376 0.172500667057122 0.182802936665448 0.174765717264949 0.175088452852700 0.169646416148086 0.174321679549467 0.176310305618825 0.174800987877391 0.170780183010555 0.182226653802620 0.176701753921211 0.171783966804735 3 3|0 -|/ 406012 406230 406152.4 405823 406408 - gene protein_coding_gene FALSE TRUE AT3G02190.1 60S ribosomal protein L39 (RPL39B) Identical to 60S ribosomal protein L39-2 (RPL39B) [Arabidopsis Thaliana] (GB:Q8L8W6;GB:Q9SRT6); similar to 60S ribosomal protein L39 (RPL39C) [Arabidopsis thaliana] (TAIR:AT4G31985.1); similar to putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD19088.1); similar to Os02g0797200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048394.1); similar to 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD72315.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) 0.284264000838322 2.59276268748278 0.0252103625242616 1 1.98764633793107 14.1090046247574 0.284264000838322 0.121808011293769
AT1G77710_at 10.3801942278041 10.4785375975497 10.7291346480383 10.6837032077326 10.6110345833481 10.5524158414799 10.3231772485671 10.5521985611843 9.9973298165683 10.4453401000974 10.5612284582355 10.3139906820102 10.3635487116603 10.5714692052831 10.2710955191479 10.6183963309972 10.5208435212068 10.2102406673374 10.145501899419 0.0854155035878163 0.085814650530092 0.088134855789952 0.0833284789910512 0.0964416809494383 0.0883823340109452 0.0890268967228094 0.090559470788315 0.101277308508982 0.0873190376338546 0.0847249689727304 0.0847375689077384 0.0922362828546051 0.0874486780715548 0.0856092899674242 0.0836049499690534 0.0905824428030906 0.0903780721760909 0.087898314103864 1 1|0 +|/ 29211646 29212758 29212186.25 29211529 29213039 + gene protein_coding_gene FALSE TRUE AT1G77710.1 Identical to Probable ubiquitin-fold modifier 1 precursor [Arabidopsis Thaliana] (GB:Q9CA23); similar to Os01g0962400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045478.1); similar to Probable ubiquitin-fold modifier 1 precursor (Protein PR46A) (GB:Q94EY2); similar to Probable ubiquitin-fold modifier 1 precursor (Protein PR46A) (GB:Q5PU89); contains InterPro domain Protein of unknown function UPF0185; (InterPro:IPR005375) 0.221669763164990 2.59257422186268 0.0252187985874173 1 1.98735352919170 20.8512539439695 0.221669763164990 0.0450016508878634
AT4G03060_at 8.83537520408992 8.8233642925498 7.85319139964935 7.26806311235395 9.15960823742574 8.53365885787325 9.24007516142466 8.85801121028636 5.6241434212054 9.04375770693447 9.3851060525238 9.02619238979515 8.85623104280598 9.77788090562608 8.17146680367817 8.66041229568239 9.02544496814861 9.22047483666503 8.18850541645878 0.164045553103277 0.163885569143059 0.174353348783119 0.188038056488954 0.159832150936158 0.167832685509957 0.161749088782541 0.164869126765749 0.219701016863859 0.160826843204348 0.162348382489044 0.164102865060792 0.165875235463137 0.166796238012388 0.169459665028678 0.159790464534606 0.172548998791709 0.162990233914712 0.167405954315570 4 4|0 -|/ 1351990 1352900 1352343.8 1351687 1354023 - gene protein_coding_gene FALSE TRUE AT4G03060.1 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors encodes a 2-oxoglutarate-dependent dioxygenase that catalyzes the conversion of methylsulfinylalkyl glucosinolates to alkenyl glucosinolates. involved in glucosinolate biosynthesis and secondary metabolism. similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.2); similar to 2-oxoglutarate-dependent dioxygenase [Brassica oleracea] (GB:AAK95851.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.330511457535326 2.59214869945038 0.0252378559780864 1 1.98669243006015 16.8885201061559 0.330511457535326 0.162367782154295
AT1G11910_at 12.8658328382108 12.9562490937992 13.3089810917524 13.4086361408690 13.0813735457160 13.0694356104556 12.9778415226022 13.1711241860795 12.6625370572889 12.8281580494634 12.8277191401112 12.6763272409314 12.9956917373908 12.8655937402615 12.6812692950916 12.9988939301893 13.1753428275094 12.9629419733423 12.5587296163932 0.055853992869136 0.0556940341604275 0.057288585530252 0.0577878588288848 0.0564424339240292 0.0584738213304356 0.0567461981790693 0.0571981275793858 0.0604391032237231 0.0562820057714253 0.0561663793696969 0.0564091997477913 0.0565425163549531 0.0594034775020008 0.0560640890791432 0.0558366971368444 0.0572663886563946 0.0556940341604275 0.0557273919700404 1 0|1 /|- 4017119 4017817 4017514.889 4016782 4020981 - gene protein_coding_gene FALSE TRUE AT1G11910.1 aspartyl protease family protein similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic proteinase precursor (GB:O04057); similar to aspartic proteinase [Theobroma cacao] (GB:CAC86004.1); contains InterPro domain Saposin-like; (InterPro:IPR011001); contains InterPro domain Saposin B subdomain; (InterPro:IPR008140); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Saposin B; (InterPro:IPR008139); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Saposin-like type B, 2; (InterPro:IPR008138); contains InterPro domain Peptidase aspartic, active site; (InterPro:IPR001969); contains InterPro domain Saposin; (InterPro:IPR008373); contains InterPro domain Saposin-like type B, 1; (InterPro:IPR007856) 0.219587799123483 2.59177950673007 0.0252544020951744 1 1.98611885899443 25.8954912836782 0.219587799123483 0.0408082310000685
AT4G12380_at 0.661715350944424 0.612077893187996 0.841400435460875 0.698039660697566 0.858134061482426 0.808697290950217 1.34099977775235 1.21176685870977 1.69430713210755 1.27853067841823 0.670422184181884 1.05501962632457 1.39725857556750 1.40448698822623 1.10428183874178 1.29792202402749 0.895221377846157 1.52277190171403 1.37074754917475 0.196840696383514 0.192563424844502 0.186806433235199 0.189622286275390 0.185524525851655 0.194037871359638 0.183756557694857 0.188820227945244 0.184086293739915 0.197100412526742 0.187359738986926 0.183756557694857 0.186886138736725 0.201011396840436 0.19202218683056 0.195799326440741 0.185947495212687 0.189446676077798 0.184102109312813 4 0|4 /|- 7333512 7334055 7333686 7333508 7334466 - gene protein_coding_gene FALSE TRUE AT4G12380.1 unknown protein -0.217255414994502 -2.59110547490774 0.0252846377765847 1 1.98507172730132 2.18724634172098 -0.217255414994502 0.0355337025274605
AT2G07280_at 0.50389249707081 0.494778899506799 -0.0678281263388942 0.507703574965728 0.211304491947670 0.644869846558565 0.362274557712423 0.383717634174346 1.09236263704981 0.876040891602427 0.430032124830564 0.226006906187012 -0.0780159774086277 0.47732991430112 0.742035688911015 0.822989512944846 1.08588713044721 0.608409968082159 1.03549501184473 0.191898318756887 0.187517634241809 0.196421067647772 0.196686119541654 0.192134132647541 0.19692990286857 0.189839978810986 0.192101715164850 0.194164466804636 0.187739938527489 0.190317024261427 0.198886954310078 0.191742081671121 0.192076844558580 0.200221699733456 0.195384332706060 0.20437929242897 0.208616317091001 0.196558831532328 2 2|0 +|/ 3027455 3029040 3028255.2 3026395 3029071 + gene protein_coding_gene FALSE TRUE AT2G07280.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G03970.1) -0.287059277647452 -2.58957084392425 0.0253536113223518 1 1.98268777897659 1.15040613296763 -0.287059277647452 0.124762513669857
AT2G04420_at 1.66648574700218 1.67484899943479 1.64502476464316 1.52753065951927 1.23352899881304 1.57589630184289 1.53200151779164 1.72640626322279 1.99109202273039 1.85724426879296 1.45257944410695 1.04380346888836 1.73213332697154 2.04699088193656 1.86560879423286 1.47214173316343 1.54400020383135 1.64212663794030 1.91420304431404 0.185446624383169 0.190396546088232 0.180237302832422 0.192127134084304 0.18693103720919 0.190625579286014 0.185616080633921 0.180093786649796 0.193411170761743 0.187610665560755 0.190752371671455 0.187863740613246 0.191126909545626 0.188617238199271 0.195315257785025 0.180565342563038 0.185929133586145 0.201599803139621 0.192194919047590 2 2 + 1535709 1536191 1535989.455 1535486 1536247 + gene protein_coding_gene FALSE TRUE AT2G04420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25270.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.237681917276737 -2.58941756448315 0.0253605105996736 1 1.98244968121695 3.33310015986524 -0.237681917276737 0.071117547126042
AT1G53310_at 10.3322159317741 10.3811781533582 10.2316563514169 10.3940499625171 9.69741774371236 9.68418667433055 9.8017904438428 9.61787498942997 8.81887963220862 9.04658395185369 9.37588025330831 9.56983642527997 9.13606753699847 9.45579969799338 9.38570094397205 9.21738105893933 9.34634736866654 9.28423508213329 8.7559225185113 0.107182144793964 0.106892247211270 0.109740409305043 0.107701937197723 0.108027995887607 0.107787857100990 0.107525597498811 0.108192348571537 0.115291105439541 0.115881603014088 0.105511524357465 0.105511524357465 0.113491154859793 0.105511524357465 0.115832103689553 0.106757177022621 0.105785439860714 0.109965582648879 0.117376027572304 1 1 - 19887993 19888571 19888256.818 19887695 19892037 - gene protein_coding_gene FALSE TRUE AT1G53310.1|AT1G53310.2|AT1G53310.3 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (PEPC 1) (AtPPC1) (PPC1) [Arabidopsis Thaliana] (GB:Q9MAH0;GB:Q546E4); similar to ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT2G42600.1); similar to ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT3G14940.1); similar to phosphoenolpyruvate carboxylase [Brassica juncea] (GB:CAA11415.1); similar to phosphoenolpyrovate carboxylase [Brassica juncea] (GB:CAA11414.1); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AAB80714.1); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) 0.220586740889915 2.58938764713776 0.0253618574283052 1 1.98240320913589 19.1276469880157 0.220586740889915 0.0433566485503495
AT3G27500_at 1.13199858884208 0.703678469315864 1.51444013523796 1.20692482351207 1.0358543808343 1.35799874897912 1.03208596744720 1.05000271721574 1.7003439928458 1.37402428564061 1.70284239141989 1.76367413257098 1.67196627249858 1.79665512315022 1.84427450172788 1.80858715954554 1.40699588050383 2.04485407493453 1.47621465879068 0.271387914782005 0.254082518387030 0.257508820934867 0.254082518387030 0.261680192633233 0.259972685943453 0.256858686074005 0.254082518387030 0.262446132356663 0.273309321103400 0.263951928730834 0.262198467088083 0.254082518387030 0.26169623635224 0.259425467160174 0.261417205462297 0.255727751512691 0.254082518387030 0.254956855478604 3 3 - 10184788 10184992 10184910.429 10184070 10186318 - gene protein_coding_gene FALSE TRUE AT3G27500.1 similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42840.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G27473.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28650.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) 0.268741649693606 2.58921577075016 0.0253695963804295 1 1.98213622668829 2.76504406449119 0.268741649693606 0.106975472379149
AT4G32890_at 2.4868956356945 2.99469236361882 2.28609408373318 1.92295863838432 2.45585309801932 2.71670058565918 2.23990931742338 2.51349410316622 3.25281654590794 2.82229462379233 3.79671021017536 4.00965584374629 4.26647825732296 4.47046828084657 3.88701377228917 3.6750921380129 2.99097010209716 3.15475210765973 2.89717980795296 0.22538308315925 0.221442832643068 0.228594478607772 0.226866753352365 0.226328367349947 0.222039919718666 0.232367423762615 0.222761050445393 0.225385092761220 0.237069393709321 0.221442832643068 0.22442531122966 0.228333749241126 0.226005778593291 0.222789681363938 0.225964391902541 0.228599698315090 0.222793606984606 0.224584190053863 4 4 + 15876083 15876584 15876283.182 15875474 15876766 + gene protein_coding_gene FALSE TRUE AT4G32890.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 11 (AtGATA-11) (GATA11) [Arabidopsis Thaliana] (GB:O82632); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G25830.1); similar to Zinc finger, GATA-type [Medicago truncatula] (GB:ABE78372.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.288641338137147 2.58897519148795 0.0253804326752338 1 1.98176252985296 5.83815285233062 0.288641338137147 0.126296108809992
AT1G02305_at 10.6099763505731 10.9651585353874 11.1970799182740 11.3121284029915 11.3851694616360 11.0879373207208 10.5673609454836 10.6689186289690 10.1072846166419 10.4957793441587 10.1721717715798 10.0914097881305 10.3582000487449 10.2240344446921 10.1948767054303 10.4370295697913 10.1974123544195 10.3066288370647 10.2794473270147 0.092934768785665 0.0852808087758456 0.0892275819308051 0.0883191977861067 0.0852808087758456 0.0936040464509776 0.085596568612875 0.0880098863274535 0.103236251703040 0.087470201012409 0.0877355901319009 0.0865912969863841 0.0873141911075897 0.092828008370488 0.0917510557939101 0.0852808087758456 0.098905585990588 0.0877424944403432 0.0866116693314469 1 1|0 +|/ 457043 457902 457288 455688 458124 + gene protein_coding_gene FALSE TRUE AT1G02305.1 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02300.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32840.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1, propeptide; (InterPro:IPR012599); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.248137585756077 2.58886645815840 0.0253853317943380 1 1.98159363381581 21.2451616301311 0.248137585756077 0.0844342637472355
AT3G24130_at 1.10204998624583 0.933183929825157 1.42319795405669 1.36013387449526 1.09451731003734 1.34047570195538 1.01908951347088 1.19956648681809 1.11816311808901 0.694603792311987 1.08202748450497 0.708888498192996 0.98409167588468 1.65031359804934 0.945465443166615 1.23656582906305 1.41313660301446 1.36794422390073 1.04663146752249 0.192528141313670 0.192202847323244 0.188262780875230 0.190046184110645 0.189097206116883 0.197386983591839 0.188262780875230 0.193254457408515 0.212583858115424 0.207187883338722 0.189884691241987 0.191573000603128 0.199151845991693 0.199164675513228 0.188262780875230 0.190833135744907 0.191022328437705 0.190722698475609 0.192610456040496 3 3 - 8711820 8712706 8712223.545 8711670 8713431 - gene protein_coding_gene FALSE TRUE AT3G24130.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G18990.1); similar to pectin methylesterase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20793.1); similar to Os07g0655600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060498.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.23076505393856 2.58839219990342 0.0254067110052907 1 1.98085697867454 2.24737032566971 0.23076505393856 0.0613210335011003
AT1G67890_at 7.45178331969614 7.09569714165606 7.18803807868997 6.81738238070656 7.3890104050715 7.18624973258354 7.83754305207919 7.29937752494636 7.314634532113 7.40614168703433 7.14601983313428 7.0167752790645 6.84023690290879 7.52704998734338 6.94477176572385 7.42229779852065 7.05864700264533 6.67489410805409 7.46635992744224 0.193190277481873 0.196090806095762 0.200292294608482 0.194955392545898 0.200961179037716 0.201626089441046 0.195400046907083 0.205556310074135 0.219066630022869 0.195236721456895 0.193380020967845 0.196731413446749 0.201842192173693 0.198977085218762 0.203631616587406 0.190914946211234 0.217103006933557 0.195635842415601 0.190914946211234 1 1|0 +|/ 25463637 25466059 25464917.111 25460842 25466455 + gene protein_coding_gene FALSE TRUE AT1G67890.1|AT1G67890.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06640.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49470.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06620.1); similar to Os11g0678000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068453.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22048.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98953.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06630.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49470.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06620.1); similar to Os11g0678000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068453.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22048.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98953.2); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767) -0.296402787260187 -2.5881416296032 0.0254180136917119 1 1.98046778152507 14.5204095211974 -0.296402787260187 0.133478559566128
AT3G09690_at 4.99566744836086 5.15850620064813 4.8075911168154 4.28499544054023 4.97645030506286 4.65938259065448 4.92295321481932 5.0667792829582 5.49000793499294 5.19722210294391 5.34230997885089 5.24943290931168 4.83969023387616 5.07015645119973 4.64410217464864 4.82255276451488 4.93803401431356 5.21071610503381 4.93827602092408 0.195630478220631 0.191038525249708 0.199118487520024 0.195631123464241 0.189324682632945 0.198753919172558 0.191278164885867 0.196926172621522 0.202300747455386 0.189324682632945 0.199119476916474 0.193774847023593 0.190337025042021 0.192102617459033 0.189324682632945 0.189324682632945 0.192582156667474 0.190707184229455 0.196264896562289 3 3|0 +|/ 2973835 2974528 2974213.9 2971878 2974848 + gene protein_coding_gene FALSE TRUE AT3G09690.1|AT3G09690.2 hydrolase, alpha/beta fold family protein|hydrolase similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G02970.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE78305.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.273874682040013 -2.58796715910237 0.0254258866062238 1 1.98019678942824 9.97060387427692 -0.273874682040013 0.112264412995671
AT1G04410_at 12.7111878197042 12.8106482703079 12.9270299893594 12.9667586153721 12.6771317426672 12.7714670931729 12.7438001344284 12.8888589436059 12.2972116734192 12.4691288691163 12.7000628581784 12.8156321388824 12.7579274534548 12.6061738896412 12.7703669210531 12.5631032278986 12.7490925901894 12.8272279194255 12.2445398751298 0.0653577827213278 0.0643391022778942 0.0654988051049396 0.0660697537790437 0.0643775163625469 0.0643391022778942 0.0643391022778942 0.0669494856057481 0.069796020055039 0.0652239944452762 0.0670394790381969 0.0654055801965649 0.0655419813669323 0.0645121454577468 0.0678663104414873 0.0650038903324271 0.0665792309007035 0.0656557372120254 0.0659145996106717 1 1|0 -|/ 1189423 1190260 1189948 1189077 1191411 - gene protein_coding_gene FALSE TRUE AT1G04410.1 malate dehydrogenase, cytosolic, putative Identical to Malate dehydrogenase, cytoplasmic 1 (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:P93819); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT5G43330.1); similar to malate dehydrogenase-like protein [Solanum tuberosum] (GB:ABC01890.1); contains InterPro domain Malate dehydrogenase; (InterPro:IPR008267); contains InterPro domain Malate dehydrogenase, NAD or NADP; (InterPro:IPR010945); contains InterPro domain Malate dehydrogenase, NAD-dependent, cytosolic; (InterPro:IPR011274); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557) 0.216855651874960 2.58785653492947 0.0254308797244574 1 1.98002496654457 25.3424395831083 0.216855651874960 0.0352165013883272
AT2G30840_at 2.43811841692681 2.61960111129522 2.52808045883448 2.40763836138979 2.99526432272691 2.35264100529307 1.15596050800299 1.3159931844598 1.05490288752509 1.45160673344428 0.95268531554277 0.869953489308133 1.05552771549493 1.22453533814098 1.30438792733626 0.705998515167555 1.41060017227537 0.860574555034831 1.00832075317918 0.237460946177929 0.234228497162249 0.235812881877448 0.241102647952314 0.229437376712169 0.238985518752195 0.227082541921201 0.233567319726044 0.241342043320259 0.229723592426246 0.226751043012832 0.231051935031879 0.231938053006942 0.232793016518242 0.235206268390338 0.232012689376858 0.229332762200413 0.231580252446720 0.228767898501473 2 2 - 13142717 13143207 13142969.182 13142507 13143926 - gene protein_coding_gene FALSE TRUE AT2G30840.1 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT2G30830.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.282455242855639 2.58744576591242 0.0254494285977797 1 1.97938696465669 3.33648367274303 0.282455242855639 0.120644975759744
AT4G19860_at 10.70032718387 10.7071879059542 11.0600559190942 11.0715740546505 11.1600031022854 11.1409163667825 10.4408037134274 10.3337660629338 10.7942993120746 10.7942975599333 10.6736742309841 10.3075617987541 10.7444429390495 10.6255129490622 10.3449772496449 10.8083995965720 10.8780914447064 10.8271441072077 10.7826182723130 0.0625230016325828 0.0627136109230133 0.06401227103248 0.06378998486317 0.0633181782790848 0.0672892867398564 0.0624271569704109 0.0649859492982688 0.0653772772636359 0.0643359253452217 0.0653083794408658 0.0637002068006772 0.0649177925109242 0.065477112565806 0.0633974730904353 0.0623267797647195 0.0673405001156354 0.062839304712578 0.064144140616553 4 4|0 -|/ 10777675 10778807 10778016.556 10777522 10780471 - gene protein_coding_gene FALSE TRUE AT4G19860.1 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to lecithin:cholesterol acyltransferase family protein / LACT family protein [Arabidopsis thaliana] (TAIR:AT3G03310.1); similar to lecithine cholesterol acyltransferase-like protein [Lycopersicon esculentum] (GB:AAQ04833.1); similar to Os04g0615100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053867.1); contains InterPro domain Lecithin:cholesterol acyltransferase; (InterPro:IPR003386) 0.211718317773706 2.58689523217442 0.0254743096596229 1 1.97853190603482 21.5476445824270 0.211718317773706 0.0189580567106571
AT2G15290_at 8.99127149924749 8.91726615102607 8.44152356891027 8.36425538152305 8.92293388223456 8.34193877186766 9.5548174665259 9.42620351647797 9.70591374497495 9.40013176509774 9.44536464466628 9.75799323253533 9.33468377896477 9.78084147401758 9.78908714379712 9.51260217478113 9.0923830276852 9.70394455665559 9.03331255834326 0.121774859121498 0.114336251065188 0.129174743353651 0.122164302902724 0.110390826508329 0.132886531410109 0.116019856768717 0.114378010307569 0.115943229598442 0.112691865981517 0.114806265377883 0.110404167059232 0.110351504742711 0.110351504742711 0.113736450798965 0.110496376815640 0.124184050849912 0.111236925538838 0.124813731477784 2 2 - 6649621 6650446 6650096.182 6649382 6651119 - gene protein_coding_gene FALSE TRUE AT2G15290.1 ATTIC21/CIA5/TIC21 (CHLOROPLAST IMPORT APPARATUS 5); protein homodimerization Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma. similar to Tic21 [Pisum sativum] (GB:ABG00264.1) -0.266200137926453 -2.58673418472827 0.0254815926385283 1 1.97828178129277 18.3359755431982 -0.266200137926453 0.104629260588697
AT1G70730_at 10.0879685649073 9.95547077987866 10.0211079917486 9.95746157485692 10.0433033649865 9.87926105420234 10.8334014113313 10.7354306949352 10.0452774778318 10.2690214636949 10.1007007660437 10.0325302324505 9.8946575151555 10.1212599310013 10.2084035986759 10.2066178192817 10.2256093851912 10.0675975173956 10.0407272024013 0.072119856086505 0.0731378071596032 0.0736877596847995 0.0760050704251703 0.0731417984344533 0.0744346039123692 0.072119856086505 0.0746733515343107 0.0779470569499164 0.0744081449322756 0.0739003721107538 0.0727870159376406 0.0795386620783944 0.0747958476990965 0.0756204037711793 0.072119856086505 0.0786533827799469 0.0757500720711768 0.0749825392087492 1 1|0 -|/ 26672705 26673565 26673161.889 26672527 26676441 - gene protein_coding_gene FALSE TRUE AT1G70730.1 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative Identical to Probable phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2) [Arabidopsis Thaliana] (GB:Q9SGC1); similar to phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative [Arabidopsis thaliana] (TAIR:AT1G23190.1); similar to PGM (PHOSPHOGLUCOMUTASE) [Arabidopsis thaliana] (TAIR:AT5G51820.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9ZSQ4); similar to cytosolic phosphoglucomutase [Populus tomentosa] (GB:AAR83345.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9SM60); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; (InterPro:IPR005845); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; (InterPro:IPR005844); contains InterPro domain Phosphoglucomutase/phosphomannomutase C terminal; (InterPro:IPR005843); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; (InterPro:IPR005846); contains InterPro domain Phosphoglucomutase/phosphomannomutase; (InterPro:IPR005841) -0.219477159320549 -2.58550641082439 0.0255371832079287 1 1.9763749892377 20.3019327514185 -0.219477159320549 0.0417182610714431
AT1G55500_at 4.93516480190428 4.87882210614483 4.83299829988449 4.92645642486353 5.11485410294982 4.60156895212357 5.81615863161968 5.05075413208798 3.94060079032757 4.07435186099958 4.31568868679449 4.57396977791557 5.04967883900156 4.66796077218126 4.7212253533565 5.16810653037411 5.39842484598122 4.52801137891814 3.52485665660007 0.213647936873395 0.210819085294388 0.215064634595382 0.209916050558799 0.213357916076243 0.223285883933817 0.217001052135845 0.22412520452399 0.223483141027191 0.220160987107873 0.215919555757477 0.209916050558799 0.214240115873046 0.210671717535105 0.224169891538972 0.209916050558799 0.224501689311171 0.211923709270133 0.214514779649744 1 1|0 +|/ 20725353 20726089 20725651.556 20723241 20726399 + gene protein_coding_gene FALSE TRUE AT1G55500.1 similar to ECT2 [Arabidopsis thaliana] (TAIR:AT3G13460.4); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE87461.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.327512348719554 2.58539272620343 0.0255423366070776 1 1.97619843857201 9.34434036930115 0.327512348719554 0.160597582502752
AT1G23120_at 2.93978169287035 3.09323959674446 3.23265766621908 3.67298469106857 2.87380804483797 3.86798583592685 2.90296475876505 2.87115186376774 2.33092309656876 2.61702653905946 2.49945222857556 2.43547148274898 2.58936470768351 2.54179040321488 2.71378777366276 2.60159767706554 3.46869204903654 2.68299336762515 2.3216373120779 0.235889601386123 0.230597512554023 0.234039628474525 0.234498321053544 0.241507275041330 0.247149545259071 0.240448740689799 0.232759853713552 0.237773689966916 0.23397294371868 0.228275321179336 0.233334231554884 0.241209617176938 0.232981171993832 0.23455873585733 0.230000957457948 0.230836281689909 0.235096557690324 0.232565566743017 1 1|0 +|/ 8198780 8199311 8199037.6 8198709 8199546 + gene protein_coding_gene FALSE TRUE AT1G23120.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT1G70870.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85634.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.364261321721231 2.58527830435796 0.025547524459716 1 1.97602074421179 5.7392414489935 0.364261321721231 0.190111300412171
AT1G65620_at 3.64856161117892 2.98690904548350 2.53496513597108 2.94721645250590 2.32322412584167 2.81788742369024 3.0929771901557 2.95544392945417 2.70975832246234 3.48932283222773 2.69576852004798 2.98896387365694 2.87370161442312 2.72401106829242 3.14271010073707 3.36688038605456 3.43301960961789 2.8928286104881 3.27130758972972 0.181684447094628 0.189142471510467 0.180993726233544 0.188836807437798 0.183914394378742 0.182681144213673 0.182758818472566 0.187850440228462 0.180248177102081 0.186188829255625 0.183732885763600 0.179147924478482 0.179147924478482 0.180586780967084 0.181471766193856 0.182568584784848 0.187809481522492 0.184263962305998 0.190102831708960 1 1 + 24403951 24404375 24404186.182 24401806 24404632 + gene protein_coding_gene FALSE TRUE AT1G65620.1|AT1G65620.2|AT1G65620.3 AS2 (ASYMMETRIC LEAVES 2) required for formation of a symmetric flat leaf lamina, encodes a member of a family of proteins characterized by cysteine repeats and a leucine zipper; involved in KNOX gene regulation. Acts together with ASL1 in proximal-distal symmetry determination. Identical to LOB domain-containing protein 6 (Protein ASYMMETRIC LEAVES2) (LBD6) [Arabidopsis Thaliana] (GB:O04479); similar to ASL1 (LATERAL ORGAN BOUNDARIES domain gene 36) [Arabidopsis thaliana] (TAIR:AT5G66870.1); similar to ASYMMETRIC LEAVES2 [Zea mays] (GB:AAY24684.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.328605217395508 -2.58505478864596 0.0255576615909206 1 1.97567363320296 5.99916397481249 -0.328605217395508 0.161539130963893
AT1G09760_at 6.66177163831797 6.7037260340526 6.16724961433176 6.18685043425309 6.84462922079254 6.67719096513694 6.64209991729619 6.44605298047583 4.75158488981602 4.91127142390415 5.3955304595796 5.7398157667709 5.17702399816424 5.02896530058081 5.61683930904276 5.48417826796093 5.79038661233388 5.5532969697352 4.99678059281753 0.233946018173966 0.231560852134313 0.238790311462944 0.235845244960122 0.237066448587474 0.244724270869674 0.236587216125627 0.239539570533277 0.243688747890063 0.234587317444191 0.231560852134313 0.232746863261723 0.241021670273762 0.236711806148323 0.23645784453533 0.233411357531931 0.245437330517602 0.232449771355539 0.233848305118096 1 1|0 -|/ 3159602 3160951 3160188.375 3159127 3161694 - gene protein_coding_gene FALSE TRUE AT1G09760.1 U2A' (U2 small nuclear ribonucleoprotein A); protein binding Identical to U2 small nuclear ribonucleoprotein A' (U2 snRNP-A') [Arabidopsis Thaliana] (GB:P43333;GB:O04497); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G50690.1); similar to unknown [Solanum tuberosum] (GB:ABA81870.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, C-terminal associated; (InterPro:IPR003603); contains InterPro domain Leucine-rich repeat, SDS22; (InterPro:IPR007092) 0.221138183050706 2.58442739347161 0.0255861370877405 1 1.97469933814119 11.7210964610989 0.221138183050706 0.045330523573557
AT3G23330_at 2.00172622191656 2.19658802971639 1.76880492008028 1.5955381551042 2.06934885676041 1.71326992185492 2.06576719902245 1.92227120180206 1.65300338261652 1.93945288700850 1.67060187995047 1.50395257534006 1.57718122416654 1.28542234551052 1.60565512871044 1.31887935464509 1.97189740257751 1.45364912490683 1.73914878241906 0.199782519913171 0.201555089594231 0.196298552249567 0.196381728979193 0.189873046383868 0.187624576946897 0.196342024179106 0.189519218418186 0.189401100889848 0.190911755830909 0.187624576946897 0.190053412390131 0.201507161871706 0.190249256031893 0.193403610512756 0.18837133796215 0.198945270071473 0.203773844820660 0.187624576946897 3 3 + 8348758 8349317 8349097.273 8347207 8349354 + gene protein_coding_gene FALSE TRUE AT3G23330.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G12770.1); similar to selenium-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC07088.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.244322252101588 -2.58441608853305 0.0255866504699803 1 1.97468178280030 3.57946759502747 -0.244322252101588 0.08031224478703
AT3G56830_at 4.54088898661109 4.11271622650412 3.87340258979324 3.83387461777435 4.40640511887911 4.59462273204202 4.39204702503989 4.54702332017054 4.21925377794601 4.25570444754997 3.93292729383943 3.98989385090907 4.13012661289868 4.13961496362831 4.2261412584524 3.99213936111201 3.65483331659018 4.20349562180329 4.45422084758078 0.194789196256499 0.192061160668581 0.192594184304037 0.191910680449948 0.188904340798606 0.194382803498205 0.190551008550222 0.192728227893035 0.207363204333617 0.189877702367044 0.190715041593073 0.195345059391667 0.193413906054524 0.193829337007969 0.193283779610470 0.189299254067666 0.190739914104324 0.188449280255578 0.196911986234075 3 3 - 21053865 21054794 21054095.818 21053409 21055297 - gene protein_coding_gene FALSE TRUE AT3G56830.1|AT3G56830.2|AT3G56830.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65420.1); similar to Protein of unknown function DUF565 [Medicago truncatula] (GB:ABE93092.1); similar to Os03g0852600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051925.1); contains InterPro domain Protein of unknown function DUF565; (InterPro:IPR007572) -0.248586223873655 -2.58383289501929 0.0256131483461229 1 1.97377616272449 8.4593090234 -0.248586223873655 0.0855418664676462
AT1G67100_at 2.0687029364675 1.91734343812584 2.30586126641594 2.50420693579281 1.73173134430892 1.71594057324481 2.1373990520192 2.19136317761531 2.7214215418554 2.41408815132869 2.15745976516116 1.90074651254973 1.9947200514561 1.9535176452709 2.46125493898 1.87845673047883 2.02638369510336 2.61450655802209 2.51508675662071 0.22304752335262 0.219326693982958 0.215856952807766 0.217413167955277 0.222408561545544 0.224092787550403 0.221542836535385 0.224546056694391 0.222527605106123 0.215856952807766 0.234038715887807 0.227622600767811 0.216637245372843 0.234504768007624 0.228780743836928 0.22468741166031 0.231189165966285 0.238701851929884 0.219119292318290 1 1 + 25057595 25058258 25058006.091 25057401 25058510 + gene protein_coding_gene FALSE TRUE AT1G67100.1 LOB domain protein 40 / lateral organ boundaries domain protein 40 (LBD40) Identical to LOB domain-containing protein 40 (LBD40) [Arabidopsis Thaliana] (GB:Q9ZW96;GB:Q53XE6); similar to LOB domain protein 41 / lateral organ boundaries domain protein 41 (LBD41) [Arabidopsis thaliana] (TAIR:AT3G02550.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96961.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.220542600295086 -2.58369461059041 0.0256194353767797 1 1.97356143047220 4.40835836736347 -0.220542600295086 0.0442601225007165
AT1G60995_at 4.0303381715366 4.26084755246671 3.88038133653225 3.98077388610668 4.79029319553448 4.29108375190917 4.34727338874823 3.86590611102859 4.07498850871095 3.55561398700293 4.27661017517068 4.39940262067261 4.45557425908043 4.48485786835982 4.31260737277991 4.46056026542634 4.04983751964674 4.06469962200563 3.89999467932218 0.249928657666888 0.244688934339119 0.253000977849186 0.255638798720876 0.247326199751404 0.276663151304455 0.243121887781414 0.249330049713567 0.250269887646892 0.243121887781414 0.245933290417665 0.252438175838997 0.243121887781414 0.252188714561994 0.248188773673635 0.247628146036249 0.262335913577782 0.244067319120625 0.243121887781414 1 1 - 22469467 22470175 22469764.182 22469305 22474381 - gene protein_coding_gene FALSE TRUE AT1G60995.1 similar to S3 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09996.1); similar to S1 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09997.1); similar to S2 self-incompatibility locus-linked pollen 3.15 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09998.1); contains domain gb def: Hypothetical protein At1g61000/T7P1_14 (PTHR21650:SF4); contains domain MEMBRALIN/KINETOCHORE PROTEIN NUF2 (PTHR21650) 0.289514028894851 2.58365203407648 0.0256213714022422 1 1.97349531672835 8.25913772651857 0.289514028894851 0.127654974022220
AT3G11110_at 4.77233688181042 4.97620680422664 5.16604589051445 5.18822553663978 5.26255610548152 5.20186192590314 6.42149623782267 6.7562485964429 6.5268977960137 6.433755082935 6.68909071001122 6.34469853074773 6.88359846746359 7.08654739137727 6.01715187535551 6.28455766782723 6.4730715552876 6.22813198903283 6.37332414663727 0.235251283496156 0.220919123832654 0.224050246025608 0.226421032591426 0.214574949780941 0.216224443102442 0.218927783553481 0.220759914267267 0.223885454540642 0.218260157034321 0.219891675799921 0.232513283293322 0.21492577250469 0.219511906687938 0.230621718260206 0.215312309684100 0.214574949780941 0.220133721820644 0.219143054027915 3 3 + 3480012 3480401 3480226.909 3479985 3480461 + gene protein_coding_gene FALSE TRUE AT3G11110.1 zinc finger (C3HC4-type RING finger) family protein Identical to Probable RING-H2 finger protein ATL3D (ATL3D) [Arabidopsis Thaliana] (GB:Q9SRM0); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G43420.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE91399.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.235351375290858 -2.58280192273584 0.0256600575723357 1 1.97217528046671 11.9408797633135 -0.235351375290858 0.0687438402648616
AT3G06250_at 3.62922182544342 3.85174860883482 3.86733040139042 3.61745928537597 4.31396719838224 4.21180003934637 4.15563926607905 3.6314726917741 3.00715855241905 3.17451080779528 3.31306425860729 3.90345932298315 3.98967631578662 3.76508968046872 3.35466222490189 3.66833573854295 3.84413903392797 3.39175404343826 3.71617077622419 0.223686378485071 0.218174293869013 0.230810035130705 0.220866004877148 0.223850554753919 0.223976002791314 0.218174293869013 0.219609447059443 0.236679900132057 0.221990081177361 0.223137572659153 0.218174293869013 0.224988060435919 0.218681787998418 0.225054807616264 0.218174293869013 0.233487304994426 0.222928348204282 0.219249312002411 3 3 - 1889911 1890243 1890094.273 1888842 1892781 - gene protein_coding_gene FALSE TRUE AT3G06250.1 FRS7 (FAR1-RELATED SEQUENCE 7); zinc ion binding similar to FRS12 (FAR1-RELATED SEQUENCE 12), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G18960.1); similar to FAR1; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE87107.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.270055582471752 2.58213256684627 0.0256905585570745 1 1.97113596506265 7.3863562259841 0.270055582471752 0.109057735144385
AT3G52040_at 5.43414395791387 5.62223403987952 5.48439463264424 5.71426885349908 5.1984982462097 4.62173691075808 5.29405052485178 5.86054024654646 4.8069814712504 4.9194751180621 4.71556211814083 4.90832823343555 4.59995416375229 4.43326967531367 5.08842863686862 4.32909537583238 4.43872674674951 4.0869417456241 4.98505602801509 0.207584093899838 0.210694299284296 0.208974713187562 0.212895174777029 0.215396605992594 0.216527802654411 0.206053282246248 0.204025400468265 0.207306504410497 0.211656421575018 0.204222081052525 0.201597463504244 0.210895587533183 0.204790040370213 0.207312792318953 0.202486876768532 0.212709104534238 0.203543009620468 0.20510903350827 3 3|0 -|/ 19315349 19315745 19315502.333 19315148 19315839 - gene protein_coding_gene FALSE TRUE AT3G52040.1 similar to unknown [Hyacinthus orientalis] (GB:AAS20983.1) -0.313408366832354 -2.58209678995506 0.0256921898315303 1 1.97108041511132 10.1431713645747 -0.313408366832354 0.149046616124883
AT1G61990_at 4.59527108634345 4.90823107783203 4.58238611440013 4.41501911154142 5.0603474913551 4.63851496682952 5.47822576882915 5.41235910012591 4.03977105826651 4.43156195414481 3.765504045299 4.03472178423954 4.08691850956991 4.14506385442794 4.10889565458726 4.33878919554677 4.50610011914783 4.64435313999209 4.4126657008415 0.242296099028231 0.239035901780421 0.241997969934935 0.239984480508857 0.239638712142906 0.247205842422526 0.236220023585918 0.242662796266616 0.241510128984507 0.244075850019508 0.238153107047345 0.235658823877483 0.235658823877483 0.235872736313775 0.245931016316743 0.240518673071391 0.253258184038224 0.235785316167691 0.247192204644326 1 1 + 22915789 22916252 22916095.3 22914870 22916600 + gene protein_coding_gene FALSE TRUE AT1G61990.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT1G61960.1); similar to Os05g0403400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055498.1); similar to mitochondrial transcription termination factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38194.1); similar to Os07g0423000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059486.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.257663893575370 -2.58187103963260 0.0257024854418749 1 1.97072990056245 9.1355241024582 -0.257663893575370 0.0960783482533788
AT1G06800_at 2.38310418226543 2.41821549424783 2.50809856301045 2.79542367006022 2.51846805741321 2.78933737460110 2.79385210102822 2.51537750038283 2.47963271676751 2.3299161913518 2.22691973235719 2.76137684616991 3.1742059214426 2.56237767080454 2.66686463883274 2.60064745878807 3.17811422517898 2.94041282830117 2.37582727690393 0.226065628754923 0.226238125793117 0.24013844227373 0.224403282139240 0.223487945442546 0.228699468480375 0.225453438758849 0.228269298644196 0.223124352397048 0.231486933772292 0.228693573528361 0.228384010072164 0.223124352397048 0.226199151577509 0.223124352397048 0.225089708428771 0.228113189534058 0.225541397568797 0.233034916251477 1 1 - 2090122 2090662 2090368.364 2089416 2091685 - gene protein_coding_gene FALSE TRUE AT1G06800.1|AT1G06800.2 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G30550.2); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921)|similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G30550.1); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.246967058508413 2.58183340969282 0.0257042019948919 1 1.97067147434712 5.16972977299723 0.246967058508413 0.0838390126012919
AT2G03870_at 9.38523549742979 9.53732550499738 9.51131024676403 9.6247546961386 9.51253168479025 9.35577098177041 9.08057480552838 9.3184728095126 9.33711217331952 9.06119817314804 9.54190548551169 9.63585402268727 9.45607499876616 9.51812000965288 9.41544117263254 9.74882104961206 9.12610007733635 9.36965007228659 9.17094645925265 0.110797313337154 0.109848446188176 0.108176570771316 0.11154579233166 0.106156468363396 0.117652922239700 0.108642416082596 0.108124538586859 0.116461900229128 0.113303427847204 0.107906811905931 0.105413639682319 0.105926201767490 0.112596306592600 0.105201467344749 0.108524685521260 0.124380689594315 0.110154278819843 0.111316127770816 2 2|0 +|/ 1180438 1181226 1180925.125 1179981 1181434 + gene protein_coding_gene FALSE TRUE AT2G03870.1|AT2G03870.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE84930.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.228716670243040 2.58045341898280 0.0257672306567110 1 1.96852891994693 18.7488710931835 0.228716670243040 0.0592368899388677
AT4G36660_at 7.60307191789005 7.87870986312612 7.26209664409955 7.16847666873677 7.51140917669217 7.56264177333842 8.67973372012152 8.62793295844601 7.38478850892285 7.64379941051478 7.80066834327891 7.88597459704982 7.93391899418553 7.7090645341723 7.89957661715715 7.61885001405617 7.89285071116082 8.02121762088665 7.38951479135534 0.187579603003586 0.183270507574668 0.194634879540264 0.196792364648655 0.178807094509446 0.187008056590978 0.184816233801938 0.188877966337825 0.193641126914105 0.183744301252122 0.182743204944488 0.182141381849071 0.18294798330633 0.188510862546547 0.183772508154169 0.180137307073997 0.17772720317885 0.177986969981602 0.181746088461708 4 4 - 17286715 17287257 17287020.818 17285738 17287433 - gene protein_coding_gene FALSE TRUE AT4G36660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65650.1); similar to BAC19.4 [Lycopersicon esculentum] (GB:AAG01119.1); contains InterPro domain Protein of unknown function DUF1195; (InterPro:IPR010608) -0.224320886891717 -2.58036943400071 0.0257710714341635 1 1.9683985317873 15.4457421316019 -0.224320886891717 0.051930551502377
AT1G60770_at 3.57357696342042 3.45584305197138 3.13461856709189 2.86720371560205 3.02051647976966 3.11326511769788 3.64837840760665 3.70071718948271 3.20126910262345 3.17153808589100 3.35494541705616 3.55572221304158 3.12233815355902 2.87317055473967 3.87423564869928 3.40666534718734 3.17046002205247 3.46923127943962 3.35740134718139 0.196201743110173 0.190313586364556 0.187014047794641 0.187014047794641 0.187014047794641 0.190979599740791 0.188630360632327 0.189280601470572 0.192895437324772 0.189728687319032 0.188817319653430 0.190023283372131 0.189739215701665 0.19577482519284 0.190890342261705 0.190150640968719 0.188000026106541 0.191769387413526 0.189734789557965 1 1 - 22370688 22371191 22370914.636 22370366 22372379 - gene protein_coding_gene FALSE TRUE AT1G60770.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02370.1); similar to H0107B07.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66166.1); similar to Os04g0320200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052458.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Malate synthase-like; (InterPro:IPR011076) -0.225392349419985 -2.58019991737782 0.0257788254381651 1 1.96813535626854 6.61263939893225 -0.225392349419985 0.0538179511908135
AT1G17480_at 2.16130958931888 2.56516512133618 2.57440932730969 2.52261687343632 2.50669736675526 2.69770116533592 2.24278005094437 1.86364566604504 2.50585206887904 2.25554571646223 2.89784373960575 2.46991272366917 2.45041341176938 2.59641682609543 2.94910742183745 2.48951879359632 2.10364396058145 2.39760688719541 2.39666045912817 0.201276718453247 0.201276718453247 0.202993343114508 0.207836022064162 0.210325648665119 0.212760059109904 0.208228231656944 0.209106120377567 0.204912870103314 0.215011765621534 0.208936086829544 0.201276718453247 0.208129428315418 0.204706072436625 0.202123594430495 0.208681770885317 0.21213609324734 0.207308222381508 0.211276796495575 1 1|0 -|/ 6006687 6007320 6006932.3 6006454 6008259 - gene protein_coding_gene FALSE TRUE AT1G17480.1 IQD7 (IQ-domain 7); calmodulin binding similar to IQD8 (IQ-domain 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G72670.1); similar to IQ calmodulin-binding re (GB:ABD28517.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.262709816009415 2.57914257187442 0.0258272422688047 1 1.96649388229404 4.85695433774368 0.262709816009415 0.101794848862555
AT4G38210_at 1.67996192244253 1.67667653822595 1.95708575955088 1.93509076714273 1.83605930761440 2.04853343063701 2.19500360058640 1.99398169989333 1.95944643826313 1.86937494943165 2.28904638542006 1.98162967295362 2.31115538734716 2.31666857210056 2.69599310679554 2.33939397382556 2.76418823258105 2.35324882026620 2.14775810358487 0.214090555399161 0.212546856778912 0.213832656996130 0.212690221127940 0.212355221294115 0.217854843244677 0.213090582524826 0.216991558250811 0.216941360638713 0.212688081037722 0.213441946341946 0.208649470866104 0.214292900448954 0.214676440495208 0.219781897809233 0.209319432259783 0.218492673091689 0.215223325330172 0.218972285337412 4 4 - 17922999 17923489 17923232.636 17922750 17923967 - gene protein_coding_gene FALSE TRUE AT4G38210.1 ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A20 precursor (AtEXPA20) (Alpha-expansin-20) (At-EXP20) (AtEx20) (Ath-ExpAlpha-1.23) (EXPA20) [Arabidopsis Thaliana] (GB:Q9SZM1); similar to ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) [Arabidopsis thaliana] (TAIR:AT5G02260.1); similar to ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) [Arabidopsis thaliana] (TAIR:AT3G55500.1); similar to Os06g0621900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058095.1); similar to expansin 1 [Musa acuminata] (GB:AAM08930.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.223504365550267 2.5784992133365 0.0258567460660416 1 1.96549515306151 4.1021034695972 0.223504365550267 0.0507642312753467
AT2G42680_at 10.5624990889879 10.7148987452371 10.8653565670577 10.9801361000170 10.9529713761704 10.5931018205247 10.5426275205117 10.6243404739628 10.2830809728294 10.4169131686224 10.7703365591396 10.5037035959467 10.6018140233226 10.4816912348970 10.4400673447367 10.6661604386320 10.4887139237026 10.4709347796527 10.2458741109607 0.0837034975606602 0.0813943056386196 0.0817205623312783 0.0822894959884667 0.0803932495004554 0.0874197128556679 0.083614167089194 0.0833481113278998 0.0871026388490207 0.0831669690461669 0.081452710619238 0.0807642199339771 0.080971410525798 0.0856108720318321 0.083974557714931 0.0803932495004554 0.0874525044410808 0.0836054488273772 0.0824523701450716 2 2|0 +|/ 17782076 17783159 17782727.444 17781980 17783397 + gene protein_coding_gene FALSE TRUE AT2G42680.1 ATMBF1A/MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated. similar to ATMBF1B/MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B), DNA binding / transcription coactivator [Arabidopsis thaliana] (TAIR:AT3G58680.1); similar to Os08g0366100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061647.1); similar to orf [Ricinus communis] (GB:CAA89698.1); contains InterPro domain Multiprotein bridging factor 1, N-terminal; (InterPro:IPR013729); contains InterPro domain Helix-turn-helix type 3; (InterPro:IPR001387); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.237219164400226 2.57815186064338 0.0258726891183268 1 1.96495595006733 21.1636000390459 0.237219164400226 0.0718923104682956
AT1G44970_at 1.21347490932653 1.56710153424953 1.29703207723492 1.65588537823693 1.03677059719996 1.03580089392887 1.07098225139970 1.62959308907018 1.63542297066116 1.99046873045269 1.49366381181188 1.17689210450242 1.16530076166825 1.16662536573617 1.51388678791519 1.44438846978756 1.58339333032123 1.39161239943497 1.88288540875691 0.200864344327964 0.203617617352774 0.202705154405840 0.214213441830706 0.205348802120347 0.209302284240716 0.207683783266619 0.203577127236376 0.206672220835568 0.205678620937612 0.20723634300689 0.208020380442224 0.204021164024969 0.208260820149426 0.206076123031974 0.203834979497858 0.200864344327964 0.207919677761278 0.204863996771415 1 1 + 17005355 17005938 17005648.909 17004557 17006126 + gene protein_coding_gene FALSE TRUE AT1G44970.1 peroxidase, putative Identical to Peroxidase 9 precursor (EC 1.11.1.7) (Atperox P9) (ATP18a) (PER9) [Arabidopsis Thaliana] (GB:Q96512;GB:Q9LPD4); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT2G18150.1); similar to PRX [Mercurialis annua] (GB:CAA62615.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.291602183543844 -2.57783873497180 0.0258870694900228 1 1.96446988817268 2.91494479909122 -0.291602183543844 0.130179729849844
AT2G41510_at 4.49107332407608 4.63542936121849 2.70001192732459 3.17662857923825 4.38059682283467 3.57318028686607 2.69926498222038 3.03930260062659 1.84796207701447 1.15698703871164 1.75351181548117 2.01631471710413 3.71498661972467 2.46418782638342 1.06208903082493 3.4388302892336 3.71452968711282 3.64706271964235 2.33831586922466 0.268219006451913 0.263901851676028 0.267090190669036 0.253882060496985 0.257771801508242 0.261958294644916 0.253882060496985 0.253882060496985 0.254290333146003 0.264129890894358 0.259751818091813 0.259887659212498 0.253882060496985 0.253882060496985 0.273960766763947 0.253882060496985 0.256122103317269 0.254594166245693 0.256960504057792 2 2 + 17323256 17323904 17323612.545 17321615 17324081 + gene protein_coding_gene FALSE TRUE AT2G41510.1 ATCKX1/CKX1 (CYTOKININ OXIDASE/DEHYDROGENASE 1); cytokinin dehydrogenase It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12) (Cytokinin oxidase 1) (CKO 1) (AtCKX1) (CKX1) [Arabidopsis Thaliana] (GB:O22213); similar to ATCKX6/ATCKX7/CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G63440.1); similar to cytokinin dehydrogenase 2 [Hordeum vulgare] (GB:AAN16383.1); similar to FAD linked oxidase, N-terminal [Medicago truncatula] (GB:ABE85203.1); similar to putative cytokinin dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:AAT01339.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Oxygen oxidoreductase covalent FAD-binding site; (InterPro:IPR006093) 0.343343798450988 2.57735397562882 0.0259093477056501 1 1.9637174193031 5.8406996938033 0.343343798450988 0.174394899868976
AT3G22380_at 9.37629018464382 9.46603948233165 9.52511613719193 9.46947595475487 9.98777225803313 9.75892459640716 9.29693729789258 9.19274350164638 9.32046221845616 9.02342508765107 9.13544836402986 9.36922412243645 9.26459360776609 9.2684961687239 8.90598736321827 9.61606830347196 9.18701125958698 9.3163776123559 9.15796743983971 0.109686230181875 0.104561279410997 0.105594047387195 0.104606708675386 0.103588672167204 0.108503047981980 0.104181095748389 0.105554696186747 0.114641740966581 0.110410064280322 0.105241382619651 0.102914224356969 0.108491806267922 0.100581958443855 0.109655700675410 0.100581958443855 0.108410407733442 0.106740353551582 0.102763413374221 3 3 + 7918292 7918831 7918560.182 7913126 7919491 + gene protein_coding_gene FALSE TRUE AT3G22380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63180.1); similar to Os07g0571100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060049.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84664.1) 0.221467777425598 2.57713512671386 0.0259194115888882 1 1.96337771782827 18.7217553093699 0.221467777425598 0.0471961555545864
AT4G15570_at 3.14609347951559 3.56874745376312 3.23881679313059 2.88625785258658 3.31294973194582 3.59987806516172 3.71180614487389 3.59541070909687 3.40696306594702 3.15793638636059 2.81643122025637 3.26606560722946 3.15306107900341 2.74951818651842 2.86665993060279 2.73622017286015 3.30367984495261 2.76989624920583 3.18817424068717 0.266874589942841 0.265075731009844 0.276844683209359 0.267480792366443 0.271574395762051 0.273337715654979 0.263005828837542 0.259639676132701 0.294597672279719 0.259639676132701 0.26253253007193 0.259639676132701 0.272115169428902 0.260017246224519 0.267653554653413 0.268273618495793 0.268385604675446 0.261093536304877 0.274731023469149 4 4 + 8897753 8898823 8898123.4 8892637 8898997 + gene protein_coding_gene FALSE TRUE AT4G15570.1 tRNA-splicing endonuclease positive effector-related similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT4G30100.1); similar to Os06g0310200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057481.1); similar to regulator of nonsense transcripts 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD62206.1); similar to putative component of a tRNA splicing complex [Oryza sativa (japonica cultivar-group)] (GB:AAO23082.1); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain SUBFAMILY NOT NAMED (PTHR10887:SF11) -0.269685932054575 -2.57643707045275 0.0259515378031121 1 1.96229421186584 6.48685307908938 -0.269685932054575 0.109286446000889
AT2G24960_at 4.54381229675926 4.7920129125062 4.7179567120031 4.49659902090316 3.92109785697093 4.35105119647737 4.50922072102692 3.97103141524603 4.44460029725041 4.82248294355311 4.47326034051721 4.30900247882352 4.41526874118928 4.02519878526442 4.36185664479505 4.4603399035442 4.23265818901381 4.31257304669355 5.21948980415421 0.218449972959421 0.211836761192989 0.210097004318528 0.213906118677419 0.212159651281637 0.228121163038461 0.210255389066686 0.215605116700725 0.218723683601320 0.211149088353024 0.215482435485296 0.213564276423646 0.215351760905821 0.218178361951233 0.20863287773213 0.20863287773213 0.216520684366734 0.214604916852385 0.209071825586834 2 2 + 10626452 10627047 10626844.364 10624342 10627113 + gene protein_coding_gene FALSE TRUE AT2G24960.1 DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02210.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90272.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287) -0.293715527609204 -2.57529825275188 0.0260040330898012 1 1.96052666603580 8.98916149042797 -0.293715527609204 0.132373852340723
AT1G54100_at 10.0952131068765 10.2799288636357 10.7212633421379 10.6142815331558 11.1278652049406 10.5580919360624 10.7627230974118 10.7422363200372 9.97687385181556 10.2591964721388 10.3192756950576 9.80493637079829 10.4442715778814 10.4727779908737 9.73678525651278 10.5178784446540 10.4148148347487 10.5110186039962 9.8589906759858 0.085314776542514 0.083556375563596 0.0839729441278039 0.0824017922721577 0.0833591499176535 0.093433322371467 0.0826349232376026 0.0841994035351264 0.0953521116471733 0.0811708813290713 0.0841452442945458 0.0819739362049611 0.0811708813290713 0.088990908580602 0.0866870055032292 0.0811708813290713 0.0899509565270754 0.084524742138035 0.0816988468569547 1 1|0 -|/ 20199120 20200017 20199516.8 20198932 20202798 - gene protein_coding_gene FALSE TRUE AT1G54100.1|AT1G54100.2 ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); similar to ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE), 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79440.1); similar to aldehyde dehydrogenase family 7 member A1 [Euphorbia characias] (GB:AAX09646.1); similar to Aldehyde dehydrogenase family 7 member A1 (Antiquitin-1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) (GB:Q41247); similar to Aldehyde dehydrogenase family 7 member A1 (Turgor-responsive protein 26G) (Antiquitin-1) (GB:P25795); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.265691501959551 2.57499847301837 0.0260178692025275 1 1.96006140188777 20.7674038489299 0.265691501959551 0.105354096614059
AT3G10850_at 10.1114754352658 10.1159284722804 10.2735447304778 10.2781271918821 10.4576996503934 10.1624650566463 9.83934760101858 9.77867339164235 9.66708733914657 9.63151857285798 9.85390237399042 9.65578936419224 9.74758196824097 9.6866948559236 10.0006626744769 9.75673619333552 9.7688657173771 9.7094344384794 9.67042491544257 0.095223595686324 0.0953160505402767 0.100646007319371 0.0975053625467312 0.0961745866482148 0.100426861212246 0.095675266345229 0.0975247939308538 0.098049675612629 0.105799211689818 0.0995930353992363 0.0944126497308053 0.0974320277379545 0.103639237288868 0.0968788761717544 0.0937110734327349 0.098997590337906 0.0942275635320313 0.099520167355402 3 3|0 -|/ 3397808 3398699 3398187.889 3397554 3399579 - gene protein_coding_gene FALSE TRUE AT3G10850.1 GLX2-2 (GLYOXALASE 2-2); hydroxyacylglutathione hydrolase glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, complete Identical to Hydroxyacylglutathione hydrolase cytoplasmic (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLX2-2) [Arabidopsis Thaliana] (GB:O24496;GB:O04844); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.2); similar to unknown [Solanum tuberosum] (GB:ABA46778.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.223858885700543 2.57348739042125 0.0260877225306605 1 1.95771630204479 19.8415587199014 0.223858885700543 0.0521712179060717
AT2G03220_at 4.77801664910979 5.21973357058523 4.13966174643706 4.31260154288578 4.29863709994667 4.61885607300112 4.7894291709987 5.06447465897147 4.42726354646474 4.24982350608577 4.79896148298352 4.80127497645857 4.39185010784973 4.47978079798977 4.66502380166513 4.40849149312781 4.10812690930133 4.38311341679788 4.59492021589916 0.215039992881657 0.216863127898358 0.207037640701126 0.207588489708039 0.213032014612412 0.206965876441963 0.209808942269392 0.207080626892127 0.214092369062584 0.204655710045730 0.207836628327535 0.207352573042995 0.209734165976935 0.217221059125327 0.223290271326657 0.211211726733220 0.210986836890351 0.204655710045730 0.206955859703049 2 2 - 970435 970944 970692.455 970256 972404 - gene protein_coding_gene FALSE TRUE AT2G03220.1 FT1 (FUCOSYLTRANSFERASE 1); fucosyltransferase/ transferase, transferring glycosyl groups member of Glycosyltransferase Family- 37 Identical to Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1) (FUT1) [Arabidopsis Thaliana] (GB:Q9SWH5;GB:O81052); similar to FUT7 (Fucosyltransferase 7), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14070.1); similar to FUT2 (fucosyltransferase 2), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G03210.1); similar to Galactoside 2-alpha-L-fucosyltransferase (Xyloglucan alpha-(1,2)-fucosyltransferase) (PsFT1) (GB:Q9M5Q1); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) -0.26994947319674 -2.57326984057526 0.0260977944740187 1 1.95737869711623 9.11696646203612 -0.26994947319674 0.109887970476901
AT2G30170_at 8.97228527347288 9.05109266643793 8.88804722250987 8.73422289989569 9.23291437465746 8.5699832231038 9.83274447762533 9.63525124611477 8.96215671122286 9.7198885917743 9.66541847363002 9.55100690864917 9.41014622232028 9.44297141591725 9.52193165080682 9.84854558351906 9.03712824238931 9.0477647427828 9.79238461356353 0.125251592498663 0.122842341156890 0.125465488414061 0.129945137455503 0.126580628066427 0.136226508701363 0.126892729990878 0.124406670279791 0.135662618404848 0.124721963414732 0.12445053762867 0.123625066134332 0.127509126909678 0.127801867876759 0.122842341156890 0.123383552976453 0.141141587163704 0.135213914202493 0.128642904224782 2 2 - 12886893 12887943 12887549.455 12886752 12888575 - gene protein_coding_gene FALSE TRUE AT2G30170.1|AT2G30170.2 catalytic similar to 5-azacytidine resistance protein -related [Arabidopsis thaliana] (TAIR:AT5G66720.2); similar to Os01g0164600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042103.1); similar to putative senescence-associated protein [Pisum sativum] (GB:BAB33413.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.283706984861372 -2.57250587343814 0.0261331943295344 1 1.95619316996391 18.5806130699049 -0.283706984861372 0.123386132555335
AT4G15880_at 5.20840207411047 5.66162391813026 5.67934224863009 5.77399944735467 5.52324736427336 5.51372166113202 5.64822887539506 5.7810203165274 5.06547380487028 5.72474517925451 5.97737301638794 6.33724754101813 5.99148591173937 6.11356040079898 5.52284483067536 6.47869533727128 5.91035358251882 5.50791735336073 5.81943505144307 0.220452126132524 0.217505174088899 0.224026610880135 0.225619831051073 0.231439378013200 0.226948334267771 0.221080686626975 0.221159059947321 0.232169845896899 0.219911792583394 0.225339067520669 0.220593966282096 0.222147955975593 0.218232738236179 0.236790213930749 0.229733224382549 0.241655582397630 0.217855980328277 0.236250595302913 4 4|0 +|/ 9014039 9015759 9014816.3 9012660 9016131 + gene protein_coding_gene FALSE TRUE AT4G15880.1 ESD4 (EARLY IN SHORT DAYS 4); cysteine-type peptidase EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G06910.1); similar to putative SUMO protease [Oryza sativa (japonica cultivar-group)] (GB:BAB19414.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) 0.245571142919390 2.5712846078101 0.0261898821735565 1 1.95429812175044 11.3569412841495 0.245571142919390 0.0833711082111505
AT3G07140_at 7.69875289071336 8.2991962382877 6.2898361571874 7.10299208901658 7.25936386223069 7.05900340809477 7.22272765197128 7.25835581226001 6.02379698917868 6.98659312396096 6.89930309011786 6.85032997962588 6.42691938994441 6.05391265785877 6.39010897568329 6.62806731550186 7.01844036393031 6.16564733192044 6.66057108993672 0.242073800737987 0.246363161478299 0.25500859945866 0.246232589488558 0.245040991464421 0.249060559023679 0.250987049414444 0.242768713346952 0.283453483460712 0.24811171358823 0.255080161726236 0.242073800737987 0.249481335236702 0.242073800737987 0.252830743997645 0.24464900166353 0.251143053045216 0.259185379582216 0.246069369062807 3 3 + 2262939 2263598 2263171.636 2261203 2263743 + gene protein_coding_gene FALSE TRUE AT3G07140.1|AT3G07140.2 GPI transamidase component Gpi16 subunit family protein similar to Gpi16 subunit, GPI transamidase component family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93627.1); contains InterPro domain Gpi16 subunit, GPI transamidase component; (InterPro:IPR007245) -0.347427599397497 -2.57032090068188 0.0262347002763261 1 1.95280283072373 13.8293176166027 -0.347427599397497 0.178436768794308
AT1G05140_at 9.54681999005125 9.79398493749745 9.73659844861175 9.79777749580016 9.9521275570749 9.70455667335114 10.4896078053255 10.3665288851169 10.0818558597422 10.4478137156128 10.1182045295733 10.1369756278427 10.0004849502612 9.98622849895598 9.78011095738901 10.1255243481619 10.0059910615185 9.71124289128104 10.0547414903588 0.104364541807010 0.103463714493253 0.103021984686483 0.106446219267394 0.105161229564598 0.110182059150545 0.106008971627214 0.114300728666629 0.123299084891475 0.102821787066474 0.108420169845127 0.105199552417737 0.106883836893393 0.105959067079136 0.106370529575648 0.102821787066474 0.110448268235295 0.119265213074930 0.111902285566454 1 1 + 1483438 1483936 1483720.182 1482547 1484055 + gene protein_coding_gene FALSE TRUE AT1G05140.1 membrane-associated zinc metalloprotease, putative similar to membrane-associated zinc metalloprotease, putative [Arabidopsis thaliana] (TAIR:AT2G32480.1); similar to hypothetical protein slr1821 [Synechocystis sp. PCC 6803] (GB:NP_441081.1); similar to Os03g0579000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050547.1); contains InterPro domain Peptidase M50, putative membrane-associated zinc metallopeptidase; (InterPro:IPR004387); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase M50; (InterPro:IPR008915) -0.231589345618333 -2.56982430199968 0.026257824527426 1 1.95203234168269 20.0124497474508 -0.231589345618333 0.0650448808691663
AT3G05000_at 7.74569365032135 7.71619170713829 6.6946424394973 7.12957410348021 7.62547223014751 7.17026904043063 7.47369250214862 7.65178094967097 7.27263031141647 7.40553871702175 7.25171140416588 7.69751892094253 7.25799346940087 7.24979455208436 7.95474325109782 7.04635140544559 7.05641051538582 6.98481728186344 7.42087893630764 0.189945300578322 0.195872632510035 0.199968754584752 0.204492449263217 0.190168625297103 0.197606198411101 0.196732071631424 0.199696639927691 0.196384866824163 0.191300069439213 0.198693810172749 0.189087287842430 0.190556687439257 0.19816581197661 0.191992149168316 0.194516581864346 0.200429158600828 0.188987256173865 0.190510635780673 3 3|0 -|/ 1387657 1388620 1388015.1 1387181 1388762 - gene protein_coding_gene FALSE TRUE AT3G05000.1 transport protein particle (TRAPP) component Bet3 family protein similar to Transport protein particle (TRAPP) component, Bet3 [Medicago truncatula] (GB:ABE83658.1); contains InterPro domain Transport protein particle (TRAPP) component, Bet3; (InterPro:IPR007194) -0.272890985232277 -2.56844024947784 0.0263223792269794 1 1.94988506522750 14.7402980386695 -0.272890985232277 0.113342396941222
AT1G02970_at 1.90387578921932 1.71739468241256 1.28847855215695 1.49826192340924 1.51351444503712 0.856208097738577 1.98481286189747 2.04354903825599 1.36063126337551 1.88655719168226 1.75744890727075 2.20368485078884 1.48297520835774 1.69160243048167 1.93419662165214 1.21996268516679 1.37142152591542 1.72721618699069 1.60772029644355 0.234200398905397 0.22771314464562 0.241225576489867 0.232695729239037 0.22771314464562 0.237006048504861 0.228012877484941 0.22771314464562 0.249078803217333 0.249201447514901 0.230232458776461 0.228509246801937 0.239569680640294 0.247922985558685 0.228495938539254 0.228624697808533 0.234115629268049 0.229748668853862 0.235697624770619 1 1 + 675360 676090 675743.818 673306 676378 + gene protein_coding_gene FALSE TRUE AT1G02970.1 WEE1 (Arabidopsis wee1 kinase homolog); kinase/ protein kinase Protein kinase that negatively regulates the entry into mitosis. similar to CPK29 (calcium-dependent protein kinase 29), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G76040.2); similar to wee1 [Glycine max] (GB:AAS13373.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.284015851724983 -2.56842026989745 0.0263233122532797 1 1.94985406944031 3.24669515838846 -0.284015851724983 0.124103946106065
AT2G45450_at 3.13964292749 3.74822013367269 3.42500181620372 3.61923699138835 3.62342970550166 3.59259897041208 3.3808337710189 3.41973609676523 4.76324792249792 4.47976135710236 4.32081196970039 4.45146334771209 3.73610785711129 3.82626677579968 4.21497757159852 3.95418233864817 3.38926220606632 4.12984121912662 4.81693585195525 0.234037647207787 0.216333259409875 0.220813484031403 0.223262212471704 0.226268534655875 0.218006893650723 0.220870897985371 0.221541215089182 0.224101418363885 0.227799632387661 0.221603362237008 0.220134247067031 0.219929741852517 0.21906265230721 0.216333259409875 0.216333259409875 0.223365955797812 0.216333259409875 0.231870482636951 2 2|0 -|/ 18740622 18740969 18740786.7 18740349 18741201 - gene protein_coding_gene FALSE TRUE AT2G45450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60890.1) -0.270412788912521 -2.56826793772411 0.0263304270826746 1 1.94961774665317 7.83834382050936 -0.270412788912521 0.110884354757274
AT1G76700_at 5.24996160962864 5.16927821653377 5.42483169079383 5.33669260252406 5.42560225364113 5.96569030995677 4.55932110934673 4.23888906880360 4.58964953259364 4.12700693076181 4.1819855697375 3.98992486264162 4.0577768343534 3.65037481078314 4.35760429374838 4.36740326606787 4.43065901871061 4.27032321724051 4.35401118964453 0.237727204165562 0.230565550317086 0.239606866488801 0.232474539807822 0.229958670679317 0.240924108083049 0.231241178927292 0.231399034797337 0.239859244687025 0.244428724391785 0.232590264726730 0.228368576267894 0.231906416077464 0.236222397552946 0.237155524775597 0.233080213854511 0.232168607351135 0.243733792400282 0.233870968728751 1 1|0 -|/ 28785521 28786614 28786064.5 28785302 28788142 - gene protein_coding_gene FALSE TRUE AT1G76700.1 DNAJ heat shock N-terminal domain-containing protein Identical to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10) (ATJ10) [Arabidopsis Thaliana] (GB:Q8GYX8;GB:O04662;GB:Q9SRE3); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21080.1); similar to DnaJ-like protein [Brassica juncea] (GB:AAW50121.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.270104489822242 2.56777281935897 0.0263535651650154 1 1.94884965299847 9.43135620856708 0.270104489822242 0.110626486157782
AT1G13920_at 2.80964240632108 3.00782055476788 2.95993743237824 2.77887727155744 3.85478190044866 2.85850304159530 3.18571217379172 3.30921466938142 3.12101616551122 2.65660266148565 3.61356785453174 3.71574305369893 3.28643466513934 3.73118779952674 3.51121540711638 3.32746758225575 3.32302963405538 3.54161158397371 2.7540252477309 0.184880897258674 0.183670583035324 0.185875462707144 0.183670583035324 0.205924184371361 0.188733686064697 0.183670583035324 0.186832580547007 0.184423678009955 0.186034371658605 0.191452190576344 0.184473796223839 0.194347929340072 0.189400315715911 0.188262844717610 0.186017022133023 0.184430663367212 0.184693567263736 0.193971763677657 1 1|0 +|/ 4759006 4759723 4759287.2 4758185 4759751 + gene protein_coding_gene FALSE TRUE AT1G13920.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT1G69325.1); similar to Os10g0325400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064352.1); similar to Hypothetical protein [Oryza sativa] (GB:AAM08792.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.348664149862024 2.56657777828031 0.0264094947971352 1 1.94699584433183 6.27064295917014 0.348664149862024 0.179833839690693
AT3G01400_at 6.68700745165745 6.97204613195307 6.84264451531447 6.95129165485537 6.76197739207888 7.38472567347945 5.89527558737954 6.5584907849975 6.6731907896013 6.48956352895615 6.79361647972485 6.69918262011258 6.66214452327658 6.92163568225708 6.49977530123655 6.89796331202538 7.16136777542304 6.56216521661028 6.54215300626358 0.175006456207562 0.179400592702066 0.186921690558122 0.182667798957872 0.176336384506651 0.187534319098651 0.184624965060663 0.182439017593400 0.185253469511856 0.184431088057682 0.186105662378123 0.179057786994436 0.175842940155132 0.178854766918262 0.192825990903884 0.178800736770051 0.182409814737775 0.176171619852888 0.187545007071443 3 3 + 152395 152964 152691.818 151769 153224 + gene protein_coding_gene FALSE TRUE AT3G01400.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G58680.1); similar to Os07g0587500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060138.1); similar to Os03g0435300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050437.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88245.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.331691871080717 2.56652230593752 0.0264120938170031 1 1.94690979619236 13.4281993016846 0.331691871080717 0.166053238130405
AT1G20090_at 7.85099719170708 8.01884971215759 8.18647223919316 8.28367733986481 8.99776990818417 8.60712488158398 8.64913110522887 8.77173456673204 9.12154412429481 8.22628786905153 9.51492111957322 8.9057826428929 9.09972307265399 9.2721205648238 8.84418628878591 8.51019929544174 8.47278648580624 8.7788934942995 8.56824999961 0.127331766960759 0.122778935344127 0.125277011117662 0.124938989010632 0.124325494464854 0.137257308748382 0.123293949451153 0.12413609036758 0.135345031869798 0.123806437127031 0.127403950044310 0.121020716063532 0.131609424330308 0.129448757109579 0.129835591739720 0.120343993856278 0.132046046338565 0.120880822865211 0.120862579865269 1 1|0 +|/ 6967236 6968348 6967804.1 6966913 6968924 + gene protein_coding_gene FALSE TRUE AT1G20090.1 ARAC4/ATRAC4/ATROP2/ROP2 (rho-related protein from plants 2); GTP binding Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment (PMID 16141452). Identical to Rac-like GTP-binding protein ARAC4 (GTPase protein ROP2) (ARAC4) [Arabidopsis Thaliana] (GB:Q38919); similar to AT1G75840.1/ATGP3/ATROP4 (RHO-LIKE GTP BINDING PROTEIN 4), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G75840.1); similar to Rac-like GTP-binding protein 5 (OsRac5) (GTPase protein RacD) (GB:Q6EP31); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.241107785566341 2.56645666032248 0.0264151698056219 1 1.94680796776423 17.2024799271749 0.241107785566341 0.0784032067577212
AT2G01490_at 9.42977350922587 9.47868783764403 9.90809946857194 9.81697418503648 10.2998824041257 10.0562239497269 9.64314752182623 9.44225327638344 9.30536022595703 9.02665011039535 9.0525688653831 8.72577455413693 9.26573858495992 9.19230306010145 8.90918774349795 9.1681978271093 9.21922070016586 9.14044921266533 9.12768472133573 0.0954023373165685 0.0903413189932162 0.0909756758611035 0.0925895120992216 0.0978581304051144 0.0976142687117478 0.0934289232339496 0.094929973990224 0.0922399921561402 0.0916315747068646 0.09425310439841 0.0923211344030411 0.0919905700459177 0.0964474532240641 0.0933445116163458 0.0952973067796512 0.0934018334730018 0.0985390700620417 0.0975670414391066 2 2 + 222107 222957 222525.545 221245 223417 + gene protein_coding_gene FALSE TRUE AT2G01490.1 phytanoyl-CoA dioxygenase (PhyH) family protein similar to putative LN1 protein [Oryza sativa] (GB:AAK50124.1); contains InterPro domain Phytanoyl-CoA dioxygenase; (InterPro:IPR008775) 0.226388924100905 2.56635047789486 0.0264201459936971 1 1.94664326017315 18.8780861462668 0.226388924100905 0.0575063457633959
AT2G46690_at 9.0972494655694 9.25066688984611 9.31318694820512 9.31927419103401 10.2823045920750 9.78263084332218 10.0998934282488 9.7422294635207 8.3336068179515 9.08995857887123 8.92136272028817 8.73280088998577 8.73496168394822 9.18538570633483 8.4630392710307 9.33090047538702 9.90388462522593 9.01794764697047 8.4526556345385 0.111606239809874 0.106035439245467 0.113012870649336 0.108569361016527 0.106035439245467 0.114440198471534 0.108346570844448 0.109971294653823 0.123814412987735 0.110435395675573 0.111811717393897 0.106035439245467 0.111460682469338 0.110260318953455 0.114835048661044 0.108964513400239 0.108700109297935 0.112733254960613 0.108892695612078 2 2 + 19187998 19188315 19188173.455 19187800 19188537 + gene protein_coding_gene FALSE TRUE AT2G46690.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G61900.1); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00880.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.268858849402731 2.56549380997644 0.0264603270772174 1 1.94531445818385 18.4417756716527 0.268858849402731 0.109609513654921
AT2G29920_at 1.48497493666638 2.09692500896200 1.91895460748908 2.40750790437660 1.68455008720784 1.61947497187034 2.12657949280105 2.12308107714145 2.28116423154627 2.52561989466008 1.85435788640159 1.87721758116029 1.92599467823789 1.66113616423551 1.87809940731372 1.94399459905863 1.70864271237154 2.05317172921008 2.40949847230023 0.194431029629496 0.19052576138035 0.193427140557542 0.196212911092764 0.194614085667075 0.204251284042356 0.191114822965428 0.190535982684144 0.19223000717803 0.202844990432103 0.202226731131903 0.19052576138035 0.194003708244111 0.196974438226995 0.197989331080400 0.195352340206062 0.199613950244040 0.19052576138035 0.200890536903798 2 0|2 /|+ 12761705 12762425 12762269.125 12761571 12762461 + gene protein_coding_gene FALSE TRUE AT2G29920.1 unknown protein -0.296434462121815 -2.56431923200157 0.0265155171430985 1 1.94349265391858 4.06688319960643 -0.296434462121815 0.13597893124327
AT1G10510_at 6.77685535747013 6.53528487316202 6.62390723819645 6.47669540624141 6.62020598690534 6.32036110310625 7.40154801514443 7.22821879360837 6.55069377554318 6.92667201578066 6.53808988889533 7.2248900668332 6.58353406035712 6.6939434735973 7.0254529729918 6.9226722990938 6.6145382766574 6.07765666994285 6.66795450652643 0.171510706552492 0.168659621785229 0.175531506886156 0.181354424411803 0.174859886827673 0.180180656965499 0.172341807168787 0.183584355991142 0.172751569712194 0.172771921437873 0.174160038658462 0.174505894301101 0.176580002640335 0.174339550401312 0.171638423922283 0.176059808878086 0.183235898880704 0.181848176477841 0.172815164088060 1 0|1 /|+ 3464790 3465524 3465145.222 3461636 3465787 + gene protein_coding_gene FALSE TRUE AT1G10510.1 EMB2004 (EMBRYO DEFECTIVE 2004); protein binding similar to RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1), RAN GTPase activator [Arabidopsis thaliana] (TAIR:AT3G63130.1); similar to deliriumA-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37894.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor type; (InterPro:IPR007091); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.240096939318930 -2.56415605078132 0.0265231935177686 1 1.94323956588045 13.4604865864774 -0.240096939318930 0.077388063499988
AT2G19960_at 0.597179158467276 0.995561377159615 0.218798916375599 0.656155652591096 0.696828260135448 0.728742634431994 0.787611877879747 0.868221807753524 0.923665938334645 1.13665874444764 0.274354794115340 0.618729489539218 0.792964283880231 0.673271813937586 0.57390459479926 0.534588420292204 0.95355358235539 0.714437520661459 0.730830174655072 0.191786209200558 0.199987854105281 0.196342174377838 0.192347577138128 0.196364627042957 0.194707815577805 0.193825982196856 0.1923008681612 0.195135452031337 0.194322240095323 0.191704577174415 0.193929606507636 0.190752176865602 0.194563805089331 0.195384562495374 0.194262918408057 0.195044478001905 0.203781939066521 0.194234973386544 2 2 + 8629388 8629752 8629552.636 8629296 8629817 + gene protein_coding_gene FALSE TRUE AT2G19960.1 hAT dimerisation domain-containing protein / transposase-related similar to hAT dimerisation domain-containing protein / transposase-related [Arabidopsis thaliana] (TAIR:AT2G06500.1); similar to Os11g0628800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068311.1); similar to Hypothetical protein with similarity to putative Ac-like transposases [Oryza sativa] (GB:AAM08782.1); contains InterPro domain HAT dimerisation; (InterPro:IPR008906) -0.26271078973152 -2.56356037951062 0.0265512336619488 1 1.94231572403664 1.47981771806264 -0.26271078973152 0.103472478251181
AT2G46100_at 10.8152829195744 11.0073633959322 11.2734667298714 11.2757330269754 11.4426869528083 10.9371133911804 11.5882762586856 11.3316114795594 10.2868316913304 10.6014601117004 11.0610308716656 10.8084178787326 10.9052318419296 10.9511386310917 10.7015639153398 11.2182622776209 11.1292159946710 10.7331331819047 10.4902583182508 0.119042791365288 0.119042791365288 0.119122411719079 0.119042791365288 0.119965551560835 0.130570008623921 0.119042791365288 0.119042791365288 0.142271906673461 0.125410268356405 0.123525569039664 0.119042791365288 0.119042791365288 0.119042791365288 0.119042791365288 0.119042791365288 0.135931872307980 0.130283352545211 0.119042791365288 2 2|0 +|/ 18960669 18961085 18960837.2 18960353 18961682 + gene protein_coding_gene FALSE TRUE AT2G46100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04890.1); similar to H0404F02.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66733.1); similar to Os04g0578200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053638.1); contains domain NTF2-like (SSF54427) 0.262799564398307 2.56325041863576 0.0265658360419991 1 1.94183501161370 21.9079497849301 0.262799564398307 0.103599125067402
AT1G72550_at 8.62046467830567 8.72554882371598 8.2571582713691 8.26405966736557 8.96537559358074 8.45572895363642 8.8450529478581 8.84897196857325 8.83652235018665 8.36564749632803 8.41497203179166 8.51656905480456 8.36718024710581 8.36927112458012 8.5365604978936 8.4451578563626 7.9977398016949 8.41730273765234 8.62617412780527 0.154161999258961 0.150141769177263 0.1681195659196 0.14896673294511 0.161608271208597 0.153874878729588 0.153742698514706 0.153524888959652 0.161178499323775 0.14896673294511 0.155127460522444 0.152916045888970 0.154876038919548 0.149995298403155 0.155365928505510 0.14896673294511 0.161756384557899 0.152096607249881 0.150369534114652 1 1|0 -|/ 27323633 27324598 27324131.111 27323350 27327699 - gene protein_coding_gene FALSE TRUE AT1G72550.1|AT1G72550.2 tRNA synthetase beta subunit family protein Identical to Probable phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS) [Arabidopsis Thaliana] (GB:Q9SGE9); similar to Os05g0558900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056297.1); similar to B3/4 [Medicago truncatula] (GB:ABE85094.1); contains InterPro domain B3/4; (InterPro:IPR005146); contains InterPro domain Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic; (InterPro:IPR004531); contains InterPro domain tRNA synthetase, B5; (InterPro:IPR005147); contains InterPro domain Putative DNA binding; (InterPro:IPR009061) -0.250391402789787 -2.56251419248426 0.0266005516258128 1 1.94069325053087 17.1190661932634 -0.250391402789787 0.0900625025582925
AT2G30890_at 2.32768955803315 2.71559031136131 2.50111161094772 2.48850240069062 2.19697304166246 2.07838726299058 3.04164861834937 3.18827483279749 3.31730569234301 3.45479390420277 3.98502078445627 3.89990481272278 3.14794448320392 3.48851311305567 3.81773601712822 3.24017861067863 3.29858723361925 3.30729324031656 3.7182800776892 0.223436268919867 0.221554088231866 0.22511989698549 0.221917992464562 0.229831514297083 0.227210122399154 0.229409010587013 0.226120661386219 0.219634298219549 0.219731561119678 0.220440216548421 0.217708081541882 0.227068186657211 0.215652140963054 0.215652140963054 0.215652140963054 0.224698408423981 0.228182576568631 0.231478854714180 2 2|0 +|/ 13155422 13156675 13156302 13154698 13156896 + gene protein_coding_gene FALSE TRUE AT2G30890.1 membrane protein, putative similar to cytochrome B561-related [Arabidopsis thaliana] (TAIR:AT4G18260.1); similar to cytochrome B561-related protein [Beta vulgaris] (GB:CAK22421.1); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.237851594454908 -2.56245801934882 0.0266032022132072 1 1.940606137788 6.07724246042542 -0.237851594454908 0.0746721991518096
AT2G38240_at 1.85778957452854 2.2397296004014 2.77443883460805 3.04370011479461 1.8975663651139 2.8228937978182 2.03098972627946 2.29732891393063 1.89915736746788 2.52695610902829 2.40401076975275 2.25001733275263 2.47429359218667 2.30232151052580 2.44022655992561 2.3880421266208 2.45380988867609 2.71356508053368 2.31426446718204 0.232782639545722 0.220264202632816 0.234627588980716 0.240073331584419 0.239106251008909 0.225783351370703 0.223108720372480 0.230183399314382 0.237511179459360 0.220047948816908 0.221988154133422 0.220498477068918 0.218473892669626 0.21906217968061 0.219890535434820 0.217956838566074 0.229604298632312 0.234834844996701 0.222930209258603 2 2 - 16019811 16020522 16020136.091 16019613 16021831 - gene protein_coding_gene FALSE TRUE AT2G38240.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G05600.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE94015.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.354841767013848 2.56234731411762 0.0266084267144716 1 1.94043445812472 4.70809386869159 0.354841767013848 0.185220823100855
AT2G47880_at 8.46756466274331 8.86424733431166 6.14193620774463 7.17105832333866 7.89552440821114 7.86701836329721 6.72032418762134 7.40585735943738 6.29436674736809 4.26188562471817 6.96414041874524 8.18001387277903 7.39908397582869 6.50809511142034 7.58725607869249 8.85512792610681 6.69091537565359 6.78566835445875 7.3331859650544 0.194928592251117 0.197425641980818 0.203176137753934 0.198459488087604 0.191970443772249 0.191421474853655 0.196556254386317 0.189095216882491 0.205038181041238 0.209742126042343 0.206584461853767 0.190240532788971 0.194950902548067 0.213965321997778 0.190904233630474 0.191045627273959 0.198294230472575 0.210366696837706 0.196874761172471 2 2 + 19612201 19612470 19612343.455 19612110 19612741 + gene protein_coding_gene FALSE TRUE AT2G47880.1 glutaredoxin family protein Identical to Glutaredoxin-C13 (AtGrxC13) (GRXC13) [Arabidopsis Thaliana] (GB:O82255); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G62960.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.406263733224943 2.56222809840461 0.026614053978794 1 1.94024958191776 14.2339082316336 0.406263733224943 0.224785804540015
AT4G22740_at 9.24927415088148 8.99997949895355 9.61918140303288 9.46178916561922 9.58776166714068 9.44303578398232 9.07578383343263 8.95309283448214 8.92307447883546 8.90249408204321 9.01451037067547 8.68020082804244 8.97834164247321 8.72117706675505 8.68089368881836 8.92142532746735 9.17686390370058 8.75701589672432 8.78054966368829 0.100480184980832 0.101579737977846 0.101647832225264 0.101475106761771 0.0988827662829234 0.101853136633611 0.100664521083552 0.103094953111363 0.114106399244738 0.104140848882751 0.102097549112937 0.0988827662829234 0.104742266932957 0.102089656946490 0.100653067024545 0.0988827662829234 0.10599123629456 0.109941175737505 0.107883958819357 4 4|0 -|/ 11944102 11944874 11944526.4 11943860 11945967 - gene protein_coding_gene FALSE TRUE AT4G22740.1|AT4G22740.2 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45380.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71223.1) 0.228003470616387 2.56210794085362 0.0266197268847305 1 1.94006324656072 18.1662421249095 0.228003470616387 0.0606725807079712
AT3G09320_at 5.87968018004153 6.3032492759445 5.79012049799725 6.25804215683189 7.9057600805885 6.86021906435534 5.92330866478222 6.02581527536129 5.27532039416155 4.96747302522007 4.80327835175795 5.30998259462517 5.03869694419505 5.56488627083092 5.22051992146899 5.44451227049978 5.68597935029816 4.72552541144483 5.10481785418746 0.228066391355742 0.222993908805646 0.23951545891902 0.231764118450642 0.224624680317603 0.245736558058833 0.225960501241536 0.223388184882810 0.222519934340313 0.225303404010075 0.224552482918765 0.221262171140556 0.224827685990160 0.230376352154334 0.223890115329319 0.2205707707737 0.225854161282945 0.225674228738357 0.227962748058939 3 3 - 2862180 2863143 2862509.455 2861749 2864251 - gene protein_coding_gene FALSE TRUE AT3G09320.1 zinc finger (DHHC type) family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04270.1); similar to Os05g0458000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055742.1); similar to Os01g0844400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044780.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE87833.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.389412157888971 2.5620288897871 0.0266234597105715 1 1.93994065821865 11.5382959314444 0.389412157888971 0.212090834117293
AT4G04860_at 7.23957209792651 7.35412916289712 7.18479799119227 7.37162588207114 8.32264482242986 7.42130694053359 7.29002198873512 6.90735488394328 5.5302554406919 5.10037288424409 5.8616593958571 5.64851685795 5.86619563659815 5.66785206503308 5.01249008625552 5.58535506932932 5.71209781150654 6.13753383474761 5.51879706388968 0.258185242013079 0.254825139651683 0.270922588035996 0.254742506804048 0.261080018672986 0.273851371615872 0.266827554214886 0.254742506804048 0.275210890770115 0.260990733833506 0.258109725741421 0.254742506804048 0.256083656086302 0.269555850234875 0.254742506804048 0.258038036233292 0.266248459072064 0.270641446528719 0.254742506804048 4 4|0 +|/ 2460384 2461327 2460915.8 2459878 2461737 + gene protein_coding_gene FALSE TRUE AT4G04860.1 Der1-like family protein / degradation in the ER-like family protein Identical to Derlin-2.2 (AtDerlin2-2) (DER2.2) [Arabidopsis Thaliana] (GB:Q9ZS88); similar to Der1-like family protein / degradation in the ER-like family protein [Arabidopsis thaliana] (TAIR:AT4G21810.1); similar to Os03g0852200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051921.1); similar to Derlin-2.2 (ZmDerlin2-2) (GB:Q4G2J3); contains InterPro domain Der1-like; (InterPro:IPR007599) 0.340322587032824 2.56157851877935 0.0266447362515894 1 1.93924225776417 12.9212339166836 0.340322587032824 0.173648267821793
AT3G10070_at 3.98014727032215 3.75901263483713 3.75628144752887 3.60014042133859 3.44835400803882 3.73142490571479 4.02918653620138 4.08403602907749 3.88979821816897 3.84935551529543 3.88384380719538 4.22666736948772 3.83205446262911 3.90159563262054 4.03878167122993 3.67471931698524 3.85653649268187 3.75526387930828 4.36116135876791 0.180772257706095 0.179904387412721 0.180591455096967 0.183482642109993 0.182973509185850 0.180468794197547 0.173887806900904 0.175650960273156 0.182767056384545 0.183948271145469 0.182019487424411 0.180026106393348 0.181958887163828 0.182960937813077 0.173887806900904 0.176225267743465 0.17734337797788 0.174909393047175 0.179568056328394 3 3|0 -|/ 3104200 3105546 3104876 3103885 3106820 - gene protein_coding_gene FALSE TRUE AT3G10070.1 TAFII58 (tata-associated factor II 58) putative TBP-associated 58 kDa subunit protein (TAFII58) similar to transcription initiation factor IID (TFIID) subunit A family protein [Arabidopsis thaliana] (TAIR:AT1G17440.2); similar to TATA binding protein associated factor [Solanum tuberosum] (GB:BAE46416.1); similar to Os01g0858500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044860.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.233150478507223 -2.56099218040647 0.0266724612616804 1 1.93833303982362 7.76338350317975 -0.233150478507223 0.0684426594532132
AT1G09150_at 8.3776785709709 8.31963707063773 8.0312312954271 8.18953805048974 8.7580827177772 8.06777174642672 8.14610246353255 8.12107166554527 7.24978540443558 7.52483699929719 7.87529495533055 8.04501563993839 7.79766711407336 8.03419462589837 8.2698145355772 8.14521417956513 8.10085726305457 7.67690668594629 7.57399334762162 0.172053430328443 0.168996424648085 0.170013885840328 0.170171957840213 0.168269066025445 0.177806555667475 0.170914018319107 0.181263329937654 0.193736896678491 0.173495700791540 0.172313017062483 0.168269066025445 0.172262340389157 0.192272573086102 0.175857060781613 0.173894434054520 0.182916491697586 0.180995715520149 0.177564580834892 1 1|0 +|/ 2947252 2948750 2947900.333 2946231 2949161 + gene protein_coding_gene FALSE TRUE AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein similar to eukaryotic translation initiation factor SUI1 family protein [Arabidopsis thaliana] (TAIR:AT1G71350.1); similar to MLL [Hordeum vulgare subsp. vulgare] (GB:AAV80392.1); similar to Os01g0314300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042871.1); contains InterPro domain Uncharacterized domain 2; (InterPro:IPR004521); contains InterPro domain PUA; (InterPro:IPR002478) 0.282057775498387 2.56076191851122 0.0266833569541018 1 1.93797598871163 15.9727188019548 0.282057775498387 0.123049730148911
AT1G79150_at 2.48181616815533 2.86422022924872 2.46599729128749 2.35552975267947 2.36612324039032 2.08709400297844 3.18468257280071 2.98787803894471 1.94538935880590 2.08906609710327 1.91996236953628 2.40681659837022 2.08361324902262 1.72834416369502 2.30113782040782 1.91529969622474 2.17952128510566 1.90171232540551 1.95111089226151 0.155110548035218 0.153424460558036 0.154149942311518 0.154001877469655 0.153580575469124 0.151214342826173 0.162110242618973 0.165906823017955 0.154556889111969 0.155905225388801 0.153253478185314 0.156134910166973 0.154701632695033 0.154730609472449 0.154002589601826 0.150851171283582 0.156275753681363 0.153253972378959 0.155578180403416 1 1|0 -|/ 29777886 29781139 29779352.944 29777481 29782861 - gene protein_coding_gene FALSE TRUE AT1G79150.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60030.1); similar to Os06g0498500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057700.1); similar to Protein involved in the nuclear export of pre-ribosomes (ISS) [Ostreococcus tauri] (GB:CAL52412.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Nucleolar complex-associated; (InterPro:IPR011501); contains InterPro domain CBF; (InterPro:IPR005612) -0.250800512353005 -2.56053801793445 0.0266939558354948 1 1.93762880671176 4.62403752265792 -0.250800512353005 0.0907548029231966
AT1G06840_at 5.14576460296529 4.45502418857263 5.02732146719025 5.03737488748959 6.0079141050545 5.72123242197203 4.49849851378124 4.50227823901038 6.12434063365596 4.94652937278533 5.50674937894899 5.47260394033657 5.16515156471189 5.82374076262048 5.39862270307568 5.18031755239081 4.44910601880556 5.09993028718304 5.37657323541278 0.206517610295221 0.203411148110352 0.222882921880461 0.215212270445535 0.211446402927486 0.216174118317025 0.208645306295895 0.210697941913992 0.214968204522306 0.207192799762846 0.203292835166538 0.201398893481317 0.202335352234966 0.203772002985842 0.20597459511041 0.204398152617478 0.208389574619313 0.208815248553614 0.203639680133051 1 1 - 2097871 2098583 2098247.091 2097746 2103478 - gene protein_coding_gene FALSE TRUE AT1G06840.1 leucine-rich repeat transmembrane protein kinase, putative similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G01950.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G37450.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53590.1); similar to Protein kinase; Adipokinetic hormone [Medicago truncatula] (GB:ABE77704.1); similar to Protein kinase [Medicago truncatula] (GB:ABE77702.1); similar to unkown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56867.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.288808014867658 2.56025178404917 0.0267075114474384 1 1.93718497746023 10.4216804815681 0.288808014867658 0.129435641467605
AT4G28720_at 2.3877792106942 2.36285445320218 1.89375212582763 1.72749361808626 1.96546584240787 2.11857422531443 1.78724775196635 1.59724797600761 3.44189579579589 2.40966873099863 3.07214383575142 2.86099173394246 3.04509313991112 2.08222405059999 3.50952256906714 2.02181703252824 2.16887882165228 2.02754498932382 2.95473668117839 0.197726471442259 0.199169088084039 0.198084067363837 0.205914727553835 0.20713006674347 0.200240152790599 0.199144396196329 0.207109642146779 0.200457440805559 0.201986284297288 0.198280157612358 0.200383828457471 0.201168583480987 0.197981402338805 0.208366215360228 0.197726471442259 0.205906911772959 0.20926691434817 0.204187855262047 4 4 + 14193433 14193949 14193760.545 14192589 14194262 + gene protein_coding_gene FALSE TRUE AT4G28720.1 flavin-containing monooxygenase family protein / FMO family protein similar to SUPER1/YUCCA5 (SUPPRESSOR OF ER1), monooxygenase [Arabidopsis thaliana] (TAIR:AT5G43890.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G04180.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I; FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Medicago truncatula] (GB:ABE89940.1); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.222183804726226 -2.55997379150199 0.0267206832430241 1 1.93675393489656 4.74703227923233 -0.222183804726226 0.0512794657977281
AT3G28460_at 6.1600902876988 6.25201652765499 5.3081650187618 5.18106530572045 6.15964417111639 6.23026119208518 7.05104443707552 7.15229214999052 6.21937080116097 6.59423258793181 6.94117392781788 7.46161566068318 6.50995445052665 6.72159717251327 7.38031134431448 6.73424243041812 6.76783410376605 6.23595507352488 6.20072843026286 0.252030232776547 0.230620739216509 0.238799466666339 0.242972641537623 0.23687740719045 0.247285452559387 0.252561170863468 0.236947637037746 0.239528683431015 0.243316760671408 0.233771634389648 0.239598180582908 0.241653343522052 0.236525154060783 0.230887801539189 0.230620739216509 0.255583318541934 0.247572468904489 0.23921348713221 3 0|3 /|- 10673948 10674729 10674332.875 10673278 10675632 - gene protein_coding_gene FALSE TRUE AT3G28460.1 similar to Conserved hypothetical protein 95 [Medicago truncatula] (GB:ABE78634.1); contains InterPro domain Conserved hypothetical protein 95; (InterPro:IPR004398) -0.214051007345161 -2.55753539965450 0.0268364928547238 1 1.93297340663394 12.7779204497117 -0.214051007345161 0.0345427832244411
AT1G21790_at 5.50641329000094 5.92346214298926 5.48603156884999 5.63603175608684 6.94179698598302 6.51620660176333 7.42439364707902 7.12694774857986 4.64641800018998 5.29034977349415 5.62471686933143 5.6070184809106 5.50549474686221 5.91615195304308 5.57664485772469 6.79112460752289 5.8874754736377 5.42259508672589 4.7271424722736 0.232922780771097 0.227741556238257 0.233651337589922 0.233642945680655 0.232854357897784 0.230963356966424 0.234573435471259 0.232098316019173 0.243960816578298 0.236080787295893 0.231280199602142 0.240339702328393 0.233044618412746 0.228359905924238 0.232014147661058 0.231522127292212 0.227741556238257 0.239706419272349 0.227925927869911 1 1 + 7654977 7655581 7655244.545 7654173 7655872 + gene protein_coding_gene FALSE TRUE AT1G21790.1 similar to Os01g0869600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044928.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81707.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634) 0.276572599246211 2.55727655563361 0.0268488154029128 1 1.93257212501093 11.6598468883944 0.276572599246211 0.118138303436038
AT4G16250_at 5.14016704419102 5.72261159373486 5.09756184898299 4.91853452190102 4.90939853289792 5.10695006191655 4.79766956678005 5.02003899566758 4.80790150832573 5.15600170217311 4.48678774818304 5.01105189885494 3.99814676567325 4.62245798359098 4.87855457283065 5.09421934132327 4.27535360202776 4.47437836377001 5.01994012932755 0.220927804754362 0.215548804123108 0.220303770292519 0.214276950377181 0.213314600431966 0.218142796551229 0.220952754732148 0.213740369759985 0.225453527943221 0.213314600431966 0.221211777117136 0.213545461256191 0.216566977656269 0.218293778846036 0.236767287429912 0.213314600431966 0.234296775164669 0.225993365127354 0.216694061207659 4 0|4 /|- 9195632 9196221 9195946.6 9195617 9199501 - gene protein_coding_gene FALSE TRUE AT4G16250.1 PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ signal transducer Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo. Identical to Phytochrome D (PHYD) [Arabidopsis Thaliana] (GB:P42497;GB:O23472); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to phytochrome B1 [Populus balsamifera subsp. trichocarpa] (GB:AAG25725.1); similar to phytochrome B [Cleome hassleriana] (GB:AAW56607.1); similar to Phytochrome B (GB:P34094); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.27575311037291 -2.55724874148940 0.0268501398562164 1 1.93252900560176 9.88898313632927 -0.27575311037291 0.117341680536048
AT1G03590_at 5.83188250592792 6.40055422578188 5.48247341927946 6.089918239935 6.46964503516103 6.34769049140265 4.4535038873357 5.3190632637691 6.11569759053201 5.03989484559131 6.36330131416048 5.71970661165239 5.52372700536545 6.38488594085336 5.77580137157713 6.4044347638236 5.32043776672058 5.92403771491938 6.10819795877885 0.257498027013034 0.268655734440981 0.260731079213065 0.26584894961487 0.255791924459694 0.267403198611744 0.253504089074731 0.268639873505546 0.25234102568126 0.252904244726271 0.254914988945332 0.252398084899218 0.261714858528811 0.260213523703379 0.260035112719301 0.257399548792336 0.255019423875061 0.265806631299909 0.250462490035565 1 1 - 894506 895140 894848.455 894254 896439 - gene protein_coding_gene FALSE TRUE AT1G03590.1 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G03415.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE77622.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.384312794287107 2.55639645027079 0.0268907554034452 1 1.93120776256044 11.6401605632915 0.384312794287107 0.208847848946925
AT2G39970_at 7.97771389540586 8.15484807496355 7.80398845869184 8.21502426299953 8.6268280880845 7.57809063225545 8.67544573144155 8.33879230161569 7.1690265006931 7.38704349560789 6.78413698112332 6.77687275620216 6.67792158128549 6.83377502537193 6.3946663871858 6.93502166440116 6.60572584620785 6.94966980480062 7.26756048618116 0.253808207655909 0.241765508223908 0.251495470056235 0.247104023204863 0.244463153969999 0.243380241280729 0.245802911476336 0.251639819348397 0.24482977225981 0.248614206039741 0.241763683635242 0.241763683635242 0.256849578099028 0.256660576916888 0.246601735407204 0.242614412435526 0.248874140451103 0.255149785806181 0.246573749363376 2 0|2 /|- 16691115 16692029 16691532.3 16690910 16693787 - gene protein_coding_gene FALSE TRUE AT2G39970.1 peroxisomal membrane protein (PMP36) similar to ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1), binding / folic acid transporter [Arabidopsis thaliana] (TAIR:AT5G66380.1); similar to Os09g0508900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063624.1); similar to putative peroxisomal membrane protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17070.1); similar to Os03g0265300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049647.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.380268439343626 -2.55636478598138 0.0268922655140458 1 1.93115867720054 15.1809750556738 -0.380268439343626 0.205746838461824
AT1G17090_at 1.89002073833988 2.27702715947808 2.24096088359641 2.54191943175398 1.58491273937243 1.68262382150984 2.23764110041752 2.76397913822669 2.17295757683767 2.8938133163396 2.32688742485647 2.17646547537496 1.86954362037159 2.43662093955069 2.19652231433501 2.00345197934202 2.1018576486226 2.49531295178609 2.40266232500158 0.183655436610322 0.189319283818926 0.184328441895029 0.185268424596739 0.182956466256894 0.183344153217176 0.183894206488050 0.194400891113697 0.187779817859074 0.187597703894882 0.189177004081011 0.182956466256894 0.183785033966334 0.192182815518869 0.194236652137897 0.182956466256894 0.202391844521989 0.185891576727146 0.185855693677701 1 1 - 5842461 5842712 5842602.455 5842209 5842875 - gene protein_coding_gene FALSE TRUE AT1G17090.1 unknown protein -0.284270546751866 -2.55621581211057 0.0268993713883139 1 1.93092774218624 4.49770756008996 -0.284270546751866 0.125620188944762
AT4G16590_at 0.170094158442896 0.0974789545064494 0.939714249926257 0.568317009466307 0.412351262287747 0.680928985906988 2.09937670376725 2.68476606923524 0.777779654023959 0.944353210149263 1.54761770033359 1.14773416683061 0.746351237676592 1.73598731330491 2.10770905918708 3.48848519546185 2.24940348088318 2.32671989736743 0.467294896744612 0.290449989817505 0.292649546851726 0.292124360469529 0.290449989817505 0.29398333345564 0.293631170293742 0.294582789645877 0.294557510282129 0.304914736405949 0.299579741099979 0.292479130685129 0.290449989817505 0.290449989817505 0.291148914203305 0.3151817248273 0.31522104074656 0.298063466587252 0.290449989817505 0.297026500258869 4 4 + 9347796 9348988 9348544.091 9345172 9349243 + gene protein_coding_gene FALSE TRUE AT4G16590.1 ATCSLA01 (Cellulose synthase-like A1); glucosyltransferase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA11 (Cellulose synthase-like A11), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16190.1); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to Os06g0625700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058114.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.288170329075122 2.5561478183556 0.0269026152221812 1 1.93082234096439 2.28090855420236 0.288170329075122 0.129273522805615
AT3G07550_at 5.09459162820623 4.46593466474005 4.14593713563551 4.1280944196297 4.80476718597477 4.93253056341582 4.53827891705706 5.03657883163699 4.84665101807887 5.25723891797067 5.05665456735726 4.50077832225151 4.88795181212464 4.76196546582503 4.40917353877768 4.66484856272237 4.70090926095342 4.5469148573248 4.92972226263798 0.214058123440942 0.213435278797454 0.219494112154116 0.216111941886925 0.210143925886943 0.216252824526258 0.213477056882885 0.218628034248172 0.227153144846559 0.219270464982602 0.211361171274281 0.210143925886943 0.225109712468847 0.217970151063943 0.214801532041465 0.210353807819052 0.225190541390456 0.210143925886943 0.216779050571642 3 3 + 2410562 2411012 2410772.273 2409483 2411300 + gene protein_coding_gene FALSE TRUE AT3G07550.1|AT3G07550.2 F-box family protein (FBL12) similar to protein binding [Arabidopsis thaliana] (TAIR:AT5G23340.1); similar to Os11g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067651.1); similar to F-box-like protein [Musa acuminata] (GB:AAR96013.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.300534101029107 -2.55518759342620 0.0269484665546797 1 1.92933388818647 9.49451597561015 -0.300534101029107 0.14060669876946
AT2G04300_at 2.69921500800220 2.84598708579399 2.49850365742148 2.81184948071950 1.90183619088083 1.99641128346939 1.96268130737677 1.84752218732777 2.56559431223788 2.72478387424021 1.76308259679914 2.28684772492722 2.08923889426852 2.34389813581072 1.75153774656822 2.32972176048314 2.66314279518288 2.78521283770061 2.73591695044220 0.196880082604407 0.195826570530742 0.197687087397337 0.203046360168816 0.203875188801673 0.195389724827501 0.195389724827501 0.198513333887191 0.208786006188326 0.205246937671903 0.198394987770052 0.204629050379967 0.204450344220212 0.199648714360203 0.198594635029554 0.195389724827501 0.204694489115382 0.201712948106509 0.198177529318219 2 2 + 1496228 1496884 1496606.455 1493006 1497013 + gene protein_coding_gene FALSE TRUE AT2G04300.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.230273822420792 -2.55408336911404 0.0270012889385709 1 1.92762233601173 4.78400928701115 -0.230273822420792 0.0651967728096718
AT2G44480_at 1.5631543248388 1.61096394336425 1.73613208465071 1.95773843485046 2.48608173150422 2.11715694712017 0.601416654996696 1.21101697831465 0.947080045395619 1.14957751926876 0.901438118938344 0.595888667157405 0.675920215791856 1.2111374056316 0.780161000114158 0.680489419368249 0.957931235176954 1.34579285410233 1.33873968373526 0.204983368583805 0.200417639855073 0.206029789918799 0.202304559675487 0.204066791103034 0.203769787433371 0.203977263594157 0.205667219876847 0.204554185750941 0.199488221842443 0.199488221842443 0.201061949234884 0.204293351519929 0.201472572188680 0.202684000544914 0.210898456452296 0.208936423677351 0.207051805831239 0.203229439036255 2 2|0 +|/ 18368935 18370048 18369600.4 18366810 18370164 + gene protein_coding_gene FALSE TRUE AT2G44480.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE86373.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.288050886277345 2.55388339441248 0.0270108659383058 1 1.92731238762698 2.67982127778916 0.288050886277345 0.129399671813580
AT4G28290_at 7.76325744409026 7.61520270294488 8.3831837687506 8.45901639184476 8.00774239158578 8.02254551564348 8.53446271539947 8.56858362503039 8.11154483061356 8.31369250569674 8.6787789431213 8.2744639665211 8.93702161856717 8.880967197179 7.47007971059098 9.09134445102276 8.91601340182562 8.43215521373148 8.35186163500638 0.150988575198548 0.144169603853051 0.147794569054580 0.142552562786304 0.144254955762869 0.146348758064295 0.148943205829068 0.147677053492132 0.154228244637917 0.145817725975185 0.145367981258008 0.141633388088245 0.144522393994054 0.143977347657444 0.157619510563756 0.142118471206559 0.145990891321206 0.157989151877313 0.144413196062482 4 0|4 /|- 14012044 14012113 14012074.625 14011875 14012589 - gene protein_coding_gene FALSE TRUE AT4G28290.1 unknown protein 0.211907733735472 2.55366949612758 0.0270211134497468 1 1.92698086304416 16.5913173460406 0.211907733735472 0.0294976545525084
AT2G20310_at 4.10330149057621 4.19321584692401 4.22009384445432 4.07548713623578 4.66054438097776 4.87758302891405 4.09531877258467 4.43946414547194 3.56210589602856 3.64080792654561 3.98664180167885 3.70519816315847 3.7757599146435 3.82949594485223 3.98073574812769 4.07409074136082 3.85310282051952 3.53075170317127 3.64529420901245 0.195180407976462 0.187061998216447 0.187157167448089 0.187846221125301 0.198911106949658 0.202222062073101 0.185566888819859 0.191227613883538 0.191348956210312 0.193212138402621 0.186781528228731 0.185566888819859 0.19093961741745 0.193854299212059 0.192592749014251 0.185566888819859 0.189204700018962 0.192673738189636 0.188850863489107 2 2 - 8768601 8768973 8768799.364 8768409 8770233 - gene protein_coding_gene FALSE TRUE AT2G20310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28690.1); similar to Os10g0466000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064801.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK27810.1) 0.238252397291552 2.55319212700125 0.0270439971974905 1 1.9262409972922 8.06214680504297 0.238252397291552 0.0763281924052114
AT4G18590_at 5.45553115294612 5.5918563310093 4.74525211885825 5.26257305831943 5.85362266433624 5.16871338449496 5.41078755665112 5.85617602707726 6.13138772356788 5.48077489415656 5.88656954161011 6.31398651899296 5.54820176687544 5.95237438372755 5.74959402066104 5.71219870375602 4.07032757263412 5.398941416679 6.16255123551568 0.265248385598092 0.268018643977993 0.272626211884835 0.265952142593828 0.264091767887826 0.281107202822332 0.264091767887826 0.270186702469950 0.269668252042362 0.279509445274443 0.272783237902675 0.265210041048899 0.264091767887826 0.274712894045451 0.271065199146322 0.268190724163474 0.274559254718137 0.264091767887826 0.264091767887826 4 4|0 +|/ 10236539 10237087 10236748.778 10236236 10237196 + gene protein_coding_gene FALSE TRUE AT4G18590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52630.2); similar to Os01g0253600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042613.1); similar to ENSANGP00000012334 [Anopheles gambiae str. PEST] (GB:XP_319355.3); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.333463918774202 -2.55265781813486 0.0270696330757297 1 1.92541290915735 11.1700284658935 -0.333463918774202 0.168998943517655
AT3G04860_at 4.11696296238376 4.56849038119093 3.73401183541588 3.8055408926903 4.64071819761758 4.52496722637412 4.64742741622678 4.62028761262725 4.45599678988807 4.32456321261761 4.43760145328398 4.47438834778814 4.18196404937363 4.23824494108946 4.95544972617544 4.25258075508756 4.27705215204967 3.76252904646069 4.70509018665324 0.248354164820039 0.244228818956577 0.247914604410412 0.247184133993518 0.265460517392671 0.255792089231572 0.252599436771549 0.250896321253078 0.249539086021764 0.249931142955057 0.251751328426233 0.245737465726027 0.244228818956577 0.254515426219142 0.256159373365737 0.246630140957836 0.255901415692055 0.249873663887433 0.246062774304148 3 3 - 1339399 1339895 1339602.818 1339114 1340629 - gene protein_coding_gene FALSE TRUE AT3G04860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28150.1); similar to Os07g0572300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060057.1); similar to Os03g0806700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051637.1); similar to Protein of unknown function DUF868, plant [Medicago truncatula] (GB:ABE92686.1); contains InterPro domain Protein of unknown function DUF868, plant; (InterPro:IPR008586) -0.242361487944388 -2.55152109219785 0.0271242521336477 1 1.92365127351341 8.74114733488243 -0.242361487944388 0.0817448891576348
AT2G31440_at 7.32852066069458 7.82884634437023 7.3644219963617 7.29558931909674 8.10894325367037 7.6192753973354 7.31187479338775 7.74724099356442 7.79615303499282 7.05958455876296 6.47764327861455 6.8387862723423 6.99702884422925 7.08146094180587 6.53917234396503 7.01346798422891 6.18705857315961 6.67007321599901 7.26763206049872 0.184315055247773 0.174917581980325 0.184740087805035 0.175508876203518 0.179116393847001 0.186209330456943 0.177876516677415 0.177287171471588 0.176685849738652 0.172708003799905 0.180356858303533 0.182939288975889 0.183089143480501 0.180897371360911 0.194779419793308 0.176089191098867 0.213469102544358 0.174870687724387 0.172708003799905 2 2|0 -|/ 13406448 13407654 13407057.2 13406386 13408048 - gene protein_coding_gene FALSE TRUE AT2G31440.1 protein binding Identical to Gamma-secretase subunit APH1-like [Arabidopsis Thaliana] (GB:Q8L9G7;GB:Q8VZI0;GB:Q9SIC5); similar to PREDICTED: similar to CG2855-PA [Tribolium castaneum] (GB:XP_966461.1); similar to Os02g0272600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046527.1); contains InterPro domain Aph-1; (InterPro:IPR009294) -0.302966663006645 -2.55139059385342 0.0271305294358912 1 1.92344904276274 14.6256105864158 -0.302966663006645 0.143163602394077
AT2G38500_at 3.99424566088651 3.38671843368487 3.31354169161787 3.24724882796075 2.72599230090713 2.86679210357227 2.86597362177894 3.07413379092521 3.58511599534831 3.7876238161873 3.66018999121508 3.12008101454111 3.29809292700154 3.51152639943903 3.00455297327199 3.46538405395359 3.76490204502394 3.29698531590365 3.55454641809914 0.187897694947770 0.195331801248667 0.192707310633041 0.195909787932747 0.188921096286500 0.192420921605153 0.198941714935965 0.190710294404056 0.209236416663166 0.195711895291095 0.194546494782829 0.197431459338877 0.195397632138101 0.187897694947770 0.192289295293281 0.195291872887656 0.193800104507421 0.201755827090013 0.193272896277629 2 2|0 -|/ 16125028 16125846 16125486.8 16124473 16126186 - gene protein_coding_gene FALSE TRUE AT2G38500.1 similar to DTA4 (DOWNSTREAM TARGET OF AGL15-4) [Arabidopsis thaliana] (TAIR:AT1G79760.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87077.1); contains domain no description (G3D.3.50.60.10); contains domain Clavaminate synthase-like (SSF51197) -0.272044274486109 -2.55093828452367 0.0271522977195109 1 1.92274812125442 6.70065234554435 -0.272044274486109 0.114352253363628
AT4G11020_at 1.4552049021518 1.35588076513319 1.37255649055527 1.54994379959426 1.07197113355679 1.22806072601384 1.30524835125351 1.69437200487584 1.80526856800726 1.67672235866702 1.51707948328842 1.14058004873763 1.5592927649595 1.26337079046275 1.34379278772128 1.37046571898839 1.39453739333208 1.76720419136519 1.78314153343584 0.164896118145709 0.164970746899653 0.162432112561400 0.176421332393330 0.161967145988684 0.162443610337530 0.16132999732507 0.162873454023127 0.160599669275132 0.173878298208544 0.166282733947174 0.16373738720539 0.163170737357296 0.168417174548038 0.160564587552532 0.160564587552532 0.16592668330419 0.166023251034343 0.160615026543496 4 4 - 6734779 6735912 6735534.545 6734685 6736071 - gene protein_coding_gene FALSE TRUE AT4G11020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23870.1) -0.241273612218341 -2.54944196350494 0.0272244335501731 1 1.92042949559062 2.96644704700528 -0.241273612218341 0.0806354367158141
AT2G21320_at 7.8229301601889 7.91532458014319 8.93299886807092 8.93255981206319 9.03584091208135 8.87096882011152 9.4888416222006 9.68975057950524 7.96505608610364 8.75526600825047 8.34442804966074 8.68039926452872 8.8823614625168 8.5823888685755 8.02056839753977 9.04091335436698 8.78115451054624 8.59460330568154 8.45281537086326 0.138558947419699 0.133961873098130 0.138871033434374 0.136526211478724 0.142309121245845 0.142421313036864 0.151777171295966 0.146804919808236 0.147360556960439 0.140805347000210 0.143932264004312 0.136094591364338 0.135393355995268 0.146746209682755 0.143735781718452 0.142817301187441 0.154945529062351 0.13938600823903 0.143818974066432 2 0|2 /|+ 9134087 9134583 9134374.667 9133344 9134924 + gene protein_coding_gene FALSE TRUE AT2G21320.1 zinc finger (B-box type) family protein similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT4G38960.1); similar to Os04g0493000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053181.1); similar to Os09g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063733.1); similar to H0522A01.9 [Oryza sativa (indica cultivar-group)] (GB:CAH67738.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.219343348755086 2.54917489655514 0.0272373283212731 1 1.92001568592165 17.3396009060037 0.219343348755086 0.0477342791696536
AT1G02360_at 5.35728830205646 5.52739848452782 4.06237120234359 4.08257972299723 3.83095314764783 4.27686432659067 2.5134990338743 2.43339001483674 5.79943309074497 3.59016103792874 4.18115100763174 5.29726417494681 3.12602163483418 4.38504053054867 4.34759916629299 2.62634424059942 3.40713672683361 4.06541578095894 4.17767233062481 0.195982161173047 0.202335710509956 0.200373985882543 0.199455737301625 0.197263960884088 0.212497462580364 0.207531290643350 0.203081445295790 0.199858082183896 0.195706945664359 0.194850770045573 0.203043695385919 0.199892223096559 0.207240566846918 0.198431962244883 0.204848127084720 0.206918683528582 0.199037917037057 0.201120858562208 1 1 - 472161 472843 472532 471990 473160 - gene protein_coding_gene FALSE TRUE AT1G02360.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT4G01700.1); similar to chitinase precursor [Petroselinum crispum] (GB:AAD54935.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.243813677098856 -2.54903110796031 0.0272442733397439 1 1.91979289422320 8.23650243482448 -0.243813677098856 0.0838199500888913
AT2G32280_at 1.86800234166090 1.96358843421280 2.22142854985724 2.27926558969979 1.82676162721067 2.16727516970322 1.79722390450058 1.43849064914497 1.63059615899516 1.71734180701854 1.49697558900958 2.12751299716422 1.85900286232217 1.44632326788806 2.15873572490668 1.30179692361369 1.74135505621118 2.03898468792634 1.55438484245075 0.208132811687729 0.200407750931000 0.200407750931000 0.203980212930605 0.200624907686980 0.200407750931000 0.203919355031366 0.202753460566469 0.201915783650190 0.210655383751519 0.200897437673085 0.203156606597798 0.208145278620518 0.202634847127716 0.201665167433683 0.200407750931000 0.207242012436163 0.208942628056651 0.203627032115925 2 2|0 +|/ 13720342 13721006 13720701.7 13720113 13721288 + gene protein_coding_gene FALSE TRUE AT2G32280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21310.1); similar to Os07g0545100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059913.1); similar to Os05g0435100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055641.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47054.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.247042343773335 2.54848510321431 0.027270661336633 1 1.91894691240583 3.64797627897463 0.247042343773335 0.0877509752132783
AT1G50440_at 8.21410450656732 8.15982165823276 8.02718996209433 7.78467363923527 8.45397992163246 7.9580788989928 7.65775069014687 7.75115686239432 7.4978311998674 7.25119430640461 7.8494631879033 7.91506127416387 7.94287378808678 8.04846456518888 7.73239181928915 7.97296053263511 7.67811346277434 7.71379782343763 7.61890963960404 0.156940833666729 0.156144537096990 0.156052181814410 0.154963140024965 0.154101576794015 0.172473573157119 0.152855112040284 0.168196683928025 0.172901165046025 0.163284072339512 0.154095210810769 0.151807861059175 0.157182466477661 0.159441459954613 0.160285661967626 0.152809946449214 0.160424062774312 0.161271214162565 0.157810978708957 1 1|0 +|/ 18689922 18691240 18690466.556 18689445 18691575 + gene protein_coding_gene FALSE TRUE AT1G50440.1|AT1G50440.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G11020.1); similar to hypothetical protein [Pongo pygmaeus] (GB:CAH89894.1); similar to hypothetical protein 185.t00015 [Entamoeba histolytica HM-1:IMSS] (GB:XP_651061.1); similar to Os02g0132300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045797.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.255467300439796 2.54838393321342 0.0272755535640422 1 1.91879016259725 15.6571541117338 0.255467300439796 0.0973427994880268
AT4G33460_at 7.07878448634385 7.39017697852443 6.85176558359727 6.92589748308817 7.8181399780646 7.12739332482749 7.40737773161474 6.88029210476298 6.08189447908686 6.0950375060237 6.3020934034986 6.5665598524519 7.0403459522934 6.78606665832138 6.7366597947634 6.8941604625014 6.78471573580462 6.47700700922819 5.9593325463964 0.215100651652309 0.212199825315124 0.204990855498189 0.204850797674788 0.206030341181972 0.208230754126393 0.199773908858261 0.204084179081164 0.213592688734464 0.207576951426626 0.206740286113903 0.199773908858261 0.199773908858261 0.205715608042591 0.201339646065113 0.205227532540581 0.207849430777395 0.205497347198367 0.202726287655458 4 4 - 16098370 16099872 16099206 16098073 16100269 - gene protein_coding_gene FALSE TRUE AT4G33460.1 ATNAP13 (EMBRYO DEFECTIVE 2751) member of NAP subfamily Identical to Non-intrinsic ABC protein 13, chloroplast precursor (NAP13) [Arabidopsis Thaliana] (GB:Q8H1R4;GB:Q9SZC3); similar to MDR3 (P-GLYCOPROTEIN 3) [Arabidopsis thaliana] (TAIR:AT4G01820.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL56381.1); similar to Os01g0770500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044378.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.322335432594212 2.54785237330319 0.0273012721172503 1 1.91796659673358 13.5569147684080 0.322335432594212 0.160242546681815
AT3G27380_at 9.06723368039648 9.34136095207898 9.41467858234658 9.46800216427941 9.04208219851773 9.05881721067493 9.24074326986368 9.17936866609272 8.18572989473952 8.22320662511193 8.75429159176128 8.81450867228379 8.18185156634611 8.3935700166322 8.0660792291557 8.2950905747628 8.68804131630076 8.86260206305 7.90736744616872 0.182277433929103 0.177754789772630 0.182560818759509 0.191736544057774 0.182668885606502 0.179878747240647 0.183288839815083 0.181646423033219 0.190081479530559 0.189021645546788 0.192819593687297 0.182617401542940 0.193399288420111 0.181453812215644 0.190399263397253 0.187294300819243 0.198436625482589 0.183289300572433 0.186641565736468 3 3 - 10132449 10133615 10133176.364 10132197 10133997 - gene protein_coding_gene FALSE TRUE AT3G27380.1 SDH2-1 (succinate dehydrogenase 2-1) One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth. Identical to Succinate dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial precursor (EC 1.3.5.1) (IP) (SDH2-1) [Arabidopsis Thaliana] (GB:Q8LBZ7;GB:Q9G3M0;GB:Q9LTZ2); similar to SDH2-2 (succinate dehydrogenase 2-2) [Arabidopsis thaliana] (TAIR:AT5G40650.1); similar to Os08g0120000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060876.1); similar to succinate dehydrogenase [Triticum aestivum] (GB:CAD62367.1); contains InterPro domain Alpha-helical ferredoxin; (InterPro:IPR009051); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Fumarate reductase, C-terminal; (InterPro:IPR012285); contains InterPro domain Succinate dehydrogenase/fumarate reductase iron-sulfur protein; (InterPro:IPR004489); contains InterPro domain Ferredoxin; (InterPro:IPR001041) 0.220144060146612 2.54723350640387 0.0273312448860042 1 1.91700779961615 17.5327553575946 0.220144060146612 0.0495662115843618
AT2G43810_at 5.60561839729037 5.95982350364011 5.42443010431423 5.83132068640016 6.1477818024872 5.90162730574531 5.4977248806717 5.88430782878525 5.11063999747817 4.79515971927612 5.4521226280668 5.52642287011325 5.97308602071365 5.41214698669849 5.64696257754449 5.95858605070494 5.52425635278779 4.79822644936124 5.29221825650683 0.211731283116023 0.210281735114256 0.208170841488553 0.209840433527631 0.209027673097377 0.217175355654824 0.210370901144597 0.221497235989712 0.218459111213296 0.21951913227493 0.213057495101285 0.206745087038283 0.217093024800934 0.216789366689266 0.206226855858100 0.203768322683054 0.216204782169166 0.205049526223309 0.218273367823998 2 2|0 +|/ 18156829 18157932 18157370.556 18156388 18158372 + gene protein_coding_gene FALSE TRUE AT2G43810.1|AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative [Arabidopsis thaliana] (TAIR:AT3G59810.1); similar to Os02g0510100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046930.1); similar to putative Sm protein F [Oryza sativa (japonica cultivar-group)] (GB:BAD23667.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.279945786525828 2.54682282296689 0.0273511528257084 1 1.91637155850584 11.0828204302097 0.279945786525828 0.122497720798505
AT4G35130_at 2.29915596455271 2.49127689323249 1.99593982974332 2.28026245204516 1.93169988343912 2.08449787972076 2.02414340146093 2.46797304080567 2.24179030905569 2.19426038926589 1.53494443543036 1.66787223464419 2.28137757772317 1.73286973173513 2.13157556843214 2.16864348356248 1.80007894240496 2.54683613112768 2.32021493550996 0.176834782535241 0.177083681172427 0.179307092270378 0.178425018573325 0.177977025267642 0.178296756453779 0.179503994990710 0.174117846997387 0.171843779251273 0.185521776973227 0.180340985570995 0.180423866865490 0.178220092809684 0.17642268880509 0.175144851236788 0.171843779251273 0.173563064548748 0.176900493905 0.176627802601580 4 4 - 16721100 16721490 16721308.727 16721089 16723503 - gene protein_coding_gene FALSE TRUE AT4G35130.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93859.1); similar to unknown [Sorghum bicolor] (GB:ABE77204.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.25830054762693 -2.54658503600145 0.0273626860969729 1 1.91600318094208 4.31442532199653 -0.25830054762693 0.100622288835195
AT4G24140_at 1.39737935590293 1.53542268284059 0.72560352896295 0.746059768467488 0.908986946211356 0.473511801513796 1.05004924702687 0.701775630891985 1.30578475208750 1.15181136505788 1.36993760878487 1.28832185342793 0.924491994202018 1.08658997180342 1.53373556320071 0.948319779167777 1.05047148109144 0.971369854829462 1.15293927553268 0.180747572415130 0.187539663157944 0.181215441060406 0.177543680418839 0.174733415796748 0.178539377568231 0.177613721087979 0.187237426499288 0.178838110532877 0.178019583339424 0.184052801365241 0.187563884111572 0.199235095750988 0.182336082145686 0.179529909681210 0.186816275782216 0.181558570360035 0.179751308302720 0.181508495956663 4 4 - 12530144 12532280 12531229.636 12529885 12533852 - gene protein_coding_gene FALSE TRUE AT4G24140.1 hydrolase, alpha/beta fold family protein similar to BDG1 (BODYGUARD1), hydrolase [Arabidopsis thaliana] (TAIR:AT1G64670.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO33147.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.257236626061300 -2.54657375208828 0.0273632335141550 1 1.91598570014448 2.11743190066365 -0.257236626061300 0.0994737010981722
AT1G69280_at 2.71703903709555 2.86741778570781 2.57526712548964 2.88193686031683 2.49204307611679 2.39859458132484 2.54212062110329 2.65188229519002 3.31596436860393 3.07367582258640 2.72758052430371 2.65965228222085 2.78475709973868 2.90608329467306 2.28112613662167 3.00519747478537 2.61659876915402 2.71801149512791 2.79772750025771 0.216978590773286 0.221959495240789 0.222440267562023 0.217687636286418 0.227934315756932 0.216978590773286 0.218285311449827 0.221737943559044 0.216978590773286 0.218824374018502 0.216978590773286 0.217520001328440 0.227737619668813 0.217355605816339 0.226738812726816 0.226714826610188 0.229439465745018 0.227384885361716 0.220522821978526 1 1 - 26049151 26049839 26049548.5 26048823 26051853 - gene protein_coding_gene FALSE TRUE AT1G69280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G03630.1) -0.228867268266667 -2.54624215402984 0.0273793251573330 1 1.91547200139887 5.52820356365685 -0.228867268266667 0.0641564639458856
AT4G09620_at 7.77888868746266 7.97109496197375 7.76082547675977 7.74889635449201 8.02528321207445 7.36599723187114 8.73867144785443 8.69523878521659 7.45922120989491 8.35637334774826 7.99672949691866 8.14527159971914 8.12113610827571 8.1749918963621 7.90521460304094 8.5409331294652 7.79072615003904 7.40293981280097 8.15909973414774 0.191163792198720 0.186486644235413 0.198475558521330 0.192599258058289 0.195059484256904 0.202612300720559 0.205143137348323 0.195277968134179 0.224651332514712 0.191337073896955 0.190574117262489 0.191335656314257 0.191961620293659 0.199079000028182 0.198789035362883 0.186129253229070 0.200241262271752 0.199922388328462 0.189526485367672 4 4|0 -|/ 6077123 6077780 6077419.4 6076989 6079099 - gene protein_coding_gene FALSE TRUE AT4G09620.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57113.1); similar to Os03g0838900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051838.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.276272408090049 -2.54541441812023 0.0274195337456313 1 1.91418975509603 16.0112658264671 -0.276272408090049 0.11909756692315
AT2G31850_at 2.82437197036145 2.51371687424712 3.20226751755372 3.27203536470461 2.51162063585505 2.81028704161475 2.57665658188399 2.22087380609687 3.07878120473161 2.73444257877975 3.24418490945669 2.67300553233 3.00438535032308 2.47834340253686 2.88297017483556 2.5618164284877 3.0428041989822 3.19668119643845 2.55717904169119 0.242434903767715 0.241555979324367 0.257083287712593 0.251714938496899 0.263073136927097 0.247266785983813 0.24638007763725 0.243770091535662 0.256783832336523 0.245190257879693 0.248971306795857 0.248755822301405 0.247649722308461 0.25018791563267 0.24674955687827 0.241555979324367 0.241555979324367 0.243983113108138 0.244162864655136 2 2 + 13547276 13547471 13547384.455 13547276 13547617 + gene protein_coding_gene FALSE TRUE AT2G31850.1 unknown protein 0.255268727945489 2.54535233355098 0.0274225519404856 1 1.91409358271471 5.57930781116036 0.255268727945489 0.097458687658058
AT1G22380_at 2.07991611280165 2.15776734475539 1.97789409019885 1.91673448761616 1.77647400016595 1.55048718042507 2.50781500206182 2.04249287429222 1.92836311236217 1.98170565348298 1.90801370721889 1.56576527506578 2.35598149588252 1.28522376302575 1.39637971381551 1.60082625679835 2.16912496585055 2.30761510202591 1.88355611145548 0.218901533311054 0.221148096677029 0.227902426817550 0.231975274887933 0.215208140710494 0.216888871134872 0.218235561464455 0.226226380632861 0.221226182677042 0.223517694562681 0.219778417191665 0.215092397233034 0.213910428154230 0.219268202379438 0.229273877776145 0.213910428154230 0.228953556474626 0.219960127544616 0.221155618315311 1 1 - 7900834 7901359 7901142.636 7900376 7902321 - gene protein_coding_gene FALSE TRUE AT1G22380.1 transcription factor/ transferase, transferring glycosyl groups similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); similar to glycosyltransferase NTGT5a [Nicotiana tabacum] (GB:BAD93689.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.249596200674699 -2.54478348579538 0.0274502212507015 1 1.91321242521301 3.87860992523661 -0.249596200674699 0.0911451226756694
AT2G26300_at 6.87750392520826 7.23929712449796 7.53047045332998 7.48457207567571 7.95320045695617 7.51759885189542 6.93847294458529 6.1459559115018 6.25577634348477 6.48398755807302 6.47430264737788 6.41190506960872 6.44324132398463 6.14665011170548 5.69116022889922 6.57055129762663 6.54754273931847 6.33694363857725 6.71439695964799 0.202691162606764 0.198705509616341 0.203747100458995 0.204075086497305 0.204223147714389 0.204620562348780 0.198793647611661 0.206147361064093 0.209093294903269 0.202329006936725 0.201411431298143 0.200143776041444 0.202622669146025 0.206149926616740 0.198010426270054 0.197116988997422 0.210768786637688 0.208725092070859 0.199063816182262 2 2|0 +|/ 11206606 11207871 11207388 11204074 11208180 + gene protein_coding_gene FALSE TRUE AT2G26300.1 GPA1 (G PROTEIN ALPHA SUBUNIT 1); signal transducer Encodes an alpha subunit of a heterotrimeric GTP-binding protein. Positive regulator in abscisic acid (ABA) inhibition of stomatal opening. Recessive alleles have complex phenotypes including: reduced brassinolide response, reduced cell divisions, round leaves, short hypocotyls. Identical to Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (GPA1) [Arabidopsis Thaliana] (GB:P18064); similar to XLG3 (extra-large GTP-binding protein 3), signal transducer [Arabidopsis thaliana] (TAIR:AT1G31930.2); similar to Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (GB:P93564); similar to G protein alpha subunit [Phaseolus lunatus] (GB:BAF30964.1); similar to Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (GB:P49082); contains InterPro domain Plant G-protein, alpha subunit; (InterPro:IPR002976); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) 0.332109914042342 2.54462846830348 0.0274577662079606 1 1.91297230560103 13.6171376775593 0.332109914042342 0.168746754143932
AT1G15860_at 7.4541658672506 7.04515383317769 8.19691481719877 7.96901512653424 8.03896065502951 7.32140192264268 7.79992376197672 8.0316628360455 6.80919997724511 6.81612226982356 7.38323426196775 7.04866960177817 7.42421457164901 7.47475117127417 6.86508471419863 7.44614605445977 7.32885624230365 6.84603413333379 7.06801266149941 0.192754242364431 0.186605439171416 0.183764021203671 0.188465714672837 0.189416891120953 0.194742956413923 0.190633067765428 0.199174514463493 0.192934455978301 0.182628090208635 0.189747409987557 0.186482481457040 0.191519148508972 0.181136374364592 0.196898022971325 0.185369545154225 0.186947510557364 0.192810824103413 0.191941340439801 1 1|0 +|/ 5455479 5456673 5456199.333 5455050 5456926 + gene protein_coding_gene FALSE TRUE AT1G15860.1 calcium ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12760.1); similar to hypothetical protein DDBDRAFT_0185973 [Dictyostelium discoideum AX4] (GB:XP_638588.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein of unknown function DUF298; (InterPro:IPR005176) 0.314096048376633 2.54436560070661 0.0274705650653559 1 1.91256513362879 14.7946009258453 0.314096048376633 0.153602236140674
AT2G44180_at 8.78971099194108 9.04100931608914 9.11476903518467 8.80495158907291 8.79345696568922 8.51779276430812 7.19570907182056 7.05420441365226 8.19025062013245 7.16994571200234 7.48236146580488 7.66709896416652 6.93722551144625 7.37550045431358 7.07853663976512 7.20837133870788 7.1341313785712 7.5528257885882 7.43842124565758 0.157532523364867 0.173858813422193 0.167916100579889 0.164418606419071 0.160951334587649 0.161585724072122 0.165055292211259 0.153920443146238 0.156352161445567 0.161381372298962 0.159398413881578 0.153299355482250 0.170875379725989 0.161231628168119 0.165939084898014 0.153470070969774 0.176160363017936 0.158138280754806 0.161141252539458 2 2|0 -|/ 18276556 18277562 18276935.8 18276337 18278936 - gene protein_coding_gene FALSE TRUE AT2G44180.1 MAP2A (METHIONINE AMINOPEPTIDASE 2A); methionyl aminopeptidase Encodes a MAP2 like methionine aminopeptidase. In MAP1A mutant background plants show an increased sensitivity to fumagillin resulting in defects in development. Phenotype is similar to RNAi lines which knock out all MAP2/MAP1 loci. Identical to Methionine aminopeptidase 2A (EC 3.4.11.18) (MetAP 2A) (MAP 2A) (Peptidase M 2A) (MAP2A) [Arabidopsis Thaliana] (GB:Q9FV49;GB:O80587); similar to MAP2B (METHIONINE AMINOPEPTIDASE 2B), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G59990.3); similar to putative methionyl aminopeptidase (EC 3.4.11.18) F6E13.31 [Oryza sativa (japonica cultivar-group)] (GB:BAD03108.1); similar to Methionine aminopeptidase 2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22101.1); similar to methionine aminopeptidase 2 [Ananas comosus] (GB:ABB91775.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 2; (InterPro:IPR002468); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) 0.246275695130485 2.5435115570675 0.0275121883834017 1 1.91124230208395 15.8659733361037 0.246275695130485 0.0874143659111101
AT1G26550_at 10.825766980548 10.8008371010618 11.1539408749963 11.2145949867982 11.0101948121980 10.7844750635208 10.9250865212521 10.7036627605736 10.4216265049622 10.3781894802954 10.5724517965483 10.5038395294123 10.551498132926 10.5431342605877 10.2468326419822 10.6420398536885 10.9016388588266 10.5502285199866 10.2326524680125 0.0740696986995371 0.073471360166268 0.0763696736869684 0.0723817147959869 0.0754500824065886 0.0756004166430945 0.0743627887182667 0.0741394707010333 0.0791850526790645 0.0740751648254742 0.076205915176523 0.0728151223839456 0.0756949161653088 0.0832398138214313 0.0781680011337939 0.0741466755013425 0.0738313270394971 0.0742662247006546 0.0723817147959869 1 1|0 +|/ 9171789 9172517 9172189.222 9171117 9172927 + gene protein_coding_gene FALSE TRUE AT1G26550.1 peptidyl-prolyl cis-trans isomerase PPIC-type family protein similar to PIN1AT (parvulin 1At) [Arabidopsis thaliana] (TAIR:AT2G18040.1); similar to Os09g0411700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063153.1); similar to putative peptidyl-prolyl cis-trans isomerase [Gossypium hirsutum] (GB:AAY41234.1); contains InterPro domain PpiC-type peptidyl-prolyl cis-trans isomerase; (InterPro:IPR000297) 0.223382445837112 2.54335036449927 0.0275200513348039 1 1.91099263883160 21.3813769377860 0.223382445837112 0.0558830747664291
AT3G48350_at 2.05205413594396 2.20949791614986 2.00381504338055 2.12900252678733 2.25159461596065 2.04075852273287 3.35336139201238 2.90449146039786 1.94138705244261 2.47236607368315 3.22248061606657 3.27566819245334 3.34696804134547 3.69161998493817 2.69092111815949 2.08957515843113 4.03215312515866 3.59079661606008 2.23879673946194 0.204610678347389 0.195235976481247 0.205688134383068 0.203544400563119 0.199339105804403 0.199185263031257 0.197907190198723 0.202547289481700 0.199319989018222 0.203981610039294 0.210293051583722 0.198038877091040 0.200833669619255 0.197305483482374 0.199709313443856 0.195235976481247 0.208550195715579 0.197900509150929 0.202659874109737 3 3|0 +|/ 17917457 17918264 17917757.9 17916710 17918546 + gene protein_coding_gene FALSE TRUE AT3G48350.1 cysteine proteinase, putative similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT5G50260.1); similar to Vignain precursor (Cysteine endopeptidase) (GB:O65039); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.250723842901691 2.54321624956705 0.0275265951254545 1 1.91078491687109 5.09809169089027 0.250723842901691 0.092611982073955
AT3G01380_at 1.8131800369949 2.02961776196193 1.52226464060242 1.45577083135651 1.35431814121244 1.27756823000183 1.69368524159025 1.79527219145896 2.13180779970820 1.89127570948166 1.91017226384236 1.71330308540627 1.97535931384952 2.06167872254101 2.06408965196704 1.84093481408911 1.99439982800828 1.81601517375475 1.75606637421809 0.212135428153396 0.219302389408483 0.227544964721578 0.214048275787795 0.214838217307211 0.222247692881593 0.222068815340747 0.223380386432138 0.216655184124506 0.219139019803435 0.212225066923924 0.219222218480431 0.213917972840082 0.2186121106416 0.215066189719037 0.219161802767082 0.223450502413429 0.221358770861282 0.212135428153396 3 3|0 -|/ 144324 145248 144718.556 144295 149835 - gene protein_coding_gene FALSE TRUE AT3G01380.1 phosphatidylinositolglycan class N (PIG-N) family protein similar to putative phosphatidylinositolglycan class N short form [Oryza sativa (japonica cultivar-group)] (GB:BAD27634.1); contains InterPro domain Phosphatidylinositolglycan class N (PIG-N); (InterPro:IPR007070) -0.217423767497619 -2.54319252314481 0.027527752953891 1 1.91074816874331 3.54189833497321 -0.217423767497619 0.0449533173999801
AT2G47840_at 6.07947059911895 6.38113221752557 5.34793019196296 5.27120794626674 6.11586650018004 6.11595262158426 6.62747324525278 7.0568656406098 6.62182516203605 6.13133432695643 6.70139931860081 6.84940518699431 6.43484124302821 7.00758918151312 7.15719419361657 6.51345320680285 6.103071536246 6.1363150210964 6.11488499617996 0.181539404337301 0.170146244154804 0.17019465789461 0.180004662265945 0.169249022305126 0.176292750281566 0.171265849077418 0.169249022305126 0.173520805762802 0.174386001891709 0.169249022305126 0.172347874256651 0.169249022305126 0.173353642568318 0.169249022305126 0.172232621978203 0.179370244760403 0.179067592272984 0.169249022305126 2 2 - 19601402 19601794 19601575.182 19601257 19602071 - gene protein_coding_gene FALSE TRUE AT2G47840.1 tic20 protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55710.1); similar to Os02g0726600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047992.1); similar to Profilin (ISS) [Ostreococcus tauri] (GB:CAL54954.1) -0.249967830682567 -2.54295068825315 0.0275395570124246 1 1.91037361164955 12.5756157566684 -0.249967830682567 0.0917783579520319
AT2G31070_at 6.71457884544173 7.66193764011068 6.92478064747071 6.96028465242467 8.00275257937451 7.1067639499692 8.86168886943758 8.91171883724252 7.61037661590873 7.76366789311584 8.14663563674288 7.86136388214166 8.39216180779771 7.88338596834219 6.72674046922066 7.80153845244683 6.66901569646021 6.80977009479208 7.29603759143927 0.244733556557005 0.239725057530940 0.243092205978058 0.241448009573929 0.251117085044420 0.241357483976589 0.24868070414786 0.24370357629575 0.236374975918317 0.243371232487715 0.238111209837642 0.241422113880443 0.241581585669363 0.256324495277382 0.255800863292153 0.241418214457631 0.256871331259721 0.245050663143439 0.241384179200358 2 2 - 13228087 13228595 13228339.273 13227555 13229686 - gene protein_coding_gene FALSE TRUE AT2G31070.1 TCP10 (TCP domain protein 10); transcription factor similar to TCP4 (TCP family transcription factor 4, maternal effect embryo arrest 35), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP transcription factor [Medicago truncatula] (GB:ABE91915.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.404601561621636 -2.54239378993042 0.0275667583578424 1 1.90951110342399 15.1895735199244 -0.404601561621636 0.225904145082444
AT1G50180_at 3.72525908004051 3.47624213491731 3.68461027602309 3.33763177971314 2.93495783443314 3.29853621752258 3.42844132738592 3.80204131825592 3.86930129722356 3.45288023830851 2.99573163046282 3.14247104120500 3.60675465915631 3.85822633138227 3.32226683955325 3.49202773707057 3.52146263757643 3.31992514845129 3.65810165812834 0.210989081233012 0.216891587309132 0.210681881726867 0.215954096782574 0.206776708061361 0.211337189789615 0.210082690015638 0.212342769006918 0.215159885290003 0.206776708061361 0.212203000931478 0.206776708061361 0.206776708061361 0.213458274454545 0.209990806878196 0.217436119453902 0.206776708061361 0.209056438504401 0.207363490592785 1 1 + 18590235 18590715 18590501.273 18587903 18590804 + gene protein_coding_gene FALSE TRUE AT1G50180.1 disease resistance protein (CC-NBS-LRR class), putative similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G48620.1); similar to Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767) -0.273399041503243 -2.54216314387534 0.0275780318461452 1 1.90915389492040 6.99469132153347 -0.273399041503243 0.11662519718423
AT3G57000_at 6.45966866826083 6.50071304033425 5.71415269244148 6.37540102421469 6.3018314125181 6.11431318027855 6.50102344439062 6.8475193708288 4.85134240541693 5.07212580548132 4.65705493090195 5.21777915411198 4.66049657224656 4.49940753248047 5.44656067903936 5.34846531413432 4.70848360548527 5.18128681383461 5.36511434738905 0.237096581668673 0.236094034425868 0.238824018631603 0.240318668051378 0.242401924104699 0.2513220448859 0.243413113939252 0.239624150762386 0.238561385801109 0.241528597854092 0.236094034425868 0.238116388446585 0.236094034425868 0.241762695968997 0.236094034425868 0.236094034425868 0.240487932091854 0.236094034425868 0.240889740534382 3 3|0 +|/ 21103996 21105026 21104422.857 21103247 21105272 + gene protein_coding_gene FALSE TRUE AT3G57000.1 nucleolar essential protein-related similar to Os02g0290400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046590.1); similar to Protein required for 18S rRNA maturation and 40S ribosome biogenesis (ISS) [Ostreococcus tauri] (GB:CAL58628.1); contains InterPro domain Suppressor Mra1; (InterPro:IPR005304) -0.291029457203435 -2.54203409273727 0.0275843415670142 1 1.90895403196532 11.3823958598460 -0.291029457203435 0.133393214537853
AT1G02150_at 9.80869930236125 9.8825291797232 9.47926533955973 9.40863395466393 9.88373630129811 9.52943637217718 10.1628800927614 9.80303508044485 9.81595331571235 9.83410629882993 9.5136758659327 9.93308434308193 9.52947268316825 9.44534658474371 9.93525967445504 9.66090944012986 9.58156193042812 9.560607914233 9.75322055424254 0.107531922062209 0.106188816650604 0.106906049670044 0.106069912150381 0.106553783681493 0.106487699993714 0.107264564643375 0.112127710634975 0.111386543534145 0.111249730095124 0.113451919146785 0.105146109191376 0.109348195060419 0.111813188659994 0.109081045004566 0.110804567317199 0.108407374179176 0.114479740797046 0.109367018389103 1 1 + 409836 410397 410061.182 408622 410611 + gene protein_coding_gene FALSE TRUE AT1G02150.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02820.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); similar to Os12g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066910.1); similar to Os04g0544400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053460.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.247560753485652 -2.54145330363713 0.0276127557522488 1 1.90805457897731 19.4678185499320 -0.247560753485652 0.0891620413596808
AT1G05030_at 6.32811093808743 6.46820581739022 5.85361129389194 5.71667282612204 6.02020961003233 6.01437543048192 6.44311915639148 6.23416936001478 6.07738448146003 6.21056857332068 6.28445885939727 6.92604442746313 6.16692035513004 6.29998925476974 5.93297956168106 6.69349210345086 6.3083025875039 5.47766166127956 6.41175887815224 0.249740048109218 0.234449702685989 0.235452319316106 0.237244483987285 0.241059935378451 0.240745903327478 0.239335472506591 0.247239105200579 0.253115228861405 0.237949253784091 0.239464254760345 0.236993216746882 0.242366450452022 0.243159951726704 0.232382690063252 0.236951244687514 0.243770694609342 0.247366496614452 0.237617073827812 1 1|0 -|/ 1438386 1439254 1438693.111 1438151 1441416 - gene protein_coding_gene FALSE TRUE AT1G05030.1 hexose transporter, putative Identical to Probable plastidic glucose transporter 1 [Arabidopsis Thaliana] (GB:Q0WVE9;GB:Q5XF02;GB:Q9ZVN7); similar to GLT1/PGLCT (GLUCOSE TRANSPORTER 1), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G16150.3); similar to putative hexose transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD26445.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.219595118741062 -2.54081310773725 0.0276441096352737 1 1.90706316532514 12.3820435102076 -0.219595118741062 0.0495772992700324
AT1G07860_at 0.817494066039098 1.45494846812755 0.862664022233424 1.22485884794953 1.32593675530394 1.09666464021009 1.07325257897445 1.08470247196342 1.50975945320278 1.76729694428411 0.968572295678382 1.07398831381975 1.06025499987323 1.14723241755091 0.999287189307463 1.17362054926628 1.01080387637860 1.02176255639621 1.69555951922408 0.207005170552079 0.207824607675381 0.207723670089706 0.209754136752653 0.207115217751733 0.214252458064306 0.213416356856795 0.206201635018691 0.211848774228299 0.205817817868268 0.218735412894332 0.208644933816726 0.212292903124088 0.207162360580978 0.217200159763030 0.215777282379244 0.205817817868268 0.209265392405264 0.207176040603417 1 1|0 -|/ 2428939 2429400 2429118.4 2428908 2429428 - gene protein_coding_gene FALSE TRUE AT1G07860.1 unknown protein -0.290333346985841 -2.54014595716202 0.0276768208466951 1 1.90603005534278 2.47480468819394 -0.290333346985841 0.132951717301721
AT4G34910_at 4.24668284939545 4.49003142419055 4.14828269457916 4.00165152464767 4.08330863035361 3.99657294461269 4.57458670354615 4.17569845766847 3.39637419518226 3.59845700729024 3.23289098578900 3.38665108702028 3.71344507079698 3.27241731839884 3.57055218633073 3.32560418589465 3.4230894700631 3.38625705042904 3.77194596893167 0.202636272527422 0.194884551437462 0.194610807113821 0.196766591230696 0.201735665721192 0.200189692590362 0.210066716607669 0.206672196938468 0.200324187743375 0.197058973843081 0.202222642945853 0.201834606349844 0.201889711225649 0.216769395118528 0.198631205087877 0.197277902484161 0.203637085062838 0.203292542907038 0.211747647494534 4 4|0 +|/ 16633916 16634798 16634391 16631538 16635154 + gene protein_coding_gene FALSE TRUE AT4G34910.1 DEAD/DEAH box helicase, putative (RH16) Identical to DEAD-box ATP-dependent RNA helicase 16 (EC 3.6.1.-) (RH16) [Arabidopsis Thaliana] (GB:Q9SW44;GB:Q9ZS05); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to Os03g0728800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051149.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE86657.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.244679107306465 -2.53867220020566 0.0277492157747845 1 1.90374804899096 7.71599647519508 -0.244679107306465 0.0860682356839907
AT3G13782_at 2.87556641591594 2.63912254340861 3.67628344397879 3.08985720588520 3.52363493515980 3.26128700850554 2.54234459256776 2.38681745882056 2.72947774918674 3.01799518323481 2.70570430298665 2.18703630103722 2.76078087483988 2.69767056561968 2.59273779342849 2.63990869262658 3.23770634197725 2.80114086342991 3.02429531155642 0.199078645213149 0.195661372987093 0.202056325013608 0.205571770399306 0.20217983865181 0.204124429671770 0.202142674125194 0.199202672119468 0.20454372703605 0.200536072668946 0.198324421792452 0.199107545455876 0.199503649454000 0.196102206683509 0.194963363970645 0.195291655341145 0.203631111913381 0.201974078238499 0.206938010429935 3 3|0 +|/ 4527694 4528322 4528014.5 4526667 4528405 + gene protein_coding_gene FALSE TRUE AT3G13782.1 NAP1;4 (NUCLEOSOME ASSEMBLY PROTEIN1;4); DNA binding similar to NAP1,2 (NUCLEOSOME ASSEMBLY PROTEIN1,2) [Arabidopsis thaliana] (TAIR:AT2G19480.2); similar to nucleosome assembly protein 1-like protein 4 [Nicotiana tabacum] (GB:CAD27463.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) 0.277857932352334 2.53737536292406 0.027813073742613 1 1.90174018036828 5.8127434330232 0.277857932352334 0.121485922297285
AT3G05460_at 2.14199183047935 2.03906166210378 1.96831528335871 2.04731216262301 2.18254254617955 2.4544507720263 1.77362840471615 2.05036154307769 1.73265805969372 1.81853546527078 2.28485643522442 2.06406961721531 2.38383066620462 2.01470810697622 2.05528348851388 2.22310856907767 1.69708013684922 2.41528727949576 1.96545516033324 0.222073107241818 0.233381104004354 0.239786823198086 0.240571800823414 0.222892499953978 0.227940649866420 0.234721464404259 0.232236969112301 0.231633658717372 0.230672040379740 0.227312330323895 0.229142467247086 0.222799064627049 0.232849651169104 0.223350093560535 0.226277438702566 0.236447125265286 0.222073107241818 0.231714167474149 3 0|3 /|+ 1578251 1578582 1578370.444 1577806 1578740 + gene protein_coding_gene FALSE TRUE AT3G05460.1 sporozoite surface protein-related similar to mitochondrial associated cysteine-rich protein [Canis familiaris] (GB:AAV65760.2) 0.232644736649024 2.53708239192835 0.0278275199909163 1 1.90128660366860 4.07278849184251 0.232644736649024 0.0707940465056535
AT1G67940_at 7.9959729392852 8.31319657139113 8.22908326776525 8.29602649561454 7.8139213740177 7.60101783518232 7.39468207891908 8.19657454052858 6.85489118751316 6.95062388178169 5.81322535833727 6.12661178628956 6.49854929871091 6.51306013675085 5.28197618700293 6.62872802337773 6.82645095381518 6.01402549980466 6.74505390129434 0.222993226933314 0.216483295923731 0.221346067489681 0.221961793955554 0.214713689060414 0.234673494466830 0.217740485254587 0.211929941766009 0.223205609046625 0.222982824235329 0.213494648675175 0.219519625829588 0.217514945090478 0.222639712494493 0.21508478037844 0.216927461511029 0.234556132958354 0.220241097327292 0.218591434665245 1 1 + 25481685 25482300 25481989.727 25481333 25482466 + gene protein_coding_gene FALSE TRUE AT1G67940.1 ATNAP3 (Arabidopsis thaliana non-intrinsic ABC protein 3) member of NAP subfamily Identical to Non-intrinsic ABC protein 3 (MRP-related protein 1) (NAP3) [Arabidopsis Thaliana] (GB:Q9C9W0); similar to (P-GLYCOPROTEIN 7, PGP7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G46540.1); similar to putative multidrug resistance protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53904.1); similar to Os06g0695800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058453.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.313727770368985 -2.53621253624512 0.0278704555565664 1 1.89993994992642 14.5115684190251 -0.313727770368985 0.154151948776025
AT3G21480_at 3.01595382657766 3.04848124359579 3.11640834521336 3.08523675981291 2.39752022376789 2.87311982696174 2.19042437259834 2.59111417356656 1.82639639105803 2.24993461641806 2.25122259665225 3.05067934027346 2.22038899629809 2.00083067992761 2.92911266528638 2.88831249177587 3.06743176180939 2.67836468067517 2.71626527487311 0.227801027579078 0.224559594844765 0.218239984456559 0.230605983233174 0.218239984456559 0.218239984456559 0.220893307383698 0.231969276036382 0.229255582131978 0.238162860170496 0.230133499989377 0.230035541077757 0.254289162288262 0.231942577751167 0.225504976391719 0.222881113368747 0.229407204343205 0.218239984456559 0.235384125011293 3 3|0 +|/ 7571054 7571620 7571303.833 7567736 7572167 + gene protein_coding_gene FALSE TRUE AT3G21480.1 similar to BRCT domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G03130.1); similar to BRCT [Medicago truncatula] (GB:ABE87308.1); contains InterPro domain BRCT; (InterPro:IPR001357) 0.264086012829299 2.53575224585628 0.0278932015322703 1 1.89922739107312 5.23977817769696 0.264086012829299 0.107903017522681
AT1G68750_at 0.800559067562423 0.901032809659616 0.64482598925728 0.682696591764994 0.833812342634306 1.09899824270062 0.678808855833917 0.960797593119988 0.288290492504363 0.488104211183104 0.558045737587303 0.729074264027504 0.788154764851827 0.898476991186881 0.582902167606557 0.652821718118278 1.14650730044935 1.45437090910900 0.327343034805506 0.201594001070399 0.198455122291403 0.198471122557272 0.19970193502606 0.196124279902315 0.199546781439713 0.196124279902315 0.200622570507035 0.196124279902315 0.200557563057821 0.208926249530932 0.196433039939448 0.211237573655694 0.202233306329083 0.201343413336304 0.197439785843128 0.196124279902315 0.208839820052005 0.202241687959936 1 1 - 25826639 25827173 25826957.636 25826605 25831770 - gene protein_coding_gene FALSE TRUE AT1G68750.1 ATPPC4 (Arabidopsis thaliana phosphoenolpyruvate carboxylase 4); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 4 (EC 4.1.1.31) (PEPCase 4) (PEPC 4) (AtPPC4) (PPC4) [Arabidopsis Thaliana] (GB:Q8GVE8;GB:Q9CA39;GB:Q9SX35); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.3); similar to Phosphoenolpyruvate carboxylase [Glycine max] (GB:AAS67005.1); similar to Os01g0110700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041799.1); similar to Phosphoenolpyruvate carboxylase 2 (PEP carboxylase 2) (PEPCase 2) (PEPC 2) (GB:Q6R2V6); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) 0.231582681082371 2.53544558148033 0.0279083659531834 1 1.89875266764148 1.43479484212401 0.231582681082371 0.069517668556687
AT2G46910_at 8.32120743440333 8.25057453800482 7.6165087524506 7.59017196446576 8.77450134704194 7.47264913987378 9.20906987342772 9.1116995383043 8.66705964935299 8.97239627287162 9.21084245534848 8.91980828132979 8.84173751817498 9.02299375724328 8.99352899085767 8.91507601449767 8.26885408602523 8.7111765204698 8.78690435389953 0.16856530966125 0.164655103873695 0.184857450916392 0.173814169112315 0.168928795163125 0.187569320203943 0.173822603468860 0.172580237385506 0.193997082018825 0.168221038094354 0.165811838747262 0.164655103873695 0.164655103873695 0.181900108396205 0.174863232864404 0.168467598702769 0.186777100419958 0.175305198115258 0.165970522417890 2 0|2 /|+ 19279999 19280894 19280510.444 19279350 19281071 + gene protein_coding_gene FALSE TRUE AT2G46910.1 plastid-lipid associated protein PAP / fibrillin family protein similar to plastid-lipid associated protein PAP, putative [Arabidopsis thaliana] (TAIR:AT4G22240.1); similar to fibrillin 8 [Coffea canephora] (GB:ABD39695.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.403982300395854 -2.53523434439810 0.0279188162439842 1 1.89842567368120 17.1279423043472 -0.403982300395854 0.226297198202806
AT4G37220_at 2.24769997924190 2.60860996664999 2.79242186967888 2.80961614315948 2.91345814776263 2.89350484792413 3.32237391985762 3.37006078314573 2.62219920694611 3.04568128234209 4.07778797594519 2.94754108740145 3.12093579096582 3.6363483217801 3.30655311094652 3.12229954893269 3.55913966431675 3.82065084521507 3.21189743262088 0.211985316341798 0.208320561888897 0.20437013542879 0.205656774862322 0.205592530350623 0.207319290372883 0.204266249026604 0.203727442832924 0.215808724854529 0.203727442832924 0.206808004064669 0.205837826763207 0.209025936814249 0.216498137997597 0.204438177974461 0.206253782143089 0.203727442832924 0.206226398670954 0.209608454913376 4 4|0 +|/ 17515138 17515898 17515499 17515074 17516156 + gene protein_coding_gene FALSE TRUE AT4G37220.1 stress-responsive protein, putative similar to COR413-PM2 (cold regulated 413 plasma membrane 2) [Arabidopsis thaliana] (TAIR:AT3G50830.1); similar to putative stress-responsive protein [Tamarix androssowii] (GB:AAT01418.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.227022579562862 2.53300657769183 0.0280292621991734 1 1.89497739307915 6.07413471575637 0.227022579562862 0.0631646756769473
AT1G74880_at 9.09608834832537 9.10021368703912 8.50493160344744 8.59267238321964 9.40150102857545 8.9769729542627 9.84248224284643 9.97611318454957 9.34414445131934 9.8011794653849 9.79811411352651 9.90203223589508 9.9317789888138 9.84232299028481 9.51589282774254 10.3580074427292 9.45519111584253 10.0100042297905 9.93307985151945 0.137613380586372 0.139382662019152 0.154958666556398 0.151590858716911 0.136022918368539 0.140036854070232 0.134690444090717 0.138709670928252 0.151129782750014 0.135757463790426 0.132231649015499 0.133536254483630 0.132184539762721 0.139915808829446 0.136596379243952 0.136228595953272 0.152163002320185 0.144362620660017 0.137782428554560 1 1|0 -|/ 28133902 28134608 28134334.75 28133519 28134738 - gene protein_coding_gene FALSE TRUE AT1G74880.1 NDH-O (NAD(P)H:PLASTOQUINONE DEHYDROGENASE COMPLEX SUBUNIT O) Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. similar to Os01g0959900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045462.1) -0.237919068155127 -2.5316646908597 0.0280959957922303 1 1.8929005919942 18.9586065536096 -0.237919068155127 0.0785059535149364
AT1G28370_at 3.15464805884292 2.91363194539614 3.17177386934589 3.67712915269429 2.40956714891897 2.56847906766719 2.11612418090523 2.00070859741235 2.08839952682014 2.75436056831455 2.21912373743219 3.03430550801957 2.45924063755719 2.83486428394633 2.43736262104385 2.15325910138306 2.69290231192555 1.94371323033884 2.25218258800522 0.243617311968530 0.241879585755942 0.247487564182449 0.243044345685867 0.250336701353855 0.245274143488292 0.242857772253289 0.241146899141605 0.242606822079332 0.252382054407156 0.247302922599598 0.253466266321250 0.247900785970696 0.243150856731038 0.246335628589198 0.249218857954842 0.243097910944984 0.241146899141605 0.244229546480550 1 1 - 9956351 9956740 9956525.636 9955955 9956926 - gene protein_coding_gene FALSE TRUE AT1G28370.1 ATERF11/ERF11 (ERF domain protein 11); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 11 (Ethylene-responsive element-binding factor 11) (EREBP-11) (AtERF11) (ERF11) [Arabidopsis Thaliana] (GB:Q9C5I3;GB:Q9SGN4); similar to ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G15210.1); similar to putative ethylene-responsive element binding factor [Brassica rapa subsp. pekinensis] (GB:ABI54330.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.25866232429664 2.53130871559675 0.0281137250169586 1 1.89234969156836 5.16992141431577 0.25866232429664 0.102679397987555
AT2G31390_at 9.10686328346293 9.0381892873998 9.2039447291019 9.21296264706487 8.8144644011498 8.50539892378716 7.51406479015551 7.73158577524009 7.66956756244069 6.97847244537485 7.05502896199474 6.98405997366769 7.20191810830376 7.49427364128335 7.10628240944047 7.37702764550731 7.12616940765695 6.70573475437747 7.13098065591168 0.210608725696948 0.206299170901378 0.20768679070508 0.210659319802206 0.209534429632016 0.212490499061312 0.208369228989702 0.212742109822737 0.216926134603970 0.207711292982175 0.209604814005214 0.204605890660143 0.206333476600859 0.207880086038889 0.204296638366341 0.20702489751746 0.218487107016448 0.211623307219331 0.204296638366341 2 2|0 -|/ 13390723 13391922 13391299.2 13390500 13393286 - gene protein_coding_gene FALSE TRUE AT2G31390.1 pfkB-type carbohydrate kinase family protein Identical to Probable fructokinase-1 (EC 2.7.1.4) [Arabidopsis Thaliana] (GB:Q9SID0;GB:Q94F01); similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to putative fructokinase 2; S2 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ10000.1); similar to putative fructokinase 2; S1 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09999.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.229077599707286 2.53106355877975 0.0281259413529816 1 1.89197029959457 15.8364269383476 0.229077599707286 0.066493152873061
AT3G60260_at 6.23764749446267 5.91699851018721 5.14449564603044 4.70984092242176 5.67939497381675 4.72453721463447 5.12830612755353 4.67097789537878 4.66038334396255 4.25447324280723 4.28826588291289 4.21625541130605 4.08898589693119 4.44541181422344 4.36260129780731 4.31173085218813 4.01792387880364 4.19736182861976 4.79507265935472 0.217311822621709 0.216245862650281 0.214343423877739 0.217045581009557 0.214343423877739 0.219258371022492 0.222848633917063 0.214343423877739 0.221674914080738 0.219034068359185 0.219243587856922 0.214343423877739 0.215637732466175 0.226004269618866 0.219363753469617 0.214343423877739 0.225972866668272 0.214343423877739 0.220923382106619 3 3|0 +|/ 22286296 22287782 22286940.6 22284818 22288123 + gene protein_coding_gene FALSE TRUE AT3G60260.1|AT3G60260.2|AT3G60260.3|AT3G60260.4 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT2G44770.1); similar to Os04g0545100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053465.1); similar to Os02g0652300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047599.1); similar to phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93689.2); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) -0.376412312597737 -2.53098956079402 0.0281296297481722 1 1.89185578542819 9.68204660967264 -0.376412312597737 0.205683527315274
AT3G01850_at 7.05858742310307 6.81696653234814 6.92418532709271 6.88424786488098 7.7583744257119 7.22679980272334 6.18527373383794 6.30808352871255 6.45552747962886 6.38016130656447 6.39978586273259 6.31334483343164 6.46453715527462 6.7191698918332 6.4323216013652 6.50655112713476 6.42830325534144 6.18235613354368 6.71888932521138 0.184246565828837 0.185594356756040 0.189492666312284 0.193000879978333 0.18831515110311 0.189194419206861 0.193499187065903 0.189491913192168 0.187689288667828 0.191506759185011 0.187928223728367 0.183162186565573 0.185810042306850 0.186593054170866 0.187055827424876 0.187624410579207 0.193581272375555 0.186050162270274 0.183862488788247 3 3|0 -|/ 300440 301362 300776 299994 302045 - gene protein_coding_gene FALSE TRUE AT3G01850.1|AT3G01850.2 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative similar to ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative [Arabidopsis thaliana] (TAIR:AT1G63290.1); similar to Ribulose-phosphate 3-epimerase, cytoplasmic isoform (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5-phosphate 3-epimerase) (PPE) (GB:Q9SE42); contains InterPro domain Ribulose-phosphate 3-epimerase; (InterPro:IPR000056); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060) 0.259388789691189 2.53097986487328 0.0281301130720145 1 1.89184078073556 13.3698092979932 0.259388789691189 0.103490375892197
AT1G09950_at 1.91216841021424 1.62303716504315 1.66782716478383 1.92711556354035 1.18947651482725 1.22919185064122 1.76199312539785 2.27695731556006 2.28047143199928 2.00056610020152 2.18111768333691 1.68960609071083 2.17329714122605 1.82951592694673 1.83251189858438 1.55589536548500 2.26241872183944 1.85829969906341 1.92134116654333 0.183302497754459 0.181634084690299 0.188422751026823 0.194907246836682 0.187471520278660 0.191014386857193 0.191607891666612 0.192769122894286 0.184677029286762 0.18746434405295 0.184971915910087 0.181634084690299 0.184197735406423 0.188330531334077 0.182766177955118 0.187821477373893 0.191420128175051 0.184461545004764 0.191309309953306 1 1 - 3240884 3241361 3241096.818 3240608 3241634 - gene protein_coding_gene FALSE TRUE AT1G09950.1 transcription factor-related similar to ZW2 [Arabidopsis thaliana] (TAIR:AT1G58330.1); similar to tumor-related protein, putative [Medicago truncatula] (GB:ABE86163.1) -0.267381490477305 -2.53065303444681 0.0281464097379708 1 1.89133500800203 3.69361707982456 -0.267381490477305 0.111830378912124
AT1G17920_at 0.699322386299414 1.10546188866883 0.761017926406739 0.394694734884738 0.984094802523969 0.729210714057499 1.26894881152442 0.879587201488756 0.957958927562884 1.03867926091105 0.987392569074543 0.926487077364804 1.29602657032321 0.930340177417616 0.71679579056059 0.844610834376732 0.944030441555758 0.711596307389083 1.6291880260683 0.214928839585397 0.212572513488514 0.21914431020441 0.216314876198944 0.212572513488514 0.214848722779676 0.212572513488514 0.212572513488514 0.227192754455003 0.220168182847874 0.212572513488514 0.212572513488514 0.220153801392482 0.212572513488514 0.216228456188593 0.213802690288440 0.220143728668268 0.214728067143426 0.219695046226615 1 1 - 6163448 6164108 6163748.6 6161865 6165375 - gene protein_coding_gene FALSE TRUE AT1G17920.1 HDG12 (HOMEODOMAIN GLABROUS12); transcription factor similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73360.1); similar to baby boom interacting protein 1A [Brassica napus] (GB:ABA54874.1); similar to baby boom interacting protein 1B [Brassica napus] (GB:ABA70759.1); similar to homeodomain protein HOX3 [Gossypium hirsutum] (GB:AAU12247.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.280012147350036 -2.53059161692395 0.028149473219194 1 1.89123996517947 1.91692666282606 -0.280012147350036 0.124275702473193
AT3G11710_at 9.46702646613103 9.4022185128001 9.33245634930315 9.41812068602266 9.27195835309136 9.04804484572659 9.3753041056563 9.31143637647403 9.19565148260466 9.17320866027732 8.76967315480658 8.91707446103554 8.67551032937066 8.59726022736028 9.24376797187075 8.8428836021048 9.08196531334714 8.88181358555166 9.1921334458549 0.110319041250911 0.106200901603136 0.109938104361507 0.102581248347274 0.107478462697842 0.113454770099405 0.103838986418503 0.108014480845329 0.129246891120455 0.104807482969669 0.112620027531296 0.105905334581239 0.105403643956132 0.112765725652595 0.114023359341823 0.103423154158785 0.109050094721991 0.108903335958788 0.106456805747504 3 3|0 -|/ 3702486 3703018 3702743.889 3702175 3705720 - gene protein_coding_gene FALSE TRUE AT3G11710.1 lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G13490.1); similar to Lysyl-tRNA synthetase, class-2; Aminoacyl-transfer RNA synthetase, class II [Medicago truncatula] (GB:ABE86616.1); similar to Lysyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97356.1); similar to Lysyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97357.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364); contains InterPro domain Lysyl-tRNA synthetase, class-2; (InterPro:IPR002313) -0.216052794480392 -2.53044086911985 0.0281569938463754 1 1.89100668663516 18.3599414336973 -0.216052794480392 0.0443758844582081
AT1G14270_at 8.98809395452895 9.00227436341162 8.60130910252679 8.37999628148202 9.02170332336334 8.7101746637575 9.70162670590345 9.24201084133 8.64096482588199 9.36015789211563 9.3966981704194 9.31094907218818 9.09047072169706 9.07423910570904 9.4099340385782 9.23559875904702 8.7956874589929 8.80698359571991 9.30922433567803 0.158334101415325 0.150410481324092 0.152540299027313 0.161923238434393 0.156610170034603 0.162753031531951 0.153213989836399 0.155061848349061 0.206137697347827 0.147422044808784 0.152847213721966 0.151888572651353 0.149866313845459 0.163714378210307 0.156575486783900 0.151218759343515 0.173958851391810 0.166525497119563 0.149432261032956 1 1 - 4875228 4876162 4875657.091 4874870 4877243 - gene protein_coding_gene FALSE TRUE AT1G14270.1|AT1G14270.2|AT1G14270.3 CAAX amino terminal protease family protein similar to CAAX amino terminal protease family protein [Arabidopsis thaliana] (TAIR:AT5G60750.1); similar to CAAX amino terminal protease family protein, putative [Solanum tuberosum] (GB:AAU90306.2); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.259292263054506 -2.53023981965563 0.0281670270323700 1 1.89069557133559 18.0776582211309 -0.259292263054506 0.103468354172205
AT3G07750_at 2.53324617950754 2.88194654801739 2.43495367721203 2.30351050164304 2.31407347394188 1.80483241749673 3.23814198334566 2.63600593589104 1.40613365120859 2.12630069157259 1.75938472949447 1.84234646550617 1.78110733530588 2.13884526846707 1.60874745426016 2.14052418358163 1.96409276880534 1.93035204477526 2.18616187991952 0.210165988064672 0.209056689331967 0.206049680660810 0.206525197839475 0.206049680660810 0.207474938686800 0.216434623439092 0.217603871319951 0.215142948179977 0.220424200725182 0.218272772563563 0.20888337952526 0.210292852169227 0.209034991727562 0.211233663528823 0.207568401479728 0.210438177056221 0.207248322251401 0.211437332742141 3 3 + 2474158 2475198 2474824.091 2473241 2475453 + gene protein_coding_gene FALSE TRUE AT3G07750.1|AT3G07750.2 3' exoribonuclease family domain 1-containing protein similar to 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] (TAIR:AT3G12990.2); similar to Os12g0403800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066622.1); similar to hypothetical protein LOC550247 [Danio rerio] (GB:NP_001017585.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247) -0.30925817687136 -2.53002636433822 0.0281776831616431 1 1.89036526331775 4.41927572571928 -0.30925817687136 0.150941322234958
AT2G41310_at 4.20291415475317 3.76404680167829 3.77268635196274 3.43540888492048 3.95294051803421 4.07318510546676 5.52535788632595 4.89762742971024 3.74487600592164 4.47975238923973 4.31195998164970 4.51070700416753 4.44690537577441 4.66465201784039 5.18943276634446 5.07097231545062 5.08836764733588 4.40663564279425 5.36579613941933 0.219240121951734 0.222523291939065 0.226043035656022 0.225094424050414 0.219735682020396 0.220164973196339 0.228139771786369 0.234067957937879 0.239181573019202 0.219363418300336 0.23036284157743 0.22923731501457 0.226175677153416 0.219730776579304 0.235147278557443 0.218830296587423 0.234934142019838 0.218651380201676 0.224489994849733 2 0|2 /|+ 17229569 17230567 17230051.444 17229011 17231505 + gene protein_coding_gene FALSE TRUE AT2G41310.1 ATRR3 (RESPONSE REGULATOR 3); transcription regulator Encodes an A- type response Regulator that is primarily expressed in the root and is involved in cytokinin-mediated signalling. Identical to Two-component response regulator ARR8 (Response reactor 3) (ARR8) [Arabidopsis Thaliana] (GB:O80365); similar to ARR9 (RESPONSE REACTOR 4), transcription regulator [Arabidopsis thaliana] (TAIR:AT3G57040.1); similar to SRR198 [Striga asiatica] (GB:ABG35780.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.303934385314053 -2.52961500995066 0.0281982299821829 1 1.88972873350177 8.82369369432976 -0.303934385314053 0.146317173844086
AT4G25610_at 2.95901001462686 3.25065435826532 3.65326604784308 3.32244787047686 3.02153698044122 3.45773657722094 2.7451078960996 3.03822629172069 3.29916510510224 2.96400105610670 3.40499000074037 3.19232206475442 3.49466454112298 3.27945767624509 3.39901270059925 3.14092005969018 3.19971294893911 3.09251508680898 3.01487456220179 0.187007625016025 0.196110161741209 0.198632692011526 0.187825467333014 0.187684773209026 0.198113636101098 0.187007625016025 0.194882215969859 0.200802762384509 0.193863679115527 0.189193280815555 0.198558025452888 0.192417941551765 0.192762318421744 0.192610400619695 0.187218899804264 0.18971678683146 0.187007625016025 0.195539888330504 4 4 + 13066125 13066537 13066293.4 13063273 13067237 + gene protein_coding_gene FALSE TRUE AT4G25610.1 zinc finger (C2H2 type) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os09g0570200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063984.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.274133186271522 2.52918694697878 0.028219626996902 1 1.8890663683475 6.36506306758655 0.274133186271522 0.118726796800499
AT2G04060_at 0.493868952107604 0.375795775725330 0.626803616338044 0.52971077563849 0.451982345058171 0.564875527300935 0.439323754879185 0.796491943290947 0.911035821647084 1.10744569279466 0.533479092852363 0.648977532609427 1.00488554282487 0.944125206174954 0.350299888318670 0.570617581022154 0.725673834009684 0.61673066108821 1.44360028811918 0.223225158078245 0.216881239780807 0.221769237422555 0.232489981180276 0.216881239780807 0.220435290297842 0.216881239780807 0.224425224167234 0.226961588013399 0.219646892197226 0.220451809377599 0.222784632509728 0.220182847596209 0.222141109594658 0.222313791060243 0.216881239780807 0.223272007897787 0.219460282401734 0.228168741353698 2 2|0 -|/ 1342152 1342855 1342426.9 1342134 1345161 - gene protein_coding_gene FALSE TRUE AT2G04060.1 beta-galactosidase, putative / lactase, putative similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G31740.1); similar to beta-galactosidase [Man (GB:CAJ09953.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.231352820287311 -2.52907401123826 0.0282252748219309 1 1.88889162004739 1.44904455373376 -0.231352820287311 0.0700138792271564
AT3G15350_at 6.92610070115249 6.69109624577388 7.26608594301788 7.11828490212715 7.06391022318345 6.31731583962747 7.31386436094534 6.97323809189486 5.07191605420358 5.60521306432966 6.0365638120428 6.45164959747698 6.03697497778608 6.17176275487716 6.07533224133529 5.31500042443993 6.10758532776502 6.34835772877954 5.57477190892977 0.196797555275322 0.191040487705085 0.194095167589449 0.194143415677851 0.195941217787299 0.191644707284724 0.190036738090346 0.193455027312243 0.197453102365555 0.190237877834765 0.188144620619891 0.189823147939963 0.194361793942775 0.203096710389399 0.192177308106907 0.190685060371027 0.189448730938505 0.188144620619891 0.188144620619891 3 3 + 5168123 5168634 5168419.182 5166213 5169158 + gene protein_coding_gene FALSE TRUE AT3G15350.1|AT3G15350.2 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to acetylglucosaminyltransferase [Arabidopsis thaliana] (TAIR:AT1G53100.1); similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G27480.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) 0.307963696311265 2.52901552433482 0.0282282001406942 1 1.88880112234232 12.7013388887406 0.307963696311265 0.149919850203878
AT1G05150_at 6.66250248943944 7.29318068183782 6.84858206757823 7.12555730457326 7.90235103125032 7.40449500114224 7.38242257678108 7.40776435671837 6.81182913754927 6.44425764724209 7.6749585315153 7.52453096942615 7.16970290729739 7.40430311743886 6.99966517055134 7.58062656611496 6.57966426745644 6.73782478060071 6.94329622002539 0.232456827182512 0.22252693046762 0.232285376080951 0.233527977654209 0.228305191208988 0.241378894566876 0.234444236776625 0.229259570430296 0.241562039580768 0.230361335159238 0.22252693046762 0.226767615411576 0.224933278006835 0.250810828551634 0.232453814778719 0.228848918485380 0.253748930920766 0.240777515042215 0.230093287083009 1 1 - 1484301 1484814 1484619.727 1484066 1486959 - gene protein_coding_gene FALSE TRUE AT1G05150.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT2G32450.1); similar to Os03g0263900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049638.1); similar to O-GlcNAc-transferase-like protein [Castanea sativa] (GB:AAL15891.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.304780347734863 2.52884952389931 0.0282365045467264 1 1.88854426928764 14.2243755422013 0.304780347734863 0.147144616127229
AT4G02160_at 1.31889200910918 1.11836303391033 1.83045658043591 1.62152059553009 1.61972414112204 1.25278759591715 1.46234269434334 0.959473757895063 1.64527637778547 1.44549678824399 1.23432305678623 1.86465642646671 1.93395742476640 1.67757889957443 1.88056681214392 1.59825404372233 1.81577882741869 1.87300741943052 1.5676124975941 0.189780719990180 0.187258684947056 0.190001217201315 0.192427569013196 0.189131536562804 0.185682083328053 0.188052455257590 0.193307232216614 0.184757298713427 0.198228958906932 0.192197153354904 0.190915006710041 0.186192989147191 0.196364053300986 0.192215294891506 0.191468564978293 0.189226829683855 0.184473948516889 0.194917115401081 4 4 - 955310 955558 955450.545 955101 955652 - gene protein_coding_gene FALSE TRUE AT4G02160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61710.1); similar to Os01g0930500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045290.1) 0.274162248508808 2.52862568801366 0.0282477060493217 1 1.88819793199068 3.04172534353114 0.274162248508808 0.118815066363278
AT1G65380_at 4.2363571227233 4.77067171469911 3.58084080415067 4.35547531965053 4.30089723240735 4.13540723257842 3.82472310085017 4.58820697478558 4.36481745322295 3.91430155122205 3.39413662206957 3.85746750282163 3.59514247098079 3.35190229914512 3.23373751129536 3.94694434943678 3.49300644250122 3.43533908211779 3.85320277446573 0.217335288016247 0.208617314804108 0.212659785919815 0.210978404608184 0.208582229340333 0.210192654848337 0.220888416873207 0.208582229340333 0.213446469298679 0.218207089133 0.210954966638555 0.213757162555384 0.214752661881403 0.218251422293670 0.214879420167175 0.21716389681761 0.208582229340333 0.212567082569321 0.211216402250176 1 1 + 24292259 24292730 24292456.182 24290489 24292912 + gene protein_coding_gene FALSE TRUE AT1G65380.1 CLV2 (CLAVATA 2); protein binding Receptor-like protein containing leucine-rich repeats. Regulates both meristem and organ development in Arabidopsis. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G36180.1); similar to Os02g0603100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047363.1); similar to fasciated ear2 [Zea mays] (GB:AAL17871.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.383741152829336 -2.52844388998418 0.0282568070453191 1 1.88791664314128 8.01535583507211 -0.383741152829336 0.211654080612037
AT3G14010_at 8.26515049360293 8.25408167229532 8.21863729935603 8.21836828756097 8.93495035152417 8.501965575878 8.03278124427753 7.47889365560655 8.9216461950836 8.81629245386442 9.14131486755183 8.7604791620739 8.89307966109465 9.13846547618344 8.6440207365096 9.18815311871944 9.01809173072646 8.86093476607328 8.849803119041 0.108694409817317 0.108038262920289 0.111876147655257 0.115001215110209 0.109251606397382 0.110457315779568 0.111271276989207 0.120467095202874 0.122263841499316 0.109810568099052 0.105527264491317 0.10891570836775 0.105816250787458 0.105527264491317 0.108920368234647 0.105527264491317 0.111139768383281 0.111638924066473 0.106734057183036 3 3|0 +|/ 4639718 4640505 4640088.333 4636372 4640988 + gene protein_coding_gene FALSE TRUE AT3G14010.3|AT3G14010.1|AT3G14010.2 CID4 (CTC-Interacting Domain 4)|CID4 (CTC-Interacting Domain 4); protein binding hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. similar to CID3 (CTC-Interacting Domain 3) [Arabidopsis thaliana] (TAIR:AT1G54170.1); similar to Os02g0480900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046850.1); similar to Ataxin-2, N-terminal [Medicago truncatula] (GB:ABE81532.1); contains InterPro domain Ataxin-2, N-terminal; (InterPro:IPR009604); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920) 0.276870231335558 2.52653174703372 0.0283527053651721 1 1.88495827914723 17.1471775871108 0.276870231335558 0.121679688393900
AT3G04240_at 9.2086527962075 9.04583880050509 9.73903004126239 9.6658152845558 9.56175415778629 9.29203430456072 9.41947744422075 9.41768564678359 8.56329624875462 8.84395419949423 8.7311236491159 8.98596470168052 8.6602610011821 8.90601202675271 8.88989235251015 8.82421637413663 8.91134827671306 8.8196277060545 8.65949358645045 0.107159881802667 0.103477424294919 0.105213172283445 0.104295708108948 0.104479321492136 0.103951951159061 0.104054888092802 0.111753663918217 0.111359289529937 0.107824366068022 0.108997618871706 0.103997135026531 0.106897660361251 0.103477424294919 0.108857062787063 0.103477424294919 0.106361519311153 0.108864955762415 0.105286344669352 3 3|0 -|/ 1114201 1115103 1114611.8 1113941 1120879 - gene protein_coding_gene FALSE TRUE AT3G04240.1 SEC (SECRET AGENT); transferase, transferring glycosyl groups Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene. Identical to Probable UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT) (SEC) [Arabidopsis Thaliana] (GB:Q9M8Y0); similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [Canis familiaris] (GB:XP_858769.1); similar to PREDICTED: similar to O-linked N-acetylglucosamine transferase isoform 9 [Canis familiaris] (GB:XP_858842.1); similar to putative O-linked N-acetyl glucosamine transferase [Oryza sativa (japonica cultivar-group)] (GB:BAD21873.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.221942928948583 2.52634319577978 0.0283621789216393 1 1.88466658453353 18.1837712791109 0.221942928948583 0.0559747731246352
AT1G74810_at 4.38847518226174 4.44979614412208 3.9547298359057 4.40551559430241 3.13737163016199 3.7281482930152 3.86645648123372 3.99389045190215 4.60993171159864 4.81696823722643 4.52830852046722 4.40404841382293 3.96335876034848 4.23367283038991 4.28167309556718 4.31711591687836 4.59547632414710 4.84077743927759 4.37436625769551 0.190386900767599 0.190210819176135 0.190771370587296 0.193522589903888 0.196250929699675 0.195182119029134 0.196221660272700 0.190644064971765 0.189590124213668 0.192896023808458 0.187254995884194 0.187254995884194 0.191262518951027 0.187254995884194 0.194493949292311 0.188854130819756 0.189848596271683 0.187254995884194 0.192435758415693 1 1 + 28114368 28114984 28114608 28112135 28115195 + gene protein_coding_gene FALSE TRUE AT1G74810.1 anion exchange family protein Identical to Putative boron transporter-like protein 3 [Arabidopsis Thaliana] (GB:Q9SSG5;GB:Q9C9P1); similar to anion exchanger [Arabidopsis thaliana] (TAIR:AT4G32510.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange protein family [Arabidopsis thaliana] (TAIR:AT5G25430.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:ABD78950.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:ABD78951.1); similar to band 3 anion transport protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD67809.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) -0.286540691380724 -2.52620245492372 0.0283692523202860 1 1.88444885662312 8.4885359423394 -0.286540691380724 0.130908108671995
AT1G11380_at 2.44268805096164 3.19720637037323 3.25075933065607 2.73468491516763 4.01814721291698 3.46700748653184 3.85812138117357 3.46715242975331 2.98417675933177 2.98046357834804 5.06913804202787 3.41062306715700 4.42814644736297 4.14583223870635 3.06235732541136 3.49263967394817 3.78527418597439 2.88885691905267 3.58535353718904 0.276211138618879 0.264970190036091 0.268382672249409 0.264970190036091 0.266614459976311 0.279256232871656 0.274500386029401 0.270522920921974 0.267039222844541 0.269547401759052 0.274602770954760 0.264970190036091 0.265588166426381 0.267828336316665 0.266365325352728 0.264970190036091 0.291336316622900 0.272966458158356 0.265335505698979 1 1|0 +|/ 3832924 3833896 3833460.111 3832623 3834191 + gene protein_coding_gene FALSE TRUE AT1G11380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05350.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABD32347.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.364192437042423 2.5256725150202 0.028395901742148 1 1.88362905229434 6.7888157867308 0.364192437042423 0.196723074844410
AT3G05500_at 8.76188746579966 8.86805409242962 9.0740127679222 9.19404243915907 8.1791353453391 8.37812928902676 9.04134888875057 9.11102683877435 7.95575970714953 7.86925565433281 8.59523347961374 8.70358977835467 8.74146029611775 8.45092007301717 8.6735615841117 8.5078563194883 8.07568753063473 8.37560868261174 7.70591465782338 0.129725844680164 0.129824131398459 0.132691875870996 0.131915481721637 0.131378344310246 0.140331101046421 0.134271680106951 0.134594004431813 0.150260962220227 0.144222552227825 0.140420837501877 0.132533657101561 0.129725844680164 0.134200994688439 0.134117271769266 0.133176157299234 0.1414890879992 0.139118553005388 0.136623565088389 3 3 + 1594005 1594707 1594462.727 1593440 1595021 + gene protein_coding_gene FALSE TRUE AT3G05500.1 rubber elongation factor (REF) family protein Identical to REF/SRPP-like protein At3g05500 [Arabidopsis Thaliana] (GB:Q9MA63); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to Stress-related protein (GB:Q9SW70); contains InterPro domain Rubber elongation factor; (InterPro:IPR008802) 0.216298508574188 2.52498681934928 0.0284304202104531 1 1.8825683433217 17.0055211697813 0.216298508574188 0.0458291360968607
AT3G16850_at 8.8834933227921 9.08168688200827 9.20782585135165 9.13640973891892 9.41741116752056 9.35779097595987 9.49389196978817 9.58901828025703 10.2499959630100 9.83035934327198 10.7564107542153 10.5567549269639 10.6829889747304 10.5654368436010 10.4885742004829 10.4431082782602 9.91370640609335 10.4459455392246 10.133074350449 0.0922183393620685 0.0897285404852126 0.0960215279997228 0.0892419862810996 0.0890827663583282 0.0893186868648987 0.0907491736803447 0.0869008588435456 0.0994852137330428 0.0919408936120483 0.0901278888902681 0.0869008588435456 0.0881389437697765 0.0901416333387736 0.0932432850640645 0.0869008588435456 0.0924199814291706 0.0930187318423067 0.0883374308395239 3 3 + 5750397 5750880 5750612.727 5748576 5751303 + gene protein_coding_gene FALSE TRUE AT3G16850.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G06770.2); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.214154670631239 2.52498669859908 0.0284304262927392 1 1.88256815653665 19.5473205032530 0.214154670631239 0.0413106277145001
AT1G02020_at 5.37182683169832 5.15411706413926 5.07570072849886 5.03395339755441 5.08446961745691 5.1021494894046 4.98090535901129 5.20796139021886 5.75316834733055 5.23714496489216 5.17747712263521 4.84087675958399 4.89268337174547 5.41842534839721 5.23680771133878 5.52788539599237 5.29993012440673 5.20405671779671 5.62256372171718 0.168884273999982 0.172020068707023 0.176411552993136 0.170042811901829 0.173028312762612 0.175782750805071 0.166142739787363 0.170044336089010 0.176851452975736 0.173910865387265 0.172664000833785 0.17210424643007 0.178398708243225 0.172796373722321 0.171363415661981 0.165038175378576 0.175055123008474 0.171919157511983 0.179350900997177 1 1 - 352873 353478 353135.455 352637 354969 - gene protein_coding_gene FALSE TRUE AT1G02020.1|AT1G02020.2 nitroreductase family protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93466.1); contains domain no description (G3D.3.40.109.10); contains domain NADH oxidase/flavin reductase (SSF55469) -0.221246106015570 -2.52492691412110 0.0284334378424659 1 1.88247567782714 10.4950822332313 -0.221246106015570 0.0549996477186016
AT2G40770_at 4.12559432226345 4.61897662460808 3.83172702961361 3.86227519211037 4.25344319611934 4.28356515773626 4.19349158695793 4.47040789005665 3.84935100523386 4.18527927029138 3.77713764643904 4.09099275477757 3.88990748748759 3.84417087529544 3.59147123055674 3.99988077354582 4.11178904699387 3.88525453168293 4.30202264781239 0.206220694972013 0.201858484391753 0.211217114924445 0.205306655733507 0.208264358267129 0.214944576655298 0.203153634500659 0.202079321414459 0.211575533922924 0.207401003510235 0.205717384420790 0.201541758506637 0.19826750876292 0.205373509287140 0.204967053150961 0.202056661603661 0.218475118748284 0.198115955887735 0.205670648405537 2 2|0 -|/ 17020617 17021383 17021001.5 17020347 17028393 - gene protein_coding_gene FALSE TRUE AT2G40770.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger (C3HC4 type RING finger) family protein similar to RAD5, ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G22750.1); similar to SNF2 histone linker PHD RING helicase isoform a [Mus musculus] (GB:NP_001071175.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.253878529920899 -2.52487694165801 0.0284359553674300 1 1.8823983773136 8.21045671716317 -0.253878529920899 0.0981922071716974
AT4G15360_at 0.481156932067845 0.759317514828611 1.11793178339655 1.20318440943434 0.610593836155719 1.11459883181328 0.811779256902442 0.992168716544794 0.922197689883364 0.696552405140063 0.718584103910594 0.827239320870088 0.988744260361407 1.13878497563136 0.620657804180061 0.710770425355101 1.27960836175370 1.45252361582039 0.470505891383913 0.201562756466369 0.202807190164229 0.208491430746456 0.208080535942702 0.202932135617695 0.201562756466369 0.201562756466369 0.201621738601752 0.201771984195804 0.201945123696404 0.202565138733735 0.204964889512265 0.201562756466369 0.201562756466369 0.208519261217583 0.205394562754989 0.212369497885898 0.202106696491627 0.209422171408665 4 4 + 8771283 8771822 8771615.727 8770223 8771899 + gene protein_coding_gene FALSE TRUE AT4G15360.1 CYP705A3 (cytochrome P450, family 705, subfamily A, polypeptide 3); oxygen binding member of CYP705A similar to CYP705A33 (cytochrome P450, family 705, subfamily A, polypeptide 33), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20960.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.260583528231804 2.52474127577259 0.0284427910794983 1 1.88218852227197 1.71810779545351 0.260583528231804 0.105435989637089
AT3G56200_at 6.98741935226977 7.59965060846555 8.50749356237004 8.69143480236756 7.9479872796168 7.37888696449505 8.79823191023492 8.68395767502516 7.40281038726223 7.28220076162086 7.10742818841861 4.83642867815943 6.75230482886162 6.95368559262609 4.98000676975118 6.26914819907191 7.13493757953866 6.67320371847355 6.51331958936195 0.193858576986251 0.183867221394407 0.190588960752186 0.193342541332720 0.189352496176414 0.190118847544825 0.197380046612819 0.189291930570786 0.191042454027426 0.183867221394407 0.186094959612193 0.192768841771670 0.188754571028011 0.195453333098159 0.197777282306434 0.184757775470585 0.207197295270209 0.195952777187242 0.197703602435111 3 3|0 +|/ 20862142 20862733 20862358.2 20861008 20863001 + gene protein_coding_gene FALSE TRUE AT3G56200.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G40420.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE86055.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.306790768002767 -2.52398459258202 0.0284809471873596 1 1.88101808259714 14.7766343645778 -0.306790768002767 0.149428995592235
AT3G09980_at 8.25555538605081 8.38534519422597 8.59500333012693 8.48795405787148 9.32113032208177 8.63777910925337 8.77687977649166 8.71430343423032 7.88553878264048 8.70570336745447 9.16138188074086 8.70966721536596 9.01278939919589 8.77626715740017 8.36929996970833 8.94150465953519 8.64760251034055 8.1696231731998 8.59868001721352 0.166123894728979 0.166969967331296 0.16299484974857 0.165136186788813 0.165416465652688 0.176136155361399 0.168165886670604 0.178062201270318 0.18426553755402 0.163244367107825 0.158909819385374 0.164143916879644 0.164438075616816 0.174465030147313 0.169155871403089 0.158909819385374 0.179351253089762 0.177733341347003 0.158909819385374 3 3|0 +|/ 3069373 3070519 3069592.75 3069236 3071425 + gene protein_coding_gene FALSE TRUE AT3G09980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03660.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033); contains InterPro domain t-snare; (InterPro:IPR010989) 0.277161015166694 2.52363913101207 0.0284983839444806 1 1.88048374267848 17.2068226853525 0.277161015166694 0.122268921362233
AT1G32270_at 1.54712544157463 1.63047478896967 1.89019017499180 1.84015525036422 1.62675253143136 1.56080425567778 1.24289736446782 1.48147194682625 1.9963348016405 1.20248947999998 1.62144202679054 1.60769232582629 1.18376095640232 1.96856401701206 1.87793952397605 1.68011838184800 1.87149131164303 1.63408194148779 1.30768660342516 0.224271620743541 0.221795828600256 0.22744112677852 0.222630370254941 0.225375819718855 0.217985557034644 0.224599893494920 0.214850326117395 0.221502287367168 0.214268688794351 0.236637358321727 0.219014424352610 0.219924689295367 0.224716413632727 0.215528463607190 0.223800933792652 0.224963705767930 0.224295602425308 0.221239617361832 1 0|1 /|+ 11643970 11644724 11644344.75 11642573 11644942 + gene protein_coding_gene FALSE TRUE AT1G32270.1 ATSYP24 (syntaxin 24) member of SYP2 Gene Family Identical to Putative syntaxin-24 (AtSYP24) (SYP24) [Arabidopsis Thaliana] (GB:Q9C615;GB:Q9LQN2); similar to VAM3 (syntaxin 22), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G46860.1); similar to syntaxin-like protein [Solanum tuberosum] (GB:ABA46757.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847); contains InterPro domain t-snare; (InterPro:IPR010989) 0.216224591629040 2.52301601721894 0.0285298613504565 1 1.87951997975099 3.19388727211051 0.216224591629040 0.0460200522101851
AT1G27190_at 6.75134578621553 7.27941596602334 7.09867931733804 7.07405720841262 8.04689585584238 7.72224311596706 7.44460928065021 7.72014467074515 8.06727779094772 7.53682438132265 8.57092306481884 8.3941633770321 8.27513499949406 7.83010816579652 8.10617771944355 8.24041791578103 7.767212289702 8.35498716048133 7.9000732328931 0.203358440825785 0.188067920985515 0.209300359051801 0.197434547300863 0.190404354710066 0.192006086228525 0.191605080382768 0.184647108696140 0.193107337133427 0.192245138899478 0.192459341124077 0.193431099847139 0.187245091388261 0.208710618875572 0.182695556522705 0.191162335703839 0.194002701820733 0.188396749764569 0.188908509798758 1 1 - 9446920 9447464 9447221.455 9446644 9448812 - gene protein_coding_gene FALSE TRUE AT1G27190.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G28450.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G69990.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78632.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.272127699997828 2.52241451819917 0.0285602792125678 1 1.87858968889995 15.4057317609609 0.272127699997828 0.117471300031795
AT1G56330_at 10.2432357065950 10.3448988959787 10.5308686555768 10.6097907395598 10.0657577140855 9.94356795551362 10.4072995991049 10.5234995160949 9.62092045375372 9.71448987081349 10.4221903046362 10.5157402585768 10.2050726523594 10.1541924977494 10.4186878147835 9.83466750234046 9.74637507680611 9.84093153836067 9.54294980943066 0.104582782915969 0.105783702679575 0.104582782915969 0.106498773525376 0.106096905564396 0.11484076872273 0.104582782915969 0.105627349244964 0.113496560049832 0.106202093332819 0.104582782915969 0.104582782915969 0.107592163522102 0.111654093222463 0.106972768209288 0.108546662682556 0.10990629171929 0.113445201244454 0.111134070942575 1 1 - 21090518 21092117 21091159.273 21090220 21092214 - gene protein_coding_gene FALSE TRUE AT1G56330.1 SAR1 (SECRETION-ASSOCIATED RAS); GTP binding Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. Identical to GTP-binding protein SAR1B (SAR1B) [Arabidopsis Thaliana] (GB:Q01474); similar to ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G02080.1); similar to GTP-binding protein SAR1B (GB:O04267); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.211937498888086 2.52208788251369 0.0285768105373182 1 1.87808452417585 20.2177909729974 0.211937498888086 0.0367091559479935
AT2G29580_at 4.92271807779739 4.8717255829067 4.31761090481815 4.50368265941973 4.23046714626815 4.9582198817805 4.55090847120242 4.71391780274523 4.43317011779304 4.19749058232825 3.88022637257291 4.15530115288437 4.42799123737282 4.00694090328595 4.04985636055533 3.70765802278675 3.68750075502273 4.24230328027406 4.37293194522853 0.223570078863284 0.218521328210373 0.221442742997126 0.222691963764255 0.225541079402846 0.222037701899094 0.220779609249541 0.220320357716694 0.234412225852054 0.221130495559813 0.221155098989154 0.217418426975019 0.222529499397427 0.221381029282216 0.228684720833239 0.217418426975019 0.221299337777013 0.229188081337693 0.227269293027977 2 2 + 12660678 12661193 12660901.455 12659000 12661413 + gene protein_coding_gene FALSE TRUE AT2G29580.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G07360.1); similar to RRM-containing RNA-binding protein-like protein [Solanum tuberosum] (GB:ABC01900.1); similar to RRM-containing RNA-binding protein-like protein [Solanum tuberosum] (GB:ABB72821.1); similar to U2 auxiliary factor small subunit [Medicago truncatula] (GB:ABE89510.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.288565478390106 -2.52129316986913 0.0286170708691984 1 1.87685549544819 8.8107828870561 -0.288565478390106 0.133310402136482
AT3G11590_at 5.03709900161519 5.38116351145044 5.30688494882216 4.82925804836124 5.17993826412448 5.58964635227388 5.1536931089385 5.17933195126006 4.88307716368658 5.04384425735005 5.56370510759802 6.36134592294505 5.04975132163637 5.31415766148478 5.75142833087625 5.59130123665246 5.30995315011971 5.51062583802363 5.18617043561945 0.209356074347123 0.21669906818941 0.209958545678649 0.215751335631338 0.210250308914755 0.212356082519626 0.208878248261855 0.210124123342692 0.215241477982329 0.215243439093031 0.216860089594226 0.213188171463741 0.212723061592307 0.217528875963234 0.208878248261855 0.211170656771487 0.210956419146237 0.217636219790284 0.211334775798702 3 3 + 3662978 3663488 3663235.182 3660383 3663740 + gene protein_coding_gene FALSE TRUE AT3G11590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22310.1); similar to Os04g0382800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052610.1); similar to OSJNBa0072D21.15 [Oryza sativa (japonica cultivar-group)] (GB:CAD40733.2); similar to unnamed protein product; gb|AAF24581.1 gene_id:MBK23.17 strong similarity to unknown protein [Medicago truncatula] (GB:ABE79740.1) 0.278723147847202 2.51971782708639 0.0286970426410601 1 1.87441942438321 10.5042423267153 0.278723147847202 0.124193208569948
AT3G13225_at 4.7146304364037 4.91389404152685 4.96518010091355 4.73147118296689 6.15935104492104 4.75381740388488 4.52229458810488 4.51057082577769 4.48804405510168 3.94175918521541 4.3191917211702 4.63649217701291 4.55776591042263 4.44497557667831 4.48960467004969 4.63249079165873 3.92489144910225 4.97666020824882 3.93480766676188 0.265187270848596 0.254781633374474 0.268085074099062 0.265099889012499 0.27673765276464 0.286863120630357 0.260322192796999 0.262892508715359 0.281471560253769 0.25808497402874 0.254781633374474 0.257745998094680 0.255016337232460 0.274971547075816 0.259003532840718 0.269746985214184 0.268336886628650 0.263571957276991 0.254781633374474 3 3 - 4259849 4260352 4260099.273 4258777 4262903 - gene protein_coding_gene FALSE TRUE AT3G13225.1 similar to PREDICTED: similar to Formin binding protein 4 [Gallus gallus] (GB:XP_424260.2); similar to Os06g0298400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057442.1); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) 0.431664777117464 2.51945548755758 0.0287103814983136 1 1.87401377591440 9.21854921909707 0.431664777117464 0.248981588234496
AT1G19980_at 3.07513905229509 3.61814763187120 3.21946761892508 3.41833864992268 3.43965046261063 3.64342948958793 2.98265567250951 2.93973084920008 2.21224205572490 2.11664833853453 2.60887287884567 2.51499227023265 2.46708499133157 2.58161208614179 2.26215145700413 2.56759905049625 3.02413582449277 2.20899169939566 2.52281776050574 0.231543601871232 0.219209266031042 0.22076553481742 0.224780331874825 0.221968017322387 0.222122391655611 0.230223503100129 0.233419670154363 0.225828056469270 0.223357110581627 0.221975545772616 0.224814001778182 0.220744536364739 0.226107923770518 0.226196890970137 0.221609824331510 0.224915520633622 0.220633755926155 0.221330150766381 1 1 + 6933977 6934584 6934317.545 6933015 6934993 + gene protein_coding_gene FALSE TRUE AT1G19980.1 cytomatrix protein-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G77580.1); similar to H0207B04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH65908.1); similar to Os04g0117200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052051.1) 0.260915283890054 2.51941205668092 0.0287125903616415 1 1.87394662067435 5.69873630361409 0.260915283890054 0.106365488982928
AT1G12090_at 12.6121232248113 13.0152651658627 12.8971486501528 13.0136126720188 13.1763530582209 13.2264106655825 13.1924067335603 13.3868434142079 13.4097303395207 13.3555822283689 14.1233243732314 13.8253545958700 14.1073239445124 13.8797356715838 13.6654189771175 13.6299462314274 13.3482808830117 13.783834697275 13.2714652605260 0.0826033476986198 0.0792231255656413 0.0821781792714617 0.0803578736385443 0.0792231255656413 0.0856714518476078 0.0792231255656413 0.07974913757013 0.0963859038000395 0.0827250295623957 0.0796830631529737 0.0792231255656413 0.0792231255656413 0.0836542100246295 0.0811405297430923 0.0792231255656413 0.0841131737825375 0.0876102964702465 0.0795407712268466 1 1 - 4090189 4090554 4090310.364 4089845 4090723 - gene protein_coding_gene FALSE TRUE AT1G12090.1 ELP (EXTENSIN-LIKE PROTEIN); lipid binding extensin-like protein (ELP) similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to extensin-like protein [Brassica napus] (GB:AAK30571.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.238265719582473 2.51876436499946 0.0287455512821182 1 1.87294514875181 26.6355179636649 0.238265719582473 0.08050273058239
AT2G37550_at 5.40682100071896 5.12727425143549 5.03500482687872 4.87322026367984 4.81448482229185 4.85997413539129 5.05437951921848 5.17284045961553 5.26975479711689 4.83478648750052 6.19168688948977 6.13684207362317 5.79700646670392 5.60969062029065 5.73965066801141 5.47273031469749 5.35658623606453 4.797911407191 4.58231619792042 0.186121221923337 0.190140006106437 0.203199570925668 0.197243074313788 0.184157543348020 0.185730744569075 0.188684233170557 0.180769244378352 0.196621965905482 0.190956384408500 0.197648479649939 0.188555843840925 0.184303819357222 0.19667491492547 0.189475200054672 0.180477047006056 0.185099163628206 0.190565059314826 0.179365589661849 2 2 - 15762630 15763605 15763029.909 15762175 15764679 - gene protein_coding_gene FALSE TRUE AT2G37550.1|AT2G37550.2 ASP1 (PDE1 SUPPRESSOR 1); DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to AGD6, DNA binding [Arabidopsis thaliana] (TAIR:AT3G53710.2); similar to putative Asp1 [Trifolium pratense] (GB:BAE71192.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.223743063988180 2.51860633677394 0.0287535989421113 1 1.87270080993795 10.3096910325812 0.223743063988180 0.0600534348040995
AT1G16790_at 4.44395547754456 4.44468319526234 3.74310645560337 3.8252101231527 3.94603769352084 4.33554077365673 4.01733767190312 4.48908876361406 3.77007884360868 3.45785977081409 3.61029424002055 3.66694965317351 3.14632822648763 3.11718624731039 3.66285108366623 3.73535807343601 3.52603836041138 3.14831090904542 3.53513368907736 0.181830451303614 0.177639462308721 0.184803219644759 0.180063123533574 0.174980308003387 0.178591321161843 0.179050945168025 0.174047978791656 0.186281363214297 0.177603179865784 0.17673176092887 0.173388978008018 0.177322470743295 0.174995764778142 0.176944604865988 0.173388978008018 0.181656604005993 0.174329695776458 0.175235220053151 1 1 + 5744691 5745021 5744867.636 5744546 5745202 + gene protein_coding_gene FALSE TRUE AT1G16790.1 ribosomal protein-related -0.261159342118546 -2.51760260784747 0.0288047659128638 1 1.87114893774152 7.67529770279585 -0.261159342118546 0.106818793252353
AT1G53970_at -0.166564433740592 -0.00783172892926048 -0.305034452625269 0.224963595649320 -0.413775867382464 0.139515235178776 0.248336576098484 0.172732712497609 0.224555568375413 -0.267393809524669 -0.623429280087266 -0.434476792986737 -0.531930934818595 -0.341219766003304 -0.419600426121564 -0.596981345224281 -0.0626375365221757 -0.460627396738935 0.0370358035445541 0.20459753748159 0.209207535241798 0.202660399655831 0.21145372028804 0.203556074843959 0.213612270259990 0.208957219081689 0.202660399655831 0.212503756833095 0.207800506216978 0.207342656994126 0.203563321494880 0.202660399655831 0.205452303283562 0.212157071983301 0.204801682635344 0.208520017136065 0.203718537918530 0.207101815749018 1 1|0 +|/ 20152220 20152296 20152254.25 20152087 20152566 + gene protein_coding_gene FALSE TRUE AT1G53970.1 unknown protein -0.291089971360546 -2.51754027493041 0.0288079463938378 1 1.87105256811741 -0.231355835747220 -0.291089971360546 0.136036926262216
AT4G23010_at 9.17544337635723 9.47663776927507 9.7469938261163 9.98397769851656 9.63329385340063 9.10860038607143 8.21923029894192 8.16393754348364 8.6215292163362 8.31151083800751 8.27358488438925 7.45361136265893 8.13668776355817 8.18798517344563 7.26453004462407 8.02814554994352 8.34154220712147 8.30315406020164 8.03944061720036 0.133736032359408 0.137964288998519 0.140411706378070 0.145427346182653 0.137612824608057 0.148977566910123 0.136483755183703 0.133675342522154 0.139563479397164 0.130979657478580 0.129347364650148 0.131301964719568 0.131296309643449 0.134868832313527 0.138341108354458 0.130003461910563 0.128833724665638 0.131178865972616 0.133262984006239 4 4|0 -|/ 12060382 12061411 12060830.778 12060142 12062827 - gene protein_coding_gene FALSE TRUE AT4G23010.1|AT4G23010.2 ATUTR2/UTR2 (UDP-GALACTOSE TRANSPORTER 2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12600.1); similar to hypothetical protein LOC664769 [Danio rerio] (GB:NP_001035084.1); similar to Os03g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048771.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.266949550453289 2.51709145218923 0.0288308573398894 1 1.87035867991824 17.3499220213158 0.266949550453289 0.112849680253817
AT1G52810_at 1.22116931395532 1.24012719702972 1.85627191060942 1.32398493754434 1.36833626533293 1.24828898562388 1.06835613935267 0.749720316544296 1.43656370416384 0.861811075697754 0.933112480737548 0.962019428815219 0.86846094206582 1.52809270882821 1.09888868726880 1.23035737778166 1.37681914934849 1.38870461512812 0.778546896431547 0.191836900289847 0.187476585224370 0.188146383622840 0.192190359448517 0.188618007792167 0.193736122241844 0.184844334867291 0.187957856659384 0.188616877563862 0.192929579607723 0.187348659182109 0.190922433385676 0.192571933601807 0.183440586749692 0.18603201764304 0.190094050419780 0.195486430656273 0.192683085691366 0.186469985756882 1 1|0 +|/ 19671126 19671879 19671534.9 19670795 19671905 + gene protein_coding_gene FALSE TRUE AT1G52810.1 2-oxoglutarate-dependent dioxygenase-related similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G52820.1); similar to Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD33293.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.263521824019747 2.51651319311512 0.0288604019343191 1 1.86946471416618 2.35900562450463 0.263521824019747 0.109398605067439
AT3G03570_at 5.80573166934407 6.40891484017619 5.96662736033 6.1612335716911 6.34380472158636 6.33075607728531 5.21215117407623 5.59683073259945 4.88512277855495 4.63794017815117 4.83972227037767 5.16743336928355 5.0515111077318 5.01407330493433 4.72982951488164 4.8768376424533 5.13922200692504 5.0036784679053 5.04869612724515 0.209716533405400 0.206577113165403 0.218382357181503 0.210733916473944 0.214433210693242 0.217792279481735 0.214648374107223 0.210385886702151 0.219959890465697 0.209981012466361 0.205412853152481 0.205412853152481 0.205412853152481 0.212699075566356 0.209861566626612 0.20881019494494 0.213862826137577 0.209718477220332 0.216905755988567 3 3 + 859344 860016 859699.091 856883 860476 + gene protein_coding_gene FALSE TRUE AT3G03570.1 similar to signal transducer [Arabidopsis thaliana] (TAIR:AT4G40050.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54686.1); contains domain FAMILY NOT NAMED (PTHR21243); contains domain SUBFAMILY NOT NAMED (PTHR21243:SF2) 0.282616880626014 2.51580897936399 0.0288964219408018 1 1.86837607830409 10.8957770126588 0.282616880626014 0.128323288298701
AT4G08730_at 1.86463363121418 2.44294893688574 2.18022972127570 2.23478419925803 1.70186147477565 1.74500430130685 1.91147575065135 2.13106011168267 2.47228223990112 2.46339451132860 1.8165217357588 1.98692334471479 2.03385954069446 2.05478648207 1.99396417944849 2.08967661233931 1.99756474696393 2.50746969607762 2.44901678567508 0.202579184691132 0.194511426994366 0.197613553829652 0.197373506587744 0.197483154984564 0.193067606863571 0.204993053524589 0.196819239253192 0.200151595131885 0.206815917168086 0.196179799412394 0.201828723920766 0.193067606863571 0.203071906495278 0.200575523414226 0.194989304503600 0.195806056024534 0.197075731776505 0.206340266005915 4 4 - 5577395 5578748 5578076.909 5577387 5578776 - gene protein_coding_gene FALSE TRUE AT4G08730.1 similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G08750.1); similar to tobacco nucleolin [Nicotiana tabacum] (GB:BAC02896.1); contains domain POLYADENYLATE-BINDING PROTEIN 2 (PTHR10432:SF61); contains domain RNA-BINDING PROTEIN (PTHR10432) -0.261764201748799 -2.51508444817627 0.0289335271771679 1 1.86725609235210 4.28732991816128 -0.261764201748799 0.107726129143879
AT1G01080_at 6.59727394321111 6.64551417805144 5.43588618272088 4.99366646639679 6.01068387889784 5.86415409054801 6.12262777474563 6.53283316253635 6.45256592669444 6.71401797156292 7.06618707328558 7.78056753385439 6.73950595608273 6.51363008804983 7.71933545725182 7.63250494098105 5.92589657955168 6.76006855074089 6.7601805771393 0.228934361844207 0.215141944922482 0.227080911526592 0.219008622997476 0.215994847223457 0.241091936322614 0.220632957881671 0.225200015155932 0.232473639369119 0.225160801990408 0.217696944723162 0.219249600593036 0.218259313145890 0.238416784548881 0.228919779130141 0.219569854005736 0.229968221779345 0.219188700784841 0.222782814378540 1 1 - 45529 46458 46055.636 45296 47019 - gene protein_coding_gene FALSE TRUE AT1G01080.1|AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative|RNA binding similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to RNA-binding re (GB:ABD32708.1); similar to Os08g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060859.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to 33 kDa ribonucleoprotein, chloroplast precursor (GB:P19684); similar to Os08g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060859.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.261753706326364 -2.51482839302459 0.0289466516359475 1 1.86686029449096 12.855063383442 -0.261753706326364 0.107743010495826
AT3G18860_at 8.23652242268235 8.28536298821663 8.54987046380334 8.29901361169367 8.74417301808188 8.48816557055544 8.31747697277823 8.12181382706641 7.99567802764786 7.68863029673265 8.02306993183261 8.40030352689277 7.89916399957012 8.23526205283375 7.65119316374393 8.27335563634427 8.1268021182936 8.00763848431082 8.00192634992589 0.142022410344531 0.151574313798873 0.144122554540265 0.151317697586237 0.146977576410002 0.146184175720839 0.145836065132012 0.147953491825664 0.155304656178441 0.145955664981100 0.150098803715424 0.141087213535863 0.151873402620525 0.142309853376960 0.147161798919225 0.144346871746877 0.153375416219812 0.146044327959442 0.150491510548480 3 0|3 /|+ 6507246 6508326 6507721.111 6501674 6508559 + gene protein_coding_gene FALSE TRUE AT3G18860.1|AT3G18860.2 transducin family protein / WD-40 repeat family protein similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os07g0123700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058799.1); similar to putative phospholipase A2, activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30961.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain PUL; (InterPro:IPR013535)|similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os07g0123700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058799.1); similar to putative phospholipase A2, activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30961.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain PUL; (InterPro:IPR013535) 0.230849334736636 2.51456124206360 0.0289603510479091 1 1.86644735316220 16.3665549455247 0.230849334736636 0.0711712296671373
AT2G15750_at 1.57602698322071 1.72508955466559 0.989915352384649 1.41270616103443 1.19193405654083 1.29779338581917 1.29489990998808 1.55303161877796 1.98300410375195 1.52200477101908 1.39937135664941 1.51751943149058 1.77646324958019 1.69204097899534 1.47961651721641 1.48379557540973 1.68504819504705 1.29831063915851 1.65768775251979 0.200239059948912 0.195368829371643 0.192791270651260 0.194918514692877 0.200699455947132 0.195831140872494 0.208366284702287 0.198129299943525 0.210722325091528 0.197234128889191 0.193243627008732 0.193793141744952 0.197077357732132 0.197523094100200 0.200009249300227 0.202456443888981 0.198397334955079 0.207308358146926 0.198379963333486 2 2 + 6870600 6871173 6870822.727 6870004 6871198 + gene protein_coding_gene FALSE TRUE AT2G15750.1 nucleic acid binding / ribonuclease H similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06845.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.246776455269260 -2.51400145208662 0.0289890775099527 1 1.86558209924607 3.01138443715743 -0.246776455269260 0.0913771059630953
AT4G11120_at 5.0287799186962 5.53401076376988 4.94803275370731 5.12472186532617 5.41890133826362 4.24214158621902 5.86678532337467 5.43920491474152 4.20703414256521 4.53024955377177 3.79360197220708 3.9921639089354 4.18668579615336 4.05870081923396 4.47201872476511 3.96876173509525 3.70454206036240 3.62007216646485 4.06203641165097 0.210263080644126 0.215432173191753 0.203918780599638 0.205686449143653 0.204819874589815 0.210759461216844 0.211821567457750 0.211354578333490 0.212184931853700 0.207908226601899 0.203997804505732 0.200309796601473 0.200309796601473 0.211205392147171 0.202043587232245 0.200309796601473 0.209615249776758 0.212562569929537 0.212188075708366 4 4 + 6778952 6779898 6779331 6777798 6780162 + gene protein_coding_gene FALSE TRUE AT4G11120.1 translation elongation factor Ts (EF-Ts), putative similar to EMB2726 (EMBRYO DEFECTIVE 2726), translation elongation factor [Arabidopsis thaliana] (TAIR:AT4G29060.1); similar to ethylene-responsive elongation factor EF-Ts precursor [Lycopersicon esculentum] (GB:AAD46403.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.41280874118017 -2.51331057184461 0.0290245695845777 1 1.86451427124422 9.32082652496138 -0.41280874118017 0.235638297269912
AT1G16170_at 5.9671812248965 6.7900531639046 6.23632551068828 6.4117524798951 7.48571912348944 6.98752179336814 7.50972828924739 7.730198036213 8.45805140030028 7.77982013185657 8.22461362274522 7.7289852186393 7.8291765172473 7.91684181524792 7.40237220822663 7.61301721171864 7.28441339631034 7.71897924119204 8.2516265691574 0.225342221941750 0.200725630757633 0.222435716890578 0.215363668817126 0.200930704139961 0.205375329449754 0.212025500258123 0.200725630757633 0.206383184809592 0.20079069389235 0.210196507916496 0.203784791147002 0.205238962761599 0.207234032045308 0.200725630757633 0.205013190537607 0.206092050139055 0.204616242164015 0.202558555668455 1 1 - 5538882 5539122 5538994.182 5538726 5539790 - gene protein_coding_gene FALSE TRUE AT1G16170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79660.1); similar to Os08g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061402.1) -0.333663290780311 -2.5131572427368 0.0290324522210984 1 1.86427729234615 14.8287929215565 -0.333663290780311 0.173460894772677
AT3G57490_at 4.35355659611648 5.18650284274338 4.25953701496512 4.31222583864152 4.11719133242972 3.77377583719526 4.99188473822736 4.824659933083 3.48170399630528 3.33537015918604 3.16470454275063 4.43412166956481 3.05447708796398 2.82592763095146 4.40187182864918 2.90818012422809 3.67038181349072 3.3508244001127 3.33777976662246 0.253292533579488 0.251971857686404 0.252379282676068 0.251807407358951 0.244224119178834 0.242740834533187 0.244043693308288 0.248309175151005 0.246252377930718 0.243069297351008 0.243434920890865 0.239410574034137 0.245692326183127 0.244736459421215 0.24684014111181 0.246953226647896 0.248387044816215 0.260881594889776 0.243155942716118 3 3 - 21290829 21291606 21291319.818 21290643 21291925 - gene protein_coding_gene FALSE TRUE AT3G57490.1 40S ribosomal protein S2 (RPS2D) Identical to 40S ribosomal protein S2-4 (RPS2D) [Arabidopsis Thaliana] (GB:Q9SCM3); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to Ribosomal protein S5, bacterial and organelle form [Medicago truncatula] (GB:ABE90730.1); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Ribosomal protein S5, eukaryotic and archaeal form; (InterPro:IPR005711); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.316054345945981 -2.51113785154732 0.0291364649999146 1 1.86115645755606 7.90804798896783 -0.316054345945981 0.158840606090015
AT2G48030_at 4.45304291614624 4.93226010066771 4.75665371499199 4.71636820409398 3.77598199455651 4.91446684113663 2.84677258382599 3.60585420006310 4.94828624354822 3.42694993227404 5.23585541623788 3.66217288828189 3.84599494727201 5.11547333066593 4.13290068510258 3.54474587893124 3.04499697919407 4.23551854423852 3.07844545292818 0.222656823269219 0.219708896264089 0.226307932983216 0.224362952923008 0.219708896264089 0.229578718377699 0.228371161824023 0.221126644721489 0.238577032833667 0.229873727833002 0.219708896264089 0.22299993026133 0.224727460927229 0.228484959936064 0.225352521698692 0.225530397130995 0.239417746568207 0.226094455923354 0.219708896264089 2 2 - 19654934 19655660 19655320.909 19654593 19657218 - gene protein_coding_gene FALSE TRUE AT2G48030.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G21530.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16719.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.432849348004696 2.51058357461527 0.02916507797625 1 1.8602999407957 8.2102256744306 0.432849348004696 0.250996367632265
AT1G68070_at 7.56032814360871 7.85033836065296 7.20418303862175 7.67464239894288 8.54640001421852 8.01910260318483 7.32285032779693 7.29472973415016 7.02670077334484 7.04546389455822 7.14721715819877 7.40308021149306 6.97897492676493 7.27767732160943 7.04438730671587 7.23601809318023 7.47191395421102 7.43715362752473 7.02167981755973 0.211227413231606 0.207795960190173 0.218486799222037 0.202826191861839 0.217164297494271 0.213090230138326 0.209326205487105 0.21857017877872 0.217735167756526 0.213156111225074 0.205941612143347 0.210331141139224 0.213387985787563 0.212042470705361 0.212748760698351 0.217590656408013 0.215852926816775 0.209251619341215 0.212649656097611 1 1|0 -|/ 25519104 25519803 25519451.7 25518895 25520531 - gene protein_coding_gene FALSE TRUE AT1G68070.1 zinc finger (C3HC4-type RING finger) family protein similar to RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS), zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01735.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE90731.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.286145850998901 2.50981869717056 0.0292046078405232 1 1.85911804359718 14.8244889877054 0.286145850998901 0.132278898922897
AT3G25905_at 1.38961352401120 1.91199955960819 1.57759882155407 1.83810289563643 1.42320879314994 1.76589397509302 1.79260120341758 1.52463208452881 1.84335676734364 2.12714905619777 1.08856253567809 1.52929537331118 1.40926642569777 1.34923628369598 1.74367608046574 1.41741455309001 1.25627548621399 1.97658363862825 2.10977148132976 0.212344611005739 0.212344611005739 0.215912944283539 0.220151858262832 0.212344611005739 0.22316555513012 0.213922087331683 0.215793080796072 0.222622391879636 0.212344611005739 0.223205429238980 0.212344611005739 0.212940246845954 0.213648282194582 0.225064951428883 0.212344611005739 0.220576100562521 0.225096028607547 0.216405573194729 3 3 - 9487585 9487817 9487711.545 9487405 9488008 - gene protein_coding_gene FALSE TRUE AT3G25905.1 CLE27 (CLAVATA3/ESR-RELATED 27); receptor binding Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. -0.279490388029589 -2.50981464060167 0.0292048176292317 1 1.85911177552016 3.40198030648558 -0.279490388029589 0.12598452329427
AT1G14440_at 3.33776721669628 3.56190325565274 2.98099700559625 2.9407006524705 3.47121095173455 3.42998695607981 4.61281264593593 4.06464277311483 2.74448480708007 2.19519196241637 2.36062941961226 2.02487839678741 3.18513698270634 2.13386466586726 2.59816920061226 2.50294916651202 3.75404325910004 2.20247537448852 2.32075070278162 0.217065881012543 0.217065881012543 0.217823995549325 0.219464625563591 0.217935426588429 0.226389724694503 0.224105053918000 0.23057574697935 0.224050775627209 0.217065881012543 0.217065881012543 0.225191257054207 0.217065881012543 0.219326206855707 0.222072675696658 0.217065881012543 0.220495405603748 0.218875676302301 0.220393626725544 1 1 - 4939370 4939618 4939485.455 4938819 4940896 - gene protein_coding_gene FALSE TRUE AT1G14440.1|AT1G14440.2 ATHB31; DNA binding / transcription factor|ATHB31; transcription factor similar to ATHB21/ZFHD4 (ZINC FINGER HOMEODOMAIN 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G02540.1); similar to Os11g0243300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067594.1); similar to ZF-HD protein dimerisation re (GB:ABA96146.2); similar to Os12g0208900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066390.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.256715881964127 -2.50961081274404 0.0292153606520525 1 1.85879682983746 6.05770808164517 -0.256715881964127 0.102971216829185
AT2G23440_at 1.83275764543056 1.73493027681396 1.76800149914145 1.69065265426179 1.43645355013965 1.61152796461562 2.16222987597462 1.98238741527150 2.12032739602885 1.6755746566436 1.55001961118475 1.48194732862253 1.89154229410298 1.66779999362347 1.73816592145881 1.85136300623452 1.57723662110834 2.12554530361989 1.80361032132912 0.195334051061337 0.198537457445025 0.196803763251069 0.194863680846930 0.194947896171091 0.191266255586556 0.201699125703727 0.191870852996373 0.191815786535434 0.190977733916213 0.188740149681611 0.190327199101796 0.200257488680271 0.198528207678214 0.190086188735647 0.187345789866662 0.197235563831136 0.191511481756314 0.188899210863991 2 2 + 9986586 9986780 9986695.545 9986485 9986899 + gene protein_coding_gene FALSE TRUE AT2G23440.1 unknown protein -0.216234500502905 -2.50845454819999 0.0292752392292878 1 1.85701031188366 3.57834592753695 -0.216234500502905 0.0485008346685322
AT4G02030_at 7.4779457263726 7.74176803839841 7.12133539752377 7.30108204729574 7.76520969748872 7.01188388927963 7.53317586257403 7.03274085061559 6.95889622909674 6.89261685857753 6.61374103483949 6.95265092925423 6.59880020481189 5.86462822401206 6.29038116884669 6.50933440454805 6.25633193081342 6.4313540522805 6.97205558343758 0.210034813121521 0.201813319730425 0.217391523562949 0.205661045358930 0.201813319730425 0.208704249931002 0.205273051278221 0.207711551980800 0.214441001536798 0.209099826469593 0.202272009760642 0.205468207876968 0.209021491275785 0.218690468250890 0.212094085051314 0.205530699368638 0.215750744010129 0.210826804398234 0.210669704358228 4 4|0 +|/ 896287 897095 896764.8 892176 897318 + gene protein_coding_gene FALSE TRUE AT4G02030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21170.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAR07074.1); similar to Os03g0737800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051205.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP03421.1); contains domain FAMILY NOT NAMED (PTHR15954); contains domain SUBFAMILY NOT NAMED (PTHR15954:SF2) -0.324033337477343 -2.50798645412504 0.0292995142433238 1 1.85628711412720 14.0635638390501 -0.324033337477343 0.165974313373681
AT4G31330_at 2.63885278221736 2.51629828762613 4.20939230763353 4.57341325601649 4.08178706987829 4.02034655465178 5.47316525706407 5.71493348644213 3.03470498681693 3.41964997827474 1.99658011587597 1.51038590831613 2.63143618995312 2.34360796778226 2.0116200812808 2.08639238671492 3.38868609979047 2.64880156813393 2.35105465922500 0.314881900019965 0.314881900019965 0.33079265438103 0.321778625329419 0.322549850895735 0.324244055889084 0.322360880400478 0.350027705164365 0.322210376691362 0.318338430718608 0.321298437840866 0.328107692123559 0.314881900019965 0.314967203469265 0.329868184537085 0.314881900019965 0.320708376408853 0.316959365045318 0.318370626725792 4 4 + 15202671 15203067 15202868.636 15202302 15203437 + gene protein_coding_gene FALSE TRUE AT4G31330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10580.1); similar to Os09g0494600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063551.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55679.1); similar to Os08g0521000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062272.1); contains InterPro domain Protein of unknown function DUF599; (InterPro:IPR006747) -0.236262704000168 -2.50785600539876 0.0293062827322953 1 1.85608557745593 6.78468629077614 -0.236262704000168 0.07925783987118
AT1G45050_at 7.52543326450544 7.37469800193854 7.4833817140574 7.56061476603428 7.96974735758654 7.18284252253852 7.11097142955926 7.08177323569525 6.18920259887904 6.19687470660736 6.46788787859639 6.44597752015092 6.72606927090585 6.62116815284128 6.31322657989737 6.39525363531425 6.4834748944414 5.99676045572926 5.97430299033066 0.240799022888186 0.243331890980875 0.244978305242496 0.244670889813197 0.240987819747225 0.265792480845755 0.240733626691107 0.242771405640735 0.254077339028792 0.242907450918145 0.242864960147059 0.244188353121611 0.24750221539974 0.252061097863204 0.240733626691107 0.240733626691107 0.256671614491789 0.249026363794887 0.24196993260042 1 1|0 +|/ 17033948 17035311 17034380 17033721 17035638 + gene protein_coding_gene FALSE TRUE AT1G45050.1 ATUBC2-1 (Arabidopsis thaliana ubiquitin-conjugating enzyme); ubiquitin-protein ligase member of ubiquitin-conjugating E2-proteins Identical to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42) (UBC2-1) [Arabidopsis Thaliana] (GB:P42743;GB:O48952;GB:Q9MAK4); similar to UBC18 (ubiquitin-conjugating enzyme 16), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42990.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89644.1); similar to Os12g0636800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067367.1); similar to Os03g0681400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050906.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.293514070170899 2.50689612154130 0.0293561346036492 1 1.85460266588631 13.6868598183679 0.293514070170899 0.139387750751995
AT1G08270_at 2.28850143541919 2.07855565580357 2.28289159618512 2.29775725571027 2.4599147317778 2.55527844743098 2.40546178084918 2.18051046831096 2.19343184476378 2.11388545576951 2.72930765666107 2.31316546286961 2.54343896497228 2.40964528247740 2.13121761145485 2.31910103302689 2.90463678030764 2.34767328315452 2.24091553208013 0.193882619707514 0.193571525410132 0.193383598113042 0.194006188575106 0.196760334137638 0.192340220960861 0.195231370489589 0.193345382650027 0.207606163523600 0.20533330303184 0.195450936078443 0.195672597247099 0.192664792798551 0.195310983393007 0.198759135881185 0.192340220960861 0.192340220960861 0.196887921562516 0.196091376373279 1 1 - 2606966 2607266 2607147 2606266 2607504 - gene protein_coding_gene FALSE TRUE AT1G08270.1|AT1G08270.2 similar to AAA-type ATPase family protein / vacuolar sorting protein-related [Arabidopsis thaliana] (TAIR:AT2G27600.1); similar to AAA ATPase, central re (GB:ABE93205.1); contains InterPro domain MIT; (InterPro:IPR007330) 0.220116077254022 2.50666650789733 0.0293680719724556 1 1.85424795464424 4.64111768988755 0.220116077254022 0.0558072580382899
AT2G48050_at 3.82973492328285 2.99901820009070 3.70596073182247 3.12309737695292 4.8909982917317 3.8277946232665 4.30282825308682 3.48428582643402 2.06718854297675 1.87389618383074 3.10392564334668 2.42117892096732 3.07885541500296 3.26840277122443 2.10589424633737 2.93100876999258 3.01598720507890 2.79520888149150 2.35781538995257 0.254842284773881 0.244036111378054 0.246380759205067 0.243754539915487 0.254657885338692 0.250675742298312 0.255916286496456 0.246059152175997 0.258207887480859 0.263349908858004 0.244099256483493 0.237706105833149 0.240192739555880 0.237706105833149 0.246350215572737 0.237706105833149 0.247959632669811 0.251548694622964 0.252077049357139 2 2 - 19660299 19660937 19660630.091 19660284 19664981 - gene protein_coding_gene FALSE TRUE AT2G48050.1 similar to Os01g0388500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043105.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69280.1); contains domain UNCHARACTERIZED (PTHR13167); contains domain gb def: Hypothetical protein At2g48050 (PTHR13167:SF1) 0.486710157323331 2.50587119658420 0.0294094561440936 1 1.85301939071521 6.24031033030028 0.486710157323331 0.291135025854977
AT4G34370_at 5.24208580091488 5.57425845840390 5.00868736189661 5.38642055007853 6.05425133639694 5.81706232363494 4.72424338647096 4.17813155222022 5.53311193493065 5.24286745023064 5.37396053503429 5.03881496397455 4.99133312966465 5.14653966905435 5.34817660981627 5.75778489004105 5.63075055414572 5.61131118218769 5.49197260426265 0.211313278370169 0.207329991195571 0.203654101692461 0.204268899212160 0.203654101692461 0.221627730726080 0.208605448555673 0.211682308736147 0.211996254986363 0.208022147244131 0.203654101692461 0.204348974951169 0.205058265275553 0.224676989950928 0.209625991055638 0.208367465083477 0.224276360384008 0.210069316453474 0.213065977534903 4 4|0 +|/ 16436510 16437007 16436744.4 16434337 16437313 + gene protein_coding_gene FALSE TRUE AT4G34370.1 IBR domain-containing protein similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G27710.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G16090.1); similar to Putative RING zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19129.1); similar to Os03g0233500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049474.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.288304436048888 2.50421944046993 0.0294955882410465 1 1.85046806065956 10.6406348986927 0.288304436048888 0.134884737541339
AT2G25920_at 6.0479446256996 6.13210155067206 5.9414367060878 6.31733894047793 6.32838518362476 6.93497698104316 5.72236995449482 6.10143248988226 5.00884146856674 5.87796598355224 6.02337192530529 5.8757322299873 5.97673764804481 5.63325792115372 5.62605858551408 6.22404868321458 6.26043760856202 5.79167292387597 6.26407497262584 0.215247487741604 0.214309024586924 0.212708630519891 0.210838221900988 0.221847644518148 0.212374451889857 0.215953621199834 0.226119592761564 0.217532401316605 0.230718012151137 0.214296102781464 0.214932771304048 0.213238960746770 0.218891820007881 0.224498656520558 0.214176938245157 0.224282990601887 0.220340379016005 0.223034531321836 2 2 - 11061554 11062170 11061825.727 11061369 11063120 - gene protein_coding_gene FALSE TRUE AT2G25920.1 similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G25910.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84422.1) 0.294513090040087 2.50412290211534 0.0295006299458316 1 1.85031895571058 12.0124360534755 0.294513090040087 0.1405931376969
AT3G48000_at 11.6015030213385 11.6778668394058 12.0975469580766 12.0902730350218 12.1620586081408 11.9153595355808 12.0465092511747 11.9717832370703 11.4044065835572 12.0285072887440 11.8578522933366 11.5098074983603 11.9121984408807 11.8846755732299 11.6464273012747 11.9702633117703 12.1416840364927 11.9303693287222 11.5741042490153 0.076391368958265 0.0762611462151799 0.0722070269557012 0.072219519606495 0.0728078734412886 0.0770786214870265 0.0731201333546901 0.0736403649624824 0.0797728927492547 0.071918091817542 0.0745317825087785 0.0734996743609692 0.071918091817542 0.071918091817542 0.0769259274752736 0.071918091817542 0.0735844821704254 0.0763167447492585 0.074426129164514 3 3|0 -|/ 17728073 17729030 17728434.6 17727852 17731005 - gene protein_coding_gene FALSE TRUE AT3G48000.1 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) putative (NAD+) aldehyde dehydrogenase (At3g48000) mRNA, Identical to Aldehyde dehydrogenase 2B4, mitochondrial precursor (EC 1.2.1.3) (ALDH2a) (ALDH2B4) [Arabidopsis Thaliana] (GB:Q9SU63;GB:Q42090); similar to ALDH2B7 (Aldehyde dehydrogenase 2B7), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT1G23800.1); similar to aldehyde dehydrogenase [Vitis pseudoreticulata] (GB:AAZ79355.1); similar to aldehyde dehydrogenase 1 precursor [Lotus corniculatus] (GB:AAO72532.1); similar to aldehyde dehydrogenase [Vitis pseudoreticulata] (GB:AAZ79358.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.214773814763640 2.50306701266466 0.0295558288046003 1 1.84868818934146 23.7081954424498 0.214773814763640 0.0465413305037085
AT2G35733_at 3.29469088908152 3.16476204403306 3.53900186577233 3.7627546221281 3.4481892948366 3.4299638208163 3.19287396891128 3.27013575917645 3.8249180672637 3.43725793870338 3.8861766440924 3.43099127416324 3.75788022183433 3.67358570700672 3.59722532584308 3.58859199661199 3.9036253292552 3.77103017894172 3.49488078287169 0.175979345312324 0.174059146427880 0.172278809452572 0.173748404106672 0.181132156696224 0.173701294894976 0.182257587014488 0.172453317528066 0.193873887942064 0.189737935881196 0.183420022331488 0.180882135084078 0.174208714836408 0.183632663186327 0.174820406135714 0.176281170357151 0.175367106689437 0.183025815197598 0.185973097801674 2 2 - 15029756 15029922 15029837.364 15029755 15029946 - gene protein_coding_gene FALSE TRUE AT2G35733.1 unknown protein 0.214907237013375 2.50290169446141 0.0295644803206511 1 1.84843287574009 7.03120849859354 0.214907237013375 0.0468362633900325
AT3G54990_at 2.46306454771267 2.90142658053091 2.24059946355585 2.28586815413983 2.49093469858051 2.44642742078955 1.68959894969894 2.1798420216393 1.81700748663049 1.49597053368454 2.02213217412376 2.20775994114474 2.26335737337769 2.41839987900003 2.33590738181133 1.95655554708378 2.16579212070104 2.41586792211552 1.9276692444338 0.215835193190820 0.215247927656673 0.208345648318611 0.215425212557838 0.213242894304414 0.212113518392561 0.208568699659227 0.212307369581277 0.214097427128034 0.216507500266324 0.211716255597598 0.207349758643417 0.216443053083889 0.206029826303293 0.209920215467488 0.208836986887757 0.209386459762015 0.209513770988295 0.216021275479767 3 3|0 -|/ 20386084 20387315 20386739.8 20384695 20387499 - gene protein_coding_gene FALSE TRUE AT3G54990.1|AT3G54990.2 SMZ (SCHLAFMUTZE); DNA binding / transcription factor|SMZ (SCHLAFMUTZE) Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. similar to SNZ (SCHNARCHZAPFEN), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G39250.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE87891.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471)|similar to SNZ (SCHNARCHZAPFEN), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G39250.1); similar to APETALA2B [Ipomoea nil] (GB:BAD36744.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE87891.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.266906765103885 2.50289705316929 0.0295647232469053 1 1.84842570788215 4.32227221158228 0.266906765103885 0.114337897847698
AT1G04530_at 9.98819495696096 10.0988742142345 9.90952531502717 9.9957639286619 10.0424275697465 9.81300981246745 10.7292919462948 10.7945195327015 10.6630359985646 10.2956219966225 10.5613402725516 10.7058925292952 10.4155006164559 10.5067761672369 10.2490507847811 10.7558902199766 10.2494933702331 10.4869910928683 10.4204367401717 0.0826364416240896 0.079880370561653 0.0923717266730036 0.0810393240637688 0.0842750203126147 0.089033900685561 0.0806392325361496 0.0801243140905881 0.0823687694097204 0.0831737710034875 0.0795741914879564 0.0788051746901823 0.0796375140606281 0.0864678438389962 0.0795562527099502 0.079533308703503 0.086714332909877 0.0799914550070635 0.080106449912178 1 1|0 -|/ 1234469 1235488 1234978.667 1234175 1236033 - gene protein_coding_gene FALSE TRUE AT1G04530.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G17940.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92034.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.215434934758463 -2.5028402582613 0.0295676960633078 1 1.84833799590969 20.6469834729091 -0.215434934758463 0.0478877439342723
AT2G25970_at 8.09073939944183 7.95753088051849 8.20199209467446 7.99374892584078 8.05707320015074 8.32659887267753 7.30423193683869 7.69740918451165 7.40861714223603 7.63465277865913 7.53572951599558 7.61028566019045 7.70031142760302 7.96021294470765 7.52777921304927 7.88083655923493 7.6089245816826 7.40601773975161 7.58422221284454 0.161650941965007 0.153110455619115 0.154135261324447 0.157014049409004 0.152762258463355 0.154746159516327 0.152559821160771 0.154390056198980 0.163268852244375 0.158484980361559 0.153761956859373 0.150815065486909 0.153997562719992 0.157195217874799 0.156815798614621 0.152097459729934 0.154674915500787 0.159853011558317 0.157908799486869 2 2 - 11079013 11079488 11079223.636 11078729 11082747 - gene protein_coding_gene FALSE TRUE AT2G25970.1 KH domain-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to Os08g0110800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060823.1); similar to Os02g0224300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046334.1); similar to PREDICTED: similar to Far upstream element binding protein 1 (FUSE binding protein 1) (FBP) (DNA helicase V) (HDH V) isoform 15 [Canis familiaris] (GB:XP_867803.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.246820125185936 2.50086460366105 0.0296712902347866 1 1.84528710222650 15.5517953534268 0.246820125185936 0.0929260301129594
AT1G02740_at 4.70016263461099 4.78663821990592 4.91783418083526 4.98478034478627 4.79245551755042 4.69029806987843 4.42832909288274 4.18635046873233 3.57165527939279 3.39943402006852 3.55055058030784 3.50498454954113 3.56719313474469 3.51626266096692 3.64436085424505 3.66155600743475 4.12493451153337 3.48489980572293 3.59165771119385 0.287084899271013 0.27685691523132 0.291266153149207 0.275004020842982 0.274643066558890 0.285116561027352 0.274643066558890 0.278703956320420 0.303487132107945 0.279898947327280 0.286954648106067 0.28203490621217 0.27697293415608 0.288446315396626 0.292612800188203 0.274643066558890 0.274643066558890 0.28833841981855 0.279777774552835 1 1|0 -|/ 599770 600801 600291.25 599416 602038 - gene protein_coding_gene FALSE TRUE AT1G02740.1 chromatin binding similar to MRG family protein [Arabidopsis thaliana] (TAIR:AT4G37280.1); similar to MRG family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94215.2); contains InterPro domain MRG; (InterPro:IPR008676); contains InterPro domain Chromo; (InterPro:IPR000953) 0.215949508536651 2.5007024253938 0.0296798098851082 1 1.84503667964782 8.26223528278803 0.215949508536651 0.0492368998380695
AT3G08600_at 3.49463534001049 4.1892220946962 2.95775434355437 2.89577999755083 2.90094607345884 3.46415830988059 4.14468221269487 5.40022182670517 6.03720604098895 4.77957016635938 6.86463103577434 6.34046949610644 5.87801048340339 6.20271839087466 6.3239356983845 5.21986778959867 3.8554349027349 5.44788341344131 5.44105560846747 0.254313883945647 0.260205717749264 0.270651057117667 0.267949698025095 0.264289227683296 0.261204130802164 0.248882833124008 0.255573996745297 0.254906792350218 0.253527480235871 0.252896516734025 0.248882833124008 0.255872796026766 0.261611800970646 0.253894287200175 0.248882833124008 0.265060142846653 0.252623335383338 0.254093462459852 3 3 + 2613007 2613557 2613209.545 2612400 2613829 + gene protein_coding_gene FALSE TRUE AT3G08600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22900.1); similar to Os12g0117800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066004.1); similar to Os11g0118600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065599.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16689.1); contains InterPro domain Protein of unknown function DUF1191; (InterPro:IPR010605) -0.452594529032175 -2.50031318304140 0.0297002675864370 1 1.84443565565493 9.2738731114331 -0.452594529032175 0.266968963927226
AT3G12570_at 7.76546177112014 7.93656238130258 7.86554399541545 7.87099863997315 7.96112663416549 7.99813476387816 6.636463238002 7.01563274432228 7.62487580426536 7.00527583518195 7.44781671079313 7.15285359392022 7.35317239153847 7.47516101629602 6.94984938920065 7.33904849380804 7.27914648339281 6.77499592543456 7.40898871369853 0.152801293655361 0.157922746402282 0.161688942261571 0.154726593652128 0.162259713129117 0.164923276775676 0.149740808111335 0.148110471719421 0.154993998502799 0.150996668388473 0.148060563673410 0.148542095604445 0.146224766348268 0.162474478055465 0.146807672332384 0.155143466784694 0.151958541655210 0.153724137068516 0.147218645853402 3 3 + 3990300 3990812 3990563.091 3988677 3991086 + gene protein_coding_gene FALSE TRUE AT3G12570.1|AT3G12570.2|AT3G12570.3|AT3G12570.4 similar to SLT1 (SODIUM- AND LITHIUM-TOLERANT 1) [Arabidopsis thaliana] (TAIR:AT2G37570.1); similar to SLT1 protein [Nicotiana tabacum] (GB:AAG39002.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) 0.230273178752011 2.49963826015967 0.0297357727553084 1 1.84339355833356 14.9151833301540 0.230273178752011 0.072278925034855
AT3G46780_at 11.6400645315041 11.5506416645184 11.0525268749178 10.9008863968820 11.7058584027218 11.3184505837156 12.4361144771396 12.2269378918693 12.2263210186225 12.2182743214596 12.6754874438099 12.5216439839710 12.2709908167788 12.4520488163047 12.5467939600315 12.4545257904634 12.0812026578518 12.5045708611572 12.1394820423867 0.0734476622919763 0.0724862367717916 0.0739460710319351 0.077883002198097 0.0722163692064766 0.0783052933761472 0.0712776602142502 0.072416301254812 0.0829597302820725 0.0719411439783911 0.0711307006699473 0.0730775827272406 0.0711574191016829 0.075650183259469 0.0726915313851558 0.0715494596290126 0.0855075660297172 0.0781059101198937 0.0717024267398012 3 3|0 +|/ 17240092 17240878 17240638.8 17239658 17242186 + gene protein_coding_gene FALSE TRUE AT3G46780.1 PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE18) similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT3G18890.1); similar to Os05g0291700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055100.1); similar to Tic62 protein [Pisum sativum] (GB:CAC87810.2); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720) -0.237646748112733 -2.49929061533135 0.029754077268042 1 1.84285680719606 23.9204853539681 -0.237646748112733 0.0820561906747292
AT1G10640_at 1.92440791690003 1.81226069898169 1.03068193575492 1.14424705667630 1.14511387916996 1.20977816016043 1.33022106335560 1.07516373372229 1.63874516203973 1.49708494393066 1.67808148684437 3.76483791210035 1.79478809464486 1.69367912055715 4.15844775461897 2.27202578267466 1.06471060903901 2.06377579169145 1.28083930685350 0.241605987269957 0.236965930405138 0.238200890211125 0.240885406465600 0.232371416476782 0.244887348881361 0.232371416476782 0.237685153715405 0.237439668272295 0.236559318712960 0.233815235429217 0.25722239401628 0.235420685418935 0.232371416476782 0.251570436732905 0.237789321195972 0.236541418784118 0.235467832269161 0.234056254489927 1 0|1 /|- 3515482 3516029 3515761.7 3515366 3516975 - gene protein_coding_gene FALSE TRUE AT1G10640.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G60590.1); similar to polygalacturonase [Pisum sativum] (GB:AAK50769.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.218006043056946 2.49925983731895 0.0297556983517099 1 1.84280928773564 3.22574253390481 0.218006043056946 0.0532574837474608
AT1G15170_at 4.52123439316685 5.46480445115506 5.583359406853 5.62314749515558 6.17573260829119 5.49906071849733 5.52974704758671 5.15963710064042 4.52130616028825 4.79583347664464 4.59122429823068 4.49864352404233 4.81252508851615 4.76292382289846 4.44548027265961 5.20400217957767 5.28625280432405 4.54110804410227 4.36982695895125 0.29611583602255 0.294122058842131 0.297787623546379 0.30090530437833 0.304059205746212 0.301726332328196 0.292323608424412 0.294364987396618 0.303782290781886 0.292323608424412 0.292323608424412 0.293821325930547 0.292983889849401 0.292841904323562 0.292323608424412 0.292323608424412 0.298402798644536 0.292323608424412 0.298283404635222 1 0|1 /|+ 5221832 5222204 5222064.5 5220636 5222968 + gene protein_coding_gene FALSE TRUE AT1G15170.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15180.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15150.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); similar to Os01g0504500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043143.1); similar to Os01g0684900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043893.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.378458557363937 2.49906074879685 0.0297661864710992 1 1.84250190933787 10.1096365041292 0.378458557363937 0.211011319206883
AT3G23230_at 3.16745076639925 2.76911724517082 2.90350916515860 2.9986421524873 2.69377023649988 2.52067056682469 2.66752150740050 3.07065825069275 3.54236899668319 3.63863738848953 2.9756940093293 3.12052500264868 2.93752078526295 3.23001128943305 3.17430613518063 2.86663064892899 3.01296053225057 3.44084921408121 3.22331224121849 0.203712505139944 0.203047456436427 0.203882610738438 0.206067270926607 0.213598449013617 0.202874355072539 0.210334942613781 0.209910464317104 0.211866267017237 0.210334726478455 0.205079460008019 0.203565866506294 0.211013667549265 0.199722914299953 0.201008771692578 0.204057156527909 0.201129029047152 0.204815431050345 0.205579880434017 3 3 - 8289808 8290037 8289916 8289654 8290073 - gene protein_coding_gene FALSE TRUE AT3G23230.1 ethylene-responsive factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G23220.1); similar to AP2 domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAP53999.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.256416459415428 -2.49861025410558 0.029789932206695 1 1.84180639510395 6.13037669179747 -0.256416459415428 0.103862012848026
AT3G51520_at 8.5308220268731 8.6508202337239 8.60118025558163 8.82566392569267 9.24575725597092 8.92759733295918 8.89181801786946 9.0306256680058 7.9633868611555 7.99996411727973 8.34433279045204 7.86432854642992 8.39692427623377 8.53476056983933 7.65360087895998 8.56241674610074 8.52852952341232 8.38580799577998 7.86999524156407 0.169481124411919 0.172619601568835 0.189669825070578 0.173565648760712 0.174279862650871 0.188745439336806 0.178466891472936 0.174038920275956 0.171860495829066 0.169121274780682 0.170839676638480 0.170507301258230 0.181224601838106 0.176057498998887 0.185236043276405 0.166822418516166 0.190675238812046 0.181269645263417 0.178495757811080 3 3|0 +|/ 19122237 19123206 19122744.286 19121575 19123739 + gene protein_coding_gene FALSE TRUE AT3G51520.1 diacylglycerol acyltransferase family similar to Diacylglycerol acyltransferase [Medicago truncatula] (GB:ABE88819.1); contains InterPro domain Diacylglycerol acyltransferase; (InterPro:IPR007130) 0.231708565917139 2.4977168755938 0.0298370773944971 1 1.84042718787349 16.9521787925350 0.231708565917139 0.0744910957280691
AT3G04790_at 11.4667774121200 11.5627002291674 11.3079546404733 11.2456612804197 10.9284858199179 10.9171845108216 12.0021046874811 12.2371006482153 11.7703998251743 11.9883663413523 12.1127130244310 12.419970764397 11.9506263864541 12.1642755486927 12.3811520309117 12.3401848047028 11.7426056964478 11.9688879926374 11.7763425350346 0.0740397378288315 0.0717763432110403 0.0719119441825581 0.0730290679562989 0.073447937669971 0.0794698541956903 0.0758619892254052 0.0723194228755673 0.0923657088542166 0.0729081137605599 0.0723190935875589 0.0720566425082219 0.0736112974597411 0.0730232808412188 0.0800573554428467 0.0717763432110403 0.0764042029876221 0.0785382721821214 0.0755547982091826 3 3 + 1313624 1314148 1313881.455 1313322 1315249 + gene protein_coding_gene FALSE TRUE AT3G04790.1 ribose 5-phosphate isomerase-related similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to putative ribose-5-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAC83440.1); similar to Os07g0176900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059023.1); contains InterPro domain Ribose 5-phosphate isomerase; (InterPro:IPR004788) -0.213666692053615 -2.49745007431037 0.0298511711409179 1 1.84001531552226 23.4485402860461 -0.213666692053615 0.0452704089819222
AT2G11520_at 7.52390334931872 7.62520996775103 7.91036679895882 7.7353084137229 7.90516432711792 7.59431089248184 6.93082341671771 6.88566560519083 6.11775941251962 6.12497131824361 6.22137594077955 5.8438883949596 5.83017623312421 6.04159038584287 5.8881857356832 5.8301649336564 5.73087012263629 6.08588222373572 5.84543356095409 0.252048991116223 0.240582066731103 0.245332855054888 0.248933572054170 0.240082619202344 0.240838669715514 0.244604767017000 0.242418184696229 0.245618193148334 0.245745992310917 0.245148209855082 0.240082619202344 0.243101610854781 0.241427510584465 0.243702271779134 0.241106022202707 0.257466228586624 0.240082619202344 0.240082619202344 2 2|0 +|/ 4627827 4628499 4628142.889 4625663 4628658 + gene protein_coding_gene FALSE TRUE AT2G11520.1 CRCK3 (calmodulin-binding receptor-like cytoplasmic kinase 3); kinase high overall homology to CRCK1 similar to CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G58940.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.224757836194463 2.49688986253650 0.0298807854814485 1 1.83915052050381 13.4955465181781 0.224757836194463 0.064653360191688
AT4G13985_at 0.804151972156518 0.61646622858714 0.577390169765113 0.329587190618993 0.412082281423811 0.78380142934336 0.793580205571989 0.556698944407557 0.910197526815219 1.28470052881672 0.585791048125693 0.789796267011261 0.526142030900295 0.457995303724654 0.776370981646528 0.671920816976805 0.533670682457538 0.973406590759792 0.777907705962746 0.232049980442949 0.238222261656716 0.235474729706095 0.245534743777368 0.23925838139038 0.234906103157629 0.238575229897800 0.242320101435329 0.238367106598216 0.234036934159782 0.234750145461069 0.238508904126028 0.246162107572831 0.232049980442949 0.235541484212116 0.232049980442949 0.235856727129855 0.248296098429685 0.234254401056142 4 4|0 -|/ 8080116 8080840 8080506.9 8080113 8081664 - gene protein_coding_gene FALSE TRUE AT4G13985.1 F-box family protein Identical to FBD-associated F-box protein At4g13985 [Arabidopsis Thaliana] (GB:Q4PSI6;GB:O23259); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G69630.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE78248.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.246778804278778 -2.49681108156745 0.029884952367652 1 1.83902890985318 1.43688078726692 -0.246778804278778 0.0933405124255568
AT1G66860_at 1.10879882031095 1.60749844067701 1.46851686623393 1.99020658565519 0.98796037965191 1.04944527367343 1.23718293770138 1.43059716939697 1.84399852691839 1.53417500381497 1.28838192959013 0.811409978744248 1.30468817304476 1.21885959553697 0.677100915894372 1.06965885236265 1.05318341129753 1.27185906909544 1.65801680435271 0.188974569026758 0.187242199435961 0.189171139692498 0.193571753955287 0.197492530730007 0.187060372614308 0.198515829192803 0.189098876680383 0.191687069181217 0.192132032583264 0.184033255776879 0.186981570215110 0.196780572019468 0.184563817854187 0.197117045958183 0.184033255776879 0.191801676241081 0.191048285915124 0.184033255776879 1 1|0 +|/ 24946899 24947985 24947403.3 24945851 24948160 + gene protein_coding_gene FALSE TRUE AT1G66860.1 catalytic similar to catalytic [Arabidopsis thaliana] (TAIR:AT5G38200.1); similar to Anthranilate synthase component II [Fusobacterium nucleatum subsp. vincentii ATCC 49256] (GB:ZP_00144555.1); similar to Os01g0138800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041973.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697) -0.281912218358777 -2.49628627862872 0.0299127247900638 1 1.83821881387129 2.74283723535816 -0.281912218358777 0.129739178629711
AT1G06750_at 0.454686915904161 0.519847407862635 0.738931598090267 0.562494534047339 0.161223581522419 1.09955648680393 0.266001735166892 0.0719284931074663 0.242928240698693 -0.0542254356058327 0.193218425387972 0.366566302714271 0.0063804100137034 0.810978891594233 0.63413414791384 0.744479089800745 1.16742513677651 0.643796022016352 0.504739726070069 0.217230601044568 0.222114265748863 0.21466664153641 0.217186431923694 0.216324094892739 0.221229245068532 0.224033585166899 0.213192948070283 0.224653865644116 0.218806674421694 0.225366057766584 0.219027443850796 0.227203343637236 0.219434831409772 0.221915095660216 0.216848522089563 0.218456235376842 0.217116876818763 0.231193616375058 1 1|0 +|/ 2075542 2076317 2075972.8 2074029 2076349 + gene protein_coding_gene FALSE TRUE AT1G06750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30630.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83048.1); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) 0.32608010249763 2.49627027211165 0.0299135722474478 1 1.83819410641527 0.885343750895561 0.32608010249763 0.168984046064368
AT2G18610_at 2.28218635297548 2.09293458516680 2.5913349593484 2.38983252819269 2.2223512316332 1.93688926448956 2.25186571252665 2.15150831557545 2.40975573895147 2.18299562416791 2.37488779981002 2.34691473444622 2.57569501002026 2.17539215223848 2.50511379422734 2.40021810530746 2.49607720262469 2.95180094990302 1.7395280562649 0.195433160582820 0.189989255875258 0.201205282656480 0.193237158041353 0.192217203425982 0.195164161149931 0.196395530679267 0.195953920245710 0.209252136782037 0.193625391930682 0.190741993982779 0.194781869127773 0.195986850227532 0.198998832885798 0.19565664759472 0.189127584013254 0.197502235664066 0.199867217164684 0.199328758874054 2 2|0 -|/ 8083433 8084366 8083823.125 8083430 8084396 - gene protein_coding_gene FALSE TRUE AT2G18610.1 unknown protein 0.228990458232815 2.49620312758983 0.0299171274381802 1 1.83809046331756 4.53437400625533 0.228990458232815 0.0709269987945011
AT3G17860_at 7.8515993791664 8.29966410679336 7.4286601984761 7.66366399488137 7.96926136778432 7.89409084472508 8.37618788429426 8.14094853596091 7.21571494228614 7.17019527476573 8.17981195087848 7.83098611185673 8.25749207704163 8.07139709258847 7.88600976093462 8.14097419537853 8.18921661835558 7.95424904219333 7.01925197188896 0.175924442154469 0.171750274531173 0.166373600562185 0.173318513793866 0.162501171044466 0.165334882879479 0.173515893647513 0.165045731542709 0.189634564660171 0.169233917905658 0.166001331429967 0.165404278998323 0.173041973162217 0.163167999523467 0.167387382736978 0.165146148477149 0.179953117502016 0.169208227201937 0.179876037011143 3 3|0 +|/ 6121772 6122661 6122168.556 6119773 6123017 + gene protein_coding_gene FALSE TRUE AT3G17860.1|AT3G17860.2|AT3G17860.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAD04851.1); contains InterPro domain ZIM; (InterPro:IPR010399)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to hypothetical protein [Nicotiana benthamiana] (GB:BAD04852.2); contains InterPro domain ZIM; (InterPro:IPR010399) 0.250266084043068 2.49571579367563 0.0299429433601981 1 1.83733823935121 15.5524201235771 0.250266084043068 0.0974309964770286
AT3G18350_at 4.73965266458753 5.16719532381471 5.12197766980678 5.1234263224832 5.58458385904312 5.42639458553155 5.55822422099008 4.94016340984204 4.46001461383560 5.24651149436281 5.57802681697879 5.27899151562987 5.28371739819365 5.0500525774462 5.35207934702140 5.43031169116458 5.6664168590021 5.35150786837051 5.3424051895514 0.231824024964055 0.232829724953196 0.229999090020896 0.235393904947508 0.229010767446972 0.251323688241450 0.235527292752204 0.247975236676398 0.244878007478715 0.227569657104440 0.237028215677039 0.2342104327239 0.243725083176965 0.235289298317626 0.227569657104440 0.229811099611064 0.248454976821722 0.24237239346817 0.240337954019552 3 3|0 +|/ 6299905 6300457 6300174.8 6296856 6300679 + gene protein_coding_gene FALSE TRUE AT3G18350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48840.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01350.1); similar to Os10g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064086.1); similar to Os05g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055043.1); contains InterPro domain Protein of unknown function DUF639; (InterPro:IPR006927) 0.285182140525094 2.49551113953404 0.0299537911671518 1 1.83702235399508 10.4028014779170 0.285182140525094 0.132905287398782
AT3G62700_at 9.950006879045 10.0253908987703 9.54296571751848 9.6113639302271 10.0336263738272 9.6430661424212 10.1808716192682 10.4545525419719 8.23220064547543 9.86211695530471 9.89453053623805 10.4074738614803 10.4667854014578 10.1378325603800 10.1751279831546 10.3445277021534 10.1644023306032 9.90973535563518 9.69993175290723 0.108396897131083 0.105273755476300 0.110313217318041 0.113284125028447 0.108844990743866 0.116312248211406 0.107884816755512 0.109192836823887 0.136240264129005 0.110449642802896 0.115520571832486 0.105273755476300 0.105969722247497 0.111242106804284 0.113392759213452 0.105273755476300 0.114894054404436 0.110691017979796 0.109454012989224 3 3|0 -|/ 23201440 23202212 23201806.444 23201243 23206738 - gene protein_coding_gene FALSE TRUE AT3G62700.1 ATMRP10 (Arabidopsis thaliana multidrug resistance-associated protein 10) member of MRP subfamily Identical to Multidrug resistance-associated protein 10 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 10) (ATP-energized glutathione S- conjugate pump 10) (MRP10) [Arabidopsis Thaliana] (GB:Q9LZJ5); similar to ATMRP4 (Arabidopsis thaliana multidrug resistance-associated protein 4) [Arabidopsis thaliana] (TAIR:AT2G47800.1); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59595.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59596.1); similar to ABC transporter, transmembrane re (GB:ABE85045.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.238926119030003 2.49313771513156 0.0300798772685763 1 1.83335931858096 19.6563813883563 0.238926119030003 0.0843895896183286
AT4G03230_at 2.25928212734826 1.94894230368412 2.30764031085459 2.03216265514766 2.16484850010859 2.11498262690778 2.42936598874782 2.0835755488094 2.53316925996701 2.93695090733462 2.59051068403757 2.41916864103866 2.34094452086138 2.42436854120639 2.00974722514271 2.60614873612387 2.38565670670974 2.57038852261014 3.18965467647443 0.220268511643104 0.220741465309508 0.229191002491146 0.227152088784559 0.225682393169402 0.220256119004772 0.225105997325560 0.228876551647039 0.232504794018480 0.223323531405170 0.223776224124234 0.225368673588966 0.229503713022877 0.231841034481029 0.228196477879113 0.221226787396263 0.238612790263384 0.22783200957021 0.236705579699923 4 4|0 -|/ 1419288 1419980 1419524.222 1419278 1422828 - gene protein_coding_gene FALSE TRUE AT4G03230.1 S-locus lectin protein kinase family protein similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11330.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to receptor protein kinase [Ipomoea trifida] (GB:AAC23542.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.24680394313423 -2.49238434141500 0.0301200081257289 1 1.83219673662349 4.82007916360519 -0.24680394313423 0.0938742004237812
AT3G55380_at 6.82857400086622 6.91639916873054 6.46333985899827 7.01214192325046 7.00325789157152 6.8285573816912 5.8578330588042 6.68678343840056 6.09115793373826 5.59206656161053 5.83894448504759 5.97276954525987 6.42271582158871 6.35926901901591 6.51998876773296 6.41086624033744 6.06345004233924 6.07574255644544 5.7052732743382 0.184586012456072 0.180291669715953 0.183896871625023 0.178903423420968 0.182724124007935 0.186934548840633 0.186092656778128 0.183345257110690 0.178727274959715 0.178727274959715 0.186508842201223 0.193278890562871 0.180382759597885 0.199530266323644 0.185499661812840 0.178727274959715 0.194414480392291 0.187700751475248 0.189158703633854 3 3|0 +|/ 20542505 20543753 20543051.111 20542384 20544150 + gene protein_coding_gene FALSE TRUE AT3G55380.1 UBC14 (ubiquitin-conjugating enzyme 14); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2 14 (EC 6.3.2.19) (Ubiquitin-protein ligase 14) (Ubiquitin carrier protein 14) (TAYO29) (UBC14) [Arabidopsis Thaliana] (GB:P42747); similar to UBC13 (ubiquitin-conjugating enzyme 13), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G46460.1); similar to ubiquitin-conjugating enzyme [Arachis hypogaea] (GB:ABI84264.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.333114616834689 2.49205828666954 0.0301373927195025 1 1.83169360058505 12.7016779567641 0.333114616834689 0.175339132758428
AT3G08800_at 1.98291442692623 1.83337689238621 2.04648268942118 1.89023831490303 2.21061853749856 2.12793573589641 1.61802121299697 1.59300595504757 1.99839385350882 2.29936525712285 2.74499302031309 1.90389668083406 2.17692864645661 2.51031661050147 2.26293795698707 1.88588788201486 2.23271520183018 2.28463457160336 2.123746398193 0.225090897634979 0.223300577235277 0.224608044883019 0.224468049429163 0.228732733408905 0.223300577235277 0.223300577235277 0.223300577235277 0.234723418061211 0.22920806313999 0.230673038638658 0.227464531674783 0.223300577235277 0.238042116482683 0.227420790712967 0.223407164563475 0.228713526082306 0.228445734306479 0.226875230206176 3 3 + 2674012 2674885 2674599.9 2671154 2675202 + gene protein_coding_gene FALSE TRUE AT3G08800.1 binding similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN64472.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.210888091316622 2.4917183533174 0.0301555277515444 1 1.83116906201733 4.10821954943076 0.210888091316622 0.0403020450778414
AT1G55970_at 3.57240727441266 3.02732704913337 3.33419178899679 2.82746694371727 3.90345123661131 3.62162996923078 4.27172774987673 3.91869212385798 3.91840634029731 3.98644426864149 3.80699284214086 3.10581862766457 3.75083937758662 3.63134746295676 3.26364409392282 3.52277867614675 3.78095608565343 3.70806967147486 3.80686582267041 0.205396178412354 0.207305527350666 0.206309062545943 0.203074802631782 0.203752743654325 0.207952576272019 0.207006781926639 0.203068464494171 0.211504503859776 0.209202771525783 0.206926732146558 0.204920986717821 0.213086353960737 0.202114232727176 0.203031775609445 0.203921053068171 0.211674864859504 0.206146878015794 0.202114232727176 1 1 - 20936335 20936889 20936602.091 20935794 20941955 - gene protein_coding_gene FALSE TRUE AT1G55970.1 histone acetyltransferase 4 (HAC4) Identical to Histone acetyltransferase HAC4 (EC 2.3.1.48) (HAC4) [Arabidopsis Thaliana] (GB:Q9LG11;GB:Q8LRK3;GB:Q8LRK4;GB:Q94EW2;GB:Q9SGS6); similar to histone acetyltransferase 5 (HAC5) [Arabidopsis thaliana] (TAIR:AT3G12980.1); similar to HAC1 (P300/CBP acetyltransferase-related protein 2 gene), transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G79000.1); similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) -0.304226593595443 -2.49145630988174 0.0301695147418444 1 1.83076472197178 7.29721743292781 -0.304226593595443 0.150660947121391
AT2G42620_at 7.67998354197668 7.98890927389856 7.33331518883693 7.59855568345872 8.17407825142918 8.3655404019899 7.06003280036041 7.47472782898509 8.35799527378303 8.17755953673728 8.45874198163974 8.329305302479 8.67719209824841 8.5536048884564 7.9902934884524 8.6422202518032 8.45994992512354 8.37597151416309 8.17773371002285 0.132605241445342 0.135609753846070 0.142133971078184 0.136393360236388 0.135353383380182 0.132974848420123 0.144625436595060 0.134716242569258 0.136052220555497 0.131727191248107 0.130583177474193 0.131587390111632 0.131863181542136 0.132065632566650 0.136011390375306 0.130344781674656 0.130392074612211 0.138877719821477 0.136435848547028 2 2 + 17764768 17765304 17765072.364 17763217 17765545 + gene protein_coding_gene FALSE TRUE AT2G42620.1 MAX2 (MORE AXILLARY BRANCHES 2); ubiquitin-protein ligase The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. similar to F-box family protein (FBL4) [Arabidopsis thaliana] (TAIR:AT4G15475.1); similar to RAMOSUS4 [Pisum sativum] (GB:ABD67495.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.257553055619082 2.4912448742421 0.0301808050886209 1 1.8304384771303 16.0462292571053 0.257553055619082 0.105891546344321
AT4G28470_at 8.06362043856419 8.01552842313486 7.81915453504105 7.71216978342254 7.49829938785244 7.8167305665944 7.92613203724108 7.8344666606502 8.21808386180178 8.03690526650238 7.89407075204077 8.21951957604955 7.63049060186975 8.0678705154838 8.02628076792284 7.87817560591265 7.43917958652651 7.67092051472993 7.89059660182601 0.141730336385673 0.141730336385673 0.157597046823628 0.141730336385673 0.153409606957869 0.148942640119989 0.146707162826186 0.143822857947622 0.147594797038422 0.146595210831388 0.147651340382052 0.141730336385673 0.145326357227336 0.141730336385673 0.155703929493865 0.150464385671947 0.175097692522073 0.144206502473537 0.156744903615349 4 4 - 14066911 14067400 14067189.429 14066882 14072549 - gene protein_coding_gene FALSE TRUE AT4G28470.1 AtRPN1b/RPN1B (26S proteasome regulatory subunit S2 1B); binding encoding the RPN subunits of the 26S proteasome similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A), binding [Arabidopsis thaliana] (TAIR:AT2G20580.1); similar to putative 26S proteasome regulatory subunit S2 [Oryza sativa (japonica cultivar-group)] (GB:BAD54002.1); similar to Proteasome/cyclosome, regulatory subunit [Medicago truncatula] (GB:ABE89010.1); similar to 26S proteasome regulatory complex, subunit RPN2/PSMD1 (ISS) [Ostreococcus tauri] (GB:CAL55270.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) -0.221781704156528 -2.49108386776291 0.0301894053674321 1 1.83019004800663 15.7866837624511 -0.221781704156528 0.060830507840475
AT3G07568_at 8.61371315175553 8.57453999989684 8.60237450557867 8.44494572192717 8.25938622740561 7.94378877892365 8.86140808557809 8.8945457859907 7.12325663788189 7.4910465863951 8.28434659831972 8.73882832950233 8.04593734581788 7.96084489317548 8.43699311872315 7.93957167197207 7.91523937254456 8.17534377579166 7.34323073454746 0.297164146050321 0.261650214828102 0.261650214828102 0.261650214828102 0.284788334791585 0.275283036586681 0.261650214828102 0.261650214828102 0.287955986083505 0.292731067470198 0.269625028366097 0.265171720141017 0.278317601111441 0.291505015439048 0.261650214828102 0.274933687370639 0.305307927618010 0.261650214828102 0.272887560818354 3 3|0 -|/ 2417645 2417686 2417665.333 2416249 2417796 - gene protein_coding_gene FALSE TRUE AT3G07568.1 unknown protein 0.222266102304763 2.49054976766472 0.0302179518958077 1 1.82936596675293 16.2774958443849 0.222266102304763 0.0616760156038267
AT4G16160_at 2.10127674948704 1.64541780268470 1.47689609014538 1.73314187242721 1.33341858458033 1.56003174169954 1.61017169096247 2.16805663688856 1.94120324387722 2.11386053461191 1.71396462556179 1.39411927002939 2.0811051503078 1.76406693698206 1.68015159821219 1.87173636254844 1.43636867493153 2.06882028364641 1.87279652384489 0.189031817322052 0.197141789895461 0.196500100391255 0.195415706165963 0.203688547365832 0.191290762749814 0.197139971575471 0.189031817322052 0.191418322237716 0.196201861943031 0.192384477792852 0.192849284284786 0.197086625572915 0.194669314828340 0.196135344398818 0.195902130114471 0.194876817135549 0.201315890894631 0.200619936914606 4 4|0 +|/ 9157611 9158728 9158165.667 9157530 9158948 + gene protein_coding_gene FALSE TRUE AT4G16160.1|AT4G16160.2 ATOEP16-2/ATOEP16-S; protein translocase Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco. similar to OEP16 (OUTER ENVELOPE PROTEIN 16), protein translocase [Arabidopsis thaliana] (TAIR:AT2G28900.1); similar to Mitochondrial import inner membrane translocase, subunit Tim17/22 [Medicago truncatula] (GB:ABE83193.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) -0.290010234563233 -2.48969850813572 0.0302635045512091 1 1.82805260047958 3.56717391955380 -0.290010234563233 0.138016754211632
AT4G27900_at 7.70554452573406 7.88209098944056 6.16117911762023 6.44442092354683 7.02075495121886 7.07900248493362 4.41772445647585 4.90764387438159 6.34439240951817 6.2119967657468 4.90587692663805 5.39005860299882 4.6904714887586 5.08159933378959 6.03695499147473 6.49989237193756 4.37072481822352 4.60199854125181 5.90812703676206 0.222206275780642 0.220726892844648 0.22077220363148 0.225933263244241 0.218279056281174 0.221415131136056 0.219174107563896 0.223580243917311 0.222713363098475 0.226938480983006 0.218412152450903 0.218085713202569 0.227100578523783 0.225588842897869 0.227026323382733 0.218085713202569 0.238118405937628 0.225234897186888 0.227167984002917 4 4 + 13891855 13892714 13892132.455 13890650 13893079 + gene protein_coding_gene FALSE TRUE AT4G27900.1|AT4G27900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53420.1); similar to CCT [Medicago truncatula] (GB:ABE82748.1); contains InterPro domain CCT; (InterPro:IPR010402) -0.254776597568193 -2.48966014961002 0.0302655587768944 1 1.82799342106456 12.1283131012822 -0.254776597568193 0.103081385164741
AT4G20150_at 11.1921610097043 11.2701964453187 11.2966608835768 11.3844069228261 11.0812850904201 11.2362117881535 11.0146295285906 11.2146096748648 11.0497810155195 10.8966033663703 11.101314270912 11.2998129611166 11.1150056805526 11.3135122332195 11.4034030020715 11.2334560182657 11.2902328535811 11.3378966569983 10.7825407384578 0.0669077664609206 0.0640427447699327 0.068114051757402 0.0672466540824034 0.0659817958442558 0.0680243403714163 0.0657949213615005 0.0661838692000184 0.0695064466854783 0.066163433684571 0.0665523903546897 0.0640427447699327 0.0640427447699327 0.0661130430052447 0.0648500251911696 0.0640427447699327 0.068016195599623 0.064338663454322 0.0663288303812000 4 4|0 -|/ 10889164 10889474 10889297.111 10888278 10889607 - gene protein_coding_gene FALSE TRUE AT4G20150.1 similar to unknown protein [Phytophthora infestans] (GB:AAY43427.1); similar to Os07g0498300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059709.1) 0.214464754715825 2.48933393547148 0.0302830341372397 1 1.82749014608316 22.2970056261180 0.214464754715825 0.048264333678461
AT2G18010_at 0.851788112693715 1.12134326216364 1.15626454705934 1.47536754974346 1.88622272129229 1.81282650551574 0.97700621890143 0.98087507808099 1.48698036747442 1.50191153891865 1.33958175756738 1.32595925031141 1.30828930219184 1.20200715192943 1.92599810358124 1.67726252776336 1.25578967810621 1.11096828481853 1.60979094887701 0.194326086977347 0.192524793082335 0.195334054486138 0.187577186437369 0.188840614097849 0.197731406517207 0.189063505908041 0.189055084717512 0.193468319941004 0.196375809512457 0.196242512145552 0.190533172171769 0.203260186334275 0.192816782918315 0.196946176320000 0.187577186437369 0.193243162468654 0.191800842068205 0.196519368189978 2 2 + 7840997 7841296 7841173.727 7840984 7841322 + gene protein_coding_gene FALSE TRUE AT2G18010.1 auxin-responsive family protein similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G36110.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12780.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.230127442443207 2.48928124646917 0.0302858576244320 1 1.82740886001989 2.74577489549318 0.230127442443207 0.0733981683881193
AT3G02420_at 6.99281097018192 7.8009699962418 6.86032966713996 7.46571606628154 7.52589274661586 7.05065741578729 6.90490569405622 6.74773189288875 5.36552470467182 4.45765094880119 4.7141545190057 5.55239747466303 5.43491069759903 5.84523858878594 5.0775152406165 5.32509997651551 5.66989105557921 5.38443169261029 4.50441559320727 0.260037515882976 0.251353595715080 0.276908743807602 0.256096971962598 0.253884491390358 0.258861886196441 0.248408411114945 0.260816131739027 0.268272228162515 0.248958970006143 0.256402233099749 0.252997558512596 0.250610385219788 0.253944601352588 0.258854699702670 0.254164965346489 0.2643139033173 0.258817108256591 0.254363273965122 3 3|0 -|/ 496201 497544 496973.75 495892 498841 - gene protein_coding_gene FALSE TRUE AT3G02420.1 similar to hypothetical protein [Cleome spinosa] (GB:ABD96906.1) 0.356817746196231 2.48911941464882 0.0302945314451233 1 1.82715919575557 12.2442861334318 0.356817746196231 0.195035441235421
AT3G27890_at 9.63823396627362 9.57330969956866 10.1567412455733 9.95078975215318 9.90301015166543 9.36661011088758 9.6952512171471 9.47203522925245 9.24776539064022 8.98256588188796 9.02710400914378 9.25333871716383 9.04463688039962 9.47750110038664 9.14153248426056 9.18946649730114 9.1644838658513 9.22609167477508 8.53837477846838 0.140194399538997 0.140694509369037 0.140475499334038 0.141361909671703 0.139858003520638 0.150365548436391 0.142578820668269 0.139419241344394 0.146121611584327 0.137462044170739 0.148228499236035 0.137462044170739 0.140393927983716 0.138063949289423 0.153683036223916 0.141711655935543 0.149987620317106 0.144139190271829 0.148452139873125 3 3|0 -|/ 10352053 10353130 10352440.667 10351893 10353270 - gene protein_coding_gene FALSE TRUE AT3G27890.1 NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay. Identical to NADPH:quinone oxidoreductase (EC 1.6.5.2) (NQR) [Arabidopsis Thaliana] (GB:Q9LK88;GB:Q9XFI5); similar to NAD(P)H:quinone oxidoreductase (NAD(P)H:QR) (GB:Q8H9D2); contains InterPro domain NADPH-dependent FMN reductase; (InterPro:IPR005025) 0.258598836835400 2.48887585000674 0.0303075905441654 1 1.82678344504969 18.7762083818947 0.258598836835400 0.107263401564659
AT3G62030_at 12.2617882200544 12.2923942112161 11.6572726399066 11.5736520306062 11.7658192862507 11.5729740944394 12.5744651871316 12.6488997649594 12.8565733062491 12.8628248339915 13.1491622169138 13.5380090629388 12.6859462753336 12.9177473787599 13.7909490329578 13.1141771667665 12.7442155982205 13.1487354898255 12.5434088626890 0.0551071579116107 0.0544041304673545 0.0554625392897046 0.0546805247986626 0.0575088435686763 0.0567960063648972 0.0581462505119851 0.0547910294583267 0.0583294468758196 0.0545152665141078 0.0563716049720215 0.0547886236483702 0.0539966948071974 0.0619290143867142 0.0567539913267613 0.0550386711520419 0.0598771259083805 0.0538368709531733 0.0558795154077456 3 3|0 +|/ 22985060 22986090 22985646.444 22984558 22986345 + gene protein_coding_gene FALSE TRUE AT3G62030.1 ROC4 (rotamase CyP 4); peptidyl-prolyl cis-trans isomerase nuclear-encoded chloroplast stromal cyclophilin (ROC4) Identical to Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplast precursor (EC 5.2.1.8) (PPIase CYP20-3) (Rotamase cyclophilin-4) (Cyclophilin of 20 kDa 3) (Cyclosporin A-binding protein) (CYP20-3) [Arabidopsis Thaliana] (GB:P34791;GB:Q8LBZ9;GB:Q9FPH5); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G13120.1); similar to putative peptidyl-prolyl cis-trans isomerase, chloroplast precursor [Oryza sativa (japonica cultivar-group)] (GB:BAB39968.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.210054278150824 -2.48871699799753 0.0303161106111694 1 1.82653838561929 24.9886015686661 -0.210054278150824 0.0389503367959352
AT4G39220_at 7.73175528979361 8.02327062529394 7.47321224278296 7.86533836202473 7.69492300335425 7.4287206959866 7.18284221972265 7.00664034840728 6.73052206834025 6.68340724090282 6.99949206768526 7.36249140586862 6.85133992912444 7.25491285088674 7.35883041485043 6.56124253508258 6.40055776049204 6.93443294074239 6.35408100388258 0.21855520480032 0.207646016602104 0.216443786416355 0.196646591052201 0.191820811069730 0.242237514005782 0.192403909173753 0.200363745956589 0.223034713559687 0.202344335968155 0.192124588700847 0.196322834647246 0.196554321507813 0.199904299679249 0.207477218488230 0.191820811069730 0.211793209898588 0.198530040683652 0.19981603325185 4 4|0 +|/ 18264307 18265165 18264724.3 18263611 18265765 + gene protein_coding_gene FALSE TRUE AT4G39220.1 ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) Key player of retrieval of ER membrane proteins Identical to Protein RER1A (AtRER1A) (RER1A) [Arabidopsis Thaliana] (GB:O48670); similar to ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) [Arabidopsis thaliana] (TAIR:AT2G21600.1); similar to Retrieval of early ER protein Rer1 [Medicago truncatula] (GB:ABE85945.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.252748586141222 2.48842478264811 0.0303317897766292 1 1.82608759585762 14.3282124779875 0.252748586141222 0.101004470809842
AT2G41640_at 5.20483277263103 6.1297246446831 6.45507917518634 6.45937004488589 6.25346023285185 5.9533854393828 4.85488251896095 4.92712873752351 3.9143397197128 4.1180264086065 3.07948626693019 2.64897697595746 4.00494833926688 3.39378312998713 2.73114720912831 4.3497437540311 4.95375080499592 3.70049094301531 3.84600943243246 0.278716504466214 0.287848730391799 0.286234140104407 0.284243533518525 0.273803273031429 0.284809337122042 0.280294923692567 0.286658343239758 0.276883593534352 0.281663637025412 0.278951859494423 0.288179628665703 0.27718226528012 0.28897455266536 0.286489738099117 0.276931642874434 0.281377517094043 0.285696307122332 0.273820502450267 2 2 + 17368878 17369400 17369106.909 17367569 17369613 + gene protein_coding_gene FALSE TRUE AT2G41640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57380.1); similar to glycosyltransferase [Medicago truncatula] (GB:CAI30145.1); contains InterPro domain Protein of unknown function DUF563; (InterPro:IPR007657) 0.324756981145263 2.48839092601488 0.0303336069078705 1 1.82603536715623 9.5633576698455 0.324756981145263 0.168735643831562
AT2G16600_at 12.4902817379178 12.5493307782996 12.4206305557027 12.4862815358822 12.4735566871935 12.0546555754054 12.0471155387846 11.9923665818296 11.6720225038905 11.3595739166612 11.8173203727984 11.8767853560020 11.5268659570309 11.7439661488374 11.7854782135343 11.5391661342833 11.6468638638972 11.7151905616503 10.9695392775297 0.087415475897656 0.0852120505359119 0.0865058027549697 0.0860493682001674 0.0897425928256197 0.0892934429640486 0.0870614385652752 0.0849139561500247 0.0897966205546872 0.0900286986287835 0.0873656480930607 0.085185361026761 0.0856476644467656 0.0860664272599024 0.0866766963952541 0.0857757742648339 0.0906356374220062 0.0896569109755977 0.091436554114341 2 2 + 7207947 7208419 7208140.545 7207889 7208656 + gene protein_coding_gene FALSE TRUE AT2G16600.1|AT2G16600.2 ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase|ROC3 (rotamase CyP 3) Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsis Thaliana] (GB:Q38900); similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to cyclophilin [Thellun (GB:AAR27291.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.230875052990898 2.48716286697396 0.0303995905591607 1 1.82414100434988 23.8343606115593 0.230875052990898 0.0746891639686444
AT1G53010_at -0.340932400366227 -0.419683970706876 0.117109396139783 -0.0628839864261652 0.429873314841721 0.208534804336877 -0.0516212530050802 -0.217642279002084 0.226711233825888 -0.475762856134031 -0.414275802723862 -0.286766461882536 -0.50963952527046 -0.348903306385559 0.145564890667847 -0.0197826540682932 0.489500813873869 -0.353390972142099 -0.265949761880231 0.218719705407198 0.216596267960552 0.227745328360084 0.216596267960552 0.220221058988478 0.216596267960552 0.216596267960552 0.219093745218085 0.239055864800311 0.231983956182957 0.221758141258660 0.220611692346435 0.219302963494401 0.223948475061119 0.218922077784407 0.217651150600125 0.22469742409344 0.22960097926576 0.232126537624872 1 1 + 19751535 19752002 19751745.545 19751515 19752051 + gene protein_coding_gene FALSE TRUE AT1G53010.1 zinc finger (C3HC4-type RING finger) family protein similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G05200.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25417.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.220041929407263 2.48609870899949 0.0304568813737133 1 1.82249961808134 -0.209095174425595 0.220041929407263 0.0587247544694492
AT1G55370_at 7.182057737009 7.64628774265113 6.81802782500681 6.7086904282517 8.02415165361531 7.19999363764994 8.63059379324785 8.14433183133152 8.27375793389037 8.72004493420687 8.58160197067037 8.8324747569843 8.11296793085187 8.64152583388103 9.04663665120091 8.96582867632077 8.56377236149663 8.43639119957504 8.87331549436 0.182016281823107 0.175891237405501 0.192520282897601 0.186358141620785 0.172769750079207 0.184077139855802 0.199060371284952 0.181127162254840 0.189582631813715 0.172769750079207 0.172769750079207 0.178642418403354 0.176837754944869 0.181678773475561 0.180238620045778 0.179327560093103 0.186684963662644 0.191768058065425 0.185060287189803 1 1 + 20679164 20679698 20679416.8 20678449 20680115 + gene protein_coding_gene FALSE TRUE AT1G55370.1|AT1G55370.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64770.2); similar to Os03g0748300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051267.1); similar to Os03g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049021.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64770.1); similar to Os03g0748300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051267.1); similar to Os03g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049021.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06836.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013) -0.343912377396031 -2.48513475981030 0.0305088684567820 1 1.82101291570547 16.1792781861496 -0.343912377396031 0.185027024325272
AT2G41850_at 2.04749968757658 1.41609947399492 1.69282666768639 1.38315381091777 1.54069310592836 1.54749605090412 2.00702445540565 2.070778928772 2.09865594933589 2.4307821432004 1.61555575002656 1.72103679806179 1.69343819429575 2.05507713860383 1.84142721973394 1.86060699367755 1.93458800907895 2.20886949351476 1.67361885076198 0.197693716641416 0.197236403711863 0.198631804358589 0.195850841974934 0.191706079885502 0.203952939357123 0.196955838874637 0.195715538673791 0.199636139808352 0.196243534108362 0.200811885087874 0.199778615279855 0.193225790925609 0.200511905421369 0.193643539687897 0.199444917715870 0.201037317752511 0.196315748142690 0.193543467184300 2 2|0 -|/ 17469008 17469981 17469528.556 17468733 17471239 - gene protein_coding_gene FALSE TRUE AT2G41850.1 endo-polygalacturonase, putative similar to ADPG1 (endo-polygalacturonase 1), polygalacturonase [Arabidopsis thaliana] (TAIR:AT3G57510.1); similar to endopolygalacturonase [Brassica napus] (GB:CAC05657.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.272834462860038 -2.48482879644918 0.0305253876199380 1 1.82054105101282 3.68020182134334 -0.272834462860038 0.122205810008594
AT2G14110_at 4.45053784087353 4.40861691453926 5.03713919298645 4.61299498611218 5.20097065717076 4.62894709567227 5.11895070485542 4.50253807931814 3.76218266758878 3.94500499010364 4.21897460332955 4.54473518374771 4.46172142617665 4.59298184362728 4.43941319192969 4.73534898528944 4.07329145680503 4.29501297656698 4.39667547128745 0.217985282397281 0.205094620667870 0.219405731308461 0.211047087161715 0.211190280301121 0.213350055525152 0.219795016301129 0.208752734978809 0.265709406613037 0.216300886082193 0.209815773068402 0.205094620667870 0.210382849815132 0.211470309267922 0.215096870951711 0.211994986146533 0.21228696263402 0.214019461678944 0.208819802345657 2 2|0 +|/ 5959134 5960049 5959522 5958977 5960237 + gene protein_coding_gene FALSE TRUE AT2G14110.1 similar to HAD-superfamily phosphatase subfamily IIIC; TonB box, N-terminal [Medicago truncatula] (GB:ABD28541.1); contains InterPro domain HAD-superfamily phosphatase subfamily IIIC; (InterPro:IPR010033) 0.317708006764788 2.48457092684434 0.0305393169652272 1 1.82014336665688 8.97248993465467 0.317708006764788 0.163152202787625
AT4G29550_at 1.28453960141657 1.41387521647075 1.42549676721911 1.67224066896207 1.61450485973911 1.24472002863212 1.50257935111186 1.80522294160449 1.84105435643172 2.09978183380393 1.85240430296504 1.30098045195106 1.15230499133347 1.20354786025021 1.51398659799586 1.07194067360863 1.53250923137408 1.69307958165944 1.75278444985489 0.196649867888465 0.19492693979082 0.198835750256789 0.197445954633654 0.197131294611586 0.197345638969387 0.199985935634753 0.200726666242606 0.200095931202673 0.206271824616762 0.199791056745253 0.197423624691902 0.216804403445358 0.203720432249564 0.198229297222072 0.196074279222651 0.206452446151255 0.200375344365927 0.196974366892277 4 4 + 14503106 14503705 14503462.273 14502218 14503853 + gene protein_coding_gene FALSE TRUE AT4G29550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20620.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) -0.247546515908721 -2.48364078169428 0.0305896123158625 1 1.81870897219711 3.15188130843904 -0.247546515908721 0.0957203842545577
AT2G39230_at 2.11314983777830 2.04549851307264 2.36413491913657 2.35174818938871 1.58356802098708 1.96501482378616 1.73214966769824 1.44630151651945 1.79096648883225 1.22285355137795 1.82365374693520 1.82995949378047 2.12510053337300 1.66997868344764 2.17129779548866 1.68675305600918 1.70230954087457 1.52494891216194 1.70933343379661 0.197953015120682 0.198259127059362 0.197845542423116 0.206054124457273 0.192174669771904 0.190399156098989 0.191683070064691 0.202836528297466 0.203428535476786 0.19991792163174 0.200360168270857 0.189535074468765 0.201453151715918 0.193150545632695 0.208428301732796 0.193887797641794 0.190950217643945 0.202314708268770 0.196671884927959 2 2 + 16390756 16391285 16390983.091 16388725 16391328 + gene protein_coding_gene FALSE TRUE AT2G39230.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G54980.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91021.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.237103666740352 2.48285461154719 0.0306321857504828 1 1.81749668704802 3.64576304184311 0.237103666740352 0.0833435575960454
AT1G80910_at 6.94756503859737 6.91924541909118 6.92044426632003 6.9529900610578 6.33448153615049 6.38244900782854 6.66545375354088 6.61787378071598 5.95550170573736 5.28114494844426 5.62188111213502 6.42599539781169 6.18506954399396 6.51669517307169 6.10688367335606 6.2305547120431 6.19830237367991 5.51685610855899 5.43099445243968 0.208386868430559 0.203749372170948 0.210177994146525 0.203749372170948 0.208757742053557 0.216265984517657 0.211294401512136 0.224708665421457 0.213976622804198 0.203749372170948 0.211319033317977 0.213730183244407 0.203749372170948 0.207064927828776 0.211109220565997 0.205943268510692 0.221869043484477 0.211281126921888 0.203749372170948 1 1|0 +|/ 30407527 30408334 30407922 30405626 30408568 + gene protein_coding_gene FALSE TRUE AT1G80910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16020.2); similar to Os08g0427300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061842.1); similar to myrosinase precursor [Brassica oleracea] (GB:AAL67437.1); contains domain FAMILY NOT NAMED (PTHR13056); contains domain SUBFAMILY NOT NAMED (PTHR13056:SF2) 0.2022280564052 2.48233710285612 0.0306602420046175 1 1.81669872299205 12.5456429232653 0.2022280564052 0.0138724247055285
AT4G33220_at 9.70127235976995 9.79157978239958 9.52429711105363 9.5624912257017 10.326820325345 10.2747826196496 10.3038840947458 10.4625693779582 10.8882271237250 10.6044098999295 11.7988990075001 11.5432819080767 11.3558763159563 11.5393384573908 11.2167290928353 10.9349321672606 10.8292916574171 10.7620195409213 10.5781817318061 0.0994629524080405 0.0911260284644239 0.0980167808529235 0.0985124351376636 0.0935912728800907 0.0954142728004968 0.095563457238417 0.0920363009965866 0.102395506023591 0.0947089275872072 0.0935102476508213 0.0920798768658948 0.0926211602865493 0.0932638214045724 0.0957907676257806 0.0910510004411823 0.0944533986938275 0.0931156042092158 0.0912066169303862 4 4|0 +|/ 16025406 16026077 16025842.3 16022442 16026364 + gene protein_coding_gene FALSE TRUE AT4G33220.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G43270.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.207272258326019 2.48110676020457 0.0307270448499831 1 1.81480174865614 20.9623715805312 0.207272258326019 0.0335133047789336
AT1G23060_at 4.83147331399369 4.29384776907625 3.61119268037677 3.12450955398538 3.22326081948883 3.41666388247616 2.73629478938941 2.61678351344129 3.06914215595674 3.32275548145538 3.70198029026587 3.95879573577869 4.7240671499203 4.34599868171104 3.99110855775951 5.95717070058425 4.17592939604553 4.21729655005366 4.24123573621323 0.232520687068288 0.232629825783168 0.230466302452390 0.241469472118661 0.230150975345233 0.229292414499502 0.228318606844369 0.231619861596004 0.229530853497137 0.241536911032664 0.232409618648689 0.231377603565725 0.227093441562697 0.228972000166993 0.234633689593914 0.240078245570849 0.235060689193200 0.235573697251846 0.227371344343224 1 1 - 8170935 8171460 8171139.364 8170744 8172981 - gene protein_coding_gene FALSE TRUE AT1G23060.1|AT1G23060.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70950.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE84619.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70950.1) 0.281986239581516 2.48036275261416 0.0307675106388286 1 1.81365470899394 7.44596387726512 0.281986239581516 0.131520335602890
AT2G27900_at 5.69982213703444 5.7462812338828 5.67944875063204 5.78836065957185 6.14728346578921 5.69058423716987 5.66435885910366 5.4422451883617 4.99645328338248 4.80844481575383 5.25009441100223 5.0653339165937 5.25402491708707 5.20473459331788 5.10725661647874 5.129656179745 5.06690973366604 5.44413551055795 4.87615356037619 0.130142590661929 0.128616533135237 0.133125665680398 0.133812870787881 0.132168699300923 0.132433479320448 0.131757017031811 0.131038819075747 0.138999695777174 0.132858295218054 0.133292336789946 0.129061419794918 0.12908660806786 0.130353713766789 0.134682383579096 0.128001300652511 0.135752916277124 0.133123746286393 0.134213925368023 2 2|0 +|/ 11885557 11892213 11889321.217 11884507 11893090 + gene protein_coding_gene FALSE TRUE AT2G27900.1|AT2G27900.2 similar to Os10g0546300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065215.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36336.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79598.1); contains domain Ribosomal protein S5 domain 2-like (SSF54211); contains domain no description (G3D.3.30.970.10); contains domain gb def: Hypothetical protein At2g27890:At2g27900:At2g27910 (At2g27890) (PTHR13258:SF4); contains domain FAMILY NOT NAMED (PTHR13258) 0.242413385998497 2.47931856093191 0.0308243910466131 1 1.81204498971505 10.7742741270983 0.242413385998497 0.090242476847965
AT4G26720_at 6.80540292129254 6.92376641882792 6.68531559925433 6.65990451678125 7.07245646372 6.50017967220795 6.73891616753023 7.30369652077727 6.49417049470232 6.46118441123621 6.18762107605764 6.28802274559073 6.56936320990968 6.07690875937888 6.15392587812232 6.05438554335058 6.12157622000328 6.01360926419814 6.7032066254547 0.152933492088626 0.151186294208009 0.150563848413688 0.146882140384798 0.154809624566264 0.148344926393974 0.151615247066425 0.152072331581592 0.159349377361046 0.14310133964701 0.149132677259619 0.151084188978253 0.145548479346205 0.157455582818993 0.151261521114731 0.153253244792074 0.164991333893055 0.152842876389520 0.155421170402820 4 4|0 -|/ 13470541 13471227 13470834.778 13470040 13472348 - gene protein_coding_gene FALSE TRUE AT4G26720.1 PPX1 (protein phosphatase x-1); protein serine/threonine phosphatase Encodes catalytic subunit of protein phosphatase X. Expressed at very low levels in A. thaliana flowers, leaves, stems and roots. Identical to Serine/threonine-protein phosphatase PP-X isozyme 1 (EC 3.1.3.16) (PPX1) [Arabidopsis Thaliana] (GB:P48529); similar to PPX2 (protein phosphatase x-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G55260.1); similar to hypothetical protein LOC394540 [Xenopus tropicalis] (GB:NP_988943.1); similar to Os09g0284200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062774.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.291579350418722 -2.47808777287476 0.0308915680064671 1 1.81014778824155 13.2042200004860 -0.291579350418722 0.140710917855657
AT3G23600_at 11.0836731748571 11.1541985099117 11.3758272208288 11.5462401926092 11.1839366982489 11.0092148525965 11.0036412347662 10.9613760565072 10.4392620598580 10.7450100644191 10.7130037367757 10.6301138194278 10.8165538917630 10.7080595628295 10.6701016130140 10.6749455268872 10.7945882021772 10.8668806899935 10.4331280303158 0.0849152474984585 0.0839779646597156 0.0870666684517356 0.0839779646597156 0.0857297583965716 0.0891058335102196 0.086035050761396 0.0864813015069874 0.0930859920904027 0.0839779646597156 0.0860507946158336 0.0839779646597156 0.0849575279250375 0.0938635615358458 0.0885457521746627 0.084391810640232 0.0877905065415908 0.088277899375685 0.0857848678306863 3 0|3 /|+ 8474533 8475396 8474953.111 8473782 8475895 + gene protein_coding_gene FALSE TRUE AT3G23600.1|AT3G23600.2 dienelactone hydrolase family protein|hydrolase similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23570.1); similar to 'putative endo-1,3;1,4-beta-D-glucanase' [Oryza sativa (japonica cultivar-group)] (GB:AAU10802.1); similar to Os05g0399100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055474.1); contains InterPro domain Dienelactone hydrolase; (InterPro:IPR002925) 0.211614996277245 2.47739183801019 0.0309296157834705 1 1.80907512095854 21.8014706251521 0.211614996277245 0.0445690426907583
AT2G23060_at 1.47762911039967 1.18611637667232 1.11220092024739 1.16206290959815 0.758897440070876 0.828185397582916 0.865518149534 1.19162121288736 1.45964895046137 1.39258659418640 1.34263557945938 1.11865427985639 1.57702798367236 1.26823958040631 1.43897481763811 0.895552286516859 1.58720086565033 1.06520827763145 1.75340439666746 0.196131901413322 0.198009643643344 0.202822394815021 0.194912261188176 0.199302882188219 0.196436190501090 0.204780670050385 0.194912261188176 0.196997963332762 0.198719087327487 0.200328402926421 0.194912261188176 0.204887397072298 0.197542129370339 0.194912261188176 0.197009619211724 0.19690605383796 0.204943263276082 0.20095238641006 2 2 - 9819930 9820488 9820256.818 9819851 9821804 - gene protein_coding_gene FALSE TRUE AT2G23060.1|AT2G23060.2 GCN5-related N-acetyltransferase (GNAT) family protein|N-acetyltransferase similar to HLS1 (HOOKLESS 1), N-acetyltransferase [Arabidopsis thaliana] (TAIR:AT4G37580.1); similar to putative N-acetyltransferase hookless1 [Brassica napus] (GB:CAC80824.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.231705575208173 -2.47666658062933 0.0309693154263206 1 1.80795732211900 2.48372895093691 -0.231705575208173 0.0771229755652759
AT4G23260_at 9.01983681105964 8.99508954216376 9.7046424954768 9.28022885384006 9.4446982171717 8.83774592147084 8.88991411079318 8.6867572401062 8.20630891318706 8.54221339813114 6.95018193818149 5.77276984017757 8.14426194566968 8.27007913751758 6.2920460229849 8.81229450869766 8.86970421868525 7.61219528360156 8.97805300922216 0.170501614461250 0.175804823086586 0.167480828939534 0.172955977806512 0.179914645218923 0.17716078300466 0.168835471844067 0.167480828939534 0.187786638626959 0.170259835242262 0.181089521718339 0.183615941603059 0.172411633140168 0.174728606508725 0.188601413709224 0.169696175466336 0.173204486662971 0.188055222608904 0.170934580676459 4 4 - 12167539 12168366 12167903.182 12167433 12169904 - gene protein_coding_gene FALSE TRUE AT4G23260.1 protein kinase family protein similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.283077024474085 -2.47647922237564 0.0309795792685905 1 1.80766856793386 17.1903475084034 -0.283077024474085 0.132971218433060
AT2G44065_at 6.40304269195086 6.24731348568347 6.19590228634672 6.488251611507 5.65167672659569 5.93089037896405 5.75032020202538 5.48480840622536 6.19840009933745 5.72013464357923 5.82407131241528 6.4923984596563 6.22995914288346 6.28875192201975 6.37244030249976 6.00463982279545 6.21151820588836 6.09916504056943 5.49733739627065 0.204141026728919 0.204416801824167 0.207432370070649 0.210114810659753 0.204141026728919 0.217881786294373 0.205949856898238 0.212923497620396 0.218128028132746 0.209879010450848 0.206475895196711 0.204277980265644 0.204141026728919 0.204758913158981 0.206651125607656 0.210657469438000 0.227132110261268 0.209640538222235 0.212672627106728 2 2 + 18235993 18237266 18236903.273 18235549 18238483 + gene protein_coding_gene FALSE TRUE AT2G44065.1|AT2G44065.2 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] (GB:AAK95391.1); contains InterPro domain Ribosomal protein L2, bacterial and organelle form; (InterPro:IPR005880); contains InterPro domain Ribosomal protein L2; (InterPro:IPR002171); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) 0.240193183705312 2.47629842661876 0.0309894867581667 1 1.80738993194147 12.0168550932390 0.240193183705312 0.0879309276494154
AT3G58760_at 6.4245404152761 6.0456387021135 6.41579383114442 6.07252015388179 6.59738336732301 6.06108890195822 6.13592934154576 5.40466508625161 5.15824512149294 5.52599676700705 6.28926795229613 6.07141126294806 5.32350349437736 6.02109859320905 5.87031409988656 5.67779062273555 5.95740591635085 5.42431704564931 5.63532133103553 0.216720999033163 0.203760934413033 0.213684804491608 0.201843061269577 0.206312671126706 0.205346914817647 0.205571905767927 0.205018422758309 0.202068959547937 0.204470981958636 0.201000969800644 0.206345946182046 0.220186355600648 0.211885457952107 0.205524707946647 0.204884276506106 0.21738324034181 0.205382438543388 0.206774931199798 3 3|0 +|/ 21741525 21742691 21742227.333 21739691 21742905 + gene protein_coding_gene FALSE TRUE AT3G58760.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18950.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06435.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.336768697099942 2.47614874574718 0.0309976915164843 1 1.80715925219337 11.7793164899085 0.336768697099942 0.180156678334947
AT2G44530_at 6.94901315583618 7.04924675264638 7.03679602034725 7.41038634424719 7.73665809560227 7.39051247703825 7.33284990708548 7.36622155946553 6.88650020244332 5.8748601599681 6.3437617068323 6.28998184346484 6.65483912724344 6.8086059796771 6.63579729355114 6.64346560056145 6.6651026005663 6.50790127710057 6.15144501856046 0.184390234748568 0.186121702558434 0.18734605732123 0.180956041396515 0.184644791923851 0.178121258007705 0.178205379944433 0.188262673207984 0.180444277362000 0.179578922427329 0.181325482828837 0.178699294233497 0.192734500827083 0.178121258007705 0.188862393816479 0.178121258007705 0.189763194285260 0.183533634312259 0.185953718553979 2 2|0 +|/ 18392011 18392847 18392480 18390591 18393219 + gene protein_coding_gene FALSE TRUE AT2G44530.1|AT2G44530.2 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative Identical to Ribose-phosphate pyrophosphokinase 5 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 5) (PRS5) [Arabidopsis Thaliana] (GB:O64888;GB:Q8L7T8); similar to ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) [Arabidopsis thaliana] (TAIR:AT1G32380.1); similar to ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) [Arabidopsis thaliana] (TAIR:AT2G35390.2); similar to Ribose-phosphate pyrophosphokinase 1 (Phosphoribosyl pyrophosphate synthetase 1) (GB:Q9XG98); contains InterPro domain Phosphoribosyl pyrophosphate synthetase; (InterPro:IPR000842); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946)|Identical to Ribose-phosphate pyrophosphokinase 5 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 5) (PRS5) [Arabidopsis Thaliana] (GB:O64888;GB:Q8L7T8); similar to ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) [Arabidopsis thaliana] (TAIR:AT1G32380.1); similar to Ribose-phosphate pyrophosphokinase 1 (Phosphoribosyl pyrophosphate synthetase 1) (GB:Q9XG98); contains InterPro domain Phosphoribosyl pyrophosphate synthetase; (InterPro:IPR000842); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) 0.241834429425515 2.47536772291116 0.0310405377582667 1 1.80595562912691 13.7204357335079 0.241834429425515 0.0900128758940605
AT2G36130_at 7.670691814147 7.671169587558 7.03456794922316 7.03652366719585 7.78797748248383 7.89231881928978 7.25950372539973 7.46114017726287 7.68737556876093 7.67247896672795 7.36039883679928 7.28925881951403 7.23346262476349 7.32961867758389 7.36964507333682 7.36122081621348 7.23258211305898 7.19361150277198 7.54974300572684 0.170610213484006 0.156962177403735 0.178791189859968 0.162498623983841 0.162271969699384 0.171397229915771 0.156962177403735 0.162867784268441 0.165248628702609 0.16238166107358 0.162385707321039 0.160795948777695 0.165905491107355 0.168120597776285 0.164485656835624 0.156962177403735 0.172144178120066 0.162125121570272 0.159146482500935 2 2|0 +|/ 15173951 15175156 15174460.25 15173852 15175569 + gene protein_coding_gene FALSE TRUE AT2G36130.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G44600.1); similar to peptidyl-prolyl cis-trans isomerase [Brassica rapa] (GB:ABK78697.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.209043526138535 -2.47504104926972 0.0310584759635818 1 1.80545221971710 14.9431153136919 -0.209043526138535 0.0392908128921337
AT4G15330_at 1.82065077793293 1.56057415699071 2.40786673956991 1.96938725336455 1.53171791450080 2.06137968533428 1.54430717680724 1.61304598153805 1.49391506465682 1.55169573412762 1.55276936972364 1.34920682812168 1.34985803263301 1.98441367059674 2.04283516612968 1.42853518247715 2.18939854614921 2.05368191913589 1.59504504236416 0.178678506738590 0.188503766253046 0.178438024462022 0.181251785114283 0.178438024462022 0.180474654715614 0.178438024462022 0.182080821612255 0.181355398438439 0.188206893814280 0.180073347568133 0.181100813674952 0.186286929359569 0.180094679508396 0.180991716232755 0.187304640782569 0.181784311479040 0.182127334030481 0.18085691808702 4 4 - 8751592 8752090 8751843 8751391 8753157 - gene protein_coding_gene FALSE TRUE AT4G15330.1 CYP705A1 (cytochrome P450, family 705, subfamily A, polypeptide 1); oxygen binding a member of the cytochrome P450 family similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20100.1); similar to CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20130.1); similar to Cytochrome P450 93A1 (GB:Q42798); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.277447716931579 2.47485063152678 0.0310689368010893 1 1.80515878903743 3.45897752063168 0.277447716931579 0.127776083019282
AT4G11830_at 4.74658812121338 5.11545033010571 5.00912010527592 4.82912318981098 5.31476031931116 5.05440502853599 4.96270184571485 4.57020359202981 4.64073358076606 4.89242812472828 5.21368712035669 5.16788851322278 5.01489838488829 5.27738123254846 4.7810700768923 5.78901350787875 4.47711207673446 5.20853295528208 4.87756360210197 0.161361900045192 0.158842049027464 0.163059521973555 0.160515987472684 0.165773044087688 0.165372816277234 0.159080838409648 0.160788125888431 0.163946120287511 0.163116459746045 0.160620995914491 0.168863616166833 0.161085566606954 0.158670092482171 0.164966519037013 0.159813980331761 0.162610404768709 0.159522960103977 0.165821603051611 4 4|0 -|/ 7115989 7121031 7118075.474 7115730 7121239 - gene protein_coding_gene FALSE TRUE AT4G11830.1|AT4G11830.2 phospholipase D gamma 2 / PLD gamma 2 (PLDGAMMA2) Encodes one of three phospholipase D enzymes of the gamma class. Identical to Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD gamma 2) (PLDGAMMA2) [Arabidopsis Thaliana] (GB:Q9T051;GB:Q9XH77); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D [Gossypium hirsutum] (GB:AAD43343.1); similar to phospholipase PLDb2 [Lycopersicon esculentum] (GB:AAG45488.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973)|similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D [Gossypium hirsutum] (GB:AAD43343.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); similar to phospholipase PLDb1 [Lycopersicon esculentum] (GB:AAG45487.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.257869534705471 2.47415257018778 0.0311073151450947 1 1.80408312663105 9.91018060950351 0.257869534705471 0.108113880883262
AT3G17390_at 10.6850210481234 10.8549519906055 10.2836580126402 10.2296739245871 10.5137503921439 10.4523510911579 11.4280732864788 11.6124022581400 11.5222219898621 11.5521464656887 12.2034894111493 12.0901174068823 11.6246057963247 11.8004431285837 11.9891478296267 11.6606064878431 10.9845888443457 11.8348307405368 11.1913662664901 0.081174939440528 0.0804711178493145 0.0857400392050452 0.0896843481802687 0.0852941094393353 0.0817724377411975 0.0868297311211922 0.0850012361310476 0.0882629204631512 0.0819850078655934 0.0839438595425124 0.0824146384859944 0.0829602063823664 0.088898956836054 0.0846203850440582 0.0798561646274614 0.086526814168268 0.0798561646274614 0.0829936050039713 3 3 - 5952496 5952941 5952711.909 5952193 5954088 - gene protein_coding_gene FALSE TRUE AT3G17390.1 MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S-adenosylmethionine synthetase 2) [Arabidopsis thaliana] (TAIR:AT4G01850.2); similar to MAT3 (METHIONINE ADENOSYLTRANSFERASE 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT2G36880.1); similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2) (AdoMet synthetase 2) (GB:Q96552); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAG17666.1); similar to S-adenosylmethionine synthetase [Litchi chinensis] (GB:AAP13994.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) -0.211843329528368 -2.47408180810509 0.0311112081223734 1 1.80397409075611 22.3551803903222 -0.211843329528368 0.0456345676528344
AT1G19410_at 1.02993628637413 1.4434037122226 1.11260629491732 1.27156971774326 1.33758836248867 0.855240820275883 1.45094564575348 1.66753049972550 1.64487118695802 1.87432473899195 1.31325726657828 1.32539395790913 1.67051171952467 1.67821597518460 1.35843828599399 1.48267482773714 1.26313800178598 1.62546437210764 1.72625040921086 0.170641796446679 0.164197022629208 0.162865645333617 0.166411677984226 0.167981391677557 0.162865645333617 0.165429391112253 0.164365995055288 0.168857778484076 0.167184985492170 0.162865645333617 0.165087524142317 0.167360524840389 0.164843632964414 0.16673747057298 0.167526422256619 0.166189473790376 0.162865645333617 0.168446029697848 1 1 - 6714492 6715546 6715039.455 6714483 6716430 - gene protein_coding_gene FALSE TRUE AT1G19410.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G62970.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.268774024015123 -2.47382974858132 0.0311250790520722 1 1.80358570239863 2.87766212372408 -0.268774024015123 0.119369192414966
AT1G08970_at 9.29357477491337 9.2027067752683 9.21656187169521 9.31155525554104 9.75547562343809 9.60861228371735 8.99816948707849 9.20322840716849 8.65045157174567 8.41432240967137 8.46431996330765 8.43112919182595 8.81312444362755 8.63806724446339 8.45926829310318 8.74128184610172 8.70372820616598 8.46919265086945 8.31947192232058 0.128373381063135 0.122937952531412 0.123227345808912 0.118930046699190 0.128373544864659 0.129908846429163 0.125347209220012 0.119590383580808 0.125071087990030 0.123869330677057 0.126724307138633 0.122115847867419 0.124089227976256 0.118930046699190 0.130848838763201 0.121900548081273 0.130755199262579 0.122213796224022 0.126647067315451 1 1 + 2883432 2883798 2883607.818 2882527 2884340 + gene protein_coding_gene FALSE TRUE AT1G08970.1|AT1G08970.2|AT1G08970.3|AT1G08970.4 HAP5C (HEME ACTIVATED PROTEIN 5C); DNA binding / transcription factor|HAP5C (HEME ACTIVATED PROTEIN 5C); DNA binding heme activated protein (HAP5c) Identical to Nuclear transcription factor Y subunit C-9 (AtNF-YC-9) (Transcriptional activator HAP5C) (NFYC9) [Arabidopsis Thaliana] (GB:Q8L4B2;GB:O04033;GB:Q9SNZ0); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.3); similar to At1g08970/F7G19_16 [Medicago truncatula] (GB:ABD32395.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.213615038088998 2.47376208331782 0.0311288037260334 1 1.80348144108153 17.8494502004420 0.213615038088998 0.0492214247251643
AT3G52450_at 1.69937619339256 2.10027284770898 1.31050817144246 1.68771782482197 1.75198676551609 1.5876565839983 1.64892943386559 1.63768480469138 2.26107460188321 1.86768714848550 1.89573315260301 1.51855373791561 1.48385450144362 1.62598880345525 1.06614388293264 1.90790901928283 1.86171575960836 1.64943793700304 1.68751330247272 0.213577172792072 0.226756754042437 0.209190036478170 0.215453911944653 0.206643069302596 0.211305489120460 0.206920298309034 0.214588322046543 0.226740183404514 0.222134457190683 0.214136811433367 0.211587823433191 0.220987067629149 0.220207524013965 0.214311131887027 0.214269975605425 0.220811641456937 0.213750702274550 0.222530315788873 3 3 - 19451921 19452492 19452149.636 19451717 19453361 - gene protein_coding_gene FALSE TRUE AT3G52450.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35930.1); similar to U-box protein [Capsicum annuum] (GB:ABA59556.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.249844867568263 -2.47375957950532 0.0311289415582151 1 1.80347758311914 3.46047930329351 -0.249844867568263 0.0994328337123863
AT3G27050_at 8.50482496636973 9.0045026250273 8.39856789634762 8.45036029048333 9.2198398033254 8.40506594082604 10.0033842635788 9.6426072975647 9.48148590999866 9.8208139998046 9.9922513374062 9.89385792815996 9.42901218403064 9.87442137368296 9.48907470569031 9.9723686512006 9.10455583046693 9.24741281976905 9.55871416850293 0.159091898372478 0.156102958266975 0.159256944774438 0.163238762854551 0.153508046115802 0.163520251906468 0.154559029964988 0.150047955036560 0.160885704409572 0.153997833851212 0.154210127136348 0.154987055253471 0.153952375643480 0.153806055809067 0.16338924060157 0.149438438824475 0.159767320648737 0.157251341725034 0.155728090545767 3 3 - 9979528 9980804 9980108.727 9979332 9980936 - gene protein_coding_gene FALSE TRUE AT3G27050.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93800.1) -0.332669988845381 -2.47368813827914 0.0311328745721682 1 1.80336750429632 18.5764978253918 -0.332669988845381 0.177022037161044
AT3G62820_at 8.17996307823943 8.62280113327497 7.78812087744183 8.04281411748034 8.66693108318365 8.4581040139018 7.91221854330053 8.11889280567827 7.78513906973595 7.2162939538033 8.17605747963323 8.77179578804281 7.69305403755416 7.13632304842907 8.47441039673766 8.0518934889359 7.69711113224241 7.71049423892511 7.46955592309478 0.175431783561535 0.174324960972625 0.172679782901634 0.180655974826518 0.176758772820294 0.177443229060053 0.177046215720265 0.170602829131800 0.174264836750026 0.188185237435861 0.178464146366311 0.176363455344023 0.170602829131800 0.184042605304664 0.172760629242190 0.173444312997502 0.184852245976612 0.173787557752755 0.179550676490749 3 3 + 23240770 23241303 23241080.182 23240724 23241476 + gene protein_coding_gene FALSE TRUE AT3G62820.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G47670.1); similar to Pectinesterase inhibitor [Medicago truncatula] (GB:ABE84986.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.252043217656568 2.47273179477003 0.0311855704173826 1 1.80189400284604 15.9508417566579 0.252043217656568 0.101984445667165
AT1G73720_at 6.42198842447654 7.35407382296125 6.34653893357561 6.74361061002146 6.9885334744814 6.82413566254266 6.73522199198795 7.24509767567846 6.75402036621845 6.98969277067714 6.2662327498543 6.59364300920758 6.15332452803348 6.24265696226092 6.19777335956535 6.34950918060223 6.59265045641797 6.29150298661796 6.77494771848241 0.235158842994156 0.230946868745096 0.228253658491359 0.227764020616159 0.245256749631533 0.233764462078095 0.234957078134104 0.227764020616159 0.240238249697621 0.227764020616159 0.230684057517117 0.231476669151751 0.233053563938338 0.235356547190283 0.229984644361977 0.227764020616159 0.233004770636140 0.232686075833554 0.232292476689073 1 1|0 +|/ 27731873 27733330 27732609.333 27728663 27733592 + gene protein_coding_gene FALSE TRUE AT1G73720.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to WD-40 repeat protein [Lycopersicon esculentum] (GB:AAK52092.1); similar to Smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [Homo sapiens] (GB:AAI10655.1); similar to PREDICTED: similar to smu-1 suppressor of mec-8 and unc-52 homolog isoform 1 [Canis familiaris] (GB:XP_531971.2); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) -0.358516386505062 -2.47246705570800 0.0312001733070702 1 1.80148612228884 13.4201327107303 -0.358516386505062 0.198330683432510
AT1G26230_at 6.36874500894677 6.22896174957859 5.68415945291873 4.9926281539036 6.3681470613446 5.83561385539988 6.99482214131667 6.53397729940458 5.35784345288813 6.26417053771577 5.45947195587 6.45312015755079 5.64555803454853 5.82015933048867 6.61800355144667 6.84313334567602 6.66657076977892 5.37987037098803 6.23768375378501 0.225997126797121 0.222562852103823 0.221147288854046 0.22560908744328 0.218955170711871 0.223423712430041 0.220978266267925 0.228109410532254 0.224583849970380 0.231945011014088 0.224668679086560 0.223417823118056 0.223003217955356 0.218955170711871 0.225355242178676 0.22110435231939 0.221968893012726 0.228082458716238 0.220988172208744 1 0|1 /|- 9072375 9073043 9072589.6 9072375 9075266 - gene protein_coding_gene FALSE TRUE AT1G26230.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G55490.2); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P08927); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P21241); similar to chaperonin-60 beta subunit (GB:AAB39827.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.32699303041973 -2.47140215393021 0.0312589803659239 1 1.79984552918139 12.1578661008549 -0.32699303041973 0.172510805292473
AT1G51980_at 9.28571432592229 9.28648312309292 9.28410467857623 9.30184719884991 8.91770826720878 8.80395100996736 9.43816272589085 9.33642391878215 8.06427963256528 8.67129614741735 9.21034943048188 9.21845083628998 9.1921934860712 9.02633600406574 9.32351855335651 9.05368083445223 8.90189879590682 8.462495670788 8.40587526945523 0.127059395455774 0.127474716824436 0.125249975015222 0.124580501361470 0.121735688866907 0.140257587976587 0.128526127680934 0.129650388720449 0.144320349790279 0.134341952054541 0.127108753123796 0.124155811480393 0.126222630710133 0.124920847959868 0.12121704915395 0.12121704915395 0.133868413189287 0.140134048689688 0.135187383940271 1 1|0 -|/ 19327384 19328809 19328254.375 19327051 19330585 - gene protein_coding_gene FALSE TRUE AT1G51980.1|AT1G51980.2 mitochondrial processing peptidase alpha subunit, putative Identical to Probable mitochondrial-processing peptidase alpha subunit 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) [Arabidopsis Thaliana] (GB:Q9ZU25;GB:Q8L9K3); similar to MPPALPHA (mitochondrial processing peptidase alpha subunit), metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT3G16480.1); similar to Mitochondrial-processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) (Ubiquinol-cytochrome-c reductase subunit II) (GB:P29677); similar to Os01g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044193.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765)|Identical to Probable mitochondrial-processing peptidase alpha subunit 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) [Arabidopsis Thaliana] (GB:Q9ZU25;GB:Q8L9K3); similar to MPPALPHA (mitochondrial processing peptidase alpha subunit), metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT3G16480.1); similar to Os01g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044193.1); similar to mitochondrial processing peptidase [Solanum tuberosum] (GB:CAA56520.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.204169266754559 2.47119870300939 0.0312702278541558 1 1.79953210795672 17.9213489733226 0.204169266754559 0.0265890404172967
AT4G03410_at 8.29959083192518 8.1484400517677 8.61865198346166 8.2532986433875 9.11250986894152 8.50455244470944 8.56500965835268 8.2480251408753 7.27420713144954 7.53970036768306 7.75544681944121 7.371874778222 8.18413955296711 7.90599107835927 6.7025190265246 8.25787519567884 7.79804514804557 7.33804176276205 7.37949955385475 0.187338420385593 0.187338420385593 0.188213865974095 0.188388256351069 0.189462436474386 0.195950485137118 0.188014061599718 0.192578882187765 0.217187000492715 0.207809966721613 0.189851935920527 0.190638231804779 0.187338420385593 0.196560393621968 0.209756764506369 0.187849688773972 0.212427705235732 0.221756079425486 0.187338420385593 4 4|0 +|/ 1502163 1503083 1502625.75 1501167 1503560 + gene protein_coding_gene FALSE TRUE AT4G03410.1|AT4G03410.2 peroxisomal membrane protein-related similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT1G52870.2); similar to peroxisomal membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD34004.1); similar to Os03g0583800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050563.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.286713066824558 2.47107300061883 0.0312771791049048 1 1.79933846290137 15.9997818385506 0.286713066824558 0.136967167480928
AT2G17980_at 7.66432753890979 7.69070811511898 7.50844932493707 7.57290971053389 7.31579531072906 7.42024183155142 6.8695954043076 7.35202025925315 7.46980693843046 7.21306557620464 7.62733087366826 8.00416714389842 7.69615570991267 7.90919776309211 7.90570841120897 7.82298395781334 7.71557680044546 7.4707538847215 7.37500827851919 0.144005581742529 0.142569003760863 0.153139440997347 0.145232179016349 0.138619365763609 0.149822634133866 0.145876466733190 0.146016535994922 0.154033885072767 0.141348977058680 0.142597743649358 0.144695083478803 0.146027259911360 0.149032504536850 0.139512769537544 0.142081134772103 0.140742492312471 0.144448321070661 0.140449455442881 2 2 + 7832953 7833460 7833216.182 7831248 7833679 + gene protein_coding_gene FALSE TRUE AT2G17980.1 ATSLY1; protein transporter member of SLY1 Gene Family Identical to SEC1-family transport protein SLY1 (AtSLY1) (SLY1) [Arabidopsis Thaliana] (GB:Q9SL48); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31740.1); similar to Vesicle trafficking protein Sly1 (Sec1 family) (ISS) [Ostreococcus tauri] (GB:CAL52374.1); similar to Os03g0620800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050677.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.238271801042071 2.47052508949650 0.0313074958344389 1 1.79849442689771 14.9850615614909 0.238271801042071 0.0862662992400417
AT3G01010_at 1.38158255863566 1.54721893649135 1.63170074020033 1.78824337634429 1.49190493863629 1.71468369888422 1.52769304296136 1.67964569331336 2.12010463590737 1.75780933739973 2.12003275103095 1.96396185615158 1.74035721064639 1.95429868426374 2.44632267670872 1.94180004825412 2.04782349204357 1.60493251007196 1.10151552801024 0.186817742761454 0.181005605149939 0.179062108774062 0.185077646821945 0.184346716638277 0.179062108774062 0.185865336471610 0.179062108774062 0.19409390733595 0.188241761504194 0.180694677915901 0.181104440697680 0.180533408347108 0.190255539568051 0.187888214003762 0.181344551900453 0.183032640562332 0.184169735554231 0.182348945354766 3 3 + 4383 4788 4583.364 4349 4825 + gene protein_coding_gene FALSE TRUE AT3G01010.1 UDP-glucose/GDP-mannose dehydrogenase family protein similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G15490.1); similar to UDP-glucose dehydrogenase [Cinnamomum osmophloeum] (GB:AAR84297.1); contains InterPro domain UDP-glucose/GDP-mannose dehydrogenase; (InterPro:IPR001732) 0.22011472526989 2.47047113759227 0.0313104826256218 1 1.79841131812128 3.41395961689277 0.22011472526989 0.061101038919762
AT4G03520_at 11.7264232415704 11.7953553012104 11.6526001999636 11.7531968879218 11.7962473926820 11.812621422727 11.6461943516122 11.8445949301220 11.2125579591556 11.5689996396463 11.9183607169494 11.7049912067141 11.7863294408496 11.6904416757398 11.7663378795228 11.9244478493543 11.9652089379156 11.8745323425005 11.4517827874891 0.0949314339410353 0.0947023441077396 0.0990305945472808 0.094494943810788 0.0955763448578932 0.097003565279159 0.0928369613029565 0.0991168771468961 0.103134996946226 0.102053208941003 0.098331313416806 0.0926082325194386 0.0941138754844098 0.10177339130025 0.096707405801271 0.095309387132364 0.0998216461246008 0.0984536973427395 0.100221816152171 4 4 - 1562587 1563981 1563254.909 1562357 1564190 - gene protein_coding_gene FALSE TRUE AT4G03520.1 ATHM2 (Arabidopsis thioredoxin M-type 2); thiol-disulfide exchange intermediate chloroplast localized thioredoxin, similar to prokaryotic types. Identical to Thioredoxin M-type 2, chloroplast precursor (TRX-M2) [Arabidopsis Thaliana] (GB:Q9SEU8;GB:Q9ZT79); similar to ATHM1 (Arabidopsis thioredoxin M-type 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G03680.1); similar to Thioredoxin M-type, chloroplast precursor (TRX-M) (GB:Q9XGS0); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) 0.209121156895589 2.47033604220135 0.0313179627627476 1 1.79820321563650 23.3733765751213 0.209121156895589 0.0404008411952175
AT2G46040_at 3.00084648802445 3.22371246545627 3.17424412595356 3.17383809560526 3.09664018011431 3.18886741064098 3.31734318231425 3.39202777944524 4.22021682157134 3.74332540614714 3.82832851434301 3.34362574225749 3.72051652341721 3.80960267288969 3.70403407839739 3.10595384492580 3.52630053597809 3.64203831946757 3.82981878162014 0.186302816680554 0.186951565334986 0.187060307073956 0.188055119392304 0.189999668941941 0.193641376328159 0.188708775361569 0.192670745555957 0.192575651328889 0.190713494004907 0.183113209589666 0.193454097332744 0.190664679443105 0.186720097515518 0.187359602386344 0.183113209589666 0.198208004237669 0.193774258909166 0.186807416123280 2 2 - 18942788 18943314 18943010.182 18942374 18945520 - gene protein_coding_gene FALSE TRUE AT2G46040.1 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G11400.1); similar to ELM2; AT-rich interaction re (GB:ABD28708.1); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain ELM2; (InterPro:IPR000949) -0.210577666609101 -2.47005165312488 0.0313337148952955 1 1.79776514701368 6.95402514864716 -0.210577666609101 0.0436952093921993
AT1G50290_at 3.30603209915981 4.0157930961489 4.23545082021498 4.03174044109123 5.85624671652084 4.78209960426021 5.08977221003187 4.61714757932433 3.82342680820741 4.49681229119781 4.55368238283913 5.2442810000876 4.61641784727406 4.84391781635586 3.78651639526441 5.38045305990948 4.96771174759117 4.6572921263258 4.88868976176789 0.268579996816093 0.250674764262684 0.253014582368804 0.258201925446187 0.257888220216974 0.261502001536177 0.253181900565835 0.250264330409137 0.249839775834655 0.248276177180597 0.248372618596397 0.247376072793578 0.247376072793578 0.254932542100738 0.253911487120641 0.247376072793578 0.264227967548559 0.249701497440398 0.257162234790018 1 1 - 18631535 18631860 18631671 18631227 18632102 - gene protein_coding_gene FALSE TRUE AT1G50290.1 unknown protein 0.411252954626911 2.46962897763616 0.0313571409331517 1 1.7971140830549 9.07141548785084 0.411252954626911 0.239942937525206
AT3G08880_at 1.86019638157449 1.87711821453737 2.08981059864167 2.61393231022923 1.97608840020582 2.0971395532389 1.97212717544002 1.85462375907484 1.65450556248097 2.11160192366873 2.5196593164124 2.34194830686155 1.91160262519524 1.83787939747509 2.18923577115327 1.80819598631315 1.67632566050104 2.02942963229329 1.78724797786855 0.162959062316886 0.185183745522095 0.176375039265442 0.172588443651255 0.161906572803805 0.169193755974345 0.165425686968595 0.165741466704797 0.179126593279100 0.164529911923880 0.1708601440706 0.172805787203454 0.1683753220979 0.173994961202487 0.165138594032304 0.171862615019020 0.162935693753048 0.166353364554322 0.170155312405279 3 3 + 2703180 2703557 2703348.182 2702979 2704371 + gene protein_coding_gene FALSE TRUE AT3G08880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01570.1); similar to Os04g0445400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052902.1) 0.245696215970885 2.46849010883507 0.0314203459367571 1 1.79535995087410 3.98783108663365 0.245696215970885 0.095329459450296
AT1G62810_at 8.9143008228036 9.33975471268728 9.42499152789893 9.55118622445133 9.87568242893021 9.51463900256486 7.64856720197436 8.38525539186393 6.55640148557145 7.16987824416139 6.35135751801321 5.55767302237676 6.76525800079464 7.01236040142008 5.19699611064284 6.8077372963041 7.04275197411686 6.34996306391311 6.60749029451199 0.244493402241875 0.250444392263953 0.251220263708035 0.252389504103791 0.254097437595484 0.256148233146876 0.245091534711192 0.244493402241875 0.248544579884590 0.244493402241875 0.245355414936756 0.250740214953561 0.244493402241875 0.250645365754395 0.252438712102647 0.244493402241875 0.250045867473303 0.256944479909572 0.249214885965613 1 1|0 -|/ 23261920 23262577 23262204.1 23261391 23265631 - gene protein_coding_gene FALSE TRUE AT1G62810.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); similar to copper-containing amine oxidase [Solanum lycopersicum] (GB:CAI39243.1); similar to Os04g0269600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052338.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) 0.3136220478309 2.46831670968782 0.0314299801668415 1 1.79509288891087 15.6635149215781 0.3136220478309 0.161414455261302
AT1G28510_at 7.55719533236911 7.56329425576913 7.67896681278055 7.48200351638633 7.02432467514442 7.07473033384418 7.76278345141952 7.4053193199682 7.04883642169336 6.32916857176459 6.36296473901869 6.59456303180119 6.14115654218154 6.13067768979346 6.5880203670423 6.2484103165333 6.50915587144326 6.48661255172612 6.35788395978541 0.190933947888021 0.190060778731163 0.187058940801000 0.189388460121945 0.190574741321697 0.190654929646122 0.191007515841898 0.19099803620984 0.189702135523910 0.201099083507039 0.189674392540760 0.187673508189828 0.189788022164579 0.189577362254779 0.188777331020837 0.188180255347135 0.187987729191353 0.186086702349501 0.191977745784648 1 1|0 +|/ 10024033 10025873 10024612.6 10023862 10026281 + gene protein_coding_gene FALSE TRUE AT1G28510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58150.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81625.1); similar to Os01g0242300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042554.1); contains InterPro domain Optic atrophy 3; (InterPro:IPR010754) -0.226538133865629 -2.46757725476568 0.0314710974359967 1 1.79395405502666 13.9242396070970 -0.226538133865629 0.0711743080403316
AT2G04660_at 3.80359551552249 5.11589257457929 3.90512850811736 3.78111166075521 4.19909421772649 4.05336889519413 4.29557869387394 4.30512064932335 4.01426626013272 4.09934515075654 3.79567455342675 3.47895378701934 3.61620538406849 3.96095515084663 3.29668223858794 4.25031751327802 3.87721280349556 3.39600441960109 4.2112951063908 0.217370174453376 0.215230560268627 0.222340891487121 0.221028119228917 0.217966301352398 0.224732771118685 0.224005927103114 0.221148329901843 0.223679430784853 0.215263797954962 0.21905827484849 0.215230560268627 0.2184955883134 0.225728943334982 0.218064527079412 0.215230560268627 0.215339340875838 0.229160296453466 0.221528661702392 2 2|0 +|/ 1628023 1628965 1628557.667 1624738 1629159 + gene protein_coding_gene FALSE TRUE AT2G04660.1 APC2 (anaphase-promoting complex/cyclosome 2); ubiquitin-protein ligase a highly conserved ubiquitin-protein ligase involved in cell cycle regulation similar to CUL4 (CULLIN4), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G46210.1); similar to H0805A05.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67481.1); similar to Putative anaphase promoting complex protein, identical [Solanum demissum] (GB:AAT66764.1); similar to Cullin; N-6 Adenine-specific DNA methylase [Medicago truncatula] (GB:ABE85808.1); contains InterPro domain Cullin; (InterPro:IPR001373); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.397336239506338 -2.46753296785117 0.0314735616701806 1 1.79388585100162 8.09101279124511 -0.397336239506338 0.229506675897293
AT4G02890_at 10.9499540617959 11.3868603488572 11.5137324329481 11.7216581220451 11.6758616264107 11.4205245319995 11.8351053964118 12.0107831585479 11.6078887827803 11.6756122825279 12.3082805997974 12.1572632378617 11.9766247275552 12.0983300084986 12.0053631202306 12.3198098898220 11.9298927032689 12.0249049756374 11.6409268717702 0.122603732756438 0.108728361536685 0.110732549126144 0.105817872383764 0.108331279629877 0.113780622096711 0.114467852414095 0.110601927387993 0.116701052309136 0.112236164596343 0.105817872383764 0.105817872383764 0.105817872383764 0.108027343459027 0.107040958754965 0.106389433921257 0.120264343232951 0.111270623734626 0.108385708253869 4 4 - 1278758 1279179 1278906 1278530 1280029 - gene protein_coding_gene FALSE TRUE AT4G02890.1|AT4G02890.2|AT4G02890.3 UBQ14 (ubiquitin 14); protein binding Polyubiquitin gene containing 4 ubiquitin repeats. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ10 (POLYUBIQUITIN 10) [Arabidopsis thaliana] (TAIR:AT4G05320.6); similar to ubiquitin-like protein [Phaseolus vulgaris] (GB:AAB36545.1); similar to pentameric polyubiquitin (GB:AAA34124.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626)|Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ11 (UBIQUITIN 11), protein binding [Arabidopsis thaliana] (TAIR:AT4G05050.2); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to ubiquitin [Antirrhinum majus] (GB:CAA48140.1); similar to ubiquitin-like protein [Phaseolus vulgaris] (GB:AAB36545.1); similar to pentameric polyubiquitin (GB:AAA34124.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.249175557877744 2.46707430696315 0.0314990937943112 1 1.7931795054177 23.4363272783071 0.249175557877744 0.0994394300193066
AT1G47470_at 1.21614308480581 1.13247713238799 1.33439108025019 1.54371784402998 1.38603916589332 1.42370934983213 1.20220221343356 1.35065984204513 0.691786674048425 1.33097103841379 1.19327548481062 1.25933203054952 1.54522592060470 1.11799897971857 1.55153768225043 1.45979299959891 1.30478870612640 1.45964411787780 1.37950054055615 0.174474445402319 0.181367381878118 0.175451507256294 0.175434733455379 0.179166557002049 0.175681150672392 0.187485474736025 0.179223068202878 0.185140908025903 0.178704596783864 0.175646957239548 0.181390402780443 0.182767695471641 0.181305030236474 0.182267608706973 0.1801613989924 0.181186759743887 0.177093852117719 0.183404486090478 1 1 - 17417127 17417468 17417321.636 17417051 17417572 - gene protein_coding_gene FALSE TRUE AT1G47470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45190.1); contains InterPro domain Protein of unknown function DUF784, Arabidopsis thaliana; (InterPro:IPR008502) 0.211978598842974 2.46690072100193 0.0315087620249422 1 1.79291218708940 2.57143525135055 0.211978598842974 0.0471637924058104
AT1G26660_at 4.27850760443918 4.39229536292039 4.32783761353099 4.3486154030877 4.5795921247157 4.45698731515204 4.1761081834083 3.90010221766552 3.75063069796435 3.93792769799499 2.96361877923594 2.89465162238613 3.02991205137368 3.19988361403046 3.1253876934031 3.28614761761924 3.24412003965071 3.43245117769871 3.77721586117719 0.255073797886561 0.2433787014375 0.248151924811257 0.242274628932308 0.256395412078017 0.256475612487793 0.242274628932308 0.246127939915964 0.245585505882856 0.256071988568379 0.247633221184397 0.258905176136087 0.261677159848863 0.248914858731035 0.253095166359070 0.257034815639493 0.250916522787495 0.259265287959625 0.242381571320909 1 1|0 +|/ 9212892 9213716 9213318.429 9211727 9213961 + gene protein_coding_gene FALSE TRUE AT1G26660.1 c-myc binding protein, putative / prefoldin, putative similar to hypothetical protein DDBDRAFT_0218702 [Dictyostelium discoideum AX4] (GB:XP_638247.1); similar to Os07g0595800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060168.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin alpha-like; (InterPro:IPR004127) -0.216699202970417 -2.46670778634629 0.031519511323746 1 1.79261507674325 7.79197889151677 -0.216699202970417 0.055966692433496
AT4G01100_at 8.75887299644924 8.74774617235767 8.98074223675619 8.92636394234426 9.29729083171297 9.05265370512582 9.69909156122134 9.5616762943149 8.2545587291403 8.77542962203289 9.31343868498908 9.08391533970119 9.20212688638579 9.20534485682743 9.0164905897332 9.14679910047276 9.21100570912538 8.5935158324286 8.5982040960703 0.12577000807674 0.121876997208199 0.123620189419679 0.126821779072095 0.121876997208199 0.138080525775259 0.121895907950889 0.121876997208199 0.141178166226321 0.126808011667795 0.128737273907138 0.124063069617814 0.121876997208199 0.127552485722915 0.124232728463756 0.124238200962510 0.135348397641970 0.132627425011297 0.131871610060221 4 4|0 +|/ 478741 479393 479080.5 477152 479936 + gene protein_coding_gene FALSE TRUE AT4G01100.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G51050.1); similar to Os05g0585900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056459.1); similar to mitochondrial carrier-like protein [Solanum tuberosum] (GB:ABC01898.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.213132366054558 2.46651188895328 0.0315304293567186 1 1.79231340879099 17.9477099378882 0.213132366054558 0.0494981973213136
AT2G24970_at 0.273748161721853 0.963889867598573 0.83361095756523 1.06903577996747 1.26515424564304 0.81580449862729 1.04813213492961 1.25942637884476 1.07763708707711 1.35595451340198 1.8460126298072 2.00398274709631 1.64696872020848 1.61478730122258 2.36223704260314 1.31792793568045 0.830823832194784 0.844978795083878 0.750256864235005 0.182320654272898 0.1840951705496 0.180416661027723 0.180175256034601 0.185259168765289 0.185811966842338 0.186961680389883 0.179364936131149 0.189320325103255 0.181321681916785 0.185965760735947 0.191556992984373 0.182255036122740 0.186457530874652 0.184290281383010 0.181954795289149 0.188936260229438 0.184737622731854 0.186052754108169 2 2|0 -|/ 10627298 10628289 10628017.9 10627197 10628386 - gene protein_coding_gene FALSE TRUE AT2G24970.1 similar to Os01g0766400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044356.1) 0.303392144296398 2.46617209270922 0.0315493761300938 1 1.79179015856314 2.25097410164146 0.303392144296398 0.152669220058501
AT1G32680_at 1.07677273642990 1.35990701176717 1.99393618733943 2.01073319809998 1.97808424237993 1.53842615587368 1.76790126498038 1.39555079802381 2.17299056816112 1.65201765462360 2.02093347660444 1.82687076995557 1.98003517606955 2.31047367684738 2.23505672717186 1.66256383256836 1.4192263395976 1.73013865091519 1.75111434460128 0.249762443591617 0.254974013161451 0.249762443591617 0.249762443591617 0.249762443591617 0.272869663137219 0.249762443591617 0.249762443591617 0.249762443591617 0.251843675336537 0.262254388866462 0.249762443591617 0.249762443591617 0.249762443591617 0.256794670325154 0.253390377020018 0.249762443591617 0.266357086591138 0.249771744824401 1 1 + 11818049 11818221 11818125.6 11818014 11818259 + gene protein_coding_gene FALSE TRUE AT1G32680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1) 0.259858400938592 2.46578255861492 0.0315711099329902 1 1.79119033550531 3.51859887620091 0.259858400938592 0.111131719639064
AT3G09150_at 4.90029696796923 4.87190706282074 4.12326702271007 4.16515113568523 5.16136592292818 4.16710357537053 5.49639745526741 5.24235587587714 3.45891908068508 4.82294090958642 4.02946317567026 4.74773396479988 3.96965982500817 4.43387701906471 4.06215911028038 3.96459155293722 3.95604416883907 3.85429770203297 3.92430590338876 0.253498567823374 0.250992662029003 0.262946312222261 0.257447853656189 0.250305159252438 0.263248145727611 0.247478302230132 0.247478302230132 0.264843082625167 0.250713204981834 0.260039584130017 0.252527866372238 0.253373807932032 0.270792233710307 0.260703778229821 0.257572999402847 0.251189335133561 0.251712791177005 0.248346935829581 3 3|0 +|/ 2804327 2805215 2804736.889 2803533 2805593 + gene protein_coding_gene FALSE TRUE AT3G09150.1|AT3G09150.2|AT3G09150.3 HY2 (ELONGATED HYPOCOTYL 2); phytochromobilin:ferredoxin oxidoreductase Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Identical to Phytochromobilin:ferredoxin oxidoreductase, chloroplast precursor (EC 1.3.7.4) (Phytochromobilin synthase) (PFB synthase) (PPhiB synthase) (HY2) [Arabidopsis Thaliana] (GB:Q9SR43;GB:Q8L8Q6;GB:Q9SS72); similar to phytochromobilin synthase [Solanum lycopersicum] (GB:BAD93478.1); contains InterPro domain Ferredoxin-dependent bilin reductase; (InterPro:IPR009249) -0.33250553801723 -2.46551265639496 0.0315861775313574 1 1.79077473868277 8.86395576701981 -0.33250553801723 0.17780514090539
AT4G31460_at 5.63780223942614 5.88481340015545 5.46343149930517 5.555490416325 5.89450415682754 5.93232587484154 6.09994532671238 6.18688188078385 5.13627432203033 5.60388879644059 5.28769534028899 5.60700416018938 5.01714042792351 5.13693614667555 5.56527882185028 5.42363867967864 5.22547509113318 4.85185972017126 5.60517388177407 0.199402804589144 0.203325547649539 0.199112641743009 0.20062956925715 0.197463107375545 0.215855583747639 0.199189467009086 0.203512405798830 0.209860468924384 0.197463107375545 0.202847150372195 0.200648084845835 0.201028213891449 0.205678745873022 0.201532361803978 0.204243973051862 0.209528002907144 0.202105480426809 0.201431837494788 4 4 - 15259813 15260774 15260336.545 15259475 15261244 - gene protein_coding_gene FALSE TRUE AT4G31460.1 ribosomal protein L28 family protein similar to hypothetical protein DDBDRAFT_0204554 [Dictyostelium discoideum AX4] (GB:XP_640528.1); similar to Os07g0544900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059912.1); contains InterPro domain Ribosomal protein L28; (InterPro:IPR001383) -0.212494921602062 -2.46520020338894 0.0316036293504713 1 1.79029363361159 11.1883114569157 -0.212494921602062 0.0484793435372204
AT4G38670_at 2.79632342535342 2.73182769656761 3.09359866808027 2.56712656441864 3.71952084947151 3.72762201742508 3.53535955679255 3.74323071442788 2.62392429702651 2.66200850382439 3.02560072186989 2.40031110626635 3.41878212664994 3.08242202332139 3.15112295807205 2.55726648457713 3.44757376630259 2.97109527584726 2.4709111535639 0.198220406885678 0.204714086489958 0.203648993798469 0.208552020687003 0.202973366061361 0.199154833800145 0.200049153068579 0.199116908837995 0.22337919527751 0.206003769152398 0.203931429933589 0.200849259092090 0.196743102748182 0.224181939116202 0.204212124371485 0.196743102748182 0.207577347341444 0.198450729200102 0.200980929349629 4 4 - 18070417 18070919 18070656.182 18069610 18071349 - gene protein_coding_gene FALSE TRUE AT4G38670.1|AT4G38670.2 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT4G36010.2); similar to SCUTL1 [Vitis vinifera] (GB:AAF06346.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.248219416477616 2.46502937589045 0.0316131747700982 1 1.79003060423171 6.03551941623458 0.248219416477616 0.0985969165991797
AT4G36210_at 9.9672201355646 10.1207565640479 10.0884262237009 10.1515911753356 10.1036172397290 9.70791609537911 9.2198777171615 9.43116449272384 9.28698928208262 8.91762054621265 9.27460158907298 9.29156894314515 9.13916973467745 9.30526736501207 8.57771261501085 9.24874264603242 9.13623178782522 8.97764171291279 8.72700079886456 0.149243142030932 0.142693010252793 0.144520748246216 0.146513943333834 0.142693010252793 0.149079490198723 0.152178034482988 0.142693010252793 0.150661517529261 0.160558827921689 0.144122120125785 0.145489028185596 0.148245433457363 0.147641294830133 0.155340509955010 0.142693010252793 0.164648772324359 0.164498375577244 0.151982208168468 4 4|0 +|/ 17132785 17134266 17133426 17130249 17134659 + gene protein_coding_gene FALSE TRUE AT4G36210.1|AT4G36210.2|AT4G36210.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18100.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93615.1); similar to Os03g0112800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048731.1); contains InterPro domain Protein of unknown function DUF726; (InterPro:IPR007941) 0.234898231493107 2.46445967904982 0.0316450283897021 1 1.78915344815802 18.8968565012542 0.234898231493107 0.0827745517811722
AT3G10700_at 3.62378677625463 3.45240693373195 2.95819018419942 2.84018924319493 2.90373869674354 3.06111033997752 3.24864275842393 3.90611834224386 3.91639921226340 3.50964788956441 3.7843652275795 4.03322174623186 3.82059025492557 4.01019842446126 4.04149675063051 3.58305234803815 3.65892489803300 4.08622662233415 3.97944801120768 0.220507237433747 0.211421037833569 0.221205083970726 0.221888876363094 0.213050910367111 0.211554421577796 0.212814413298672 0.226759270209271 0.226204723625754 0.211421037833569 0.211421037833569 0.211421037833569 0.213115790275706 0.217476905177917 0.211421037833569 0.211421037833569 0.223223146117778 0.212497099809776 0.216006776652593 3 0|3 /|- 3346802 3347983 3347457.25 3346583 3351028 - gene protein_coding_gene FALSE TRUE AT3G10700.1 GHMP kinase family protein Encodes a GHMP kinase family protein. Based on gene trap line GT8007, the gene appears to be expressed in a petal and stamen-specific manner, between flower stages 8 to 11. similar to Mevalonate and galactokinase [Medicago truncatula] (GB:ABE90601.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Galactokinase; (InterPro:IPR000705); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase; (InterPro:IPR006204) -0.270751878475323 -2.46399400023255 0.0316710893091902 1 1.78843647851024 7.08881852853343 -0.270751878475323 0.122409143326131
AT4G12250_at 3.94204948003169 4.9534828656704 4.47354718339485 4.61948831422391 4.9203950661855 4.80521064655294 4.34030308164005 4.58221543070884 4.33401896572543 3.81573017637058 4.43211807288504 4.35404866319898 4.50546792798688 4.58411528282105 4.32640658587167 4.50520532174469 4.40576906125002 4.48040300037557 3.91839199468014 0.205525090114328 0.202000232413263 0.208001840278984 0.206928781937021 0.210268268540190 0.198839159612475 0.212167559476393 0.208151432628639 0.230924056963157 0.203834886201818 0.19741942787305 0.196394873784728 0.205812299214454 0.203166325146739 0.202938960084397 0.196394873784728 0.209259031630634 0.213564447305864 0.201075815087171 4 4 - 7289551 7290104 7289812.273 7289186 7290896 - gene protein_coding_gene FALSE TRUE AT4G12250.1 GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4), catalytic [Arabidopsis thaliana] (TAIR:AT2G45310.1); similar to NAD-dependent epimerase/dehydratase; TonB box, N-terminal [Medicago truncatula] (GB:ABE85249.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) 0.338312807667287 2.46391499019194 0.0316755130510983 1 1.78831483563268 8.81553923443875 0.338312807667287 0.182823496376676
AT1G34670_at 0.839112152048748 1.01213171851734 1.07743257998479 0.770012211349797 0.7135264726633 0.989556695891824 1.14549384926028 1.03809628413273 1.58850959781651 1.22756790333471 0.820606350874154 0.777186686328054 0.911520962551455 0.851734530167713 1.18689693435932 0.781164025473068 0.778931419687815 0.834477434588724 0.818717575047517 0.204456542678335 0.208081097554186 0.205672787362435 0.209536326698418 0.205225996405121 0.217490980073045 0.204717017213172 0.210036110900724 0.211733576013771 0.21276908117198 0.212251346965780 0.204456542678335 0.206023530922646 0.210417673794211 0.205378487253682 0.204456542678335 0.210660318412757 0.205149204262327 0.215106415791848 1 1 + 12709829 12710351 12710111.545 12709106 12710401 + gene protein_coding_gene FALSE TRUE AT1G34670.1 AtMYB93 (myb domain protein 93); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB107 (myb domain protein 107), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G02940.1); similar to transcription factor MYB102 [Lotus japonicus] (GB:BAC75672.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.232430038373235 -2.46349048312251 0.0316992913752264 1 1.78766128358452 1.98787682134945 -0.232430038373235 0.0797122871168465
AT3G29020_at 0.849211336286805 0.811173245939965 1.13719254820393 1.60320774905245 1.12382967316747 1.43879600261750 0.788992993144547 1.11962973055501 1.12546155321502 1.07521667663660 1.06672160930940 1.14995841282608 1.0438329881153 1.25907335536849 1.13239577897813 0.846235911051733 1.47215398387862 1.46374767136886 1.06883933984897 0.184399870465021 0.181845517451143 0.178278789989127 0.188121660646832 0.181452812394291 0.178278789989127 0.183730042215939 0.181058244051875 0.191480088983295 0.181025097560169 0.178278789989127 0.183625475383944 0.178830163743442 0.196668736938246 0.181777927612406 0.185923926983468 0.188039607963844 0.189231463268324 0.183614789058889 3 3 - 11009885 11010424 11010144.273 11009354 11010693 - gene protein_coding_gene FALSE TRUE AT3G29020.1|AT3G29020.2 MYB110 (myb domain protein 110); DNA binding / transcription factor|MYB110 (myb domain protein 110) Encodes a putative transcription factor (MYB110). similar to MYB105 (myb domain protein 105), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69560.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE80439.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.261465220370318 2.46308807095228 0.031721848175323 1 1.78704176929816 2.24355623675210 0.261465220370318 0.113101716093043
AT2G27840_at 4.86759353504521 5.15577877104157 5.28123815110031 5.0160423086263 4.62859574518999 4.74138631570096 4.79981760391456 5.51758007320822 3.42218660062843 4.25344194353306 4.82176841956741 5.54834633538091 4.59347265432855 4.29602615769327 5.10192206399126 4.55944876695129 4.84958226743716 4.49465204888512 4.41604610648794 0.240499416279872 0.244584412198686 0.237661273262735 0.239675003193244 0.237661273262735 0.237661273262735 0.237661273262735 0.253770828936633 0.262338932399647 0.245759434411620 0.244109239033322 0.237661273262735 0.237661273262735 0.244338651180937 0.243025414135016 0.238444654452954 0.241065080646103 0.240045606612439 0.241057402326259 2 2|0 +|/ 11869781 11870759 11870109.7 11869071 11870963 + gene protein_coding_gene FALSE TRUE AT2G27840.1|AT2G27840.2 HDT4 (histone deacetylase 13) Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39 Identical to Histone deacetylase 2d (HD-tuins protein 4) (HD2D) [Arabidopsis Thaliana] (GB:Q9M4T3;GB:Q9ZUY5); similar to HD2A (HISTONE DEACETYLASE 2A), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G44750.1); similar to Histone deacetylase 2a (HD2a) (ScHD2a) (GB:Q6V9I6); contains domain Glycosyl hydrolase domain (SSF51011) 0.292108628374113 2.46293149493637 0.0317306291193811 1 1.78680072587496 9.40785934105965 0.292108628374113 0.142839223089654
AT4G08770_at 2.02171590079614 1.95842704844974 2.88149119452383 3.01908986154168 1.66072303143445 2.15026222091606 1.804549017467 1.86501214093923 1.78185514198245 1.75861633203565 1.59325786396650 1.83442988564726 2.04050831851238 1.68601068281837 1.69728361910819 1.5956585133145 2.12481373348900 1.82314866178432 1.96458325016691 0.252587515387106 0.250869080487801 0.254422802775224 0.252305770367791 0.254751958182491 0.254628421586309 0.251970766714552 0.254675909336597 0.249351851061439 0.240924604618223 0.24374039970877 0.244311589264657 0.246577257993979 0.249497493567777 0.246495009840976 0.247520157613103 0.240333428466869 0.246014495769903 0.250131804501981 4 4|0 -|/ 5598389 5598933 5598621.3 5598112 5600309 - gene protein_coding_gene FALSE TRUE AT4G08770.1 peroxidase, putative Identical to Peroxidase 37 precursor (EC 1.11.1.7) (Atperox P37) (ATP38) (PER37) [Arabidopsis Thaliana] (GB:Q9LDN9;GB:Q8L7B3); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G08780.1); similar to Peroxidase C2 precursor (GB:P17179); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.239918109313017 2.46187068691385 0.0317901828898855 1 1.78516773159684 3.98736237762105 0.239918109313017 0.0892940733899908
AT2G20420_at 9.93013478020472 9.86394890532205 9.99810708264664 10.0648184126833 9.69381213169808 9.57023754541845 9.77723033658547 9.77927587459386 8.85436228192562 9.1360987172721 9.37112880339727 9.51712346020485 9.24707429121822 9.29736241984239 9.70119859498968 9.30742021399517 9.33115084740147 9.17322018509732 8.87564809056829 0.0872420216482563 0.0882629112980673 0.0875884908667226 0.086405095386715 0.0867994487199177 0.089084835633414 0.0873752338266544 0.0869838011084717 0.0965519586471112 0.0853318503023583 0.086723143059079 0.088018023526204 0.0844770436068028 0.0906300303753132 0.0879744305077699 0.086286186127544 0.0901272542873176 0.0933389393611717 0.0881203987933412 2 2|0 +|/ 8813994 8814798 8814307.25 8812534 8815201 + gene protein_coding_gene FALSE TRUE AT2G20420.1 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative Identical to Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS-beta) [Arabidopsis Thaliana] (GB:O82662); similar to ACLA-1 (ATP-citrate lyase A-1) [Arabidopsis thaliana] (TAIR:AT1G10670.2); similar to succinyl CoA ligase beta subunit-like protein [Solanum tuberosum] (GB:ABC01911.1); similar to succinyl CoA ligase beta subunit [Lycopersicon esculentum] (GB:AAO22150.1); similar to Os02g0621700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047463.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Succinyl-CoA synthetase, beta subunit; (InterPro:IPR005809); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP-citrate lyase/succinyl-CoA ligase; (InterPro:IPR005811) 0.203468237182364 2.46172337385612 0.0317984616746418 1 1.78494097126996 18.9964854079476 0.203468237182364 0.0268685599442532
AT3G06190_at 7.19434398398484 6.88889622595058 6.96413977869748 6.8003158104095 7.04482617384037 7.23335478162599 6.5546428403643 6.0113478650556 6.13787584726352 6.6637361760771 6.99403583704893 6.78903366813745 6.13444687576101 6.9616559871003 6.93205680001737 7.08342076470537 7.092291712157 5.96698730789152 6.89042572390957 0.211403793334045 0.215825567122461 0.213386624935829 0.21244820655632 0.223949709011118 0.227299492995702 0.212199520248016 0.224267790213109 0.231115047337916 0.221346142400694 0.216180687076116 0.216125534183405 0.22044258345975 0.212866181325742 0.217745086779603 0.216902804770286 0.230064225663233 0.219830771367218 0.219591352405206 3 3|0 -|/ 1874651 1875748 1875132 1874297 1876919 - gene protein_coding_gene FALSE TRUE AT3G06190.1|AT3G06190.2 ATBPM2; protein binding similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to Os07g0101400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058677.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); similar to Os07g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060495.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); similar to Os07g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060495.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.264289971995072 2.46135661640694 0.0318190820713564 1 1.78437643040489 13.4906102832506 0.264289971995072 0.116198068078472
AT3G14670_at 1.95508070475425 1.90709421528942 2.43202673494938 2.28346540681608 1.97265462944814 2.00056978145509 1.90381688239826 1.89996229882534 2.61516974538097 2.38033225634565 2.43521844496301 2.20207817552217 2.86034961301948 2.31959544092158 2.37451439057217 2.36768844844677 2.66407281724841 2.37468309272323 1.89930087642625 0.171423466487306 0.178269038007901 0.176241338511694 0.176221152716325 0.174521055782584 0.173903138509724 0.172966359413303 0.176508157707032 0.182200020560092 0.176874849671656 0.181091603764826 0.171423466487306 0.186126414319735 0.183383178606451 0.173603049491827 0.174097262905074 0.179548913123159 0.177808607969986 0.177928163158290 3 3|0 +|/ 4927966 4928828 4928201.889 4927854 4928875 + gene protein_coding_gene FALSE TRUE AT3G14670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08710.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001076490.1) 0.203599019863251 2.46120157390341 0.0318278030345106 1 1.78413778247172 4.41835517123102 0.203599019863251 0.0274537383853294
AT1G79670_at 5.55245712786676 5.56815406188902 5.96846884281496 5.72142157917812 6.52617174250222 5.66449318919469 4.78549267609719 4.61922434301114 4.94904943260423 4.6518643537233 4.84008372979541 4.69582789225505 4.56403149510175 5.05953730739019 4.18336663790731 5.26534198656482 4.72846890768887 4.20318256543507 5.14180071770608 0.215408787080001 0.210341376898260 0.214014913792994 0.219875562958521 0.212244272194924 0.223410297863252 0.210341376898260 0.210412895046526 0.211430665762137 0.210341376898260 0.216544830999668 0.216889696807115 0.219285052921348 0.220061752850042 0.213571719637079 0.21110934457605 0.224737062775365 0.216142395029425 0.230096276218097 1 1 - 29981788 29982336 29982066.545 29981618 29984243 - gene protein_coding_gene FALSE TRUE AT1G79670.1|AT1G79670.2 RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase|RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races. Identical to Wall-associated receptor kinase-like 22 precursor (EC 2.7.11.-) (WAKL22) [Arabidopsis Thaliana] (GB:Q8RY17;GB:Q4JQ55;GB:Q9MA08); similar to WAKL2 (WALL ASSOCIATED KINASE-LIKE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G16130.1); similar to WAKL4 (WALL ASSOCIATED KINASE-LIKE 4), kinase [Arabidopsis thaliana] (TAIR:AT1G16150.1); similar to WAKL5 (WALL ASSOCIATED KINASE-LIKE 5), kinase [Arabidopsis thaliana] (TAIR:AT1G16160.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.308524341731290 2.46078556330994 0.0318512146911191 1 1.78349745689304 10.3540945619585 0.308524341731290 0.157794525117364
AT4G10950_at 0.681625282748407 0.511949939704726 0.78026539311315 0.904398537533341 0.614979471597251 1.13694032946653 0.821465005758761 0.983589310218051 1.17765149696708 0.354010301449682 0.959596518722085 1.24199320549693 1.16490595770800 1.34729548239275 0.950844807670858 0.879535872699527 0.772172030347161 1.28236526950274 0.519937383443769 0.206222232620323 0.203828511001179 0.196123456139395 0.195869336320956 0.200405920503199 0.198921623461696 0.199140245950979 0.20131580596814 0.212901093121823 0.196424253861855 0.201196121294478 0.196532939000334 0.199622433833395 0.19868454402736 0.201886641494969 0.200984486300895 0.207263325967156 0.206721030599420 0.20965688923566 4 4 - 6711530 6712547 6711912.273 6711382 6713508 - gene protein_coding_gene FALSE TRUE AT4G10950.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G08460.1); similar to putative GDSL-lipase [Oryza sativa (japonica cultivar-group)] (GB:BAD21752.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.250230398717039 2.46065176380961 0.03185874804447 1 1.78329151680652 1.68375417727803 0.250230398717039 0.101340637780918
AT1G02540_at 1.22023925678973 1.41074572559598 1.66310309182760 1.59348193179598 1.57592088894298 1.64237498419823 1.21058697444175 1.20716418785884 1.64591907357048 1.67240110777114 1.83467180536717 1.4819140779596 2.16567670390982 1.88904949395651 1.69284351706164 1.54349152619294 2.04067385210973 1.47840332084699 1.80769190248795 0.163356137908722 0.168944480725388 0.16901976074184 0.170165459973289 0.166020890374309 0.168944196895808 0.169174839178871 0.166987934421354 0.166408558392904 0.169156710715386 0.164822114003375 0.174804712796080 0.168630917808466 0.178019303190864 0.170416597498964 0.163839496146805 0.171652217362433 0.170586321114940 0.169071137363053 1 1 - 534832 535281 535016.455 534827 535699 - gene protein_coding_gene FALSE TRUE AT1G02540.1 similar to hypothetical protein 17.t00039 [Entamoeba histolytica HM-1:IMSS] (GB:XP_656128.1) 0.206853015292659 2.46048716837966 0.0318680176973635 1 1.78303817975708 3.17770774607409 0.206853015292659 0.0369412664637659
AT3G10160_at 6.24481732534836 6.13197952982938 5.35482826273304 5.21972424807838 7.28438640611882 5.78720407244066 7.3157481031074 6.74026569530018 6.4914876431044 6.59983283053633 6.03622156249202 6.56891429754432 6.56179559418215 6.62065744607651 6.00636317530943 6.32118839369522 6.32564754451539 5.96543384389962 6.49165968380033 0.235138842613700 0.236730565562783 0.239157364363676 0.233798553314575 0.233658566110454 0.245356926910450 0.239563535905738 0.233658566110454 0.241454109742236 0.233658566110454 0.244348816640330 0.239035049594512 0.235462253285912 0.243414132062357 0.2444021664576 0.233658566110454 0.244283011394469 0.247028765862629 0.243023281574329 3 3|0 -|/ 3139845 3140341 3140115.375 3139388 3144528 - gene protein_coding_gene FALSE TRUE AT3G10160.1 ATDFC (A. THALIANA DHFS-FPGS HOMOLOG C); dihydrofolate synthase similar to ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT5G05980.2); similar to putative folylpolyglutamate synthetase [Oryza sativa (japonica cultivar-group)] (GB:AAG13624.1); similar to Os03g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048721.1); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645) -0.461774618159814 -2.46019182327416 0.0318846574889881 1 1.78258360816931 12.6740880977169 -0.461774618159814 0.279241833734948
AT1G76400_at 7.63234607070037 8.07479957870636 7.69364284316682 7.31531422631006 7.9547007000337 7.5040466036528 8.20494247054919 7.94931286708709 7.74554873371295 7.18832431503176 7.02313801989327 7.4733791973267 7.0036279910769 6.42268465293028 7.57928540505245 6.7486548342844 6.90331289040883 7.48517017921461 6.95934631887448 0.228827205290377 0.220215511791039 0.235047584643419 0.238233920737311 0.220428887248044 0.226208965846164 0.220194450369295 0.221447438508663 0.225933338252867 0.215082730459969 0.225359428817840 0.217514355259136 0.215263267144956 0.220178624026531 0.239496008878037 0.222299697788126 0.234887681060536 0.223554877650594 0.214939673020562 1 0|1 /|- 28663673 28664274 28664047.556 28663448 28666604 - gene protein_coding_gene FALSE TRUE AT1G76400.1 ribophorin I family protein similar to ribophorin I family protein [Arabidopsis thaliana] (TAIR:AT2G01720.1); similar to Os05g0301500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055134.1); similar to Ribophorin I [Medicago truncatula] (GB:ABE83243.1); contains InterPro domain Ribophorin I; (InterPro:IPR007676) -0.283128648201438 -2.45945092040447 0.0319264374291129 1 1.78144331956726 14.9799613877657 -0.283128648201438 0.134864249504483
AT1G16920_at 6.17012322500886 6.81554300805692 5.36518620687677 5.29746170674460 5.75383615368066 6.3640794003577 6.22212185615602 7.00852864403632 7.41202964152141 7.0771140826035 7.75554056150423 8.23238031626368 7.38057873707508 7.39415013893893 7.89643988923567 6.61483585569629 6.21414467194209 7.67327519221334 7.3133796014971 0.231615312700211 0.224402445922892 0.227990016067777 0.236017925971393 0.225558509330979 0.230961487055617 0.227848782631774 0.233603745449474 0.240288774452289 0.226546890561082 0.222319017705072 0.229392322559839 0.226604866928942 0.230608768996649 0.232879264489060 0.225670152701861 0.239911800233857 0.227865081695340 0.224542269072003 1 1|0 -|/ 5787482 5789041 5787942.6 5787323 5789242 - gene protein_coding_gene FALSE TRUE AT1G16920.1 RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. Identical to Ras-related protein Rab11 (RAB11) [Arabidopsis Thaliana] (GB:Q39222); similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02113.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.365638960624131 -2.45895194808787 0.0319546048882811 1 1.78067541510478 13.4559479978977 -0.365638960624131 0.205635677563966
AT3G52300_at 10.8309556461694 11.1151923157973 11.1141040137039 11.1579005650714 11.0443717708996 10.888290630438 10.9581603034330 11.0933883859394 10.5363390417673 10.8841487708540 11.3429207173611 11.3189207536577 11.1308698455753 11.1403056579851 11.3344146378824 10.9752587720962 10.7563521454545 10.9989554291494 10.7940507958893 0.087918849894115 0.0838497605381381 0.0903885499867235 0.0857339210426137 0.0845828308069166 0.0943891556178861 0.0855996164835038 0.0875805576594842 0.093566342554686 0.0822106068773278 0.0824523099555185 0.0824023524143284 0.0830204224220669 0.0904772968631598 0.0847978445905025 0.0846288768604112 0.0921904481404649 0.0834252669376095 0.082551093064288 3 3 + 19407683 19408998 19408140 19407543 19409355 + gene protein_coding_gene FALSE TRUE AT3G52300.1|AT3G52300.2 ATP synthase D chain-related|ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) Identical to ATP synthase D chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9FT52;GB:Q8RW89;GB:Q8W039); similar to ATP synthase D chain, mitochondrial, putative [Solanum demissum] (GB:AAT40531.1); contains domain FAMILY NOT NAMED (PTHR12700)|similar to ATP synthase D chain, mitochondrial, putative [Solanum demissum] (GB:AAT40531.1); contains domain FAMILY NOT NAMED (PTHR12700) 0.219156395459216 2.45852974867421 0.0319784573976294 1 1.78002568733635 21.9567600944642 0.219156395459216 0.0612712688042311
AT3G04290_at 1.88926657124409 1.84973184232885 0.78399978022413 0.974618207513346 0.556831889251527 0.835823388976192 0.731095740113523 0.646341431400343 1.32308166759238 1.07292635988116 1.09000433181137 1.50646975324414 1.48543733066570 0.915199478612586 1.05383089928 1.72872925012060 0.991466447067888 1.31218042528238 1.22365030997400 0.189445498812982 0.186998814266388 0.190213645657327 0.184195484606109 0.185886655796071 0.186901715908377 0.184195484606109 0.18854581209888 0.191638370867430 0.190134377723960 0.188036476525178 0.185254096871650 0.187449131852681 0.186732885083175 0.184195484606109 0.187575977264575 0.194407832686744 0.199161386605325 0.196091350636409 3 3 - 1133637 1135171 1134320.727 1133331 1136323 - gene protein_coding_gene FALSE TRUE AT3G04290.1 ATLTL1/LTL1 (LI-TOLERANT LIPASE 1); carboxylic ester hydrolase similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G33370.1); similar to GSDL-motif lipase [Agave americana] (GB:AAS75127.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.218714309709502 -2.45772578898836 0.0320239258578228 1 1.77878852839989 2.26694736571138 -0.218714309709502 0.0606723652564502
AT1G31690_at 2.12260227264187 2.35377242519896 1.36170258419838 0.550699066213608 0.983242872739434 0.656526632700819 1.08584389149267 1.36574854037996 1.15789719163632 1.16424476777598 1.50270653899733 2.33235037122877 0.163921008151439 1.33774883075732 1.70146309848842 0.624647437840162 0.849531292638322 1.22795116167368 0.68794059284583 0.194119529813496 0.201667059081780 0.196172589206955 0.197574244030640 0.193692066896914 0.199129380442592 0.193692066896914 0.196884278934469 0.206583836136809 0.193942442578342 0.196216810376429 0.196293751771013 0.193719181276238 0.195406914827901 0.198154962543167 0.198110589752809 0.202003906956395 0.194874492185385 0.193692066896914 1 1 + 11346619 11347705 11347205.727 11345378 11347748 + gene protein_coding_gene FALSE TRUE AT1G31690.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31710.1); similar to diamine oxidase [Brassica juncea] (GB:AAL47166.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.314884938373042 -2.45636124277508 0.0321012431883818 1 1.77668891440927 2.42046769480803 -0.314884938373042 0.163832273266844
AT4G19730_at 1.27367239927156 1.23810319143306 1.12406462990991 1.15950217938702 1.05996273943172 1.14512588043795 1.44166318076544 1.26055609043737 1.72080236011902 1.72221822252472 1.59199794339416 1.26021738360406 1.38163498551523 1.24124388217473 1.55482115261003 1.26890967243330 1.03831806911908 1.66409977050873 1.37437450590026 0.244341564290585 0.252537886206299 0.252279215165876 0.256872901531198 0.248236841312122 0.250273118257593 0.246706066065478 0.249720357092387 0.252942335803112 0.248482544874537 0.252727433813145 0.252480489995029 0.244582252135152 0.248541557663273 0.252668421600913 0.247022022820264 0.244341564290585 0.252658805992004 0.250076764981781 4 4 - 10733879 10734515 10734229.273 10733874 10734985 - gene protein_coding_gene FALSE TRUE AT4G19730.1 glycosyl hydrolase family 18 protein similar to glycosyl hydrolase family 18 protein [Arabidopsis thaliana] (TAIR:AT4G19760.1); similar to chitinase, class V [Nicotiana tabacum] (GB:CAA54374.1); contains InterPro domain Chitinase II; (InterPro:IPR011583); contains InterPro domain Glycoside hydrolase, family 18; (InterPro:IPR001223) -0.205988931806646 -2.45594279931079 0.0321249893455947 1 1.77604510839996 2.70330814651821 -0.205988931806646 0.0357069803422438
AT3G26390_at 2.34685218439714 2.37650087453276 2.26887895028346 2.37458664361031 1.51009060904683 2.19989660399230 1.84591542259606 2.57323652605189 3.03831838691266 2.77867213676237 2.71313824740050 2.00139705704939 2.6121253245806 1.76300787111582 2.15881775727288 1.85886586683683 2.01545099455003 2.62933198166352 2.21162473113961 0.191864287961213 0.191425320445436 0.195105794336556 0.197191486838986 0.207465569249898 0.192054121690883 0.198883983423845 0.196887211575270 0.191425320445436 0.198034107145404 0.193594843758534 0.197262397836987 0.196652820058912 0.197459534003753 0.203946781717541 0.195151580952242 0.217773261842123 0.194272319828568 0.199116551380432 3 3 - 9664714 9665157 9664915.636 9664687 9665187 - gene protein_coding_gene FALSE TRUE AT3G26390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39010.1); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.327225623770377 -2.45534636469457 0.0321588659297475 1 1.77512748966098 4.6346057130623 -0.327225623770377 0.174509258228587
AT3G15370_at 3.12596387275366 2.41819729910737 3.58210965690384 3.46247616277482 2.96590711061096 3.20488994826883 2.98475725245098 2.41703129409922 3.60978610844176 2.99380409643291 3.42891950155244 3.03171224443018 3.34740163795289 3.35827140663576 3.42088370606971 3.48063017551554 3.82146433123692 3.73738782273668 3.57114563685247 0.239276815270039 0.234779412220223 0.246316108502931 0.240025580718265 0.230591375172726 0.238282078358078 0.242255988666146 0.237120288132115 0.237519611793690 0.235313399115056 0.232947333386861 0.240785634296631 0.231490947391665 0.240882481895886 0.23190099805444 0.237334972968704 0.235250171817145 0.230529561344078 0.238248944307907 3 3|0 +|/ 5190911 5191872 5191333.7 5190579 5192084 + gene protein_coding_gene FALSE TRUE AT3G15370.1 ATEXPA12 (ARABIDOPSIS THALIANA EXPANSIN 12) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A12 precursor (AtEXPA12) (Alpha-expansin-12) (At-EXP12) (AtEx12) (Expansin S2) (Ath-ExpAlpha-1.24) (EXPA12) [Arabidopsis Thaliana] (GB:Q9LDJ3;GB:Q53XE5); similar to ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) [Arabidopsis thaliana] (TAIR:AT4G01630.1); similar to alpha-expansin precursor [Gossypium hirsutum] (GB:AAM47001.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.314556764697009 2.45510520732193 0.0321725732032381 1 1.77475648066495 6.44262280820886 0.314556764697009 0.163687324566809
AT2G02480_at 3.12372385526898 2.88680067623719 2.95216211544305 2.55132845452836 2.72804533723224 2.71020992849687 2.94596979749762 3.2253859260441 3.38548152609004 3.59235507831256 3.68172762966221 3.56778273467673 3.13941946609614 3.1085205654348 3.45576765535827 3.34873798907877 2.86660448328933 3.27461419738646 3.46739869455947 0.224784485671738 0.219236772928279 0.221214405880650 0.228679701826837 0.222607061204789 0.22142044185832 0.223315536275343 0.223530741881376 0.222683116745681 0.224059655875563 0.218435965696053 0.222450642971127 0.223872089049083 0.21859379664417 0.233495999359048 0.220789065545018 0.221556056674270 0.218435965696053 0.225554426023183 2 2 + 664580 665271 664837.455 660742 665634 + gene protein_coding_gene FALSE TRUE AT2G02480.1 STI (STICHEL); ATP binding / DNA-directed DNA polymerase STICHEL mutant shows trichomes with fewer than normal branches. similar to DNA polymerase-related [Arabidopsis thaliana] (TAIR:AT1G14460.1); similar to Os12g0209300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066394.1); similar to hypothetical protein LOC_Os11g13990 [Oryza sativa (japonica cultivar-group)] (GB:AAX95843.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III, subunits gamma and tau; (InterPro:IPR012763); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.243190932184014 -2.45460937367628 0.0322007740802712 1 1.77399368853263 6.28402423123198 -0.243190932184014 0.0940232746089753
AT4G17880_at 5.32090206079475 6.15033597121214 6.21227184853542 6.46929543022092 6.7528087118066 6.20829901949535 7.79153707817974 7.51404436536014 6.37770443792143 6.98174094370094 6.47548621771057 6.77360681636704 6.09178160419457 6.86510119345322 5.84351584315202 6.66714005330163 6.46450990476372 6.66894071830667 7.26126434476412 0.248714555380766 0.224862884414959 0.231353867506756 0.223141891719731 0.223417823305443 0.240820849249877 0.221685570120146 0.225884070890779 0.231673982797160 0.233388635407081 0.223816069274266 0.227368930166071 0.225936739660407 0.231725909242048 0.2378378283134 0.224543445202766 0.233044474642542 0.231040975019781 0.23280765179934 4 4 - 9933735 9934229 9933955.182 9933379 9935599 - gene protein_coding_gene FALSE TRUE AT4G17880.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G46760.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.337922865630717 -2.45290324995007 0.0322979955233971 1 1.77136922970030 13.2298519120515 -0.337922865630717 0.183757224601372
AT4G25390_at 4.84082291159114 5.56499416222544 5.79824449932701 6.13084953644813 5.606151894316 6.00829800518987 4.50543368022806 5.0215805621513 4.64297268225699 4.18181631098185 4.27789776307786 4.02498828401777 4.25403159801802 4.45969748693005 3.58588076169877 4.58347278379494 4.19190678465935 3.86700967666293 4.36090396577227 0.241365061672396 0.253050972398755 0.240692395382426 0.251914533306082 0.24908445721376 0.239669837390143 0.258371546088069 0.238431309525957 0.245501759118226 0.23850616285909 0.244004100126977 0.241486395717414 0.241316370891953 0.244910026221086 0.237799118770244 0.237208187783414 0.256603297845829 0.245526369389769 0.246483297512102 4 4 + 12978880 12979412 12979152.091 12977351 12979578 + gene protein_coding_gene FALSE TRUE AT4G25390.1|AT4G25390.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51770.1); similar to Os03g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049573.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94994.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.331528905395849 2.45269206216801 0.0323100497198569 1 1.77104439509723 9.70996772078186 0.331528905395849 0.178437670793096
ATMG00060_at 0.980703976253558 2.28854066590696 1.53406040337066 1.84545734344556 1.69230550767999 1.63735681303824 2.30720548661108 2.52856116729372 1.81009233641175 2.63182905037293 1.40858442591143 1.53283655470506 2.07334989238329 1.46136539690743 1.14012723552233 1.84489610011433 1.99972077182166 1.69361649675205 1.86385256108475 0.219394667732512 0.21822051037145 0.2150398878748 0.218276538500233 0.213407814934177 0.216949971052009 0.214172810650726 0.22194217080387 0.228808287088218 0.222225858954093 0.218582736024967 0.215933349031409 0.218880716630075 0.221450635899787 0.218671585925446 0.211954992913735 0.211954992913735 0.216083608135192 0.216624242165868 M M - 20609 22017 21524.727 20571 22086 - gene protein_coding_gene FALSE TRUE ATMG00060.1 Mitochondrial NADH dehydrogenase subunit 5. The gene is trans-spliced from the three different pre-cursors, NAD5a, NAD5b and NAD5c. similar to NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit 5) (GB:P29388); similar to NADH dehydrogenase subunit 5 [Beta vulgaris subsp. vulgaris] (GB:NP_064039.1); similar to NADH dehydrogenase subunit 5 [Beta vulgaris subsp. vulgaris] (GB:BAD66755.1); contains InterPro domain NADH/Ubiquinone/plastoquinone (complex I); (InterPro:IPR001750); contains InterPro domain NADH-plastoquinone oxidoreductase, chain 5; (InterPro:IPR003945); contains InterPro domain NADH-Ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal; (InterPro:IPR001516); contains InterPro domain NADH dehydrogenase subunit 5, C-terminal; (InterPro:IPR010934); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 5; (InterPro:IPR003916) -0.403285173578914 -2.45264877942527 0.0323125207585537 1 1.77097782127091 3.72489229972722 -0.403285173578914 0.235978456220640
AT4G36160_at 2.02165412979908 2.14698959540656 1.55855968566419 1.83368703505785 1.72860016857513 2.09001733355596 2.10458611293221 2.03010085625576 2.73789421948763 2.16504082238903 2.30878159635348 2.10746648428197 1.67898298862438 2.45279448234379 2.20112999096189 2.22001799682738 2.02856917103568 1.81282598236844 1.98313278573065 0.159950241456122 0.163672697638233 0.169288896627449 0.17319296653651 0.161571080707615 0.162003468388586 0.16371858340469 0.165641874748309 0.169227727116870 0.167570611609507 0.167382165334014 0.163653266825289 0.166644850211487 0.174773051224471 0.173597402912389 0.161668855987679 0.164462081701594 0.160437753045250 0.166377586218912 4 4 - 17110972 17111439 17111249.182 17110750 17114144 - gene protein_coding_gene FALSE TRUE AT4G36160.1 ANAC076/VND2 (Arabidopsis NAC domain containing protein 76, VASCULAR-RELATED NAC-DOMAIN 2); transcription factor Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. similar to VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G18060.1); similar to NAC-domain protein Ze567 [Zinnia elegans] (GB:BAE20090.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.233575736910631 -2.45238363248847 0.0323276621886519 1 1.77057000025917 4.13761287922354 -0.233575736910631 0.0825553202495168
AT4G33140_at 3.20060195755821 3.88235445344476 3.22293961812167 3.6335219220014 3.42486942383199 3.39930018089639 3.66474764130889 3.89121602875136 3.66591129025382 3.38279233035848 3.11479441873222 3.16003731197569 2.94045999852394 3.12095659663339 2.80441672177760 3.56181254332114 3.25454686868204 3.60010760026755 3.56437188265815 0.192847657984305 0.187766248617020 0.198779528496629 0.188834067000399 0.191811946988126 0.191389793160455 0.195587731876071 0.190969503108456 0.197673091051132 0.190339662937680 0.193369845921572 0.188188973359435 0.193113038554754 0.187542022386082 0.200059256839598 0.188203715348838 0.212843967834817 0.201289855411719 0.193598602750165 4 4|0 +|/ 15982655 15984105 15983530.556 15981408 15984354 + gene protein_coding_gene FALSE TRUE AT4G33140.1 similar to tac7077 [Zea mays] (GB:AAV64220.1); contains domain no description (G3D.3.40.50.1000); contains domain HAD-like (SSF56784) -0.291311280493612 -2.45235207249982 0.032329464908455 1 1.77052145863790 6.90611057419567 -0.291311280493612 0.143260208350640
AT3G45190_at 6.81879340194813 7.18098788495169 7.19930807995286 7.43838088165061 7.86817878504922 7.38546313646389 7.1254934336938 6.89556253927679 6.47070731028541 6.57118931364398 6.63279822387188 6.52441991611576 6.98669539123376 6.6887485804715 6.40261713990623 7.01776010099927 7.20463363909229 6.57964893280464 7.02772388674531 0.198344911430236 0.188918857877272 0.192935927587409 0.192339590923929 0.199502224419648 0.193691470730379 0.201994703932600 0.205231163767644 0.214492742481396 0.194292482471693 0.202555063803349 0.190243769974102 0.198094254162827 0.205448860539408 0.199932489139964 0.194537906058593 0.204241713368024 0.201549121436076 0.194889220662443 3 3 - 16553050 16553535 16553302.636 16552658 16559146 - gene protein_coding_gene FALSE TRUE AT3G45190.1 SIT4 phosphatase-associated family protein similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G30470.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G07990.1); similar to Os05g0592500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056496.1); similar to H0714H04.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66980.1); similar to OSJNBa0058K23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAD41753.2); contains InterPro domain SIT4 phosphatase-associated protein; (InterPro:IPR007587); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.266207571407613 2.45200314600009 0.0323494022769427 1 1.76998479239385 13.9612903899334 0.266207571407613 0.119172139028306
AT1G22800_at 3.44279603619381 3.40810570516546 3.59151365126596 3.53712699719721 3.61282908787614 3.31381956960026 4.63486921840206 3.91187653518054 3.11859482828925 3.42427633497889 3.30786151497861 3.21761817348981 3.37006684823716 2.56792763712477 3.51620006893321 2.86411556602752 3.64497582094209 3.26001601960592 3.80578735863708 0.245476988524045 0.243958081543308 0.238934979956544 0.240510458006915 0.240003274149391 0.238873906306221 0.246033870428950 0.255607004370766 0.253890518675665 0.239268671142556 0.244111291738386 0.238903267203190 0.241408390511286 0.237464217521635 0.240791155996717 0.237094322453842 0.237094322453842 0.23930158087678 0.241613159810748 1 1|0 +|/ 8072917 8073964 8073541.6 8071924 8074346 + gene protein_coding_gene FALSE TRUE AT1G22800.1 Identical to Uncharacterized protein At1g22800 [Arabidopsis Thaliana] (GB:O80543;GB:Q84MB4); similar to hypothetical protein Rru_A0736 [Rhodospirillum rubrum ATCC 11170] (GB:YP_425827.1); similar to Os12g0203100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066375.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.28327234085913 -2.45159889245439 0.0323725159924289 1 1.76936305058480 7.01569237351141 -0.28327234085913 0.135854683115929
AT3G57800_at 5.25757327643593 5.47667796310160 4.45379821667217 4.6890977379442 5.60556665785848 5.47625633212954 5.40093545150126 5.19958371838115 6.62013094055491 5.6844927020565 7.03911373040602 6.41595863140986 5.63504126078012 6.3891380586977 5.63573907215006 5.78004454751902 5.03320468397258 6.14605025285961 6.23348626374283 0.214179352088342 0.209929486304216 0.215050830759917 0.211160068549191 0.206945730670344 0.214579340125467 0.208716965917234 0.211901899695952 0.211469188527834 0.214526699921747 0.209417987732250 0.205270475575172 0.203851209743044 0.213866162538431 0.218124953001233 0.203851209743044 0.218797290313281 0.208506308038675 0.210832704555408 3 3 - 21419033 21419247 21419152.818 21418766 21422698 - gene protein_coding_gene FALSE TRUE AT3G57800.1|AT3G57800.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42300.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94659.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.223798277632134 -2.45140673187007 0.0323835086717382 1 1.76906751527360 11.2892642935076 -0.223798277632134 0.0693593958765742
AT1G01140_at 11.2118167577719 11.2048327242556 11.2479334250682 11.2148810320986 11.1020013739513 11.0197335763905 10.7835033723363 10.701343672264 10.7746111149521 10.5833070357234 9.6975455922457 9.76596762231752 9.9133996625869 9.9804034807756 9.38613598903432 10.4818239188173 10.1290919676819 9.85288332149824 10.0631455515347 0.110240287870338 0.108851163562552 0.107638067077285 0.107214715048173 0.109844073951040 0.111007120177844 0.111044232787715 0.111468414376156 0.119990016737011 0.106840602238609 0.114756967229216 0.109351103457346 0.121405198023336 0.106077928084010 0.127268740713860 0.106077928084010 0.115162414459984 0.120375558536315 0.113122374856486 1 1|0 -|/ 64415 65574 65052.1 64166 67625 - gene protein_coding_gene FALSE TRUE AT1G01140.1|AT1G01140.2|AT1G01140.3 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase Encodes a CBL-interacting protein kinase with similarity to SOS2 similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CBL-interacting protein kinase 13 [Populus trichocarpa] (GB:ABJ91220.1); similar to CIPK-like protein 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93761.1); similar to CBL-interacting protein kinase 12 [Populus trichocarpa] (GB:ABJ91219.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.201009118073427 -2.45069612635261 0.0324241910070105 1 1.76797467492079 21.2480529143203 -0.201009118073427 0.0209527996787677
AT4G04760_at 1.02709211202761 1.24524298913404 1.53473531740353 1.21991690413612 0.453242079076528 0.950451634562436 1.27290221803741 1.35367102611957 1.16305309119795 1.24747994685280 0.892666174222317 0.930424456797534 1.02262413191708 0.898566208184706 1.10327634418078 0.94772947362189 1.11115214517347 1.12334454455846 1.58549264147846 0.222633994802596 0.217738387044648 0.223958389092974 0.240720300697540 0.217316190717353 0.215846157418925 0.223349429570024 0.21929316383803 0.229754595079250 0.221607260441346 0.217211117005175 0.217968490101851 0.221029673696489 0.23471756499737 0.232252929159143 0.218067487849032 0.223719768342452 0.222155632057944 0.226046094853919 4 4 + 2426281 2427736 2427175.2 2424162 2427767 + gene protein_coding_gene FALSE TRUE AT4G04760.1 sugar transporter family protein similar to carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT4G04750.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.256713113773023 -2.45049395850499 0.0324357742754333 1 1.76766377321035 2.30002253239970 -0.256713113773023 0.109509748909751
AT3G55390_at 3.41161462871785 3.35005540130316 3.31788194223886 3.06388774075102 3.55830757301889 2.93266210270029 1.48320356499519 1.58092743394349 2.25764174194913 2.44076725925580 2.27432660114894 1.81576511600154 2.17891957896277 1.57124743215023 2.45399677658212 2.06855326564830 1.87419756886428 2.22459223210857 2.1689072543773 0.213324813888989 0.202227915129218 0.204906374837632 0.203278060498513 0.210666707635259 0.232685714539473 0.207106647145396 0.202926049328701 0.205691964527994 0.200806009350262 0.201820021975483 0.204433411295313 0.200075180703295 0.204994658389729 0.201846763526278 0.198473047061972 0.206159754712498 0.205674904599819 0.202958821797212 3 3 + 20545785 20546554 20546157.182 20545592 20546662 + gene protein_coding_gene FALSE TRUE AT3G55390.1 integral membrane family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO60016.1); similar to Os05g0344400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055254.1); similar to Os12g0568700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067067.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) 0.265164492671637 2.44804793853492 0.0325762401246342 1 1.76390261842753 5.01072016843897 0.265164492671637 0.118549998490441
AT1G47310_at 8.14652352247516 8.56755438841464 8.3926432129496 8.33191995118915 9.0143765116781 8.60813266791692 8.18233833272635 8.15444906356277 8.34539459044953 8.26362319766163 8.58447283096267 8.5096052971287 8.29079217848069 8.07197111214183 8.34632320533654 8.52804906300965 8.49352036870977 8.43169844876331 8.08760640989837 0.185120229151211 0.184711881307861 0.190488185820243 0.183946646367405 0.188392416849296 0.185994302932512 0.185557353208218 0.188717269261516 0.188513695706146 0.181206506233204 0.189934863295058 0.184173676175693 0.182753194183849 0.186652034713665 0.183797739406423 0.179295646684453 0.189216619144011 0.186454485238573 0.203148002417552 1 1 + 17346465 17347029 17346670 17345354 17347242 + gene protein_coding_gene FALSE TRUE AT1G47310.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81232.1) 0.249448878101091 2.44796819352950 0.0325808295613573 1 1.76378001091572 16.744373270899 0.249448878101091 0.101906450027793
AT3G29220_at 1.06265171848303 1.33571865261812 0.882114450237593 1.71635279039550 0.950009910187692 1.19841616875598 1.13592371895802 1.25476268009686 2.21586908645873 1.79668832254121 1.68981637603922 0.846772200244973 1.14231836412907 1.42758447161525 1.20747345482902 1.41586830416091 0.99561144383311 1.50758534779206 1.64425975635025 0.211004225770852 0.213204423581405 0.215432260623316 0.215371959793244 0.210078811221284 0.216725186096962 0.215221536794030 0.213339707296986 0.225152130069682 0.212663515511597 0.210078811221284 0.213537438619496 0.214317130924017 0.211967786146692 0.221918158255253 0.210990614160992 0.213960333434268 0.222665811453082 0.213887024400665 3 3 + 11186924 11187482 11187278 11186915 11187508 + gene protein_coding_gene FALSE TRUE AT3G29220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30843.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84482.1) -0.308508919548881 -2.44789463344026 0.0325850636068738 1 1.76366691343318 2.77436099477352 -0.308508919548881 0.159205355438458
AT1G22910_at 5.59374182945445 6.09614340160971 5.86267302227066 6.11264450300405 6.13725403568916 6.22505741268339 6.51782240992283 7.08950500818154 5.23747102129335 5.56149065816405 6.2173726366648 6.49220458955018 6.44940756942788 6.90955316380313 6.23018660490581 6.06034908567843 5.48928698587789 6.20070984095925 5.52999035682283 0.233584421360428 0.215686058071386 0.239592421967057 0.234421639064836 0.215078296294964 0.232846079211363 0.220434420818449 0.232999931001683 0.224904071697204 0.219549418028941 0.225940748898335 0.217280731909402 0.228111601980708 0.221136306224385 0.215078296294964 0.219604819052558 0.243251959827251 0.225102026159887 0.224399789923725 1 1|0 +|/ 8106135 8107447 8106927.875 8105578 8108153 + gene protein_coding_gene FALSE TRUE AT1G22910.1|AT1G22910.2|AT1G22910.3 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to Os01g0958500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045454.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to Os01g0958500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045454.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.286626939317350 2.44741919096068 0.0326124425544463 1 1.76293594555137 12.0539141137029 0.286626939317350 0.139459245195269
AT4G20000_at 1.64485568709017 1.83653171331804 2.04256788965827 2.02124534479470 1.75039252046529 2.13140923322784 0.507325562214272 0.882240554493546 2.25149694977524 0.643846440674819 0.892149219764986 1.22890493643164 0.871110816809976 1.07741097577007 1.09607354915725 0.661271713287782 1.07285065793353 1.25020516241303 0.989571343193497 0.233464750941544 0.241761750262353 0.240331737216386 0.241514665827225 0.235950028627461 0.243873484035491 0.230657473803829 0.234826500947562 0.228080739293247 0.236098029330317 0.228080739293247 0.229295876354735 0.240039218064251 0.228080739293247 0.234262030628952 0.234253474063583 0.233145094463118 0.236597408192643 0.228080739293247 4 4 + 10838432 10838835 10838590.091 10838320 10839152 + gene protein_coding_gene FALSE TRUE AT4G20000.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT4G15120.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.246220459411183 2.44741019358999 0.0326129608955890 1 1.76292211285754 2.75893041657137 0.246220459411183 0.0983415520897052
AT2G31780_at 1.68372303779634 1.61285409695505 1.77977634884169 1.31503287446478 1.25497652916103 1.41448719048741 1.46860462431300 1.68698994920495 1.88045940115956 1.93449319878800 1.62654284577972 1.55567507024279 1.93222973407707 1.30173486957309 1.34039319293315 1.25206875061199 1.71366938116648 1.57404463579848 1.73375366627866 0.209044391733144 0.212115811000652 0.211573355434023 0.217516009719606 0.211859999466362 0.224684769719559 0.219280015150028 0.207915254432415 0.210946905936187 0.230420859941361 0.216866395242044 0.217977790592041 0.217870549540464 0.216900783508568 0.211479991417224 0.211305365818368 0.207915254432415 0.214135190483016 0.213957618550162 2 2 + 13523345 13524386 13523688.667 13522276 13524490 + gene protein_coding_gene FALSE TRUE AT2G31780.1 protein binding / zinc ion binding similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G31760.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G31770.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.242249318357250 -2.44654220123313 0.0326630039979291 1 1.76158769929330 3.22036236411882 -0.242249318357250 0.0938563855685293
AT4G19140_at 8.11782703903388 8.4186227854256 8.24791918518054 8.34167952440263 8.86473438988305 8.5312396608936 8.38399135326475 8.15674477587927 7.1527384830305 7.35353240931045 7.73979354779412 7.99130369183055 7.59627952841911 7.79777516792946 7.20605585220143 7.57520951459995 7.3881835173056 7.36986845625145 7.49720034360896 0.186763612750997 0.183374151700914 0.183374151700914 0.186835582210969 0.189166559279467 0.183374151700914 0.183374151700914 0.188783036650801 0.192724109290264 0.185488052479593 0.183374151700914 0.186112038905639 0.18391505967113 0.187435397852643 0.187574444603938 0.183938474856072 0.194873331903066 0.192593100062437 0.192031437914004 4 4 + 10470345 10471230 10470826.364 10469675 10471401 + gene protein_coding_gene FALSE TRUE AT4G19140.1 similar to Os04g0600400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053760.1) 0.237832474623618 2.44631013878024 0.0326763959795660 1 1.76123095373127 15.8416193750078 0.237832474623618 0.088601423017795
AT3G57230_at 6.91535163061555 7.1529899279152 6.80348721802648 6.87676022601595 7.26989603827187 6.89823908188106 6.85397225545759 6.8267606674473 5.98966431730734 6.45268517638 6.70564930695201 6.53252799865651 6.38613924827718 7.00580343699439 6.6323713068521 6.90081446350956 6.55675206062463 6.71062740704528 6.29396047948067 0.214268055521321 0.206650116183831 0.206716733832269 0.213423292770601 0.212500758267931 0.215797959421797 0.207893336044729 0.207091501730635 0.239876711791577 0.211858673125874 0.219349581326874 0.214958943562216 0.207507223752338 0.218225666956175 0.213159646172634 0.206650116183831 0.225049370205225 0.218599470546561 0.211657183371059 3 3|0 +|/ 21188811 21191615 21190979 21188689 21191911 + gene protein_coding_gene FALSE TRUE AT3G57230.1|AT3G57230.2 AGL16 (AGAMOUS-LIKE 16); transcription factor|AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to Os02g0579600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047230.1); similar to MADS-box transcription factor MADS2 [Zea mays] (GB:AAO85643.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)|similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to Os02g0579600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047230.1); similar to putative transcription factor MADS27 [Oryza sativa (japonica cultivar-group)] (GB:BAD29571.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.229113008290614 2.4457265586139 0.0327100972077388 1 1.76033385809001 13.4118182863722 0.229113008290614 0.0775296980176647
AT3G18280_at 9.03663015623276 9.38717495917189 8.76297405631039 8.96130244363336 8.35528808113738 8.25705035851296 9.81572662489057 10.0028646334206 9.15698454919042 9.16128405131971 9.8024346977983 9.787306358573 9.12410548015404 9.6123659041941 10.0062502376633 9.1489332013173 9.17513962176806 9.77295967867735 8.79342905070975 0.128464284511542 0.131393431846532 0.138015626528794 0.132992160813844 0.129369995661748 0.140780310149788 0.133271099916690 0.133526469931314 0.140834061134790 0.128160895247662 0.128160895247662 0.128160895247662 0.134983348348531 0.128160895247662 0.129091081810978 0.128160895247662 0.131059450810597 0.128160895247662 0.133184828028548 3 3 + 6267118 6267363 6267250 6267055 6267649 + gene protein_coding_gene FALSE TRUE AT3G18280.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.22999550570944 -2.44568970060285 0.0327122268627149 1 1.7602772004687 18.3678361381261 -0.22999550570944 0.0787136417952083
AT2G32080_at 9.19359687763191 9.45184398078905 9.51927570379846 9.73636290455427 10.0071943705732 9.65059274538822 9.55273395032978 9.51750528071934 9.45798444627579 9.185987964264 9.5515180901153 9.44541389331199 9.73166295513898 9.63686394829386 9.06169112168575 9.8063576316997 9.56811009183387 9.48499624082075 9.45183095917902 0.118136646951447 0.114834662274587 0.119644358188480 0.115395671888371 0.114631964708123 0.118612497036332 0.116269257359120 0.120258408771240 0.129768353911139 0.120851492313980 0.119593103262263 0.113983913749891 0.113983913749891 0.117165322014975 0.127711927575182 0.113983913749891 0.120191804937997 0.119199571755297 0.114106704489105 2 0|2 /|- 13649799 13650434 13650070.444 13649314 13651243 - gene protein_coding_gene FALSE TRUE AT2G32080.1|AT2G32080.2 PUR ALPHA-1 (purin-rich alpha 1); nucleic acid binding similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication similar to At2g32080/F22D22.17 [Medicago truncatula] (GB:ABE90927.1); contains InterPro domain PUR-alpha/beta/gamma, DNA/RNA-binding; (InterPro:IPR006628) 0.234997682708633 2.44566826033929 0.0327134657428454 1 1.76024424287818 19.0291854949824 0.234997682708633 0.085171063598126
AT3G16520_at 11.7683028932898 11.9716150591944 11.5678940496482 11.7066344941333 11.8183624917919 11.6856253990674 12.2388372248396 12.3807722368142 12.1788111658018 12.2449323177260 12.1977674430310 12.1969597089123 12.2032514317294 12.1884380091960 11.8431538829576 12.2613392418428 11.8138126677809 12.3000174103903 12.0499558122331 0.0804385878467063 0.0787036841373428 0.0807470449247666 0.0775251453441576 0.0780993296419468 0.0852180625110579 0.079781743662775 0.0796445110106079 0.0824939282953691 0.079294483019214 0.0772382061782893 0.0772166107120411 0.078811395605622 0.0809552310419812 0.0789897392177225 0.0783140743412997 0.0787786955296973 0.080408820448792 0.0777336828580969 3 3|0 -|/ 5619372 5619920 5619648.1 5618551 5620879 - gene protein_coding_gene FALSE TRUE AT3G16520.1|AT3G16520.2|AT3G16520.3 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glycosyltransferase 88B1 [Stevia rebaudiana] (GB:AAR06919.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glycosyltransferase 88B1 [Stevia rebaudiana] (GB:AAR06919.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.213780017823933 -2.44438400707363 0.0327877571330673 1 1.75827022455902 24.0340016009642 -0.213780017823933 0.0542711762199003
AT3G19660_at 6.05951372351035 6.05556504978304 5.67200103006785 5.80832444120431 5.90505363370867 5.59532525906475 4.55983365927345 4.43740252190614 4.61633430008407 4.99903583953597 4.81827046112323 5.10384516707993 4.51346464044099 5.26674674545043 4.16050689018491 4.52723380894135 4.74196085239898 4.6943534230424 4.66018730724327 0.211973371712274 0.213947376951964 0.199819520054982 0.200867080190351 0.209797310626758 0.210666850792736 0.202500644207736 0.201741331997693 0.203925737199006 0.202032176508301 0.201634215514855 0.200952139205766 0.20099254486958 0.198105979583758 0.199860965030182 0.201860618666986 0.204563887926338 0.206320178288649 0.203137507833951 3 3 - 6825685 6825838 6825743.182 6825527 6826012 - gene protein_coding_gene FALSE TRUE AT3G19660.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89770.1) 0.218437976010744 2.44343214855468 0.0328429263445487 1 1.75680727183372 10.2550358635834 0.218437976010744 0.0622806193500463
AT2G26540_at 7.49445795284523 7.19925224972824 6.30374092661101 5.70813171983142 6.96860478672374 6.93468193363417 7.55246403151249 7.38408793883972 6.62335251523286 7.0813386896852 7.38245937893798 7.76668346201789 6.66348293793528 7.29682952187452 7.88669348480133 7.49332591797158 6.73894679374734 7.22921881196034 7.01995103167436 0.176798743322796 0.161626416102546 0.171997832207609 0.175400938345303 0.161603148902364 0.173719220219853 0.161618738576586 0.167065427701585 0.167969224056573 0.171397686189172 0.165060129332353 0.163061349113187 0.165439986784722 0.166737711744435 0.166045901106955 0.168474314485405 0.172962833922018 0.167130694016629 0.163478751322658 2 0|2 /|- 11294753 11296363 11295438.2 11294443 11297438 - gene protein_coding_gene FALSE TRUE AT2G26540.1 HEMD; uroporphyrinogen-III synthase similar to Os03g0186100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049201.1); similar to DNA replication licensing factor, MCM5 component (ISS) [Ostreococcus tauri] (GB:CAL57202.1); contains InterPro domain Uroporphyrinogen III synthase HEM4; (InterPro:IPR003754) -0.264892370869843 -2.44311462295069 0.0328613500913627 1 1.75631928016909 14.0508872512257 -0.264892370869843 0.118816615452761
AT2G19640_at 2.07229836054570 1.77031318190307 2.33275394126056 2.21736318828595 1.93682347773087 2.10860450682853 2.18165079338000 2.04515279915284 1.70177564402860 1.56035197186186 1.66332583491465 2.00217139410738 1.87539947321194 1.69844982313024 1.74603141033798 2.04765407808485 1.89138161189766 2.63791870802835 1.63828192721943 0.191495803561894 0.185186714227260 0.185387561113019 0.188210091529938 0.187699259122462 0.183063024308803 0.186079724533458 0.190892912877499 0.184728332885817 0.192089275819515 0.190423679754246 0.194075090903230 0.190748281235763 0.183303350285055 0.188948767313451 0.183063024308803 0.202336688962093 0.187161356280616 0.183930235855007 2 2 + 8498909 8499352 8499068.182 8498470 8500002 + gene protein_coding_gene FALSE TRUE AT2G19640.1|AT2G19640.2 SET domain-containing protein Identical to Histone-lysine N-methyltransferase ASHR2 (EC 2.1.1.43) (ASH1-related protein 2) (Protein SET DOMAIN GROUP 39) (ASHR2) [Arabidopsis Thaliana] (GB:Q9ZUM9;GB:Q84WB9;GB:Q94CD2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06620.1); similar to SET-domain transcriptional regulator-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05333.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) 0.221677094395955 2.44108116189291 0.0329795765457444 1 1.75319446378721 3.87250072584466 0.221677094395955 0.0676133448702409
AT3G16750_at 5.98382760782328 5.96290932282295 5.8615363626082 5.49636478036684 5.9922595691329 5.57057370792256 5.39469588519543 6.00223044760613 5.97428142511326 6.64600552735955 6.29205011006619 6.3437716776617 6.0866658011133 6.21207540733502 5.73431186505064 6.80773863834265 6.1475057451211 5.78464242302462 7.32750371983091 0.242631619300991 0.230674502161377 0.232501100536897 0.239589226372086 0.239114123849292 0.246144023621492 0.232862825586511 0.245553491236626 0.247473570154959 0.234358212730545 0.233306897114878 0.231540494519205 0.234570526645930 0.235634285907034 0.247732912047244 0.228814640976794 0.237446780374988 0.238800523905229 0.228814640976794 3 3|0 -|/ 5701280 5701754 5701526.7 5701020 5702330 - gene protein_coding_gene FALSE TRUE AT3G16750.1 similar to shell matrix protein [Pinctada fucata] (GB:BAD00044.1) -0.289450279912249 -2.44107078808828 0.0329801807462297 1 1.75317852381712 12.1957290933843 -0.289450279912249 0.14277849518309
AT2G20700_at 2.35014351831737 2.27283149110090 2.15689577200472 1.90260796246228 2.08328821120606 1.79712720875387 2.51079768728935 2.5771010544292 3.00512468839112 3.01735816593699 2.81906774603218 3.19414028076223 3.04072649703003 3.50482471888801 3.15295857823464 2.84905197815056 2.64494046882955 2.91716349658775 3.02921291011214 0.258547834908343 0.253598978469037 0.255443035818729 0.264222265261516 0.247389779309654 0.256155166552433 0.255269444248577 0.261504004321470 0.254476118270328 0.251864308828675 0.257154248718204 0.252912647089044 0.26168436077391 0.254900933997505 0.267009358559905 0.250243202115683 0.262012333317855 0.261627628595512 0.252329875456772 2 2|0 -|/ 8932089 8932771 8932344.889 8931975 8932885 - gene protein_coding_gene FALSE TRUE AT2G20700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28280.1); similar to GPI-anchored protein [Vigna radiata] (GB:BAA34247.1); similar to Os02g0721700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047962.1) -0.222305675046595 -2.44105025742041 0.0329813765437264 1 1.75314697726347 5.2226446842177 -0.222305675046595 0.0685531746489092
AT1G11020_at 6.80631099528418 6.6377393383556 6.85721629118256 7.04484074696321 7.08448110309184 7.08799911677496 6.52928169701295 7.01451526686876 6.48681880689998 6.1037161496773 6.28991150699562 6.72307282175913 6.17663778992825 6.89926758369934 6.44446448453029 6.76323287252346 6.68161861580915 6.35600576708825 6.39561004854558 0.227621756851188 0.220212873094607 0.223201115572634 0.227877647688256 0.222255726056517 0.243095677942536 0.225685133394483 0.214429953463079 0.225317558620428 0.223051320332276 0.214429953463079 0.21727363601276 0.223031998593317 0.22210526514576 0.215566508702812 0.219485433622084 0.229120797399789 0.217027202406241 0.22981652951339 1 0|1 /|+ 3677815 3678292 3678057.111 3676691 3678524 + gene protein_coding_gene FALSE TRUE AT1G11020.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G22120.1); similar to zinc finger, C3HC4 type [Tetrahymena thermophila SB210] (GB:XP_001015280.1); similar to Os01g0610700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043547.1); similar to Os08g0384900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061703.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.242366959353419 2.44097146401596 0.0329859662149227 1 1.75302590719148 13.3180437854414 0.242366959353419 0.094641020455699
AT2G28100_at 2.72415590947504 2.94335584433288 2.29358624919285 2.46528523361561 2.78578951361228 2.48460648510034 3.17586319511152 2.94899164480050 2.74657243869841 2.38212318112169 2.58072611331031 2.74173056565622 2.48243337441169 2.19925191929798 2.88495745372459 2.60958066619816 2.15904900591704 2.77557265981814 2.59952151473794 0.210623196329882 0.214085517429406 0.210545715694642 0.222363399178307 0.212705580091864 0.236377685556817 0.210861239313466 0.206908256862478 0.216126873956145 0.210283404434367 0.208628611169999 0.211273637583176 0.206591804834344 0.209389489082743 0.217454031753602 0.206591804834344 0.209973766099936 0.213275953996293 0.20853090248456 2 2 + 11981882 11982323 11982102.182 11981740 11983677 + gene protein_coding_gene FALSE TRUE AT2G28100.1 ATFUC1 (alpha-L-fucosidase 1); alpha-L-fucosidase Encodes a protein with α-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFUC1 was not able to act on XXFG substrates, at least when heterologously expressed in Pichia pastoris. The enzyme has been postulated to act on fucosylated substrates other than xyloglucan oligosaccharides. was shown (Pichia pastoris) to hydrolyze fucose in 3- and 4-linkage , hence was characterized as alpha-L-3,4-fucosidase Identical to Alpha-L-fucosidase 1 precursor (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase) (Alpha-1,3/4-fucosidase) (AtFUC1) (FUC1) [Arabidopsis Thaliana] (GB:Q8GW72;GB:Q9ZUV2); similar to B0103C08-B0602B01.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68057.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Glycoside hydrolase, family 29 (alpha-L-fucosidase); (InterPro:IPR000933) -0.231342218221982 -2.44060647143122 0.0330072349528913 1 1.75246508854423 5.29282180839401 -0.231342218221982 0.0811165137690785
AT3G44940_at 1.93143262055465 1.93676248851185 1.45590558016328 1.25871662249256 1.68906262267344 1.61804774337038 2.2777118294029 2.02045138942897 2.15559245794334 2.06212597598857 2.41732866038424 2.70845713562043 2.23014270087739 2.2825132887918 1.82945381093507 1.79870216097841 1.23527874664340 2.45982971668296 1.82552193832214 0.22741139662947 0.219923333691036 0.218228963644492 0.219552718036813 0.216870311422233 0.229465304867128 0.221442628798916 0.220053113175844 0.230782849308746 0.225651668878446 0.216739875060869 0.220055290811378 0.228796860924306 0.224883725988923 0.224718682896169 0.217424110216751 0.227824960821371 0.217752279701158 0.222168480592917 3 3 - 16424939 16425358 16425145.909 16424319 16426251 - gene protein_coding_gene FALSE TRUE AT3G44940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22930.1); similar to Os05g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054464.1); similar to OSJNBa0095E20.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE02422.2); contains InterPro domain Protein of unknown function DUF1635; (InterPro:IPR012862) -0.215178309801741 -2.43976104660372 0.033056550669632 1 1.75116614549662 3.84082472959087 -0.215178309801741 0.0574317145513843
AT3G05327_at 2.21298539097008 1.93011273718118 2.01478490611855 2.30081635283948 1.79309166174281 2.02038676929011 1.81493715943590 1.68816270252911 1.28914644625381 2.19309899949879 1.13986240683913 1.07435331936208 1.73199151180147 0.811069089540835 1.25082136622439 1.34378890967614 1.47082011903888 0.61012537477443 1.812939110471 0.244776409738384 0.233006504601387 0.233006504601387 0.233006504601387 0.235571170792966 0.238672250014022 0.242503132644095 0.242574088298584 0.240190166912404 0.234575822685907 0.233158706003786 0.24286829083729 0.241261918380291 0.253684653893877 0.236484841530897 0.233006504601387 0.245443941873910 0.250973051832050 0.236751732096010 3 3 - 1517664 1518111 1517970.714 1517587 1518405 - gene protein_coding_gene FALSE TRUE AT3G05327.1 similar to CYCP4,1 (cyclin p4,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G44740.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os05g0398000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055471.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -0.232618540807678 -2.43938796447598 0.033078336313677 1 1.75059295882993 3.44399247546259 -0.232618540807678 0.0829157169578972
AT3G52900_at 2.03590791336517 1.80890692422065 1.73610048731782 1.96973033786024 1.72572891473285 1.82094495956132 2.36974713051401 2.37860512601932 2.19406665325318 2.64878084288965 3.48704683850153 4.1841746005473 2.81626184891398 3.3913094297204 4.60614382235448 3.35508099988894 3.07281382126191 3.04041086348796 3.33875797356192 0.211264861234549 0.202874996264116 0.200454789787620 0.201850300636606 0.202791323059928 0.20623695997161 0.199146173714442 0.206153865860139 0.212013884552827 0.207381547902556 0.203168223218185 0.202409638172597 0.200180960465414 0.214740539313554 0.203831519197481 0.201046274903777 0.204090254870883 0.206599720560961 0.201579813332642 3 3 + 19624119 19624805 19624344.182 19624096 19625005 + gene protein_coding_gene FALSE TRUE AT3G52900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36355.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033) 0.215893928093959 2.43905552546546 0.0330977604509121 1 1.75008223043406 5.09138752485866 0.215893928093959 0.0587512084818838
AT2G23350_at 7.26711012957264 6.92004521382154 6.26175490256303 6.47100133581092 6.49274049689967 6.41567718813309 7.45940617394938 7.59108436382537 6.95964764394154 6.98300232739041 6.97055561078976 7.63227777363362 7.1653397346214 7.19033546012932 7.88816174482079 7.11232305854458 7.15988793955468 6.73989945385134 6.41588802907775 0.158637777034911 0.157925063938175 0.165196173538140 0.160595535278803 0.158932885115708 0.160810174114025 0.157614676543110 0.157972685432239 0.162501277487022 0.157090464199669 0.152798247734644 0.159576496931903 0.154960526657920 0.165537917524506 0.160385705695795 0.153176968914032 0.161077918182878 0.158941610749314 0.157860557565812 2 2 + 9952346 9952967 9952611.273 9950133 9953349 + gene protein_coding_gene FALSE TRUE AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to poly(A)-binding protein [Daucus carota] (GB:AAK30205.1); similar to RNA-binding re (GB:ABE82276.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66823.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515) -0.226474862958634 -2.43782473625903 0.0331697713061701 1 1.74819149179888 13.8691159408035 -0.226474862958634 0.0749380696639212
AT3G45960_at 1.33056546202878 1.45178878405693 1.30374712442844 1.44523981119938 1.23637941472017 1.27388750330204 1.11515249777578 1.31122877767259 1.4603797076566 1.63536679174347 1.87817391670893 1.83421952700879 1.54485107291314 2.10991293010484 2.14818621602619 1.60149418501882 1.74023967468223 2.02524229208455 1.26616937198097 0.200420373340462 0.200820808293760 0.201069070410822 0.200634739241659 0.195928507858418 0.201940849449219 0.196381764145607 0.195928507858418 0.209634432031009 0.20017636116749 0.202962206725191 0.200174862182023 0.201889012331915 0.203968290880965 0.195928507858418 0.202748560683726 0.195928507858418 0.203312219454428 0.203914139399349 3 3 + 16904137 16904716 16904502.455 16903741 16904885 + gene protein_coding_gene FALSE TRUE AT3G45960.1|AT3G45960.2 ATEXLA3 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A3) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A3 precursor (AtEXLA3) (AtEXPL3) (At-EXPL3) (Ath- ExpBeta-2.3) (EXLA3) [Arabidopsis Thaliana] (GB:Q9LZT5;GB:Q8GZA5); similar to ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) [Arabidopsis thaliana] (TAIR:AT3G45970.1); similar to expansin-like protein [Quercus robur] (GB:CAE12163.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) 0.209473801360203 2.43722130782349 0.0332051324020206 1 1.74726458068596 2.96562963887074 0.209473801360203 0.0472562948379366
AT1G07980_at 4.45978294007189 4.50899977430283 4.67237898999858 4.69721559509087 4.71326821729296 4.15734664718547 4.68489304855759 4.77293210022755 3.85185631761367 4.16173378828762 4.66268744580431 4.67188642559547 4.8192476671026 4.47813674693168 4.90584853226701 4.79571913173167 4.61894428119001 4.00029728155402 4.23558804149853 0.236264228874665 0.240037760977352 0.235854929600718 0.244806798515086 0.241458730723527 0.248939259803724 0.235902811203944 0.2451367858904 0.247057583134021 0.238117198305014 0.237316913002345 0.239136028306291 0.236165182169312 0.246586744941101 0.236979930545682 0.234530024932249 0.245794593381814 0.241938900836593 0.237829823557803 1 1|0 -|/ 2473546 2474854 2474362.222 2473162 2474924 - gene protein_coding_gene FALSE TRUE AT1G07980.1 histone-like transcription factor (CBF/NF-Y) family protein similar to Transcription factor CBF/NF-Y/archaeal histone [Medicago truncatula] (GB:ABE80077.1); similar to Os03g0852300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051922.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.244718476578749 2.43657949198246 0.0332427833453702 1 1.74627875847439 8.93442982483532 0.244718476578749 0.097869843883189
AT1G32360_at 8.5177664985476 8.31809960210257 8.1858311586704 8.12867366841181 9.005072528259 8.45860624243592 7.85303057229202 8.03857339456978 8.2301757175533 8.10923838645476 8.22045532929458 8.32744546929716 8.63726019043087 8.40300984040567 8.1841272411875 8.50802001278517 8.4835744154014 8.17904025816482 8.03977466366166 0.147037042302600 0.146409138080815 0.142548709161457 0.148891929866917 0.142738866944076 0.142534978404588 0.150508904235232 0.146544405774969 0.159022715018821 0.149991616331006 0.150063171685611 0.142534978404588 0.148926433612926 0.152017633976291 0.158148015535946 0.142534978404588 0.148100353514604 0.143586389396030 0.146171325732067 1 1 + 11673882 11675042 11674632.182 11672911 11675319 + gene protein_coding_gene FALSE TRUE AT1G32360.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G35430.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE79187.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.25207436064864 2.43603368468734 0.0332748348684847 1 1.74544044887899 16.5603381334165 0.25207436064864 0.106141267521489
AT1G57550_at 2.08697210003685 2.60576265045844 2.09260699425045 2.37128087365264 2.17485122215838 2.20122187412263 2.4765427505937 2.20308854605846 2.06008347926624 2.69111893892524 1.49070698386447 1.86599048371164 1.97364704214307 2.00980372145863 1.90704455777424 1.64036911142958 2.2953515519967 2.51944974550541 2.28573192225408 0.171597392550569 0.176338776235049 0.172770117970765 0.176807301328175 0.171890330602877 0.184037405118690 0.173946002947621 0.187079024981268 0.174739408474518 0.178824523464357 0.185542053637492 0.183026828561538 0.173177646565094 0.173796006144573 0.176606805846526 0.174658321709345 0.175451507956991 0.181203921975745 0.176296085189087 1 1|0 -|/ 21316206 21316450 21316322.444 21316206 21316474 - gene protein_coding_gene FALSE TRUE AT1G57550.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At1g57550 [Arabidopsis Thaliana] (GB:Q9FE70); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G38905.1); similar to Os03g0286900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049776.1); similar to Low temperature-induced protein lt101.2 (GB:Q9ARD5); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) -0.257975325576946 -2.43600952919439 0.0332762540510156 1 1.74540334921935 4.43076096635844 -0.257975325576946 0.112455626255756
AT2G15050_at 9.88737874856065 9.88368609644653 10.1902723853911 10.0813978405657 10.5723817691108 10.5832125444212 10.8272108199227 10.9837195590826 10.3484618278836 10.9519716102460 11.3633236597921 11.2195273007696 11.5815761012067 11.3994156721704 10.7584867482159 11.0642506628688 11.0017563824562 11.0415258739010 10.8997159149424 0.0836933518209765 0.084387934903796 0.0860081220611304 0.0856558375441478 0.0859516177418401 0.0829295186367858 0.082071405784311 0.0816907750011355 0.0876527904053706 0.0820287562073568 0.0803053412020177 0.0813509082009296 0.0799939779076144 0.0799939779076144 0.086039608581263 0.080028725186431 0.082825287342691 0.0814178656474754 0.0814542572125973 2 2 + 6525998 6526307 6526133 6525922 6527242 + gene protein_coding_gene FALSE TRUE AT2G15050.1|AT2G15050.2 LTP; lipid binding similar to LP1 (nonspecific lipid transfer protein 1) [Arabidopsis thaliana] (TAIR:AT2G38540.1); similar to Nonspecific lipid-transfer protein A precursor (LTP A) (Wax-associated protein 9A) (GB:Q42641); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.203333505675533 2.4359261717548 0.0332811519170488 1 1.74527532377386 21.3322154293693 0.203333505675533 0.033052803522781
AT4G09320_at 11.6679045615112 11.8418341031502 11.4363851151386 11.6406714301633 11.2685265224143 11.1487376296746 11.7483619390666 11.8392192677603 11.4944848523549 11.5896014186431 11.5521119888638 11.7897473428217 11.2906236500601 11.4288798813649 11.8739730194601 11.2916153839646 11.3133629303400 11.3044329576637 11.4300547611268 0.0886856362639421 0.087619670426893 0.0959870033410061 0.0873383863693467 0.0883379060385106 0.0958196419525007 0.0931243748406569 0.0864460631015054 0.0987589344304995 0.0892424517167373 0.0866490064682296 0.08619848311911 0.0889417741506808 0.0905152819657308 0.0906950221581671 0.0843722431981682 0.0853173327800843 0.0907356518674096 0.0852397295412274 4 4 + 5923443 5924333 5924081.727 5923397 5924529 + gene protein_coding_gene FALSE TRUE AT4G09320.1 NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase type 1 (NDPK1) gene, complete Identical to Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kinase I) (NDPK I) (NDPK1) [Arabidopsis Thaliana] (GB:P39207;GB:Q41989); similar to NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2), ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana] (TAIR:AT5G63310.1); similar to nucleoside diphosphate kinase 1 [Brassica rapa] (GB:BAB86292.1); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) -0.212435038290962 -2.43560594398064 0.0332999742034154 1 1.74478350729835 23.066608606956 -0.212435038290962 0.0532234723405465
AT4G29790_at 5.93620041433449 6.01762207975264 5.66568126381914 6.05438440615887 5.76918322747513 6.34846578891026 4.95088348643647 4.95739052111398 5.19214239597042 4.38631247141739 5.08746904864054 4.9277285113575 4.68611427993185 4.7360319012458 4.39245504962928 4.98111789083832 5.0823733589646 4.21484742475644 4.59344986950564 0.253444496647699 0.240670521032774 0.243561184594416 0.242311012030646 0.246189767909878 0.273297086059318 0.247229977232024 0.24102131779206 0.262828058673362 0.252648226456774 0.247865959321662 0.242096831207497 0.244496996142427 0.246043069510275 0.255315116385390 0.242059464579983 0.251224951509818 0.278650958287698 0.242687373435253 4 4 + 14589633 14590088 14589848.909 14582994 14590581 + gene protein_coding_gene FALSE TRUE AT4G29790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19390.1); similar to Os01g0967100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045507.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44129.1); similar to Os05g0350700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055276.1); contains domain DHS-like NAD/FAD-binding domain (SSF52467); contains domain no description (G3D.3.40.50.740) 0.266726741860423 2.43515212146270 0.0333266666705155 1 1.74408653575588 10.4562191129010 0.266726741860423 0.121549221119160
AT3G47460_at 0.928455667864606 1.12233818644673 1.59097428858456 1.24942710001101 1.6820299816789 1.58835287009494 1.74166959213896 1.63275443680921 1.28247898577358 1.65441142867195 2.17835106732978 1.58195225247686 1.69400172230346 1.95993146703281 1.91736071748744 1.29943148328202 1.42039376005489 2.03785989368347 1.51440410084422 0.180249809596121 0.180454052128347 0.190657424595497 0.189644542492472 0.185161351517483 0.194495790504862 0.18660650737952 0.204790713711577 0.188539647403723 0.189692271961673 0.184262742091934 0.180249809596121 0.192842149729352 0.189681139110059 0.181417725186133 0.180249809596121 0.192490303408579 0.200198784610665 0.180460263413315 3 3|0 +|/ 17503482 17504088 17503666.9 17497750 17504380 + gene protein_coding_gene FALSE TRUE AT3G47460.1 ATSMC2 (Arabidopsis thaliana structural maintenance of chromosome 2) member of SMC subfamily similar to SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Arabidopsis thaliana] (TAIR:AT5G62410.1); similar to SMC2 protein [Oryza sativa] (GB:CAD59410.1); similar to structural maintenance of chromosome protein [Dictyostelium discoideum AX4] (GB:XP_638528.1); similar to Structural maintenance of chromosome 2 (Chromosome-associated protein E) (Chromosome assembly protein XCAP-E) (GB:P50533); contains InterPro domain SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain SMCs flexible hinge; (InterPro:IPR010935) 0.224393523151952 2.43512145658918 0.0333284710376406 1 1.7440394422803 3.06446283239674 0.224393523151952 0.072369719354146
AT3G04210_at 10.2731368944295 10.5720789767501 10.6160554580951 10.7485969758115 10.4253731503680 10.2968560272180 9.43291093738872 9.4084005941324 11.1743683081597 10.0434404692626 10.7625041225223 10.4242353336405 10.3539931360518 10.8233406814569 9.58251869565022 10.3760600090376 9.72251772207138 10.6657797214718 10.2979005653516 0.101491774949549 0.0979242211506224 0.099718044271945 0.103562571184739 0.102871506716472 0.0990387428114205 0.101634146460191 0.102652305801780 0.110576615786164 0.0995279768675345 0.102603682536997 0.098433860915034 0.100364465284593 0.103825097578574 0.113959377381155 0.0980193225185804 0.111528706784923 0.099184529717204 0.09875047859273 3 3 - 1106252 1106789 1106531.273 1105970 1108076 - gene protein_coding_gene FALSE TRUE AT3G04210.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G38340.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G14080.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G04220.1); similar to disease resistance-like protein [Brassica rapa] (GB:AAV74409.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.216860391172246 2.4349760018234 0.0333370311113170 1 1.74381606238263 20.6437286894387 0.216860391172246 0.0609513734048399
AT2G35100_at 5.17154411272328 5.51784572629496 5.26485507999063 5.17297557078828 5.65386090843178 5.65231024077312 4.91750994813739 5.39236760022906 4.99525042322539 4.72592665590867 5.22854820007084 4.9080248853938 4.98057691242696 5.2514189833636 5.06829355364234 5.03588482716447 5.38332201229906 5.44962918414902 4.83273766799021 0.223075458588096 0.221391275430545 0.224193113628604 0.226244958620691 0.221635656354087 0.222762062678707 0.218546931546166 0.218310794354712 0.23741244023045 0.220838549520699 0.220145533476688 0.231302839919358 0.227599836080476 0.223192195227925 0.218438966840727 0.221927133111655 0.222076799737861 0.223072298490196 0.2218506540321 2 2 - 14800949 14801679 14801336.091 14800730 14802708 - gene protein_coding_gene FALSE TRUE AT2G35100.1 ARAD1 (ARABINAN DEFICIENT 1); catalytic Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. similar to ARAD2 (ARABINAN DEFICIENT 2), catalytic [Arabidopsis thaliana] (TAIR:AT5G44930.2); similar to Exostosin-like [Medicago truncatula] (GB:ABC75371.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.249045503627725 2.43487185069214 0.0333431617654859 1 1.74365611569265 10.3501672661820 0.249045503627725 0.102943359351540
AT3G07570_at 5.27231512851704 5.23838957575129 4.77798137243191 4.83803271453972 5.30037903600319 5.00318130456568 4.19397065553007 2.53317401437594 5.27956030983007 4.16610287044192 5.30488274634711 5.27613618906998 5.08791044136497 4.7541311738279 5.52467369037208 4.98158169713346 4.71738582642608 4.35330893321481 4.71942799876705 0.237941748579558 0.231991623689257 0.239979226222968 0.255899888525421 0.230670776513045 0.235004916134477 0.255032059871752 0.240368144488788 0.237601898665105 0.235419546483913 0.237072434775036 0.231365390477031 0.238917215188599 0.234429523161388 0.231796062996615 0.230670776513045 0.259315571959807 0.237730536352785 0.230670776513045 3 3|0 -|/ 2418241 2418635 2418419.667 2418055 2420302 - gene protein_coding_gene FALSE TRUE AT3G07570.1 membrane protein, putative similar to auxin-responsive protein -related [Arabidopsis thaliana] (TAIR:AT3G61750.1); similar to P0696G06.19 [Oryza sativa (japonica cultivar-group)] (GB:BAC06262.1); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593); contains InterPro domain DOMON; (InterPro:IPR013050) 0.474367770440707 2.43484204872633 0.0333449162025649 1 1.74361034857464 9.50552717366397 0.474367770440707 0.292218010613298
AT1G73760_at 7.53749809460826 7.81135276861652 7.35471357171651 7.09469003496123 7.77684152172796 7.59433229734547 7.00641663224372 6.68044127587814 6.72839053061085 7.09066448088098 7.21545716473936 7.21021146265734 6.90188478546766 7.39458466004353 7.00104977862525 7.09080184009172 7.37201362869522 7.60649156560939 7.00500407683644 0.177829254411395 0.166677917274043 0.167064110876481 0.170416261176263 0.166972654563801 0.169639068268850 0.166062298636250 0.175516754132757 0.179410976033454 0.166091741265228 0.166752307854616 0.164213845946439 0.169278131413772 0.166926040682124 0.176990865062046 0.168946685656311 0.178331143115360 0.169352022275176 0.169135760844816 1 1|0 -|/ 27743040 27743734 27743437.222 27742829 27744868 - gene protein_coding_gene FALSE TRUE AT1G73760.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G17970.1); similar to RING-H2 finger protein RHG1a-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82497.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.239462997449782 2.43481598213635 0.0333464508124238 1 1.74357031800372 14.4397432197292 0.239462997449782 0.091927408223889
AT3G16500_at 6.49670290356018 6.77038940542211 5.54790150731895 5.72092604801665 6.7213355750648 6.03087153551529 6.40929774361078 6.59186220847654 5.41645651441257 5.71607057738756 5.42275617506138 5.92141103719915 5.73611376962369 5.1181775416738 5.31861953098821 5.62734770441306 5.6190380823653 5.60820030470838 5.50768853483334 0.214608488803580 0.210280479299863 0.221324346459214 0.213272019762716 0.219294369089518 0.220039776875971 0.214697075008551 0.213340777130134 0.220247292251802 0.217929021593555 0.220656314779900 0.220693071600135 0.213686338920516 0.238652133436971 0.217853680491477 0.210280479299863 0.228945521923727 0.221753589427435 0.215597505839132 3 3|0 -|/ 5613441 5613980 5613717.222 5612506 5614416 - gene protein_coding_gene FALSE TRUE AT3G16500.1 PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor phytochrome-associated protein 1 (PAP1) Identical to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1) (IAA26) [Arabidopsis Thaliana] (GB:Q8LAL2;GB:Q9LK75;GB:Q9ZSY7); similar to IAA18 (indoleacetic acid-induced protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51950.1); similar to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (GB:P0C127); similar to Os02g0228900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046357.1); similar to Os05g0523300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056086.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.281042461372757 -2.43367959936554 0.0334134196656691 1 1.7418252614364 11.8327591461058 -0.281042461372757 0.135703125706390
AT4G12030_at 9.65026688582036 9.693672867407 8.9334830155475 8.74335781722608 9.66806550233112 9.1194888388576 9.65375223392014 9.63411631926623 7.04334735341032 9.37774529225987 9.5397458046894 9.49642006216196 9.36703830346709 9.7206058604538 8.53484427357127 8.99135555872878 9.21025565442156 9.5619853607694 8.3797094868914 0.176378461572128 0.172904851213967 0.187645955090568 0.166136509515395 0.172777338928033 0.180532602272779 0.184827286178633 0.168145605246706 0.202707548612153 0.172134980222847 0.163294932153816 0.167292302403711 0.165954817576625 0.175845381072595 0.172536244299657 0.172224058040285 0.176718041911041 0.183217883378375 0.172138617636708 4 4|0 +|/ 7211975 7212659 7212282.4 7210912 7212986 + gene protein_coding_gene FALSE TRUE AT4G12030.1|AT4G12030.2 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G22840.1); similar to Os02g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046843.1); similar to Os09g0520600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063701.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) 0.246997016241424 2.43348815863169 0.0334247144687774 1 1.74153129803242 18.1718831370321 0.246997016241424 0.100811374295643
AT1G33680_at 6.62142562535306 6.62093945578496 6.59187441684244 6.82020155075928 7.0976308922555 7.14254894770894 6.68171570755135 6.67294615967993 6.25455736154342 5.6508831196578 6.28281471566908 5.90709706796654 6.30995282366103 6.27118919507364 5.72495769364272 6.45001568695208 6.14713041873574 6.13375670618355 6.11064136070824 0.177523668556084 0.177252605473908 0.181665618283641 0.178656766601024 0.180814466693841 0.17870112233674 0.176583494274525 0.179472526957445 0.180827106188404 0.184161469657922 0.175120695763842 0.176789894509331 0.176835538157778 0.175158069469248 0.174744277965865 0.173087444304935 0.175389927270932 0.178012692197078 0.177211722965087 1 1|0 +|/ 12204810 12208157 12206856.944 12203925 12208678 + gene protein_coding_gene FALSE TRUE AT1G33680.1 nucleic acid binding similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10070.1); similar to hypothetical protein MtrDRAFT_AC157373g6v1 [Medicago truncatula] (GB:ABD33354.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.205905444657472 2.43286143179237 0.0334617167349212 1 1.74056897430203 12.8605227957196 0.205905444657472 0.04029909696019
AT1G78500_at 1.65408741953624 1.42564760369252 1.61218664974304 1.60988096720896 1.87609464059748 1.71465988662693 1.85229721493952 1.29199568453785 1.11563868814307 1.53919052343672 1.34611081047741 1.44768316728092 1.53870197004658 1.60639779446912 1.70487096692741 1.95415877676399 1.86082193730213 2.14987494656007 1.36799765981910 0.191977496793084 0.1975611822941 0.196093532728937 0.199766776402339 0.191791670068347 0.196510127707846 0.200052578660816 0.195800999119687 0.200714260913356 0.195045186113826 0.197375553823182 0.196871921268354 0.195441982087407 0.191734174798004 0.191190572081038 0.201548157335961 0.201674232105397 0.201434792549980 0.203336744264279 1 1 + 29539415 29540037 29539675.455 29536539 29540070 + gene protein_coding_gene FALSE TRUE AT1G78500.1 pentacyclic triterpene synthase, putative similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT5G48010.2); similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT4G15370.1); similar to ATPEN1 (Arabidopsis thaliana pentacyclic triterpene synthase 1), catalytic/ lyase [Arabidopsis thaliana] (TAIR:AT4G15340.1); similar to beta-Amyrin Synthase [Panax (GB:BAA33722.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); similar to beta-Amyrin Synthase [Panax (GB:BAA33461.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.253666905564862 2.43150116437598 0.0335421650117843 1 1.73848050433476 3.15061617670769 0.253666905564862 0.108375481538943
AT1G19860_at 7.48307026628429 7.51823662450119 7.78322822469586 7.93406896561648 7.75765767298042 7.60622051231569 7.98946875787145 8.13492690085173 6.93084074494605 6.70257535411264 7.21756493536572 7.33021545765206 7.4348812057208 7.07710546424034 6.6819359969863 7.42777022421955 7.8431555835153 7.09954749707599 6.87791597187407 0.202897392436198 0.201260546736018 0.203154812056865 0.203393409158751 0.203012159340011 0.204725665829852 0.200134316470681 0.196675060801176 0.208132580132822 0.204600857625593 0.203083446671192 0.200083558632215 0.208095507246616 0.203220661445718 0.201736192563625 0.196675060801176 0.208618568519447 0.208062275019734 0.208002990336842 1 1 - 6891710 6892132 6891933.636 6891420 6894727 - gene protein_coding_gene FALSE TRUE AT1G19860.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51180.1); similar to hypothetical protein [Prunus persica] (GB:AAO14624.2); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.207889780905515 2.43056920309001 0.0335973913882897 1 1.73704977738353 14.8264261085936 0.207889780905515 0.0451539668945227
AT2G36885_at 3.06645130557749 3.45913615789932 2.36975122753530 2.30445231483886 1.96015039477128 1.76583994787442 4.58571143668762 5.19826763938606 2.95398506293241 3.99977762079109 4.94579797080352 5.70373652917836 3.02394590988488 4.30600875117297 5.62467293316282 3.90223907312595 3.67998094373765 5.58962508166978 2.55878838445424 0.262256657682779 0.262150536016027 0.267340358662798 0.267683944851217 0.272184961322751 0.275968106899325 0.266269249881156 0.271867508863919 0.265704645156339 0.264642162829499 0.262150536016027 0.265027736363629 0.263949465692242 0.264202075921737 0.273770985224908 0.262150536016027 0.267130128498692 0.263630915020254 0.262150536016027 2 2|0 -|/ 15489287 15490489 15489832.778 15489082 15490790 - gene protein_coding_gene FALSE TRUE AT2G36885.1|AT2G36885.2 similar to Os03g0137600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048903.1); similar to unknown [Sorghum bicolor] (GB:ABE77193.1); contains domain no description (G3D.1.20.20.10)|similar to unknown [Sorghum bicolor] (GB:ABE77193.1); contains domain no description (G3D.1.20.20.10) -0.275596310299956 -2.43052320920636 0.0336001191975595 1 1.73697917169196 6.97264568064691 -0.275596310299956 0.130819138164898
AT3G55520_at 8.2458828008777 8.11905227411317 7.95128399175333 7.7433301854576 8.06837643796299 7.97796358609565 8.27337944198666 8.10203029307326 8.04359408595368 8.0418271079579 7.84356139277733 8.013222218101 7.52842906463394 8.04864378433049 7.72042840292189 7.77792837261833 7.63624837160243 7.80664257853457 7.82941406296547 0.136975706751248 0.129268170997659 0.129526263482463 0.130509211574157 0.135224965454211 0.129643202434289 0.133932150446224 0.137247161240004 0.130253363386692 0.139007519894679 0.134074296933572 0.126946370510161 0.133968070704832 0.141304020937433 0.131249302300936 0.126622054126188 0.132421344959036 0.127005095423746 0.132428068095102 3 3|0 +|/ 20605208 20605968 20605536.222 20604640 20606324 + gene protein_coding_gene FALSE TRUE AT3G55520.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative similar to peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G48570.1); similar to Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] (GB:ABE83468.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.21228569064883 -2.42989354592745 0.0336374850300606 1 1.73601259865930 15.9444122641562 -0.21228569064883 0.0538602672459305
AT1G78160_at 1.40300004871749 1.15019391484439 1.53637885770118 0.979270719787137 1.48826290229920 0.654242933963555 1.28196391135210 1.48888281873013 2.26098105611269 1.89274821385456 1.63123994059162 1.22286202876071 1.70295112663647 1.62409333663246 1.34800246283604 1.31723712248244 1.26918788549622 1.95965668699099 1.87467232234975 0.233214549669635 0.232984356348124 0.234222638894799 0.230148318308169 0.237551265238274 0.242871579894399 0.233132859080432 0.234377066432748 0.236509543110848 0.232377261998424 0.230913860471290 0.229940437867384 0.238422812266890 0.236839252385731 0.232032834520667 0.229240618434917 0.245910592274265 0.239933239427552 0.248123558404765 1 1|0 +|/ 29414207 29414833 29414571.667 29412793 29415077 + gene protein_coding_gene FALSE TRUE AT1G78160.1 APUM7 (ARABIDOPSIS PUMILIO 7); RNA binding similar to APUM8 (ARABIDOPSIS PUMILIO 8), RNA binding [Arabidopsis thaliana] (TAIR:AT1G22240.1); similar to Os03g0191700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049234.1); similar to Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] (GB:CAL57619.1); similar to Os12g0493900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066803.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.333267346804444 -2.42958231883344 0.0336559689927755 1 1.73553486577155 3.00721002404558 -0.333267346804444 0.182544795767788
AT2G34680_at 7.64473854117222 7.89868108358675 5.98284336391828 7.02907484133993 7.74308910531972 7.91816819816988 7.95575449855329 8.39819885835643 8.89424696113622 9.14530858308757 9.36922797765091 9.37972608213975 8.90265605675071 9.4081379409712 9.20473028534031 9.14921933579336 8.55334049867603 9.4429298254577 9.22391483966824 0.203219131493817 0.175042826681863 0.225344042945101 0.187555138737699 0.175459351851923 0.18931539445568 0.180348531312375 0.172798419446540 0.181126480675729 0.178462427075742 0.168647603352170 0.170501722371288 0.177233513249201 0.167837218070571 0.167837218070571 0.167837218070571 0.187972447323667 0.181579965398945 0.171746372420424 2 2|0 -|/ 14624045 14624963 14624297.125 14623701 14636208 - gene protein_coding_gene FALSE TRUE AT2G34680.1 AIR9 (Auxin-Induced in Root cultures 9); protein binding isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G78230.1); similar to putative leucine rich repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30535.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.358813414590033 -2.42912162640311 0.0336833479592985 1 1.73482772875787 16.7033532921245 -0.358813414590033 0.203697676205304
AT2G20810_at 5.8555417057942 6.56192885967812 6.17531317833167 6.05879802943273 6.46737400720185 6.87729791033077 7.11588308728597 7.21539817804642 6.45373306180325 6.58830178230582 6.61843897657828 6.45145788638314 6.3772953339671 6.22416322597741 6.51568401196525 6.424761579016 5.65286986262186 6.13984835203784 6.71680685063778 0.227445189795266 0.214093203665339 0.220380893294592 0.211985820449194 0.215384613830200 0.220575628861919 0.216962258893170 0.216282663185336 0.224533869453724 0.213295072191462 0.213962714574848 0.215928469360923 0.221737894565177 0.21869950156129 0.217691138105337 0.212256012919554 0.237378734714795 0.226384411408192 0.218175116231476 2 2 + 8966108 8966655 8966384.727 8964874 8966861 + gene protein_coding_gene FALSE TRUE AT2G20810.1 GAUT10/LGT4 (Galacturonosyltransferase 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to H0410G08.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67658.1); similar to Os04g0636100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054014.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.289103918862092 -2.42885402795985 0.0336992613060565 1 1.73441699379010 12.9843646037547 -0.289103918862092 0.143802016707557
AT3G17300_at 6.28237870653879 6.82608001730478 6.48759403329573 6.7135921574206 6.40187784568672 6.60157032160914 6.03135499843425 6.18710559008338 6.32638201859015 6.19451095578392 6.71107274156716 6.62798919656815 5.83746889377761 6.6150519744008 7.06488884576717 6.44574803446237 6.97743835590471 6.38130659997594 6.3508308188468 0.198729481333725 0.195237973436207 0.192262621858822 0.192224263777266 0.198016054519709 0.199114819240211 0.195033504094479 0.197578815196351 0.202734827033462 0.19540186752048 0.195392839423370 0.189232443707419 0.197081570890523 0.192894131797836 0.203766852380908 0.190996120892142 0.197188298073671 0.191594012900092 0.193543086777502 3 3|0 +|/ 5907646 5908676 5908326.444 5907240 5908899 + gene protein_coding_gene FALSE TRUE AT3G17300.1|AT3G17300.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98984.1); similar to Os12g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067050.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011)|similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98984.1); similar to Os12g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067050.1) 0.255737371987719 2.42856843113486 0.0337162530478146 1 1.73397864428069 12.8780417978183 0.255737371987719 0.110920020812207
AT4G17860_at 2.15162286480433 1.81496273942709 1.87785844370771 1.74097774841125 1.74473838340422 1.81132891307909 1.98187336273135 2.12277176157134 2.6092043442898 2.21965262912261 2.42114241636645 2.13694841687002 1.96835759567821 1.83103877540283 2.39497322420190 2.05793326741306 1.87680289551034 2.02889036532072 2.09356329616791 0.183352504037056 0.186267509422409 0.182856077428364 0.185392424181566 0.182856077428364 0.183058769708766 0.189580898321451 0.189266387153493 0.187026334250847 0.189966088143896 0.186786773288338 0.184573524951326 0.189477676280490 0.196224331629247 0.185504310353214 0.187228036681937 0.186106774507180 0.200045107502292 0.187121327962242 4 4|0 -|/ 9924724 9925441 9925037 9924711 9926350 - gene protein_coding_gene FALSE TRUE AT4G17860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46200.1); similar to hypothetical protein 25.t00048 [Brassica oleracea] (GB:ABD64955.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.221022181790479 -2.42786035562525 0.0337584164034933 1 1.73289190080146 4.10425892353649 -0.221022181790479 0.0684305981170039
AT3G02880_at 6.40219025204719 7.15115579720565 6.74536850892618 6.71366466936653 6.49426398656788 7.19614687868886 6.81151099827518 7.37230931063364 7.1199620813608 6.23859313677188 7.65622869613031 7.97333885385516 7.7920859723702 7.87685377835316 7.9828315926671 7.61794001990907 7.09748445603142 7.36480495148583 7.06927566379236 0.193456963442527 0.185902342597327 0.197553806413896 0.189675573470226 0.180894793126378 0.191281428993548 0.181205156715641 0.184877315871682 0.195590574490695 0.187009313642406 0.185273619522989 0.180894793126378 0.183760771388197 0.182157058302657 0.189150902973497 0.180894793126378 0.199250930074153 0.186042248564089 0.185696957572529 3 3|0 +|/ 636346 636944 636677.4 634660 637289 + gene protein_coding_gene FALSE TRUE AT3G02880.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G16590.1); similar to Os03g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049422.1); similar to Putative leucine-rich repeat transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAN05336.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.356994250402776 2.42687281315299 0.0338173068047625 1 1.73137635307804 14.1005628005849 0.356994250402776 0.202487923513006
AT3G09630_at 10.3984338858752 10.7009237790847 10.3007782857633 10.2621275666106 10.2982875245095 9.98464997582568 10.6453464726778 10.7373951468949 10.0766820295933 10.2433488563430 10.2305207894613 10.5141619461481 10.020710856998 9.91301942987584 10.5630423658801 9.92607818087637 9.67869728713916 9.87864638663294 10.0878312304957 0.102095411552162 0.0975668271932953 0.0975668271932953 0.0996594631887867 0.100369870403534 0.109565570817591 0.100304421751605 0.0996845444394462 0.122949427486727 0.101107148910627 0.0975668271932953 0.0979195053061302 0.0982602455829998 0.109860636809605 0.102229793556815 0.0975668271932953 0.123836778858758 0.105182102978417 0.100020217609346 3 3 + 2954442 2955386 2954802.273 2953742 2955753 + gene protein_coding_gene FALSE TRUE AT3G09630.1|AT3G09630.2 60S ribosomal protein L4/L1 (RPL4A)|structural constituent of ribosome Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71290.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71215.1); similar to 60S ribosomal protein L4 (L1) (GB:Q9XF97); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136); contains InterPro domain Ribosomal protein L4/L1e, archeabacterial like; (InterPro:IPR013000) -0.227204183195033 -2.42668219291214 0.0338286856335718 1 1.73108383046686 20.5292746767488 -0.227204183195033 0.077360561143969
AT1G23050_at 3.11229181813256 2.9809875682879 3.44771728088449 3.43134446061232 5.09691282900601 3.93986183764026 3.76867061444855 3.37009853764188 3.45244261541387 3.41178615810226 3.39509417373518 3.18312803337229 3.95198144445845 3.26365682415051 2.94160638988727 3.51731631977808 3.85888010400048 3.65260394492802 3.34041463659586 0.234609446238785 0.232780020992877 0.231185411439103 0.235286480109989 0.260860549818687 0.240879391170422 0.231042236076853 0.238434536166162 0.241935489098659 0.236742955753935 0.230717062451333 0.23574578751441 0.247583415253161 0.242684094586537 0.237281793049742 0.235863815357014 0.240767300210471 0.242330820873927 0.237119419592086 1 1 + 8168624 8169036 8168852.545 8168432 8169256 + gene protein_coding_gene FALSE TRUE AT1G23050.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G70985.1); similar to Os01g0112000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041810.1); similar to OJ1116_C07.3 [Oryza sativa (japonica cultivar-group)] (GB:BAC00686.1); similar to Os09g0332100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062903.1) 0.369966284163085 2.42652187877486 0.0338382582660688 1 1.73083781904531 7.07952622216147 0.369966284163085 0.213014445186198
AT1G54090_at 6.05379385725012 6.58987279676295 6.74231945130676 6.96408351306758 7.00929971236751 6.90200568105909 6.42187123526078 7.11147679720856 6.59339828608044 5.82129088324917 6.88334144929663 6.83141438430793 6.21498678259203 6.50321642376489 6.22903432336762 6.58466261231471 6.12249265038161 6.23824342217163 6.19823539022813 0.219256155018513 0.211726427677249 0.224690134974933 0.22173528541752 0.208396929333468 0.217966356629582 0.208936461457868 0.208396929333468 0.221340915326958 0.214720960175738 0.209048359099738 0.208396929333468 0.214162262888568 0.223454124657244 0.213451497694320 0.209850235930695 0.235805560606173 0.221142975204826 0.214505374014355 1 1 + 20194751 20195210 20195013.818 20193235 20195568 + gene protein_coding_gene FALSE TRUE AT1G54090.1 ATEXO70D2 (exocyst subunit EXO70 family protein D2); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70D1 (exocyst subunit EXO70 family protein D1), protein binding [Arabidopsis thaliana] (TAIR:AT1G72470.1); similar to ATEXO70D3 (exocyst subunit EXO70 family protein D3), protein binding [Arabidopsis thaliana] (TAIR:AT3G14090.1); similar to putative leucine zipper protein [Oryza sativa (japonica cultivar-group)] (GB:BAB86177.1); similar to Os08g0455700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061962.1); similar to Os09g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063276.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.303394618667507 2.42649591171289 0.0338398090522438 1 1.73079797140972 13.0519564768074 0.303394618667507 0.157053926348333
AT3G52380_at 9.36978585431169 9.38568821758945 9.01408083277952 9.29056936542447 9.3783865569957 9.14341142156081 10.2307515794985 10.2168183009598 9.72073285759188 9.87064607125368 9.8029293497715 10.2242851934846 9.62387107369042 9.81403401634885 10.4149006754961 9.52508896381574 9.66396098617073 9.64464787788038 9.4474003231968 0.11731915564257 0.119173803566428 0.121532288940533 0.112863883483588 0.109055378281897 0.126878579156785 0.112824276623787 0.121517089604184 0.124742461332158 0.115669483209547 0.116408159838623 0.112657840423354 0.108891026425490 0.109164627261007 0.111070321631407 0.112435707055893 0.124885999063457 0.117489706754817 0.108891026425490 3 3|0 +|/ 19433005 19433779 19433528.4 19432375 19434075 + gene protein_coding_gene FALSE TRUE AT3G52380.1 CP33 (PIGMENT DEFECTIVE 322); RNA binding chloroplast RNA-binding protein similar to RBP31 (31-KDA RNA BINDING PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT4G24770.1); similar to 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris] (GB:CAA41253.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.217263630415781 -2.42597963988125 0.0338706558422121 1 1.73000574853221 19.2630904416882 -0.217263630415781 0.0628991796242466
AT2G04370_at 1.39536710744224 1.34010820726928 1.39352922121216 1.43517514068174 0.796204847200987 0.943351347096631 0.947302573451778 1.29850130453509 1.50459340754621 1.51707997676913 1.04662115847683 1.34194682348562 0.9810255644846 0.92815073602305 1.17623874010019 0.886378065782683 1.43657269453836 1.33768348508174 1.41323321431537 0.176664751712335 0.178694587146756 0.176406928326568 0.176501912183390 0.180181026189011 0.176600452800129 0.176928724077522 0.175018915200692 0.177985637919038 0.175098757463616 0.182833901599612 0.177022328839751 0.187243904612418 0.177128967303648 0.178117415137633 0.177447913755899 0.183356080536684 0.175018915200692 0.186197051954773 2 2 - 1523764 1524092 1523862.455 1523760 1524118 - gene protein_coding_gene FALSE TRUE AT2G04370.1 unknown protein -0.219864850086827 -2.42577635108878 0.0338828096841777 1 1.72969381069642 2.50375714763134 -0.219864850086827 0.0669747416773065
AT1G26800_at 8.33184425470478 8.57815158963222 8.28267155393828 8.18421458095541 9.30286801100094 8.77079489989682 7.68162974242174 7.8074354410525 8.19092003672408 7.76205151901872 7.94530005742157 7.42201734611248 8.21253992967286 8.03186757397272 7.20209705190181 8.20047450228724 8.36269302357683 7.88100811643448 7.87429131002358 0.181503514454351 0.180014870049740 0.188705162374576 0.193856384074531 0.194458855719273 0.194211687999188 0.186756627512493 0.187725900397864 0.186714874130788 0.185397743231411 0.186489192867310 0.189171100254264 0.182500233752401 0.180738821396183 0.194723476140323 0.184456148603123 0.187417217577287 0.186308080775877 0.193035704189787 1 1 - 9285594 9286082 9285893.091 9285086 9286311 - gene protein_coding_gene FALSE TRUE AT1G26800.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14200.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.250100374706046 2.42557068691667 0.0338951098636523 1 1.72937823386633 16.2922865869143 0.250100374706046 0.105163989048602
AT4G39850_at 7.75353390970083 8.05609223062331 7.71459465624342 7.88860088635115 8.16117262556093 7.67504715029845 7.8616590362846 7.95666846101556 7.81072147536147 7.56424596836905 7.02817842578504 7.0504989777492 7.19963538185636 7.3563327902111 6.78536140412472 7.87226207701216 6.56257124318438 7.01068955938122 7.30636632396352 0.217172882939142 0.214564258121082 0.228372674312921 0.222665560739663 0.211187221478712 0.226305980580058 0.217956517806980 0.219390148390700 0.230079964164447 0.212119525073597 0.210203934096458 0.215655002727168 0.219100178146045 0.215817830852378 0.229186228607897 0.213195790859460 0.267533891258538 0.228976599239797 0.212849736045144 4 4|0 +|/ 18495767 18496714 18496159.889 18488513 18497130 + gene protein_coding_gene FALSE TRUE AT4G39850.1 PXA1 (PEROXISOMAL ABC TRANSPORTER 1) Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G54350.1); similar to putative ABC transporter [Oryza sativa (indica cultivar-group)] (GB:AAO33768.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE94092.1); similar to putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD88253.1); contains InterPro domain ABC transporter, N-terminal; (InterPro:IPR010509); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.249693968305457 -2.42429853389711 0.0339712903708148 1 1.72742633942199 15.2177390303320 -0.249693968305457 0.104860912999948
AT2G31040_at 11.0940424441895 10.8694287488734 11.1943801742047 11.0449886522177 11.3694815923612 11.1082040230634 11.4268686093783 11.0573164360016 10.9523998436005 11.0499308293116 11.1926661345624 11.1990407400128 11.3951481635193 11.4407557888112 11.2122602089122 11.4129956062771 11.4827641188799 11.5688038240146 10.8622645325873 0.0743601246883314 0.0741117063687474 0.0788590349479644 0.0756180725684256 0.0766272148251904 0.0805113171891622 0.073540347882248 0.0740281101416955 0.0766647048590254 0.0731583812107703 0.0758515978377544 0.0736187142605096 0.0740227132499366 0.0766025033183811 0.0737442401447529 0.0744480650669496 0.0755303961305968 0.0731583812107703 0.0751654174916679 2 2|0 -|/ 13216191 13217335 13216703.5 13215983 13218162 - gene protein_coding_gene FALSE TRUE AT2G31040.1 ATP synthase protein I -related similar to hypothetical protein MtrDRAFT_AC135231g19v1 [Medicago truncatula] (GB:ABE82903.1) 0.237769402737488 2.42391385839382 0.0339943587640119 1 1.72683616770755 22.3045485308480 0.237769402737488 0.0911792681678596
AT2G25570_at 5.9610554285556 6.30574718015458 6.50849498306504 6.65857405575571 6.30517490951927 6.11533984112163 6.36705053985292 6.53366688745312 4.93529139490961 5.41643683865688 5.21037264991966 5.61115151372255 5.47400815549946 5.3887417263423 5.6603698333154 5.21992467999022 5.89869089488851 5.87076790545667 5.22255496927808 0.199652191196485 0.204324595423223 0.203724993185394 0.202617824790736 0.195518724666353 0.203085466086327 0.196320413775368 0.199750645679166 0.201307165541220 0.20169199379317 0.197976969635659 0.195518724666353 0.197042183530500 0.209084151470421 0.201462124948316 0.197360238783844 0.210246389612152 0.195518724666353 0.218469570581380 2 2|0 -|/ 10893032 10894443 10893776.667 10892776 10894999 - gene protein_coding_gene FALSE TRUE AT2G25570.1|AT2G25570.2 binding similar to Os02g0202600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046232.1); similar to Sel1-like repeat [Psychromonas ingrahamii 37] (GB:ZP_01350247.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.227670811985841 2.42361501344020 0.0340122905617471 1 1.72637769223735 11.7109785552714 0.227670811985841 0.0783795297045304
AT3G52120_at 6.5481171482621 6.31793805043011 6.73399498065287 6.62988755881294 7.04402958063228 6.96630127845295 6.46580773134492 6.3949718295834 6.55838882267896 6.37105468174698 6.57688210800346 6.4120502702917 6.29815290885521 6.90191816090001 6.39382572487187 6.18517756402574 6.06643792797956 6.59944239736968 6.34368488017129 0.217700025059686 0.223147144052196 0.217684044098838 0.213462987242876 0.218435538929519 0.223645168730814 0.212538894987112 0.215328715108114 0.224848470668033 0.212538894987112 0.212538894987112 0.21325759953087 0.214181646234935 0.220331119324300 0.216646781453806 0.216886510346762 0.231548588433711 0.214219510886993 0.213358076624183 3 3|0 +|/ 19341773 19342588 19342092.333 19339689 19342948 + gene protein_coding_gene FALSE TRUE AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein Identical to Splicing factor 4-like protein (SF4-like protein) [Arabidopsis Thaliana] (GB:Q94C11;GB:Q9SUZ3); similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52350.1); similar to PREDICTED: similar to splicing factor 4 isoform a isoform 3 [Canis familiaris] (GB:XP_864993.1); similar to Os09g0281600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062768.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain D111/G-patch; (InterPro:IPR000467) 0.208352207160353 2.42360792276371 0.0340127161403111 1 1.72636681417054 13.0644370252646 0.208352207160353 0.0473551008790567
AT4G21700_at 2.07105160079865 2.2189567992075 2.69428899990212 2.26040975481525 2.58646503667859 2.62917438029267 2.52514645575966 2.06523495212753 2.08813429962707 2.03829598754898 2.52501404774061 2.35218987348126 2.23287919549925 2.17152954110375 2.59143525138935 2.08238602103813 1.67138011218463 2.48146950288706 2.09097090563257 0.224968439026919 0.218810886783416 0.223059962146508 0.226447532852064 0.228639244850190 0.227957015362045 0.233128385277085 0.224411861099342 0.230450597106656 0.220098413851025 0.219478404192958 0.219855979807941 0.230668508889839 0.220017057040362 0.217900771019024 0.217900771019024 0.235718219049727 0.225129676279818 0.218792475274425 4 4 + 11532283 11532747 11532511.636 11529968 11532856 + gene protein_coding_gene FALSE TRUE AT4G21700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52780.1); similar to Os01g0678000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043855.1); similar to Os01g0678100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043856.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67815.1) 0.256777734922395 2.42328066042035 0.0340323638933529 1 1.72586475675447 4.54934225116527 0.256777734922395 0.112614559747140
ATMG00130_at 1.08699172384196 0.968636708034378 1.05800579416959 1.18368901264391 1.11947257432864 0.626939756763564 1.37253710583166 1.20869204567053 1.32996360305499 1.53872493256175 1.04555210101727 1.21326704520794 1.32509124690038 0.767322079218586 0.842384642497661 1.13754663383164 1.04305703229802 1.00197521528054 1.22937375815540 0.180995932529879 0.181728744549619 0.187365156575606 0.184522224344737 0.187207814879269 0.189368411840279 0.185345161584328 0.181795613350342 0.180964241248578 0.182769019883661 0.185549217090719 0.193131633334374 0.180352871493385 0.203106872807636 0.181091343194325 0.190714890938663 0.180352871493385 0.185302782759005 0.190011233104153 M M + 34250 34520 34399.818 34190 34555 + gene protein_coding_gene FALSE TRUE ATMG00130.1 Identical to Hypothetical mitochondrial protein AtMg00130 (ORF121a) [Arabidopsis Thaliana] (GB:P93282) -0.240591938213706 -2.42288536753124 0.0340561107154181 1 1.72525835302219 2.28464322222164 -0.240591938213706 0.0946654822426637
AT1G77380_at 2.44748975473748 2.43754165241586 2.3804275021811 2.61463280095711 3.13409121643188 2.53021147328633 2.08791989039971 1.90472868563679 1.79924319032526 2.10811023464874 1.76918324257644 1.49733647868998 2.35561437566125 1.56786486606571 1.26011746410322 1.97414554507700 2.28996890430711 2.47596609414704 1.56256433036491 0.203777461812751 0.205101606172697 0.203886700783151 0.208899910876457 0.210486698420311 0.209405085001668 0.207230883944864 0.201319712469566 0.208730177026670 0.207995156156453 0.201049483498632 0.204727501359503 0.211572357709067 0.210533820829521 0.206017267735208 0.203832769940590 0.219506304933756 0.204270357155449 0.203229896350488 1 1 - 29080104 29080702 29080371.636 29079782 29082284 - gene protein_coding_gene FALSE TRUE AT1G77380.1 AAP3 (amino acid permease 3); amino acid permease Amino acid permease which transports basic amino acids. similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP5 (amino acid permease 5), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G44100.1); similar to AAP2 (AMINO ACID PERMEASE 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G09220.1); similar to amino acid permease [Brassica napus] (GB:CAF22024.1); similar to amino acid carrier [Ricinus communis] (GB:CAA10608.1); similar to amino acid carrier [Ricinus communis] (GB:CAA07563.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.260444727649406 2.42284976115155 0.0340582505248717 1 1.72520373172148 4.30317064189317 0.260444727649406 0.116498164289272
AT3G59050_at 6.8936984588553 7.05464763793041 7.16304176249365 7.26165099935303 7.41096071170721 7.16241747181814 7.59183932813315 7.65974389300364 7.44955951335186 7.42278102362325 7.25889097250606 7.01104606343942 6.75623435732547 7.14512632258237 6.92113750907373 6.97548544461175 7.03814307553416 7.1594798476249 7.35043853531478 0.145086271274249 0.142696290470738 0.141962789911360 0.145147672904356 0.146876747970668 0.147560174510694 0.150044135045296 0.154007181210226 0.151034401236206 0.142122664484228 0.144178094300383 0.140153526381429 0.149983066591827 0.154763274302987 0.151128380642978 0.146213791086699 0.155875957264958 0.157684787761479 0.143465067343805 3 3|0 -|/ 21835932 21836459 21836170.6 21835673 21838486 - gene protein_coding_gene FALSE TRUE AT3G59050.1 ATPAO3 (POLYAMINE OXIDASE 3); oxidoreductase similar to ATPAO2 (POLYAMINE OXIDASE 2), amine oxidase [Arabidopsis thaliana] (TAIR:AT2G43020.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); similar to Os04g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053923.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.212432334073508 -2.42259527791410 0.0340735478224481 1 1.72481335170563 14.4951430195037 -0.212432334073508 0.0552728013478256
AT2G46180_at 7.52365839686893 7.77904474968907 7.44283133858581 7.34721874975313 7.91227942739106 7.4294161972779 7.69139235349739 7.7047239629358 7.75012407989959 7.8727964615356 7.52511836716857 8.00770746440622 7.40317206610954 7.3232150109454 7.50429137459365 7.63010397454209 6.7957159297525 7.46653343646542 7.77275219401137 0.201491448901868 0.193360102839668 0.193615786685722 0.200911531138536 0.203014679908933 0.206065170395737 0.209119272201607 0.199284115417748 0.200789702401624 0.198007412958808 0.206653279808973 0.199507283868671 0.197425866579370 0.195384546248778 0.202258514804423 0.193360102839668 0.228253267322298 0.202831328079621 0.199852457149585 2 2 - 18974555 18975774 18974951.889 18974432 18978423 - gene protein_coding_gene FALSE TRUE AT2G46180.1 intracellular protein transport protein USO1-related similar to intracellular protein transport protein USO1-related [Arabidopsis thaliana] (TAIR:AT3G61570.1); similar to hypothetical protein DDBDRAFT_0216773 [Dictyostelium discoideum AX4] (GB:XP_646811.1); similar to Os08g0386900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061711.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.241671906490038 -2.42234706754078 0.0340884744961191 1 1.72443260318075 15.2315905377399 -0.241671906490038 0.095994435498038
AT4G09010_at 11.2689842663342 11.1329376569767 10.6388849352001 10.5504715467643 11.0449010186926 10.9148535452873 11.5190804709057 11.4024667177972 11.8217009321080 11.9731607104533 11.9630686014978 12.2999659789743 11.826770626197 11.947101011075 12.3200316878141 12.0258291502797 11.6249385014041 12.1861751213463 11.8796182997252 0.0737260475053818 0.0737260475053818 0.0753412969425914 0.0765459231801843 0.0795503037715727 0.0741531978054447 0.0756439843792111 0.0760570917641857 0.0870630602158301 0.0737260475053818 0.0786190765159507 0.074476454291332 0.0747418937348293 0.0785546057097451 0.0809690284816303 0.0739739800074267 0.0800362029988459 0.0749782718755418 0.07440006428387 4 4|0 -|/ 5777528 5778340 5777862.111 5777394 5779459 - gene protein_coding_gene FALSE TRUE AT4G09010.1 APX4 (ASCORBATE PEROXIDASE 4); peroxidase Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to Putative L-ascorbate peroxidase 4, chloroplast precursor (EC 1.11.1.11) (Thylakoid lumenal 29 kDa protein) (TL29) (P29) (AtAPx07) (APX4) [Arabidopsis Thaliana] (GB:P82281;GB:Q7XZP6;GB:Q9M0S6); similar to APX5, L-ascorbate peroxidase/ peroxidase [Arabidopsis thaliana] (TAIR:AT4G35970.1); similar to Putative L-ascorbate peroxidase, chloroplast precursor (Thylakoid lumenal 29 kDa protein) (TL29) (P29) (LeAPx09) (GB:Q9THX6); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.20542387289464 -2.42232038625616 0.0340900794125180 1 1.72439167527573 23.0169367192043 -0.20542387289464 0.0412570157904915
AT3G14980_at 4.69156772553052 4.59675458845339 3.68385668580886 3.74927730446944 4.40826160975527 4.52031647281675 3.78094043021413 4.04995254654805 4.43348720672210 5.23877991785732 4.52509114794059 5.15233758320327 4.57178091518827 4.96635554383409 4.9389347803067 4.46814799014373 4.52511305908986 5.02957924386304 5.34682501662348 0.216911673430971 0.218153792933537 0.214835002444944 0.211823167220458 0.228716804353044 0.230301677600154 0.212338058177881 0.221265784644669 0.222047645549331 0.216542192311483 0.208825006792657 0.209743476364197 0.213556518047014 0.223261286242037 0.212786587676393 0.213917237149796 0.221525167975550 0.217915529673971 0.210665383882822 3 3 - 5039952 5040524 5040255.818 5039938 5044818 - gene protein_coding_gene FALSE TRUE AT3G14980.1 PHD finger transcription factor, putative similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G05380.1); similar to Os04g0433900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052839.1); similar to PHD finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83629.1); similar to OSJNBb0020J19.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE05777.2); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.211786159297689 -2.42185832547533 0.0341178846852592 1 1.72368291060284 9.07438171045646 -0.211786159297689 0.0542280531848725
AT3G09310_at 2.669422329888 2.94567385693632 2.81764328542292 2.36318625992635 2.62161782348211 2.64605433740265 3.28306661066162 3.10276812193490 2.76321074486068 2.83966669770698 2.77749521556555 2.9648312638652 2.91364569320955 2.66931300555737 2.89301896731367 3.00845601041175 2.48973352693655 2.9199763191273 3.17780766601334 0.181359385819394 0.185052628960249 0.184512424348966 0.177500760225207 0.175331969219198 0.182296056473859 0.178084774678573 0.182713553260695 0.177970834860856 0.177219878247161 0.179576797914769 0.181180466210863 0.173313427922407 0.178793446641880 0.173244702167366 0.175209170876962 0.183759488143841 0.177165928707252 0.178141208783426 3 0|3 /|- 2860683 2860849 2860771.3 2860408 2861365 - gene protein_coding_gene FALSE TRUE AT3G09310.1 Identical to UPF0161 protein At3g09310 [Arabidopsis Thaliana] (GB:Q9SR32); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD20081.1); contains InterPro domain Protein of unknown function DUF37; (InterPro:IPR002696) -0.242721794621002 -2.42184305219113 0.0341188041573988 1 1.72365948311132 5.68440597142788 -0.242721794621002 0.0972731602455835
AT2G32370_at 1.07121635769107 1.19380982392801 1.15116301644275 1.31179662919136 0.958873432372538 1.15564404314204 1.18345246080416 0.92451068966214 1.58064897584389 1.70445875489391 0.732193552227827 0.582197679178402 0.938476823633857 1.60222793534325 1.11740537116809 1.17739051332623 1.16370274583209 1.26136216153578 1.39802690034095 0.227491140624869 0.227863777628722 0.227491140624869 0.233362095689911 0.227491140624869 0.236611067413642 0.227491140624869 0.239903771586277 0.22833676099227 0.230853688403277 0.22859944878813 0.231411975267677 0.235166526088818 0.231933386966687 0.235742382982188 0.227619776676781 0.236264464876468 0.231997396513733 0.230882676265545 2 2|0 +|/ 13752204 13752890 13752698.333 13749485 13753363 + gene protein_coding_gene FALSE TRUE AT2G32370.1 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05230.2); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeobox protein (GB:AAB37230.1); similar to Roc1 [Oryza sativa] (GB:BAB85750.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.219026665989865 -2.42169220505877 0.0341278866526968 1 1.72342810244214 2.43526554405773 -0.219026665989865 0.0662602397855889
AT3G20970_at 5.62310123357252 6.1968763090361 6.07795808475675 6.0144951583655 6.55935192274711 6.2073611412954 6.65265835993369 6.9030718893301 4.81113037079622 5.18572197325495 5.60166080570408 5.69490184857742 5.41906671740766 5.35391245401888 6.26370382993784 5.75334798904212 5.2836224778367 5.56821371668772 4.85706702163599 0.224120974179813 0.201186039624848 0.212317862241394 0.211317831635904 0.212523532943832 0.212305331830737 0.204858792922428 0.201901539203215 0.215343375148718 0.202855789179626 0.203814799183823 0.204029265815103 0.204854517335997 0.207537867983075 0.205974329968232 0.201186039624848 0.217789697381325 0.202835544610676 0.211601311373011 3 3|0 +|/ 7348697 7349769 7349004.3 7348203 7350311 + gene protein_coding_gene FALSE TRUE AT3G20970.1|AT3G20970.2 NFU4 (NFU domain protein 4) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion. Identical to NifU-like protein 4, mitochondrial precursor (AtNfu4) (AtNfu-III) (NIFU4) [Arabidopsis Thaliana] (GB:Q9LIG6); similar to NFU5 (NFU domain protein 5) [Arabidopsis thaliana] (TAIR:AT1G51390.1); similar to Os05g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054690.1); similar to hypothetical protein UM04972.1 [Ustilago maydis 521] (GB:XP_761119.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) 0.268430951747793 2.42142508747211 0.034143975560042 1 1.72301838534721 11.5636643549449 0.268430951747793 0.124773471834576
AT3G43920_at 2.41164327740715 2.18454126412008 1.75629014931292 1.94003293848400 2.37584874659160 1.81549867106446 1.92164037086179 2.11630131522861 2.78509338376783 2.35437840064752 2.2954073420484 2.13248892750271 2.26074611594462 2.05944962050399 2.23298992709796 2.45437694418846 2.21708553397315 2.60939088117274 2.69853668714578 0.213812961236713 0.211698268192647 0.216935742903009 0.210472095214446 0.210059470191364 0.212604938967780 0.212849421446533 0.216755282051712 0.218876447759883 0.210622654100788 0.210611917516995 0.215265272598533 0.217544899621047 0.210059470191364 0.219482403289958 0.212114998905333 0.218886475403062 0.226140792731176 0.218780498094435 3 3 + 15771000 15771785 15771437 15764535 15771817 + gene protein_coding_gene FALSE TRUE AT3G43920.1 DCL3 (DICER-LIKE 3); RNA binding / ribonuclease III Encodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation. similar to DCL1 (DICER-LIKE1), ATP-dependent helicase/ ribonuclease III [Arabidopsis thaliana] (TAIR:AT1G01040.1); similar to Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Type III restriction enzyme, res subunit; Ribonuclease III, bacterial [Medicago truncatula] (GB:ABE81761.1); similar to dicer-like protein [Oryza sativa (indica cultivar-group)] (GB:ABB20894.1); similar to putative RNA helicase [Oryza sativa] (GB:AAL59041.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) -0.258270754753766 -2.42110255140072 0.0341634122521315 1 1.72252367838766 4.51293029267102 -0.258270754753766 0.11442850541852
AT3G16260_at 6.30567963639963 6.62627118754939 6.04362709837525 5.89792480406759 6.54315462310196 6.03709982554768 6.35648387220672 6.29084210730951 5.67793619506879 6.75057730785626 6.11350302238215 6.45189412801371 6.2456005471411 6.01890575659208 6.24495717890421 6.6940380512642 5.88205971793797 5.88111191267914 6.86222465207267 0.226380513783678 0.221511408599567 0.221123275148857 0.228813256227298 0.221169245010841 0.226169785053094 0.216039878454764 0.226305047812948 0.237284997279658 0.228882195549161 0.217610914362938 0.215685247160236 0.222054447070211 0.221096649549328 0.225713158516285 0.218813549460267 0.223561897625288 0.223979522370321 0.221381727984833 3 3|0 +|/ 5512448 5513100 5512746.8 5509380 5513210 + gene protein_coding_gene FALSE TRUE AT3G16260.1 catalytic similar to metallo-beta-lactamase family protein [Arabidopsis thaliana] (TAIR:AT1G52160.1); similar to unnamed protein product; gb|AAF29402.1 gene_id:MYA6.7 strong similarity to unknown protein-related [Medicago truncatula] (GB:ABE80923.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) -0.251552437697389 -2.42077803628567 0.034182979078496 1 1.72202595090799 12.5735128148348 -0.251552437697389 0.107295063954414
AT1G34500_at 0.87631045677034 1.46829213659914 1.00048979401973 1.19218441739911 1.04215107792172 0.953494500315436 1.13814438200599 1.16454125919531 1.56142280447864 1.29212144758071 0.662212237523006 0.985089243002208 0.691685432621346 1.30897172756663 0.59075690898098 0.648883235154737 0.897086061800078 1.67201263025742 1.11623766258035 0.216225418078363 0.216007792959265 0.223073108287362 0.224003259846712 0.217863813848952 0.226236961058332 0.218694284715302 0.216018763016923 0.216731035516385 0.225260054813339 0.218269872238231 0.225853445276669 0.229138956906005 0.221614306409100 0.216057219247352 0.222766518894761 0.222211054376140 0.225120400876087 0.217290716469849 1 1 + 12612063 12612617 12612408.545 12611616 12612641 + gene protein_coding_gene FALSE TRUE AT1G34500.1 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related similar to membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related [Arabidopsis thaliana] (TAIR:AT5G55350.1); similar to wax synthase isoform 1 [Vitis vinifera] (GB:AAO18664.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) -0.252957782414313 -2.42035381117453 0.034208574433687 1 1.72137531510177 2.23212491444161 -0.252957782414313 0.108865815966962
AT1G70990_at 1.37015421794327 1.64842303928421 1.88142419249001 1.91413843396131 1.84106776643054 1.68166333109170 1.37161786665453 1.09699316666550 1.80193571962649 2.08641931111878 1.58473799056131 1.75341700331316 1.83405947564620 1.82914097327621 1.99470332122359 1.54907991761719 2.05828759835077 1.70629049205287 1.50915378538584 0.20574599545696 0.203873603343770 0.205531891626274 0.208792638513368 0.201951235934402 0.208826580159132 0.205179606363118 0.216494651084356 0.229310333289340 0.209089102277841 0.211255978266946 0.202991369046909 0.209659248047622 0.206321554762855 0.208992694136539 0.204753184180396 0.205889060569516 0.211196409539499 0.206902780375135 1 1 - 26771204 26771564 26771381.727 26770959 26771738 - gene protein_coding_gene FALSE TRUE AT1G70990.1 proline-rich family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G23040.1); similar to Os01g0594300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043463.1); similar to extensin precursor-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91812.1) 0.223660674742319 2.42019791559368 0.0342179849834418 1 1.72113622385115 3.39462735275623 0.223660674742319 0.0732845654245682
AT1G53580_at 8.9198782225936 9.1937491203817 9.19614237867234 9.37308690259118 9.35308577435723 9.41983359520325 8.55592586287698 9.09788253826416 8.34803356006958 8.65897256747118 8.1860432732619 8.62659586588797 9.11947179893022 8.61324825471663 8.07357945194787 8.58005816923728 9.13586483563796 8.76998783287728 8.56403273672744 0.151238195501970 0.147780665998577 0.149110202456568 0.151419367859142 0.149856139752355 0.144894437786548 0.150208482595693 0.151615091741181 0.164072348865300 0.144424790076377 0.149692671530460 0.150890157075291 0.143555496655919 0.152052980606779 0.160942384068205 0.149447390467622 0.155952704195676 0.155712478253565 0.145478424804423 1 1|0 -|/ 19995214 19996345 19995814.667 19994943 19997002 - gene protein_coding_gene FALSE TRUE AT1G53580.1|AT1G53580.2 ETHE1/GLX2-3 (GLYOXALASE 2-3); hydroxyacylglutathione hydrolase Identical to Putative hydroxyacylglutathione hydrolase 3, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLY3) [Arabidopsis Thaliana] (GB:Q9C8L4;GB:Q93VR2;GB:Q96332;GB:Q9LPH3); similar to GLX2-2 (GLYOXALASE 2-2), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT3G10850.1); similar to hypothetical protein LOC405865 [Danio rerio] (GB:NP_998094.1); similar to Os01g0667200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043807.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.254052395283149 2.42018972708588 0.0342184793478153 1 1.72112366553728 17.719590952735 0.254052395283149 0.110061533949270
AT1G64430_at 6.70227819176601 6.51000697379281 6.49703871125499 5.52537344024507 7.03576047811465 6.69819947619045 7.32159839587519 7.25612199174958 7.37844473424708 7.309509481149 7.3147043755187 7.46203409792013 7.15541933755687 7.23878652057592 7.38765346941705 7.72205521582072 7.05115295672063 6.97838880075228 7.6369142282711 0.201090806327285 0.185318576900792 0.215589071675780 0.207489579712032 0.188481527450599 0.200565174890789 0.185752233964855 0.194388274413224 0.19545028320965 0.183127486171474 0.184457633591667 0.183127486171474 0.184612645808497 0.198995740922234 0.189302529491098 0.183127486171474 0.207114406539956 0.20411048932396 0.184657422198600 1 1|0 +|/ 23938788 23939968 23939152 23937043 23940530 + gene protein_coding_gene FALSE TRUE AT1G64430.1|AT1G64430.2 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01686.1); similar to Os08g0332700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061569.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.330628414807522 -2.41981247238695 0.0342412628689751 1 1.72054509883222 14.0584957880441 -0.330628414807522 0.181446491274137
ATCG00330_at 10.7014154192323 11.0768580013915 10.9147954592844 11.4874239555443 9.6651737556524 10.2588645186998 10.3589059256791 11.4292722635322 11.4634824314784 11.7415654565032 11.1603007778081 11.6558657631198 11.2471278381570 11.3412277537336 10.5168169672131 11.5472518127241 10.2235857474792 11.5637411926285 11.7741320078423 0.0977048886391014 0.101202788596153 0.101307247690685 0.100090366817683 0.102959362117019 0.103778414049835 0.0970248940476887 0.10186473098718 0.097510045157895 0.0962978361004096 0.102404914075418 0.0972518217204952 0.0984444424529854 0.103663947825724 0.103489004012538 0.096522076963668 0.118407266481994 0.0997546661689881 0.0962978361004096 C C - 36959 37161 37047.273 36938 37240 - gene protein_coding_gene FALSE TRUE ATCG00330.1 30S chloroplast ribosomal protein S14 similar to ribosomal protein S14 [Gossypium hirsutum] (GB:YP_538933.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) -0.406392690248455 -2.41912467070793 0.0342828392527376 1 1.71949032225241 22.1449468441516 -0.406392690248455 0.24270960381725
AT3G19220_at 4.79331651560397 4.63933050035067 4.65327658676661 4.46906210604362 4.61665512678628 4.84164648439133 4.393644462553 5.0716248575127 3.84583800818682 3.94166391923891 4.08319164557562 4.21923391765718 4.52377073154719 4.71152298281995 4.67141691495525 4.37116636226405 4.70732116083486 3.74458724117341 3.46834692623597 0.200690920312285 0.207868645938073 0.204740994114201 0.205379315308027 0.216051751689972 0.209940274528778 0.207345364545161 0.205764066620001 0.213820982468138 0.200690920312285 0.214677362278537 0.203949204987049 0.206186987633807 0.203030119961278 0.205905883768107 0.208596120334686 0.200690920312285 0.204337651432232 0.203171897516436 3 3 + 6659215 6660202 6659476.818 6659170 6660858 + gene protein_coding_gene FALSE TRUE AT3G19220.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80527.1) 0.273878871854039 2.41902700476947 0.0342887469680205 1 1.71934055237337 8.75030757374636 0.273878871854039 0.130415399417487
AT2G30120_at 2.67903633869081 2.87896846372055 3.3799634454072 3.07480654963968 3.51131385787504 2.83514448698048 3.53088384205177 3.39399932924468 2.57031210581870 2.3363566227969 3.06388238182439 2.91145524852759 3.09829887439320 3.41378979659076 2.97051669305344 3.00092885669864 2.66903928596017 3.00941387756211 2.71170476358214 0.193978684739873 0.191642802411686 0.193615446269902 0.193964662297347 0.191995263972374 0.190721396915774 0.2050092761769 0.190721396915774 0.190721396915774 0.200223614313060 0.195365122240215 0.196330722650832 0.198038985012575 0.197170989386580 0.193074990719756 0.194839966764078 0.201854060016936 0.194709775066146 0.199359442262076 2 2 - 12868504 12868908 12868729.636 12867618 12868987 - gene protein_coding_gene FALSE TRUE AT2G30120.1 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14750.1); similar to transglutaminase [Zea mays] (GB:CAD13455.1); similar to Os03g0818000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051704.1); similar to transglutaminase [Zea mays] (GB:CAD32336.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) 0.278646443821179 2.41880530048018 0.0343021613183532 1 1.71900057581044 5.93882626798071 0.278646443821179 0.135053169475749
AT3G61740_at 3.88888703014494 3.12625685698907 3.41519087800641 3.13720942503003 3.44648333758076 3.34696259178754 3.43661353159354 3.7560322990975 3.34792092457611 3.66114209143071 2.93026981400201 3.29728426362196 3.79713655465534 3.04441862514641 3.39104005567938 3.41045306158168 3.28410901141032 3.04452006304635 3.94966732596303 0.204051985144005 0.205217070341848 0.202350793100282 0.203155044907941 0.209256986074110 0.210888058716954 0.213200120487456 0.201078728807344 0.209954183763711 0.206877531323547 0.214990509647960 0.205058359098827 0.204043358684915 0.202561177091265 0.198970656236628 0.198970656236628 0.208904780228653 0.210261395695667 0.207568097783241 3 3 - 22862118 22863195 22862751.182 22861812 22867947 - gene protein_coding_gene FALSE TRUE AT3G61740.1|AT3G61740.2 DNA binding| similar to PHD finger protein-related / SET domain-containing protein (TX4) [Arabidopsis thaliana] (TAIR:AT4G27910.1); similar to SDG29 (SET DOMAIN GROUP 29), DNA binding [Arabidopsis thaliana] (TAIR:AT5G53430.1); similar to Histone-lysine N-methyltransferase ATX4 (Trithorax-homolog protein 4) (TRX-homolog protein 4) (Trithorax 4) (Protein SET DOMAIN GROUP 16) (GB:Q9SUE7); similar to PWWP; Nuclear protein SET; SET-related re (GB:ABE82747.1); similar to PWWP; Nuclear protein SET; Zinc finger, RING-type; Protein kinase C, phorbol ester/diacylglycerol binding; SET-related re (GB:ABE80834.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain PWWP; (InterPro:IPR000313) -0.296746027101048 -2.41872828158705 0.0343068225880801 1 1.71888247140306 6.90811151634516 -0.296746027101048 0.151934819893246
AT4G27490_at 3.03680163892421 2.29839126252406 2.36559400741053 2.23361082515129 2.3707001681055 2.1604653776281 2.96351300069584 2.69605074756054 1.75483859063568 2.39306930795866 1.8020512960611 2.23520133468509 2.24125662145827 1.83604857236215 1.97919609997965 2.08704338067919 2.55858976644749 1.56558809787538 2.28724618181195 0.25496099219217 0.269877609743117 0.25496099219217 0.260284692626807 0.25496099219217 0.262195362065286 0.258519207310123 0.283290139752349 0.264999483852465 0.25496099219217 0.25496099219217 0.26389010512438 0.260788285520129 0.255167627682199 0.256689726165422 0.255377675108394 0.267714355238971 0.25496099219217 0.25496099219217 4 4|0 +|/ 13740903 13741619 13741185.333 13739812 13741809 + gene protein_coding_gene FALSE TRUE AT4G27490.1 3' exoribonuclease family domain 1-containing protein similar to RRP41 (Ribosomal RNA Processing 41), 3'-5'-exoribonuclease/ RNA binding [Arabidopsis thaliana] (TAIR:AT3G61620.1); similar to putative exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:AAS07363.1); similar to Os08g0116800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060856.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247) -0.286513015897099 -2.41847902807813 0.0343219119172421 1 1.71850026012296 4.60722750666449 -0.286513015897099 0.142536982920869
AT4G01050_at 11.0756571331840 11.1844013571256 10.7152773461625 10.7329807514022 11.1229259543228 10.7869875195575 11.5293211895665 11.5226271884612 11.6837845904464 11.7520934082177 11.9249924680614 11.9797470369452 11.7138492953288 11.6624986480847 11.8768431191731 11.8113887954334 11.3451963691727 11.6812128838698 11.6399000575972 0.073818585108132 0.0714132829869305 0.0727065067804659 0.0731192785822253 0.0721682752268405 0.0746017894946389 0.0723579898232518 0.0711648630154467 0.073344572921311 0.0764786278570174 0.0736344012058858 0.0708293205858658 0.070644500253599 0.0772950808651046 0.071942552371654 0.0701360325742605 0.0723016948207311 0.0700832762071675 0.0705993309210614 4 4 + 457161 457906 457595.727 455768 458510 + gene protein_coding_gene FALSE TRUE AT4G01050.1 hydroxyproline-rich glycoprotein family protein hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Identical to Putative protein At4g01050 [Arabidopsis Thaliana] (GB:Q9M158;GB:O04623;GB:Q93VZ2); similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G25480.1); similar to Os02g0257300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046473.1); similar to rhodanese domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82378.1); similar to Os01g0889800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045047.1); contains domain CHITINASE (PTHR11177:SF3); contains domain Rhodanese/Cell cycle control phosphatase (SSF52821); contains domain CHITINASE (PTHR11177); contains domain no description (G3D.3.40.250.10) -0.215459382984107 -2.41758943205181 0.0343758190522089 1 1.71713620490747 22.804468352854 -0.215459382984107 0.0611934011797708
AT2G30160_at 4.24144541534338 4.8540625225020 4.41759258844521 4.27122311551527 4.50513104676843 4.55265877308330 4.75954250660912 5.4794097943533 4.17973497825995 4.20412434777089 3.75114009069541 3.75418419410462 4.44509348886234 3.98589759380279 3.6781821616678 4.26357032955636 3.69026062061129 4.00107179031376 4.13619052584046 0.237832666698652 0.238749614623842 0.239571149267292 0.240067082047896 0.244192236683573 0.244290471203364 0.237983260051301 0.237832666698652 0.247974537187271 0.242598514588063 0.241126920207467 0.237832666698652 0.242899761805111 0.238954432927498 0.247486207772437 0.239899580157655 0.259653689520719 0.238395282753816 0.237832666698652 2 2 + 12885499 12886375 12885812.818 12884915 12886726 + gene protein_coding_gene FALSE TRUE AT2G30160.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT1G07030.1); similar to Mitochondrial carrier protein [Ribes nigrum] (GB:CAA07568.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.312069297835437 -2.41750302015628 0.0343810597713204 1 1.71700371193937 8.69489571249028 -0.312069297835437 0.165734654755690
AT1G05310_at 4.48269950808529 5.13024074526396 2.03581295378728 2.27178468810249 5.00684469104268 5.24932838235059 3.39727744714837 3.42316444674019 3.22292116111824 2.79753141660214 3.05752572615796 3.39294859936851 2.90602776841871 2.29388485165661 3.19177164351569 2.87302168159898 2.76647117612274 3.66718712162292 3.25096477392382 0.258557404498938 0.271936892215522 0.25412829730231 0.253904660317717 0.253999259666526 0.26026974889708 0.250523119223967 0.251656343260927 0.2580874148757 0.253613619310444 0.24850936471111 0.253848921957072 0.248839557162510 0.252366185932722 0.251634160185637 0.250025144727660 0.263591975943749 0.249492650454615 0.253463627911598 1 1|0 -|/ 1550867 1551365 1551048.3 1550542 1552516 - gene protein_coding_gene FALSE TRUE AT1G05310.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G36710.1); similar to Os05g0521600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056077.1); similar to pectin methylesterase precursor [Physcomitrella patens] (GB:CAH58712.1); similar to Os09g0571100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063991.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.269635243739498 -2.41652499267123 0.0344404295438002 1 1.71550420420592 6.92918274361802 -0.269635243739498 0.126514770745223
AT1G27360_at 3.85634359721546 3.5317183105968 4.02048258013357 3.31981054754518 4.01132604313700 3.25773167148601 5.47523245187761 4.09170842792227 4.53532117600766 4.56451395002633 4.12225699533237 4.69349369937516 3.97591472382441 4.20635729094491 3.74573057319469 5.33634266660827 4.59419763765396 3.64865744003324 4.92820318627344 0.207835042699003 0.201177322067675 0.202781111070599 0.19762994602792 0.202241220906017 0.202450672815410 0.19762994602792 0.203983851028026 0.203585889031911 0.199002469318135 0.199926044552634 0.19762994602792 0.19762994602792 0.200359188614728 0.205946282471209 0.201354119028568 0.201977321799920 0.214105838141390 0.213706148323903 1 1 + 9502737 9503646 9503338.273 9501064 9503856 + gene protein_coding_gene FALSE TRUE AT1G27360.1|AT1G27360.2|AT1G27360.3|AT1G27360.4 squamosa promoter-binding protein-like 11 (SPL11) Identical to Squamosa promoter-binding-like protein 11 (SPL11) [Arabidopsis Thaliana] (GB:Q9FZK0;GB:Q9ZW54); similar to squamosa promoter-binding protein-like 10 (SPL10) [Arabidopsis thaliana] (TAIR:AT1G27370.4); similar to putative squamosa promoter binding protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD10252.1); similar to Os06g0703500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058499.1); contains InterPro domain SBP; (InterPro:IPR004333) -0.486028439362932 -2.41640156122340 0.0344479293631883 1 1.71531496938553 8.42873502830925 -0.486028439362932 0.303629133496497
AT3G11945_at 9.2899827250211 9.40720166843628 9.0652586091975 8.9917561801956 8.93245035195445 8.53085969473529 9.92559223910972 9.93299963763504 9.60445242014847 9.4112768433108 9.72812743943896 9.83483053014596 9.4860320098118 9.75261224052944 9.97819970198712 9.9464773537074 9.31506926784724 9.84131418649169 9.254381164198 0.110820321351365 0.10926915276029 0.124523932506852 0.122123694987573 0.110641236878172 0.121881128289961 0.121339798589537 0.116152089879124 0.118080597909902 0.108043350815884 0.110880834061403 0.108043350815884 0.108043350815884 0.110598740460563 0.113071229505465 0.108043350815884 0.122615934647724 0.111456939379011 0.117989819361259 3 3|0 -|/ 3780053 3781462 3780827 3779845 3782960 - gene protein_coding_gene FALSE TRUE AT3G11945.1 prenyltransferase similar to HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1), prenyltransferase [Arabidopsis thaliana] (TAIR:AT2G18950.1); similar to homogentisate phytyltransferase VTE2-2 [Glycine max] (GB:ABB70128.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) -0.223450079918648 -2.41614358510714 0.0344636093861400 1 1.71491946895793 18.8388641301843 -0.223450079918648 0.0735172413302038
AT4G02620_at 10.2061432810410 10.1912019334780 10.3224798379141 10.4370941043164 10.4517245382076 10.1283570467683 10.4087357304396 10.4984379757006 9.96081186477052 9.97443290516747 10.4532711731431 10.3929489887326 10.0991674472979 10.4426495332779 10.3189965951064 10.0681867335218 10.2627320201321 10.3475408122245 9.6929429006222 0.116504419862998 0.107007411720196 0.111504767370688 0.109795432660790 0.111836493553019 0.110777313538566 0.114730016219936 0.109567326586045 0.115333934005032 0.106176769240080 0.106176769240080 0.113174698621166 0.110467987622589 0.113243119492030 0.113795736376762 0.110887959358980 0.112748013050492 0.106428235773804 0.111292630388721 4 4|0 -|/ 1149436 1151107 1149990.444 1149248 1151346 - gene protein_coding_gene FALSE TRUE AT4G02620.1 (VACUOLAR ATPASE SUBUNIT F); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism Identical to Probable vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit) (VATF) [Arabidopsis Thaliana] (GB:Q9ZQX4); similar to Os02g0824700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048577.1); similar to putative vacuolar ATP synthase subunit F [Musa acuminata] (GB:ABC60334.1); similar to Os04g0137500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052104.1); contains InterPro domain ATPase, V1 complex, subunit F, eukaryotic; (InterPro:IPR005772); contains InterPro domain ATPase, V1/A1 complex, subunit F; (InterPro:IPR008218) 0.215454128856468 2.41596622620340 0.0344743934512269 1 1.71464756747385 20.4176464158747 0.215454128856468 0.0614216570880845
AT4G28030_at 9.41665957683823 9.55108792297858 9.31670650048603 9.2000108151904 9.3273928754609 9.19986408880638 9.56712914141298 9.6189684529845 9.66374735885489 9.76822904572616 9.58019604876383 9.71722826544896 9.49997693240782 9.64398957743238 9.68461797030732 10.0280126850302 9.343989212838 9.51503645451042 9.83866543538928 0.0995472224019431 0.0961756738575782 0.101499813531489 0.100021338991777 0.095858309293114 0.09892332628203 0.10055929680554 0.099947740066062 0.109333109403862 0.0994612053805724 0.0977107948787837 0.095858309293114 0.100691561974035 0.0966726927587529 0.101386154695150 0.0979768715139251 0.101297881682059 0.103791443943925 0.0982808066519667 4 4|0 -|/ 13937797 13938888 13938291.4 13937682 13939150 - gene protein_coding_gene FALSE TRUE AT4G28030.1|AT4G28030.2 GCN5-related N-acetyltransferase (GNAT) family protein|N-acetyltransferase similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G06025.1); similar to Os08g0260000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061388.1); similar to Predicted N-acetyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55572.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.203858711774361 -2.41534782638561 0.0345120201016407 1 1.71369956013458 19.0914831751026 -0.203858711774361 0.0389429785444241
AT2G22270_at 3.05401027814080 2.57232371691110 2.63524584596731 2.87603300345997 2.62203524039739 3.08604431654944 2.74206612511141 2.6357979562779 2.95476882504647 2.7323361594183 3.40911370824408 3.01582974029153 3.46280825933912 3.45002951902267 3.31049195613171 3.08716260635724 3.41818017483968 3.10641361576561 2.71764107005232 0.185160534324338 0.185321371881412 0.185639624907378 0.187012899983737 0.193949413683008 0.191497130649547 0.193005743706536 0.196239793693657 0.192694356066500 0.188445168655796 0.187689266270395 0.191173611437979 0.188579885545519 0.185432208882249 0.190421414547145 0.182186928635251 0.189522330637259 0.187222326785715 0.188126566045597 2 2 + 9471708 9472327 9471994.727 9470774 9472547 + gene protein_coding_gene FALSE TRUE AT2G22270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39860.2); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os02g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047207.1) 0.267355880904912 2.41524802010291 0.0345180965781651 1 1.71354656220162 5.81998741818757 0.267355880904912 0.124382580033109
AT4G18375_at 2.03855337338754 2.07914627901522 1.45441862544564 1.42924381634886 2.0660500795542 1.68861398719164 1.90652575102002 2.14214925782131 1.97140267789177 2.25071161959038 2.13337856404419 2.30341327262305 1.93852919546309 2.49938213907865 2.23861676110202 2.37151346251245 1.56413414389065 1.90320269079341 2.34606685335063 0.184962935005906 0.184040658759504 0.190453740646006 0.192436256591754 0.186905884200813 0.191391504478077 0.194823154279452 0.182962881966958 0.191138556698931 0.192804893827015 0.187481968601461 0.190900809137067 0.201804264880158 0.188652474416365 0.196158967450057 0.185071849157854 0.198703681406803 0.190981074411234 0.196255237664974 4 4|0 +|/ 10154413 10155065 10154700.4 10152499 10155304 + gene protein_coding_gene FALSE TRUE AT4G18375.1|AT4G18375.2 KH domain-containing protein Identical to Probable nucleic acid-binding protein At4g18375 [Arabidopsis Thaliana] (GB:P58223;GB:O49507;GB:Q8H0Y7); similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G46190.1); similar to Os08g0200400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061211.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE79454.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.226192238215878 -2.41523328800199 0.0345189935965183 1 1.71352397876515 4.0047951440394 -0.226192238215878 0.0774422996128193
AT1G43770_at 4.80918709558658 4.64156192706279 5.16652856163569 5.41800159224567 5.12962452401077 4.68717301836719 4.46102015261766 4.38836099074853 4.21301327001435 4.02896773285849 4.01598856127356 3.44871546473679 4.17782337591298 4.01890532601366 3.67240716390273 4.19373098269895 4.13280748918689 4.11150074505534 3.81493856781064 0.253880505004417 0.246762504087764 0.255795287546722 0.254589096637589 0.247995343663466 0.244956817445550 0.250299250385123 0.252591207576068 0.250046754515601 0.243320789148297 0.243320789148297 0.250126802013035 0.250072400290590 0.243724992073658 0.243320789148297 0.243320789148297 0.250748584950531 0.24543767946682 0.246380974721152 1 1 + 16551939 16552671 16552309.455 16550881 16552991 + gene protein_coding_gene FALSE TRUE AT1G43770.1 PHD finger family protein similar to PHD finger protein-related [Arabidopsis thaliana] (TAIR:AT3G02890.1); similar to Os11g0160100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065815.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95456.1); similar to Os12g0161900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066221.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.238905540465363 2.41516712938917 0.0345230221876347 1 1.71342256192363 8.83291127219708 0.238905540465363 0.0935743502475276
AT1G24400_at 3.7829663140663 4.07156983311739 4.24492747423277 3.54143214744649 5.06726728614132 3.76947234151175 3.87897343538147 3.07960100891434 3.80721449532211 3.32049017678445 3.37680927661743 3.46970445183772 4.00925284640634 3.96747728718529 3.48579814410139 3.93675623620500 3.96500020199179 3.77094753265971 2.62974334365184 0.214874265267361 0.213771264787425 0.214499903677646 0.212966002555498 0.209850917874453 0.228419471459178 0.207343021740522 0.211199262810359 0.207539660701750 0.211471091723725 0.206638981221793 0.208779587948575 0.214509246880732 0.212301888298989 0.211320513871220 0.206954418267960 0.234478838304057 0.206114509369375 0.219020248684325 1 1|0 -|/ 8651577 8652489 8652070.5 8651396 8653817 - gene protein_coding_gene FALSE TRUE AT1G24400.1 LHT2 (LYSINE HISTIDINE TRANSPORTER 2); amino acid permease High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.2); similar to lysine and histidine specific transporter, putative [Arabidopsis thaliana] (TAIR:AT1G67640.1); similar to lysine and histidine specific transporter, putative [Arabidopsis thaliana] (TAIR:AT1G48640.1); similar to Os12g0244400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066488.1); similar to Os08g0127100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060901.1); similar to histidine amino acid transporter [Oryza sativa (indica cultivar-group)] (GB:CAD89802.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.473866369834663 2.41477422040908 0.0345469569930197 1 1.71282027107790 7.429626689624 0.473866369834663 0.294775934927653
AT1G07030_at 4.3354053160219 4.45355993889883 4.6185318742256 4.6881945550378 4.31210277010796 4.15842873915415 4.01317928092133 4.00643850201183 3.09544955008532 3.09165176145016 2.76686629107844 3.35215275990049 3.15777023479089 3.16051797634748 3.31124751874848 3.53067433654316 3.8619932261324 3.09522058017187 3.16297243768616 0.220725639797195 0.214969239308019 0.219874015369259 0.216052457960489 0.219241207134146 0.218968327619588 0.217796269991148 0.216734832458371 0.221207180907274 0.227519206791000 0.219239141874091 0.21892179740804 0.221616306158544 0.224749633655488 0.214969239308019 0.214969239308019 0.216228803357167 0.217051783432057 0.227402950330712 1 1 - 2158692 2160117 2159733.727 2158419 2160808 - gene protein_coding_gene FALSE TRUE AT1G07030.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G30160.1); similar to Mitochondrial carrier protein [Ribes nigrum] (GB:CAA07568.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.202516420445756 2.41472813413062 0.0345497654852603 1 1.71274962680318 7.52135342964977 0.202516420445756 0.0356654493972889
AT2G40460_at 6.54855521140058 6.99008769538024 8.12097042372243 7.87917146058672 7.50605168313847 6.94551353042675 8.85812435695303 8.67035124029199 6.81900050293822 7.39299565636413 7.59410725438618 7.40251436338277 8.26218406462183 7.78147903452604 7.0067261573908 8.83102166314772 8.67020779731558 7.55981777518566 7.327223110133 0.203283821514824 0.197239321428011 0.196088862899457 0.199242244387892 0.199593048801975 0.195077700855482 0.204005170825065 0.199158766826261 0.207262220723560 0.195331122101088 0.205021862868397 0.196594624428105 0.190717692909375 0.200026572858714 0.199624409631654 0.200020514502178 0.196869777746064 0.194527298391791 0.196931883359096 2 2 + 16907650 16908225 16907915 16903985 16908358 + gene protein_coding_gene FALSE TRUE AT2G40460.1 proton-dependent oligopeptide transport (POT) family protein similar to ATPTR3/PTR3 (PEPTIDE TRANSPORTER PROTEIN 3), transporter [Arabidopsis thaliana] (TAIR:AT5G46050.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE86036.1); similar to peptide transporter [Lotus japonicus] (GB:AAB69642.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024) 0.277457327864128 2.41465709367310 0.0345540951174220 1 1.71264073161615 15.2239767103490 0.277457327864128 0.134368832466422
AT1G10650_at 6.9332273800779 7.23418186744876 7.07870830766977 7.29456125701565 7.49577878427757 6.93542667083812 8.30411919743494 8.27772861974893 6.83281994992663 7.25542382966835 7.235182227065 6.81281763674304 7.28416043552382 7.51270925212982 6.3458480309343 7.85607479553306 6.62066732619936 6.7186454862789 7.15397309507098 0.185832167826513 0.192690600466307 0.190327636499071 0.216049178048705 0.192999819283447 0.202645270026448 0.204205746377898 0.199305334893081 0.199467536457828 0.192138078581959 0.195745352058563 0.188935183416367 0.189711699095833 0.197496210200905 0.197093478763991 0.189368129561338 0.212505655178769 0.192633493996099 0.188921404056936 1 1|0 -|/ 3524129 3524783 3524408 3524019 3526347 - gene protein_coding_gene FALSE TRUE AT1G10650.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G60610.2); similar to Os02g0130300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045784.1); similar to putative S-ribonuclease binding protein SBP1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07738.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.259335660324213 -2.41405521931595 0.0345907981501722 1 1.71171817080243 14.5087175640754 -0.259335660324213 0.116327887299637
AT1G76090_at 4.99027386146363 5.63795356071935 3.67375086972411 3.96899895901867 4.83448819204234 5.00780091522038 3.00689764968396 3.20455587216263 7.59136996331931 3.11989787123943 7.95863535935302 5.47859024177242 4.9389393463649 5.78328728857627 7.12937815489251 3.69024950908814 2.8740045612727 4.55602334568007 4.03103793280225 0.266394430075896 0.257305233482778 0.257582770265407 0.257305233482778 0.263220422259841 0.275839610888704 0.259051471848730 0.262970676292758 0.274423099821801 0.257305233482778 0.257466098056674 0.257305233482778 0.257305233482778 0.257305233482778 0.261992887695173 0.257305233482778 0.263692945472501 0.265804147063564 0.260219976568445 1 1 - 28555529 28556041 28555852.455 28555303 28556675 - gene protein_coding_gene FALSE TRUE AT1G76090.1 SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3); S-adenosylmethionine-dependent methyltransferase Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. Identical to 24-methylenesterol C-methyltransferase 3 (EC 2.1.1.143) (24-sterol C- methyltransferase 3) (Sterol-C-methyltransferase 3) (SMT3) [Arabidopsis Thaliana] (GB:Q94JS4;GB:O23655); similar to SMT2 (STEROL METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT1G20330.1); similar to S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum] (GB:AAB62808.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Sterol methyltransferase C-terminal; (InterPro:IPR013705) 0.274188025707663 2.41364389029268 0.0346159033178366 1 1.71108771047516 9.39821018416872 0.274188025707663 0.131312631384515
AT3G15250_at 0.551535180936347 0.732788345666986 0.792967346190368 0.882765117062853 0.627390413293496 0.772636221435805 0.413275960240291 0.750033372752026 0.220407130971861 0.630860921839208 0.987145990922616 0.54748888716556 0.69504322215214 0.742946282590786 0.761031669389072 1.02631394008206 0.659187442958704 0.453892968027258 0.487609221132967 0.181293059943249 0.174164090924210 0.175605477717876 0.176514981782724 0.177527177940468 0.173726350503508 0.18286280907026 0.173227031985297 0.177772943638233 0.174390953916799 0.177279874861814 0.180684891183628 0.174430884050773 0.17775058321682 0.175191991535553 0.180598489429377 0.17966516801578 0.177861545236723 0.180672463456929 3 3 - 5136676 5137112 5136891.727 5136269 5137202 - gene protein_coding_gene FALSE TRUE AT3G15250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53163.1); similar to cement precursor protein 3B variant 1 [Phragmatopoma californica] (GB:AAY29120.1) 0.222435217679865 2.41303250798767 0.0346532513597467 1 1.71015066579736 1.28063585722679 0.222435217679865 0.0724804187636486
AT1G76250_at 0.557944645255388 0.843953984802872 1.00651096959828 0.802090260530796 0.765816958625273 0.779126132189537 0.851856521302898 0.755315610469045 0.785542752189146 0.721168629727296 1.28345488273805 1.44472541794025 0.464116273174798 1.16027174082091 1.50203954947681 0.907165958490846 1.09271765717481 1.07505796943724 0.802805476418536 0.2140470789146 0.204938402186840 0.210006228320886 0.207769647823815 0.203224525521407 0.204315132710390 0.212131079859979 0.208673847310489 0.216194048252554 0.206333710484549 0.207416275518474 0.207350188925337 0.211689081565472 0.216405869339963 0.203224525521407 0.212834245828707 0.213276552884006 0.203224525521407 0.206414221345429 1 1 - 28611655 28612016 28611847.727 28611344 28614022 - gene protein_coding_gene FALSE TRUE AT1G76250.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03819.1) 0.216236559078404 2.41288862057199 0.0346620468339671 1 1.70993014236609 1.73834320231428 0.216236559078404 0.0631320989603757
AT4G14190_at 5.17467278490153 5.0692976603639 5.01978752740397 4.50320961974516 5.49830250290738 5.42082699552853 5.59412147778764 5.16089495810833 5.11279609483755 5.52891986142563 4.49665055361081 4.59876332247009 4.41110349929802 4.81509897969356 4.95607584294766 5.05990171280762 5.37875891051193 5.01206812927555 5.03246280900021 0.169306779810379 0.172337015898815 0.173523962473227 0.172117895368446 0.169306779810379 0.173967516688062 0.169306779810379 0.181256268691998 0.182334521615847 0.174309365062069 0.169499036028677 0.169306779810379 0.182777724280788 0.171405815448466 0.177396787320083 0.169756041077024 0.182132747425602 0.182284898244301 0.177439721357567 4 4 - 8183695 8184090 8183917.909 8183539 8185182 - gene protein_coding_gene FALSE TRUE AT4G14190.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G42630.1); similar to pentatricopeptide repeat protein [Capsella rubella] (GB:ABA18107.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.261444347577491 -2.41103527674813 0.0347755314321990 1 1.70708995597607 10.2130286278007 -0.261444347577491 0.118847654103852
AT3G51910_at 2.15721719264989 2.40395104019336 1.32200267695574 1.58972136531667 2.34494264674223 1.67542463750618 1.3029242474372 1.31653421054496 1.15735440577394 1.81341439656327 1.00661245327123 1.59289639953706 1.30012505672312 1.57317933400375 0.627592513022248 1.04014027238008 1.30847058953229 0.944612961321471 2.01236133173050 0.213629812315878 0.211173776817797 0.217304195644411 0.218262951590169 0.211585452741596 0.216610426291278 0.211231928528347 0.211821668748945 0.235164664676393 0.212133856187149 0.209110974963716 0.218004300876130 0.222660381779712 0.223796643935056 0.219563612448626 0.220101599044505 0.221346413894288 0.225858843279658 0.224602095076238 3 3 + 19276510 19277535 19277227.909 19276272 19277597 + gene protein_coding_gene FALSE TRUE AT3G51910.1 AT-HSFA7A (Arabidopsis thaliana heat shock transcription factor A7A); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-7a (AtHsfA7a) (HSFA7A) [Arabidopsis Thaliana] (GB:Q9SV12); similar to AT-HSFA7B (Arabidopsis thaliana heat shock transcription factor A7B), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G63350.1); similar to heat stress protein [Oryza sativa (japonica cultivar-group)] (GB:AAP92754.1); similar to Os10g0419300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064617.1); similar to Os07g0178600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059028.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.274486760812406 -2.41090736300592 0.0347833772141317 1 1.70689395094006 3.18171328991652 -0.274486760812406 0.131906992162068
AT3G28007_at 1.73575255121511 2.40814243691775 1.53841063823151 1.53851441920695 1.73739742333922 1.66828943831742 1.68946019638277 2.04918637982053 1.35081626339102 0.949964295645685 2.12709675348310 2.82010775610035 1.93827064836024 2.20116361613039 2.39472200561217 2.29012466134869 1.84719649735790 2.12588679860578 1.65288449846728 0.210585169661443 0.203232820442076 0.195666477677203 0.196888209927555 0.200449938211268 0.203589303109215 0.195363808711010 0.202604826567178 0.203538971919396 0.199825272034349 0.196846099440350 0.195363808711010 0.196830473719896 0.204313150644115 0.201788436314530 0.198325386649499 0.198962975455868 0.198495462788068 0.195363808711010 3 3|0 -|/ 10409785 10410484 10410190.667 10409329 10410956 - gene protein_coding_gene FALSE TRUE AT3G28007.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G10850.1); similar to Os01g0605700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043522.1); similar to senescence-associated protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92465.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.27510016415662 2.41087857217636 0.034785143380434 1 1.70684983444820 3.56362390774198 0.27510016415662 0.132506884774129
AT1G52240_at 1.35607825047355 1.44140033513725 1.41479306133755 1.39602290700904 2.49212617656893 1.41516392577065 4.32177669993343 2.24517839002460 2.42837904975045 2.81996101760146 2.15134051577309 2.5671983452204 1.8987071385856 2.39241552322071 2.09351786767147 1.82914801815875 1.84033575080527 1.86806878450147 2.74768883275427 0.208368933313881 0.204193300765658 0.204422566535491 0.199836754308270 0.199836754308270 0.203850438997335 0.239416928446775 0.208606016306762 0.209909469939679 0.210220525760377 0.200505904016672 0.207089248434312 0.199836754308270 0.203712673333941 0.205792912548507 0.200611388550618 0.199836754308270 0.214741942508992 0.206550129917289 1 1 - 19459446 19460043 19459732.091 19459435 19461535 - gene protein_coding_gene FALSE TRUE AT1G52240.1 ATROPGEF11/ROPGEF11 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily . similar to ATROPGEF12/MEE64/ROPGEF12 (KINASE PARTNER PROTEIN-LIKE, maternal effect embryo arrest 64), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G79860.1); similar to pollen-specific kinase partner protein [Lycopersicon esculentum] (GB:AAW57535.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.623416687465314 -2.41039010814928 0.0348151213861926 1 1.70610137427124 4.38303469812895 -0.623416687465314 0.405100986260661
AT3G29280_at 4.14552817037916 4.35176189434919 4.36725301241954 4.44050787512532 4.85265424311036 4.30506345220255 5.1378486422506 5.47043855559638 4.34389466949832 4.47714014285213 5.26426432298232 5.10686201047061 5.17211156822129 5.896415753945 4.98743520752859 5.01059358206599 4.82068998676073 5.39304853284851 4.38525991887881 0.206747386092600 0.1985617718352 0.198757476588393 0.1985617718352 0.215672825789255 0.208202850896329 0.22177628718132 0.205946859183202 0.1985617718352 0.1985617718352 0.1985617718352 0.202271357802293 0.202689990224851 0.211930286574391 0.203570621390226 0.201648267533019 0.208933616051434 0.200378189267025 0.206440375297572 3 3|0 -|/ 11237963 11239001 11238577.556 11237851 11239232 - gene protein_coding_gene FALSE TRUE AT3G29280.1 similar to Os03g0257000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049601.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95053.1) 0.259652353465203 2.40952920153494 0.0348680181324327 1 1.70478231512930 9.43814491285212 0.259652353465203 0.117163292037717
AT1G64790_at 6.03476626758184 6.79001693882686 5.38880894342983 5.87255807455003 6.06044261076774 5.64403085581508 5.9565683530716 6.65348368944606 6.2410213865511 6.28593308606074 5.84140189847775 6.32958971838212 6.3017645963095 6.00575921073159 6.27272854863755 6.2385391466925 5.80214777384972 5.94823471549042 6.07597707455576 0.210551250650148 0.210941596745767 0.210303481943175 0.214456169675895 0.206680713004842 0.220700161867570 0.211518672226781 0.209872297458356 0.217346505808154 0.203774145455588 0.207313302023427 0.203269299167293 0.207158245998417 0.213377270891361 0.20301504667787 0.20301504667787 0.218196165439474 0.21235422698257 0.208669477968657 1 1 - 24069227 24069998 24069642.455 24068600 24085571 - gene protein_coding_gene FALSE TRUE AT1G64790.1 translational activator family protein similar to putative translational activator [Oryza sativa (japonica cultivar-group)] (GB:AAT77858.1); similar to HEAT repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98589.1); similar to HEAT repeat, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95705.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.362852586204364 -2.40950410587534 0.03486956125907 1 1.70474386582313 12.1968334084164 -0.362852586204364 0.209353700043067
AT4G00390_at 1.48740307159299 1.8095929525878 1.38515119339029 2.06751281863525 1.58838441418876 1.63327156174848 1.73756802713093 1.83861184952538 1.17205491486072 1.2607110080106 1.47525959317155 1.74787837211494 1.63478628631473 1.95747354172236 2.07519170390881 2.0791425778711 2.01549351254589 2.52519661761099 1.58814520656949 0.226024784464458 0.225470873183602 0.225153536534440 0.226284599233965 0.225451803631237 0.232086639598692 0.222157954156602 0.225486129022841 0.233265828319735 0.222157954156602 0.228657006409804 0.222943439132657 0.222660497281384 0.230184883980952 0.227867240126998 0.226165310074936 0.229336812427902 0.229204766192983 0.227379617965558 4 4 - 171669 172174 171924.545 171497 172843 - gene protein_coding_gene FALSE TRUE AT4G00390.1 transcription regulator similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT1G61730.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.274392543812681 2.40940673507323 0.0348755491974701 1 1.70459468393341 3.33299022883556 0.274392543812681 0.131981659044300
AT1G22140_at 9.62708626647907 9.94045635584075 10.3380419779013 10.4542147075898 10.6780593846620 10.2673122862608 10.6082551548047 10.6802846154011 10.7057206174981 10.4755119028968 10.9378576423165 10.5874395290740 10.7882587456283 10.9030840441370 10.5383508989959 10.9191667507605 11.0513730703061 10.6311679399635 10.4393668620311 0.0866694959035691 0.0801934165857264 0.0814030343935982 0.079851324523209 0.0788806596796827 0.0845356888033955 0.0808819433583139 0.0804694795539848 0.0841849422705026 0.0788806596796827 0.0788806596796827 0.0788806596796827 0.0793192124584748 0.0806031274600232 0.086201561818456 0.0788806596796827 0.0788910192079289 0.08272373979329 0.0788806596796827 1 1 - 7815147 7815541 7815305.273 7814754 7815620 - gene protein_coding_gene FALSE TRUE AT1G22140.1|AT1G22140.2 |unknown protein contains domain ZINC FINGER-CONTAINING PROTEIN P48ZNF (PTHR12681)| 0.237387012238909 2.40902344766628 0.0348991296530397 1 1.70400746242945 20.9916074045123 0.237387012238909 0.0924828374814422
AT2G33080_at 2.15352211384578 2.29910528890339 2.63473529350705 2.8277755215966 2.02773346636208 2.14400398844356 2.03461787903048 1.99671677222243 1.46091404702458 1.87515972013075 1.96708402788365 1.79675064936231 2.04936621825691 1.99633165066809 1.84031663121203 1.73505425344850 1.78537086563872 1.85571905791959 1.92029860331490 0.200654904885397 0.189247543325359 0.197962218683636 0.193382844857400 0.195059195695843 0.189247543325359 0.190998310492661 0.195876620454402 0.204420149735735 0.203944165590883 0.189247543325359 0.194036854316251 0.191447703849782 0.194481913419683 0.198777982880435 0.190016033513829 0.197507026444077 0.192130057759141 0.189247543325359 2 2 + 14040747 14041262 14041037.182 14039092 14041314 + gene protein_coding_gene FALSE TRUE AT2G33080.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33020.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33060.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33050.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.206848299892726 2.40874539904977 0.0349162453556396 1 1.70358148711499 4.07996293688332 0.206848299892726 0.046889294079345
AT1G66070_at 6.12521479568241 6.10244625051819 6.33836600875084 6.3612953705306 6.09842640300833 5.95906864504011 6.26608768725662 6.36654185793706 5.8589772771358 5.61840849542117 6.26938257752151 6.1398672439107 6.09111649735542 6.04349253166375 6.45484213713629 6.04138751453782 6.09788569533277 6.0767991027484 5.70037300598099 0.172825229070744 0.168935491542256 0.177833946969217 0.174362626952960 0.172441119569631 0.177535730853037 0.169825005452562 0.184322230744171 0.185595143634330 0.171829467798363 0.175698567454955 0.175725360801871 0.169929662233754 0.176800396002529 0.167286275878959 0.170480962918476 0.173218948063574 0.170708050658571 0.176325240870629 1 0|1 /|- 24599862 24600689 24600348.556 24599549 24602181 - gene protein_coding_gene FALSE TRUE AT1G66070.1 translation initiation factor-related similar to translation initiation factor-related [Arabidopsis thaliana] (TAIR:AT5G37475.1); similar to Os02g0122300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045725.1); similar to BRI1-KD interacting protein 121 [Oryza sativa (japonica cultivar-group)] (GB:BAD11349.1); contains domain SUBFAMILY NOT NAMED (PTHR21681:SF4); contains domain FAMILY NOT NAMED (PTHR21681) 0.200071764331873 2.40814697075985 0.0349531102170586 1 1.70266472295524 12.1410640050264 0.200071764331873 0.030250325197365
AT2G32765_at 1.75841279113325 1.79361888783898 1.4620106513929 1.84956675526751 1.61799759470405 1.75627712938975 1.85782274153667 2.2641955976072 2.12712355039415 2.16657200063942 1.98368302821663 2.16219718990365 1.61993168111502 1.80839833040799 2.06067177371288 1.69564027253987 1.6665862688666 1.74427376551753 1.95678630400888 0.200978261688033 0.207060477106024 0.212868858509781 0.200851602771014 0.202754078484784 0.205466036205799 0.201660276352793 0.227180335806793 0.206203103779562 0.215770931355796 0.200510178393841 0.203341182094634 0.204786794956082 0.202695268764079 0.206778551125908 0.204976887257601 0.207792633604434 0.207373639902919 0.208441542030921 2 2|0 +|/ 13902047 13902441 13902198.2 13901939 13902659 + gene protein_coding_gene FALSE TRUE AT2G32765.1 small ubiquitin-like modifier 5 (SUMO) similar to SUM2 (SMALL UBIQUITIN-LIKE MODIFIER 2) [Arabidopsis thaliana] (TAIR:AT5G55160.1); similar to ubiquitin-like protein SMT3 [Phaseolus vulgaris] (GB:AAM21576.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.243935317368134 -2.40802973940351 0.0349603364312123 1 1.70248513614292 3.75807113884171 -0.243935317368134 0.100267121144682
AT2G30000_at 7.2750632884442 7.38666458360595 6.91056129553177 7.06572811569797 6.92571600576663 7.54238947674381 6.4196027668736 6.26435448544723 5.91095891599838 6.39268260325223 6.11997841017458 6.23893657054733 6.52757905489667 6.20123903205265 6.72981379799438 6.21692715554334 7.03479232694816 6.13939264856295 6.18002331749347 0.192897366425902 0.18765146263922 0.191839431343958 0.188271932593503 0.191021821674024 0.182917534365578 0.194683208933622 0.187241291902614 0.202639249189857 0.189877476000084 0.190061133974209 0.186869033419314 0.185998521025695 0.187310522613552 0.185373205411977 0.187152416556735 0.183991582860815 0.186410059872761 0.187010104429759 2 2 - 12811143 12811377 12811245.909 12810930 12812054 - gene protein_coding_gene FALSE TRUE AT2G30000.1 Identical to Hypothetical protein At1g07170/At2g30000 [Arabidopsis Thaliana] (GB:O80873); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07170.2); similar to Os04g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054163.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_799069.1); contains InterPro domain PHF5-like; (InterPro:IPR005345) 0.257269102342143 2.40741025630607 0.0349985458923747 1 1.70153618292667 13.2549119956829 0.257269102342143 0.114911396838026
AT1G17510_at 5.77531094761399 6.00016952226417 5.60977078585048 5.83774183471775 5.82104876303909 5.96572981000918 4.92409745542767 5.09659963642297 5.17184024410392 4.68695126242771 4.76708910411248 4.96838823194993 5.17125852131203 4.696103316812 4.97495911467096 4.92193830284131 5.40655381479414 4.70208926224313 4.76097848690119 0.175734569339271 0.175153657372262 0.170735255497956 0.180715981864341 0.182705703361443 0.169902755579174 0.175686263665118 0.181401832816598 0.182740685002265 0.180882082539740 0.191649178207323 0.174410900647855 0.174236529728340 0.178412570578696 0.175449185979676 0.175874954165815 0.179526167573790 0.170948093685915 0.182549777785277 1 1|0 -|/ 6023698 6024161 6023977.5 6023497 6024302 - gene protein_coding_gene FALSE TRUE AT1G17510.1 unknown protein 0.218659601043162 2.40693523307760 0.0350278726416116 1 1.70080855824981 10.5409606559530 0.218659601043162 0.0677397465609857
AT2G20260_at 12.4960381869275 12.5129373839039 12.4319758953378 12.3765145912805 12.8808840890074 12.6147290048505 12.7010567559412 12.6570764153101 12.4548145441619 12.7173838995134 13.2065822664198 13.2725312969740 13.0537897458713 13.0258863576093 13.1109001830543 13.0911705145474 12.6285812461986 12.9455905938455 12.6638062293401 0.0844034402079176 0.0839188645168732 0.0845485267051945 0.0866620347982604 0.0845833356453986 0.0909006734792733 0.0853782092813496 0.088084097984721 0.0915185399991329 0.0870481132690254 0.0863398969726362 0.0839188645168732 0.0847808011558415 0.0852174631343332 0.0854635122528467 0.0839188645168732 0.093135048761425 0.0877309504449478 0.0866396686172133 2 2 + 8743865 8744648 8744072.182 8743815 8744848 + gene protein_coding_gene FALSE TRUE AT2G20260.1 PSAE-2 (photosystem I subunit E-2) Encodes subunit E of photosystem I. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSI-E B) (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT) [Arabidopsis thaliana] (TAIR:AT4G28750.1); similar to Photosystem I reaction center subunit IV A, chloroplast precursor (PSI-E A) [Contains: Photosystem I reaction center subunit IV A isoform 2] (GB:Q41228); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375) 0.207063088745802 2.40636577774926 0.0350630608957922 1 1.69993632933861 25.4108418319383 0.207063088745802 0.0477500242785755
AT2G28270_at 2.04986352133947 1.45317167444519 2.28989360678633 2.20992870576114 1.54851070917412 2.02945702430632 1.24517459032096 1.56142994312937 1.88211476813513 1.65004540777482 2.13015481235145 2.07024087090943 1.40115395431609 1.92217782006491 2.20251299776916 1.45126838679418 1.8349875586687 2.11887190816982 1.74756831937862 0.219900916020156 0.215466183034593 0.212000256404926 0.212779082968879 0.212493981075734 0.229529467438635 0.212000256404926 0.218644412605512 0.225752616992601 0.213957288239368 0.218322668656293 0.216177743866700 0.216808651636959 0.217514749901593 0.213808878319251 0.218917643010370 0.223741321259684 0.213945033079839 0.219054449379966 2 2 + 12060914 12061422 12061078.727 12060619 12061475 + gene protein_coding_gene FALSE TRUE AT2G28270.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G44380.1); similar to Zinc finger, ZZ-type; Zinc finger, PHD-type; Protein kinase C, phorbol ester/diacylglycerol binding; C1-like [Medicago truncatula] (GB:ABE79678.1); contains InterPro domain C1-like; (InterPro:IPR011424) 0.286774559699589 2.40623585104011 0.0350710942501862 1 1.69973732860623 3.62409399043786 0.286774559699589 0.144141378851243
AT3G26460_at 2.13653389580367 2.06081247855755 2.6539224499126 2.33436892740568 2.11002143776428 2.43760271033873 2.27648940807486 2.41329407615844 2.20029441205581 2.58471157763569 2.71008056509979 2.61590234609143 2.52141086053227 2.28912756730637 2.73266623504583 2.40135717049219 2.6344378269522 2.89517194792755 2.12137505838485 0.159354034546730 0.152969582361951 0.154594886376178 0.159042942836857 0.151489976212122 0.153744273984816 0.153901801613763 0.159526231818519 0.152077572862565 0.152183740491186 0.150091304193471 0.150060465512266 0.153682831353589 0.154634849534426 0.156883794914703 0.154154226298625 0.156612415259518 0.151928451940424 0.153445187785400 3 3 - 9685404 9685772 9685591.909 9685110 9685894 - gene protein_coding_gene FALSE TRUE AT3G26460.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT3G26450.1); similar to major latex protein homologue [Datisca glomerata] (GB:CAD33533.1); similar to ripening-induced protein [Fragaria vesca] (GB:CAA04770.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.230044357806099 2.40612773806547 0.0350777802282226 1 1.69957174051985 4.75395383848018 0.230044357806099 0.0836899929997085
AT3G51760_at 3.069566654283 3.37130602640306 3.29304780498234 2.92125782833681 3.89539825391371 3.24005606064745 2.67854563958667 2.83545997641153 2.04416618457265 2.65254163022132 2.78803365187251 3.11258643519327 2.7271392962352 2.25779997124024 3.0002263272155 2.72395329129631 2.99467496162656 2.54240870546570 2.94099955271029 0.249571793857668 0.253327161686406 0.251642902834464 0.252911914968201 0.255354694898486 0.252527724408257 0.252711843175007 0.257470370760971 0.265087272235569 0.249098364283247 0.261915244948670 0.246449781329646 0.24736019474087 0.258915187236179 0.252203783027580 0.250230902223197 0.258880430110768 0.256414061081165 0.255577263683251 3 3 - 19209612 19210272 19209958.182 19209125 19210477 - gene protein_coding_gene FALSE TRUE AT3G51760.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91126.1) 0.285585393491212 2.40596752995967 0.0350876901797655 1 1.69932636560776 5.82020742349703 0.285585393491212 0.143057701155259
AT3G10230_at 9.50870880971502 9.90980186320323 9.75691993359526 9.889452272832 10.0978133539239 9.59875960717553 10.6422738246116 10.8080268567262 10.3351013224254 10.4017220912875 10.3018145330138 10.1982933824154 10.4157081933482 10.4449771012925 9.79148742998186 10.7253082627441 9.8369193712208 10.0727714358775 10.3419136146513 0.117708978325774 0.112610118679989 0.120585398682330 0.114761524735724 0.112610118679989 0.131999847643436 0.116266649522156 0.116390667120258 0.128450987726137 0.116416513398393 0.112610118679989 0.112610118679989 0.112747051256839 0.118926959494844 0.118585645535674 0.112610118679989 0.132897771409306 0.113671158942128 0.115545256969495 3 3 - 3164379 3164836 3164623.545 3164080 3166043 - gene protein_coding_gene FALSE TRUE AT3G10230.1|AT3G10230.2 LYC (LYCOPENE CYCLASE); lycopene beta cyclase|LYC (LYCOPENE CYCLASE) Encodes a protein with lycopene β-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the ε-cyclase which adds only one ring, the β-cyclase introduces a ring at both ends of lycopene to form the bicyclic β-carotene. Identical to Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-) (LCY1) [Arabidopsis Thaliana] (GB:Q38933;GB:Q39145); similar to LUT2 (LUTEIN DEFICIENT 2), lycopene epsilon cyclase [Arabidopsis thaliana] (TAIR:AT5G57030.1); similar to lycopene cyclase (GB:AAA81880.1); similar to lycopene beta-cyclase allozyme 2 [Citrus sinensis] (GB:ABF69942.1); similar to lycopene beta-cyclase [Carica papaya] (GB:ABD91578.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Lycopene cyclase, beta and epsilon; (InterPro:IPR010108); contains InterPro domain Lycopene beta and epsilon cyclase; (InterPro:IPR008671)|Identical to Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-) (LCY1) [Arabidopsis Thaliana] (GB:Q38933;GB:Q39145); similar to LUT2 (LUTEIN DEFICIENT 2), lycopene epsilon cyclase [Arabidopsis thaliana] (TAIR:AT5G57030.1); similar to lycopene cyclase (GB:AAA81880.1); similar to lycopene beta-cyclase allozyme 2 [Citrus sinensis] (GB:ABF69942.1); similar to lycopene beta-cyclase [Carica papaya] (GB:ABD91578.1); contains InterPro domain Lycopene cyclase, beta and epsilon; (InterPro:IPR010108); contains InterPro domain Lycopene beta and epsilon cyclase; (InterPro:IPR008671) -0.258817796200151 -2.40566631943095 0.0351063294546507 1 1.69886504146109 20.3179640518186 -0.258817796200151 0.116727797623853
AT1G32000_at 0.554230533364545 0.410502060242566 0.935823040880926 0.536490430783299 0.621617350575974 0.650488377142967 0.472379754998743 0.544661489999312 0.847407805465963 -0.143984919311456 0.459409107670877 0.543643870699189 0.335796964166523 0.128376806177690 0.905384448161248 0.136436136812857 0.916125067290739 0.902767162530708 0.151879263046346 0.196857743364388 0.198741340829973 0.200536910454677 0.198666192311344 0.188121234478637 0.192050287200568 0.189444738648721 0.188121234478637 0.207802826965267 0.203843060979352 0.198573254252250 0.192504592758335 0.188121234478637 0.206853172313169 0.204382523462944 0.191293057819846 0.198524673180333 0.204094639464405 0.192054550144727 1 1 - 11508744 11508753 11508748.5 11508265 11508889 - gene protein_coding_gene FALSE TRUE AT1G32000.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT5G38190.1) 0.223276534616473 2.40544385991542 0.0351201017028324 1 1.69852433835910 1.00382071066805 0.223276534616473 0.0746711508940873
AT1G53600_at 3.12004970869503 3.33358465217121 3.71619655286084 3.51719013601786 3.56717359123477 3.60555072438127 3.38569956416870 3.25332906770187 3.70172946995973 3.7499439600714 3.70615696151772 3.47097752288852 3.76721510824841 3.95633420390736 3.83532692250342 3.71272521317983 3.86259403033544 4.06065253274297 3.65555506726362 0.186591118440322 0.192196700070721 0.181719027922109 0.195905732350357 0.181598032142025 0.194358234618874 0.185188416019497 0.188143785677269 0.190285931703943 0.192662413839513 0.181598032142025 0.191702563398973 0.184353667160894 0.194260359028457 0.183918237736852 0.184095124484084 0.195460361130348 0.190728510710258 0.186213420613476 1 1|0 +|/ 20006855 20008644 20008169.222 20004931 20009463 + gene protein_coding_gene FALSE TRUE AT1G53600.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to hypothetical protein S250_18C08.29 [Sorghum bicolor] (GB:AAL73539.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.211225157878343 2.40507410861089 0.0351430042653051 1 1.69795806981511 7.1868004051608 0.211225157878343 0.0558608764123391
AT1G48110_at 6.54600977596905 6.84519371439632 7.05003251441456 6.96498228414594 7.12182679474356 6.42971016631834 6.98221423364439 7.2307495504847 6.88780392941649 6.52272328731153 7.30278389709965 7.73637390331986 7.1307937571661 7.5183355628419 7.25594748499515 7.48261433176683 7.00579430541402 6.9575519840158 6.77575170622842 0.207998081231227 0.205513100904403 0.212468173901754 0.215797389872828 0.209340040990199 0.208440393190802 0.213252326772682 0.211392816101585 0.219288055710765 0.204902748395520 0.207872395135198 0.205954316329044 0.203286750446814 0.219995579990011 0.212248680558292 0.203286750446814 0.242175946978162 0.207400836415597 0.205114408300909 1 1 - 17774011 17774445 17774159.273 17773607 17777136 - gene protein_coding_gene FALSE TRUE AT1G48110.1 ECT7 (evolutionarily conserved C-terminal region 7) similar to ECT6 (evolutionarily conserved C-terminal region 6) [Arabidopsis thaliana] (TAIR:AT3G17330.1); similar to rubisco subunit binding-protein beta subunit-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73484.1); similar to Os03g0317000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049941.1); similar to Os01g0679900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043869.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.280305441811958 2.40493930067874 0.0351513579420165 1 1.69775161851721 13.9101069014210 0.280305441811958 0.138177381847496
AT3G54970_at 3.50385892078197 3.72343418866352 3.34558519373024 3.53916729388966 2.87231123411275 3.4338581414959 3.61363239391197 3.34998651129774 3.49701433896194 3.50326382017593 3.3080270687047 3.29279667937703 2.89679586864862 3.32522707292464 3.51319079711672 3.14454212823469 3.82975510803226 3.42688786234516 3.83966749517458 0.203160792041032 0.207731545441202 0.20507834263343 0.206916488735534 0.208166276567465 0.206447058748635 0.203022909148351 0.202490731693868 0.205613980926534 0.211259653946753 0.200249630865079 0.206184080424509 0.210940734747319 0.200249630865079 0.205653058739016 0.205415236812447 0.210950477030158 0.202444909198226 0.200407611323982 3 3|0 -|/ 20379768 20380459 20380082.4 20379150 20381075 - gene protein_coding_gene FALSE TRUE AT3G54970.1|AT3G54970.2 catalytic similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19769.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544) -0.260579966393918 -2.40431693103604 0.0351899495205203 1 1.69679852673985 6.90046325537403 -0.260579966393918 0.118707351950777
AT4G36560_at 2.17241934296518 2.03916086064244 2.10243177806165 2.15923755022797 1.70223766661434 2.27848284979854 2.05571900903109 2.20078857930908 2.97921159114207 2.49851946800961 2.23514580457815 2.13938344484605 2.51716952728953 2.02230494151127 2.25790303694326 1.98983650632042 2.07160180988566 2.27663820154935 2.40990442370836 0.166214231202842 0.160886570841997 0.170478765921034 0.162081744089463 0.159243559875636 0.158274445546188 0.165888301160230 0.161526046429446 0.160926110458516 0.175948093840023 0.167234098329518 0.162061047550473 0.160744576585178 0.159557067277724 0.162681232156519 0.161886342171828 0.158786310518582 0.163236566779298 0.164441292168955 4 4 + 17252670 17252967 17252817.364 17252662 17252994 + gene protein_coding_gene FALSE TRUE AT4G36560.1 unknown protein -0.248444202657937 -2.40354448596714 0.0352379042039880 1 1.69561569029460 4.49778957294902 -0.248444202657937 0.105845021306692
AT4G27600_at 9.44843187175221 9.59439434682402 9.27412594117222 9.29160307125632 9.7487977887273 9.50981938550964 9.87830453836244 9.68544291417335 9.82376189779769 9.69818299177598 9.62644831803838 9.74483699769892 9.60405032743856 9.3402361101686 9.7325564412107 9.63203252760971 9.4987708791478 9.48806201263055 9.91858455914355 0.109933510537846 0.108670450044676 0.110564479957227 0.116401872312624 0.110066738566084 0.110215840400132 0.109014423377409 0.109888897613171 0.113731022726424 0.109535991496543 0.110053571264131 0.111399717825387 0.105694810121781 0.124862202811006 0.115987444541485 0.105694810121781 0.116890231621775 0.109091899541180 0.110287206887812 4 4 - 13782781 13783519 13783088.455 13782521 13785118 - gene protein_coding_gene FALSE TRUE AT4G27600.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G19600.1); similar to carbohydrate kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66284.1); similar to Os10g0573000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065468.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.212846242803899 -2.40351039099484 0.0352400223406612 1 1.69556348308108 19.2523069912132 -0.212846242803899 0.0589191479289217
AT1G17930_at 5.49859179223942 5.48087644152785 5.47366067621469 5.30862934695559 5.60647824615363 5.89660821676184 4.61537676684986 4.70985562257804 4.48022914800079 4.81930735703711 4.43349082760452 4.46522353867863 4.564979647604 4.3358537064085 4.71271016474435 4.58169379931535 4.86630068612319 4.4822715927508 4.57134716707389 0.237881360298367 0.233818175249188 0.23032249950041 0.2282858321151 0.232119344120074 0.241951558279176 0.225517639397062 0.237574383121992 0.240551236723908 0.229299146558815 0.229841451542193 0.235632281557793 0.230309895704992 0.225987223829765 0.229092626764187 0.226273445219235 0.229821508818102 0.229086296726053 0.230713207733194 1 1|0 -|/ 6166715 6167267 6167011.1 6166213 6168832 - gene protein_coding_gene FALSE TRUE AT1G17930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25010.1); similar to Os01g0738500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044189.1); similar to Os07g0507600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059740.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABA93972.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) 0.213428285211192 2.40211421567593 0.0353268655942173 1 1.69342576676055 9.91323133171391 0.213428285211192 0.0601102397443635
AT1G79370_at 1.20023163358972 1.10922391836376 1.32025703379022 1.20521811144652 0.580949319281445 0.905431879585418 0.681080265569393 1.01313940174540 1.77320578535837 1.31122841774349 0.902273591358881 1.38026936062816 1.07153604690722 1.10563123146903 0.712483916483914 1.07210576489124 1.17981067117023 1.22184656733003 1.54408210004987 0.22391253558915 0.224624015612887 0.229251683822888 0.223491259949649 0.232033324024561 0.229124048096668 0.227738519755430 0.224104827207878 0.242465251625924 0.229894108014738 0.228543252198674 0.230155619001917 0.235494707755455 0.228462340965202 0.228884759775006 0.227174282496338 0.229845490641744 0.230090124354512 0.229965317784432 1 1|0 +|/ 29863793 29864406 29864149.9 29862827 29865056 + gene protein_coding_gene FALSE TRUE AT1G79370.1 CYP79C1 (cytochrome P450, family 79, subfamily C, polypeptide 1); oxygen binding member of CYP79C similar to CYP79C2 (cytochrome P450, family 79, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G58260.1); similar to Cytochrome P450 79A1 (Tyrosine N-monooxygenase) (Cytochrome P450Tyr) (GB:Q43135); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.230024421364286 -2.40130298730080 0.035377420205456 1 1.69218380912147 2.31373315117003 -0.230024421364286 0.0842597737446579
AT4G29950_at 7.19905515712855 7.53062710275232 8.37983793612187 8.31552701474163 7.88581454181941 7.63030519448041 7.5926606080983 7.69084516141143 7.12423223922671 7.17850579437899 7.52005424226164 7.17033339382113 7.22898740500661 7.43974653002567 7.01592108487556 7.07341837350256 6.71288267396065 6.9033020030052 7.40590369839717 0.164010893434232 0.159130714205994 0.166447100555435 0.169046000885500 0.167713234552839 0.176506341332119 0.167474058776328 0.160134999318868 0.180977927010255 0.15911548011586 0.164729004478673 0.160722593282045 0.157651400705146 0.166614047516696 0.16645547214834 0.166733214004420 0.173134569381874 0.170602931590679 0.157651400705146 4 4 + 14659709 14660314 14660013.455 14657054 14660579 + gene protein_coding_gene FALSE TRUE AT4G29950.1|AT4G29950.2 microtubule-associated protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19240.1); similar to microtubule-associated protein-related [Arabidopsis thaliana] (TAIR:AT5G57210.1); similar to Os08g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062249.1); similar to putative microtubule-associated protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45848.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195)|similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19240.1); similar to Os08g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062249.1); similar to putative microtubule-associated protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45848.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.223220483541468 2.40052124517432 0.0354262038197323 1 1.69098708634404 14.9627314015567 0.223220483541468 0.0752342254443762
AT1G22890_at 9.64232074242573 9.4707770358409 9.06289024755987 9.31578819006875 10.1328039625447 9.4885922297596 7.0834925612191 6.5614040476396 10.4222231007041 9.35191918234306 9.8499601627709 9.82960560197365 8.4202849769333 9.45508663929703 9.25072633806008 8.40179591660135 8.0356131484599 8.74499171551446 9.37969879459133 0.150764717240282 0.147241460104533 0.152584624739824 0.149388445061668 0.156090194269313 0.155474004115171 0.156034804539981 0.176631381749921 0.155858568604178 0.153068704715653 0.151873250208816 0.146541809035432 0.157038293938072 0.148549944206453 0.146041473109067 0.151542843862598 0.157370937372896 0.16269364434085 0.147339363567489 1 1|0 +|/ 8102895 8103193 8103023.111 8102807 8103521 + gene protein_coding_gene FALSE TRUE AT1G22890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44568.1); contains domain FAMILY NOT NAMED (PTHR12953); contains domain SUBFAMILY NOT NAMED (PTHR12953:SF10) 0.295540548636873 2.40000308001630 0.0354585752850258 1 1.69019390812724 18.2029861712977 0.295540548636873 0.152932723928739
AT2G16440_at 2.77528634503392 3.11825906625823 3.15683853481655 2.72854327998689 1.90818872736508 1.97004298985427 3.14277014425063 3.63281153993805 2.88948536741477 3.40076942851544 3.27793777214734 3.80279531555505 2.57289302720426 3.9784594956103 3.90436822938729 2.88427320542793 2.80818677187958 3.66635895771189 3.23043086462197 0.210609099368338 0.210889343832885 0.211476653283499 0.206237906617667 0.212187031836926 0.215511156726129 0.220358871315159 0.211650372333636 0.213418316803126 0.214752640446237 0.209347445332685 0.216214896239705 0.20779654269167 0.207854638550089 0.223175508990774 0.211240628739288 0.212947342088203 0.221976827250073 0.208847760807777 2 2|0 -|/ 7134018 7134853 7134481 7133439 7137767 - gene protein_coding_gene FALSE TRUE AT2G16440.1 DNA replication licensing factor, putative similar to minichromosome maintenance family protein / MCM family protein [Arabidopsis thaliana] (TAIR:AT5G44635.1); similar to MCM; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE88371.1); similar to MCM family protein [Dictyostelium discoideum AX4] (GB:XP_643562.1); similar to putative replication licensing factor MCM4 [Oryza sativa (japonica cultivar-group)] (GB:BAD88098.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain MCM; (InterPro:IPR001208); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain MCM protein 4; (InterPro:IPR008047) -0.269015590424891 -2.39977964274107 0.0354725430110434 1 1.68985189521066 6.07182807029604 -0.269015590424891 0.127760016414883
AT4G00440_at 4.45023652770147 4.55623130282576 4.35808040397932 4.4132195284272 5.05160218728551 4.77247416370845 5.56968283817563 5.44517771899381 4.31093794254997 4.44486623114974 5.54382462393132 5.03692305343254 5.44179446234109 5.5401396010899 5.33726780526414 5.28067822336999 5.50331915216644 5.80795206643824 5.21653370901941 0.222738374178765 0.219035596811807 0.220850916460336 0.217923565999314 0.220995943093608 0.222807609971456 0.212777160710664 0.217849195305869 0.237242882842231 0.215616067028075 0.214914569898843 0.21581967071675 0.220351675998213 0.215505389481112 0.218027925474355 0.212777160710664 0.235737033520059 0.212777160710664 0.212777160710664 4 4 + 197541 198048 197817.545 193879 198579 + gene protein_coding_gene FALSE TRUE AT4G00440.1|AT4G00440.2|AT4G00440.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91371.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) 0.211276693261891 2.39968519365191 0.035478448911606 1 1.68970732529560 9.87405475109243 0.211276693261891 0.0567896733327654
AT2G42200_at 3.15569660352340 3.53998408318455 4.52498693264556 4.38692595370584 4.75275470803417 3.81335560216915 5.47536905769308 4.58177019959351 3.32271922560812 3.29108078950787 3.89132754747597 3.70405779462845 4.12752453013138 4.37196654861096 3.75176523541504 3.98797370424122 4.19822910319555 3.60275537326443 3.43189591112571 0.234518573222614 0.229962705672420 0.224845544378499 0.224651641763014 0.240046731260541 0.233777083413004 0.238544762981333 0.239912192804695 0.232698285867822 0.231988417399139 0.230254067363917 0.224651641763014 0.226583505868388 0.229760421405996 0.231244383855610 0.226566386003171 0.228571846014581 0.237926909209796 0.227961021171510 2 2 + 17595988 17596505 17596235.727 17594485 17596708 + gene protein_coding_gene FALSE TRUE AT2G42200.1 squamosa promoter-binding protein-like 9 (SPL9) Identical to Squamosa promoter-binding-like protein 9 (SPL9) [Arabidopsis Thaliana] (GB:Q700W2;GB:O48527;GB:Q94AJ2;GB:Q9SMX7); similar to squamosa promoter-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G57920.1); similar to squamosa promoter binding protein-homologue 5 [Antirrhinum majus] (GB:CAB56570.1); contains InterPro domain SBP; (InterPro:IPR004333) 0.393592742006596 2.39942267233396 0.0354948693879695 1 1.68930550009772 7.93036303675246 0.393592742006596 0.235235165759548
AT1G36160_at 8.12502756319786 8.23231578087888 8.00223868317993 7.47733452135732 8.86626078793802 8.72816528762408 9.28803612254019 8.88419238907125 8.97410708831824 9.39256924562928 9.67478685165755 9.42827031169614 9.04252095158887 9.03034753331773 9.16200867653397 8.99924868689328 8.42639322954284 9.18288680179704 9.45582313461216 0.166744438090603 0.161319290573657 0.172854178066431 0.181086852297748 0.155604370437069 0.171136171256019 0.155604370437069 0.160096707872141 0.163977854435160 0.162605200531558 0.160262578453790 0.155776404750052 0.160550808958440 0.158369549073347 0.163098291329956 0.155604370437069 0.177068980676901 0.163872542357125 0.159417757391755 1 1 + 13544328 13544735 13544520 13535377 13545220 + gene protein_coding_gene FALSE TRUE AT1G36160.1 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. similar to MCCA (3-methylcrotonyl-CoA carboxylase 1) [Arabidopsis thaliana] (TAIR:AT1G03090.2); similar to acetyl-CoA carboxylase [Brassica napus] (GB:CAC19875.1); similar to acetyl-CoA carboxylase [Brassica napus] (GB:CAA54683.1); similar to acetyl CoA carboxylase (GB:AAA75528.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763); contains InterPro domain Acetyl-CoA carboxylase, central region; (InterPro:IPR013537); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Biotin carboxylase, C-terminal; (InterPro:IPR005482); contains InterPro domain Carboxyl transferase; (InterPro:IPR000022); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, N-terminal; (InterPro:IPR011762); contains InterPro domain Biotin carboxylation region; (InterPro:IPR011764); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) -0.259875876519337 -2.39932323896937 0.0355010907858437 1 1.68915330626369 17.6466835769226 -0.259875876519337 0.118538689114708
AT1G20870_at 1.83119642539722 1.77527123400013 1.66806229230640 1.55906600709756 1.71055935323532 1.71857394471305 1.76867766834060 2.01178396932606 2.54611312586223 2.59783873694557 2.57088072610609 2.58780996230796 2.26042347906433 2.48621094115053 2.71246555054708 2.13860262898147 1.91388368293635 2.78358767357067 2.84014583994884 0.212675639644171 0.21180306105533 0.223031458507074 0.218367962652098 0.222111589356740 0.218265892138567 0.215836842905086 0.224385925541233 0.227188517450819 0.215980622422529 0.218465946152601 0.21339481374846 0.216806797955625 0.214450263944803 0.21180306105533 0.214781766153224 0.221040489893162 0.215647241444974 0.216284870303612 1 1 - 7259286 7259912 7259562.091 7259091 7260764 - gene protein_coding_gene FALSE TRUE AT1G20870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54850.1); similar to HSP20-like chaperone [Medicago truncatula] (GB:ABE82163.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) -0.206149872631874 -2.39925436186747 0.0355054009451921 1 1.68904788305733 4.30194835255301 -0.206149872631874 0.0471308664421962
AT1G10000_at 1.87593477548555 2.04122664512965 1.67434422858865 2.14963182012829 1.61402052225320 1.56781631603705 2.014475978346 2.4643959080301 2.43520786261259 2.2759085750874 2.74810697183436 2.12666621795130 1.92634130891765 2.65238727055938 2.05198508643299 2.29366006086756 2.58713568505100 2.04091861736981 2.70715291131257 0.189574654388911 0.185158878892817 0.192531239123838 0.189657716484913 0.19880830598983 0.190744490243584 0.187405994243151 0.186944422719569 0.193942221729054 0.202444683240717 0.185158878892817 0.185158878892817 0.190970410136452 0.193176741914949 0.186704330629270 0.18779330017942 0.193171341853165 0.196455585989301 0.193661697399812 1 1 - 3263892 3264391 3264123 3263879 3264790 - gene protein_coding_gene FALSE TRUE AT1G10000.1 nucleic acid binding / ribonuclease H similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06845.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.258455701146937 -2.39909312373938 0.0355154928192820 1 1.68880109495141 4.31330907527174 -0.258455701146937 0.117088134421562
AT3G59950_at 6.7076963489605 6.42572279000321 6.6236374422586 6.31143577149376 6.78918427888537 6.90318070862969 7.28110797938642 6.99666839617724 6.35346806280113 6.79070447245271 6.53257567019723 6.2631289693609 6.78533537301167 6.41245799980239 6.31793621301097 6.46873203245245 6.64782505366748 6.4417994958117 7.12573913460548 0.198515271181087 0.186496634806549 0.189990073823812 0.195668173877994 0.185932115853703 0.189325252868515 0.187575554286901 0.187673929402833 0.205158510384775 0.181715729293929 0.183745254286167 0.190683606508205 0.195805628791760 0.198826959489994 0.19197834948164 0.182161897320571 0.198805516209776 0.18582669350678 0.186146741566234 3 3|0 -|/ 22155547 22156656 22156098.778 22155257 22158668 - gene protein_coding_gene FALSE TRUE AT3G59950.1|AT3G59950.2 autophagy 4b (APG4b) similar to autophagy 4a (APG4a) [Arabidopsis thaliana] (TAIR:AT2G44140.1); similar to Os03g0391000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050279.1); similar to Os04g0682000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054293.1); similar to putative autophagy protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAR87271.1); contains InterPro domain Peptidase C54; (InterPro:IPR005078)|similar to autophagy 4a (APG4a) [Arabidopsis thaliana] (TAIR:AT2G44140.1); similar to H0124B04.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86292.1); contains InterPro domain Peptidase C54; (InterPro:IPR005078) -0.234426350343540 -2.3990793458624 0.0355163553041628 1 1.68878000696713 13.3750097515747 -0.234426350343540 0.090068266748143
AT3G22780_at 4.45347010908951 4.52393565148203 3.68251559598441 3.64593227186265 4.69820045018907 4.26873444892634 4.84826082057463 4.60390292719784 4.55563663269702 4.97143083555636 5.03571573972116 5.32217460407871 4.8822080579837 4.66436643825101 5.25565276800938 4.56312244775644 4.03201869825281 4.9653298284714 4.78227085950049 0.246152846712167 0.244365443345065 0.247534102461971 0.255423206062375 0.243736004395039 0.250294742105998 0.262322280481881 0.248718438773999 0.246767807928604 0.246577060709691 0.246588612434283 0.241591547067717 0.239013138698865 0.239013138698865 0.24772257016103 0.242352563362012 0.259795006029349 0.239013138698865 0.239013138698865 3 3|0 +|/ 8051340 8052019 8051765 8048809 8052267 + gene protein_coding_gene FALSE TRUE AT3G22780.1 TSO1 (CHINESE FOR 'UGLY'); transcription factor putative DNA binding protein (tso1) mRNA, tso1-3 allele, similar to tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14770.1); similar to Calcium-binding EF-hand; Tesmin/TSO1-like, CXC [Medicago truncatula] (GB:ABE82953.1); contains InterPro domain Tesmin/TSO1-like, CXC; (InterPro:IPR005172) -0.231626277557216 -2.39883776184954 0.0355314815928862 1 1.68841025070220 9.1455455421134 -0.231626277557216 0.0866061325576682
AT3G45670_at 1.36995173782074 0.867335776358202 1.72931875666711 1.49501248923347 1.29450607578586 1.82918057598054 1.36445397846677 0.896273364637044 1.17485077792456 1.64436533775480 1.44964096392833 1.10487488716226 1.36100012440393 1.09371160401933 1.45428148823489 1.54336097640369 1.91668559521185 1.12439664230708 0.918729563937003 0.207841072550114 0.208417895481223 0.219606058403531 0.2140845552307 0.202805976918951 0.210086430707958 0.205806028599871 0.201580547834853 0.204132546815041 0.215615528875791 0.210221445860742 0.205153989820135 0.207969478089027 0.207063092014261 0.204190673007162 0.203626061459967 0.213575533145776 0.208299010309368 0.207478298920293 3 3 + 16776922 16777386 16777175.455 16776305 16777444 + gene protein_coding_gene FALSE TRUE AT3G45670.1 protein kinase-related similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G46140.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93553.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.298756451049761 2.39873950714939 0.035537635401101 1 1.68825986952678 2.66924205857590 0.298756451049761 0.15599821054329
AT2G34340_at 3.4931224874952 2.99473784668469 3.51142684156702 3.61735073084991 3.2334123724111 3.83355954485776 3.02677719442514 3.30470916141787 2.99908928204554 3.21150151110444 3.19894028321149 3.15037795182118 3.24837923658180 3.18135035265781 3.30809504428502 3.11942540179196 3.33078072691545 3.51790342469627 2.87513631261332 0.165193976754350 0.171815769987961 0.165810788803721 0.166554728150388 0.168142891008442 0.165031777078269 0.164389591382793 0.165053029014041 0.172395487108157 0.165971556318857 0.165990680607426 0.165760471596224 0.169395842367154 0.166854814882309 0.167739938330571 0.163992498034032 0.168225485410843 0.180236924969454 0.166112381411673 2 2 - 14496188 14496479 14496353.545 14495865 14496681 - gene protein_coding_gene FALSE TRUE AT2G34340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29640.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD86925.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.286215775369871 2.39851190278269 0.0355518945118219 1 1.68791152113155 6.5196281497967 0.286215775369871 0.144480428361812
AT1G68160_at 7.02891896440581 7.15473931922835 7.62934249793409 7.2542294969902 7.78872623882696 7.46555516936403 7.12137554340295 6.91849430969031 6.10085751218026 6.63906448713746 6.1334003651336 6.30372996499083 6.56185186461421 6.57460621283432 6.0374929449807 6.61472832744852 6.7878407239524 6.55837962524443 6.60422584421306 0.194552220922665 0.197326446565198 0.201511956531100 0.194098092262133 0.188066271900066 0.195440870273718 0.187580224426251 0.201444999148236 0.205825926914795 0.189200150969645 0.184355645965381 0.186846473273383 0.187706612373352 0.188475822837751 0.189791737161343 0.185028572418482 0.201748113088846 0.191439554027624 0.185126292775440 1 1|0 -|/ 25549837 25551808 25550800.222 25549471 25552557 - gene protein_coding_gene FALSE TRUE AT1G68160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to OSJNBa0067K08.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03109.1); similar to H0322F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67770.1); similar to Os02g0631200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047499.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.238517894534957 2.39811558905217 0.0355767363128824 1 1.68730498162510 13.7424492098937 0.238517894534957 0.09512354758797
AT2G01850_at 10.5333517952437 10.4840701901916 11.0847641189141 11.1769284077548 11.3768131744561 11.3171506851946 11.5847027114414 11.6507713963163 11.8477879053464 11.8806836793060 11.8145931272125 10.9858158327255 11.6523713316905 11.5478078559629 10.5154521996129 11.1768928255003 11.3096542892367 11.2856850173795 11.8409072789176 0.0735743031806801 0.0717305098196667 0.0730068909003732 0.0771277487690512 0.0740410661471966 0.0749211595230927 0.0731184480944013 0.0724714735392331 0.0801268642383222 0.0732771325817738 0.0741586784133152 0.0717305098196667 0.07277537866409 0.077643700125173 0.0756337407442713 0.0717305098196667 0.0782386710124982 0.074182392891473 0.0732554971961332 2 2 + 386032 387074 386813.273 385198 387343 + gene protein_coding_gene FALSE TRUE AT2G01850.1 EXGT-A3 (endo-xyloglucan transferase A3); hydrolase, acting on glycosyl bonds EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 27 precursor (EC 2.4.1.207) (At-XTH27) (XTH-27) (XTH27) [Arabidopsis Thaliana] (GB:Q8LDS2;GB:O04906;GB:Q9SEB1); similar to XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT1G14720.1); similar to ETAG-A3 [Solanum lycopersicum] (GB:BAA88668.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.197367743996619 -2.39809674401441 0.0355779179806872 1 1.68727614076779 22.7223159004917 -0.197367743996619 0.0237580901528101
AT3G28740_at 2.09205378466517 2.0403085458206 1.03988718343919 1.20913547615667 1.67629829551227 1.23767246889672 1.52535448840742 0.840552899451937 1.54812274991659 1.39502459669995 1.59030067181165 0.830447751962662 1.24220007728570 1.12612174742740 1.30933809822144 1.23177027415996 1.67996179000565 1.61069595849992 1.75222996786870 0.196911794357080 0.189255399696285 0.184568595850550 0.202503832907879 0.181238531916545 0.183753556926702 0.180718387968889 0.198002194576998 0.195933306171243 0.195034108269988 0.188282153041615 0.181512865077597 0.191664794562865 0.192363590745007 0.193734332496190 0.181035503232969 0.180830997814748 0.186746869515471 0.198984388893365 3 3 - 10790001 10790494 10790273.909 10789935 10791790 - gene protein_coding_gene FALSE TRUE AT3G28740.1 cytochrome P450 family protein similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D6 (cytochrome P450, family 81, subfamily D, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G23220.1); similar to CYP81D7 (cytochrome P450, family 81, subfamily D, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G23190.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.285670149454176 -2.39798594698903 0.0355848662192026 1 1.68710657565656 2.90402305162718 -0.285670149454176 0.144027688698301
AT4G35450_at 11.3643696682529 11.3611221203122 11.4150807440184 11.1935320094594 11.3741774461305 11.3416443967237 11.9185478680108 12.0078005183677 11.4529450960371 11.7102326986759 11.6708002760418 11.5848960935920 11.5588474404724 11.4718497338752 11.4096557826942 11.5466775411538 11.4853687759484 11.4507866057726 11.6295548822341 0.0790378277652612 0.0793877432897738 0.0785914793931032 0.0862139816937522 0.0793407984088843 0.0831884436481471 0.0789881800633892 0.0838687628747514 0.0919266749881048 0.0794164083823312 0.0794473836675196 0.0790196537290142 0.0790775783018527 0.0804903789617993 0.0809269745927346 0.07856368125461 0.0851240483888003 0.0835489027974723 0.0791518732843707 4 4|0 +|/ 16840573 16841703 16841151.375 16839550 16842082 + gene protein_coding_gene FALSE TRUE AT4G35450.1|AT4G35450.2|AT4G35450.3|AT4G35450.4 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding ankyrin repeat-containing protein 2 (AKR2) mRNA, complete Identical to Ankyrin repeat domain-containing protein 2 (AtAKR2) (AKR2) [Arabidopsis Thaliana] (GB:Q9SAR5;GB:O81128;GB:Q9SVX0); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17390.1); similar to TGB12K interacting protein 2 [Nicotiana tabacum] (GB:AAO91861.1); similar to TGB12K interacting protein 3 [Nicotiana tabacum] (GB:AAO91862.1); contains InterPro domain Ankyrin; (InterPro:IPR002110)|Identical to Ankyrin repeat domain-containing protein 2 (AtAKR2) (AKR2) [Arabidopsis Thaliana] (GB:Q9SAR5;GB:O81128;GB:Q9SVX0); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17390.1); similar to ankyrin-repeat protein HBP1 [Nicotiana tabacum] (GB:AAK18619.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.203534336220720 -2.39768759240621 0.0356035830163124 1 1.68664997933115 23.0570032664976 -0.203534336220720 0.0417197516232764
AT1G10350_at 7.33980028001064 7.66081406956957 7.33693688601643 7.46403004242481 7.66177459450543 7.68456819303568 7.28256828055554 7.35078187813516 7.04910535703988 6.8731680220229 7.26764796137535 7.46032577865326 7.265641479317 7.45881467671392 6.74371501863759 7.00813232182502 7.20461956153545 7.36308886526317 6.84580823455515 0.157235462384845 0.148857098502511 0.149344967038193 0.156055291492035 0.15177400274667 0.154398012080371 0.155845047749320 0.147681996476114 0.155431914274223 0.168555333708197 0.153310415552187 0.155089264629755 0.148082072245660 0.156245281181409 0.155455949480080 0.152663461567215 0.149007704604699 0.155941367352022 0.154247947793310 1 1 - 3393636 3394382 3393970.455 3393409 3395057 - gene protein_coding_gene FALSE TRUE AT1G10350.1 DNAJ heat shock protein, putative similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G59725.1); similar to potyviral capsid protein interacting protein 2a [Nicotiana tabacum] (GB:AAQ82702.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.213570319318491 2.39749480328877 0.0356156824216177 1 1.68635494553546 14.5447553175922 0.213570319318491 0.0610309521668312
AT3G54980_at 5.13395237879513 5.35059825754088 4.92996059335472 5.22371397371615 4.90970651647376 5.21033851127997 4.67419039226638 4.53781244652114 3.6273707325746 3.63126952703155 3.57592701067743 3.65654371649091 4.02449277487494 4.11481155527537 3.84090307079993 4.05778538376764 4.2004263582009 4.46557778856135 3.7683388713517 0.226716132552169 0.232813074024027 0.226348133923373 0.228080066135828 0.223759803777629 0.228102238409028 0.230683651716558 0.226439479476496 0.225422676625016 0.226167789391175 0.224581146779141 0.221751336833274 0.225076835192124 0.223419432083767 0.225857479594854 0.220669543675861 0.23021177598098 0.226567633129823 0.223832915040704 3 3 + 20383226 20383795 20383449.364 20381211 20384046 + gene protein_coding_gene FALSE TRUE AT3G54980.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G39230.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91021.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.230345138468520 2.39727569569929 0.0356294384208148 1 1.68601964217504 8.83014321756869 0.230345138468520 0.0851676929595891
AT2G44430_at 3.53268337490029 3.94619687070525 3.83759224969483 3.70004401514285 4.65513751568649 4.33810648488774 3.79638432181027 3.26826466959959 4.75205322256623 4.09808472176657 4.76013484137962 4.73220556150939 4.27734514833395 4.2807660559482 4.31091088176852 4.09896474690267 4.56824817052897 4.50288124613234 4.3357772805532 0.202854572283185 0.205030428572058 0.205091255247760 0.210615450038981 0.221136310854779 0.212729417568478 0.215519697161203 0.204097421162376 0.207807620160708 0.208672919223569 0.204331259090037 0.204359495368945 0.202609328761268 0.210672932443238 0.210649601647448 0.203000281813123 0.214352612920644 0.206639876587013 0.203942874758559 2 2 + 18342650 18343184 18342912 18340623 18343440 + gene protein_coding_gene FALSE TRUE AT2G44430.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT3G60110.1); similar to Os07g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060010.1); similar to Os08g0510700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062208.1); similar to hypothetical protein DDBDRAFT_0188541 [Dictyostelium discoideum AX4] (GB:XP_636078.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.271482381850043 2.39641283245982 0.035683660873248 1 1.68469926076178 8.30266976606589 0.271482381850043 0.130576821759072
AT1G74530_at 6.55190301658238 6.74937036340143 6.2941912065813 6.48167544368446 7.0365511343734 6.71512679970398 7.47370634125756 7.2468011126711 6.7362562466861 6.86469710882332 6.79506936787026 6.80998749475297 6.45534867503462 6.84936729550103 6.56390256542448 7.08020537334837 6.50771197380998 7.09098768238242 6.95605487287685 0.213937867699078 0.201623141706511 0.208275680270587 0.216842384419932 0.200688557145906 0.213964812574021 0.204728718183059 0.217878878409243 0.213854487564226 0.198675976988214 0.206157362958976 0.201335109363541 0.212161564823398 0.206146256661491 0.206714007320623 0.198675976988214 0.215242272407394 0.208053532965405 0.198675976988214 1 1 - 28013594 28014502 28014064.091 28013184 28015823 - gene protein_coding_gene FALSE TRUE AT1G74530.1|AT1G74530.2|AT1G74530.3 similar to Os08g0171000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061095.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54773.1) -0.228411292502784 -2.39617111238326 0.0356988649724537 1 1.68432939289481 13.6293699921041 -0.228411292502784 0.0828032258304397
AT3G56870_at 1.43149580238556 1.91018629820715 1.8968180313493 1.86238776705250 1.03216285216580 1.44965276210297 1.43845623595095 1.71916297973064 1.21928505478552 1.08621053902669 1.73166170449076 1.9932557854416 1.63038480566801 1.3425222507252 2.28650766555469 1.25132136631227 1.27479257488912 1.68059606040236 0.879892510189945 0.179042999968432 0.179208269769709 0.177343194431401 0.183569409318383 0.176488752015934 0.184460901428759 0.176336471624358 0.174818140993124 0.184094295647425 0.178199198144820 0.176827312708319 0.179786889752233 0.181785525395426 0.177050163187711 0.175700914260680 0.180571507207827 0.178391567551982 0.180334005376590 0.181605308876355 3 3 + 21065732 21066412 21065970.818 21063452 21066569 + gene protein_coding_gene FALSE TRUE AT3G56870.1 similar to Os03g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050593.1) 0.261257133058591 2.39613144674381 0.0357013605270578 1 1.68426869937368 2.94787849679455 0.261257133058591 0.120322673272383
AT1G13980_at 7.66073112115778 8.26422905820883 7.47804392529408 7.35568062872206 7.87755530417737 7.69073903375881 7.31879695791985 7.6305636158204 7.99767681084088 7.95305868553687 7.9633732303165 8.08119374005848 7.40029518793955 7.42692179565843 7.29938923819895 7.8496564764276 7.34354475328039 7.69991449343672 8.18119695638066 0.177691166368973 0.174623456100111 0.190620112601615 0.190655530630873 0.179791737753441 0.19118269743608 0.18522674571321 0.179916336176909 0.185910428950205 0.186145379922792 0.177031711146802 0.174282360073300 0.185049347450574 0.184079498173754 0.175788243827027 0.182787648462311 0.202630064939061 0.187212867772161 0.175602591291103 1 1 + 4793815 4794344 4794085 4788556 4794651 + gene protein_coding_gene FALSE TRUE AT1G13980.1 GN (GNOM) Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. Identical to Pattern formation protein EMB30 (EMB30) [Arabidopsis Thaliana] (GB:Q42510;GB:Q38883); similar to sec7 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19610.1); similar to pattern formation protein, putative [Arabidopsis thaliana] (TAIR:AT5G39500.1); similar to putative pattern formation protein GNOM [Oryza sativa (japonica cultivar-group)] (GB:BAD15695.1); similar to H0207B04.10 [Oryza sativa (indica cultivar-group)] (GB:CAH65909.1); similar to GNOM gene product (GB:AAA91150.1); contains InterPro domain SEC7-like; (InterPro:IPR000904) -0.264508417563431 -2.39525192767886 0.035756738843263 1 1.68292298312623 15.4980492549661 -0.264508417563431 0.123740898221795
AT4G25040_at 1.31197385254661 1.26785661346102 1.28828130049761 1.33936188221308 1.44958308403354 1.14374692490735 1.49790974506514 1.24544328082196 1.77422219464174 1.36903530264753 1.33993038054663 0.995001183227845 1.42140572528658 1.22579886995506 1.01300188768301 1.42625897834329 1.00284460958721 1.76976921150419 1.91578320340747 0.214468397987339 0.206977719153273 0.228174361079713 0.219336384117004 0.209397502174522 0.213055061135176 0.206977719153273 0.212276558537561 0.210838431514220 0.210562602160845 0.215889222804698 0.211362749108513 0.209004362627989 0.206977719153273 0.212870331817619 0.206977719153273 0.217327161983695 0.209083822919785 0.225976550238511 4 4|0 +|/ 12868409 12869279 12868858.556 12868184 12869465 + gene protein_coding_gene FALSE TRUE AT4G25040.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G03540.1); similar to Os05g0245300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055014.1); similar to integral membrane family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37279.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03557.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.218824059763154 -2.39503264759785 0.0357705586586084 1 1.68258748976738 2.79831871344278 -0.218824059763154 0.0696167377411514
AT2G27300_at 0.84954184117484 0.92616941251481 0.751882007274209 0.495353255844133 0.665746903164479 0.691910482418974 0.960142751033434 0.651361028461447 1.34033082418132 1.03286650978764 1.06214494945596 0.792271997055237 1.18040247401071 0.976543377565617 0.621866477038553 0.753476946603317 1.0416238438974 1.03030205229254 1.15500940432781 0.185049561296565 0.189150245800487 0.189603874640044 0.189677303951010 0.188236464443947 0.187955708021210 0.191354776630248 0.184711087536053 0.189083758705966 0.191803207450254 0.192146714049810 0.186185546884889 0.185722138557152 0.188177902670988 0.185296231735903 0.187331102271722 0.203709498948009 0.181980244555575 0.185748876970179 2 0|2 /|- 11687519 11688396 11687815.889 11687495 11689033 - gene protein_coding_gene FALSE TRUE AT2G27300.1 ANAC040 (Arabidopsis NAC domain containing protein 40); transcription factor similar to ANAC060 (Arabidopsis NAC domain containing protein 60), transcription factor [Arabidopsis thaliana] (TAIR:AT3G44290.1); similar to Os08g0562200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062518.1); similar to putative NAC2 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09612.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.219660247073178 -2.39491859519260 0.0357777487010298 1 1.68241299513998 1.80321242398854 -0.219660247073178 0.0708699459148726
AT2G20585_at 3.11663328658122 2.881963478727 2.66830958497111 2.80510427565861 2.11874214718642 2.24259990613396 2.76915950974539 3.10147365861617 2.7238895427717 2.42346293409279 2.32037131836976 2.31458208544719 2.6575433061113 2.01875733131915 2.82822937728947 2.88734219892145 1.90111011248520 2.6231986526924 2.00360514616916 0.188415113441673 0.19239997316004 0.193763880839178 0.193490612836338 0.189784462154215 0.189428349253152 0.189830039079229 0.198557170693769 0.187133403553567 0.187662870864432 0.193063055771649 0.187039724217589 0.190597237176703 0.187398071657104 0.188096272238544 0.191081062527826 0.202010496819108 0.192582163009103 0.193876210003384 2 2|0 +|/ 8872328 8872834 8872606.333 8872179 8873848 + gene protein_coding_gene FALSE TRUE AT2G20585.1|AT2G20585.2 NFD6 (NUCLEAR FUSION DEFECTIVE 6) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28395.3); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89009.1) -0.224189624055823 -2.39490494539158 0.0357786092999742 1 1.68239211174041 5.12677040037284 -0.224189624055823 0.0773064730415428
AT3G16150_at 2.57719061760064 2.48230705162656 2.55194975487265 2.56984078607243 2.40238395220130 2.558355861211 2.87286519378456 2.66310212715681 3.71744447589856 3.33791602112749 3.0036845449555 2.73820366207161 3.02201859572078 2.92299505720244 3.34919073442435 3.21153669733817 3.30182934724441 3.50923231214153 3.19473437518932 0.223131870268884 0.219653357154603 0.218433535406213 0.221806859577484 0.214277055119423 0.217310896570046 0.220635315467058 0.223911598686191 0.220840062797991 0.227824271280239 0.219784477716918 0.217293980825924 0.22318723306976 0.217831097164296 0.221465800110674 0.220292604802747 0.216698853152431 0.221340249921236 0.233287242264081 3 0|3 /|+ 5472559 5472912 5472707.889 5471741 5473282 + gene protein_coding_gene FALSE TRUE AT3G16150.1 L-asparaginase, putative / L-asparagine amidohydrolase, putative Identical to Probable L-asparaginase 2 precursor (EC 3.5.1.1) (L-asparagine amidohydrolase 2) [Contains: L-asparaginase 2 subunit alpha; L- asparaginase 2 subunit beta] [Arabidopsis Thaliana] (GB:Q8GXG1;GB:Q9LW72); similar to L-asparaginase / L-asparagine amidohydrolase [Arabidopsis thaliana] (TAIR:AT5G08100.1); similar to Peptidase T2, aspara (GB:ABD32614.1); contains InterPro domain Peptidase T2, asparaginase 2; (InterPro:IPR000246) -0.206297790401950 -2.39477368854609 0.0357868858688545 1 1.68219129785562 5.85926674787864 -0.206297790401950 0.0482232154451386
AT4G37300_at 10.5112836901289 10.5322048529473 10.0560053385995 10.1043341993805 10.9845106565569 10.6558461900284 10.7466789244305 10.7653167098272 10.9751483922515 11.1831744495084 11.0842018366536 10.9084419769565 10.9526788546753 10.8638674139312 10.8435297238048 10.7803373028158 10.6115885621215 11.0029432344173 11.1865403449133 0.085311219940436 0.0848840083250927 0.0926414371478717 0.0869210197515139 0.08540598266132 0.0931990947045692 0.0846135634635147 0.0838903674136504 0.0917803874566518 0.0836929676356773 0.0842489531355567 0.0836929676356773 0.0836929676356773 0.089364082769072 0.0853122621834182 0.0836929676356773 0.0931749950867852 0.0887670053260135 0.0836929676356773 4 4|0 +|/ 17554804 17555398 17554981.6 17554635 17555855 + gene protein_coding_gene FALSE TRUE AT4G37300.1 MEE59 (maternal effect embryo arrest 59) similar to Os05g0451300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055707.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95142.1); similar to Os03g0265900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049653.1) -0.211351365288918 -2.39467061420576 0.0357933866578089 1 1.68203360307432 21.5424740746023 -0.211351365288918 0.0576926648345235
AT1G78400_at 1.11177217633152 1.13257879314728 1.14218405336723 1.37645828034127 1.14735942172588 1.59861377726379 1.31445356876348 1.08379328487958 0.808285025956187 0.870360156566771 1.16890626269270 0.872979774096274 1.49095644551329 0.709273714650176 1.60927473005295 1.26962783800465 2.23552459831639 1.40259991187548 1.38560119776139 0.230554462143601 0.230554462143601 0.239960436634807 0.231791780058701 0.230554462143601 0.23479485849346 0.230554462143601 0.233763756248454 0.239828330154246 0.230554462143601 0.236120542354157 0.230554462143601 0.230554462143601 0.253718295821972 0.234738021600763 0.230554462143601 0.234246238692864 0.232512195194909 0.236096868283241 1 1 - 29503188 29503795 29503548.333 29503174 29504575 - gene protein_coding_gene FALSE TRUE AT1G78400.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G33160.1); similar to Exopolygalacturonase precursor (Pollen allergen Pla a 2) (GB:Q6H9K0); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.239490938349766 2.39459634953623 0.0357980711626844 1 1.68191998557890 2.42155585422501 0.239490938349766 0.096686616159379
AT2G41600_at 5.92725183126787 5.97411636964633 5.7679173765922 5.76876708152385 6.53665670581696 5.45859959510342 5.9042822258533 5.36754415193184 4.17227139424826 4.73953269078099 4.73451900348138 5.35980925801964 4.96671545038401 4.31134371735296 6.02313871188288 5.5000666158255 5.57989736806652 4.83683312183971 4.6921664343468 0.231586555771483 0.236990264297428 0.239330715720785 0.240180418769188 0.231586555771483 0.235658628720312 0.236024924879167 0.253120183645888 0.247341509104089 0.231586555771483 0.231586555771483 0.235248483607703 0.231586555771483 0.240403537825348 0.237087126406461 0.233633905165536 0.248195054304279 0.238429403373289 0.236085640754167 2 2|0 -|/ 17353118 17353744 17353323.8 17352455 17353815 - gene protein_coding_gene FALSE TRUE AT2G41600.1|AT2G41600.2|AT2G41600.3 similar to Os11g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065708.1); similar to Mitochondrial glycoprotein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22358.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428)|similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT1G80720.1); similar to Os11g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065708.1); similar to Mitochondrial glycoprotein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22358.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) 0.359535055574418 2.39388294745199 0.035843101863802 1 1.68082859437299 10.6874905400413 0.359535055574418 0.208564393911199
AT3G05490_at 4.71108378024791 5.24981308109564 4.5289319980845 5.10413456752449 5.41834933950653 5.41053640410129 5.91670251474012 6.70015823568926 6.84399762191 5.44649461466012 8.93517868310548 7.32084762687075 7.19817176936615 8.2308285313649 7.35359473190415 6.66142258605842 5.83983034629687 6.82724736511471 5.97106351526119 0.203515672114404 0.204347476184093 0.203593347583496 0.202289859132808 0.206073929554816 0.206886965921058 0.207194424621769 0.201697456249730 0.207355586625575 0.204272549728516 0.205538733308980 0.205154700199802 0.201697456249730 0.206508475280992 0.205200534448455 0.206262588010152 0.216776079785498 0.201697456249730 0.202190458060487 3 3 + 1591412 1591701 1591558.727 1591283 1591989 + gene protein_coding_gene FALSE TRUE AT3G05490.1 RALFL22 (RALF-LIKE 22) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to RALF precursor [Nicotiana tabacum] (GB:AAL26478.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.339876814380355 2.39362783418882 0.0358592182416618 1 1.68043833051012 12.0715014679340 0.339876814380355 0.192312803917897
AT4G37510_at 9.84024146710964 9.86606653657488 9.57884764342384 9.4215045683503 9.58916988017108 9.45899574233179 9.72881045367729 9.64994895942569 9.7211645870025 9.54880350419036 9.07127436599551 9.75987298341189 9.43045487076095 9.42904029759005 9.81869580677754 9.6555989336889 9.60795158017138 9.2159036380715 9.65799854157505 0.117496025727983 0.114707498373681 0.117729512552566 0.118911911744551 0.114253382753349 0.112958758761423 0.110932143061212 0.115583818012011 0.111655969064155 0.115683111509917 0.125695361624869 0.114222284433829 0.113956168380563 0.110932143061212 0.116040704308613 0.118096270486078 0.123233943816088 0.128903931509591 0.111390701668991 4 4|0 -|/ 17626344 17626996 17626786 17626098 17628941 - gene protein_coding_gene FALSE TRUE AT4G37510.1 ribonuclease III family protein similar to Ribonuclease III [Medicago truncatula] (GB:ABE82532.1); similar to Os01g0810100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044581.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) -0.201596940162565 -2.39234557102225 0.0359403298833754 1 1.67847691576877 19.2123254582903 -0.201596940162565 0.0381459818503352
AT4G02450_at 9.32134004703317 9.14844076796709 9.3994829541184 9.07631140360144 8.9622838547099 8.68929907314133 9.24193238691129 9.08192928484513 9.57215038175782 9.54928066178018 9.13936451275895 9.1934505431968 9.40299197357786 9.255075444126 9.34644583963508 9.3732651495249 9.14732316738398 9.14719268869867 9.5034742425897 0.118980611069438 0.112923571104805 0.115233374737001 0.116147223838560 0.124544683466289 0.121902000556068 0.121864505124686 0.120344447921277 0.118710941441454 0.113424003010681 0.115800636512886 0.114211377998050 0.115479349155980 0.126679147448071 0.113806244957587 0.112923571104805 0.128508885166396 0.123282659531998 0.115068178899076 4 4|0 -|/ 1074007 1074844 1074391.5 1073753 1075878 - gene protein_coding_gene FALSE TRUE AT4G02450.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03773.1); similar to putative p23 co-chaperone [Cryptomeria japonica] (GB:BAE92292.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052) -0.228781365404757 -2.39207864131491 0.0359572373577081 1 1.67806863789433 18.5112643516603 -0.228781365404757 0.0837941503207863
AT1G42980_at 1.70912684785299 1.68558344622503 2.38473343476228 2.37732727180664 1.65680307002213 1.68542474377278 1.39214920662802 1.80539897751790 1.95142807607741 1.17384685534524 1.81616603377347 1.15419356262201 1.14966733789803 1.3510766326413 2.01912361999952 1.71463133986522 1.33150421244101 1.32343975997126 1.13600343174459 0.252579900826578 0.252176239329291 0.242305030361868 0.259129000813258 0.242305030361868 0.243806036132626 0.248583315503909 0.249325957524516 0.242305030361868 0.25047675769244 0.245830565500535 0.242305030361868 0.242305030361868 0.246330857905316 0.251871072277389 0.249117617422094 0.266577562971041 0.257334760407235 0.243937162750235 1 1|0 +|/ 16137346 16137790 16137589.167 16135726 16138027 + gene protein_coding_gene FALSE TRUE AT1G42980.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to actin binding [Arabidopsis thaliana] (TAIR:AT1G31810.1); similar to forminy 2 domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51898.2); similar to Os10g0119300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064063.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) 0.220028350940351 2.3919082765069 0.0359680323977337 1 1.67780806490105 3.28851909155208 0.220028350940351 0.071813247713795
AT1G02130_at 8.08624938610524 8.11583119915721 8.27772497800979 8.45381893304464 8.62249532523544 8.28525694349838 8.222663670537 8.4231291800438 8.05426163883048 7.94241012605582 8.25520669479141 8.08666628266269 8.45733615457998 8.44352051978272 8.2201038010453 8.27575239244544 8.0833358143464 8.0306696765708 7.96035288346696 0.122133403811318 0.123498714980846 0.124249804896897 0.120331078588868 0.127918326841756 0.136454253295894 0.123360963638416 0.1289399480153 0.135180487827252 0.126441248214889 0.121664951290421 0.123202022407770 0.121517048932868 0.127224965823448 0.126140173309827 0.120942870534082 0.120377013034902 0.12226800066625 0.133461082009224 1 1|0 -|/ 400356 401631 400946.1 400035 401882 - gene protein_coding_gene FALSE TRUE AT1G02130.1 ATRAB1B (Arabidopsis thaliana responsive to abscisic acid 1B); GTP binding Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. Identical to Ras-related protein ARA-5 (ARA-5) [Arabidopsis Thaliana] (GB:P28188); similar to AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b), GTP binding [Arabidopsis thaliana] (TAIR:AT5G47200.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02118.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.221877360114962 2.39095404497054 0.0360285548022192 1 1.67634864916215 16.4195206018602 0.221877360114962 0.0745944517970704
AT2G47220_at 0.81856520490297 1.64713622605711 1.61831145757798 1.05681921773376 2.03876875794451 1.37480368638917 1.34663520936823 1.35393142820451 0.00382306431247855 0.787293451525198 0.792685875366278 1.11035205009986 1.34401085421147 0.567777758938317 1.70412690295750 0.711308907311514 0.987118459802392 1.20430189762529 0.90983385894115 0.254237944717701 0.254237944717701 0.254237944717701 0.257618583433398 0.261313744592281 0.254237944717701 0.263863520387028 0.276461345131295 0.254237944717701 0.279622137512234 0.254237944717701 0.268212473013644 0.254237944717701 0.254237944717701 0.270881530991396 0.254237944717701 0.272315129391697 0.261542506804184 0.264059732217701 2 2|0 +|/ 19391129 19392097 19391596.75 19390813 19394024 + gene protein_coding_gene FALSE TRUE AT2G47220.1 3' exoribonuclease family domain 1 protein-related similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G11420.1); similar to Polyribonucleotide nucleotidyltransferase [Medicago truncatula] (GB:ABE92411.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) 0.358167821403807 2.39049483779867 0.036057715394974 1 1.67564638031608 2.21671829679662 0.358167821403807 0.207860647435591
AT3G47620_at 8.82528471412051 9.21024275366503 8.66095678431961 9.01053567383066 9.65092462548626 9.26787858952479 9.25383509895069 9.00385120861834 8.53170470340057 8.7232172545703 9.42147103232906 9.28331573305587 9.48321006818295 9.26552184577352 8.93837426992278 9.31981963545403 9.31603321146267 8.23622266241563 8.88090696691352 0.111961758520352 0.106089768432775 0.110661888794572 0.107673127923139 0.107156891617440 0.110732663064389 0.109980749460375 0.108364212567091 0.120556762796853 0.109870226658481 0.107926592533088 0.109188926957181 0.107761509736567 0.112151355082380 0.106089768432775 0.107234324383966 0.112220874160506 0.114613276926011 0.108936642337159 3 3 + 17570925 17571367 17571149.091 17569834 17571752 + gene protein_coding_gene FALSE TRUE AT3G47620.1 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G69690.1); similar to TCP-domain protein [Antirrhinum majus subsp. majus] (GB:CAE45599.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.260161778407392 2.39030572224748 0.0360697312825423 1 1.67535717387065 18.0454081972075 0.260161778407392 0.119847608182922
AT4G34120_at 11.7341762408097 11.7024515040044 11.8831599331338 11.8868768256345 12.0375434693691 11.5725045625370 11.5390190177166 11.4979084263414 10.8451478409715 10.7410343726668 10.9359618501869 10.9146400812727 11.1263265170163 11.2062162175197 10.7421297369041 10.8308876315858 10.6921976460867 10.9874434456625 10.5233319774793 0.101000217735573 0.0984320334405362 0.102897799108881 0.102448473476719 0.10075789444318 0.106404688963574 0.0985859784085003 0.096586528254684 0.102657773691509 0.0991531340187934 0.100592719509069 0.098688689829829 0.095051106601721 0.0999294131715491 0.105137049119589 0.0977984421450664 0.109221604757916 0.0972276137051942 0.0992520491888256 4 4|0 +|/ 16341370 16342844 16342048.778 16341013 16343122 + gene protein_coding_gene FALSE TRUE AT4G34120.1 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) similar to LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) [Arabidopsis thaliana] (TAIR:AT4G36910.1); similar to CBS [Medicago truncatula] (GB:ABE82274.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.226468197095353 2.3902698870059 0.0360720085945921 1 1.67530237315932 22.5480283913526 0.226468197095353 0.0809798828505061
AT3G24210_at 2.30387740529496 2.52915350335298 2.30120695594310 2.49387005809242 1.90728789727574 1.77523438701025 1.81109060041211 2.61476242334876 1.986607988652 2.76966270964816 1.63432405094411 2.2089801872994 2.47699227827864 1.848864074723 1.80133553094072 1.94266681675911 1.95041563238232 2.48084214606426 2.53369378845998 0.243273875968506 0.232838472771747 0.256062704661913 0.235240544280526 0.235714023527189 0.233584738047698 0.238725372924774 0.236340442176635 0.236620328043931 0.243325588970218 0.243333979106281 0.239872716986228 0.232838472771747 0.232838472771747 0.238140599316229 0.23317653782122 0.251178560566805 0.235633762590938 0.247985776636879 3 3 - 8753856 8754219 8754009.556 8753481 8756072 - gene protein_coding_gene FALSE TRUE AT3G24210.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G04780.1); similar to Os07g0436100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059505.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80109.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.291128365550629 -2.39014780918386 0.0360797676287467 1 1.67511568824908 4.45358077980495 -0.291128365550629 0.149989075801692
AT3G11290_at 5.96035719730109 5.93231946017292 6.09636348942326 5.96051008335402 6.22827631545566 6.61106970596966 5.94514335228645 5.68816163732228 5.86667494042211 5.61985374813594 5.71000323774195 5.42661311045828 5.65529319537212 5.97485442628352 5.85008185973231 5.71360845207463 5.97852623782161 6.05377918183866 5.55817350668893 0.167444351948012 0.172151017825792 0.173934937105651 0.168192083254502 0.175931737127292 0.171546665740156 0.170490653919187 0.176156946508504 0.178214851843473 0.180556868835400 0.180747440984917 0.167642285160309 0.184223457419588 0.176633944685487 0.180973476837449 0.167444351948012 0.182883159915963 0.169822875411621 0.171003176366061 3 3 - 3535785 3536338 3536127.091 3535616 3537849 - gene protein_coding_gene FALSE TRUE AT3G11290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11310.1); similar to PIF-like orf1 [Daucus carota] (GB:ABB83643.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.228168525514845 2.38947446963992 0.0361225929483491 1 1.67408603891328 11.7912313357012 0.228168525514845 0.0833205001995712
AT2G44760_at 8.13373817723796 8.24747399879634 7.94975519013664 8.1172598164498 7.66742938770479 7.92872904861778 8.14825365780312 7.69970087298973 7.44992114520288 8.1204137258566 7.32475610944443 7.55712876613369 7.21289359089799 7.01909574213157 7.63089692804799 7.45725691338077 7.72102828668462 6.92949759057986 7.50701162001103 0.173097312742615 0.171062645850769 0.170474751692626 0.171560002500940 0.168788964059845 0.175785199559574 0.165444728322599 0.166682218484992 0.185105549757338 0.171312794660159 0.168106772579870 0.165672854575034 0.169737973604947 0.181498084715500 0.164253768413960 0.169223399690581 0.175010284289498 0.180333889337334 0.176554433926629 2 0|2 /|- 18460131 18460617 18460344.2 18459926 18461884 - gene protein_coding_gene FALSE TRUE AT2G44760.1 similar to OSJNBb0038F03.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04351.2); similar to Os04g0545200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053466.1); similar to OSIGBa0101C23.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67252.1) -0.238688952711878 -2.388788686359 0.0361662604560135 1 1.67303743213589 15.5110515543517 -0.238688952711878 0.0964258894871114
AT3G14360_at 2.36783735054549 2.22697242712042 1.80990810994118 2.06961116539872 1.93795186931702 1.66912433147691 1.92007370638483 2.06402981052695 2.14388680538163 2.70849041549280 2.09364736726156 2.15659839872431 2.16554957947889 2.25885588011669 2.41280225445902 2.15704007765608 1.90603597051429 2.37173144203963 2.22454049215576 0.190892227258764 0.189981463138295 0.193158603599766 0.190353065785166 0.198391430268525 0.196886161814627 0.192387891448063 0.189981463138295 0.200000999457748 0.195972242926368 0.189981463138295 0.189981463138295 0.192490699152887 0.191336463803188 0.192998652479061 0.200581615002842 0.199376447804729 0.194786526437118 0.199478487475111 3 3 + 4792879 4793515 4793187.636 4791596 4793691 + gene protein_coding_gene FALSE TRUE AT3G14360.1 lipase class 3 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45201.1); similar to lipase [Ricinus communis] (GB:AAV66577.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.220884702169860 -2.38870052596089 0.0361718778203412 1 1.67290263442465 4.28281619248463 -0.220884702169860 0.0734780012411354
AT1G32050_at 10.4264754625096 10.5785153381007 10.5539247838427 10.5289126148526 10.6701738391777 10.4504313571349 10.5912257834216 10.5977423404698 10.4655991428204 10.3578301230955 10.8635886887437 10.9145784231846 10.7611076374966 10.8431927742960 10.7098577322664 10.6363783441487 10.5552281396010 10.6886102946157 10.1940679194426 0.0939238413447094 0.090879141837102 0.0928869869518891 0.093683232616016 0.0899905430295518 0.097794309231941 0.0899905430295518 0.0944486649293513 0.0989350490848765 0.0927926154626794 0.0928420771120089 0.0916146330457902 0.0899905430295518 0.0929829495825158 0.0963732665159603 0.0899905430295518 0.097690708098431 0.090962871382091 0.0918240634096825 1 1|0 +|/ 11529691 11530794 11530300.25 11528425 11531261 + gene protein_coding_gene FALSE TRUE AT1G32050.1 secretory carrier membrane protein (SCAMP) family protein similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT2G20840.1); similar to similarity to SCAMP37 [Pisum sativum] (GB:AAC82326.1); similar to Os02g0697800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047823.1); similar to Os04g0595800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053734.1); contains InterPro domain SCAMP; (InterPro:IPR007273) 0.204886471733881 2.38829601113541 0.0361976633790936 1 1.67228414437061 21.0925419313122 0.204886471733881 0.0464583145764424
AT3G42790_at 9.67805642902568 9.69345844321771 9.6402533009993 9.6954878968229 9.94459404831349 9.55260695223894 8.9407265109385 9.0693300469394 9.06747683367667 8.15379159262457 8.77658452881258 8.69695977671626 8.76629839977782 8.69958016474347 8.51737708552814 8.63190066736392 8.23215297384951 8.70651599785266 8.43353411955004 0.164005973099638 0.162962590284978 0.168366252038507 0.170051890610981 0.163262588715688 0.163367116497394 0.165462900104884 0.164243946069481 0.174138022043965 0.182817453505782 0.166065329569675 0.161732241216970 0.161732241216970 0.164370495129168 0.170251703344050 0.165994110825655 0.191756529635228 0.174327930885144 0.173812090501577 3 3 - 14889194 14890011 14889752.091 14888946 14890769 - gene protein_coding_gene FALSE TRUE AT3G42790.1 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G20510.1); similar to PHD1 [Glycine max] (GB:ABI97246.1); similar to PHD4 [Glycine max] (GB:ABI97243.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.219831521388394 2.3877856595389 0.036230220911095 1 1.67150386904593 18.1168252275358 0.219831521388394 0.0720790510977321
AT2G30540_at 3.65378129510865 3.90004196480906 2.66093632881745 2.98587166399455 2.52789477847483 2.7320784610475 3.15539663908142 3.58595911675186 3.41772132389544 3.06224866775968 3.21490905821347 3.71017761593848 3.31011158184866 3.34903455860681 3.92212482068523 4.15622367948594 3.10801630999125 3.06608183014899 2.91215018071107 0.247319271653645 0.244127807194266 0.245487974084808 0.248335745505025 0.237362986563623 0.242459518431901 0.237362986563623 0.238042530831666 0.242380635393881 0.238267407878978 0.237362986563623 0.238957567519641 0.239805766275986 0.243492958801811 0.237362986563623 0.238213560053218 0.240209239528133 0.249286198720397 0.238092052914312 2 2 - 13018352 13018587 13018474.273 13018182 13018861 - gene protein_coding_gene FALSE TRUE AT2G30540.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S9 (AtGrxS9) (GRXS9) [Arabidopsis Thaliana] (GB:O04341); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G06830.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.249110619055687 -2.38648397712645 0.0363133896756722 1 1.66951391068722 6.45539085900412 -0.249110619055687 0.108529189121520
AT4G15470_at 10.7106837046156 10.8998195525498 10.8951068566295 11.0293632056271 10.7398287670502 10.7018853040679 10.6070308628969 10.7884247213123 10.2384890485443 10.0580937444018 10.4771191231973 10.4358849360167 10.4822721344847 10.4791808298528 10.3612109781090 10.5052066212979 10.1410217968049 10.4721416275969 9.98870834857956 0.0909595648436134 0.0914171035430717 0.0969977435944286 0.091242891297161 0.092079590083548 0.0986075826946484 0.0930706003135705 0.0921636208005738 0.0958269084466267 0.0986671564400485 0.0977117296530367 0.0909595648436134 0.0935625714082729 0.0935926920139735 0.0926821228929225 0.091818610026487 0.0972776022615902 0.0909595648436134 0.0999398300995725 4 4 + 8843835 8845441 8844935.091 8843565 8845808 + gene protein_coding_gene FALSE TRUE AT4G15470.1 similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT1G03070.1); similar to Os05g0402300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055493.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.207107015872413 2.38567637937739 0.0363650829127806 1 1.66827941934974 21.0536937733913 0.207107015872413 0.0513772963408505
AT1G11090_at 5.43627935886431 5.74255130924883 5.88045969109231 5.82156781696091 6.40956114358085 6.11920290125683 6.40629689671823 6.57808617226839 5.15143549099741 5.10635913729467 5.5774598304896 5.47405514594269 5.37123093635802 5.72418251647114 5.30530053399472 5.59696822686293 5.59471782238435 5.63844204719033 5.04963190812553 0.207050338617578 0.201364113617138 0.196636564144714 0.205142003088309 0.198413841431349 0.204599240285216 0.200209134828273 0.209780303132190 0.215766363467722 0.207558772933735 0.203998003139918 0.199167430322267 0.207791444341665 0.196007143336598 0.204865508567984 0.196399906314454 0.202431957621886 0.210211128115401 0.210932812231663 1 1 + 3703068 3703524 3703243.727 3702608 3703779 + gene protein_coding_gene FALSE TRUE AT1G11090.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G16120.1); similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G39420.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Os07g0565700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060014.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.224856787135154 2.38481555646879 0.0364202616920203 1 1.66696367869746 11.3681357335493 0.224856787135154 0.0795091972842837
AT1G25460_at 1.30458267532795 1.23814985696122 1.58358794557233 1.74382172014713 1.04791992509516 1.14561837385792 0.956995230411579 0.882787724048918 0.89167424559258 1.02753790064275 0.943194807801273 0.966575256590704 0.850767960951747 1.22299934959665 1.37938838098326 0.839345247190788 1.43942970923430 1.21103017091051 1.05185229356879 0.211555267170233 0.212807766239442 0.219235694845807 0.219769757870842 0.216538193242897 0.218195141959181 0.222832618749432 0.214994424993612 0.218869811013357 0.216167100265604 0.217606646473218 0.213447602759311 0.210169109438411 0.214576857623333 0.214322795717031 0.213896107258304 0.211470133767234 0.209984360712408 0.216841861167575 1 1 + 8943361 8944156 8943782.455 8942798 8944231 + gene protein_coding_gene FALSE TRUE AT1G25460.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G68540.1); similar to dihydro-flavanoid reductase-like protein [Zea mays] (GB:AAK52955.1); similar to Os01g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041904.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.200422333310040 2.38478974979439 0.0364219171552454 1 1.66692423577243 2.2864060182655 0.200422333310040 0.0367674672123561
AT4G25820_at 1.77329697632294 1.80278052677024 1.58818979217336 1.96982378331314 1.26015592365791 1.39769874320108 1.54894892431726 1.41303778131483 2.25370437387274 1.75343703778190 1.41966971085473 2.07043388074440 1.97346490482341 1.40385943951255 1.65882052419144 1.57121966732001 1.40157299534098 1.92153876635473 2.11012405018989 0.195471056584511 0.19107861653846 0.200253244232641 0.200716762678367 0.202228297559687 0.191436260407399 0.195318420535412 0.191762815866173 0.195077007190596 0.195053724718581 0.203628098705655 0.190447664663735 0.195090590220528 0.197178382093365 0.192595512690504 0.190795007344011 0.195708734133573 0.194515974140032 0.193916212505103 4 0|4 /|+ 13130821 13131537 13131202.778 13130306 13131797 + gene protein_coding_gene FALSE TRUE AT4G25820.1 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9); hydrolase, acting on glycosyl bonds Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer. Identical to Xyloglucan endotransglucosylase/hydrolase protein 14 precursor (EC 2.4.1.207) (At-XTH14) (XTH-14) (XTH14) [Arabidopsis Thaliana] (GB:Q9ZSU4); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT5G57540.1); similar to syringolide-induced protein 19-1-5 [Glycine max] (GB:BAB86890.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.221032496366836 -2.38474268498723 0.0364249364870366 1 1.66685230217844 3.45257204309599 -0.221032496366836 0.0742127425255401
AT2G34770_at 7.446409286379 7.9128457413856 6.65209351815924 6.98704992544138 8.15669684816413 7.53133093130227 8.0969517997315 8.28377210681524 8.9606576433211 7.7481084292926 9.48997791334627 8.42721247194937 8.3907156585671 8.85865671192247 8.12230021118208 7.73676047002228 6.54876605849844 8.38097355441171 7.96064188652532 0.192384631604635 0.188510566785467 0.232840702198052 0.199779637568983 0.188605453059250 0.206985571304934 0.187437753510218 0.190904879225783 0.200113137112465 0.195518410474384 0.192432757255229 0.189770642649101 0.189644657742328 0.190807937619605 0.193775215375045 0.188580773247470 0.224585579231400 0.191468641783068 0.194662602384766 2 2|0 +|/ 14674283 14675094 14674644.2 14672746 14675329 + gene protein_coding_gene FALSE TRUE AT2G34770.1 FAH1 (FATTY ACID HYDROXYLASE 1); catalytic fatty acid hydroxylase Fah1p (FAH1) homologous to S. cerevisiae FAH1, involved in the hydroxylation of fatty acids. similar to fatty acid hydroxylase, putative [Arabidopsis thaliana] (TAIR:AT4G20870.1); similar to Fatty acid hydroxylase, putative [Medicago truncatula] (GB:ABE90051.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Fatty acid hydroxylase; (InterPro:IPR006694) -0.290958766476643 -2.38473457102293 0.0364254570438546 1 1.66683990087427 15.8671719534809 -0.290958766476643 0.150442453890989
AT2G38280_at 7.3122509916298 7.49797056964384 7.15659217283125 7.13452630129863 7.62534251892994 7.30818099057361 7.59607589942562 7.65966632740153 6.59362620516675 6.86329522026155 6.15130154850419 6.90719011620498 6.51452862960262 6.38869960263215 6.34180001914302 6.93644124003935 6.68597836895868 6.46431704675931 6.84637405888236 0.205677165884025 0.202464913151211 0.215022231003972 0.207157440174718 0.209865999640708 0.207401247832504 0.206517356478358 0.207849914707326 0.224659561343726 0.202804712416832 0.22709835700155 0.204949457503582 0.202555425806966 0.205590356851005 0.229219691616113 0.203313724774293 0.218395818522986 0.207725838869504 0.204793816755303 2 2|0 -|/ 16040861 16041948 16041515.6 16040526 16045954 - gene protein_coding_gene FALSE TRUE AT2G38280.1|AT2G38280.2 FAC1 (EMBRYONIC FACTOR1); AMP deaminase Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage. Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EMBRYONIC FACTOR 1) (AMPD) [Arabidopsis Thaliana] (GB:O80452;GB:Q56XX1;GB:Q93ZR9); similar to Adenosine monophosphate deaminase (ISS) [Ostreococcus tauri] (GB:CAL52566.1); similar to Adenosine/AMP deaminase active site [Medicago truncatula] (GB:ABE79614.1); similar to AMP deaminase [Dictyostelium discoideum] (GB:AAF65407.1); contains InterPro domain Adenosine/AMP deaminase; (InterPro:IPR001365); contains InterPro domain AMP deaminase; (InterPro:IPR006329)|Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EMBRYONIC FACTOR 1) (AMPD) [Arabidopsis Thaliana] (GB:O80452;GB:Q56XX1;GB:Q93ZR9); similar to Adenosine monophosphate deaminase (ISS) [Ostreococcus tauri] (GB:CAL52566.1); similar to Adenosine/AMP deaminase active site [Medicago truncatula] (GB:ABE79614.1); similar to AMP deaminase [Dictyostelium discoideum] (GB:AAF65407.1) -0.214656770536595 -2.38461586606053 0.03643307346615 1 1.66665847452409 14.0695993379255 -0.214656770536595 0.0646617638488377
AT2G28355_at 2.34086950618176 2.08739071831620 2.32668563336671 2.95940087163527 2.06311284836918 2.00382939005575 2.37843939168577 3.08344776696564 3.06675124109155 3.00479116810518 2.42984303683147 2.38396426171762 2.36186752763487 2.60732398835353 2.21892404446183 2.28247089419575 2.84167588986734 2.56151251536187 2.78437668805753 0.220467454806909 0.214787847378602 0.220894495894864 0.216499613923811 0.206393492142666 0.212547919162793 0.207010507834659 0.211513636693074 0.210168008440645 0.214197585216129 0.207738989101132 0.212950980419129 0.216512601763797 0.215684043673954 0.217618035306048 0.211975255203711 0.212419116486824 0.215744936834105 0.211663321982368 2 2|0 +|/ 12126479 12127141 12126899.8 12126397 12127356 + gene protein_coding_gene FALSE TRUE AT2G28355.1 LCR5 (Low-molecular-weight cysteine-rich 5) Identical to Low-molecular-weight cysteine-rich protein LCR5 precursor (LCR5) [Arabidopsis Thaliana] (GB:Q8S8H3;GB:P82720;GB:Q8LGD4); similar to LCR14 (Low-molecular-weight cysteine-rich 14) [Arabidopsis thaliana] (TAIR:AT2G25344.1); similar to Putative low-molecular-weight cysteine-rich protein LCR32 precursor (GB:P82747); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat; (InterPro:IPR010851) -0.312652461272833 -2.38455266747569 0.0364371290841538 1 1.66656188392556 5.1118574169326 -0.312652461272833 0.170010808267116
AT2G28350_at 5.77721017524105 5.63686842738867 7.19920013243352 7.21911452602854 7.0970533526599 6.2426144714889 7.2214129236324 6.76760151018961 5.52472248139525 6.00062616815677 5.60216327803655 6.09007816562746 6.12017265435774 6.35238605459036 4.95740304623416 6.31784613956802 6.67616849241326 5.48327081570396 6.22031950459952 0.192479433345224 0.185516181983679 0.191978012825777 0.186066668311668 0.195757823795981 0.188050515103405 0.195344987811879 0.184882974616548 0.197225801056977 0.193907812010970 0.188553479871723 0.184644739552172 0.186712362097147 0.184644739552172 0.201112265722578 0.184644739552172 0.195938535925918 0.197058699666471 0.186720174311435 2 2 + 12122999 12123358 12123171 12121408 12123925 + gene protein_coding_gene FALSE TRUE AT2G28350.1 ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor Involved in root cap cell differentiation. Identical to Auxin response factor 10 (ARF10) [Arabidopsis Thaliana] (GB:Q9SKN5;GB:Q9SQ86); similar to ARF16 (AUXIN RESPONSE FACTOR 16), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G30080.1); similar to Auxin response factor 16, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54297.2); similar to Os06g0685700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058399.1); similar to auxin response factor 10 [Oryza sativa] (GB:BAB85919.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.311717862152854 2.38432732917716 0.0364515931984817 1 1.66621748943838 12.5777138393163 0.311717862152854 0.169213748454380
AT2G34580_at 1.54710165169826 1.89842200155463 1.94251809564842 1.96824781367462 0.999794977616427 1.58535650837640 1.56300353056337 1.79945050779171 2.08404285588188 1.95320582535979 1.52559088564257 1.73175339274432 1.54478479217985 1.26096651291235 0.91955543172982 1.32572905707207 1.55555981195734 1.8189750574874 1.69770775388863 0.194908415262818 0.177192021270161 0.187406634571229 0.185127733614844 0.180409137361874 0.178923745652167 0.185026785554246 0.190371323085032 0.178146688588291 0.187452339828826 0.190294762985889 0.176797370666053 0.180959506248015 0.199050443073114 0.202137891910035 0.181834875460804 0.192525154554154 0.182284387956951 0.181195139731722 2 2 - 14572975 14574669 14573882.182 14572932 14574719 - gene protein_coding_gene FALSE TRUE AT2G34580.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28267.1) -0.264651425700372 -2.38410025716918 0.0364661742360085 1 1.66587045317234 3.34899514224505 -0.264651425700372 0.12513629120437
AT4G15110_at 9.19746937227467 9.26335671127227 8.78091038332043 8.75327750474015 9.26813174533992 8.61403825289377 9.73301003471938 9.32911274413865 9.3131619472013 9.61645396028878 9.64301026798032 9.87842440292 9.25394956614681 9.42897319297873 9.58843746928487 9.12472104410188 9.05182997911391 9.46819489960007 9.41832957635889 0.138561225308465 0.12759734759846 0.142599919179118 0.134781637667014 0.130166074171043 0.140432810363360 0.129397871132694 0.129723115034136 0.146640802638033 0.132094102223570 0.131970679105825 0.128139830839244 0.126620481121042 0.140863423720758 0.139734004045852 0.129350854112595 0.135937442770865 0.136929354275139 0.126620481121042 4 4 - 8629960 8630900 8630321 8629770 8633047 - gene protein_coding_gene FALSE TRUE AT4G15110.1 CYP97B3 (cytochrome P450, family 97, subfamily B, polypeptide 3); oxygen binding member of CYP97B Identical to Cytochrome P450 97B3 (EC 1.14.-.-) (CYP97B3) [Arabidopsis Thaliana] (GB:O23365;GB:Q8W4B8); similar to CYP97A3/LUT5 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3), carotene beta-ring hydroxylase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT1G31800.1); similar to Cytochrome P450 97B2 (GB:O48921); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94036.1); similar to putative cytochrome P450 [Oryza sativa (japonica cultivar-group)] (GB:BAD26183.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.273135151272419 -2.38381309434992 0.0364846220104689 1 1.66543159095853 18.5569172256118 -0.273135151272419 0.133608515603143
AT2G23430_at 6.19168436603698 5.91109694432765 6.05041530882253 5.81286164295262 6.64995357020902 6.25701016337042 6.43843162416721 6.61671037111138 6.85993147742779 6.91203075912849 6.22763771367667 6.36503284849853 6.38074962165503 6.52963957919437 6.39661603123695 7.00743854714527 6.41237349248108 6.42851794422643 6.78030260046729 0.20694626532839 0.196343151070825 0.199689359825044 0.204138629081217 0.202992161197455 0.207463829203421 0.209666994498311 0.201550028725557 0.204824057919942 0.211435553579693 0.199833032231025 0.200721050929938 0.198665960787772 0.200388590686912 0.203611639139531 0.19470840995021 0.200375507834324 0.198389445208863 0.205376384904717 2 2|0 -|/ 9984118 9984941 9984690 9983826 9985101 - gene protein_coding_gene FALSE TRUE AT2G23430.1 ICK1 (KIP-RELATED PROTEIN 1) Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. similar to ICK2 (KIP-RELATED PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT3G50630.1); similar to CDK/cyclin inhibitor [Nicotiana sylvestris] (GB:CAC82732.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) -0.239587439241195 -2.38352818649241 0.0365029338768044 1 1.66499618752306 12.9006483328441 -0.239587439241195 0.0981006086559138
AT1G56260_at 3.13417891354774 2.81330590768277 3.44885385463833 3.28950667090956 3.71571750337417 3.47732243946252 3.53346402985169 3.3101297585257 2.86306611494556 3.4787848334723 3.17561355924808 3.2402467375997 3.63481588332703 3.70220373994133 2.82706739125363 3.51050490675977 3.24102249270454 2.67758065597706 2.89859853506375 0.214568726882252 0.208295488727887 0.212433475786558 0.217141442645720 0.209553395437726 0.214184907884127 0.222492445403837 0.213909922364229 0.221459900850486 0.209115206068236 0.208491515086745 0.211239268890681 0.211920046473123 0.208295488727887 0.227120887175439 0.208295488727887 0.214121358444014 0.210817562954713 0.211197425603269 1 1 - 21068345 21069207 21068939.2 21067944 21069518 - gene protein_coding_gene FALSE TRUE AT1G56260.1 similar to hypothetical protein MtrDRAFT_AC144513g16v1 [Medicago truncatula] (GB:ABE85681.1) 0.228031278859179 2.38336734017184 0.0365132758834978 1 1.66475038362494 6.50595075908836 0.228031278859179 0.0839023220242055
AT3G47000_at 9.44458920344105 9.25714031794419 9.18478024041372 8.92322243281621 9.49829957162902 9.26073202545988 9.34546704838115 9.3774408242006 9.95079256589398 9.75825417667831 9.619027878052 9.53520210832725 9.37834403695316 9.59644266945696 9.50368064917496 9.59109285349767 9.25249126006604 9.5832133438252 9.70072312072567 0.0751298869717264 0.0754067287655832 0.083320186210146 0.0858902203970939 0.0778954061583254 0.084623130691244 0.0809739161941945 0.0825209749946742 0.0768219157877208 0.0751298869717264 0.0783466376370822 0.0753832638888113 0.0790355236180363 0.0789024217467291 0.0774647426299718 0.0751298869717264 0.0863780515091676 0.0768195618951605 0.0753471811736258 3 3|0 -|/ 17324851 17325435 17325109.7 17324631 17327548 - gene protein_coding_gene FALSE TRUE AT3G47000.1 glycosyl hydrolase family 3 protein similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47050.1); similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G47010.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47040.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to exo-beta-glucanase [Lilium lon (GB:AAR14129.1); similar to beta-D-glucosidase [Gossypium hirsutum] (GB:AAQ17461.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.217610276046108 -2.3830372837737 0.0365345065733097 1 1.66424600693854 18.9418056935450 -0.217610276046108 0.0694400535141312
AT3G02900_at 6.5614351206884 6.48196209480709 6.043465749891 5.97138546758078 6.28682862493003 6.0259000908795 7.24883428570317 6.65717439613741 6.88031116794731 6.62943917236445 7.08752179773638 7.19407394772823 6.36895248965564 6.69825532712122 7.5618838187389 6.31811095326352 6.26427319647753 6.8219206585928 6.41165187393398 0.186196400177331 0.186599645615893 0.188711910269271 0.188809225933168 0.185907859658930 0.201841675627628 0.182618221861442 0.184356058637285 0.196048530277379 0.193669968128563 0.187783890309821 0.184428377892936 0.193060849919418 0.195563912674848 0.195449178714815 0.182770364170520 0.200405149138575 0.18759939592362 0.201786327025461 3 0|3 /|+ 646317 647407 646885.1 645817 647655 + gene protein_coding_gene FALSE TRUE AT3G02900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16660.1); similar to hypothetical protein [Plantago major] (GB:CAH59416.1) -0.253274936048995 -2.38300688851877 0.0365364623333037 1 1.66419955918492 13.1245439430336 -0.253274936048995 0.113434217331391
AT4G21390_at 1.24751793183795 1.40088924688723 2.06423500512203 2.05431560811228 1.46611814806246 1.98052821574502 1.02386620673652 1.01327196073623 1.81365580495080 1.80313413759750 1.76158234309408 1.45981377841507 1.67271826186795 1.77619802340179 1.3821235580397 1.32291062456795 1.84873916699875 1.54405227085538 1.91987408981636 0.189276459272353 0.190969937376378 0.198924225781790 0.196148366568112 0.191789998981539 0.199766617420968 0.193066835033460 0.196711017704916 0.195934643888996 0.190926276303525 0.198990120437144 0.190882521458708 0.193485567140996 0.198473169496781 0.191102690111234 0.198959452052491 0.200463743008610 0.195509611634580 0.191647438327183 4 4 - 11394479 11395159 11394705.545 11394366 11397594 - gene protein_coding_gene FALSE TRUE AT4G21390.1 B120; protein kinase/ sugar binding similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11330.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11350.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G61610.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to KI domain interacting kinase 1 [Zea mays] (GB:AAB93834.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.235187741830584 2.38298933009073 0.0365375921635666 1 1.66417272777452 3.25212875583495 0.235187741830584 0.0929274718689207
AT2G39510_at 0.858693468769552 0.79226319999297 0.928139723760964 0.96087756403154 0.388790569349572 1.02327566415068 0.821401566842037 0.969552002040727 1.49702854738687 1.44093276639418 0.66911037267668 1.09558232095658 0.802558497263816 0.735914826993187 0.760625029228786 0.652358391156448 1.07489291560256 1.51254052760387 1.21496979879575 0.181160851085731 0.194082116904699 0.185630394042538 0.188705717756011 0.181160851085731 0.196376769930933 0.195662963430781 0.181160851085731 0.183826745890368 0.185318060429813 0.192807518598346 0.191397853328785 0.188868753797644 0.190042452221832 0.181160851085731 0.188486482748046 0.199306734355521 0.188493529124099 0.189291589700628 2 2|0 -|/ 16498450 16499254 16498851.2 16498221 16500229 - gene protein_coding_gene FALSE TRUE AT2G39510.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G37460.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE82104.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.253284594880910 -2.38269377256608 0.0365566154629588 1 1.66372108714510 1.99150333538934 -0.253284594880910 0.113480143366203
AT3G13740_at 7.40200092505578 7.62015349666688 7.27837480263781 7.0886010510566 7.80768253609072 7.71690864090446 8.01530442747752 7.67937072838666 6.57244706960154 7.21962207960593 7.16863033263719 6.92928459094864 6.70572580564739 6.88113374424772 6.58769357723062 7.24014827071664 7.15922585837003 6.42074047347246 7.59128857685204 0.238731070996767 0.229278040663858 0.233738484723883 0.228274504435155 0.230084391421188 0.231894788137014 0.228274504435155 0.233077222185680 0.246361738656598 0.236670443209581 0.232529160407033 0.233645855838305 0.240904820497145 0.230681102376619 0.247743063581802 0.231577510849830 0.248902638401076 0.262645489294574 0.242954444500904 3 3|0 +|/ 4504484 4505766 4505089.889 4504278 4506243 + gene protein_coding_gene FALSE TRUE AT3G13740.1 URF 4-related similar to RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT1G55140.1); similar to Similar to At1g55140 [Oryza sativa (japonica cultivar-group)] (GB:AAX92894.1); similar to Os05g0318300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055182.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) -0.223764356875988 -2.38268163730452 0.0365573967438287 1 1.66370254357478 14.5832289462072 -0.223764356875988 0.0782957080377979
AT3G02870_at 9.67486002081178 9.9625528515557 9.83521009831035 9.63577341719112 10.5390058206788 10.0660551903298 10.7906197691914 10.7331775051943 10.4566311282382 10.4258725213136 11.4120891149083 11.4901366724052 11.0733276784049 11.3446427239768 11.3141980155535 10.9855432539537 10.3114072277163 10.8348189101653 10.1321885200075 0.0769910916409391 0.0752888673440606 0.084463370928523 0.0810023563754894 0.076945670400099 0.0826813709498316 0.081239174149625 0.0769260055352537 0.083304650710455 0.0752888673440606 0.0760073090214199 0.0758429271795454 0.0754740848160541 0.0785103016805486 0.0767303806086242 0.0752888673440606 0.085225754717197 0.0778833942689188 0.0752888673440606 3 3|0 -|/ 627759 628883 628188.143 627519 629852 - gene protein_coding_gene FALSE TRUE AT3G02870.1|AT3G02870.2 VTC4; 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis| similar to inositol monophosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G31190.1); similar to L-galactose-1-phosphate phosphatase [Actinidia deliciosa] (GB:AAV49506.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) 0.243124160694157 2.38241997587889 0.0365742467242658 1 1.66330271125972 20.8716574205689 0.243124160694157 0.102310887171615
AT3G20830_at 2.46940971539314 2.77086885514549 3.20323200898908 2.86325844401539 3.03179424836438 3.09194701590743 2.58796999512485 3.1124609041299 3.56024985887119 3.57828292986759 3.63800994463739 3.65201550991017 4.06306570664700 3.78127498769674 3.42111243487035 4.19052858398732 3.69345262912190 3.49321022183569 3.46374027864266 0.207764213558741 0.205543918077811 0.204496414947639 0.205908305343170 0.209172538430659 0.208095847793364 0.2041227448581 0.209276247049951 0.217979349588432 0.220972689769936 0.207563656913111 0.203863803199681 0.204152759532199 0.208105578751589 0.216209536293352 0.205625317035148 0.210300985489583 0.211149173813964 0.206519492615869 3 3 - 7285051 7285527 7285307.364 7284969 7286266 - gene protein_coding_gene FALSE TRUE AT3G20830.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G51170.1); similar to Os06g0291600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057421.1); similar to Os02g0603000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047362.1); similar to G11A protein (GB:AAA33905.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.259936645874283 2.38209709022405 0.0365950496995536 1 1.66280933974897 6.52920503578311 0.259936645874283 0.120539586872163
AT1G01740_at 3.85712129110341 3.53134610210095 4.20839087885283 4.18343795866321 4.46351461107198 4.35525759200647 4.36635121692323 4.01331363213027 3.19416029264241 3.87834867627661 3.77678041261412 3.68842945951246 4.0918241445597 3.64117091111060 3.20521616957405 4.18489602841782 4.51732035542702 3.86121630657962 4.24849266892976 0.203704581139683 0.202574115294322 0.208123038073617 0.223457417203766 0.216178313342802 0.205380956861033 0.215137098280149 0.200547623929383 0.202780978099324 0.20658720511358 0.199806773087033 0.195904223838965 0.205469025434955 0.204732351249216 0.212096231819497 0.199937130547997 0.20934020116616 0.208425088169064 0.202777855145559 1 1|0 -|/ 272112 272808 272421.3 272111 274239 - gene protein_coding_gene FALSE TRUE AT1G01740.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00710.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82930.1); similar to Protein kinase [Medicago truncatula] (GB:ABE92129.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.22890335522116 2.38099017839334 0.036666453370339 1 1.66111809358339 7.94460362840189 0.22890335522116 0.0853261705341869
AT2G38540_at 12.2706840347226 12.4329689473790 12.4601931379406 12.5793185263273 13.0824089442164 13.0829360127046 13.4669958652667 13.7643651158078 13.7304950419681 13.5389847837672 14.3930386365972 14.3522987983300 14.0506330682431 14.1508025018022 14.3860435695195 13.5315697727793 13.5509090694361 14.3569045000089 13.1960652099822 0.069104689103599 0.0682539956553556 0.0687391645075705 0.0687252191664128 0.0660416834032542 0.0684019621053284 0.0672425957250635 0.0660416834032542 0.0667137383163258 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0725302106723219 0.0660416834032542 0.0663679563246495 2 2 + 16137510 16137760 16137628.273 16137428 16138252 + gene protein_coding_gene FALSE TRUE AT2G38540.1 LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 precursor (LTP 1) (LTP1) [Arabidopsis Thaliana] (GB:Q42589); similar to LTP2 (LIPID TRANSFER PROTEIN 2), lipid binding [Arabidopsis thaliana] (TAIR:AT2G38530.1); similar to Nonspecific lipid-transfer protein A precursor (LTP A) (Wax-associated protein 9A) (GB:Q42641); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.212735321093467 2.38056874958346 0.036693674049541 1 1.66047424421117 26.6850038237933 0.212735321093467 0.0621446984202994
AT1G05540_at 2.27556720850708 3.05505475569542 2.72416789610212 2.53247796674664 2.68730180863606 2.90104563245429 4.43008166086109 3.88752117689566 3.40230864430245 3.70825618833570 3.78092266227922 4.04080241198988 4.01078395429763 3.94429767287582 3.71982040942835 4.2159106813513 3.73207752360438 3.74890709359635 4.36861101373938 0.215699146953112 0.213545852668176 0.215177470409686 0.217620453870836 0.213625331413056 0.215535774156218 0.211034438735587 0.219440133958584 0.220037719589592 0.232855375699353 0.213234489603998 0.210894140788828 0.219102137600990 0.222777037548271 0.215735394805313 0.211239345474285 0.224694331949468 0.221067360412492 0.218102671717106 1 1|0 +|/ 1640054 1640591 1640368.6 1639285 1640810 + gene protein_coding_gene FALSE TRUE AT1G05540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30160.2); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.314004761059842 -2.38022309723850 0.0367160148607076 1 1.65994618502229 6.92444338822248 -0.314004761059842 0.171699894980322
AT1G33040_at 7.93561577174796 8.16369529634793 7.64614744803326 7.42565024765692 8.0995401737868 7.65834136788242 8.54293131684453 8.5830385861069 8.46440525788081 8.64018085724931 8.87762091408104 9.07576657887592 8.63136277748296 8.56134215618355 9.21502733250817 8.66335922335778 8.34442470405278 8.55995567176868 8.73789985215224 0.124506405696209 0.128116628052549 0.135009057210134 0.131232832186093 0.119481534044131 0.134198156456617 0.120061587030953 0.121476977890781 0.135437647273825 0.121588096242069 0.130480596952989 0.119154538518096 0.126858966643953 0.125294650848595 0.118638647643572 0.120860356763947 0.123615298864436 0.126111479210956 0.122565843158217 1 1 + 11967174 11967637 11967446.091 11966450 11967823 + gene protein_coding_gene FALSE TRUE AT1G33040.1 nascent polypeptide-associated complex (NAC) domain-containing protein Identical to Nascent polypeptide-associated complex subunit alpha-like protein 5 (NAC-alpha-like protein 5) (Alpha-NAC-like protein 5) [Arabidopsis Thaliana] (GB:Q8LGC6;GB:Q9MAN9); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.2); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABE85161.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.235977501363622 -2.37951760741806 0.0367616543001496 1 1.65886845350124 16.6845047304923 -0.235977501363622 0.094295621134149
AT1G59900_at 10.7563673872160 10.8166369220282 10.9889557352954 10.8719952509367 11.0749307275439 10.9883444935550 10.6176157105231 10.6239473228993 10.4617600219565 10.6272384406580 10.6970065832377 10.5203340413088 10.5427167132601 10.5981737036131 10.6325321885844 10.6249253042912 10.5686681101353 10.6802819731260 10.3869447693478 0.0638372477484528 0.0599385730430505 0.0613414526004356 0.0636434117711697 0.0631507167538466 0.0634442500943813 0.0623391843326421 0.0651753818585187 0.0765183315412847 0.0615786945791673 0.0623835095697801 0.0605372900663799 0.0621656967476032 0.0643083282114694 0.064402264053981 0.0608954361887321 0.0699568587668933 0.0631046223484651 0.0626350025803452 1 1|0 +|/ 22055660 22057141 22056374.444 22054960 22057550 + gene protein_coding_gene FALSE TRUE AT1G59900.1 AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit); pyruvate dehydrogenase (acetyl-transferring) encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC) Identical to Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) [Arabidopsis Thaliana] (GB:P52901;GB:Q9C5E3;GB:Q9SXC2); similar to IAR4 (IAA-conjugate-resistant 4), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G24180.1); similar to pyruvate dehydrogenase E1 alpha subunit (GB:AAA86507.1); similar to Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial precursor (PDHE1-A) (GB:P52902); similar to pyruvate dehydrogenase [Citrus x paradisi] (GB:AAY86036.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) 0.196756733019962 2.37909711247565 0.0367888830785702 1 1.65822612726259 21.3923796460074 0.196756733019962 0.0272798252794851
AT4G15660_at 4.93812875190091 5.79032618051726 5.26192124140396 5.74440732328832 6.40379827036701 6.09661872266459 5.27831471547844 5.91588672663199 7.38183222328052 7.57938489641771 8.21689179050951 8.35866692165413 6.42998185422579 7.3658800660719 8.23788629687023 7.57311491532068 7.20017441168034 7.80741339368563 7.0253912544687 0.201647319627684 0.189312738221575 0.196999497700709 0.191495003739123 0.185055622973642 0.196047024081661 0.192447200014685 0.185055622973642 0.194244693037693 0.185055622973642 0.185055622973642 0.192699775397725 0.187491355542638 0.188798253125218 0.191990461021875 0.189565836443270 0.189199398821331 0.187500764866067 0.185055622973642 4 4 + 8925961 8926206 8926041.909 8925804 8926308 + gene protein_coding_gene FALSE TRUE AT4G15660.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S8 (AtGrxS8) (GRXS8) [Arabidopsis Thaliana] (GB:O23417); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15670.1); similar to Glutaredoxin-like family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99336.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.357952021997724 2.37905111911434 0.0367918625252996 1 1.65815587186559 13.1674855736855 0.357952021997724 0.209094913005428
AT3G51210_at 1.31798592325237 1.50741907977357 1.65802238535479 1.86924490904382 1.00031352238504 1.21069556216874 1.06374129383658 1.2440323197019 1.29584220911484 0.783104917114891 1.30345337411817 1.26716960172799 1.40836618470013 1.55414644956690 1.11034467614819 1.48893994777986 1.23407818412367 1.33484018685386 1.08776317726586 0.189812607411735 0.196432132545535 0.192599390839194 0.189614980215273 0.193458984964951 0.193037162471170 0.188868273180749 0.188868273180749 0.191413554828839 0.198032998663385 0.198832060442266 0.193586223880427 0.193627720706506 0.188868273180749 0.202349869083154 0.188868273180749 0.197379520380424 0.197831087308840 0.188868273180749 3 0|3 /|+ 19031979 19032155 19032058.2 19031865 19032180 + gene protein_coding_gene FALSE TRUE AT3G51210.1 flavonol 3-sulfotransferase-related similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT5G43690.1); similar to steroid sulfotransferase 4 [Brassica napus] (GB:AAR14296.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.216685832529569 2.37880167818212 0.0368080253708976 1 1.65777485367671 2.55555058783587 0.216685832529569 0.0686277571870239
AT3G26880_at 1.08008444282969 1.52837094368336 1.41844408454108 1.63581784483214 1.08632330188639 1.14635561033057 1.01226835915268 1.76134708072612 1.88196448951043 1.6649409112311 1.41692167111327 1.05573481881983 1.03625142279634 1.28747491367223 1.01257487511854 1.12696920841957 1.44343493913721 1.51203983030932 1.86882054857561 0.184686917999856 0.190019294695595 0.17741241160753 0.191977485119123 0.183439693605459 0.178550945854779 0.181509933856900 0.189478815550640 0.186700983331758 0.176394101563823 0.186781538842599 0.184805529765777 0.181890422899954 0.183746620395894 0.188573797183736 0.178738446781382 0.189119445889575 0.180497412350675 0.185154826004744 3 3 - 9907586 9907944 9907764 9907571 9907972 - gene protein_coding_gene FALSE TRUE AT3G26880.1 self-incompatibility protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28305.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) -0.296299634691422 -2.37872418219108 0.0368130482259958 1 1.65765648140882 2.85446005501226 -0.296299634691422 0.156031112501960
AT4G02195_at 5.02921538181214 4.1623762167168 4.31343280374365 4.21471510807210 5.03571350115345 3.97329217743349 4.75736686913123 4.44895456175581 4.16283561361385 4.17328953732166 3.93289760797002 3.89573848444879 3.5760371547468 3.79461049877197 3.76840146162091 3.55281970692108 3.58118594127421 3.27550899688534 4.44053725775048 0.22108817050426 0.228470794761845 0.221470905823038 0.224081245393413 0.225147649304822 0.235621513635622 0.219517115855761 0.223448294477970 0.228324378670494 0.219517115855761 0.219517115855761 0.221594667766135 0.235243579232376 0.222121562170148 0.222184424081386 0.221709127855380 0.219517115855761 0.230792649369110 0.222519096873364 4 4|0 -|/ 970143 971582 970763.125 970007 972307 - gene protein_coding_gene FALSE TRUE AT4G02195.1 SYP42 (SYNTAXIN OF PLANTS 41); t-SNARE member of SYP4 Gene Family Identical to Syntaxin-42 (AtSYP42) (AtTLG2b) (SYP42) [Arabidopsis Thaliana] (GB:Q9SWH4;GB:O04258;GB:Q9SBD4); similar to SYP41 (SYNTAXIN OF PLANTS 41), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G26980.2); similar to putative syntaxin of plants 41 [Oryza sativa (japonica cultivar-group)] (GB:BAD67916.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) -0.400963673867714 -2.37847186058093 0.0368294069054317 1 1.65727107595457 8.45740205304828 -0.400963673867714 0.243817534625024
AT2G05755_at 3.86856959995588 3.92563501166544 3.21599462237404 3.16132516843864 3.85821173101351 2.56403647118529 3.80389096505492 3.89547076019782 4.01080937541754 3.68110405174383 3.95337660035214 4.30214734302791 3.89138455313789 3.87831590160366 3.68371306184753 3.99603999133694 3.64753691305037 3.97622880363502 4.29969872864158 0.299001998683651 0.293830237283996 0.310071385082214 0.308415909186739 0.283891176326415 0.297032185810661 0.283891176326415 0.288836755397464 0.295577035889088 0.295175107532959 0.291988867756468 0.283891176326415 0.285128064966938 0.294746894321548 0.299558292150474 0.283891176326415 0.30106873289574 0.287624249084063 0.289473019800476 2 2|0 +|/ 2172389 2173593 2173124.778 2170880 2173757 + gene protein_coding_gene FALSE TRUE AT2G05755.1 integral membrane family protein similar to hypothetical protein VAS14_11394 [Vibrio angustum S14] (GB:ZP_01233459.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.377305370950515 -2.37839378254362 0.0368344703408092 1 1.65715181865833 7.49329026520232 -0.377305370950515 0.224939223464186
AT1G71060_at 1.93696318676726 2.22897019085524 1.86258032708128 2.05700640873299 2.01385000845863 2.10751654061796 1.36517720948456 1.71485551549491 1.01740871247755 1.6912915353285 1.73815774017998 1.62529447015311 1.45711427094263 2.25847020736034 1.89807127815960 1.84931467999645 1.69456485926934 1.94686246578746 1.93232838508683 0.211861382969393 0.225406617608169 0.223734993206355 0.212449742726773 0.221852787157674 0.211861382969393 0.218732426424271 0.227160671756873 0.224458302976825 0.220522661110931 0.213459432752405 0.220933170419061 0.223730813839595 0.217969337368895 0.211861382969393 0.217178858565140 0.226358941243642 0.217152836314681 0.216200687643963 1 1 - 26809390 26809844 26809629.636 26809313 26810845 - gene protein_coding_gene FALSE TRUE AT1G71060.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98845.1); similar to putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] (GB:AAK71569.2); similar to Os01g0505500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043145.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.230109248877857 2.37799032951522 0.0368606454218279 1 1.65653559502414 3.58861031882597 0.230109248877857 0.087237048031989
AT1G79650_at 4.83522022251766 4.37350219774536 5.14081626164431 4.38718091457566 4.4368609121666 4.66816981150903 4.43366719118724 4.23129640028700 4.49756434760003 4.2056002638296 4.70762134978294 5.01403276753342 4.64453927058612 4.69394684784872 5.06320300916772 4.71806936624974 4.76143686183926 4.1219501502518 4.19733123556824 0.208060456056818 0.201762752352710 0.206836390985502 0.196336756093485 0.201458676336871 0.20618519124544 0.199823818458378 0.199457383662651 0.204777721814808 0.202674744917286 0.200989958043505 0.200583873998812 0.196879195694604 0.196336756093485 0.205548852189318 0.20329093388322 0.201477082696245 0.197308723011244 0.208664223845688 1 1|0 -|/ 29977358 29978482 29978051.333 29977001 29980174 - gene protein_coding_gene FALSE TRUE AT1G79650.1|AT1G79650.2|AT1G79650.3 RAD23; damaged DNA binding putative DNA repair protein RAD23 Identical to Putative DNA repair protein RAD23-1 (RAD23-like protein 1) (AtRAD23- 1) (RAD23-1) [Arabidopsis Thaliana] (GB:Q84L33;GB:Q84L34;GB:Q8LA46;GB:Q94CE9;GB:Q9MA10); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT1G16190.1); similar to RAD23 protein, isoform II [Daucus carota] (GB:CAA72742.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|Identical to Putative DNA repair protein RAD23-1 (RAD23-like protein 1) (AtRAD23- 1) (RAD23-1) [Arabidopsis Thaliana] (GB:Q84L33;GB:Q84L34;GB:Q8LA46;GB:Q94CE9;GB:Q9MA10); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT1G16190.1); similar to RAD23 protein, isoform II [Daucus carota] (GB:CAA72742.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.302635071307213 2.37730265624166 0.0369053016498945 1 1.65548531948675 9.07122185657415 0.302635071307213 0.161934001624765
AT1G22310_at 4.38608327163436 4.79536366219542 4.13530749405949 4.21818081029358 4.49681822251051 4.24741826615699 4.15701076261969 4.28216976796719 4.01580807284688 4.5821418660477 4.43124442729303 4.33069352851103 4.36902954632906 4.33944485323465 4.48859992824534 4.35597606465738 3.60936202298702 3.56935979213419 4.94869812097066 0.201847961406119 0.198799743847767 0.192443190855551 0.196535070258409 0.200061489661825 0.192443190855551 0.20163831067528 0.200051266565532 0.192443190855551 0.200756624445294 0.193902178704195 0.203595073502509 0.192443190855551 0.204538734758369 0.196045342647417 0.195538013135613 0.202422539256344 0.196853212803677 0.192443190855551 1 1|0 -|/ 7881712 7882534 7882020.8 7881526 7883731 - gene protein_coding_gene FALSE TRUE AT1G22310.1|AT1G22310.2 MBD8 (methyl-CpG-binding domain 8) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. similar to Os08g0485700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062090.1); similar to Os08g0485600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062089.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD22251.1); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.229780625356734 -2.37721512672520 0.0369109894194198 1 1.65535164196736 8.69092559403584 -0.229780625356734 0.0869147196990038
AT3G01920_at 8.76730462957294 8.49007893871937 8.88821118434281 8.58168580313241 8.81135141576643 8.56835398410069 9.28471611367306 9.16102477087519 7.49488173013756 8.35783776198152 8.8986133303212 8.8822954947193 8.45193029858317 8.47218673819997 8.8124801471893 9.25478621334192 8.22856340069682 8.22789858143364 8.09529739583135 0.242519349337462 0.228418376962842 0.230042071107073 0.228418376962842 0.228418376962842 0.246631649075088 0.234793926415148 0.228418376962842 0.256445029256189 0.242028818768491 0.230509225623513 0.228418376962842 0.228850484094302 0.243244958173928 0.234295587854929 0.228418376962842 0.270392458771486 0.245510392077051 0.240654655525413 3 0|3 /|+ 317869 318636 318311.429 317439 319128 + gene protein_coding_gene FALSE TRUE AT3G01920.1 yrdC family protein similar to yrdC protein-related [Arabidopsis thaliana] (TAIR:AT5G60590.2); similar to RNA binding/translational regulation protein of the SUA5 family (ISS) [Ostreococcus tauri] (GB:CAL55017.1); similar to Os08g0531300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062333.1); contains InterPro domain Sua5/YciO/YrdC/YwlC; (InterPro:IPR004388); contains InterPro domain SUA5/yciO/yrdC, N-terminal; (InterPro:IPR006070) 0.228770731601319 2.37670790039191 0.0369439663251887 1 1.65457701539714 17.1372241407949 0.228770731601319 0.0856855126860342
AT1G22290_at 0.457881273633793 0.75330547300233 0.746027286479023 0.556682414514207 1.02887525294467 0.762782491925084 0.900510107960957 0.759692315888089 0.422012032946609 0.429913085659734 0.619963825307165 0.969302096230828 0.940426957554482 0.964322627690893 0.784433475071763 0.54653519094763 0.383334321077757 0.513201277916698 0.114127792470434 0.213894449625457 0.214875764257164 0.216662556944661 0.218287440085443 0.213894449625457 0.213894449625457 0.215556840402415 0.224355316937202 0.225820623483085 0.215089225021372 0.221483112945568 0.217239601930059 0.21827255585383 0.223659453264619 0.223075471705499 0.216046424220892 0.223251681293635 0.22332127181048 0.220813330521299 1 1 - 7877117 7877869 7877464.182 7876955 7877904 - gene protein_coding_gene FALSE TRUE AT1G22290.1 14-3-3 protein GF14, putative (GRF10) similar to GRF10 (GENERAL REGULATORY FACTOR 10), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G22300.3); similar to 14-3-3 protein 7 (GB:P93212); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) 0.224458451646757 2.37666239674546 0.0369469261045575 1 1.65450752505077 1.26432338129364 0.224458451646757 0.0800107802086794
AT1G29510_at 5.9395547342337 6.83642812034089 4.1278073964598 5.61262545261606 6.75829012111232 6.60123925311658 7.52622701688643 8.28605451746457 7.96026896408057 8.11253215521324 9.01392529718437 9.2626420332626 9.16159750309063 8.90360679481332 8.81788407264373 9.28558823196876 7.66674192799172 8.80223621065156 9.47271279349461 0.279131790970698 0.26401669751479 0.286186910760465 0.289936645880844 0.266663082606891 0.262448143527658 0.264980965924338 0.264247534210054 0.257081215632388 0.261884587891120 0.257081215632388 0.259595097737334 0.257081215632388 0.261793105679059 0.263532339278716 0.26538015881117 0.276018686480153 0.257081215632388 0.257081215632388 1 1 + 10322852 10323055 10322995.4 10322560 10323175 + gene protein_coding_gene FALSE TRUE AT1G29510.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G29450.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.51148454335859 -2.37653646170343 0.0369551187342546 1 1.65431520655918 15.1507528581356 -0.51148454335859 0.328852555962558
AT1G74270_at 8.8916481666293 9.0094672180469 8.72002484159235 8.58584550238416 8.52878964634026 8.41417149462783 8.4637469339319 8.50344223982354 8.18627543395262 8.28052835806304 7.86404285789066 8.53285710418019 7.8735418944771 8.0929644657274 8.690690331721 7.6590246845576 7.89724944010381 7.83072742668363 8.43356249986143 0.165828120394797 0.168494037005882 0.17209198152767 0.172980263911980 0.173998715774325 0.182876341187417 0.173714529649439 0.171914574493306 0.175432357852176 0.171115790929594 0.174528115139293 0.166632575090581 0.178069572322269 0.169400201999665 0.171752806022104 0.170931256475495 0.173655816300944 0.173980416586359 0.170499034178858 1 0|1 /|- 27932082 27932835 27932336.667 27931853 27933158 - gene protein_coding_gene FALSE TRUE AT1G74270.1 60S ribosomal protein L35a (RPL35aC) Identical to 60S ribosomal protein L35a-3 (RPL35AC) [Arabidopsis Thaliana] (GB:Q9C912); similar to 60S ribosomal protein L35a (RPL35aA) [Arabidopsis thaliana] (TAIR:AT1G07070.1); similar to ribosomal protein L33 [Castanea sativa] (GB:AAK25760.1); contains InterPro domain Ribosomal protein L35Ae; (InterPro:IPR001780) -0.199926544998224 -2.37619095160092 0.0369776047426204 1 1.65378758238594 16.8172716919020 -0.199926544998224 0.0373567511374557
AT3G05140_at 0.79117989945137 0.604192797810596 0.697189471610617 1.05801562591935 0.515608083821201 0.680089325583343 0.234784424869616 0.611458187182111 0.545187896459165 0.290861633574438 0.577250531659053 1.09808876597632 0.351147782193138 0.870017023526073 0.659580779993816 0.435923880759471 0.960718119061557 0.802524372608681 0.411269216751198 0.222684635826121 0.220986924908503 0.227016390689512 0.223412465550327 0.225598611285823 0.220103368959708 0.224063082518412 0.225418820899824 0.221772001161337 0.232285598152654 0.228157377307719 0.230149349157865 0.226147418647319 0.227332111372334 0.225266172231493 0.220216775435425 0.221196799490975 0.228975713421385 0.234177404147752 3 3|0 -|/ 1436118 1436657 1436357.667 1435704 1438347 - gene protein_coding_gene FALSE TRUE AT3G05140.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18910.1); similar to putative receptor protein kinase PERK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD45880.1); similar to Os06g0663900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058295.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.240477645391268 2.37594016757118 0.0369939342345950 1 1.65340462495600 1.21665438831462 0.240477645391268 0.100027525600697
AT1G68080_at 3.37467973487057 3.20877397448331 3.14419739710953 3.47308385538991 4.36168806926088 3.56858693650376 3.38599031830712 3.47778937964962 3.66567837189226 3.41041913895484 3.63951576498915 4.24298544075925 3.83226293351825 4.03464777626467 3.60564936639564 3.83783206655687 3.4175038691283 3.59593048561832 3.32683236255917 0.213658524910603 0.200505863733659 0.219485814327021 0.208316364892758 0.199825617650222 0.208235570010390 0.194740815909810 0.196651080500854 0.213455686665264 0.19960936240859 0.201366491826967 0.198724007213135 0.21418349626916 0.203422465660050 0.203599946095034 0.197460588646793 0.207674040007985 0.198904909554062 0.203063295251912 1 1|0 +|/ 25522216 25522836 25522551.6 25521074 25523103 + gene protein_coding_gene FALSE TRUE AT1G68080.1|AT1G68080.2|AT1G68080.3 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors| similar to Os03g0238700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049501.1); similar to hypothetical protein SwitDRAFT_3374 [Sphingomonas wittichii RW1] (GB:ZP_01607997.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620)|similar to Os03g0238700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049501.1) 0.291614192253375 2.37488867742774 0.037062476913369 1 1.65179906427564 7.12106583521645 0.291614192253375 0.152162932047255
AT1G22900_at 4.36198220285234 4.58593552926536 2.87382169893005 3.18414038136282 3.40302494712834 3.31677183410156 3.51760437488807 3.45201825167997 2.44603639501499 2.46201288756031 3.18606231780244 3.25151765928687 2.35380196769812 2.53313413793224 3.13661334354236 2.21250119427531 3.18807027543112 2.77864568500388 2.52537454537046 0.260279181654153 0.267180942796737 0.249392185269976 0.245017521327181 0.245019141593043 0.260676903016445 0.246512861140956 0.244069913841665 0.255016185240086 0.245877092572481 0.247809509051892 0.243987847280025 0.246231745316349 0.253063266535053 0.245150155133002 0.247592254726783 0.264062469480098 0.260067745308220 0.244830366941694 1 1 - 8103979 8104405 8104215.909 8103648 8104494 - gene protein_coding_gene FALSE TRUE AT1G22900.1 similar to disease resistance-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G42500.1); similar to dirigent-like protein pDIR12 [Picea glauca] (GB:ABD52123.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) -0.216354997158893 -2.37370791289906 0.0371395933645618 1 1.6499963170573 6.24083803516113 -0.216354997158893 0.0688300676870984
AT1G43700_at 9.56816291229205 9.60804971280458 10.0528958597568 10.0047544304370 10.4345835340892 10.1810340008485 9.9086856589301 9.56387296932247 9.26105886418087 9.63177438774455 9.55780233110316 9.31610186307268 9.5967889207145 9.52889497150396 8.93768412113748 9.49101889612283 9.8136666590488 9.28659100835793 9.62601596114035 0.103543745139480 0.102248523540500 0.107007409919128 0.108428563542549 0.10859374058886 0.108536683735713 0.108046935247698 0.107542070684790 0.127061733125316 0.107398521953959 0.104407910088647 0.104752321201978 0.108043530963305 0.109914881665232 0.106961451765602 0.102248523540500 0.106677872597780 0.113557925940210 0.104251765454764 1 1 + 16487251 16488418 16487897.818 16486671 16488681 + gene protein_coding_gene FALSE TRUE AT1G43700.1 VIP1 (VIRE2-INTERACTING PROTEIN 1); transcription factor Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. similar to bZIP transcription factor, putative (bZIP69) [Arabidopsis thaliana] (TAIR:AT1G06070.1); similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31370.5); similar to bZIP transcriptional activator RSG [Nicotiana tabacum] (GB:BAA97100.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.220454834153143 2.37366630639609 0.0371423135478123 1 1.64993279781118 19.3889307185124 0.220454834153143 0.074853236161546
AT4G14820_at 2.18338655048233 2.11321277408222 1.463494567996 1.81750373308383 1.91826474046510 1.57814087507058 1.77656135898362 2.14492102901859 1.88291789225307 2.14050167394582 1.59962076569688 2.12964502004563 2.30036981363867 1.99207417563664 1.90572097528787 1.59877144583303 2.24245184823383 2.06851500348069 2.31231955630021 0.217240491459171 0.216342512067947 0.215115027682867 0.218611013855705 0.221512385858487 0.214770291941391 0.220728596341902 0.218986941688302 0.220809805590794 0.223576475266644 0.216176919376592 0.214770291941391 0.219647082694361 0.217210230627561 0.215777708738682 0.214817769775145 0.224236668795388 0.226926031552931 0.220838211446462 4 4 - 8507874 8508331 8508089.364 8507789 8510033 - gene protein_coding_gene FALSE TRUE AT4G14820.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.246218179419596 -2.37281989717993 0.0371976927423226 1 1.64864067272883 3.92021528955513 -0.246218179419596 0.106905201496194
AT3G49750_at 1.40286228140845 1.48241717438186 1.09979405965736 1.07760389557304 1.27965496083983 1.69813635284237 1.71166195198447 1.92936309753831 1.86206286209947 1.98789399954718 2.00830187826666 1.71547867982054 1.70999183426293 1.64631263421402 2.17584632597064 1.95858107640361 1.83499088149588 2.05633249956786 2.14361664476241 0.197180224879675 0.201891850638207 0.196366695007468 0.196366695007468 0.200497336421873 0.199611944739211 0.198806061408191 0.198462758402729 0.203723700067343 0.204522892761194 0.196366695007468 0.196871037144912 0.19884531514671 0.202516626496782 0.205208393326781 0.196366695007468 0.200808053104871 0.198808678374493 0.207788864770964 3 3 - 18461722 18462129 18461946.818 18461413 18462479 - gene protein_coding_gene FALSE TRUE AT3G49750.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G65830.1); similar to Os09g0131200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062623.1); similar to receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAX95167.1); similar to Os04g0487200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053144.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.226203584159769 -2.37243817312084 0.0372226945325117 1 1.64805797128513 3.40323037763819 -0.226203584159769 0.0828752711623304
AT1G74690_at 7.51712652939296 7.68232856004726 6.12163313503266 6.41690916193837 6.73978392875908 6.46126362640201 7.68838724463613 7.5843854986663 7.76022790094598 7.42324678601817 8.76050715356336 9.12508476442324 8.00351522359259 8.18825476901482 9.00863255930014 8.05782570020408 7.27283040015413 8.64817113092244 7.75132792448878 0.210671719879713 0.208387580886733 0.228302317520112 0.210910693927868 0.209720239361527 0.217204178112664 0.214388066353600 0.207785298685052 0.217914713071574 0.212382140286238 0.205387090354956 0.208621442156049 0.206271499070481 0.206476664312043 0.210488061109452 0.206518189721511 0.210605369924748 0.206930267260253 0.206103486184337 1 1 - 28065386 28065853 28065626.909 28064820 28068286 - gene protein_coding_gene FALSE TRUE AT1G74690.1 IQD31 (IQ-domain 31); calmodulin binding similar to IQD30, calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G18840.2); similar to IQ calmodulin-binding re (GB:ABE84487.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.222495493161712 -2.37187582334209 0.0372595564662975 1 1.64719958684686 15.0404956688416 -0.222495493161712 0.0779456273721935
AT1G04510_at 6.91067664796163 7.27059606004014 7.24951346204543 6.85110328787122 7.49031943455647 7.17248833551664 7.46274369556332 7.66500812804093 6.10451850782323 5.88825015569464 5.53267443728727 6.12072383086843 6.0022813970369 5.91477655595588 5.89858193352752 5.8474995101912 5.28515558383029 5.52146643468849 6.40705202098553 0.221816737912541 0.218439457289841 0.226152222579707 0.224535430212159 0.222970482837367 0.219565932152905 0.227062473217146 0.219584243598652 0.220381596973505 0.225255271938854 0.218582597490038 0.222384403798896 0.221714703834622 0.22474198320361 0.227318631755472 0.218415043372353 0.235685053714548 0.224059974181722 0.221802174880335 1 0|1 /|+ 1229549 1230487 1230008.125 1226574 1230826 + gene protein_coding_gene FALSE TRUE AT1G04510.1|AT1G04510.2 transducin family protein / WD-40 repeat family protein|nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33340.2); similar to Os10g0466300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064804.1); similar to hypothetical protein MtrDRAFT_AC146759g5v1 [Medicago truncatula] (GB:ABE87995.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain U box; (InterPro:IPR003613) -0.252139301990976 -2.37169391468644 0.0372714881256663 1 1.64692192775294 13.2083903924117 -0.252139301990976 0.113505940324384
AT3G09820_at 9.50036948583808 9.59220790407412 8.84852584190667 8.84262137658737 8.92946004165219 9.01443937613085 9.98829905321228 10.2126721177644 9.98186358894693 9.92683104296463 10.4511297956090 10.9528568045268 9.9494790786101 10.2011620570387 11.0507640848873 9.82212287528764 9.57161045242547 10.6027657022447 9.53832556526067 0.114744676122501 0.114994012090857 0.138102803825986 0.139388443363316 0.118707474709295 0.121673086368651 0.126046519338858 0.114129566577644 0.121334732887867 0.114129566577644 0.117840434231149 0.123808298171657 0.114129566577644 0.124001197328581 0.120102132967156 0.115847041747288 0.133098569502650 0.119134145831306 0.117545931781574 3 3|0 +|/ 3013508 3014583 3014136.2 3011995 3014949 + gene protein_coding_gene FALSE TRUE AT3G09820.1|AT3G09820.2 ADK1 (ADENOSINE KINASE 1) Involved in the salvage synthesis of adenylates and methyl recycling Identical to Adenosine kinase 1 (EC 2.7.1.20) (AK 1) (Adenosine 5'- phosphotransferase 1) (ADK1) [Arabidopsis Thaliana] (GB:Q9SF85); similar to ADK2 (ADENOSINE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G03300.1); similar to adenosine kinase isoform 2S [Nicotiana tabacum] (GB:AAU14833.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Adenosine kinase; (InterPro:IPR001805); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -0.202531261940813 -2.37157498653152 0.0372792908036504 1 1.64674040275672 19.4365292773388 -0.202531261940813 0.0444699701852115
AT4G14350_at 5.80731257917934 6.43246320405751 6.21092254406604 6.37491950030131 6.5758809500964 6.26276603773928 6.60473572725766 6.14793032664123 5.91553221022543 6.03895037660756 6.83101051004177 6.55743725464879 6.27264035629218 6.78773062209445 6.24174316445106 6.56636069257776 6.43515214535281 6.18600343002403 6.1085963353079 0.187552714611948 0.184412227634202 0.186760352979058 0.180877849734596 0.187918418546866 0.184200999604922 0.184217776340758 0.192407915991175 0.188418359525772 0.192535742118453 0.184611939015257 0.184332352010671 0.192522344688840 0.182465911292921 0.195214711824096 0.182752058722024 0.189761232285635 0.182455236525464 0.187141977805936 4 4 - 8256445 8258126 8257287.909 8256082 8260783 - gene protein_coding_gene FALSE TRUE AT4G14350.1|AT4G14350.2|AT4G14350.3 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT2G20470.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G23310.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G03920.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE90852.1); similar to protein kinase MK6 [Mesembryanthemum crystallinum] (GB:CAB82852.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95893.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.285872631660939 2.37066689517765 0.0373389214184308 1 1.64535441906342 12.5550093983252 0.285872631660939 0.147291828027788
AT3G49650_at 2.8014212916617 3.20934541085699 2.41355955034655 2.26132027881058 2.58618119300112 2.90794809601371 3.53744488141639 3.42440558028759 3.0349562248271 3.69638611748684 3.47157527611034 3.97989186344871 3.50820360450531 3.14251299936067 4.02705047582750 3.39142763684983 3.60307031111067 3.38521199772407 3.2743774683363 0.205445929248452 0.207856556826451 0.204319385766207 0.208683926460735 0.207720470491119 0.206326175387341 0.212555295568402 0.218036006170022 0.2061589170557 0.212121969287922 0.207686332450959 0.206377178376646 0.209387651873541 0.212748545214332 0.206125802744671 0.202926328035674 0.212502483882208 0.207673322327893 0.204988186721630 3 3 - 18416453 18416955 18416700.455 18415993 18420694 - gene protein_coding_gene FALSE TRUE AT3G49650.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G18550.1); similar to Os03g0773600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051417.1); similar to putative kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68884.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.236261963889478 -2.37049285960848 0.0373503601752893 1 1.64508881044839 6.3421322640496 -0.236261963889478 0.0957120127318012
AT1G18180_at 1.58282199920459 2.12389276401977 2.45795925447984 2.08878122100424 2.34317192730215 2.15090616724287 2.10325672269953 1.65714015784255 2.31096683829692 1.68725989755727 2.07696490321695 2.46297698005955 2.13019733997452 2.67147896201105 2.35290298221647 2.11874766722409 2.54077504107476 1.89913151914330 2.35144799364601 0.232620998012115 0.227024797117530 0.227240889228978 0.229120622100893 0.22921577610887 0.234979913366540 0.227118789511050 0.234093298752453 0.238391305414988 0.227827247546454 0.227250015686939 0.229578210544323 0.235482965545283 0.227024797117530 0.227024797117530 0.229004823930035 0.234741590318726 0.240986947097832 0.22958725997054 1 0|1 /|+ 6256766 6257549 6257172.111 6255823 6257893 + gene protein_coding_gene FALSE TRUE AT1G18180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73650.3); similar to hypothetical protein MtrDRAFT_AC139526g26v1 [Medicago truncatula] (GB:ABE80157.1); contains InterPro domain Protein of unknown function DUF1295; (InterPro:IPR010721); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.279257706382012 2.36969364277362 0.0374029335900640 1 1.64386912806479 4.26259386049035 0.279257706382012 0.141125638524536
AT1G15010_at 1.75043500063349 1.49928530066157 1.41957856953726 1.48102729304863 1.56124517182765 1.76033942896611 0.767958589030242 0.736521220829987 1.09086688070898 1.11155604171369 0.980549860251038 0.966959666427037 0.887047366240625 0.626301137567825 1.08582870636302 2.45953035458573 0.709104643701512 1.01545064858355 0.921110835870024 0.231759710369961 0.230418627620281 0.238242753228962 0.228897060386746 0.234105500653611 0.237508962857645 0.243206106006205 0.228897060386746 0.250406745156885 0.240566312679932 0.233283753895135 0.229838859271620 0.240664647863944 0.235490668826866 0.241775709397984 0.243525992466325 0.229278589110938 0.23830271752245 0.241434244509621 1 1 + 5171221 5171613 5171403.909 5171202 5171737 + gene protein_coding_gene FALSE TRUE AT1G15010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01300.1); similar to Os01g0121500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041876.1); similar to Os01g0121600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041877.1) 0.208583108295115 2.36944517754153 0.0374192925407734 1 1.64348996673511 2.43831105551484 0.208583108295115 0.0567342101464918
AT3G55690_at 1.35148813258171 1.41865028356812 1.19275168406024 1.33412536757049 1.17461051064243 1.31748686301662 1.62966486740242 1.30665701219403 2.04849224183632 1.98391530354062 1.90947681973910 2.04561601220116 1.77050879821968 1.8241269473707 1.98536690074859 1.74356772817990 1.14195968358140 1.86509261270775 2.09698589153759 0.220142309511226 0.222742274539964 0.230928295765212 0.221934378563069 0.226692212732350 0.226535501756531 0.221632826024918 0.232015554225519 0.234684792417358 0.221676298914763 0.217904044740575 0.227663353220399 0.216839818069745 0.222818435639989 0.23033139302839 0.224322129016184 0.231273968484468 0.226335991300632 0.224775292623902 3 3 + 20678420 20679003 20678657.909 20677951 20679484 + gene protein_coding_gene FALSE TRUE AT3G55690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39870.1); similar to Os05g0453300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055714.1) -0.214644087704382 -2.36902581173675 0.0374469193246064 1 1.64285003110303 3.25510213187037 -0.214644087704382 0.0668548936742548
AT2G47780_at 1.37512463976712 1.26858279122839 0.871622565795929 0.759119099342384 1.12543457059994 0.730620174978687 1.51009097446907 1.00081179066750 2.67328772629187 1.46897847172295 2.62841086775862 1.39541763857648 1.60241163504057 1.70439328959275 2.80996411654100 1.31763043249605 1.63631667631921 2.3458764195529 1.91444456482095 0.202125250666913 0.202457438140176 0.204143408674997 0.202817505197243 0.201745192969607 0.200199203787032 0.200108653764174 0.200108653764174 0.216319652550627 0.207230427802823 0.202247747193651 0.206631674230495 0.200130628466288 0.200108653764174 0.202465154718581 0.202573615612505 0.206765792168174 0.209464335023301 0.206754395635616 2 2 + 19577286 19577859 19577647.455 19577126 19578104 + gene protein_coding_gene FALSE TRUE AT2G47780.1 rubber elongation factor (REF) protein-related Identical to REF/SRPP-like protein At2g47780 [Arabidopsis Thaliana] (GB:O82246); similar to rubber elongation factor (REF) family protein [Arabidopsis thaliana] (TAIR:AT3G05500.1); similar to Stress-related protein (GB:Q9SW70); contains InterPro domain Rubber elongation factor; (InterPro:IPR008802) -0.252902199740505 -2.36845155010080 0.0374847823517901 1 1.64197377603205 3.05465393690444 -0.252902199740505 0.114693848929864
AT3G51840_at 10.8450867319122 10.9608333366611 11.2583718446169 11.3726509453033 11.6556185507812 11.4436420079974 10.8396288891818 10.7404593145301 10.761641199049 10.7197557735481 10.4973664055221 10.3477347890390 10.7747738269773 10.5693298221028 10.1688500437419 10.6999695318063 10.8858999917962 10.650153301993 10.7723858599304 0.0868773277052427 0.0824643023190544 0.0885902199990537 0.0895504556335811 0.0860079323790268 0.0865835861346 0.0849734585523777 0.082795624086538 0.0888745433212126 0.0857725342896228 0.0917579258531212 0.085198447449605 0.0843399266968657 0.0832149763919553 0.0871771914946254 0.0831374195051654 0.0878918086600766 0.0840672753118316 0.0824643023190544 3 0|3 /|- 19236639 19237718 19237329.5 19236337 19240140 - gene protein_coding_gene FALSE TRUE AT3G51840.1 ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis. Identical to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6) (ACX4) [Arabidopsis Thaliana] (GB:Q96329); similar to IVD (ISOVALERYL-COA-DEHYDROGENASE) [Arabidopsis thaliana] (TAIR:AT3G45300.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08201.1); similar to putative short-chain acyl-CoA oxidase [Tropaeolum majus] (GB:AAT11172.1); similar to Os01g0159400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042084.1); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase, N-terminal; (InterPro:IPR006092); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase; (InterPro:IPR006089); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type 1; (InterPro:IPR006090); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.204533769524959 2.36802534696078 0.0375129073746104 1 1.64132347466099 21.8022967817721 0.204533769524959 0.049320776101173
AT4G08180_at 4.7826645521815 4.04730557171681 4.5949341031615 4.59788992434109 4.27660639433851 4.56326021144293 3.67432470670293 4.37937246775556 4.3784015482809 4.49271625202716 4.84321699684122 5.1306685820358 5.02875829218324 5.13060595459483 4.56093473821661 4.93437822029193 4.84909194356673 5.10039450467976 4.87930486276108 0.236044815718045 0.238885765056566 0.250473262528290 0.237552549772298 0.232861201787280 0.236519321498046 0.233209668818579 0.232872306604167 0.243698152337585 0.232861201787280 0.238162158753867 0.233687319978720 0.236457958309100 0.253756548902442 0.238288318417606 0.232861201787280 0.236976654347140 0.233399519013599 0.235420215485971 4 4|0 +|/ 5172348 5173317 5172929.111 5169481 5173659 + gene protein_coding_gene FALSE TRUE AT4G08180.1|AT4G08180.2|AT4G08180.3 oxysterol-binding family protein similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22540.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT1G13170.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993)|similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22540.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT1G13170.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849) 0.325518883380013 2.36801568957453 0.03751354489977 1 1.64130873974303 9.12990992899226 0.325518883380013 0.183145830139465
AT2G17520_at 8.3953045750975 8.88532097167196 8.63446433546478 8.3924651154683 9.0504818670349 8.921531865393 7.90718724285363 7.87853724052064 7.86474044786043 7.23117586854331 7.64162770620581 7.35525069824687 7.65097015228408 7.51618914178545 6.7778090841198 7.7327432708552 7.64300616936301 7.72504972478444 7.44546580192309 0.170341721438819 0.167347102289773 0.180670857164219 0.179467081138989 0.176794264885196 0.176719760786350 0.168634702516204 0.173078336536907 0.175347935410313 0.178914959508324 0.177722640298937 0.172442457190109 0.177325179030212 0.165644454844803 0.192163924099796 0.165644454844803 0.197614710604847 0.186315655256004 0.170313338576173 2 2|0 +|/ 7627252 7627945 7627584.5 7624292 7628175 + gene protein_coding_gene FALSE TRUE AT2G17520.1 IRE1A (Yeast endoribonuclease/protein kinase IRE1-like gene); kinase Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. similar to protein kinase family protein / Ire1 homolog-1 (IRE1-1) [Arabidopsis thaliana] (TAIR:AT5G24360.1); similar to Protein kinase; PUG; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE78057.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Ribonuclease 2-5A; (InterPro:IPR010513); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PUG; (InterPro:IPR006567) 0.237342496158810 2.36793842715966 0.0375186456987816 1 1.64119085586257 16.0177240431370 0.237342496158810 0.0973005317370003
AT3G22170_at 7.71828996688352 8.13296032096041 8.24410500990037 8.28289088683812 8.9697124547109 8.24136095386075 8.17237663978283 7.92569870277174 7.70451597978491 7.46702064992299 7.51161434229886 7.80160045224687 7.89882424786386 8.08495394786818 7.28323664519815 7.89346582780965 7.32632416875808 7.55248011048117 7.43810794733078 0.203000029115195 0.191587490203752 0.197785062161881 0.192344240445404 0.196907880171969 0.213414021484975 0.192380226944023 0.191587490203752 0.210080738574646 0.196638194404734 0.194421109667673 0.191587490203752 0.200742220331224 0.193290880946461 0.198754248692830 0.195031658139031 0.214354995158779 0.192589090397857 0.208157641536360 3 3 - 7822366 7823543 7823075.3 7822025 7825891 - gene protein_coding_gene FALSE TRUE AT3G22170.1 FHY3 (far-red elongated hypocotyls 3); zinc ion binding A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1 similar to FAR1 (FAR-RED IMPAIRED RESPONSE 1), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G15090.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.289850097098644 2.36772988486321 0.037532416841573 1 1.64087267518745 15.8137296970445 0.289850097098644 0.15134140008918
AT1G50380_at 6.857973702722 7.01427975865166 6.3915474863234 6.52758982437023 6.13522417100477 6.22117417323605 6.19369079888789 6.21821853339817 5.25953029110738 5.64876681300607 4.81410505513835 5.5184080443834 5.64891292071456 5.1616995826831 5.12453953518453 5.72460907632756 6.47116001255067 4.76436196723751 5.74485971748445 0.179184952107456 0.178465097343619 0.175756499904142 0.176541332340389 0.171448557341588 0.173271161996759 0.176481203441424 0.183690874797720 0.177218572993894 0.173889746018279 0.176035186075864 0.179348299558706 0.173711469734847 0.176836361427950 0.172773144444553 0.16844605291337 0.174686458253009 0.173156448396887 0.172722207752433 1 1 + 18668870 18669827 18669290.818 18665977 18670146 + gene protein_coding_gene FALSE TRUE AT1G50380.1 prolyl oligopeptidase family protein similar to prolyl oligopeptidase family protein [Arabidopsis thaliana] (TAIR:AT1G69020.1); similar to oligopeptidase B [Triticum aestivum] (GB:BAE97779.1); similar to Os06g0730600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058657.1); contains InterPro domain Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller; (InterPro:IPR004106); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S9A, prolyl oligopeptidase; (InterPro:IPR002470) -0.199867267134913 -2.36752915532398 0.0375456766959667 1 1.64056642128825 11.9222257051460 -0.199867267134913 0.0390536925174456
AT1G18860_at 1.08062957941479 1.20882122168441 1.62172119442548 1.53239915089348 1.23836989715104 1.10180314828728 1.04648834298046 1.29519727348440 1.18622219059991 1.53718533819254 1.49934249342179 1.30876763370913 1.51897912120003 1.64905175425703 1.39191439294120 1.55672969214353 1.36160148567771 1.64010042265915 1.14837182924805 0.226207631855480 0.23150938143759 0.234067972658231 0.231246723189029 0.228593076635650 0.237909430211265 0.226999334287218 0.224918786601305 0.227983808758133 0.224918786601305 0.226295799534021 0.225099820044526 0.228153533999042 0.227323494383163 0.224918786601305 0.224918786601305 0.233884837200895 0.230679665851143 0.227120088047851 1 1 + 6510727 6511125 6510909.818 6509483 6511200 + gene protein_coding_gene FALSE TRUE AT1G18860.1 WRKY61 (WRKY DNA-binding protein 61); transcription factor member of WRKY Transcription Factor; Group II-b Identical to Probable WRKY transcription factor 61 (WRKY DNA-binding protein 61) (WRKY61) [Arabidopsis Thaliana] (GB:Q8VWV6;GB:Q9M9V5); similar to WRKY72 (WRKY DNA-binding protein 72), transcription factor [Arabidopsis thaliana] (TAIR:AT5G15130.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABE84469.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.208003499226332 2.36717082230028 0.0375693588627471 1 1.64001972710731 2.65638072296418 0.208003499226332 0.05605425516728
AT1G76650_at 3.47777055071267 3.49140430488322 4.72959713467775 4.32103875343051 2.73538671974450 3.09869635735416 2.23095257466660 2.93685371399176 2.44150684831665 2.40276690447004 2.05144146464180 2.04877469278645 2.11356219593357 2.34790914821312 2.63512503368513 2.3648084313791 1.93482724418689 2.55030654495022 2.22502753274980 0.254831758369798 0.272747453254066 0.289529378883444 0.281144570621939 0.253287721784423 0.248528836631662 0.254843533781750 0.259726659647229 0.251856939334710 0.252168546294820 0.253729251010602 0.248528836631662 0.254269424181731 0.257169750604863 0.248707457193219 0.253852984523603 0.256768781378274 0.253536879408423 0.248528836631662 1 1 - 28771803 28772302 28772085.818 28771644 28772411 - gene protein_coding_gene FALSE TRUE AT1G76650.1|AT1G76650.2 calcium-binding EF hand family protein similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G76640.1); similar to regulator of gene silencing [Nicotiana tabacum] (GB:AAK11255.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.293172518932353 2.36670251448464 0.0376003310775376 1 1.63930527981021 5.68385156684141 0.293172518932353 0.154532692960392
AT3G57090_at 9.54140204949835 9.49308719289112 9.72452601451347 9.6739507311793 9.60730825126606 9.5239252288844 8.90492421199387 9.17309496480132 9.09468935416931 8.90661692629308 8.90022248622186 8.81527322310045 9.20445380515676 9.15979314982392 8.64709652491627 9.07799154073527 9.00414525585328 8.8424945118921 8.70247856628907 0.0919231374584114 0.0936440138608047 0.092062218385592 0.0908952807010477 0.0894613196137133 0.0949758070090818 0.0891407233919664 0.0959979671517016 0.100933589556431 0.0940990475983518 0.0937002823348497 0.0903333354909618 0.087619513262176 0.0922600637483174 0.0960626101434871 0.0875075606570395 0.0967009073617177 0.0914237628517388 0.0911614930153141 3 3|0 +|/ 21139628 21140917 21140352.6 21139509 21141168 + gene protein_coding_gene FALSE TRUE AT3G57090.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G12390.1); similar to Tetratricopeptide repeat protein 11, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96021.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.204736324146656 2.36594954579077 0.0376501816576417 1 1.63815662941250 18.3841250445266 0.204736324146656 0.0500844431717732
AT1G44980_at 2.64896660875525 2.2329282262359 2.00024193245204 2.29590977672414 1.89146843159766 2.24353665660505 2.21993687308160 2.32147006556000 2.32673432675184 2.25609179334724 1.50576115183886 1.92652844390727 2.22258140568572 2.33831300127894 1.84282661526501 2.1738028148269 2.18154724441777 2.25831192226378 2.32429590099996 0.177887324218541 0.183496851819369 0.176644198943156 0.183567262434867 0.184553499782645 0.181180387454427 0.182924939656783 0.181678837547773 0.188301424122146 0.178298385949371 0.181088667381622 0.177491344388725 0.177237660865597 0.177331584732523 0.179589419923538 0.180311336818476 0.17783712162218 0.176456271810206 0.179668611784710 1 1 - 17006708 17007317 17006965.364 17006696 17008363 - gene protein_coding_gene FALSE TRUE AT1G44980.1 pectinesterase family protein similar to pectinesterase [Arabidopsis thaliana] (TAIR:AT4G03930.1); similar to pectin methyl esterase [Solanum tuberosum] (GB:AAF23891.1); similar to PME1.9 [Lycopersicon esculentum] (GB:AAB67740.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.247100588080474 -2.36547645537267 0.0376815355591045 1 1.63743497858938 4.41109886236073 -0.247100588080474 0.108731284215139
AT1G22130_at 1.18742824339258 1.25983047083364 1.91461743434878 1.64455740232935 1.24508280079904 1.15657044303497 1.12148965004307 1.64124110054046 1.50718083010589 1.67278475337732 0.726931027052773 1.00016696003264 0.90719994731544 0.884665513028952 0.75139004549334 1.06865040559246 0.844874697053776 1.27815430390816 1.63486022215619 0.213027501580786 0.216102317737540 0.211036208675859 0.212600959572196 0.208674478309997 0.208674478309997 0.212168784008566 0.208674478309997 0.212806413913948 0.214161678340004 0.211582065708812 0.219314212912180 0.208674478309997 0.208674478309997 0.209525484874881 0.210818734141990 0.208674478309997 0.212819659437954 0.228881070048821 1 1|0 -|/ 7812376 7813046 7812760.3 7812376 7814253 - gene protein_coding_gene FALSE TRUE AT1G22130.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G77980.1); similar to Os06g0223300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057183.1); similar to putative MADS-box protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10025.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.242239084426423 -2.36547621798303 0.0376815512983715 1 1.63743461648490 2.66520021698915 -0.242239084426423 0.103276162933776
AT1G15140_at 8.50483866022001 8.49915671668441 8.3429193415663 8.08499836834293 8.37247976117104 8.38176298362313 8.95291258556506 9.22955340052086 8.74707800843102 8.64061735347167 8.58229151905031 8.60720174250098 8.57693703498954 8.73123087308387 8.82768981257116 8.46974287979989 8.11767299800203 8.46591391898831 8.03151336635054 0.108164536234581 0.105010733486116 0.109240844079871 0.114548939175528 0.114098897426190 0.110729619788153 0.110204588208513 0.107187642517192 0.108922327358411 0.106177634957401 0.107487365477792 0.107611087348222 0.110203289631576 0.108437043577881 0.109720795619139 0.105616372018512 0.113128297615348 0.111245745060218 0.108230070208707 1 1|0 -|/ 5210587 5211819 5211416.889 5210201 5212344 - gene protein_coding_gene FALSE TRUE AT1G15140.1|AT1G15140.2|AT1G15140.3 oxidoreductase NAD-binding domain-containing protein similar to ATLFNR2 (LEAF FNR 2) [Arabidopsis thaliana] (TAIR:AT1G20020.3); similar to Phenol hydroxylase reductase [Medicago truncatula] (GB:ABE92236.1); contains InterPro domain Phenol hydroxylase reductase; (InterPro:IPR001221); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) -0.213404852891443 -2.36499905826325 0.0377132005433531 1 1.63670679477721 17.0562800639406 -0.213404852891443 0.0654805168172127
AT4G32130_at 6.06288277902541 6.887876071012 6.43109893416246 6.62831145046332 7.35166246690341 6.52243001385485 5.60666088461476 6.1487389447177 5.8519671306311 4.75884126679809 4.87784037763938 4.93640412525053 5.42065915896934 5.62321204517623 5.42792083141563 5.34828412643727 5.2676732805846 5.72316747121261 4.7878479931650 0.306900375574939 0.310112106443569 0.295275160243316 0.295275160243316 0.311596653022997 0.344534472698453 0.305812375803536 0.315017503850116 0.315638112183244 0.302179339326214 0.295275160243316 0.295275160243316 0.303102276179853 0.295275160243316 0.295867342093131 0.295275160243316 0.314885335682 0.302255301285425 0.295275160243316 4 0|4 /|- 15521416 15521465 15521437.333 15520037 15522599 - gene protein_coding_gene FALSE TRUE AT4G32130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25310.1); similar to Os06g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058183.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_794143.1); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969) 0.376047880028924 2.3645473446805 0.0377431857298245 1 1.63601782031022 11.6854730134028 0.376047880028924 0.225700821849553
AT2G01150_at 3.63851452164289 3.4774533220449 2.6940660672614 2.80725449537864 3.32907843234257 3.70543587881248 3.83702426508332 4.06211103366261 3.44015546217288 2.86760111436421 3.95052715312947 3.92246116030371 3.71717331462071 3.44980039086187 3.72043975474203 3.65768175724755 2.88903226731077 3.82510632587380 4.11142372344894 0.220328816044319 0.215958301082120 0.218522689615422 0.230226699502686 0.218727403004164 0.239505671371064 0.217596888592975 0.216388362446027 0.223244238642840 0.221377970730067 0.215958301082120 0.215958301082120 0.225488673497696 0.221226843147637 0.217578769397447 0.216991532035465 0.222861094684818 0.225162673351413 0.218677322448503 2 2 + 100720 101081 100927.455 100648 101494 + gene protein_coding_gene FALSE TRUE AT2G01150.1 RHA2B (RING-H2 FINGER PROTEIN 2B); protein binding / zinc ion binding Encodes a RING-H2 finger protein that is expressed in vascular tissue, root tips, embryos and pistils. Identical to RING-H2 zinc finger protein RHA2b (RHA2B) [Arabidopsis Thaliana] (GB:Q9ZU51); similar to RHA2A (RING-H2 finger A2A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G15100.1); similar to RING-H2 finger protein [Poncirus trifoliata] (GB:ABA42952.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.225674700821877 -2.36443080236783 0.0377509256713722 1 1.63584006990536 7.0011611847819 -0.225674700821877 0.0831853646506513
AT2G31470_at 1.39923039349737 1.68507884401094 1.12496959785694 1.51435415670584 1.22784379613277 1.62625913126427 1.58455562296141 1.60978971883043 2.40520764406125 2.42197971400294 1.93821998589687 1.88804075815285 2.2184937886278 2.01615667683366 2.25329517668260 1.89649396020838 2.02565471665678 2.36832766798451 2.29068840057832 0.17994508155057 0.180395133805954 0.177901230923354 0.180296119033495 0.177901230923354 0.190534773004391 0.177901230923354 0.186217277719388 0.196794849787329 0.180790201522029 0.181634403663938 0.181182210889154 0.192005985357540 0.179764812070081 0.186268118695802 0.18350565883548 0.193497555858325 0.177901230923354 0.187300113181356 2 2 - 13414680 13415103 13414861.636 13414569 13415732 - gene protein_coding_gene FALSE TRUE AT2G31470.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G65850.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.246673442917746 -2.36385373210749 0.0377892733983284 1 1.63495995421117 3.69561545478813 -0.246673442917746 0.108446222238335
AT2G01480_at 3.28231972475712 3.25736559428333 2.94336959790091 2.99706732788517 3.39778558296005 3.73941488655122 3.06820415378893 3.03435361358537 3.08504371809273 3.02022854485042 3.18388539756162 3.53856499532086 3.09509839079902 3.33870877129867 3.34287794133012 3.42689413084408 3.26815940586259 3.19314801622976 2.85601780566400 0.209298165373774 0.197907253822728 0.197394412132955 0.196951871518671 0.198269760615563 0.209102008763279 0.201513704036481 0.199366653711062 0.208144567905368 0.200358091871841 0.212881883056374 0.204483456963027 0.204602216920058 0.198272185476926 0.194925584204079 0.194925584204079 0.208457253865274 0.204155110072833 0.201575215476669 2 2 + 219363 220297 219915.545 216721 220988 + gene protein_coding_gene FALSE TRUE AT2G01480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14970.1); similar to Hypothetical plant protein [Medicago truncatula] (GB:ABE89193.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.210084509420389 2.3633077313782 0.0378255912408171 1 1.63412727343978 6.35774197055979 0.210084509420389 0.06028728622881
AT4G19240_at 1.10643285602928 1.17388079903351 0.85355677891655 1.02546810107719 1.21087653285976 1.01245089086656 1.16170479754610 1.54405447364754 1.10055850555521 1.14025851960486 0.839254716567118 0.841052352150986 0.928827574219144 0.656386898295576 0.198237809785827 1.36781473924474 1.44603448762530 0.913526483781802 1.13688301878808 0.207936461071923 0.205265662989713 0.206763551586966 0.207481582404519 0.207944176860517 0.205415453430722 0.212191269373421 0.213728089931941 0.215271740971895 0.205265662989713 0.211418858717847 0.210384292244474 0.209280061399444 0.208468866691308 0.212505978981923 0.205265662989713 0.222427812951986 0.219603882337909 0.205265662989713 4 4 - 10527845 10528376 10528089.091 10527811 10529103 - gene protein_coding_gene FALSE TRUE AT4G19240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43280.1) -0.223969143787331 -2.36288643092571 0.0378536376273602 1 1.63348480022322 2.14844910242616 -0.223969143787331 0.0811083297917118
AT3G09520_at 3.07786515387951 3.35514726853347 2.82853685171809 3.08673253777932 2.30353908973393 2.00239253470436 2.32353766667673 2.41285409383205 2.67449358051240 2.2536494438011 2.24768175099368 2.29421276469936 1.79891121128906 2.4818491246758 2.39378244852404 2.16614699121754 2.12608545358006 2.48536933049326 2.47027139503053 0.229144187459397 0.230140145790119 0.223028129368135 0.218311473522690 0.218311473522690 0.228067207216647 0.218852205911776 0.220829571795582 0.222242547694204 0.222484389119053 0.222403435037872 0.219024982057210 0.222543282884398 0.218959796499907 0.229481935206643 0.220218273840017 0.243103900077501 0.229893055630898 0.219804668036742 3 3 + 2925043 2925599 2925347.727 2923749 2925635 + gene protein_coding_gene FALSE TRUE AT3G09520.1 ATEXO70H4 (exocyst subunit EXO70 family protein H4); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70H3 (exocyst subunit EXO70 family protein H3), protein binding [Arabidopsis thaliana] (TAIR:AT3G09530.1); similar to Exo70 exocyst complex subunit [Medicago truncatula] (GB:ABE93798.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) -0.226967023796879 -2.36210163213019 0.0379059362085248 1 1.63228807705135 5.03152216171491 -0.226967023796879 0.0851698079344051
AT2G28080_at 4.66387677723456 5.66809777708591 5.04074076208264 4.81798813255461 3.92405841966289 4.02802085305781 3.1801583271157 3.12098422031395 4.01859152122679 3.93342926998387 4.05028851809462 5.43615714916894 3.67430534218895 4.26920658832493 5.11051505655764 4.53197753567577 3.87510988008338 3.82097918083507 4.04845003886536 0.241607366315766 0.246247685333919 0.237742270777014 0.238345912754569 0.23634207873833 0.235953968486660 0.252827371451654 0.24206546983722 0.242243963680244 0.247882787499487 0.238831167636960 0.240259626959792 0.245728946061650 0.247437065309723 0.240843331495842 0.242177084168556 0.252997282077527 0.24333475077845 0.247557374924196 2 2 - 11967871 11968415 11968209.636 11967648 11970370 - gene protein_coding_gene FALSE TRUE AT2G28080.1 glycosyltransferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36970.1); similar to UDP-glucuronosyl/UDP-glucosyltransferase [Medicago truncatula] (GB:ABE87218.1); similar to Os10g0442300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064696.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.320166614704723 2.36208789721359 0.0379068521194068 1 1.63226713385216 8.47860283350093 0.320166614704723 0.179208805116688
AT1G74970_at 9.07874505423575 9.20044856995683 8.3235698122414 8.34635940003777 9.02220114618522 8.88917644702708 9.19195136001847 9.42518565800527 9.812006348973 9.52898432357242 9.94471970015305 10.1607189918543 9.60065258178238 9.84566057115269 10.4191079019745 9.8500625631536 9.0622194708911 9.60796597785237 9.58613612041321 0.105945673693606 0.0979562876151782 0.107468420288534 0.101965206728804 0.100996173525126 0.101962880401509 0.105050538975828 0.101352071281864 0.104437285099425 0.100153911486578 0.0985491226087104 0.101229490516914 0.102636131193281 0.107513263750773 0.101272789209469 0.102687863320896 0.100595465274499 0.104244213713294 0.102678124701747 1 1 - 28161449 28162791 28162171.455 28161191 28162963 - gene protein_coding_gene FALSE TRUE AT1G74970.1 RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome ribosomal protein S9, nuclear encoded component of the chloroplast ribosome Identical to 30S ribosomal protein S9, chloroplast precursor (RPS9) [Arabidopsis Thaliana] (GB:Q9XJ27); similar to ribosomal protein S9 family protein [Arabidopsis thaliana] (TAIR:AT3G49080.1); similar to 30S ribosomal protein S9, chloroplast precursor (GB:P82278); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754) -0.204871543491173 -2.36116038027927 0.0379687531020799 1 1.63085291325562 18.6615867147158 -0.204871543491173 0.0511682929225786
AT3G18710_at 3.09994796387756 3.34764691889789 2.86790711088679 3.02551305689113 2.31917984825817 2.78678738447391 4.90413697909062 4.81385811190939 4.0744825583734 4.61530590997675 5.50612707460489 5.73659531218903 4.86790138668526 5.6005080076068 5.61787601497584 5.75047356686287 4.29898074713881 5.00580119857999 4.74713541542387 0.259509572296505 0.245181850970842 0.258004514931887 0.264046478789442 0.254921187414858 0.279129084903015 0.245374582142779 0.245181850970842 0.245181850970842 0.250816072632493 0.245181850970842 0.249905416023635 0.24578876762155 0.257172971630175 0.253063753844150 0.251170880678369 0.255644318145114 0.256004929920358 0.245181850970842 3 3 - 6434246 6434737 6434469.273 6434089 6435567 - gene protein_coding_gene FALSE TRUE AT3G18710.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09800.1); similar to U box [Medicago truncatula] (GB:ABE81171.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.236246178830302 -2.36104948620355 0.0379761605465668 1 1.63068383813252 8.28412594253824 -0.236246178830302 0.0968180896771421
AT1G76310_at 0.676902215779677 0.376236576884203 0.87609850470255 0.598471663524111 0.499877039084928 0.504404094517254 0.561775686452395 0.525300558817681 0.575257270528659 0.899011204724396 1.27242733650984 0.94841584753508 0.746446371491982 0.724187255601155 1.44407722890493 0.992537814520775 1.25848958418587 0.762930096682514 0.53551574970248 0.215950370237633 0.215950370237633 0.21674993204856 0.22060789121586 0.219982793545874 0.215950370237633 0.216781230623098 0.219942512091201 0.216452648871419 0.222095550379627 0.220267770566287 0.220287770988937 0.217251206753085 0.218717789422794 0.220312030746154 0.215950370237633 0.225369289425593 0.218173497531679 0.220140827132786 1 1|0 -|/ 28632940 28633750 28633358.3 28632940 28635093 - gene protein_coding_gene FALSE TRUE AT1G76310.1 CYCB2;4 (CYCLIN B2;4); cyclin-dependent protein kinase regulator core cell cycle genes similar to CYCB2,3 (CYCLIN B2,3), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G20610.1); similar to G2/mitotic-specific cyclin-1 (B-like cyclin) (CycMs1) (GB:P46277); similar to B-like cyclin [Medicago sativa subsp. x varia] (GB:CAA55272.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.216709966458781 2.36102568981556 0.0379777502677423 1 1.63064755712825 1.42169180092745 0.216709966458781 0.0711057625016795
AT4G23640_at 7.11112002382429 6.88051531591166 6.55590075309054 6.8502495493847 6.87760658684705 6.87075603665277 6.46582680239563 7.11970462316649 6.45945666403742 5.97532401034369 6.92801944032555 6.70885419968301 7.05912914310555 6.75332795385359 6.87687459303684 6.8693199985934 6.96497037565807 6.43329498782099 6.11739149010753 0.180438202566053 0.179648086706279 0.185334334425669 0.177590564820825 0.175602970002613 0.181835904139532 0.187078340070635 0.180931621022946 0.187273932477388 0.182346144093232 0.175875304484295 0.175602970002613 0.175917058272763 0.185361310185443 0.17752713209903 0.181045404242339 0.175602970002613 0.185237571837236 0.182860741697079 4 4 - 12320533 12321051 12320829.636 12320162 12324496 - gene protein_coding_gene FALSE TRUE AT4G23640.1 TRH1 (TINY ROOT HAIR 1); potassium ion transporter Functions as a potassium transporter and is required for the establishment of root tip growth. Identical to Potassium transporter 3 (AtPOT3) (AtKUP4) (AtKT3) (Tiny root hair 1 protein) (POT3) [Arabidopsis Thaliana] (GB:Q9FE38;GB:O22399;GB:Q9SUR2); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to putative high-affinity potassium uptake transporter [Populus tremula x Populus tremuloides] (GB:CAC39168.1); similar to putative potassium transporter [Cymodocea nodosa] (GB:CAD20319.1); similar to potassium transporter HAK4 [Hordeum vulgare] (GB:ABE99812.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.267251494257995 2.36100022698116 0.0379794513875351 1 1.63060873548919 13.3456005737454 0.267251494257995 0.130357712149199
AT3G19553_at 8.97741218749984 9.34131128292124 9.33213812138288 9.29148300929957 9.99348295847657 9.58954091558078 9.3671830573214 9.20718572721898 9.31919635370945 8.98277010379186 9.57450425261528 9.152207526929 9.08067190617657 9.55395233783604 8.81382858107914 9.20722850632138 9.00087835820363 9.247760238076 8.86989364049604 0.144796784396201 0.133488336552323 0.141737480765728 0.144535379436599 0.137889882968725 0.142384996841914 0.140495785709364 0.133488336552323 0.146102350883055 0.133649976513670 0.137656132272876 0.142684740326586 0.147856733628604 0.133488336552323 0.144071560794229 0.134898562439178 0.142931788690955 0.134208899865404 0.136486685005789 3 3 - 6791113 6791636 6791357.909 6790748 6792925 - gene protein_coding_gene FALSE TRUE AT3G19553.1 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31830.2); similar to putative amino acid permease [Oryza sativa (japonica cultivar-group)] (GB:AAR10855.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97257.1); similar to Os03g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050538.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.237490225758382 2.36074236267863 0.0379966829340876 1 1.63021559134936 18.5180499888312 0.237490225758382 0.0983285131934718
AT3G59470_at 4.54740808941317 4.30249311402319 4.56954755016962 4.32425142963585 4.89758361294032 4.64369884939506 4.24888936895211 4.0402346921873 4.02980903452689 4.3545455556264 4.56215463079574 4.09386984459602 4.39013658193964 4.13037828373834 4.79547817758638 4.34858991196045 4.31883238746808 4.3339556346848 4.35339211853185 0.180414117487549 0.189942961021055 0.180310398178526 0.178758774983315 0.190062343777080 0.184735534225322 0.197280842176996 0.177632909851415 0.186084082542942 0.190567119362481 0.181983481750871 0.183559655651042 0.180197456049467 0.181224011963251 0.182500819905133 0.178791691747681 0.189393676946073 0.183077609529429 0.18104746116277 3 3 - 21990082 21990893 21990597.545 21989938 21991521 - gene protein_coding_gene FALSE TRUE AT3G59470.1 far-red impaired responsive family protein / FAR1 family protein similar to far-red impaired responsive family protein / FAR1 family protein [Arabidopsis thaliana] (TAIR:AT3G07500.1); similar to FAR1; tRNA-binding arm [Medicago truncatula] (GB:ABE90592.1); contains InterPro domain FAR1; (InterPro:IPR004330) 0.224886453212868 2.36033117232610 0.0380241760274405 1 1.62958870610627 8.75555833891852 0.224886453212868 0.0826592443688508
AT1G20110_at 10.1322914772805 10.1780816968367 10.3656721212458 10.4453737920852 10.2828097966635 10.2739477917472 9.75564201166511 9.84070773054013 10.0986964895138 9.99898215222032 10.1580723609476 10.0115224059485 9.95383238231532 10.1445920267991 9.8249480445566 10.1050944913916 9.92976499580735 10.1657212874688 9.94582392702538 0.0873568293448883 0.0864889692301548 0.0935668387870043 0.0890550126597783 0.0908748778548365 0.0924500319927118 0.0915515401182292 0.0874427042440785 0.0969506030450535 0.085021837839653 0.0862205499419857 0.0833215880229895 0.0858538602929238 0.0857842317313042 0.092584155445899 0.0833511336020922 0.0935008587394305 0.0907823727377965 0.0864946540399609 1 1|0 +|/ 6973043 6974525 6973824.111 6971476 6974826 + gene protein_coding_gene FALSE TRUE AT1G20110.1 zinc finger (FYVE type) family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G23720.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G28550.1); similar to hypothetical protein [Phoenix dactylifera] (GB:CAA61964.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.193731394753005 2.35983495636426 0.0380573797888623 1 1.62883223057299 20.1849129800868 0.193731394753005 0.0217277089019491
AT4G08450_at 1.26533909435279 1.34175780062267 1.54785770810117 1.70382044374606 1.04393652707315 1.56940567665043 1.09810225648153 1.23848478544955 0.865895129138165 1.25416423100167 1.25578358826937 1.28241401275097 1.18315997280508 1.43940021056958 1.66058271629205 1.19080043335223 1.3467675266243 1.05749924594007 1.05086750572677 0.183588936320209 0.180953895875756 0.181659300635558 0.183815050520756 0.190095086308884 0.177873776748219 0.182276156254655 0.182401695424917 0.198035767286481 0.184702206942344 0.186011055461911 0.178407333451417 0.184340543209125 0.182176978767806 0.184493122079432 0.183189407760468 0.189653788372264 0.187382411871115 0.185879532199493 4 4 + 5370503 5370958 5370698.636 5365607 5371098 + gene protein_coding_gene FALSE TRUE AT4G08450.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G46450.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G46260.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G46470.1); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.237704723017994 2.35884222575399 0.0381238916447161 1 1.62731894425259 2.53060132920016 0.237704723017994 0.098806374526949
AT3G14410_at 5.60889177474423 5.95170016166345 5.96941130170317 5.41239401941104 6.44667073814839 6.20621829157611 5.86350803712651 5.65921553964516 5.70478513326726 5.28975172454186 5.96000749103672 5.50846463577889 5.68782041775810 5.94277446987194 6.08991525889128 5.22444548949052 5.77757315185844 5.69408911824563 5.35218021251123 0.197281153379258 0.190571658638018 0.190177103897618 0.195986926869374 0.189189422327101 0.200642316220766 0.189327127654137 0.197502963614780 0.206209911824762 0.190821268453950 0.188973267105412 0.199778590692127 0.188100633070146 0.189460769617113 0.187136267014166 0.189710368313536 0.200750617276039 0.192049351573396 0.189614251767579 3 3|0 -|/ 4816265 4816634 4816402.556 4815818 4817987 - gene protein_coding_gene FALSE TRUE AT3G14410.1 transporter-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G53660.1); similar to Os08g0135100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060938.1); similar to putative phosphate/phosphoenolpyruvate translocator [Sorghum bicolor] (GB:AAL73533.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.262287636712251 2.35811152051183 0.0381729200346066 1 1.62620518336847 11.4820222051139 0.262287636712251 0.125668985197684
AT1G19130_at 7.94288426262329 8.18081110132004 8.19524653820011 8.12894401940963 8.70533596801637 7.99959163411586 7.55420840803531 7.30386348264059 7.94082044846679 7.85314230608901 8.25067934624396 7.99690411993173 7.81246354629 8.01899833609564 8.06764149338367 7.8786892802982 7.37183012092855 7.94225369698913 7.85549529044459 0.141787698889427 0.137529216234445 0.144594178454076 0.141224698668337 0.147116504071356 0.149551487220319 0.139701039360933 0.143173819820726 0.147711721937496 0.144815414181599 0.138229136956813 0.135316340667189 0.148637474626277 0.141619276065180 0.146003746554572 0.139049638914278 0.175646869686566 0.141185268910355 0.140334275229335 1 1 - 6609495 6610026 6609677.818 6609360 6610604 - gene protein_coding_gene FALSE TRUE AT1G19130.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36638.1); similar to Os08g0455800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061963.1); contains InterPro domain Protein of unknown function DUF985; (InterPro:IPR009327) 0.273058768567000 2.35789661237168 0.0381873514242711 1 1.62587763107034 15.9016532638886 0.273058768567000 0.136455863088471
AT1G24360_at 9.71913993750198 9.74775948793748 9.35068364865163 9.3525859629848 9.41739201841538 9.11225442707243 9.75929044946815 9.74632919381519 9.79713105950654 9.58762255333642 9.74354178663699 10.1579173807611 9.3700520968829 9.86250920314345 9.99603080760163 9.48829542687806 9.074452738715 9.47254570145047 9.48095902749576 0.107369826017749 0.106547649709114 0.114867574950764 0.105881645482475 0.111596279785179 0.117517970548465 0.108335429094055 0.108390884262587 0.115708651665103 0.109275471343581 0.105059983728084 0.106316660226954 0.110968291486755 0.112584724472309 0.108739832286735 0.106078864923494 0.118756054237012 0.113530810615384 0.107553242126368 1 1|0 +|/ 8641944 8643115 8642714.857 8640571 8643467 + gene protein_coding_gene FALSE TRUE AT1G24360.1 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase Identical to 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase) [Arabidopsis Thaliana] (GB:P33207;GB:O04463;GB:Q9FPJ6); similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29370.1); similar to 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplast precursor (3-ketoacyl-acyl carrier protein reductase 1) (Beta-keto acyl-carrier protein reductase 1) (GB:Q93X62); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain 3-oxoacyl-(acyl-carrier-protein) reductase; (InterPro:IPR011284); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.205568411793589 -2.35771351019295 0.0381996511681193 1 1.62559856177901 19.1594655688333 -0.205568411793589 0.0530856686402875
AT1G65590_at 2.97429030343147 3.03953585416911 2.97822993015991 2.74623248041738 3.92555621737528 3.44187433545069 4.29526684796561 4.00475599482403 2.47263596676298 2.77016507919112 3.12491588597431 2.93066181887982 3.82131072899477 3.62138602391202 3.05054088266563 3.38462542885926 3.43523359168504 3.06729178151318 2.2905194016287 0.196724247939169 0.199475017303452 0.194312982584501 0.195832407576440 0.201537795584318 0.208376648311323 0.212644996866729 0.199775494965248 0.194639542170871 0.199020606293406 0.204178310129794 0.194303445059925 0.196556510820859 0.200868416829982 0.197467160522725 0.194430888694482 0.201742536639904 0.200719807531836 0.205070946083671 1 1 + 24389666 24389963 24389804.909 24389563 24394870 + gene protein_coding_gene FALSE TRUE AT1G65590.1 glycosyl hydrolase family 20 protein similar to glycosyl hydrolase family 20 protein [Arabidopsis thaliana] (TAIR:AT3G55260.1); similar to Os05g0415700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055557.1); similar to Os01g0891000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045052.1); similar to putative beta-N-acetylhexosaminidase [Oryza sativa (japonica cultivar-group)] (GB:AAT77374.1); contains InterPro domain Glycoside hydrolase, family 20; (InterPro:IPR001540) 0.243949971351415 2.35723024322353 0.0382321326797314 1 1.62486203225934 6.3335190373099 0.243949971351415 0.106174997408004
AT4G08430_at 1.06656549339809 1.09805976884899 1.54659907502888 1.30208455720660 1.33288903379139 1.20372953400550 1.17445342012416 1.1208945992206 0.927153750472368 1.08208068532901 1.22210916166193 1.13844407592298 1.52945277355295 0.960711509948639 0.943454332426866 1.56448721029636 1.19464915738333 1.14479380529796 1.10117995548524 0.214921419493155 0.211818919091534 0.211818919091534 0.215217761095893 0.219065625794189 0.213179672539572 0.219152631984358 0.212089912740219 0.218921573766535 0.217871172841344 0.217682436791876 0.21733167035367 0.217625224215260 0.215490519469669 0.217758124421629 0.211818919091534 0.216121503571359 0.219529893092647 0.217581478399899 4 4 - 5347547 5347868 5347677.091 5347393 5350433 - gene protein_coding_gene FALSE TRUE AT4G08430.1 Ulp1 protease family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28810.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28235.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) 0.203395092912986 2.35639992762099 0.0382880026356668 1 1.62359666768576 2.35519321040648 0.203395092912986 0.0490480888780949
AT2G47930_at 2.8365366650814 3.84979121117341 1.38333278176423 0.81364867452289 2.49797187646938 2.75024067932135 2.02778833922984 3.00683364272158 6.49838139362734 4.59884316147132 7.62993035203185 6.62271563280004 5.65842620637974 6.01381293433939 7.46072626971239 5.16913542074735 3.31395017665608 5.76077374702962 6.11330569291173 0.267151261066840 0.263155939982603 0.275822930554003 0.279618910856868 0.263447978302233 0.263155939982603 0.263155939982603 0.266750304235479 0.277821948691894 0.264322108815083 0.266235235568704 0.264291278756876 0.265025988479548 0.263441458550622 0.265380037774419 0.263155939982603 0.268186528192662 0.263155939982603 0.266087890805594 2 2 - 19624297 19624641 19624481.091 19624045 19624751 - gene protein_coding_gene FALSE TRUE AT2G47930.1 AGP26/ATAGP26 (ARABINOGALACTAN PROTEINS 26) Identical to Classical arabinogalactan protein 26 precursor (AGP26) [Arabidopsis Thaliana] (GB:Q94F57;GB:O82260); similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62760.1); similar to Os01g0937900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045338.1) -0.426049267536752 -2.35623504045122 0.0382991069086399 1 1.62334540028418 8.24103161301827 -0.426049267536752 0.266604962633019
AT1G22300_at 11.5242340743866 11.5052498767791 11.4784477432400 11.5187579782277 11.4990567652812 11.2234357212088 11.2862768559447 11.3713883136939 10.9541668569136 10.8023602149011 11.2953502874648 11.3354771625408 11.1775101669468 11.2606546831209 11.2722947266428 11.0669895468510 10.9853775628307 11.3187027125703 10.6854099216263 0.0646347019602199 0.0646347019602199 0.0685352713787309 0.0666701588000379 0.0646347019602199 0.0652438272330189 0.0660162150728048 0.0664370509908852 0.0748840004730685 0.0646347019602199 0.0652255919310258 0.0646347019602199 0.0671720419837653 0.0687489993052117 0.0682113049824022 0.0646347019602199 0.0699827083771119 0.0678966969227456 0.0656372623461495 1 1|0 -|/ 7879639 7880534 7880055.1 7878758 7881208 - gene protein_coding_gene FALSE TRUE AT1G22300.1|AT1G22300.2|AT1G22300.3 GRF10 (GENERAL REGULATORY FACTOR 10); protein phosphorylated amino acid binding 14-3-3 gene Identical to 14-3-3-like protein GF14 epsilon (General regulatory factor 10) (GRF10) [Arabidopsis Thaliana] (GB:P48347;GB:Q9LME5); similar to GRF11 (General regulatory factor 11) [Arabidopsis thaliana] (TAIR:AT1G34760.2); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308)|Identical to 14-3-3-like protein GF14 epsilon (General regulatory factor 10) (GRF10) [Arabidopsis Thaliana] (GB:P48347;GB:Q9LME5); similar to GRF11 (General regulatory factor 11), amino acid binding / protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G34760.1); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) 0.204101440047861 2.35612736230452 0.0383063601422665 1 1.62318131467200 22.4398677180626 0.204101440047861 0.0505118772713321
AT2G30330_at 4.75458905130661 4.48526155949914 5.10533791176039 5.38291781497178 5.04970241757198 5.22004032134051 5.6657831687963 5.21423019562202 4.07550985675701 3.96491690934185 3.99219377025503 4.24922294469345 4.284817474355 4.15467107008537 4.11506653447501 4.14451986407675 4.61436143969113 3.99738952737735 3.55317344259281 0.223462680325407 0.220760930219351 0.239890494761504 0.222970229477013 0.221800726263580 0.232589486855878 0.224981713284424 0.243510918413720 0.230948791444679 0.229588204707336 0.226077790939065 0.221230277867539 0.228833464193422 0.228663223751367 0.222093652984258 0.222678185452878 0.231186583256061 0.229191316634118 0.238205141729626 2 2 - 12936139 12936737 12936507.182 12935844 12936814 - gene protein_coding_gene FALSE TRUE AT2G30330.1 GCN5L1 family protein Identical to GCN5-like protein 1 (RT14 protein homolog) [Arabidopsis Thaliana] (GB:O22929); similar to Os11g0112300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065567.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91156.1); contains InterPro domain GCN5-like 1; (InterPro:IPR009395) 0.244515273917031 2.35534583853654 0.0383590437175182 1 1.62199044462899 9.13901467062027 0.244515273917031 0.107028816941430
AT2G33770_at 10.0161805951749 10.1902450611127 10.1668334588279 10.0516660328897 10.4013592689512 10.0942865390306 10.0524784710449 9.98287600878573 9.16054186699165 9.9729013493536 10.0099285397565 9.73801684598506 10.0860542145665 9.95700645184197 9.39598358758723 10.2022557568437 10.4237337364017 10.0398128620617 9.89101913831848 0.136377400471523 0.133590591424730 0.133590591424730 0.133590591424730 0.133590591424730 0.133590591424730 0.139247279842364 0.139259485769971 0.152976927152529 0.142891237771532 0.133590591424730 0.133590591424730 0.136216511784958 0.144528753823333 0.141804573510566 0.133653171610452 0.133590591424730 0.144808739268248 0.144224881213741 2 2 - 14285191 14285733 14285449.333 14284634 14290116 - gene protein_coding_gene FALSE TRUE AT2G33770.1 PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme 22), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G16920.1); similar to Os05g0557700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056291.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58719.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.212434752693972 2.35499929297481 0.0383824272771514 1 1.62146241757574 19.9477005716114 0.212434752693972 0.0653725619545722
AT2G24450_at 1.76464906224636 1.39866936001160 1.44010730260220 1.32379582179985 1.11703185136201 1.32374131940495 1.08870337659520 1.43436613251664 2.53712592428710 1.38721704762749 1.38117653557420 1.27008909351194 1.62957539025748 1.3535690907891 1.76341788532643 1.69617593515956 1.59850175193515 1.40831038294898 1.66330798191247 0.199571373218557 0.197363742824215 0.210288592027581 0.209186430124171 0.207336121899249 0.198686595517303 0.200559882897151 0.200733342773936 0.201322757289683 0.203364119088204 0.204652190371668 0.204949416939675 0.205868898288757 0.198016954990051 0.207549927460898 0.200620017301171 0.200679518767949 0.208248867099184 0.200731739588235 2 2 - 10400150 10400662 10400421 10399871 10401056 - gene protein_coding_gene FALSE TRUE AT2G24450.1 fasciclin-like arabinogalactan family protein Identical to Fasciclin-like arabinogalactan protein 3 precursor (FLA3) [Arabidopsis Thaliana] (GB:Q9ZQ23); similar to fasciclin-like arabinogalactan family protein [Arabidopsis thaliana] (TAIR:AT4G31370.1); similar to Os02g0461500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046792.1); similar to Beta-Ig-H3/fasciclin [Medicago truncatula] (GB:ABE80405.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.235188109402349 -2.35477786508474 0.0383973756070549 1 1.62112504103861 3.04895919138246 -0.235188109402349 0.096303178657151
AT2G47790_at 6.78795168723059 6.83969985226098 6.88006464997531 6.72844550889211 7.55556142338111 7.14314630255588 6.95971919096206 6.65572302253062 5.23651277004872 6.11514021558835 5.98940004704861 5.81905825223593 6.10594496179377 5.78959591007739 6.32619272627938 6.11125000274968 6.44387156717094 6.35003992334767 6.40306579225433 0.239719972250515 0.226712478523783 0.229565164721131 0.226727737472812 0.235491806150004 0.236117812914333 0.226712478523783 0.226712478523783 0.244628363092961 0.242592266577713 0.233288919177654 0.230973596880879 0.231940312612412 0.238979634877670 0.236117269192563 0.232193855180276 0.234004900615233 0.23511817844497 0.227319795628278 2 0|2 /|- 19578172 19578645 19578382.5 19578034 19580097 - gene protein_coding_gene FALSE TRUE AT2G47790.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97498.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.232355307081247 2.35453642633179 0.038413681272362 1 1.62075718430828 12.9613683379578 0.232355307081247 0.092897661498711
AT2G01660_at 1.77281390123432 1.96248646240629 2.07681733541732 1.84863330542196 2.25042693300439 2.08258548739723 3.00937183488388 2.38895676939135 2.42413042806401 2.44208521112316 3.33664386510228 2.93834879554808 2.79172014407666 3.03916732513287 2.96016417271457 3.17355748519558 3.20545032950853 3.03685908628788 2.10535969395627 0.235915638268441 0.237058988586188 0.233633585561472 0.231750397075691 0.230821334066214 0.238391485127404 0.230821334066214 0.239318115405915 0.239725450575292 0.231684399558868 0.230821334066214 0.236844589442888 0.234258306203061 0.235062196354443 0.230821334066214 0.237464593817727 0.239248204814887 0.238107271984361 0.236348781088105 2 2 - 291188 292183 291919 290602 292589 - gene protein_coding_gene FALSE TRUE AT2G01660.1|AT2G01660.2 33 kDa secretory protein-related similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G37660.2); similar to Os04g0537800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053427.1); similar to receptor-like protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25786.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902)|similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G37660.2); similar to Os04g0537800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053427.1); similar to receptor-like protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25786.1); similar to OSJNBa0091D06.12 [Oryza sativa (japonica cultivar-group)] (GB:CAD41623.3); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 0.258794489697962 2.35432301434643 0.0384280997222236 1 1.62043203720592 4.86606017605807 0.258794489697962 0.122506230901702
AT3G27750_at 4.19174201545259 4.93115498188877 4.05338145057642 3.91295190377816 3.96964348501545 4.52733777868933 5.51330782916769 5.4184846049207 3.47184682548717 4.47330855291797 3.80600509125715 4.37332574704565 4.36889146573301 3.96387254773978 4.83162093450315 4.60038740908688 4.13917699030417 4.24518799291257 4.03904495664411 0.207269585143596 0.202141175071547 0.205530433262623 0.204424837325016 0.202528357837752 0.206111874954337 0.201646824076947 0.202321517511609 0.215820128888501 0.206222646125217 0.204714542022491 0.198709923709346 0.201343989501017 0.206653299175613 0.204825060149036 0.201954985241891 0.222356492395901 0.203392796539512 0.202873162910827 3 3 + 10286131 10286684 10286285.273 10286045 10287111 + gene protein_coding_gene FALSE TRUE AT3G27750.1 similar to vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09320.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE85547.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.300759313018111 -2.35390177332123 0.0384565748147447 1 1.61979027094625 8.70764648985575 -0.300759313018111 0.162935019946688
AT3G60790_at 1.12299216179937 1.36062738417600 1.49250366821466 1.50204475889930 1.38452737372688 1.07196294531695 1.18829994156000 1.75752640209822 2.03662405004918 1.76161903523421 1.28377501401629 1.30823098199426 1.43051541412210 1.07229047252811 1.15672139155577 1.28871372606060 1.55325951144890 1.48100194466288 1.71957091945166 0.174019075529208 0.180008356307150 0.175732983966441 0.184116271071802 0.177460460346549 0.174019075529208 0.179914189722811 0.174019075529208 0.181850180441328 0.179268660211265 0.174065723815679 0.174019075529208 0.174019075529208 0.174019075529208 0.174292637346003 0.178456837343026 0.184088535390363 0.184766160665486 0.174780958694338 3 3 + 22477166 22477864 22477562.545 22475598 22477923 + gene protein_coding_gene FALSE TRUE AT3G60790.1 F-box protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67390.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91318.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.256029781866008 -2.3538052164614 0.0384631047533098 1 1.61964316940577 2.94060302545407 -0.256029781866008 0.119680383720228
AT1G14020_at 4.16177178467651 4.71015443943687 4.16711112582644 4.53550595393790 4.038257888661 4.6769359950732 4.43972196510939 4.33748582750343 3.8378079627775 3.94265255175653 5.02401688399785 5.28903365510697 4.77654505402788 4.79399750570799 4.46243396097635 4.48148525306724 4.53032098769437 3.87100972564426 4.22187893063807 0.178899782499724 0.185112562246564 0.187500763009513 0.185739350815938 0.185193810707271 0.186448644942786 0.186351833341975 0.189591368535016 0.183070637403428 0.184069236009053 0.184108978926761 0.180901670779015 0.178899782499724 0.191684474059195 0.181910192803527 0.178899782499724 0.188836857099082 0.188758891944910 0.182328692960037 1 1 + 4804292 4805067 4804725.727 4802717 4805372 + gene protein_coding_gene FALSE TRUE AT1G14020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G03280.1); similar to Os03g0169000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049097.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96844.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.297497399956792 2.35363811838414 0.0384744077842214 1 1.61938860401486 8.7105607191957 0.297497399956792 0.159998394555241
AT1G25570_at 6.1493984741686 6.35851941431799 5.80190781580206 5.68124615764858 6.24433849918236 5.94216689885992 6.05286424439668 6.30692154159734 6.18807588031404 6.1864552374025 6.48164955926908 6.54508003923762 5.93060378735601 6.40292103167306 5.80250226255414 6.04952461989587 5.65432263216524 6.22697871811686 6.46999090428187 0.209887473713669 0.215087067774683 0.231589509941615 0.217123315504015 0.210387600806562 0.227055602138476 0.209887473713669 0.219380942216917 0.214056233059328 0.228690787860232 0.213630691141996 0.210500226929939 0.223042156163508 0.215891947142229 0.214107261557643 0.209887473713669 0.222752575308877 0.213304635472026 0.222807675289026 1 1 - 8992171 8993996 8992969.4 8991813 8995469 - gene protein_coding_gene FALSE TRUE AT1G25570.1 leucine-rich repeat protein-related similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G28340.1); similar to Os07g0501800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059721.1); similar to Os01g0140400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041980.1); similar to leucine-rich repeat family protein [Lycopersicon esculentum] (GB:ABH07898.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.222160292564788 -2.35177465727588 0.0386006762212764 1 1.61655002774443 12.2762729667215 -0.222160292564788 0.0800821726592613
AT1G76220_at 1.09933640718817 1.02277015218928 1.07640818456178 1.32984671451201 1.06360828817706 0.811605807631176 1.17775313412250 1.16021048314913 1.39972879147814 1.52544839225973 1.08436772893601 0.959755935915887 1.00257258280315 1.12892173908112 1.11611209713009 0.782331254022224 1.03240841129965 1.33838215290249 1.37243305163683 0.193070309123663 0.200656821201267 0.198323949534945 0.197332059375772 0.197598065264625 0.197803284793643 0.199293465711427 0.196174679657122 0.193567568080596 0.201387295271484 0.193070309123663 0.193070309123663 0.198959474302577 0.194945926807927 0.197790140898508 0.198122644349796 0.215768316837532 0.193070309123663 0.197401662653218 1 1 - 28602429 28602945 28602777.364 28602424 28603194 - gene protein_coding_gene FALSE TRUE AT1G76220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35690.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17080.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10218.1); similar to Os08g0553500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062460.1); similar to Os11g0159900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065813.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) -0.210790276402666 -2.35079508286850 0.0386672131693798 1 1.61505808975506 2.33676401288450 -0.210790276402666 0.0633262974175377
AT3G46210_at 3.22411949108645 3.31219609492745 3.31346113390456 2.92342015268957 3.48704309125873 3.13363289111981 3.25656802958915 3.28090117164963 2.49636301980609 2.79700342483034 2.02275955478406 2.46710503792787 2.37590875956154 2.04112212975127 2.74075329011876 2.34788824059643 2.43214692225563 2.26270622885501 2.94299424018366 0.245555938574851 0.246839554635660 0.252282110057532 0.250842246319879 0.249108356861586 0.251378243633709 0.246821949596296 0.249893651348051 0.255887757195704 0.255235825475627 0.244696007113123 0.248517553921839 0.245744874920461 0.244696007113123 0.248777048991414 0.244696007113123 0.254701657761953 0.253621425192719 0.250844435305405 3 3|0 -|/ 16987991 16988966 16988371.444 16987725 16989901 - gene protein_coding_gene FALSE TRUE AT3G46210.1|AT3G46210.2|AT3G46210.3|AT3G46210.4|AT3G46210.5 3' exoribonuclease family domain 1-containing protein|3'-5'-exoribonuclease/ RNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07110.1); similar to Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3 exoribonuclease [Medicago truncatula] (GB:ABD33427.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247) -0.231605835347689 -2.35064610196538 0.0386773423236141 1 1.61483119872063 5.78229392307218 -0.231605835347689 0.0924475323489427
AT1G47830_at 7.57110009229957 7.99135727816112 8.13469663757774 7.8867331825314 8.06843532915508 7.89079627611963 8.10981082777429 7.96829563270941 7.13365282854786 7.29123852217119 7.9016632694224 8.01804358421243 7.39757890027512 7.53764273757719 7.74438697508156 7.66229782770841 7.28652098868427 7.35892287379487 7.27760197768771 0.172282394689001 0.169526074500307 0.174082507657483 0.176107336985648 0.169835056018609 0.172354889536929 0.169854350967481 0.170839984029487 0.186831125210317 0.175224882134392 0.176552346251823 0.171166967623210 0.174193385815545 0.179560562647718 0.175456230051899 0.167617074105080 0.173927403317071 0.179413327433086 0.174142699076394 1 1 - 17615791 17617084 17616636.273 17615538 17617356 - gene protein_coding_gene FALSE TRUE AT1G47830.1 clathrin coat assembly protein, putative similar to AP19 (associated protein 19), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT2G17380.1); similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT4G35410.2); similar to clathrin coat assembly protein [Gossypium barbadense] (GB:AAP40645.1); similar to Os12g0207300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066387.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.232121050201069 2.35014696992950 0.0387112968442105 1 1.61407107046184 15.3764264507394 0.232121050201069 0.0931420265530926
AT4G30010_at 11.0826108410612 11.1273534239523 11.1742319503543 11.0929099740959 11.1522502090836 10.970835711346 11.1451537791288 11.1231371634412 10.5981779398971 10.7314738799444 11.1834608250518 11.2570384951160 10.9458182850309 11.0220943337528 11.2576427071897 11.0975435500833 10.9627797186506 10.8101260544332 10.6234669388361 0.0710478129077293 0.0662624364694037 0.068801475431543 0.0685003403786556 0.0689151475402591 0.0671518809444636 0.066817188533673 0.0734778634521065 0.0788909328857616 0.0669866718039884 0.0662624364694037 0.0662624364694037 0.0672137358599904 0.0728908222601799 0.071839166868088 0.0674710221448524 0.0750106054913785 0.0743771575667269 0.0676539722105162 4 4 + 14672991 14673198 14673096.545 14672838 14674150 + gene protein_coding_gene FALSE TRUE AT4G30010.1 similar to fiber protein Fb15 [Gossypium barbadense] (GB:AAP34362.1) 0.197008284630844 2.34990366224087 0.0387278588297305 1 1.61370055210536 21.9676116727526 0.197008284630844 0.0354703444896256
AT1G71680_at 0.822814764849017 1.6575762799329 1.47261939688131 1.83764301072913 1.21847949148885 1.06851951753752 0.99208751292188 1.70967314806699 2.24107649439024 1.67216952348505 0.905957069853128 1.26898458820835 1.40566358739257 1.55103399400088 0.58201548822422 1.14969563995655 0.560623875577556 1.90315267632336 1.96863791555607 0.229207380956429 0.233260364455227 0.235464437182173 0.240923088744437 0.228348052775477 0.232512533025439 0.240051558985932 0.234972507832508 0.236307771127001 0.242745559305595 0.231504576205856 0.230722589707908 0.246033888637210 0.234903657129990 0.230425863067125 0.227994547348433 0.238230416345263 0.245596739752202 0.227578495643011 1 1|0 +|/ 26949422 26950183 26949767.889 26948249 26950850 + gene protein_coding_gene FALSE TRUE AT1G71680.1 amino acid permease similar to LHT2 (LYSINE HISTIDINE TRANSPORTER 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G24400.1); similar to Os08g0127100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060901.1); similar to histidine amino acid transporter [Oryza sativa (indica cultivar-group)] (GB:CAD89802.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.345479842575936 -2.34955515492183 0.0387515937189402 1 1.61316984877996 2.91068606167721 -0.345479842575936 0.202369369374176
AT3G16620_at 2.16717220872353 2.67724711680477 1.71338358804861 1.81931544675163 2.1620470410425 1.93877083565912 2.10278418306505 1.49984749455131 1.97807248534879 2.20295690674756 1.80492657513898 2.01023438844670 1.97960671131200 2.08785576264634 1.4545269893125 1.67917659346694 1.71902697367868 1.69740501462368 2.29534529024476 0.201203628657924 0.203661399353153 0.216682277893342 0.210488075567752 0.200616765256710 0.210978053594259 0.199170751211014 0.203346119647993 0.199914209935872 0.204532997440933 0.210774932856962 0.201700068954222 0.218754987883553 0.209515717331555 0.202772802337471 0.197223421051887 0.204245222429166 0.204700597646839 0.218375713843345 3 3 - 5658495 5659047 5658679.727 5658323 5661969 - gene protein_coding_gene FALSE TRUE AT3G16620.1 ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120); GTP binding / protein translocase component of TOC complex, plastid protein import machinery. similar to TOC159 (translocon outer membrane complex 159) [Arabidopsis thaliana] (TAIR:AT4G02510.1); similar to ATTOC132/TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132), transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G16640.1); similar to chloroplast Toc125 [Physcomitrella patens] (GB:AAS47583.1); similar to putative chloroplast outer envelope 86-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44144.1); similar to AAA ATPase; AIG1 [Medicago truncatula] (GB:ABE87459.1); contains InterPro domain Chloroplast protein import component Toc86/159; (InterPro:IPR005690); contains InterPro domain AIG1; (InterPro:IPR006703) -0.279040103806424 -2.34952887769136 0.0387533838853584 1 1.61312983490300 3.99151420776011 -0.279040103806424 0.143205519336410
AT4G13195_at 2.53286850512735 3.41024317351895 2.8112784834536 3.17061890903874 2.70689190409022 2.36104853299612 2.18891755370423 2.58645946834449 2.53400151510617 2.95129305370127 2.98653562878328 4.01845379164639 3.09028225633568 3.18841284282236 3.59463514736225 3.33781878936207 3.03232777257939 3.4327512072959 2.79926292895239 0.214690908869346 0.219221022895929 0.218822611695045 0.224047899171846 0.212925979759951 0.215712414164457 0.216801130309046 0.218590738598030 0.225949745966762 0.212940578493639 0.214592530703048 0.217143848443424 0.221528739493504 0.217231988890625 0.221142694113765 0.214723527368179 0.219611758496405 0.223703605597594 0.214519048454001 4 4 - 7662680 7662939 7662838.818 7662367 7663173 - gene protein_coding_gene FALSE TRUE AT4G13195.1 CLE44 (CLAVATA3/ESR-RELATED 44) Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770). similar to CLE41 (CLAVATA3/ESR-RELATED 41), receptor binding [Arabidopsis thaliana] (TAIR:AT3G24770.1) 0.328235147912194 2.34939771466972 0.0387623207137097 1 1.61293010700544 5.76937648900589 0.328235147912194 0.187711194990695
AT2G41520_at 3.98927192471445 3.67485152640225 3.1769849989361 3.30791830479858 4.05894129548924 3.54302244652988 4.30361645983242 4.29917851916783 4.09949119191565 3.80095726588436 4.12089736188499 4.20073948270819 3.38789604223665 3.74133337091972 3.75660881942252 4.04280248843167 4.32623723426081 4.1435560247736 3.82240159073778 0.272586946288972 0.258464325620019 0.258409669530301 0.264888635286508 0.258409669530301 0.2652812452293 0.263150963185272 0.2663602168083 0.270110821638698 0.263903885792614 0.265537149618876 0.258409669530301 0.271007636037231 0.259918915266575 0.268219415571495 0.265845683587472 0.269281322866589 0.261257254376512 0.27014959902622 2 2 + 17328335 17329455 17328895 17324563 17330095 + gene protein_coding_gene FALSE TRUE AT2G41520.1|AT2G41520.2 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12430.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01341.1); similar to Os01g0273500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042715.1); similar to Os05g0374600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055374.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)|similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12430.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01341.1); similar to Os01g0273500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042715.1); similar to Os05g0374600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055374.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.243810337928476 -2.34892412375798 0.0387946055711372 1 1.61220897235630 7.7305359524467 -0.243810337928476 0.106985812704660
AT1G19690_at 4.6964544634847 4.52108997483061 4.42303126341847 4.04827079690951 4.99749662002903 4.96662746742467 4.68346008143787 4.14926369877269 5.18011113966236 4.489343873145 5.42917173603427 5.45302705734656 4.89764595086075 5.11340003983947 5.58275166258641 4.90085734980549 5.04120868488024 4.84979655941683 4.57688132556579 0.214850445849035 0.204991350584768 0.215609574907796 0.205155908935757 0.214400983311508 0.216281540435644 0.212960169133376 0.21066329298306 0.215223465266314 0.213543079944606 0.206050395898751 0.205382515999623 0.213606152805793 0.204991350584768 0.211378353976487 0.208438691794078 0.206303315090407 0.208224930924218 0.210970899586431 1 1|0 -|/ 6808003 6808694 6808343.375 6807706 6809560 - gene protein_coding_gene FALSE TRUE AT1G19690.1 catalytic/ coenzyme binding similar to hypothetical protein, 5' partial [Musa acuminata] (GB:ABF70040.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.252996541476246 2.34871491377405 0.0388088757771556 1 1.61189042116107 9.51434237556543 0.252996541476246 0.117054152979252
AT3G01490_at 7.30608750440182 7.17489986885394 6.20428970673007 6.0880779005885 8.25919683606472 7.94717001405506 6.66699843577998 5.98952169502317 6.83044900468011 6.9082380339156 7.59632241037948 7.5478413799943 8.15288189502382 7.57942192108157 7.44962696026785 7.58167835825882 6.7706760457543 7.45047087665888 8.22245611443754 0.171511358962098 0.174201350039238 0.180549475563774 0.176403027851643 0.178541404677182 0.185816637540359 0.175684455656520 0.176152435507271 0.182478650261613 0.174523909811113 0.172974989526057 0.178766216864161 0.17718685902847 0.180532681883996 0.176973761390582 0.171511358962098 0.186763798504109 0.171511358962098 0.172888584009829 3 3|0 -|/ 191119 191862 191472.444 190879 193544 - gene protein_coding_gene FALSE TRUE AT3G01490.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G50000.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06450.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.268020334130578 2.34807537815192 0.0388525299974314 1 1.61091668465349 14.3727782611564 0.268020334130578 0.13259317471361
AT1G78100_at 7.689613862531 7.80599229837461 8.10346518576611 8.18136050499318 8.30639887705829 8.18388830951382 8.77353571638282 8.3829403900344 8.14249281464495 8.13118730831155 8.57273980854722 8.22528567277053 8.703541449075 8.53080417583725 8.53043110305277 8.76119374620876 8.83020795083597 8.28064176980508 8.17323040299144 0.164701288788834 0.161947632427417 0.171676189877501 0.167671649560559 0.16538620221027 0.163637169272371 0.158987517442666 0.162072284009767 0.173927669703778 0.160867488232675 0.156826292006905 0.158753101301509 0.157754945176776 0.162389748579198 0.173047171197768 0.163274721426343 0.159220100040242 0.159832365184894 0.155477240213688 1 1 + 29393218 29393747 29393501.364 29392688 29394005 + gene protein_coding_gene FALSE TRUE AT1G78100.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G22220.1); similar to P0432B10.4 [Oryza sativa (japonica cultivar-group)] (GB:BAB90386.1); similar to Os05g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055899.1); similar to Os01g0812200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044594.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.218071593351367 2.34786561432902 0.0388668586679060 1 1.61059731977432 16.5300623354981 0.218071593351367 0.0748719296452442
AT3G53770_at 1.60355694071008 1.37425700676806 1.85148960698589 1.40834422459302 1.05973728003954 1.42858047959026 1.35503163851097 1.66016276989975 1.99834444029208 1.97166429299580 1.35564360794233 1.60799090754161 1.48173321704659 1.48318804466811 1.44917860856679 1.48933540007302 1.26041885091345 1.48697156894072 1.73381079168456 0.176568949032671 0.177317489361209 0.176568949032671 0.181488603226507 0.176963845401125 0.180756817757918 0.185712311862904 0.178544481135291 0.183692389978677 0.176580218161121 0.176568949032671 0.176568949032671 0.176568949032671 0.178852203723651 0.183827944272255 0.178769324444548 0.182698116886622 0.189601042893852 0.180199674167127 3 3 + 19934307 19934745 19934562 19934306 19934804 + gene protein_coding_gene FALSE TRUE AT3G53770.1 late embryogenesis abundant protein-related / LEA protein-related contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) -0.255339920224635 -2.34764890654801 0.0388816670424701 1 1.61026739042867 3.14418534373839 -0.255339920224635 0.119659085319987
AT3G07670_at 9.0324297849809 8.90505516757652 8.75537920635885 8.67450976744155 8.80181307251534 8.66668736566286 9.03089248498011 8.89763997399167 8.70790133068681 8.89683790318873 8.37241763288404 8.75241004044495 8.48444279322281 9.01646411334964 8.9532910323278 8.9246111251238 8.61347055001286 8.29175086368384 8.89390213128861 0.127329631773106 0.125774850922407 0.129284325698671 0.130382479619511 0.125072614682661 0.137455986567564 0.124788185034378 0.132026606530438 0.132042837545162 0.127213245940812 0.135902038016875 0.128062263330822 0.126861003065047 0.127438685124069 0.125848034623806 0.123349610887093 0.126293775900594 0.134183366785385 0.130249259299575 3 0|3 /|+ 2453923 2454584 2454258.778 2451614 2454866 + gene protein_coding_gene FALSE TRUE AT3G07670.1 SET domain-containing protein similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G14260.2); similar to Os02g0725200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047982.1); similar to N-methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55476.1); contains InterPro domain Rubisco methyltransferase; (InterPro:IPR011192); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.199340093030575 -2.34709433842337 0.038919587430621 1 1.60942311719543 17.6000447149064 -0.199340093030575 0.0419561557467793
AT3G01120_at 11.4437336031524 11.6355803101989 11.5953675978720 11.5345845402250 11.7310917048786 11.4445725281817 12.6362999352650 12.5397314675202 12.0091698329652 12.4533554722714 12.3351169219964 12.2915676602166 12.0729942842566 12.3162584852900 12.1689709144387 12.1763871808055 12.0872402193604 12.5110401590935 12.0707812804097 0.073587686330538 0.0680011950145979 0.0692064185094623 0.0691782029836826 0.0700809770654286 0.0720216245330368 0.0724810712183943 0.0735596048424021 0.0802824845869437 0.0685997224944264 0.0712225609165266 0.0685301435225092 0.0681376505369242 0.0691866392205588 0.0711216429175931 0.0681272030064758 0.0772684729865566 0.0683864434216909 0.0687171980408852 3 3|0 -|/ 39251 40252 39721 38766 41939 - gene protein_coding_gene FALSE TRUE AT3G01120.1 MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome. Identical to Cystathionine gamma-synthase, chloroplast precursor (EC 2.5.1.48) (CGS) (O-succinylhomoserine (thiol)-lyase) (CGS1) [Arabidopsis Thaliana] (GB:P55217;GB:P92944;GB:P93038;GB:Q42550); similar to cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative [Arabidopsis thaliana] (TAIR:AT1G33320.1); similar to similar to the metB gene product of Escherichia coli; cloned by functional complementation of a metB mutant strain of Escherichia coli LE392 (GB:AAC49574.1); similar to cystathionine gamma-synthase isoform 1 [Solanum tuberosum] (GB:AAF74981.1); similar to cystathionine gamma synthase [Fragaria vesca] (GB:CAA04772.2); contains InterPro domain Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; (InterPro:IPR000277) -0.210127059972351 -2.34659470422074 0.0389537821868073 1 1.60866251914197 24.0314781309439 -0.210127059972351 0.0628544560706947
AT3G53890_at 10.4128287383526 10.5092386431610 10.1473553753365 10.1453004880391 10.2387828472680 10.0720163105309 10.4500956090506 10.6602170461750 10.4070554556850 10.3255955342824 10.3881211171109 10.6267895476214 10.2372847859372 10.1916003828734 10.9068508687021 10.0215342119123 9.82454086089889 9.9810899903048 10.2282292856861 0.100422342087435 0.0949931903965765 0.104891666360241 0.0990482279110447 0.101673645188172 0.102233164240914 0.100315543976529 0.096664010094001 0.102093011111943 0.0956340650018137 0.0986294145109412 0.09602000681709 0.0978800953011494 0.094938857129498 0.100763035883239 0.0931725531405778 0.100816489761247 0.0922900556199598 0.0964498208652454 3 3|0 -|/ 19966560 19967001 19966773.2 19966322 19967339 - gene protein_coding_gene FALSE TRUE AT3G53890.1|AT3G53890.2 40S ribosomal protein S21 (RPS21B) Identical to 40S ribosomal protein S21-1 (RPS21B) [Arabidopsis Thaliana] (GB:Q9M337); similar to 40S ribosomal protein S21 (RPS21C) [Arabidopsis thaliana] (TAIR:AT5G27700.1); similar to Ribosomal protein S21e [Medicago truncatula] (GB:ABD28456.1); contains InterPro domain Ribosomal protein S21e; (InterPro:IPR001931) -0.202649104219431 -2.34614378418546 0.0389846679293018 1 1.60797611490749 20.6257393301832 -0.202649104219431 0.04933156493648
AT3G13674_at 1.85417671689363 1.85589624488106 1.41417624347949 1.51739441359895 1.63426262735339 1.51712314134230 1.91737522315918 1.48945730706063 2.06633006383135 2.01614116655072 1.66016535192060 1.91982382140459 1.32083933527929 1.43944365890152 2.45946171313706 1.56556142691886 1.22260399458804 1.93639194355992 1.53795081857758 0.195846747364222 0.194006100355620 0.190779883983583 0.189193321203378 0.198533020626365 0.192590879713109 0.194969052432169 0.203430895921128 0.195242151330614 0.197925409718031 0.187557400816303 0.188283652605254 0.198006674257028 0.190100584036999 0.197537269339573 0.193475834946216 0.189487991400822 0.189000658273311 0.194770510619424 3 3 - 4475485 4475862 4475711.1 4474784 4475915 - gene protein_coding_gene FALSE TRUE AT3G13674.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55205.1); similar to Os06g0332500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057545.1); similar to Os02g0273900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046534.1) -0.220712438580621 -2.34609322496976 0.0389881324573828 1 1.60789915424382 3.43198795073789 -0.220712438580621 0.0788286977718597
AT2G22440_at 1.92871460317344 2.35901860066831 2.08344006060763 1.9320193455396 1.58746508877038 1.34154596718893 2.01019515757638 1.78365803887703 2.37517477681206 1.67863657449270 1.44251420612177 1.63601135928345 1.60838171094719 2.11347621938147 1.6465370639742 1.575781412566 1.46496813292277 1.56729573187654 1.40255312453471 0.194313104021130 0.195078293036179 0.195865001215599 0.203331664255311 0.194690957751519 0.195428309746487 0.194313104021130 0.198929409112499 0.204324280889421 0.201487413414858 0.198837203670723 0.194471146941086 0.198518476013945 0.197708819389058 0.212280879058469 0.194313104021130 0.204515091140919 0.199399512121631 0.200141004413866 2 2 + 9536593 9536968 9536843.273 9535990 9536997 + gene protein_coding_gene FALSE TRUE AT2G22440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04580.1); similar to hypothetical protein 27.t00122 [Brassica oleracea] (GB:ABD65056.1) -0.235598206763072 -2.34571286846167 0.039014205625003 1 1.60732019358203 3.60358655192388 -0.235598206763072 0.097876915727013
AT2G16010_at 1.23657036968390 1.48973773857819 1.09608283128056 1.48646645287158 1.04770997651104 1.42336836456568 1.52743906501044 1.11290699300292 1.80631471601350 1.95060831962885 1.36354940502307 1.05051994195356 1.31360998435459 1.46728239779576 1.11809118914581 1.23080587167761 1.55576343087596 1.79397261269323 1.66031037920752 0.154852797729863 0.153062925844273 0.151668424928807 0.156015569355545 0.154088276836960 0.158419027083168 0.171871556653238 0.156550685598518 0.154792129371031 0.153644678420556 0.154732524400004 0.153643323151423 0.160966487813922 0.155837089275307 0.156168347894311 0.156907877572911 0.152761193235049 0.151668424928807 0.154962411158132 2 2|0 +|/ 6972708 6973024 6972836.2 6972692 6973081 + gene protein_coding_gene FALSE TRUE AT2G16010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.261150876344160 -2.34568975960533 0.0390157902643196 1 1.60728501915459 2.88625713684133 -0.261150876344160 0.125920209183747
AT4G19540_at 4.16432262331595 4.33484612677804 4.43802639677679 3.89166639571159 4.94126504175147 4.32663587921908 4.78375607185588 4.63030419982348 3.51450677335909 4.4225719944499 5.33826790788328 4.79941701168325 5.16980642616481 4.97803693198827 4.32645556196793 4.81470705440461 4.85012037065519 4.51094251261776 4.67157265024084 0.253663163685215 0.248588050263385 0.250699586247311 0.252395210673917 0.253562693912188 0.261407497388845 0.250146721796563 0.253438568998323 0.273931626691677 0.248588050263385 0.254770635735262 0.253536615235911 0.254426827103227 0.249520195477683 0.252146541575318 0.248588050263385 0.267943000713707 0.256534388298546 0.248588050263385 4 4|0 +|/ 10658183 10659072 10658663.2 10657393 10659243 + gene protein_coding_gene FALSE TRUE AT4G19540.1 similar to HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101), ATP binding [Arabidopsis thaliana] (TAIR:AT3G24430.1); similar to putative nucleotide-binding protein [Oryza sativa] (GB:AAL31687.1); contains domain NUCLEOTIDE-BINDING PROTEIN NBP35(YEAST)-RELATED (PTHR23264); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain MRP-RELATED NUCLEOTIDE-BINDING PROTEIN (PTHR23264:SF4) 0.283338294537712 2.34567250819874 0.0390169732824314 1 1.60725876052044 8.96452935599766 0.283338294537712 0.147746933179169
AT4G38780_at 1.68418054939481 1.71130871570148 1.62167335927032 1.48171946874104 1.73995240579549 1.78852902477599 1.47842043344215 1.33396734765158 1.44096950465145 1.60008877667482 1.74872164400914 1.84166402982314 2.15575602812455 2.29393545426218 1.84327425988396 1.85988201080468 1.26044105403923 1.81752935210435 1.65362794703507 0.211487117028114 0.209159454377794 0.210959688907467 0.217785726986669 0.209196065638062 0.212183054207258 0.212284640931828 0.210389251802220 0.218638751278680 0.214352742021927 0.209159454377794 0.209159454377794 0.209159454377794 0.215919045120518 0.214819994702619 0.214900331868970 0.224028954529091 0.218013020393955 0.213357660052268 4 4|0 -|/ 18101437 18102127 18101748.4 18101290 18111023 - gene protein_coding_gene FALSE TRUE AT4G38780.1 splicing factor, putative similar to SUS2 (ABNORMAL SUSPENSOR 2) [Arabidopsis thaliana] (TAIR:AT1G80070.1); similar to putative splicing factor Prp8 [Oryza sativa (japonica cultivar-group)] (GB:BAD67606.1); similar to PREDICTED: similar to Pre-mRNA processing splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) isoform 15 [Canis familiaris] (GB:XP_868480.1); similar to PREDICTED: similar to splicing factor Prp8 [Gallus gallus] (GB:XP_415805.2); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain PRO8NT; (InterPro:IPR012591); contains InterPro domain PRO, C-terminal; (InterPro:IPR012984); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain PROCN; (InterPro:IPR012592) 0.196877186387916 2.34551588858771 0.0390277150870756 1 1.60702036965241 3.3137418573892 0.196877186387916 0.0361139048725644
AT3G09540_at 5.16709614167957 5.51093404287564 3.907338824827 3.84236550463005 4.82871608012526 4.01338628701014 6.71703145058133 6.3239669418045 4.28545078759372 5.42255007540234 5.95008182551124 7.14050945709349 6.00854033081025 6.7732484513346 6.3704540299214 5.7043626860216 4.92412218031032 5.85685408891076 5.04994659454327 0.226338604160433 0.220128301997215 0.229791133505293 0.227847151740415 0.220628237306244 0.229206431835165 0.220781813460306 0.222469271922152 0.220958538410979 0.222927559206159 0.218297328349216 0.218474852902654 0.218967252427688 0.220375584767111 0.220570696574725 0.218297328349216 0.233724804295113 0.227538180916462 0.22934347156604 3 3 - 2929134 2929725 2929405.364 2928817 2931234 - gene protein_coding_gene FALSE TRUE AT3G09540.1 pectate lyase family protein similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G55140.1); similar to Os01g0546800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043284.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD73403.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.305049829013858 -2.34421635696450 0.0391169543318479 1 1.60504250961962 10.5440231344012 -0.305049829013858 0.167935121740158
AT2G29440_at 1.62175419212787 1.74248007857415 1.30808453559489 1.69708957374131 1.47248031820506 1.92169287001324 1.71317643228909 1.68295157311696 1.91913852008036 2.67741809827211 1.90900761684481 1.85666941805574 1.76604741038598 1.70902312827659 2.21482487428137 1.40668100131246 2.08305374845945 2.22104087175740 2.26980517264016 0.195981157348748 0.196055036428224 0.195699598752393 0.201311908169866 0.199192535680750 0.201789272018108 0.194938744208567 0.20324527300332 0.202777131869117 0.201348314981925 0.198597484919507 0.194938744208567 0.199940160126341 0.197285841852004 0.201641534801332 0.195665445371337 0.204970535770401 0.201701945591148 0.197392137491745 2 2 - 12627292 12628068 12627772.364 12627151 12628225 - gene protein_coding_gene FALSE TRUE AT2G29440.1 ATGSTU6 (GLUTATHIONE S-TRANSFERASE 24); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU5 (Arabidopsis thaliana Glutathione S-transferase (class tau) 5), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29450.1); similar to glutathione S-transferase [Euphorbia esula] (GB:AAF64450.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.241623749815438 -2.3441924153816 0.0391186002589825 1 1.60500607368403 3.73725408287579 -0.241623749815438 0.105066433088916
AT3G58350_at 2.28493707967575 2.17485909747798 1.95425218179490 1.67510713571437 1.48005223886943 1.62063739253874 2.08853073104545 2.20002177335282 2.21024966701329 2.41751306005284 2.34986131294506 2.60032469233450 2.45685898963771 2.39072285064992 2.74608173520101 2.46271524725029 1.95872174646091 2.59768998624447 2.44547979713190 0.226306024176983 0.217381058155156 0.223681561629412 0.225132967597278 0.219632199555270 0.219287491969064 0.215379081764765 0.229999127825355 0.231240217310725 0.220448061008546 0.227416855263251 0.217438061108828 0.212634225052162 0.214960879365326 0.218882523785223 0.211934529041274 0.218164034283737 0.22237590585127 0.220046930464302 3 3 - 21602600 21603315 21602889.636 21602429 21603939 - gene protein_coding_gene FALSE TRUE AT3G58350.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58360.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.208475185567083 -2.34378239055745 0.0391467988993183 1 1.60438208483336 4.33635949288693 -0.208475185567083 0.0605032261520368
AT4G10470_at 4.37650378110368 4.66259875339961 3.47757342565765 3.48659743451076 4.99014945794691 3.22823385028497 5.5942016306197 4.8654610919920 3.83107812775874 4.33696571729245 4.29783784882697 4.69333821593079 4.15866477048348 4.41897931721873 4.42305505255864 4.58687304660195 3.15515317659801 3.77252655589120 4.22362183394355 0.222923636416423 0.221039572337302 0.230437867668355 0.225406375813332 0.229160359059154 0.241637403084553 0.22567539841571 0.230194216122579 0.233381432866056 0.222870164318274 0.222449442021289 0.223454596295324 0.222178888858689 0.246257267199974 0.225332834088096 0.226384736032755 0.235631280901927 0.229811217374337 0.225282098516353 4 4 + 6476828 6477395 6477045.273 6476010 6477875 + gene protein_coding_gene FALSE TRUE AT4G10470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33050.1) -0.510652250248267 -2.3432611175364 0.0391826768132955 1 1.60358883567037 8.49459429036206 -0.510652250248267 0.333656444406595
AT3G47630_at 4.52762111717703 3.8638319983413 4.28685658511263 4.17069137878074 4.72429173939902 4.96094917668213 4.02532875014311 3.95319000256855 3.19769429775837 3.93371517584552 3.41549313173878 4.16189075292332 3.53302055776491 3.69227542004103 4.05366027637452 3.84667397877769 4.16563877954489 3.71792269240064 4.1131958311619 0.213183260128739 0.208819819935268 0.21295913415699 0.228588260410186 0.211889356486862 0.209142303955342 0.210160614477193 0.223107037724478 0.224621231173559 0.211827913985095 0.218185932056333 0.214192945387339 0.224897286838899 0.222863131299065 0.216702235181785 0.213290195257553 0.219522769704496 0.214204838423308 0.216565667762288 3 3 - 17574239 17575130 17574739.091 17574031 17576481 - gene protein_coding_gene FALSE TRUE AT3G47630.1|AT3G47630.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94181.1); contains domain FAMILY NOT NAMED (PTHR13619); contains domain gb def: Hypothetical protein F1P2.180 (At3g47630) (PTHR13619:SF1) 0.259162216688294 2.34257170735978 0.0392301760563227 1 1.60253979328629 8.09985695200106 0.259162216688294 0.124228793316774
AT4G25360_at 7.24027362706001 7.19869054279209 7.18035093055691 7.3121178336322 7.38434283044419 7.74023786094066 6.80651563207639 6.93601631464667 6.69748420018322 6.12763751776318 6.48891829783879 6.67945066217362 6.3947309146848 6.67674143330895 6.66237392289657 6.33354170889036 6.70418007419076 6.53471126829657 6.64507981533646 0.163775604811178 0.167533114765559 0.165577450981025 0.165601419747654 0.175376752292376 0.168795776471453 0.166757793642897 0.166225156137418 0.174449785475043 0.173122549232139 0.174434142724114 0.170412384539762 0.168937758956249 0.169590048959181 0.170690783577247 0.164139787356982 0.171599399746795 0.166897935083897 0.170308160269816 4 4 + 12971960 12972333 12972144.364 12969587 12972676 + gene protein_coding_gene FALSE TRUE AT4G25360.1|AT4G25360.2 similar to YLS7 (yellow-leaf-specific gene 7) [Arabidopsis thaliana] (TAIR:AT5G51640.1); similar to unknown [Gymnadenia conopsea] (GB:ABD66519.1); similar to Os01g0914800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045183.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.214076096136903 2.34199653378149 0.0392698472103995 1 1.60166464043277 13.7495173030416 0.214076096136903 0.0697655811703432
AT1G69730_at 8.72604537804174 8.77966328778738 8.80946990843804 8.82446283025592 7.94440912152594 7.97391925416266 8.32995014059599 8.80459791487382 9.04256744934035 8.51361581960045 8.31201254922038 8.53753537165686 8.48295183476413 8.72198864031759 8.22303363278017 8.9176225610783 8.32940578539099 8.63503354596226 8.52728963819737 0.0975912617875894 0.0963667081382148 0.0910857869403616 0.0917593467337644 0.0981466691934886 0.104349712675032 0.0988360264199627 0.0949687029331395 0.0994490868101298 0.0918514022292839 0.100826322061983 0.0966542196594436 0.0932280062770901 0.101438029222455 0.103651989581398 0.0984504722377888 0.0950258370850095 0.0983837907791269 0.0910857869403616 1 1 - 26232398 26232922 26232625.364 26232295 26235002 - gene protein_coding_gene FALSE TRUE AT1G69730.1 protein kinase family protein Identical to Putative wall-associated receptor kinase-like 9 precursor (EC 2.7.11.-) (WAKL9) [Arabidopsis Thaliana] (GB:Q9C9L5); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G19390.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31110.1); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79680.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) -0.223270940314406 -2.34179501655269 0.0392837555353265 1 1.60135803594889 17.1312842090564 -0.223270940314406 0.0828606667046926
AT1G02560_at 12.1896998508014 12.0941950485314 12.6548849151826 12.5028954263074 12.5128677610608 12.4944119797898 12.3331952079739 12.2478746380235 11.7536203223053 11.7602670728701 11.5564548136215 11.1751896815708 11.8534081641806 11.7987064427273 11.4707765171504 11.7674232923268 12.0090585117504 11.659548810666 11.2692089807177 0.0810699156747728 0.0805585368398568 0.0874080190386627 0.0828699283043393 0.0814250258359551 0.089389829630902 0.0805585368398568 0.0816136132768307 0.0908001445807354 0.083460457001295 0.0805585368398568 0.0819268158245254 0.0805585368398568 0.0814535760566705 0.0805585368398568 0.0805585368398568 0.0847354399986315 0.0830728591972442 0.0844435844058064 1 1 + 538470 539762 539072.636 537860 540109 + gene protein_coding_gene FALSE TRUE AT1G02560.1 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to CLPP3 (Clp protease proteolytic subunit 3), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G66670.1); similar to Clp protease 2 proteolytic subunit [Solanum lycopersicum] (GB:CAC67407.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.195989577435413 2.34173370270799 0.0392879882425253 1 1.60126474950266 24.006596222399 0.195989577435413 0.0345425898159346
AT2G47990_at 4.41656344031825 4.08100418652185 3.62704831117519 3.97693755751112 3.30065541839509 3.74475305047801 3.86825681318210 4.13539056689917 3.81254675582249 4.01899747186303 3.77574718936521 3.97086731417928 3.84203889921622 3.78089604061662 3.89501377485766 3.80713506993886 3.90854562563329 4.02999598041524 3.95454884186497 0.202993125854007 0.203494225101548 0.199119429178055 0.200697455463824 0.197158724918704 0.209379953638353 0.19851018381245 0.206652684186429 0.214951296463184 0.199245586011061 0.199465775921057 0.202375127945453 0.202095068619868 0.205073459115727 0.19609845220826 0.199180575933534 0.210418536104519 0.20679862402686 0.200554618802725 2 2 - 19644104 19644561 19644354.182 19643937 19645748 - gene protein_coding_gene FALSE TRUE AT2G47990.1 SWA1 (SLOW WALKER1); nucleotide binding Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. similar to VIP3 (VERNALIZATION INDEPENDENCE 3), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G29830.1); similar to U3 small nucleolar RNA-associated protein 15 homolog (GB:Q7ZXZ2); similar to Os07g0224900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059211.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.257686435206428 -2.34160255114334 0.0392970435709898 1 1.60106521001815 7.79631500637408 -0.257686435206428 0.122808549948408
AT1G05470_at 1.37017701254892 0.935374904017054 0.631164073903444 0.982041416680496 1.04703603056363 1.11963155892715 1.74293696204044 1.27314976781172 1.80941935946687 1.32126270602026 1.49724809303650 1.30497249996703 1.48105386915550 1.65914373264493 1.70295400488642 1.45331629453631 0.97518775637456 1.38381494387555 1.57896465723035 0.207618588036883 0.200234166956129 0.203538322146116 0.202651989892554 0.20546337249985 0.204026709307770 0.202036815853928 0.205236194016962 0.205489049355540 0.210976202776534 0.208744654219926 0.205445233776198 0.203880406457442 0.205066328014188 0.207804292327194 0.205167538674156 0.203016812523475 0.215940577307620 0.207529549175489 1 1|0 -|/ 1608621 1609353 1608956.778 1608557 1611166 - gene protein_coding_gene FALSE TRUE AT1G05470.1 endonuclease/exonuclease/phosphatase family protein Identical to Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 (EC 3.1.3.56) (Cotyledon vascular pattern 2 protein) (CVP2) [Arabidopsis Thaliana] (GB:Q9LR47); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G32010.1); similar to putative inositol polyphosphate 5-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAO37964.1); similar to Os07g0175900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059017.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.261556116591041 -2.34031651340737 0.0393859447844703 1 1.59910873206470 2.63873578591932 -0.261556116591041 0.126949238044227
AT3G24050_at 5.8105662396621 6.0306984122005 5.43914919263948 5.5462464401612 6.58205402256224 5.50639017566522 6.21530943588764 6.44291630861912 6.08202948226532 5.70667517147144 7.55034694981744 7.388073086054 7.15587202184084 7.97532750159766 6.74096718982604 7.25535510249403 6.69958306442869 5.66908001141805 6.29301525746478 0.20127721845974 0.192135133659127 0.199634045674374 0.194832716018875 0.189933109486104 0.200428941322734 0.190688260877322 0.188760695037137 0.210416828453131 0.206309066723182 0.198327590821646 0.20085470342574 0.196259484527758 0.205120359490547 0.197180644077269 0.191593309238267 0.20650987818409 0.189630783397652 0.192865601295692 3 3 + 8686894 8687424 8687208.727 8685880 8687684 + gene protein_coding_gene FALSE TRUE AT3G24050.1 GATA transcription factor 1 (GATA-1) Identical to GATA transcription factor 1 (AtGATA-1) (GATA1) [Arabidopsis Thaliana] (GB:Q8LAU9;GB:O49740); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT3G51080.1); similar to AG-motif binding protein-2 [Nicotiana tabacum] (GB:BAC98492.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.335336502099389 2.34013415391807 0.0393985666712849 1 1.59883132710836 12.4874490715922 0.335336502099389 0.194929436546819
AT2G30080_at 4.52803360583599 4.99190435425035 4.92842671026151 5.07351677785228 4.90229302015038 4.79148863981339 6.00086596948537 5.99512325571159 4.71460274515211 5.13830552189884 4.85811874780772 4.40910300373439 4.94903523093457 5.1684921557406 4.54120927254836 5.27467361696207 4.96938961418783 4.62384634001661 4.68358343249127 0.255691813314636 0.245022387133438 0.25441221869416 0.251452417989712 0.246057533302025 0.257386961750302 0.244447004058195 0.266821354389332 0.248635877801473 0.249103073723941 0.244447004058195 0.244447004058195 0.252075199941937 0.254511473567002 0.254599405961645 0.244447004058195 0.262151229697760 0.247794069031999 0.257744255640948 2 2|0 -|/ 12845825 12846541 12846083 12845807 12847189 - gene protein_coding_gene FALSE TRUE AT2G30080.1 ZIP6 (ZINC TRANSPORTER 6 PRECURSOR); cation transporter member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. Identical to Zinc transporter 6, chloroplast precursor (ZRT/IRT-like protein 6) (ZIP6) [Arabidopsis Thaliana] (GB:O64738); similar to ZIP5 (ZINC TRANSPORTER 5 PRECURSOR), cation transporter [Arabidopsis thaliana] (TAIR:AT1G05300.1); similar to root iron transporter protein [Pisum sativum] (GB:AAC17441.1); similar to Os05g0164800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054742.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) -0.225657122370326 -2.33966881059048 0.0394307928251434 1 1.59812347308419 9.99882190713124 -0.225657122370326 0.0862739182827629
AT4G01650_at 4.84628188441804 4.77600965464577 5.28899517523966 4.87796405770649 5.09675973587631 5.15616267613139 5.3224971511557 5.16759902052115 4.60222570284821 4.57053653963707 5.17985164916877 4.86279710051276 5.48578791004411 5.09491503852722 4.71613291562557 5.10774951719005 5.25364482631039 4.66123954951372 4.87852671834337 0.256685346904038 0.254945433041997 0.260225194859536 0.265270073057436 0.261236292759959 0.265237338701363 0.261900189210966 0.261280711022687 0.292123486032295 0.26548899214337 0.265151514703742 0.259382916125081 0.254945433041997 0.266407221142093 0.277060734685125 0.254945433041997 0.263461762298324 0.258500329288730 0.260455267275166 4 4|0 -|/ 704664 705511 705139.556 704407 706965 - gene protein_coding_gene FALSE TRUE AT4G01650.1|AT4G01650.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08720.1); similar to COG2867: Oligoketide cyclase/lipid transport protein [Nostoc punctiforme PCC 73102] (GB:ZP_00109164.1); similar to Os01g0971700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045536.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) 0.219187654985994 2.33875404186157 0.0394942171243765 1 1.59673208533995 9.93104756961404 0.219187654985994 0.0776641309631406
AT3G25790_at 2.18620115416425 2.78253793444205 2.04035765047940 3.19452535645694 1.89815850635183 2.0754506988201 1.82411356616562 2.71372199956431 3.01236060080083 2.75119452995797 1.57166369288313 1.8607575864747 2.20519207183034 2.15024815348732 1.71992923520491 1.91222816221485 2.12565326276183 2.71368728881337 2.70530615089667 0.204546416619886 0.215213053935156 0.222737879791828 0.210006512398908 0.205864412850999 0.202832041194536 0.202832041194536 0.209351688214493 0.211725483339124 0.203600579535599 0.207677692271227 0.205389849996774 0.213638658918340 0.203200574728598 0.212020007005354 0.205072827540605 0.209757813510944 0.202832041194536 0.209071230600196 3 3|0 +|/ 9415380 9416125 9415834.8 9414364 9416240 + gene protein_coding_gene FALSE TRUE AT3G25790.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G13300.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os02g0325600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046702.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.432527219700006 -2.33866434279736 0.039500441602198 1 1.59659565829340 4.76707020443588 -0.432527219700006 0.274200532306321
AT2G45540_at 7.55500078654282 7.73670414942318 7.30781776692666 6.94488867492682 7.19287787972951 6.69799776061794 7.25301566626197 6.15582990142805 6.54300229597246 6.70111753318477 7.84648499430175 8.19201585836977 7.57753006385652 7.38849082786144 7.79078671071557 7.65751721932752 7.55868369858629 7.22442402545085 7.1137807660995 0.237208905755965 0.229541713125413 0.229541713125413 0.236783364849824 0.237111437929066 0.242423889901226 0.229541713125413 0.234091090651411 0.263441717657187 0.246217256585196 0.235067919893667 0.229541713125413 0.242784836739178 0.236689523023191 0.236251070072486 0.229541713125413 0.247939790086037 0.241969325954808 0.243922221859940 2 2|0 -|/ 18765206 18765756 18765510.5 18764563 18779303 - gene protein_coding_gene FALSE TRUE AT2G45540.1 WD-40 repeat family protein / beige-related similar to beige/BEACH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G60920.1); similar to Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins (ISS) [Ostreococcus tauri] (GB:CAL53426.1); similar to Os02g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047656.1); similar to OSJNBb0012E24.4 [Oryza sativa (japonica cultivar-group)] (GB:CAE01863.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Beige/BEACH; (InterPro:IPR000409); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985) 0.364641352179680 2.33778864656774 0.039561258570587 1 1.59526384709885 14.3257458431793 0.364641352179680 0.21981734004837
AT1G05010_at 11.1232934370495 11.3868429891639 11.3315634935907 11.4698541466404 10.3687699838083 10.0176640518147 10.2261357782355 10.2013493499570 10.8565974890683 9.97811808082074 10.8751187733874 11.5145134978197 10.3902364990848 10.5592806056182 11.2246183569709 11.2478757066951 9.55123099092142 10.7795925203955 10.3330086424648 0.103057597207454 0.101681407700748 0.105132158419787 0.102539991445409 0.102001678661643 0.108472116080926 0.102450258981668 0.102435873186872 0.107989986158429 0.105837986082837 0.100615921180296 0.101389002687231 0.106374438910963 0.102480967112209 0.100421452047611 0.101213646809613 0.113051796864300 0.106537708476171 0.104387203940822 1 1 - 1431495 1432073 1431809.909 1431189 1432857 - gene protein_coding_gene FALSE TRUE AT1G05010.1 EFE (ethylene forming enzyme) Encodes 1-aminocyclopropane-1-carboxylate oxidase Identical to 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4) (ACC oxidase) (Ethylene-forming enzyme) (EFE) (ACO) [Arabidopsis Thaliana] (GB:Q06588;GB:Q94K94;GB:Q9S9K8); similar to ACO2 (ACC OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT1G62380.1); similar to 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G12010.1); similar to putative 1-aminocyclopropane-1-carboxylate oxidase [Brassica oleracea] (GB:AAO13735.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.220562247552869 2.33726851562041 0.039597424446578 1 1.59447286249488 21.3442090402723 0.220562247552869 0.0797690800869075
AT2G36840_at 2.74463519191566 2.95946339381161 2.62923818930223 2.75606285074015 3.51268066428110 3.10736513621910 2.387571117598 2.12211438140113 2.80298373147775 2.52175630821483 2.82375416062360 2.9841453337422 2.75467587715021 2.71891181306618 2.50791928048799 2.67349713136103 2.4909683398989 2.65608613986870 2.73228067997625 0.197096777244483 0.200572103247227 0.203231353979393 0.193232116273313 0.195177645226280 0.197818330132018 0.198410017989618 0.203926771074977 0.202066428883576 0.199161697426251 0.203716753334309 0.197850442399925 0.193990590142277 0.201831501149532 0.198962684383605 0.195314859387568 0.196167869883907 0.193232116273313 0.206910509732667 2 2|0 -|/ 15458963 15459702 15459373.8 15458652 15460793 - gene protein_coding_gene FALSE TRUE AT2G36840.1 ACT domain-containing protein similar to ACT domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39570.1); similar to Os09g0570900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063990.1); similar to hypothetical protein MtrDRAFT_AC146757g1v2 [Medicago truncatula] (GB:ABE90622.1); similar to Os05g0113000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054453.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.231730937627974 2.33659292709700 0.0396444473802665 1 1.59344553582325 5.47085053203252 0.231730937627974 0.0943082197826302
ATCG00340_at 13.5575589857180 13.7272300328459 14.1003383085716 13.7108924247472 13.7806127041233 13.4062094823189 13.5108607234849 13.473615450928 14.8290054572714 14.7423838606255 15.1324793997215 15.1546183576076 15.0922821653747 15.0255486784607 14.9257615674117 14.9237523352533 14.6267018952489 14.8485509024607 14.4641210810084 0.0575024588939549 0.0559702982852116 0.0576103952842032 0.0574873047426427 0.0562497482439664 0.0658685301544623 0.0580367899014656 0.059252643775593 0.059198811624142 0.0569372189484153 0.0566927486694636 0.0567613884452291 0.0566407657582471 0.0583900965605174 0.0574466302332952 0.0566535380981254 0.0598093811526806 0.0571590643144244 0.0588806174927632 C C - 37381 37894 37601.364 37375 39579 - gene protein_coding_gene FALSE TRUE ATCG00340.1 Encodes the D1 subunit of photosystem I and II reaction centers. Identical to Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) (psaB) [Arabidopsis Thaliana] (GB:P56767); similar to photosystem I P700 apoprotein A2 [Ranunculus macranthus] (GB:AAZ04114.1); similar to photosystem I P700 apoprotein A2 [Nandina domestica] (GB:YP_740649.1); similar to photosystem I P700 apoprotein A2 [Spinacia oleracea] (GB:NP_054932.1); contains InterPro domain Photosystem I psaB; (InterPro:IPR006244); contains InterPro domain Photosystem I psaA and psaB; (InterPro:IPR001280) 0.234952689043338 2.33656365716054 0.0396464858733923 1 1.59340102855400 28.4807724535893 0.234952689043338 0.0982031993349706
AT3G08940_at 13.7137560509289 13.8123401876246 13.5483632799165 13.5206179001446 13.6853406281665 13.5606264091061 14.0441092867864 14.1801897290546 14.6456171732489 14.5183328697110 14.6496831786596 14.6467192212933 14.5105819353728 14.584950561912 14.5464331479622 14.5340995436996 13.9873035516502 14.6210761733142 14.4668846205659 0.0494503088014354 0.0503476007484144 0.0510275161123236 0.0502821755176343 0.0487808733316082 0.0532182846709673 0.0498297866737188 0.0508584647419323 0.0514577885955953 0.0480685151931625 0.048290574795660 0.0480685151931625 0.0487925396934852 0.0486096320056014 0.0503818054628336 0.0482357468285514 0.058243237792375 0.0480685151931625 0.0492944027884757 3 3|0 +|/ 2717994 2718633 2718386.2 2717680 2718874 + gene protein_coding_gene FALSE TRUE AT3G08940.1|AT3G08940.2 LHCB4.2 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding|LHCB4.2 (LIGHT HARVESTING COMPLEX PSII) Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of phototystem II similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|Identical to Chlorophyll a-b binding protein CP29.2, chloroplast precursor (LHCII protein 4.2) (LHCB4.2) (LHCB4.2) [Arabidopsis Thaliana] (GB:Q9XF88); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.196183699770409 -2.33541046114357 0.0397268804726318 1 1.59164761835906 28.2850266683368 -0.196183699770409 0.0365305898881916
AT1G28080_at 0.753242316032574 0.943137885397225 0.759796922564243 0.892360151610103 0.926895118886339 0.900667250520346 0.852801694695323 0.798829869677192 1.69014204517426 1.4234685374099 1.19291868410289 1.05195958076909 1.09404017511677 1.09686472094599 0.841385806513848 1.23144916930948 0.991824778349529 0.859703670835549 1.30883169535416 0.191216226151245 0.189267600901350 0.188716474438572 0.193039926003606 0.191292827228563 0.188761325638214 0.195949101611106 0.189666813604506 0.194025734751333 0.195587084740213 0.197906627340294 0.193924479546562 0.194895500866745 0.197334724492801 0.192340606765925 0.189095869240529 0.187748975740985 0.197187367318835 0.192037465555447 1 1 + 9790057 9790529 9790281.091 9789813 9791533 + gene protein_coding_gene FALSE TRUE AT1G28080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13250.1); similar to hypothetical protein LOC_Os12g29500 [Oryza sativa (japonica cultivar-group)] (GB:ABA98244.1); similar to OSJNBb0039F02.5 [Oryza sativa (japonica cultivar-group)] (GB:CAD40774.1); contains domain RING FINGER PROTEIN (PTHR10825:SF1); contains domain RING FINGER PROTEIN (PTHR10825) -0.198101091645933 -2.3352611646754 0.0397373001351493 1 1.59142063281418 2.11304927578409 -0.198101091645933 0.0414010257158099
AT1G49410_at 6.84914039101569 7.0590500503055 6.48424999682123 6.73295372905726 6.40758383048986 6.29607994834153 7.43039852756782 7.24898570248885 5.74552801689003 5.8862201133464 5.95343815091296 6.7209430778543 5.53453375170406 5.87533321371421 6.49792996936872 5.9773473401001 6.27553396727937 5.5673038406674 5.7903273483231 0.156030028538999 0.156030028538999 0.162107907439954 0.163717598362423 0.159385813697163 0.169863722034885 0.166823759867746 0.168107331509308 0.159249670360389 0.162203620465857 0.161820825527475 0.168446544617484 0.163096293336298 0.168293055941798 0.158220288591326 0.160283294216939 0.176121588843093 0.171024979647224 0.162360506635395 1 1 - 18290406 18290546 18290480.818 18289409 18290570 - gene protein_coding_gene FALSE TRUE AT1G49410.1 TOM6 (TRANSLOCASE OF THE OUTER MITOCHONDRIAL MEMBRANE 6) Identical to Mitochondrial import receptor subunit TOM6 homolog (Translocase of outer membrane 6 kDa subunit homolog) (TOM6) [Arabidopsis Thaliana] (GB:Q9XIA7;GB:P83432) -0.211869935285016 -2.33525541289671 0.0397377016147406 1 1.59141188807111 12.7423822254126 -0.211869935285016 0.0673045475374088
AT1G69340_at 8.96180903641742 8.96398169822745 8.96090780462901 8.80461132030296 9.31905498540003 9.06530881212 8.86201242044665 8.39151898949658 8.21557270406442 8.2248235059589 8.49061510004247 8.29702365703505 8.48326465894142 8.22502909624083 8.61902024682824 8.50150596079476 8.47532487746953 8.50558531315895 8.2367487301758 0.147758752189971 0.144178611059224 0.150287770844125 0.14662012624035 0.140888544475404 0.141154565650131 0.140927984573006 0.149194672703181 0.169599114952436 0.145456485317568 0.140778500672534 0.139980311145663 0.144813630923457 0.141199648995089 0.145516933444914 0.139110138431103 0.147354589588362 0.144527846633117 0.141527582334386 1 1|0 +|/ 26072152 26073121 26072647 26069387 26073484 + gene protein_coding_gene FALSE TRUE AT1G69340.1 appr-1-p processing enzyme family protein similar to appr-1-p processing enzyme family protein [Arabidopsis thaliana] (TAIR:AT2G40600.1); similar to appr-1-p processing enzyme family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53991.1); similar to Os10g0444400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064706.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Appr-1-p processing; (InterPro:IPR002589) 0.233298164106759 2.33520647665152 0.0397411175695848 1 1.59133748785505 17.2538436803201 0.233298164106759 0.096381427526622
AT1G32170_at 3.10155774230803 3.29950499160684 3.5498500631371 3.74120083312765 4.19539540645036 3.66165669986645 2.88993050286149 2.98558097046433 4.86363193172591 3.06745404844953 4.65435294087351 3.11858645962650 3.61506797326035 4.3605028876318 3.05002853337421 3.63767497955986 3.24898173275826 3.9884667661078 3.90534571709847 0.241014743084422 0.230640073943462 0.244601839934737 0.232423509543033 0.232260665350860 0.240200700225522 0.234352536466477 0.230640073943462 0.233916602795437 0.238804214933646 0.232778383102632 0.232625288767939 0.245402026145853 0.231538311713608 0.23713745968629 0.230640073943462 0.244060115724495 0.236183447408759 0.239683871077049 1 1 + 11576379 11577586 11577349.273 11575300 11577907 + gene protein_coding_gene FALSE TRUE AT1G32170.1 XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4); hydrolase, acting on glycosyl bonds xyloglucan endotransglycosylase-related protein (XTR4) Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 30 precursor (EC 2.4.1.207) (At-XTH30) (XTH-30) (XTH30) [Arabidopsis Thaliana] (GB:Q38908;GB:Q8LDA9;GB:Q9FVR2); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT4G18990.1); similar to xyloglucan endotransglycosylase-related protein (GB:AAB18365.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.240806375279811 2.33478807003027 0.0397703356988552 1 1.59070138008228 7.25542715951462 0.240806375279811 0.105240038989540
AT3G17780_at 7.72430212676623 7.51781815787289 6.84718569755522 6.74238366851316 7.13424706761947 7.17174669608116 7.12998575109034 6.94695527642132 6.49576069796585 6.38856569901162 6.78936736984303 6.82008125407294 5.76681014478215 6.62739217266216 7.0242240083941 5.66931192919741 5.66058868619004 6.10155541212945 6.18659665694264 0.200075443320682 0.196825190092905 0.193566700903986 0.208337268374519 0.211460248744425 0.208769894373568 0.205355853852363 0.200212586858570 0.208969306332194 0.200279000899868 0.196526735998591 0.198421030459377 0.203737181056491 0.204724131709983 0.204808607713954 0.195424814735688 0.216894019272112 0.199359773995959 0.196842372362614 3 3|0 +|/ 6087038 6088076 6087493.778 6086919 6088377 + gene protein_coding_gene FALSE TRUE AT3G17780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48440.1); similar to Os02g0734900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048043.1); similar to Os03g0240700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049510.1); similar to Erwinia induced protein 2 [Solanum tuberosum] (GB:AAO32066.1) -0.202716262371619 -2.33444288381306 0.0397944563444709 1 1.59017661254153 13.4840234169728 -0.202716262371619 0.0514893527165389
AT2G14330_at 0.944449356620047 1.08092284601195 0.993262516770105 1.39122282950617 0.920163836174007 1.44894813780567 0.511092128861901 0.196970186069197 0.711937162063561 1.20001403025273 1.17092817831185 0.910426785295984 1.45950438807112 0.88928824025405 0.727859661464681 1.15246538041243 0.64355661020493 1.29080637761500 1.1184063487055 0.313791570350672 0.296488450657882 0.296488450657882 0.296488450657882 0.296488450657882 0.313407612752828 0.296488450657882 0.296488450657882 0.297525716550433 0.296488450657882 0.299653543034596 0.296488450657882 0.304305322948355 0.296488450657882 0.296488450657882 0.296488450657882 0.296488450657882 0.296488450657882 0.296488450657882 2 0|2 /|+ 6082314 6082335 6082323.75 6081244 6082476 + gene protein_coding_gene FALSE TRUE AT2G14330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45350.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.262762986518186 2.33354953911903 0.0398569464611308 1 1.58881860457642 1.95624079624956 0.262762986518186 0.128955669554957
AT1G06250_at 0.760207341714839 0.968797539313322 1.13403690251066 0.674797615629701 0.506363887886941 0.622992093868671 0.884167583798096 1.04079528840414 1.25558576919913 1.35384306877437 1.45658865235993 1.04841369153424 1.24399599577715 0.850646419487521 0.9493203962578 1.04406017563864 0.606796695309034 1.01049054494273 1.31704742260918 0.230105428267629 0.230105428267629 0.230105428267629 0.233903464867559 0.230105428267629 0.230105428267629 0.235021278695337 0.237304719139884 0.230407746210003 0.232720958296442 0.234936350930189 0.230105428267629 0.236304119987873 0.233594266187760 0.2303740310931 0.231589437413943 0.246894239079032 0.235572516878934 0.231883529043610 1 1 - 1913367 1913913 1913712.727 1913255 1914894 - gene protein_coding_gene FALSE TRUE AT1G06250.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G18550.1); similar to Ipomoea nil Pn47p (GB:AAB07724.1); similar to Os05g0574000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056386.1); similar to Os05g0574100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056387.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.230740331057226 -2.33240558994378 0.0399371050891763 1 1.58707984265132 1.9915770274446 -0.230740331057226 0.0936008139159893
AT1G52290_at 8.30605211547587 8.03895589209197 8.05594194703963 7.70676419875829 7.00127077486192 6.92124018777858 7.7070537209353 7.26812229463426 8.11186692564667 7.33389538007673 8.04198988088334 7.77380427736579 7.76706573708519 8.12072353700445 6.93638894016922 7.33164624380239 7.0611602009949 7.77739606667754 7.59155808803311 0.137752561363744 0.139170096790768 0.137328499716213 0.146608676662169 0.14261131288475 0.148074154188918 0.138471799425387 0.150540014487613 0.151820383163457 0.140912008191895 0.144327695102441 0.140386127566550 0.142701434053673 0.140181538991695 0.149552074462296 0.141327647863618 0.151459658521075 0.142716294374525 0.140421855670521 1 1|0 -|/ 19473958 19474611 19474262.111 19473702 19476118 - gene protein_coding_gene FALSE TRUE AT1G52290.1 protein kinase family protein similar to ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G24550.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.243288333047865 -2.33185067644942 0.0399760450179768 1 1.58623647483744 15.2658644706553 -0.243288333047865 0.108395118032508
AT2G41040_at 6.11707921229906 6.27355719519884 7.0923980746393 6.74883214558024 7.14747272520267 6.5606031322721 8.12044272740984 8.13148193714062 6.8154671327344 6.6901818757182 7.29349676084848 6.7580541609785 7.2223985737347 7.60306387563165 6.7715297104286 7.79924261085706 7.39782988363264 7.49479163444342 6.02406715061399 0.215194897465237 0.197703952542098 0.19985083914785 0.202306604145093 0.196481060308368 0.208258682461198 0.209963894760877 0.207410299540104 0.204805128574983 0.211271930381088 0.205850836027089 0.209700303960474 0.196481060308368 0.196481060308368 0.204940846564827 0.196481060308368 0.212932176832322 0.20294939325252 0.209434963451291 2 2|0 +|/ 17128896 17129699 17129365.667 17128454 17130282 + gene protein_coding_gene FALSE TRUE AT2G41040.1 methyltransferase-related similar to methyltransferase-related [Arabidopsis thaliana] (TAIR:AT1G78140.1); similar to SAM-dependent methyltransferases (ISS) [Ostreococcus tauri] (GB:CAL54388.1); similar to Os08g0411200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061786.1); similar to Os06g0646000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058196.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.254665883187666 2.33175652636705 0.0399826554500371 1 1.58609338904726 13.9252115375553 0.254665883187666 0.120774388658135
AT2G04305_at 5.12372499864941 5.03560956714258 4.91914931406029 5.260393077786 5.77604223813941 5.64744480052629 5.36640020723427 4.69599308260366 4.14009092141843 3.74487546453461 3.91075539677242 3.65957136776084 4.31595510412263 4.19053205549832 3.99790660452811 3.56594210524108 4.31965287850927 3.93446180445873 3.51257763602425 0.216122229536835 0.209957201832517 0.237039553774033 0.211774024227025 0.209638735328120 0.224206912658862 0.216084845113622 0.213523126875384 0.241978236392155 0.206657769788811 0.209826735156919 0.206657769788811 0.210257857513924 0.222288557734348 0.211180991261849 0.207361547150898 0.209257850044966 0.210642351379009 0.211962014943230 2 2 - 1502842 1503184 1503043.727 1501405 1503782 - gene protein_coding_gene FALSE TRUE AT2G04305.1 magnesium transporter CorA-like protein-related similar to hypothetical protein MtrDRAFT_AC123898g3v1 [Medicago truncatula] (GB:ABE84684.1); contains domain MAGNESIUM AND COBALT TRANSPORT PROTEIN AND TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 8 (PTHR21535) 0.266495608836423 2.33162272396391 0.0399920517547456 1 1.58589004375791 9.121108913403 0.266495608836423 0.132947734743299
AT3G01690_at 10.6519231243517 10.5173357542798 10.2298546947904 10.1271975866257 10.6964096213103 10.4668661013299 10.7330345691608 10.6237000948392 10.8879030192836 11.1659249708463 11.2105257098495 11.0483466096351 11.2865867672951 11.0201663864369 10.8317792103034 11.2176860803656 10.8941524071993 11.1362815471843 11.6530235075573 0.069220857097188 0.0655852537842914 0.0660376291682394 0.0659128567603006 0.0649353274912649 0.0699067617510072 0.0652626471939753 0.0664811936557971 0.0677876186224455 0.0652941211942708 0.0668396695829257 0.0652923846512407 0.0636105028443215 0.0669156032655473 0.0651851207638395 0.0637290235877391 0.0690810301973343 0.0670228262273124 0.0641792249207636 3 3|0 +|/ 257806 258361 258140.8 256544 258554 + gene protein_coding_gene FALSE TRUE AT3G01690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14390.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.203171480377949 -2.33157884763590 0.0399951334447778 1 1.58582336367796 21.6639440711757 -0.203171480377949 0.0528586389708114
AT2G33670_at 0.286592091360333 0.0936213283587287 0.504586110221759 0.389052047208531 0.641222210709345 0.302991790274743 0.644988000783901 0.505318693727142 -0.042086279145365 0.243000726727167 0.183754906013803 0.337518530881427 0.625573543629643 0.360728661085129 0.729269593384215 0.516652186916532 0.841097981667555 0.391778597485004 0.227822927092546 0.196929491206196 0.203313042041742 0.206641957434461 0.209811531686198 0.208104201465102 0.197090106511817 0.209212452278333 0.214347698929173 0.210705338823900 0.202728797650282 0.204903580566383 0.203320900717451 0.196929491206196 0.20734115991633 0.197860134416534 0.199597110847648 0.201529122273025 0.206974288640541 0.201913000940676 2 0|2 /|+ 14254027 14254874 14254511.8 14252106 14255007 + gene protein_coding_gene FALSE TRUE AT2G33670.1 MLO5 (MILDEW RESISTANCE LOCUS O 5); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO5 belongs to the clade III, with AtMLO7, AtMLO8, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledon vascular system, and in stigma, anther and pollen grains; it was not expressed in rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 5 (AtMlo5) (MLO5) [Arabidopsis Thaliana] (GB:O22815); similar to ATMLO9/MLO9 (MILDEW RESISTANCE LOCUS O 9), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G42560.1); similar to MLO-like protein 9 (AtMlo9) (GB:Q94KB4); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.216108651477099 2.33073856498034 0.0400541957026898 1 1.58454642659583 0.741651138259408 0.216108651477099 0.0743315949833773
AT3G20280_at 2.77204660663602 2.75510003655493 2.46904699973096 2.32939190106975 2.44296810423657 2.59399529244428 2.57169547265342 2.87355265580256 2.34387735469269 2.41591316320715 2.45422631299638 2.13390933301094 2.43146946693107 2.02012343241482 2.38011406960773 1.79169291826355 1.97674202052115 2.44966338831781 2.25545460528908 0.193426228951186 0.195408596340767 0.196081760592038 0.195289319994740 0.193586803917347 0.203225179752712 0.196402471484733 0.197755756852745 0.201399318883176 0.20347130389182 0.199283174992443 0.204294686964447 0.203780942816776 0.203035663118448 0.200491828955077 0.200103849467208 0.193354089903853 0.202992584096141 0.201990222787838 3 3 + 7073764 7074280 7073990.909 7071199 7074647 + gene protein_coding_gene FALSE TRUE AT3G20280.1|AT3G20280.2 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT1G50620.1); similar to bactericidal permeability-increasing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD12870.1); similar to Os06g0309000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057478.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965)|similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT1G50620.1); similar to bactericidal permeability-increasing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD12870.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.208960270923196 -2.33068755481138 0.0400577838471337 1 1.58446891281257 4.87255346305152 -0.208960270923196 0.0632816453544605
AT1G72990_at 3.09508652097148 3.13887556909873 2.80371443540408 2.18700201513739 3.3635672265121 3.09826535805645 3.34126563638933 2.70697666483447 2.65795680292429 3.08009865225134 2.72508657911223 2.84601002859412 2.13036754149651 2.46086490215716 2.27257923137961 2.54169237815141 2.90377113250246 2.84735248554636 3.18012125991266 0.242163580068530 0.24707447479825 0.240361962733008 0.239972890279454 0.239848065719668 0.242108710324556 0.239848065719668 0.241617586241807 0.243316880718407 0.243572370742548 0.243252020890856 0.240524222143598 0.242941153245473 0.239848065719668 0.24959695446264 0.242454039270646 0.24678369488669 0.239924007320763 0.241983142694373 1 1|0 -|/ 27461171 27462392 27461569.4 27460927 27466053 - gene protein_coding_gene FALSE TRUE AT1G72990.1|AT1G72990.2 glycosyl hydrolase family 35 protein|beta-galactosidase similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2); similar to Os05g0539400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056172.1); similar to putative beta-galactosidase [Oryza sativa (japonica cultivar-group)] (GB:AAV59405.1); similar to Galactose-binding like [Medicago truncatula] (GB:ABD28499.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.294586937937305 -2.33048443005756 0.040072075079585 1 1.58416025393876 5.74868973158229 -0.294586937937305 0.160013277567787
AT2G44790_at 2.15214035926191 2.33279895878584 2.75083397740736 2.49765532588932 1.98964656641663 1.85862881087466 1.68650166576832 1.93059046343042 2.07421229000493 1.97381858426759 2.21114734946685 1.99580983032027 2.44717810450618 2.24023508467197 2.06577578036778 2.12493088388403 2.21759745450096 2.35214110673065 2.03157435427634 0.179978128008431 0.178098001690079 0.186632593076191 0.181787137560204 0.188270334904912 0.182841692260905 0.183062372083406 0.176976828606030 0.189744331701743 0.180123015953833 0.180336020821814 0.186504145200117 0.177763835898625 0.176649392936888 0.186608644130350 0.185710137212742 0.194358312992056 0.176649392936888 0.186940873539704 2 2 - 18469285 18470267 18469751 18468981 18470384 - gene protein_coding_gene FALSE TRUE AT2G44790.1 UCC2 (UCLACYANIN 2); copper ion binding Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. Identical to Uclacyanin-2 precursor (Uclacyanin-II) (Blue copper-binding protein II) (BCB II) (Phytocyanin 2) [Arabidopsis Thaliana] (GB:O80517;GB:O03987;GB:O82082;GB:Q39252;GB:Q42071;GB:Q8LDL7); similar to UCC3 (UCLACYANIN 3), copper ion binding [Arabidopsis thaliana] (TAIR:AT3G60280.1); similar to putative uclacyanin 3 [Oryza sativa (japonica cultivar-group)] (GB:BAD24983.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.214500090729255 2.32987455955092 0.0401150133093705 1 1.58323356598341 4.26654302872383 0.214500090729255 0.0720792831469026
AT1G29440_at 4.03253610469377 5.17572083930466 5.7859034837716 5.84927288470678 7.45290876405733 6.92674467624519 6.90479774363991 6.96187690949336 8.0648143903564 7.5236155240712 8.55782604551197 8.7298415400778 7.98339115072789 7.77867930433887 8.6357980553106 8.11966908866807 7.56983592829231 7.8490675053796 8.90693091944125 0.217576303207207 0.212697093003661 0.216754126082403 0.205459402407852 0.206482525007956 0.208654151158199 0.216517369888123 0.206199822829569 0.226646929515049 0.205193822839454 0.213116307890314 0.207383644255081 0.206472242174548 0.223297315543107 0.208841916924268 0.206986062439833 0.212247109384009 0.208368606329798 0.210551579160401 1 1 - 10304557 10304775 10304695.091 10304557 10304955 - gene protein_coding_gene FALSE TRUE AT1G29440.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G29430.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.361433926122201 2.32909275491901 0.0401701216918919 1 1.58204572090219 14.2952871033614 0.361433926122201 0.218281805590737
AT1G49540_at 2.68231703059710 2.90331747323513 2.53857161961274 2.94950974080945 2.66214779250234 2.60453286200211 3.19403743391955 2.98835962343069 2.28027257464536 2.51095853307085 2.40811219345310 2.65085633122430 2.21357713254940 1.97011210092698 2.14213137133008 2.58441427060997 2.56222730752055 2.27870539019641 2.86210473862541 0.261381184485183 0.254777521633371 0.252055703936090 0.244388497779259 0.247446158774378 0.249614180020785 0.247073308245322 0.251870025257055 0.253321905712168 0.245434361552476 0.249470563677680 0.255670021937078 0.257569552538746 0.253960069591968 0.259719725141507 0.245637080791847 0.25612194856764 0.254352955326045 0.244388497779259 1 1 - 18337477 18338120 18337772.818 18337308 18341188 - gene protein_coding_gene FALSE TRUE AT1G49540.1 nucleotide binding similar to WD-40 repeat family protein / katanin p80 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G11160.1); similar to Os08g0493900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062125.1); similar to PREDICTED: similar to elongator protein 2 [Gallus gallus] (GB:XP_419067.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.226581161559073 -2.32894649918449 0.0401804391879923 1 1.58182351706489 5.26653867751708 -0.226581161559073 0.0888048984547965
AT2G39450_at 9.7142223774022 10.1326982608113 9.63911557930104 9.71575598100437 10.452986301334 10.0955630528474 10.7157027256030 10.7489417839140 9.93272328771462 10.2820549958929 10.4101700687042 10.0278098198248 10.1905566787649 10.3455309375160 9.65800846530852 10.2206416896166 9.8537221933408 9.8007320441979 10.3144807661130 0.0997903922209114 0.0985561373480116 0.103998765869001 0.103092000945299 0.100096152542168 0.105923352834395 0.100678860925535 0.100804157422997 0.113567169609917 0.098806777461066 0.0993897546465895 0.0985561373480116 0.100001756033604 0.0991178003585846 0.101534200438622 0.100085002827086 0.110140437497523 0.105257055859728 0.0989809116349918 2 2|0 -|/ 16478829 16479411 16479146 16478710 16480896 - gene protein_coding_gene FALSE TRUE AT2G39450.1 cation efflux family protein similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G79520.1); similar to Os01g0837800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044741.1); similar to Os05g0461900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055764.1); similar to cation diffusion facilitator 10 [Stylosanthes hamata] (GB:AAO38709.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.232529627195942 -2.32794066830716 0.0402514641420613 1 1.58029547562292 20.2717813429769 -0.232529627195942 0.0963297605373543
AT4G17520_at 8.82682533550532 8.90622305289695 8.58406778385393 8.53662307590609 8.72408451092498 8.4434592643147 8.85713277841708 8.94781559817785 8.86227481867912 9.09717967754937 8.87748148998213 9.08930780819122 8.80418765929393 8.77285742409047 9.20310127373668 8.89725805702551 8.63904321639551 8.74880552210879 8.95917623485263 0.128689224785328 0.126973439078397 0.133029230391915 0.129678604704976 0.124095152378744 0.129541441053074 0.126847683815493 0.124750173608700 0.127901186585995 0.132963602212084 0.133446537513771 0.125460386197981 0.130882711930118 0.134158973236499 0.124095152378744 0.129273597275919 0.129372210124510 0.128441299042195 0.127703406151524 4 4|0 +|/ 9772315 9773300 9772969.3 9771310 9773605 + gene protein_coding_gene FALSE TRUE AT4G17520.1 nuclear RNA-binding protein, putative similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to nuclear RNA binding protein, putative [Brassica oleracea] (GB:ABD65067.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861) -0.20315606825336 -2.32763810892069 0.0402728525609095 1 1.57983586673265 17.6542200333563 -0.20315606825336 0.0534873027609935
AT2G34750_at 8.09370670898945 8.36255233950804 8.02559292742637 7.81908665901656 8.30761389383657 8.00239201781532 7.8440734443427 7.81383331068733 7.9677775253299 7.92402310286998 7.59895483772565 7.94270924740097 7.63204329605235 7.75493331586012 7.77969474535841 7.60811681062915 7.04468957381772 8.02389777519754 8.4727483459815 0.220501503347747 0.205446298936537 0.227363114515493 0.22293686093602 0.209241377734834 0.214718548141628 0.218086392158932 0.207075066677898 0.229294507443144 0.218306371718261 0.200008216244594 0.205630618868991 0.208318314744841 0.211244388253237 0.205948632842081 0.206754252533992 0.245838358427583 0.217154620073116 0.204271517419432 2 0|2 /|- 14667545 14668038 14667816.444 14667378 14671345 - gene protein_coding_gene FALSE TRUE AT2G34750.1 RNA polymerase I specific transcription initiation factor RRN3 family protein similar to RNA polymerase I transcription factor [Arabidopsis thaliana] (TAIR:AT2G39240.1); similar to RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis thaliana] (TAIR:AT1G30590.1); similar to putative RNA polymerase I transcription factor RRN3 [Oryza sativa (japonica cultivar-group)] (GB:BAD45608.1); contains InterPro domain RNA polymerase I specific transcription initiation factor RRN3; (InterPro:IPR007991) -0.219128225415032 -2.32707592171626 0.0403126236624984 1 1.57898190714551 15.9309295501940 -0.219128225415032 0.0791141254229032
AT1G30540_at 6.47176041994053 5.8878486243164 6.42371849142909 6.08593242296082 6.37717789632411 5.6247781028124 5.79225230862215 5.44697673359336 5.8824573131946 5.41165202629629 5.71750353455628 5.81306302243309 5.65923555983425 6.10430669499421 6.05842409423532 5.86604004556691 6.08790853866101 5.91466591408603 5.16860367406334 0.222175844865932 0.216042991584616 0.235011076352793 0.212475322744645 0.217474523705019 0.221123183737077 0.211952289100677 0.209725189479545 0.215356069625 0.211687982204446 0.213272806199461 0.209083981468163 0.209044660430685 0.206649774890175 0.207184591709205 0.208877249658146 0.221910588988261 0.215861367931159 0.209248683385950 1 1|0 -|/ 10817097 10818175 10817601.6 10816756 10819344 - gene protein_coding_gene FALSE TRUE AT1G30540.1 ATPase, BadF/BadG/BcrA/BcrD-type family similar to Os09g0133700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062632.1); similar to hypothetical protein DDBDRAFT_0186012 [Dictyostelium discoideum AX4] (GB:XP_638627.1); similar to Os07g0147700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058888.1); contains InterPro domain ATPase, BadF/BadG/BcrA/BcrD type; (InterPro:IPR002731) 0.321632313895655 2.32599559445434 0.0403891563820574 1 1.57734104936026 11.7089128400318 0.321632313895655 0.184802051183770
AT1G30760_at 0.863871141386267 0.680923690879909 1.03605523356033 1.06266225993632 1.02140892967186 1.18421104484506 1.17802485402382 0.719289545230728 1.40428168799436 0.793123733456759 1.03494996365020 0.917411058946048 1.20499685011812 1.37093849603756 1.40251766294440 1.74451163039712 1.65983250103123 1.30271568707025 1.07482538856793 0.207105212110794 0.208232677366007 0.208540354705851 0.207894704293817 0.206655664910812 0.219707246386398 0.209011946615032 0.206655664910812 0.209104540742972 0.207589057201579 0.217929465557508 0.218139156720491 0.216792768308294 0.208183985900171 0.207449936207529 0.206655664910812 0.22466848101889 0.207124132417391 0.209411104688875 1 1 + 10919404 10920081 10919687.273 10918260 10920659 + gene protein_coding_gene FALSE TRUE AT1G30760.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23), electron carrier [Arabidopsis thaliana] (TAIR:AT2G34790.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44400.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90048.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.227273843528948 2.32555968908120 0.0404200765971523 1 1.57667903082061 2.17854475474881 0.227273843528948 0.0901082050778577
AT1G60070_at 8.13109051124715 8.03559349559766 8.08345675141062 7.88424955844663 8.16922156532138 7.98651427655286 8.41830740531708 8.07021410348943 7.76520608782757 7.80919524827699 8.34576663602988 8.77662787886657 8.2204093294037 8.26938595402503 8.62346767493215 8.34718391714757 7.9348604396279 8.42408649304394 7.82068626452486 0.142533506228779 0.140192650694078 0.143204352317529 0.144558654252677 0.143611585732711 0.143843332618060 0.138121530590859 0.138826665648877 0.154713065316618 0.138704612134575 0.135897087426706 0.139701371909463 0.134653988526121 0.146738933350742 0.133510574063181 0.134316630974707 0.140377738101694 0.142471220285942 0.136345730857808 1 0|1 /|- 22147215 22147674 22147481.222 22146270 22153191 - gene protein_coding_gene FALSE TRUE AT1G60070.1 clathrin binding similar to GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1), clathrin binding [Arabidopsis thaliana] (TAIR:AT1G23900.2); similar to adaptor-related protein complex 1, gamma 1 subunit isoform a [Homo sapiens] (GB:NP_001025178.1); similar to PREDICTED: similar to adaptor protein complex AP-1, gamma 1 subunit isoform 2 [Rattus norve (GB:XP_341687.2); similar to Putative gamma-adaptin 1 [Oryza sativa] (GB:AAK98709.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Alpha/gamma adaptin, C-terminal; (InterPro:IPR008152); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Gamma-adaptin, C-terminal; (InterPro:IPR008153) 0.218210082930750 2.32548719419031 0.0404252211180619 1 1.57656893453096 16.1803739953867 0.218210082930750 0.078038652074147
AT3G22520_at 6.85833939244722 7.39601214508251 6.83755665487267 7.0161218392352 7.18878934295098 6.8986007947864 7.42171022018163 7.61366712624751 6.14335322967474 5.81835248675829 6.3341450098999 5.99568385898669 6.18066123422658 5.28071720919739 6.38807499862495 6.46928712997468 5.88280378546781 5.78790419633519 6.63840917188592 0.276629523148668 0.280857708069016 0.272484596123295 0.277623231909701 0.269893769263415 0.283263933166487 0.269893769263415 0.279798548942137 0.288626882783021 0.274127780452605 0.275376611133633 0.269893769263415 0.269893769263415 0.284706678241810 0.275511494581262 0.269893769263415 0.277758730101570 0.278470659477624 0.273379015014110 3 3 + 7976834 7977381 7977118.364 7974769 7977597 + gene protein_coding_gene FALSE TRUE AT3G22520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14840.1); similar to CDPK adapter protein 1 [Mesembryanthemum crystallinum] (GB:AAK69758.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.248646840647786 -2.32547798446815 0.0404258747212441 1 1.57655494800752 13.2738236764482 -0.248646840647786 0.115056543555637
AT2G30320_at 5.24659360581986 4.91566196842124 5.18182891537717 4.52569141236663 3.94655643306033 5.12080654087913 5.69854746581831 5.66792626009789 4.82378373059601 5.03640452997161 4.74850810655427 5.07684321785989 4.6943374267392 4.93649797581689 5.43526413746946 5.21003524525095 5.07155741342391 5.17822671167823 5.52768782855417 0.229400986166511 0.212957735930952 0.218623162930523 0.215595680410992 0.219917006924501 0.219532549774557 0.223204929773510 0.225401024858835 0.224475528766171 0.223382693518749 0.216537081154343 0.216101112617762 0.216764106770078 0.226454275563837 0.216498767563115 0.215712734501866 0.215773442106798 0.212732265870514 0.218276035619913 2 2 - 12932815 12933452 12933151.636 12932805 12934973 - gene protein_coding_gene FALSE TRUE AT2G30320.1 tRNA pseudouridine synthase family protein Identical to Putative tRNA pseudouridine synthase (EC 5.4.99.-) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) [Arabidopsis Thaliana] (GB:O22928); similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G76120.1); similar to tRNA pseudouridine synthase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95839.1); similar to Os03g0338600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050056.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) -0.386922374988336 -2.32471678935940 0.0404799311558373 1 1.57539899532923 10.1245519797582 -0.386922374988336 0.23978115658566
AT1G69620_at 11.3411460664450 11.505177145925 10.9822928068033 11.0373268038494 11.1938873316761 11.1457418623115 11.0953013791590 11.3841224387011 11.4932558184280 11.3069883372779 11.3003799894922 11.4203263697719 11.2758954021147 11.387055729412 11.4098770650090 11.0304438827070 10.7632489916609 11.0666516131907 11.3300766827447 0.077015812696092 0.0725835145988834 0.0742405001667693 0.079880368597871 0.0719005444035308 0.0765585672952399 0.0715169501556302 0.0731875010393243 0.0758039091097806 0.0744365173715422 0.0737581719234328 0.071122642766845 0.0725041236939565 0.0725920033940822 0.0748534447290214 0.0721666773720152 0.084572865252758 0.072871968857673 0.0727978645668455 1 1|0 +|/ 26193581 26194659 26194120.375 26193499 26194986 + gene protein_coding_gene FALSE TRUE AT1G69620.1 RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana] (TAIR:AT1G26880.1); similar to 60S ribosomal protein L34 (GB:P41098); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.205831644397255 -2.32470172903993 0.0404810013718766 1 1.57537612571116 22.5023787259771 -0.205831644397255 0.0588565314052536
AT4G36780_at 7.31914124514226 7.55815096115698 6.84831610941284 6.50840869883886 7.89107777047435 7.82131809361772 7.27727064231183 6.38768277421674 6.17484553136945 5.77359158313402 6.25156383109111 6.44029452438941 7.159171365162 5.86121352834378 6.48091804331492 6.31341917926182 6.56797706178021 6.38923672250574 5.9149945995414 0.240769364943498 0.239394419168309 0.238632761100938 0.253176404992954 0.244007727950047 0.250335940714538 0.24030115367405 0.243809627947546 0.252762058605298 0.235777196516323 0.237408533878818 0.241658249361727 0.234308035229537 0.234179142992652 0.240862543717019 0.234621721060871 0.246450756985892 0.240427826430027 0.23862685839931 4 4|0 -|/ 17333285 17334163 17333670.3 17332523 17334347 - gene protein_coding_gene FALSE TRUE AT4G36780.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 2 (BEH2) [Arabidopsis Thaliana] (GB:Q94A43;GB:Q7FC21); similar to brassinosteroid signalling positive regulator-related [Arabidopsis thaliana] (TAIR:AT3G50750.1); similar to Os06g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057840.1); similar to Os01g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042330.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB33003.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) 0.305107903172578 2.32421179384262 0.0405158320476914 1 1.57463216367206 13.3951465468945 0.305107903172578 0.170342029675706
AT1G65295_at 5.76362764386855 6.42728508923362 6.05987908545692 6.2829566636484 7.21837191488589 6.9015888081945 7.51988150326567 7.3888348931911 7.40789976702841 7.04797428585686 8.33743377872038 8.1148368789638 8.1175930938375 8.17837032502501 7.76100324818866 7.5752242493562 6.86466316097492 7.74656908703611 6.9718032542559 0.235089991866917 0.218910406096590 0.239868284000148 0.230365532614412 0.223848566411194 0.241558954006651 0.239497275746948 0.229757604096397 0.241059900868384 0.226291688516137 0.222593702806904 0.224024456276744 0.236595025827462 0.244984943641927 0.235216615483061 0.218910406096590 0.239308257365970 0.229728672356463 0.229888852603911 1 1|0 +|/ 24255252 24255693 24255546.1 24255174 24255966 + gene protein_coding_gene FALSE TRUE AT1G65295.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01015.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28368.1) 0.267597230519565 2.32415175305290 0.0405201024833294 1 1.57454099517144 14.1850636152897 0.267597230519565 0.134908243854846
AT1G64810_at 8.4392139700643 8.5537219510909 8.34013283409943 8.90606092827039 8.66559532153157 8.2438206372906 8.65903301201218 8.69571058014116 8.09384770310218 7.77952340749139 7.29569953702242 6.82094072526246 7.51183238879889 7.33360891074722 6.28654639788883 7.8091490252408 7.62500747182128 7.42122030696876 7.31206232051879 0.234505910899345 0.233833820405385 0.230213086539933 0.235573399672261 0.239401634754606 0.240754869668838 0.247499060653458 0.239381481470808 0.236497523125046 0.233688198034541 0.240289093159671 0.242664086647450 0.231784195307232 0.240345714233806 0.240972733671301 0.230160979498336 0.252861854875437 0.234087662961714 0.238801714552754 1 1 + 24091340 24091910 24091692.727 24090221 24092201 + gene protein_coding_gene FALSE TRUE AT1G64810.1|AT1G64810.2 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) chloroplast APO1 Identical to APO protein 1, chloroplast precursor (Accumulation of photosystem I protein 1) (Protein ACCUMULATION OF PHOTOSYSTEM ONE1) (APO1) [Arabidopsis Thaliana] (GB:Q9XIR4); similar to APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) [Arabidopsis thaliana] (TAIR:AT5G57930.2); similar to H0525G02.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86305.1); similar to OSJNBa0008M17.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE04336.2); contains InterPro domain Protein of unknown function DUF794, plant; (InterPro:IPR008512) -0.256747331465542 -2.32356181240320 0.0405620854840927 1 1.57364523754953 16.0586503572324 -0.256747331465542 0.123903491281328
AT4G33890_at 7.92604187518311 8.26782919979175 8.12742756274052 8.3418541982124 8.42232348339774 8.33490685273444 7.88282698178096 7.62214154814332 7.06647895485246 7.16934930781024 7.24497974376324 7.00998412923876 6.98603845909143 7.25022847612694 7.20490176694664 7.45332781850196 7.55107014330242 7.0832488980731 7.24234800517686 0.168354469939528 0.166543935120321 0.168371303370140 0.168880224733098 0.169861525588649 0.170772114145523 0.167617493935557 0.161241121723772 0.168333831220420 0.161241121723772 0.165476819870864 0.165676487674491 0.168150529572516 0.163884359507938 0.169446811668617 0.162611009972983 0.174014160612738 0.166058130601104 0.163289748619008 4 4 + 16250520 16251055 16250725.455 16249648 16251384 + gene protein_coding_gene FALSE TRUE AT4G33890.1|AT4G33890.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14850.1); similar to hypothetical protein MA4_8L21.20 [Musa acuminata] (GB:ABF70007.1) 0.222749231573601 2.32350542281019 0.0405661006370657 1 1.57355961956368 15.3068512220782 0.222749231573601 0.0844953320754933
AT3G04900_at 1.42905393410991 1.36356369425855 1.95185660149985 1.87363222023305 0.953154575247955 1.68151003599077 1.18544319302974 1.24995500687722 1.35981600955178 0.638913225635317 1.15974049169945 1.19580548971573 1.56216711803887 1.15467036781726 1.49237507847218 0.850715640304568 1.60533292141234 1.01279656829811 1.12531451331300 0.198922294667086 0.2055146788093 0.205061828130066 0.205586824231564 0.198922294667086 0.201530203727826 0.198922294667086 0.211939670619329 0.203697225283606 0.205810810418778 0.200886197916549 0.203490635076105 0.205300292762301 0.203872873857771 0.206715663000368 0.207000507453937 0.201067534991174 0.199823187208711 0.218284411386693 3 3 - 1349319 1349853 1349578 1349308 1349934 - gene protein_coding_gene FALSE TRUE AT3G04900.1 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23882.1); similar to heavy metal-associated domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96467.2); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.260443472238581 2.32327271849752 0.040582674128944 1 1.57320630360521 2.60879534547414 0.260443472238581 0.127764451865120
AT1G78560_at 4.91157593293727 5.13773724752127 4.65475631774674 4.5466682469282 4.73334760640038 4.71221544092271 5.3153035200217 4.66740492443333 3.99740752710649 4.61032100887281 5.45896895999731 5.36399127818787 5.14444106590164 5.22942966766806 5.41230105572158 5.13007038835463 4.85419739497436 4.76564010652761 4.34401463192966 0.199748058155308 0.193767384951465 0.197272238420797 0.201120153245883 0.212457165948378 0.195585329391426 0.189818421981353 0.197267138883992 0.195816721211856 0.192350269314245 0.194106596082696 0.188436680348494 0.202523239734027 0.19201537175997 0.203088216178001 0.189731975695805 0.200046263414467 0.194160114091807 0.195542355359660 1 0|1 /|- 29551835 29552542 29552182.25 29551498 29553717 - gene protein_coding_gene FALSE TRUE AT1G78560.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT2G26900.1); similar to Os04g0381100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052601.1); similar to OSIGBa0092E09.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66374.1); similar to Na+-bile acid cotransporter (ISS) [Ostreococcus tauri] (GB:CAL53689.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) 0.253186881900713 2.32251593915220 0.0406366181368743 1 1.57205734774237 9.57844001076542 0.253186881900713 0.120276244464611
AT1G33265_at 2.97410479468199 2.61039251261434 2.77482444903365 2.61952805707041 2.84561901186910 2.12399732240711 1.83381952687944 1.60276998966440 1.89178898380378 1.48618447127092 1.42451802686855 2.13004965070873 1.45466301574431 2.22973954292229 2.30289749742872 1.84565171174827 1.70378728777595 2.20140635565635 1.67981158111921 0.22938277180789 0.239922533648776 0.228021889318659 0.237056608844612 0.224213648566632 0.245519746567257 0.224213648566632 0.226997400056751 0.232213109676796 0.228709374613795 0.227287142270646 0.224339597067708 0.243470138823885 0.233394735234081 0.234485394637371 0.232642809817132 0.233656362191024 0.226658673325731 0.233024281674463 1 1|0 +|/ 12066645 12067754 12067240.25 12066575 12068055 + gene protein_coding_gene FALSE TRUE AT1G33265.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43520.1); similar to H0404F02.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66731.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.280690647421850 2.32233335030304 0.0406496436252831 1 1.57178015311155 4.22189069877986 0.280690647421850 0.147911163033572
AT2G38800_at 10.2858526551259 10.4788146119806 11.0413291644664 11.0757773622326 11.1492402888911 11.0075440833732 10.7483568441324 10.6226784348963 10.2520569558144 10.7902048425712 10.4687645563204 10.1763130525598 10.6185188536782 10.4698686692499 9.94478228442296 10.8163705932390 10.6791441486930 10.4571678963710 10.7260373083818 0.0944404230955855 0.0944404230955855 0.098815436259963 0.0956001405707983 0.0984315388730315 0.0983639357687936 0.0973773550945263 0.0981986888337927 0.106905296829802 0.0975484696218887 0.0981956181301273 0.0956492334386302 0.0944404230955855 0.097871083589946 0.103995490853726 0.0952569376758762 0.100956895173744 0.101859408644291 0.0944404230955855 2 2 + 16225365 16225891 16225685.636 16224077 16226237 + gene protein_coding_gene FALSE TRUE AT2G38800.1 calmodulin-binding protein-related similar to calmodulin-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G54570.1); similar to Calmodulin-binding, plant [Medicago truncatula] (GB:ABE88376.1); contains InterPro domain Calmodulin-binding, plant; (InterPro:IPR012417) 0.199490154717329 2.32153621963458 0.0407065564307827 1 1.57057006908237 21.3228488268403 0.199490154717329 0.047169340649912
AT1G09410_at 1.81127897702735 2.06783191373581 2.07592926306342 1.82973665756773 1.41197052030792 1.62070620218884 1.69324122899242 1.58585093104386 1.71920692398172 2.32733312744701 1.57363034920842 1.53633395515758 1.33540819492696 1.62592828182147 1.52858204299261 1.76283411693315 1.81117866480814 1.98514155994177 2.01224473720205 0.191273696106627 0.191345126995773 0.188012178156336 0.190230651585300 0.199004838596678 0.200087280886715 0.197532209958628 0.192308370397214 0.195867533066324 0.188012178156336 0.192040813217069 0.189442132228148 0.188012178156336 0.191103601553005 0.191908847944912 0.188997235301294 0.197824881495357 0.19241588480399 0.19200840040285 1 1 + 3036967 3037398 3037149.636 3035445 3037562 + gene protein_coding_gene FALSE TRUE AT1G09410.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G56690.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to hypothetical protein MtrDRAFT_AC139526g18v1 [Medicago truncatula] (GB:ABE80149.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95626.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.214840192868858 -2.32146158351627 0.0407118891707672 1 1.57045677344353 3.5943054993746 -0.214840192868858 0.0737329587861099
AT3G28910_at 5.06155007194326 5.39907922039423 4.49477757152634 4.69217148876416 6.11573191853893 5.59293391449776 4.39649402365584 4.02643722745088 4.58384306233206 3.84473062291349 4.58342550939984 4.74088012842525 3.73897229909649 4.88218152608372 4.39820092727796 3.00840559574687 3.53881301563782 4.47047353420388 4.01754365873109 0.222190147393117 0.216998879967814 0.222878314442385 0.224506159615052 0.226626911583645 0.223147925707019 0.217395307190527 0.219125504226811 0.224217092439368 0.214418853867919 0.220897677873754 0.217738210732517 0.219066500198471 0.218110521764018 0.224585349587145 0.214418853867919 0.241519918385608 0.221446927166430 0.217484138022118 3 3 + 10913533 10913944 10913726.909 10912394 10914427 + gene protein_coding_gene FALSE TRUE AT3G28910.1 MYB30 (myb domain protein 30); DNA binding / transcription factor transcription factor myb homologue similar to MYB96 (myb domain protein 96), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62470.2); similar to myb transcription factor MYB30 [Gossypium hirsutum] (GB:AAZ83352.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.262238436564588 2.32097739139827 0.04074650101956 1 1.56972180644972 9.13183435375119 0.262238436564588 0.129865974639577
AT3G53620_at 4.31791858849638 3.42261982594330 2.74126054373938 2.80565474292768 3.13214875971171 3.22009261629930 5.11948857400756 5.23329707195172 5.22610339231786 4.9243089009333 6.35417248172365 7.1753319326822 5.05643252881018 6.35208423623631 7.40168339775422 5.86136092104095 5.23545407218758 6.08457873102413 5.51705836430322 0.257130165171359 0.245107141010356 0.249858252839014 0.263508183555446 0.255805965127583 0.252529138751732 0.242621406535860 0.249815156914029 0.244496953740843 0.243041396695397 0.245415474310906 0.251676748560038 0.246099613274416 0.248583203874148 0.252881838389447 0.245419965417446 0.250004880995222 0.245188739888568 0.246661837481041 3 3|0 +|/ 19892540 19894093 19893472.75 19891482 19894650 + gene protein_coding_gene FALSE TRUE AT3G53620.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT1G01050.1); similar to putative inorganic pyrophosphatase [Arachis hypogaea] (GB:CAG30522.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) -0.290447390466308 -2.32068789795699 0.0407672086586625 1 1.56928239697493 9.45537384381823 -0.290447390466308 0.157317348680332
AT1G03457_at 2.57326225876976 2.39622049514641 2.84028153674221 3.045440428023 2.78681284653143 2.98163213598229 2.78738262039843 2.68221377975111 3.08790859793532 3.03841002504604 3.3052737340867 2.94562301685868 3.26511385323975 3.24809323920091 2.71274447669826 2.92707133445288 3.10596187821356 3.08883591197887 2.77130998979553 0.236397502154829 0.236297209470274 0.238864710056706 0.246799462997247 0.23453156804373 0.240122248940626 0.234915694887246 0.234851412925896 0.251568791985503 0.237684408996237 0.244979056397179 0.234168671022871 0.237124695312647 0.240912233122541 0.238354383974708 0.233539212179956 0.237581056051465 0.247652412690048 0.236524003098151 1 1 - 861155 861803 861566 860788 864075 - gene protein_coding_gene FALSE TRUE AT1G03457.1|AT1G03457.2 RNA-binding protein, putative similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G03110.1); similar to Os01g0938200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045340.1); similar to Os05g0373400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055367.1); similar to 'unknown protein, contains RNA recognition motif,PF00076' [Oryza sativa (japonica cultivar-group)] (GB:AAT58838.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.206367712317773 2.31974143884230 0.0408349804023184 1 1.56784591074610 5.78201370509316 0.206367712317773 0.06055652209107
AT1G67290_at 2.70594725984203 3.14980314167995 2.87769780957728 3.13385997346444 2.66844987194542 2.74160212609907 2.8139419060875 3.06787594646496 3.41403172362888 3.29960436129762 2.89973670163827 2.78235792602272 3.30115294876337 2.83955315316394 2.98249060060845 2.92335875512682 3.02688682087471 3.3336215947022 3.49025181090248 0.238402646553932 0.243113046385389 0.253588618881936 0.243316659597724 0.248962039052077 0.256527344610289 0.242614059077906 0.246899103112089 0.253222176508324 0.243978999111485 0.245104126860837 0.24111980628736 0.241696145858854 0.248215216917942 0.241578351460242 0.241173371084302 0.251546859847067 0.238965022080709 0.243039836898579 1 1 - 25194850 25195377 25195094.545 25194684 25196900 - gene protein_coding_gene FALSE TRUE AT1G67290.1 glyoxal oxidase-related similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT5G19580.1); similar to Os01g0677000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043851.1); similar to Os05g0559000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056298.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Glyoxal oxidase, N-terminal; (InterPro:IPR009880) -0.234570385455413 -2.31961599993366 0.0408439706884870 1 1.56765553794675 6.10111764333952 -0.234570385455413 0.0997823117935476
AT1G43010_at -0.247357214053586 -0.0834518444053919 0.303715539854202 0.337604246024552 0.284736152376247 0.534692763783116 0.274030903643598 0.426461103408368 0.0430722467873279 -0.314101739572504 0.0447916776457485 0.141572391130849 0.728216076094825 0.0851797135669069 0.188617022701022 0.0279224849775218 0.0259887699012812 -0.0601277090568877 0.302816967791333 0.203859884433811 0.201609830271583 0.207045043389979 0.202623418220059 0.201609830271583 0.207703663659625 0.201609830271583 0.203106137934160 0.224804839278785 0.208975891148861 0.211224656788153 0.204580620375099 0.212319184308511 0.201609830271583 0.210714038901687 0.208818887065408 0.206067651980845 0.212617916767722 0.207432140701382 1 1|0 +|/ 16156240 16156737 16156552.7 16156049 16156908 + gene protein_coding_gene FALSE TRUE AT1G43010.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G28020.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.204970333364694 2.31814005367469 0.0409498963524141 1 1.56541577117698 0.307986895514993 0.204970333364694 0.0583598952599535
AT4G24810_at 6.26099133339013 6.15260000860626 6.76371330009232 6.51363564588858 7.22880241271304 6.57614838809913 7.11151046116939 6.4848195733072 6.24748676528967 7.15751653532944 5.52901473286479 5.84105579368597 6.35099741703891 5.9495441279155 5.32764414412492 6.75512856811466 6.39824007995955 5.90591726818788 7.20175456589114 0.237621636266363 0.215575040165741 0.228009273009717 0.227792404821896 0.226066995209007 0.219575782754549 0.222084620956564 0.218348726386625 0.222629264623372 0.217963834661480 0.217848418921141 0.217573484836615 0.217878685193478 0.231071076719348 0.227040964463803 0.215575040165741 0.226077123090286 0.215896684513694 0.218161871810471 4 4 - 12786938 12788230 12787325.182 12786618 12789792 - gene protein_coding_gene FALSE TRUE AT4G24810.1|AT4G24810.2 ABC1 family protein|ATP binding / electron carrier/ heme binding / iron ion binding / protein kinase similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147) similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT5G50330.1); similar to Os01g0904200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045121.1); similar to ABC transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147)|similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT5G50330.1); similar to Os01g0904200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045121.1); similar to ABC transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.296815964885101 -2.31794890784793 0.0409636338862171 1 1.5651257331203 13.0745836680699 -0.296815964885101 0.163533109843068
AT2G44210_at 10.2228981633320 10.4978645704424 10.0677158663291 10.2736486334647 10.5374022962884 10.3321604289489 11.0951575797171 11.1849424665378 11.4878810719920 11.2090799012656 11.3508832789667 11.4580609091659 11.1252229874231 11.2855396046956 11.3169805036472 11.2406940248214 10.6710075650550 11.6979250987875 11.04145475183 0.08223535782317 0.0792621697263265 0.0835773315706805 0.0850378701763662 0.0798080492296435 0.0818585756008268 0.078828357905019 0.0790948908980094 0.0835911501820615 0.079934910881168 0.0828594265579594 0.0784819533992113 0.0784397205780871 0.0858467085681763 0.0841884247120925 0.0797858088807598 0.0895635533824889 0.0807845245161691 0.0816843154424445 2 0|2 /|+ 18288927 18289617 18289240.1 18287699 18289952 + gene protein_coding_gene FALSE TRUE AT2G44210.1|AT2G44210.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55360.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13510.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55360.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.212666608604222 -2.31792369122569 0.0409654465216664 1 1.56508747077295 21.7836876614323 -0.212666608604222 0.070973593346073
AT3G62310_at 6.38566243878622 6.69625762235637 6.00688055694591 6.17857376964866 7.02339874988397 6.61964028899057 6.79652508383583 6.8685909969485 6.33296380855268 6.49974973981449 6.27805032211069 6.74824002261006 6.14565931497689 6.32907609186015 6.42003981535501 6.57963004959482 5.98094438931 6.31372227829748 6.90372678477102 0.202348680715659 0.198367417554252 0.216193750722160 0.213383762837498 0.198367417554252 0.207132308394696 0.207569069463082 0.204874787925521 0.209376182563473 0.204107763713705 0.203696387812278 0.198398064164649 0.201587050489750 0.207161085307228 0.206892469662596 0.204822219208744 0.217147996057120 0.202858781793136 0.199943669143477 3 3 - 23068562 23069277 23068905 23068221 23071706 - gene protein_coding_gene FALSE TRUE AT3G62310.1 RNA helicase, putative similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G47250.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95605.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE87664.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL50218.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.229514426489728 -2.31790612029881 0.0409667096107173 1 1.56506080965923 13.0360580533714 -0.229514426489728 0.0938591955195111
AT1G13790_at 1.87751203353023 1.3056386888778 1.55137927102597 1.75556361873084 1.63280522626532 1.98645698325959 1.45265928461538 1.78685719991932 1.63466685543515 1.31042032918806 1.64995454357364 1.84307302600318 1.77084086808152 1.64392474005614 2.42686296377362 1.94715716332618 2.20939773140532 2.22072457188766 1.72491046699277 0.207369132337126 0.195786118249608 0.197950671149437 0.195143434928643 0.198362043935561 0.198336854787261 0.193642290560597 0.19559199301598 0.197866012626410 0.205375216485637 0.193867297298234 0.194587151710050 0.198315510498233 0.200369947871965 0.208494490026929 0.195278919696668 0.213247974893422 0.205501202263858 0.208761372984041 1 1|0 +|/ 4729399 4730174 4729808.6 4727435 4730226 + gene protein_coding_gene FALSE TRUE AT1G13790.1 XH/XS domain-containing protein / XS zinc finger domain-containing protein similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48670.2); similar to putative transcription factor [Oryza sativa (japonica cultivar-group)] (GB:BAB21190.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379); contains InterPro domain Region of unknown function XS; (InterPro:IPR005380); contains InterPro domain Region of unknown function, putative Zinc finger, XS and XH; (InterPro:IPR005381) 0.266605270113081 2.31769437181391 0.0409819341438302 1 1.56473951897783 3.42893795572076 0.266605270113081 0.134659235171213
AT2G40740_at 3.61013523413428 3.65594940707138 3.75679039410959 3.8959340379317 3.28529349032164 3.52622557370300 2.37744231733221 2.50553090273328 3.46361128872683 2.55902370451763 2.8225675313712 2.92127889088023 2.66815519580932 2.59173482346379 3.17470237150313 2.97111922012079 2.46511637674474 2.73333637287394 2.88039327688081 0.220206776784984 0.219186591690459 0.219472634629119 0.216221327957311 0.212801019928905 0.217328522678924 0.212691061601972 0.218461642143007 0.214816143174987 0.212990098096082 0.216084720386099 0.224553134992001 0.211993578791855 0.216959389294203 0.211993578791855 0.214594658011049 0.236819806601449 0.213664336358653 0.222838188839452 2 2 + 17004563 17006252 17005558 17004255 17006354 + gene protein_coding_gene FALSE TRUE AT2G40740.1|AT2G40740.2 WRKY55 (WRKY DNA-binding protein 55); transcription factor|WRKY55 (WRKY DNA-binding protein 55) member of WRKY Transcription Factor; Group III Identical to WRKY transcription factor 55 (WRKY DNA-binding protein 55) (WRKY55) [Arabidopsis Thaliana] (GB:Q9SHB5;GB:Q7G9H9); similar to WRKY53 (WRKY DNA-binding protein 53), transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to transcription factor WRKY5 [Petroselinum crispum] (GB:AAG35659.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.202310833251418 2.31730775735892 0.0410097454832375 1 1.56415292071705 6.20725138861096 0.202310833251418 0.0535952407606358
AT4G16330_at 9.02981566411897 9.2931242334227 9.2858455139914 9.30804921114975 9.74470766109812 9.55887019269113 8.68869573545077 8.77304989321681 8.58632614075269 8.77556255053702 8.41976962885872 8.2240603398519 8.70555736932269 8.57356209155739 8.35166078149339 8.6058461051779 8.66476190683753 8.66055542969353 8.5727532229667 0.179511196416450 0.173030072671989 0.184764374160136 0.170632042919263 0.176833595137337 0.182630231194196 0.180220824971262 0.171084234363591 0.201362911920434 0.173713971286850 0.175363310987303 0.173583067395601 0.175509175651914 0.184861191197046 0.181906800768869 0.169566539327401 0.170106571576031 0.177815720359837 0.169459264800874 4 4 - 9226321 9226844 9226569.636 9226181 9227508 - gene protein_coding_gene FALSE TRUE AT4G16330.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G38240.1); similar to naringenin 3-dioxygenase like protein [Brassica napus] (GB:CAC14568.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.204518915846977 2.31670945028198 0.0410528209809593 1 1.56324517984495 17.7955709354848 0.204518915846977 0.0577794240399041
AT3G22760_at 1.71131193841221 2.11649934118972 1.40034199126533 1.29730446547946 1.33726745829495 2.01515611417431 1.39053521392265 1.75594268927047 1.89290383952299 2.30160015059674 1.92337487196289 2.05514016345966 1.65850906407805 1.33479540979135 2.57890975689916 1.74136737602461 1.48094415497574 1.37653634487388 2.12135287183689 0.206476036413459 0.217964475856809 0.206722595432950 0.213042975382006 0.207892446198487 0.208017091784392 0.209850368392686 0.219112414095337 0.211351921600503 0.216968815587068 0.225888121395032 0.209751520917411 0.207788442874087 0.217719991854321 0.209728967660195 0.210695363061928 0.210595821828785 0.213147462209875 0.212755531411536 3 0|3 /|+ 8046874 8047337 8047150.556 8044462 8047537 + gene protein_coding_gene FALSE TRUE AT3G22760.1 SOL1 (TSO1-Like); transcription factor CXC domain containing TSO1-like protein 1. The gene is expressed in stamens, pollen mother cells, and immature ovules. similar to tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14770.1); similar to Calcium-binding EF-hand; Tesmin/TSO1-like, CXC [Medicago truncatula] (GB:ABE82953.1); contains InterPro domain Tesmin/TSO1-like, CXC; (InterPro:IPR005172) -0.283821633144645 -2.31589360269523 0.0411116288458109 1 1.56200749252605 3.56503628320632 -0.283821633144645 0.151642620428189
AT3G46020_at 1.49448753842623 1.78001798586113 1.75938849443569 1.87163487966483 2.43908351889901 1.92695856261977 1.93922168480448 1.86117590505714 1.38429897659427 1.67949419246521 1.80242881030546 2.06205069793288 1.72588043510011 1.69832525585806 2.07184262620970 2.00410581315145 1.8501102632254 1.51230037278553 1.72291509517634 0.199382755599975 0.196073388353797 0.189581107883042 0.193569472522998 0.202426832937636 0.197170483873288 0.192556764286608 0.190494038387944 0.205521264570067 0.200022570118079 0.190712257887170 0.189581107883042 0.197810664328343 0.192974045317090 0.205632411545284 0.191579269143957 0.197619340204962 0.202259354714474 0.198379363381237 3 3|0 -|/ 16923501 16924198 16923912.556 16923465 16924335 - gene protein_coding_gene FALSE TRUE AT3G46020.1 RNA-binding protein, putative similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G59860.1); similar to Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp (GB:1X5S); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.237925849138357 2.31566453564338 0.0411281550576305 1 1.56166000595914 3.60222104908754 0.237925849138357 0.104191268214228
AT1G21630_at 7.56413429874761 7.72681138826401 7.65553904444687 7.82163867195201 8.1190107985291 8.01150481917038 7.66608773645745 7.89481455715366 7.9767926169564 7.54667994857842 8.03720404662815 7.72447615977127 7.79955304671316 7.94352393968208 7.96522627251093 8.0604568095321 7.85613756470215 7.88637199524525 7.53874011103321 0.133836321502595 0.135756980045304 0.138749583240130 0.138726710104198 0.137102684940751 0.135851441248607 0.139382777522817 0.130916192427849 0.153478711507245 0.144517959167542 0.140476908893379 0.137277497122225 0.141173591803416 0.135298416230499 0.137030838594503 0.132016358167598 0.147892653655573 0.133568644364168 0.142949686704233 1 1 + 7587210 7587749 7587483.909 7581141 7588140 + gene protein_coding_gene FALSE TRUE AT1G21630.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G20760.1); similar to EPS15 homology (EH) [Medicago truncatula] (GB:ABE79536.1); similar to Os03g0130500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048855.1); similar to Os06g0728600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058644.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain EPS15 homology (EH); (InterPro:IPR000261) 0.205337921097183 2.31546077231635 0.0411428611031400 1 1.56135091206580 15.6057041417755 0.205337921097183 0.0594276911347968
AT2G45570_at 2.74488092525395 2.66975185334687 3.3708409902528 3.33696770844141 2.95021549776011 2.61580249525478 2.92118542129515 2.76293103255710 2.77380444922055 2.66405729236668 3.14751456372059 2.4403979805731 2.77051647152669 2.74413633708611 3.08728330886726 2.6947703632991 2.69390876757765 2.91846087360574 2.62596698476858 0.190940613885744 0.19199522084022 0.197693845365025 0.200741571050027 0.206519563990742 0.194519845816968 0.202635649652735 0.202834069292348 0.205916261466665 0.192611185917972 0.195604262607967 0.198878343908486 0.193069143527718 0.194302122793607 0.199690143442353 0.190093290324724 0.196550917765533 0.200544752893275 0.203418375396083 2 2 - 18787040 18787513 18787282.7 18786867 18789032 - gene protein_coding_gene FALSE TRUE AT2G45570.1 CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2); oxygen binding member of CYP76C Identical to Cytochrome P450 76C2 (EC 1.14.-.-) (CYP76C2) [Arabidopsis Thaliana] (GB:O64637); similar to CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45550.1); similar to CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT2G45560.1); similar to CYP76C6 (cytochrome P450, family 76, subfamily C, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G33720.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.208975019655385 2.31512979684573 0.0411667591475228 1 1.5608488624687 5.67160523655392 0.208975019655385 0.0655939464495325
AT1G19730_at 6.89606483135016 7.165201809048 7.11495662298165 7.28748476307635 7.73340426270554 7.20390464451816 7.44576732408678 7.12175716250236 6.12153786345136 6.65005515727078 6.77727282894278 6.65338183011272 6.95908015169407 7.06506941935341 6.55499423401623 7.11839716698241 7.03547031327535 6.24103806626236 6.64607912036723 0.175533961045602 0.172754103851816 0.174393191348676 0.174717166362781 0.173618400241734 0.172627630404366 0.174544663772292 0.177810617119508 0.183556024250273 0.180004757231983 0.166499213061699 0.169163278079466 0.171060606761583 0.169916550197522 0.182546233583125 0.168422996875607 0.176178859627936 0.176558038810155 0.170402383871864 1 1 - 6823155 6823964 6823457.636 6822913 6824062 - gene protein_coding_gene FALSE TRUE AT1G19730.1 ATTRX4 (thioredoxin H-type 4); thiol-disulfide exchange intermediate encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. Identical to Thioredoxin H-type 4 (TRX-H-4) (TRX4) [Arabidopsis Thaliana] (GB:Q39239;GB:Q38880;GB:Q9FXH2); similar to ATTRX5 (thioredoxin H-type 5), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G45145.1); similar to thioredoxin h (GB:AAC49355.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) 0.252885206270197 2.31492642474559 0.0411814502518511 1 1.56054038133827 13.8826403683801 0.252885206270197 0.120835423945275
AT3G25540_at 6.4242101198595 6.49213649616875 6.69655803724438 6.21151307956488 7.25211426508488 5.8632354826341 6.3966248704776 6.1453995143381 4.71834838716993 4.97049163599802 5.57014963338643 5.59120949770296 5.54531918362802 5.66277371510626 5.34363793769636 5.71463552209141 5.03314561223167 5.50038598978607 4.77055228016519 0.253229969084405 0.242074888858645 0.253996627610497 0.247447743631254 0.244725685360428 0.252767998329798 0.252294624270334 0.243094076125529 0.265008513807868 0.247119394810128 0.244952441155161 0.246395880465747 0.248404012713369 0.249321629298261 0.259464470192297 0.242659058776217 0.258861766339260 0.250627535181383 0.247037264170814 3 3|0 +|/ 9276733 9277281 9276935.444 9275813 9277922 + gene protein_coding_gene FALSE TRUE AT3G25540.1 LAG1 (Longevity assurance gene 1) LAG1 homolog 1 Identical to LAG1 longevity assurance homolog 1 (LAG1 homolog 1) (LAG1) [Arabidopsis Thaliana] (GB:Q9LDF2); similar to LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT1G13580.2); similar to ASC1-like protein (Alternaria stem canker resistance-like protein) (GB:Q8W4Y5); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Longevity-assurance protein (LAG1); (InterPro:IPR005547) 0.408311083965168 2.31389728273538 0.0412558705967318 1 1.55897945944997 11.5927012686205 0.408311083965168 0.258540485516369
AFFX-r2-P1-cre-5_at 12.9513773295377 13.2934387974376 13.4738496590209 13.3635309363190 13.2045957123623 13.0839873579990 13.213246046307 13.3774931323214 0.224527353908237 0.250713694255623 0.436164489855419 0.645665574986355 0.992014481121235 0.318909156826148 0.377417134463877 0.590250573315078 0.665285626399825 0.605652686272873 0.203843628206107 0.234436887748784 0.227714088317140 0.232940111288573 0.231760569441407 0.22711939280336 0.238419220629593 0.22811541257386 0.228293167113096 0.23721951864345 0.237614766489898 0.232304217996587 0.231121127188352 0.238557643158038 0.232839762710566 0.241784053529119 0.233650510782819 0.237250449542914 0.239223682459792 0.230358600898374 NA NA NA NA NA FALSE FALSE 0.212580248319723 2.31320485277900 0.0413060153186666 1 1.55792934208144 13.6478306335106 0.212580248319723 0.0714989639945134
AT1G23260_at 8.76995476758803 9.0128988614052 8.9808100192412 8.95702653773764 9.02311213867176 8.9126235417414 8.70976308943133 8.73460999512196 9.29065037506672 8.83444172356498 9.5349909792894 9.44526732419202 9.1876631420932 9.49971106886335 9.11310444082068 9.35654255205694 8.85537148637146 9.0743301590065 8.94394238499212 0.110959807028970 0.109966305858257 0.112747241427502 0.118932350067945 0.112378204748494 0.115417499892259 0.120009822071059 0.108919141873514 0.121433379082646 0.114705962393645 0.112620788573410 0.10766038592573 0.112597385820205 0.112735362323456 0.109034018908543 0.108545302033223 0.121795397195210 0.117832472275704 0.115252930843378 1 0|1 /|- 8257200 8257716 8257549.5 8256975 8258677 - gene protein_coding_gene FALSE TRUE AT1G23260.1 MMZ1 (MMS ZWEI HOMOLOGE 1); ubiquitin-protein ligase similar to MMZ2 (MMS ZWEI HOMOLOGE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G70660.1); similar to ubiquitin-conjugating enzyme 2 [Arachis hypogaea] (GB:AAZ20287.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.198473765253392 2.31295421055259 0.0413241809434582 1 1.55754924707131 18.0282919381813 0.198473765253392 0.0465682947485301
AT1G65070_at 5.56734883480974 5.263996308021 5.19000268585094 5.28565124398028 6.0957348278929 5.8684684727711 5.87996727698854 5.51839047109768 5.6674032204274 5.95311971923104 5.1320913677156 5.56153436407532 5.41028475872858 5.22922940034417 5.2351316153787 6.01365089225936 5.72551571193378 5.61375008626586 6.37324880178347 0.180036996767825 0.171643901749363 0.175504256206550 0.172848701792467 0.173375778486553 0.185784994673865 0.176217464611923 0.172630634604687 0.176683620962189 0.185606633159902 0.174729342985063 0.170498452262516 0.185129996106488 0.186437273491807 0.175658560912566 0.173105340665209 0.175928552107732 0.176555971574995 0.181369020971322 1 1|0 -|/ 24176832 24177453 24177102.4 24176795 24179907 - gene protein_coding_gene FALSE TRUE AT1G65070.1 DNA mismatch repair MutS family protein similar to DNA mismatch repair MutS family protein [Arabidopsis thaliana] (TAIR:AT5G54090.1); similar to H0901F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86270.1); similar to OSJNBb0017I01.21 [Oryza sativa (japonica cultivar-group)] (GB:CAE05741.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain MutS III; (InterPro:IPR007696) -0.227618402165867 -2.31256553493725 0.0413523659697453 1 1.55695984874947 11.3277312343773 -0.227618402165867 0.0921520853792812
AT4G16660_at 8.20409940502921 8.19437729340668 8.72490270829404 8.85999189583698 7.72783954105178 6.7785867215336 6.49222140357947 6.27627656387213 6.4863263897208 5.89278917339381 5.96716833186553 6.73099544183317 5.39408343443191 6.04918014667693 6.4534795007353 5.55985662634793 5.33918184685982 6.14730930141815 5.86006615223287 0.226423970174820 0.229423278141516 0.226203212977406 0.221557149529466 0.215306463437069 0.233663212267878 0.219333452604285 0.220506307603801 0.216839897688693 0.221545817019096 0.215306463437069 0.216373592724535 0.217351836197277 0.222836605973043 0.218303463423151 0.215306463437069 0.241035214329016 0.215306463437069 0.215460704386571 4 0|4 /|+ 9380194 9381125 9380626 9376759 9381529 + gene protein_coding_gene FALSE TRUE AT4G16660.1 heat shock protein 70, putative / HSP70, putative similar to heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G11660.1); similar to PREDICTED: similar to CG2918-PA [Tribolium castaneum] (GB:XP_973490.1); similar to Os02g0710900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047898.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 0.303258070264579 2.31221813423671 0.0413775736245299 1 1.55643306365535 13.6747289751856 0.303258070264579 0.170092285137117
AT1G69830_at 10.2891622083491 10.3452905610273 9.54402260896417 9.71553058975548 10.2354779881522 9.88202292688897 10.0505992791833 9.92033688302835 9.30429709861481 9.72615518453713 10.2763970328513 10.4165088446183 10.2703879116229 10.2855828328211 10.3200352936505 10.0926421971022 10.0830627544673 10.2779194976257 9.52916920032252 0.106052473531501 0.101141094146605 0.109142862278413 0.105971648840171 0.113390418838651 0.109769892572061 0.106570603063126 0.099722153527512 0.126366760905017 0.102972274536113 0.103416071630173 0.103485802243136 0.099926447400739 0.108428882356173 0.101340461339573 0.101927419588838 0.110299781694622 0.109171730500984 0.101291444457060 1 1|0 -|/ 26292218 26292976 26292569 26291944 26296716 - gene protein_coding_gene FALSE TRUE AT1G69830.1 AMY3/ATAMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. similar to AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G76130.1); similar to Os01g0715400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044062.1); similar to plastid alpha-amylase [Actinidia chinensis] (GB:AAX33233.1); similar to plastid alpha-amylase [Malus x domestica] (GB:AAX33231.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase beta-sheet, C-terminal; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046) 0.212929756656648 2.31134390936063 0.0414410736674553 1 1.55510751799569 19.8841508173785 0.212929756656648 0.072283040019488
AT3G51850_at 7.16007952298594 7.2154210817936 6.55230750257937 6.84213307713919 7.06867166841233 6.9428136680044 7.60859952724148 7.75053629461861 6.92670467042711 7.15139986758179 7.64691780400227 7.33174829295326 7.18602841055936 7.13996346748898 7.18553259615164 7.54173191500063 6.9939401317024 7.4856883284123 7.3514148259268 0.255401690063628 0.238184063842595 0.231725942971261 0.235388869691967 0.239598649931526 0.267638867293933 0.241745511689538 0.233881260263924 0.259958079851423 0.236100679467677 0.235349089381377 0.22839040426927 0.234885053327976 0.24420744923121 0.236234581959691 0.22839040426927 0.259010367762652 0.237852226607089 0.234580447281267 3 0|3 /|+ 19245103 19246474 19245751.222 19243444 19246862 + gene protein_coding_gene FALSE TRUE AT3G51850.1 CPK13 (calcium-dependent protein kinase 13); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to ATCDPK1, calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G18890.1); similar to CPK30 (calcium-dependent protein kinase 30), calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G74740.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to putative calcium dependent protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92912.1); similar to calcium-dependent protein kinase 8 [Nicotiana plumba (GB:CAG27839.1); similar to calcium-dependent protein kinase [Arachis hypogaea] (GB:AAY67978.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.205703440327067 -2.31131199261819 0.041443393744769 1 1.55505912674057 14.3711287876447 -0.205703440327067 0.0607044172911352
AT1G07440_at 9.73634853014922 9.82076675267423 10.17419837167 10.1166638086645 10.2940261455616 10.1901963197743 10.2529255961553 10.2878481563993 9.45905945431585 10.1711794422109 9.78632743889074 9.65233659179714 10.1682235512123 9.9309793359427 9.80549025613828 10.6501058075572 10.4580719948864 9.98578681669413 9.89706449478192 0.0903076590901328 0.08712120968051 0.0890339065848194 0.08712120968051 0.0890938405854375 0.0894591132410595 0.0906044253323509 0.0871428655258759 0.105369550259980 0.0875278858058691 0.0930784472503054 0.08712120968051 0.0871515059855312 0.0922150197104284 0.0881650780039137 0.0883934103455787 0.0914912795007081 0.0963895789811151 0.0892875277328038 1 1|0 -|/ 2286506 2287356 2286905.444 2286146 2287727 - gene protein_coding_gene FALSE TRUE AT1G07440.1|AT1G07440.2 tropinone reductase, putative / tropine dehydrogenase, putative|oxidoreductase Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G29340.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G29340.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95189.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95190.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.190764831471692 2.31113736419944 0.0414560899735405 1 1.55479436333659 20.0576715540858 0.190764831471692 0.0259217633975142
AT1G70250_at 4.58815439297305 4.11059652150412 4.93678588361815 4.2386617203517 4.40662985996824 3.97923184096069 5.78520812951832 4.56112956387636 3.99904905704729 4.39655713680254 3.83185280813108 3.50449208639589 3.79958213705534 4.03490188072784 3.30663817614251 4.20334367246815 4.23868832334951 3.72533437367987 4.50022104687681 0.188249973262716 0.189339260470723 0.190133501286428 0.197975478993451 0.196684959837854 0.190963878882930 0.198843761561235 0.197960459310858 0.194275231725722 0.194873280971559 0.190922840539851 0.194931963973082 0.192172837789532 0.191360378123766 0.187489537139616 0.188333614116989 0.194749532538288 0.191365931669564 0.202114255756504 1 1 + 26456655 26459677 26458318.474 26456628 26459751 + gene protein_coding_gene FALSE TRUE AT1G70250.1 receptor serine/threonine kinase, putative Encodes a Protease inhibitor/seed storage/LTP family protein similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18250.1); similar to PR5K (PR5-like receptor kinase), kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G38280.1); similar to receptor serine/threonine kinase PR5K (GB:AAC49208.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.419474861870855 -2.31091260919335 0.0414724361426263 1 1.55445360838881 8.64040637033932 -0.419474861870855 0.267898248615504
AT4G08960_at 5.72956970641906 6.19259818630751 5.24266531674117 5.47566275235635 5.63541981658633 5.36573391345828 5.73809780567418 5.56733067474016 5.57826925919041 5.26413726808256 5.24654458319669 5.39863862632568 4.88244524227638 5.82251682428453 5.45281634397898 5.27296777529395 4.87957798890468 5.1268118818642 5.23783008728231 0.203395404771255 0.197754593517447 0.196082693822446 0.200554291928782 0.199826752041313 0.205855821553236 0.193537945839216 0.201292442486726 0.206601997796612 0.196892498821427 0.197861490402381 0.195336318060680 0.206557378909786 0.195403087633201 0.204457770059545 0.196253875333392 0.203226642048804 0.205257050494196 0.203058074507153 4 4 + 5746940 5747467 5747213.364 5746286 5748282 + gene protein_coding_gene FALSE TRUE AT4G08960.1 phosphotyrosyl phosphatase activator (PTPA) family protein similar to Phosphotyrosyl phosphatase activator, PTPA [Medicago truncatula] (GB:ABE93204.1); contains InterPro domain Phosphotyrosyl phosphatase activator, PTPA; (InterPro:IPR004327) -0.23840880337624 -2.31064433987066 0.0414919551996762 1 1.55404689247503 10.9285691614274 -0.23840880337624 0.105346815523993
AT2G29760_at 2.85919844974645 2.74153629918428 2.41837304730138 2.32081134133901 2.37614660201495 2.34320043715864 2.90181190174960 2.55207461039289 2.30154362808751 2.42219163657221 2.47900673349265 2.32405060241030 2.07267547940753 2.39076063742272 2.14705840729179 2.1814613753787 2.25940841113900 2.35693555947125 2.16246745613867 0.178778734106629 0.186415090286182 0.180308620892855 0.168743423068767 0.168743423068767 0.180304335847221 0.177976859210790 0.178329355277918 0.172862054903148 0.170984596811386 0.173502959604242 0.172452760935884 0.173648702531432 0.173703232339321 0.169671734995124 0.175933092165695 0.175435848474105 0.170307670083989 0.170113479921072 2 2 + 12721614 12722149 12721897 12719961 12722177 + gene protein_coding_gene FALSE TRUE AT2G29760.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.209001857247931 -2.31059922385062 0.0414952386751497 1 1.55397849455521 4.85005436495317 -0.209001857247931 0.066296943769681
AT1G71470_at 1.80545470474451 2.40752967777288 2.47332190649650 2.23410743014172 1.72015715707712 1.74217137094717 1.72736531559988 2.53269709461785 2.83509206854023 2.81483589874398 2.16439945038858 2.05812154258654 2.36324019876225 2.16001038229430 2.37941596587085 2.32218621488598 2.31309468780931 2.35745782927918 2.79382145469301 0.231569913256771 0.242024076096563 0.23974613588434 0.236411615387227 0.234252329662004 0.236090275736532 0.231838520776614 0.231738316139134 0.231466224566706 0.248633757077816 0.235420613875531 0.233650815108739 0.238961797767534 0.243167246361252 0.239500047624479 0.238588115540140 0.241528790977903 0.230875554365238 0.248705152260359 1 1 + 26934470 26935045 26934715.818 26934448 26935075 + gene protein_coding_gene FALSE TRUE AT1G71470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22090.1) -0.312832294346300 -2.31048948741937 0.0415032261727451 1 1.55381213070173 4.62001254449655 -0.312832294346300 0.178905526713704
AT3G25470_at 9.41689126503432 9.48189274263308 9.65693186291105 9.55869429421118 9.79327521001542 9.46180568764203 9.6583036278463 9.46565786961312 9.2919425407936 9.57684491917082 9.77224781173688 9.75735937284424 9.7497983353318 9.58914404761108 9.85370817963757 9.76314720123006 9.88524924300865 9.72632979936188 9.48781741746934 0.0955449025586767 0.0915937300357134 0.093752826728724 0.0938645416988828 0.0961234196881711 0.0979895184063372 0.098155394905839 0.0933281550115547 0.0973965571989048 0.0968369486031268 0.0969998448907882 0.0936559063733653 0.0929734922547372 0.093221082652286 0.0915937300357134 0.0915937300357134 0.0982747005349928 0.0970104597166413 0.0987924310291643 3 3|0 +|/ 9235227 9236206 9235671.3 9234156 9236450 + gene protein_coding_gene FALSE TRUE AT3G25470.1 bacterial hemolysin-related similar to Os11g0247400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067614.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53423.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ; (InterPro:IPR002877); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Hemolysin A; (InterPro:IPR004538) 0.210955880223616 2.31039415356128 0.0415101665398705 1 1.55366760335014 19.1688438823166 0.210955880223616 0.0694077027059884
AT4G31160_at 5.52829270213350 5.05694917280010 4.96618156948058 5.16647063465993 5.19119237351819 5.01892828628566 4.76490744205177 4.74604486518135 4.62453976980592 4.34638464717764 5.32349928747481 5.09321163733165 5.08639734680366 5.23074760761656 4.84901641856067 5.4009242434198 4.88546566644974 4.29137719255008 4.90306719613433 0.209328362736907 0.209328362736907 0.218628785072436 0.209328362736907 0.209328362736907 0.225714362972299 0.210754077681599 0.223537516837854 0.221409112944817 0.216619404954661 0.209328362736907 0.210516134811191 0.219102060908222 0.214355371365397 0.21961744070239 0.209328362736907 0.210206036130532 0.222663100028829 0.217285746265411 4 4 + 15152380 15152921 15152528.1 15145942 15153081 + gene protein_coding_gene FALSE TRUE AT4G31160.1 transducin family protein / WD-40 repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to Os04g0691200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054357.1); similar to B0518A01.3 [Oryza sativa (indica cultivar-group)] (GB:CAH68098.1); similar to OSJNBb0020J19.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE05773.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.228530362215494 2.3103703038838 0.0415119029870877 1 1.55363144718792 9.87724277879647 0.228530362215494 0.0935633999282883
AT3G25250_at 3.2935315508869 3.33573679780422 3.70983319567350 3.28442713665042 3.04825329110914 3.14188198395022 2.54395611091748 3.25192776194666 3.35698442818395 3.02926538384123 3.41074573184358 3.19175331783048 3.07740033678228 3.66877378462233 3.54602157097846 3.11162595325725 3.92061105718299 3.20900843185797 2.70787131769757 0.213792409953760 0.213792409953760 0.220866408731624 0.215995949231015 0.232342670872273 0.225811456498838 0.231816587163740 0.219203414096928 0.215345026274993 0.219761639255409 0.217197658083567 0.21639824550841 0.221466677301008 0.221544360595136 0.213792409953760 0.214263455070159 0.213792409953760 0.215574694128802 0.222397351088321 3 3 + 9197588 9198022 9197795.091 9196748 9198361 + gene protein_coding_gene FALSE TRUE AT3G25250.1 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1); kinase Arabidopsis protein kinase Identical to Serine/threonine-protein kinase OXI1 (EC 2.7.11.1) (Protein OXIDATIVE SIGNAL-INDUCIBLE1) (OXI1) [Arabidopsis Thaliana] (GB:Q9LSF1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G13000.1); similar to Os02g0603000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047362.1); similar to Os04g0488700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053154.1); similar to putative viroid symptom modulation protein [Oryza sativa (japonica cultivar-group)] (GB:BAD21495.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.275214829796918 2.310155635226 0.041527535736881 1 1.55330601363134 6.41287659509332 0.275214829796918 0.144035319833904
AT4G14110_at 8.29593502292816 8.22440235782378 8.43666148605013 8.54863024202034 8.82025944568944 8.08791057105093 7.80020489237672 7.71761501568097 6.626798305608 7.01127042930539 6.55273535979351 7.03310483989967 6.96290486847207 7.01106581134838 7.33601203596932 7.16316911339195 7.27845648437562 6.61167892714255 7.1699427541869 0.186568346801562 0.183292603699568 0.193957922810756 0.186005518165583 0.196230862027498 0.188904166905187 0.192135801690399 0.186671271709352 0.219973528132155 0.187090875244275 0.200672526687677 0.184910448151982 0.191335252677174 0.190786535630303 0.189163717536853 0.187610746740326 0.198945108645798 0.188603630371184 0.185012777400057 4 4|0 -|/ 8133050 8134812 8133934.25 8132881 8134915 - gene protein_coding_gene FALSE TRUE AT4G14110.1 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex. Identical to COP9 signalosome complex subunit 8 (CSN complex subunit 8) (Constitutive photomorphogenesis protein 9) (FUSCA protein 7) (FUSCA7) (CSN8) [Arabidopsis Thaliana] (GB:P43255;GB:Q8GWZ4); similar to COP9 (GB:AAA96516.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.26073160717467 2.30997309486279 0.0415408332865219 1 1.55302929245192 15.2062747590772 0.26073160717467 0.129595863143739
AT1G52910_at 2.32166599563777 2.58743557123199 1.81719546176761 1.79863976641861 1.67837605661483 2.13134964860221 1.77920467123898 2.22571527539059 2.58896037492319 2.81459247764387 2.29454724624905 2.97864280025246 1.80410065978274 2.66963712242561 2.64070468753584 2.44444990203328 2.27961857540274 2.91056629457978 2.49380900499744 0.209296158046055 0.196624317336846 0.215845981907191 0.204707552644128 0.196624317336846 0.202676171950378 0.201917007023396 0.196624317336846 0.209867128019442 0.207205127621627 0.206359592126773 0.201094455867832 0.210033467697315 0.2036203014053 0.200928992882229 0.205621244162851 0.207300640168789 0.206911643422544 0.199658667585694 1 1 + 19711809 19712736 19712422.909 19711725 19712991 + gene protein_coding_gene FALSE TRUE AT1G52910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15480.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) -0.250892843256411 -2.30952727950781 0.0415733269480684 1 1.55235348595227 4.61006648763992 -0.250892843256411 0.119336791678647
AT3G08550_at 8.14856999603331 8.3379026178208 8.3103593134616 8.34616910566714 8.21536776773889 7.92805265803987 8.38445641297344 8.23853475421159 7.46861776624622 7.40072027880361 7.85958378755098 8.17188560894885 8.0281623964412 7.91506551172393 7.90168723731739 7.83522484634331 7.71964787269977 8.0498921406222 7.4554776199321 0.139084591982295 0.142274788505100 0.144610761107859 0.139622016545575 0.142695973847268 0.154404468795889 0.150849938532881 0.141541285857340 0.146666822323107 0.15204020301073 0.141339493917902 0.14055626773798 0.141168778802752 0.145599062787683 0.148247671907570 0.141495139827814 0.151351155243430 0.146683970900752 0.151004906796609 3 3|0 +|/ 2598376 2599470 2599113.9 2596434 2599825 + gene protein_coding_gene FALSE TRUE AT3G08550.1 KOB1 (KOBITO) mutant is Dwarfed; Cellulose deficient; Plasma Membrane Protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57200.1); similar to SDL-1 protein [Nicotiana plumba (GB:CAD21166.1); similar to SDL-1 protein [Medicago truncatula] (GB:ABD33320.1) 0.208079859756201 2.30942297909303 0.04158093251877 1 1.55219538327184 15.9270510266766 0.208079859756201 0.0649755820512039
AT2G19170_at 2.78238182600874 2.58946798566341 2.18574715544731 2.07376548427429 2.11806281595817 2.03628370034869 2.22407476510690 2.42643416865574 3.27797832248707 2.4694124341878 4.1990771899586 4.38518972879930 3.54905905420952 3.51489065865351 4.32796607926112 3.41517835004531 2.87714315924935 3.45910943808141 2.98309291739185 0.177897135497920 0.181388659964572 0.181544608128485 0.185217564948796 0.174480095142953 0.176329239997902 0.181812449225480 0.179034837225775 0.187423274213139 0.190285458922937 0.182252194311309 0.187472183052193 0.174812506943639 0.175020418317598 0.199642215821961 0.179109312653412 0.184599134901208 0.181292162267237 0.176414867867924 2 2 - 8321245 8321835 8321523 8321087 8325678 - gene protein_coding_gene FALSE TRUE AT2G19170.1 SLP3 (Subtilisin-like serine protease 3); subtilase Encodes a novel subtilisin-like serine protease. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G30020.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to proteinase TMP [Lycopersicon esculentum] (GB:AAB38743.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); similar to subtilisin-like protease [Arachis hypogaea] (GB:AAY54007.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Protein of unknown function DUF1034; (InterPro:IPR010435); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.201832792620886 2.30936856941991 0.0415849005968435 1 1.55211290771968 5.61758370366849 0.201832792620886 0.0540065861855683
AT1G19830_at 1.05408371178932 0.998240875830153 1.37879725956469 1.08172827152970 1.31039523750340 1.36559918714766 1.04962386745301 1.28881710431783 0.939479859609229 1.37519608004966 1.41765061962838 1.28736448638561 1.28683025776862 1.56963591367736 0.923895871302781 0.871743845472898 1.34930854076693 1.74880357253006 0.908050216322688 0.201639598107204 0.191492511082585 0.195179176107743 0.191492511082585 0.197510874789360 0.191492511082585 0.192208121587551 0.200576360558812 0.203640014463125 0.198678671458676 0.192590072617415 0.191590885219875 0.195491914357022 0.203735326076899 0.195211814396269 0.197302084458997 0.206996272197688 0.197174190300312 0.197939334864924 1 1 + 6852223 6852550 6852399.182 6852146 6852863 + gene protein_coding_gene FALSE TRUE AT1G19830.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G75580.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.209550342768253 2.30911739642375 0.0416032232908354 1 1.55173218026203 2.38148378460969 0.209550342768253 0.0673868031536712
AT4G35830_at 11.2136604135069 11.3241624886989 11.5912987507734 11.6198743085523 11.7820329285697 11.3518133981007 11.6815675384313 11.5379502861726 11.5162729545703 11.6549914976016 11.8571274278625 11.7054893459481 11.8346338532930 12.0013227637469 11.6978483006812 11.8269240698807 11.792802296483 11.9531333700106 11.4580594262752 0.0678877034508172 0.0657229157120543 0.0745912367594484 0.0691890942873355 0.0671464735176584 0.0701750935692978 0.0678529735166781 0.0657229157120543 0.0790675794874181 0.0671721641833078 0.0666950067788379 0.0657229157120543 0.0657229157120543 0.0699209611845127 0.0678794769385032 0.0657229157120543 0.0666785746719772 0.0685385845666135 0.0663236328768306 4 4|0 -|/ 16973053 16974075 16973525.7 16972602 16978061 - gene protein_coding_gene FALSE TRUE AT4G35830.1 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) Identical to Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1) (Aconitase 1) (ACO1) [Arabidopsis Thaliana] (GB:Q42560;GB:Q9SZT1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT2G05710.1); similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:P49608); similar to cytosolic aconitase [Nicotiana tabacum] (GB:AAG28426.1); similar to putative aconitase [Prunus avium] (GB:AAL13084.1); contains InterPro domain Aconitase/homoaconitase; (InterPro:IPR012084); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573); contains InterPro domain Aconitate hydratase 1; (InterPro:IPR006249) 0.218735941901235 2.30898439152862 0.0416129289529837 1 1.55153057633377 23.201179083086 0.218735941901235 0.080937433279818
AT1G28400_at 5.90982558070049 6.20679128697287 3.92641696941819 4.01917174555128 4.63946397465633 5.43561379582025 5.90448214416227 6.09227858673277 4.72078411050715 7.77596257804073 6.96724596625862 7.86995116572216 5.88058867290625 7.42911112720386 8.43973108902967 7.06622637274162 6.67093738332551 7.51445204947519 6.31927769389844 0.251806196456418 0.240614283805924 0.248226362245855 0.249062278488538 0.246511865367074 0.256588873678629 0.242359818252994 0.242327837782798 0.252365674520069 0.241816528806109 0.238000090782626 0.239179409494749 0.242668027637808 0.246756407975387 0.237986554737092 0.238853361076735 0.237311790322584 0.248748036877510 0.245655278854435 1 1 - 9972723 9973291 9972948.909 9972370 9973779 - gene protein_coding_gene FALSE TRUE AT1G28400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33850.1); similar to unknown [Brassica napus] (GB:AAC06020.1) -0.282702713714913 -2.30840128728991 0.0416555051511091 1 1.55064676590689 12.0176498134093 -0.282702713714913 0.151451418821045
AT3G03440_at 2.3815575621541 2.79391309620974 2.77954800789326 2.88772736882444 1.93145881061444 2.25803074162921 1.86043150921014 1.73216963396326 1.87159680778046 1.84943717445186 1.68645947389236 1.98542627902247 2.44156555054409 1.85103653815775 1.86001878112181 2.19396428090005 3.18955808567014 1.81753551911644 2.10045891225192 0.22893343700573 0.228489687287651 0.224450288801280 0.233171059091740 0.220694241571253 0.229650253395865 0.221867223018843 0.223374788004821 0.233592610362252 0.225723963009903 0.226589129803854 0.226355222473932 0.225255770907323 0.221863848202456 0.225794015091463 0.223742753208957 0.221316401688875 0.238686718927802 0.224768712884511 3 3 + 817999 818543 818229.545 815651 818841 + gene protein_coding_gene FALSE TRUE AT3G03440.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G12710.1); similar to plakoglobin/armadillo/beta-catenin-like protein [Oryza sativa] (GB:AAQ13403.1); similar to Os01g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041814.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.229935606957209 2.30836260685948 0.0416583309445514 1 1.55058814018562 4.36245118883627 0.229935606957209 0.0955475209907722
AT3G49710_at 2.57980307644259 2.81701845839002 2.47103729836491 2.48615518942154 2.62669663100679 2.38030970809928 2.59106664126299 2.51277264553308 2.95156107721115 2.97815451395195 3.07203449325715 2.94153622119978 2.49147668162096 2.82317525239027 2.81515993985689 2.77033466160091 2.56540712382453 3.00566050747003 3.33244696956 0.204757193074176 0.210586642207939 0.217410289064703 0.201819623230875 0.205462007359254 0.199751643551508 0.198506482652475 0.201354797974376 0.202169194004219 0.198506482652475 0.20320296235584 0.198718140075591 0.198506482652475 0.198506482652475 0.201521440430362 0.209533572758481 0.205681521911476 0.198506482652475 0.199567734439641 3 3 + 18450409 18450966 18450702.909 18448830 18450995 + gene protein_coding_gene FALSE TRUE AT3G49710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to Os02g0106300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045627.1); similar to Os09g0251500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062682.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52598.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.205452454386254 -2.3080294685824 0.0416826759715732 1 1.55008323265375 5.50710027126195 -0.205452454386254 0.0607754954754705
AT1G64070_at 0.344144290574968 0.522199036575718 0.33565040645255 0.131557099642298 0.0107907475098605 -0.140004186271732 0.274146521766499 0.103629323524851 -0.124306812158448 0.499199079480737 0.116676427577398 0.0541158136311132 0.174197197933004 0.0130164109558614 -0.244124749165919 0.328645491523154 0.145878012777545 0.0280164821770078 0.410879793328332 0.188203699115541 0.196789554354082 0.194260005212371 0.188678465719317 0.191714772698413 0.198180931719196 0.188203699115541 0.188203699115541 0.193127947938616 0.188203699115541 0.192649922306534 0.191235410267810 0.193530752575506 0.193076919783479 0.197587287397084 0.191596422816056 0.193954970325518 0.189272665998041 0.194356177702478 1 1 + 23786528 23787004 23786777.545 23783612 23787112 + gene protein_coding_gene FALSE TRUE AT1G64070.1 RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1); ATP binding / protein binding / transmembrane receptor Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G16870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63880.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.205701330283997 -2.30788262131362 0.0416934116114581 1 1.54986067588508 0.367252483043386 -0.205701330283997 0.0612263383334627
AT1G16080_at 9.02407980973834 9.22607798355084 9.19280981301605 9.33836047000275 9.38730325419248 9.2072996645773 10.2428858119001 10.3600895556938 10.2630039160306 10.2538614137651 10.310864116456 10.2309676742987 10.2135952970581 10.2580220899645 10.3101681540617 10.7128533646598 10.1881562106330 10.3260041737972 10.3636009129681 0.113422821615634 0.108044227152683 0.115190805130416 0.110983773658357 0.109666909270002 0.112024942403413 0.112813363768128 0.105260908481310 0.107990502920325 0.109823945174672 0.103270253259221 0.103080798589752 0.103080798589752 0.107693691233816 0.108438898853591 0.108609499265672 0.107701218947174 0.105028588700262 0.107218433641960 1 1|0 +|/ 5514991 5515713 5515312.8 5514311 5516021 + gene protein_coding_gene FALSE TRUE AT1G16080.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54676.1); similar to Os08g0266300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061403.1) -0.203249926122711 -2.30780083758923 0.0416993917733209 1 1.54973672891391 19.803522111686 -0.203249926122711 0.0569048011845186
AT3G45610_at 2.69991750984833 2.45925639046923 2.33230736354511 2.06925388994346 1.82190125834314 2.19563226470196 2.31395744169353 2.22286647328621 3.09616989727530 2.72705184545461 2.46466591728451 2.57128000290941 1.94892149888522 2.62042005354704 2.91216350136042 2.58860289609786 2.58768122763576 2.64015032819535 2.20055970930078 0.169037766644823 0.172027895351331 0.168803230223820 0.167648740458626 0.170923946849121 0.165324652512537 0.170330552177996 0.173231924706408 0.169714732913789 0.173105506584983 0.174305905767565 0.168231038803391 0.168642246580346 0.165434149398718 0.165560698853800 0.170808931119267 0.170888564970688 0.172853004991935 0.170163375617366 3 3 - 16750620 16750985 16750826.818 16750274 16751430 - gene protein_coding_gene FALSE TRUE AT3G45610.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF3.2 (AtDOF3.2) (DOF3.2) [Arabidopsis Thaliana] (GB:Q9M1E6;GB:Q9SUJ4); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G60200.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE81562.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.226041949397509 -2.30768428080482 0.041707916029189 1 1.54956008386353 4.87255132177038 -0.226041949397509 0.09076504037629
AT3G26900_at 8.85051589917548 9.02016109373115 8.95885828312282 8.91701328017729 9.08748465718194 8.8175604810395 9.3645869773134 9.33386348658258 9.60714355582825 9.4184561473751 9.28791729327423 9.2765095463921 9.34803955018773 9.27694696664232 9.35897854119167 9.394959927452 9.26311465617383 9.3943615435479 9.5745110528840 0.1129560211956 0.107260119333264 0.109902762030893 0.116101667680657 0.116558800390030 0.111327997733551 0.113629757625217 0.111768995535035 0.114719849758848 0.116696782843921 0.109069807333126 0.107292390504434 0.108296133125215 0.11586138639623 0.112335407159072 0.106374570177316 0.11729167420009 0.109004540357027 0.110830526618366 3 3|0 -|/ 9913554 9915069 9914357 9913449 9915715 - gene protein_coding_gene FALSE TRUE AT3G26900.1 shikimate kinase family protein similar to ATP binding / shikimate kinase [Arabidopsis thaliana] (TAIR:AT2G21940.5); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45509.1); similar to Os01g0102600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041750.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) -0.202659718870827 -2.30731816376151 0.0417347025425516 1 1.54900523921725 18.4729923973589 -0.202659718870827 0.0558978592232806
AT2G05950_at 1.57813365028362 1.91920777645435 1.87601092288418 1.88407479370998 1.81871560574743 1.43326141655102 1.77980444447689 1.50773317587471 1.94834174451673 2.31735576766926 1.99398641442628 1.30275021331285 1.76079062037876 1.95322846340448 1.88534403866135 1.52383389482057 1.18582059087581 1.84718707582115 2.35393526709101 0.195211974933298 0.195352512452373 0.19715605054252 0.199891538866325 0.207559498038966 0.19865365661821 0.195211974933298 0.199460522303695 0.197093057207108 0.209356952551633 0.200300147465326 0.207037914339402 0.205810707592099 0.200178184125311 0.198538270188441 0.198922845985074 0.195211974933298 0.195211974933298 0.211322612599865 2 2|0 +|/ 2297815 2298643 2298174.5 2297813 2298718 + gene protein_coding_gene FALSE TRUE AT2G05950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32050.1); similar to transposon-like ORF [Brassica rapa] (GB:BAA85462.1) -0.234065336422792 -2.30652424905978 0.0417928453816793 1 1.54780215696163 3.6686986851086 -0.234065336422792 0.100757991390085
AT2G19410_at 0.781239514087544 0.734178474230961 1.02622787728051 0.71084599116386 0.834909237467299 0.708860681406479 1.18138642165047 1.12667693907640 1.46408446093858 1.20819742710837 1.21284894444468 0.521084767435258 0.657733494037354 1.02968658281826 0.698777317434464 0.677321868485207 1.32632589858178 0.847266921419035 0.76441328712543 0.213867245029874 0.222818422914114 0.229517065476505 0.215432904732150 0.219950567069508 0.218272782014468 0.213867245029874 0.224077296064141 0.222313681982778 0.230258076221266 0.219195704612312 0.216755985364762 0.217942746379293 0.221503797343064 0.215559612592673 0.220415021284633 0.223711976698228 0.216892384889965 0.227984580276488 2 2 - 8411987 8412652 8412368.182 8411983 8416094 - gene protein_coding_gene FALSE TRUE AT2G19410.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G57035.1); similar to Protein kinase; UspA [Medicago truncatula] (GB:ABE79207.1); similar to Os06g0574200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057924.1); similar to Os02g0218600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046306.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain U box; (InterPro:IPR003613) -0.204921862245297 -2.30651838646428 0.0417932750230167 1 1.54779327332626 1.89651353340684 -0.204921862245297 0.0600880685607621
AT3G13790_at 9.64492844538274 9.84213430719361 9.21551255845267 9.29692434283981 8.79941609073648 8.46546926428824 2.50525400925219 2.79025295004329 7.56949946679285 6.09481070384541 4.63967823058605 6.78510384214473 2.75331681472456 4.03173287983233 3.865151898668 2.49706655869046 2.60297821436013 3.53998461685845 4.77329196347624 0.217588189783418 0.215688551058277 0.216469429609971 0.215688551058277 0.217032560082012 0.225301739282107 0.216157085297242 0.222839750461608 0.244346321316968 0.226749878473695 0.218833241859597 0.217465488350827 0.219920377269668 0.216425203120694 0.215688551058277 0.225139191850045 0.217986326019609 0.22643950151022 0.216510803225135 3 3|0 -|/ 4533094 4534143 4533642.625 4532918 4535874 - gene protein_coding_gene FALSE TRUE AT3G13790.1 ATBFRUCT1/ATCWINV1 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 1); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein with invertase activity. similar to ATCWINV5 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 5), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G13784.1); similar to ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5), hydrolase, hydrolyzing O-glycosyl compounds / levanase [Arabidopsis thaliana] (TAIR:AT1G55120.1); similar to cell wall invertase precursor [Fragaria x ananassa] (GB:AAD10960.1); similar to cell wall apoplastic invertase [Vitis vinifera] (GB:AAT09980.1); similar to Sialidase [Medicago truncatula] (GB:ABD28503.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) 0.221098695028131 2.30647236574689 0.0417966478073369 1 1.54772353800031 12.5626085010343 0.221098695028131 0.0844717572029215
AT4G25120_at 1.74830059258203 1.66943680961645 1.66135106282045 2.01338645669891 1.45291033843419 1.74065800838488 1.30509264633671 1.62067998479445 1.87766431424188 1.59355597989784 2.37682568742505 2.02207620667200 2.12100813669069 1.90263301711136 2.06059996741501 2.34457272835365 1.78343523018558 2.52438171449526 1.96388337817754 0.187051931936277 0.190578334158264 0.189910266616737 0.190337489202785 0.18582883316623 0.187357320618180 0.188671864770929 0.185649965493355 0.192851479124263 0.193612459246903 0.188556182678770 0.188557139595578 0.195461793255254 0.193236347048794 0.190495883335586 0.192364537152833 0.199668437323277 0.187596127662729 0.190756230013027 4 4|0 +|/ 12896302 12897582 12897076.111 12890704 12898511 + gene protein_coding_gene FALSE TRUE AT4G25120.1 UvrD/REP helicase family protein similar to Os07g0492100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059683.1); similar to ATP-dependent DNA helicase PcrA [Clostridium sp. OhILAs] (GB:ZP_01362558.1); contains InterPro domain UvrD/REP helicase; (InterPro:IPR000212) 0.230719660095008 2.30639942667229 0.0418019939325814 1 1.54761301399337 3.62829839253317 0.230719660095008 0.0967470768626373
AT1G58150_at 3.23601832163501 2.90232298954737 3.24292661060371 2.88947157169726 2.75011444078416 3.09830008566987 3.82490887939763 3.65278157518774 3.48510780107603 3.8107130486901 3.65899622549651 3.42794095557287 3.22009261057652 3.56364579104739 3.57514586828334 3.68144469319428 4.10358775444965 3.52041280806998 3.69875239061235 0.164902920122090 0.163398233217221 0.161891594275685 0.166996614748649 0.164617646198458 0.162962000282691 0.162276754048390 0.168445776754714 0.164151803817169 0.16592321760522 0.168991500185615 0.163082582206463 0.161787383022340 0.162842959645850 0.163104117492768 0.164327502999014 0.172247368667539 0.166172425308751 0.166782157375610 1 1|0 +|/ 21533768 21534093 21533949.2 21533768 21534123 + gene protein_coding_gene FALSE TRUE AT1G58150.1 unknown protein -0.239877086354847 -2.30520944856693 0.0418893075057416 1 1.54580998532488 6.82898860187991 -0.239877086354847 0.107676176499618
AT4G17130_at 1.75352684066155 1.93313571621899 2.55303482464913 2.67685692360004 2.41317735763297 2.12220990717548 1.73304609486353 1.86960802062831 1.77507947601961 2.23791205344414 1.43409757526382 1.81067721907838 2.13352661493464 1.68770058374681 1.90327144342894 1.98142278917819 2.48102308894676 2.66282708490404 2.62509645962087 0.189843807931532 0.188975782878945 0.189925443556702 0.189881229838508 0.192919798228537 0.196958051263254 0.189256327545378 0.188975782878945 0.192201050441328 0.191724105610021 0.195463835312913 0.190261247636958 0.188975782878945 0.188975782878945 0.188975782878945 0.191661883491746 0.201359209334448 0.201151565896176 0.190849232476742 4 4 - 9624329 9624908 9624545.636 9624275 9627621 - gene protein_coding_gene FALSE TRUE AT4G17130.1 similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48090.2); similar to vacuolar protein sorting 13C protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19476.1) 0.209056444372483 2.30479488049116 0.041919767361486 1 1.54518190106574 4.24408160882712 0.209056444372483 0.0672251055100621
AT1G78940_at 0.699923675520638 0.578023621792872 0.993088137655935 0.742424075627738 0.89325402562789 1.07120306840663 0.947788963417517 0.563304258573114 0.363348342380982 0.309747781795971 0.837933972902413 0.58322579861755 0.855962100801578 0.423524975640693 0.753809509700213 0.682205064420031 0.74918527012971 0.130248577438083 0.550784709250375 0.192759899987036 0.191337314667920 0.195820646859693 0.190149617115896 0.187543014022884 0.194460085316726 0.191288896043226 0.187543014022884 0.199988862498922 0.190335927303873 0.188728508793809 0.192158888106365 0.192044579824124 0.189941252606973 0.196885875792500 0.196995914950132 0.192904726670775 0.200360591582356 0.190251239787209 1 1 - 29685955 29686461 29686185.091 29685750 29688855 - gene protein_coding_gene FALSE TRUE AT1G78940.1 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT2G24370.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16760.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20200.1); similar to serine threonine kinase [Zea mays] (GB:AAL59227.1); similar to stk [Zea mays] (GB:AAV64214.1); similar to serine threonine kinase 1 [Zea mays] (GB:AAK73111.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.223391913950344 2.30441907255811 0.0419473978243878 1 1.54461256660131 1.32861232158549 0.223391913950344 0.0877621685462539
AT1G07020_at 6.04485858972923 6.05764346638139 5.57178253114238 5.21724919005635 5.79201415821824 5.6374743157351 4.36355635531621 4.60150183820021 5.37936331486025 5.02468873006204 5.64591997759189 5.45483681986236 4.88515142215904 5.80005058222991 5.85580677860168 4.86912150017455 4.54499518733709 5.40407923571151 5.08196152301249 0.227303517574247 0.226347796752425 0.237807941886714 0.231892566781914 0.239090642896363 0.231823932380491 0.226347796752425 0.227894756360552 0.24659308877883 0.226347796752425 0.226347796752425 0.226441716434662 0.226347796752425 0.234597814001071 0.232434428607071 0.229692855584582 0.235567673232115 0.231796586488724 0.229627843814677 1 1 - 2155367 2155726 2155566.909 2155212 2156007 - gene protein_coding_gene FALSE TRUE AT1G07020.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45080.1) 0.216615325847419 2.30416866122332 0.0419658185247113 1 1.54423321734027 10.6455099108991 0.216615325847419 0.078612918481733
AT4G12230_at 8.01357815436018 7.72467682481272 7.78632804142158 7.86633276983888 8.37463772797857 8.11208211036706 8.0477342771678 8.03999622983334 7.82790801990864 7.48239483779598 8.01502687659653 7.8437504946109 8.06258175387152 8.04410729046469 7.88042566993984 7.97868003220485 8.05140511764853 7.73911890242723 7.51988987102743 0.139423565202791 0.136379173488966 0.140121579441899 0.137566579002742 0.141219700186143 0.152348914230815 0.146928115828260 0.136677835375053 0.146961016304998 0.141029843558845 0.136234573814047 0.133229524665268 0.133229524665268 0.137351999265228 0.139748914393933 0.133229524665268 0.137624699558524 0.142080969240368 0.137540056106744 4 4|0 +|/ 7286394 7287181 7286886.8 7284513 7287536 + gene protein_coding_gene FALSE TRUE AT4G12230.1 esterase/lipase/thioesterase family protein similar to Os10g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064230.1); similar to esterase/lipase/thioesterase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB46874.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.210085782583922 2.30390944239544 0.0419848953375656 1 1.54384053754891 15.7766463970381 0.210085782583922 0.068974835797465
AT1G32310_at 5.78708383802538 6.40668601125215 5.76476818057556 6.32375852717465 6.8927902532136 6.37072846065488 6.12925574519333 6.39011999465432 5.45094165669136 5.57133677737797 6.18174084008795 6.15024397643927 5.98548408418311 6.40376475174338 5.20975779461193 6.08489911550746 6.40436644771114 5.81910502691762 5.69327028499846 0.241118817454237 0.241264571896668 0.245683971118419 0.240922764705826 0.2454638807085 0.260318425553614 0.242028975485338 0.241344711747171 0.257606867052802 0.24752063312564 0.251101178466576 0.250276850017938 0.249161722668425 0.248693464056292 0.261890378928657 0.241656151036199 0.248363621866110 0.244779373999158 0.245318473863034 1 1|0 +|/ 11653611 11654494 11653926 11653544 11654774 + gene protein_coding_gene FALSE TRUE AT1G32310.1 similar to unknown protein [Oryza sativa] (GB:AAL67597.1) 0.308897819875509 2.30352199701517 0.0420134243799936 1 1.54325363543630 12.0590337901794 0.308897819875509 0.176225034611732
AT1G48730_at 1.36995687423158 1.66606545178088 1.24925575183692 2.02163072892530 1.45176784787809 1.68934539114733 1.44633208791347 1.21308730045698 0.708329729126114 1.23861617118651 1.39900587762562 1.35314614219506 1.08925393084814 1.35469353706779 1.63616118019635 1.24336263364775 1.67819238605908 1.31208973018676 1.02962030588457 0.214869557794067 0.218348164772090 0.208910533701549 0.213126509839353 0.214488970016862 0.217109696354519 0.219178154486073 0.217956534865384 0.229577254189566 0.218925779983086 0.215471669476125 0.211292272469066 0.215458832257565 0.21187429607119 0.232039538531173 0.208910533701549 0.218215351081136 0.218777407512537 0.216784678565017 1 1|0 -|/ 18024026 18025921 18025193.125 18024005 18025945 - gene protein_coding_gene FALSE TRUE AT1G48730.1 unknown protein 0.285094471590217 2.30339726993747 0.0420226124752355 1 1.5430647047067 2.70114363558501 0.285094471590217 0.154309032557135
AT1G13190_at 7.24074282905582 7.02715907878003 7.23597672897254 7.2704544071118 7.2550913032226 7.19774642081037 6.40720765997026 6.50561925609831 7.0815860422524 6.91510414965465 6.27630372257273 6.60279708953487 6.85757482247067 7.04366572889536 6.99102834523386 7.1383088643591 7.39920345382135 6.8270671061961 6.83864633812635 0.158771759960107 0.164873955053707 0.165501771830277 0.159516880823978 0.161389499560961 0.168617081291014 0.166266168400561 0.168212776644026 0.164062019297945 0.159764081960352 0.162771698428792 0.162558732594021 0.162288769361922 0.163767450539602 0.162672947588127 0.158720269402561 0.163355335817055 0.160257909341495 0.169823567549825 1 1 + 4500753 4501115 4500877.182 4498878 4501610 + gene protein_coding_gene FALSE TRUE AT1G13190.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55670.1); similar to Os08g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062111.1); similar to Os09g0476100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063463.1); similar to hypothetical protein DDBDRAFT_0205004 [Dictyostelium discoideum AX4] (GB:XP_639372.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.195758237005465 2.30316233117579 0.0420399246434083 1 1.54270883816043 13.9360526196594 0.195758237005465 0.042311779115151
AT2G07360_at 6.68936447000495 7.11466543766454 7.00522534445548 7.26812518843991 7.59555913070592 7.14114450294864 7.04621250773017 7.13621402598392 6.2921810730217 6.40504363548582 6.55510902027739 6.48641695925651 6.48850974805177 6.56293840315095 6.35599578161095 6.72518893278712 6.37709749078559 6.74573172023912 6.18915091550462 0.169735782137808 0.168320463908569 0.170390771536901 0.170362757652502 0.167939324482073 0.177708438303823 0.172968511343302 0.169479436336696 0.179728808582358 0.171278434121572 0.169117144486092 0.169622746181619 0.165632267070472 0.169774397984073 0.169186489006157 0.166319030824339 0.167681117884611 0.169387194478101 0.172912832686288 2 2|0 -|/ 3047625 3052453 3050363.765 3047303 3057180 - gene protein_coding_gene FALSE TRUE AT2G07360.1 SH3 domain-containing protein similar to SH3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95139.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06840.1); similar to SH3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95138.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Src homology-3; (InterPro:IPR001452) 0.248782198487071 2.30187924091419 0.0421345944182737 1 1.54076549220476 13.5408548501703 0.248782198487071 0.117955532483273
AT3G50870_at 1.35381431076061 1.26287136690996 1.44625261354974 1.54936912413609 1.36225306459852 1.22252430388454 1.36384478078852 1.41089384061513 1.83472459601938 1.55144691521258 2.31093499030894 1.76717776445814 2.34808652430565 1.90725008593327 2.23161000052781 1.74236892881842 2.15662269167596 1.96714656907858 1.76073613232222 0.216704551725061 0.211775907147163 0.221383933896155 0.215161061007190 0.220800344737333 0.219990245933341 0.214302812467306 0.210346072569964 0.215403608145549 0.219030387348929 0.210346072569964 0.21271273701247 0.214431278035124 0.215059006987970 0.213554091126471 0.217960433876164 0.21566585157318 0.215339693475182 0.216948806982955 3 3|0 +|/ 18922444 18923254 18922921.9 18921971 18923589 + gene protein_coding_gene FALSE TRUE AT3G50870.1 MNP (MONOPOLE); transcription factor mutant has Embryo defect; GATA Factor Transcriptional Regulator Identical to GATA transcription factor 19 [Arabidopsis Thaliana] (GB:Q8LC79;GB:Q9SVL2); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT4G36620.1); similar to Os05g0578900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056415.1); similar to GATA-type zinc finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91742.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.192753757488644 2.30162626077334 0.0421532842040381 1 1.54038236830297 3.25624571344193 0.192753757488644 0.0348873113544033
AT1G24100_at 9.75793946389166 10.0620136293572 9.92015760833473 9.97707896667902 10.1393045469578 9.65132606704025 10.1816920478612 10.1085306742718 8.61317074895462 9.83770124547852 9.98726177905613 9.83680310892686 9.86517883160976 9.92454977456393 9.46453348293059 9.9305696925559 9.71037449477958 9.90655697511003 9.31609896187067 0.112225632395699 0.109867809422845 0.111524940391600 0.11142895459556 0.109253713654924 0.115619020140820 0.112921092317773 0.108769868121457 0.136380962467398 0.108769868121457 0.108769868121457 0.112758288224527 0.108769868121457 0.113854465016936 0.115423557417447 0.108804912258346 0.112741236511223 0.115191659299419 0.114769567376947 1 1 - 8525565 8526096 8525928.909 8525424 8527076 - gene protein_coding_gene FALSE TRUE AT1G24100.1 UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G43840.1); similar to thiohydroximate S-glucosyltransferase [Brassica napus] (GB:AAL09350.1); similar to thiohydroximate S-glucosyltransferase [Brassica rapa subsp. pekinensis] (GB:AAZ15016.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.233497187707239 2.30070126747981 0.0422216893634188 1 1.53898161839547 19.5166981269873 0.233497187707239 0.100785099212741
AT1G65420_at 5.07024781323508 5.92330985392408 5.21775085391516 5.3509844606047 5.53428717182709 6.24312084732344 5.47722571677815 5.90372570132411 4.96412288715703 5.25330015205912 6.22574337052076 5.76505431685949 5.74763237937151 5.37998087454576 6.13412351567383 5.70502840738603 5.58059320125859 5.58426870162873 4.99558399738991 0.239290530882063 0.24542295825579 0.232756216308089 0.239068722611486 0.230146781917572 0.229984859271991 0.229647162880291 0.229647162880291 0.250868940176792 0.235973012752910 0.230817444740547 0.236203638631992 0.239145742172730 0.241829763983097 0.233779449311944 0.229727979532725 0.242724935392987 0.245174666484746 0.232054710736250 1 1 - 24301354 24301991 24301638.818 24301148 24302233 - gene protein_coding_gene FALSE TRUE AT1G65420.1 Identical to Ycf20-like protein [Arabidopsis Thaliana] (GB:O80813); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56830.3); similar to Protein of unknown function DUF565 [Medicago truncatula] (GB:ABE93092.1); contains InterPro domain Protein of unknown function DUF565; (InterPro:IPR007572) 0.343604656236238 2.30058141912688 0.0422305602240366 1 1.53880013924135 11.0082342730869 0.343604656236238 0.206929780881657
AT2G41340_at 1.06738306983817 1.0750027251452 0.827981217303061 0.683875613213684 0.512924461423416 0.721420893704099 0.901456282622087 0.83048437681235 0.807446590483403 0.691429597878835 0.606222948714367 0.736274170669792 0.336295944301425 0.426753875672145 1.04221916790831 0.739769241461641 1.04708676706167 0.735369788769912 0.96293600199786 0.198669363246642 0.205926210069625 0.200486403206302 0.199304958611611 0.198669363246642 0.211220464638911 0.201952967259842 0.198879058543305 0.207131044557587 0.201187428181603 0.202836063879048 0.199203907722686 0.214010963038559 0.198669363246642 0.203881222185685 0.199494676311494 0.198669363246642 0.20946678893014 0.203504591641041 2 2 + 17236171 17237495 17236641.364 17236086 17237560 + gene protein_coding_gene FALSE TRUE AT2G41340.1 eukaryotic rpb5 RNA polymerase subunit family protein similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT3G57080.1); similar to RPB5d [Brassica napus] (GB:AAF81222.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain RNA polymerase Rpb5, N-terminal; (InterPro:IPR005571) -0.196943071288422 -2.30041937083169 0.0422425574710782 1 1.53855476342349 1.59224260576940 -0.196943071288422 0.0455670570022655
AT1G69990_at 1.47351291509813 1.53556930632716 1.66695011261633 1.40889814152909 0.993415408039005 1.45204216088757 1.73726702414167 1.85517527110008 1.72903513914414 2.1685332713439 1.67697186456947 1.49576760469608 1.83942131587805 1.59791498981884 0.99129820076202 1.39773670926825 1.51738661503061 2.2032905622445 1.42925782574276 0.196343074160023 0.199606658137144 0.198990096578269 0.204986302928371 0.195430445275542 0.195956354398108 0.195790442183431 0.202687308422224 0.208331244432355 0.204101975414845 0.200719556705375 0.197942549974126 0.199153410111697 0.199432825842784 0.197168400376049 0.202213893429347 0.19987392609234 0.195753614605547 0.203836706829630 1 1 - 26363915 26364473 26364195.182 26363898 26365673 - gene protein_coding_gene FALSE TRUE AT1G69990.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G27190.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78632.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.227844968012776 -2.3003740362945 0.0422459144021468 1 1.53848611808551 3.19814490656425 -0.227844968012776 0.0939421737158108
AT1G54115_at 8.31016563015186 8.86218695492146 8.77358153436541 8.87973609254738 9.06051063896986 8.58180534035218 8.29452993972097 8.36420936191712 7.17870409078334 7.89222676859872 7.88972072403064 7.56821600267315 8.28634082155332 7.60770416779647 8.01166207617831 8.13780722626992 7.81598393926702 7.98360902832906 8.21529974318168 0.179769934563369 0.177087960182979 0.183350479712304 0.183585554028677 0.176360956458773 0.183747829468031 0.177358939002196 0.18507614276366 0.212575280491303 0.177080822266262 0.194845862060640 0.175330958195546 0.182120224658672 0.192073341901250 0.181207835161805 0.178646310369154 0.18927902707809 0.189599971995513 0.181645221987141 1 1 + 20207151 20207633 20207395.909 20205786 20207845 + gene protein_coding_gene FALSE TRUE AT1G54115.1 cation exchanger, putative similar to CAX9 (CATION EXCHANGER 9), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G14070.1); similar to Sodium/calcium exchanger membrane re (GB:ABE92415.1); similar to Os03g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049159.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) 0.258344530310921 2.29957985091298 0.0423047639622285 1 1.53728362733706 16.4781943695100 0.258344530310921 0.128341977427621
AT1G20860_at 1.42288863612936 1.33883679291811 1.32842655198008 1.56410289878857 1.30394690156097 0.813113429685415 1.69384159490651 1.19200571049424 1.99552206513183 1.88099624275690 1.19498669724476 1.33395341201519 1.51949689550412 1.15750210550049 1.16399303825999 1.60199528006772 1.96422023533102 2.15329543313472 1.73211771475382 0.199048347077158 0.208256200060869 0.204561593165827 0.202350966749042 0.199262247346187 0.205002977200746 0.203123483245992 0.200380512182726 0.200844967733843 0.199729560898732 0.207182667913018 0.211021009835718 0.200352199531493 0.199827135995425 0.221558467021908 0.202338614421809 0.207012522714919 0.199048347077158 0.201816330436072 1 1 - 7254003 7254553 7254292.455 7253996 7258666 - gene protein_coding_gene FALSE TRUE AT1G20860.1 phosphate transporter family protein Identical to Inorganic phosphate transporter 1-8 (AtPht1;8) (H(+)/Pi cotransporter) (PHT1-8) [Arabidopsis Thaliana] (GB:Q9SYQ1); similar to phosphate transporter family protein [Arabidopsis thaliana] (TAIR:AT1G76430.1); similar to putative phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD33230.1); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.258930345928449 -2.29943076082012 0.0423158204249026 1 1.53705790013551 3.02250817856446 -0.258930345928449 0.128965184811384
AT1G78840_at 0.0891617898369496 -0.148948117395057 0.164713294774815 0.301957121015633 0.00812673296794619 -0.23567406405568 0.00410462700736443 0.0114197163807948 0.724623475132343 0.144891240885520 -0.555124226569686 0.0192441228142582 0.157789591541622 -0.234647650150973 -0.272116131311170 -0.086857163570884 -0.303594851743713 0.134617078337524 0.153064353188926 0.190409865015753 0.196083993029852 0.190409865015753 0.198852440738703 0.192024460988606 0.203483077266455 0.193452620772394 0.192295385974189 0.196514071506368 0.192628949840733 0.194040575670994 0.197346932110100 0.195411285656309 0.198742683860998 0.193331712145768 0.19400746346788 0.190409865015753 0.205397864747064 0.198487791787508 1 1|0 -|/ 29644184 29644930 29644481.4 29644183 29645710 - gene protein_coding_gene FALSE TRUE AT1G78840.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G22670.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE78252.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.206299788174529 -2.29895677755353 0.0423509893462614 1 1.53634030123801 0.123494405518580 -0.206299788174529 0.0635901212445286
AT1G67930_at 6.25258092192404 6.64865885198478 5.68580208878007 6.09399099108403 6.1633548843159 6.31924397336172 6.80225290617685 6.9227014021483 6.59250759995428 6.42626944918943 6.91546255295195 7.06145232023965 6.13096597098297 6.4368563440859 7.05625048745122 6.47767187484983 5.60041844709446 6.58155617123883 6.22321625138827 0.236259544489008 0.236853111775132 0.245345725427621 0.240661937471716 0.236903202351415 0.246656204754817 0.230205154814382 0.233613079743870 0.253497733535955 0.247560346540262 0.237269119462092 0.229457345682703 0.233466532307874 0.235898297329481 0.244585379323617 0.233203824291324 0.260887502183706 0.2370372640572 0.252765290183617 1 1 - 25477917 25478433 25478248 25477803 25481086 - gene protein_coding_gene FALSE TRUE AT1G67930.1 Golgi transport complex protein-related similar to Os05g0378900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055390.1); similar to component of oligomeric gol (GB:NP_006339.2); contains InterPro domain Steroid nuclear receptor, ligand-binding; (InterPro:IPR008946) -0.236184515952602 -2.29893822635353 0.0423523663931966 1 1.53631221601847 12.8343617714499 -0.236184515952602 0.104164699333159
AT3G03210_at 5.5915656335851 5.77518811878068 5.80543090575894 5.84739103513123 5.03368326968987 5.53562273041549 5.43554722703631 5.6001002725414 5.5972786390005 5.40352900179226 4.76237063622325 5.11961374054463 5.32781427312856 5.15245253804885 5.15810412670724 5.1492272192598 5.34169671158585 5.13415019173801 5.67433469922466 0.229070751375936 0.219573538952542 0.227267366133165 0.228698313255745 0.221228820821990 0.227358638334335 0.219363897443229 0.226185679767388 0.223547139060328 0.221208132408847 0.219363897443229 0.219363897443229 0.219363897443229 0.225728293759401 0.224745361657864 0.222099692258058 0.225296753790412 0.227848651950082 0.224320852188563 3 3 + 741570 742050 741900.818 740777 742316 + gene protein_coding_gene FALSE TRUE AT3G03210.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83277.1) -0.230135214044135 -2.29808532453716 0.0424157235270068 1 1.53502105042640 10.9288458789475 -0.230135214044135 0.0970493882035973
AT4G07450_at 5.53080483720499 5.48067895165863 5.23217363694501 6.75521874247182 3.67001167410124 4.0674337892231 3.97744060985733 5.90367109171015 5.3940731764832 6.55583604817527 5.73064687488379 5.13229616356386 5.23825829681531 5.73685750974438 4.65733915745738 4.95212739245684 5.2720549856252 5.51238370685959 6.77971729866586 0.474606844043177 0.474606844043177 0.474606844043177 0.483040559257923 0.479110402606577 0.497885915590896 0.474606844043177 0.474606844043177 0.522165707979166 0.474606844043177 0.474606844043177 0.502748324711165 0.474606844043177 0.479802693365039 0.474606844043177 0.513304651261462 0.474606844043177 0.474606844043177 0.474606844043177 4 4 - 4229158 4229724 4229394.667 4229152 4231217 - gene protein_coding_gene FALSE TRUE AT4G07450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05890.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.628076371052396 -2.2977355278534 0.0424417343052263 1 1.53449154922863 10.8382813426635 -0.628076371052396 0.430571939322292
AT3G04710_at 3.30191359217136 3.45530352695302 3.15733699824485 3.05747019484491 3.10196875499370 3.07365774900665 2.74025946480425 3.36746410728617 2.53898280519225 2.96638890035297 2.4539465217759 2.57363232480843 2.72711043117478 2.24814939605531 2.71175899308571 2.55532424908512 2.55899153878285 2.11401574986597 3.08120435098272 0.213159205151208 0.211305250990739 0.219147782176701 0.221318883991739 0.214365374174204 0.220279102799379 0.216375393850729 0.212903631785617 0.217394014241124 0.212898864018735 0.212843568245786 0.213668301120595 0.223823994800979 0.219947726762983 0.217107653216512 0.214303595117081 0.224694475497983 0.217890665363271 0.217308157208445 3 3|0 +|/ 1279957 1280723 1280354.286 1278085 1281124 + gene protein_coding_gene FALSE TRUE AT3G04710.1|AT3G04710.2 ankyrin repeat family protein|binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G12400.2); similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to unknown [Nicotiana benthamiana] (GB:AAQ63971.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.243976308397281 -2.29772232444731 0.042442716407667 1 1.53447156314590 5.83445088324907 -0.243976308397281 0.113174181435399
AT4G12410_at 2.58052400187592 2.28540597047324 2.88476171736882 2.75757981094246 2.49267803953022 2.89744686857268 2.73327050905741 2.82133755948554 2.69758364432568 2.52972814399844 3.04667333724953 2.98232855457298 2.7392396972541 2.82309954770705 3.11037971603054 2.94199330707250 3.1934972829416 3.09817014871764 2.85758395851533 0.188857590449424 0.183161983800385 0.184992866161674 0.183506035005428 0.178772179130412 0.182533403801574 0.178772179130412 0.185294388669673 0.191428031066161 0.190439191916127 0.191963126040127 0.189567130929616 0.201263528283995 0.185627184949470 0.182658214003568 0.183534258258138 0.185893428503035 0.186971955276546 0.191669863560988 4 4 - 7342979 7343300 7343123.455 7342953 7343587 - gene protein_coding_gene FALSE TRUE AT4G12410.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G22620.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); similar to Os04g0537100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053425.1); similar to OSJNBa0091D06.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03018.3); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.224969774438639 2.29703333976841 0.0424939952208129 1 1.53342868693662 5.52506953360815 0.224969774438639 0.0907281058779741
AT1G78420_at 8.03308897052035 7.9210256912416 8.39013613164244 8.35100287804218 8.61048759350698 8.7742943946546 7.50677063438098 7.72721588423719 6.96753569422255 7.31132936150784 6.54948997638891 6.46843651733471 6.75617451732607 6.95379992733998 6.69863853150562 7.0020640710333 7.04578445422974 6.52408728893442 6.97633342759004 0.202723681412126 0.208626700263459 0.209082042876796 0.209810080466893 0.203648654266377 0.212972803489802 0.202723681412126 0.203423592751722 0.207480249766881 0.211760212879307 0.207946082623101 0.203931204275545 0.212435591413863 0.211908957711301 0.202723681412126 0.202723681412126 0.212658556830975 0.206528030666122 0.205877192892411 1 0|1 /|+ 29511706 29512120 29511885.1 29509426 29512379 + gene protein_coding_gene FALSE TRUE AT1G78420.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17145.1); similar to hypothetical protein DDBDRAFT_0205514 [Dictyostelium discoideum AX4] (GB:XP_642422.1); similar to Os02g0244100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046414.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.199599101885650 2.29688207542324 0.0425052613089188 1 1.53319973853707 15.0816905580875 0.199599101885650 0.0517772978889096
AT2G40430_at 7.95012337961812 8.03192089961927 7.88049904313452 7.63387258072029 8.14303648822615 7.488045574275 8.35245847581823 7.91490340611144 6.93599923956811 7.71893302200454 6.72762423373046 7.50094205502917 7.096174184768 7.02842389278856 7.72048265662461 7.16445185825889 7.36171163055955 7.09763976864161 7.79185082232897 0.162358333296449 0.160068341337207 0.1529444197707 0.156691340350305 0.153889947777556 0.159960491311221 0.157881245533927 0.167198837660269 0.156640906960392 0.156456043421898 0.156290381128266 0.151587609652175 0.164974148141630 0.160652108106092 0.159017376853447 0.153178966679757 0.160256272300905 0.154708035588678 0.1565250054799 2 2|0 -|/ 16886647 16887825 16887124.429 16886294 16889505 - gene protein_coding_gene FALSE TRUE AT2G40430.1|AT2G40430.2 Identical to Protein At2g40430 [Arabidopsis Thaliana] (GB:O22892;GB:Q93XZ8); similar to Os05g0144200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054623.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90201.1); contains InterPro domain P60-like; (InterPro:IPR011687); contains InterPro domain Tumor suppressor protein Gltscr2; (InterPro:IPR011211)|Identical to Protein At2g40430 [Arabidopsis Thaliana] (GB:O22892;GB:Q93XZ8); similar to Os05g0144200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054623.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90201.1); contains InterPro domain P60-like; (InterPro:IPR011687) -0.273033930809939 -2.29609094844087 0.0425642309427106 1 1.53200238510937 15.2715786374490 -0.273033930809939 0.143539740252542
AT3G10390_at 2.15140943263601 2.45850686401742 2.49128975565820 2.31096886654787 2.77462690465915 2.60256487908566 2.65470871190020 2.22530775591486 2.22931997697985 1.97216121524592 2.24247025853381 2.46744172596722 2.37207578800832 2.33416864342343 2.500787726286 2.36875238875286 2.717531852107 2.11159413034692 2.08495779576095 0.215701846784493 0.211552603495251 0.21263499462761 0.216828715147011 0.211898227970009 0.215532166135534 0.211552603495251 0.211552603495251 0.220182272722253 0.215191136120636 0.215875288953215 0.214824833999413 0.213508558862749 0.211552603495251 0.212747795789229 0.219979049128855 0.217218909187503 0.219803452949182 0.221710440766357 3 3 + 3231253 3231790 3231517.091 3229298 3231824 + gene protein_coding_gene FALSE TRUE AT3G10390.1 FLD (FLOWERING LOCUS D); amine oxidase Encodes a plant homolog of a SWIRM domain containing protein found in histone deacetylase complexes in mammals. Lesions in FLD result in hyperacetylation of histones in FLC chromatin, up-regulation of FLC expression and extremely delayed flowering. FLD plays a key role in regulating the reproductive competence of the shoot and results in different developmental phase transitions in Arabidopsis. similar to amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62830.1); similar to amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13682.1); similar to Os04g0560300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053545.1); similar to B0103C08-B0602B01.13 [Oryza sativa (indica cultivar-group)] (GB:CAH68056.1); similar to Os02g0755200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048161.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Amine oxidase; (InterPro:IPR002937); contains InterPro domain SWIRM; (InterPro:IPR007526) 0.233126280943275 2.29503818751469 0.0426428247290302 1 1.53040923321037 4.70108913472264 0.233126280943275 0.101028206613947
AT3G53180_at 7.83969215575687 8.04009538963464 7.71642698214162 7.80391365814486 8.313348909016 7.58438537675058 8.70449651158083 8.45081404675991 8.12566211032395 8.257500629121 7.90761188031331 7.95707737494031 8.12024283982664 7.99210861843596 7.4467513018164 8.02050804219483 8.08818189104165 8.100278141589 7.87517849151997 0.153114614343667 0.159938087289787 0.167487633490605 0.151511013766703 0.154604607190029 0.159626067260903 0.158685716840456 0.157460590622572 0.157444791786164 0.146783281636769 0.151091519780580 0.153930532023187 0.152767995854657 0.156482091731769 0.156693548177385 0.154181779359039 0.157466470516191 0.150928667443035 0.153651888318352 3 3|0 +|/ 19721350 19722142 19721685.556 19717872 19722417 + gene protein_coding_gene FALSE TRUE AT3G53180.1 glutamate-ammonia ligase similar to glutamine synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47747.2); similar to glutamine synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66111.1); similar to glutamine synthetase [Saccharum officinarum] (GB:AAW21277.1); contains InterPro domain Amidohydrolase 2; (InterPro:IPR006992); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) -0.268137263402504 -2.29495028481315 0.0426493934208467 1 1.53027621856475 16.0767510061855 -0.268137263402504 0.138828027872396
AT2G25190_at 7.1628693952114 7.33787274922173 7.56422577005948 7.60159544549888 7.6488720375278 7.35358096737143 7.55164940731591 7.02126480576592 7.04085798411987 6.78141523885064 7.42905098155118 7.17434212474222 6.80613269815872 7.39391934692598 6.68152063072953 7.203416380527 7.02639965515621 7.00428663122783 6.82624926006941 0.219776886831532 0.225619332469258 0.228572834287241 0.228119575660004 0.210734195336205 0.230365412069221 0.208134451794420 0.223483169099504 0.218393749051519 0.211152754530029 0.221947321436596 0.209078551460467 0.223359987091104 0.208567400382416 0.218334925634177 0.205762416554277 0.233030905475120 0.217838462377944 0.208289268789999 2 2|0 +|/ 10742071 10742464 10742292.7 10741025 10742778 + gene protein_coding_gene FALSE TRUE AT2G25190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31980.1); similar to hypothetical protein 25.t00041 [Brassica oleracea] (GB:ABD64953.1); similar to Os03g0198500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049279.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) 0.240348597091510 2.29418510835621 0.0427066138454068 1 1.52911841140148 14.3916035141502 0.240348597091510 0.10952149765995
AT2G43235_at 5.97745382213076 6.49317789150667 5.95624598989657 6.16930779809618 6.33169176327056 6.24493972902417 7.05203814339098 6.5931548709884 6.1459998026367 5.73573502962426 5.36166945013568 5.24679419506354 5.95119277301853 6.00105509763784 5.30873730471534 5.94066532069172 6.21379557599738 5.68153041423318 5.730076893667 0.224173082155735 0.225351653686930 0.221111237834000 0.218373018412358 0.231992926377336 0.223176205811393 0.229423318448681 0.229523600285256 0.230776882195286 0.227134363974307 0.225488942268894 0.222302760520731 0.229054151456930 0.222139349094302 0.223888708952882 0.220761595333922 0.218373018412358 0.231405668321548 0.222320656597081 2 2 - 17975995 17977348 17976829.1 17975775 17977912 - gene protein_coding_gene FALSE TRUE AT2G43235.1 sugar porter similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55664.1); similar to Os05g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055128.1); contains InterPro domain Nucleotide-sugar transporter; (InterPro:IPR007271) -0.255416877069166 -2.29416866619240 0.0427078442132904 1 1.52909353354954 12.1441432135777 -0.255416877069166 0.125922262977261
AT1G55880_at 4.22359902128626 3.76104766099527 4.58739310470015 4.45414807683802 4.54974522285432 4.89528894290632 3.89808798137598 3.59033718338363 4.12557347733256 3.86305782366946 3.48491123926077 4.03572053767534 4.02582010815239 3.66193631172919 3.89397741616951 4.08596202970815 4.10191859073323 4.02023434821977 4.53846376831102 0.214592935641481 0.193331789193283 0.195965727687631 0.196773361916831 0.19563556001901 0.197695365125825 0.198383273990488 0.199877647994720 0.199022151807018 0.193331789193283 0.199835149527788 0.193585974474403 0.193331789193283 0.204863399834504 0.198013704108783 0.193331789193283 0.198252004392442 0.204700343332515 0.202188570846912 1 1 - 20902980 20903708 20903346.909 20902563 20904848 - gene protein_coding_gene FALSE TRUE AT1G55880.1|AT1G55880.2 pyridoxal-5'-phosphate-dependent enzyme, beta family protein similar to cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative [Arabidopsis thaliana] (TAIR:AT5G28030.1); similar to Os03g0215800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049379.1); similar to hypothetical protein UM02218.1 [Ustilago maydis 521] (GB:XP_758365.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216)|similar to cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative [Arabidopsis thaliana] (TAIR:AT5G28030.1); similar to Os03g0215800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049379.1); similar to cysteine synthase [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_572428.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216) 0.245743795666388 2.29415044994051 0.0427092073761508 1 1.52906597146809 8.28971011386436 0.245743795666388 0.115548044961141
AT4G15400_at 1.48836843575000 1.48195236508008 2.12474598278602 1.54412089644027 1.21084237369306 2.02184504071335 1.12022014941132 1.30994848894862 1.40778708611932 1.18749857243920 1.71505666009701 1.45135791221016 1.56135509901836 1.47316207943864 1.87172413408703 1.62332099992339 1.90042032271037 1.55601567216112 1.62095109619158 0.214976203159103 0.216706325839389 0.212086319545827 0.21250193713657 0.218502618718786 0.207760587044771 0.207934194157974 0.210296950888307 0.221645089494342 0.217171615712694 0.218441009388748 0.212360310916414 0.211279779119215 0.20813505617264 0.210706933179384 0.210500290645672 0.208032186227622 0.214665133798458 0.214145963844792 4 4 - 8812167 8812696 8812487.364 8811928 8813478 - gene protein_coding_gene FALSE TRUE AT4G15400.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G47980.1); similar to putative alcohol acyl-transferases [Cucumis melo] (GB:AAW51126.1); similar to minovincinine 19-hydroxy-O-acetyltransferase [Catharanthus roseus] (GB:AAO13736.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.30695278599153 2.29329443422084 0.0427733122422177 1 1.52777084695775 3.0624873973724 0.30695278599153 0.175707064859386
AT1G17615_at 1.17223313223326 0.955491115055416 1.29715846904636 1.49489495096705 0.910261062078596 0.867398112911744 0.117584995681426 0.596338476329376 0.751915157843786 0.751587944698216 0.612533162415451 0.535249400165943 1.09896543252613 0.749740693494044 0.493943063565648 0.568424838623051 0.585840204506735 0.79396579923247 0.45228085924215 0.191800660429336 0.190851639754898 0.198384936634267 0.200318495419601 0.190280820782248 0.201775189814597 0.194918279123503 0.190280820782248 0.196509980560729 0.194049980753732 0.196290273602736 0.194755041736037 0.200519736756308 0.190280820782248 0.201335989953798 0.192955436022954 0.200780054583191 0.197646748233746 0.193656404547721 1 1 + 6060089 6060636 6060412.727 6059434 6060660 + gene protein_coding_gene FALSE TRUE AT1G17615.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72950.1); similar to resistance gene analog PU3 [Helianthus annuus] (GB:AAL07535.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.229960527990435 2.29304548682120 0.0427919726821333 1 1.52739422293028 1.59230044507669 0.229960527990435 0.0974528181548769
AT4G11270_at 6.75970538357131 6.74817484535273 6.78578269966176 6.69537249378703 6.5308998908226 6.23964221795649 6.57398833129004 6.52475550178837 6.02326831239682 6.13082026765098 6.49949222577169 6.98986406337448 6.84872362775222 6.61484480334511 6.37947353762982 6.57653104666987 6.24444874071588 6.56789136583884 6.14947531223712 0.194521189405556 0.197079515023577 0.210115593585338 0.191960262827893 0.193149326810521 0.218749083164262 0.198057484720233 0.194290307172153 0.200681421785273 0.188290131305100 0.190165316668409 0.197584933766866 0.190572590608071 0.198000508747425 0.193953815470069 0.188290131305100 0.203266955274544 0.200377035978137 0.188290131305100 4 4|0 +|/ 6858627 6859456 6859044.4 6854360 6859660 + gene protein_coding_gene FALSE TRUE AT4G11270.1 transducin family protein / WD-40 repeat family protein similar to hypothetical protein DDBDRAFT_0168971 [Dictyostelium discoideum AX4] (GB:XP_644959.1); similar to Os06g0331300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057541.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.200119511174310 2.29279248464704 0.0428109450934202 1 1.52701147633520 12.9529634907699 0.200119511174310 0.0534965296439075
AT2G30280_at 3.53873526892008 3.888982966973 3.97346416687833 3.95848503989397 3.55405038218912 3.40492223403017 3.59508217564019 3.58692182934968 2.51058341370298 3.68397696353813 3.76004935035160 3.77351778391256 3.70806976321530 3.73860811141293 3.81188985628942 3.87887483469055 3.82686245568976 3.28818177385894 3.94319724523584 0.199992755643560 0.197750785429619 0.209584410903017 0.204555210970605 0.200732568806376 0.212759061378802 0.199200714226431 0.199590016486812 0.205966596862185 0.207841263994679 0.204623423616410 0.197750785429619 0.198181030097708 0.212302947761082 0.199820966054984 0.201087842131724 0.215157401484025 0.199248248876918 0.200508893063442 2 2|0 -|/ 12916881 12917928 12917462.778 12916670 12919417 - gene protein_coding_gene FALSE TRUE AT2G30280.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to Os12g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065964.1); similar to orf 48 [Ateline herpesvirus 3] (GB:NP_048021.1); similar to Os11g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065558.1) 0.207152047939572 2.29255725645914 0.0428285919192039 1 1.52665562921331 7.23883514898596 0.207152047939572 0.0659435054671778
AT3G57785_at 7.87705238645274 7.983041934229 7.63749846708767 7.70001168376155 7.42948585645347 8.03404663101188 7.63184300064526 8.17490516252966 7.62301498912888 7.46200329224296 7.42238597614401 7.05561839485868 7.40703107080779 7.33225161028619 7.30327341097295 6.97232173888515 6.95559585596272 6.89938942811129 7.39878829893506 0.185807255326490 0.186709631017675 0.194175516890794 0.190237903399737 0.181276718824435 0.193515017009597 0.183473612368262 0.185610100719510 0.185478115077061 0.189952250249800 0.185134886444148 0.181276718824435 0.182175745999475 0.191369479887135 0.185778499487190 0.181276718824435 0.191588687532251 0.188225261000409 0.197112896256553 3 3 - 21415825 21416120 21415971.909 21415551 21416194 - gene protein_coding_gene FALSE TRUE AT3G57785.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42310.1); similar to Os09g0487500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063525.1); similar to BAC19.9 [Lycopersicon esculentum] (GB:AAG01124.1) -0.271284359533778 -2.29249873711283 0.0428329831308269 1 1.52656710425241 15.1400284548660 -0.271284359533778 0.142237030525784
AT1G38950_at 1.33897112185936 1.00495447316564 1.62205407689832 1.30086325686782 1.21304308448367 1.61839108573493 1.46733054264325 1.21013069760647 0.76367534496038 1.38335574679420 1.46888287966406 1.32190053501451 1.72885815659344 1.33346713229665 1.33992062515029 1.43444057513357 1.35799263929133 1.11834975433974 1.09367197665231 0.18801478518833 0.193532291468826 0.192146660575917 0.192017699778882 0.189733357229753 0.189027527259657 0.204609981173127 0.194983867483194 0.194635429513905 0.194444413906421 0.188354251304152 0.191145860897765 0.190886696392418 0.199542787016870 0.188782988357941 0.187835090214385 0.197302492160667 0.196345196397496 0.189785387283382 1 1|0 +|/ 14590313 14590826 14590539.7 14590293 14590860 + gene protein_coding_gene FALSE TRUE AT1G38950.1 unknown protein 0.245491674113662 2.29248927676365 0.0428336930632060 1 1.52655279319794 2.58107273906797 0.245491674113662 0.115466427402673
AT1G47670_at 3.04481130481888 3.36084637008788 1.96000176132624 1.99437267465108 2.70311667901502 2.36119826719330 3.1099190556146 2.7549442005717 2.82455981912792 3.18577388794459 3.52856801242952 4.05397653060643 3.49492416462289 3.85838013633182 4.31577358213471 3.798085741217 3.4018115862134 3.75737767034502 4.27863014444426 0.225562010452225 0.227024635083017 0.240534099930932 0.231385276821476 0.22643671330024 0.232040928655868 0.222385237187821 0.228703789569886 0.236799748478323 0.225525962287377 0.225341847187242 0.221377474719959 0.226153994902726 0.221377474719959 0.226860878224762 0.225780919579374 0.228146108536083 0.229697249179578 0.223396607615744 1 1 - 17539280 17540032 17539665.818 17539107 17541978 - gene protein_coding_gene FALSE TRUE AT1G47670.1 amino acid transporter family protein similar to LHT7 (LYS/HIS TRANSPORTER 7), amino acid permease [Arabidopsis thaliana] (TAIR:AT4G35180.1); similar to ORF [Lilium lon (GB:BAA04838.1); similar to Os12g0485600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066783.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.233250163205756 -2.29239661072939 0.0428406475938828 1 1.52641261440154 6.26403468673977 -0.233250163205756 0.101495471567501
AT3G62400_at 8.53949364371156 8.96524967250087 9.01698142797219 9.13196381398282 8.98072535508981 8.45936341862403 9.07410021077854 9.08526073139674 9.2761262774026 9.00762514836852 9.76041361975797 9.7762356925884 9.54858730178817 9.9531971009657 9.37888665123016 9.95719804570177 8.98326765649178 9.30843864816941 8.92233157830892 0.172659294882818 0.166393557738945 0.170737394048207 0.175423762004187 0.169397618565328 0.186405982950086 0.168765055774063 0.167869099869085 0.173878699017568 0.164068721696378 0.166579638242531 0.166198465769464 0.164038692315884 0.165236275447864 0.170814038858032 0.167763146383192 0.186056331658960 0.170073665751902 0.173068452421775 3 3 + 23101429 23101612 23101505.455 23100617 23101713 + gene protein_coding_gene FALSE TRUE AT3G62400.1|AT3G62400.2 unknown protein 0.247908097106806 2.29180324344919 0.0428852052463749 1 1.52551504699578 18.2326284963971 0.247908097106806 0.118189110339902
AT3G17140_at 1.69955810728242 2.17686969050338 2.19827749428053 2.02349457290426 1.74301728553486 2.31836557510076 1.28857779927381 1.95011086390111 2.17454655732823 1.76958347095705 1.85750914678221 2.00578259214931 2.24184753688351 2.184407439001 1.97964521261271 2.11640360741557 2.6273436329943 2.11528957992052 1.51681384341769 0.191928469833900 0.193558610702473 0.198032371842914 0.196240432815862 0.201345186859016 0.196309262765606 0.195513937769231 0.200635187219118 0.191718212710891 0.194386367023349 0.190647625435143 0.200191485050033 0.196814173587430 0.191142297989414 0.198469044970694 0.201639383065097 0.196291112134097 0.192254187229570 0.201702634535287 3 3|0 -|/ 5846008 5846569 5846161 5846008 5846595 - gene protein_coding_gene FALSE TRUE AT3G17140.1 invertase inhibitor-related similar to C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1), pectinesterase inhibitor [Arabidopsis thaliana] (TAIR:AT1G47960.1); similar to invertase inhibitor homologue [Nicotiana tabacum] (GB:CAA73334.1) 0.306361793141914 2.29159973203012 0.0429004977829273 1 1.52520721693663 3.90545553228308 0.306361793141914 0.175377652557068
AT4G04070_at 0.785967608957835 0.542022377587114 1.11054875579400 0.838255105745043 0.94799379236367 1.05703791720318 0.826223923077069 0.4916393613062 0.843117134713983 0.698116688440162 0.84890324569131 1.10209168516228 1.35145065507658 0.722187481322591 0.451472612268083 1.08694734964396 1.07469591497122 0.867967178283075 0.921663633338861 0.213421697153163 0.212865869984057 0.217344663111424 0.211935689887818 0.211935689887818 0.215057335165749 0.217099630324271 0.212776576876531 0.220141122174516 0.217762654033306 0.219390252725886 0.211935689887818 0.218271367660609 0.213251257312741 0.217735997749804 0.211935689887818 0.221921802975693 0.22066204160534 0.212582456880984 4 4 - 1951655 1951801 1951748.636 1951540 1954606 - gene protein_coding_gene FALSE TRUE AT4G04070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07530.1); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436) 0.222122135757902 2.29091251147535 0.0429521766914895 1 1.52416778842819 1.70455127232096 0.222122135757902 0.0878140408507093
AT3G15710_at 9.5118876995464 9.52523970265956 9.24373299485457 9.31829160492863 9.53895311209343 9.12572534873535 8.6516665398162 8.70851928552322 8.95756786822959 8.47607607006616 8.85607146490227 8.91963333032825 8.61824734965453 8.74372028687091 8.85490074035653 8.67092812878824 8.3563925132525 8.65914122620297 8.04775060271176 0.143255377485378 0.143820092660277 0.148824123841625 0.143378478768207 0.142759596937340 0.148217641618904 0.1441148837234 0.139268527610913 0.143104303881410 0.147195985014521 0.143673026873511 0.143210393652653 0.140103977288633 0.143890230442445 0.140023819620965 0.145479100398410 0.148014808273338 0.142783501073241 0.153606078933817 3 3|0 -|/ 5323588 5324728 5324256.6 5323365 5324915 - gene protein_coding_gene FALSE TRUE AT3G15710.1 signal peptidase, putative similar to signal peptidase, putative [Arabidopsis thaliana] (TAIR:AT1G52600.1); similar to Peptidase S24, S26A and S26B [Medicago truncatula] (GB:ABD28715.1); contains InterPro domain Peptidase S26B, eukaryotic signal peptidase; (InterPro:IPR001733); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) 0.211714328987671 2.29034616247702 0.0429948111430896 1 1.52331124547017 17.8048408162098 0.211714328987671 0.0733651121322118
AT3G05990_at 4.1049460427463 4.8786633361867 4.63462761819335 4.48896681255377 4.97940312526515 5.31886114816994 4.42723239214994 5.21288315802663 5.2640316665146 5.71395545544282 4.815799765184 5.15531399993568 4.8380126294286 4.62018310277397 4.09195936979097 5.02415244276223 4.78737838166832 4.57608045041026 5.84847013420848 0.235438829990525 0.214462171062896 0.221411669026946 0.222176230532409 0.219101820258121 0.226147600171811 0.226554575462694 0.212168506582443 0.238147677286269 0.222028324835099 0.212168506582443 0.216383980030500 0.214495470833098 0.234959729718822 0.219449908304069 0.216324692640388 0.228499361779806 0.218433881119172 0.221790865100962 3 3|0 -|/ 1797284 1798548 1798073.111 1796858 1799876 - gene protein_coding_gene FALSE TRUE AT3G05990.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G19230.1); similar to Os03g0184400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049189.1); similar to Putative protein with similarity to putative protein kinases [Oryza sativa] (GB:AAK92623.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.335337811938109 -2.28942946336533 0.0430639061671071 1 1.52192496160912 9.92941250572791 -0.335337811938109 0.201245118668878
AT3G53500_at 8.93075346064542 8.87289317614727 9.28522718384614 9.19659541548154 9.24566550691641 9.25624326460376 8.87829809666436 8.85424553730227 8.39571167839255 8.5942194827867 8.62781207782487 8.89882764903742 8.56130441076345 8.56913598565056 8.69648663324583 8.6221180499677 8.83936980325335 8.58288271351826 8.99628715269658 0.126634242396232 0.126610690247204 0.131173181419187 0.130946942292289 0.127339376551769 0.127142940735969 0.127721496368800 0.133542429014961 0.140131609596229 0.13864586639174 0.137553481597697 0.127331343723583 0.137507315089325 0.128929466292202 0.140056003652472 0.130193354942427 0.131510751063687 0.138711842171876 0.13008627284357 3 3|0 -|/ 19845543 19846500 19845873.2 19845321 19848066 - gene protein_coding_gene FALSE TRUE AT3G53500.1|AT3G53500.2 RSZ32; nucleic acid binding similar to RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33), nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G37340.1); similar to Os01g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042066.1); similar to Os03g0285900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049771.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33), nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G37340.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.187277334568934 2.28846311892625 0.0431368589362486 1 1.52046377099027 17.7333976735507 0.187277334568934 0.01887313047687
AT1G32080_at 10.7557788887219 10.7980661910007 10.6375409546828 10.5495034669665 10.9309778816419 10.6881152441917 11.6756038764200 11.6101678629967 11.6861647680162 11.6869587859187 11.7376482531255 11.9202572495728 11.5139250734361 11.7973575525705 11.9698954266272 12.0874799908005 11.2611522580809 11.8858519416091 11.5952590716739 0.0809831451816944 0.0745448738121717 0.08535511070926 0.0772842021556536 0.0754368404423855 0.082842030099103 0.0755409161886497 0.0773109126147409 0.0813796870986489 0.0764696754647148 0.0770310857047061 0.0754289834849785 0.0765392260647867 0.0794771090531197 0.0828291433238996 0.0742161694338151 0.0905854032709716 0.0756946729292648 0.0751346781144041 1 1|0 -|/ 11537565 11538296 11537908.3 11537322 11539780 - gene protein_coding_gene FALSE TRUE AT1G32080.1 membrane protein, putative similar to Os10g0578800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065502.1); similar to LrgB-like family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48034.1); contains InterPro domain Duffy antigen/chemokine receptor; (InterPro:IPR005384); contains InterPro domain LrgB-like protein; (InterPro:IPR007300) -0.196400695777941 -2.28812764658387 0.0431622127550527 1 1.5199565505736 22.6696310508765 -0.196400695777941 0.0466936463642491
AT1G43950_at 1.29304529731194 1.07938556618285 1.24472874311501 1.35065302992171 1.01494823595840 1.05317316527537 1.28066434434493 1.19995078590521 1.33921402275718 1.52815734857257 1.34086177050672 1.16915937742836 1.28829830506162 1.11215374524521 1.38305065590692 0.989282720852587 1.02725446688958 0.673065168751999 1.53048258886906 0.177705699008488 0.168266463237512 0.172473823611990 0.171511834386064 0.171851654704963 0.172615960965537 0.172947826717956 0.169714603548348 0.173822360801119 0.167355353629791 0.170463432738285 0.172123618233029 0.170556155492471 0.169091281194635 0.170358287596015 0.167571386758291 0.167355353629791 0.179449083487470 0.176066680915695 1 1|0 -|/ 16675187 16675515 16675406.125 16675022 16676392 - gene protein_coding_gene FALSE TRUE AT1G43950.1 ARF23 (AUXIN RESPONSE FACTOR 23); transcription factor Identical to Putative auxin response factor 23 (ARF23) [Arabidopsis Thaliana] (GB:Q9LP07); similar to ARF12 (AUXIN RESPONSE FACTOR 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34310.1); similar to Putative auxin response factor 15 (GB:Q9LQE3); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.195223124302253 -2.28805101774023 0.0431680061065018 1 1.51984069385773 2.48398969420025 -0.195223124302253 0.0440682466187021
AT3G15260_at 7.21892089616605 7.1136230401083 6.86548077033226 7.0159149619697 7.00177961630528 6.68240518653056 6.64433078399132 6.27237559987648 6.0496029516336 6.3616192073382 6.28068482499213 6.2190494558302 5.69505211308334 5.92610651926052 5.40596614593925 5.89667039897344 5.6550356908201 5.08930166561623 6.48278592584043 0.196905234285892 0.206195900799141 0.203882217844467 0.206025199406735 0.201963199501427 0.202937664700052 0.197764543722113 0.199652014467729 0.207984234603553 0.205380588469793 0.20083874706749 0.202365530512332 0.206293145682999 0.214832225696946 0.197824098569981 0.200462850028980 0.204988501591325 0.204460022008068 0.210005071025634 3 0|3 /|+ 5139682 5140217 5139940.778 5138693 5142651 + gene protein_coding_gene FALSE TRUE AT3G15260.1|AT3G15260.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G28400.1); similar to protein phosphatase type 2C [Lotus japonicus] (GB:AAD17805.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.223968394687047 -2.28785249546779 0.043183018419981 1 1.51954054908127 12.8863468802859 -0.223968394687047 0.0905968469734777
AT3G42240_at 3.16165000969980 2.74190377588673 2.93766587856431 3.12806183942553 2.99138750383456 2.74479038303429 3.22685887154352 3.08556500937936 3.55002076827476 3.36908109470340 3.13630209671953 2.9472905340702 3.11795986537570 2.77955352572727 2.9776634321829 3.15426483011773 3.12041567876242 3.18069988656237 3.28392020387183 0.182862136353550 0.195611220931107 0.194130541496930 0.189736598269303 0.190866705551338 0.190324557794187 0.188688146215257 0.193502352364665 0.195426299605811 0.201096284128439 0.192350808664092 0.182862136353550 0.188466050078633 0.185263461504089 0.182862136353550 0.182862136353550 0.188868416384877 0.184224628656976 0.190397596993533 3 0|3 /|- 14408334 14409057 14408675.143 14408316 14409279 - gene protein_coding_gene FALSE TRUE AT3G42240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1) -0.226378319919788 -2.28745528952281 0.043213070347086 1 1.51894003764232 6.22862345232422 -0.226378319919788 0.0937074015598339
AT1G04170_at 8.6313120870259 8.70810488549894 8.39485856839821 8.31244981971746 8.2430053825906 8.07996801328652 8.96850332779868 8.88441247344394 7.57019523146162 7.91135862566343 7.99566170180253 8.49888510155286 7.65827300540827 7.34092557149671 8.61273765300634 7.7881651756156 7.51067448549326 7.54257978340894 7.65672672579942 0.17797769070368 0.175047889271401 0.182426509547932 0.180507332201328 0.185172292646898 0.187637179425074 0.176956167500231 0.175047889271401 0.193268967520708 0.180969510906842 0.178395848174832 0.179342975091761 0.182691397974636 0.181327127012704 0.183938771257737 0.185575628970359 0.195805562404843 0.187020949397844 0.179642335226066 1 1|0 +|/ 1099063 1099656 1099285 1096945 1099897 + gene protein_coding_gene FALSE TRUE AT1G04170.1 EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit); translation factor, nucleic acid binding protein synthesis initiation factor eIF2 gamma similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT4G18330.2); similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT2G18720.1); similar to Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) (ISS) [Ostreococcus tauri] (GB:CAL53687.1); similar to translation initiation factor 2 gamma subunit [Lithobius forficatus] (GB:CAG29663.1); similar to translation initiation factor 2 gamma subunit [Lepismachilis sp. VK-2004] (GB:CAG29668.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.192392566014382 -2.28710548961846 0.0432395522908945 1 1.51841122096092 16.3184508217356 -0.192392566014382 0.0372533241078251
AT2G23360_at 3.21424782676232 3.58797623449187 2.74317740646061 2.95297513912973 2.86970009838772 2.7738633684301 3.49336434265242 3.50332185835862 3.7573340070142 4.20356947829478 4.74270533028999 5.35019043805624 3.81008368331414 4.25341894672689 4.65947346217391 3.66937065984704 3.16414845088396 4.34176313104028 4.22057983728703 0.201812018757187 0.204460504238220 0.208913204644789 0.208515803098269 0.204083543306628 0.201860721474812 0.201812018757187 0.204294615778078 0.215276458158836 0.203906431893503 0.206269421651402 0.213558287510513 0.204933793054340 0.201812018757187 0.208637137018193 0.202173956280375 0.213764162786973 0.207769852969067 0.203663101451037 2 0|2 /|+ 9959298 9959777 9959559.2 9956536 9959925 + gene protein_coding_gene FALSE TRUE AT2G23360.1 transport protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19835.1); similar to H0212B02.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86178.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) -0.213199370269026 -2.28698013123538 0.0432490464732057 1 1.51822171361080 7.29702263616262 -0.213199370269026 0.0760204226005655
AT3G46630_at 9.62628699798599 9.73622256725796 9.48958608624128 9.60278075677926 10.0625704729621 9.6243301490951 9.73502637732045 9.88054516944865 9.79207979179046 9.5016567251709 10.1593461334458 10.2538134837439 9.89526133183996 10.1321607978527 9.89953821385226 10.3819311325803 9.81145969702966 9.85760489418296 9.38889405064589 0.155076316257203 0.141734682599173 0.148757134671342 0.142073638065349 0.153537056987686 0.146188733763442 0.156898658165147 0.153334053872029 0.160732960647028 0.158906438034647 0.148441929257492 0.143205902012638 0.144171307885168 0.146206320220069 0.155688706480090 0.143586461732451 0.164505773199312 0.152944136055728 0.162352549601124 3 3 - 17192165 17193266 17192758 17191919 17193442 - gene protein_coding_gene FALSE TRUE AT3G46630.1 similar to defective chloroplasts and leaves protein-related / DCL protein-related [Arabidopsis thaliana] (TAIR:AT1G45230.1); similar to putative defective chloroplasts and leaves (DCL) protein [Oryza sativa (japonica cultivar-group)] (GB:AAQ56405.1) 0.219154596481522 2.28637497352253 0.0432949071329775 1 1.51730692324243 19.5245517303539 0.219154596481522 0.084448045176105
AT1G05860_at 2.42553070147072 2.56774323219644 2.65216455597366 2.90776699168188 2.88131825021001 3.07669812226617 2.28922710250939 2.86734704511834 3.03890860141887 2.86721289955585 3.3202694519649 3.39176348105564 3.15245703273012 3.28589465717454 2.60146857731934 3.24967799857907 3.16881780150778 2.74366865725555 2.98473924918988 0.187020423163641 0.187085682288967 0.192083394595427 0.188495691422879 0.194517536974316 0.201253275952773 0.187020423163641 0.190918046932560 0.198976131573537 0.198437227796785 0.187943241717541 0.187749802114241 0.196894382316295 0.191277817722047 0.192336608555610 0.190254507454573 0.191999913404976 0.189635279275038 0.191392626998723 1 1 + 1769313 1770231 1769859.091 1769013 1771114 + gene protein_coding_gene FALSE TRUE AT1G05860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31600.1); similar to Os05g0304100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055141.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96319.2) 0.246328458426356 2.28633813785846 0.0432977001610814 1 1.51725124260201 5.74741072880494 0.246328458426356 0.117109937354619
AT2G19710_at 5.19113261356797 5.91947156801774 6.26804805982738 6.11277372836878 4.59519308347824 5.17841204981562 4.77398700145133 4.6064485354207 5.1786132331012 4.61175583994284 5.21757890007387 4.93770112201062 4.75244817460982 4.60006347179647 5.02999375457205 5.16919329970848 5.00100542433998 5.02916569012192 4.58490657162564 0.232304530492173 0.238073572342046 0.235468808926729 0.236031801161925 0.231865167823400 0.235019786359066 0.236535610008665 0.239134204129108 0.235620501474895 0.231087986887275 0.232463175754808 0.230601319980397 0.233784017131264 0.237512682068383 0.230931526174011 0.237751253899336 0.238164774824432 0.230654639273717 0.230601319980397 2 2 + 8516312 8516859 8516589.909 8513212 8517163 + gene protein_coding_gene FALSE TRUE AT2G19710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29440.1); similar to MAPK activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82253.1); similar to Os01g0706400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044016.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.295615991094495 2.28581252441890 0.0433375731903548 1 1.51645675519467 10.2101344689322 0.295615991094495 0.166240713909329
AT1G50470_at 1.77339615333838 2.15697886502693 2.41426801848769 2.28625185719540 1.67819509096569 1.94475339602850 1.95879829332191 2.34147572528527 2.55434493885649 2.82263986943156 2.03619865086774 2.23262761907495 2.2796570045065 2.46591541560516 1.81472895910973 1.96841175350835 2.44265437928901 1.96303138269149 2.56646972333746 0.208082872822431 0.204115406971064 0.211766362453798 0.211170732367156 0.202998144474448 0.209086784155029 0.200172423426750 0.203348399750030 0.199155399225332 0.206263498950565 0.205240857988672 0.197335215597863 0.201867020065813 0.197335215597863 0.209101250504571 0.197708950871401 0.20083549639385 0.197335215597863 0.203894585036767 1 1 - 18703668 18704083 18703891.636 18703668 18704112 - gene protein_coding_gene FALSE TRUE AT1G50470.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17560.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.237105100100343 -2.28569868151844 0.0433462139684646 1 1.51628468356825 4.46837533635128 -0.237105100100343 0.106821021745213
AT3G61820_at 8.32926676036528 8.75330773877325 6.0381153408505 7.02554465112566 6.33418237927487 6.50730794666028 7.572898733252 8.28173697860598 6.54513986680705 6.93496314125629 7.71412649851901 9.2949301055342 7.03451752030628 7.8748023559555 8.70197591677395 7.85357434063902 7.22554496277269 7.75149083995476 7.21386024370175 0.214684892998579 0.206947796024669 0.225790639223548 0.207432231380481 0.214911618752421 0.207165407561152 0.208471669765636 0.213306814657655 0.229752852508395 0.212709560847478 0.210786820456709 0.207978627478223 0.210942220114281 0.202891837605744 0.21355450284149 0.202891837605744 0.207457177515348 0.210470373777787 0.205901404953599 3 3 - 22891090 22891592 22891350.455 22890779 22892605 - gene protein_coding_gene FALSE TRUE AT3G61820.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G01300.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAT38006.1); similar to Os05g0590000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056485.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.362316203151367 -2.28504251463078 0.0433960499667137 1 1.51529294583204 14.7699741001861 -0.362316203151367 0.224788050720058
AT2G33530_at 9.12620854013396 9.5646528911473 9.17662061483178 9.45099882633548 8.4837388166084 8.38055542339793 8.79418143747003 9.05212494750419 8.93041836678325 8.7885408137463 8.41060746010724 8.75913350441107 8.42884533825886 8.60606748976138 8.30171364386592 8.59236813880177 8.71708002790658 8.88568346575072 8.65549186061309 0.147620601972495 0.145854949343774 0.149667120313666 0.147880439386274 0.144004078888251 0.156984439818539 0.147340978693277 0.141791618258358 0.148022484801303 0.144007699046848 0.165319184159379 0.143101327735029 0.148391805614402 0.150295172817329 0.154241752059372 0.145925852537564 0.149757926270613 0.141076011171855 0.141876117499699 2 2|0 -|/ 14204960 14205859 14205311.4 14204722 14207633 - gene protein_coding_gene FALSE TRUE AT2G33530.1 SCPL46 (serine carboxypeptidase-like 46); serine carboxypeptidase similar to SCPL45, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G28110.2); similar to Os04g0396800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052663.1); similar to Serine carboxypeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93967.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.232554915271705 -2.28468479373604 0.0434232421666111 1 1.51475231669329 17.6932207191730 -0.232554915271705 0.101602177726370
AT4G33650_at 6.92244099594712 6.76621413083506 6.92978354587199 6.56320900943657 6.51216644424932 6.61591249641622 7.04380665001791 6.95081190108566 6.75173760436087 6.73171841555215 6.48378036831988 6.37996410256655 6.64007011393825 6.52403224083077 6.36115999863614 6.86912500879646 6.37018622402838 6.4650103651466 6.52059046978838 0.162216743168187 0.161138511036404 0.158775711921671 0.165883157227642 0.157425197930616 0.162525551871163 0.161759231072546 0.166206413767505 0.164488501768464 0.164676687731992 0.155905740152760 0.160123068006413 0.162862110876797 0.166536209486699 0.159347653247233 0.157872317440087 0.164368295731217 0.162524703230171 0.164974419891115 4 4|0 +|/ 16165535 16166514 16166056 16160938 16166932 + gene protein_coding_gene FALSE TRUE AT4G33650.1 ADL2 (ARABIDOPSIS DYNAMIN-LIKE 2); GTP binding / GTPase Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Chloroplast localized. Identical to Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a) (DRP3A) [Arabidopsis Thaliana] (GB:Q8S944;GB:O22403;GB:O81882;GB:Q94CF3); similar to dynamin-like protein 2b (ADL2b) [Arabidopsis thaliana] (TAIR:AT2G14120.1); similar to OSJNBa0072D21.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE02157.2); similar to Dynamin central re (GB:ABD28549.1); similar to Os01g0920400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045220.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.210949994631083 -2.28433263732911 0.0434500274045568 1 1.51422012077056 13.3778839214075 -0.210949994631083 0.073051822258848
AT1G70770_at 8.55682122745766 8.92330833038176 8.7615656966183 8.94821983632517 9.14508424997816 8.56590780116618 8.39074254057488 8.65947026449015 8.02684871599339 7.66494334234146 8.20674693671891 8.18564221078945 8.11413974175655 8.28889486902285 8.04931652272558 7.93305246256514 7.76305513641198 8.05447314356684 7.64166705303774 0.164025250238833 0.169419130824997 0.1715028590683 0.166230343089406 0.165540630778704 0.163511064429847 0.163182912315093 0.16211616840825 0.175972738312444 0.170812914964751 0.165630810557117 0.164977262787545 0.164688590927253 0.165955034749160 0.173639609565360 0.166300608652649 0.182072514347472 0.164788144783695 0.173935181782006 1 1 - 26692290 26693025 26692577.182 26691892 26694939 - gene protein_coding_gene FALSE TRUE AT1G70770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23170.1); similar to Os01g0128400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041912.1); similar to hypothetical protein [Platanus x acerifolia] (GB:CAL07978.1); contains domain FAMILY NOT NAMED (PTHR13448); contains domain gb def: Hypothetical protein F5A18.5 (F15H11.2 protein) (Hypothetical protein At1g70770) (PTHR13448:SF2) 0.259602114724822 2.2842269403424 0.0434580698870411 1 1.51406039088889 16.6700074092418 0.259602114724822 0.131431857134313
AT1G74920_at 10.1185227824912 10.2034842485653 9.88259607903755 9.8043587449999 10.1350425129679 9.790130591215 9.87644081227368 10.0491164173558 9.9619057095223 10.357896852142 9.97507385584014 9.74369648069497 9.8522141362466 9.86480313207432 10.0659301900435 9.93809220128064 9.6195324114345 10.0306691693048 10.1146834805756 0.0761669341247647 0.0742269992118651 0.0806678383284982 0.0788908424361078 0.0742372478347528 0.0825650168690323 0.0784594750462397 0.075377671285394 0.0849535116578344 0.0734294981081461 0.0761323550381356 0.0731206851693535 0.0756435406263006 0.0768923848279091 0.0732035153978538 0.0739335264912804 0.0783965256027118 0.0788569618932232 0.0733531944993033 1 1|0 -|/ 28142872 28144106 28143435.556 28142670 28146405 - gene protein_coding_gene FALSE TRUE AT1G74920.1 ALDH10A8 (Aldehyde dehydrogenase 10A8); 3-chloroallyl aldehyde dehydrogenase Arabidopsis thaliana similar to betaine aldehyde dehydrogenase Identical to Betaine-aldehyde dehydrogenase 1, chloroplast precursor (EC 1.2.1.8) (BADH) (Aldehyde dehydrogenase 10A8) (ALDH10A8) [Arabidopsis Thaliana] (GB:Q9S795;GB:Q56ZQ8); similar to ALDH10A9 (Aldehyde dehydrogenase 10A9), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G48170.1); similar to betaine-aldehyde dehydrogenase [Chorispora bungeana] (GB:AAV67891.2); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE82378.1); similar to betaine-aldehyde dehydrogenase [Gossypium hirsutum] (GB:AAR23816.2); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.208718158374050 -2.28398667976814 0.0434763566431341 1 1.51369731558318 19.9980015875441 -0.208718158374050 0.0696790865510545
AT3G61910_at 1.97200454051715 1.57046560653917 2.05553628068730 1.88189597773319 1.77834736008737 1.95056237431675 1.97395752384522 1.74468693476492 2.18554457922532 1.81675448577326 2.44057079875705 2.50183013503339 2.37399546102896 2.09261812574905 2.46873112714028 2.15545440827729 2.50623296344038 2.09419115506501 1.94806419082818 0.212397146685086 0.206212733246056 0.203759415887596 0.2061234684973 0.207465910814801 0.201711775894957 0.206984090313687 0.202656759635233 0.203413239424224 0.204781978829417 0.200441632467542 0.203731810586789 0.213088311760381 0.203292057103913 0.203444626651959 0.200411488477692 0.200411488477692 0.210232217946717 0.203874380438767 3 3 - 22940182 22940718 22940404.455 22939981 22941417 - gene protein_coding_gene FALSE TRUE AT3G61910.1 NST2 (NAC SECONDARY WALL THICKENING PROMOTING FACTOR2); transcription factor NAC transcription factor NST2. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls. NST2 promoter was particularly strong in anther tissue. Identical to NAC domain-containing protein 66 (ANAC066) (NAC SECONDARY WALL THICKENING PROMOTING FACTOR 2) (NST2) [Arabidopsis Thaliana] (GB:Q9M274;GB:Q8LGE1); similar to NST1 (NAC SECONDARY WALL THICKENING PROMOTING FACTOR1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46770.1); similar to Os08g0115800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060852.1); similar to putative OsNAC7 protein [Oryza sativa (japonica cultivar-group)] (GB:BAA84803.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.223527724996025 2.28395625426794 0.0434786729226759 1 1.51365133816287 4.02226079502156 0.223527724996025 0.0905205730416428
AT2G26910_at 9.7056936065856 9.71825738278384 9.05540159929193 9.05381009047788 10.0466057140880 9.92827169954795 9.97826511384554 9.87260953061987 10.3262459948130 10.10524808138 10.5064983257540 10.3497798840948 10.1017859280359 10.0737398758117 10.1683049515288 9.94870425810886 9.62149093561777 10.2067636429516 10.1755629584424 0.0959480208939327 0.0934399535995307 0.096072397455132 0.0974116864562435 0.0928182437935302 0.0964018919558372 0.0955431758358559 0.0928137792109898 0.0964679556668613 0.0979611072940517 0.0904194183350251 0.0904194183350251 0.0956727120410004 0.0981225791713887 0.0924856890249156 0.0932642334872537 0.101384582244378 0.0961137187810768 0.0952929344463911 2 2 + 11494235 11494903 11494557.818 11488701 11495264 + gene protein_coding_gene FALSE TRUE AT2G26910.1 ATPDR4/PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances Identical to Probable pleiotropic drug resistance protein 4 (PDR4) [Arabidopsis Thaliana] (GB:O81016); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to ATPDR11/PDR11 (PLEIOTROPIC DRUG RESISTANCE 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G66950.1); similar to ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15210.1); similar to Pleiotropic drug resistance protein 6 (GB:Q8GU87); similar to Pleiotropic drug resistance protein 4 (GB:Q8GU89); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59571.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.18895150112389 -2.28384308346453 0.043487289607486 1 1.51348032191081 19.8321072522133 -0.18895150112389 0.02754039931783
AT4G32120_at 6.41042677017486 6.63375059523586 6.02622051973134 6.29926095407261 7.2880283183638 6.69318537582882 6.92817552263106 6.17262333859535 4.79818706853259 5.64292461467778 5.98487176650036 5.93119038135471 5.56110010255736 6.06415714276052 5.659299840641 5.92967728633146 6.18152544999109 5.16134619921276 5.26344806296936 0.210762694826196 0.20875647286609 0.209096542812469 0.205746646342172 0.205746646342172 0.210310424552944 0.208898928253996 0.210908202965225 0.222350213326993 0.207157632477295 0.205746646342172 0.205746646342172 0.213323310456099 0.205746646342172 0.2083329081137 0.205746646342172 0.211207000133519 0.218745578841961 0.210765858406008 4 4|0 -|/ 15517443 15518549 15517903 15516790 15519861 - gene protein_coding_gene FALSE TRUE AT4G32120.1 galactosyltransferase family protein similar to transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT2G25300.1); similar to Os06g0176200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056954.1); similar to beta 1,3-glycosyltransferase-like protein II [Oryza sativa] (GB:CAD44838.2); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.307361253890974 2.28358870765035 0.0435066634678005 1 1.51309593477273 12.0784585592768 0.307361253890974 0.177254092756320
AT1G05430_at 7.39326450985674 7.61047560517302 7.65978803327008 7.53609387196846 7.76073282604672 7.488806483012 8.02110533636317 7.1432528096114 6.71651814041794 7.00837791522092 7.50782065247641 7.30821957495577 6.9180200382413 7.21525704425616 7.41979366503472 7.5133907114986 7.49591031914702 7.30270261190726 6.7260618255441 0.207157118124244 0.202203671801514 0.217048610560869 0.206555552292352 0.213401858165359 0.215966421961738 0.203350555346668 0.209679898916080 0.221733498528128 0.213904929892928 0.204235245676857 0.212571685725717 0.214229108294215 0.221554797956649 0.2048140642762 0.208538587991843 0.217215852363778 0.218369907671502 0.214152838400211 1 1|0 -|/ 1594241 1595013 1594651.3 1594056 1595817 - gene protein_coding_gene FALSE TRUE AT1G05430.1 similar to hypothetical protein MtrDRAFT_AC135320g13v1 [Medicago truncatula] (GB:ABE82965.1) 0.293742052559283 2.28318945440077 0.043537088290556 1 1.51249264803440 14.6527525782047 0.293742052559283 0.164815820917094
AT1G80530_at 6.21109353327632 7.05087039083734 6.11579940936116 6.61132526570885 7.19285149348421 6.84060179555686 7.24140715929376 7.1491042588653 6.18113395240752 5.39294511951347 6.71386161476091 6.93836689564377 6.43247858237196 6.35378780738325 6.90056491868523 6.47889048420634 6.72263036425933 5.93768713611668 5.573809195295 0.241042993481438 0.232608246332661 0.235616556905146 0.235826866660943 0.232705720385292 0.244521616832151 0.231303538991188 0.239793262102864 0.25865989277493 0.249530684657259 0.231303538991188 0.23136414770571 0.234372837656787 0.25286069508818 0.243325593553396 0.234084305353459 0.233362257157755 0.241155721942542 0.245751461304558 1 1 - 30283148 30283721 30283400 30282844 30285216 - gene protein_coding_gene FALSE TRUE AT1G80530.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to nodulin-like protein [Poncirus trifoliata] (GB:AAN62343.1); similar to Nodulin-like [Medicago truncatula] (GB:ABE93291.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) 0.310423187574682 2.28270508140845 0.0435740271032136 1 1.51176078253193 12.9395047788815 0.310423187574682 0.180124112875868
AT4G30000_at 2.67626207345524 2.78177582334837 2.34510665677366 2.20177698011693 2.54610966963364 2.82307400175952 2.73629687104884 2.93213431162120 2.76431129580926 2.81388837522828 2.71307446443385 3.17648602534573 2.88438552645671 2.80719242586011 3.00526511208888 2.70920123534526 2.53065818643927 2.49007927537288 3.12083065531419 0.197138297703309 0.193111427115986 0.195903387303701 0.196067700312831 0.206659717742349 0.193111427115986 0.202138623284616 0.203924413185848 0.202619737707650 0.193111427115986 0.199114560274872 0.19520753609133 0.193598714687320 0.193668524992148 0.200517794594808 0.198000665802474 0.206815683580414 0.199458165875417 0.202172581799333 4 4 - 14670574 14671045 14670785.545 14670162 14672675 - gene protein_coding_gene FALSE TRUE AT4G30000.1 dihydropterin pyrophosphokinase, putative / dihydropteroate synthase, putative / DHPS, putative similar to dihydropteroate synthase [Arabidopsis thaliana] (TAIR:AT1G69190.1); similar to putative 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase [Oryza sativa (japonica cultivar-group)] (GB:BAD30585.1); similar to dihydropterin pyrophosphokinase /dihydropteroate synthase [Pisum sativum] (GB:CAA69903.1); similar to Os07g0618500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060287.1); contains InterPro domain Dihydropteroate synthase, DHPS; (InterPro:IPR000489); contains InterPro domain Bifunctional folic acid synthesis protein; (InterPro:IPR011354); contains InterPro domain Dihydropteroate synthase-like; (InterPro:IPR011005); contains InterPro domain Dihydropteroate synthase; (InterPro:IPR006390); contains InterPro domain 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; (InterPro:IPR000550) -0.206367218415107 -2.28151245087379 0.0436651070402238 1 1.50995896112656 5.47492682690388 -0.206367218415107 0.0662910261788681
AT3G21670_at 9.55799845422538 9.85402025798733 10.6814137979074 10.9135907869798 11.1524479763070 10.9492042189231 11.4081382005673 11.5928948921292 10.9510213760836 11.0919706087694 10.9056458521354 10.5773720915619 11.5244039987924 11.0745412733949 10.6031306732066 11.5019554595076 11.6934953301947 11.1959543831954 11.0280072329727 0.0857323184461128 0.083029773102065 0.083831386878752 0.0844080251664992 0.0831501978823816 0.0878666460840162 0.0871979769033653 0.08473584241933 0.0954446059487156 0.0820860393013298 0.0849699084172108 0.084996116614215 0.0862298997003657 0.0865751100474544 0.0837812048967055 0.081634567651518 0.0828714052053987 0.0824773933037232 0.081634567651518 3 3 - 7627103 7627434 7627295 7626764 7629158 - gene protein_coding_gene FALSE TRUE AT3G21670.1 nitrate transporter (NTP3) similar to nitrate transporter (NTP2) [Arabidopsis thaliana] (TAIR:AT2G26690.1); similar to Os02g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047240.1); similar to nitrate transporter [Prunus persica] (GB:BAC81420.1); similar to nitrate transporter [Prunus persica] (GB:BAD22820.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.215898610304386 2.28150318860299 0.043665815106664 1 1.50994496877793 21.8428279674736 0.215898610304386 0.0806104381119816
AT1G08660_at 6.15963763435775 6.46698719404647 5.93402178003578 6.19632675782302 6.7184718907215 5.9663645512666 6.11686480849108 6.20699968975939 5.37912591711427 6.3421657377525 6.94119438519557 6.62254757117528 6.05970887419717 6.62890180191544 6.83458874245693 6.75617604402858 6.08878878431634 5.72685355503118 5.8910665998262 0.232192179226999 0.230355632457057 0.230782745284134 0.233258843280427 0.227432930102643 0.239280952625203 0.226304611672611 0.235324392095284 0.23765715630625 0.227219744996407 0.229963974364474 0.222852930421424 0.233469198547685 0.224372778576250 0.230212951765073 0.222386457485438 0.244675526497798 0.24502538801024 0.231235943072832 1 1|0 -|/ 2757613 2758665 2758068.667 2757044 2759797 - gene protein_coding_gene FALSE TRUE AT1G08660.1|AT1G08660.2 glycosyl transferase family 29 protein / sialyltransferase family protein similar to glycosyl transferase family 29 protein / sialyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G48820.1); similar to sialyltransferase like protein [Aquile (GB:CAJ44461.1); similar to sialyltransferase-like protein [Solanum lycopersicum] (GB:CAJ15147.2); similar to sialyltransferase-like protein [Solanum tuberosum] (GB:CAJ15155.1); contains InterPro domain Glycosyl transferase, family 29; (InterPro:IPR001675)|similar to glycosyl transferase family 29 protein / sialyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G48820.1); similar to sialyltransferase-like protein [Solanum tuberosum] (GB:CAJ15155.1); contains InterPro domain Glycosyl transferase, family 29; (InterPro:IPR001675) 0.276366399094978 2.28094885303719 0.0437082121446596 1 1.50910757342331 12.3847748156563 0.276366399094978 0.148570971581346
AT3G09760_at 3.73944106197563 4.20379973972755 3.10302979017258 3.73203975378871 4.77419804224342 3.29672375840401 4.17705037994394 4.1787650134888 3.63350421733083 3.92866045358617 3.40096561108005 3.22255379926509 3.51028378439223 3.75019229672999 2.91206780018859 3.36840512514261 2.80359394436179 2.84810993915042 3.71784785315522 0.236714156326755 0.246285516900764 0.250749492309621 0.238637055350399 0.238910080325179 0.260466049169277 0.232858821759800 0.240546204526415 0.238440753558074 0.235840290614208 0.235076411743486 0.232154311556518 0.235711922183264 0.234034926046431 0.238227377807759 0.232154311556518 0.245015697801219 0.248917932283708 0.232154311556518 3 3|0 -|/ 2993115 2993818 2993448.111 2992659 2995639 - gene protein_coding_gene FALSE TRUE AT3G09760.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03180.1); similar to Os06g0677300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058355.1); similar to zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45521.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.440624424891847 -2.28061219643268 0.0437339798591965 1 1.50859903862309 7.39414379858287 -0.440624424891847 0.289276579402307
AT3G53790_at 1.11649394683786 1.29985400986785 1.72520985536480 1.40535036350355 1.38673188175436 1.64948398038331 1.72364852099128 1.10029026471017 1.77126825386652 1.17254945127173 1.99248724026579 1.76108876188576 2.02041053522907 1.49799101579269 1.42337435696422 1.70899532303435 1.89871649578159 1.41357591959433 1.32938339842568 0.219590210557905 0.213733880523519 0.223375441937405 0.225217117123368 0.214861345683577 0.226702545163137 0.225513571010737 0.216381116038866 0.209934591660308 0.216432912828099 0.216930408001092 0.211610384639842 0.210324330763101 0.211740567348574 0.215180100901606 0.210449392691235 0.21859855588378 0.218361166747577 0.217463491360389 3 3 + 19940422 19941220 19940863.182 19939456 19941245 + gene protein_coding_gene FALSE TRUE AT3G53790.1 TRFL4 (TRF-LIKE 4); DNA binding Arabidopsis thaliana telomere-binding protein, putative (At3g53790) similar to TRFL2 (TRF-LIKE 2), DNA binding [Arabidopsis thaliana] (TAIR:AT1G07540.1); similar to initiator binding protein [Zea mays] (GB:CAA55691.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.260900961431774 2.27945817316113 0.0438224198620417 1 1.50685599821397 2.9953730148882 0.260900961431774 0.133324573263097
AT2G43280_at 4.70773627038089 5.08804475428262 5.00639281924738 4.95785396454688 5.41206166186304 5.8845022903374 5.0735918815993 5.01884845798039 4.10588700933498 4.64793808973686 5.17000844554123 4.35434767221471 4.59913127493466 4.65856422962124 4.30702861036211 5.09055763324782 4.5432172583156 3.69072590840602 4.51851707613174 0.205822802483923 0.205189250754307 0.203565696922607 0.202811911593622 0.204528456860998 0.21431052557943 0.207309238281424 0.206719407594238 0.206949301024020 0.204033022464848 0.206978713553648 0.209222210368435 0.207798963168506 0.209348073137842 0.204224185009119 0.203789230408784 0.205566986271719 0.212574959047120 0.206179586887709 2 2|0 +|/ 17997358 17997887 17997546.3 17996775 17998099 + gene protein_coding_gene FALSE TRUE AT2G43280.1 far-red impaired responsive family protein / FAR1 family protein similar to far-red impaired responsive family protein / FAR1 family protein [Arabidopsis thaliana] (TAIR:AT3G07500.1); similar to FAR1 [Medicago truncatula] (GB:ABD33394.1); contains InterPro domain FAR1; (InterPro:IPR004330) 0.235365456808555 2.27807321579396 0.0439287850103113 1 1.50476448831352 9.63153485627054 0.235365456808555 0.105717499707719
AT3G25560_at 4.51517796761094 4.81436885151106 5.09037845903249 5.16015325496754 5.39096369557142 5.14975365254934 6.83065403684185 7.14257116072882 5.36786835272191 7.08739256286244 6.7353058741804 6.92173571030012 5.99956011030999 6.40824035538039 6.24265931024965 6.70276581646496 6.93233334474835 6.90438826345282 6.79804309590398 0.210276206165263 0.199632638306272 0.205853011587826 0.196020874222725 0.198499688829143 0.197278650201886 0.204661072002434 0.199301829594751 0.213524889606978 0.201127927786894 0.194183906640209 0.207230889229514 0.200524365425043 0.210232947575515 0.201279068986581 0.194738652615265 0.214918652833396 0.202024078556280 0.198135880079954 3 3 - 9280937 9281579 9281281.636 9280750 9283925 - gene protein_coding_gene FALSE TRUE AT3G25560.1|AT3G25560.2 NIK2 (NSP-INTERACTING KINASE 2); protein kinase similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to NIK3 (NSP-INTERACTING KINASE 3), kinase [Arabidopsis thaliana] (TAIR:AT1G60800.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96908.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.219887572168290 -2.27806931208316 0.0439290851672911 1 1.50475859359401 12.0235734358343 -0.219887572168290 0.0865028038462286
AT1G11430_at 9.38710191728108 9.66848460376336 9.09035724219535 9.27564441001458 9.57106198078302 9.00217656136761 9.76175933542575 9.83505974824205 9.24701395273804 9.64170605570785 9.07097126490383 9.54422608272197 9.43965584126298 9.20779586116388 9.79842149392844 9.35491487211407 9.34152560367853 9.32788345572831 9.44516963585998 0.107607913737200 0.110045635481554 0.122415026625429 0.111231580951326 0.111950645587078 0.120526258687752 0.112271906822769 0.118133911765247 0.121658386593882 0.110892201837659 0.118561009662860 0.112886721168869 0.111319042632272 0.109665831064355 0.111465227576125 0.110963597101218 0.118416847374765 0.110690321359499 0.110604196151491 1 1|0 +|/ 3847420 3848909 3848199.1 3847243 3849162 + gene protein_coding_gene FALSE TRUE AT1G11430.1 plastid developmental protein DAG, putative similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT3G06790.2); similar to DAG protein, chloroplast precursor (GB:Q38732); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.243623462292729 -2.27797381453714 0.0439364286043326 1 1.50461439036056 18.8641078203206 -0.243623462292729 0.115118574514847
AT1G76150_at 9.69802323859514 9.69506341400453 9.86827039661893 9.87158799700736 9.79577978849152 9.54763076695581 9.03231202143239 9.11588370587385 8.60066829152606 8.63918367577687 8.1188459683107 8.37216636683069 8.79753490350165 8.66267815464607 8.40378597531967 8.71964939948936 8.70028365846404 8.76010291139874 8.4478532159161 0.145141011777843 0.149062695754342 0.144457215187068 0.149339776623210 0.151013873330951 0.147332231555897 0.141408654619786 0.158070338439867 0.179443026949357 0.147213586083963 0.157518935747389 0.145718806897349 0.143738055585568 0.140677098748675 0.147914689384379 0.142663567581236 0.156136233219368 0.146744001296592 0.151007974175598 1 1 - 28580132 28581757 28580807.091 28579634 28582594 - gene protein_coding_gene FALSE TRUE AT1G76150.1 maoC-like dehydratase domain-containing protein similar to Os09g0544900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063833.1); similar to hypothetical protein LOC613082 [Xenopus tropicalis] (GB:NP_001027490.1); contains InterPro domain MaoC-like dehydratase; (InterPro:IPR002539); contains InterPro domain Fatty acid synthase; (InterPro:IPR003965) 0.194904582565349 2.27789252679285 0.043942680286468 1 1.50449164558515 18.1427935719482 0.194904582565349 0.0453198183509584
AT2G32970_at 5.39858120043648 6.03400081651565 4.74733721356535 4.64764363050076 6.31161778744359 5.43241139524092 5.48853443017546 6.00341510329727 6.66420506897561 5.7483052466201 5.94345776881689 6.27096343362905 5.4939710699846 6.00008593255027 5.66592967607606 5.99981750685281 5.10369391988463 5.95416054872381 5.71214830385591 0.298889935920478 0.279272430543714 0.291041566467457 0.298956965426736 0.279272430543714 0.292929434217687 0.307058165260523 0.287748498994424 0.293737021055721 0.280167600071356 0.289321520934915 0.284043880021288 0.293219246039789 0.287031443004965 0.284403764057584 0.282238335769089 0.305874108508921 0.279272430543714 0.282204345309016 2 2|0 -|/ 13999329 13999688 13999515.625 13998661 14002826 - gene protein_coding_gene FALSE TRUE AT2G32970.1 similar to Os02g0771800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048261.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16855.1) -0.341961636002170 -2.27725723620240 0.0439915687409964 1 1.50353239798013 11.4307241247546 -0.341961636002170 0.20851492000748
AT2G18200_at 1.28332171125950 1.78353323810310 1.61492437967801 1.84135412708870 1.32883565250681 1.39013941675932 1.61985297642365 2.05098260653808 2.21004731815436 1.90750743516927 1.53228502908039 1.48271044586316 1.69312273625089 1.92482686457754 1.62896935247595 1.57395778891924 1.81155707769926 1.92927383322671 2.04654364070167 0.215984001692216 0.215532550437089 0.213725267067109 0.213725267067109 0.219517295140717 0.21875205078941 0.215461654071589 0.213905507401445 0.220808961972972 0.2183852291718 0.214435252564940 0.216768295128597 0.214873765160713 0.226018696894822 0.215579054156691 0.220570000401904 0.218911056699042 0.218333994496713 0.216147125320529 2 2 - 7931358 7931628 7931523.273 7931349 7931741 - gene protein_coding_gene FALSE TRUE AT2G18200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18210.1) -0.249110406368165 -2.27663647288380 0.0440393898046442 1 1.50259515998643 3.49001169138802 -0.249110406368165 0.121275754170966
AT2G24410_at 0.782776683951112 1.02031809344546 1.27293107851283 0.94531711140034 0.805750572686936 1.18982929886641 0.452143786152153 1.09157970085862 0.686747486982313 0.9095828663641 1.1677051622104 1.13001675087961 1.12015803371153 1.33168561559226 0.733023180212601 1.03047229917366 1.04984650954663 1.02465493467192 0.629911914373298 0.174058685420211 0.180889436919533 0.17101831427887 0.170364468829473 0.17683821733831 0.176361298633207 0.180250852395774 0.176170567994614 0.174601291728969 0.178766247939087 0.170233390143720 0.173761624252495 0.174468286748852 0.175341952756632 0.177907070139747 0.17079403068523 0.175876065810448 0.173671816781001 0.170655995113517 2 2 - 10386251 10386450 10386339.636 10386239 10386487 - gene protein_coding_gene FALSE TRUE AT2G24410.1 similar to DDL (DAWDLE) [Arabidopsis thaliana] (TAIR:AT3G20550.1); similar to hypothetical protein MtrDRAFT_AC147434g34v2 [Medicago truncatula] (GB:ABE88146.1); contains domain NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 (PTHR23308) 0.274058502054023 2.27637690293220 0.0440594008359304 1 1.50220327910285 1.85284382406243 0.274058502054023 0.146857208854266
AT1G21590_at 9.24483638221321 9.4420193151792 8.98426594027983 8.7909628618776 9.29983086079016 8.88690138176264 9.1840269163682 9.24746693302428 8.97666719554259 8.85327249153793 8.59488067910196 9.11838316565391 8.92821123989924 8.66374905020463 8.61494965102436 8.93587344288748 8.67558341084892 8.54418077124439 8.89980383963083 0.123256141552002 0.132149101984034 0.128433169886566 0.131951084517575 0.127606472470364 0.133823196524554 0.125965057801813 0.124899407874512 0.130802910805260 0.119819172948461 0.126099467713136 0.122864082121701 0.123037289013967 0.130842154600083 0.131652678758531 0.122813561676831 0.141052879751258 0.129164269729 0.127873785568682 1 1 - 7566605 7567459 7566936.545 7566221 7569890 - gene protein_coding_gene FALSE TRUE AT1G21590.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G77280.1); similar to At5g63940 [Oryza sativa (japonica cultivar-group)] (GB:AAX96058.1); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.219767604032164 -2.27558408395119 0.0441205758229169 1 1.50100641520315 17.9697342915678 -0.219767604032164 0.0866626551254864
AT3G13845_at 5.85077956534932 5.84616625028985 5.43005959886733 5.1848379004972 5.37167719567641 5.92735674198774 6.16526023145240 6.07803075285859 5.80958037015242 5.40339055049797 5.90572930919648 5.98301084230449 5.1321428737049 5.6935418198444 5.76062335036534 5.3358616826312 5.335990433316 5.29305632503172 5.34516302143091 0.22276226559881 0.218493791163222 0.221327337613726 0.220534823094159 0.221020526440580 0.239034135454652 0.218226075204459 0.217120539334897 0.216606157483698 0.218381195774521 0.212445258795345 0.216240780048695 0.223899778351700 0.226520621534133 0.228923336841277 0.215833943036425 0.229616876448026 0.232231305866650 0.218134916952390 3 3 - 4557547 4557721 4557634.909 4557332 4558586 - gene protein_coding_gene FALSE TRUE AT3G13845.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79767.1) -0.235479870937409 -2.27524631835006 0.0441466630885296 1 1.50049655039841 11.2689573097439 -0.235479870937409 0.106191805113666
AT3G44980_at 1.45419820776744 1.38592063659552 1.75870119834015 1.48682300078342 1.12154747605346 1.2511402349347 1.08008509216065 1.16456584252569 1.32508842431078 1.62311677475390 1.64466670519977 1.37111217036599 1.6791755961243 1.90734502143452 1.23293452539351 1.57809208164761 1.59381220962263 2.08677134652562 1.16496991987685 0.214560374961288 0.214560374961288 0.214892914652959 0.214560374961288 0.214560374961288 0.214560374961288 0.216384660169666 0.227911349679039 0.228674599637986 0.217349418687308 0.227875069703384 0.214560374961288 0.221464207185522 0.240668722330054 0.228164461614805 0.216051679734052 0.229190035421625 0.218812237240927 0.219655532248235 3 0|3 /|+ 16452142 16453007 16452587.333 16452008 16453083 + gene protein_coding_gene FALSE TRUE AT3G44980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07215.1) 0.199520433412171 2.27453671891757 0.0442015172124695 1 1.49942546519655 2.84177125115501 0.199520433412171 0.055407460993018
AT2G04400_at 10.0499951350222 10.0598686860317 10.5755290398413 10.585275301279 9.58773461946835 9.2600682814216 9.22103564536841 9.14587351553209 8.76704535804011 8.84395076708133 8.73611787685666 9.09562723216794 8.71381464478999 8.85935990531155 8.51613547039244 8.8974402404586 8.63551765183904 8.73239144272723 8.6518898713971 0.128940205280911 0.130555658747522 0.135014583935748 0.131179645068808 0.131722558883532 0.132288309431655 0.132514491398851 0.123627400200109 0.132189642946372 0.126043749875261 0.132094339023915 0.124449917109430 0.12688308650552 0.121367043510911 0.127456251917262 0.126702669719210 0.135504475990581 0.133237489582314 0.130021882950946 2 2|0 +|/ 1532413 1533366 1532795.5 1531147 1533734 + gene protein_coding_gene FALSE TRUE AT2G04400.1 indole-3-glycerol phosphate synthase (IGPS) Identical to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS) [Arabidopsis Thaliana] (GB:P49572;GB:Q8LBV5;GB:Q9SJC9); similar to indole-3-glycerol phosphate synthase, putative [Arabidopsis thaliana] (TAIR:AT5G48220.1); similar to indole-3-glycerol phosphate synthase (GB:AAA60380.1); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Indole-3-glycerol phosphate synthase; (InterPro:IPR001468) 0.200981895454523 2.27386434638174 0.0442535540767504 1 1.49841066017765 18.5744704731160 0.200981895454523 0.0582264144831545
AT3G12800_at 9.55337475656274 9.6586593966882 9.9339521134824 9.86046669489651 9.68168498491014 9.5533613030852 9.64302013402552 9.71197018064652 7.99076459158276 8.940205224981 8.81236542283611 8.49819708232947 8.7470492451026 8.90476357789134 8.51954973372948 8.83713374017996 9.04082379775462 8.60949536889785 8.51448679351097 0.0967297443808016 0.0971724375221302 0.0963565835887258 0.098436991964704 0.0977576747255238 0.0991984157349912 0.096759048049109 0.0995228454292624 0.114521778730864 0.101853003420538 0.101631594097457 0.0951903142194296 0.101827738291764 0.099525142492882 0.101023529964961 0.0973459763593962 0.104438334338072 0.101379650395227 0.104754821333110 3 3|0 -|/ 4063492 4064734 4064141.632 4063330 4064829 - gene protein_coding_gene FALSE TRUE AT3G12800.1 short-chain dehydrogenase/reductase (SDR) family protein Identical to Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34) [Arabidopsis Thaliana] (GB:Q9LTV6;GB:Q67Y37;GB:Q680G7); similar to D2,D4-dienoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G07640.1); similar to Os04g0614000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053860.1); similar to MGC82265 protein [Xenopus laevis] (GB:AAH71136.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.189981766589044 2.27377094156899 0.0442607876063931 1 1.49826969210825 18.3135567535947 0.189981766589044 0.0336038286055100
AT2G16005_at 0.690393617806465 1.22837581126465 0.678618183394647 1.17995491663952 1.25294201811597 1.19529164111972 0.97164971620129 1.26692757000744 1.43784094469931 1.89454738656061 0.874524815315187 1.27790593542498 1.17054419415610 1.21451991934937 1.03049683528353 1.16247043462112 0.382710124743043 1.77881399826921 1.70025692672956 0.199444154463225 0.212848374542661 0.208148701757809 0.209341919144235 0.198293595535809 0.202181521718651 0.211367665824210 0.200499619776070 0.204479859395488 0.197370294166554 0.202192751431488 0.199326337344123 0.202053758937973 0.200501541646457 0.202836820949469 0.198715406261066 0.218089751575202 0.197370294166554 0.204090341358791 2 2 - 6966451 6967130 6966745.909 6966232 6967279 - gene protein_coding_gene FALSE TRUE AT2G16005.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein similar to MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G44100.1); similar to Os03g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051500.1); similar to Os07g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058934.1); similar to E1 protein and Def2/Der2 allergen [Medicago truncatula] (GB:ABE78146.1); contains InterPro domain E1 protein and Def2/Der2 allergen; (InterPro:IPR003172) -0.264342563093502 -2.27376083122269 0.0442615706480631 1 1.49825443350891 2.45254253505628 -0.264342563093502 0.137496906037078
AT3G25690_at 11.2188682296262 11.3841431115688 11.3413445725510 11.3566940946633 11.6114735955473 11.5570793301205 11.6491503393134 11.7492078859285 11.6438410960343 11.8094529252135 11.3934406750858 11.1633682131968 11.5132826417458 11.3770759766358 11.0721569461221 11.7736250217904 11.4458030029382 11.5295955670331 11.8135538129890 0.0812137762506658 0.0686066003278062 0.0706027039374612 0.0696888049686933 0.0694504767921972 0.0712479811237833 0.072057671154407 0.0739352550145717 0.0788298224430667 0.0700493746596706 0.0711449206500128 0.0716725660814198 0.0701503066041677 0.0745679217707917 0.0742442322771958 0.0697781051328305 0.0766938750009495 0.0690162028932263 0.0692762744802079 3 0|3 /|+ 9358165 9358737 9358461.75 9355076 9359136 + gene protein_coding_gene FALSE TRUE AT3G25690.1 CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) actin binding protein required for normal chloroplast positioning similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT4G18570.1); similar to Os12g0105300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065931.1); similar to unnamed protein product; contains similarity to pherophorin gene_id:T5M7.14-related [Medicago truncatula] (GB:ABE90672.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.190383466282872 -2.27353684019859 0.0442789220678466 1 1.49791638985630 23.0655748700719 -0.190383466282872 0.0348358836982328
AT3G57600_at 2.40668780418691 2.70225526284576 1.53988607386631 1.80586416878267 2.28378453853715 1.89860326882145 2.23853328783912 2.45853220583378 1.48698940342391 2.23519808051748 2.11387058731964 2.26477032432603 2.02817454872992 1.90450232958386 2.05169865683528 1.76417569736578 1.62038261033903 2.26556982936151 1.97032657810494 0.240848382341951 0.240848382341951 0.245035754542012 0.241884300640943 0.240848382341951 0.247987745890511 0.240848382341951 0.240848382341951 0.2500695717119 0.241352761592240 0.240848382341951 0.245634909016204 0.245818232299324 0.246641311805479 0.240848382341951 0.240848382341951 0.240848382341951 0.240848382341951 0.248707407729366 3 3 + 21344078 21344613 21344380.455 21343760 21344840 + gene protein_coding_gene FALSE TRUE AT3G57600.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. Identical to Dehydration-responsive element-binding protein 2F (DREB2F protein) (DREB2F) [Arabidopsis Thaliana] (GB:Q9SVX5); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G18450.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE93777.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.232664621020321 -2.27351140758318 0.0442808926138468 1 1.49787800797114 4.11634220650485 -0.232664621020321 0.103090132320052
AT1G65810_at 1.44146942013871 1.66260653586228 1.72990860212909 2.13437857890612 1.41683336714062 1.82300136060290 1.85806601383027 1.81060390949188 2.17615146105822 1.87315193951458 1.48106156104749 1.61829753852247 1.5985446815246 1.54293261843491 1.37119354016099 1.63441493586744 1.08331335279912 1.71530248599124 2.12993122222890 0.203319176599285 0.21115064187591 0.212064725413851 0.20616786566908 0.207067456999084 0.213112169280538 0.205439027854537 0.210682208897343 0.208965577340870 0.209680781618976 0.207312377982278 0.212551085458555 0.207407967925708 0.203319176599285 0.209872872328731 0.208969784011355 0.228196429287403 0.218415050312472 0.20419888353721 1 1 - 24480719 24481401 24481029 24480706 24484391 - gene protein_coding_gene FALSE TRUE AT1G65810.1 tRNA-splicing endonuclease positive effector-related similar to tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana] (TAIR:AT1G65780.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAM76346.1); similar to Os04g0599600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053752.1); similar to OSJNBa0088A01.10 [Oryza sativa (japonica cultivar-group)] (GB:CAD41371.2); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain no description (G3D.3.40.50.300); contains domain SPLICING ENDONUCLEASE POSITIVE EFFECTOR SEN1-RELATED (PTHR10887:SF22); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.235634138804900 -2.27302658145348 0.0443184735899497 1 1.49714635154994 3.51729720529312 -0.235634138804900 0.106639125404578
AT3G14900_at 3.46871524262383 2.79512552821158 3.30965958190288 2.75519510994707 2.45579764218245 2.53574494630064 2.93598741323379 2.83241927564717 3.15842218820269 3.24344934697924 2.95675551727364 2.48548821787141 2.59474035159443 2.51138937656566 3.07819449962162 2.61421764872554 2.81876764599407 2.99992732320234 2.81615050349518 0.191785490818027 0.190848811689015 0.191954768068216 0.188258179684473 0.188959514909628 0.193070884188213 0.189361123935026 0.188249280047458 0.195452098577850 0.191759450593919 0.190288990181254 0.189809590180259 0.194021115106407 0.196071860877063 0.191718687690480 0.186421256627260 0.194287471666920 0.190871592942180 0.187106816270125 3 3 - 5013451 5013869 5013657.091 5013298 5015299 - gene protein_coding_gene FALSE TRUE AT3G14900.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17160.1); similar to Os04g0497900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053209.1); similar to OSIGBa0092E01.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67517.1); similar to hypothetical protein [Plasmodium falciparum 3D7] (GB:NP_703434.1); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2 (PTHR12839:SF1); contains domain FAMILY NOT NAMED (PTHR12839) -0.279600742566056 -2.27278726846843 0.0443370350834098 1 1.49678521836027 5.8011351352554 -0.279600742566056 0.152668338379232
AT1G09795_at 7.96086836633775 7.74657330068253 7.86290796125266 7.38294364505869 7.90022369061386 7.78819942272856 7.98425878615779 7.7257980507065 7.24075806652534 7.2761291340196 7.8170821566757 7.92060682508843 7.67637827688533 7.5245885788023 7.97778752243294 7.85623636125907 8.02367774454606 7.71666661261342 7.1671045670729 0.155564696135389 0.162791043901071 0.166428081144211 0.168907797019485 0.155127741536906 0.162459883060899 0.155843006993845 0.163769210858760 0.164505561026891 0.176323790702531 0.159292592452303 0.159542868504809 0.156132488063454 0.161134311516486 0.157804095711674 0.156192983571935 0.159023050428792 0.164677297035751 0.181059650878375 1 1|0 +|/ 3175386 3176663 3176071.375 3173536 3176912 + gene protein_coding_gene FALSE TRUE AT1G09795.1 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis similar to ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE) [Arabidopsis thaliana] (TAIR:AT1G58080.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum montanum] (GB:AAT74598.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum] (GB:AAT74590.1); similar to ATP phosphoribosyltransferase [Thlaspi goesingense] (GB:AAB88880.1); contains InterPro domain Histidine biosynthesis HisG: ATP phosphoribosyltransferase; (InterPro:IPR001348); contains InterPro domain Histidine biosynthesis HisG, C-terminal; (InterPro:IPR013115) 0.232662403928794 2.27256911132638 0.0443539622104638 1 1.49645601981040 15.3150342857725 0.232662403928794 0.103202046294679
AT1G73050_at 0.842126134568569 0.945532955440693 1.19995157353714 1.15843278329493 1.08179341373271 1.36050378627491 0.981356595550234 1.00686534654216 1.02465464757488 1.20196674281212 1.28096981233275 1.05168460746529 1.16160392096167 0.353401515356327 0.952802646141059 0.636275726236748 1.33704057625539 1.48568362078547 0.453426973939479 0.211044089841206 0.216915975646897 0.224729531006826 0.216284361590192 0.210934846958112 0.216196990466926 0.212031851705725 0.211262441740379 0.214324659920992 0.214606916924407 0.223021858471415 0.212044772064955 0.222086182324386 0.220343798625453 0.214330949124162 0.218265741186269 0.221182305070779 0.213850502905118 0.218912514100035 1 1 - 27480366 27480882 27480665.182 27480226 27482195 - gene protein_coding_gene FALSE TRUE AT1G73050.1 (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12570.1); similar to GMC oxidoreductase [Medicago truncatula] (GB:ABE86333.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) 0.197641739800426 2.27232371941646 0.0443730099498893 1 1.49608573501226 2.03496145260133 0.197641739800426 0.0521313922411224
AT4G28570_at 8.17531105841845 7.99978990831879 8.03738690296489 8.22925155478786 7.8587402342539 7.62271483582707 7.29747765121909 7.11751024030813 7.10507377287785 7.25330949902375 5.55296708486941 6.08465232482066 6.10837791506856 6.8050660880276 5.90683622405495 6.79827419823479 6.78734794696132 6.52624856664914 6.714220334471 0.223857679395346 0.221527672155959 0.223731574944963 0.219566911326703 0.223582913830876 0.223101421264186 0.226525396021083 0.220686923391407 0.232682856818054 0.219566911326703 0.223185404781028 0.219566911326703 0.222798882661744 0.228638872055994 0.238936005416738 0.219566911326703 0.231184037407595 0.224880775862483 0.220261369721131 4 4 + 14121340 14121863 14121615.091 14119431 14122093 + gene protein_coding_gene FALSE TRUE AT4G28570.1 alcohol oxidase-related similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT1G03990.1); similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT3G23410.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31024.1); similar to Os02g0621800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047464.1); similar to Os10g0474100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064836.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953); contains InterPro domain Long-chain fatty alcohol dehydrogenase; (InterPro:IPR012400) -0.206739370573042 -2.27194470632186 0.0444024450534216 1 1.49551384494084 14.4649840461173 -0.206739370573042 0.068288865023615
AT3G20860_at 1.76389343539262 1.63487486721772 1.27494619237911 2.1609562409211 1.07631880235926 1.11318104424348 1.47046105237454 1.46093299628704 2.89424378212148 2.28013273561247 2.23630864133857 2.34689857842923 1.47238279884128 2.30146928364965 2.58917629650904 2.12638501047967 1.32773923673617 2.22111743302901 2.22155926738295 0.196221311242906 0.195644535170774 0.199141696382112 0.197715505053849 0.192360424964779 0.19593516849527 0.196644510363834 0.199076239354658 0.205951244921065 0.207552887506096 0.196311363490865 0.209528320424306 0.194543715980910 0.199165316628951 0.202117168291550 0.194032537290009 0.195916416466710 0.193263732553724 0.198428334486567 3 0|3 /|+ 7307801 7308366 7308084.444 7306153 7308440 + gene protein_coding_gene FALSE TRUE AT3G20860.1 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT3G44200.1); similar to serine/threonine-protein kinase Nek4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17425.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.281908643168983 -2.2711225471287 0.0444663605481195 1 1.49427339012845 3.7659438730213 -0.281908643168983 0.155085291272115
AT1G50940_at 7.78881761845321 7.77823980218964 7.94250779038267 7.8145447880383 8.11250811572842 8.00219418179548 7.56001570828342 7.47805913020185 6.66204665054994 7.31516805471924 6.77610568872844 6.82916462031644 6.92466093751614 7.10536857921188 6.90422038629028 7.21289687158748 7.11566906245172 6.71526673254582 6.68026306932759 0.183146681290602 0.181859260950002 0.192268066926935 0.187781064735938 0.192561523210188 0.19319679295645 0.192942952725458 0.193463194567985 0.201989035974868 0.183664885087050 0.178924841672274 0.178924841672274 0.188845665378197 0.195461372200063 0.179327471633298 0.184647948105915 0.198027408581083 0.193536419460039 0.186969597860086 1 1|0 -|/ 18881760 18882597 18882255.111 18881480 18883671 - gene protein_coding_gene FALSE TRUE AT1G50940.1 ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA); FAD binding / electron carrier Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness. similar to electron transfer flavoprotein alpha-subunit [Granulibacter bethesdensis CGDNIH1] (GB:YP_745914.1); similar to electron transfer flavoprotein, alpha subunit [Saccharophagus degradans 2-40] (GB:YP_527469.1); similar to Os03g0835400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051818.1); contains InterPro domain Electron transfer flavoprotein, alpha subunit; (InterPro:IPR001308); contains InterPro domain Electron transfer flavoprotein beta-subunit; (InterPro:IPR000049) 0.189374419584811 2.27068386199627 0.0445005005662699 1 1.49361156547153 14.7264834092324 0.189374419584811 0.0325473751693713
AT4G08160_at 1.98979546356986 2.06564668601061 2.20525309157349 2.04488091686605 1.81143627909289 1.89634119006715 2.46966106251331 2.16347538410955 2.70342865415711 2.63636478704935 2.46560110099683 2.32715452748148 2.59359097638293 2.69737049567367 2.22841988215219 2.76633602242709 2.67633527412559 3.29499310274391 3.22612128560224 0.188687094142642 0.192287431297096 0.186273929786154 0.181635850442466 0.184046334056151 0.185136759344232 0.190892990405389 0.183476354964376 0.183946894524222 0.190125187963161 0.181423435204257 0.184428219616413 0.181423435204257 0.185163160682337 0.189924382355231 0.187950185941625 0.183680167889096 0.187979927560051 0.194121033202427 4 4 - 5159259 5160628 5159849.636 5159031 5162771 - gene protein_coding_gene FALSE TRUE AT4G08160.1|AT4G08160.2 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein|hydrolase, hydrolyzing O-glycosyl compounds Encodes a putative glycosyl hydrolase family 10 protein (xylanase). similar to glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G10050.1); similar to RXF12, hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G58370.1); similar to putative xylanase Xyn2 [Nicotiana tabacum] (GB:AAZ79233.1); similar to putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] (GB:AAX33301.1); similar to putative xylanase Xyn1 [Nicotiana tabacum] (GB:AAZ79232.1); contains InterPro domain Carbohydrate-binding, CenC-like; (InterPro:IPR003305); contains InterPro domain Glycoside hydrolase, family 10; (InterPro:IPR001000); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.203373257919605 -2.27037263202215 0.0445247368587263 1 1.49314204924795 4.82407630006746 -0.203373257919605 0.062976481498731
AT2G44360_at 8.19394766400476 8.16117341507014 7.96319488287827 8.1864102146009 8.17180472087643 8.10597637220338 7.44109017755938 7.59909814763963 7.54135278527258 7.30792887586915 7.55157138426051 7.7088713441366 7.24600589088319 7.63229740102396 7.5910837431826 7.16026684437637 7.35739387407213 7.39183917521821 7.11412110710848 0.155707699336473 0.155285813544615 0.163535238518792 0.160427007060082 0.165683737482232 0.155225285699304 0.160653780913379 0.156675923284883 0.166670312908471 0.159080232300064 0.154615674855565 0.149224472610005 0.159009051632595 0.15282471298629 0.155352526458859 0.155930129968310 0.166300732190757 0.170364350916252 0.163842503657029 2 2 - 18327937 18328626 18328145.545 18327808 18328772 - gene protein_coding_gene FALSE TRUE AT2G44360.1 similar to Os09g0553800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063883.1); contains domain BRCT domain (SSF52113) 0.195900573816027 2.26979284669098 0.0445699201085944 1 1.49226744491029 15.3658621809679 0.195900573816027 0.0490081292890549
AT2G47960_at 7.52660992355923 7.3726349130319 7.43665642668816 7.45412873252707 7.94467283997067 7.8789474742915 7.50667227686678 7.13790565837101 7.41222553879206 7.16992963794827 7.42848952520239 7.19691106541368 7.44835479311737 7.55839161853492 7.29155745356854 7.37363925155003 7.53453452832061 7.27972084541112 7.21633628316382 0.163417648504771 0.158246748180785 0.161444827234435 0.154619163068675 0.160161043636062 0.156263776585233 0.156407099385952 0.162513192338255 0.170574118455556 0.156118332336799 0.163737871359796 0.160641131439265 0.169236814081254 0.160591680323956 0.173966369705095 0.158239367526605 0.158898799482167 0.157541798601048 0.161940178624285 2 0|2 /|+ 19634548 19635324 19634886 19632684 19636253 + gene protein_coding_gene FALSE TRUE AT2G47960.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93677.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Protein of unknown function DUF974; (InterPro:IPR010378) 0.207715870291954 2.26972727530006 0.0445750329266559 1 1.49216853476538 14.8598353832172 0.207715870291954 0.070150612178997
AT2G34310_at 9.26556156473629 9.4632143003006 9.50192423109043 9.40483395592603 9.9190593194787 9.50127280757974 10.3654602244858 10.5144677053064 9.53515290921095 10.0163350689785 9.68148899855496 9.40650925186525 9.63822725978485 9.82096208734528 9.38229811211643 9.73735244414299 9.78165593766174 9.45454455343715 9.63657785896392 0.112494697567958 0.110594580325838 0.122546839261868 0.120014759429013 0.109782546330325 0.127828665232950 0.107078287843490 0.112471237325445 0.132984135952669 0.108806556505688 0.109921188103766 0.108961116376529 0.114106404639986 0.11769368519382 0.108364692256159 0.108952421332353 0.132593417809015 0.116061616593005 0.108083654240942 2 2|0 -|/ 14485678 14486292 14486007.5 14484794 14487041 - gene protein_coding_gene FALSE TRUE AT2G34310.1|AT2G34310.2|AT2G34310.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29530.1); similar to expressed protein, putative [Medicago truncatula] (GB:ABE81136.1) -0.218439409313049 -2.26926386058135 0.0446111829830285 1 1.49146952775365 19.4130918184454 -0.218439409313049 0.085699969144063
AT3G25620_at 3.79453155131141 3.90189659571877 3.79597374250586 4.00699295169765 4.39959106117637 4.30628361779406 3.75846219221489 3.71864644071174 3.55904540353036 3.41717383013877 3.95625806993423 3.92276745899439 3.47672573458838 3.69412828138757 3.42728310115956 4.24083856932902 3.31427330083028 3.89919430691378 4.08664251726361 0.208626209379853 0.207899849443566 0.203988870456614 0.213872198252050 0.21140840178293 0.222718583443486 0.219250761977159 0.206797721458729 0.230646026684118 0.209741753993181 0.205486723568374 0.207268190748683 0.203988870456614 0.221464831685644 0.215564238116646 0.207634847115651 0.212025682925808 0.207706181991694 0.212709130061451 3 3 - 9317951 9318477 9318242.364 9317311 9320805 - gene protein_coding_gene FALSE TRUE AT3G25620.1 ABC transporter family protein Identical to White-brown complex homolog protein 21 (WBC21) [Arabidopsis Thaliana] (GB:Q7XA72;GB:Q9LI82); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G31770.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97034.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.193819583776093 2.26902636420965 0.0446297205234286 1 1.49111130830902 7.67482436240954 0.193819583776093 0.0445755802264202
AT3G13130_at 2.55965010297150 2.75693779496463 3.09551345175688 3.04930466512536 2.62175656292163 2.46412426243070 2.32692733818373 2.60992945063766 2.09539807133241 2.19249522056068 2.10635389546544 2.50904211405359 2.39138741114612 2.21705856532648 1.49872648755387 2.18452132527924 1.92027212462736 2.66749288624392 1.77489300617779 0.208629787662590 0.199274983307880 0.210599840828322 0.213626007507867 0.198042181564075 0.198197348177789 0.200162932706666 0.203363873324595 0.211142389820323 0.206809438111522 0.200347686456896 0.201173140837316 0.205386273087309 0.203224103865257 0.203931369304553 0.205560214416078 0.221407764017938 0.202332625734199 0.20320955423167 3 3 + 4223050 4223420 4223191.909 4222921 4223759 + gene protein_coding_gene FALSE TRUE AT3G13130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04515.1) 0.205120824528821 2.26886617849424 0.0446422278401718 1 1.49086970388954 4.78941076224182 0.205120824528821 0.0661231483403301
AT1G10970_at 3.80509277076373 3.57480306353749 4.15799774458306 4.10704601934786 3.72847255213558 4.50738989223109 2.97536034652407 2.93679001541262 3.59663410556843 3.37696095214097 2.84576768097704 2.93703052648818 3.40479046627041 3.44302424127497 3.13283126502447 4.36983742840838 3.46911910857421 3.53695818482858 4.00699328270155 0.233025653232311 0.228000337490625 0.228000337490625 0.233415833685700 0.231600032978363 0.239083977640918 0.228560422171441 0.231456052299720 0.228643052554723 0.231131105990999 0.228000337490625 0.233045405794247 0.229293184729032 0.231408997926299 0.228000337490625 0.228000337490625 0.234868670652553 0.235530993729674 0.239780759871822 1 1 - 3665214 3665972 3665524.182 3665089 3667139 - gene protein_coding_gene FALSE TRUE AT1G10970.1 ZIP4 (ZINC TRANSPORTER 4 PRECURSOR); cation transporter A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency. Identical to Zinc transporter 4, chloroplast precursor (ZRT/IRT-like protein 4) (ZIP4) [Arabidopsis Thaliana] (GB:O04089); similar to IRT3 (Iron regulated transporter 3), cation transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G60960.1); similar to ZIP-like zinc transporter [Thlaspi caerulescens] (GB:AAK69429.1); similar to Zn and Cd transporter ZNT1 [Thlaspi caerulescens] (GB:AAF61374.1); similar to ZIP family metal transporter [Thlaspi japonicum] (GB:BAD90843.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.267219376137693 2.26862554194705 0.0446610230997238 1 1.49050676667964 7.25042703866749 0.267219376137693 0.140997536068125
AT3G14890_at 2.61976114062168 2.73269651848332 2.95002394527823 2.26479832070847 1.95570380849741 2.19761687766967 2.5991304996641 2.91727929913752 2.06150848884620 2.83009848809728 3.35076576820929 4.47028782015942 2.73661179814905 3.47835401122953 4.70591222353534 3.44515551551472 2.5682636933236 3.07281754912714 2.82912425733762 0.262226048497485 0.249319178385072 0.254601481053869 0.256890588938149 0.24561842822439 0.256759634797779 0.251625322679631 0.253712319083116 0.244354980182697 0.238505313888655 0.245657048118472 0.245896923412676 0.255041565223511 0.245839018731487 0.244638572804941 0.252652363937738 0.240143768170965 0.243575407920493 0.238729313485827 3 3|0 +|/ 5011934 5013028 5012377.143 5008749 5013272 + gene protein_coding_gene FALSE TRUE AT3G14890.1|AT3G14890.2 phosphoesterase similar to poly (ADP-ribose) polymerase, putative / NAD(+) ADP-ribosyltransferase, putative / poly(ADP-ribose) synthetase, putative [Arabidopsis thaliana] (TAIR:AT2G31320.1); similar to putative phosphoesterase [Oryza sativa (japonica cultivar-group)] (GB:BAD87018.1); contains InterPro domain DNA 3-phosphatase; (InterPro:IPR006551); contains InterPro domain Zinc finger, PARP-type; (InterPro:IPR001510); contains InterPro domain HAD-superfamily hydrolase subfamily IIIA; (InterPro:IPR006549) 0.264881421437049 2.26848288668583 0.0446721689832609 1 1.49029161387727 5.55567536400741 0.264881421437049 0.138663028292911
AT4G09140_at 3.86932711597309 4.26972528346155 3.34681310776535 3.93766319409253 4.3893974482517 3.55160308447743 3.86557372872751 3.93185452366107 3.36497878328230 3.13744142706746 2.94351424776145 3.2255892205607 2.97750816799662 2.82614837780322 2.47747541074515 2.99648343149201 2.49709786768424 2.89020208269444 3.44948622453651 0.252426611128563 0.242513670500567 0.245191684281758 0.250125314013435 0.242449559473234 0.257374429640122 0.244924361778339 0.24500128985849 0.251211814424170 0.242002693164429 0.24844578641046 0.242600732135123 0.241585075410083 0.246051983657609 0.248047279431225 0.241585075410083 0.248966018406999 0.250576062799739 0.243075658431465 4 4 - 5817280 5817881 5817625.455 5816939 5821034 - gene protein_coding_gene FALSE TRUE AT4G09140.1 ATMLH1 (Arabidopsis thaliana MutL-homologue 1) Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization. similar to DNA mismatch repair protein, putative [Arabidopsis thaliana] (TAIR:AT4G02460.1); similar to PREDICTED: similar to DNA mismatch repair protein homolog [Gallus gallus] (GB:XP_418828.1); similar to Os01g0958900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045457.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain DNA mismatch repair protein Mlh1; (InterPro:IPR011186); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain DNA mismatch repair protein; (InterPro:IPR002099) -0.320400374214456 -2.268407126138 0.0446780893631086 1 1.49017735334997 6.98102193370344 -0.320400374214456 0.190809153897701
AT2G20870_at 2.03098767023924 2.15535545631988 2.13323578257151 2.10413615968364 1.63295722875618 1.55518619731498 1.85405181491216 2.01002401093756 2.06249884037035 2.25265396415943 2.32552764176811 1.2812822627605 1.82218273569381 1.48084103730432 2.36221096857871 1.57018429313873 2.45684771740057 2.14004280518720 2.15095842026764 0.212862488673547 0.214912569001782 0.219242245496084 0.220049510408029 0.217623982934949 0.223666965221624 0.216351555868204 0.219512485449125 0.218912554375743 0.217676013870381 0.216282275555414 0.216946207683101 0.212586566853097 0.212586566853097 0.212586566853097 0.220685632841996 0.223181397798583 0.232512123342568 0.221960455090774 2 2 - 8989347 8989694 8989527 8989071 8989793 - gene protein_coding_gene FALSE TRUE AT2G20870.1 cell wall protein precursor, putative Identical to Putative cell wall protein precursor [Arabidopsis Thaliana] (GB:P47925;GB:Q9SKT2); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G28160.1); similar to putative cell-wall P4 protein [Brassica napus] (GB:AAF29528.1) -0.190853185778725 -2.26819009887201 0.0446950533403475 1 1.48985004337381 3.97712196058929 -0.190853185778725 0.0373933422664664
AT2G22180_at 0.418323243963467 0.64483782102033 0.658496518602579 0.73967754538952 0.493420460653641 0.701999415101664 0.628145990435083 0.699178302271159 0.257920146244311 0.340693976094750 0.276827263125511 0.348235462173544 1.03462299750923 0.722874255306733 0.552163765478965 0.592899165818129 0.645698952348704 0.90243250682064 0.260038139270674 0.238361332879680 0.234549525307510 0.232471723711218 0.24025209490556 0.234790347699755 0.237709688847802 0.235119724026027 0.232401674359532 0.240503242032918 0.236559783002732 0.235889866466969 0.235644375481873 0.242579393887820 0.236296990543584 0.238344760913094 0.232880979071327 0.232421153881535 0.236348998670034 0.241762008319874 2 2 + 9436399 9436795 9436581.273 9435823 9436924 + gene protein_coding_gene FALSE TRUE AT2G22180.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G39745.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE82616.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.199514510525222 2.26808682402785 0.0447031280122949 1 1.48969429248043 1.08335327048431 0.199514510525222 0.056461980118254
AT2G25220_at 2.51229724774734 2.65600218031494 2.51019900228483 1.89099113961103 2.16716725367620 1.90086181836117 2.61981858644036 2.32298192532105 3.29884006849083 3.28441604916577 3.10000874649913 2.8946075884049 3.25706746653850 3.09206229338959 3.53958094608834 3.06828598651023 2.29735941524897 3.77538826684354 3.10683795044194 0.235524752375409 0.230366620467356 0.231105919161962 0.232991951472989 0.229208405086421 0.234475081340532 0.236621733085265 0.229208405086421 0.240342156043415 0.232593161325187 0.235729560019191 0.233493826972076 0.229208405086421 0.230883081159616 0.235493832099481 0.229208405086421 0.236572280952933 0.229208405086421 0.239139862124345 2 2 - 10750024 10751064 10750463.75 10749793 10752202 - gene protein_coding_gene FALSE TRUE AT2G25220.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G32000.1); similar to putative protein kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD25150.1); similar to Os05g0319700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055185.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.256228224407531 -2.26783207237025 0.0447230520837386 1 1.48931010517146 5.50157811658124 -0.256228224407531 0.129860209703801
AT3G23605_at 6.2757676444879 7.11025476418077 6.58584667178488 7.39561862339634 7.70128263257173 6.88514507447055 6.30102466462103 6.90027803900264 5.8302045981181 5.72102388343533 6.30208008802481 5.65171058618734 6.21522069102627 6.21305657771573 5.24579194222153 6.08759016254078 5.98644487415351 5.74621780601647 5.26529460162524 0.241935797677019 0.246689139346346 0.247388855725407 0.250458632735508 0.267786437829877 0.25742550772355 0.237924295882231 0.250464721289418 0.253534026199967 0.243218241719219 0.241356595376779 0.244715004026085 0.249818249012905 0.260474872952141 0.241970865504148 0.240753231628449 0.251271109330922 0.240225667992400 0.246469500526115 3 3 + 8476710 8477115 8476889.909 8476578 8477399 + gene protein_coding_gene FALSE TRUE AT3G23605.1 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14250.1); similar to Os04g0670800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054216.1); similar to OSJNBa0043A12.36 [Oryza sativa (japonica cultivar-group)] (GB:CAE02831.2); contains InterPro domain UBX; (InterPro:IPR001012) 0.410324184537854 2.26778367462573 0.0447268382255906 1 1.48923711865309 12.6626631570038 0.410324184537854 0.266823382988948
AT4G21320_at 3.51164494033194 3.5753825760724 3.04441147003135 3.3628143171219 3.06334659658092 3.47164356890541 2.80652153778470 3.4074344685774 4.15583490544337 3.79989208880711 3.72206078981695 3.70954272709987 4.13506124757798 3.22564766624003 3.65635610931551 3.33061917564907 3.36731838501381 3.78361625452194 4.20679342798372 0.292116319782392 0.285460496668140 0.27812608545183 0.290804281664872 0.284717436705007 0.275459322039696 0.288030148795205 0.275980873268619 0.275459322039696 0.275459322039696 0.287238518193478 0.275459322039696 0.279734765693088 0.283254390514783 0.28310750806953 0.275459322039696 0.275473019042575 0.275459322039696 0.291632267730262 4 4|0 +|/ 11341108 11341657 11341342.4 11340372 11341887 + gene protein_coding_gene FALSE TRUE AT4G21320.1 HSA32 (HEAT-STRESS-ASSOCIATED 32) Encodes heat-stress-associated 32-kD protein. Up-regulated by heat shock. Thermotolerance in a knockout mutant was compromised following a long recovery period (> 24 h) after acclimation heat shock treatment. similar to phosphosulfolactate synthase-related protein [Lycopersicon esculentum] (GB:AAV36519.1); contains InterPro domain (2R)-phospho-3-sulfolactate synthase, ComA; (InterPro:IPR003830) -0.263793786102692 -2.26722247923512 0.0447707628890288 1 1.48839083768195 7.11562556866698 -0.263793786102692 0.137711245998157
AT4G00760_at 6.15808251769002 5.23134585431281 6.39253826923643 5.81405536109881 7.26601953111069 6.515677368856 6.1228815229175 5.23249242942793 5.282366167954 6.47102149406616 6.22831776120543 5.60166854803524 5.79816099587964 6.25707608689885 5.93548297774246 5.86055375107505 5.80425083583007 6.08949453783044 5.98870055996132 0.162929202521725 0.171274244515308 0.169030916097155 0.168400343728855 0.177030310173248 0.168999396504781 0.166937823029981 0.168701248981573 0.173254829062083 0.162929202521725 0.174447906028508 0.168274927449909 0.164954252535583 0.169885279240357 0.170729134867447 0.168551008593791 0.170249929777502 0.174031433669730 0.16491432661094 4 4 - 327246 327948 327425 327025 329048 - gene protein_coding_gene FALSE TRUE AT4G00760.1 APRR8 (PSEUDO-RESPONSE REGULATOR 8); transcription regulator Encodes a response-regulator like protein. Identical to Putative two-component response regulator-like APRR8 (Pseudo-response regulator 8) (APRR8) [Arabidopsis Thaliana] (GB:O23100); similar to ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT4G31920.1); similar to SRR391 [Striga asiatica] (GB:ABG35773.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.421859165486701 2.26689609258634 0.0447963281821638 1 1.48789867573302 12.0220891539009 0.421859165486701 0.276307631101767
AT1G53920_at 2.87028796171351 3.39310845122053 2.09037543144424 2.62409235985536 2.30384309776601 2.34221979984026 2.29922700294680 2.16574626798230 3.01052676119889 2.60532915602546 2.54472789759303 3.19736388293465 2.1988877507722 2.69948322651227 2.69118041411394 2.62161348991193 2.25141378230642 3.53639814344948 3.05717964062154 0.228570786401267 0.244329210372248 0.218756634559910 0.223837113469543 0.218756634559910 0.22362061095881 0.233078993811510 0.227046968229439 0.231658119415971 0.225416428510039 0.223491405161324 0.228111056260384 0.227888445275910 0.226338758113711 0.227641847380665 0.225686484044852 0.230461681175955 0.220487293704854 0.221639146041978 1 1|0 +|/ 20142533 20143248 20142817.7 20141380 20143305 + gene protein_coding_gene FALSE TRUE AT1G53920.1 GLIP5 (GDSL-motif lipase 5); carboxylic ester hydrolase Contains lipase signature motif and GDSL domain. similar to GLIP1 (GDSL LIPASE1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT5G40990.1); similar to lipase SIL1 [Brassica rapa subsp. pekinensis] (GB:AAM47031.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.25766901395269 -2.26656827711985 0.044822019516725 1 1.48740438010267 5.31543525962839 -0.25766901395269 0.131508439710374
AT3G13410_at 11.0166944673393 11.1496729274715 11.1621242227281 11.2319984548028 11.3698047922828 11.1700951777284 11.3555264325599 11.3312155409755 11.0270374632373 11.0040157102427 11.3526457629486 11.3323688929988 11.0577709863342 11.2977737818773 11.1119255565613 11.1332204075646 11.2765092271974 11.2753493404586 10.5600413647407 0.0990791899412722 0.0919790157908714 0.0972852835696031 0.094897518394986 0.0929927297189162 0.0968362232182125 0.09833201090765 0.0919790157908714 0.0985960139136114 0.0939658724907095 0.0919790157908714 0.0928741016401144 0.0974150017205 0.0919790157908714 0.0964121094786987 0.0919790157908714 0.0970721326753106 0.0942620586864853 0.0986323605596003 3 3|0 -|/ 4362157 4363112 4362633 4361864 4364269 - gene protein_coding_gene FALSE TRUE AT3G13410.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG21861.1); similar to Os12g0123900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066036.1); similar to Os11g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065630.1) 0.193112817442331 2.26641422812074 0.0448340974328899 1 1.48717210497188 22.2700883389358 0.193112817442331 0.0434503797082044
AT3G45740_at 4.58606142468457 5.07134013727583 4.98900869420342 5.09081732573861 5.27767152940696 5.06325879535575 4.88729369108453 4.85840808343121 4.49135641217268 4.51634343579748 4.98706760239417 4.9440377419603 4.66433024092878 4.81754729953028 5.19302732452527 4.57219197728206 4.63945916455276 4.88218249378492 4.92272177604163 0.211613273101416 0.204628213112066 0.203746779084217 0.213836018413334 0.206090461278451 0.219634043674724 0.207091273770045 0.209192660182658 0.213738831670684 0.212124527257775 0.204819112866247 0.205799267642464 0.208573606272705 0.205911548078547 0.211692547533863 0.205249378742947 0.202356419971959 0.211819055990076 0.202356419971959 3 0|3 /|+ 16803424 16804233 16803895.75 16801746 16804519 + gene protein_coding_gene FALSE TRUE AT3G45740.1 hydrolase family protein / HAD-superfamily protein similar to Peptidase S26A, signal peptidase I; HAD-superfamily hydrolase, subfamily IIA [Medicago truncatula] (GB:ABE81736.1); contains InterPro domain HAD-superfamily subfamily IIA hydrolase, CECR5; (InterPro:IPR006353); contains InterPro domain HAD-superfamily hydrolase, subfamily IIA; (InterPro:IPR006357) 0.224209929003186 2.26623761887017 0.0448479479913183 1 1.48690581916868 9.71845963779282 0.224209929003186 0.0936204339371725
AT1G30210_at 6.71416825944522 6.83868202189803 5.99284796705905 6.45045142031021 6.8805724874813 6.63817902337543 6.50613251180529 6.29355909814571 5.75646161212335 6.44084328167963 7.09664374594111 7.20299013343383 6.69127227727846 6.80395855379256 7.1875713278661 6.36602844272961 5.86126713745158 6.74870997458685 6.37190317305412 0.188394179761478 0.186951147801754 0.202738416845035 0.200619983470464 0.187362613535077 0.192739668416947 0.186951147801754 0.204448037392186 0.212141756504995 0.194915505319412 0.190527683160338 0.191399885009337 0.189974921005037 0.198303742036006 0.195999569062484 0.187412178331566 0.195289999612894 0.197135792911465 0.193386199512226 1 1 - 10628754 10629286 10629005 10627169 10630594 - gene protein_coding_gene FALSE TRUE AT1G30210.1|AT1G30210.2 TCP24; transcription factor similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G18390.2); similar to putative transcription factor [Solanum tuberosum] (GB:CAD91129.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.228723214291123 2.26620768411307 0.0448502960285005 1 1.48686068509704 13.0065947094004 0.228723214291123 0.0992384599017823
AT2G28790_at 2.40339925242730 3.01546752401273 1.78728395683985 2.45825803330543 1.95402891592204 1.98774192579376 3.58918787573929 3.88934195924754 3.31007893505451 4.15536517553795 4.35967683766011 4.88232006935899 4.02969963369221 4.81621591121249 4.34030055779292 3.32324678618573 3.12823347547198 4.78864761179206 3.38181238513548 0.251033795184355 0.246720642228018 0.255456558888202 0.255282828716321 0.254352086459290 0.256514081714974 0.246462650577514 0.251855673190869 0.254205978969266 0.251047085074971 0.258119878909271 0.257669361164198 0.246462650577514 0.260126184569496 0.253941825323052 0.247880522049960 0.252974826577976 0.250268358641573 0.249974689735182 2 2 - 12361768 12362232 12361980.182 12361507 12362508 - gene protein_coding_gene FALSE TRUE AT2G28790.1 osmotin-like protein, putative similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to thaumatin-like cytokinin-binding protein [Brassica oleracea] (GB:AAO12209.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) -0.292365249869144 -2.26570687562556 0.0448895962194077 1 1.48610561795588 6.54773606823022 -0.292365249869144 0.165632644826669
AT4G31260_at 0.892566750955869 0.964466236938142 1.09739533683129 1.28821318021982 1.35726639011605 1.44180076965656 0.667746006841952 0.669602390291419 1.18787916687495 1.22210169449568 1.27908747497449 1.0762758272378 1.5362528770599 1.46478004486159 1.08977534803099 0.846035512716142 1.63333256107106 1.11939104646151 1.70403130519654 0.187494953315513 0.181018970019204 0.184672256449117 0.184710627433968 0.184228379094537 0.187551437685910 0.185232896275219 0.185447986361282 0.193453486393015 0.186720695219092 0.186111724309061 0.183620879773952 0.185211388226652 0.184968544192806 0.194609228191849 0.183332211417194 0.180140657099887 0.198698084338367 0.189337117359836 4 4 - 15182599 15182763 15182675.455 15182599 15182790 - gene protein_coding_gene FALSE TRUE AT4G31260.1 unknown protein 0.190926260322522 2.26546705480901 0.0449084275143434 1 1.48574405828174 2.36085899543509 0.190926260322522 0.0382017897644439
AT2G02230_at 5.72248987024452 6.26733574982338 6.47595028244785 6.38697753773763 6.02546746427912 6.0563593751501 6.48345605240547 6.34877955644247 5.36997409555192 5.07847690943927 5.14872186245822 5.88423898855762 5.22897459685668 5.43624632152952 5.77604171319927 5.56724144310782 5.6842988783557 5.52252405880851 4.86913272908869 0.202055071299157 0.203837928134548 0.204450973645042 0.202787181547608 0.204844007196459 0.206028182064801 0.223899214962802 0.201893577625898 0.212991944670128 0.212445402227505 0.198629418189401 0.198629418189401 0.215634440283692 0.205431277482218 0.213750343088434 0.203532535607124 0.210587103026309 0.219668861968361 0.220744568520463 2 2 - 590576 591076 590823.727 590220 591649 - gene protein_coding_gene FALSE TRUE AT2G02230.1 ATPP2-B1 (Phloem protein 2-B1) similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.227924047920298 2.26439313782779 0.0449928471663159 1 1.48412513259865 11.5393005998425 0.227924047920298 0.0984839557172954
AT4G17830_at 9.53050483693592 9.71127335041307 9.7507363037029 9.70069807667054 9.57626647396447 9.28068045097094 9.74476345846362 9.42264008349665 9.04061595590775 9.30601828757721 8.69434931901494 8.51149820502765 8.82198370042339 8.64933462578062 8.61986840834969 8.88806409633508 8.88627242927533 8.88705908962442 9.10507337402668 0.123114235287831 0.118739446724478 0.126437681053145 0.120510043502118 0.123356991645382 0.132379588048832 0.124493716814024 0.12489141134903 0.143028034652175 0.126027004478077 0.123047944388636 0.121921789762778 0.120546192560352 0.123621920415173 0.127097959915330 0.121340901617843 0.120994119517764 0.127542102128158 0.119482019288807 4 4|0 +|/ 9917041 9917990 9917496.125 9915844 9918256 + gene protein_coding_gene FALSE TRUE AT4G17830.1 peptidase M20/M25/M40 family protein similar to DIP-1 [Citrullus lanatus] (GB:BAA95409.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65618.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65173.1); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain Peptidase dimerisation; (InterPro:IPR011650) -0.215482788804213 -2.26415031607959 0.045011956296218 1 1.48375911096369 18.5373818493603 -0.215482788804213 0.0823266790679783
AT3G57080_at 6.97999532087209 6.99785305672774 6.22074404635198 6.13826975211677 6.88900538772639 6.84139472722142 5.77687648341271 5.52357162539098 5.02261441369227 5.7592521556367 5.61237473592645 5.76940182212521 5.83519685091854 5.7291258603208 5.68426391608418 5.291999863289 6.02954109778982 5.78175307454219 5.80989938808622 0.207310569576267 0.204656281573821 0.214775394392236 0.20544779317219 0.209264474596956 0.220903498739226 0.202713407290328 0.208251200157811 0.225855660491669 0.212690621140443 0.213013254432836 0.202720492335347 0.211909764731995 0.210957801316148 0.218082724876892 0.207070017263036 0.212323575467243 0.212660237126940 0.212478359020252 3 3 + 21136935 21138425 21137561.091 21136836 21138615 + gene protein_coding_gene FALSE TRUE AT3G57080.1 eukaryotic rpb5 RNA polymerase subunit family protein similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT2G41340.1); similar to RPB5d [Brassica napus] (GB:AAF81222.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain RNA polymerase Rpb5, N-terminal; (InterPro:IPR005571) 0.194448928453026 2.26412385708004 0.0450140389880474 1 1.48371922822114 12.0446117025256 0.194448928453026 0.0469329334039118
AT2G27090_at 6.74740898364216 6.61753168866072 6.88108716481936 6.93992595020656 6.95627739532199 7.15585792084639 6.4603427563082 6.16219378491484 5.9487075004901 5.94744344377897 5.64920851645458 5.87129795308951 5.99078909776038 6.03180027600821 6.00435280680274 6.11560696900507 6.48197608324194 5.70787549174307 6.2776189512993 0.184666738932352 0.185960162973194 0.190074193655825 0.195103781776577 0.184666738932352 0.193280281515273 0.189597729461804 0.204675321594640 0.200985278565658 0.196145049542074 0.185278683030265 0.189828685716489 0.188950798188416 0.192777900453744 0.19426401742937 0.187971277813019 0.190697599323113 0.184871164709919 0.190670351209724 2 2 - 11574960 11575285 11575120.091 11574514 11578934 - gene protein_coding_gene FALSE TRUE AT2G27090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39790.1); similar to Protein of unknown function DUF630 [Medicago truncatula] (GB:ABE82615.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.205053952578744 2.26346745328739 0.045065736765977 1 1.48272984749202 12.7598465544830 0.205053952578744 0.0668123940185493
AT4G36870_at 5.67752169727902 5.82080327902715 5.96609256220022 6.32375694003237 6.74517591686049 6.58379621768478 6.089056077926 6.18219620471436 6.12381570315648 6.02823183801868 6.34665732406028 5.83206587405949 6.0149846370506 6.39476883962698 5.30338300037271 6.16417368320622 6.3568827925115 5.87874335546919 6.08636290178956 0.190090731097291 0.193531625044094 0.187617280296615 0.186873187873099 0.188569299192405 0.199507595516827 0.183745429520983 0.194208390111198 0.191797281193564 0.185141017896096 0.183796034262567 0.182684772327801 0.190122963613040 0.181617873508078 0.196374977041272 0.179699404069425 0.194031255622629 0.187502530364057 0.182253832993407 4 4|0 +|/ 17371590 17373375 17372088.5 17368964 17373927 + gene protein_coding_gene FALSE TRUE AT4G36870.1|AT4G36870.2 BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor|BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding Encodes bel1-like homeodomain 2 (BLH2). similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to homeodomain protein [Malus x domestica] (GB:AAF43095.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.209649192548776 2.26298832175428 0.0451035087566125 1 1.48200771794348 12.2315136549403 0.209649192548776 0.074064951746844
AT3G02560_at 10.1387975908458 10.3169500496026 9.61499149086002 9.74007410395617 9.94383432037128 9.97655255341253 9.8786052788541 9.99086708562307 9.67546162874708 9.77821899497755 9.84213111473317 10.0774305052024 9.7162321430065 9.60719317682973 9.98784563694121 9.44218109137006 9.35362922350998 9.40372150820213 9.94999234451155 0.113912077444633 0.111593146857241 0.129912947500519 0.117551457460400 0.112418913755719 0.120953209852285 0.111887580418511 0.113808295277069 0.125308098726380 0.117677855522106 0.117206582071387 0.111593146857241 0.115908503017939 0.114159175448527 0.123516687481957 0.111593146857241 0.122755070450078 0.123795440538092 0.117703411240341 3 3 + 542671 543144 542834.818 541722 543392 + gene protein_coding_gene FALSE TRUE AT3G02560.1|AT3G02560.2 40S ribosomal protein S7 (RPS7B) Identical to 40S ribosomal protein S7-2 (RPS7B) [Arabidopsis Thaliana] (GB:Q9M885); similar to 40S ribosomal protein S7 (RPS7C) [Arabidopsis thaliana] (TAIR:AT5G16130.1); similar to 40S ribosomal protein S7 (GB:Q9XH45); contains InterPro domain Ribosomal protein S7E; (InterPro:IPR000554) -0.192435328426194 -2.26186714812113 0.0451920145903962 1 1.48031810172274 19.6900939955506 -0.192435328426194 0.0427613678526768
AT3G06760_at 7.2316407478624 7.53923735209608 7.62816632133589 7.34874060369843 8.1480126214751 7.92549758961722 7.2141657116656 7.64089462057244 7.74349979056744 7.48940275966414 8.22026021518682 7.75617563402161 7.82540322407563 7.94883397052255 7.39566491510578 7.92509200658297 7.30361710262262 7.83258985436692 7.73886028780553 0.159540820324667 0.154619737017083 0.168901311368716 0.152717114469185 0.150765767352776 0.157117280375088 0.153845744586549 0.158404050672499 0.166467214208973 0.163331005522909 0.152418809939331 0.155824657961451 0.164887290546214 0.152391682314541 0.154009344594638 0.153900644187179 0.172455849220813 0.154575872688296 0.153587964589239 3 0|3 /|+ 2133207 2134316 2133991 2132843 2134562 + gene protein_coding_gene FALSE TRUE AT3G06760.1 similar to HRB1 (HYPERSENSITIVE TO RED AND BLUE) [Arabidopsis thaliana] (TAIR:AT5G49230.1); similar to fiber protein Fb2 [Gossypium barbadense] (GB:AAN77145.1); contains InterPro domain Drought induced 19; (InterPro:IPR008598) 0.237410005973722 2.26185434803398 0.0451930259964855 1 1.48029881332820 15.3011488933685 0.237410005973722 0.110036764603094
AT2G23250_at 1.26422831140146 1.52615573626448 1.20685877457196 1.40794740849177 0.859436905557517 0.910293992764316 1.15345876316040 1.05394506693759 1.62119226407373 1.72355937981720 1.46304435895515 1.04009281512145 1.27493313080116 1.25929295330140 1.06884433375319 1.06279626194275 1.61813167419643 1.41497526993090 1.22728674080774 0.208635221135614 0.203468646343913 0.199542294082925 0.205179702307928 0.199668082809669 0.205566432324184 0.204570947198776 0.208940918441672 0.207748240417681 0.206967001281235 0.199542294082925 0.205738183752784 0.209256588461144 0.205932210859428 0.201834319233614 0.200811258538934 0.206792637528412 0.208324621552924 0.207340997650519 2 2 - 9904920 9905335 9905090.727 9904889 9906205 - gene protein_coding_gene FALSE TRUE AT2G23250.1 UGT84B2 (UDP-glucosyl transferase 84B2); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G23210.1); similar to UGT84B1 (UDP-glucosyl transferase 84B1), UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ indole-3-acetate beta-glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G23260.1); similar to resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca] (GB:ABH03018.1); similar to Limonoid UDP-glucosyltransferase (Limonoid glucosyltransferase) (Limonoid GTase) (LGTase) (GB:Q9MB73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.201030822121923 -2.26119304190643 0.0452453090689112 1 1.47930233781004 2.57242894221862 -0.201030822121923 0.0603293561696703
AT1G69320_at 2.29244565901475 2.35897813570018 1.74627468890555 2.29199394337252 2.16323143834118 2.34048007755526 2.38925553549563 2.92518916188128 2.57636037456468 2.15771129974500 2.46093540289946 2.28859943574015 2.50908745372658 2.61597309461932 2.20043014456264 2.13100310392397 1.78524235231863 2.43431570800654 2.67817733950632 0.233794427645331 0.231917725288561 0.232557754277012 0.241366852686848 0.249211615900306 0.231773125591503 0.241631279380093 0.231248871779524 0.237450954828846 0.253319752530716 0.238611134422469 0.228957710725013 0.228957710725013 0.235503785407212 0.235127095531124 0.228957710725013 0.234699928128194 0.249186224528089 0.228957710725013 1 1 + 26065633 26065827 26065736.143 26065525 26066177 + gene protein_coding_gene FALSE TRUE AT1G69320.1 CLE10 (CLAVATA3/ESR-RELATED 10); receptor binding Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. similar to CLE9 (CLAVATA3/ESR-RELATED 9), receptor binding [Arabidopsis thaliana] (TAIR:AT1G26600.1) -0.261761710138336 -2.26115718109463 0.0452481458965212 1 1.47924830413916 4.70045508415662 -0.261761710138336 0.136359828461738
AT4G34310_at 5.13358676935501 4.30309381635954 5.46800995358246 4.5990056681221 5.03728764794549 4.80834995499641 4.63256668868334 3.7696541246884 4.15790728505274 3.96042355346924 3.87960379557685 4.38674332637202 4.86682477603836 4.10490048451977 3.72899710239131 4.22617073277493 5.07812538109917 3.90241625406137 3.85406256496259 0.217134647968951 0.224471869378309 0.218656451880763 0.221143220025705 0.218170619484013 0.235592218935429 0.216128969916505 0.216128969916505 0.224799492374482 0.221751119692563 0.216128969916505 0.220157058050282 0.216128969916505 0.220630474804367 0.219167593610747 0.216594100289911 0.220534879585160 0.229569115813275 0.221138297739508 4 4 + 16417219 16418373 16417613.1 16414117 16419732 + gene protein_coding_gene FALSE TRUE AT4G34310.1|AT4G34310.2 binding similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94355.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.399681443416371 2.26102501022287 0.0452586029630698 1 1.47904915641247 8.85020459434947 0.399681443416371 0.259115341238336
AT3G10650_at 6.23268805754975 6.4677021333121 6.19438503658325 6.58826620826849 6.59908228759848 6.33791351999737 6.38404033097003 6.4153238183778 5.65139901055969 5.49825499579089 6.09612161050043 6.37301806229385 5.95076233158814 6.35436799650959 6.24771744497503 6.27842889715718 5.5470055383021 5.45616122262058 5.79709367499385 0.22262640194168 0.225402569166769 0.223630610401498 0.222931851515046 0.223967990667958 0.231542645358644 0.228853304684119 0.223101755398822 0.245726712273951 0.23805912270412 0.224603899746920 0.221592440089261 0.226498320756516 0.233933796893617 0.236430850137629 0.226128097399004 0.245659643292097 0.235343009155274 0.230273829024378 3 3 - 3325631 3326094 3325893 3325175 3330897 - gene protein_coding_gene FALSE TRUE AT3G10650.1 similar to structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to Os03g0788300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051501.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99255.1) 0.222002586135683 2.26065023006468 0.0452882673661889 1 1.47848447716203 12.2458570649696 0.222002586135683 0.0915002335514195
AT2G28710_at 4.3120050169083 4.55343648880169 3.75931043130605 4.31728047793031 3.7084964532535 4.40013186984794 2.9005800057577 2.50115654637821 3.29809927400928 2.75007219264572 2.98159737140273 3.1331081349013 3.12642734628770 3.19089202908248 3.03945132594826 2.90086142964947 3.60647983412 3.26290222403157 3.05380122231809 0.237822586267084 0.239229559811223 0.245571502756326 0.241088274668679 0.237221256485091 0.250240258891373 0.231152689653297 0.243881965396693 0.238497717985754 0.231004047595327 0.231032967508698 0.231004047595327 0.23450571018343 0.232788232185622 0.236448825318177 0.236943620000595 0.234980813941024 0.239065728079219 0.232236847934391 2 2 + 12330090 12330455 12330242 12330051 12330521 + gene protein_coding_gene FALSE TRUE AT2G28710.1 zinc finger (C2H2 type) family protein similar to RHL41 (RESPONSIVE TO HIGH LIGHT 41), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G59820.1); similar to C2H2-type zinc finger protein [Brassica napus] (GB:ABB52061.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.300367179613273 2.26038209528594 0.0453095020916218 1 1.47808049688000 6.90115259039911 0.300367179613273 0.173703990808243
AT3G42690_at 1.48270201456973 1.17794062796889 1.69089192635206 1.54681778393983 1.32237966999872 1.56727801238010 1.12304577199285 1.57298954454631 1.41710902707136 1.58682246449204 1.57812450183814 1.45614308800855 1.70025608030932 1.94477711771168 1.76187256769536 1.67810030741257 1.68731557482725 1.69776787819403 1.23497333435890 0.207573949217712 0.205955693209652 0.209990423200717 0.213105906880733 0.207557315077674 0.208783300370178 0.211311022359507 0.218440011221729 0.208569079724909 0.209639033641204 0.205955693209652 0.215056952957109 0.210441490764915 0.207436562338552 0.218549396011097 0.215102710042211 0.205955693209652 0.207032051289126 0.22112760870624 3 3 + 14781155 14781641 14781388.455 14777975 14781749 + gene protein_coding_gene FALSE TRUE AT3G42690.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04130.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G20750.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) 0.233874361295205 2.26029383411345 0.0453164939587871 1 1.47794752291844 2.98601212637208 0.233874361295205 0.106123782446733
AT1G79770_at 6.13069804450936 6.3991885767136 5.0686979724168 5.03677137690529 5.62234786583535 6.18852911606202 5.13914459425395 5.94019442675587 6.13238321252209 5.80393322813835 5.61822237992685 5.21754716573186 5.43886895002004 5.73761092291244 5.27272413981062 6.04382906781927 5.64987141019233 5.82793105333047 5.41368435687934 0.226848262580838 0.228828031134031 0.233621416357543 0.226873469132548 0.226065813939798 0.231920658495553 0.224889406770287 0.224929719577991 0.223377781377661 0.235655890278562 0.229891177142305 0.224929416676446 0.228487143455403 0.235079090132224 0.228713305674703 0.223356984615077 0.224719244156145 0.225539662041852 0.237246285760472 1 1 + 30019294 30019740 30019537.273 30019254 30019971 + gene protein_coding_gene FALSE TRUE AT1G79770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25840.1); similar to Os06g0554200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057846.1); similar to Os01g0199700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042311.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26169.1); contains InterPro domain Protein of unknown function DUF1677, plant; (InterPro:IPR012876) -0.302863895357638 -2.25965146604443 0.0453674122580181 1 1.4769797797118 11.3827761143805 -0.302863895357638 0.176086714625096
AT2G26690_at 9.2313053412109 9.731384854714 10.1691424769236 10.1481386328345 10.2098916310779 9.90185911652916 11.4829312206673 11.3219800468788 9.89551337051144 10.3660926916872 11.2545833124392 10.8500763768861 10.9207940936252 10.9010510605089 10.6547046817656 11.0086876363048 11.0494476064128 11.2407392175524 10.2902664609801 0.108348003368080 0.103327536402745 0.104505601425730 0.107399465043334 0.103409028703461 0.108696859012585 0.102520734978885 0.104274961888356 0.117809479456365 0.105837594516181 0.109680789893966 0.104803000240147 0.105279755983397 0.103873397635723 0.103494899481459 0.104568229089003 0.107556406086112 0.109148608532055 0.105590429439512 2 2|0 -|/ 11354555 11355069 11354755 11354225 11358071 - gene protein_coding_gene FALSE TRUE AT2G26690.1 nitrate transporter (NTP2) similar to NRT1.1 (nitrate transporter 1.1), transporter [Arabidopsis thaliana] (TAIR:AT1G12110.1); similar to putative dicarboxylate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD87491.1); similar to dicarboxylate transporter [Alnus glutinosa] (GB:CAD32549.1); similar to Os01g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043326.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.233205294467088 2.259353846184 0.0453910221833725 1 1.47653143566322 20.8590631680611 0.233205294467088 0.105451224210950
AT1G55255_at 6.79467652403602 6.98840244804835 7.25871912413379 7.2634655297229 7.36148857818722 6.58456677390718 7.08908190070271 6.80766763945067 6.73346261528767 6.90710640857517 5.98977093207624 6.05866258476629 6.10572995236607 6.38926370830322 5.71579782745869 6.66923427996127 6.33454687148416 5.99353008697219 7.05409239663044 0.227470054373687 0.226483502493641 0.227268730780622 0.226483502493641 0.23986475541312 0.245415507932491 0.241807311912038 0.239380236218181 0.234134037151850 0.235206248164116 0.226790611370786 0.226483502493641 0.226483502493641 0.228911959046879 0.232003615507907 0.226483502493641 0.244048827312471 0.230997593360802 0.232859093436463 1 1 + 20615260 20615926 20615623.545 20613786 20616314 + gene protein_coding_gene FALSE TRUE AT1G55255.1 HUB2 (HISTONE MONO-UBIQUITINATION 2); protein binding / zinc ion binding AT1G55250 and AT1G55255 will likely be merged in the TAIR8 genome release. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. similar to HUB1 (HISTONE MONO-UBIQUITINATION 1), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G44950.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47998.1); similar to Os10g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065421.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.272025284822953 -2.25931520940223 0.0453940880711874 1 1.47647323326324 13.5461523167342 -0.272025284822953 0.146877819047641
AT1G31530_at 0.301204758947250 0.23346235706376 0.509261978795032 0.982128122477402 0.746136399172807 0.916228684853692 0.90115587811941 0.648272944130355 0.785137961862203 0.612660057643349 1.23327331386206 0.77148599298603 0.579490853881201 0.675900587311057 0.87860011529964 0.728117122276166 1.60477557482535 0.490688636927715 0.652961243706349 0.206009427003216 0.212717787282240 0.20672435607758 0.203895877447488 0.20448044774315 0.204230495370327 0.203222138684862 0.211028319678233 0.205956053144026 0.207846120755500 0.207978699190746 0.203222138684862 0.204802373282675 0.218899367503277 0.207834507580126 0.203222138684862 0.203222138684862 0.209011833994351 0.210644411757581 1 1|0 -|/ 11281245 11281897 11281534.25 11281169 11282449 - gene protein_coding_gene FALSE TRUE AT1G31530.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G31500.4); similar to Os05g0389500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055434.1); similar to PREDICTED: similar to CCR4 carbon catabolite repression 4-like [Danio rerio] (GB:XP_697426.1); similar to hypothetical protein UM03130.1 [Ustilago maydis 521] (GB:XP_759277.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.227059957680029 2.25923901840802 0.0454001345261942 1 1.47635846010666 1.43167036331586 0.227059957680029 0.09805842683619
AT2G25450_at 12.2473912513637 12.4051884268055 12.4489714741521 12.3359875801369 12.6242912911669 12.2368892412443 12.6282656926542 12.5778917750473 11.1573265138411 12.2689903253909 12.0923376672328 11.7047898659125 12.2720635444378 12.3308723857469 11.4168197907784 11.8286345091161 12.4137609868313 12.3196938193444 11.2949334569341 0.102309999732337 0.0955195295553262 0.100163583207659 0.104492055642391 0.100109507360150 0.0990791803891424 0.10042182055054 0.0971635499685327 0.102522807166539 0.0962471319672808 0.0974964200532419 0.0987029549428268 0.0967507061098697 0.098377704282416 0.0999944644015928 0.0955195295553262 0.104750883952526 0.096200152112211 0.100497909828169 2 2 - 10837373 10837876 10837616.818 10836995 10838733 - gene protein_coding_gene FALSE TRUE AT2G25450.1 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT2G30830.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.210236041330178 2.25904302904179 0.0454156916368163 1 1.47606322944599 24.2486704265199 0.210236041330178 0.0754889732315825
AT3G23580_at 7.96142555102649 8.59417863440154 9.06685147869523 8.81008157112663 8.85248382146125 8.63806116403287 9.47826291041344 9.4304660997154 7.74678441054436 8.28763594400223 7.01760264550655 7.06725370182057 8.00520066887221 7.39551042230886 7.03521597533147 8.02071972795012 8.39130039626276 7.56331794229984 8.0778681186982 0.202323374330059 0.193544163041361 0.193544163041361 0.200357428175281 0.19743742980779 0.193544163041361 0.193544163041361 0.20113730353072 0.208328252800111 0.208078811918111 0.202927921080381 0.203186792888413 0.199596922698631 0.207908857829187 0.210719860012476 0.194356899383701 0.205674842149550 0.193544163041361 0.201527506692278 3 3|0 +|/ 8461486 8462512 8461900.667 8460052 8462822 + gene protein_coding_gene FALSE TRUE AT3G23580.1 RNR2/RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development. Identical to Ribonucleoside-diphosphate reductase small chain A (EC 1.17.4.1) (Ribonucleotide reductase small subunit A) (Ribonucleoside-diphosphate reductase R2A subunit) (Protein R2at) (AtRNR2) (RNR2A) [Arabidopsis Thaliana] (GB:P50651;GB:Q9LUH0); similar to TSO2 (TSO2), ribonucleoside-diphosphate reductase [Arabidopsis thaliana] (TAIR:AT3G27060.1); similar to ribonucleotide reductase small subunit [Glycine max] (GB:AAD32302.1); contains InterPro domain Ribonucleotide reductase; (InterPro:IPR000358); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) -0.249814048048887 -2.25883776949306 0.0454319900793069 1 1.47575404266892 16.6536987419219 -0.249814048048887 0.124138089928249
AT3G13490_at 7.30060819963589 6.84671995318587 6.90505590092547 6.67789281680004 6.77061814529284 6.93141069730708 7.36694287164736 7.09138879716151 6.54605092987754 6.51646291726096 6.32104380638439 6.47126239856387 6.06558566712499 6.3897433878399 6.97267698662824 6.45775375557268 6.4533291590939 6.23671216568185 6.59979746425769 0.195069762453954 0.189030366309274 0.190065858245896 0.195692838351252 0.189499417871096 0.196030781518828 0.198148427547302 0.191655925765416 0.19704720616532 0.193037225046274 0.193946612108135 0.193970512863424 0.1936639885265 0.189561877236299 0.199158504000866 0.190994732061535 0.193171173132082 0.187756486764685 0.187756486764685 3 3|0 -|/ 4396009 4397027 4396651.222 4395732 4399332 - gene protein_coding_gene FALSE TRUE AT3G13490.1 OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase similar to lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT3G11710.1); similar to lysyl-tRNA synthetase [Synechocystis sp. PCC 6803] (GB:NP_440803.1); similar to Os02g0623500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047472.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364); contains InterPro domain Lysyl-tRNA synthetase, class-2; (InterPro:IPR002313) -0.231630459965234 -2.25803214269374 0.0454960144377618 1 1.47454059043383 13.4738882659078 -0.231630459965234 0.103746509074608
AT4G23240_at 3.76693327882098 3.75884544443121 3.39393143277686 2.986175510567 4.04589407823064 2.88837974245279 3.230193611116 3.01176884826616 4.15356173329153 3.69019894287092 3.17150162975454 3.12119483335867 3.32272415632776 3.58151900750879 2.96946397728648 3.37883813656771 2.98915441479182 2.60065280775220 3.32632996925387 0.196811089048138 0.206330803565581 0.208907840039187 0.196987138514254 0.212624083793364 0.214561176301764 0.199296878777704 0.202442228195388 0.222249639680498 0.197803620709182 0.202224361451028 0.194821694154504 0.198547332753466 0.199080398023469 0.193828400690951 0.194305684295127 0.201369834600916 0.204238215220701 0.196242226179250 4 4 - 12160542 12161063 12160714.182 12160512 12161964 - gene protein_coding_gene FALSE TRUE AT4G23240.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23290.2); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.347411266352687 -2.25796802245481 0.0455011138898747 1 1.47444401667171 6.81788757777801 -0.347411266352687 0.215720750943055
AT1G71130_at 6.55517680586488 7.00689596344515 6.80341286439157 6.61647965611224 7.88041920214887 7.82423905390993 7.07012431948979 6.59101820387727 6.99725311039695 6.60379131854744 7.04150221323783 6.42516482287105 6.30947879181625 7.23105485274329 6.52801059207853 7.03285381861373 7.29893493018677 6.1328502359863 6.60585275729255 0.205292296223743 0.201861536899842 0.202672527879148 0.202969467442752 0.217767585746854 0.210459897605569 0.204542188216780 0.201861536899842 0.217048231754405 0.204387635767324 0.203235447451945 0.204481463821307 0.218972667286425 0.201861536899842 0.206198615246303 0.214746774466701 0.215007861498153 0.212854300679397 0.206850640086596 1 1 + 26826574 26826996 26826791.273 26826450 26827192 + gene protein_coding_gene FALSE TRUE AT1G71130.1 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G22985.1); similar to TSI1 [Nicotiana tabacum] (GB:AAC14323.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.244841378875393 2.25787142811893 0.0455087970279244 1 1.47429853405613 13.7862775974570 0.244841378875393 0.118853799576140
AT1G80750_at 6.51829067297066 6.94474425433261 6.10133228975793 6.30462437078904 6.4079187089058 5.84101397312453 6.95051881102137 6.80611468457415 4.71254848586974 5.88723596593897 5.27016535879844 6.10349575573867 5.40290175936759 5.0076919276295 6.51555236684034 5.45357537379197 5.67547276759507 4.93519199124239 5.64469760907646 0.21111572351891 0.213034125251606 0.207953852481772 0.213034115672445 0.215693299032459 0.212147221971370 0.211748971304794 0.213816540104021 0.218907380778589 0.213093623704268 0.208948028832363 0.210286223522072 0.207953852481772 0.215253793774440 0.207992741133806 0.211940502012883 0.217325805098521 0.218101926739832 0.220193850538283 1 1|0 +|/ 30354513 30355220 30354793.1 30353693 30355456 + gene protein_coding_gene FALSE TRUE AT1G80750.1 60S ribosomal protein L7 (RPL7A) Identical to 60S ribosomal protein L7-1 (RPL7A) [Arabidopsis Thaliana] (GB:Q9SAI5); similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to putative 60S ribosomal protein L7-like protein [Solanum tuberosum] (GB:ABC01902.1); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998) -0.255258105541634 -2.25698525116659 0.0455793419440283 1 1.47296393174274 11.9644863538115 -0.255258105541634 0.130127885536820
AT4G39000_at 1.56459395866724 1.82807711976254 1.65029288290847 1.63420902978007 1.28269365318879 1.21491443024017 1.43782961233980 1.96214580099509 1.66276367753544 1.35948005847854 1.55140821998545 1.61383910466678 1.51746316203301 1.61107558664540 1.50632651657757 1.15491862207212 1.36954647226456 1.53154485420212 2.04734399060135 0.215064518358258 0.218929937168890 0.221041960383098 0.222343090409612 0.226841811574559 0.216522129467180 0.223082950552796 0.216440768540072 0.215835181032637 0.221942444233299 0.220506078309811 0.227029585293277 0.232519485822045 0.215064518358258 0.219776049687685 0.225877968878104 0.218402682229517 0.218242299074937 0.224440880971466 4 4 - 18171738 18172381 18172059.182 18171716 18173791 - gene protein_coding_gene FALSE TRUE AT4G39000.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 23 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 23) [Arabidopsis Thaliana] (GB:Q8GY58;GB:Q9SVJ3); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT4G39010.1); similar to endo-1,4-beta-glucanase precursor [Glycine max] (GB:ABC70310.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -0.230240691072182 -2.25657858814299 0.0456117498653518 1 1.47235154015248 3.15778350740743 -0.230240691072182 0.102261038594126
AT1G33800_at 1.48928381267334 1.32022958336497 1.47949185038652 1.5554533161819 1.26639818142720 1.55954557612338 1.72451523636106 1.28977454391393 1.56737991322476 0.9771808559199 2.08778976997413 1.54845514765471 1.33369485014038 1.62112916962814 1.85954296625594 1.28969947339694 1.88631474020281 2.11098750978579 1.28295479343926 0.222267100903507 0.214807546422471 0.214512712922689 0.222909907940336 0.212379581337117 0.220868562653990 0.213171923590082 0.216698345171507 0.221561462008981 0.212613395567861 0.223087213373084 0.21744680814806 0.217944307723560 0.217393470143370 0.212379581337117 0.217386250729634 0.220363462769221 0.218642548654416 0.224373521251046 1 1|0 +|/ 12261782 12262388 12262155.7 12261399 12262697 + gene protein_coding_gene FALSE TRUE AT1G33800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09990.1); similar to Os12g0204500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066378.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); similar to Os11g0242600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067591.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) 0.225317309734987 2.25644229848552 0.0456226160549597 1 1.47214630964175 2.95710662467462 0.225317309734987 0.0962414758985588
AT2G14520_at 3.31361362307383 2.68238542445651 3.62446890776799 3.15584417560393 2.63122403626337 2.69873725578339 4.19782984416762 4.30013144878108 3.7955350403093 4.51031028278113 4.19444890970464 4.55810602928757 4.23509042811656 4.04633937898199 4.16656570084878 4.82316584603172 3.45422759242491 4.26148615219132 4.13362988951212 0.195214098551106 0.205640708656847 0.205771517227752 0.198706421054045 0.195214098551106 0.197679937663996 0.197165779945469 0.197518309645152 0.195214098551106 0.198348319709293 0.195214098551106 0.205262680414379 0.198836075990602 0.195214098551106 0.198313630705412 0.199241196439363 0.202291589429526 0.201512982255595 0.197470109195845 2 2|0 -|/ 6189610 6190345 6189852.333 6189275 6191730 - gene protein_coding_gene FALSE TRUE AT2G14520.1 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G33700.1); similar to CBS [Medicago truncatula] (GB:ABE86592.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.262492237050419 -2.25618635569699 0.0456430287446573 1 1.47176091052477 7.50748958560353 -0.262492237050419 0.137693434597313
AT3G51600_at 12.8607641465689 12.9253764042854 12.8288644259084 12.8829302827311 13.1623631780265 13.2309247114254 13.0177069217246 13.2268235980968 12.8792882844833 13.100811523672 13.4949559426909 13.4266386182203 13.2859606633037 13.0839924370890 13.3741983070027 12.7552641006875 13.2727423309374 13.2674556692023 12.6649824655992 0.0621002956194628 0.0630361463505798 0.0643126960458684 0.0632127099314926 0.0631323106689939 0.0631255796969494 0.0646317325986475 0.0668718098736024 0.0720325761751945 0.0633777408784696 0.0620425302505055 0.0618861220418402 0.0637761782532642 0.0639991027506565 0.0622780833240727 0.0618861220418402 0.0658956072059026 0.0673234186912752 0.062398249715275 3 3|0 -|/ 19149821 19150045 19149931.9 19149373 19150231 - gene protein_coding_gene FALSE TRUE AT3G51600.1 LTP5 (LIPID TRANSFER PROTEIN 5); lipid transporter lipid transfer protein 5 Identical to Nonspecific lipid-transfer protein 5 precursor (LTP 5) (LTP5) [Arabidopsis Thaliana] (GB:Q9XFS7); similar to LP1 (nonspecific lipid transfer protein 1) [Arabidopsis thaliana] (TAIR:AT2G38540.1); similar to lipid transfer protein [Brassica oleracea] (GB:AAC63372.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.191029899622066 2.25484852073077 0.0457498704446903 1 1.46974660766813 26.0803917585425 0.191029899622066 0.0407793791902307
AT1G11940_at 2.06118970665978 1.82484476427879 2.1133175421259 2.16466818717680 1.87538666387353 2.08877114347760 1.82318887981134 2.03597047314800 1.41763950423387 1.84828851461279 2.00299978693173 2.17131970954726 1.91795128502902 2.21131216121267 2.04753574283673 1.75247330902875 1.38002128289825 2.06471273833215 1.71156861424152 0.172818515725103 0.166421752607918 0.169463782914989 0.166481043883204 0.162630027701295 0.172834507553981 0.163424055174345 0.171089666199129 0.172075130144727 0.168255335307361 0.168904257440736 0.166955680884129 0.169964416108979 0.162630027701295 0.171110957956693 0.164335822817695 0.165069497846498 0.172617705035181 0.173107329561717 1 0|1 /|- 4031804 4033101 4032344.5 4031572 4034076 - gene protein_coding_gene FALSE TRUE AT1G11940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62305.1); similar to Os01g0695200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043958.1); similar to Protein of unknown function DUF266, plant [Medicago truncatula] (GB:ABD28621.1); similar to Os05g0170000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054766.1); contains InterPro domain Protein of unknown function DUF266, plant; (InterPro:IPR004949) 0.204306317901663 2.25483753554966 0.045750748732566 1 1.4697300693698 3.79977031823887 0.204306317901663 0.0668682780120988
AT4G25230_at 7.10249093722322 7.27789419539093 7.15924132206603 6.95911952324301 7.28872148905772 6.95382795390589 6.69016244461095 6.98322118583939 5.91084623119041 5.85961650272572 6.41782269007138 6.07929583997573 5.96522635552564 6.54250257700893 6.1641200935696 5.93049917773773 5.87038109523895 6.56226311748195 5.71469311520261 0.212242448471065 0.203935002085645 0.210277208575396 0.208120230744697 0.207018357171433 0.211593536506804 0.210378151791507 0.210276891530513 0.224099384871703 0.20567539998398 0.202940523781727 0.202940523781727 0.215805201138222 0.207670143137642 0.206916553650533 0.204287340792101 0.216787698538134 0.222768937210061 0.202940523781727 4 4 + 12927514 12928308 12927798.636 12923929 12929166 + gene protein_coding_gene FALSE TRUE AT4G25230.1|AT4G25230.2 RIN2 (RPM1 INTERACTING PROTEIN 2); protein binding / zinc ion binding RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1. similar to RIN3 (RPM1 INTERACTING PROTEIN 3), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G51450.1); similar to hypothetical protein DDBDRAFT_0205731 [Dictyostelium discoideum AX4] (GB:XP_641804.1); similar to Os07g0484300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059649.1); contains InterPro domain Ubiquitin system component Cue; (InterPro:IPR003892); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.219956983294348 2.25363852960853 0.0458467091072712 1 1.46792509836448 13.0617844571001 0.219956983294348 0.089730494121696
AT2G42570_at 2.73421375913807 2.55609381569941 2.12052043102423 2.04132076193102 2.72492531461845 2.60816040192377 2.46845757595999 1.99304020020359 3.03733701698352 3.26085333456493 3.96271125417071 3.65450398399509 3.56797414833644 3.91574876562413 4.21289633275234 3.02890034979693 2.87859860696939 3.75863502811081 3.05033670786630 0.221193182907673 0.215678301031675 0.222949455252999 0.228687251937943 0.220850203776680 0.215678301031675 0.21928405994635 0.216830767950380 0.223299359945562 0.217948663978092 0.223056339508431 0.215678301031675 0.216492474091075 0.221686314469429 0.224485063469767 0.217492532061871 0.223196937498194 0.228404616760512 0.215678301031675 2 0|2 /|- 17724594 17725085 17724826.9 17724445 17727158 - gene protein_coding_gene FALSE TRUE AT2G42570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31110.2); similar to unknown [Pisum sativum] (GB:ABA29158.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.221050380935997 2.2534077541842 0.0458652009839607 1 1.4675777242887 5.77517740515785 0.221050380935997 0.0911876616429894
AT4G25520_at 5.07622096606057 4.90373316173968 4.68572667472682 4.93544543592251 5.47923730789928 5.43928824172496 4.87130616860176 4.72460139101017 5.12044782618739 4.59803403960707 5.21029376009939 5.38077890159421 5.61999505585453 4.9233423091623 4.23181763622151 5.45174832312827 5.43755592434659 4.76922170881622 5.19199730085234 0.269434267998664 0.255405613844178 0.260184584540664 0.260997983856586 0.258661165846884 0.26344674965829 0.261000311071904 0.253251012866396 0.253251012866396 0.256980390287887 0.272487120356779 0.25525208635055 0.26148286846003 0.255974310342372 0.253251012866396 0.253251012866396 0.253251012866396 0.256870172748561 0.270439873658264 4 4 - 13032540 13032850 13032730.222 13032192 13036220 - gene protein_coding_gene FALSE TRUE AT4G25520.1 transcriptional co-regulator family protein similar to transcriptional co-regulator family protein [Arabidopsis thaliana] (TAIR:AT4G25515.1); similar to SEU1 protein [Antirrhinum majus] (GB:CAF18247.1) 0.199446736701313 2.25328689715374 0.0458748880318005 1 1.46739580880731 10.0635718807700 0.199446736701313 0.0587442772672223
AT2G24350_at 2.31723079985115 2.19757541989190 2.02714017956068 1.86871902797972 1.83459297119063 2.34000770182123 2.67764677303798 1.78460083967766 3.22170189095682 3.00549750255237 2.54271078334151 2.59777270549647 2.25883787512091 2.32036445293679 2.83456326984264 2.59038257994861 2.44463212678996 2.60433361126993 2.50852102443958 0.218183067671541 0.214317208285430 0.216685024126266 0.216534432279073 0.220806658256606 0.227805384201833 0.235551282770851 0.214126994123622 0.245950849001398 0.220399774237992 0.216282810708258 0.221995976173028 0.218398583902221 0.216768146827192 0.215122148037722 0.220684197661995 0.219332004027235 0.214144250175769 0.231204953037112 2 2|0 +|/ 10370225 10371262 10370838.667 10368206 10371572 + gene protein_coding_gene FALSE TRUE AT2G24350.1 RNA recognition motif (RRM)-containing protein similar to RNA binding / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G12640.1); similar to Polyadenylate-binding protein 2-B (Poly(A)-binding protein 2-B) (Poly(A)-binding protein II-B) (PABII-B) (Polyadenylate-binding nuclear protein 1-B) (Nuclear poly(A)-binding protein 1-B) (nPABP2-B) (xPABPII-B) (XLnPABP2-B) (GB:Q7ZXB8); similar to Os04g0306800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052420.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.307177809183091 -2.25280040692676 0.0459139015304376 1 1.46666356720815 4.8489924549145 -0.307177809183091 0.180872323774324
AT2G43540_at 5.10879719407896 5.49223930834322 5.41728624019771 5.88610852466702 6.39480382535873 5.74415072579774 5.34711585366993 5.09980048512588 4.89637413636307 5.00364625809477 4.56226775401413 5.04799379144434 4.4090481634701 5.36652765629497 4.80681623044513 4.91006475929288 4.7725920614602 4.38969990359709 4.53907025292682 0.251403454443540 0.253525168208106 0.278701941284415 0.252100954627728 0.260938165580977 0.260303506025610 0.273970944069646 0.258969621941239 0.251403454443540 0.265848013279267 0.251403454443540 0.261232408399476 0.251403454443540 0.251571674884428 0.264754399862272 0.251403454443540 0.274504248339161 0.257448613878528 0.257656008436209 2 2 + 18079481 18079931 18079721.364 18079448 18080040 + gene protein_coding_gene FALSE TRUE AT2G43540.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91484.1) 0.284347596454136 2.25229343393354 0.0459545915104581 1 1.46590054616313 10.3593660225535 0.284347596454136 0.159673904136387
AT2G07630_at 0.29292680115026 0.602230688659063 0.323772381137286 0.638350431234214 0.232422975633085 0.420442582752551 0.270419681123597 0.306721557033144 0.96466874530771 0.601050496881274 0.150638277099407 0.259039729305636 0.717787999268423 -0.0623750534350877 0.733120544931135 -0.0270065005681421 0.766790609014981 0.465554481833224 0.957566069718329 0.20560547090648 0.208461415693349 0.211439663325778 0.2103751483272 0.20560547090648 0.208204054612534 0.206738465455345 0.206728562218189 0.219949858298565 0.211158201575587 0.209901959325884 0.207375281025082 0.211108180538959 0.207586776260907 0.206180587775969 0.207244912279146 0.20560547090648 0.207001184793113 0.209255251235388 2 2 - 3208792 3209451 3209044 3208707 3210806 - gene protein_coding_gene FALSE TRUE AT2G07630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31990.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.214989466170070 -2.25215853221296 0.0459654246395746 1 1.46569752061214 0.99418031979055 -0.214989466170070 0.0832278592585727
AT4G15630_at 8.75963150814063 9.02819316902937 8.60963585815897 8.92263267029726 9.60844547175665 8.93426557100297 10.283931795183 10.2066292176248 8.80648784738026 9.51149622220312 9.52903038738634 9.39730752288029 9.4223602757109 9.2691634209082 8.94737646018813 8.81858486093339 8.84563244765515 9.12172245028695 9.10648845325988 0.172702090629304 0.154111265700326 0.176735557423874 0.163128620966308 0.156576725855215 0.170428195781357 0.161679624363172 0.158064528147635 0.161853503129075 0.155608951143264 0.153749828877329 0.153749828877329 0.158204065533278 0.158245311871466 0.162906636127805 0.153749828877329 0.164173940425668 0.156518237832062 0.155229404603289 4 4|0 +|/ 8917648 8918628 8918264.6 8917428 8918850 + gene protein_coding_gene FALSE TRUE AT4G15630.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G15620.1); similar to Os01g0363300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043031.1); similar to hypothetical protein MA4_106O17.50 [Musa acuminata] (GB:ABF69990.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.261722571197288 -2.25185707580414 0.0459896416139740 1 1.46524384528852 18.4493646922449 -0.261722571197288 0.137421813638252
AT4G12460_at 5.25479031652234 4.70469364736579 5.60774348786427 5.15115090134027 6.46616088579943 5.65846032248263 5.67935588838498 5.44880799527417 5.02788258951413 5.18461375064516 5.32374215964184 5.11511905431799 5.4469850507329 5.59237401225922 5.23456877415916 5.80852672368269 5.43347261720935 4.65960331194159 5.20651002427728 0.189765043521715 0.183751428974000 0.183491621999716 0.183059481240778 0.181319595780586 0.190655245944986 0.187325353471184 0.187447053078370 0.189346254555412 0.185636107662218 0.181605052076051 0.192599441500782 0.183578108131742 0.188672368573866 0.182109215540339 0.181711222301288 0.184112855000725 0.185237992273884 0.180527726491244 4 4 + 7395151 7395992 7395599 7391274 7396506 + gene protein_coding_gene FALSE TRUE AT4G12460.1|AT4G12460.2 oxysterol binding| similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22540.1); similar to putative oxysterol-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK15443.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993)|similar to oxysterol binding [Arabidopsis thaliana] (TAIR:AT4G22540.3); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98450.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648) 0.318048556166199 2.25119711764843 0.0460427009630798 1 1.46425070793463 10.7296293061985 0.318048556166199 0.190879817150166
AT4G24880_at 4.75130848546857 4.69175198204749 4.98749996062455 4.8581837921817 4.51187523457755 4.90660204479466 4.42581939382804 4.10314596942504 4.10234845680593 4.25390097359396 4.08022071389567 4.47080507230029 4.16421148656222 4.06235670287596 3.74714044913683 4.08770262053381 4.5803429025462 3.84071371427374 3.67408752699839 0.206034667843540 0.220281508910541 0.216732788056863 0.206701354547796 0.208914119910926 0.222171027647712 0.213788171209738 0.208799742726744 0.222767250187827 0.211453381828355 0.208544402824108 0.206563713714253 0.208753921363446 0.207858308492665 0.214504332230465 0.204966625563677 0.215774506405069 0.210070540255651 0.212262456092498 4 4 + 12809444 12811195 12810482.636 12808530 12811387 + gene protein_coding_gene FALSE TRUE AT4G24880.1 similar to P0402A09.9 [Oryza sativa (japonica cultivar-group)] (GB:BAB62626.1); similar to Os01g0101300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041742.1); contains domain FAMILY NOT NAMED (PTHR13403); contains domain no description (G3D.2.90.10.10); contains domain SUBFAMILY NOT NAMED (PTHR13403:SF3); contains domain DNA ligase/mRNA capping enzyme, catalytic domain (SSF56091) 0.221054094492582 2.25017597905216 0.0461249143264653 1 1.46271422027387 8.72417287131763 0.221054094492582 0.0916041356341452
AT3G63250_at 6.50437579632245 6.32704423201928 6.65827106958077 6.41436362408346 6.93717154386651 7.11104294306356 6.21415610210667 6.06377559665389 6.31998063533767 6.49267599065466 6.3507248895271 6.16282233808704 6.4263728060456 6.50162489045094 6.50765149682771 6.20459374971054 6.69508904654256 6.22695524865096 6.63120878192521 0.1717117519302 0.178750964787712 0.179228691109245 0.172549993397193 0.177050805584747 0.174584590967845 0.175308223948848 0.176142304380058 0.179178979874460 0.178258380993005 0.171091210933956 0.170041435130924 0.181711195617323 0.173830161360642 0.170041435130924 0.178597480557391 0.186208834449080 0.178342607187347 0.180076273397049 3 3 - 23381555 23382552 23381995.909 23381283 23383657 - gene protein_coding_gene FALSE TRUE AT3G63250.1|AT3G63250.2 ATHMT-2/HMT-2; homocysteine S-methyltransferase Identical to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S- methyltransferase 2) (AtHMT-2) (HMT-2) [Arabidopsis Thaliana] (GB:Q9M1W4;GB:Q9SDL6); similar to HMT3 (Homocysteine S-methyltransferase 3), homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G22740.1); similar to selenocysteine methyltransferase [Brassica oleracea var. italica] (GB:AAX20123.1); contains InterPro domain Homocysteine S-methyltransferase; (InterPro:IPR003726) 0.203032601148730 2.24912258380311 0.0462098723533591 1 1.46112941559059 12.9616590022302 0.203032601148730 0.0656201026700694
AT1G08640_at 8.44419865609812 8.62797720483909 8.28228014106225 8.3643205954359 8.87075029630297 8.18459412407658 9.38263570563207 9.18633207393722 8.57335230601098 9.01665571635098 8.68292502160208 8.83589278417298 8.6975927010661 8.78515819044735 9.01644627408771 8.5704632177529 8.74355022571028 8.77269940432149 8.76034396365886 0.168696316422624 0.160779823391830 0.187142563765678 0.189685519763396 0.158017531785292 0.176801562700937 0.158264801516573 0.162374344439633 0.188047689558210 0.163739986632029 0.159995972831221 0.166129845880297 0.161025744154785 0.163645780564446 0.161488500531537 0.159731019155825 0.189541105956205 0.161344194806132 0.162466095678766 1 0|1 /|- 2748737 2750356 2749595.5 2748401 2751281 - gene protein_coding_gene FALSE TRUE AT1G08640.1 heat shock protein binding similar to Os10g0478100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064859.1); similar to Os08g0127600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060904.1); similar to unknown protein [Oryza sativa] (GB:AAG13571.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.252579652759515 -2.24842207223744 0.0462664528610404 1 1.46007563817100 17.4411569193741 -0.252579652759515 0.128323341356510
AT2G21770_at 1.49128950658053 1.58024247426255 1.87179581030737 1.26155349692067 1.53652175336579 1.62734170067257 2.03148932040903 1.42554634394381 2.02812326917757 2.54308598409731 1.70822899104479 1.97696825163387 2.04634086334244 2.18984991463073 1.88550561133532 2.03620477216094 1.79862713373191 1.85036936661368 2.71074668188506 0.213578960254352 0.209779415691941 0.211040879029181 0.226757335267077 0.209779415691941 0.210389181124382 0.213018453602791 0.214050515041397 0.218668530899719 0.215940270081317 0.216979980868291 0.210195061579058 0.209779415691941 0.217358021064638 0.21226738086148 0.212215666000948 0.218063605964308 0.213941528219439 0.211125154216964 2 2 + 9296010 9296532 9296279.455 9291917 9296616 + gene protein_coding_gene FALSE TRUE AT2G21770.1 CESA9 (CELLULASE SYNTHASE 9); transferase, transferring glycosyl groups cellulose synthase Identical to Probable cellulose synthase A catalytic subunit 9 [UDP-forming] (EC 2.4.1.12) (AtCesA-9) (CESA9) [Arabidopsis Thaliana] (GB:Q9SJ22); similar to CESA2 (CELLULASE SYNTHASE 2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G39350.1); similar to CESA6 (CELLULASE SYNTHASE 6), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G64740.1); similar to CESA5 (CELLULASE SYNTHASE 5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G09870.1); similar to cellulose synthase [Populus tremula x Populus tremuloides] (GB:AAT09898.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25581.1); similar to Zinc finger, RING-type; Cellulose synthase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE92734.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.274322751486991 -2.24840004404088 0.046268233162136 1 1.4600425028208 3.7851378048653 -0.274322751486991 0.150440497721728
AT2G35410_at 9.01697635151885 9.3193991431667 8.72459707641534 8.78642415956002 9.26044371832244 8.9064761462711 9.5626696037579 9.66860677464271 9.442856615186 9.55476811025635 9.4084364768531 9.7557320922121 9.26881986421437 9.22577308897034 9.80077464109809 9.63934194190006 9.10574243392848 9.54612214394803 9.27863175802016 0.108405473220198 0.112387893189116 0.130082983862003 0.118151216653029 0.108397223251455 0.116501007134520 0.111993218642484 0.111797501369989 0.115968221853736 0.107224220961197 0.109115536001421 0.108699645975253 0.108025183218787 0.114595791285221 0.109306802602750 0.109431506637963 0.125688480556864 0.107224220961197 0.110786756401765 2 2 + 14905900 14906368 14906239.455 14905403 14906829 + gene protein_coding_gene FALSE TRUE AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G09040.1); similar to RNA-binding re (GB:ABE85149.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.214501842779792 -2.24637140763994 0.0464324680007025 1 1.45699139710352 18.6028299533126 -0.214501842779792 0.083317843080235
AT3G54590_at 1.40448116724622 2.33396921889379 1.72981880406496 2.27364136491949 1.62488952117634 1.98168812419854 1.49843820993127 2.44521628626386 2.69073857735759 2.51761273787248 1.91755576679853 2.42917528463093 2.40270918742894 2.12540229662967 1.67637935112244 1.78379405655007 0.813907629359258 3.21787036514089 3.23227063888768 0.301422538352218 0.312520353251911 0.318795674363920 0.304345661766678 0.327583258545496 0.301422538352218 0.304207028333276 0.310488078273113 0.329530529906318 0.336982993771073 0.311396666217164 0.301422538352218 0.316533615772121 0.310025470777036 0.318350418687993 0.301422538352218 0.329534456210754 0.312750192698631 0.301422538352218 3 3 + 20219169 20219372 20219267.5 20217219 20219450 + gene protein_coding_gene FALSE TRUE AT3G54590.1 ATHRGP1 (ATHRGP1); structural constituent of cell wall Encodes a hydroxyproline-rich glycoprotein. Identical to Extensin-2 precursor (AtExt2) (Cell wall hydroxyproline-rich glycoprotein 1) (HRGP1) (EXT2) [Arabidopsis Thaliana] (GB:Q9M1G9;GB:Q9CAZ9); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G23720.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G54580.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G28550.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.392854088079472 -2.24567813236627 0.0464887224794516 1 1.45594888878546 4.3412127838769 -0.392854088079472 0.255710444792192
AT2G21880_at 5.15768181804861 5.33992969926972 5.40569603967436 5.27962468548257 5.67646813209229 5.20351628361823 5.58646352041034 5.44820278745392 4.85135859022917 4.91632597643449 5.90066833904426 5.0729366301695 6.01499775180293 6.49411345236912 4.84371647696823 5.23635073534285 5.50146557861393 5.39672021141706 5.59762557629696 0.227988932954288 0.230792069015853 0.230961583446302 0.235948465977302 0.226201610402806 0.228226742166283 0.229910231836144 0.231091513260431 0.237239512950784 0.229180598143354 0.232206201535173 0.231327501582849 0.226669208857495 0.230676018723918 0.240022196368866 0.231568864938615 0.237773576918627 0.229741465826848 0.229930662786279 2 2|0 -|/ 9332022 9332801 9332460.3 9331713 9333401 - gene protein_coding_gene FALSE TRUE AT2G21880.1 AtRABG2/AtRab7A (Arabidopsis Rab GTPase homolog G2); GTP binding similar to AtRABG3a, GTP binding [Arabidopsis thaliana] (TAIR:AT4G09720.1); similar to Ras-related protein Rab7 (GB:Q43463); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.222053964116829 2.24540559055471 0.0465108552568263 1 1.45553908233329 10.7268934680660 0.222053964116829 0.0934988192719434
AT3G17510_at 10.0417756654738 10.2858911487016 10.4881148884417 10.5003895980842 10.9083679421534 10.7069031344788 11.2216749389984 11.2358579887761 10.6498961291358 11.1624357341733 10.5503810862510 10.6820149347741 10.8692745415916 10.6233710924899 10.3162848102267 11.0102158101755 11.0014213351925 10.5854018316789 11.3455354627482 0.0940578234609091 0.091185880828908 0.091185880828908 0.091185880828908 0.0934805108415876 0.091185880828908 0.0953197805680674 0.0922847709482206 0.102100508082558 0.091185880828908 0.0941767756057068 0.091185880828908 0.0915569511595053 0.0913825573144271 0.0982602445092843 0.091834594257304 0.0967189657620166 0.0984428457606512 0.0914364839960838 3 3 - 5989324 5990267 5989895.455 5988997 5992918 - gene protein_coding_gene FALSE TRUE AT3G17510.1|AT3G17510.2 CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2. Identical to CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (SOS2- like protein kinase PKS13) (SNF1-related kinase 3.16) (CIPK1) [Arabidopsis Thaliana] (GB:Q8RWC9;GB:Q9FUK2;GB:Q9LUP6); similar to CIPK17 (CIPK17), kinase [Arabidopsis thaliana] (TAIR:AT1G48260.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (SOS2- like protein kinase PKS13) (SNF1-related kinase 3.16) (CIPK1) [Arabidopsis Thaliana] (GB:Q8RWC9;GB:Q9FUK2;GB:Q9LUP6); similar to CIPK17 (CIPK17), kinase [Arabidopsis thaliana] (TAIR:AT1G48260.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.19659140320974 -2.24432467420514 0.0465987347022819 1 1.45391391449136 21.5523309742968 -0.19659140320974 0.0548701367133214
AT1G73010_at 1.78783834774953 1.69051381528285 2.21326460131475 2.15522174936146 2.13202231134368 2.25191079803880 1.98638621910775 1.60355886654329 1.34423360006709 1.91391879896594 1.62033956892637 1.92313846195070 2.15449467946147 1.42487531702412 1.64951202249200 1.4596518304849 1.87387138373285 1.07147819174360 1.70653156413136 0.222273292058479 0.217954272231360 0.224037094225359 0.226956421800815 0.214829730303132 0.221297161813096 0.214829730303132 0.214829730303132 0.224769671585325 0.216151810006789 0.217808411179961 0.214829730303132 0.219763324250847 0.231649880017552 0.220428769530756 0.219061592859387 0.214829730303132 0.217856965886473 0.214829730303132 1 1 - 27468442 27469176 27468875.091 27468233 27469917 - gene protein_coding_gene FALSE TRUE AT1G73010.1 phosphoric monoester hydrolase similar to phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT1G17710.1); similar to putative acid phosphatase [Lycopersicon esculentum] (GB:AAG40473.1); contains InterPro domain HAD-superfamily hydrolase subfamily IB, PSPase-like; (InterPro:IPR006383); contains InterPro domain HAD-superfamily subfamily IB hydrolase, hypothetical 1; (InterPro:IPR006384) 0.206653040216342 2.24421949036208 0.046607294739781 1 1.45375578222215 3.62862200677533 0.206653040216342 0.0721393198984413
AT3G15160_at 6.38469088146858 6.51936230451938 5.85832404249515 5.59246672521667 6.96788990275873 6.16955142308796 5.36274658838254 4.97699459078078 6.31642502576188 6.42824013147569 6.62712627092269 7.28351563922828 6.11569479770613 6.66792757404627 6.87039925740011 6.62103785977837 5.95810094363834 6.63054360373603 6.34046337806944 0.209245591528354 0.206312494991393 0.208057662912476 0.209780687989083 0.200336150310626 0.200394453772753 0.208693303811823 0.210772016677074 0.211132084641389 0.209736465910235 0.200336150310626 0.201237012095423 0.205302559404948 0.201702134918317 0.228680405163708 0.202180218367743 0.203776657020544 0.220647739678086 0.205033024622411 3 3|0 +|/ 5107132 5108259 5107751.444 5104374 5108480 + gene protein_coding_gene FALSE TRUE AT3G15160.1 similar to hypothetical protein DDBDRAFT_0219917 [Dictyostelium discoideum AX4] (GB:XP_628907.1); similar to Os04g0626900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053950.1); similar to OSJNBb0060E08.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04752.3); contains domain ARM repeat (SSF48371) 0.285596581819916 2.24394889816185 0.0466293229187262 1 1.45334898708741 12.4582546848767 0.285596581819916 0.161874618136687
AT1G52990_at 2.10457968972645 1.77539883635625 1.35211502586964 2.06834539654878 1.64922997703382 2.05331650382318 2.76947260892646 2.87654386547051 2.71848426531347 2.54631186503913 2.63169884223013 2.33512461093832 2.62593956093382 2.46521121152761 2.42574487828154 2.46882787794267 2.58071893494085 2.63873120971252 2.16439871940512 0.228619272650074 0.231463456763625 0.238953066062388 0.241219556006654 0.249046151467605 0.240975879988208 0.239555047586107 0.236352920437393 0.244880330682022 0.230989878895576 0.234508767767205 0.231397300137023 0.231407758976242 0.234534162714608 0.231659842216211 0.228619272650074 0.245291315860925 0.230611905941366 0.233764411985464 1 1 - 19744240 19746475 19745198.818 19744171 19747117 - gene protein_coding_gene FALSE TRUE AT1G52990.1 thioredoxin family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23320.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.2778228333701 -2.24383528620848 0.0466385747369939 1 1.45317819283161 4.58007420000239 -0.2778228333701 0.154406674905154
AT2G17090_at 1.90679391037427 2.24148948229472 2.26705344314220 2.31644990745021 1.80564313250434 1.85069433298951 1.86423185103692 2.04645863517727 2.28993367659733 2.66367708041558 2.13286835337921 1.86712661273183 2.03470585911238 2.00909716217064 1.85988274911899 1.84571343992397 2.28058048185183 2.3463003411247 2.54325799074524 0.216801717668823 0.221539921831251 0.220291752782695 0.216314509902077 0.221940148559843 0.226568691287300 0.214904046433776 0.220939621313432 0.217500489859477 0.217938504003434 0.219642723535175 0.214904046433776 0.217297013708061 0.228077776350797 0.223065763404063 0.215413043253075 0.230632152416296 0.225842928060695 0.229249869501277 2 2 - 7442245 7442939 7442475.545 7442170 7444380 - gene protein_coding_gene FALSE TRUE AT2G17090.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35230.1); similar to Os03g0132800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048870.1); similar to protein kinase-like protein [Oryza sativa] (GB:AAG13605.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.203352570012629 -2.24372092579717 0.0466478892830423 1 1.45300627605131 4.31034714896089 -0.203352570012629 0.0669561326937171
AT3G09970_at 7.42432408236618 7.84682382513066 7.56205909662748 7.80815708075239 7.90307735477953 7.13132460201502 7.61202597061861 7.47201749136482 7.07210380025664 7.3726592748233 6.66206764849333 7.00668555946408 6.55407594649188 6.84738873013457 6.19795006235304 7.03863223675994 6.50657712132536 6.33164181309374 7.22150567472526 0.242537276244184 0.227277501682173 0.237015278243076 0.234754700866518 0.234585143128098 0.233959466764223 0.230167728655518 0.222447089974846 0.233928338230183 0.228866405191662 0.233067945980924 0.222473534967290 0.228615190155066 0.232066953497603 0.239858691729328 0.222328205711634 0.234115932944564 0.232736833954322 0.237421950339953 3 3|0 +|/ 3064226 3065301 3064971.3 3063779 3065580 + gene protein_coding_gene FALSE TRUE AT3G09970.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT3G09960.1); similar to ACI14 [Lycopersicon esculentum] (GB:AAY97872.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.283302751165186 -2.24174351362420 0.0468092300515298 1 1.45003407317753 14.5275846744733 -0.283302751165186 0.159949225057248
AT1G15530_at 1.69563921801438 1.44957218520494 1.97877946021876 1.70022027734702 1.57999538468487 1.75169279256335 1.89523566026328 1.67315031048103 2.08748004017321 1.79245930577327 2.33273976235471 2.41833015911772 2.19377657545938 2.45030205732261 2.64804497177083 2.32566352591401 2.15149203332502 2.11868676143836 2.0600233069191 0.200613607031731 0.202199669852851 0.205608790263699 0.197615228051819 0.200437895796804 0.205806154737558 0.197722617105969 0.201674735974964 0.20345177799881 0.201117374732092 0.203020353689303 0.210154215699998 0.202505689237338 0.203427992207765 0.199319501814671 0.197615228051819 0.197615228051819 0.199929877906067 0.199531604088107 1 1 - 5339997 5340406 5340193 5339956 5341926 - gene protein_coding_gene FALSE TRUE AT1G15530.1 receptor lectin kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G55550.1); similar to OSJNBa0081C01.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41144.2); similar to Os03g0823000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051739.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220) 0.212082282547617 2.24121834990185 0.0468521690051163 1 1.44924484517801 3.87046917699372 0.212082282547617 0.0806044904916046
AT4G30070_at 2.40057564294252 1.81070234362907 2.06703026158090 2.51926188507291 1.86738586978857 1.87618478264578 1.28307387070207 1.79959787353759 1.95871842317582 1.71339754192699 1.83586361214104 2.15783304041577 2.50044097263176 2.45067422711984 2.42503366071706 2.12166545012696 2.07103997655337 2.07215381056536 2.03920231254757 0.222306217860918 0.231594183226810 0.228378563443291 0.23964829955836 0.224423165293190 0.232230168044383 0.225196901425095 0.228167433635808 0.230127215689883 0.224454048988932 0.226260293701385 0.222306217860918 0.225789449711803 0.226432942114966 0.224971358398392 0.22718036633191 0.227151876872997 0.224358499224726 0.236008077837768 4 4 + 14697557 14698296 14698045.455 14697495 14698436 + gene protein_coding_gene FALSE TRUE AT4G30070.1 LCR59 (Low-molecular-weight cysteine-rich 59) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Identical to Putative low-molecular-weight cysteine-rich protein LCR59 precursor (LCR59) [Arabidopsis Thaliana] (GB:P82773); similar to LCR58 (Low-molecular-weight cysteine-rich 58) [Arabidopsis thaliana] (TAIR:AT5G38317.1); similar to hypothetical protein MtrDRAFT_AC135415g34v1 [Medicago truncatula] (GB:ABE81922.1); similar to putative low-molecular-weight cysteine-rich protein lcr19 precursor [Medicago truncatula] (GB:ABD33391.1) 0.279771800818163 2.24095186519464 0.0468739720345399 1 1.44884438736346 4.00703199273777 0.279771800818163 0.156644433770163
AT3G23640_at 9.3461105854615 9.48451591988979 9.4455226996365 9.34996074991661 10.1614553660322 9.848039811559 9.0377939480463 9.01534415264739 8.72761551684881 9.31010055458808 9.24809578325366 9.02172864595856 9.5208035467042 9.0600839301153 8.9382295371534 9.14622952091862 9.015998173132 9.19734450214077 9.63393878058366 0.130980437368180 0.117548150177739 0.128717771013564 0.126107230118179 0.123797772750629 0.123900975118064 0.127636914808701 0.119417776948123 0.129420299540398 0.123356494637168 0.119446313490502 0.119250324961898 0.121410441155907 0.131163269828260 0.133812101690904 0.122100685173674 0.135706267158363 0.127753503546133 0.119958775479283 3 3|0 +|/ 8508078 8509296 8508727 8501935 8509591 + gene protein_coding_gene FALSE TRUE AT3G23640.1 HGL1 (HETEROGLYCAN GLUCOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds similar to RSW3 (RADIAL SWELLING 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G63840.1); similar to Os07g0421300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059483.1); similar to Os07g0420700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059480.1); similar to putative alpha-glucosidase II [Oryza sativa (japonica cultivar-group)] (GB:BAD31751.1); contains InterPro domain Glycoside hydrolase, family 31; (InterPro:IPR000322) 0.199991379761695 2.24095070584373 0.0468740669106248 1 1.44884264518952 18.6448174819465 0.199991379761695 0.0616767953016623
AT2G37590_at 1.95440579156406 2.87639297267329 2.24520974040198 2.58645799470862 2.372973734615 2.42360553463681 3.0513094550758 2.71018856669407 3.09304167041110 3.07544781493862 2.37946453928700 2.42203729678244 2.72225542497238 2.81469347066883 2.53121692408716 2.83103036513637 2.48710857028979 2.89296326086574 2.84318030072913 0.228422790838573 0.237030561019532 0.235745869485297 0.240322898489526 0.227138962996339 0.238838586280368 0.234314087350858 0.245144431954788 0.237895615334176 0.225624727292453 0.225624727292453 0.233213304807217 0.230429314925489 0.227837376621969 0.238896956917255 0.246434447975754 0.246314049908279 0.243034479395434 0.233656822084184 2 2 + 15777053 15777540 15777320.727 15776199 15777697 + gene protein_coding_gene FALSE TRUE AT2G37590.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF2.4 (AtDOF2.4) (DOF2.4) [Arabidopsis Thaliana] (GB:O80928); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02460.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE94576.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.304903071296469 -2.24073452852374 0.0468917611131061 1 1.44851779708544 5.34706105389829 -0.304903071296469 0.180295867863048
AT4G18010_at 7.06481960047912 7.29978685264443 6.73382707288622 6.59090742822092 7.00804060084169 6.25433191430041 5.21830174296701 4.92585427917798 4.56894299245946 4.77644149640011 5.03925205840416 4.12525576631778 4.43296236072166 5.00256561798259 3.73970271134744 5.09394289782576 4.7648901859119 4.40719608781618 4.3164212689084 0.250160902802321 0.254188114748757 0.256402290988307 0.264764382015196 0.260201020582701 0.250160902802321 0.258840405777046 0.255781544103653 0.255699503128650 0.252745588932645 0.250160902802321 0.250160902802321 0.253166723833188 0.258952705613697 0.262468531539212 0.250160902802321 0.255350734138133 0.268703837767352 0.251272876159416 4 4|0 -|/ 9991208 9992085 9991726 9991033 9994432 - gene protein_coding_gene FALSE TRUE AT4G18010.1|AT4G18010.2 IP5PII (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE II); inositol-polyphosphate 5-phosphatase inositol polyphosphate 5-phosphatase II (IP5PII) mRNA, Identical to Type I inositol-1,4,5-trisphosphate 5-phosphatase 2 (EC 3.1.3.56) (At5PTase2) (IP5P2) [Arabidopsis Thaliana] (GB:Q9FUR2;GB:O49700;GB:Q9SNF1;GB:Q9ZSC3); similar to inositol polyphosphate 5-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G71710.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE93059.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135)|Identical to Type I inositol-1,4,5-trisphosphate 5-phosphatase 2 (EC 3.1.3.56) (At5PTase2) (IP5P2) [Arabidopsis Thaliana] (GB:Q9FUR2;GB:O49700;GB:Q9SNF1;GB:Q9ZSC3); similar to inositol polyphosphate 5-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G71710.1); similar to IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I), inositol-polyphosphate 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G34120.2); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE93059.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.270685921723391 2.24064505441533 0.0468990864796143 1 1.44838334777218 10.9518117931299 0.270685921723391 0.147780773402317
AT1G77400_at 2.45682543459463 2.79293639981659 1.62861803967937 2.25012812676881 2.22457121733618 2.1392398181951 2.39873767383625 2.72461207330941 2.12791270341362 2.41332006530703 2.21878858165454 2.39157064057071 2.49648340042482 2.09723309861468 2.26011073851079 2.27683624054223 2.47142675213773 2.63866457707328 2.48098719459773 0.217703231984823 0.219042486445062 0.221483091646130 0.220991371771227 0.225268011903426 0.217093057302403 0.235383249122358 0.226647181369484 0.221975945157981 0.217093057302403 0.217380675437308 0.221543663754379 0.217847956011692 0.223152815544154 0.225324073809817 0.217093057302403 0.224167900220093 0.220966276400564 0.218374978138298 1 1 + 29090892 29091382 29091140.909 29090705 29091758 + gene protein_coding_gene FALSE TRUE AT1G77400.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G21695.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79816.1) -0.258494664488023 -2.24045489634087 0.0469146586234497 1 1.44809760994079 4.67552321867399 -0.258494664488023 0.135461122419720
AT2G39140_at 4.67540268195098 5.10874551130004 4.82554803037795 4.47609100778955 5.1592184794786 5.15321159709757 4.91217561673049 4.82902557711094 4.74293331912031 4.87613312364626 3.98637927557082 4.17004140208869 4.48091724944871 4.18265244253157 4.80530554131848 4.51771122483763 4.67643602956317 4.44440106083307 5.01915021799612 0.156569292822182 0.160623054805916 0.156853961693495 0.153088109909598 0.15980274276472 0.163781778136378 0.160751642401539 0.156308319738931 0.157233546486497 0.156250782099675 0.155210129574444 0.153981116859118 0.153720601653462 0.156287728291957 0.155127617770424 0.151772450786294 0.160205841687111 0.151943918538507 0.155599992097394 2 2|0 +|/ 16337708 16340204 16339025.312 16337261 16340438 + gene protein_coding_gene FALSE TRUE AT2G39140.1 pseudouridine synthase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43340.1); similar to pseudouridine synthase family protein (ISS) [Ostreococcus tauri] (GB:CAL53753.1); similar to Os03g0152700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048994.1); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Pseudouridine synthase, Rsu; (InterPro:IPR000748) -0.224622546700371 -2.24014007594109 0.046940450329709 1 1.44762456656929 9.5361203536603 -0.224622546700371 0.0974124426068183
AT2G46130_at 1.47482569435617 1.46354337042674 1.10489791626286 1.32475996345776 1.06713150564732 1.52232913195231 1.35866874045851 1.65279099819348 1.71127159385208 1.86110234182 1.74952462462123 1.44268728301903 1.20390345382923 1.40539963377118 0.988972845781406 1.11066799025364 1.64027141792032 1.53859018901020 1.25082795009572 0.211718396849508 0.211289570513728 0.215017424477545 0.206027006303489 0.213861433079542 0.210259633031172 0.212518372704377 0.205221379107400 0.209610069757228 0.212610974783953 0.20809613126476 0.209296184977687 0.210575100594224 0.209169013866875 0.205559367343715 0.206904773195506 0.211878650499300 0.208520081980106 0.210135562189703 2 2|0 +|/ 18964368 18964713 18964556 18964299 18964984 + gene protein_coding_gene FALSE TRUE AT2G46130.1|AT2G46130.2 WRKY43 (WRKY DNA-binding protein 43); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 43 (WRKY DNA-binding protein 43) (WRKY43) [Arabidopsis Thaliana] (GB:Q8GY11;GB:O82356;GB:Q8VWZ0); similar to WRKY24 (WRKY DNA-binding protein 24), transcription factor [Arabidopsis thaliana] (TAIR:AT5G41570.1); similar to WRKY transcription factor-b [Capsicum annuum] (GB:AAW66459.1); similar to Os01g0734000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044163.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 43 (WRKY DNA-binding protein 43) (WRKY43) [Arabidopsis Thaliana] (GB:Q8GY11;GB:O82356;GB:Q8VWZ0); similar to WRKY24 (WRKY DNA-binding protein 24), transcription factor [Arabidopsis thaliana] (TAIR:AT5G41570.1); similar to WRKY transcription factor-b [Capsicum annuum] (GB:AAW66459.1); similar to WRKY-type DNA binding protein [Solanum tuberosum] (GB:BAC23031.1); similar to Os01g0734000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044163.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.227704676837739 -2.24003468024968 0.0469490879242152 1 1.44746620544842 2.86748648594358 -0.227704676837739 0.101230232244248
AT1G48920_at 9.92192417069442 10.2046491975920 9.7986067266939 9.84513545730442 9.7132441050375 9.44781296924643 9.9456213459285 10.2846945591254 9.27105375285236 9.58600976511374 9.36901304624154 9.69913887499227 9.22809583050863 9.30172067555483 9.66183760410704 9.3982266707702 9.28053268374566 9.19562800275215 9.46476093173861 0.134779062082999 0.137828717611628 0.139219153377199 0.133293398590590 0.137128025433691 0.14656957441317 0.138911865731065 0.134236007950904 0.140826567066696 0.143921489037132 0.137804909641436 0.136446581170827 0.147947132182688 0.145291581872841 0.138942306579649 0.138098517903208 0.139676698268874 0.143762086986795 0.138718462536511 1 1|0 +|/ 18104209 18105066 18104629.444 18101763 18105291 + gene protein_coding_gene FALSE TRUE AT1G48920.1 nucleolin, putative The predominant form of the two nucleolin genes in Arabidopsis. Plays a role in ribosome synthesis. Knock-out mutant plants accumulate increased level of unprocessed rRNA. The sugar-induced expression of ribosome proteins are reduced in the mutants. similar to ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G18610.1); similar to tobacco nucleolin [Nicotiana tabacum] (GB:BAC02896.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.218428240041030 -2.23969655579639 0.0469768088516691 1 1.44695817562086 19.3114022281956 -0.218428240041030 0.0895083649003184
AT1G67140_at 6.25733276308735 6.62204422480228 6.11384408424832 6.28131461913165 6.69238576206287 6.29743535578113 6.4408284600135 6.31333984703843 6.33867125762882 6.87998985709296 6.67399280547747 6.55095110462793 5.95190012852698 6.53668761064676 6.2822245513634 6.56102846261789 5.40443227375977 5.98160007650824 6.68278742753742 0.189817840745555 0.188831540311975 0.197905288907732 0.191913454327219 0.186770602533078 0.207041665065239 0.187582257900957 0.186782653360691 0.197702824702624 0.190507051202430 0.190158945396112 0.186115865595597 0.189967157046284 0.188381477480890 0.187256429941614 0.190254552461271 0.209864428582103 0.190902264591496 0.190768912437392 1 1 - 25104756 25105252 25105015.545 25104571 25121035 - gene protein_coding_gene FALSE TRUE AT1G67140.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os06g0505100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057715.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45654.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.226552711245708 -2.23931967572030 0.0470077256307657 1 1.44639194322249 12.8156497932428 -0.226552711245708 0.099908160986035
AT3G21790_at 6.85437165291594 6.87227374270684 7.0160720177703 6.57221097615299 7.10004199580729 6.62515901949992 5.61518684696414 5.6874759240517 5.31900594437553 6.06835780810621 4.5086815548517 4.63604645872977 5.04936998707987 4.9923082561937 4.52651693498895 5.31735315385996 5.00677136862182 4.1194611142517 6.06123898965425 0.218628556398135 0.222315827363344 0.212257794608482 0.221505707177574 0.222405847792580 0.222677538622577 0.210825726811011 0.222489205956518 0.223911991518035 0.218936977864842 0.215805644716454 0.222854967871784 0.218265029218355 0.215589983492102 0.220146814557783 0.210825726811011 0.217088805689667 0.218672645488810 0.216204979057918 3 3 - 7677003 7677499 7677247.091 7676934 7678421 - gene protein_coding_gene FALSE TRUE AT3G21790.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21800.1); similar to UDP-glycosyltransferase 71E1 [Stevia rebaudiana] (GB:AAR06914.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.237796674912591 -2.23910436876666 0.0470253967619006 1 1.44606847463631 11.8357312807924 -0.237796674912591 0.113224928249151
AT1G54310_at 4.55345991763445 4.05740001977083 3.63579364947865 3.48470634640970 3.91194124964024 4.5707361794473 4.98284797509162 4.82558314046209 3.37466182577547 4.04458672531549 3.85785387808797 3.70386261968707 3.73734716441788 3.5171211964871 4.07339769647092 3.81555147967117 3.63728695352621 3.73069899485094 3.36790722643719 0.231565783746395 0.232783026977660 0.225772482961342 0.227632170462431 0.229553709926540 0.221419491402698 0.230163381628041 0.227177049536746 0.241438245221867 0.221571150356476 0.223698355268377 0.221327983177634 0.224298367430339 0.230640992258137 0.230425293397684 0.221327983177634 0.232533869176688 0.229573621035767 0.231429367202068 1 1|0 +|/ 20277619 20278321 20277923.889 20277234 20279241 + gene protein_coding_gene FALSE TRUE AT1G54310.1|AT1G54310.2 RNA binding similar to Os02g0173700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046042.1); similar to predicted serine-pyruvate aminotransferase (ISS) [Ostreococcus tauri] (GB:CAL58570.1); contains InterPro domain PUA; (InterPro:IPR002478)|similar to Os02g0173700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046042.1); similar to SAM-dependent methyltransferase [Le (GB:YP_095222.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain PUA; (InterPro:IPR002478) -0.270303500802626 -2.23882435344897 0.0470483883041362 1 1.44564780495452 7.9302378549465 -0.270303500802626 0.147619359425371
AT4G13100_at 6.46211605978442 6.24011861843135 6.02525625757284 5.57776353304229 6.5722993902637 5.89540394967072 6.8398111583203 6.34915342901061 5.89380832086303 6.50217706431059 5.77221541586246 6.7417348045414 6.01782705519452 6.02116477797726 5.90047707169145 6.68830689718091 6.65048594630753 5.70343019759336 6.55123828010026 0.244517044059337 0.241585750593574 0.249898952391612 0.252509540180975 0.242283785212403 0.245652053672952 0.246900081848418 0.249928545173543 0.246166368197299 0.248169074193854 0.238451038719482 0.242015423007915 0.244619021265826 0.255967680871315 0.241728639279818 0.241824525715681 0.245622828864650 0.238431138895789 0.241751660294870 4 4 - 7636570 7637283 7637016.182 7636435 7639034 - gene protein_coding_gene FALSE TRUE AT4G13100.1|AT4G13100.2|AT4G13100.3 zinc finger (C3HC4-type RING finger) family protein similar to calmodulin binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G25030.2); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE85544.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to calmodulin binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G25030.2); similar to zinc finger-like protein [Phaseolus vulgaris] (GB:AAO49653.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.291952492356816 -2.23865571283405 0.0470622402741474 1 1.44539446228455 12.4965885457878 -0.291952492356816 0.168536501084620
AT2G39360_at 5.57470556285637 6.14070022001288 5.6864751620374 5.93910700259306 5.54184313930769 5.43481877322681 5.14604109854857 5.43951969728979 6.55473954585919 5.53398678943114 6.0355948185432 5.81022665062507 5.46007686058507 5.71710218197903 5.05090040888084 5.07316311498564 4.18047864177117 5.30768209406913 5.58878053900374 0.222235290724814 0.214252764474869 0.221613948912416 0.221207664119643 0.216720327916049 0.232656322644511 0.213770175521683 0.216023678755659 0.223825133908170 0.217147725307398 0.213018371722443 0.215590941246086 0.215708819285297 0.223796471211795 0.219424268245348 0.213913803882667 0.224600988303379 0.219139027500875 0.214926028829267 2 2 - 16444696 16445191 16444907.091 16444550 16447232 - gene protein_coding_gene FALSE TRUE AT2G39360.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46290.1); similar to receptor-like protein kinase [Catharanthus roseus] (GB:CAA97692.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT07653.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.24388991019356 -2.23857619075714 0.0470687734938751 1 1.44527500117483 11.2238540259147 -0.24388991019356 0.12011498472095
AT2G21960_at 9.4331203966014 9.43547702807248 9.2394737690911 9.02366112161623 9.62768274584165 9.3480727947413 10.0294725996694 10.0470208106906 10.1247596264785 9.96562730859192 10.0304867974243 10.0679462351844 9.75046602723188 10.1089486508381 9.98988687377696 10.1349657454245 9.7881750159578 10.1337983462347 9.828133560074 0.124101981029138 0.113803103110064 0.118361733860325 0.123194052527225 0.120882727705869 0.117757919655685 0.122661136340337 0.126707456022259 0.118620971919337 0.116503135506336 0.118527343604411 0.115525867547650 0.118875804731376 0.116551402773626 0.121569770931338 0.113803103110064 0.119182110585527 0.116162445350675 0.119077040409985 2 2|0 +|/ 9363062 9364014 9363385.571 9361922 9364171 + gene protein_coding_gene FALSE TRUE AT2G21960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56180.1); similar to Os04g0639300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054033.1); similar to OSJNBb0003B01.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE03618.3); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58559.1) -0.199403027237472 -2.23737718448747 0.0471673845652548 1 1.44347396490858 19.5097098465691 -0.199403027237472 0.061201269844521
AT1G44810_at 6.18504545427639 6.33540611776116 6.21695919337865 6.25372803404891 6.86760771789568 6.0836405900933 5.9309846404526 6.31358436370852 6.11230648162288 6.11906756354849 6.55590034570393 6.41045700471979 6.16497472504933 6.32832653307371 6.30199084513816 6.46334784070554 6.23129405315512 6.55297743081933 5.73440103232181 0.198090327714446 0.190726006871517 0.197548801825753 0.198108331906348 0.194095361241238 0.190214323216906 0.191920492041281 0.192336111065869 0.209036225715568 0.189787621287602 0.194208415270018 0.197998708053209 0.191430937610001 0.200605203313126 0.195967584404255 0.192477480147424 0.206151304762037 0.204400632685272 0.196310080823892 1 1 + 16926492 16926913 16926704.455 16925983 16927261 + gene protein_coding_gene FALSE TRUE AT1G44810.1 transcription regulator similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT4G00250.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.275897822301177 2.2372619886228 0.0471768691553627 1 1.44330094384569 12.4557446588486 0.275897822301177 0.153321674277902
AT1G13680_at 0.982797695426746 0.884228031627668 0.928196044002288 0.87925615037399 0.77276537174711 1.27725412218739 0.927810114362866 1.49258344429198 1.44892237422580 1.55765417728057 1.07350978304710 1.03891231787023 0.913982907580528 1.08607067440739 1.21231427555063 0.88578646907823 0.74757763585772 1.38568103199976 1.33080984459981 0.19640244110575 0.201647725619146 0.203952987902618 0.199615419333368 0.205315073034725 0.202496384653710 0.196833224454779 0.196895464030998 0.208866860593620 0.206759446030834 0.208429624047853 0.214258590275757 0.199893556244621 0.196794746345412 0.197241874390099 0.196439354994886 0.204333812809375 0.201013609737846 0.199300294967166 1 1 + 4691947 4692658 4692322.273 4690694 4692838 + gene protein_coding_gene FALSE TRUE AT1G13680.1 phospholipase C similar to phospholipase C [Arabidopsis thaliana] (TAIR:AT4G36945.1); similar to MAP3K-like protein kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96605.1); similar to Os03g0415200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050364.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909) -0.2551514888972 -2.23671579793784 0.0472218643647853 1 1.44248061729607 2.26249879789884 -0.2551514888972 0.132427971885634
AT1G28240_at 7.54243242198408 7.3294264428449 7.22197404309799 7.39416978398928 7.63438763013625 7.20760171157114 7.17494658132343 7.42667299376078 7.33415878035604 7.74738706043854 8.48332891616574 7.94397079368678 8.09083894496868 8.11741783271975 8.08790485496172 8.07362537619708 7.96494815514228 7.64076778319178 7.70975058309791 0.181767863700174 0.1796917174401 0.185451036783266 0.179260464033316 0.195033918568639 0.192384490965971 0.185379458873993 0.187896399476939 0.207187301498074 0.187595093299373 0.184550451667654 0.177796603686808 0.186118581415649 0.189105036975401 0.187337191834731 0.185332250153684 0.185058950744881 0.190913667439466 0.18366839433983 1 1|0 -|/ 9868533 9869185 9868772.222 9868303 9872198 - gene protein_coding_gene FALSE TRUE AT1G28240.1 similar to hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Arabidopsis thaliana] (TAIR:AT1G53040.2); similar to Os01g0304300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042838.1); similar to Os05g0531500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056134.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47075.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) 0.224707603192714 2.23648807750419 0.0472406361312583 1 1.44213862090493 15.1901760211352 0.224707603192714 0.0979763505736297
AT2G06040_at 2.1812345083497 1.99986161368685 2.72073513680058 2.47461822042866 2.3738418818225 2.31350629969633 1.9533586986972 2.10435842941706 1.67463382285648 1.71852069196208 1.51321486845472 1.830492848397 1.75597560650579 1.50079951358522 1.8281051870617 1.77721986106049 1.81812081462126 2.01242539053625 1.91188259230599 0.162801731252486 0.162063217147057 0.158506544433774 0.164463022102768 0.15957644209359 0.16028007156745 0.161028904102627 0.15748320924128 0.164473626482028 0.161322720973753 0.157789029287101 0.158789725044696 0.160468610431258 0.168750705650809 0.162251989650308 0.158935467929223 0.165506838121782 0.161391882036019 0.159569068167707 2 2|0 -|/ 2352331 2354551 2353749.333 2352158 2355556 - gene protein_coding_gene FALSE TRUE AT2G06040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21900.1); similar to DNA dependent ATPase [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_567979.1); similar to Os08g0459100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061972.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.198585315526134 2.23621199912737 0.0472634037995872 1 1.44172401359063 4.02663433043869 0.198585315526134 0.0599256503926667
AT1G10990_at 2.49560306469595 2.66233200880895 3.38117306226502 2.94170234223333 3.10043389727186 2.89584688539928 2.65262815271533 2.00528274739459 3.04487819094146 2.55317841748984 2.71800511834812 3.19320334547138 3.16411348149673 2.54962319913905 2.91299825918588 2.70280275626073 2.58882842020204 2.49880550475007 3.06094778132091 0.191395754658628 0.188620841983090 0.188891076085501 0.197760883522497 0.185806202085296 0.193779658696129 0.191308317181681 0.182378302272363 0.185082631136585 0.186231744749553 0.190125586678754 0.186194212399216 0.185426629583405 0.185410919868172 0.181856813899972 0.181856813899972 0.184231334433533 0.194750279267339 0.184627350742722 1 1|0 -|/ 3670585 3671023 3670773.4 3670278 3671187 - gene protein_coding_gene FALSE TRUE AT1G10990.1|AT1G10990.2 unknown protein 0.265270133705672 2.23615048682475 0.0472684780369768 1 1.44163163814924 5.60556642369345 0.265270133705672 0.142897993178909
AT1G33055_at 2.38846920313119 2.57438840551627 2.48833882841483 2.34820629381006 2.58977768253302 2.85279748130016 2.39761874503733 2.80344497635877 2.83862359054703 2.42124738920862 1.73585613486996 2.15916713203308 2.21949584222949 2.14306056214583 2.14631261997025 2.07248439458053 2.50743176544201 2.28725570660033 2.62692007317988 0.234170304268343 0.231117187208930 0.239691473107760 0.243893007997786 0.231094135739707 0.243154218196634 0.231391966122322 0.233205266744840 0.231200941509254 0.231462435184988 0.234416030738135 0.234419126135531 0.238818450649168 0.232444724833276 0.230820505330852 0.230820505330852 0.235025663915748 0.232336140270586 0.236218681529684 1 1 - 11972383 11972492 11972430.727 11972220 11972570 - gene protein_coding_gene FALSE TRUE AT1G33055.1 unknown protein -0.220623796120473 -2.23576909921989 0.0472999509009386 1 1.44105891075173 4.94928688736893 -0.220623796120473 0.0928833602799377
AT1G34770_at 1.78676343564569 1.62320405254763 2.18080328978433 2.39949831439855 2.13052212839736 1.94356093644704 1.80437456655692 1.614812740536 1.53267865671778 1.75015313062583 1.13036944197008 1.86914401764455 1.52496151722173 1.52255471980241 1.55422736146906 1.94264089015049 1.7661292580735 1.89617042202027 1.82609307558655 0.208859064840552 0.207496279943236 0.207701585153712 0.211646545598995 0.200632940612716 0.204852269722088 0.201384232509366 0.203819519078484 0.206940839512393 0.207736887869383 0.215726549740550 0.207895948596329 0.205006986422424 0.214060601936816 0.204545074323424 0.200632940612716 0.207174560526247 0.208267805763995 0.202560939802855 1 1|0 +|/ 12746860 12748244 12747289.556 12746464 12748592 + gene protein_coding_gene FALSE TRUE AT1G34770.1|AT1G34770.2 MAGE-8 antigen-related similar to Os07g0151300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058903.1); similar to MAGE-8 antigen-related (ISS) [Ostreococcus tauri] (GB:CAL54252.1); contains InterPro domain MAGE protein; (InterPro:IPR002190) 0.202053608834608 2.23573519160682 0.0473027499966985 1 1.44100799334671 3.61231726196622 0.202053608834608 0.0660033661124419
AT1G11530_at 9.58986466345405 9.93810166098192 9.87894212354115 9.91470158734409 10.5191965222155 10.0323304235946 9.48804302874924 9.42935776452364 9.07066064488559 9.11906709328346 9.18549897311913 8.64269325735798 9.48279282528017 9.3364945180721 8.73284370992856 9.37183780877512 9.36406395230501 9.03285262999367 9.28773988618084 0.14390598929604 0.138028482088252 0.142783047024910 0.136983885623410 0.146311147951583 0.147754993456319 0.143118198835142 0.135207863393892 0.151587217558394 0.140221721644930 0.141362486157401 0.141267956034484 0.140351791438970 0.141120940784352 0.135576509987008 0.137274165038169 0.145699164655219 0.139772234948490 0.140412893179908 1 0|1 /|+ 3874875 3875280 3875073.3 3874437 3875484 + gene protein_coding_gene FALSE TRUE AT1G11530.1 ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); thiol-disulfide exchange intermediate Encodes a single cysteine active site thioredoxin-related protein, similar to thioredoxin H-type from Arabidopsis thaliana SP:P29448, Nicotiana tabacum SP:Q07090; contains Pfam profile: PF00085 Thioredoxin; Identical to Thioredoxin-like 4 [Arabidopsis Thaliana] (GB:Q8LDI5;GB:Q9SYX9;GB:Q9XH49); similar to ATTRX1 (Arabidopsis thaliana thioredoxin H-type 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G51030.1); similar to thioredoxin h [Hevea brasiliensis] (GB:AAD33596.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.229714859658651 2.23511971010595 0.047353586004368 1 1.44008379595706 19.0002125138692 0.229714859658651 0.104268889364665
AT1G20350_at 3.1248381004643 3.50563852301472 3.49825350075059 3.63270959166538 4.03512101338946 3.72504093386456 2.08503777108126 2.17564118817953 3.53350718722938 2.76376034093761 2.43616415954179 1.83652558580129 2.27780266133598 2.40580363207060 1.88455165996007 2.58392235658052 2.6213927979314 2.93865523862381 2.51444807141584 0.222037297534438 0.213920457002005 0.216477721704239 0.219440353896596 0.225485257552814 0.233630245145439 0.216278591775697 0.217724030585133 0.218434035996179 0.215810508074928 0.213586560045842 0.213586560045842 0.218126611825480 0.213981680106906 0.213586560045842 0.213987599635090 0.216837124512030 0.217637561124705 0.217732683167534 1 1 + 7043812 7044248 7044016 7043703 7044582 + gene protein_coding_gene FALSE TRUE AT1G20350.1 ATTIM17-1 (Arabidopsis thaliana translocase inner membrane subunit 17-1); protein translocase mitochondrial inner membrane translocase similar to ATTIM17-2 (Arabidopsis thaliana translocase inner membrane subunit 17-2), protein translocase [Arabidopsis thaliana] (TAIR:AT2G37410.2); similar to unknown [Solanum tuberosum] (GB:ABA81866.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 0.217928046259476 2.23466686495483 0.0473910224119185 1 1.43940386053711 5.8779554751387 0.217928046259476 0.089495539733007
AT2G03500_at 3.24369309311826 2.89455215610191 3.1777857598146 3.33169648675719 3.39212326956783 3.21732691669119 3.29028572839336 3.48097020216685 3.19765395626717 2.40306012943439 2.85256967344987 3.14039671867789 3.31260000157530 3.36775245127675 2.93476138936455 3.32394736296069 3.51764254146367 2.86361369406742 2.78362253849688 0.197483937169371 0.193331641950634 0.196914054293103 0.189503377828809 0.189503377828809 0.195312026515720 0.192386421277837 0.189503377828809 0.194691268394791 0.192021896792032 0.197615206932134 0.189772820265612 0.19649087998417 0.195338593753459 0.189503377828809 0.192201211055895 0.194921923599936 0.194165244938811 0.204002069218585 2 2|0 +|/ 1061002 1062115 1061857.5 1059707 1062407 + gene protein_coding_gene FALSE TRUE AT2G03500.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G68670.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67813.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.210869708817156 2.23451678912349 0.0474034353377983 1 1.43917853482786 6.23302387849507 0.210869708817156 0.0797746786493948
AT2G35020_at 6.38308445132484 6.71854492610803 5.76577548084028 5.59403014302445 5.95384094628912 5.4624594122526 3.67539794759752 4.27420962752169 6.59383316959402 5.66968041323977 5.49469575704862 6.42390377309941 4.84825894703354 5.04910573511134 5.9191236806929 4.99867007797557 4.04682932817433 5.28962456255829 6.43388388642108 0.251975555524619 0.24495714276847 0.25356169749996 0.244542592948417 0.243041638197182 0.239678121599106 0.240248829560836 0.238085700450794 0.257809091278963 0.243268258821088 0.237534976302734 0.234951678609902 0.246820534561184 0.248790976821015 0.238805570032265 0.234951678609902 0.248990896656583 0.249843675479225 0.2495274973198 2 2|0 +|/ 14766601 14767512 14767197.2 14763790 14767785 + gene protein_coding_gene FALSE TRUE AT2G35020.1 UTP--glucose-1-phosphate uridylyltransferase family protein Identical to Probable UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) [Arabidopsis Thaliana] (GB:O64765); similar to UDP-N-acetylglucosamine pyrophosphorylase-related [Arabidopsis thaliana] (TAIR:AT1G31070.2); similar to Os08g0206900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061242.1); similar to Os04g0613700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053857.1); similar to hypothetical protein CC1G_06565 [Coprinopsis cinerea okayama7#130] (GB:EAU92554.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618) -0.271236041454804 -2.23441768909245 0.0474116337110434 1 1.43902974735892 11.2240390197682 -0.271236041454804 0.149074457582084
AT2G37120_at 7.40854181688576 7.66902856777113 6.90584412381003 6.85564524420804 7.73006777842242 7.47638285975401 6.67423215809177 6.88847751676702 6.80924538304484 6.74558912912631 7.68179894673699 7.31715829835779 6.86365060218243 7.19836095921879 7.39566898874984 6.9802029416118 7.029414034002 7.01923413236792 7.00798805829397 0.169605941360785 0.165515900291249 0.176185761228811 0.168437788556956 0.166606001833874 0.162221165782858 0.181146099998113 0.176971781595208 0.184515570915841 0.170178032567933 0.169941201417737 0.175173544431603 0.176226649967185 0.165691955403288 0.167725055863615 0.164172720773934 0.162756674696509 0.177163813033814 0.171424220447745 2 0|2 /|- 15601336 15601499 15601428.222 15601109 15602040 - gene protein_coding_gene FALSE TRUE AT2G37120.1 DNA-binding S1FA family protein Identical to DNA-binding protein S1FA2 (S1FA2) [Arabidopsis Thaliana] (GB:Q42337;GB:Q9ZQC9); similar to DNA-binding S1FA family protein [Arabidopsis thaliana] (TAIR:AT3G53370.1); similar to DNA-binding protein S1FA (GB:P42552); contains InterPro domain DNA binding protein S1FA; (InterPro:IPR006779) 0.206663454709053 2.23440488494835 0.047412693074744 1 1.43901052353482 14.2210076597430 0.206663454709053 0.0735493287840196
AT3G57780_at 2.43503517795137 3.04122864576233 1.72158444731283 2.03358832418797 2.58439016462851 2.16500434105986 3.25947343070641 3.31766044728160 2.38009189556457 3.92701550466263 4.12252010424905 4.89739752131996 3.89613722161588 3.84699837777616 3.69472310110226 3.37151975881155 2.75329589675077 4.05015029729801 4.08525368745508 0.257618606856778 0.253688527900342 0.250456030564438 0.258740518753608 0.25886230200627 0.253040584722224 0.250162439809529 0.247644572179473 0.253840316709017 0.264190335669654 0.26001603814764 0.252816971118099 0.247644572179473 0.247644572179473 0.255548897852256 0.248379868316139 0.264685602020292 0.264169115306108 0.252177422259463 3 3 - 21410826 21411475 21411129.444 21410743 21413303 - gene protein_coding_gene FALSE TRUE AT3G57780.1 similar to nucleolar protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G42320.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94664.1); similar to hypothetical protein [Nicotiana tabacum] (GB:BAC53933.1) -0.261117591911720 -2.23439318171269 0.0474136613735245 1 1.43899295261687 6.21635219607447 -0.261117591911720 0.138885088905265
AT3G03860_at 7.97934104158045 8.38814079902886 7.8629511322694 8.3761396259291 8.67387682120125 8.29754407711806 8.63616035615606 8.57848062042142 7.45387779171582 7.9727296936606 8.46831400882801 8.67412980608965 8.33809090928931 8.42242477682904 8.35245084905512 8.52865785559083 8.21063357852045 8.40981497354363 8.04910481846304 0.197300392775235 0.182993945652204 0.195636781954469 0.184602833316629 0.195579281533735 0.200769678867968 0.209513176985263 0.184966308791952 0.218710638581011 0.191936986203034 0.188814378936873 0.182993945652204 0.187343335241028 0.194578769625757 0.195532750853985 0.187554163014463 0.20451049376443 0.191319810643879 0.186205719388160 3 3|0 +|/ 993186 994288 994011.2 992135 994587 + gene protein_coding_gene FALSE TRUE AT3G03860.1 ATAPRL5 (APR-LIKE 5); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. similar to ATAPRL7 (APR-LIKE 7) [Arabidopsis thaliana] (TAIR:AT5G18120.1); similar to Thioredoxin domain 2; Thioredoxin fold [Medicago truncatula] (GB:ABE86406.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.253712184968928 2.23371537127157 0.0474697741948374 1 1.43797535472429 16.4744803238788 0.253712184968928 0.1312745911073
AT3G61790_at 6.92774288770996 7.81569803999004 7.2094686507049 7.25075489809739 8.28786651435825 7.48363874569883 7.10333844027956 7.1293262942623 6.79298618833162 6.35952223295391 7.33690276205972 7.07924944181002 6.89712139500892 7.35515891706997 6.25393225667785 7.1562610047982 5.85079511966206 6.74305240282589 6.28586555520793 0.231198090506475 0.234144416169479 0.238765278380156 0.235439138272488 0.240745684185827 0.253725034188760 0.242180234691479 0.243055138811908 0.244614281169136 0.233115667201237 0.226221436751984 0.228265221278291 0.226221436751984 0.235297723496113 0.236465388906790 0.226221436751984 0.270367492676845 0.242345939866716 0.242678975841738 3 3|0 -|/ 22882952 22883830 22883511.5 22882766 22884761 - gene protein_coding_gene FALSE TRUE AT3G61790.1 seven in absentia (SINA) family protein Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT4G27880.1); similar to Zinc finger, RING-type; Seven in absentia protein [Medicago truncatula] (GB:ABE82758.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.334253478489484 2.23366890395378 0.0474736233413188 1 1.43790559673628 14.0577378862144 0.334253478489484 0.207494387850206
AT4G36580_at 1.99406216968694 2.25578947512123 2.632191195968 2.55606750833957 1.94417104230918 1.64048137113142 2.90709968513356 3.04101163970544 1.55832423328080 2.38488502042814 1.80575517519272 2.20439513207325 2.17798063872831 2.18270484825957 1.78923727407257 2.30847016389856 2.36074091868289 2.1635731526741 2.60291151228833 0.211928528399221 0.211218867289153 0.215367867102892 0.214794053801253 0.207621445060153 0.212001315257345 0.207621445060153 0.210590080721209 0.224969984409763 0.228490612494489 0.228919583431340 0.208513057235717 0.224005918208034 0.216716363928137 0.215994771390852 0.214551946345186 0.224000729885606 0.229714417259514 0.209166999147631 4 0|4 /|+ 17260153 17260637 17260367.1 17257950 17260666 + gene protein_coding_gene FALSE TRUE AT4G36580.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G16930.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT2G18330.1); similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G03060.1); similar to Os02g0697600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047821.1); similar to Os02g0706500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047871.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAL87170.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain CbxX/CfqX; (InterPro:IPR000641); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.207098027679712 -2.23361210914846 0.0474783283772601 1 1.43782033545100 4.5244329700645 -0.207098027679712 0.0743240722194402
AT2G40470_at 0.70922208055371 0.916149617117052 0.685642887245989 0.696905481904706 0.823545332113941 0.290614309687217 0.583293734978319 0.685137266609188 1.18447628961188 1.40248937568243 0.844967102382571 0.82898727975169 0.944497808635835 0.79958101380782 0.871404137982653 0.925838471756371 1.56761100921779 1.13200780676877 1.44171649375124 0.186606976762564 0.186317662879029 0.189838214744140 0.195097133778602 0.182043854149275 0.196275835122321 0.191977974612176 0.189605738969245 0.197790030997177 0.187202292027922 0.186382193355481 0.188690734784321 0.188844653377977 0.180433368549062 0.191182562948544 0.18299422832863 0.191542081113141 0.190400311349583 0.194603941719513 2 2 - 16909659 16910325 16909984 16909382 16910730 - gene protein_coding_gene FALSE TRUE AT2G40470.1 LOB domain protein 15 / lateral organ boundaries domain protein 15 (LBD15) Identical to LOB domain-containing protein 15 (LBD15) [Arabidopsis Thaliana] (GB:Q8L5T5;GB:O22888); similar to LOB domain protein 13 / lateral organ boundaries domain protein 13 (LBD13) [Arabidopsis thaliana] (TAIR:AT2G30340.1); similar to Os01g0825000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044669.1); similar to LOB1 [Triticum aestivum] (GB:AAX21518.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.226402948151924 -2.23300088162949 0.0475289924158946 1 1.43690279289661 1.83994177967782 -0.226402948151924 0.100510862503817
AT1G07380_at 5.10257667063279 5.52231572385466 5.54139952179196 5.71265648488342 6.54128280109808 6.73931324165053 4.83255612552113 4.98603089305148 4.62987129336016 4.6879888735514 3.61660839651630 3.87221205515903 4.31272905954841 4.44423403888634 3.90057677899277 3.84917631057847 4.49942135382859 4.42405536869762 4.78796687559712 0.240267365466909 0.242020228112521 0.242864464670487 0.242411176025582 0.246948679565209 0.245094480966771 0.253683643125907 0.242202792619328 0.246893021239926 0.240267365466909 0.246863447391055 0.247498767692939 0.240267365466909 0.240703070337434 0.244758294067820 0.240267365466909 0.256916154825759 0.240828963450727 0.240267365466909 1 1 - 2264837 2265734 2265224.636 2264827 2268304 - gene protein_coding_gene FALSE TRUE AT1G07380.1 ceramidase family protein similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT2G38010.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823) 0.217863740932017 2.23292942389108 0.0475349188577491 1 1.43679552934019 10.0306759416999 0.217863740932017 0.0896350291982594
AT1G79990_at 6.9477341061414 6.7760565309374 6.33537670922296 6.39459012386954 6.55992078556934 6.34121133870067 6.58152368875865 6.22152755679525 7.30297256599094 6.88659123491611 7.20524700388855 7.23992049537468 6.63886188627494 6.67139129853433 7.10771995951496 6.32466653183614 6.15678620644813 6.7331947038818 6.68022415552332 0.188116260510433 0.190814636945109 0.195326340273061 0.206099276286853 0.187803912767566 0.200088963027259 0.187803912767566 0.202751047501126 0.197234459296467 0.200463024339116 0.195610226574182 0.195760630680587 0.198922861664576 0.191903469952354 0.19979964245622 0.193669480857435 0.220207239390473 0.192888383252003 0.189458204288871 1 1|0 +|/ 30095419 30096486 30095822 30090676 30097131 + gene protein_coding_gene FALSE TRUE AT1G79990.1 coatomer protein complex, subunit beta 2 (beta prime), putative similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT3G15980.3); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); similar to coatomer protein complex, subunit beta 2 [Danio rerio] (GB:NP_001001940.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.210404103037573 -2.23247123794933 0.0475729359436622 1 1.43610778210342 13.3779023530974 -0.210404103037573 0.079381073226038
AT2G18630_at 5.68943029165928 6.07152817824596 5.70322200393236 5.55413660832405 6.41789898258766 5.77859591314939 6.96650452254407 6.9887534405527 6.59320046329605 6.18893858208862 5.9414815054344 6.50953870499194 6.44956901626713 6.4217330483967 5.9715424571119 6.29536971021378 6.31199176002903 6.3398385048588 5.88341896210769 0.229409043757837 0.215734320746222 0.225394390947557 0.227394737181233 0.211659321639468 0.224499768651719 0.217074379420315 0.213911281951445 0.230499913169067 0.221038371108455 0.215090640999364 0.213310628981363 0.232699532017751 0.218278969588351 0.224828850331099 0.220012018790565 0.238779654919894 0.232136306310273 0.224957407704178 2 2 + 8088915 8089366 8089107.818 8087585 8089780 + gene protein_coding_gene FALSE TRUE AT2G18630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66675.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE78510.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) -0.253655156001647 -2.23131407716817 0.0476690788491475 1 1.43437105146226 12.3972516214130 -0.253655156001647 0.131502037860772
AT1G48510_at 1.17793147620291 0.809572801181868 1.18407744021504 0.976309568071207 0.892211412708649 1.24411750263089 0.8967185304755 0.724629478563858 0.551164899279729 1.30200666345439 1.22114312318117 0.898594540068929 1.22670377048129 1.13621966216309 0.760120967356538 1.14572387858692 1.54587933192068 1.50071047935039 0.847385940464369 0.221855340742414 0.221841741997677 0.218899528096748 0.218713141433828 0.220562778056337 0.228826715437446 0.226578820381349 0.224374480596615 0.222491696961936 0.226511871448551 0.224810240723282 0.226451004243653 0.224154975774364 0.220478012331433 0.222540123528635 0.218713141433828 0.235624691869433 0.224250968229434 0.220004184828568 1 1 + 17939150 17939836 17939520.9 17938557 17940583 + gene protein_coding_gene FALSE TRUE AT1G48510.1 cytochrome c oxidase assembly protein surfeit-related similar to SURF1 (SURFEIT 1) [Arabidopsis thaliana] (TAIR:AT3G17910.1); similar to Os03g0200700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049291.1); contains InterPro domain Surfeit locus 1; (InterPro:IPR002994) 0.225583522019772 2.23093023211281 0.04770101178084 1 1.43379501689854 2.0279824280253 0.225583522019772 0.0997593929737478
AT1G28380_at 9.58955272774755 9.5251701227253 9.8599373858653 9.73945332068844 9.8833458908708 9.77801238520203 9.18790677408633 9.15507214293604 9.53980975160011 8.9682445277148 8.90901860935156 9.09612715483447 9.09383940195379 9.14136324345696 8.03531396377943 9.18898428693963 9.37324546975873 9.09401455497613 8.70681450473054 0.105962561415091 0.105231371736187 0.106267617225401 0.106522341491574 0.109646846722895 0.107609178186137 0.109709457944119 0.105646706678205 0.116159518725385 0.115690462674125 0.114474146044424 0.108656410299799 0.106905779072292 0.106877126414365 0.119394812064048 0.107946008232288 0.111796437675281 0.109865332898105 0.117227528334393 1 1 + 9965461 9966008 9965670.273 9963579 9966306 + gene protein_coding_gene FALSE TRUE AT1G28380.1 NSL1 (NECROTIC SPOTTED LESIONS 1) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24290.2); similar to Os05g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056288.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79564.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862) 0.185313605699512 2.23001551682066 0.0477771916306838 1 1.43242243088709 18.6213619755885 0.185313605699512 0.0303881181985720
AT2G29410_at 2.12012295409896 2.65066864573936 2.19919579327906 2.28704288244103 2.51906075150714 2.32164317894213 2.56295155687227 2.98202542875316 2.00505567402283 2.57994951631514 2.0635625765446 2.20484497912593 2.02176850508442 2.02363227549201 1.90423637483562 2.42850318248847 2.28214664375841 2.29568965135433 2.60507719084436 0.196084225894093 0.196645254923084 0.205220137818490 0.197818482715017 0.205066474297105 0.204219539486176 0.204456623255378 0.202116189757531 0.199722869233663 0.194885756203457 0.194885756203457 0.196558669099058 0.201779944853453 0.196628619466063 0.198502055707914 0.200512787140937 0.197392563173667 0.197009667875426 0.204946210596747 2 2 + 12624595 12624976 12624771.364 12623641 12625064 + gene protein_coding_gene FALSE TRUE AT2G29410.1 MTPB1; efflux permease/ zinc ion transporter member of Zinc transporter (ZAT) family Identical to Metal tolerance protein B (AtMTPb) (AtMTP4) (MTPB) [Arabidopsis Thaliana] (GB:Q6DBM8;GB:Q9ZW23); similar to ATMTP1/MTP1/ZAT1 (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA), zinc ion transporter [Arabidopsis thaliana] (TAIR:AT2G46800.2); similar to cation-efflux transporter [Brassica juncea] (GB:AAO64482.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.245426299149452 -2.23000507529589 0.047778061900264 1 1.43240676374547 4.73020997427726 -0.245426299149452 0.122831324633367
AT1G74680_at 7.36992761932797 8.14975942048433 7.67064941911105 8.00704167470269 8.56352213979648 8.04919896503718 7.51526806320855 7.21420105057601 7.0839737052859 6.67464117983232 6.77247519244806 7.23858729233576 7.22129653063184 6.91195176491715 6.56869179448995 7.05077987678987 7.36731445847261 7.37278883809387 7.14582561541034 0.219007365185735 0.208763715895699 0.219611340381560 0.208919713803006 0.213452542011107 0.215859455304792 0.207930369225021 0.209729917175925 0.222195489269151 0.222984983578617 0.208264881512335 0.214657953672054 0.209920080449537 0.207492912836630 0.215089711504726 0.206198443964433 0.209673007130330 0.209904066701023 0.213788174665787 1 1 + 28063999 28064553 28064350.727 28062849 28064780 + gene protein_coding_gene FALSE TRUE AT1G74680.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT3G45400.1); similar to secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] (GB:AAX33321.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.302576448137751 2.22959020592905 0.0478126523011863 1 1.43178428513675 14.8330123200465 0.302576448137751 0.179549285335241
AT4G27150_at 1.5845148372589 1.27765320771375 1.54455497109618 1.81227276187020 1.35910862408694 1.50643052289424 1.25998255008414 1.14974739125151 1.67657643752858 1.37874775475307 1.59851837849073 1.44462353106274 2.1189131781808 1.43481509562893 1.93006824841639 1.55105532187563 1.70856603668592 1.75340891820452 1.48316454763012 0.169229100214238 0.181589023440944 0.168581722453747 0.168890485020081 0.168581722453747 0.169702471504487 0.172558600499549 0.174339267436958 0.174686293211085 0.173869438388397 0.174613931228189 0.168581722453747 0.180855766540605 0.168669659024886 0.169215730881965 0.171228548479864 0.171595003516864 0.171955310381155 0.179520370624663 4 4 + 13609469 13609816 13609594.364 13609347 13610081 + gene protein_coding_gene FALSE TRUE AT4G27150.1 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 Identical to 2S seed storage protein 2 precursor (2S albumin storage protein) (NWMU2-2S albumin 2) [Contains: 2S seed storage protein 2 small subunit; 2S seed storage protein 2 large subunit] (AT2S2) [Arabidopsis Thaliana] (GB:P15458); similar to 2S seed storage protein 3 / 2S albumin storage protein / NWMU2-2S albumin 3 [Arabidopsis thaliana] (TAIR:AT4G27160.1); similar to Napin-B precursor (1.7S seed storage protein) [Contains: Napin-B small chain; Napin-B large chain] (GB:P27740); contains InterPro domain Napin/ Bra allergen; (InterPro:IPR000617); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.208641866003716 2.22862531916439 0.0478931940893407 1 1.43033668736053 3.03944594255138 0.208641866003716 0.0773328621779825
AT2G45550_at 1.98630331343809 1.74726911459995 1.76297639466035 2.04370504237904 1.93493898599102 1.59296576403490 2.08100173973509 2.31315531466132 2.09450665905334 2.5268506739615 1.95072772055783 1.77489824044215 2.38197889954046 2.07511072556931 2.29776414199998 1.84703819173008 2.04085816848273 2.62181558428072 2.48844457343788 0.197778694860539 0.191417948296657 0.190567672469617 0.193603661806876 0.192696909408103 0.193004655094267 0.189157394572831 0.193946812162851 0.193981493334287 0.194988069934994 0.205123039232472 0.191200829990878 0.190398760409571 0.197208464364143 0.192415583497933 0.198351570188377 0.193927399898085 0.201671628576953 0.19160707231887 2 2 - 18780639 18781190 18780862.545 18780615 18782728 - gene protein_coding_gene FALSE TRUE AT2G45550.1 CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4); oxygen binding member of CYP76C Identical to Cytochrome P450 76C4 (EC 1.14.-.-) (CYP76C4) [Arabidopsis Thaliana] (GB:O64635); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45570.1); similar to CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT2G45560.1); similar to CYP76C6 (cytochrome P450, family 76, subfamily C, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G33720.1); similar to putative ripening-related P-450 enzyme [Vitis vinifera] (GB:CAB85635.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.222222916792228 -2.22852813197286 0.0479013137756615 1 1.43019089035255 4.17964342263396 -0.222222916792228 0.0958521161932174
AT3G52730_at 10.43565130138 10.6211402328581 10.6689334242976 10.6737811369186 10.4671119162935 10.3059420562842 10.3540249373176 10.6416026246046 10.1765196520987 10.4206068283461 10.9140672661712 10.9951183375430 10.7464215224654 10.5571952826742 10.8237622700746 10.8273831991454 10.4035775885130 10.4449079470788 10.3861819771165 0.087236246249391 0.087236246249391 0.0910143767246483 0.0889188040995424 0.0875721933579212 0.0900841995699455 0.0883678033407505 0.0936770080687698 0.0997788812010607 0.090515987808566 0.089290013377694 0.087236246249391 0.0908913397475118 0.0989953397176364 0.0907260510203894 0.0873095002091434 0.0939165587798184 0.0879955489967984 0.0909536835287891 3 3|0 -|/ 19554129 19555119 19554777.889 19553909 19555242 - gene protein_coding_gene FALSE TRUE AT3G52730.1 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein similar to Ubiquinol-cytochrome C reductase, UQCRXQCR9 like [Medicago truncatula] (GB:ABE77853.1); contains InterPro domain Ubiquinol-cytochrome C reductase, UQCRXQCR9 like; (InterPro:IPR008027) 0.201061025131407 2.22830080082699 0.0479203117325584 1 1.42984986337081 21.0419352850253 0.201061025131407 0.0654655280874192
AT3G12540_at 0.972680858751044 0.860056361127057 1.22776160469726 0.728181023219406 1.02481218979066 0.82987638561596 1.34804031683616 1.24802821942568 1.37954716290770 1.49489174681611 0.832883941853409 0.978148549320176 1.44965518517402 0.81732909181805 0.737610687905336 1.01538268736557 1.07675465736186 1.34161136637451 1.09112480840812 0.197479197823767 0.192571941943531 0.192571941943531 0.19602635542341 0.192571941943531 0.196633388153800 0.194692003438007 0.196680232470259 0.196828508473463 0.196349862081275 0.192571941943531 0.193339674192822 0.198220830592436 0.195704220568272 0.196471563712392 0.193684128703414 0.197930887278678 0.195251095459005 0.197229279551809 3 3 + 3976330 3977058 3976715.364 3975253 3977319 + gene protein_coding_gene FALSE TRUE AT3G12540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39690.1); similar to At3g12540-like protein [Boechera stricta] (GB:ABB89771.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869); contains InterPro domain t-snare; (InterPro:IPR010989) -0.222613095009097 -2.22815199282881 0.0479327514549766 1 1.42962663739151 2.20644291673654 -0.222613095009097 0.0963943095073562
AT3G16440_at 1.51795986900355 1.55913859659579 1.52996243224738 1.73703497889028 1.44428654611348 1.46704959597057 2.08734510367080 1.76031321395586 1.82646912113658 1.81821505966251 1.99324837187291 1.79282609980404 1.88557975892932 1.73764613222787 1.74979201638456 1.65308693064453 1.76601504455991 1.78015548083855 2.39339908741915 0.190164356739050 0.195028185218622 0.199458433874384 0.191116537970152 0.188555763085558 0.189239903053930 0.19645113010929 0.194495996799568 0.193640709942407 0.192158493518663 0.189842400099589 0.194612999610713 0.186400858137743 0.195416760338345 0.193081420184006 0.189139819731088 0.193548703986457 0.189434905902619 0.197784984765176 3 3 + 5586735 5587512 5587035.364 5585950 5587754 + gene protein_coding_gene FALSE TRUE AT3G16440.1 ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B) myrosinase-binding protein-like protein (AtMLP-300B) mRNA, Identical to Myrosinase-binding protein-like At3g16440 [Arabidopsis Thaliana] (GB:O04312); similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT3G16450.3); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.202253250416386 -2.22809221822319 0.0479377492311640 1 1.42953697116511 3.54163036812952 -0.202253250416386 0.0674786138159614
AT4G30150_at 3.607698472806 3.53874570655221 3.61679115992554 2.99261969474574 3.43555385643478 3.50718261069607 3.89313928200962 3.6072352545251 3.00066569100413 3.355057331309 3.21952934621860 3.02480359032440 3.23747655410535 2.78412031607571 2.91329364699323 3.02769774786195 3.56901207876724 3.22742960275257 3.65515117857211 0.251991006642068 0.249671456211395 0.251506779860142 0.244355008378528 0.245958927612558 0.249805144774498 0.248857233121884 0.252090022069468 0.244441976229635 0.250612920357512 0.244355008378528 0.250090239318751 0.245355643227016 0.251136020621899 0.252775221966273 0.247060777663479 0.244355008378528 0.244355008378528 0.245490480728243 4 4 + 14748508 14749520 14748868.4 14742458 14749993 + gene protein_coding_gene FALSE TRUE AT4G30150.1 similar to Os03g0203100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049305.1) -0.242602777548535 -2.22732033336425 0.048002331653464 1 1.42837915500990 6.75605996838645 -0.242602777548535 0.120047596602433
AT4G03010_at 2.02611696290572 1.59428726118533 1.13242170806166 1.19240048877942 1.64322830773082 1.47226976877332 1.43772413514990 1.48531536402954 1.66900076059390 1.64420001913916 1.40119770588157 1.92716152757683 1.45262501580985 1.34594694902328 1.68516283658298 1.08170144543048 1.42565216155368 1.70450482632256 1.63620800966869 0.202525899816544 0.216599792710523 0.205287614313633 0.202212289032285 0.207740563633278 0.199819769902304 0.201981036815696 0.205451064507087 0.216749294375746 0.199819769902304 0.201366058220225 0.201707031389426 0.214766321571614 0.206366742893288 0.203077715457974 0.199819769902304 0.211094406387875 0.207956174081673 0.203932764707141 4 4 + 1330564 1331105 1330888.818 1329952 1331139 + gene protein_coding_gene FALSE TRUE AT4G03010.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G03440.1); similar to putative leucine-rich repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59431.1); similar to Os05g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055516.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.211294866879623 -2.22658258171133 0.0480641360808068 1 1.42727265433118 3.07436899373858 -0.211294866879623 0.0814582277940006
AT2G18990_at 3.9405807224497 4.54288940165047 3.59712505608664 3.89228750110076 4.43681223441044 3.99946578987229 4.52738196947837 4.6946864870897 3.87530695787179 4.12127118588506 5.1436655033205 5.5453063617633 4.17763032459698 5.06881321611434 6.1436243266108 4.83245700629181 4.29382041937171 4.85968789818749 4.11603760990953 0.256867975809563 0.253207445058870 0.253097199598455 0.248679678316734 0.255350010192385 0.261587762061735 0.254315080804885 0.250365739061686 0.257956737561941 0.249312499659356 0.251477097500553 0.252774016361040 0.247914621340744 0.250429633476447 0.250444973745235 0.249115463156104 0.248303801421428 0.249107354592722 0.255253091306709 2 2 - 8245998 8246822 8246495.364 8245773 8247084 - gene protein_coding_gene FALSE TRUE AT2G18990.1 TXND9 (THIOREDOXIN DOMAIN-CONTAINING PROTEIN 9 HOMOLOG) Identical to Thioredoxin domain-containing protein 9 homolog [Arabidopsis Thaliana] (GB:O64628); similar to thioredoxin-related [Arabidopsis thaliana] (TAIR:AT3G25580.1); similar to PREDICTED: similar to ATP binding protein isoform 1 [Gallus gallus] (GB:XP_001232595.1); similar to Os08g0250700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061375.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.262812523838568 2.22650913101778 0.0480702935109077 1 1.42716249713524 8.72673575356108 0.262812523838568 0.141562451929095
AT2G17500_at 2.08671879316730 2.22319489083877 3.58468216644955 3.51725882483677 1.87812200514248 2.47776832959518 2.06823727325552 1.94869370526112 0.619671403073823 1.07710848248095 0.382778185631693 0.564410532483382 0.708215892836224 1.23902523078561 0.499602625732152 1.42404544482992 0.78330474451643 0.0877221108635242 1.38780472790736 0.237105924478326 0.234128309412873 0.257992048423942 0.248016067730547 0.240032978063659 0.238110793972551 0.23491667681726 0.235861596403676 0.239702545835659 0.240136846884972 0.235655563942461 0.234217167669260 0.232355381029648 0.232355381029648 0.239662950260988 0.235306438685203 0.237643097404190 0.246947075787467 0.241891853068676 2 2|0 +|/ 7615154 7616048 7615681 7613839 7616360 + gene protein_coding_gene FALSE TRUE AT2G17500.1|AT2G17500.2|AT2G17500.3|AT2G17500.4 auxin efflux carrier family protein|auxin:hydrogen symporter similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT5G65980.1); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE78071.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.232844945340570 2.22646063790766 0.0480743591409284 1 1.427089770529 3.34275098212529 0.232844945340570 0.109043391712478
AT2G03150_at 7.02542419596997 7.35496461227896 7.05900529242967 7.02554033852123 7.11433720006233 6.74720838292022 7.02266958942586 6.92507005518158 6.98420965543443 7.27288491861722 7.16864670986744 7.18319563250661 6.66820048960108 6.93497063626957 6.61770352357786 7.07576309795552 6.64426947617639 6.55860202677183 7.31799640885813 0.192576095085598 0.193675863632381 0.199228273342788 0.192639900461812 0.200365160872058 0.205410548042039 0.196681211400509 0.193035521578893 0.21173040049556 0.189361725055764 0.189593712429749 0.194383047464825 0.194425031768876 0.204182460905529 0.206490717140571 0.200502274274419 0.204567406454853 0.193881655586957 0.198598952558337 2 2|0 +|/ 958104 958917 958515.75 951930 959162 + gene protein_coding_gene FALSE TRUE AT2G03150.1 EMB1579 (EMBRYO DEFECTIVE 1579); binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to calmodulin-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53749.1); similar to Os06g0562700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057877.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.215393677471599 -2.22603723645729 0.048109870828230 1 1.42645480324791 14.0583354300458 -0.215393677471599 0.0872212719194356
AT1G05330_at 1.71485608133233 2.04246958318905 1.99638219912826 2.47057393836127 1.09309979381237 1.53009151704408 1.60338029238347 1.90103099675984 2.13202197952631 2.25530237419761 1.32517235083909 1.89790964703501 1.81108424457183 1.86362321951169 1.69572594120232 1.44338116700230 1.55243746811620 2.1941286884605 2.19258257868306 0.228229341235923 0.228486895387052 0.234746209643662 0.238662863114578 0.242661607170277 0.244360791845425 0.239148048124846 0.234077973463030 0.236024841983845 0.231387041336353 0.236633064209123 0.236301891044146 0.230867088949998 0.228229341235923 0.24429499279707 0.232927322183512 0.241467313083358 0.228229341235923 0.23621190734357 1 1 + 1558204 1558551 1558378.636 1558169 1558582 + gene protein_coding_gene FALSE TRUE AT1G05330.1 unknown protein -0.256633423144819 -2.22522010530188 0.0481784765963277 1 1.42522947283614 3.75210312607368 -0.256633423144819 0.135353322187679
AT1G11290_at 3.46666648562411 3.12647047606162 3.13283659047730 3.35718505396099 3.07807649716990 3.30948165136046 3.48297854787681 3.40308830171089 3.23299594544584 3.6432216670926 3.17411981025955 3.49045414598775 3.06217054339337 3.01177762019057 2.96567621353019 3.22037764729627 3.60904711019826 3.20915510632741 3.59622544363868 0.189654814958917 0.192192077202975 0.186729332653793 0.191308639029557 0.186721376103642 0.195962608497926 0.195273224478108 0.191022692550841 0.191195333816623 0.195502139995656 0.195752135453441 0.186721376103642 0.189409009570142 0.188765753739532 0.19761927601112 0.190227880711628 0.189479112712091 0.188749202275374 0.18866043729434 1 1 - 3791458 3792026 3791728.364 3791454 3793883 - gene protein_coding_gene FALSE TRUE AT1G11290.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to Os06g0112000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056590.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.211686540993655 -2.22469358458287 0.0482227325317794 1 1.42444000184231 6.64892876388374 -0.211686540993655 0.082268584531185
AT2G41770_at 6.25989739690773 6.71157166687731 5.688380803361 5.82773399679981 5.77138863217906 6.05796038895599 7.32426452373417 7.84188902124063 6.54345504573798 6.36111268307956 7.52260080925773 8.06438088392964 7.36115787495115 7.28742354829776 6.76427680195209 6.99934860430128 6.8826100228509 6.7989833352233 6.6464205522681 0.228978340175474 0.228978340175474 0.235626778944458 0.234835621684186 0.245631461902448 0.246876420335227 0.234976784587174 0.228978340175474 0.249391378505658 0.237844167011262 0.235888608314834 0.228978340175474 0.239591237971500 0.264054608417994 0.240342229905841 0.231056850345733 0.237278389613026 0.231514506187145 0.228978340175474 2 2 - 17431630 17432056 17431819.091 17431436 17434360 - gene protein_coding_gene FALSE TRUE AT2G41770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57420.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16125.1); similar to Os07g0656400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060503.1) -0.252469027732865 -2.22461786625291 0.0482291001267484 1 1.42432647371685 13.2989327181523 -0.252469027732865 0.131052487149953
AT2G37460_at 9.31178863374713 9.43264157663516 10.3401924036265 10.3567292221635 10.1582799838620 10.0955868570039 10.7350191171062 10.6334246844432 9.79505942970568 10.0388068669423 10.140066750988 9.75044545268512 10.2216008632565 9.98090736248378 9.43104295001711 10.2363240965348 10.4691651346896 9.90298329005618 9.73663142275413 0.0875714746131478 0.0875672315720162 0.0888450281736532 0.0861772294314261 0.0871012228431615 0.0932387707310613 0.084265569720055 0.0841875679827456 0.103764318501799 0.0848949681612488 0.0873890936002216 0.0879545326185152 0.0893449860014966 0.0901754458807928 0.0923455094560086 0.0880983357313031 0.0854932994432955 0.0936598789393595 0.0854514696489686 2 2|0 -|/ 15734060 15734551 15734274.333 15733527 15736176 - gene protein_coding_gene FALSE TRUE AT2G37460.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G37450.2); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE82104.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.184606514067950 2.22453023850710 0.0482364702587726 1 1.42419509073266 20.0696575901849 0.184606514067950 0.0295365110554762
AT1G43790_at 4.09707381159311 4.72172261254147 3.47551078670957 3.61860246221269 3.68722168869364 3.76540380229703 4.16857221610788 4.08607385800949 5.54205993831933 4.03416685026571 5.55267675684747 6.65523143086083 5.44443745692171 6.03043897619657 6.6746665796082 5.50557166915756 5.16902335599145 6.29470548327511 4.86204327743758 0.2314285537085 0.2314285537085 0.235598390765963 0.241444722268628 0.239344736372358 0.237829519466809 0.231715196666803 0.233008579623449 0.242818901204658 0.2314285537085 0.237394892192023 0.2314285537085 0.232798995940900 0.235240399412067 0.239604372012644 0.236710305734799 0.24290494079076 0.233798976229663 0.231884552006684 1 1 + 16578393 16578712 16578519.091 16578335 16578857 + gene protein_coding_gene FALSE TRUE AT1G43790.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G48920.1) 0.235705667674202 2.22429799483533 0.0482560088609567 1 1.42384688841311 9.3168229809114 0.235705667674202 0.112629178175375
AT4G38690_at 8.27671957792476 8.42847755606573 8.41627401192197 8.55610976046635 9.17663621209755 9.25065776087715 9.35281507223129 9.44960403213386 9.38256643804857 8.76803843671426 9.94041397843673 9.25168748092196 9.77791679781423 9.57515874732861 9.29441329130595 9.21798517321638 8.91333537958769 9.57786016440474 8.96707181916005 0.113432287211958 0.113305273976226 0.116192193028847 0.115914962292803 0.107840648406977 0.109391370453157 0.116378107606839 0.11253686210875 0.112528320676693 0.116733907617078 0.112203133464213 0.107570149425298 0.112443126086514 0.113321024186360 0.113733064373193 0.115050560195836 0.112056768513351 0.113382517717587 0.121069968872150 4 4 - 18074750 18075295 18075072.818 18074469 18075759 - gene protein_coding_gene FALSE TRUE AT4G38690.1 1-phosphatidylinositol phosphodiesterase-related similar to 1-phosphatidylinositol phosphodiesterase-related [Arabidopsis thaliana] (TAIR:AT4G34920.1); similar to Ki1 protein [Beta vulgaris] (GB:AAO92349.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909) 0.188693094368964 2.22402136876407 0.048279291231615 1 1.42343215843938 18.1048227185988 0.188693094368964 0.0414724384144142
AT1G60930_at 1.64018249809168 1.81428671998501 1.68176026454894 1.52461404670596 1.26362376661292 1.65679932061627 1.97184595277361 1.65162710537506 2.17736963683345 2.05098761943943 2.10644948940807 1.85235357840534 1.75989170903855 1.88210805715381 1.95227703351585 1.40174464908560 1.67406879505458 2.09860780034123 1.9152619419014 0.235920972826954 0.235674317018026 0.237501611332718 0.247605308636484 0.239622075147261 0.23803063131402 0.247840122166732 0.240459870266081 0.238059231851490 0.246105636190209 0.235266888888270 0.243214010616986 0.244797921978699 0.240787300599507 0.235266888888270 0.242022504555519 0.246754610726688 0.236944002657441 0.235266888888270 1 1|0 -|/ 22435079 22436352 22435893 22435025 22441637 - gene protein_coding_gene FALSE TRUE AT1G60930.1 RECQL4B (Arabidopsis RecQ helicase l4B); DNA helicase similar to ATSGS1/RECQL4A, ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G10930.1); similar to OSJNBa0088K19.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE03209.2); similar to ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE87713.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain HRDC; (InterPro:IPR002121); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent DNA helicase RecQ; (InterPro:IPR004589) -0.222360823246515 -2.22333918231605 0.0483367537672139 1 1.42240946313804 3.59499781186791 -0.222360823246515 0.0966838829064209
AT3G53080_at 0.745683835277278 1.06638081929135 0.86921326117479 1.19842188551481 0.83519544305139 0.874664483027369 1.38962981442574 1.01598082053072 1.13960674338472 1.88925808160603 0.842548418991605 1.00715649981700 0.769216982367011 1.27867073509335 1.12568498709280 1.13421844177963 1.10699873348576 1.63211848649932 1.34056596529361 0.234868627989158 0.233888690319472 0.232004482473892 0.237404537909181 0.231333155348455 0.225773748999824 0.225773748999824 0.231889338268157 0.232417781626133 0.22883750599675 0.230427524755124 0.231895947936306 0.237163668445554 0.225812965384632 0.232711680843903 0.229180278167461 0.232999638916734 0.228194533410682 0.225773748999824 3 3 + 19689007 19689523 19689241 19688971 19689719 + gene protein_coding_gene FALSE TRUE AT3G53080.1 galactose-binding lectin family protein similar to galactose-binding lectin family protein [Arabidopsis thaliana] (TAIR:AT3G53050.1); similar to D-galactoside/L-rhamnose binding SUEL lectin; Integrase, catalytic re (GB:ABE79888.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -0.227222661821582 -2.22322552303369 0.0483463339782769 1 1.42223908107327 2.28367309065448 -0.227222661821582 0.102730392378267
AT4G26630_at 9.62328174976658 9.54533786122457 10.1370278306533 10.0181132774093 10.0801086218153 9.87003190547379 10.0824518515792 9.84305054838926 10.0311294284310 10.0474916624558 10.0241573696016 10.1820900504825 9.99353319690012 10.1568477419114 10.1229458940743 10.3755353131639 10.1353228505225 10.2994140366197 9.97760106665125 0.0824921133285285 0.0807373375512328 0.0835784575498774 0.080854018944355 0.0845014404872941 0.0881286592520696 0.0827713235329371 0.080332171535274 0.0861288348413838 0.0795646604994039 0.080928544848482 0.0795769778589909 0.0774590368853009 0.0785734654788127 0.080698926572321 0.0789565419686077 0.077890989116026 0.0830599221454542 0.0780509658239543 4 4|0 -|/ 13430892 13431895 13431551.7 13430533 13435776 - gene protein_coding_gene FALSE TRUE AT4G26630.1|AT4G26630.2 GTP binding / RNA binding similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71219.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897) 0.197639996789082 2.22285322611663 0.0483777271908128 1 1.42168100472618 19.9899112187083 0.197639996789082 0.0603613901952365
AT1G05950_at 1.96151740918419 2.22693992185106 1.94602321966006 1.72041505084425 1.8793162890675 2.44198612790931 1.66752747757095 1.65397106080362 1.78656541310261 1.53071766856249 2.32188323968896 2.38811264338979 1.87419706914584 1.89381983703042 2.28990786413353 2.23406378098289 2.23563307085632 2.07535177460932 2.11006111324198 0.229748407012349 0.248255020020906 0.229748407012349 0.239857185210960 0.231155127985605 0.236886889983942 0.234745724136435 0.23486439989217 0.235653529131045 0.254915785502195 0.237552316380351 0.234012109476690 0.234906215565509 0.231249498069131 0.237397742004234 0.241691362620820 0.233977343521601 0.229748407012349 0.236691538245592 1 1 - 1804576 1805478 1805006.091 1804572 1807470 - gene protein_coding_gene FALSE TRUE AT1G05950.1 similar to Double-stranded RNA binding; Fungal hydrophobin [Medicago truncatula] (GB:ABE90587.1); contains domain no description (G3D.3.30.160.20); contains domain dsRNA-binding domain-like (SSF54768) 0.237226316430883 2.22285055626839 0.0483779523910279 1 1.42167700270543 3.92383001541903 0.237226316430883 0.114547191881792
AT3G03580_at 2.05290348142199 1.69051984857347 1.81711697065954 1.95329331285452 1.46316708158359 1.47104838993137 2.20760381786606 2.07371433824297 1.68689738787036 2.35436232605100 2.00743305866776 2.01810181655747 1.83585267837069 1.84494497786832 2.09207448349083 1.70237114603964 2.29785593351061 1.76290060043571 2.02747059722242 0.219771609054959 0.215744720499421 0.212908035833576 0.214625355242199 0.215614012849928 0.217227463648435 0.211199170460264 0.212307724842581 0.219399037658681 0.21913043833261 0.211199170460264 0.214881794962516 0.221968288995295 0.223953793326643 0.227146034066506 0.211199170460264 0.215862206557773 0.224133146309189 0.22130019028418 3 3 - 860738 861222 861007.727 860519 863359 - gene protein_coding_gene FALSE TRUE AT3G03580.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.203873599807917 -2.22258867824396 0.0484000465345288 1 1.42128446284986 3.8252218754328 -0.203873599807917 0.070900561509896
AT1G12560_at 1.35641532890007 1.00551641796644 1.01151748298113 0.987271695796015 0.714208342619927 1.00717050010950 0.77760766847422 1.36539212341603 1.59973380444648 1.40342936854208 0.724840012415132 1.16496570459183 1.17586567831385 1.08275455630932 1.25292625471014 1.40110518393693 0.975778518807527 1.20235052247870 1.27724788591948 0.213479297689382 0.208236327294561 0.21504480042578 0.220516643805445 0.211256729916495 0.221376863418121 0.208715354559207 0.208236327294561 0.218655800798166 0.211115330758020 0.214367113024522 0.214346873988704 0.218917195254242 0.213869916770546 0.21615820964455 0.2116234489778 0.210251509804191 0.212012731500895 0.213025817579118 1 1|0 +|/ 4277009 4277618 4277333.6 4276517 4277888 + gene protein_coding_gene FALSE TRUE AT1G12560.1 ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Containing a conserved root hair-specific cis-element RHE. Expressed specifically in root hair cell. Identical to Expansin-A7 precursor (AtEXPA7) (Alpha-expansin-7) (At-EXP7) (AtEx7) (Ath-ExpAlpha-1.26) (EXPA7) [Arabidopsis Thaliana] (GB:Q9LN94;GB:Q9LN88); similar to ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) [Arabidopsis thaliana] (TAIR:AT1G62980.1); similar to Putative expansin-A30 precursor (OsEXPA30) (Alpha-expansin-30) (OsEXP30) (OsaEXPa1.32) (GB:Q8W2X8); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -0.250210630834898 -2.22231324529947 0.0484232947029195 1 1.42087162052391 2.30282594015697 -0.250210630834898 0.128926920246312
AT1G20780_at 4.72306655558486 4.53710499225859 4.55467697372998 4.66239943585968 4.05145088853727 4.53308113582866 3.48334183257253 4.18265551979935 4.06878924027400 3.52588088894623 4.1961893131856 3.70324987903348 3.7770751470161 4.07294338392727 3.85551947447751 4.32036832164355 4.14431566339171 4.22926456754489 3.54034520747571 0.182903908794526 0.181772095745349 0.194892652109878 0.180611006192018 0.18553913181318 0.188915173623037 0.193015018276325 0.193352792410051 0.201805591007702 0.182819937552254 0.181880239118526 0.181544387123288 0.179426107467152 0.180291298929411 0.178468369944012 0.179973417629674 0.191107739128507 0.198279982192001 0.181182729788486 1 1 + 7218449 7219279 7218895.455 7217117 7220773 + gene protein_coding_gene FALSE TRUE AT1G20780.1 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein similar to binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G76390.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50990.1); similar to armadillo/beta-catenin repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97086.1); similar to Os03g0657100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050813.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.272276911656965 2.22222675389098 0.0484305972942136 1 1.42074198313675 8.21549091560945 0.272276911656965 0.151577824324118
AT1G76850_at 8.75256328145416 8.5836930769137 8.83573842004986 8.61132710459522 8.78343271253888 8.75742289445264 8.58620596041946 8.09705593250934 8.32852325490205 8.21813897237661 8.6694121500627 8.40822598643406 8.34734936103602 8.15566020047082 8.52079715112775 8.34949136261016 8.5853463594518 8.4632375019857 8.15443206675409 0.16207508372135 0.158664012473525 0.161348475778794 0.15950019984052 0.157575684516057 0.161194266529565 0.154061290188985 0.173656888226352 0.170278918123470 0.169762507735660 0.159189441357071 0.155902421364491 0.157679094950546 0.160332757397552 0.159348790339695 0.155736505072683 0.161796579365205 0.174049304919964 0.169834313193709 1 0|1 /|+ 28858381 28859150 28858783.556 28852845 28859393 + gene protein_coding_gene FALSE TRUE AT1G76850.1 SEC5A (EXOCYST COMPLEX COMPONENT SEC5) Identical to Exocyst complex component 2 (Exocyst complex component Sec5) (SEC5A) [Arabidopsis Thaliana] (GB:Q8S3U9;GB:Q9C6K6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21170.1); similar to H0525E10.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66927.1); similar to Os04g0421900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052787.1); similar to OSJNBa0028I23.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE04638.3); contains domain SUBFAMILY NOT NAMED (PTHR13043:SF3); contains domain FAMILY NOT NAMED (PTHR13043) 0.222921315610722 2.22078528466613 0.0485524578691325 1 1.41858167326558 16.9614989764458 0.222921315610722 0.0977141240731637
AT3G14860_at 7.02241851804914 7.13218476334084 6.91289972909462 6.94024320316891 7.54446845248532 7.16201657503456 6.78712632890289 6.96129779396764 5.96259471974562 6.32407803010835 6.36495747167785 6.51642197664692 6.64651534676836 6.57974893430441 6.62162170797954 6.5336781373642 6.56837798068597 6.32269075851844 6.52425712609522 0.195208376471669 0.191353930997784 0.196340637433630 0.189484058760433 0.184698511727392 0.198807215317814 0.187349321706436 0.181322169893237 0.203625408787349 0.184280331800906 0.181322169893237 0.181799377794939 0.181322169893237 0.183289600523720 0.187675724365476 0.181322169893237 0.185936257426503 0.184224686916666 0.183807115327080 3 3 - 4998600 4999119 4998885.636 4998364 5001053 - gene protein_coding_gene FALSE TRUE AT3G14860.1|AT3G14860.2 NHL repeat-containing protein similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70280.2); similar to Os02g0234200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046378.1); similar to NHL repeat [Medicago truncatula] (GB:ABE85368.1); similar to Os02g0730400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048013.1); contains InterPro domain NHL repeat; (InterPro:IPR001258) 0.206545859737104 2.22063584778568 0.0485651079124262 1 1.41835773935147 13.4526126694520 0.206545859737104 0.0753138652688395
AT2G14120_at 7.16511594803418 7.26097522703625 6.93453161405039 7.03739264038942 7.30616919603496 7.38936405711743 6.63810674643783 6.40515672866573 5.92956582017962 6.56182604166670 6.30063500949138 6.51216527057524 6.03451066670271 6.40011294238676 6.2716101222317 6.5581710394884 6.58836327800006 5.89601456041543 6.2171911191126 0.21140275671116 0.211456426847937 0.219229504545831 0.216768525723569 0.209637562458260 0.213873599916167 0.209637562458260 0.217016586679997 0.231958908342668 0.209637562458260 0.209874891882074 0.209637562458260 0.215223737799497 0.211649891712062 0.217286507688770 0.213548511698634 0.217955181000044 0.214622464973852 0.211403695080534 2 0|2 /|- 5961336 5962260 5961751.125 5960278 5967205 - gene protein_coding_gene FALSE TRUE AT2G14120.1|AT2G14120.2 dynamin-like protein 2b (ADL2b) Identical to Dynamin-related protein 3B (Dynamin-like protein 2b) (DRP3B) [Arabidopsis Thaliana] (GB:Q8LFT2;GB:Q8LPH8;GB:Q8S8A4;GB:Q8S943;GB:Q9SI47); similar to ADL2 (ARABIDOPSIS DYNAMIN-LIKE 2), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT4G33650.1); similar to OSJNBa0072D21.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE02157.2); similar to Dynamin central re (GB:ABD28549.1); similar to Os01g0920400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045220.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.191764624264852 2.22062940199121 0.048565653629009 1 1.41834808031591 13.2952976137947 0.191764624264852 0.0492389901428373
AT3G14570_at 1.94809714366595 2.70817323210352 2.15590995745560 2.01845285989579 2.05511905212498 2.14357281915853 3.36897560522491 2.63003281597624 3.76295362761602 4.40078270631734 4.17143107619404 5.74416908009829 3.30398934589273 3.76721426915250 5.11609395772756 4.86879455589503 2.9464589748346 4.95320693262526 5.04844241559377 0.264014912797493 0.264002584831202 0.264969112369441 0.263165322969116 0.266601379706264 0.274473026307013 0.261798906120404 0.262701733375232 0.265296947591455 0.262408167903833 0.26699337926589 0.271493461933422 0.263682742367538 0.267449373363350 0.272850507283711 0.270038562791774 0.272150723996997 0.268679594355046 0.265828121466473 3 3 + 4901863 4902545 4902266 4892650 4902635 + gene protein_coding_gene FALSE TRUE AT3G14570.1 ATGSL04 (GLUCAN SYNTHASE-LIKE 4); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a protein similar to callose synthase similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93351.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.307847918103566 -2.21986528178097 0.0486303875022732 1 1.41720310684631 6.7600313643148 -0.307847918103566 0.185618421800846
AT3G46770_at 2.05532589724815 2.16057815779737 2.11648987473239 2.33396364667793 1.48998097409677 1.49039239933166 1.40066900173175 2.08682855810914 1.54321700698138 1.93558824043289 1.84212015498006 1.36861418449565 1.69671381011599 1.23069062025386 0.700096930800724 1.90003528102615 1.15896909973498 1.81427543420999 2.19123318836807 0.184805966058751 0.188417645549614 0.203194361986047 0.194831622198498 0.186254317588711 0.188342120412450 0.191760021470036 0.192151826390453 0.187126256147313 0.185267972457023 0.214456654507588 0.188712410348173 0.194101935239679 0.189025509238061 0.200397371671871 0.186436479776018 0.184935193845821 0.189469939196159 0.189551931119402 3 3|0 +|/ 17235556 17236277 17235937.2 17234939 17236301 + gene protein_coding_gene FALSE TRUE AT3G46770.1|AT3G46770.2 transcriptional factor B3 family protein similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT5G60140.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE81219.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340)|similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT5G60130.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.247108526243593 -2.21981709657419 0.0486344723690099 1 1.41713090927314 3.56875468940546 -0.247108526243593 0.125889148472552
AT4G25960_at 9.41217407906084 9.43940288261603 8.58081569299577 8.93099505074328 9.78184611490512 9.55674386216707 9.74408108326134 9.88554268742392 10.6431978666273 10.1974166478367 10.7552976655140 10.6323677882032 10.4583172175150 10.6225231415533 10.3199768786015 10.1298511317829 9.75715544631795 10.3452846528635 10.3113433429323 0.076139557634348 0.0786896045092803 0.0859816183687732 0.0825798766506929 0.0766003961894414 0.078711370593559 0.0883453691353647 0.0777770305016993 0.082189762026076 0.077218775165908 0.076897670370203 0.0759099948912995 0.0779752299195665 0.0792277394598922 0.083052277238269 0.0763081720591122 0.080477349341861 0.0790361466275758 0.0783237216320262 4 4 + 13182640 13183357 13183030.818 13177418 13183640 + gene protein_coding_gene FALSE TRUE AT4G25960.1 PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 2 (P-glycoprotein 2) (MDR2) [Arabidopsis Thaliana] (GB:Q8LPK2;GB:O04711); similar to PGP10 (P-GLYCOPROTEIN 10), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G10680.1); similar to PGP13 (P-GLYCOPROTEIN 13), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G27940.1); similar to ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19), ATPase, coupled to transmembrane movement of substances / auxin efflux transporter [Arabidopsis thaliana] (TAIR:AT3G28860.1); similar to H0423H10.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09461.2); similar to P-glycoprotein [Gossypium hirsutum] (GB:AAF23176.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59582.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.207044607529626 -2.21944396482992 0.0486661154671896 1 1.41657184960170 19.7972415280263 -0.207044607529626 0.076232376715428
AT4G15420_at 7.57574939473469 8.01177202646928 8.12053583932117 8.38270888071431 8.48104062839284 8.30378286524056 8.0887591247075 7.95175536762588 8.12937241884468 7.9536670282455 8.03856776061961 8.1408248010082 7.93531631572679 8.35071493937186 7.65052096938778 8.06808954424956 8.00761329233582 8.10280474575826 7.942857505611 0.158217247695095 0.149834775248076 0.150585192403472 0.146868858850675 0.153799840401532 0.159488286147993 0.155584917885152 0.152190114255501 0.163429175075736 0.148821620185775 0.149269869648323 0.146868858850675 0.153907049008457 0.154840985831837 0.158182253400261 0.146868858850675 0.168196630718282 0.157633141082655 0.146868858850675 4 4 + 8825270 8825910 8825631.364 8823725 8826096 + gene protein_coding_gene FALSE TRUE AT4G15420.1 PRLI-interacting factor K similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.3); similar to Os01g0534800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043255.1); similar to hypothetical protein AN6987.2 [Asper (GB:XP_664591.1); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854); contains InterPro domain Peptidase, archaeal and bacterial C-terminal; (InterPro:IPR007280); contains InterPro domain SIAH-type; (InterPro:IPR013323) 0.221591151761534 2.21942509318997 0.0486677163828045 1 1.41654357518869 16.1372324477129 0.221591151761534 0.0962035738316997
AT1G21730_at 4.62633044792821 4.15148260145671 3.9560966328608 3.55677161655394 4.97102665249546 4.51096936010359 4.01512561851478 4.01367944451221 3.72191400526749 3.95075996191969 4.64814067783031 4.66215458294568 4.41692173443683 4.56286331186747 4.30833770122590 4.28742406821379 4.16587164387587 4.10737452398917 4.12707562962972 0.186373493270439 0.180301470069166 0.186109147223146 0.181399225194001 0.190482665973282 0.181305789726499 0.184465588095143 0.181338891958281 0.182861504691136 0.179624307538147 0.178432456166309 0.186200012398068 0.186994446716561 0.19010843620183 0.182866241285769 0.181092142746857 0.184404656839055 0.191796817595931 0.183558201215218 1 1|0 +|/ 7635207 7636140 7635662.8 7630096 7636583 + gene protein_coding_gene FALSE TRUE AT1G21730.1 kinesin-related protein (MKRP1) similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G12020.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to kinesin-related protein (MKRP2) [Arabidopsis thaliana] (TAIR:AT4G39050.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to OSIGBa0102D10.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67300.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Protein of unknown function DUF465; (InterPro:IPR007420) 0.254348851171483 2.21937029826304 0.0486723650219607 1 1.4164614791788 8.3892532448801 0.254348851171483 0.133666749022275
AT2G04340_at 6.1954662735754 6.19500233835748 6.52389597071663 6.14118508139827 6.67737093652356 6.67005928014984 6.59704352867968 6.02394170715503 5.82828312225928 5.73286026826477 5.87083871207485 5.64441295575871 6.1905859569445 6.13464369443218 6.0675377605751 5.84530291197237 6.4886522268844 6.18350004397304 5.90320495947125 0.158080564506543 0.160055392975022 0.166854996562741 0.156733592340002 0.162172851584344 0.165386496833709 0.167494004743964 0.161241931268732 0.16705760535908 0.154544991454633 0.162567927330224 0.161533100879754 0.160789198426594 0.157286778936308 0.161373723851995 0.160240323258992 0.159468350192093 0.156110358446229 0.156873486891692 2 2 + 1514422 1515141 1514756.273 1513509 1515537 + gene protein_coding_gene FALSE TRUE AT2G04340.1 similar to Os09g0478400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063471.1) 0.240999594041821 2.21904515267635 0.0486999581528617 1 1.41597434577246 12.3153125059822 0.240999594041821 0.119265552785734
AT4G22600_at 0.721463014988056 0.798676057674944 1.63473595133424 1.48165751269405 1.26958699683247 0.982445790188012 1.41359028329662 1.22674035313219 0.873548165429335 1.17443354749095 1.23478725794314 0.826387697958486 0.736444580920683 1.15877823990143 1.26242492827445 0.734368347166463 1.47513626780269 0.896427788085745 0.775503421850907 0.198191984337904 0.199822152628388 0.200655055069668 0.198191984337904 0.198191984337904 0.201732070163341 0.198191984337904 0.198191984337904 0.203771727506507 0.204691627586895 0.204139426341558 0.205427221617913 0.208062128705116 0.198618239798314 0.200918529046864 0.199505947463632 0.203620246308830 0.201401074800233 0.212059655345776 4 4 - 11900275 11900781 11900522.545 11900222 11901043 - gene protein_coding_gene FALSE TRUE AT4G22600.1 similar to Os02g0661300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047646.1) 0.200710906202739 2.21894908333902 0.048708113838611 1 1.41583041888686 2.18199004506609 0.200710906202739 0.0662954847764818
AT3G09750_at 1.00773067500198 0.545901627494427 1.11154895834552 0.894237979365336 0.919490447648327 1.23104542490894 0.942437061734377 0.842256323837281 1.12106913184481 0.952460594033537 1.4779826528651 1.20014918333991 1.14239338848842 1.59646160541901 1.08914670598419 1.05541970484913 1.38622143720324 0.96124728159964 0.884432357383997 0.211382512514891 0.212094421678356 0.218520390949382 0.211730245630235 0.211299756492959 0.224229662956468 0.220484721539765 0.210969448556117 0.221922861889647 0.227029936559045 0.217065617401746 0.215983842900173 0.210969448556117 0.215075701672324 0.220536465947363 0.216263418542988 0.214977687782112 0.230277700488334 0.210969448556117 3 3 - 2992334 2992526 2992447 2992187 2992574 - gene protein_coding_gene FALSE TRUE AT3G09750.1 unknown protein 0.228569832215572 2.21868652365622 0.0487304101812948 1 1.41543707340176 2.04913861532004 0.228569832215572 0.104924915742090
AT1G45150_at 4.84316168546152 5.30267442679659 4.90253016539817 4.68178253273451 5.80784591730299 5.77647291843521 4.23741055227049 4.17230101405034 4.37087143709265 4.47533290705014 4.19618455118486 3.84283595289554 4.37994382735183 4.38322998270979 4.08257486048515 4.51060856397457 4.06991130060751 4.10256597972883 4.40518001890886 0.222575669989363 0.221710216432589 0.226594610545091 0.233643911469195 0.231379972417109 0.24309028876549 0.228722497399982 0.220855349734242 0.221930748508696 0.220855349734242 0.220855349734242 0.228482920585403 0.220855349734242 0.221457511205548 0.224551651809424 0.222611451800562 0.22719775052172 0.221181705858820 0.223955701809838 1 1 - 17080130 17081105 17080488.2 17079888 17084886 - gene protein_coding_gene FALSE TRUE AT1G45150.1 similar to conserved hypothetical protein [Serratia proteamaculans 568] (GB:ZP_01534628.1); similar to Os07g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060105.1) 0.216062360086514 2.21854395163462 0.0487425213662607 1 1.41522348975106 9.27207740074846 0.216062360086514 0.0891029868313742
AT1G53050_at 7.45752189798154 7.74059311217497 6.83243566209146 6.76066175840021 7.69108817750078 7.310209954534 7.67699577837692 7.68352918687581 7.1025366387297 7.44249281158946 7.69398635252412 7.73989395078805 7.55269787354767 7.57897613984268 7.33896637882416 7.67521957331208 6.99276314986888 7.14013841427175 7.64376714589111 0.179297515611499 0.178854475270152 0.179269133069133 0.172844048853276 0.171967560456290 0.181194495261456 0.179801649615924 0.179350172635055 0.187947178801184 0.177890956929305 0.179884013222185 0.171967560456290 0.183221454098977 0.183860175382747 0.176573603027094 0.171967560456290 0.182839988152106 0.177803286910109 0.175001839234953 1 1 + 19778523 19779146 19778794.636 19775713 19779415 + gene protein_coding_gene FALSE TRUE AT1G53050.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G09600.1); similar to Os08g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060831.1); similar to putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa (japonica cultivar-group)] (GB:BAC20085.1); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.21162320433418 -2.21810859941210 0.0487795214255145 1 1.41457132590538 14.8243023215882 -0.21162320433418 0.0830647445254039
AT2G16040_at 1.78214639062964 2.56346031353576 2.20980512389284 2.35798245912083 1.5839421972867 1.99511668561697 2.09493573220189 2.35373681183921 2.14294696188169 2.60429519524573 1.62054882295980 1.7575530526648 2.25046367328120 1.99130398730790 1.94710202927796 2.11374021300723 2.17640748932026 2.35817494003035 2.53786670472194 0.210636564151861 0.208040729454842 0.203043037497741 0.206235019378511 0.205746621685412 0.210636045758905 0.209406063056651 0.215575221960795 0.206426993765214 0.206639474187128 0.202662013695607 0.203822518894137 0.209664755249871 0.204994920029639 0.212168791066766 0.203872254530426 0.207549045221114 0.201970632506037 0.219960887272491 2 2 + 6984086 6984634 6984385.636 6983099 6984676 + gene protein_coding_gene FALSE TRUE AT2G16040.1 hAT dimerisation domain-containing protein / transposase-related similar to hAT dimerisation domain-containing protein / transposase-related [Arabidopsis thaliana] (TAIR:AT2G06500.1); similar to Hypothetical protein with similarity to putative Ac-like transposases [Oryza sativa] (GB:AAM08782.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain HAT dimerisation; (InterPro:IPR008906) -0.28165802010378 -2.21791908563257 0.0487956363675096 1 1.41428744410512 4.3452814125643 -0.28165802010378 0.16127083130939
AT4G23180_at 9.89949225311041 9.81975165377558 9.96385716561385 9.69922635423115 9.74488040188023 9.55598830430263 8.81840438919453 8.5030725163632 10.0570987946281 9.1350805497682 9.49804213097978 10.1089155027591 8.90334013744942 9.6535984051095 9.28057358202155 9.16598808901303 9.13507333147577 9.58722892082062 9.24503390971735 0.100047108431736 0.0982297147328435 0.096587692974639 0.100724114308082 0.0982103083149076 0.102100093038476 0.101523831904211 0.103895858314839 0.0997483384477094 0.103445197417358 0.102656558678229 0.097490900067573 0.0987970002973343 0.100876056223160 0.100359752435952 0.098726484445914 0.102333148648879 0.0997618088768212 0.0997574864064302 4 4|0 +|/ 12140267 12140762 12140592.1 12138148 12140932 + gene protein_coding_gene FALSE TRUE AT4G23180.1 CRK10 (CYSTEINE-RICH RLK10); kinase Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Arabidopsis thaliana] (TAIR:AT4G23140.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.209165890572537 2.2178329833986 0.0488029595893069 1 1.41415846994543 18.9484171783880 0.209165890572537 0.0795867926837277
AT3G54610_at 4.46101102322228 5.22260527530885 4.32736184349164 4.75593462321932 4.42509599855112 4.3693057893899 4.45878564933395 4.85815821978289 4.69027625571741 4.54734393688959 3.90033532663803 4.43473871575084 4.50699381965458 4.13466395502953 4.09443669037788 4.38983325849757 4.20610715733418 4.44252728976948 4.43403987108963 0.193454632463719 0.191130668450748 0.192201463209273 0.195460724046183 0.193848040986444 0.196487922336959 0.187984787116684 0.197830523347798 0.196109051783183 0.191610558487174 0.197205928696445 0.198033564698773 0.187343998370859 0.19456656194971 0.197819189712152 0.187343998370859 0.196315889187662 0.187343998370859 0.188906722401375 3 3 + 20226741 20228326 20227741.727 20224538 20228631 + gene protein_coding_gene FALSE TRUE AT3G54610.1 GCN5 (Histon acetyltransferase HAT1) Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. Identical to Histone acetyltransferase GCN5 (EC 2.3.1.48) (AtGCN5) (HAG1) [Arabidopsis Thaliana] (GB:Q9AR19;GB:O22654;GB:Q7G1G9;GB:Q9M1G7); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G63330.2); similar to histone acetyl transferase [Zea mays] (GB:AAL33654.1); similar to Os10g0415900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064604.1); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.287115486424847 -2.21752314474283 0.0488293208854358 1 1.41369436978931 9.02024457671935 -0.287115486424847 0.166556589503487
AT1G50010_at 7.5444916854044 6.86357892631081 5.15601893557817 5.32756057095887 6.2374202546994 5.73931561366918 7.15614369170685 7.25036798279659 8.41389720508206 6.84544754712557 9.19535022483367 9.67417561245542 7.84577332709368 8.9935996909265 9.83850610740833 8.43665235887936 7.9073647306845 8.68602090253567 8.06141956769893 0.172667670595707 0.174598924425840 0.184241460015326 0.185451031426281 0.179196658983344 0.185353364079758 0.171812467856739 0.175358980915091 0.183289003122097 0.188577879970591 0.175190038168931 0.174582444251940 0.174518226232827 0.176764355215005 0.181417423326679 0.174129088849029 0.176514531260439 0.170773091790235 0.173280561825442 1 1 + 18522886 18523333 18523019.727 18521254 18523668 + gene protein_coding_gene FALSE TRUE AT1G50010.1 TUA2 (tubulin alpha-2 chain) Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA6 (tubulin alpha-6 chiain) [Arabidopsis thaliana] (TAIR:AT4G14960.2); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to TUA4 (tubulin alpha-4 chain) [Arabidopsis thaliana] (TAIR:AT1G04820.1); similar to Tubulin alpha chain (GB:P33629); similar to alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] (GB:AAV92352.1); similar to putative tubulin alpha-2/alpha-4 chain [Brassica napus] (GB:AAQ81585.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) -0.269987232555815 -2.21751820849892 0.0488297409748685 1 1.41368697606852 14.7072464456344 -0.269987232555815 0.149875247072413
AT1G48380_at 3.97117230052799 3.91383462293316 3.92750047976866 4.30260375768105 4.55883970954616 4.34155102640160 4.22482411937505 3.78829429796543 3.84831381700429 4.03809572171683 4.04929735283606 4.21621694825133 4.08856368920152 3.78062292951236 3.87517702246286 3.74115775449850 4.26245295036096 4.4732169907863 3.83989152102513 0.217237269644333 0.208449304578518 0.220933990559587 0.206983002505568 0.218199387430816 0.213690798122134 0.212727416725746 0.21207650801712 0.225279513876654 0.210475418930337 0.206983002505568 0.212041301635525 0.210420817737173 0.218670809455887 0.214212799413938 0.218909502081905 0.210831353932460 0.220488598440277 0.208197122559790 1 1 - 17881371 17882187 17881759.091 17881081 17882938 - gene protein_coding_gene FALSE TRUE AT1G48380.1 RHL1 (ROOT HAIRLESS 1) Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A. similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56859.1); similar to Os07g0172200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058997.1) 0.230081796486139 2.21715072282427 0.0488610248417315 1 1.41313655456570 8.11338015160196 0.230081796486139 0.106925200862404
AT1G11780_at 5.58534333114804 5.94576853183547 5.55499675027047 5.56263663222013 5.74224325536442 5.74967589201555 5.55853816899218 5.21495518183315 4.07358253370218 4.78590641738677 4.45043322160766 5.20188635285043 4.81196741962762 4.71697389407158 4.6493933570451 4.77693909620881 5.35953329382866 4.62432651676989 4.55834677788664 0.248553542446117 0.253546496242788 0.253327355285908 0.24227115025156 0.247334320661795 0.248933292061369 0.254587422698809 0.243974288124037 0.258050218455085 0.243849384368979 0.249575569270775 0.242868237857535 0.251652676629746 0.256419578540892 0.258231291728668 0.243406105117546 0.24227115025156 0.249918599667574 0.253343150124382 1 1|0 -|/ 3977660 3978468 3978140.556 3976838 3979194 - gene protein_coding_gene FALSE TRUE AT1G11780.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein Identical to Alkylated DNA repair protein alkB homolog [Arabidopsis Thaliana] (GB:Q9SA98); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G14160.1); similar to Os11g0488500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067920.1); similar to DNA alkylation damage repair protein (ISS) [Ostreococcus tauri] (GB:CAL50217.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.213778281679062 2.21712090414784 0.0488635641313638 1 1.41309189329102 10.2625414947898 0.213778281679062 0.0861925513952707
AT2G16090_at 4.49662421680352 5.03792545782543 4.58477045782652 4.78935004113539 5.53664203674034 4.68857886734841 5.16995527401018 4.70944642392501 4.23022050317551 3.56972308769017 4.53887080786595 4.77805577251274 4.38968354869903 4.61779876622283 4.63236902591969 4.39462847177777 3.75474026113854 4.54863492385089 3.80514601361759 0.261515001938189 0.266335484157488 0.279067666484356 0.283684519705281 0.269825990675681 0.274643151456816 0.25679371854629 0.259249562454809 0.286697518452506 0.267871250236353 0.254648516185092 0.259423750433047 0.257338074898194 0.263099009171918 0.261962484887376 0.254648516185092 0.257759769674097 0.259089821421047 0.268733840013764 2 2 - 6994727 6995281 6994963.7 6993916 6997133 - gene protein_coding_gene FALSE TRUE AT2G16090.1 zinc finger protein-related similar to IBR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G34370.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G27710.1); similar to Putative RING zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19129.1); similar to Os03g0233500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049474.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.31741600168782 2.21664952683220 0.0489037223137511 1 1.41238590743600 9.03926704632328 0.31741600168782 0.194726055350526
AT3G51720_at 2.14939360703458 2.52589905028998 2.30110107475943 2.37897804944633 2.03913993364706 2.55707787901578 2.48987523885455 2.93434473727850 2.29547467369912 2.76294496597555 2.98637076994683 4.24094850183184 2.66750113293917 3.4492656318387 3.62365329338963 3.09939863513227 3.23502424072379 3.48054834925802 2.83269293079436 0.229303534458041 0.219298283329551 0.218887073052581 0.223371658566823 0.222943688371703 0.228521448579703 0.217569291148519 0.227364566187022 0.218893279549348 0.220913276651094 0.218630018229714 0.222935334739893 0.219568048546182 0.220074672516962 0.23949102862987 0.215484224746395 0.236940485244226 0.227351384662192 0.221378178402058 3 3 + 19196906 19197412 19197196.455 19196030 19197613 + gene protein_coding_gene FALSE TRUE AT3G51720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38370.1); similar to putative myosin heavy chain [Dendrobium grex Madame Thong-In] (GB:AAD20814.1); similar to Os07g0677900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060633.1); similar to Os03g0339700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050061.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.255832019206136 2.21654016024665 0.0489130441246614 1 1.41222211490747 5.41108103439355 0.255832019206136 0.135562017404411
AT4G23710_at 7.74350428895356 7.41968116607941 7.53264087364836 7.54802388843222 7.28677196030896 7.26525730035008 6.95909712172984 7.03125589023924 7.45461033750457 7.2731626055511 7.87423663058822 7.91913545770444 7.49782368730618 7.706806721744 7.68877845223952 7.32340996953545 6.24219304036501 7.46390418615506 6.851742403116 0.144864081426322 0.142929193609536 0.152688276365774 0.148131152428974 0.143879844171881 0.152549474032646 0.146757687973050 0.150276104696711 0.149173865586237 0.147264774062045 0.14230119502652 0.144353232759734 0.145582873235151 0.141651908722818 0.145498007495409 0.144187351562602 0.160991654604314 0.143490049241587 0.145445512010072 4 4|0 +|/ 12350589 12351252 12350931.875 12350099 12351634 + gene protein_coding_gene FALSE TRUE AT4G23710.1 (VACUOLAR ATP SYNTHASE SUBUNIT G 2, VACUOLAR ATP SYNTHASE SUBUNIT G2); unknown protein Identical to Vacuolar ATP synthase subunit G 2 (EC 3.6.3.14) (V-ATPase G subunit 2) (Vacuolar proton pump G subunit 2) (VATG2) [Arabidopsis Thaliana] (GB:O82629;GB:Q9SUQ6); similar to VMA10 (VACUOLAR MEMBRANE ATPASE 10) [Arabidopsis thaliana] (TAIR:AT3G01390.2); similar to Vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (GB:O82702); contains InterPro domain Vacuolar (H+)-ATPase G subunit; (InterPro:IPR005124); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019) 0.195576562540951 2.21652235068660 0.0489145622753221 1 1.41219544271561 14.6771329613487 0.195576562540951 0.0575957069425651
AT1G04390_at 4.75849380443303 5.04240600716016 4.41459901708896 4.35547553197032 5.29622672569167 5.034163093813 5.27354510703252 4.69176541053501 4.92692932309864 4.93373627352134 4.58117571258463 4.60227025539815 4.88012791952796 4.24437073277008 4.35221602459296 4.60067836978486 5.5008885032754 4.77255824480575 5.17048737201421 0.217449469209633 0.222540211834457 0.222675509956969 0.226037663776567 0.226967095044689 0.224456840582395 0.22895918226265 0.233135133258521 0.225918847438174 0.219972750859346 0.220524260852516 0.217449469209633 0.217449469209633 0.217449469209633 0.224599905012457 0.225029823152063 0.231670030634754 0.224498081950825 0.224090698001360 1 1 - 1179707 1180580 1180112 1179362 1183703 - gene protein_coding_gene FALSE TRUE AT1G04390.1 binding / protein binding similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46540.1); similar to Os06g0674800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058343.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.242517546342392 -2.21624758477436 0.0489379900192601 1 1.41178395265354 9.70941935882585 -0.242517546342392 0.121292270437221
AT1G19220_at 5.04888365738619 5.09342678290328 5.21477204976439 5.34373291386574 6.42849918782874 6.16882184099729 6.09611167806152 5.45957027984753 4.72715730600155 4.75763835710082 4.7879014323736 5.34015381029283 5.18283256742396 5.46602335484556 4.24188125137856 5.17867753556373 5.64261689986774 4.53054615051844 5.29249112920311 0.217404386190583 0.211129260773995 0.212211151313743 0.216236350089976 0.216051956230502 0.231200001632047 0.211840793419469 0.212278656420765 0.212780504807014 0.218349082912729 0.220853512173463 0.211129260773995 0.212991248569363 0.219944298134784 0.228007824382143 0.220087142819986 0.221342236583703 0.213320230713487 0.221163892362665 1 1 - 6628396 6629113 6628865.455 6628059 6632988 - gene protein_coding_gene FALSE TRUE AT1G19220.1 ARF19 (AUXIN RESPONSE FACTOR 11); transcription factor Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. Identical to Auxin response factor 19 (Auxin-responsive protein IAA22) (ARF19) [Arabidopsis Thaliana] (GB:Q8RYC8;GB:O49961;GB:Q9LMA4); similar to NPH4 (NON-PHOTOTROPHIC HYPOCOTYL), transcription factor [Arabidopsis thaliana] (TAIR:AT5G20730.2); similar to auxin response factor 2 [Cucumis sativus] (GB:BAD19062.1); similar to Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation [Medicago truncatula] (GB:ABE90964.1); similar to auxin response factor 1 [Cucumis sativus] (GB:BAD19061.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.242512629872818 2.21621734372722 0.048940569158962 1 1.41173866457223 10.5927729935243 0.242512629872818 0.121290490574708
ATCG00650_at 9.39340606410494 9.97820888830489 9.16305738742589 9.37287493583774 9.50874022805104 9.59396277124802 9.89736762452728 10.3861501893119 11.3245628951621 10.9244821177383 11.4177642251942 11.5763040612158 10.9319068487439 11.0744448983311 11.1008814535738 11.2892268585479 10.4638893848159 11.0089498092098 11.1085747985491 0.232928964219295 0.232477298235529 0.242807166280256 0.249069859824856 0.229974879370575 0.251526345304988 0.219934982483462 0.227756546001652 0.215420391118645 0.208623325036665 0.215380816453491 0.2145491609523 0.214139127783286 0.219880413791656 0.215044272533240 0.218079498645664 0.226830940520665 0.218199042890270 0.208623325036665 C C + 67926 68191 68060.364 67917 68222 + gene protein_coding_gene FALSE TRUE ATCG00650.1 chloroplast-encoded ribosomal protein S18 Identical to Chloroplast 30S ribosomal protein S18 (rps18) [Arabidopsis Thaliana] (GB:P56807); similar to Ribosomal protein S18 [Gossypium barbadense] (GB:BAF41269.1); contains InterPro domain Ribosomal protein S18; (InterPro:IPR001648) -0.257705011142021 -2.21584361846961 0.0489724534489928 1 1.41117900093751 20.7752847842367 -0.257705011142021 0.137596308881899
AT1G44478_at 1.82870690467594 1.59096765187422 2.07360492518742 1.8638524584943 1.69716984041095 1.87241560101228 1.55155215043727 1.68965108960883 1.93704014857116 1.76697797950421 2.20125053144080 1.94436716245297 1.62306612039784 1.70855435162174 2.38235692903568 1.90887420591246 1.95682619226271 2.06039336510163 1.64489693948492 0.185148641900946 0.188863454142726 0.185148641900946 0.185148641900946 0.18701438312304 0.188691232703892 0.185620782232164 0.1895431325305 0.187655465177277 0.185148641900946 0.188066739042839 0.188471476183149 0.188839372772737 0.191959287835200 0.188655936204110 0.187130686320962 0.189128498316786 0.191415435986453 0.18932927932777 1 1|0 -|/ 16854786 16855654 16855217.778 16854781 16855678 - gene protein_coding_gene FALSE TRUE AT1G44478.1 similar to ATCYP59/CYP59 (CYCLOPHILIN 59), RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT1G53720.1); similar to Os06g0670500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058329.1); similar to PREDICTED: similar to CG5808-PA [Tribolium castaneum] (GB:XP_968771.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.20089033760932 2.21566119803413 0.0489880238258769 1 1.41090583221601 3.64908147594515 0.20089033760932 0.0670904259380658
AT1G73920_at 10.1536623637511 9.97819042886861 10.4154201715469 10.3740776977678 10.6408742637033 10.4788654352531 10.5488223603752 10.4458787002557 9.90966926369825 10.6417278770669 10.5658331551288 10.5359318545708 10.5312827947777 10.5866671186697 10.1619443822356 10.4817439174717 10.8372481939597 10.5507227174979 10.4918541620408 0.0728469840780845 0.0713525800040042 0.0727985266674851 0.0751510195037146 0.071361428617836 0.0719311412154642 0.0713525800040042 0.0733922929738141 0.087303774360209 0.0748370451458796 0.0784316009680799 0.0729844064801666 0.0743101043162881 0.076394552847078 0.0794347745906134 0.071725061018086 0.0732585036811615 0.0793666962043565 0.0740439453827335 1 1 + 27797801 27798245 27798002.636 27794537 27798575 + gene protein_coding_gene FALSE TRUE AT1G73920.1|AT1G73920.2 lipase family protein similar to lipase family protein [Arabidopsis thaliana] (TAIR:AT1G18460.1); similar to Esterase/lipase/thioesterase; AB-hydrolase associated lipase re (GB:ABE91610.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain AB-hydrolase associated lipase region; (InterPro:IPR006693) 0.189671130637746 2.21545921404181 0.0490052695624792 1 1.41060337596158 20.8190600282190 0.189671130637746 0.0455708686824162
AT3G22180_at 3.2530833503912 3.46734053055211 2.77549306639895 3.0934716111597 3.3837111734215 3.44769576413322 3.00099008348782 2.46823683843692 2.56827865235942 2.14568383671724 2.4337213384615 2.60989361220106 2.39090797658969 2.93920180477887 2.83422477346247 2.59375023504682 2.83495608224757 2.62619520418182 2.22626277736462 0.222716487808319 0.219489909642009 0.219798535140522 0.220929014476519 0.217683160976563 0.228886444990961 0.224333711332807 0.219697220121398 0.214426731443931 0.218260927192233 0.222648027853474 0.217238650999363 0.213086069889338 0.222541268527270 0.216189448507054 0.219973469653286 0.220200488053604 0.217724467925939 0.220608368285324 3 3 + 7829925 7830444 7830158.909 7827043 7830820 + gene protein_coding_gene FALSE TRUE AT3G22180.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT4G15080.1); similar to DHHC-type zinc finger domain-containing protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46102.1); similar to Os08g0556400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062475.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.236064079642730 2.21538129361845 0.0490119240930578 1 1.41048669814871 5.59688520250684 0.236064079642730 0.114129064305641
AT3G46170_at 0.694312048650662 0.702095068065621 0.904537602942618 1.00107320111715 1.24481418663696 1.23096624389070 1.14227476081939 0.746946932220379 0.934665742629993 1.02861340921952 1.05290403077928 1.43198284139414 1.29616987541623 1.28809560236217 1.00287655229137 0.996038608770142 1.03457870863495 0.997247885320474 1.05348412426107 0.189401066830167 0.185998515311584 0.191308726422944 0.183026263237685 0.183026263237685 0.186063708663937 0.188966527669529 0.187898364308347 0.18842316820784 0.185812579661398 0.190592270841422 0.191059237903753 0.197991956928119 0.186025764018479 0.183213722084935 0.183026263237685 0.189989024980564 0.195915654007009 0.184005360330496 3 3 - 16963742 16964097 16963966.636 16963708 16964574 - gene protein_coding_gene FALSE TRUE AT3G46170.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G55290.1); similar to putative short-chain type alcohol dehydrogenase [Solanum tuberosum] (GB:AAN32641.1); similar to putative short-chain type alcohol dehydrogenase [Solanum tuberosum] (GB:AAK29646.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.202919805312707 2.21508910752317 0.0490368849588902 1 1.41004919106352 2.02991476645524 0.202919805312707 0.0704771475766232
AT1G73370_at 3.18851619786546 3.65853857056407 3.08840501261836 2.69008285752192 2.40461473086338 2.92289372371095 3.48822501775705 3.82172954392077 3.25454700596332 4.1373087251721 4.5630081922463 5.38978776492443 3.60545108941633 3.56860383665376 4.71900241251496 4.52006517530656 3.00878708245273 3.83530863873325 4.39738110806054 0.216760474751020 0.22032212489972 0.220401590770021 0.221236353898295 0.226037010560727 0.226734228406422 0.215117839212396 0.227926878692666 0.215117839212396 0.216352743824284 0.215767897253389 0.226862941618781 0.215117839212396 0.228871448596318 0.222246524605998 0.215148385311223 0.234083100357246 0.22116432018164 0.217642986669715 1 1 - 27588200 27588917 27588416.818 27588140 27591987 - gene protein_coding_gene FALSE TRUE AT1G73370.1 SUS6; UDP-glycosyltransferase/ sucrose synthase Encodes a protein with sucrose synthase activity (SUS6). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TAIR:AT5G20830.2); similar to SUS3, UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G02280.1); similar to SUS5, UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TAIR:AT5G37180.1); similar to H0211A12.6 [Oryza sativa (indica cultivar-group)] (GB:CAH66603.1); similar to sucrose synthase [Coffea arabica] (GB:CAJ32597.1); similar to sucrose synthase [Citrus unshiu] (GB:BAA88904.1); contains InterPro domain Sucrose synthase; (InterPro:IPR000368); contains InterPro domain Sucrose synthase, plants and cyanobacteria; (InterPro:IPR012820); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.270623545191232 -2.21505498044870 0.0490398011587007 1 1.40999809181353 7.19837440040093 -0.270623545191232 0.150807975524252
AT3G47390_at 4.18857855987514 4.24448421044056 4.34784749332339 4.10424975433184 4.51618543545486 4.22972005707316 4.62560308971779 4.82164881620288 4.33553788779198 4.24595302079282 3.96488349044681 4.31626789701397 3.79222688293192 3.69781101012028 4.23907700489715 4.33100145255529 4.48354123663516 3.95369773474728 4.42956687084901 0.223273771190373 0.208896852765176 0.215073053395753 0.209542345370918 0.208298849969683 0.212478109377091 0.212188806264579 0.209701921423029 0.213428244715538 0.212177340605414 0.208298849969683 0.208298849969683 0.214571699019770 0.208298849969683 0.208298849969683 0.208298849969683 0.212253281303001 0.215856290781601 0.211038384451454 3 3 + 17474833 17475616 17475306 17473079 17475640 + gene protein_coding_gene FALSE TRUE AT3G47390.1 cytidine/deoxycytidylate deaminase family protein similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT4G20960.1); similar to Os02g0473000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046836.1); similar to putative riboflavin biosynthesis protein ribD [Oryza sativa (japonica cultivar-group)] (GB:BAD19619.1); similar to CMP/dCMP deaminase, zinc-binding; Bacterial bifunctional deaminase-reductase, C-terminal [Medicago truncatula] (GB:ABE89798.1); contains InterPro domain Conserved hypothetical protein CHP02464; (InterPro:IPR012816); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Riboflavin-specific deaminase, C-terminal; (InterPro:IPR011549); contains InterPro domain Bacterial bifunctional deaminase-reductase, C-terminal; (InterPro:IPR002734); contains InterPro domain Riboflavin biosynthesis protein RibD; (InterPro:IPR004794) -0.205141952578034 -2.21463510383536 0.0490756937031324 1 1.40936942125829 8.60195597629233 -0.205141952578034 0.0740224287000436
AT3G14710_at 0.995265784290842 0.79781748987158 1.03101757083317 1.14776959645285 1.02183687054298 1.27151706515098 0.658911877712308 0.912589863384611 0.52123337207495 0.619991898986545 0.668837920358697 1.04995496257140 0.983139832007472 0.657517945505933 0.690494923654605 0.937118675349363 1.04341753458207 1.25115182909917 1.19220454653612 0.171376319705794 0.174324061761587 0.178241219187072 0.193191329634166 0.186358416925265 0.178541022734961 0.178198103980206 0.178029686250221 0.199880002395397 0.187939657769684 0.176559176214477 0.171426586605537 0.188664009386783 0.176119335591769 0.188465520269996 0.173304932124701 0.180367133401462 0.173481629671943 0.180848622872233 3 3|0 +|/ 4942335 4942975 4942640 4941552 4943062 + gene protein_coding_gene FALSE TRUE AT3G14710.1 F-box family protein similar to F-box family protein (FBL13) [Arabidopsis thaliana] (TAIR:AT5G53840.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.204641642811022 2.21442824526617 0.0490933859471508 1 1.40905971101230 1.82359783582506 0.204641642811022 0.0732799324005675
AT1G23650_at 1.50655929092327 1.60358912000853 1.64961344859654 1.56208549028598 1.61269080282450 1.21961691232038 1.80085457779120 1.65973386569662 1.82819832732618 1.69633636123311 1.57119202512007 1.97219019601570 1.66342143587780 1.486702983994 1.61236394154111 1.74625640589349 1.44905520753878 2.20899622796357 2.45899572753557 0.191520623724694 0.192292698481659 0.191730187781955 0.196963618184779 0.191520623724694 0.204624688073413 0.191520623724694 0.195058547051500 0.212733575932588 0.206025545134366 0.197897996955144 0.196188147879443 0.193664325501671 0.198850849030235 0.200673280180092 0.191520623724694 0.196229142563472 0.196917590018766 0.193290011960622 1 1 - 8371027 8371062 8371045.545 8371009 8371095 - gene protein_coding_gene FALSE TRUE AT1G23650.1 unknown protein -0.206210192901638 -2.21407530306706 0.0491235865496478 1 1.40853130430029 3.43098415940155 -0.206210192901638 0.0757295731011415
AT1G20310_at 1.66973621737920 1.30307937970588 1.76769282150558 1.89657525113586 1.53879291932432 2.0549841902157 1.08273493288216 1.52941792240511 1.07909778293509 1.87724791076546 1.00072520524838 1.31266744887148 1.73750411411165 1.78622878476603 1.3625069346701 1.15745914730074 2.30148267821399 1.47931421109697 1.31494649915953 0.195962352521544 0.199137930146663 0.201731375064483 0.204922112998222 0.197900565047357 0.208635341355033 0.195962352521544 0.195962352521544 0.204088147764458 0.200691776907042 0.195962352521544 0.201063132910705 0.197384901255966 0.199799889154920 0.199023180864680 0.198727885634646 0.202171822636857 0.202801972711486 0.210632664945083 1 1 + 7032462 7032987 7032717.636 7032280 7033198 + gene protein_coding_gene FALSE TRUE AT1G20310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76070.1); similar to syringolide-induced protein 14-1-1 [Glycine max] (GB:BAB86891.1) 0.255870591850249 2.21377280379306 0.0491494849875724 1 1.40807843926962 3.07587676923003 0.255870591850249 0.135936287766306
AT1G24650_at 1.95111242040029 2.07542202801524 2.07746718166490 2.38941986137524 2.01868230728598 2.33751948791148 2.26018359362089 2.37871988540482 2.48568441776838 2.58151424094227 2.20743488857107 2.01872290162716 2.07112772503455 1.97533096297811 2.0784916935135 1.81079206010767 1.95021521451243 2.35652554567307 2.49244952288115 0.180178914121831 0.177702469533167 0.178162690615517 0.183792163208158 0.183924801961741 0.178357171692827 0.184291321023910 0.173760264253149 0.189014921478717 0.181466535055454 0.176920664086824 0.173760264253149 0.182687241820474 0.188417952127200 0.186253720108538 0.17735211149288 0.176855755065639 0.186837479165616 0.178160778562277 1 1 + 8736632 8737253 8736973.455 8734556 8737301 + gene protein_coding_gene FALSE TRUE AT1G24650.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G23750.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01820.1); similar to TMK1 (TRANSMEMBRANE KINASE 1) [Arabidopsis thaliana] (TAIR:AT1G66150.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to LRR receptor-like protein kinase [Nicotiana tabacum] (GB:AAF66615.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE85728.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.210944937747993 -2.21356615845514 0.049167184410295 1 1.40776908629711 4.47529727130958 -0.210944937747993 0.0827185640368135
AT1G16740_at 8.48623227153436 8.48715704772084 8.50346636619397 8.59730567092578 8.45086130654857 8.29175085187393 8.35020368775872 8.30950818074862 7.24036447989833 7.70958597782541 8.18271684930785 8.14728595795746 7.09578443423087 7.7593101475705 8.61041555148361 7.89179598372511 7.69443784569269 7.61454977828498 7.72335826562779 0.131721246898181 0.131040710200267 0.132067627665172 0.130247209684109 0.131817776123524 0.131266490179786 0.130181291256617 0.129077063955685 0.146675151298025 0.129264566695519 0.129058001491874 0.128250722665412 0.137888542906128 0.127897922291372 0.133213705157911 0.126276270215941 0.143445873007116 0.130820686223823 0.126680044653477 1 1|0 +|/ 5727850 5728919 5728643.2 5727683 5729073 + gene protein_coding_gene FALSE TRUE AT1G16740.1 ribosomal protein L20 family protein similar to Os01g0734100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044164.1); similar to 50S ribosomal protein L20 [Ehrlichia canis str. Jake] (GB:YP_302783.1); similar to Os05g0528200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056116.1); contains InterPro domain Ribosomal protein L20; (InterPro:IPR005813); contains InterPro domain Ribosomal protein L20, bacterial and organelle form; (InterPro:IPR005812) 0.184669123013025 2.2135533230158 0.0491682839822489 1 1.4077498716408 16.1507139944042 0.184669123013025 0.0327338426712065
AT3G19950_at 7.62447805377429 8.42493137419033 8.20931108277047 8.32196298263948 8.39073086694135 7.96032849414328 7.96270725017737 8.11459828168128 7.76268996540821 7.46508732411138 7.93696888495599 7.99395657699133 8.01300177577083 8.18609638771317 7.55316255979345 7.98540305130537 7.6198173042144 7.74870562655184 7.29607516137221 0.208259457409162 0.201721823495391 0.215069114301706 0.216219223965826 0.200783302524548 0.216504723186682 0.211100311449796 0.212457170409285 0.225273289693265 0.219565407664218 0.202822454709147 0.197334803016647 0.201581054107787 0.207149811815499 0.205641662959546 0.206924763041594 0.207330220559761 0.212294486315124 0.212143908238228 3 3 + 6943254 6943765 6943532.727 6942775 6945230 + gene protein_coding_gene FALSE TRUE AT3G19950.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G55530.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78566.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.280296410307971 2.21227524315541 0.0492778909381601 1 1.40583676206859 15.8199259672277 0.280296410307971 0.160645914265149
AT4G17770_at 7.83007782344942 8.1319656516843 8.71283184874528 8.4776400299332 8.9568276672355 8.88443566278944 9.39980364459764 9.57736508927896 8.76944715743592 9.0835813845561 9.28403770267525 9.5901679284516 9.43193233027559 9.37430613473025 9.04877634156808 9.00194980241449 9.11368229699015 9.26074216080885 8.77631221375348 0.142762059906975 0.128664730210161 0.124531044150415 0.131423337254974 0.122791333365330 0.122791333365330 0.122791333365330 0.122791333365330 0.137116381759891 0.129776549016844 0.129049159287690 0.122852722273385 0.123668503490171 0.122791333365330 0.130558886034971 0.122791333365330 0.126713427830458 0.129911159999140 0.123474224606176 4 4 + 9879523 9880065 9879807.636 9876251 9880267 + gene protein_coding_gene FALSE TRUE AT4G17770.1 ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G06410.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)] (GB:AAN52740.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.204941584290362 2.21210521377221 0.0492924901022228 1 1.40558227783111 17.8161915551248 0.204941584290362 0.0740746982975249
AT3G46980_at 7.00967737318811 7.48131080214622 6.94407216464623 7.06871346619637 7.65698790838669 6.88489481856665 7.76883460395563 8.18800858583633 7.10181731785054 7.0568721186347 6.89086977008876 6.7674858216574 6.94380937284457 7.30111086266545 7.1844567348811 6.97803758656256 6.30834615384428 6.85055158966977 6.89558607095766 0.202837242313706 0.196953259235529 0.19794394747483 0.203529150417981 0.195092015507899 0.208181372194593 0.206339751851195 0.195894575109577 0.207787180797486 0.203811219143175 0.195092015507899 0.195092015507899 0.203671547436799 0.211070706958962 0.204801340129379 0.199435045044727 0.219247898895067 0.201732881636284 0.206690254942597 3 3 - 17318437 17319262 17318773 17317988 17320923 - gene protein_coding_gene FALSE TRUE AT3G46980.1|AT3G46980.2|AT3G46980.3 transporter-related|carbohydrate transporter/ sugar porter similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G38060.1); similar to putative glutamate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAB84388.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.294149550560076 -2.21201363621461 0.0493003549027732 1 1.40544521558712 14.3359001265358 -0.294149550560076 0.173901262736660
AT2G47450_at 10.1763179444574 10.1005632191335 9.95594379632623 9.81200051556277 10.0572093290684 10.0716946291724 10.3193399646762 10.6729791550876 11.5217701249362 11.2006840553963 11.5964513100201 11.445898086964 11.3454936123019 11.3116443491332 11.4075455114532 11.3459583561587 10.8264606002796 11.0343872290713 11.3204402774665 0.102231571418308 0.103504234692214 0.0991384983354005 0.106399905261475 0.105928823890135 0.108069081186918 0.102507265804519 0.101838739166601 0.109868554323111 0.0995812119433898 0.0993125849196045 0.0974267673203526 0.0974267673203526 0.0998595755222454 0.098535860553439 0.0977929535046393 0.113921580149387 0.109417678756046 0.0974267673203526 2 2 + 19480377 19480928 19480664.364 19479751 19481384 + gene protein_coding_gene FALSE TRUE AT2G47450.1 CAO (CHAOS); chromatin binding A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. Downregulated in response to high light. Identical to Signal recognition particle 43 kDa protein, chloroplast precursor (CpSRP43) (Chromo protein SRP43) (CAO) [Arabidopsis Thaliana] (GB:O22265;GB:Q93V50;GB:Q940I7;GB:Q9SAU3); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G03430.1); similar to Probable signal recognition particle 43 kDa protein, chloroplast precursor (GB:Q8LSQ2); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Chromo; (InterPro:IPR000953) -0.200744803658226 -2.21193836802639 0.0493068199318413 1 1.40533256458508 21.4641867531135 -0.200744803658226 0.0674089450492195
AT4G35570_at 7.09357903263982 7.40647945725095 7.52683358659625 7.3270991664923 7.6604036640184 7.24296743211588 7.10935512424084 6.60757003357048 6.6630796255145 6.57205502609157 6.78918496733413 6.94914988291406 6.70178450405709 7.05308167674689 6.6346389977972 7.21595713237024 6.73244467636831 6.98885845279966 7.07011365725246 0.188888051370876 0.192857104746997 0.195701771172857 0.188898492816282 0.190303124785114 0.203177904935446 0.195518930242714 0.191424753223206 0.191146645250691 0.193950832365546 0.18918589153692 0.185382697769022 0.184434276512403 0.186382532909820 0.183892643279458 0.183038333572168 0.193109447117022 0.19697059030773 0.196996983881733 4 4|0 -|/ 16887519 16888144 16887834.571 16887170 16888361 - gene protein_coding_gene FALSE TRUE AT4G35570.1 HMGB5 (HIGH MOBILITY GROUP B 5); transcription factor Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha. similar to HMGB4 (HIGH MOBILITY GROUP B 4) [Arabidopsis thaliana] (TAIR:AT2G17560.3); similar to HMG1/2-like protein (SB11 protein) (GB:P26585); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.249900741862896 2.21112151521907 0.0493770342365626 1 1.40411009048746 14.0725627567413 0.249900741862896 0.129945708725712
AT1G35560_at 5.26123650276291 5.14102663309601 6.08239219249198 6.18870026203639 6.21273418372815 6.05600239191958 6.63443605813666 6.73398137532301 5.83112277749922 6.64307302341177 5.21707823024196 5.12285020001771 5.9622279526976 5.79771186168446 4.8102484303406 6.42530303113475 6.39202404900847 5.42313046333269 6.16174967362962 0.235575205896866 0.238552298368705 0.239923924332643 0.236601069652456 0.234282902451016 0.242415000057793 0.242407453041922 0.239327029953458 0.244020034591256 0.233406139249725 0.241203724640534 0.233406139249725 0.242398696175178 0.233406139249725 0.259644385158293 0.233825005699402 0.239682484048057 0.247523111362622 0.236784394392650 1 1 - 13116155 13116647 13116446.636 13115804 13117213 - gene protein_coding_gene FALSE TRUE AT1G35560.1 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.187936466162607 -2.21038560361991 0.0494403729334206 1 1.40300887279053 11.9667155010139 -0.187936466162607 0.0424693009915737
AT1G50450_at 8.1581667292884 7.68775957047533 7.73024771099581 7.23823104437356 8.1785309010904 7.57775224891481 8.80737009650509 8.26780835772438 8.3259786901218 8.48898836563346 8.32719696498912 8.46283987428779 7.81662326271363 8.3654847468713 8.56967057394181 8.70019502883435 8.3766631091571 7.96892962259305 8.3286667903333 0.146353848849179 0.149416074670618 0.155621112509765 0.147209545482765 0.141953696456700 0.152361456329647 0.147077240511270 0.144721406673113 0.149736895143895 0.151533640429003 0.138337747783463 0.141041802312460 0.147274199979946 0.150826407450402 0.1447507491089 0.141552622532561 0.158102964458827 0.138287601391663 0.136923742686548 1 1|0 -|/ 18691750 18692469 18692174.75 18691453 18694039 - gene protein_coding_gene FALSE TRUE AT1G50450.1 similar to saccharopine dehydrogenase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91413.2); similar to Os12g0137200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066107.1); contains InterPro domain Saccharopine dehydrogenase; (InterPro:IPR005097) -0.303423298130327 -2.21024254060717 0.0494526951472382 1 1.40279480687842 16.3080641723975 -0.303423298130327 0.18276941638241
AT3G58390_at 1.30238622755321 1.50441901862049 1.85740561642349 1.84457350960852 1.33272287718280 1.85843493695959 1.53760239979600 1.92660047473517 2.05415770880385 2.10404889167782 1.11847939887873 1.26433062641424 1.24902765953614 1.61315583768231 1.84844603215185 1.47736986601581 1.27085195908686 1.37596644329719 1.95098564222415 0.192112128695255 0.198056837579953 0.194760534266586 0.192627599895694 0.197041337710224 0.19179227765619 0.195445094701978 0.195065540586081 0.206607212024795 0.199433270582893 0.199862419855482 0.195746178118462 0.19179227765619 0.19179227765619 0.201781869048886 0.194794950799604 0.202733033681209 0.199784978355642 0.206856461380776 3 3 - 21611033 21611559 21611299.636 21611007 21612194 - gene protein_coding_gene FALSE TRUE AT3G58390.1 eukaryotic release factor 1 family protein / eRF1 family protein similar to PEL1 (PELOTA), translation release factor [Arabidopsis thaliana] (TAIR:AT4G27650.1); similar to putative pelota [Oryza sativa (japonica cultivar-group)] (GB:AAL87190.1); similar to OSJNBa0015K02.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE02893.2); similar to OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa (indica cultivar-group)] (GB:CAH67807.1); contains InterPro domain Probable translation factor pelota; (InterPro:IPR004405); contains InterPro domain eRF1 domain 2; (InterPro:IPR005141); contains InterPro domain eRF1 domain 3; (InterPro:IPR005142); contains InterPro domain eRF1 domain 1; (InterPro:IPR005140) -0.239330865742500 -2.21017994636052 0.0494580873991374 1 1.40270114817202 3.36481857866899 -0.239330865742500 0.118472897227245
AT1G35250_at 1.90614936931179 2.16392525198538 1.991390064273 2.07533648400360 1.81007047665135 2.02189785950105 2.16332946636724 2.23931147738710 3.01382142935502 2.11716385553129 2.05822085755438 2.18358173969842 2.38749347847452 2.41184020988791 2.12672903144411 1.83420933667582 2.88236348917570 1.92212785726928 2.29671098545714 0.242529659835644 0.245611956202888 0.247697278169229 0.250474910664454 0.25137649924095 0.242728135636796 0.246306537658551 0.244130613506227 0.244460561026294 0.253645001677254 0.244269468066862 0.240437002055549 0.253306004923980 0.244559432716853 0.240437002055549 0.24056689115336 0.240437002055549 0.252986737941412 0.255990566812796 1 1 - 12933033 12934409 12933857.818 12932919 12934457 - gene protein_coding_gene FALSE TRUE AT1G35250.1 thioesterase family protein similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G35290.1); similar to Thioesterase superfamily [Medicago truncatula] (GB:ABE93263.1); contains InterPro domain Thioesterase superfamily; (InterPro:IPR006683) -0.19679158845713 -2.20950156313970 0.0495165635608612 1 1.40168614891414 4.39728605958689 -0.19679158845713 0.0609731071561361
AT3G19970_at 3.14083952583084 3.24959180617834 3.27389650034272 2.86734408786104 1.68038993918311 1.58859385285187 2.02276265871059 1.94469630167058 2.55623747724469 2.07031068536380 1.83494598494458 2.28256555330882 1.62345714674434 1.81959674378084 1.64951364809046 2.62050857545729 2.32768902236112 1.68162309926513 1.83734052009182 0.217445590286997 0.218688132026597 0.214118298197114 0.214310915164040 0.211803606363617 0.211803606363617 0.215130341344928 0.215070796748675 0.214404691365736 0.212220417711823 0.215128567906789 0.213778087207907 0.217699274660095 0.212856701896811 0.213087845330558 0.211803606363617 0.211803606363617 0.225546221550850 0.214302656483547 3 3|0 +|/ 6960539 6961311 6960988.8 6958654 6961658 + gene protein_coding_gene FALSE TRUE AT3G19970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18245.1); similar to Os06g0730300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058655.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD62122.1); contains InterPro domain Protein of unknown function DUF829, eukaryotic; (InterPro:IPR008547) -0.205779283596966 -2.20925975974809 0.0495374228212811 1 1.40132438578867 4.53832285040073 -0.205779283596966 0.0757562085196516
AT1G72000_at 3.50620989524347 3.18620999714766 3.10922723212046 2.43854520604086 2.85914692693102 3.13026836065596 3.09306489784357 2.90946645866064 3.76042362554349 3.50122090309047 3.06358952723627 3.22492631094029 3.41999670397744 3.36433189874926 3.30348015156864 2.96726259452715 3.14524073555506 3.64971506214378 3.23024703181597 0.201421513628809 0.206513717432051 0.202711925793018 0.19965447580008 0.192729642854132 0.199736874497875 0.192112744834256 0.197674793193241 0.205315535651281 0.195175462634564 0.197031384597978 0.193219536881055 0.200624936420243 0.19952948565236 0.195548836653252 0.193633392409441 0.198553346064931 0.197421552363557 0.19627865427489 1 1|0 +|/ 27108226 27109201 27108501.667 27106939 27109325 + gene protein_coding_gene FALSE TRUE AT1G72000.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.259710097258084 -2.20873257526155 0.0495829297185066 1 1.40053570636535 6.4113249017824 -0.259710097258084 0.140529501241852
AT2G21270_at 8.82119670331967 8.82697660969003 9.2676685642503 9.25380108010975 9.40802077715 8.86146634291871 8.80710191203758 8.76148957884985 7.79128842856964 8.39676219500848 8.10888401710639 8.25354656119098 8.45778383527504 8.07766133958671 7.97090762859771 8.28282677567215 8.40322359597373 8.09296637005129 8.29391955629547 0.178950262095045 0.179365376335284 0.179299987737098 0.179755445828627 0.178497969768046 0.185238657640105 0.178497969768046 0.185221783103053 0.194645435828890 0.19270964262425 0.194546422978557 0.180768734299677 0.181354347630180 0.191622011122148 0.179403163765328 0.178497969768046 0.193594204651311 0.181709995442354 0.180965598079552 2 0|2 /|+ 9116432 9117037 9116674.333 9114629 9117342 + gene protein_coding_gene FALSE TRUE AT2G21270.1|AT2G21270.2|AT2G21270.3 ubiquitin fusion degradation UFD1 family protein similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT4G38930.2); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) 0.219433139470067 2.20760045581536 0.0496807900901765 1 1.39884223348081 17.1842810670689 0.219433139470067 0.0949481960308615
AT3G16770_at 12.4609576060804 12.5236078345211 12.5037112045167 12.3158690597259 13.0167548614698 12.9126675520513 11.7975804057423 11.809302561175 12.5746447882462 12.4799296996845 12.5692695104013 11.9850507422834 12.8456337657541 12.4482502344696 12.0159848546886 12.5503505921438 12.7772311371205 12.3649383821140 12.7799104324801 0.0824348755959335 0.0840688244107038 0.0817851519758568 0.0839782676616126 0.083943104470338 0.083005923914417 0.0852773382549646 0.0854929687012554 0.0848574516696767 0.0817851519758568 0.0826367246763734 0.0822388426943322 0.0817851519758568 0.083297369517004 0.0826278418173075 0.0817851519758568 0.0841024368804643 0.0822037923633596 0.0817851519758568 3 3 + 5706339 5706707 5706524.727 5705668 5707029 + gene protein_coding_gene FALSE TRUE AT3G16770.1 ATEBP/RAP2.3 (RELATED TO AP2 3); DNA binding / protein binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. Identical to AP2 domain transcription factor RAP2.3 (Related to AP2 protein 3) (Cadmium-induced protein AS30) [Arabidopsis Thaliana] (GB:P42736;GB:O23105); similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to AP2/EREBP transcription factor ERF-2 [Gossypium hirsutum] (GB:AAV51937.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.186241123231432 2.20739421255713 0.049698637622256 1 1.39853375572364 24.9455981985814 0.186241123231432 0.0387662917036617
AT3G01980_at 7.6294376208846 7.58728661505292 6.89170693689002 6.61538253165079 7.72576775805188 7.5629902916927 7.85808083681967 7.86321130138484 7.53007913328113 8.06408272274267 7.8026168179106 8.15875276427383 7.62503375172662 8.19802892064072 8.42818986808031 8.09144366721205 7.4307971688422 8.2645100176558 7.96235078840655 0.193744810211369 0.191007807547446 0.213944174344073 0.205979152740451 0.188104246788715 0.204362724456901 0.191850167180653 0.200925162616077 0.218388432665132 0.191101266510967 0.198768020370086 0.196281938556219 0.192852778419144 0.201866756204058 0.202473971840199 0.186675849965327 0.200392059523292 0.204287708959654 0.192440617249813 3 3|0 -|/ 327799 328480 328111.8 327462 329038 - gene protein_coding_gene FALSE TRUE AT3G01980.1|AT3G01980.2|AT3G01980.3|AT3G01980.4 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G55290.2); similar to alcohol dehydrogenase [Prunus mume] (GB:BAE48662.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G17845.1); similar to alcohol dehydrogenase [Prunus mume] (GB:BAE48662.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.19389573669909 -2.20703283296374 0.0497299248608137 1 1.39799326290475 15.3927792383132 -0.19389573669909 0.0559838415725046
AT1G11650_at 11.1817755124098 11.1630618816425 11.3735343489444 11.3960898296927 11.4738527486037 11.3104170288535 11.1999143641844 11.2076548709396 11.2432885921026 11.1793113748560 11.4600166871737 11.3475923812721 11.3727284781411 11.3786591291452 11.4134931813624 11.3707621310936 11.2841813293208 11.3226925241973 11.1875186339604 0.0625373630569359 0.0638357230108276 0.0691169633601361 0.0653498303011474 0.0645556160342358 0.0677522646330748 0.0655246767051395 0.0664997919834633 0.0714123627292176 0.0646344638830335 0.0625373630569359 0.0625373630569359 0.0641019439175035 0.0664571628374052 0.0673063124448604 0.0626807414036553 0.0700110769992643 0.0656253713149751 0.0640772542976656 1 1 + 3915786 3917868 3917115.273 3914774 3918176 + gene protein_coding_gene FALSE TRUE AT1G11650.1|AT1G11650.2 ATRBP45B; RNA binding similar to RNA-binding protein 45 (RBP45), putative [Arabidopsis thaliana] (TAIR:AT4G27000.1); similar to putative RNA Binding Protein 45 [Oryza sativa (japonica cultivar-group)] (GB:BAD05744.1); similar to Os08g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061165.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA-binding protein 45 (RBP45), putative [Arabidopsis thaliana] (TAIR:AT4G27000.1); similar to putative RNA Binding Protein 45 [Oryza sativa (japonica cultivar-group)] (GB:BAD05744.1); similar to Os08g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061165.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.182882347484884 2.20640191480415 0.0497845931317345 1 1.39704970575911 22.574356871752 0.182882347484884 0.0287656726153302
AT1G71990_at 3.16059585443741 3.58690345965956 2.82757036904938 3.10239947551856 3.24043841530410 2.74509152139082 3.26025357822151 3.82559466097953 3.99708838716358 4.12243873725521 3.91199753102798 4.40216598910137 3.90264531189646 4.29753809248664 4.31601167360582 4.20371920285601 3.58125738136992 3.96464926445411 4.31398163827051 0.203422520780198 0.20329671996291 0.216645459611279 0.210961875274538 0.210273468552328 0.203014912335293 0.210313632717056 0.210218055438157 0.204914648685058 0.203463125507331 0.214924822687081 0.208084216861078 0.203849371640309 0.206623451915509 0.211843174964985 0.204822568253213 0.220067523239172 0.203014912335293 0.208329354993167 1 1 + 27105195 27105672 27105468.182 27103946 27105924 + gene protein_coding_gene FALSE TRUE AT1G71990.1 FUT13 (fucosyltransferase 13); fucosyltransferase/ transferase, transferring glycosyl groups This gene encodes a Lewis-type alpha 1,4-fucosyltransferase Identical to Alpha-(1,4)-fucosyltransferase (EC 2.4.1.-) (FT4-M) (Galactoside 3(4)- L-fucosyltransferase) (FucTC) (AtFUT13) (FUT13) [Arabidopsis Thaliana] (GB:Q9C8W3;GB:Q8RYC1); similar to FUT11 (Fucosyltransferase 11), 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G19280.1); similar to alpha 1,4 fucosyltransferase [Populus alba x Populus tremula] (GB:CAI70374.1); contains InterPro domain Glycosyl transferase, family 10; (InterPro:IPR001503) -0.275733404027717 -2.20633836840519 0.0497901025310391 1 1.39695467497140 7.32710640519322 -0.275733404027717 0.156922348579632
AT2G46210_at 1.99591932089715 2.38474242499847 2.02963427081814 2.01690338296900 2.06667514706647 1.74979592677279 2.21272181297155 2.19461200870801 3.20573041561960 2.54369561702476 2.88729259298414 2.79563094744794 2.33532624449489 2.53273879913901 2.48140234016414 2.39420753618587 2.44273245754122 2.71212657479812 2.55425232820487 0.193295324951916 0.184289892798818 0.186201915479030 0.190053961730431 0.18790988142925 0.184767027397696 0.192725044867484 0.185593654008147 0.179544321691409 0.181129709310679 0.179544321691409 0.182141512850912 0.188421204585406 0.184529385812192 0.194391707852165 0.187439700584914 0.179986422017800 0.185964487715391 0.194395456729684 2 2 + 18985429 18985939 18985642.818 18984417 18986074 + gene protein_coding_gene FALSE TRUE AT2G46210.1 delta-8 sphingolipid desaturase, putative similar to delta-8 sphingolipid desaturase (SLD1) [Arabidopsis thaliana] (TAIR:AT3G61580.1); similar to Fatty acid desaturase, putative [Medicago truncatula] (GB:ABE90798.1); similar to delta-8 sphingolipid desaturase [Brassica napus] (GB:CAA11857.1); similar to delta-8 sphingolipid desaturase [Helianthus annuus] (GB:CAA60621.1); contains InterPro domain Fatty acid desaturase/sphingolipid desaturase; (InterPro:IPR012171); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Cytochrome b5; (InterPro:IPR001199); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257) -0.213228655171261 -2.20618022737552 0.0498038157052441 1 1.39671818594957 4.75166302367228 -0.213228655171261 0.0868875545650829
AT1G73660_at 6.438945934311 6.38127261142407 6.3323323222451 6.09380054347733 6.67110346054245 6.00127400523834 7.42754821549787 6.94358971911147 6.68774430362801 7.10029646479022 6.75983025852385 7.16863234900847 6.9714700284677 7.19726341900102 6.2956081602995 7.42542941494134 7.09372708962384 6.84836252770825 7.15948952510363 0.171373760551298 0.169935556300069 0.169527947007728 0.169911118882250 0.181840447845307 0.193198986848117 0.179163654496592 0.170867605398860 0.185071532818239 0.173647356635544 0.165906377183165 0.170008075108293 0.173374962550059 0.166628187069729 0.175734256921678 0.165576614457418 0.187228676877183 0.181320813908037 0.174743021066434 1 1 - 27695958 27696993 27696452 27695554 27700872 - gene protein_coding_gene FALSE TRUE AT1G73660.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G11850.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G18160.1); similar to putative CTR1-like kinase kinase kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD38153.1); similar to CTR1-like kinase kinase kinase [Brassica juncea] (GB:AAP86285.1); similar to hypothetical protein MtrDRAFT_AC139526g23v1 [Medicago truncatula] (GB:ABE80154.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) -0.267840614552083 -2.20558193565099 0.0498557291478558 1 1.39582353082570 13.5125086033746 -0.267840614552083 0.149179840182967
AT3G07310_at 10.7838972837707 10.7881159881127 10.6824621638519 10.7774386760659 11.0132146480313 10.9474259474657 11.3309606630795 11.4095323084468 10.7391077796674 11.0590890272282 10.7454098991304 10.6520296776282 11.0561457469835 10.8768181208940 10.5849973119612 10.8809542090996 10.9376598744059 10.6818349403667 11.0284991823073 0.0805378461497207 0.078576541649511 0.0826245495016326 0.0808134529051286 0.0775838868666512 0.0801603714527695 0.0776788357229893 0.0778429614478728 0.0837606372755469 0.0793852554957337 0.0789131039102428 0.0779985783261479 0.0790564312536996 0.079597667990286 0.0801690363297888 0.0786173663914887 0.0818676857763132 0.0795038530642374 0.0795236531586384 3 3 - 2328197 2328613 2328430.455 2327824 2329807 - gene protein_coding_gene FALSE TRUE AT3G07310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48590.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93505.2); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) -0.181620987920489 -2.20552677132970 0.0498605183288846 1 1.39574104479665 21.8387375693329 -0.181620987920489 0.0241905363640912
AT1G21200_at 4.33573916203516 4.71342247174521 4.75041714408605 5.03826458580239 5.0714411581478 4.98012031052757 4.72123357385569 4.6337663518537 3.45180162682884 3.42049025424725 3.77922226391205 3.28527819422598 3.87116345125882 4.18134659004528 3.31064128732727 3.65311489476232 3.87741013638854 3.19000352375751 3.864778699953 0.215300449445573 0.218203897869251 0.218715440267371 0.220128891372998 0.222918982360615 0.22072956541094 0.227773718207252 0.214716700977302 0.231881527658516 0.225231395272962 0.219049770286068 0.221365406658963 0.217476292281570 0.223703250263307 0.216494193196802 0.222486078476531 0.21885041708848 0.219019412510737 0.221458576527359 1 1 + 7422224 7422665 7422492.818 7421206 7423132 + gene protein_coding_gene FALSE TRUE AT1G21200.1 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76870.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95104.1); similar to Os11g0163500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065831.1); similar to Os12g0163500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066231.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.211759712734269 2.20479021941058 0.0499245054349364 1 1.39463975763621 8.3918236296164 0.211759712734269 0.0850420347827537
AT4G04960_at 4.41183535355179 4.85590944470619 4.27729715464025 4.90251738175908 4.22533668366375 3.69296092662481 3.38219175796987 4.06427549244898 4.83331204848732 4.9522871667956 3.85072849427737 4.13185861192953 3.8883496872407 4.63044302576117 3.46335294772563 4.21807959115134 4.21707314849091 4.46989313251466 4.75809225945679 0.235428270632683 0.239129832325262 0.239690041678082 0.23451729209854 0.237286143686381 0.247884156492346 0.237421861198085 0.236628468726929 0.243661045257143 0.234126956783568 0.232659898406827 0.237854735840785 0.240911028122854 0.242002921812650 0.250097573310764 0.236201787338778 0.242694541574145 0.242056474518344 0.233783488741187 4 4 + 2534574 2535109 2534801.182 2533054 2535384 + gene protein_coding_gene FALSE TRUE AT4G04960.1 lectin protein kinase, putative similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G28350.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.321599901928694 -2.20446176454323 0.0499530648704724 1 1.39414869218051 8.70485026848708 -0.321599901928694 0.200083247200176
AT1G80820_at 1.13182633211174 1.12503039953771 2.30262717727363 2.50022868688228 1.79640476678681 0.951537031162967 2.07286536830036 2.06225225866526 1.69558404940998 1.46002923515259 1.63178110281859 1.53833694218551 1.70553610211317 1.83412105110242 1.34143965111740 1.53049260952714 2.65748424333893 1.90363619465112 1.40523278702426 0.200865605332338 0.204446320796365 0.204110311811096 0.204458845182523 0.200865605332338 0.201452511018119 0.204346748333183 0.205549648655944 0.215439030342431 0.216316110114086 0.200865605332338 0.201357894671314 0.200865605332338 0.204099699425073 0.201459164504598 0.202804972160468 0.208508517344603 0.215914762357170 0.208408149267584 1 1|0 +|/ 30376302 30377254 30376519.3 30375464 30377562 + gene protein_coding_gene FALSE TRUE AT1G80820.1 CCR2 (CINNAMOYL COA REDUCTASE) Encodes an cinnamoyl CoA reductase isoform. Involved in lignin biosynthesis. similar to CCR1 (CINNAMOYL COA REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT1G15950.1); similar to cinnamoyl-CoA reductase [Populus trichocarpa] (GB:CAC07424.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.268638644558582 2.204027381505 0.0499908588309649 1 1.39349929185217 3.38691425807463 0.268638644558582 0.150169840531989
AT1G62050_at 3.40953865177137 3.78792204072553 3.71420796575567 3.98732475055327 3.78854448989999 4.23576924406254 4.41537842142856 4.79454095705368 3.45664641379513 3.45604886537718 3.8874573022075 4.13926018902914 3.98788986925679 3.58989670668171 4.25602029769748 4.06901964137848 3.8617700990761 4.25942829262998 3.10221740406283 0.179845371215990 0.18115055808085 0.180035538436967 0.180893733589570 0.185723630287258 0.187393328441016 0.18887465254813 0.184817339419721 0.184180661175168 0.179132728230652 0.188217474535543 0.182944543342723 0.182722298219068 0.181122847435680 0.186905161906254 0.178978802842912 0.185206389363795 0.181691003008126 0.184258098184647 1 1|0 -|/ 22940079 22941231 22940656.9 22939792 22942689 - gene protein_coding_gene FALSE TRUE AT1G62050.1 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G11740.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80109.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.248827583411342 2.20381239138322 0.0500095743837717 1 1.39317789791735 7.68897682890117 0.248827583411342 0.129680308312829
AT4G33770_at 3.57392268314899 3.49762258517804 3.92314798808134 3.72809763743657 4.07648677075441 3.28638868464824 3.86630895371233 3.95789231624378 3.75666793966632 4.06709193480234 3.39062834362453 3.10238008577035 3.19361377686672 2.78120983244155 3.59440752158966 3.87524436090104 3.14505322765811 2.99060140192171 3.60737794356253 0.251399930920853 0.248971219240487 0.248971219240487 0.248971219240487 0.252243497923360 0.255657013582505 0.254350455077948 0.248971219240487 0.260023928555080 0.259664618893988 0.255012020231142 0.248971219240487 0.254893222405747 0.248971219240487 0.248971219240487 0.252846568719695 0.259421766202219 0.255284375812534 0.251526341162768 4 4 - 16193837 16194359 16194143.667 16193424 16196430 - gene protein_coding_gene FALSE TRUE AT4G33770.1|AT4G33770.2 inositol 1,3,4-trisphosphate 5/6-kinase family protein similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G08170.2); similar to Putative inositol-tetrakisphosphate 1-kinase 3 (Inositol-triphosphate 5/6-kinase 3) (Inositol 1,3,4-trisphosphate 5/6-kinase 3) (Ins(1,3,4)P(3) 5/6-kinase 3) (AtItpk-3) (GB:O81893); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR008656) -0.260821659085499 -2.20325468680988 0.0500581555038472 1 1.39234421865896 7.27349424816235 -0.260821659085499 0.142337733684416
AT3G02980_at 1.73062023370981 1.75023293878631 1.50319447429098 1.59636983747776 1.35874385125200 1.21361640464362 1.72093131498598 1.63544240184810 1.82512865095852 1.7892415346723 1.8574067559165 1.96261138609962 2.04401897401581 1.62253343385831 1.66333383890682 1.39217493728849 1.62058055167753 1.39144739105778 1.69874705215442 0.214169843672737 0.216857047616515 0.224477274353199 0.216882914166418 0.216197224862643 0.218057073176448 0.218191818429889 0.220980012577415 0.219784296647486 0.217498902773453 0.214460602982478 0.213916431612920 0.21556912380047 0.213815383037356 0.213210090683035 0.212910326603345 0.215107305809620 0.211811692370666 0.213039765221696 3 3|0 -|/ 670958 671937 671420.1 670904 672222 - gene protein_coding_gene FALSE TRUE AT3G02980.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT5G16800.2); similar to GCN5-related N-acetyltransferase [Medicago truncatula] (GB:ABE94715.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.184050625537799 -2.20325294843810 0.0500583070022546 1 1.39234162017646 3.2962951760565 -0.184050625537799 0.0334835671815244
AT3G26000_at 8.24465750924398 8.5052194662729 8.53178783483378 8.3767260015305 8.81831684322642 8.1191941258004 8.59976297772449 8.68417901125621 8.65872319944919 8.62071547211767 8.27267790099579 8.1778472379016 8.53732320970305 8.03166363321139 7.40838996770482 8.27646284042958 8.47534572884813 7.80928108531885 8.45994116170464 0.176194859208683 0.170324766244435 0.179886613489801 0.181637922568921 0.178780119279706 0.179922073308154 0.170324766244435 0.170324766244435 0.182524749995613 0.174022042942947 0.172126183560343 0.174543258291156 0.170324766244435 0.182449872066297 0.176031033231117 0.174504170080633 0.191443933887529 0.177536753098389 0.173560711942448 3 3 - 9508297 9508977 9508598.545 9508015 9510495 - gene protein_coding_gene FALSE TRUE AT3G26000.1 F-box family protein similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G27290.1); similar to H0811E11.8 [Oryza sativa (indica cultivar-group)] (GB:CAC09492.2); contains domain no description (G3D.1.20.58.140); contains domain F-box domain (SSF81383); contains domain F-BOX/LEUCINE RICH REPEAT PROTEIN (PTHR23125); contains domain N7-RELATED PROTEIN (PTHR23125:SF23) -0.251558933509816 -2.20313008695871 0.0500690154409299 1 1.39215797102084 16.8366890853717 -0.251558933509816 0.132681739383405
AT4G09520_at 3.18865436876499 3.51549520624201 3.19236833773443 3.30850961197752 3.40487480129799 3.29317791761955 3.74846322644475 3.86833034211602 3.19069303665059 3.60538301786133 3.58937257880359 3.32964866174090 3.36463660990609 3.50613106961132 3.45287888617390 3.31223181209373 3.32314831192188 2.95377987349809 3.61977334858523 0.200107494390901 0.191786020631162 0.196989280496426 0.199984695773305 0.190582758549017 0.191080565192430 0.195905949625937 0.198709870160397 0.201251153402307 0.203805184570037 0.19655326961452 0.195627749001637 0.194919706866446 0.198188702557516 0.206443103110493 0.193061233807243 0.199994463216948 0.214553739328088 0.197212052723152 4 4 - 6025077 6025611 6025335.556 6024893 6027052 - gene protein_coding_gene FALSE TRUE AT4G09520.1 2,3-biphosphoglycerate-independent phosphoglycerate mutase family protein / phosphoglyceromutase family protein similar to 2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related [Arabidopsis thaliana] (TAIR:AT3G30841.1); similar to Metalloenzyme superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98832.1); contains InterPro domain Cofactor-independent phosphoglycerate mutase, archaeal; (InterPro:IPR004456); contains InterPro domain Metalloenzyme; (InterPro:IPR006124); contains InterPro domain Cofactor-independent phosphoglycerate mutase/phosphopentomutase; (InterPro:IPR011562) -0.199237222149133 -2.20206399904918 0.0501620261493989 1 1.39056455698299 6.8529483647752 -0.199237222149133 0.066385818925352
AT3G59700_at 5.0057701883232 5.55686881042924 5.63479190409369 5.76887651432983 5.44166645810588 5.43434522890711 3.72454866026845 3.94912108510934 4.07341582214598 3.83365034883569 3.51955019603692 2.64716299822156 3.73901833218731 3.60316547695857 2.52517406396799 3.17958388570516 4.25089848289184 3.55148532850228 3.89211886264822 0.28518747813111 0.299724653649002 0.299466425427523 0.290186826463022 0.285908836896470 0.290159265651514 0.280415881455534 0.280415881455534 0.285275897214253 0.280785919824094 0.280885920837573 0.281598910014511 0.286055951304457 0.283056044881437 0.281387880920139 0.280415881455534 0.287352957108302 0.282723853700823 0.280415881455534 3 3 + 22064594 22065062 22064917.727 22063110 22065252 + gene protein_coding_gene FALSE TRUE AT3G59700.1 ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE); kinase member of Receptor kinase-like protein family similar to receptor lectin kinase, putative [Arabidopsis thaliana] (TAIR:AT3G59750.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G43700.1); similar to receptor lectin kinase 3 (lecRK3) [Arabidopsis thaliana] (TAIR:AT3G59740.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.227393004004446 2.20205920751073 0.0501624445590022 1 1.39055739593261 8.71953186791363 0.227393004004446 0.105573947307462
AT3G29260_at 1.97988121558135 1.47471116934885 2.30061341073567 1.86961634398576 1.78197816571748 1.90167297825437 1.36488031783111 1.66324196224535 1.77415414692235 2.04012264227508 1.92889461700532 1.47276905543706 1.78910994013738 1.92656096824085 1.9922333758149 1.83782343609949 1.98947274660754 2.07389003828578 1.36254002630531 0.192677571327612 0.192458058315446 0.198685893280645 0.195276994015484 0.194606024811892 0.199412070316778 0.201176076971468 0.19573543351571 0.199385976900492 0.198943759172891 0.200235062944025 0.199768063094303 0.197177237896146 0.202406667776148 0.204590946229073 0.196412309333614 0.202916518410675 0.193960647795560 0.203537425781457 3 3 - 11217212 11217678 11217499.455 11217189 11218103 - gene protein_coding_gene FALSE TRUE AT3G29260.1 short-chain dehydrogenase/reductase (SDR) family protein similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G29250.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.246765112728809 2.2019981392756 0.0501677774882568 1 1.39046612866747 3.59304938414805 0.246765112728809 0.127674210138855
AT4G15730_at 2.06985176957482 2.11422554117806 2.25707437809067 2.58943691851170 2.19589652542159 2.34118169438026 1.89833124921508 2.05188988891928 1.71624632336721 1.93852794530455 1.9581155201989 1.84762642363983 1.91781591538009 2.06221422548291 1.86433525337932 2.03630241224930 2.10971218562285 1.91685807214629 1.97155136199268 0.20646645316345 0.204200955101149 0.221156438106733 0.209370771154331 0.22405101676506 0.207130488959843 0.205703987685774 0.221879855049337 0.214784275465704 0.204200955101149 0.204200955101149 0.204944744834352 0.204200955101149 0.209986461267575 0.204769339350912 0.213581830585023 0.208345523909080 0.214576720121422 0.217653291626044 4 0|4 /|- 8951892 8952429 8952121.5 8951531 8957630 - gene protein_coding_gene FALSE TRUE AT4G15730.1 zinc ion binding similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G62900.1); similar to Os05g0371100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055354.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV31237.1); similar to Os03g0347300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050098.1); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124) 0.200501695501769 2.20133982072211 0.0502253011304487 1 1.38948231469698 4.10951818461172 0.200501695501769 0.068596460165301
AT2G45590_at 7.86097902938098 8.27415782222044 7.18625417480363 7.45559459635844 7.55143210692257 7.64862195142717 7.23050924264343 7.82385739789497 7.74970949111105 7.47377875667796 7.49272912943807 7.93077703640274 7.57888000032818 7.6736207620207 7.58131480848176 7.4550648874719 7.15854259776819 7.8469164168986 8.0537831422146 0.169980168919273 0.170423134471427 0.178583425656797 0.172706187166871 0.174726074956723 0.190659532389565 0.178386552528523 0.169263845006387 0.191678135345846 0.173205930513958 0.173355979209329 0.171857374268611 0.177690560904017 0.177623418487108 0.170006388692285 0.170204707171493 0.187547711196885 0.174290143386805 0.174584865367376 2 2 + 18795393 18795773 18795577.182 18793732 18796062 + gene protein_coding_gene FALSE TRUE AT2G45590.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51770.1); similar to Os03g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049573.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94994.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.253129962070133 -2.20120750403831 0.0502368705185961 1 1.38928458748102 15.3033363742994 -0.253129962070133 0.134579225452994
AT1G04690_at 10.4767396985174 10.422244339295 10.7382310628051 10.6835669855729 10.6765944777337 10.4049745315187 10.4554430978152 10.5301819984112 10.2456079100706 10.0156803434331 10.2294279969015 10.2250303512971 10.334272101252 10.3429728520058 10.2386171099420 10.2340645829249 10.1941023699727 10.4623417532661 9.9065194049413 0.0862243987607064 0.0847284324431862 0.0877005131312522 0.089022182881991 0.0851948762867941 0.095051886050099 0.0866108431731104 0.087345161825052 0.0894155107428627 0.0875973604451026 0.08792526232376 0.0847284324431862 0.0869521225431492 0.0892278669522047 0.088113845562357 0.0851633547104122 0.0903197310571298 0.0860036846166095 0.0886484023900938 1 1 + 1314525 1315343 1314984.818 1313563 1315749 + gene protein_coding_gene FALSE TRUE AT1G04690.1 KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); potassium channel similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to K+ channel protein (GB:AAA87294.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain KCNAB voltage-gated K+ channel, beta subunit; (InterPro:IPR005399) 0.190678617222408 2.20097383319138 0.0502573082402586 1 1.38893541116797 20.7177667868805 0.190678617222408 0.0505489100388049
AT2G22000_at 2.45615501418693 2.75350724001702 2.35498925349170 2.67953674005894 2.37753660721683 2.11951022255179 2.83102678942534 2.83053940119818 2.56901265981298 3.62361908146351 2.83225089008752 3.04593691523091 2.95277232058905 2.95697043643571 3.11563954037964 2.82472307443054 3.07866796795774 2.71796064172555 2.90596375873912 0.168926414107026 0.174907167689123 0.168926414107026 0.172649013600317 0.168926414107026 0.171717371511619 0.177803286034988 0.176502799928745 0.190518593245989 0.177749720796249 0.178377448040353 0.171739696057198 0.173267748656787 0.173233504231555 0.181266290050396 0.168926414107026 0.172876712466180 0.176667094557064 0.177287685885451 2 2 + 9369536 9370053 9369753.182 9369392 9370283 + gene protein_coding_gene FALSE TRUE AT2G22000.1 PROPEP6 (Elicitor peptide 6 precursor) Identical to Elicitor peptide 6 precursor (PEP6) [Arabidopsis Thaliana] (GB:Q9SIZ9) -0.213581924347168 -2.19918106801201 0.0504143746038952 1 1.38625686379562 5.53709035353157 -0.213581924347168 0.0882964290740956
AT1G14710_at 5.7629293456704 5.89198317947978 5.24043576593411 5.56060719172465 5.93905563256542 5.55356824120332 6.00812779865915 5.49490100977185 5.12910575981432 5.80012516238413 6.02786460343802 7.22808958953404 5.20314038548737 5.59142363146627 7.32954386438755 6.52482166978269 5.7858416275353 5.68232460411267 5.46734148207473 0.21561062524475 0.216100952691691 0.225138845514320 0.214901425245124 0.215317857233541 0.217174249023605 0.218427137197702 0.213636863951079 0.216048053156290 0.211726878363666 0.211726878363666 0.212390309768486 0.214911744534715 0.223366677946610 0.220737299829477 0.215524308459191 0.218070235405439 0.217526654459152 0.214926393175295 1 1|0 -|/ 5062173 5062827 5062496 5061861 5065173 - gene protein_coding_gene FALSE TRUE AT1G14710.1|AT1G14710.2 hydroxyproline-rich glycoprotein family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02940.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94870.1); similar to Os03g0238800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049502.1) 0.245019243335922 2.19911645795087 0.0504200439154461 1 1.38616034385531 11.5000287114889 0.245019243335922 0.126124311877771
AT1G74630_at 0.940463507177832 0.893816463201182 1.66215939772246 1.65138957273799 1.30870122632547 1.41499763986504 1.53130948492553 1.39935613951348 1.76698865046523 1.24747975597245 1.28581461123978 1.36473648095216 1.90817823266470 1.48019084556216 1.67304480970417 1.33070945257372 1.77601447836653 1.47452246587739 1.45316893652371 0.20768909710228 0.200466190850080 0.209909523298086 0.213022993747283 0.206545682335367 0.210030227746881 0.205582225108485 0.200894069225087 0.202468829601192 0.205020782267715 0.203552145738653 0.203162398109915 0.218129710146575 0.207830572284168 0.201910529755687 0.202845953487683 0.205346246174559 0.213750493454895 0.204936633580673 1 1 + 28035514 28036089 28035805.818 28034182 28036113 + gene protein_coding_gene FALSE TRUE AT1G74630.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.182757267461008 2.19895917694339 0.0504338473306981 1 1.38592538808550 2.86320611381931 0.182757267461008 0.0304706702598208
AT2G05270_at 0.97394640396681 1.09806266779913 0.769062569808037 1.25876091682745 0.627633034081955 0.91543915175816 0.861116828832135 1.15025929117065 1.21111329173913 1.21204294754351 0.83986539594262 1.03300611565888 0.957030753910025 0.897494454426685 0.602327380937606 0.96940647240286 1.46134966404771 0.818530779663605 1.43090770061592 0.176114465745925 0.176517256619581 0.176937498724577 0.179071572592592 0.18053648858679 0.176114465745925 0.177494915566931 0.176114465745925 0.176114465745925 0.177050358080478 0.178874059906292 0.181778258182160 0.177321380346585 0.179095873317231 0.185436270755177 0.178756927555323 0.176114465745925 0.179448831911094 0.182561774521366 2 2 - 1920889 1920957 1920918.818 1920699 1921113 - gene protein_coding_gene FALSE TRUE AT2G05270.1 unknown protein -0.232716991332859 -2.19818030391319 0.0505022565883539 1 1.38476194085139 2.07281728657551 -0.232716991332859 0.112371662834939
AT1G51510_at 9.31210255747839 9.31444955077948 9.21552746469787 9.23627560809115 9.3971363568769 9.10334390926763 9.27276767492 9.4341021668707 8.69832590485167 8.71026991601495 9.06944814002256 9.20143079972726 9.19318828356705 9.21448265601926 9.31092026502833 8.88824861203184 9.04287535859851 8.93252949428804 8.46038937484009 0.121910519519318 0.118474994077273 0.120699119159260 0.126809121847102 0.124768802109617 0.120900554433909 0.117956751749171 0.123143195894271 0.132352186413132 0.123082085287038 0.119434234163219 0.114944635439412 0.118837946503983 0.115243720438419 0.123330105035129 0.117126011932839 0.126315637941688 0.118885717828227 0.130012785023874 1 1|0 -|/ 19107057 19108320 19107868.333 19106467 19108518 - gene protein_coding_gene FALSE TRUE AT1G51510.1 RNA-binding protein, putative similar to ATSC35 ("Arabidopsis thaliana arginine/serine-rich splicing factor 35, 35 kDa protein"), RNA binding [Arabidopsis thaliana] (TAIR:AT5G64200.2); similar to salt tolerance protein 4 [Beta vulgaris] (GB:CAC85245.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA binding motif protein 8; (InterPro:IPR008111); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.194180366573017 2.19757654588003 0.050555346273317 1 1.38386016441262 18.1505309193207 0.194180366573017 0.0581161813553574
AT2G46770_at 0.124504878163540 0.231659302737015 -0.00910364083719209 -0.0151576060139790 0.394531130218907 0.548346468109144 0.0805543503119865 -0.00090161832045782 0.686506591942496 -0.306198571074646 -0.141416107927445 0.309001596477997 0.230123759070883 0.204200289618892 0.0100166202922647 0.118938968334392 0.514185910620011 0.508329449803294 -0.465865955234032 0.244492978716507 0.238537304448538 0.243219133194135 0.239742426035241 0.235385031624997 0.235385031624997 0.235385031624997 0.235385031624997 0.257173633427054 0.242040141400247 0.244779186124900 0.235982649295743 0.240011884920655 0.250395119055446 0.25871585566402 0.240265330785037 0.243817746271203 0.245334139675784 0.236424588510972 2 2 - 19228029 19228423 19228218.625 19227797 19229986 - gene protein_coding_gene FALSE TRUE AT2G46770.1 NST1 (NAC SECONDARY WALL THICKENING PROMOTING FACTOR1); transcription factor NAC transcription factor NST1. NST1 and NST2 are redundant in regulating secondary wall thickening in anther walls. NST1 promoter was detected in various tissues in which lignified secondary walls develop. Identical to NAC domain-containing protein 43 (ANAC043) (NAC SECONDARY WALL THICKENING PROMOTING FACTOR 1) (Protein EMBRYO DEFECTIVE 2301) (EMB2301) [Arabidopsis Thaliana] (GB:Q84WP6;GB:O81033;GB:Q5M735); similar to NST2 (NAC SECONDARY WALL THICKENING PROMOTING FACTOR2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61910.1); similar to Os08g0115800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060852.1); similar to putative OsNAC7 protein [Oryza sativa (japonica cultivar-group)] (GB:BAA84803.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.184195865943940 2.19741890593661 0.0505692166502182 1 1.38362472566225 0.264630782711566 0.184195865943940 0.0353865916394064
AT3G16310_at 5.9271035060858 5.93837276670695 5.52103034978058 5.85048470432019 6.37514425309288 6.45855657080317 4.91822795961964 5.51395770610892 5.8003742265966 5.23533664189503 5.50860691003279 5.51350188761986 5.91561644254221 5.72796135577858 5.87428187360537 5.33113157249429 5.59465039443328 5.24803888965437 5.73386872349355 0.219394364447288 0.219295584886976 0.220553253669325 0.221463946680297 0.223901804193714 0.224480122664252 0.21678758168994 0.220620197996700 0.222666901966314 0.218552543901971 0.223117353793866 0.221015511788637 0.219089179689960 0.221750454204523 0.21678758168994 0.220857369748916 0.219549333501685 0.216931611994774 0.218986175482652 3 3|0 -|/ 5526627 5527627 5527025 5526420 5528606 - gene protein_coding_gene FALSE TRUE AT3G16310.1 mitotic phosphoprotein N' end (MPPN) family protein similar to MPPN [Medicago truncatula] (GB:ABE80936.1); contains InterPro domain MPPN; (InterPro:IPR007846) 0.238126143321952 2.19715326585762 0.0505925979335425 1 1.3832279986573 11.4024014919473 0.238126143321952 0.118705750592562
AT3G58860_at 1.9928936870041 2.22897286827974 1.75472983304990 1.82753685018116 2.12363797987958 2.11428592636049 2.26285882165975 2.26535256910326 2.28857489444962 2.34203403870145 1.94872666579551 2.73690425372124 2.02431155645511 1.79801849760241 2.33434361215726 2.03999668711835 2.27496133942567 2.28187990127355 2.33307498990472 0.189174625227194 0.191622117608752 0.185297581488059 0.191244547588516 0.185297581488059 0.187900437182654 0.187558916270057 0.194175972321201 0.192878128811583 0.207301262738556 0.185297581488059 0.193908449585754 0.192845729470882 0.191676395546622 0.193824141594450 0.185297581488059 0.20641452871377 0.211241971165674 0.191889405647328 3 3|0 -|/ 21774742 21775483 21775098.222 21774719 21776283 - gene protein_coding_gene FALSE TRUE AT3G58860.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G59000.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE93480.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.186903499651113 -2.19672832453491 0.0506300221669598 1 1.38259339134180 4.32184396121253 -0.186903499651113 0.0427861413520911
AT1G25520_at 8.08830337019879 8.88203086383367 8.03463681315493 8.6088804952529 8.55818019779352 8.06992410809575 8.02231411752484 8.49605919681272 7.4213816338966 7.21148137175138 6.81272222826304 6.57719202300349 6.89928431490299 6.54594404007187 5.99442015736055 7.35611545390423 6.63717798127674 6.42522124152866 7.13729091169798 0.238845640966170 0.231346905293502 0.237221136829131 0.228145691075139 0.233608562385288 0.241793590144857 0.245522880268112 0.229626542429943 0.245670562535234 0.236921330670506 0.243636443616822 0.232521527910308 0.237895164876099 0.231528414512546 0.233355420885328 0.228145691075139 0.257509645982497 0.249295603726785 0.231349472767779 1 1|0 +|/ 8962838 8964125 8963646.625 8962112 8964549 + gene protein_coding_gene FALSE TRUE AT1G25520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68650.1); similar to Os08g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061871.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_798718.2); contains InterPro domain Protein of unknown function UPF0016; (InterPro:IPR001727) -0.327489887963966 -2.19660632786710 0.0506407711966644 1 1.38241120886511 15.3014049715772 -0.327489887963966 0.206406233903384
AT3G50430_at 5.50131014963054 5.27699967361895 5.13056840276236 5.12789791676604 5.79185967641854 5.65758747687745 5.41629052920524 5.61738869187168 5.45216428236895 5.44938640266155 5.51515955615923 5.13966615009127 5.27573660347960 5.05780457331958 5.0510502341625 5.23905615461142 5.41766400415657 4.90970981936789 5.78321120271169 0.266775282689692 0.266300711075418 0.269696223226892 0.27867845835763 0.283828814005022 0.278938199582203 0.279188909349347 0.267795722694589 0.275956880186034 0.265746149190573 0.265746149190573 0.273027618895629 0.265923998454937 0.269573000333748 0.271914860820037 0.265746149190573 0.265746149190573 0.271421350840397 0.272341494693575 3 0|3 /|+ 18727431 18728238 18727908.25 18724678 18728390 + gene protein_coding_gene FALSE TRUE AT3G50430.1 similar to Os07g0120700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058781.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79736.1); contains domain FAMILY NOT NAMED (PTHR16057); contains domain gb def: Wins2 protein (Fragment) (PTHR16057:SF4) -0.193437650935531 -2.19535071043102 0.050751529361357 1 1.38053633564140 10.8211469060601 -0.193437650935531 0.0570796656598434
AT1G73380_at 4.91578322830259 5.74912910018782 5.11202455631959 5.13127334785943 5.80940711069111 6.1433906419476 3.97308586349996 4.02263200858605 4.35535035018741 3.95969941575728 3.73334333974723 3.61999626419032 3.7433239242268 4.11718198225772 3.36671002323759 3.89961878543305 4.12105521394608 3.59535033866529 4.0222056347589 0.210923870391583 0.211274578263421 0.210892844206320 0.206911589764333 0.219323038765822 0.216184172041514 0.212301028111792 0.213171600797961 0.206726393219844 0.206621808699479 0.210047737129535 0.206621808699479 0.208214734251915 0.206621808699479 0.209843352996982 0.206621808699479 0.208310004026021 0.218634280252623 0.212304113512885 1 1|0 +|/ 27593582 27594267 27593941.7 27592693 27594540 + gene protein_coding_gene FALSE TRUE AT1G73380.1|AT1G73380.2 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81139.1); contains InterPro domain Protein of unknown function DUF1308; (InterPro:IPR010733) 0.273010190561071 2.19494855737196 0.0507870522092807 1 1.37993591880596 9.05058620760637 0.273010190561071 0.155637217515610
AT2G37920_at 7.58975640482454 7.82066584711566 7.47261716092769 7.43349281402252 8.05977690234504 7.59923428302769 7.3065411865638 7.02171703266585 7.40762796211736 6.85880521545357 7.52288780352639 7.74285875597389 7.20724293995608 7.43463746081548 7.48657812438868 7.6229028193602 7.2900608786374 6.71824985476681 7.14523057071631 0.218064178339668 0.217626808831651 0.207212262896786 0.215282203279781 0.205905234696671 0.228044599405159 0.205905234696671 0.224553615498819 0.217902127784194 0.216263101469250 0.215064521517127 0.211265936568036 0.216306676275755 0.21433390745099 0.211531572371719 0.210137035593422 0.233569442244648 0.218571676869849 0.220884512039658 2 2 - 15876400 15876910 15876700.273 15875658 15877149 - gene protein_coding_gene FALSE TRUE AT2G37920.1 EMB1513 (EMBRYO DEFECTIVE 1513); copper ion transporter similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G07750.1); similar to Os02g0564300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047159.1); similar to Os02g0826100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048584.1) 0.223783126268653 2.19457598265256 0.0508199835369102 1 1.37937969441474 14.7956744934902 0.223783126268653 0.102098466067743
AT4G34640_at 8.16871967173102 8.2255497152077 8.01713132537412 7.81076693501027 8.74516957211366 8.18330241672607 8.87330257487093 8.7543349295753 8.63806387890636 8.47006856048423 8.96606893697263 8.42989491011915 8.37524806135997 8.68416364952037 8.42723085288022 8.3553922856836 7.99062412703026 8.43835206462992 8.67983968245581 0.146961654286721 0.142553671127288 0.1557233047899 0.154921127437767 0.144106444060564 0.157738323450791 0.14251564986049 0.144249984044312 0.152912173732494 0.150868650715757 0.148087987448766 0.143872892329174 0.141714384840455 0.149230041015403 0.142647558661789 0.143482673987039 0.178193638425116 0.150884604076215 0.152515304646366 4 4|0 +|/ 16540298 16541626 16540952.889 16538287 16541931 + gene protein_coding_gene FALSE TRUE AT4G34640.1 SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase Encodes squalene synthase, which converts two molecules of farnesyl diphosphate (FPP) into squalene via an intermediate: presqualene diphosphate (PSPP). It is generally thought to be one of the key enzymes of sterol biosynthesis, since it catalyzes the first pathway-specific reaction of the sterol branch of the isoprenoid pathway. Identical to Squalene synthetase (EC 2.5.1.21) (SQS) (SS) (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP farnesyltransferase) (SQS1) [Arabidopsis Thaliana] (GB:P53799); similar to SQS2 (SQUALENE SYNTHASE 2), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34650.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); similar to squalene synthase [Glycyrrhiza glabra] (GB:BAA13083.1); similar to squalene synthase [Panax noto (GB:ABA29019.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449) -0.227001503398914 -2.19431920928609 0.0508426912203431 1 1.37899637004400 16.8744659267295 -0.227001503398914 0.106067674917911
AT3G23650_at 1.54565141919955 1.72444076869819 2.22344952863009 1.98622181482646 1.85938540731129 2.08547136709531 1.89576294955927 1.82003564478197 1.76766125400843 2.15369048441996 2.16700797758665 1.56282984562115 1.83268795112530 1.99923916905424 1.93850201304351 1.7610259673338 2.23502550544078 1.71279011719362 1.46902319568652 0.184284873420821 0.184449584534863 0.182266307850517 0.184718492255866 0.181086390765532 0.188690764714838 0.183175862098079 0.186782888482075 0.182440475615257 0.181086390765532 0.181086390765532 0.185481931023087 0.189194189457301 0.18227369695802 0.184715324915729 0.188212721370173 0.192087905303064 0.181086390765532 0.181086390765532 3 3 - 8510697 8511156 8510962.364 8510696 8511203 - gene protein_coding_gene FALSE TRUE AT3G23650.1 protein kinase-related similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT2G16620.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE85728.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.198253128750475 2.19423765385815 0.0508499055793898 1 1.37887462298785 3.74151746901519 0.198253128750475 0.0659181787311257
AT3G23620_at 5.61690398342253 5.6813136186225 5.25670645286304 5.47854026495455 5.47534133051769 4.90710357156261 6.27543685932127 5.58851239577607 3.43674320545936 3.70372293360943 3.97565677806113 4.01716395912551 3.51422363648517 3.19900333100888 3.71090096672443 3.59720650690844 4.12264859050136 3.34769871978518 4.04311405376168 0.29125808981672 0.291036145910317 0.286129403172429 0.289923456189163 0.291150345597696 0.294568188913987 0.286129403172429 0.294494269238262 0.301736489754635 0.287046657190753 0.293721792548735 0.287523706802006 0.292272433990438 0.289695066641344 0.296209201387779 0.286129403172429 0.295062189283496 0.289793914910777 0.290483357442799 3 3 + 8481010 8481445 8481235.636 8480032 8482164 + gene protein_coding_gene FALSE TRUE AT3G23620.1 brix domain-containing protein Identical to Brix domain-containing protein 1 homolog [Arabidopsis Thaliana] (GB:Q9LUG5;GB:Q8LCK0); similar to PREDICTED: brix domain containing 1 [Macaca mulatta] (GB:XP_001087115.1); similar to Os01g0513800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043185.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.276708031256464 -2.19422128050167 0.0508513540774539 1 1.37885018079471 9.24169374730595 -0.276708031256464 0.159371808971707
AT3G19720_at 7.40224304614248 7.52221778980222 7.2288949547731 7.15116067578525 7.93988175335488 7.73410807319508 8.9452666825074 8.61555111235792 7.62845208299148 7.59142749725694 8.22218124565067 8.01422156133103 7.7513501049796 7.68441734758645 7.91557794049039 7.67702320421806 7.49841951303243 7.7068714410713 7.59332983193034 0.141324826859375 0.138759339460545 0.141569271495671 0.142707940697203 0.142803848464635 0.146447141820514 0.149591159236678 0.145775559964064 0.146987295362873 0.149290810521901 0.143446417756804 0.138911718911197 0.144563199470177 0.145192790128049 0.139730001587865 0.140265520178240 0.149493952043061 0.146494055784200 0.148452752512805 3 3 - 6850600 6855328 6853018.952 6850377 6855519 - gene protein_coding_gene FALSE TRUE AT3G19720.1|AT3G19720.2 ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5); GTP binding / GTPase Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP?ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G53140.1); similar to Vacuolar sorting protein VPS1, dynamin, and related proteins (ISS) [Ostreococcus tauri] (GB:CAL51904.1); similar to Os12g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066307.1); similar to hypothetical protein [Physcomitrella patens subsp. patens] (GB:BAE45852.1); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.201726818011675 -2.19397036436944 0.0508735567468084 1 1.37847561988039 15.5239959770837 -0.201726818011675 0.0716646342084382
AT1G77550_at 3.62079380803094 3.96329855966934 3.76780149283533 4.25363456194533 3.68846408178487 3.77113477188649 4.29718551246139 3.72787213807042 3.15217099839581 3.49665204768270 3.10281118974445 3.16231915768720 3.26490859372579 3.09969171688239 3.52840714993306 3.06965069446759 3.29159141276454 2.82659279890111 4.32275289946072 0.195356858340017 0.195868534523652 0.19546214095105 0.190674512989061 0.190674512989061 0.196416171309865 0.192422784879069 0.199388130047731 0.195258639908907 0.191132917158794 0.192621134409351 0.190674512989061 0.194844449422546 0.192591447004328 0.191255745560271 0.196435821112903 0.194987707806935 0.190674512989061 0.1957825044977 1 1|0 -|/ 29143384 29144184 29143649.2 29143196 29147903 - gene protein_coding_gene FALSE TRUE AT1G77550.1 protein binding / tubulin-tyrosine ligase similar to Tubulin-tyrosine ligase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94288.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO13468.1); similar to Os03g0179000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049155.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Tubulin-tyrosine ligase; (InterPro:IPR004344) -0.26048708501408 -2.19372906729818 0.0508949169891911 1 1.37811543115556 7.29899240139035 -0.26048708501408 0.143154541417962
AT2G43100_at 10.0135319916401 10.3304351532590 9.84074020384283 9.91810751658212 10.2300714580217 10.2839187328792 10.4843302998489 10.9959973299019 8.76242770781817 10.6689454813854 10.6955902326850 10.0220696187162 10.5195260483406 10.7276084440398 9.97347295059853 10.1875310233982 10.5655454908759 10.8875894189480 9.38897954414967 0.109648835898893 0.107882185356181 0.115033581513133 0.111701008406688 0.110133675951791 0.110889681298182 0.112971892392922 0.108535168855995 0.128489875701931 0.107733508202388 0.107733508202388 0.109526654745442 0.109306754413037 0.112624557731177 0.108876005596246 0.107733508202388 0.121059673377157 0.111201129911818 0.115660580914035 2 2 + 17927949 17928445 17928168.364 17927737 17928766 + gene protein_coding_gene FALSE TRUE AT2G43100.1 aconitase C-terminal domain-containing protein similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43090.1); similar to putative protein [Oryza sativa] (GB:CAC39061.1); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573) 0.226359096584093 2.19324593889229 0.0509377105041664 1 1.37739429485923 20.2892170346976 0.226359096584093 0.105423673097298
AT1G48120_at 4.07590773412639 4.44259475474338 4.1502058272838 4.8713302031709 4.57872238332 4.50658135274041 4.12163823236276 4.34849834427268 3.45557700177016 4.15834364264914 3.84442923156196 3.8461247878938 4.6601947717296 4.06136785569561 4.24049004089714 4.3674528680442 4.2271788237057 4.24377482526991 4.20569908889777 0.221943280166835 0.220491143363345 0.222464726688662 0.229612413279533 0.223244073645622 0.225269731336992 0.220364448979583 0.222662380100199 0.226413729975959 0.221701298477303 0.222384125745691 0.220364448979583 0.224706634761173 0.223151978374159 0.230450109512766 0.220364448979583 0.227188906856526 0.230836066831267 0.230439988158530 1 1 - 17777920 17778457 17778170.091 17777357 17783293 - gene protein_coding_gene FALSE TRUE AT1G48120.1 calcineurin-like phosphoesterase family protein similar to PP7 (protein phosphatase 7), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G63870.1); similar to Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase [Medicago truncatula] (GB:ABE88824.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.263026790706595 2.19225318383496 0.0510257524704148 1 1.3759126319455 8.45005980152192 0.263026790706595 0.145936452667980
AT2G42490_at 8.0952885265091 7.97461585667561 8.09909137552616 8.01467200544256 8.79037301326942 8.54903672421015 8.40856612620204 8.32539427819636 9.07767194051473 9.04135708805564 8.87160000753538 8.2612430763743 8.35844384151539 8.47557264955269 7.78770254951864 8.44570447954994 8.46839305247274 8.70742092958268 8.77460790576351 0.118526093851855 0.112555354367605 0.109754682295549 0.119655921323763 0.115195234655891 0.114258341612855 0.112931481124003 0.118269537335567 0.127125164447345 0.115195319806697 0.117435941985208 0.112086479255378 0.115020989545642 0.115167825948216 0.123620769879043 0.117483744929057 0.123284057326418 0.114078430997714 0.110157079722051 2 2|0 -|/ 17698698 17699676 17699089.5 17698485 17702927 - gene protein_coding_gene FALSE TRUE AT2G42490.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatula] (GB:ABE82492.1); similar to OSJNBa0022H21.18 [Oryza sativa (japonica cultivar-group)] (GB:CAE05498.2); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.190104244399473 -2.19188883195406 0.0510581012510614 1 1.37536890029959 16.9754075972743 -0.190104244399473 0.0509995599983012
AT2G22620_at 1.53326234425574 1.53814431754549 1.5559685261533 1.77898109185960 0.674806285016783 1.38637758221581 1.26537451657736 1.70206459811036 1.69816035769935 2.00889499464664 1.39028462469559 1.39452599755537 1.63194504191289 1.43511413479642 1.50124498192921 1.43519938899513 1.11367673982189 1.34900222107289 1.62921961703823 0.182035344222059 0.182095966666555 0.188753244447397 0.193543408645046 0.190898032804011 0.197543779138769 0.190226342630951 0.188838995861223 0.182035344222059 0.187081423961545 0.184757885066281 0.182035344222059 0.186536172568421 0.190000636090541 0.183508626024362 0.186706926954809 0.192149473409781 0.190028256376517 0.189104399201374 2 2|0 -|/ 9612170 9612736 9612400.556 9611881 9617675 - gene protein_coding_gene FALSE TRUE AT2G22620.1 lyase similar to lyase [Arabidopsis thaliana] (TAIR:AT4G38030.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G37950.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062464.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96404.1); contains InterPro domain Rhamnogalacturonate lyase; (InterPro:IPR010325) -0.266531127295757 -2.19179058752585 0.0510668271785809 1 1.37522229265649 3.02193863995455 -0.266531127295757 0.149548707653665
AT3G51950_at 8.07523419302976 8.27430633803298 8.39853906769883 8.23509330342847 8.7803814809489 8.59947390949393 8.74867938056675 8.67021188766513 8.51732568700361 8.93890418574431 9.40347036723005 9.4020890961322 9.4538716193929 9.22018313589848 9.1277738631202 9.3444316331863 9.15375359226476 9.0425256841144 9.37731576287082 0.138943257739941 0.135046212550003 0.135803557676306 0.1473750745761 0.132479986886991 0.151751368360609 0.138199444511929 0.131804602958365 0.159142683699060 0.141298167361422 0.139712565339444 0.136665452876181 0.143649728396757 0.146684617461381 0.135671508729953 0.134537732259660 0.140163042005527 0.141098910946453 0.141819145788478 3 3 - 19289227 19290050 19289628.091 19288756 19292324 - gene protein_coding_gene FALSE TRUE AT3G51950.1|AT3G51950.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G63450.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.192630576306685 2.19173465302043 0.0510717958360471 1 1.37513882398265 17.5792537380033 0.192630576306685 0.056137218804968
AT3G21100_at 0.885348625996915 1.00931211214260 0.370987246482477 0.804845616409962 0.956627746752354 0.941323858978638 1.01688990383105 0.982712949531598 1.02340970221429 1.08243234895007 0.638123784514717 1.05555252130034 1.2959559905738 1.00112957074529 0.603374520422403 0.661258348601524 0.576750058256537 0.634398840203273 0.93877181146986 0.207997289919435 0.208697426935204 0.210998169591311 0.213546687357803 0.205238323945794 0.209043267038337 0.207206841587231 0.208846915159528 0.211980590995428 0.213615806520098 0.207631797510469 0.208265113779584 0.224242788131964 0.208700856614956 0.205238323945794 0.208676514992533 0.207672897127716 0.221281288161749 0.210548024357152 3 3 + 7400722 7401347 7401070.6 7399157 7402442 + gene protein_coding_gene FALSE TRUE AT3G21100.1|AT3G21100.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G51520.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.205836556968592 -2.19136439002235 0.0511046979060748 1 1.37458631381138 1.78260062845168 -0.205836556968592 0.0783542718927646
AT4G04870_at 5.62217875350122 5.32893651786742 5.56251596265847 5.52530598629215 5.13507957724362 4.97383833106299 5.06843717748872 5.63693775631407 3.94984418686825 4.25439449313564 4.20131731237421 4.9452733274173 4.24237811768066 4.46951028314988 4.55234846112793 4.71043589940063 4.94670519394464 4.60271732408569 3.80047323343528 0.233031148512297 0.226062450604747 0.225999288932936 0.226519757856544 0.224766908796336 0.225436337061784 0.224327733330465 0.219889069477314 0.233059381095165 0.222378210629743 0.223280370236022 0.224247438768074 0.221290761046971 0.234916843170178 0.219904276828218 0.221662371038952 0.241334278460633 0.219889069477314 0.221778601245152 4 4|0 -|/ 2461960 2463524 2462850.5 2461672 2464141 - gene protein_coding_gene FALSE TRUE AT4G04870.1 CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase Cardiolipin synthase. similar to PGPS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE+SYNTHASE+1), CDP-alcohol phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39290.1); similar to Os01g0789100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044486.1); similar to CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase (ISS) [Ostreococcus tauri] (GB:CAL56910.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.233663757553005 2.19112356192146 0.0511261090740767 1 1.37422696401248 9.64935694665892 0.233663757553005 0.114342814745154
AT3G45900_at 7.38519611339357 7.60701409543454 7.34851446205053 7.32864541363722 8.2365643664665 7.45107387124958 8.50418435697704 8.44544049156915 8.12069409633807 8.47201585694 8.25616891575177 8.33193237196862 8.36697099050427 8.35950391114807 7.65901152318065 8.37092025736158 8.1311552132052 7.70746858704828 8.22049054102317 0.18084437276376 0.176624636929444 0.191987501313125 0.183427515577006 0.177710576508779 0.181611408946508 0.189892640716653 0.181586108319419 0.196423084860846 0.174691428495642 0.176406709028472 0.175373552894984 0.172188815991942 0.174297608408997 0.181480412196402 0.172188815991942 0.190646286811119 0.172188815991942 0.182857980383494 3 3 - 16885551 16886126 16885806.364 16885387 16887068 - gene protein_coding_gene FALSE TRUE AT3G45900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53020.1); similar to Os03g0853600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051930.1); similar to putative 200 kDa antigen p200 [Oryza sativa (japonica cultivar-group)] (GB:BAD88062.1); contains domain TRANSCRIPTION FACTOR X1-LIKE (PTHR21596:SF1); contains domain RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED (PTHR21596); contains domain Tubulin chaperone cofactor A (SSF46988) -0.258717298077653 -2.19104918071322 0.0511327237725205 1 1.37411597926495 15.9978082976997 -0.258717298077653 0.141656014867338
AT1G55390_at 0.43730296746347 0.566846814250705 0.54215196656624 0.319617633903839 0.344221058446684 0.654808594848906 0.869207192238072 0.653552890279325 1.01945042577164 0.762151592242453 0.937903375538135 0.62709243884708 1.03415439926548 0.740371968873548 0.477258866183078 0.356924671836897 0.235689694871170 0.512018549409246 0.802364833332728 0.187480356802631 0.187516282870858 0.195699128589496 0.188494001362295 0.192889244875219 0.194385742253802 0.195963263031544 0.187741116755347 0.189901577131281 0.195561556167323 0.1882781444442 0.191649983365245 0.187893174475502 0.185582063875426 0.189117218919810 0.186171665908952 0.206241927580254 0.194362456752344 0.193329341089104 1 1 - 20684692 20685195 20684964.727 20684542 20686709 - gene protein_coding_gene FALSE TRUE AT1G55390.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55380.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55430.1); similar to EDA11 (embryo sac development arrest 11) [Arabidopsis thaliana] (TAIR:AT1G55420.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.206336595397835 -2.19085613480127 0.0511498950984035 1 1.37382793976835 1.28671315444233 -0.206336595397835 0.079166509838441
AT3G46510_at 9.65783943659418 9.90446297162804 9.5671269802622 9.70559330437396 9.72335488760746 9.46063670684498 8.98134500471876 9.0512127990533 9.24820683633354 8.49022377265796 9.0505769848903 9.10745546997675 8.90599653083044 9.10269486163308 8.76263912863694 9.19223131017229 8.74434677416171 9.04843371422346 8.6813166600834 0.130139819178014 0.131884969355642 0.133929933076106 0.137078505039208 0.138898772344109 0.128665654239013 0.136054921583732 0.135664004455860 0.139784311011094 0.145207961978516 0.130600732720125 0.129101777004091 0.131549244531836 0.137384004845174 0.138880889128633 0.130875912663126 0.165028406851475 0.139298497442272 0.134194183651227 3 3 - 17135189 17135635 17135432.182 17134724 17137676 - gene protein_coding_gene FALSE TRUE AT3G46510.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G28830.1); similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) (GB:Q64HA9); similar to Spotted leaf protein 11, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99652.1); similar to Spotted leaf protein 11, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22055.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.199088670282119 2.19051626500253 0.0511801397015798 1 1.37332084772822 18.4043861463057 0.199088670282119 0.0678891576038277
AT4G24830_at 7.24178710457815 7.60782874656649 6.63980594003434 6.7643175356545 7.0391232053929 6.82570326987447 8.43350011559894 8.01848857844636 6.24615586516831 7.45811725165832 7.49376672558504 8.10535757289902 7.1281134332734 7.26766357642996 8.18483786889312 7.29785464177954 6.95991635292992 7.49782609356202 7.10074781353813 0.188270698744448 0.188505402267960 0.198583510948926 0.201428933863881 0.198205613624644 0.195610448047303 0.195402668760715 0.199120655382353 0.212918776194733 0.192866935862872 0.194140117910612 0.189809438725863 0.197307320142638 0.195686415744705 0.193694659580263 0.193935228516083 0.192230025676841 0.188270698744448 0.193592319748988 4 0|4 /|- 12793129 12793591 12793355.8 12792883 12795984 - gene protein_coding_gene FALSE TRUE AT4G24830.1 arginosuccinate synthase family Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066459.1); contains InterPro domain Argininosuccinate synthase; (InterPro:IPR001518) -0.225626796088843 -2.19050593367947 0.0511810593407898 1 1.37330543360435 14.5347813169969 -0.225626796088843 0.104876304353953
AT2G37050_at 5.91492410282826 6.64024224642966 5.5691571675895 5.1175463580782 5.46676383836267 6.05748588477977 6.80500366414653 6.75749989240051 6.46642198989025 6.5765516992996 6.52069861067914 7.14134794697446 7.09128595530199 7.10132145435293 7.13806596647944 7.28867362293013 6.9897626786707 6.29169244253813 6.648737183375 0.1981560686845 0.193201939538077 0.198848282826500 0.202821291563317 0.192379054136852 0.200811908239414 0.195069145267124 0.195981731769204 0.203859935781152 0.192889112986777 0.198633406017241 0.194072561489325 0.202339674043777 0.190565100718780 0.197030034627987 0.192424522014733 0.20391459575072 0.203701574533303 0.205483703480178 2 2 + 15579814 15580531 15580242.364 15576065 15580805 + gene protein_coding_gene FALSE TRUE AT2G37050.1|AT2G37050.2|AT2G37050.3 kinase| similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67720.1); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95578.2); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91110.1); similar to Os11g0102900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065520.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67720.1); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95578.2); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91110.1); similar to Os11g0102900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065520.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.297613351848062 -2.18989179469899 0.0512357550543486 1 1.37238919333469 12.7957077487915 -0.297613351848062 0.179947551584183
AT1G08110_at 9.90896383196455 10.1532431595971 10.3711349109683 10.3481503204148 10.6034985735718 10.6202285179933 10.4539357363929 10.4188958540036 10.2603437944663 10.0465660750315 10.5141672198972 10.1262493207081 10.4294377554299 10.3298553754227 10.0346002299982 10.3721249493752 10.1752044144227 10.2982294019919 10.1857268551303 0.0831307360843542 0.0769266946836204 0.0829298119244836 0.0802669539969038 0.0774762749994417 0.0817612223787779 0.0795747659102905 0.0801373050853183 0.0856302293991578 0.0774035777950829 0.0790511140493877 0.079180858051028 0.0769266946836204 0.0839636337221032 0.0835920208707996 0.0777792530583463 0.0817128717901214 0.081917307783551 0.0785350100269877 1 1|0 +|/ 2535731 2537335 2536595.167 2535325 2537928 + gene protein_coding_gene FALSE TRUE AT1G08110.1|AT1G08110.2|AT1G08110.3|AT1G08110.4 lactoylglutathione lyase, putative / glyoxalase I, putative|calmodulin binding / lactoylglutathione lyase Identical to Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D- lactoylglutathione methylglyoxal lyase) [Arabidopsis Thaliana] (GB:Q8H0V3;GB:Q9LMZ7); similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.2); similar to glyoxalase I [Arachis hypogaea] (GB:ABJ88950.2); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.186382388555247 2.18963733873440 0.0512584334481514 1 1.37200959242193 20.5843542755875 0.186382388555247 0.0429888007963828
AT1G55915_at 4.26959073209288 4.21635314438024 4.23068527399599 4.18460395407994 3.93145513116657 4.17919509023074 4.1497297949308 4.33117396787799 3.79121023826467 3.69238260526701 3.48386679360425 3.40351280648985 3.11124904096590 3.67596346252359 3.39650178825561 3.17773765347546 3.4697165869499 3.5054284279555 3.54411375720889 0.204390737404807 0.204923256280143 0.20105730329768 0.199459993672549 0.200800655142784 0.207228821923166 0.204118458279346 0.215617908014784 0.208865447982329 0.203532664202007 0.200984734242842 0.201017586152335 0.212097346682451 0.205564575629513 0.206214188898319 0.204316532063857 0.206460348936835 0.203067593297567 0.199459993672549 1 1|0 +|/ 20912427 20913065 20912727.7 20911212 20913303 + gene protein_coding_gene FALSE TRUE AT1G55915.1 zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35690.1); similar to Os06g0191200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057027.1); similar to hypothetical protein 4 [Zea mays] (GB:AAK73103.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain WLM; (InterPro:IPR013536) -0.191566088835755 -2.18896174666078 0.0513186920961092 1 1.37100180474609 7.72604802123157 -0.191566088835755 0.0545204053459479
AFFX-r2-Ec-bioC-5_at 10.1557436890495 10.3366866301744 10.6900248324141 10.4800511497798 9.98994793753837 10.2556978956844 10.2489462185096 10.2375878610491 0.355406671393689 1.03455652242979 0.743935183187257 0.924757786846942 0.958495855478341 1.41610500320053 1.26048205208472 1.18613108814378 1.06133483593360 0.424498214422778 0.739975843173198 0.264303723075696 0.267230457037887 0.268775319977469 0.265429537645622 0.265572264705118 0.267702383446716 0.26426208659027 0.267054546243558 0.259901911155494 0.272709614825018 0.258615534223615 0.264335924588862 0.268533271938848 0.265650324714317 0.290435550747904 0.253817240270696 0.275704041998752 0.256003936438658 0.253305984196897 NA NA NA NA NA FALSE FALSE 0.198088588785937 2.18874585255966 0.0513379627670684 1 1.37067977470528 11.1528093674805 0.198088588785937 0.0664812297410877
AT3G29750_at 1.43360171072376 1.22445389466510 1.49499949327143 1.61448692569654 1.56853190550184 1.50928907024074 1.21815720287577 1.47650891108151 1.13777603269496 1.58121331741977 1.42151768348784 1.62996518169026 1.45932920789916 1.62647962738495 1.74324459822228 1.75590962232182 1.43720715174878 1.92630984267809 1.60918142709416 0.213427050733173 0.210659753100744 0.21072007319951 0.21916645587805 0.226497161769526 0.215135631877832 0.216019728481245 0.215437518828826 0.216042250425167 0.216252213887861 0.210853034476014 0.211029457876001 0.219583645027866 0.214745561902598 0.213264706336646 0.215632003909285 0.216972071415434 0.212463761490675 0.224719226672944 3 3|0 -|/ 11581606 11582292 11581885.5 11581604 11583079 - gene protein_coding_gene FALSE TRUE AT3G29750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30770.1); similar to Os08g0344700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061599.1); similar to Chromo [Medicago truncatula] (GB:ABE93701.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) 0.195459095433642 2.18826974244218 0.051380484682494 1 1.36996964025795 2.97636311767314 0.195459095433642 0.0619804825319885
AT2G23910_at 1.42377241463367 1.37247143793551 1.26896662092028 1.47022727251128 1.02277387376585 0.937497037677601 1.0121289273823 1.28785415834216 1.23768578724836 1.60245220057754 0.759545809824133 1.14570214089563 1.11757010352869 1.03717144124990 0.862644619254656 0.77428735270284 1.55230171081117 1.44155844253171 1.29241867978434 0.210616535497399 0.206617534976349 0.207716847081752 0.215091700176003 0.207656073839825 0.216109714216693 0.208017927245960 0.206521221109497 0.207328682079646 0.207657861567201 0.206957237739880 0.20811478135704 0.204361212627911 0.211679284368988 0.204361212627911 0.215080867426192 0.210825130426315 0.204361212627911 0.210483569033393 2 2|0 +|/ 10185689 10186669 10186397.1 10184914 10187144 + gene protein_coding_gene FALSE TRUE AT2G23910.1 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT4G30470.1); similar to Ribosome-binding factor A [Medicago truncatula] (GB:ABE85146.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.195180859979114 -2.18793588466428 0.0514103219280351 1 1.3694717101527 2.45639476379771 -0.195180859979114 0.0615340583893602
AT3G48690_at 9.54799295168354 9.8549312438156 9.64998781148667 9.93585554579407 9.79901910720384 9.6227346586259 10.5477498801297 10.6518106471516 9.23999860331699 10.3677366047586 9.81027505831 9.6011965962024 10.0647829850224 10.0319784549680 9.38709149992358 10.0451256104393 10.3375049718119 9.90967261996284 10.1341342328922 0.0927314826359525 0.0944401153655428 0.097467704195311 0.0935839070113421 0.0961092352719946 0.100552772898093 0.100819281781600 0.0973843278909138 0.0993007198101142 0.0974869407736386 0.0925746611385166 0.0945957207176112 0.0940974604344022 0.0936263870971073 0.095998358218775 0.0919376508900666 0.0962083364901558 0.0947962660858625 0.0952785734242612 3 3 - 18048190 18048724 18048498.182 18048032 18049219 - gene protein_coding_gene FALSE TRUE AT3G48690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48700.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83378.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.207112452830016 -2.18750199655142 0.0514491237018349 1 1.36882462757522 19.8574652081877 -0.207112452830016 0.0807696982793724
AT3G57360_at 2.37872616070771 2.48799593473513 2.67642253398182 2.52158620615060 2.0273116508948 2.27144194756254 1.23181101328576 1.56238260250204 1.82637450399799 1.74071178141073 1.53110282229572 1.76667665877695 1.86426914042271 1.61789099250431 1.58739155568387 1.60753036934718 1.75997455243882 1.79772490562717 1.65188686214192 0.197788526859794 0.198365346650507 0.197567470321167 0.193817351467782 0.197810087981047 0.198101023087595 0.192596860049313 0.194413539585249 0.192446462225042 0.197917902005002 0.192909974190297 0.194535664565268 0.199600830548657 0.203280273913043 0.19337198475884 0.195453105882715 0.206905382993497 0.205386745533470 0.202868461468604 3 3|0 +|/ 21236771 21237574 21237318.7 21236549 21237662 + gene protein_coding_gene FALSE TRUE AT3G57360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G02370.1); similar to Os09g0504800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063597.1); contains domain FAMILY NOT NAMED (PTHR21027); contains domain SUBFAMILY NOT NAMED (PTHR21027:SF2) 0.20543703281333 2.18739890839471 0.0514583467831585 1 1.3686708923877 3.86032367647120 0.20543703281333 0.0783139467930269
AT1G10980_at 1.41197683677198 1.05618658808361 1.25274266731284 1.37729794168038 0.893155647596217 0.743903709043165 1.42725980956264 1.59475173419648 1.36509315066766 1.55515546540500 1.40275078258638 1.10942419829481 1.37390645050482 1.32284682351625 1.43322919681454 1.54024524679350 1.13727540129063 1.21614918922683 1.33645348073485 0.214844607263045 0.217472412689219 0.215922886080287 0.219955094475903 0.214605286333033 0.216731601152922 0.211848007162091 0.212635598276096 0.216182721221417 0.212138374225853 0.211503636753078 0.211503636753078 0.211503636753078 0.215777793978446 0.217961566461844 0.211503636753078 0.212151561133143 0.211503636753078 0.212984691651129 1 1|0 -|/ 3667562 3668545 3668078.2 3667248 3669902 - gene protein_coding_gene FALSE TRUE AT1G10980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61670.1); similar to 12246 (GB:AAD21413.1); contains InterPro domain Lung seven transmembrane receptor; (InterPro:IPR009637) -0.203845519276447 -2.18739207400564 0.0514589582973785 1 1.36866070035909 2.58759892181307 -0.203845519276447 0.0759136989322241
AT4G20430_at 3.31335594432301 3.64103713117553 2.45492472539725 2.64015805507777 2.42275835147657 2.91786898414934 2.81809639271538 2.91227638175742 2.5609428399934 2.52875580572502 3.38297886744043 4.14775425526991 3.26455486075398 3.42677904694789 4.41839075188825 3.15249009655493 3.33073839369464 3.51461728406772 2.59144818435411 0.200145395404715 0.193388745254356 0.198872593771181 0.195245856524102 0.192987317238398 0.192438926238768 0.192438926238768 0.194364843317864 0.200596494578314 0.198863089782003 0.193324444518780 0.192438926238768 0.192438926238768 0.201059391532992 0.201403367535158 0.194038731096037 0.197188953899254 0.195122272936213 0.206852185408624 4 4 - 11017687 11018271 11017994.364 11017667 11021116 - gene protein_coding_gene FALSE TRUE AT4G20430.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G30600.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G19170.1); similar to Os06g0700000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058476.1); similar to Os01g0769200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044371.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.228570867209385 2.1870754280175 0.0514872981366746 1 1.36818850207049 5.96014460639307 0.228570867209385 0.108858227862560
AT2G15520_at 2.36777218965825 2.06467892534433 2.28477313726714 2.31104731898422 1.84373784522812 2.40734961980696 1.74410923349413 1.86856992487331 1.75038209607782 1.98562338228268 2.27928784147712 2.08296120920157 1.88360021079437 1.7656244627447 2.63390742057578 2.35224820853924 2.05530182685769 2.21159423006085 1.94758572849747 0.200425899051769 0.201716022696955 0.202872113727135 0.195390242422026 0.207363370654352 0.203117383814115 0.203245469051829 0.198456221835965 0.214045802860164 0.200799903985483 0.195390242422026 0.204605046315749 0.202233553195559 0.202045786607275 0.195390242422026 0.201616716209593 0.195390242422026 0.197774268447948 0.203689738083104 2 2 - 6777867 6778341 6778151.455 6777866 6779317 - gene protein_coding_gene FALSE TRUE AT2G15520.1 zinc finger protein, putative similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT3G24680.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) 0.231989842987265 2.18695599268148 0.0514979914750432 1 1.36801039995678 4.13780281361576 0.231989842987265 0.112911312794258
AT4G25340_at 5.31420692071629 5.61394657917809 5.21221173169312 5.03184366922744 4.93863220144229 4.52100719986503 5.63627164684765 4.92742990116563 4.16979065210877 4.8135044748721 4.5739164330709 4.59053726065438 4.11014244572921 4.44902602316713 4.70100910585909 4.45578194591135 4.43802025945195 4.05992873773822 4.56882196287840 0.248884114569503 0.252217307516971 0.241398738292246 0.241398738292246 0.255491729637959 0.255046613887321 0.269884737909861 0.262410225506081 0.278199232896123 0.250587141001886 0.250157901007908 0.241398738292246 0.245080949549583 0.252788982774136 0.245277241032081 0.252177949304387 0.256388418328477 0.271417490233459 0.251369720363335 4 4|0 -|/ 12959696 12960783 12960365.375 12959452 12962709 - gene protein_coding_gene FALSE TRUE AT4G25340.1 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related similar to immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative [Arabidopsis thaliana] (TAIR:AT5G05420.1); similar to OSIGBa0140O07.15 [Oryza sativa (indica cultivar-group)] (GB:CAH67247.1); similar to putative immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase [Helianthus annuus] (GB:AAR23804.1); similar to Os04g0446500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052910.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.271058574129294 -2.18673374693449 0.0515178953213425 1 1.36767899531933 9.61927755113404 -0.271058574129294 0.154711620817438
AT3G05010_at 8.29494391074732 8.71348020769268 8.480907701652 8.5176900087465 9.07378923603755 8.47845962601237 8.29861185399954 8.2188549607193 7.70056179546435 7.39398583476466 7.87406230482849 7.88644478646669 7.91108336730171 7.9595641123624 7.46980970861388 8.0670643433655 7.22076706494778 7.53567286389642 7.43028672422107 0.174856672523403 0.171608041356541 0.182946175309164 0.170677118477674 0.174475853806411 0.183509117951989 0.183329232473607 0.171657971241553 0.183072622097813 0.174486386987009 0.174882725256639 0.166069252728337 0.164701752699050 0.17184177963144 0.1762536899646 0.170387532355104 0.191505437402480 0.171408779600352 0.179776118300728 3 3|0 +|/ 1390286 1391440 1390851.4 1389455 1391681 + gene protein_coding_gene FALSE TRUE AT3G05010.1 transmembrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27210.1); similar to putative expressed protein [Sorghum bicolor] (GB:AAM47585.1); similar to Os03g0756400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051317.1) 0.244259680322616 2.1863573555221 0.0515516208591556 1 1.36711775954551 16.1340105317623 0.244259680322616 0.126850848282184
AT4G40030_at 12.0477995358134 12.0676726887349 12.0265358159119 12.0495729114878 12.3891927049158 12.2670088934658 12.1707444094068 12.3877369420119 11.6836303883079 11.8808621164534 12.2178121430544 12.3186778820365 12.4353593944101 12.2029215549708 12.2086987449689 12.2794093598138 11.9956480128673 12.0629169150126 12.0073018402574 0.0694981219816231 0.0647808054760325 0.0649159769509465 0.0658068483032778 0.0660422478317713 0.0685950663275038 0.0650014880640816 0.0667793085786094 0.072399999664654 0.0660157257995492 0.0650912318691344 0.0647808054760325 0.066463423897242 0.0669882122834388 0.0661404765075799 0.0648577743708472 0.0666305607028704 0.0647808054760325 0.0652865862967868 4 4|0 -|/ 18555844 18556378 18556054.333 18555571 18556966 - gene protein_coding_gene FALSE TRUE AT4G40030.1|AT4G40030.2|AT4G40030.3 histone H3.2 Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to disease-resistent-related protein [Oryza sativa] (GB:AAL78367.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.186252453336219 2.1860658043342 0.0515777589921472 1 1.36668305047271 24.2120056290009 0.186252453336219 0.0434157880123682
AT2G44150_at 6.44841153566207 6.64834869187576 6.09692670196782 5.89332337453637 7.28734414240043 7.12261750622131 6.72609611329814 6.18957660620812 5.84859158211029 5.92980227251632 6.67539918094519 6.64098212695907 5.88077093943061 6.21359339423581 6.60665465045329 6.19677003000578 6.17353484742956 6.06803712299239 6.06212229770286 0.192193676183835 0.191066659804795 0.190380706262612 0.199414950169875 0.194976927118737 0.190946249987938 0.201357623698201 0.196633177591297 0.19617355500977 0.196959470383475 0.192130216637425 0.186202387822807 0.186202387822807 0.202927223765656 0.186202387822807 0.186202387822807 0.189606965743777 0.197861570916620 0.190623509127010 2 2|0 +|/ 18266989 18268030 18267481 18265686 18268518 + gene protein_coding_gene FALSE TRUE AT2G44150.1 SET domain-containing protein (ASHH3) Identical to Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43) (ASH1 homolog 3) (Protein SET DOMAIN GROUP 7) (ASHH3) [Arabidopsis Thaliana] (GB:Q945S8;GB:O80584;GB:Q94AQ1); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G59960.1); similar to SET domain protein 110 [Zea mays] (GB:AAN41254.1); similar to Os09g0307800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062827.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616) 0.228536881816884 2.18595005874412 0.0515881393156188 1 1.36651047658879 12.6784838360211 0.228536881816884 0.108958111654566
AT3G45680_at 2.66996128525848 2.548915333003 2.68255214691598 2.39814272214547 1.97384014075047 2.39293154464074 2.23371561917211 2.87819814758821 2.69146459310137 2.91628117011714 2.48705352621866 2.23780006362155 2.4570599037722 2.15979841847416 2.5871508292321 2.26603323002808 2.53802183189245 3.08166985389819 2.71870864450988 0.229449819121024 0.228560555718288 0.230523114264025 0.228999203972450 0.225710108262347 0.231407536839418 0.225710108262347 0.227485228486813 0.236180122392681 0.231801867351403 0.230243144689795 0.225710108262347 0.227652988758523 0.227627376593556 0.233602905902833 0.228450609152483 0.237893852745168 0.230409215569841 0.231198862057184 3 3 + 16783365 16783690 16783508.182 16781921 16784015 + gene protein_coding_gene FALSE TRUE AT3G45680.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45700.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45720.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45710.1); similar to Major Facilitator Superfamily protein [Solanum demissum] (GB:AAT39312.2); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.259746151538122 -2.18557808633368 0.0516215121285731 1 1.36595589499373 5.09843624729346 -0.259746151538122 0.143388731211809
AT1G54270_at 9.45208376893378 9.59943801052183 9.91252755676547 10.0309908848009 9.92000330265745 9.68302361876049 9.92909469156406 9.86559468059405 9.28094773290131 9.27226748823912 9.3438106775846 9.49848907410508 9.36179803548432 9.4310681573665 9.67033955507874 9.39620059963047 9.12026937023854 9.27985275601345 8.99037645715688 0.103587065542626 0.0995374807381086 0.109949611438436 0.102526195136086 0.0997469355724278 0.110375078978596 0.100231059456941 0.104362307211395 0.10075766667099 0.101330780113489 0.102341957705816 0.0991720410699436 0.0970282565119023 0.098544533707993 0.09985575757904 0.0970282565119023 0.100541309824471 0.101524808610797 0.0999693084610522 1 1 + 20265105 20265656 20265412.636 20263359 20265933 + gene protein_coding_gene FALSE TRUE AT1G54270.1 EIF4A-2 (eukaryotic translation initiation factor 4A-2); ATP-dependent helicase member of eIF4A - eukaryotic initiation factor 4A Identical to Eukaryotic initiation factor 4A-2 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (DEAD-box ATP-dependent RNA helicase 19) (TIF4A-2) [Arabidopsis Thaliana] (GB:P41377); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G72730.1); similar to EIF4A1 (eukaryotic translation initiation factor 4A-1), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G13920.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE81297.1); similar to Eukaryotic initiation factor 4A-2 (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (GB:P41379); similar to Eukaryotic initiation factor 4A-14 (ATP-dependent RNA helicase eIF4A-14) (eIF-4A-14) (GB:Q40467); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.190807427465635 2.18550824156924 0.051627780793334 1 1.36585176539974 19.0835574414682 0.190807427465635 0.0536018361885163
AT2G31090_at 8.69293393420919 8.9737820901954 8.56407353524692 9.10657173535643 9.13522311341848 8.82236595350632 7.63672631105716 7.83488055054461 8.97663105800543 8.57704411059453 8.78087258808608 8.8656728245528 8.6636864996953 9.04801403720676 8.19500376484398 8.82141087038105 8.74558623528757 8.62648946610492 9.02171884393888 0.13114366607028 0.129163237304372 0.161627408523919 0.129957947821172 0.129163237304372 0.133737771528697 0.137530138207469 0.132651407845548 0.149324962770288 0.129163237304372 0.140338925603740 0.134577354087054 0.139179858653109 0.141977933534612 0.147651976102027 0.131968368065560 0.132829090699156 0.144748724537100 0.130253595977996 2 2|0 +|/ 13263360 13263648 13263545.6 13263215 13263788 + gene protein_coding_gene FALSE TRUE AT2G31090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20562.1); similar to hypothetical protein MtrDRAFT_AC135231g3v1 [Medicago truncatula] (GB:ABE82887.1) 0.241177613901990 2.18492384776793 0.0516802594124422 1 1.36498055194385 17.3842230062499 0.241177613901990 0.123625083451773
AT1G73880_at 3.90758877598782 3.77861779556860 4.21088650770178 5.11004121202574 4.25264381492599 5.44360868379355 3.92571357771378 4.08068187425905 4.12303408565405 3.59456183243527 3.55147090470028 3.68726828636811 3.92606889877719 3.8757024655443 3.93734636851515 3.9415997770104 3.72361239814417 4.21338510802365 4.01936417465884 0.251069545219385 0.269349477877598 0.261325259939447 0.264355686758408 0.251069545219385 0.280562691223907 0.259941637527106 0.254820846104576 0.251069545219385 0.251069545219385 0.257760913427515 0.271038213394798 0.251069545219385 0.25276103150669 0.265600167437593 0.260110570201937 0.271864222214428 0.263331286970858 0.257451917822965 1 1 + 27789947 27790060 27789997.333 27788642 27790465 + gene protein_coding_gene FALSE TRUE AT1G73880.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G51210.1); similar to UDP-glycosyltransferase 89B2 [Stevia rebaudiana] (GB:AAR06921.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.387940646849401 2.18477309838219 0.0516938049750483 1 1.36475582738881 8.22341118364777 0.387940646849401 0.260590973303123
AT1G24350_at 5.23412850213116 5.58095081023847 5.79705369584442 5.54486515856465 6.93237714559206 5.71294695169027 5.99410642666304 5.76212163686715 4.55785076070075 4.94010257840742 5.60038074170102 4.91030612244955 5.15168277587721 5.14839447584661 4.78938326395465 5.29554593721400 5.49428360410422 5.12068306532209 5.03505582348843 0.208871767863795 0.198283051343314 0.201252794417299 0.196837799477203 0.206251733324227 0.202430843716194 0.192421351891021 0.192669662348726 0.215319642666011 0.195374510265303 0.210817483252792 0.192154856588802 0.194780943561173 0.203180257890007 0.197808512116694 0.194646208919471 0.227039753320237 0.215383874629566 0.204539817022346 1 1|0 -|/ 8639112 8640239 8639846.8 8638509 8640476 - gene protein_coding_gene FALSE TRUE AT1G24350.1|AT1G24350.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os08g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060903.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); similar to Os01g0901800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045113.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os08g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060903.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82772.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) 0.349240002362183 2.18472832949358 0.051697828328703 1 1.36468909066137 10.8364032338693 0.349240002362183 0.227269713406678
AT1G56270_at 1.08483366957069 1.02645111518944 1.11081358301339 1.38780009784060 1.45205402772198 1.15855006079161 1.76872210401458 1.29167496798043 1.48057597691172 1.58254181995117 1.05622574772810 0.68052605988259 1.79294274486142 1.19181375213392 1.17439753166075 0.924206500405557 1.61707376332105 1.55915179105670 2.00732216288010 0.192432273857112 0.201869983491237 0.197744798829714 0.194623782555126 0.19191176776578 0.192829136769034 0.190076860142005 0.194992506181017 0.188834123200532 0.206826131101086 0.193680463823666 0.193646392185859 0.194590087304632 0.194956589486907 0.198740260013471 0.191955418015904 0.192959711023039 0.197354509695913 0.200556661259553 1 1 - 21074818 21075259 21075051.727 21074682 21075315 - gene protein_coding_gene FALSE TRUE AT1G56270.1 unknown protein -0.228110219356644 -2.18469694170997 0.0517006493084413 1 1.36464230133898 2.7549568980798 -0.228110219356644 0.108604535226126
AT3G16780_at 6.06735731364322 6.56304198379296 5.93160810198856 5.42710744555892 5.43723313665852 5.60574403018084 6.30878333164442 6.74601849560661 5.80179199925936 5.39022605291598 5.80620266817601 6.52693986086242 5.8350363218528 5.72486650643516 6.99347275960584 5.4838051911758 5.54483933416455 5.61433278732993 5.7467969032635 0.173270291138922 0.174052246924811 0.176788667657413 0.176063732377668 0.174989119899242 0.180664440934255 0.178378492424966 0.177616975312358 0.179877241252868 0.178190375757599 0.173241722621363 0.172457398876443 0.172457398876443 0.179755744829483 0.179916712035444 0.172657551079417 0.175942175187015 0.172457398876443 0.176159385997109 3 3|0 +|/ 5709056 5710095 5709577.222 5708931 5710585 + gene protein_coding_gene FALSE TRUE AT3G16780.1 60S ribosomal protein L19 (RPL19B) Identical to 60S ribosomal protein L19-2 (RPL19B) [Arabidopsis Thaliana] (GB:Q9LUQ6); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to 60S ribosomal protein L19 [Capsicum annuum] (GB:AAR83877.1); contains InterPro domain Ribosomal protein L19e; (InterPro:IPR000196) -0.262980912843863 -2.18466065862758 0.0517039104365338 1 1.36458821493963 11.8045910201409 -0.262980912843863 0.146820816385014
AT2G27480_at 3.02243028449565 2.58737840997779 2.63588055976015 2.64365513424501 2.97192457130631 2.42887568305342 2.40150983815314 2.37100785724209 2.97178321848635 2.79087908856455 2.63158189931607 2.4928953708943 2.43172113467282 2.43396678667336 2.01181501066897 2.56236031928602 1.98194254790540 2.21509869167438 2.92670469555338 0.212819667928531 0.216581558746801 0.222708414236853 0.214812685271298 0.215192815574544 0.221565624802062 0.219059540286685 0.214432565603216 0.224326528501585 0.218868748705088 0.218849392820977 0.214819571784136 0.212550879977192 0.224672620765009 0.216141581271079 0.216099652645084 0.23403245479226 0.220277667728962 0.217951267786196 2 2|0 +|/ 11754122 11754926 11754561.1 11753798 11755129 + gene protein_coding_gene FALSE TRUE AT2G27480.1 calcium ion binding similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G04170.1); similar to fiber protein Fb1 [Gossypium barbadense] (GB:AAN77144.1); similar to Os08g0558100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062491.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.238390278887144 -2.18464878056602 0.0517049780808571 1 1.36457050863654 5.25364698611478 -0.238390278887144 0.120538883326307
AT2G32350_at 2.27279513621429 1.74779324050342 1.84708062580842 1.88331908809257 1.14645629637917 1.91416772895417 2.27868027204062 2.2816127234679 2.56270960510461 2.10529440282644 1.88536554204247 1.65489662149270 2.43073037857114 2.61059894655104 2.61110923718312 2.20986966503474 2.25019948515339 2.57240718962792 2.48722033162925 0.215326083265111 0.215326083265111 0.221186063796066 0.230942815939758 0.230176588903584 0.215326083265111 0.215729646326225 0.215326083265111 0.239452689383110 0.248056657351246 0.215833301346733 0.221853513742191 0.247260951284321 0.217516822820456 0.223368186201468 0.2209394518074 0.221835820333480 0.223859692121767 0.215326083265111 2 2 + 13742158 13742786 13742418.222 13742022 13742865 + gene protein_coding_gene FALSE TRUE AT2G32350.1 similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05230.1); similar to polyubiquitin homolog [Sordaria macrospora] (GB:CAE00783.1); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.277196027447171 -2.18436485458655 0.0517305046627666 1 1.36414727732431 4.25309909546282 -0.277196027447171 0.161073798155861
AT3G13640_at 0.680205438698203 0.687629852439624 0.75592793293009 0.790582742935966 0.501654249421507 0.345058019378631 1.38296551984494 1.25443180121452 0.824904964786201 1.30602793064675 0.75367485521486 1.08463903039393 0.955156857265991 0.574699643760252 1.15566384011203 0.989213582903827 1.4803448097877 1.35380579770371 0.889287309181216 0.204237601697910 0.202612566151227 0.212039233086704 0.204355370364231 0.201895685439687 0.210676357833012 0.204557563199915 0.208616419351986 0.208161183587882 0.201709023289058 0.204229758668543 0.200712460232462 0.200960282717971 0.201776557362573 0.201310214075345 0.203194356825432 0.201256410145584 0.207325525973430 0.202028457547535 3 3|0 -|/ 4458767 4459315 4459079.6 4458468 4461740 - gene protein_coding_gene FALSE TRUE AT3G13640.1 ATRLI1 (Arabidopsis thaliana RNase L inhibitor protein 1) member of RLI subfamily similar to ATRLI2 (Arabidopsis thaliana RNase L inhibitor protein 2) [Arabidopsis thaliana] (TAIR:AT4G19210.1); similar to RNase L inhibitor-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19067.1); similar to 68 kDa protein HP68 [Triticum aestivum] (GB:AAL26702.1); similar to PREDICTED: similar to CG5651-PA, isoform A [Tribolium castaneum] (GB:XP_968009.1); contains InterPro domain ABC transporter, ABCE; (InterPro:IPR013283); contains InterPro domain Possible metal-binding region in RNase L inhibitor, RLI; (InterPro:IPR007209); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.183171341472355 -2.18436431141419 0.0517305535086101 1 1.36414646766741 1.82487687978169 -0.183171341472355 0.0355918266396632
AT3G43320_at 2.71982003565484 2.60646122396499 2.45900701615724 2.66464694160297 2.15502888942187 2.55999192951337 2.57463663246103 2.71029633257957 2.97225108188248 2.60737837392071 2.47583039602643 2.52819333582224 2.69304437887912 2.35362445327593 2.78570720178304 2.42847214703328 3.01214806838944 2.79531417214797 2.9985036634059 0.198435347479504 0.196693770182576 0.194797552393658 0.196338506411633 0.194787976501984 0.193307011875198 0.193307011875198 0.196259376372203 0.195696940318844 0.203397846236328 0.195846962322735 0.197078700016165 0.195980371845797 0.195171066614279 0.195268338374467 0.196171146063176 0.198200693458719 0.193307011875198 0.19588785910969 3 3 - 15286457 15287001 15286718 15286449 15287981 - gene protein_coding_gene FALSE TRUE AT3G43320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37050.1); similar to putative DNA/RNA binding protein [Brassica napus] (GB:AAM82603.1); contains domain Retrovirus zinc finger-like domains (SSF57756) -0.209235399612298 -2.18366628878467 0.0517933609322323 1 1.36310604447379 5.30294586295584 -0.209235399612298 0.0843429120746455
AT1G69880_at 0.970348548477803 1.11031330779990 0.989409324765346 0.977386045132329 0.962934721084995 1.13805113023199 1.21559931625983 1.11410876788341 1.38918655662797 1.19516661781610 1.24800875836018 0.94979885844986 0.962607095656689 1.00346188967481 1.39087143858474 0.55077561356781 0.80451673054168 0.79525781421405 1.16255798449181 0.19997814195007 0.196455578124243 0.206849937703047 0.201253508604813 0.196455578124243 0.206656367580767 0.196455578124243 0.203588628906459 0.205597682892642 0.20739931441147 0.196455578124243 0.200438054633265 0.210640811125146 0.202591691887816 0.196455578124243 0.201107350880004 0.206180224230063 0.210584109745581 0.200080096229869 1 1|0 +|/ 26325204 26326433 26325764.8 26325142 26326656 + gene protein_coding_gene FALSE TRUE AT1G69880.1 ATH8 (thioredoxin H-type 8); thiol-disulfide exchange intermediate similar to ATH7 (thioredoxin H-type 7), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G59730.1); similar to thioredoxin [Glycine max] (GB:AAS88427.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.185727645616151 -2.18361753375875 0.0517977505801802 1 1.36303337776568 2.16583522580104 -0.185727645616151 0.0426363921902511
AT4G01310_at 11.0058457665919 10.9536251764034 10.3488569297594 10.2553811545275 10.8391032163964 10.6921868785761 10.9857040729925 11.052453759887 10.8665011395188 11.2740330825510 11.2533501799720 11.6136129353818 11.0634384268819 11.1761958305200 11.7846263369666 11.2583658519267 10.7165143292006 11.0052192226183 11.2589242018974 0.077480942309728 0.075633469694579 0.0771165900403689 0.0772956349147125 0.0796952079139395 0.07765491913646 0.0778210824837941 0.0777790111895764 0.0940026233482539 0.0781042214046549 0.077304332788944 0.075633469694579 0.0769971703560988 0.0826993164642412 0.0788149036602368 0.0782152412731771 0.092894640859825 0.0784312645236979 0.0759261853237505 4 4|0 -|/ 544221 545266 544634.7 543970 545547 - gene protein_coding_gene FALSE TRUE AT4G01310.1 ribosomal protein L5 family protein Identical to 50S ribosomal protein L5, chloroplast precursor (RPL5) [Arabidopsis Thaliana] (GB:O04603); similar to 50S ribosomal protein L5, chloroplast (GB:P82192); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132); contains InterPro domain Mitochondrial ribosomal protein L5; (InterPro:IPR003236) -0.182381283979718 -2.1831523065651 0.0518396550574394 1 1.36234000885883 21.9501787179781 -0.182381283979718 0.0335139654721008
AT2G28470_at 8.8466480556199 8.89662103673096 9.37104231836245 9.46240935716182 9.29610932984619 9.0847170327901 10.8543703069835 10.7207398945292 10.1993721131376 10.3249780070968 10.3889550731026 10.5409067327065 10.3382816861201 10.4325795383752 10.364611264828 10.3182790294964 10.2456689956909 10.4241428629514 10.1672792342831 0.0691381643214547 0.0675505041871557 0.070149991787957 0.0703944494328501 0.069626365185435 0.0674465005587998 0.0652237559520657 0.0661324895707991 0.0665830601472235 0.0662510906123399 0.0681018725247505 0.0668744015329813 0.0655633195411121 0.0667861786739025 0.0687936751658656 0.0649215998102089 0.0712061849771616 0.0664394180130452 0.0665615226448901 2 2|0 -|/ 12176146 12176829 12176421.222 12175917 12180647 - gene protein_coding_gene FALSE TRUE AT2G28470.1 BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G32810.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.1); similar to beta-galactosidase [Fragaria x ananassa] (GB:CAC44501.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91083.1); similar to beta-galactosidase [Raphanus sativus] (GB:BAD20774.2); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -0.187445142094683 -2.18283712631539 0.0518680627032368 1 1.36187029572228 19.8726927995437 -0.187445142094683 0.0468812159096902
AT4G02630_at 6.4937451713995 7.1417749945857 6.99683278984424 6.96119124362161 7.12329682006423 7.09435590152559 8.51124763497282 8.67531513314445 7.66508283948575 8.06170289271608 8.36184593915257 8.01986341479933 8.727141586215 8.45852922500986 7.79455450743545 8.15330550727024 8.04585489133706 7.91073811416139 8.24533032883683 0.195165433156240 0.171734338057733 0.188259952494783 0.186905295959113 0.171734338057733 0.180864557773162 0.178089796685437 0.177216156031309 0.174820959958020 0.17658932386014 0.181055879485833 0.175059484857858 0.180316089022156 0.172921683195537 0.183320059960068 0.171734338057733 0.182150192552512 0.171734338057733 0.175110154781412 4 4 + 1152612 1153101 1152797.545 1151613 1153356 + gene protein_coding_gene FALSE TRUE AT4G02630.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01540.2); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.234163875134322 -2.18274999570127 0.0518759185287758 1 1.3617404489067 15.4620622120708 -0.234163875134322 0.115955495696775
AT2G17800_at 7.44870086827491 7.31519616929218 7.25769052989822 6.62111465161492 7.27239037380806 7.14131067009662 7.75707230547451 7.94655914034276 8.02425913211194 7.66353652540789 7.9711011410587 8.33752516138818 7.52007331176857 7.88539638313828 8.09651107203752 8.06717148355644 7.57947943022633 7.58682900999897 7.74557937350516 0.23770677165448 0.214637051186312 0.224049610213673 0.211765332841582 0.208865325616269 0.228475320806067 0.215683124131722 0.222228257075774 0.221865417107019 0.22571362565908 0.213747976601345 0.214134861155883 0.211847370251806 0.216895145073948 0.211452590809588 0.214486688371199 0.227006304509669 0.215715458436923 0.222094838787917 2 2|0 +|/ 7747416 7748997 7748349.222 7746938 7749238 + gene protein_coding_gene FALSE TRUE AT2G17800.1|AT2G17800.2 ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3); GTP binding|ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway. Identical to Rac-like GTP-binding protein ARAC1 (GTPase protein ROP3) (ARAC1) [Arabidopsis Thaliana] (GB:Q38902); similar to ARAC6/AtROP7/RAC2 (rho-related protein from plants 7), GTP binding [Arabidopsis thaliana] (TAIR:AT4G35950.1); similar to Rac-like GTP-binding protein RHO1 (RHO1Bv) (GB:Q39435); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.237184850343337 -2.18272620889897 0.0518780633793477 1 1.36170500080723 15.1908222808444 -0.237184850343337 0.11941267165107
AT3G55500_at 6.03039357377707 6.3977380413105 5.70800576951535 6.25846982924297 5.40615710240004 5.99204211215442 4.4084773299813 4.95215177866111 3.94706802165073 3.63300835296396 4.58732249941779 5.63571071634011 5.12439244461565 3.87983751615541 4.72902050883017 2.99266020341462 4.34467631190786 4.43070076038905 5.22127534271785 0.239741983587369 0.230525042245712 0.233763197230255 0.229769338468605 0.228850436085274 0.235579839080531 0.227785179523416 0.227753340773962 0.234323975927496 0.240619296323131 0.227753340773962 0.231677586832462 0.227753340773962 0.235005784825277 0.231330717713342 0.23224025179945 0.236756878114095 0.23961081828372 0.234041474160506 3 3|0 -|/ 20586097 20586737 20586459.6 20585810 20587161 - gene protein_coding_gene FALSE TRUE AT3G55500.1 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A16 precursor (AtEXPA16) (Alpha-expansin-16) (At-EXP16) (AtEx16) (Ath-ExpAlpha-1.7) (EXPA16) [Arabidopsis Thaliana] (GB:Q9M2S9;GB:Q680J2); similar to ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) [Arabidopsis thaliana] (TAIR:AT2G39700.1); similar to ripening-related expansin [Cucumis melo] (GB:ABI94060.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.296200701709343 2.18239493284633 0.0519079432575812 1 1.36121133244586 10.0105081217527 0.296200701709343 0.179576698311325
AT1G04700_at 1.61176523720343 1.41700532246996 1.69886404580213 1.58755985464515 1.55886431852273 2.16827274553515 1.67263482030882 1.81205694296532 1.17222848539258 1.86424017790915 2.21367056699789 1.81132599926709 1.78272581616042 2.03964614688140 1.82199595104578 1.72750709695835 1.88827225516874 1.56282222923717 1.50759402680738 0.225787868102352 0.225670743793967 0.233160976330628 0.229346620184598 0.231133939143115 0.235424421662116 0.223371401306643 0.223968550951166 0.235885333844435 0.235677252191206 0.223371401306643 0.226290415698012 0.223371401306643 0.225686172181267 0.227251753891011 0.223371401306643 0.223794320681935 0.231540455183625 0.233933334023435 1 1 + 1319726 1320617 1320253.727 1316918 1320918 + gene protein_coding_gene FALSE TRUE AT1G04700.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G24720.1); similar to Octicosapeptide/Phox/Bem1p; Protein kinase [Medicago truncatula] (GB:ABE86676.1); similar to Os12g0594300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067178.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.233166427367155 2.18163949154423 0.0519761426716102 1 1.36008566443184 3.37621957147374 0.233166427367155 0.114939724640797
AT2G29260_at 2.17762982826028 1.81085304323145 1.9701237023804 1.98563806825320 1.49648250398045 1.61816457557608 2.01092087737083 1.62964805880096 2.28516707511179 2.06344962537169 1.97173337038580 2.02952722920173 1.75467807375188 1.71792988687956 1.93905116375021 1.85280358414845 2.26742199271728 1.93328011767045 2.32892161446854 0.211583029307718 0.209563727956765 0.210627858353114 0.215362398025461 0.212975761551897 0.207182153027630 0.208120625112053 0.227126266365350 0.220263704731573 0.216445603973376 0.216536523030192 0.225553440441246 0.209650439577877 0.216228931694743 0.212531267721767 0.210926086519271 0.213899661015346 0.228730636518181 0.212964233467324 2 2 + 12590095 12590943 12590644.091 12589596 12591178 + gene protein_coding_gene FALSE TRUE AT2G29260.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G06060.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.216101833519590 -2.18149604225491 0.051989102575551 1 1.35987192803207 3.91700722338029 -0.216101833519590 0.0939834043777012
AT3G49830_at 1.23250192889462 1.26384821109788 1.31569463919418 1.81836490796518 0.756879190471723 0.830070050949035 0.939915364257876 1.17082981021335 1.75023034190610 1.63847623677898 1.13381161994575 0.931414032529886 1.44309753246586 0.962861049030596 1.39277265142019 1.0925606646612 1.05531949376381 1.72348090883426 1.65665208263621 0.199737916486891 0.201296626436018 0.200367426071399 0.199911965583164 0.196576524636276 0.196213870819796 0.197867172390018 0.196213870819796 0.205744659117972 0.211463677102016 0.204017699350985 0.212974153847899 0.196213870819796 0.198405753126508 0.199345907205019 0.1965939845897 0.203302488658695 0.196213870819796 0.20935309436121 3 3 + 18494411 18494838 18494603.455 18493368 18494925 + gene protein_coding_gene FALSE TRUE AT3G49830.1 DNA helicase-related similar to DNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G67630.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF98543.1); similar to putative DNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD72453.1); similar to LOC398205 protein [Xenopus laevis] (GB:AAI23266.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain TIP49, C-terminal; (InterPro:IPR010339) -0.218196553914943 -2.18145660035385 0.0519926664880663 1 1.35981316124868 2.61536349514142 -0.218196553914943 0.0967154772212832
AT3G56080_at 7.6941503886543 7.65784053750451 8.36728288162889 8.0456356878551 8.7389685722234 7.76036113841575 9.42132223862983 9.17618680244704 8.6006999677172 8.60943476001277 7.96976710744666 8.16232374400496 8.7349578314056 8.33505209510138 7.94034880839811 8.39347133435803 8.51273724742506 8.1731683080512 8.64565729612823 0.168711895746774 0.164495428399757 0.160555249237837 0.171315640765632 0.160579373521455 0.169353840500293 0.170808580111323 0.166455134924654 0.1692071958126 0.168065480255318 0.163194623277859 0.171028472729335 0.159492571645342 0.166625097955527 0.165199102125964 0.163089517881971 0.164798533537956 0.168865630014817 0.161216945969950 3 3|0 -|/ 20821508 20822243 20821794.5 20821288 20824015 - gene protein_coding_gene FALSE TRUE AT3G56080.1 dehydration-responsive protein-related similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G40280.1); similar to Os05g0472200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055814.1); similar to Os01g0828300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044685.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93959.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.300090976770163 -2.18144064294730 0.0519941084421809 1 1.3597893854798 16.8058813563248 -0.300090976770163 0.183351331709934
AT1G08570_at 8.62818001266524 8.59011834527615 9.03623295487639 8.9889549273672 9.23381258990942 8.97774026888368 8.89549848655315 9.08240307776021 7.82753583099466 8.1686068829253 7.8041596544202 7.45487258277883 8.52965840554462 8.08967498296603 7.12741351009723 8.73702715850469 9.02183721072877 8.10538961469019 7.96124832618706 0.168812636981099 0.156552861447505 0.161436016769517 0.161213734557449 0.160711325937909 0.162540791458637 0.158856993780927 0.161613824345359 0.171295858484108 0.159646416964368 0.156552861447505 0.165768102706879 0.158821003950014 0.160128434563079 0.165574319837573 0.163131512149302 0.166383114710665 0.162417683986793 0.167013511930521 1 1|0 +|/ 2713639 2714262 2714019.111 2712895 2714737 + gene protein_coding_gene FALSE TRUE AT1G08570.1|AT1G08570.2 thioredoxin family protein Identical to Thioredoxin-like 1 [Arabidopsis Thaliana] (GB:O64654); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G33270.1); similar to thioredoxin (GB:AAA33400.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.191546165646399 2.18101121692170 0.0520329268546027 1 1.35914958290165 16.9763931595791 0.191546165646399 0.0558594780715366
AT2G01670_at 10.2210106324764 10.556190880584 10.5584770175373 10.7297659684435 11.0766820302424 10.7393923189670 10.2509567190167 9.99386715393791 9.85976259463534 9.70861715586686 9.69745767986183 9.96349337728218 9.77358529464508 9.8114706820507 9.81615525611593 9.99313747863117 9.38150140989693 9.7111954710503 9.98350724246758 0.108932046525200 0.109810071154834 0.111154915515246 0.111793417375064 0.110576584674548 0.114808190373789 0.112546794899029 0.108742122022660 0.125531562814407 0.111002330688299 0.110062438992049 0.109464321600532 0.111246890104710 0.112081882275421 0.113501984619096 0.108342104672166 0.112520872332408 0.112828516525568 0.109330202355859 2 2|0 -|/ 296942 297780 297441.429 296509 298093 - gene protein_coding_gene FALSE TRUE AT2G01670.1 ATNUDT17 (Arabidopsis thaliana Nudix hydrolase homolog 17); hydrolase Identical to Nudix hydrolase 17, mitochondrial precursor (EC 3.6.1.-) (AtNUDT17) (NUDT17) [Arabidopsis Thaliana] (GB:Q9ZU95;GB:Q8L979); similar to ATNUDT18 (Arabidopsis thaliana Nudix hydrolase homolog 18), hydrolase [Arabidopsis thaliana] (TAIR:AT1G14860.1); similar to MutT-like protein [Cucumis sativus] (GB:AAP57672.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.219221785414486 2.18068801028836 0.0520621616788242 1 1.35866806421647 20.3253571295748 0.219221785414486 0.0981305547542551
AT2G38910_at 1.35677391505446 1.16778113490829 1.7603456691358 1.66942574482664 1.17000228186859 1.61316961347882 0.99670023480365 1.06699597324895 1.07397591748882 1.5879579214333 1.24861953649585 1.33153703648016 1.64736572246888 0.86012343522641 0.856749701727163 1.12467358591349 1.05329725075680 1.36362567891121 0.854464661860838 0.189170080097703 0.180922493007954 0.186352041951041 0.184187050480762 0.181797689276580 0.179844080230222 0.187499614868682 0.186397030318883 0.190418424488066 0.181515591040471 0.179166848068547 0.185874625648926 0.198333202303599 0.185348078961684 0.183039247355483 0.180808565245147 0.192060980382502 0.184033654789264 0.184989054005009 2 0|2 /|- 16252501 16253120 16252825.9 16252292 16254561 - gene protein_coding_gene FALSE TRUE AT2G38910.1 CPK20 (calcium-dependent protein kinase 20); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G10660.1); similar to CPK1 (calcium-dependent protein kinase isoform AK1), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G04870.1); similar to calcium-dependent protein kinase 3 [Nicotiana tabacum] (GB:CAC82999.1); similar to calcium-dependent protein kinase 2 [Nicotiana tabacum] (GB:CAC82998.1); similar to calcium dependent protein kinase [Solanum tuberosum] (GB:BAB63463.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.209894586363402 2.18039009747024 0.0520891224860801 1 1.35822424956573 2.52909023446156 0.209894586363402 0.085714217505177
AT3G61230_at 1.30820865080628 1.57896531817708 1.43477450055812 1.37775959093523 0.896584118029272 1.02740341007009 1.11014736652074 1.02460378167594 1.89563209889245 1.65006732466053 1.28107911591049 1.03484876987448 1.30147473681966 1.41767362827462 0.968037381762214 0.935169597262571 1.16221959574328 1.5270729893151 0.996687920065083 0.24352564400275 0.242498072184064 0.244688150814274 0.256558333291862 0.245182528802565 0.246576313554854 0.245154375701006 0.247460708396587 0.237218077637248 0.241405068900764 0.241019850087758 0.239594624270702 0.250032312831872 0.233280731492443 0.241175217978505 0.239712103168739 0.233484497744126 0.235777049687921 0.242744479731453 3 3|0 -|/ 22675663 22676372 22675892.111 22675400 22676572 - gene protein_coding_gene FALSE TRUE AT3G61230.1 LIM domain-containing protein similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45800.1); similar to LIM domain protein PLIM2a [Populus tremula x Populus alba] (GB:ABK58466.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) -0.191016506032941 -2.17996287276161 0.0521278091214096 1 1.35758782792928 2.57859388780142 -0.191016506032941 0.0549952542132636
AT4G22490_at 1.86427794001283 1.76581426531138 0.790246881206871 1.44557927895396 0.708108212425078 0.737306842915318 1.33982203579391 1.33941373059420 1.45096687764253 1.30054377591878 1.33640868290895 1.36152390645424 1.34101681356014 1.57530236960552 1.63593204629075 1.46625770469004 1.68361268969858 1.27449974328566 1.05235762729230 0.183443763839231 0.191096984120767 0.192460643340034 0.182280537729556 0.182408814325216 0.183511738821365 0.183132759548028 0.191645644044965 0.199643755894877 0.189244972257740 0.186627710033830 0.185310267641682 0.180945938046287 0.191245007844795 0.183965545036269 0.190076812181721 0.188739754214524 0.181001716270667 0.184189075141180 4 4 - 11850027 11850239 11850138 11849713 11850343 - gene protein_coding_gene FALSE TRUE AT4G22490.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12470.1); similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to Os04g0554500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053511.1); similar to Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor [Medicago truncatula] (GB:ABE81783.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.232829269054456 -2.1796708734812 0.0521542663970147 1 1.35715287058948 2.61245881749150 -0.232829269054456 0.114792569892230
AT3G30160_at 2.76355666706563 3.02829277550791 2.85829819747758 3.06071633982274 2.64088595639498 2.67468754685301 2.94417215000081 3.11120345951959 3.5817630587661 3.69914848322383 3.1049662377855 3.5657735050281 3.13617324736865 3.37174857701366 3.26421180676862 3.40051720462847 3.39684748662976 3.88664229617398 3.60962052573078 0.340623421952498 0.327579374907841 0.338468171041217 0.339326123193035 0.342560955587898 0.337512722269216 0.33632771300391 0.329325140343012 0.334541535399117 0.327876620837122 0.332585866072058 0.332045097543397 0.326921890700314 0.330204966259432 0.335775951410405 0.336468127585085 0.326921890700314 0.333012868327156 0.326921890700314 3 3|0 -|/ 11787484 11787828 11787697.286 11787469 11787856 - gene protein_coding_gene FALSE TRUE AT3G30160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35320.1) -0.196238281809361 -2.17928533837926 0.0521892183141497 1 1.35657861335423 6.39574533712103 -0.196238281809361 0.0647743207505277
AT1G48270_at 3.48190414827409 3.37930646183327 3.20142098404692 2.89548795776878 3.03608800661277 3.24715424521574 3.38511067098167 3.52438576666839 3.71926734979962 2.96315696730985 3.31776328260593 3.003744276554 3.05854338600826 3.34377397120876 3.46567253976017 2.9676369791755 2.81959858413122 3.12802611104238 2.88835654669329 0.195986310661511 0.200440325092396 0.195779008697391 0.197078751856817 0.189330371692926 0.201236101937823 0.197668160341308 0.206047227805850 0.193773637772619 0.193267391430176 0.193559661419266 0.19493232220023 0.195680420580991 0.195738688353041 0.191896356091532 0.199273626263768 0.201625358273995 0.194201895164068 0.192674143360324 1 1|0 -|/ 17832074 17833066 17832599.222 17831621 17834088 - gene protein_coding_gene FALSE TRUE AT1G48270.1 GCR1 (G-PROTEIN-COUPLED RECEPTOR 1) encodes a protein similar to G-coupled receptor with 7 transmembrane regions. Overexpression studies suggest this gene is involved in dormancy and flowering. Reduction of expression results in decreased sensitivity to cytokinin. similar to G-protein coupled receptor [Pisum sativum] (GB:AAY30370.2); contains InterPro domain GPCR, family 2, secretin-like; (InterPro:IPR000832); contains InterPro domain cAMP-type GPCR; (InterPro:IPR000848) -0.19990218007589 -2.17898886570844 0.0522161111788805 1 1.35613703810486 6.43303486979772 -0.19990218007589 0.0709456186369903
AT2G36750_at 1.28589692718357 1.40024054393994 0.976862814083362 1.10005289981160 0.845258979741555 1.02890818527459 1.05088055288001 1.23433255062838 1.29040759205101 0.94474758589157 0.596688787152059 0.807619269993792 1.07463942257520 1.07922099570504 1.18772142936532 1.14093165631072 1.44272941122331 1.25079012955172 1.35828331345824 0.194869727790755 0.203450098975879 0.192855199095095 0.198684397076813 0.193215545414293 0.198791217603814 0.195405160454513 0.194450057335885 0.194646308478738 0.198497649015389 0.21775761686578 0.193585594264155 0.196522517065124 0.202485429746466 0.192855199095095 0.196275354744051 0.196702940059752 0.197392371316285 0.198242700268433 2 2 - 15417647 15418154 15417930.182 15417541 15419117 - gene protein_coding_gene FALSE TRUE AT2G36750.1 UGT72C1 (UDP-glucosyl transferase 72C1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups Identical to Cytokinin-O-glucosyltransferase 1 (EC 2.4.1.-) (Zeatin O- glucosyltransferase 1) (AtZOG1) (UGT73C1) [Arabidopsis Thaliana] (GB:Q9ZQ99); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36780.1); similar to DOGT1 (DON-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G36800.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36770.1); similar to glucosyltransferase NTGT4 [Nicotiana tabacum] (GB:BAD93688.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.190168558331245 -2.17867296879526 0.0522447805422669 1 1.35566655370180 2.25048191579367 -0.190168558331245 0.0535161373146414
AT1G32850_at 1.28796727246477 1.13440161242944 1.34035407218166 1.30567891342384 1.13165556450733 1.37144851401493 1.36979702358024 1.48292865151428 1.67267132631863 1.21153365143486 1.32391955304706 1.13429866264058 1.05142123754710 0.81048604585267 1.20480607686242 1.12349636626896 1.46021596125201 1.28969597347286 1.68565245007017 0.194500857782651 0.198234790553767 0.193083981945649 0.193083981945649 0.196480569650496 0.194997281379438 0.197793456543904 0.200430447471388 0.194524965204272 0.204731149401832 0.196234457634321 0.198458214075972 0.194809776419234 0.195900385856150 0.197444856758748 0.195367485961434 0.200519128400016 0.206664355087029 0.200480268258039 1 1|0 +|/ 11906293 11906804 11906500.2 11902609 11906880 + gene protein_coding_gene FALSE TRUE AT1G32850.1 ubiquitin carboxyl-terminal hydrolase family protein similar to UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT2G40930.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10570.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10590.1); similar to Os12g0621000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067298.1); similar to LOC398480 protein [Xenopus laevis] (GB:AAH42353.1); similar to Os10g0160000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064204.1); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1; (InterPro:IPR006615); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2; (InterPro:IPR010460) -0.189991349310920 -2.17750462563181 0.0523509444669651 1 1.35392666592113 2.65206809996082 -0.189991349310920 0.0533626627078802
AT1G56070_at 11.9894327049953 12.262962257557 11.8093636225383 12.1309839164581 11.8196561039089 11.5911270269776 12.1019740067863 12.3775444865193 11.8245731813414 12.0472297267340 11.9472915749487 12.0976209340264 11.9886712094485 11.8141691610387 12.0491518554427 11.6792851008778 11.6451697692547 11.4336247571876 11.89077118516 0.0732196653476482 0.0725480982594585 0.0753276259958791 0.0725480982594585 0.0732783844703501 0.0818446525171992 0.0776506727872272 0.075347467335378 0.0865959572677703 0.0748015298704782 0.0725480982594585 0.0725480982594585 0.0725480982594585 0.0729165925550751 0.07459877671157 0.0725480982594585 0.0836881251185808 0.0778045114066693 0.0725480982594585 1 1 - 20971928 20972412 20972113.091 20971595 20975407 - gene protein_coding_gene FALSE TRUE AT1G56070.1 LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. similar to MEE5 (maternal effect embryo arrest 5), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G06220.1); similar to Elongation factor 2 (EF-2) (GB:O23755); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE88775.1); similar to Translation factor; Elongation factor G, III and V [Medicago truncatula] (GB:ABE88774.1); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, domain IV; (InterPro:IPR005517); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.217090341147031 -2.17749598707468 0.0523517301926583 1 1.35391380260009 23.8867460538959 -0.217090341147031 0.0957951993746954
AT2G44010_at 0.618058286053799 0.711838200031063 1.10288148213482 1.12070468834316 0.724145081566763 0.867212626141044 0.422029251092768 0.506792897757288 0.774845341488977 0.601066451480523 0.774233254624314 0.278502103609092 0.87032779182177 0.55694025183508 0.683291136340034 0.652591614694935 0.987618235369046 1.07293846835028 0.904165032295163 0.214448830673612 0.214317073489189 0.213825702858258 0.211499776329201 0.21184864364074 0.222382367663193 0.211499776329201 0.215104958463067 0.219302001576799 0.228401294027234 0.215901685163796 0.212058095762601 0.216057505333275 0.217012664403183 0.213492644513458 0.211499776329201 0.221053281129253 0.227201720765488 0.2177417043448 2 2 + 18223967 18224232 18224083.727 18223760 18224514 + gene protein_coding_gene FALSE TRUE AT2G44010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59880.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80221.1) 0.181793029735866 2.17738043561268 0.0523622413333233 1 1.35374174128657 1.50649829689115 0.181793029735866 0.0331820921556172
AT2G45040_at 1.47714430128512 1.49870058743479 1.69547177248225 1.82602288826906 1.25180129783724 1.87689418946155 1.41548240685967 1.51371188191370 1.28713544620780 1.64646417266559 1.57435280864649 1.72813808592597 1.45694150253874 1.99073982350052 1.71813895193805 1.82711651287716 2.06926668172686 1.97530189608231 1.62223651975389 0.221692832750639 0.221994316613783 0.223292328334082 0.220727585570339 0.221087606538221 0.224176582195349 0.219921668890177 0.217801362102708 0.229647348018766 0.228721714766348 0.233768373399576 0.226787570432754 0.224745858701831 0.228237970099318 0.217801362102708 0.222859962741466 0.225845198368161 0.230349485243235 0.218487709455574 2 2 + 18585212 18585771 18585420.727 18584725 18585989 + gene protein_coding_gene FALSE TRUE AT2G45040.1 matrix metalloproteinase similar to matrix metalloproteinase, putative [Arabidopsis thaliana] (TAIR:AT4G16640.1); similar to Peptidase M10A and M12B, matrixin and adamalysin; Peptidase, metallopeptidases [Medicago truncatula] (GB:ABE81395.1); contains InterPro domain Peptidase M10A and M12B, matrixin and adamalysin; (InterPro:IPR001818); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidase, metallopeptidases; (InterPro:IPR006026); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) 0.230087614667314 2.17735410509786 0.0523646367704306 1 1.35370253439203 3.22495945524973 0.230087614667314 0.111871296874180
AT4G19020_at 2.58894479811339 2.7911366913634 1.78456797544235 1.97862536943131 3.46842118370359 2.74146903458595 3.42467389457721 3.07252318349807 3.06300183877406 2.55830004822344 3.7715858776907 5.38417334258083 3.33273174315488 3.86739420927437 4.61642854347346 3.84150749059446 2.82190790839760 4.05811328814291 3.25646056898873 0.250461833636693 0.24468221889815 0.244682367328042 0.243647587840134 0.25328186914076 0.265699660374011 0.246021804501835 0.245281140706792 0.255024741539004 0.245194621235671 0.247333069718743 0.258896954743766 0.254944653694478 0.244412134505379 0.277696426234904 0.253038384296047 0.251733853822258 0.263454831558726 0.245666030180368 4 0|4 /|+ 10419508 10420908 10420490.667 10414537 10421220 + gene protein_coding_gene FALSE TRUE AT4G19020.1 chromomethylase 2 (CMT2) similar to CMT3 (CHROMOMETHYLASE 3) [Arabidopsis thaliana] (TAIR:AT1G69770.1); similar to CMT1 (CHROMOMETHYLASE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G80740.1); similar to DNA (cytosine-5)-methyltransferase CMT2 (Chromomethylase 2) (Protein CHROMOMETHYLASE2) (GB:Q94F87); similar to DNA (cytosine-5)-methyltransferase 1 (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) (GB:Q9AXT8); similar to chromomethylase-like protein [Nicotiana tabacum] (GB:BAC53936.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025); contains InterPro domain Chromo; (InterPro:IPR000953) 0.263213698660512 2.17733828448173 0.0523660761123439 1 1.35367897711487 6.19178749254394 0.263213698660512 0.147960157214407
AT4G07400_at 3.60455326615502 3.31534083260434 3.23549069817862 3.12852770097278 3.15893350737657 3.46656276977504 3.05348608993482 3.20311121385081 3.40811552920745 3.7193174187515 2.67216706642875 3.14129188994259 3.55882018242059 2.75730169205666 3.62601457979927 3.2807537507371 3.02697858518357 3.05426454562324 3.38388568200261 0.182580111534472 0.175859856788742 0.175202540219305 0.177607498546103 0.176436229272935 0.187595582017761 0.186984296960944 0.182360679263099 0.179648747387831 0.180735674690307 0.178556316352484 0.184050983150987 0.179085987835198 0.18124542921102 0.186794934884488 0.180399631809166 0.175721274059586 0.180176347032606 0.179932045211733 4 4 - 4197848 4198179 4198009.364 4197844 4199508 - gene protein_coding_gene FALSE TRUE AT4G07400.1 VFB3 (VIER F-BOX PROTEINE 3); ubiquitin-protein ligase similar to VFB1 (VIER F-BOX PROTEINE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G47056.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABD32619.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.205409010845189 -2.17718169688991 0.0523803243096543 1 1.35344581749580 6.59248671644491 -0.205409010845189 0.0797007110902855
AT4G35020_at 7.50563630806971 7.83610808904205 7.23438885917966 7.22173808505499 8.20928435607056 7.85434119206572 6.42269252085119 6.88243719991322 7.1700162326494 6.32469184918893 6.8831217973612 7.06426380867628 6.68761171771538 6.8546567670128 6.84850856734928 7.01020584731235 6.70388391078117 6.63075381486643 7.01629623675459 0.234918163368921 0.230849013960332 0.241550291953364 0.240528667862513 0.231245970575733 0.232869560509737 0.222550185782458 0.222200259950857 0.243147424230805 0.238167305812724 0.222512195749344 0.222900819278545 0.235651436046183 0.24117198079409 0.230170006911031 0.222200259950857 0.226460093789565 0.230429505687917 0.236535623822848 4 4|0 +|/ 16673213 16674464 16673838.556 16672944 16674776 + gene protein_coding_gene FALSE TRUE AT4G35020.1 ARAC3/ATROP6/RHO1PS/ROP6 (rho-related protein from plants 6); GTP binding / GTPase A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein. Identical to Rac-like GTP-binding protein ARAC3 (GTPase protein ROP6) (ARAC3) [Arabidopsis Thaliana] (GB:Q38912;GB:P92989;GB:Q84W42); similar to ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) [Arabidopsis thaliana] (TAIR:AT2G17800.2); similar to rac-like small GTP binding protein [Brassica rapa] (GB:AAB97458.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.233296966488538 2.17701030883463 0.0523959234641295 1 1.35319062630147 14.2320169354886 0.233296966488538 0.115664934394332
AT1G23220_at 8.93395037624203 8.98380221901683 8.97290911154618 9.00740869648221 9.25366181704942 9.27738434921003 9.18853565676102 9.21666706061896 8.7083782451242 8.82669228655914 9.36638543104438 9.3705662144426 8.90499600173273 9.18094873053783 9.18631966368193 9.14044284029411 8.71955557250405 8.97761953540094 8.86104967689391 0.115384784614069 0.10666063490639 0.107661145955953 0.109799872104962 0.106678171620582 0.106972439045754 0.108872135657603 0.109366927991848 0.119938763587228 0.106890343003090 0.109866130310364 0.10666063490639 0.109812692169270 0.10666063490639 0.112327839950391 0.109852105464380 0.119707844666540 0.116346398114914 0.10666063490639 1 1|0 +|/ 8242700 8244091 8243264.6 8242435 8244307 + gene protein_coding_gene FALSE TRUE AT1G23220.1 dynein light chain type 1 family protein similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT5G20110.1); similar to B0812A04.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67632.1); similar to Os02g0580400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047235.1); similar to Os04g0462600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053004.1); contains InterPro domain Dynein light chain, type 1; (InterPro:IPR001372) 0.177124838962329 2.17671910011088 0.0524224384392598 1 1.35275704135715 18.0565704033145 0.177124838962329 0.0122729337879583
AT4G33350_at 7.24078820300109 7.81403299215302 7.78022041128036 7.55891222395985 8.04391707991589 7.29113453956843 8.3605700558924 7.89483606916992 6.76971709357696 6.78152366922856 7.48564173140155 7.64609783595229 6.85344458101006 7.45020862267218 7.81823310305774 7.37191477537021 7.05755444062286 7.1499633016007 6.21826468621746 0.215500248477279 0.209720177405704 0.226246252043780 0.208291928883176 0.219835313320995 0.237332594544497 0.212288714664748 0.208213218650451 0.228903238253415 0.206581258592184 0.211839027888402 0.206438487800372 0.203331451923809 0.207908503180771 0.205442503137837 0.213557243773909 0.230650014805565 0.203331451923809 0.210663592351303 4 4|0 -|/ 16065435 16066481 16066078.125 16064552 16066740 - gene protein_coding_gene FALSE TRUE AT4G33350.1 chloroplast inner membrane import protein Tic22, putative similar to chloroplast inner membrane import protein Tic22, putative [Arabidopsis thaliana] (TAIR:AT3G23710.1); similar to Tic22 [Pisum sativum] (GB:AAC64606.1); contains InterPro domain Chloroplast protein import component Tic22; (InterPro:IPR005692); contains InterPro domain Tic22-like; (InterPro:IPR007378) 0.302643191456824 2.17567771751545 0.0525173625012263 1 1.35120666922568 14.7200351711853 0.302643191456824 0.186480079625585
AT1G31810_at 4.34719734739897 4.51769253663657 4.15254940137637 4.16073855914197 4.8258604965827 4.38778072572033 4.80350838711888 4.78866837215645 4.28354654890812 4.83659005050315 4.68207890284809 4.87141381354965 4.19634615209166 4.85329445441513 4.11780208338434 4.77057425311453 4.39836743954688 4.14837374149689 4.93502553275124 0.231212121076616 0.230984886399776 0.23580137009439 0.226005602739306 0.228096512491201 0.230310782562614 0.234709587231647 0.23748280979197 0.242171594232011 0.227475387330140 0.226443258851325 0.230034333632925 0.224420086138612 0.237633923743939 0.242984266620205 0.229174715128165 0.237679615377151 0.24891995714681 0.22955583139263 1 1 - 11399923 11401006 11400420.455 11399588 11405702 - gene protein_coding_gene FALSE TRUE AT1G31810.1 actin binding similar to actin binding [Arabidopsis thaliana] (TAIR:AT5G58160.1); similar to formin homology 2 domain-containing protein / FH2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25050.1); similar to diaphanous homologue-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19266.1); similar to Actin-binding FH2; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE85432.1); similar to Unknown protein [Oryza sativa] (GB:AAL31655.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.206403527060324 -2.17543268260819 0.0525397217067268 1 1.35084190611477 9.09291717782156 -0.206403527060324 0.0814037409357642
AT4G28460_at 2.71328921396861 3.05309095067962 3.06991378777786 3.07567613461046 2.47587803578888 2.75687554069118 2.50136809104453 2.52595679216209 3.14805825188717 3.08421543430615 2.48222705525371 2.55588627708382 2.72504840880356 2.49156920255794 2.66658574632357 2.61914564120269 2.32532399253299 2.62538954684981 3.10861237957174 0.189765210950617 0.182918786320994 0.195848200661947 0.184981548512039 0.178273129358589 0.182983525219237 0.187385928501557 0.185118571263795 0.189207573208092 0.180191251686115 0.181809225698903 0.183235342099843 0.181534031714962 0.182353720333437 0.186843373280407 0.181050136406262 0.185522256867308 0.184717746402454 0.180626025636919 4 4 + 14066133 14066269 14066202.364 14066004 14066550 + gene protein_coding_gene FALSE TRUE AT4G28460.1 unknown protein -0.203036046004478 -2.17508006097822 0.0525719140207458 1 1.35031701157888 5.60901890454758 -0.203036046004478 0.0764311408725961
AT3G04820_at 3.36503388574029 4.00624377421451 3.93856013058194 3.35350552557169 3.64610154431757 2.87054866691372 3.80949361329678 4.05026482428427 2.84951876493471 2.90495836377942 2.34836227616195 2.80943051801142 2.49581574707956 2.2549727664772 2.27794443477457 2.68571301821473 2.66352592429676 3.06601210208950 2.84510896701184 0.234395204661865 0.235518140146782 0.231593633651207 0.239015767368223 0.232863600567516 0.228131671738396 0.230044779152445 0.228131671738396 0.228131671738396 0.228131671738396 0.228131671738396 0.228131671738396 0.231668764199524 0.232777243992313 0.233500079677687 0.228131671738396 0.243107399457161 0.233085339583411 0.233369271980391 3 3|0 -|/ 1321643 1322504 1321964.25 1321234 1325956 - gene protein_coding_gene FALSE TRUE AT3G04820.1 pseudouridylate synthase similar to Os05g0509300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056001.1); similar to hypothetical protein DDBDRAFT_0216877 [Dictyostelium discoideum AX4] (GB:XP_645579.1); contains InterPro domain tRNA pseudouridine synthase D, TruD; (InterPro:IPR001656); contains InterPro domain TRUD; (InterPro:IPR011760) -0.323443328862423 -2.17469226067999 0.0526073396459153 1 1.34973978458092 6.35084439409686 -0.323443328862423 0.205701661346052
AT3G61080_at 8.99134779057025 8.76755172238192 8.49318507554766 8.5154281020144 9.20207363462388 8.62525612485438 9.99452504539441 9.82901128099664 9.29405536635532 9.76742809178648 9.96205532298479 9.86947292561242 9.72431250469138 9.92695808285076 9.7202318468211 9.96701265658497 9.53973396417075 10.1431652331815 9.8220818665513 0.122764774069757 0.117014607152490 0.1268637251617 0.119750407134517 0.118294580582549 0.121730400616845 0.119081223991309 0.122493667357694 0.141126090137869 0.123188168469666 0.122844053401953 0.117805129944467 0.115485690068854 0.115485690068854 0.118223151801883 0.120632065329005 0.124766968502950 0.119114706336697 0.117222159686010 3 3 + 22619140 22619799 22619521.8 22618105 22620074 + gene protein_coding_gene FALSE TRUE AT3G61080.1 fructosamine kinase family protein similar to hypothetical protein alr5126 [Nostoc sp. PCC 7120] (GB:NP_489166.1); similar to Os03g0117800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048768.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Fructosamine kinase; (InterPro:IPR005581) -0.228930258347273 -2.17413817140505 0.0526579952689545 1 1.34891510182206 18.7945338097196 -0.228930258347273 0.110902615391566
AT4G00740_at 7.83633227026625 7.8877046539629 7.59578392616679 7.7774937389627 8.27346952253436 7.96254414172401 8.5244412088544 8.62470354512064 7.39306610928594 7.67556838374257 8.32265701822654 8.56237165035887 8.49680753884942 8.22581551216999 8.28752291044811 8.18707453751726 8.12339356355472 8.14651032035033 7.68935556790586 0.151583122771789 0.148683809882217 0.160781683725919 0.160423066011235 0.148780267878598 0.160135300690036 0.152805378957602 0.151065388160373 0.176659267209733 0.150682224687162 0.145281967038057 0.150485758712777 0.152790379777633 0.153884490332511 0.146843576882434 0.145281967038057 0.150375493515691 0.170006189604488 0.156672423826245 4 4 - 307921 308628 308337.818 307431 310482 - gene protein_coding_gene FALSE TRUE AT4G00740.1 dehydration-responsive protein-related similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to OSIGBa0139P06.9 [Oryza sativa (indica cultivar-group)] (GB:CAH67036.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE88263.1); similar to OSJNBb0032E06.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE02253.2); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.196024928626102 2.17354787605696 0.0527120120308293 1 1.34803660855647 16.0003170351553 0.196024928626102 0.0653002704529996
AT1G11990_at 0.321523060905873 0.313677492590215 0.242766102553060 0.155508538333397 0.294617075050816 0.395688205238986 0.467418258174623 0.530504098909872 0.864798919078446 -0.0126305826734297 0.426882176282819 0.318452884934279 0.363850854530847 0.0906753689423134 0.225927721530198 0.623243009708003 0.277100701675578 0.141451887954465 0.740661457438446 0.190239179422612 0.188351543685645 0.189730917740993 0.201417666184483 0.192853815034756 0.204020761057413 0.193311241209677 0.188217798418157 0.199559978891763 0.192301695287431 0.192393389284664 0.192014418366681 0.197549694857838 0.189836741109309 0.194011150062776 0.188945174555524 0.192683382740984 0.197552312930520 0.198486584153502 1 1|0 -|/ 4046453 4046989 4046728.8 4046244 4049058 - gene protein_coding_gene FALSE TRUE AT1G11990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62330.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37877.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.179315468135378 -2.17342159360009 0.0527235747424343 1 1.34784868196956 0.759908524124255 -0.179315468135378 0.0255925744702113
AT4G16515_at 5.4596446814569 4.99493909835648 3.95925703615063 3.53126236869584 4.36079568110332 4.74640880979351 4.76219702225411 5.24957840398853 4.16095690327715 4.80237712849634 6.59957646435556 8.13910737447088 6.52866140124264 5.99629164076666 8.40654771971366 6.47781741205683 5.30650413426227 6.61416019414742 6.8027925709796 0.270857719164458 0.267659486744354 0.284505452289471 0.282917440343379 0.267709602280539 0.267659486744354 0.267886156754976 0.27300969957037 0.282855826993559 0.267659486744354 0.268024313195605 0.271995564152217 0.270606143826126 0.275302952337217 0.274206488405116 0.267659486744354 0.269065788153183 0.275433175914311 0.268706643683625 4 4 - 9305413 9305645 9305538.364 9305277 9305786 - gene protein_coding_gene FALSE TRUE AT4G16515.1 unknown protein 0.268024465398889 2.17308521513016 0.0527543861198046 1 1.34734811986075 10.6399898011639 0.268024465398889 0.153362836739765
AT1G32810_at 5.40427497755698 5.74397738849305 5.96567016763828 5.80649433568897 6.16339502266877 6.32812410547607 5.75383991700297 5.49754369692917 5.01076426464634 4.62574251857583 4.44782007213445 4.76431695773006 5.14024345851643 4.63071129871118 4.34158176513398 4.96123085304369 5.25966441275667 4.7476324069629 4.87530388913317 0.199933350649157 0.197560089208378 0.197355240188806 0.203008972426565 0.205093607906604 0.204786976390531 0.201853073529184 0.201149669214982 0.201550752990373 0.197800666923053 0.196114961188070 0.196287093960139 0.195110391087433 0.199000984271373 0.199500335826447 0.197222444902213 0.201064881589639 0.199119662563548 0.205464050107519 1 1|0 +|/ 11882422 11885795 11884120.95 11881790 11885823 + gene protein_coding_gene FALSE TRUE AT1G32810.2 protein binding / zinc ion binding similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT4G10600.1); similar to Leishmania major strain Friedlin proteophosphoglycan 5 [Leishmania major strain Friedlin] (GB:XP_843163.1); similar to OSJNBb0045P24.2 [Oryza sativa (japonica cultivar-group)] (GB:CAD39984.3); similar to Os04g0221600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052269.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.207695920938851 2.1727886502383 0.0527815649074901 1 1.34690682546829 10.6448751400528 0.207695920938851 0.0836335962061688
AT4G34138_at 5.87687110969618 4.95781549699217 4.63697351765949 4.48213434128402 6.66452101141292 5.89387440692768 4.50408152371555 3.83512912504501 3.36784373309823 4.39078478260508 3.83251610307401 3.84107093734408 4.1017382691527 4.46531109743336 3.65273627845548 4.17264724333736 3.965194234071 3.95391819050464 3.94831234595223 0.229357917435213 0.235539206396221 0.226555226216696 0.216854109035738 0.235609698996531 0.246161213302704 0.222103166221987 0.219101577375304 0.230530367295488 0.21650550407827 0.225196865458413 0.220443145059749 0.214969923154098 0.214969923154098 0.224910278446947 0.214969923154098 0.226940040110522 0.217908917350295 0.214969923154098 4 4 - 16348374 16348960 16348642.091 16348110 16349986 - gene protein_coding_gene FALSE TRUE AT4G34138.1 UGT73B1 (UDP-glucosyl transferase 73B1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar to UGT73B3 (UDP-glucosyl transferase 73B3), UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G34131.1); similar to UDP-glucose glucosyltransferase [Rhodiola sachalinensis] (GB:AAS55083.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.360864714539267 2.17239154472293 0.0528179786648612 1 1.34631595614497 9.05665264895334 0.360864714539267 0.239168300338115
AT3G29075_at 8.23354064717533 8.27555625191218 8.6167500609226 8.55715727798878 8.71281619303481 8.12690761813545 7.96236649456193 8.03145327050927 8.58553727871154 8.67889614469378 8.75539283196286 8.99688714257292 8.80880005362372 8.72835212909079 8.14223596560338 8.57947165221044 8.48603312096054 8.02234762857522 8.23062239876929 0.143534696169536 0.137684101924683 0.142210309563365 0.141129278495071 0.142045886770485 0.143954323741102 0.151814240310839 0.142471332351291 0.157361154303191 0.137636093913128 0.143268008298690 0.141069252961903 0.140825703730957 0.145147001690783 0.146906792713806 0.138842116551259 0.151456144749076 0.156643471178768 0.145271401720420 3 3 - 11052882 11053557 11053358.273 11052726 11053931 - gene protein_coding_gene FALSE TRUE AT3G29075.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56660.1); similar to Stress protein DDR48 , related [Medicago truncatula] (GB:ABE86766.1) 0.222133373165425 2.17230607675214 0.0528258190308359 1 1.34618878961944 16.8462144799300 0.222133373165425 0.102873458284593
AT4G14790_at 3.62873261937314 4.10916448291690 4.0200349164404 4.06356132766197 4.92844893941364 4.33605839562466 4.85168684571375 4.36306253707300 2.92411280776365 3.03837581555377 3.36594116749204 3.23004764703205 3.98922681527618 3.48358357194265 3.40506841747218 3.20094014835106 3.28839031793209 3.45280572747444 2.98695784096145 0.304708662157955 0.302613723176746 0.30977632951038 0.298679441124504 0.304517450492552 0.310655244500889 0.298679441124504 0.300825161119039 0.309120358889584 0.302945710218387 0.304865477153761 0.298679441124504 0.298679441124504 0.300840120750378 0.306465673527271 0.303419366998010 0.31085478133409 0.324588821278432 0.300373714677209 4 4|0 -|/ 8497675 8498645 8498238.889 8496026 8500147 - gene protein_coding_gene FALSE TRUE AT4G14790.1 ATSUV3 (embryo sac development arrest 15) encodes a nuclear-encoded DExH box RNA helicase, which is localized to mitochondria and whose in vitro ATPase activity is stimulated with mitochondrial RNA. similar to ATP-dependent RNA helicase, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G39840.1); similar to putative mitochondrial RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:AAK71567.1); similar to Os03g0746500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051250.1); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.271357964355634 2.17121925200067 0.0529256151497325 1 1.34457186505524 7.49266840705112 0.271357964355634 0.156935831055219
AT1G17810_at 2.20652105188903 2.39328861931201 2.08312190697524 2.08416541943801 2.23309967058020 2.15704157102720 2.45001353386082 2.60388756592767 2.91167974890415 2.55539789019005 2.46409949489265 2.56249324632035 2.40017656621841 2.51471321276298 2.74995687506781 2.41020202939847 2.15058831423281 2.76765219290291 2.32923787515148 0.217168495786749 0.205521784111862 0.200116399955079 0.209718830307321 0.209635627235475 0.208872574959571 0.201686270369877 0.212845862079117 0.209533986625562 0.201244819287865 0.202367682120332 0.204606705409989 0.204109360690077 0.205996190214502 0.208841467628424 0.206985314384222 0.216494711262674 0.202165540857180 0.203416330450752 1 1 + 6130710 6131318 6131004.455 6130018 6131620 + gene protein_coding_gene FALSE TRUE AT1G17810.1 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN); water channel beta-tonoplast intrinsic protein (beta-TIP) mRNA, complete Identical to Probable aquaporin TIP3.2 (Tonoplast intrinsic protein 3.2) (Beta- tonoplast intrinsic protein) (Beta-TIP) (TIP3.2) [Arabidopsis Thaliana] (GB:O22588); similar to ALPHA-TIP/TIP3,1 (ALPHA-TONOPLAST INTRINSIC PROTEIN), water channel [Arabidopsis thaliana] (TAIR:AT1G73190.1); similar to membrane protein MP23 precursor - cucurbit (GB:T10251); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) -0.18517857367478 -2.17114964553067 0.0529320127792098 1 1.34446831718421 4.82702095715449 -0.18517857367478 0.0438976838391
AT3G55140_at 6.8495418588774 7.09623135218415 6.18049887663681 6.0170165865248 6.73040695414405 6.83471474523304 6.88826447775852 7.02922662905793 6.62311919204924 6.7199799654813 6.91041547049565 6.98334003978581 7.17791991691161 7.08730576814749 6.86797302264901 6.8575638950085 6.4314550278775 6.79249874693802 6.90265473220713 0.235075785914204 0.226152301983082 0.232771228375656 0.233374045929515 0.226152301983082 0.234751620664956 0.234649300808344 0.234853929128732 0.240491076400117 0.229411248525453 0.231307867025254 0.226152301983082 0.227995784795072 0.226152301983082 0.235607730857106 0.226152301983082 0.256239901152163 0.23099714542391 0.228765729969479 3 3|0 +|/ 20450368 20451170 20450866.111 20449749 20451406 + gene protein_coding_gene FALSE TRUE AT3G55140.1|AT3G55140.2 pectate lyase family protein similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G09540.1); similar to Os01g0546800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043284.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD73403.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022)|similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G09540.1); similar to Os01g0546800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043284.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD73403.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.192591216385339 -2.17110738242514 0.0529358976006523 1 1.34440544634942 13.5218094929967 -0.192591216385339 0.059529951313346
AT3G45240_at 6.44185475820372 5.77028666426948 6.82253239989488 6.23905540594067 6.3124277302142 5.67886506287341 6.20236155634923 5.74307409245322 5.2833491237364 5.35058530442279 5.83793818301522 6.06261155611299 5.4425022907772 5.8160674209147 5.60444724578908 6.00603888145318 5.75201486526381 5.43767256173146 5.33951451860549 0.203454110242883 0.205259011922 0.208179258764479 0.212134354999335 0.210392906068429 0.222915212923463 0.204701426485563 0.200683110486514 0.200018763176215 0.209536364224138 0.203578025620476 0.200798802708060 0.199444314213399 0.210204561478703 0.201676463654472 0.199263608827861 0.207551608669651 0.214338852024141 0.208364582366922 3 3|0 -|/ 16581809 16582698 16582179.222 16581463 16584725 - gene protein_coding_gene FALSE TRUE AT3G45240.1|AT3G45240.2 GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1); kinase similar to GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G60550.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79890.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.322127262644595 2.17076277946614 0.0529675836151176 1 1.34389282832484 11.6860045127184 0.322127262644595 0.205038429800174
AT4G35210_at 1.43945880265618 0.970040704992826 1.48650630941102 1.78911962166727 1.54939667310218 1.70183942662549 1.46064126418683 1.11913877995190 1.51177806644419 1.41627499012450 1.52580395239175 1.77752740943335 1.67215311072361 1.58025611310762 1.58099784551941 1.51913839570076 2.25296238457455 1.48463221168028 1.84860291592764 0.161503498396070 0.162905645898868 0.163031382069877 0.168502921711436 0.159298578538011 0.164864817121566 0.162602635097267 0.16582847132025 0.163029928746921 0.169796155008301 0.163457824955509 0.162345869535380 0.168916207096119 0.159298578538011 0.165164464351498 0.160467453737719 0.164533777514282 0.163802712392121 0.165234385372775 4 4 + 16751613 16752122 16751869.727 16751229 16752244 + gene protein_coding_gene FALSE TRUE AT4G35210.1 carrier similar to carrier [Arabidopsis thaliana] (TAIR:AT4G35200.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320); contains InterPro domain Serum albumin; (InterPro:IPR000264) 0.233180445073597 2.17065493523042 0.0529775035323321 1 1.34373240900993 3.07271899051931 0.233180445073597 0.116319372564774
AT1G66530_at 6.33627767740069 6.14315853876 5.60934105391447 5.57341126298918 5.83445528537805 5.84069422320939 5.89367896615478 6.05978010789715 5.50706485161828 5.50340055651165 5.66816315876903 6.28655710970752 5.85191147103291 5.67872313462648 5.91980974873693 5.29625944017363 5.09329774141622 5.25527502694668 5.81422921712414 0.203315694195316 0.201207615146377 0.202563882626978 0.209070785707344 0.197189350626566 0.204962926009064 0.198167285695321 0.203272372365558 0.214034098893200 0.205198640901935 0.200942039552788 0.209981203173594 0.197189350626566 0.211690972765680 0.200298195820063 0.203532342622151 0.222494208966089 0.199150284054376 0.202343635319916 1 1|0 -|/ 24822731 24823837 24823147.375 24822574 24826005 - gene protein_coding_gene FALSE TRUE AT1G66530.1 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative similar to EMB1027 (EMBRYO DEFECTIVE 1027), ATP binding / arginine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT4G26300.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08191.1); similar to ar (GB:ABE90423.1); similar to Ar (GB:ABE80787.1); contains InterPro domain Arginyl-tRNA synthetase, class Ic; (InterPro:IPR001278); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Arginyl tRNA synthetase, N-terminal; (InterPro:IPR005148); contains InterPro domain DALR anticodon binding; (InterPro:IPR008909); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080) -0.185365152002780 -2.17026971504058 0.0530129519814937 1 1.34315941214881 11.5310902123017 -0.185365152002780 0.0445307229505185
AT3G22040_at 1.66455106328373 1.92828256391805 1.7962608927299 1.86572296904900 1.58434910627111 1.70287521129799 1.586911474307 1.74350461270425 1.97914990168637 2.49221047831787 1.57986759670423 1.71996060106613 1.76888391037717 2.01499886042405 1.39123890145048 1.95690220301837 1.85389247000682 1.99591381547069 2.05443955527753 0.185373521835465 0.176333477736212 0.178169593884588 0.180164983887167 0.176206677074109 0.174351126018046 0.178125400490119 0.179317439618753 0.178958255585029 0.179413229857882 0.173221622537767 0.177129518563141 0.174474729700179 0.180948416760623 0.178083334240035 0.176442223916816 0.175883670504165 0.181743955647458 0.177127091640844 3 3|0 +|/ 7761992 7762615 7762270.8 7761814 7762682 + gene protein_coding_gene FALSE TRUE AT3G22040.1 receptor-like protein kinase-related similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G22050.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC83606.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -0.191784866997721 -2.17020563895194 0.0530188505352571 1 1.34306410529388 3.71429420664946 -0.191784866997721 0.058160048347937
AT2G43140_at 1.64637060187498 1.61217652545619 1.39746559535211 1.63132624340399 0.929490647407238 0.92717376015458 1.19276910539311 1.45022646774188 2.01142969957701 1.37910912815167 1.46901902967271 1.26049994317212 1.28986575612284 1.32416434308410 1.46241727256823 1.55160847352353 1.67522490894784 1.62397164763820 1.37670834232865 0.238593416141071 0.244878266644922 0.234299073172818 0.244520050795883 0.241118503294719 0.237790209995916 0.249571618265281 0.238556765317009 0.238723274909001 0.248258356864240 0.244030257258215 0.234299073172818 0.237664895237836 0.248122071854898 0.234299073172818 0.236595193983999 0.240261035275440 0.241212753256614 0.236720601981408 2 2 - 17939824 17940887 17940441.2 17939453 17942759 - gene protein_coding_gene FALSE TRUE AT2G43140.1 DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G05805.1); similar to B1065G12.3 [Oryza sativa (japonica cultivar-group)] (GB:BAB90521.1); similar to Os01g0900800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045106.1); similar to Os09g0487900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063529.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.193003790857488 -2.16997183432933 0.0530403788294148 1 1.34271635200058 2.87146427427816 -0.193003790857488 0.0604824685790639
AT3G26400_at 5.51398613662426 5.886613339224 5.48908370631608 5.73583287830729 5.26215177963045 5.17281569694486 5.32206222111954 5.61189884456863 5.36432745894761 4.99829472201931 4.68982607617785 4.99364120686765 5.19507451281119 5.13900520906591 4.45520368511553 5.09728876792525 4.69713785010887 5.23443728720168 5.23189382807851 0.215527162131587 0.214571308596272 0.22085111069902 0.220020473961908 0.212473224256711 0.221296227697172 0.223140711240465 0.216321661374317 0.212473224256711 0.230599782091065 0.218182777318666 0.219025911935418 0.220261123655705 0.215811129162645 0.221285315431999 0.220355658375202 0.223120410374441 0.212473224256711 0.212473224256711 3 3|0 +|/ 9668902 9670106 9669861.5 9667853 9670399 + gene protein_coding_gene FALSE TRUE AT3G26400.1 EIF4B1 (eukaryotic translation initiation factor 4B1) member of eIF4B - eukaryotic initiation factor 4B similar to eukaryotic translation initiation factor, putative (EIF4B5) [Arabidopsis thaliana] (TAIR:AT1G13020.1); similar to Os02g0595800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047316.1); similar to Os04g0480100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053098.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC28254.1); contains InterPro domain Plant specific eukaryotic initiation factor 4B; (InterPro:IPR010433) -0.214569649345169 -2.16995075103976 0.0530423205486343 1 1.34268499402738 10.5672424890541 -0.214569649345169 0.0934691276532105
AT3G10830_at -0.081656836700299 -0.375001246590699 0.149595700014621 -0.126137582093337 0.262010651214137 0.17355616995522 -0.156703714034484 -0.26301712329224 -0.127679270094897 -0.375769532280477 -0.244799966516053 -0.173908478602667 0.0171833091273762 0.0323725819194254 -0.098326968437739 -0.256052242408981 0.34469597820415 0.077500751014825 0.187538914589538 0.203467717906114 0.203467717906114 0.204039472434846 0.204142469929571 0.214543073028963 0.206213464198884 0.211032294660807 0.210673320534115 0.211034849247066 0.214680249898060 0.206171394553697 0.20478493092291 0.206141486934024 0.204839084939409 0.207332054138886 0.207192544289452 0.205135861582192 0.210179741532622 0.211536053925118 3 3 + 3390274 3390606 3390435.727 3390255 3390698 + gene protein_coding_gene FALSE TRUE AT3G10830.1 unknown protein 0.200743690696622 2.16959739364199 0.0530748739753085 1 1.34215944741790 -0.123654335386420 0.200743690696622 0.0736665311921207
AT1G69370_at 6.95702963317001 7.29360550819307 6.01154854233117 6.58842123098613 7.0890828578997 6.77176639552766 5.6886126955376 6.42606323783283 6.33482096794266 5.56171313282015 6.27561116244914 6.21990582019777 6.42582466083611 6.63827726911956 6.09171030998299 7.08313997765953 6.14589678342295 6.57674222390663 5.69763144505658 0.254532807919773 0.25068838450996 0.255230202404640 0.250128884160631 0.250720793388223 0.253231826176035 0.252280803071625 0.240639415183336 0.252428123416656 0.257836097368282 0.243320914898238 0.240639415183336 0.243193003897591 0.240639415183336 0.249765469625803 0.242485871875366 0.246713875382882 0.241046233078823 0.24764672388606 1 1|0 +|/ 26084401 26085156 26084782.889 26083619 26085390 + gene protein_coding_gene FALSE TRUE AT1G69370.1 CM3 (CHORISMATE MUTASE 3); chorismate mutase Encodes chorismate mutase 3 (CM3). similar to CM1 (chorismate mutase 1), chorismate mutase [Arabidopsis thaliana] (TAIR:AT3G29200.1); similar to putative chorismate mutase [Fagus sylvatica] (GB:ABA54871.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) 0.295646832671578 2.16939104258919 0.0530938930853025 1 1.34185255584866 12.7516964499614 0.295646832671578 0.180723137045104
AT3G07050_at 4.17724840786663 4.01336633324798 3.53180778971778 3.14595967812497 3.08549377189332 3.38655552518784 3.90390585086838 3.74691151765163 3.63354362442423 3.62889514446947 3.69756366031036 4.51752126222258 3.65902419609696 3.93708820193401 4.14093782998935 3.77029609528488 4.08410533847343 3.56267204782654 3.76866056598494 0.209026761920464 0.199594865681694 0.207622816695171 0.198277115516046 0.206540785336181 0.203968163010043 0.20956859165274 0.202197869030989 0.199630101548673 0.195027052463706 0.201354829879819 0.198227139951045 0.195027052463706 0.195027052463706 0.202107821986483 0.200946880479620 0.205182853813813 0.201958381378474 0.215502267849565 3 3 - 2229616 2230373 2230093.091 2229596 2232365 - gene protein_coding_gene FALSE TRUE AT3G07050.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT1G52980.1); similar to PREDICTED: similar to LOC496093 protein [Strongylocentrotus purpuratus] (GB:XP_783153.2); similar to Os01g0375000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043076.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) -0.214392934393316 -2.16901964878062 0.0531281403281061 1 1.34130023233725 7.42299820464156 -0.214392934393316 0.0933567759567084
AT1G07090_at 6.06086976168254 6.34362794525929 4.87760817676912 4.84161015398224 6.64543629478787 6.5099758730988 3.61918329621035 4.25154689249949 3.97535401332031 4.63953205564503 4.8597031607313 4.18420600684509 4.73298922557633 4.3723263685521 4.38227708218391 4.47069295776286 3.7486295350608 4.34830890809216 5.06739799524133 0.242227581771704 0.241009748420140 0.244898011514205 0.242586197282308 0.239466884599535 0.24918104497382 0.244794967627591 0.240764236373875 0.245424374124421 0.240421953354434 0.242036953841945 0.244149041003454 0.243012323704927 0.239576643361588 0.240793051070468 0.239883205420834 0.248559885337183 0.242845430506696 0.247109101639777 1 1 - 2174233 2174764 2174531.636 2173951 2174893 - gene protein_coding_gene FALSE TRUE AT1G07090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58500.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB68109.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) 0.238240475805806 2.16896656028892 0.0531330374819094 1 1.34122128363405 9.86780880445427 0.238240475805806 0.122304636472986
AT2G01735_at 4.50299580605326 4.3285864489303 4.57237290498005 4.40790547516627 5.32559543609108 4.60317825309302 4.51307812043129 4.19744344729525 3.59392967502619 3.62783528951794 3.34133373597547 3.42739648993996 3.60798988749914 3.60951436252878 3.87426143103933 3.77203527952911 3.66586212796688 3.95367492659064 3.23107301747005 0.260110488015506 0.253442100180844 0.251680303532470 0.263802920191408 0.256706764200029 0.262791160153496 0.250831560698768 0.253087266981775 0.257884180532686 0.257583868349501 0.250831560698768 0.254379064103657 0.255154810093293 0.257789094394674 0.252409080694694 0.250831560698768 0.262786639286887 0.254532021580927 0.258817024737029 2 2 + 324716 325482 325165.1 324471 326093 + gene protein_coding_gene FALSE TRUE AT2G01735.1 RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS); zinc ion binding encodes a RING-H2 zinc finger protein essential for seed development. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G68070.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE90731.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.256983132225341 2.16872520616996 0.0531553066395907 1 1.34086237043031 8.12678841524093 0.256983132225341 0.142597462227308
AT4G01940_at 8.70225005318161 8.69939231584715 8.71634812099618 8.72867343979353 9.18988286655529 8.52457371513562 8.77013847094281 8.48402055473457 7.78782042536702 7.89335563486048 8.18405906995084 8.13718545233366 8.19483322482783 8.0711671179 8.27681041952015 8.27958138814216 8.37568140546283 8.07170524895621 7.84787380146979 0.148045895262754 0.154998577118213 0.159373855826530 0.159812065539215 0.157195674723952 0.153960340080089 0.152577392410325 0.154608991055352 0.166359057504761 0.162929821730187 0.161415145118107 0.148045895262754 0.157333076965255 0.156568429165523 0.153868574382505 0.154597574434068 0.184260754117083 0.152146448830463 0.159064327887893 4 4|0 -|/ 842358 843266 843015.6 841989 843459 - gene protein_coding_gene FALSE TRUE AT4G01940.1 NFU1 (NFU domain protein 1) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast. Identical to NifU-like protein 1, chloroplast precursor (AtCNfu1) (AtCnfU-IVb) (NIFU1) [Arabidopsis Thaliana] (GB:Q93W77;GB:Q9SYJ1); similar to NFU2 (NFU domain protein 2) [Arabidopsis thaliana] (TAIR:AT5G49940.1); similar to Nitrogen-fixing NifU, C-terminal [Medicago truncatula] (GB:ABE87765.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) 0.240890241132282 2.16832303076951 0.053192434132508 1 1.34026433269029 16.7478572103746 0.240890241132282 0.125349384684584
AT3G15760_at 6.62492212526336 6.6152789843485 7.51110277176374 7.39482433588502 6.27154670723545 6.61815640149983 5.2173914919206 6.09931912168878 5.85385057408484 4.60611066342955 4.19815319898263 3.64950872343572 5.24792080555444 5.73942013505315 3.40585805858701 5.74543602239451 5.94450335687824 5.42868784540432 5.05269878846921 0.192280818178588 0.198746895430764 0.190400619502864 0.193777610501366 0.194878326855943 0.201849313893092 0.195176372252623 0.192587203454011 0.200000030052718 0.191641961047353 0.196549866210485 0.225926502463667 0.194988087873647 0.190400619502864 0.194518732047912 0.190400619502864 0.200548421272947 0.194099023838831 0.204854286465772 3 3|0 +|/ 5337743 5338192 5337962.8 5337554 5338474 + gene protein_coding_gene FALSE TRUE AT3G15760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52565.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28733.1) 0.279364483124544 2.16819471698079 0.0532042848293948 1 1.34007353699282 11.5894790892577 0.279364483124544 0.165224006125982
AT2G36240_at 7.65699705320725 7.81497358462051 7.86646356095468 7.86954771211144 8.47746390944171 7.78782642732798 7.9109645889986 8.0049587323326 7.46375300705672 7.40986709391593 7.73609435837278 8.32502359674331 7.92508060680608 7.86209114062804 7.85984698658196 8.12343987666442 7.6840302790757 7.44317162666242 7.76069313772987 0.160690155611815 0.157769679711581 0.168084609524337 0.158740659167676 0.161811017264132 0.167753565769904 0.163407771130812 0.162389644483545 0.175987332766606 0.172593182427714 0.161840079683618 0.157769679711581 0.157769679711581 0.169381682620745 0.176855923012061 0.158533120157705 0.168204727325501 0.162528174099153 0.165002245125807 2 2 + 15203672 15204176 15203903.091 15202732 15204343 + gene protein_coding_gene FALSE TRUE AT2G36240.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE77859.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.239214071021772 2.16804038679705 0.0532185416570972 1 1.33984406134084 15.6309586403790 0.239214071021772 0.123513134002441
AT4G10090_at 4.48692573351669 5.01855651735953 4.5512558769735 4.81545223177926 4.99886914353436 4.66600724462105 4.67316181160886 4.95330231018395 4.44944124362433 4.3682699891587 3.86346716812077 4.20341838178435 3.99957419581418 4.04814306382213 4.13716029077724 4.10828624339636 3.68045972979561 4.22244773288901 4.6614321223721 0.252997719459884 0.245529860880055 0.247221953796095 0.243106156077972 0.242007378493038 0.255804806052467 0.237491318122244 0.241894931237198 0.254369693371982 0.241489482780757 0.245082505517636 0.245149252358242 0.246410939112844 0.238696708387755 0.254993609117867 0.237491318122244 0.262572010948007 0.244158208000029 0.239981729571308 4 4|0 +|/ 6305645 6307247 6306657.5 6305364 6307514 + gene protein_coding_gene FALSE TRUE AT4G10090.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN64485.1) -0.242634326595983 -2.16760417261928 0.0532588582480542 1 1.33919547822373 9.03340005162298 -0.242634326595983 0.127369496011776
AT3G51040_at 8.22102836439027 8.32519872339204 8.22723409011572 8.34055259281697 8.63729878665061 8.37164862864738 8.15761456355693 7.97400861787627 7.84534636945722 8.14218567959104 8.2135463941279 8.24897468290084 8.19147180201708 7.898694224376 8.15891897751461 8.30080301800983 8.27344163639755 8.2349961830698 8.09557501105525 0.148904760229591 0.154464321287018 0.148003487217825 0.152284406161981 0.160607756126812 0.165599475534467 0.154989964373903 0.155669733756270 0.162283116347314 0.147551854514433 0.148481845386407 0.159267098798013 0.150857100119023 0.154397346005502 0.151319509759877 0.143409094009299 0.158461779225366 0.143409094009299 0.156925460361750 3 3|0 -|/ 18963300 18963872 18963491 18963125 18964782 - gene protein_coding_gene FALSE TRUE AT3G51040.1|AT3G51040.2|AT3G51040.3 RTH (RTE1-HOMOLOG) Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids. similar to RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) [Arabidopsis thaliana] (TAIR:AT2G26070.1); similar to green ripe-like 2 [Lycopersicon esculentum] (GB:ABD34617.1); contains InterPro domain Protein of unknown function DUF778; (InterPro:IPR008496) 0.193562234343829 2.16748454936745 0.0532699193690492 1 1.33901762458677 16.3907271550155 0.193562234343829 0.0619075568720919
AT3G06220_at 0.663077449387215 0.71412410717337 0.510464082255474 0.655357081603799 0.531160728366957 0.329315647522263 0.95069884902922 0.743413369553438 0.97668556021814 0.707582428731186 0.646759028307772 0.834820825041866 0.959539448025944 0.938496250211344 0.809651854624594 0.447326501870887 0.804949269653389 0.548968526637858 0.922724513629798 0.202348363415898 0.200367551817967 0.201941360056622 0.200649090169177 0.202600002514723 0.208287631095972 0.2048644999003 0.199077119841430 0.205985941585778 0.203581026668842 0.204399688426651 0.199077119841430 0.208520644377472 0.199077119841430 0.204188552306252 0.200454243490079 0.199077119841430 0.213716453693947 0.204042223153481 3 3 - 1883712 1884665 1883941.545 1883622 1884959 - gene protein_coding_gene FALSE TRUE AT3G06220.1 DNA binding / transcription factor similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT3G06160.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE81219.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.190718798330845 -2.16677409824465 0.0533356572508992 1 1.33796140703458 1.44610714631467 -0.190718798330845 0.0566891920394976
AT4G30230_at 2.02849768828738 2.05044897416527 3.53897907203838 3.85663089231933 0.903488571634886 1.18019161488885 1.70866212364853 1.57829535544072 1.41431782977891 1.20123847564030 1.05835547384988 0.922452359861186 1.09589948236236 1.00372447674243 0.451296436034647 1.03626994864715 1.02100432551866 1.58853426165447 0.82294933633653 0.228051239941444 0.231387424905763 0.272277281108427 0.249474134769974 0.226171795504763 0.236517553930175 0.232850235014031 0.230544707898441 0.235797476175161 0.228125136537846 0.227013886713426 0.226617289011017 0.236412174541567 0.226171795504763 0.234352922106909 0.226171795504763 0.230767819371815 0.235784143510252 0.235805896779073 4 4 + 14806650 14807112 14806868.273 14806351 14807431 + gene protein_coding_gene FALSE TRUE AT4G30230.1 similar to hypothetical protein MtrDRAFT_AC152818g26v1 [Medicago truncatula] (GB:ABE77890.1) 0.202185025333411 2.1661247700063 0.0533958069984241 1 1.33699616193774 3.1898296079708 0.202185025333411 0.0764080154397624
AT4G00800_at 4.3915861886503 4.40316381266428 4.67742909192050 5.08203256052351 5.04949060490357 5.15537973471640 4.67107762862129 4.95522959348184 4.00291912917068 3.73470153679049 3.50148801180393 3.52927448365072 4.40726670283330 4.13534445430364 4.05448569257553 4.22087065680547 4.11452902197730 4.09669585379456 4.18364099090025 0.233114389975382 0.233041605743502 0.234477347327120 0.236048454854588 0.262171362569322 0.247355944672564 0.255032509281494 0.242961189022738 0.241267554069065 0.242442929057819 0.245640325628844 0.232717095495396 0.245092036882989 0.237533600793430 0.247090509773449 0.232717095495396 0.233453148274444 0.243918617657699 0.249724755423972 4 4 - 342186 342710 342503.7 342147 345714 - gene protein_coding_gene FALSE TRUE AT4G00800.1 similar to PREDICTED: similar to vacuolar protein sorting 8 homolog [Gallus gallus] (GB:XP_426694.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.209779583129575 2.16576849107984 0.0534288379063197 1 1.33646658447024 8.78879777460448 0.209779583129575 0.0875240715995486
AT2G02860_at 5.20016084571911 5.09762784709070 5.12165878963829 4.46827207595367 4.76400746207132 4.54469598182807 5.20114929404375 5.02642470283782 5.26748856643895 5.04759223308599 4.87983625266238 5.68764230925281 4.74465347071489 4.7765605944202 5.41925872338605 4.98836905178408 4.59302688298611 5.36527484983879 5.07335556315693 0.238448722581684 0.240148322225179 0.24652146836249 0.242818956912491 0.239790040341171 0.245287321522499 0.250589644264768 0.238448722581684 0.249631738736020 0.239507066335402 0.242283453792842 0.238448722581684 0.242105698581408 0.240796933535642 0.239440510806161 0.238448722581684 0.250822595937077 0.240610684633526 0.241392867957936 2 2|0 -|/ 828568 829460 829042.4 828351 832454 - gene protein_coding_gene FALSE TRUE AT2G02860.1|AT2G02860.2 SUT2 (sucrose transporter 3); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter|SUT2 (sucrose transporter 3); carbohydrate transporter/ sugar porter encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. Identical to Sucrose transport protein SUC3 (Sucrose permease 3) (Sucrose-proton symporter 3) (Sucrose transporter 2) (SUC3) [Arabidopsis Thaliana] (GB:O80605); similar to SUT4 (SUCROSE TRANSPORTER 4), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G09960.1); similar to sucrose transporter 2A [Hevea brasiliensis] (GB:ABJ51934.1); similar to sucrose transporter 2B [Hevea brasiliensis] (GB:ABJ51932.1); similar to sucrose transporter type 2 [Manihot esculenta] (GB:ABA08445.1); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002)|Identical to Sucrose transport protein SUC3 (Sucrose permease 3) (Sucrose-proton symporter 3) (Sucrose transporter 2) (SUC3) [Arabidopsis Thaliana] (GB:O80605); similar to SUT4 (SUCROSE TRANSPORTER 4), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G09960.1); similar to sucrose transporter 2A [Hevea brasiliensis] (GB:ABJ51934.1); similar to sucrose transporter 2B [Hevea brasiliensis] (GB:ABJ51932.1); similar to sucrose transporter type 2 [Manihot esculenta] (GB:ABA08445.1); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) -0.239666557864984 -2.16563695477839 0.0534410376594276 1 1.33627107468027 10.0211529021185 -0.239666557864984 0.124317033686473
AT4G23750_at 2.42938091238592 3.05411030036107 2.037911105201 1.68371301258205 3.00289509744507 2.64043367761066 2.64572299662287 2.27226595055072 2.16586456202646 1.75313738973724 2.51074526180313 3.60708001023458 3.34152415169233 2.60808177311536 3.85612883896885 3.71144272308491 2.52462553741237 2.87825379891351 3.0895261287898 0.217471985975932 0.213118628406313 0.222709264682402 0.220700352024029 0.211300984381139 0.210757106646432 0.218425412413108 0.209522542572242 0.231671894401351 0.219291465518838 0.215068388160121 0.225425028387733 0.218099205813395 0.216377939842450 0.230541988718199 0.215040490840056 0.21909053845815 0.210897619203876 0.207274374921342 4 4 + 12377241 12377750 12377492.455 12376204 12378032 + gene protein_coding_gene FALSE TRUE AT4G23750.1|AT4G23750.2 CRF2 (CYTOKININ RESPONSE FACTOR 2); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to CRF1 (CYTOKININ RESPONSE FACTOR 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G11140.1); similar to Pathogenesis-related genes transcriptional activator PTI6 (PTO-interacting protein 6) (GB:O04682); similar to Os01g0224100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042450.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.267213709140757 2.16555385067569 0.0534487467810517 1 1.33614755444967 5.20375977597207 0.267213709140757 0.153482174811220
AT1G22450_at 8.89798727713982 8.8267746019869 8.87629762709306 8.9763517383561 8.38332643119548 8.75235432049887 8.90789938539145 8.853264475151 8.04929928485902 8.28356880895126 8.56348324161142 8.96651025586464 8.4503739415899 8.36858674535131 9.10844966274253 8.52788993089256 8.62147455025297 8.61502496819601 8.0717076631743 0.121704074657940 0.122970136493766 0.117407555638897 0.122999274298647 0.116282215697449 0.123379607533244 0.118615567646208 0.127795896293049 0.132688268928222 0.123135125992109 0.119349590084872 0.119005848490898 0.117209174559701 0.127398421145216 0.122624967309205 0.118073868288217 0.120580144768966 0.119345992632946 0.127532359740470 1 1|0 +|/ 7925441 7926876 7926232.625 7925110 7927267 + gene protein_coding_gene FALSE TRUE AT1G22450.1 COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase subunit 6b of cytochrome c oxidase similar to cytochrome c oxidase subunit 6b, putative [Arabidopsis thaliana] (TAIR:AT5G57815.1); similar to putative cytochrome c oxidase subunit [Triticum aestivum] (GB:AAM92706.1); similar to Os03g0390400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050275.1); contains InterPro domain Cytochrome oxidase c, subunit VIb; (InterPro:IPR003213) 0.196733335384863 2.16409623528252 0.0535841341882665 1 1.33398131502651 17.2030733559637 0.196733335384863 0.0679663521227075
AT1G77140_at 4.78173214894804 5.13937465811642 4.72218559461738 4.94888132719743 5.40119747626026 5.19543254333624 5.06452771907836 4.36599741412232 4.66630334268973 4.37048440709116 5.36056310268583 4.77364569604325 4.85827437679 4.43012677557937 5.23796097744629 4.75584800227416 4.67900253607990 4.79586382653958 4.67772840916009 0.209296775198265 0.211495565711919 0.218772137064199 0.216820185396295 0.22216407084162 0.225764385380708 0.213021486470543 0.212973788592505 0.229622298978497 0.221500545265762 0.206485356762519 0.206630942638480 0.209851786361403 0.210274496042322 0.206485356762519 0.206485356762519 0.228496283085217 0.210799118004649 0.215997253419721 1 1|0 +|/ 28991361 28992259 28991794.111 28988919 28992877 + gene protein_coding_gene FALSE TRUE AT1G77140.1 VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face. Identical to Vacuolar protein sorting-associated protein 45 homolog (AtVPS45) (VPS45) [Arabidopsis Thaliana] (GB:O49048;GB:O80650); similar to SEC1A, protein transporter [Arabidopsis thaliana] (TAIR:AT1G02010.1); similar to vacuolar protein sorting 45A [Xenopus tropicalis] (GB:NP_001072504.1); similar to Os02g0437800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046739.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.259460762826341 2.16382803785204 0.0536090806504582 1 1.33358278625895 9.66887413420628 0.259460762826341 0.145775615174422
AT1G48260_at 3.48821719889887 3.88874313232596 4.3089820304213 4.3545697791861 4.18906246174797 4.14015314619902 4.90201153524097 5.02779766776857 3.60721817366182 4.74935049185742 3.89032860808024 3.43073517864502 5.17208721129191 4.15008765650451 3.25500736651824 4.5125261602225 4.91402315414324 4.03869137568146 5.1200944759341 0.218015265026972 0.220902685225757 0.226729722246016 0.220217276995565 0.216845061737485 0.220932546859176 0.217581702536997 0.217072792518576 0.231919099919962 0.222778965512115 0.223007133341159 0.230619065908592 0.216782795467544 0.232186010028982 0.245785840010796 0.216782795467544 0.235732985208478 0.243136407433931 0.216782795467544 1 1 - 17817913 17818799 17818354.091 17817644 17820894 - gene protein_coding_gene FALSE TRUE AT1G48260.1 CIPK17 (CIPK17); kinase Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17). similar to CIPK1 (CBL-INTERACTING PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G17510.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.200142868717608 -2.16378981385306 0.053612636966793 1 1.33352598855281 8.6187705619921 -0.200142868717608 0.0735662557875705
AT1G27440_at 2.61187865753928 2.73281370552235 2.90795618512416 2.7767951400873 2.83018299802345 3.31372768008273 2.99910764401933 2.63807667338366 2.83679999752887 2.63697779155324 2.7305794439087 2.84312293542039 3.31198807738967 2.81663447880503 2.80920176903742 3.02223765744429 3.67113260596901 2.66969728517282 2.75737589307107 0.196429615126839 0.191681525757115 0.191224786193823 0.193628034238832 0.189418926688711 0.196237063626671 0.190190073129431 0.194593709249702 0.205309699767121 0.198727531324636 0.192465428901310 0.192037466675872 0.194864151539562 0.197779391722897 0.195047430420069 0.187778763764024 0.200330635802632 0.20019143681861 0.188044862381839 1 1 - 9529270 9530072 9529604.364 9529128 9531362 - gene protein_coding_gene FALSE TRUE AT1G27440.1 GUT2; catalytic similar to GUT1, catalytic [Arabidopsis thaliana] (TAIR:AT5G61840.1); similar to secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] (GB:AAX33320.1); similar to Unknown protein similar to exostosin-2 [Oryza sativa (japonica cultivar-group)] (GB:AAM74308.1); similar to putative pectin-glucuronyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD26319.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.226151359152807 2.16360106013123 0.0536302016857451 1 1.33324552107919 5.71533842332002 0.226151359152807 0.108899014991927
AT4G14220_at 5.53457574757374 6.61025029505228 6.57201709625476 6.54492879952641 4.95655995298547 4.87117208719914 4.80932472399056 4.81839267055241 3.31247064663705 3.37074032369417 3.20745210023374 4.22857569884462 3.39042184236043 3.56554147571694 3.28441595686375 3.85663443413134 4.04567343240875 4.07004696176056 3.50636677824182 0.256029719242172 0.239686588920834 0.241819235863992 0.242911249267552 0.245971346257136 0.261929766437939 0.239273808272968 0.242283125857085 0.255921852441241 0.244770669476019 0.238167202743822 0.240090820984283 0.24485632537021 0.248950532139855 0.239404046975391 0.237442597949224 0.250969270797316 0.236033975700267 0.238668119180237 4 4|0 +|/ 8197135 8198011 8197484.6 8195876 8198557 + gene protein_coding_gene FALSE TRUE AT4G14220.1 zinc finger (C3HC4-type RING finger) family protein similar to CIC7E11, protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G22000.3); similar to putative RING-H2 zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAP85546.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.301301473149102 2.16356782849156 0.0536332946654753 1 1.33319614333788 9.14096324863236 0.301301473149102 0.186801493811912
AT1G61010_at 6.74172790543719 6.96747634880595 6.60920546750614 6.8769210344556 7.1560099306873 7.43021945506579 6.87550298144414 6.52654391201332 6.17469957807158 6.43847721515381 6.78090443282995 6.77908444918448 6.92657465681678 6.72654788156986 6.60887524179615 6.71315477006225 6.34355307227357 6.57830037802717 6.85088474900503 0.187455874486837 0.189698559954826 0.190373530867240 0.189480754514532 0.193132290223652 0.197527993236855 0.198913770390177 0.197345997104068 0.202565333096097 0.195991403426429 0.192155712135845 0.187455874486837 0.192515283144835 0.200538268266655 0.195484511564255 0.187455874486837 0.215050018976606 0.193689859213882 0.193849023620376 1 1 - 22478633 22479174 22478939.091 22477963 22481396 - gene protein_coding_gene FALSE TRUE AT1G61010.1|AT1G61010.2|AT1G61010.3 cleavage and polyadenylation specificity factor, putative|hydrolase similar to ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II), catalytic [Arabidopsis thaliana] (TAIR:AT2G01730.1); similar to PREDICTED: similar to Cleavage and Polyadenylation Specifity Factor protein [Gallus gallus] (GB:XP_419942.2); similar to unnamed protein product [Macaca fascicularis] (GB:BAE01170.1); similar to Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase [Medicago truncatula] (GB:ABE87741.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279); contains InterPro domain RNA-metabolising metallo-beta-lactamase; (InterPro:IPR011108) 0.217190015623390 2.16277296185360 0.0537073261769477 1 1.33201515497804 13.4830233166253 0.217190015623390 0.0978328815091945
AT2G07740_at 2.93584206090146 2.44779483233949 2.74861341478316 2.62912259371949 2.28362773749647 2.40509070487125 2.57671645976542 2.55049226659344 2.95356479293455 3.12426859713101 2.8718603646378 2.77771064893233 2.55857935976959 2.85927642747681 2.93136132213289 2.54165160082806 2.43099251509578 2.63988579347751 2.95863094555607 0.209117729698384 0.202373434013722 0.210558475439268 0.200450158849455 0.196560448405710 0.199147523923212 0.196727386769373 0.198195597940093 0.204395376791971 0.201772458544375 0.196697582869778 0.195711018630828 0.197967370148909 0.198076594684957 0.194746969114893 0.196774508571277 0.194061593215194 0.194122433049229 0.198512261397723 2 2 - 3570273 3570783 3570474.727 3570258 3571570 - gene protein_coding_gene FALSE TRUE AT2G07740.1 zinc knuckle (CCHC-type) family protein similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to Zinc finger, CCHC-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE79649.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) -0.210918908339530 -2.16221466346532 0.0537593825613701 1 1.33118574021119 5.42894727510097 -0.210918908339530 0.0895729860593451
AT3G09720_at 2.59126454575157 2.66557497045392 2.4953297078158 2.63437379866092 2.59266125645616 2.19797779223485 3.05961540628675 2.83259519087182 2.40718760265695 2.61499599986567 2.66768291409297 2.56537013693529 2.10131701697005 2.46579183767085 2.54454797125532 2.56418056267282 2.58524583395381 2.60472706907201 2.83218998649544 0.186091326875063 0.200222173541661 0.188466710195928 0.185415305354507 0.186815422630768 0.188122249835398 0.187684258008356 0.190703013435907 0.185283643718619 0.185811368775507 0.189345329379754 0.185022609363139 0.198152890365626 0.192268184324630 0.187420615272250 0.186746580509573 0.193965041374456 0.197198414253102 0.186337048442051 3 3|0 -|/ 2980525 2981338 2980927.444 2980226 2983622 - gene protein_coding_gene FALSE TRUE AT3G09720.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 57 (EC 3.6.1.-) (RH57) [Arabidopsis Thaliana] (GB:Q84TG1;GB:Q9SF31); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to Os07g0647900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060473.1); similar to Helicase, C-terminal; Type III restriction enzyme, res subunit [Medicago truncatula] (GB:ABE78310.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.20647175069694 -2.16179255611094 0.0537987722103714 1 1.33055870060296 5.19891530731676 -0.20647175069694 0.0833844307804165
AT3G61400_at 1.02489331713669 1.15276023128201 1.49080878598192 1.44250254867704 1.30191066189728 1.20527724097855 1.17848588494780 1.00480311700260 1.28806580677391 1.21429651157976 1.49022507894054 1.47510098496402 1.26135287571760 1.35204913002071 1.12992855320987 1.44860491786648 1.21792493432451 1.43903084013941 1.26157407800372 0.213339524471535 0.217669792011496 0.215247867005195 0.213657692159123 0.216921601950851 0.212232628928439 0.217812101707589 0.218043382490031 0.212473998873766 0.216813616295022 0.220304386372149 0.213654702111825 0.213378121985047 0.212232628928439 0.212274802218878 0.215244752729414 0.214460139345099 0.217368546902133 0.219836693011234 3 3 + 22730740 22731343 22730982.364 22729931 22731372 + gene protein_coding_gene FALSE TRUE AT3G61400.1 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein similar to 2A6 [Arabidopsis thaliana] (TAIR:AT1G03410.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.183510435368426 2.16168797011016 0.0538085360716132 1 1.33040334472360 2.52839153841316 0.183510435368426 0.0417442724824560
AT4G33666_at 9.88874848909004 10.2285861198685 9.58501071533155 9.85673413729365 10.1835553780281 9.99562030589227 10.6484577794324 11.3351821835351 11.4402948973973 11.3742132649004 11.7629559511527 11.692978566489 11.3448026894676 11.6133609602048 11.3171575186788 11.7056836195566 11.0447360402216 11.5094764551281 11.3693601573541 0.125396822367033 0.112565748297785 0.128011896475287 0.121715982631599 0.108364040639660 0.117544818822559 0.117992453439528 0.111685194035531 0.113660638072389 0.111568158575385 0.109174745277959 0.110474514024346 0.109675146236819 0.112740504927801 0.115538782628637 0.111415559833622 0.117972847668301 0.108265964263098 0.108265964263098 4 4 + 16169171 16169368 16169282.364 16169051 16169538 + gene protein_coding_gene FALSE TRUE AT4G33666.1 unknown protein -0.25787115347499 -2.16164745391314 0.0538123190054387 1 1.33034316116368 21.6619952627238 -0.25787115347499 0.144397835193089
AT1G53800_at 4.51915024413134 4.75681331272175 4.16319549745902 4.31538047709013 4.91022558749898 4.61314295216444 4.91862617476146 5.04811078784661 3.44687758271382 3.78950264775677 4.29041357915783 4.52301586304022 4.10550223073126 4.27615153796705 4.81009107297372 3.83242191084538 4.40349775466442 3.9514100448382 3.45295668564146 0.220453783666131 0.227766301211898 0.214227805595536 0.215370788016673 0.227502914063269 0.218149110206556 0.240651917733963 0.226085735409738 0.228938755459687 0.218707697126512 0.214227805595536 0.225732629200916 0.215859299409192 0.227325516610152 0.21681858345526 0.216630906554407 0.237412046330581 0.219909603602258 0.224158988018537 1 1|0 +|/ 20085839 20086665 20086100 20085367 20088168 + gene protein_coding_gene FALSE TRUE AT1G53800.1|AT1G53800.2 endonuclease similar to endonuclease [Arabidopsis thaliana] (TAIR:AT1G53250.1); similar to NUMOD3 motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65982.1); similar to Os10g0198600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064296.1); contains InterPro domain Intron-encoded nuclease 2; (InterPro:IPR003611) 0.200380846297215 2.16087132155904 0.0538848341454628 1 1.32919035263903 8.57416828153319 0.200380846297215 0.0743668786455837
AT4G10350_at 1.05983870000336 1.37965714050556 1.0249878219521 1.30990261560013 1.10921493725192 1.13379215336110 1.24302816650092 1.28587390223125 1.76561914799904 1.36900503576788 0.971824959816855 0.983526614926236 1.14723393055292 1.62478989012687 1.19428439763721 1.28362120635571 1.18045238830557 1.46710638649852 1.47044419970645 0.191005222658680 0.192740756871888 0.195195007169216 0.197104199123884 0.194244337356304 0.196401534496298 0.191574677741331 0.195243502714740 0.199003234352604 0.189489482606854 0.190606111078364 0.196097685762056 0.199407762944354 0.195726148234419 0.194828180660076 0.190502044954353 0.189489482606854 0.192183320923582 0.198804262989062 4 4 - 6415351 6415755 6415609.364 6415252 6416825 - gene protein_coding_gene FALSE TRUE AT4G10350.1 ANAC070 (Arabidopsis NAC domain containing protein 70); transcription factor similar to ANAC015 (Arabidopsis NAC domain containing protein 15), transcription factor [Arabidopsis thaliana] (TAIR:AT1G33280.1); similar to Os08g0115800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060852.1); similar to hypothetical protein [Zea mays] (GB:CAH56056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.200521458991297 -2.16068473107153 0.0539022814173167 1 1.3289132261183 2.57660081281010 -0.200521458991297 0.0746144747286274
AT4G10040_at 6.82391434060486 7.18155088242735 7.69898466820849 7.7483565192232 6.3439561040297 6.38051833826143 7.89585654526385 7.95273182030127 6.79210510998907 7.0910234119859 7.89884526209098 7.68027975962479 7.05217874411282 7.66735450500145 7.59334606157511 7.71676483095453 7.78420629603333 7.46043494582999 6.51215478729174 0.181480995138824 0.172738832644004 0.170327488240890 0.181124160441362 0.174900075143683 0.173864244511140 0.174586746455723 0.180580560991401 0.179616293722907 0.176610611170729 0.175134627586308 0.1726835449328 0.174951847484514 0.174436907763084 0.172531073455148 0.177295588538004 0.183873536098017 0.177508861711112 0.187265019314087 4 4|0 +|/ 6277081 6278238 6277555.1 6276995 6278506 + gene protein_coding_gene FALSE TRUE AT4G10040.1 CYTC-2 (CYTOCHROME C-2); electron carrier Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. Identical to Probable cytochrome c At4g10040 [Arabidopsis Thaliana] (GB:Q9T0G2); similar to ATCYTC-A/CYTC-1 (CYTOCHROME C-1), electron carrier [Arabidopsis thaliana] (TAIR:AT1G22840.1); similar to Cytochrome c (GB:P00051); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c; (InterPro:IPR012125); contains InterPro domain Cytochrome c, class I; (InterPro:IPR003088); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Cytochrome c, class IA/ IB; (InterPro:IPR002327) 0.193844520589340 2.16032278939753 0.0539361403502668 1 1.32837568897759 14.4557856874942 0.193844520589340 0.0635638683977288
AT4G22650_at 1.09769280764525 0.75814064497329 0.948903026621425 0.96380209723659 0.662310399012556 0.726959663685605 0.779143729636607 0.905408327907624 1.29190018728222 1.59100797857077 1.28932921418783 0.577484072308486 1.02772095886296 0.95301352622343 0.927647987433595 1.15279495422774 1.22886019594344 1.44113328223250 1.32605406823534 0.229102037992232 0.229102037992232 0.238424751225907 0.233349928224152 0.231216717512526 0.231775109479489 0.233647850872288 0.229102037992232 0.233603418554232 0.239724311781916 0.231214092776525 0.238874540073416 0.237590967224006 0.233246606123624 0.229102037992232 0.229102037992232 0.229102037992232 0.234361151301336 0.244926682556861 4 4 + 11913582 11914007 11913746.909 11913568 11914038 + gene protein_coding_gene FALSE TRUE AT4G22650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22666.1); contains domain Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin (SSF47699) -0.193920984168462 -2.16010177268906 0.053956825980364 1 1.3280474613707 2.09416280473501 -0.193920984168462 0.0637348673076232
AT3G03320_at 3.42485597861569 3.39574060058049 2.55699440038608 2.77989985886087 2.65309558455159 2.97908505212138 3.00200810881192 3.04594276942403 2.53414345793870 2.58508286088432 2.85753542101379 3.10244676943494 2.33623497582840 2.87830011624941 3.18763618849955 2.13018654319013 2.5588612671268 3.14925220957874 2.96306886733326 0.203600564403677 0.208356367396568 0.203536954063378 0.207097033728179 0.206606402352039 0.205116811666961 0.203536954063378 0.204062089720798 0.212399512377289 0.208515700899842 0.206804994000835 0.208098138541583 0.216531503871639 0.205461578928166 0.203536954063378 0.204540939191627 0.203536954063378 0.210570498207309 0.208585056203886 3 3 + 782015 783270 782588.545 781722 783471 + gene protein_coding_gene FALSE TRUE AT3G03320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43470.1); similar to ProFAR isomerase associated, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96077.1); contains InterPro domain ProFAR isomerase-like; (InterPro:IPR010759) -0.19695492469913 -2.16009002725994 0.0539579254822264 1 1.32803001878182 5.71428033504433 -0.19695492469913 0.0689474487436949
AT2G19430_at 7.0919621798331 7.02433336265697 7.16300686633437 7.23488419490264 7.10997248108806 7.16461206870865 6.75178092316373 6.25249366266772 5.74489886430245 5.94372140264434 5.78518839830332 5.55820429329968 6.02652385035916 5.74021527879477 5.77034613905349 6.14146848239613 6.63488900990968 5.77490271642561 6.00263092179505 0.267216246189962 0.270335568034132 0.262192124431259 0.259856938609094 0.266392222184508 0.259340045101483 0.25931794982415 0.266958779838125 0.276397864483326 0.265137040140561 0.260542911483427 0.25931794982415 0.25931794982415 0.25931794982415 0.268401513748985 0.25931794982415 0.263530129755499 0.262111556984609 0.265006311929353 2 0|2 /|+ 8423062 8424780 8423873.111 8422241 8425042 + gene protein_coding_gene FALSE TRUE AT2G19430.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os09g0363600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062993.1); similar to MGC130957 protein [Xenopus laevis] (GB:AAI08528.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.209929956082582 2.15945424226864 0.0540174737967544 1 1.32708589221251 12.8871562177436 0.209929956082582 0.0885818902775133
AT1G55040_at 3.7257151365155 3.6556901649692 3.5862940068955 3.68013896941541 3.18208329831627 3.40420533786219 3.75249269794785 3.69581989557471 3.82326772332669 3.63717013584998 3.61770334522938 3.7980744410455 3.28118924117644 3.54571266867162 3.88116927221347 3.54547623197405 3.6839333359735 3.48428343809850 3.72722191439318 0.178372548560744 0.17333561925605 0.184414429997509 0.17333561925605 0.17333561925605 0.182133155220262 0.178892525330853 0.173991635516917 0.173781510450368 0.182537703196669 0.1827499233882 0.178989586049677 0.179440488538574 0.173725235472715 0.175932409264999 0.177339995576388 0.181225577458927 0.174079215187484 0.17333561925605 1 1 + 20541976 20542485 20542247.636 20538541 20542780 + gene protein_coding_gene FALSE TRUE AT1G55040.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G70650.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE90693.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -0.184388124177472 -2.15875580593935 0.0540829621736622 1 1.32604883867048 7.25226127409763 -0.184388124177472 0.0445461598440142
AT3G58080_at 2.22000818342683 2.47035852143011 2.89747902796281 2.9117624891531 2.20408384616889 2.64070119456883 2.36079515090707 2.62247748938081 2.33057384560231 2.53128871949435 2.25518731647787 2.31858412195161 2.03327820891008 2.31732746897096 2.52306971586723 2.13122554732363 2.87094011483547 2.66669081336674 1.73989358712435 0.216157121828813 0.21315768792355 0.221075183883591 0.219366343143343 0.213527992609943 0.225923419429497 0.202885527079668 0.213755722373611 0.206569260552414 0.208443464210531 0.204596634197812 0.203039282060711 0.205850817327225 0.208004127041426 0.203793509937935 0.202885527079668 0.207608138142973 0.2101061667067 0.208766738664856 3 3|0 -|/ 21521283 21521507 21521374.778 21521283 21521539 - gene protein_coding_gene FALSE TRUE AT3G58080.1 unknown protein 0.217024666283241 2.15830745960009 0.0541250408426248 1 1.32538318434352 4.83601988664312 0.217024666283241 0.0981986737520808
AT4G24510_at 6.3151286170846 6.74701089090688 4.42594762803195 4.82058967000043 6.7395719258787 6.65141664212719 6.70157447338889 7.29260241483793 8.38598544745706 7.59500426691448 9.54323325458616 9.37062770669604 8.40960336003179 9.24731146397637 8.97256421897897 7.59139167257628 6.95470029258038 8.15425895801695 7.8429561464935 0.211616019324549 0.208309743669138 0.217455390789838 0.208717340106464 0.198634177676553 0.213127643194719 0.200129486648009 0.202374696096566 0.208235504734749 0.204230743057270 0.212578251079681 0.213409041401406 0.216817938743036 0.205504040323356 0.206517548415155 0.208272629269440 0.209747717556397 0.206431996623311 0.208568127083427 4 4 + 12661990 12662485 12662205.727 12660759 12662666 + gene protein_coding_gene FALSE TRUE AT4G24510.1 CER2 (ECERIFERUM 2); transferase Involved in C28 to C30 fatty acid elongation. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G23840.1); similar to Os04g0611200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053836.1); similar to orf [Zea mays] (GB:CAA61258.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.257775776784824 -2.15824757926157 0.0541306631517867 1 1.32529428429839 14.4476186092248 -0.257775776784824 0.144720683250369
AT4G09420_at 3.16577506643579 3.69865883888522 3.09108671470232 3.43203402903787 4.01283156885422 4.22938202456911 2.97566855813133 3.19431311238963 3.76570095675078 2.692558292483 4.00118715898931 3.11996139330882 2.50030770505813 3.53633966262126 3.21089811439342 2.69412813921731 2.62567969435753 2.85732458310741 2.62524078525959 0.268830468477135 0.269404560626608 0.273358847908086 0.258349316659574 0.264940967721943 0.273042973245715 0.261730963576225 0.262007893197208 0.269539783084873 0.263205085310933 0.265473109535982 0.261301136367572 0.260158972609671 0.262709286802298 0.268294647127915 0.259368732849585 0.264133134663649 0.266386181813476 0.256201641343673 4 4 - 5962318 5962791 5962609.818 5962178 5963788 - gene protein_coding_gene FALSE TRUE AT4G09420.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72850.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81440.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.236562325940457 2.15819466434146 0.0541356319234455 1 1.32521572600918 6.52299956473207 0.236562325940457 0.121743645681431
AT1G26100_at 2.85088566230892 2.86785810078677 2.83065738611781 2.14621315171772 2.59376289131246 2.43169578007908 4.36250155937844 3.54242048388367 3.22697895579128 4.48922008182033 4.56902787523851 4.86149336684772 3.7744336056489 4.18224574924903 5.2023672589125 3.81705531262421 4.22370002495472 4.69162420799915 4.61798541195709 0.240906659901463 0.238708727543605 0.238431331026956 0.236422053051443 0.238143208633632 0.238287180009846 0.239990079520062 0.245673151495589 0.251257718396211 0.239387884943884 0.237735883218776 0.242555594655636 0.242090372486420 0.243469284000742 0.249527580997155 0.237070138847324 0.237937160922727 0.254181810106740 0.239239185703617 1 1|0 -|/ 9022795 9023567 9023088.4 9022529 9024068 - gene protein_coding_gene FALSE TRUE AT1G26100.1 cytochrome B561 family protein similar to ACYB-1 (Arabidopsis cytochrome b561 -1), carbon-monoxide oxygenase [Arabidopsis thaliana] (TAIR:AT5G38630.1); similar to cytochrome b561 [Citrullus lanatus] (GB:BAE46407.1); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593); contains InterPro domain Cytochrome b561; (InterPro:IPR004877) -0.300742770310622 -2.15810600192793 0.0541439583983023 1 1.32508409792107 7.21656849780173 -0.300742770310622 0.186991205263996
AT3G13240_at 2.5884202191914 2.19210472986727 2.77789641270633 2.79586995602034 2.58379042591316 2.71099834305524 2.64908428021962 2.58119206786418 2.96281685190758 2.73499540771192 3.38121453101458 2.89513104593766 3.09496354786585 2.92309616773975 2.91330338027778 2.95810444089947 2.83845538413248 2.77790652148883 2.66818307275269 0.173556370532036 0.172745932988028 0.175290829457473 0.174411984808476 0.183938474387911 0.17826280163982 0.175115842769936 0.172885241985467 0.178501475718125 0.173159874279960 0.175850073756753 0.175296750167915 0.172745932988028 0.175950292673089 0.176982540632743 0.174463316663866 0.175639629889591 0.173826972034603 0.172745932988028 3 3|0 +|/ 4275767 4276223 4275993.3 4275767 4276247 + gene protein_coding_gene FALSE TRUE AT3G13240.1 unknown protein 0.199272613383486 2.15790133004313 0.0541631842206007 1 1.32478024937294 5.49063804845983 0.199272613383486 0.0730487949297718
AT3G22020_at 1.96251272642414 1.98802630410171 1.66891661733417 2.36001294176214 1.74996496640336 2.00411187334313 1.62834979997297 1.81406914008981 1.94344586993545 0.719563557894761 1.62270855315551 1.57677684022542 2.23225027992880 1.89981807157156 2.03950631732246 1.71572053778053 1.83935752529380 1.74687570618448 1.66012230723919 0.217970471086704 0.205760573272022 0.223452556752614 0.210342795917084 0.221468631090764 0.20809146832766 0.212463358283751 0.208003454783343 0.205933450456571 0.20733752116022 0.215579117824484 0.205033945093465 0.213809681104345 0.209266826603007 0.209720186889269 0.207544710963607 0.211605014807285 0.21087417311527 0.206099607317347 3 3|0 +|/ 7756693 7757253 7756958.5 7756584 7757453 + gene protein_coding_gene FALSE TRUE AT3G22020.1 receptor-like protein kinase-related similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G22040.1); similar to Protein kinase [Medicago truncatula] (GB:ABE84759.1); similar to Protein of unknown function DUF26 [Medicago truncatula] (GB:ABE89786.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 0.245297462153285 2.15786913262331 0.0541662092714317 1 1.32473245113002 3.53458086649024 0.245297462153285 0.131492781929878
AT2G39630_at 5.62179410388284 6.28356732538073 5.81042037213285 6.36773306131545 6.53196828688701 6.22189478009104 5.80840129667203 6.03125231503036 5.02728919683119 5.57262025636305 5.96934693968312 6.06495956167312 5.91937931816826 5.45259310690816 5.20574657143597 6.04661547652681 5.74732118198595 5.37528702191252 5.79965350617864 0.287432463010727 0.300872078897412 0.295206055847247 0.300293014489511 0.28915831963435 0.286585552965073 0.27282886029754 0.278083919931048 0.284142357092757 0.287586106633636 0.286454455758484 0.277427093700051 0.284140671955137 0.278608139508132 0.284670260547962 0.276181718514377 0.285959993253403 0.277605684256742 0.282485264749007 2 2 - 16529123 16529743 16529460.273 16528822 16531765 - gene protein_coding_gene FALSE TRUE AT2G39630.1|AT2G39630.2 glycosyl transferase family 2 protein similar to dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative [Arabidopsis thaliana] (TAIR:AT1G20575.1); similar to Os03g0821800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051729.1); similar to putative dolichyl-phosphate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAO18453.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.276442762847107 2.15785958793307 0.0541671060565669 1 1.32471828173625 11.6792175095462 0.276442762847107 0.163657877565588
AT3G21060_at 5.53756825843573 5.80264472503894 5.10613936170190 5.39295231783978 5.95576333714698 5.60904504873648 5.66998106183895 5.79931654930655 4.11435909880781 4.77296063134412 5.22957843985228 5.09548328061379 4.98435967273845 5.10366605288406 5.39334494264479 5.07340070166203 5.38527653825948 4.90727757091115 4.71456950236234 0.251698849332773 0.249855469698641 0.258160808833879 0.255725795351931 0.248979763809888 0.268822816192371 0.248979763809888 0.256458859813612 0.25669560907211 0.254456250729286 0.258726151037958 0.253956912248303 0.254426410866211 0.254188876697506 0.254483410960389 0.25074709125561 0.259196266148920 0.265242884188255 0.24915027291767 3 3 + 7378913 7379539 7379186 7377440 7380219 + gene protein_coding_gene FALSE TRUE AT3G21060.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to hypothetical protein MtrDRAFT_AC147431g31v2 [Medicago truncatula] (GB:ABE88086.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.213091345071119 2.15774031322721 0.0541783138746739 1 1.32454121647221 10.4494320712309 0.213091345071119 0.0931073405391098
AT4G22910_at 3.4269733216398 3.64077966355201 3.12108610113535 3.27570532803427 3.23085114706051 3.24952615457448 4.36573776430987 4.29691020899815 3.73294169648156 3.73271363304058 4.50189221242519 4.57996252745788 3.91029443933565 3.76227368633174 4.41115350751631 3.31718879712164 3.27410995435901 3.82022082862798 3.34860360576485 0.185350356667895 0.182115496238546 0.180653714816503 0.184763925528981 0.188062877354201 0.188469963437771 0.185553471066788 0.191899325379617 0.201926301139686 0.183123897840200 0.186888490710863 0.181149164890359 0.183576908562797 0.18256339226005 0.187672981026995 0.184426715909614 0.186424531028173 0.183626423559597 0.187043170654153 4 4|0 +|/ 12014778 12015435 12015166.375 12012688 12016022 + gene protein_coding_gene FALSE TRUE AT4G22910.1 signal transducer similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G11920.1); similar to cell cycle switch protein CCS52a [Lupinus luteus] (GB:AAQ54906.1); similar to cell cycle switch protein CCS52A [Lotus corniculatus var. japonicus] (GB:AAY58271.1); similar to cell cycle switch protein [Medicago sativa subsp. x varia] (GB:AAD22612.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Cdc20/Fizzy; (InterPro:IPR000002); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.185462020602939 -2.15762277294238 0.0541893608735302 1 1.32436672924562 7.35189119745101 -0.185462020602939 0.0473000677912034
AT3G07440_at 5.2488629001514 5.35378847640089 4.72634668897819 4.67700074196522 4.54780463968032 4.78126343673841 4.77534412313044 5.02607026157178 5.02926288017159 4.52392355560746 5.12183545931765 4.97037844859476 4.73474094179785 5.0049221216609 4.85982758502360 5.14085018024182 4.84210845343764 4.61320920528767 5.08412096105231 0.252727088218677 0.258535819609533 0.26536650818304 0.250023295270937 0.251109762065816 0.260215700218600 0.257599462981848 0.255872316296 0.253952883006002 0.26196955828758 0.255937462663147 0.255237357471053 0.250023295270937 0.250023295270937 0.254452338559553 0.250517876981704 0.271187413349601 0.258069854562488 0.25232421836137 3 3|0 +|/ 2381531 2382868 2381978.571 2381343 2383213 + gene protein_coding_gene FALSE TRUE AT3G07440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48530.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD22058.1) -0.193015489831655 -2.15714177044850 0.0542345901204274 1 1.32365272021088 9.78710341609242 -0.193015489831655 0.062590071821187
AT3G24780_at 1.81301997446991 1.79824884407556 2.42670720326035 2.22392816503372 1.75492167494046 2.28157688362294 1.63934733440912 1.87741264715561 2.4245839500064 2.10709510339074 2.45061695180648 2.37748120490917 2.10373490517416 2.02772578503905 2.35293524126237 2.5169749517599 2.18262579408302 2.47428380740998 2.23160066529471 0.206545917667653 0.210355565096293 0.205209273285800 0.211227524657033 0.207388566578659 0.215197602029877 0.206325626203259 0.217349597573394 0.214652300322147 0.205209273285800 0.207524117031347 0.211899039942849 0.207346412035466 0.217388878314781 0.205942851235573 0.208166932467635 0.219276019311097 0.210577544729549 0.211395022348497 3 3 + 9051010 9051503 9051282.636 9049453 9051600 + gene protein_coding_gene FALSE TRUE AT3G24780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13210.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43400.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43390.1); similar to Os06g0652100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058232.1); similar to hypothetical protein MG06799.4 [Magnaporthe grisea 70-15] (GB:XP_370302.1); similar to Os02g0179600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046085.1); contains domain vWA-like (SSF53300); contains domain alpha/beta-Hydrolases (SSF53474) 0.223073519485024 2.15666602109614 0.054279360729065 1 1.32294656241121 4.25950729240986 0.223073519485024 0.106027349507431
AT3G04730_at 10.3143143252796 10.4850175576620 10.1148336687242 10.1443622400787 10.8491572407822 10.8142516184045 10.3007625459402 10.3618400748058 10.4034563592162 10.0625839286113 10.7136366828562 10.5377191512524 10.8185361289853 10.5819913881613 10.6425884668834 10.7411619244481 10.4639957048580 10.711598167524 10.7549880426498 0.0841664806215269 0.0820637530224656 0.0836813907992281 0.0835673032844327 0.0807262922948767 0.0824938314935553 0.0818538801005767 0.0807262922948767 0.0829554373337178 0.0826052029482417 0.0812804782107313 0.0815077878434372 0.0813352956754945 0.0824968127297107 0.0807262922948767 0.0807262922948767 0.0828279778288459 0.082297959743591 0.0807262922948767 3 3|0 -|/ 1289518 1290278 1289715.125 1288618 1290608 - gene protein_coding_gene FALSE TRUE AT3G04730.1 IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23050.1); similar to auxin-regulated protein [Populus tremula x Populus tremuloides] (GB:AAM21317.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.179780787227083 2.15635524616313 0.054308625324511 1 1.32248530587682 20.9522738566414 0.179780787227083 0.0323572412038533
AT2G23980_at 5.34608572125534 5.62514324325184 5.32520265751773 5.43800412612581 6.79424685901909 6.12988946442807 5.2533181331464 5.40821221805465 5.5882865606273 5.36084003286358 5.95060907730041 5.94467675187071 5.74783477402194 5.77646553671858 5.30091966983986 5.56845075825742 5.29042157686185 5.59313645872687 6.07443219532552 0.241310912535704 0.235694691145164 0.238794126572916 0.244254433104006 0.241804938334194 0.234342746051779 0.240106758992086 0.243342935596166 0.241776528795447 0.23067453969572 0.245770000704383 0.232020858164348 0.231830545240997 0.236980309419002 0.252470162631798 0.230158898847333 0.232601327163824 0.234799413500748 0.234477979036445 2 2 - 10208371 10208832 10208638.091 10208184 10211547 - gene protein_coding_gene FALSE TRUE AT2G23980.1 ATCNGC6 (CYCLIC NUCLEOTIDE GATED CHANNEL 6); calmodulin binding member of Cyclic nucleotide gated channel family Identical to Probable cyclic nucleotide-gated ion channel 6 (AtCNGC6) (Cyclic nucleotide- and calmodulin-regulated ion channel 6) (CNGC6) [Arabidopsis Thaliana] (GB:O82226;GB:Q9XFS4); similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5), calmodulin binding / cyclic nucleotide binding / potassium channel [Arabidopsis thaliana] (TAIR:AT5G57940.2); similar to ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30560.1); similar to ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G19780.1); similar to Cyclic nucleotide-gated ion channel 9, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97880.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.242845338511594 2.15603067815510 0.0543392047863002 1 1.32200360167758 11.3255547637108 0.242845338511594 0.129034296430982
AT3G48740_at 11.0286658348238 11.0866634033383 11.8420048506119 11.9132361276907 11.8006201117334 11.5688327475819 11.1626627828351 11.3065589430543 10.3020873097034 9.84969545127632 9.21294497117582 9.37900888821 10.2383852174221 9.67253389962218 8.90930524585064 9.9777567664392 10.3227227825698 8.8805874910837 9.35710258353225 0.147138285697667 0.149917805640848 0.149206895336269 0.151503946480370 0.154882694776153 0.149775270269618 0.150135159324806 0.147773838685390 0.144249027506558 0.155838401681850 0.157454377868891 0.144889859680318 0.142499592935013 0.144043305429379 0.153059791721761 0.143424434661222 0.154221125515783 0.154594503398491 0.157514919129782 3 0|3 /|- 18063814 18064932 18064242.556 18063492 18065738 - gene protein_coding_gene FALSE TRUE AT3G48740.1 nodulin MtN3 family protein similar to MTN3 (ARABIDOPSIS HOMOLOG OF MEDICAGO TRUNCATULA MTN3) [Arabidopsis thaliana] (TAIR:AT5G23660.1); similar to MtN3 [Medicago truncatula] (GB:CAA69976.1); similar to Os12g0476200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066755.1); similar to Os11g0508600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067955.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.186448130675495 2.15602287449902 0.0543399402162219 1 1.32199202026804 21.1688809865257 0.186448130675495 0.0498172349480278
AT1G74300_at 5.85396737431327 6.07881161819268 5.67450522580513 5.45312436408395 5.67880098989912 5.28888478526564 5.00448112976553 5.68976375962224 5.455585100801 5.28059086069044 4.68943416985075 4.41849922414394 5.26090485124335 5.62659963350317 4.0134264564889 5.14479175561469 5.6274769161521 5.23893155903174 5.43051248802865 0.249023063078312 0.235377004653443 0.245552535521814 0.231279987172314 0.225552000019646 0.236516562051743 0.238617906291101 0.242552550517799 0.234724985065639 0.226225631551434 0.22856172284899 0.225602455388382 0.23199344169056 0.235875366738273 0.238937389301556 0.226791433780938 0.234840645241794 0.231633297917336 0.235840347389767 1 1 + 27939756 27940080 27939909.182 27938959 27940269 + gene protein_coding_gene FALSE TRUE AT1G74300.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G74280.1); similar to Os02g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047024.1); similar to H0717B12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67158.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.259657604148209 -2.15589307142283 0.0543521744689781 1 1.32179938156177 10.7859945161653 -0.259657604148209 0.146965225103506
AT2G45400_at 2.51546082098748 2.59468727641678 2.8032649874248 2.41233735969856 2.62276988108691 2.61572515957852 2.78340979237625 2.68947670533119 3.13795693284675 3.40135248444694 2.77437302699494 2.90641000376375 2.93569182786294 2.66407483983403 2.40018997676891 3.02117274927777 2.97889190462866 3.09598629425389 3.09176545106148 0.176447348905950 0.173359716565495 0.180993756979460 0.175785197712625 0.173359716565495 0.190655142550538 0.173359716565495 0.181426513202432 0.186766364297938 0.179235814036212 0.183819502977029 0.173359716565495 0.184765908401814 0.186201203635417 0.181660780972070 0.17887035851472 0.184433065982164 0.179480538633713 0.191638659676312 2 2|0 -|/ 18711094 18712303 18711837.4 18710903 18713340 - gene protein_coding_gene FALSE TRUE AT2G45400.1 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family similar to DFR (DIHYDROFLAVONOL 4-REDUCTASE), dihydrokaempferol 4-reductase [Arabidopsis thaliana] (TAIR:AT5G42800.1); similar to vestitone reductase (GB:AAB41550.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.197746881679669 -2.15562736743057 0.0543772258807693 1 1.32140506678927 5.65837005654998 -0.197746881679669 0.0709258779847916
AT4G22220_at 10.7084756511118 10.6676130686206 10.8938486995671 10.8298097239198 10.7962833568570 10.7538420248151 10.7829271499279 10.7818251801674 9.54312592158324 9.82034384174546 9.89385106125064 9.8398905387358 9.93513337927443 9.87901207898467 9.9239145783109 9.88524304914333 10.3181975803332 9.8502999580672 9.65371169738357 0.0979053595864573 0.091268384121757 0.0925985671871021 0.09155959588439 0.0901974554158213 0.0948445924048878 0.0932672621886973 0.0948960348605314 0.108261678574466 0.0902667775197611 0.096987831974044 0.0942924987234815 0.0979527067216911 0.0924720201515234 0.0892994340858112 0.0950556827138067 0.0980498766564128 0.0932519510186672 0.0929789811796844 4 4|0 -|/ 11759552 11760858 11760519.6 11759167 11760972 - gene protein_coding_gene FALSE TRUE AT4G22220.1 ISU1 (Iron-sulfur cluster assembly complex protein) Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein. similar to ATISU3/ISU3 (IscU-like 3), structural molecule [Arabidopsis thaliana] (TAIR:AT4G04080.1); similar to Os05g0568100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056355.1); similar to iron-sulfur cluster assembly protein IscU [Chlamydomonas reinhardtii] (GB:AAL29442.1); similar to Os01g0662600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043783.1); contains InterPro domain FeS cluster assembly scaffold IscU; (InterPro:IPR011339); contains InterPro domain Nitrogen-fixing NifU-like, N-terminal; (InterPro:IPR002871) 0.175767323303961 2.15548317575719 0.0543908253235442 1 1.32119108784013 20.5833714059983 0.175767323303961 0.0150599542805110
AT4G21470_at 8.65901761772204 8.86663773331602 9.25621425027236 9.25284412467238 9.3293977300832 8.8857071071757 9.12436414805532 8.9551239258449 7.8636508244261 8.52969160604894 8.16602171564345 8.33026133111668 8.47836761015984 8.54508026129735 8.10077562701145 8.62360936644393 8.42041683533581 8.33947997722498 8.31051330163196 0.160938048127075 0.157303997400111 0.162675198838978 0.151781463295726 0.156151387767804 0.166035418490641 0.157464016459750 0.159636706737755 0.183152970584481 0.157688890296605 0.162050140031434 0.152517657532809 0.157772715669880 0.156149284964782 0.166911629245409 0.151495413815284 0.163640809136567 0.157843329149752 0.162059376062218 4 4|0 +|/ 11431735 11433154 11432443.111 11431116 11433333 + gene protein_coding_gene FALSE TRUE AT4G21470.1 ATFMN/FHY (RIBOFLAVIN KINASE/FMN HYDROLASE); FMN adenylyltransferase/ riboflavin kinase Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN. similar to GS1 (GLYCEROL-3-PHOSPHATASE 2), hydrolase [Arabidopsis thaliana] (TAIR:AT5G57440.1); similar to GPP1 (GLYCEROL-3-PHOSPHATASE 1), hydrolase [Arabidopsis thaliana] (TAIR:AT4G25840.1); similar to HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66125.1); similar to Os10g0464400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064794.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Riboflavin kinase / FAD synthetase; (InterPro:IPR002606); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) 0.210318979988263 2.15517709571262 0.0544197039952543 1 1.32073688443101 17.3462234135918 0.210318979988263 0.08969192869264
AT2G11810_at 2.62513000023122 2.03915053097827 3.32654237926938 2.90388481521876 2.24160010035931 2.59006802835047 2.49026146875342 2.58747212527964 2.54744732099378 2.39853277200519 3.01765424102369 2.33152346803041 3.30561553642528 2.80773091214435 2.20036365718047 2.67942599665897 2.41917438920193 2.37056008854700 2.45333360195220 0.168348398368253 0.165756908623011 0.167829755985609 0.164778010371883 0.169305775165827 0.167575792910049 0.176395165301689 0.169735004957295 0.172302624196297 0.167575780831382 0.169201171392694 0.167105370748306 0.165187489264374 0.167437554710011 0.161968160757586 0.164227020068686 0.165612507485821 0.171097438299578 0.164661382692432 2 2|0 +|/ 4752981 4753652 4753321.667 4750404 4753859 + gene protein_coding_gene FALSE TRUE AT2G11810.1 MGDC (monogalactosyldiacylglycerol synthase type C); 1,2-diacylglycerol 3-beta-galactosyltransferase MGDG synthase type C similar to MGD2 (monogalactosyldiacylglycerol synthase 2), 1,2-diacylglycerol 3-beta-galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G20410.1); similar to Monogalactosyldiacylglycerol synthase [Medicago truncatula] (GB:ABE87260.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296); contains InterPro domain Monogalactosyldiacylglycerol synthase; (InterPro:IPR009695) 0.252544218661649 2.15340255299060 0.0545874197526738 1 1.31810401002759 5.15448564828934 0.252544218661649 0.139831077212405
AT3G56960_at 1.29041934683805 1.17509168293165 1.50129609158049 1.06458989800758 0.957984871874937 1.01261320295979 0.93049338063353 0.895365776212631 1.25011297744775 1.3661966316584 0.737377725506794 0.9803100610726 0.925361644416528 0.865850567911092 0.86976536715428 1.03515873546996 1.19070879444756 1.44123707790509 1.80066776148915 0.193847333914310 0.191810175409501 0.194853797083028 0.203613932436598 0.189032864543402 0.192066454329442 0.18767967219365 0.192911519209265 0.195686679629303 0.190828432103229 0.192152978355774 0.192859595228856 0.190487212447320 0.192306229357377 0.188543251791583 0.188417439548691 0.193325947976648 0.193847997246975 0.197078130120393 3 3|0 +|/ 21094253 21094816 21094569.1 21091936 21094864 + gene protein_coding_gene FALSE TRUE AT3G56960.1 phosphatidylinositol-4-phosphate 5-kinase family protein Identical to Putative phosphatidylinositol-4-phosphate 5-kinase 4 (EC 2.7.1.68) (AtPIP5K4) (1-phosphatidylinositol-4-phosphate kinase 4) (PtdIns(4)P- 5-kinase 4) (Diphosphoinositide kinase 4) (PIP5K4) [Arabidopsis Thaliana] (GB:Q9M1K2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G07960.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G41210.1); similar to ATPIP5K1 (Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase 1), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT1G21980.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 4, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96031.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABD28331.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 4, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA91440.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.202663037005606 -2.15324567342322 0.054602270392793 1 1.31787128482018 2.34250529984680 -0.202663037005606 0.0789688787962268
AT1G28580_at 8.8810195278546 8.9083573482611 8.51067301623488 8.72820891423684 9.06068951509762 8.86722393228984 7.32508804354492 7.58106351744652 7.53780094456274 7.49238134648669 6.96996576245738 7.23511153447451 7.29232638267284 7.39260260542221 7.13140316016211 7.37889217384536 7.20621452558776 7.1837023092159 7.32272290552951 0.152865321229274 0.150807258028476 0.153742449649079 0.149871476323963 0.152875836901291 0.162054721674253 0.152304450951540 0.153935288003868 0.162320883858899 0.154112910401475 0.15793167493232 0.149515931000081 0.154832353838136 0.157264556158996 0.158992693626417 0.151098952490599 0.16856837252704 0.157994703664837 0.156930966612579 1 1 - 10044613 10045311 10044850.818 10044323 10046428 - gene protein_coding_gene FALSE TRUE AT1G28580.1|AT1G28580.2 GDSL-motif lipase, putative similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28570.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.195312821529062 2.15310329287825 0.0546157518418893 1 1.31766007341974 15.8201633296655 0.195312821529062 0.067251633743624
AT1G43630_at 1.75860910824148 1.99365595548479 1.42835338673943 2.18146305523927 1.84520152919149 1.87862160134633 2.11628637891342 2.19196317654036 1.93069973458824 2.16669568652382 2.04487655806687 1.54080285189090 1.83738116234111 1.74591315170348 1.71418986350172 1.91606958073222 1.56352379943023 2.01995110655615 2.25127686679302 0.237854165862784 0.235765202125681 0.252455690089908 0.248580401149356 0.245290985828957 0.242974708695786 0.243332242040219 0.238475478088544 0.247384213215990 0.238367010750211 0.236157168894244 0.237450913586629 0.244224621494746 0.244087125050491 0.237636508526938 0.235765202125681 0.238600521571635 0.237094244146438 0.241558806914242 1 1 - 16438906 16439447 16439223.909 16438811 16440195 - gene protein_coding_gene FALSE TRUE AT1G43630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18740.1); similar to Protein of unknown function DUF793 [Medicago truncatula] (GB:ABE83157.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) -0.250052174178204 -2.15260467613547 0.0546629888365356 1 1.31692044871381 3.88130057658517 -0.250052174178204 0.137277740150253
AT1G54790_at 0.199405611623362 0.473820509199442 0.385348153197773 0.404846824718271 0.924923187519809 0.319222057848015 0.820974458921025 1.11451546718735 0.933723451463183 0.58392773111224 1.31983870893767 1.68627813959181 1.29036405755968 0.900897063621609 1.81219331356266 1.02375622519046 1.44788655706049 0.965880843428556 0.531796981009735 0.244869603881202 0.245716637879917 0.245629709852136 0.25075245423962 0.238878596135656 0.250014378888143 0.256377107095635 0.251055591870150 0.250009166481508 0.238878596135656 0.238878596135656 0.251419135257040 0.245624393350474 0.246506168866935 0.241302947920909 0.238878596135656 0.250962607931747 0.243728548522059 0.238923987365789 1 1|0 -|/ 20444823 20445519 20445094.2 20444722 20447696 - gene protein_coding_gene FALSE TRUE AT1G54790.1|AT1G54790.2 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G05180.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABD32376.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.239571759922784 2.15255684441162 0.0546675222677655 1 1.3168495004631 1.5749001595173 0.239571759922784 0.125833937324967
AT2G25710_at 6.67391750611584 6.73513048220221 6.706112817442 6.71266689508751 7.21363133628911 6.89199469488106 7.1381074307681 6.95661828244742 5.0600841782402 5.78388086652481 5.88929617598162 6.0793470161374 5.85140069398235 5.97506456025489 6.11439311008843 6.1439374527188 5.84180942263198 5.16650572583551 5.65680082114665 0.232650428256921 0.234632468288078 0.231125203709686 0.231622592004029 0.231125203709686 0.236777113151817 0.234806114090200 0.237021589047452 0.255353621770055 0.242725521844522 0.242109211935218 0.236009000062241 0.240451595632127 0.236569132560831 0.235792574345609 0.231125203709686 0.242295803219102 0.239656231965834 0.241746893167888 2 2|0 +|/ 10960656 10961933 10961149 10959639 10962455 + gene protein_coding_gene FALSE TRUE AT2G25710.1|AT2G25710.2 HCS1 (HOLOCARBOXYLASE SYNTHASE); catalytic Encodes holocarboxylase synthase. similar to holocarboxylase synthetase 2 (HCS2.d) [Arabidopsis thaliana] (TAIR:AT1G37150.2); similar to Os02g0167000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046003.1); similar to putative holocarboxylase synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD26236.1); contains InterPro domain Biotin protein ligase, C-terminal; (InterPro:IPR003142); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143); contains InterPro domain Biotin--acetyl-CoA-carboxylase ligase; (InterPro:IPR004408) 0.193810995804090 2.15221547838641 0.0546998868951786 1 1.31634317182586 12.5700097098247 0.193810995804090 0.0647923743451409
AT4G17590_at 1.03048940760054 0.848628510607888 1.06720997866236 1.19396577451412 0.722565531711241 1.25838849586503 1.26655253530720 0.900362982920679 1.63113405797546 1.66261206330120 0.915766208939234 0.79484375048999 1.16499489412205 1.0418720910752 1.26796723988816 1.07160829139037 1.05693823960961 1.3259003993809 1.49269271441218 0.180076059228042 0.176745842151624 0.174119700173162 0.184456879570007 0.177341897921587 0.183166590383349 0.180361626259396 0.178697180840733 0.175186900251009 0.180042656107201 0.182354880644966 0.174119700173162 0.182301344328403 0.174119700173162 0.180855058278364 0.174642859578548 0.177782930895777 0.182443116712770 0.185199316324932 4 0|4 /|- 9801991 9802463 9802271.7 9801989 9802604 - gene protein_coding_gene FALSE TRUE AT4G17590.1 nucleolar protein-related contains domain NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING (PTHR22807); contains domain NUCLEOLAR PROTEIN NOL1/NOP2(YEAST) (PTHR22807:SF11) -0.233234568227615 -2.15219824302903 0.0547015214480019 1 1.31631760833962 2.37375340277774 -0.233234568227615 0.118683388450469
AT2G26080_at 11.6989977683885 11.8428322736032 12.1546774303736 12.2455554933819 11.8641586480083 11.9299577374983 12.8137059458787 12.9781630013866 12.6430536526297 12.8564762396494 12.6710908969353 12.3640440697888 12.7007470519112 12.6888486473226 12.3499778678560 13.0868446819061 12.7135785259378 12.7288859444207 12.7328608282794 0.0547483337498627 0.0530741296678034 0.0562540762738961 0.0523711441711125 0.0527400727236037 0.0606699888317666 0.0553336774157124 0.0540518007785711 0.0609503398073824 0.0533435793871723 0.0523711441711125 0.0523711441711125 0.0539515472818166 0.0569015925239633 0.0523711441711125 0.0523711441711125 0.0592823495299808 0.0567458146630307 0.0546116793730761 2 2|0 -|/ 11116454 11117415 11116966.333 11116081 11120906 - gene protein_coding_gene FALSE TRUE AT2G26080.1 glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative Identical to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P- protein) (GDCSP) [Arabidopsis Thaliana] (GB:O80988); similar to glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative [Arabidopsis thaliana] (TAIR:AT4G33010.1); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:P26969); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49954); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49850); contains InterPro domain Glycine cleavage system P-protein; (InterPro:IPR003437) -0.182982724712532 -2.15196418840101 0.0547237231283468 1 1.31597046541089 24.8945722627879 -0.182982724712532 0.0425034481098548
AT3G50380_at 6.75656152645867 7.19663293377415 6.88345281276533 6.45405164997483 7.30404789081051 6.82628645592833 7.17709416659444 7.05661197745279 7.5935540125417 7.20911829669546 6.99251026157134 7.77400339030526 7.12870461212786 7.59557933550425 7.01708359975552 7.54635382260378 6.82657901648367 7.08262380564308 7.8883802061187 0.196883448356013 0.190645439477792 0.195205402397615 0.197376451897335 0.186955105369655 0.204835269943538 0.195153581800119 0.186371131463000 0.202805079584575 0.192400470435663 0.196097834174377 0.183625924184044 0.186692907664183 0.191635011130528 0.194359191044704 0.188490374307936 0.208005670410275 0.191699568466747 0.189580679669921 3 0|3 /|- 18697561 18698043 18697748.1 18697424 18711514 - gene protein_coding_gene FALSE TRUE AT3G50380.1 similar to Os12g0594200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067177.1); similar to vacuolar protein sorting-associated protein vps13 [Asper (GB:XP_751674.1); contains InterPro domain Vacuolar protein sorting-associated protein; (InterPro:IPR009543) -0.249009944993103 -2.1510556543598 0.0548099849816042 1 1.31462307727197 14.3613993778622 -0.249009944993103 0.136353474757193
AT4G14950_at 5.05896420880228 5.2447597566256 5.60213543915712 5.32828424128188 6.09597612639182 5.4219452750202 5.66553977566854 5.65483150369346 4.77377722306904 4.44705201248777 4.94870073242573 4.5188987761871 5.23462959313687 4.93085055470975 4.95980066207001 5.11673777373838 4.45189831413903 4.85670176808026 4.57146068235562 0.206590470819321 0.217767262896193 0.212283064378213 0.216368409639293 0.213208991363077 0.215479724679069 0.209438097021383 0.206924807564577 0.231486165634879 0.21970819476155 0.205841935806359 0.207819101423130 0.218534151025992 0.213605964133751 0.208713642641245 0.213086501595757 0.228446380310217 0.206845594083926 0.209199534539639 4 4|0 +|/ 8546768 8547616 8547123.3 8545167 8548051 + gene protein_coding_gene FALSE TRUE AT4G14950.1|AT4G14950.2|AT4G14950.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05360.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91712.1); contains domain VACUOLE MEMBRANE PROTEIN 1 (PTHR10281:SF1); contains domain MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED (PTHR10281) 0.24295437921935 2.14956291713338 0.0549519954239615 1 1.31240971969898 10.2464081630543 0.24295437921935 0.129957798422222
AT1G67210_at 2.68271316313945 3.04362110418088 3.23580790719650 3.42697630842677 3.58725781210212 3.78280287208198 3.24601451744424 3.13477249984524 3.29841408068888 3.43356702831675 3.27858159364068 3.37685719791884 2.96003104929134 3.27803055460131 3.62860419043289 3.38904833765225 3.54043882034982 3.04717356038962 3.42855119229509 0.222094075759096 0.223745725708734 0.224508882507395 0.220649351598995 0.223020216075818 0.226968928194661 0.228724048163659 0.22080951824668 0.237019888016674 0.227616001254496 0.232170539428527 0.220649351598995 0.226144899477872 0.224508589636701 0.224132370016957 0.223768489509772 0.223530405668598 0.228751996472935 0.223698870912283 1 1|0 +|/ 25146735 25147386 25147089.5 25144478 25147706 + gene protein_coding_gene FALSE TRUE AT1G67210.1|AT1G67210.2 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein similar to proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT5G38600.1); similar to Zinc finger CCHC domain-containing protein 8 (GB:Q9CYA6); similar to Os06g0495700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057691.1); similar to unnamed protein product [Mus musculus] (GB:BAE39170.1); contains InterPro domain PSP, proline-rich; (InterPro:IPR006568); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.203466233200206 2.14955039711153 0.0549531879845477 1 1.31239115785950 6.61709065478623 0.203466233200206 0.0806910969331864
AT3G13445_at 6.05862457568284 6.9158807172486 7.05919510768793 7.09099928400038 7.07976951572863 6.93486496959352 6.80879333211188 6.83344790499217 5.65935895953675 5.65137502071714 5.88718056412733 5.80315440515325 6.4770188576828 5.53422387474944 5.918327742969 6.01117377624557 6.30427674465762 5.56211874051986 6.08820917004214 0.247681710070509 0.241966650643626 0.246016374450309 0.239428526684422 0.237586058505684 0.237586058505684 0.237586058505684 0.242202267183622 0.246040466796088 0.248079180236801 0.244228116163876 0.237586058505684 0.242197939994287 0.266182488656683 0.251145597597477 0.239233167197070 0.2433889339507 0.248216743006323 0.240056357017508 3 3|0 +|/ 4380357 4381733 4381175.857 4379803 4382231 + gene protein_coding_gene FALSE TRUE AT3G13445.1|AT3G13445.2 TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding / RNA polymerase II transcription factor TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex Identical to TATA-box-binding protein 1 (TATA-box factor 1) (TATA-binding factor 1) (TATA sequence-binding protein 1) (TBP-1) (Transcription initiation factor TFIID TBP-1 subunit) (TBP1) [Arabidopsis Thaliana] (GB:P28147); similar to TBP2 (TATA binding protein 2), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT1G55520.2); similar to TATA-box-binding protein 2 (TATA-box factor 2) (TATA-binding factor 2) (TATA sequence-binding protein 2) (TBP-2) (Transcription initiation factor TFIID TBP-2 subunit) (GB:P50159); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain TATA-box binding; (InterPro:IPR000814); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295)|Identical to TATA-box-binding protein 1 (TATA-box factor 1) (TATA-binding factor 1) (TATA sequence-binding protein 1) (TBP-1) (Transcription initiation factor TFIID TBP-1 subunit) (TBP1) [Arabidopsis Thaliana] (GB:P28147); similar to TBP2 (TATA binding protein 2), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT1G55520.2); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain TATA-box binding; (InterPro:IPR000814); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.262278604120759 2.14826939135035 0.0550753367977057 1 1.31049217081825 12.7161129533950 0.262278604120759 0.150617694267701
AT3G28620_at 0.872907648976313 0.701345050481295 0.929242353311122 0.914130381611234 1.31753039183898 0.853197216190805 0.482843600632272 0.630443114467225 0.776342928533182 0.520542646473846 0.819820144499745 0.96486955148272 0.445774279569508 0.919174330652409 1.17344628467794 0.741614129732599 0.741643545679126 1.31574683999871 1.11228199539132 0.175798233432547 0.175438746425178 0.181744672247225 0.175088830908286 0.176267420921527 0.173779626718804 0.189347904051674 0.181240876177685 0.195222354458114 0.180137639349653 0.184254104577523 0.181600551446845 0.183340247630941 0.182340943029042 0.175296767115668 0.180834376702901 0.188552663872970 0.177082742183400 0.184462080474903 3 3 + 10729100 10729619 10729372.818 10729063 10729698 + gene protein_coding_gene FALSE TRUE AT3G28620.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G43200.1); similar to C3HC4 type (RING finger) Zinc finger containing protein [Brassica oleracea] (GB:ABD65029.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.209422756792952 2.14794102038453 0.0551066897538482 1 1.31000545034325 1.68436346723168 0.209422756792952 0.0894297564039853
AT4G13760_at 0.74725429813618 0.904000198899583 0.870636390240125 0.844416021281445 0.66237408988033 0.686465453413635 0.928456293671733 0.880983172973474 1.44292119624537 1.11693070176996 0.807252696738491 0.86831611377279 1.11595891662383 0.939151614615646 1.16458921231220 0.81700545137406 0.757600195627368 0.870540280483789 0.963366939577716 0.174586640341469 0.178773415968141 0.175869727320228 0.181545275373309 0.187547850776863 0.174808372736900 0.176420628102428 0.179278637528365 0.185968966350451 0.176847714002667 0.176970397644950 0.186980710004965 0.183505891144309 0.181050459531508 0.181182265446121 0.179036315845692 0.179212105475395 0.179732561368459 0.179140282977900 4 4 + 7989005 7989595 7989336.091 7988141 7989644 + gene protein_coding_gene FALSE TRUE AT4G13760.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G15450.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G15470.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G40310.1); similar to Exopolygalacturonase precursor (Pollen allergen Pla a 2) (GB:Q6H9K0); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.178027485610260 -2.14703746222142 0.0551930493230797 1 1.30866630408772 1.86155228450767 -0.178027485610260 0.0290045378818543
AT1G76710_at 4.11633851987914 3.91440577871901 3.73695147523273 3.91748073137834 3.8069283054936 4.04314156060484 3.76214719998158 3.62510546756167 4.30035115407819 3.86146041427929 3.71366564917577 3.73218788968698 3.97418242310203 3.79295859182992 3.93720957107308 3.43715242318924 3.33635143792088 3.80837744520255 4.21850176770429 0.239702563390788 0.243252653334787 0.24501478667575 0.243568252090622 0.245121824591508 0.249987106801674 0.241366008920555 0.23770365287574 0.253755093750152 0.243690050374644 0.245510531051061 0.242016234459073 0.240478576756963 0.242455868270009 0.244399465348668 0.23770365287574 0.243564496624062 0.247074701259372 0.243342161780392 1 1 - 28794860 28795350 28795181 28794623 28797570 - gene protein_coding_gene FALSE TRUE AT1G76710.1|AT1G76710.2 SET domain-containing protein (ASHH1) Identical to Histone-lysine N-methyltransferase ASHH1 (EC 2.1.1.43) (ASH1 homolog 1) (Protein SET DOMAIN GROUP 26) (ASHH1) [Arabidopsis Thaliana] (GB:Q84WW6;GB:Q945S9;GB:Q9SRE2); similar to EFS (EARLY FLOWERING IN SHORT DAYS) [Arabidopsis thaliana] (TAIR:AT1G77300.2); similar to Nuclear protein SET; SET-related re (GB:ABE86023.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616) -0.194317078240502 -2.14654898024943 0.0552397906079042 1 1.30794241532434 7.78695327531544 -0.194317078240502 0.0665630379439524
AT2G24560_at 0.83720517661053 0.928108639245663 0.531994869450532 0.654046329656355 0.589012972661811 0.682775285463843 0.497397529745789 0.786044038586414 0.767099596617356 0.613156803907789 0.497228856549562 0.435170270618333 0.31147097285691 0.568917779420033 0.73307295014496 0.577609629490909 0.695307073660329 0.779151936071108 1.04068015670545 0.192143801395377 0.188694203148299 0.188694203148299 0.205495118850297 0.190459987832128 0.196716438616731 0.194684451380457 0.196688129254631 0.188694203148299 0.191728195258196 0.194205671341234 0.192611300842860 0.194411234066666 0.194223184736263 0.203522804553110 0.194802864295844 0.196025602430551 0.192456188662227 0.193296601127501 2 2 + 10439168 10439925 10439534.9 10438616 10440012 + gene protein_coding_gene FALSE TRUE AT2G24560.1 carboxylic ester hydrolase similar to RXF26, carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT1G58430.1); similar to Os01g0827700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044683.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88960.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.189984575273822 -2.14632836593876 0.055260912816039 1 1.30761550232157 1.37918312318348 -0.189984575273822 0.0587540786148725
AT1G32550_at 9.76999568162328 9.5892584599885 9.04151370428051 9.12451782158376 9.64597748782809 9.3003038745813 10.0042810003529 9.67665887812635 9.88849417026663 9.92971323431114 9.82363291506648 10.1643005721733 9.8124207154316 9.9519303524993 10.3213315470308 9.93111120189579 9.56051882184122 9.90245182765752 9.79094275870803 0.122682979220503 0.120313970385273 0.125935720738543 0.120743637116708 0.123377640863705 0.131274594252071 0.122998743872512 0.122374709309598 0.130366688158743 0.123739277320948 0.122868391794141 0.118196095485933 0.115629163815039 0.118505352044715 0.120092626858675 0.115198446146939 0.131900618646046 0.118551869658681 0.119531079604204 1 1|0 -|/ 11771964 11774073 11773290.4 11771746 11774167 - gene protein_coding_gene FALSE TRUE AT1G32550.1 ferredoxin family protein similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to Os03g0685000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050923.1); similar to putative ferredoxin [Chlamydomonas reinhardtii] (GB:ABC88605.1); similar to COG0633: Ferredoxin [Nostoc punctiforme PCC 73102] (GB:ZP_00109422.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.209112379925047 -2.14559132195820 0.0553315350496367 1 1.30652341234156 19.4206528461930 -0.209112379925047 0.0893173543608702
AT1G49260_at 0.95377507888393 0.898923330083575 1.32628832155502 1.56162475949998 1.26257753421150 1.40534973661405 1.67444427837741 1.24983292766302 1.41104958431064 0.896527566766251 1.36281580538629 1.17736198779266 1.50929311841872 1.43644331144203 1.18414455158148 1.40465984163213 1.32078678038515 1.49356917842415 1.11069437790695 0.176193661143146 0.170975176518876 0.181401631332727 0.180070845818659 0.183207696179062 0.176187318222952 0.173379058892970 0.177740489286045 0.184646527008789 0.181211317541600 0.177239205123764 0.173563328309232 0.172357089079280 0.179510865127943 0.170975176518876 0.172399178309050 0.177097657179752 0.174149017324768 0.184721003543056 1 1 + 18229998 18230407 18230184.636 18229538 18230635 + gene protein_coding_gene FALSE TRUE AT1G49260.1 similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1) 0.208213331553185 2.14547646546047 0.0553425481130877 1 1.30635323929550 2.54188107829978 0.208213331553185 0.0880830651482932
AT1G80380_at 9.85199592583141 10.0178762960817 9.8830588603539 9.74356820725268 10.1999860587315 9.42927471471184 10.9234978388277 10.6889316043937 10.8778974135104 10.8590436671059 11.1365620900947 11.1657458963889 10.5334729245928 10.8971169437475 11.0364673691470 11.2083369600630 10.2631146869108 10.7699127693233 10.7577083353444 0.114311737594915 0.113853133526390 0.121920278515038 0.123613566685754 0.117454628679472 0.13057845878998 0.116391373389971 0.118117086060105 0.125794378026942 0.113853133526390 0.114613119953142 0.113853133526390 0.117931502462686 0.117796788099457 0.118673617724351 0.113853133526390 0.125878811792755 0.118380423516154 0.114754955851450 1 1|0 +|/ 30223037 30224619 30224181.778 30222111 30224896 + gene protein_coding_gene FALSE TRUE AT1G80380.1|AT1G80380.2|AT1G80380.3 phosphoribulokinase/uridine kinase-related encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle. Identical to D-glycerate 3-kinase, chloroplast precursor (EC 2.7.1.31) (AtGLYK) (GLYK) [Arabidopsis Thaliana] (GB:Q944I4;GB:Q8LFL2;GB:Q9C5L9;GB:Q9C967); similar to Predicted kinase (ISS) [Ostreococcus tauri] (GB:CAL53463.1); similar to Os01g0682500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043886.1); contains domain C-type lectin-like (SSF56436)|Identical to D-glycerate 3-kinase, chloroplast precursor (EC 2.7.1.31) (AtGLYK) (GLYK) [Arabidopsis Thaliana] (GB:Q944I4;GB:Q8LFL2;GB:Q9C5L9;GB:Q9C967); similar to Predicted kinase (ISS) [Ostreococcus tauri] (GB:CAL53463.1); similar to Os01g0682500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043886.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897) -0.255906028153922 -2.14537529421555 0.0553522506854579 1 1.30620334512864 20.9462191934499 -0.255906028153922 0.144372737962548
AT4G34560_at 2.03435416173705 2.3421803820687 1.86607350964474 1.85165789294979 2.21697540574130 2.06737562020516 2.00118368884343 2.15726121835975 1.16286671113082 2.36325181309934 2.06863747729553 3.53682043374028 2.55829566786051 2.29011234583664 2.41039057484864 2.74166049527314 2.0902792497101 2.26018861374950 2.39770777860422 0.217676571048891 0.217794179963221 0.22678621540651 0.226996136451598 0.218561130632660 0.220813371149808 0.218607246753098 0.222903901796544 0.229063154902268 0.23094747907262 0.215207392235285 0.218446220351273 0.218021103053995 0.221645909389794 0.224390161766553 0.22031378320423 0.236370226793779 0.213437634798087 0.213300176677250 4 4 + 16507997 16508378 16508143.909 16507640 16508759 + gene protein_coding_gene FALSE TRUE AT4G34560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66440.1); similar to putative protein, putative [Medicago truncatula] (GB:ABE85395.1) 0.193357542030424 2.14495836619771 0.0553922521679136 1 1.30558565512908 4.30171117239412 0.193357542030424 0.0651442400857533
AT4G36460_at 1.49380259163825 2.17831283481897 1.91823491843596 2.80540266952505 1.24758823442263 1.74667188709113 1.69003296198601 2.48225535210313 2.10714212153393 2.62641798761288 1.42652637544148 1.35652471585074 2.20831725601968 1.44119861642185 1.69799662931032 1.95652653656798 1.78965229514659 1.91952622331168 2.57568573164659 0.218299737391053 0.214076898560412 0.223640147776478 0.216885707041373 0.223059567192008 0.232178543168635 0.217024174245912 0.212659425866151 0.223758281772460 0.219539194388042 0.221974524925358 0.212659425866151 0.220478562481684 0.215997117184847 0.216986598610981 0.212659425866151 0.220307112440037 0.223814609749114 0.214182905450440 4 4 - 17212666 17212981 17212826.091 17212665 17213102 - gene protein_coding_gene FALSE TRUE AT4G36460.1 unknown protein -0.371754103511788 -2.14485506419665 0.0554021675553181 1 1.30543261687841 4.02576211188927 -0.371754103511788 0.252702577269855
AT1G65270_at 8.68894011804811 8.9452026055574 8.8867074303809 8.93891203382463 9.02322587272793 8.5667952589232 8.44614589304976 8.50179954658215 7.9512894992689 7.6286912001728 8.24879165484827 8.24346715992683 8.00443517635203 8.01748828714685 8.02228610115765 7.96072237870175 7.7490542639799 8.0276329913061 7.88406689803492 0.176158643560309 0.169283118440002 0.168351130592382 0.170185603595038 0.168988400787670 0.179226146262195 0.173141962692226 0.170165705626233 0.174080061410486 0.178012654901855 0.166919941799859 0.170612487188514 0.171384013580304 0.174035619541073 0.173444327520883 0.17121767707078 0.180282717539764 0.177427064042990 0.174273457347654 1 1|0 +|/ 24246197 24248138 24247391.556 24245386 24248651 + gene protein_coding_gene FALSE TRUE AT1G65270.1|AT1G65270.2|AT1G65270.3 similar to Unknown (protein for IMAGE:6863324) [Xenopus laevis] (GB:AAH84304.1); similar to Unknown (protein for IMAGE:8320811) [Xenopus laevis] (GB:AAI24845.1); similar to Os11g0264600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067654.1) 0.210636830336678 2.14459430607507 0.0554272037849228 1 1.30504632432298 16.6775080703049 0.210636830336678 0.0915428121778762
AT1G64180_at 4.38724681096662 4.8151684270022 4.78468432519423 5.11213305105163 5.61087553721147 5.25459676352334 4.67721428305685 4.90896866918409 3.9017002946808 4.78928364738334 5.15037677275976 4.31335981466614 4.70567903451742 4.50282818986408 4.18387280237855 4.50901299191089 4.64404142041905 4.24149074019238 4.98860266598598 0.218170917383509 0.217081993131212 0.220339443138562 0.220060641393882 0.223342146173939 0.236790264475395 0.222063398132581 0.228266840878802 0.230221763563951 0.221535268186288 0.219314815295238 0.217081993131212 0.217081993131212 0.218426792639802 0.219264971610769 0.217081993131212 0.230159877104227 0.217081993131212 0.232297455760465 1 1 + 23827267 23827813 23827553.909 23825179 23828022 + gene protein_coding_gene FALSE TRUE AT1G64180.1 intracellular protein transport protein USO1-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41620.1); similar to unnamed protein product; gb|AAF24581.1 gene_id:MBK23.17 strong similarity to unknown protein [Medicago truncatula] (GB:ABE79740.1) 0.232446694923945 2.14428212825916 0.055457191121713 1 1.30458387895062 9.48945844515976 0.232446694923945 0.118764458905601
AT1G60800_at 8.16599966530786 8.20892981427104 7.0617909134157 7.24333264573339 8.26341112950945 7.96032229473651 8.3432531054886 8.52583626470996 8.46011012142814 8.74987736474051 8.90431470144597 9.10626544986634 9.16986997008347 9.26287777890908 8.72856778777828 9.0725633356623 8.67960706209186 8.57301150931291 8.7388091605007 0.151340471043575 0.151802735144022 0.176439812464452 0.172015652089464 0.148256408143589 0.165715668896047 0.152569955228457 0.152019572852455 0.150624523641887 0.150062144338542 0.146876338683676 0.147087306823057 0.146876338683676 0.148307909141201 0.150935108208605 0.14737546594534 0.153716883282611 0.164515117668787 0.152905742059778 1 1 - 22387329 22388084 22387699.455 22387118 22391122 - gene protein_coding_gene FALSE TRUE AT1G60800.1 NIK3 (NSP-INTERACTING KINASE 3); kinase similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.1); similar to leucine-rich repeat receptor-like kinase [Ipomoea batatas] (GB:BAD18102.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.195627324712472 -2.14373358195919 0.0555099210005829 1 1.30377134506423 16.764976269955 -0.195627324712472 0.0692218330891437
AT2G26850_at 0.886472236716192 0.755855039595937 1.07448820589498 0.807728394960477 0.516835581832106 0.722391677759281 0.930242615450994 0.82311916647476 1.39369831467775 1.52472200526275 1.15380811216916 0.850166184551143 0.637056938225591 0.887439653360326 1.14326631250729 0.763280173196125 0.742250216751396 1.24625065706270 0.819255880939369 0.226564686178065 0.223490252607894 0.229813233488897 0.234700338900221 0.226421729909220 0.225969865778065 0.235255109025418 0.222155873763201 0.230534003258344 0.222155873763201 0.229641347253562 0.225044860092907 0.231544453568915 0.229689572496189 0.222155873763201 0.226577120829972 0.229618375918535 0.224527287117974 0.225496540969718 2 2|0 -|/ 11456448 11457495 11457185 11456347 11458317 - gene protein_coding_gene FALSE TRUE AT2G26850.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G32560.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABD33039.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.193256792714875 -2.14348458076197 0.055533872346481 1 1.30340253597272 1.90155753880455 -0.193256792714875 0.0652006017969264
AT1G30800_at 0.277242739207441 0.271268814424462 -0.235085406334373 0.402343660293704 0.549919870630723 0.296229309105516 0.64493873983753 0.655712915072351 0.922498023945868 0.93887603993436 0.668515134236109 0.64986360938065 0.678011984717058 0.576495264074457 -0.0407525434473701 0.313817721950338 0.635642860938277 0.272318020582277 0.313468842863648 0.222717095144435 0.217684682821204 0.225938713754852 0.228400776815268 0.222063530565646 0.221771990548331 0.222404660019781 0.225523678073981 0.241495127271693 0.222274052344145 0.221080126687579 0.225963868997378 0.224917065908818 0.234355890466130 0.23410762185801 0.220447774693633 0.240457491984160 0.234497223712587 0.225958448948935 1 1 + 10937110 10937629 10937356.273 10936905 10938081 + gene protein_coding_gene FALSE TRUE AT1G30800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29980.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.232323786369435 -2.14330670162718 0.0555509884946394 1 1.30313907870019 0.954914651347302 -0.232323786369435 0.118744567815601
AT2G43050_at 3.15574271154122 2.86308341662295 3.19369893195643 3.28944312942535 3.22365089624412 3.23861812172472 3.03188641481298 2.87204013708208 3.4628861705033 3.02500920920225 3.56318937455127 3.62557764307041 3.42685471951161 3.25273340543876 3.23344954073968 2.95935678808833 3.68051722115222 3.27425504377857 3.26781578146385 0.186723697924952 0.185065089960959 0.182881802673553 0.18232764958206 0.176476528851308 0.177822205026611 0.176476528851308 0.177485720503610 0.183214887262922 0.177854151370894 0.183975542063814 0.186439308342803 0.178968999687508 0.179085241281383 0.185583897314019 0.187701479066368 0.182518715809104 0.178832661880296 0.179280744406472 2 2 + 17910678 17911213 17910881.636 17909561 17911520 + gene protein_coding_gene FALSE TRUE AT2G43050.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G59010.1); similar to putative pectin methylesterase LuPME1 [Linum usitatissimum] (GB:AAK69695.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.190376298237201 2.14275537927141 0.0556040704856638 1 1.30232256185553 6.42296818864181 0.190376298237201 0.0600954003463678
AT1G12800_at 10.2884008798725 10.2418312913597 10.1043864038518 9.87552700107808 10.6296711689629 9.89131433708052 11.0987062598156 10.8041353460347 11.077861934853 11.0348173706776 11.0829065842284 11.2697152890857 10.8173147336403 10.9971536386401 11.2358337194761 11.0624453147306 10.5068438506477 11.0298174906793 10.9666114590550 0.0790835433749756 0.076301251990356 0.0837543827628702 0.0782842625072966 0.0774618480123249 0.0821180090612981 0.0762813155726206 0.0768631897833509 0.0815588668662409 0.0762813155726206 0.0762813155726206 0.0762813155726206 0.0762813155726206 0.0783609567952661 0.0775924527275916 0.0764774502560392 0.0827523779911047 0.0794317632208112 0.0777902348714447 1 1|0 -|/ 4361958 4362930 4362528.429 4361549 4365329 - gene protein_coding_gene FALSE TRUE AT1G12800.1 S1 RNA-binding domain-containing protein similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G23700.1); similar to putative ribosomal S1 protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07358.1); similar to Os02g0115600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045672.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.254610071874068 -2.14240171923595 0.05563814666737 1 1.30179882432825 21.3800886272584 -0.254610071874068 0.143383719523083
AT3G09410_at 5.22966036847384 4.87658822701696 4.9043514008287 4.99346153778108 5.22311817981016 4.72547644513125 4.74196427635244 4.35594686193873 4.08521175083235 4.13059100122546 4.35267389988303 4.76877590171822 4.80362845312305 4.74196081689391 4.1911669634647 4.48681764883534 4.60935261345461 4.86902643458274 4.64397973956282 0.16676599001457 0.163681810200348 0.172184399229461 0.170710625297923 0.164549459560863 0.166743632128587 0.163122526344203 0.165084479715363 0.169467634649983 0.165772206986764 0.163624335602922 0.165894263528877 0.161405522283886 0.164040802258821 0.161919127821296 0.161567496637355 0.166931750076562 0.162739886378101 0.163183929662189 3 3|0 -|/ 2895015 2899418 2896969.4 2895015 2901025 - gene protein_coding_gene FALSE TRUE AT3G09410.1|AT3G09410.2|AT3G09410.3 pectinacetylesterase family protein similar to pectinacetylesterase family protein [Arabidopsis thaliana] (TAIR:AT5G23870.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34283.1); similar to Os01g0974500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045555.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963)|similar to pectinacetylesterase family protein [Arabidopsis thaliana] (TAIR:AT5G23870.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); similar to Os01g0974500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045555.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) 0.238446567531605 2.14193933457761 0.0556827287039902 1 1.30111412107488 9.32608066485064 0.238446567531605 0.125897392082231
AT3G16890_at 2.45102485136497 2.96625575281252 2.22669535253875 2.35378251499184 2.3741928713102 2.48604804129785 2.65496401855405 2.56597386548375 2.61970282375017 2.67057563532786 1.91166373987376 2.39528899436382 1.76428472098403 2.89656065623992 2.47252268517494 2.62835770795562 2.44883729980104 2.46889530954313 2.20942296943543 0.219726000460140 0.215636648436130 0.229148973848644 0.205076719454778 0.205076719454778 0.211019808930627 0.212964690238733 0.217092168355458 0.211439006012894 0.206953067289409 0.209744076557110 0.208441597885028 0.214190464111346 0.211806751707569 0.205767638223643 0.205560774097279 0.213398381851017 0.215798861983204 0.215193724099630 3 3 - 5768407 5768982 5768720.909 5768407 5770386 - gene protein_coding_gene FALSE TRUE AT3G16890.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99576.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.212987006974144 -2.14153638588343 0.0557216077292727 1 1.30051747300619 4.94646809125083 -0.212987006974144 0.0951084336377727
AT3G02710_at 6.39805205639551 6.4779152566063 6.86306700255006 6.4379548365377 6.6488876746604 5.86372795917516 6.51426034769973 6.51780389846361 5.53351780192598 5.56421132787347 4.69848115786422 4.60056267222056 5.14921408241616 4.81791996771295 5.15149632945196 5.33219323859612 5.54630698474199 4.80275204109111 5.46366016545281 0.196150647235130 0.206836794143432 0.210975186547712 0.196726328428526 0.198971838788143 0.209256840059172 0.199283476533846 0.195711519394917 0.205320569490331 0.199538416633497 0.203940526868833 0.198860536270873 0.201919277474913 0.201994578912612 0.206706977433245 0.200685687278494 0.213793716718723 0.198125370574461 0.203185823652964 3 3 + 583959 584907 584302.2 583120 585955 + gene protein_coding_gene FALSE TRUE AT3G02710.1 nuclear associated protein-related / NAP-related similar to PREDICTED: similar to CG11964-PA [Apis mellifera] (GB:XP_393169.1); similar to Os02g0831300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048618.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Protein of unknown function DUF1716, eukaryotic; (InterPro:IPR013180); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.265847905357999 -2.14136809571150 0.0557378530547942 1 1.30026829649458 11.7316230828507 -0.265847905357999 0.155131399530095
AT1G73670_at 7.82554914980881 7.83956362580486 7.79842409799798 7.63846863316439 8.24896777891812 7.81222620726416 8.86100393281006 8.81342791338733 8.42972330924378 7.36009168556944 7.83779613222155 7.49624654658518 8.4871462318239 8.29446276689223 7.25674669550761 7.75932291644601 7.79174912433086 7.93976641513065 7.61965004219847 0.192318598242495 0.178416519239208 0.186719738761948 0.186288347449578 0.182587411956585 0.191187659353329 0.180755944345751 0.190760231611008 0.186212761544585 0.186118792938647 0.178355910727223 0.181706100798775 0.181683390150354 0.178355910727223 0.192669643615719 0.178796161173658 0.190931510840263 0.184326209483103 0.178927660689505 1 1|0 +|/ 27704738 27705870 27705273.444 27703711 27707101 + gene protein_coding_gene FALSE TRUE AT1G73670.1 ATMPK15 (Arabidopsis thaliana MAP kinase 16); MAP kinase/ kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 15 (EC 2.7.11.24) (MAP kinase 15) (AtMPK15) (MPK15) [Arabidopsis Thaliana] (GB:Q9C9U4;GB:Q94EY5); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to MPK9 (MAP KINASE 9), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G18040.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to double HA-tagged mitogen activated protein kinase 15 [synthetic construct] (GB:ABG54342.1); similar to double HA-tagged mitogen activated protein kinase 8 [synthetic construct] (GB:ABG54335.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.202807442418290 -2.14078112698611 0.0557945493147687 1 1.29939926270061 15.9352337253717 -0.202807442418290 0.080946091797487
AT3G62710_at 0.727149884595561 0.636044501653142 1.30466493597438 1.31107857943514 0.523949028517133 1.05509427786377 1.07388492645735 1.16322393398267 2.13355958118130 1.09338749910543 0.871134303900254 0.58892056497078 1.01294303011072 0.688719169315311 0.381455625525158 0.810370637382052 0.884080295309587 1.14891831432737 0.88831495209008 0.208414834331381 0.21768437813184 0.213475624143029 0.212538296711649 0.211470753515152 0.215649223101719 0.214881541067658 0.210390515137274 0.228136326641401 0.217458974209222 0.219214914981597 0.209407731987294 0.217210585441177 0.217491612362727 0.221536292281104 0.209033345842178 0.215422122805152 0.208276753462667 0.209780854510069 3 3 - 23208765 23209480 23209000.364 23208634 23211611 - gene protein_coding_gene FALSE TRUE AT3G62710.1 glycosyl hydrolase family 3 protein similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20950.2); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G20940.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G04885.1); similar to exoglucanase precursor [Zea mays] (GB:AAF79936.1); similar to beta-D-glucosidase [Tropaeolum majus] (GB:CAA07070.1); similar to beta-D-glucosidase [Gossypium hirsutum] (GB:AAQ17461.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.212407687205845 -2.14001118891704 0.0558690019166229 1 1.29825946025450 2.05942213525860 -0.212407687205845 0.0945388710786806
AT3G16600_at 1.25319010627864 1.57430568394307 1.83751220399184 1.38224321174673 1.43407244133938 1.05770886981713 1.60200719978602 1.52902690487856 2.38619222417741 1.97064193469244 1.85141678131550 1.57010241104388 1.27336387826918 1.61460039267424 1.35564084231140 1.21322436374198 1.85301369717861 1.54962316882864 1.44610781055050 0.202603157786903 0.202603157786903 0.205082871646647 0.208393493573933 0.213958493833594 0.202603157786903 0.20609009793807 0.206452678512201 0.204698485497887 0.207117131483594 0.210136807060584 0.206102532223121 0.210931694628259 0.204946310699057 0.211154105277938 0.208733915446343 0.206804037449515 0.202603157786903 0.205869853794257 3 3|0 -|/ 5652929 5653590 5653268 5652845 5655676 - gene protein_coding_gene FALSE TRUE AT3G16600.1 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G50410.1); similar to H0323C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68165.1); similar to Os04g0629300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053966.1); similar to Os08g0180300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061138.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.230469544942081 -2.13974205008551 0.0558950497433948 1 1.29786106566735 3.19347691858628 -0.230469544942081 0.117034187554618
AT1G79220_at 2.15462188485517 2.40419509437061 1.63236053405888 2.13866652030760 2.20148704003463 2.30398763624685 2.01641170559909 2.39092813051264 2.75750047744970 2.72757712718836 2.59609070001995 2.42745283615912 2.3663201882807 2.23431764634322 2.41283092318732 2.24547419476269 2.06865807677378 2.56934404839276 2.48352518455969 0.212972411694447 0.214866268910374 0.217584672201490 0.21245288594854 0.211390521341484 0.217223884394934 0.216274130424614 0.217554889840973 0.220378800806757 0.212350504912355 0.222476316414822 0.215785885168035 0.211390521341484 0.225746610382269 0.214730228756805 0.211390521341484 0.220649673683331 0.212088412006605 0.219890730184074 1 1 + 29804730 29805218 29804971.818 29803828 29805418 + gene protein_coding_gene FALSE TRUE AT1G79220.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT5G64950.1); similar to mitochondrial transcription termination factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15633.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.231776812082515 -2.13968954744304 0.0559001324044226 1 1.29778335030906 4.66596332148445 -0.231776812082515 0.118564732987117
AT2G38410_at 5.87265397255012 6.32032259028038 6.02028594038771 6.63104244773778 7.27818590890288 6.90848227469151 5.7449619565025 5.47983247193813 5.95252210789029 5.39025241025906 5.0025416142026 4.84047378308477 5.2143297230396 5.50902026428101 4.54285756130528 5.70019090581861 5.65497635581486 5.58502795157629 5.41039965054519 0.204803158335363 0.201035329988009 0.213471805354465 0.211094109726054 0.212693495189028 0.212841959816607 0.206241127117713 0.208463874989205 0.216332529080458 0.206399239218645 0.208362455514502 0.209222168724767 0.207358005811334 0.20837945552047 0.206538762077447 0.200996398098742 0.221990642707333 0.202999869662258 0.205274678835029 2 2 - 16094130 16094557 16094321.818 16093708 16097286 - gene protein_coding_gene FALSE TRUE AT2G38410.1 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G01760.1); similar to Epsin, N-terminal; GAT; ENTH/VHS [Medicago truncatula] (GB:ABE88894.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.263421137718860 2.13960883589129 0.0559079467614648 1 1.29766388091077 11.7022552751015 0.263421137718860 0.152877426714969
AT2G16230_at 1.23149507557140 1.30885412978988 1.52113696301904 1.45888024940535 0.873978441685505 1.08446829196454 1.34274498616282 1.24789179219699 1.73391316941016 1.63116133363949 1.23256729806869 1.33943755898293 1.18899386475989 1.22907594600246 1.64997876487169 1.36753317057763 1.61158549989328 1.37000460860164 1.70540139130422 0.207301418999122 0.201617313186575 0.197853892073106 0.197853892073106 0.213038050104327 0.199389459313782 0.203591081423418 0.202838780158186 0.205313711169551 0.213548604983205 0.201250413353999 0.203417902424054 0.201657608169438 0.204052405551527 0.197853892073106 0.203178763980604 0.206158241082216 0.208388021700157 0.20613165408787 2 2|0 -|/ 7043108 7043809 7043510.2 7043103 7045408 - gene protein_coding_gene FALSE TRUE AT2G16230.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G34480.1); similar to beta-1,3-glucanase-like protein [Olea europaea] (GB:AAK58515.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.18232102594659 -2.13956021081278 0.0559126550606527 1 1.29759190673184 2.79058410143497 -0.18232102594659 0.0434926781451441
AT1G35150_at 0.684090548459928 1.01046340408167 0.85544315791455 0.901606067476417 0.689911467555413 1.00939551694690 1.19997365764998 0.938048407065612 1.40801130294673 1.09397283747017 1.14157535724289 0.94190570955263 1.17545935036558 1.04735236196761 1.07227774088610 1.02116370188070 0.603169759131022 0.91878205480708 1.44686034296176 0.170675235216523 0.172939996668453 0.175043819098886 0.172298930395508 0.17478428750024 0.171273994372645 0.170675235216523 0.170675235216523 0.178837230772970 0.17426935656364 0.172398511248136 0.172238555295135 0.174126627493325 0.170802504560019 0.170675235216523 0.188692562741641 0.173228605529294 0.176463544553294 0.180256700584704 1 1|0 -|/ 12864163 12865224 12864526.9 12864136 12866216 - gene protein_coding_gene FALSE TRUE AT1G35150.1 similar to hAT dimerisation domain-containing protein / transposase-related [Arabidopsis thaliana] (TAIR:AT2G06500.1); similar to Os12g0565800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067048.1); similar to Os02g0236500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046391.1); similar to hAT family dimerisation domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98982.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.210062845910666 -2.1393569346404 0.0559323420886888 1 1.29729102628540 2.06436265286319 -0.210062845910666 0.091461501789382
AT4G32375_at 0.891029212823762 1.09287526811915 1.67464917655214 1.40604662858961 1.01022883972881 2.03251231612655 1.03470231976099 1.34947094080835 1.32813350157437 1.22429238445620 1.61704865980152 1.91839466754314 1.75190057566217 1.35583768944016 1.04194127968489 1.27375797764689 1.29935783999728 1.49671222093004 1.33883491729871 0.212436023822687 0.207973039402651 0.219007856035423 0.216974131871830 0.215813134247322 0.215135449255986 0.207973039402651 0.215130029576104 0.229174495399243 0.232391744281374 0.207973039402651 0.209537225495573 0.208836677016306 0.215440994164225 0.215828902569684 0.215377813066308 0.222073236872787 0.226932141365212 0.211913938058388 4 4 + 15631142 15631570 15631383.182 15628879 15631602 + gene protein_coding_gene FALSE TRUE AT4G32375.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G32380.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE91571.1); similar to Polygalacturonase (pectinase) [Medicago truncatula] (GB:ABE90292.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.305560867133191 2.13909634486928 0.0559575894897463 1 1.29690532735341 2.69466723695435 0.305560867133191 0.194024452267278
AT2G26880_at 2.16752498380065 1.88146206441094 1.74284543696620 1.87102425562169 1.61346480979535 2.00382639312587 1.83506364131806 1.69318517787119 2.29342036800469 2.32252680387945 1.62472905718584 1.74349986090142 2.15942546852809 1.98898623810404 1.76402035990264 2.02415925994466 1.52725109126326 2.50313418491502 2.12896897407447 0.195467703132930 0.193385199243882 0.195320919664027 0.194912443470607 0.203044792342928 0.192622391904220 0.203586282462218 0.195879039882135 0.197135687652700 0.197345865608795 0.194335750423350 0.196259785486866 0.203523598052805 0.198226085716975 0.199172126083098 0.194838028019543 0.196338607266115 0.198806127973608 0.201722865455659 2 2 - 11467301 11467922 11467560.1 11466984 11468177 - gene protein_coding_gene FALSE TRUE AT2G26880.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT2G40210.1); contains domain UNCHARACTERIZED (PTHR11945:SF1); contains domain MADS BOX PROTEIN (PTHR11945) -0.208961717433008 -2.13861001965177 0.0560047363514635 1 1.29618556121692 3.93365263140341 -0.208961717433008 0.0900505482559306
AT3G51570_at 0.884268151516744 1.42507134344253 1.04995671698871 1.34837630182367 0.787413691249081 0.94715043394187 1.01545471632260 1.11261841491820 1.77866231529937 1.80045421310826 1.13662129396353 1.19932228051982 1.39621909853042 1.23887182795454 1.38093676378725 1.04435212024011 1.07684955017966 1.14690898537774 1.15419709614675 0.220765428617290 0.216713610727561 0.220355011420273 0.222117137778426 0.216713610727561 0.21964141087374 0.216747151992759 0.221082955909307 0.221435863029165 0.217878321621927 0.220077938497680 0.219728370056905 0.223284915565091 0.228267749873624 0.231336685310708 0.219926157042987 0.221564174418177 0.226806128522004 0.225299963273957 3 3 + 19140732 19141397 19141070.727 19137337 19141435 + gene protein_coding_gene FALSE TRUE AT3G51570.1 disease resistance protein (TIR-NBS-LRR class), putative similar to CSA1 (CONSTITUTIVE SHADE-AVOIDANCE1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G17880.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45060.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.225694919332424 -2.13728136798521 0.0561337349945369 1 1.29421943495475 2.46142944540239 -0.225694919332424 0.111681139665269
AT3G27260_at 8.9212329413988 8.67145086337384 9.27942162931118 9.02889275414061 9.30936790610671 9.27088182817253 8.8903881105293 8.47900808015154 8.66762045867601 8.92542857986355 8.97008246949405 8.6743415467418 8.8659940450063 8.66580696473381 8.51075464006652 9.03698636554024 9.104215048661 8.89583127372085 9.10268729370872 0.099754262856381 0.0995676694849518 0.103049094191890 0.102898494036363 0.104613289233097 0.106523244476224 0.107324606692788 0.103445962602500 0.114344093556990 0.100125358903275 0.099903208279495 0.100322251035286 0.0992379457148522 0.104594976324205 0.101395956863439 0.0967120466098855 0.0967120466098855 0.102137470839869 0.0967120466098855 3 0|3 /|+ 10073142 10073596 10073401 10068875 10073898 + gene protein_coding_gene FALSE TRUE AT3G27260.1 GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain similar to ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G14270.1); similar to putative bromodomain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08859.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.211771898699435 2.13667309695298 0.0561928860405827 1 1.29331946372188 17.8508706749789 0.211771898699435 0.094131320075117
AT2G29180_at 7.56428447558665 8.04511784718264 6.53436746509881 6.40874342322897 7.96811250035599 7.76857522772653 7.913288622978 8.16193703867389 7.27257622278937 7.85869685399596 7.79011021973602 8.0909283520772 7.71446422230972 7.816418866209 8.41182712163385 8.22780394836853 7.79769491597892 7.42529926222205 7.65064769824364 0.205821566674055 0.186936936666191 0.204228102698428 0.195879463884659 0.203588255672353 0.200764320109304 0.197734840425371 0.195561566254895 0.209666273766184 0.194505976863999 0.193922615314082 0.189077658778981 0.196411609886849 0.197911810200655 0.196719863178708 0.186150142329035 0.202508132209583 0.192901190186003 0.205191707066895 2 2 + 12550178 12550753 12550396.1 12550100 12550912 + gene protein_coding_gene FALSE TRUE AT2G29180.1 similar to 80C09_19 [Brassica rapa subsp. pekinensis] (GB:AAZ41830.1) -0.217931285056065 -2.13656770277101 0.0562031410630048 1 1.29316353620585 15.2971993027256 -0.217931285056065 0.102178966548951
AT1G78110_at 2.68758826233936 2.85956063312077 2.41860671149938 2.52214059722497 2.8622935877889 3.14554587579054 3.03473512676236 3.05507188876530 3.68549987788051 3.92023558244661 5.27936236327915 5.12818104102510 4.00864460319133 4.45267203316875 4.48905270957152 5.07785929550533 4.02222567781704 4.24587890809165 4.50286215412172 0.225301526659823 0.226518905067772 0.238986229383073 0.231918849163869 0.233078266468523 0.225301526659823 0.225624778196646 0.226931979478637 0.234844260505986 0.22645244924351 0.231492499339467 0.227030184227631 0.226151514339378 0.227783102478358 0.233849198267189 0.231291447026530 0.230478504870901 0.229160452145270 0.225301526659823 1 1 + 29397231 29397768 29397471.091 29396720 29398227 + gene protein_coding_gene FALSE TRUE AT1G78110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22230.1); similar to Os09g0370000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063016.1); similar to Os02g0753400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048146.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15567.1) 0.189846544734477 2.13627454493625 0.0562316751325806 1 1.29272983218124 7.1352847272977 0.189846544734477 0.0601820339776178
AT3G24360_at 1.12835792838580 1.55657965919416 1.40338486727127 1.61710496264462 1.07856360076181 1.27125436557676 1.46587703084245 1.58580318908367 1.21214555025220 1.95178706630116 1.68167354316973 1.48070879030722 1.56380168833496 1.46379479257326 1.28854700354563 1.54805195006129 1.62294327904612 1.00657214864372 2.19151788366424 0.184290551816228 0.182179772707346 0.18556201504768 0.182273557721715 0.18324180612425 0.191726652213897 0.182972888520073 0.184240407186818 0.186341485795965 0.187217220679452 0.187532400135508 0.184690499239459 0.187008595952361 0.185843288166553 0.182987881482597 0.184049153241282 0.182802486571007 0.18214515801146 0.188383406015527 3 3|0 -|/ 8839864 8841054 8840378 8839735 8842838 - gene protein_coding_gene FALSE TRUE AT3G24360.1|AT3G24360.2 enoyl-CoA hydratase/isomerase family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT4G13360.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABE91609.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) -0.209858010045933 -2.13576296089227 0.0562815023205992 1 1.29197303361900 3.00944660856979 -0.209858010045933 0.0916637971811952
AT1G60610_at 4.11693256525518 4.21604476327713 4.63747475884017 4.61675499675887 4.67277979901221 4.72501356015322 4.43137221981009 4.3045495184081 3.52020011305648 4.53594346420894 4.09728485095452 4.02660238004461 3.98010612736848 4.10500024708916 3.79216290314506 4.28832113364158 4.50016599329738 3.90787809445866 4.32956226428118 0.218862999296813 0.219712637182585 0.245538482494002 0.221222521679971 0.215158539251440 0.226077381694397 0.220077688803343 0.217038366563992 0.223322631518351 0.213092161740173 0.213373744052855 0.215609490813498 0.216102425201445 0.226749562293611 0.229461834056876 0.211727747829302 0.213459080824690 0.212210084876603 0.218938744797282 1 1 - 22331671 22332295 22331890.364 22331577 22333941 - gene protein_coding_gene FALSE TRUE AT1G60610.1|AT1G60610.2 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G10650.1); similar to Os02g0130300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045784.1); similar to putative S-ribonuclease binding protein SBP1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07738.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.177201307202278 2.13540903279383 0.0563159986793512 1 1.29144949644091 8.57299468773877 0.177201307202278 0.029503104837923
AT3G23790_at 5.03005142503282 4.66612986263258 5.19986791699899 5.47482444917653 6.09608218643727 5.13503117476399 4.63097372980622 4.11508241988631 3.79581133105586 3.92555823973227 3.73175752170461 3.40511002413510 3.98772635841516 3.70333268647627 3.21553420789995 4.06235415927304 4.57904243792671 3.71217798342731 4.37698657289447 0.24312489787929 0.246805999291029 0.240123011950780 0.238852121500839 0.249165333587754 0.248626854280383 0.243507405656315 0.238676773200046 0.238676773200046 0.238676773200046 0.239011908638538 0.241880165228163 0.243128575717966 0.240285119683830 0.240259417372223 0.238676773200046 0.241206171619847 0.244397329588173 0.243067234963316 3 3|0 +|/ 8579556 8580532 8579923.875 8575174 8581119 + gene protein_coding_gene FALSE TRUE AT3G23790.1 AMP-binding protein, putative similar to AAE15 (ACYL-ACTIVATING ENZYME 15), acyl-ACP synthetase [Arabidopsis thaliana] (TAIR:AT4G14070.1); similar to AMP-binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99869.1); similar to AMP-binding protein [Brassica napus] (GB:CAA96521.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE90455.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.316368056842228 2.13515339734126 0.0563409272158108 1 1.29107137452778 8.95971279740924 0.316368056842228 0.204600304085519
AT3G47490_at 7.95766396574817 8.10079080441117 8.04900523024886 8.26200052128025 8.30217473928877 8.01433042157027 8.64501234876919 8.78431210163969 7.98359576267096 8.43635252184414 7.85768960321022 8.13746918456267 8.10430340010254 7.84912343884966 7.9403427960021 8.13119637833393 7.75439280377199 7.85322096398297 7.97020083555977 0.145011564561203 0.134468105458317 0.15200460906819 0.140552084417978 0.136421128958285 0.139959707134227 0.137284710229922 0.143045311747204 0.143580040464648 0.138708270787166 0.133224515526025 0.133375319870864 0.137422470543906 0.140916028055247 0.136406052023537 0.132790968721558 0.143317782064278 0.146136283365236 0.140082786829175 3 3|0 +|/ 17509448 17511682 17510477.333 17509322 17511901 + gene protein_coding_gene FALSE TRUE AT3G47490.1|AT3G47490.2 HNH endonuclease domain-containing protein similar to HNH endonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18680.1); similar to HNH endonuclease family protein [Tetrahymena thermophila SB210] (GB:XP_001023127.1); similar to Os03g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049103.1); similar to Os10g0335200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064372.1); contains InterPro domain HNH endonuclease; (InterPro:IPR002711); contains InterPro domain HNH nuclease; (InterPro:IPR003615)|similar to HNH endonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18680.1); similar to HNH endonuclease family protein [Tetrahymena thermophila SB210] (GB:XP_001023127.1); similar to Os03g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049103.1); similar to Os10g0335200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064372.1) -0.195824731317312 -2.13448317742720 0.0564063340844617 1 1.29008009742696 16.3061697805164 -0.195824731317312 0.0709547459012167
AT1G34030_at 8.80071968244899 8.88155113432216 8.29876238120015 8.38148125820577 8.94148522928694 8.02415348349434 9.35992354922167 9.22265387491265 7.52046892199304 8.22601912058708 7.84678213556348 8.78797291562687 8.03316538942816 7.8318218215549 8.83366614210866 7.82763312847674 7.73146281873532 7.63070915404238 8.11381495595736 0.174157633984969 0.170760568485912 0.175168311037023 0.167975372807336 0.170787991196480 0.175074932000005 0.173871986959946 0.177431128576895 0.199240740198515 0.170793957410789 0.181270237436328 0.167849238886566 0.173762183607362 0.171932337692542 0.174110819248423 0.169747640659060 0.209496444793096 0.195707845809732 0.170462769856977 1 1 - 12370318 12371138 12370709.545 12370045 12371530 - gene protein_coding_gene FALSE TRUE AT1G34030.1 40S ribosomal protein S18 (RPS18B) Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to RPS18C (S18 RIBOSOMAL PROTEIN), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G09800.1); similar to PFL (POINTED FIRST LEAVES), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G22780.1); similar to Ribosomal protein S13 [Medicago truncatula] (GB:ABE81204.1); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.271387058416664 -2.13320929628249 0.0565308510378544 1 1.28819628681727 16.7482593346555 -0.271387058416664 0.161759058083015
AT4G31180_at 9.89088550604118 10.0869588989523 9.95713977590682 10.0910370888264 10.1443959762498 9.88433297149286 9.56671079500292 9.37693778080929 9.69963632194582 9.27571557107492 9.76751093491852 9.40912428529284 9.41436016139456 9.69056297837174 9.45145581910005 9.63616008307771 9.47900211165726 9.63559399566417 9.40461639088851 0.101798848512958 0.0952792546372478 0.101839526737825 0.0991206757346976 0.0960089759868237 0.097193260089271 0.0929501667791746 0.0980720273085424 0.0969605711112068 0.108276940456635 0.0929551643369543 0.0929501667791746 0.0977749486092834 0.0947894308513584 0.0994942181273072 0.0929501667791746 0.094059878500682 0.0989349318587396 0.0964788186168703 4 4 + 15158645 15159314 15158980.909 15155885 15159595 + gene protein_coding_gene FALSE TRUE AT4G31180.1|AT4G31180.2 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G26870.1); similar to Os02g0686400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047770.1); similar to Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) [Medicago truncatula] (GB:ABE93908.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aspartyl-tRNA synthetase archea/euk type; (InterPro:IPR004523); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) 0.194667538066202 2.13318782637031 0.0565329518720502 1 1.28816454057757 19.3850302112374 0.194667538066202 0.0692261548052497
AT1G35680_at 11.1453246730798 11.1342192250656 10.5860258825185 10.5772515895694 10.9126155545436 10.9046286809636 11.2506929934746 11.2788709976579 11.4396116499409 11.3596683007361 11.5820577478795 11.8232757514721 11.1916191532953 11.3862172339542 12.1142540313366 11.4999027280092 11.1420808410412 11.4239196114073 11.4285687600404 0.0835923624496531 0.0832818043323976 0.0847058962511407 0.0862240894106094 0.081957475587893 0.0893921155815421 0.0852487679667694 0.085972997762398 0.0948489891147182 0.085451350584104 0.0835504160949489 0.0835115282690678 0.0840665959885643 0.0857895199182537 0.0882310951738931 0.0824115001877596 0.0882000960767188 0.0871036473970938 0.0845094786146313 1 1 + 13210081 13211420 13210641.818 13209948 13211630 + gene protein_coding_gene FALSE TRUE AT1G35680.1 50S ribosomal protein L21, chloroplast / CL21 (RPL21) Identical to 50S ribosomal protein L21, chloroplast precursor (CL21) (RPL21) [Arabidopsis Thaliana] (GB:P51412;GB:Q9SMM2); similar to NFD1 (NUCLEAR FUSION DEFECTIVE 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G30930.1); similar to Os02g0259600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046479.1); similar to 50S ribosomal protein L21, chloroplast precursor (CL21) (CS-L7) (GB:P24613); contains InterPro domain Ribosomal protein L21; (InterPro:IPR001787) -0.173006780846889 -2.13316596105235 0.0565350914729019 1 1.28813220979107 22.4385530950451 -0.173006780846889 0.00562922445753035
AT3G03960_at 7.84328228308724 7.92247984046145 7.63296066780016 7.4782931462646 7.40826266026991 7.71380033944127 7.94365319417186 8.34724113821552 7.23203784451045 7.75469183279479 7.32087971866663 8.06439099232564 7.33539240343203 7.00953723167285 8.19912330586992 7.5389795984644 7.35344221417551 7.57549872136374 7.55610215280165 0.172131666039253 0.168180640801792 0.172766159155608 0.17677994257937 0.168974113284895 0.175582604062111 0.16612879404812 0.164423728059784 0.167908213839766 0.173686108501731 0.171754643805853 0.167951955435944 0.164928872799939 0.180575084491304 0.16688898668381 0.171337490778939 0.173850710880170 0.168181888811801 0.166307362448262 3 3 + 1026474 1027577 1026873.091 1024265 1027898 + gene protein_coding_gene FALSE TRUE AT3G03960.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to hypothetical protein DDBDRAFT_0217758 [Dictyostelium discoideum AX4] (GB:XP_643258.1); similar to Os03g0804800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051623.1); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, theta subunit; (InterPro:IPR012721) -0.210228331997995 -2.13240881167867 0.0566092287060122 1 1.28701273541152 15.3182130586883 -0.210228331997995 0.0926175234380208
AT4G30840_at 1.75484057191331 2.43928437485313 2.54861759381552 3.0065473564641 1.95107644054509 1.98228726458730 1.78010655485981 2.09011968229868 1.82431452914765 1.76480430478932 1.50914550756737 1.87378583620159 1.74255332273285 1.68894520149857 1.99101103963099 1.59057386501442 1.92868492398990 2.00469877113234 1.28029376257152 0.210360856617009 0.205330117775047 0.210441694977171 0.211721433019034 0.201691934839647 0.204183817099959 0.202938532029059 0.204604802169923 0.213524792639795 0.208467912347872 0.201872539680837 0.201691934839647 0.203256047071265 0.208791559105233 0.201691934839647 0.201691934839647 0.210167544628351 0.209420081707811 0.203820887353277 4 4|0 -|/ 15017837 15019137 15018389.5 15017621 15019741 - gene protein_coding_gene FALSE TRUE AT4G30840.1 WD-40 repeat protein family similar to WD40-like [Medicago truncatula] (GB:ABE94682.1); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044) 0.26204082208664 2.13239687414248 0.0566103983231905 1 1.28699508642574 3.90126615023737 0.26204082208664 0.152371191149716
AT1G50030_at 8.44557929204514 8.639236914527 8.59917805834557 8.63635773442525 9.3122734797801 8.69648224950332 8.44945108207349 8.10354178157112 8.39215797285643 8.68214166457858 8.7731290943835 8.45290040438907 8.35003437803616 8.43288867854386 8.67271986543228 8.83501186811915 8.6695488953357 8.84333744116203 8.58702389147055 0.186173537353781 0.182781573462951 0.185170528371309 0.185300979988085 0.186556805520732 0.198576987031863 0.177868643295319 0.191555307176169 0.207544305358760 0.185859445002114 0.181195895656459 0.186533603737582 0.180880403381593 0.187400056129518 0.177868643295319 0.179958432339089 0.195134688324304 0.194368410121339 0.184538634612187 1 1 - 18526423 18526986 18526716.7 18526109 18543663 - gene protein_coding_gene FALSE TRUE AT1G50030.1 TOR (TARGET OF RAPAMYCIN) Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. similar to ATR (ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED), inositol or phosphatidylinositol kinase [Arabidopsis thaliana] (TAIR:AT5G40820.1); similar to target of rapamycin [Zea mays] (GB:AAW78347.1); similar to PIK-related kinase, FAT; PIK-related kinase, FATC; Peptidase M, neutral zinc metallopeptidases, zinc-binding site; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding [Medicago truncatula] (GB:ABE89775.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93990.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain PIK-related kinase, FATC; (InterPro:IPR003152); contains InterPro domain PIK-related kinase, FAT; (InterPro:IPR003151); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding; (InterPro:IPR009076) 0.238271215749706 2.13234714572952 0.0566152708655751 1 1.28692156609668 17.2014979929391 0.238271215749706 0.126902022932591
AT3G18500_at 9.09621792452781 9.03429255071277 9.13381984522724 8.95482506709297 9.35663963263305 8.20713331523384 10.0204905007207 9.61745476767454 8.80616065835397 9.65830304756466 9.22431957036675 9.1963520305348 9.24815394297777 9.38109796026663 8.67313599527879 9.4626020924695 9.23702678143895 9.25698796730195 9.5307392473209 0.117560475497191 0.120843286095410 0.120888330860539 0.124171637220343 0.119146181162353 0.128960287367426 0.117466520943128 0.121169332713362 0.144911920784369 0.120064700400287 0.124364871552633 0.117408915549163 0.121319269217373 0.120662879716933 0.134547549955394 0.117408915549163 0.140444284841410 0.122455132724534 0.117408915549163 3 0|3 /|+ 6354257 6355251 6354824.111 6352495 6355446 + gene protein_coding_gene FALSE TRUE AT3G18500.1|AT3G18500.2 similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G73875.1); similar to Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE91612.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.325392123014649 -2.13187937345921 0.0566611241064207 1 1.28623002376258 18.4484561306408 -0.325392123014649 0.213333410265918
AT1G60940_at 8.48730459653894 8.97461614788948 8.86387020296398 8.86940786111314 8.84211903453685 8.80449806345244 9.03741175711894 9.02785926186028 9.20920049599908 9.34979818532747 9.0996061023769 8.93040619882909 9.00164440859379 8.77293863494874 8.69397221034439 9.00195533375583 8.95368533209956 8.80279835590332 9.27849241156657 0.126036519011346 0.127867924532998 0.126806579457686 0.126459075920933 0.123933892121751 0.128512198340685 0.128184864561474 0.133375973607910 0.132136416886957 0.130353138194999 0.129864992557905 0.131314426995861 0.123371365562787 0.136007543998942 0.128740386102980 0.127348564558912 0.133581392014452 0.129766631559321 0.125896562306957 1 1 - 22443064 22444272 22443417.636 22442804 22445882 - gene protein_coding_gene FALSE TRUE AT1G60940.1|AT1G60940.2 SNRK2-10/SNRK2.10/SRK2B (SNF1-RELATED PROTEIN KINASE 2.10, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10); kinase encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. similar to ASK1 (ARABIDOPSIS SERINE/THREONINE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G10940.1); similar to serine/threonine protein kinase (GB:AAA33003.1); similar to serine/threonine protein kinase (GB:AAA33004.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.204431012929944 -2.13164380606678 0.0566842288689578 1 1.28588178728792 17.956530625553 -0.204431012929944 0.0846040519945627
AT2G04500_at 1.22424938870466 1.43650816892087 1.02083246603175 1.85476585061266 0.91098602829549 1.20329417077695 1.29806869691357 1.46746343315498 1.60376604374537 2.11246672800206 1.40302307242799 1.20299780026536 1.61301726478782 1.1575822503367 1.12502672038962 1.34538742958262 1.20315728768542 1.77197118451746 1.63063000557827 0.198084960357204 0.195757463935682 0.198631884938984 0.198811948243235 0.195757463935682 0.196563408020761 0.199558696681829 0.201136713902607 0.202378709131081 0.201274525546990 0.205827574448979 0.196427168690467 0.197312882773010 0.203773388576695 0.195860630324329 0.195757463935682 0.201370814528379 0.203587393770395 0.197710891411310 2 2 + 1569424 1569939 1569715.818 1568281 1570268 + gene protein_coding_gene FALSE TRUE AT2G04500.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G54040.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G54050.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14980.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.269310004593541 -2.13075434448948 0.0567715490558807 1 1.28456702903519 2.86955000977188 -0.269310004593541 0.159983145474847
AT3G56490_at 8.3376556908656 8.49518408752684 8.52454135655873 8.47836150435687 8.3836860944752 8.43094165650591 8.09694695398287 8.40843706065453 7.93780794732288 8.10323512205705 8.19285921070678 8.19244812975417 8.36168786849565 8.33209818393427 8.40470532950716 8.42480925386877 8.15236237814509 8.33677666499715 8.07733712151275 0.134824411960127 0.131873187817575 0.132864178243605 0.133774657330219 0.129888703006113 0.136150379815867 0.131840790272064 0.136984562565887 0.142735832611279 0.132904832481009 0.133944091993006 0.127668245699753 0.131863775546331 0.127668245699753 0.129877778854238 0.129804186027463 0.13821768047822 0.133322797861582 0.136405408189418 3 3|0 +|/ 20952511 20954079 20953298.375 20952481 20954448 + gene protein_coding_gene FALSE TRUE AT3G56490.1 zinc-binding protein, putative / protein kinase C inhibitor, putative similar to zinc-binding protein, putative / protein kinase C inhibitor, putative [Arabidopsis thaliana] (TAIR:AT1G31160.1); similar to Histidine triad (HIT) protein [Medicago truncatula] (GB:ABE83728.1); contains InterPro domain Histidine triad (HIT) protein; (InterPro:IPR001310) 0.190042509255977 2.13067098523002 0.0567797391345959 1 1.28444382139827 16.5640585211443 0.190042509255977 0.0614787377670684
AT3G15190_at 11.2011133103747 11.1891273400809 10.3687526515420 10.3433378425636 11.1469765900934 10.6293564991190 11.2495793719310 11.2150890435495 11.3363991403322 11.3989231274233 11.6109571759690 11.9038264353025 11.3134710977145 11.3659439554988 12.2172364650785 11.4391794901956 10.9445717732890 11.4495166263736 11.3299186516694 0.0932184600791236 0.0906437546696432 0.0965544845802682 0.101519009780391 0.0930928073465407 0.0995633965837569 0.0921973427903447 0.0907711380462405 0.100741505306621 0.0909308691740114 0.0894577379106832 0.0901133372513984 0.0894577379106832 0.0928805885721992 0.089773694994337 0.0913158581237196 0.0976181610565132 0.0950901691110474 0.0903345752507216 3 3|0 +|/ 5116232 5117393 5116787.4 5116148 5117622 + gene protein_coding_gene FALSE TRUE AT3G15190.1 chloroplast 30S ribosomal protein S20, putative Identical to 30S ribosomal protein S20, chloroplast precursor (RPS20) [Arabidopsis Thaliana] (GB:Q9ASV6;GB:Q9LIL6); similar to Os01g0678600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043859.1); similar to ribosomal protein rpS20 [Bigelowiella natans] (GB:AAP79183.1); contains InterPro domain Ribosomal protein S20; (InterPro:IPR002583); contains InterPro domain Ribosomal protein S20p; (InterPro:IPR010013) -0.208056899850936 -2.13041093821119 0.0568052960550891 1 1.28405947455393 22.3607506731081 -0.208056899850936 0.0899068057611057
AT1G77860_at 1.79696696772522 1.59304889960012 1.9018137254613 2.41986278018982 1.45596420890125 1.55114596938713 1.83375516208949 2.06884715475186 2.31283238653526 2.48305268347082 2.23605211497197 1.83351393328633 1.81666959209944 1.67596830081417 1.64424062228408 1.78501136302797 1.89728109551217 2.04337283924267 2.15204694153741 0.212637590177387 0.212637590177387 0.214093947946191 0.212637590177387 0.217961428486034 0.219378956689803 0.212637590177387 0.219812768554581 0.225686470643872 0.219162757197132 0.212895182754200 0.225549970869431 0.219861653979227 0.212637590177387 0.224087406303260 0.216663883526483 0.220037743964247 0.219308853590193 0.221652177351195 1 1 - 29287601 29288267 29288021.8 29287537 29289352 - gene protein_coding_gene FALSE TRUE AT1G77860.1 KOM (KOMPEITO) mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT5G07250.1); similar to Os03g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048759.1); similar to Rhomboid-like protein [Medicago truncatula] (GB:ABE86309.1); similar to Os11g0704800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068547.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -0.220210739791553 -2.13018716698562 0.0568272965950035 1 1.28372875620626 3.91892114343128 -0.220210739791553 0.105872859615266
AT2G03160_at 1.11348660284723 1.19478220373093 1.83360760482318 1.40778884199576 1.50046554592184 1.66603340614534 1.22901294381490 1.25269718456933 1.44661385687383 1.76955942626226 1.41212179003848 1.70505735043433 1.52317579025997 1.91380329668995 1.65338653943931 1.85308284116262 1.68696295100415 1.83955519946253 1.88383841218587 0.209886470272203 0.195476966534826 0.192168925845089 0.192168925845089 0.200359311146874 0.193086121569005 0.207614840568449 0.197699211208945 0.193771945962684 0.205610551387736 0.208405455135547 0.199133075873293 0.205344571699114 0.192886126636298 0.205055488322966 0.203951590955319 0.199312050902012 0.192677612381834 0.194850822428326 2 2 + 959715 960072 959894.091 959642 960244 + gene protein_coding_gene FALSE TRUE AT2G03160.1 ASK19 (ARABIDOPSIS SKP1-LIKE 19); ubiquitin-protein ligase similar to ASK15 (ARABIDOPSIS SKP1-LIKE 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G25650.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.201434218675849 2.13005762815293 0.0568400361720115 1 1.28353731239850 3.09893285085710 0.201434218675849 0.0804107118471048
AT3G20250_at 8.73463033333919 8.84344234367198 9.05396118428197 9.06927581747065 9.3947668304111 9.15273922160024 7.75208094484706 7.73846210255414 7.72050496128128 7.62477884449855 6.98963407311834 6.62335236368087 7.94118975359334 7.57236045622028 6.15428396552566 7.49809423781428 7.74352578619242 7.20311230819288 7.90805288595396 0.175954765289709 0.175850004871000 0.174729199625777 0.172208789164054 0.175501927848790 0.179369321858693 0.174738331971110 0.163670886050073 0.188353149933455 0.168875192300085 0.163670886050073 0.169216485305841 0.176361275523143 0.179545420591207 0.172278197235575 0.169104902673658 0.176141377576792 0.176817262753789 0.179207243480991 3 3|0 -|/ 7059237 7060027 7059712 7058908 7063246 - gene protein_coding_gene FALSE TRUE AT3G20250.1 APUM5 (ARABIDOPSIS PUMILIO 5); RNA binding similar to APUM6 (ARABIDOPSIS PUMILIO 6), RNA binding [Arabidopsis thaliana] (TAIR:AT4G25880.1); similar to putative pumilio-family RNA-binding domain-containing protein(PPD1) [Oryza sativa (japonica cultivar-group)] (GB:BAD09696.1); similar to pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] (GB:AAF71823.1); similar to Os08g0519800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062262.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.182556859901116 2.12997293173696 0.0568483671583184 1 1.28341214285394 16.2008230215821 0.182556859901116 0.0460590206893877
AT2G35230_at 3.47871781027307 3.71320493871924 4.1285240657206 4.45736954243864 4.14943213730487 4.28282836004802 3.74676765906239 4.30894710272809 3.48338650599442 3.39568303444791 3.69915739407294 3.40688469300593 3.86465027905699 3.40666762249808 3.46391649032875 3.59058312113664 3.49653140938129 3.51337482224581 3.71241711176052 0.222229048027314 0.214677446132547 0.215427543214061 0.221051847737136 0.212177360027702 0.220110669377006 0.21576411716774 0.216277156418416 0.230118980022463 0.226542646944662 0.212405254690099 0.214890234075455 0.216498509188692 0.219694329404713 0.219838061424798 0.216133616072167 0.224587025522331 0.212177360027702 0.220061727629456 2 2 + 14850565 14851042 14850817.455 14849372 14851513 + gene protein_coding_gene FALSE TRUE AT2G35230.1|AT2G35230.2 VQ motif-containing protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G32610.2); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa] (GB:AAL67588.1); contains InterPro domain VQ; (InterPro:IPR008889)|similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G32610.2); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa] (GB:AAL67588.1); similar to Os10g0577200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065489.1); contains domain PRICHEXTENSN (PR01217) 0.233677163456927 2.12986939701112 0.0568585527090117 1 1.2832591352884 7.5760820918869 0.233677163456927 0.121996031366926
AT3G09850_at 9.15464392692586 9.26647284862743 9.16711096668194 9.3392571687943 9.40354789669383 9.22127423887224 9.41947128796867 9.4591762140771 9.70365125421205 9.62149614747332 9.31466492514864 9.13535422064206 9.28367275530073 9.30760094740758 9.04891344506045 9.4042751535784 9.4533212790734 9.38986623333406 9.52507514758056 0.0894146587880811 0.0860480375150169 0.087158606515339 0.0857762247194906 0.0896845494809042 0.0884587849996522 0.0876431545711679 0.0858277873160591 0.100583903709680 0.089156124777557 0.0904398369868051 0.087540398409564 0.086046003020433 0.086518074783528 0.091970884475642 0.086086763281822 0.091693946495596 0.0942301435082876 0.086066117715624 3 3 - 3023424 3023875 3023589.545 3023216 3025856 - gene protein_coding_gene FALSE TRUE AT3G09850.1 D111/G-patch domain-containing protein similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G17070.1); similar to Tuftelin-interacting protein TIP39, contains G-patch domain (ISS) [Ostreococcus tauri] (GB:CAL55018.1); similar to Os08g0288500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061456.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.183337865725665 -2.12936983699732 0.0569077228101778 1 1.28252090334690 18.7583440534294 -0.183337865725665 0.0480020666444533
AT1G17500_at 5.6929792391828 6.09545571222658 4.74163273496777 4.83051863222522 5.81130746938611 4.50222351434027 3.53633349377923 3.47666132621183 4.02026887419504 3.17713731411276 3.93365032028303 4.57580214740568 3.7248811073061 3.78598205527961 4.3847290990943 3.23341527417754 2.88193146870351 4.15954078532748 3.00840457290547 0.254973648412709 0.256202900039869 0.2546607381037 0.259408700908682 0.254520152182269 0.264619448154228 0.247221313437218 0.248338167994428 0.255589161426743 0.258104997372154 0.252413554925312 0.253559970840885 0.247221313437218 0.254583415526154 0.260497094862769 0.247858695628197 0.266555477186312 0.252098250369688 0.256070282609113 1 1 + 6022636 6023107 6022860.909 6018750 6023496 + gene protein_coding_gene FALSE TRUE AT1G17500.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 4 (EC 3.6.3.1) (Aminophospholipid flippase 4) (ALA4) [Arabidopsis Thaliana] (GB:Q9LNQ4); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G13900.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G72700.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G54280.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE81304.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to Putative phospholipid-transporting ATPase 7 (Aminophospholipid flippase 7) (GB:Q9LVK9); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) 0.352058878336233 2.12912178677269 0.0569321525861241 1 1.28215436630611 8.45435324159077 0.352058878336233 0.237731357733867
AT4G22570_at 10.9638940988307 10.9065874110921 12.0308975378690 11.9012192516199 11.9665704375362 11.6451727754589 12.2417830961780 12.1612514910611 12.0353916032356 12.0162649576108 12.0059010046323 11.8706133046362 12.1673743554385 12.2480704892909 11.7552578515845 12.4010712837790 12.0077508442392 12.0100653018778 11.9337717590607 0.0742659455204825 0.0710210839050904 0.0714036663078565 0.070824606919977 0.0730118184936698 0.0766149025443 0.0741148346058032 0.0719422591419699 0.0769407927685366 0.0708849037075688 0.070824606919977 0.070824606919977 0.070824606919977 0.070824606919977 0.0723377897050864 0.070824606919977 0.0780362134695631 0.0742335711547594 0.0720646110158467 4 4|0 -|/ 11882502 11885216 11883191 11882137 11885432 - gene protein_coding_gene FALSE TRUE AT4G22570.1 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1. similar to APT4, adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G12440.2); similar to adenine phosphoribosyltransferase-like [Solanum tuberosum] (GB:ABB86271.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) 0.190353128731472 2.12874687704396 0.0569690952807208 1 1.28160040107182 23.7538749263243 0.190353128731472 0.0623674965520414
AT2G31480_at 1.44646778751609 1.92206321419998 2.25743713064585 2.59816862204987 2.07830324483622 2.47258996795208 2.11545463509475 2.01363561819008 1.88916834109693 2.15455514007296 2.29275636583842 1.20319776993090 2.11128689787764 1.92285433850123 2.17437932944845 2.02097113892784 1.82121706627810 2.42707283312712 1.96982464529422 0.236518088178695 0.243904689725015 0.235897760247740 0.243084224688560 0.248136876947996 0.256990581939443 0.249372392270779 0.242647287928506 0.244397615978361 0.24226538520998 0.239018049963461 0.237289361413529 0.256926783976721 0.235901980078271 0.243793766042858 0.237051695875372 0.239040367014579 0.246844508441569 0.240621533814652 2 2 - 13416364 13416797 13416528.375 13416055 13418076 - gene protein_coding_gene FALSE TRUE AT2G31480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05894.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001071968.1) 0.234710176478644 2.12845564341089 0.0569978084251548 1 1.28117009912148 4.11363153238358 0.234710176478644 0.123357522091088
AT2G32670_at 1.72288160540923 1.75705018178041 1.85949480770828 1.79437732279008 1.74574768721006 1.57619868035627 1.96860029039887 2.07504843541314 2.39318001881665 2.32831551825554 2.17086839227753 2.11733804246375 2.09748117029947 1.74504095915914 1.92951024746906 2.18984679139677 2.21245599120124 2.08360571372704 2.14593052159504 0.168838288429608 0.173015292975571 0.173853381945814 0.175543546006326 0.167928406671525 0.171151025473850 0.175807087544410 0.171877312212404 0.171420998988814 0.170034129627147 0.178072306312955 0.171196751978997 0.170910344680443 0.170389745187875 0.172655312380759 0.172225680731721 0.172575037211540 0.176093191626862 0.175518843704777 2 2|0 +|/ 13865284 13866386 13865825.875 13864954 13866851 + gene protein_coding_gene FALSE TRUE AT2G32670.1 ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) member of Synaptobrevin -like protein family Identical to Vesicle-associated membrane protein 725 (AtVAMP725) (VAMP725) [Arabidopsis Thaliana] (GB:O48850;GB:Q8GXC1); similar to ATVAMP726 (VESICLE-ASSOCIATED MEMBRANE PROTEIN) [Arabidopsis thaliana] (TAIR:AT1G04760.1); similar to SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G33120.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) -0.178907054895367 -2.12820958793796 0.0570220780855892 1 1.28080656478469 3.99113009291079 -0.178907054895367 0.0369080817421171
AT4G21780_at 3.20541835537052 3.40396410319052 3.99130264616419 3.92242991251155 3.74029454284561 3.80393174992040 4.16548367332267 3.64799521470672 4.11407650211674 3.74270043736752 4.18366995341636 4.03623298138539 4.05314763069939 3.95161356225130 4.01994624856562 4.02229142507383 4.11599326589398 3.97654598967092 3.77494333597113 0.233255049658773 0.22707723874834 0.227459334316428 0.232234429098579 0.232075382426812 0.223201442509418 0.240426585568017 0.231344502944379 0.234626800549446 0.235090682144717 0.230566095473723 0.224463375321642 0.230028107205503 0.227329675816476 0.227702337550628 0.224216566054898 0.234733665902645 0.224751965780803 0.223201442509418 4 4 + 11567228 11567542 11567387.273 11567142 11567711 + gene protein_coding_gene FALSE TRUE AT4G21780.1 similar to hypothetical protein MtrDRAFT_AC152499g5v1 [Medicago truncatula] (GB:ABE77785.1) 0.213232208256981 2.12753365862358 0.0570887987654842 1 1.27980799041814 7.69618763672305 0.213232208256981 0.0972819471806404
AT2G31270_at 1.87127852337181 1.79929678550625 1.37309619220936 1.83469699089013 0.873873552619757 1.08738667193839 2.04246050729174 2.01677618508311 1.20751371887557 1.89967046433863 1.88867774563126 2.48009522317427 1.88346396183402 1.41320842968951 2.40624133677462 1.36351033175826 1.08131387121301 1.95984900438305 1.64357734538817 0.196461753536852 0.193543818479669 0.193543818479669 0.194424764194004 0.193543818479669 0.197587400512739 0.193543818479669 0.206476358567460 0.203820399996463 0.197654145107815 0.197342097417957 0.196482939138855 0.203617930846918 0.204204301209941 0.200304161330374 0.197177109134487 0.208343315763994 0.194549389033490 0.201673565130309 2 2|0 +|/ 13337752 13338590 13338108.1 13336086 13338907 + gene protein_coding_gene FALSE TRUE AT2G31270.1 ATCDT1A/CDT1/CDT1A (ARABIDOPSIS HOMOLOG OF YEAST CDT1 A); cyclin-dependent protein kinase/ protein binding Encodes a cyclin-dependent protein kinase. Involved in nuclear DNA replication and plastid division. Located in nucleus and chloroplast. similar to ATCDT1B/CDT1/CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 B), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT3G54710.1); similar to Os04g0185100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052191.1); similar to OSIGBa0148J22.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65885.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87370.1) -0.207115918271178 -2.12742315156234 0.0570997139069306 1 1.27964474509043 3.30892425824284 -0.207115918271178 0.0890019655573515
AT1G58080_at 8.03731616372015 7.86415121743371 7.5254558243207 7.75471774430144 7.69347598408212 7.7532952439639 8.56133669494742 8.8258210641299 8.55564892725502 8.97615106674431 9.32770395809767 9.24176333274767 8.98949451352493 9.20856940685172 9.21700022350239 9.1977046758852 8.888100151485 8.36211155814906 8.87086923053057 0.131434453653071 0.131718901692041 0.143274452563445 0.134501361857386 0.138419456940382 0.144942129302534 0.13534492197757 0.141985411725979 0.148932424951175 0.134564532108540 0.134488717663728 0.142907549962932 0.130192830483708 0.139371130122450 0.141133016961227 0.133832066625789 0.142789203951376 0.146643167976994 0.131237556916722 1 0|1 /|- 21508244 21508730 21508520.429 21507979 21511205 - gene protein_coding_gene FALSE TRUE AT1G58080.1 ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE) ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis similar to ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2), ATP phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT1G09795.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum montanum] (GB:AAT74597.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum] (GB:AAT74589.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum] (GB:AAT74590.1); contains InterPro domain Histidine biosynthesis HisG: ATP phosphoribosyltransferase; (InterPro:IPR001348); contains InterPro domain Histidine biosynthesis HisG, C-terminal; (InterPro:IPR013115) -0.19362692493513 -2.12733546791630 0.0571083761136248 1 1.27951521753487 16.9294191016326 -0.19362692493513 0.0683680811867063
AT1G55060_at 1.30638262419859 1.33884686853469 1.55234491828034 1.57172119667845 1.69806860227898 1.48704474467216 1.24971676142768 1.31362103479901 1.37746194794206 1.98552037935810 1.79519661423939 1.75144496874064 1.89168791063658 1.39461230740474 1.65888815823563 1.31058499911648 1.62857421251854 1.87448846530759 1.37542792032111 0.179016557771730 0.181520693700120 0.176605690044743 0.175350498496584 0.177373623099540 0.181257065009202 0.176420033018243 0.181616047471059 0.178314130670459 0.187244676809044 0.174912389786137 0.182791870225174 0.179880748340220 0.18814004381841 0.181874905753818 0.175696839483931 0.176881252218535 0.175259389481208 0.181335651033642 1 1 + 20553365 20553802 20553538 20553200 20553892 + gene protein_coding_gene FALSE TRUE AT1G55060.1 UBQ12 (UBIQUITIN 12) Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to polyubiquitin 6 - parsley (GB:S30151); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.179433832611007 2.12693736173524 0.057147720422683 1 1.27892715307734 3.06104573739142 0.179433832611007 0.0387132960421418
AT1G04160_at 1.50054096917184 1.71547559421319 1.48380725983086 1.15538892661363 1.38460067609371 1.43406524723489 2.19825567638512 2.15513973650350 2.12245411476368 2.6804609917499 2.71697627657547 3.27737311735594 1.89430991580206 2.71884690510398 2.67838394937780 2.56597626122598 1.767324931823 2.20030796522216 2.20893201237796 0.230622283098004 0.228007605730193 0.231622627663015 0.237403275322703 0.236435261397877 0.236399959230935 0.244320354975140 0.238761157259220 0.228007605730193 0.238642115622291 0.232059292830634 0.234356054959843 0.233988493490155 0.239871983152868 0.230794123788472 0.233619175801792 0.242587665072122 0.233493260478665 0.228007605730193 1 1|0 +|/ 1095129 1096080 1095660.833 1086494 1096145 + gene protein_coding_gene FALSE TRUE AT1G04160.1 XIB (Myosin-like protein XIB) member of Myosin-like proteins similar to XIG (Myosin-like protein XIG), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT2G20290.1); similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to MYA2 (ARABIDOPSIS MYOSIN) [Arabidopsis thaliana] (TAIR:AT5G43900.1); similar to myosin subfamily XI heavy chain [Petroselinum crispum] (GB:AAK21311.1); similar to putative myosin subfamily XI heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD21517.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71528.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.193866212139092 -2.12673967665212 0.0571672669281492 1 1.27863515609199 4.03576915489316 -0.193866212139092 0.0688664555556464
AT4G15710_at 1.96687035608114 1.78931454337569 2.10342584462967 2.28147996592114 1.54254815867013 1.61239980838235 1.73036689055924 2.40455341584019 2.21070087466918 2.19128972271334 1.65523843866347 1.35744916337897 1.42016453783045 1.90824102024196 1.70079434164759 1.92892024006786 1.95936840633804 2.20968836531571 2.0529582162681 0.203649200356195 0.204629879552096 0.204993587961948 0.200232414283015 0.198580416621178 0.204388947007702 0.200156285516397 0.210630677857032 0.202465212413216 0.207655530424330 0.202511255968997 0.202964792642614 0.204130201695816 0.199340074834476 0.202356378858555 0.200825980219173 0.205329279080958 0.208466511740662 0.198435825002449 4 4|0 +|/ 8940330 8940832 8940581.2 8940290 8940856 + gene protein_coding_gene FALSE TRUE AT4G15710.1 unknown protein -0.235989698713972 -2.12613170957424 0.057227420617165 1 1.27773719942479 3.8884362073003 -0.235989698713972 0.125107398618203
AT1G67310_at 7.35600415454337 7.80720972379762 7.53951424209713 7.60848575587327 8.385493506237 7.76810118212865 7.00115346340763 6.37358660075402 6.93391455797852 6.68325068577163 6.45098248393048 6.78469477729627 6.86440095287135 6.65815851402402 5.81059027497654 7.34291376953398 6.83384426503672 6.78790355733415 6.84857713964453 0.192233528327742 0.190602927051287 0.200561067566805 0.190663862094066 0.193701778100763 0.195334745426580 0.193527566726247 0.199770639021770 0.210470194695495 0.19725192399567 0.203586178701054 0.192912904923715 0.197645740429544 0.196338063418836 0.207466363963457 0.190602927051287 0.213474121018290 0.198659772034468 0.199876796123503 1 1|0 -|/ 25201845 25202616 25202259 25201845 25206789 - gene protein_coding_gene FALSE TRUE AT1G67310.1 calmodulin binding / transcription regulator Identical to Calmodulin-binding transcription activator 4 (Signal-responsive protein 5) (Ethylene-induced calmodulin-binding protein d) (EICBP.d) (Ethylene-induced calmodulin-binding protein 4) (EICBP4) (AtFIN21) (CMTA4) [Arabidopsis Thaliana] (GB:Q9FYG2); similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G64220.2); similar to anther ethylene-upregulated protein ER1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94398.1); similar to OSJNBa0053B21.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05533.2); similar to Os04g0388500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052630.1); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.280341066267779 2.1257492998447 0.057265287875092 1 1.27717243362351 14.2367436796917 0.280341066267779 0.171608545890401
AT1G26820_at 1.85893657431703 2.04135640379949 1.96012658528343 1.87598348929118 1.72498021333022 1.67051364470180 2.33006766851900 1.91272979637986 2.61148291044890 1.60693224151981 2.28111537725440 2.99076737758772 2.55782505825921 2.93189271511378 3.48012998438541 2.96608591976437 2.63623337402394 3.12247136815524 2.50346742974412 0.203776478491195 0.203427661711239 0.207185344767656 0.211729787607312 0.203563662586105 0.205612612525051 0.202951157067711 0.208720457857919 0.214487073544684 0.206780433984409 0.204860371489314 0.203249445371923 0.205298793064866 0.208069514133496 0.212978290053011 0.211322881326162 0.206436114416966 0.20692676950032 0.200680070848928 1 0|1 /|- 9292752 9293513 9293063.556 9292433 9293771 - gene protein_coding_gene FALSE TRUE AT1G26820.1 RNS3 (RIBONUCLEASE 3); endoribonuclease Encodes ribonuclease RNS3. Identical to Ribonuclease 3 precursor (EC 3.1.27.1) (RNS3) [Arabidopsis Thaliana] (GB:P42815); similar to ribonuclease T2 family protein [Arabidopsis thaliana] (TAIR:AT1G14220.1); similar to ribonuclease [Pyrus pyrifolia] (GB:BAA08475.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) 0.201157995989102 2.12505760773582 0.0573338414758322 1 1.27615099247376 4.47755813398056 0.201157995989102 0.080706313263588
AT4G27790_at 1.66060570351921 1.40236760692963 1.80398908754822 1.71348015966147 1.59549649331110 1.53860566242352 1.83128974414227 1.78665158453329 1.87897224617334 1.58137793934847 1.9019201711363 2.44919537854749 2.14753190979263 2.14075283888016 1.82184670788990 1.83019487393854 2.01791977262337 1.86644721420927 1.48326248997867 0.189681689455556 0.192819394903600 0.194607785798136 0.187074372991115 0.184485611649231 0.187271726178906 0.18756422864454 0.190747952353314 0.186139190252950 0.184485611649231 0.190724725093267 0.186754910451935 0.194048713413033 0.185423807166692 0.188568821360730 0.188363745658948 0.190652001757900 0.190518777916753 0.184485611649231 4 4|0 +|/ 13850525 13851407 13851040.625 13850052 13851539 + gene protein_coding_gene FALSE TRUE AT4G27790.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G08580.1); similar to Os04g0681500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054290.1); similar to H0901F07.13 [Oryza sativa (indica cultivar-group)] (GB:CAJ86276.1); similar to OSJNBa0032F06.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE03423.2); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.183384703749346 2.12492153469436 0.0573473368297991 1 1.27595006348472 3.50148425536394 0.183384703749346 0.048980252016342
AT3G57340_at 7.33050463502847 7.85984367816761 7.3927285016211 7.57817551498694 8.2718323587647 7.6889645969576 7.03561251679948 7.38545405440682 7.34668841270875 6.19427630289559 6.80114208999716 6.80154932637815 6.71941775779026 7.35448810256826 6.85112708590044 6.87859572214198 6.47893782995126 6.98038360165681 6.456359094817 0.22212567144832 0.211281109041053 0.211674915812338 0.219470993715285 0.212829670590035 0.224305386093827 0.209562501156319 0.206245715003286 0.212369765910407 0.220856760558532 0.208665941307737 0.203856338988599 0.204570482326789 0.205294171006401 0.208243813534837 0.203856338988599 0.221434878379344 0.203856338988599 0.205663061042493 3 3 + 21230679 21231200 21230903.273 21229951 21231463 + gene protein_coding_gene FALSE TRUE AT3G57340.1|AT3G57340.2 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G05750.1); similar to dnaJ-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89081.1); similar to Os01g0556400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043324.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.261251054028129 2.12483243641293 0.0573561749863823 1 1.27581850112230 14.3298793786025 0.261251054028129 0.152515496013362
AT1G70190_at 4.7497771320131 5.52415240997123 4.6609675895232 5.03402572886316 5.69452361794908 4.4133118804517 5.06174796110039 4.79010684726799 3.61006302330414 3.60388115229906 4.67217664409624 4.64026086873593 4.34211735232918 4.41796561458087 5.10259378275161 4.35922523991287 3.4295660254592 4.29340297267494 3.42917603651006 0.244115513797552 0.248247255798959 0.250247215547488 0.25191317133334 0.245819656212473 0.265223443289448 0.243422757106896 0.245328814531744 0.247111759403418 0.250618712015449 0.248684706560543 0.242919330181793 0.242919330181793 0.243606679091589 0.251242963904030 0.246454473648919 0.263024635147843 0.251130659031764 0.245092227404213 1 1 + 26434306 26434804 26434466.545 26434206 26435241 + gene protein_coding_gene FALSE TRUE AT1G70190.1 ribosomal protein L12 family protein similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT4G36420.1); similar to Ribosomal protein L7/L12 C-terminal domain containing protein [Solanum demissum] (GB:ABI49504.1); contains InterPro domain Ribosomal protein L7/12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) 0.389358970902564 2.12463881030415 0.057375386295088 1 1.27553259991312 8.96851179586182 0.389358970902564 0.271101156170952
AT4G26140_at 3.07739267852106 2.64214114517605 2.28010331705072 2.43583357241215 3.34472657436057 3.27310375328348 2.67832512032455 2.82233212266221 2.78646696042689 3.0461912187132 2.54020900045493 2.74534280630915 3.07725436968014 3.20536972013083 3.20378325717548 2.7177780344788 2.42148455937526 2.72630292313078 3.96451421420751 0.202844341701048 0.205051564764493 0.202905285406283 0.211228977161428 0.202053423400231 0.202053423400231 0.204409169150041 0.203581823142508 0.207880589409130 0.206289449024914 0.21733853052462 0.202053423400231 0.210537617598868 0.204886826217446 0.203595618787829 0.203292866419424 0.218659977865000 0.202591192074850 0.210028832454602 4 0|4 /|- 13243311 13243984 13243598.222 13243085 13247935 - gene protein_coding_gene FALSE TRUE AT4G26140.1|AT4G26140.2 BGAL12 (beta-galactosidase 12); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT3G52840.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to pear beta-galactosidase1 [Pyrus communis] (GB:BAE72073.1); similar to beta-galactosidase [Pyrus communis] (GB:CAH18936.1); similar to beta-galactosidase precursor [Carica papaya] (GB:AAC77377.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.203819754834091 -2.12456596534759 0.0573826154477799 1 1.27542504211839 5.86695214295274 -0.203819754834091 0.0847020210760567
AT3G53420_at 12.6905461206611 12.8843735156705 13.3326379816311 13.4750257270392 13.4073830081784 13.3289819311802 13.7862760465289 14.0031858411928 13.4548341192306 13.9012361068807 14.1862443991762 14.0171066508268 14.1295406799437 13.9580474136385 13.9486569961380 14.0127360049633 13.9564241987987 14.1646420551971 13.7937159608712 0.0667970521258023 0.0658106417258011 0.0686044675666488 0.0683630874084717 0.0647101153511413 0.0719738372335392 0.067000848750912 0.0671716791957752 0.0765836580651623 0.066039240265097 0.0705928317212079 0.0656063979333128 0.0671488096222274 0.066338935279096 0.0669299311059517 0.0650483729303706 0.0698714948919816 0.0702198500903785 0.0687716565517595 3 3 - 19814912 19815611 19815327.545 19814633 19816691 - gene protein_coding_gene FALSE TRUE AT3G53420.1|AT3G53420.2 PIP2A (plasma membrane intrinsic protein 2;1); water channel|PIP2A (plasma membrane intrinsic protein 2;1) a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev Identical to Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a) (PIP2a) (PIP2.1) [Arabidopsis Thaliana] (GB:P43286); similar to PIP2B (plasma membrane intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT2G37170.1); similar to plasma membrane intrinsic protein 1 [Brassica napus] (GB:AAD39373.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.187495592584179 2.12452984705953 0.0573862001564182 1 1.27537171285297 27.2451863692583 0.187495592584179 0.0576664042646462
AT1G74420_at 1.21770309628861 1.48216409818651 1.52194100500526 1.21315500321353 1.75775528336328 1.56943264980561 1.67852794822133 1.50329113151367 1.63443190719346 1.51043852657289 1.53309699627016 1.79816023010088 2.27228500466949 1.54500691291197 1.58823194538937 1.93668101277104 1.85893838577953 1.29443162027715 0.958881368680493 0.229096912190617 0.231585507255655 0.231412208753143 0.230234341965074 0.237224141708877 0.229096912190617 0.237713944181420 0.238072928569457 0.23049987598067 0.243215890476148 0.235626922381296 0.232673502213031 0.241974799901704 0.233898567229111 0.231970985726108 0.240281636205368 0.241224488365377 0.229096912190617 0.236523171697082 1 1 - 27971695 27972243 27971894.545 27971432 27973540 - gene protein_coding_gene FALSE TRUE AT1G74420.1|AT1G74420.2 FUT3 (fucosyltransferase 3); fucosyltransferase/ transferase, transferring glycosyl groups|FUT3 (fucosyltransferase 3); fucosyltransferase member of Glycosyltransferase Family- 37 Identical to Probable fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) (FUT3) [Arabidopsis Thaliana] (GB:Q9CA71); similar to FT1 (FUCOSYLTRANSFERASE 1), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G03220.1); similar to Galactoside 2-alpha-L-fucosyltransferase (Xyloglucan alpha-(1,2)-fucosyltransferase) (PsFT1) (GB:Q9M5Q1); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) 0.202793081416655 2.12418239082403 0.0574206957312928 1 1.27485870427949 3.04113191745146 0.202793081416655 0.0832574193652389
AT3G12260_at 10.8039329856996 10.9173843365504 11.0487769933041 11.0076807506145 10.9387150354338 10.8754164801539 11.1029495200981 11.1764626166518 10.2877281190390 10.4802897257954 10.7371065670287 10.7783996061591 10.8510969187406 10.6176829015284 10.9725183751241 10.7620359900638 10.5707275632219 10.7893210139539 10.3609450412619 0.0782202140460595 0.0774310478576729 0.0776369504357357 0.081020370511398 0.0780248713212891 0.0770968200535728 0.078287781277803 0.0782020122553133 0.0952875002866446 0.0784907699416715 0.0769219823638135 0.0769219823638135 0.0798969326728729 0.0827660156567047 0.078429788736448 0.0775874902500332 0.0872366045546791 0.0777091106775447 0.078278207871401 3 3|0 -|/ 3909325 3910317 3909959.9 3908947 3910427 - gene protein_coding_gene FALSE TRUE AT3G12260.1 complex 1 family protein / LVR family protein similar to Os07g0640100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060420.1); similar to Complex 1 LYR protein [Medicago truncatula] (GB:ABE85498.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) 0.175502552536029 2.12360263502604 0.0574782978539642 1 1.27400277886910 21.5520058793181 0.175502552536029 0.0267933068126389
AT3G11640_at 1.80196480912656 1.71088147949613 2.14958058152091 1.97521974511647 1.64233344211026 1.83435924548308 2.01243963519032 1.55024794099737 1.70403565411880 1.46232420788162 1.53330240364761 1.91766460454554 1.96924854385514 1.78863679717216 2.10541732475104 1.97336021320660 1.90670376118848 2.09104706941725 1.70251788801241 0.215309915705756 0.211671459809470 0.20497978912151 0.210045400220254 0.207368953532234 0.206252377656277 0.204743682694642 0.213993487171768 0.210309430924089 0.205220514335573 0.217922100223001 0.207554322186514 0.214131003414435 0.205097759424597 0.204743682694642 0.204743682694642 0.21402514709879 0.214686254322721 0.213841410759466 3 3 + 3674616 3675040 3674798.455 3674505 3675204 + gene protein_coding_gene FALSE TRUE AT3G11640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52480.1) 0.209601563536894 2.12273325138359 0.0575647788583243 1 1.27271941570647 3.60144427974376 0.209601563536894 0.0930630229141731
AT1G30570_at 2.08196061114270 2.45946321601774 1.7984850178421 1.85068405955591 1.89673613349115 1.83358551306836 2.28623496753946 2.14931066332945 3.47646926708602 2.66082344991693 3.22253493692829 3.79682805533542 2.31605000515432 2.81576399144336 3.50452612972213 2.89623081446766 2.83661809149491 2.92730265635220 2.95132102219585 0.235386126170782 0.235386126170782 0.241976650610886 0.238991555767093 0.236835929197184 0.238519577666237 0.239188690547299 0.242967643570096 0.261251856368077 0.242321313895001 0.237992888847837 0.23936075195941 0.236486460634946 0.240710600416970 0.243964451864173 0.238125673272615 0.247216544652591 0.239648712957590 0.240589764474919 1 1 + 10830902 10831433 10831151.091 10828915 10831464 + gene protein_coding_gene FALSE TRUE AT1G30570.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46290.1); similar to l1332.5 [Oryza sativa (indica cultivar-group)] (GB:CAB51834.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to H0714H04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66974.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.194712880735969 -2.12256093941823 0.0575819340445066 1 1.27246507515321 5.07906739683764 -0.194712880735969 0.0709248072297976
AT1G26750_at 6.25862616036575 6.17715913318103 5.94735730181066 6.15616273641002 5.99463448576059 5.39234034814905 6.38341271234426 6.07522691601035 5.93444376511717 5.27678838952865 5.45615736948325 5.82469250186348 5.32330755706795 5.15619316453161 5.79303552478564 5.17195978734729 5.54549733004899 5.49808436874282 5.55284096208156 0.211370130543868 0.21608857280208 0.219004542360852 0.210429786942124 0.217692958466164 0.223618034881093 0.212320552400689 0.216064179010865 0.222966771712722 0.208595724625623 0.210330471847309 0.209026072530781 0.21380495357739 0.213811696413362 0.212490044580416 0.212555643729725 0.225531237412153 0.212337256728696 0.209324216965758 1 1|0 +|/ 9246881 9247933 9247418.7 9246774 9248261 + gene protein_coding_gene FALSE TRUE AT1G26750.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96148.1) -0.233945467100672 -2.12165998729549 0.0576717107602328 1 1.27113534729463 11.5776851356171 -0.233945467100672 0.123339945015070
AT2G22080_at 8.00780725960623 7.838147637956 7.24617455598872 6.810848657379 7.88378874338166 6.95778081894967 8.07734789904484 7.60704641838737 6.85491510224065 7.7630658010565 7.06171554957644 7.91296967369669 7.60774693052469 7.7271985228587 7.15889960223742 7.73293490467488 7.46786710113755 6.81763716628414 7.55353936606324 0.179257559660602 0.188229431944287 0.191091488104924 0.193217956538373 0.206293948636050 0.182017905307411 0.190737182020351 0.181183200404903 0.195007558929493 0.186418703266558 0.191468970525187 0.179257559660602 0.187523539689234 0.190514117470261 0.182835739052324 0.179257559660602 0.179531061663418 0.196382643649771 0.179257559660602 2 2 + 9394676 9395035 9394834.4 9393596 9395263 + gene protein_coding_gene FALSE TRUE AT2G22080.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11910.2); similar to calcium-binding protein [Brassica napus] (GB:AAD02824.1) -0.306287342451752 -2.12144911016448 0.0576927430764544 1 1.27082413984696 14.9668067177503 -0.306287342451752 0.197082381624997
AT3G21080_at 4.80785036481493 5.61496034061326 4.30159391704907 4.1304253865153 4.33305696722015 3.59127925337641 1.23872572738632 1.06599240862931 1.16528776976171 1.47468691878929 0.979571085790717 1.06190363320792 1.15611662329611 1.13019280207243 0.757793775652027 1.11201290220923 1.08139829856863 1.19776722658898 1.44044370815358 0.292876597958503 0.290505769751971 0.29505492037427 0.272607419323523 0.293022477987734 0.278055375526231 0.263313913878334 0.270558416974313 0.265902795715118 0.265705923449263 0.268191930059949 0.264190905897227 0.257566010628274 0.261756245793913 0.262914795968939 0.257566010628274 0.273667806683782 0.262258511163954 0.264435782078020 3 0|3 /|- 7388533 7389242 7388927.6 7388373 7389980 - gene protein_coding_gene FALSE TRUE AT3G21080.1 ABC transporter-related similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Os05g0222200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054952.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1) 0.30333087426717 2.12133212458052 0.057704414037725 1 1.27065150006588 4.84535255019632 0.30333087426717 0.194314740009247
AT2G35310_at 2.00572914225082 1.75598747966484 2.11071592222929 2.25288126708292 2.17075937384858 2.36460255816300 2.35041626389014 1.94936564221181 2.29332797924784 2.23705263926585 2.33945981813089 2.49729340446620 2.42552395479919 2.55538869889657 2.34424995158355 2.81131529518638 2.75601943670794 2.0021699562903 2.24607682869260 0.234376784820065 0.233972925944822 0.234900092372219 0.232119923865095 0.256988160208756 0.234440342494042 0.253350239153678 0.232458480610022 0.231867593711962 0.231396784229767 0.230087177873273 0.241812289463651 0.246041556321195 0.236297886539393 0.238569906766203 0.23591024438120 0.239980610575829 0.239858580308467 0.233382698930829 2 2|0 +|/ 14872795 14873447 14873171.3 14871934 14873677 + gene protein_coding_gene FALSE TRUE AT2G35310.1 transcriptional factor B3 family protein similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT2G16210.1); similar to Transcriptional factor B3 [Medicago truncatula] (GB:ABE91622.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.208486781882705 2.12127985458812 0.057709629429549 1 1.27057436447930 4.48268056295587 0.208486781882705 0.0917350782948162
AT2G37280_at 0.823667999467376 0.604590176343317 0.866607059595449 0.907269059821948 0.668593088899763 0.575643369829751 0.667972512604727 0.761640706246953 0.435716410259604 0.380781604050723 0.499387444348529 0.776074316192929 0.88488437791256 1.00361531464829 0.439919611286467 0.250355406810470 0.640595916681069 0.66905665927935 0.152678560535233 0.240732743531817 0.238414441512893 0.242418787186165 0.243559438944773 0.243559054177357 0.245494700507208 0.236293195402938 0.236293195402938 0.251056921923478 0.244224191255577 0.242616829611206 0.240843920137566 0.240602776720659 0.237708196874843 0.236677917837235 0.239741783792719 0.241907263916449 0.236293195402938 0.245500036273156 2 2 + 15662855 15663410 15663139.727 15657479 15663496 + gene protein_coding_gene FALSE TRUE AT2G37280.1 ATPDR5/PDR5 (PLEIOTROPIC DRUG RESISTANCE 5); ATPase, coupled to transmembrane movement of substances Identical to Probable pleiotropic drug resistance protein 5 (PDR5) [Arabidopsis Thaliana] (GB:Q9ZUT8); similar to ATPDR9/PDR9 (PLEIOTROPIC DRUG RESISTANCE 9), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G53480.1); similar to ATPDR13/PDR13 (PLEIOTROPIC DRUG RESISTANCE 13), ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G15215.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT4G15236.1); similar to Pleiotropic drug resistance protein 12 (GB:Q5Z9S8); similar to Pleiotropic drug resistance protein 3 (NtPDR3) (GB:Q5W274); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59575.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.181243784242119 2.12066086043927 0.0577714253642418 1 1.26966095739870 1.21877049118957 0.181243784242119 0.0448147670178477
AT3G46800_at 0.891252448006675 0.76314231751742 0.958502435731005 0.5680025753249 1.00883871608347 0.721158869103834 1.10374356768779 1.07983246107485 1.53010688013943 1.77859811269569 0.910008306119317 1.20347678014320 1.25469118539053 1.00368245934160 0.923099675773123 1.28621563746569 1.25473402618515 1.02131796682602 0.806451106482755 0.203822037406141 0.200875400580342 0.204961341497281 0.210726679333106 0.202248521478521 0.216907502434352 0.20733339817758 0.212190831750258 0.212349326886024 0.202294484153612 0.207272468869584 0.207577806145210 0.211048876442907 0.200875400580342 0.205372695716641 0.200875400580342 0.209892690616576 0.207509179521318 0.217434577173913 3 3 - 17245491 17246043 17245743.545 17245479 17247527 - gene protein_coding_gene FALSE TRUE AT3G46800.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G46810.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19660.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G04680.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.204966247313963 -2.12050804517905 0.0577866909919754 1 1.26943547307727 2.12624515103035 -0.204966247313963 0.0869130386105866
AT2G16730_at 0.756903659103847 0.635166366744192 0.705583778937334 0.58532587698953 0.501387648238409 0.660887563870862 0.635213640431146 0.756154707440951 1.11607921290506 1.13464981197732 0.943992267872565 0.620061197608197 1.13105918838328 0.602765757639205 1.13520025764894 0.77384480105901 0.74903853488328 0.989212313076718 1.19464226463901 0.222635259982811 0.216540194324992 0.221898033021435 0.221692308052452 0.221871826566137 0.219300193002865 0.220946432921613 0.221430664917544 0.235899035325255 0.217030983824006 0.220314503562778 0.224445939721183 0.214469827733017 0.228042010474902 0.230579043750323 0.214469827733017 0.218368142780326 0.218625260590234 0.223645220443582 2 2 - 7269331 7269665 7269487.818 7268912 7273249 - gene protein_coding_gene FALSE TRUE AT2G16730.1 BGAL13 (beta-galactosidase 13); beta-galactosidase putative beta-galactosidase (BGAL13 gene) similar to BGAL11 (beta-galactosidase 11), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G35010.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G77410.1); similar to BGAL14 (beta-galactosidase 14), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G38590.1); similar to D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like [Medicago truncatula] (GB:ABE85265.1); similar to beta-galactosidase [Gossypium hirsutum] (GB:AAS76480.1); similar to putative beta-galactosidase [Nicotiana tabacum] (GB:CAC13966.1); contains InterPro domain Glycoside hydrolase family 2, sugar binding; (InterPro:IPR006104); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -0.181436841578366 -2.11927033967581 0.0579104737053784 1 1.26760940875126 1.6628798483588 -0.181436841578366 0.0455725241957587
AT3G57870_at 11.7052953194683 11.8183634800528 11.9650946247356 11.9535769358995 11.9734942120067 11.6349312149745 11.8376331293433 11.8978867728263 11.6482329088346 11.6685998605125 12.0531292674515 11.8908960383169 11.9714762242917 11.8689873672477 11.9702740289891 11.9266662354591 11.7231586268063 11.8265894244627 11.4577829435657 0.082962893886991 0.082962893886991 0.082962893886991 0.0842563058553396 0.082962893886991 0.0875423202730416 0.083192514240038 0.082962893886991 0.091565712188654 0.082962893886991 0.0836095707736575 0.0832105824578265 0.082988329988594 0.082962893886991 0.082962893886991 0.082962893886991 0.0901673555530899 0.0886553564099624 0.082962893886991 3 3|0 -|/ 21439980 21441056 21440350.5 21439473 21441177 - gene protein_coding_gene FALSE TRUE AT3G57870.1 AHUS5 (EMBRYO DEFECTIVE 1637); ubiquitin-protein ligase Encodes a ubiquitin-conjugating enzyme. similar to ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G02760.1); similar to Os03g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048802.1); similar to SUMO E2 conjugating enzyme SCE1 [Nicotiana benthamiana] (GB:CAE45567.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.189669076069285 2.11921563577893 0.0579159504259442 1 1.26752870946567 23.5960023224629 0.189669076069285 0.0626764885637627
AT3G16370_at 11.1367130692126 11.4702203970890 9.66891211671178 9.94645529278173 11.2578543774861 11.0434292537089 11.3750316562935 11.8217099709744 12.2431166156993 11.4653792069009 12.9031816788035 13.0799670482840 12.4737481833571 12.3881956224558 12.8084513998878 11.9385280127502 11.1788585760519 12.4267011953717 11.9293236298041 0.109625665924417 0.101290595077647 0.135441581216785 0.116114681404378 0.102759579220028 0.112131893535007 0.103366448190928 0.105162259622964 0.114083563491644 0.101947989087689 0.103596190342537 0.103052162562904 0.101340681543567 0.108869877606387 0.102162458039618 0.101290595077647 0.111753872614327 0.102207259360774 0.101837718787001 3 3|0 +|/ 5557628 5558326 5558037.4 5556716 5558595 + gene protein_coding_gene FALSE TRUE AT3G16370.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.225662599700725 -2.11897899081670 0.057939647962824 1 1.26717961898109 23.1045293244931 -0.225662599700725 0.113974201355987
AT4G28703_at 2.91130126187649 3.17593152383531 2.37737012271932 2.51062325237342 2.26252653752354 2.59504219032747 2.20695785341833 2.23593191504628 2.30723547059838 2.67958393904662 2.08267298149079 2.6855052401681 2.53571119892023 2.38930714136978 2.4188116608884 2.06183484097810 1.92380918229005 2.37152921012609 2.54035216558333 0.226135388568786 0.226377064244595 0.222985496538775 0.218490851444166 0.214597631570178 0.229894656651135 0.216961514059305 0.221996551668804 0.216686228750959 0.218794513804842 0.220113831757852 0.217723062876186 0.214127855886583 0.214127855886583 0.221718240028613 0.216069611586098 0.214127855886583 0.216255709351573 0.214607367367201 4 4|0 +|/ 14166391 14166773 14166655 14166275 14166928 + gene protein_coding_gene FALSE TRUE AT4G28703.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04300.1); similar to Cupin, RmlC-type [Medicago truncatula] (GB:ABE82642.1); contains InterPro domain Protein of unknown function DUF861, cupin_3; (InterPro:IPR008579); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313) -0.198274811261001 -2.11855505573307 0.0579821236336116 1 1.26655427944494 4.94331301902588 -0.198274811261001 0.0772358547713679
AT1G63770_at 11.2951543128695 11.2074997551080 11.6351334718777 11.6577657752881 11.7709766989557 11.392790271319 11.6807761257809 11.3681478319148 10.8017519014575 11.3159103648747 11.1987927302769 11.1223816684488 11.4441583039853 11.0190505444404 10.9667191215358 11.4723839041169 11.6764970482623 11.4269935291092 11.2077886575100 0.0763481359171437 0.0702762892390108 0.072927091347687 0.071071530331187 0.0701754240710797 0.0717728209324281 0.0701754240710797 0.0713213775095713 0.0770804033065868 0.0729489785185148 0.0701754240710797 0.0707501255531227 0.0743559054231707 0.0827838260066896 0.0763296174653576 0.0709535749149322 0.0730399986842258 0.0782452919056745 0.0711114660059893 1 1|0 -|/ 23661703 23662352 23662084.667 23661169 23667906 - gene protein_coding_gene FALSE TRUE AT1G63770.1|AT1G63770.2 peptidase M1 family protein similar to APM1 (Aberrant peroxisome morphology 1) [Arabidopsis thaliana] (TAIR:AT4G33090.1); similar to Peptidase M, neutral zinc metallopeptidase, zinc-binding site [Nitrosococcus oceani ATCC 19707] (GB:YP_343342.1); similar to Puromycin-sensitive aminopeptidase and related aminopeptidases (ISS) [Ostreococcus tauri] (GB:CAL56589.1); similar to putative aminopeptidase N [Oryza sativa (japonica cultivar-group)] (GB:BAD09617.1); contains InterPro domain Peptidase M1, alanyl aminopeptidase; (InterPro:IPR012779); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930) 0.20433025646652 2.11802129278614 0.0580356453331205 1 1.26576699836662 22.7007084041656 0.20433025646652 0.0863466414874214
AT2G25280_at 6.7847002817231 7.46140147805234 7.57393122271367 7.35164156868247 7.55640286167207 7.33071788358489 6.91836550415824 6.99319862354432 6.52052201873962 6.42850679287783 6.53384180272637 6.23907916165984 6.27829557198678 6.39634212219767 6.65448862821101 6.6394533763563 6.43679507083988 6.26278386365477 6.14654911099203 0.214550172972748 0.210292316513627 0.210111941905564 0.213582668734655 0.205173626640760 0.214498389406665 0.214206488922937 0.205282098499021 0.206138000639599 0.213638275070319 0.201618277399962 0.204328894630699 0.212217422839513 0.210210080442869 0.209044596230381 0.200984247290142 0.218916012279423 0.204882667929037 0.207614671512546 2 2|0 -|/ 10769732 10770906 10770388.7 10769434 10771889 - gene protein_coding_gene FALSE TRUE AT2G25280.1 similar to Os08g0299000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061484.1); similar to CG8031-PA [Drosophila melanogaster] (GB:NP_650252.1); contains InterPro domain Protein of unknown function DUF52; (InterPro:IPR002737) 0.239349610564011 2.11773855439447 0.0580640151537903 1 1.26534999823065 13.6439587233033 0.239349610564011 0.129949062553542
AT2G27790_at 3.01315991392372 3.11284214066577 2.53213234036072 2.95411480826707 3.09568958374986 2.96474802864192 2.80087504574955 3.2459876602791 3.56883159961924 3.65329722814551 3.748257701964 2.94181967638622 3.90225881822987 3.68774034995790 3.26935504840715 3.09987167760580 3.06200962540983 3.37292714701414 3.79775168255118 0.240023648276855 0.234633984111254 0.241935143165392 0.251872958153525 0.245795698682071 0.257973194343679 0.234633984111254 0.234633984111254 0.246925659678281 0.23772092916999 0.252706431502025 0.235684735676913 0.239186656966335 0.236342443794102 0.238657890693216 0.235339109595372 0.263746036581091 0.251398079860534 0.234633984111254 2 0|2 /|- 11854421 11854821 11854547 11854259 11856584 - gene protein_coding_gene FALSE TRUE AT2G27790.1 nucleic acid binding / nucleotide binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G27300.1); similar to Os02g0105000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045616.1); similar to Dkfzp564o0523 protein [Danio rerio] (GB:AAH91857.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.222154248858213 -2.11759775680702 0.0580781476089373 1 1.26514234864538 6.49435544473497 -0.222154248858213 0.109896753394854
AT1G08630_at 1.63340187396664 0.95178863572427 1.34512399106709 1.71739268332810 1.55786738201774 1.59674316926467 1.32213986430471 1.46204885400343 1.48833527136887 1.43674147224923 1.38789762689169 1.41947393290178 1.46242883720588 1.45460147953676 1.65907766480154 1.50498498569971 1.6398730851482 1.67535095324504 0.81434491284198 0.202539691264709 0.197847413819905 0.201011812516578 0.206928521324060 0.199184440063826 0.206336656958249 0.202380290714637 0.201392957839849 0.203252729728378 0.201607893055393 0.202493975619246 0.200130088850676 0.197847413819905 0.205430079669153 0.205594942067416 0.197847413819905 0.217606477682091 0.207080647445129 0.211069808303530 1 1|0 -|/ 2743954 2745060 2744666.333 2743764 2747970 - gene protein_coding_gene FALSE TRUE AT1G08630.1|AT1G08630.2|AT1G08630.3|AT1G08630.4|AT1G08630.5 THA1 (THREONINE ALDOLASE 1); aldehyde-lyase/ threonine aldolase|THA1 (THREONINE ALDOLASE 1); aldehyde-lyase|THA1 (THREONINE ALDOLASE 1) Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings. similar to THA2 (THREONINE ALDOLASE 2), threonine aldolase [Arabidopsis thaliana] (TAIR:AT3G04520.1); similar to L-allo-threonine aldolase-related protein [Solanum tuberosum] (GB:ABB72802.1); contains InterPro domain Aromatic amino acid beta-eliminating lyase/threonine aldolase; (InterPro:IPR001597) 0.245462092305885 2.11741245085239 0.0580967525255319 1 1.26486906524908 2.83428078479234 0.245462092305885 0.136731412863126
AT1G04050_at 1.88902318822032 1.72973745542945 2.33288866866286 2.22526880906851 2.13699571623230 2.15776568669173 1.89300266797581 2.11560822289356 2.28580693302873 2.43703850783251 2.52530805169730 2.36210832767586 2.46146097923216 2.31005531998684 2.53394264850884 2.59813649142902 2.58764685807776 2.52823242794874 2.55974720124825 0.137525262838859 0.140866015696526 0.142083606750250 0.139121781594051 0.136199912863835 0.137466065928678 0.137753393249024 0.138717301126846 0.14341231129774 0.135325603388889 0.140676114314036 0.135806104271599 0.137455078739495 0.139508449279777 0.138181300620981 0.137118712715997 0.142433046825357 0.138179095166828 0.139349667394031 1 0|1 /|- 1046132 1048550 1047414.933 1045597 1048751 - gene protein_coding_gene FALSE TRUE AT1G04050.1 SUVR1 (Arabidopsis homolog of SU(VAR)3-9 1); histone-lysine N-methyltransferase/ zinc ion binding Encodes SUVR1, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression. Identical to Histone-lysine N-methyltransferase SUVR1 (EC 2.1.1.43) (Suppressor of variegation 3-9-related protein 1) (Su(var)3-9-related protein 1) (Protein SET DOMAIN GROUP 13) (SUVR1) [Arabidopsis Thaliana] (GB:Q946J2;GB:O64498;GB:Q9SAW1); similar to SUVR2, histone-lysine N-methyltransferase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G43990.4); similar to SET-related re (GB:ABE92042.1); similar to Os02g0621100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047458.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) 0.183608671950233 2.11685697271801 0.0581525569599747 1 1.26404991493193 4.51798243628318 0.183608671950233 0.0510257783460266
AT1G79600_at 9.8808753574401 9.80207706739015 10.0056962220111 9.9056295506422 10.2326670132967 9.81917950523232 10.7670954255962 10.5630134024180 10.5533181329910 10.6447137897350 10.6003985045406 10.3117786463830 10.3313426929102 10.6207627763712 10.0444399834073 10.7260632873704 10.3959159167413 10.3153664183234 10.4798562762669 0.102130781326032 0.102155725461398 0.105044319638792 0.113238157289301 0.0999607668768513 0.107710330870068 0.103288271951138 0.103777746277975 0.111493394302091 0.107394352428358 0.098472501088379 0.0992535456073487 0.103624666910159 0.100058420010808 0.107638944426920 0.098472501088379 0.099801404508562 0.107524012554080 0.106767798804134 1 1 - 29955027 29955652 29955357.818 29954818 29957583 - gene protein_coding_gene FALSE TRUE AT1G79600.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G71810.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44178.1); similar to Predicted unusual protein kinase (ISS) [Ostreococcus tauri] (GB:CAL54536.1); similar to Os05g0323800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055194.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.201754889245275 -2.11665692469393 0.0581726666139604 1 1.26375492777462 20.6108064902968 -0.201754889245275 0.0827852527274032
AT1G19710_at 5.2866243505488 5.84823283315103 5.06276966451006 4.85415568908023 5.3437055123623 4.37223997175891 5.17846296471703 5.55830473299167 5.50519875869265 5.4733916518248 5.78831833432043 5.76015754772186 5.12777918514233 5.71261806886877 5.38794744567965 4.99707178680577 5.15973310929737 5.19017260621545 5.41852878811675 0.232016248592508 0.224238071843368 0.216054080983602 0.225203809688135 0.222011834023629 0.230936204978856 0.232520071177613 0.212022565232215 0.229204374528677 0.214374650913829 0.214678384242706 0.224096639665075 0.217742320734843 0.216850774335012 0.213130683687097 0.215264542703768 0.230887010364494 0.227151442922636 0.228145203066048 1 1 + 6816118 6816673 6816443.545 6814784 6816867 + gene protein_coding_gene FALSE TRUE AT1G19710.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G75420.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Putative first mannosyl transferase, WbaZ [Burkholderia xenovorans LB400] (GB:YP_558793.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.317460074981267 -2.11660116765150 0.0581782727159865 1 1.26367271124195 10.6161525449156 -0.317460074981267 0.208166054858308
AT3G12670_at 7.4680568471452 7.82527777662771 7.11860444895165 6.84532649942036 8.09634061797714 7.30038416527507 7.5883955651099 7.53492391351974 7.04629543449564 6.89837217217925 6.6361907702683 6.85628553439588 6.8135224953556 6.74601221373121 7.65653145472374 6.6720590071441 6.26164553233707 6.71435686714691 7.24331246806117 0.191598137575927 0.187532182257838 0.202351530130427 0.188726345939071 0.192129853164463 0.207909403677026 0.190433771159653 0.188712310477138 0.194448230525276 0.193173946691226 0.188553871846739 0.188812349098889 0.187535444995426 0.192849438057904 0.187532182257838 0.187532182257838 0.205356576718801 0.194091839754995 0.188493727468155 3 3|0 -|/ 4020483 4021359 4020928.333 4020127 4024275 - gene protein_coding_gene FALSE TRUE AT3G12670.1 EMB2742 (EMBRYO DEFECTIVE 2742); CTP synthase similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to putative CTP synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61286.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.266042066609375 -2.11655889136312 0.0581825237342394 1 1.26361037326969 14.4007814839033 -0.266042066609375 0.158483827926324
AT3G55040_at 9.81091464114967 9.71484939886638 9.81243015359419 9.7237088599024 10.0260441907152 9.60121996226546 10.4971000914350 10.4256410607936 10.3505353966394 10.3204261328053 10.0943010944642 10.0198692715256 10.1893791712776 10.2613611730591 10.2059394555760 10.5243294974423 10.2010634317994 10.1785102079727 10.1841117154425 0.0841817067366528 0.084113835240491 0.0897468746328443 0.0902056001636272 0.0905821961340859 0.0861386121549475 0.0936438522525384 0.0871824769515873 0.0880980871829 0.0877912998196125 0.0886424111981219 0.0877955919025663 0.0845091378402093 0.0847106564916671 0.0877287472811748 0.0878630179597041 0.0856460656350327 0.088365834159085 0.0847557384704563 3 0|3 /|- 20409696 20410286 20409995.667 20409515 20411323 - gene protein_coding_gene FALSE TRUE AT3G55040.1 In2-1 protein, putative similar to In2-1 protein, putative [Arabidopsis thaliana] (TAIR:AT5G02790.1); similar to Os03g0283100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049751.1); similar to IN2-1 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95327.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.198477879257324 -2.11608836234087 0.0582298568218822 1 1.26291659074938 20.1986728337662 -0.198477879257324 0.0779095895957414
AT3G53360_at 1.79951375512501 1.74838367625552 2.13207583158805 1.94695365920437 1.66505216476573 1.87003249356495 1.8403680596887 1.73674022722979 1.41766943387028 1.19787364635642 1.35446993289671 1.47263516303716 1.5681857505951 1.55820028023734 1.64525535485803 1.85433351229961 1.87140524244974 1.58114553191687 1.48782915151836 0.223280374511725 0.225039588509297 0.22295026828335 0.22579674164764 0.227346798152791 0.228296154757668 0.228671397421495 0.230052510628384 0.223469616051046 0.237096071812781 0.233424124171411 0.225415961629169 0.238168166884227 0.229351351563667 0.22295026828335 0.22295026828335 0.232515289732299 0.22295026828335 0.223043608510189 3 3 + 19797205 19797524 19797367.909 19795480 19797786 + gene protein_coding_gene FALSE TRUE AT3G53360.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G39530.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE78309.1); similar to Os06g0506100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057720.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.183845104913662 2.11540551339513 0.0582986132080752 1 1.26190984667144 3.33288727840343 0.183845104913662 0.0518125104310467
AT1G01470_at 11.7243484488574 11.7926291712787 11.9424145685161 11.8971556914476 12.0213969110906 11.7717729663966 11.8019651499242 11.9097405752046 10.8428804852525 11.0967290382692 10.9775727246813 10.7852311782924 11.4743033130396 11.2911222986019 10.5071291647396 11.1713727782894 11.6942455829377 11.1526542495371 10.6631850968700 0.0652123993679753 0.0646890935688923 0.0629233120182158 0.0646804034999367 0.0651355091544552 0.072401436207496 0.0649697407650894 0.0650606210327831 0.0668229216871082 0.0646537242290457 0.0674071889310252 0.065375964601114 0.0636518744368735 0.0659700721583252 0.0677251797871746 0.0633485432785307 0.0656189456797117 0.0671467358996894 0.0638533224002103 1 1|0 -|/ 172359 172733 172528.3 172146 172948 - gene protein_coding_gene FALSE TRUE AT1G01470.1 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. Identical to Putative desiccation-related protein LEA14 (LEA14) [Arabidopsis Thaliana] (GB:O03983;GB:Q42314); similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT2G46140.1); similar to Late embryogenesis abundant protein Lea14-A (GB:P46518); contains InterPro domain Late embryogenesis abundant protein 2; (InterPro:IPR004864) 0.182559951257065 2.11453625117202 0.0583862508822337 1 1.26062843701769 22.8573289943705 0.182559951257065 0.0491421251233328
AT4G34200_at 7.99781993814188 8.1250904731932 8.48461209693381 8.67930436736295 6.84167969321229 7.29760381448203 7.93039279286675 8.19478767102441 6.62983176154261 7.44480325770103 7.51888879094729 8.7611409365197 7.33659818616256 7.54209442025109 8.0715417196802 7.43814224106729 7.26975336192532 8.12125752669494 7.20642090085587 0.153046628139573 0.148655182056297 0.152909357422017 0.151011157385265 0.151919727854993 0.156317264722003 0.148655182056297 0.149620433859239 0.176212239299735 0.153733780232452 0.149641709220190 0.148655182056297 0.155683317352900 0.153027322380766 0.160994233568462 0.152948195305210 0.154071839632187 0.150196756271684 0.151271846617949 4 4 - 16374047 16374592 16374348.636 16373823 16376626 - gene protein_coding_gene FALSE TRUE AT4G34200.1 EDA9 (embryo sac development arrest 9); NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative [Arabidopsis thaliana] (TAIR:AT3G19480.1); similar to D-isomer specific 2-hydroxyacid dehydrogenase, catalytic re (GB:ABE86334.1); similar to H0212B02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68268.1); similar to putative D-3 [Oryza sativa (japonica cultivar-group)] (GB:BAD37553.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain D-3-phosphoglycerate dehydrogenase; (InterPro:IPR006236); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) 0.213759557698712 2.11448988622396 0.0583909288277558 1 1.26056009415667 15.3694675832051 0.213759557698712 0.0996942557781358
AT1G52970_at 1.19258716246003 1.36148335941241 1.27086680037767 1.15127766749206 1.12312709304337 1.43120402633108 1.65774115733857 1.16690394948350 1.71425247880382 1.48047499455678 1.33095381475197 1.28520903111436 1.05554231876313 1.25842388315134 1.34288610085387 1.09029311690313 1.46245138259962 1.39629594165306 1.65091479827201 0.201239774608999 0.209894612624371 0.206072720238005 0.199101261342416 0.203457477625073 0.203065588476137 0.207049920835844 0.204209478900873 0.20866464310328 0.217727749643498 0.209796029580313 0.203601338380435 0.206134834930484 0.198551113121887 0.201878159287326 0.198551113121887 0.199783887485312 0.208716035566452 0.206497184488845 1 1 - 19740319 19740713 19740514.273 19740302 19740751 - gene protein_coding_gene FALSE TRUE AT1G52970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45190.1); contains InterPro domain Protein of unknown function DUF784, Arabidopsis thaliana; (InterPro:IPR008502) -0.219008576091488 -2.11380022156399 0.0584605537797885 1 1.2595435783181 2.74088442162634 -0.219008576091488 0.106489809593095
AT1G33270_at 7.63361183135659 7.30028984334195 7.67641517768614 7.86095444705352 8.02577057345475 7.52742538145134 8.04902635862119 7.93019831651525 6.73121720777342 7.0125314178186 6.78145663841773 6.81177804357726 7.09820166087956 7.03485871092607 6.61367935542546 7.53758234367755 7.62274366549533 7.29929613136331 6.35585087243012 0.228448871534214 0.227637449207442 0.228565305773455 0.226241710683846 0.223614420819656 0.234457671285953 0.226166293026551 0.218663168019388 0.247758868113943 0.223808883961335 0.228905529369696 0.224447022038937 0.221102043273285 0.22978377402314 0.225267554537433 0.218663168019388 0.233777266827052 0.225129942640844 0.235077612876117 1 1|0 -|/ 12068323 12069477 12068902.667 12068043 12070354 - gene protein_coding_gene FALSE TRUE AT1G33270.1|AT1G33270.2 patatin-related similar to patatin, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94222.2); similar to Os11g0546300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068065.1); contains InterPro domain Patatin; (InterPro:IPR002641) 0.222221438416135 2.11364502370244 0.058476232580244 1 1.25931484434604 14.6503695252156 0.222221438416135 0.11048782363139
AT3G53060_at 1.18583791255144 1.30124285078535 1.50307057779147 1.61577680861295 1.03130791520799 1.27685673411609 1.22253787427871 1.25736480704688 1.44779320211803 1.39443248011685 1.96833038960543 1.33051743572661 1.85027217973902 1.44924722073918 1.85840484123997 1.71331464725864 1.27132282576816 1.49700085932736 1.25458592920207 0.177610632842879 0.178421059421878 0.179241293964047 0.175880176371530 0.181995244692848 0.179214135574544 0.178383636382526 0.179372370699905 0.180046360363184 0.185587638861609 0.183741359044097 0.180361542154703 0.182644972948202 0.180969728851146 0.178408723437881 0.182961673668760 0.175880176371530 0.183356983812389 0.176812913599711 3 3 + 19681153 19681377 19681256.636 19681144 19681401 + gene protein_coding_gene FALSE TRUE AT3G53060.1 ASK6 (ARABIDOPSIS SKP1-LIKE 6); ubiquitin-protein ligase similar to ASK5 (ARABIDOPSIS SKP1-LIKE 5), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G60020.1); similar to Skp1 [Medicago sativa] (GB:AAD34458.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.183352288606548 2.11298985397572 0.0585424647285343 1 1.25834930767625 2.79070202025112 0.183352288606548 0.05119848827423
AT1G12490_at 1.55531725960483 1.44022430911717 1.27480216571751 1.68329205654497 1.68047448450294 1.39441818784098 1.61765111973335 1.66985164766504 2.10537194512153 1.80564334786410 1.51805518335592 1.58847612694007 1.77362393793286 1.39124592898226 1.59918352560656 1.27799664500587 1.56582167517220 1.62921351859166 1.76452928273189 0.175285642550614 0.180061052994114 0.177571651421712 0.178929674083997 0.174831870459267 0.175717102055715 0.174831870459267 0.179748949006627 0.174831870459267 0.179628843865003 0.175926504376848 0.180757912402328 0.183200607182155 0.176153905745548 0.178345162913962 0.175015992893052 0.179996977558321 0.175028821257757 0.176608346548282 1 1 + 4261298 4261816 4261583.818 4260781 4261867 + gene protein_coding_gene FALSE TRUE AT1G12490.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G09650.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.205705242292956 -2.11273775349936 0.0585679688855402 1 1.25797781092368 3.25690403364298 -0.205705242292956 0.0890287582073437
AT1G32230_at 10.6203160460488 10.4172068346890 10.8960782789660 10.8643991077297 10.8143481445403 10.3655500120415 10.2759087737792 10.1876315607046 10.167595577655 10.2001102642450 10.3075415186742 10.3110407444690 10.1769448700975 10.2975466832779 10.0368324022132 10.572353704403 10.1724714895492 10.2174311450926 10.2720035058395 0.0915788889960407 0.0908109131939132 0.0925162653983219 0.092445367720023 0.092255052640022 0.0969259045217502 0.0910862075229665 0.0918444305942858 0.10034819458703 0.0953097757102533 0.095772950732733 0.0908109131939132 0.0921970746520488 0.0950432429090408 0.094033169671264 0.0908109131939132 0.0980529511296067 0.096933841220369 0.0945475375376288 1 1 + 11614730 11615688 11615318.636 11612117 11616198 + gene protein_coding_gene FALSE TRUE AT1G32230.1|AT1G32230.2 RCD1 (RADICAL-INDUCED CELL DEATH1) Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm. similar to SRO1 (SIMILAR TO RCD ONE 1), NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] (TAIR:AT2G35510.1); similar to Os10g0577800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065494.1); similar to putative CEO protein (alternative splicing products) [Oryza sativa (japonica cultivar-group)] (GB:AAO66528.1); contains InterPro domain WWE; (InterPro:IPR004170); contains InterPro domain PARP, catalytic; (InterPro:IPR012317); contains InterPro domain Poly(ADP-ribose) polymerase, catalytic region; (InterPro:IPR001290) 0.204055976244789 2.11204188308470 0.0586384223619846 1 1.25695245511904 20.7925582292967 0.204055976244789 0.0867812720515126
AT4G29530_at 4.98442826826288 4.93264802752155 4.75621139748485 4.57924265195983 5.02071958463445 5.13226713607803 4.52586021967157 4.67806983738328 5.1258351135604 4.86108155591557 4.729212352708 4.30829279241017 4.48581314638622 4.43601603577767 4.86871404363137 4.1225271166452 4.59620966440806 4.11116086170811 4.74547354107461 0.215144211744045 0.214621275257093 0.217153297698890 0.21564374979906 0.225649228082697 0.220806821349563 0.215812321296284 0.218023993484253 0.221483647310764 0.218408623194369 0.210619365311139 0.215913380589308 0.213596283270074 0.215415629361492 0.223231096122519 0.210367549538408 0.219493849671592 0.216925950297249 0.213629219105427 4 4 + 14496676 14497264 14496922.091 14496085 14497460 + gene protein_coding_gene FALSE TRUE AT4G29530.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family similar to phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT1G17710.1); similar to putative phosphatase [Solanum lycopersicum] (GB:CAD30863.1); contains InterPro domain HAD-superfamily hydrolase subfamily IB, PSPase-like; (InterPro:IPR006383); contains InterPro domain HAD-superfamily subfamily IB hydrolase, hypothetical 1; (InterPro:IPR006384) -0.180847440405687 -2.11197213952987 0.0586454879782342 1 1.25684969563635 9.51020088465433 -0.180847440405687 0.0456581549933607
AT1G06830_at 7.95150766443913 8.05206201364916 7.04615531295115 7.27839271107028 8.13600307591114 8.3032751935398 8.58979547496364 9.07347187987875 9.3368656735251 8.31552273174233 9.77539706315398 9.00858932362893 8.80005311118418 8.76357647671028 9.51426029066166 9.68545483535438 8.89563418035009 9.37455940007677 9.12872400227746 0.118097794840701 0.118886779044033 0.153080317411353 0.13645721611384 0.120739152517218 0.118834300219789 0.118388378102581 0.115039141166410 0.120964090067122 0.120395923680692 0.119267402358914 0.114987864666154 0.121696677906858 0.124893961046613 0.11747114714459 0.11933985010641 0.132790759506163 0.114512686945962 0.118764700624963 1 1 + 2097235 2097456 2097340.091 2097150 2097654 + gene protein_coding_gene FALSE TRUE AT1G06830.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S11 (AtGrxS11) (GRXS11) [Arabidopsis Thaliana] (GB:Q9M9Y9); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G30540.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.212799784453087 -2.11172433584957 0.0586705991224321 1 1.25648459398333 17.1309469429612 -0.212799784453087 0.0988031824187829
AT4G22110_at 2.50607315402929 3.13112293204104 2.74592716352856 2.84459405398033 2.48802566749102 2.64769302789554 2.46828004376846 2.89073687209038 3.41535887549009 2.86853377602293 2.73457077592752 2.55605287768048 2.60353413618679 2.95621997741920 2.89418757835599 2.81099857486212 2.49558989150105 2.95425513038447 3.22214631432347 0.224466304691166 0.217805034244671 0.231724390890339 0.232252491182582 0.220030763256919 0.221088821936421 0.227814173309498 0.222325881357121 0.221703872031191 0.227145890640719 0.224119426353376 0.224954123695533 0.218115759981600 0.217805034244671 0.228643026011402 0.219659048972347 0.232219765582209 0.218796921816759 0.226994130690632 4 4|0 -|/ 11711440 11713025 11712164.3 11711326 11714240 - gene protein_coding_gene FALSE TRUE AT4G22110.1|AT4G22110.2 alcohol dehydrogenase, putative similar to oxidoreductase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G22430.2); similar to alcohol dehydrogenase ADH [Lycopersicon esculentum] (GB:AAB33480.2); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.242748404873778 -2.11126658635285 0.0587170118621008 1 1.25581020924776 5.67498450088734 -0.242748404873778 0.134536597671885
AT2G45140_at 9.21311613407948 9.37753725428225 9.32306407048587 9.55345863661699 9.82320052346018 9.32385342895204 8.8880455227884 9.29336467562253 8.62358118410636 8.602508067749 8.94866871704912 8.59508345208269 8.8041153501717 8.87516918567727 8.5071002420024 8.93884623827625 8.38734061131963 8.56108928778036 8.4316668207962 0.180053008952605 0.178627896285539 0.17715572760142 0.178192335861689 0.171571756860205 0.181819627620920 0.169644622817533 0.173746342993456 0.186246601834414 0.171633391276509 0.166716032040907 0.174486200216928 0.167409840075180 0.174987105544962 0.165476281754925 0.167605566521029 0.179204912173360 0.177815549014476 0.173781810679653 2 2|0 +|/ 18618453 18620000 18619247.625 18617881 18620365 + gene protein_coding_gene FALSE TRUE AT2G45140.1 vesicle-associated membrane protein, putative / VAMP, putative similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1), protein binding [Arabidopsis thaliana] (TAIR:AT3G60600.1); similar to Major sperm protein [Medicago truncatula] (GB:ABE80895.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.231234773090003 2.11071518008564 0.0587729669261096 1 1.25499791371239 17.9768360273337 0.231234773090003 0.121600563012385
AT4G28550_at 3.0032321209493 2.99627820171705 3.22031438153867 3.35379806073464 2.77370210912002 3.08665605451893 2.6103693137929 2.74652340531232 2.98456396197575 3.16630079128759 3.0998535001743 3.55966674030069 2.90916513366940 3.22327327963732 3.25155919571604 2.85744471602266 3.10409576278906 3.65722861736390 3.14513122567162 0.213068946786008 0.203077777577801 0.207161039164951 0.208645398841441 0.205668666935423 0.213038964197459 0.203077777577801 0.205724191470468 0.218242621306528 0.203077777577801 0.203077777577801 0.210806011021737 0.206221962917544 0.208869530675022 0.204434969195835 0.203077777577801 0.206339146996850 0.212190926534073 0.204214405564594 4 4|0 +|/ 14112482 14113171 14112842 14110890 14113754 + gene protein_coding_gene FALSE TRUE AT4G28550.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G20440.1); similar to TBC domain, putative [Medicago truncatula] (GB:ABE91156.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.189318716466344 2.11070527640633 0.0587739723832636 1 1.25498332496268 6.12708480322089 0.189318716466344 0.0634297536136578
AT3G19740_at 8.29640296313302 8.36428774512663 8.09652566535222 8.1885974683168 7.9004763065415 8.02829416784505 7.96482855396984 7.87147389225002 7.96321453841365 7.71732222650486 7.50186828729009 7.41466453534346 7.12163249553058 7.65156273124833 7.67855174955983 7.61104270139705 7.65715153901973 7.26411316165374 7.62808365302506 0.151222912574550 0.145216700406493 0.147453002511908 0.143726500886650 0.156974685028833 0.152913249912148 0.160130596827745 0.153179501245518 0.162642401822494 0.143229597064646 0.151072969132775 0.145736053963775 0.147919974458076 0.151694203640584 0.145090798737981 0.143210703212663 0.155514999540781 0.144289407365231 0.143828689765534 3 3|0 -|/ 6856025 6857003 6856495.9 6855843 6859040 - gene protein_coding_gene FALSE TRUE AT3G19740.1 ATPase similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G50140.1); similar to transitional endoplasmic reticulum ATPase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16461.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.176370812895082 -2.11015141148362 0.0588302286682943 1 1.25416748608342 15.7174176150393 -0.176370812895082 0.0337957898941911
AT2G04600_at 2.98841419099178 3.07405006240578 3.47051349495253 3.51315072517574 2.57579244819708 3.31164961485519 2.82905749783621 2.87110439135645 3.11795875844399 3.36481888403848 3.99771757537073 3.28352932448397 3.20529298539627 3.47605328623546 3.52810636325027 2.64199912804346 4.05781667084122 3.50627116278721 3.31107368250436 0.252490296609682 0.252490296609682 0.252490296609682 0.259260694261947 0.256065377453685 0.272798364722462 0.252490296609682 0.252490296609682 0.257760792300846 0.252490296609682 0.264515783487438 0.258523341045471 0.262134309905794 0.252490296609682 0.252490296609682 0.263419332332760 0.266575145202806 0.252490296609682 0.252490296609682 2 0|2 /|- 1608431 1608435 1608433 1608073 1609755 - gene protein_coding_gene FALSE TRUE AT2G04600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13865.1) 0.237300619434855 2.11006076108663 0.0588394409183523 1 1.25403396610096 6.44257426341135 0.237300619434855 0.128621084212986
AT2G24210_at 0.109453120638344 0.432708308694799 -0.168234812733271 0.127641207533906 0.164397126340945 -0.131581755587380 0.0511272434055853 0.544343889561668 0.866249500389302 0.246624142109625 0.312014442064474 0.171283319213598 0.608942483657307 0.216545935444780 0.0758516843993212 0.650496170396221 0.181631210748529 0.156487156939858 0.323421656368996 0.210030150597424 0.199920455094670 0.206259243182417 0.202535296485051 0.203566573429512 0.200832525099072 0.206456525178510 0.204868537999429 0.205985280815201 0.215274187487040 0.208088051528172 0.203112813204211 0.214481979429936 0.205400554677027 0.205356779694792 0.199504880805792 0.207800394954347 0.200788520952464 0.207856398106951 2 2 + 10303378 10304451 10304018.636 10301410 10304610 + gene protein_coding_gene FALSE TRUE AT2G24210.1 TPS10 (TERPENE SYNTHASE 10); myrcene/(E)-beta-ocimene synthase similar to ATTPS-CIN (TERPENE SYNTHASE-LIKE SEQUENCE-1,8-CINEOLE), myrcene/(E)-beta-ocimene synthase [Arabidopsis thaliana] (TAIR:AT3G25830.1); similar to myrcene/ocimene synthase, putative [Arabidopsis thaliana] (TAIR:AT3G25810.1); similar to ATTPS-CIN (TERPENE SYNTHASE-LIKE SEQUENCE-1,8-CINEOLE), myrcene/(E)-beta-ocimene synthase [Arabidopsis thaliana] (TAIR:AT3G25820.1); similar to putative chloroplast terpene synthase [Quercus ilex] (GB:CAC41012.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.234230624225589 -2.11003209855722 0.0588423540014992 1 1.25399174917287 0.528942615972151 -0.234230624225589 0.125139307660241
AT4G37150_at 3.93054501498529 4.33222180999167 6.16595895511519 6.70578072977983 1.73844689429608 1.54334637390602 1.81942954300774 1.94679333291357 1.95238766206189 1.81017907313451 0.918466669007588 1.12188351270864 1.29032506537638 1.30399173133455 0.814556930715152 1.60276482542773 1.36920790303775 1.22934939828516 1.554488054744 0.254374466036305 0.267954435621759 0.255952804837838 0.260736128231881 0.240818812001352 0.250617553085131 0.243209487636241 0.242169205452788 0.250739285777326 0.243959082263227 0.247690223733979 0.246276257855015 0.244143927172408 0.240818812001352 0.240818812001352 0.240818812001352 0.248820582185332 0.243360468890286 0.240818812001352 4 4 - 17493000 17493847 17493477.818 17492872 17494103 - gene protein_coding_gene FALSE TRUE AT4G37150.1 esterase, putative similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); similar to protein S [Catharanthus roseus] (GB:AAU95203.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.232551235444766 2.10990970229933 0.05885479514037 1 1.2538114745349 5.01215025731613 0.232551235444766 0.123226288255019
AT4G33210_at 8.16512288759243 8.368454522759 8.17957307980079 8.33038832325688 8.69862573670288 8.44597463208664 7.96230668909787 8.42178700743065 7.70819816933087 7.398871902955 7.95649974337377 7.82052987330422 7.8534546343847 7.80029035048505 7.61967566807819 7.95995521084565 7.9417375359919 8.02813696909631 7.7788418753047 0.189355260815201 0.169584576376732 0.182768511839718 0.175361472269708 0.176306512494169 0.169481198811763 0.181164642704477 0.173340899738094 0.182018252141089 0.179864062844386 0.164320894388683 0.168288492152477 0.178226867979999 0.167565818350441 0.182573465766369 0.173550989856856 0.186844272547922 0.166024878036494 0.181010179177953 4 4|0 -|/ 16015989 16017148 16016576.5 16015974 16020700 - gene protein_coding_gene FALSE TRUE AT4G33210.1 F-box family protein (FBL15) similar to F-box family protein (FBL3) [Arabidopsis thaliana] (TAIR:AT5G01720.1); similar to F-box family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47515.2); similar to Os10g0396400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064532.1); similar to Putative F-box protein family [Oryza sativa (japonica cultivar-group)] (GB:AAM01146.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.214060174286630 2.10933383982390 0.0589133629094343 1 1.25296335070079 16.0721152668701 0.214060174286630 0.100765338909997
AT4G15560_at 11.723772991677 11.6572264810783 11.5212632969593 11.4521422307786 11.7301963946011 11.5836800932003 12.2059542500636 12.0961643953875 12.3154612949593 12.2933901533286 12.3370826195893 12.3829070557881 12.1921295305892 12.1823466835123 12.3405184233783 12.4096991979649 12.1800024834912 12.4351248369997 12.3283034256169 0.0668101087549442 0.0644113554107963 0.071917852592664 0.0675753688584926 0.0646786245061748 0.069696706073432 0.06532674788764 0.0668046641763261 0.0690507193946459 0.0663680797310316 0.0642364377805288 0.0642364377805288 0.064821144271452 0.0680995837072045 0.066398312100041 0.0642364377805288 0.0675966138163673 0.0687003654964067 0.069356636403535 4 4 + 8886489 8887223 8886941.182 8883905 8887563 + gene protein_coding_gene FALSE TRUE AT4G15560.1 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis Identical to Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor (EC 2.2.1.7) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (CLA1) [Arabidopsis Thaliana] (GB:Q38854;GB:O23407;GB:O49738); similar to DXPS3 (1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3), 1-deoxy-D-xylulose-5-phosphate synthase [Arabidopsis thaliana] (TAIR:AT5G11380.1); similar to DXPS1, 1-deoxy-D-xylulose-5-phosphate synthase [Arabidopsis thaliana] (TAIR:AT3G21500.2); similar to DEF (GB:AAC49368.1); similar to 1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon esculentum] (GB:AAD38941.1); similar to CLA1-like protein [Brassica rapa] (GB:ABE60813.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Deoxyxylulose-5-phosphate synthase; (InterPro:IPR005477); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Transketolase, N-terminal; (InterPro:IPR005474) -0.176933814860457 -2.10927427638295 0.0589194239227126 1 1.25287563111089 24.0562306726594 -0.176933814860457 0.0357712816984737
AT3G08680_at 5.71379302991332 5.85709060238587 4.64430375803924 4.67731468283228 5.19038230608282 5.86860440766577 6.04006852177288 6.25755602387758 6.67120506641779 6.10424914707401 7.34018730702426 7.31652668702443 6.59855522208037 6.8812735102608 7.19654356194613 6.40877406367663 5.85587403865322 6.90743939122753 6.4566954837321 0.191248268303207 0.188511387946791 0.189217446532136 0.200782535961218 0.184463372255210 0.190999733681596 0.195433177913581 0.189533258970382 0.196189711878884 0.184227261804047 0.180990713699144 0.192539011375528 0.185630150989703 0.183995656455548 0.187332327553836 0.184230744284592 0.198257122165347 0.185260358477836 0.180990713699144 3 3 + 2640032 2640572 2640290.091 2637566 2640844 + gene protein_coding_gene FALSE TRUE AT3G08680.1|AT3G08680.2 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58300.1); similar to Os01g0819100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044637.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB62593.1); similar to Os05g0480400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055854.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.234772799418508 -2.10926372683223 0.0589204974777392 1 1.25286009479062 12.1430708108102 -0.234772799418508 0.125856072754783
AT1G09320_at 3.67172821283566 3.63503294487833 3.38722702769573 3.80896372085028 3.42993162089011 3.55477258792401 2.85784750684881 2.89059591016591 3.12622380143566 2.79670403708132 3.24264151946074 3.00973509494614 2.93466655058742 2.93326243306025 3.04055759350255 3.4501360904445 3.30263964736891 2.88705897679343 3.04007458282241 0.194440427293355 0.190813385112093 0.189014098289726 0.185781665514794 0.186111272220944 0.202737187954709 0.188733582923065 0.195800288145834 0.186630188791084 0.184065742905531 0.184525862583311 0.188067083160948 0.184087748242063 0.189939482031236 0.189761946647468 0.191162178815215 0.184849358432467 0.182736787184667 0.182736787184667 1 1 - 3010469 3011081 3010763.818 3009943 3012365 - gene protein_coding_gene FALSE TRUE AT1G09320.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G06520.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44232.1); contains InterPro domain Agenet; (InterPro:IPR008395) 0.196921180074279 2.10850290546149 0.0589979698544302 1 1.25173970758485 6.44838979753625 0.196921180074279 0.0765883922060447
AT1G10240_at 3.15459603877911 3.44242048240622 3.412503295844 3.62477645648293 3.47125174219915 4.03086468404974 3.22033782062051 3.23648563475566 3.50778151632721 3.68223526830433 3.50578361720937 3.73335626470504 3.85654232476064 3.66664892102709 3.86125298034394 3.41830998507352 3.70392846294027 4.3202755781798 3.84672697369502 0.21247546862709 0.204348472097973 0.204013585885731 0.215738949032508 0.207843363467828 0.210691169884801 0.209258042528644 0.213371009833481 0.221414934848472 0.211046166552624 0.204013585885731 0.206515001202720 0.209112976278956 0.213525150884692 0.210123703285776 0.204013585885731 0.213878044001398 0.206423539166614 0.212183205480567 1 1 - 3356883 3357380 3357097.182 3356682 3359840 - gene protein_coding_gene FALSE TRUE AT1G10240.1 FRS11 (FAR1-RELATED SEQUENCE 11); zinc ion binding similar to FRS10 (FAR1-RELATED SEQUENCE 10), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G28530.1); similar to P0041A24.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE01491.1); similar to FAR1 [Medicago truncatula] (GB:ABE91851.1); similar to FAR1; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE78949.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.225368365587344 2.10848024214764 0.0590002790762376 1 1.25170633578560 7.16774294583657 0.225368365587344 0.114964864641089
AT4G18750_at 2.01157559305330 2.07725362779602 2.1030795432831 2.02286246410426 1.61915130068531 1.68912311695909 1.90297046854053 1.88053639476171 2.36625068084761 2.32330894697253 1.92014577564430 2.08450090064899 2.12563752102032 2.06268051148328 2.17026227675069 1.69731174316948 2.14773162123800 1.84597637671088 2.04096220038785 0.190725368744238 0.183362594858092 0.185284880324805 0.193570471425147 0.184673519686390 0.184251733358412 0.188208206149814 0.183362594858092 0.183362594858092 0.190035299822198 0.184326970050955 0.187116811984777 0.185394050558837 0.190623011969968 0.195298460024402 0.187299152270131 0.190439457417248 0.195021182315878 0.190233034702471 4 4 + 10306943 10307448 10307198.727 10304861 10307581 + gene protein_coding_gene FALSE TRUE AT4G18750.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G03580.1); similar to putative pentatricopeptide repeat protein [Gossypium hirsutum] (GB:AAT64030.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83376.1); similar to putative pentatricopeptide repeat protein [Gossypium hirsutum] (GB:AAT64016.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.173128175008019 -2.10820695279331 0.0590281319488472 1 1.2513039266081 4.0384631220992 -0.173128175008019 0.0219906974860302
AT2G25010_at 6.06074651193015 6.15617565457691 6.37364986658455 6.21626752753591 6.53067270990042 6.24965028801999 5.60953834620136 5.90422118966633 5.33742161730777 5.61752502891922 5.54468622937352 5.5477126978279 5.66714353281897 5.6119235758328 5.63044599142076 5.71615448661931 5.72730239884537 5.56533553249567 5.96975479510798 0.221407346862053 0.215381058550242 0.221509349493242 0.217673995030835 0.224644105032509 0.218002017634558 0.217529173883153 0.212461711309125 0.234094552982667 0.211878595021113 0.211878595021113 0.213145536755945 0.216618451066415 0.221909135131167 0.211878595021113 0.217707178741159 0.220885846263787 0.222029007981402 0.214751999352233 2 2 + 10639973 10640583 10640289.5 10638610 10640738 + gene protein_coding_gene FALSE TRUE AT2G25010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17930.1); similar to Os07g0507600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059740.1); similar to H0124B04.19 [Oryza sativa (indica cultivar-group)] (GB:CAJ86302.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAV25047.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) 0.197330290479581 2.10780628522634 0.0590689893422635 1 1.25071399157950 11.7715678631849 0.197330290479581 0.0773319123103138
AT4G19420_at 9.34075589709221 9.56324514982373 10.5484515562471 10.4224069699012 11.0003166275278 10.3089986776964 9.9677846635875 9.5362737061191 8.59236922782577 8.80097359720945 6.70939124615947 4.15418880777111 8.28768421903455 8.11659966875823 4.31024629871397 8.52287760930682 8.67424889371481 7.53875022657093 8.15621329467623 0.220994197509923 0.227074752419943 0.228635187249692 0.228283999982466 0.228885931437091 0.232234138971188 0.228832477388232 0.229881824278057 0.238277765854914 0.225213559534571 0.23745300896177 0.238599635471931 0.232683132207343 0.236162452066294 0.257028506221384 0.222633729335198 0.225144145494921 0.236032159481038 0.226127461432834 4 4|0 -|/ 10587539 10589279 10588692 10587177 10590561 - gene protein_coding_gene FALSE TRUE AT4G19420.1|AT4G19420.2 pectinacetylesterase family protein similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.254620865814632 -2.10744706848504 0.0591056426098118 1 1.25018512250606 17.8639126949115 -0.254620865814632 0.147808430830867
AT1G04080_at 8.76983019370268 8.4960800622505 8.54366233390262 8.21564946402208 8.90273840541707 8.2586207895488 8.7135231592572 8.52157316458552 8.55834840192214 8.46799713009263 8.0898921855852 8.10990857367931 8.28950278240743 8.17642434792599 8.23230203260042 8.3526202445925 8.26836800941557 8.2108331544116 8.65809606524476 0.147154037814321 0.144190514891963 0.145196623501604 0.151787367840417 0.159133898739670 0.149788907586606 0.149372182191546 0.145711583619091 0.159996648834194 0.156589191748258 0.147365548591241 0.147815891432929 0.159799764001299 0.147431435054521 0.147106267859632 0.147564354598889 0.157579405500143 0.163692667969464 0.156216904491487 1 1|0 +|/ 1055852 1056512 1056122.3 1051342 1056750 + gene protein_coding_gene FALSE TRUE AT1G04080.1 hydroxyproline-rich glycoprotein family protein similar to binding [Arabidopsis thaliana] (TAIR:AT5G46400.1); similar to Protein prenyltransferase [Medicago truncatula] (GB:ABE92037.1); similar to Os03g0210400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049340.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.245166506409463 -2.10625513589268 0.0592274176481237 1 1.24843049360865 16.9415656709594 -0.245166506409463 0.137821920778167
AT1G20230_at 2.28964143609113 2.33626800849148 2.18814825152191 2.09082490302928 1.67819122389912 1.81824998596584 1.68383736101265 1.98428152168167 1.90488223143994 2.12948480300554 1.81177759223892 1.63660873800672 1.67548440667516 1.97131627399653 1.88936059852095 1.90122559676036 2.10754281637364 2.14061004107486 2.37531534118988 0.204910363556255 0.209855333536549 0.210555387069509 0.211197820913205 0.215431883766750 0.208209891118532 0.215729375068531 0.204910363556255 0.211262668817725 0.210117993149477 0.217935672151558 0.207839882114889 0.207877561118007 0.205530430814139 0.210205251207730 0.206463623627705 0.208287919661941 0.205436433833542 0.209074184478414 1 1 + 7011333 7011718 7011567.636 7009561 7011843 + gene protein_coding_gene FALSE TRUE AT1G20230.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to Os05g0370000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055349.1); similar to PPR868-14 [Physcomitrella patens] (GB:BAD67154.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.187236762318878 -2.10604198740907 0.0592492191926364 1 1.24811675842959 4.02283111137881 -0.187236762318878 0.0603286086468367
AT1G77130_at 6.53198379699991 6.68474697174421 6.57441577046685 6.57716973569216 6.88549084563258 6.37755331322701 6.5692479819941 5.94108595905174 5.60039953302333 6.31658988791333 6.82508339453613 6.95428680478569 6.03136244245346 6.77791468976718 6.10005247977265 5.99821598088231 6.16375442239644 5.54497160120243 6.00153526060257 0.254762837487302 0.254053790100423 0.253230300121243 0.251132473274864 0.251132473274864 0.254945673279677 0.259902483836114 0.251132473274864 0.270373074152298 0.263421677297370 0.251132473274864 0.254677599750059 0.259273042930201 0.256115082198615 0.252010833523663 0.252859579407847 0.262362870401274 0.263272308447239 0.259589236507962 1 1 - 28984009 28984372 28984207.818 28983788 28986239 - gene protein_coding_gene FALSE TRUE AT1G77130.1 glycogenin glucosyltransferase (glycogenin)-related similar to glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] (TAIR:AT3G18660.1); similar to putative glycogenin [Oryza sativa (japonica cultivar-group)] (GB:AAS90653.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33316.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33317.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.249252452634309 2.10600246183247 0.0592532628361649 1 1.24805858164462 12.6538601905949 0.249252452634309 0.142277061641451
AT3G08660_at 2.62036653857123 2.72340841870415 2.63333175018642 2.71940021237199 2.59098581770625 2.70419578098332 3.23086738790919 3.38961449724375 3.07951745033108 3.9422183992096 3.92059723581435 3.34089505015239 3.59003544123482 3.44539982865877 3.36168071890787 3.21063219674168 3.32435851939181 3.80243830856368 3.56040211199599 0.190818401709437 0.193183028548531 0.194542092981479 0.194634073992003 0.192079848734417 0.197233255201242 0.192814446384385 0.193036991295152 0.199338623502120 0.190279910519284 0.195240675573604 0.191597970828686 0.192797540056642 0.200261444460646 0.197509355257940 0.196606068329526 0.198421292398593 0.195215835569298 0.193234534379545 3 3|0 +|/ 2632519 2633077 2632800.6 2631136 2633172 + gene protein_coding_gene FALSE TRUE AT3G08660.1 phototropic-responsive protein, putative similar to phototropic-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT3G08570.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16690.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.178480239187068 -2.10588648757448 0.0592651290293443 1 1.24788788409879 6.33996329193224 -0.178480239187068 0.0409677630552133
AT1G07510_at 7.46793228646693 7.83374605666639 7.82325870934857 8.03008861466708 7.67723026204121 7.85610414397036 7.6885702890975 8.10510866194958 7.87802117060484 8.03551689334802 7.37170815484609 7.30267371891452 7.59251031982175 7.45758399554812 7.05245905498436 7.82663872090356 7.55315548646992 7.47742982849223 7.979005662015 0.145897733449673 0.144197291856465 0.143116554727364 0.146380727544676 0.144600108143774 0.144296455431270 0.154883239327808 0.142496019541182 0.161776676553556 0.150517813372437 0.151281293331833 0.148824672340255 0.139263444987050 0.155690767834824 0.152019241728937 0.14069075005451 0.140109222298455 0.144347360168982 0.144326168864357 1 1 + 2308406 2309353 2309061.455 2305375 2309541 + gene protein_coding_gene FALSE TRUE AT1G07510.1 FTSH10 (FtsH protease 10); ATPase encodes an FtsH protease that is localized to the mitochondrion similar to FTSH3 (FtsH protease 3), ATP-dependent peptidase/ ATPase [Arabidopsis thaliana] (TAIR:AT2G29080.1); similar to AAA ATPase; Bacterial luciferase-like; Peptidase M41, FtsH extracellular [Medicago truncatula] (GB:ABE82014.1); similar to AAA-metalloprotease FtsH [Pisum sativum] (GB:AAK77908.1); similar to AAA ATPase; Peptidase M41, FtsH extracellular [Medicago truncatula] (GB:ABE78727.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.218540111515007 -2.10556966749913 0.0592975567209664 1 1.24742158761383 15.5194804540194 -0.218540111515007 0.106972198342595
AT4G35910_at 3.65899559517392 4.0725289527455 3.28394929544470 3.32991093718115 4.22997216233028 3.86089812819806 4.33127035940507 4.21228555965297 3.62194849526462 3.40216647574665 3.24054117132682 3.69017470066903 3.43858503248148 3.2790477821532 3.50332744307841 3.42936357670267 3.22333290301047 3.38536764295676 3.26537907271396 0.241546132387271 0.237398928141943 0.243278718590238 0.238683542093911 0.233563863062324 0.244224999668175 0.234018812646289 0.237564173362607 0.263115814891047 0.236336960391156 0.241886527832303 0.233563863062324 0.240577277030726 0.235922259886919 0.251855492295396 0.237435385896858 0.250698571902478 0.242007546196640 0.237473052098791 4 4|0 -|/ 17009094 17009753 17009307 17008570 17011512 - gene protein_coding_gene FALSE TRUE AT4G35910.1 similar to Os12g0588900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067163.1); similar to hypothetical protein LOC614194 [Bos taurus] (GB:NP_001030521.1); contains domain no description (G3D.3.40.50.610); contains domain FAMILY NOT NAMED (PTHR20882); contains domain SUBFAMILY NOT NAMED (PTHR20882:SF1); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402) -0.211850651158436 -2.10512934395204 0.0593426533233828 1 1.24677356082527 7.28675081349434 -0.211850651158436 0.0984276960613815
AT1G52770_at 1.94954913837100 2.25315638827587 1.67654453363384 1.36091032053555 1.3583330560727 1.34411486820048 1.49836139016336 1.17815575725010 2.65317615457223 1.54638186970274 1.41117583538732 1.94547533630080 1.5460853989336 1.63128209895469 2.03655316197869 1.45653459468961 1.88607526412221 2.02721134449952 1.42440404880093 0.175754970692684 0.173249677237491 0.174752553862273 0.168722192105734 0.17846160792976 0.173319157889662 0.172951134679098 0.180448692277202 0.178317026719617 0.176617151811387 0.168722192105734 0.178206394820788 0.17726814575387 0.170227601686925 0.176206910631071 0.168722192105734 0.177707459324386 0.173390568198477 0.173511534167395 1 1 + 19660666 19661130 19660851.727 19659507 19661402 + gene protein_coding_gene FALSE TRUE AT1G52770.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G15570.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77355.1); contains InterPro domain NPH3; (InterPro:IPR004249) -0.208467434452384 -2.10490718682001 0.0593654182963589 1 1.24644662956725 3.38599225842133 -0.208467434452384 0.0939188120857305
AT3G56480_at 1.71613265421888 1.90554017822049 1.64761792706732 1.17511846492254 1.17133440602217 1.16693029558536 1.19261001373388 1.49315774872033 1.74620225419773 1.71896538637403 2.98336105654122 3.01532644703637 1.81009163226928 2.36184553152986 3.44257541789739 1.94629879545523 1.39617633581555 2.29907152143468 1.60694454983581 0.214000884000234 0.219664626206217 0.220554017045496 0.228248560206042 0.213685701328639 0.217944715862843 0.212863012689917 0.211111525744243 0.210565811789727 0.223595816994199 0.216317903754589 0.214643886041009 0.216299022628125 0.221395406339160 0.219870827344981 0.210565811789727 0.226270555350742 0.211648204926237 0.225508120927265 3 3|0 -|/ 20947618 20948472 20948019.667 20947077 20950610 - gene protein_coding_gene FALSE TRUE AT3G56480.1 myosin heavy chain-related similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT2G40820.1); similar to plectin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68172.1); similar to Os01g0805700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044563.1) 0.214764701727104 2.10457004608833 0.0593999816973225 1 1.24595050994085 3.48232891391969 0.214764701727104 0.102304333367588
AT1G26520_at 2.79787097307411 2.96479737446691 3.09256461326356 3.30596070906629 3.30535344976252 3.38295680891415 3.24292608499883 2.64858146465322 2.18164807769864 2.17158733961518 2.23466380085850 2.09684815901825 2.21071402587490 2.27452830812792 2.65042473176696 2.53714648082667 2.53058363808741 2.16582102830426 2.39002004189591 0.235818492562899 0.239893338025235 0.237407242547901 0.235818492562899 0.238616976855456 0.239186466215132 0.244675120674964 0.238601488742768 0.243577723765111 0.243183006936003 0.238649556007072 0.235818492562899 0.235818492562899 0.25187354879572 0.248287250943944 0.239598160122854 0.241963087611997 0.240792413358423 0.237212563189911 1 1 - 9163773 9165168 9164628.8 9163233 9165887 - gene protein_coding_gene FALSE TRUE AT1G26520.1 similar to PRLI-interacting factor L, putative [Arabidopsis thaliana] (TAIR:AT1G15730.1); similar to Os07g0598900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060185.1); similar to COBW domain containing protein1 [Gallus gallus] (GB:NP_001026607.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW, C-terminal; (InterPro:IPR011629); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) 0.224002186412447 2.10449811030211 0.0594073589611014 1 1.24584465654123 5.38529798044729 0.224002186412447 0.113831317684220
AT1G79470_at 3.97933721668589 3.86040414739122 4.12525367925494 3.98996817334532 3.25725061884046 3.94065192394546 4.1607931021972 3.99256370283206 3.1636100668301 3.43075512601829 3.13828864751064 2.87283616254121 3.25506064525369 2.75058681893969 3.21005854773455 3.22365605855061 3.49768959180904 2.85407285489709 3.60123980365419 0.209755213889641 0.208904364104150 0.216961838700823 0.210120926680561 0.217347755616952 0.214210381525004 0.218280397550605 0.216587648258985 0.224446842532257 0.209309911969793 0.219591583083418 0.207202442538738 0.208061146226169 0.215656025809509 0.209231614602957 0.207202442538738 0.221128417485337 0.21766219657914 0.214584128135256 1 0|1 /|- 29899713 29900307 29900072.889 29899491 29901650 - gene protein_coding_gene FALSE TRUE AT1G79470.1 inosine-5'-monophosphate dehydrogenase Identical to Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD) (IMPDH) [Arabidopsis Thaliana] (GB:P47996); similar to inosine-5'-monophosphate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G16350.1); similar to inosine monophosphate dehydrogenase [Glycine max] (GB:CAB38030.1); similar to inosine monophosphate dehydrogenase [Vigna unguiculata] (GB:AAO40253.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain IMP dehydrogenase; (InterPro:IPR005990); contains InterPro domain IMP dehydrogenase/GMP reductase; (InterPro:IPR001093) -0.234123638179838 -2.10448295593282 0.0594089132046349 1 1.24582235707797 7.16268590293095 -0.234123638179838 0.125722244220611
AT1G63940_at 8.91403739871588 9.03583984319389 8.51766444813662 8.61308280618 8.61410715674873 8.39437153589868 9.52134585785998 9.63015977659623 8.86694614234125 8.95177103757115 9.28823651494606 9.76531793194614 8.91037225187112 9.29706928732973 9.77640096963848 8.86390888109307 8.64634562092774 9.36849998923579 8.7708446310961 0.107548886983298 0.108671998354338 0.123503603459907 0.111844240771199 0.106682595191827 0.116572871138816 0.111161945389641 0.109456869014157 0.109721793157796 0.109374023419958 0.103768647514306 0.108926393761841 0.106564391337107 0.111776027062475 0.108708589547499 0.106014329861772 0.120065380842787 0.105727515951060 0.108139442512722 1 1|0 +|/ 23735939 23737171 23736445.375 23733642 23737555 + gene protein_coding_gene FALSE TRUE AT1G63940.1|AT1G63940.2|AT1G63940.3|AT1G63940.4 monodehydroascorbate reductase, putative Identical to Monodehydroascorbate reductase, chloroplast precursor (EC 1.6.5.4) (MDAR) [Arabidopsis Thaliana] (GB:P92947;GB:Q94CE2;GB:Q9CAK5); similar to monodehydroascorbate reductase, putative [Arabidopsis thaliana] (TAIR:AT5G03630.1); similar to monodehydroascorbate reductase [Spinacia oleracea] (GB:BAB63925.1); similar to monodehydroascorbate reductase [Brassica juncea] (GB:AAD28178.1); similar to monodehydroascorbate reductase [Brassica oleracea] (GB:BAD14933.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027)|Identical to Monodehydroascorbate reductase, chloroplast precursor (EC 1.6.5.4) (MDAR) [Arabidopsis Thaliana] (GB:P92947;GB:Q94CE2;GB:Q9CAK5); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] (TAIR:AT3G52880.1); similar to monodehydroascorbate reductase [Spinacia oleracea] (GB:BAB63925.1); similar to monodehydroascorbate reductase [Brassica juncea] (GB:AAD28178.1); similar to monodehydroascorbate reductase [Brassica oleracea] (GB:BAD14933.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.182103785906565 -2.10393561007190 0.0594650752002697 1 1.24501698375657 17.9564292035211 -0.182103785906565 0.0501753220723995
AT3G23700_at 11.0309667742730 11.1181372227394 10.8850348447241 10.9001340194640 11.0953279087537 11.0868031346348 11.4928295517800 11.4594522594315 11.2117190914370 11.4815922272879 11.5020332028031 11.3451637506688 11.2823124994352 11.1516301386704 11.3890842781073 11.3742502796500 11.2511060656378 11.1307680876482 11.3963119905373 0.0780417425486007 0.0776518683606426 0.081976981876139 0.0775145767908245 0.0814265054663303 0.08568639335038 0.0812780865024895 0.078399629580951 0.0933168616489277 0.0784409092743951 0.080587479246076 0.0773998245759728 0.0800392349352782 0.0817216691565593 0.0842840801387763 0.0773998245759728 0.0849942350711567 0.085223147458364 0.0796346558437123 3 3|0 -|/ 8531705 8532935 8532305 8531436 8533795 - gene protein_coding_gene FALSE TRUE AT3G23700.1 S1 RNA-binding domain-containing protein similar to RPS1 (ribosomal protein S1), RNA binding [Arabidopsis thaliana] (TAIR:AT5G30510.1); similar to putative ribosomal S1 protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07358.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.171717853544127 -2.10331733466060 0.0595285755323097 1 1.24410733541067 22.4668363682659 -0.171717853544127 0.0164296129044062
AT3G25570_at 6.21725390108592 6.5783658639731 6.03316285674689 6.19235870042551 6.27317714441143 6.03489336896983 7.90671888729455 6.99657784934324 5.6865897589664 5.90977836661648 5.36633226555773 6.19094607110588 6.16832783841158 5.80590117264288 4.96958588654195 7.07523518587477 7.33157510937398 5.71573937336121 5.95767749288493 0.204914156514324 0.208976147451108 0.212248694818180 0.208544040540656 0.211192319730521 0.207335605577828 0.208466724219164 0.212670307905335 0.226831609258043 0.207131065553627 0.205871653822790 0.201557080072556 0.212688751685844 0.207751231772782 0.214768503415194 0.207240814151099 0.217124201642579 0.201557080072556 0.212938788254245 3 3 - 9288650 9289152 9288864.818 9288470 9290575 - gene protein_coding_gene FALSE TRUE AT3G25570.1 adenosylmethionine decarboxylase family protein similar to SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT3G02470.3); similar to S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] (GB:Q9M4D8); contains InterPro domain S-adenosylmethionine decarboxylase; (InterPro:IPR001985) -0.282362142208155 -2.10312666695939 0.0595481711048234 1 1.24382683193958 12.4937155227053 -0.282362142208155 0.176556558744770
AT1G07160_at 2.83445211779921 2.99498338835978 3.28013710901161 3.60965474765879 2.32475793197702 2.91397390216303 2.65902018336803 2.76881839956417 3.37465537310362 3.66333079007067 2.83757604039674 2.89994968232706 2.76311630928065 2.96984210240999 2.5248095115502 2.64880009053297 3.13655020700547 3.28019010676991 3.64531485893904 0.206186368731125 0.205094889222283 0.204576962084479 0.210134297442670 0.210613003768098 0.200509388793413 0.202834213411176 0.209983999275596 0.206162940803040 0.206717883091250 0.211077762609238 0.203551911583157 0.20638395168279 0.203460830348008 0.204388378002234 0.202563455113832 0.205718965713420 0.200509388793413 0.207133579310029 1 1|0 -|/ 2198160 2198721 2198419 2197907 2199747 - gene protein_coding_gene FALSE TRUE AT1G07160.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G30020.1); similar to protein phosphatase 2C [Medicago sativa] (GB:CAA72341.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.230341841995254 -2.10272248933616 0.0595897299997688 1 1.24323225101905 6.14507702098199 -0.230341841995254 0.121580387654685
AT2G21240_at 9.43678079499658 9.88989308856966 9.72232993485043 9.86157261792581 10.2028828657508 9.9779619347166 9.49164202293337 9.63902480892408 9.4949525421703 9.12658765263022 9.4935920665861 9.47515178503397 9.49772873408515 9.44844735299101 9.15674214056422 9.4250118723035 9.40729991125943 9.37705160976678 9.33839257617006 0.122626435659669 0.118120420942881 0.120121516324334 0.117442781108534 0.117537847411117 0.122384983662535 0.116280462609628 0.120483114247643 0.124855499164038 0.123589754510999 0.117686851859277 0.118970335236149 0.118431457768442 0.123242361316697 0.129423125245394 0.116433856715468 0.133895040096917 0.127794915543383 0.124188300372211 2 2 - 9108598 9109171 9108881.636 9108394 9110127 - gene protein_coding_gene FALSE TRUE AT2G21240.1|AT2G21240.2 ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor|ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4) similar to ATBPC5/BBR/BPC5/BPC5 (BASIC PENTACYSTEINE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G38910.1); similar to GAGA-binding transcriptional activator [Medicago truncatula] (GB:ABL10371.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.208501126602619 2.1023302345509 0.0596300891784395 1 1.24265524952480 19.1428138957821 0.208501126602619 0.094312471577597
AT2G21170_at 11.0214299326716 11.1103269993289 10.8750918057280 10.8540002950309 10.8219731880029 10.7559917031158 11.7075008700327 11.6296520253127 11.7698029497965 11.7939276066293 12.1419401177410 12.15296501598 11.5824395493717 11.8654540596542 12.1772767307746 12.0716513444078 11.6682429246971 11.8758298661413 11.6788378461625 0.0637392349642504 0.0598967704538393 0.061281882414563 0.0599074216191387 0.0600556211417209 0.0627875584056282 0.0587642310098042 0.0635397659013668 0.0671751230650692 0.0641014939936586 0.0587642310098042 0.0591514088099034 0.0607025150951186 0.0635465447297973 0.06197856016634 0.0587642310098042 0.0591188056335061 0.0619360031247966 0.0621114521094408 2 2|0 -|/ 9078466 9079154 9078702.556 9077835 9080314 - gene protein_coding_gene FALSE TRUE AT2G21170.1|AT2G21170.2 TIM (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase|TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes a nuclear triosephosphate isomerase. Identical to Triosephosphate isomerase, chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase) (TIM) [Arabidopsis Thaliana] (GB:Q9SKP6); similar to ATCTIMC (CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE), triose-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT3G55440.1); similar to Triosephosphate isomerase, chloroplast precursor (TIM) (Triose-phosphate isomerase) (GB:P48496); contains InterPro domain Triosephosphate isomerase; (InterPro:IPR000652) -0.173005529316947 -2.10223318470599 0.0596400786464723 1 1.24251249657772 22.9417447283823 -0.173005529316947 0.0237037763694765
AT2G23760_at 8.1357451964539 8.79546940564146 8.76363107657567 8.99894648601547 9.55777458295477 9.25773682814877 8.83300994996867 9.17044223053823 9.24500692629789 8.99368914178554 9.78916426781623 9.53860192318366 9.74723081020277 9.09179268009283 8.97427050527694 9.13768405496207 8.31644877580765 9.14087931325964 9.14125694461915 0.166727943001128 0.143340744518035 0.167532741435176 0.15001784758647 0.144871848195893 0.159261942974934 0.155973209478095 0.143642005829509 0.159472614272774 0.153552935580564 0.143340744518035 0.143340744518035 0.147555469679662 0.165556772946586 0.152884431539470 0.147631650443687 0.195717287895487 0.160237494896896 0.146132752611674 2 2|0 -|/ 10115049 10117730 10115596.222 10114789 10120293 - gene protein_coding_gene FALSE TRUE AT2G23760.1|AT2G23760.2|AT2G23760.3 BLH4 (BLH4); DNA binding / transcription factor|BLH4 (BLH4); DNA binding BEL1-like homeobox 4 (BLH4) similar to BLH2 (BEL1-LIKE HOMEODOMAIN 2), DNA binding [Arabidopsis thaliana] (TAIR:AT4G36870.2); similar to homeodomain protein [Malus x domestica] (GB:AAF43095.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.250606792432071 2.10216859122824 0.0596467282152464 1 1.24241748581423 18.1109244923168 0.250606792432071 0.144217217014738
AT1G69960_at 7.99628461853367 8.2146476581498 8.22490040898554 8.20710740866486 8.75095150473864 8.19829352522415 8.30960235034065 7.9040318768371 7.88132275384328 7.12583151584581 7.90645507969754 8.04595436106507 7.40691025937275 7.75011623732651 7.37404077827466 7.67413991941376 7.3127391740337 7.53641342717355 7.19098836459682 0.185416146922759 0.180684820376442 0.187983024132714 0.188785804704347 0.192576267253911 0.197210889086273 0.183725490376548 0.186313047207488 0.182572709270175 0.184687445879461 0.181375398465277 0.174449630199791 0.179757426536697 0.187628934923106 0.201243000845142 0.183322728467712 0.199669576908501 0.179705873494328 0.182650708770167 1 1 - 26352564 26353215 26352870.091 26352384 26354360 - gene protein_coding_gene FALSE TRUE AT1G69960.1 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A); protein phosphatase type 2A type 2A serine/threonine protein phosphatase (PP2A) mRNA, Identical to Serine/threonine-protein phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16) (PP2A5) [Arabidopsis Thaliana] (GB:O04951;GB:Q42544); similar to PP2A-2 (protein phosphatase 2a-2), protein phosphatase type 2A [Arabidopsis thaliana] (TAIR:AT1G10430.1); similar to PP2A-1 (protein phosphatase 2A-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G59830.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.232818431193691 2.10199689748805 0.0596644066183894 1 1.24216494609836 15.7383409352543 0.232818431193691 0.124541330166500
AT4G21630_at 1.07388582389487 1.20855071056079 1.09234184506045 1.07773566875521 1.02003094883073 1.17492855870876 0.70935257689477 1.12404252381851 0.875214977844966 0.82853540009495 1.05059964596961 1.47140379789186 1.38750373013486 0.683074720888115 1.12256495004971 1.11435970499283 1.23163736613908 1.22924010157962 0.77605566774691 0.216424470273709 0.215507611505157 0.21621897808393 0.208504220271005 0.212042495890208 0.217242370649119 0.207298680938422 0.215015427746513 0.210474110681619 0.210369211022242 0.208915200690079 0.205304342735970 0.205304342735970 0.218666884978309 0.212673860391371 0.213419399024362 0.211816387551231 0.216176137275227 0.210508332101675 4 4 - 11492399 11492703 11492550 11492260 11495512 - gene protein_coding_gene FALSE TRUE AT4G21630.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21640.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32960.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21650.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.198498666761660 2.10107983689877 0.0597589154819366 1 1.24081619393057 2.05405859078284 0.198498666761660 0.0801130943393183
AT1G06140_at 1.77136746599221 1.84497989666549 1.81843300684796 1.78507263370478 1.47963161646546 1.84622913433677 1.80911451850481 1.83606076090776 1.76098481806772 2.17909773545348 1.55580977277175 1.7362203422875 1.56348319539672 1.20726424294059 1.73984908786553 1.42827147656871 2.01099318890407 1.93645881269454 1.88895661728558 0.19467715513734 0.188987373672297 0.188374124643594 0.193893461744911 0.190963459120624 0.198100579197277 0.192388304956056 0.187615926837166 0.192272359181616 0.194869251926491 0.192938417907685 0.195538992168595 0.196944216404866 0.203372670826932 0.199152939216783 0.190941779392731 0.188178961308419 0.205424095548463 0.187615926837166 1 1 + 1865883 1866438 1866194.636 1864795 1866471 + gene protein_coding_gene FALSE TRUE AT1G06140.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2758 (EMBRYO DEFECTIVE 2758), binding [Arabidopsis thaliana] (TAIR:AT4G33990.1); similar to unknown [Sorghum bicolor] (GB:ABE77204.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.189379177342869 -2.10090167229088 0.05977729288195 1 1.24055418615077 3.56901454011029 -0.189379177342869 0.0651319326554698
AT3G20060_at 9.16990339138234 9.52147306922008 9.22491829653014 9.39038027052155 9.38269074524334 9.27601385027948 9.48093842979466 9.5044759742479 9.30948163045896 9.48966432357723 9.24191786381941 9.00737612254752 9.26084009752807 9.09911816939614 9.0497212001386 9.44407499017777 9.0035940034622 9.13605523059555 9.51720232184451 0.122358074786113 0.121063781127759 0.125617741562544 0.133281105717815 0.126942502379452 0.122584757965115 0.125720920423452 0.123105800687992 0.132229846643814 0.125760832773018 0.131379311646291 0.125310701157787 0.131049783664354 0.131349721749227 0.126866882920985 0.122379997903377 0.127910608240046 0.130479373818286 0.123169686449965 3 3|0 -|/ 7002936 7004249 7003595 7002823 7004456 - gene protein_coding_gene FALSE TRUE AT3G20060.1|AT3G20060.2 UBC19 (ubiquitin-conjugating enzyme 19); ubiquitin-protein ligase|UBC19 (ubiquitin-conjugating enzyme 19) Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus. similar to UBC20 (ubiquitin-conjugating enzyme 20), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G50490.1); similar to hypothetical protein DDBDRAFT_0206182 [Dictyostelium discoideum AX4] (GB:XP_641954.1); similar to Os01g0273100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042713.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -0.192071237218183 -2.10072395929844 0.0597956290224604 1 1.24029285060977 18.6659092375700 -0.192071237218183 0.0698491326224934
AT1G45474_at 10.6972334785677 10.6792336940266 10.5003368752473 10.5259198950901 10.9304428724301 10.4510714862100 11.4637579386292 11.3167724649129 11.4533640825706 11.4064474573883 11.4620713166830 11.4675241461558 11.2790610239967 11.4725903147233 11.3170866381309 11.4172715197354 11.3584280645694 11.3777934051124 11.2285233191623 0.0769494216780637 0.073704349438435 0.0779952073962195 0.0758220806224414 0.0777176546223803 0.0784518317432955 0.0772514265494674 0.0736072038259666 0.082379044289593 0.0753222508893703 0.0777410697567835 0.0753937265341892 0.0776299953300113 0.082229340470328 0.0744621283096908 0.0736353403661452 0.0801585773394455 0.0759962108196725 0.0767520209767904 1 1|0 +|/ 17182121 17182840 17182591.6 17181742 17183246 + gene protein_coding_gene FALSE TRUE AT1G45474.1|AT1G45474.2 LHCA5 (Photosystem I light harvesting complex gene 5) Encodes a component of the light harvesting complex of photosystem I. similar to LHCA4 (Photosystem I light harvesting complex gene 4), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G47470.1); similar to light-harvesting chlorophyll-a/b protein of photosystem I [Chlamydomonas reinhardtii] (GB:BAD06921.1); similar to Os02g0764500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048216.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.203053297262542 -2.10053622482151 0.0598150049404936 1 1.24001678677646 22.1989743831453 -0.203053297262542 0.0869382502576212
AT4G04340_at 10.7110713399292 10.7994960765729 10.5714038584103 10.5019616961142 11.1291952886309 10.9107111970478 10.8565867231834 10.8797500794781 10.2472257478707 10.4246652881607 10.9077432267396 10.7187306856329 10.6795748765568 10.8500000389895 10.6256126315852 10.4277391545299 10.4007017182306 10.7155421114543 10.1530097860648 0.101288805687546 0.096467782066013 0.105698490822574 0.104315359807948 0.0974549926371135 0.100790292530310 0.101154325383046 0.0976965302614873 0.110267130138283 0.0963594056659915 0.0977391712198778 0.0984143235268648 0.100234422594703 0.0989231165260154 0.103970402521181 0.096801274056227 0.111743657305292 0.0978267012612453 0.0975047300811443 4 4|0 +|/ 2125851 2126568 2126168.111 2122683 2126842 + gene protein_coding_gene FALSE TRUE AT4G04340.1|AT4G04340.2|AT4G04340.3 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G62320.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.178665285012994 2.10024560031406 0.0598450117620726 1 1.23958944080416 21.2653582805026 0.178665285012994 0.0427108542142994
AT1G54150_at 6.56403042596987 7.36461066079148 6.65354698684664 6.4612207808939 6.62401324083549 6.42542742815228 5.62760807480415 6.04578118529784 6.59735110600026 5.4801888595687 5.41633731224658 5.38827542443324 5.3725593258481 5.22101427131979 4.89935131274836 5.31542450301408 5.18636608279581 5.05581211714823 5.65286588083427 0.234757165242393 0.234587870031571 0.238046228542016 0.234540340244841 0.233252152395022 0.242449737747398 0.24440473439576 0.22977323445379 0.247036038229079 0.236827147628592 0.229606078609613 0.228531499598566 0.228100195723025 0.232073551702174 0.228100195723025 0.2391579233614 0.245587480701395 0.239952915567415 0.231698313836918 1 1|0 +|/ 20220037 20220915 20220537.889 20219099 20221151 + gene protein_coding_gene FALSE TRUE AT1G54150.1 zinc finger (C3HC4-type RING finger) family protein similar to ZCF61, protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G59560.1); similar to C3HC4 zinc finger containing protein [Medicago truncatula] (GB:CAJ00009.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.268849107986946 -2.10008313005539 0.0598617929298427 1 1.23935054742914 12.0417937608633 -0.268849107986946 0.163463221430880
AT3G03080_at 1.55779568920611 1.46260670664393 1.78924576293369 1.81365619193775 1.53515977178379 1.73291793989327 1.48605741654159 1.45830030224837 1.27794805310134 1.13251315776360 1.56272629224218 1.53258946665191 1.83575022019179 1.39947755768074 1.34261138486169 1.18360086858318 1.60944432633105 1.24174756415703 1.59715076042525 0.19639994493955 0.195880937703891 0.203647943077351 0.203102252633798 0.198289517291476 0.205670540976462 0.198529698400583 0.197699061085776 0.204786863819693 0.216445518917782 0.203218354586186 0.204190443780846 0.199849490540328 0.201682695971838 0.199524562633659 0.196084136860631 0.19763451446286 0.198977517737276 0.204174589108135 3 3|0 -|/ 698538 699262 698800 698537 700308 - gene protein_coding_gene FALSE TRUE AT3G03080.1 NADP-dependent oxidoreductase, putative similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G17000.1); similar to AT-AER (ALKENAL REDUCTASE), 2-alkenal reductase [Arabidopsis thaliana] (TAIR:AT5G16970.1); similar to allyl alcohol dehydrogenase [Nicotiana tabacum] (GB:BAA89423.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149) 0.177088845483921 2.09996708874979 0.0598737812848894 1 1.23917992650206 3.00414953124065 0.177088845483921 0.0385160600219798
AT1G32400_at 9.70571073678253 9.78052225817407 10.1225949148031 10.1092751192243 10.6065814541917 9.99899606115479 10.1598383588250 10.1643776665409 10.1119597508681 9.65485137939885 10.2511986864691 9.83396014673785 10.1600624108697 10.0940742504674 10.0661010655750 9.98246951899636 9.56374549251425 10.2366289484161 9.77127032897084 0.102661044453849 0.099774022307692 0.104552911908043 0.0982017868370308 0.0996359043249978 0.110984462043668 0.0962587222946491 0.0975542372553372 0.0999804371814205 0.102947513616636 0.0962587222946491 0.0962587222946491 0.096941762258275 0.100688218491455 0.096729111596132 0.0962587222946491 0.107968766627159 0.0989998637979699 0.0981315478239183 1 1|0 -|/ 11689373 11690457 11689833.3 11689088 11691511 - gene protein_coding_gene FALSE TRUE AT1G32400.1|AT1G32400.2|AT1G32400.3 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20230.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE93060.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.217126272094640 2.09962584664407 0.0599090485374448 1 1.23867820237340 20.0157656802545 0.217126272094640 0.105967518511049
AT1G70210_at 1.89864233801809 1.99179567664281 1.15488920812561 1.39716956852292 1.42639833364395 0.97396875957254 1.985405398649 1.50746767182625 1.83753966017121 1.60817309072589 3.20601147427486 3.78129475291565 2.60954506791690 2.8276364470016 3.63071928451882 2.96528632690312 1.84854217998779 2.12756103702711 1.97053237843789 0.212906944958543 0.21261872132317 0.21261872132317 0.21261872132317 0.217726414563651 0.219976447802058 0.214286992913137 0.21261872132317 0.213499288711828 0.223320860554721 0.21261872132317 0.219790338776684 0.214782314590124 0.219106530049362 0.238446638347566 0.21261872132317 0.215282458456359 0.21261872132317 0.213956797508664 1 1 + 26444778 26445541 26445195.909 26443527 26446492 + gene protein_coding_gene FALSE TRUE AT1G70210.1 CYCD1;1 (CYCLIN D1;1); cyclin-dependent protein kinase regulator Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination. Identical to Cyclin delta-1 (CYCD1) [Arabidopsis Thaliana] (GB:P42751;GB:O04525); similar to CYCD2,1 (CYCLIN D2,1), cyclin-dependent protein kinase regulator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G22490.1); similar to cyclin D1 [Helianthus tuberosus] (GB:AAL47479.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.230719112194392 2.09952113013762 0.0599198748897538 1 1.23852424495302 3.88196192659009 0.230719112194392 0.122428598866938
AT2G33240_at 0.670319976687347 0.778035501595669 0.629903138147819 0.790232288110082 0.576320020097542 0.699572370616842 0.469357819041425 0.844687893226414 1.10816682507782 1.22047500438499 0.821174168912173 1.15834557310565 0.715585640659003 0.400059504813922 0.598829615724565 0.770782275332733 0.712416507548716 0.600720306341483 0.962186748590133 0.222964472015588 0.223431416518161 0.225313358647924 0.226406054715057 0.229937221883080 0.222964472015588 0.222964472015588 0.229891231630006 0.222964472015588 0.224627573709982 0.22625600786204 0.226624819716437 0.223906459546221 0.225767577972607 0.222964472015588 0.230098488418987 0.231832925722874 0.231332349271363 0.223562293738036 2 2|0 -|/ 14094025 14095254 14094580.714 14094019 14103991 - gene protein_coding_gene FALSE TRUE AT2G33240.1 XID (Myosin-like protein XID); motor/ protein binding member of Myosin-like proteins similar to XIA (Myosin-like protein XIA), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G04600.1); similar to MYA2 (ARABIDOPSIS MYOSIN) [Arabidopsis thaliana] (TAIR:AT5G43900.1); similar to XIB (Myosin-like protein XIB) [Arabidopsis thaliana] (TAIR:AT1G04160.1); similar to myosin subfamily XI heavy chain [Petroselinum crispum] (GB:AAK21311.1); similar to putative myosin subfamily XI heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD21517.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71528.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.195648501845420 -2.09818117762088 0.0600585722783105 1 1.23655445412777 1.59189465514327 -0.195648501845420 0.0760991778008823
AT1G29310_at 6.31232140781034 6.73630195611088 6.74391551032894 6.64534627591703 5.67850226967004 5.31110776126465 4.39890958749174 4.95479949231322 4.09849538209535 4.03487036690592 3.9399736610741 4.94859216066063 3.44595630417566 4.30123990571306 4.77284671015263 3.57698027518383 3.39199732759786 3.70467774276593 3.91550081310036 0.230088649289942 0.230066236310639 0.241709994359160 0.238157455725149 0.234192289446879 0.235205738082338 0.229633892754219 0.241632002406887 0.250416256001277 0.232130146060295 0.23020446159216 0.238548539056914 0.23445723789467 0.231707114998411 0.230831724867341 0.232382960115018 0.238933420661597 0.229633892754219 0.231895981238386 1 1|0 +|/ 10253669 10254482 10254132 10252280 10254676 + gene protein_coding_gene FALSE TRUE AT1G29310.1 protein transport protein sec61, putative similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G78720.1); similar to protein translocase [Arabidopsis thaliana] (TAIR:AT2G34250.2); similar to putative integral membrane protein [Phaseolus vulgaris] (GB:AAF18411.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE84066.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE85367.1); contains InterPro domain SecY protein; (InterPro:IPR002208) 0.244064500122602 2.09746623493597 0.0601326995281402 1 1.23550364481336 9.86093646508803 0.244064500122602 0.137735391973314
AT3G57100_at 1.28170684983222 1.17184938714384 1.72326504235639 1.98128386906783 1.41562213282173 1.69864130247823 1.11245883825167 1.18671114380623 1.24639840231510 1.50691448705826 1.12444856888896 0.858482447757114 1.11996973164227 1.19516964908436 1.31758014990938 1.46212686046385 1.46465740079501 1.02394544485710 1.2323165182177 0.214086912600176 0.215748309649518 0.221765252705068 0.21691503092128 0.214373230693982 0.220765751510445 0.211296251124817 0.214983149701707 0.219580858840887 0.213522142486969 0.216527008696782 0.213667803468020 0.213298682043337 0.214217094278387 0.212686839391052 0.211296251124817 0.217248395281634 0.215532072682429 0.213460144891160 3 3 - 21144240 21144674 21144466.545 21143992 21145461 - gene protein_coding_gene FALSE TRUE AT3G57100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34320.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE78510.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) 0.191887963866813 2.09686630742320 0.060194968411639 1 1.23462198413401 2.70861265448899 0.191887963866813 0.0701363956068678
AT4G28710_at 3.27315128924133 2.80396724946756 3.4686862723788 2.99923417749842 3.76400275633155 2.92562881830602 2.83085628032568 2.04783972720970 2.97275919563916 2.25549274963516 2.6083900779179 2.90420425118818 2.21852517591267 2.38649882094583 2.51354352101320 2.53468866179358 2.71239279708785 3.12198389655101 2.27328380826516 0.198790704260279 0.203899351645174 0.204101056558292 0.197501877068943 0.212453840584970 0.205440172383981 0.198275986726932 0.205462351452171 0.198654604088501 0.199754561985487 0.201791611037282 0.205059731060723 0.207581683080252 0.203652705695346 0.204694980460593 0.197501877068943 0.207160227300807 0.206380441886902 0.201409636822035 4 4|0 +|/ 14177276 14178010 14177679.3 14172004 14178054 + gene protein_coding_gene FALSE TRUE AT4G28710.1 XIH (Myosin-like protein XIH) member of Myosin-like proteins similar to XIG (Myosin-like protein XIG), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT2G20290.1); similar to MYA2 (ARABIDOPSIS MYOSIN) [Arabidopsis thaliana] (TAIR:AT5G43900.1); similar to XIB (Myosin-like protein XIB) [Arabidopsis thaliana] (TAIR:AT1G04160.1); similar to myosin subfamily XI heavy chain [Petroselinum crispum] (GB:AAK21311.1); similar to putative myosin subfamily XI heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD21517.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71528.1); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.33747542601121 2.09682165268572 0.0601996057423989 1 1.23455636270150 5.57694098041877 0.33747542601121 0.229354870950740
AT3G61900_at 4.37043197506039 5.43239614691296 5.7061950436049 6.22280742950712 5.94468847033593 6.0636822100304 4.76998928226244 5.82041473300693 4.56403734851034 5.16294734464406 4.51043437356005 3.79706737264011 4.68866465309464 4.94558748455348 3.37850789327535 5.19048694762868 5.49223564850977 4.3148595027845 4.22327929706541 0.292108299495685 0.283152991478731 0.285384918890734 0.288967732374373 0.288171472708187 0.308175938365102 0.286622463796186 0.292236524746831 0.287073331738209 0.288893365329583 0.290139659660429 0.284828222611406 0.283518473950024 0.281741037060043 0.294371380518235 0.281741037060043 0.293162292520693 0.293799338900751 0.292587035990404 3 3|0 +|/ 22936803 22937320 22937034.5 22936788 22937354 + gene protein_coding_gene FALSE TRUE AT3G61900.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G46690.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE91172.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.387838870912399 2.09647786944330 0.0602353184502194 1 1.23405118045355 10.1362349019630 0.387838870912399 0.274290790361783
AT1G55900_at 6.34522305231438 6.60282865418438 6.3244828476251 6.63746572582446 5.89881542921093 5.97846167316382 6.72411234652237 6.64462219245883 4.07060906074631 5.28632645747841 4.58485495083989 5.12054407804746 4.34557072271919 4.66591791646645 5.57201004652476 4.41324023206356 4.80471881075469 4.91265100560586 5.10268055553552 0.215956576253118 0.217527144556329 0.219851847285569 0.230917464984909 0.221997936347846 0.232229992283718 0.220244287664624 0.227048447204621 0.229664965362440 0.233387825482064 0.236700863100676 0.218059196896179 0.218156216978686 0.221099065313552 0.219532040883108 0.220695131002496 0.220450282405584 0.226645394642973 0.215546347624640 1 1|0 +|/ 20907979 20909059 20908532.2 20906733 20909393 + gene protein_coding_gene FALSE TRUE AT1G55900.1 TIM50 (EMBRYO DEFECTIVE 1860) component of a translocase in the mitochondrial inner membrane Identical to Import inner membrane translocase subunit TIM50, mitochondrial precursor (TIM50) [Arabidopsis Thaliana] (GB:Q8VYE2;GB:Q56X01;GB:Q9LG22); similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to Os05g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056025.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59298.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.193411848311462 -2.09605872291441 0.0602788870978053 1 1.23343529465152 11.2056567376453 -0.193411848311462 0.072802584709198
AT1G49500_at 11.9550244136726 12.1807219609696 12.2445666534606 12.4139310464755 12.7418766087548 12.6248393871978 12.3058351516772 12.6703905826875 12.2464810854441 12.5737409039473 12.9859557994902 12.5470304304216 12.8092341777153 12.7130465772913 12.3845796570586 12.4604784112261 12.7575583046341 12.5631717087643 12.6257735240928 0.0814102447400561 0.078295082624001 0.0815541392636713 0.078295082624001 0.0808395840466312 0.0821254157182202 0.0810420117080743 0.0785487448696764 0.0905642280301752 0.0794188905946915 0.0827753801723144 0.0784185030324328 0.0798409485554099 0.081818943730051 0.0820952686988177 0.079879374692632 0.084084549328207 0.0819654410759792 0.0792342849156435 1 1 - 18325684 18325810 18325743 18325476 18325952 - gene protein_coding_gene FALSE TRUE AT1G49500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19030.1) 0.199471887775436 2.09603760223753 0.0602810832978869 1 1.23340426153629 24.9594634195219 0.199471887775436 0.0823096544819387
AT2G26410_at 1.89329754812833 2.03041859954975 1.98392328100687 2.22312472125141 1.93394408945548 1.60599964114872 1.96708586799202 1.78701424999698 2.12638719097170 2.19615260927717 1.64950838597842 1.70878478003516 1.83186034234778 1.35769384758653 1.59888068107221 1.66865374293947 1.96617516287516 2.38586804760850 2.23124276284769 0.215157094916961 0.211862671945091 0.212161954478505 0.212255638533572 0.218383248103010 0.216230379288291 0.224881640746247 0.220045126852334 0.221482791175948 0.215353884374677 0.214029749760811 0.211862671945091 0.211862671945091 0.219082394990251 0.215384805356587 0.213385024990621 0.213346845471411 0.213118406703685 0.211862671945091 2 2 - 11241811 11242290 11242096.727 11241729 11243829 - gene protein_coding_gene FALSE TRUE AT2G26410.1 IQD4 (IQ-domain 4); calmodulin binding similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQ calmodulin-binding motif, putative [Medicago truncatula] (GB:ABE77889.1); similar to Os01g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044716.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.198186098547302 -2.09559623006948 0.0603269959898813 1 1.23275576919203 3.90586215556832 -0.198186098547302 0.080427210495352
AT2G34780_at 3.53361246619750 3.85528492349395 3.25760971144889 3.28259073679795 3.6566742178012 2.97796017433847 3.65039598821471 3.29532101411527 3.25398309463966 2.77111600876961 2.67019780748659 2.45451176676723 3.14569340007272 2.80504438158199 2.69940115076078 3.09456861066455 2.65372249457775 3.08439623608512 3.07959925880004 0.235593317502344 0.227940014056364 0.221890847764356 0.222696451724052 0.221777720706796 0.232398283931448 0.23248099476567 0.220266926168107 0.232710154788726 0.225265503556567 0.224395365208775 0.223251200278258 0.227291350934838 0.220266926168107 0.225157667863105 0.220266926168107 0.226585817999725 0.228440656569795 0.230026131025527 2 2|0 +|/ 14679923 14680643 14680319.8 14675732 14680983 + gene protein_coding_gene FALSE TRUE AT2G34780.1 EMB1611/MEE22 (EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to hypothetical protein MtrDRAFT_AC147501g18v1 [Medicago truncatula] (GB:ABE90049.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.249451180489456 -2.09545111594321 0.0603420983602828 1 1.23254256917581 6.36910187158567 -0.249451180489456 0.14383624615188
AT1G10620_at 0.968545492899354 0.936049785897516 1.16122705826896 0.923508621676792 0.384070355092288 1.03894262500065 1.08329943965111 1.14392027492396 1.23308587105309 1.52921825012537 1.59877981683734 0.790475594734892 0.913945965872964 1.07672678862959 1.46352724629525 0.954460630580263 1.08793424893675 0.781868271810936 1.39478506112183 0.190071558284507 0.197183994065316 0.193225462857284 0.190425977914728 0.190071558284507 0.193117126543821 0.193258240447828 0.191641332367008 0.202254810579295 0.201392596837379 0.190608813673186 0.192765421669974 0.193677974170428 0.202625058773959 0.193688281581478 0.197263678695447 0.197626036652594 0.200408868499893 0.190071558284507 1 1|0 -|/ 3509011 3509851 3509336.778 3509002 3511976 - gene protein_coding_gene FALSE TRUE AT1G10620.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G23540.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70460.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70139.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.22912407848558 -2.09495727866727 0.0603935199481335 1 1.23181706982585 2.1895260639575 -0.22912407848558 0.121150452249132
AT1G33280_at 0.983325432895828 0.902056446470555 0.975545395598996 1.13694061176020 0.814668069996702 1.47583133155878 0.694893650181933 0.7777128028669 0.937040608638967 0.771628126707632 0.68616051463645 0.436400033445132 1.15382881148872 1.18506847060006 1.03107844242605 0.840130261333476 1.21622828912468 1.40335999865232 0.691155023984805 0.189398565430855 0.186232040639615 0.194249339386866 0.193480401813830 0.188252573813295 0.192879883052288 0.190263608729464 0.195586310277033 0.204461717425860 0.190619757373654 0.189930793790467 0.186232040639615 0.189083734924888 0.186682844056675 0.186232040639615 0.186232040639615 0.186605283342186 0.193756582423418 0.195399827398103 1 1 + 12073202 12073766 12073567.364 12072721 12073817 + gene protein_coding_gene FALSE TRUE AT1G33280.1 ANAC015 (Arabidopsis NAC domain containing protein 15); transcription factor similar to ANAC070 (Arabidopsis NAC domain containing protein 70), transcription factor [Arabidopsis thaliana] (TAIR:AT4G10350.1); similar to hypothetical protein [Zea mays] (GB:CAH56056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.227669934363880 2.09466649635075 0.0604238174850637 1 1.23138990921985 1.86710827057815 0.227669934363880 0.119476535637838
AT3G05210_at 7.51896538826653 6.89987167511121 7.0855794274078 7.01646669535404 7.54963535594348 6.66412076305775 7.4497309582253 6.89185490820755 6.41801710678088 6.04398619547308 5.98045315612385 5.41957353292602 5.83723501358601 5.77710994949597 5.51773667572759 6.27210691899868 6.27315634098312 5.74549517882408 6.66381863672373 0.236403759790448 0.223747540783722 0.230085316630110 0.223747540783722 0.229784347934968 0.259817390790835 0.231106744846584 0.224113236357034 0.235320270854244 0.227938741436325 0.233834425138571 0.226396234351591 0.225113580933454 0.230932758515898 0.230395937038908 0.223747540783722 0.230860897140836 0.223747540783722 0.230623173240468 3 3|0 +|/ 1480874 1481704 1481410.375 1479544 1482048 + gene protein_coding_gene FALSE TRUE AT3G05210.1 ERCC1 (UV REPAIR DEFICIENT 7) encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. Identical to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7) (ERCC1) [Arabidopsis Thaliana] (GB:Q9MA98); similar to DNA repair protein rad10, putative [Medicago truncatula] (GB:ABE77985.1); contains InterPro domain RuvA domain 2-like; (InterPro:IPR010994); contains InterPro domain DNA repair protein rad10; (InterPro:IPR004579); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445) -0.316785402918973 -2.09350497835307 0.0605449830816731 1 1.22968385183155 13.2485943091929 -0.316785402918973 0.210772863733401
AT1G49170_at 4.21499789318065 3.94639851865727 4.0520982850591 4.24526544994703 5.2418661153797 4.70841491756227 3.13871652848168 3.47040990987931 3.12801679694430 2.90127085840058 2.39335697869307 2.16371255661783 2.41683315253178 2.59366123353735 2.75338131032008 3.00977285034843 2.94084084029323 2.88094774283647 3.12824587389079 0.229965603832587 0.227598046769408 0.223675739751997 0.223675739751997 0.225355815724837 0.239812371473693 0.223675739751997 0.236582489110610 0.225602554514243 0.223675739751997 0.224303159501350 0.223675739751997 0.229464633683359 0.232885805375049 0.223704143846718 0.233978762267767 0.230091902961307 0.224161548972909 0.230508193919991 1 1 - 18187774 18188056 18187927.8 18186934 18188111 - gene protein_coding_gene FALSE TRUE AT1G49170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63440.3); similar to Protein of unknown function DUF167 [Medicago truncatula] (GB:ABE81179.1); contains InterPro domain Protein of unknown function DUF167; (InterPro:IPR003746) 0.230416318086346 2.09337574299519 0.0605584786579426 1 1.22949405032207 6.97555820704796 0.230416318086346 0.122862700288968
AT4G14480_at 5.01511806696345 5.49001146025594 4.40566699731465 4.43059658379049 5.6666010158512 5.34754625236596 4.52324886754714 4.8856897573155 4.82453342247657 4.39458985561285 4.69412187722081 5.16609020760223 3.81510736671751 3.7297824495688 4.15773221810555 4.25225724983096 3.83781561799806 3.88046561114706 4.66222153351925 0.268706650913603 0.268832913160904 0.260727961639202 0.267887965203292 0.264309298420229 0.283428520568259 0.260727961639202 0.269371494575932 0.271995741582133 0.260727961639202 0.260727961639202 0.262154408445181 0.264218321217635 0.260727961639202 0.266864837776206 0.260727961639202 0.276839241780832 0.265380395756461 0.262688011930508 4 4 - 8330098 8330652 8330436.1 8330077 8331540 - gene protein_coding_gene FALSE TRUE AT4G14480.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14720.1); similar to Os03g0678100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050891.1); similar to putative Ste-20 related kinase, 3'-partial [Oryza sativa] (GB:AAL54869.1); similar to Os06g0486400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057665.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.225678844059477 -2.09333406604605 0.0605628314355591 1 1.22943284239256 9.37995313116392 -0.225678844059477 0.117282627384046
AT2G34790_at 2.59992746780537 2.78799920373809 2.30876359234314 2.60664790614548 2.22250572387293 2.80487808506354 2.88388536549471 3.04763501767307 3.23843476994427 3.26349317937071 3.06044600646921 3.26063053534898 3.13353096759708 2.94026633001492 3.33727509059004 3.14485478575597 2.98818031409915 3.69253471486914 3.42332966056081 0.186960706771158 0.187648778471388 0.187842455554875 0.185599394076134 0.194656008917887 0.187420720523145 0.187917970608524 0.195365049527379 0.192715005274309 0.190860429671495 0.1844771991572 0.201233736364103 0.186391739043325 0.189248126853313 0.184931769516682 0.185022057717501 0.19004717117993 0.188042917651833 0.184765787169925 2 2 - 14681245 14681647 14681428.273 14680919 14684349 - gene protein_coding_gene FALSE TRUE AT2G34790.1 EDA28/MEE23 (embryo sac development arrest 28, maternal effect embryo arrest 23); electron carrier similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44390.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30760.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44400.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90048.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) -0.228933648510202 -2.09323638532844 0.0605730344549385 1 1.22928938752982 5.90934731845953 -0.228933648510202 0.121147851261160
AT1G17420_at 3.78745172315650 3.30468922628442 3.85385976095767 3.96676298823023 2.65804515789071 2.40733944267367 4.05079651474911 3.95401004997193 3.74709078957401 3.30528696919102 3.900405042957 4.53021596251009 2.51070102984392 3.53386193315655 3.74520707426763 4.31378180899214 2.64978106405423 4.35764000497242 3.62738190199082 0.199204499594297 0.203011151094398 0.204479226362976 0.196726786436296 0.204344071596769 0.200302798344396 0.199115189159145 0.200142819893602 0.20598994058524 0.200533574756721 0.196726786436296 0.197217656969856 0.205808621007458 0.208066222709461 0.202826468783316 0.202921862196927 0.198632022098361 0.201768700246309 0.197260621963697 1 1 + 5980805 5981321 5980978.545 5977404 5981473 + gene protein_coding_gene FALSE TRUE AT1G17420.1 LOX3 (Lipoxygenase 3); iron ion binding / lipoxygenase Lipoxygenase similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT3G45140.1); similar to lipoxygenase [Nicotiana attenuata] (GB:AAP83138.1); similar to lipoxygenase [Sesbania rostrata] (GB:CAC43237.1); similar to 13-lipoxygenase [Solanum tuberosum] (GB:CAA65269.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.209977843963395 -2.09274798750536 0.060624073315279 1 1.22857215875770 7.12417892149571 -0.209977843963395 0.0975923579524285
AT3G58630_at 3.12117845133198 2.90867011774322 3.34965916314224 3.22962623135342 3.49556987946332 3.74559893137449 3.31813626554349 2.96435103151379 3.04326159395494 2.78195083619121 3.02572873035531 2.63565667975146 3.53188928529862 2.85336371649561 2.72255974816875 2.98587422610147 2.84198189867219 2.79049679269844 2.86623967466686 0.189658317989325 0.187586671534466 0.187781664872221 0.19121599293234 0.191768180860828 0.202584904056171 0.195676616612377 0.202060314397747 0.193274935490857 0.198377267898490 0.190298775839596 0.192443970987515 0.194944413118238 0.186575234375251 0.188492351331909 0.190345089683504 0.186518353144714 0.190914548090727 0.186518353144714 3 3 - 21695868 21696357 21696193.455 21694545 21696918 - gene protein_coding_gene FALSE TRUE AT3G58630.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G11100.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.201661383944319 2.09247491274601 0.0606526280553371 1 1.22817116615434 6.17689605208178 0.201661383944319 0.0860494569897202
AT4G09970_at 3.78302008228246 3.41292828370753 3.58538536053275 3.27247229209749 3.18284130309726 2.89442947054249 3.37338298919590 3.17743247704481 2.87154489565150 3.44994339941448 2.75423757128528 2.93862303121732 2.92125333167703 2.97391819687544 3.44391365852358 3.07731879749297 2.82704344680932 3.06208686139602 3.35435488164788 0.232110784345972 0.219112330643982 0.220673697448277 0.226733376387544 0.213146275795192 0.219182248920585 0.214539094387166 0.219670965746422 0.212981584767800 0.214987989084751 0.215655419290947 0.212981584767800 0.218092611990416 0.222798863461439 0.216577911310384 0.212981584767800 0.215492068911706 0.217307771391749 0.218406448789697 4 4|0 +|/ 6246273 6247499 6247113.625 6245958 6247765 + gene protein_coding_gene FALSE TRUE AT4G09970.1|AT4G09970.2 unknown protein -0.214195274242587 -2.09128680757969 0.0607770131954785 1 1.22642673581973 6.44777674271971 -0.214195274242587 0.103321100615091
AT2G43780_at 6.01707911201336 6.14378519426025 5.89450978082214 6.12902464939523 5.98512343063148 5.51661987438511 5.76540409897123 5.94499825868173 4.97544120314613 5.04489345701816 5.76811193122462 5.5420250154333 5.58473186035321 5.54173296931597 5.61865987911801 5.82251823997169 5.3891302557751 5.3371334000837 5.18497045944981 0.20892084880998 0.222111600056936 0.224301821423254 0.206194634207252 0.209102522137923 0.218656756271841 0.204022415462822 0.209473446328837 0.216268341222576 0.213003308083 0.206913989457206 0.212619138881082 0.206050426341776 0.211067762230342 0.205860174108744 0.204356144823744 0.212994721939524 0.213840947568672 0.205516681086705 2 2 - 18143523 18143680 18143596.273 18143521 18143724 - gene protein_coding_gene FALSE TRUE AT2G43780.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99375.1); similar to Os12g0611700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067254.1) 0.210286585932468 2.09037614884942 0.0608725149986654 1 1.22508991322747 11.2465382917855 0.210286585932468 0.0983220545486319
AT4G20080_at 0.0123614947763011 0.067566513354991 0.111157622244013 -0.0354099047952743 0.303633171609012 0.406594194503403 0.354105580796309 0.193187049823880 0.83602609170896 0.62632194532247 0.547771891803646 0.163821131480581 -0.000444019169530258 0.450018091935633 0.498973135861427 0.337845018455712 0.091842341711209 0.584978931057554 0.726574609407475 0.189714640807075 0.189714640807075 0.199041170219658 0.191492235496923 0.190641587487377 0.191969524799686 0.189714640807075 0.191069786258911 0.200783216333862 0.19535471618856 0.197915699776497 0.192686740157159 0.191039586657090 0.200001629468544 0.198430441574855 0.197521086406814 0.189836001907305 0.192913729087030 0.195195636625609 4 4 + 10867092 10867558 10867275.636 10865305 10867629 + gene protein_coding_gene FALSE TRUE AT4G20080.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51570.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12970.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57880.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.177800727775927 -2.08990389950054 0.0609220961150559 1 1.22439674876742 0.708645314058245 -0.177800727775927 0.0427502396710326
AT3G20450_at 3.19947030140653 3.31522777670821 3.25797205288437 2.91120764276120 2.81623949065266 3.15636294865727 3.4145449018566 3.55780666555531 4.49513588941424 4.16063621371250 4.1098317160781 4.64770939399176 3.48305022701104 3.91990335284828 4.27483525843801 4.2998246180671 3.83282224003272 4.22928905293721 3.85869474646868 0.216734948612358 0.210291694721687 0.225036035239865 0.206881350615583 0.213354495519949 0.206881350615583 0.215167712799615 0.211395840360268 0.209011568261099 0.209527528063353 0.209411300416595 0.209475481775465 0.21679632524372 0.210139512762490 0.215172591359026 0.209270842481683 0.218699271476989 0.215155498385588 0.211375477105663 3 3|0 -|/ 7130816 7131207 7131041.1 7130665 7131280 - gene protein_coding_gene FALSE TRUE AT3G20450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11905.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69146.1); similar to Os06g0367500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057612.1); similar to Os05g0272900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055067.1); contains domain BCR-ASSOCIATED PROTEIN, BAP (PTHR12701:SF1); contains domain BCR-ASSOCIATED PROTEIN, BAP (PTHR12701) -0.204073797541196 -2.08969383174416 0.0609441632315561 1 1.22408843136091 7.3391775637056 -0.204073797541196 0.089897400454466
AT1G15490_at 3.65593727364869 3.35479720302891 2.92889670336169 3.16612614995523 3.80428120811288 3.61345959366255 3.64093104516454 3.80837693499093 3.72826416945145 4.52941125619867 4.53782938148058 4.57060291826896 3.93895222232244 3.74804225331514 4.42659915899497 3.86140979032649 3.27453455690357 3.29036987348664 4.08219364828698 0.241355753964825 0.233063009646258 0.237030295062764 0.233796169215140 0.232490436309902 0.245837308488423 0.236031094415189 0.235740605711283 0.248079910088532 0.232875211168376 0.228443508762764 0.230110305249237 0.228320887584459 0.235774201972339 0.228320887584459 0.228320887584459 0.247561733067116 0.240441635762269 0.230795929569817 1 1|0 -|/ 5320859 5321670 5321210.9 5320610 5323890 - gene protein_coding_gene FALSE TRUE AT1G15490.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G80280.1); similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G52750.1); similar to Alpha/beta hydrolase fold [Pelodictyon phaeoclathratiforme BU-1] (GB:ZP_00590443.1); similar to Os01g0647700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043711.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -0.197033436180099 -2.08930398644059 0.0609851355571384 1 1.22351628407704 7.53126686934054 -0.197033436180099 0.0795701819541821
AT4G37740_at 2.3054881735448 2.72700468745693 1.70199102544354 1.54130669703652 2.19725066494297 2.15663076593181 2.39582751453116 2.11992232410156 2.67216457110304 2.52653467173928 2.75904412058819 3.25788475974038 2.27258956046358 2.89383081497849 2.70338898485257 2.22550987064736 2.09781154675929 2.44441764405067 2.31563577003843 0.189010890732870 0.186228247198825 0.183354200924754 0.194429641767004 0.185311787444141 0.187176051616602 0.180890470000295 0.186523658206175 0.188785611460449 0.190973332031554 0.195017018989632 0.180892083717475 0.187246554613278 0.186929535719334 0.183349773354513 0.186986307287809 0.182454577566252 0.182069854116822 0.188049012898728 4 4 - 17725529 17726027 17725752.091 17725331 17727724 - gene protein_coding_gene FALSE TRUE AT4G37740.1 AtGRF2 (GROWTHREGULATING FACTOR 2) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower similar to AtGRF1 (GROWTH-REGULATING FACTOR 1) [Arabidopsis thaliana] (TAIR:AT2G22840.1); similar to putative transcription activator [Oryza sativa (japonica cultivar-group)] (GB:AAO38468.1) -0.205367280718375 -2.08921787581779 0.060994189198952 1 1.22338991118641 4.68647173181715 -0.205367280718375 0.091779239561684
AT2G19970_at 0.855035855573884 1.11727047600749 0.930900200403622 0.878053231969871 0.60971277789524 0.747397227007153 1.10780617828570 0.595196370629976 1.18257973148326 0.981270530668397 1.04854228269806 0.782898981701032 0.933801280189995 0.842702891210792 0.596468634626474 0.504258791809161 1.05099808653501 0.962503096991025 1.25678331461412 0.185752927551537 0.189484533225936 0.186971634351956 0.188787999997212 0.186760169003022 0.187853325932628 0.189350112375500 0.184539043477304 0.199047907380955 0.189665209753299 0.18472934877773 0.186118527485094 0.189832086856913 0.191608923527110 0.194071366096918 0.184885154264090 0.202425555845786 0.193024977355175 0.196247856475691 2 2 - 8631076 8631503 8631285.909 8630811 8631557 - gene protein_coding_gene FALSE TRUE AT2G19970.1 pathogenesis-related protein, putative similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT2G19980.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.213625398670178 -2.08920624880466 0.0609954117564557 1 1.22337284794308 1.84541301370934 -0.213625398670178 0.102859945202290
AT2G39030_at 3.56029328982402 3.97087114252568 2.91131672893212 3.30151711857382 2.21550250088118 2.94202679286557 2.17919635734396 2.8990689139307 3.04732175847623 3.57021973217436 2.80052637774465 2.78010487872389 3.01627341246447 2.80245032982371 2.84129359242244 2.72673076432878 2.9098219178186 2.66574274349255 2.74939365069175 0.251423498575158 0.248141032093105 0.251368037256148 0.245979190321878 0.243921533348148 0.244535723228156 0.251070827081901 0.251484666548107 0.257908000338391 0.247298743665518 0.245830493136318 0.241423384344291 0.243452187655366 0.249390351647614 0.248198966262706 0.241423384344291 0.24595888775594 0.245904721963842 0.242276194589785 2 2 + 16305438 16305980 16305706.273 16305305 16306280 + gene protein_coding_gene FALSE TRUE AT2G39030.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G39020.1); similar to GCN5-related N-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94015.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.307105176135653 -2.08889493237833 0.0610281546717873 1 1.22291598808091 5.96756396355121 -0.307105176135653 0.202324850053112
AT3G56890_at 1.43418017797925 1.26075065238238 1.89403177252148 1.88193452015484 1.26504878937249 1.57623727048938 1.91149251821110 2.05005688016956 2.20432098136977 2.47136673798208 1.681962031486 1.56533560770312 1.78254500287294 2.04150275371772 1.72360420425955 1.79500491715154 1.46605703586093 1.64280438134452 1.56516807914531 0.170114159699942 0.170525084571867 0.168397328580245 0.168728031829475 0.165858483725097 0.170140527518679 0.166699116172798 0.177962878761401 0.175390676503794 0.177398004952227 0.166871807417131 0.169257588554662 0.164589295537037 0.166675871029066 0.173409204721845 0.167222018571445 0.174480197108978 0.174607455762742 0.175733208656703 3 3|0 -|/ 21073990 21074606 21074223.4 21073969 21074696 - gene protein_coding_gene FALSE TRUE AT3G56890.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G57580.1); contains InterPro domain F-box associated type 3; (InterPro:IPR013187) -0.188870121708604 -2.08874009489103 0.0610444459895965 1 1.22268877198032 3.55553520164269 -0.188870121708604 0.0661835105827961
AT4G37000_at 10.0499550028302 10.0967874803299 10.2362267971749 10.2347579627296 10.4635838568609 10.2609465604282 10.77485383788 10.779604617178 10.0399935855958 10.3895895169198 10.676567039251 10.5214464408777 10.8802586708927 10.7774263714018 10.4910525220443 10.8276603326666 10.7544171362853 10.7651251100161 10.2746751112715 0.0813056012369006 0.0789896927323656 0.0853163828331084 0.0824449939722459 0.0804725831782015 0.0847500151238707 0.0791048027777894 0.0788201971033961 0.0906698756879672 0.079626593749803 0.0796365284503022 0.0793600524408805 0.0793705744963087 0.0809801071330054 0.0791468286062698 0.0787103850884439 0.0885457512530983 0.0820720675027618 0.0793682342083209 4 4 + 17443263 17443695 17443407.636 17442606 17443849 + gene protein_coding_gene FALSE TRUE AT4G37000.1 ACD2 (ACCELERATED CELL DEATH 2) Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its product was shown to display red chlorophyll catabolite reductase (RCCR), which catalyzes one step in the breakdown of the porphyrin component of chlorophyll. The enzyme was further assessed to be a Type-1 (pFCC-1-producing) RCCR.Upon P. syringae infection, ACD2 localization shifts from being largely in chloroplasts to partitioning to chloroplasts, mitochondria, and to a small extent, cytosol. Overexpression of ACD2 delayed cell death and the replication of P. syringae. Identical to Red chlorophyll catabolite reductase, chloroplast precursor (EC 1.-.-.-) (RCC reductase) (AtRCCR) (Accelerated cell death protein 2) (RCCR) [Arabidopsis Thaliana] (GB:Q8LDU4;GB:O23185); similar to red chlorophyll catabolite reductase [Brassica napus] (GB:CAJ80767.1); contains InterPro domain Red chlorophyll catabolite reductase; (InterPro:IPR009439) 0.175285012372125 2.08871526598149 0.0610470587600732 1 1.22265233740585 20.8353379848557 0.175285012372125 0.0360019764242766
AT3G27785_at 2.04484977313577 1.68380247349375 2.06454424165441 1.77598886702761 1.59302292895663 1.50033856096465 1.61918099154251 1.68927283777364 2.21188091528208 2.18886504441736 1.81505043094625 1.76242898865041 1.73571758177489 1.83489031017283 1.95618442932478 1.92789997742962 1.72444605327375 1.98414980063342 2.2425615571632 0.143278871283640 0.143639991886002 0.141013184864598 0.142982354160801 0.141616043193354 0.145859084438698 0.13970803388325 0.140423300276903 0.1447495804383 0.139866951390088 0.145825426599981 0.13959646975285 0.142324561068888 0.145777161519174 0.142695044276029 0.141693787022884 0.142424213979499 0.141420426927628 0.145606612939013 3 3|0 -|/ 10290004 10291430 10290664 10289840 10292171 - gene protein_coding_gene FALSE TRUE AT3G27785.1 MYB118 (myb domain protein 118); DNA binding / transcription factor putative transcription factor (MYB118) similar to MYB115 (myb domain protein 115), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G40360.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67643.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.198821380882029 -2.08805951598083 0.0611161022145054 1 1.22169013135313 3.7748909770586 -0.198821380882029 0.0824733239937845
AT1G53540_at 1.69122980754793 1.77880187585003 1.86381500819958 1.74395105265516 1.74871178871541 2.17911616755147 1.59005206682585 1.74120448907120 1.87528514393109 1.86763948828981 1.91217623260235 1.79720342575392 2.01565263508913 1.71357570550590 1.80576335215294 1.75840449404791 1.91455083149003 2.32781117206570 1.33014578622665 0.190813103807367 0.190495058848779 0.186584720951317 0.193105402944828 0.194849404517266 0.204003657989267 0.189506661110487 0.188769017757199 0.197019104397462 0.198551048354189 0.189797873787202 0.187770522768872 0.19807851889499 0.198840770216010 0.195130438212588 0.195450578201489 0.192595610892042 0.214955531675739 0.186938620850652 1 1 + 19984179 19984590 19984388 19984130 19984775 + gene protein_coding_gene FALSE TRUE AT1G53540.1 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) Identical to 17.6 kDa class I heat shock protein (HSP 17.6) (HSP17.6) [Arabidopsis Thaliana] (GB:P13853;GB:Q9C8L3); similar to ATHSP17.4 (Arabidopsis thaliana heat shock protein 17.4) [Arabidopsis thaliana] (TAIR:AT3G46230.1); similar to low molecular weight heat-shock protein [Brassica rapa] (GB:AAB72109.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.199097601364645 2.08715148696083 0.0612118297064907 1 1.22035793237229 3.59044313400425 0.199097601364645 0.0830177726196508
AT2G30350_at 5.64104173891823 6.11396809839062 5.1460665744856 5.85724689360048 6.01163942647531 6.28966403872584 5.34402008919875 5.55813994574378 4.35021690018857 4.12635386297308 4.41289635586049 4.97884765580305 4.74682652377425 4.75269080809534 4.56712892032296 4.81285842584922 5.09461127636999 4.45738034053474 4.61165932816448 0.236342756577044 0.226023816181883 0.228381087714124 0.229749105096586 0.225475518163931 0.232626559877465 0.224901522321198 0.226929680679673 0.236124390220555 0.228143066553259 0.232542720256049 0.233200903345758 0.226891475757622 0.244633101636867 0.224901522321198 0.230882183433764 0.247388552005831 0.224901522321198 0.224901522321198 2 2 - 12941325 12941886 12941630.364 12941227 12942850 - gene protein_coding_gene FALSE TRUE AT2G30350.1|AT2G30350.2 endo/excinuclease amino terminal domain-containing protein similar to Os07g0230500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059231.1); contains domain SUBFAMILY NOT NAMED (PTHR20208:SF5); contains domain FAMILY NOT NAMED (PTHR20208)|similar to PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform 1 [Canis familiaris] (GB:XP_849594.1); similar to Os07g0230500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059231.1); contains InterPro domain Excinuclease ABC, C subunit, N-terminal; (InterPro:IPR000305) 0.263511719904920 2.08635713820051 0.0612956887253619 1 1.21919269412087 10.2905475517431 0.263511719904920 0.159790638873435
AT1G67330_at 5.94861630291946 6.81459717386441 5.43576541699994 6.08330444308352 5.87790161029123 6.511233013625 5.9983863181386 6.96917372047685 5.09640439308677 5.27296479207006 4.22939922545147 5.58165285673201 5.93215868720892 5.61662958370425 4.38992394618919 4.52943558288282 4.92544534368468 4.75506396654109 5.56351255960959 0.222550451579648 0.225293905011514 0.221413587178726 0.226712468957468 0.218538163478096 0.221591119689866 0.219411313488797 0.221450465110447 0.227463145113988 0.227302245998718 0.225962277343209 0.220694845166408 0.223054719925680 0.240297461966239 0.242396004529452 0.221550754783068 0.222421313630130 0.227699251402232 0.226456704522973 1 1 + 25218074 25218607 25218440.818 25217515 25218837 + gene protein_coding_gene FALSE TRUE AT1G67330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27930.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) -0.385819595194705 -2.08537574184941 0.061399444059648 1 1.21775330190084 11.3578343652439 -0.385819595194705 0.274321202112431
AT4G36420_at 4.07336012218795 3.96167323413342 3.78600829289588 3.55201260149255 4.28677078943254 3.82555492708452 3.67726266567302 3.39742266098623 2.92014488203500 2.60798663831013 3.0093709163753 3.20941159888552 3.24800590132601 2.63347017641197 3.1516339212438 3.06740193874549 3.31260390946066 2.76211473848756 2.5926095258561 0.223021146292152 0.227781438176745 0.215441282581804 0.219236911722302 0.212764076692258 0.22342189501242 0.214199665297108 0.214603046697108 0.221262812722032 0.21536379853102 0.217479675683500 0.212381139289286 0.218052662580008 0.218204906448135 0.215764283493945 0.212381139289286 0.21650541978138 0.213050000315013 0.221634739557583 4 4 - 17203962 17204233 17204119.545 17203034 17204315 - gene protein_coding_gene FALSE TRUE AT4G36420.1 ribosomal protein L12 family protein similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT1G70190.1); similar to Ribosomal protein L7/12, oligomerisation [Medicago truncatula] (GB:ABE84067.1); contains InterPro domain Ribosomal protein L7/12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) 0.213747468765587 2.08494863338005 0.0614446506480211 1 1.21712695020535 6.69809082157782 0.213747468765587 0.103581340211026
AT4G18465_at 4.38424906975404 4.72442195145669 4.65531957494809 4.35202317200591 4.74649249562395 4.34629879382396 4.42607476439171 4.26696740336978 4.39721209565226 3.84815626522078 3.42531732330042 3.93038053714328 3.22392925579733 3.62359475906592 2.99733423496812 3.672127139254 3.54153053540883 3.76404851918224 3.85101295137784 0.226739644089932 0.240059934815086 0.236177996404701 0.236534671116401 0.23357937647016 0.233708823896832 0.233103280091876 0.242811846977874 0.240933595504368 0.231398745159765 0.236294139359117 0.227020929049603 0.239839524708419 0.234966421160231 0.232756016829401 0.226739644089932 0.252035074178969 0.230909300675230 0.254032442461209 4 0|4 /|+ 10200799 10201595 10201414.714 10197067 10201622 + gene protein_coding_gene FALSE TRUE AT4G18465.1 RNA helicase, putative similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to PREDICTED: DEAH (Asp-Glu-Ala-His) box polypeptide 35 isoform 4 [Pan troglodytes] (GB:XP_514647.2); similar to PREDICTED: similar to Probable ATP-dependent helicase DHX35 (DEAH-box protein 35) [Canis familiaris] (GB:XP_542996.2); similar to DEAH (Asp-Glu-Ala-His) box polypeptide 35 [Homo sapiens] (GB:NP_068750.2); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.217619552105594 -2.08493159428926 0.0614464547739571 1 1.21710196348546 8.26493584922109 -0.217619552105594 0.108511822043583
AT3G23610_at 5.06492156428838 5.55049441452101 5.49396146497946 5.37110187570906 6.17050535808444 5.77320852139905 5.55028993785143 5.3128654489233 4.25314026414663 5.08700528261694 4.97733417827434 4.86079683255798 5.02298949933777 4.85566376320181 4.38197036830232 5.18403284283383 4.65115678475512 5.12588646179935 4.9526461837462 0.232413499172203 0.229371596659490 0.231845990037174 0.234535474397952 0.226205523756251 0.230317398692436 0.231278943403639 0.241849046711411 0.258652419583443 0.228374749823329 0.227639640911729 0.234770818816986 0.228291819910901 0.227324706120648 0.234185993238662 0.227433228313695 0.241613501517729 0.244359951469462 0.228336395054228 3 3 + 8478532 8479503 8479052.636 8478129 8479864 + gene protein_coding_gene FALSE TRUE AT3G23610.1 dual specificity protein phosphatase (DsPTP1) similar to dual specificity protein phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G06110.2); similar to dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum] (GB:BAE44441.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.225383197429934 2.08488626880269 0.0614512541517412 1 1.21703549697412 10.3592899489959 0.225383197429934 0.118019047647530
AT3G10530_at 3.84770612600054 3.74104331326703 3.87364761675575 3.39595234974039 2.89225119342344 2.79966383307898 3.99947156186724 3.52223806119704 2.09545164670338 2.30043983157357 2.34799166148801 2.31938814921395 2.70093778145430 2.22073228140174 2.66358621297922 2.33157465888925 2.82134484828914 2.02672347193699 2.63813250539772 0.210694533629143 0.208960508129852 0.211359004474145 0.213976496417411 0.208658515199499 0.213261660487571 0.217278886170229 0.209119012277341 0.209229330668476 0.212493199070847 0.209340893814757 0.21060188813887 0.207791228070782 0.207928596805771 0.209560654892676 0.208738762532922 0.222373867764380 0.216132574061105 0.213724551076428 3 3 + 3288113 3288628 3288365.273 3285897 3288885 + gene protein_coding_gene FALSE TRUE AT3G10530.1 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G33340.3); similar to WD40-repeat-containing subunit of the 18S rRNA processing complex (ISS) [Ostreococcus tauri] (GB:CAL50451.1); similar to Os01g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042224.1); contains InterPro domain BING4, C-terminal; (InterPro:IPR012952); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.226437897675820 -2.08406446858831 0.0615383334701464 1 1.21583048053772 5.89585152913203 -0.226437897675820 0.119381877069314
AT4G21440_at 1.41454424528602 2.48701106788601 1.70120568628888 2.36684106266032 2.54194499673403 2.24223995622378 1.34261084949867 1.97838375547825 1.48646607007928 2.17668349348490 2.05054399031652 2.51200978375549 2.23735840375465 2.14951330730990 2.79890125491645 2.05224757870087 2.33848957187423 2.54466522453608 2.4188534474555 0.230681486075326 0.213019923841139 0.217821474445912 0.217289373133077 0.223395556959268 0.223743968243972 0.221484067466613 0.218245112962559 0.236305788044060 0.228788514877628 0.215996794914792 0.214895981695756 0.214162919073457 0.214523868882487 0.214106529426143 0.213019923841139 0.226565239724463 0.232074519887542 0.217614052265636 4 4 - 11418453 11418988 11418699.909 11418257 11419771 - gene protein_coding_gene FALSE TRUE AT4G21440.1 ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor Encodes a MYB transcription factor involved in wounding and osmotic stress response. Member of the R2R3 factor gene family. similar to AtMYB74 (myb domain protein 74), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G05100.1); similar to putative MYB transcription factor [Populus x canescens] (GB:AAN05422.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.357776124164238 2.08145625851214 0.061815475793648 1 1.21200720346233 4.19074794070804 0.357776124164238 0.250019723962076
AT3G60110_at 2.66575532569092 2.42934919754696 3.01207957244615 3.0332902048505 2.60924066030912 2.78745203672819 2.46995507422019 2.48747220772102 2.61318167202509 2.74235915455997 2.64390528660221 2.38238936212638 2.6399605212623 2.35622042930791 2.62727571938187 2.63663071387007 2.70601721956294 2.61687399740560 2.33082042932069 0.171056482451081 0.174123324841163 0.168504622784785 0.177606083993388 0.168071451815331 0.186518692070913 0.170275174787923 0.166900988129673 0.173774096943951 0.171187797463080 0.170225159590736 0.165462278989506 0.165594885260453 0.168888302031502 0.166387148236107 0.167293548359092 0.173550881920585 0.178067737029918 0.169904613880425 3 3 + 22211582 22212094 22211847.727 22208802 22212426 + gene protein_coding_gene FALSE TRUE AT3G60110.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT2G44430.1); similar to Os08g0510700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062208.1); similar to chromosome scaffold protein p85 [Moneuplotes crassus] (GB:AAN75020.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.180710702421689 2.08121565262649 0.0618411012697314 1 1.21165459857697 5.25596407235171 0.180710702421689 0.0514539835254864
AT3G61950_at 0.574305031552719 0.942984841204192 0.645338670764069 0.65241452321162 0.558854381531258 0.626285508776448 1.36973481964054 1.26231686943938 1.51734868820683 1.70965519193402 1.56599636608916 2.36566107325204 1.05972664974991 1.88401882369385 2.18569105387870 1.44609711079342 1.70955165783244 1.36980959268195 1.75151047685831 0.202470772193122 0.210058066651196 0.21140110358107 0.207049981113391 0.206630214587174 0.211973422763638 0.204037369673483 0.203743168525264 0.212679292338391 0.208198421133561 0.207721964157803 0.218817022509160 0.206676072776715 0.206726206450482 0.211677521897494 0.203935407216959 0.219130092059618 0.202470772193122 0.212876017625670 3 3|0 +|/ 22951624 22952256 22951965.5 22950521 22952426 + gene protein_coding_gene FALSE TRUE AT3G61950.1|AT3G61950.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46810.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABD32380.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.188898932029155 -2.08095178931469 0.0618692152776558 1 1.21126792777789 2.50794124409644 -0.188898932029155 0.0674825419324254
AT1G52600_at 9.68845527429483 9.7674159830993 10.0553508340123 10.1601763631708 9.86891026096438 9.29928788717968 9.5708379703253 9.40169057552818 8.70953837105636 8.6168795185686 8.6069844857509 8.97712884329116 8.71902021668416 8.72415433823024 8.73626154382688 8.70588193601924 8.84192678844064 8.88110751784954 8.424629014057 0.133994864672747 0.135259849220193 0.132326495223835 0.132993546994665 0.135496859645725 0.134556465752447 0.136029799190937 0.135718239464558 0.159174503009300 0.135182727796269 0.148197064582317 0.132595977615779 0.135397929047316 0.130116744795609 0.140161587675860 0.134107408726719 0.143138238229774 0.134610767427284 0.141104177774963 1 1|0 +|/ 19594320 19596114 19595314.625 19594194 19596364 + gene protein_coding_gene FALSE TRUE AT1G52600.1 signal peptidase, putative similar to signal peptidase, putative [Arabidopsis thaliana] (TAIR:AT3G15710.1); similar to Peptidase S24, S26A and S26B [Medicago truncatula] (GB:ABD28715.1); contains InterPro domain Peptidase S26B, eukaryotic signal peptidase; (InterPro:IPR001733); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) 0.214603646527080 2.08021807858528 0.0619474538144614 1 1.21019282933887 18.4053858985663 0.214603646527080 0.105308231395708
AT1G70170_at 1.13813536090271 1.66237787012684 1.82113501234192 1.92795845682998 1.56609331417458 1.61857766460171 1.05146523484973 1.27775340635109 1.45603853861281 1.03459090929445 1.23044518647013 1.17285299473319 0.989602625548017 1.14020367721492 1.22231052257315 1.18657411432530 1.40083344374499 1.37005739557971 1.23755497168825 0.188610832652376 0.188747555045877 0.200792375671375 0.185606513562996 0.195393946249468 0.189650427499096 0.198613446443881 0.18407956054748 0.195702288189891 0.200988381611104 0.187973695709326 0.189301639722187 0.190576211390996 0.197586414692881 0.1899640372111 0.18407956054748 0.196292884105682 0.193922831091788 0.195162691311846 1 1 + 26428257 26428778 26428467 26427537 26429019 + gene protein_coding_gene FALSE TRUE AT1G70170.1 MMP (MATRIX METALLOPROTEINASE); metalloendopeptidase mutant has Late flowering; Early senescence; Matrix Metalloproteinase similar to matrixin family protein [Arabidopsis thaliana] (TAIR:AT1G24140.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Peptidase, metallopeptidases [Medicago truncatula] (GB:ABE90189.1); contains InterPro domain Peptidase M10A and M12B, matrixin and adamalysin; (InterPro:IPR001818); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidase, metallopeptidases; (InterPro:IPR006026); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) 0.211194999543981 2.07981298504926 0.0619906905627173 1 1.20959931104234 2.73635610746674 0.211194999543981 0.100937372345993
AT4G13800_at 4.8722908043738 4.6982242341433 7.42578596655885 7.49054962564307 7.82638760495436 5.95764246917041 9.13136848465422 8.44570441944352 5.45305091578377 6.75089492604901 5.89491037111885 5.40495832561105 7.18035501765786 7.49066179210458 5.09031931192546 7.62801306063148 7.90810223040523 6.87943592793229 6.20840175867618 0.222644322855769 0.219393677147998 0.223257527704342 0.217484948392606 0.210811901989733 0.232256147062422 0.217969650610644 0.210811901989733 0.222442416654222 0.214259484080807 0.213686471655121 0.215491429904101 0.210811901989733 0.222375890638038 0.215738838173622 0.212036888345361 0.214144825520728 0.218090921201808 0.213645543500615 4 4|0 -|/ 8002135 8003029 8002514.5 8001858 8004135 - gene protein_coding_gene FALSE TRUE AT4G13800.1 permease-related similar to permease-related [Arabidopsis thaliana] (TAIR:AT3G23870.1); similar to OSJNBa0069D17.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD40575.1); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); similar to Protein of unknown function DUF803 [Medicago truncatula] (GB:ABE89975.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.467669867715832 2.07970868056177 0.0620018278762483 1 1.20944649749950 13.3920160535392 0.467669867715832 0.345972461705705
AT3G13440_at 4.20238550971708 5.10478985867373 4.219859709829 4.62465381758624 5.03986651831635 5.21173595736378 4.01589384966016 5.09945208183448 5.21035374016192 5.18581033855547 4.91996777893326 4.48531464867662 4.83186700662915 4.12349707016251 4.21451497669532 5.08950240408848 4.04167693466634 4.26278395231115 5.77953765725763 0.233388811094382 0.229820743266579 0.244728716863081 0.229797134423791 0.240733506537282 0.236797908679279 0.23610064547233 0.229797134423791 0.245151858022673 0.234353257488661 0.232018817948616 0.232322110933149 0.240089279505497 0.233459133713384 0.233288092699750 0.234540002169023 0.243352673781545 0.230342350416702 0.23276888054949 3 3 + 4378786 4379315 4379007.818 4377104 4379582 + gene protein_coding_gene FALSE TRUE AT3G13440.1 similar to Methyltransferase small domain, putative [Medicago truncatula] (GB:ABD33115.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) -0.363680653167755 -2.07949547426481 0.0620245992648211 1 1.20913414395379 9.63385025046195 -0.363680653167755 0.255619337705951
AT2G32450_at 4.19459625014272 4.778521571213 3.81530249101643 4.28075056416361 5.247499983523 4.36710637181275 5.2404928292916 5.22578095713209 5.7377266054536 5.25553671870349 6.01032461644515 5.58127136971744 5.71285056831875 5.79590144526867 5.32062607821677 5.47570968072505 4.83439727907872 4.78576730366338 5.84740855625807 0.212872240352849 0.211449107650781 0.215363460249770 0.211957929763169 0.208230124268784 0.215759993871564 0.216994274802757 0.207248209975594 0.219588827488391 0.212813139572632 0.217077806822061 0.210021193738302 0.206449229912659 0.236849393048724 0.208965259539896 0.205654560852516 0.217173806615032 0.207860307894235 0.212326017422719 2 2 + 13787567 13787963 13787784.909 13785526 13788335 + gene protein_coding_gene FALSE TRUE AT2G32450.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G05150.1); similar to Os03g0263900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049638.1); similar to O-GlcNAc-transferase-like protein [Castanea sativa] (GB:AAL15891.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_4; (InterPro:IPR011717); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.303067150054194 -2.07949446191342 0.0620247074073091 1 1.20913266085764 10.1703380453624 -0.303067150054194 0.199795340997803
AT1G43900_at 8.07813174489175 8.41933332917003 8.26674110861272 8.26098513896814 8.00204418117388 8.10133277586836 8.12140916731947 8.36136924030754 8.36970549632456 8.03303587920475 8.15799725501246 7.98694879837537 7.98305798930383 8.03613965083185 8.15830269217614 7.93262016725942 7.6233671114017 8.0619605007141 8.46898147481487 0.152623548986001 0.152869060672617 0.151488059109673 0.154667994517894 0.149914778114771 0.155522350627739 0.154876478948229 0.15683899106783 0.169216907563786 0.148763111019538 0.146963975649665 0.146910674939181 0.152708145241925 0.156694480687001 0.162334825741476 0.146910674939181 0.175793361504508 0.155247062865079 0.155417624406632 1 1|0 +|/ 16657362 16658216 16657806.75 16656470 16658368 + gene protein_coding_gene FALSE TRUE AT1G43900.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31750.1); similar to protein phosphatase 2C [Mesembryanthemum crystallinum] (GB:BAB88944.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.192655041040063 -2.07859258392222 0.0621211194864229 1 1.20781151608368 16.3429801128302 -0.192655041040063 0.0742101325804618
AT1G44170_at 8.02552326862177 8.19478510422085 7.51496159704794 7.77774120335431 7.9604527751981 6.99604192702412 8.77726184562036 8.74275299663576 8.25248894625458 8.14962235247192 8.69831894922138 8.49498314199887 7.98308708790071 8.72947407929576 8.39853284621262 8.44545272010118 7.6343667186407 8.57518780737992 7.75745201955428 0.17667707756846 0.171362681283652 0.194478058493675 0.173663487327882 0.175473666016822 0.197128695960415 0.170028393600708 0.175394923388052 0.173300132695775 0.179307061913805 0.175524235836218 0.173543502017845 0.181606998330678 0.182218068349009 0.180018250968878 0.174337827394519 0.186327333516025 0.179927476198415 0.178961580503065 1 1|0 -|/ 16799005 16799779 16799383.667 16798840 16802761 - gene protein_coding_gene FALSE TRUE AT1G44170.1|AT1G44170.2|AT1G44170.3 ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)|ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase|ALDH3H1 (ALDEHYDE DEHYDROGENASE 4) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. Identical to Aldehyde dehydrogenase 3H1 (EC 1.2.1.3) (AtALDH4) (ALDH3H1) [Arabidopsis Thaliana] (GB:Q70DU8;GB:Q8LFT7;GB:Q9C6Y7); similar to ALDH3I1 (Aldehyde dehydrogenase 3I1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT4G34240.1); similar to Aldehyde dehydrogenase (Cp-ALDH) (GB:Q8VXQ2); contains InterPro domain Aldehyde dehydrogenase NAD(P)-dependent; (InterPro:IPR012394); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086)|Identical to Aldehyde dehydrogenase 3H1 (EC 1.2.1.3) (AtALDH4) (ALDH3H1) [Arabidopsis Thaliana] (GB:Q70DU8;GB:Q8LFT7;GB:Q9C6Y7); similar to ALDH3I1 (Aldehyde dehydrogenase 3I1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT4G34240.1); similar to Os11g0186200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065921.1); similar to aldehyde dehydrogenase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96616.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.278021891017469 -2.07836512822339 0.062145457148555 1 1.20747835432882 16.2102466855175 -0.278021891017469 0.175544473716851
AT2G22740_at 7.8495563544711 8.07094026298697 7.85066566417042 7.86080318381502 8.22438550590258 8.19039278264055 8.12358503147547 8.0522985197052 8.19513367425233 8.43238734558505 8.11605481408423 8.05013280179898 8.03873634660767 7.87566398160205 7.77643649869462 8.0900371833646 8.05189694728925 7.80879880999315 8.37881845163758 0.137576555163434 0.134958424660498 0.138365729841223 0.134958424660498 0.138677525852219 0.135874486033748 0.140843932333659 0.142001307986302 0.148173535381477 0.141327130369090 0.142774187281462 0.135665373671289 0.148507978085366 0.145236168696914 0.152030320475961 0.138304354589448 0.136267378452177 0.144379411801148 0.139986384254350 2 2 - 9671344 9671895 9671524 9669718 9674061 - gene protein_coding_gene FALSE TRUE AT2G22740.1|AT2G22740.2 SUVH6 (SU(VAR)3-9 homolog 6) Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Suppressor of variegation 3-9 homolog protein 6) (Su(var)3-9 homolog protein 6) (Protein SET DOMAIN GROUP 23) (SUVH6) [Arabidopsis Thaliana] (GB:Q8VZ17;GB:Q9C5P2;GB:Q9ZQ40); similar to SUVH5 (SU(VAR)3-9 HOMOLOG 5) [Arabidopsis thaliana] (TAIR:AT2G35160.1); similar to Os09g0362900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062989.1); similar to putative histone-lysine N-methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC98666.1); similar to Os08g0400200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061753.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) -0.176005037794941 -2.0777832246371 0.0622077615285773 1 1.20662608360267 16.1835364948564 -0.176005037794941 0.0407141674278806
AT3G05470_at 1.74908675447258 1.99481615641539 2.20192923960239 2.24330878091928 1.62758657284118 1.87601894330664 2.15486900351443 1.86257149774154 1.75484816552163 1.80598719091466 2.48486975161609 2.05181706749736 1.52550080017564 1.92232772960109 2.62443396353238 1.71571463788851 2.08699432453124 2.25547752970717 1.65604494682241 0.223273850394682 0.227837226206107 0.217669024837121 0.218636437433362 0.217669024837121 0.223825862325179 0.227747793828041 0.221242746784334 0.236534457769701 0.218995598532839 0.230385101985300 0.218017560162476 0.224198259809824 0.223566583905330 0.217669024837121 0.21812152355074 0.227734653552629 0.226482357344527 0.223458837489910 3 3 - 1579694 1580220 1580003.182 1579673 1582553 - gene protein_coding_gene FALSE TRUE AT3G05470.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to Fh5 (FORMIN HOMOLOGY5), actin binding [Arabidopsis thaliana] (TAIR:AT5G54650.2); similar to Actin-binding FH2 [Medicago truncatula] (GB:ABE86641.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) 0.195653452806919 2.07745332752681 0.0622431097569072 1 1.206142947799 3.87494940692914 0.195653452806919 0.0791621871530056
AT4G10360_at 6.74657175978881 7.55782340543579 7.4042978782558 7.04042143320583 7.7355639646516 7.31177244011965 7.92975602548619 8.09303683088921 6.20093089835492 7.03664550907963 6.97046927815916 7.58991097228078 7.93289895853081 7.54657901731945 6.5220263809316 7.99680730163375 7.95999776343387 7.43340442444761 6.96743186600226 0.275113002245526 0.254718904772999 0.279595917236068 0.272899807602434 0.260588170297018 0.263128332553715 0.273085061539276 0.262898400058303 0.301758930016659 0.254561976953063 0.265198058896382 0.270161572965357 0.254561976953063 0.268976297379819 0.27685134673727 0.25728670064841 0.270719108374065 0.263197920913059 0.259142878460961 4 4|0 +|/ 6421052 6421997 6421585.222 6420451 6422376 + gene protein_coding_gene FALSE TRUE AT4G10360.1|AT4G10360.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31300.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53332.1); similar to Os05g0485300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055873.1); similar to Os01g0817100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044622.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Protein of unknown function DUF887, TLC-like; (InterPro:IPR010283) 0.275112963969039 2.07728964861658 0.0622606548606332 1 1.20590325000820 14.5919127271813 0.275112963969039 0.172777136536243
AT3G19280_at 4.51848640950294 4.4694455318545 3.77707785398856 3.98538852303495 3.87678164898859 3.80736484172124 3.9371069308756 3.67042839627866 3.80302789314367 3.81842204102659 3.78821929064015 3.89809348362054 3.86469838394548 3.92381866702811 3.80967757023156 3.95652735183196 3.37849957017017 3.26599892654018 3.8318219606353 0.248779649207876 0.248397062820234 0.255480752005510 0.248287085539876 0.244779849508153 0.248100144599117 0.253816246256616 0.245466576729959 0.262389514497855 0.241293536091279 0.246630498299618 0.242974185001836 0.243791721187379 0.252067902621176 0.251565950923608 0.240682863137013 0.252627327082064 0.247160921586588 0.244976841599927 3 3 - 6681434 6682070 6681721.818 6681202 6683898 - gene protein_coding_gene FALSE TRUE AT3G19280.1 FUT11 (Fucosyltransferase 11); 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with core α1,3-fucosyltransferase activity. Identical to Glycoprotein 3-alpha-L-fucosyltransferase A (EC 2.4.1.214) (Core alpha-(1,3)-fucosyltransferase) (Fuc-T C3) (FucTA) (FucT1) (AtFUT11) (FUT11) [Arabidopsis Thaliana] (GB:Q9LJK1); similar to FUT12 (fucosyltransferase 12), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G49710.1); similar to Fuct c3 protein [Vigna radiata var. radiata] (GB:CAB52254.1); similar to alpha 1,3 fucosyltransferase [Populus alba x Populus tremula] (GB:CAI70373.1); similar to alpha 1,3 fucosyltransferase [Medicago sativa] (GB:AAL99371.1); contains InterPro domain Glycosyl transferase, family 10; (InterPro:IPR001503) -0.184639621481046 -2.07653221051746 0.0623419070790843 1 1.20479412061612 7.7819844939154 -0.184639621481046 0.0603795822827192
AT3G20260_at 0.482823459831086 0.654267201994247 0.840218154178244 0.916233349218578 0.855063855331956 0.982677285761412 1.45977868950742 0.923163432173273 1.07222012570456 1.38120372848831 1.96620526867433 2.16895376145913 1.67810770765103 1.77396611837212 1.85949148273237 1.28261460903610 1.27579801892619 1.69343869724785 1.47464724098541 0.211032649549428 0.215530320421248 0.215729096062785 0.21482197912871 0.212692416116991 0.216057340201552 0.211032649549428 0.212520740223005 0.214108308586302 0.211937473803938 0.216613405164682 0.225059946995634 0.224384020889656 0.219056909850293 0.214305130053784 0.219061660728435 0.220358277321804 0.216290085627098 0.226790075552458 3 3 - 7064206 7064862 7064541 7064060 7066509 - gene protein_coding_gene FALSE TRUE AT3G20260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73850.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32213.1); similar to Os08g0519600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062260.1); similar to Os01g0129500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041917.1); contains InterPro domain Protein of unknown function DUF1666; (InterPro:IPR012870) 0.210752445766169 2.07633063142200 0.0623635478001385 1 1.20449897060334 2.40011767336877 0.210752445766169 0.100820106776556
AT3G50790_at 7.91133795267215 7.58546824060879 7.22425854775105 7.19510797806256 7.76742196245974 7.37956012617143 8.59823328435896 8.30187186062343 8.39769444915387 8.42860260776187 8.89846027710713 8.87154011010663 8.46637974303687 8.7540579376561 8.93696346406969 8.76011932025642 8.4106059371459 8.50330735180433 8.41948371991107 0.138816113588352 0.128383351176148 0.141456608783535 0.134165395790030 0.130835123445388 0.135742597489385 0.131938467199889 0.13056995939307 0.131939106296207 0.130659527347726 0.133855142827030 0.135498366981599 0.13501842570993 0.130036197438229 0.132082506447852 0.125489327236275 0.139927317380936 0.12735840215697 0.128951125881258 3 3|0 -|/ 18891154 18891924 18891472.125 18890904 18892963 - gene protein_coding_gene FALSE TRUE AT3G50790.1 late embryogenesis abundant protein, putative / LEA protein, putative similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G34340.1); similar to putative late embryonic abundant protein EMB8 [Oryza sativa (japonica cultivar-group)] (GB:BAD25578.1); contains InterPro domain Protein of unknown function UPF0017, hydrolase-like; (InterPro:IPR000952); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain AB-hydrolase YheT, putative; (InterPro:IPR012020); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.211360836124511 -2.07579646844701 0.0624209276552528 1 1.20371690693855 16.3031272573836 -0.211360836124511 0.101691921494357
AT4G25380_at 3.03428925795151 2.85127382893861 3.75455450208779 3.19306372708713 2.79980616576388 3.10095899253010 3.17985252152176 2.7985223796787 3.27814797957808 3.35453955293878 3.44620645734495 3.48703577849951 3.2913828621307 3.08744356561955 3.63526623698046 3.21960788797000 3.8494581170676 3.62588572009842 3.05123324085961 0.182308737526984 0.184556306819690 0.184805564731459 0.185786317068881 0.182308737526984 0.185369998795043 0.182308737526984 0.190068046325469 0.199219675333364 0.18473000382924 0.185293113024497 0.188037294154641 0.185650737035749 0.187668730633813 0.190818244991175 0.182308737526984 0.191551091405594 0.185999749368010 0.194178720606073 4 4 - 12975974 12976287 12976130.636 12975946 12976338 - gene protein_coding_gene FALSE TRUE AT4G25380.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 10 (AtSAP10) (SAP10) [Arabidopsis Thaliana] (GB:Q9STJ9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT4G22820.2); similar to zinc finger protein 216-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87150.1); similar to Os03g0792900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051527.1); similar to Os01g0718000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044076.1); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.236711793466495 2.0756986009341 0.062431445991293 1 1.20357362812871 6.43066988161463 0.236711793466495 0.132346911934599
AT2G32860_at 8.0258498849548 7.9662526984528 7.81452284008692 7.64582900687562 8.37983464374273 7.85443931259063 9.03525836397141 8.71125146761829 8.5284173883001 8.36446178391448 8.90547837645858 9.1521493245598 8.3794623560375 8.43875044091288 9.00670873877694 8.87049854406784 8.01587111189394 8.23105033041628 8.76195249045609 0.130123888504566 0.124475074432033 0.130231622407939 0.134629278593095 0.135027177562067 0.129246165830475 0.131522201663888 0.125509891649613 0.131289152618275 0.121767010694603 0.122280266349778 0.124119631900688 0.130347204436770 0.136054690092466 0.122572377716900 0.125608665382771 0.127964656997726 0.132404771256775 0.128416832137171 2 2 + 13949483 13950628 13950253.182 13947264 13950881 + gene protein_coding_gene FALSE TRUE AT2G32860.1|AT2G32860.2 glycosyl hydrolase family 1 protein similar to DIN2 (DARK INDUCIBLE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G60140.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85996.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to DIN2 (DARK INDUCIBLE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G60140.1); similar to OSIGBa0106G07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67305.1); similar to putative prunasin hydrolase isoform PHA precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD61620.1); similar to OSJNBa0022H21.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE05483.2); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.218805527129219 -2.07557687859155 0.0624445304635117 1 1.20339542921345 16.7674581308437 -0.218805527129219 0.111217771597712
AT4G37295_at 2.87405941501939 2.79826713589145 3.07199264613226 3.21652477074291 2.99171869246909 2.83217697240304 3.11575312549318 3.20349250027364 3.19501649040096 2.72651855146504 3.07742951612508 2.78799973393256 3.37411963408894 3.28546909860162 3.03980739712600 3.10031923752861 3.55264095806884 3.73268317631276 2.84210857579682 0.197389252879761 0.202173063035934 0.198066679893953 0.205617919195275 0.198976987416207 0.195433104566989 0.198568128630212 0.190587049963351 0.199284697222787 0.202361605620394 0.196682323383948 0.192488634675353 0.192551165353851 0.199038011116938 0.194779659947319 0.190964888751443 0.196092528717037 0.207914047759782 0.199753228361238 4 4 + 17553623 17553858 17553740.182 17553554 17554099 + gene protein_coding_gene FALSE TRUE AT4G37295.1 unknown protein 0.176402140509761 2.07542216024806 0.0624611655542152 1 1.20316893054259 6.09550972390011 0.176402140509761 0.0423138162617260
AT1G01460_at 0.822647423594296 0.69480761977959 0.778029893854456 1.18443925785331 1.18423860990304 1.08446093713729 1.07633248674434 0.821926981390844 0.832866448583613 1.15793174961008 1.23070064005026 1.08084337143040 0.585926448650959 0.792209900198405 0.904454237113381 1.15341405020006 1.26212089981900 1.31035742353507 0.534880922476586 0.214421167882478 0.217510787197132 0.221884861458338 0.216470601151958 0.225290217921062 0.226381433324740 0.229191854814868 0.216866086707017 0.221558667354227 0.218861817588445 0.219611351520786 0.218604382477325 0.228165300072465 0.217859054382866 0.219778928740854 0.223768148666284 0.214421167882478 0.227724528559360 0.220309267957674 1 0|1 /|+ 170281 171114 170686 168723 171165 + gene protein_coding_gene FALSE TRUE AT1G01460.1 phosphatidylinositol-4-phosphate 5-kinase family protein Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Identical to Phosphatidylinositol-4-phosphate 5-kinase 10 (EC 2.7.1.68) (AtPIP5K10) (1-phosphatidylinositol-4-phosphate kinase 10) (PtdIns(4)P-5-kinase 10) (Diphosphoinositide kinase 10) (PIP5K10) [Arabidopsis Thaliana] (GB:Q9LMN1;GB:O23705); similar to ATPIPK10 (ARABIDOPSIS PHOSPHATIDYLINOSITOL PHOSPHATE KINASE 10), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT4G01190.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498) 0.200986938980511 2.07451055572306 0.0625592648239354 1 1.20183452376833 1.89680860708120 0.200986938980511 0.0875918760919131
AT3G42580_at 1.49296130277656 0.91777019077376 1.11166423457524 1.08806671607495 0.817357771853446 1.32188679722925 0.518811487808345 0.859566396551351 1.06177478890776 0.661979102349475 1.11010325759660 1.08481449271217 1.60959631040935 1.44797481830740 0.916896748885811 1.24198724748905 1.10863928342812 1.04357168992511 0.78740247960384 0.184505111395306 0.183109016426282 0.184909028114737 0.189922094363596 0.187100938945694 0.182595786097188 0.189176236937671 0.182952187823806 0.186358618758625 0.189364523876522 0.187343666393957 0.184500613397758 0.192651288632006 0.190557996985976 0.190759177083526 0.183989013557765 0.182710613109189 0.182595786097188 0.183851542164967 3 3|0 +|/ 14705867 14706753 14706484.8 14701807 14706913 + gene protein_coding_gene FALSE TRUE AT3G42580.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) 0.247931196464783 2.07365170761818 0.0626518197825773 1 1.20057754432040 2.03226066456264 0.247931196464783 0.145001335213709
AT3G05520_at 8.0251347931322 7.8290552440193 7.79692247507657 7.6556249858934 8.15621744215081 8.22446620998309 8.35068921793028 8.09179097381652 6.8419377693903 7.73179653161912 8.07399709327684 7.8409686032151 7.92170303009125 7.81890395212158 7.8703821758586 7.4074195081522 7.80827662289944 7.75421826992877 7.40234355195988 0.128080678760547 0.125588974133254 0.136987691839884 0.129103932681955 0.133427141699121 0.132182192533143 0.123848362492345 0.129258396662814 0.154502967966329 0.131667620793983 0.134076120204105 0.126866291996025 0.130434333961466 0.138448032995415 0.132276289136663 0.127138552991733 0.132451268035487 0.129936052595468 0.126696350828833 3 3|0 +|/ 1599830 1601061 1600529.25 1598553 1601306 + gene protein_coding_gene FALSE TRUE AT3G05520.1 F-actin capping protein alpha subunit family protein Identical to F-actin capping protein subunit alpha (CapZ-alpha) [Arabidopsis Thaliana] (GB:O82631;GB:Q9MA66); similar to F-actin capping protein, alpha subunit [Medicago truncatula] (GB:ABE92863.1); contains InterPro domain F-actin capping protein, alpha subunit; (InterPro:IPR002189) 0.185382296835633 2.07284905458602 0.0627384354986721 1 1.19940298778271 15.5849091383833 0.185382296835633 0.0624193479447671
AT2G42760_at 6.07821939508466 6.39600351310241 6.78007680051091 6.7977814936451 6.00095318878159 5.32160141016579 6.76594579472411 7.42921742694051 5.85751617699084 7.27123288272523 6.42389261998240 6.50008399412029 6.41109617429121 6.92156833135634 5.82483882711543 7.13234006809733 6.49137270387966 6.43359642776212 6.74661463879742 0.207082608545498 0.207020520175707 0.208952409217514 0.208683351677151 0.203574033414848 0.209914706308485 0.213047332939768 0.206871889658385 0.251336769211033 0.211187157594256 0.210200013738339 0.208633196077664 0.203477170752823 0.208539966270653 0.222223370191148 0.203477170752823 0.212655743034660 0.203477170752823 0.210823554282074 2 2 - 17803479 17803992 17803752.636 17803061 17804308 - gene protein_coding_gene FALSE TRUE AT2G42760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31560.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80754.1) -0.275007949349654 -2.07262809993222 0.0627622989169514 1 1.199079685563 13.0174598159511 -0.275007949349654 0.173292303629257
AT2G28380_at 5.68177123015167 5.75588006117181 4.87612417503199 5.18304767640829 5.11733037226968 5.52819513879197 5.31943469340824 6.12937640932091 5.20443740127559 5.28983427960533 5.63237852831916 5.25774511120301 5.30918158058483 5.20658840156718 5.31526422520395 5.57930200635804 4.96507631563043 5.26616152468511 5.4278662350727 0.192686119702881 0.186393708619907 0.188387991677836 0.190322791209948 0.184007945919105 0.186381751544832 0.187839108776306 0.188130421294894 0.204101936110467 0.194020078149531 0.194063997486215 0.184007945919105 0.185396727489040 0.191088367685290 0.195774256286686 0.184007945919105 0.193476517263709 0.185126900767816 0.185717432992842 2 2 - 12141320 12141732 12141556.909 12140888 12143257 - gene protein_coding_gene FALSE TRUE AT2G28380.1 DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding Encodes a cytoplasmic dsRNA-binding protein. similar to DRB5 (DSRNA-BINDING PROTEIN 5), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT5G41070.1); similar to Double-stranded RNA binding [Medicago truncatula] (GB:ABE80978.1); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.268179175755794 -2.07249597172436 0.0627765730403165 1 1.19888636097917 10.7608157280752 -0.268179175755794 0.166394519984762
AT1G75500_at 8.50805371382526 8.96917032938789 8.44313491216054 8.57173450987948 9.30484359065956 8.3972862356857 8.9363428255534 9.35974060133482 9.0658886654025 8.25909798536657 10.0011556375529 10.1431542970825 9.75285365648088 9.70022477486547 9.97103311846806 9.60171041383088 8.6717219554752 8.83021656945202 8.87089776999116 0.151188837091488 0.14327907844843 0.148457629824118 0.149169015764155 0.147569656672322 0.157552041023849 0.14327907844843 0.144160982094242 0.145819988831275 0.1533946201296 0.147033464548635 0.149640346288705 0.14525975991728 0.159350256719807 0.150050038175861 0.14327907844843 0.177892898309981 0.147274704244709 0.147517684140710 1 1 - 28342004 28342708 28342445 28341453 28343902 - gene protein_coding_gene FALSE TRUE AT1G75500.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G53210.1); similar to putative MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAD13218.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.293985136942613 2.07204741764797 0.062825054233494 1 1.19823008981332 17.9692734780547 0.293985136942613 0.192090085854037
AT3G19750_at 2.50608833262013 2.60995366900359 3.44810272997394 3.11519612466637 2.65032176475867 2.85867421162285 3.33417741758085 2.68415794651913 2.29471941254082 2.16704872453511 2.82569062456124 2.43153311551435 2.54336006858965 2.24737599926148 2.59433089616785 2.59206494267424 2.77646021804871 2.38620586427242 2.47119422988744 0.208739676356968 0.206556601312753 0.202275576917906 0.206221564135128 0.207329105034030 0.203893087901442 0.202693155276376 0.203024781687523 0.212964378088396 0.210961344214212 0.205973387576612 0.206796056590271 0.203334706295221 0.202082157791919 0.222000140174252 0.201302901405863 0.215059127651029 0.203805841671128 0.207314418347168 3 0|3 /|- 6861168 6862214 6861673.222 6861152 6862936 - gene protein_coding_gene FALSE TRUE AT3G19750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50150.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37293.1); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) 0.236559813403159 2.07201804643733 0.0628282300010109 1 1.19818711921437 5.33114161048854 0.236559813403159 0.132649630670944
AT2G19650_at 7.0044877893839 7.38656493869734 7.70067533027454 7.74758167673926 7.74848158509299 7.41418312918456 8.60001079241828 8.45963731915462 7.38389498571581 7.9265366111067 7.24349292829724 7.32139765606138 8.02150203006904 7.47956491024108 6.54803912508133 8.07934146641939 8.1241867139945 7.46641421352533 7.88693035463695 0.192048540786490 0.187215147289054 0.205700972389540 0.197152642906774 0.187244751494742 0.188609715524276 0.192615734280802 0.194796866647791 0.208306251762251 0.183106156220077 0.190240928996144 0.18905934356346 0.187074153442439 0.186687084473331 0.207158250867869 0.186011711036284 0.194283084341356 0.201628340118328 0.190910058141813 2 2 - 8500781 8501312 8501016.636 8500557 8502905 - gene protein_coding_gene FALSE TRUE AT2G19650.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19660.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37620.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G04680.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.203453191474680 -2.07166549359386 0.0628663616533858 1 1.19767134618823 15.3916760022587 -0.203453191474680 0.0915135778622226
AT4G18950_at 5.02452206140516 5.65249450410741 5.67796573445443 5.86344257935946 5.56054572620377 4.47496123021002 5.52670318321279 5.29550580658439 4.94612730759258 4.67348843643873 5.38912830685402 5.86050642119573 4.80902347440748 5.18993892624515 5.4025025932293 5.39269857711874 4.6690683434133 5.85206904001437 4.44274417929751 0.216393054647954 0.220879008197636 0.220196021438381 0.215165297785167 0.215752592576199 0.214218351348397 0.222718740041889 0.223870149144566 0.233064048078822 0.214194555054419 0.224873750856445 0.214290353517702 0.219961561065692 0.228507571930155 0.228255531223056 0.222469768214147 0.234369730941414 0.220120498466686 0.215737075499105 4 4|0 +|/ 10377070 10378116 10377716.667 10375375 10378401 + gene protein_coding_gene FALSE TRUE AT4G18950.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G58760.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06434.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.326293040631485 2.06992266420178 0.063055184466429 1 1.19512213371108 10.3885527372352 0.326293040631485 0.223012139976033
AT2G29390_at 6.43495863774348 6.32826168308824 5.91694631200997 5.91352789330947 6.43477617553999 6.48142531020902 6.7213079279578 6.58188883175718 6.23618376995012 6.4169088343468 6.87873106497219 7.16843281553398 7.18515783160455 7.05132061121001 6.74700694107046 6.83173551648924 6.9786067996106 6.70580268699415 6.15331343980403 0.208057953323136 0.213695603911522 0.226273392733187 0.208057953323136 0.208675508662344 0.217296427634276 0.210789093465501 0.212298960793945 0.233628871091441 0.212735286649383 0.216265800651085 0.212117978858407 0.211597357718323 0.208057953323136 0.219619855987787 0.208057953323136 0.221664205250131 0.216052294935582 0.211585330246729 2 2|0 -|/ 12617990 12618798 12618383.111 12617620 12619971 - gene protein_coding_gene FALSE TRUE AT2G29390.1|AT2G29390.2|AT2G29390.3|AT2G29390.4|AT2G29390.5 SMO2-1 (sterol 4-alpha-methyl-oxidase 1); C-4 methylsterol oxidase|SMO2-1 (sterol 4-alpha-methyl-oxidase 1) Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. similar to SMO2-2 (sterol 4-alpha-methyl-oxidase 2), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT1G07420.1); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088)|similar to SMO2-2 (sterol 4-alpha-methyl-oxidase 2), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT1G07420.2); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.172305960682888 2.06989942305032 0.063057706082978 1 1.19508814469802 12.9577122455199 0.172305960682888 0.0314415854909781
AT4G39400_at 9.39111196371983 9.38720275886693 9.20842818359767 9.20957373189828 9.5264478667504 9.48842928273759 9.17074040039546 9.3241981290419 10.2548437677183 9.91961543924807 10.7559013131396 10.4903424432657 10.7433830191875 10.4794308469397 10.6156107455435 10.3447127937132 10.2061596451084 10.1840778750862 10.3504514718335 0.0684802648044707 0.0688889726640789 0.0739832090601423 0.0713239950451769 0.0668953950522702 0.0715140225506246 0.0685390449690588 0.0676571894740427 0.0723620353864799 0.0712208838471357 0.070143751892934 0.0681973764663873 0.0682181693231592 0.0760810493911504 0.0704391544798848 0.0684370045286834 0.0702845894818909 0.0698060506755234 0.0698797714779297 4 4 + 18327814 18328297 18328061.182 18324655 18328820 + gene protein_coding_gene FALSE TRUE AT4G39400.1 BRI1 (BRASSINOSTEROID INSENSITIVE 1); kinase Encodes a plasma membrane localized leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. BRI1 ligand is brassinolide which binds at the extracellular domain. Binding results in phosphorylation of the kinase domain which activates the BRI1 protein leading to BR responses. Residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. Identical to BRASSINOSTEROID INSENSITIVE 1 precursor (EC 2.7.11.1) (AtBRI1) (Brassinosteroid LRR receptor kinase) (BRI1) [Arabidopsis Thaliana] (GB:O22476); similar to BRL3 (BRI1-LIKE 3), protein binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G13380.1); similar to BRL1 (BRI 1 LIKE), kinase [Arabidopsis thaliana] (TAIR:AT1G55610.1); similar to BRL2 (BRI1-LIKE 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G01950.1); similar to brassinosteroid receptor [Pisum sativum] (GB:BAC99050.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81680.1); similar to Systemin receptor SR160 precursor (Brassinosteroid LRR receptor kinase) (GB:Q8L899); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.171194281110655 2.06973745588073 0.0630752818228309 1 1.19485127989478 19.6644778203833 0.171194281110655 0.0273685178690715
AT3G15220_at 5.5424641356833 5.20232039213242 5.12630960939766 5.1840710914528 5.46109448519727 5.42709105888427 4.74177983297706 5.10270379874633 4.69548064070589 5.36280616301635 5.45660149190512 5.56416621381227 5.24199189570231 5.20622123955599 5.0776708197316 5.42094604885948 5.62437379229613 4.71046480781374 5.06301489131795 0.213348446505554 0.226555078092835 0.22378531698541 0.212483888673863 0.212738940003762 0.215694664859148 0.227328093241742 0.215634796359894 0.214877120346623 0.215542302080517 0.217304092427643 0.212483888673863 0.221377318445384 0.212483888673863 0.221036772991634 0.221348914839027 0.242284067445014 0.225238650346907 0.214941772541705 3 0|3 /|- 5126912 5127847 5127314.778 5126604 5132313 - gene protein_coding_gene FALSE TRUE AT3G15220.1 protein kinase, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53165.2); similar to BnMAP4K alpha1 [Brassica napus] (GB:CAA08757.1); similar to putative MAP4 kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83751.1); similar to BnMAP4K alpha2 [Brassica napus] (GB:CAA08758.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.199847580855534 2.06972051257704 0.0630771206788033 1 1.19482650199400 10.3875985190870 0.199847580855534 0.0866062948369407
AT3G15080_at 4.08977854027872 4.03221044259317 4.49646178537019 4.00053228036725 3.54314952384523 3.31410447095173 4.05724036450826 4.06028816347396 2.96273925201941 3.19992913060765 2.93152359731492 2.57698563093411 2.89703636502793 2.98241788501351 2.97346851183902 3.42158380487421 2.80434174595726 2.66305298387794 3.12695988475265 0.23101045112725 0.230816270758069 0.230414361422975 0.230044584778402 0.233382467944389 0.237265590134673 0.236136516956454 0.231871999096103 0.246603670915434 0.234829602943444 0.230044584778402 0.230239314903677 0.234541632415077 0.230237208172227 0.230044584778402 0.230044584778402 0.237082549993519 0.237602379540922 0.234154341645708 3 3|0 +|/ 5075194 5076295 5075667.889 5074223 5076531 + gene protein_coding_gene FALSE TRUE AT3G15080.1 exonuclease family protein similar to exonuclease [Arabidopsis thaliana] (TAIR:AT3G27970.1); similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G40310.1); similar to PREDICTED: similar to XPMC2 prevents mitotic catastrophe 2 homolog [Danio rerio] (GB:XP_700471.1); similar to Os08g0377400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061683.1); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) -0.205779401384149 -2.06942691717927 0.0631089925976252 1 1.19439716007923 6.95064273212261 -0.205779401384149 0.0950590205789485
AT1G13030_at 3.52589199374429 3.4588084593393 3.69991486437487 3.61667257127520 3.02805442418939 3.28759492624787 3.93122243841211 3.66982854441283 3.33942841496583 3.49887230336282 3.12107179936687 3.51451040653576 3.28566438826094 2.99635127902417 3.43391148100598 3.09526725281132 3.66673107213175 3.45442736538484 3.53250019521652 0.13959972545635 0.128238480866445 0.129493431603325 0.133607991953941 0.139521160076269 0.130783442776677 0.142710991825401 0.139811789479154 0.131827444824784 0.136137545700512 0.133060801393074 0.129434964956679 0.132429378975427 0.128545587171869 0.132989176531233 0.128010018372082 0.135912274170718 0.132258947656347 0.128279580868648 1 1 - 4444316 4445227 4444771.182 4444041 4447404 - gene protein_coding_gene FALSE TRUE AT1G13030.1 sphere organelles protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to hypothetical protein LOC_Os12g19070 [Oryza sativa (japonica cultivar-group)] (GB:ABA97137.1); similar to Os12g0288600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066594.1); contains domain gb def: Coilin p80 (PTHR15197:SF1); contains domain FAMILY NOT NAMED (PTHR15197) -0.187160209869246 -2.06863952305544 0.0631945449111232 1 1.19324582130376 6.91621128695628 -0.187160209869246 0.0663766768413186
AT4G03610_at 1.78636639111961 2.14522527764417 1.73785676478468 1.67074156944241 1.46035482760781 2.07729763064997 2.1604112384465 2.36912276400969 2.09094561332668 1.97594164844437 2.21974650452321 1.81214764544561 1.69571841214477 1.65020122565180 2.38073753919174 1.71985836913453 1.46383223337773 2.5097378290545 1.99028446305101 0.243590170137015 0.241733056274531 0.246468208556814 0.242976024070563 0.242734703080102 0.243370434835663 0.243237562480507 0.244337518578157 0.248307610636453 0.242333802090501 0.247105168413331 0.241733056274531 0.249274850637239 0.241733056274531 0.241733056274531 0.249590957645432 0.241733056274531 0.247577166909965 0.243888119979472 4 4|0 +|/ 1605751 1606549 1606066.7 1605037 1606857 + gene protein_coding_gene FALSE TRUE AT4G03610.1 phosphonate metabolism protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30300.1); similar to Os03g0643200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050752.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93323.1); similar to Os12g0615500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067275.1); contains domain Metallo-hydrolase/oxidoreductase (SSF56281) -0.233139245737821 -2.06850961798173 0.0632086699161266 1 1.19305588827613 3.90119941367453 -0.233139245737821 0.129208581972348
AT1G16570_at 6.8709374716464 6.36939321769226 6.76177557367267 6.72340767902538 6.72048329368408 6.74518067193818 6.16637104635216 6.18933497668596 6.02438937148764 6.2839322231906 5.96652878597 5.92336963685011 6.02503620504933 6.20222850761514 6.27691821178532 6.16744467741459 6.10942534685042 6.45257554764338 5.92813100169208 0.186726451592620 0.182619719813337 0.186495868310808 0.187173584971209 0.185713075690475 0.185490966188199 0.182619719813337 0.190255843710667 0.193797008078105 0.187166834692547 0.185704739911490 0.187371645607724 0.186758328638934 0.18915771916206 0.189718493873917 0.185604552679423 0.188845306736046 0.182827845986831 0.194574203037206 1 1|0 -|/ 5670904 5671724 5671428.556 5670570 5673593 - gene protein_coding_gene FALSE TRUE AT1G16570.1 glycosyl transferase family 1 protein similar to Myb, DNA-binding; Glycosyl transferase, group 1 [Medicago truncatula] (GB:ABE88776.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.200162979629865 2.06847386376448 0.0632125581115739 1 1.19300361315571 12.6779896898475 0.200162979629865 0.0872435889021036
AT4G33490_at 7.13138476835775 7.24838002422394 5.56122856740987 5.37157112449452 6.41159203729617 6.19455610065107 5.36802355553102 4.92595681524514 4.95882356430586 4.42857849912924 6.26929465278146 5.51738667679767 4.9732336614502 5.12303193167529 5.86844333157356 4.71491253622177 4.72952648941709 5.97975951876728 4.72482984184366 0.20583612934742 0.201828880137818 0.201815789138645 0.198114912254642 0.201272921472449 0.203355571317168 0.203487567257017 0.203026637592568 0.202372678979966 0.199960659563634 0.201217170597527 0.196940134366956 0.209142691565594 0.206412429715623 0.199701995102668 0.198208076020746 0.196940134366956 0.196940134366956 0.201635189911051 4 4|0 -|/ 16108813 16109668 16109216.333 16108762 16110679 - gene protein_coding_gene FALSE TRUE AT4G33490.1 pepsin A similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G44130.1); similar to nucellin-like protein [Daucus carota] (GB:BAD80835.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.2045859823497 2.06844642420101 0.0632155422588724 1 1.19296349486295 11.0770995749487 0.2045859823497 0.093543279260747
AT3G51270_at 5.22949281413492 5.53856021336665 5.18014360959549 5.37436192902677 5.84559253974463 5.48803477228418 5.16618056124633 4.89219638338377 5.80089653571972 5.27112457862559 5.66031695005569 5.87187111460432 5.11435093468259 5.66082838974511 5.95878745504317 5.54192221440336 5.58961770432002 5.7407937679581 5.39394091418545 0.202033842903374 0.199868287489258 0.201204031536486 0.200126475190167 0.203263552431233 0.197239382843837 0.192459248953991 0.196142595907284 0.203422434720813 0.194233192493810 0.193978173345840 0.192933611382980 0.197271931624815 0.198342745085662 0.193103578913008 0.198087738524266 0.210586146864114 0.200813825054598 0.202939186908217 3 3|0 +|/ 19046655 19047724 19047342.7 19044547 19047751 + gene protein_coding_gene FALSE TRUE AT3G51270.1 ATP binding / protein serine/threonine kinase similar to RIO1 family protein [Arabidopsis thaliana] (TAIR:AT2G24990.1); similar to Os01g0888700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045041.1); similar to putative RIO kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD82370.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein of unknown function RIO1; (InterPro:IPR000687) 0.209541388235574 2.06799786089548 0.0632643438935299 1 1.19230769701462 10.9048028907787 0.209541388235574 0.100335640452698
AT2G38770_at 4.72855187302668 4.91959068910834 4.39203025358368 4.84394667165345 4.8792921801013 4.19686238911651 5.03215348150421 5.40444252525206 4.59277449052998 3.95477354007230 3.80417222454840 4.12180818487233 4.09258274697429 3.86539027165495 4.42586645742077 4.11317112359592 3.87007588360687 4.36183165649794 3.93165091967898 0.237725930724735 0.239515620328928 0.245966130880980 0.233353177861083 0.236969246696705 0.252769477121803 0.240373670920456 0.236765851726065 0.246424805363742 0.242500777414992 0.251190450678541 0.233353177861083 0.244209039899137 0.242300806048161 0.246342596643034 0.239483015712424 0.238515403841705 0.248317308188497 0.233353177861083 2 2|0 -|/ 16210691 16211309 16210881 16210041 16217416 - gene protein_coding_gene FALSE TRUE AT2G38770.1 similar to LBA1/UPF1 (LOW-LEVEL BETA-AMYLASE 1), RNA helicase [Arabidopsis thaliana] (TAIR:AT5G47010.1); similar to putative aquarius [Oryza sativa (japonica cultivar-group)] (GB:AAT78813.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96318.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE89230.1); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain DNA2/NAM7 HELICASE FAMILY MEMBER (PTHR10887:SF5); contains domain no description (G3D.3.90.500.16); contains domain no description (G3D.3.40.50.300); contains domain no description (G3D.1.20.58.60); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.260511216694868 -2.06799380506248 0.0632647853114937 1 1.19230176764893 8.92040640895504 -0.260511216694868 0.159081748538396
AT1G55110_at 7.8231410547956 8.08064383808986 8.44908747092244 8.32391679964332 8.91261580198166 8.58610549068873 8.22324470512267 7.3900630454655 7.28359984540014 7.24728379501134 6.67126178789382 6.99269750714968 7.70421687778942 7.4216129203229 6.47476041162427 7.72877474807352 7.70594934506901 6.52963198353576 7.4125658761953 0.200693346527589 0.19315830450452 0.199794067651761 0.192034717725771 0.200673438670954 0.198605997029731 0.192525880688327 0.19226646330858 0.207308548737338 0.189441329222975 0.188236642667573 0.189932479298255 0.189820882022538 0.191590948534345 0.201580640236875 0.196268926214682 0.195368561525307 0.190049020600316 0.187241763817451 1 1 - 20564113 20564631 20564394.636 20563951 20566838 - gene protein_coding_gene FALSE TRUE AT1G55110.1 ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 7/ATIDD7; nucleic acid binding / transcription factor/ zinc ion binding similar to ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G13810.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE79766.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.263894127710335 2.06795005009621 0.06326954758265 1 1.19223780099776 15.457650460781 0.263894127710335 0.16259552064197
AT2G06000_at 3.38097926097391 3.83331881674951 3.79242349962117 3.62672297875004 4.34803035445941 3.82638253987009 3.95625290970314 3.77271150393522 2.95726306321036 3.49610064632342 3.56734209156612 3.68077717547205 3.75344539390662 2.97519913366875 3.43857598169378 3.70387542109779 3.95463008141098 3.25727766157261 3.27202275906264 0.221509523485915 0.217842808323071 0.219522311082438 0.219899447468929 0.221462441684694 0.238129140917485 0.217842808323071 0.223624482045936 0.240328386187125 0.217842808323071 0.229765416248195 0.221507793755805 0.219577016665777 0.220890116667253 0.221040606324031 0.220488498115243 0.231910887934861 0.227745409042521 0.22298363761911 2 2 - 2328004 2328565 2328313.273 2327383 2329688 - gene protein_coding_gene FALSE TRUE AT2G06000.1|AT2G06000.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAM15782.1); similar to OSIGBa0140O07.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67244.1); similar to Os04g0446100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052907.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.23108454917559 2.06790981370053 0.0632739271922646 1 1.19217897870110 7.20869566154817 0.23108454917559 0.126917826351498
AT1G02270_at 8.41984691205022 8.41020515814765 8.89608894523896 8.93348320320955 8.67547772973873 8.68696684700119 8.9005943718225 8.58762038563159 8.31746038706809 8.21976032415673 8.30938657518984 8.20649390527478 8.36012602551452 8.27642500032858 8.30079997176318 8.14581619763765 8.45804917094895 8.11290414505231 7.84580584280392 0.129609104093944 0.127867943654092 0.129226147251200 0.130488306900611 0.128206026640258 0.130843653952424 0.126614043099833 0.131536049016312 0.130085043533708 0.134022372230472 0.142197560226567 0.129688469200585 0.134787419400717 0.133184725458949 0.135345053708533 0.130423575031494 0.133531712848212 0.134014417493599 0.130718149594941 1 1 - 443312 444490 443905.091 443149 446235 - gene protein_coding_gene FALSE TRUE AT1G02270.1 endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein Identical to Putative uncharacterized calcium-binding protein At1g02270 [Arabidopsis Thaliana] (GB:O81916); similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54130.2); similar to Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE85174.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.181006040169131 2.06781827823559 0.0632838916140668 1 1.19204516301205 16.8882482650917 0.181006040169131 0.0546085528406093
AT1G72790_at 4.36537342348154 4.41914850468379 4.18180000664597 3.9849215023605 3.51500689703659 3.90329864904708 4.21564513490682 4.70659147086952 4.82105150699928 4.75831460906851 5.20241767116826 5.02761224718609 4.77074997862599 4.94203587676453 5.11272126575043 4.3156611811436 4.21526700697347 4.75587484579175 4.52875577815547 0.187376557324092 0.188466726978538 0.191623647544800 0.192654473804908 0.186077629064687 0.184569918055082 0.186980815250537 0.185860844288387 0.192323349806024 0.183503765794079 0.190150921644375 0.189133010955425 0.189424922014453 0.19794815662966 0.194134957089194 0.184669950820974 0.186890664513249 0.193597299712554 0.185399882918178 1 1 + 27399706 27400163 27399895.909 27398409 27400461 + gene protein_coding_gene FALSE TRUE AT1G72790.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G57070.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81528.1) -0.220173829305893 -2.06774568784779 0.0632917947526255 1 1.19193904473195 8.90922310225394 -0.220173829305893 0.113934082782105
AT3G54660_at 10.6125289534628 10.5881456793254 10.6311383368364 10.6643572388471 10.6379704183175 10.3728740153787 11.7059786583359 11.5105303667699 11.0260764511912 11.2152752429557 11.254071417556 11.2452737924284 11.2665278204818 11.2324183121093 11.3410983655745 11.3920153429383 11.4008439436428 11.4420686933389 11.2350732788392 0.0699955287903745 0.067605875800639 0.0704581272271174 0.0691013093977424 0.0685792415297576 0.0739569770110446 0.0696282961771358 0.0710150668109346 0.072410182623812 0.0691957791821491 0.0683203186594398 0.067605875800639 0.067605875800639 0.0710060931171586 0.067605875800639 0.0683992207046962 0.0693853239486295 0.067605875800639 0.0694937334412544 3 3|0 -|/ 20241499 20242286 20241717.333 20240722 20244160 - gene protein_coding_gene FALSE TRUE AT3G54660.1 GR (GLUTATHIONE REDUCTASE); glutathione-disulfide reductase Encodes glutathione reductase that is most likely localized in the chloroplast. Identical to Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRase) [Arabidopsis Thaliana] (GB:P42770); similar to ATGR1, glutathione-disulfide reductase [Arabidopsis thaliana] (TAIR:AT3G24170.2); similar to glutathione reductase [Brassica juncea] (GB:AAD28177.1); similar to glutathione reductase [Brassica juncea] (GB:AAK27157.1); similar to glutathione reductase (NADPH) [Vitis vinifera] (GB:AAB70837.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Glutathione reductase, plant; (InterPro:IPR006324); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.182364762724250 -2.06765744988644 0.0633014027428333 1 1.19181005351931 22.0807394760779 -0.182364762724250 0.057441161832624
AT1G06400_at 9.27959318736504 9.5232202689871 9.58431338093302 9.72337666988046 9.9387436743349 9.62145914887045 9.39935077767694 9.37646542595607 8.44277056723553 8.81392446206403 8.9652175987035 8.20445517712611 8.9450767398877 8.82856260581213 8.24758981399536 8.96820484104656 9.09007818111028 8.69612037728444 8.79287809198087 0.161319835559235 0.161383494664007 0.164747385906059 0.161062347141789 0.163887713913366 0.168494815624496 0.162017965079272 0.157799381617877 0.175454898066186 0.158900420648834 0.157813122641780 0.167489159406928 0.161207124908083 0.165354105346146 0.158498052267634 0.15695128743114 0.162925701628403 0.166900070377259 0.164882073741736 1 1 - 1951088 1952607 1951739.091 1950843 1952784 - gene protein_coding_gene FALSE TRUE AT1G06400.1 ARA2 (Arabidopsis Rab GTPase homolog A1a); GTP binding small GTP-binding protein (ara-2) Identical to Ras-related protein ARA-2 (ARA-2) [Arabidopsis Thaliana] (GB:P28185); similar to AtRABA1c (Arabidopsis Rab GTPase homolog A1c), GTP binding [Arabidopsis thaliana] (TAIR:AT5G45750.1); similar to Ras-related protein Rab11D (GB:Q40194); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.191143964976185 2.06760182236137 0.063307460578104 1 1.19172873515224 18.2689924203993 0.191143964976185 0.073397614532757
AT1G65610_at 1.99456313822553 1.81435228859643 2.77386403772510 2.90519359161619 1.75847297367708 1.46045545940097 1.46882031094151 1.68816565093720 1.94783327687993 1.79781640535932 1.58019666857191 1.64698185916151 2.08040469750632 1.88000344946437 1.69653724736280 1.42041735548280 1.765953355978 1.93331561263003 1.80301104180301 0.247127789692375 0.248253300792899 0.247127789692375 0.258566078310792 0.247127789692375 0.247127789692375 0.247127789692375 0.249138980139978 0.257578254525035 0.250337044677584 0.251371210879855 0.249583848287104 0.252506172940063 0.254120173202281 0.252082358656391 0.247127789692375 0.252083949313733 0.252539951176312 0.247127789692375 1 0|1 /|- 24395487 24396108 24395762.222 24395342 24399023 - gene protein_coding_gene FALSE TRUE AT1G65610.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 7 (EC 3.2.1.4) (Endo-1,4-beta glucanase 7) (KOR2) [Arabidopsis Thaliana] (GB:O04478); similar to KOR1 (KORRIGAN), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49720.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT4G24260.1); similar to Cel9A [Populus tremula x Populus tremuloides] (GB:AAT75041.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABD32918.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE92687.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) 0.191971937259317 2.06756978990826 0.063310949158798 1 1.19168190930901 3.78300085911524 0.191971937259317 0.0747648661183664
AT2G16640_at 8.0594928369568 8.52005920158127 7.46297800432552 7.25393132973723 7.90264520446476 7.77205611061623 6.81157821053442 6.92133716250919 6.35710220787276 7.05082372658539 6.0502970671826 6.98411284146962 6.65988558327202 5.99106392390688 6.26306113660902 6.93035112046492 6.27822313132606 6.38218679451184 7.20047593042753 0.229249003496034 0.222767289170475 0.216409888543991 0.219534349678165 0.224621497923346 0.226884838952727 0.215894603667983 0.218067565197773 0.231696759485877 0.215894603667983 0.218659058038716 0.215894603667983 0.224860023873666 0.229983041652801 0.225208771852898 0.222014724852696 0.232290998728985 0.225125918458554 0.215894603667983 2 2 - 7218589 7219052 7218795.182 7218194 7222635 - gene protein_coding_gene FALSE TRUE AT2G16640.1 ATTOC132/TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane receptor similar to TOC159 (translocon outer membrane complex 159) [Arabidopsis thaliana] (TAIR:AT4G02510.1); similar to ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120), GTP binding / protein translocase [Arabidopsis thaliana] (TAIR:AT3G16620.1); similar to chloroplast Toc125 [Physcomitrella patens] (GB:AAS47583.1); similar to putative chloroplast outer envelope 86-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44144.1); similar to AAA ATPase; AIG1 [Medicago truncatula] (GB:ABE87459.1); contains InterPro domain Chloroplast protein import component Toc86/159; (InterPro:IPR005690); contains InterPro domain AIG1; (InterPro:IPR006703) -0.203641889530923 -2.06736737700545 0.0633329976706516 1 1.19138602343638 14.2439422516597 -0.203641889530923 0.0923733354965597
AT3G23540_at 6.43894662796921 6.59533623201204 6.90032360759425 7.00655322589888 7.41907925972985 6.99185422695482 6.65743506809898 6.4039436464256 6.51681725372612 6.07564458180461 5.76479424515014 6.00243944645753 6.29126305462513 5.84281481997308 5.48015837072127 6.43512677784269 6.64344539106485 6.2939703304176 6.13691015251551 0.200898156980855 0.186038878439133 0.194205789293214 0.196187019617193 0.195123354658613 0.193316893403282 0.188099211728243 0.196269376355730 0.203745507893055 0.191258696926461 0.199943146255576 0.194869662704615 0.194542586123698 0.194374854633085 0.196070381002485 0.187631270196119 0.191533489103669 0.186038878439133 0.192051198296217 3 3 + 8447453 8447993 8447767.182 8443452 8448077 + gene protein_coding_gene FALSE TRUE AT3G23540.1|AT3G23540.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14290.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14290.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); similar to Os03g0359000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050149.1); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) 0.20333237246706 2.06704248450365 0.063368402814198 1 1.19091112073313 12.9703717621089 0.20333237246706 0.0919833268663527
AT1G15720_at 2.85681120120556 2.50921231744238 2.53771024612747 2.82216984839724 2.53379726245411 2.54531891065430 2.55712623469016 2.95828684184721 3.32578130656785 3.49321406031133 3.54136975459464 3.04680752041973 3.05597391629008 2.95678835516801 3.37820756597599 2.97650070538646 2.53031021577165 3.14734001997173 3.36098992479893 0.173711731772680 0.169434885488039 0.170041753921529 0.168593879000326 0.163418539964318 0.169811084817772 0.168004281887836 0.168811933462129 0.164072995762173 0.164862244392892 0.170205275266758 0.164178405665603 0.172681739609081 0.177260046342148 0.171405562581573 0.168455918033872 0.172082636624594 0.172417637595846 0.171289863488748 1 1 + 5406724 5407278 5407046.455 5406020 5407481 + gene protein_coding_gene FALSE TRUE AT1G15720.1 TRFL5 (TRF-LIKE 5); DNA binding / transcription factor Arabidopsis thaliana myb family transcription factor (At1g15720) similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G58340.1); similar to Os06g0181300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056978.1); similar to terminal acidic SANT 1 [Zea mays] (GB:AAV28560.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.212388127875067 -2.06677391524113 0.0633976842134455 1 1.19051856843796 5.90129945148063 -0.212388127875067 0.104236504296452
AT4G26260_at 0.83752481404728 1.19626912383313 0.976157012817856 1.36222421031435 0.899715875019416 1.08176181756288 0.924385533781001 0.928463608289362 1.95103621997921 1.29226549213377 0.501694655945849 1.25865468345200 0.886686936347688 1.27485511968329 0.625294998127958 0.92591615459627 1.13815119646141 0.927633732136224 1.14798721782869 0.196102465579643 0.196102465579643 0.196662753461074 0.197144042324496 0.197077427628199 0.196102465579643 0.205667800321097 0.20111642757781 0.206502813939208 0.213797648070780 0.197082501736958 0.198278560019453 0.199594351506990 0.196283542228434 0.202116889272573 0.199992909923301 0.202771901831139 0.215687784281381 0.210384359104953 4 4|0 +|/ 13298782 13299970 13299310 13297707 13300379 + gene protein_coding_gene FALSE TRUE AT4G26260.1 MIOX4 (MYO-INOSITOL OXYGENASE 4) Encodes a myo-inositol oxygenase. Identical to Inositol oxygenase 4 (EC 1.13.99.1) (Myo-inositol oxygenase 4) (AtMIOX4) (MIOX4) [Arabidopsis Thaliana] (GB:Q8H1S0;GB:Q6XGZ9;GB:Q9STQ8); similar to MIOX5 (MYO-INOSITOL OXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT5G56640.1); similar to Protein of unknown function DUF706 [Medicago truncatula] (GB:ABE91981.1); contains InterPro domain Protein of unknown function DUF706; (InterPro:IPR007828) -0.206549041556228 -2.06664172294262 0.0634121014724002 1 1.19032535766804 2.22887470507869 -0.206549041556228 0.0964929461174018
AT1G03410_at 1.66230184815380 1.4622888231852 2.30201017822712 2.22897088230242 1.77955670450116 1.53892912693227 1.95308484235321 1.67830392740313 1.99682529487319 2.49279994802623 2.77684507669788 2.18698163656556 1.76824289845950 2.34308164413569 2.47434456440409 1.97271330477042 2.67716800225260 2.73167922900201 2.28442400855337 0.197810918579667 0.200469513906844 0.201628326722242 0.202887944820835 0.199750792105382 0.199401845929379 0.199685581469042 0.210761385942611 0.21985580528841 0.205678099217683 0.200094423643541 0.206992657357576 0.206045366340392 0.205834307431657 0.197810918579667 0.199583667624684 0.201673692941326 0.204890136764416 0.198499327578884 1 1 - 844786 845310 845051.727 844435 847682 - gene protein_coding_gene FALSE TRUE AT1G03410.1 2A6 similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G03400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.190868745050973 2.06614215662805 0.0634666134583821 1 1.18959523971038 4.13788002247574 0.190868745050973 0.0731647062597685
AT4G28980_at 6.43692456497135 7.06330285865049 6.65518561214562 6.73605636480643 7.31147109746652 7.40877860223432 6.58599415900924 7.11773403299369 6.51701287989656 6.60957854024395 6.79694237969692 7.0859103888227 7.14047426061405 6.61358174478582 6.65944449644581 6.96404809999643 6.79980390730552 6.3964798866675 6.49965644670402 0.193302305464596 0.182627625092596 0.187499291785855 0.181330838380002 0.187712418576477 0.185301041764387 0.184542128175364 0.180209084743258 0.180645259840042 0.180063306528956 0.179115773426004 0.181927466816791 0.180338322519869 0.191811210464817 0.179595711649287 0.181873182164183 0.181958097152790 0.189561811499292 0.182630639466810 4 4 + 14289532 14289955 14289731.455 14288445 14290712 + gene protein_coding_gene FALSE TRUE AT4G28980.1|AT4G28980.2 CAK1AT (CDK-ACTIVATING KINASE 1AT); kinase/ protein serine/threonine kinase|CAK1AT (CDK-ACTIVATING KINASE 1AT); kinase Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription. similar to CDC2/CDC2A/CDC2AAT/CDK2/CDKA,1 (CELL DIVISION CONTROL 2), cyclin-dependent protein kinase/ kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT3G48750.1); similar to CDK-activating kinase [Euphorbia esula] (GB:AAF34804.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.245943519258679 2.06576310609656 0.0635080043809792 1 1.18904130089581 13.5890150454464 0.245943519258679 0.143865150702011
AT3G19900_at 7.97956116993469 7.82756371055379 7.8367144433012 7.7280482768446 8.58985219837429 8.1805824876951 8.60627104602615 8.69677800761194 8.17995998633796 8.15105061509504 7.87293524157062 7.70719042363773 8.0106956777363 8.15862690859191 7.61979286172907 8.33926035018957 7.73653174392538 8.01573076465086 8.05352908702413 0.155904326735345 0.161146942152347 0.157914918195664 0.161923434353494 0.163927898397867 0.159359010740498 0.167666150041317 0.166529599366803 0.161463163713957 0.161473004525320 0.157112982033273 0.158376886059312 0.160823348154741 0.156538202584733 0.155082463051487 0.153601197212003 0.162622142207464 0.163284749362365 0.162787321148829 3 3|0 -|/ 6923092 6924453 6923936.375 6922573 6925072 - gene protein_coding_gene FALSE TRUE AT3G19900.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD22944.1) -0.194664265813145 -2.06521662956936 0.0635677223643424 1 1.18824275644636 16.2110591138709 -0.194664265813145 0.0794177189835578
AT2G29650_at 11.0290696168746 11.0917456637541 11.2723528883398 11.1535828729376 11.3387397640041 11.1371328531469 11.8486974692163 11.9126216939355 11.7541869329831 11.6361397545308 11.6855105355920 11.5086503750006 11.6247652298821 11.7513159096352 11.1856161814649 11.6629920358580 11.3048601544991 11.5691694912236 11.539590729421 0.0690529901410625 0.0656507407350954 0.0696766144931932 0.0669537667289048 0.0656507407350954 0.0670749090314475 0.06968952894749 0.0676509772072171 0.0723392048012778 0.0656507407350954 0.0677231186001186 0.066812156669285 0.0676457594522533 0.0679435910534512 0.066534392358447 0.0665025924637483 0.0770990718698258 0.0657852897258857 0.066073719482664 2 2 - 12680797 12681718 12681219.273 12680460 12683126 - gene protein_coding_gene FALSE TRUE AT2G29650.1|AT2G29650.2|AT2G29650.3 inorganic phosphate transporter, putative similar to ANTR2 (anion transporter 2), organic anion transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to Na+/Pi transporter [Thellun (GB:ABK51380.1); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE91392.1); similar to Os01g0279700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042749.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701)|similar to ANTR2 (anion transporter 2), organic anion transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to Na+/Pi transporter [Thellun (GB:ABK51380.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.175888666419275 -2.06469738478526 0.0636245135144222 1 1.18748407936179 22.9379507501708 -0.175888666419275 0.0433557218463463
AT3G46270_at 0.917077019507127 0.668484599259353 1.17086042995927 0.985743933511662 0.273458747821931 0.70955684899958 0.204183375855534 0.106535637133018 0.223068822630246 0.0060971477744532 0.491267008823746 -0.00221996563172362 0.266635933665738 0.565520429083256 0.484085006263579 0.449242293656935 -0.0526232383974828 0.499900598280478 0.488865479336925 0.216209951214412 0.210031677273833 0.211346080411422 0.209259979421444 0.209259979421444 0.209259979421444 0.210165505684416 0.209259979421444 0.215701818925866 0.226986326635808 0.213692116021872 0.212876222116331 0.216136484365745 0.222901082948241 0.211132224295099 0.213253788459397 0.211431378328180 0.214900841148011 0.209259979421444 3 3 - 17012903 17012915 17012908.818 17011626 17015236 - gene protein_coding_gene FALSE TRUE AT3G46270.1 receptor protein kinase-related similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G46280.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1) 0.204608511885938 2.06449939344501 0.0636461809240415 1 1.18719481014325 0.918022486405237 0.204608511885938 0.0941173891481629
AT2G28870_at 3.49248711601526 4.01468336078408 2.92642033536181 3.49287091367048 4.08640205221524 4.40410410015455 2.81306741127529 3.48700808196753 3.70383836015224 3.18150398617039 3.66522172258489 4.47091186920413 3.39458037704516 3.53688390821167 3.88834388225953 4.05984454202495 3.58986229219871 3.38594492370866 3.47181460631799 0.209254088927511 0.197802389451199 0.208585257478114 0.211755974838385 0.213959322625175 0.207901461896481 0.204509918940026 0.199797231886176 0.212704633639661 0.201782227150867 0.204519237676789 0.202537058622964 0.202868404530297 0.202290867431763 0.206655010145314 0.198112762800772 0.211765129401778 0.208002635100258 0.199901831787246 2 2 - 12401475 12401822 12401694.818 12401333 12401992 - gene protein_coding_gene FALSE TRUE AT2G28870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59360.1) 0.286100698307242 2.06410265609649 0.0636896192490066 1 1.18661520100961 7.19029784169799 0.286100698307242 0.185474382200641
AT4G16360_at 8.02550940888354 8.0314836644237 7.8056492860438 7.92513725482359 8.29813552481397 7.92271629672468 8.47247390060959 8.27789252205618 5.9340553674363 7.26629703112688 7.12826045314989 7.35338711133929 7.34130054457416 7.14407682918917 7.08285998662655 7.40407614444241 8.14533134045115 7.16755498041842 7.04081681583945 0.194613949822055 0.194613949822055 0.198863040093368 0.194894675513155 0.194699059550779 0.199472683716519 0.196157332365170 0.194613949822055 0.215606569774145 0.199771012927520 0.205412387048809 0.195507311612448 0.203167765766576 0.204957245651453 0.201644951008142 0.198191287610581 0.218406559931048 0.201332388241887 0.204244550248559 4 4 + 9245984 9246817 9246606 9245139 9247270 + gene protein_coding_gene FALSE TRUE AT4G16360.1|AT4G16360.2 5'-AMP-activated protein kinase beta-2 subunit, putative|AMP-activated protein kinase Identical to SNF1-related protein kinase regulatory subunit beta-2 (AKIN beta2) (AKINB2) (KINB2) [Arabidopsis Thaliana] (GB:Q9SCY5;GB:O23481); similar to 5'-AMP-activated protein kinase beta-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT5G21170.1); similar to AKIN beta2 [Medicago truncatula] (GB:AAO61677.1); contains InterPro domain 5-AMP-activated protein kinase, beta subunit, complex-interacting region; (InterPro:IPR006828) 0.192434617790627 2.06405096156941 0.0636952812802212 1 1.18653968158390 15.1413308965848 0.192434617790627 0.0760485320864197
AT3G26350_at 0.97426741630516 1.10193562991505 1.11551916378059 1.18678882488842 1.48463635280216 1.34854449916571 0.981879667441947 1.21818462539354 1.46245808805803 1.55735408746184 1.67330111467151 1.64864130386403 1.65455207906577 1.59596618698336 1.31239950217698 1.48607123528104 1.84535697759094 1.94096727757652 1.47763474174502 0.216862126336769 0.215081098261844 0.217585097753041 0.227258008143388 0.215081098261844 0.220133169810036 0.223575580465342 0.21844644842618 0.223881938768125 0.217301570412924 0.215081098261844 0.220487511147010 0.217838913464952 0.229016640323215 0.217413843419662 0.216053962844040 0.21656954705385 0.223226741037406 0.215873878288270 3 3 - 9654940 9655399 9655206.091 9654897 9655967 - gene protein_coding_gene FALSE TRUE AT3G26350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13050.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB92611.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.180156681312470 2.06381104888248 0.0637215647964598 1 1.18618920774706 2.74837248849802 0.180156681312470 0.0535462459804975
AT2G20400_at 2.59724185530046 2.27210248606254 2.55615569944163 2.38277135196349 2.69464008223509 2.57996805689806 2.35690043177411 2.19092217194724 1.70603294495016 1.46572386887009 1.36076715374385 1.86014544841527 1.89007552802772 2.05758607863675 1.73419914508329 1.89148325866136 2.39336904441837 1.48503794058333 1.78573291080914 0.217075485151990 0.218528090403905 0.221358431556165 0.217307839141485 0.215070497077926 0.217197624108833 0.222915631316944 0.218410822664764 0.229194340913918 0.224425573979021 0.226702729164040 0.218149010175304 0.215070497077926 0.223039148041804 0.219867049312930 0.215070497077926 0.218686683114797 0.217062358105219 0.223773971029338 2 2 + 8807135 8808649 8807568.091 8806268 8809054 + gene protein_coding_gene FALSE TRUE AT2G20400.1 myb family transcription factor similar to PHR1 (PHOSPHATE STARVATION RESPONSE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT4G28610.1); similar to CDPK substrate protein 1; CSP1 [Mesembryanthemum crystallinum] (GB:AAF32350.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.190339218091629 2.06343345927781 0.063762952129593 1 1.18563764162589 4.19712752923918 0.190339218091629 0.072698655122682
AT1G14420_at 1.66780917184621 1.26637166438888 1.63920873955286 1.68761938887670 1.46477817832670 1.36237007224923 1.52546468279109 1.88585222706090 2.77573705150896 1.66616796021552 1.5896408752974 1.20957608347672 2.31122200401621 1.22200607036210 1.75919376324075 1.34702394253901 1.63883011155274 1.65840020906947 1.42277415612983 0.194054352717239 0.191823143459774 0.190471807796350 0.199069605099445 0.199394692280343 0.204608582088731 0.196259921897596 0.198692577653744 0.201186379738103 0.197486155087176 0.193171069298867 0.195283896332528 0.196417741825477 0.197295574966240 0.191349845707052 0.197063295549719 0.192667791320751 0.196506174151668 0.197939467703596 1 1 - 4931850 4932462 4932183.455 4931561 4933510 - gene protein_coding_gene FALSE TRUE AT1G14420.1 AT59 (Arabidopsis homolog of tomato LAT59); lyase/ pectate lyase Identical to Probable pectate lyase 3 precursor (EC 4.2.2.2) (Pectate lyase A2) (AT59) [Arabidopsis Thaliana] (GB:Q9M9S2;GB:O23665); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT2G02720.1); similar to Probable pectate lyase P59 precursor (GB:P15722); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectate lyase, N-terminal; (InterPro:IPR007524); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.205393382638769 -2.06309865151337 0.0637996713495844 1 1.18514860159779 3.33587410983444 -0.205393382638769 0.0953941392792753
AT1G78240_at 9.18120259661914 8.99240797171675 8.57784937820377 8.51772639528682 8.79944299170953 8.8945873023086 8.19904222800302 8.64320607078284 8.27332172382783 8.40303345655474 9.05647093417421 8.95692050188698 8.9030829759171 8.81832115070076 8.85810402335843 9.09491743688577 8.64259183528876 8.31500694901005 8.45507814222722 0.130609973750222 0.130050774090571 0.128718198473165 0.131449392647635 0.137742715741002 0.134453036256087 0.136658076111960 0.130125173108381 0.133270605482387 0.138725912175723 0.126610665149112 0.132710219852736 0.130250178676473 0.128823691409741 0.137276710400653 0.122687698059375 0.140171986210599 0.138755130662022 0.131036534793088 1 1 - 29438088 29438741 29438512.455 29437722 29441377 - gene protein_coding_gene FALSE TRUE AT1G78240.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G13860.3); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G03480.1); similar to Os02g0755000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048160.1); similar to Putative methyltransferase, putative [Medicago truncatula] (GB:ABE90949.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) 0.198484667564784 2.06153461316651 0.0639714673521289 1 1.18286447705315 17.3295938252151 0.198484667564784 0.0857611393275022
AT3G59760_at 8.33421719897733 8.50890237924749 7.98035944451186 7.9778167854052 7.6108963681817 7.64191885395064 8.08214449822828 8.31493331880573 6.62425974386713 7.59900868075447 8.15786087446216 8.43715869020727 7.79102434309221 8.1029559263332 8.42420766423954 7.9758090874184 7.80071733049025 8.18834189238366 7.51232749706527 0.13929501232692 0.139631402116957 0.137413152880433 0.142487786774231 0.137413152880433 0.139989285577263 0.138977569619683 0.139841321346932 0.15440996530665 0.141803856458226 0.140930740109297 0.137463792451779 0.144844168410927 0.143841565138571 0.144582011496648 0.139045096342807 0.142538557529119 0.144153179982333 0.151089969945419 3 3 - 22083672 22085158 22084411 22082925 22086393 - gene protein_coding_gene FALSE TRUE AT3G59760.1|AT3G59760.2|AT3G59760.3 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); cysteine synthase Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC Identical to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C) (OASC) [Arabidopsis Thaliana] (GB:Q43725;GB:Q8L4A2;GB:Q9M1Z8;GB:Q9M440); similar to OASB (CYSTEINE SYNTHASE 1), cysteine synthase [Arabidopsis thaliana] (TAIR:AT2G43750.1); similar to plastidic cysteine synthase 1 [Solanum tuberosum] (GB:BAB20862.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) 0.178629674856844 2.06136083895366 0.0639905818012161 1 1.18261073782388 15.7338776642338 0.178629674856844 0.05065343028088
AT1G12840_at 10.5424756149661 10.6072911400727 10.6547389202807 10.7666158665366 10.7996059443423 10.4060492342349 10.9488717545883 10.922441709728 9.99540321745926 10.2073594889267 10.6684068215836 10.5395601322599 10.6622484515158 10.6504811800791 10.7091578102949 10.6084616822399 10.5457372907108 10.4838234265282 10.1894133962933 0.0790839742649179 0.0769592282243777 0.0796969633083061 0.0791319586496645 0.0794342869315693 0.0812443854119379 0.0799393626799551 0.0775867953534377 0.0972964004504939 0.0811372073241725 0.0791645846238163 0.0787453140795811 0.0769592282243777 0.0806206641452413 0.0794275591922975 0.0769592282243777 0.0830683599616974 0.0834294451042635 0.0817222708928846 1 1|0 +|/ 4376851 4378177 4377456.111 4375513 4378512 + gene protein_coding_gene FALSE TRUE AT1G12840.1 DET3 (DE-ETIOLATED 3) Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8. Identical to Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit) (VATC) [Arabidopsis Thaliana] (GB:Q9SDS7); similar to vacuolar H+-ATPase subunit C [Gossypium hirsutum] (GB:ABH07428.1); contains InterPro domain ATPase, V1 complex, subunit C; (InterPro:IPR004907) 0.189620834175823 2.06121788345602 0.0640063103497 1 1.18240200518703 21.0756162565743 0.189620834175823 0.071833933005379
AT1G05800_at 1.01280133080948 1.0181766040802 0.88150727130251 0.693632739246277 0.925968646032706 0.834685353545034 0.717415969643352 0.77905253523901 1.10699014216381 0.68756070424506 0.816914695072328 0.880861069051477 0.970301074555096 0.94080520681045 0.183636149186899 0.780881794791838 0.650862249850681 0.911265883542737 1.40377113497656 0.201819545895643 0.198581644269799 0.198581644269799 0.203304900217003 0.206668807527020 0.200444438575842 0.20143658104427 0.198581644269799 0.199773150635758 0.20562642181792 0.206025012807195 0.205620790226895 0.206313993850266 0.209889563868988 0.200794552408902 0.200877901264719 0.204315155607227 0.207344934037848 0.199207707248342 1 1 + 1742060 1742559 1742342.545 1741203 1742618 + gene protein_coding_gene FALSE TRUE AT1G05800.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G31690.1); similar to Lipase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96672.1); similar to Os11g0299300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067729.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.173539709591083 -2.06119870909281 0.0640084202683885 1 1.18237400867679 1.77442922748040 -0.173539709591083 0.0376994884620352
AT3G05660_at 4.13781510237959 3.90226065979258 2.71331816291428 2.44914229830476 2.41110178352146 2.42810510790467 2.48022796721913 2.10119987713420 2.16678069526894 2.25433174964450 2.31105495603805 2.48305431936126 2.70525945944411 2.30294030070154 2.37026277314071 2.93071453945146 2.11449153454056 2.45701641797620 2.1990348534252 0.243602907149584 0.244445603819144 0.23430501481969 0.220917027717623 0.225457961137311 0.220861179060160 0.219996705236807 0.220919746282538 0.23190792865167 0.225979774219755 0.224211196908102 0.228233101938057 0.223616484594269 0.222614107320119 0.222482002591766 0.224477863157877 0.229965535263330 0.221950836435370 0.226206732880751 3 3 - 1649459 1649924 1649628.6 1648849 1652007 - gene protein_coding_gene FALSE TRUE AT3G05660.1 kinase/ protein binding similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G05650.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G11010.1); similar to Cf-2.2 [Lycopersicon pimpinellifolium] (GB:AAC15780.1); similar to Cf-2.3 [Lycopersicon pimpinellifolium] (GB:AAX19021.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.201162771000611 -2.06063116749605 0.0640709013722806 1 1.18154538575216 5.16092889674364 -0.201162771000611 0.0897928921017854
AT2G47010_at 1.16330119915008 0.922166518919258 1.18476368238923 0.541088434402887 0.845292036810637 0.550778615772701 1.15588352443174 0.891746231422215 1.64306659870113 1.32316363349834 0.93254680125799 1.24733456800694 1.31882729100102 1.59160363223545 1.2589120125861 0.971538544000916 1.43384675187194 1.44832090181581 1.53740673234054 0.211328071680391 0.216873001631264 0.217573639553885 0.211328071680391 0.211328071680391 0.217051944113521 0.215425099482417 0.212813324810048 0.216535683812845 0.21656029465053 0.217006642131236 0.211328071680391 0.216260682455484 0.222130245918138 0.211328071680391 0.212692491470757 0.213113943509396 0.216120716993309 0.216896603761369 2 2|0 +|/ 19325393 19326084 19325827.8 19324195 19326467 + gene protein_coding_gene FALSE TRUE AT2G47010.1|AT2G47010.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17030.1); similar to hypothetical protein MtrDRAFT_AC136840g22v1 [Medicago truncatula] (GB:ABE82418.1) -0.239319842401639 -2.06046176403759 0.0640895622580013 1 1.18129807002577 2.29516684759252 -0.239319842401639 0.137245596767529
AT1G61260_at 5.05528922892498 4.60900393617719 5.0367964630198 5.15041113545009 4.31535129377312 4.27163798100663 4.42691375668780 4.15595793023186 4.83389970638491 4.20486885993559 4.65891679472488 5.09411545706395 4.35609036572615 5.02320199172525 4.7244660735421 4.5889430351418 4.49457996453377 4.67662090404241 4.24382848577215 0.203145815647251 0.206737334420358 0.219203610702081 0.209375300789219 0.20391129564942 0.219591981088907 0.213789350795956 0.206924251839573 0.203083445497099 0.201074039707752 0.201339145213733 0.197574415598680 0.205359072715058 0.197574415598680 0.205158836273703 0.199112237129774 0.225628852770081 0.201056061411567 0.200265140054541 1 1 - 22597502 22598166 22597815.818 22597130 22598734 - gene protein_coding_gene FALSE TRUE AT1G61260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11220.1); similar to cotton fiber expressed protein 1 [Gossypium hirsutum] (GB:AAC33276.1); contains InterPro domain Protein of unknown function DUF761, plant; (InterPro:IPR008480) 0.203171238960970 2.05968845525315 0.0641748122272753 1 1.18016919914340 9.19249480266398 0.203171238960970 0.09277517984319
AT1G77280_at 5.21525710109207 5.56976380199348 5.41915286206602 5.24601497615424 4.66240103835208 4.73549853469187 5.47106513525315 5.76868081943038 2.85540286270263 3.94588175493549 3.52416268813087 4.01065046686683 3.83626239455255 3.72419891161255 3.29443566696993 4.1567358293555 4.53893553114564 3.12649285683846 4.24948754553029 0.233887136226642 0.223621661946007 0.223689867404752 0.220281534335087 0.221172895415268 0.233174357089285 0.225664009445377 0.234853918943154 0.241656002362912 0.223540095878346 0.228711427599470 0.233101161254876 0.229400415254236 0.230721708982224 0.228455738251504 0.228242860717352 0.228946913330508 0.222960397237853 0.228810301697854 1 1 - 29036369 29037009 29036643.2 29036362 29040776 - gene protein_coding_gene FALSE TRUE AT1G77280.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G21590.1); similar to At5g63940 [Oryza sativa (japonica cultivar-group)] (GB:AAX96058.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91867.2); similar to Os11g0194900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067422.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.198765644749157 -2.05959361741543 0.0641852745462655 1 1.18003076671626 8.99101679074925 -0.198765644749157 0.0864528981457714
AT1G07170_at 7.9659047486812 8.26718835178725 8.19614279704104 8.26068954615467 8.60993182234099 8.69769023616796 6.94501637817003 7.02875527912088 7.92851320594003 7.54630596435324 7.35915770943104 6.91833162633606 7.11719863497444 7.47617034473385 6.77657805436197 7.43117407219547 7.37267309225722 7.41626917065285 7.80436287740511 0.208727154492448 0.200822588817044 0.202837059262586 0.207332334985441 0.195514637211840 0.209167544758903 0.195514637211840 0.197579272263883 0.208577323564939 0.208512460491120 0.1998162489548 0.204295385586650 0.200984018674481 0.204659535184733 0.196932142790218 0.199445937178736 0.212491280346204 0.200967422999298 0.201968767894851 1 1 + 2200685 2200962 2200818.818 2200133 2201145 + gene protein_coding_gene FALSE TRUE AT1G07170.1|AT1G07170.2 Identical to Hypothetical protein At1g07170/At2g30000 [Arabidopsis Thaliana] (GB:O80873); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30000.1); similar to Os04g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054163.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_799069.1); contains InterPro domain PHF5-like; (InterPro:IPR005345) 0.181557074935697 2.05926114067219 0.0642219653926 1 1.17954547804263 15.4930006136083 0.181557074935697 0.0573048341632018
AT4G36770_at 2.03116595356307 2.43834623814638 2.02174836271749 1.64152593686941 1.61963436694762 1.67903864473714 2.02246567718788 1.93224970858745 2.00726949266785 2.10415390216192 2.29319151718834 2.25991470984922 2.55156703622955 2.35207141548490 2.01105186333863 1.83152652885450 1.88594124991455 2.36950275931662 2.61725095124136 0.208042270616872 0.205637813982398 0.199066896574169 0.203361690187974 0.199034216909732 0.204244079281529 0.21092061272092 0.200426241896514 0.205429252815928 0.206131721353062 0.210753980309930 0.199034216909732 0.208356708589865 0.201132686850007 0.205138724911800 0.205429520806369 0.211836966660539 0.205757555243378 0.199034216909732 4 4 - 17330243 17330751 17330576.182 17330152 17331630 - gene protein_coding_gene FALSE TRUE AT4G36770.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UGT72E1 (UDP-glucosyl transferase 72E1), UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G50740.1); similar to Anthocyanidin 3-O-glucosyltransferase (Flavonol 3-O-glucosyltransferase 5) (UDP-glucose flavonoid 3-O-glucosyltransferase 5) (GB:Q40287); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.207057815110807 -2.05914129113206 0.064235196364477 1 1.17937055100945 4.14189052795076 -0.207057815110807 0.0982049258424858
AT4G31300_at 10.3773718683442 10.5482288009408 10.8459276336926 10.6881084217523 10.6207972961235 10.6784417789863 10.3952650304235 10.4613631623286 10.3288751103727 10.1590806774679 10.2441761080255 10.1182094016572 10.3555515478460 10.2357229623551 10.2884896317707 10.1931855702701 9.90917869231876 10.3607824880686 9.88818901400323 0.0805322741641074 0.0777986492886481 0.083125212072489 0.0842030665634232 0.0793246209086871 0.0812128807536849 0.0805674026070962 0.0783837947484555 0.0800857559202445 0.084884084677619 0.0820427240396854 0.081873569950503 0.0811504511384709 0.0812417660915298 0.081963013838174 0.0776361575901253 0.0974601024382607 0.0805933364872392 0.0856558322189974 4 4|0 +|/ 15189256 15190898 15190086.25 15188769 15191159 + gene protein_coding_gene FALSE TRUE AT4G31300.1|AT4G31300.2 PBA1 (20S proteasome beta subunit A 1); peptidase Encodes 20S proteasome subunit PBA1 (PBA1). Identical to Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) (PBA1) [Arabidopsis Thaliana] (GB:Q8LD27;GB:O23716); similar to PBB2 (20S proteasome beta subunit B 2), peptidase [Arabidopsis thaliana] (TAIR:AT5G40580.2); similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) (GB:P93395); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353)|Identical to Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) (PBA1) [Arabidopsis Thaliana] (GB:Q8LD27;GB:O23716); similar to PBE1 (20S proteasome beta subunit E1), peptidase [Arabidopsis thaliana] (TAIR:AT1G13060.1); similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) (GB:P93395); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.175271008401892 2.05897081510640 0.0642540207446897 1 1.17912173856119 20.7462098245258 0.175271008401892 0.0430175204124768
AT2G33250_at 8.4679872227498 8.79182513746647 8.83266985064538 8.87678669458582 8.88484412096277 9.12550682376646 8.97714509736254 9.44199425465652 9.46571791416043 9.73377114448827 9.22734035193803 9.01575541327014 9.25577729209222 9.4329359097118 8.86217385065234 9.72144809411023 9.39001156276744 9.16324445607786 9.88781997959413 0.133893875402372 0.127813564995911 0.140135782933931 0.129354624421458 0.132771210558540 0.140590777554195 0.140767420535585 0.131855590188639 0.146777179375588 0.126393237611280 0.129542629064802 0.129994272729135 0.131409569329625 0.128603548391552 0.14260992727441 0.127822692436333 0.143255526420588 0.132289161700112 0.128657885801881 2 2 + 14104871 14105707 14105418.636 14104509 14105788 + gene protein_coding_gene FALSE TRUE AT2G33250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04310.1); similar to Os01g0680600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043873.1) -0.213484934327746 -2.05820885691635 0.0643382215229685 1 1.17800974537926 18.4020226731454 -0.213484934327746 0.106793176701724
AT1G68490_at 9.31279435885948 10.3464378578206 9.82592812494847 10.1268934733497 10.2469060126607 10.122909099058 9.96496847022783 10.3599457094607 9.65398713062713 9.94521395660707 10.4697610767312 10.6080034489518 10.5742560548640 10.4275827722534 9.91163281908382 10.4609681099462 10.4659952685494 9.71262395276547 9.84285658076114 0.112977030783318 0.112489431269708 0.120022207414736 0.118511475439055 0.112429328243301 0.118744677648277 0.110728719267263 0.112351193888617 0.121971573097721 0.115087196987363 0.115020264852372 0.110402649455612 0.117032611436016 0.114219759936240 0.113303577935732 0.111465338196707 0.127532453788465 0.121545625658312 0.114536360725949 1 1|0 +|/ 25697591 25698423 25697941 25697112 25699139 + gene protein_coding_gene FALSE TRUE AT1G68490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13390.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96883.1) 0.299728146820052 2.05793833388563 0.0643681408529763 1 1.17761498520465 20.1097839685773 0.299728146820052 0.199604979015491
AT4G02150_at 5.65440228540749 6.11933619658515 5.50718903533581 5.76857714701404 6.0365011185882 5.98268610062237 5.01117079869336 5.60248701220284 4.77451007298438 4.80618438469912 4.943886590578 5.64039285452047 4.61514823692206 4.99701157362652 5.32459333979434 5.13540986035052 4.84554140583019 5.62910690472865 5.08601992737619 0.244131549659261 0.242762964851777 0.254997216128448 0.245419458355962 0.239201953507231 0.246037630861931 0.238870097169037 0.241282798569923 0.251089420033249 0.253522770669817 0.244429721132649 0.240415593528211 0.250262011147681 0.247928016501313 0.245626791275782 0.238630271215136 0.2601006833363 0.246538987588294 0.243667404069432 4 4 - 950888 951427 951103.636 950611 953690 - gene protein_coding_gene FALSE TRUE AT4G02150.1 ATIMPALPHA3/MOS6; protein transporter Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Identical to Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (KAP alpha) (KAP2) [Arabidopsis Thaliana] (GB:O04294;GB:O04255;GB:Q94F55); similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to importin alpha-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G02690.1); similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to Importin subunit alpha (Karyopherin subunit alpha) (KAP alpha) (GB:O22478); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.23968541397092 2.05684934395564 0.0644887135623616 1 1.17602608096295 10.7254392822130 0.23968541397092 0.138123014530287
AT1G72340_at 7.65176871703662 7.873884427347 7.16643697047069 7.12773648247935 7.71789338100338 7.50243296017302 6.85805925112595 7.3041169354472 7.08538407728057 7.14012044584504 6.90069640812098 7.04022313075448 6.25914236947177 6.71548318088957 6.6003816323656 6.7945850206652 6.43571152597915 6.59857089619679 6.87210406747699 0.219742596919032 0.209917734671805 0.223785387774805 0.22550555678836 0.215467584521128 0.214293247929166 0.230331556872787 0.213040770501659 0.223887587901989 0.217849597243478 0.216323435799374 0.209841262047536 0.226598285157839 0.234688965246278 0.217864968120895 0.214268783558010 0.229312230849319 0.215608035019035 0.228867646107956 1 1 + 27241369 27242120 27241825.636 27240537 27242274 + gene protein_coding_gene FALSE TRUE AT1G72340.1 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G53880.1); similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G53900.1); similar to Initiation factor 2 subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98593.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) -0.203884655259839 -2.056687657361 0.0645066335756171 1 1.17579019775525 14.2506088743469 -0.203884655259839 0.0941874975541167
AT1G49240_at 10.0847170592719 10.1148006363604 9.46094953146201 9.60596841816493 10.3792627833679 10.2740031266999 9.67807693987168 9.981714782194 10.3373935261226 9.84345444653673 10.0408172293631 9.9711793302017 10.0297829681341 9.86678223318907 9.72222900157668 9.60072571530187 9.47687593099822 9.76368338339296 10.2416951705175 0.105849459432236 0.104105528110240 0.105886385175786 0.104158508962461 0.106288357230221 0.114292769466024 0.104384049468233 0.106480983005077 0.112189786307796 0.100935285692017 0.102478104416705 0.103054271351172 0.100292229439014 0.110128214663586 0.105948555674858 0.108092893091537 0.102042780541711 0.102158396216104 0.100940238033380 1 1 + 18221018 18221576 18221201 18219540 18221981 + gene protein_coding_gene FALSE TRUE AT1G49240.1 ACT8 (ACTIN 8); structural constituent of cytoskeleton Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen. Identical to Actin-2 (ACT2) [Arabidopsis Thaliana] (GB:Q96292;GB:Q42056); Identical to Actin-8 (ACT8) [Arabidopsis Thaliana] (GB:Q96293;GB:Q41933;GB:Q9M9C2); similar to ACT2 (ACTIN 2), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G18780.2); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin 8 (GB:AAC49523.1); similar to actin [Brassica oleracea] (GB:AAD02328.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.183309814936682 -2.05660472622439 0.0645158267992623 1 1.17566921299295 19.9223652538801 -0.183309814936682 0.0612356889704321
AT2G40400_at 5.94040566255284 6.4838805368803 6.83209062841281 6.80813227919701 7.00683490505117 5.50907557106644 9.14815789660877 8.70757022734488 7.24937852327678 8.18132412208603 8.02633473538437 8.83843795773626 7.95919705460316 8.07400936180782 8.59349115747291 7.93106025938127 7.51539900461208 6.9880836257963 7.81058111922338 0.276872091313062 0.271235101253790 0.282055635770063 0.267617832708869 0.269419828654169 0.28496263668682 0.271370637053406 0.270607625989316 0.285396043631456 0.275554190801904 0.270645429353090 0.267617832708869 0.272645637009005 0.296292133801979 0.271190662048104 0.272577357337116 0.282852640747379 0.279211593342187 0.28274795962538 2 2|0 +|/ 16878781 16879576 16879079.7 16876412 16880336 + gene protein_coding_gene FALSE TRUE AT2G40400.1|AT2G40400.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56140.1); similar to Trimeric LpxA-like [Medicago truncatula] (GB:ABE84885.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44243.1); similar to Os01g0826900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044677.1); contains InterPro domain Protein of unknown function DUF399; (InterPro:IPR007314) -0.393656589255484 -2.05605407378082 0.0645768999407565 1 1.17486593690466 14.9234415797866 -0.393656589255484 0.286108060566147
AT3G62720_at 4.79334688544261 5.08316236085416 4.38779955435774 4.01786862447186 4.47275886306554 4.87075194176415 5.1861041036291 5.15004251429504 6.40896615171236 4.60390148773083 6.8123222996352 5.68341580655677 5.76378909159027 5.98648301318561 5.72336774045895 4.94381048204818 4.43451281063486 5.29944277428365 5.16148504446361 0.243027113352524 0.242703887733069 0.24505923817942 0.238675473161701 0.240150014607739 0.242763065106282 0.238675473161701 0.241324840777390 0.244501212632118 0.241289390611562 0.246612648700080 0.241692690055576 0.238675473161701 0.243087552859531 0.238675473161701 0.238858619958048 0.248073398395607 0.243951734311377 0.242284642657065 3 3 + 23213109 23213655 23213441.545 23212093 23213889 + gene protein_coding_gene FALSE TRUE AT3G62720.1|AT3G62720.2 ATXT1; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups|ATXT1; transferase/ transferase, transferring glycosyl groups Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. Identical to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1) (XT1) [Arabidopsis Thaliana] (GB:Q9LZJ3); similar to ATXT2, UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G02500.1); similar to alpha-1,6-xylosyltransferase [Gossypium raimondii] (GB:CAI11451.1); similar to alpha-1,6-xylosyltransferase [Vitis vinifera] (GB:CAI11449.1); similar to Glycosyltransferase 5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95475.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.213213556238410 -2.05588676868395 0.0645954666068291 1 1.17462189342820 10.2314013044524 -0.213213556238410 0.106753946591064
AT4G09130_at 0.693641950355952 0.719421598670456 0.384165433369720 0.617740498805541 0.571618010528383 0.599637760735049 0.733610372073726 0.454191040935133 1.02347849344434 1.22400301409103 0.864460787284416 0.525965499585862 0.404661709654116 0.610013276499652 0.920661077640691 0.524005258097891 0.741255185566371 0.610039480217766 0.488275039005994 0.200264607532233 0.203272185165344 0.202141254487042 0.206648429854244 0.208519083674881 0.211316653322121 0.217896401229809 0.209906520646269 0.203533853348709 0.208450670455117 0.211286332894483 0.211708024277417 0.208860704805403 0.204332544952525 0.204996182706003 0.203810855445490 0.211891210429335 0.211341790111725 0.209620519563 4 4 + 5816323 5816810 5816584.091 5815846 5816919 + gene protein_coding_gene FALSE TRUE AT4G09130.1 zinc finger (C3HC4-type RING finger) family protein Identical to Putative RING-H2 finger protein ATL4D precursor (ATL4D) [Arabidopsis Thaliana] (GB:Q9M0R4); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G09120.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD32383.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.184355939588961 -2.05574433260576 0.0646112773945198 1 1.17441413176212 1.37777914976698 -0.184355939588961 0.063367828335091
AT1G80630_at 4.34189687540768 4.83131723142519 4.05545866259154 4.3963694811849 4.86544433195901 4.93338220752739 4.55372814746521 4.77792682184868 4.74891158343172 4.77540846502331 4.65943153728531 4.37456110865125 4.19830558183799 4.67615617323311 4.16355165533947 4.68578263633698 4.06498354853489 3.9906894596628 4.63873996535117 0.205950470267217 0.205256345770364 0.201306040052902 0.205366394626968 0.207802427274273 0.214438975102741 0.201306040052902 0.201306040052902 0.208490886218592 0.204334926669797 0.202211245087205 0.203951278544824 0.201306040052902 0.202378282966484 0.205353931722467 0.201306040052902 0.217908957799889 0.217916812530082 0.204317488635501 1 1 - 30313810 30314311 30314004.364 30313588 30315548 - gene protein_coding_gene FALSE TRUE AT1G80630.1 leucine-rich repeat family protein similar to F-box family protein (FBL4) [Arabidopsis thaliana] (TAIR:AT4G15475.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE87204.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) -0.216445445106411 -2.05563141384793 0.0646238142678966 1 1.17424942891826 9.13079182853235 -0.216445445106411 0.110894567091278
AT1G50590_at 1.58062953511356 2.20263605758865 2.19330690352089 2.14957543888024 2.25702533910710 2.04280437408187 2.67781503982822 2.39568116541603 2.96945149661310 2.95724558271542 2.6067201864874 3.04577314043564 2.46705621367204 2.50293117469797 2.59332756154723 2.38863773999612 2.3583022567693 2.41665539627595 2.91882821306201 0.193659546085885 0.198566157420811 0.194881721402741 0.19934437059545 0.194113081601165 0.194934506042410 0.192899630867920 0.206835716941483 0.196071182880034 0.208837197277459 0.192501518645781 0.192875510706108 0.200490424987230 0.198952013823201 0.192442679983172 0.192442679983172 0.205117019235028 0.199958724205143 0.195085130414144 1 1 - 18736160 18736724 18736368.182 18736046 18737721 - gene protein_coding_gene FALSE TRUE AT1G50590.1 pirin, putative Identical to Putative pirin-like protein At1g50590 [Arabidopsis Thaliana] (GB:Q9LPS9;GB:Q9C6P9); similar to pirin, putative [Arabidopsis thaliana] (TAIR:AT2G43120.1); similar to Os03g0845000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051876.1); similar to Pirin, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99862.1); similar to Os09g0484800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063515.1); contains InterPro domain Pirin, C-terminal; (InterPro:IPR008778); contains InterPro domain Pirin, N-terminal; (InterPro:IPR003829); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Pirin; (InterPro:IPR012093) -0.227297703825362 -2.05549689391910 0.0646387524119527 1 1.17405322325015 4.93540117645809 -0.227297703825362 0.124105015274007
AT1G66980_at 8.83584089558711 8.74441104361878 8.65290494777962 8.49217018394769 8.84888648969349 8.442710801209 8.29940494287372 8.10211077650208 8.13628669833887 7.79687745606515 8.3567048603195 8.62675649001363 7.70190049724923 8.35091840593488 8.31140898873643 8.25963826174105 8.09970599823158 8.12983657944488 7.91474521291606 0.145817875965037 0.14415091953682 0.143013467609427 0.150708388761303 0.14047364356067 0.146464174673256 0.141145957694529 0.140129419711330 0.150565450217712 0.149367022637072 0.144383435781614 0.138946080816389 0.153557557823967 0.141481142393226 0.139466734442098 0.139005951654263 0.149194364209392 0.144334893305985 0.142639531368454 1 1 - 25001154 25001605 25001425.545 25000972 25005624 - gene protein_coding_gene FALSE TRUE AT1G66980.1 protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66970.1); similar to MRH5/SHV3 (morphogenesis of root hair 5), glycerophosphodiester phosphodiesterase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26690.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); similar to B0806H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67272.1); similar to Os04g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053060.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.197015914390451 2.05544610319846 0.0646443934553764 1 1.17397914311928 16.6417609514759 0.197015914390451 0.0844426540734305
AT4G20370_at 2.55419863400466 2.68767814877045 3.27655871565981 3.72602056913202 2.89797567016423 2.74071601269597 2.87073650512574 2.70371453511402 2.17694410116956 2.89402491061992 2.37896424402169 2.31319894637149 2.62074290731056 2.51872979732928 2.37402356118190 2.66877123117266 2.58010915977255 2.45308041101298 2.55724422118924 0.234075015781589 0.228682341613159 0.244213576161427 0.248489451154807 0.242981382083984 0.240952235858772 0.229671499385033 0.233118020215782 0.23340363360618 0.241013145732023 0.240174968613081 0.233136314183347 0.249478917106731 0.235928729693169 0.232742741222129 0.2311915921722 0.22910955309443 0.234164297104698 0.228682341613159 4 4 - 11001082 11002940 11001894.182 11000782 11003007 - gene protein_coding_gene FALSE TRUE AT4G20370.1 TSF (TWIN SISTER OF FT); phosphatidylethanolamine binding Encodes a floral inducer that is a homolog of FT. Plants overexpressing this gene flower earlier than Col. Loss-of-function mutations flower later in short days. TSF and FT play overlapping roles in the promotion of flowering, with FT playing the dominant role.TSF sequences show extensive variation in different accessions and may contribute to quantitative variation in flowering time in these accessions. TSF has a complex pattern of spatial expression; it is expressed mainly in phloem and expression is regulated by daylength and vernalization. Identical to Protein TWIN SISTER of FT (TFL1-like protein) (TSF) [Arabidopsis Thaliana] (GB:Q9S7R5); similar to FT (FLOWERING LOCUS T) [Arabidopsis thaliana] (TAIR:AT1G65480.1); similar to flowering locus T-like protein [Vitis vinifera] (GB:ABF56526.1); contains InterPro domain Phosphatidylethanolamine-binding protein; (InterPro:IPR001858); contains InterPro domain PEBP; (InterPro:IPR008914) 0.200975287052343 2.05487641051073 0.0647076978034997 1 1.17314827383113 5.4477949871323 0.200975287052343 0.0903305025974032
AT3G20850_at 0.885794406728862 0.847805135048773 0.974070156086387 0.942609988545093 0.572597155157626 0.885267997666547 0.889125206741242 1.12051941681730 1.28154580160937 1.48529343143033 1.10081594549764 0.97808332349498 1.67342878518809 0.972240909269719 1.21197005599063 1.09961201707493 1.23856244847830 1.12532418545672 1.60189395599306 0.184548674565438 0.193976901898131 0.190175530020464 0.188119987253554 0.194136569893543 0.192048348888605 0.186124476183083 0.188862309024015 0.192277263626457 0.182468040830727 0.192776259239880 0.190293665441151 0.182574978549186 0.188445482330566 0.182765788258347 0.188400734974154 0.187331171478062 0.205786969977666 0.191441461064394 3 3 + 7304167 7304536 7304319.364 7304163 7304567 + gene protein_coding_gene FALSE TRUE AT3G20850.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G26080.1); similar to Extensin precursor (GB:P06599); contains domain PRICHEXTENSN (PR01217) -0.186707202254005 -2.05450441903285 0.0647490650315147 1 1.17260579021538 2.20534823542429 -0.186707202254005 0.0678540392328035
AT3G57650_at 8.95313640854677 8.98694590684317 8.71658743949798 8.92315490991906 8.86199051470747 8.82809303254346 8.90326227932037 9.04863179750316 8.11506930237558 8.12754753733157 7.88296992526096 8.30970439756782 7.94372890498099 7.96562672305117 7.62972684504693 7.837373194373 7.64081209587243 8.14075349421348 8.14490623383501 0.138614807692812 0.135534421604556 0.143082490565673 0.141508853803970 0.135173688172783 0.136012372234133 0.14247407459389 0.136081455040452 0.140602595583917 0.145978324275129 0.134781303592850 0.135808595363342 0.147151922250814 0.137426742189732 0.152000811249139 0.134781303592850 0.145386494654726 0.137127699003059 0.137819578967253 3 3|0 +|/ 21362566 21363698 21363337.5 21360484 21364151 + gene protein_coding_gene FALSE TRUE AT3G57650.1 LPAT2 (Lysophosphatidyl acyltransferase 2); 1-acylglycerol-3-phosphate O-acyltransferase Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity. Identical to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 2) (LPAT2) [Arabidopsis Thaliana] (GB:Q8LG50;GB:Q9SVX9); similar to LPAT3 (Lysophosphatidyl acyltransferase 3), 1-acylglycerol-3-phosphate O-acyltransferase [Arabidopsis thaliana] (TAIR:AT1G51260.1); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (Lysophosphatidyl acyltransferase 2) (GB:Q6IWY1); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (Lysophosphatidyl acyltransferase 2) (GB:Q9XFW4); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.175437517093957 -2.05422208766638 0.0647804782338782 1 1.17219408530388 16.9267309388068 -0.175437517093957 0.0444903778348586
AT3G58060_at 2.21917881849822 2.9592908632898 2.61762492884091 2.99704017084453 2.19804019649237 2.78543637510466 2.81203825863399 2.94885410296281 2.81097817137006 3.25741768494891 2.36522050638168 2.42315142401919 2.27453686271748 2.70054652862075 2.78643597273793 2.00750679132833 3.05704804903909 2.59395666772412 2.91594397486499 0.203573032547958 0.202875443125628 0.199844978106109 0.206475777713469 0.20083449660213 0.212895400222739 0.20461700556682 0.204106004753257 0.209596572647960 0.209617935808108 0.209850170007296 0.208343847476586 0.199844978106109 0.202915766594576 0.203136010234297 0.213252240600515 0.204653894232988 0.209461816671183 0.206256972562257 3 3 - 21508785 21509663 21509330 21508755 21510653 - gene protein_coding_gene FALSE TRUE AT3G58060.1 cation efflux family protein / metal tolerance protein, putative (MTPc3) similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G16310.1); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT2G39450.1); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G79520.1); similar to Cation efflux protein [Medicago truncatula] (GB:ABE77706.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.277017343216252 -2.05418250057294 0.0647848839821154 1 1.17213635984628 5.45260311135794 -0.277017343216252 0.177789948204530
AT3G49640_at 3.96101438318728 3.67869802286423 3.41851407806923 3.36941886375845 4.59382066589251 3.98435268241524 4.46911161086817 4.46430126861411 4.14963520267104 3.93309530943772 4.04346138449976 4.2437481485252 4.07392618664216 3.97116144751219 4.09653886668254 3.99055151030496 3.33152133655333 4.06804983816462 4.26922367825516 0.242092866568495 0.231520133926648 0.243243684118368 0.232954958313074 0.240437898782554 0.244272642243712 0.250262065445220 0.233593175206630 0.240490235745869 0.231520133926648 0.240424742450085 0.231520133926648 0.231520133926648 0.231520133926648 0.241860534730483 0.233545488192416 0.250167226751203 0.239663858977144 0.236478619100421 3 3|0 -|/ 18411808 18412748 18412389.5 18411291 18415791 - gene protein_coding_gene FALSE TRUE AT3G49640.1 FAD binding / oxidoreductase similar to nitrogen regulation family protein [Arabidopsis thaliana] (TAIR:AT5G67220.1); similar to Os04g0531300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053395.1); similar to PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog isoform 1 [Pan troglodytes] (GB:XP_001166638.1); similar to unnamed protein product [Macaca fascicularis] (GB:BAE90806.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009) -0.220851486221816 -2.05412648815904 0.0647911182276165 1 1.17205468390433 8.03974789861627 -0.220851486221816 0.116550386334170
AT2G34110_at 1.55703370761534 2.12530399729276 1.78820805533793 1.67963599307542 1.45884075682101 1.69935094283104 1.66009011458701 1.79450130315300 1.89847213441370 1.96429611184717 1.49533765277678 1.45568447698893 1.61513249755265 1.70496984886410 1.44759947243006 1.51840119831736 1.70866361057586 1.47160805893584 1.70821937930117 0.205720696861583 0.202249235023876 0.206397462105398 0.202611159286861 0.199442069134667 0.201855864498638 0.203195556725733 0.199442069134667 0.212916049927250 0.200122610604772 0.199981731551609 0.199442069134667 0.200326473471342 0.203078197000324 0.203892168445629 0.205618056744467 0.205003960709283 0.200644603334108 0.200247095344425 2 2|0 +|/ 14409608 14410372 14409870.9 14409538 14410396 + gene protein_coding_gene FALSE TRUE AT2G34110.1 similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G34355.1); contains domain gb def: Hypothetical protein At2g34110 (PTHR13620:SF1); contains domain 3-5 EXONUCLEASE (PTHR13620) -0.216272308388913 -2.05398968514274 0.0648063469318903 1 1.17185520468649 3.42495584746046 -0.216272308388913 0.110894224167595
AT1G29330_at 2.48012170961259 3.04909954013415 3.48027353209349 3.33823844993923 2.8904521603414 2.39933698266876 1.97130521189163 2.02967584704582 1.74982169739499 1.73675487920639 1.53919243112277 1.75384049527338 1.99671568462339 1.78740795102500 1.84562547823525 1.41627459428323 1.21142514867961 1.39263532222540 1.89346791010017 0.241723781855849 0.243099920154808 0.235080511702206 0.235648928556672 0.226513833026667 0.233101002314998 0.232300039411810 0.228020269122182 0.234163051816244 0.227911964234885 0.230269919156836 0.229351815904491 0.234620640870273 0.230590397774339 0.234428648231795 0.236106259874262 0.241337635360090 0.226980994492497 0.231667579551741 1 1|0 -|/ 10258569 10260818 10259760.4 10258234 10261098 - gene protein_coding_gene FALSE TRUE AT1G29330.1 ERD2 (ER lumen protein retaining receptor 2); receptor Encodes a protein similar in sequence to animal and yeast endoplasmic reticulum retention signal receptor. This protein can functionally complement the yeast homologue. Transcript is detected in flower buds, stems, root, and leaves. Identical to ER lumen protein retaining receptor (HDEL receptor) (ERD2) [Arabidopsis Thaliana] (GB:P35402); similar to ER lumen protein retaining receptor, putative / HDEL receptor, putative [Arabidopsis thaliana] (TAIR:AT3G25040.1); similar to ER lumen protein retaining receptor [Medicago truncatula] (GB:ABE77504.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) 0.234533090019664 2.05343363483688 0.0648682802746069 1 1.17104445321545 4.41043182942456 0.234533090019664 0.132757967502854
AT1G68185_at 4.02159661813193 4.14147631547801 3.91396480725785 3.92865121018053 4.30914673568372 4.39155018601889 4.17077035663318 4.50300995382541 3.35371673523586 3.81143724751658 3.94345875089792 3.86650426529779 4.03217045969231 3.56119702589674 4.75936219395884 3.93877641447167 4.04104791276335 3.35908078004075 3.32497728181898 0.193224310498071 0.196235615581374 0.194585557644862 0.19783952739674 0.197649342548295 0.197834950417755 0.196689979047099 0.202560059649841 0.222160221451992 0.205499865430875 0.193224310498071 0.194242485217559 0.199742514924168 0.194828159296753 0.197101868363047 0.198707531064238 0.204274301009368 0.199306369268535 0.198865929885113 1 1|0 +|/ 25560367 25561770 25561027.6 25560089 25562185 + gene protein_coding_gene FALSE TRUE AT1G68185.1 ubiquitin-related similar to Os01g0607300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043530.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52822.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.183802113810865 2.05283363786527 0.0649351708838197 1 1.17016972037949 7.8897258463518 0.183802113810865 0.0628167717166078
AT3G30610_at 1.65083599648778 1.67443623256827 2.07484884515859 2.10327044801864 1.26466680060187 1.46458336800385 1.68143379175241 1.92841893356077 1.30833665008288 1.47624531816538 1.36732356771412 2.03078110366705 2.42593169104895 1.62603932114803 1.9194397306689 1.73958977393392 1.97411571787646 1.89078523525012 1.72982634997627 0.257897518739546 0.241928706652322 0.239159499936051 0.242349380780336 0.247063575173705 0.241508237754650 0.243626830098527 0.239405415176983 0.244044326121634 0.242803716597741 0.242248270067255 0.239159499936051 0.248143275950338 0.239159499936051 0.239159499936051 0.250248007831647 0.239419384049432 0.240309993605768 0.242411745345620 3 3 - 12189284 12189481 12189396.429 12189170 12189508 - gene protein_coding_gene FALSE TRUE AT3G30610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12685.1) 0.180004560887681 2.05231647345315 0.0649928789714225 1 1.16941582815905 3.4185885722215 0.180004560887681 0.055359387089631
AT4G21430_at 5.9220812284612 6.22793449959256 4.86187037965109 4.66870488952376 4.90013882512679 5.10851452988118 4.87937185343788 4.76992954495997 5.22583594155835 5.55205681066015 5.66670957026597 6.39525038306326 5.5726853200834 5.73036197550919 5.73805240696559 5.4772365205751 5.13453266540431 5.18258821329725 5.5064251151831 0.201906003034035 0.199324854660292 0.201508292078148 0.199860605649782 0.193535107271826 0.206043455927815 0.196653125150612 0.195240249029633 0.204111928661875 0.206461237546996 0.190863136647713 0.196753142457105 0.190863136647713 0.199034167243055 0.194476989692924 0.190863136647713 0.203746096994163 0.196804005952505 0.194020660816128 4 4 - 11407863 11408778 11408280 11407815 11412170 - gene protein_coding_gene FALSE TRUE AT4G21430.1 B160; transcription factor similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABD32344.1); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.190475474736111 -2.05196765960615 0.0650318288009799 1 1.16890738915230 10.6874597626773 -0.190475474736111 0.0746861071597745
AT1G68570_at 9.58616854338908 9.77965504280074 10.1098463213484 10.2266259433007 10.1228528061721 9.93330321074965 10.3717851530954 10.1168742291614 8.94386916421605 8.65079377392809 8.54113465887463 8.81823593752678 9.10691426211575 8.82493132066527 8.57999486766327 9.46149717400027 8.99664629749547 8.24356897506879 8.15657878664529 0.142447093473138 0.140859627442696 0.145594643907572 0.144858431642523 0.140859627442696 0.142394254512496 0.140859627442696 0.143105717608198 0.149710936374032 0.142082608096639 0.144620434088833 0.148579195050895 0.140859627442696 0.153403618053329 0.154307155067135 0.142668071900249 0.160135886146631 0.151304633433315 0.147048933358394 1 1|0 +|/ 25753050 25753686 25753245.6 25750399 25753938 + gene protein_coding_gene FALSE TRUE AT1G68570.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057335.1); similar to nitrite transporter [Cucumis sativus] (GB:CAA93316.2); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.186202261680436 2.05135062323654 0.0651007831117441 1 1.168008064914 18.7335702453886 0.186202261680436 0.0674653853949455
AT4G24240_at 3.88921342946508 4.20396490262738 3.10203610669694 3.55802001497638 3.48415377670304 3.33745690406311 4.4265329850948 4.00863617756265 3.27430192486114 3.95080413735656 3.84838537096075 4.00201243035962 3.73527280826882 3.90792643820236 3.50681218612975 4.28560350786515 4.37305534814051 4.1762002580632 3.78226860955714 0.188394966543845 0.191905681997387 0.189126146382513 0.189074637623862 0.186659912954003 0.186670710458543 0.192104156710652 0.193573978692493 0.207343632590525 0.193362180999099 0.187553078707388 0.197646707491697 0.198710426843949 0.185720228615943 0.197292495666173 0.188317422968573 0.193500834552712 0.208314319835200 0.193534662757092 4 4|0 +|/ 12572473 12573406 12572824.9 12571776 12573735 + gene protein_coding_gene FALSE TRUE AT4G24240.1 WRKY7 (WRKY DNA-binding protein 7); transcription factor Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family. Identical to Probable WRKY transcription factor 7 (WRKY DNA-binding protein 7) (WRKY7) [Arabidopsis Thaliana] (GB:Q9STX0); similar to WRKY17 (WRKY DNA-binding protein 17), transcription factor [Arabidopsis thaliana] (TAIR:AT2G24570.1); similar to WRKY transcription factor NtEIG-D48 [Nicotiana tabacum] (GB:BAB16432.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.225693260085225 -2.05130702273303 0.065105658103296 1 1.16794452158958 7.57551850419387 -0.225693260085225 0.122752679234366
AT2G45500_at 4.61892461868616 4.51076439449229 4.47006451657857 4.31089420365218 4.49300709073151 4.01298929674262 3.72095675969316 3.49754570685819 3.92402135993293 3.39149255902332 3.9780399532625 3.62387991524383 3.77017344698107 3.58502875956381 3.2574292547064 3.88508311969677 3.72407899197073 3.3981660769552 3.11247015174928 0.269873359845213 0.260687354696088 0.28090082231035 0.268723820369564 0.2598180770192 0.273908924990664 0.256903798214154 0.256903798214154 0.262464556926516 0.257389306335450 0.26453570829536 0.268934140237044 0.256903798214154 0.261606602157976 0.259236266600411 0.266663989838293 0.263515104125445 0.261097475720672 0.256903798214154 2 2 - 18757276 18758323 18757613 18756872 18759925 - gene protein_coding_gene FALSE TRUE AT2G45500.1|AT2G45500.2 ATP binding| similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G27120.1); similar to Tobacco mosaic virus helicase domain-binding protein [Nicotiana tabacum] (GB:AAL25088.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain MIT; (InterPro:IPR007330); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.205715578278066 2.05101319433872 0.0651385201399368 1 1.16751631007948 7.76875813844569 0.205715578278066 0.0974903726874818
AT2G24050_at 4.86780586603938 5.46095731566404 4.36888373733806 4.7606845729995 5.129597782557 4.57775932757966 5.29176825397661 6.03440825282756 5.11674591348016 5.27132527087078 5.30695405158532 5.89089494267205 5.18619419330749 5.5376942342731 5.63063971304885 5.60816874273175 4.80071856425968 4.82038451048994 5.34771605586691 0.196336291912779 0.182499874165760 0.194440800717947 0.192323937228973 0.187501318438221 0.195497471821308 0.184837608269151 0.182499874165760 0.191645856998447 0.187669430186589 0.188434641981462 0.186984240127412 0.184326940608041 0.185535860049937 0.191324525226717 0.182499874165760 0.208282422243396 0.197727573337583 0.182499874165760 2 2 - 10232582 10233154 10232850.273 10232305 10235718 - gene protein_coding_gene FALSE TRUE AT2G24050.1 MIF4G domain-containing protein / MA3 domain-containing protein similar to eukaryotic translation initiation factor 4F, putative / eIF-4F, putative [Arabidopsis thaliana] (TAIR:AT5G57870.2); similar to Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 [Medicago truncatula] (GB:ABE79486.1); similar to Eukaryotic initiation factor iso-4F subunit p82-34 (eIF-(iso)4F p82-34) (GB:Q03387); similar to initiation factor (iso)4f p82 subunit (GB:AAA74724.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) -0.301029930684134 -2.05045014506506 0.0652015356769548 1 1.16669581537525 10.3579674048487 -0.301029930684134 0.201916781221845
AT2G32800_at 8.428437417138 8.54735943828429 8.79936000680089 8.66274282978435 9.33112634141507 9.18982530113522 8.47677193928012 8.39740241298989 8.6547594124755 8.38860530011913 8.86768901128706 8.60981793876494 8.66086561980693 8.41864445896595 8.05572225703067 8.0771004810316 8.14671376274618 8.0868106172067 8.60781385825783 0.176432474977058 0.168430504391956 0.171844432514479 0.173100634211448 0.178188613997299 0.172354245796495 0.164988999027368 0.175748199316558 0.175869988148552 0.170691885338096 0.164789974284144 0.170919811995046 0.174736185467461 0.172208988690576 0.170172472310192 0.168893075415520 0.171625971003528 0.172529272698308 0.177078115737515 2 2 + 13925524 13925943 13925712.6 13923529 13926256 + gene protein_coding_gene FALSE TRUE AT2G32800.1 AP4.3A; ATP binding / protein kinase similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to putative receptor kinase Lecrk [Oryza sativa (japonica cultivar-group)] (GB:BAD10609.1); similar to putative receptor-type protein kinase LRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD08845.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.174149239632497 2.05003102853171 0.065248479715441 1 1.16608512116377 17.1870348985064 0.174149239632497 0.0420605456256502
AT1G06110_at 8.40431873605173 8.26514725160592 8.23244109693036 8.45662027865076 8.89099224827312 8.65605169870994 8.26690611375326 8.15535178725161 7.23365430078659 7.99369091040764 7.8531542898632 7.71675507561556 8.03825904178105 7.88536328352257 7.66649388623356 8.01470790239667 7.99502704099125 7.88665563850214 8.17234953231422 0.161079061533330 0.154563792198168 0.159762323061252 0.157777796084985 0.150542712553524 0.161510278155750 0.154428122849030 0.155703671203987 0.183107388983384 0.152285821128587 0.158748639854181 0.151346037855899 0.152855448197618 0.157925198724253 0.155264664313252 0.152379908838245 0.166592045303583 0.158844161542004 0.153817108959905 1 1 - 1853247 1854039 1853683.727 1853076 1855030 - gene protein_coding_gene FALSE TRUE AT1G06110.1 SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) similar to Os11g0265200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067658.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96082.1); contains InterPro domain ApaG; (InterPro:IPR007474) 0.184124565251256 2.04870400124213 0.0653973259366637 1 1.16415183116447 16.2569537852530 0.184124565251256 0.0641158624842175
AT3G05050_at 4.1564518900495 4.07532769851892 4.73745277640021 4.72622097699286 4.18667999025244 4.18000326464057 4.42063986504197 3.68134548702259 3.73907271906118 4.0696365301608 4.21830122004958 4.48749331086215 3.85872993392927 4.11746188998419 4.09231807570259 3.91907519790381 3.71352089457659 4.09957427078389 4.12102688153277 0.222277732952761 0.226782217899515 0.228840402751915 0.222899616184166 0.224979266022581 0.229710191038861 0.220531656805643 0.215349852079904 0.226684016222703 0.219613107562563 0.217393509597897 0.220596501146726 0.220352910009047 0.215349852079904 0.221778866188792 0.216889505052574 0.225890577190672 0.219771151743502 0.221649281553998 3 3|0 -|/ 1408874 1409726 1409201.7 1408619 1411807 - gene protein_coding_gene FALSE TRUE AT3G05050.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G54610.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83648.1); similar to putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa (japonica cultivar-group)] (GB:BAC20085.1); similar to CRK1 protein [Beta vulgaris subsp. vulgaris] (GB:CAB89490.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.230439327942851 2.0482459003665 0.0654487829775128 1 1.16348455637333 8.29045927335268 0.230439327942851 0.128726155799355
AT1G49590_at 5.25132333976414 4.99895617221477 5.5804076411238 5.31754895983282 5.76758803778805 5.61104684845308 5.47131490210749 5.1935597634449 4.87058389576467 5.2321641610007 5.35522238582937 5.05851043023513 5.35263078518467 5.53670251590259 5.16905275693722 5.36024607235671 5.3017980343002 5.0620986970014 5.56719760863592 0.176447680602660 0.171132615584497 0.174794763963540 0.171392440593313 0.172582487025135 0.170949051987645 0.175386840886177 0.179287715688760 0.183966158671664 0.178529783288697 0.173039289446685 0.176212300948239 0.179771862056526 0.170949051987645 0.184352076191945 0.174269838703849 0.177841882200120 0.172509603851363 0.176118903396061 1 1|0 +|/ 18359133 18359904 18359675.8 18358454 18360310 + gene protein_coding_gene FALSE TRUE AT1G49590.1 formin-binding protein-related similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G54230.1); similar to Os06g0215200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057136.1); similar to hypothetical protein LOC506275 [Bos taurus] (GB:NP_001068719.1); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690) 0.195788407667298 2.04713594093874 0.0655736191448316 1 1.16186801810498 10.6478921738506 0.195788407667298 0.0837907977104522
AT3G24770_at 4.36388486646243 4.78976218383887 4.04055212279722 4.44512244088367 3.80805601821693 3.98569140035632 4.41960072929554 4.94689445840497 4.14685727397414 4.21153560792154 4.91596898336921 6.27180535876651 4.82571506709405 5.0978953537198 5.71024492209798 5.28248160476547 4.64299323488130 5.0362014846737 4.18838842886631 0.231115603065631 0.229699442831265 0.241707882267858 0.226425549051717 0.229276163133027 0.232672094394141 0.232207419887924 0.228863553277959 0.229417053416527 0.237209623020271 0.229461578094356 0.225853883866292 0.224750708006835 0.225569961847944 0.232199061000292 0.224750708006835 0.231737450139617 0.232380497066607 0.234532263590635 3 3 + 9046788 9047004 9046898.909 9046540 9047470 + gene protein_coding_gene FALSE TRUE AT3G24770.1 CLE41 (CLAVATA3/ESR-RELATED 41); receptor binding Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE41 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE44 (At4g13195). similar to CLE44 (CLAVATA3/ESR-RELATED 44) [Arabidopsis thaliana] (TAIR:AT4G13195.1) 0.240236375156712 2.04702202994411 0.065586443271832 1 1.16170213812436 9.05253237157783 0.240236375156712 0.140018403096626
AT1G05510_at 0.8965393273403 0.834558917633313 1.06726657084236 0.965906820633648 1.08403160107154 1.31857929190134 1.24642306076162 1.04458107279433 0.98961247655376 1.16512783698123 1.31200631572643 1.37208808539247 1.63247377494173 1.01552707754489 0.769969948933001 0.932920962212871 1.12902852334920 0.93448017516095 0.484683376455813 0.173158073614572 0.176785716949588 0.177323545910616 0.178491897757231 0.168209160358299 0.17017735587682 0.175568294951162 0.173097016988926 0.185189875942244 0.172474121559761 0.170231253215027 0.171557660224275 0.17645867311647 0.173984098087644 0.178534357373762 0.168209160358299 0.173996072582209 0.177872991938906 0.17679566465696 1 0|1 /|+ 1630054 1630652 1630295.8 1629448 1630862 + gene protein_coding_gene FALSE TRUE AT1G05510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31985.1); similar to putative embryo-specific protein Ose731 [Oryza sativa (japonica cultivar-group)] (GB:AAT93933.1); similar to Os05g0569500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056364.1); contains InterPro domain Protein of unknown function DUF1264; (InterPro:IPR010686) 0.180462218861962 2.04652953112403 0.0656419160427046 1 1.16098499068044 2.06579571015795 0.180462218861962 0.0573613373709755
AT3G31300_at 0.909102236472107 0.775035675515657 0.9974842087844 0.808207603421722 0.876646883259922 0.871563398589762 0.518540344891154 0.705236755951741 0.676171775267072 0.827649116018525 1.02583588545531 0.875040173967952 1.08428983251484 1.07106807689897 1.05161673909173 0.785063802617782 1.23156735147538 0.992218603019654 0.95802492367063 0.185196895668996 0.188528755342179 0.190074757348347 0.184792613768951 0.189179798399158 0.188393143766437 0.186549162143841 0.183879147451516 0.188841234094248 0.187022100117923 0.184158534453532 0.183377844787809 0.189789379903994 0.191003651771729 0.185302129227222 0.184636069051525 0.183377844787809 0.190688540634705 0.195371546927823 3 3 + 12676936 12677066 12677001.727 12676906 12677097 + gene protein_coding_gene FALSE TRUE AT3G31300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32903.1) 0.177734528392206 2.04652573061389 0.0656423442858756 1 1.16097945686553 1.72532855325195 0.177734528392206 0.0515345247335121
AT2G38760_at 3.33637383154114 3.74921441168661 3.21321069901559 3.31889358848766 3.16150797371128 3.32196779281409 4.15958572518432 4.22641614364586 2.10148511286359 2.74695010746635 3.37008460279561 3.89790491843388 3.50497053077111 3.27967372138901 2.99518195214078 3.48506491764832 3.06793646644235 3.4870513655641 2.30938974969428 0.217801986507112 0.216162695120239 0.217764558326518 0.222163959363652 0.221058949913697 0.215575164352155 0.221894657893683 0.224771699952898 0.225461861269394 0.223209772029622 0.221728618088855 0.215575164352155 0.222930978723259 0.219668894255245 0.223523046151186 0.216975114470745 0.228125092039683 0.223073303257058 0.218197884454308 2 2|0 +|/ 16208744 16209532 16209169.8 16208072 16209745 + gene protein_coding_gene FALSE TRUE AT2G38760.1 ANNAT3 (ANNEXIN 3, ANNEXIN ARABIDOPSIS 3); calcium ion binding / calcium-dependent phospholipid binding Annexins are calcium binding proteins that are localized in the cytoplasm. When cytosolic Ca2+ increases, they relocate to the plasma membrane. similar to annexin, putative [Arabidopsis thaliana] (TAIR:AT5G12380.1); similar to Os05g0382900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055408.1); similar to Annexin, type V [Medicago truncatula] (GB:ABE87577.1); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Annexin, type plant; (InterPro:IPR009118) 0.193019694108038 2.04622929079659 0.0656757553483592 1 1.16054783160983 6.44685887879726 0.193019694108038 0.0796464939491592
AT1G51745_at 3.40350028981531 3.9218172669013 3.10667189897375 3.27737572477231 3.31939161149121 3.75298853761241 3.14234797208676 3.74486996448522 3.87801634590503 4.35315735838834 4.49141297383593 3.94795356928591 4.06453179613522 3.71150315984445 4.11414022361185 3.9752971246531 3.19038168834105 3.90222342292535 4.52430479677693 0.269424695919582 0.269424695919582 0.279884969226118 0.280859945076221 0.275577989440077 0.27840844158111 0.280895222238989 0.282576355289004 0.269424695919582 0.273575175145153 0.273202297298241 0.269424695919582 0.271614468832110 0.285045711831255 0.277882909311467 0.269424695919582 0.276404571110657 0.276294909800410 0.269424695919582 1 1 + 19197677 19198122 19197864.143 19195191 19198456 + gene protein_coding_gene FALSE TRUE AT1G51745.1|AT1G51745.2 similar to ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G21295.1); similar to Os04g0599100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053748.1); similar to Os01g0558500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043335.1); similar to serine-rich repeat protein [Streptococcus agalactiae] (GB:AAZ95526.1); contains InterPro domain PWWP; (InterPro:IPR000313)|similar to ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G21295.1); similar to Os04g0599100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053748.1); similar to Os01g0558500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043335.1); similar to serine-rich repeat protein [Streptococcus agalactiae] (GB:AAZ95526.1); contains domain Tudor/PWWP/MBT (SSF63748) -0.258086301152027 -2.04605093102384 0.0656958655768977 1 1.16028814618697 7.54687373919355 -0.258086301152027 0.159438796881968
AT1G50600_at 7.76887913570816 8.35545075009864 8.2117323493136 8.3356896434847 8.90370868198475 8.04985355025484 8.23710197456548 7.86964837559713 7.05161735884127 7.13107435346946 7.5470090542459 7.11457961265213 7.62536126255853 7.50259066031639 6.83587861637118 8.12663483157269 6.95048186356419 6.90640574445437 7.01062356969991 0.222423580458723 0.217802911774067 0.226856119907933 0.214629518554065 0.217257476991973 0.250993524295325 0.219610679777633 0.221779688524666 0.243734223123307 0.214629518554065 0.222217220017214 0.224513548309677 0.222584305360786 0.227862853681220 0.216243860666050 0.214629518554065 0.256307105217437 0.240286090722810 0.225616119728643 1 1 - 18741074 18741641 18741391 18740800 18743215 - gene protein_coding_gene FALSE TRUE AT1G50600.1 SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regulator-like [Oryza sativa (japonica cultivar-group)] (GB:AAM08829.1); similar to Chitin-inducible (GB:ABB47346.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.289577637823579 2.04578255139096 0.0657261365346089 1 1.15989741172266 15.4117861241528 0.289577637823579 0.191420863449470
AT1G74350_at 2.03379518885666 2.01479956704402 2.26766818609924 2.71427595066449 2.11808475726401 2.18020689312571 1.67940406925517 1.69733533705479 1.62608131276909 2.18320068256692 1.72422127394248 1.91993340088314 1.90917036491387 1.66035542986919 2.08301115441546 2.07612146823906 2.15021811971850 1.99639277021087 2.24964369267516 0.197921636498412 0.199871284224087 0.197311945985065 0.197606749878384 0.195087184275322 0.197689359475157 0.199539885791353 0.209471822379663 0.203178438385640 0.199413850079487 0.194806284991811 0.195705946815463 0.195027213026716 0.197899847345552 0.205906365778183 0.198410844849013 0.206094426092792 0.200057633050022 0.193190189075940 1 1 - 27952779 27953257 27953018.364 27952683 27954944 - gene protein_coding_gene FALSE TRUE AT1G74350.1 intron maturase, type II family protein similar to maturase-related [Arabidopsis thaliana] (TAIR:AT5G04050.1); similar to cob intron3 ORF [Marchantia polymorpha] (GB:AAC09440.1); similar to Os06g0634100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058135.1); similar to hypothetical protein MapooMp76 [Marchantia polymorpha] (GB:YP_717178.1); contains InterPro domain RNA-directed DNA polymerase (Reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) 0.192005754003027 2.04539917002593 0.0657694014572871 1 1.1593392806942 4.06798119055941 0.192005754003027 0.0781624946723865
AT1G67870_at 12.3109372298206 11.8336724316936 12.4625782649435 11.7956832786639 12.0154238513472 11.3762241797785 12.5889212963168 11.9773627487399 12.2278938192512 12.61919552225 11.7498357856900 11.8998911062203 12.6013398510482 12.0990245990778 11.4087993108875 12.6351640721 12.5606991404385 11.7961807699176 12.4823845102398 0.0632871340727098 0.0631186628278116 0.0642707238104685 0.0633576677787496 0.0628826142841124 0.065910797735578 0.0628679901708837 0.0637450312480425 0.0663814839399577 0.0634325776603177 0.0629876140139783 0.0624229676154801 0.061328964723294 0.0643336342399381 0.063061487458631 0.061328964723294 0.0709653961483429 0.0654579279572618 0.0637002320656139 1 1|0 -|/ 25453273 25454318 25453538.2 25453030 25454675 - gene protein_coding_gene FALSE TRUE AT1G67870.1 glycine-rich protein similar to ATEM1 (Early methionine labelled) [Arabidopsis thaliana] (TAIR:AT3G51810.1); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G05440.2); similar to ENSANGP00000018997 [Anopheles gambiae str. PEST] (GB:XP_309858.3) -0.307268577058629 -2.04457220668394 0.0658628161465711 1 1.15813551697006 24.3136128001644 -0.307268577058629 0.208752325999364
AT2G46940_at 0.730693733216033 0.743721055695322 1.34006035908229 1.00458183313819 1.20653634402639 1.08326038360819 1.68546681405921 1.03983944381257 0.87720677654174 1.14087004360199 1.56494854715629 0.840354297662091 1.39188019994705 0.936248571318127 0.798777957385323 1.60085187045844 1.78580581656487 1.97685862348279 1.01914446475552 0.183075890757419 0.181625927753649 0.186755591034508 0.188917832575042 0.183109883275124 0.183594760988979 0.188646828580362 0.179380196935780 0.193087048518157 0.194703028644881 0.184808465373308 0.186602473073851 0.188178143234772 0.189172982770952 0.186655741763896 0.192518180698913 0.18484239835995 0.184946030276782 0.186756560039996 2 2 - 19293886 19294380 19294160.636 19293846 19294650 - gene protein_coding_gene FALSE TRUE AT2G46940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62070.1) 0.229119054399217 2.04413520180098 0.065912231040713 1 1.15749947051301 2.29145641106142 0.229119054399217 0.127726442967135
AT1G21900_at 8.82475871989973 8.96775804581167 9.52684202725377 9.50803368516438 9.09546427372741 8.80906423929214 8.59632659778511 8.5822353455388 7.96912898564218 7.41838000123012 7.1048232664822 7.2770872392937 7.87122468810839 7.82587881492189 7.10188659641379 7.77157861973488 7.520823251601 7.43667387798342 7.4787545673047 0.199086505561499 0.199053232312751 0.205364969038085 0.199225331039292 0.198948461549680 0.215283602696868 0.195595304210635 0.200072733287755 0.20449498160314 0.198314680415060 0.197130126685255 0.197317520331589 0.199191235646562 0.206505534309623 0.205456115212526 0.195595304210635 0.199980443173631 0.195595304210635 0.195595304210635 1 1|0 -|/ 7691215 7692210 7691833.6 7690791 7692427 - gene protein_coding_gene FALSE TRUE AT1G21900.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G09580.1); similar to Os06g0210100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057112.1); similar to Os02g0768200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048237.1); similar to emp24 protein [Hyacinthus orientalis] (GB:AAT08688.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.179370286012836 2.04407136779756 0.0659194520690389 1 1.15740656663670 16.544227814664 0.179370286012836 0.0555465316542337
AT4G03660_at 1.32756109472277 1.7807320007835 1.51213873801672 1.79489869592202 1.09707989742977 1.36910357029932 1.38478548698830 1.83693981634155 2.03021758285875 1.99543506643015 1.71873763365259 1.29100252160926 1.67209459151627 1.50519148308493 1.30968122396149 1.50334984143913 1.49912663652458 1.69250568275008 1.5145092433787 0.192382564169899 0.197283665945141 0.195225045053117 0.194702971570969 0.191619461409137 0.195650948920228 0.193937698345056 0.192150472432320 0.203430306255650 0.198446207823388 0.190668888592324 0.19369977956265 0.197496885549911 0.199693093643154 0.191766934440264 0.197440741464491 0.190668888592324 0.193722782075822 0.191920034011568 4 4|0 +|/ 1625146 1625857 1625414.333 1625144 1625893 + gene protein_coding_gene FALSE TRUE AT4G03660.1 similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT4G07440.1); similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT2G05880.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.230979401681989 -2.04377978062053 0.0659524464400364 1 1.15698220569011 3.19824582891624 -0.230979401681989 0.12993599206037
AT3G48760_at 8.7050183476465 8.84643810400937 9.08296896782129 9.07776501690747 9.33221591989775 8.95295648580294 8.70231576033417 8.57102665323913 8.90935464990958 8.94575429602968 8.98145650748574 9.1253976610607 8.95414902629263 9.13394847555614 8.51165342848354 8.9508769076915 8.34770760492908 8.90456628672434 8.81749076350556 0.128682878722080 0.121615201763834 0.123036166819924 0.121953610527948 0.124979792943132 0.134478561298591 0.126848797824864 0.128383513807783 0.132952181591605 0.129323028496915 0.127543775909441 0.125120662906081 0.121482982913597 0.124824297258407 0.128649720680584 0.121482982913597 0.137993842628755 0.130992142595558 0.127787223573684 3 3 + 18088494 18088971 18088761 18086779 18089276 + gene protein_coding_gene FALSE TRUE AT3G48760.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT3G26935.1); similar to Os09g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063622.1); similar to Os08g0535400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062355.1); similar to P0482D04.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB89658.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.189064899381546 2.04351379027856 0.0659825579507102 1 1.15659511770935 17.7861311855038 0.189064899381546 0.0736451148729505
AT1G69080_at 2.61199904878878 2.53817294159617 2.2529768464398 2.21592246171518 2.28166347145712 2.41475072844087 2.43168311131805 2.86425262021993 3.04526081140398 2.97008966981615 3.72125271886044 4.15319328596664 3.68200028680131 3.91013367562044 4.18865303601765 3.63880869309614 2.99129965801386 3.91060955665062 3.19120718668557 0.220681274105919 0.225546864853454 0.220677132502772 0.229864589903396 0.229158040412034 0.222228546341692 0.220239927694868 0.225003639906513 0.227612294138572 0.221716194812553 0.222521125674875 0.227587547725348 0.223547016691444 0.227404717267212 0.232965656441869 0.219672635482079 0.222077480815158 0.230229253733852 0.231476119833159 1 1 - 25975795 25976784 25976266 25975578 25976934 - gene protein_coding_gene FALSE TRUE AT1G69080.1|AT1G69080.2 universal stress protein (USP) family protein similar to MRH6 (morphogenesis of root hair 6) [Arabidopsis thaliana] (TAIR:AT2G03720.1); similar to Os12g0501400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066822.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN08227.1); contains InterPro domain UspA; (InterPro:IPR006016) 0.192721377221168 2.04327910336235 0.0660091364750283 1 1.15625360105827 5.87310086367046 0.192721377221168 0.079614910968564
AT1G17390_at 0.558418897507955 0.814584467732607 0.787570492120622 0.477879224058953 0.723234890017249 0.897941283391083 1.05609708081947 0.896346572045068 1.11867992127960 0.879369111453489 1.11542890684775 0.92147493053838 1.01711258250700 0.885210244366507 0.646287003694241 0.6993916430223 0.940170222056832 0.850197876624366 1.486360155073 0.183605071188855 0.181725109166643 0.185462952125211 0.185562051687627 0.178639438812508 0.181739784209345 0.179198360951444 0.180866451674746 0.188987028716588 0.178639438812508 0.186013470693373 0.178639438812508 0.180981268535483 0.188305913463178 0.178639438812508 0.178639438812508 0.182898173668266 0.180407128803064 0.181857482818379 1 1 - 5958743 5959123 5958884.182 5958621 5959644 - gene protein_coding_gene FALSE TRUE AT1G17390.1 nucleic acid binding / ribonuclease H similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.19338291759541 -2.04282351582994 0.0660607609329594 1 1.15559067342120 1.79944856619956 -0.19338291759541 0.0807206851934057
AT3G03240_at 1.90331938596275 1.70947533153243 1.69490351096029 1.48779096447319 1.2022309673788 1.76514799974521 1.6878132781881 1.78461837674275 2.30278605771913 1.68734426812584 1.46166151320443 1.7249571521884 1.76419227666746 1.99863450724186 1.65521721103615 1.75219083002959 1.94867516659861 1.67307851590519 1.83778638250201 0.200573576452257 0.195874752152166 0.197888850019946 0.205617573498287 0.197266211618511 0.201327634427617 0.203380892253202 0.194694739085826 0.198637212687964 0.197358055717157 0.194694739085826 0.201938978182153 0.20515644441007 0.202700700016534 0.195647978624097 0.197203960664558 0.199619698165905 0.202614359489284 0.196259408180749 3 3|0 -|/ 746937 747754 747294.9 746662 748607 - gene protein_coding_gene FALSE TRUE AT3G03240.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G03230.1); similar to Os12g0152100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066173.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95828.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.214550619320250 -2.04160827182668 0.0661986507306563 1 1.15382264918126 3.49939487656858 -0.214550619320250 0.110364645052969
AT4G33620_at 2.59869343006925 3.38077497429186 4.2094015956915 3.33060833451266 3.59914220751168 3.94741323299632 2.88986885711357 2.71269017650992 3.28904194262033 2.93620351100199 2.76464222392343 2.55871732743531 3.08406090390263 3.49014590031814 2.37627507950867 3.12055445946194 2.65759386020410 2.81852772389471 3.10270908507447 0.319079342712647 0.330555325192876 0.311410059282428 0.346183589041422 0.311410059282428 0.340902951224347 0.336946650075544 0.311410059282428 0.446171647027503 0.311410059282428 0.311410059282428 0.311410059282428 0.366103489928670 0.364777412092734 0.311410059282428 0.311410059282428 0.311410059282428 0.311459686913107 0.311410059282428 4 4 + 16152476 16152576 16152525 16147695 16152856 + gene protein_coding_gene FALSE TRUE AT4G33620.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G09730.1); similar to hypothetical protein DDBDRAFT_0191980 [Dictyostelium discoideum AX4] (GB:XP_629102.1); similar to Os05g0207900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054903.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) 0.312815494223707 2.04132746514318 0.0662305513912129 1 1.15341417010791 6.31764053328545 0.312815494223707 0.214518977964331
AT3G16480_at 5.87021096911126 6.22705467781726 5.30717751658931 5.45422168733008 5.57826724381771 4.79131260215281 6.18137632136834 6.51115750863935 4.95622993379789 5.51679902843498 5.91655134780802 6.49828107669982 5.53701255964978 5.87378030345499 6.02089335639672 5.84020129417709 5.31176843165705 5.30789146854398 5.70695186654277 0.24102839990247 0.230870252233135 0.229592963620748 0.2325896524625 0.227895076222322 0.232588153344103 0.228417758014568 0.226247683420344 0.232506362123478 0.230266374313934 0.227383293680438 0.225450189466996 0.228187546261035 0.227218133780851 0.237007060461325 0.225450189466996 0.237637671849063 0.228544272448735 0.225652581303696 3 0|3 /|+ 5601485 5602680 5601978.429 5599784 5602992 + gene protein_coding_gene FALSE TRUE AT3G16480.1 MPPALPHA (mitochondrial processing peptidase alpha subunit); metalloendopeptidase Identical to Probable mitochondrial-processing peptidase alpha subunit 2, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 2) [Arabidopsis Thaliana] (GB:O04308;GB:Q94C54); similar to mitochondrial processing peptidase alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G51980.1); similar to Mitochondrial-processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) (Ubiquinol-cytochrome-c reductase subunit II) (GB:P29677); similar to Os05g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056089.1); similar to Os01g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044193.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) -0.259867284944179 -2.040373373278 0.0663390476179874 1 1.15202645273025 11.3309095272151 -0.259867284944179 0.162063882652852
AT1G15180_at 5.24171606296845 5.25961431031542 4.95087597564337 4.95297152868859 6.27384634434664 5.84495692524303 6.1950948632955 6.7263222529776 5.71962401102163 6.05403046409849 5.86954251397251 5.93556531772101 6.23773510508549 6.03708926907971 5.89841830243044 5.77507823552633 5.94863467923594 5.7489190660618 6.29440979704908 0.16894574458714 0.164396046785881 0.176053628892008 0.168212825811444 0.167135439947377 0.173756127445264 0.164617847944061 0.174252708485862 0.175766406637795 0.167916325795000 0.177951104851904 0.168049044867228 0.168706765696842 0.165125817559088 0.176130817086168 0.172865281382564 0.174310302124098 0.176254442379935 0.167972814549613 1 0|1 /|+ 5225608 5225876 5225717.1 5224380 5226697 + gene protein_coding_gene FALSE TRUE AT1G15180.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15150.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); similar to Os01g0504500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043143.1); similar to Os01g0684900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043893.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.220669729246375 -2.03995653288069 0.0663865017379937 1 1.15142024235189 11.6577052338659 -0.220669729246375 0.118194360562753
AT2G18410_at 2.35071448602112 2.47727153971108 2.37434659017389 2.66325731232795 3.4694577143541 1.95580671348483 3.49634426889370 2.84936799072685 2.94394499694503 2.98131606778617 2.12554987552152 2.82982163268128 2.08546249235048 2.32048222221769 2.02069847307455 2.41012160979903 2.05768149043971 2.5375878330321 2.80684152355370 0.209684092925745 0.212330088371439 0.228509592609561 0.209561531200070 0.215224402023851 0.215860987492778 0.214814954810314 0.215078705888586 0.231907409752226 0.213327969484576 0.210710517165304 0.207009593484361 0.208828502268885 0.223619936536827 0.215918855983289 0.211908069153059 0.20796972806136 0.212904637553838 0.207009593484361 2 2 + 7998910 7999556 7999216.4 7997828 7999856 + gene protein_coding_gene FALSE TRUE AT2G18410.1|AT2G18410.2 similar to Os03g0201700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049299.1); similar to Unknown (protein for MGC:158278) [Danio rerio] (GB:AAI28833.1)|similar to Os03g0201700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049299.1) -0.394991323937544 -2.03991779049123 0.0663909138844344 1 1.15136390182253 5.30913411016228 -0.394991323937544 0.290051374431156
AT2G47070_at 8.49525801070994 8.91175753634667 8.67002761760603 9.00208130540457 9.3484995433723 9.19932221551771 9.50224414469633 9.53142276881789 8.17798930541833 8.1218516340665 8.51541385641753 8.4608512061299 8.815796357153 8.6818564905139 8.64732021396766 8.82898436076328 8.71080563979894 8.70526946024522 8.32650194478408 0.171853754569696 0.176641583822863 0.171853754569696 0.179424583833908 0.182134424901129 0.181476799062576 0.182202347109464 0.183849225050654 0.191513583808701 0.195530247213816 0.174831382204894 0.176508145880733 0.171853754569696 0.173394743794196 0.175636224462564 0.174425302024845 0.177837667120875 0.173763643130568 0.193933364402654 2 2|0 +|/ 19344445 19347564 19346292.389 19343765 19347939 + gene protein_coding_gene FALSE TRUE AT2G47070.1 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. Identical to Squamosa promoter-binding-like protein 1 (SPL1) [Arabidopsis Thaliana] (GB:Q9SMX9;GB:O80717;GB:O80718;GB:O82651); similar to SPL12 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 12), transcription factor [Arabidopsis thaliana] (TAIR:AT3G60030.1); similar to Os03g0833300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051808.1); similar to SBP [Medicago truncatula] (GB:ABE82410.1); contains InterPro domain SBP; (InterPro:IPR004333); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.203409146016577 2.03980081413054 0.0664042373162348 1 1.15119379328353 17.5223607225822 0.203409146016577 0.0958599088705407
AT1G56500_at 9.62111770005307 9.61986319900157 9.52643209781722 9.35680338782682 9.56204521336108 9.38743970997992 10.5309558958220 10.2049558565095 9.85039835560226 10.1116711565189 10.2575479985548 10.1949160489139 9.95778497831929 10.2003093325390 10.1760695513964 10.4931966884825 9.97905177426101 9.98004060252657 10.0147730611986 0.0679554194877301 0.0660369032149835 0.0671536619786093 0.0683445318504204 0.0680870598604445 0.0681433581638156 0.0685085466015812 0.067715198487525 0.078819760617524 0.0737845739440251 0.0669421550301392 0.0660607824837737 0.0673445427489093 0.0676650420108817 0.0708285632119124 0.066903427897082 0.0709664554022532 0.0730958915659502 0.0709293350084792 1 1|0 +|/ 21163758 21170731 21167584.6 21163409 21170986 + gene protein_coding_gene FALSE TRUE AT1G56500.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G39970.1); similar to HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95582.1); similar to HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95581.1); similar to Os03g0311300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049921.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Low-density lipoprotein receptor, YWTD repeat; (InterPro:IPR000033); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833); contains InterPro domain NHL repeat; (InterPro:IPR001258) -0.186729648249668 -2.03877996706144 0.0665206168965748 1 1.14970942698654 19.7997743723701 -0.186729648249668 0.0704097693007990
AT2G07690_at 3.51077105034945 3.09782489699922 3.26248323924603 3.5536402460449 2.33367134444841 2.23627058487805 3.533853402916 3.52040928804625 2.77739646374407 3.40272895810861 3.39423198515635 3.61866364552214 2.93301874216934 2.97413074827873 4.01660146703482 3.13406935014789 2.963169720116 2.78719239958996 2.98639438497105 0.183940936175635 0.192660980892277 0.185274101682222 0.186599274261949 0.181360032135234 0.188577884647887 0.191834931360372 0.187062418585281 0.195284320875433 0.187106133385931 0.18840580185744 0.189514988123107 0.18958442021572 0.190829958978197 0.187442692059100 0.190356531868368 0.181865553006749 0.193998896629518 0.187576767527941 2 2|0 -|/ 3523379 3524185 3523904.5 3523160 3527443 - gene protein_coding_gene FALSE TRUE AT2G07690.1 minichromosome maintenance family protein / MCM family protein similar to DNA replication licensing factor, putative [Arabidopsis thaliana] (TAIR:AT2G16440.1); similar to DNA replication licensing factor mcm5-A (Minichromosome maintenance protein 5-A) (xMCM5-A) (CDC46 homolog-A) (xCDC46-A) (CDC46p) (p92) (GB:P55862); similar to DNA replication licensing factor, MCM5 component (ISS) [Ostreococcus tauri] (GB:CAL51451.1); similar to DNA replication licensing factor mcm5 (Minichromosome maintenance protein 5) (GB:Q561P5); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain MCM; (InterPro:IPR001208); contains InterPro domain Bacterial regulatory protein GntR, HTH; (InterPro:IPR000524); contains InterPro domain MCM protein 5; (InterPro:IPR008048) -0.198535075473028 -2.03873867009181 0.066525328902015 1 1.14964938513036 6.27268618637928 -0.198535075473028 0.089079386910608
ATMG01240_at 1.32881204110834 1.84191774265657 1.8602644709618 1.83606461058636 1.45072479729875 1.97973109493239 1.68776968371903 1.86228345255399 2.34820210189446 1.98858413706526 0.813197465041437 2.28457544681837 1.56394250713327 1.653698777639 1.77577203453513 0.870759875455164 1.27973012736877 1.71941318119156 1.84151511473115 0.367724687507953 0.317144530329254 0.347866920010426 0.362019125604036 0.317144530329254 0.317144530329254 0.317144530329254 0.371516260267561 0.364707633420175 0.317144530329254 0.338389892211085 0.317144530329254 0.317144530329254 0.317144530329254 0.317144530329254 0.317144530329254 0.35420225779235 0.408592247197643 0.317144530329254 M M - 309365 309556 309487.333 309338 309640 - gene protein_coding_gene FALSE TRUE ATMG01240.1 Identical to Hypothetical mitochondrial protein AtMg01240 (ORF100c) [Arabidopsis Thaliana] (GB:P92554) -0.231398547115223 -2.0383655308338 0.0665679184967064 1 1.14910689792063 3.50823096745789 -0.231398547115223 0.131129973347692
AT3G07330_at 4.61724354269115 4.77209412644954 4.70862109181242 4.43459218524953 4.86528876387241 5.01258482248439 5.19051007373631 5.55990670686009 5.02799520887529 4.23652370617575 5.41193821364246 5.46527453029084 5.4673067896127 5.24258885477157 5.05391230734112 4.83306700406009 5.14129157093303 5.08252443831522 4.34766249133032 0.252195530859906 0.248482887257452 0.259833238075474 0.257912958694941 0.256227180418791 0.264581448990736 0.253465552249007 0.259906719915993 0.26847215822165 0.250593245465428 0.249760386054632 0.248635651158115 0.254075007583061 0.250383879526076 0.248482887257452 0.250086706644078 0.252487148512136 0.259643491524976 0.255998894306881 3 3 - 2336154 2336691 2336436.727 2335618 2339106 - gene protein_coding_gene FALSE TRUE AT3G07330.1 ATCSLC06 (Cellulose synthase-like C6); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC05 (Cellulose synthase-like C5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G31590.1); similar to putative glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAT44138.1); similar to putative CSLC9 [Oryza sativa (japonica cultivar-group)] (GB:BAC10759.1); similar to cellulose synthase-like C3 [Physcomitrella patens] (GB:ABI55235.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.197588632457087 2.03820232502739 0.0665865546276982 1 1.14886963401023 9.76992104701848 0.197588632457087 0.087767986689844
AT3G27310_at 6.89515822981101 7.35538459359877 6.78203116486425 6.7092781386314 7.76436979742569 7.10915920812132 6.51990782134163 6.79827204339927 6.53888713142359 6.59321917225506 7.08173746074987 7.00848849283147 6.7548141306102 7.20936288151494 6.48434877119816 7.00427679901637 6.63064321678294 6.54117926051967 6.5093292538534 0.226368270581181 0.214191831789984 0.224750831397363 0.218973671316867 0.222230540733389 0.238762612458609 0.225037225230653 0.219025404184143 0.228457677356309 0.219699888602159 0.215463933611453 0.217328376543749 0.219111047868526 0.228555408973308 0.223240727733825 0.213416570003688 0.235714515942808 0.227312347355775 0.222831343795608 3 3|0 -|/ 10088653 10089807 10089165.3 10088438 10090338 - gene protein_coding_gene FALSE TRUE AT3G27310.1 PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo. similar to PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01650.1); similar to H0811E11.4 [Oryza sativa (indica cultivar-group)] (GB:CAC09488.2); similar to OSJNBa0081L15.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE03155.2); similar to Os04g0485200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053131.1); contains InterPro domain UBX; (InterPro:IPR001012) 0.245620048015966 2.03727273989599 0.0666927954753507 1 1.14751837250194 13.6849459058977 0.245620048015966 0.147237778478307
AT1G32250_at 0.98649813115176 0.744704811290279 0.95479203049736 1.27498557613531 0.914284209563849 0.793014016829455 0.975724845305142 0.847939436694147 1.05251764884441 0.550810019642383 1.11558514910829 0.936963614917683 1.46654366258358 1.18014196155022 1.36505551057322 0.965006945303115 1.21034393700221 0.904935721399216 0.974126870025536 0.205208933092269 0.198695799541558 0.197715164979263 0.196052564210521 0.195462281786158 0.201987510564861 0.198014393008384 0.198093037555996 0.200354459831822 0.200871071301120 0.202829142262443 0.198602296342525 0.197855783475162 0.198234855609656 0.195934887840879 0.196221966300914 0.201396462004630 0.200031816113949 0.205461662795201 1 1 + 11639868 11640280 11640062 11639823 11640323 + gene protein_coding_gene FALSE TRUE AT1G32250.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G03000.1); similar to Os05g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056407.1); similar to calmodulin [Theileria parva strain Muguga] (GB:XP_765284.1); similar to Os01g0505600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043146.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.189736351056705 2.03651704456547 0.0667792799953398 1 1.14642005928691 1.93760467000448 0.189736351056705 0.075833392194149
AT1G08700_at 7.05677384893146 7.4638141542274 7.17800262723512 7.33129070428069 6.9264226494565 6.71125371760049 6.54590681292837 7.11721770048712 7.6875775862039 7.53358401400182 7.5148586501081 7.705757176797 7.07223747459215 7.36174657926606 6.97069912777868 7.4848578996174 6.75807661215906 7.01064538596389 7.83566776778434 0.170731749353598 0.155697745215251 0.166231578840445 0.163981127973286 0.164906181005691 0.171806934335046 0.17392427270671 0.155697745215251 0.177812684651044 0.162305766036333 0.155697745215251 0.170441665438733 0.166627607268194 0.160664037952240 0.171915559774813 0.162305398914542 0.190264162682351 0.162762781719001 0.162300907167951 1 1 - 2769909 2770323 2770087.545 2769818 2771480 - gene protein_coding_gene FALSE TRUE AT1G08700.1 presenilin family protein Identical to Presenilin-like protein At1g08700 [Arabidopsis Thaliana] (GB:O64668;GB:Q8L9V0); similar to presenilin family protein [Arabidopsis thaliana] (TAIR:AT2G29900.1); similar to putative presenilin [Oryza sativa (japonica cultivar-group)] (GB:BAD81114.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22A, presenilin; (InterPro:IPR001108) -0.229967815272557 -2.03648367799913 0.0667831010126855 1 1.14637156865733 14.5015701032010 -0.229967815272557 0.129718622852443
AT1G10480_at 1.03988604288871 1.19049244945649 1.26855284137802 0.816084413364489 1.62614393058566 1.07598191459486 1.57174704431151 1.42004119045982 1.46748472416227 1.36975694414089 1.24489807703396 1.33687491174603 1.28485957917447 0.999508296666827 1.02603350172462 0.705348559580069 0.891018731595647 0.759837935653612 1.30374347566612 0.213163605021543 0.214918315359558 0.215781756798121 0.210464658929256 0.209722535624280 0.209731809522619 0.220466425750639 0.208680512082342 0.222929881905583 0.218598638386960 0.22299506057248 0.2160195807915 0.213900894353488 0.227461028388123 0.223703286005866 0.212247099391179 0.222518037230613 0.211945911802844 0.212602449793108 1 1 + 3449806 3450334 3450044.273 3449692 3451227 + gene protein_coding_gene FALSE TRUE AT1G10480.1 ZFP5 (ZINC FINGER PROTEIN 5); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 5 (ZFP5) [Arabidopsis Thaliana] (GB:Q39264); similar to ZFP6 (ZINC FINGER PROTEIN 6), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G67030.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB64610.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.229065919487283 -2.03622012971786 0.066813288814181 1 1.14598857286048 2.45680414361494 -0.229065919487283 0.128702287850081
AT2G45460_at 4.12136217386194 4.16901065653831 4.11944186342549 4.27656725988313 3.95777253018704 4.21321718491733 3.46868813619635 3.87600088746238 3.39162619840944 3.40203728054166 3.50232728423914 3.24531351621551 3.53603306694661 3.53023740633856 3.62520762364767 3.52765887732946 3.44089074968165 3.37003314116129 3.13698001944536 0.210790828844617 0.204738515602131 0.207971328299236 0.209509010718067 0.204792382883368 0.215022272385759 0.210415010258294 0.203172033784117 0.211768660819086 0.202973745725567 0.202843508770707 0.205105108088045 0.218222605589828 0.212567832972147 0.202843508770707 0.202843508770707 0.209269909348669 0.208510490801082 0.204373884748001 2 2 - 18744200 18744682 18744433.727 18743913 18748764 - gene protein_coding_gene FALSE TRUE AT2G45460.1 forkhead-associated domain-containing protein / FHA domain-containing protein similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19115.1); similar to Os03g0127600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048833.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984); contains InterPro domain TSC-22 / Dip / Bun; (InterPro:IPR000580) 0.197491227409000 2.03613179239943 0.0668234101660221 1 1.14586020295247 7.41647119038923 0.197491227409000 0.0879203563084343
AT1G06710_at 2.20379697650881 2.16862805413898 2.53569172351921 2.93165344210386 2.35476343208043 2.38717726590345 2.54506829553511 2.2986501569715 1.83102382427110 2.22249320579492 2.08284993788046 2.31322818140985 2.49428569694157 2.16138330838676 2.05999172611419 2.31739665038075 2.34961619960046 2.13756932808910 2.25188898299494 0.199525013130402 0.199525013130402 0.208007648032885 0.207811473548464 0.204785240115259 0.210576375356488 0.20914186753333 0.209050327387099 0.213779204002651 0.203104187239251 0.204661467482418 0.203399628484246 0.199525013130402 0.200556436011458 0.203253115427379 0.208299274630762 0.203800294921764 0.205068768169317 0.210975361263692 1 1 - 2057278 2057832 2057536.364 2057278 2060118 - gene protein_coding_gene FALSE TRUE AT1G06710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to Os04g0488500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053152.1); similar to OJ991113_30.18 [Oryza sativa (japonica cultivar-group)] (GB:CAE02059.2); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE94700.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.193011859679937 2.03612531681978 0.0668241521697799 1 1.14585079286459 4.59884973482219 0.193011859679937 0.0811320225227779
AT3G01720_at 7.60885021247924 7.97928575733929 7.7538375052657 7.82538416212756 7.2557872619613 7.33800589616089 6.75067340988312 6.46649874949594 6.91279341830724 6.3817394331464 6.68604000824919 7.16305234190751 6.42957275748691 6.71847392379002 6.25103086150776 6.46751970627971 6.65213657103855 6.7641063427693 6.49054405396807 0.193047819048237 0.191573491645543 0.190457528726424 0.194927644628303 0.195582422398616 0.196457525280292 0.206304678198526 0.193090757066781 0.198779866044056 0.199460258512657 0.202677981567078 0.187981865424556 0.187981865424556 0.187981865424556 0.196486357531035 0.194161009333183 0.187981865424556 0.189411834660147 0.19816688240176 3 3 - 262440 262971 262733.545 262258 265912 - gene protein_coding_gene FALSE TRUE AT3G01720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13500.3); similar to Os01g0904500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045124.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL50270.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448) 0.194196301533759 2.0361092053897 0.066825998330226 1 1.14582738034412 13.9905489689737 0.194196301533759 0.0829682171487337
AT3G06500_at 9.40871107923826 9.4586348145171 9.62632168374794 9.45356799820546 10.0573712938582 9.79896813497375 9.28920565996055 9.2147841156241 8.95428364146832 9.31045831412832 9.10959359943993 8.90947303714395 8.65165755473866 9.26436564301988 8.51474221055253 8.77009419523541 9.30141944990167 9.37368586237895 8.79634734555108 0.109301682482485 0.107069191531032 0.106721737154114 0.106850815588381 0.112726094074900 0.109903003901896 0.109505535793617 0.110019809463658 0.120505512752344 0.107911021561483 0.105506515617351 0.106386078365343 0.11381105550355 0.106806502194163 0.117395366939436 0.109439400983043 0.111582008060713 0.112991472116107 0.108385714106292 3 3|0 +|/ 2014745 2015441 2015140.444 2012085 2015711 + gene protein_coding_gene FALSE TRUE AT3G06500.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G56560.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT5G22510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G05820.1); similar to invertase [Oryza sativa (indica cultivar-group)] (GB:AAO25633.1); similar to neutral invertase [Daucus carota] (GB:CAA76145.1); similar to Plant neutral invertase; Glycoside transferase, six-hairpin [Medicago truncatula] (GB:ABE94613.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) 0.178869602015065 2.03600795504133 0.0668376014000191 1 1.14568024884253 18.5420666197326 0.178869602015065 0.055981772539265
AT1G13170_at 4.65084373702714 4.42938839995141 4.21668384615573 4.20684866720257 4.2960400416758 4.41071375563292 4.23851729398318 4.44268261889904 4.67107617944889 4.88477874301566 5.60779565731228 5.86308075021884 4.84389477259826 4.93324124381258 5.59906855444363 4.9835880295372 5.00491068791481 5.38988502513421 4.7326715773815 0.201443468946447 0.201443468946447 0.207801904907578 0.209838584422789 0.216558826218011 0.207232090265418 0.220018724306866 0.206536615526825 0.211404806915982 0.207004416763698 0.203217000614763 0.205458076922439 0.203009875138949 0.202032992871307 0.213228179553326 0.204611542255043 0.201443468946447 0.203318387202461 0.21204898063041 1 1|0 -|/ 4488847 4489567 4489286.667 4488622 4492578 - gene protein_coding_gene FALSE TRUE AT1G13170.1 oxysterol-binding family protein similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22540.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.178777244353843 2.03593592159134 0.0668458574282374 1 1.14557557550674 9.38197742343439 0.178777244353843 0.0558011369265962
AT4G18630_at 2.04294603741242 1.36578024778102 1.24179134746590 1.28722093246255 0.87680182649348 0.604479249089795 1.10745874194219 0.734988038756416 1.11778452964180 1.52426701718115 1.19587630753986 1.54314147137920 0.7866888129018 1.15989145955097 0.933748981004782 1.53198871032233 1.16841719883485 0.584220826944723 1.21046355183276 0.197517030479574 0.197292203432216 0.201023317027340 0.194864582782413 0.196890422615954 0.198170691589929 0.190670485998241 0.191070125680949 0.198633168020196 0.200102219882819 0.192391142915488 0.199692741399670 0.194757788909250 0.205881102812194 0.201287655770698 0.194229346699588 0.195568325017281 0.190670485998241 0.198257458895126 4 4 + 10258042 10258555 10258250.2 10257089 10258954 + gene protein_coding_gene FALSE TRUE AT4G18630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45850.1); similar to Protein of unknown function DUF688 [Medicago truncatula] (GB:ABE80249.1); contains InterPro domain Protein of unknown function DUF688; (InterPro:IPR007789) -0.240697453043582 -2.03565643181090 0.0668778998820875 1 1.14516945680788 2.35626751298133 -0.240697453043582 0.142022048376842
AT4G35090_at 12.3544937537240 12.6039039805953 13.2146699177221 13.3486852599067 12.7682084873456 12.7028180192874 13.6928841862193 13.933310372918 13.5550653678660 13.8996602003797 13.4817614738345 13.1168182883053 13.7664993724388 13.4556624799213 12.8613354935783 13.7513549301875 13.6456487003688 13.7302440524687 13.6623727021218 0.0630734319821683 0.0615006557242363 0.0621072515966207 0.0629687475459375 0.0646892077714793 0.0628522301847357 0.061031497620745 0.064803702509954 0.0697114147507962 0.0616055565820356 0.0633863821471628 0.0612097306394522 0.0617084689419526 0.0652955016485225 0.0632106828526101 0.0616725944654795 0.0714814488588585 0.063932021610924 0.061031497620745 4 4 - 16701141 16701901 16701550.182 16700347 16703330 - gene protein_coding_gene FALSE TRUE AT4G35090.1|AT4G35090.2 CAT2 (CATALASE 2); catalase Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Identical to Catalase-2 (EC 1.11.1.6) (CAT2) [Arabidopsis Thaliana] (GB:P25819;GB:O49615); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT3 (CATALASE 3), catalase [Arabidopsis thaliana] (TAIR:AT1G20620.1); similar to catalase [Raphanus sativus] (GB:AAF71742.1); similar to catalase [Brassica juncea] (GB:AAD17934.1); similar to catalase (GB:1906388A); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226)|Identical to Catalase-2 (EC 1.11.1.6) (CAT2) [Arabidopsis Thaliana] (GB:P25819;GB:O49615); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT3 (CATALASE 3), catalase [Arabidopsis thaliana] (TAIR:AT1G20620.5); similar to catalase [Raphanus sativus] (GB:AAF71742.1); similar to catalase [Brassica juncea] (GB:AAD17934.1); similar to catalase (GB:1906388A); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226) -0.18354323843332 -2.03534014331872 0.0669141785620768 1 1.14470989348719 26.6683042583866 -0.18354323843332 0.0652685105923827
AT2G27020_at 9.52191093506175 9.65187183591765 9.78902874992737 9.88931151526764 9.76055467272958 9.09074815750862 9.650942728369 9.61967299967486 8.44769629684022 8.92478901015439 9.06559562775804 9.20847302075803 8.80004114038718 8.97298506896793 9.42474781712732 8.94431701750163 8.9045583322696 8.87805401859126 8.43876286127987 0.131461174171288 0.127169537293446 0.132033077563671 0.132769601947495 0.126841197278728 0.140742886455052 0.132454429875545 0.135827749371844 0.144852953683444 0.125811586834826 0.125653262397359 0.134050351363868 0.133819770533156 0.135323316605892 0.127550975160296 0.124861874528616 0.133918671207712 0.130816794000030 0.130540743907677 2 2|0 -|/ 11535611 11537302 11536700.444 11535426 11538054 - gene protein_coding_gene FALSE TRUE AT2G27020.1 PAG1 (20S proteasome alpha subunit G1); peptidase Encodes 20S proteasome subunit PAG1 (PAG1). Identical to Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome subunit alpha type 7) (20S proteasome alpha subunit G-1) (Proteasome component 8) (DiDi 17A-2a) (PAG1) [Arabidopsis Thaliana] (GB:O23715;GB:O81151;GB:Q9M3S3); similar to PAE2 (20S proteasome alpha subunit E2), peptidase [Arabidopsis thaliana] (TAIR:AT3G14290.1); similar to Proteasome subunit alpha type 3 (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7) (Proteasome component C8) (GB:O24362); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.221204132548894 2.03525776006175 0.066923631055522 1 1.14459019624812 18.4360531467295 0.221204132548894 0.119466019774554
AT2G36250_at 9.10147459150928 8.91789465701108 8.73098051001158 8.73278519727405 8.89239588157161 8.56108918047015 9.35910368287987 9.2061889882356 9.09574232862554 9.189038426693 9.11814053455804 9.13813328886518 9.2049892633335 9.09388053193589 9.30204338529824 9.43474061947206 9.06788118118904 9.31799396254265 9.21318320449476 0.094012435259678 0.0947153918963566 0.100662084757447 0.095759276571896 0.0925893141403479 0.104388529165881 0.0943070983437423 0.0921882685317107 0.103044774854815 0.0938699307650373 0.0902488139109912 0.0918617369336415 0.0916771716507121 0.0973744813060325 0.0911745727055894 0.0902488139109912 0.0963337600818226 0.096927209061771 0.0941488901378386 2 2|0 -|/ 15204749 15205977 15205220.2 15204448 15207682 - gene protein_coding_gene FALSE TRUE AT2G36250.1|AT2G36250.2 FTSZ2-1 (FtsZ homolog 2-1); structural molecule Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division. similar to FTSZ2-2 (FtsZ2-2), structural molecule [Arabidopsis thaliana] (TAIR:AT3G52750.1); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE77845.1); similar to FtsZ protein [Gentiana lutea] (GB:AAF23771.1); similar to FtsZ-like protein [Nicotiana tabacum] (GB:CAC44257.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.186557714141108 -2.03514961225833 0.0669360416253763 1 1.14443306778926 18.1255957523723 -0.186557714141108 0.0706885160130466
AT3G24060_at 1.80948811979217 1.96817364650908 2.23223868404990 1.87788296636336 1.86266580559436 2.00086796353742 1.61450494405428 1.70256386984317 1.24479484014523 1.71384014164803 1.39154127997428 1.28663676370643 1.80384897170745 1.73907417355543 1.25417385210438 1.67505989934653 2.07310965991448 1.35406450142772 1.29009576431782 0.223743623549995 0.222548579008124 0.233547322728461 0.232340160883034 0.222548579008124 0.229737266873273 0.222548579008124 0.232035229071308 0.231534231780350 0.230085334767019 0.226357175520776 0.225631249536527 0.228913542843619 0.227929865812506 0.234164842051219 0.223687994736398 0.224406936917398 0.240580253043117 0.222548579008124 3 3 - 8689657 8689991 8689870.636 8689596 8690039 - gene protein_coding_gene FALSE TRUE AT3G24060.1 self-incompatibility protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24068.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) 0.187838132758323 2.03483652499680 0.066971982334681 1 1.14397820040897 3.37776435984502 0.187838132758323 0.0729304345702136
AT4G33070_at 2.17169098312063 1.96623858677183 2.77897640574591 2.53322399964942 2.26546171516511 2.39334151670153 2.25604692041900 2.46259121644204 2.63421362237607 2.22892432396924 2.33738649919361 2.08819972372047 3.06768258524288 2.75148508948051 2.46893702914886 2.61418522192790 2.49357908750129 2.81429032930837 2.59582674330914 0.205176091023398 0.204252666037712 0.208703677888485 0.204260427548258 0.212556210450374 0.207366924284891 0.200460532715676 0.201643082321016 0.217034226727272 0.199882230415827 0.202927546449938 0.200357627770437 0.208201162751559 0.203510420147798 0.199684692053998 0.201654660334088 0.208642396839578 0.202846619381225 0.206601742678360 4 4 - 15952643 15953264 15952930.636 15952292 15954774 - gene protein_coding_gene FALSE TRUE AT4G33070.1 pyruvate decarboxylase, putative similar to PDC3 (PYRUVATE DECARBOXYLASE-3), pyruvate decarboxylase [Arabidopsis thaliana] (TAIR:AT5G01330.1); similar to PDC2 (PYRUVATE DECARBOXYLASE-2), pyruvate decarboxylase [Arabidopsis thaliana] (TAIR:AT5G54960.1); similar to pyruvate decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT5G01320.1); similar to pyruvate decarboxylase [Fragaria x ananassa] (GB:AAL37492.1); similar to pyruvate decarboxylase [Dianthus caryophyllus] (GB:AAP96920.1); similar to pyruvate decarboxylase 1 [Lotus corniculatus] (GB:AAO72533.1); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP binding region; (InterPro:IPR012001); contains InterPro domain Thiamine pyrophosphate enzyme, central region; (InterPro:IPR012000); contains InterPro domain Pyruvate decarboxylase/indolepyruvate decarboxylase; (InterPro:IPR012110); contains InterPro domain Thiamine pyrophosphate enzyme, C-terminal TPP-binding; (InterPro:IPR011766) 0.185877807549727 2.03471975580517 0.0669853914382175 1 1.14380855990728 4.88634129745625 0.185877807549727 0.0695711436018709
AT4G01470_at 3.05562292706580 2.78180991368685 3.10289971259321 2.87719096372724 2.716347219244 3.17999968553620 2.94062397239394 2.94392039210118 3.91765067263182 3.55818543053120 3.58951684338849 2.86392784616758 3.03326311909634 3.34695842481211 3.52537533255531 3.16707807700619 2.80551141554676 3.20447734910362 3.45598137017859 0.183126062346923 0.185358375859402 0.191462670321269 0.184982535901217 0.187532391951342 0.194391812324002 0.185376898841878 0.191149015973534 0.206576645672602 0.184300093946354 0.188790445661066 0.188635352743929 0.195605927974865 0.192703344151295 0.200925979936177 0.188206975741673 0.195417063720514 0.199951395575739 0.188685057114681 4 4 - 625094 625641 625363.455 625092 625850 - gene protein_coding_gene FALSE TRUE AT4G01470.1 GAMMA-TIP3/TIP1;3 (tonoplast intrinsic protein 1;3); water channel Identical to Putative aquaporin TIP1.3 (Tonoplast intrinsic protein 1.3) (Gamma- tonoplast intrinsic protein 3) (Gamma-TIP3) (TIP1.3) [Arabidopsis Thaliana] (GB:O82598); similar to GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma), water channel [Arabidopsis thaliana] (TAIR:AT2G36830.1); similar to aquaporin [Vitis vinifera] (GB:AAW02943.1); similar to putative aquaporin [Vitis vinifera] (GB:ABH09329.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.206655256428884 -2.03434621069650 0.0670283041419112 1 1.14326590510604 6.3677782026636 -0.206655256428884 0.101041175305828
AT3G46200_at 3.5474283160108 3.79728432118342 3.6394400611819 2.89570782468410 3.69678849750299 3.73324886587966 4.33497466832939 4.05669434623233 4.42575802012883 4.42975549849851 4.5026364388939 4.25168471787691 4.14880097340821 4.84298630187748 4.65021367419945 4.56606545359407 4.07744148717078 4.54279674178871 4.61443158508687 0.213002546434645 0.209441165682171 0.211187494810808 0.210030225553053 0.205918131073448 0.202890677266152 0.209657509068951 0.209877654994597 0.206754502217251 0.202890677266152 0.202890677266152 0.208279603942635 0.206434489418017 0.212181199536955 0.202890677266152 0.203361362173760 0.215037451228329 0.207884104595655 0.209917036624859 3 3|0 +|/ 16981150 16981945 16981684.875 16980251 16982189 + gene protein_coding_gene FALSE TRUE AT3G46200.1 ATNUDT9 (Arabidopsis thaliana Nudix hydrolase homolog 9); hydrolase Identical to Nudix hydrolase 9 (EC 3.6.1.-) (AtNUDT9) (NUDT9) [Arabidopsis Thaliana] (GB:Q8VYR2;GB:Q8GXK4;GB:Q9LX75); similar to NUDIX hydrolase [Medicago truncatula] (GB:ABE80009.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.242476289131853 -2.03409155168244 0.0670575740525762 1 1.14289598056432 8.1816008250452 -0.242476289131853 0.144200851219907
AT3G54350_at 7.82333843696715 8.098384180557 8.2416265070445 8.36173348262324 8.85171732384713 8.6650287425251 8.2616624343411 8.16533608801239 7.20065868193897 7.54183308152868 7.16701389153842 7.36956616852222 7.68747434727045 7.20557327324649 7.04139244618315 7.66122441642155 7.74569106186464 7.35575197469362 7.70421520337361 0.186085654846160 0.184351223122483 0.184353230403992 0.184351223122483 0.186378350512536 0.188608634813995 0.184351223122483 0.184351223122483 0.194676942805837 0.186546527672815 0.188403745037142 0.185063171487232 0.189333993424280 0.187653723343753 0.190362256913906 0.186865467713134 0.190507273832984 0.184351223122483 0.184351223122483 3 3|0 -|/ 20133529 20134462 20133991 20133061 20137850 - gene protein_coding_gene FALSE TRUE AT3G54350.1|AT3G54350.2|AT3G54350.3 EMB1967 (EMBRYO DEFECTIVE 1967) similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75530.1); similar to Forkhead-associated [Medicago truncatula] (GB:ABE89642.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) 0.182410760447198 2.03387963261699 0.0670819406790769 1 1.14258815518252 15.7518267010304 0.182410760447198 0.0633973751898639
AT4G39120_at 4.49664162942219 4.39197969713354 3.24668535649917 3.54067272096321 3.75156603727233 3.72969734408668 4.38000598598605 4.82710915220749 4.20644316103981 4.1659703336953 4.67872892626476 4.84878564416101 4.9066915413567 4.62339752305056 5.10567588440899 4.94694305937776 4.38221075770517 4.04272532742717 4.04323230651774 0.21244824991769 0.208930148765318 0.216374895038643 0.207223768644200 0.204976403177305 0.216075104455883 0.207943980978609 0.209641761406623 0.217353336694848 0.211377185177576 0.204976403177305 0.209149484229784 0.213583691930869 0.214175999079475 0.216168770005079 0.204976403177305 0.210129421196135 0.204976403177305 0.217020364564345 4 4|0 -|/ 18225583 18226913 18226225.111 18225569 18227922 - gene protein_coding_gene FALSE TRUE AT4G39120.1 inositol monophosphatase family protein similar to VTC4, 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT3G02870.1); similar to Inositol monophosphatase; Histidinol-phosphate phosphatase, putative, inositol monophosphatase [Medicago truncatula] (GB:ABE79654.1); contains InterPro domain Histidinol-phosphate phosphatase, putative, inositol monophosphatase; (InterPro:IPR011809); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) -0.201716259465288 -2.03306279696482 0.0671759388770914 1 1.14140177023429 8.46076645713965 -0.201716259465288 0.0944317568364604
AT1G22520_at 6.69903132486498 6.6261406672198 6.72219302222182 6.42632600859486 6.79946529234745 6.37351083233916 6.95076331268985 6.7776017519792 6.17081581364905 5.97880758124845 6.65070985417761 6.88898782081617 6.40316016090354 6.66157717941725 6.95481789252857 6.46891693777272 5.95838238290688 6.14451152058527 5.63627221578098 0.144698485096133 0.141422027842186 0.149229811574183 0.137946096452172 0.141925127498806 0.143976962058116 0.147752038816779 0.143098003983242 0.147735724273230 0.141938942324587 0.14487454914716 0.141018195334939 0.141057714678649 0.155259751454654 0.138069039906494 0.14170965191505 0.151381985231774 0.165734169020795 0.145862304383525 1 1|0 -|/ 7953798 7954255 7953972.2 7953011 7954407 - gene protein_coding_gene FALSE TRUE AT1G22520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72170.1); similar to Os03g0840900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051850.1); similar to hypothetical protein MtrDRAFT_AC125481g48v1 [Medicago truncatula] (GB:ABE94329.1); contains InterPro domain Protein of unknown function DUF543; (InterPro:IPR007512) 0.202370311549853 2.03227011614801 0.0672672756082466 1 1.14025064853789 12.8943864459645 0.202370311549853 0.0954585064346467
AT1G13090_at 8.37866682491591 8.6184165723255 8.70214570166176 8.58707082763553 8.84157392239287 8.54742701157453 8.92279292166798 8.60488599908101 7.96971671772409 8.7358770452516 7.5812678381113 7.74510345890198 7.95537937952723 7.98994902749147 7.89747273402685 8.28493166351802 8.43028226128852 8.02785063847809 8.5594188721582 0.143399252143333 0.140839755089589 0.145669877782315 0.145669633021562 0.145440223308955 0.148593087706646 0.143968439864495 0.147012357052616 0.156682459394302 0.141578178792398 0.155313903118099 0.144456260840137 0.143786867945706 0.155058730734001 0.146888197219303 0.140839755089589 0.152554345682467 0.145100556673298 0.144024040180152 1 1 + 4462826 4463359 4463130.545 4461804 4463541 + gene protein_coding_gene FALSE TRUE AT1G13090.1 CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B28 (EC 1.14.-.-) (CYP71B28) [Arabidopsis Thaliana] (GB:Q9SAE3); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to PAD3 (PHYTOALEXIN DEFICIENT 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26830.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.197138733445728 -2.03226576140154 0.0672677777061058 1 1.14024432511775 16.8557227244298 -0.197138733445728 0.0879535554929621
AT2G41660_at 1.39400876976120 1.58322964414868 1.70749864623801 1.50158671453493 1.41168257001637 1.46168325558121 1.49066000650691 1.09866042843644 1.09102435201353 0.74559339309129 1.23091175101969 1.22981521027241 1.22420148207631 1.19146586585628 1.26311146192709 1.08714956424849 1.83238384635986 1.31597188627680 1.27493105901826 0.221567569357760 0.223351406661318 0.223367855088423 0.223275715343208 0.221567569357760 0.221567569357760 0.221567569357760 0.223561011467323 0.243453535304168 0.228187394747296 0.228137799673661 0.22739752239634 0.221614247050451 0.225030590322897 0.234032884133381 0.223110123833356 0.223901871319986 0.222646858926673 0.222643167542495 2 2 + 17375343 17375752 17375529 17374900 17376267 + gene protein_coding_gene FALSE TRUE AT2G41660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25640.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07762.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460) 0.194333266588122 2.03200548769963 0.0672977933880004 1 1.13986639783342 2.62315591350912 0.194333266588122 0.0837784778679994
AT3G09735_at 8.52630912622782 8.86433277447682 8.29391857284436 8.36645702832833 8.62024927117229 8.23880568092143 7.60422721640669 7.52127192076663 8.00267490353916 7.47921802845347 8.44940592281659 8.35785883128734 7.86673385389838 7.74305314081383 7.77521030519398 7.85370300874631 7.63968929277012 7.39584765533442 7.73409070308599 0.199153752307773 0.197064089450025 0.210304588313276 0.204635500851318 0.211351479689712 0.209310694981885 0.201948930603082 0.213498619088281 0.237055521354111 0.206455804182020 0.210881050717244 0.201704657115573 0.209372335698584 0.202157381695887 0.199633672238914 0.197617519001824 0.226844715755783 0.221069556930725 0.200331355431061 3 3 - 2986828 2986978 2986913.455 2986631 2987974 - gene protein_coding_gene FALSE TRUE AT3G09735.1 DNA-binding S1FA family protein Identical to DNA-binding protein S1FA3 (S1FA3) [Arabidopsis Thaliana] (GB:Q93VI0); similar to DNA-binding S1FA family protein [Arabidopsis thaliana] (TAIR:AT2G37120.1); similar to DNA-binding protein S1FA (GB:P42552); contains InterPro domain DNA binding protein S1FA; (InterPro:IPR006779) 0.198674459255929 2.03200304025098 0.067298075696056 1 1.13986284413622 16.0663709304183 0.198674459255929 0.0902381108145022
AT1G66170_at 1.93783668790240 1.71148871457441 2.05062112437776 1.98589405507924 1.59355186617524 1.54163790779066 1.32897554901117 1.63323748531885 2.10391152890660 1.86472210650036 1.88912472713370 2.04468991955815 2.10451308281222 2.03467537057411 2.229324092198 1.68893583555831 2.07817310905855 2.38319875432723 1.51566209765372 0.192858345505287 0.196811697575354 0.199776388377013 0.199395871727024 0.199257743720738 0.196396826918127 0.212830133105580 0.193070277192434 0.192858345505287 0.192858345505287 0.192858345505287 0.194940401623482 0.198201610066885 0.192858345505287 0.195182471818961 0.199072233461127 0.196014020430756 0.195428801253476 0.198217797425481 1 1 - 24642555 24643029 24642848.636 24642348 24645157 - gene protein_coding_gene FALSE TRUE AT1G66170.1 MMD1 (MALE MEIOCYTE DEATH 1); DNA binding encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT2G01810.1); similar to putative collagen [Oryza sativa (japonica cultivar-group)] (GB:AAL58226.1); similar to Os03g0716200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051078.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.184261206434826 2.03171784568366 0.0673309799004582 1 1.13944875303675 3.66524439332343 0.184261206434826 0.0671785150996376
AT1G15600_at 2.47040882616517 2.52452763079232 2.87986587941471 2.64137140101717 2.18970490859187 2.30162714077698 2.2465167503257 2.44665882136581 3.11624183344919 3.30608534984220 2.43562721807107 2.72549084374165 2.67585687792526 2.49567251638146 2.99189467715610 2.9883930921907 2.50495320071252 3.12734835632315 3.12711371391272 0.231027879195809 0.230929313342706 0.231525376981013 0.237575754175795 0.230396231193289 0.230322273251579 0.232143928320750 0.238701330220142 0.235747968013222 0.230087564146475 0.231412342321352 0.228412137227485 0.233365012654163 0.228412137227485 0.23170578330119 0.231868211501856 0.246914001235737 0.236247415188326 0.237607743733254 1 1|0 +|/ 5369072 5369692 5369384.9 5368918 5370339 + gene protein_coding_gene FALSE TRUE AT1G15600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15620.1); similar to putative ATP synthetase alpha chain [Oryza sativa (japonica cultivar-group)] (GB:AAO72570.1); similar to Os02g0787500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048342.1); similar to Os09g0323100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062870.1) -0.179439021317018 -2.03130008979973 0.0673792055650769 1 1.13884222981302 5.42573595157994 -0.179439021317018 0.0580164039936907
AT1G67110_at 1.12018816836712 0.621141090911066 0.968611553666118 1.14620884423073 0.769563669606556 0.835187682152478 0.898497945326392 0.783659774884681 0.85871585288634 0.291301290107366 1.18080430125929 0.848387415290986 1.02000773809816 0.769971139204446 1.07300703114550 0.749876384500452 0.856543687892003 0.9172871591899 0.643550166782421 0.237792799490209 0.233936336849937 0.232061464596697 0.238471792377481 0.228539355821104 0.228539355821104 0.228596982881213 0.232898299711081 0.231315163050206 0.229588628072890 0.228539355821104 0.238257398878088 0.229784592805948 0.236078907228569 0.238963531982049 0.23437061131504 0.228539355821104 0.233099600301156 0.23748156119314 1 1 - 25065647 25067477 25066330 25065394 25069109 - gene protein_coding_gene FALSE TRUE AT1G67110.1 CYP735A2 (cytochrome P450, family 735, subfamily A, polypeptide 2); oxygen binding member of CYP709A similar to CYP735A1 (cytochrome P450, family 735, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G38450.1); similar to putative cytochrome P450 monooxygenase CYP72A5 [Oryza sativa (japonica cultivar-group)] (GB:BAD36323.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.201575514844436 2.03127977055689 0.0673815520412148 1 1.13881273037052 1.65530302964213 0.201575514844436 0.0944826323985296
AT4G26555_at 8.17835124611797 7.9278817982279 7.92176634148897 7.73996689155443 8.80610955060932 8.06985902925203 8.72392600897289 8.59445078282199 8.7345475845845 8.8382796003717 8.72038820884245 8.46277782118868 8.73423305683925 8.57250338410915 8.64009502636164 8.75619829667819 8.62315857592904 8.61548525557348 9.11387887372805 0.125963363408439 0.126505616444856 0.129376806364512 0.134092294984136 0.122590257744299 0.124264738934297 0.132269791534993 0.124275956864763 0.130805762475404 0.122724586249909 0.134319144028057 0.118979650726806 0.121249212750717 0.123141984749201 0.131642400590141 0.125019793977652 0.134569563542746 0.121837406729711 0.122717501706852 4 0|4 /|- 13404649 13405975 13405430.7 13404471 13406251 - gene protein_coding_gene FALSE TRUE AT4G26555.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G19830.1); similar to Os02g0199300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046213.1); similar to FKBP-type peptidyl-prolyl cis-trans isomerase (ISS) [Ostreococcus tauri] (GB:CAL56186.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.238345369423424 -2.03093092933292 0.0674218483567501 1 1.13830630152650 17.0133757758398 -0.238345369423424 0.140015516812613
AT1G18310_at 3.37567569561014 3.37929183718833 3.56025749050622 3.85356364158647 3.55674209006255 3.44325105723782 3.75144834729570 3.79697144618098 3.97105338063446 3.91598397943681 4.16271880772126 4.10876308779026 4.29566574154199 4.2284788936716 4.48042274071574 4.16297969924568 4.22920267708514 4.68983373814972 4.01240842014844 0.321679003136103 0.32030627066948 0.322257689565668 0.337970722910746 0.315751931881039 0.315751931881039 0.33446397497386 0.315751931881039 0.315751931881039 0.315751931881039 0.315751931881039 0.315751931881039 0.318553805262931 0.337881596794223 0.356035703407332 0.325172254521567 0.337077332272748 0.325117916599877 0.337758799052908 1 1|0 -|/ 6301302 6301466 6301370.667 6301193 6303949 - gene protein_coding_gene FALSE TRUE AT1G18310.1 glycosyl hydrolase family 81 protein similar to glycosyl hydrolase family 81 protein [Arabidopsis thaliana] (TAIR:AT5G15870.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96863.1); similar to beta-glucan-binding protein 4 [Medicago truncatula] (GB:ABB69784.1); similar to putative beta-glucan elicitor receptor [Brassica napus] (GB:AAP42646.1); contains InterPro domain Glycoside hydrolase, family 81; (InterPro:IPR005200) 0.177941492389875 2.03074098109722 0.0674437996915169 1 1.13803055945213 7.72027025069856 0.177941492389875 0.0549960375172866
AT2G42220_at 11.2807720780565 11.4057169187256 10.6708871917944 10.6049952256665 11.104854894184 10.9398650797040 11.5865408933154 11.5734805906685 12.0816712301313 11.9365107430569 12.6138448921415 12.7326832407368 12.0482611907939 12.3960272642032 12.5109693032766 12.3038968429993 11.4842208979430 12.0949396614063 11.9324450597455 0.0859662580136346 0.0822936077792529 0.0891087085333002 0.0831784565292059 0.0856419633998817 0.0915174752905907 0.0877378365578125 0.0856806667713192 0.0921597653368306 0.0862836387776125 0.083871241156369 0.0839801922860612 0.0844637680866627 0.0866337539502558 0.0836698203587679 0.0822936077792529 0.0873781422825339 0.0964710244664435 0.0845546053835345 2 2|0 +|/ 17599409 17600351 17599905.375 17599116 17600578 + gene protein_coding_gene FALSE TRUE AT2G42220.1 rhodanese-like domain-containing protein similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08920.1); similar to Os09g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062759.1); similar to Os03g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049793.1); similar to Os02g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047318.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.170956977488983 -2.03069963396083 0.067448578854758 1 1.13797053842881 23.2742129870138 -0.170956977488983 0.0376548715228362
AT3G45480_at 1.13387462909191 1.19075964308195 1.57025030290635 1.44059237104362 1.33619880379059 1.33482734398934 1.40816944402128 1.12395975517075 1.79932714608048 1.42297206424418 1.50888281084208 1.65326026321974 1.75263049487695 1.89332221949730 1.84437933971174 1.38437927033729 2.14455665810153 1.45228615097787 1.44173183652418 0.19922703267104 0.199621828931173 0.20091283831065 0.197741581385507 0.193263323508527 0.202677001974216 0.197723318311397 0.193263323508527 0.203945824085343 0.205069960550077 0.200206312101545 0.193871465763925 0.201173029218003 0.193263323508527 0.207866859289111 0.193263323508527 0.19826076700713 0.194725069402265 0.199091122281962 3 3|0 -|/ 16694208 16694866 16694635.222 16694189 16695577 - gene protein_coding_gene FALSE TRUE AT3G45480.1 protein binding / zinc ion binding similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G45460.1); similar to zinc finger family protein, putative [Solanum demissum] (GB:AAT40530.2); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.177905736460141 2.03058046155945 0.0674623553315933 1 1.13779754610346 2.94677361991789 0.177905736460141 0.0549497234902566
AT3G53800_at 9.17136757985974 9.19913059026533 7.63879591018513 7.93497680462833 8.98043151837376 8.41747671049795 8.46296837095646 8.34460565050623 8.21187330898453 8.56672184922906 9.03863626128565 8.7426752824509 8.28028891009035 8.31908677439058 8.57041063314192 7.77084972814325 8.22725172251962 8.58921200755415 8.18184212509947 0.190408585522337 0.194083581936759 0.201237945154954 0.191662083192053 0.196513585080226 0.190321564453554 0.199013667203885 0.196234891103134 0.216957059918841 0.186664639168897 0.192727650464295 0.185970113434287 0.199888603059144 0.207398562249064 0.193557688691068 0.193548251898324 0.209493748585987 0.200762386519331 0.189580368746865 3 0|3 /|+ 19943017 19943649 19943355.4 19941839 19943870 + gene protein_coding_gene FALSE TRUE AT3G53800.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G09350.1); similar to Os03g0271400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049691.1); similar to putative stress-induced protein [Solanum commersonii] (GB:CAJ19270.1); similar to Os03g0822700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051736.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.214721079066471 -2.03041414670265 0.0674815859477936 1 1.13755612786734 16.8999427299348 -0.214721079066471 0.112075009727169
AT3G05030_at 7.63329685097462 7.66349583527599 8.75033495837542 8.4918713083777 8.73888884668161 8.63374845030732 9.45680653438395 9.30254092938719 8.4541617616185 9.0439332976969 8.98789049927574 8.51311705096463 9.0722964727698 8.94204455034173 8.68382520679988 8.8813416391995 9.26354504486845 8.95996445069743 8.5912747307399 0.105046248946471 0.100794151023899 0.100334771974451 0.10171478119814 0.0993836252929955 0.0998770096633893 0.0972064377980053 0.101391278856629 0.101183452297301 0.100659862223707 0.0963438611071093 0.0976026798543632 0.0985600247190848 0.103965452007395 0.103972908627472 0.0959406807121584 0.102152364154003 0.106672561141381 0.103573592585332 3 3 - 1393544 1394429 1393888.273 1393302 1396790 - gene protein_coding_gene FALSE TRUE AT3G05030.1|AT3G05030.2 NHX2 (sodium proton exchanger 2); sodium:hydrogen antiporter|NHX2 (sodium proton exchanger 2) member of Sodium proton exchanger family Identical to Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2) (NHX2) [Arabidopsis Thaliana] (GB:Q56XP4;GB:Q9CAW6); similar to NHX4 (sodium proton exchanger 4), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT3G06370.1); similar to NHX1 (NA+/H+ EXCHANGER), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G27150.1); similar to sodium proton exchanger [Thellun (GB:ABF48496.1); similar to Na+/H+ vacuolar antiporter [Brassica napus] (GB:AAO38856.1); similar to Na+/H+ antiporter [Thellun (GB:ABJ97691.1); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153)|Identical to Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2) (NHX2) [Arabidopsis Thaliana] (GB:Q56XP4;GB:Q9CAW6); similar to NHX1 (NA+/H+ EXCHANGER), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G27150.1); similar to sodium proton exchanger [Thellun (GB:ABF48496.1); similar to Na+/H+ vacuolar antiporter [Brassica napus] (GB:AAO38856.1); similar to Na+/H+ antiporter [Thellun (GB:ABJ97691.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.178111185554812 2.03038816239485 0.0674845909198983 1 1.13751841044424 17.3886028197454 0.178111185554812 0.0554228511711305
AT3G44880_at 10.4506698116958 10.5581551355429 10.9630944812076 11.0782582806034 11.1544235753355 10.6701523841782 10.7968180395689 10.7496563761750 10.4578951782499 10.4757111453470 10.4302689555916 9.97430512417037 10.6193204057093 10.5968836548752 9.7056805171884 10.5539315784904 10.5342537808705 10.4916759695977 9.95529280572511 0.0855301020312468 0.0813119883863193 0.0859566703019425 0.0833531401749616 0.0834107030600737 0.0824160426731347 0.0810802986694492 0.0806434597326633 0.0833248976143219 0.0818666044581717 0.0821209835735711 0.0826507592652476 0.0808093703915631 0.0838122670634369 0.0895649332657668 0.081593285039588 0.0871161340977167 0.0806434597326633 0.0813722955813905 3 3 + 16396451 16397109 16396856.455 16394580 16397297 + gene protein_coding_gene FALSE TRUE AT3G44880.1 ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. Identical to Pheophorbide a oxygenase, chloroplast precursor (EC 1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell death 1) (Lethal leaf-spot 1 homolog) (Lls1) (PAO) [Arabidopsis Thaliana] (GB:Q9FYC2;GB:O04422); similar to ACD1-LIKE, electron carrier [Arabidopsis thaliana] (TAIR:AT4G25650.1); similar to chloroplast pheophorbide a oxygenase PaO1 [Brassica napus] (GB:ABD60317.1); similar to lethal leaf spot 1-like protein [Lycopersicon esculentum] (GB:AAL32300.1); similar to chloroplast pheophorbide a oxygenase PaO2 [Brassica napus] (GB:ABD60316.1); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) 0.197323814061589 2.03031830932638 0.0674926697456563 1 1.13741701643871 21.1324483645813 0.197323814061589 0.0885050015219114
AT4G14870_at 8.79614937459983 8.86817579736522 8.71452960892136 8.41300537994237 8.99066787214811 8.76101515658358 9.11449005104497 8.97585736407956 9.39404272150717 9.2405553820648 9.19606668829358 9.06200242384626 9.10691181621585 9.07936288727412 9.42906937496462 9.20603809206241 8.81556518046985 9.02832583164461 9.1726213541588 0.126985748384024 0.127975508848134 0.127736493529771 0.129534534903202 0.124656078235949 0.128511094923411 0.127651143131478 0.128155214768810 0.135066108672904 0.127371800000965 0.135803990185522 0.125101348959332 0.128953642260106 0.133378490685071 0.128634600654509 0.126615874310622 0.128545346409488 0.135077138977594 0.126828823394506 4 4 + 8517264 8517719 8517498.182 8517187 8517897 + gene protein_coding_gene FALSE TRUE AT4G14870.1 protein translocase similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77495.1); contains InterPro domain SecE subunit of protein translocation complex; (InterPro:IPR005807) -0.186259504052024 -2.03028492032987 0.0674965316558012 1 1.13736855171135 18.0214817952973 -0.186259504052024 0.0709448264542667
AT1G50670_at 8.54211899268114 8.74835085442385 8.98922672539585 9.01556167544711 9.4005468054462 9.07763146453413 9.11663082423603 9.13685449542087 9.0031009344621 8.80356682278217 9.08837932542415 9.0142978950179 9.1321902280679 9.09229733351734 8.869253610231 9.02642188677354 8.71570966228856 9.06419144100373 8.79593462092355 0.128244330389495 0.121027741237118 0.132128504639547 0.124595996613515 0.126527214646299 0.136094413961179 0.126526678831167 0.122524763077958 0.139471621810382 0.127299119761558 0.124994290452836 0.124614299071833 0.122859689908994 0.130333003737626 0.129197062136304 0.124452813277617 0.129698656227019 0.132349980101042 0.130733743662090 1 1|0 -|/ 18778787 18780160 18779224.571 18778524 18780627 - gene protein_coding_gene FALSE TRUE AT1G50670.1 OTU-like cysteine protease family protein similar to Myosin class II heavy chain (ISS) [Ostreococcus tauri] (GB:CAL55371.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.183780711374965 2.03020721010457 0.0675055207463298 1 1.13725575515091 17.9373036291214 0.183780711374965 0.066554858396319
AT1G68720_at 7.13975583173169 7.52486217865633 7.09892620485443 7.00184991360036 7.87433911727896 7.54986356260881 7.60081943618668 7.59861960161584 7.43656392192557 7.56131891339829 7.46920289575137 7.38342366292147 7.10052135435357 7.34746874912693 6.78255541339315 7.31685976661731 7.12302486571276 6.99708493967667 7.50241680216636 0.180853496759102 0.178383486558214 0.183908816393241 0.187631791967507 0.175789135071899 0.178886292374437 0.171288480368238 0.182634577889949 0.183128731718335 0.172237659254790 0.175456804945055 0.188629590307349 0.176354800254239 0.194040382441232 0.181143261797899 0.173813296456935 0.182769391587077 0.175256128200084 0.171288480368238 1 1|0 +|/ 25811588 25812451 25812006.8 25808081 25812645 + gene protein_coding_gene FALSE TRUE AT1G68720.1 cytidine/deoxycytidylate deaminase family protein similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT5G28050.1); similar to hypothetical protein pc0648 [Candidatus Protochlamydia amoebophila UWE25] (GB:YP_007647.1); similar to Os06g0489500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057673.1); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125) -0.197425867840620 -2.02964064921847 0.0675710913392872 1 1.13643344262828 14.7686882733704 -0.197425867840620 0.0887518953815079
AT1G54110_at 6.41033239620235 5.93981565103039 6.3878590133326 5.93684869483562 6.15016833331415 5.92199789451219 6.98077994118555 6.64374820862458 6.13857513360133 6.30296063752025 5.96257236967147 6.0438282243124 5.97982349972129 6.61069617126436 6.07223372243653 6.48040674362628 6.40498122174395 6.07595432235458 6.37835563953705 0.1785300306648 0.169492213135868 0.181114870081017 0.176938649264248 0.173505690205112 0.183917729990304 0.170810725930473 0.189437768307942 0.177023665928522 0.172123446177295 0.179346368347629 0.171461979141605 0.174755173041672 0.174888212369648 0.174772870948958 0.172223686173743 0.173382412920148 0.182610607685050 0.173840352431407 1 0|1 /|+ 20204486 20205264 20204871.25 20203086 20205363 + gene protein_coding_gene FALSE TRUE AT1G54110.1 cation exchanger, putative (CAX10) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55600.1); similar to Os09g0272500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062740.1); similar to Os08g0533700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062347.1); similar to cation exchanger-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13159.1); contains domain no description (G3D.1.20.5.110) -0.231967833878467 -2.02931538872298 0.0676087621661556 1 1.13596139727877 12.5349983522685 -0.231967833878467 0.132976317664614
AT3G20420_at 4.08519605336656 4.99946973719244 4.93603169067375 4.79394789210177 4.63438152281928 4.4458412962344 3.94695793191626 4.24308269563893 3.85556639355665 3.80916976419812 4.45786697288046 4.18009314708995 4.42994263850466 3.781180396504 3.66466416668896 4.3008118817219 3.82752330997792 3.64044316920496 3.99029383807677 0.229051870679226 0.229727913127242 0.230891236223581 0.236755734268461 0.232161228427245 0.234103407830192 0.23267016035855 0.235673972778807 0.240367204920513 0.229125052964045 0.229212580778899 0.228937158785937 0.227082900397429 0.240093640804405 0.234901874160865 0.228838140206056 0.233987561656019 0.233275548048748 0.229360398028026 3 0|3 /|- 7119404 7120011 7119759.333 7119288 7120925 - gene protein_coding_gene FALSE TRUE AT3G20420.1 RTL2 (RNASE THREE-LIKE PROTEIN 2); double-stranded RNA binding / ribonuclease III similar to RTL3 (RNASE THREE-LIKE PROTEIN 3), double-stranded RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT5G45150.1); similar to Os05g0271300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055061.1); similar to Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Type III restriction enzyme, res subunit; Ribonuclease III, bacterial [Medicago truncatula] (GB:ABD32724.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) 0.267089853819919 2.02786071699549 0.0677774796793202 1 1.13385062372565 8.47077645695898 0.267089853819919 0.171256058865311
AT3G28280_at 0.708741173127636 1.12458082920367 1.36051286323840 1.37178684669016 0.753471782445024 1.16746827103075 0.54054997307118 1.09361997794984 0.94193102454002 0.972859088671895 1.45275250250154 1.16925447172943 1.12984040986822 0.885853149918809 1.07558160100338 0.707222701826303 1.10547111831287 1.31944917880442 0.866115175797128 0.202496008377461 0.203508871637836 0.199204890324373 0.209244768736446 0.211739810379781 0.204767776609162 0.212792330327207 0.201239892535974 0.20715378540477 0.203680568980464 0.206132372066072 0.208079700096106 0.206336690880467 0.204438122587548 0.205316597534195 0.199653561036804 0.208804705040689 0.223812525986273 0.205119909475219 3 3 - 10541885 10542518 10542243.727 10541883 10542808 - gene protein_coding_gene FALSE TRUE AT3G28280.1 similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G28330.1) 0.237573332294472 2.02782855478442 0.0677812144147163 1 1.13380396217186 2.03141475030223 0.237573332294472 0.139556461831520
AT1G03250_at 6.88574779488589 7.10061626869052 7.2314979067831 7.35627997017755 7.69271693152016 7.16843269118534 7.68235398799787 7.73717069819033 6.33619591557262 6.54625729585807 6.66640875840875 6.72767965949704 6.98879020829514 7.21410562371238 6.32672941820403 7.27963606750490 6.5644372431457 6.78273525956332 6.37198052000042 0.183381762434685 0.187545099578496 0.189376720421029 0.181780080497296 0.186421006306769 0.18875014172929 0.188748639067895 0.183902636660162 0.200714538945205 0.191062753449853 0.185855046212238 0.190233684416202 0.185695479250061 0.188696006215886 0.187859731527014 0.181780080497296 0.190658508792636 0.185964769309728 0.19060245081271 1 1|0 -|/ 793597 794580 794060.778 793353 795368 - gene protein_coding_gene FALSE TRUE AT1G03250.1 similar to At1g03250/F15K9_13 [Medicago truncatula] (GB:ABE77455.1); contains domain R3H domain (SSF82708) 0.205715195061547 2.02648124138041 0.0679378404518422 1 1.13184951890214 13.9753319596464 0.205715195061547 0.100850619197647
AT1G62250_at 9.1868252000919 9.03368285545398 9.52410458612727 9.31438277915734 9.67662713955335 9.35415605013061 10.6591386427336 10.3485848895150 9.89090059131656 10.2857216524316 10.0924905975610 9.86759715588024 10.0545091915716 10.1563521036585 9.71198226511268 10.3704341889541 10.2118936854374 10.1173765040590 10.2081969129247 0.0810929288600647 0.0781780425122088 0.0790585582779368 0.0806624869462371 0.0772193685832228 0.0765469616790477 0.079740497014824 0.0751415212938435 0.081651736783811 0.0775343240822751 0.0751465575997335 0.0754002319754468 0.0758552459340492 0.0749674759912192 0.0787634741471174 0.0751025320640234 0.0763120223758278 0.0785746738483931 0.0782635830828867 1 1|0 -|/ 22999287 23000334 22999741.5 22999102 23001278 - gene protein_coding_gene FALSE TRUE AT1G62250.1|AT1G62250.2 similar to Os03g0744700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051239.1) -0.197591924450714 -2.02564367514393 0.0680353790763798 1 1.13063478749170 19.7377390247222 -0.197591924450714 0.0895659540608617
AT4G30490_at 8.74452707087789 8.63035472171616 9.0437657871536 9.01039942754878 8.75981792748162 8.2938778377253 8.3159225841375 8.21217348212103 7.48110405767645 7.73599921069149 7.80368616689313 7.74428901714946 7.77685102464113 7.43601547309908 7.44877318384717 7.71802288359077 8.10444411000885 7.9682632158995 7.76902521451862 0.174111686197504 0.172007498738359 0.175266076338633 0.184056003878986 0.184499652070506 0.17750785348836 0.183126908184887 0.179989113413665 0.196038668037982 0.172759647709639 0.176415436492001 0.171158768537002 0.176680440701303 0.181009444612210 0.176746487927232 0.172634282695285 0.178184066487002 0.169807280314405 0.175683075245408 4 4|0 -|/ 14899235 14900057 14899742.8 14899040 14902150 - gene protein_coding_gene FALSE TRUE AT4G30490.1 AFG1-like ATPase family protein similar to ATPase [Arabidopsis thaliana] (TAIR:AT4G28070.2); similar to PREDICTED: similar to lactation elevated 1 [Gallus gallus] (GB:XP_419799.2); similar to Os08g0265500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061401.1); contains InterPro domain AFG1-like ATPase; (InterPro:IPR005654) 0.194610543513231 2.02560661499575 0.0680396979415274 1 1.13058104338582 16.3323978358552 0.194610543513231 0.0851338690129203
AT3G46830_at 7.45565354418406 7.63751502176093 7.34437374900542 7.28150025254579 8.00856923456153 7.68186144092921 7.78228508639865 7.7480883476577 7.37148678154292 6.44026898759714 7.56080657939448 7.4376331825095 7.56173089876048 7.3970671664659 7.38427523196284 7.07289283859871 6.90195081723227 7.1021295638741 6.767589309404 0.131816919369990 0.131816919369990 0.139889457015001 0.133723447200985 0.134104418808831 0.135394075715948 0.134732789545290 0.131816919369990 0.139583629729079 0.143389176789117 0.138107079151230 0.138867801419748 0.140073332386975 0.136464281242584 0.135104490582087 0.133384386328504 0.133434189337264 0.135195546380968 0.141639050625921 3 3 - 17257691 17258141 17257926.636 17257329 17259682 - gene protein_coding_gene FALSE TRUE AT3G46830.1 AtRABA2c/AtRab11A (Arabidopsis Rab GTPase homolog A2c); GTP binding Identical to Ras-related protein Rab11A (RAB11A) [Arabidopsis Thaliana] (GB:Q96283); similar to AtRABA2d (Arabidopsis Rab GTPase homolog A2d), GTP binding [Arabidopsis thaliana] (TAIR:AT5G59150.1); similar to Ras-related protein Rab11C (GB:Q40193); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.182859880630960 2.02408305483873 0.0682174712018304 1 1.12837193784871 14.6985270734793 0.182859880630960 0.0658822702909593
AT3G51410_at 0.479774150650699 0.397518480674152 0.329725736554448 0.643068216239839 0.749832548444416 0.543329196205096 0.592547543856863 0.276835564449745 0.194122932784608 0.166121196154147 0.337541700588183 0.278871850031825 0.454689388373645 0.318865538235298 0.778819944673132 0.188333601200336 0.266485116285858 0.489482420187416 0.0263895474559921 0.214735160025962 0.216305402337356 0.214735160025962 0.215362037574491 0.217916748270321 0.214763598394871 0.216211630201761 0.217412098942607 0.216676361716219 0.223237250435111 0.214857665477014 0.215512227645271 0.214735160025962 0.218804342162809 0.223125302342290 0.217078350934421 0.220341120445179 0.218828253192091 0.217243438222788 3 3 - 19092336 19092861 19092619.909 19092236 19093191 - gene protein_coding_gene FALSE TRUE AT3G51410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35680.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) 0.195039146134232 2.02373621791854 0.0682580019120155 1 1.12786913006286 0.760585973173679 0.195039146134232 0.0860531074263405
AT1G48300_at 11.6928826926075 11.8107672913184 11.6582137027109 11.6393664496556 12.5058035889917 12.3162068464691 12.1632027079384 12.1408428127943 12.3255879766441 12.7431071551168 12.1834509654547 12.1256810377785 12.4019153607263 12.3050903287419 11.8282072872020 12.2978735641254 12.1648315984670 11.9453794976917 12.6597213760010 0.0807739393023244 0.078277743774865 0.0828126397383904 0.0858011640196674 0.079402756778639 0.0815004306458371 0.0794824989727575 0.0788196258432818 0.0801432512321437 0.0784278855781549 0.080598929518659 0.0781347750151723 0.0781528059148034 0.079340313602685 0.0807518395325125 0.0775352540142352 0.0823290011710131 0.0812945249614649 0.0786846228856521 1 1 + 17851411 17851980 17851687.909 17851024 17852232 + gene protein_coding_gene FALSE TRUE AT1G48300.1 similar to soluble diacylglycerol acyltransferase [Arachis hypogaea] (GB:AAX62735.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.170805680052516 -2.02363823141834 0.0682694565194639 1 1.12772708575676 24.3572570320328 -0.170805680052516 0.0389657035143214
AT4G00370_at 9.37190500421192 9.39955998627114 9.35225914920525 9.23101429145176 9.11041371245631 9.08497269134104 9.75890284565494 9.70486323045166 8.91021492929957 9.39962108239098 8.99785196826017 9.33735402673006 9.1738402085149 9.13120764728971 9.18197203721857 9.44701374310866 9.39820653193334 8.84815017386999 9.1653128468701 0.111683390246636 0.112816748872560 0.121681509581908 0.115157935667365 0.112515167927002 0.124778963060283 0.115008217002562 0.112361443842016 0.117332979352885 0.122236216437082 0.112602618592393 0.114027413168004 0.116144210858506 0.111683390246636 0.117386224544392 0.115685901839753 0.117842334780042 0.122297736433316 0.120440674993658 4 4|0 -|/ 163177 164447 163843.125 162897 166357 - gene protein_coding_gene FALSE TRUE AT4G00370.1 ANTR2 (anion transporter 2); organic anion transporter similar to inorganic phosphate transporter, putative [Arabidopsis thaliana] (TAIR:AT2G29650.1); similar to Na+/Pi transporter [Thellun (GB:ABK51380.1); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE91392.1); similar to Os09g0570400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063986.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.166538108135848 -2.02320019920177 0.068320684458472 1 1.12709213415531 18.5506526113651 -0.166538108135848 0.023874419168723
AT4G16210_at 8.1468172898742 8.04463280344061 8.09105519997988 8.03993354294039 8.62777363415255 8.26735448194244 7.79795259351704 7.33986591584078 6.35258283710832 6.10975771740329 5.98178593951025 5.38805686557671 6.47756199939669 5.63349315454984 6.07294967223558 6.0857858153174 6.49742289222088 6.94442828263694 5.97498300233897 0.237835166104414 0.237472039842117 0.236822963497002 0.234136329969846 0.238730148170849 0.237734284610475 0.234136329969846 0.235932538170827 0.244718693892866 0.234444892163496 0.24090377017493 0.239564984507963 0.234136329969846 0.238827274495412 0.236214107246211 0.240052142247007 0.244164438655635 0.234982989686158 0.237759613691105 4 4 - 9177074 9177826 9177592.909 9176688 9178063 - gene protein_coding_gene FALSE TRUE AT4G16210.1 enoyl-CoA hydratase/isomerase family protein similar to naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G60550.1); similar to putative enoyl CoA hydratase [Cicer arietinum] (GB:CAB61740.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.206811561408003 2.02308533185817 0.068334124175752 1 1.12692563677668 14.1849032310264 0.206811561408003 0.102789293483413
AT3G09860_at 11.1210231151132 11.0480589145581 10.9402028105786 10.9543179144015 11.1560288122576 11.0118406067548 10.7060801364630 10.8765466375815 10.8326550084370 10.9480027796767 11.2465488187391 11.1146148856586 11.2196781290795 11.0827724062561 11.2978388513969 11.0841493708468 11.0968572745158 10.8542437503942 10.7978853382196 0.106585805983438 0.0994441586258656 0.112425305208283 0.109707060041181 0.0994441586258656 0.114954833663532 0.106296684609561 0.0994441586258656 0.116600819120677 0.0994441586258656 0.103693994790890 0.104833345163369 0.099812816075963 0.106315557873281 0.10041182402325 0.101697664413565 0.115256569048397 0.103740977335733 0.101016882289784 3 3 + 3026174 3026269 3026221 3026060 3027239 + gene protein_coding_gene FALSE TRUE AT3G09860.1 unknown protein 0.171371947742797 2.02305554184158 0.0683376100741356 1 1.12688245750103 21.9688135241162 0.171371947742797 0.0407219640671706
AT3G50630_at 5.78914554604303 6.09588034963287 5.5840467392944 5.51743154570217 6.3478186568736 6.05651121575171 6.1687305231456 6.08373561159443 5.09600616275447 6.02463382800723 5.25641952032322 5.55963892874217 5.86835598682784 5.62881511644917 4.98271885257415 6.09003214850329 5.5358006150488 5.52065999129383 6.20108454651015 0.201172760432951 0.19685542027761 0.197091983748903 0.201220902314619 0.204799654322315 0.212580905764375 0.19685542027761 0.210332386471639 0.224172102498559 0.19685542027761 0.203922861960059 0.196970960799742 0.19685542027761 0.203082052551393 0.207765537198739 0.199074479909834 0.211186591125994 0.205107875896943 0.199149521575789 3 3 + 18811593 18812144 18811785.727 18811361 18812568 + gene protein_coding_gene FALSE TRUE AT3G50630.1 ICK2 (KIP-RELATED PROTEIN 2) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation. similar to ICK1 (KIP-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G23430.1); similar to cyclin dependent kinase inhibitor [Pisum sativum] (GB:BAB20860.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) -0.18826200115941 -2.02250857645467 0.0684016432239874 1 1.12608970127142 11.6200191855352 -0.18826200115941 0.0755533720003928
AT3G28130_at 5.72686419715954 5.90990882423635 6.1041430575621 5.76985392059716 6.67165447568855 6.02487349754299 7.68133720366282 7.38570714749117 6.75632405595313 7.3406541160187 7.29489768431552 7.47126343553675 6.9405784563712 7.38114446672622 6.83234276738424 7.24597368540285 6.82094548194361 6.62058615746142 6.95258996091913 0.191799053189216 0.183271436747841 0.187170319619523 0.187904438698629 0.181466902977977 0.184111719714912 0.184441750212701 0.185030181898501 0.199868631020663 0.182385122815666 0.183570178327136 0.180259804755364 0.184808048381104 0.185617319121846 0.182801311826089 0.180259804755364 0.180607682164339 0.191144433319312 0.186994668912407 3 3 + 10469132 10469878 10469439.545 10466753 10470148 + gene protein_coding_gene FALSE TRUE AT3G28130.1|AT3G28130.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28100.1); similar to Os01g0803300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044551.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); similar to putative nodulin MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAB92246.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28100.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.236939649680346 -2.02189426202689 0.068473627969196 1 1.12519943362228 13.4555374044208 -0.236939649680346 0.139625981546558
AT3G14160_at 2.95947043582328 2.88044755493046 3.6490755959991 3.0631319867111 3.25711515439489 3.10641429561328 2.86040362024472 2.49913827224908 2.70194512398672 2.81491199089896 2.31945647374185 2.32095586907896 2.63194796241188 2.48192814682974 2.49484147024475 3.06965065645542 2.79723099814881 2.71145709447335 2.36706405455443 0.199702296349708 0.198870997822508 0.194602469173504 0.200426014585963 0.19311730132051 0.213496469662802 0.200186948896833 0.19311730132051 0.198607832720706 0.19519978195986 0.194874678297160 0.197768109699782 0.202066997100150 0.208010675153322 0.199015638207319 0.199341538877652 0.204567873236927 0.205139023533043 0.202287312454495 3 3 + 4694529 4695156 4694748 4694070 4695611 + gene protein_coding_gene FALSE TRUE AT3G14160.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G14140.1); similar to oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99549.1); similar to Os03g0816500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051693.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.22226457407205 2.02046520493490 0.0686413582349861 1 1.12312885627780 5.65010326803064 0.22226457407205 0.122710026044898
AT2G32770_at 1.91468307266958 1.54528645036222 1.62881156483074 1.69449263119135 1.69582321536923 1.80620252331578 1.64830133656034 1.57538834507903 2.00044670744152 1.48880352043852 2.44080533819318 2.24543357737708 1.83400551539018 2.38698108357893 2.50576743813979 2.30510132887419 2.19248167379468 2.22567474147269 2.31356531886526 0.182405046740114 0.183072258083041 0.184283003481463 0.179882203760208 0.178467408213179 0.188467704044530 0.179778443313956 0.191118571773102 0.193764642181184 0.186404023354246 0.181461205856165 0.182369598215690 0.181697104643746 0.189828339754617 0.184431089762256 0.178340761210914 0.183732558977395 0.181614344150373 0.187215007908896 2 2 + 13904518 13905219 13904839.364 13902902 13905354 + gene protein_coding_gene FALSE TRUE AT2G32770.1|AT2G32770.2|AT2G32770.3 ATPAP13/PAP13; acid phosphatase similar to ATPAP15/PAP15 (purple acid phosphatase 15), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G07130.1); similar to phytase [Medicago truncatula] (GB:AAX71115.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)|similar to ATPAP15/PAP15 (purple acid phosphatase 15), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G07130.1); similar to phytase [Medicago truncatula] (GB:AAX71115.1); contains InterPro domain Purple acid phosphatase, N-terminal; (InterPro:IPR008963); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.184088585348237 2.01960277296839 0.0687427692071453 1 1.12187955298552 3.78927523543113 0.184088585348237 0.0688461311719103
AFFX-BioDn-5_at 9.83661361803375 9.61765522142893 10.0639633892767 9.78078074586996 9.31726534936988 9.71333610049157 9.47594426453601 9.85338853396433 0.440866295361453 0.513769504728033 0.72411382796088 0.676478110963599 0.994251716658417 0.551229467950304 0.781213264215085 0.786961800713564 1.12973065907996 1.09309746841688 0.354140695897533 0.339490402377475 0.335492106688492 0.337807115888678 0.33817580877318 0.335398556931042 0.336761881102452 0.330901990080619 0.339654454856537 0.326535971731859 0.326535971731859 0.327655178233962 0.32719075725981 0.328656064330746 0.327905600692731 0.327554798038252 0.326985335220575 0.326535971731859 0.327683105936143 0.326723194562742 NA NA NA NA NA FALSE FALSE 0.214405847130218 2.01944793764307 0.0687609907206369 1 1.12165528403306 10.3465650886166 0.214405847130218 0.113145384466055
AT3G02770_at 8.81794311699787 9.06007630120482 9.07960381555714 9.10269047675057 8.82988355015097 8.64465691445436 8.10956693346535 8.13321054391443 8.5852142386051 8.1821826388518 8.44953025045262 8.26095181485469 8.3231091961963 8.51154031826623 8.14621549158093 8.53189589211623 8.33053155769884 8.16840265741265 8.3490516941865 0.158554652324449 0.150113918267232 0.152689012773379 0.154182581353793 0.149970561348284 0.162695308643545 0.153706191847331 0.156975669169503 0.167202145939027 0.166556722499251 0.148682719132276 0.158596395430305 0.149790667128039 0.154185547045640 0.149056334470643 0.145540667775438 0.155187440216873 0.159179280193025 0.149786883256581 3 3 - 601043 601856 601395.091 600900 602266 - gene protein_coding_gene FALSE TRUE AT3G02770.1 dimethylmenaquinone methyltransferase family protein Identical to Regulator of ribonuclease-like protein 1 [Arabidopsis Thaliana] (GB:Q9M8R9); similar to dimethylmenaquinone methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G16450.2); similar to Dimethylmenaquinone methyltransferase [Medicago truncatula] (GB:ABE89807.1); contains InterPro domain Protein of unknown function 1935; (InterPro:IPR010203); contains InterPro domain Dimethylmenaquinone methyltransferase; (InterPro:IPR005493) 0.176066044386913 2.01944648336568 0.0687611618860771 1 1.12165317763910 17.0784147921637 0.176066044386913 0.0530658517938446
AT2G27320_at 1.04022560768022 1.19272864069921 1.65788939392095 1.60809209308995 1.08174407749475 1.10682981777168 1.25208438330376 1.42594646041977 0.875146775466057 0.898309373089897 0.804532934603027 0.978444517444069 1.01653625980877 1.02683612443777 1.05254558957205 1.39729444779322 0.998455506352179 1.31331607697610 0.827450705065294 0.186315623595213 0.19069340126853 0.186315623595213 0.191206791356998 0.188224272839003 0.18906820228727 0.186585079094599 0.192008153443213 0.196278727124641 0.198280465543335 0.187398689687782 0.192405379960935 0.193717082769167 0.192262614117489 0.203792754539130 0.189000935070265 0.186661666944891 0.186315623595213 0.196381991345594 2 2|0 +|/ 11700678 11701675 11701317.8 11699968 11701760 + gene protein_coding_gene FALSE TRUE AT2G27320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38255.1); similar to hypothetical protein 25.t00048 [Brassica oleracea] (GB:ABD64955.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) 0.171209401729955 2.01924441472748 0.068784948828858 1 1.12136050476791 2.26592462596278 0.171209401729955 0.0411689234301109
AT3G06780_at 6.90757164391733 7.19210412399554 7.29352004196557 7.32575316976484 8.176998321829 7.2325087195125 7.78873451861564 7.42717957077716 7.1135207368486 7.12260066611846 7.66513471339352 7.26464435406912 7.78095038424737 7.91337252914646 6.80600480354211 7.95563497416183 7.56498553223521 7.33213734499303 7.24755343408535 0.203183478070280 0.181305247858652 0.186953575431395 0.184332068064509 0.182388933186534 0.192722395046664 0.185131409026330 0.186274436078639 0.199753449821243 0.183603465836914 0.186705028597718 0.185288537507113 0.179779330203099 0.181595039190604 0.193582137903528 0.179779330203099 0.200298286016893 0.201250362938352 0.188381166007752 3 3 + 2143661 2144216 2143885.182 2143494 2144527 + gene protein_coding_gene FALSE TRUE AT3G06780.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G75550.1); similar to RNA-binding re (GB:YP_729253.1); similar to Os01g0346700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042964.1) 0.276215366365503 2.01833548614471 0.0688920406773096 1 1.12004417328633 14.7663377763761 0.276215366365503 0.181895212245172
AT3G23660_at 4.14358576920817 3.89027491897969 3.48345347658542 3.72108346670321 3.84365590154888 3.17234036507211 3.79472526694641 3.28992856226691 3.17176057855061 3.45306063448824 4.37830030951298 4.46371024957878 3.85295225601235 4.44993595869571 4.19297592901206 4.18138572978555 4.0897166629395 3.57493291024500 3.63034441041233 0.194201642916944 0.196959395168802 0.194438435535889 0.200080103176689 0.194687171609249 0.192749791124292 0.192763861677909 0.198402378595315 0.189864197917231 0.191216489595393 0.198858683212499 0.197702332768164 0.199499230331077 0.196915991419943 0.189864197917231 0.192458372374297 0.189864197917231 0.201857107120474 0.193521085027574 3 3|0 -|/ 8513693 8514515 8514149.222 8513464 8517797 - gene protein_coding_gene FALSE TRUE AT3G23660.1 transport protein, putative similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.2); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Vesicle coat complex COPII, subunit SEC23 (ISS) [Ostreococcus tauri] (GB:CAL55059.1); similar to hypothetical protein UM01624.1 [Ustilago maydis 521] (GB:XP_757771.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.252552441349732 2.01810008214557 0.0689198019215867 1 1.11970329462203 7.45056961185042 0.252552441349732 0.157291235721801
AT3G60370_at 7.35116094243208 7.63297371375155 6.86936161024174 7.3948570950468 8.20219719311297 7.43035069127198 7.89933173606041 7.68795948095296 7.80338318427475 7.65271356519826 7.25070447504989 7.43258289310344 6.93506601221318 7.44643526022248 7.66863224679719 7.29635495427395 6.97960134449516 7.37295863288059 7.53441883434409 0.186597515133234 0.180845837657776 0.185172461240076 0.197321750465091 0.182299025667523 0.180754364663920 0.184021825973042 0.180863436591353 0.186833375827081 0.177187380682566 0.177301601717495 0.181700328136240 0.183056114198479 0.177187380682566 0.184176810370817 0.179334408873133 0.209974822642824 0.183594434654339 0.181105261702966 3 3|0 -|/ 22325980 22327147 22326552.6 22325707 22327525 - gene protein_coding_gene FALSE TRUE AT3G60370.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT2G43560.1); similar to Os07g0490400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059674.1); similar to FKBP-type peptidyl-prolyl cis-trans isomerase (ISS) [Ostreococcus tauri] (GB:CAL51684.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.267189019053547 -2.01796897784440 0.0689352676236792 1 1.11951345491698 15.0391726438514 -0.267189019053547 0.172707270896816
AT2G42710_at 3.38771891834011 4.06678378177704 4.01294509186811 3.83314021552911 3.66509931969338 3.84029381507279 4.89271494870685 4.75194073561057 3.18659892523203 3.74312965594992 3.29322792082321 3.25391485867817 3.48466976857714 3.10865186105724 3.55950771165527 3.50455210946688 3.68088785623932 3.15123322737195 3.25415805980063 0.258180409988707 0.259885637169642 0.263260766028615 0.273515540183527 0.258180409988707 0.263994010984046 0.267053222064813 0.260302960085623 0.271544852442516 0.258674422592510 0.258180409988707 0.258180409988707 0.261206831701734 0.273167572801671 0.266403646625346 0.262768987403254 0.262622822721219 0.2664874273578 0.264171089873454 2 2|0 +|/ 17789738 17790832 17790228.222 17789385 17792140 + gene protein_coding_gene FALSE TRUE AT2G42710.1 ribosomal protein L1 family protein similar to ribosomal protein L1 family protein [Arabidopsis thaliana] (TAIR:AT3G63490.1); similar to Os06g0546400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057819.1); similar to 50S ribosomal protein L1 [Stappia aggregata IAM 12614] (GB:ZP_01548596.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143); contains InterPro domain Ribosomal protein L1, bacterial and chloroplast form; (InterPro:IPR005878) -0.225984100830836 -2.01685351562244 0.069066984555578 1 1.11789846077944 7.44343437560533 -0.225984100830836 0.127635220216306
AT4G19230_at 2.37069485701151 2.55945032669739 2.35877893343095 2.49583388375106 2.00022046090470 2.19592809017312 2.41201833333477 2.67029209020866 2.54186751523106 2.60295528088818 2.34447753259414 2.50800189360089 2.36824916057832 2.66595091000952 2.15334136603833 2.31211676444227 2.06132884582313 2.77870500847978 2.43432186857609 0.216340956035301 0.215928201517303 0.224264613818012 0.228208085594834 0.217181292467021 0.224491160604861 0.225015727015523 0.219974894133951 0.225127537780428 0.220940331278988 0.218626782102023 0.226460277904852 0.229618097621274 0.215860123466554 0.220324796694147 0.217668569838478 0.223906470445209 0.217496914241708 0.220606716616341 4 4 + 10522571 10523494 10523140.364 10521390 10523972 + gene protein_coding_gene FALSE TRUE AT4G19230.1|AT4G19230.2 CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. CYP707A1 appears to play an important role in determining the ABA levels in dry seeds. Gene involved in postgermination growth. Overexpression of CYP707A1 leads to a decrease in ABA levels and a reduction in after-ripening period to break dormancy. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340.1); similar to ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum] (GB:ABA55732.1); similar to (+)-abscisic acid 8'-hydroxylase [Oryza sativa (indica cultivar-group)] (GB:ABI64254.1); similar to abscisic acid 8'-hydroxylase [Phaseolus vulgaris] (GB:ABC86558.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340.1); similar to ABA 8'-hydroxylase CYP707A1 [Solanum tuberosum] (GB:ABA55732.1); similar to abscisic acid 8'-hydroxylase [Phaseolus vulgaris] (GB:ABC86558.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.183891839725383 -2.01590666137676 0.0691789767398019 1 1.11652786393720 4.84560361698614 -0.183891839725383 0.0690961778454193
AT3G53190_at 3.3964383927945 3.80889172088706 2.90454035390152 2.81844226003979 2.40553652247586 2.97331262388382 3.21342947222156 3.65749095435279 4.28694208233274 4.73669525211632 4.55061159663152 5.64172675920528 3.91244770067146 5.08801401536647 6.28071652526107 4.6871026032343 4.55013030028437 4.74198862828944 4.98266575398292 0.264850346935710 0.261060770459070 0.264417747542534 0.259987043684120 0.264666526771422 0.265058197843294 0.270865197616187 0.270247165138897 0.262610116755723 0.261546027377404 0.258409172751329 0.268172135243849 0.257450973435384 0.265045492261515 0.270230030518231 0.257450973435384 0.257450973435384 0.257552218643895 0.259285602159836 3 3|0 +|/ 19727563 19728473 19728065.4 19724906 19728573 + gene protein_coding_gene FALSE TRUE AT3G53190.1 pectate lyase family protein Identical to Probable pectate lyase 12 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9SCP2;GB:Q8LFH8); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G04310.1); similar to pectate lyase 12 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54096.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:AAK54283.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.240390062507367 -2.01444113032585 0.0693526524795658 1 1.11440698076119 7.9474402687006 -0.240390062507367 0.144486750626484
AT1G33870_at 1.39818554624258 1.37817312409185 1.05026171672956 1.72394490764552 1.27981505257811 1.56567820282475 1.44755418669919 1.65477735748371 1.66676012019209 2.19739377534124 1.60962268484787 1.67743342961605 1.71749199052178 1.3456169932539 1.40411383101946 1.56367578226406 1.85990314788596 1.79003417238646 2.17872348740195 0.189589232654980 0.195771038223858 0.191343762607235 0.191351210319072 0.190076623234920 0.191526724459565 0.192648471068967 0.203676489841243 0.20902809263535 0.196101400225442 0.191413903146248 0.191918356233624 0.194756240202649 0.194725719137574 0.196409341509075 0.189662135636993 0.190887058979506 0.197702185760842 0.197578255457619 1 1|0 -|/ 12301704 12302128 12301974.5 12301305 12302447 - gene protein_coding_gene FALSE TRUE AT1G33870.1 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative similar to avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative [Arabidopsis thaliana] (TAIR:AT1G33900.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) -0.229026770344418 -2.01339804939136 0.0694765135532173 1 1.11289783749218 3.25493824426334 -0.229026770344418 0.131670460477378
AT1G11740_at 2.96401972441838 2.65089743013177 3.30238006535927 3.00033010786569 2.47506434914788 2.84950297018775 2.62017808477101 3.08052118054641 3.33325017563959 2.9504039885038 3.41842960155425 3.48359997254406 3.94348677905400 3.04741996321683 3.38551784283121 2.95073511772804 3.33728685214288 3.72656853720767 2.83294058505949 0.253086229942409 0.240887313240408 0.243031811415817 0.247984161163921 0.246900727512840 0.260372155327237 0.247295041590599 0.248978270388879 0.252579064442214 0.251275609303143 0.261584866710499 0.240887313240408 0.24112216340549 0.248990647452240 0.255343191363596 0.240887313240408 0.241702713964491 0.254295200005195 0.240887313240408 1 1 - 3963452 3965146 3964609.909 3963277 3966824 - gene protein_coding_gene FALSE TRUE AT1G11740.1 ankyrin repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62050.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31026.1); similar to Os07g0512100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059766.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.225340467528582 2.01337883588472 0.0694787970106497 1 1.11287004210237 6.09310948889643 0.225340467528582 0.127333404637935
AT2G44060_at 9.72334524778478 9.9003215614566 9.7742533134132 9.893026345632 9.66694900401418 9.45642869439921 10.4487272953577 10.4183946294034 10.2005154374974 10.5162025247428 10.5698797163001 10.5298647897358 10.2054817306492 10.4951501482095 10.5142143016823 10.3150614470635 9.97188003564677 10.3240260965655 10.1556950148155 0.0828233906093028 0.0815445935465564 0.0828708820663892 0.0822920306906073 0.0800517313687628 0.0911150791196761 0.0792527579908015 0.0856171552467467 0.0858207742839355 0.0838225028761034 0.0817042680461361 0.0819393275088941 0.080945701143778 0.0858818304717713 0.0833691004350249 0.0817874082359346 0.093478443083042 0.082218148342275 0.0832294137942492 2 2 + 18234437 18234893 18234653 18233393 18235227 + gene protein_coding_gene FALSE TRUE AT2G44060.1|AT2G44060.2 late embryogenesis abundant family protein / LEA family protein similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to salt tolerance protein [Sesuvium portulacastrum] (GB:AAV71142.1); contains InterPro domain Late embryogenesis abundant protein 2; (InterPro:IPR004864) -0.175071193294808 -2.01294376637757 0.069530522301021 1 1.11224067367511 20.2384303158911 -0.175071193294808 0.0521082852379143
AT1G55780_at 2.9296378911578 3.33086846492102 3.83358357906897 4.49076594311898 2.55510019847477 2.500704574164 2.17744568972852 2.24251258444351 2.65492597767462 2.43864880957269 2.10494577405398 2.27081087605865 2.29055964734996 1.99332810793278 2.10646216913132 1.90567628024779 2.38865914345601 2.60892485195752 2.17119137715279 0.228462816464683 0.228441076980847 0.225470295939573 0.240361693409507 0.227881624291346 0.227240486555397 0.226406417490928 0.223814789678559 0.223549058478287 0.226833072665151 0.227102077575788 0.225787095923130 0.224990056621549 0.222233200414521 0.22311470347238 0.225921297655642 0.224955402136196 0.223915631722618 0.222606403980604 1 0|1 /|- 20856353 20856661 20856492.8 20856351 20856846 - gene protein_coding_gene FALSE TRUE AT1G55780.1 heavy-metal-associated domain-containing protein similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT3G20180.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17465.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.231002275475385 2.01272900715513 0.0695560682537195 1 1.11193002482059 5.3227071545048 0.231002275475385 0.134055074612121
AT4G10670_at 3.14913626913344 2.67485549023480 3.01108818627042 3.06733756033542 2.76917009968601 3.17237185873948 2.68972146979164 2.53157734449051 3.11849616019244 3.17302446286264 3.80444618463288 3.06640780727818 2.70166547749995 3.37772989299071 3.15002622268630 3.17419716439895 3.59162338802368 3.72192030543546 3.13600688226199 0.249058077294811 0.238207363301000 0.243671345892463 0.237904796115550 0.246591383206780 0.247389654744181 0.240345969301157 0.237188534256651 0.255074412156477 0.245054456070273 0.244869534701387 0.236161370162848 0.237078398174746 0.24132841199475 0.242318773666651 0.239998079365148 0.250383650437655 0.237704165760573 0.254463058222431 4 4 + 6585556 6586234 6585892.9 6584723 6586258 + gene protein_coding_gene FALSE TRUE AT4G10670.1 GTC2 (GLOBAL TRANSCRIPTION FACTOR GROUP C2) Homologous to yeast SPT16, a general chromatin factor required for transcription similar to SPT16 (GLOBAL TRANSCRIPTION FACTOR C), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT4G10710.1); similar to Os04g0321600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052463.1); similar to FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (Global transcription factor group C protein 102) (GB:Q8H6B1); contains domain FAMILY NOT NAMED (PTHR13980); contains domain TRANSCRIPTION REGULATION (PTHR13980:SF3) 0.212331084887238 2.01151483876054 0.0697006608812852 1 1.11017398480989 6.11616289673886 0.212331084887238 0.111574969309508
AT3G05070_at 6.54683757835898 6.89510296329516 6.57686325703389 6.99465432577733 7.30258724206623 7.06991372988078 7.22467544979174 7.08417782651175 6.7457504122363 6.4195591332588 6.333966563873 6.0730606763673 5.85663848153695 6.05067798252326 6.31227813020122 6.10133490392127 6.00670765996618 5.95903791700386 6.48416169822594 0.206783220355907 0.195317824401350 0.192431033410033 0.192824618833451 0.186896056245782 0.196821402615107 0.197504611713491 0.192178216537017 0.192213445520565 0.202225954649889 0.190270682273007 0.189327471206378 0.190087597323030 0.193433266788301 0.194403156397707 0.186896056245782 0.194620615027856 0.187032397283732 0.196169699148772 3 3 + 1416518 1417503 1417002.636 1416154 1417812 + gene protein_coding_gene FALSE TRUE AT3G05070.1 similar to coiled-coil domain containing 12 [Danio rerio] (GB:NP_001003589.1); similar to Os06g0730800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058658.1); contains InterPro domain mRNA splicing factor, Cwf18; (InterPro:IPR013169) -0.207402387141363 -2.0110267904904 0.0697588607184999 1 1.10946824634486 13.2801198152551 -0.207402387141363 0.105224450830557
AT3G50160_at 1.30120623843578 1.26974808476277 0.886114486289684 1.29232284072490 1.23742545557790 1.06546116650681 1.1960712594472 1.15177810206452 1.39558474666906 1.50588667334387 1.18781573658598 1.02220295121435 1.18542199989422 1.2259541189714 0.735560418348138 1.15721970503689 1.37124883851842 1.69790778156258 1.49165771715224 0.187616743164459 0.187336014490847 0.191508822119099 0.185836603283859 0.190229465964039 0.194691018408597 0.188676761396453 0.186885008124825 0.192365500790936 0.187273689697421 0.186871167161787 0.191027168422619 0.186777120309182 0.189928815263754 0.191700828434368 0.190591067078491 0.192635742773613 0.194783074861252 0.192353967266873 3 3 - 18609648 18610608 18610023 18609412 18611992 - gene protein_coding_gene FALSE TRUE AT3G50160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50150.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.187914934595652 -2.00996244201132 0.0698859422671201 1 1.10792939439667 2.50616236563697 -0.187914934595652 0.0769127125696171
AT4G10300_at 10.4794576375430 10.4232209819128 10.3668938932898 10.3708816510295 10.5125183563674 10.3341240770361 11.1032815015845 10.8966134620567 10.6918994198813 10.7904589641362 10.7098235890535 10.6713181297097 10.5453441015324 10.6907781582181 10.7411019113195 10.8073270697863 10.6937899641568 10.6668730574111 10.6402491534843 0.0781629469668978 0.0737820445821797 0.0790382553055005 0.0762537698799902 0.0747171346508766 0.0775741642850521 0.0767679262105621 0.0789359026088222 0.082558439678402 0.0760441453825092 0.078873817285486 0.0772186034995795 0.0737820445821797 0.0771590252319898 0.0773895391367998 0.0742897920379545 0.082272976691444 0.0744773891473755 0.0770305444436261 4 4|0 +|/ 6384560 6385885 6385121.8 6384458 6386185 + gene protein_coding_gene FALSE TRUE AT4G10300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04300.1); similar to Os04g0445200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052900.1); similar to Cupin, RmlC-type [Medicago truncatula] (GB:ABE82642.1); similar to OSIGBa0140O07.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67236.1); contains InterPro domain Protein of unknown function DUF861, cupin_3; (InterPro:IPR008579); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313) -0.173140124764538 -2.00977316723291 0.0699085640619039 1 1.10765577255388 21.2600391168437 -0.173140124764538 0.0482430533306258
AT3G42460_at 1.28051388719040 1.64773833900101 1.46303274573229 1.63817069025204 1.26593631210502 1.21761764328848 1.55842814459449 1.41391116962637 1.88962094206073 1.95263492227071 1.38507409706093 1.60037714309079 1.62559973542777 1.62462195583904 1.64006504887596 1.65947728717819 2.04621461979436 1.56105053484813 1.97036370968211 0.218909523049199 0.222610737288560 0.223347236253032 0.221513903917311 0.220074501350771 0.220393945036785 0.222312831679834 0.223222044626350 0.226840970441870 0.218206718918694 0.221496389329788 0.221963764658597 0.225150319856547 0.220926666487258 0.225935928177419 0.222370412034282 0.218206718918694 0.218206718918694 0.220971104923557 3 3|0 -|/ 14601388 14602182 14601808.375 14601277 14602206 - gene protein_coding_gene FALSE TRUE AT3G42460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05570.1); similar to hypothetical protein 31.t00082 [Brassica oleracea] (GB:ABD65101.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.186844171249365 -2.00965420488049 0.0699227857442447 1 1.1074838020225 3.22584357185822 -0.186844171249365 0.0751836275572802
AT3G51110_at 5.01272630450164 4.72120377114313 4.89958599147019 4.53695964308115 5.64099125297969 5.60040398700013 4.77057145627145 4.5965344381885 3.23185980619879 2.86155308759372 2.98443548512386 2.66188721313605 3.40786287620347 2.90040871473462 2.73461115620231 3.03972948169406 3.64858725746388 3.31224156758552 3.18535773008651 0.236292067235842 0.235368859766594 0.237614020889593 0.237025064901202 0.232016244545306 0.251358023556923 0.232711252236902 0.23498441624149 0.242581914190193 0.234482277812484 0.240766711865398 0.234972377585938 0.232016244545306 0.234063633212763 0.241125461316334 0.233640289134841 0.236146675197376 0.232016244545306 0.234928575247011 3 3 + 18995344 18995887 18995586.091 18994606 18996828 + gene protein_coding_gene FALSE TRUE AT3G51110.1 crooked neck protein, putative / cell cycle protein, putative similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G41770.1); similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G45990.1); similar to Os05g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055097.1); similar to hypothetical protein LOC549649 [Xenopus tropicalis] (GB:NP_001016895.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.193761576915788 2.00910858897534 0.0699880475981109 1 1.10669511928969 8.06194411073497 0.193761576915788 0.086253379417238
AT3G06740_at 3.88638402758987 4.26386153220067 3.68021175229650 3.84267853851931 3.71160132871333 3.97792707939385 4.73917818985234 4.55023927808261 4.60740910557492 4.30131869751637 5.30680599971964 5.37446311959229 4.22099310650015 5.31863693867139 4.93261903667559 4.37132750633205 4.41212274151556 4.56168128988294 5.03852557318164 0.191549759662881 0.197842481421504 0.198995085135251 0.194541668885263 0.194413587199651 0.195767397119805 0.195112295611034 0.199691401098774 0.199165500451971 0.192870177654224 0.193240774887850 0.193747770076889 0.195916804471912 0.20265355845818 0.199681632706696 0.196285677322252 0.197115172347505 0.193339481761559 0.205178037357578 3 0|3 /|+ 2126816 2127245 2127051.889 2126420 2127473 + gene protein_coding_gene FALSE TRUE AT3G06740.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 16 [Arabidopsis Thaliana] (GB:Q8LG10;GB:Q8VZR1;GB:Q9M7Y0); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G49300.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87039.1); similar to Os03g0831200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051792.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -0.196782161798533 -2.00847892965447 0.070063432850637 1 1.10578506079008 8.81221805389048 -0.196782161798533 0.0908350793669719
AT1G04660_at 4.12616007493888 4.29839926672606 4.60570549417116 3.88774100309424 3.92529640790532 4.37154145353048 4.18849107198498 3.7497466846704 4.61812463008767 4.52938410660024 4.674758206513 4.56948932200467 4.82367487827471 4.81368663211397 5.0040988236331 4.81193952069142 5.2369165791325 4.77737483276177 4.12478302998249 0.194790175829976 0.195198302752635 0.214032636807339 0.200498866824283 0.200326616132079 0.209912568069785 0.200548009941043 0.199888848653586 0.205101745393565 0.196225268157196 0.201289340795451 0.201716783776627 0.205327229580832 0.198640203619532 0.194790175829976 0.199275772674164 0.204768197489913 0.201135510329879 0.199958625496658 1 1 - 1300669 1301128 1300928.545 1300485 1301772 - gene protein_coding_gene FALSE TRUE AT1G04660.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G29020.1); similar to unnamed protein product [Triticum tur (GB:CAJ13547.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952) 0.260883454464532 2.00803676858328 0.0701164154946223 1 1.1051460664007 8.77567998460141 0.260883454464532 0.167494264667579
AT1G01130_at 2.65456668519176 2.83273252211817 2.39132079021397 2.35452121751607 2.33360147866086 2.70545935796287 2.89471051125589 2.84486537560463 3.34700028322235 2.96444517041855 3.03143167315202 3.01373160303648 2.89079098244799 3.45821598287199 2.93490384584373 2.95867452059707 3.1318409870959 3.18977469688622 2.94496535882229 0.195361422899555 0.195262488410328 0.205586039519025 0.203784014459135 0.197761074918109 0.19704795620959 0.189968101937092 0.199190731363936 0.206694505032816 0.196051729104289 0.194753214760720 0.194668008480301 0.189968101937092 0.194499821559774 0.196002949274111 0.193699643475374 0.210357921885741 0.201011153696802 0.192607627178433 1 1 - 61972 63750 63198.273 61963 63811 - gene protein_coding_gene FALSE TRUE AT1G01130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47170.1); contains domain CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED (PTHR22982); contains domain CBL-INTERACTING PROTEIN KINASE-RELATED (PTHR22982:SF45) -0.184896398391904 -2.00782974694698 0.0701412350714401 1 1.10484690627190 5.70729264597177 -0.184896398391904 0.0721577965651611
AT1G64950_at 7.51951731268321 7.68947539521225 8.20114899643353 7.95499877752641 7.36499405039669 6.84934241516727 7.6618909905947 7.48122685008384 6.87613397631231 7.73514196730937 6.73890158270597 6.68535933891124 7.09947304401795 6.75302904926126 6.10980076229544 7.22426979764959 7.66002793516371 6.68691343890078 7.2653115811821 0.183408919295504 0.179511128686691 0.179511128686691 0.183274569174607 0.191828689448254 0.189829582323808 0.196871189589811 0.179511128686691 0.183120816490269 0.193987708534461 0.191982399943187 0.185515840526373 0.186530177044759 0.183552981533391 0.185396828290582 0.179511128686691 0.185227089459925 0.193613034148318 0.179511128686691 1 1 + 24132659 24132669 24132664.125 24131224 24133121 + gene protein_coding_gene FALSE TRUE AT1G64950.1 CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5); oxygen binding member of CYP89A similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to CYP89A7 (cytochrome P450, family 87, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.208940275125272 -2.00702276922082 0.0702380611681494 1 1.10368088930878 14.6712832036195 -0.208940275125272 0.107796779501964
AT4G18130_at 8.16709119936827 8.12281698387005 8.12718047123697 8.13730249127542 8.46237159669476 8.04574898529583 8.73090023008266 8.54206911004213 8.1960504986676 8.51836186439132 8.27212062485997 8.23759354434 8.28283679503628 8.16440115474829 8.0275988914839 8.67851862934306 8.56939847731598 8.11993800618842 8.71026421899778 0.115060424578300 0.114524160156020 0.110957730821061 0.120336752446083 0.119864388047623 0.121210769340991 0.119588762110862 0.111020907713346 0.11684471409952 0.114609971793837 0.116369682089270 0.110925693260025 0.116591057415596 0.125251843049409 0.118095263585006 0.113589262476908 0.121351684503929 0.114934330523464 0.113524218041501 4 4 - 10042385 10042819 10042663.727 10042149 10046094 - gene protein_coding_gene FALSE TRUE AT4G18130.1 PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ signal transducer member of Histidine Kinase Identical to Phytochrome E (PHYE) [Arabidopsis Thaliana] (GB:P42498); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to Phytochrome E (GB:P55004); similar to phytochrome e [Medicago truncatula] (GB:ABD33241.1); similar to phytochrome E [Lycopersicon esculentum] (GB:AAF25812.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.189204961659724 -2.00644129621637 0.0703079073451588 1 1.10284082664766 16.6764066132000 -0.189204961659724 0.0795476127933616
AT1G17590_at 2.04941572798247 2.31614319737839 2.88708495960178 2.32559585162854 3.80169133841052 2.37014901716165 1.97145118753154 1.20196319931841 1.21640035580327 1.53863951357650 1.51588201319635 1.05420539748870 1.41570595056996 1.52351935584332 1.19792477268279 1.06718874215253 0.965085404096374 1.24638387343582 1.4692830955244 0.234780880212738 0.232437679220041 0.227885101363120 0.229936492427612 0.234790679299634 0.249050288096270 0.227969402278636 0.235860602811277 0.236477128427718 0.238364257854395 0.231316937806987 0.235696698984587 0.227885101363120 0.231821718060364 0.231452306811424 0.227885101363120 0.241534353271785 0.240776026108415 0.238652349424846 1 1|0 -|/ 6050555 6051324 6050889.8 6050215 6052561 - gene protein_coding_gene FALSE TRUE AT1G17590.1|AT1G17590.2|AT1G17590.3 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-8 (AtNF-YA-8) (NFYA8) [Arabidopsis Thaliana] (GB:Q9LNP6); similar to HAP2C (Heme activator protein (yeast) homolog 2C), transcription factor [Arabidopsis thaliana] (TAIR:AT1G72830.1); similar to CCAAT-binding transcription factor, subunit B [Medicago truncatula] (GB:ABE81531.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.400758123681544 2.00630146807946 0.0703247131038932 1 1.10263882966663 3.69360910670231 0.400758123681544 0.301126987084340
AT4G38740_at 11.9175397855116 12.0152001977667 12.3904869588227 12.4897803136002 12.2230185283154 12.2901665715372 12.7702951234606 12.8711623600491 12.1520992570873 12.4735223333450 12.6767785269579 12.4911519028497 12.6820631878863 12.4139461841582 12.1616015986992 12.7107844199020 12.9935009939797 12.6071566885710 12.0123488586256 0.0617530726466994 0.061240835852579 0.0651441557595032 0.0631895187493024 0.0630257364367737 0.0656828141364222 0.0633257054670148 0.0615170374468948 0.0687378212759886 0.0619834045200239 0.0620085397416909 0.0622979084087768 0.0624942096478424 0.067349819214892 0.0649237115334117 0.061240835852579 0.0636174761073318 0.0614771420916412 0.0624905004404707 4 4 - 18083620 18084107 18083885.545 18083389 18084245 - gene protein_coding_gene FALSE TRUE AT4G38740.1 ROC1 (rotamase CyP 1); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC1. Identical to Peptidyl-prolyl cis-trans isomerase CYP18-3 (EC 5.2.1.8) (PPIase CYP18-3) (Rotamase cyclophilin-1) (Cyclophilin of 18 kDa 3) (Cyclosporin A-binding protein) (CYP18-3) [Arabidopsis Thaliana] (GB:P34790); similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to cyclophilin [Cucumis sativus] (GB:AAX94775.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.167139923947371 2.00613569816332 0.0703446416395822 1 1.10239936439498 24.773346106997 0.167139923947371 0.0319471215867565
AT4G22750_at 9.76251199000768 9.90369429801272 9.96176502028367 9.91605763683652 10.2176352449825 10.0998841737597 9.57149332723641 9.53743143806245 9.40629838910067 9.52428854782626 9.8223699089413 9.30373401729407 9.41621820365367 9.37005891645205 9.6432794443088 9.34259382496283 9.46997706377655 9.36230958066293 9.52843354191083 0.107335264121251 0.104152096706992 0.103955130103446 0.103813371283189 0.111557924907714 0.105729280565832 0.107467339163915 0.107427521817202 0.116335907604453 0.109351916100262 0.104435755118273 0.105712094614841 0.119101989006854 0.104395396438913 0.105203488102576 0.103813371283189 0.111282235898795 0.106972696800840 0.111956301158937 4 4|0 -|/ 11949379 11950477 11949996.111 11949191 11951435 - gene protein_coding_gene FALSE TRUE AT4G22750.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT3G60800.1); similar to DHHC zinc finger domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99421.1); similar to Os03g0804300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051618.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.167515108014856 2.00592420847499 0.0703700741871287 1 1.10209386569610 19.3476380309573 0.167515108014856 0.0333089258843115
AT2G47230_at 1.76964825107401 1.10034669342018 1.90337370242433 1.51425558370151 1.7045434961329 1.86738551418743 1.72902525957345 1.18690827147913 1.08944050289457 1.38889640805287 1.32781228867376 1.48729945560465 1.56800662232028 1.61276954740370 1.67455679502775 1.93413162464285 1.79759669948119 1.56712667542823 1.73305961023004 0.180467711235352 0.186170334469061 0.18002651960947 0.184410896195504 0.183445113671932 0.182315431951901 0.182687504511726 0.184273557685925 0.190966667141380 0.182543729291259 0.186819992602632 0.187182606777571 0.179777316987355 0.187931119915893 0.182379548564870 0.187332833408110 0.191079528380737 0.179988342145330 0.185610100801639 2 2 + 19396502 19397050 19396712.909 19394090 19397302 + gene protein_coding_gene FALSE TRUE AT2G47230.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26540.1); similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G03300.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) 0.259135539202578 2.00572364191519 0.0703942011283033 1 1.10180415768942 3.10941649848177 0.259135539202578 0.165968881415398
AT1G55545_at 1.83504612952182 2.02140080888265 1.83437748435240 2.20874453140323 1.71803197012179 2.18258413409447 1.58683175996452 1.90276937337205 1.62808126210519 1.96831895957631 2.23121946612023 1.95804490902023 1.80608974464312 1.86218826141967 2.29129686265779 2.16007795868503 2.44835774314331 2.2817810172041 1.92548588169362 0.26439922839696 0.265503199443067 0.276325951051090 0.272749584197721 0.263763061135830 0.274380898829285 0.275661345943163 0.274560971526864 0.272399648209094 0.268102763176877 0.27637030645008 0.264831411211921 0.268709696094299 0.263504937100725 0.278913336289405 0.263016194729556 0.264565924250330 0.272616875909397 0.266884426905735 1 1 - 20742675 20743562 20743166.273 20742653 20746715 - gene protein_coding_gene FALSE TRUE AT1G55545.1 nucleoporin-related similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79599.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.219337903147181 2.00510496767056 0.0704686726491675 1 1.10091058926308 3.89647862220748 0.219337903147181 0.121200553407011
AT1G01380_at 2.97604133369534 2.66064752452413 2.76924585127337 2.63415840470478 2.60694338488067 2.5935176408643 2.82552181342014 2.55671226044340 3.19620211988656 3.28129108166341 3.12699934692451 3.16027779324095 2.99632155453052 3.02563835396557 2.77939617125483 2.86425441081806 2.74069431079807 3.31279819534013 3.33313402371036 0.183104895592349 0.177817183098287 0.176562233907728 0.182594896162061 0.17916642410771 0.175254176800169 0.175600431679718 0.194221617919666 0.179375466163198 0.17891391303341 0.177928588757661 0.183797937602358 0.174385704119057 0.179303277438778 0.182164774819038 0.178799832427900 0.177218805856380 0.179030325069122 0.176134899525034 1 1|0 +|/ 147272 147715 147502.5 147153 147942 + gene protein_coding_gene FALSE TRUE AT1G01380.1 ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor ETC1 is involved in trichome and root hair patterning in Arabidopsis. similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G01060.3); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.186587985283835 -2.0050943832637 0.0704699473643296 1 1.10089530288876 5.83835182282369 -0.186587985283835 0.0754646724013312
AT1G74910_at 9.29807133200362 9.3111435778157 9.00162298725026 9.00536284481997 9.76044843471612 9.37015462117822 9.60794256783195 9.3603113336753 9.668881861648 9.67632818198533 9.38847206504925 9.33729685033741 9.43230666206156 9.36098883000573 9.33526295524696 9.21389135170868 9.35014849246383 9.32384141153297 9.48920526044775 0.100508432646436 0.098719552910254 0.103976728780122 0.100143221761214 0.097303095050593 0.0997360348582019 0.10145783653352 0.100026695344122 0.103419301781624 0.0960237419209104 0.100747509913251 0.100413802508143 0.0959468329774725 0.0998689994312031 0.103821853914416 0.0968849583929669 0.101466025885030 0.100825977830066 0.0968523768838946 1 1|0 -|/ 28139476 28140589 28140073.3 28139022 28142487 - gene protein_coding_gene FALSE TRUE AT1G74910.1|AT1G74910.2|AT1G74910.3 ADP-glucose pyrophosphorylase family protein similar to ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana] (TAIR:AT2G04650.1); similar to putative GDP-mannose pyrophosphorylase [Linum usitatissimum] (GB:ABF48494.1); similar to Os03g0208900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049332.1); similar to Nucleotidyl transferase; Trimeric LpxA-like [Medicago truncatula] (GB:ABE79911.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835)|similar to ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana] (TAIR:AT2G04650.1); similar to putative GDP-mannose pyrophosphorylase [Linum usitatissimum] (GB:ABF48494.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.189332835783363 -2.00464648315786 0.0705239092301046 1 1.10024845993294 18.8165061350753 -0.189332835783363 0.0800245182212544
AT2G45120_at 1.32729591988654 1.12843263346959 1.46226416289190 1.67606958888558 0.961755455463096 1.10229567972453 1.32979063593668 0.90873055457345 1.31973134370034 1.09484558622609 1.59446045788807 1.58638647507811 1.30833633158791 1.29720318903468 1.16657884921836 1.26570261101267 1.54518178913286 1.53935552453736 1.02225598764240 0.176192272016122 0.178066270609159 0.183361530037376 0.183255011246761 0.177230958172459 0.175830766413625 0.176841902795201 0.183021619821559 0.186342176039609 0.177948920429453 0.182903111944130 0.172677317983150 0.183956332300633 0.175293497016797 0.172677317983150 0.183204647115202 0.178884577811892 0.17322441691079 0.193225273066798 2 2 + 18611105 18611642 18611334.727 18610693 18611826 + gene protein_coding_gene FALSE TRUE AT2G45120.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G60580.1); similar to ZPT3-3 [Petunia x hybrida] (GB:BAA21927.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.197161733344009 2.00456262176443 0.0705340169324505 1 1.10012735656034 2.51633514183352 0.197161733344009 0.091947659854619
AT2G46260_at 7.22716018060507 7.44088441406783 6.65682863066992 6.79428965851301 7.7567303597347 7.11339821415158 6.66733597922673 6.76256530749367 7.25462358358025 6.93485918849433 6.86301382004233 6.64641748192337 6.30200917063829 6.76818779840566 6.37858251533141 7.15096463293429 6.59444490118586 6.56229934134384 7.26644349937296 0.171729798742923 0.163271760305849 0.161410490476665 0.166584826760337 0.168052616910359 0.182319522811747 0.167236045815821 0.164325879578399 0.168086419000244 0.161410490476665 0.165217982005981 0.165319319760056 0.165601841783989 0.161479117882686 0.16555167517651 0.161410490476665 0.178889025178082 0.164005659301162 0.168111391698805 2 2 + 19005027 19005495 19005238.636 19003041 19005706 + gene protein_coding_gene FALSE TRUE AT2G46260.1 BTB/POZ domain-containing protein similar to ATPOB1 (Arabidopsis thaliana POZ/BTB containing-protein 1), protein binding [Arabidopsis thaliana] (TAIR:AT3G61600.1); similar to putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61652.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAT40121.1); similar to Os06g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057726.1); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.218955110335617 -2.00436031253 0.0705584065735151 1 1.09983521240258 13.9575067838286 -0.218955110335617 0.120831130563058
AT4G32915_at 5.17946960194911 4.87191041955477 4.12434915611671 3.71838497803515 5.0434598768412 4.66656111341324 5.3454060049272 5.05676339377516 3.97532915887811 4.18420333501539 4.73200675138865 4.59785227710079 3.71515365318501 4.53749243999445 5.23418871737516 4.10547019309204 3.57310834194648 3.76210046366624 3.82314233754230 0.245926456657707 0.242910557968436 0.23889000571473 0.239879568635877 0.243869479625962 0.246697029978477 0.23889000571473 0.243781138278639 0.267357011212299 0.241928118289031 0.23889000571473 0.23889000571473 0.243108294663798 0.23889000571473 0.243212506709353 0.240719856171918 0.250868095477716 0.23889000571473 0.23889000571473 4 4|0 +|/ 15885562 15886565 15885754 15885523 15886983 + gene protein_coding_gene FALSE TRUE AT4G32915.1 glutamyl-tRNA(Gln) amidotransferase similar to Os03g0651000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050789.1); similar to glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit, putative [Medicago truncatula] (GB:ABE77872.1); contains InterPro domain Glu-tRNAGln amidotransferase, C subunit; (InterPro:IPR003837) -0.218625956521658 -2.00389229330718 0.070614859448149 1 1.09915941656422 8.88898634234183 -0.218625956521658 0.120489649810260
AT3G14270_at 8.26157352918751 8.49328749883487 8.6387263516926 8.90962776958466 9.20328870758065 8.85189008416611 8.77031950243849 8.80407760716786 8.90537706046285 9.08489184671755 9.20868078163446 8.87496756017623 9.02117785532084 9.2007971260335 8.47315707487541 9.23519793643196 9.2367389180236 9.2717941469114 8.9996018981367 0.124122412875601 0.123415825689569 0.129289787708226 0.126462701304380 0.120172039191909 0.120361728895598 0.129416412340587 0.125569904517080 0.130646976028590 0.121648124021466 0.129715577017203 0.118776107953884 0.123539575949041 0.124362598224578 0.132081654801600 0.118776107953884 0.120164108185828 0.118776107953884 0.128960019457677 3 3|0 +|/ 4760612 4761157 4760952.3 4753932 4761463 + gene protein_coding_gene FALSE TRUE AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein Encodes a FYVE domain protein containing the following domains: FYVE + Chaperonin + PIP5K. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33240.2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34260.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71010.1); similar to putative phosphatidylinositol 3,5-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP12926.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.193629508501193 2.00385299101008 0.0706196020467401 1 1.09910266899189 17.7725676446807 0.193629508501193 0.0868209477735088
AT1G04540_at 2.64384677365108 2.39743450119913 2.73955290584033 2.29915305642603 1.73246262270225 2.53615528655082 2.25145216588231 2.69128164461397 3.21844566956206 2.64260028767201 2.40303959720984 2.40174021848211 2.35974518902780 2.29642616835343 2.62730120010997 2.19604533085656 2.60287584996034 2.43028826577845 2.51518763542206 0.217836265539908 0.213247799401888 0.216120270728427 0.218000006075071 0.216258068147700 0.21310679637579 0.219827844933237 0.217492261657686 0.222299535359438 0.218369067721346 0.223263330351162 0.215876317322759 0.21953034792733 0.217401431286665 0.219580484709962 0.218379020591966 0.220511278521837 0.214711815714365 0.215012262022633 1 1 + 1238494 1239026 1238781.273 1237255 1239060 + gene protein_coding_gene FALSE TRUE AT1G04540.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G33320.1); similar to C2 calcium/lipid-binding re (GB:ABE92950.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.27328397010158 -2.00324735770379 0.0706927213452952 1 1.09822826823845 5.01479766545375 -0.27328397010158 0.181009131561646
AT3G42400_at 0.865599340181575 1.08227200148544 0.919628660492231 1.23177869247012 1.03606602762972 1.38951178991494 1.05651658395399 0.895311177883244 0.645638409039961 1.15621027126851 0.756676417498119 1.38623908314834 0.912402607092071 1.0161128750945 1.02387729543603 0.946719222258266 1.25738022618202 1.18212357751521 0.696064046560634 0.167715742490646 0.169443359868669 0.168755865874107 0.168726597944443 0.168131275547369 0.167687317961132 0.167440875318448 0.169708443251946 0.167440875318448 0.167440875318448 0.169786583614430 0.169877578753244 0.175059769945155 0.175024527667628 0.17435812117174 0.168638078381040 0.173968896784569 0.171009115155197 0.170418790816084 3 3|0 +|/ 14533030 14533707 14533491.857 14531604 14533752 + gene protein_coding_gene FALSE TRUE AT3G42400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G33200.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.198437677077863 2.00278254679966 0.0707488868953296 1 1.09755725727677 2.00600002857696 0.198437677077863 0.0940398492399415
AT2G17975_at 3.52053593441033 3.75059367995015 3.69918889789957 3.27938394855632 4.00510536296492 3.82120983933429 3.5838180437734 3.24777761731607 4.11362844825701 3.92743143425395 3.59531866315489 3.56254302002039 3.52247802633942 3.32866737716086 3.29297026240017 3.62852001840397 3.68694322815403 3.59059647689558 4.30685014870235 0.209487448656520 0.206419600818026 0.208986588541304 0.209006797122066 0.204994075617813 0.206238975872176 0.205137445756004 0.20249246254641 0.207520962166690 0.206078696476929 0.206893011770887 0.205520578140281 0.204676051468877 0.205408192826623 0.20249246254641 0.20249246254641 0.212180807024285 0.20249246254641 0.209265868200671 2 2|0 -|/ 7829525 7830372 7830043.3 7829156 7831087 - gene protein_coding_gene FALSE TRUE AT2G17975.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G25490.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE81090.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -0.207212341505993 -2.00277969196521 0.070749231988923 1 1.09755313617360 7.43443898776093 -0.207212341505993 0.106101491511998
AT4G39240_at 7.55858140747836 7.693408393785 7.64349999069496 7.72867186751621 8.1377510547276 7.60876897052062 7.79578460687873 7.55995577234046 7.1386221128135 7.60722680622179 7.5502405886992 7.65505330648284 7.35963003623107 7.90992713317556 7.52811021532718 7.69180615906947 7.36546908183674 7.63580350663203 7.164767394863 0.170223516525173 0.18238602692387 0.175431183931284 0.175737620633614 0.171256809899806 0.173736753307337 0.168625139482382 0.185844784842543 0.208983248545966 0.169805910279186 0.169752307838121 0.168447177964293 0.179389833581281 0.174636046745836 0.169633042520768 0.168587217209217 0.173340294224998 0.178494359786483 0.174401912336945 4 4 - 18269609 18270163 18269848.727 18269144 18270781 - gene protein_coding_gene FALSE TRUE AT4G39240.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14905.2); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.205603328938269 2.00277127923544 0.0707502489324028 1 1.09754099197119 15.1610746453583 0.205603328938269 0.103958165522598
AT1G77780_at 0.945783956973652 0.531269154556742 0.481770408521745 0.92743185892993 0.480874515796997 0.649514682767103 0.929562969710533 0.464161266551687 1.30567072669854 1.21853894979815 0.956868914842779 0.701158572277972 0.277532891799283 0.513536999957913 0.847242547049695 0.871813978250525 1.30268788257005 1.09247680097695 1.07657228878462 0.210404193482611 0.213024099126008 0.219604403844705 0.216070504830599 0.207591132561956 0.208226855705525 0.211313320867532 0.215252144125113 0.215898548485001 0.212330588913681 0.211495171967115 0.207591132561956 0.212103487841165 0.213677845450832 0.211762582396370 0.207953398095548 0.207900788845556 0.215449127232902 0.213576218465921 1 1 - 29253433 29253867 29253680.273 29253194 29254422 - gene protein_coding_gene FALSE TRUE AT1G77780.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G77790.1); similar to beta-1,3-glucanase precursor [Oryza sativa] (GB:AAD10385.1); similar to Os01g0801500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044540.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.231321151036166 -2.00265413666742 0.0707644107234127 1 1.09737189289831 1.68663384100576 -0.231321151036166 0.135765205580139
AT2G05430_at 1.14157059949339 1.11047495092171 1.71625736244061 1.28936493619205 1.17713727257799 0.97237957726978 1.27747362171939 1.45288264538860 1.48744364423559 1.92702095584853 1.25913430408755 1.56505382263623 1.49361097087595 1.38111122284539 0.911640583335223 1.52399496809635 1.33209372353411 1.67081483416655 2.05548894646744 0.195509609099464 0.187614962980998 0.190266013412848 0.195239143188039 0.189064135337197 0.202622835113667 0.187614962980998 0.190637058733453 0.195473769972604 0.187614962980998 0.189623333391482 0.195495733303189 0.188764246614776 0.193375440483816 0.191346582440865 0.187614962980998 0.191889737606377 0.19687130363924 0.190679528080486 2 2 + 1986479 1987070 1986768.818 1985993 1987263 + gene protein_coding_gene FALSE TRUE AT2G05430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58230.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain Globin-like; (InterPro:IPR009050) -0.193975856207007 -2.00248683584762 0.0707846409244584 1 1.09713039579310 2.87494244702428 -0.193975856207007 0.0875420792672048
AT3G28870_at 1.02311768207727 1.04771700195761 0.653447079627732 1.26259846260685 0.678199004264101 0.736777758617213 0.941397772842341 0.776432623577444 1.14094805359086 1.15786669961814 0.809667658502497 0.85754999845052 0.871308246287846 0.868690657429735 0.698383587030702 0.862381230604782 1.02614578649778 1.47211328766249 1.41720168596730 0.178270960234176 0.180277053929816 0.178562707879528 0.180698743136353 0.178022692785814 0.187376863084954 0.183105892580752 0.18909605634022 0.189849697241376 0.183795941405943 0.188151571100745 0.181636298687160 0.180065101560326 0.185283463482031 0.180004567513064 0.184203763522567 0.182201722908503 0.180723783044434 0.184198370236101 3 3|0 +|/ 10892270 10893048 10892657.1 10891592 10893076 + gene protein_coding_gene FALSE TRUE AT3G28870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24260.1); similar to GM09620p [Drosophila melanogaster] (GB:AAL39415.1); similar to GA19239-PA [Drosophila pseudoobscura] (GB:EAL30943.1); similar to CG5931-PA [Drosophila melanogaster] (GB:NP_648818.3); contains InterPro domain Sec63; (InterPro:IPR004179) -0.209901391834249 -2.0017647735359 0.07087201555918 1 1.09608820066095 1.97593702467152 -0.209901391834249 0.109765710552887
AT4G02500_at 8.75738684645862 9.09650889191146 7.27161463082559 7.90064362122721 8.54529150287451 8.37141019618207 9.14805422112588 9.32792397114999 8.65100436009109 8.60484818619631 9.22833133147713 9.7065379586508 9.1220560501047 9.21274926513134 9.18743822656979 9.07219733392916 8.7039489772856 9.24750345413039 8.48124769525105 0.153306630033533 0.146417042243854 0.15920264531051 0.151246321226650 0.156355011359144 0.148000662368386 0.145540244928444 0.146901589729073 0.153619150292531 0.154789964966336 0.155757850968472 0.146627304125459 0.146462408098372 0.152761978509048 0.149247383873769 0.145468574856863 0.151196116661019 0.146818077545994 0.160764207155055 4 4 + 1102483 1103297 1102811.182 1101507 1103610 + gene protein_coding_gene FALSE TRUE AT4G02500.1 ATXT2; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. Identical to Putative glycosyltransferase 2 (EC 2.4.-.-) (AtGT2) (GT2) [Arabidopsis Thaliana] (GB:O22775;GB:Q9SYY3); similar to ATXT1, transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G62720.2); similar to alpha-1,6-xylosyltransferase [Gossypium raimondii] (GB:CAI11451.1); similar to alpha-1,6-xylosyltransferase [Vitis vinifera] (GB:CAI11449.1); similar to Glycosyltransferase 5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95475.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.227083292035215 -2.00111953972901 0.0709501787175215 1 1.09515702695418 17.4344186044724 -0.227083292035215 0.131027532542157
AT2G18420_at 0.628062462127506 0.396677837968615 0.763243461298816 1.09410049559783 0.755151766018442 1.04838831514033 0.963222431227889 0.291902158709778 0.093311155629757 0.656932685580867 1.26545566799693 0.306860213930946 0.184118208373801 0.681929448160863 0.793953579025553 1.20675413918115 0.85421297316234 0.965642460880753 1.19867332731529 0.230335461418593 0.236663899408117 0.224144627064872 0.234592634848957 0.241340911367681 0.225421151169815 0.231486651410248 0.224144627064872 0.224144627064872 0.250805625379772 0.245305841932481 0.230283804017309 0.246980295109521 0.224144627064872 0.228871427414616 0.224144627064872 0.238009855911743 0.248489242393670 0.225971519923821 2 2 + 8000949 8001365 8001270.375 8000883 8001630 + gene protein_coding_gene FALSE TRUE AT2G18420.1 Encodes a Gibberellin-regulated GASA/GAST/Snakin family protein similar to GASA1 (GAST1 PROTEIN HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT1G75750.1); similar to GAST1 protein homolog (GB:AAB06310.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.238990783584572 2.00072654284295 0.0709978255660502 1 1.09458993105067 1.45859606226832 0.238990783584572 0.144753146014904
AT2G43950_at 7.14877054108145 7.84234361854483 7.23900221438727 7.02065170962660 7.7440305876959 7.72405164581919 7.82904202674987 7.9937444878601 6.74539923590651 7.07069491916242 6.7930810303383 6.71368126996179 6.82950488601139 6.21973016634635 6.83432100845352 6.86070437216008 6.64023822046272 6.35641370045349 6.6893253189597 0.203590709502974 0.197381848557549 0.203403903483701 0.202150059759863 0.198086335543111 0.200313357086268 0.202849739041876 0.210568304152784 0.217900752914153 0.204055098016535 0.198464398926232 0.201438168587976 0.200795424332301 0.202858079982873 0.206864970623409 0.197663083548998 0.204766601181993 0.210944907085263 0.209078112021521 2 2|0 -|/ 18207693 18208827 18208330 18207400 18209805 - gene protein_coding_gene FALSE TRUE AT2G43950.1|AT2G43950.2|AT2G43950.3 OEP37; ion channel|OEP37 Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos. similar to outer envelope protein [Pisum sativum] (GB:CAB50915.1) -0.225360811039784 -2.00055086305849 0.0710191346154427 1 1.09433643927417 14.3132541821955 -0.225360811039784 0.129067529951861
AT3G24720_at 2.19056750374214 2.45619385170755 2.06883955579924 2.35393325296490 1.64928214015882 2.13380587661659 1.92736216496169 2.21758732804796 2.73054739578753 2.32793549590788 2.22774331109624 2.30899305620407 1.86627412943487 2.08384136696906 2.23780570601561 2.26357413176995 2.43655690552078 2.25692231502870 2.43386387568640 0.243885767110814 0.234307896980145 0.237764256010097 0.236753147724678 0.239920425274001 0.234441650372367 0.240948555692351 0.234307896980145 0.235811731109748 0.237383143862717 0.239490656279455 0.239980095505732 0.236936755973767 0.238253310502266 0.241294986535523 0.2382454066131 0.238120990429339 0.250691652647111 0.238759697496858 3 3|0 +|/ 9029048 9029885 9029570.2 9028475 9029955 + gene protein_coding_gene FALSE TRUE AT3G24720.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G04700.1); similar to Octicosapeptide/Phox/Bem1p; Protein kinase [Medicago truncatula] (GB:ABE86676.1); similar to Os12g0594300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067178.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.216848781467820 -2.00053882040778 0.0710205955456705 1 1.09431906303380 4.47852785310762 -0.216848781467820 0.118744969167881
AT1G47740_at 6.64790366692837 6.87704901088538 6.35398926919803 6.3836460111426 7.16182348129838 6.80920042869195 7.36047075115655 7.42819826548378 7.3860567422687 7.02274811074969 7.54071977619927 7.62595559855321 7.07932675010292 7.46707362027423 7.6305404492705 6.98174773472903 6.44720178636297 7.58555496556107 7.38299973727358 0.192053849082176 0.178431425428328 0.183834299029967 0.18701770924849 0.183934200633952 0.186402479591418 0.180148389362010 0.179030027712308 0.178843715466696 0.172400069320714 0.173208860975134 0.175614296408816 0.178265985913413 0.174192780553071 0.174925169840849 0.17288685194071 0.182655688414929 0.174550232690098 0.175496611547703 1 1 + 17570699 17571420 17571133.636 17568951 17571737 + gene protein_coding_gene FALSE TRUE AT1G47740.1|AT1G47740.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25170.1); similar to UPF0326 protein hag1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94476.1); similar to Os03g0198500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049279.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) -0.185205202164893 -2.00023266611275 0.0710577454833243 1 1.09387732996841 14.1571350848793 -0.185205202164893 0.0738919389932721
AT3G50850_at 1.84821424239427 1.68369449457743 1.86469119353708 2.05700710119928 1.75277180417357 2.16734093982220 1.94270306475419 1.84306565752977 1.61600426880440 1.61196159718749 1.79629854758999 2.01354271809154 2.09368104475847 1.80644616502396 2.11825915511056 1.39075793351374 2.37246283763607 1.94072612266305 1.83449147684188 0.19663520271412 0.193042553275890 0.206644094337995 0.208847089575729 0.200929737934078 0.197394562759712 0.204121953365929 0.198931580824562 0.194604826275213 0.193042553275890 0.203092389163346 0.193042553275890 0.194253913530058 0.205593792387023 0.193042553275890 0.200720156434797 0.195816089832528 0.195614603508070 0.206903426463258 3 3 - 18912514 18912944 18912754 18912323 18913133 - gene protein_coding_gene FALSE TRUE AT3G50850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49560.1); similar to hypothetical protein LOC207965 [Mus musculus] (GB:NP_001028408.2); similar to Os07g0569500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060038.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain UNCHARACTERIZED (PTHR14614:SF3); contains domain UNCHARACTERIZED (PTHR14614) 0.192534714736478 1.99943325221404 0.0711548351042112 1 1.09272403081229 3.70943986049498 0.192534714736478 0.0858056848849647
AT2G18500_at 2.76949931680472 2.97323620930157 3.07757602309908 3.61748724464492 3.06044217013643 3.10526594715779 2.93442847870446 2.80570223300814 3.35205316756422 3.82026224181022 3.72803610658545 3.82475260325967 3.41974885191365 3.58137282032744 3.71584873232642 3.34333455179025 3.71456596002340 3.90479137724793 3.59788415924017 0.209801480600899 0.209703607161008 0.216043728047209 0.228751806712253 0.210552308616613 0.22428501881947 0.206539580035685 0.209545248067394 0.219238723048122 0.208515892756193 0.212323993541001 0.212052979894837 0.207419322423126 0.210967346566533 0.205748729539640 0.211632285247845 0.223823298229893 0.209645091392894 0.212672640401862 2 2 + 8034610 8035098 8034856.182 8034116 8035333 + gene protein_coding_gene FALSE TRUE AT2G18500.1 ATOFP7/OFP7 (Arabidopsis thaliana ovate family protein 7) similar to ATOFP8/OFP8 (Arabidopsis thaliana ovate family protein 8) [Arabidopsis thaliana] (TAIR:AT5G19650.1); similar to ovate protein [Lycopersicon esculentum] (GB:AAN17752.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) 0.204233069683787 1.99913431443379 0.071191173244707 1 1.09229280763369 6.66501615201004 0.204233069683787 0.102613166150316
AT4G25910_at 8.38187949791025 8.50600266438413 8.22744451324052 8.18563797055863 8.80472001713158 8.71140498111478 8.80688022638741 8.77916218356721 8.87977312050206 9.04521971913236 8.80307620634804 8.88452662138565 8.88169640466271 8.89758869855477 8.4442240276327 9.0006313170008 8.82615252790886 8.780122949855 9.10411328251597 0.116847443136662 0.116033621255365 0.12042272916716 0.115207678445888 0.121667985054034 0.112149688618815 0.126953044176974 0.115250259761465 0.114544859028324 0.114099253603704 0.119127706293302 0.119632918447682 0.112149688618815 0.112149688618815 0.120995598844775 0.114570107112603 0.117291910986228 0.120926375816654 0.114959215919971 4 4 + 13164336 13165077 13164735.091 13163938 13165214 + gene protein_coding_gene FALSE TRUE AT4G25910.1 NFU3 (NFU domain protein 3) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast. Identical to NifU-like protein 3, chloroplast precursor (AtCNfu3) (AtCnfU-IVa) (NIFU3) [Arabidopsis Thaliana] (GB:Q84RQ7;GB:Q0WN92;GB:Q8LCL7;GB:Q9SZG6); similar to NFU2 (NFU domain protein 2) [Arabidopsis thaliana] (TAIR:AT5G49940.1); similar to Os06g0694500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058443.1); similar to Os11g0181500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065900.1); similar to Similar to seven transmembrane protein Mlo4 [Oryza sativa (japonica cultivar-group)] (GB:AAX96187.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) -0.165564484549551 -1.99907081931678 0.0711988937880604 1 1.09220121818518 17.4626186992295 -0.165564484549551 0.0282404497628279
AT4G10560_at 0.640975878059006 0.69846155431295 0.246545160084984 0.624845388646052 0.736864210564343 0.41311157312709 0.709391160744713 0.782650259644827 0.99866933801411 0.585735354186671 0.149748846341876 0.772539063340782 1.00046350683059 0.335274782128094 0.738300016339346 0.879126093284914 0.757033308463338 1.07298426360282 1.10970555161719 0.184251659686244 0.183764557291086 0.184394866494053 0.18124590566243 0.185416683146963 0.181511965373755 0.182845799044662 0.187017548950557 0.196818042898942 0.183927810098252 0.180480412730032 0.18299227461967 0.181952779919375 0.177442362827858 0.181093275554405 0.183468069280450 0.184363927131905 0.182200469306833 0.177244452590839 4 4 - 6520776 6521324 6521029.182 6520767 6522878 - gene protein_coding_gene FALSE TRUE AT4G10560.1 MEE53 (maternal effect embryo arrest 53); zinc ion binding similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62030.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02540.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.193690571491305 -1.99872089444869 0.0712414561447715 1 1.09169648545690 1.41221588963839 -0.193690571491305 0.0876617673518223
AT3G01520_at 9.94988978887248 9.99167203673987 10.1153754663770 10.1416837679957 10.5411026615445 10.4580032900747 9.74483331923554 9.84828636806261 10.0944489419840 9.88565546676701 10.1232138736738 9.71847351637401 9.92531648377487 9.80800714853628 9.7004826189371 9.62341211785234 9.82411765199163 9.96317946300857 9.83043890887197 0.093644491522469 0.0933296148854917 0.0923010710182518 0.0916245451922823 0.0994096564736057 0.0922232137654038 0.096685436913059 0.0902229194461721 0.101161932806533 0.0907773677366931 0.0905671551029241 0.0900371140857967 0.0916733722079116 0.0945272082885802 0.0912574440331981 0.092298445842666 0.0926480787142062 0.0937777085563016 0.0911361125405844 3 3 + 208538 209901 209191.364 208446 210144 + gene protein_coding_gene FALSE TRUE AT3G01520.1 universal stress protein (USP) family protein Identical to Universal stress protein A-like protein [Arabidopsis Thaliana] (GB:Q8LGG8;GB:Q940U0;GB:Q9SSA2); similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G14680.1); similar to Os02g0707900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047879.1); similar to putative ethylene response protein [Capsicum chinense] (GB:CAJ13711.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.164649252498955 1.99860872825696 0.0712551042703937 1 1.09153470427724 19.9851674032676 0.164649252498955 0.0245017059856633
AT4G23490_at 1.9500666745609 2.17248523688068 1.64309912847291 2.0621040805775 1.93246227330464 1.96609163765902 2.89280632479958 3.06647167944555 2.97111270107748 2.62700762378555 3.28197664090589 3.0783510422428 2.42613536652566 2.58415274580279 3.47978278588084 2.70696827907200 2.69723805274649 2.97375459479541 2.4157985666339 0.245378396253337 0.236197531796195 0.236436495572092 0.237156871122124 0.237037295050974 0.239347029741492 0.234767323553948 0.241671465073819 0.232992255259585 0.237227130362674 0.233636428131901 0.236061848294468 0.239133459646398 0.243517722046659 0.237068789913938 0.234141674624295 0.246783891558553 0.240915885655064 0.2399490636917 4 4 - 12251784 12252209 12252041.818 12251442 12254280 - gene protein_coding_gene FALSE TRUE AT4G23490.1 fringe-related protein similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G11350.1); similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT5G41460.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) -0.193639778793658 -1.99851608683660 0.0712663785093053 1 1.09140108716578 4.99812399729366 -0.193639778793658 0.0876151949681398
AT2G33380_at 9.66477509644643 9.93679987915287 10.3169847065209 10.3910325088466 9.88305704408795 9.62942126015962 11.1566167299384 11.1906880403920 7.86658747414281 9.49122759815797 9.34183111817307 8.97935746732326 9.82332895517568 9.35626853908096 7.85926824969836 10.0332332203781 10.2867751487030 9.6074740153532 8.49590722350498 0.151964965521114 0.142652159814128 0.146809596684904 0.149548823698513 0.144390111103641 0.145413417207685 0.154181340472884 0.151171506230308 0.179843453133829 0.145232083104935 0.153148285000956 0.147603755304646 0.148258016276583 0.146286530175619 0.179648108612945 0.142652159814128 0.148737928908376 0.151223803948131 0.154606485413920 2 2|0 -|/ 14152063 14152962 14152566.6 14151907 14153547 - gene protein_coding_gene FALSE TRUE AT2G33380.1|AT2G33380.2 RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. similar to ATS1 (ARABIDOPSIS THALIANA SEED GENE 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G26740.1); similar to Ca+2-binding EF hand protein [Glycine max] (GB:AAB71227.1); contains InterPro domain Caleosin related; (InterPro:IPR007736)|similar to Ca+2-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G29560.1); similar to caleosin [Sesamum indicum] (GB:AAF13743.1); contains InterPro domain Caleosin related; (InterPro:IPR007736) 0.180469300360898 1.9975698270706 0.0713816315858815 1 1.09003643863276 19.2855966687786 0.180469300360898 0.0658910091234225
AT3G24340_at 1.13200246484861 0.838255187391173 1.08769879973048 1.3158019205531 1.30457551048012 0.822114004299926 1.24562687789671 0.87306019728441 0.966345097317636 0.818479239554872 1.05499645297932 1.23643234500505 1.43256521697009 1.03929272602093 1.34146250899568 0.939131869087574 1.16280374407921 1.35677163499167 0.810066938380313 0.189393116375571 0.19410579159721 0.189093440250171 0.194715378820855 0.190828978131638 0.184548621622846 0.186650408149856 0.193238289295916 0.191870564918776 0.194794016235445 0.186101805400295 0.195697691067043 0.188137551211187 0.198101340224772 0.184873091781486 0.196707605840277 0.211820989788374 0.191609574457624 0.189414379183543 3 3 - 8832093 8832666 8832374.818 8832092 8835729 - gene protein_coding_gene FALSE TRUE AT3G24340.1 CHR40 (chromatin remodeling 40); ATP binding / DNA binding / helicase similar to CHR31 (chromatin remodeling 31), ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G05490.1); similar to SNF2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26561.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.220389840379632 1.99698816769989 0.0714525632854898 1 1.08919773057862 2.10758978065247 0.220389840379632 0.123572849125002
AT2G26760_at 1.02322275809509 1.17715456902729 1.25799704527531 1.26472210659342 0.864521540792726 1.32196550336097 1.54326782705602 1.21639008465928 1.21694070433145 1.27751194982262 1.47293001880899 2.12510570337766 1.43502157306822 1.43816736503738 2.44210858967546 1.80120759959179 1.69184260218399 1.76102324528746 1.4137715660436 0.212307159552180 0.212481176228631 0.212526271454973 0.211321539691553 0.21540312842811 0.220322615549910 0.218323229254617 0.215326992600756 0.216111492221592 0.213956682178685 0.220882956428264 0.216060680706113 0.212035701629667 0.211321539691553 0.222801216364810 0.211321539691553 0.214906535831879 0.220850135120472 0.211626195379102 2 2 + 11409593 11410227 11409903.909 11408407 11410505 + gene protein_coding_gene FALSE TRUE AT2G26760.1 CYCB1;4 (CYCLIN 3); cyclin-dependent protein kinase regulator A2 type cyclin similar to CYC1 (CYCLIN 1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT4G37490.1); similar to B-type cyclin [Nicotiana tabacum] (GB:BAA09368.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.202738584846249 1.99691744296394 0.0714611924553197 1 1.08909575781036 2.74548880128823 0.202738584846249 0.100884229514500
AT1G34260_at 7.67148036817932 8.14372757808313 7.37203261586882 7.6985619160313 7.7331007496753 7.81188034549271 7.41572912436144 7.50277759537544 7.6828671623869 7.05905690355502 6.92509858999816 6.90096370979896 6.67706579763466 7.332564844447 6.05100352467743 6.79510358345293 6.69847539132207 6.43240622192221 6.56744553050025 0.166590308390202 0.167189148741235 0.165871739880723 0.16055767625431 0.159778555935276 0.164106026845291 0.166351219991840 0.175866898803631 0.162925770427767 0.160085667152457 0.156946646719349 0.157948529024763 0.158663961713222 0.163224760572225 0.193051412709183 0.161042170254653 0.168728276643829 0.172377494336745 0.171733816299147 1 1 + 12490987 12491744 12491382.364 12485945 12492126 + gene protein_coding_gene FALSE TRUE AT1G34260.1 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33240.2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71010.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96911.2); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498) -0.203036375320095 -1.99604002093380 0.0715683282901599 1 1.08783079160423 14.5835154899938 -0.203036375320095 0.101413941730888
AT3G57940_at 3.35781576647754 3.27054778927054 2.99392356082203 3.43597393756019 2.61618003865718 3.20927066133307 3.41988987203715 3.50438632921147 3.13692078087341 2.68279347672169 2.61232821911418 2.47478726486681 2.70236949054811 2.45591662857409 3.06985695541798 3.14339940219053 2.54013157656673 3.05643732175698 2.83033237608127 0.230346169866102 0.222105614132340 0.21526907201538 0.227343538284609 0.214814544128210 0.215203234754164 0.216245831752735 0.217902092408095 0.217777406408532 0.218717552598936 0.214814544128210 0.225158686536815 0.227823903262505 0.221559384177021 0.215035952196668 0.221167163571045 0.224777572346036 0.214899839110558 0.230494765939163 3 3|0 +|/ 21465576 21466761 21466165.889 21460275 21466938 + gene protein_coding_gene FALSE TRUE AT3G57940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10490.1); similar to N-acetyltransferase 10 [Danio rerio] (GB:NP_956938.1); similar to DEAD/DEAH box helicase, N-terminal [Medicago truncatula] (GB:ABE87709.1); similar to PREDICTED: similar to N-acetyltransferase-like protein isoform 9 [Bos taurus] (GB:XP_881645.1); contains InterPro domain Protein of unknown function DUF699, ATPase putative; (InterPro:IPR007807); contains InterPro domain Domain of unknown function DUF1726; (InterPro:IPR013562) -0.225384205084378 -1.99585249619989 0.0715912450751518 1 1.08756046972504 6.04612461205692 -0.225384205084378 0.129724109231562
AT3G55070_at 8.16229724767729 8.20642087455907 8.10200208106578 8.05386300553695 8.50600589364365 8.32800264903827 8.33306132751173 8.31356129192131 8.21575731855154 8.11641809220644 7.66865333217173 7.61767907991717 7.77116049230495 7.94318316765866 7.47678715645355 7.9699006906507 7.82780768526629 7.84066667726693 7.9416386826047 0.135008213714969 0.129556464686573 0.13579225630223 0.143569264576490 0.132257179416693 0.131802644994778 0.131777479129037 0.129556464686573 0.141549885410465 0.133202171208975 0.136448513703497 0.131492735273325 0.130265085767268 0.129556464686573 0.144765691108714 0.133521294009543 0.135730504442090 0.140211662395518 0.133812286184621 3 3|0 +|/ 20420804 20421812 20421380.5 20419263 20422117 + gene protein_coding_gene FALSE TRUE AT3G55070.1|AT3G55070.2 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE91354.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE91354.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) -0.166579178669583 -1.99584740381854 0.0715918674940556 1 1.08755312906828 16.178527371202 -0.166579178669583 0.0329848143121888
AT4G31930_at 3.67371393442132 4.3210373637998 3.4605747735755 3.69991098109327 3.75174142313924 3.89871783050793 4.09230769769739 4.40383705878643 3.24888207428534 3.54152227171703 3.46941439953493 3.68098508177236 3.40179326130444 3.22946640071598 3.59103710632644 3.48478079136049 3.35488494720435 3.39897061372210 3.67515536093581 0.245007867401213 0.24379649021426 0.245206977909041 0.245417537004262 0.239410304225212 0.250241007512087 0.239410304225212 0.245296496333868 0.253505096364772 0.246455740974757 0.248688655877954 0.239973054173316 0.239410304225212 0.241765688036211 0.242265574749313 0.239410304225212 0.243078566049878 0.243816783889603 0.243303868401663 4 4|0 -|/ 15449793 15450641 15450205.8 15449636 15450844 - gene protein_coding_gene FALSE TRUE AT4G31930.1 mitochondrial glycoprotein family protein / MAM33 family protein similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT1G80720.1); similar to Os09g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063903.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16469.1); similar to Os08g0439900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061899.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) -0.228545544333669 -1.99558536187652 0.0716239025291421 1 1.087175406598 7.38269837165529 -0.228545544333669 0.133483609035327
AT3G11200_at 8.28421443060541 8.37088158682886 8.43239277584897 8.40022066594081 8.14530086282829 8.42517309216278 8.03177789744364 8.38061960503534 8.01126808331619 7.82054897788601 8.33086094213585 8.41627638721625 8.20637949537227 8.42026707010386 8.38176057753595 8.44823143920827 8.34248797264118 7.92127894554385 8.21818074949244 0.132987865422209 0.129409668671744 0.129395002112257 0.132646350462410 0.135922218938264 0.130282306652183 0.136642799553835 0.127410925177154 0.140949857600348 0.141668447035989 0.139207349706347 0.127410925177154 0.137177707318372 0.131034907429840 0.139864427848601 0.132705199922209 0.138802888792651 0.132054062694412 0.131325231888187 3 3 - 3508416 3510064 3509121.818 3508048 3510633 - gene protein_coding_gene FALSE TRUE AT3G11200.1|AT3G11200.2 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G05610.2); similar to PHD4 [Medicago truncatula] (GB:ABJ99761.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.187837693019185 1.99531558073183 0.0716568976865329 1 1.08678654976566 16.4713770098957 0.187837693019185 0.0790322370739978
AT1G65445_at 1.96149764249687 1.82977839829313 1.54067249897999 1.68433993150943 1.667610924511 1.92437692342837 2.50258243153200 2.45791904226081 2.46893481484683 2.06386320210511 3.05470282283173 3.35677778536052 2.56790388931806 2.87819822888363 3.32461567802751 3.74330409833173 2.10579248663780 2.92122076590692 1.94631920677943 0.242485317870119 0.22246521343352 0.232874488835107 0.223328700216051 0.22246521343352 0.235369416076005 0.224757272329194 0.226766388573736 0.238711188957313 0.224793398214766 0.228494524470187 0.226882726132560 0.237842817631329 0.22246521343352 0.233535798790007 0.228793167182540 0.230405102035404 0.22246521343352 0.224448953378837 1 1 + 24319600 24319973 24319801.091 24319477 24320415 + gene protein_coding_gene FALSE TRUE AT1G65445.1 transferase-related similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G48930.1); similar to hydroxycinnamoyl transferase [Coffea arabica] (GB:CAJ40778.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.17533220956497 1.99394227022793 0.071825078518912 1 1.08480742551636 4.52298232945446 0.17533220956497 0.0563196259029785
AT4G18810_at 8.45916084883025 8.59406461531172 8.12802392167419 8.2635115245863 8.8601838135762 8.23791316181891 9.38143006792184 9.34125424050723 8.02731704494318 8.81396048718865 8.36734555864907 8.196200711529 8.53820222941536 8.90061300727984 8.31202490625541 8.57349952804474 8.71313779441194 8.74072078277374 8.34104130554612 0.153660690188422 0.151219231126977 0.165371820389081 0.162505502716918 0.149908826733500 0.156765765393764 0.156468519287183 0.155874074524369 0.163013303728901 0.155281173669615 0.160563536820461 0.161075798783083 0.153149740456295 0.155493888065914 0.154147563286854 0.151551070509770 0.156243451854989 0.157576523774507 0.158796301318545 4 4|0 -|/ 10322721 10323451 10323103.444 10322449 10325781 - gene protein_coding_gene FALSE TRUE AT4G18810.1 transcriptional repressor similar to oxidoreductase/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT1G16720.1); similar to Os02g0234500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046381.1); similar to UOS1 [Pisum sativum] (GB:AAM19355.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.211478776079978 -1.99390532154034 0.0718296084859842 1 1.08475418528737 17.1266049462888 -0.211478776079978 0.112869692864547
AT1G13130_at 1.32611319659703 1.15754428054313 1.15019377919757 1.36967703153709 0.974242487544563 1.13145440270381 1.93276575365982 1.56519736339412 1.58190784950979 1.70564964973180 1.23063721601039 1.41862482361863 1.51002651243841 1.81771650591552 1.72597877032528 1.14365930689805 1.57205376289024 1.80098823024748 1.42319727011977 0.225898266919873 0.224661868809896 0.226587556827910 0.229726532239959 0.222088768564087 0.226912149312558 0.226633549116002 0.222773813723648 0.231686867127362 0.232486868899647 0.221213848561925 0.226677122419884 0.231316039891752 0.224834038127512 0.224618557288882 0.223379532218207 0.226864567208022 0.221213848561925 0.232789276561133 1 0|1 /|+ 4477360 4477657 4477506.7 4474718 4477939 + gene protein_coding_gene FALSE TRUE AT1G13130.1 glycosyl hydrolase family 5 protein / cellulase family protein similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT3G26140.1); similar to H0510A06.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67676.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547); contains InterPro domain Ricin B lectin; (InterPro:IPR000772); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) -0.190902086023443 -1.99367885290254 0.0718573797281613 1 1.08442787023334 2.8747546523122 -0.190902086023443 0.0841427448632404
AT4G24110_at 2.14414463613279 1.79236331377090 2.26597207342148 1.61543461367066 1.56820170468319 2.11514877662845 1.81066257422231 1.94684134595043 1.77678065766527 1.65435298539874 2.12457131653599 1.8628156331122 2.42356301406500 2.36623944617146 2.32350651753391 2.23204560777785 2.69500014428549 2.49644770450822 1.90148767930837 0.211908300046955 0.212277744050754 0.215038503301722 0.213040169871347 0.210015120105433 0.207182157272616 0.216788001547291 0.208016688411589 0.213289374498615 0.211118039766837 0.211572771210058 0.213984436265725 0.216715559568889 0.208221841145269 0.207182157272616 0.207302021714855 0.209769547225391 0.219766917092113 0.214251531549894 4 4 - 12520064 12520590 12520345.727 12519942 12520823 - gene protein_coding_gene FALSE TRUE AT4G24110.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17020.1) 0.252834778394904 1.99354134881631 0.0718742463792506 1 1.08422975025997 3.95387818670480 0.252834778394904 0.160917095719694
AT4G24490_at 5.04305935560784 5.3841500611268 5.30506545354648 5.36970514761088 5.7564028520276 5.03744432109722 4.99035529479322 4.8798358189562 4.53522526672203 4.4822229360952 4.68112740982144 5.04431050135286 4.42341713267602 4.66772171063707 4.80989263994377 4.54377062269361 4.29942998021678 4.80396906070214 4.43765494392533 0.210648556899316 0.222801825020494 0.217488312479044 0.210923864823312 0.209699093029945 0.219712242361260 0.208281856043192 0.216664367954771 0.216011445866426 0.211859402354610 0.206847354420703 0.203983031955728 0.20847666593068 0.205134621873050 0.208397392448965 0.201984964306848 0.227066277021822 0.216926995923299 0.205435821816821 4 4 - 12655464 12656196 12655809.273 12655069 12658346 - gene protein_coding_gene FALSE TRUE AT4G24490.1|AT4G24490.2 protein binding / protein prenyltransferase similar to geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related [Arabidopsis thaliana] (TAIR:AT5G41820.1); similar to Rab geranylgeranyl transferase, a subunit [Rattus norve (GB:NP_113842.1); similar to Os06g0677500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058357.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein prenyltransferase, alpha subunit; (InterPro:IPR002088); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.233487405478735 1.99350620500653 0.0718785578145243 1 1.08417911492091 9.79287192034727 0.233487405478735 0.139482175314846
AT3G11500_at 6.76771835351165 7.11297673982547 6.71110080632883 6.7378422810789 7.05032257432074 6.87542036133519 6.67050863271423 6.84336738291757 6.83442152412282 6.83633276366145 7.3562547448976 7.57757748432353 7.44707218050849 7.41284553403836 7.31185110252384 7.34738394933079 6.69147795652903 6.9043563237992 6.97653127972648 0.143324804735109 0.143994686154304 0.139138304278258 0.142451281855424 0.140192181691894 0.138058391685371 0.14908560893747 0.143597101619504 0.151343836474499 0.153896565649859 0.141257385879584 0.139195884884941 0.138059761457621 0.149610410764509 0.139240622198681 0.140677621977751 0.139429787253055 0.149781624894629 0.143281599064974 3 3|0 -|/ 3621634 3622443 3621808.143 3621415 3622612 - gene protein_coding_gene FALSE TRUE AT3G11500.1 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to TonB box, N-terminal; Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABD32677.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.184351307756979 1.99347946503492 0.0718818384305187 1 1.08414058811210 13.9154226075028 0.184351307756979 0.0735002480392061
AT4G01370_at 9.6851071267856 9.82554504329472 9.81211634384155 9.86078510674742 9.42936251445562 8.9648135730293 9.041903661134 8.95207660804906 8.68480631268193 8.41696662003269 8.93159553014445 9.2075219013247 8.61970622690213 9.03388651181401 8.73701684507486 8.7347763518628 8.1266353797539 8.23117675363607 8.2773926441408 0.186971467752653 0.185314405007281 0.18732003603634 0.188294689979104 0.186584416025125 0.196380081160294 0.179879383861646 0.200708413311268 0.209994006806087 0.189212345019124 0.181429181915077 0.184549547241726 0.185730248268512 0.183518903965621 0.186012060137525 0.18612463412754 0.219086800313858 0.198961537547596 0.188583582194889 4 4 + 568155 568800 568499.091 567095 569088 + gene protein_coding_gene FALSE TRUE AT4G01370.1 ATMPK4 (MAP KINASE 4); MAP kinase/ kinase Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Identical to Mitogen-activated protein kinase 4 (EC 2.7.11.24) (MAP kinase 4) (AtMPK4) (MPK4) [Arabidopsis Thaliana] (GB:Q39024;GB:O04597;GB:Q45V20;GB:Q9M136); similar to ATMPK12 (Arabidopsis thaliana MAP kinase 12), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G46070.1); similar to double HA-tagged mitogen activated protein kinase 4 [synthetic construct] (GB:ABG54331.1); similar to double HA-tagged mitogen activated protein kinase 11 [synthetic construct] (GB:ABG54338.1); similar to mitogen-activated protein kinase 4 [Brassica napus] (GB:ABB69023.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 0.191839426657470 1.99207241862433 0.0720546605463818 1 1.08211362472504 18.0277193954251 0.191839426657470 0.0858264034349793
AT4G37930_at 13.0529742184770 13.1393149666081 12.9830435076759 13.0271089493519 13.1017599582219 12.8995797699449 13.6754479875335 13.7290079126928 13.8740424945194 14.0410139199023 14.0680460574225 14.0603566950043 13.9860206096457 13.995472690149 13.9646078489160 14.2365792508414 13.6719660784208 14.1042796153974 13.9390879548810 0.0697217905456127 0.0652160830078947 0.0722377203055973 0.065910826421094 0.067327660940761 0.0704266288887644 0.072360631512185 0.0663278377485409 0.0722309109926246 0.0668653799853016 0.0673783174775086 0.0666989381304519 0.0652160830078947 0.069355432239394 0.0672951969514422 0.066290910251577 0.071785561275058 0.0665688538786464 0.066864159199697 4 4|0 -|/ 17831923 17832849 17832353.7 17831725 17834921 - gene protein_coding_gene FALSE TRUE AT4G37930.1 SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants. Identical to Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) (SHM1) [Arabidopsis Thaliana] (GB:Q9SZJ5;GB:Q940M9); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.1); similar to Glycine hydroxymethyltransferase [Medicago truncatula] (GB:ABE84180.1); similar to Serine hydroxymethyltransferase, mitochondrial precursor (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) (GB:P50433); similar to Serine hydroxymethyltransferase 1, mitochondrial precursor (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) (GB:P49357); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) -0.168389287869427 -1.99125449728151 0.0721553009755222 1 1.08093561566447 27.1821784398927 -0.168389287869427 0.0398935038573403
AT3G62050_at 1.19771756160779 0.872707847745321 1.67491125921650 1.51508903663859 1.3603451804007 1.53251012097873 1.22207927265237 1.35734612597285 1.9748432836747 1.31758271695057 1.91199408637358 1.50179877914784 1.37501606177891 1.57793334515923 1.94494866399388 1.77887852430844 1.82927861176636 1.63880244313741 1.76298921410893 0.243013823390318 0.243723694099378 0.234380676210496 0.239665681009135 0.238393858477756 0.23838890453858 0.23744124098275 0.234915706997823 0.245242339345158 0.241412771656777 0.234380676210496 0.239360452308065 0.238636921595417 0.239519710301469 0.245931080102673 0.236440625356094 0.235339952814271 0.237754004844137 0.234380676210496 3 3|0 +|/ 22989390 22989778 22989598.6 22989221 22989998 + gene protein_coding_gene FALSE TRUE AT3G62050.1 similar to EDA32 (embryo sac development arrest 32) [Arabidopsis thaliana] (TAIR:AT3G62210.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96170.1); similar to Os03g0370200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050197.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.183972053430426 1.99101565035697 0.0721847144454973 1 1.08059165482509 3.03157316033641 0.183972053430426 0.0732396176341764
AT1G07500_at 3.24435200483642 3.44463648885766 3.44956225293338 3.40004483191228 2.57065972498314 3.18207213111944 3.58215165346375 3.08821397896022 3.54065346994263 3.81517709648758 3.63478375056079 2.92693200049093 3.11892092420255 3.12153261894655 3.21986641969317 3.16861433433459 3.7234758897284 3.56016033604742 3.40923519056629 0.214476970801148 0.209217976184148 0.208661439533182 0.209391575010657 0.216786494784265 0.212480145131831 0.221629844337367 0.208962624223089 0.218985211561105 0.208637869603668 0.210471153291958 0.208299952933484 0.216102405224511 0.211061329646834 0.214860547849209 0.215436501963134 0.217538725690542 0.21485042254828 0.218090677937 1 1 - 2304764 2304986 2304864.364 2304763 2305028 - gene protein_coding_gene FALSE TRUE AT1G07500.1 unknown protein -0.234161632187031 -1.99071128459525 0.0722222126408671 1 1.08015336581157 6.69403215167464 -0.234161632187031 0.140629186708500
AT1G64900_at 9.68151403637954 9.80800426946857 9.89757949089564 10.0447748901285 9.43035976394157 9.46655203805313 10.1873537119593 10.3622248564887 9.51067942579975 9.92436336317006 9.52455819659085 9.44522480774464 9.550289100012 9.5717136210017 9.38271678512898 9.85266075757006 9.83738533729075 9.67716377068456 9.50342492163894 0.090092115315538 0.0913939092661587 0.0964006352999524 0.0912789533010445 0.0918854662020051 0.0918530747096963 0.0915397536753654 0.0946223882359837 0.106361212976158 0.0916933762652387 0.0925431435053526 0.0911852826332141 0.0879408913043232 0.0934953717928534 0.0941139009149019 0.0886165176467213 0.0928972411302678 0.0942970757760684 0.0879408913043232 1 1 + 24117890 24118397 24118177.364 24116878 24118647 + gene protein_coding_gene FALSE TRUE AT1G64900.1 CYP89A2 (CYTOCHROME P450 89A2); oxygen binding Encodes cytochrome P450 (CYP89A2). Identical to Cytochrome P450 89A2 (EC 1.14.-.-) (CYPLXXXIX) (ATH 6-1) (CYP89A2) [Arabidopsis Thaliana] (GB:Q42602;GB:Q9XIQ6); similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.17044976467631 -1.99062626599738 0.0722326902750572 1 1.08003094334772 19.4854803574340 -0.17044976467631 0.0456405429843868
AT4G39320_at 1.44447894242681 1.35623512514638 1.53772214937731 1.72347157426527 1.43525079932916 1.84421814661313 1.4090865321019 1.59982944873800 2.04416277477989 2.1600374443794 2.20389602292053 1.9061071280682 1.80982210871660 2.52862733193466 2.00635145830385 2.15998873417527 2.32815416865184 2.0370259271717 1.56143141137654 0.199026584672382 0.204742224888441 0.205736889283356 0.209381039881491 0.20265219707629 0.205365815438806 0.205434888576278 0.204276785062437 0.201219049190971 0.203756927720079 0.210001068690408 0.204760437777145 0.208735191788104 0.210630886732272 0.203759385629924 0.199676506695461 0.207557639646386 0.203734892091774 0.202303325041255 4 4|0 +|/ 18289124 18289639 18289414.5 18289049 18289851 + gene protein_coding_gene FALSE TRUE AT4G39320.1 microtubule-associated protein-related similar to hypothetical protein [Plasmodium falciparum 3D7] (GB:NP_702720.1) 0.191688777553583 1.99055427046313 0.0722415640656704 1 1.07992727512967 3.56597349983547 0.191688777553583 0.0858195808037953
AT1G07110_at 10.9336093073798 10.872015991284 10.7083343108450 10.6184741307677 11.1185058928248 10.6707911315275 11.2688130453588 11.1313323910499 10.5126048829458 10.9434705655177 10.4941854806843 10.6092301793357 10.7394310985094 10.6905101353638 10.4818077491710 10.8829826497689 10.8054010448155 10.4865923735527 10.8124150179621 0.0734227810240515 0.0715500817047283 0.0746384345396922 0.0741570978591497 0.071806684556623 0.0750473894754727 0.0746537132836198 0.073620381916994 0.0874544228916676 0.0723689294420713 0.073436867253307 0.0713500309835304 0.0713500309835304 0.0713500309835304 0.0763692223766062 0.0724789092524411 0.0761485539376679 0.0757260088516987 0.0724441593975773 1 1|0 -|/ 2178577 2180306 2179140.429 2178103 2184147 - gene protein_coding_gene FALSE TRUE AT1G07110.1 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase. similar to fructose-6-phosphate 2-kinase-related / fructose-2,6-bisphosphatase-related [Arabidopsis thaliana] (TAIR:AT3G30200.1); similar to fructose-6-phosphate 2-kinase /fructose-2,6-bisphosphatase [Spinacia oleracea] (GB:AAC18055.1); similar to fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Bruguiera gymnorrhiza] (GB:BAB55655.1); similar to 'putative 6-phosphofructo-2-kinase (EC 2.7.1.105) / fructose-2, 6-bisphosphate 2-phosphatase (EC 3.1.3.46)' [Oryza sativa (japonica cultivar-group)] (GB:AAT07663.1); contains InterPro domain Fructose-2,6-bisphosphatase; (InterPro:IPR003094); contains InterPro domain 6-phosphofructo-2-kinase; (InterPro:IPR013079); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.189906108592638 -1.98948902005151 0.0723729802384275 1 1.07839357551487 21.6177000639840 -0.189906108592638 0.0832135697153988
AT2G14530_at 4.0338877069009 3.62424153133270 3.69988778691557 3.51632404506705 3.4814609495159 3.76669272030757 3.8058357607062 3.57050163277691 4.20748452438618 3.70228336909104 4.76154499301619 4.81906362383682 4.24931260809182 4.6637543026914 4.83144062501659 4.74758153616963 4.30326439240338 3.85811751048475 4.03971343472536 0.206283337797555 0.205261515687923 0.207638823733133 0.207401456606565 0.206439260923732 0.205967920116783 0.204605692055483 0.199796059571497 0.200212181122536 0.208048793007536 0.199632807905342 0.20625057730765 0.199632807905342 0.207405723305739 0.202341063410579 0.199632807905342 0.211456260936270 0.204322875974298 0.20263865349866 2 2 + 6195585 6197156 6196601.909 6194503 6197462 + gene protein_coding_gene FALSE TRUE AT2G14530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64470.2); similar to Os07g0498900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059712.1); similar to Os02g0117900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045691.1); similar to Protein of unknown function DUF231, plant [Medicago truncatula] (GB:ABE84785.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.201787111875987 1.98924542727612 0.0724030627580625 1 1.07804290947204 7.94356421253936 0.201787111875987 0.100646567824940
AT2G21940_at 5.52371600283944 5.62033211200914 5.47520756602195 5.19463327116523 5.86473511682187 5.36867912011612 6.15788796610084 5.73938063175361 4.82320891749563 5.40548253057191 5.0971230955694 4.71440633689093 4.87230428761573 5.45249309116012 4.33098689637907 4.90941785672783 5.48448077632393 4.7991100580991 5.10711838057109 0.219073362576540 0.210650608948011 0.2223781898679 0.216903629765905 0.216774164517083 0.221688322302042 0.214630084828884 0.225509471831751 0.231987583297779 0.225463232001836 0.216114121327789 0.210650608948011 0.228116359055423 0.222145570312039 0.224187058077297 0.217542107168335 0.224031935508550 0.210650608948011 0.223963312377228 2 2|0 +|/ 9358819 9359773 9359426.625 9357632 9360311 + gene protein_coding_gene FALSE TRUE AT2G21940.1|AT2G21940.2|AT2G21940.3|AT2G21940.4|AT2G21940.5 shikimate kinase, putative|ATP binding / shikimate kinase Identical to Probable shikimate kinase, chloroplast precursor (EC 2.7.1.71) [Arabidopsis Thaliana] (GB:Q9SJ05); similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623)|similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to Shikimate kinase, chloroplast precursor (GB:Q00497); contains InterPro domain Shikimate kinase; (InterPro:IPR000623)|similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) -0.219455859672458 -1.98907994194089 0.0724235060489528 1 1.07780469382846 10.6528099280495 -0.219455859672458 0.123498063253826
AT2G17960_at 2.56806399883686 2.91172669257409 2.45150634386749 2.7513009987855 2.57883972156157 2.96103232188837 2.54919073467928 2.69679163675060 2.80408630853976 3.00824824724456 2.49619441010052 2.52733324720340 2.49839704781628 2.74994806443097 2.47609050862611 2.85875229134800 2.24374625375675 2.12247894938665 2.92472950089945 0.211235739864233 0.217714368654753 0.216117024143319 0.202560288854696 0.210633123177300 0.215453418764518 0.216825691798471 0.226048661488671 0.203539476529542 0.203729061247334 0.202560288854696 0.211716050413803 0.204774695355780 0.210580811703564 0.21116269527637 0.218919409614038 0.210465359622436 0.203386885915869 0.202560288854696 2 2|0 -|/ 7819470 7820092 7819944.333 7819462 7820211 - gene protein_coding_gene FALSE TRUE AT2G17960.1 unknown protein -0.205755254081073 -1.9887633188083 0.0724626352228873 1 1.07734893872368 5.38804269719039 -0.205755254081073 0.106092261103214
AT2G28420_at 1.71736637246042 1.66666930330622 1.70750135197659 1.71678836067460 1.76265142272736 2.25284408301801 1.75970617603003 1.46252622502809 1.45984321319735 1.22260896684007 1.3943594714893 1.31400003308757 1.11301560466251 1.61530901542182 1.48860116979583 1.69877162013396 1.60430516794409 1.84120354703831 1.26289064717518 0.185501271933715 0.18454177008363 0.188251350995219 0.183972322006171 0.188456959603893 0.192101969319778 0.192141842805217 0.184718410063466 0.189342515592739 0.180705992493443 0.181604752250126 0.184265899526782 0.183148097426583 0.185430891827598 0.184000210219084 0.178798370009536 0.184257579279138 0.200006536791610 0.184830368607811 2 2 + 12165057 12165452 12165245.909 12165000 12165868 + gene protein_coding_gene FALSE TRUE AT2G28420.1 lactoylglutathione lyase family protein / glyoxalase I family protein similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT1G80160.1); similar to Os05g0171900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054776.1); similar to Os07g0657100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060509.1); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABE86507.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.200980356676048 1.98873606774718 0.0724660039076936 1 1.07730971428665 3.16766165161977 0.200980356676048 0.0996021238578363
AT4G22590_at 5.51584611404956 5.54526413029093 4.99702520822357 5.10050025263847 4.36366373624551 4.42044906200023 4.55307051961082 4.76131277284705 4.78986970907079 3.98921182241454 4.54264454276858 5.17272775614539 4.23901086252087 4.46953905001825 4.19318135107849 4.126280934025 4.20736260139020 4.3693120684396 4.35841903603734 0.212350153482038 0.210465885204784 0.220957164298716 0.205931624615305 0.208754910303101 0.213653554072568 0.210522271073545 0.204359760250516 0.214108569044762 0.205972830557021 0.204359760250516 0.211333790718041 0.211425820634275 0.205156359189636 0.205750531819575 0.20584097559711 0.207201722122169 0.211763117053068 0.206223226318674 4 4|0 -|/ 11893894 11894541 11894201.5 11893510 11896491 - gene protein_coding_gene FALSE TRUE AT4G22590.1 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G12430.1); similar to trehalose-phosphate phosphatase [Nicotiana tabacum] (GB:AAU03490.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) -0.168811639732617 -1.98857971091457 0.0724853350412963 1 1.07708466282678 9.30422860030786 -0.168811639732617 0.0417352147013193
AT1G74020_at 6.73304659314188 7.14258369165897 6.84017354345864 6.80054039115155 5.38609924088519 5.41046691406165 5.36943879344422 5.67904098110929 4.51010998488741 4.58781506874809 3.8614631730844 4.11697452315647 4.25700346644603 3.91684458419381 4.11404921494318 4.22046756316474 4.33716659955235 4.55309692314776 4.2157764721223 0.24237154328664 0.238084203729772 0.232475741094456 0.238002245096107 0.221094776588771 0.222924714338515 0.221094776588771 0.223155671357907 0.225654664868808 0.221094776588771 0.229814413866610 0.228554072439877 0.231965797130324 0.228442684103663 0.226916692422151 0.22300877527691 0.231898429096484 0.22301504170322 0.221094776588771 1 1 - 27838954 27839404 27839182.364 27838792 27840978 - gene protein_coding_gene FALSE TRUE AT1G74020.1 SS2 (STRICTOSIDINE SYNTHASE 2); strictosidine synthase Encodes AtSS-2 strictosidine synthase. Identical to Strictosidine synthase 1 precursor (EC 4.3.3.2) (SS-1) (SS1) [Arabidopsis Thaliana] (GB:P94111;GB:Q9C9C3); similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G74010.1); similar to strictosidine synthase (GB:AAB40593.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.193737372537085 -1.98857811511887 0.0724855323618703 1 1.07708236596378 10.4751906508874 -0.193737372537085 0.0892094223693296
AT4G27180_at 7.81040727322089 8.34202674591345 7.68609154731853 7.7252467610103 8.90288846071747 8.15171614179775 8.96701379379994 8.78791240496358 7.97134867207924 8.77537653320965 8.58419114440674 8.55973203337513 8.62634489933506 8.04836511653876 8.0827919439728 8.60864649975841 8.08240068920415 8.58813183088058 8.88617728020803 0.187402936446699 0.175228831005251 0.185141562162762 0.184621747866269 0.174348456450944 0.181262933192056 0.175672765023566 0.172818786983364 0.208098988347628 0.180889960394868 0.171909672706053 0.173604241519323 0.172595456937449 0.190710361933147 0.180026142076520 0.171909672706053 0.181920207754738 0.186633010727621 0.179323154115540 4 4|0 -|/ 13615076 13615884 13615389.667 13614866 13619162 - gene protein_coding_gene FALSE TRUE AT4G27180.1 ATK2 (ARABIDOPSIS THALIANA KINESIN 2); microtubule motor kinesin heavy chain subunit Identical to Kinesin-2 (Kinesin-like protein B) (ATK2) [Arabidopsis Thaliana] (GB:P46864;GB:Q9T047); similar to ATK5 (Arabidopsis thaliana kinesin 5), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G05190.1); similar to ATK3 (ARABIDOPSIS THALIANA KINESIN 3), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G54670.1); similar to ATK1 (ARABIDOPSIS THALIANA KINESIN 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G21270.1); similar to H0323C08.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86215.1); similar to Kinesin, motor re (GB:ABE93171.1); similar to Os04g0629700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053970.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.253539817789233 -1.98834805759787 0.0725139842850916 1 1.07675124725176 16.7676010651842 -0.253539817789233 0.162384813975973
AT4G35510_at 5.65630949642317 5.51585936164757 5.55016725045965 5.53775468956287 5.67283226027809 6.11341920180659 5.91132994820707 5.83514691425832 4.97767936937066 4.78676648245429 5.63733442450388 5.60326123104894 5.48821359674573 4.93202667186392 5.00571647237372 5.55353565512229 5.27434131082112 5.18719961138862 5.07713076483744 0.201348924929990 0.208885040823589 0.205365781788934 0.200459765532554 0.198542926209361 0.201818452182188 0.20278311785473 0.200959439365425 0.219734041148551 0.212990238381164 0.207963964451425 0.203640542674447 0.199335195056535 0.202539276802318 0.200740725913008 0.205405950883597 0.204820790895987 0.207799302085199 0.205940251950879 4 4 - 16860720 16861259 16860966.455 16860457 16862377 - gene protein_coding_gene FALSE TRUE AT4G35510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17540.1); similar to Os06g0728500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058643.1) 0.188446668286084 1.98795887128174 0.0725621398954356 1 1.07619113285557 10.8653003039742 0.188446668286084 0.0811331166801183
AT1G68850_at 1.53091531821195 0.993761755834116 1.00831329599015 0.837652835290991 0.941425427553496 0.857640914696782 1.01256571874444 0.99787027628446 1.23075247583770 1.55748660083029 1.09290016889841 0.776374185758781 1.27022916852976 1.30361942967124 1.24822467367353 1.40650969819822 1.50633391546841 0.83403006537445 1.28466389949476 0.209033092405438 0.205366991864975 0.206584209360941 0.210364351845711 0.205339794405384 0.208918195564689 0.201977214894108 0.209978233763157 0.202416728690156 0.208038516301488 0.203817110660499 0.206727020020675 0.209516543333993 0.203480487066542 0.203018686505400 0.205570098169851 0.203060097154995 0.209881194950039 0.20650584637596 1 1 - 25887559 25888170 25887830.727 25887279 25888910 - gene protein_coding_gene FALSE TRUE AT1G68850.1 peroxidase, putative Identical to Peroxidase 11 precursor (EC 1.11.1.7) (Atperox P11) (ATP23a/ATP23b) (PER11) [Arabidopsis Thaliana] (GB:Q96519;GB:P93723); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G36430.1); similar to peroxidase 40 (PER40) (P40) [Arabidopsis thaliana] (TAIR:AT4G16270.1); similar to putative peroxidase [Festuca pratensis] (GB:CAH55692.1); similar to Os06g0274800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057377.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.200188405538435 -1.98773196827603 0.0725902293044399 1 1.07586459657808 2.29122418711789 -0.200188405538435 0.0986403603508681
AT2G30960_at 5.3893635994345 5.05693266531281 5.37678268579559 4.70551752478167 5.22849682815487 5.12121165307235 5.33812931535315 5.25070191482181 5.96076702531733 5.71709259367159 5.30595016556881 5.47639884919827 5.27590277688174 5.2926900057732 5.31478343258789 5.4702660691364 5.15941455892314 5.51381683462488 5.28005410018815 0.198106196054657 0.194172398256928 0.194082371782391 0.205932268695579 0.210172051462315 0.201383140420262 0.212792389031546 0.200569018227080 0.19901191318604 0.200432413570018 0.193857627416550 0.196826589490262 0.201638819794869 0.197838674924831 0.192753953076443 0.192753953076443 0.198795657176394 0.193753365090291 0.196840160503149 2 2 - 13184684 13185112 13184914.545 13184256 13185405 - gene protein_coding_gene FALSE TRUE AT2G30960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06420.1); similar to Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases; Mnn4p [Saccharomyces cerevisiae] (GB:NP_012721.1); similar to MNN4 [Saccharomyces cerevisiae] (GB:CAA82046.1) -0.226132385292505 -1.98681065996455 0.0727043867790598 1 1.07453890046934 10.6852873948304 -0.226132385292505 0.131824144690162
AT3G30360_at 2.31878329434789 1.75858414623504 2.27413028248766 2.05317801412418 1.95276806045765 2.19529354367844 1.93819891937166 1.61217887839130 2.15550821094614 1.67181159492947 2.12227972460022 1.96258466359026 2.20051033634538 1.95899345232002 2.23548698941712 1.96694596889166 2.57628762797056 2.39973956628461 2.01612447716418 0.185690985285052 0.182437572893447 0.185836935898898 0.187816438848797 0.183971567108658 0.187244499091079 0.184830584335068 0.185812205697204 0.18483837709099 0.191868667648849 0.185939523155425 0.185442599371074 0.196245326596392 0.184876083498098 0.188454721528118 0.183545838297138 0.186158696562731 0.182437572893447 0.191110449391172 3 3|0 +|/ 11967004 11967141 11967075.5 11967002 11967542 + gene protein_coding_gene FALSE TRUE AT3G30360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1) 0.220972472882364 1.98630115267553 0.072767590748359 1 1.07380586617517 4.07572354348209 0.220972472882364 0.125718069557535
AT2G18040_at 10.3795868161732 10.564588615984 10.8243349221004 10.7052223021643 10.9198691701026 10.5267058230555 10.7370017187419 10.5351655526202 10.0717065753168 10.0199749263062 10.1198627457033 10.1642697619130 10.1459208247115 10.1354647970337 10.1489751655602 10.1957326907819 10.2110263364611 10.2503099148412 9.8465214501154 0.0745519867875006 0.0720879206775319 0.0729610603452923 0.0770015155645558 0.0718550239939682 0.075310465468352 0.0724707767476172 0.0714349089406693 0.0805100758714105 0.0737691195494652 0.0731835989909566 0.0722951070678362 0.0711236915803481 0.0762856021072102 0.0726455673269265 0.0730544176557151 0.0796502267351212 0.0744171724764788 0.0725008941394031 2 2|0 +|/ 7849438 7850530 7849643.3 7849246 7850952 + gene protein_coding_gene FALSE TRUE AT2G18040.1 PIN1AT (parvulin 1At) phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds Identical to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (PIN1At) (PIN1) [Arabidopsis Thaliana] (GB:Q9SL42;GB:Q42334); similar to peptidyl-prolyl cis-trans isomerase PPIC-type family protein [Arabidopsis thaliana] (TAIR:AT1G26550.1); similar to Peptidyl-prolyl cis-trans isomerase 1 (Rotamase Pin1) (PPIase Pin1) (MdPin1) (GB:Q94G00); contains InterPro domain PpiC-type peptidyl-prolyl cis-trans isomerase; (InterPro:IPR000297) 0.190995837094390 1.98595157338993 0.0728109854363822 1 1.07330296753842 20.7244824968870 0.190995837094390 0.0854351679476102
AT4G34680_at 5.77919201637456 5.80123566155983 6.04272399646644 6.0211855576844 5.88378863046404 6.26548513186088 6.23033128892039 6.68652310097082 4.97066032131522 5.09209450034103 4.82667476426369 4.79995249771115 4.95171618384583 4.94812041290953 4.0467877373173 5.40493095628095 5.01920467788839 4.61959725070081 5.42478419747878 0.216101147889810 0.203979110594782 0.212919234773672 0.207158387199976 0.203979110594782 0.213750026494794 0.213863821032172 0.203979110594782 0.211981453615941 0.210733793870979 0.206164773443237 0.21204601714665 0.210808877078511 0.207219438477128 0.209874064343419 0.20464333484315 0.212096858734598 0.216947143094594 0.210925047272336 4 4|0 +|/ 16553937 16554474 16554236.1 16553395 16554745 + gene protein_coding_gene FALSE TRUE AT4G34680.1|AT4G34680.2 GATA transcription factor 3, putative (GATA-3) Identical to GATA transcription factor 3 (AtGATA-3) (GATA3) [Arabidopsis Thaliana] (GB:Q8L4M6;GB:O49742;GB:O65690); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G66320.2); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT4G36240.1); similar to Zinc finger, GATA-type [Medicago truncatula] (GB:ABE89629.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -0.203207317050548 -1.98578632958615 0.0728315062222215 1 1.07306526353667 11.0836262062842 -0.203207317050548 0.103073341540956
AT1G56320_at 2.61699534279482 2.53730182069697 2.53776264784962 2.63899136588647 2.40797795822948 2.47610877562712 2.54285315293159 2.27932054685902 1.77631637296897 2.00392773500362 2.13980146007501 2.28119681547132 2.10795805858125 2.74389455838758 2.49235191955327 2.29851808904349 1.72259016677685 2.32372346215651 2.03810887582996 0.216643049419712 0.215779264555685 0.218827032952221 0.225208613825443 0.230016622182954 0.216480522362678 0.224868783645793 0.222607607661602 0.233550523574871 0.228476148988533 0.217287876635600 0.216710168908822 0.22310793398948 0.21798143289919 0.219740911754312 0.217822289261386 0.232210207829886 0.220329934106423 0.222158691760145 1 1|0 -|/ 21089392 21090072 21089674.8 21089213 21090159 - gene protein_coding_gene FALSE TRUE AT1G56320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84262.1) 0.172697896366191 1.98562265281176 0.0728518377275613 1 1.07282982184224 4.60626660678764 0.172697896366191 0.0521149037476265
AT3G58210_at 1.75402576572851 1.38536576445838 1.60524138484690 2.04713617951648 1.38542820981512 1.75607822420242 1.62480096867479 1.27484836308054 1.71535966133890 1.82012972682092 1.66070561252571 2.01584344989787 2.04363376615262 1.87579913432812 2.29986862672887 1.69601224606001 1.79644574567535 1.91483658738444 1.40723302532982 0.176978470578053 0.176541225396709 0.178551686669647 0.178048100140255 0.183659895349172 0.187161727207439 0.176541225396709 0.176985321855462 0.181629203604202 0.179031158558283 0.18518659022495 0.182955844683881 0.181773428644741 0.184451914224262 0.178829269459823 0.186102911581725 0.186065926884227 0.179988812723211 0.191204798103741 3 3 - 21573630 21574259 21573963 21573419 21575044 - gene protein_coding_gene FALSE TRUE AT3G58210.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58270.2); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) 0.227014896186962 1.98549986779973 0.0728670932410224 1 1.07265320642424 3.38434924950239 0.227014896186962 0.133041727205959
AT3G25880_at 1.75657815510251 1.5408474816319 1.36030474950659 2.08502576773961 1.61888329246328 1.70823029760767 1.75681123594838 1.76680482226474 2.14362089132572 2.00350654919235 1.62054928723789 1.52748917318921 1.55203135304728 1.67234068001596 1.45624987390324 1.62287361314099 1.55472533641691 1.67796261062487 1.92829689523762 0.184483553913928 0.187569991520033 0.185504943290622 0.184322174602756 0.180339254189887 0.186641306732461 0.180406514019292 0.180986390259142 0.188490567110514 0.186016758389544 0.186844373392133 0.180789140592166 0.186009652631119 0.192949763558036 0.187558947427932 0.190600302158541 0.184223778368428 0.201937905403964 0.194689584646462 3 3|0 -|/ 9470971 9471228 9471045.111 9470950 9471270 - gene protein_coding_gene FALSE TRUE AT3G25880.1 auxin-resistance protein, putative similar to AXR1 (AUXIN RESISTANT 1), small protein activating enzyme [Arabidopsis thaliana] (TAIR:AT1G05180.1); similar to putative auxin-resistance protein [Populus trichocarpa] (GB:ABG37639.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) -0.225881550606225 -1.98495929484764 0.0729342925838224 1 1.07187569404718 3.50452031838256 -0.225881550606225 0.131776670723793
AT2G44670_at 8.28340743956566 8.86359758766447 8.07771428207886 8.04617526507571 8.94074297235856 8.566865342178 9.26330440102945 9.30787570053966 9.30167263015477 8.31019314170063 9.25203814371954 9.5079590032674 8.62242039628985 9.15109902573632 8.63647235067202 9.2207502818385 7.7176370223418 8.67442214913008 8.66242729990625 0.148250251032049 0.143404848596462 0.153581382041587 0.163309894598039 0.149020563503922 0.149896153690482 0.150081833044079 0.149992469578222 0.154058525805182 0.153624571302127 0.147980514212170 0.150642453888642 0.145825363412057 0.148129270234868 0.148895530454063 0.153852118545671 0.170060587970981 0.143404848596462 0.152896127109663 2 2 + 18432354 18432720 18432496.545 18432255 18433135 + gene protein_coding_gene FALSE TRUE AT2G44670.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G17670.1); similar to hypothetical protein 40.t00027 [Brassica oleracea] (GB:ABD65149.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) -0.215959855369904 -1.98439892310631 0.0730040141839316 1 1.07106979808945 17.4716841174171 -0.215959855369904 0.119819130264402
AT1G07320_at 11.0463433668264 11.0089824686334 10.3693375552846 10.3637567449722 11.0399867795896 10.8214567640653 11.3174229433422 11.2554586190379 11.2898266186334 11.2738913752152 11.5570804212504 11.7477200703940 11.3402581041813 11.2282680108767 11.9948022359615 11.4625401399833 11.0624092591527 11.4084143597236 11.3432939737865 0.0590784419302569 0.0578800220816704 0.058730026255227 0.0578995622607341 0.0593389781708735 0.0594336577552817 0.0601510842372765 0.0589188163260986 0.0591972426045748 0.0589753558986075 0.0582595661702767 0.0588131535222578 0.0596270774574574 0.0621180285157173 0.0582982435028487 0.0578800220816704 0.0625603054824232 0.0578800220816704 0.0588347993530938 1 1 + 2249442 2249963 2249688.818 2249132 2250526 + gene protein_coding_gene FALSE TRUE AT1G07320.1|AT1G07320.2|AT1G07320.3|AT1G07320.4 RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV1); similar to ribosomal protein L4 family protein [Arabidopsis thaliana] (TAIR:AT2G20060.1); similar to 50S ribosomal protein L4, chloroplast precursor (R-protein L4) (GB:O49937); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136)|Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV1); similar to ribosomal protein L4 family protein [Arabidopsis thaliana] (TAIR:AT2G20060.1); similar to ribosomal protein L4 [Spinacia oleracea] (GB:CAA63651.1); similar to 50S ribosomal protein L4, chloroplast precursor (R-protein L4) (GB:O49937); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136) -0.167784067918332 -1.98428096655085 0.0730186982910657 1 1.07090017153006 22.2916051040867 -0.167784067918332 0.0398484160432707
AT3G28680_at 2.92554861062308 3.18901564797688 3.21437179336585 3.38219140167425 2.57386179252045 3.03037211297877 2.71217806988833 3.03740569701909 2.26952519723622 3.31292860588838 2.64530849223301 3.35362554044145 3.40392981859004 3.1249472509994 3.01805340618283 3.00929182136464 3.34069136400988 3.6132723251788 2.98181626364798 0.247628319295459 0.264871406224748 0.247285504958328 0.255898189129005 0.248704696158209 0.262565163742059 0.252520935955538 0.265963171732722 0.255952745902480 0.245570790253356 0.246490471639485 0.249327245524585 0.245570790253356 0.250117476184947 0.246337248355322 0.245570790253356 0.254220050939173 0.255873958774565 0.246914672149994 3 3|0 -|/ 10750166 10750853 10750533.556 10749988 10750971 - gene protein_coding_gene FALSE TRUE AT3G28680.1 prolylcarboxypeptidase-related similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT5G22860.2); similar to PREDICTED: prolylcarboxypeptidase isoform 8 [Macaca mulatta] (GB:XP_001096750.1); similar to Os01g0767100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044360.1); similar to PREDICTED: prolylcarboxypeptidase isoform 2 [Macaca mulatta] (GB:XP_001096073.1); contains InterPro domain Peptidase S28; (InterPro:IPR008758) 0.209022791104398 1.98403390757099 0.073049462957411 1 1.07054490381991 6.02981648640544 0.209022791104398 0.111045684370482
AT2G42440_at 1.29125007495609 1.18684681626363 1.60372171059739 1.48569478031693 1.28073817307193 1.80465075366188 1.33473507327133 1.00784546008181 1.46985038373738 1.15653254604403 1.66169400970867 1.73405449555047 1.51850302414266 1.13176386276991 1.34931286784840 1.8708774655468 1.66199786083683 1.61430574526944 1.84221007107627 0.227918186088603 0.228094942055217 0.233486775021658 0.228263102662523 0.232365986049702 0.232298999221461 0.226260685161145 0.238861785097340 0.24299135102976 0.232250805777259 0.231712651636375 0.226260685161145 0.226260685161145 0.231125864901707 0.229475156301644 0.226260685161145 0.232581460058304 0.236596638493110 0.234345347335764 2 2 - 17676032 17676646 17676241.364 17675920 17676794 - gene protein_coding_gene FALSE TRUE AT2G42440.1 LOB domain protein 17 / lateral organ boundaries domain protein 17 (LBD17) Identical to LOB domain-containing protein 17 (LBD17) [Arabidopsis Thaliana] (GB:Q9SLB6;GB:Q8S9M2); similar to ASL16/LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29, LOB DOMAIN-CONTAINING PROTEIN 29) [Arabidopsis thaliana] (TAIR:AT3G58190.1); similar to Os03g0149000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048970.1); similar to Os08g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062526.1); similar to adventitious rootless1 [Oryza sativa (japonica cultivar-group)] (GB:AAV49505.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.208407332221035 1.98369058918130 0.0730922342701115 1 1.07005124696261 2.90310768865014 0.208407332221035 0.110290495823570
AT4G34970_at 2.91800338463406 2.94428041251159 2.71607112887163 2.66650643046032 4.15032772282876 4.04090738482699 2.73311809475591 2.37122782330077 2.00433253502544 2.80169082664233 2.89656479271773 2.05182269315554 2.25990862594170 2.4989658887228 2.13439897117385 2.74432069947062 2.56839754055749 2.27840492297359 3.36079480734721 0.217482162509545 0.212585622823294 0.204730113251717 0.208097098156984 0.223247557436901 0.216671235206605 0.208074087110065 0.209480991928586 0.229686242170874 0.209192050706298 0.217194412357852 0.215431808657554 0.207108147994075 0.204730113251717 0.209576317565288 0.206328485061964 0.204730113251717 0.213651177957697 0.204730113251717 4 4|0 +|/ 16653986 16654574 16654200.556 16653709 16654858 + gene protein_coding_gene FALSE TRUE AT4G34970.1 actin binding similar to ADF5 (ACTIN DEPOLYMERIZING FACTOR 5), actin binding [Arabidopsis thaliana] (TAIR:AT2G16700.1); similar to Os03g0243100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049525.1); similar to actin depolymerizing factor [Elaeis guineensis] (GB:AAF60173.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.179310515890258 1.98325677485417 0.0731463131694405 1 1.06942751721546 5.64324066769584 0.179310515890258 0.0661432312876758
AT1G53320_at 10.4599812008149 10.6300940941164 10.2280216272095 10.2370452231333 10.4944381532953 10.4643572274500 9.59502146582697 9.88796009393784 9.93161422118044 9.81769042552324 10.0907794716325 9.94051237615666 10.0039567883272 10.0432805990286 9.7669761747116 9.93194990190923 9.72700982953078 10.0715514446550 9.67626010053136 0.0779099723378835 0.077287509654739 0.0796089325189519 0.0793109942060184 0.0800875006124045 0.079736259297835 0.0785307777857615 0.0810261450433287 0.0813909801950826 0.0780578786496339 0.0776881394271184 0.0777557497265176 0.0760438731646381 0.0801400314548467 0.0778554293285046 0.0752758657839902 0.0835124858954881 0.0755698574041258 0.0779925434008295 1 1 - 19894906 19895376 19895078.455 19894682 19897172 - gene protein_coding_gene FALSE TRUE AT1G53320.1 AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP3 (TUBBY LIKE PROTEIN 3), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G47900.2); similar to Tubby; Di-trans-poly-cis-decaprenylcistransferase; Cyclin-like F-box [Medicago truncatula] (GB:ABD32973.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) 0.175590917465136 1.98306364471282 0.0731704006039475 1 1.06914985682031 20.1273767135508 0.175590917465136 0.0588736248608576
AT3G24110_at 2.29079793077807 2.2901621957723 2.39486579674532 2.17392008723209 1.91268479095032 2.40757442213306 1.91502643131368 2.09499994275168 2.80117745061812 2.00233380842440 2.7630608454731 2.87211087781078 2.580868845598 2.77418179220752 2.88308337699266 3.08901226982463 2.93272407544188 2.75622535917773 2.71517969874483 0.213416942594286 0.213205387413430 0.212184267792855 0.211769689834759 0.207275712360231 0.214004175408601 0.206468266145439 0.211572530441540 0.213242791823629 0.215852272072888 0.205991895060924 0.206200845664193 0.207196323657647 0.209106697699335 0.21713796041566 0.211973525001245 0.217987373616362 0.21712367422143 0.205991895060924 3 3|0 -|/ 8704460 8705227 8704771.6 8704436 8705420 - gene protein_coding_gene FALSE TRUE AT3G24110.1 calcium-binding EF hand family protein similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G26470.1); similar to Os06g0609600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058046.1); similar to Os02g0198200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046205.1); similar to VU91B calmodulin [synthetic construct] (GB:AAC68890.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.199846380082303 1.98301383379338 0.0731766142849114 1 1.06907824621954 4.85382332449868 0.199846380082303 0.098826732578497
AT1G12450_at 3.70832646180292 4.06159276233524 2.72981578083177 3.34789269974655 4.66895649891412 4.00300321923362 4.21904625827073 4.02225596364 3.9969789662769 2.90750825698883 4.56228590947261 4.41357148657302 4.3423257822801 4.85448175862946 3.67460965546671 3.77182700482514 3.99292551096349 3.45525442039961 2.97771830875961 0.248279992044804 0.249597367393649 0.258428598734697 0.249171966651256 0.254764778194624 0.278709241390538 0.249937613477989 0.248021913648035 0.274073775057319 0.250678099678333 0.254306605970427 0.253428233695256 0.248021913648035 0.249616394217151 0.250654533205425 0.248021913648035 0.253147030994839 0.24840082167316 0.250245518896769 1 1 + 4245021 4245704 4245401.545 4244306 4245991 + gene protein_coding_gene FALSE TRUE AT1G12450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22850.1); similar to At1g12450-related [Medicago truncatula] (GB:ABE81486.1); contains domain UNCHARACTERIZED (PTHR12677) 0.261976684285224 1.98293607208930 0.0731863156806647 1 1.06896645371455 7.55885055647256 0.261976684285224 0.172103393682932
AT1G31680_at 2.25465731852105 2.04935241014691 1.54401538390838 1.55280139330248 1.50957950109135 1.61800925454784 1.48537453107533 1.67032641739455 2.24029202795713 1.51184031158315 1.53447359325334 1.75937425637780 1.88194176440358 1.58084346073491 2.20678363969705 1.69196126610585 1.52939155847658 1.90235652362529 1.63694720888908 0.198004114623861 0.200629620252804 0.201566086339528 0.198685823443764 0.191202650497233 0.201582293846997 0.189530342899521 0.195179452669058 0.210873797996134 0.191249574783023 0.192094806549571 0.194578019575913 0.197101430545155 0.193641008206298 0.193580580862392 0.193435566107980 0.199871331533233 0.192818368236718 0.196315913214265 1 1 + 11344150 11344705 11344399.364 11343961 11344746 + gene protein_coding_gene FALSE TRUE AT1G31680.1 copper amine oxidase family protein similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31710.1); similar to copper amine oxidase [Pisum sativum] (GB:BAA77206.1); similar to copper amino oxidase; diamine oxidase [Glycine max] (GB:CAE47488.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.172147688857050 -1.98290432152872 0.0731902771625162 1 1.06892080870503 3.48913982990387 -0.172147688857050 0.0513921397070642
AT4G29380_at 6.44177005754371 6.35601037038468 6.47676436086314 6.62557657376929 7.09213211395043 6.70375280088676 6.19362465816795 5.64936590565609 6.22376677337634 5.935112063861 5.47402738051042 5.50759283779384 6.02846849232619 5.93948236234612 5.46978976914271 6.41174163092531 6.37033223962913 6.06998797087094 5.96840159773402 0.191716327081995 0.186269010865884 0.194641305008767 0.191622476804410 0.205616809003030 0.192792810043013 0.197452818274582 0.192878878494086 0.196804420454231 0.189528322893673 0.196658822921517 0.194377417772620 0.187756231031054 0.204579979898981 0.18778644799946 0.192797000822386 0.199707288674837 0.192054012340271 0.187900217956747 4 4|0 +|/ 14463693 14464607 14464284.25 14458828 14464865 + gene protein_coding_gene FALSE TRUE AT4G29380.1 protein kinase family protein / WD-40 repeat family protein similar to ATMPK17 (Arabidopsis thaliana MAP kinase 17), MAP kinase [Arabidopsis thaliana] (TAIR:AT2G01450.4); similar to protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19085.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain HEAT; (InterPro:IPR000357) 0.215432369107632 1.98216130119840 0.07328304011303 1 1.06785272051346 12.4180519287029 0.215432369107632 0.119464872476768
AT4G17660_at 3.39726021007697 3.43630384550464 3.58039562578462 3.1314747337078 2.84857043824391 3.27233644502728 2.12639935255625 2.30167544023390 2.45429994251128 2.18050879258359 2.00849739546655 2.10413740719948 1.97727808224475 2.42554744912461 2.25004949783383 2.33957086478572 2.21829213148901 2.52047085052306 1.98145381209864 0.237892705770514 0.251242375361383 0.252756568200023 0.247953383746064 0.257593393096187 0.246271859348247 0.242038910286876 0.230577730360501 0.236599393187031 0.241808643834254 0.234479033494763 0.242642137177655 0.239280700779944 0.242763684057744 0.236839409976767 0.234940970197807 0.234807410637623 0.244138450283243 0.240889247985895 4 4 + 9832441 9832935 9832654.364 9831372 9833019 + gene protein_coding_gene FALSE TRUE AT4G17660.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47070.1); similar to kinase domain containing protein [Brassica oleracea] (GB:ABD65075.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.208922104683419 1.98150575916090 0.0733649728232703 1 1.06691052104587 5.22975266584086 0.208922104683419 0.111261324852101
AT3G51090_at 1.30794251857608 1.45633834369214 1.39770718034443 1.29596178717639 1.37639540675923 1.32610096815245 1.20354354597484 1.37131498397679 0.791408247338572 1.15838028807291 1.39748237060344 1.45689373596992 1.26567833629406 1.02274562516168 1.30624611097249 1.17309925875546 1.57101172634932 1.57968945627427 1.11989796679637 0.201502787079730 0.206367814143816 0.200773643147724 0.208537721341361 0.203352223377768 0.201708372058001 0.202088046880788 0.202968848146666 0.209082832122092 0.201935254558188 0.205728828289130 0.212457958466804 0.200749006672979 0.208592503466033 0.208380859008482 0.204262944103279 0.206247142265374 0.212364915346534 0.200749006672979 3 3|0 -|/ 18989210 18990512 18990022.333 18988968 18990983 - gene protein_coding_gene FALSE TRUE AT3G51090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16460.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89621.1); contains InterPro domain Protein of unknown function DUF1640; (InterPro:IPR012439) 0.16881674051573 1.98125573415638 0.0733962446213172 1 1.06655119871738 2.52683042263998 0.16881674051573 0.0434536890373991
AT4G37270_at 8.47134560110863 8.58886675733405 8.4362029828138 8.53220732534892 8.32649230307652 7.8833956053356 8.45495777726893 8.5047646409659 8.9571701557769 8.30599694768839 8.57907086352266 8.4434416475114 8.0569800269116 8.5635750586887 8.19396467231818 8.54873204931546 7.75062068712602 8.62063681009358 8.26748158850515 0.144561739778241 0.142822251782954 0.150330906665204 0.147288295072111 0.139951353526624 0.151776464864976 0.145344762596788 0.144053615303328 0.148768414939509 0.145427009593399 0.139401232164102 0.145081657656509 0.142614776532824 0.144262024051561 0.145419678203984 0.14068055330121 0.161764065486705 0.149346945386726 0.144319069637463 4 4|0 -|/ 17542014 17542726 17542376.7 17540484 17546478 - gene protein_coding_gene FALSE TRUE AT4G37270.1 HMA1 (Heavy metal ATPase 1); copper-exporting ATPase Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions. Identical to Putative cadmium/zinc-transporting ATPase HMA1, chloroplast precursor (EC 3.6.3.3) (EC 3.6.3.5) (HMA1) [Arabidopsis Thaliana] (GB:Q9M3H5;GB:Q5JZZ1;GB:Q9SW66); similar to HMA2 (Heavy metal ATPase 2), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT4G30110.1); similar to putative cadmium-transporting ATPase [Glycine max] (GB:AAB81947.1); similar to Os06g0690700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058417.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; (InterPro:IPR006404); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.187998821873265 -1.98075777255599 0.0734585640536667 1 1.06583561199420 16.8272011029529 -0.187998821873265 0.0815091991615188
AT2G24180_at 9.58126968462632 9.77574963803005 9.66610065797494 9.85483205670728 9.40572276383868 8.97055013593283 8.74475891888993 8.9201526588601 9.0919534212732 8.96491385141069 8.28376778422673 8.21785526923607 8.44728599570961 8.51064768077663 7.9390461362211 8.57412939905456 8.52620706362888 8.45205307074978 8.8820729396844 0.128852201156321 0.127163007088938 0.129877026378764 0.129074673796101 0.130631374081595 0.139459524979148 0.127487603226277 0.126465769653310 0.136275322143511 0.132583971068932 0.127299896919803 0.129936653263308 0.133078248282432 0.129224571284013 0.135568895790297 0.124607728902763 0.140513413174924 0.136741065513641 0.122914880290347 2 2 + 10290205 10290645 10290438.364 10288927 10290815 + gene protein_coding_gene FALSE TRUE AT2G24180.1 CYP71B6 (CYTOCHROME P450 71B6); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B6 (EC 1.14.-.-) (CYP71B6) [Arabidopsis Thaliana] (GB:O65787); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.195977004496921 -1.97985304759151 0.0735719158487712 1 1.06453568626698 18.0391524580608 -0.195977004496921 0.093766276257804
AT4G17270_at 8.29900565369749 8.34641549699635 8.11376167052831 8.51831186097629 8.54778979688174 7.97153153699104 7.95654343224088 7.9872017288093 7.23363629323734 7.38542469957375 7.555938288405 7.89468881970064 7.50692966707757 7.91018105592205 7.62883182392245 7.64906884685858 7.75009190530802 7.27803032934408 7.43843781545643 0.175224388044917 0.176252641645214 0.186350917643867 0.169422022911421 0.169585993247851 0.170172691494208 0.176994553173385 0.172090037251157 0.198339326399952 0.171706319834428 0.173024087731776 0.170840589004807 0.165331031883444 0.175184260702809 0.170620307178598 0.172047568038958 0.170383828217742 0.182131237575916 0.181877354792542 4 4|0 +|/ 9677185 9678546 9677903.6 9676140 9678790 + gene protein_coding_gene FALSE TRUE AT4G17270.1 Mo25 family protein Identical to Putative MO25-like protein At4g17270 [Arabidopsis Thaliana] (GB:Q9M0M4;GB:O23570); similar to Mo25 family protein [Arabidopsis thaliana] (TAIR:AT5G47540.1); similar to MO25 protein -related [Brassica oleracea] (GB:ABD64974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.217388813859902 1.97963597670907 0.0735991366263393 1 1.06422383181793 15.7171799945517 0.217388813859902 0.122236150005214
AT1G79200_at 5.04614983555179 5.21485966965644 4.76465898602891 4.7307076013529 4.95335798859289 4.80126743149398 5.23175351452573 4.56698110755005 3.78068673429345 3.56933545356472 3.67131105857265 3.53524330439427 4.00986292028655 3.26203950054850 3.61765457717407 3.81726289688993 3.66256699140681 3.58280811998953 4.27896585051232 0.217326217142285 0.213180443014895 0.22070685893305 0.208448259977972 0.207934387663696 0.216316285322839 0.214939243344176 0.210680389629924 0.218056232314789 0.222006168520327 0.211928285227325 0.214189063220149 0.215252663028326 0.212873940891637 0.213530658509454 0.213754477648015 0.218376448753522 0.218670568331462 0.211991757160001 1 1|0 +|/ 29799299 29800565 29800157.1 29799280 29800933 + gene protein_coding_gene FALSE TRUE AT1G79200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53800.1); similar to Epstein-Barr virus EBNA-1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45376.1); similar to Os02g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046027.1); contains domain SUBFAMILY NOT NAMED (PTHR18460:SF12); contains domain ARMADILLO-LIKE HELICAL (PTHR18460) -0.216961852459766 -1.97959431752589 0.073604361779075 1 1.06416398387654 8.67430352548472 -0.216961852459766 0.121714106893890
AT1G14130_at 3.63230402777763 3.66093975980953 3.29161996401376 3.11988445164761 2.72272654912328 3.08555927690224 3.07370440454665 2.85684398089367 2.96294243022697 3.00738920264454 2.87755264080224 2.62498810262256 2.558815071209 3.16166881680362 3.04613064817167 2.80614964283084 2.95388135661721 2.74532601214405 2.935504473969 0.196641008496753 0.188503778237078 0.176774676558650 0.184579674559676 0.176774676558650 0.183954987524878 0.176774676558650 0.180874889584429 0.18104170312686 0.176794293671569 0.177625019180951 0.176774676558650 0.178758151128302 0.176774676558650 0.179489101719727 0.178879706074909 0.183828953871616 0.183487569894514 0.182192030715029 1 1 - 4836053 4836517 4836336.455 4835721 4837613 - gene protein_coding_gene FALSE TRUE AT1G14130.1 2-oxoglutarate-dependent dioxygenase, putative similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G14120.1); similar to 2-oxoacid-dependent dioxygenase [Prunus mume] (GB:BAE48659.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.186399241024254 -1.97951444480284 0.0736143808781107 1 1.06404923951247 6.08816083784612 -0.186399241024254 0.0791125074901256
AT3G54520_at 1.7921135958993 1.26540208401627 1.27018379793211 1.44682734804280 1.16589806748592 1.03542091308949 1.39605448768729 1.71864083053847 1.49176090757480 1.67493295836550 1.32052558254040 1.26087987667736 1.21736976061373 1.34350676131697 1.51167306524328 1.24242862423736 1.78309583653715 1.47902858149319 1.33940819139164 0.185556549718295 0.179987178260643 0.184096734771856 0.193053949859837 0.18517175221639 0.190156403315841 0.182741211577629 0.186710445531043 0.180205909812908 0.188523397056719 0.184101938588684 0.179111074650513 0.182494493026923 0.183291015417374 0.195370157986705 0.183168585215710 0.179111074650513 0.191500704012342 0.184814603470576 3 3 - 20194733 20195949 20195304.1 20194538 20196178 - gene protein_coding_gene FALSE TRUE AT3G54520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54530.1) -0.210345362962987 -1.9790367020996 0.0736743346715934 1 1.06336295963937 2.83474140568300 -0.210345362962987 0.113441813107076
AT2G27740_at 1.27614570959423 1.58823380687231 1.88475376958636 2.19877527781689 1.38611885686985 1.81067566249998 1.77947867078193 1.72470373713472 1.7022943583065 1.65584043624341 1.76906298751776 1.96396108537875 2.06208775836342 1.56944500399037 2.27056975217784 1.89619157342483 2.25711170288789 2.01900176700338 2.02289935175593 0.155217364386894 0.157308316486709 0.149818644709521 0.150414584315744 0.149063821786808 0.148902525959683 0.149854588206123 0.151454775205210 0.158343964402030 0.150620604259248 0.151435801182493 0.149717809224498 0.151639660517159 0.151409850424373 0.148135277870369 0.149204326361945 0.156135956968749 0.149796706907764 0.152241693345259 2 2|0 +|/ 11829906 11830592 11830120.2 11829809 11830809 + gene protein_coding_gene FALSE TRUE AT2G27740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36410.2); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033) 0.205095657835946 1.97891129145972 0.0736900804848952 1 1.06318281812731 3.59091418770035 0.205095657835946 0.106573753322657
AT2G43535_at 6.18208428866127 6.16787426190952 5.04615600203206 4.78764946431643 5.93365776120846 5.48454252676879 6.75835878886749 5.95042308128575 5.80218409262257 6.27523755390943 6.54742924449551 7.00477823989925 6.27627355804626 7.1276282063378 5.65465197913999 5.89256365956516 6.19058379611154 6.10461860732234 5.6516696428506 0.240993635933817 0.246416852288863 0.258498183372591 0.251469371838820 0.231496870413182 0.238722194354202 0.236537040714097 0.238812590463569 0.243739628777613 0.242600971325183 0.233920071091787 0.231496870413182 0.242362493418558 0.238022856565545 0.235430960581922 0.231496870413182 0.247673563215355 0.239424290595961 0.236904090876967 2 2|0 +|/ 18078214 18078586 18078436.3 18078050 18078753 + gene protein_coding_gene FALSE TRUE AT2G43535.1 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. similar to ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G43510.1); similar to Trypsin inhibitor 2 precursor (MTI-2) (GB:P26780); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.255782425847856 -1.97865729316241 0.0737219806130699 1 1.06281798627926 11.9185997757940 -0.255782425847856 0.166122756736283
AT1G27140_at 2.59394360902048 2.30097780462296 2.87018020260108 2.44790100074275 2.61277536187342 2.86376554975085 2.65274593731268 2.19183079539320 2.82827556565729 2.70465067343956 2.99823222750805 3.30037687927378 2.87260455406132 2.65207938388114 3.14278894805948 2.73333240872109 2.96957300460500 2.83676327677619 2.74604744375017 0.243037505277574 0.250992917853301 0.262932810495167 0.253326434423019 0.241228119843459 0.247393067868560 0.244148015141386 0.254648552706292 0.252767131064669 0.240805097165728 0.252817780515698 0.244013703933188 0.243059027945637 0.254781071430966 0.24974510723889 0.245414255062711 0.254361756275581 0.266266361749776 0.244686724975605 1 1|0 +|/ 9428022 9428587 9428313.1 9427845 9428703 + gene protein_coding_gene FALSE TRUE AT1G27140.1 ATGSTU14 (GLUTATHIONE S-TRANSFERASE 13); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU13 (GLUTATHIONE S-TRANSFERASE 12), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G27130.1); similar to glutathione S-transferase 1 [Papaver somniferum] (GB:AAF22517.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.221170966616557 1.97770067013084 0.0738422403218321 1 1.06144411213675 5.41570339748622 0.221170966616557 0.127120109985561
AT3G44140_at 6.32155768364341 6.6556716266451 6.27750478912962 6.56520087652669 6.27822144653825 6.51154873708952 6.67479484461275 6.96393744728836 7.64991609304244 7.6101186701004 7.3880072001579 7.24454286318007 7.35166480508725 7.79403596709294 7.2183135877689 7.56606637147743 7.34751697078965 7.77160784514772 7.58228846118677 0.251059820398565 0.228180374395243 0.231735468109276 0.242043823013144 0.22835001870447 0.233514359081311 0.215873546348596 0.240408597404980 0.216071095823980 0.219687191187298 0.222103659420167 0.219049449013152 0.215873546348596 0.223648032159643 0.215873546348596 0.216452198427256 0.224871493174153 0.218803702416661 0.220460263893563 3 3|0 -|/ 15896110 15896342 15896197.5 15896064 15896367 - gene protein_coding_gene FALSE TRUE AT3G44140.1 unknown protein -0.199879864165928 -1.97658445652437 0.0739827938074631 1 1.05984139184317 14.0682182778247 -0.199879864165928 0.0997801189427497
AT1G18890_at 7.51507633019106 7.90418058392036 7.98467400693325 8.21211407949055 7.51134555141656 7.25801156894988 6.15940640376467 6.38934920988421 7.28585839533823 6.44192444762182 6.46357681748072 6.95004496053394 6.16616121092057 6.65928374836433 6.43912753581756 6.03119023608279 5.49788478306557 6.24898102214899 6.25079870298688 0.187146321204450 0.186842891815522 0.203445384789985 0.201298617188587 0.186945430682198 0.195383403774821 0.181819337223795 0.188018866664862 0.187598404272248 0.193361657366383 0.187010135847332 0.186177927636619 0.185447767101755 0.181819337223795 0.192448525997450 0.187623739780638 0.193737157212667 0.189332849793248 0.189620255229927 1 0|1 /|- 6523471 6524214 6523879.8 6522755 6525953 - gene protein_coding_gene FALSE TRUE AT1G18890.1 ATCDPK1; calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. similar to CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12480.1); similar to CPK13 (calcium-dependent protein kinase 13), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G51850.1); similar to CPK30 (calcium-dependent protein kinase 30), calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G74740.1); similar to calcium-dependent protein kinase 4 [Capsicum annuum] (GB:AAX07129.1); similar to calcium-dependent calmodulin-independent protein kinase isoform 2 [Cicer arietinum] (GB:AAP72282.2); similar to calcium-dependent protein kinase 8 [Nicotiana plumba (GB:CAG27839.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.198518638538489 1.97621222454818 0.0740297206400083 1 1.05930700556418 13.8500489524609 0.198518638538489 0.0979224746210181
AT4G15440_at 3.70386192776346 3.36979367738965 3.81688256055655 3.31793422193977 2.21421038500550 2.28490329363124 3.27557367851823 3.21366210721889 2.22599793446711 2.97658830093725 2.57334571120174 3.14902075687084 2.83254712263696 1.95897036557458 2.53522323118167 4.28978334709962 2.79608917427550 3.12855834818844 3.29669308172017 0.218225627488881 0.221483721792108 0.212574896697503 0.214443861174599 0.216882021427397 0.222254877471515 0.211057892610198 0.218871625222990 0.221430301745735 0.214477676011708 0.213608031497201 0.226781160542058 0.219359724690545 0.216561384121934 0.215430269242062 0.217336660728377 0.224916804759789 0.218559650475989 0.216247605270910 4 4 + 8837991 8838413 8838197.182 8835494 8838675 + gene protein_coding_gene FALSE TRUE AT4G15440.1 HPL1 (HYDROPEROXIDE LYASE 1); heme binding / iron ion binding / monooxygenase Encodes a hydroperoxide lyase. Also a member of the CYP74B cytochrome p450 family. In the ecotype Columbia (Col) the gene contains a 10-nucleotide deletion in its first exon that causes it to code for a truncated protein that results in a non-functional hydroperoxide lyase. similar to AOS (ALLENE OXIDE SYNTHASE), hydro-lyase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT5G42650.1); similar to hydroperoxide lyase [Citrus jambhiri] (GB:BAC55161.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) -0.203695540509401 -1.97542485273285 0.0741290750798077 1 1.05817677298831 6.02012041292133 -0.203695540509401 0.105177034050906
AT1G32950_at 1.88279583903765 1.91723585701304 2.52020123689435 2.13806867545128 1.97057462132681 1.67238945949511 1.57677595149903 1.06935090608691 1.78209591266105 1.91095283686290 1.52975812419124 1.56637388870587 1.96257909093849 1.78792986220859 1.85508426825316 1.88816298303549 2.13013195847322 1.76339867681124 1.83114944308047 0.201413900278778 0.209818977386467 0.202681001553331 0.206951850047218 0.202515201158695 0.209608167272784 0.205717588687851 0.210747441011521 0.202598462764426 0.208532081542779 0.207652055539582 0.202222868675116 0.201477724030765 0.202269921129482 0.201830026544125 0.206198321204361 0.200510558903111 0.206548002449224 0.208513495638219 1 1 + 11944036 11944431 11944208.818 11941418 11944740 + gene protein_coding_gene FALSE TRUE AT1G32950.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10550.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32960.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.216398409462544 1.97541644640118 0.0741301365022459 1 1.05816470714652 3.66933744540651 0.216398409462544 0.121583184114471
AT2G03320_at 0.377084378693359 0.298761237067413 0.624591778692678 0.570005217635233 0.738337103441394 0.677056321188846 0.621140928467679 0.512527124257827 0.806583234142655 0.866500000836916 0.946485459672475 0.614638321577207 1.27154274687315 0.639899662566854 1.31435920116526 0.8081433668966 0.860161315089704 0.689154983868473 0.626372219592782 0.180894707709947 0.183827938824948 0.186459204978494 0.181321972145502 0.182042841807887 0.185113065916829 0.182337014606281 0.180894707709947 0.188102997060629 0.181652209532681 0.191266027353308 0.181016178748077 0.18263407887782 0.180894707709947 0.180894707709947 0.181886110612332 0.188962869345475 0.185683787232768 0.180894707709947 2 2|0 +|/ 1007411 1007915 1007783.3 1007379 1007942 + gene protein_coding_gene FALSE TRUE AT2G03320.1 unknown protein 0.163341084403783 1.97534042290455 0.0741397362249977 1 1.05805558948899 1.38220465304947 0.163341084403783 0.0271792252185967
AT3G06290_at 4.20021769997512 4.30858712862748 3.50733786941025 3.87572791898083 4.74762144135651 4.01034265983059 4.2728496328095 3.47347437839995 4.28726321219534 3.85779710271572 3.46896475448829 3.7242940185003 3.70175160962665 3.66871024194503 3.32673638434534 3.68482991017730 3.7469934002602 3.97175068559519 4.48022065092829 0.252684716743185 0.249962561927544 0.248785602363385 0.254921965676555 0.251150836781707 0.254505507251236 0.251819343796879 0.250995195003378 0.256688538787902 0.249178731566058 0.250580006803256 0.249119763322250 0.256621517852853 0.251922002555741 0.260932745562209 0.246291181902152 0.25645457357544 0.247516448091188 0.247567827058097 3 3 - 1899133 1899659 1899530.909 1899048 1907303 - gene protein_coding_gene FALSE TRUE AT3G06290.1 similar to SAC3/GANP family protein [Arabidopsis thaliana] (TAIR:AT3G54380.1); similar to Nuclear protein export factor (ISS) [Ostreococcus tauri] (GB:CAL50253.1); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) -0.287598925277148 -1.97483587197389 0.074203476805093 1 1.05733144488260 7.98461027328898 -0.287598925277148 0.199579072339519
AT1G26560_at 7.43070469787865 7.47209140287747 7.71095222898993 7.757358114462 8.02667020779235 8.21734504149444 9.92207416771084 9.54868486823279 9.04990422798415 9.46796606370145 9.88088749221667 9.74827553458132 9.29288395273853 9.28420628275994 9.83066898160646 9.58999161708152 9.24474008571522 9.72656344755116 9.30529210687113 0.184038567800272 0.175770582001189 0.174770781251944 0.169148801876413 0.173901041797259 0.178087708236847 0.171821573133243 0.164765232302661 0.173447968125144 0.161102647755869 0.167644931843541 0.162381284184285 0.174595456613968 0.172970327661311 0.164597807745943 0.160175077285981 0.170999949364283 0.167276852174176 0.171444305167178 1 1 + 9180860 9181683 9181320.909 9178365 9181822 + gene protein_coding_gene FALSE TRUE AT1G26560.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Medicago truncatula] (GB:ABE90952.1); similar to Putative beta-glucosidase [Oryza sativa] (GB:AAK92581.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.182458838947243 -1.97396406709257 0.0743137334390527 1 1.05608039175208 17.6853174114133 -0.182458838947243 0.0733479952326491
AT4G37320_at 2.95183873741303 3.12422766615681 4.05653088757921 3.95445963075887 3.17226871864189 3.5298002201164 3.59567071460446 3.80132637295606 1.78310246593331 3.19476263644894 2.34032976706143 2.43139745186075 2.47205635573549 2.68948460128236 2.19421044732168 3.22685008650327 3.16796794732449 2.16981864015614 2.59592777545951 0.227543301788932 0.227189315006899 0.224215963491021 0.233618263853913 0.230512789743774 0.234206405201479 0.232236830896356 0.24340255485824 0.241261609586868 0.224556662011319 0.236266866931650 0.230076068915763 0.232407882382695 0.232730058988955 0.242329740188131 0.229879273353999 0.233133158606786 0.230692300437379 0.231930536262349 4 4 - 17559748 17560309 17559943.545 17559574 17561721 - gene protein_coding_gene FALSE TRUE AT4G37320.1 CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5); oxygen binding member of CYP81D similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to cytochrome P450 family protein [Arabidopsis thaliana] (TAIR:AT3G28740.1); similar to CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37330.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.185957888849976 1.97327177397722 0.0744013960631384 1 1.05508710680548 6.07882138757982 0.185957888849976 0.0793525944210831
AT3G30840_at 2.03232059497623 1.64683187130785 2.28078016107379 2.00516468593122 2.23830293478668 1.81695734023934 1.50349685211312 1.75270155720442 1.91496960015578 1.96612989001377 1.82071705450848 2.05233456855768 2.53216531609151 2.19596640225958 2.08758319305377 1.9918193516908 2.11233603531857 2.21874233179503 2.27353086041400 0.270953621014269 0.272738348261221 0.270389356532072 0.268244672441865 0.273276754431682 0.286383060685632 0.268244672441865 0.268244672441865 0.274787354950725 0.268802582291117 0.268287027433232 0.272622553107493 0.270007211965923 0.268244672441865 0.268244672441865 0.269969974560917 0.278645847099512 0.268244672441865 0.294870969598609 3 3|0 -|/ 12590943 12591479 12591212.75 12590931 12591505 - gene protein_coding_gene FALSE TRUE AT3G30840.1 unknown protein 0.21318907153613 1.97291297489006 0.0744468674236522 1 1.05457236869687 3.99857024063106 0.21318907153613 0.117906060605056
AT2G34700_at 0.546794774120907 -0.0426376374020423 0.293925869821074 0.422265278110676 0.158394651301876 -0.294478867983084 -0.116778852833701 0.373475377409584 0.698757615275822 0.984540792437831 0.171680531452003 -0.0137563365397461 0.406848683187291 0.520924902257131 0.743259966354576 0.577212471757215 0.0756908631016174 0.410003012745205 0.738132837655962 0.22916100390902 0.230067879376503 0.226428170510278 0.226918869501414 0.227470969016439 0.229217789315521 0.226428170510278 0.226428170510278 0.228877669428218 0.230369721710671 0.226428170510278 0.227660501396659 0.228576166232892 0.228811804186104 0.227056305571732 0.228154790465614 0.234092238777084 0.227633860953016 0.2329234368949 2 2 - 14641417 14642630 14641991.636 14641213 14642706 - gene protein_coding_gene FALSE TRUE AT2G34700.1 pollen Ole e 1 allergen and extensin family protein similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G28290.2); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.245423709589089 -1.97280102015831 0.0744610609811994 1 1.05441176499336 0.751933454191136 -0.245423709589089 0.155686231858469
AT1G75050_at 1.64456812009314 1.34863568904761 1.66282197850749 1.59574639338534 1.75803685708408 1.63556374963268 1.47423774210353 1.25059623061405 1.13681610811667 1.41382026345996 1.59618919421184 1.32885547942793 1.23057242509077 1.40296037057993 1.28136108405360 1.5378900453967 1.59109285537481 1.41584828251756 1.3412055316101 0.213264263369877 0.209721639168659 0.212705055092672 0.219156755661689 0.225764356634684 0.210807275464701 0.203422547350596 0.205949278568086 0.215389389317005 0.208317116789889 0.203422547350596 0.204157269446446 0.217348619000364 0.203422547350596 0.211636076657476 0.213358747938594 0.209596814329036 0.203422547350596 0.203422547350596 1 1 + 28184262 28184683 28184488.182 28183777 28184723 + gene protein_coding_gene FALSE TRUE AT1G75050.1 similar to ATLP-3 (Arabidopsis thaumatin-like protein 3) [Arabidopsis thaliana] (TAIR:AT1G75030.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.179674190936943 1.97271271860267 0.0744722575810578 1 1.05428509546837 2.9064642707971 0.179674190936943 0.0685895617381586
AT1G19210_at 1.39849496352276 1.28749218401586 2.00339063869453 1.60367572232203 1.77379487336797 1.63724300635499 1.43352286404187 1.61468356142343 1.77207373804893 1.88916885062617 1.42335358527333 1.69146262873839 2.11485026511308 2.00709539744796 2.06006488883162 1.70997329577103 2.24057473873425 1.66101014321699 1.76781064230551 0.203185402726755 0.196467021529939 0.213161819639001 0.205587350140855 0.200913963629933 0.201312282917447 0.207782807061276 0.200276728024744 0.205191624228197 0.198516367706032 0.210502037364321 0.197975826349426 0.200907231429670 0.209513712907528 0.209367243602135 0.202640183012109 0.202316082595784 0.204125306856561 0.196734737518924 1 1 - 6626983 6627425 6627254 6626813 6627521 - gene protein_coding_gene FALSE TRUE AT1G19210.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G74930.1); similar to dehydration-responsive element binding protein 3 [Glycine max] (GB:ABB36646.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.187420687248929 1.97259950374936 0.0744866154715908 1 1.05412269105751 3.43065349082678 0.187420687248929 0.0818237957574537
AT3G12390_at 10.4983057393567 10.4969786853754 10.1310149055837 10.0769963090610 10.3346029536317 10.2300554216104 10.4933204107917 10.5860136480980 10.1268449177771 10.1753378656410 10.2790120996181 10.3441007102680 10.1990092835683 10.1048252363305 10.376802747437 9.9935225660042 9.9117691190051 10.1649793196285 10.2135216782198 0.0600760753422981 0.0590359605406034 0.0604779709180549 0.0613491940388469 0.0602266856273256 0.0615858650373469 0.0607479597844007 0.0627979177534176 0.0725625205026945 0.0612985894635634 0.0625776127999519 0.0590359605406034 0.0598218661603468 0.064080295509012 0.0601164366169174 0.061878651679866 0.0625417958367458 0.0610752553996328 0.0593595264188719 3 0|3 /|+ 3943079 3943567 3943377.556 3942264 3943816 + gene protein_coding_gene FALSE TRUE AT3G12390.1 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative Identical to Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) [Arabidopsis Thaliana] (GB:Q9LHG9); similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49470.1); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABD32881.1); similar to Os01g0938900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045343.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.162818037706956 -1.97255067059378 0.0744928092811217 1 1.0540526421024 20.5277380704111 -0.162818037706956 0.0259247164366405
AT4G07990_at 4.38993250788308 4.42840720823828 4.25418210728274 4.11537187725892 4.51897139611447 3.90880694082223 4.81322947218899 4.15435936285539 3.69599204776099 3.67813201024875 3.71623986322869 3.43324430728444 3.01863568765978 3.62623384753952 3.08621442854881 3.25484925870931 3.17671338290725 2.94341790859159 3.21169610790695 0.213892170440604 0.220230508155330 0.214886078599489 0.223183566266658 0.213519918275725 0.226671074209061 0.223303478760371 0.215932588256823 0.221362106383304 0.215323834371925 0.213352573804188 0.218092322611956 0.225828590374883 0.21733795938174 0.224030446943586 0.214275015356548 0.216888882758231 0.218983990791344 0.219135725984382 4 4|0 -|/ 4825829 4828816 4826776.333 4825406 4829605 - gene protein_coding_gene FALSE TRUE AT4G07990.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G03160.1); similar to Os07g0124800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058807.1); similar to chaperone protein DNAJ, putative [Leishmania major] (GB:CAJ09602.1); similar to Os03g0728100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051145.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.246906096917702 -1.97226008874469 0.0745296754893987 1 1.05363583073057 7.72818276284597 -0.246906096917702 0.157390249948040
AT4G19910_at 1.29536729862808 1.50923690171841 1.44433751154274 1.13941159359396 1.05592903484321 0.994563711566073 1.28625090748804 1.66769825204813 1.06152003501441 1.39348977837931 1.04349517834960 1.20372897288106 1.09626824869714 1.11698306498497 0.704697840093242 0.963669525358053 1.37448883054634 1.75861374323184 1.34258210029003 0.215597832498874 0.216244695356374 0.226862361893777 0.233612444152808 0.215597832498874 0.216632644835471 0.217561644586083 0.218510709749422 0.229046508218811 0.216390220884325 0.217859641423129 0.215597832498874 0.217215713667529 0.217047195278316 0.218714128448803 0.215899159824286 0.217099782129338 0.227703152703003 0.215597832498874 4 4|0 -|/ 10795888 10796487 10796241.444 10795879 10796697 - gene protein_coding_gene FALSE TRUE AT4G19910.1 Toll-Interleukin-Resistance (TIR) domain-containing protein similar to disease resistance protein (TIR class), putative [Arabidopsis thaliana] (TAIR:AT4G19920.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE94488.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -0.194599336397152 -1.97214096554448 0.0745447935985522 1 1.05346496760116 2.51090297480143 -0.194599336397152 0.0928689113717749
AT2G44090_at 7.33338124230278 7.18992859121627 6.89168716584586 6.88270855544746 6.87821166488972 6.88761956658383 7.43608266128909 7.3242258908971 6.64900675995336 7.0554813096621 7.04210389732787 7.2372515258114 6.74345474255347 6.8702141105111 6.9155124974026 7.22683505926485 7.19033893811874 7.15907192087327 7.1171201240943 0.162158172435949 0.166419751034997 0.18753972602907 0.169000756196654 0.170217016835483 0.179072234345902 0.169858513425408 0.178235233145819 0.180809787537181 0.165972263217771 0.166912602338565 0.169961723057384 0.176305372592418 0.173591264076126 0.168764096831507 0.175178749026476 0.176769329447635 0.163226485411586 0.174567419399727 2 2 - 18245790 18246324 18246103.182 18245436 18248392 - gene protein_coding_gene FALSE TRUE AT2G44090.1|AT2G44090.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59910.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96769.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA92347.2); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84657.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.1641430431608 -1.97144743671670 0.0746328671660033 1 1.05247029839786 14.0972976178354 -0.1641430431608 0.0315604095355715
AT1G27310_at 9.2803842884996 9.25616408116693 9.11614290940058 9.20094093658922 9.3947954441756 9.32872931334598 8.68285637562086 9.06775239516637 8.76438431003416 8.55110967333085 8.85938795695354 8.88480790383076 8.90344289214238 8.8564937254192 9.0977289345002 8.64620254685098 8.4393825725376 8.65438565468684 8.5483924520256 0.141308326176519 0.137231023946275 0.134687300626816 0.142497836830234 0.141880535047229 0.137357296019082 0.128404285638691 0.137645160878974 0.140620976559829 0.139724475078067 0.131362600425710 0.129668740617849 0.132193679946526 0.139577443292762 0.131238857750312 0.135746591582250 0.146888371432852 0.146638373285993 0.133400613269221 1 1 - 9484626 9485747 9485554.091 9484303 9485883 - gene protein_coding_gene FALSE TRUE AT1G27310.1 NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. similar to NTF2B (NUCLEAR TRANSPORT FACTOR 2B), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27970.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to hypothetical protein SPAC1B9.01c [Schizosaccharomyces pombe 972h-] (GB:NP_593753.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) 0.179898205333030 1.97099584399922 0.074690268553856 1 1.05182269709813 17.87298296891 0.179898205333030 0.0692839217962417
AT3G14650_at 8.99929095247604 9.34163545784704 9.20889119620366 9.35565203357063 9.792641365203 9.54936945457665 9.91606136355224 9.99614417825471 9.21042203146586 9.56458651447804 8.83239726572554 8.94755500463078 9.43332905658387 8.85161928032997 8.72912698526214 9.59611821006714 9.31744023784911 9.15348561204021 9.3981950903115 0.124549466724499 0.129263957961552 0.133046863289046 0.133170217141939 0.129921272200564 0.128214995020420 0.128803040121936 0.130672932425455 0.131070577715145 0.127796968195925 0.129772724483955 0.124549466724499 0.128317674715204 0.136982734448298 0.134149647802155 0.124695424888659 0.138239329571854 0.127085747474547 0.132532434964324 3 3 + 4923550 4924056 4923823.273 4922138 4924699 + gene protein_coding_gene FALSE TRUE AT3G14650.1 CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.185039198917363 -1.97077597770067 0.0747182303690896 1 1.05150742311785 18.7693116678669 -0.185039198917363 0.0782262562104108
AT4G11220_at 9.05123520556659 9.04965472563744 8.91012614994668 8.99069925014113 9.32645653463788 8.79250241557181 8.88174864202628 8.67948020586696 8.1868432722184 7.99086667010061 8.1663147856524 8.46259982403479 8.54832983221669 8.34624935347967 8.36913105723148 8.27245450177747 8.43625469257019 8.41303932105252 8.025202541352 0.123207338125045 0.117514547780712 0.122745157709627 0.127294654909532 0.125393115492643 0.126110612368494 0.120306425232697 0.118649132979782 0.123385819070193 0.119950737842348 0.120047151255119 0.119787613837130 0.117246156408159 0.126942815755309 0.120559689647874 0.117837609367041 0.128628176259607 0.120960528704402 0.118663561098786 4 0|4 /|- 6838448 6838925 6838691 6837907 6839791 - gene protein_coding_gene FALSE TRUE AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2) similar to BTI1 (VIRB2-INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT4G23630.1); similar to Os01g0736900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044177.1); similar to putative 24 kDa seed maturation protein-like protein [Solanum tuberosum] (GB:ABC01908.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.199287784622476 1.97065753399508 0.0747332976603172 1 1.05133758871632 17.1824549739538 0.199287784622476 0.0997902945079505
AT2G35730_at 0.591934695809619 0.410618911945123 0.838371915945312 0.722348547527023 0.645508686131006 0.860013466102238 0.4732021297803 0.427485443607328 0.627089182974165 0.450072666794876 0.56277417780803 0.605094839019613 0.87396672377279 0.365530944937836 0.556782509430789 0.522158560002443 0.418987333768328 0.57948189264708 0.446046992976986 0.201448558243876 0.201448558243876 0.21326207860756 0.202027443426668 0.206740582134681 0.205840838916640 0.201792123761474 0.213012010516040 0.206028877449747 0.208163263116696 0.207144732191488 0.203930535217713 0.201448558243876 0.203099788274217 0.209057024353918 0.206594873509578 0.213470302998007 0.205195783687822 0.202231046822752 2 2|0 -|/ 15027644 15028496 15027844.4 15027571 15028635 - gene protein_coding_gene FALSE TRUE AT2G35730.1 heavy-metal-associated domain-containing protein similar to Os01g0927300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045267.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88197.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.171805600199412 1.96999547558935 0.0748175706253722 1 1.05038835414607 1.15535217640035 0.171805600199412 0.0531813486089958
AT1G75960_at 4.44464078403909 4.31273042378358 2.52882856696709 3.08294804684531 3.83089185484441 3.92889845110996 2.78423622377349 2.51381029436408 5.00664045914461 3.69087518906468 5.46453068474883 5.22301194939048 4.55669814282805 5.10039754432093 4.75548631886327 5.1795604646874 3.39830682531722 4.01889781251202 3.6835847161026 0.233506701258763 0.229001438697598 0.233297438849613 0.240327505750085 0.228697131533354 0.221634982668967 0.229870204759999 0.228304068938828 0.221634982668967 0.230516426564450 0.224470713853314 0.234080329522183 0.221634982668967 0.228619254637271 0.224016775261679 0.221735004597655 0.229471827576718 0.221634982668967 0.221634982668967 1 1 + 28522890 28523414 28523182 28521694 28523535 + gene protein_coding_gene FALSE TRUE AT1G75960.1 AMP-binding protein, putative similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G16370.1); similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G16340.1); similar to catalytic [Arabidopsis thaliana] (TAIR:AT1G21530.2); similar to amp-binding protein [Brassica napus] (GB:CAA64328.1); similar to H0103C06.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86098.1); similar to Os04g0674700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054242.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.207057530757267 1.96984821687233 0.0748363271175353 1 1.05017723848361 7.84794541701795 0.207057530757267 0.110427890537822
AT3G15140_at 2.09717595519045 1.99682200943403 1.75567616972599 1.76421295944913 1.60587200617368 1.96621561324066 2.00010260470839 1.92690321244273 2.28343290844089 1.89510929125048 2.15159754901729 2.09189761349309 0.91237864332472 1.40733426650213 2.01332765366875 1.67377854640728 1.96294953865043 1.90866174278794 1.48835398892767 0.192450972048718 0.189286663016009 0.186251857174837 0.188932287334695 0.189538016158764 0.195890416220912 0.186251857174837 0.187295695450393 0.190083329148544 0.19270218727987 0.194062949026139 0.195672082118009 0.196412440842934 0.190929274895435 0.190067404583766 0.189784641670771 0.200487279618916 0.193216041057177 0.187552558078423 3 3|0 -|/ 5099779 5100990 5100212.875 5099539 5101788 - gene protein_coding_gene FALSE TRUE AT3G15140.1 exonuclease family protein similar to Os06g0353400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057590.1); similar to SJCHGC03520 protein [Schistosoma japonicum] (GB:AAW27567.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) -0.177990730135711 -1.96963452211079 0.0748635534256113 1 1.04987088949539 3.71622561151453 -0.177990730135711 0.0659766128067657
AT4G16340_at 3.8501296228605 4.10965815113966 2.62407241021273 2.79214246991637 3.04810566466873 3.49068921165809 3.5646141611114 4.43250032476162 4.59752539782935 4.37825115665622 5.27136380802465 5.9179316332433 4.24997681393320 5.2054809674992 5.91305315678085 4.78454338114776 4.0450927241627 5.35507390289881 4.88973768071742 0.25316601917431 0.245794261838863 0.250669827031227 0.244785123859393 0.241607129961203 0.254190940570534 0.237067276321769 0.243131974221813 0.244031132662138 0.237109307244070 0.237067276321769 0.240274037921784 0.238026522057537 0.253291683342335 0.245616622743241 0.239435662387442 0.250054491251683 0.240501130466887 0.244167443350504 4 4 - 9228790 9229310 9229071.5 9228202 9241334 - gene protein_coding_gene FALSE TRUE AT4G16340.1 SPK1 (SPIKE1); GTP binding / GTPase binding / guanyl-nucleotide exchange factor mutant has Seedling lethal; Cotyledon, leaf-shape, trichome defects; Putative Cytoskeletal Protein similar to Guanine nucleotide exchange factor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95731.1); similar to Putative adapter protein SPIKE1 [Oryza sativa (japonica cultivar-group)] (GB:AAN65000.1); similar to Dedicator of cytokinesis [Medicago truncatula] (GB:ABE92047.1); contains InterPro domain Dedicator of cytokinesis; (InterPro:IPR010703) -0.264748327897002 -1.96963190945558 0.0748638863544717 1 1.04986714412680 8.34631531547229 -0.264748327897002 0.176880931124261
AT3G43610_at 5.06502938178051 5.45420485114413 4.24626144928002 3.79506223397532 5.19032846837246 5.36071078854515 5.54265353836754 5.22385901426428 5.63085900301909 5.05651833643450 5.54299160534603 6.01025224222257 4.99448857288023 5.58735950143592 6.09508537653377 5.18811578580055 4.90167597236507 5.30231866401486 4.94051824178219 0.208694858498927 0.202669358113483 0.210183917015856 0.211131159318864 0.208444318183186 0.223164682143404 0.220303877647781 0.2053121281048 0.206882771518339 0.202650002176429 0.204003918290730 0.202308487905370 0.210485677094618 0.203958635772742 0.205046541092785 0.202308487905370 0.209656057859638 0.202308487905370 0.216123063016521 3 3|0 -|/ 15528770 15530542 15529503.75 15528760 15534915 - gene protein_coding_gene FALSE TRUE AT3G43610.1 tubulin family protein similar to SPC98 (SPINDLE POLE BODY COMPONENT 98) [Arabidopsis thaliana] (TAIR:AT5G06680.1); similar to OSJNBa0005N02.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD41288.2); similar to tubulin family protein, related [Solanum demissum] (GB:AAK91898.2); contains InterPro domain Spc97/Spc98; (InterPro:IPR007259) -0.214929261674798 -1.96916081022338 0.0749239407538562 1 1.04919183485658 10.3158059617929 -0.214929261674798 0.120605364949031
AT3G22250_at 3.04973395244493 2.93597874009743 3.35119271846596 3.16377452852439 2.72248468061911 3.04932700535384 2.64154556552993 3.18691008416198 3.04784581581305 3.08918921102303 3.43075669760574 3.38617692539441 3.41029418029191 3.28771627945034 3.59496362604427 3.08978546858457 3.79205469872801 3.33940807336496 3.19715447858875 0.209114016506877 0.204779023737285 0.205353127220738 0.215129668501728 0.205512499402315 0.218963029195011 0.207077963263508 0.204650510900625 0.202089000085568 0.207632467100634 0.211411440679788 0.205453991712556 0.202089000085568 0.204579039512192 0.216644444708552 0.207524522305623 0.206987648061106 0.214203769259832 0.208260649180672 3 3|0 +|/ 7869355 7869828 7869543.8 7867760 7870236 + gene protein_coding_gene FALSE TRUE AT3G22250.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to putative indole-3-acetate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD25308.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.211575319778504 1.96904342101397 0.0749389121802282 1 1.04902357094969 6.27651390714535 0.211575319778504 0.116386715992961
AFFX-Athal-GAPDH_3_s_at 11.4701305001326 11.6531324975917 11.8687937130421 11.6526522219928 11.5155296767346 10.9827843011892 11.5493815769480 11.5689658853008 11.7256431252533 11.5192042957983 12.2389223216306 12.3950102980137 11.9429046098122 12.1357213540445 12.1963264486701 11.9665846910013 11.4435875443446 11.786973325843 11.4134573984320 0.0829991587583049 0.0839886630455154 0.0803951019191842 0.0828104507111347 0.0802183427143874 0.0964208087764136 0.0797565430933506 0.0817225818586416 0.085807660370552 0.0797565430933506 0.0814607970618136 0.0797565430933506 0.082341583020685 0.0837274377329239 0.0822696129479391 0.0801619489131075 0.0803800144645772 0.0842971621965151 0.0801208255052357 NA NA NA NA NA FALSE FALSE 0.202511457127584 1.96901807538515 0.0749421450425006 1 1.04898724146955 23.3156823452821 0.202511457127584 0.104466559623373
AT2G25565_at 1.45316589693564 1.69888062791114 1.87037711490074 1.64911502850789 1.43410448930167 1.19461253606348 1.62811056858828 1.34944673814489 1.98086867542381 2.01889715997956 1.51253319584665 1.44722338145557 1.71151129596883 1.27909577653695 1.60355089958922 1.43367988945106 1.90797233768034 2.27615223130152 2.09013083508988 0.206806247301843 0.202231391692635 0.204156047698640 0.208823042697881 0.206053714675014 0.207083792270603 0.213948815546412 0.210956222155408 0.217988039510598 0.214707156172031 0.216989843694829 0.207760267264578 0.205759576159593 0.210436864520745 0.206731349168504 0.202786524015233 0.212218462349789 0.20818329902937 0.203830205781751 2 2|0 -|/ 10891165 10892300 10892035.4 10891140 10892373 - gene protein_coding_gene FALSE TRUE AT2G25565.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G24480.1); contains domain RING/U-box (SSF57850) -0.189424673276926 -1.96889568033753 0.0749577584909254 1 1.04881180776052 3.37294184144914 -0.189424673276926 0.0855426841020603
AT4G18040_at 8.5459651376164 8.5147228865261 8.67640061278188 8.58221843222485 8.69138180415046 8.42207449791 9.00779234817697 8.93764340895673 7.75172798562387 7.51506916452269 8.1720086399467 8.28520035896784 7.65485427274426 8.20494832350141 8.59177500770328 7.80932331797593 7.56347356350602 8.21851303180556 7.4202954519529 0.172821020558706 0.170503182172825 0.172102614737114 0.176964075737787 0.169242252797057 0.184526710683413 0.178989296401793 0.176363782246836 0.175770758505321 0.176886355522339 0.170252448865887 0.168515141022423 0.174748155631512 0.168890723540729 0.174879606597626 0.174788277859526 0.175082929097603 0.170927878568034 0.183638013315457 4 4|0 -|/ 10016736 10017984 10017479.4 10016579 10018240 - gene protein_coding_gene FALSE TRUE AT4G18040.1 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / translation initiation factor eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein. Identical to Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit) (EIF4E1) [Arabidopsis Thaliana] (GB:O23252); similar to eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G29550.1); similar to eukaryotic translation initiation factor 4E; eIF4E [Pisum sativum] (GB:AAR04332.2); contains InterPro domain Eukaryotic translation initiation factor 4E (eIF-4E); (InterPro:IPR001040) 0.170817877633403 1.96887821235152 0.0749599870593049 1 1.04878677057599 16.4847130236523 0.170817877633403 0.0511298666424173
AT2G44745_at 1.93570909628200 1.48612434274296 2.18463193473863 2.08349134133630 1.86938157882761 2.02489444416367 1.48051415601989 1.93379204633696 1.59029639935980 1.90331297586378 2.15286307308126 1.77240392165755 2.36619043743898 2.03284917917076 1.72609794929721 1.89795762490841 2.36992843062773 1.48015552096881 2.16253082709605 0.219116489882129 0.219543155422874 0.223146629240625 0.222912235774429 0.225939081214246 0.220985384674298 0.218211512016541 0.23422141347939 0.231182139960262 0.218211512016541 0.221507534077847 0.230066044373242 0.220632414728612 0.231116026455654 0.226753771314569 0.218211512016541 0.228703849438754 0.226347514569229 0.223251811220622 2 2|0 -|/ 18454569 18455973 18455246.75 18454348 18456084 - gene protein_coding_gene FALSE TRUE AT2G44745.1 WRKY family transcription factor Identical to Probable WRKY transcription factor 12 (WRKY DNA-binding protein 12) (WRKY12) [Arabidopsis Thaliana] (GB:Q93WY4;GB:Q8S8S5); similar to WRKY13 (WRKY DNA-binding protein 13), transcription factor [Arabidopsis thaliana] (TAIR:AT4G39410.1); similar to WRKY-like DNA-binding protein [Oryza sativa] (GB:CAC39034.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.210495307062531 1.96869613075256 0.0749832207323402 1 1.04852579529521 3.80491028484786 0.210495307062531 0.115052197448800
AT3G56110_at 6.73166551265597 7.24282235112354 6.48304927848648 6.78546824686766 6.97951856887145 6.68088344557208 6.23096793037268 6.72636166026247 5.72313296619701 5.25168959413082 5.5789416242709 5.65339534302555 5.78949951549543 5.82602157687794 5.93086832519770 5.78465545306106 5.61317578936354 5.45075141718071 4.72937915691975 0.256494842411528 0.262529179820611 0.257465441017038 0.260196068619423 0.256494842411528 0.274339737613173 0.258479116830329 0.2696113466045 0.275888445325383 0.27296722931285 0.260728533159737 0.262664093543546 0.26577998034209 0.277021191501744 0.266340601274246 0.256494842411528 0.257835529976747 0.266988123228135 0.269906362984451 3 3 - 20833253 20833711 20833475 20832913 20833987 - gene protein_coding_gene FALSE TRUE AT3G56110.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT2G40380.1); similar to Os05g0474400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055824.1); similar to prenylated Rab acceptor protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAV65110.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.233977623077832 1.96814062637264 0.0750541447248829 1 1.04772966111945 12.2016658924307 0.233977623077832 0.143472276557226
AT1G64630_at 6.0088251481464 5.72632731457332 5.43636279466296 5.6577796180233 6.62550181659518 5.92565801742039 5.82212624199627 5.37075211902751 4.42260064102105 4.44596262077916 4.30658026542899 4.91728486561346 4.99375856774938 4.94871516068117 4.5104328126775 4.82183334097103 5.05360824941459 5.09349411059782 4.68592017315583 0.251285547866194 0.23810529595306 0.240922289603539 0.244860050119921 0.241451267472147 0.239694325865849 0.243919883598150 0.23810529595306 0.251658493669375 0.243156053508235 0.239470601528749 0.239971875120077 0.23810529595306 0.241570703452320 0.245226123812917 0.238389840287454 0.247290259032999 0.239974738362517 0.242499270162822 1 1|0 +|/ 24025088 24025696 24025460.8 24023153 24025957 + gene protein_coding_gene FALSE TRUE AT1G64630.1 protein kinase family protein similar to WNK8 (Arabidopsis WNK kinase 8), kinase [Arabidopsis thaliana] (TAIR:AT5G41990.1); similar to ZIK1 protein [Medicago sativa] (GB:CAC84087.1); similar to Os02g0672800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047709.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.245935066197986 1.96782995399231 0.0750938370387466 1 1.04728445528591 10.4961039171192 0.245935066197986 0.156932089083935
AT3G16170_at 4.52222407041243 5.03288021767303 4.48222828976991 4.84609842854132 4.0002630627387 4.30977004001302 4.25007174750882 4.67840765017548 4.8118418681496 4.61421351286675 4.48470375597942 4.46423894872314 4.31162332764489 4.62827480396371 4.45005056955574 4.45403255363203 4.34446792377915 4.70554365330626 4.77655871792507 0.206541243020058 0.202248730329940 0.209088630177549 0.22012030616788 0.206365204992093 0.216908371462747 0.205124599865793 0.203772575667595 0.211107777620182 0.214062179488416 0.205497094945185 0.206573910256109 0.204070427138242 0.203845080495460 0.205758463110822 0.205336050158365 0.212553426850515 0.214300168277563 0.202614967166982 3 3|0 +|/ 5478968 5479938 5479506.333 5476080 5480308 + gene protein_coding_gene FALSE TRUE AT3G16170.1 acyl-activating enzyme 13 (AAE13) similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT3G48990.1); similar to putative acyl-activating enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAD87349.1); similar to Os01g0761300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044322.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.232571861875400 -1.96776790912286 0.0751017663945045 1 1.04719554610546 9.12252875921418 -0.232571861875400 0.14190877003444
AT1G55590_at 6.84269920330627 6.14187377587608 6.68602189934681 6.57368297035171 7.19128742847523 6.95335615740035 6.40167321154483 5.68780939015129 5.97999568308063 5.58454476859150 5.7952280477136 5.87711934973146 5.80318134110043 5.77328748594892 5.29550280699141 5.95058673259509 6.1975155101932 5.92177734130982 6.06519487044409 0.247943697216817 0.243592142920926 0.248594593974244 0.255440481020806 0.245343903210418 0.248987028954717 0.242840819937464 0.250859294497311 0.24340317751882 0.247692813634749 0.265250827589694 0.247400040437112 0.24834500912698 0.254460126963754 0.252091049851596 0.247595112490376 0.245986642410137 0.250053263277173 0.252950886838614 1 1 - 20773194 20773659 20773421.455 20772986 20775537 - gene protein_coding_gene FALSE TRUE AT1G55590.1 F-box family protein similar to F-box family protein (FBL10) [Arabidopsis thaliana] (TAIR:AT2G17020.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36388.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.266384802458244 1.96671694308304 0.0752361987256924 1 1.04568971171893 12.4114771383833 0.266384802458244 0.179008229409797
AT3G63410_at 11.2950947524610 11.3662214487887 11.1067431417953 11.0853295294348 11.0973804797396 11.1196773633938 11.9889152695509 11.9151829821144 12.0802116717234 11.9711764256969 12.1732221391863 12.3582281746234 12.0642302737922 12.1309313721071 12.2281785204324 12.3265926139891 12.0130473580515 12.2899658885933 11.8908731520331 0.0619150753604823 0.0609021718242603 0.0613782189455031 0.0627603068112631 0.0613540203901619 0.061949024200533 0.0611537007296518 0.0622143874694963 0.0628913347675446 0.0626528479649183 0.0626505274535631 0.0615588395554829 0.0623083979712766 0.0606791322896925 0.0636869164178452 0.0600133664958146 0.0649886376811652 0.0642422515799511 0.0633095574713147 3 3|0 -|/ 23426798 23427461 23427125.556 23426564 23428094 - gene protein_coding_gene FALSE TRUE AT3G63410.1 APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis. similar to MPBQ/MSBQ methyltransferase 1 [Helianthus annuus] (GB:ABB52806.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.160887595929407 -1.96670550703064 0.0752376627782084 1 1.04567332791272 23.4612197671172 -0.160887595929407 0.0185185883525569
AT1G66330_at 10.1092945527608 10.0787794958827 10.6363760315468 10.5810278240982 10.5889912636876 10.3403061165603 11.1434571183522 10.8874812832538 10.5155198823224 10.6344715322014 10.1352372237108 9.88639463887798 10.3211678891603 10.3237889792253 9.88234453873515 10.5604388727056 10.5921845028324 10.1646150846038 10.5513037933517 0.0797422379915564 0.07748464443493 0.0785580522327062 0.0783671588084214 0.0783111861416693 0.079440803300583 0.0787990735534224 0.0851755514369184 0.0833421114045506 0.0840856402216565 0.0794861359110694 0.0797467940982559 0.0806360221980352 0.0826837335134958 0.0856131460826984 0.0798894763598352 0.08347029201006 0.0793675393220026 0.0819386336471521 1 1 - 24733657 24734409 24734075.182 24733292 24736154 - gene protein_coding_gene FALSE TRUE AT1G66330.1|AT1G66330.2 senescence-associated family protein similar to NTA15 protein [Nicotiana tabacum] (GB:AAP41026.1); contains domain ARM repeat (SSF48371) -0.175952369991468 -1.96569905555675 0.075366613433453 1 1.04423159874588 20.9458991451961 -0.175952369991468 0.0627218773755554
AT3G60350_at 5.17918205998809 5.29015419367109 5.21193513140603 5.23327208739483 5.34206136079406 5.55553419889698 5.33269972481112 5.13798598671218 4.36044754529608 4.591616216862 4.96663300263872 4.92285720814632 4.84731198299566 4.56388918878913 4.57091558746157 4.71205283647359 4.83957842080658 4.27941576074093 4.45972582500956 0.187500868956864 0.192795561300551 0.194644414854654 0.19310820842079 0.190331749556852 0.194403279321729 0.187897657154771 0.186546465111615 0.201103902336027 0.193550808792548 0.192363954851569 0.190181794097995 0.188416113839047 0.192168680721516 0.190990610212332 0.186448456334274 0.189224030548751 0.201658399555413 0.195998723992236 3 3|0 -|/ 22317864 22318487 22318073.1 22317463 22322161 - gene protein_coding_gene FALSE TRUE AT3G60350.1 armadillo/beta-catenin repeat family protein / F-box family protein ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings. similar to armadillo/beta-catenin repeat family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44900.1); similar to Os10g0563200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065399.1); similar to putative arm repeat protein [Oryza sativa] (GB:AAG60190.1); similar to armadillo/beta-catenin repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47988.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.171465211389018 1.96351486997962 0.0756471682301254 1 1.04110386171965 9.87706723174052 0.171465211389018 0.0536899612456753
AT3G45410_at 2.21465844847649 2.21350975106725 2.18979995222968 2.10200375850640 1.93797425455280 2.11344659655575 2.14997861490641 1.92090035338065 2.44957775713754 2.3281451590598 1.53315447471944 1.58360822577167 1.60276718204438 1.74756714798171 1.93989985437048 1.90034609559374 2.67997783848524 2.47892586611188 1.92993447992786 0.201559277959129 0.20760108110149 0.200679943433034 0.200926352959579 0.200426177579629 0.200426177579629 0.204508464484948 0.209083957400298 0.202715648327452 0.206375751356332 0.206065514832006 0.201994580912342 0.20812439556269 0.201863846368273 0.208889559093158 0.206607443785283 0.20315027866751 0.205994104861042 0.204445221366461 3 3 - 16665015 16665570 16665303.273 16664884 16666998 - gene protein_coding_gene FALSE TRUE AT3G45410.1 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G60320.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G45420.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G45440.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.170780307285063 -1.96316442900440 0.075692272146877 1 1.04060217099134 4.18986728338104 -0.170780307285063 0.0521973958749259
AT1G49620_at 1.63485905554623 1.69508123860106 1.76944240644640 1.22961246314097 1.70275508251582 1.47199853627544 2.16621430032803 1.48290378516202 2.04190129361761 2.58697337628061 2.45737740455714 2.25116406652550 1.81512346274639 1.56745465056997 2.48365624805311 2.30755505322832 1.90097613997794 2.29541609409292 2.63994647753855 0.200443973316160 0.192110769029383 0.192126478099443 0.199295115867989 0.193008352848389 0.192209106434427 0.192110769029383 0.197809776063447 0.200224296009869 0.197088298867442 0.197801017852719 0.195098033908031 0.195299723225889 0.202265106198822 0.195548196802396 0.196205896841064 0.203351852313292 0.195742219650205 0.201797241680714 1 1 - 18369380 18370130 18369820.364 18369360 18370227 - gene protein_coding_gene FALSE TRUE AT1G49620.1 ICK5 (KIP-RELATED PROTEIN 7) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Binds to D type cyclins and may inhibit cell cycle. similar to ICK4 (KIP-RELATED PROTEIN 6) [Arabidopsis thaliana] (TAIR:AT3G19150.1); similar to cyclin dependent kinase inhibitor [Pisum sativum] (GB:BAB20860.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) -0.244706232662345 -1.96294683345997 0.0757202906302549 1 1.04029068080090 3.92299874472591 -0.244706232662345 0.156248805096164
AT2G37380_at 1.56917018942305 2.28904908792621 1.67763366761119 1.76301100773705 1.47797540424765 1.91606262603668 2.11027159211488 2.09158919549042 1.76291306460387 2.50028258541278 1.81840443621433 2.54156037047572 1.98808011802737 1.90136862917314 2.10929937018834 1.56614842484361 1.66126664036418 1.71633468439872 1.97277432420603 0.214740443384245 0.214546278801459 0.215461587395306 0.214020664948630 0.210444116082567 0.212108970094652 0.210755580495877 0.215989032266374 0.219492088578306 0.210444116082567 0.218754483514408 0.217755586816675 0.218955919711682 0.213851136027657 0.210444116082567 0.212686745837709 0.215450805908864 0.213323119529219 0.216361399821689 2 2 + 15694275 15694836 15694617.727 15693837 15695082 + gene protein_coding_gene FALSE TRUE AT2G37380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39370.1); similar to Os01g0836900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044734.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT39179.1) -0.236099081847022 -1.96284486006177 0.075733424459193 1 1.04014470993812 3.85757759246584 -0.236099081847022 0.146615641506443
AT1G01970_at 7.89730249961576 7.9122437470634 7.17252686102869 7.24169697879901 7.8445221353462 7.43343641229447 8.28016496055339 8.19377625079924 7.51249717880462 7.61428961603225 7.72677295537256 8.388728538589 7.44130236167167 7.78749907875999 8.63836788347019 7.91270065341875 7.44234518132451 7.2903099467595 7.50478938360461 0.159855293512360 0.166270612429922 0.161003238705219 0.167861565051933 0.160489962414304 0.166693872200561 0.159454693002798 0.163442618827466 0.182064946917608 0.157989020056986 0.158673747576939 0.158795487713969 0.159441377139936 0.159992299655558 0.161127413748014 0.157888509163187 0.167376059052702 0.176238412009128 0.162405145574486 1 1 + 339367 339872 339589.091 338291 340077 + gene protein_coding_gene FALSE TRUE AT1G01970.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G19525.1); similar to pentatricopeptide repeat protein [Physcomitrella patens] (GB:BAF34329.1); similar to Os07g0661900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060542.1); similar to Os02g0611400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047406.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.181590834433621 -1.96227458199612 0.0758069134342043 1 1.03932843927845 15.4331397562215 -0.181590834433621 0.0737184892036926
AT1G74030_at 3.57154290371632 4.01635766549199 3.34614390649916 3.76717941083286 2.73377605975484 3.92358994575335 4.52815652358211 4.48043800164987 4.18284641457148 4.45444881344221 4.43446673269386 4.63307223012234 4.04048304086286 4.46575933873973 4.50716319260233 4.11582706858189 4.22050537407805 4.21072315960095 4.13766695191759 0.199714145252069 0.208778087723056 0.218294513703283 0.214253396638123 0.213410022021025 0.218740799008043 0.200513979562985 0.220113501962273 0.222147454610223 0.201764973000088 0.207315785625527 0.199468026534687 0.203385713067403 0.202618443191766 0.204876809465625 0.204120946400893 0.210597625590860 0.212257442634079 0.20630039501929 1 1|0 -|/ 27843128 27843869 27843532.6 27842845 27845600 - gene protein_coding_gene FALSE TRUE AT1G74030.1 enolase, putative similar to LOS2 (Low expression of osmotically responsive genes 1), phosphopyruvate hydratase [Arabidopsis thaliana] (TAIR:AT2G36530.1); similar to Os09g0375000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063034.1); similar to phosphopyruvate hydratase [Dictyostelium discoideum AX4] (GB:XP_639231.1); contains InterPro domain Enolase; (InterPro:IPR000941) -0.318136076191767 -1.96148099962007 0.0759092889816114 1 1.03819270942781 8.08930842406207 -0.318136076191767 0.231729513555437
AT4G34760_at 6.53540917347489 6.57880917283534 5.3114781953318 5.76024547538718 6.68861206497863 7.22353025504948 6.85770880933405 7.25987150281493 8.08374673084454 7.12603735837857 8.42203212467325 8.54157984989587 7.76336789642523 7.71443077153048 8.5060946136986 7.80951658360388 7.26277769242134 8.24326342161725 8.58215927283038 0.210869091279048 0.201724031917139 0.229085006107452 0.223069730192618 0.197476731255860 0.196861152203443 0.189268428673385 0.196246386958580 0.201101467623428 0.199136041331500 0.190712340872465 0.210032764196077 0.198592739614035 0.196309289283434 0.210435172522785 0.194927394152042 0.195031837361246 0.215132715299261 0.206526613498848 4 4 - 16582478 16582761 16582599.091 16582188 16582884 - gene protein_coding_gene FALSE TRUE AT4G34760.1 auxin-responsive family protein similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G16580.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.22987404252298 -1.96146667449248 0.0759111381663338 1 1.03817220992660 14.508723409443 -0.22987404252298 0.139644276845842
AT1G60450_at 1.94177260620844 2.12150161788224 1.80432063023811 2.05144384667543 1.61937245676533 1.80026437315716 1.90438550679809 1.77137222460349 2.12770701896315 1.78753850193426 1.61071928340322 1.75467994486575 1.90570255716982 1.66842691793705 1.65710541093935 1.76570337888320 1.81641434472712 1.89730029813376 2.07766471698883 0.205897327631487 0.203618128961932 0.210039633688453 0.203953236257115 0.205341622407534 0.206522804828870 0.200490668539910 0.203819148057543 0.206810529138885 0.208850518575346 0.198991957918296 0.198991957918296 0.203915903469991 0.205430569198085 0.201002421771439 0.202951060425987 0.216850674868573 0.212771859916427 0.206486788857115 1 1 - 22274976 22275932 22275673 22274891 22276879 - gene protein_coding_gene FALSE TRUE AT1G60450.1 ATGOLS7 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 7); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS4 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 4), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G60470.1); similar to galactinol synthase, isoform GolS-1 [Ajuga reptans] (GB:CAB51533.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.177018945559364 -1.96094739339504 0.0759781988004973 1 1.03742915307759 3.75537578927578 -0.177018945559364 0.0656210005636462
AT3G24480_at 4.32053192912046 4.28567464859515 4.31272326101977 3.91853361164438 3.99079949943327 4.28378772044258 4.48265826454110 4.29435388796152 4.98353620752978 5.22654263628377 5.46300140776687 4.900824972072 5.04963991132411 4.66372941763677 5.04400843696762 4.45676381992689 4.63647019879697 4.8799214990139 4.94660338976554 0.264212258556641 0.269169487872136 0.288519900896140 0.267115192276947 0.268892880306088 0.280971048826602 0.258219361703477 0.260724990608771 0.265120982857582 0.258188768372268 0.259247860115907 0.254707896842384 0.257804308979707 0.256980499154699 0.262082565471806 0.255874126781999 0.267462689944027 0.257877405027591 0.265601640112506 3 3 - 8901181 8901724 8901416.091 8901161 8902645 - gene protein_coding_gene FALSE TRUE AT3G24480.1 leucine-rich repeat family protein / extensin family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G18670.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to Os01g0594300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043463.1); similar to Os01g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042204.1); similar to extensin precursor-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91812.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.192388056337220 -1.96094534553191 0.0759784633732792 1 1.03742622288772 9.20564403741036 -0.192388056337220 0.0912280677702199
AT1G77350_at 7.85671153556493 8.07913688744002 8.07155394027509 7.96170681526143 8.24714056051477 7.93287397282912 7.89706922522817 7.64843650382764 7.27053854252722 7.11735979325876 7.30596095326832 7.79155674000701 7.36544014812618 7.07942042184688 7.45470157133853 7.36743693986598 7.02988947026845 7.1775217276049 7.00915422378333 0.194616538879567 0.1812972104707 0.1812972104707 0.183474139938376 0.181604930004885 0.191712294155667 0.185339808501447 0.186132054401162 0.188717063126019 0.195518699863690 0.185877800410219 0.1812972104707 0.185336656270744 0.192669311728921 0.193511344871775 0.1812972104707 0.194087423297135 0.188307896974518 0.192043639595025 1 1|0 +|/ 29075417 29076397 29075823 29075183 29076793 + gene protein_coding_gene FALSE TRUE AT1G77350.1|AT1G77350.2 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01331.1); similar to Os05g0486200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055878.1) 0.186060213777965 1.96000003506507 0.076100683906863 1 1.03607376299418 15.1887496049829 0.186060213777965 0.0815601960505869
AT1G28470_at 2.01761810380905 2.35508654073513 2.52550049530412 2.63973255178179 2.20778851150148 2.26022268332204 2.01257307732930 2.10779272782212 2.86047984962707 3.18135551385377 2.53035156924512 2.42692428478874 2.72498751456489 2.34646217719913 2.39402834611088 2.49252657400614 2.96147026081595 2.82967144629136 3.63598255923192 0.220500783512951 0.214883558447739 0.22095216688816 0.214981728744057 0.221223806709279 0.217482527678276 0.214875620523090 0.213100398419015 0.216925426039804 0.216788543149574 0.215262174572849 0.214151016616135 0.212362197988821 0.209443260710492 0.222356357687739 0.209187454960231 0.213694879945721 0.227581083519073 0.214907963642386 1 1 + 10010705 10011780 10011480.455 10010167 10012184 + gene protein_coding_gene FALSE TRUE AT1G28470.1 ANAC010 (Arabidopsis NAC domain containing protein 10); transcription factor similar to ANAC073 (Arabidopsis NAC domain containing protein 73), transcription factor [Arabidopsis thaliana] (TAIR:AT4G28500.1); similar to no apical meristem (NAM) protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73298.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.176296543944843 -1.95962345592959 0.0761494232834376 1 1.03553506733063 5.17291037604998 -0.176296543944843 0.0644614180861412
AT1G49220_at 0.919249640655781 0.941079784773794 0.767333000379034 1.08171424424169 0.680022999877185 1.02828097253143 0.766947711270208 0.407373412791208 0.82010138090825 0.516863911370287 0.726972570778404 0.834649922343875 0.481665725056608 0.955040136869198 0.89019555058009 0.646429042624329 0.815898897503752 0.74451641369234 0.140833522326361 0.203950555817312 0.203950555817312 0.207461190281111 0.209517625499576 0.2068726336943 0.224392415911707 0.214328544467793 0.203950555817312 0.214918712073421 0.211558951671636 0.203950555817312 0.203950555817312 0.213930282503775 0.209246183049473 0.214187508553423 0.203950555817312 0.206159593346103 0.211212552918555 0.217440312026378 1 1 + 18209810 18210314 18210091.182 18209602 18210369 + gene protein_coding_gene FALSE TRUE AT1G49220.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1K (RING-H2 finger protein ATL10) (ATL1K) [Arabidopsis Thaliana] (GB:P0C034;GB:Q4PSZ7;GB:Q9M9C1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49210.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE81190.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.19999829722368 1.95944306830963 0.0761727805341368 1 1.03527703892775 1.45126053946473 0.19999829722368 0.102364344343713
AT2G47170_at 11.6235139418447 11.5624578355086 11.8450503505460 11.7759514589999 11.7250721668150 11.6148355968397 11.6795027090816 11.8123305430988 11.6046562460775 11.4318538490041 11.8226113129048 11.7666590624892 11.7016633297615 11.7498052317179 11.6774948058982 11.6231719437711 11.6311023186487 11.6885532318706 11.3159940125635 0.073510903139707 0.0691776679849804 0.0724464980434781 0.0734914826118734 0.0682143190317934 0.0713801272115232 0.0698597525569333 0.0691055214034802 0.0777028855212866 0.070084318763678 0.0700961036453584 0.0682143190317934 0.0692043963767878 0.0692318724538907 0.0726976938994106 0.0682143190317934 0.0765312385315099 0.0725677652321048 0.0684864919268662 2 2|0 +|/ 19374354 19375427 19374876.556 19373693 19375910 + gene protein_coding_gene FALSE TRUE AT2G47170.1 ARF1A1c (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G10630.1); similar to ATARFA1E (ADP-ribosylation factor A1E), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT3G62290.1); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.163787044000549 1.95934889747035 0.0761849767674009 1 1.03514233998441 23.2840730039323 0.163787044000549 0.0338665102180407
AT3G10540_at 3.64439050582954 4.03735843930897 3.92120429789147 4.1404459973941 3.89956611019675 4.33057630840879 4.35402030938953 4.38393907552432 3.79516333678214 3.93461537113739 4.28171652524316 4.34730279734040 4.60301046751456 4.5531765643731 3.9420229328727 4.34134590362286 4.19922044075580 3.74172524375264 3.70342357398277 0.202634715525111 0.198781483706885 0.200806304303350 0.197056052047205 0.198811780306851 0.204971717045190 0.195865279891312 0.206019810033727 0.210327489791835 0.196582150398941 0.201368851617348 0.198439907910657 0.200632849471968 0.205579535060751 0.210255875651350 0.199448247978106 0.198090516509171 0.200450801525544 0.206797415835128 3 3|0 +|/ 3291626 3292221 3291894.333 3289700 3292707 + gene protein_coding_gene FALSE TRUE AT3G10540.1 3-phosphoinositide-dependent protein kinase, putative similar to PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G04510.1); similar to 3-phosphoinositide dependent protein kinase 1 [Zea mays] (GB:ABB71956.1); similar to 3-phosphoinositide-dependent protein kinase-1 [Lycopersicon esculentum] (GB:AAW38936.1); similar to Os01g0872800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044948.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.204071889046660 1.95912056450559 0.0762145561188844 1 1.03481575136636 8.12006639886052 0.204071889046660 0.107955549969118
AT1G14770_at 2.61863421223743 2.61985913808576 2.92349306934271 3.10361983408711 2.96593197362503 3.0668466612234 3.2187942389754 2.79608366176787 2.98687057095738 2.64033700135077 3.02870059409750 2.88257182409615 3.1607042862496 3.34228629852452 2.98939193999713 3.13397046268343 3.08003328469773 3.17835818841199 3.16104168617115 0.208562206334354 0.193205491448766 0.192965586198182 0.197270354414514 0.195424348269307 0.200097921660346 0.194060735773797 0.195231092803013 0.206638181034649 0.191866439824856 0.191866439824856 0.196557207589440 0.198556472311394 0.191866439824856 0.194140181368836 0.194746312366690 0.196471506616339 0.1951065842981 0.196337994763803 1 1 - 5086890 5087398 5087169.455 5086621 5088841 - gene protein_coding_gene FALSE TRUE AT1G14770.1|AT1G14770.2 similar to PHD finger protein-related [Arabidopsis thaliana] (TAIR:AT1G68030.1) 0.185857881077300 1.95883324746794 0.0762517917296145 1 1.03440481998424 5.92861711333702 0.185857881077300 0.0814120870089615
AT1G52560_at 0.965338720786068 1.07269832188931 1.46450020344150 1.55491598225043 1.34782810729593 0.991993737076874 1.24559908074801 0.867115631122437 1.45754165519132 1.37880243228679 1.27507879544737 1.39021465532265 1.7885794842594 1.16760496936099 1.41525958469208 1.42252902359613 1.62490850445248 1.47251835367982 1.24342897647629 0.193212376915423 0.199536226773185 0.205275182934674 0.198175023159938 0.196029772493214 0.193544570430232 0.200785564421088 0.195302823871579 0.198240282616865 0.197499971963364 0.196959305169344 0.192781663726241 0.202039034248465 0.196308793070562 0.195636854815130 0.193044272690675 0.198868609544842 0.195781772996164 0.195946387404898 1 1 - 19578515 19579295 19578873.636 19578429 19579535 - gene protein_coding_gene FALSE TRUE AT1G52560.1 26.5 kDa class I small heat shock protein-like (HSP26.5-P) similar to HSP21 (HEAT SHOCK PROTEIN 21) [Arabidopsis thaliana] (TAIR:AT4G27670.1); similar to chloroplast-localized small heat shock protein 22 [Funaria hygrometrica] (GB:AAF19022.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.193391942789813 1.9581552209608 0.0763397294586439 1 1.03343518403959 2.59100423607774 0.193391942789813 0.0931234976567563
AT1G44110_at 1.81002391370160 2.00939187180337 1.87727038909944 2.13961516794353 1.18730150207270 1.70348587395951 1.77091880522088 2.1625364218225 2.32023270157742 2.59874481788184 1.75085374863355 2.23710729230657 1.87846152601286 2.17843888915719 2.35019113891409 1.91587574824575 1.98199781827583 2.53371377467613 2.06427014517065 0.190459394058629 0.197847622112197 0.199256472164335 0.194372306822 0.200549332304182 0.190459394058629 0.194553758667474 0.191698027352169 0.197827504114721 0.193087078801317 0.190714325722494 0.195647363641736 0.196580410283319 0.195560645059454 0.195954840668383 0.190459394058629 0.203022635841017 0.193650406864665 0.195019077573032 1 1|0 -|/ 16777490 16778308 16777855.444 16777305 16779682 - gene protein_coding_gene FALSE TRUE AT1G44110.1 CYCA1;1 (CYCLIN A1;1); cyclin-dependent protein kinase regulator similar to CYCA1,2 (CYCLIN A1,2), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G77390.1); similar to cyclin (GB:AAA51660.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.217859374691925 -1.95776724387607 0.0763900911852292 1 1.0328804083875 4.04810759998846 -0.217859374691925 0.125793365978047
AT1G33710_at 2.17412811259775 2.18161057632615 2.47230355215875 1.98674794378144 1.76059927033520 2.16394512485705 1.93831575314961 2.10329937859287 2.87781224340752 2.41697549518397 2.38249022791389 2.20966479337349 2.03697233750005 2.14329126356232 1.99394821579823 2.03343334742815 2.25008243102213 2.60881657158936 2.56297184463696 0.205650950319457 0.202494676763058 0.202897350728892 0.206086740294007 0.202494676763058 0.206801366962206 0.208649369901439 0.202494676763058 0.227641893990615 0.202494676763058 0.216054360697098 0.203660566023987 0.205967282971874 0.205726248086919 0.206748753284870 0.202494676763058 0.210591101820384 0.207804553287103 0.210385247874915 1 1 + 12219745 12220153 12219981.4 12219637 12220269 + gene protein_coding_gene FALSE TRUE AT1G33710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60720.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.207677639134757 -1.95774395606960 0.0763931150634242 1 1.03284711022082 4.51091401044132 -0.207677639134757 0.112914383561825
AT4G32060_at 11.8926900182859 11.7607485355223 11.9810820709988 11.7689623684936 12.0556191874769 11.8878842762919 11.6359923618857 11.4045090054841 11.7442206994912 11.6854759553921 11.8354443932108 11.8477897066048 11.8862007875834 11.7944497515908 11.6477626069634 11.9678877841944 11.9588589116521 11.7841144141297 11.7803421786827 0.0587415678268489 0.0569251072424246 0.0569251072424246 0.057297515018331 0.0589628817727696 0.0569541409460611 0.0579332260272618 0.0584581638716593 0.0625236239297562 0.0615261939716124 0.0577688836186321 0.0569251072424246 0.0574801865759864 0.0655629277183385 0.0605308512458628 0.0576662470524048 0.0652921712830081 0.0576075790285307 0.0584633962333112 4 4 + 15502829 15503265 15503069.909 15501084 15503599 + gene protein_coding_gene FALSE TRUE AT4G32060.1|AT4G32060.2 calcium-binding EF hand family protein similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE93293.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.176767964411654 1.95772277914964 0.0763958649435914 1 1.03281683046158 23.5869325558948 0.176767964411654 0.0656976379652518
AT1G34360_at 2.88172932346210 3.16547845253206 2.99936473415771 2.88696862150329 3.84086458307362 3.18504291032936 2.88977670178595 2.95688477319951 3.15719813918181 2.92154988845074 3.00612778959538 2.77914917228588 3.01695235966191 2.97788377008559 3.17916174929299 2.86675553424860 2.42708474919255 3.62832726804425 2.33384059650878 0.257679744360095 0.257679744360095 0.271334869689248 0.260334544951164 0.289097129349622 0.257679744360095 0.274652075544505 0.257923037992795 0.268208563588689 0.277718543036229 0.258671794620225 0.257679744360095 0.259414557028092 0.25907835734712 0.274559175880427 0.263297733260703 0.26418185586881 0.266678694647292 0.257679744360095 1 1 + 12545484 12545731 12545611.375 12542841 12546150 + gene protein_coding_gene FALSE TRUE AT1G34360.1 translation initiation factor 3 (IF-3) family protein similar to DNA binding / ligand-dependent nuclear receptor [Arabidopsis thaliana] (TAIR:AT1G44191.1); similar to Os02g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045586.1); similar to translation initiation factor IF-3 [Arthrobacter sp. FB24] (GB:YP_830971.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) 0.217788495262437 1.95767949945294 0.076401485215257 1 1.03275494754672 5.99545201605445 0.217788495262437 0.125718229936094
AT4G11200_at 2.38702580064847 2.38156075867612 2.51144370330603 2.4058869050918 1.82830504466009 2.09088846120320 2.22901963736208 2.30083441882507 2.67729450987125 2.77813605118407 1.82069108880569 2.55900071808431 2.76021922385848 2.25452237478942 2.48312785102727 2.34629045032179 2.60613278483894 2.62480541916168 2.51120430188292 0.173596245761120 0.180889910928593 0.181435402802895 0.181134000849665 0.174223216865278 0.177286319931434 0.174264367263194 0.173596245761120 0.173806904539414 0.181235340350550 0.185507336655197 0.174899248481716 0.173644745709465 0.177606088865072 0.183480459812478 0.173596245761120 0.184353625739120 0.173596245761120 0.173596245761120 4 4 - 6827768 6828311 6828024.364 6827754 6829492 - gene protein_coding_gene FALSE TRUE AT4G11200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30370.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABF95707.1); contains InterPro domain Plant MuDR transposase; (InterPro:IPR004332) -0.169587670382229 -1.95758414120787 0.0764138697284413 1 1.03261860286532 4.81056743780846 -0.169587670382229 0.0505365599624468
AT3G46810_at 1.55189093515417 1.17003199531648 1.49117819803014 1.57417005668191 1.35948101058825 1.66659059356333 1.30950793907357 1.43421791062245 2.16302277494007 1.88720501417384 1.16586090920130 1.50396048271048 1.39537829417903 1.54711690003699 1.33009755917560 1.62646947592767 1.65556264665545 2.08530964691409 2.17737015339095 0.205035878132839 0.207259185124803 0.203013767453877 0.207074351699567 0.207684044675284 0.212236997732673 0.211171200214347 0.203726076032530 0.212572476568912 0.212511747446947 0.212369158421222 0.200387427296727 0.206814563448667 0.209494950649208 0.205520355642519 0.20346414048088 0.217843748077550 0.205978554826302 0.211291968487442 3 3 - 17249460 17249972 17249718.364 17249221 17251608 - gene protein_coding_gene FALSE TRUE AT3G46810.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19660.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37620.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G46800.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.190351860905318 -1.95742545606958 0.0764344828682003 1 1.03239171874168 3.2519263149713 -0.190351860905318 0.0886764200883003
AT1G19160_at 1.22198454727402 1.17378166169117 1.23898489777363 1.24246950912063 1.35950142809958 1.45086289290895 1.26766491615232 1.22399596288291 1.55929459002472 1.63786683948535 1.16147544564102 0.884853767053338 1.16526501443999 1.29469184866489 0.885538769245574 1.49676199910984 1.02590946440949 1.09007971280409 1.44451707852348 0.188468631714419 0.183733080800871 0.197052081603159 0.187872903330681 0.193310347827732 0.19102773095269 0.185835604428187 0.185420284085716 0.184264067914418 0.195494830225299 0.184972700993627 0.183941484754178 0.201933409027972 0.186409860997707 0.182486521785175 0.186916620235157 0.193083186832162 0.182880352459131 0.182736325765990 1 1 - 6614177 6614663 6614401.182 6614153 6614815 - gene protein_coding_gene FALSE TRUE AT1G19160.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G52610.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.160278128348948 -1.95742327871558 0.0764347657416278 1 1.03238860566918 2.60880481299567 -0.160278128348948 0.0194172850003174
AT2G34920_at 1.89447946774042 2.21241423900745 1.95131523662157 1.82159432025086 1.96410782524494 2.08343658371164 2.29534371861479 2.65378982063282 2.4606965715516 1.91940032978631 2.82379471812204 2.21110055540118 2.11745694580830 2.17607558004229 2.58247293277858 2.34345928117902 1.55787123029024 1.88135506692093 2.46879604925331 0.218983752782704 0.211938700411961 0.21614391879476 0.226012811790214 0.220764007379392 0.216366029255004 0.213715636219095 0.216893945862392 0.215615544197785 0.212086977580935 0.228164021577485 0.223213633929314 0.212333927347374 0.215612095856097 0.224331797835562 0.211938700411961 0.224326041751765 0.221551832060566 0.215250511956647 2 2|0 -|/ 14735462 14736186 14735871 14735106 14738235 - gene protein_coding_gene FALSE TRUE AT2G34920.1 EDA18 (embryo sac development arrest 18); protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G30860.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31049.1); similar to Os03g0107500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048693.1); similar to Os02g0823300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048568.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.190079674043768 -1.95683720922826 0.0765109410356397 1 1.03155072673689 4.35689145431884 -0.190079674043768 0.0883482610583148
AT3G54480_at 7.99281876983108 7.9083482450376 8.09592876539188 8.29002269143115 8.78571569575924 8.35036352669015 7.9640503842446 7.71575456920403 7.62360094766596 7.61915715007602 7.49726100857626 7.43484957173725 7.94673353813562 7.77880130711489 7.36286844846251 7.7653368323714 8.03264055635766 7.73814387921025 8.13331575999447 0.150143925778509 0.144776802806575 0.157869140313870 0.147508510536406 0.151532700758819 0.152991269699808 0.145997543858463 0.152179997276761 0.148578652804111 0.147140388215008 0.148996567437453 0.151093884760984 0.145447527396184 0.150684520357355 0.147752075794305 0.144769268869672 0.152030352584928 0.147799736960289 0.144585539736550 3 3|0 -|/ 20181878 20183572 20182267.625 20181663 20184394 - gene protein_coding_gene FALSE TRUE AT3G54480.1|AT3G54480.2 SKIP5 (SKP1-INTERACTING PARTNER 5) Encodes an SKP1 interacting partner (SKIP5). similar to SKIP5-like protein [Lycopersicon esculentum] (GB:AAL05932.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)|similar to SKIP5-like protein [Lycopersicon esculentum] (GB:AAL05932.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.193909725619512 1.95632162566836 0.076578013176988 1 1.03081370771786 15.8811773369443 0.193909725619512 0.094150332919045
AT3G02200_at 7.981573953473 8.21432387942412 7.60961185390522 7.42253899064767 8.33348791413103 8.11535639278452 8.03464788567643 7.89764909834298 8.00688131076358 7.563009405032 7.6750938251754 7.66980533860525 7.78182379234558 7.58875823160992 8.06160940236658 7.3512849997164 7.55384511267348 7.05952389907976 7.79062537320696 0.201324422027569 0.186520526363377 0.202498862741365 0.210469855319123 0.190707499848323 0.206591093920277 0.190239171157719 0.191709773356976 0.216321161648145 0.194898032089479 0.196059058547945 0.186826086857606 0.192669126460976 0.188235378391032 0.188984373085232 0.202591375283360 0.213442934255603 0.200433213436453 0.192420071483147 3 3|0 +|/ 407872 408888 408286.75 406601 409170 + gene protein_coding_gene FALSE TRUE AT3G02200.1|AT3G02200.2 proteasome family protein similar to proteasome family protein [Arabidopsis thaliana] (TAIR:AT5G15610.1); similar to unknown [Solanum tuberosum] (GB:ABB29949.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717)|similar to proteasome family protein [Arabidopsis thaliana] (TAIR:AT5G15610.2); similar to unknown [Solanum tuberosum] (GB:ABB29949.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) -0.177960268749828 -1.95593559666904 0.076628267384884 1 1.03026193967327 15.6409271318135 -0.177960268749828 0.0682456184516604
AT4G27680_at 7.1642698218462 7.5723524867286 7.35816291361541 7.62195418562019 7.66352605373913 7.67921943608116 8.1222172794069 8.03919494156327 6.3616553620869 6.8618596738972 5.93136956344422 6.02610545626032 6.98086143722338 6.3575155867806 6.51566509871676 6.78063009818415 7.13405186932505 6.49698756520481 7.05693286641741 0.208288166923992 0.201207387381808 0.206951812467553 0.202362038525203 0.199742759594468 0.204483913177727 0.199920904931647 0.206971695470955 0.205666759689302 0.196526089275384 0.194297459801117 0.202170993795985 0.205155337729222 0.202141088257775 0.208839130679807 0.197836377302175 0.207598418344436 0.195639895565362 0.200737474320108 4 0|4 /|+ 13822517 13823051 13822788.667 13821112 13823348 + gene protein_coding_gene FALSE TRUE AT4G27680.1 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to MSP1 protein, putative / intramitochondrial sorting protein, putative [Arabidopsis thaliana] (TAIR:AT5G53540.1); similar to Os06g0714500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058575.1); similar to AAA+-type ATPase (ISS) [Ostreococcus tauri] (GB:CAL52837.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.188021975765178 -1.95557965032938 0.0766746325295992 1 1.02975321158255 14.2966359574216 -0.188021975765178 0.085352322894643
AT4G37460_at 8.04718016964774 8.71981053675143 8.53418147648973 8.53566152602 9.31083916861878 8.3759482320544 9.05785191356358 8.89842538867147 8.64287260072927 8.99127881102419 8.57439940991183 8.5282142964564 8.64820093338949 8.47324533456566 7.79235677928807 8.75779781112677 7.78876426745269 8.0395448909247 9.08503729536014 0.191121033957805 0.187182799319060 0.194521855528779 0.204281656645003 0.187182799319060 0.199295746128420 0.192714126088882 0.187182799319060 0.206496033851681 0.188431901942190 0.187280030703618 0.187182799319060 0.187275709664631 0.196271779889461 0.195094593164744 0.187182799319060 0.213894211805909 0.215492163324876 0.191161110397958 4 4|0 -|/ 17608618 17609493 17608997.9 17608371 17615770 - gene protein_coding_gene FALSE TRUE AT4G37460.1 tetratricopeptide repeat (TPR)-containing protein similar to SEC (SECRET AGENT), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G04240.1); similar to Os07g0113700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058749.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85771.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.286370085838957 -1.95534752832549 0.0767048825143155 1 1.02942147802438 17.3008431520241 -0.286370085838957 0.201210686740975
AT3G07010_at 7.55979819146347 7.61332055922575 3.19337068920975 3.26095226515289 4.73182946788075 4.39549846474094 3.57735495445108 3.89780932284068 6.71716057998254 5.12941950577251 9.24012873630837 9.38165303631398 8.74548880187101 8.2329059295611 9.3847559045792 8.0377674842143 4.78784628048096 7.16443498060203 8.33319765756945 0.235948799169659 0.234323321715264 0.236486912817043 0.239679682534184 0.244089740385762 0.248107065623182 0.241753997336533 0.248535597875884 0.248002980937014 0.263430274197817 0.233467420234664 0.232493760340054 0.235316614409335 0.240764118166908 0.231067258082656 0.231265243319757 0.256395943391915 0.235876650466477 0.239009201656883 3 3 - 2213003 2213822 2213334 2212734 2216489 - gene protein_coding_gene FALSE TRUE AT3G07010.1 pectate lyase family protein Identical to Probable pectate lyase 8 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9M8Z8;GB:Q8LF66); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.185688986057980 -1.95475219592417 0.076782516565568 1 1.02857074544485 12.2029743520454 -0.185688986057980 0.0817656200074014
AT3G10860_at 10.9403512248321 11.0702879972866 11.4304911093652 11.406032189251 11.2534568262774 10.954704282355 11.1454398107771 11.1517048933583 11.1079534259766 11.0910805304448 11.2807991205397 11.3385683322403 11.1949491029833 11.1002266588979 11.2126653192892 11.3064680518592 11.1098903277598 11.2314241565195 10.9874729293354 0.0719027513141995 0.0715842977295957 0.0741096345404029 0.073607408966461 0.0707395678251797 0.0756684866052785 0.0704205784090613 0.0708293574995596 0.0821326412619033 0.0723516312837575 0.071764731715464 0.0710455790305733 0.0703209185147958 0.0806638832402442 0.0728165740366367 0.0725148731340938 0.0783993222320297 0.0709453946555618 0.0729347680462724 3 3|0 +|/ 3399880 3400495 3400032.889 3399741 3400746 + gene protein_coding_gene FALSE TRUE AT3G10860.1 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative similar to ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative [Arabidopsis thaliana] (TAIR:AT5G05370.1); similar to Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C (Ubiquinol-cytochrome c reductase complex 8.2 kDa protein) (GB:P46269); contains domain Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (SSF81508) 0.171965021045422 1.9544527863147 0.0768215885416491 1 1.02814292997250 22.3110799645278 0.171965021045422 0.0565478820830575
AT1G02475_at 10.1953847653391 10.4185357630845 10.7462369660871 10.7006315438806 10.9837108795989 10.4704696178744 10.8609094560565 10.5258111825840 10.2865149974130 9.99786302140169 10.2672646085731 9.93067729757301 10.3114722423056 10.2985553070718 9.99776963136512 10.4838306662808 10.3579519523118 10.1965979070288 9.83819625102188 0.110151853123045 0.108774920594105 0.114457120652095 0.110586440946646 0.108434748139966 0.125600859146160 0.110389852426058 0.108955808347362 0.122416768426046 0.116237122258258 0.110811698721735 0.108434748139966 0.108434748139966 0.113501224761609 0.113952686852278 0.108434748139966 0.113163531323015 0.115482128059204 0.113638644328169 1 1|0 -|/ 514120 515241 514806.286 513843 515404 - gene protein_coding_gene FALSE TRUE AT1G02475.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01883.1); similar to Streptomyces cyclase/dehydrase [Medicago truncatula] (GB:ABE82400.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) 0.207379410856224 1.95316019743140 0.0769904793970041 1 1.02629632098368 20.7483977925678 0.207379410856224 0.113160240613929
AT4G17910_at 1.45456611357265 1.59509806283805 1.99667896877545 1.84926232555888 1.52943262809746 1.66951908150502 2.03844942540036 2.14574071703052 2.4225975006193 2.35857727943485 2.12118914752367 2.13795188179180 2.05472375368975 1.74303963874754 2.22518108617892 1.98618523420007 1.81691124125932 2.41596361355336 2.27067571298233 0.208748880886381 0.201632905510854 0.205454198358967 0.206703059153022 0.205170603671168 0.213929352998396 0.204068136406070 0.201632905510854 0.210514786548329 0.209192669655225 0.208175292142609 0.214662408557681 0.207958926796225 0.210411362514379 0.203237224850259 0.205602711666471 0.223245223869631 0.208838029235753 0.202254128741308 4 4 - 9948901 9949438 9949171.818 9948866 9960416 - gene protein_coding_gene FALSE TRUE AT4G17910.1 zinc finger (C3HC4-type RING finger) family protein / pentatricopeptide (PPR) repeat-containing protein Identical to Putative RING-H2 finger protein ATL4H (ATL4H) [Arabidopsis Thaliana] (GB:P0C041;GB:O49690); Identical to Hypothetical PPR-repeat protein At4g17915 [Arabidopsis Thaliana] (GB:P0C043;GB:O49690); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46680.1); similar to Putative RING-H2 finger protein ATL4H (GB:P0C041); similar to Hypothetical PPR-repeat protein At4g17915 (GB:P0C043); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.167606980060148 -1.95294414992960 0.0770187420048563 1 1.02598772414310 3.9914734306624 -0.167606980060148 0.0466338270302704
AT2G35480_at 2.24240277516545 2.09455640870489 2.05803047806402 2.15939222626644 2.40073088858465 2.21052179147918 1.83601784877225 2.50819570597683 2.785098095111 2.51916855859508 3.1989885190973 3.29046468085475 2.45928442386629 3.05487212266895 2.97764728090994 2.6773821424091 2.94359954392873 2.6586641738196 2.23018907148417 0.211372734809302 0.214344325220773 0.209769292153264 0.205804275371153 0.205804275371153 0.205804275371153 0.218996128196604 0.206665222511887 0.206999091222160 0.206018272082475 0.208328521841331 0.206581844713699 0.205804275371153 0.212730384242064 0.208063660417144 0.205804275371153 0.219749256208930 0.208501654788040 0.205804275371153 2 2 + 14918472 14918785 14918633.778 14917489 14919127 + gene protein_coding_gene FALSE TRUE AT2G35480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32260.1); similar to Os02g0127900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045765.1) 0.216501640328982 1.95273858182211 0.0770456426862296 1 1.02569410947979 4.89828006671392 0.216501640328982 0.124807729531795
AT3G24515_at 3.63978739665785 3.98826876929879 3.58152512961353 3.59755748711653 3.46812176866754 3.90623861159214 3.04264580643639 3.22350324163698 3.20231321511011 3.97592234776896 3.87010370903091 3.71298044788189 3.91761625819954 3.84585240673574 3.77971069169707 3.58903017353269 3.93232117060004 4.03985950242742 3.63044396690123 0.184776497150849 0.186938517101263 0.202714868929739 0.185375595924725 0.195919476908022 0.191532549579514 0.193169688439727 0.187078616181356 0.191678394618790 0.195265072468046 0.183563554213704 0.188346177568916 0.185754526240535 0.196937830812287 0.185016292014233 0.189819229044241 0.197011153515489 0.216409883522777 0.185589143833896 3 3 - 8934577 8935105 8934874.091 8934479 8936286 - gene protein_coding_gene FALSE TRUE AT3G24515.1 UBC37 (ubiquitin-conjugating enzyme 34); ubiquitin-protein ligase similar to UBC11 (ubiquitin-conjugating enzyme 11), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G08690.1); similar to ubiquitin conjugating enzyme-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52670.1); similar to Os01g0605300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043518.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.198925282079832 1.95258322736181 0.0770659781935815 1 1.02547222424046 7.27536976218077 0.198925282079832 0.101845585734366
AT1G75760_at 5.43435762104431 5.75264766803654 5.32680859070509 5.23625359444472 6.03496627200095 5.21912442105208 5.24941440123458 5.34472808132203 3.62835788227404 4.264588427487 5.18122062497972 4.68272325597304 4.95633426380364 5.04779394417992 4.32312472222972 4.43225238071312 4.49601855902636 4.39379125298572 4.75727295011375 0.250954855053557 0.247590286155592 0.26409131071481 0.252441407357768 0.257945347120522 0.268644095776736 0.250897467011752 0.256465852203054 0.275029979935133 0.250139716400924 0.262899622169625 0.248812755556544 0.247590286155592 0.256161564650143 0.259868076773795 0.249039257098102 0.261010653251323 0.253831224784469 0.253771940045666 1 1|0 -|/ 28450787 28451588 28451111.222 28450293 28452307 - gene protein_coding_gene FALSE TRUE AT1G75760.1 ER lumen protein retaining receptor family protein similar to ER lumen protein retaining receptor family protein [Arabidopsis thaliana] (TAIR:AT1G19970.1); similar to ER lumen protein-retaining receptor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33333.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) 0.240709449418076 1.95245291043916 0.0770830401976237 1 1.02528610477728 9.90273614561904 0.240709449418076 0.15324783274395
AT2G43660_at 1.41151589145801 1.58029190188575 1.90472287396491 1.66874606456959 1.74015598905818 1.34600255423718 1.77629028337201 1.76632663750437 1.95917927501912 1.85598718408629 1.25246667198965 1.37755250407622 1.47504147658348 1.65398491784578 1.39415071241427 1.75521922008375 1.35131699869973 1.77923084182902 1.91710584512729 0.194289109420123 0.194402240615512 0.199224120233554 0.19816152641915 0.195996237579147 0.197247352667884 0.195918156037671 0.197100017587789 0.201189044306603 0.198290870048814 0.194453377815884 0.195042565180277 0.205253304152801 0.195835209062375 0.194289109420123 0.204435299670777 0.195363430897803 0.208869031054783 0.194289109420123 2 2|0 -|/ 18111042 18111586 18111249.875 18110828 18111658 - gene protein_coding_gene FALSE TRUE AT2G43660.1|AT2G43660.2 glycosyl hydrolase family protein 17 similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT2G43670.1); similar to Os01g0243700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042566.1); similar to glucan endo-1,3-beta-glucosidase precursor (ec 3.2.1.39) ((1-3)-beta-glucan endohydrolase) ((1-3)-beta-glucanase) (beta-1,3-endoglucanase) [Oryza sativa (japonica cultivar-group)] (GB:AAX95270.1); similar to Os11g0704600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068545.1); contains InterPro domain X8; (InterPro:IPR012946) -0.187293162450781 -1.95222341944017 0.077113095301544 1 1.02495835729884 3.35707045084848 -0.187293162450781 0.084713148144398
AT4G28000_at 1.95458597116029 2.01262784363294 2.06664831472055 2.34811460608494 1.70277995221727 2.49664259865433 1.40383167497586 1.93434220538553 2.10094253892402 1.81315467577080 2.15809757700662 2.01059141679282 1.82654059702397 2.06554403555289 2.08136277292993 1.85023075704349 2.51915573297257 1.95699520827821 1.69352844214979 0.219854359276150 0.221075759544177 0.225805281662088 0.223404068286609 0.219666778283090 0.223883704338814 0.229332023651667 0.22696867980431 0.237378601879146 0.223024174095550 0.231461095800972 0.225745664419646 0.224418657807831 0.223433666022476 0.228416608974813 0.219425749350969 0.223337310974001 0.225392185883657 0.223096581463341 4 4|0 +|/ 13928382 13929260 13928667.2 13925462 13929286 + gene protein_coding_gene FALSE TRUE AT4G28000.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G64110.2); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G52882.1); similar to AAA ATPase, central re (GB:ABE83074.1); similar to AAA ATPase, central re (GB:ABE87117.1); similar to AAA ATPase, central re (GB:ABE79750.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.25827782702457 1.95173161842244 0.0771775403076002 1 1.02425604789331 3.95383330309476 0.25827782702457 0.172556540770041
AT2G34910_at 1.11154385262373 1.19379905212306 0.981342952853978 1.53102142974476 0.922210842668272 1.26315014448429 1.08471651802889 0.831692391487273 1.57656073515096 1.63782890502884 1.27676421262023 0.845432172455663 0.519696865949041 1.36158557096540 1.08016415775306 1.54220160509542 1.67973307742154 1.43193655661426 2.07361005069956 0.201674163978205 0.199029105494094 0.192743803465142 0.198777373556241 0.196874816403074 0.194451594066044 0.193184812338578 0.198576297867668 0.191441247942955 0.201937074745529 0.191813115998835 0.203978969261682 0.20452768682818 0.197294938106763 0.203760134062660 0.210816300141622 0.197284294220747 0.202546793061491 0.197941967083900 2 2 + 14734268 14734810 14734523.727 14733879 14735207 + gene protein_coding_gene FALSE TRUE AT2G34910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30850.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61849.1) -0.213241948697519 -1.95057258223188 0.0773296170193861 1 1.02260120526872 2.60486256849467 -0.213241948697519 0.121036015669910
AT2G15240_at 6.55816833399493 7.55508078021158 6.77043048982248 6.83191685349656 8.10497578554267 7.42017176588026 7.02955625835089 7.05816296762494 5.92999280185157 5.04643533398873 5.85864180976486 6.02943240860509 6.07723086350401 6.39281661251433 5.48850311362198 5.674197279457 5.92141410563596 6.0731425175507 5.77266542796434 0.303460290145402 0.28535473468359 0.297658731599518 0.286630128900980 0.282957950292714 0.287609518773444 0.292652037451844 0.291121207550046 0.299037690476195 0.284688425974068 0.282957950292714 0.282957950292714 0.282957950292714 0.294050011989890 0.298006633204046 0.283655900538511 0.305665796662091 0.287956738448709 0.282957950292714 2 2|0 -|/ 6623222 6624545 6623808.444 6622607 6626056 - gene protein_coding_gene FALSE TRUE AT2G15240.1 UNC-50 family protein similar to Os09g0109500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062566.1); similar to hypothetical protein DDBDRAFT_0184329 [Dictyostelium discoideum AX4] (GB:XP_629704.1); contains InterPro domain UNC-50; (InterPro:IPR007881) 0.294011394768387 1.95052999098851 0.077335210701386 1 1.02254040266135 12.9272846677488 0.294011394768387 0.209631271685272
AT4G12400_at 1.54776800988374 1.66601777948738 2.10952402301823 2.12616966118555 1.54081885640805 1.65877551478011 1.45405708221511 1.75748244951360 1.65183968932618 1.77338203317502 1.86929216464869 1.46237053866371 1.86276910435456 1.70584933261541 1.82369292024980 2.28539612119951 1.72101431925993 2.18024889841614 1.88427070016273 0.177993580221712 0.177455946511288 0.175640163568056 0.177040096504112 0.178248065971380 0.175640163568056 0.176331838217619 0.179705018412662 0.188426314207511 0.176534311998033 0.175640163568056 0.178353375848423 0.178103107533142 0.178206680716028 0.181631842808139 0.188008915051907 0.178863610521967 0.176973482062804 0.185102769259926 4 4|0 -|/ 7338874 7339673 7339283.2 7338656 7341358 - gene protein_coding_gene FALSE TRUE AT4G12400.1|AT4G12400.2 stress-inducible protein, putative|binding similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G12270.1); similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047563.1); similar to Os04g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053429.1); similar to Heat shock protein STI (Stress-inducible protein) (GmSTI) (GB:Q43468); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G12270.1); similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047563.1); similar to Os04g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053429.1); similar to Heat shock protein STI (Stress-inducible protein) (GmSTI) (GB:Q43468); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) 0.173244525472175 1.95040766988578 0.07735127772204 1 1.02236578211925 3.54940666330177 0.173244525472175 0.0600080146262197
AT2G39370_at 1.27449861453698 1.36618910670674 1.29105126026296 1.50584347354458 1.65421056668930 1.79641783539269 1.19713795777976 1.47667683904060 1.44043119375199 1.14338363998244 1.26316442494072 0.89588255124356 1.53604089277888 1.55693411827895 1.08410199333152 1.38509843698916 1.69038859979470 1.35108961449566 1.08918956709669 0.18836017747372 0.204003623745294 0.192543038204569 0.19628439042941 0.190907883329172 0.195047461092360 0.191489613120763 0.196454782072458 0.198890986971205 0.195125307218947 0.188461843379382 0.189059508011924 0.192721728953204 0.190202435265067 0.189848742720850 0.189459736642405 0.187964686712231 0.193304034943182 0.192172557439655 2 2 - 16451360 16451933 16451620.727 16451208 16452344 - gene protein_coding_gene FALSE TRUE AT2G39370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37380.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT39179.1) 0.177128966580486 1.95018778038463 0.0773801682660108 1 1.02205188888218 2.73008939637354 0.177128966580486 0.0676702896031083
AT1G23490_at 10.8494293250102 10.7725406442414 10.5535589765477 10.4590683854996 10.4152544830047 10.4706261662193 10.6194528548139 10.5354573291582 10.6877689069351 10.562615500281 11.4053376735722 11.4327039066992 11.1503101983670 10.9618027486154 11.2743200620668 10.9976044894474 10.7668285510756 10.6764455137980 10.3736415937574 0.0867821783210844 0.084188879227815 0.0857384707054266 0.084720591505443 0.0849205650282026 0.0848353267775943 0.0855841580816274 0.0849603911285688 0.0906717266906011 0.084188879227815 0.0853293349801242 0.084188879227815 0.0858348816032511 0.0883436441806196 0.0863246661476365 0.084188879227815 0.0869425358458299 0.0865001230333479 0.089158425284912 1 1|0 +|/ 8337221 8338224 8337856.25 8336690 8338661 + gene protein_coding_gene FALSE TRUE AT1G23490.1 ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ADP-ribosylation factor [Gossypium hirsutum] (GB:CAD12855.1); similar to ADP ribosylation factor 002 [Daucus carota] (GB:ABB03801.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.161117053571306 1.94798170617670 0.0776705723010207 1 1.01890355627951 21.3966790922017 0.161117053571306 0.0273413294443177
AT3G48360_at 3.95667833487619 5.05086858967761 3.01344631550689 3.09123577930217 4.43173397016961 4.35400583558234 2.19603716502660 2.58742203450997 2.39122261533732 2.56925928913575 2.9353736177266 3.16205000484054 2.40166663814543 2.70094205619282 3.04401618283462 2.41638970683094 2.49679384026117 3.45219962490367 2.62694734777747 0.256867027056566 0.244659340266568 0.230250613602226 0.232157781896222 0.237247897317817 0.249020765549966 0.233074578975242 0.24221672894724 0.243277161859621 0.230293615439768 0.235257374695819 0.232012191156417 0.228761975489565 0.235196893723160 0.230219619843059 0.230169764753054 0.240732750189079 0.244953395888864 0.231445381662834 3 3|0 -|/ 17919970 17920607 17920163.7 17919177 17921510 - gene protein_coding_gene FALSE TRUE AT3G48360.1 BT2 (BTB and TAZ domain protein 2); protein binding / transcription regulator encodes a protein (BT2) that is an essential component of the TAC1-mediated telomerase activation pathway similar to BT1 (BTB and TAZ domain protein 1), protein binding / transcription regulator [Arabidopsis thaliana] (TAIR:AT5G63160.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71259.1); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.285944909500561 1.94712705335322 0.0777833492484781 1 1.01768427927840 6.26283952460667 0.285944909500561 0.202002113447388
AT2G14880_at 7.70497758157714 8.00497294863373 7.28279387804811 7.53448196698532 7.96209582783282 7.54947555855797 8.3611768800859 8.54936821463471 7.476343417747 7.76068367289619 7.25376000670888 7.94209237703908 7.7522183868094 7.44987106457096 8.59524210994701 7.76897618586597 7.95465791401011 7.32744204856563 7.50898989989748 0.158259385469959 0.152693702258543 0.153049455279145 0.158232175683807 0.153935219502775 0.164077747642365 0.157643898129226 0.164662721397269 0.178050996705802 0.163978050646324 0.170292169408163 0.155968766856267 0.159045405131239 0.165875860990048 0.154227228380369 0.155573409265016 0.153461797892839 0.170177744277774 0.156850323237159 2 2 - 6400779 6401890 6401579.909 6400414 6402020 - gene protein_coding_gene FALSE TRUE AT2G14880.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G34290.1); similar to Os03g0761000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051349.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.199692625100372 -1.94708207873141 0.077789288149987 1 1.01762012337162 15.5374369446461 -0.199692625100372 0.103690735620050
AT2G15440_at 2.27640769348595 2.13279474376634 1.95709541515740 2.46071205319941 2.12594271539149 1.92014654882618 2.18193357279453 2.79423342331556 2.51737446086525 2.76513560196826 1.73841906340767 2.32537474990828 2.21182490018280 2.56484184566021 2.3854835529707 2.14664941000628 3.04174578226048 2.34119580769224 2.45047732997448 0.194665873259312 0.189149788653622 0.201252015100470 0.190960924423433 0.196475014858387 0.19244314227388 0.197925095262895 0.192859846493971 0.189554930105325 0.190984802778693 0.202617248174041 0.190104055932613 0.193900482744724 0.192777312143308 0.188437259953423 0.197768146971193 0.198547745692319 0.196908615678179 0.192696951826348 2 2 - 6750913 6751442 6751180.182 6750695 6751912 - gene protein_coding_gene FALSE TRUE AT2G15440.1 similar to nucleic acid binding / pancreatic ribonuclease [Arabidopsis thaliana] (TAIR:AT5G67210.1); similar to Uncharacterized plant-specific domain 01627 [Medicago truncatula] (GB:ABE82263.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) -0.231794375227612 -1.94660846096926 0.0778518549783081 1 1.01694455080847 4.69221044738231 -0.231794375227612 0.143907993026461
AT2G32930_at 3.14562073469514 3.26848274670241 3.08601069622094 2.96728045617934 2.66786803986310 2.95254786455137 2.78747847594908 2.68072755083520 2.94561972560001 3.62673849092186 4.16067242133629 3.76586309538033 3.64026620048637 3.45594535624815 4.14410884940695 3.23490137494609 3.71507701814611 2.99921652236264 3.15128016239722 0.238653879883195 0.233437738792089 0.239771503480025 0.238852747701095 0.238424723585929 0.24186536119576 0.240048551269432 0.241587575686245 0.238411766561672 0.238113847836741 0.238005951400320 0.236119717414919 0.235484195840369 0.241156185495315 0.243331325293009 0.249112934416214 0.238010557490117 0.245681574214834 0.236001810479312 2 2|0 -|/ 13973148 13973765 13973407 13973067 13975496 - gene protein_coding_gene FALSE TRUE AT2G32930.1 ZFN2 (ZINC FINGER PROTEIN 2); nucleic acid binding Encodes a zinc finger protein. Identical to Zinc finger CCCH domain-containing protein ZFN2 (ZFN2) [Arabidopsis Thaliana] (GB:O48772); similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G04990.1); similar to Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] (GB:ABD28369.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.173071474487161 1.94657331077007 0.0778565003248011 1 1.01689441509785 6.38486164450565 0.173071474487161 0.0603537429076633
AT1G66810_at 1.60091986715835 2.01214325941891 1.78039340156574 2.07151211602208 2.30252999729139 1.97439535790501 2.17500363508188 2.32647660434847 1.6191842206459 2.17183171141554 2.14472102796668 2.56825170118516 2.006824029566 2.20287816043749 2.07744945863777 2.53651696093159 2.44729623797910 2.28083056561163 1.85552419746743 0.230622154175386 0.227546572422843 0.236278299411988 0.218540019010852 0.220108122674602 0.231352774597076 0.22528961541278 0.222376128535573 0.225671642836345 0.220416038959508 0.220893754316441 0.221924077671323 0.220057724532663 0.227068284210480 0.220686925996130 0.21760360710007 0.229185350958819 0.227299171654748 0.21760360710007 1 1|0 -|/ 24931309 24931907 24931587.778 24931276 24932466 - gene protein_coding_gene FALSE TRUE AT1G66810.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G68200.1); similar to Os01g0645000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043700.1); similar to Os05g0576300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056400.1); similar to Zinc finger C-x8-C-x5-C-x3-H type family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95487.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.202243925653644 1.94620250369829 0.0779055207759983 1 1.01636554656799 4.11305981033184 0.202243925653644 0.107303825868559
AT1G66800_at 1.71824274572102 1.37378205021234 2.06798336123674 1.68473319226795 1.76558304692344 1.60187196581315 1.62780034234816 1.19763728363460 2.05428204150844 1.48414340891051 1.58410707329518 1.62552736550524 1.88665634943272 2.09038415451515 2.02484680085203 1.76727594906471 2.45388686661904 1.59657498782156 1.73043286044608 0.197885153060350 0.209946924571390 0.203550595778368 0.202385855237401 0.211011007109311 0.202975173627843 0.205189827691597 0.200373531249037 0.203886858692313 0.217714209177338 0.206304194284221 0.204118155548406 0.203885761086594 0.199157774111892 0.211496444947257 0.201681598108217 0.201195326076512 0.205895900233821 0.203340983784172 1 1 + 24929152 24929859 24929472.545 24928476 24930028 + gene protein_coding_gene FALSE TRUE AT1G66800.1 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09490.1); similar to cinnamyl alcohol dehydrogenase [Quercus ilex] (GB:CAJ43901.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.211524312923907 1.94546100987401 0.0780036317483111 1 1.01530811240721 3.44717602202462 0.211524312923907 0.11956755343191
AT4G26310_at 5.12118259648686 5.86181413734272 5.6149351963642 5.69998269280184 5.85295600682306 5.21530644944675 6.03661962805915 5.92300271436453 5.19779674240691 5.55336189858056 5.43311871204826 4.88974648485736 5.13856526873165 5.11954455870149 4.96769705255781 5.12720498433047 4.48254407717032 4.8160153831820 5.35480141827824 0.233072496922287 0.229824435987667 0.231431704750790 0.234671050625017 0.230876837770583 0.229938267493225 0.226650513719047 0.226653800887291 0.229703001703778 0.230216473768751 0.229055898617094 0.226650513719047 0.231093047870537 0.235040606500247 0.231462140767691 0.229731458463071 0.24259400404198 0.241618159401103 0.232108287652384 4 4|0 -|/ 13314171 13315858 13314765.667 13313779 13316125 - gene protein_coding_gene FALSE TRUE AT4G26310.1 elongation factor P (EF-P) family protein similar to elongation factor P (EF-P) family protein [Arabidopsis thaliana] (TAIR:AT3G08740.1); similar to putative translation elongation factor P [Oryza sativa (japonica cultivar-group)] (GB:AAP21425.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Elongation factor, KOW-like; (InterPro:IPR013185); contains InterPro domain Elongation factor P/YeiP; (InterPro:IPR001059); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.255854235297751 -1.94505478004384 0.0780574308021171 1 1.01472886789329 10.8484538868541 -0.255854235297751 0.170901790497650
AT1G33820_at 1.68881260962388 1.51295674816724 1.87842738394274 2.29032187160262 1.56865731357449 2.11745646978279 1.05989116238838 1.52741550763146 2.15901132942553 1.84085134060882 2.05154086912946 1.55227940517013 1.88211459196040 1.69957367264448 1.66137634553626 1.61011077997675 1.81621846826974 2.09216530811522 1.53138938789553 0.174630722948245 0.170354090247561 0.169552393222138 0.172170387382712 0.174031666977654 0.172726953581944 0.172299752647828 0.166933637919302 0.173691641562603 0.169612636951642 0.181749041983627 0.175419099296100 0.166933637919302 0.172487123678117 0.167267168931640 0.168814622753981 0.170353218647038 0.166933637919302 0.174202716815904 1 1|0 -|/ 12278442 12279402 12278866.5 12278418 12279431 - gene protein_coding_gene FALSE TRUE AT1G33820.1 unknown protein 0.234184248448298 1.94503395909805 0.0780601891523841 1 1.01469918065208 3.52520394137767 0.234184248448298 0.146876610120310
AT1G74150_at 1.9474304241562 2.44470851027764 1.99946096936275 2.22784351953414 1.86667713753905 2.03479452886970 1.88199101055596 2.24206945632563 2.47089762724942 2.64772478447481 2.15842846241249 2.15502682890873 2.33410741954046 1.92467272197899 2.12164603172335 2.35398000280535 1.81658088063714 2.50897638574511 2.36276737438330 0.178315539184778 0.179487123876281 0.175032328195472 0.175036670852424 0.173486924995070 0.178913123429749 0.176815483917410 0.181229510831574 0.189112029719219 0.175615585724626 0.172005634513601 0.1814509566105 0.181546679166936 0.178554572625037 0.176146267619476 0.175795110752795 0.184002158922591 0.175609993826577 0.174447079518573 1 1 + 27886451 27887047 27886759 27884189 27887157 + gene protein_coding_gene FALSE TRUE AT1G74150.1 similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18610.1); similar to hypothetical protein DDBDRAFT_0191741 [Dictyostelium discoideum AX4] (GB:XP_629287.1); similar to Os01g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042819.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.209487532576337 -1.94493628728227 0.0780731298822149 1 1.01455991856612 4.4133589131217 -0.209487532576337 0.117034609466178
AT3G09050_at 6.77413851312646 6.87403817586066 5.73612600126816 5.70674706172209 6.81939947046124 6.51017787207208 6.84496818715875 6.76199758064692 6.25552681555603 6.42087445805231 6.63442966311826 6.99513960846234 6.08270274922338 6.54731595689 7.72610017097425 6.60340885035679 6.22575733469508 5.86705361861682 6.2487903800687 0.216712652722071 0.212382653567727 0.212382653567727 0.212382653567727 0.218119859716198 0.223048728728696 0.218330127648127 0.228579721428365 0.226151125553392 0.213774748531554 0.225779368474109 0.212382653567727 0.213962541270814 0.214520693387509 0.222423134296715 0.212382653567727 0.220564669307901 0.219357449589032 0.220501554679546 3 3|0 +|/ 2765047 2765836 2765342.3 2764656 2766149 + gene protein_coding_gene FALSE TRUE AT3G09050.1 similar to Os01g0853000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044830.1) -0.171915868333768 -1.94482852302204 0.0780874100910606 1 1.01440627003589 12.9502669637568 -0.171915868333768 0.0582619266742886
AT2G19050_at 1.5939890851323 1.37744814014668 1.77043785736098 1.54909117474614 1.53482289308801 1.51378932687669 1.90175503690174 1.39515442044316 2.02288945319643 1.83579423364767 1.76507303284297 1.10607260757353 1.30136284592674 1.76031451541048 1.58483117341549 1.35722952464042 1.94422136587649 1.72158175876014 2.11177775205284 0.220769669719759 0.231128407290236 0.224707589251283 0.223492605743257 0.230395379888008 0.220318316648096 0.224465661546588 0.230958809083559 0.219372157055893 0.226197751218101 0.228329562953214 0.220585046410691 0.221948783674346 0.219372157055893 0.224724553922108 0.219372157055893 0.22438462542424 0.226992324876731 0.225471702684909 2 2 + 8261673 8262551 8262134.727 8260498 8262616 + gene protein_coding_gene FALSE TRUE AT2G19050.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G19060.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE80632.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.198809658773939 -1.94463399918045 0.078113193247426 1 1.01412893048133 3.35843082484767 -0.198809658773939 0.102814123569145
AT4G30460_at 3.21134211718867 3.1881222770026 3.34027938748216 3.37542343527111 3.51721613264576 3.00811390010893 3.67115693356124 3.78760188094128 4.46136108864302 3.65428311755205 4.52147258027100 4.24606029084032 4.54255657588571 5.49576697298663 4.93829847273952 4.9060901702635 4.9650212949502 3.72350434306423 4.2812840505418 0.238183687935166 0.236290857706676 0.250478358862476 0.237210971774062 0.241185160354628 0.235883995591231 0.23573178910468 0.236630521447406 0.23588121941354 0.244879456069219 0.233146437852276 0.232625656808192 0.248456321693388 0.232625656808192 0.232625656808192 0.232625656808192 0.244272126375261 0.238507264915138 0.239691677276899 4 4 - 14889387 14889708 14889537.091 14888986 14889808 - gene protein_coding_gene FALSE TRUE AT4G30460.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30450.1); similar to cell-wall protein [Platanus x acerifolia] (GB:CAJ91128.1); similar to Os09g0425200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063219.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952) 0.190369665208199 1.94413672247038 0.0781791407080705 1 1.01342000027598 7.78723488629393 0.190369665208199 0.0906711937040323
AT1G49570_at 1.22138693109196 1.22193922130393 1.27471433666011 1.52005325456494 1.31193628925441 1.19040875415289 0.867271574669061 1.29423205755095 1.16353605581794 1.01117054418625 1.41413317354963 1.07853947325254 1.52957598518095 0.918212954857138 0.955907624944412 1.02373582688667 1.44962981791472 1.68695633645251 0.984958899610864 0.204493521528678 0.203554067950847 0.203801851368720 0.206386127249069 0.200223517150317 0.201703433744592 0.202503181491461 0.1995023253093 0.206081455279666 0.203428040416545 0.205167491903833 0.204148494432682 0.1995023253093 0.200958666142426 0.203198823667771 0.201510231315836 0.205474806949897 0.211973940374554 0.216621088291533 1 1 + 18351669 18352265 18351982.818 18350704 18352619 + gene protein_coding_gene FALSE TRUE AT1G49570.1 peroxidase, putative Identical to Peroxidase 10 precursor (EC 1.11.1.7) (Atperox P10) (ATP5a) (PER10) [Arabidopsis Thaliana] (GB:Q9FX85;GB:Q96513); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G06730.1); similar to bacterial-induced peroxidase precursor [Gossypium hirsutum] (GB:AAD43561.1); similar to Peroxidase A2 (GB:P80679); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.188467639214457 1.94407577863925 0.0781872264650706 1 1.01333312264332 2.39289691857345 0.188467639214457 0.0877739814990698
AT1G24610_at 7.15728666128625 7.31629630155293 6.66838858767908 6.58093456723412 7.05608278890173 6.78231285496591 7.5628052213119 7.41154669094735 6.89381132020445 7.63178653975252 7.4775389732595 7.96560502561711 7.10843818145668 7.75371294550167 7.85886854188662 7.55738914533031 7.08182252512969 7.32650062767639 7.29651124274533 0.186285778593729 0.176565788664867 0.191092940906043 0.192895301768146 0.179216454190420 0.184243563013624 0.180056425676167 0.174858610180548 0.190847717672412 0.187912568906481 0.18521555687617 0.177693356621126 0.175730570955157 0.183595056481797 0.190068783301812 0.182921041113132 0.207723532379782 0.181144700834730 0.187464146131039 1 1 - 8720892 8721441 8721155.727 8720637 8722732 - gene protein_coding_gene FALSE TRUE AT1G24610.1 SET domain-containing protein similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to Os02g0733800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048036.1); similar to N-methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL58003.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.173927945457295 -1.94388561994962 0.0782124608670175 1 1.01306205218396 14.4620921408847 -0.173927945457295 0.0625782010338164
AT1G19850_at 3.15371376489593 2.27216031795983 2.34223993382012 1.94855654284408 1.94256183145672 2.25121802208142 2.81907558181891 2.67200907797717 2.60238564631692 3.39506758815333 2.87837908603920 3.45716902219826 2.21480910729343 3.37699230614289 3.53450441901388 2.70063048307243 2.26504976087955 2.90923488846793 2.49833184112964 0.218714354865201 0.216642246525658 0.216987413200915 0.215631083078029 0.222691780653370 0.217842273553033 0.214250730376386 0.214655692455606 0.219021124903849 0.217504793722888 0.213037313980299 0.219143063969923 0.217946912670341 0.216105261102876 0.228260137769122 0.215193650351406 0.216293320083372 0.215454272445991 0.218770668805544 1 1 + 6890389 6891131 6890636.455 6886870 6891365 + gene protein_coding_gene FALSE TRUE AT1G19850.1 MP (MONOPTEROS); transcription factor Encodes a transcription factor (IAA24) mediating embryo axis formation and vascular development. Similar to AUXIN RESPONSIVE FACTOR 1 (ARF1) shown to bind to auxin responsive elements (AREs), and to the maize transcriptional activator VIVIPAROUS 1( VP1). In situ hybridization shows expression in provascular tissue of embryos, the emerging shoot primordia, then is restricted to provascular tissue, and in the root central vascular cylinder. Identical to Auxin response factor 5 (Transcription factor MONOPTEROS) (Auxin- responsive protein IAA24) (ARF5) [Arabidopsis Thaliana] (GB:P93024;GB:O64965;GB:Q9FXI3); similar to ARF6 (AUXIN RESPONSE FACTOR 6) [Arabidopsis thaliana] (TAIR:AT1G30330.2); similar to hypothetical transcription factor [Prunus persica] (GB:AAO14628.1); similar to putative auxin response factor 7a [Oryza sativa (japonica cultivar-group)] (GB:BAD54030.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.261463913753612 -1.94264715177451 0.0783769928948962 1 1.01129690329283 5.29970413044264 -0.261463913753612 0.177245514209463
AT2G07040_at 2.14924812093328 1.99182651252204 2.41730329039501 2.70210499494704 1.94369849237342 2.43037936398426 1.97569542450999 1.93945128619754 2.73311159094832 2.15059499442574 2.85998929126221 2.06918781665144 2.03614148596222 2.52741311670681 2.72236978331414 2.35907669357396 2.54650862921421 2.68266392048356 2.43452822665773 0.189612039142058 0.185256178335374 0.194981658639675 0.198173295374423 0.188186491812678 0.194398132267961 0.188975730884163 0.187474844749319 0.191754062445923 0.189681014575781 0.198341376522657 0.193294935811167 0.187757821927017 0.184769321346181 0.184702641954850 0.18812861803178 0.187763713986355 0.186013790468689 0.192281082186942 2 2 + 2918165 2918710 2918372.364 2916535 2918939 + gene protein_coding_gene FALSE TRUE AT2G07040.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G35390.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.197661718759847 1.94253765746881 0.0783915547969345 1 1.01114086816682 4.65112865881115 0.197661718759847 0.101508838948842
AT1G72080_at 2.13242960757643 2.43325112313885 2.32551926646642 2.14101645220804 1.83997677419222 2.6393042645959 1.95109636264336 1.92643805414567 2.92255005489927 2.83311017703864 2.58161137357137 1.88355624693161 2.27368449053986 2.48284097578991 2.42771039674973 2.35024905665808 2.33089887993692 2.68092542792007 3.17700287411581 0.200173013895794 0.203758535645238 0.203828381642381 0.20602417830505 0.199353242396834 0.200334846209743 0.205911671763335 0.200884089547872 0.211507537590615 0.199897681073046 0.199353242396834 0.201472533509716 0.203401251125742 0.202721469483368 0.208592931664810 0.203460715690239 0.209902644479608 0.211274853423952 0.203014930883180 1 1 - 27124083 27125246 27124867.273 27124069 27126423 - gene protein_coding_gene FALSE TRUE AT1G72080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19950.3); similar to hypothetical protein DDBDRAFT_0205563 [Dictyostelium discoideum AX4] (GB:XP_640657.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.237734680091405 -1.94253312863788 0.0783921571507597 1 1.01113441442790 4.85062347546924 -0.237734680091405 0.151268718113082
AT4G38840_at 10.2202714669444 10.5748980382601 10.4917569191775 10.7893706344134 11.4108768224851 11.1298414475822 11.0888266651856 11.2526479191154 11.0076872715346 11.1652309026877 11.4116354251423 11.3759310904837 11.5472608628099 11.3218784835137 11.3299294886678 11.5862907123032 11.5167835023579 11.2584791733593 11.4257826060421 0.0896407740148534 0.0866063649449579 0.0891620763392183 0.088207699913401 0.0921416108006956 0.0906433240422834 0.0866063649449579 0.0925121770801385 0.101556539219937 0.0866063649449579 0.089680639855848 0.0877140332044768 0.0888335732758905 0.0924589382425115 0.0885724137349743 0.0874614389906362 0.0893063014133174 0.0922927528199295 0.0866063649449579 4 4 - 18125174 18125430 18125317.091 18124972 18125553 - gene protein_coding_gene FALSE TRUE AT4G38840.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.195128549556561 1.94249710977444 0.0783969479661563 1 1.01108308654951 22.1788564986877 0.195128549556561 0.097917780910831
AT4G34540_at 5.06968057270712 5.11699826986945 5.43492060025734 4.97389728440511 5.30281099589794 5.31107970739116 5.36064127285779 5.36406479645166 4.6654129972884 4.23040910333049 4.40299398267607 4.2560811786874 4.6857406837851 4.93298426513743 4.8660930918938 4.63149357552775 5.14929867589866 4.64165111437331 4.1737991298996 0.246091895600515 0.235846174446655 0.244499096398932 0.241776639204123 0.240841827393537 0.247133407546286 0.247557732841499 0.237905346912113 0.268119415938147 0.238508188311245 0.239383201437785 0.237502661548290 0.234887366654265 0.254044661653059 0.247776898303135 0.241656100197153 0.240801750332846 0.233848605762591 0.235997794912597 4 4 + 16501187 16501903 16501528.455 16498396 16502179 + gene protein_coding_gene FALSE TRUE AT4G34540.1 isoflavone reductase family protein encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. similar to isoflavone reductase, putative [Arabidopsis thaliana] (TAIR:AT1G75280.1); similar to NmrA-like [Medicago truncatula] (GB:ABE85942.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) 0.183541289920497 1.94209644183318 0.0784502585413224 1 1.01051215161956 9.76792792806483 0.183541289920497 0.0802163070944793
AT4G01890_at 2.09839667056204 2.20363716176821 1.71586858365691 2.50643382072915 1.77204771943641 1.77215988561844 2.19306271165881 2.26656992461859 2.1936321695518 2.15547624438311 1.49214272317554 1.92591918464878 1.76069673201788 1.84520601161748 2.00764954310594 2.02313102747042 2.19648257285457 1.77005359698618 1.89755944237076 0.223394280303944 0.219776148201626 0.229864980640001 0.22188111399227 0.224824057282575 0.228710941171901 0.223225160947181 0.22076131344079 0.222879726904383 0.224130287928998 0.219776148201626 0.224009120809022 0.233535732632356 0.224406263446776 0.219776148201626 0.219776148201626 0.229014029392304 0.223739421840052 0.221057433299086 4 4 + 817755 818372 818121.273 816210 818428 + gene protein_coding_gene FALSE TRUE AT4G01890.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to Ribosome-binding factor A; Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE78820.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.226675779787821 -1.94172083011597 0.0785002658350564 1 1.00997696741054 4.04596345613265 -0.226675779787821 0.13860287993171
AT2G35510_at 7.61933525101195 7.40244617980957 7.82717944402595 7.55671501406576 7.81481556382992 7.47241013071576 7.25842220899394 6.75018162417293 5.8294456177069 6.56935704144101 6.43285924387847 6.4994837544229 6.35385471833617 6.32231178878081 6.48446729068207 6.53803309200568 6.45623841406572 6.20929575829772 6.79062914976507 0.180788795633471 0.184088052589467 0.183709577202100 0.180715806435997 0.183099033455984 0.192377925669735 0.180715806435997 0.184963616207992 0.210388365376177 0.183812282634582 0.188256968858493 0.187829749236456 0.186755843939702 0.192535654164324 0.183787277228192 0.181435669700267 0.198345343665770 0.196109926133653 0.189130280884087 2 2|0 -|/ 14924224 14924984 14924613.4 14923802 14927456 - gene protein_coding_gene FALSE TRUE AT2G35510.1 SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to RCD1 (RADICAL-INDUCED CELL DEATH1) [Arabidopsis thaliana] (TAIR:AT1G32230.2); similar to Os10g0577800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065494.1); similar to putative CEO protein (alternative splicing products) [Oryza sativa (japonica cultivar-group)] (GB:AAO66528.1); contains InterPro domain WWE; (InterPro:IPR004170); contains InterPro domain PARP, catalytic; (InterPro:IPR012317); contains InterPro domain Poly(ADP-ribose) polymerase, catalytic region; (InterPro:IPR001290) 0.212887230041642 1.94146307981813 0.0785345986926252 1 1.00960974225072 13.8669608156764 0.212887230041642 0.121845950301894
AT4G19160_at 9.0615706645384 8.75273138034704 8.61888898915957 8.43892682800827 9.94088697595649 8.96889249372586 9.39117664000412 8.63367974567676 9.47236652933162 9.19821110627468 8.87102824854478 8.553754606433 8.62694587783905 8.64071393009432 8.72987024024845 8.78044482984712 8.45317475036478 8.97417536916861 9.36734701591354 0.124553545139696 0.122463174974305 0.126891007811082 0.123560183999688 0.127117987265264 0.127754276409226 0.127296481118292 0.123948896078377 0.125867959312320 0.125669645237461 0.116274979306267 0.122572320120919 0.124504912866034 0.132239235370813 0.122977628246421 0.121293109452038 0.137738227749640 0.128632072273783 0.125095574999761 4 4|0 +|/ 10479207 10479900 10479483.7 10477307 10480150 + gene protein_coding_gene FALSE TRUE AT4G19160.1|AT4G19160.2|AT4G19160.3 binding similar to similar to Uncharacterized conserved protein [Crocosphaera watsonii WH 8501] (GB:ZP_00518391.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to similar to Uncharacterized conserved protein [Crocosphaera watsonii WH 8501] (GB:ZP_00518391.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.30505109410073 -1.94135181201488 0.0785494240937973 1 1.00945122199923 18.0007133973808 -0.30505109410073 0.222046256471808
AT1G63910_at 0.686242795530707 1.02381786629471 1.73779588604952 1.38472694458581 1.17868689317047 1.09169276556134 0.75071220728575 0.828008540688154 1.14224794642999 0.883534113914142 0.767424366272273 0.551529722766009 0.587341596544618 1.11058997881170 0.627354451610295 0.567538897422527 1.65411809181844 0.368321637264742 0.764557120886524 0.205408388783922 0.211736667325724 0.213945349634367 0.207855327203995 0.205408388783922 0.2086431718004 0.205408388783922 0.209051915648566 0.216175931634765 0.209821336729782 0.207514776558905 0.208993853121894 0.227315777708788 0.208674828835624 0.214047990758378 0.210332046169246 0.228785459075966 0.216816168808563 0.219532808061537 1 1 - 23723653 23724145 23723835.182 23723446 23725437 - gene protein_coding_gene FALSE TRUE AT1G63910.1 ATMYB103 (myb domain protein 103); DNA binding / transcription factor member of MYB3R- and R2R3- type MYB- encoding genes similar to MYB26 (myb domain protein 26) [Arabidopsis thaliana] (TAIR:AT3G13890.2); similar to transcription factor [Solanum lycopersicum] (GB:CAA64615.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.187597276147780 1.94090228616873 0.0786093456849591 1 1.00881083498153 1.93990568900783 0.187597276147780 0.0868998620460483
AT1G63020_at 2.96783411377638 3.20658439915839 3.50909017996798 3.73080521110212 2.99486321789625 2.85011126759527 3.86079576733163 4.20062749555466 3.14832195402116 3.27157864265406 3.55198713085917 3.45508290718025 3.73263056845157 3.92182828158052 3.33061362530304 4.39350897871085 4.01868786620152 3.87392575764058 2.95209558587463 0.209667835481753 0.220924599042028 0.211095079971838 0.209601371151738 0.209963547094777 0.21376084617417 0.222477225238803 0.217136889042866 0.226107394685095 0.211663780970816 0.216393783464072 0.210946629687356 0.214102112359118 0.213371351123445 0.209601371151738 0.210105089935448 0.226253031649013 0.212394751944758 0.222651314264729 1 0|1 /|- 23359010 23359617 23359282.125 23358682 23366229 - gene protein_coding_gene FALSE TRUE AT1G63020.1 NRPD1a (nuclear RNA polymerase D 1a); DNA binding / DNA-directed RNA polymerase Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for posttranscriptional gene silencing. similar to NRPD1b (nuclear RNA polymerase D 1b), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G40030.1); similar to RNA polymerase Rpb1, domain 4 [Medicago truncatula] (GB:ABE90540.1); similar to RNA polymerase IV largest subunit [Antirrhinum majus] (GB:AAY89361.1); similar to RNA polymerase IV largest subunit [Lycopersicon esculentum] (GB:AAY89360.1); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) 0.186520718579731 1.94072627645846 0.0786328192542746 1 1.00856011212941 6.8694798900516 0.186520718579731 0.0852367539329417
AT1G60960_at 5.09455275881489 6.03317010449846 5.95006313502312 6.01428013415989 6.23566766214512 6.13323461358949 5.65964482588073 5.8027821689315 5.37949409491272 5.53985611374659 4.72101253061923 5.29503483443736 5.90777761776258 5.93599155074249 4.89244865241562 6.43860297112618 6.12115407331185 5.31268383233474 5.61994747506264 0.220013065000440 0.216851019220366 0.218049382786604 0.213932429195346 0.211133429887851 0.225578898060675 0.211133429887851 0.22068016913892 0.227226682910373 0.216675421733684 0.217889748527226 0.213136801092507 0.216929746391926 0.225819394087389 0.221485563486878 0.211133429887851 0.228401896134512 0.215310995979422 0.217346855881861 1 1 - 22449091 22449716 22449364.818 22448978 22450879 - gene protein_coding_gene FALSE TRUE AT1G60960.1 IRT3 (Iron regulated transporter 3); cation transporter/ metal ion transporter member of Fe(II) transporter isolog family Identical to Fe(II) transport protein 3, chloroplast precursor (Iron-regulated transporter 3) (IRT3) [Arabidopsis Thaliana] (GB:Q8LE59;GB:Q8W244;GB:Q9C957); similar to ZIP4 (ZINC TRANSPORTER 4 PRECURSOR), cation transporter [Arabidopsis thaliana] (TAIR:AT1G10970.1); similar to Zn/Cd transporter homolog [Thlaspi japonicum] (GB:BAD13506.1); similar to putative Zn transporter ZNT4 [Thlaspi caerulescens] (GB:AAG44953.1); similar to ZIP-like zinc transporter [Thlaspi caerulescens] (GB:AAK69430.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.250381475817224 1.94032195746711 0.0786867659714427 1 1.00798420418946 11.4110181682559 0.250381475817224 0.165636654382374
AT2G43610_at 0.87393932379962 0.468449641894139 0.580056288726362 0.5987532009404 0.305700770258087 0.268721649999003 1.09690962581599 0.731310405246461 0.712993786241824 0.875412776532355 1.04216131460509 0.830500473983668 0.483780564441991 0.44576954495958 1.2251983648005 0.42713821714639 0.941744561386405 0.811435990787155 0.832850602442443 0.197478668850358 0.194619931533353 0.200573996652797 0.199780992236588 0.198971582587039 0.205634121361935 0.204016912058199 0.194898766010572 0.204201797534342 0.204159719159856 0.195864527780946 0.194107546363848 0.193305330175756 0.203754510876749 0.194483303300097 0.194312254684915 0.201847301401467 0.193913132371126 0.195235713112943 2 2 - 18095138 18095990 18095557.545 18094917 18096301 - gene protein_coding_gene FALSE TRUE AT2G43610.1 glycoside hydrolase family 19 protein similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43620.1); similar to Basic endochitinase CHB4 precursor (GB:Q06209); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.192731932216558 -1.94029980196256 0.0786897230869579 1 1.00795264762491 1.40700603871137 -0.192731932216558 0.094754611445812
AT1G17340_at 4.91248043148842 5.22800735847954 4.67962435187407 5.52722272566936 5.05693041291034 4.76032188354349 4.18992542457464 4.1622837008223 5.31767171968141 4.48642661148087 5.03328514301184 4.74644540041049 4.92334305357982 5.33831556043111 4.79886311424659 5.47289153668287 4.76389574987649 4.61905894870591 4.73356476487547 0.191192350537917 0.191192350537917 0.200888817105591 0.191192350537917 0.203611887544617 0.203354424639722 0.191952504238613 0.191916813732119 0.206553642834272 0.199572737547269 0.198241318644171 0.194053737281063 0.194304919050250 0.192960147996806 0.199549204731786 0.191874635401618 0.199126814501746 0.206500705202196 0.191747136055579 1 1|0 +|/ 5937650 5938428 5937984 5933874 5938754 + gene protein_coding_gene FALSE TRUE AT1G17340.1 phosphoinositide phosphatase family protein similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G14205.1); similar to Os03g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049173.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.249487614673489 1.93942207250266 0.0788069574447213 1 1.00670260529759 9.71854954219397 0.249487614673489 0.164785930335844
AT4G36000_at 1.07479022910768 0.86445739551387 1.07690070657102 1.22420598155222 1.40665338972220 1.11911849679996 0.745980232850644 0.888333275939486 1.59945147754871 1.31372665126540 1.13091906543970 1.26766568773767 1.54632133060319 1.34377205148026 1.24765081090065 1.47761574713178 1.34181839044835 1.47986681618373 1.0222059682225 0.208561326283449 0.207761598707358 0.212837788230819 0.209424720639511 0.2133405927245 0.207761598707358 0.209387836770282 0.215335329807119 0.21807184122277 0.213095235075758 0.212691126641447 0.211802925608722 0.219336175009923 0.210441979650515 0.222143808969588 0.215265028095915 0.209398961174412 0.207761598707358 0.213704122212299 4 0|4 /|- 17037959 17038487 17038226.333 17037872 17038716 - gene protein_coding_gene FALSE TRUE AT4G36000.1 pathogenesis-related thaumatin family protein similar to thaumatin, putative [Arabidopsis thaliana] (TAIR:AT4G38660.1); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE92056.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.177994199393446 1.93915673787898 0.0788424288793866 1 1.00632477045263 2.38317918175857 0.177994199393446 0.0711167184906174
AT3G27470_at 4.11831612606814 3.70862613546901 4.17106809260399 3.91483899997037 3.94067401241382 3.46149236475442 3.8187516027484 3.73181380514275 3.34541064269143 3.48473281130665 3.67244218815176 3.92766903851597 3.98129602042081 4.00484707279541 3.87042417480188 3.96419738651628 4.08523775379717 3.79111714549118 3.72910996510384 0.206272902399896 0.203154296646733 0.197229423009837 0.197229423009837 0.197229423009837 0.202875876933342 0.197229423009837 0.204727313655982 0.202306836210044 0.202634134865457 0.197664761631923 0.197229423009837 0.222897644422116 0.208676827613160 0.199823395725324 0.197229423009837 0.206041660925726 0.197229423009837 0.209433107908571 3 3|0 +|/ 10166250 10167755 10166731 10164286 10168140 + gene protein_coding_gene FALSE TRUE AT3G27470.1|AT3G27470.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67850.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.210022078969619 1.93770177644557 0.0790371998207076 1 1.00425331673633 7.57415013602734 0.210022078969619 0.118725144183483
AT4G32160_at 5.35097037748893 6.04792720420318 6.22735123632385 6.15567042281146 6.22174895987352 6.18810597158602 5.50052283268328 5.52733723648027 5.09749658774355 5.35550027373055 5.21991355345787 5.1275340977358 5.19280841302849 5.02499567592304 5.07410759870111 5.60943663420251 5.11288086515337 5.20022401726394 5.63435776903 0.198960500643717 0.208393162343425 0.202775606837135 0.202113630257130 0.216759803775103 0.211128132526764 0.216299706912327 0.215690136892399 0.206565855086984 0.198676042801879 0.196416382492558 0.197760506554868 0.198979688027818 0.200992791789837 0.202273203756439 0.195543108299943 0.207741644976909 0.196791387600341 0.199169675370134 4 4|0 +|/ 15532039 15532799 15532442.9 15528811 15533106 + gene protein_coding_gene FALSE TRUE AT4G32160.1 phox (PX) domain-containing protein similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25350.1); similar to Phox-like [Medicago truncatula] (GB:ABE81779.1); contains InterPro domain Phox-like; (InterPro:IPR001683); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.212157899183346 1.93747819506361 0.0790671694676745 1 1.00393506042835 11.1812988553986 0.212157899183346 0.121476216516244
AT2G31810_at 9.40076152136395 9.6287474099648 9.0041377607177 8.91596808107116 9.79417751793083 9.16692654325422 8.81070202654619 8.63908277067071 9.43544060280775 8.83814839809444 8.75202837227478 9.05453766453812 8.67678810977966 8.63164734462756 8.6039345427737 9.06217853110514 8.11810577199909 8.68844379263475 9.38997646889348 0.161429831790849 0.163491523200498 0.159461366705045 0.16334698660507 0.167715487434978 0.173359136313636 0.158488494750544 0.164580999537182 0.174383924671118 0.155944663662346 0.165103252667799 0.156833711287 0.159328009706751 0.174219401759561 0.175924290096359 0.155460741628872 0.205365191488385 0.168689656828925 0.155367009843139 2 2 + 13533509 13535298 13534398.2 13531298 13535634 + gene protein_coding_gene FALSE TRUE AT2G31810.1|AT2G31810.2|AT2G31810.3 acetolactate synthase small subunit, putative similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT5G16290.2); similar to acetolactate synthase, small subunit, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96859.1); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912)|similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT5G16290.2); similar to acetolactate synthase small subunit [Nicotiana plumba (GB:CAB56614.1); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.211125715054111 -1.93704478695423 0.079125295064156 1 1.00331817268149 18.1298862070142 -0.211125715054111 0.120226097095334
AT2G14890_at 6.82179237130915 7.49625186079947 5.0966232364612 5.47505442898372 5.55337156165325 5.96467099802859 6.68874575159193 7.83914392903857 7.72356939155312 7.31574749903888 8.98029949365671 9.50091278443117 8.69540880871702 8.51019696996751 9.71962044583977 8.56382897650175 7.7230837061497 8.64851172946436 8.27055297865406 0.203079734756993 0.197950088395824 0.202219481775832 0.204443893652398 0.208645408171019 0.211842811467126 0.207346935935103 0.193550516754647 0.215081073516170 0.196939803726893 0.194521324825716 0.195689784160573 0.198051919288954 0.209488829707349 0.204573880957893 0.195054842476923 0.202418809175931 0.197616630910168 0.201923691481307 2 2|0 +|/ 6406765 6407813 6407394.556 6406703 6408083 + gene protein_coding_gene FALSE TRUE AT2G14890.1|AT2G14890.2 AGP9 (ARABINOGALACTAN PROTEIN 9) putative proline-rich protein (At2g14890) mRNA, complete Identical to Classical arabinogalactan protein 9 precursor (AGP9) [Arabidopsis Thaliana] (GB:Q9C5S0;GB:O82327); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to proline-rich cell wall protein (GB:AAA79364.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Glutelin; (InterPro:IPR000480) -0.333138590322053 -1.93689328919437 0.079145622207624 1 1.00310255390474 14.6483015109447 -0.333138590322053 0.250223457841191
AT3G03720_at 7.23971070187036 7.55370614141516 7.4402462500896 7.86418290889988 7.97290736541278 7.26383057341295 7.42021963783723 7.31574458334913 7.12215880597349 6.7088069920817 7.13409757476219 6.75551863511776 7.08801608035483 7.52290895356711 6.87672470715924 7.35572897275117 7.10447633009743 7.07557954272877 6.83381908325598 0.195415972879906 0.188242683105506 0.196408892808722 0.194100555274296 0.196602600112171 0.203349828609954 0.197797380140474 0.1942369075852 0.196021750373190 0.188551384244209 0.182669060231538 0.182669060231538 0.193146545388742 0.198955638575737 0.188662171048769 0.182669060231538 0.205009788718394 0.191320208439988 0.197566644120010 3 3 - 925916 927201 926635.7 925619 929947 - gene protein_coding_gene FALSE TRUE AT3G03720.1 CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At3g03720) similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to CAT2 (CATIONIC AMINO ACID TRANSPORTER 2), amino acid transporter [Arabidopsis thaliana] (TAIR:AT1G58030.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABD28534.1); similar to Amino acid permease-associated re (GB:ABE92408.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99422.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.239408115399716 1.93641487339982 0.0792098452345561 1 1.00242169847796 14.5100150086214 0.239408115399716 0.154010907927275
AT4G16130_at 7.88717237301563 8.2988226989672 8.2963013988895 8.39993748174235 8.40952978738981 8.19528086698812 7.42155708453054 7.64799786753936 8.36337082597037 7.916025144817 8.10526149746371 7.66823886134353 7.81578374294823 8.2426224161343 7.63679881409531 7.93624502757314 7.7122500861835 8.23380519887047 7.87181646630834 0.136248682035518 0.137574093387068 0.132120982679451 0.132927023471959 0.131830760174148 0.134363777735912 0.127096847685346 0.130891423594104 0.134094997470964 0.133179128705289 0.127096847685346 0.127096847685346 0.139265788117287 0.129999777440938 0.137049226321386 0.129240722540658 0.144729991129177 0.127096847685346 0.135370386581886 4 4|0 +|/ 9126713 9127623 9127273.111 9120879 9127950 + gene protein_coding_gene FALSE TRUE AT4G16130.1 ARA1 (ARABINOSE SENSITIVE 1); ATP binding / galactokinase Similar to galactokinase. similar to galactokinase, putative [Arabidopsis thaliana] (TAIR:AT3G42850.1); similar to Os06g0702500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058491.1); similar to arabinose kinase-like protein [Nannochloris bacillaris] (GB:BAD42339.1); similar to Os02g0141300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045858.1); contains InterPro domain Galactokinase, glycosyltransferase N-terminal; (InterPro:IPR012369); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Galactokinase; (InterPro:IPR000705); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.189923218808606 1.93640543240459 0.0792111130896508 1 1.00240826330764 16.0542148705204 0.189923218808606 0.0911415772990528
AT1G24706_at 5.34824904809829 5.42935165333307 5.34473737551504 5.31107853554269 5.36452484771702 5.47139656386145 5.49350013833194 5.58856449510658 5.53829819848338 5.32736057767601 5.19116327606356 5.24417656802891 5.14825415862698 5.14446641528455 5.15868897648698 4.94957937722524 5.29580299580106 5.3067244694703 5.36118488270722 0.140533244353679 0.144628274894214 0.143408678940349 0.146088750158121 0.143330889684285 0.146333074636135 0.139776864639407 0.140558359567542 0.144426830703782 0.143877773092297 0.142791221838434 0.140981764504613 0.144233371085626 0.143180030031909 0.152371581297113 0.141808860930913 0.141320145800253 0.141658188338116 0.146075863713758 1 1|0 +|/ 8742197 8754985 8750314.643 8741926 8755544 + gene protein_coding_gene FALSE TRUE AT1G24706.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to F5A9.21, related [Medicago truncatula] (GB:ABE85730.1); similar to putative THO complex 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD87730.1); similar to Eukaryotic DNA topoisomerases I, dispensable insert [Medicago truncatula] (GB:ABE94293.1); contains domain THO2 PROTEIN (PTHR21597); contains domain Prion-like (SSF54098) -0.160536429861922 -1.93597115416994 0.0792694537608628 1 1.00179028728130 10.7133277901444 -0.160536429861922 0.0290450205426055
AT3G02850_at 1.66256847812158 1.34764606190533 1.24041876649807 1.25196872126304 1.05748668445061 1.22573062135956 1.54402556290289 1.21130884379743 1.39392339117370 1.65701854578949 0.992314101250648 0.956056030884987 1.17546863783431 1.34677777364846 1.35376541543976 1.33614095246274 1.49288225539803 1.27797187710951 1.04399530747543 0.183352882724789 0.179746625616083 0.184047199297364 0.179746625616083 0.188171209371542 0.180385187212379 0.179868830919686 0.182803716455283 0.183599265259558 0.179746625616083 0.189619667851377 0.182163973320595 0.185751711856948 0.181008099092979 0.18911701513146 0.182581941142394 0.192161344956856 0.179900772734019 0.190757560633865 3 3 - 619785 620403 620074.182 619685 623565 - gene protein_coding_gene FALSE TRUE AT3G02850.1 SKOR (stelar K+ outward rectifier); cyclic nucleotide binding / outward rectifier potassium channel member of Stelar K+ outward rectifying channel (SKOR) family. Mediates the delivery of K+ from stelar cells to the xylem in the roots towards the shoot. mRNA accumulation is modulated by abscisic acid. K+ gating activity is modulated by external and internal K+. Identical to Potassium channel SKOR (Stelar K(+) outward rectifying channel) (SKOR) [Arabidopsis Thaliana] (GB:Q9M8S6;GB:O82630;GB:Q9SB86); similar to GORK (GATED OUTWARDLY-RECTIFYING K+ CHANNEL), cyclic nucleotide binding / inward rectifier potassium channel/ outward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G37500.1); similar to outwardly rectifying potassium channel [Samanea saman] (GB:CAC10514.1); similar to shaker-like potassium channel [Vitis vinifera] (GB:CAD35400.1); similar to potassium channel TORK1 [Nicotiana tabacum] (GB:BAD81036.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938) -0.185521494632485 -1.93527420554943 0.0793631647133704 1 1.00079865963060 2.62084482352886 -0.185521494632485 0.0844811619541759
AT2G24320_at 1.11745466355196 1.13783264372988 1.65670563700613 1.18415962861471 1.56132463635122 1.14290371819583 1.38386839132423 1.27249175271047 1.62183279649885 0.928445394411368 1.35439227625961 1.10745413031589 1.07505839871023 1.37868362463422 1.31624818153665 1.06478338942658 1.34527909591467 1.53595284068605 0.518720259014204 0.186878736179881 0.180495729234962 0.185543973680822 0.195450186617531 0.195279881526186 0.183361435876917 0.183013379118108 0.182128812289057 0.197157699975490 0.194170599510868 0.185564670382802 0.183775047398817 0.178798247287858 0.180988608248032 0.187101915655441 0.182755231186953 0.182807991677588 0.197635287043813 0.194693429284088 2 2|0 -|/ 10352816 10353377 10353161.5 10352739 10353909 - gene protein_coding_gene FALSE TRUE AT2G24320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31020.1); similar to Os08g0161500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061050.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); similar to Os02g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048390.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.20379677554509 1.93496358301094 0.079404963771456 1 1.00035675232327 2.45470812168237 0.20379677554509 0.110970527287578
AT1G59840_at 6.29474118458412 6.71542704217322 5.55500135587998 5.44957022231168 6.79967602903807 6.22527420186226 7.01125821292115 7.18998485962417 5.93023242748494 6.34212639538613 5.69751728711171 7.09813015467634 5.93633822152915 6.91661873173686 7.04621340121985 7.24104183807025 6.45213136499845 6.51821208657051 6.48517279996825 0.278701768251440 0.267332264876713 0.280717472578923 0.270188441135942 0.266378920796688 0.286756105032534 0.268173944272144 0.269557283566340 0.269805420468897 0.269701572405781 0.275641150113709 0.26803719003325 0.271556375317633 0.270461359860333 0.273717954778428 0.268821963889189 0.282065099696068 0.272912761957319 0.273012080314357 1 1|0 +|/ 22030841 22031773 22031303.875 22030172 22033044 + gene protein_coding_gene FALSE TRUE AT1G59840.1|AT1G59840.2 similar to Os04g0650500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054091.1); similar to H0212B02.11 [Oryza sativa (indica cultivar-group)] (GB:CAJ86182.1) -0.217353763879984 -1.93474378231133 0.0794345536820679 1 1.00004407157918 12.8380096018921 -0.217353763879984 0.128337621973096
AT2G32610_at 1.32921352090399 1.45498678983467 1.64628914494530 1.81084059228496 1.48941735259046 1.24845930093630 1.12361183853146 1.81607948913915 2.32847691378535 1.97791237418833 1.54652574287669 1.53494343013512 1.73930594051345 1.39034412348931 1.45414024722962 1.47225404326974 1.94370452134780 1.88263701947757 2.22954687717293 0.193160816434420 0.197614885371975 0.197392980574159 0.202595840789506 0.197302668119969 0.192958039698516 0.197286411421218 0.193323885059631 0.197107362292970 0.192958039698516 0.192958039698516 0.206036531581455 0.202608307583003 0.194517789441808 0.198622497836027 0.202043159808598 0.199671681458233 0.195115794268505 0.195632078559308 2 2 + 13846030 13846446 13846244.455 13843311 13846590 + gene protein_coding_gene FALSE TRUE AT2G32610.1 ATCSLB01 (Cellulose synthase-like B1); transferase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLB03 (Cellulose synthase-like B3), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G32530.1); similar to ATCSLB05 (Cellulose synthase-like B5), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15290.1); similar to ATCSLB02 (Cellulose synthase-like B2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G32620.1); similar to Cellulose synthase [Medicago truncatula] (GB:ABD32407.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.220192408376426 -1.93445122801637 0.0794739536562651 1 0.999627918346188 3.38942588960810 -0.220192408376426 0.131847703766991
AT4G33640_at 10.3525044544897 10.5432680952684 10.4797694902586 10.5910756095689 10.8435092038679 10.6426267973889 10.2641995641363 10.4928755933649 10.4910856748597 10.6086414349947 10.8578471290405 10.7068321093412 10.6710314245942 10.7651227134435 10.6112954838014 10.6262287016337 10.5282161679431 10.6550673940760 10.5654713380079 0.0737754984292134 0.0700795577618685 0.0747973811237244 0.0722911968301546 0.0697094492275547 0.073668119989421 0.0724805969375425 0.0708138974595425 0.0717191176838553 0.0692034780340096 0.0702223748187257 0.0690598704012844 0.0740598609280767 0.0696954593390783 0.0725512138546526 0.0690598704012844 0.075128187107342 0.0690598704012844 0.0720714635639754 4 4|0 -|/ 16159778 16160155 16159907.1 16159551 16160330 - gene protein_coding_gene FALSE TRUE AT4G33640.1 similar to hypothetical protein MtrDRAFT_AC148971g9v1 [Medicago truncatula] (GB:ABD28547.1); similar to Os03g0690000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050950.1); contains domain SUBFAMILY NOT NAMED (PTHR22739:SF6); contains domain FAMILY NOT NAMED (PTHR22739) 0.174336169826510 1.93431537649795 0.0794922557243469 1 0.999434681405369 21.1426142459288 0.174336169826510 0.0650801247698002
AT2G44950_at 4.68423928017361 4.92121618423807 5.33402324762485 4.91220992783437 5.45237924163857 5.33544839152424 5.19239102249022 4.83612310743973 4.02273869418938 4.23807249602023 4.47325675603426 4.22501084405561 4.34656125157878 4.29833707451095 4.38103738938834 4.64158138331325 4.24893695746241 4.25972289596307 4.66736421276526 0.155349037397056 0.152999362012267 0.156001933114298 0.157552694990193 0.155450353627188 0.158074779236405 0.150889027790898 0.15157010861955 0.160902996913834 0.157830737911876 0.157649802196423 0.153005518516681 0.157520686473005 0.153477492871177 0.153543869839515 0.152569167580277 0.164050112820481 0.156324992753049 0.158287767322204 2 2|0 -|/ 18549714 18554744 18551875.588 18549369 18555666 - gene protein_coding_gene FALSE TRUE AT2G44950.1 HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / zinc ion binding The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. similar to HUB2 (HISTONE MONO-UBIQUITINATION 2), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G55255.1); similar to OSJNBb0034G17.7 [Oryza sativa (japonica cultivar-group)] (GB:CAD41603.3); similar to Zinc finger, RING-type; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE92765.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.199968285808404 1.93397636093377 0.0795379453259487 1 0.998952487347607 9.41785248538543 0.199968285808404 0.105929271796711
AT1G27435_at 7.57131866721768 8.11058576880295 7.4065824735028 7.57545511351041 7.28517485626281 7.51950652185396 7.61717479797353 8.33192702390875 8.31829541471295 8.3017162357925 8.32318407202142 8.41137438904908 8.24957532403726 8.53682731534894 8.33805901285964 8.13227665842216 7.83265475049728 8.15888009335965 8.22223623792684 0.136953860935173 0.137365305291338 0.140414379854610 0.137112853848318 0.13625867106748 0.139605518933459 0.138116277904475 0.137728947137584 0.137965170196637 0.141158886437193 0.133808975423865 0.143610600942803 0.137825720933391 0.145009405434755 0.142476346462048 0.133808975423865 0.142230509982038 0.133808975423865 0.140842494116832 1 1|0 -|/ 9527953 9528775 9528425.7 9527561 9528865 - gene protein_coding_gene FALSE TRUE AT1G27435.1 similar to Os12g0477600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066758.1) -0.246983583693953 -1.93390968850982 0.079546933726517 1 0.998857661129295 15.9415172769259 -0.246983583693953 0.162810233251927
AT3G22320_at 8.64820822917589 8.9008151057924 9.24974793099384 9.07814074220658 9.39369335852609 8.8058946597449 9.11994941935144 9.0581261671642 8.21434600594875 8.61320766715099 8.72322059143427 8.92107316618246 8.73847831690699 8.71470282063921 8.8315503966631 8.57441363190403 8.34387445962604 8.5618458366924 8.56018190091806 0.166008577423336 0.171038469013015 0.167901438836642 0.171406540562821 0.172471182322003 0.186207602835923 0.168469166237479 0.166539980184690 0.197871009031121 0.174540122611108 0.170818984511956 0.160574004638219 0.165458757580739 0.170092077749151 0.161640182440684 0.168970826082592 0.176811313443221 0.173404756306963 0.169786404410263 3 3|0 -|/ 7891064 7891993 7891390.667 7890871 7892354 - gene protein_coding_gene FALSE TRUE AT3G22320.1 ATRPABC24.3 ("Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit"); DNA binding / DNA-directed RNA polymerase RNA polymerase I, II and III 24.3 kDa subunit (AtRPABC24.3) similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT5G57980.1); similar to RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago truncatula] (GB:ABE89784.1); similar to RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago truncatula] (GB:ABE84760.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain RNA polymerase Rpb5, N-terminal; (InterPro:IPR005571) 0.206830410165166 1.93387232624522 0.0795519711082969 1 0.998804522513103 17.6011836652088 0.206830410165166 0.115128663201862
AT3G60080_at 2.96280687416049 3.20120208894201 3.23685508854270 2.84807261917495 2.47762062222385 3.22933086339268 4.00815433632398 4.84893537909224 4.30226253761553 4.08651913608425 3.90841149570057 4.36960387553023 4.72625299602246 4.56353385868134 4.21028054619776 4.50290409562607 4.24413497236742 3.7880292144307 3.81103304742119 0.223738318994448 0.220239234584765 0.236062345675557 0.225850582225118 0.23144189463636 0.229692402405013 0.220718434105058 0.224737453811174 0.224998703152831 0.219134219745529 0.217095360006492 0.230230207717250 0.227795997474788 0.218640562302924 0.217095360006492 0.217095360006492 0.231369888154246 0.217095360006492 0.219099859235842 3 3 + 22198953 22199505 22199207.455 22198284 22199771 + gene protein_coding_gene FALSE TRUE AT3G60080.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G44330.1); similar to cytokinesis negative regulator RCP1 [Nicotiana tabacum] (GB:ABJ16351.1); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.292382948258447 -1.93384384160581 0.0795558117595312 1 0.998764010434855 7.52949662841156 -0.292382948258447 0.210527605189384
AT1G55640_at 2.47405710428112 2.63578009125123 2.03950214995295 2.42359370051861 2.32753267836492 2.11079579312727 2.57695461724055 2.24355854457222 2.82187255661035 2.58869789893343 2.55227234592974 2.17979987446763 2.8738023287576 2.29843498855549 2.82018144008574 2.60336918216879 2.59093599151003 2.28380833915217 2.56637572588316 0.253960985639301 0.252058714138735 0.265805092455934 0.253173963512229 0.264784674204167 0.263134509139444 0.258180069653868 0.258036841722968 0.263879292068645 0.272139675564948 0.262526277491954 0.250900091362201 0.253889124097910 0.256039176809447 0.26192664170949 0.251465980087551 0.260601316114496 0.254195140240281 0.261803823291111 1 1 + 20797482 20797857 20797687.455 20797437 20798000 + gene protein_coding_gene FALSE TRUE AT1G55640.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT5G56230.1); similar to prenylated Rab acceptor protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAV65110.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) -0.195444003996295 -1.93338270145652 0.0796180123007696 1 0.998108193624665 4.94612564581563 -0.195444003996295 0.099684362775505
AT2G17030_at 4.36044037599909 4.64965346385348 4.75302130553979 5.44591565852273 5.95310236053317 4.46050402966461 5.08248610590554 4.44599383608167 3.71489165531874 3.90791317860152 4.29679288512425 3.90441288014751 4.24430440636108 4.61206832410736 3.91315631063257 4.3491080545505 4.25597283532782 3.80478260864198 4.07993837979859 0.244866467038622 0.246070873488009 0.251356850215655 0.256540493454178 0.252051475296198 0.264212978298618 0.256040935315733 0.243529061580480 0.242860868833789 0.246268405041474 0.246948824391127 0.250901766832789 0.242860868833789 0.242860868833789 0.247678220511645 0.242860868833789 0.254313971943737 0.248206960248567 0.248634259871685 2 2|0 +|/ 7406825 7407324 7407067 7406185 7408003 + gene protein_coding_gene FALSE TRUE AT2G17030.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G17036.1); similar to Cyclin-like F-box; Long hematopoietin receptor, gp130 family 2 [Medicago truncatula] (GB:ABE78749.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) 0.395076388321906 1.93332630160592 0.07962562284585 1 0.998027988524117 8.9306342383548 0.395076388321906 0.30941084929732
AT3G18370_at 8.90134058571043 9.02459575307912 8.85431634588392 8.88415896106436 9.22343336655352 9.00361441870198 8.18277855834274 8.18832422178891 8.38319086416572 8.3705942062881 8.49146348719983 8.70071442368976 8.29592131773008 8.43112631445296 8.07908085205768 8.30883688485723 7.77383690917394 8.31207233600425 8.4058937535861 0.140117267577319 0.136115812345308 0.140069704652886 0.135968149245135 0.144591206884656 0.139448083919960 0.137874447666353 0.137688687484564 0.160383793957052 0.135146685140936 0.135562953532574 0.13892406228228 0.147123247659487 0.141983777628666 0.139612339810961 0.134028241733709 0.149785735865367 0.145561261495152 0.140888358163415 3 3 + 6309785 6310211 6309976.455 6305981 6310626 + gene protein_coding_gene FALSE TRUE AT3G18370.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G11100.1); similar to NtermTM-C2Type3.1 protein [Physcomitrella patens] (GB:CAL64987.1); similar to Os01g0128800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041914.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.164846475476531 1.93263429162030 0.0797190569728523 1 0.99704397879981 17.1256658632201 0.164846475476531 0.0439277856463307
AT3G20620_at 4.25468836317943 4.65451710753369 4.7945178654647 4.83830603138939 5.14124827334969 4.68386375251837 5.22315561353139 4.90673941708927 3.25972860042157 4.15541120237992 3.55672233162942 3.76985757688532 4.78018996291689 4.13857086626675 3.52550099196988 4.33521013731758 4.78299406709042 4.25682995337768 4.07161996417549 0.231030239439663 0.238135402036315 0.236324625411885 0.228478565242174 0.236027094869196 0.233430629714232 0.234011274757877 0.228823375520603 0.238377174292687 0.242616943099367 0.232278416933657 0.230052382292586 0.227444788564255 0.236937960271704 0.234691723336039 0.22566362870186 0.232905074408726 0.229649746626255 0.224153318814313 3 3|0 -|/ 7198844 7199375 7199166.4 7198460 7202495 - gene protein_coding_gene FALSE TRUE AT3G20620.1 F-box family protein-related contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.209511709476587 1.93260568966185 0.0797229209518842 1 0.997003311329829 8.79820675713569 0.209511709476587 0.118779083410811
AT3G01770_at 8.27323171194122 8.14695186365225 8.31397423427032 8.2897585511299 8.9651883900153 8.67894225205668 7.1613405704582 7.17035700568375 8.74173641142632 8.58136879771312 8.27680047241015 8.22760200540215 8.31953745274355 8.1834438670027 7.72348069971196 8.5618192258156 8.55243906353255 8.20220237246023 9.05261746602634 0.162924923985938 0.164007612341475 0.165032107480058 0.163538903149144 0.163641201146155 0.169124276016828 0.160549911199446 0.171094015652596 0.159894612326620 0.158911987191144 0.16776576626617 0.170674968721751 0.166325891068788 0.175982848179113 0.175094613663185 0.166625947597463 0.164210113556198 0.159119922453013 0.158415108473386 3 3|0 -|/ 275609 276378 275900.9 275418 278792 - gene protein_coding_gene FALSE TRUE AT3G01770.1 ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10); DNA binding similar to ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G14270.1); similar to kinase-like protein [Oryza sativa] (GB:BAB41205.1); similar to Os02g0601800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047353.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.169001827715228 1.93210484729667 0.0797906103515558 1 0.99629123551397 16.6488796740377 0.169001827715228 0.0543268031232103
AT1G10290_at 6.57005323822626 6.28329093225674 6.47037839432067 6.5473312953391 6.08054323890367 6.24262018241737 6.09292876561663 5.44006616605121 5.64675811151833 5.89148673030653 6.01039626580057 6.02578401027855 5.82392477121229 6.12301739236033 5.99067100931045 5.89537181078301 6.26750504716915 5.54596370566355 5.76233444703767 0.200723764612103 0.205620523970694 0.211390130202420 0.20699769922764 0.203738319562527 0.210107721257038 0.216964101269532 0.211731477827263 0.218922202484439 0.216826433201171 0.209097891627351 0.20871269119209 0.203476026314724 0.209737064707623 0.205128513792765 0.204549682661448 0.204452674757972 0.225529069031409 0.202166200700864 1 1 + 3376257 3377092 3376832 3370560 3377465 + gene protein_coding_gene FALSE TRUE AT1G10290.1 ADL6 (DYNAMIN-LIKE PROTEIN 6) involved in trafficking from the trans-Golgi Network to the central vacuole. Identical to Dynamin-2A (EC 3.6.5.5) (Dynamin-related protein 2A) (Dynamin-like protein 6) (DRP2A) [Arabidopsis Thaliana] (GB:Q9SE83;GB:Q9SY71); similar to ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) [Arabidopsis thaliana] (TAIR:AT1G59610.1); similar to putative dynamin homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD16041.1); similar to DRP [Cucumis melo] (GB:AAU04752.1); similar to dynamin homolog [Astragalus sinicus] (GB:AAF19398.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.216051495412774 1.93101735210132 0.0799377699967992 1 0.994745362394348 12.0794960339047 0.216051495412774 0.127245539626384
AT1G09810_at 2.65421830244329 2.87767007138616 2.81616265288903 2.77264700067759 3.51065427789752 2.55953960968828 2.5851368870691 2.48793953899522 2.24015847944188 2.16693463660940 2.52862014394714 2.34286373821464 2.49064620165980 2.38543849693275 2.81106989969676 2.69428315641211 2.85312251616983 2.53533254039857 2.60466228788250 0.192037868433966 0.196720516552643 0.19556441248521 0.193589834675402 0.196784475460059 0.196837281899515 0.195162167585936 0.199792339133590 0.205660717573362 0.197977411759152 0.198591468536957 0.193289088928026 0.188536097331924 0.188536097331924 0.191601238062193 0.189550991450072 0.210554807462569 0.197399831627494 0.196014667729531 1 1 - 3181436 3182033 3181719.6 3180942 3184223 - gene protein_coding_gene FALSE TRUE AT1G09810.1 ECT11 (evolutionarily conserved C-terminal region 11) similar to ECT8 (evolutionarily conserved C-terminal region 8) [Arabidopsis thaliana] (TAIR:AT1G79270.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE79575.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.253214985341176 1.93076272020503 0.0799722630653793 1 0.99438345891742 5.24170798662588 0.253214985341176 0.170077674719924
AT1G70130_at 1.39937096694991 1.28438073896698 1.55637942718106 1.14906592696710 1.15633471656411 1.11696333902430 1.47391691704506 1.40716568001280 1.39140441177247 1.59686195699855 1.27397472042674 0.955776369217417 1.19079706686211 1.12247577131158 1.16257723412737 1.25676003197158 1.3839398549167 1.10665131143942 1.19157364855589 0.20640575900282 0.202623889117387 0.207543451362866 0.207377447703225 0.200652480720744 0.199748123999453 0.201181344230639 0.200533737735493 0.206276250006116 0.199748123999453 0.20513566885537 0.207202762141252 0.219292761455959 0.201352164769372 0.206751351461609 0.199748123999453 0.203268619363059 0.200859812941971 0.199748123999453 1 1 - 26413408 26414006 26413695.636 26413406 26415464 - gene protein_coding_gene FALSE TRUE AT1G70130.1 lectin protein kinase, putative similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70110.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G29050.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.179091842025533 -1.93072048247241 0.0799779860271921 1 0.994323429266507 2.60539673949379 -0.179091842025533 0.0744603508785006
AT2G07140_at 3.22840039121028 3.89712005919890 3.59752183185362 3.80771033140632 3.54508529369565 3.86234501391161 3.09637981384155 2.51552138272239 4.29712698176105 4.10119471333844 4.33962892382902 4.12544791046126 3.8535700004756 4.32113748965009 4.22039353997565 4.57489452091175 3.56376093133681 4.30945423432995 4.14738415547333 0.35036104951604 0.373731692404984 0.365292169754180 0.35307605297724 0.376743868669607 0.350739742249986 0.35036104951604 0.374822313748554 0.351897336192012 0.35036104951604 0.379887760676803 0.35036104951604 0.363703110892821 0.35036104951604 0.35036104951604 0.35036104951604 0.420328203400831 0.35036104951604 0.3720985627643 2 2 + 2958261 2958629 2958413 2957558 2958712 + gene protein_coding_gene FALSE TRUE AT2G07140.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G44120.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE93721.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.250222099826921 1.93061205868009 0.0799926785446732 1 0.994169336469724 7.61647946176114 0.250222099826921 0.166835416949349
AT1G31800_at 9.23183038191571 9.27215551463926 9.3853004100324 9.27238479869856 9.60754599249582 8.80118610174022 10.2731803002597 9.8584399197971 10.1696252149095 10.0266893925512 10.1211001110812 10.0435617363125 9.70728601096625 10.0513676835238 9.96919136974818 10.1274718647761 9.39770839453315 9.98055563267173 9.85592148805573 0.101399883756861 0.102755121822914 0.108241157737892 0.102652232411646 0.102659323121845 0.121396719872394 0.100971991595019 0.100610900025870 0.106838747557146 0.104433491047021 0.0988318983817234 0.0989008738668222 0.102294989548440 0.101308231292174 0.106436838665642 0.0988318983817234 0.130876714503142 0.109402131169193 0.102060896301567 1 1|0 +|/ 11398601 11399427 11398987.5 11396383 11399695 + gene protein_coding_gene FALSE TRUE AT1G31800.1 CYP97A3/LUT5 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding Encodes a protein with β-ring carotenoid hydroxylase activity. similar to LUT1 (LUTEIN DEFICIENT 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G53130.1); similar to cytochrome P450 monooxygenase CYP97A10 [Medicago truncatula] (GB:ABC59110.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABD28565.1); similar to cytochrome P450 monooxygenase CYP97C10 [Glycine max] (GB:ABD97103.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.242464442399194 -1.93038891335215 0.0800229248598734 1 0.993852212488964 19.4338491185926 -0.242464442399194 0.158286083502243
AT1G55265_at 8.0208289196722 8.8586652206376 8.6971121544524 9.18300910301486 8.44714863570852 8.89964596361053 7.99150649135603 8.98517083766927 6.84068221974008 7.55431095673766 5.63771454859865 5.16038446381397 7.16260934572281 6.91182377615961 3.39050847789403 6.9260894203077 6.9627782693179 6.181391592348 6.76457321741434 0.257025192623362 0.258181247125578 0.258352005521457 0.25987685622918 0.254439412805126 0.258029438914012 0.257821721072268 0.262514148459685 0.260457699713549 0.255305173659552 0.264457700938726 0.267787316448625 0.253465874425839 0.257870018732731 0.261145520550096 0.253465874425839 0.262034207938269 0.254968553284713 0.255735405995912 1 1 + 20621190 20621469 20621316.182 20620980 20621672 + gene protein_coding_gene FALSE TRUE AT1G55265.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19860.1); similar to Protein of unknown function DUF538 [Medicago truncatula] (GB:ABE78678.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.334420107165444 -1.93020932100883 0.0800472754674754 1 0.993596995778127 15.1828115581324 -0.334420107165444 0.252576123180788
AT3G49150_at 0.601347785648975 0.386395606793857 0.878222093401237 1.11371555228233 0.782557450479138 1.30238824214332 0.475581922922184 0.793459613853104 0.742692033999003 0.443805732508053 0.576819620666533 0.540183134578054 0.646767568505372 0.561822619600299 0.930028064020654 0.112978151312954 0.600506767521717 0.764822682621495 0.697231725513521 0.173795409139466 0.186131671949525 0.179208593260165 0.185670731767873 0.177813553620642 0.193134523360054 0.180093243291903 0.173795409139466 0.190460594034965 0.183360949666725 0.180326879473273 0.176566009727267 0.185333570628929 0.180513715446136 0.178555072138888 0.188354421180196 0.190290466102319 0.185026464706937 0.193275426059306 3 3|0 +|/ 18231191 18232517 18232224.4 18229843 18232903 + gene protein_coding_gene FALSE TRUE AT3G49150.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G59240.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92026.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.209427923850917 1.93017764010626 0.0800515717373972 1 0.99355197548236 1.40153398682897 0.209427923850917 0.119009767383285
AT1G11390_at 3.75314974361418 3.40261478682861 3.73736508194013 3.70166856113343 3.37343970445978 3.74455541982848 3.78471211191063 3.88560216752169 3.29626886035675 3.73968340692047 3.96039895068073 4.24881604265521 4.12554691202148 4.15866299722199 3.85234184378869 4.09251169082931 4.57267789285554 3.66956461907724 3.88585716311299 0.185146526647819 0.190422787605666 0.187685061095947 0.186693814766037 0.188142405665906 0.187503501038090 0.192453910643591 0.194212306231404 0.183144143935985 0.19389442966725 0.195542944066255 0.183144143935985 0.197473360679211 0.191687198226865 0.184860608694578 0.191026599122674 0.200429376059281 0.190174582981193 0.19386010889958 1 1 - 3834766 3835621 3835271.7 3834459 3837629 - gene protein_coding_gene FALSE TRUE AT1G11390.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G61640.1); similar to H0112G12.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67057.1); similar to putative 62.8 kDa protein [Oryza sativa (japonica cultivar-group)] (GB:AAL87193.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABD32343.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) 0.188599732274776 1.92879184284666 0.080239709941021 1 0.991583001181824 7.53572257820695 0.188599732274776 0.0902633410466867
AT2G25620_at 2.91194855206969 3.10745364552595 2.84591833674213 3.1382317645087 2.19491090356105 2.28925101923604 3.08549125371893 3.26576130640897 2.59454443020123 2.90714179311564 2.74943506343396 3.20407038585462 2.74165690812664 2.38321870482714 2.88704997400608 2.65486032371792 2.57784405602585 2.52308904179822 2.27627433607758 0.184138517318194 0.180219151481915 0.176771526333903 0.179396566834134 0.176745025584539 0.176529436896863 0.183053625842867 0.192335765795542 0.183704490938358 0.182876180231911 0.185130658825003 0.186140546156284 0.179543444651861 0.180567371208746 0.187942781266156 0.179860033386099 0.183830123340725 0.179712259595711 0.179904180059005 2 2 - 10910273 10910760 10910518 10910021 10912323 - gene protein_coding_gene FALSE TRUE AT2G25620.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G33700.1); similar to protein phosphatase 2C [Mesembryanthemum crystallinum] (GB:BAB88943.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.176543072996625 -1.92815646005198 0.0803261075147312 1 0.99068044293474 5.50877413623241 -0.176543072996625 0.07030935003755
AT3G57040_at 8.08504887218393 8.26647750742302 7.92441345761031 8.16915708361279 9.0729028457932 8.81800236449132 10.1783565175152 9.74022235464037 8.6026240705547 9.59712953273383 9.49981946295758 9.4515552243224 9.57514905660826 9.62834721028805 9.6279696369098 9.69767487690826 9.76957416138038 9.31256708456458 9.97750498061627 0.126181768447133 0.121757298869726 0.137942869536895 0.127800201343804 0.119276377941085 0.129605128375630 0.123117562553641 0.127474601804799 0.151320248327436 0.121843770836645 0.129035144861708 0.119276377941085 0.119276377941085 0.119276377941085 0.120546385358145 0.120010418481358 0.123031938985752 0.129220532452173 0.122773346847755 3 3|0 +|/ 21121244 21122180 21121853.1 21120593 21122411 + gene protein_coding_gene FALSE TRUE AT3G57040.1 ARR9 (RESPONSE REACTOR 4); transcription regulator response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2 Identical to Two-component response regulator ARR9 (Response reactor 4) (ARR9) [Arabidopsis Thaliana] (GB:O80366); similar to ATRR3 (RESPONSE REGULATOR 3), transcription regulator [Arabidopsis thaliana] (TAIR:AT2G41310.1); similar to SRR198 [Striga asiatica] (GB:ABG35780.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.196747406894791 -1.92773350738545 0.080383667209953 1 0.990079713606803 18.2631984340141 -0.196747406894791 0.10234418174584
AT1G20980_at 9.2480853432769 9.6998200085711 9.53753163821327 9.55453860161568 9.81513345595802 9.70899133898052 8.9060068061271 9.23172983406774 9.5773340527388 9.22842482618428 9.4898024294834 9.36800170193872 9.3195822095908 9.46260106399915 8.93437764013046 9.62908355873255 9.21607197439223 9.18225204422209 9.15520941701474 0.118926466576977 0.111462052060943 0.119044660109922 0.120184016648513 0.110412507991624 0.111467337877773 0.113085813891692 0.109205647955704 0.116200090336454 0.114958084113013 0.114578822982235 0.110020499111747 0.121203174115968 0.113369564022494 0.112387954322119 0.109905140018358 0.120558566719275 0.116493690731602 0.118571674733271 1 1 + 7328250 7328808 7328513.091 7324577 7329374 + gene protein_coding_gene FALSE TRUE AT1G20980.1 SPL14 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14); DNA binding / transcription factor Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. Identical to Squamosa promoter-binding-like protein 14 (SPL1-related protein 2) (SPL14) [Arabidopsis Thaliana] (GB:Q8RY95;GB:Q9SMW6;GB:Q9SMX0;GB:Q9SYN9); similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G76580.1); similar to Squamosa promoter-binding-like protein 16 (SPL1-related protein 3) (GB:Q700C2); similar to SBP [Medicago truncatula] (GB:ABE79674.1); similar to putative SPL1-Related2 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10073.1); contains InterPro domain SBP; (InterPro:IPR004333); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.193768536589866 1.9273157812492 0.0804405531312766 1 0.989486464890339 18.7855017999132 0.193768536589866 0.098156490069734
AT2G16480_at 4.61598762577411 4.97507214632351 4.80645770389653 5.2932333488083 5.19404499363334 5.11958479930746 4.93709500211417 4.66350175223034 4.43832386277784 5.19383912248433 4.90026490690018 5.11453872608591 5.30252612678869 4.9870998797771 4.82046409352301 5.26041071899495 5.17097029926212 4.26871280004491 4.9795264183232 0.203269752544696 0.200185104276269 0.199662839893369 0.20912426060661 0.197621401290295 0.205394865418634 0.19702378791461 0.194700661176768 0.210678984634901 0.199564446222479 0.197559911272764 0.202158391611863 0.199263504707245 0.204164314148790 0.204016654414734 0.2001843153566 0.213817815539029 0.194700661176768 0.196384330378545 2 2|0 -|/ 7147359 7148012 7147797.1 7147357 7148931 - gene protein_coding_gene FALSE TRUE AT2G16480.1 SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51120.1); similar to Plus-3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54582.2); similar to Os10g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065041.1); contains InterPro domain Plus-3; (InterPro:IPR004343); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) 0.206488194597264 1.92724307849082 0.080450457598296 1 0.989383219282245 9.87496546073625 0.206488194597264 0.115609039387525
AT2G34520_at 7.55295047861008 7.51997453530373 7.09582898455425 7.22304977554423 7.4449176928159 7.4505955358075 6.66641117840576 7.04525826916979 6.37652480698969 6.00698152716816 6.4577421439635 6.67542908672901 6.30337354773509 6.24300426274261 6.84697855194476 6.12450693770865 6.75314351436322 6.5194040970162 6.35499457638537 0.212550779764281 0.212977544168782 0.214672716019341 0.218630234169064 0.209544264217678 0.209544264217678 0.216275292686184 0.21993562605538 0.217934402710869 0.214593516355877 0.216227636721525 0.216784636028208 0.210738853324435 0.219375872874683 0.214823047929009 0.215301781710119 0.221340940350682 0.212204213503157 0.218018882470201 2 2 - 14555335 14555683 14555503 14554863 14555837 - gene protein_coding_gene FALSE TRUE AT2G34520.1 RPS14 (ribosomal protein S14); structural constituent of ribosome nuclear-encoded mitochondrial ribosomal protein S14 similar to ribosomal protein S14 [Brassica napus] (GB:YP_717170.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) 0.175865089701219 1.92611751733274 0.0806039396338524 1 0.987785023483527 13.6181806752546 0.175865089701219 0.0694011556109577
AT2G30400_at 0.611022588101682 1.04863689614128 1.02188143049719 1.2009132860405 0.726532674626856 1.27465493755450 0.904202836492152 0.908309439390795 0.449222997785318 1.29676456713886 0.932226408603299 0.773522807556736 0.777910011572245 1.20864953377414 1.47538864694465 0.945561100980842 1.00610768318669 1.34710625322013 0.709742393412662 0.204725906464343 0.207089785482717 0.205076499417629 0.204944541735585 0.206551978415878 0.205060013802381 0.210953711861384 0.205604397729469 0.202903527932955 0.220275191916278 0.212499208255678 0.204149057353068 0.208723026993467 0.206568583420577 0.207133830976887 0.202903527932955 0.211630139559854 0.202903527932955 0.202954146146453 2 2 + 12964046 12964597 12964373 12963638 12964631 + gene protein_coding_gene FALSE TRUE AT2G30400.1 ATOFP2/OFP2 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2) similar to ATOFP4/OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT1G06920.1); similar to Os01g0823500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044660.1); similar to ovate family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87078.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) 0.213842522549589 1.92541368627568 0.0807000521408774 1 0.986785856880367 1.90046211536001 0.213842522549589 0.125272162282146
AT2G03840_at 0.596610281684991 1.11831453581089 1.16072345712993 1.08761597488293 1.00459413362997 0.858524872984787 0.79433253318831 1.09273217775757 1.73081858186007 1.26769250740108 0.973465993869832 1.17954963749343 0.957801410079808 0.944219007089448 0.99026333067675 0.847218387076883 0.88657845441 1.58771472398930 1.72372655934060 0.178825518601267 0.187096648145847 0.179605518424577 0.178429723716878 0.184924215053021 0.179018498819507 0.179045864761199 0.184363808384880 0.185796272759715 0.183143010915923 0.187423148479862 0.191647685191261 0.188771095852442 0.190915250789811 0.182392644317992 0.181194810517610 0.178429723716878 0.188051749199013 0.179889111248979 2 2|0 +|/ 1173404 1174072 1173692.4 1173167 1174112 + gene protein_coding_gene FALSE TRUE AT2G03840.1 TET13 (TETRASPANIN13) Member of TETRASPANIN family similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] (GB:AAC34855.1); contains InterPro domain Envelope glycoprotein GP120; (InterPro:IPR000777); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) -0.200430310284220 -1.9253891036065 0.0807034109748753 1 0.986750961969707 2.27414628802680 -0.200430310284220 0.107781052291033
AT1G07330_at 1.76641468940414 1.79092469948797 1.78796840303677 2.14385686337930 1.70476341145811 1.62637205619861 1.78692764996191 2.11386433951040 2.51954555591938 2.20495413762840 2.23569987260197 1.63255772810609 1.96335599470545 2.20119092489888 2.57324167005847 2.07696565562435 2.21137467851018 2.14923873926905 2.62915842186069 0.193370292020377 0.198508175573923 0.199341583633519 0.200674613165815 0.195600022427358 0.192383453224098 0.194072534089937 0.197711875862707 0.190387454649404 0.210558661901558 0.192088026935563 0.194881354533804 0.190726858012481 0.200017312128213 0.194468363669444 0.202355877836055 0.194949712505059 0.197327574154924 0.195498210295591 1 1 + 2252909 2253531 2253271.455 2251130 2253584 + gene protein_coding_gene FALSE TRUE AT1G07330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G29620.1); similar to H+-transporting two-sector ATPase, alpha/beta subunit, central re (GB:ABE91554.1); similar to hypothetical protein [Glycine max] (GB:BAB41198.1) -0.184779437451963 -1.92525811820946 0.080721310246435 1 0.98656503253388 4.13097277894197 -0.184779437451963 0.0848303548210931
AT3G58730_at 10.0267284561744 10.2621745596887 10.2372028781208 10.3382045964169 10.2145011404432 10.1356170465178 10.2660059223741 10.5098597299896 10.1871662558299 10.1364472661218 10.6780746579792 10.5189925225281 10.4447409580701 10.4210726540980 10.6405699497217 10.4740854090692 10.0554161755478 10.3578724554542 9.88501256006564 0.0876612416715916 0.087005797332855 0.0913703386285232 0.0908881496258245 0.0911141692290426 0.091374686104565 0.0880152835486585 0.087005797332855 0.0983223083209213 0.0887762157775374 0.0931526117057159 0.0884029172431277 0.0880510329704305 0.0967910442702589 0.0901185331968136 0.087005797332855 0.098314392892647 0.0901633882430488 0.0906292303999118 3 3 - 21729511 21730045 21729821.364 21729234 21730957 - gene protein_coding_gene FALSE TRUE AT3G58730.1 (VACUOLAR ATP SYNTHASE SUBUNIT D); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism Identical to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit) (VATD) [Arabidopsis Thaliana] (GB:Q9XGM1;GB:Q9LXS8); similar to mitochondrial ATP synthesis coupled proton transport protein [Solanum melongena] (GB:ABF00095.1); similar to Os04g0643100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054048.1); contains InterPro domain ATPase, V1/A1 complex, subunit D; (InterPro:IPR002699) 0.172250159393710 1.92439028559990 0.0808399932549308 1 0.985333314678033 20.5079843537895 0.172250159393710 0.0627125829886444
AT2G16060_at 4.04600997633728 3.81377245019415 3.18082640182678 3.12515794841679 3.19328145189433 3.30514598592985 3.01435957000416 2.74229449498123 3.63265635907693 3.28633707299582 3.44854761628921 3.68011314343893 2.77252507183353 3.15139378590904 3.76765231361484 3.13008367449162 2.89773783155664 3.40399155344397 3.35838596710628 0.199160260667254 0.202224170471837 0.195095632065809 0.190711567115249 0.194312243419275 0.196332721895250 0.189657994121701 0.196949966956928 0.191582501548063 0.192937607485043 0.189522555533828 0.190279402799856 0.195321917602018 0.190734582221068 0.189522555533828 0.193733545907842 0.205064341838518 0.191424217502845 0.191980658887228 2 2 - 6989888 6990541 6990160.455 6989703 6990713 - gene protein_coding_gene FALSE TRUE AT2G16060.1 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) Encodes a class 1 nonsymbiotic hemoglobin induced by low oxygen levels with very high oxygen affinity. It is not likely to be a hemoglobin transporter because of its extremely high affinity for oxygen. Identical to Non-symbiotic hemoglobin 1 (Hb1) (ARAth GLB1) (AHB1) [Arabidopsis Thaliana] (GB:O24520); similar to AHB2 (NON-SYMBIOTIC HAEMOGLOBIN 2) [Arabidopsis thaliana] (TAIR:AT3G10520.1); similar to nonsymbiotic hemoglobin [Raphanus sativus] (GB:AAP37043.1); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Globin; (InterPro:IPR000971); contains InterPro domain Globin-related; (InterPro:IPR012292); contains InterPro domain Worm globin; (InterPro:IPR013316); contains InterPro domain Leghaemoglobin; (InterPro:IPR001032) -0.173646842549860 -1.92387910787072 0.0809099764784068 1 0.984607913740562 6.65625541338902 -0.173646842549860 0.0655706665786461
AT1G03700_at 0.974302213702641 1.01023090122502 0.814072294651365 1.47940028857848 0.918588837907282 1.38963932215238 1.27039909837407 1.33636454603824 1.79285027051284 1.73725816987092 0.777574374193959 1.13551172298770 1.43132643743599 1.06974860216374 1.06457318934160 1.00620940040939 1.29894622881526 1.20129321478212 1.2099448523025 0.220154658196142 0.210285029454676 0.204929672135109 0.214115694331604 0.211586162756894 0.214767153685511 0.214877281573671 0.206003361764638 0.215405865676988 0.204929672135109 0.204929672135109 0.209679979256038 0.217178034044038 0.209440484110011 0.222817052173254 0.212261162725287 0.207037171531495 0.219191393054643 0.205220061860480 1 1 + 921066 921813 921418.818 920950 921901 + gene protein_coding_gene FALSE TRUE AT1G03700.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G03540.1); similar to Os05g0245300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055014.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV43976.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.227134435987575 -1.92346486744513 0.0809667295650613 1 0.984020137177475 2.50070751807617 -0.227134435987575 0.141671664168506
AT3G13720_at 8.44223857689658 8.70804828105147 7.75295612583975 8.3234147535398 8.42000324368935 8.72562237408282 8.02262326565747 8.45297678304646 8.47376562134906 7.70200400331994 8.9916008408527 8.79740173568837 8.97858764254302 8.89460282471186 8.42284406208802 8.71480598768695 8.19467445872692 8.26859743982457 8.129765420302 0.131122691697683 0.128877591938854 0.132432071889949 0.137475889235439 0.133057877256765 0.136400213112371 0.135960296125508 0.147202189455285 0.157228860213377 0.154273635601307 0.128219212137201 0.126885646330389 0.142048971439027 0.136999873909256 0.133362975693834 0.126885646330389 0.141087405658979 0.134526266286477 0.139189050474803 3 3 - 4495219 4495710 4495501.273 4495026 4495963 - gene protein_coding_gene FALSE TRUE AT3G13720.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G13710.1); similar to prenylated rab acceptor family protein [Thlaspi caerulescens] (GB:AAY18432.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.227535878324952 1.92345609449942 0.0809679319026229 1 0.984007689623833 16.7358526199783 0.227535878324952 0.142145740631687
AT4G24430_at 2.24553346311133 1.81424755465679 1.67332225797413 1.76219633982756 1.63640756049714 1.83538083911399 2.19087461018032 1.77003746502843 2.43871507615204 2.59545051758340 2.57181878505363 2.44817229146268 2.35188264203812 2.08610743972623 2.49531776328602 2.14516953397398 2.19794513040182 2.44210498112641 2.37258340723691 0.167827694548876 0.166460457726575 0.164847347745731 0.173423390323486 0.164847347745731 0.168369258782048 0.174795102206219 0.170020117936613 0.169549967059131 0.168361890489403 0.168483178984374 0.169457899577552 0.167548518618259 0.174053860687830 0.167443146598682 0.168593715083952 0.168936015498342 0.168016484781517 0.169509008800201 4 4 + 12632231 12632954 12632658.091 12630728 12633085 + gene protein_coding_gene FALSE TRUE AT4G24430.1 lyase similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09880.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062464.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); contains InterPro domain Rhamnogalacturonate lyase; (InterPro:IPR010325) -0.202474018332425 -1.92297279760471 0.0810341935840997 1 0.983321999532682 4.27161558856924 -0.202474018332425 0.110890156146543
AT3G42920_at 1.25725236354945 1.27609767784109 1.45936903893644 1.18702650090442 1.24060753170123 1.27336805599756 1.12189226151623 1.38008864714609 0.991660330861263 1.16310117247615 1.09563699054902 1.50805123383942 1.57882235858943 1.75171472807861 1.63170821701529 1.03319882241661 1.38133613283535 1.71585967357013 1.28469458865079 0.193921784948233 0.191429090569813 0.193217092804836 0.192391704545544 0.197670632692554 0.193604141144262 0.198868915171270 0.191429090569813 0.197485803417076 0.199305339402426 0.196750983592113 0.191696280948568 0.191442048672168 0.196578210266154 0.198687824852975 0.191429090569813 0.199080190036486 0.196192637192207 0.198250360062099 3 3|0 -|/ 14997907 14998384 14998124 14997907 14998416 - gene protein_coding_gene FALSE TRUE AT3G42920.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G04390.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1) 0.173407849993682 1.92292379199700 0.0810409152258948 1 0.983252475824978 2.57872595150296 0.173407849993682 0.065272638116044
AT4G13260_at 3.09683187195655 2.89992231707027 2.72039823611722 2.46385581443411 2.76300735183633 2.49361669134546 2.65224490167807 2.43272631732088 3.21369982749762 3.4159650373479 3.57615229412446 3.05338487370761 3.2908190833074 2.88336288600733 3.25948982851192 3.18297436985888 3.37744747898798 3.26634200459853 3.69567133101496 0.196908532493498 0.208479029283857 0.194245854161468 0.200729533080422 0.193448382396044 0.201487909815264 0.191617371439301 0.198007545867998 0.197877519986932 0.186744169755695 0.195123612232596 0.186744169755695 0.194385245451577 0.195761332280036 0.187010106699428 0.188732938120019 0.204292976414736 0.202562420271735 0.200203659619767 4 0|4 /|- 7721912 7722578 7722308.3 7721614 7723985 - gene protein_coding_gene FALSE TRUE AT4G13260.1 YUC2 (YUCCA2); monooxygenase/ oxidoreductase similar to YUC6 (YUCCA6), monooxygenase [Arabidopsis thaliana] (TAIR:AT5G25620.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I; FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Medicago truncatula] (GB:ABE83417.1); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.182871979069322 -1.92262952825338 0.0810812874945659 1 0.982835023713987 6.02933810489061 -0.182871979069322 0.0821503310013441
AT1G69170_at 3.2700126714732 3.20917324878120 3.47557017273978 3.36193107659435 4.31837381896378 3.30093056860354 3.95782903690648 3.98918347486288 3.93943943170048 3.66032709013824 3.20559865108469 3.19925895759656 3.49465888335146 3.34735882966467 2.95438928363172 4.03574305190587 3.41312139388598 3.43126183880286 4.13263326155021 0.218121338986922 0.214030643274274 0.220521858261572 0.214526638867603 0.219414824212132 0.223687369056197 0.230192647453478 0.219863357973507 0.221209596652644 0.218960914174729 0.222488376762093 0.221489178594261 0.219795461150892 0.214152503146779 0.218391733129628 0.214030643274274 0.228711679798584 0.219542529093682 0.21525111902806 1 1 + 26010005 26010677 26010413.818 26008731 26010926 + gene protein_coding_gene FALSE TRUE AT1G69170.1 squamosa promoter-binding protein-like 6 (SPL6) Identical to Squamosa promoter-binding-like protein 6 (SPL6) [Arabidopsis Thaliana] (GB:Q94JW8;GB:Q9LQA4;GB:Q9S7A2); similar to squamosa promoter-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G50670.1); similar to squamosa promoter-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G50570.2); similar to squamosa promoter binding protein 3 [Physcomitrella patens] (GB:CAI91301.1); contains InterPro domain SBP; (InterPro:IPR004333) -0.258987132668203 -1.92204500599835 0.0811615377597873 1 0.982005885749678 7.25836240313404 -0.258987132668203 0.177563627109151
AT3G07300_at 7.38211725996213 7.43454665291274 7.34205660313715 7.28125069667531 7.29932877744882 7.27133208802545 7.70133360286237 7.32729508589077 5.59018303463311 6.26629903622524 5.82687714718336 6.70685440552984 6.64744262869856 6.34667590463784 6.73130332646023 6.52384202486698 6.64221014200204 5.93074231411202 5.87025099895208 0.218061081378609 0.217192211511514 0.223453518644795 0.217370486668791 0.217192211511514 0.224415898741714 0.217192211511514 0.22560718959237 0.230652905688201 0.219326450649156 0.221209949866604 0.227805783005511 0.232072905300888 0.230749172443520 0.233848354916078 0.230848038620663 0.220281158326468 0.220809535423452 0.226633914407655 3 3|0 -|/ 2325170 2325946 2325469.667 2324623 2327630 - gene protein_coding_gene FALSE TRUE AT3G07300.1|AT3G07300.2 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein|GTP binding / translation initiation factor similar to eukaryotic translation initiation factor 2B family protein / eIF-2B family protein [Arabidopsis thaliana] (TAIR:AT2G44070.1); similar to putative translation initiation factor 2B beta subunit [Nicotiana tabacum] (GB:AAD52847.2); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) 0.173875677165447 1.92178621865639 0.081197090686608 1 0.98163883477509 13.5441098508426 0.173875677165447 0.0663805808718236
AT2G30130_at 0.0536587253012683 0.101335916402436 -0.127221133205594 -0.239108650075405 0.231237147060113 0.0858786649847875 0.120712976500456 -0.0766570127380689 0.142467684716875 0.243398703391441 0.526815715306494 0.166849459148298 0.511257674889997 0.106688569827676 -0.232470391835370 -0.234721718623575 -0.0382182551155254 0.321584570781125 0.841947878551494 0.196461377145415 0.205697306257739 0.197537716282095 0.205156669645464 0.201061653160740 0.202914541511815 0.2019385015929 0.196461377145415 0.206051621634776 0.204098314288043 0.200078233069834 0.200215499977924 0.202130920065166 0.202424261465638 0.200586888804282 0.203236075269456 0.205395034015267 0.205622214847185 0.201435878670077 2 2|0 +|/ 12875830 12876661 12876243.9 12875707 12876801 + gene protein_coding_gene FALSE TRUE AT2G30130.1 ASL5 (phosphoenolpyruvate carboxykinase1) Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. Identical to LOB domain-containing protein 12 (LBD12) [Arabidopsis Thaliana] (GB:Q8LBW3;GB:O64734); similar to LOB domain protein 4 / lateral organ boundaries domain protein 4 (LBD4) [Arabidopsis thaliana] (TAIR:AT1G31320.1); similar to Os05g0346800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055264.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07117.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.165182181674047 -1.92144886884045 0.081243458392549 1 0.981160387770287 0.293851891912413 -0.165182181674047 0.0473537556087503
AT2G43310_at 2.10574681772697 2.09501856911803 1.5831551976588 1.69580745749247 1.8792670337454 1.5279999881133 1.78715050718366 2.19069458156313 2.33130261989038 1.96920394534054 2.11896282755896 2.00534732475568 2.14973810896079 2.38804210741795 2.17729193351444 1.91307887936549 1.44168755422293 2.41237490903767 1.95205020107349 0.179479067700918 0.180451479436645 0.194382961863775 0.182561909514419 0.175316479617051 0.180564783311193 0.175316479617051 0.176366189465576 0.185828337574748 0.185684794979485 0.177702840098627 0.175599445301637 0.186030254599181 0.178323149456601 0.183868286267932 0.187068060000126 0.182139554512037 0.181360064853616 0.183397588808900 2 2 + 18003203 18003503 18003352.364 18002978 18003765 + gene protein_coding_gene FALSE TRUE AT2G43310.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90591.1); contains domain Translational machinery components (SSF53137) -0.190732666404676 -1.92098686354779 0.0813069993854091 1 0.980505208602665 3.93810554126141 -0.190732666404676 0.0946344779928774
AT4G10620_at 3.55179711177431 3.78194896481067 3.77314292043719 3.45908202399286 3.42383471505389 3.40431516177141 3.79805312520004 3.51975468473438 3.57951340631255 3.06416048046783 3.16729385614058 3.19775133052215 3.33660207139134 2.97145941008538 3.55453499948689 3.10057420673067 2.96611832593666 3.52865756160807 3.69522436367069 0.201652521445042 0.21512996534072 0.206396782571223 0.201652521445042 0.207224109077296 0.204099069097635 0.201652521445042 0.208666025022618 0.203864983270733 0.201652521445042 0.210521370311609 0.207458368045864 0.201652521445042 0.213352881320584 0.213499949173619 0.203785276913622 0.217819032223184 0.203389516931488 0.201673998096934 4 4|0 +|/ 6565663 6566363 6566058.667 6564275 6566500 + gene protein_coding_gene FALSE TRUE AT4G10620.1 similar to GTP binding [Arabidopsis thaliana] (TAIR:AT3G57180.1); similar to SDL-1 protein [Medicago truncatula] (GB:ABD33306.1); similar to Os06g0498900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057702.1); similar to Os09g0364500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063000.1); contains domain GTP-BINDING PROTEIN-RELATED PLANT/BACTERIA (PTHR11089:SF3); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain GTP-BINDING PROTEIN-RELATED (PTHR11089) -0.183110106447661 -1.92036243066561 0.0813929526422345 1 0.979619799114828 6.92607778199922 -0.183110106447661 0.0828921284800927
AT4G03180_at 4.73102430974715 5.18812569002138 5.33216310397063 5.24549309486486 5.36971544893194 5.47863006801628 5.00198778889956 5.20801997106842 4.90694398504068 4.64146147246987 5.18972501284427 4.95688834041855 4.68945345262727 4.75530816890766 4.99130513228109 4.68819787507334 4.7866125630136 4.75259632366629 4.85228833805905 0.217420059213444 0.221291554404243 0.223905846814837 0.219638873157716 0.21796853535375 0.217726938552343 0.212576828939435 0.2195391018747 0.220555092588646 0.217977681747586 0.217645361375751 0.215081391038056 0.221965576507486 0.219274375078915 0.223833316021021 0.213850216101432 0.21693389585965 0.230855442272955 0.212646493519188 4 4|0 +|/ 1403319 1404637 1403978.9 1403117 1404937 + gene protein_coding_gene FALSE TRUE AT4G03180.1 similar to hypothetical protein DDBDRAFT_0185878 [Dictyostelium discoideum AX4] (GB:XP_638709.1); similar to Os12g0538100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066939.1) 0.187620291212970 1.92020143547739 0.0814151272814865 1 0.979391538114203 10.0201409963370 0.187620291212970 0.0900491430019103
AT4G36515_at 7.97985617184323 7.79612520286694 8.23085573290092 7.82141964614017 8.96234839834058 8.29155417943723 8.0340726536341 7.7161543168293 8.2452553098214 7.96722035254375 7.18463735587473 7.51141045752112 6.83887122852825 7.68458667908174 6.43464382999314 8.032422147006 6.93843015479128 6.7319488499405 8.03501659902154 0.320990416267221 0.282398010687159 0.326371342027737 0.310595064550211 0.282398010687159 0.342225025364465 0.3101749786693 0.282398010687159 0.318729899525754 0.282398010687159 0.33364308459002 0.300307903370801 0.282398010687159 0.287556967945255 0.319241123815142 0.282398010687159 0.282398010687159 0.282398010687159 0.282398010687159 4 4 - 17229893 17230102 17229974.333 17229557 17230299 - gene protein_coding_gene FALSE TRUE AT4G36515.1 contains domain AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED (PTHR23172); contains domain gb def: Trichohyalin like protein (PTHR23172:SF16) -0.2339430898544 -1.91977894895102 0.0814733449687623 1 0.978792571993085 15.7301064169012 -0.2339430898544 0.150112520363014
AT1G63820_at 1.74037019626787 2.03144929456563 2.00169435589399 2.06263186147755 1.92631502101492 1.29529282616608 1.93403417653311 1.57167164066477 1.77213984817261 1.82133731066723 2.21438511354687 1.97999017826966 2.1176964747221 2.07391680928977 2.32887815436751 2.20276427523119 2.25144956928656 2.28812943159627 1.62747204740635 0.226166341969817 0.230597952505519 0.225262613160664 0.232068482541964 0.229604552127893 0.232170901387749 0.237116619304346 0.224810054474722 0.225006160661305 0.222738622570517 0.225423715182278 0.226727081522326 0.230341796915927 0.226302668166249 0.224270106605087 0.224266486047495 0.227341447927004 0.227049820285991 0.226772952798981 1 1 - 23686461 23687451 23687049.091 23686085 23688030 - gene protein_coding_gene FALSE TRUE AT1G63820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41380.1); similar to CCT [Medicago truncatula] (GB:ABD32315.1); contains InterPro domain CCT; (InterPro:IPR010402) 0.221968518918484 1.91973575379594 0.0814792993338682 1 0.97873133682134 3.78166624800839 0.221968518918484 0.136036381151039
AT3G03490_at 6.6759036110823 7.10214456041941 7.01094243081523 7.14575624516662 6.90820819950443 6.52779029876382 6.45804293492859 6.61128390742228 6.6059510975296 7.03237772022172 6.45938199828335 6.46711486267309 6.42541169538212 6.31241130600538 5.61774038913634 6.48262373502773 6.12685409879345 5.86962444837377 6.76796776788632 0.142785022698683 0.137611076907487 0.149769515104055 0.146337723581413 0.139673120178633 0.145788347146886 0.140346633914471 0.141428191645575 0.147482016510708 0.141920329374666 0.138160362392028 0.13861305739523 0.142935689657031 0.143343734556998 0.154755393169439 0.137611076907487 0.146766936399584 0.151835458155989 0.143956868741579 3 3|0 -|/ 830313 831160 830626.3 830172 831895 - gene protein_coding_gene FALSE TRUE AT3G03490.1 peroxisomal protein PEX19 family protein similar to peroxisomal protein PEX19 family protein [Arabidopsis thaliana] (TAIR:AT5G17550.1); similar to Pex19 protein [Medicago truncatula] (GB:ABE80886.1); contains InterPro domain Pex19 protein; (InterPro:IPR006708) -0.197811502535217 -1.91967902444084 0.0814871199729817 1 0.97865091596247 13.3161311128071 -0.197811502535217 0.104988242053655
AT4G09600_at 1.08469313000285 0.896822941888164 0.368381532658423 0.931176812865831 1.14039357131562 1.23442243634839 1.37259899486231 1.39690062127718 1.56784288238157 1.12810587527753 1.04887638037571 1.2753217523447 1.30220411429080 1.26354734504629 0.759731523238615 0.986675287397314 1.50758165186614 1.24180495168126 1.19863058082715 0.183532670740694 0.182192502631217 0.184924554617741 0.186202371529132 0.19442404170336 0.186291200357667 0.193643141090039 0.190448371230992 0.183891142468939 0.19243013529155 0.196373941883768 0.186609154699466 0.182456095173469 0.182192502631217 0.188820041834891 0.182192502631217 0.192955774926203 0.184292695443399 0.193653965658785 4 4|0 -|/ 6073122 6073481 6073277.667 6072801 6073609 - gene protein_coding_gene FALSE TRUE AT4G09600.1 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. Identical to Gibberellin-regulated protein 3 precursor (GASA3) [Arabidopsis Thaliana] (GB:P46687); similar to GASA2 (GAST1 PROTEIN HOMOLOG 2) [Arabidopsis thaliana] (TAIR:AT4G09610.1); similar to GAST-like gene product [Fragaria x ananassa] (GB:AAB97006.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) -0.197067785379604 -1.91902982337348 0.0815766675118148 1 0.97773066887615 2.28887924945677 -0.197067785379604 0.104043959964860
AT4G23930_at 3.15780840845159 3.18903904084864 2.93038571182828 2.81520961427077 3.26254161646967 3.28359261160018 2.78014969614360 3.08377406835138 3.00216203650134 3.23561614668239 3.46949808492944 3.46909954943781 3.17676472451632 3.07607328605977 3.51912371148478 3.15094760506768 3.29084745984013 3.06085729499846 2.63981808728566 0.211838094710520 0.202704381380004 0.200636357038683 0.208847807495415 0.205179456392238 0.206435186403756 0.203784964262051 0.200754833217262 0.201371231979348 0.208293074045934 0.207334677329173 0.202750138541049 0.204561129135748 0.209307100507744 0.200636357038683 0.206471802315825 0.212476964214554 0.201793291902481 0.217989941577400 4 4 - 12436161 12436678 12436448.364 12435956 12436722 - gene protein_coding_gene FALSE TRUE AT4G23930.1|AT4G23930.2 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G64450.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE94038.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.168846146406045 1.91887226934462 0.0815984134522827 1 0.97750735588107 6.18073770667798 0.168846146406045 0.0565737346323161
AT4G08320_at 6.23819592392388 6.54978471169674 5.97060964590264 6.1964843656988 6.70029965187536 6.39836298427643 6.19932378773816 5.51848707757527 5.6514889306442 4.94779688445471 5.67228232294006 5.70909591712198 5.03267346534581 5.88641484502732 5.7109829641635 5.99144055797367 6.07618009693087 5.69716599539459 5.76030533404324 0.230993455073294 0.234963199545331 0.240994070354845 0.239266489721810 0.228906143834142 0.237304213163211 0.230616222052647 0.238372048203032 0.239878804919075 0.231353347965275 0.227329530790516 0.225543179458594 0.229694750416449 0.230481068145463 0.230167963345388 0.224491836780463 0.229160451669041 0.233931494148538 0.232220221208694 4 4|0 +|/ 5254119 5254910 5254618.556 5252808 5255197 + gene protein_coding_gene FALSE TRUE AT4G08320.1|AT4G08320.2 tetratricopeptide repeat (TPR)-containing protein|binding similar to PAPP5/PP5 (PROTEIN PHOSPHATASE 5), phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G42810.1); similar to H0814G11.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86350.1); similar to OSJNBa0039K24.25 [Oryza sativa (japonica cultivar-group)] (GB:CAE01806.2); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.229411878801485 1.91820836877226 0.0816901053530272 1 0.976566450372107 11.8090568037490 0.229411878801485 0.145078376777575
AT1G63780_at 5.20579285795938 5.57374290834132 5.84491945367488 5.64322060530154 5.21685382299255 5.0474441548813 5.69036718706488 5.73466493047139 4.004645982615 3.71711497715495 3.66255387743818 3.54492670359748 3.51753061611593 3.74386562351905 3.74881399823301 3.97259214526829 4.57312171486053 3.71819860859453 4.45196042914529 0.233137993042143 0.230108070060211 0.239970081374458 0.237364819484371 0.230108070060211 0.252583502815054 0.239692478205349 0.240758400478757 0.242285199602162 0.230261548051555 0.233378590661794 0.235838296213691 0.230349110828019 0.233572592633858 0.230108070060211 0.230108070060211 0.231699510158612 0.234450307513354 0.236512609619059 1 1|0 -|/ 23668732 23670282 23669528 23668497 23671030 - gene protein_coding_gene FALSE TRUE AT1G63780.1 IMP4 Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies. similar to MEE49 (maternal effect embryo arrest 49) [Arabidopsis thaliana] (TAIR:AT4G01560.1); similar to putative U3 snoRNP protein IMP4 [Oryza sativa (japonica cultivar-group)] (GB:BAC99390.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.180369590215857 -1.91817118286376 0.0816952439506093 1 0.976513753369096 9.4286795103818 -0.180369590215857 0.078684054620994
AT4G01790_at 2.25210571712594 2.32769643468288 2.4555913677637 2.50304342907181 2.49042944633282 2.43764428864677 2.06771732516249 1.99210068514482 2.1408723732162 1.51764598156342 1.95517727676027 1.68581241941883 1.48874402447219 1.9454147120287 1.80018119973010 1.93604753897021 2.15033828953686 1.42679957933224 1.72731337692989 0.171508761262646 0.168776749013188 0.170285863596389 0.173138187114984 0.180332723259532 0.181960888204792 0.174936542660465 0.17928842478231 0.175321290117811 0.178375115010668 0.174414246512873 0.172220502453230 0.182345322932875 0.173163214537814 0.175036572546047 0.177373195431661 0.176677812186500 0.180590100878381 0.169657382667487 4 4 + 769879 770681 770343 769865 770835 + gene protein_coding_gene FALSE TRUE AT4G01790.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein / ribonuclease P-related similar to ribonuclease P/MRP 38kDa subunit variant [Homo sapiens] (GB:BAD97138.1); similar to Os07g0636400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060394.1); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) 0.157529614276373 1.91775691919098 0.0817525099050487 1 0.975926721697038 4.11271189870858 0.157529614276373 0.0222089241611896
AT3G59380_at 7.4663158498097 7.6742793876784 7.20820103754531 7.40765044381062 8.09121957186176 7.53926404121503 7.42654846439812 7.40356240857049 7.598694358912 7.14927392315622 6.87121391685293 6.9818205306225 6.34568126283592 7.185297548957 6.76859533445954 6.86890269204402 6.81339440548037 6.69961938869973 7.10712689753525 0.176132824622099 0.184021158166082 0.186432878787228 0.175901392660303 0.178853860268657 0.184345529492204 0.189423809119794 0.181176573179629 0.187637115905878 0.184585100754661 0.177580728085888 0.178339164388809 0.186458228486176 0.186333392507845 0.184194694508531 0.175901392660303 0.179936152305756 0.178853397834099 0.184413196578864 3 3 + 21956170 21956670 21956441.727 21955155 21956915 + gene protein_coding_gene FALSE TRUE AT3G59380.1 FTA (FARNESYLTRANSFERASE A); protein prenyltransferase Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. Identical to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha) (FTA) [Arabidopsis Thaliana] (GB:Q9LX33;GB:O65346); similar to protein binding / protein prenyltransferase [Arabidopsis thaliana] (TAIR:AT4G24490.2); similar to Protein prenyltransferase, alpha subunit [Medicago truncatula] (GB:ABE85981.1); contains InterPro domain Protein prenyltransferase, alpha subunit; (InterPro:IPR002088); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.199654422773245 -1.91763030679509 0.0817700196447121 1 0.975747317111815 14.5780538313754 -0.199654422773245 0.107824605614323
AT2G45860_at 5.83345051644195 6.3915789077127 5.56487748951257 6.02695007927091 6.1627923713778 5.72366199206657 5.64237669088674 5.9929804477112 5.20523816742397 4.80100826431373 5.86018284102872 5.84940588824647 5.34471310519312 5.317068230237 6.48407772618309 5.45707831892859 5.30224518639242 4.73107626903718 4.88972266832363 0.188688471845094 0.194522446195823 0.187962673877214 0.191820260359982 0.188973425968088 0.197672851638171 0.187537380769599 0.197941911543944 0.191619559507822 0.193932392053310 0.193821006375692 0.186772121103168 0.190607602951999 0.19415109240782 0.194656803610293 0.189714031346051 0.188541495245255 0.19762437156631 0.189074197863312 2 2|0 -|/ 18881992 18882611 18882218.4 18881834 18882660 - gene protein_coding_gene FALSE TRUE AT2G45860.1 similar to Os02g0824400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048575.1) 0.241190877335431 1.91745826477614 0.081793817591246 1 0.975503549095355 11.1716105513774 0.241190877335431 0.158680545275114
AT1G31660_at 4.84216729172553 5.83709404926943 5.55497580009741 5.59782337376525 5.12463004116995 4.93551048437982 5.94723905255868 6.25471943584577 3.34873290973756 4.06381486266309 3.66151165094712 4.22293323100939 3.72921032230013 3.06861999496358 4.35346322563266 3.56158016575678 3.42583893016259 3.56867776027182 4.01546745483068 0.245252823215878 0.231907605277546 0.232919763188336 0.236204681957632 0.235022136984231 0.249938383527893 0.247593317382602 0.236948067821009 0.248745427832939 0.231907605277546 0.237956747990752 0.236348136954162 0.234252501181650 0.243560501188826 0.23314896737893 0.237487191779736 0.245678078946742 0.231907605277546 0.241177602469192 1 1|0 -|/ 11331502 11332298 11331895.571 11330937 11333521 - gene protein_coding_gene FALSE TRUE AT1G31660.1 similar to Os09g0352400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062958.1); similar to bystin (51.6 kD)-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29025.1); contains InterPro domain Bystin; (InterPro:IPR007955) -0.263714515721674 -1.91729701213944 0.0818161288995388 1 0.975275077538171 9.26592885070529 -0.263714515721674 0.183309377769172
AT3G52960_at 9.47974043168273 9.85870134744024 8.53293092266668 8.84541381733202 8.5606182697151 9.02123893083905 9.36485683425621 10.3915808722441 9.80503688793149 10.0556090643223 10.2840916659255 10.6113197269498 10.1417491663469 10.3422295734828 10.7659472516908 10.3763639733894 9.76370731923112 10.3794240827193 9.78842305105175 0.158705879856264 0.151455805286794 0.165070896288600 0.173567644633131 0.165496455910101 0.166699980105798 0.156828678861586 0.154218837302834 0.152448877442171 0.158300016945573 0.149835392462464 0.147250245367380 0.148787630976888 0.153386284479036 0.160904277148899 0.152172421736708 0.155109082495441 0.148420702239681 0.150948531571487 3 3 + 19650887 19651279 19651070 19650646 19651597 + gene protein_coding_gene FALSE TRUE AT3G52960.1 peroxiredoxin type 2, putative similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os06g0625500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058113.1); similar to peroxiredoxin [Hyacinthus orientalis] (GB:AAS21026.1); similar to Os02g0192700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046165.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.291794146201248 -1.91723759350072 0.0818243516269725 1 0.975190892126621 19.3649487263064 -0.291794146201248 0.212483404105715
AT2G02250_at 2.73204327540578 2.70964923779764 2.30770949556414 3.23077535120823 2.48807063868111 2.69967606663488 2.79413896231862 2.79940417936025 3.09608148003086 3.22517619920211 2.65365925739469 2.24285382832014 2.72185858027994 2.76727247279281 2.54206104685368 2.52414113406741 2.77144812094752 3.35147974814564 3.01260444273807 0.217360287092307 0.205462415093006 0.209302495103204 0.212172235269035 0.206344523025559 0.215774537627052 0.212947168184793 0.216909271917377 0.209942739689962 0.210197500554988 0.215622449101947 0.20501926236703 0.214439473113855 0.205818521558141 0.205923195814706 0.205936023088527 0.212606748475460 0.223512205215730 0.205995867167394 2 2 - 594658 595461 595039.909 594654 595809 - gene protein_coding_gene FALSE TRUE AT2G02250.1 ATPP2-B2 (Phloem protein 2-B2) similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96399.2); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.245845813044298 -1.91709296830513 0.081844368972668 1 0.974985989386934 5.62425047466662 -0.245845813044298 0.163932797412403
AT4G03240_at 5.60817221726931 6.2545406282833 5.36441549572532 5.38407180003461 5.91938450531786 5.80328066592881 5.77710299650482 6.25345686797565 5.10537515777075 5.29131780498213 5.28497511974517 5.46079446797063 5.23682774389302 5.16047287146051 5.03788339232783 5.2717016207455 5.12389078236455 5.04375406879307 5.49636490442817 0.210015622004008 0.194812452862192 0.201052967876054 0.201624220672409 0.199160841492443 0.194812452862192 0.204034117387490 0.197044269498395 0.211987885760247 0.210969459130729 0.198714589105885 0.197997031389179 0.197403149429424 0.206524553300449 0.206708550442064 0.199741951412748 0.202176379301772 0.194812452862192 0.202971717640155 4 4|0 -|/ 1423687 1424393 1423988.375 1423445 1424772 - gene protein_coding_gene FALSE TRUE AT4G03240.1 ATFH/FH (FRATAXIN HOMOLOG) Identical to Frataxin homolog (FH) [Arabidopsis Thaliana] (GB:Q9ZR07;GB:Q6GKV0); similar to putative frataxin [Oryza sativa (japonica cultivar-group)] (GB:BAD53291.1); contains InterPro domain Frataxin-like; (InterPro:IPR002908) -0.225339254035553 -1.91707695809125 0.0818465851996842 1 0.974963306788617 11.0456648791997 -0.225339254035553 0.140438055949267
AT2G34460_at 9.89537357460931 10.0731232146035 10.0908732056890 10.1265876472586 10.1928517409781 9.7776763480788 11.3108548640397 11.3324465477032 10.0317000763553 10.8267675261339 10.8612033203736 10.8018442817142 10.7379492007853 11.0282099495451 10.7453155299175 10.9524255459189 10.2867439625100 10.7323098347444 10.7092717617405 0.113380484255540 0.107581604948242 0.113902082549884 0.116403658930955 0.112552385666948 0.119138708922975 0.118368127387052 0.109426089594288 0.129496871872453 0.111662318719973 0.110752249066180 0.110178190778366 0.112389184916635 0.109877934684712 0.108773731100934 0.109211341310170 0.124122364865908 0.110351676520266 0.109467496326998 2 0|2 /|+ 14537243 14537758 14537486.7 14536687 14538037 + gene protein_coding_gene FALSE TRUE AT2G34460.1 flavin reductase-related similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT3G18890.1); similar to NAD-dependent epimerase/dehydratase [Medicago truncatula] (GB:ABE78360.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.180140949812875 -1.91696248506731 0.0818624328398797 1 0.974801128686912 20.9953883885026 -0.180140949812875 0.0784888781028214
AT3G25740_at 7.31129546433786 6.79046847411134 7.61757816815673 6.97961099306058 8.15089958556822 7.03003218194242 7.89713866067258 7.53006489896424 6.33860393817735 7.48053688084934 7.85264507504587 7.1020355192698 7.39458802055649 7.89733516479506 7.77913071688265 8.36742725185735 7.06649181879325 7.69661609464437 7.33178382095625 0.196170092507061 0.193068689293933 0.204414852356405 0.209617477562668 0.194310398057955 0.212003572832162 0.198842694152094 0.193068689293933 0.197910413558451 0.196611176044918 0.193981105254374 0.207141648551533 0.195822575713786 0.210817537254883 0.194165456308381 0.196845520708768 0.211894576217020 0.198835806187281 0.206923349829200 3 3|0 +|/ 9399858 9400864 9400531.875 9399023 9400999 + gene protein_coding_gene FALSE TRUE AT3G25740.1 MAP1B (METHIONINE AMINOPEPTIDASE 1C); metalloexopeptidase Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B. Identical to Methionine aminopeptidase 1C, chloroplast/mitochondrial precursor (EC 3.4.11.18) (MetAP 1C) (MAP 1C) (Peptidase M 1C) (MAP1C) [Arabidopsis Thaliana] (GB:Q9FV51;GB:Q9LS05); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to mitochondrial methionine aminopeptidase 3 [Homo sapiens] (GB:AAY55948.1); similar to methionine aminopeptidase 1D [Homo sapiens] (GB:NP_954697.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) 0.328256926031723 1.91613440018725 0.081977157443732 1 0.973628079738618 14.7608070138809 0.328256926031723 0.248943194254914
AT4G10940_at 3.2878706969331 3.93239850131613 4.13218678718787 4.3992336229162 4.16739779144854 4.00417636664192 3.37166248176354 3.78586473593798 2.75539489708674 3.20938276766341 2.67624476532569 2.47594759661126 2.89493566476063 2.79498475324178 2.80654063345072 2.82532249372848 3.1919593603132 3.26711167181659 3.01363096331607 0.284837377791981 0.284837377791981 0.285720580854487 0.288996098421417 0.284837377791981 0.292114368302389 0.284837377791981 0.296283208539759 0.291446969696691 0.289327810766262 0.297498581775066 0.284837377791981 0.287383389793548 0.287071101569720 0.298216757718289 0.284837377791981 0.292393756356561 0.288529030555933 0.289233971930985 4 4|0 -|/ 6708979 6710893 6710116.625 6708978 6710919 - gene protein_coding_gene FALSE TRUE AT4G10940.1 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G05670.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96698.2); similar to Os12g0209700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066395.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.227563764722460 1.91598241530758 0.0819982298928882 1 0.973412805552726 6.81481574473222 0.227563764722460 0.143221407720501
AT2G32020_at 2.43245616077369 2.25507653346774 2.96650910010265 2.59858051181780 2.24399458939185 3.09975159464295 2.21518071384562 2.59112807263649 2.35333671378204 2.64588992904186 2.80021302923512 2.3527605939748 2.54165365905500 2.50413852758970 2.86870793659537 2.66972135340318 2.92849671337726 2.81875412772904 2.57546490662274 0.196961188976720 0.194960777490346 0.194960777490346 0.197222963995177 0.201316903134221 0.198595359467258 0.201305915156072 0.198575150952099 0.200952795778739 0.203064639858907 0.194960777490346 0.198216622586859 0.200268957722343 0.198811057539670 0.198822802777175 0.1994479646275 0.200494130687199 0.195529269881111 0.197329039794759 2 2 - 13638453 13638772 13638640.636 13638139 13638845 - gene protein_coding_gene FALSE TRUE AT2G32020.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G32030.1); similar to Os03g0794200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051537.1); similar to GCN5-related N-acetyltransferase [Medicago truncatula] (GB:ABE82958.1); similar to Os03g0794300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051538.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.257203569139491 1.91596524937427 0.0820006102357089 1 0.973388491888816 5.15556112246925 0.257203569139491 0.176523514420886
AT2G24090_at 9.72433388250173 10.0485685894625 8.92686842538249 8.8855359382339 10.0969580106086 9.15084660393586 10.4255812677178 10.3467782026371 10.0453529264583 10.0691724813250 10.6106147884369 11.0134451733994 10.1683487674939 10.3186228688283 11.0201248620984 10.5511755375998 9.13687535852389 10.0594688256573 9.87895039160367 0.128143724225061 0.120949271239357 0.137378078923426 0.134533755428218 0.125722789010966 0.139785180831205 0.127837403554258 0.124276415936954 0.133111488539886 0.121567672960604 0.120949271239357 0.123127162575953 0.125973368553446 0.130001727703477 0.123033817510360 0.123297570140786 0.133536363418292 0.133791873436778 0.121715683015302 2 2|0 +|/ 10249125 10249709 10249283.9 10249044 10250694 + gene protein_coding_gene FALSE TRUE AT2G24090.1 ribosomal protein L35 family protein similar to 50S ribosomal protein L35, chloroplast precursor (CL35) (GB:P23326); contains InterPro domain Ribosomal protein L35; (InterPro:IPR001706) -0.254626992373583 -1.91577800654941 0.0820265787263456 1 0.973123289276027 19.8795137596685 -0.254626992373583 0.173760432996364
AT4G28020_at 2.90921003801033 3.05931667086387 3.00681536021506 3.11959297383774 3.04450079206311 3.51075831891796 2.6292257366337 2.87828313767169 2.8991257663077 3.01426262831897 2.90517019479740 2.63109195214770 2.87718506174992 2.97801195302304 3.24134364706996 2.68615967189779 2.96626454453284 3.37086069947109 2.71069963708449 0.221777858238459 0.220613142592531 0.220937177418639 0.222462906871448 0.232471095484894 0.228527159793588 0.236504183272456 0.220892340621974 0.220613142592531 0.220998959366123 0.220613142592531 0.223406357924023 0.229529968157244 0.223168939464863 0.220613142592531 0.220613142592531 0.228198396123687 0.225274081977495 0.220613142592531 4 4|0 -|/ 13933427 13934412 13933897.625 13933238 13935321 - gene protein_coding_gene FALSE TRUE AT4G28020.1 similar to Protein of unknown function UPF0066 [Medicago truncatula] (GB:ABE81280.1); contains InterPro domain Protein of unknown function UPF0066; (InterPro:IPR001378) 0.191861460239699 1.91570428087421 0.0820368057420801 1 0.973018870613592 5.93556636660498 0.191861460239699 0.0970767966745993
AT3G20550_at 7.1585594005017 7.54833869925708 7.27086875064261 7.29928907385803 7.82012346052215 7.60965228793493 6.81923244526517 7.25558571611848 7.00415410418213 7.12458727735941 6.1564578553326 6.47813695182954 6.64658142930702 6.54086563584411 6.26516485828011 6.54650919310523 6.67162895870263 6.65623030162068 7.46646322291358 0.2052977479164 0.204909644007014 0.203316208054662 0.201170689739624 0.214462900146203 0.207487233610343 0.207906481345803 0.201170689739624 0.209561399134316 0.201369744600111 0.205774740167953 0.201170689739624 0.203765224502312 0.211580735631833 0.204743721340974 0.201170689739624 0.226166955769683 0.210372541396701 0.204295001897197 3 0|3 /|- 7174701 7176455 7175590.375 7174470 7177948 - gene protein_coding_gene FALSE TRUE AT3G20550.1 DDL (DAWDLE) mutant has Delayed growth, curly leaves, abnormal flowers; FHA Domain Protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24410.1); similar to Smad nuclear interacting protein [Danio rerio] (GB:NP_001020641.1); similar to Os05g0545600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056214.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) -0.199325154430907 -1.91522092229641 0.0821038850879685 1 0.972334327967345 14.1945054456731 -0.199325154430907 0.107717028281643
AT3G62840_at 9.45260564504007 9.43389384886053 9.60648557413713 9.47935399367424 9.75376978274682 9.4787649505103 9.78530681837618 9.66303497506203 9.04150873281977 9.12400413628934 9.57232695471487 9.50771809832668 9.58272587951082 9.1962028153225 9.6960105736044 9.34079685848088 9.37689052866423 9.26128944543327 9.1361246177316 0.10698044258672 0.103367689638284 0.0993041011294326 0.109317753094352 0.101649780703057 0.105269046686057 0.0989597965987971 0.108671462503208 0.108637613061882 0.110768899856365 0.106288446101562 0.104293262171770 0.0989597965987971 0.122181741094067 0.107255696659701 0.102882165919815 0.115974162165730 0.108783344610533 0.101256329851738 3 0|3 /|- 23246726 23247046 23246891.6 23246465 23247791 - gene protein_coding_gene FALSE TRUE AT3G62840.1|AT3G62840.2 similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.4); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649)|similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.3); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.168541284371362 1.91510969233790 0.0821193284941577 1 0.972176812701095 18.8527974351530 0.168541284371362 0.0566316281558941
AT2G31680_at 2.61480076782598 3.21030706596238 3.16729369205114 2.87360430086911 2.55903898611895 2.82972710580221 3.02648683263091 3.4166039923184 2.90285679101784 2.80760501130787 4.26123198756919 3.25963784750725 3.73002339447838 3.64240412819095 3.09789552916909 3.33429412078996 3.35074264409955 2.61674084689662 2.54074164874125 0.227040873915274 0.224079547048593 0.219714313017764 0.220708202283280 0.21769347132394 0.224289511709974 0.217627267350073 0.219800160792720 0.228135046447365 0.221546211578670 0.228854010785846 0.217627267350073 0.221130595152684 0.22757274050144 0.229535159402338 0.217627267350073 0.223308533551816 0.232549825745539 0.234054557133974 2 2 - 13480877 13481948 13481584.545 13480671 13482129 - gene protein_coding_gene FALSE TRUE AT2G31680.1 AtRABA5d (Arabidopsis Rab GTPase homolog A5d); GTP binding similar to ARA/Ara-1/AtRABA5e/AtRab11D (Arabidopsis Rab GTPase homolog A5e), GTP binding [Arabidopsis thaliana] (TAIR:AT1G05810.1); similar to small GTP-binding protein (GB:AAA68983.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.225793259253951 1.91501804505211 0.0821320550188795 1 0.97204703198236 6.04324407429402 0.225793259253951 0.141264413528824
AT2G34050_at 4.18733595444831 3.8802028886124 3.97980174329769 4.07404081492958 3.57140025134693 3.54575956143746 4.22543108109917 4.21415696667511 3.54991103959201 3.21964152113649 3.00270075601914 3.39240496358816 3.26837415724126 3.48532398028125 3.74090245370152 3.33214565384003 3.44152115086588 3.46659603607989 3.41103186374356 0.203809489366895 0.209365880156127 0.200447701346963 0.205340219100506 0.198632886362636 0.197942315477194 0.202454188468937 0.209921542026493 0.202338576026592 0.204608810961248 0.205278400346462 0.201927571607104 0.210112857480515 0.203841977791166 0.206187937221940 0.201341774546739 0.204570084589298 0.210169094227801 0.203451825511554 2 2|0 -|/ 14389926 14391095 14390405.778 14389762 14391358 - gene protein_coding_gene FALSE TRUE AT2G34050.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15967.1); contains InterPro domain ATP11; (InterPro:IPR010591) -0.168156563747187 -1.91495420900258 0.0821409206370555 1 0.97195663609574 7.35215330045224 -0.168156563747187 0.0558074522714882
AT1G49670_at 9.05690777152014 9.26089249037832 9.4573399164538 9.42889188880143 9.5758798486641 9.09972092960249 9.3805252513778 9.19537939070788 8.59898817777461 9.03131374150045 9.04583788224238 9.01796946536817 8.85474154837752 9.01751111715337 8.89999662025143 8.95772084073322 8.95370337348357 9.19213229238194 8.70460483636018 0.132768297130351 0.130440063894108 0.132955695223721 0.130286821255422 0.137911063185824 0.132887050270415 0.132603919293205 0.138033244020106 0.135642472760618 0.134050475799659 0.130027784700340 0.137037923054969 0.140633674222123 0.141739805291136 0.136185890181045 0.130709305893632 0.141577316751683 0.134088136952433 0.130046910836867 1 1|0 -|/ 18385275 18386391 18385973.625 18384926 18389776 - gene protein_coding_gene FALSE TRUE AT1G49670.1 ARP protein (REF) similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT3G56460.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE83367.1); similar to NADPH oxidoreductase homolog [Cicer arietinum] (GB:BAA78050.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE83366.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Quinone oxidoreductase/zeta-crystallin; (InterPro:IPR002364); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.190590655252477 1.91487556358749 0.0821518442125689 1 0.971845271067137 18.1923191331269 0.190590655252477 0.095325534080045
AT2G37220_at 10.7080099623406 10.8154768249844 10.3298065515363 10.4908348100707 10.6421380101440 10.5868577391225 10.5027270419890 10.7300832868188 10.8577828275334 10.7772561741536 11.1514125034762 11.2910373807765 11.4107939754872 11.2780801295480 11.4165436986685 11.3727684071911 11.2747631482106 10.7447633995402 10.562661735919 0.0851341762722593 0.0837816766709663 0.0905620473499345 0.0863810226083632 0.0857154768804286 0.0898218166854165 0.0900415787669746 0.0853455105629649 0.0848082567545966 0.0879732218619153 0.083874547997658 0.0837816766709663 0.0837816766709663 0.087393841005159 0.0837816766709663 0.0837816766709663 0.0868665502343154 0.086032089752757 0.0868187845491264 2 2 - 15642068 15643089 15642496.364 15641604 15643488 - gene protein_coding_gene FALSE TRUE AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA binding [Arabidopsis thaliana] (TAIR:AT3G53460.2); similar to 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) (GB:Q08935); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.166644208256070 1.91388076472822 0.082290134356568 1 0.970436773461206 21.5882853998246 0.166644208256070 0.0525545095483418
AT3G17700_at 7.31555772245965 7.35817705983667 7.16821708930591 7.19972377729518 6.82406925925434 6.10022136012387 5.68877249256096 5.65415883785285 6.91806198676291 5.9052222760136 5.52217004137191 6.21686717694989 5.42198589693104 5.60628183984967 5.21724137852096 5.70210551029607 5.85734255444045 5.76263909535672 6.40053361966682 0.213590430114494 0.212422699057077 0.202175922119905 0.206521998469335 0.210347388216490 0.212971304832556 0.207079265646091 0.207429880530792 0.217988695855492 0.220354848227245 0.206242726420767 0.207481282823869 0.203846276111814 0.209461518202077 0.204087858783280 0.213016422111786 0.218796418427350 0.202660526649385 0.205920678542967 3 3|0 +|/ 6051891 6052427 6052221.8 6048922 6052556 + gene protein_coding_gene FALSE TRUE AT3G17700.1 CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1); calmodulin binding / cyclic nucleotide binding / ion channel cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels. Identical to Probable cyclic nucleotide-gated ion channel 20, chloroplast precursor (Cyclic nucleotide-binding transporter 1) (CNGC20) [Arabidopsis Thaliana] (GB:Q9LD37); similar to ATCNGC19 (cyclic nucleotide gated channel 19), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G17690.1); similar to Os06g0207700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057101.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); similar to Os02g0773400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048268.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821) -0.212859382057947 -1.91319268574735 0.0823859123143429 1 0.969462740920298 12.6992464402674 -0.212859382057947 0.125743353276075
AT3G59530_at 3.25722143192148 2.87164134420894 2.92505991728945 2.91411103470291 3.33763178115961 2.87181237314069 3.25785082142733 2.82566926182205 3.28359920125407 3.52407910754072 3.44551123766912 2.94388784941719 2.91184693481524 3.19692491480925 3.04422105607748 3.28910866398237 3.56236322172054 2.91219321894531 3.85004646794085 0.219103056969079 0.216150792804766 0.220956056995692 0.216479016866979 0.227929151231708 0.221911674683155 0.225787861539880 0.216010998588182 0.219609026535257 0.216209304766518 0.231051621463318 0.219971420473047 0.216351202840194 0.226830393976417 0.222247477500441 0.216010998588182 0.223660296510442 0.216635252136613 0.219180184184368 3 3 + 22005396 22006109 22005789 22004230 22006238 + gene protein_coding_gene FALSE TRUE AT3G59530.1|AT3G59530.2 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to strictosidine synthase family protein [Brassica napus] (GB:AAX38236.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.215129863335383 -1.91279059572331 0.0824419294143995 1 0.968893622130288 6.39054077708811 -0.215129863335383 0.128639169422542
AT2G03980_at 9.22437058112502 9.58256778588446 8.89923787486263 8.96767998929771 8.97513785209493 9.04458028408638 8.93889449441604 9.20855692866295 8.48109855964889 8.52242686275126 8.29410209096122 8.45873084012664 8.38779894013946 8.50627986007126 8.33843988517648 8.19335775147765 8.36630515130594 8.01997001015407 8.23875808521365 0.151756244931479 0.154952824067117 0.153741419048276 0.151756244931479 0.157452193210423 0.151756244931479 0.163881698000850 0.162570866061186 0.165521370940389 0.153260998190717 0.15676089810848 0.155528767500825 0.159758104975994 0.163560993222938 0.152949987010666 0.155091143743174 0.168786079967782 0.161863042818443 0.151756244931479 2 2 + 1261822 1262346 1262175.182 1259196 1262549 + gene protein_coding_gene FALSE TRUE AT2G03980.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G04020.1); similar to GDSL-like Lipase/Acylhydrolase [Medicago truncatula] (GB:ABE91416.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.180204941899024 -1.91190491681418 0.0825654418571524 1 0.967640220521611 17.4724870081610 -0.180204941899024 0.0794035523417337
AT3G13175_at 2.33491344755263 2.29400154310756 2.35687533909212 2.12222996675446 2.01770818500978 2.30311567108731 2.2611100120194 2.49120413516989 2.69556888041896 2.15243197329742 2.89356703191804 3.28816200111037 2.61125237539595 2.86354887497074 3.00848098211949 2.74156397222276 2.71301689049445 3.02383979129365 2.32694704964477 0.220158661239551 0.218433745222447 0.219648115612882 0.218373698779226 0.217151452472588 0.216336079033694 0.211180929163437 0.211180929163437 0.214916032317795 0.220170130114455 0.217512778523092 0.216478961995489 0.216617046282425 0.214856920641424 0.213520381744433 0.221353181480473 0.225479000382590 0.215106097442794 0.211356004474275 3 3 - 4235278 4235563 4235381.636 4235133 4235731 - gene protein_coding_gene FALSE TRUE AT3G13175.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G16400.1) 0.177977347421921 1.91138261273124 0.0826383599981007 1 0.9669011847051 4.91493393300468 0.177977347421921 0.0756573483325254
AT4G32860_at 1.16402225693972 0.798637093609093 0.761366076610103 0.797158078056671 0.78099606966936 0.580295860396334 0.741464073701313 0.91181668930219 1.26537876148296 1.14562600289484 0.884783885564775 0.513500397494399 0.995177342245748 0.827040976806535 1.05125455326322 0.958720278744107 0.802321214955998 1.29696946132176 0.892118362680717 0.228138243528695 0.228566088908356 0.228084369163645 0.227817367380382 0.222921197429501 0.226753089287171 0.22877040289443 0.231975975399382 0.222921197429501 0.226157631028074 0.224057715869954 0.225696830414912 0.226160958995509 0.230936567842612 0.228035939289926 0.228559466471475 0.232547172200803 0.236734300794078 0.223134470409931 4 4 - 15856808 15857269 15856985 15856615 15857363 - gene protein_coding_gene FALSE TRUE AT4G32860.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78388.1) -0.179425517879115 -1.91127940637064 0.0826527755359372 1 0.966755163283593 1.8256005528618 -0.179425517879115 0.0781793425139524
AT3G12350_at 7.24933518874595 7.41766834976774 7.44662809888374 7.2894092094734 7.548421739684 7.64674679721217 7.66340102261957 7.67178565780341 8.04739784005236 7.87251884631672 7.55261249143668 7.3567375565973 7.68629198884862 8.01913998946513 7.19810795504935 8.03087908389287 7.86876637063312 7.55929692221599 7.98048846749196 0.182532033550435 0.178606999856959 0.191396659915961 0.189428934383161 0.176930227632181 0.193477227781131 0.184808066053266 0.183952354974482 0.189019087131908 0.176915507619352 0.186228721884454 0.181770013977965 0.183595243534189 0.183583365437042 0.182183979184971 0.176661546143956 0.18675351272375 0.184865648548248 0.190282554361555 3 3 + 3932405 3933014 3932799.091 3931571 3933363 + gene protein_coding_gene FALSE TRUE AT3G12350.1 F-box family protein similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99041.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.162784383303566 -1.91083340956511 0.0827150976915792 1 0.966124185914526 15.3045648893843 -0.162784383303566 0.0433645953034367
AT1G15880_at 9.33036651230439 9.46216598316496 9.58956237385386 9.4879245655082 10.1200993878956 9.83717829724013 9.31447040780773 9.08586519353963 9.37289793946952 8.86054548545991 9.11327557382684 8.79429424779987 8.91383440854692 9.13422194551393 8.85907134508949 9.20015941068725 8.94830241849398 9.04279774504128 9.10460476959865 0.120941922288536 0.11744795445085 0.123514408857331 0.121925273229209 0.119129671116875 0.124035434331118 0.124078549616628 0.122393373231625 0.129362988022436 0.12131091403786 0.122413099396782 0.128005084465786 0.123722279310516 0.121271860332485 0.123093587235018 0.120280515720066 0.124906596838606 0.125831554703616 0.124232656133277 1 1|0 -|/ 5458745 5459656 5459156.222 5458529 5460327 - gene protein_coding_gene FALSE TRUE AT1G15880.1 GOS11 (GOLGI SNARE 11); SNARE binding Golgi SNARE 11 protein (GOS11) Identical to Golgi SNARE 11 protein (AtGOS11) (Golgi SNAP receptor complex member 1-1) (GOS11) [Arabidopsis Thaliana] (GB:Q9LMP7); similar to GOS12 (GOLGI SNARE 12), SNARE binding [Arabidopsis thaliana] (TAIR:AT2G45200.1); similar to Os08g0440000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061900.1); similar to hypothetical protein [Cicer arietinum] (GB:CAB71130.1); similar to Os09g0416700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063180.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.174268018642924 1.90966511337273 0.0828785576247962 1 0.964471644287224 18.5851677743565 0.174268018642924 0.0692231703728795
AT1G75820_at 9.5148816070309 9.7757699334615 9.3613086956842 9.40924409290245 10.2908175009777 10.1522698126044 10.1162769335664 10.2548372361308 10.0146048925022 9.8056465860049 9.82490503653667 10.0008957116292 9.7944476335864 9.80779727154254 9.51206549149316 9.74193284407188 9.23529340466505 9.7079183891465 9.96267314818983 0.0863139122573456 0.082427877956324 0.084422249455729 0.0888533168071076 0.085728178527201 0.0945596002258606 0.086542213644161 0.0850675654734887 0.0918949619803413 0.0839808283097907 0.0813048188706346 0.0809462503580832 0.0828093385065946 0.0842545794370794 0.0920710321500039 0.0835318996839757 0.108692559661535 0.087870459093263 0.0859786438032678 1 1|0 -|/ 28467303 28467868 28467550.8 28467123 28470632 - gene protein_coding_gene FALSE TRUE AT1G75820.1 CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). Identical to Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1) (CLV1) [Arabidopsis Thaliana] (GB:Q9SYQ8;GB:O04380;GB:Q9LQT2); similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to BAM3 (big apical meristem 3), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G20270.1); similar to LRR receptor-like kinase [Glycine max] (GB:BAC41332.1); similar to receptor protein kinase-like protein [Glycine max] (GB:AAF59906.1); similar to CLV1-like receptor kinase [Brassica napus] (GB:AAP49010.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.168257985701806 -1.90963312716289 0.0828830371106398 1 0.964426406560904 19.6748249840779 -0.168257985701806 0.0570699912161817
AT3G15630_at 7.61645333539739 8.11030118452716 4.07549178119028 4.72597912217359 7.99136443678058 7.8788152177167 3.09896052432795 3.57150994954654 5.55517114864401 4.01529679126474 5.21517698441964 5.47810173028496 4.37390875551376 4.30925998855254 4.40759075079139 4.24243580053839 4.03757160404026 4.30537445782721 4.30183214059557 0.273646286823862 0.267876305724623 0.256180657976175 0.256259844294121 0.272469452782207 0.276551432312875 0.255716982803769 0.257596815949606 0.259584465713853 0.259586473757999 0.256281986038185 0.253638353940039 0.255474696561605 0.258454920881116 0.258459719947948 0.251501482725671 0.259541273579652 0.257087287243717 0.251501482725671 3 3 - 5297199 5297452 5297328.909 5296854 5297606 - gene protein_coding_gene FALSE TRUE AT3G15630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52720.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92597.1) 0.245341936588384 1.90956661791387 0.0828923520671787 1 0.96433234439290 10.4687482118729 0.245341936588384 0.164446533039645
AT1G29680_at 1.00402816985052 1.14453884798827 1.26192494402137 1.07559638221419 1.38434453392717 0.788102882648154 1.66545640517651 1.43900244358064 1.81771475829357 1.79249179691265 1.09031817965014 1.17359341675828 1.78439543455671 1.61643804376961 1.18595068703300 1.40007198367447 1.44311826161310 1.49415920344347 1.26422349482570 0.178257513627039 0.170192126015693 0.167573185259998 0.168844347799375 0.170795086954937 0.173704522951504 0.174448549672733 0.176814434807062 0.174635202684741 0.179847089194891 0.174526159848652 0.167224182959257 0.170133454623430 0.172162557276208 0.170437331893886 0.168884948801237 0.173493760164816 0.176414494016537 0.174415291895726 1 1 - 10377891 10378778 10378419.455 10377776 10378947 - gene protein_coding_gene FALSE TRUE AT1G29680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45690.1); similar to Os01g0749000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044244.1); similar to Os01g0728700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044131.1); similar to hypothetical protein BdolA_01005253 [Burkholderia dolosa AUO158] (GB:ZP_00983019.1); contains InterPro domain Protein of unknown function DUF1264; (InterPro:IPR010686) -0.206034323155612 -1.90936117025559 0.082921132161368 1 0.964041794847903 2.73203216017068 -0.206034323155612 0.117530376184045
AT1G32480_at 1.60830123972698 1.82967667887618 1.78408822281917 2.10990135370933 2.11032595689434 2.20343731747668 1.93089460041524 1.78943259268434 1.59391920232045 1.79528691518124 1.87492205792609 1.73118728980495 2.06586601266542 1.62848932374375 1.9890138035691 2.04323409197007 2.53297149722697 2.10640446553781 2.32568248127974 0.218338351144267 0.222857272937077 0.228341771221229 0.223455430599033 0.233040266954354 0.223013845250395 0.230162965844021 0.221633764875785 0.22206373714329 0.22312772889305 0.221630345916077 0.218338351144267 0.22906562854138 0.218847703533631 0.226533728967307 0.218338351144267 0.228229857759357 0.228416367029161 0.22873912304448 1 1 + 11741394 11741874 11741648.7 11741063 11741970 + gene protein_coding_gene FALSE TRUE AT1G32480.1 oxidoreductase Identical to Putative isocitrate dehydrogenase [NAD] subunit-like 4 (Isocitric dehydrogenase-like protein 4) (NAD(+)-specific ICDH 4) (IDH-IV) (IDH4) [Arabidopsis Thaliana] (GB:Q9LQK9;GB:Q1PFP9); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.176955068172119 1.90926151091809 0.0829350962460318 1 0.963900859035827 3.87149421235828 0.176955068172119 0.0742004047296802
AT3G04540_at 1.25122280138719 1.54842265767340 1.20047586563466 1.38533711710002 0.979796684724023 1.30244258948574 1.51557949549564 1.42216513712373 1.85870286727177 1.54147854277539 1.31514725260191 1.56498889894224 1.05314343285891 1.60035933345385 1.64874448717015 1.18064883788379 1.25425964226844 1.71845543588929 1.29486879455861 0.229768610710163 0.228356828128669 0.223357375511566 0.224598997052077 0.223357375511566 0.231459367716346 0.223357375511566 0.228308168654758 0.236203597209591 0.234819070998839 0.228298379561299 0.223357375511566 0.234930732811756 0.233080702769377 0.229374768544755 0.228508384797863 0.223357375511566 0.234599093269897 0.227908040055261 3 3|0 +|/ 1223357 1223696 1223575.75 1223356 1223720 + gene protein_coding_gene FALSE TRUE AT3G04540.1 Encodes a defensin-like (DEFL) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32763.1); contains domain Scorpion toxin-like (SSF57095) -0.182691389209449 -1.90917181536742 0.08294766608132 1 0.963774016603964 2.81667286857913 -0.182691389209449 0.083949896382539
AT4G02640_at 7.9157172317701 8.30802649038791 7.94890555307288 8.0812450100245 8.21334525621 8.03473979679254 7.74893371272926 7.91091439961641 7.39576048146373 7.31086454180233 6.54787782638518 6.80068882768811 7.08208112608798 6.96056039288756 6.44158542741095 7.55083975350378 6.8842079125829 7.07322230941008 7.43457453896396 0.207228854957267 0.203593407299513 0.208530994341472 0.207760506739924 0.204665477565400 0.208812598551508 0.205546512196712 0.208006450616485 0.208193775987799 0.203777512567333 0.203913444134932 0.204231518205537 0.202414603745253 0.203350340317920 0.205224409177004 0.19984521000667 0.214697315586153 0.206922636426215 0.209663147757814 4 4|0 +|/ 1155396 1155908 1155734.9 1153997 1156320 + gene protein_coding_gene FALSE TRUE AT4G02640.1|AT4G02640.2 BZO2H1 (basic leucine zipper O2 homolog 1); DNA binding / sequence-specific DNA binding / transcription factor|BZO2H1 (basic leucine zipper O2 homolog 1); DNA binding / transcription factor Encodes bZIP protein BZO2H1. similar to BZO2H4 (basic leucine zipper O2 homolog 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54620.1); similar to bZIP transcription factor bZIP89 [Glycine max] (GB:ABI34655.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.182052980841523 -1.90913394122798 0.082952974250023 1 0.963720457920532 15.1692448318611 -0.182052980841523 0.0829143053819828
AT3G02060_at 6.44992331654766 6.9530672903421 6.79852378002343 6.54348129291045 7.20486664437411 6.54695056985718 7.81080782904076 7.49810198304971 4.33386441295698 5.65998123805671 4.77217853327371 5.02003954882969 5.23585752984128 5.3404634694592 4.96363466540283 5.88602457071493 5.89069292986192 4.43301257471244 5.81551347073238 0.287100419358794 0.287624721601036 0.287041007322783 0.279219638072163 0.279219638072163 0.287934565512746 0.286573434525128 0.284355724197258 0.296565017452593 0.279219638072163 0.293775249115471 0.279219638072163 0.281474382660212 0.286233839889111 0.283668471493388 0.279219638072163 0.295412279610888 0.301924733544378 0.281840474395682 3 3|0 +|/ 357347 358286 357906.4 354367 358840 + gene protein_coding_gene FALSE TRUE AT3G02060.1|AT3G02060.2 DEAD/DEAH box helicase, putative similar to ATP-dependent DNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G01440.1); similar to DEAD/DEAH box helicase [Medicago truncatula] (GB:ABD33152.1); similar to CarD-like transcriptional regulator family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94063.2); similar to CarD-like transcriptional regulator family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94062.2); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Transcription factor CarD; (InterPro:IPR003711); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.24078396455356 -1.90887675701587 0.082989027655924 1 0.963356780537346 12.2069775141069 -0.24078396455356 0.159439520534422
AT3G44240_at 1.02132512199345 0.995426555116369 1.13063378896646 0.924229340647913 0.714435547079742 0.984305069294428 1.04908231304993 1.13290861456510 1.26877012634030 1.12937549617483 0.631069980150328 0.964330906923265 1.16109200025280 0.934903789567919 0.98051672000058 1.21311916729118 1.35774460043925 1.37723717553278 1.51975375147722 0.197410094373357 0.188650460485706 0.193703320218596 0.189968195911214 0.191264909191788 0.193670886654383 0.200746051397539 0.188066961218525 0.201785213859195 0.205731498187778 0.193472353694385 0.188066961218525 0.196457110583321 0.194729950563539 0.194051746944895 0.188335328262926 0.190154777440702 0.195699322814703 0.197694909326798 3 3 + 15951323 15951804 15951606.818 15951171 15951890 + gene protein_coding_gene FALSE TRUE AT3G44240.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G61470.1); similar to hypothetical protein DDBDRAFT_0185899 [Dictyostelium discoideum AX4] (GB:XP_638651.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.169874690080882 -1.90862635107436 0.0830241447625027 1 0.963002709354337 2.18577741909778 -0.169874690080882 0.0607246669751174
AT4G12470_at 9.3709851890689 10.0135070413611 4.73704170723503 4.77245820368043 8.70519071875026 8.7148672625753 3.84286554566754 4.45213698862472 3.06748429925758 4.53039374947654 3.25599266086454 2.70724209035455 3.54641027367468 3.70468252435575 3.03617535062243 2.85993655666189 3.16716419956416 2.58907589996259 2.5770068711578 0.303812394490199 0.301182201882161 0.290629315084979 0.299286975666258 0.30096150340904 0.300842716721141 0.295708410349702 0.291512912000270 0.290332519546600 0.310638071355404 0.290332519546600 0.290332519546600 0.290332519546600 0.291956674609292 0.295770576138241 0.294411877246909 0.310584036891646 0.293265908307244 0.296909847125545 4 4 - 7401371 7401773 7401564.545 7401106 7401904 - gene protein_coding_gene FALSE TRUE AT4G12470.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1, lipid binding [Arabidopsis thaliana] (TAIR:AT4G12480.1); similar to HyPRP [Fragaria x ananassa] (GB:AAD01800.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.235388790121688 -1.90846473366205 0.0830468173943348 1 0.962774195276516 10.0761132076895 -0.235388790121688 0.153365294741539
AT3G52030_at 7.26217520644183 7.19767146629968 7.66663637722424 7.35846554873831 7.91690139450947 7.32562814224197 7.71754122384448 7.48090204804701 7.27510466800314 7.44772933729121 7.03527142494238 6.83861521469412 6.95860687724536 7.00433185716909 6.54520504082847 7.16246228978637 6.85798273334843 6.95245809019202 7.75192340861559 0.188702204562403 0.189207795348394 0.186873070832651 0.187009170903006 0.185423320026573 0.199948295953851 0.190412692146459 0.184826807972683 0.194868351135189 0.184302186893948 0.185164440222780 0.180123089802640 0.181968898335753 0.193589323712758 0.191122265021659 0.179706856085824 0.185138826535754 0.186036937984938 0.187111107976315 3 3 + 19314508 19315145 19314754.364 19312850 19315205 + gene protein_coding_gene FALSE TRUE AT3G52030.1 F-box family protein / WD-40 repeat family protein similar to Os11g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065906.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.209941867045308 -1.90677048340421 0.0832848412961624 1 0.960379186834985 14.6962164237496 -0.209941867045308 0.122945827008893
AT4G11740_at 7.68573455719498 7.30000082542098 7.92645201416297 7.92837749042468 7.74322183327037 7.34511341258495 7.08925767980194 7.0664598608552 7.43823701499342 7.312705519491 7.20197440468539 6.8831040179198 7.03885471474007 7.38960858951491 7.00161120334278 7.39522477592573 7.07342100556414 6.90351114641924 6.79192954069943 0.186259552690356 0.177999690212036 0.189777840660207 0.188363711439573 0.182844317434430 0.195359422612648 0.183306917373828 0.178720471794780 0.21238189004174 0.184313737073917 0.184971656094909 0.184181612791424 0.190422375534113 0.185203284986642 0.183714830030571 0.179288261968859 0.197226334630538 0.196730835607441 0.183467597850364 4 4|0 +|/ 7073971 7075226 7074517.222 7071854 7075495 + gene protein_coding_gene FALSE TRUE AT4G11740.1 SAY1 Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein. similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to Os08g0546400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062421.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46494.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.190192165330924 1.90623939529756 0.0833595831136138 1 0.95962863339396 14.6565127545438 0.190192165330924 0.0960109200094799
AT1G50370_at 9.61902630636806 9.62144716283869 9.74752147442608 9.7515127660254 9.57676076315134 9.73445054060555 9.52992726491969 9.82513728576246 8.60027903270478 8.6632419660615 9.09003285783116 8.91004993865498 9.29115989169459 8.85707015248538 8.73496339571555 9.1392220133312 9.20221585520415 8.6575042686402 8.84327540501133 0.166082279908767 0.163576422601358 0.166253686892748 0.171105468844876 0.165677869076327 0.169532717705889 0.163882437273723 0.163931374528943 0.180684563684051 0.178910605589256 0.178449030067512 0.174634062969871 0.165670447523662 0.169105451987803 0.175852696664800 0.166557259747897 0.173674881440779 0.178346674369864 0.172409160219785 1 1|0 +|/ 18664101 18665315 18664579.444 18662315 18665642 + gene protein_coding_gene FALSE TRUE AT1G50370.1 serine/threonine protein phosphatase, putative similar to ATFYPP3 (SERINE/THREONINE PROTEIN PHOSPHATASE), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G19980.1); similar to Ser/Thr protein phosphatase homologous to PPX [Malus x domestica] (GB:CAA87385.1); similar to serine/threonine protein phosphatase 2A [Pisum sativum] (GB:AAM21172.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.168344354924328 1.90618286529561 0.0833675424191183 1 0.959548748660379 18.5194943278224 0.168344354924328 0.0579246851310867
AT1G06380_at 3.64977830851141 4.13332295169051 3.43782285493161 3.54117508060219 3.15895860970352 2.88895545332051 3.5105499784751 3.96959564827698 2.46702022619253 2.96864563945933 2.82700982703179 3.01384598031110 2.93521970588712 2.95178452220009 3.1731524252823 3.17159692140976 2.94575238999118 2.92589450140540 3.13856463965366 0.212713035490478 0.209749963769257 0.206800619872450 0.209198657400203 0.206192661372239 0.222152388907366 0.207696167402436 0.209507290278823 0.206814238950591 0.205284223205006 0.204906975881757 0.208542000920675 0.211575827068135 0.207853164453863 0.206757192864386 0.204906975881757 0.211941043879035 0.204906975881757 0.215454279759641 1 1 + 1945299 1945849 1945546.727 1945123 1946075 + gene protein_coding_gene FALSE TRUE AT1G06380.1 ribosomal protein-related similar to 60S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT2G42650.1); similar to 60S ribosomal protein-related (ISS) [Ostreococcus tauri] (GB:CAL54265.1); similar to Os05g0558000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056294.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.212064261505519 -1.90591153665438 0.0834057546946387 1 0.959165338565214 6.46182429533482 -0.212064261505519 0.125762258794739
AT1G48760_at 4.46403435334869 5.02251102009191 4.39959325546652 4.39673821048804 4.65665945879948 4.4971852032214 4.62692299257811 4.31456778953388 5.53772027990352 5.66958004800681 5.54197537204052 5.64914820691619 4.95889961854935 4.94759699144064 5.1395440691247 5.59318121210793 5.200899022196 5.41859433339031 5.57123453825677 0.191093346625983 0.198448428948007 0.201390934734269 0.191186623064981 0.191995410216760 0.198751497351877 0.195828407315030 0.190693120501323 0.205351605334693 0.199499457079397 0.199775993183080 0.20253742682129 0.197139914560123 0.201251993892434 0.190693120501323 0.195451218861078 0.202357389616139 0.191404813213968 0.200677905766062 1 1 - 18040542 18040856 18040712 18039635 18043073 - gene protein_coding_gene FALSE TRUE AT1G48760.1|AT1G48760.2|AT1G48760.3 DELTA-ADR (DELTA-ADAPTIN); clathrin binding similar to clathrin binding [Arabidopsis thaliana] (TAIR:AT1G60070.1); similar to Adaptin, N-terminal [Medicago truncatula] (GB:ABE78888.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.203040054531304 -1.90549379390514 0.0834646186766057 1 0.95857508133043 9.99681393974587 -0.203040054531304 0.114124551852597
AT4G17980_at 1.24752726866721 1.28256938043196 1.09140271858993 1.94930441123106 0.758451211883077 1.34573802507691 1.61694581059816 1.43002600061192 1.55753378055852 1.91246704097667 1.51307864695087 1.11292801919773 1.54229520541143 1.51265374187684 1.25945194262006 1.59615461267254 1.07366294393379 1.27658508922156 1.85830485422594 0.22355411743851 0.212472090000473 0.219160174169992 0.225727050991672 0.216064052182330 0.216879135759167 0.217092590462029 0.213249621533834 0.216278686027353 0.225323847826161 0.21514133034695 0.217097042876385 0.214826608068273 0.215669893903498 0.221864431716256 0.215650786270757 0.220854301919956 0.221178471100873 0.216705977624931 4 4|0 -|/ 9979055 9979708 9979359.5 9978862 9980050 - gene protein_coding_gene FALSE TRUE AT4G17980.1 ANAC071 (Arabidopsis NAC domain containing protein 71); transcription factor similar to ANAC096 (Arabidopsis NAC domain containing protein 96), transcription factor [Arabidopsis thaliana] (TAIR:AT5G46590.1); similar to nam-like protein 11 [Petunia x hybrida] (GB:AAM34774.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.26164682003342 -1.90501397132605 0.0835322776582861 1 0.957897179504463 2.90872218696427 -0.26164682003342 0.182903968724926
AT3G43330_at 0.733851885446941 -0.18140627236271 0.958417621776913 0.0207777157081008 0.617567570448588 0.635839531819732 0.276734410758474 0.108709015816825 0.524096424686439 0.64199737686843 0.990346322878934 0.721956360634327 1.69498407699325 0.511766904322601 0.767246422902991 0.170021786137166 1.14618038791334 -0.0640530159994315 0.197241033024114 0.384143766376108 0.368695066704932 0.396178545437050 0.368695066704932 0.368695066704932 0.406688914464547 0.368695066704932 0.388444953998443 0.39383893509552 0.401396806212179 0.368695066704932 0.395931819037789 0.368695066704932 0.368695066704932 0.368695066704932 0.388216380811238 0.368695066704932 0.368695066704932 0.368695066704932 3 3 + 15292278 15292695 15292492 15290335 15292896 + gene protein_coding_gene FALSE TRUE AT3G43330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains domain HELICASE-RELATED (PTHR10492) 0.305769780443343 1.90431218611618 0.0836313264590076 1 0.956905824128956 0.994686985217887 0.305769780443343 0.228630852384807
AT3G08910_at 2.94358013087469 2.83230742158097 2.73305604459381 2.67072300877529 2.85096001482752 2.89149013597858 2.67842133605007 2.83756185572092 2.89978412374147 2.69979968178388 3.38557961484435 3.19297349524157 3.38835998149809 3.38517649483485 3.04725796086284 2.89414424348451 2.59138037009565 2.87777160604344 2.61862514231228 0.217287563769468 0.213024519505359 0.221916702652155 0.211964792500086 0.209536752373729 0.216508027719763 0.218125241892775 0.216659598893474 0.217060556330502 0.214358837260759 0.213316988052538 0.215208833260212 0.210834670349903 0.213047488438612 0.214580858176780 0.208820090431421 0.209866283447421 0.217310166357588 0.215787194716292 3 3|0 -|/ 2710457 2711222 2710718.667 2710160 2711898 - gene protein_coding_gene FALSE TRUE AT3G08910.1 DNAJ heat shock protein, putative similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT5G01390.1); similar to DnaJ-like protein [Nicotiana tabacum] (GB:AAF05720.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.159758551618880 1.90376643440689 0.0837084279179088 1 0.956134999055505 5.72212922028809 0.159758551618880 0.0359834784665338
AT3G66656_at 1.69228217293828 1.25524466809734 1.54643474877317 1.77767642959753 1.37389337289191 1.09853616252192 1.689183913032 1.57635309298008 1.78696236052908 2.14076510741629 1.26513441642376 1.37028928746787 1.53794455124985 1.54445499947003 1.54615016380733 1.51552020949054 1.93736785383049 1.78675198035817 1.60418416966651 0.180633987224893 0.188176647689247 0.191124185449117 0.192515756463887 0.195441075594556 0.194315502013658 0.195027627312669 0.184900312400709 0.187366733644646 0.184237824639431 0.190446189700651 0.181954121004872 0.187818664322574 0.180556222600499 0.190088461624736 0.188014307983402 0.185814597449155 0.191148993822485 0.185265829615385 3 3 - 2091274 2091726 2091497.818 2091268 2091804 - gene protein_coding_gene FALSE TRUE AT3G66656.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT2G34440.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE85433.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.192574823212080 -1.90375097579273 0.0837106128003446 1 0.956113166615025 3.20466168442047 -0.192574823212080 0.0998672185213131
AT3G52190_at 6.36732207342393 6.19359160326422 5.81420053748108 6.06393576333505 5.45110173364378 5.46651909327151 5.67210102131423 5.92103026624063 4.65905115924898 4.80411185518518 4.64912687838299 5.01651240125629 4.84275840886564 4.78738892946602 4.6503102958616 4.65958491326135 4.8412125776235 4.1228809744784 4.64524136184653 0.23671818364909 0.236091151268026 0.230442870650362 0.230442870650362 0.230442870650362 0.242136820845232 0.230442870650362 0.233678593415779 0.233646066498944 0.230442870650362 0.231562114092072 0.231596185132436 0.234798223525085 0.234882413687086 0.230442870650362 0.232647836655332 0.230442870650362 0.243509966746349 0.234904318626657 3 3|0 -|/ 19365116 19366002 19365464.4 19364950 19368052 - gene protein_coding_gene FALSE TRUE AT3G52190.1 PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. Identical to Sec12-like protein 1 (Protein PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1) (PHF-1) (PHF1) [Arabidopsis Thaliana] (GB:Q8GYE0;GB:Q9SUY6); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50650.1); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50550.1); similar to STL2P (SEC12P-LIKE PROTEIN), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G01470.1); similar to Os07g0187700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059077.1); similar to putative membrane protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37546.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.173075747744325 -1.90321940663612 0.0837857755258401 1 0.955362472142281 10.5682369520767 -0.173075747744325 0.0680774751545996
AT4G22756_at 4.640042508749 5.22673832396173 4.63828533781951 4.7193826221524 5.47266059610246 4.83841590038255 6.0402235507291 6.31098898004712 5.33711367622212 5.95839297692439 5.74059353932757 6.47441982901951 5.53996668020166 5.92589843638847 6.6182802496585 5.74430694619725 5.18926296877426 6.02987739247439 5.94492144533332 0.236439359937962 0.237974092520123 0.241135338228128 0.238674169664701 0.238248822168045 0.246998908536683 0.234739431232260 0.238737219252306 0.251158734284401 0.242860123896234 0.236146873941755 0.23432628951198 0.241485226719167 0.247977845546847 0.239990500825325 0.233154779120786 0.247447735544991 0.237911358453352 0.259338417851347 4 4 - 11955363 11956173 11955782.182 11954854 11956824 - gene protein_coding_gene FALSE TRUE AT4G22756.1 SMO1-2 (STEROL C4-METHYL OXIDASE); catalytic Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase. similar to SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1), catalytic [Arabidopsis thaliana] (TAIR:AT4G12110.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABE87434.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) -0.238147918831126 -1.90282877075115 0.083841050315612 1 0.954810867545056 11.0631597882006 -0.238147918831126 0.157315065947855
AT1G64040_at 9.82985675111449 10.0098279108405 9.99887586465123 10.0568069021465 10.3465755805267 10.1447189468256 9.7249753213333 9.87278687348036 9.70101317488005 9.54113095319394 9.71756431676162 9.51941865620603 9.84703064246335 9.64321036738943 9.54824713135714 9.78458332011332 9.52503341896494 9.79926308506538 9.6108728992784 0.0917326453145548 0.0921987751339687 0.0936356237147554 0.0924702776777382 0.0910224867952664 0.0935970397936136 0.0910224867952664 0.0961874378239073 0.110992401780381 0.0923677764288892 0.0964199695389238 0.0916053977676034 0.0941842101418313 0.0942216503257827 0.094304535407725 0.0914884026521366 0.101002374888101 0.095388365362376 0.0910224867952664 1 1 - 23762473 23763014 23762797.091 23761946 23764221 - gene protein_coding_gene FALSE TRUE AT1G64040.1 TOPP3 (Type one serine/threonine protein phosphatase 3); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) (TOPP3) [Arabidopsis Thaliana] (GB:P48483;GB:Q9SH54); similar to TOPP7 (Type one serine/threonine protein phosphatase 7), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT4G11240.1); similar to Serine/threonine-protein phosphatase PP1 (GB:P48488); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.16637706709235 1.90238644641744 0.0839036796464188 1 0.954186337327775 19.6434111237353 0.16637706709235 0.0542685682026595
AT1G50950_at 2.69283033503001 2.20887744165229 2.88403443398364 2.43300834927866 3.42450333517073 2.50607234431508 2.24222917426544 2.1460426568745 2.15772897467446 2.19549688783271 1.91334079292896 1.85717130818088 1.93537727409544 2.25313503324971 1.60339873870770 2.27593100778146 2.57298484703804 1.91137377229221 1.5914782490253 0.19640078901152 0.197298540380524 0.203185781531711 0.205607502171988 0.198879801813759 0.202317205915807 0.196901201306573 0.200470642279800 0.200351677786564 0.195817862347831 0.200568842539315 0.200042944823886 0.203168911638932 0.197783731760404 0.204511339777608 0.196525936537254 0.204802024382303 0.198054745004327 0.199704231504194 1 0|1 /|+ 18886898 18887491 18887168 18883988 18887893 + gene protein_coding_gene FALSE TRUE AT1G50950.1 thioredoxin-related similar to ATPDIL5-4 (PDI-LIKE 5-4), electron carrier/ protein disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G27080.1); similar to ATPDIL5-3 (PDI-LIKE 5-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G20560.1); similar to Thioredoxin, putative [Medicago truncatula] (GB:ABE91160.1); similar to Os07g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059821.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) 0.274090386669141 1.90174197164565 0.0839950090721154 1 0.953276503147649 4.57815332580219 0.274090386669141 0.196582958173740
AT3G43760_at 1.89016847578274 1.64656532070143 1.7180902894579 1.72342924237733 1.35968224436777 1.79653118903758 1.41536609868380 1.51258392106501 2.17658078366591 1.82044493725347 1.77734462523528 1.58546135814524 1.50307616272298 1.57201569493165 1.49186240384115 1.30937670486421 1.6248863222258 2.11664643454138 2.07806012659277 0.210672187165127 0.210672187165127 0.212269183036434 0.220197156884331 0.215879459305299 0.210672187165127 0.213217842226648 0.213387966842466 0.214451916358863 0.214404816348173 0.210672187165127 0.210800252834343 0.219461107470778 0.210672187165127 0.213189584714130 0.21671939757901 0.213778611306486 0.215653571572253 0.210961758530688 3 3 - 15659206 15659795 15659549.364 15659200 15660409 - gene protein_coding_gene FALSE TRUE AT3G43760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.184591307636011 -1.90141582284283 0.0840412630483888 1 0.95281611747478 3.45660826225962 -0.184591307636011 0.0881830782446617
AT4G20310_at 2.88431601845429 2.87146739568068 3.20673275055210 3.25408672787009 4.48574665586203 3.25792504895149 3.70760352101454 3.52681858439002 2.51809662472193 3.15237002687681 2.80595228077675 3.39464271971714 2.99298356196362 2.84660340416333 3.23869156255743 3.23882523148804 3.38940900638472 2.84482578798747 2.7717169453576 0.201071991738825 0.199973335243387 0.206633721121853 0.208403940712241 0.222162552505899 0.216540908075330 0.207782972451073 0.198350126323084 0.20533431404584 0.221497727743730 0.203873906439358 0.209960756057949 0.203637758565002 0.198350126323084 0.209350317661523 0.208707493134297 0.213714750370100 0.199750515450528 0.198350126323084 4 4|0 +|/ 10962351 10962906 10962695.375 10961624 10963958 + gene protein_coding_gene FALSE TRUE AT4G20310.1 metalloendopeptidase/ protein binding similar to PREDICTED: similar to S2P [Strongylocentrotus purpuratus] (GB:XP_787875.2); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase M50; (InterPro:IPR008915); contains InterPro domain Peptidase M50, mammalian sterol-regulatory element binding protein; (InterPro:IPR001193) 0.291750955659206 1.90118542918440 0.0840739513334574 1 0.952490919625368 6.35336353452953 0.291750955659206 0.214938948737422
AT2G45490_at 1.01829946792209 0.503004540044602 1.32966767518226 1.17382767612555 1.06077431390235 1.02427306400809 0.588009735904971 1.01455072976216 0.716874039352477 0.956731304824421 0.80522787152209 0.710303588444492 0.920957712905911 1.10327373746090 1.19242509271418 0.83865270275087 0.905669407888154 1.38451093291703 1.13505022088662 0.196506680585092 0.186022983026763 0.191384398859099 0.189948902726824 0.18967743854109 0.190386369954704 0.20365446421899 0.190053423994475 0.193603577249444 0.203847441696525 0.199217519414581 0.197720437974654 0.205007642692647 0.187175790346851 0.189140342685547 0.187029134620439 0.190220746542784 0.187980817923855 0.19432530396903 2 2|0 -|/ 18754804 18755683 18755184.111 18754713 18756149 - gene protein_coding_gene FALSE TRUE AT2G45490.1 ATAUR3 (ATAURORA3); ATP binding / histone serine kinase(H3-S10 specific) / protein kinase Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells. Identical to Serine/threonine-protein kinase Aurora-3 (EC 2.7.11.1) (AtAur3) (Aurora-like kinase 3) (AUR3) [Arabidopsis Thaliana] (GB:O64629); similar to ATAUR1 (ATAURORA1), histone serine kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G32830.1); similar to Protein kinase [Medicago truncatula] (GB:ABE85513.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.206289336516861 1.90111539229231 0.0840838905039265 1 0.952392066951328 1.92347397661316 0.206289336516861 0.119028971437215
AT2G25370_at 0.964610707348432 0.895291094998926 0.610333701743053 0.898691787010586 0.607471915273002 0.520501003182201 0.460638497756871 0.70234782876189 0.695795896405726 1.17797160054875 1.20678984534306 0.402747790108812 0.503164597397467 0.78554953021224 0.598522750917086 0.715525546685415 0.87427767325991 0.693710617221537 1.04113441344474 0.180555200376514 0.180374908388000 0.181877489699309 0.189307264015861 0.184747387155939 0.186543392300408 0.186186530109726 0.181595164440585 0.185233121964497 0.183806695132387 0.184724572620556 0.188126780694451 0.184620735151784 0.182518091085079 0.182955187833417 0.185275427826682 0.194880421540591 0.188770309392169 0.186735701935951 2 2 + 10816003 10816727 10816298.1 10813779 10816873 + gene protein_coding_gene FALSE TRUE AT2G25370.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G25360.1); similar to Zinc finger, RING-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85921.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.172785178327099 -1.90105002832507 0.0840931675025607 1 0.952299811309842 1.5545708240225 -0.172785178327099 0.0678989702871035
AT1G05710_at 3.95456128059009 3.90818890820816 3.26431581595662 3.72234701341855 3.50625898863699 2.78990458340528 1.52447356404611 1.47425288258778 2.10777938863797 2.23862092968139 1.89244047121719 1.30389749182823 2.10315900812656 2.27823703220045 1.68970452915165 2.15205771557063 1.75980109589001 2.35849038688942 1.91983177355762 0.217229052868612 0.218239003298688 0.218427784427472 0.228350465872743 0.207908381940487 0.210545749656176 0.205620107000415 0.20907242686358 0.212139744460449 0.206442936694171 0.202692778654982 0.210221915421180 0.208372106225409 0.202405301630532 0.207065916968253 0.201894581114132 0.211834368761368 0.210108968892671 0.201894581114132 1 1|0 +|/ 1716233 1716990 1716611.444 1714949 1717274 + gene protein_coding_gene FALSE TRUE AT1G05710.1|AT1G05710.2|AT1G05710.3|AT1G05710.4 ethylene-responsive protein, putative similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G31730.1); similar to ER33 protein [Lycopersicon esculentum] (GB:AAD46413.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.229408438614965 1.90011785304426 0.0842255724503878 1 0.950984282638649 5.03352162809866 0.229408438614965 0.147617629149906
AT1G24140_at 4.60065141311048 5.25908811272233 6.32681298713366 6.95321173988416 4.61098511163427 4.80958889590056 4.08071829238944 4.54443388360957 4.27180636499669 2.75818981669793 2.78408128645377 3.31886185477860 2.59677104315788 2.96050304071583 2.65592547515591 2.22894466402995 2.78032156084567 3.23907315790683 3.04491111919158 0.282256391107954 0.284923275061356 0.283895199958578 0.288793583639249 0.282767475085837 0.295506469142201 0.279733157242205 0.292428266242691 0.294960541116549 0.279733157242205 0.279733157242205 0.280489058204027 0.285899067606097 0.279733157242205 0.281983851048815 0.295209433986549 0.283425164122215 0.279733157242205 0.285789964130487 1 1 - 8536212 8536647 8536421.545 8536034 8537376 - gene protein_coding_gene FALSE TRUE AT1G24140.1 matrixin family protein similar to MMP (MATRIX METALLOPROTEINASE), metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT1G70170.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Peptidase, metallopeptidases [Medicago truncatula] (GB:ABE90189.1); contains InterPro domain Peptidase M10A and M12B, matrixin and adamalysin; (InterPro:IPR001818); contains InterPro domain Peptidase M, neutral zinc metallopeptidases, zinc-binding site; (InterPro:IPR006025); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidase, metallopeptidases; (InterPro:IPR006026); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) 0.258092292466017 1.89957462862956 0.0843028200518891 1 0.950217794656035 8.2376176515527 0.258092292466017 0.179876142437228
AT4G35800_at 6.11570667393378 6.03155608369004 5.77621651111988 5.76392000352942 7.01937250406240 6.64525104351817 5.86592835133191 5.10880883338009 6.53561593268041 5.99311586725552 6.24675086799283 5.59776786588529 6.50231766515818 6.13459862811634 6.1873728901728 7.0683636475804 6.48801541263266 5.9045854452508 6.4597313323211 0.197058344545486 0.208272631491707 0.194019721355466 0.195352313020195 0.194019721355466 0.200646159990133 0.194033183306083 0.200242914966785 0.202848142752276 0.194019721355466 0.199539353952847 0.214208805537062 0.206863880643075 0.213180744987151 0.195845326827158 0.194019721355466 0.194019721355466 0.194019721355466 0.200146951119027 4 4|0 -|/ 16961177 16961717 16961513.3 16960661 16967896 - gene protein_coding_gene FALSE TRUE AT4G35800.1 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase Encodes a large subunit of RNA polymerase II (aka RNA polymerase B). Identical to DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB205) [Arabidopsis Thaliana] (GB:P18616;GB:P31635;GB:Q9SZS8); similar to NRPC1 (nuclear RNA polymerase C 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G60040.1); similar to RNA polymerase II largest subunit [Dictyostelium discoideum AX4] (GB:XP_641735.1); similar to DNA-dependent RNA polymerase II largest subunit [Glaucocystis nostochinearum] (GB:ABA64469.1); similar to putative RNA polymerase II [Oryza sativa (japonica cultivar-group)] (GB:AAV32202.1); contains InterPro domain RNA polymerase Rpb1, domain 7; (InterPro:IPR007073); contains InterPro domain RNA polymerase Rpb1, domain 6; (InterPro:IPR007075); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro domain RNA polymerase Rpb1, domain 5; (InterPro:IPR007081); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain Eukaryotic RNA polymerase II heptapeptide repeat; (InterPro:IPR000684); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) 0.228711936034915 1.89952018357332 0.0843105658526284 1 0.950140978346285 12.3386996323712 0.228711936034915 0.146885528105535
AT1G20910_at 4.75127338441266 5.60370461849753 4.96568156708815 5.38599072490711 5.5223794543287 5.42321013750476 5.45889842953943 5.63822684140775 4.87300866504263 5.17232348952485 4.71001636621345 4.78179199849940 4.86272428912816 4.4038254652922 4.73335170268702 4.96199793881011 4.57051006556611 4.39037762841834 5.35276110483476 0.252120607621434 0.254858280356075 0.254911631583178 0.260484660238229 0.252120607621434 0.259114700664929 0.255932380204854 0.253910219505775 0.261732978199775 0.253291893475169 0.252120607621434 0.252120607621434 0.252120607621434 0.261996515657534 0.252120607621434 0.255391676304825 0.266919117790529 0.257332901620235 0.256367276574513 1 1 - 7277205 7278486 7277777.111 7276932 7281127 - gene protein_coding_gene FALSE TRUE AT1G20910.1 ARID/BRIGHT DNA-binding domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76510.2); similar to AT-rich interaction re (GB:ABE82605.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -0.247291834407194 -1.89815358794674 0.0845052042665805 1 0.948213182465944 10.2484317371912 -0.247291834407194 0.168254351892884
AT1G67540_at 1.50454567532765 1.24824222171042 1.82231830951578 1.67477986675522 1.51233428157116 1.52662362024540 1.15293922931608 1.49713032655161 1.68314717762878 1.50214629605026 1.82233184798979 1.47489275059256 2.08471717487786 1.76348248912691 1.62942880114086 1.45145217520505 1.61413977839463 2.07500190920060 1.81272793692913 0.227974327370226 0.232577163603194 0.226475112961086 0.235211338789683 0.233289855795346 0.227373914222905 0.229617156368695 0.224526621236364 0.227104475561152 0.228698483225195 0.224489609688341 0.224489609688341 0.240268633711728 0.229477687019571 0.234705005333657 0.229213949316532 0.224489609688341 0.239981248996541 0.228157935702624 1 1 - 25315160 25315722 25315450.545 25314905 25316145 - gene protein_coding_gene FALSE TRUE AT1G67540.1 unknown protein 0.178361692621046 1.89752775832725 0.0845944768847835 1 0.947330563378146 3.19508319271688 0.178361692621046 0.0785696283230082
AT1G26710_at 0.707445065168638 0.13726642438965 0.544431243183018 0.440171539973945 0.473838362870146 0.639857742970996 0.61959898070485 0.36816674912209 0.544686668851345 0.765077224957171 1.19131095725805 1.08766467256210 0.354864673934873 1.40017224604576 0.883725993722932 0.974932753317629 0.841962944784898 1.16857421826827 0.645219816717308 0.220207785463825 0.221197970837756 0.223115166791300 0.223409663736187 0.220932639719091 0.217383396678808 0.218465135814508 0.223716003359277 0.232461381128704 0.222279720917004 0.223444757833683 0.224492389978822 0.228055199139632 0.223103953913240 0.228377235753956 0.220243976253744 0.221323357617287 0.220333035394116 0.218067542708602 1 1 - 9232608 9233056 9232794.455 9232315 9233131 - gene protein_coding_gene FALSE TRUE AT1G26710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26720.1) 0.201347619024046 1.89711936296826 0.0846527801089306 1 0.94675466740049 1.31112816071229 0.201347619024046 0.113050450254546
AT2G29450_at 10.0943001198835 10.2254474786490 9.76480833166666 9.78740625135534 10.4658654519528 10.0292990686401 11.1598475666299 10.8612382716988 9.77168086629676 10.2147314835831 10.2794861608363 9.9771677157164 10.1237160971626 10.0394268888084 10.0199922272330 10.3330144596802 10.4192067309977 10.2484499647478 9.96279138534436 0.101071544092437 0.100369630809977 0.101721727627733 0.101521428692669 0.100005508185215 0.109833350758039 0.101329682113511 0.100335693584964 0.114255693228827 0.100501435013191 0.101351433054302 0.0999575015535082 0.103340509576314 0.102648994281107 0.105028664894988 0.0994187967055382 0.105432186715842 0.0994187967055382 0.103201009234864 2 2 - 12631908 12632540 12632313.909 12631663 12632712 - gene protein_coding_gene FALSE TRUE AT2G29450.1 ATGSTU5 (Arabidopsis thaliana Glutathione S-transferase (class tau) 5); glutathione transferase Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002) Identical to Glutathione S-transferase 103-1A (EC 2.5.1.18) (103-1A) [Arabidopsis Thaliana] (GB:P46421); similar to ATGSTU6 (GLUTATHIONE S-TRANSFERASE 24), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29440.1); similar to glutathione S-transferase GST 13 [Glycine max] (GB:AAG34803.1); similar to glutathione S-transferase [Euphorbia esula] (GB:AAF64450.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, omega-class; (InterPro:IPR005442) -0.188186982202597 -1.89701563834344 0.0846675939181375 1 0.946608409818994 20.3800892887541 -0.188186982202597 0.0943851009777898
AT3G25040_at 8.93984512636728 8.84985498004986 8.40831703029779 8.52442768328136 8.7965070691292 8.72951260146398 8.80207240908168 8.86043006941491 7.9130677675607 7.8052814690452 8.34011908810433 8.64719578852444 8.31079359753598 8.36251819173948 8.74614297736838 8.16081161128436 7.99462221094099 8.18772414601989 7.62355917062785 0.18654505156054 0.181118683934014 0.185847194805233 0.188439081099828 0.18038994957291 0.181902935041285 0.185489757813466 0.180302844514825 0.193443074223572 0.186613181167764 0.191075087496122 0.183462967485572 0.177976892890515 0.208840934266384 0.186754843654984 0.181258458760978 0.190407912385925 0.180949141448904 0.194917013599274 3 0|3 /|+ 9124927 9125902 9125388.8 9124311 9126305 + gene protein_coding_gene FALSE TRUE AT3G25040.1 ER lumen protein retaining receptor, putative / HDEL receptor, putative similar to ERD2 (ER lumen protein retaining receptor 2), receptor [Arabidopsis thaliana] (TAIR:AT1G29330.1); similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12) (GB:Q9ZTN2); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) 0.157372632754896 1.89583903161137 0.084835802820964 1 0.944949583345379 16.8010594147279 0.157372632754896 0.0297099052278115
AT3G12730_at 2.82729096661422 3.25014308820117 3.97162610624178 4.30418245384201 4.57543635550483 4.37751544180029 4.09525151578906 4.97631511220631 3.58208277929384 3.73937835054351 3.5974925288145 3.33510720174027 3.53933210482755 3.02633451150546 3.00010571104064 4.04639568000199 4.12368523971303 3.71976849866062 3.32721252766657 0.250116071573645 0.255527822104842 0.254167158941853 0.259454683099411 0.257260503864186 0.255483422124914 0.252145022365522 0.257318852990847 0.26464757718415 0.250998982676294 0.253448000394969 0.250116071573645 0.257156524934173 0.257606531212825 0.25476116683298 0.252761043975744 0.258367064642844 0.269024960762577 0.250368998349081 3 3 - 4047253 4048247 4047506.8 4047079 4048621 - gene protein_coding_gene FALSE TRUE AT3G12730.1 myb family transcription factor similar to APL (ALTERED PHLOEM DEVELOPMENT), transcription factor [Arabidopsis thaliana] (TAIR:AT1G79430.2); similar to myb family transcription factor-related protein [Populus tomentosa] (GB:AAV85474.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.259454858673953 1.89582949207202 0.0848371678623838 1 0.944936136047533 7.59626291521128 0.259454858673953 0.181900406199732
AT4G16143_at 8.07377048941252 8.05750194563221 7.90438522374675 7.92856477557703 8.26724544877115 7.74330627082368 8.39434088368499 8.35297972394934 6.82978360211832 6.93597918323512 7.24157246003275 7.23781242182154 7.88542978504257 7.55725043440567 7.64602704297481 7.46113852102563 7.0522273924238 7.20373995558811 6.5744367848551 0.165425175447518 0.168409275401500 0.175165267316826 0.165425175447518 0.168130351505301 0.179511066107741 0.166479264388730 0.165496013066528 0.177882329016731 0.181271137203621 0.178832673299500 0.165425175447518 0.16922471015914 0.169050787009581 0.169501872096582 0.177336125877524 0.191031904000460 0.174278338073903 0.173606697793070 4 4 - 9134783 9135998 9135502.818 9134003 9137215 - gene protein_coding_gene FALSE TRUE AT4G16143.1 importin alpha-2, putative (IMPA-2) similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); similar to importin [Oryza sativa] (GB:AAQ13406.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.185905198660702 1.89576657048234 0.0848461720097922 1 0.944847440153375 15.1856199827333 0.185905198660702 0.0910919253764308
AT2G15790_at 2.67863682234040 2.77266966673115 3.06872415115334 2.54008244379787 2.747698017993 2.79214266527915 2.82624274471381 2.75986633708356 2.67585162952906 3.05390370244684 2.48877248003161 1.74281454596156 2.59453758993686 2.34993971158133 1.73573667111701 1.87969990998779 2.56709532929651 2.14188767656925 2.04286608560321 0.183206143680894 0.183236024605129 0.184908951801349 0.188019719054555 0.185877536652041 0.185072637728699 0.188539193635284 0.186366740035281 0.186090277323180 0.183155106500288 0.183201923900447 0.193950029398712 0.189983478750832 0.183865063523394 0.191317666914557 0.182289816704270 0.191617760472718 0.186246652773128 0.183081639862002 2 2|0 -|/ 6885558 6886855 6886231.889 6884856 6887980 - gene protein_coding_gene FALSE TRUE AT2G15790.1 SQN (SQUINT) SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot. Identical to Peptidyl-prolyl cis-trans isomerase CYP40 (EC 5.2.1.8) (PPIase CYP40) (Rotamase CYP40) (Cyclophilin-40) (Cyclophilin of 40 kDa) (Protein SQUINT) (CYP40) [Arabidopsis Thaliana] (GB:Q9C566;GB:Q9XIL2); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G63400.2); similar to PREDICTED: similar to peptidylprolyl isomerase D [Macaca mulatta] (GB:XP_001097233.1); similar to Os06g0216800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057148.1); similar to peptidylprolyl isomerase D [Rattus norve (GB:NP_001004279.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.187752694855428 -1.89559054136128 0.0848713666505444 1 0.944599312110635 5.16247500372151 -0.187752694855428 0.093942606655044
AT1G32340_at 6.78727141682826 6.63058219618682 6.85837430400718 6.9995101729468 6.77857478956427 6.85303792427451 6.1218464242075 5.91680754370863 6.32899892203889 6.25236545894582 6.26276934556222 5.71528620451937 5.97971078365198 6.35538541498633 5.51043283738301 6.1677824786971 6.41982531224708 6.18186718280245 6.17599264246061 0.168347419662108 0.174149635834541 0.179090980973682 0.172932552610507 0.167111223500913 0.176571303809526 0.169707309335523 0.172528482701227 0.180084306795928 0.165824108806165 0.172071646197927 0.174386815898239 0.170537173675648 0.181859980050042 0.179744551299831 0.166497427672233 0.173291647563443 0.168540516384173 0.165824108806165 1 1 - 11663534 11664235 11663877.636 11663050 11666038 - gene protein_coding_gene FALSE TRUE AT1G32340.1 NHL8 (NDR1/HIN1-like 8); protein binding / zinc ion binding Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G14250.1); similar to OSJNBa0006A01.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE05472.3); similar to Predicted E3 ubiquitin ligase (ISS) [Ostreococcus tauri] (GB:CAL52288.1); similar to OSJNBa0006A01.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05471.3); contains InterPro domain RWD; (InterPro:IPR006575); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.164963753149069 1.89481415556128 0.0849825713238325 1 0.943505055793145 12.7815429895303 0.164963753149069 0.0525062070390041
AT3G21175_at 5.37904622348238 5.45154063170048 5.01948258910425 5.03309784486374 5.43475920470218 5.30428504335809 5.00968531168082 4.78107532361341 4.81111186433655 4.43132652372703 4.63307748566491 4.7854295870565 4.99666013923618 5.02690686247842 4.90743721959559 5.16769426613539 4.94791775596945 4.75493067068389 4.61577529087294 0.181634194976676 0.177094061077992 0.177594289843403 0.181558839950051 0.175403335258595 0.178767085702958 0.173729886046003 0.173373809462899 0.182935465919483 0.181802547843679 0.182010932830571 0.175227336146195 0.182145446093686 0.172711235786067 0.173384728744851 0.178124379577208 0.179874642736386 0.184037197140135 0.175527258815869 3 3|0 +|/ 7423253 7424379 7423640.5 7422042 7424911 + gene protein_coding_gene FALSE TRUE AT3G21175.1|AT3G21175.2 ZML1 (ZIM-LIKE 1); transcription factor member of a novel family of plant-specific GATA-type transcription factors. Identical to GATA transcription factor 27 (ZIM-like 1 protein) (ZML1) [Arabidopsis Thaliana] (GB:Q8GXL7;GB:Q8LF08;GB:Q94B66;GB:Q9LU42); similar to ZML2 (ZIM-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51600.2); similar to male-specific transcription factor M88B7.2 [Marchantia polymorpha] (GB:AAT12424.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain ZIM; (InterPro:IPR010399); contains InterPro domain CCT; (InterPro:IPR010402) 0.162835743297413 1.89436475599984 0.0850470019230717 1 0.942871755165416 9.9375771755622 0.162835743297413 0.0473065895169232
AT4G00480_at 0.788199867374958 1.18074433047823 1.31883589113182 1.24419970511808 0.995377616883834 1.09730749292373 1.36998501852861 1.04181113133653 1.29343631761494 1.30561225336131 1.59925457427753 1.85187422288199 1.47623252989033 1.5617040911397 1.79445857793991 1.38498503617836 1.91850244782008 1.55991172552387 1.42256584549243 0.198864359213053 0.195896038952609 0.200700491193182 0.198910733480524 0.192231289314497 0.195230603619892 0.197110293069299 0.199185280098802 0.198317475327392 0.205458677824394 0.20635358230066 0.196939642803385 0.196674176077967 0.203398705095393 0.198342374729425 0.193161825710448 0.191053121482185 0.19462651750038 0.193951355714408 4 4|0 -|/ 217147 217764 217380.667 216944 219743 - gene protein_coding_gene FALSE TRUE AT4G00480.1 ATMYC1 (Arabidopsis thaliana myc-related transcription factor 1); DNA binding / transcription factor MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus similar to TT8 (TRANSPARENT TESTA 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G09820.1); similar to bHLH33 [Malus x domestica] (GB:ABB84474.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.185786175734183 1.89381887039259 0.0851253263712886 1 0.942102577365615 2.62150940148665 0.185786175734183 0.0912031761979442
AT4G26600_at 2.13216000827155 2.34394849313852 2.56403384084793 2.39291150830489 1.80734029343189 1.98242007905634 2.57040830780168 2.46749861372723 1.53980696551356 2.05653450931776 1.50362024281033 1.57861219798406 1.42875582330829 1.99663543985452 1.58492012849534 1.73932512871858 1.74547115607642 1.66811256516848 1.80092334221988 0.216516793813080 0.201613001561125 0.205192896265146 0.201485796331528 0.209936203145823 0.205561426877471 0.206699626647574 0.205647065189613 0.199885728954137 0.209109962937332 0.205840311305732 0.203481074514927 0.203836511367708 0.214357268696019 0.205522102574607 0.203935135608563 0.202551099077918 0.199577133867647 0.206666132754699 4 0|4 /|+ 13422444 13423062 13422765.75 13419573 13423796 + gene protein_coding_gene FALSE TRUE AT4G26600.1 nucleolar protein, putative similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT5G55920.1); similar to Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p [Medicago truncatula] (GB:ABE89312.1); similar to Os09g0551300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063867.1); similar to putative proliferating cell nuclear protein P120 [Oryza sativa (japonica cultivar-group)] (GB:BAD12915.1); contains InterPro domain Nop2p; (InterPro:IPR011023); contains InterPro domain rRNA subunit methyltransferase; (InterPro:IPR006174); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) -0.167617056186441 -1.89348447027194 0.0851733394339382 1 0.94163144239297 4.0099750718987 -0.167617056186441 0.058782711241124
AT3G10590_at 2.16565309239654 2.12854717078559 2.3320477374867 2.22625610191489 1.58622710079205 1.76354617231555 1.83658354354429 1.89852907589865 2.43189206247304 2.39187449658975 2.08691023907592 1.70893355684065 2.2613144427503 1.79890750840861 1.83581378595065 1.49764208935056 2.08298722091555 2.25971977796609 1.86669022881521 0.191674360598086 0.190027051473309 0.193846906930244 0.187246741966725 0.191719827744281 0.187840973570525 0.197581252492801 0.191340824935277 0.192300177870027 0.191607563872724 0.198380224388697 0.196876420727331 0.191319357299348 0.189052068430977 0.186574033422330 0.194172726195169 0.195697596525681 0.193498340217325 0.193731890548845 3 3 - 3310450 3311249 3310975.818 3310429 3311316 - gene protein_coding_gene FALSE TRUE AT3G10590.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT4G09450.1); similar to MYB-like transcription factor DIVARICATA [Antirrhinum majus] (GB:AAL78741.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.159466313748841 -1.89346929726749 0.0851755185612985 1 0.941610066111643 4.07801416953343 -0.159466313748841 0.037854307098966
AT1G77640_at 2.20664773081785 2.16478563904672 2.13363523375942 2.43131747525155 1.89155376925735 2.16410556585436 2.3656853729646 2.4868258692662 2.63189751919431 2.20227743129290 2.35439607028418 2.26499566603289 2.17375314176806 1.83270905472717 2.44809572291157 2.27081698529163 2.19204532770603 2.3963771357784 2.48796571595041 0.157382060924603 0.16728831887381 0.161354436853604 0.162294267958839 0.156613953682689 0.158207691886157 0.155215480502246 0.165021784413533 0.159160267476188 0.160984519508717 0.155215480502246 0.161845516178890 0.162918859174001 0.178462599042866 0.158345826497172 0.163929160002568 0.157226646929109 0.156475443007537 0.165912806854907 1 1 + 29183939 29184389 29184166.636 29183631 29184569 + gene protein_coding_gene FALSE TRUE AT1G77640.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to AP2 domain-containing transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G21910.1); similar to AP2 domain-containing transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16924.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.174949029704945 -1.89310350227089 0.0852280691321563 1 0.941094744530058 4.5717506787981 -0.174949029704945 0.0732834201517064
AT3G46590_at 8.50762390688109 8.64887694198842 8.92568216326553 8.75438679580681 9.18704183661846 8.5424676308684 9.28629193129224 8.90969005555267 9.29330032631765 9.31367354062277 8.65547362081139 8.67244328430975 9.09415782379568 8.99934851754791 8.1151893144478 9.20947013103645 8.94267811406783 8.71439002871561 9.143998370338 0.119206312365750 0.116710994761345 0.117369544426486 0.11866195718361 0.116393245058929 0.120020134665192 0.126498951796467 0.117181833704367 0.123712973034828 0.116762015846003 0.119638692421643 0.117045983373162 0.118869226018204 0.122465301511153 0.114209823641023 0.113334323103687 0.124850207422971 0.121591299915391 0.114095579143826 3 3 + 17166133 17166904 17166613.636 17163760 17167212 + gene protein_coding_gene FALSE TRUE AT3G46590.1|AT3G46590.2|AT3G46590.3 TRFL1 (TRF-LIKE 1); DNA binding Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers. similar to ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G59430.4); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G59430.2); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G59430.2); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.217828163520029 -1.89278286870344 0.0852741563442653 1 0.940643082578838 17.8706166245014 -0.217828163520029 0.134782745009101
AT2G47640_at 7.95955045593133 8.60241313700433 7.96453243097643 7.9294889668552 8.36471338219288 7.21145798026749 7.6582503828718 7.30734410068004 7.71438804164239 7.22816689063734 6.93345629079353 7.12517526824164 7.04287352746581 7.09527603036627 6.99924604408679 7.25708980657276 6.13219818288981 6.41971769526038 7.51168013703492 0.207631071629218 0.206905252713660 0.205911347204361 0.204740327085637 0.213287520763147 0.214251968968254 0.211682717404471 0.225283973976235 0.204740327085637 0.20851261014481 0.206899114442526 0.212809267069989 0.208999406463318 0.211828112077030 0.210443513358849 0.204740327085637 0.238918932143912 0.212026386511924 0.204740327085637 2 0|2 /|+ 19544971 19545477 19545321.222 19544248 19545694 + gene protein_coding_gene FALSE TRUE AT2G47640.1|AT2G47640.2|AT2G47640.3|AT2G47640.4 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62840.1); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62840.2); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.311728623222063 -1.89267028287321 0.085290344651896 1 0.940484496342485 15.0549059190047 -0.311728623222063 0.236498919177662
AT1G33700_at 3.76167969216867 3.63069465041515 3.95056828346586 3.87375670738014 3.80488624243200 4.03192754760421 4.10404662977761 3.9443165052182 4.48486951683196 4.36499060824364 4.65160520686157 5.10556399839841 4.51756453224248 5.22748936793146 4.72859847043829 4.37956650798928 4.79820107334867 4.84117143465618 4.66470651118488 0.176785430021536 0.185707078902905 0.182317861216473 0.179976859834352 0.178091644227929 0.177577395471939 0.175832719466486 0.179560523221731 0.180494393880827 0.179391109405241 0.181051316862638 0.183366067525046 0.175832719466486 0.180821600674190 0.178392233192227 0.182092432572888 0.183620788141404 0.178884460100978 0.183538693058541 1 1|0 -|/ 12208838 12209397 12209083.6 12208288 12214162 - gene protein_coding_gene FALSE TRUE AT1G33700.1|AT1G33700.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49900.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10060.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24180.2); similar to unknown protein [Oryza sativa] (GB:AAL31035.1); similar to Os11g0242100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067588.1); similar to At5g49900 [Oryza sativa (japonica cultivar-group)] (GB:AAX95400.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Protein of unknown function DUF608; (InterPro:IPR006775) 0.165732427194390 1.89259454912679 0.0853012357265316 1 0.940377821673994 8.53077234200946 0.165732427194390 0.0547571226530144
AT2G41780_at 3.99294332233862 3.72122365551484 4.00164294518566 3.99250139809365 3.52625428604474 4.05060644638595 3.31301704576788 2.98585042261763 3.90103338177591 3.55979069297405 3.68615168726612 3.74385058930226 3.7177492434179 3.84697702740034 3.75159600599326 3.98111614744028 4.06070736754237 3.75670252019641 3.93985386644784 0.185435164394625 0.193441165087646 0.191017870095648 0.188790228726875 0.199777719927099 0.193062799053928 0.198431641185314 0.185437020719057 0.187812547938596 0.188937344639792 0.195598232352205 0.194247598895133 0.185435164394625 0.189489356763997 0.187325407932667 0.185435164394625 0.1958870177532 0.187754209719615 0.188063572454039 2 2 + 17435235 17435589 17435416.182 17435176 17435890 + gene protein_coding_gene FALSE TRUE AT2G41780.1|AT2G41780.2 unknown protein 0.203686500269178 1.89239451589036 0.0853300081574313 1 0.940096074526999 7.50717109222819 0.203686500269178 0.116846930950629
AT2G02540_at 1.72717649380239 1.99615292131227 1.55102341527392 1.94373840819433 1.21015989392010 1.61006223681688 1.53010049994828 1.83102597595959 1.71533959335721 1.73721486207311 1.38783807253073 1.28833566008428 1.64165485643616 1.30947908841483 1.91241909577568 1.53894044200178 1.53777716639796 1.61698304419530 1.79213262348368 0.216416879482346 0.211351073413648 0.214556587156731 0.209688754820105 0.212012194589000 0.215309957317229 0.216386952361450 0.219191342994926 0.214963515588981 0.212719302875258 0.209688754820105 0.212512788788663 0.215491355444621 0.210388968548993 0.209688754820105 0.209999098259684 0.219468928767555 0.209806868309562 0.215263367477406 2 2 + 684643 685208 684854.273 683646 685308 + gene protein_coding_gene FALSE TRUE AT2G02540.1 ATHB21/ZFHD4 (ZINC FINGER HOMEODOMAIN 4); DNA binding / transcription factor Zinc finger homeobox protein. Expressed in vascular tissue. similar to ATHB31, transcription factor [Arabidopsis thaliana] (TAIR:AT1G14440.2); similar to Os11g0243300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067594.1); similar to Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation re (GB:ABE90495.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.205709291139700 -1.89226380261494 0.0853488145608131 1 0.939911972032135 3.3136337079206 -0.205709291139700 0.119526967158081
AT2G39700_at 4.26603086463058 4.28813099832882 3.3237807523714 2.94299122043696 2.72001620750192 3.37384674750301 4.40232580542894 4.97307000084534 3.44189237888887 4.05137443462599 5.51114991431744 6.53177562497154 5.02676988950858 5.70175339006818 7.41962549609896 5.83777576342177 6.09930810186982 4.73380781422157 4.44679274569883 0.246034042137341 0.237698362912485 0.2390395198343 0.248998733713553 0.237805054713591 0.24632167659385 0.241046913963212 0.237780131875341 0.24818801423943 0.237257777112196 0.246122116257514 0.242808942977503 0.238431232656809 0.249537364048696 0.235859008571503 0.238968656194563 0.246406658273387 0.235588942796399 0.240567925712062 2 2|0 -|/ 16551362 16552205 16551949.2 16550910 16552662 - gene protein_coding_gene FALSE TRUE AT2G39700.1 ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) putative expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A4 precursor (AtEXPA4) (Alpha-expansin-4) (At-EXP4) (AtEx4) (Ath-ExpAlpha-1.6) (EXPA4) [Arabidopsis Thaliana] (GB:O48818;GB:P80837;GB:Q8LDZ1); similar to ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) [Arabidopsis thaliana] (TAIR:AT3G55500.1); similar to expansin [Populus tomentosa] (GB:AAV85475.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.242747605441704 1.89206222527202 0.0853778240405206 1 0.939628072799833 8.70515687582135 0.242747605441704 0.164058413001233
AT3G28630_at 1.61370733417215 1.29962435574698 1.69858530579628 1.40292264801834 1.36540076182131 1.76810071924281 1.56255694102142 1.01559010505988 1.48077607091625 1.45184729146549 1.60294547066755 1.39389884593424 1.70747241343685 1.39560871087787 1.97569624968269 1.68146567353492 1.77360374740782 2.22612039667895 1.45561057814234 0.226653420422665 0.224012936736873 0.224973604202126 0.231123700120447 0.224031481646985 0.223570770228221 0.234056982657148 0.233217650725661 0.231538280267518 0.224484891345402 0.221431340652076 0.224675009205828 0.225551341708466 0.225911887784616 0.222401810978475 0.221928116647350 0.224978390144928 0.242604496875722 0.227328808170162 3 3|0 +|/ 10730934 10731568 10731183.444 10730188 10732086 + gene protein_coding_gene FALSE TRUE AT3G28630.1|AT3G28630.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59710.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 0.221369733202916 1.89174148938805 0.0854240006547986 1 0.939176380614523 3.05698406404438 0.221369733202916 0.139242292470084
AT3G58020_at 1.86943805100708 2.09314912470753 1.66641176899717 2.31126082037602 1.88211928032840 1.69788196007363 1.74235162927583 2.38461037311711 2.64616782427943 2.58414247475631 2.19624810726951 2.29526734415172 2.50151300674199 2.30788512810148 2.23271343263799 2.30757846807699 1.90526393348128 2.23004990611214 2.57431935821972 0.194427264705541 0.192256504956369 0.198806089090544 0.205010703716857 0.199767791748391 0.192256504956369 0.20556546611756 0.195022820188673 0.199488631785556 0.200839583783339 0.203196184303919 0.192989074205158 0.200257985602886 0.195723604816785 0.197585657950311 0.193056869459112 0.196621909045936 0.203536287750917 0.197499849172076 3 3|0 +|/ 21492804 21494151 21493632.9 21489288 21494286 + gene protein_coding_gene FALSE TRUE AT3G58020.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42080.1); similar to Os07g0470800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059604.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE83776.1); similar to H0701F11.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86140.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.243723570173301 -1.89109788712377 0.0855167300857952 1 0.938270101795467 4.38020694343874 -0.243723570173301 0.165293624626721
AT4G00040_at 6.46804511113676 6.22515066805698 6.45482476363713 6.6368215918567 6.41005719388153 6.16049700128734 5.47687266174922 5.49993462360649 6.47390669141457 7.23757833292272 6.24741735332307 5.7299278130688 6.33902583963682 6.2238390603878 5.98330838320462 6.8482469685598 6.65272889569725 6.25316588845009 7.66872212431576 0.197702370222748 0.200638669382097 0.203497419658525 0.207840020362814 0.207361034667730 0.197524827248115 0.199579570016129 0.198362797207219 0.208413361712398 0.203727991214126 0.193995630062909 0.197785978484278 0.197455850484219 0.201868777913495 0.221024645450565 0.194291948065158 0.201049063048458 0.206393574163790 0.198705654129283 4 4 + 15310 15860 15524.364 14627 16079 + gene protein_coding_gene FALSE TRUE AT4G00040.1 chalcone and stilbene synthase family protein similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT1G02050.1); similar to anther-specific protein [Nicotiana sylvestris] (GB:CAA74847.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain Type III polyketide synthase; (InterPro:IPR011141); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.171989409699171 -1.89104789466064 0.0855239368220584 1 0.93819971158322 12.8722470726559 -0.171989409699171 0.0681168964483475
AT1G70850_at 0.981268741161107 1.38648420228333 1.11290520683573 1.39808357935066 1.57199603106165 1.17836119611480 2.00177405798947 1.47719224587198 2.11432400909703 2.29137755815807 2.14627328009615 1.80268315494567 1.91127358767617 1.70113980856110 2.21223339911747 1.56534081033368 1.96140578338074 2.05349326932136 2.25533318021775 0.282486535006813 0.298055601820795 0.308000054854908 0.291436294403261 0.287925229571606 0.283013304977133 0.285466392676768 0.282161225892593 0.297052153363565 0.290713423774182 0.290575392726415 0.305370616448742 0.305450687150837 0.310926067692683 0.289704805329622 0.286082479785373 0.300901518959186 0.302877458396963 0.286435488703906 1 1 - 26719037 26720373 26719806 26718528 26720445 - gene protein_coding_gene FALSE TRUE AT1G70850.1|AT1G70850.2|AT1G70850.3 Bet v I allergen family protein|MLP34 (MLP-LIKE PROTEIN 34) Identical to MLP-like protein 34 (MLP34) [Arabidopsis Thaliana] (GB:Q9SSK7); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70830.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)|Identical to MLP-like protein 34 (MLP34) [Arabidopsis Thaliana] (GB:Q9SSK7); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70830.2); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.223728918815500 -1.89054882884398 0.0855959110823515 1 0.937497065496185 3.45829580883525 -0.223728918815500 0.142248484652197
AT3G12040_at 3.85465239290715 3.82546938783999 3.56731862030321 3.88302528891221 3.49837675113716 3.48828336620669 2.38211898751226 2.38150387906669 3.26940789611089 2.64469323125152 2.07720605906437 1.94943032133694 2.11533388115778 2.57380440943942 1.75943747230836 2.31302832058434 2.54080860205008 1.95383740309252 3.05556837064595 0.2254223794289 0.224277282451064 0.232584953042815 0.227408556020814 0.223848249459823 0.237370254078482 0.235702547850534 0.221339023331673 0.221555264997355 0.221339023331673 0.225636479052092 0.221929213246755 0.225166971611241 0.221471598155927 0.229466312513893 0.221339023331673 0.230425340383261 0.229268848404051 0.223138091386927 3 3|0 -|/ 3835388 3836594 3836002.6 3835135 3836839 - gene protein_coding_gene FALSE TRUE AT3G12040.1 DNA-3-methyladenine glycosylase (MAG) Identical to DNA-3-methyladenine glycosylase (EC 3.2.2.21) (3-methyladenine DNA glycosidase) (MAG) [Arabidopsis Thaliana] (GB:Q39147); similar to putative DNA-3-methyladenine glycosylase [Oryza sativa (japonica cultivar-group)] (GB:BAD17141.1); similar to Os02g0774500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048275.1); contains InterPro domain Formyl transferase, C-terminal-like; (InterPro:IPR011034); contains InterPro domain Methylpurine-DNA glycosylase (MPG); (InterPro:IPR003180) -0.165607089615963 -1.89047665668833 0.0856063242247608 1 0.937395459725396 5.93521890488501 -0.165607089615963 0.0548953297672276
AT4G21410_at 2.04610388305279 2.08048346769973 3.10130253962256 2.52039582584511 3.13076354696196 2.14682431900537 2.47747209897663 2.37517327124897 2.71613100040642 2.82659019108095 2.90443875538434 2.89899819146809 3.1007960511609 2.63678433121054 2.91054222083893 3.0611708790775 2.71511606267596 2.79280598237088 2.88432127289286 0.217937469680247 0.214798323338207 0.219266766961799 0.216939848902652 0.217064597817745 0.217954419719131 0.209811360622001 0.209811360622001 0.218945473929453 0.215705462689241 0.214014177820117 0.227404630274663 0.219019857480271 0.215443794423845 0.215901415687862 0.212963208208581 0.213425511478701 0.216611471197932 0.217960380682435 4 4 - 11402479 11403147 11402730.818 11402325 11405067 - gene protein_coding_gene FALSE TRUE AT4G21410.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G21400.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00970.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.274290391047104 1.88973951576648 0.085712747282726 1 0.936357796243737 5.32811272608504 0.274290391047104 0.198616400556007
AT1G29040_at 6.92575310875996 7.0155027957813 6.63433678498536 6.41792679417955 7.23508851066893 6.50303618797243 6.34347611343222 6.24775477303943 6.08657309283599 5.64635514329614 6.18987210375733 6.63262825165415 5.67724370614418 6.7773194018042 6.19633040400511 6.10532108757915 5.64250737261793 5.89175943136667 5.57668803316959 0.23714849083565 0.246862373569252 0.249485470427283 0.239577076359825 0.240431645640488 0.244281717309565 0.245767247327986 0.241960273825699 0.250426005486688 0.242672881746715 0.236625252804125 0.237347780580065 0.236496546970604 0.242930146584886 0.244518214295362 0.239149600713501 0.244366860182621 0.237539482063213 0.239451545779865 1 1|0 +|/ 10134106 10135139 10134320.714 10134055 10136110 + gene protein_coding_gene FALSE TRUE AT1G29040.1|AT1G29040.2|AT1G29040.3 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1); contains InterPro domain Conserved hypothetical protein 2058; (InterPro:IPR011719)|similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1) 0.216863000898598 1.88962453325628 0.0857293586145313 1 0.936195953649589 12.6198567884191 0.216863000898598 0.134042144812981
AT1G24280_at 3.39372327950581 3.40392560645676 3.31196665429726 2.74045845812849 2.91501645377341 3.12896212840208 3.64142665879989 4.23121100896483 2.91706725458113 3.23742739922278 3.5433392019315 4.48346056519512 3.51614150670575 3.19389512450072 3.2820305208531 3.30046263968614 2.87395890655307 3.42264119831294 3.63611202915202 0.211102712627450 0.20825575512917 0.212761830860702 0.211151500341006 0.217714041961083 0.20825575512917 0.223458610340345 0.213576523461826 0.218161527090297 0.212470656008651 0.213690535804259 0.216790061039782 0.219625669631273 0.219716536624376 0.212741807329758 0.210360177659601 0.214634928176714 0.210809024461105 0.211594018756186 1 1 + 8611661 8612311 8612054.455 8609434 8612569 + gene protein_coding_gene FALSE TRUE AT1G24280.1 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3); glucose-6-phosphate 1-dehydrogenase Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. Identical to Glucose-6-phosphate 1-dehydrogenase 3, chloroplast precursor (EC 1.1.1.49) (G6PD3) (G6PDH3) [Arabidopsis Thaliana] (GB:Q8L743;GB:O48695); similar to G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G13110.1); similar to G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G35790.1); similar to Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (G6PD) (GB:Q43793); similar to plastidic glucose 6-phosphate dehydrogenase [Nicotiana tabacum] (GB:AAF87216.1); similar to glucose-6-phosphate 1-dehydrogenase [Solanum tuberosum] (GB:CAB52708.1); contains InterPro domain Glucose-6-phosphate dehydrogenase; (InterPro:IPR001282) -0.227507533899765 -1.88957848314178 0.0857360122300947 1 0.936131137495453 6.70359966551737 -0.227507533899765 0.146876830017708
AT4G16280_at 4.92123923383873 4.72623769105449 5.24918281344045 4.93847298789903 5.44909731925276 5.21684531744437 4.49218201350715 4.67608204639703 4.90171099156663 4.56737565781833 4.56554606623517 4.80148701555669 4.82103139740345 4.5512116527553 4.60263057019193 4.93698117523415 4.66177666193762 4.67281626372484 5.0880888397498 0.238760404577988 0.231153280996188 0.239591340799101 0.240156650959141 0.236492624018419 0.241833880982062 0.239093024981415 0.234487631057384 0.248801171595592 0.238839651762523 0.235104380515502 0.231153280996188 0.248161757768953 0.233893222867228 0.244626651468211 0.231966205111288 0.239214178955835 0.241001380749631 0.235800233577644 4 4|0 -|/ 9207381 9208618 9208239.5 9206613 9214841 - gene protein_coding_gene FALSE TRUE AT4G16280.1|AT4G16280.2|AT4G16280.3 FCA (FCA); RNA binding Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.179378816989055 1.88937981822679 0.085764722066439 1 0.935851522280949 9.73570589289999 0.179378816989055 0.0815978728515517
AT3G10760_at 6.56692386448165 6.69872753247798 7.15259160345973 6.77150206918003 7.03740717156051 7.12615546202227 7.70693966042774 7.64349762851127 6.68149657832415 6.51623282914873 7.42344954349395 7.46912503872709 7.29975289688595 7.3331077675246 6.90245954759613 7.44616192547474 6.99750228022207 7.17310923392813 7.12842315004282 0.164167595297159 0.155882248022032 0.158942100243429 0.156627068426557 0.156194622479768 0.166016428273666 0.161401050886385 0.152316048871968 0.173442501231455 0.163624571193368 0.161603176775027 0.153673907015541 0.158016372444734 0.165510418146208 0.164279188351381 0.156706423086747 0.161861411357574 0.157968300647466 0.159394338792690 3 3 + 3370347 3370794 3370526.909 3369585 3371232 + gene protein_coding_gene FALSE TRUE AT3G10760.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G05090.1); similar to induced protein MgI1 [Oryza sativa (japonica cultivar-group)] (GB:AAS90600.1); similar to Os05g0412000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055539.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.174045624236996 1.88921112184506 0.0857891079909772 1 0.935614097530943 14.1034519815502 0.174045624236996 0.072291002473768
AT3G28390_at 0.899334213770835 1.02545413511202 1.24131334244135 1.52098941920667 1.23155201557731 0.92246571011741 1.06794287449017 1.18182108732085 1.01599792821487 0.677960007081742 1.06616245971721 0.936374818940192 1.06146964027236 1.18358668597847 1.16501327444467 0.911012033876986 1.37684940916179 1.04446597821256 1.07865712786120 0.219070938689465 0.213775300310726 0.216784743001520 0.223381558450174 0.214951957952716 0.21626956830448 0.215372498372428 0.212839127593103 0.222742860003644 0.212839127593103 0.212839127593103 0.212920108458879 0.217518482568801 0.215215725021999 0.217598291655552 0.220627699223972 0.213648974825986 0.222020524187994 0.213072429664469 3 3 - 10630671 10631231 10630912.364 10630662 10635204 - gene protein_coding_gene FALSE TRUE AT3G28390.1 PGP18 (P-GLYCOPROTEIN 18); ATPase, coupled to transmembrane movement of substances Identical to Putative multidrug resistance protein 20 (P-glycoprotein 18) (MDR20) [Arabidopsis Thaliana] (GB:Q9LSJ5); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G28345.1); similar to P-glycoprotein, putative [Arabidopsis thaliana] (TAIR:AT3G28415.1); similar to PGP17 (P-GLYCOPROTEIN 17), ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G28380.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE79909.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABD33400.1); similar to P-glycoprotein homologue [Hordeum vulgare subsp. vulgare] (GB:CAA71179.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.177176905342569 1.88905066185521 0.0858123092334475 1 0.935388273791914 2.14502000406865 0.177176905342569 0.0778991174804346
AT2G20610_at 10.9230888730893 10.9533060066274 10.8431339949125 10.8122683401783 10.7873015949048 10.5669775259743 11.0384161089002 10.8861151934114 9.67471829309829 10.6751857988037 10.7588952050326 10.799240266474 10.6646813653385 10.8737142914673 10.4382541584933 10.7265851967473 10.4713534621147 10.8664680086965 10.1830429327301 0.085197303761306 0.0831351302846033 0.084780795658228 0.0894857822849112 0.082893390041241 0.086615957476066 0.0820762384189625 0.0820762384189625 0.097984305375393 0.0847300727434993 0.0825097690833483 0.0820762384189625 0.0820762384189625 0.0829876707981387 0.0849835576195348 0.0820762384189625 0.0841306139968851 0.0824627660045986 0.084063442397375 2 2|0 -|/ 8885301 8886182 8885906 8885041 8887466 - gene protein_coding_gene FALSE TRUE AT2G20610.1|AT2G20610.2 SUR1 (SUPERROOT 1); transaminase Confers auxin overproduction. Mutants have an overproliferation of lateral roots. similar to transaminase [Arabidopsis thaliana] (TAIR:AT4G28420.2); similar to putative nicotianamine aminotransferase A [Oryza sativa (japonica cultivar-group)] (GB:BAD23582.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.162219402285127 1.88877509755728 0.0858521671412097 1 0.93500047831195 21.2900999560029 0.162219402285127 0.0469498380953808
AT1G61130_at 1.58325282917894 1.48629789168475 1.71580204189131 2.1047687623158 1.42436967815670 1.60233820259408 1.53499352286159 1.56154830601249 1.56388133759935 1.41931380329135 1.98414764385701 1.63067165579585 1.52057871568915 1.74065418037818 2.01063364792554 1.94198353039365 2.09521403278104 1.89996600282196 2.03014870144308 0.223752450384345 0.214446288947729 0.219016463662714 0.216632273188851 0.212302307185637 0.212078118256596 0.214687766393220 0.217951166280425 0.216134701230003 0.215282918941319 0.216335610420465 0.211491540016555 0.217753701960886 0.211872300949319 0.220080283270425 0.211491540016555 0.223774178964622 0.216917652522406 0.216372679521684 1 1|0 -|/ 22532736 22533757 22533314.556 22532689 22535449 - gene protein_coding_gene FALSE TRUE AT1G61130.1 serine carboxypeptidase S10 family protein similar to SCPL31 (serine carboxypeptidase-like 31), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G11080.1); similar to Os05g0158500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054710.1); similar to Os02g0634700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047514.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE89060.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.176081547949535 1.88869751219528 0.0858633922469741 1 0.934891298858021 3.38871929949523 0.176081547949535 0.0760404086578647
AT1G65080_at 2.06499809153199 2.22592144071636 1.59249148043404 2.08049452024729 1.72864793733524 1.84390256235136 2.33036800341825 2.47799999566275 1.47334832798383 1.93330662416872 1.51086874087242 1.98553745719470 1.96288335481998 1.59740370876382 1.87265780072973 2.13046674486796 1.98431210329361 2.04015805226456 1.98470642744472 0.234927101296949 0.235699789108975 0.234343792528118 0.231396964432661 0.228411902130364 0.233362145594772 0.228411902130364 0.234201077953756 0.231293595899076 0.228938118108836 0.228775275161732 0.232368355930125 0.230501853679935 0.233494559490875 0.238467829756363 0.233334966784752 0.240014760154505 0.239026747601158 0.228411902130364 1 1|0 +|/ 24183060 24184348 24183669.571 24180245 24184534 + gene protein_coding_gene FALSE TRUE AT1G65080.1 OXA1 family protein Identical to Inner membrane ALBINO3-like protein 2, chloroplast precursor (Ath5) (ALB3L2) [Arabidopsis Thaliana] (GB:Q8L718;GB:Q9SS52); similar to binding [Arabidopsis thaliana] (TAIR:AT3G44370.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28559.1); similar to Os06g0171600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056935.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.187511111127631 -1.88845608141070 0.0858983312804451 1 0.934551566505931 3.88443123157046 -0.187511111127631 0.0946471577476184
AT1G77790_at 0.906547082668383 1.01362799276187 0.793779144483187 0.623014342159786 0.64213993150918 0.891252735068818 0.279984350258044 1.04267725214687 1.18272086530005 1.04429023743245 0.807162033876583 0.613012315934128 0.728054094558208 0.804400237007004 0.47685064359729 0.759936171250407 0.578508917478354 0.830359396098453 0.998121288538018 0.215773842964623 0.222154701340419 0.215773842964623 0.217675843912529 0.222530302792006 0.217724552076328 0.226478831777876 0.217301602477247 0.220893353152420 0.227650423293846 0.215773842964623 0.219113487794911 0.215773842964623 0.221774585454389 0.224838612971525 0.215773842964623 0.219657500491386 0.220841013371278 0.218028289163484 1 1 - 29255600 29256151 29255895.455 29255586 29256870 - gene protein_coding_gene FALSE TRUE AT1G77790.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G77780.1); similar to endo-1,3-beta-glucanase [Gossypium hirsutum] (GB:BAA21110.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.224210642675999 -1.88815612615603 0.0859417580264724 1 0.93412950853958 1.66154265720630 -0.224210642675999 0.143163866546286
AT1G54610_at 8.21815567491625 8.3926741417626 8.40526147393296 8.64826601950502 8.82608374636612 8.78342353945495 8.47133770822157 8.40294939636079 8.56841399303702 8.40810351396288 8.50280726354864 8.36706456462737 8.56790458559136 8.5151152041546 8.2429994574051 8.46899355655534 8.5009786066462 8.7675981000706 8.39307301526255 0.0950588492062675 0.0923843228069059 0.097623808109084 0.0975530081372674 0.0928832857824118 0.106837717955826 0.0985278100742284 0.0994367311141808 0.0981431496487612 0.098748026844716 0.0977695065510206 0.0947886348838367 0.096569048010380 0.095007734266418 0.0958312942275513 0.0923843228069059 0.0947126725939482 0.0930636763750736 0.0992210706713844 1 1 - 20397692 20399106 20398383.727 20397429 20400860 - gene protein_coding_gene FALSE TRUE AT1G54610.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G05050.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83648.1); similar to CRK1 protein [Beta vulgaris subsp. vulgaris] (GB:CAB89490.1); similar to putative CRK1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD89473.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.164815978868440 1.88771180715709 0.0860061225669571 1 0.933504377404902 16.9926253832712 0.164815978868440 0.0536203554529419
AT4G02680_at 8.21929978251095 8.43637114635824 7.91557225240172 8.09917149688717 8.75629231794326 8.56720191979229 7.96940967640633 8.18746573431347 8.07224597915832 8.38133697767076 8.5590153268502 8.68183903378667 8.55819355638277 8.3501309967145 8.20621806653047 8.6030303043774 8.49503357670166 8.50774264837442 8.38995660481717 0.157059364915609 0.156611094247971 0.162370983542278 0.161600832275944 0.160811505432444 0.169972482037651 0.157294938988319 0.157348500476267 0.163776766946885 0.160446003616143 0.168502023130436 0.160580571248253 0.160185044936077 0.161847388028712 0.166286159729025 0.155781779745467 0.170589652784887 0.166235289618281 0.159869201918368 4 4|0 -|/ 1181223 1182056 1181530.889 1181049 1184930 - gene protein_coding_gene FALSE TRUE AT4G02680.1 EOL1 (ETO1-LIKE 1); binding Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5. Identical to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1) (EOL1) [Arabidopsis Thaliana] (GB:Q9ZQX6); similar to ETO1 (ETHYLENE OVERPRODUCER 1) [Arabidopsis thaliana] (TAIR:AT3G51770.2); similar to EOL2 (ETO1-LIKE 2), binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G58550.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE80301.1); similar to ethylene-overproducer1-like protein [Lycopersicon esculentum] (GB:ABB46489.1); similar to ethylene overproducer-like 1 [Lycopersicon esculentum] (GB:AAZ08351.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.172696748345772 1.88730626799392 0.0860649081908678 1 0.932933866366714 16.6570131871251 0.172696748345772 0.0701100557897637
AT2G20860_at 9.8285140252978 9.9131107075705 9.7053967342886 9.77593977505107 9.78356553705927 9.65111489345691 9.93000375138629 10.2262735171741 10.2799124157226 10.3225602155934 10.3066339477137 10.2542839988379 10.0786867023875 10.1760918752338 10.3102209083069 10.4604767682402 9.95426130298993 10.1588534331273 10.3023069530517 0.0766313926742429 0.0766313926742429 0.085531293478466 0.0780045366446131 0.0766313926742429 0.0807881433006553 0.0799127885570504 0.0783358212901717 0.0818342519179305 0.0772838961867407 0.0787483737215495 0.077019140622908 0.0775274014935746 0.0855415441587605 0.0806192206255756 0.0766313926742429 0.0788759537369054 0.0793391317271777 0.0767133407976824 2 2 + 8987484 8987977 8987716.364 8986660 8988307 + gene protein_coding_gene FALSE TRUE AT2G20860.1 LIP1 (Lipoic acid synthase 1); lipoic acid synthase LIP1,Lipoic acid synthase, similar to lipoic acid synthase family protein [Arabidopsis thaliana] (TAIR:AT5G08415.1); similar to putative lipoic acid synthase [Pisum sativum] (GB:ABA29156.1); similar to putative lipoic acid synthase [Pisum sativum] (GB:ABA29155.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Lipoate synthase; (InterPro:IPR003698); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.167312921538881 -1.88730482705355 0.0860651171308444 1 0.932931839357594 20.1087557736075 -0.167312921538881 0.0593079986693223
AT2G45980_at 9.84660430196206 9.85369489155303 9.80638292758163 9.94410773060095 10.2967104259244 10.2268442375157 9.65745945695755 9.72986077852355 9.4940768462985 9.47251729875621 9.54946361604896 9.3028716028033 9.48641258259593 9.56701324055197 9.47616954709665 9.79537394246837 9.57720951997547 9.46358266063682 9.56540049923839 0.0978535388152182 0.0946606848647594 0.100778067409016 0.097650488578433 0.102328251084992 0.104632954024108 0.0976125138369515 0.0946606848647594 0.106341158344517 0.102495361342240 0.101071832114289 0.0946606848647594 0.100704316711736 0.099099345862932 0.0985736895102953 0.0946606848647594 0.101982925013908 0.100999143446867 0.101904029856395 2 2 - 18924775 18925446 18925088.545 18924425 18926182 - gene protein_coding_gene FALSE TRUE AT2G45980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00355.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80179.1) 0.156601840373883 1.88705421707061 0.0861014633193634 1 0.932579310472878 19.4391715790540 0.156601840373883 0.0295420244876913
AT1G76990_at 10.3597143037970 10.3893735728537 10.1446681181626 10.0452030578551 10.8971257914363 10.4150755179204 10.3392232702513 10.2933315156983 10.6524147475063 10.9135847548877 10.4622433019126 10.4406314495168 10.4137241823470 10.4301152340415 10.1567586696877 11.0478393374332 10.1345501958137 10.3580417568476 10.9054847722289 0.0760435264555182 0.0726960213120804 0.0770727116432204 0.0800253420222639 0.0751048463004055 0.0813088222679418 0.0733512142660783 0.076041631656755 0.0854942346984186 0.077889598833686 0.07615013189898 0.0736079085296578 0.0735555672435773 0.0726960213120804 0.0792973404295172 0.0730093195452464 0.0756607997045166 0.0762275513164198 0.0772843763133861 1 1 + 28939433 28940017 28939675 28937056 28940444 + gene protein_coding_gene FALSE TRUE AT1G76990.1|AT1G76990.2|AT1G76990.3|AT1G76990.4 ACR3 (ACT Domain Repeat 3) similar to ACR4 (ACT REPEAT 4), amino acid binding [Arabidopsis thaliana] (TAIR:AT1G69040.2); similar to Os02g0555600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047123.1); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os03g0413100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050359.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.181616309948697 -1.88671535056674 0.08615063192206 1 0.932102666900887 20.9876224472423 -0.181616309948697 0.085701640467231
AT1G27940_at 1.53714441384230 1.45397514538915 1.44033988702610 1.26884658316612 1.41767318135559 1.23435063504063 1.85260161861274 1.91008278904373 1.82704282239347 1.71150184312057 1.99387922551392 1.80715196375947 1.82025829412887 1.49098694627363 2.28318715034129 1.76464154920935 1.4283863250461 1.99916998744640 1.85932057062306 0.192723859073433 0.185110397949207 0.193040985878396 0.183271482339953 0.183588911392159 0.188250650910984 0.182915913176692 0.189926323146614 0.190356384230711 0.189338712175446 0.183621953844608 0.183376157759075 0.199651791019025 0.186845782311895 0.195481328267452 0.184185411565033 0.194595288825620 0.186979136892665 0.186360688677462 1 1 - 9733621 9734124 9733843.091 9733584 9738116 - gene protein_coding_gene FALSE TRUE AT1G27940.1 PGP13 (P-GLYCOPROTEIN 13); ATPase, coupled to transmembrane movement of substances Identical to Putative multidrug resistance protein 15 (P-glycoprotein 13) (MDR15) [Arabidopsis Thaliana] (GB:Q9C7F8); similar to PGP2 (P-GLYCOPROTEIN 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G25960.1); similar to ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19), ATPase, coupled to transmembrane movement of substances / auxin efflux transporter [Arabidopsis thaliana] (TAIR:AT3G28860.1); similar to PGP14 (P-GLYCOPROTEIN 14), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G28010.1); similar to H0423H10.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09461.2); similar to P-glycoprotein [Gossypium hirsutum] (GB:AAF23176.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59582.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.161989575952845 -1.88661408762784 0.0861653299174602 1 0.931960239912412 3.32574982781483 -0.161989575952845 0.0468330561340312
AT2G19390_at 3.17362214436181 3.74582685994412 3.36535935556783 3.97169372129994 3.51667059833852 3.32515974961915 3.62846756995555 3.43020538013551 3.14183286260734 2.99179693307937 3.49594568938237 3.78012338210953 3.66822761393512 3.31945895501072 3.74707690491546 3.66878102573633 3.29125599649187 3.44587514087259 3.28432855482319 0.198051498193309 0.195362448159234 0.200178810784566 0.199378894392535 0.200915294824956 0.201325269179584 0.193466217562397 0.198647370039958 0.203853946679556 0.194218013748717 0.194494906074297 0.193466217562397 0.198584078892838 0.201313579044320 0.193466217562397 0.193466217562397 0.198685108959147 0.200785233550514 0.194658368581584 2 2 - 8397325 8397792 8397584.545 8396882 8404944 - gene protein_coding_gene FALSE TRUE AT2G19390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29790.1); similar to Os01g0967100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045507.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44129.1); similar to Os05g0350700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055276.1) 0.231482002996944 1.88661136256567 0.0861657254835416 1 0.93195640714324 6.86533194176616 0.231482002996944 0.151957752300634
AT3G31430_at 1.67379648042051 1.18403276536445 1.89223705063148 1.84294849894618 1.07084127601516 1.6428420541679 1.32304529614061 1.54904655234306 2.12994006585123 2.02250580857514 1.39073009070436 1.461120996589 1.50284066051500 1.29784847460219 1.59701087213645 1.62743316801267 1.99086434222423 2.04470152292458 2.5391749401361 0.190423307968566 0.197205365875328 0.192716199641879 0.189724811624278 0.19565713603426 0.203487521284960 0.198601916043878 0.194354974935700 0.192424949237375 0.20174564425312 0.199808567846742 0.191433573910222 0.197115155014063 0.192982823049416 0.19228209185458 0.189724811624278 0.196907284757747 0.205840649031218 0.198775889274545 3 3 - 12798341 12798892 12798631 12798340 12799350 - gene protein_coding_gene FALSE TRUE AT3G31430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36228.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) -0.218367279592120 -1.88655318879662 0.0861741703028136 1 0.931874587002458 3.44465326549586 -0.218367279592120 0.136324827819626
AT2G02880_at 3.82764034808469 3.67495032729901 3.148435564861 3.27106071469276 3.25986547293542 4.05204383117428 3.71771621945769 3.83419347233802 3.15139407813357 3.37536394828956 3.02642286261509 3.16102231262914 3.27905109952262 2.78687726543857 3.39680033394107 3.20983874004923 3.78117625779798 2.69920700970450 3.32505377205831 0.202039571809075 0.199117284031258 0.200556568051161 0.203405496091020 0.195727791421025 0.206433024695270 0.197827750569664 0.197514447817334 0.206386093560478 0.198377374232142 0.195727791421025 0.197987113266549 0.195727791421025 0.201783889112641 0.198698163496895 0.196642460759411 0.205869170253948 0.195727791421025 0.204738573337708 2 2|0 +|/ 841687 843124 842727.5 841247 843428 + gene protein_coding_gene FALSE TRUE AT2G02880.1 mucin-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62270.1); similar to Os01g0801700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044542.1); similar to Os03g0379400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050235.1) -0.223580738413596 -1.88647819786996 0.0861850575168746 1 0.931769115610513 6.82398161954174 -0.223580738413596 0.142648348608056
AT2G18700_at 11.2721619642864 11.5372718267348 11.2686372715720 11.2638483264268 11.6054976588886 11.4410577333502 11.067860297568 11.1602278458198 11.8390229496467 11.5798572643013 11.4783642210264 11.1140616837315 11.2835045424036 11.2743927995357 11.0536245654272 11.5199930536085 11.1059804447421 11.4322191915465 11.8307017030304 0.0680397946916065 0.0681094396608614 0.0690513761725957 0.0716930371338780 0.0684185942647431 0.0750877992692926 0.0692606503398184 0.0718559409931374 0.0758254440094809 0.0701211173856834 0.0667716331109747 0.0667716331109747 0.0715109946062534 0.0692481586572012 0.0729427061647464 0.0667716331109747 0.0777371514983943 0.0706913126979075 0.0699647159321216 2 2 + 8118207 8118832 8118611 8116125 8119092 + gene protein_coding_gene FALSE TRUE AT2G18700.1 ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Glycosyl transferase, family 20; Trehalose-phosphatase [Medicago truncatula] (GB:ABE86430.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) -0.165856656141469 -1.88623041538965 0.0862210396934397 1 0.931420634348126 22.8433844664536 -0.165856656141469 0.0563101969980381
AT2G25200_at 8.73404375002 9.15263607689584 8.23730829780982 8.94806439013627 9.13211325108798 9.46028238543326 7.98162012559964 8.87279502666708 8.86463018868233 8.72413917603192 8.17371460989908 7.72899823532428 8.3550562173424 8.3678214790939 7.24219498634088 7.94922256731442 8.05298660472769 8.15255360466563 8.94951946368619 0.200993792078286 0.214692721199922 0.213255310604024 0.205916991782539 0.205430607978750 0.214189906591230 0.206287334733435 0.204663011219121 0.208465388064401 0.196493907059053 0.20337753015023 0.201535640360957 0.199206262344672 0.209374834135251 0.213696615090147 0.197636692667088 0.20842503797935 0.201211104020798 0.202535155746744 2 2 - 10743674 10744231 10743877 10743562 10744733 - gene protein_coding_gene FALSE TRUE AT2G25200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11000.1); similar to Os08g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061898.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28921.1); contains InterPro domain Protein of unknown function DUF868, plant; (InterPro:IPR008586) -0.292054700861878 -1.88576978021543 0.0862879684401852 1 0.930772853148424 17.2393153200672 -0.292054700861878 0.217683331529927
AT4G36510_at 2.40797670446924 2.41743062439960 2.59192473229552 2.56650488273892 2.14694306477106 2.30018589211973 2.19888313141307 2.20878234258389 2.22958324076973 2.78258540542410 1.97113118827161 2.07348674598985 1.85778999545895 2.05051545376256 1.96604968367396 2.46134330161472 2.14526299657394 2.11087731560577 2.44115732972819 0.211921580507174 0.208844876342292 0.213037594677177 0.208452567280798 0.206030771867433 0.207759982817993 0.207922026161265 0.204512279541066 0.20779348200346 0.208558064344006 0.21031464589331 0.200940003565213 0.205232713229119 0.203051198888647 0.218758062978782 0.203291104470210 0.210063300628919 0.200940003565213 0.200940003565213 4 4|0 +|/ 17228805 17229357 17229052.556 17228780 17229454 + gene protein_coding_gene FALSE TRUE AT4G36510.1 unknown protein -0.155881732295114 -1.88566266024887 0.0863035394704273 1 0.930622223130227 4.63682846039534 -0.155881732295114 0.0269859335703731
AT4G20110_at 8.84735096487881 9.18679926098618 9.6079262027294 9.85306722789566 8.99992240031482 8.59714128714524 6.4165980718058 6.34384579971925 7.13514457563253 6.5484047554206 4.6493974668916 3.65380031393425 5.93534737013425 5.99128346060897 3.62946175328027 6.27968635616777 7.4977356421048 6.59632139204062 6.45095854635473 0.205809243899211 0.205809243899211 0.205809243899211 0.212915528773532 0.205809243899211 0.210721906633502 0.215861923588549 0.215273571911297 0.213716464497134 0.207731253508446 0.217389784914613 0.210841903597916 0.220954618095048 0.220099615128684 0.222571383740251 0.208903262421567 0.224351720895082 0.209360350019037 0.208753827989853 4 4|0 +|/ 10877541 10878529 10878065.556 10875299 10878740 + gene protein_coding_gene FALSE TRUE AT4G20110.1 vacuolar sorting receptor, putative Identical to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f) (VSR7) [Arabidopsis Thaliana] (GB:Q8L7E3;GB:O49438); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT1G30900.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G34940.1); similar to VSR-2 (Vacuolar sorting receptor 2), calcium ion binding / peptidase [Arabidopsis thaliana] (TAIR:AT2G14720.2); similar to Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa proaleurein-binding protein) (GB:P93484); similar to Putative vacuolar sorting receptor protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05373.1); similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (GB:Q9FYH7); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.191746174383231 1.88562624321733 0.0863088336641758 1 0.930571015105974 14.6018973245334 0.191746174383231 0.101328609414171
AT1G01610_at 7.55388461771074 7.89519856276174 6.93174053913834 7.61561255251225 8.95069940835119 8.96175388327807 8.54208825660348 9.01686656061553 8.90230687704749 8.1607854567744 9.56307922997511 9.54964903209707 9.37944464826526 9.41292000961286 9.0964431691467 9.18228621147081 7.46175788445275 8.4537429862367 8.155325831718 0.194100515028895 0.182011202561476 0.213520683533686 0.204325845589705 0.178180976903835 0.189778178429731 0.187308797852867 0.179082483481328 0.185988071100311 0.183736118519896 0.181464708020753 0.178180976903835 0.183600801780177 0.189330358115247 0.185935861968473 0.178180976903835 0.216654818740499 0.181986472128332 0.178180976903835 1 1 - 222122 222729 222350.545 221691 224340 - gene protein_coding_gene FALSE TRUE AT1G01610.1 ATGPAT4/GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15) (AtGPAT4) (GPAT4) [Arabidopsis Thaliana] (GB:Q9LMM0;GB:Q8W4N0); similar to ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT2G38110.1); similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G00400.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE91390.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) 0.234609052145478 1.88562254215809 0.0863093717293014 1 0.930565810865166 16.8927579400816 0.234609052145478 0.155721581142709
AT3G02320_at 4.98840984013687 5.43181442752172 4.90461278103908 5.03326250055895 5.38342030960746 4.78326686606332 5.28801915270465 5.50888888404666 3.64046931681845 4.07212303066988 3.88327655928927 4.17751637717079 3.91874736303614 3.72158257366819 3.67376971930526 3.64313065852024 3.77160593380072 3.58901818839068 4.15518383428778 0.251219551241449 0.250787988168670 0.255569779492027 0.252662351111931 0.254991379654374 0.256410157258993 0.252943745835547 0.245237595038225 0.249459531487808 0.251868986043813 0.249249762594335 0.249379961060954 0.245002108869755 0.252961218827279 0.247615265079408 0.250177537823396 0.255712425566512 0.253651414981413 0.248318973689545 3 0|3 /|+ 472756 473299 473022.444 469941 473695 + gene protein_coding_gene FALSE TRUE AT3G02320.1 RNA binding / tRNA (guanine-N2-)-methyltransferase Identical to Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC 2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) [Arabidopsis Thaliana] (GB:Q9SRU7); similar to N2,N2-dimethylguanosine tRNA methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G15810.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96899.1); similar to Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase (tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA 2,2-dimethylguanosine-26 methyltransferase) (tRNA(m(2,2)G26)dimethyltransferase) (GB:Q9LFU5); similar to hypothetical protein [Cleome spinosa] (GB:ABD96937.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain N2,N2-dimethylguanosine tRNA methyltransferase; (InterPro:IPR002905) -0.218368467031492 -1.88535030489947 0.0863489584344042 1 0.930183017631045 9.04184000299635 -0.218368467031492 0.136496801353087
AT3G23130_at 1.75379564986925 1.42664252126231 1.93415837746202 1.89406901268295 1.87069036258245 1.64005565865715 1.70291076930557 1.59595139458833 1.84856427982907 1.88146789619457 1.97972911881337 2.17289500948330 2.11494680174853 2.0833097215061 1.85720662661474 2.24826807700947 1.95828472106154 2.19291672793974 2.10126221550085 0.261115575478121 0.266789968937994 0.263933023051296 0.264737482379638 0.269306035210243 0.260306680390455 0.256366632888671 0.264102720452216 0.256901893105345 0.26189556267284 0.257119084584841 0.259488312001356 0.263275292779541 0.254849937268699 0.263320817028328 0.256193916038777 0.254849937268699 0.254849937268699 0.273577957819509 3 3 + 8242534 8243098 8242789 8242309 8243379 + gene protein_coding_gene FALSE TRUE AT3G23130.1 SUP (SUPERMAN); DNA binding / nucleic acid binding / transcription factor/ zinc ion binding Flower-specific gene controlling the boundary of the stamen and carpel whorls. Similar to zinc finger transcription factors. Identical to Transcriptional regulator SUPERMAN (SUP) [Arabidopsis Thaliana] (GB:Q38895;GB:Q4PSN1); similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT2G42410.1); similar to hypothetical protein [Petunia x hybrida] (GB:BAD11142.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.173549036218522 1.88532981341206 0.0863519388299853 1 0.930154205550347 3.73713891714972 0.173549036218522 0.0720350304328565
AT2G23940_at 7.80899318743048 7.88306733014647 7.5988168599293 7.70588465222425 7.98470828344330 7.60703884881792 7.95317925102932 7.72284796243018 6.67324961914513 6.73257111724336 7.47893786327003 7.41604509454631 6.81910609399358 7.06120782522146 7.18315150604728 7.11992780022769 6.89670802429237 7.17980764182614 6.60627283136496 0.167971115075018 0.16984817757976 0.177548870183814 0.170520740883945 0.167248474866231 0.171076640758686 0.171118486393460 0.1752829820584 0.198619655244983 0.20062768311464 0.173697729561908 0.168535492939951 0.168207098574106 0.191132941193251 0.181093618000543 0.172992531792417 0.178007741859513 0.192064682294846 0.178048970956018 2 0|2 /|+ 10191486 10191958 10191682.333 10191046 10192411 + gene protein_coding_gene FALSE TRUE AT2G23940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30500.1); similar to Protein of unknown function DUF788 [Medicago truncatula] (GB:ABE94694.1); contains InterPro domain Protein of unknown function DUF788; (InterPro:IPR008506) 0.177876926802436 1.88474594167976 0.0864369002028426 1 0.929333312708615 14.6905967154794 0.177876926802436 0.079800006264461
ATCG00490_at 10.3827163421125 11.1279400277679 11.1097807368698 11.0746219526649 10.5888049850433 10.3843443472234 10.8215153457436 10.8028537187890 11.5465169381762 11.5925271417267 12.0561337121124 12.5805108852654 11.9498987157634 11.9230622076649 11.8256082960106 12.1512276820717 11.8972868247394 11.4594323190899 11.5220809588072 0.0797712913865188 0.0786641210084244 0.0766800728306154 0.0797155955025507 0.0790792031408954 0.0830603571080796 0.0779308119041805 0.0774468851459269 0.084793960691149 0.0766800728306154 0.0766800728306154 0.0766800728306154 0.0769827113999689 0.0819005776577069 0.0775517347064393 0.0776753921455878 0.0823802078350085 0.076818178307959 0.076997744289035 C C + 56053 56351 56200.545 54958 56397 + gene protein_coding_gene FALSE TRUE ATCG00490.1 large subunit of RUBISCO. Identical to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685) 0.216159190475059 1.88444083771453 0.0864813276555173 1 0.92890439932083 22.553623895315 0.216159190475059 0.133907512788971
AT2G29970_at 9.67900368602338 10.1391979143224 9.6227289415354 9.61770076507809 10.1556906802278 9.71526093708233 10.2968552520913 10.2082707236950 9.79936490141973 10.2044948005980 10.2874272041819 10.3268311521716 10.1274529377308 10.0203771904795 9.03464338384564 10.1966332599898 9.89670890566217 9.80197128935505 10.1638627818229 0.129287812821612 0.128573118846743 0.134668507030993 0.136907767731380 0.126883619659377 0.137534550004602 0.127284920255075 0.131348841929485 0.137562550049270 0.137138056215119 0.126883619659377 0.127198978636722 0.131331922905466 0.133379787754685 0.143250528726297 0.126883619659377 0.139638559825003 0.139048801350700 0.133865072381834 2 2 + 12786369 12786828 12786619.545 12783463 12787015 + gene protein_coding_gene FALSE TRUE AT2G29970.1 heat shock protein-related similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91056.1); similar to Os12g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065925.1) -0.198694196119317 -1.88424256308536 0.0865102105210976 1 0.928625683182186 19.9380451925273 -0.198694196119317 0.111298447524702
AT2G02560_at 6.66008634059368 7.27987934242136 7.36120898814579 7.15679248493975 7.34716442178502 5.94753163288737 7.06161474550173 6.89504630747838 5.39470321043563 6.34753582236722 6.64384361699649 7.24678625041215 6.36828971104473 6.64637463428359 6.74491695169693 6.88745679815097 6.30819093438507 6.39158131658127 6.10123431613471 0.262392326099677 0.251951589599438 0.249560455298491 0.253826234108273 0.250966466494169 0.268678399578213 0.250413359699867 0.248424717912248 0.269401504718687 0.250032080305839 0.249131315539516 0.243651988881847 0.24744166657815 0.260345207583032 0.259567091880126 0.24894097707263 0.274004604454443 0.261258369416125 0.256308180885488 2 2|0 +|/ 689871 697200 696142 689787 697595 + gene protein_coding_gene FALSE TRUE AT2G02560.1|AT2G02560.2 CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED, HEMIVENATA); binding Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. similar to KIAA0829 protein [Homo sapiens] (GB:BAA74852.2); similar to PREDICTED: similar to TIP120 protein [Macaca mulatta] (GB:XP_001106780.1); similar to PREDICTED: similar to Cullin-associated NEDD8-dissociated protein 1 (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) isoform 1 [Apis mellifera] (GB:XP_393409.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.342936637494375 1.88417575662043 0.0865199442874364 1 0.928531775881848 13.264917771139 0.342936637494375 0.268800548987931
AT2G43030_at 11.8508796378942 11.9910142663169 11.3770930638021 11.4509186660824 11.7002704363388 11.8455833928790 11.9858859684073 12.1419415295467 12.4446430191084 12.2698979587117 12.5209573453467 12.6417328097759 12.2207573208465 12.3320162768743 12.7712605775522 12.3570387316683 11.9387352280519 12.3126708902214 12.2177209729761 0.0626267740052725 0.061892033412393 0.062420950033876 0.0626364375985286 0.0625589966123445 0.0654629900752964 0.0628263074182306 0.0624815950699408 0.0678333265783393 0.0645738033063497 0.0615722432856892 0.0614324388960479 0.0617736728360429 0.0656023244794323 0.0627080804863036 0.0614324388960479 0.0642782996333738 0.0652425233648801 0.0626189445863612 2 2 + 17902203 17902738 17902460.182 17901913 17902943 + gene protein_coding_gene FALSE TRUE AT2G43030.1 ribosomal protein L3 family protein Identical to 50S ribosomal protein L3-1, chloroplast precursor (RPL3A) [Arabidopsis Thaliana] (GB:Q9SKX4;GB:Q8LEQ9); similar to RPL3P (ribosomal protein large subunit 3P), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G17465.1); similar to 50S ribosomal protein L3, chloroplast precursor (GB:O80360); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) -0.161410898411150 -1.88364917564701 0.086596702962721 1 0.927791634924588 24.1417734357289 -0.161410898411150 0.0459678035554632
AT2G30820_at 2.00440818197374 1.80190887777896 1.81230567534807 2.19489107219692 1.69420609572442 1.72922121335877 3.03986005562495 2.80924675211207 1.80427058738541 2.19204710336582 2.44852308639651 2.26869397832089 2.03746625782855 2.34175513380032 2.13490133404782 2.29874430864785 2.54813147434265 2.22928206543043 2.28567722033577 0.215985399313744 0.209763094815408 0.211552333557431 0.218276386577127 0.217818161899169 0.213002265946950 0.221124506414426 0.214746788227912 0.209875625743708 0.214859504057725 0.209763094815408 0.211365347277546 0.217219045512017 0.213148905381042 0.216501585157327 0.210582266769086 0.209763094815408 0.217976003806019 0.213654137286616 2 2 + 13138639 13139440 13138972.818 13136654 13140022 + gene protein_coding_gene FALSE TRUE AT2G30820.1|AT2G30820.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06660.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19018.1) -0.180880525779585 -1.88295196639003 0.0866984302875963 1 0.92681181283155 4.32697374478851 -0.180880525779585 0.0850940081472785
AT1G73690_at 1.47283461452326 1.40180243591392 1.64120303210915 1.64344213047137 1.35645319812232 1.44601817291176 1.36631797721319 1.25153304936986 1.70251240767450 1.89130926980341 1.54988142100677 1.25844187298894 0.903366936680564 0.917656055959372 1.60708023177096 1.45097415437996 1.35085955192954 1.61901435435409 1.78389983895772 0.200449750921158 0.193772899726085 0.202707538546525 0.192255989363524 0.200025129980162 0.197228497807536 0.207818763086021 0.195820129046028 0.191398419788668 0.202388942311871 0.195806935529931 0.193767102553830 0.196418661962265 0.195530571496287 0.200877114789359 0.194520750976989 0.195049802419171 0.204218956482009 0.194599465763859 1 1|0 +|/ 27719969 27720655 27720227.3 27718609 27720942 + gene protein_coding_gene FALSE TRUE AT1G73690.1 AT;CDKD;1/CAK3AT/CDKD1;1 (CYCLIN-DEPENDENT KINASE D1;1); kinase cyclin dependent kinase activator CDKD;1. Nuclear localization. Involved in cell cycle regulation and cell differentiation. similar to AT,CDCKD,3/CAK2AT/CDKD1,3 (CYCLIN-DEPENDENT KINASE D1,3), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G18040.1); similar to CDK-activating kinase [Medicago sativa subsp. x varia] (GB:AAK97227.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.155878701139753 -1.88269969400999 0.0867352655612315 1 0.926457323498853 3.00981715692718 -0.155878701139753 0.0280370177444834
AT1G19030_at 0.875577161245508 0.98828941707579 0.864166746447595 1.15633960459294 0.959353228611439 1.13205557093331 1.43957421693236 1.50074747508700 1.84385454939561 1.47386776454036 1.46880635495368 1.40037345732107 1.46863385698992 1.64123156741036 1.34709700373200 1.15330587912991 1.34929008633978 1.79120070929829 1.531862173737 0.216560385619221 0.204911697633555 0.217747453885186 0.215042741892858 0.215639331448678 0.209634865146146 0.211638893100284 0.207249364314798 0.211630360016193 0.224462683068760 0.205742838208061 0.206708778108614 0.216515405154793 0.203422595908957 0.211281794693518 0.207285401375952 0.211018792118350 0.210701480416768 0.219859762182688 1 1 + 6572359 6572902 6572676.636 6571175 6572928 + gene protein_coding_gene FALSE TRUE AT1G19030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13655.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.168552039049810 -1.88266890864629 0.0867397616387689 1 0.926414065875182 2.64902319109301 -0.168552039049810 0.0627874417137296
AT1G13080_at 8.83762609154393 9.11594990425241 9.21504679161598 9.3046393267739 9.52058606732706 9.1585362742051 10.3829980060414 10.5182981393578 10.1112288028743 10.2974263690269 10.2456808697355 10.3370646636198 10.2330600203204 10.2342087247264 9.80162767519261 10.6027662273324 9.9418737481447 10.3650063785903 10.0904029394422 0.133221324931764 0.128857357920499 0.131637525688525 0.131302092286166 0.12918362157011 0.135683645783779 0.123449793749378 0.131284163132535 0.124060549768968 0.128336870553153 0.127645079704397 0.127409238162237 0.128874190223718 0.129922504777096 0.124103927135452 0.123449793749378 0.131810508908125 0.128276325032261 0.126046401374358 1 1 + 4460295 4460780 4460555.182 4459164 4460938 + gene protein_coding_gene FALSE TRUE AT1G13080.1|AT1G13080.2 CYP71B2 (CYTOCHROME P450 71B2); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B2 (EC 1.14.-.-) (CYP71B2) [Arabidopsis Thaliana] (GB:O65788;GB:Q41953;GB:Q8VZK5;GB:Q9SAE2); similar to CYP71B20 (cytochrome P450, family 71, subfamily B, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26180.1); similar to CYP71B19 (cytochrome P450, family 71, subfamily B, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26170.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|similar to CYP71B20 (cytochrome P450, family 71, subfamily B, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26180.1); similar to CYP71B19 (cytochrome P450, family 71, subfamily B, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26170.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.180103792820861 -1.88264115302858 0.0867438154181738 1 0.926375065737177 19.6999669462591 -0.180103792820861 0.0838694294178179
AT2G04800_at 1.89495218393574 2.42976718725413 2.36081011899403 2.78418858504984 2.00783328729652 1.86222526317041 1.92893116470608 2.49543408208580 2.77099401869291 2.64961490449852 1.84287635260416 2.02063940422517 2.13416436726709 2.16993350759660 1.95304974934921 2.06374377127870 1.84099490889979 2.87197124603019 2.51923931121631 0.144736762246924 0.145802629094810 0.142067946165771 0.142259982915184 0.139770823316216 0.139981474312721 0.147049749939197 0.150361699920419 0.147785225999728 0.146124956598490 0.143435386774551 0.14083863336022 0.158453000465627 0.144934348612449 0.150145425847559 0.1441982366792 0.152193174498020 0.142867654839295 0.140218212374935 2 2 - 1687369 1687570 1687469.545 1687193 1687814 - gene protein_coding_gene FALSE TRUE AT2G04800.1|AT2G04800.2 unknown protein -0.23397562779864 -1.88207750310525 0.0868261756955206 1 0.925583124164114 4.59991160483271 -0.23397562779864 0.155499381629887
AT3G56990_at 3.1629801806388 3.06091238111500 3.02779776736244 2.49073964799185 2.30058777523037 2.96848989979826 3.17660177944055 2.65673597466738 2.36737634832888 2.84249913191647 2.31194299393932 2.32912822646133 2.35662034217596 2.05678616710002 2.64930280011578 2.44432231650924 2.80279918432339 2.29946890353070 2.56078329090261 0.198680732143364 0.200027344978308 0.199507697104053 0.198839710769184 0.201450093273723 0.203595208105010 0.209568823260192 0.200625803095772 0.206805158195647 0.203031157948939 0.199866464379785 0.200627955851598 0.197620495232684 0.200852629561205 0.197203028938034 0.203886253619087 0.199875076305485 0.197203028938034 0.209179212707553 3 3 - 21099341 21099977 21099737.909 21099236 21103040 - gene protein_coding_gene FALSE TRUE AT3G56990.1 EDA7 (embryo sac development arrest 7) similar to putative glycine-rich protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44785.1); similar to WD40-like [Medicago truncatula] (GB:ABE84245.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain NUC153; (InterPro:IPR012580) -0.250663514991443 -1.88183969647591 0.0868609454893425 1 0.925249033097156 5.35386365435664 -0.250663514991443 0.174365173453314
AT1G49520_at 2.68384485439713 3.16022308480400 2.88959648040745 2.70541656409788 2.85783898370588 2.81821710353231 3.22697020288522 3.00667838555511 2.62439651159753 2.78419768801833 2.48746717756776 3.02666795579198 2.50442697763357 2.40129142721135 2.31033565493251 2.45805980280047 2.04962710450010 2.85288678116488 2.64886773828755 0.209743763525291 0.216268565867394 0.207428762944425 0.218293968272685 0.210203450343322 0.214626114253182 0.20215740588902 0.213694016808842 0.203403659150612 0.204941259235379 0.217423774048554 0.20214932433304 0.20686937143068 0.211612818313705 0.207325225926591 0.203158363013603 0.228633672814502 0.203256474517711 0.214047232131509 1 1|0 +|/ 18334550 18335025 18334853.333 18333364 18335537 + gene protein_coding_gene FALSE TRUE AT1G49520.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19080.1); similar to SWIB complex BAF60b domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99032.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.188068567370977 -1.88167785098047 0.0868846163097227 1 0.925021669894423 5.51718121050718 -0.188068567370977 0.0965013444248338
AT2G14290_at 1.54709457505266 1.45825724513795 2.08086476602045 1.82867856678364 1.41125311614989 1.91588266983644 1.30368293687139 1.41011294096130 1.47454951206489 1.47600294706638 1.50855812661062 1.51505500193538 1.54192875272053 1.75697053876367 1.01394473023090 1.59088104021568 1.46262252281656 1.67322494562437 1.56678571130232 0.239463561075980 0.239007538704509 0.250036777396928 0.242421309518264 0.246287818008468 0.242662027090842 0.246731741196358 0.240633820137487 0.242536468439738 0.239954858610045 0.243030808856565 0.239007538704509 0.239007538704509 0.245273585165129 0.24270286815163 0.241834180390635 0.246837239912739 0.251332433993567 0.247794516869237 2 2 - 6064526 6065039 6064800.727 6064370 6065606 - gene protein_coding_gene FALSE TRUE AT2G14290.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G25290.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) 0.190750836205982 1.88123005899509 0.0869501393780795 1 0.924392651558106 3.12631715085634 0.190750836205982 0.100530950467224
AT4G04970_at 6.20420676758017 7.22071794863193 5.91803031470423 6.04596112540861 7.47978216319567 6.54942333949851 6.52295559812747 6.71884459713419 6.50294562249665 5.94675905454815 5.8211210905758 6.55034080500232 5.55201631191847 5.76599848595026 5.12913480495732 6.02573044834149 5.05040236379788 5.57406830845761 5.98703137546394 0.290683374348538 0.284891999329737 0.296177740363495 0.289958010447936 0.290080067588703 0.293054243683738 0.290130751225316 0.286911587839940 0.291856390007643 0.293018516873351 0.282556344373646 0.282556344373646 0.289384208405196 0.289568988404201 0.285680559767561 0.282556344373646 0.292168343052389 0.282556344373646 0.282556344373646 4 4 + 2541886 2542394 2542124 2537037 2543129 + gene protein_coding_gene FALSE TRUE AT4G04970.1 ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a gene similar to callose synthase similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL05 (GLUCAN SYNTHASE-LIKE 5), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G03550.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD87286.1); similar to 1,3-beta-glucan synthase component-like [Oryza sativa (japonica cultivar-group)] (GB:BAB84371.1); similar to putative beta-1,3-glucan synthase [Nicotiana alata] (GB:AAK49452.2); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.31517954948056 -1.88108968230055 0.0869706893334817 1 0.924195477141877 12.4970803625575 -0.31517954948056 0.241880733751905
AT4G15940_at 8.65001268818735 8.3333866244759 8.7607819385918 8.81546574477431 8.80734114616529 8.53913437389731 9.08191740400392 8.86626563647143 7.83330567621936 8.38675787935373 8.5045203301827 8.3693252014129 8.43899975396112 8.49341472498286 8.50711665069223 8.22298363815425 8.53808338938233 8.27074819028082 7.95693585215303 0.128078764982537 0.118760830072093 0.124802399277258 0.120564029269186 0.119988312740834 0.126217146486212 0.126937051566099 0.129411606831687 0.157472627803379 0.118786782656799 0.123570351278941 0.121251741020926 0.122056438512659 0.121117446844341 0.116215891964499 0.123887346548822 0.121338788960836 0.136373059999580 0.120072685960784 4 4|0 +|/ 9038658 9040152 9039548.889 9038304 9040758 + gene protein_coding_gene FALSE TRUE AT4G15940.1 fumarylacetoacetate hydrolase family protein similar to fumarylacetoacetate hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G16700.1); similar to isomerase-like protein [Arachis hypogaea] (GB:AAZ20293.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (InterPro:IPR002529) 0.178467197439151 1.88051693018899 0.0870545817275592 1 0.923391054820806 16.9703625882992 0.178467197439151 0.0814797043798626
AT4G38220_at 9.21752967190549 9.51258455126488 9.3765104623445 9.50865493349949 9.53351700686643 9.29184407985441 9.95472714138314 10.0581915688525 9.63549888633592 9.90799405039817 9.53423837881036 9.56920315408749 9.52065892188414 9.65202874387045 9.85515788941706 9.7043842345236 9.60751382135987 9.98731640822052 9.75722832255903 0.100843223115317 0.100444010829023 0.109919220685007 0.103393114239081 0.100444010829023 0.107488110191023 0.104310775395359 0.107157181057408 0.104901165407720 0.103624950871424 0.104087622765335 0.106088521792594 0.101350544918301 0.108497963957080 0.101412027703789 0.103421548631367 0.110121774143164 0.104372808747685 0.103209961814072 4 4 + 17926264 17926710 17926526.889 17925174 17927091 + gene protein_coding_gene FALSE TRUE AT4G38220.1|AT4G38220.2 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative similar to aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT1G44820.1); similar to ArgE/dapE/ACY1/CPG2/yscS [Medicago truncatula] (GB:ABE89211.1); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain ArgE/dapE/ACY1/CPG2/yscS; (InterPro:IPR001261); contains InterPro domain Peptidase dimerisation; (InterPro:IPR011650); contains InterPro domain N-acyl-L-amino-acid amidohydrolase; (InterPro:IPR010159) -0.173110502559828 -1.88012471390259 0.0871120735708958 1 0.922840258028815 19.2795548172227 -0.173110502559828 0.0721100810802649
AT4G16730_at 1.01749808459787 0.946507766518126 1.38596006921834 1.45744512099782 0.887045811295906 1.43828630812956 0.968284901792394 1.03996607380603 1.12650955314603 1.48152916471402 1.30483521831875 1.37822568837169 1.33632154745607 1.42086211975340 1.16396175384329 1.13605867545711 1.20692755521377 1.66072095354766 1.13503298236843 0.187895707388236 0.181983524653719 0.184393605529354 0.188356408241169 0.185029355279087 0.186557241974468 0.185314158987534 0.186654844676449 0.193754715873325 0.194024686051322 0.182290360459048 0.181374715700889 0.188441819743953 0.183331249970587 0.189168294445073 0.189733666168507 0.183025116642177 0.196340082342006 0.185676096596116 4 0|4 /|+ 9405088 9405958 9405652.222 9402920 9406025 + gene protein_coding_gene FALSE TRUE AT4G16730.1 lyase/ magnesium ion binding similar to ATTPS03 (Arabidopsis thaliana terpene synthase 03) [Arabidopsis thaliana] (TAIR:AT4G16740.1); similar to terpenoid synthase [Vitis vinifera] (GB:AAS79352.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) 0.188709371492098 1.87961822400091 0.0871863675801052 1 0.922129063436994 2.42946414491353 0.188709371492098 0.0977650131944506
AT3G52830_at 1.09936909782618 1.28867802643025 1.52985458740520 1.47523697985781 1.01403053332069 1.11197679102268 0.833242886530744 0.964701348547915 1.50201452923117 1.39269923683666 0.87619004103312 1.12559299575244 1.01108991714393 0.986901301926077 0.721366759374718 0.9386804905592 0.663315524454613 0.964811794793403 1.50989425538701 0.196010040499546 0.197729405251535 0.195488157281214 0.195816836020394 0.193249733149780 0.199894213490831 0.196847795945594 0.192920464713335 0.195202756178913 0.197333644118327 0.195841717112614 0.198244504619994 0.196776728551118 0.202939708992528 0.193947789031093 0.195519462402192 0.202121757361613 0.205859743864834 0.195593582846084 3 3 + 19589072 19589156 19589099.455 19588983 19589243 + gene protein_coding_gene FALSE TRUE AT3G52830.1 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54700.1); contains domain Insect cysteine-rich antifreeze protein (SSF51156) -0.160466093810387 -1.87948536996566 0.0872058648069957 1 0.92194252937354 2.35423441984167 -0.160466093810387 0.0443559562005144
AT1G09330_at 8.48662670127096 8.76526054883941 8.68769299914531 8.77639925241678 8.95432018474609 8.5137009144393 8.82417090315506 8.36207437015131 7.79114352689118 7.66081140857236 7.89859528022964 8.15225586699448 7.8403976882392 7.53161716399857 8.1165518200119 7.64762022695664 7.9553488563827 8.03137371481476 7.37365433834722 0.183532580633483 0.184011017084747 0.188141009729392 0.17693308408984 0.179701223010849 0.181099777065420 0.186463791667879 0.175542801952367 0.187434901647151 0.176701957837281 0.189849051618957 0.185802188527381 0.177554413462968 0.188352737700759 0.190119788267283 0.178931497662255 0.186941394336563 0.182336814993816 0.182854794055893 1 0|1 /|- 3013013 3014347 3013572.875 3012764 3015093 - gene protein_coding_gene FALSE TRUE AT1G09330.1 Identical to FAM18-like protein At1g09330 [Arabidopsis Thaliana] (GB:Q8LEK2;GB:Q9ZPZ2); similar to Os01g0331900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042930.1); similar to Os05g0159100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054714.1); similar to FAM18-like protein CG5021 (GB:Q8IQC1); contains InterPro domain Protein of unknown function DUF846, eukaryotic; (InterPro:IPR008564) 0.205839429716292 1.87939131973857 0.0872196697392125 1 0.921810481598321 16.4239089851741 0.205839429716292 0.121531223771536
AT2G22770_at 2.32272824426172 2.39515027587361 2.33552422724435 2.55327099671728 2.04895113905411 2.14022643552122 2.08983112150387 2.49919976301018 2.74908344821461 2.85573721778774 2.30286415889724 2.50314364994372 2.25064506148098 2.01129913113331 2.03678376333345 2.61989057437234 2.40084041408674 2.65611812173492 2.3406587915788 0.183112189976237 0.181539046652718 0.183242355799119 0.178378284010774 0.180619942797394 0.185462912831037 0.182386677441371 0.185267199674290 0.189097969391132 0.183436257625304 0.185424974295165 0.181920994103244 0.180889361111485 0.184174755385327 0.183664662413758 0.182079535998006 0.182454067479438 0.183153608789899 0.182795965950376 2 2|0 +|/ 9692354 9693191 9692914.6 9691805 9693675 + gene protein_coding_gene FALSE TRUE AT2G22770.1 NAI1; DNA binding / transcription factor regulates the development of ER bodies similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G22760.1); similar to symbiotic ammonium transporter; nodulin [Glycine max] (GB:AAC32828.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.179014597341159 -1.87839222127256 0.0873664441954548 1 0.920407923338465 4.79620590634824 -0.179014597341159 0.082736142670518
AT1G23130_at 12.8307807582137 12.874493148468 13.2544308084304 13.2912609519247 13.3107957396545 13.1210725480981 13.3525958185014 13.3561953147878 12.9618422006996 13.0105954836270 13.1211482148947 12.8222530615495 13.3319448293558 13.0312561117125 12.5763109673302 13.1075283227239 13.4292030895149 13.0352125532703 12.6783595144867 0.082136306599348 0.0755451620596526 0.0783182487814862 0.076794247757518 0.0755629885477432 0.0789360320922591 0.0792355576585118 0.0774903413378849 0.0832968381815843 0.0777181731450227 0.0805555856124235 0.0831409554746759 0.0755451620596526 0.0807484736841733 0.0838262779301684 0.0816636461379159 0.0767562810402506 0.0772595259763648 0.0762702832039616 1 1|0 +|/ 8200439 8200961 8200736.8 8200372 8201224 + gene protein_coding_gene FALSE TRUE AT1G23130.1 Bet v I allergen family protein similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70840.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.157065914778544 1.87750070876924 0.0874976054221494 1 0.919156689250645 26.1441812410424 0.157065914778544 0.0342958710719924
AT1G05570_at 10.0062106406268 10.2387417481562 10.0999052743620 10.1714686497269 9.93115562242197 9.02342729682593 6.49129217351676 6.64824671782919 7.24594011434196 6.51644973632409 5.1373518189135 5.66641437913394 6.0014008647745 6.41269979439046 5.17143116562765 6.13414665066133 6.3429708065274 6.43111399936413 6.90585929060236 0.266175375750008 0.267631556063362 0.267246201075985 0.264746598758612 0.267264847099037 0.273541019504208 0.258669548674271 0.258048474944555 0.277624682323281 0.260109997658808 0.261285989070264 0.257872387675245 0.257251246926502 0.260016188761629 0.269440756341354 0.256917029078245 0.278787904169446 0.271996573446549 0.257863110313589 1 1 - 1647922 1648709 1648262.545 1647719 1658685 - gene protein_coding_gene FALSE TRUE AT1G05570.1 CALS1 (CALLOSE SYNTHASE 1); transferase, transferring glycosyl groups Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48. similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to ATGSL12 (GLUCAN SYNTHASE-LIKE 12), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G13000.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93351.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) 0.241570597651641 1.87720608240682 0.0875409913059629 1 0.91874324306376 15.4771097981067 0.241570597651641 0.164883726072312
AT3G04220_at 2.40985073267468 2.75398066704952 3.00809132042827 3.00309393069302 2.38349877541751 2.21865142153989 2.02688475010131 2.40951980187732 3.11755721216783 2.59454932841889 3.08337336101376 3.04719232400486 2.72978051587722 2.97780487581044 3.571828693306 2.74133294030663 2.61887283321324 3.30140689341113 2.96076972157913 0.258034331287127 0.261938609321776 0.272456244773850 0.259850821607405 0.258034331287127 0.271760563789803 0.258906715680799 0.268001037750213 0.272607964097076 0.264996258551040 0.269045482935950 0.266705159126182 0.260956083264418 0.260341544420421 0.269121677363535 0.258034331287127 0.263972964107645 0.258265104457328 0.263192453704574 3 3 - 1109159 1109699 1109466.727 1109125 1112195 - gene protein_coding_gene FALSE TRUE AT3G04220.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G44510.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G14080.1); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.185632587328296 1.87697928101715 0.0875744029514537 1 0.918424995521769 5.47665032930929 0.185632587328296 0.0935191339810682
AT3G24570_at 7.00641605844211 7.48939595867413 6.47937976322095 7.08091810858382 6.87752524061326 6.78339384954661 7.42837678922888 7.25707935643119 7.59730301292124 7.22254307483852 7.38635589532735 7.6514640753687 6.76601155005116 7.49474974389958 7.70057940439625 7.39582314165631 6.71087294474105 7.60035856705784 7.0352781083773 0.166097795016444 0.165606350542512 0.185013862450539 0.167836814275095 0.162567254621647 0.168614929511580 0.165412621507722 0.165861558059412 0.169505797268737 0.160325200410495 0.168504032951741 0.172620930811442 0.170359041726985 0.162705028552221 0.168830676390453 0.16246022221537 0.176202374867375 0.170085826397673 0.160765251421524 3 3|0 -|/ 8966760 8968401 8967033.7 8966528 8968664 - gene protein_coding_gene FALSE TRUE AT3G24570.1 peroxisomal membrane 22 kDa family protein similar to peroxisomal membrane 22 kDa family protein [Arabidopsis thaliana] (TAIR:AT5G43140.1); similar to Os01g0228300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042476.1); similar to hypothetical protein DDBDRAFT_0205515 [Dictyostelium discoideum AX4] (GB:XP_642423.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) -0.218388641801494 -1.87692201438123 0.0875828411419378 1 0.918344641847906 14.3619697976049 -0.218388641801494 0.137719495107360
AT2G21120_at 8.08828405266918 8.415253077287 8.61419881809098 8.65714183689095 8.84020186755748 8.54588009736588 8.21258648671921 8.49301695358636 7.90230352693264 7.82273033433168 8.20927720993287 7.94586110419958 8.30480023729504 8.08783136443613 7.24696422693184 7.94051334581873 7.8773893659204 7.76515128997707 8.02599469286147 0.177150727887247 0.161140441831692 0.174211049598513 0.165684982617962 0.161520283942998 0.166155085460073 0.164684500316650 0.163135421047372 0.184563074125327 0.173243699878201 0.168092636747546 0.164388387445712 0.161690580129052 0.176453861475454 0.175431873199828 0.164984050458432 0.176457093703019 0.168448593115524 0.164147237108002 2 0|2 /|- 9059417 9060319 9059870.4 9058829 9061694 - gene protein_coding_gene FALSE TRUE AT2G21120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38730.1); similar to Os06g0715700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058587.1); similar to Os05g0430700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055625.1); similar to Protein of unknown function DUF803 [Medicago truncatula] (GB:ABE83665.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.183642256216455 1.87597143000675 0.0877230182702576 1 0.917010996077929 16.4029369168238 0.183642256216455 0.0905886862073794
AT2G48010_at 5.2173614462686 5.62181841082083 5.33000425811317 5.58700622444286 5.0338235219602 5.77981907665506 4.63313295569465 5.49058382554117 5.80362010078022 5.57684782326209 4.92767767249409 4.65933125930675 5.1266352140877 4.72531128655746 4.60394055451084 5.4720101711181 5.00244171334992 5.06483693869013 5.75710336220225 0.200646185975635 0.197983848357254 0.198663979353629 0.198710168930504 0.198983132622171 0.207273841985626 0.196699798262676 0.206730329440490 0.203802543670134 0.196767354401041 0.202027769112695 0.200083865214709 0.202982727606609 0.198517291932127 0.207730715769271 0.199682472443206 0.203576277246054 0.199032299940982 0.197325119261363 2 2 + 19649822 19650360 19650144.273 19648447 19650561 + gene protein_coding_gene FALSE TRUE AT2G48010.1 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase receptor-like serine/threonine kinase (RKF3) similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11050.1); similar to putative receptor-like serine/threonine kinase [Man (GB:AAW81714.1); similar to Os01g0384300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043097.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.286405775052819 -1.87570257234485 0.0877627025721103 1 0.916633852635854 10.6668421466100 -0.286405775052819 0.213452023664091
AT1G29750_at 5.37439319827001 4.73729802905288 4.90554111927481 4.9095212854274 4.92926812754499 4.84262459313512 4.71843602970424 4.44064900394129 4.9344597386498 4.76780990130747 4.99589229890963 5.46225359935196 5.10494270774918 5.22287509782036 5.51474689685207 5.32066789210457 5.42144708045894 4.80987229712488 4.99854978828782 0.189802678567982 0.192356138312853 0.197766698786138 0.192758307490750 0.191006551143186 0.192114118706251 0.208588636172220 0.187355853021060 0.200318434120779 0.196584839772011 0.186343379788333 0.198835279194061 0.187969091209136 0.193640753688946 0.200983215956458 0.186343379788333 0.200865189289601 0.197933572524564 0.197305785802496 1 1 - 10414241 10414643 10414450.5 10413866 10420509 - gene protein_coding_gene FALSE TRUE AT1G29750.1|AT1G29750.2 RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase|RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / protein serine/threonine kinase Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains. similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14840.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07650.1); similar to serine/threonine protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G53420.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.205179403575781 1.87560873987298 0.087776556450569 1 0.916502233888358 9.92314661156624 0.205179403575781 0.121209793013005
AT1G72100_at 0.445743566620842 0.35845274109047 0.196362174994257 0.220081980321818 0.37797719391681 0.73643564630315 0.462660488996219 0.615676461867556 0.858604356835059 0.712252360598146 0.507007301614247 0.816446513627005 0.74541755295002 0.817633652812411 0.750687983066353 0.287764689899058 0.797533912005622 0.663381162342027 1.21210368927275 0.22356430507547 0.22466987596767 0.225887430343693 0.227621471118534 0.231549247128000 0.223893529177346 0.223534092289935 0.22658320827744 0.223534092289935 0.232500604697366 0.224926367356727 0.230190897111356 0.235354268627102 0.223534092289935 0.234340708767738 0.228134332473351 0.229637638240315 0.237944560936433 0.223534092289935 1 1 + 27131809 27132426 27132099.273 27130874 27132640 + gene protein_coding_gene FALSE TRUE AT1G72100.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22600.1); similar to H0823A09.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66906.1); similar to OSJNBb0086G13.7 [Oryza sativa (japonica cultivar-group)] (GB:CAD41023.1); contains InterPro domain Apolipoprotein/apolipophorin; (InterPro:IPR013326); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -0.171169219311078 -1.87560538075324 0.0877770524445018 1 0.916497522110108 1.22711756423468 -0.171169219311078 0.0692410432575734
AT2G41810_at 1.47019656266059 1.42671796730998 1.46330054512111 1.72811737445832 0.782684601105621 1.41381205537621 1.11436278336438 1.27971346301549 1.19242850378868 1.69744839437584 1.07329545103252 0.887731851259784 1.07091369563870 0.975604206585339 1.35020825221519 1.14301386143703 1.04031745845604 1.44448761632928 1.78743935696843 0.214344262598583 0.216811648327875 0.213504221473201 0.211276417886558 0.223357903850415 0.213859460003127 0.21753084893597 0.214847435463169 0.217380902304947 0.215604019477149 0.209335535850553 0.217154566058776 0.209425810645071 0.209335535850553 0.210503204068517 0.211143392565143 0.216064512495010 0.216100507946497 0.210491878967226 2 2 - 17446596 17447387 17446892.818 17446452 17448428 - gene protein_coding_gene FALSE TRUE AT2G41810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.205838959665355 -1.87552081077729 0.0877895405521924 1 0.916378898585325 2.67601415279991 -0.205838959665355 0.122084031209402
AT3G61440_at 12.1403165398623 12.2163808192727 12.4054066881726 12.3698276445282 12.0076945902859 12.0215241834106 12.2855440624537 12.3988575361398 12.0659354700329 12.2957826789524 12.4960498343796 12.5229689865449 12.4198007712641 12.5217170212252 12.5661415192589 12.7198549736055 12.5028471828295 12.4937357853784 12.1249418685803 0.0575705596304009 0.0570694931916979 0.0580012978761048 0.0581942177805299 0.060452451482031 0.0573715171248422 0.0614986155799802 0.0598282094544045 0.0611396113472273 0.0619701349537154 0.0563322405744536 0.0563172056624819 0.0564659276174743 0.057745487715998 0.0564859822092987 0.0563172056624819 0.0616796485570309 0.0578266678748695 0.0583829905258335 3 3|0 +|/ 22747687 22748693 22748031.75 22746722 22748953 + gene protein_coding_gene FALSE TRUE AT3G61440.1|AT3G61440.2 ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1); L-3-cyanoalanine synthase/ cysteine synthase|ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1) Encodes a cysteine synthase isomer AtcysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.1); similar to Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula] (GB:ABE80163.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859)|similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.1); similar to beta-cyanoalanine synthase [Hevea brasiliensis] (GB:AAP41851.1); contains InterPro domain Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) 0.154504020311383 1.87540381765040 0.0878068191506914 1 0.916214800278814 24.5769987655987 0.154504020311383 0.0245242601510538
AT1G29790_at 6.93713752551998 7.7443760497525 6.95746014553161 7.4004387429192 7.58289194201198 7.96159266201088 7.2346024170082 7.93676115077055 7.96387753177245 7.55874309614561 6.73552383263086 6.9662834184328 7.80305920217476 7.61584165910148 6.66704221815552 7.32211704697522 7.67310316343652 7.18467608568348 7.9550702660552 0.193475048028157 0.193180791800484 0.199714327643428 0.195279342802926 0.192510289528624 0.199068899718776 0.197368939843484 0.196747443407331 0.200287948405657 0.199502901268774 0.201607341229120 0.197345295147418 0.205154931268464 0.196316674195395 0.20476318292714 0.192331524334028 0.199030316406802 0.201280190910539 0.199140191362868 1 1 + 10430714 10431100 10430884 10429961 10432018 + gene protein_coding_gene FALSE TRUE AT1G29790.1 similar to ATRAD3 (Arabidopsis thaliana Ras Associated with Diabetes protein 3) [Arabidopsis thaliana] (TAIR:AT5G40830.2); similar to Os10g0578600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065501.1); similar to hypothetical protein [Oryza sativa] (GB:AAG46168.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB48033.1); contains InterPro domain Tetraspanin; (InterPro:IPR008952) -0.283782274489155 -1.87499977172924 0.0878665163539645 1 0.915648109196476 15.0053339759314 -0.283782274489155 0.210836069736623
AT4G02530_at 10.4612860311115 10.3833402991601 10.0632875466218 9.88327225695327 10.4883817988297 9.98915896732547 11.4383449052349 11.0945181186974 10.9092087129455 11.0727097747887 11.4877819189800 11.5340018767560 10.8871818410463 11.1633349551448 11.8422716560135 11.2701981468941 10.8914978911172 11.2687136465198 10.8639196396861 0.0919463356188583 0.091387900856413 0.0938699836774335 0.0930131777150888 0.0892203566156566 0.095830143526444 0.0908519154911505 0.0900796898302656 0.099899609744589 0.091645770817596 0.0942273155938462 0.0898050151607145 0.0933188895481855 0.0902381327201203 0.0913297502965562 0.0910304681588571 0.0936651542870407 0.0915807362569207 0.0894600242805992 4 4|0 -|/ 1112388 1113910 1113337.1 1112141 1114029 - gene protein_coding_gene FALSE TRUE AT4G02530.1 chloroplast thylakoid lumen protein Identical to Thylakoid lumenal 16.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O22773;GB:Q8L985;GB:Q94BU6;GB:Q9M110); similar to Os06g0705100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058514.1) -0.196918581849775 -1.87457080985302 0.0879299357134879 1 0.915046534717938 21.5960664658413 -0.196918581849775 0.110256511608728
AT2G02680_at 0.844183743050709 1.08999726694769 0.561683087618152 0.94958537415129 0.436939078450761 0.823477512745966 0.661552791960983 0.533842216489648 1.11346038871911 1.19872461807741 0.640170062087835 0.689226169127624 0.917493706432745 0.468929791892401 1.00685056697348 0.888583695617314 1.17752224156449 1.30574995708160 1.24376942587438 0.198058522702921 0.197468978314654 0.19868524121891 0.207436609827080 0.201928221217227 0.201872989831701 0.208021726351939 0.206077029793951 0.195704702346392 0.208286881247714 0.202753166166872 0.200950637110610 0.204157725574207 0.196397799546662 0.205025970570172 0.196749923801519 0.208681466745608 0.207225766160912 0.204349130995640 2 2 + 747173 747634 747391.273 745774 748572 + gene protein_coding_gene FALSE TRUE AT2G02680.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02640.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02610.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G02690.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.193987555873582 -1.87427244141967 0.08797407246726 1 0.914628141808108 1.77372459296231 -0.193987555873582 0.106201776851741
AT3G45980_at 10.0629103632927 10.2166360443713 9.90562587389294 9.90710620596807 10.4025777808947 10.2025468340957 10.0853277443203 10.0309736047257 10.5850887119972 10.1332295043195 10.8715107587913 10.9311201582235 10.5131848723178 10.7059964654401 10.7490743005026 10.7100670833244 9.97955522999782 10.3933203223284 10.1576380026550 0.109050322546968 0.106896189738005 0.109634430089105 0.107575289490212 0.109302549862780 0.116447588825786 0.108021816874455 0.111661256466959 0.126041913157586 0.118571535349571 0.112747364986726 0.111417232704885 0.113631259389813 0.114831210608871 0.113373245655364 0.111306269424658 0.115279922226813 0.113789438316901 0.110885841538815 3 3 - 16908485 16908866 16908591.455 16908272 16908998 - gene protein_coding_gene FALSE TRUE AT3G45980.1 histone H2B Identical to Histone H2B.6 (HTB9) (H2BAt) (H2B) [Arabidopsis Thaliana] (GB:O23629); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT5G59910.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) 0.160122738538614 1.87418367617597 0.0879872071781112 1 0.914503675019513 20.55107008404 0.160122738538614 0.0446603524359739
AT1G79880_at 5.39201183644377 5.67499004279095 5.49072065129659 5.44351482860123 5.8570265900202 5.7025193262839 5.35189383186086 5.11318949669489 5.62497125670951 5.73966229005656 5.01238479582066 5.2883981754483 4.99259511614911 4.92660196076822 4.60572761928664 5.20807212356633 5.35869043797795 4.88837666349436 5.49018718548006 0.222348053859137 0.224789353821998 0.214023780076864 0.220883997912608 0.214176921300846 0.213223131395985 0.213457448126091 0.217351329901754 0.225672866134892 0.221036782627849 0.218697395915187 0.218689926167863 0.215459253893555 0.220331517734155 0.226507839636900 0.219116512778706 0.220283270787589 0.211515805828711 0.222560438885883 1 0|1 /|- 30051356 30051827 30051656.111 30050921 30053271 - gene protein_coding_gene FALSE TRUE AT1G79880.1|AT1G79880.2|AT1G79880.3 La domain-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G32720.1); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to Os04g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053207.1); similar to hypothetical protein DDBDRAFT_0204655 [Dictyostelium discoideum AX4] (GB:XP_640625.1); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G32720.1); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to Laa-A-prov protein [Xenopus laevis] (GB:AAH98983.1); similar to Unknown (protein for IMAGE:6932222) [Xenopus laevis] (GB:AAH84839.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G32720.2); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to RNA binding protein required for maturation of tRNA and snRNA precursors; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen; Lhp1p [Saccharomyces cerevisiae] (GB:NP_010232.1); similar to Os04g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053207.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.171371834374286 -1.87402858898577 0.0880101599643846 1 0.914286218071121 10.8299230449887 -0.171371834374286 0.0699015128421859
AT3G05540_at 0.919814576466296 1.21783612779815 1.34497496801480 1.15455580807120 0.752326385267432 0.947150661407979 1.04632595507699 1.42822887014365 1.06602664358881 1.39513421028466 0.785357497375283 0.648181374274104 0.99394610549728 0.761515755421175 0.895778072383 0.908703148815587 0.986666644111163 0.933223655542812 0.943935056473418 0.222137375828235 0.235308373097149 0.224815951404948 0.222895979404243 0.222612962821394 0.223977949958469 0.218945886374324 0.226398297072667 0.228838697056720 0.221414116773899 0.222199558651975 0.226614551055258 0.225006997933888 0.222108962196665 0.224434435899960 0.219508347564567 0.22473474078926 0.224673846128452 0.229728164151051 3 3|0 -|/ 1606509 1608010 1606976.625 1606493 1608036 - gene protein_coding_gene FALSE TRUE AT3G05540.1 translationally controlled tumor family protein similar to TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) [Arabidopsis thaliana] (TAIR:AT3G16640.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q5J907); contains InterPro domain Translationally controlled tumor protein; (InterPro:IPR001983); contains InterPro domain Mss4-like; (InterPro:IPR011057) -0.187079932559499 -1.87392934262603 0.0880248512399976 1 0.914147063266444 2.1010034199274 -0.187079932559499 0.0961789554005143
AT4G09460_at 7.25319832625603 7.65636262069642 6.20527553869251 6.04757345555386 6.71342920398218 6.80875653957844 4.43555455064845 5.06178681148193 6.75053322004806 5.08410215488297 6.66247561101469 6.6766504442181 6.2736564710286 6.81528121463036 5.69798615168687 6.86748576142632 5.63395768918926 5.46733212172105 6.69287819702668 0.245990316680505 0.236458390673127 0.239407726612601 0.242059839869558 0.243902955400271 0.246070497995423 0.239289928423768 0.240538224613399 0.251037509662875 0.252641092310376 0.241472047358392 0.236175125627841 0.249750762109292 0.239450947363934 0.236188461916011 0.240648897296302 0.245594664735379 0.238883786988578 0.24099053727648 4 4 + 5993139 5993987 5993708.545 5992963 5994255 + gene protein_coding_gene FALSE TRUE AT4G09460.1 ATMYB6 (myb domain protein 6, myb domain protein 8); DNA binding / transcription factor Encodes myb6 DNA-binding protein. similar to HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10), DNA binding [Arabidopsis thaliana] (TAIR:AT1G35515.1); similar to myb-like transcription factor 1 [Gossypium hirsutum] (GB:AAN28270.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.214024216488103 1.8737478182446 0.0880517278320469 1 0.91389255410965 12.4915876510780 0.214024216488103 0.132775398923032
AT3G09220_at 3.39900658270314 3.1942382818928 3.09967063679011 3.19559630367009 2.07434620967859 2.92702587106558 2.55181748109818 3.20577080978839 3.43567184534318 3.85940616620595 2.93700482939945 3.44992533443154 3.09528220498446 3.16478843973636 3.30636395947754 3.03539298009967 3.5057233634658 3.24522321819871 3.15000328346541 0.247161116291038 0.24790749452335 0.249905236123805 0.246421266257018 0.246869818331743 0.250632630602551 0.246199295714239 0.245388301638683 0.248758356369952 0.239089835890098 0.241641620749028 0.239089835890098 0.247595845661612 0.245303527221911 0.247754780720700 0.241678435521301 0.250586100707707 0.247435504627204 0.241066044042939 3 3 - 2827523 2828134 2827850.364 2827245 2830548 - gene protein_coding_gene FALSE TRUE AT3G09220.1 LAC7 (laccase 7); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to laccase family protein / diphenol oxidase family protein [Arabidopsis thaliana] (TAIR:AT5G01050.1); similar to LAC8 (laccase 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G01040.1); similar to Multicopper oxidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97304.1); similar to laccase family protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA97328.1); similar to putative copper ion-binding laccase [Pisum sativum] (GB:ABC59623.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.263889628675093 -1.87342253797445 0.088099907875637 1 0.913436518483228 6.30551242520038 -0.263889628675093 0.190033354691232
AT3G33064_at 1.07570665116792 0.93649906401831 1.45071783746246 0.621033462788198 0.546603072713786 0.727117810467164 0.86232408652817 1.19584275696029 1.15871564023570 1.30085872335163 0.94412184845878 0.713929016140269 0.713455244378918 0.468281651678041 1.00754677193029 0.865645645540139 1.56172074586606 0.982738933493742 1.13746675998553 0.252047808392760 0.25392545780585 0.257484018627316 0.253066817828515 0.247940798421814 0.254856304401601 0.256164576639769 0.259941128596743 0.264717980161410 0.280527531938346 0.273267081329636 0.254381416166045 0.247940798421814 0.286675779763129 0.247940798421814 0.247940798421814 0.286059017099320 0.271791519862837 0.264511690259489 3 3|0 +|/ 13623948 13624023 13623986 13623922 13624638 + gene protein_coding_gene FALSE TRUE AT3G33064.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41770.1) -0.236529409741305 -1.87337519366483 0.088106922467449 1 0.913370145904831 1.98007743778499 -0.236529409741305 0.159696282877139
AT3G05060_at 5.75328947840067 5.75830102738548 5.11869596451382 5.67044350519732 5.25489395862718 4.95047682716358 6.00204876027996 5.76917787382673 4.82355950290371 5.12425161235763 4.54630831655213 5.50143814388305 5.05881889515149 5.07465943291747 5.94569989885412 5.14522479137571 5.1303035860461 4.79392318552417 4.99180896189663 0.204147234252112 0.212203841457200 0.212408136619578 0.206872106278821 0.211472548803736 0.209203699156966 0.209430935507275 0.214891018510695 0.225495788718527 0.207611711267051 0.204147234252112 0.221979210798179 0.215382778092232 0.209905475304074 0.213465166172145 0.204147234252112 0.210439218775642 0.207602102096509 0.208317938068549 3 3 - 1413221 1413980 1413761.909 1412873 1415972 - gene protein_coding_gene FALSE TRUE AT3G05060.1 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G27120.1); similar to Pre-mRNA processing ribonucleoprotein, binding re (GB:ABE85418.1); similar to matrix attachment re (GB:CAK22424.1); similar to MAR-binding protein [Nicotiana tabacum] (GB:BAB41076.1); contains InterPro domain NOSIC; (InterPro:IPR012976); contains InterPro domain NOP5, N-terminal; (InterPro:IPR012974); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region; (InterPro:IPR002687) -0.201201524431184 -1.87336099183656 0.0881090267281455 1 0.913350236337173 10.5993761195947 -0.201201524431184 0.116262484718655
AT2G42150_at 2.10712273241226 1.73971770189903 1.78180445464574 1.67151932324201 1.47546556655165 1.79814484098414 1.85833258834565 2.47168165617513 1.98301960953457 2.07549439177696 2.03209045026033 2.13639289945153 1.78434058393901 1.72244086325783 2.18684545931243 1.89912058475683 2.13539268443550 2.35830674236048 2.25379823659199 0.188639943795164 0.190487571963701 0.190331122099011 0.194537307629272 0.186098893376151 0.195230899207020 0.1922557094762 0.192448533902597 0.18720162104784 0.198812835885595 0.193633528209721 0.187740434730578 0.197307293658633 0.186530207342733 0.192336905236242 0.184464125806945 0.192391169452004 0.187525621848973 0.187545754055241 2 2 + 17581087 17581590 17581319.545 17579447 17581757 + gene protein_coding_gene FALSE TRUE AT2G42150.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57980.1); similar to Os07g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060010.1); similar to Os08g0510700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062208.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10737.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.217358959590780 -1.87253418147759 0.0882316135156922 1 0.912191250902073 3.93095878941841 -0.217358959590780 0.137081607649569
AT1G70350_at 3.15482551288694 3.54125586175783 3.33426021079006 2.996527836619 3.4789969551202 3.16766829964662 3.76663087550586 3.68921356153823 2.85920181661772 2.28684052985401 2.55188805807543 2.72825984053783 2.56696264755401 1.83678039241294 2.49413562638479 2.82689865319284 2.32320461950163 2.59208061054084 2.59982742547187 0.234293622307299 0.239961020705887 0.238425975883664 0.237858317628120 0.231111887086807 0.244942126844944 0.239996094354749 0.238247207639119 0.242379903698969 0.230771702021692 0.230146753620320 0.230020710292174 0.228369777613052 0.239775883803379 0.241917146296252 0.228581158293994 0.238113027179561 0.253094915437913 0.235395784450044 1 1|0 -|/ 26511512 26511898 26511736.556 26510777 26511948 - gene protein_coding_gene FALSE TRUE AT1G70350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17310.1); similar to Os01g0738000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044185.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89009.1) -0.192774206000538 -1.87248993286858 0.0882381784419825 1 0.912129231933316 5.92716383756955 -0.192774206000538 0.104738902157931
AT1G32060_at 12.7174809630643 12.8656029225126 12.7039830513413 12.7834890954127 12.7927523507999 12.5758464549787 13.5196247152722 13.5001003751934 13.3388407480208 13.6389926336383 13.6613585799752 13.6335037439361 13.5249970388369 13.3457289882848 13.5143041077077 13.7274443001603 13.4851719582392 13.6700077630847 13.3892256926160 0.0752625390821218 0.070626196755711 0.0739182700912426 0.0721717495432009 0.069925848782655 0.076762902562723 0.0754976463162209 0.0704077843819978 0.0822588745204936 0.069925848782655 0.069925848782655 0.069925848782655 0.070823917283376 0.0741144472475656 0.0737524669991593 0.069925848782655 0.07829459923355 0.0746812589950616 0.069925848782655 1 1|0 +|/ 11533683 11534338 11534072 11532517 11534619 + gene protein_coding_gene FALSE TRUE AT1G32060.1 PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding Identical to Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK) [Arabidopsis Thaliana] (GB:P25697); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT3G27440.1); similar to Phosphoribulokinase, chloroplast precursor (Phosphopentokinase) (PRKase) (PRK) (GB:P26302); similar to phosphoribulokinase; ribulose-5-phosphate kinase [Triticum aestivum] (GB:CAA41020.1); similar to phosphoribulokinase (EC 2.7.1.19) - wheat (GB:S16585); contains InterPro domain Phosphoribulokinase; (InterPro:IPR006082); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083) -0.161028151970522 -1.87199226249530 0.0883120460415139 1 0.911431742951193 26.4453604501318 -0.161028151970522 0.0476106981544222
AT2G42670_at 5.21980430802488 5.28753828334574 4.80440777232127 5.23593455271878 5.03281533897727 5.1715471286781 4.2617918896026 4.70580475904547 5.14195435228305 4.59974885006087 5.04817192179884 5.11493836162166 5.3687995255091 5.44582633449731 4.7823062967765 5.30615056548875 5.07994693395747 5.06076896992847 5.10762844172662 0.205632147843686 0.208892801054065 0.213221702891733 0.218060153689219 0.207287288034057 0.207621239994082 0.204602588821456 0.204268640103551 0.207330548008630 0.213055327685377 0.204268640103551 0.204268640103551 0.213655400632451 0.205751689027680 0.207592603256283 0.20466558773834 0.208502968901849 0.217060912571501 0.212777449510843 2 2 - 17779126 17780309 17779602.727 17778853 17781724 - gene protein_coding_gene FALSE TRUE AT2G42670.1|AT2G42670.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58670.2); similar to OSJNBb0040D15.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04411.2); similar to Os04g0151900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052116.1); similar to H0820C10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65971.1); contains InterPro domain Protein of unknown function DUF1637; (InterPro:IPR012864); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.196763893588134 1.87190728222967 0.0883246650692123 1 0.911312651091228 10.0152759182830 0.196763893588134 0.110429649788801
AT3G15480_at 9.24788843877907 9.58933662423085 8.3918276246801 8.53790709947846 9.30069956680328 9.20647998576441 9.57501389416656 9.8182639841643 9.70510357653501 9.40878865886028 10.3325479635627 10.1626805613230 9.7678791173264 9.84057427419193 10.1583456731861 9.68542888783267 9.22601111925377 9.6687806958552 9.41217268680698 0.113399468504427 0.108301434400044 0.116083718750670 0.115847936472402 0.115142445544820 0.111541688594346 0.112737463113920 0.110354065707186 0.112067022300717 0.112703884399015 0.109623238052234 0.110856374560807 0.115022617614534 0.112355021105126 0.113477363883700 0.108370228675506 0.113797629467306 0.111251616608201 0.112320130979396 3 3 - 5226502 5227626 5226858 5226255 5227796 - gene protein_coding_gene FALSE TRUE AT3G15480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52910.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) -0.175902218493955 -1.87154503525914 0.0883784750352117 1 0.910805024326292 18.890411824242 -0.175902218493955 0.0785397513880373
AT3G57570_at 4.46202119344082 4.31044278653927 4.38012762717709 4.41843918887299 5.14691011551651 4.88080006253359 5.13507392308703 5.1902336130975 4.17265515532180 4.10125071624432 3.50395306441446 3.67054837347637 4.21374921488388 4.69333700207097 3.17035263284576 4.79842247113539 3.82023170301037 3.50793251486128 4.27129354399688 0.231665489325390 0.234917486408708 0.249587182376014 0.236818701546317 0.241757936987092 0.247937650616755 0.237999261570707 0.234845987442345 0.240981601149607 0.236769847950187 0.231644322908653 0.231929767845571 0.237928893077220 0.238594252961638 0.236419574428001 0.231644322908653 0.244085192006922 0.233895567326970 0.241534063220256 3 0|3 /|+ 21330247 21331034 21330551.7 21323475 21331276 + gene protein_coding_gene FALSE TRUE AT3G57570.1 binding similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93779.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.163645448474902 -1.87120518050669 0.0884289861543727 1 0.91032881815099 8.79253056908725 -0.163645448474902 0.054257795626975
AT2G30600_at 8.94034275266708 8.86372840898638 8.22320143147012 7.9397531639396 9.62874294770286 9.06382993941244 8.16105170534676 7.65719702248361 9.29326797150126 8.32493294913395 9.8551232222702 9.1167687008713 8.90500276869592 9.20682666571708 8.87689893384115 8.23869038275873 7.94784196750541 9.04510056957312 8.68408412403184 0.122612091934238 0.122816414175656 0.12606096800435 0.123294579731370 0.123200854600636 0.127938265443246 0.122436715122695 0.135286376349075 0.127069081535834 0.128797954785474 0.121346788602405 0.120322573734805 0.121191305096342 0.121429115016185 0.121744444284207 0.120858563548070 0.133462584286404 0.121336835944767 0.125046178919059 2 2|0 +|/ 13045989 13048520 13047538.4 13043953 13048761 + gene protein_coding_gene FALSE TRUE AT2G30600.1|AT2G30600.2|AT2G30600.3|AT2G30600.4 BTB/POZ domain-containing protein|protein binding similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46260.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV43802.1); contains InterPro domain BTB/Kelch-associated; (InterPro:IPR011705); contains InterPro domain Coagulation factor 5/8 type, C-terminal; (InterPro:IPR000421); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.219952600721034 1.87077497191669 0.0884929642341069 1 0.909726065721253 17.3929609213143 0.219952600721034 0.140505992732786
AT1G18340_at 4.45775631807385 4.14966099794093 4.11310912395777 4.03009935031482 4.15010365602387 3.79684495570563 4.77824843330191 4.87494596924677 3.77717953594057 3.90904462039172 4.14992212773173 4.57511517554853 4.00759254356162 3.81360923659800 4.56195527738302 4.20390985379303 3.41873919502361 3.77773736693773 3.95109264111786 0.223187475750877 0.214177003111313 0.223473491703975 0.221130641040060 0.214241710415613 0.237102119724665 0.217269460126521 0.214327136275131 0.217337516744338 0.219330638147179 0.218946784204237 0.218781751089564 0.217934241378589 0.215225456426841 0.214365064398672 0.216643658588388 0.219444272151263 0.214866749020593 0.218293966413624 1 1|0 -|/ 6311796 6313137 6312433.833 6311476 6313924 - gene protein_coding_gene FALSE TRUE AT1G18340.1 basal transcription factor complex subunit-related similar to Os02g0125800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045748.1); similar to general transcription factor IIH, polypeptide 3 [Dictyostelium discoideum AX4] (GB:XP_643618.1); contains InterPro domain Transcription factor Tfb4; (InterPro:IPR004600) -0.179073330109119 -1.87065676030150 0.0885105514191336 1 0.909560454304332 8.2651851986818 -0.179073330109119 0.0840617320842957
AT2G18876_at 4.55891974492604 5.23600039188609 3.77413885588228 4.53351921142416 5.26627649621786 4.82111864067334 4.14073474083644 3.61623205890744 3.58354263067998 4.55589502640404 4.12538252622089 5.5481430192897 4.1787292460005 4.77407475686965 4.73614334184008 5.07934413588053 3.86357519687065 3.77539957121045 4.31474788567820 0.543091300021722 0.565659367850287 0.543091300021722 0.543091300021722 0.543091300021722 0.619269310854737 0.543091300021722 0.546576984271733 0.584750292088105 0.543091300021722 0.576356299833156 0.543091300021722 0.543091300021722 0.543091300021722 0.543091300021722 0.543091300021722 0.630813268086388 0.582846916631197 0.543091300021722 2 2|0 +|/ 8176887 8177053 8176951.667 8176630 8179605 + gene protein_coding_gene FALSE TRUE AT2G18876.1|AT2G18876.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57410.1); similar to hypothetical protein MtrDRAFT_AC135801g19v1 [Medicago truncatula] (GB:ABE82185.1); contains domain SUBFAMILY NOT NAMED (PTHR21736:SF5); contains domain FAMILY NOT NAMED (PTHR21736)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57410.2); similar to hypothetical protein MtrDRAFT_AC135801g19v1 [Medicago truncatula] (GB:ABE82185.1); contains domain SUBFAMILY NOT NAMED (PTHR21736:SF5); contains domain FAMILY NOT NAMED (PTHR21736) 0.284747680131239 1.87059432978233 0.0885198409493709 1 0.909472992736305 8.82411459519098 0.284747680131239 0.212537993084021
AT4G33520_at 6.08466810174445 6.00211723352973 5.86688011001163 5.50827025030882 5.75657606019232 5.83286501435277 6.48630343533856 6.61689696963454 6.10771781256145 6.17383579410681 6.39773438144426 6.38259766838825 6.38980835861607 6.26950182473542 6.70585334940713 6.57240782579769 6.2605618285858 6.14469472997797 6.2435939270639 0.126454788188912 0.12766606169405 0.138208245796248 0.132369210759424 0.128694592918347 0.127547470850138 0.132541116265217 0.129625995151738 0.127970781790328 0.129141296860096 0.128737960363764 0.129774181706591 0.129857133743681 0.126551373694494 0.126737110056963 0.128643847344264 0.129750674415143 0.129979968213997 0.128530474416274 4 4|0 +|/ 16119167 16125749 16122735.8 16118899 16126154 + gene protein_coding_gene FALSE TRUE AT4G33520.1|AT4G33520.2|AT4G33520.3 PAA1 (metal-transporting P-type ATPase 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism|PAA1 (metal-transporting P-type ATPase 1) Encodes a putative metal-transporting P-type ATPase. similar to PAA2 (P-type ATPase of Arabidopsis 2), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT5G21930.2); similar to putative potential copper-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD09318.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121)|Identical to Putative copper-transporting ATPase PAA1 (EC 3.6.3.4) (PAA1) [Arabidopsis Thaliana] (GB:Q9SZC9;GB:O48600;GB:O81870); similar to PAA2 (P-type ATPase of Arabidopsis 2), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT5G21930.2); similar to Na+/K+ ATPase, alpha subunit (ISS) [Ostreococcus tauri] (GB:CAL55853.1); similar to putative potential copper-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD09318.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P type cation/copper-transporter; (InterPro:IPR006403); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type copper-transporter; (InterPro:IPR001756) -0.170501379193541 -1.87051198239398 0.0885320954388708 1 0.909357630868182 12.302044233779 -0.170501379193541 0.0688510443069328
AT1G16850_at 3.16561949185804 3.49820915950891 2.24387098633947 2.30445456779194 2.39915322672711 2.12819358522282 2.53766864952096 2.81334758434531 1.87897504682782 2.18144234346378 2.07473317268111 2.54252784542396 2.37565063006615 2.88230379581232 2.09630678786735 3.423598229777 2.35076306153699 2.52647926409839 2.42939699491627 0.233705740057188 0.231742162370551 0.230802985988492 0.249834739654472 0.228887423676824 0.249942307283435 0.232891609212781 0.251982713030307 0.232145805891704 0.237785482859915 0.235245499743721 0.233699042775611 0.231418993489031 0.232133826586057 0.245456620434837 0.240199606226573 0.239763237169664 0.237399312451309 0.232979593732355 1 1|0 -|/ 5765065 5765545 5765314.4 5764800 5765644 - gene protein_coding_gene FALSE TRUE AT1G16850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64820.1); similar to 80C09_13 [Brassica rapa subsp. pekinensis] (GB:AAZ41824.1) -0.18200962155801 -1.87040910877937 0.0885474067207858 1 0.909213516796093 4.98497306148625 -0.18200962155801 0.0888672785513768
AT3G26690_at 2.04641691841626 2.02105664249248 2.25442311755734 2.88683196252965 1.67508271384612 1.98705177810987 1.69916152168537 1.85821689902724 2.35556421593408 2.35129850434607 2.37981458838614 2.94083315641226 2.13198489610917 2.13293227866231 2.44599530021609 2.22448573904992 2.31874142691573 2.58236513828217 2.11566873037576 0.177318298383743 0.186850155161816 0.174253503147331 0.173289430880732 0.175201312161466 0.176198943449181 0.172851671254459 0.179204604083592 0.175016041057642 0.174065691781015 0.174928200206259 0.183868162702838 0.178645953985037 0.178858671467901 0.174787661911797 0.171493803759794 0.171716055061844 0.183954162387997 0.171653091063436 3 3|0 -|/ 9805658 9806592 9805879 9805490 9806952 - gene protein_coding_gene FALSE TRUE AT3G26690.1|AT3G26690.2 ATNUDT13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13); hydrolase Identical to Nudix hydrolase 13, mitochondrial precursor (EC 3.6.1.-) (AtNUDT13) (NUDT13) [Arabidopsis Thaliana] (GB:Q52K88); similar to ATNUDT12 (Arabidopsis thaliana Nudix hydrolase homolog 12), hydrolase [Arabidopsis thaliana] (TAIR:AT1G12880.1); similar to Os11g0531700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068011.1); similar to Os02g0520100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046973.1); similar to Nudix hydrolase 13, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22503.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.207550656445496 1.86943510181332 0.0886924945601565 1 0.907849229197755 4.38794080206947 0.207550656445496 0.125175762997191
AT1G32540_at 9.18205069897763 9.25891872628613 9.18986716249932 9.04982707310652 10.1441389628004 9.55360972517966 9.55904177165653 9.36274189548896 9.38549792004232 9.08435769388746 9.53954980480854 10.0116029754711 9.36484099582235 9.29835358392477 9.84209796774053 9.24136189471569 8.69500290461167 9.66260455990773 9.14965933230999 0.104586801740435 0.100733355551043 0.098541550273861 0.109139607623322 0.102678180133126 0.105162627245010 0.0987503286950593 0.102975324358895 0.102210236193189 0.107624483252648 0.0963310968289788 0.097964021155375 0.0976578771860502 0.100972842958676 0.100144921232466 0.0979656165624729 0.104789985665063 0.0980846868851631 0.0994653018945924 1 0|1 /|+ 11768422 11769533 11768795.714 11767484 11769878 + gene protein_coding_gene FALSE TRUE AT1G32540.1|AT1G32540.2 LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. similar to LSD1 (LESION SIMULATING DISEASE) [Arabidopsis thaliana] (TAIR:AT4G20380.7); similar to LSD-One-Like 1 [Brassica rapa] (GB:BAD95789.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735) 0.197047155794763 1.86941137942200 0.0886960309663124 1 0.907816005491214 18.744240410977 0.197047155794763 0.111183863001096
AT2G33845_at 8.10486859523067 7.80004118562551 7.88434619722238 8.05614281766015 7.09845678272598 7.00202013731804 6.89910072104887 7.2072657488322 6.65613754329065 6.06629417958308 6.83114598556747 6.68285953325546 6.5143488778319 6.77916207724522 6.8209122570615 6.81225506834454 6.63618740049603 6.44854394047182 6.30419107182426 0.212907766127645 0.20879867142454 0.220821955382705 0.211741809992209 0.204626950468126 0.215307788344626 0.205528751600957 0.205806624240971 0.222743626582361 0.217558224520203 0.214586995215482 0.207603288237739 0.205593320729505 0.209014576700006 0.205855654961483 0.204626950468126 0.222895339041068 0.209949477543306 0.219260797446631 2 2 + 14324878 14325735 14325272.545 14324752 14326465 + gene protein_coding_gene FALSE TRUE AT2G33845.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G28440.1); similar to Os01g0238600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042538.1); similar to unknown [Medicago sativa] (GB:AAZ32857.1); similar to Os01g0754100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044277.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.177945857674455 1.86930106260944 0.0887124781047084 1 0.907661507075845 14.0229725185914 0.177945857674455 0.0823964739131749
AT1G36060_at 1.30421268417102 1.09516977540471 0.893073187086068 1.18620005674247 1.30842161325456 1.17216712678450 1.51804286214229 1.40374939158074 1.97248579668185 1.17885429147164 1.35800064474588 1.32845947586621 1.32088631640753 1.22769047959787 1.71602496891963 1.14248031282480 1.1801589485207 1.57926530960391 1.37188262466636 0.228646096814355 0.220137784325270 0.228376258053938 0.221248854570971 0.222922650397718 0.219137839042751 0.224451597454246 0.242103125829004 0.232782678334245 0.222428385692846 0.222616404251347 0.224624828028813 0.226931425873333 0.219137839042751 0.22984476105305 0.220859221799772 0.223563872712648 0.226550367158794 0.221959181166819 1 1 - 13455957 13456498 13456209.455 13455708 13457543 - gene protein_coding_gene FALSE TRUE AT1G36060.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to RAP2.4 (related to AP2 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G78080.1); similar to transcription factor DRE-binding factor 2 [Gossypium hirsutum] (GB:AAT39542.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.17072413978513 -1.86929341492931 0.0887136184015773 1 0.907650796677558 2.66731044281284 -0.17072413978513 0.069491862758742
AT3G45130_at 3.36069256029916 2.99539144560257 4.20608344950211 4.09646949065092 2.72395778033317 3.05839263874926 2.71504321151930 2.47770695160137 2.60228572819555 2.82074026983000 1.98530942608559 2.23124636204541 2.08437035628763 2.44483721696047 2.36941866451423 2.13236447832548 2.51328012648267 2.81750584809336 2.32332325027916 0.252793136088196 0.252640379167763 0.273385415255566 0.271644954204802 0.247067592037808 0.247067592037808 0.256020927903054 0.247067592037808 0.248324773859402 0.249831641269151 0.247072820981701 0.248350317739139 0.255788917003546 0.254472937586309 0.256275280171393 0.247067592037808 0.250689375761443 0.251943549070268 0.259735271308036 3 3|0 -|/ 16524253 16524841 16524489 16523256 16528507 - gene protein_coding_gene FALSE TRUE AT3G45130.1 LAS1 (Lanosterol synthase 1); catalytic/ lyase similar to CAS1 (CYCLOARTENOL SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT2G07050.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78950.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to putative oxidosqualene cyclase [Cucurbita pepo] (GB:BAD34646.1); similar to oxidosqualene cyclase [Luffa cylindrica] (GB:BAA85267.1); similar to Oxidosqualene Cyclase [Panax (GB:BAA33462.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.187096220650525 1.86919248707403 0.088728668373393 1 0.90750945148471 5.65642117900769 0.187096220650525 0.0969160657643764
AT1G71691_at 0.778819933295631 1.29482038806276 1.27965032704102 1.23034255829104 0.748808666069128 0.882103034411579 0.757829167513215 1.10047224869480 1.24093970030342 1.59123977590411 1.14455367006861 0.815698536748651 1.21044180907825 0.758402230068917 0.64434753809861 1.07475552396683 1.26968219589483 1.44323151235250 1.63664585934306 0.194068187656079 0.200645186225950 0.1943243938633 0.197258197907591 0.199243789672179 0.198106158871446 0.196417558631653 0.199652455945136 0.198290186512080 0.201117737862896 0.209079840571099 0.197722218234753 0.201392626806961 0.199851949863971 0.212119536490628 0.197216940534116 0.200585924159016 0.203430921820348 0.198294306011753 1 1|0 -|/ 26953073 26953787 26953394 26952861 26955209 - gene protein_coding_gene FALSE TRUE AT1G71691.1|AT1G71691.2 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G33811.1); similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to Os05g0419800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055574.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); similar to Os08g0112900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060835.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087)|similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G33811.1); similar to Os05g0419800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055574.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); similar to Os08g0112900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060835.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.196114303043646 -1.86883765968990 0.088781597492572 1 0.90701255912055 2.27647957653149 -0.196114303043646 0.109976122450639
AT4G37630_at 2.82292914834422 2.74263653800237 2.40515160092545 2.79751948466135 2.52633940509322 2.20453477147188 3.34017629618726 2.68132608620867 2.71238388536146 2.64634564655926 2.53755690488017 3.05721023755439 2.26640730893902 2.67519176745084 2.7341037598301 2.87786107673796 2.41114067483341 2.0932000595369 2.48444345371273 0.219603507883955 0.210917172234967 0.221454661588917 0.218165692561329 0.212591555164440 0.214529937405777 0.221178727745035 0.222508842038398 0.218465249464434 0.219280660650939 0.211294716349505 0.213428628577478 0.213994731693 0.210088575945367 0.215904571785017 0.210088575945367 0.217171687340384 0.217871263793545 0.216953320884130 4 4 + 17680066 17680738 17680377.909 17679273 17681196 + gene protein_coding_gene FALSE TRUE AT4G37630.1|AT4G37630.2 CYCD5;1 (CYCLIN D5;1); cyclin-dependent protein kinase core cell cycle genes similar to CYCD1,1 (CYCLIN D1,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G70210.1); similar to Cyclin, N-terminal [Medicago truncatula] (GB:ABE77425.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.223093861569229 -1.86881456504813 0.0887850434946593 1 0.906980219430755 5.28806415082755 -0.223093861569229 0.144585207090645
AT1G70180_at 4.44161612401427 4.57327366684377 3.91786207334152 4.04880216082512 4.71583451484331 4.35142202919377 4.22440231343935 4.18523532996776 4.88553075326297 4.15275070672261 3.72500429875247 3.60077430913389 4.48314770948638 4.14895690589781 4.18102427350175 4.26293640125731 3.91212677476141 4.2115321235266 3.89492726172038 0.29707421566647 0.277017876978433 0.283836693101726 0.275462701874789 0.274744751160866 0.3049005556218 0.280966271768862 0.273981055183463 0.284015520564219 0.273081219750682 0.273081219750682 0.273081219750682 0.287314192413260 0.273081219750682 0.286360636202777 0.274543885658035 0.300624277877258 0.278378173266044 0.273081219750682 1 1|0 +|/ 26431729 26432098 26431916.125 26430004 26433024 + gene protein_coding_gene FALSE TRUE AT1G70180.1|AT1G70180.2 sterile alpha motif (SAM) domain-containing protein similar to SR45 (arginine/serine-rich 45), RNA binding [Arabidopsis thaliana] (TAIR:AT1G16610.1); similar to OSIGBa0130P02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67140.1); similar to Os04g0465000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053022.1); similar to hypothetical protein lpp2903 [Le (GB:YP_125205.1); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993)|similar to sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07170.1); similar to OSIGBa0130P02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67140.1); similar to Os04g0465000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053022.1); similar to hypothetical protein lpp2903 [Le (GB:YP_125205.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) -0.171516694188822 -1.86867296289563 0.0888061749499362 1 0.906781936419132 8.49568473827945 -0.171516694188822 0.071101994758833
AT1G63290_at 7.65116578452419 7.41701170650975 7.21914401272876 7.15380682350976 7.47528890396693 7.36939438021537 6.88601028077419 7.03815853467103 6.81519664734095 7.08165859460208 7.16038219733958 7.5026301631212 7.15756916461385 7.38736821175901 7.15790440633072 7.33312178935163 6.80816158992912 7.20547574676943 6.93749606434334 0.163551521890736 0.157535478670873 0.160169893128565 0.157535478670873 0.164285949252821 0.159523117145239 0.160521231115570 0.158139324088268 0.169868198996822 0.169288381501330 0.166642683958756 0.160347024912923 0.157535478670873 0.165817868704726 0.171127050571494 0.167913515929043 0.164695413965015 0.166526980265439 0.162400068967298 1 1|0 -|/ 23475786 23476716 23476079.111 23475514 23477304 - gene protein_coding_gene FALSE TRUE AT1G63290.1 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative similar to ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative [Arabidopsis thaliana] (TAIR:AT3G01850.2); similar to Ribulose-phosphate 3-epimerase, cytoplasmic isoform (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5-phosphate 3-epimerase) (PPE) (GB:Q9SE42); contains InterPro domain Ribulose-phosphate 3-epimerase; (InterPro:IPR000056); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060) 0.162807421687554 1.86814312541494 0.0888852842332351 1 0.90604007676185 14.3556777670695 0.162807421687554 0.0529048859468765
AT3G23350_at 0.72327528565265 0.682191223881343 0.293732868271798 0.630016582283323 0.336231088569515 0.489164983909545 0.482443049081095 0.530699350294798 0.795540686243462 0.38518453875754 0.467782606763105 0.432683657990289 1.03029862568265 0.268820803009054 1.0447719394134 0.201128945034835 0.625352844913436 0.754183050739012 1.13600499543765 0.208190547445720 0.208132987845995 0.210627430128831 0.208606846051063 0.204763778054416 0.204949044559732 0.206942324162983 0.210813626958789 0.212131499412337 0.206512289281376 0.204909502482679 0.212897725558447 0.210186705596849 0.208714825060565 0.204763778054416 0.206799972695551 0.206073713295888 0.211607855748307 0.207316043275580 3 3 + 8354190 8355176 8354801.273 8354111 8355208 + gene protein_coding_gene FALSE TRUE AT3G23350.1 similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT3G46540.1); similar to Os01g0841000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044763.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) -0.168240722044294 -1.86786728335799 0.0889264954520616 1 0.905653891537798 1.20865491199606 -0.168240722044294 0.0648648225600095
AT1G06200_at 9.63482097512613 9.73156644833291 9.75250452911235 9.78872618380055 9.9910924935786 9.75216005263736 9.8321066632189 9.84764402479895 8.93279093907005 9.5423657426638 9.649186812865 9.55618131716555 9.64272587360227 9.62735424014787 9.59773116681327 9.49454233093825 9.44362814138815 9.50837141819667 9.44010599529116 0.102398224147324 0.0997934829692489 0.100523247701320 0.0987114622012299 0.101790059406966 0.105138091361096 0.0995486130570825 0.09902328762906 0.108320178583936 0.104048831751718 0.102668258208247 0.0994301169778867 0.103248239677703 0.103069577944970 0.103815097824735 0.101043997093286 0.103827902932466 0.106889207246268 0.101973501274618 1 1 - 1894643 1895896 1895311.818 1894336 1896934 - gene protein_coding_gene FALSE TRUE AT1G06200.1 serine-type peptidase similar to serine-type peptidase [Arabidopsis thaliana] (TAIR:AT2G31140.1); similar to Mitochondrial inner membrane protease, subunit IMP2 (ISS) [Ostreococcus tauri] (GB:CAL55762.1); similar to OSJNBa0068L06.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01583.2); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056) 0.159731945272144 1.86763700514257 0.0889609128124271 1 0.905331517224853 19.2263540321497 0.159731945272144 0.0451277377292694
AT3G48710_at 4.27258149337186 4.92501114813206 5.02081509721927 4.87010040174421 5.73161475587333 5.21487986166542 4.70577117729291 4.2711645507087 4.73175279568719 4.68467481646315 4.71163953767084 4.59744097057879 4.44002083972506 4.95094941966542 4.37720838097841 4.97122163227902 4.56022634744436 4.79262709323766 5.16589852056703 0.191111205365452 0.201593372216052 0.204660137588952 0.192101307822910 0.194527798065156 0.195544166475201 0.197469876459848 0.188005338913923 0.182143296498794 0.188945101017523 0.181164563750219 0.181164563750219 0.193731242165427 0.187080437762708 0.184216809718332 0.183052731416605 0.181164563750219 0.193380202927712 0.189030439391077 3 3|0 +|/ 18054201 18054881 18054454.111 18051922 18055211 + gene protein_coding_gene FALSE TRUE AT3G48710.1 GTP binding / RNA binding similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G63550.1); similar to Os01g0924900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045251.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71219.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897) 0.240055918437080 1.86762237296896 0.0889631001493023 1 0.905311033776895 9.64446338838592 0.240055918437080 0.164563724936609
AT2G25600_at 1.09265773254127 1.31928205320030 1.11094947904920 1.19755382874182 0.987160779571174 1.01743003509472 1.26547744362834 1.22646501372709 1.48422027087410 1.31007693276153 1.33172728484107 1.21676683707485 1.15625110975074 1.05162557375189 0.984265378447923 0.964605481147595 0.982398289355943 1.46002940765836 1.14614623744662 0.212027981232166 0.212139827586281 0.212027981232166 0.215304144074554 0.213710507358218 0.219363245741014 0.215944910113024 0.220924710858246 0.216961116848975 0.215027301009647 0.218126326911419 0.224958247270509 0.217958596599921 0.218751481773879 0.213822347696493 0.215805659128612 0.212027981232166 0.221123879801622 0.212027981232166 2 2 + 10904696 10905388 10904897.364 10901564 10905447 + gene protein_coding_gene FALSE TRUE AT2G25600.1 SPIK (SHAKER POLLEN INWARD K+ CHANNEL); cyclic nucleotide binding / inward rectifier potassium channel/ potassium channel mutant has Impaired pollen-tube growth; member of Shaker K+ channel family, also Stelar K+ outward rectifying channel (SKOR) family Identical to Potassium channel AKT6 (Shaker pollen inward rectifier K(+) channel) (Potassium channel SPIK) (AKT6) [Arabidopsis Thaliana] (GB:Q8GXE6;GB:Q9SLA3); similar to AKT5 (Arabidopsis K+ transporter 5), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT4G32500.1); similar to AKT1 (ARABIDOPSIS K TRANSPORTER 1), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT2G26650.1); similar to potassium channel [Solanum lycopersicum] (GB:CAA65254.1); similar to potassium channel [Solanum tuberosum] (GB:CAA60016.1); similar to inwardly rectifying potassium channel subunit [Daucus carota] (GB:CAG27094.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) -0.158859753466947 -1.86688231245377 0.0890737949287558 1 0.904275127959685 2.38059195433472 -0.158859753466947 0.0428453060619097
AT1G32610_at 2.12542131185779 2.40547872620757 1.70100435377687 1.98133833397663 2.54963997707889 2.28032267598621 2.36501090771392 2.38816181830987 2.63886436844069 2.33564363451535 2.12820189279916 2.32802399660479 2.41861767865919 2.12244884211040 2.47408333004522 2.09941987783400 2.06160418259668 2.37655587812832 2.26838251814378 0.185579546129284 0.181814417556168 0.183433093390452 0.183819463594316 0.186055468505994 0.180254864479001 0.187927431634426 0.185993649732890 0.182486932446757 0.181203623348783 0.181409254811230 0.182014924451200 0.182315764337107 0.182047482283789 0.180254864479001 0.182854285751458 0.183256283946133 0.187469842387671 0.182032438047054 1 1 - 11795903 11796447 11796193.455 11795589 11797121 - gene protein_coding_gene FALSE TRUE AT1G32610.1|AT1G32610.2 hydroxyproline-rich glycoprotein family protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G35230.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa] (GB:AAL67588.1); similar to Os10g0577200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065489.1) -0.178059618168513 -1.86665896566049 0.0891072269483576 1 0.903962534299647 4.55725541322038 -0.178059618168513 0.0830098088900895
AT3G10220_at 7.29055246914742 7.32129878763724 7.13747362876251 7.1945165494173 7.91272759832853 7.38717121234329 6.76338542247768 6.56767836284966 5.96425076649705 6.3926676609392 6.4476644043165 6.28729341600878 6.1227370507618 6.40865347713145 6.47240319100073 5.93980706547192 5.81603806229123 6.2419774426675 6.43695509826665 0.223571895665281 0.225374330351454 0.221839268936815 0.224054609860958 0.224314192459249 0.237337793829441 0.225798226732953 0.232441297348770 0.263939904606345 0.226209111734452 0.22168015607881 0.225859206127895 0.229891198339985 0.23797106160374 0.22598975223664 0.223382084710349 0.235869892441870 0.232684062802404 0.224513465505535 3 3|0 +|/ 3162221 3163574 3162625.7 3161762 3164236 + gene protein_coding_gene FALSE TRUE AT3G10220.1 tubulin folding cofactor B similar to Os04g0692100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054365.1); similar to tubulin-folding cofactor [Plantago major] (GB:CAJ38389.1); contains InterPro domain CAP-Gly; (InterPro:IPR000938) 0.187345370911756 1.86648488793930 0.0891332920436017 1 0.90371890925661 13.4376986400074 0.187345370911756 0.09769698300847
AT3G06810_at 4.44182175136401 4.45755532135702 4.69003627599127 4.73655686313022 4.86490984676639 4.69801156675023 4.76608159534826 4.28376687981756 3.64734268677241 3.86538382524501 3.90891530303739 3.3045038576536 4.14266840531793 3.73543184175233 3.60572450107555 3.71155890214444 3.99787852063669 3.49403770175214 3.3910368990614 0.174298284043716 0.173193739571173 0.170451352046535 0.173769566750281 0.171813925877653 0.177154724180545 0.170468659987198 0.169106508286851 0.178431798979587 0.171755745255037 0.168979906443577 0.168924333718326 0.171704571701923 0.169906222282658 0.178081227707723 0.174108794683384 0.174743702666719 0.176298586210838 0.171344634311929 3 3|0 +|/ 2147383 2150604 2148862.263 2146341 2150837 + gene protein_coding_gene FALSE TRUE AT3G06810.1 acyl-CoA dehydrogenase-related similar to IVD (ISOVALERYL-COA-DEHYDROGENASE) [Arabidopsis thaliana] (TAIR:AT3G45300.1); similar to Acad10 protein [Mus musculus] (GB:AAH27825.1); similar to PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member 10 [Bos taurus] (GB:XP_588758.2); similar to acyl-Coenzyme A dehydrogenase family, member 10 [Mus musculus] (GB:NP_082313.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type 1; (InterPro:IPR006090); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.181537163333068 1.86643299289090 0.0891410637752391 1 0.903646283225457 8.30343135399772 0.181537163333068 0.0887306853371893
AT2G43860_at 1.79065478143573 2.01708455609557 2.29372297163129 2.27278603812033 1.90522126280758 1.50809157414149 2.30259171905124 2.42635668626229 2.52872692949869 2.15407854978686 1.83254397539965 2.32209964034586 2.23458212301132 2.54271243264536 1.14759709869384 2.02134261556118 2.21054622752626 2.15506971654255 2.13917968878327 0.213807313457620 0.219790046068485 0.211113014734615 0.216347543315581 0.213118586038643 0.210040141263625 0.210876739498875 0.220799451840598 0.208449806542012 0.215716405159276 0.215882703497886 0.213447764022429 0.219813849800904 0.207767547130493 0.207572124922591 0.209801899977950 0.215365819585093 0.208969298732019 0.216494091038366 2 2|0 -|/ 18170041 18170767 18170375.3 18170022 18171505 - gene protein_coding_gene FALSE TRUE AT2G43860.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT2G43870.1); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G59850.1); similar to polygalacturonase [Prunus domestica subsp. insititia] (GB:ABD33834.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.177449900671609 -1.86631554548591 0.0891586548375384 1 0.903481921548997 4.23071709106254 -0.177449900671609 0.0820393290435938
AT1G21950_at 1.31113835827888 0.902553259993836 0.866072196061529 1.11557123274632 1.07457436344988 0.886269999312327 1.39136922610709 0.826809735498284 1.49126649779048 1.36138664166272 1.26702814585823 1.08903764796585 1.18387922214335 1.07523447015226 1.38829905222757 1.0240976389462 1.39107740749210 1.39372155551718 1.73613283602897 0.215708664733741 0.215717411156167 0.214679624768335 0.211027660607404 0.214843544861212 0.214472758511575 0.214503853274442 0.211027660607404 0.220095294306559 0.218417405429953 0.212947797939250 0.212793348589435 0.218935571178457 0.212963451954582 0.217265787860870 0.219926343659741 0.215988266650169 0.215163948990671 0.217841561334275 1 1 - 7723429 7723779 7723576.818 7723428 7723852 - gene protein_coding_gene FALSE TRUE AT1G21950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21940.1) -0.212697064849947 -1.86629731736626 0.0891613852986225 1 0.903456412657113 2.4248659052803 -0.212697064849947 0.132177686733115
AT4G23200_at 5.06363924088291 5.99343650848804 5.05641809778329 5.27372810467933 3.80113151824052 4.0146437329329 2.12103292773936 2.23712405105870 3.86338522803316 3.64969692433539 2.69151764442787 2.55893618130190 2.71181746199183 2.36861177072275 2.70546204268999 2.23820734996893 2.77551457001979 2.32734096154834 3.64719247523609 0.261794973439058 0.266152580289708 0.263046946911968 0.251344174008792 0.249263074132099 0.248435956931659 0.243197921184899 0.249359240273422 0.246755474062518 0.250382763719905 0.250057733115904 0.241785893943642 0.247687491861426 0.248157435995736 0.253175065479116 0.241785893943642 0.250088419617265 0.258371447313029 0.243014948561977 4 4 - 12145429 12146116 12145663.455 12145391 12147945 - gene protein_coding_gene FALSE TRUE AT4G23200.1 protein kinase family protein similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to putative receptor-like protein kinase 4 [Oryza sativa (japonica cultivar-group)] (GB:BAC79722.1); similar to Os07g0628700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060352.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.245121681667095 -1.86611499625285 0.0891887001165867 1 0.903201274317126 7.32877804291003 -0.245121681667095 0.170510331934436
AT3G30290_at 1.19023298690385 0.941922453107248 0.968910125036848 1.45658574809041 1.19978914356475 0.996112034136645 1.41796696007977 1.41655526441259 2.08391351521042 1.90281276826933 1.51264803896087 1.33068525732092 1.33607361796214 1.38050553897249 1.34478660715707 1.46034526887259 2.38465512205624 1.83636993710119 1.61114011985825 0.202453832281315 0.203387907457932 0.208272373871332 0.209352407795959 0.208788817998087 0.213268949459471 0.205952876126832 0.206264568147301 0.213483878442668 0.203726919802008 0.208267832287211 0.2037270223512 0.208385853817311 0.203686196887568 0.202354576302527 0.204535875845488 0.213675942213842 0.210830105774431 0.206408571554929 3 3 - 11919763 11921075 11920218.091 11919709 11922025 - gene protein_coding_gene FALSE TRUE AT3G30290.1 CYP702A8 (cytochrome P450, family 702, subfamily A, polypeptide 8); oxygen binding a member of cytochrome P450 gene family similar to CYP702A2 (cytochrome P450, family 702, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15300.1); similar to putative cytochrome P450-like protein [Sorghum bicolor] (GB:AAL73972.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) -0.189508473823796 -1.86548146915846 0.089283673083928 1 0.902314813905744 2.9181164100814 -0.189508473823796 0.101051476046656
AT2G35010_at 5.91067304250576 6.37898414152927 6.52744919386433 6.689248270325 6.63294632818735 5.92132794659397 6.9215124000081 6.6647086722677 4.42912273010040 5.26665008061833 5.18796412301971 5.31886963500901 5.16522275603869 5.2242394791454 5.70498696133513 5.62022047679022 5.38370806444692 5.02775379708055 4.81647134244709 0.250113370738064 0.242210313362644 0.247368422057819 0.240135592072856 0.240371519189502 0.244961064335572 0.236265050840482 0.233790855821491 0.254052899350127 0.239217417613463 0.236486293951545 0.231414453715222 0.235068757963835 0.241206967653203 0.231925300382307 0.237212278018547 0.239716191758418 0.238950888456357 0.240229653751841 2 2|0 +|/ 14761498 14762940 14761938.556 14761350 14763402 + gene protein_coding_gene FALSE TRUE AT2G35010.1|AT2G35010.2 ATO1 (ARABIDOPSIS THIOREDOXIN O1); thiol-disulfide exchange intermediate|ATO1 (ARABIDOPSIS THIOREDOXIN O1) similar to ATO2 (Arabidopsis thioredoxin o2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G31020.1); similar to putative thioredoxin [Pisum sativum] (GB:CAJ84246.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.232739657275606 1.86521307214413 0.0893239368832186 1 0.90193930305645 11.5391239390753 0.232739657275606 0.156501428337078
AT1G11710_at 1.47389638449153 1.38294491324604 2.28358442302037 2.17320637789242 1.94334683343108 2.08622447935316 2.06620886336157 2.38511228312452 1.63115845467395 1.90566362838159 1.50136651283195 1.86215957446779 2.08184613082542 2.16694137493914 1.42373662633145 2.11850644920010 1.94599621225346 1.96614971339898 1.98763549708701 0.194630177797014 0.187775453287184 0.196551677797109 0.19660670053224 0.191509753876088 0.191244191786371 0.19895057450214 0.194629737280201 0.199413221254843 0.196376018585218 0.187775453287184 0.189487466499798 0.190958669618442 0.192620527234180 0.190312100544032 0.189926435802124 0.188802225631273 0.195558138125827 0.190202947059863 1 1 + 3950266 3950817 3950572.909 3948714 3951359 + gene protein_coding_gene FALSE TRUE AT1G11710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G01110.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85126.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.168200940800933 1.8647997293896 0.089385977464373 1 0.901361050159275 3.83672741190436 0.168200940800933 0.0653424931490855
AT3G13040_at 9.76704875263985 9.92897770047023 10.1634111597798 10.2732726445414 10.5212107751868 10.2394289911580 10.9037597009851 10.7852904828409 10.8836408257265 10.9723947446249 10.7178093225752 10.5396464017711 10.6779622414256 10.7927381851117 10.2885506680398 10.7571054663299 10.6436735060174 10.6469254057424 10.9040726849117 0.0738972907353035 0.068798108526637 0.0745080491005822 0.0680642230735413 0.0689761999534402 0.0707596158910302 0.0693789054884263 0.068823273316619 0.0705255067231688 0.0682405930749853 0.0702572545771033 0.0693203950324404 0.068656478612073 0.0696850594060676 0.0699448454048643 0.0685217483425604 0.0706950958137824 0.0707165980310738 0.0680642230735413 3 0|3 /|- 4172449 4173284 4172637.5 4172149 4175255 - gene protein_coding_gene FALSE TRUE AT3G13040.1|AT3G13040.2 myb family transcription factor similar to PHR1 (PHOSPHATE STARVATION RESPONSE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT4G28610.1); similar to transfactor [Nicotiana tabacum] (GB:BAA75684.1); similar to Os06g0703900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058503.1); similar to Os02g0139000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045841.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.166961476014301 -1.86478867959545 0.089387636523689 1 0.901345592688476 21.0993437683074 -0.166961476014301 0.062808701865527
AT1G35880_at -0.0902361871587003 0.375153344733571 0.190920856928448 -0.190160291675244 0.26301796868465 -0.0213304678949535 -0.154118406873178 0.239927471196374 0.415362830225124 0.117350384237465 -0.0892104712017115 0.244871492052036 0.139436665801378 0.0206260762470746 -0.0656173628244798 -0.0677642106276135 -0.519055598649152 0.512690793514136 0.719610357798303 0.185325066282707 0.192340027382126 0.19784355783184 0.186618933230994 0.182001577503615 0.189622303446936 0.185331160334373 0.190211555140598 0.199198553556109 0.181988967569534 0.183850566301931 0.185641886605365 0.193133890882429 0.191623305600919 0.187526336840866 0.184512255050236 0.198120717890336 0.190873601248218 0.187510351255416 1 1 - 13341244 13341574 13341413.364 13341063 13342440 - gene protein_coding_gene FALSE TRUE AT1G35880.1 similar to TOC75-III (translocon outer membrane complex 75-III), protein translocase [Arabidopsis thaliana] (TAIR:AT3G46740.1); similar to chloroplast import-associated channel protein homolog [Oryza sativa (japonica cultivar-group)] (GB:AAP06869.1); similar to Os03g0271200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049689.1) -0.213756778339232 -1.86412913780195 0.0894867139564192 1 0.90042304287374 0.296365967888915 -0.213756778339232 0.133816855610708
AT4G13640_at 8.97389148836743 8.94779134435022 8.42684368533281 8.32233035367036 9.18125234998033 9.04939280329278 8.15127805925402 8.04208399143037 8.14757330705135 7.96596660959428 8.50729881431956 8.2026317150303 8.21483845078067 8.36847526156005 8.13802419856637 7.88988868764857 8.15423757227163 7.8144904146394 8.08212058071528 0.14998314625347 0.152905065394457 0.158246794605148 0.157294618233307 0.154769845236279 0.163798424631629 0.156829579510247 0.153955156534461 0.166306989635830 0.159018113047182 0.153603232541558 0.14998314625347 0.161750634317728 0.153694279783261 0.151846343900018 0.152418896112712 0.1638707994274 0.165119934557434 0.156852041728045 4 4 - 7936874 7937660 7937183.182 7936588 7938641 - gene protein_coding_gene FALSE TRUE AT4G13640.1|AT4G13640.2 UNE16 (unfertilized embryo sac 16); transcription factor|UNE16 (unfertilized embryo sac 16) similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G24120.1); similar to myb family transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26189.1); similar to Os02g0174000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046045.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G24120.2); similar to myb family transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26189.1); similar to Os02g0174000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046045.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.156104525391830 1.86360709326462 0.0895652078396425 1 0.899692929536564 16.7500859120293 0.156104525391830 0.0350043595835611
AT4G35870_at 5.27663873920753 5.6903290718728 5.82842490461239 5.26605094992809 5.96787764536026 5.97562581516764 5.5682186710394 5.62860266185894 5.3185688716634 4.85779686783604 5.02864056664662 4.97351668804122 5.11121956741518 5.25879200144954 5.15256619075391 5.11280277180828 5.18906695287354 5.25663893464907 4.66211568322729 0.232905062675517 0.225637018586505 0.220901440795267 0.244265729526694 0.226125250915916 0.223847336413677 0.229523934006606 0.232608395800814 0.229015831702755 0.220611432441321 0.221887428939712 0.219473201355466 0.231370553034004 0.227318330068361 0.222555063041574 0.218014753015972 0.229055629232825 0.226884979799128 0.221998895882712 4 4 + 16992192 16992731 16992458.273 16990176 16992891 + gene protein_coding_gene FALSE TRUE AT4G35870.1 similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to Os03g0137400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048901.1); similar to unknown [Sorghum bicolor] (GB:ABE77195.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.203896263867428 1.86342357276928 0.0895928167433961 1 0.899436287028243 10.6910040241043 0.203896263867428 0.121275446131443
AT4G05230_at 2.45427824598164 1.97891466646408 2.78419372167947 2.59845183636417 1.92461251617159 2.53591764882714 1.96704185196684 1.72889483357461 2.25957199165735 2.45610791731531 1.98505080658410 2.18805817353658 2.04559828573598 2.27463714423603 1.50867954824389 2.33691674917985 2.75268282964597 2.2558654500005 1.74434582397356 0.218295603231480 0.212834357231358 0.211434978339283 0.218862215791915 0.222948481954136 0.216567654154328 0.216166411612798 0.21273208781813 0.217909282805942 0.221940118709606 0.212385466323395 0.209904547725299 0.217431651078119 0.218476777042454 0.209904547725299 0.215340647752617 0.216880006928801 0.222398369813681 0.219358815267029 4 4 + 2687024 2687594 2687350.455 2687001 2687621 + gene protein_coding_gene FALSE TRUE AT4G05230.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G03370.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33402.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.221802871838543 1.86316211179055 0.0896321645487992 1 0.899070669946693 4.40742718231741 0.221802871838543 0.143841486332866
AT1G08510_at 9.88667712059746 9.86061089611557 9.62449916432418 9.52436528843699 9.99046187761984 9.9413538452888 9.8877189545411 10.1936226689295 10.4918233183159 10.0270932474602 11.1273095450947 10.6146257551637 11.1090611727208 10.8670225901712 10.5602348610727 10.6919526571452 10.4556409133030 10.6249061215926 10.2056276003318 0.0906568289790176 0.0877195199198345 0.0902988486000422 0.0918269953911093 0.0870833960600679 0.0938242041897525 0.089455417792697 0.0902398579208313 0.09701518141738 0.0897291036036935 0.0874373038102814 0.0865815079377497 0.085634331723498 0.0874324391723073 0.0858924181783386 0.085634331723498 0.0879646560784535 0.087298333525278 0.0882230541469148 1 1|0 -|/ 2691550 2692432 2691872.5 2691083 2694380 - gene protein_coding_gene FALSE TRUE AT1G08510.1 FATB (FATTY ACYL-ACP THIOESTERASES B); acyl carrier/ acyl-ACP thioesterase Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer. similar to ATFATA (ARABIDOPSIS FATA ACYL-ACP THIOESTERASE), acyl carrier/ acyl-ACP thioesterase [Arabidopsis thaliana] (TAIR:AT3G25110.1); similar to palmitoyl-ACP thioesterase [Brassica juncea] (GB:ABI18986.1); similar to palmitoyl-ACP thioesterase [Brassica napus] (GB:ABH11710.1); contains InterPro domain Acyl-ACP thioesterase; (InterPro:IPR002864) 0.163921056934264 1.86313478841204 0.0896362774165796 1 0.899032463368882 20.3625931890162 0.163921056934264 0.0565269019762875
AT4G17785_at 2.13640783981954 1.52996419931089 1.82901798511847 1.87774459201887 1.00558666760188 1.89263736522226 1.18651323741291 1.81218640563168 3.15567980092885 2.72856970991722 2.04690800751614 1.88632124648605 2.37768995939072 2.05716136445403 2.62136517380391 1.91451562452985 2.69992352682794 2.43321299893652 2.55235624892714 0.210092491032556 0.210092491032556 0.214284138596112 0.214091106581116 0.227039871400597 0.215441086498138 0.226847090999689 0.218058665968718 0.212047854772373 0.210092491032556 0.214044226407635 0.218075966822350 0.211231864676541 0.210092491032556 0.212363957697504 0.21130080194914 0.216206345898453 0.217303367422311 0.210092491032556 4 4 - 9882065 9882558 9882291 9881648 9883445 - gene protein_coding_gene FALSE TRUE AT4G17785.1 myb family transcription factor (MYB39) similar to MYB107 (myb domain protein 107), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G02940.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65628.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.286292975117321 -1.86307826208197 0.0896447866261993 1 0.898953422823686 4.19217686535084 -0.286292975117321 0.215345236907010
AT4G33060_at 6.416008541436 6.3646442545439 5.92733033067051 5.84678083005408 6.51518983908273 6.14866028982283 6.14176601980203 6.21794358683685 6.11444606458853 6.0681276437678 6.21127042864011 5.97237871749157 5.74636558082296 5.66562509211258 6.14680084120803 5.67846460268176 6.41340102619973 6.07273599272827 6.26847808028959 0.193140026266108 0.183098277211699 0.194071909619418 0.185558116984484 0.197906789691021 0.186787563279676 0.190357215260122 0.188460243601328 0.202849716000257 0.187972709490286 0.194664443725440 0.190376043871715 0.194594632425007 0.196456375933541 0.196228169162209 0.185190577227740 0.188531295068305 0.184669903065762 0.183098277211699 4 4|0 +|/ 15950248 15951583 15951102.143 15948493 15952226 + gene protein_coding_gene FALSE TRUE AT4G33060.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G44600.1); similar to peptidyl prolyl cis trans isomerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53160.1); similar to Os01g0582400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043413.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.168785294613419 -1.86284699236909 0.0896796086156086 1 0.898630051061391 12.2666559022566 -0.168785294613419 0.0668612643312402
AT4G15820_at 4.10262228541017 4.31312441225794 4.27337769017460 4.46702844460439 4.61611836162922 4.13343971557878 4.58371963032807 4.80514832458531 3.78320586063654 4.10074847597744 3.92834198438921 3.59236040211435 3.46886736505143 3.82510302544798 4.03484107290452 3.97932591985036 3.62456661668580 3.86696684208179 4.39927305363064 0.203531778230323 0.206878251568828 0.200988506218876 0.204351559253628 0.209727092312086 0.208236879154702 0.203745027750919 0.209855424372497 0.21163107370533 0.199423299252733 0.202770735313614 0.199423299252733 0.204388224301749 0.207334470521027 0.201367529395155 0.199423299252733 0.210454717349839 0.204424720911415 0.20328206102476 4 0|4 /|+ 8994175 8995001 8994600.5 8992983 8995201 + gene protein_coding_gene FALSE TRUE AT4G15820.1 wound-responsive protein-related similar to EMB1703 (EMBRYO DEFECTIVE 1703) [Arabidopsis thaliana] (TAIR:AT3G61780.1) -0.191512543332243 -1.86264469520214 0.0897100784303739 1 0.89834720553304 8.35405024989467 -0.191512543332243 0.104382393376625
AT1G32870_at 4.47322710351960 4.60677714577689 5.36886973112848 5.17601224613131 5.1948725039355 5.07236458029061 5.0741523982927 5.1993987266236 4.30814763195575 4.00320626356335 4.11260093510455 3.68072280711913 4.43920348478026 4.12390094502106 3.54145090536136 4.2214585142162 4.40891732619902 4.22371545793945 4.09712266327267 0.20646397960143 0.194085763648400 0.198907422780911 0.194085763648400 0.196936764540255 0.204335152357345 0.211407585244460 0.200764396822775 0.211130011842069 0.196923032542381 0.210460270256041 0.206130073457385 0.205920908169491 0.197695784065627 0.198929227752834 0.195912681182818 0.198827352395091 0.199212005045206 0.195547109426817 1 1|0 +|/ 11912986 11913576 11913241.8 11911659 11913927 + gene protein_coding_gene FALSE TRUE AT1G32870.1 ANAC013 (Arabidopsis NAC domain containing protein 13); transcription factor similar to ANAC016 (Arabidopsis NAC domain containing protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34180.1); similar to nam-like protein 7 [Petunia x hybrida] (GB:AAM34770.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.161239182927657 1.86060879324482 0.0900172538231692 1 0.895501478185297 9.13578687941144 0.161239182927657 0.0506682238408312
AT1G14530_at 2.92122330092373 3.4034044469636 3.57425672235033 3.56239722294162 4.25994053433025 3.45191129723014 4.03731616632238 3.67516082438488 2.72792640728994 3.03755135793891 2.82164961036656 3.29004804813777 3.01952870126328 3.25482867998602 2.93345434327601 3.00862912165998 2.8649603584578 3.34628648902502 2.55831552459255 0.215280778302200 0.220885606690343 0.214735078893814 0.21985754154639 0.213043944864734 0.230327182522613 0.218753232464416 0.214568665560232 0.221116760578423 0.223012238379191 0.213043944864734 0.213043944864734 0.217445721872119 0.226510917329474 0.217623200756430 0.217784082237901 0.226359425908103 0.214353046673765 0.218052190663513 1 1|0 -|/ 4971462 4972876 4972243.667 4970853 4973717 - gene protein_coding_gene FALSE TRUE AT1G14530.1|AT1G14530.2 (TOM THREE HOMOLOG); virion binding similar to TOM3 (tobamovirus multiplication protein 3) [Arabidopsis thaliana] (TAIR:AT2G02180.1); similar to unknown [Brassica rapa] (GB:ABJ15786.1); contains InterPro domain Protein of unknown function DUF1084; (InterPro:IPR009457) 0.247837832656096 1.85975844764456 0.0901458390140861 1 0.894313323683489 6.53171178057854 0.247837832656096 0.174494291765724
AT4G20300_at 4.56023346649282 4.93739002693311 4.5113176296364 4.78032531105953 4.98581927932932 5.08517055166743 4.93670875308772 5.27712181488689 5.25478569372319 5.9222249393734 6.66855930495623 6.34038431050848 6.47886434876218 6.21356951109128 5.7027754414244 6.13995119234491 6.09187639910717 5.33451421858900 5.7921454140529 0.181380388415003 0.187042360730150 0.186232581477083 0.18142172893088 0.187523190285584 0.189962108980810 0.188173550434494 0.185841584665135 0.190068880671935 0.205163417621551 0.194358597529632 0.183291215190041 0.190018242566749 0.187651206756060 0.189451190620819 0.181380388415003 0.197145138904599 0.186090190119748 0.187319623992641 4 4|0 +|/ 10957730 10958851 10957981.556 10955448 10959223 + gene protein_coding_gene FALSE TRUE AT4G20300.1|AT4G20300.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73751.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73751.1); similar to Os01g0680700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043875.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) 0.188860584685580 1.85970705151705 0.0901536162916032 1 0.894241518118062 10.7731094490855 0.188860584685580 0.100961332514408
AT3G44260_at 4.70840431579645 4.69383815785311 4.56483776742014 4.57180894261033 4.19997139787824 4.57723316214086 4.46384820529105 4.54266656667252 5.45361720581064 4.84283586236117 5.54830027058719 5.64453044970435 5.16364325010267 5.53060068002592 5.59446157232856 4.92958563782262 5.50966513882965 5.21405306498804 4.49746390657162 0.204468252452290 0.200478538573079 0.211605475620277 0.219571994761505 0.208386039071832 0.209344092074396 0.206047067107242 0.204416450151189 0.210908122290265 0.208594730157147 0.204771292322621 0.200459186851833 0.202855689009125 0.205381002905365 0.217286949469299 0.202501985966193 0.203785385515816 0.202669306247971 0.203736717896827 3 3 - 15963279 15963755 15963554.091 15963032 15964071 - gene protein_coding_gene FALSE TRUE AT3G44260.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.168411427954961 1.85931161031196 0.0902134751776028 1 0.893689078308937 9.70190639760606 0.168411427954961 0.0667550471274007
AT3G58040_at 5.97547705442645 5.69333010519053 5.80881748292695 6.06938191542683 6.44836275254702 5.7975725622133 6.19140442181955 6.19399931127627 4.89684536280763 5.18833767181626 5.56212110332755 5.6694402712759 5.88866891137265 5.94907812876943 5.02432494572711 6.07964505018165 5.33842965801691 5.0891128958707 5.42786052455439 0.255835136347205 0.256261347784376 0.262715482244909 0.257195656905977 0.254816048954339 0.281123310561922 0.258650765540495 0.257117794166465 0.272052339835766 0.255789366955996 0.254816048954339 0.255992816814775 0.260677175811733 0.257944846339439 0.261054034037634 0.254816048954339 0.268505044243438 0.259799635993259 0.254816048954339 3 3 + 21501044 21501987 21501530 21499493 21502465 + gene protein_coding_gene FALSE TRUE AT3G58040.1 seven in absentia (SINA) family protein Identical to E3 ubiquitin-protein ligase SINAT2 (EC 6.3.2.-) (Seven in absentia homolog 2) (SINAT2) [Arabidopsis Thaliana] (GB:Q9M2P4); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT2G41980.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.210784527970985 1.85926656274492 0.0902202964503714 1 0.893626149419525 11.3953517708753 0.210784527970985 0.130772009499612
AT4G31790_at 4.55804384247353 5.33193256077954 5.27049424739311 5.47148665336479 4.34535306873638 4.12004150941721 4.29627880893578 4.53843477564756 2.63361165163513 3.14031500624181 3.16070637549022 3.72336629369146 3.10603874645838 3.38855376342069 3.3369340551335 3.42266136062124 3.34098467294704 3.27042168374572 3.26177645100672 0.244117023643396 0.237287464828089 0.254768767652373 0.251039753980714 0.241401644054086 0.239032737223565 0.243025965617811 0.242329690245756 0.252897735518155 0.242448866340553 0.254652578551811 0.239808556404242 0.237287464828089 0.252728905371841 0.243272718470135 0.238646230535981 0.246133628839551 0.252061566242727 0.242548277637921 4 4|0 +|/ 15377807 15378466 15378228.8 15377217 15379031 + gene protein_coding_gene FALSE TRUE AT4G31790.1|AT4G31790.2 diphthine synthase, putative (DPH5) Identical to Probable diphthine synthase (EC 2.1.1.98) (Diphthamide biosynthesis methyltransferase) [Arabidopsis Thaliana] (GB:O81769); similar to novel protein similar to human and mouse CGI-30 protein (CGI-30) [Danio rerio] (GB:CAK04874.1); similar to Os03g0355800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050137.1); contains InterPro domain Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; (InterPro:IPR000878); contains InterPro domain Diphthine synthase; (InterPro:IPR004551) 0.226239352706370 1.85912985601102 0.0902409999989809 1 0.893435182299984 7.91931288596003 0.226239352706370 0.149740442319858
AT4G24650_at 1.46101531344947 1.12372620283227 1.23283058206058 0.79809428407096 1.21399879587026 1.06321923090129 1.58421569502073 1.66318993289820 1.62589969155802 1.26229669595287 1.63504044764946 1.28841938676652 1.80020208056786 1.82208891487423 1.01246736741634 1.42342235048728 1.42126876070925 1.29069465438234 1.48103889337918 0.208317583610328 0.215526690954593 0.217338247587484 0.214429607626978 0.218509263474366 0.211302172476235 0.214731573922262 0.208905819604144 0.218597399229789 0.210184157193657 0.206851043382719 0.223035742585978 0.217451916147905 0.217392275472036 0.217683867970153 0.217684173618859 0.212524558021196 0.211000638866183 0.212329898149016 4 4 + 12720833 12721365 12721042.909 12720404 12721453 + gene protein_coding_gene FALSE TRUE AT4G24650.1 ATIPT4 (Arabidopsis thaliana isopentenyltransferase 4) AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds similar to ATIPT1 (ISOPENTENYLTRANSFERASE 1), adenylate dimethylallyltransferase [Arabidopsis thaliana] (TAIR:AT1G68460.1); similar to isopentenyltransferase [Brassica rapa subsp. pekinensis] (GB:BAE43826.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) -0.187856163882212 -1.85839936647583 0.0903517028994568 1 0.89241486610943 2.72659238246465 -0.187856163882212 0.0996727262367506
AT1G23910_at 1.28338554278788 1.11613939637091 1.20254668760836 1.25041582685958 1.01315647616654 0.969950163305774 1.26681140601736 1.41299535763959 1.55226128739823 1.20503713176607 1.20054370059490 1.36763989282817 1.36514093648738 1.25850745387816 1.03053236826354 0.844647891692276 1.45864295390381 1.17864775281280 1.34237231693014 0.161643917313993 0.171866965711458 0.167215045760551 0.163040040321304 0.161237350639735 0.160759177787276 0.170101569134229 0.169386059355959 0.167709101469138 0.164038770077239 0.161533868144487 0.161774111724007 0.163611717788845 0.166567862086455 0.161399007481775 0.160219530845983 0.160306353354968 0.171065176366928 0.161162765564651 1 1 - 8451059 8451254 8451157.545 8451057 8451278 - gene protein_coding_gene FALSE TRUE AT1G23910.1 similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G24000.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.15716734022136 -1.85804063919915 0.0904061122710005 1 0.891913880828845 2.47922249751405 -0.15716734022136 0.0400273833163536
AT2G04940_at 5.66189506349654 5.88033333940712 5.70907787349602 5.75915310977107 6.06102357494701 6.15348040892983 5.41372277434312 5.22112505832726 5.14389464312168 4.86141454491364 5.29419514459832 4.88841376999302 5.25648538448949 5.13900544510813 4.98557351564647 4.98531535577561 4.93852129391764 5.04107983180274 5.34892546818425 0.183845834670029 0.18537946021111 0.184767709134055 0.192734068578467 0.187897209839668 0.195729083506086 0.192100630293410 0.186891898759776 0.190848972087355 0.193669646472544 0.183845834670029 0.191439852878039 0.187475306085643 0.190138045482724 0.189713715291709 0.183992514185998 0.194615336004585 0.194282822668897 0.192474058614426 2 0|2 /|- 1736674 1738014 1737184.857 1736482 1740385 - gene protein_coding_gene FALSE TRUE AT2G04940.1 scramblase-related similar to scramblase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29081.1); similar to Os04g0599400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053750.1); similar to Os02g0238500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046399.1); contains InterPro domain Scramblase; (InterPro:IPR005552) 0.162205090909524 1.85799570514047 0.0904129296895156 1 0.8918511308063 10.8245523685429 0.162205090909524 0.0535813000458462
AT4G18790_at 1.32132619831734 1.52864064274426 1.34767282429469 1.45772221823442 1.52170913468546 1.09838663715631 1.84563623868623 1.39332980085254 1.63250908941502 1.74732552535427 1.49695782622316 1.59303506675581 1.51591283499199 1.52850034247996 1.40248561260547 1.35749419937154 1.54718000190956 1.68035731523207 1.85734633228675 0.224716300587701 0.228099031832097 0.227008508271671 0.222603169641081 0.227589766890277 0.229641908938656 0.226473676960738 0.230074401640983 0.235195116795912 0.225362505150963 0.222635274586771 0.224582478101368 0.227240145020690 0.224791987676904 0.230064116131097 0.225122117820791 0.232832633581028 0.235261637914451 0.227925439230790 4 4 - 10317833 10318419 10318126.727 10317796 10319671 - gene protein_coding_gene FALSE TRUE AT4G18790.1 NRAMP5 (NRAMP metal ion transporter 5); metal ion transporter member of Nramp2 family Identical to Metal transporter Nramp5 (AtNramp5) (NRAMP5) [Arabidopsis Thaliana] (GB:Q9SN36); similar to NRAMP2 (NRAMP metal ion transporter 2), metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G47240.1); similar to NRAMP3 (NRAMP metal ion transporter 3), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT2G23150.1); similar to ATNRAMP4 (Arabidopsis natural resistance-associated macrophage (NRAMP) protein 4), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT5G67330.1); similar to ferrous ion membrane transport protein DMT1 [Glycine max] (GB:AAO39834.1); similar to metal transporter [Lycopersicon esculentum] (GB:AAP21819.1); similar to Nramp metal transporter-like protein [Thlaspi caerulescens] (GB:AAW47269.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) -0.198173549481596 -1.85625227937263 0.0906778076924763 1 0.889417006909168 3.06978665302051 -0.198173549481596 0.114644397938784
AT4G35540_at 3.9962242003698 4.16227178686737 4.13077195200378 3.79079338899132 3.76285028629942 3.95165636222695 4.11261829671519 4.64907260959682 3.67618994700471 4.11872982926237 3.96551769426812 4.3490812679298 3.85930177930604 4.27438739183774 3.55696560394470 4.00924870538759 3.94945650704859 4.00254593917145 4.43406792085591 0.238702858774549 0.239529558113335 0.240812468163582 0.243861114937114 0.235287461830911 0.247321264411 0.237007620380816 0.237366610215640 0.242793840412289 0.240973216711585 0.237124343653194 0.238955705836147 0.23458967948157 0.244987359984155 0.236479068506999 0.233174055145827 0.236016636238517 0.234784744053773 0.236238820156434 4 4 + 16874937 16875495 16875228.364 16873840 16875603 + gene protein_coding_gene FALSE TRUE AT4G35540.1 zinc ion binding similar to hypothetical protein MtrDRAFT_AC147501g16v1 [Medicago truncatula] (GB:ABE90047.1); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Zinc finger, TFIIB-type; (InterPro:IPR013137); contains InterPro domain Cyclin-related; (InterPro:IPR013763) -0.200772423634753 -1.85591792287508 0.0907286876464437 1 0.888950311191185 8.10560353212687 -0.200772423634753 0.118208900612593
AT1G22830_at 2.22912685819221 1.83015285050891 2.54951012324282 2.45417503897947 2.45692235537638 2.53410283380824 2.46765345676093 2.07818394697222 1.50080664505064 1.69582699374408 1.87357764497326 1.75892999188141 1.92845992104592 1.5883637203539 1.1765480748722 1.74531217201514 2.03586675591288 1.68859408977108 1.89690750761448 0.192523843151137 0.187383706597975 0.191783284900940 0.189902123010226 0.193000444952005 0.194205120081152 0.194895968496036 0.197703407409839 0.202498091810802 0.191538716434552 0.195293853671029 0.191330249597116 0.192612247771355 0.187383706597975 0.190622898068952 0.187383706597975 0.188859086092925 0.193697617985467 0.187383706597975 1 1 + 8077733 8078250 8078077.636 8076562 8079105 + gene protein_coding_gene FALSE TRUE AT1G22830.1|AT1G22830.2 pentatricopeptide (PPR) repeat-containing protein|binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G71490.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57760.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.187003903646656 1.85579440881742 0.0907474897469355 1 0.888777920015338 4.03613023055829 0.187003903646656 0.098794717823999
AT2G19280_at 2.75984803825344 3.17702108285027 3.12958149948721 3.21925893651246 3.01455820235698 2.95200171819348 3.39369641251961 3.14729983554922 3.40869004080318 3.28788283942500 3.03652748212520 3.06017720279937 3.32412868499536 2.80976510634819 3.03315328239015 3.16715005793184 3.2212682296921 2.89160216412166 3.45821383466622 0.210544319164724 0.203973260949053 0.207861114550952 0.207572310254148 0.212211438465108 0.212415586154944 0.205099859184137 0.203973260949053 0.212200064204487 0.203973260949053 0.209606479230859 0.207047347754825 0.207853678288629 0.203973260949053 0.203973260949053 0.206636698599400 0.217790825264197 0.203973260949053 0.207032004396847 2 2 + 8371265 8371806 8371512.909 8369517 8373226 + gene protein_coding_gene FALSE TRUE AT2G19280.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G01110.1); similar to Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAM15782.1); similar to Os03g0165100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049065.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.178786815909959 -1.85572511169598 0.0907580401637576 1 0.888681202944307 6.32560843134798 -0.178786815909959 0.0859543506977555
AT2G31180_at 2.57042657073830 3.10948224982227 3.39773067982746 2.99339448806319 1.86207727957423 2.32684966480863 2.47373484669491 3.10391297462247 3.11859668942580 3.23097572356661 2.68787414920319 2.89825349302388 2.83884287703274 3.33665636622149 2.86632605940846 3.00667601817997 2.84595489302457 2.97362522544355 3.44371401058831 0.211250972036661 0.217353130479194 0.213153736458929 0.215914563625998 0.227724538446104 0.222136440098105 0.216577821630068 0.211250972036661 0.215091321687703 0.233420891643542 0.220703334434035 0.220488736655779 0.214950843833818 0.220320389992135 0.227416802199118 0.221542068690125 0.211250972036661 0.211250972036661 0.244217008803929 2 2 - 13293928 13294971 13294303.273 13293798 13295253 - gene protein_coding_gene FALSE TRUE AT2G31180.1 AtMYB14/Myb14at (myb domain protein 14); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to ATMYB13 (myb domain protein 13), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G06180.1); similar to MYB23 [Malus x domestica] (GB:AAZ20439.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.251014402534558 -1.85478658533382 0.0909010407265738 1 0.887371482969638 5.82780356579517 -0.251014402534558 0.178775320011452
AT3G16680_at 1.26054640804893 0.885314597941733 1.02916519493358 1.29876293093156 0.965287297521665 1.37235018103782 1.19568185386459 0.979466017433705 1.82168970221218 1.75637567647029 1.05905598440096 1.11863163714513 1.14217396661630 1.21045156214991 1.51203869232302 1.23347049686243 1.13158912609884 1.37496381949630 1.52923791256001 0.174461952663023 0.172280842423119 0.176352342945115 0.175291723422058 0.173126456207786 0.18803016338268 0.183115595290566 0.172280842423119 0.173228720905914 0.178746598874127 0.184082471327958 0.174492521335167 0.182915814017415 0.176819099828889 0.182004484776759 0.175024161038911 0.177511927364453 0.174609322261662 0.177963972792841 3 3|0 +|/ 5683712 5683975 5683810.5 5683342 5684251 + gene protein_coding_gene FALSE TRUE AT3G16680.1 DNA binding / DNA-directed RNA polymerase similar to ATRPABC24.3 ("Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit"), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G22320.1); similar to Os04g0487300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053145.1); similar to OJ991113_30.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD41325.2); similar to Os01g0805800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044564.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain RNA polymerase Rpb5, N-terminal; (InterPro:IPR005571) -0.196749168996815 -1.85453830407351 0.0909389051855763 1 0.887025057377357 2.58593748073958 -0.196749168996815 0.112941382874163
AT2G17580_at 2.75315471640586 2.26469264759831 2.30084101092034 2.49180078203846 2.20258186948262 2.70920818988501 2.24848087931969 2.17446261337211 2.30515076426296 1.56236265484436 2.13900175832016 2.33610546355943 2.5306469233319 2.27492559632927 2.08909424876569 2.03324171647648 2.25302338089948 2.08360313651545 1.73972349048172 0.226968136893046 0.232361229879534 0.243662226315643 0.233484456885879 0.229743043916214 0.234179794773621 0.229362303337381 0.235688225408001 0.239080253768218 0.226476918045448 0.231768293850890 0.225950777780868 0.237176393810484 0.229969244456207 0.22803531982803 0.227200883511983 0.229167883771308 0.229704963059411 0.231766310849234 2 0|2 /|+ 7654344 7656508 7654860 7653545 7657402 + gene protein_coding_gene FALSE TRUE AT2G17580.1 polynucleotide adenylyltransferase family protein similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G28090.3); similar to Os03g0131400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048863.1); similar to Putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:AAM22707.1); contains InterPro domain Nucleotidyltransferase/Poly(A) polymerase; (InterPro:IPR012277); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646) 0.207143278534666 1.85420725075976 0.0909894154122132 1 0.886563174619114 4.43641996257167 0.207143278534666 0.126839714195028
AT1G24030_at 0.945608099304533 1.03746059978970 1.08922471883244 1.02693650133172 1.52087387369561 1.17913772398904 1.37418507323294 1.03494821396455 1.19392265906895 1.15436924461233 1.36402609229593 1.34738195231613 1.45573440793767 1.34536657430095 1.65490422765848 1.36189488060941 1.85911008686061 1.75854861088075 1.45465228308020 0.189361881559422 0.184123779778847 0.187670936343622 0.184008239160704 0.180323209713560 0.183839108152713 0.185901938610745 0.182193051662188 0.189327933383585 0.183186286743877 0.181134241710436 0.181543159240284 0.196434192701204 0.189023299905360 0.179987447083792 0.180814335471648 0.182797233914675 0.183455619583876 0.185098735644905 1 1 + 8504220 8505150 8504663.455 8503223 8505449 + gene protein_coding_gene FALSE TRUE AT1G24030.1|AT1G24030.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20530.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20530.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83211.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.178357749871469 1.85404227153777 0.0910145966076003 1 0.886333011640705 2.54405630869823 0.178357749871469 0.0855145636011913
AT3G46790_at 4.76183792418006 5.19489977979056 5.20844450845292 5.2569923888212 5.14521003291013 4.51866599289626 5.05584437554235 5.05167395399069 3.85933580253618 5.40147677807575 4.51819172466029 4.58154887017525 4.50937661193765 4.30465159098372 4.32848448540591 4.84880194036256 3.78025263867189 4.36970827642674 5.27067315649068 0.24590207914751 0.250983017932174 0.250381209845061 0.251440139537979 0.242685270698939 0.264387296730624 0.243691159312368 0.245212110447756 0.253428086953071 0.244698880902544 0.247099384713847 0.243712381376744 0.244701250753586 0.252457463243196 0.247361097867315 0.243372687499619 0.269263240222531 0.261546255258992 0.254667152865729 3 3 - 17242995 17243502 17243272.545 17242758 17244987 - gene protein_coding_gene FALSE TRUE AT3G46790.1 CRR2 (CHLORORESPIRATORY REDUCTION 2); binding Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to Os01g0848300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044803.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD33343.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.211218669655999 -1.85403505442069 0.0910156983203271 1 0.88632294324243 9.64867391775412 -0.211218669655999 0.132075325538746
AT4G27170_at 2.04989933023999 1.8255093353277 2.06848124807879 1.94711533883014 1.70392553540452 1.80262242415240 1.73537746332438 1.77945407200090 1.64026954408330 1.74276678781717 2.35667081704094 1.79190112177627 1.59961677170328 2.28287708900596 1.94635519768603 1.72892488038711 1.8870835027144 2.24251912647942 1.69679014254174 0.205084801130438 0.206435211276286 0.208699994275662 0.214278607494452 0.210669235125564 0.202614845842678 0.212166154917857 0.203622666952068 0.217327656343468 0.213011080548357 0.211240846507507 0.215767603113715 0.206818426887506 0.213096013469345 0.207514703734407 0.206615261255013 0.216345709382429 0.211282583752198 0.218195070622400 4 4 + 13613711 13614021 13613858.909 13613602 13614289 + gene protein_coding_gene FALSE TRUE AT4G27170.1 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 Identical to 2S seed storage protein 4 precursor (2S albumin storage protein) (NWMU2-2S albumin 4) [Contains: 2S seed storage protein 4 small subunit; 2S seed storage protein 4 large subunit] (AT2S4) [Arabidopsis Thaliana] (GB:P15460); similar to 2S seed storage protein 2 / 2S albumin storage protein / NWMU2-2S albumin 2 [Arabidopsis thaliana] (TAIR:AT4G27150.1); similar to Napin-B precursor (1.7S seed storage protein) [Contains: Napin-B small chain; Napin-B large chain] (GB:P27740); contains InterPro domain Napin/ Bra allergen; (InterPro:IPR000617); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.159597079130831 1.85387551813247 0.09104005509656 1 0.886100383382261 3.70043262083481 0.159597079130831 0.0479471914310525
AT3G24260_at 1.42631260428585 1.40594022945549 1.50060538308954 1.20192775579806 1.33863482382856 1.34917469784201 1.03601833231578 1.49666735763346 1.47400615611691 1.27208082135347 1.99338694110342 1.66931198487523 1.79368132171327 1.47451265469726 2.31045448041220 1.51215211847655 1.51527262440534 1.75179706638813 1.42452357463747 0.180918497555348 0.178490381442344 0.181602678588261 0.181066615039528 0.182938995569985 0.183919318887658 0.188650695233760 0.17977945383249 0.184147070245340 0.181107129582726 0.180843851806871 0.183053404845056 0.181430782228672 0.178490381442344 0.201434206303479 0.187217245265377 0.183218743575729 0.183763170990544 0.178490381442344 3 3 - 8793867 8794374 8794170.364 8793844 8794968 - gene protein_coding_gene FALSE TRUE AT3G24260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28870.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE90181.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194) 0.184359332928271 1.85380803015798 0.0910503604419907 1 0.886006237546632 2.9157974812202 0.184359332928271 0.0950906595916797
AT3G16640_at 12.4588290626775 12.8648521166876 12.2865791038192 12.5264841082638 12.7113344952734 12.5744903846324 12.2308311714805 12.7814856838561 12.9689044102897 12.7921052315476 12.8103482808575 12.6206762416561 13.0231302254978 12.7456302777099 12.2379448766756 12.6279910797903 12.0453295742349 12.57896771305 13.0661682428361 0.0965192007123185 0.09809050806398 0.101288729902506 0.0965192007123185 0.0965192007123185 0.102011336843257 0.0970726336217314 0.0973067929319237 0.100817371804781 0.0965192007123185 0.0984524304349668 0.0975878938585538 0.0965192007123185 0.100047981169578 0.100322948440235 0.097285010620279 0.108847729883894 0.099697679228568 0.0965192007123185 3 0|3 /|- 5669740 5670353 5670072.111 5669379 5670848 - gene protein_coding_gene FALSE TRUE AT3G16640.1 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes a protein homologous to TRANSCRIPTIONALLY CONTROLLED TUMOR PROTEIN (TCTP). Identical to Translationally-controlled tumor protein homolog (TCTP) (TCTP) [Arabidopsis Thaliana] (GB:P31265;GB:Q8L973;GB:Q9LUS0); similar to translationally controlled tumor family protein [Arabidopsis thaliana] (TAIR:AT3G05540.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q944W6); contains InterPro domain Translationally controlled tumor protein; (InterPro:IPR001983); contains InterPro domain Mss4-like; (InterPro:IPR011057) -0.207708915109350 -1.85343787297667 0.091106902099176 1 0.88548989663775 25.3186832217906 -0.207708915109350 0.127680551214725
AT4G31940_at 1.92146990471778 1.54896837049669 1.69633379944445 1.96710234144961 1.47671647362948 1.72191031665462 1.17671148811009 1.43246675061828 1.53369043560949 1.77277519028353 1.81454059307260 1.73530261166834 1.59994694019799 1.77078964480871 1.96175638979124 1.56158976654558 1.71807725996918 2.06568496319285 1.48814512790504 0.160416360064669 0.158242976369145 0.159757309305640 0.156221476521642 0.157357258351987 0.161660597306213 0.157739420091752 0.155724823462083 0.155748626309584 0.164413048474040 0.163397689753118 0.157059849776035 0.163625531670546 0.161248771759285 0.158710126543211 0.161080217867395 0.162476305744937 0.155724823462083 0.161492067381083 4 4 + 15453496 15453948 15453718.273 15451994 15454166 + gene protein_coding_gene FALSE TRUE AT4G31940.1 CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31970.1); similar to CYP82C1p [Glycine max] (GB:AAB94590.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.187934520432645 1.85332044900022 0.0911248453856826 1 0.885326109427508 3.30604223351771 0.187934520432645 0.100551129327757
AT3G18520_at 5.03589361369151 4.5738980150406 4.63914281794493 4.48736020317245 5.3940679544763 4.86397472889363 4.68771909434215 4.66218556668048 5.51409232662684 4.8926506049435 4.87176745448756 4.64088525501391 4.36910946770502 5.12869702847712 4.37286491738826 5.21466699000596 4.95874145663982 4.29906005144523 5.3394674683108 0.207041808319145 0.208212604591117 0.216533570860529 0.214443236500754 0.210490031533702 0.215950333531198 0.217605987035249 0.212112908781985 0.221156098436470 0.216123523976188 0.207824405278275 0.207041808319145 0.209086303576086 0.216162558417089 0.214717172936901 0.210944411083600 0.219086085441938 0.215608273071885 0.217546142166051 3 3|0 +|/ 6364364 6365337 6364902.222 6361182 6365621 + gene protein_coding_gene FALSE TRUE AT3G18520.1|AT3G18520.2 HDA15 (histone deacetylase 15); histone deacetylase Encodes a protein with similarity to histone deacetylases. similar to HDA05 (HISTONE DEACETYLASE5), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61060.1); similar to histone deacetylase HDA110 isoform 2 [Zea mays] (GB:AAM93213.1); similar to histone deacetylase HDA110 isoform 1 [Zea mays] (GB:AAM93212.1); similar to Os07g0164100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058957.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286)|similar to HDA05 (HISTONE DEACETYLASE5), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61060.1); similar to putative histone deacetylase [Oryza sativa (japonica cultivar-group)] (GB:BAC79741.1); similar to Os07g0164100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058957.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286) -0.205275184315938 -1.85314741132834 0.0911512927796964 1 0.885084759215256 9.78338568808313 -0.205275184315938 0.124566747793852
AT1G25370_at 4.17456432492137 3.8248463503991 4.01040514797536 3.95871374451588 4.06368204751233 3.75441218213779 3.26060531764031 3.37165799994803 3.19527855606014 3.28825836650968 3.24273747172631 2.95427576438309 2.90605847773099 3.10951656526141 3.65378446270086 3.38792946549021 3.47225746888854 3.22221946203105 3.05176063698359 0.212187723056612 0.217719631913922 0.218960819057002 0.218462032571903 0.215186368983151 0.211716297008315 0.20922230179601 0.208455594708025 0.210252096541311 0.210526349558956 0.215122863515505 0.208455594708025 0.217190409637318 0.213778064953309 0.223477085241483 0.208455594708025 0.211952433336944 0.209608683910143 0.210566106281868 1 1|0 -|/ 8898239 8898680 8898481 8897744 8899089 - gene protein_coding_gene FALSE TRUE AT1G25370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68340.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79894.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) 0.177024827366778 1.85259925946737 0.0912351197908775 1 0.884320276407154 7.01337584544512 0.177024827366778 0.0835255843395806
AT1G35140_at 1.43308392403901 1.35560721394073 1.46308875666590 1.29892315406874 1.31539265740142 1.43840179253918 1.43752232036568 1.17925742407733 2.17419787177430 1.73677641454751 2.29718318332683 1.07004464498580 1.6515692352975 1.47083363196599 1.33758041042636 1.19562675660237 1.29313908201631 1.29291717458308 1.50857990943629 0.182904226891863 0.19092400310558 0.184127752913363 0.18740891304567 0.188409518517541 0.183449841201735 0.187531689848364 0.184654121579866 0.18805388348157 0.184379947528185 0.186541930186503 0.191323259893708 0.196146098039558 0.187782329360783 0.190422213205822 0.182904226891863 0.190035037223383 0.192231842788438 0.185368498726608 1 1 + 12852487 12852971 12852696.727 12851975 12853103 + gene protein_coding_gene FALSE TRUE AT1G35140.1 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds similar to phosphate-responsive protein, putative (EXO) [Arabidopsis thaliana] (TAIR:AT4G08950.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; (InterPro:IPR006766) -0.163911215394526 -1.8523965819572 0.091266132476075 1 0.884037638422147 2.99397457046387 -0.163911215394526 0.0586308050865663
AT1G08610_at 1.94531044023709 2.31925626445676 2.50316646355254 2.42417077774533 2.38983480585238 2.38478020020889 2.13693403538004 2.11975555450971 1.93133289206167 1.61054611208739 1.95679898952787 2.30691872219332 2.23819737143959 1.96785335698916 1.87775462135323 1.91037812039642 2.05220253573940 2.26637837357013 2.55492022955687 0.169598964076241 0.168659657757998 0.168659657757998 0.172280718126788 0.176644237177293 0.182179948579637 0.170919882630942 0.170054218530619 0.175423626037348 0.172954705960415 0.171831954757213 0.171991703232731 0.171753725874439 0.174362512140296 0.180361197722999 0.181114744779423 0.179058980053252 0.181445591900416 0.171557712607559 1 1 - 2733828 2734365 2734152.636 2733791 2735470 - gene protein_coding_gene FALSE TRUE AT1G08610.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to Os10g0476900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064852.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15828.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.167483919179860 1.85206019255808 0.0913176264148657 1 0.883568568919587 4.33006440406107 0.167483919179860 0.0662138097164738
AT1G30510_at 5.58071514240606 5.51084128925148 5.7181833112027 5.9894174415442 5.50588203004582 5.1557048136873 6.49738870239453 6.62570092592138 4.77587567106215 5.28567231823517 6.38815661990525 6.40939511590035 6.01080117917028 6.4804842022829 5.60533775538780 5.76616282789233 5.9686669389187 6.4966681881978 5.92502688428158 0.198736898581132 0.190900876764284 0.193367623037005 0.198868018159418 0.196986045474332 0.194038713515179 0.206373963328282 0.189467998528523 0.219825454098383 0.195338326257472 0.189467998528523 0.192913035634537 0.197942164618580 0.199837942494686 0.196716902506955 0.197446380697813 0.197235220475809 0.199317783923897 0.191348866802040 1 1 - 10807133 10807761 10807430.636 10806967 10809170 - gene protein_coding_gene FALSE TRUE AT1G30510.1|AT1G30510.2|AT1G30510.3 ATRFNR2 (ROOT FNR 2); oxidoreductase Encodes a root-type ferredoxin:NADP(H) oxidoreductase. similar to ATRFNR1 (ROOT FNR 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05390.1); similar to ferredoxin-NADP reductase (EC 1.18.1.2) - garden pea (fragment) (GB:T06773); similar to Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (FNR) (GB:Q41014); contains InterPro domain Ferredoxin--NADP reductase; (InterPro:IPR012146); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.175243098195300 1.85123959100070 0.0914433545430278 1 0.882424472441341 11.5577629043816 0.175243098195300 0.0807144499171995
AT2G06230_at 2.36696275091255 2.02916897055419 2.38282168304201 1.91934299965762 1.90873893339217 2.37508077561075 2.29659642293948 2.21259584950952 2.93056604904843 2.35662226018235 2.27483115728308 2.28074557198924 2.41054833365692 2.3990781408365 2.4729332589015 2.19475691850245 2.63363742980904 2.54732307908756 2.92822696433594 0.202193580212889 0.206919856990174 0.202193580212889 0.203312616114533 0.206458197006727 0.205070933663591 0.207826814855026 0.202193580212889 0.218187830671814 0.208132420207938 0.213625245634600 0.202193580212889 0.206135352912176 0.209507136355085 0.206465468045753 0.202340942899732 0.202193580212889 0.206593917863436 0.202245294240283 2 2 - 2440454 2440701 2440562.364 2440434 2440730 - gene protein_coding_gene FALSE TRUE AT2G06230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33230.1) -0.208287461075290 -1.85123776197129 0.0914436349542068 1 0.882421922647518 4.75651529525922 -0.208287461075290 0.128742427858039
AT2G15260_at 0.698433169255478 0.807346359031642 0.924625564844653 0.940304611829987 0.463823935395987 0.623447828909332 0.509211363027065 0.48899617838634 1.17251156171509 0.81367207341582 0.439672478130099 0.369090091868086 0.266431298446684 0.400054845931441 0.383374319077413 0.564006347492069 0.209214727008804 0.796657892889164 0.56391064310921 0.219370481650567 0.221122920206869 0.222222530987437 0.221884493233433 0.219370481650567 0.221738630223672 0.220081707282748 0.219370481650567 0.224509875063941 0.221902901683429 0.22447632184944 0.219370481650567 0.221272620731688 0.228182282784547 0.220002220013571 0.219370481650567 0.224259242849745 0.223117915777079 0.233150314895833 2 2|0 +|/ 6638586 6641062 6639521.444 6637610 6641090 + gene protein_coding_gene FALSE TRUE AT2G15260.1 zinc finger (C3HC4-type RING finger) family protein similar to transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G05545.1); similar to VIP2 protein [Avena fatua] (GB:CAB75506.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.154707479077356 -1.85117172295762 0.091453760020306 1 0.882329860487225 1.32132071442782 -0.154707479077356 0.0337329470675115
AT1G76520_at 10.7528666981947 10.8071652850891 10.8840244019673 11.0038927531979 11.0650367096856 10.7351210714819 9.93411860682353 9.88444144865066 10.4692934520446 9.98092396625702 9.5713547590309 9.56974238839678 10.2084175982106 10.1606157734248 9.31227133027181 10.3001255288408 9.88785949082078 9.76026298073148 9.82897058560504 0.0775273435312056 0.076556701213754 0.0820723302175311 0.0785180345846545 0.0783664916048591 0.0832816676928648 0.0807584449535383 0.0808377111865248 0.0817166266133988 0.0793160439393199 0.0767724560314871 0.0763192783247145 0.0763192783247145 0.0789922557762964 0.0877869077552165 0.0763192783247145 0.0892142376623176 0.0808817397955007 0.0778725545405798 1 1 + 28721389 28722120 28721763.636 28719972 28722310 + gene protein_coding_gene FALSE TRUE AT1G76520.1|AT1G76520.2 auxin efflux carrier family protein similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT1G76530.1); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE88820.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.165319643820391 1.85039107811224 0.0915735259835347 1 0.88124171553826 20.6030303214788 0.165319643820391 0.0620658341925203
AT4G34710_at 7.11496844435768 8.30237633666392 7.86106855198873 8.38881128755122 5.93854170043938 5.66864470974465 8.58240758854074 8.58014699992208 5.36231096401283 6.59315138816153 5.42493785047078 7.36899835385414 6.60399792681456 6.61984472345488 6.93208202628105 7.7185261933314 7.10938606168636 5.702930554177 6.34609623998274 0.202248870740952 0.202120451276121 0.205312237593175 0.206490317940879 0.198894963938989 0.209142147764659 0.205381832927101 0.199926861272657 0.206428685067914 0.207862207031827 0.202843049426751 0.199836570368276 0.205802325390322 0.203712203645603 0.200497045861958 0.199460227204185 0.205766162267411 0.203873736657243 0.210377088938831 4 4 - 16560322 16560894 16560535.818 16560067 16562974 - gene protein_coding_gene FALSE TRUE AT4G34710.1|AT4G34710.2 ADC2 (ARGININE DECARBOXYLASE 2) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1. Identical to Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) (SPE2) [Arabidopsis Thaliana] (GB:O23141); similar to ADC1 (ARGININE DECARBOXYLASE 1) [Arabidopsis thaliana] (TAIR:AT2G16500.1); similar to ar (GB:AAR08423.1); similar to ar (GB:AAF26434.1); similar to ar (GB:AAF26435.1); contains InterPro domain Orn/DAP/Arg decarboxylase 2; (InterPro:IPR000183); contains InterPro domain Arginine decarboxylase; (InterPro:IPR002985) -0.298069924700183 -1.85010107181877 0.0916180551568237 1 0.880837529979103 13.9474244483900 -0.298069924700183 0.229667689197898
AT4G21940_at 4.26440870675046 4.08409530440002 4.25058838770353 4.4459703830072 4.19232409702677 3.53575968341568 5.0132476493968 4.87523310079497 3.81255536961853 4.0207685669597 4.17379257350187 4.07572642602994 3.67440298701490 4.35072022732411 3.69786200386253 3.98425730307613 3.60144790122544 3.94107556880065 3.85065352980744 0.193873758301033 0.196193472960134 0.196008471095144 0.203692242340649 0.198213128715581 0.197464122833466 0.206699424553106 0.201169531470095 0.194126498961910 0.198713255743358 0.195941052753071 0.194954426368083 0.196481302679221 0.193873758301033 0.193873758301033 0.1944591159764 0.201251770723788 0.208008209750712 0.197738650513582 4 4|0 +|/ 11642484 11643375 11642929.375 11640819 11643653 + gene protein_coding_gene FALSE TRUE AT4G21940.1 CPK15 (calcium-dependent protein kinase 15); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK23 (calcium-dependent protein kinase 23), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04740.1); similar to CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G20410.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to calcium-dependent protein kinase [Malus x domestica] (GB:AAR28084.1); similar to calcium-dependent protein kinase [Solanum lycopersicum] (GB:CAC87494.1); similar to calcium-dependent protein kinase [Nicotiana tabacum] (GB:AAC25423.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.205167042077356 -1.84994567293467 0.0916419241298832 1 0.880620960955354 8.2487383037201 -0.205167042077356 0.124888875167859
AT2G22950_at 1.28440474999528 1.29015260035870 1.49311526622282 1.62953215837204 0.907632061917576 1.13285167012771 1.40818794815847 1.67722282398724 1.30238396862882 1.57896736077137 0.880053994459194 1.24385935367091 1.38043033982454 0.976640537933758 1.03913014228748 1.47690755060070 1.10417178891259 1.51951151474806 1.354355558406 0.175354055154538 0.173820462281256 0.176519088649672 0.177477496556617 0.177736524811553 0.173649340055567 0.178634004921042 0.174272191692267 0.183351341036431 0.176756007181290 0.179129539460515 0.181610327099732 0.182134517586601 0.177982395237352 0.19181839876367 0.174124401745844 0.184185924803471 0.182055024349515 0.177052930527333 2 2|0 +|/ 9776051 9776809 9776474 9773207 9776846 + gene protein_coding_gene FALSE TRUE AT2G22950.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) Identical to Putative calcium-transporting ATPase 7, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 7) (ACA7) [Arabidopsis Thaliana] (GB:O64806); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to ACA1 (autoinhibited Ca2+ -ATPase 1), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G27770.1); similar to Cation transporting ATPase, C-terminal [Medicago truncatula] (GB:ABE85875.1); similar to plasma membrane Ca2+-ATPase [Glycine max] (GB:AAG28435.1); similar to type IIB calcium ATPase MCA5 [Medicago truncatula] (GB:AAM44081.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.166761692297816 -1.84987309388473 0.0916530740867925 1 0.880519815363533 2.66013263426251 -0.166761692297816 0.065153700283701
AT1G01960_at 8.30266751954781 8.36482624202412 8.12117024178466 8.20127382226113 8.53312518499703 8.08271464678292 8.03466068930326 8.04830893318471 8.39001002762247 8.18144468933134 8.59913806416149 8.7776838442154 8.62018004880384 8.48569506023483 8.63033433270088 8.46522718929873 8.49316307240047 8.60066370425628 8.27356271136254 0.119385780306092 0.119385780306092 0.120353827111929 0.122859658804481 0.120552539578842 0.126205309500017 0.121875475056859 0.134760133460618 0.132299232821438 0.122473496621231 0.119385780306092 0.122340228094222 0.119385780306092 0.124893265998824 0.122348840451691 0.124473879647783 0.127541977870897 0.123439689343108 0.124117529214082 1 1 - 330846 331347 331156.727 330588 337582 - gene protein_coding_gene FALSE TRUE AT1G01960.1 EDA10 (embryo sac development arrest 10); guanyl-nucleotide exchange factor similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G35380.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain SEC7-like; (InterPro:IPR000904) 0.174646658172500 1.84971980455526 0.091676627247808 1 0.880306198782859 16.6439349802929 0.174646658172500 0.079931065769601
AT1G80680_at 7.63399411114318 8.001235846531 7.60679448353855 7.68179053368829 8.02006705238369 8.01923200598889 7.2042942784536 7.36909850087295 6.6924775266344 6.91329373868121 7.01499025730554 7.13943947066808 7.05741729038367 6.40593800653073 6.9367273700736 7.03132412038193 6.92776584885844 6.97091212126578 7.02260895627123 0.180157046955068 0.177467245907705 0.183016402200693 0.176665700253467 0.176665700253467 0.177138353595479 0.176665700253467 0.178156654934048 0.188315739643793 0.181291095149967 0.179390243943049 0.178043264118198 0.182627140926791 0.187412569797031 0.182873136501462 0.179525952262476 0.194970182655248 0.178360960292081 0.178967362683635 1 0|1 /|+ 30332170 30333357 30332938.889 30328900 30333661 + gene protein_coding_gene FALSE TRUE AT1G80680.1 PRE (PRECOZ, SUPPRESSOR OF AUXIN RESISTANCE3) Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens. similar to transporter [Arabidopsis thaliana] (TAIR:AT1G10390.2); similar to Peptidase S59, nucleoporin [Medicago truncatula] (GB:ABE79927.1); similar to Os03g0172000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049116.1); contains InterPro domain Peptidase S59, nucleoporin; (InterPro:IPR007230) 0.169626452402098 1.84947809329451 0.091713777858412 1 0.879969378840437 14.5979088771812 0.169626452402098 0.0708578082278503
AT2G13630_at 1.50300620127561 1.48465048155750 1.50654807698891 1.66519861129537 1.40250507912207 1.82460283980394 1.85888072896748 1.9100859364413 2.06651543127298 2.24282844700187 1.40517952332267 1.74219931922103 1.89215240854757 1.75904506098068 1.73790992754811 1.89525459017676 2.19050656923360 1.52858528222648 1.77178575717018 0.211825385511757 0.211130776476288 0.219908745286025 0.211130776476288 0.217325258852002 0.211392536749436 0.214790314211315 0.211571083967390 0.219173426821983 0.216099954545677 0.214157938050688 0.211130776476288 0.211130776476288 0.211130776476288 0.211130776476288 0.212841104879454 0.217565500506583 0.214690901641834 0.217029302516115 2 2 - 5691654 5692189 5691893.273 5691620 5692513 - gene protein_coding_gene FALSE TRUE AT2G13630.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G04660.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.173815655957898 -1.8489743850009 0.0917912413155972 1 0.879267538621425 3.54238339291758 -0.173815655957898 0.0786010048716274
AT1G05270_at 6.18943010947053 5.67396726605362 5.82125727465881 5.57204054095968 5.23699233519198 5.97050396506547 5.3731123794995 5.46340636790092 5.04213481547613 4.25955624790101 4.82028579251923 4.73671288296096 5.17436296555948 5.24082849032766 5.36713445465575 5.0797234401168 5.15970086569061 4.57313215171239 4.26968881001575 0.244018963823181 0.246251357063863 0.241051932002085 0.244678928767414 0.249902500843603 0.256277831764277 0.240520244148479 0.248246616644481 0.244806754545558 0.240499335116472 0.247065361652834 0.240499335116472 0.240499335116472 0.248069903399064 0.241345732870988 0.241747345278027 0.249271978076312 0.246017370618602 0.240499335116472 1 1 - 1533946 1534245 1534099.5 1531640 1534389 - gene protein_coding_gene FALSE TRUE AT1G05270.1 TraB family protein similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT2G32340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93860.1); similar to Os05g0499500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055957.1); contains InterPro domain TraB determinant; (InterPro:IPR002816) 0.235205668774867 1.84862911759688 0.0918443733641633 1 0.878786514185906 10.4339779906370 0.235205668774867 0.161785587003247
AT4G18290_at 2.72536896664476 3.46177992228177 2.52039982239418 2.51076204885522 3.06285728369793 2.61189784430645 2.50201667444323 2.49157388676048 3.21993742232083 2.58956431952806 2.57368443007748 3.29718725747624 2.66513320394039 2.17467319804612 2.82080782503116 2.66916961144188 2.719748306277 2.69552055709431 3.28838817089871 0.211528448526470 0.224678922270959 0.214257883491218 0.224033353926477 0.212109409867992 0.219118753196506 0.20744561977046 0.209108151625158 0.221716967610839 0.219469048990990 0.208794917195856 0.211618789860385 0.210436760190236 0.216092374350606 0.212816169017364 0.209581402916234 0.229716097421172 0.217547671695556 0.209585792508709 4 4|0 +|/ 10117849 10118381 10118097.3 10115429 10118610 + gene protein_coding_gene FALSE TRUE AT4G18290.1 KAT2 (K+ ATPase 2); cyclic nucleotide binding / inward rectifier potassium channel potassium channel Identical to Potassium channel KAT2 (KAT2) [Arabidopsis Thaliana] (GB:Q38849;GB:O49732;GB:Q9C5V9); similar to KAT1 (K+ ATPase 1), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G46240.1); similar to voltage-gated potassium channel (GB:AAA67070.1); similar to inward rectifying potassium channel [Brassica rapa subsp. pekinensis] (GB:AAX19659.1); similar to inward rectifying potassium channel [Vitis vinifera] (GB:AAL24466.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) -0.224672517480955 -1.84820579198702 0.0919095559963674 1 0.878196798078366 5.60314231596747 -0.224672517480955 0.149456268649168
AT3G47370_at 9.11244594041141 8.95971610390132 8.95146568523081 8.96494953257795 8.27382750647844 8.32534549469695 9.1584670308058 9.34542715944303 8.38684680739036 8.09570328071609 8.37307386381327 8.90903561664978 8.31935622788623 8.21787281094826 9.19246346365768 8.11880691610985 8.2112202393742 7.99417930944226 8.16632875458613 0.121161593822365 0.114597626763980 0.118748352623527 0.115434557868346 0.120299532518601 0.126559800772141 0.120002706274973 0.118953450813916 0.122722806714887 0.125045804348000 0.119241385918705 0.115307586215201 0.119803239788349 0.117678263749806 0.115096501914944 0.118610903185225 0.126090054544087 0.125025871800512 0.116428939814916 3 3 - 17464659 17465396 17464970.273 17464463 17465706 - gene protein_coding_gene FALSE TRUE AT3G47370.1|AT3G47370.2|AT3G47370.3 40S ribosomal protein S20 (RPS20B)|structural constituent of ribosome Identical to 40S ribosomal protein S20-2 (RPS20B) [Arabidopsis Thaliana] (GB:Q9STY6); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana] (TAIR:AT5G62300.2); similar to Os10g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064232.1); similar to Os03g0249400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049560.1); similar to 40S subunit ribosomal protein [Oryza sativa (japonica cultivar-group)] (GB:BAA02157.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, eukaryotic and archaeal form; (InterPro:IPR005729) -0.157204447736675 -1.84768335830877 0.0919900574911609 1 0.877469107870905 17.2031025584679 -0.157204447736675 0.0427821125114796
AT1G20300_at 3.80353030381737 4.39070200367204 3.72417551393497 4.10845814387114 4.41721172779383 3.9471310291269 3.99391929756163 4.48021676459255 3.88601276677159 3.8656167524012 3.40922299284195 3.48805816610693 3.15917190782883 3.44077597286148 3.48825259538712 3.73553153686773 3.39138108276723 3.58079988655578 3.72595327654105 0.222840437860867 0.21286027964336 0.222878672006170 0.217777553064583 0.222026417199241 0.232273410013429 0.212769542781131 0.212769542781131 0.223043711140083 0.214248967359825 0.218647294950824 0.213178882528089 0.215141292436598 0.219501461058888 0.219026481562517 0.212769542781131 0.216958327799255 0.213683763221819 0.216829560901039 1 1 + 7030754 7031268 7030996.273 7029619 7031525 + gene protein_coding_gene FALSE TRUE AT1G20300.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to Peptidase S8 and S53, subtilisin, kexin, sedolisin; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81863.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.241029826490835 -1.84732636529789 0.0920451034893227 1 0.876971914090098 7.75192319782467 -0.241029826490835 0.168664373310706
AT1G12270_at 7.27059626208392 7.51051952234189 6.99535911856514 7.26401079103919 7.60142962816973 7.03856007382467 7.29542660319195 7.28761447008875 6.69574973107722 6.79829545455127 6.36864736057872 6.7053174795657 6.35063024261667 6.41821879575397 6.84800087111619 6.84055563385257 6.39770838545842 6.53035970291663 7.01698479375741 0.189536447083895 0.176500737105517 0.189281632783700 0.176500737105517 0.181546406810493 0.207645172102956 0.179311776601532 0.185763260242642 0.184975896087731 0.184996820644818 0.194259766226823 0.185078157396198 0.185739148480402 0.185639680532396 0.177979074299007 0.180591928152622 0.180702991592300 0.188263595802634 0.183020503894255 1 1 + 4173564 4174539 4173999.455 4172073 4174773 + gene protein_coding_gene FALSE TRUE AT1G12270.1 stress-inducible protein, putative similar to binding [Arabidopsis thaliana] (TAIR:AT4G12400.2); similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047563.1); similar to Os04g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053429.1); similar to Heat shock protein STI (Stress-inducible protein) (GmSTI) (GB:Q43468); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) -0.197889747836607 -1.84669765875305 0.0921421193380899 1 0.87609640924196 13.9801594597187 -0.197889747836607 0.115651806020333
AT1G41870_at 1.10175017018597 1.35798199187587 1.39033661549726 1.20451480937784 0.568288581638492 1.00181578488964 1.2033925181307 1.34173529748259 1.30635307665854 1.44708961254606 1.11467755627083 0.827856360005584 1.36365364832703 1.25168547323306 1.12679452168717 0.942934406589033 1.12300233518058 1.41812662536197 1.15961568474363 0.203065216823984 0.202199564186936 0.204933401732848 0.205246737050495 0.198617779142733 0.198038973629887 0.201238760985814 0.206040140889212 0.198038973629887 0.202953475286282 0.202298014641133 0.202217284465117 0.203716317847892 0.202878712547508 0.201949025630925 0.198038973629887 0.200484385948116 0.207465338110540 0.204718859595405 1 1|0 +|/ 15650484 15651463 15650984 15649932 15651492 + gene protein_coding_gene FALSE TRUE AT1G41870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1) -0.184118736026070 -1.845913614167 0.092263236711537 1 0.875004788287404 2.37144904970878 -0.184118736026070 0.095927409652404
AT1G55325_at 6.13008260449309 6.3562762903548 6.19370398449932 6.40180954083933 6.58486806749735 6.84926931315998 5.4543263023728 6.19859123689576 5.37294585925026 5.72342594875089 5.50545344704395 5.61756723433292 5.0817421580671 5.57920483323953 5.67579145746223 6.08476362369724 5.48977797074274 5.50634903845664 5.69173541495609 0.205101987656207 0.199118193874666 0.206538238056359 0.199326227192210 0.198268145076384 0.207584945321340 0.207121963899158 0.204002943359328 0.209758527452235 0.200304465348811 0.197102667766414 0.197102667766414 0.202733217205995 0.201782227179388 0.198037126533349 0.199698244542991 0.210139995021789 0.201250014928904 0.200086000945552 1 1 + 20649980 20650472 20650213.545 20641103 20650885 + gene protein_coding_gene FALSE TRUE AT1G55325.1 similar to Rhodopsin-like GPCR superfamily [Medicago truncatula] (GB:ABE89148.1); similar to Os05g0447500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055694.1); contains InterPro domain TRAP240; (InterPro:IPR009401) 0.222069548682214 1.84583927832868 0.0922747275050135 1 0.874901302424553 11.8529243981971 0.222069548682214 0.146669296573912
AT1G14120_at 1.36564202651570 1.13686653091789 1.0133094982816 1.12802741355631 0.990717560714766 1.23271352751505 0.971027598078754 1.18431834660495 1.50724040585976 1.24154184564175 1.22868068576376 0.955643616558486 1.51686319389657 1.05079001483998 0.811407754194588 0.966219793863146 1.09022198533842 1.18092214517130 1.34861257915161 0.189139208270162 0.200937906161717 0.19585463225179 0.194548818775722 0.183635387115852 0.198853267776732 0.196358953909163 0.193385274086143 0.197579442943016 0.189590865762002 0.192521654616192 0.194191921892038 0.188678687134260 0.186059120383746 0.191274834129657 0.192446132184494 0.183635387115852 0.191953925872212 0.191385661260491 1 1 - 4833652 4834288 4833964.909 4833515 4835086 - gene protein_coding_gene FALSE TRUE AT1G14120.1 2-oxoglutarate-dependent dioxygenase, putative similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G14130.1); similar to 2-oxoacid-dependent dioxygenase [Prunus mume] (GB:BAE48659.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.169488126846740 -1.84567485551497 0.0923001485517137 1 0.874672410004839 2.36077377556695 -0.169488126846740 0.0712584848108188
AT1G54060_at 6.9515297065875 7.1368258164281 6.94726658573777 7.0614063386881 7.4201316665337 7.53810906284683 7.12934739307836 6.9658124011603 6.7641339234086 6.58636368002104 6.98883964050173 6.52992942681409 6.79921833452849 6.72663676681689 7.16649663082522 7.09249644907455 7.25172099266326 6.80058030227759 7.03438779021688 0.169787403317051 0.165991409620691 0.167985375792532 0.163784933779574 0.170768423416991 0.173154234909069 0.171004074112547 0.172282750008356 0.183891129778665 0.175914226403641 0.169717060223353 0.168431484352637 0.164130617175809 0.168752261366134 0.173111467399074 0.163784933779574 0.168529845634505 0.179108818946133 0.176465912435056 1 1 + 20185192 20185566 20185394.909 20184347 20185992 + gene protein_coding_gene FALSE TRUE AT1G54060.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G14180.1); similar to Os02g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047163.1); similar to OSIGBa0140O07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67239.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.160188802096796 1.84537898958854 0.0923459078872623 1 0.87426056068233 14.0010294292925 0.160188802096796 0.051343569263302
AT1G66670_at 11.6337892136776 11.6266677511882 11.8287298365164 11.7506004652174 11.8850592398727 11.4712734238950 11.3676074652931 10.9757553870447 10.6336601835805 10.6047552423375 10.4074119994908 10.3560562073968 10.5101765700265 10.6020815902535 10.2582605333046 10.7016495425787 10.6318922463121 10.4497513037579 10.1107169284640 0.0933003663100591 0.0880655449377115 0.0905805046374171 0.0901875209073405 0.0880655449377115 0.090535873808008 0.0882041478316378 0.0903743029375344 0.0942298698944828 0.0880655449377115 0.0886300710810915 0.0880655449377115 0.089845377881998 0.0897383256993758 0.0961289340938554 0.0880655449377115 0.0976105970562834 0.0913798740255474 0.0891012836961068 1 1 - 24867693 24868434 24868058.182 24867448 24869365 - gene protein_coding_gene FALSE TRUE AT1G66670.1 CLPP3 (Clp protease proteolytic subunit 3); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to CLPP4 (Clp protease proteolytic subunit 4), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT5G45390.1); similar to ClpP putative protein [Brassica napus] (GB:CAC80640.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.186455000710284 1.84534284759823 0.0923514991186198 1 0.874210252716172 22.0371207398052 0.186455000710284 0.0995510647613233
AT2G34370_at 1.63250580655555 1.86751784285840 1.477001791597 2.04588813003528 1.78163462733936 1.76497193293958 1.96148256941550 1.81497447673108 2.58597166612739 2.39173100989152 2.14540852254663 1.75085126037938 1.74959455995966 1.7644738731466 1.59386222405660 2.08289859566309 1.88565540173625 2.47441736591476 1.81960386952277 0.172775288886221 0.177461381966832 0.178248334698317 0.173706766322902 0.173794457185584 0.175328100043629 0.170065677682406 0.170397903144276 0.177566610015433 0.172027194360386 0.173282985900840 0.173743687155792 0.171036857721496 0.178882484798796 0.179558800290950 0.169182578303937 0.17216421010641 0.175805740521531 0.169740215456172 2 2 + 14518627 14518932 14518774.091 14517561 14518970 + gene protein_coding_gene FALSE TRUE AT2G34370.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G29710.1); similar to Putative selenium-binding protein, related [Solanum demissum] (GB:AAT66765.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.193309838250423 -1.84511733954928 0.0923863926271761 1 0.873896366680709 3.8915791841536 -0.193309838250423 0.109532063222962
AT4G22730_at 2.65408169789817 2.9416964429096 2.54166861596747 2.44772745349739 3.89939312675529 3.26276631676255 4.94596228067148 3.95306362763737 3.78679674033853 3.99815236731584 5.36855635430284 4.96162850657944 4.12239578119074 4.20353220613763 4.43900796662236 3.54737673081477 3.08330415290782 3.67969169157936 4.65914957023101 0.240973329778279 0.232966708047410 0.239265393320996 0.240367276666793 0.240915474745513 0.235774521311651 0.242630755124174 0.234377169688344 0.278150404191763 0.233499429852310 0.242598342361812 0.235705336495565 0.237581328562118 0.232966708047410 0.242569512115493 0.232966708047410 0.236194992380145 0.247968277387586 0.232966708047410 4 4 + 11943096 11943596 11943362.182 11941142 11943896 + gene protein_coding_gene FALSE TRUE AT4G22730.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G45340.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G51560.1); similar to Os06g0134700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056717.1); similar to putative somatic embryogenesis protein kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68873.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.279079176447535 -1.84464228839420 0.0924599381800231 1 0.873235200205102 7.49265472846008 -0.279079176447535 0.210721225920104
AT4G32000_at 2.97479870148836 2.78123854084148 2.93619674364790 2.45681727324714 2.61709022597793 2.99736946423908 2.85864633965593 2.62861795420623 3.08193208424227 2.81516852336934 3.56845201116043 3.82377987730978 3.44444056846108 3.8527350647548 3.31627241307412 3.85092488597126 3.68904630488846 3.30608406546331 3.54971495764393 0.234331184624562 0.227139742177689 0.228478858344575 0.235332369774254 0.225855516189715 0.229668774219545 0.221034376717147 0.240960496682302 0.225044980398918 0.230857553646438 0.231114598808958 0.237703766364047 0.221034376717147 0.232952783851495 0.232041503148303 0.224245477472659 0.228833242698926 0.225386774935973 0.237620973566491 4 4 - 15474392 15475809 15474915.75 15474068 15476661 - gene protein_coding_gene FALSE TRUE AT4G32000.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25220.1); similar to putative protein kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD25150.1); similar to Os05g0319700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055185.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.199285709931787 1.84373015858030 0.0926013008951477 1 0.871965945388155 6.15904961573163 0.199285709931787 0.117981604436074
AT1G11480_at 7.58885627392058 7.60799541084983 7.46170017503464 7.51626388827607 7.8582507661514 7.72573373689768 7.19338481367788 7.52168763589673 7.29732155724819 7.3553444234935 6.67947899804113 6.71089045645257 6.72695629509932 6.77912168298582 6.82023540955568 6.97956410225418 6.85409763701048 6.60141289831102 7.12929407015107 0.180870972776083 0.176965451800873 0.186907264473412 0.186228772621596 0.17757296889241 0.185397060790949 0.174283627376861 0.177549522078440 0.188374021227710 0.187856562681622 0.187464742761975 0.173439338668525 0.186426735229914 0.177945921431731 0.177196828853143 0.173234073962108 0.190425349688723 0.175575521436555 0.180358523339553 1 1|0 -|/ 3864401 3865111 3864657.5 3864153 3866969 - gene protein_coding_gene FALSE TRUE AT1G11480.1|AT1G11480.2 eukaryotic translation initiation factor-related similar to Os07g0546100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059920.1) -0.164588778665064 -1.84213683252498 0.092848711012886 1 0.869749509150182 14.5740456052188 -0.164588778665064 0.0620798509664014
AT2G33410_at 7.1647710924811 7.57359878598459 7.3151314964409 7.26305657282426 7.21403150869399 7.61516605429659 6.55806111966653 6.63695368208205 7.59072935080003 7.24684862233509 7.02933199882789 7.38355576282699 7.69320008798864 7.17054702700142 7.4580915711367 7.20466957689046 7.44375064229514 7.16349322012044 7.1026036047025 0.150676293719089 0.152762838232865 0.149955152020055 0.158997490984091 0.158001532281429 0.152362501326337 0.155934720565402 0.156504941109533 0.160107737454406 0.152493778839652 0.149991429566455 0.152833248341209 0.153470633431387 0.159089995780677 0.151844760078877 0.148517915373208 0.155774858413325 0.162210191925611 0.156492966088771 2 2 + 14163918 14164419 14164178.091 14162947 14164838 + gene protein_coding_gene FALSE TRUE AT2G33410.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT4G14300.1); similar to Os10g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064824.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.186718182308561 1.84193588181087 0.0928799573933387 1 0.869470036956508 14.4834582116413 0.186718182308561 0.100458916617556
AT3G51670_at 8.68702094239245 8.91687589051953 8.61055895025907 8.94000259572626 8.9793678548363 8.52574532626718 8.0063823515988 8.08890850538487 8.5041998167655 8.20014113255832 8.56839354983933 9.09999499240862 8.70118300243514 8.29782268577778 8.71525041079648 8.48934006385003 7.58817288622541 8.15430553666777 8.52647025894808 0.155807617766903 0.161551639507828 0.166882716169614 0.164353430632940 0.160317622166060 0.165103849352519 0.165291510813962 0.166363030615362 0.174499736797257 0.158758997453699 0.156759817558783 0.159504368637812 0.156524856849202 0.160174164829392 0.163830363246032 0.156641969769146 0.17712839538618 0.164769397609563 0.164930348494113 3 3 + 19180526 19181793 19181445.182 19179829 19182129 + gene protein_coding_gene FALSE TRUE AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-6 (PATL6) [Arabidopsis Thaliana] (GB:Q9SCU1;GB:Q9XFS6); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G72160.1); similar to hypothetical protein [Cicer arietinum] (GB:CAB95829.1); similar to Os05g0345100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055255.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.190329623770528 1.84145272183758 0.0929551246793907 1 0.868798142210837 17.0253969490017 0.190329623770528 0.105825491890640
AT4G23890_at 11.0092001258359 11.2589353521759 10.9359993313409 11.1543722343607 11.2049544614517 11.0529851225415 11.6192716112821 11.6937554124563 11.2648769880308 11.7030241600786 11.3872857586445 11.5883700556765 11.4972041678475 11.5058470420859 11.2606063205276 11.7962786726520 11.4937859807036 11.5524399149304 11.6319325991962 0.0828080571328116 0.075777690038555 0.079991032785513 0.0775207358939 0.0766155961915574 0.0792955591764828 0.0796260667669364 0.0785602230788993 0.084501061823411 0.076122904954411 0.0845634077260875 0.075777690038555 0.075777690038555 0.0815155644889993 0.0805959683504593 0.0759899818448627 0.0835317100511998 0.0782064816258217 0.075777690038555 4 4 - 12420624 12420980 12420788 12420424 12421474 - gene protein_coding_gene FALSE TRUE AT4G23890.1 similar to Os07g0196200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059119.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28447.1) -0.165631757324454 -1.84114556983789 0.0930029385987538 1 0.868371052753113 22.7629367838816 -0.165631757324454 0.0644490802221135
AT4G05100_at 1.095057207909 1.6832046831219 1.84494819218938 1.42330565734636 2.22989328176845 1.98894597130563 1.29600712628742 1.81733760082452 1.82340623614672 2.02882587202967 2.06552951580207 1.7605662507834 1.98812859467032 2.0020785786551 1.41822300321187 2.10196087367084 1.72667126886084 2.14209668881528 1.65091751315526 0.200801791291972 0.199243224064963 0.220701334505017 0.199216582429834 0.207823112778761 0.199216582429834 0.205521330889546 0.205122887159492 0.199216582429834 0.203658402911256 0.206436342031289 0.201548929668764 0.203543562230487 0.204409274117052 0.202251823901968 0.199216582429834 0.218787455133615 0.201738250033182 0.201009657944545 4 4 + 2619345 2619763 2619547.182 2618452 2619885 + gene protein_coding_gene FALSE TRUE AT4G05100.1 AtMYB74 (myb domain protein 74); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G21440.1); similar to N-6 Adenine-specific DNA methylase; Homeodomain-related [Medicago truncatula] (GB:ABD32341.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.232572630407455 1.84078738275563 0.0930587255174969 1 0.867873043176968 3.53985749205371 0.232572630407455 0.159880496743186
AT1G67480_at 7.56747336213131 7.42009237649669 7.44413499167183 7.36950990556927 7.79119612047213 7.50669618019612 8.23795980461314 7.80661333348462 7.43981158035428 8.08124713174682 7.65647570975288 7.89193910553635 7.72621591344614 7.53022278382581 7.3936033762878 8.14796793597957 8.08358634972858 7.63984727241535 8.1581162964511 0.137702513666802 0.145601207315035 0.144698015836391 0.144491841822609 0.140894550027523 0.143896496768977 0.146405377085996 0.147188671131198 0.166045295885256 0.145340928776652 0.140578442986819 0.145260496627759 0.149369474406150 0.142284283186509 0.151048773156098 0.146264547509276 0.14391680851339 0.151519621055563 0.149955175798735 1 1 + 25281488 25282168 25281926.091 25279957 25282381 + gene protein_coding_gene FALSE TRUE AT1G67480.1|AT1G67480.2 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G27420.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE78679.1); similar to Os04g0380300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052597.1); similar to Os02g0504900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046914.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.182238225008303 -1.84032356519933 0.0931310096903017 1 0.867228238292787 15.4688548303572 -0.182238225008303 0.093879571634786
AT3G20190_at 1.67258162956416 1.38649135568551 1.73276532529919 1.66198199803933 1.4166244490852 1.66897418891664 1.59513560890811 1.18921393367072 2.55326906646897 1.70154156810641 1.61337331497791 1.18950141483212 0.90280154757222 1.63244901189697 1.66114653609308 1.35189830285509 1.91024774026789 1.77898033146142 1.84406065868640 0.171522432413793 0.176625249748627 0.162917793044805 0.166543488699833 0.166995506270969 0.162763102470154 0.16953449695676 0.159643364547020 0.171746332733793 0.170250030640363 0.164047730789409 0.163879626578319 0.172825039028092 0.164940403126135 0.165856262078875 0.161954396198706 0.163235269766708 0.169945257417934 0.166258243790778 3 3 + 7046642 7047184 7046875.182 7044949 7047396 + gene protein_coding_gene FALSE TRUE AT3G20190.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G50610.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79211.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.184338232190688 -1.83994579337998 0.0931899219451545 1 0.866703113027454 3.30947449752036 -0.184338232190688 0.0971745811514734
AT3G21890_at 3.30387330549299 4.28070719292703 5.41557443553753 5.73199500943436 3.08062414768103 3.63674589077031 5.50053873534039 5.76463926241426 3.94784595531571 4.69633144580925 3.30595938607402 2.69344861195068 4.32820430814354 4.34625303577923 3.32431559538879 4.80886910824155 5.92521491075111 3.53663692486559 4.36820656771458 0.269489722660704 0.257997540708082 0.252838221697069 0.262338734204233 0.257409778775395 0.269356531697101 0.258869427413657 0.261289400972882 0.258598524765626 0.254246974370751 0.261243245866609 0.258630338934867 0.254509300603013 0.256101099356752 0.262435023339602 0.25322804887297 0.267291902017681 0.257200454104084 0.259092535762812 3 3 - 7709305 7709608 7709486.364 7709120 7709740 - gene protein_coding_gene FALSE TRUE AT3G21890.1 zinc finger (B-box type) family protein similar to DNA binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G15248.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46419.1); similar to Os02g0176000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046060.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.27502667049253 -1.83981873345654 0.0932097441815483 1 0.866526503848448 8.77487427649765 -0.27502667049253 0.207185312361273
AT1G52790_at 0.9431325954943 0.852984125985133 1.16757888174677 1.37669373910627 0.894891180658409 0.886764361011288 0.694029689194399 0.759477034937054 1.11109737468081 0.749447562874074 0.702206252857456 0.929411453873287 0.847637069026774 0.84556686198646 0.892150287271308 1.29884802711873 1.24191729712623 1.24938477397337 1.01384202929044 0.211343441156415 0.205790574299559 0.21169276210351 0.222018632681799 0.205790574299559 0.217713344539573 0.211017569650604 0.206925861066799 0.211551789083527 0.211485654939996 0.214557578973691 0.217260106987443 0.217446129396706 0.206583995941811 0.213544172553803 0.205790574299559 0.210429712598139 0.218057229771254 0.205790574299559 1 1 - 19665870 19666468 19666130 19665862 19666969 - gene protein_coding_gene FALSE TRUE AT1G52790.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a putative oxidoreductase, 2OG-Fe(II) oxygenase family protein, similar to GS-AOP loci (GI:16118889, GI:16118887, GI:16118891, GI:16118893); contains PF03171 2OG-Fe(II) oxygenase superfamily domain similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G52800.1); similar to Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD33293.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.155918721591861 1.83945415726940 0.0932666420425942 1 0.86601978734995 1.92645357194302 0.155918721591861 0.0410271587968957
AT1G03710_at 2.40692092179903 2.65813534105677 2.12165652738971 1.93686790973352 1.81051125767515 2.54188353661981 2.22649108273273 2.63270661288895 3.04626805382083 2.27448981430466 2.64621633110212 2.21514278771435 2.4478274730094 2.65914415832891 2.4995271998346 2.82833290433949 2.95918888787548 2.73636836597765 2.78314253341546 0.208692576996802 0.205685228146782 0.210242377449976 0.205685228146782 0.21584671683591 0.213215574285230 0.216298749555107 0.215213872612116 0.215454677336584 0.21850099291495 0.205685228146782 0.210738926331015 0.212358107844149 0.2120471317263 0.212333883871579 0.215053928988370 0.213355041603493 0.207447481359823 0.211239473970200 1 1 + 923540 924493 923933.8 923426 924726 + gene protein_coding_gene FALSE TRUE AT1G03710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03565.1); contains InterPro domain Arabidopsis thaliana cystatin-related protein; (InterPro:IPR006525) -0.227832651044527 -1.83937933137151 0.0932783237348591 1 0.865915794445417 4.95453097242182 -0.227832651044527 0.154510971053817
AT2G29620_at 0.94086173404737 1.09101418522705 1.17055846272547 0.785114277268747 0.921105960523504 0.926426657483898 1.17928380534780 1.19417920643953 1.41351202943635 1.31296046414257 1.31634972539246 1.17743663647364 1.29152896106092 1.45281076287325 1.19802211497480 1.30280145266280 1.01066866008623 0.875165494467608 1.44580614162032 0.207165538060458 0.207881365839527 0.219419869578299 0.215817059333101 0.207012755515322 0.212096971769201 0.209204487478691 0.203197657227541 0.208421195616982 0.212666021182679 0.211646123796107 0.207278563599912 0.209219750016159 0.210339855544709 0.208953251835677 0.209353432191574 0.208786628525003 0.215788009068059 0.216205153385206 2 2 - 12670314 12671067 12670778.818 12669818 12672880 - gene protein_coding_gene FALSE TRUE AT2G29620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07330.1); similar to H+-transporting two-sector ATPase, alpha/beta subunit, central re (GB:ABE91554.1) -0.169097481166241 -1.83924936190850 0.093298617530403 1 0.865735167951332 2.32299679666561 -0.169097481166241 0.0716377671341297
AT3G15470_at 5.51083162921631 5.67714612331285 5.26093188945639 5.33815548188758 5.59964842864577 5.58173159314661 6.08355636182457 5.87480703926551 6.40544875757375 5.72628880550200 6.29843653383589 6.26772475299778 5.59573971413974 5.87955534720314 6.66397043572603 5.71398981615969 5.74573811432862 6.13017508977256 5.90467055657113 0.160926807226416 0.163358117956157 0.167655320255504 0.158887054704604 0.166370965526356 0.166004727404982 0.163537581637247 0.167687402794529 0.162742945483352 0.164050910997862 0.165286410820769 0.166729501859226 0.171015566767463 0.166813744941543 0.163643630067155 0.167584688791311 0.178079948369821 0.162467368154344 0.165187585645605 3 3 - 5216640 5217202 5216950.091 5216269 5220225 - gene protein_coding_gene FALSE TRUE AT3G15470.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54200.1); similar to OSJNBa0074L08.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE02139.2); similar to Os04g0678300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054272.1); similar to H0801D08.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86247.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.158344127241290 -1.83828809661670 0.0934488376997941 1 0.864399429849707 11.6403772010458 -0.158344127241290 0.0481829953210615
AT1G70490_at 10.6629233844686 10.7592643711176 11.0401898608745 11.1446855995506 10.7583105774654 10.7887396742192 11.1215671672757 11.1765274857409 10.9554562020397 10.9434620182225 11.2828256562677 11.3384593160275 11.0767940494376 11.1626456410657 11.2046259494314 11.1757336360731 10.9395558560586 11.2694855436730 10.7422021880920 0.102774465893845 0.102449093816894 0.104526388441442 0.103580526550851 0.102887888334195 0.104282414687067 0.101072122855898 0.105483452458946 0.115245804147960 0.102170453965775 0.104515526029891 0.102238493924614 0.103151316154644 0.105847101317128 0.113278269149685 0.101481979863512 0.104563311916600 0.107785154419317 0.108510673605108 1 1|0 -|/ 26567956 26568784 26568345.875 26567587 26569473 - gene protein_coding_gene FALSE TRUE AT1G70490.1|AT1G70490.2|AT1G70490.3 ADP-ribosylation factor, putative A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Gossypium hirsutum] (GB:CAD12855.1); similar to ADP ribosylation factor 002 [Daucus carota] (GB:ABB03801.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.151901531214844 1.83776592363004 0.0935305321845207 1 0.86367397899074 21.9623456028169 0.151901531214844 0.0268917769299951
AT2G26170_at 5.74740816178005 6.45713672476084 7.66622062375053 7.60691671411106 5.34337722720556 5.06117979208983 7.2356479725108 6.74189839505894 5.08988105502706 6.3166218475035 5.25134352589637 5.51173798084077 5.52006159900975 4.94687562072051 3.80118230228357 5.84030301963446 6.93798578309154 5.82884547133507 5.96159393118909 0.220274932117488 0.216067772195413 0.214036104475236 0.212771231957118 0.214097082060428 0.219625831173714 0.214189285965909 0.220023741818068 0.221616473521688 0.223457777940280 0.212771231957118 0.219227486427849 0.218698695880718 0.219993582300812 0.212941055305995 0.213855761108330 0.221292666403636 0.22181062415127 0.220927613648242 2 2 + 11149623 11150239 11149976.818 11147887 11150438 + gene protein_coding_gene FALSE TRUE AT2G26170.1|AT2G26170.2 CYP711A1 (MORE AXILLARY BRANCHES 1); oxygen binding Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST). similar to CYP71B11 (cytochrome P450, family 71, subfamily B, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G25120.1); similar to cytochrome P450 monooxygenase CYP711A12 [Medicago truncatula] (GB:ABC59098.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE86253.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to cytochrome P450 monooxygenase CYP711A12 [Medicago truncatula] (GB:ABC59098.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE86253.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.230336461313393 -1.83764816862684 0.0935489641011205 1 0.863510396616751 12.1045519634541 -0.230336461313393 0.157722558371022
AT3G59020_at 8.42560951325696 8.27431392122337 8.38870426381758 8.28571015700617 7.90882184563322 7.98316686588482 7.78837841614359 8.05889770141619 7.47879398853273 7.65295550582674 8.00611500011894 8.04170792638314 7.64079119337253 8.00438725614232 8.1343304481879 7.79633371643299 8.0252670495929 7.48797297632928 7.58529957461013 0.152065337367237 0.161176291957648 0.161375880132956 0.166731883564544 0.152575907455462 0.161957696551635 0.149115532532882 0.153531160774994 0.163833656594533 0.159751196013116 0.156290914131087 0.148697578761340 0.162463615388912 0.162557570793176 0.150213418344282 0.155430969026497 0.167926591245074 0.156697896870658 0.159827476925912 3 3|0 -|/ 21822031 21822751 21822414.7 21821237 21828532 - gene protein_coding_gene FALSE TRUE AT3G59020.1|AT3G59020.2 protein transporter similar to SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2), protein transporter [Arabidopsis thaliana] (TAIR:AT2G31660.1); similar to Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) (ISS) [Ostreococcus tauri] (GB:CAL58278.1); similar to OSIGBa0137O04.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66582.1); similar to OSJNBa0008A08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01598.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494)|similar to SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2), protein transporter [Arabidopsis thaliana] (TAIR:AT2G31660.1); similar to Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) (ISS) [Ostreococcus tauri] (GB:CAL58278.1); similar to OSIGBa0137O04.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66582.1); similar to OSJNBa0008A08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01598.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Exportin 1-like; (InterPro:IPR013598); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.162282200619445 1.83732099968621 0.0936001925423478 1 0.863055928056652 15.871431778286 0.162282200619445 0.0579684067014487
AT1G02500_at 11.092387520098 11.3031782671281 11.3143855041735 11.5291149175007 11.1608276864984 11.2902003708363 10.7623702202001 11.0801270547214 11.2160046152101 10.9938678283300 11.3148502741957 11.2563614226976 11.1956027281236 11.1121302883647 11.0822875420729 11.2093947173259 11.1432817470890 11.1583702037516 11.0971134520037 0.0791169532439368 0.0755773320406388 0.0783788332709256 0.0821262799150358 0.0766723213580592 0.0807397835930207 0.0755773320406388 0.0771455208759765 0.0813080485749778 0.0821743352986291 0.0808980300984921 0.0770601742746791 0.0789775190610288 0.0791766713116916 0.0755773320406388 0.0760605977263541 0.0772470291608726 0.0778347004383977 0.0797242654577568 1 1 + 519649 520169 519849.182 518251 520437 + gene protein_coding_gene FALSE TRUE AT1G02500.1|AT1G02500.2 SAM1 (S-adenosylmethionine synthetase 1); methionine adenosyltransferase encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity. Identical to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1) (SAM1) [Arabidopsis Thaliana] (GB:P23686;GB:Q941A8;GB:Q9FEE0); similar to MTO3 (S-adenosylmethionine synthase 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT3G17390.1); similar to MAT2/SAM-2 (S-adenosylmethionine synthetase 2) [Arabidopsis thaliana] (TAIR:AT4G01850.2); similar to MAT3 (METHIONINE ADENOSYLTRANSFERASE 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT2G36880.1); similar to S-adenosylmethionine synthetase (GB:AAA32868.1); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71235.1); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71233.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) 0.172911293910019 1.83712099319757 0.0936315224010656 1 0.862778119382135 22.3347556912948 0.172911293910019 0.0789721372471415
AT4G12990_at 3.4036076747897 3.49075782613917 3.8926419746279 3.78554692302535 3.84681776694046 3.73852976003211 4.37968859069664 3.96481461107189 3.31902176375874 4.7181866939926 3.50620922438986 3.80178562552684 4.03165287769449 4.10455929879837 3.46155138195842 4.24818842266671 4.33618878026938 3.4456372432781 4.61605257605902 0.254422365865428 0.251643118083639 0.264908496270295 0.248429932348514 0.245384384812335 0.260353221641224 0.254983291880242 0.262584456411956 0.276858126843788 0.254918236261544 0.245839961773789 0.257737316301367 0.258497826701613 0.27246392488736 0.246378221880323 0.250257176947871 0.258663516141469 0.248421978939025 0.245384384812335 4 4 - 7595045 7595283 7595157.545 7594941 7595460 - gene protein_coding_gene FALSE TRUE AT4G12990.1 unknown protein -0.172307570315955 -1.83680805313400 0.0936805619035663 1 0.862343475447509 7.85516328329518 -0.172307570315955 0.0779536273615835
AT2G30660_at 2.33078153630074 2.01219457168265 2.08804066880645 2.02475114610281 1.83023642750143 2.13167023412315 1.86643054644867 2.02603946120059 1.94781323047009 1.81507196543904 1.86936696347179 2.14138471655177 2.19910593015455 2.08815300809861 2.28629248841031 1.95580861522942 2.19597808490625 2.56578972375530 1.55902879262417 0.193615111231318 0.193273214126859 0.181540942292685 0.195193506990152 0.180930911157638 0.189864707709591 0.185903726970626 0.191464542166494 0.196640420581238 0.199458286742667 0.184662042790662 0.183824324912992 0.18526579123553 0.189566694867605 0.194174526810173 0.185468033414495 0.189901274604706 0.180930911157638 0.184631805844231 2 2|0 -|/ 13065617 13066627 13066251.444 13065327 13068750 - gene protein_coding_gene FALSE TRUE AT2G30660.1 3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to Os12g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066529.1); similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96998.2); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.174288351018222 1.83630734628414 0.0937590744222144 1 0.86164811568839 4.00712120943749 0.174288351018222 0.081508666401455
AT4G11480_at 0.799106141055776 0.436938185519639 0.643786262550593 1.06077543268213 0.951983003049097 1.01272674180579 0.926909168413732 0.722997274013824 1.23206716870363 0.435206504780006 0.878947041559273 0.739561144652336 1.06926701861895 1.22685151192253 1.19634558943583 1.20524580390525 1.20368638020951 0.844871763482385 0.932239130617223 0.189430478449617 0.191039863082365 0.189919926201975 0.197213687055872 0.195705368053147 0.190165138516378 0.191432188582434 0.191873636918885 0.203360597864505 0.195712414464676 0.189468144447764 0.189430478449617 0.189430478449617 0.189848013405963 0.192090444499287 0.189430478449617 0.195483625658917 0.192191192973607 0.189430478449617 4 4|0 +|/ 6973247 6973731 6973544.9 6971403 6973794 + gene protein_coding_gene FALSE TRUE AT4G11480.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.187461465730399 1.83620268719152 0.0937754929252008 1 0.861502781288415 1.77545342601476 0.187461465730399 0.102426647695835
AT3G50080_at 4.92404367442717 4.97483949639605 5.25724935816543 5.23363623639916 5.54847157860282 4.74586937917362 4.74577402521691 4.77390360739015 4.84262815406697 5.07829277472906 5.14077081211221 5.39974341778019 5.04393878920051 5.58131250481603 4.84810678261109 5.50485621667629 4.46815278881853 3.97588040060004 4.80096353515431 0.239778934960441 0.241925049476571 0.232899838984042 0.229968493219513 0.23508037216923 0.239333591872314 0.229968493219513 0.236510083258538 0.238572801332192 0.229968493219513 0.232572715767772 0.230918206389160 0.229968493219513 0.247425235234187 0.233175523365272 0.236353956131829 0.243755050626935 0.242236948071818 0.229968493219513 3 3 + 18584747 18585315 18585001.273 18583719 18585497 + gene protein_coding_gene FALSE TRUE AT3G50080.1 VFB2 (VIER F-BOX PROTEINE 2); ubiquitin-protein ligase similar to SKIP2 (SKP1 INTERACTING PARTNER 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G67250.1); similar to Avr9/Cf-9 rapidly elicited protein 189 [Nicotiana tabacum] (GB:AAP03878.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.214858414993884 1.83558559257681 0.0938723537687942 1 0.860645936855237 9.97679343716823 0.214858414993884 0.139316996788547
AT1G17580_at 7.12181571681526 7.46507742872557 6.9119819552144 7.25987090460884 7.47814036518028 7.56477465659387 7.30748038172197 6.89679676167585 7.22205934646037 7.45539152065746 7.1084390829068 6.85969048104824 6.9841230153594 6.68323633117678 6.60812436628382 7.05371616753578 7.11483802584234 6.9769828717519 7.57317920637982 0.200357828398553 0.188246070129575 0.181608376364955 0.18716080928628 0.180987070470078 0.203768668995929 0.180774661570574 0.184613019638586 0.207462604180458 0.194409644015873 0.187530471650337 0.179438367930437 0.194167163980322 0.191615249938252 0.199568499337723 0.185127558087146 0.197523128145064 0.184722426336194 0.191955980856830 1 0|1 /|+ 6049002 6049262 6049159.167 6039296 6049549 + gene protein_coding_gene FALSE TRUE AT1G17580.1 MYA1 (ARABIDOPSIS MYOSIN); motor/ protein binding Type VIII myosin gene similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to unconventional myosin heavy chain [Zea mays] (GB:AAD17931.2); similar to unconventional myosin [Helianthus annuus] (GB:AAB71529.1); similar to myosin XI [Nicotiana tabacum] (GB:BAD72949.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain Myosin S1 fragment, N-terminal; (InterPro:IPR008989); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.193666750131533 -1.83530217836652 0.0939168698951492 1 0.860252458929831 14.421002513269 -0.193666750131533 0.111485604828756
AT4G09630_at 5.01509184974164 5.45924571077638 4.73651847933965 5.12188899896763 5.55086918127708 5.15209709653037 5.963198176304 5.41397669272352 4.94039639346976 5.43599223563697 5.22704985012293 5.70441143771964 5.10357862639366 5.44354318787556 5.19709806892357 5.01552137666637 4.45364362786198 5.04431375930708 5.46992865858036 0.256824116377870 0.251418449196260 0.265508973776622 0.25445096527144 0.251418449196260 0.279000308446596 0.266184132481042 0.256054327856287 0.266817744554892 0.258269945600056 0.253510459883290 0.251418449196260 0.256406825892459 0.258487209789947 0.255430459430067 0.251418449196260 0.262430773118963 0.253311761219952 0.261045578526634 4 4|0 +|/ 6086325 6087502 6086908.5 6083710 6088131 + gene protein_coding_gene FALSE TRUE AT4G09630.1 similar to EMB2756 (EMBRYO DEFECTIVE 2756), hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Arabidopsis thaliana] (TAIR:AT1G34550.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91928.2); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) -0.227997719530607 -1.83461733178286 0.0940245190906562 1 0.859301773893075 10.5169861504181 -0.227997719530607 0.155407183476357
AT1G48670_at 0.918678643826934 0.923888101420031 1.16797661302316 1.54209988813207 1.0133910536463 1.27478722235911 1.25045396032206 1.04013011104668 0.843714688004475 1.12555602122708 1.15974878366017 1.16718142452326 0.76167581238346 1.21918723442611 1.34921412873024 1.08224957501763 1.65673591656237 1.35082423748754 1.27055380462402 0.188792903453675 0.194434560129375 0.194452839828016 0.195948225789987 0.189452525147028 0.190553886243547 0.197242014529699 0.191314778404741 0.205640172333172 0.193440763274139 0.188173099437521 0.193506453690070 0.200316811488904 0.188339100871988 0.186993957581928 0.192113361244748 0.195294329997475 0.191471750440003 0.187084946910097 1 1 - 18002625 18003019 18002803.818 18002614 18004868 - gene protein_coding_gene FALSE TRUE AT1G48670.1 auxin-responsive GH3 family protein similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT1G48660.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G51470.1); similar to Probable indole-3-acetic acid-amido synthetase GH3.11 (Auxin-responsive GH3-like protein 11) (OsGH3-11) (GB:P0C0M3); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.177343312308276 1.83437903912073 0.0940620021345893 1 0.85897102286964 2.29057252108073 0.177343312308276 0.0869691274128135
AT2G43430_at 7.97056976070478 8.20717024101015 8.09254571431616 8.48623945149578 8.83048603171204 8.32287744274433 7.97974260876968 8.1170222623147 7.76211968762562 7.41738989912136 7.81165807758485 7.18286822574072 8.03488583123061 7.92734848150248 6.98902987736481 7.82536534372107 7.06847357768392 7.26800925579386 7.25187112824218 0.168804794532894 0.165521707261054 0.17148470599293 0.165521707261054 0.169670263842229 0.172579590481338 0.167121540118206 0.166685545487636 0.175169151401191 0.171411053599336 0.165521707261054 0.165521707261054 0.165521707261054 0.169011877103457 0.170938642988336 0.166845693385874 0.183303749442324 0.171016475153419 0.170032793381883 2 2|0 -|/ 18042693 18043813 18043235.125 18042446 18045332 - gene protein_coding_gene FALSE TRUE AT2G43430.1|AT2G43430.2 GLX2-1 (GLYOXALASE 2-1); hydroxyacylglutathione hydrolase glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclear Identical to Hydroxyacylglutathione hydrolase 1, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLX2-1) [Arabidopsis Thaliana] (GB:O24495;GB:O22857;GB:O24494); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.2); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|Identical to Hydroxyacylglutathione hydrolase 1, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLX2-1) [Arabidopsis Thaliana] (GB:O24495;GB:O22857;GB:O24494); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.1); similar to putative mitochondrial glyoxalase II [Cicer arietinum] (GB:CAC10212.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.200369435349327 1.83425004936158 0.0940822977127338 1 0.858791993316803 15.7461225585455 0.200369435349327 0.12082719864169
AT3G53170_at 2.95350867959536 3.2342782375014 2.44430032578068 2.69164892787993 2.38653783533301 2.82228153199686 3.07780212840477 3.01456190322774 2.86354925044723 2.77392325458794 3.12663149952078 3.39621587894596 3.06131048143397 2.77357436919715 3.47092752896417 2.8182647714354 2.71291033261042 2.76414697614058 3.07116377384971 0.180368718058154 0.184913963835833 0.182814970234606 0.185148310743576 0.192761667121910 0.188683499892686 0.188799966019717 0.188428836533346 0.190535754285488 0.182555252216251 0.181305412854211 0.185905384866295 0.188289719810285 0.182518469890266 0.179780109190593 0.183617490746965 0.191164473158867 0.195003442429623 0.183484410128544 3 3 - 19715752 19716265 19716027.909 19715707 19717136 - gene protein_coding_gene FALSE TRUE AT3G53170.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G48730.1); similar to Os03g0115300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048751.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17033.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.185613305890969 -1.83408475573322 0.0941083112893254 1 0.858562585214931 5.78730319091964 -0.185613305890969 0.0999957663817906
AT2G01890_at 3.61819248749183 4.30336417459811 3.13342878778056 2.95270290913570 2.23654195633389 2.34938201399838 3.95581995120954 4.06158058106418 2.15330184093349 2.56277534543652 2.59868231147125 4.35009607973083 4.91230384325756 3.96439007503915 3.69453223932826 5.18016256003945 3.22132289910396 3.34673077178633 4.28202425210876 0.246639586249622 0.251248963205977 0.240236903453396 0.241962640500464 0.245410781329876 0.243542574318165 0.243918527503987 0.24579741837171 0.254684771934242 0.244522705561294 0.247992658348394 0.249669535406034 0.250687980375231 0.242359373660997 0.246321368682478 0.248374603597521 0.265289549275813 0.250220776272247 0.245545335046617 2 2|0 -|/ 397021 397825 397292.778 396767 399207 - gene protein_coding_gene FALSE TRUE AT2G01890.1|AT2G01890.2 PAP8 (PURPLE ACID PHOSPHATASE PRECURSOR); acid phosphatase/ protein serine/threonine phosphatase|PAP8 (PURPLE ACID PHOSPHATASE PRECURSOR); protein serine/threonine phosphatase Encodes a purple acid phosphatase (PAP) belonging to the low molecular weight plant PAP group. similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G14700.1); similar to purple acid phosphatase 1 [Solanum tuberosum] (GB:AAT37529.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.203782465234387 -1.83317685194949 0.0942513126861807 1 0.857302700064446 6.78032397951612 -0.203782465234387 0.125514183553254
AT2G34590_at 8.38759368219123 8.45304099969633 7.34941967676934 7.15882780663757 7.72728910554248 7.92327676053575 8.20547106424486 8.75040841602797 8.2269087647494 8.25969257157673 9.30865159234265 9.25325072878607 8.81734952582195 8.9107000720417 9.40657912212966 8.50802032382088 8.16105723864611 8.25816480993716 8.4066849185285 0.168329091044529 0.156625962652014 0.174634258242054 0.168597137619175 0.159314221246766 0.174104992082235 0.156625962652014 0.159826590401407 0.170086048805952 0.157264438823093 0.156625962652014 0.160126074817919 0.161206097450240 0.163878911451374 0.161836444477555 0.163210409227431 0.180047441108472 0.168604178542885 0.158070455629495 2 2 - 14576038 14576653 14576360.364 14575890 14578048 - gene protein_coding_gene FALSE TRUE AT2G34590.1 transketolase family protein similar to PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G30120.1); similar to Os12g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067285.1); similar to Pyruvate dehydrogenase E1 component beta subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97865.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) -0.189607805714791 -1.83255691363054 0.094349071587315 1 0.85644259407015 16.5572828197769 -0.189607805714791 0.106111792979512
AT1G70810_at 10.5913047393813 10.7369023597270 11.1460595769552 11.1037570068278 10.8488106305959 10.5171506993520 10.3338054155831 10.2834349945331 8.9427765113052 9.6737389586712 9.12924705358194 8.4848832002453 9.29041138320567 9.25135208495372 8.27795013371787 9.3510429137199 9.66583652388473 8.95833779186405 8.80273336250053 0.150997540881570 0.144061749896087 0.150033272977932 0.151929159746967 0.147996325249135 0.149950404653633 0.144345013705850 0.147066727627651 0.157714115746568 0.142531432875455 0.151815292245163 0.154502264631644 0.147545990081158 0.145944097174487 0.159575037686527 0.146035636512308 0.150001603978312 0.149368150980896 0.151426665443361 1 1 + 26707875 26708729 26708337.273 26707792 26708898 + gene protein_coding_gene FALSE TRUE AT1G70810.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70800.1); similar to C2 [Medicago truncatula] (GB:ABE81436.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.164482812973813 1.83233307638123 0.0943843915589288 1 0.856132075618095 19.7905943011056 0.164482812973813 0.0637075457839835
AT2G39725_at 3.80376033184041 4.16322063701076 3.59870374725726 4.14262341666385 4.2411641112833 3.61209952524507 3.31374122462188 3.07637266571706 3.04912388230991 3.22907369017365 3.48511936332224 3.49177811120667 3.20144105046851 3.39170997790599 3.08814553946552 3.29934940107155 3.33177778791898 3.25098788773935 3.20228642437389 0.222617094191384 0.229637095841449 0.219447093953715 0.231269412096867 0.226309523820039 0.230244237427886 0.219447093953715 0.223657134863911 0.233158316894975 0.225959316373821 0.220646426221356 0.219447093953715 0.228859440825751 0.223267991052976 0.219447093953715 0.220169619081903 0.230170937822412 0.227250307634224 0.224195318388480 2 2 + 16577151 16577384 16577270.273 16576508 16577627 + gene protein_coding_gene FALSE TRUE AT2G39725.1|AT2G39725.2 complex 1 family protein / LVR family protein similar to Os08g0278600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061438.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99750.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) 0.233375646458189 1.83230096374762 0.0943894597022412 1 0.856087528842286 6.98281069354153 0.233375646458189 0.162074391718326
AT1G52710_at 4.42875749816623 4.71846422458259 3.64064688303268 3.70339629458582 3.90195421769328 4.65503467416984 3.52669255704981 3.3586288240193 4.28547656218595 4.79005866093645 3.58661149308354 3.87677075108398 3.91922598934823 4.56938798788929 4.03580350236372 4.52008429215376 3.4381967121411 4.15226373845289 4.16711215554343 0.368838116487005 0.401333645737675 0.366618005823793 0.359657172211427 0.376215420712552 0.38606581047219 0.359657172211427 0.359657172211427 0.370875539798309 0.361380396566072 0.366796597297812 0.359657172211427 0.359657172211427 0.359657172211427 0.364330052021978 0.359657172211427 0.359657172211427 0.359657172211427 0.359657172211427 1 1 - 19642295 19643756 19642547 19641999 19643891 - gene protein_coding_gene FALSE TRUE AT1G52710.1 cytochrome c oxidase-related similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT3G15640.2); similar to Os06g0142700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056771.1); similar to cytochrome c oxidase subunit Vb [Pisum sativum] (GB:BAF30483.1); similar to cytochrome c oxidase subunit Vb [Pisum sativum] (GB:BAF30480.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) -0.217400246579059 -1.83161980137159 0.0944970220891166 1 0.855142706792583 8.20495132226403 -0.217400246579059 0.143044421322801
AT1G44900_at 1.77199922630618 2.14309709381777 1.59487355925674 1.80304435298074 1.19323977932378 0.674138991477645 2.26647012030708 2.77244685032530 1.41065854008732 2.10549479573088 2.25616883922942 2.65095949533041 1.77856287069890 1.96872457285807 2.93824802146409 1.57339180662998 1.61628512346491 2.10978216552104 1.36789270894990 0.196285702858688 0.190522683709067 0.195087428833272 0.197380002592744 0.193099639543394 0.193857902964346 0.193875066300745 0.199475717133556 0.190409632239623 0.190409632239623 0.195696427124775 0.197665300414522 0.195485388577392 0.194229120602217 0.200182334689219 0.190534898393658 0.192295997940411 0.192938373139494 0.197157625139501 1 1 + 16976028 16976832 16976451.455 16972701 16977030 + gene protein_coding_gene FALSE TRUE AT1G44900.1 ATP binding / DNA binding / DNA-dependent ATPase similar to DNA replication licensing factor, putative [Arabidopsis thaliana] (TAIR:AT2G16440.1); similar to minichromosomal maintenance factor [Triticum aestivum] (GB:AAS68103.1); similar to MCM protein-like protein [Nicotiana tabacum] (GB:BAC53939.1); similar to DNA replication licensing factor cdc19 (cell division control protein 19) [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_571963.1); contains InterPro domain MCM protein 2; (InterPro:IPR008045); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain MCM; (InterPro:IPR001208) -0.219339569142894 -1.83137285060089 0.0945360457707137 1 0.854800210085823 3.64717910180222 -0.219339569142894 0.145461353309783
AT4G37730_at 1.37710380271923 1.22577762732218 1.49444589064131 1.07508355766620 1.29246252179291 1.49638393976211 1.02884855420721 1.2493663082955 1.46854618204129 1.00633221517588 1.31190215637607 1.36427562708635 1.14819572504242 1.76710690650608 1.70549106542136 1.59348604947086 1.45632878253413 1.52361648732105 1.24973024575800 0.243399534193344 0.239580211100872 0.241229469996518 0.245681538024315 0.23929664818908 0.250043220469231 0.241812239413453 0.243240113812778 0.259586726749959 0.248905854272964 0.24082999954748 0.242943065535142 0.245201917323878 0.239103107060465 0.2452406438959 0.248067973014243 0.258318297351482 0.253226268967555 0.251044805975909 4 4 + 17724126 17724604 17724304.909 17723660 17724909 + gene protein_coding_gene FALSE TRUE AT4G37730.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G22850.1); similar to bZIP transcription factor bZIP35 [Glycine max] (GB:ABI34640.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.180792019987168 1.8311893910698 0.094565045970712 1 0.854545784058276 2.64260230744825 0.180792019987168 0.0930281742985203
AT1G30010_at 2.16507048681205 2.00041138345301 2.12980209642055 2.31097857652330 1.96933730243386 2.23988595009673 2.06869346744760 1.91368783915405 2.16399068604308 1.99397264912219 2.36660727038041 2.22372429635256 2.55329197817003 2.29458437568071 2.43707484555123 2.19467984185659 2.38653559133456 2.18508099710508 2.20848640658213 0.194272651409572 0.188639232775654 0.192539686202003 0.193788981989712 0.194339473158728 0.194005834953835 0.19716195390199 0.195225805901900 0.213479629481887 0.189096400359551 0.187743963493448 0.189956913086673 0.186450561554059 0.191102132683363 0.198328870052172 0.186450561554059 0.191959015147979 0.200030403907182 0.188729755108725 1 1 + 10514718 10515214 10514967.364 10513178 10516369 + gene protein_coding_gene FALSE TRUE AT1G30010.1 intron maturase, type II family protein similar to intron maturase, type II family protein [Arabidopsis thaliana] (TAIR:AT5G46920.1); similar to intron maturase, type II family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97559.1); similar to Os12g0407300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066633.1); similar to Os10g0567500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065434.1); contains InterPro domain RNA-directed DNA polymerase (Reverse transcriptase); (InterPro:IPR000477); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) 0.166791336395015 1.83118116022861 0.0945663472441291 1 0.854534369622401 4.32590704452749 0.166791336395015 0.0686049569885814
AT4G33580_at 5.67930308723225 5.89055435765259 5.3441091284567 5.47129475430578 5.87409784261627 5.67173000265853 6.79920290362174 6.81129654947034 6.39853978759346 6.25943165635029 6.84556964274228 6.99769202722121 6.7730488546225 6.55565740053403 6.8222824267148 6.60304021101238 6.35252313987252 6.6273779413027 6.28243734791969 0.142291473847424 0.139094683016936 0.151810801093768 0.157941689296965 0.143343922906266 0.139149474824915 0.138013409844617 0.140984293028295 0.152185423812495 0.145804829585690 0.137107188856456 0.140088607833258 0.137537732764194 0.144254207942307 0.139666083339518 0.136179304753658 0.147018810243746 0.143529358458685 0.136633952535531 4 4|0 +|/ 16138363 16141227 16139977.467 16138361 16141626 + gene protein_coding_gene FALSE TRUE AT4G33580.1|AT4G33580.2 carbonic anhydrase family protein / carbonate dehydratase family protein|carbonate dehydratase/ zinc ion binding similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); similar to carbonic anhydrase 2 [Flaveria pringlei] (GB:ABC41657.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.160550967134961 -1.83108142392084 0.0945821165819261 1 0.854396058436629 12.4480078546471 -0.160550967134961 0.0552427464684494
AT4G38750_at 7.06917315642613 7.22610907767601 6.48387026719505 6.66356169391198 7.18847577514928 6.98053449796248 7.53722481920577 7.33879901720666 6.73725048100621 6.84514308074389 6.88791961840528 7.3182301918543 6.78167807199412 7.17778941080012 6.7388999655072 7.18079813745355 6.86467829409275 7.11487198824465 7.03929760095286 0.204920138700814 0.197279318487103 0.204929359764178 0.199356691115911 0.199852065117531 0.223789512306791 0.202424114889351 0.21386921451949 0.219876136937567 0.206076682385879 0.199845856610066 0.202199266255058 0.202310053753765 0.211286046872063 0.206721266464421 0.197279318487103 0.214512220363027 0.204369372222607 0.199936248852714 4 4|0 -|/ 18085038 18085834 18085526.1 18084902 18090840 - gene protein_coding_gene FALSE TRUE AT4G38750.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM46049.1) -0.164752401757134 -1.83033359318472 0.0947004329376773 1 0.853359106702068 14.0019711701058 -0.164752401757134 0.0646424069383868
AT2G16970_at 1.79256432429903 1.78434308760384 1.59520516369786 2.14657569188407 1.76933139182526 1.89331825694010 2.26190173934473 2.24103664076945 2.08656872941088 1.92012779585516 1.77626012357394 1.96921501242647 1.82473606856338 1.83471989177894 2.10386078735979 1.71630908883933 2.03099681162123 1.53873189012298 2.13778543492962 0.25111737995213 0.247132102073341 0.249223346464071 0.247918983927359 0.249305270370566 0.252078607818929 0.245202218601272 0.246415533467564 0.260113535786499 0.247322658147572 0.25693275994482 0.247770254279595 0.250638761386393 0.245202218601272 0.245202218601272 0.249157527007698 0.247996338119623 0.256288143132005 0.249852545569049 2 2|0 +|/ 7380501 7382545 7381870.167 7376631 7382610 + gene protein_coding_gene FALSE TRUE AT2G16970.1 MEE15 (maternal effect embryo arrest 15); tetracycline transporter similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16980.2); similar to Major Facilitator Superfamily, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX94836.1); contains InterPro domain Tetracycline resistance protein; (InterPro:IPR001958); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.183830383015115 -1.83029097539705 0.0947071796882382 1 0.853300018522085 3.88429171838770 -0.183830383015115 0.0978769309377964
AT4G10850_at 1.11109825072276 1.50255219924639 1.15191602821606 1.65000140023473 0.803530098658185 1.32304440407129 1.12960323213127 1.3643008794556 1.78171126133492 1.84823080953952 1.26785312644641 1.36671654461578 1.8877710193839 1.44902934079851 1.31735919350912 1.58739209802876 1.65619962807758 1.65167159324905 2.12979153241029 0.187602336707221 0.191258636114831 0.190216047347639 0.190346230501567 0.191235337576477 0.196676510259555 0.199036488473348 0.190105397548643 0.189173019992658 0.187602336707221 0.188422574523078 0.189745710712192 0.188587246978295 0.189051071213067 0.193043473723371 0.18765987742364 0.191979776596148 0.199082829380236 0.192028958550199 4 4|0 +|/ 6675739 6676673 6676052.1 6674994 6676976 + gene protein_coding_gene FALSE TRUE AT4G10850.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT1G66770.1); similar to seven-transmembrane-domain protein 1 [Solanum lycopersicum] (GB:CAE47557.1); similar to Os02g0301100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046621.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) -0.220838895337607 -1.83005520973077 0.0947445112952222 1 0.85297314914639 2.97596094614631 -0.220838895337607 0.147483123191043
AT3G62810_at 7.29798712533489 7.4067405682409 6.58592784807217 6.7779307751406 6.14726452438672 6.75845979467176 6.40905090466367 6.62093350435656 6.30016312975476 5.94520521595046 6.12993983881547 6.17560210849358 6.01644963731269 6.05331850199042 6.37516415012207 5.9133445570516 5.31713149413642 6.08302190171825 5.86757114843422 0.187576304127931 0.191341813853207 0.193439796365894 0.188501441309258 0.186068643216966 0.197169491862607 0.189003868872260 0.188515501979767 0.19501191079453 0.196628949598257 0.185676858943914 0.192604813158131 0.186164333400934 0.191127987064707 0.190190012198201 0.187973065053089 0.198962217418067 0.185676858943914 0.194097433123288 3 3 + 23238740 23239097 23238893.182 23238657 23239373 + gene protein_coding_gene FALSE TRUE AT3G62810.1 complex 1 family protein / LVR family protein similar to Complex 1 LYR protein [Medicago truncatula] (GB:ABE84987.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) -0.197966132211306 -1.82949664561145 0.0948330091437508 1 0.852198828349334 12.7733583914842 -0.197966132211306 0.118279581317039
AT3G02330_at 1.3054745813551 1.39286831075868 1.13040486461082 0.944255831945498 0.969417304970841 1.37821268191200 1.51421880409344 1.19131390443595 1.37455036088494 1.34055493560826 1.09230300969815 0.608442704916163 1.49190929527577 1.00862369503962 1.47813164478731 1.06827005429395 1.55901597347847 0.889062401892754 1.09554905053977 0.219302367913678 0.212592888903183 0.216530256366693 0.235380925074132 0.217610334420442 0.224057129507177 0.215029248382687 0.210661341492644 0.214670073384748 0.225471104434940 0.219249769756412 0.214429117724330 0.219901964597761 0.209670472472553 0.229762473758714 0.208932564414619 0.208932564414619 0.216658864498818 0.220051388904301 3 3 - 473921 474453 474250.909 473888 476599 - gene protein_coding_gene FALSE TRUE AT3G02330.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G39530.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96900.1); similar to Os10g0558600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065364.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.183072248777942 -1.82895559909824 0.094918803567657 1 0.851448901208518 2.43811476706051 -0.183072248777942 0.0969214827787037
AT4G21240_at 1.22145433163495 1.09354255497315 1.63077724084662 1.55390446850404 0.886939853160029 1.39896993089191 1.11532995443029 1.17677124083750 1.27712026909987 1.07438801186893 1.46019601192484 0.902723631247246 1.42353081188431 1.57076416707057 1.60196335315766 1.07282917346752 1.78414143900542 0.9992415192044 1.26893402840645 0.204912224667239 0.204934026409736 0.204058470731691 0.206771368601619 0.219869716502290 0.209990054784611 0.211378043694142 0.207971150518935 0.207919516663310 0.215428944568762 0.203577254997776 0.202172007608808 0.207593218133999 0.202073924934312 0.211342305386730 0.202073924934312 0.217441566220209 0.209472618023320 0.209701977070226 4 4 + 11323075 11323598 11323282.364 11322421 11323674 + gene protein_coding_gene FALSE TRUE AT4G21240.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47790.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE89134.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.180491506563419 1.82892627663488 0.0949234552932964 1 0.851408261366917 2.53908013015748 0.180491506563419 0.0929064521105817
AT2G37800_at 1.57177620354681 1.08969313841727 1.76589322822717 1.38743472955289 1.61557056872664 1.89201735066668 1.70738173407344 1.85536984606446 1.40586378547903 1.10873009360178 1.76230428883728 1.54252283946968 2.05136861933191 1.35447584937564 1.44613951414305 1.20566078896672 1.35179077324586 1.23805071002528 1.1039005562832 0.186146275970793 0.188639530666041 0.187841007819955 0.188489182705268 0.188367383532760 0.186052488047301 0.186059734539380 0.185462505529997 0.195217387743926 0.188871970117203 0.188814002331835 0.185710417178903 0.188469745834882 0.186089787758032 0.185462505529997 0.191283484616022 0.193408992458525 0.186843023953039 0.196335847708497 2 2 - 15848125 15848668 15848445.818 15848117 15850688 - gene protein_coding_gene FALSE TRUE AT2G37800.1 DC1 domain-containing protein similar to CHP-rich zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G37810.1); similar to Hypothetical protein [Oryza sativa] (GB:AAK55769.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) 0.198524049952137 1.82880545218509 0.0949426251235425 1 0.851240806523653 2.96074409226563 0.198524049952137 0.119138832120939
AT2G23690_at 3.58737515458998 3.19115046455817 3.30905999408388 3.46422128169409 2.74355135033789 3.64428446567020 3.12146194052531 3.52027610158635 3.88229087269779 3.47685177869944 5.48938413941774 4.54387395726262 4.23137978534905 4.75826412719668 4.16751644209575 4.19285838047418 3.66779945688819 4.75103992034732 4.35030286750002 0.306150586831452 0.306435744665214 0.302363710721865 0.311027959738022 0.308730059417242 0.302363710721865 0.302363710721865 0.302363710721865 0.30833744854796 0.305115128594872 0.31359274092688 0.302766427556978 0.31732830736823 0.319174901061547 0.302363710721865 0.309243676592239 0.312515899414306 0.302363710721865 0.302363710721865 2 2|0 +|/ 10079658 10082381 10080092.857 10079357 10083049 + gene protein_coding_gene FALSE TRUE AT2G23690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37240.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAB41200.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83793.1) 0.253664688730711 1.82864630309932 0.0949678808839138 1 0.851020244432393 7.51187911034475 0.253664688730711 0.185696759195348
AT1G73100_at 5.49121542176789 5.33085189360648 5.24156933810385 5.53834231087976 5.73572605859354 5.346880362182 4.92031268791282 5.2217433956201 4.7185184582229 4.92474342262961 4.77787520657055 5.24486467165345 5.34228444012159 5.0343913467875 4.71240218695721 5.42118794807283 4.94595131424476 4.7551559326422 4.99510103246687 0.236366417786522 0.225292775675886 0.233430865555834 0.225567480370874 0.229970214802028 0.236548807414072 0.228125908963825 0.244544539839993 0.255598876222902 0.230112963848486 0.221704621033799 0.221704621033799 0.227561608857477 0.229947649345892 0.222124895760739 0.222002469408344 0.239899610511037 0.236537073095564 0.221704621033799 1 1 + 27497041 27497606 27497321.455 27494845 27497843 + gene protein_coding_gene FALSE TRUE AT1G73100.1 SUVH3 (SU(VAR)3-9 HOMOLOG 3) Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and this subfamily of the SET proteins have an additional conserved RING finger motif called YDG domain. Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3) (Protein SET DOMAIN GROUP 19) (SUVH3) [Arabidopsis Thaliana] (GB:Q9C5P4;GB:Q9SSL7); similar to SUVH1 (SU(VAR)3-9 HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT5G04940.2); similar to SET-domain-containing protein [Nicotiana tabacum] (GB:CAC67503.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) 0.187204247077214 1.82834480353737 0.0950157434261842 1 0.85060242676004 10.3076894012438 0.187204247077214 0.103232888205265
AT2G45050_at 2.03515514008853 2.21534629093989 1.32204330731725 1.55861952388650 1.72271972898422 1.59121653695565 1.58226148614501 2.24046866900347 2.55664555789901 1.80220185117853 2.25697956878805 1.85498178177644 2.41431893048336 2.24741840719327 2.08062902713292 1.92440440765104 2.25848717367007 2.38394376154921 1.99151074293084 0.217269942224941 0.220843862632879 0.224485885576325 0.223137443000234 0.231811664446317 0.221411747021855 0.226521036119610 0.23498361626077 0.222411082570362 0.231753473188224 0.219867835397334 0.217269942224941 0.224431273126439 0.220049540760190 0.227394210757388 0.222888220584514 0.227988517321954 0.227482142623916 0.227222494648308 2 0|2 /|+ 18590351 18590815 18590570.3 18589947 18591158 + gene protein_coding_gene FALSE TRUE AT2G45050.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 2 (AtGATA-2) (GATA2) [Arabidopsis Thaliana] (GB:O49741); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT3G60530.1); similar to AG-motif binding protein-3 [Nicotiana tabacum] (GB:BAC98493.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -0.204399395323617 -1.82822948321197 0.0950340561592203 1 0.850442624874142 3.93069455189006 -0.204399395323617 0.127046987647252
AT3G06260_at 1.40996254798871 1.72191883781364 1.79621894978515 1.62983653845460 1.91757811179426 1.44417427032794 1.66328223931843 1.69463655771219 2.25455881518787 2.12421850358735 1.57246858587701 1.87552946408661 1.75788110103428 1.55884570625511 1.69873015265437 1.60151698625051 2.08473562396401 1.61168779922206 2.12450429903003 0.190272307419380 0.190685863421836 0.194358379761199 0.192523246690169 0.19617953322577 0.192769680879806 0.195708226024068 0.195191665764547 0.194547286836136 0.200559616895403 0.202432343540862 0.190825536419886 0.197430711269782 0.191637114340473 0.192606849572847 0.193953844960626 0.191789501260957 0.198955253882245 0.200619918151055 3 3 - 1893838 1894382 1894112.364 1893479 1894865 - gene protein_coding_gene FALSE TRUE AT3G06260.1 GATL4 (Galacturonosyltransferase-like 4); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL3 (Galacturonosyltransferase-like 3), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G13250.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.186542094984090 -1.82741098861958 0.0951641248574303 1 0.849308560048994 3.60366848999257 -0.186542094984090 0.102394285239944
AT1G67700_at 11.188819442753 11.1288145658325 10.7226423323108 10.6531004545184 11.3241663463479 11.0205935415662 11.6092836506822 11.5570577795131 11.5664210823452 11.5257867515881 11.8149756537373 11.8120587990089 11.5888049073533 11.7121160478989 11.8993671286923 11.6636161418716 11.2083421566758 11.6173803149271 11.541204136007 0.0704111729450777 0.0665533808771892 0.0672031214423814 0.0671035215945014 0.0675044796645428 0.0675335368558971 0.0686262080880991 0.0657942141549861 0.0688605702429692 0.068177837587451 0.0658159707147665 0.0657886605639633 0.0685763441940377 0.0680451206326268 0.066100041703732 0.0657886605639633 0.0770008254928157 0.0659595093227607 0.0678353577763662 1 1|0 +|/ 25378083 25379316 25378723.9 25377893 25379696 + gene protein_coding_gene FALSE TRUE AT1G67700.1|AT1G67700.2 similar to At1g67700/F12A21_30 [Medicago truncatula] (GB:ABE84614.1); contains domain OLIGOPEPTIDASE (PTHR11804:SF2); contains domain PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED (PTHR11804) -0.160378101942759 -1.82725517490948 0.0951889039649585 1 0.849092700439375 22.7550864143992 -0.160378101942759 0.0556258765286924
AT4G11490_at 1.17142199561974 1.0989334285598 0.928020798400047 1.48409226556976 0.520126128908445 1.11184000028530 0.736494954099739 0.850733697383139 1.64809398542107 1.53469382067307 1.10740802120693 1.28466908589810 1.21755173200973 1.35829930177506 1.14819643095623 1.34770501518927 0.819317498727069 1.05334658591408 1.75640908881312 0.195321134407295 0.195321134407295 0.205331822027882 0.201019066888803 0.195700882380814 0.199589579604737 0.201139305031448 0.203461134866346 0.198639473550217 0.201763237012673 0.195408435069960 0.198120321488581 0.199853966195075 0.195321134407295 0.197385754958631 0.203946933032308 0.20267106020776 0.210515778294634 0.198741794723951 4 4|0 +|/ 6980754 6981519 6981209.8 6978843 6981543 + gene protein_coding_gene FALSE TRUE AT4G11490.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.216356738317123 -1.82682774548512 0.095256908482942 1 0.848500598639267 2.39443824556757 -0.216356738317123 0.142457298495283
AT4G30550_at 8.0360836374683 8.41037670004746 8.2914402869479 8.64992172540735 9.29918360611341 8.68150028896994 8.58435004497265 8.50714958851603 8.49575713260564 8.04371024188504 8.61287847928973 7.98743581613949 8.52362003884551 8.3705754804082 7.82738369085898 8.18821243595022 8.03332265278748 8.16872347124452 7.85383302143074 0.172789748635635 0.165059726704294 0.174967340383320 0.169553828316724 0.170327680583681 0.178376196029311 0.173253870371664 0.163617229019141 0.163962711474818 0.171884174987517 0.165228496340176 0.169411510949002 0.167760304206102 0.182365466149377 0.177555741814463 0.162330120962173 0.171576796419389 0.170714967794081 0.166281173868405 4 4|0 +|/ 14925774 14926657 14926165.5 14925416 14926867 + gene protein_coding_gene FALSE TRUE AT4G30550.1 glutamine amidotransferase class-I domain-containing protein similar to defense-related protein, putative [Arabidopsis thaliana] (TAIR:AT2G23970.1); similar to defense-related protein [Brassica carinata] (GB:AAK50344.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Carbamoyl-phosphate synthase, GATase region; (InterPro:IPR001317); contains InterPro domain Homoserine O-succinyltransferase; (InterPro:IPR005697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.214470180162627 1.82640983057525 0.0953234421455622 1 0.84792174217671 16.7300603048875 0.214470180162627 0.140173938965939
AT4G29420_at 2.98986266894593 3.38472495318627 3.05521127155908 3.69636627169565 4.54276705095218 3.91360808602069 3.26292884890782 3.52819165978564 3.3519768465012 3.34962440709036 3.06409151670954 3.65785171607793 3.35115699234009 3.32020525228056 2.84561590646589 3.61814881926546 3.26442202528366 3.27604726876085 3.26141286248331 0.226997835748053 0.220939926218888 0.229844755945493 0.235126441374822 0.227921009979058 0.233508379565587 0.226159852899663 0.229382845669508 0.220941414454140 0.234036706425193 0.225268910945519 0.223036417683222 0.224859315382309 0.229865594018464 0.223546287080687 0.220798524968169 0.236694436557676 0.220798524968169 0.22276515265019 4 4 - 14470879 14471283 14471112.455 14470465 14472238 - gene protein_coding_gene FALSE TRUE AT4G29420.1 F-box family protein similar to Os01g0193500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042281.1); contains domain no description (G3D.3.80.10.10); contains domain F-box domain (SSF81383); contains domain L domain-like (SSF52058) 0.244624434570096 1.82633193822196 0.0953358476011926 1 0.847813860142816 6.8570561726348 0.244624434570096 0.17590402787426
AT3G18850_at 2.65959382942764 3.20296049199897 1.64736439464305 1.86760533712207 2.20398651281388 1.96986913148498 2.98103198537597 3.11191373325865 2.48457383735804 3.79161864357082 4.55623534436434 5.41218538469866 3.35555563384146 3.83594959440240 5.31079726235508 3.40453968671112 2.76183921773530 3.74389341810999 3.82319497372184 0.24242969801108 0.230047318896289 0.236553252342865 0.233079370749681 0.234001851069024 0.235752227876099 0.228626181449089 0.234271188158696 0.246032686388564 0.234866148244511 0.244738849305177 0.236584569413298 0.228626181449089 0.233895551781853 0.246959566780987 0.228626181449089 0.230473225898067 0.234765040540578 0.229901708349650 3 0|3 /|- 6499566 6500147 6499799.667 6499421 6501365 - gene protein_coding_gene FALSE TRUE AT3G18850.1|AT3G18850.2|AT3G18850.3|AT3G18850.4|AT3G18850.5 LPAT5; acyltransferase|LPAT5 Identical to Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 5) (LPAT5) [Arabidopsis Thaliana] (GB:Q9LHN4); similar to LPAT4, acyltransferase [Arabidopsis thaliana] (TAIR:AT1G75020.2); similar to putative acyl-CoA:1-acylglycerol-3-phosphate acyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD53283.1); similar to Os01g0782500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044448.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.192753354052794 -1.82603931217932 0.0953824656048523 1 0.847408588885076 6.16258414084608 -0.192753354052794 0.111575896761366
AT3G07780_at 8.10018911354183 8.01360512434262 8.29295561486463 8.03262181252606 8.45867741780984 7.9377397590568 6.97800700194861 6.88710884147862 7.56110829019754 7.31106144921888 7.30052295892033 7.3714639793948 7.34271092683788 7.12340351013657 7.09033645692965 7.31311070178819 7.25404846211402 7.03216625182324 7.74931019869552 0.176450811733833 0.193786443693463 0.184413803105821 0.183886212837725 0.189494569050612 0.18476850406656 0.179833041375220 0.18938096762852 0.180057925048874 0.176479357959761 0.175213111221587 0.173837973796625 0.181325371677190 0.184121479235757 0.191541583908825 0.172453285046209 0.183338501765057 0.183643406787834 0.179601804355396 3 3 + 2486284 2486844 2486590.909 2484475 2487030 + gene protein_coding_gene FALSE TRUE AT3G07780.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G48160.2); similar to Os12g0514400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066881.1); similar to Potyvirus VPg interacting protein [Nicotiana benthamiana] (GB:AAP22954.1); similar to Potyvirus VPg interacting protein [Pisum sativum] (GB:AAP22955.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Arabidopsis thaliana 130.7kDa hypothetical protein; (InterPro:IPR004082) 0.186874112012759 1.82602496297922 0.0953847520991437 1 0.847388716832385 15.2220949450447 0.186874112012759 0.103095999087075
AT3G59480_at 1.5950445330917 2.03619825469201 1.62339628215024 1.75137524542252 1.53956483002576 1.54299641116607 1.78556839949824 2.08141275128755 1.76656944518238 2.20389254880863 1.76584849831760 1.62436228605608 2.10421650623107 1.53845062460172 1.69764161168519 2.01454886921149 1.88310934652152 1.95402261581597 1.80449643134792 0.215254392798947 0.203760378074008 0.20054540015411 0.198374501756919 0.199416946668126 0.203327806206581 0.198374501756919 0.207624453086138 0.199580974815670 0.206944797102138 0.203775237714352 0.20167867278918 0.203984298253135 0.208735631434428 0.201542321612551 0.203256959714685 0.205842129439937 0.201250403943595 0.200274151062530 3 0|3 /|+ 21994664 21995354 21994943.444 21993998 21995572 + gene protein_coding_gene FALSE TRUE AT3G59480.1 pfkB-type carbohydrate kinase family protein Identical to Probable fructokinase-4 (EC 2.7.1.4) [Arabidopsis Thaliana] (GB:Q9M1B9;GB:Q8LCW0); similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT2G31390.1); similar to putative fructokinase 2; S2 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ10000.1); similar to putative fructokinase 2; S1 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09999.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.181216944712894 -1.82566922968878 0.0954414529514298 1 0.846896089967738 3.61832518170912 -0.181216944712894 0.0945535712572965
AT1G69120_at 1.37441239609978 1.63072283830692 1.60130408451483 1.23713460459083 1.13002462479253 1.7156402678958 1.91917335991482 1.88370218474157 1.78297958190176 1.70950178806784 1.46993089749850 1.54872656904983 1.89493400540515 1.41904330032225 1.71666555047903 1.71703712492576 1.85404671402893 1.65736659241865 1.87025133991203 0.19346809355378 0.194702334000973 0.204544729100905 0.197175123663975 0.196196447197936 0.193278480593347 0.200125495117764 0.199906927287621 0.200788357331285 0.197497329997013 0.198301267840171 0.194842012831755 0.199314632216622 0.193278480593347 0.196566744238944 0.193278480593347 0.195746700535582 0.194471680336421 0.213491550366927 1 1|0 -|/ 25986248 25988189 25987124.556 25985993 25989976 - gene protein_coding_gene FALSE TRUE AT1G69120.1 AP1 (APETALA1); DNA binding / transcription factor Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY. Identical to Floral homeotic protein APETALA1 (Agamous-like MADS-box protein AGL7) (AP1) [Arabidopsis Thaliana] (GB:P35631;GB:Q8LA98;GB:Q9LQA8); similar to CAL (CAULIFLOWER), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G26310.1); similar to homeotic protein boi2AP1 [Brassica oleracea] (GB:AAB08876.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.2044177625059 -1.82554093293679 0.0954619099130606 1 0.846718433437987 3.28516250222041 -0.2044177625059 0.127464873572171
AT3G05810_at 3.47226527534663 4.10091208301491 3.4848160052773 3.53285910586566 3.32501862516357 3.57464755101188 3.62650006663486 4.21411561979766 2.63304241977726 2.88895709200804 2.73443301522626 2.77057534986430 2.27361726367215 2.96010626480348 3.51936924117808 3.20534514037233 3.20802698303805 2.87489593095269 3.54572544803140 0.210685333895613 0.213933787762467 0.210971678454664 0.205800770173388 0.207839008558343 0.210906586779703 0.211162519837667 0.217387008956368 0.205862387862451 0.208468606790689 0.205800770173388 0.205800770173388 0.205800770173388 0.207097875013571 0.206608550363195 0.205800770173388 0.217461705617466 0.205800770173388 0.207362541707331 3 3|0 -|/ 1731265 1732301 1731810.6 1730982 1732390 - gene protein_coding_gene FALSE TRUE AT3G05810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26800.1); similar to Os01g0299400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042813.1); similar to Unknown protein [Oryza sativa] (GB:AAL74273.1); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.226695888668032 -1.82501046850987 0.0955465351741618 1 0.84598394737781 6.64932735913605 -0.226695888668032 0.155278506954992
AT1G16705_at 0.80287661628397 0.682195886995792 0.636211934254595 0.693986311856851 0.540951826465305 0.943669329618414 0.639893029872908 0.843275218878943 0.966604452031494 1.10339638539202 0.844800848377107 0.702478306162964 0.984397427146922 0.61803994983081 0.573267044266371 0.488530271468008 0.689539374904305 0.931685415428175 1.04095125847760 0.222164775026517 0.215520816605391 0.218457356547759 0.222431641840319 0.221909925774151 0.215520816605391 0.221125258347107 0.21936386534577 0.226180005580473 0.226202524610050 0.216677075860741 0.215520816605391 0.227233153042854 0.215520816605391 0.220023883438138 0.216905310820135 0.217674334671459 0.227396440482817 0.227092819486294 1 0|1 /|+ 5712888 5713489 5713229.375 5712081 5713745 + gene protein_coding_gene FALSE TRUE AT1G16705.1|AT1G16705.2 p300/CBP acetyltransferase-related protein-related similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); contains domain Kix domain of CBP (creb binding protein) (SSF47040) -0.173123519864034 -1.82447299678933 0.095632348194485 1 0.84523986517974 1.60592070011091 -0.173123519864034 0.0814364099075735
AT1G62780_at 8.01781028133241 8.59835689248908 7.34167113447698 7.20168940737223 8.61851551276705 7.32094419502766 9.33632958392515 9.10044536531582 7.89551161012328 8.49679204767667 8.88572101384632 9.0611750563031 7.98594098439701 8.27868645658636 9.4224302760451 8.58363262135646 8.21874373291599 8.01580119019739 7.73330884085785 0.213660944129313 0.210926408189032 0.225924370411966 0.225814452768552 0.214678077335656 0.228170931552962 0.222047777263445 0.218017587007636 0.228874363712972 0.214119964385909 0.209048953222048 0.209048953222048 0.209729124825715 0.227572775670396 0.217377986283785 0.209048953222048 0.211852621211351 0.232186972981 0.210526801937739 1 1|0 -|/ 23253027 23254502 23253975.889 23252810 23254770 - gene protein_coding_gene FALSE TRUE AT1G62780.1 similar to B0616E02-H0507E05.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67829.1) -0.3139424423923 -1.82349714747248 0.0957883327613835 1 0.843889161385138 16.4911639212592 -0.3139424423923 0.25053880645782
AT1G43260_at 0.626211386155157 0.977534924582957 0.803015476503867 0.765024509827654 0.837712146069026 0.695630149430574 0.915822425635003 0.760222926171941 1.69292976094635 1.13749372272297 0.897201026802516 1.14441113561439 0.759807261045473 0.891014749397162 0.825655996420467 0.903440608844905 1.08882206085767 0.979717320468019 0.84830957901908 0.218042594406412 0.218042594406412 0.218042594406412 0.223306860790769 0.218042594406412 0.224329336159102 0.218042594406412 0.222303346506677 0.231630620081964 0.222988265125384 0.220717472967476 0.218764396595524 0.227552708801 0.223123681766052 0.220952862268342 0.220479096200124 0.229147813118311 0.218042594406412 0.218042594406412 1 1 + 16321210 16321648 16321449.364 16320693 16321674 + gene protein_coding_gene FALSE TRUE AT1G43260.1 similar to protein dimerization [Arabidopsis thaliana] (TAIR:AT5G31412.1); similar to hAT dimerisation domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68478.1); similar to hAT family dimerisation domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98840.1); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) -0.167293964738312 -1.82211817256222 0.0960091510627822 1 0.841981080885938 1.87889830512742 -0.167293964738312 0.0711989119172696
AT4G21310_at 2.06936347831927 2.13090999065630 2.25493523860404 1.91527366905653 1.95458970365669 1.82605127157093 2.0445625166098 2.31771432523825 1.80684793427773 1.79915558010836 2.46150855593939 2.83611073656362 1.88671494553850 2.07047449883248 2.60360145299174 2.31442020863304 1.94714488843291 2.24551355455234 1.79255930719291 0.233464759096013 0.232569726949864 0.232380810352106 0.228952586700676 0.225301894230605 0.228228982702050 0.230172304444609 0.227061863002843 0.230399506085672 0.22865293309341 0.226629485253666 0.231538601879875 0.228895223674301 0.236753517291992 0.225807532155245 0.22498142061325 0.232238659590719 0.226604099978533 0.233964153981706 4 4|0 -|/ 11339179 11339764 11339490.6 11339058 11340080 - gene protein_coding_gene FALSE TRUE AT4G21310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32280.1); similar to Os05g0433400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055637.1); similar to Os07g0545100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059913.1); similar to Os06g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056606.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.171620028837658 1.8210904748035 0.0961740207343231 1 0.840559520015603 4.11177854706990 0.171620028837658 0.0793587242502429
AT1G54840_at 1.55213012235037 1.67762644213588 1.69821539179829 1.74058976982676 1.40114498163814 1.54675366094441 2.01761803906262 1.50941398622977 2.15921624381183 1.93330192807959 1.93041596215887 1.81053106409985 1.82277269767434 1.79376396461938 1.55926378748274 1.93708187775072 1.64137718452647 2.22952977940075 2.23501652697094 0.201695101468324 0.214106131607725 0.209057870912274 0.211248644088752 0.199785202901846 0.203413260123395 0.206280662675405 0.208307085780389 0.206955692790776 0.209201887516141 0.200311031991474 0.199096646351038 0.201307464142384 0.199096646351038 0.202771469019559 0.20517846935 0.199096646351038 0.205791016027425 0.204181272951048 1 1 - 20456532 20457085 20456854.818 20456260 20457916 - gene protein_coding_gene FALSE TRUE AT1G54840.1|AT1G54840.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54850.1); similar to heat shock protein-like protein [Cucumis melo] (GB:AAO45755.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20870.1); similar to heat shock protein-like protein [Cucumis melo] (GB:AAO45755.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) -0.180553694816368 -1.82052656583096 0.096264596302278 1 0.839779660899575 3.61782168558241 -0.180553694816368 0.0943137059713826
AT4G26480_at 7.7184781750544 7.09154327066209 7.02264850144531 7.32281772328462 7.07315441072054 7.37718855530548 7.62648496427049 7.81516944221193 6.99838392741085 6.75639317576951 7.84078081530321 7.47880895840578 8.19779846809062 7.9643483688062 7.10035215506776 7.68588752707505 7.88726921527465 6.69495945219911 6.71311496931318 0.162971147345952 0.166707925674521 0.169531821960043 0.165673228531904 0.166113267659962 0.172494349605995 0.162826954642948 0.165011772490059 0.164602141918096 0.164287587810631 0.160345502460504 0.165058395678954 0.172787157627791 0.164164321819083 0.166756248815239 0.160345502460504 0.169029000667233 0.167116322441473 0.172772616779353 4 4|0 -|/ 13372921 13374147 13373277.3 13372893 13378398 - gene protein_coding_gene FALSE TRUE AT4G26480.1 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G56140.1); similar to putative KH domain protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13019.1); contains InterPro domain Nicotianamine synthase; (InterPro:IPR004298); contains InterPro domain KH; (InterPro:IPR004087) 0.209839131917942 1.81989637275504 0.09636591061063 1 0.838908274050805 14.5953887857988 0.209839131917942 0.135291511919318
AT2G36570_at 1.58731407751462 1.84121803409744 1.41853866079851 1.03045124341056 1.57079694081362 1.36878950136786 2.16920556559436 1.88389549813455 2.17583324875182 2.48921240547917 3.28840053286401 4.63850379795658 2.38286821199872 3.78723066012368 4.29541182537379 3.01218346262836 1.99657376615647 3.66586397243997 2.80847293197157 0.218960585544248 0.209953467744937 0.218527990204210 0.217457180818844 0.213823880241522 0.215204090409471 0.215756598296134 0.207937855196259 0.218461812919504 0.210892809517385 0.209919370482045 0.224923468797860 0.211396333078862 0.209557339737906 0.216909458139753 0.213504855043339 0.219906088493433 0.212947443569392 0.216491394938226 2 2 + 15344272 15344777 15344500 15342575 15345006 + gene protein_coding_gene FALSE TRUE AT2G36570.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G68400.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82081.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80124.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.184471229693789 1.81947481066402 0.0964337382397467 1 0.838325450061663 4.54605238559655 0.184471229693789 0.100504079560896
AT4G14940_at 2.10067431031944 2.1570413498026 2.16866660775221 1.82670537859075 1.58505096146644 1.94028883800249 1.81943992203212 1.96369633108336 2.90809366595257 2.89040209071836 2.56567894075308 2.59688843085785 2.35521952431419 2.54974966839223 2.91212583057491 2.4236558723971 2.70390336902243 2.64967498313964 2.65965213856064 0.188976227475645 0.188509727352885 0.185962908587023 0.19017089357026 0.192319830256966 0.186642098856145 0.189306473775551 0.194497047085519 0.190578272254996 0.185962908587023 0.190319173663798 0.193772759712266 0.187812167236909 0.191671475369418 0.190613719562427 0.185962908587023 0.196395366280094 0.185998468800971 0.189753147213344 4 4 + 8543597 8544237 8543918.364 8541875 8544562 + gene protein_coding_gene FALSE TRUE AT4G14940.1 ATAO1 (Arabidosis thaliana amine oxidase 1); copper ion binding atao1 gene of Arabidopsis thaliana encodes an extracellular copper amine oxidase expressed during early stages of vascular tissue development. similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31710.1); similar to diamine oxidase [Brassica juncea] (GB:AAL47166.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.177402793084415 -1.81945970960267 0.096436168747394 1 0.83830457355674 4.65219281696882 -0.177402793084415 0.0894407354044571
AT1G24540_at 2.45882864293063 2.89556193159578 3.00118343407123 3.15116099511386 2.29992791562523 2.91555920713071 2.38129068465021 2.49960193566715 2.65462895163554 2.71030203775588 2.92716580915152 2.72380381876346 1.92788814743483 2.82811363527 2.35715743369152 2.66716465534468 3.16836172073169 2.55778733085946 2.16250517895494 0.245381673771147 0.247122123710553 0.251094240988473 0.248313705643935 0.249862287525326 0.255746009337654 0.251202002564946 0.248766424540635 0.267231311464291 0.244761514183372 0.253287792626923 0.251104890525088 0.250781078444464 0.245023793426673 0.248318078475714 0.248052644109521 0.248377010765473 0.251304614876813 0.247383276823442 1 1 + 8700707 8701271 8700987.909 8699738 8701408 + gene protein_coding_gene FALSE TRUE AT1G24540.1 CYP86C1 (cytochrome P450, family 86, subfamily C, polypeptide 1); oxygen binding member of CYP86C similar to CYP86C2 (cytochrome P450, family 86, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26125.1); similar to cytochrome P450 [Brassica rapa subsp. pekinensis] (GB:AAK31592.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.209336009365712 1.81927199724561 0.096466385616815 1 0.838045077170753 5.27730219752544 0.209336009365712 0.134741551843517
AT2G46020_at 5.95459620854928 5.66349402055031 6.07231983791174 5.69423915852525 5.99474460826838 6.2801526691759 5.61227068207745 5.293172259637 5.16326038145476 5.27178059864325 5.30159014109443 5.03372693020692 5.22984740229314 5.1078311061188 5.23058539072019 5.54531446528314 5.27201802897372 4.98497972433738 5.19370600121325 0.158352662028079 0.157125785660318 0.160279714787710 0.162509330551071 0.158517579698727 0.164289811133554 0.161756512413012 0.157744980154617 0.165374105426958 0.158731781484088 0.157785350345657 0.156986428882440 0.156755830011077 0.154419116926697 0.158350269925528 0.156674910291749 0.162929376849421 0.156720988940592 0.157378407401932 2 2|0 +|/ 18933071 18938747 18936053.714 18930377 18939007 + gene protein_coding_gene FALSE TRUE AT2G46020.1|AT2G46020.2 ATBRM/CHR2 (ARABIDOPSIS THALIANA BRAHMA); ATP binding / DNA binding / helicase/ transcription regulator Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.|Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.3); similar to Os02g0114000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045665.1); similar to SNF2-related; HMG-I and HMG-Y, DNA-binding; Bromodomain; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE80161.1); similar to SNF2 family DNA-dependent ATPase (ISS) [Ostreococcus tauri] (GB:CAL54651.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020)|similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.3); similar to Os02g0114000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045665.1); similar to SNF2-related; HMG-I and HMG-Y, DNA-binding; Bromodomain; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE80161.1); similar to SNF2 family DNA-dependent ATPase (ISS) [Ostreococcus tauri] (GB:CAL54651.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.191567548645761 1.81905878837532 0.0965007172511897 1 0.837750349948591 11.0320331684530 0.191567548645761 0.110939654401713
AT3G50660_at 5.39857737898 6.45700997516171 3.84179002956225 4.12876265046442 5.21730658729784 5.33081481136866 5.85271291220524 5.75589373051702 5.87112058342903 6.51045797431167 7.99062976147668 8.31925312037133 7.37860766930031 7.15284636939166 7.33012050468702 7.22786801486354 5.55961635112313 6.45775821667782 6.98559796721833 0.268785726269019 0.267125110308370 0.286327879194328 0.299897525336638 0.274525935343745 0.282845243470045 0.261848216151476 0.26450172406183 0.282468489096683 0.272657909721557 0.268536691078442 0.273657938315128 0.272679649620965 0.282668926851933 0.271124122860799 0.261848216151476 0.288682997718104 0.267481700993546 0.277139290290472 3 3 - 18825246 18826882 18825856.545 18825121 18828225 - gene protein_coding_gene FALSE TRUE AT3G50660.1 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. Identical to Cytochrome P450 90B1 (EC 1.14.-.-) (Steroid 22-alpha-hydroxylase) (Dwarf4) (Dwarf protein 4) (CYP90B1) [Arabidopsis Thaliana] (GB:O64989;GB:Q9SCQ9); similar to CPD (CABBAGE 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G05690.1); similar to steroid 22-alpha-hydroxylase [Zinnia elegans] (GB:BAE16979.1); similar to steroid 22-alpha-hydroxylase [Gossypium hirsutum] (GB:ABJ90340.1); similar to cytochrome P450 [Solanum lycopersicum] (GB:BAF41219.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.257508993437965 -1.81854322022769 0.0965837819162721 1 0.837037729335014 12.0642650140977 -0.257508993437965 0.191527885955405
AT1G10460_at 3.08935078199351 2.69941769264677 3.04124626649285 2.94313037364563 2.68299061042865 3.10492345642033 2.70274106548172 2.923051286622 3.02670537121927 3.05513570029673 3.1874539118054 3.30153700497422 3.21200347045289 3.72844419901569 4.05917488826781 3.4668748829514 3.55091248553946 3.59862784209806 3.58980007834424 0.251287200794849 0.251733498575634 0.259033194238313 0.254236857959856 0.263705333117258 0.263263111337145 0.252184053386171 0.254039339856806 0.260202260331828 0.248042937562023 0.250744226321666 0.247101849543500 0.245670607064418 0.252526730940904 0.245729756256442 0.246844573258848 0.263613038232918 0.252206977791611 0.255156989934805 1 1 - 3439658 3439987 3439819 3439323 3440321 - gene protein_coding_gene FALSE TRUE AT1G10460.1 GLP7 (GERMIN-LIKE PROTEIN 7); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP7) Identical to Germin-like protein subfamily 1 member 1 precursor (GLP7) [Arabidopsis Thaliana] (GB:P92998;GB:Q9S7Q1); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT3G05950.1); similar to germin-like protein [Pinus radiata] (GB:AAC05146.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.189340336206117 1.81854182582794 0.096584006660467 1 0.837035802123807 6.26686092617886 0.189340336206117 0.107828257551547
AT3G44560_at 0.295257518680203 0.55854921460814 0.594731657641174 0.615149486727409 0.523472074081221 1.07788276251142 0.626641936013593 0.829211744704694 0.978826817811266 1.58893467179005 0.870235402547164 0.79878932522564 0.651960016797333 0.71577313569901 0.649307570106938 0.532447129071358 0.556190745603074 0.899480492968236 1.08923830766005 0.233917028952694 0.235921959356929 0.234141496384766 0.235314418069469 0.242785873334037 0.240547244206215 0.242474934006826 0.233917028952694 0.242000742632796 0.246851192000991 0.245339829948254 0.238162845779659 0.256274829684003 0.236950084324471 0.244274443436481 0.238530095192428 0.239751317139663 0.233917028952694 0.249480298198266 3 3 + 16164074 16165356 16164684.444 16162123 16165384 + gene protein_coding_gene FALSE TRUE AT3G44560.1 oxidoreductase, acting on the CH-CH group of donors similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT3G44550.1); similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT3G44540.1); similar to acyl CoA reductase [Simmondsia chinensis] (GB:AAD38039.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) -0.192166531714732 -1.81828000177241 0.0966262149520103 1 0.836673945825703 1.60424850420738 -0.192166531714732 0.111904315908447
AT4G22680_at 1.12189487592338 1.35860965445297 1.68131467534196 1.89684708582162 1.15104080556573 1.04959869790337 0.827241863774525 1.04530462470339 0.729754633671404 0.976324045978986 1.06824862646857 1.15822629443361 0.850715539395482 1.04844875353111 1.21854076327460 0.833382669073038 1.05696353009743 1.21495164981418 1.5363054826261 0.218377137583744 0.225473652270327 0.225302707124237 0.228165915787928 0.220161887354856 0.217265257747158 0.217250246924985 0.222352094104036 0.22604890121529 0.234280689472493 0.224196995065386 0.215910330032447 0.229117011902438 0.222524991310273 0.220785968498470 0.218515818065028 0.236504266426746 0.23218596847313 0.221634648006976 4 4 - 11922881 11923866 11923265 11922351 11924227 - gene protein_coding_gene FALSE TRUE AT4G22680.1 MYB85 (myb domain protein 85); DNA binding / transcription factor Encodes a putative transcription factor (MYB85). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-related transcription factor [Pimpinella brachycarpa] (GB:AAF22256.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.165913784473389 1.81772849934688 0.0967151769620325 1 0.83591182060648 2.33497125994578 0.165913784473389 0.0692932084552823
AT1G75400_at 5.21789087420427 5.38659164845622 4.75605836088076 5.17109409353371 5.25955453729669 5.36955773337390 5.05951350557883 5.23931063126814 3.98765778987274 4.52595137187537 4.18395985216765 3.86025429400655 4.34165938857415 3.90493860495932 3.94126364508284 3.94330593725991 4.22055487729321 4.02481388000777 4.43363764395322 0.247398187923874 0.249678358634582 0.258636695037039 0.243999800806437 0.26135545067596 0.258669994783384 0.244220867505493 0.245088476279455 0.257777617603078 0.254179384229028 0.249264136171439 0.245331329743787 0.246644074690567 0.253811815758295 0.256042113288656 0.252033275463755 0.244980017093051 0.253994856270101 0.255467623406614 1 1 + 28302462 28303100 28302736.455 28300580 28303347 + gene protein_coding_gene FALSE TRUE AT1G75400.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G19680.1); similar to Os01g0261100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042647.1); similar to putative C3H2C3 RING-finger protein [Triticum tur (GB:AAR32739.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.174957804460224 -1.8176615587056 0.0967259801388252 1 0.835819322572888 9.3666177956504 -0.174957804460224 0.085682564012664
AT4G35470_at 8.06821086474815 8.30798992782091 7.98539954932238 8.23206913164864 9.18653674804717 8.7702687023057 8.58784292109755 8.37791694178989 8.40198944134726 7.96897772844688 8.78104435270752 8.42777432494893 8.82822674826784 8.63788160811181 8.16078654413907 8.4290489629928 8.2164769941895 8.29296868243673 8.56397396668177 0.142741636957136 0.138637170673859 0.148379224298412 0.145583217015433 0.138377593814734 0.137311716635191 0.136488057338482 0.135054972408846 0.170366460005574 0.135895313701699 0.136925017653475 0.138954970957501 0.140840376543106 0.140882732058313 0.144738195016408 0.135086722516146 0.157500150389363 0.144782084489081 0.139250819230047 4 4|0 +|/ 16847902 16848396 16848105.4 16846306 16849155 + gene protein_coding_gene FALSE TRUE AT4G35470.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17440.1); similar to PSR9 [Brassica nigra] (GB:AAM10777.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) 0.184103675349574 1.81740738542278 0.0967670097755613 1 0.835468123235833 16.8312408847057 0.184103675349574 0.100265411757057
AT4G28280_at 0.9395169453392 0.954899078945164 1.24137045535158 1.11426673310621 1.73781343819645 1.31664074587956 1.57736619731109 1.11289177140955 1.97304141493172 1.60456812283266 2.17508841205955 1.73523094349246 1.76783642026894 1.90960967328461 1.81821682102783 2.09842215571466 2.05249894583241 1.84293859900902 1.66910603969729 0.234140616014352 0.235850243808971 0.240048959366238 0.235588755461381 0.232753206438073 0.23242797465182 0.234906139347288 0.239791671134977 0.236638166884194 0.234973903313266 0.240697949215322 0.231574495470709 0.231985133307745 0.237613961458859 0.234671443309435 0.233416044808793 0.247740990392607 0.26970359325498 0.237806182071384 4 4 + 14010803 14011450 14011198.9 14010691 14011564 + gene protein_coding_gene FALSE TRUE AT4G28280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20700.1); similar to GPI-anchored protein [Vigna radiata] (GB:BAA34247.1); similar to Os02g0721700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047962.1) 0.191214699365581 1.81701834285496 0.0968298412896143 1 0.83493061743372 3.08628839010406 0.191214699365581 0.110743478176325
AT2G03410_at 0.968529091996975 0.957111617764796 1.3682832475376 1.98762956100729 1.09444409170684 1.25771465936628 0.854578161022696 0.880001933689873 1.39732648257130 0.783473812039537 0.939784386790838 0.822608923869262 1.01881181229884 1.33186691404364 1.13540224970047 0.71009379482471 0.498764286256175 1.24865213959063 1.09671131907939 0.225916417362885 0.215772796240511 0.224391578132511 0.220405422415745 0.214244459092704 0.228945167647509 0.220017688922532 0.213945955678185 0.223005406135775 0.220131454489894 0.217574864154233 0.217155897967765 0.219178411953614 0.222285599608113 0.227079024646456 0.221939816916757 0.233479238518741 0.221101986523005 0.223482498164801 2 2 + 1034367 1034902 1034626 1033595 1036006 + gene protein_coding_gene FALSE TRUE AT2G03410.1 Mo25 family protein Identical to MO25-like protein At2g03410 [Arabidopsis Thaliana] (GB:Q9ZQ77;GB:Q67ZV9); similar to Mo25 family protein [Arabidopsis thaliana] (TAIR:AT5G47540.1); similar to MO25 protein -related [Brassica oleracea] (GB:ABD64974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.19135344048883 1.81697445747650 0.0968369312424291 1 0.834869988425971 2.19891251283749 0.19135344048883 0.110947322380637
AT1G04130_at 3.56242264532568 3.35016572073232 4.03156389199512 3.82922054256413 3.56686705578723 3.13673092985850 4.15364457704253 3.8944499165026 3.20267480944036 2.86904691791896 3.73595370644137 3.63926873355063 3.43592402565224 3.64505258032257 3.15310074900269 4.16799829715611 3.49799846725397 3.46541381107034 3.30311654711117 0.227253063416898 0.221192503349120 0.217323383801716 0.223764015319463 0.215187872797858 0.222982839102368 0.215857150896535 0.220288285312133 0.233433967072848 0.221867283218375 0.219339981470871 0.215187872797858 0.218313993393463 0.223867764536615 0.21838667224971 0.217256396630107 0.230548960462572 0.227319682112699 0.227177303773818 1 1|0 +|/ 1074224 1075328 1074731.889 1073426 1075567 + gene protein_coding_gene FALSE TRUE AT1G04130.1 binding similar to serine/threonine protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT1G56440.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87266.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.184283797483269 1.816744067237 0.0968741599731115 1 0.83455170899064 7.04940060387421 0.184283797483269 0.100639104960561
AT3G20950_at 1.36376503562948 1.99054776664451 1.69805190145737 1.96072239649873 1.44594001883939 1.57080523418856 1.41721092998887 1.69203786427142 2.15350450732874 2.27194520385234 1.41408540507183 1.28987301886323 2.12123512452024 1.59306082635889 1.57800794362353 1.45409928092775 1.99903144871817 1.98020826664098 1.99560073195659 0.181690338492898 0.183456387013451 0.182656350340715 0.180988720838378 0.186870123853333 0.183256904273301 0.178463766613093 0.178915777972149 0.181126719229940 0.183965592595768 0.182308477632394 0.182255653395964 0.186794260050292 0.181719179901477 0.180499562877221 0.178463766613093 0.183931948246182 0.179065104054213 0.183733718459407 3 3 + 7344151 7344725 7344482.545 7342681 7344750 + gene protein_coding_gene FALSE TRUE AT3G20950.1 CYP705A32 (cytochrome P450, family 705, subfamily A, polypeptide 32); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A30 (cytochrome P450, family 705, subfamily A, polypeptide 30), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20940.1); similar to CYP705A5 (cytochrome P450, family 705, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G47990.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.204330247379767 -1.81644118394656 0.0969231227135795 1 0.834133312063787 3.55191029946636 -0.204330247379767 0.128687239828595
AT2G41650_at 4.99606354267769 4.79326411123751 5.10610114378307 5.05922688290243 4.97695034852248 4.94118265078367 5.20572072200745 5.23384134162103 4.92220316884613 4.80398887377442 5.61521270782996 5.45351631427059 5.21534622358787 4.94214797937497 5.7403114546995 5.16679714875425 5.11162490446249 5.0349124582032 5.10369089397875 0.176083284031106 0.172206041787902 0.1782394557792 0.175886038954056 0.172696380072348 0.183674817994847 0.173929782991087 0.173591293520175 0.176222821674942 0.184967878218891 0.177000567447869 0.176502727421637 0.172914036199392 0.172615741576389 0.186576905501676 0.173178772043444 0.184095522018336 0.176767600798084 0.174069682974626 2 0|2 /|+ 17371146 17371273 17371213.889 17370985 17371512 + gene protein_coding_gene FALSE TRUE AT2G41650.1 unknown protein 0.152666081905039 1.81618572246423 0.0969644370089026 1 0.833780449340008 10.1531828234907 0.152666081905039 0.0368711645783391
AT1G16690_at 3.66803134797017 3.3737565320519 3.10883304044968 3.31477948725354 3.45997088328374 3.52137936062344 3.29415858332488 3.84706147078243 3.7302281034529 3.64972346272343 3.59677208158942 3.36619210940246 3.40754261744323 3.62930221678820 3.49948307469910 3.63730456142567 3.91643726034552 3.31563602947737 3.83775319404805 0.238526182241720 0.245843193695235 0.249993141731070 0.237391053207032 0.251253164256699 0.242194721874371 0.244758685981008 0.239691738618058 0.252499431649416 0.241103529677823 0.247364402791112 0.238206440970944 0.241528063058787 0.239449765111263 0.235880560801696 0.240685224753188 0.239461297465488 0.237447007109262 0.237052303575166 1 0|1 /|+ 5708822 5709337 5709086.667 5706165 5709586 + gene protein_coding_gene FALSE TRUE AT1G16690.1|AT1G16690.2 transcription factor-related similar to transcription factor-related [Arabidopsis thaliana] (TAIR:AT1G79020.1); similar to enhancer of polycomb-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28718.1) -0.193831233404083 -1.81591984379832 0.0970074530749102 1 0.83341322353536 7.09115567020306 -0.193831233404083 0.114593580052299
AT1G04645_at 1.15233681930238 0.719423201251412 1.08417207655664 1.27048305611545 1.35048117669390 1.28633057845236 1.07708669945988 0.891374667441617 0.837027076932049 1.20949259433631 0.9362743774885 0.849729977073167 0.985271423760137 1.34543369330579 1.11317081913976 1.25650710533234 1.29863749191871 1.04907814585972 1.07148864827466 0.177009133918725 0.171872203759494 0.177683255537059 0.174305127125919 0.171753608248793 0.180446814127898 0.170944458852569 0.172725676388062 0.176875089231741 0.184068300089355 0.176512642535446 0.178896193217871 0.176190404455409 0.171403394600309 0.175290849004432 0.173084815188761 0.181453229025645 0.183123006869110 0.174922599497254 1 1 - 1293879 1294208 1294039.091 1293769 1294262 - gene protein_coding_gene FALSE TRUE AT1G04645.1 self-incompatibility protein-related similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G16970.1); similar to S3 self-incompatibility protein [Papaver rhoeas] (GB:CAA60578.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) 0.176369073905598 1.81558596548571 0.0970614953450178 1 0.832952115563385 2.17576052728376 0.176369073905598 0.0883647412528498
AT4G09720_at 8.90691595871333 8.79896168986744 9.06254857628517 8.99776162407931 9.38173495139866 8.92923477703562 9.33627440213005 9.16950500111406 8.81929996870923 8.59198483136547 9.14110745589845 9.1130184317428 8.97368416791149 8.84770022066838 9.21482163000239 9.02196228633293 8.6844300336529 8.96957454129827 8.64533316827252 0.110671625110114 0.102718514995225 0.106548575667715 0.104402609441012 0.100498245276950 0.105914312637676 0.101642406887131 0.105107512511437 0.118516306702263 0.107281943860298 0.106081187176710 0.104784330202119 0.101220531442121 0.106857800583604 0.109285250990924 0.106812008847889 0.109159225070668 0.105366577467795 0.105932698308934 4 4|0 +|/ 6133120 6134932 6134181.333 6132914 6135180 + gene protein_coding_gene FALSE TRUE AT4G09720.1|AT4G09720.2 AtRABG3a; GTP binding similar to RAB7 (Ras-related protein 7), GTP binding [Arabidopsis thaliana] (TAIR:AT1G22740.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)|similar to RAB7 (Ras-related protein 7), GTP binding [Arabidopsis thaliana] (TAIR:AT1G22740.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.175076871199757 1.81536689526621 0.0970969694466952 1 0.832649587807972 17.9135304569384 0.175076871199757 0.0862534572661235
AT2G35075_at 1.77182427478775 1.78088022748763 2.40788718019744 2.09944342100111 2.05734040620127 1.87774488104555 1.98387677139652 2.01927008363131 1.90958679117038 2.18456641999971 2.05845265955357 2.10933733420294 2.40377297014708 2.07586073744918 2.31262279404358 2.36022927143004 1.81360737978232 2.35346538489106 2.15573835303589 0.17907559654402 0.178225485826754 0.193786900937036 0.180539717869075 0.177502934539698 0.179825239135263 0.179867958540931 0.188016820088035 0.181428206569816 0.187564062272580 0.178802638671726 0.178231578044927 0.179360628337918 0.182585658340070 0.178479396874049 0.178383147257267 0.187514942197752 0.182941004755931 0.192868832559685 2 2 + 14795034 14796053 14795610.727 14793761 14796102 + gene protein_coding_gene FALSE TRUE AT2G35075.1 similar to Phosphatidylinositol 3- and 4-kinase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98768.1); similar to Os03g0738100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051208.1); similar to putative phosphatidylinositol 3-kinase-related protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP44699.1) 0.162131255577173 1.81458156275383 0.0972242357622612 1 0.831565220747568 4.13439128297164 0.162131255577173 0.0620894479059025
AT2G46110_at 3.51630692053643 3.74128331570729 3.12711115920645 2.93772977973648 3.41798883317140 3.45603883058214 3.19372504647472 3.05227300279452 3.98179787373858 3.74394504184491 3.68669434469367 3.39487900705046 3.65014282209037 3.51662494159619 3.82510296169694 3.09964101112533 3.21801686955396 3.83232507566349 3.39312986764199 0.174735148133725 0.173572232282582 0.184656695067813 0.172574685453537 0.172767530963931 0.170730621355879 0.174748577130129 0.179436373820064 0.170730621355879 0.182985537534489 0.180051413867434 0.170730621355879 0.171827143926299 0.172501437105917 0.180017391198276 0.172744797073493 0.177866619671687 0.178317673071672 0.181997798424463 2 2|0 -|/ 18961957 18962627 18962348.222 18961643 18963603 - gene protein_coding_gene FALSE TRUE AT2G46110.1 KPHMT1/PANB1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1); 3-methyl-2-oxobutanoate hydroxymethyltransferase similar to PANB2, 3-methyl-2-oxobutanoate hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT3G61530.2); similar to Os01g0225400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042460.1); similar to putative 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAB32713.1); contains InterPro domain Ketopantoate hydroxymethyltransferase; (InterPro:IPR003700) -0.159771234631074 -1.81436691868971 0.0972590461657964 1 0.831268885914613 6.92241676448899 -0.159771234631074 0.0568547568081997
AT2G24290_at 5.87945276910063 5.38698446666125 4.86823597653019 4.59005912583256 6.30350238700046 5.72805108720069 5.75743306978373 5.6689462838234 4.84513647908 4.96502410385153 6.03805311254852 5.76961076912692 5.44195981689175 5.70793816100537 6.44249701808362 5.40789955127311 5.44097673812226 5.61617846888787 5.20735075230369 0.239249535635159 0.221228053396192 0.230246575423323 0.22649061925838 0.227230387042027 0.225299269478331 0.230293186140113 0.231484472380334 0.231538732427661 0.226927267481620 0.234901681490941 0.230494033128891 0.229865265410633 0.227257748637345 0.221892348802704 0.221228053396192 0.227938483302831 0.223952412892475 0.229366669425546 2 2 + 10345897 10346903 10346570.909 10345759 10347201 + gene protein_coding_gene FALSE TRUE AT2G24290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30996.1); similar to H0311C03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67554.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) 0.213280044773040 1.81425907917679 0.0972765395808343 1 0.83112001058762 10.8923213038604 0.213280044773040 0.140471093903114
AT1G52730_at 7.9005560096207 8.17744552617007 7.63194763245016 7.82333691244378 8.2070327865201 7.61185025666289 8.17275459231195 8.10481581872014 8.18120478358615 7.97708903380237 8.18517865055496 8.37493192530342 8.06286671379347 8.13256957779978 7.60385658952035 7.99100739894529 7.329695164067 7.75159674160679 7.99805898221124 0.199919723268245 0.193065756435449 0.207100124394256 0.197602486701698 0.203765034759700 0.200762677205458 0.196223090258604 0.195316027199670 0.187778249082210 0.190480891262273 0.212781997113036 0.188965200445237 0.187778249082210 0.19844787473735 0.203012549099760 0.193512438367556 0.202086740421176 0.200892446036394 0.193552926500717 1 1|0 +|/ 19647842 19648509 19648248.667 19646158 19648802 + gene protein_coding_gene FALSE TRUE AT1G52730.1|AT1G52730.2 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.196752922177092 -1.81401795260650 0.0973156648197353 1 0.830787144690732 15.9442576643952 -0.196752922177092 0.118912051591623
AT4G39235_at 3.77400180748864 3.54371913500682 3.38118201785069 3.38417272710046 3.74797377304403 3.5078652459678 3.81289803364451 4.45109213969697 3.65955841861133 4.16960881813419 3.83549265758433 4.55236654483412 4.01452385962708 3.85212595670535 3.98316929835003 4.29188465687587 3.98459196769804 3.9053514534369 4.36328734561712 0.185060394564218 0.185138347663864 0.189302070510650 0.186430537376671 0.188185043838978 0.192973951490421 0.198646390396828 0.19721885656223 0.196725350869166 0.185060394564218 0.191689373674864 0.185259809950212 0.189905705041844 0.188753198090534 0.195727610482085 0.185801378455005 0.194468060550990 0.185060394564218 0.192230823680927 4 4 + 18268510 18268996 18268750.364 18268043 18269206 + gene protein_coding_gene FALSE TRUE AT4G39235.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05570.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05323.1); similar to Os03g0724500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051122.1) -0.200921283016868 -1.81396068017592 0.097324959963058 1 0.830708085520959 7.75865802339658 -0.200921283016868 0.124549219130839
AT4G35335_at 5.2413925536411 5.31365647613834 4.89639055757381 4.33752244408604 5.64190046497265 5.31328253497407 5.77474683507905 5.54513886656005 3.83043432399526 4.66502023960986 5.43889288493633 5.31897016645178 5.1519414202106 4.94761687329566 5.48275179726664 4.78170726906519 4.78149151408921 4.40128547645934 4.17062316265463 0.207329251283394 0.203069607242367 0.204003323833233 0.206828435143613 0.202688705200474 0.203371410922614 0.204686784006585 0.210608071145094 0.213428077097239 0.218375847432046 0.201600432751081 0.204941291543536 0.203989905172815 0.208599738444948 0.207316801319579 0.203703276821049 0.219381433406248 0.201600432751081 0.216064599505390 4 0|4 /|+ 16807556 16809788 16808690.727 16807270 16809828 + gene protein_coding_gene FALSE TRUE AT4G35335.1 nucleotide-sugar transporter family protein similar to nucleotide-sugar transporter [Arabidopsis thaliana] (TAIR:AT5G41760.2); similar to Os07g0573700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060069.1); similar to Os06g0523400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057753.1); similar to Predicted UDP-galactose transporter (ISS) [Ostreococcus tauri] (GB:CAL52633.1); contains InterPro domain Nucleotide-sugar transporter; (InterPro:IPR007271) 0.197298292007798 1.81386811404228 0.097339984880076 1 0.83058030933508 9.88805788361569 0.197298292007798 0.119678931022219
AT3G25850_at 0.364953321826643 0.101411135471743 0.33456652699981 0.420808323893922 0.261888242349697 0.185280585820249 0.242594450923961 0.365581136386176 0.135608182410705 0.318621038646001 0.299503877698350 0.773186801563447 0.454490780203593 0.617625052916541 0.78367727965765 0.264480697023429 0.292875126822096 0.462345120098282 0.170854536319363 0.208603180830355 0.206591584883322 0.201965069849653 0.209283276701636 0.205857388280751 0.204995174116873 0.202409919834732 0.210364146946190 0.210144592085045 0.211730232212257 0.210508698440818 0.201965069849653 0.204367716877187 0.205305574542901 0.207557722802836 0.207015530656042 0.201965069849653 0.211172426967724 0.211957917113509 3 3 - 9459557 9459990 9459779.364 9459415 9460191 - gene protein_coding_gene FALSE TRUE AT3G25850.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G45730.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44770.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.158581374076511 1.81384097329782 0.0973443906442179 1 0.830542845477822 0.635577637687332 0.158581374076511 0.0541433229580744
AT3G14210_at 12.3072291004599 12.6375664891909 12.3343199506507 12.4405559873294 12.7772220381958 12.6493885315315 12.9290050240199 12.9087140531892 13.4909903577104 13.5085183868257 13.1669882747374 13.5988177705032 13.0993081966412 12.9087242624691 13.7822144892767 13.1201644936749 13.0139408234697 13.3492107106536 13.3071740554851 0.0801504848824077 0.0810705568045393 0.0802823358677493 0.0803528384027869 0.0779601143221779 0.0819722286513603 0.0785021465421348 0.0779601143221779 0.0888988845610666 0.0795947115263713 0.0841677524406429 0.0793434717285657 0.0816101819645973 0.0779601143221779 0.0818379533670198 0.0779601143221779 0.0811037765503847 0.0779601143221779 0.0816181180289603 3 3 + 4730895 4731527 4731258.636 4729830 4731810 + gene protein_coding_gene FALSE TRUE AT3G14210.1 ESM1 (EPITHIOSPECIFIER MODIFIER 1); carboxylic ester hydrolase A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni. similar to myrosinase-associated protein, putative [Arabidopsis thaliana] (TAIR:AT1G54010.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.162948422725163 -1.81321185533232 0.097446566501484 1 0.829674516902943 25.9682411773302 -0.162948422725163 0.064091470487487
AT3G55160_at 2.03954699827929 2.33564854106288 2.28996620732527 2.35639807662925 2.19921752814151 1.81509617195751 2.3982083749354 2.4255110013395 2.08324484953757 2.38480036228023 2.09041145567439 1.96244853453194 1.79271855590883 2.02212698927167 2.43340595180593 2.14090706791336 1.67121796600524 1.97681451382771 2.20606566721429 0.214165832800365 0.203189989371115 0.207103961959458 0.20470868480329 0.218601882165070 0.205750420246256 0.216322729061273 0.219368330256206 0.209534951807689 0.211337028665017 0.205581001188412 0.207079282508811 0.205597955925541 0.206076407005629 0.202774998598124 0.201647216347392 0.2156457351955 0.217447800958396 0.210658462961084 3 3|0 -|/ 20456436 20457013 20456771.3 20456389 20463377 - gene protein_coding_gene FALSE TRUE AT3G55160.1 similar to putative death receptor interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99561.1); similar to Os08g0169700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061088.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72654.1); contains InterPro domain HEAT; (InterPro:IPR000357) -0.174003239933763 -1.81287687374682 0.0975010111805112 1 0.829212225288608 4.35042911531453 -0.174003239933763 0.0848469150838007
ATCG00720_at 13.7581093660551 13.9784213987434 14.1686422963712 14.1557360757239 13.9150158577103 13.9804161839103 14.0789062338516 14.2267443637028 14.5717515356547 14.4686956956362 14.8738440535894 14.8330338781885 14.7380002708539 14.7638620965330 14.6434488333267 14.7356335875108 14.5218302775437 14.7271078226689 14.3465041513349 0.0542634500163698 0.0515280168591459 0.0540003355296586 0.0515280168591459 0.0518218733674275 0.0585773158710787 0.0516787237968497 0.0522368977656563 0.0584200698307664 0.0525389470223089 0.051718361964225 0.0516122843796267 0.0525614750345270 0.05216830413955 0.0518937249405959 0.0519854311672595 0.0572078344667174 0.0546631619619756 0.051562378173002 C C + 75713 76220 75966.909 74841 76292 + gene protein_coding_gene FALSE TRUE ATCG00720.1 Encodes the cytochrome b(6) subunit of the cytochrome b6f complex. Identical to Cytochrome b6 (petB) [Arabidopsis Thaliana] (GB:P56773); similar to cytochrome b (MTCYB) (COB) (CYTB) [Arabidopsis thaliana] (TAIR:AT2G07727.1); similar to cytochrome b6 [Spinacia oleracea] (GB:NP_054964.1); similar to Cytochrome b6 (GB:P06247); contains InterPro domain Cytochrome b6; (InterPro:IPR012232); contains InterPro domain Cytochrome b/b6, N-terminal; (InterPro:IPR005797) 0.155842618912811 1.81286045723486 0.0975036800749736 1 0.829189570750521 28.628705087043 0.155842618912811 0.0473415309494057
AT4G18600_at 5.7327985767091 6.14664174426324 5.60169949428648 5.783931752958 6.46924101098692 6.0136272264627 5.25292729558943 5.57551224540546 5.13005052494178 5.70411525977188 5.47990320811135 6.24821571665094 5.84179118034665 5.44774102526508 4.78888657964471 5.76338462032936 6.06515915075076 5.56729639338747 5.78347821262644 0.210686487276435 0.215558940151934 0.220781877421814 0.216043962862931 0.222923850578059 0.21628026588992 0.22340205194894 0.214912924301083 0.245603360196685 0.217030866835639 0.216670163401872 0.210512896756629 0.210512896756629 0.215273157139409 0.234390895996784 0.214715651055968 0.226290755861509 0.22012555577525 0.210512896756629 4 4 - 10240212 10240703 10240482.091 10239892 10247383 - gene protein_coding_gene FALSE TRUE AT4G18600.1 WAVE5 (WASP (Wiskott-Aldrich syndrome protein)-family verprolin homologous protein 5) putative WAVE homolog Identical to Scar-like domain-containing protein [Arabidopsis Thaliana] (GB:Q5XPK0;GB:O49528); similar to WAVE2 (WASP (Wiskott-Aldrich syndrome protein)-family verprolin homologous protein 2) [Arabidopsis thaliana] (TAIR:AT1G29170.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79092.1); contains domain FAMILY NOT NAMED (PTHR12902); contains domain His-Me finger endonucleases (SSF54060) 0.200618737106238 1.81274520112111 0.097522419573026 1 0.829030521906702 11.4168033683781 0.200618737106238 0.124325020738787
AT2G38560_at 7.04588419387625 7.30528366989439 6.87512131750751 6.96866563085747 7.36729316152479 6.68184229970103 7.11551022507558 7.44738734424493 6.9767874289535 6.67925637135488 6.21830585079245 6.64666019796279 7.04230237656463 6.86823637987727 6.77424987918621 6.67436158307545 6.21679467523069 5.93253773616909 6.49524532578652 0.206027288172232 0.214086110894625 0.207425257453750 0.205004748866884 0.205247831009158 0.205147814660815 0.203779255730458 0.206837609793782 0.209745716158553 0.206564186610114 0.205011539297979 0.202850259457801 0.211027532680988 0.200814789420597 0.206366307265340 0.201959088663934 0.217721955618071 0.210013693825855 0.207418295929837 2 2 + 16142840 16143290 16143094.909 16141716 16143773 + gene protein_coding_gene FALSE TRUE AT2G38560.1 transcription factor S-II (TFIIS) domain-containing protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42730.1); similar to putative transcription elongation factor, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAR01752.1); similar to Os03g0815900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051687.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Transcription elongation factor S-II; (InterPro:IPR006289); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990); contains InterPro domain Zinc finger TFIIS-type 2; (InterPro:IPR013138); contains InterPro domain Transcription elongation factor S-II, N-terminal; (InterPro:IPR003617); contains InterPro domain Transcription factor TFIIS; (InterPro:IPR001222) -0.212850523191366 -1.81266971859025 0.0975346940614602 1 0.828926361725407 13.7327622104464 -0.212850523191366 0.140166151671784
AT1G54340_at 7.1505902625462 6.91021147973523 7.22147059459936 7.24948123317313 6.9079048453546 7.28788518476531 6.58561285956921 6.07584918462454 6.09151988143997 5.97584486821775 5.85970357368933 5.9217363742983 5.82661452378001 6.01009762628507 5.96918852321038 5.70094283096069 6.64354613429445 5.74792893129056 6.09648230215618 0.172843878605959 0.179440322771965 0.174179943766954 0.173442114744413 0.177721937008417 0.171417683024627 0.181460335352122 0.189705197271923 0.190310060035412 0.182199360531608 0.184251245884354 0.175119278746325 0.178269270463168 0.173074834580065 0.182547695570096 0.171974367122564 0.174330317279636 0.177346582667126 0.174096037166050 1 1|0 +|/ 20289086 20289951 20289605.667 20287147 20290453 + gene protein_coding_gene FALSE TRUE AT1G54340.1 ICDH (ICDH); isocitrate dehydrogenase (NADP+) NADP-specific isocitrate dehydrogenase (ICDH) similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G14590.1); similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G65930.1); similar to NADP-isocitrate dehydrogenase [Citrus limon] (GB:AAD51361.1); similar to NADP specific isocitrate dehydrogenase [Daucus carota] (GB:BAA34112.1); similar to isocitrate dehydrogenase (NADP+) [Apium graveolens] (GB:CAA73139.1); contains InterPro domain Isocitrate dehydrogenase NADP-dependent, eukaryotic; (InterPro:IPR004790); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.195736824321218 1.81259293104874 0.0975471822077163 1 0.828820402923716 12.9309184548780 0.195736824321218 0.117729409292026
AT3G46100_at 7.47264221250539 7.57716531633868 7.69625563567417 7.51164755401506 7.72696091184745 7.35064115904245 8.12823829768857 7.58703588380932 8.32032855441599 8.06059574514904 7.98250622995425 8.01242548020842 7.72484824298426 7.8885583500082 7.5304559095851 7.96146019311118 7.87739436288244 7.82320680306356 7.99226983435578 0.152040480117276 0.149008124758718 0.149797242045506 0.144976189594146 0.157297826638550 0.15972982981757 0.151837159519513 0.151998460084413 0.147041023119303 0.150975992578082 0.156505221190547 0.144907764178916 0.154518654685834 0.156501687441377 0.158392623867175 0.144404198771168 0.151410641851056 0.158190100199014 0.154119671511737 3 3|0 -|/ 16939453 16940060 16939781.7 16939279 16942018 - gene protein_coding_gene FALSE TRUE AT3G46100.1 ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase histidyl-tRNA synthetase similar to ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G03406.1); similar to PREDICTED P0627E03.18 gene product [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL56871.1); similar to Os02g0754700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048157.1); contains InterPro domain Histidyl-tRNA synthetase, class IIa; (InterPro:IPR004516); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.197092605303149 -1.81091868815468 0.0978198310884921 1 0.826510673161148 15.6185758669226 -0.197092605303149 0.119836054133286
AT1G22630_at 9.24358312152463 9.28837874324172 9.47625041370083 9.481027149434 9.89574412841497 9.37400255416759 10.1114542875402 9.74494327780783 9.07548062337169 9.7192926684682 9.99034606777511 9.87615806753656 9.5502896323582 9.84650518830938 9.48048596737517 10.0117376769517 10.0322457561709 9.60001688214055 9.33699048568068 0.132371411726872 0.132444445603228 0.135000671438413 0.134310377591375 0.137155792984461 0.140603470517956 0.135517784206324 0.144323425390076 0.154185118645725 0.138431951018619 0.140948189609433 0.135034941819022 0.14336294056481 0.13896666276993 0.142187148320305 0.132324559048746 0.138788620595994 0.137561778744257 0.13649564549178 1 1|0 +|/ 8003476 8003737 8003562.1 8003304 8004293 + gene protein_coding_gene FALSE TRUE AT1G22630.1 similar to Os05g0105800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054413.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938) 0.190442383110535 1.81052628308609 0.0978838342905308 1 0.825969476705242 19.164786833146 0.190442383110535 0.110616191245911
AT1G50350_at 0.846441193284665 1.04735663106801 0.513585458573935 0.776732264979492 0.553012115779044 0.909820869509202 0.819070686892073 0.973061617878454 0.959713592865699 0.979746516637135 1.24714649573723 1.00111422305882 0.594777329609332 0.928671740450413 0.58130041657844 0.544098281993862 0.877621745862677 0.844861520054154 0.898221732672343 0.202641730170944 0.201984646002055 0.219421359285714 0.201984646002055 0.212951732308633 0.216148463975991 0.208654197302926 0.208372380859251 0.221626297773345 0.208417246544137 0.206669894883178 0.206608947019502 0.207569244938506 0.208662947554118 0.214684426400835 0.207064023282245 0.211377486945020 0.224358894292696 0.204516355729238 1 1|0 +|/ 18652433 18652867 18652614.9 18652424 18652895 + gene protein_coding_gene FALSE TRUE AT1G50350.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G19950.1); similar to Os06g0101300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056529.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78566.1) -0.175819916646995 -1.81002919916840 0.097964965929217 1 0.825283992714933 1.69155656302553 -0.175819916646995 0.0883492699887135
AT2G40200_at 1.73281808695078 1.60631737275138 1.73348193136049 1.50535299960307 1.70721728322799 1.44831964926059 1.65741915227249 1.75592574330619 1.57923534840575 1.77589050507753 1.83418858343760 1.43167580176581 1.35293824296994 1.51357272769082 1.6140889754128 1.20176321815020 1.74688128558288 1.45738159465971 1.91440328414912 0.201724746897208 0.207561595146618 0.205878119228305 0.210256875914326 0.205622155120622 0.213321292175114 0.20247580649619 0.203712518304708 0.226426813714013 0.210939894343122 0.206632265953559 0.207666952577508 0.204381845108601 0.205801592518392 0.210996868170686 0.209092770815467 0.215034948470431 0.215534125217127 0.205353126467098 2 2 + 16798356 16799076 16798759.182 16798176 16799168 + gene protein_coding_gene FALSE TRUE AT2G40200.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68810.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94029.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.163487765896294 -1.80984438585659 0.0979951458924659 1 0.825029156933668 3.28114203546805 -0.163487765896294 0.065846509015334
AT3G27240_at 9.39894684020937 9.64787368214675 9.82026136441551 9.82005247727353 9.06161429235357 9.10495931983259 9.90347046973413 10.0300309827604 8.31261843624564 9.22533321908964 9.49386600745104 9.526283350618 9.49089027109616 9.24941553085374 9.55016011332277 9.26765088849063 9.38054744728965 9.26277385269248 8.85319521387447 0.106551999861145 0.0996107922601565 0.0996107922601565 0.0997745744709885 0.0996107922601565 0.106993515354860 0.0996107922601565 0.101760004583905 0.120305636036675 0.105443127125462 0.101665184891713 0.0996107922601565 0.100329576658359 0.107224135805737 0.104114429791517 0.103478379794677 0.105007487405409 0.114372451436217 0.108487151060305 3 3|0 -|/ 10057393 10058394 10057954.222 10057026 10059953 - gene protein_coding_gene FALSE TRUE AT3G27240.1 cytochrome c1, putative similar to cytochrome c1, putative [Arabidopsis thaliana] (TAIR:AT5G40810.1); similar to Cytochrome c, monohaem [Medicago truncatula] (GB:ABE81122.1); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Cytochrome c1; (InterPro:IPR002326) 0.156145423039844 1.80962390275248 0.0980311618073494 1 0.824725153547062 18.6982748731558 0.156145423039844 0.0489047002698286
AT1G53060_at 2.13767782723809 2.22371373950843 2.18983684670132 1.99467730965182 2.21287450776515 2.50532368319465 2.55448985234 2.29023245350566 2.40825337159755 2.81028572129866 2.09246311790575 2.50566409487494 2.3180184051573 2.27863000448223 2.10347531662019 1.94635764096301 2.60524121600393 2.44269233722030 2.43070833484068 0.210582478685662 0.209825890438011 0.215964087769710 0.212594623561193 0.215983380047670 0.209257141127783 0.211226850050947 0.212119641393873 0.214040493255198 0.209405531218169 0.230567211406951 0.218116320358576 0.210363165394719 0.220234580483616 0.222983135068048 0.215029193018144 0.210088790424374 0.213983359075756 0.210544326934787 1 1 + 19779849 19780397 19780082.727 19779720 19780448 + gene protein_coding_gene FALSE TRUE AT1G53060.1 legume lectin family protein similar to legume lectin family protein [Arabidopsis thaliana] (TAIR:AT1G53080.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC57685.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.169515878622658 -1.80938522911115 0.0980701627433787 1 0.824396089593344 4.68176173210435 -0.169515878622658 0.0775562805678777
AT1G01600_at 1.57969801852578 2.12065168060162 1.74531820603618 2.0849539224416 2.09877173347742 2.20751116299012 2.12936685431978 1.67147337400213 2.10100239341003 1.85755568539082 2.29657203080386 2.64051823673698 2.23023628332092 1.84876371218447 2.17111601595731 2.28646365740669 1.51106046855682 2.21106863309462 1.70540628018007 0.217821812532674 0.214815178320346 0.223157318771255 0.215390984968141 0.212784591559703 0.216891997406340 0.217711659440914 0.219293980275671 0.219238120924986 0.2210152921517 0.215244037230954 0.226154979790358 0.220696500560515 0.214858893402685 0.217970738192553 0.216783015852921 0.233121950929852 0.219188584831838 0.217207095953698 1 1 + 220396 220905 220626.818 218994 221286 + gene protein_coding_gene FALSE TRUE AT1G01600.1 CYP86A4 (cytochrome P450, family 86, subfamily A, polypeptide 4); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. similar to CYP86A8 (LACERATA), fatty acid (omega-1)-hydroxylase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45970.1); similar to CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G63710.1); similar to CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G00360.1); similar to cytochrome P450 monooxygenase CYP86A24 [Glycine max] (GB:ABC68403.1); similar to cytochrome P450 [Triticum aestivum] (GB:AAG17470.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE91393.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.210164017235703 1.80906843746376 0.0981219505454019 1 0.823959356007725 3.97344961875834 0.210164017235703 0.137300526266610
AT4G11440_at 1.65162833403799 1.94211661554397 1.35088415324398 1.83047777359898 1.52666061472548 1.26365046587778 1.25898319214524 1.59166715766809 1.26534742040454 1.68114892999328 0.944707444064323 1.47076543046479 1.15338914484881 1.05430945580187 1.10312316873013 1.28176099722292 1.51585834504412 1.12084784186486 1.50487047149727 0.235644886064169 0.232700809758021 0.239909457776501 0.230445744625991 0.243620018564327 0.251706003948399 0.232656478999726 0.236692890393359 0.259949947635310 0.256525020863458 0.236256276175264 0.252211652491509 0.228338720414084 0.237751105800052 0.240240603160144 0.228712761759031 0.227548713396471 0.234208374894442 0.236408357748306 4 4 + 6956902 6958471 6957547.444 6955845 6958548 + gene protein_coding_gene FALSE TRUE AT4G11440.1 binding similar to SAMC1/SAMT1 (S-ADENOSYLMETHIONINE CARRIER 1, SAM TRANSPORTER1), S-adenosylmethionine transporter/ binding [Arabidopsis thaliana] (TAIR:AT4G39460.1); similar to Mitochondrial substrate carrier [Medicago truncatula] (GB:ABE92114.1); similar to Os02g0665200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047664.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.198187142556867 -1.80864164239326 0.0981917606604972 1 0.823371029944271 2.89670062292365 -0.198187142556867 0.121662037006377
AT2G30260_at 7.59491341660204 7.67909999432914 6.98332558483464 7.18986876357388 7.7631600471768 7.33680314221054 7.01369809264045 7.01802370989811 7.71699313445929 7.22477576326248 7.38550927652369 7.3289957809131 7.14239251750424 7.16018937463702 7.13662409097696 7.01521681407039 6.68439986496108 6.99609635392121 7.38836190415774 0.176287726636604 0.177608776899764 0.192597188563748 0.197437314264736 0.176437843621977 0.186660359608692 0.181395671323802 0.176902577474408 0.190613010597321 0.186625530483955 0.179108102452400 0.176287726636604 0.183544114054570 0.188611051737686 0.183188793167925 0.180802545896856 0.189224389398704 0.201816099030476 0.179108573331727 2 2 - 12912644 12914013 12913140.364 12912479 12914586 - gene protein_coding_gene FALSE TRUE AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. similar to small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] (TAIR:AT1G06960.1); similar to spliceosomal protein (GB:AAA33847.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.172671671844926 -1.80857936607432 0.098201950870765 1 0.823285189380426 14.5971390654823 -0.172671671844926 0.0832726357833419
AT4G13740_at 2.59887040939389 2.8977415654231 2.47608877723827 2.79177446727366 2.37928986565716 2.64645479368501 2.3112841887278 2.65674497229642 2.68443801654494 3.13763664430354 2.87326601263097 2.5483014678376 2.44905085269642 2.79965727192103 1.92565850111101 2.73038613568507 2.31455965705179 3.0446488084225 2.9312763323204 0.22010336874118 0.232810093135639 0.230319782508523 0.230779459234652 0.227610646259323 0.225014023351693 0.224691014833361 0.232145418129189 0.228599222267967 0.227317302392866 0.227635057397431 0.224287111478411 0.230871959300775 0.223977461319085 0.231931675714541 0.222322800401523 0.223294357935467 0.22010336874118 0.224116959131276 4 4|0 +|/ 7976660 7977323 7976940.6 7975184 7977362 + gene protein_coding_gene FALSE TRUE AT4G13740.1 EMB2597 (EMBRYO DEFECTIVE 2597) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08300.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91506.1) -0.187425441983425 -1.80800454826260 0.0982960532244523 1 0.822492939901215 5.3465185063665 -0.187425441983425 0.106636176355198
AT3G20840_at 1.10337268046926 1.04516048177571 0.842021683996441 0.853255588367449 0.834839935534033 0.916382693091396 0.926011562083917 1.03464834396028 1.33267456149419 0.757574666438379 0.88449325161012 1.29560567180618 1.09296708233768 1.03090314339496 1.20151925861511 1.00737580924158 1.23611578779593 0.718677666848451 1.48316908270250 0.230940759928422 0.229677313908310 0.241244832055036 0.233044012152798 0.236841301813839 0.236421164005961 0.233246015042181 0.231501677190133 0.23925225637929 0.228084091599849 0.234778976933997 0.233991993140998 0.235619345787914 0.231836593534360 0.228084091599849 0.233017392985034 0.237734568434627 0.23157954475939 0.232661084925614 3 3 + 7302797 7303269 7303036.091 7300681 7303699 + gene protein_coding_gene FALSE TRUE AT3G20840.1 PLT1 (PLETHORA 1); transcription factor Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. similar to PLT2 (PLETHORA 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51190.1); similar to AP2/EREBP transcription factor BABY BOOM [Medicago truncatula] (GB:AAW82334.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE78008.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.149177759873533 -1.80799323927199 0.0982979054220947 1 0.822477354401715 2.06925994407711 -0.149177759873533 0.0256483314649118
AT3G23460_at 1.14920434459829 1.41411377422546 1.42213721876223 1.31029992700876 1.38085105119399 1.39377291679005 1.36392229495631 0.884990832538268 1.58586894422308 1.14692186833266 1.39304209950509 1.8131560177385 1.47665910344672 1.68792739262743 1.54982371814988 1.5407990015362 1.43297959713831 1.30759749555799 1.2792325740599 0.156594870549678 0.154624494700086 0.150253028287211 0.156784632790209 0.150253028287211 0.151807048305600 0.156632728827227 0.153676894060741 0.155456563322891 0.154319257691434 0.157958799660315 0.154775172148624 0.152510956893026 0.154670804814651 0.152229598297899 0.150486230529338 0.155067187643097 0.163517419021444 0.152313237895885 3 3|0 +|/ 8412571 8412968 8412731.2 8412326 8414326 + gene protein_coding_gene FALSE TRUE AT3G23460.1 cyclopropane fatty acid synthase-related similar to cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative [Arabidopsis thaliana] (TAIR:AT3G23510.1); similar to cyclopropane fatty acid synthase [Gossypium hirsutum] (GB:AAT74602.1); contains InterPro domain Cyclopropane-fatty-acyl-phospholipid synthase; (InterPro:IPR003333) 0.180807195599905 1.80776109769137 0.0983359328257562 1 0.822157438864262 2.72120613605137 0.180807195599905 0.0966982179932633
AT4G36550_at 6.9276684934251 7.85771470822106 7.3048332919321 7.95878272166439 7.8294488617106 7.4220759895241 6.98134780568268 7.1613935736785 6.75272682449829 6.77533336258744 7.38454109007181 7.49993330590874 7.2542167732099 6.8639553209677 5.93073937584185 7.37099192700256 6.72205669426342 6.58429258714105 6.87212173632802 0.259491287530495 0.261619302430379 0.272326256533826 0.262373121556905 0.268169136819424 0.265453144477652 0.286962116031123 0.256834136057771 0.27602821588782 0.261653917382459 0.256480337482126 0.255157987672274 0.25953386861584 0.271322084843030 0.272850975742253 0.254003190851477 0.288250845670714 0.262970852415737 0.271397471274118 4 4 - 17245456 17245915 17245698.909 17245403 17247585 - gene protein_coding_gene FALSE TRUE AT4G36550.1 U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to bg55 [Bruguiera gymnorrhiza] (GB:BAB55653.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.274017157059464 1.80757213930354 0.0983668962311205 1 0.821897049339606 14.3061089434492 0.274017157059464 0.211311362941256
AT1G15020_at 5.38166410011665 4.98326689228154 4.80934981207306 4.71832574515464 5.45220777277591 5.16604999792115 4.96340845201014 4.33553056252811 4.56810321818871 4.73757735125225 4.1792107403359 4.09346694818511 3.69279178834774 3.90960976491501 4.448674586044 3.52872917393826 3.92253236350447 4.07664390442917 4.26675674999621 0.225370416613330 0.216523554621813 0.212623346269718 0.235098002498587 0.224933417848194 0.222426956268465 0.219223055539576 0.216869171990346 0.241162933656848 0.224405706654036 0.215748069175412 0.216086876933655 0.217410973041590 0.227985566989200 0.223096200799098 0.224450238948442 0.225322485766214 0.228028232713673 0.229679020680422 1 1 - 5173460 5173960 5173653 5173092 5176218 - gene protein_coding_gene FALSE TRUE AT1G15020.1|AT1G15020.2 ATQSOX1 (QUIESCIN-SULFHYDRYL OXIDASE 1); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. similar to ATQSOX2 (QUIESCIN-SULFHYDRYL OXIDASE 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT2G01270.1); similar to Thioredoxin domain 2; Erv1/Alr [Medicago truncatula] (GB:ABE92220.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Erv1/Alr; (InterPro:IPR006863)|similar to ATQSOX2 (QUIESCIN-SULFHYDRYL OXIDASE 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT2G01270.1); similar to Thioredoxin domain 2; Erv1/Alr [Medicago truncatula] (GB:ABE92220.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Erv1/Alr; (InterPro:IPR006863) -0.211086267093092 -1.80697583395182 0.0984646672370245 1 0.821075413673816 9.22902700778674 -0.211086267093092 0.138781061369903
AT3G05040_at 4.09803083536126 4.41733664086801 3.55420718384918 4.32588727805786 4.14866328223020 4.42451545905748 4.60794714335212 4.40088805959103 3.7054503248833 3.6150174018644 3.58965193317432 3.44158700722341 3.626036987728 3.20824100408607 3.52251078297754 3.4075748040187 3.7358039364463 3.62305759582417 3.78551241418684 0.244686230898456 0.239179512754535 0.260162632592279 0.245497723113835 0.246038975657994 0.250357925156280 0.241345435191578 0.240961106959611 0.25161383009669 0.241846798215974 0.248670992771134 0.247637953519898 0.240240766047709 0.250815794513567 0.249464644570770 0.249621501180627 0.254746900289476 0.242803816149669 0.239179512754535 3 3 - 1401781 1402607 1402393.778 1401277 1408203 - gene protein_coding_gene FALSE TRUE AT3G05040.1 HST (HASTY) Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species. similar to Os01g0363900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043034.1); similar to HASTY [Medicago truncatula] (GB:ABE83653.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Exportin 1-like; (InterPro:IPR013598) -0.225208871435561 -1.80577256925916 0.0986622256862397 1 0.819417871857957 7.85783517866906 -0.225208871435561 0.156364657164037
AT1G27100_at 8.96500886354442 9.1888739656476 9.0570447539837 9.3546601378688 9.19351831463639 9.25605462639612 8.51747593620809 8.8176966728764 8.58460456959888 8.1579026529586 8.40823166517953 8.37841252203598 8.54472628004226 8.59545858864088 8.26365216438216 8.56479777113647 8.26330826080381 8.33384177126395 8.50865823347306 0.144914792641737 0.136007385518403 0.149779309265834 0.141056716693168 0.142569907319486 0.141730309647327 0.138788415196649 0.138347279678711 0.146457642515944 0.141729257213547 0.136482497919235 0.142187333253836 0.139243020441289 0.13938724022014 0.143891978307989 0.145810881918919 0.149977253716572 0.140944032365302 0.152374408070975 1 1 - 9407560 9408155 9407861.1 9407112 9411159 - gene protein_coding_gene FALSE TRUE AT1G27100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69890.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 0.172527037288787 1.80577008139844 0.0986626345303058 1 0.81941444530495 17.4618460488681 0.172527037288787 0.0834858784420374
AT3G09210_at 8.8363506290686 9.08627319350934 8.62089494980456 8.57572077321176 9.23005537213063 8.61291163441847 9.19968864023337 8.9270854123473 9.3890028235001 9.82137537469176 9.74553908385852 9.85043033948282 9.42661480165897 9.23591911834745 9.64882986937523 9.70937117882304 9.09161960350448 9.1015916977269 9.6619619732572 0.120745682880631 0.121589926949211 0.119102126945923 0.122143592585621 0.121366927251538 0.125183360993448 0.119075925486554 0.123791809767328 0.13014184696922 0.123809144464398 0.130445483736558 0.118945670776225 0.123075646277338 0.121893375178721 0.126530268824921 0.122628187351070 0.129154537913046 0.128593705750501 0.121189272034610 3 3 - 2825432 2826148 2825777.455 2825285 2826886 - gene protein_coding_gene FALSE TRUE AT3G09210.1 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcriptional elongation regulator similar to NusG [Medicago truncatula] (GB:ABE83852.1); contains InterPro domain NGN; (InterPro:IPR006645); contains InterPro domain Bacterial transcription antitermination protein NusG; (InterPro:IPR001062); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.200163857642072 -1.80574728621913 0.098666380661454 1 0.81938304940802 18.4362990016306 -0.200163857642072 0.124753198375992
AT4G18070_at 8.49614041391874 8.58400280498917 8.09487355842541 7.76441799713938 8.79797966610028 8.66486403755852 9.18855571383875 9.1729099832694 8.94935751905068 8.3628005757097 9.09618356620121 8.75956294963947 8.8872119548516 8.98703406379535 8.5885698635333 8.85728286824767 8.17766644410841 8.8671882917448 8.4031370454125 0.114452511680949 0.112603957803016 0.122092280239399 0.122044461797342 0.113855283738341 0.114985602917712 0.115485677418937 0.117020374530724 0.118475668650175 0.124011549670354 0.112921531083345 0.112603957803016 0.116475023958587 0.112627690431557 0.119616898396855 0.116110762795184 0.128839153245019 0.118303290538993 0.127815366735533 4 4|0 +|/ 10031794 10032105 10031939.7 10030644 10032975 + gene protein_coding_gene FALSE TRUE AT4G18070.1|AT4G18070.2|AT4G18070.3|AT4G18070.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29530.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_500773.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29530.1) -0.162022980328590 -1.80571829585519 0.0986711450886165 1 0.819343121141263 17.2701442953997 -0.162022980328590 0.063557311484416
AT2G25070_at 9.56342706614245 9.70281722176029 9.81540679667717 9.82741798155 10.2058128130912 10.0631022330440 9.67719000963595 9.79577453108952 9.46866632301275 9.53588833885405 9.71372831712533 9.19178632961941 9.6183524703222 9.61016014929696 9.38780112599645 9.75818552530749 9.51189680336031 9.38363935529423 9.52395107324546 0.0864226158254858 0.0844189952430618 0.0891888094960894 0.0844313903961614 0.0853529110863856 0.0833198306402705 0.083944884431874 0.082951417309129 0.0934977779854415 0.0861825650635023 0.0869037183584827 0.0899223773004733 0.0863060147150387 0.0859788720410676 0.0883863902805384 0.082951417309129 0.0878014508563474 0.0938490998583742 0.091511302775522 2 2 - 10670622 10671507 10671022.636 10670319 10673043 - gene protein_coding_gene FALSE TRUE AT2G25070.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31860.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to Os02g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046088.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE93914.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.152787298384873 1.80556068343109 0.098697051600667 1 0.819126047995433 19.347091417246 0.152787298384873 0.0402151941887282
AT1G53840_at 9.11847916060329 9.20073865461263 8.11801114688238 8.24457081922657 9.03061171560614 8.75125591844481 9.40284739359474 9.09235329049731 8.75031451662409 8.51784476890974 9.08740447838851 9.22479293572933 9.21973426359757 9.00895830447418 9.16034137687404 9.16089916219012 8.565989667689 8.98337384448016 8.8963030603629 0.133446369324609 0.130288460102044 0.144038428654415 0.140334107863461 0.130350518871917 0.140994206732082 0.139224069008936 0.137648700746163 0.154036258475538 0.134719880501595 0.130466007657411 0.131579087866066 0.137410606780161 0.129005759042898 0.134503256283978 0.130046932954553 0.159296198609302 0.141731821517020 0.127819406788518 1 1 + 20106534 20107063 20106784.545 20105113 20107335 + gene protein_coding_gene FALSE TRUE AT1G53840.1 ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G14300.1); similar to Pectinesterase-3 precursor (Pectin methylesterase 3) (PE 3) (GB:Q43111); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE86450.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.168771459620697 -1.80554048226390 0.0987003724833493 1 0.819098226434092 17.7563206138385 -0.168771459620697 0.0768546311357258
AT4G21710_at 8.37376224960126 8.41805407783262 8.2074125376061 8.17874395675408 8.73327746320467 8.68604901195216 8.25080401474916 8.29498335021356 8.02472155451789 7.98440969786168 7.61406010271815 7.63511070838182 7.73536233924248 7.73751595004515 7.63536144863322 7.63972132636283 7.42654527480032 7.83181164739687 8.19548876203009 0.153090257891458 0.159178163279383 0.153090257891458 0.161848680448744 0.160465848865744 0.155650712268871 0.159202510307241 0.157903408045037 0.159057939040895 0.153090257891458 0.163234460427703 0.156764700430885 0.158305894001062 0.163214190257069 0.165494317090332 0.154565701834666 0.177404012372030 0.155393850042358 0.153090257891458 4 4 - 11535715 11536393 11536040.909 11535537 11542280 - gene protein_coding_gene FALSE TRUE AT4G21710.1 NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding encodes the largest subunit of RNA polymerase II complex (aka RNA polymerase B). Identical to DNA-directed RNA polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2) (RPB135) [Arabidopsis Thaliana] (GB:P38420;GB:Q9SVS6); similar to NRPC2 (nuclear RNA polymerase C 2), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G45140.1); similar to NRPD2a (NUCLEAR RNA POLYMERASE D 2A), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G23780.1); similar to RNA polymerase II second largest subunit [Rhododendron macrophyllum] (GB:AAZ08457.1); similar to RNA polymerase II second largest subunit [Petunia x hybrida] (GB:AAY89347.1); similar to DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase II subunit 2) (GB:Q42877); contains InterPro domain RNA polymerase beta subunit; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 7; (InterPro:IPR007641); contains InterPro domain RNA polymerase Rpb2, domain 2; (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6; (InterPro:IPR007120); contains InterPro domain RNA polymerase Rpb2, domain 4; (InterPro:IPR007646); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase Rpb2, domain 5; (InterPro:IPR007647); contains InterPro domain RNA polymerase, beta subunit; (InterPro:IPR007121) -0.147150376246086 -1.80545344452277 0.0987146818366673 1 0.818978357610293 16.2554572183229 -0.147150376246086 0.0144435800201135
AT1G24575_at 7.50133927313217 7.97941890045689 7.00039347588903 7.03594249246109 5.45480304256594 5.50126774159521 5.20561941569577 5.32108175096853 4.44255889640749 4.32072569551754 4.40452603570000 4.02931118966877 3.88042290724135 4.26271901493772 3.6847860733409 4.41935456289854 4.82557984766697 3.16082005603216 3.76852404566226 0.211596020227834 0.225630131806194 0.216975627406649 0.224219307944202 0.210013452996578 0.214624156853888 0.209428135844541 0.222069327602258 0.220568270937054 0.209428135844541 0.215125928619934 0.2182876773 0.212253441685592 0.211911709194291 0.219912293900550 0.209428135844541 0.216938801035081 0.215402306211030 0.209428135844541 1 1 - 8711199 8711438 8711337.364 8711023 8711515 - gene protein_coding_gene FALSE TRUE AT1G24575.1 unknown protein -0.173796365931077 -1.80541065586046 0.0987217171568969 1 0.818919429896848 10.5053380149947 -0.173796365931077 0.0857126283707605
AT3G12340_at 3.96796785111285 4.49159254885487 4.38221027174717 3.95692789480518 3.86690664566917 3.66907440568686 3.89988249657526 3.84162715863142 3.89566774905165 3.65705762489838 3.44023925310676 3.56291490538321 3.87362979096129 3.31920512342681 3.77742818569853 3.58970553325339 3.8283883022563 3.51460369152058 4.23077065732683 0.223219227683338 0.230269020686402 0.222483289958549 0.224382717584758 0.221944784027476 0.219779220806699 0.220604678266736 0.219428060831054 0.225890610902028 0.224695415589958 0.220306284870237 0.221494402355297 0.223064896835128 0.222621106470570 0.219752902932768 0.222114875604803 0.226321066804642 0.224747950288294 0.22084930782732 3 0|3 /|- 3925746 3927042 3926399.1 3925727 3928601 - gene protein_coding_gene FALSE TRUE AT3G12340.1 FK506 binding / peptidyl-prolyl cis-trans isomerase similar to immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related [Arabidopsis thaliana] (TAIR:AT4G25340.1); similar to OSIGBa0140O07.15 [Oryza sativa (indica cultivar-group)] (GB:CAH67247.1); similar to putative immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase [Helianthus annuus] (GB:AAR23804.1); similar to Os04g0446500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052910.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.198027685770632 -1.80443165047842 0.0988828102142178 1 0.817571352232206 7.78007183844859 -0.198027685770632 0.122071538576424
AT1G14780_at 2.37221411837282 2.82396990292650 1.54015632496724 1.72576437948791 3.27877481408698 2.96347831133001 1.90331503059951 1.86469828387471 2.41279181478484 2.15602528892219 2.69384764509364 2.66755252895566 2.40028781077036 3.01852301272332 2.39598348208339 2.69201061046064 1.49397159270049 2.35434839931381 2.13431333590036 0.2363590685987 0.230808634757442 0.244623608636508 0.241032454467247 0.240033292018336 0.238221343357906 0.236767403803552 0.236695498150049 0.237541333418567 0.240640325863963 0.241115168855566 0.230808634757442 0.239891676034466 0.237253992071507 0.233099941322097 0.232053617309180 0.234458651438104 0.232990893494174 0.238171188951857 1 1 + 5093299 5093816 5093556.091 5090985 5094147 + gene protein_coding_gene FALSE TRUE AT1G14780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24290.2); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE92593.1); similar to Os06g0251100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057295.1); similar to Os02g0736300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048052.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862) 0.183091472792424 1.80379154581447 0.098988267333708 1 0.816690132905887 4.65851761993827 0.183091472792424 0.100823728843920
AT2G46870_at 4.02369303336275 4.05280353034571 3.79100378737197 3.01407251795151 4.21982756493361 3.65344888107011 4.74999047362 4.34216127091357 4.17862559045749 4.00640566208717 4.14704801979761 4.98764591323144 4.58633789126736 4.26950542049759 3.75280564894131 3.7988587006088 4.20386811033907 3.68515368606492 3.95873505586228 0.198578457978707 0.200777040338988 0.20164911427335 0.198780107083199 0.197673438416648 0.204511309044188 0.203992273637760 0.206998042041232 0.203930533344087 0.195889625969813 0.201903160549512 0.195517424133584 0.201436564347891 0.201126652548008 0.200960011242052 0.195517424133584 0.202228989723943 0.206184168321746 0.195517424133584 2 2 + 19268718 19269218 19268982.818 19267987 19269473 + gene protein_coding_gene FALSE TRUE AT2G46870.1 NGA1 (NGATHA1); transcription factor similar to NGA2 (NGATHA2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61970.1); similar to Os02g0683500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047754.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.245796534093754 -1.80307126734076 0.0991070555164324 1 0.815698725805921 8.09428764576906 -0.245796534093754 0.180805198041862
AT1G79490_at 2.14290411941481 2.51212316782458 2.39125915258755 2.44011857924219 2.19722563655807 2.30332886889709 2.19521163619687 3.04838562784788 1.69249617303028 2.55281477204958 1.88546217075008 1.84013678732485 2.16533609811439 1.79552891977977 1.53086977431177 2.02925589238742 2.31274697879814 2.07798832069281 2.57167810508381 0.206635728980137 0.211400419373587 0.206658405061461 0.212384946881909 0.204002094384428 0.211143131935517 0.20811610561983 0.211051719141286 0.212060554862128 0.207053052218327 0.209581697240174 0.210775418915069 0.204002094384428 0.205840467666768 0.212082948413157 0.20755080072993 0.207037387214179 0.206797012827356 0.205092144880348 1 1 + 29907506 29907987 29907754.273 29905349 29908082 + gene protein_coding_gene FALSE TRUE AT1G79490.1 EMB2217 (EMBRYO DEFECTIVE 2217); binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18900.2); similar to hypothetical protein [Oryza sativa (indica cultivar-group)] (GB:BAD08211.1); similar to Os04g0612800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053849.1); similar to Os12g0638900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067384.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.229668572058896 -1.80273856457363 0.0991619685982797 1 0.81524085292801 4.51731724915003 -0.229668572058896 0.162143419749031
AT1G31430_at 1.12277734140342 1.17311732430120 0.794475305187068 0.946010095849768 0.96877289669412 1.00418015437857 1.13955916220171 1.12267273582231 1.05614572126744 0.72150431850715 0.800415414526033 0.864969309329934 1.12039852389326 0.950801301888867 0.865552478468754 0.601535965312304 0.903518625710038 0.892655152190386 1.10972362999866 0.205475495799520 0.205326101459910 0.209090317813940 0.205326101459910 0.212058323159652 0.208452009475228 0.208395572488115 0.210515927124377 0.211052895278417 0.2149670094808 0.214619894556006 0.207603140256346 0.208811804620408 0.205326101459910 0.21918304273484 0.205326101459910 0.209861163753678 0.217171102931426 0.205326101459910 1 1 - 11254053 11254504 11254299.182 11253917 11255718 - gene protein_coding_gene FALSE TRUE AT1G31430.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22410.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96949.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.149324535707123 -1.80239895716148 0.0992180498689645 1 0.814773521097542 1.95266499514945 -0.149324535707123 0.0284545927315601
AT1G01910_at 8.49367630042464 8.54389860638928 8.55329774950799 8.5120135802473 8.69428087395746 8.6103666459169 8.47025495324077 8.28542864411192 7.67828578343287 8.1363822877945 8.23748091234043 8.2974786658846 8.16158699202818 7.9536636286473 8.18038046369051 8.30633123888149 8.02218310559562 8.03470635514016 8.15681889816158 0.135526105192577 0.137976916356699 0.142339498116614 0.13406792257383 0.130657661127989 0.148103348910821 0.137270507759871 0.141316667439074 0.147666339694999 0.132499855197093 0.134863690406984 0.130600329050278 0.137102501011487 0.145350075798381 0.13439187450006 0.131526392272337 0.136429146281887 0.146575582014218 0.130433561731378 1 0|1 /|- 313640 314500 313987.889 313101 315902 - gene protein_coding_gene FALSE TRUE AT1G01910.1|AT1G01910.2|AT1G01910.3|AT1G01910.4 anion-transporting ATPase, putative|ATP binding similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to arsenical pump-driving atpase [Aedes aegypti] (GB:EAT35519.1); similar to Os09g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063707.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348)|similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to PREDICTED: similar to CG1598-PA [Tribolium castaneum] (GB:XP_974589.1); similar to Os09g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063707.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348) 0.151452925089407 1.80170556022884 0.0993326440501662 1 0.813819477655068 16.5902632075940 0.151452925089407 0.0368850193277537
AT1G13470_at 9.3115423203714 9.50959428437332 10.2225119684912 9.92418262506784 8.48142053973921 7.77653105527637 3.63171646221014 3.55587174915455 7.84222889191921 5.34515581433526 2.94497356506353 3.73057968813197 4.10993734829834 4.18064036945116 2.51278669793069 2.97155654793142 3.78906161747773 3.17737180023952 6.14702378703327 0.431300900975791 0.435844760139673 0.437899255250357 0.435676632499371 0.436456788797905 0.425880111610582 0.410399000773038 0.416889716158158 0.420862802259215 0.410399000773038 0.415202344006465 0.411514286944541 0.410399000773038 0.410399000773038 0.432520534857946 0.425199292552144 0.411593857764604 0.416753576705374 0.414934994395038 1 1 - 4620397 4620864 4620640.182 4620225 4621577 - gene protein_coding_gene FALSE TRUE AT1G13470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13520.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99699.1); contains InterPro domain Protein of unknown function DUF1262; (InterPro:IPR010683) -0.209354516832036 -1.80109231870858 0.0994340917315714 1 0.812975872272797 12.7376295182912 -0.209354516832036 0.137450139719937
AT4G27440_at 12.1542529666430 12.3009603649271 10.9825888574276 11.0399992343360 11.8402811052350 11.4386864640103 11.4198169912403 11.1645104080963 11.6969388503040 11.4299706396218 12.4892612643425 12.8171873453961 11.8357210548555 12.1452389212147 12.5834441555059 11.6017337506560 11.5630044798778 12.0709499871861 10.940705926414 0.091510109494854 0.0896754331543739 0.0990145447773136 0.0918564322849349 0.0899985156110387 0.0939764833494183 0.0906846269762417 0.0897157792170276 0.0995939843619372 0.0934134834878542 0.0897421341229706 0.0896754331543739 0.0909485853960557 0.0934740607898583 0.0933927978385112 0.0896754331543739 0.09136257562782 0.0957493377194839 0.0920556673667175 4 4|0 +|/ 13726381 13727087 13726709.6 13725552 13727359 + gene protein_coding_gene FALSE TRUE AT4G27440.1|AT4G27440.2 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase light-dependent NADPH:protochlorophyllide oxidoreductase B Identical to Protochlorophyllide reductase B, chloroplast precursor (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) (PORB) [Arabidopsis Thaliana] (GB:P21218;GB:Q42537); similar to PORA (Protochlorophyllide reductase A), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT5G54190.1); similar to NADPH:protochlorophyllide oxidoreductase A (GB:AAC49043.1); similar to protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea (GB:S20941); similar to NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum] (GB:BAB93003.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Light-dependent protochlorophyllide reductase; (InterPro:IPR005979); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.173974773479147 1.80089488877322 0.0994667723496661 1 0.812704308340122 23.2897317616524 0.173974773479147 0.0867483380074575
AT3G03060_at 2.09260459290015 2.07487977017335 2.60562301530197 2.1809812172825 1.83477464297155 1.53019720125501 1.75972433214111 1.80802030232103 1.16815133998259 1.81812780413708 1.62987278655273 1.65288226141963 1.50533411094241 1.26720249874711 2.18711563100647 1.54027001399677 1.88319680399391 1.22459734242889 1.10121937502563 0.199031202060829 0.201951924343014 0.202823134105709 0.194310775536125 0.19418386984392 0.197553087350652 0.199581580054829 0.195251559362941 0.198825659685916 0.193361573056994 0.195211393038158 0.200926822468397 0.195060138064988 0.197965475116682 0.194593658768783 0.205693094941836 0.20704775346155 0.200283193375444 0.207703531506937 3 3 + 694792 695337 695096.818 692063 695655 + gene protein_coding_gene FALSE TRUE AT3G03060.1 ATPase similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G36580.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G16930.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT2G18330.1); similar to Os02g0697600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047821.1); similar to Os02g0706500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047871.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAL87170.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.176448097286535 1.80070710055169 0.0994978660440418 1 0.812446020309691 3.47275485305221 0.176448097286535 0.0908717841604497
AT4G19530_at 8.30966246412776 8.66808092439959 8.54377788908003 8.50516544759653 8.99815653182195 9.04805649742464 9.94247176902348 9.78635341845904 9.52523610350816 9.82852970066174 10.4247184607378 9.9963536460897 9.89642410505824 10.0359794303011 9.67296346038346 9.66567248852643 9.21131172229112 9.79029549301514 9.9316314564381 0.150846699966100 0.144340060944347 0.146777257443282 0.153077217232151 0.139164068118515 0.140221136504883 0.140633955116790 0.139855310547715 0.148459673983525 0.145434487873953 0.143420003553563 0.139344766289282 0.138869092049220 0.145361363456581 0.140005053791535 0.139431468156800 0.147994807445938 0.142235707425613 0.144904194678758 4 4 + 10656505 10656991 10656741.364 10651754 10657292 + gene protein_coding_gene FALSE TRUE AT4G19530.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45060.1); similar to TIR-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81419.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.163968644295317 -1.80060123500271 0.0995153990032645 1 0.812300416435483 18.7744725865765 -0.163968644295317 0.0685300094200513
AT4G31140_at 5.45594169076894 5.4073476144247 5.32242530138183 5.14977516025648 5.53082448941352 5.76026179066823 5.77755237123077 6.30099803920367 5.05734839244464 4.83895209940468 5.54945002030595 6.14114972717201 5.75388984598704 5.94703065300954 5.80934288931575 5.92638561252231 5.50270530032413 5.57277590726389 5.43794195430719 0.181372015218205 0.178880452651009 0.179123808392361 0.179479446372419 0.174741814532436 0.182708990154849 0.175898934606773 0.176437543184125 0.174741814532436 0.183249528684824 0.179417921439182 0.179095764611915 0.180664092182397 0.177176720567481 0.185090938687538 0.175604695901891 0.176820072661216 0.178554208131079 0.179947974470227 4 4 + 15142635 15143164 15142901 15141294 15143397 + gene protein_coding_gene FALSE TRUE AT4G31140.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 5) ((1->3)-beta-glucanase 5) (Beta- 1,3-endoglucanase 5) (Beta-1,3-glucanase 5) [Arabidopsis Thaliana] (GB:Q9M088); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G58090.1); similar to Os02g0139300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045844.1); similar to Os08g0224500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061277.1); similar to putative 1,3-beta-glucanase [Oryza sativa (japonica cultivar-group)] (GB:AAP12947.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.184644426145868 1.80055339631679 0.0995233227460063 1 0.8122346221347 11.0315185037717 0.184644426145868 0.103660508933578
AT1G31730_at 7.63113004291017 8.07634317032351 7.55856005054638 7.48754721507033 8.0308987460794 7.0524014431782 7.82508451175529 7.80934237463809 6.90324103335813 6.77661334422062 8.08507084768434 8.05645838507591 8.1459410243299 7.34980226389126 7.72104732415285 7.8374544020198 7.2987606609935 6.71995277147537 6.86361843361288 0.201782520892849 0.191251485635412 0.197611480628643 0.193685369699201 0.191326745987474 0.206319974602471 0.194024438441246 0.197174141626096 0.202983326753426 0.195114590540643 0.196453744018845 0.193340882343955 0.192688257883807 0.204802400167254 0.198551864469908 0.191251485635412 0.217737760664217 0.203140584471273 0.192540687465163 1 1 + 11363307 11363748 11363561.909 11359623 11364269 + gene protein_coding_gene FALSE TRUE AT1G31730.1 epsilon-adaptin, putative similar to GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1), clathrin binding [Arabidopsis thaliana] (TAIR:AT1G23900.2); similar to Os01g0916200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045192.1); similar to Vesicle coat complex AP-3, delta subunit (ISS) [Ostreococcus tauri] (GB:CAL57153.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.250431764183733 1.80044368578779 0.099541496776627 1 0.812083736508789 14.9337310594877 0.250431764183733 0.186462873946078
AT3G53240_at 2.82805504871999 2.51701950950423 2.74010352951263 2.55226262412762 2.94874591385393 2.65515068770653 2.85966093880213 2.97465881440936 3.44829655193633 3.02745394909303 3.16429563641221 3.68787548428388 2.92157049033146 3.23228187334905 2.9012025862856 3.26140698721325 3.12211684958322 3.11552405105876 3.87038057122491 0.227643386148095 0.219526340625038 0.221039432816218 0.221137629376073 0.222435313662745 0.234021422872220 0.220058887930582 0.222406776534797 0.222594382883417 0.229536320504352 0.218408860932828 0.222934203470408 0.226334808051494 0.22053978610908 0.220152305407946 0.218725657577329 0.230887106743226 0.224998905066796 0.227395425413702 3 3 + 19749466 19749964 19749703.636 19744744 19750159 + gene protein_coding_gene FALSE TRUE AT3G53240.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25470.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74190.1); similar to Os04g0647900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054072.1); similar to H0821G03.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86057.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.171854500831080 -1.80012504244801 0.0995942985709377 1 0.811645530186986 6.07170443444594 -0.171854500831080 0.083255298519464
AT3G04560_at 6.89449196096848 7.31858483740876 6.53526852595962 6.78999432648414 6.87425076023123 7.49484591989372 6.67944914989612 6.83417252442391 6.61138280532054 5.98740279307064 6.18345251066995 5.73535401589388 6.06142197484909 5.5802803614639 5.6559795163876 6.06019922029448 6.23679848054934 5.79070330557809 6.38300208926232 0.20848311996097 0.219558786535817 0.209292433861094 0.220720075296662 0.20848311996097 0.220300412554563 0.216179903312210 0.217259825714189 0.224209200029794 0.215160476602794 0.212139105998693 0.20848311996097 0.216462263215497 0.224638515642487 0.208604460866816 0.210067981391206 0.222857098221798 0.218646514186014 0.211066730442673 3 3|0 -|/ 1227518 1228190 1227876.9 1227366 1229414 - gene protein_coding_gene FALSE TRUE AT3G04560.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53385.1); similar to Os02g0820600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048544.1) -0.211161812186257 -1.79987437006590 0.099635854936434 1 0.811300826423943 13.0477753685392 -0.211161812186257 0.139930258627990
AT1G02580_at 2.13135727136346 2.80297503167636 2.4647994023595 2.53523980966742 1.52183102999435 2.35567051418355 2.09334356360923 2.35177942782494 2.33372036387974 2.6623168377843 2.30098787889311 1.86845490971597 2.10578696227049 1.72567553745303 1.66866106058875 1.61431760751791 2.42085510788455 1.92052759605281 2.013061366976 0.225974581205869 0.230288650894810 0.231702227985565 0.222924386754376 0.222924386754376 0.225231036715452 0.226556568685719 0.222924386754376 0.231187171427672 0.229855484274283 0.233437715980602 0.228405632400863 0.228995651933128 0.229875876091970 0.224087222695006 0.222924386754376 0.226511747638872 0.224129453844403 0.241794321881231 1 1|0 +|/ 547817 548919 548344.429 544783 549202 + gene protein_coding_gene FALSE TRUE AT1G02580.1 MEA (MEDEA); transcription factor Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. Identical to Polycomb group protein MEDEA (Maternal embryogenesis control protein) (Protein FERTILIZATION-INDEPENDENT SEED1) (Protein SET DOMAIN GROUP 5) (MEA) [Arabidopsis Thaliana] (GB:O65312); similar to EZA1 (SWINGER), transcription factor [Arabidopsis thaliana] (TAIR:AT4G02020.1); similar to Polycomb protein EZ2 (Enhancer of zeste protein 2) (GB:Q8S4P5); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.254343245783449 -1.79953975199645 0.0996913523740973 1 0.810840724877992 4.42688676738173 -0.254343245783449 0.190996979653634
AT2G19980_at 2.34511258849392 1.95686150184571 2.08653243419526 1.66785359365795 1.68255191611528 1.82798840643301 2.19495079875528 1.80869668313978 2.42253310425374 2.26522724014464 2.42448761068372 2.04484315375148 2.30816795189005 1.9957536398607 2.2800536494606 1.8587572054295 2.34027516740342 2.06912926498779 2.21150499236961 0.201097504885954 0.205684353937168 0.200036125123136 0.198283560974667 0.197998267348396 0.208191244614865 0.201338439022925 0.196475738910682 0.196475738910682 0.203294365714822 0.201824282843977 0.204166545384306 0.201954763092951 0.199789236161393 0.208387362304998 0.201344228211150 0.202186476383893 0.200363276900821 0.202411569257597 2 2|0 -|/ 8634785 8635237 8634967.222 8634780 8635301 - gene protein_coding_gene FALSE TRUE AT2G19980.1 allergen V5/Tpx-1-related family protein similar to pathogenesis-related protein, putative [Arabidopsis thaliana] (TAIR:AT2G19970.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.197372731140443 -1.79945441290279 0.0997055106267272 1 0.810723390023102 4.17878777417422 -0.197372731140443 0.121923721692356
AT1G39350_at 2.19268548492569 1.91760220359762 1.86291486644285 1.74102614563071 1.61031332043639 2.20896969814144 1.93398905901299 1.88734989698259 1.96685614042208 2.52347697475456 1.81449068580809 1.90103332206282 1.73447765016395 1.82136158463254 2.12778600627253 1.89231975315644 1.52336521377265 2.24569327725292 1.93513449958368 0.199499006975785 0.195868589638837 0.198540563675372 0.202153304600811 0.193430299149282 0.195712406731888 0.195973577081593 0.203202122167611 0.196196650862946 0.195722502184328 0.191850764423254 0.19102898439016 0.197395577760852 0.192109242155778 0.192745329780979 0.193481123105056 0.198242074322437 0.191226821341388 0.194769445381545 1 0|1 /|- 14610306 14610925 14610782.429 14610274 14611094 - gene protein_coding_gene FALSE TRUE AT1G39350.1 unknown protein -0.193178627540036 -1.79888127778411 0.0998006444973364 1 0.809935444186475 3.93155057184313 -0.193178627540036 0.116229410499534
AT1G69860_at 0.82426189014801 0.744917085697907 0.413512237138237 0.390016675809364 0.787780440565459 0.652854780337527 1.0730752509216 0.795689475030368 1.33289682561882 0.502847772725783 0.928620487180764 0.404021258565178 0.754048407567203 0.83023886151402 1.52099746016622 0.815386516649647 0.745320583035197 1.10245179622264 0.878109708751969 0.213282649394433 0.212140048128304 0.207038168169178 0.211484413333935 0.217385280827586 0.208543464184336 0.207837612771023 0.208137763603380 0.218755286526238 0.228698384607070 0.211378239620558 0.222641327528914 0.215731969455090 0.207380305764896 0.217077326149584 0.207404030272201 0.215143014202761 0.219905894340284 0.213092743828057 1 1 + 26315238 26315737 26315452.818 26313291 26315837 + gene protein_coding_gene FALSE TRUE AT1G69860.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G69870.1); similar to Os12g0638300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067378.1); similar to putative nitrate transporter NRT1-5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83856.1); similar to Os01g0913300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045170.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.157713661494869 -1.79860202728022 0.0998470268029758 1 0.809551576165246 1.60639036632012 -0.157713661494869 0.0552679924812444
AT1G58190_at 0.395183895658251 0.833277597200262 0.781906418411867 0.833176687082617 1.06553285941227 0.824515723431236 0.627168397157549 0.410473689129198 0.595519491104426 0.479280758345414 0.622733847174989 0.30910892776651 0.145718639627434 0.684028838952254 0.663091880011969 0.234791250743737 0.632473617224926 0.1646835165776 0.079451601641445 0.220823239172047 0.216602731296600 0.224539564297512 0.229764881191632 0.220040176860855 0.221364464139151 0.221110471204325 0.216602731296600 0.231406510504038 0.21976404909459 0.220160162055618 0.218347768461539 0.225508587481282 0.216602731296600 0.219592404973106 0.218457910053274 0.23846110367729 0.222990432572778 0.220515941142988 1 1 + 21551171 21551629 21551355.636 21544385 21551661 + gene protein_coding_gene FALSE TRUE AT1G58190.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74190.1); similar to Os04g0647900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054072.1); similar to H0821G03.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86057.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.178542612513841 1.79765266449688 0.100004858582495 1 0.808246769830576 1.12981912433058 0.178542612513841 0.0947228243130093
AT3G44550_at 2.53447172898042 2.64562799124743 1.81699504243459 1.97688990151729 2.22127939831350 2.14758536957553 1.97540317296621 2.30517431983445 2.26458937508274 2.28723846546967 2.30808665958447 2.33313627843201 2.33719198124089 2.22971851196533 2.24304433323428 1.98701009581807 1.84315656356284 2.69550334058146 2.19493110288232 0.207002227606596 0.208864932315611 0.204876181835065 0.207879960839192 0.204876181835065 0.206109686678423 0.204876181835065 0.210619846298936 0.211357010699857 0.221482201891296 0.205453769945928 0.209641205627394 0.210119650253775 0.210774637384085 0.208857453895170 0.205693230063693 0.206363161943124 0.218527124304162 0.208387602693712 3 3 + 16150560 16151285 16150987.818 16149004 16152533 + gene protein_coding_gene FALSE TRUE AT3G44550.1 oxidoreductase, acting on the CH-CH group of donors similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT3G44540.1); similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT3G44560.1); similar to acyl CoA reductase [Simmondsia chinensis] (GB:AAD38039.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) -0.163147776278029 -1.79722167565422 0.100076585455502 1 0.807654531455574 4.45094117479068 -0.163147776278029 0.0674917403796457
AT4G19990_at 4.92154263927593 5.21139948868966 5.33791272645983 4.55183098760094 5.96387541491005 4.45694845643466 4.57879063700052 3.0759379047155 3.59550435476892 4.58119282199846 4.26502081190759 4.30882568352288 4.91585722418715 4.94192007977717 4.55334739498664 4.62444739934448 4.80810839591933 4.15599891564347 4.69936013504767 0.385186335539556 0.359591756098395 0.377054263945455 0.359330701412491 0.379896005060153 0.424266634401043 0.363701728855521 0.401288687369129 0.379327376038378 0.359339466412661 0.359330701412491 0.359330701412491 0.368972747400926 0.359330701412491 0.365598708427611 0.359330701412491 0.407106427262764 0.373520094693065 0.374736843633037 4 4 + 10834359 10834742 10834538.167 10832858 10835710 + gene protein_coding_gene FALSE TRUE AT4G19990.1 FRS1 (FAR1-related sequence 1); zinc ion binding similar to FHY3 (far-red elongated hypocotyls 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G22170.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.455197931576856 1.79710353322629 0.100096255357616 1 0.807492199794514 9.1941347029356 0.455197931576856 0.395812626302722
AT1G67865_at 12.9344890975553 12.9940644969189 13.7819237208669 13.8709249544481 13.5909780892591 13.5325502113337 13.7136722504723 13.7305394049968 13.2392319772697 13.6704156539532 13.2754868991492 12.975881377084 13.5776493370843 13.3369636944281 12.8013860103016 13.7511011741505 13.9554525334145 13.3995555097197 13.4108580507061 0.0648560775498065 0.0652076606964738 0.0694608252939156 0.0690789395668414 0.0676950790145525 0.0664343546755603 0.0689591790664889 0.066716438366118 0.0716405834406551 0.0648560775498065 0.0691077367151211 0.0677254491322135 0.0663038205708535 0.0698808567356778 0.0738553075223233 0.0648560775498065 0.0717139093590498 0.067094375643698 0.0654664831508306 1 1 - 25450150 25450315 25450228.818 25449952 25450400 - gene protein_coding_gene FALSE TRUE AT1G67865.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67860.1) 0.147459468882311 1.79707192887353 0.100101517861275 1 0.80744877525798 26.9308193420111 0.147459468882311 0.0213136793724748
AT1G07410_at 1.34686960745868 1.61151906474993 2.02314108560359 1.78570896983623 1.48664077369547 2.04574681577244 2.05187031100529 1.38186113954604 1.54796266971318 1.73647695556822 2.0177231035049 1.99989359794432 1.78170205340001 1.77687957972956 2.28841764134262 1.96721425921627 2.17672449595237 2.44432702149426 2.21928851915242 0.191877460753039 0.196881724561892 0.193166942255958 0.194892574563789 0.191877460753039 0.192102929638432 0.20501197043101 0.198589589015435 0.203178428233197 0.198737889466370 0.195701196328888 0.192500806488271 0.200612346422969 0.201576844454942 0.192774954125632 0.196869734846366 0.205248199964697 0.1976395322881 0.193116602063540 1 1|0 +|/ 2276314 2277076 2276753.7 2276267 2277151 + gene protein_coding_gene FALSE TRUE AT1G07410.1 AtRABA2b (Arabidopsis Rab GTPase homolog A2b); GTP binding similar to AtRABA2d (Arabidopsis Rab GTPase homolog A2d), GTP binding [Arabidopsis thaliana] (TAIR:AT5G59150.1); similar to Ras-related protein Rab2BV (GB:Q39434); contains InterPro domain GTP-binding nuclear protein Ran; (InterPro:IPR002041); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.229656775732689 1.79653215478945 0.100191435580262 1 0.80670718198872 3.66226285456728 0.229656775732689 0.163069034230437
AT1G01540_at 8.25854046529887 8.1073418229531 8.34407409956965 7.97749560780575 8.37066198490256 8.27476553766603 9.00742303619402 8.81744997668731 9.29759780106156 8.92208105538478 9.57592928602911 9.16633983309291 9.03891291192766 9.18277706168458 9.15335635045046 9.13047747349577 8.8759110549364 8.82076314976251 9.22690449909163 0.119269236231768 0.116239009720322 0.118205127218390 0.123485944368342 0.121647214701188 0.113559856677284 0.112334699169753 0.116955570471831 0.128946737086703 0.116760460146711 0.121735018668982 0.116652968185769 0.112326041868783 0.123003974874118 0.119728703634643 0.11232234551491 0.112280618024712 0.116153373019077 0.116441819423212 1 1 + 197560 198343 198051.455 195780 198641 + gene protein_coding_gene FALSE TRUE AT1G01540.1|AT1G01540.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G01330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048818.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G02630.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048818.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.168371123068777 -1.79527714873951 0.100400783525559 1 0.804983365709664 17.5281788207272 -0.168371123068777 0.0778797348082982
AT2G39620_at 0.915472660023357 1.08791468658188 0.772202294210132 0.742252702189356 0.883785696152681 1.01894762712158 1.05615069523521 1.43550750051235 0.913790973414966 1.31971527335958 1.07073215309562 1.02389751070268 1.17440086420091 1.3242508005097 0.772293454020799 1.07991672453167 0.850649905836445 0.956823040629758 1.05682130943114 0.19887925862769 0.193856934275670 0.191538560392017 0.194705774146128 0.204197769078001 0.19465020145659 0.198202803949738 0.188663824910474 0.189252924357558 0.195913858850238 0.189943286512508 0.193954543660732 0.191779781460182 0.198100196769199 0.193947136037057 0.192960662402676 0.190490537125338 0.196941979249123 0.188663824910474 2 2 - 16526055 16526516 16526310.636 16526046 16528556 - gene protein_coding_gene FALSE TRUE AT2G39620.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G09040.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE79399.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.167309800523691 -1.79490471792926 0.100462985320260 1 0.804471928658373 2.05322743713307 -0.167309800523691 0.0759892396544118
AT2G34820_at 2.25497942750039 2.06430356135846 1.72324357162316 1.73619631464026 1.68615583920413 2.18056341649584 2.10313879443786 1.88989986815836 2.44803798035655 2.01139522464973 2.12295848977659 2.07911060863374 1.83901358898752 1.93476303192587 2.03583925742656 2.20883366847962 2.16331836892118 2.17028278029971 2.09425358483381 0.203977721861020 0.203290420131637 0.204444073835754 0.200283082721793 0.213406792435970 0.203495074988358 0.210257178445998 0.203644933439525 0.203855195716751 0.199291184314798 0.200962883864749 0.206771562581631 0.213965339194088 0.202692639017013 0.206647366518412 0.203821570698531 0.210453294003147 0.219879904747723 0.204730212079478 2 2 + 14697043 14697604 14697237 14696703 14697957 + gene protein_coding_gene FALSE TRUE AT2G34820.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G30670.1); similar to Helix-loop-helix DNA-binding domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98598.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.180918958173301 -1.79490023913830 0.100463733561888 1 0.804465778525036 4.0817237179705 -0.180918958173301 0.0988738627715478
AT2G45200_at 7.17345909325104 7.26537896810265 7.07266335062119 6.63686361213424 7.2315217830618 7.22629617534263 6.87417964248837 6.97393953296648 6.29230058804388 6.6318294195398 7.2333340156522 6.97275408374998 6.65793925560003 6.74988115156638 7.20758957586501 6.72457991417508 6.88570288545815 6.56012660732221 6.59443929299085 0.21443358476155 0.207897210753595 0.201028194215102 0.200295071714167 0.198127048684648 0.211830749634598 0.201752590984747 0.198127048684648 0.210209561106278 0.199835345274016 0.204583434135403 0.204875939624709 0.198127048684648 0.204884847716856 0.204254245385506 0.200936545740799 0.208455630036624 0.206031741238568 0.204145635984678 2 0|2 /|- 18644768 18646101 18645225 18644582 18646882 - gene protein_coding_gene FALSE TRUE AT2G45200.1 GOS12 (GOLGI SNARE 12); SNARE binding Encodes a member of the GOS1 (Golgi SNARE) gene family. Identical to Golgi SNARE 12 protein (AtGOS12) (Golgi SNAP receptor complex member 1-2) (GOS12) [Arabidopsis Thaliana] (GB:O22151); similar to GOS11 (GOLGI SNARE 11), SNARE binding [Arabidopsis thaliana] (TAIR:AT1G15880.1); similar to Os02g0126800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045755.1); similar to PREDICTED: similar to p28 [Strongylocentrotus purpuratus] (GB:XP_797717.2); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.168947795201644 1.79489662760530 0.100464336920225 1 0.80446081928835 13.7468768712620 0.168947795201644 0.0789914487904929
AT1G28070_at 5.07890111072245 6.09328987652152 4.27570209086957 4.47594060890418 5.40912119321087 5.8409127036753 3.50969306184762 4.34175874593209 3.93941452315303 3.3188785226618 4.11702408662089 4.14384374223637 4.24242168011703 4.26565802061195 3.25187284193025 3.77050275529524 4.15358522549582 3.92463003343664 3.62429276396117 0.266118400565653 0.258773096288364 0.263636855954038 0.261690808434949 0.260188860060887 0.266294114862499 0.260558760523232 0.258773096288364 0.277291237164948 0.263786466329854 0.264654810180346 0.258864655492789 0.263094619025723 0.258773096288364 0.258773096288364 0.26039295216417 0.267562660059695 0.26535536261283 0.262673447237819 1 1 + 9783158 9783822 9783626.455 9782983 9783985 + gene protein_coding_gene FALSE TRUE AT1G28070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33510.1); similar to Humj1 [Humulus japonicus] (GB:AAP94213.1); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) 0.300336072684208 1.79452146010941 0.100527031978570 1 0.80394567903758 8.68377537469879 0.300336072684208 0.241524877403198
AT1G71530_at 1.58382387527979 2.01950943409723 2.29675398860581 2.20196882518138 1.54612895335955 2.00745460969299 1.47487218289822 1.40671819088963 2.05154847173893 1.66472791990161 2.26467527082568 1.61604996361680 1.76840494859939 1.39400504377252 1.97953064456865 1.60148481203907 1.99121071443787 1.88837513197251 1.76152810083333 0.180610932230606 0.175526351522489 0.179753739687504 0.178684649546011 0.174369944355729 0.180504485577846 0.173113116373293 0.173617131734191 0.176631059664977 0.177366564722083 0.183062346362725 0.180554341356134 0.175847941320252 0.180359640227807 0.173113116373293 0.174854142920358 0.177735771179800 0.176939574175659 0.182541706559317 1 1|0 +|/ 26945342 26945932 26945544.2 26943229 26946614 + gene protein_coding_gene FALSE TRUE AT1G71530.1|AT1G71530.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G33770.1); similar to Os08g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060831.1); similar to Protein kinase [Medicago truncatula] (GB:ABE89394.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.18943895441158 1.79412822045831 0.100592785299475 1 0.803405781966711 3.63660470602742 0.18943895441158 0.111653450364133
AT4G21100_at 3.87576163023665 4.38882947967825 3.86875225399095 3.86284118883158 3.67405037900608 3.17012344282146 4.02395213941881 3.76786356333472 3.78848787157736 4.00058631039746 4.21873571735226 4.19687690144362 3.90997592661865 3.96688495720153 3.77266871293166 4.06225142318434 3.27928776700978 3.88729298612584 4.06204707570558 0.209974245051398 0.209910939821132 0.209372123275132 0.203812216621852 0.20520597903227 0.211046082458829 0.203812216621852 0.222227204558407 0.207722617609241 0.209414436872941 0.203812216621852 0.211238034794497 0.214624690258427 0.214165334926375 0.212033047343974 0.210428869435276 0.212001123958763 0.220970476036380 0.205364267558633 4 4 - 11259025 11259463 11259262 11258772 11265474 - gene protein_coding_gene FALSE TRUE AT4G21100.1 DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. Identical to DNA damage-binding protein 1b (UV-damaged DNA-binding protein 1b) (DDB1b) (DDB1B) [Arabidopsis Thaliana] (GB:O49552;GB:Q570Q9); similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (GB:Q6E7D1); similar to UV-damaged DNA binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAB20761.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (High pigmentation protein 1) (GB:Q6QNU4); contains InterPro domain Cytochrome cd1-nitrite reductase-like, C-terminal haem d1; (InterPro:IPR011048); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871) -0.204393420290631 -1.79387867025209 0.100634532690319 1 0.803063193615605 7.76008203543661 -0.204393420290631 0.132111938197626
AT1G09060_at 7.58236359797607 7.74908001709634 7.29532704516938 7.24723041001322 8.16008422298356 7.76162535628773 7.40318616176216 7.67079006129506 8.09562077812176 7.35442597637053 7.41671187075832 7.26594701029183 7.37323734556803 7.53171355960089 7.04434721804044 7.25309826787085 6.65627659487951 7.724723539316 7.48921073710572 0.173301603791386 0.180481172190741 0.195586471203692 0.195463112391122 0.174702145315231 0.18456332241903 0.186256479275681 0.169755884757361 0.177431311029519 0.176409600726342 0.168987599099232 0.172222197399239 0.172240148972072 0.182799842997916 0.186310293473024 0.169971323897996 0.187538385856886 0.173121111349819 0.176745400267824 1 1|0 -|/ 2921472 2922322 2921939 2921067 2925765 - gene protein_coding_gene FALSE TRUE AT1G09060.1|AT1G09060.2|AT1G09060.3 transcription factor jumonji (jmjC) domain-containing protein|transcription factor similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00990.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC [Medicago truncatula] (GB:ABE86658.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95907.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00990.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC [Medicago truncatula] (GB:ABE86658.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95907.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.174225219497102 -1.79376908402767 0.100652870406955 1 0.802912758640156 15.0735489039013 -0.174225219497102 0.0883238464554408
AT3G10400_at 3.22782457308899 2.97488625339714 3.67511665760707 3.60294800643797 3.82026015987342 3.57341985463498 4.08347222869371 3.65024154605638 3.28395883107702 2.7808508690198 3.39602428427490 2.61922080484812 3.5873506873481 3.10254037367107 3.33381377962698 3.26700224371777 3.33056030338498 3.17217989103949 3.08538977528991 0.228004189023715 0.231360119198146 0.230099038006276 0.236713861902568 0.234393418313462 0.237410806885150 0.230941726976496 0.250253352682243 0.232690175764525 0.228349942581691 0.230108974561220 0.230921133701707 0.22556280885024 0.230174050750183 0.227719940624331 0.228288697792428 0.241480319734818 0.230861499056688 0.230050001849375 3 3 + 3232871 3233251 3233036.455 3232613 3233690 + gene protein_coding_gene FALSE TRUE AT3G10400.1 RNA recognition motif (RRM)-containing protein similar to ATSC35 ("Arabidopsis thaliana arginine/serine-rich splicing factor 35, 35 kDa protein"), RNA binding [Arabidopsis thaliana] (TAIR:AT5G64200.2); similar to Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (GB:Q5SP50); similar to Os09g0549500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063859.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.179925036761327 1.79344451020589 0.100707201106137 1 0.802467225537159 6.71409767886596 0.179925036761327 0.0975581862590037
AT4G17180_at 3.53375256292186 3.92376736192934 3.74303438126973 3.73190711861257 3.35145609275088 3.84768175151496 3.91546909447088 4.39399248578534 3.21787393938207 3.98793145870168 4.55271103153276 4.6783966069741 4.61181471981496 4.90985238443213 4.55459952030695 4.13008699426989 4.32672225975079 4.10794661923391 4.17850413804815 0.231689626970183 0.240344563886268 0.236879041861572 0.236214157196244 0.228742373076115 0.256596252212624 0.240487839835701 0.237591248964584 0.241939810776749 0.230509613653459 0.235252981208376 0.235113084976310 0.23008423941812 0.241965766401083 0.236010789910687 0.232636156192966 0.252264112574141 0.233173308229123 0.228742373076115 4 4 + 9647488 9647935 9647698 9646518 9648306 + gene protein_coding_gene FALSE TRUE AT4G17180.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G31140.1); similar to glycosyl hydrolase family protein [Brassica oleracea] (GB:ABD65105.1); similar to Os08g0326500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061551.1); similar to Os09g0272300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062739.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.208010440711158 1.79200338169927 0.100948755007389 1 0.80048951889788 7.94452566236531 0.208010440711158 0.137080694457617
AT4G30800_at 3.02266092387376 3.01152411820702 2.81012551786579 2.53260447741935 2.13670411108948 2.29903790315831 3.03200885381251 2.63197618530111 2.42557459457089 2.90475987279133 2.77910411137871 3.23981589416551 2.29179232983385 2.47405064047659 3.93407901198584 2.75097406547947 2.48542884777 2.29319386137198 2.61911086044394 0.195889699386521 0.199699509094867 0.193098685789295 0.210572303741585 0.199146789392904 0.197230155962463 0.200428733632636 0.207347625852491 0.203371662682328 0.195484532046517 0.195298366532109 0.192237112229322 0.200352989367719 0.197363029507685 0.192873939588252 0.194423638459846 0.202435765938970 0.192237112229322 0.197458836133402 4 4 + 15001532 15002352 15002029.182 15001140 15002677 + gene protein_coding_gene FALSE TRUE AT4G30800.1 40S ribosomal protein S11 (RPS11B) Identical to 40S ribosomal protein S11-2 (RPS11B) [Arabidopsis Thaliana] (GB:O65569); similar to EMB1080 (EMBRYO DEFECTIVE 1080), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G48930.1); similar to ribosomal protein S11 (probable start codon at bp 67) (GB:AAA32866.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) -0.174342390938173 -1.79180891858245 0.100981390123362 1 0.80022271210089 5.40001523862915 -0.174342390938173 0.0888362850939601
AT3G09290_at 1.16227672125801 0.966846090334386 1.13805772838548 1.47805799279244 1.34508127919949 1.57724290754865 1.20045036665464 1.20928758377737 1.49881267789214 1.05659621348955 1.14799132958400 1.19844609253567 1.88532551078522 1.48357140091046 1.32411205506380 1.15651684205492 1.56505804430732 1.70731396528596 1.48348541027764 0.190154569466731 0.181361268677875 0.186864380958630 0.181101121486740 0.179910321899076 0.179910321899076 0.188708787489920 0.184020151804859 0.188227169653543 0.183334823951158 0.179910321899076 0.184305615289892 0.183065437370764 0.183269686003165 0.180412516588833 0.180242930837450 0.182981988804819 0.184203164043905 0.182483667493329 3 3 + 2856171 2856613 2856352.636 2856147 2856665 + gene protein_coding_gene FALSE TRUE AT3G09290.1 TAC1 (TELOMERASE ACTIVATOR1); nucleic acid binding / transcription factor/ zinc ion binding encodes activation factor TAC1 which mediates telomerase activity similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G53820.1); similar to lateral shoot inducing factor [Petunia x hybrida] (GB:BAB58897.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.168569295494111 1.79152069036332 0.101029778690674 1 0.799827284708845 2.64958258655332 0.168569295494111 0.0788815029331728
AT1G19880_at 5.13721795484878 4.73804458256132 5.07409352085487 4.63726817603582 4.97884101938684 5.2384292514513 4.95513599251736 5.27181418295912 4.38656405737058 4.27333989210732 5.20024894235614 4.97966806766828 4.82406701317806 5.05374632149444 4.75032456259266 4.9209744974743 5.02785079862756 3.75768229873402 4.4625214584148 0.215746508650875 0.221714951058944 0.211064767168956 0.214515701646855 0.226049663762531 0.215982674200393 0.213999149291857 0.221934661731408 0.242507767931735 0.211302892939786 0.219199120113366 0.215005368619136 0.215310163972839 0.219584515840125 0.211177340830851 0.212821190948616 0.211218745451698 0.214473631586294 0.213842350785115 1 1|0 -|/ 6900666 6901553 6901194.25 6900406 6904060 - gene protein_coding_gene FALSE TRUE AT1G19880.1 regulator of chromosome condensation (RCC1) family protein similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to Os04g0662800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054159.1); similar to FOG: RCC1 domain (ISS) [Ostreococcus tauri] (GB:CAL58552.1); similar to OSJNBa0084K01.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE04840.2); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.198391661922674 1.79124808214197 0.101075564319242 1 0.799453316197785 9.59808664277522 0.198391661922674 0.124530464288567
AT1G07350_at 6.4790442648608 5.97193102763298 6.50473224701398 6.39456278757679 6.5938592366594 6.63538649984588 6.98317105828017 6.88548826478697 6.86708582782446 7.23351872422668 6.68822501787581 6.38773874539205 6.8741784140597 6.7772536915906 6.65155202634529 7.13198729821593 7.27926734363543 7.3320925923341 7.48291864276125 0.159226463342677 0.159980575632126 0.164036983391925 0.163159112288213 0.151396325871235 0.158943863926993 0.161074897354831 0.159871951726078 0.171433257138734 0.151396325871235 0.162835240520239 0.161984907605301 0.157078050644751 0.162891295708845 0.151431874843823 0.155471997875803 0.170284469075781 0.154579237411899 0.158354503589341 1 1 - 2257781 2258381 2258122.909 2257423 2260099 - gene protein_coding_gene FALSE TRUE AT1G07350.1|AT1G07350.2 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer serine/arginine-rich ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT4G35785.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95136.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to transformer serine/arginine-rich ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT4G35785.1); similar to Os03g0265600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049650.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95136.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.175997150769617 -1.79114930779469 0.101092158515066 1 0.799317822959448 13.5984192347247 -0.175997150769617 0.0916646862851328
AT2G39810_at 5.82476235899524 6.1807602902034 5.43780406518813 5.30130291536568 5.72024326794267 5.16088845334468 5.37692417358366 5.56076445895882 5.47705032136064 5.53389794862747 5.18004037514734 5.82465750466996 5.26448634453306 5.77462618513462 5.46131774701963 5.58833699795774 5.39829511454128 5.32147869642996 5.60318863544752 0.217422807579854 0.218004162055181 0.207960332736958 0.220595845901134 0.215009453371516 0.207960332736958 0.218515112167298 0.216892412864200 0.220206770432893 0.207960332736958 0.207960332736958 0.207960332736958 0.207960332736958 0.223926443114672 0.214206681643220 0.207960332736958 0.223724946292716 0.224882135094787 0.223144091527239 2 2 + 16624064 16624821 16624360.818 16619883 16625135 + gene protein_coding_gene FALSE TRUE AT2G39810.1 HOS1 (High expression of osmotically responsive genes 1) A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. Identical to E3 ubiquitin-protein ligase HOS1 (EC 6.3.2.-) (RING finger protein HOS1) (Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1) (HOS1) [Arabidopsis Thaliana] (GB:Q84JU6;GB:O22289); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAR07079.1); contains InterPro domain Iron dependent repressor; (InterPro:IPR001367) -0.196066954720501 -1.79110382600527 0.101099800336743 1 0.799255434795498 11.0777815008600 -0.196066954720501 0.121390433341049
AT2G38730_at 5.83501777567813 5.99969998891962 5.8400637089456 5.9689038303614 5.85108426193964 6.01334917057895 6.61754160018618 6.53507687642341 5.47931571721911 5.46864034057605 6.04419669721174 6.24608805147539 6.26876097611529 6.10827252935959 6.3081970426526 5.47572473808326 5.71107214368183 5.83607889386621 5.14089638645688 0.235198051130358 0.231665633233014 0.238804409113560 0.226648361017644 0.230782346241997 0.233833821862947 0.237931071807689 0.229987522577496 0.232487195889667 0.233191439625160 0.235430370359713 0.226591694935248 0.230434240228150 0.232289981583354 0.227096845306723 0.226591694935248 0.231140283657148 0.231939520193694 0.234110913311602 2 2 - 16199696 16201085 16200692.364 16199434 16201181 - gene protein_coding_gene FALSE TRUE AT2G38730.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin type [Medicago truncatula] (GB:ABE85500.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.154182125979812 1.79086122515903 0.101140570847596 1 0.798922668439467 11.7639670010323 0.154182125979812 0.0479740300862708
AT3G52610_at 5.8380832359119 6.2573745758213 5.48630115798665 5.97725100747222 6.54126785169086 6.14311802791616 6.59008870725309 6.6753787366851 6.01261070244918 5.81135114132126 5.37544776910171 5.58450615181364 5.89241068908419 5.96261573219195 5.33234151559454 5.87928819287016 5.89128407542073 5.23526181809042 5.42291864820272 0.256578816367682 0.263806376659466 0.274704287198516 0.269936426088306 0.262406354104636 0.284267532020761 0.267599471846009 0.263581724648373 0.270769948763430 0.267775231768107 0.256578816367682 0.256578816367682 0.258922080324723 0.27921467990617 0.266857359689713 0.256578816367682 0.290235206512043 0.263332035676992 0.272337884725334 3 3|0 +|/ 19522690 19523433 19523089.1 19521424 19523636 + gene protein_coding_gene FALSE TRUE AT3G52610.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32680.1); contains domain CoA-dependent acyltransferases (SSF52777) -0.204031236810755 -1.79082341823447 0.101146925870985 1 0.79887081216013 11.8851602410981 -0.204031236810755 0.132093504976120
AT1G59750_at 6.04300556435994 6.01406192103151 6.29250907178877 5.78747941061786 6.96404646875015 6.54584118316064 6.12030534025177 6.10672658617647 5.26329130681843 5.90255283032125 5.62644422723605 6.21378131703503 5.87440729111988 6.15261199769157 5.92085315216749 5.80474289295805 5.47249230036857 5.34583376950727 6.07502642582613 0.179346601512104 0.179638323427637 0.174413348064389 0.180002605176465 0.187239329395648 0.184266131899083 0.187274943797142 0.17789005255306 0.184434563610035 0.182999765665599 0.18304337578685 0.183449849360937 0.174901812670662 0.180388257409746 0.179694683163337 0.180392566131215 0.195757563522549 0.183167990381061 0.187489598126385 1 1 + 21987030 21987823 21987255.636 21983049 21988098 + gene protein_coding_gene FALSE TRUE AT1G59750.1|AT1G59750.2|AT1G59750.3 ARF1 (AUXIN RESPONSE FACTOR 1); transcription factor Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence. Identical to Auxin response factor 1 (ARF1) [Arabidopsis Thaliana] (GB:Q8L7G0;GB:O23664); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.1); similar to Os02g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047137.1); similar to Os04g0442000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052879.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.190441597406491 1.79067412210947 0.101172024829411 1 0.798666041784072 12.0084233046834 0.190441597406491 0.113607814878928
AT1G66970_at 11.6071369877735 11.9329124699434 11.4883228342808 11.5555093723123 11.2556731091970 11.0989709480602 11.3065796842627 11.3796765786961 11.9624869562177 11.3713993110786 11.6198338029122 11.7913021496731 11.3024145366633 11.5018003110812 11.3725335267475 11.4034162272392 11.205537073481 11.8861687496966 11.5440948240037 0.0726538235327655 0.0665765458918807 0.069846636003743 0.0683839921195517 0.0682051888582833 0.0675851506179906 0.0680670417093829 0.0691683491499295 0.0854653402029681 0.0709653641855895 0.068209599025822 0.0665765458918807 0.0683539514942948 0.0700559524734965 0.0699257413150308 0.0673643298658778 0.0696505488730963 0.0700638489127152 0.071824790779522 1 1 - 24996449 24997001 24996707 24996216 24999780 - gene protein_coding_gene FALSE TRUE AT1G66970.1 glycerophosphoryl diester phosphodiesterase family protein Identical to Probable glycerophosphoryl diester phosphodiesterase 3 precursor (EC 3.1.4.46) (GPDL3) [Arabidopsis Thaliana] (GB:Q7Y208;GB:Q9FZI1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66980.1); similar to MRH5/SHV3 (morphogenesis of root hair 5), glycerophosphodiester phosphodiesterase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26690.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); similar to B0806H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67272.1); similar to Os04g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053060.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) -0.161287632059793 -1.79061049530007 0.101182723187605 1 0.798578775647073 23.0212824952091 -0.161287632059793 0.0648764414178237
AT4G11175_at 9.08977117611273 9.21286930427184 8.84080745143724 8.64047792750014 9.43896471542758 8.62276273988004 10.1872584971389 9.8378766525533 9.3281575604757 9.53637743135958 9.9607997281445 10.1758537391767 9.41175295356945 9.75186851484615 10.1214389633816 9.7826727052293 9.04210056210813 9.5279082261582 9.56478968739696 0.170116651005146 0.167000380506479 0.172692899052087 0.169422850149313 0.157564800449735 0.193692175853173 0.162139437660857 0.157564800449735 0.168083608736116 0.160854482477952 0.166289111946849 0.164831398425337 0.164507933204086 0.167362186708644 0.163302921146422 0.162381420242077 0.172500880388942 0.173119672885097 0.164981754861523 4 4|0 +|/ 6818197 6818760 6818574 6818083 6819038 + gene protein_coding_gene FALSE TRUE AT4G11175.1 translation initiation factor IF-1, chloroplast, putative Identical to Translation initiation factor IF-1, chloroplast precursor [Arabidopsis Thaliana] (GB:O82499;GB:Q56YK9;GB:Q8GY59;GB:Q9T016); similar to Translation initiation factor IF-1, chloroplast precursor (GB:Q94KR7); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain S1, IF1 type; (InterPro:IPR006196); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Translation initiation factor IF-1; (InterPro:IPR004368) -0.225416417312634 -1.79033269684629 0.101229444902734 1 0.798197784748589 18.8329690499506 -0.225416417312634 0.158940925736487
AT1G48660_at 1.38190392284630 1.82632493531679 1.04425060052146 1.80295168238482 1.25613588021952 1.45776788516059 1.30562415695016 1.49954076497908 1.88762015465527 2.16345711113712 1.73109014868172 1.13880668785705 1.72789312876311 1.79248818601829 1.44069597780227 1.75673075746241 1.67400046515263 1.59915429585111 1.78761056760837 0.192252093708942 0.182005736389575 0.187056807443997 0.19079610646003 0.184099431276493 0.184359345034884 0.190585378053891 0.182252799216867 0.187082543262242 0.18535980941406 0.190885880383929 0.183305964408132 0.189978627964556 0.188372413391001 0.184618709137171 0.187621551388797 0.187460810039602 0.190992219567331 0.194846317545992 1 1 - 17999629 18000102 17999822.455 17999616 18001640 - gene protein_coding_gene FALSE TRUE AT1G48660.1 auxin-responsive GH3 family protein similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT1G48670.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT1G23160.1); similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G51470.1); similar to Probable indole-3-acetic acid-amido synthetase GH3.11 (Auxin-responsive GH3-like protein 11) (OsGH3-11) (GB:P0C0M3); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) -0.225846877401582 -1.78887711520413 0.101474573465592 1 0.79620199166923 3.22373084542175 -0.225846877401582 0.159679525801121
AT4G16430_at 7.45867122242337 7.95374719794932 7.85540129969789 8.0282820122189 7.67296263285016 7.35869597181351 6.79174586642337 7.29347458545218 6.78478290329035 6.68396513515995 6.77645222426683 7.05758696625786 6.89927577250765 6.80741398046998 6.2929413018845 6.83754047676106 6.80055988731775 6.65792050733551 6.64880344136248 0.226820009237288 0.213240112474219 0.227366053328506 0.213240112474219 0.217158539961975 0.224023215630565 0.213240112474219 0.21459473974595 0.224419845572637 0.228359903438237 0.218458337702939 0.213240112474219 0.213240112474219 0.228613532131089 0.227341663128525 0.220530796014899 0.213240112474219 0.219147081814973 0.213946995594856 4 4 + 9268444 9268990 9268770.818 9267283 9269201 + gene protein_coding_gene FALSE TRUE AT4G16430.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46510.1); similar to Os01g0705700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044012.1); similar to Os01g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042524.1); similar to bHLH protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81265.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.207393328706135 1.78813157220171 0.101600336054855 1 0.79518007123502 14.2876535400391 0.207393328706135 0.136864600503761
AT1G01160_at 6.8932094800854 6.81060052570917 7.11832784903362 7.2531253925498 7.7232782870237 7.23856023599684 7.39129680692529 7.20722283450052 6.76107488962507 6.45734488627126 6.19474741058067 5.75081210749729 6.43480129563849 6.17581422587488 5.90030183020877 6.18781235828473 6.28974541654336 5.82758041229401 6.90214739984071 0.170605130584482 0.170442487214956 0.182111425503276 0.173550544509951 0.175482751509307 0.181647435053321 0.185250984961356 0.171910365039317 0.178724329313714 0.172388548803540 0.170856740692946 0.177752991276604 0.180407705322588 0.182963917386313 0.188893340406902 0.169385963912711 0.188280105528405 0.185926710022247 0.178099155891515 1 1|0 +|/ 72606 73597 73336.7 72339 74096 + gene protein_coding_gene FALSE TRUE AT1G01160.1 GIF2 (GRF1-INTERACTING FACTOR 2) Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA similar to GIF3 (GRF1-INTERACTING FACTOR 3) [Arabidopsis thaliana] (TAIR:AT4G00850.1); similar to Os12g0496900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066805.1); similar to Calcium-responsive transcription coactivator (ISS) [Ostreococcus tauri] (GB:CAL54353.1); similar to Os11g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068275.1); contains InterPro domain SSXT; (InterPro:IPR007726) -0.176956656892254 -1.78745015128982 0.101715405977251 1 0.794246231193944 13.6054814801585 -0.176956656892254 0.0938060732872679
AT4G19110_at 8.52379516920173 8.38109658340143 8.3442835132056 8.22340839373209 8.94278328345282 8.09865735488003 8.3151242519815 7.9447199319168 8.2289314968798 8.13639032664065 8.77928868234975 8.6447007004789 8.75267562989933 8.25375483690854 8.37686997665579 8.4959193050076 8.55385955188552 8.21925786545539 8.12713764775527 0.129915184800150 0.125092224851873 0.126332100435538 0.131901114067602 0.126351854080771 0.127601892833008 0.126603376255977 0.126893531857371 0.131300459135430 0.123747173689543 0.121687677806608 0.126778843662645 0.125313643413752 0.127838834758593 0.122424507735239 0.124166473497869 0.130457201163439 0.125845424773411 0.124524487529819 4 0|4 /|- 10454825 10455447 10455154.111 10454508 10459339 - gene protein_coding_gene FALSE TRUE AT4G19110.1|AT4G19110.2|AT4G19110.3 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G45430.1); similar to Os06g0116100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056617.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAO25540.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G45430.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAO25540.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.228243406840233 1.78740568301252 0.101722919342060 1 0.794185296747121 16.6835805480575 0.228243406840233 0.162774597170386
AT3G62650_at 10.7294125777276 10.9786850924734 10.9328854381072 10.9965364293901 11.4343347573309 11.5131767486490 10.2568546278687 10.4612933335414 10.6375248971627 10.2102175814611 10.2140399039916 9.84379225638011 10.4487301286567 10.3630085437986 9.4130367970607 10.3588737744905 10.1545794887707 10.2234303560879 10.4240702862937 0.0987218430131133 0.09220137670031 0.0998253233578423 0.0960654116678427 0.0960168730062646 0.0999061874777217 0.0956477990577146 0.0962144474303387 0.102981617227578 0.100076410200388 0.093863725548827 0.0970844389641452 0.09220137670031 0.0947223925081063 0.101685069807307 0.0934419462773357 0.103157849903032 0.100203701248847 0.0995823475666328 3 3 + 23179561 23179936 23179753.182 23179037 23180163 + gene protein_coding_gene FALSE TRUE AT3G62650.1|AT3G62650.2 binding similar to binding [Arabidopsis thaliana] (TAIR:AT2G47485.1); similar to At2g47485 [Medicago truncatula] (GB:ABE84411.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.158085376657631 1.78729335770588 0.101741900082547 1 0.79403138187991 21.1885843728663 0.158085376657631 0.058481078038873
AT4G33300_at 10.8138109738025 11.0186507264625 11.1018627837286 11.1084429225344 10.7936580037591 10.6834131144801 9.74833835050724 9.82521895717604 10.3458763430805 9.82570123866045 9.81163363072542 9.47935791396313 9.63049781366478 9.9560410304081 9.14331387751657 9.5015881555246 9.91476459900614 9.8922272985055 9.62686526456436 0.0830729833377981 0.083034970395651 0.0828431092912576 0.0824191207465148 0.0846622761563822 0.0861709709429304 0.0836694647217933 0.0824130561701729 0.0914365135225418 0.0813185338182067 0.0831737289003953 0.0855286083472342 0.0837863064311376 0.085288254633187 0.0829876741878555 0.082984710349985 0.0877494334704879 0.0893385713074374 0.0818035940339706 4 4 - 16051170 16051650 16051432.455 16050460 16056530 - gene protein_coding_gene FALSE TRUE AT4G33300.1|AT4G33300.2 ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G04720.1); similar to ADR1 (ACTIVATED DISEASE RESISTANCE 1) [Arabidopsis thaliana] (TAIR:AT1G33560.1); similar to ADR1-L3 (ADR1-LIKE 3), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G47280.1); similar to Probable disease resistance protein At4g33300 (GB:Q9SZA7); similar to Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABE81238.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99732.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) 0.151851605975503 1.78619505250579 0.101927661359999 1 0.792526675484476 20.4361706400643 0.151851605975503 0.0424132888898255
AT1G31820_at 8.18369592174004 8.47299919627895 9.4197237555674 9.56515576187169 9.38354730135528 8.9279987072756 9.38646316877422 9.3258335237474 7.99556176531603 8.46066521431545 7.57337729789173 4.08474749180803 8.24151291832791 7.94944574517019 4.68415325190501 8.53825347208135 8.923629483684 8.19323786351794 7.8834220930747 0.190663021555099 0.179574860687831 0.186485444184282 0.186648295411726 0.182328051589351 0.189230830419508 0.187556243753848 0.184064417776176 0.188404629948966 0.183221236713014 0.184938246823225 0.206920700171097 0.182145788490045 0.183840106078156 0.209260592426473 0.180278383663610 0.184151258102741 0.186907694851698 0.182394686149222 1 1 - 11416728 11417241 11416954.818 11416432 11418260 - gene protein_coding_gene FALSE TRUE AT1G31820.1 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31830.2); similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT5G05630.1); similar to putative amino acid permease [Oryza sativa (japonica cultivar-group)] (GB:AAR10855.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97257.1); similar to Os03g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050538.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -0.178906619069056 -1.78500999529877 0.102128440801835 1 0.790903640536095 16.7765576911348 -0.178906619069056 0.09728802114268
AT2G38150_at 1.14059912527002 1.05802943296397 0.588868127212359 0.705517207139987 0.401630197587578 0.602682450826831 0.639387912510907 1.13404153891358 0.404871783460974 0.988932434394258 0.597625461290046 0.525141913615586 0.953683497306577 0.412584337220854 0.997659514350463 0.689586814679311 1.16083871064732 0.680466899012751 0.674896833537695 0.245683410064321 0.249355468897101 0.250781520715285 0.252637612738149 0.242681701251581 0.251027973744594 0.242681701251581 0.256959528102182 0.251479380041077 0.24928984128944 0.246519170258538 0.253339840133126 0.246800251877466 0.248507586180245 0.244158426672607 0.245342559089987 0.259566908778502 0.251027247806717 0.245833809845237 2 2 - 15988781 15989339 15989059.364 15988778 15989995 - gene protein_coding_gene FALSE TRUE AT2G38150.1 transferase/ transferase, transferring glycosyl groups similar to alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G01250.1); similar to OSJNBa0074L08.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41203.1); similar to Glycosyltransferase sugar-binding re (GB:ABD28693.1); similar to Os04g0529700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053382.1); contains InterPro domain Glycosyltransferase sugar-binding region containing DXD motif; (InterPro:IPR007577); contains InterPro domain Alpha 1,4-glycosyltransferase conserved region; (InterPro:IPR007652) -0.177854315169271 -1.78482778207432 0.102159344283667 1 0.790654132571001 1.50472720437632 -0.177854315169271 0.0956554047072227
AT4G11860_at 7.74706138330417 7.91909093873726 8.1007001164875 7.86639500517492 8.68104897602662 8.17652182661345 8.02556692692379 8.01387678836837 7.63884424611866 7.90281618187404 7.06049637535079 7.22587562676116 7.25932000336196 7.1448701682817 6.86432616569945 7.72511898957572 6.97796648135311 7.01669393494357 7.86226495729987 0.167164192839616 0.181591876952395 0.16638914695239 0.173094268817728 0.171487966174163 0.168689013175394 0.178157127874359 0.175108640718584 0.176244927809085 0.174656589154577 0.172743830468837 0.167270714993813 0.168575564958931 0.182493260826514 0.192029201527043 0.168676024748662 0.194985967892728 0.174854573894028 0.170181387694335 4 0|4 /|- 7134258 7135505 7134826 7134078 7138497 - gene protein_coding_gene FALSE TRUE AT4G11860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22960.1); similar to hypothetical protein LOC505719 [Bos taurus] (GB:NP_001039389.1); similar to Os06g0712400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058557.1); contains InterPro domain Protein of unknown function DUF544; (InterPro:IPR007518) -0.181103760928019 -1.78445622898200 0.102222386239328 1 0.790145397897855 15.5466037101696 -0.181103760928019 0.10078519346403
AT1G24600_at 2.64698475035800 2.26320832816772 2.86191758472742 3.01014015412664 2.68770670983978 2.83346370707645 2.73139383922168 2.62034748015574 3.12325003248296 2.64868290425238 2.75193141087576 2.63843962281387 3.36200832422563 2.91745656877725 2.67181252987658 2.83462230901685 3.51615631348401 3.31264892133878 3.07412787901914 0.207407383953524 0.219570322142212 0.214179700714713 0.221211270714549 0.223235077625521 0.211978009435979 0.215611854450165 0.213031514361192 0.204811321700685 0.206281048429375 0.209061841634746 0.210847603482475 0.208399259963082 0.212022572066738 0.211212207918153 0.221416824754075 0.207832272629009 0.213807618415672 0.206644573276079 1 1 + 8720366 8720555 8720460.364 8720295 8720707 + gene protein_coding_gene FALSE TRUE AT1G24600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67920.1) 0.167385500466527 1.78442842426828 0.102227105325845 1 0.790107329525023 5.68155603852714 0.167385500466527 0.0779381546811223
AT1G71230_at 3.08663254800064 3.4533813379801 3.34507927048986 3.54251250859177 3.43834565683983 3.45631329666748 2.73377581177736 3.55168215814133 2.87684241408211 3.01540456926560 3.51392591130872 3.48440221187351 3.26915148737233 3.21445900741132 2.9574828372998 3.21937681301307 2.82814619780055 2.89532547340741 2.99618193929014 0.216054013977929 0.206772992616052 0.209824486488249 0.219364989554647 0.209405581430192 0.207695775350743 0.209054416000685 0.212489111420167 0.213368843451266 0.214083758483535 0.207150250698878 0.21152255473117 0.208577359924565 0.225988567828328 0.215973858788077 0.209844991561583 0.213473162050781 0.220189352309432 0.215079534759368 1 1 + 26856819 26857885 26857321.455 26856123 26858058 + gene protein_coding_gene FALSE TRUE AT1G71230.1 AJH2 (COP9-signalosome 5B); protein binding Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses. Identical to COP9 signalosome complex subunit 5a (EC 3.4.-.-) (Signalosome subunit 5a) (Jun activation domain-binding homolog 2) (CSN5A) [Arabidopsis Thaliana] (GB:Q9FVU9;GB:O82523); similar to AJH1 (COP9-signalosome 5A) [Arabidopsis thaliana] (TAIR:AT1G22920.1); similar to JAB [Lycopersicon esculentum] (GB:AAG43411.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964) 0.224584410364467 1.78419565916721 0.102266618567984 1 0.789788654729931 6.3937620152186 0.224584410364467 0.158869288667388
AT3G16280_at 2.00354471271203 1.86860860305151 2.29608504968394 2.00719060716261 2.81703293524807 2.21714550927381 2.34103965831960 2.74583843619174 2.46927698585463 2.53177123250272 2.56305185905730 2.67174397785901 2.89136157209870 2.56593679510185 2.30044420256593 3.03207966878071 2.58003930823252 2.77904216173792 2.06053195419201 0.232570423797922 0.225856456184378 0.228781218367313 0.226171626202058 0.222140661680607 0.228832106674373 0.229169777107449 0.231063805476629 0.22978632277279 0.229643177677819 0.224676186043559 0.224337648162671 0.230918161469779 0.223041515198193 0.225851905625360 0.222140661680607 0.234620280871416 0.228444608516853 0.228719397143906 3 3 + 5518515 5518981 5518745 5518337 5519252 + gene protein_coding_gene FALSE TRUE AT3G16280.1 DNA binding / transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to TNY (TINY), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G25810.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE80929.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.206854029218088 1.78354634124198 0.102376917394090 1 0.788899795617607 4.80047193930326 0.206854029218088 0.136854920147331
AT1G66570_at 2.34453688888992 2.93635659664527 2.70269932669995 2.55267402840182 1.93156660258527 2.39919229390016 2.35840164848838 2.20797854462050 2.58522169064538 2.05480121083014 2.23789965678900 1.84587745059419 2.07572732840113 2.09334757627574 2.02506843156930 1.96563302808224 2.20256612819303 2.06976520948239 2.59292844935147 0.220235511267732 0.231027097001023 0.220235511267732 0.231217942163521 0.229057612366745 0.222903944444919 0.227998418954734 0.22957391298046 0.220235511267732 0.229884069345171 0.225058284874325 0.239284703965014 0.228622921394217 0.226592212969414 0.227629153188428 0.223198385295113 0.225010364928377 0.220235511267732 0.228599327800968 1 1|0 -|/ 24838988 24839914 24839405.889 24838914 24840985 - gene protein_coding_gene FALSE TRUE AT1G66570.1|AT1G66570.2|AT1G66570.3 ATSUC7 (SUCROSE-PROTON SYMPORTER 7); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter|ATSUC7 (SUCROSE-PROTON SYMPORTER 7); carbohydrate transporter/ sugar porter Identical to Probable sucrose transport protein SUC7 (Sucrose permease 7) (Sucrose- proton symporter 7) (SUC7) [Arabidopsis Thaliana] (GB:Q67YF8;GB:Q9C6H8;GB:Q9C716); similar to ATSUC9 (SUCROSE-PROTON SYMPORTER 9), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G06170.1); similar to ATSUC8 (SUCROSE-PROTON SYMPORTER 8), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G14670.1); similar to ATSUC6 (SUCROSE-PROTON SYMPORTER 6), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43610.1); similar to sucrose transporter SUC2 [Brassica oleracea] (GB:AAL58072.1); similar to sucrose carrier [Ricinus communis] (GB:CAA83436.1); similar to sucrose transporter SUC1 [Brassica oleracea] (GB:AAL58071.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002)|Identical to Probable sucrose transport protein SUC7 (Sucrose permease 7) (Sucrose- proton symporter 7) (SUC7) [Arabidopsis Thaliana] (GB:Q67YF8;GB:Q9C6H8;GB:Q9C716); similar to ATSUC9 (SUCROSE-PROTON SYMPORTER 9), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G06170.1); similar to ATSUC8 (SUCROSE-PROTON SYMPORTER 8), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G14670.1); similar to ATSUC6 (SUCROSE-PROTON SYMPORTER 6), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43610.1); similar to sucrose transporter SUC1 [Brassica oleracea] (GB:AAL58071.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) -0.205891769599915 -1.78354237732740 0.102377591070826 1 0.788894369870083 4.66691043367009 -0.205891769599915 0.135608957583072
AT4G21323_at 0.380696548144979 0.732127226881236 0.441148507649132 0.194702742408345 0.450061166990238 0.258235046849545 0.806754191754938 0.412215809130869 1.00315488379592 0.782311908147496 0.919458242711572 0.889735901725233 1.0731425235621 0.688441558107547 0.493801411428224 0.369884691194194 0.726692231646496 0.468160738155595 0.692374104740262 0.218801623111610 0.220038530318091 0.220003778169732 0.218431974624618 0.219857825204824 0.223123394574524 0.219080583819332 0.218991957165793 0.222139333673929 0.225702920309233 0.219446091643947 0.221981804279716 0.218431974624618 0.225447258847864 0.221211368688289 0.218431974624618 0.221270805748723 0.228466250467598 0.218880441494350 4 4 + 11345078 11345601 11345361.636 11342504 11345642 + gene protein_coding_gene FALSE TRUE AT4G21323.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32950.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10550.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.184596940624273 -1.78346650603190 0.102390486354119 1 0.788790519541582 1.22429846891496 -0.184596940624273 0.106213395389219
AT4G26680_at 2.68123316997175 2.95357714691270 2.92376050160654 3.01371615745371 2.64278326029831 3.13165060685755 2.64913406668351 3.13547943104868 2.73369793601386 2.55940600319703 2.88485149898185 3.07706297664342 3.15070294394495 2.86491600982489 2.87271963262779 2.84555556419632 2.86122280493170 2.84986389227367 2.49782074170154 0.188492761670766 0.188719429935339 0.195015642613401 0.197046387173197 0.190718205067658 0.197869472100509 0.185790266311131 0.197961209188948 0.191053783602725 0.191564189471843 0.187580908458499 0.189219719219311 0.193720214642595 0.204901490094631 0.192814676189369 0.185790266311131 0.19448128571376 0.187995411407339 0.187898915468875 4 4 + 13455857 13456314 13456053.182 13454859 13456636 + gene protein_coding_gene FALSE TRUE AT4G26680.1 pentatricopeptide (PPR) repeat-containing protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to Protein prenyltransferase [Medicago truncatula] (GB:ABE94182.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.20100434984523 1.78314550724810 0.102445060461043 1 0.788351170885781 5.65283519713687 0.20100434984523 0.129246041951729
AT1G59670_at 0.795254485337906 0.94651520785413 0.90900160170189 1.73547005988797 1.34130695539334 1.16980471210202 1.2645384143864 1.39401768899366 0.625599075967418 1.16255474919081 0.767068775161248 0.99518341719855 1.46602329897030 1.19173665650907 1.42926188225972 1.26276868696779 1.57544934933465 0.90298458721383 1.07116690752781 0.19890704060204 0.201465237951778 0.203588494711708 0.199158885487255 0.224027506872152 0.198843191774333 0.205085457054046 0.20643829039624 0.210253685546424 0.20000885035303 0.204166069096469 0.199745954975599 0.200246321755400 0.210489752570935 0.195543356288575 0.198063158015226 0.20207659856504 0.198613664484720 0.195861518500649 1 1 + 21933839 21934868 21934472.364 21933675 21935031 + gene protein_coding_gene FALSE TRUE AT1G59670.1 ATGSTU15 (Arabidopsis thaliana Glutathione S-transferase (class tau) 15); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU16 (Arabidopsis thaliana Glutathione S-transferase (class tau) 16), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G59700.1); similar to glutathione S-transferase 1 [Papaver somniferum] (GB:AAF22517.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.217258526967416 1.78307667057478 0.102456767058129 1 0.788256959854668 2.27044688700578 0.217258526967416 0.150080186348701
AT2G19760_at 8.80101982716574 9.13590015547174 9.2835054723811 9.26628683926114 9.47125006532085 9.01504407507015 9.50030525389698 9.34910543020057 9.58842209012763 9.31194458281164 10.0380626626930 10.2165548587432 9.51769314328593 9.37732174803665 9.97696714702526 9.7324295118447 9.34505041742384 9.80067448322339 9.45063098172028 0.138475573877949 0.14300719502676 0.143719677512249 0.137023664824695 0.139274493391231 0.144120987428751 0.134781625732681 0.140001108111943 0.142265424443624 0.137547337409278 0.138953857636927 0.138678680054187 0.140162868010311 0.14948584168902 0.133055235765938 0.135927938023437 0.137869298700129 0.139363309445750 0.134141074467982 2 2|0 -|/ 8524175 8525111 8524515.625 8523869 8525249 - gene protein_coding_gene FALSE TRUE AT2G19760.1 PFN1/PRF1 (PROFILIN 1); actin binding first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues. Identical to Profilin-1 (Allergen Ara t 8) (PRO1) [Arabidopsis Thaliana] (GB:Q42449); similar to PFN2/PRF2/PRO2 (PROFILIN 2), actin binding / protein binding [Arabidopsis thaliana] (TAIR:AT4G29350.1); similar to profilin-like protein [Solanum tuberosum] (GB:ABB16985.1); similar to Profilin (Allergen Fra a 4) (GB:P0C0Y3); contains InterPro domain Plant profilin; (InterPro:IPR005455); contains InterPro domain Profilin/allergen; (InterPro:IPR002097) 0.181350320652927 1.78284162545630 0.102496748776576 1 0.787935287024215 18.8282655388899 0.181350320652927 0.101414552371381
AT3G06010_at 6.07342220346994 6.16602042914464 6.29397249520444 6.14438696087732 6.9050351211663 6.02002885148381 6.46011853918449 6.66755474860914 5.26598138253366 5.64185608365645 6.12604731611336 6.61218191766578 6.01339901735308 6.33124670582032 6.13961132924393 6.37781923395016 5.59727138526424 5.25557995651391 5.90620381458236 0.210671835573578 0.215893197692750 0.211377375514579 0.210272865676743 0.212723320115956 0.212579122523655 0.210154794816096 0.207728900561462 0.223852369419724 0.218872298237713 0.205962432825884 0.210876596189007 0.213331901227492 0.213258295072444 0.210469829176406 0.205305392131541 0.209730553567674 0.215037540823825 0.209090446186153 3 3 - 1802469 1802948 1802780.182 1802441 1807290 - gene protein_coding_gene FALSE TRUE AT3G06010.1 homeotic gene regulator, putative similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT5G19310.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform 20 [Canis familiaris] (GB:XP_867832.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b isoform 10 [Canis familiaris] (GB:XP_859981.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform 17 [Canis familiaris] (GB:XP_867807.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.225520528948678 1.7827128856291 0.102518653720978 1 0.787759108231698 12.1719799359749 0.225520528948678 0.160224335171098
AT4G29220_at 8.56413516002505 8.5179949775551 8.53459987484551 8.65814293967436 8.79108591924378 8.58694319808533 8.52536862313757 8.5252635610829 8.39968355418833 8.46915340143438 8.55313788615644 8.65176155872399 8.66260758292251 8.45042484153087 8.4708644797452 8.74977129500275 8.6852557859248 8.66173886559754 8.38317556018453 0.128295261412714 0.123246633037718 0.130415695542944 0.135613113944582 0.123246633037718 0.123246633037718 0.134842866568162 0.132770393805039 0.132841545133909 0.128429829689148 0.126128145339817 0.126934690245526 0.125527890381795 0.132067233508407 0.134863272752034 0.123746841513381 0.134660975611490 0.126898938660782 0.127850701960565 4 4|0 -|/ 14403699 14404468 14404148.1 14403353 14406598 - gene protein_coding_gene FALSE TRUE AT4G29220.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G32840.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE84859.1); similar to Phosphofructokinase, putative [Medicago truncatula] (GB:ABE90419.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE80791.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.151430092096761 1.78259659233886 0.102538444552939 1 0.787599967903676 17.101958177816 0.151430092096761 0.0420583600573874
AT1G49400_at 5.97898921925198 6.04903157664383 5.992519889562 5.94744597715393 6.65939175229494 5.68752407585468 6.67152773629396 6.67602048638393 4.79280940057712 5.37140353192739 6.19481935221368 6.16764574783684 5.72203092166408 5.68432730660296 6.31562858819428 5.52673645694888 5.84253688975767 5.54018130524954 5.24587971083003 0.230161224610433 0.214877297153762 0.215068099180999 0.218076052628929 0.217063493691803 0.217955449045565 0.228037792229036 0.222216322758419 0.228727439803126 0.216903537139318 0.216042602153349 0.215795969509062 0.221259348625483 0.223203451942832 0.217435947276968 0.216161391431756 0.223372417737465 0.220968993561020 0.221615431854798 1 1 + 18286826 18287196 18286937.091 18286700 18287870 + gene protein_coding_gene FALSE TRUE AT1G49400.1 EMB1129 (EMBRYO DEFECTIVE 1129); structural constituent of ribosome similar to ribosomal protein S17 family protein [Arabidopsis thaliana] (TAIR:AT3G18880.1); similar to ribosomal protein S17, putative [Medicago truncatula] (GB:ABE91522.1); similar to Os08g0359600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061632.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) 0.232684471176639 1.78245476713743 0.102562585107368 1 0.787405895817897 11.7132742735982 0.232684471176639 0.168804562007136
AT1G15960_at 2.71035906430507 2.58107137875906 4.25617167712279 3.872075081318 6.22942419397679 4.95723457607221 5.22896102263736 4.84921249532132 5.11262764716352 6.0779661875661 5.75228344701337 4.51999828949621 5.6025726656707 5.36460630190329 3.7959452570595 4.71546256691328 4.43459698393682 5.48395250955426 4.86201539136354 0.258388463788338 0.252233437146793 0.26281944741371 0.267726349043994 0.253740886826050 0.254462312403630 0.253448398970098 0.250704783769263 0.266109846768449 0.251762597576692 0.255814578723334 0.252684609216412 0.259930392642994 0.252978868407112 0.263256358454631 0.250704783769263 0.284614619365861 0.265137447405019 0.250906743188371 1 1 - 5482272 5482857 5482443 5481659 5485076 - gene protein_coding_gene FALSE TRUE AT1G15960.1 NRAMP6 (NRAMP metal ion transporter 6); metal ion transporter member of Nramp2 family Identical to Metal transporter Nramp6 (AtNramp6) (NRAMP6) [Arabidopsis Thaliana] (GB:Q9S9N8;GB:Q9C5V8); similar to NRAMP1 (NRAMP metal ion transporter 1), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G80830.1); similar to NRAMP family metal transporter [Chen (GB:BAE48710.1); similar to Os06g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058349.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) 0.297066451264561 1.78233370846285 0.102583195000444 1 0.787240246613035 9.49033718355131 0.297066451264561 0.240223366039753
AT4G19450_at 7.57850505469472 7.68724250225646 7.67788681252753 7.52162399235921 7.82437080842617 7.522871184268 8.3147178033569 8.24431618187513 6.32753399726226 6.58813763694043 6.62894487053487 6.00153126880218 7.07339848468903 6.46052446132761 5.37527901561048 6.97904943503583 7.30318274113325 6.40535696295745 6.66868925294593 0.237070623093089 0.227790915266353 0.229453108147936 0.23477912452599 0.230524141831204 0.234690006778138 0.235817170933972 0.238136785163569 0.252015200777726 0.23189374389504 0.228603547160999 0.240590835013646 0.246935075021999 0.230075218190467 0.231760636934742 0.228387753059317 0.246428142421454 0.243700572021566 0.237230045294001 4 4 + 10608605 10609135 10608902.091 10606464 10609346 + gene protein_coding_gene FALSE TRUE AT4G19450.1 nodulin-related similar to NFD4 (NUCLEAR FUSION DEFECTIVE 4) [Arabidopsis thaliana] (TAIR:AT1G31470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45275.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os11g0107400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065544.1); similar to Os12g0106500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065940.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) -0.15960953842772 -1.78221760370827 0.102602965033944 1 0.787081381400977 14.3247061428343 -0.15960953842772 0.0628977676048703
AT3G16100_at 7.61203877101539 7.73679193630934 7.60177683037001 7.66813794674937 8.0040843926515 7.56253668280257 8.70607804023659 8.19927739075543 7.70508748887976 7.77368150860105 7.63492427917357 7.69636137834504 7.89592714273413 7.75838798902168 7.83596134945726 7.82260665129412 7.72538260873206 7.43407091144321 7.79358534012545 0.14956863920143 0.148592722701743 0.150978872156517 0.154513095065617 0.148624838412511 0.160300898681296 0.157442652274996 0.155336451641028 0.161782673343205 0.159577429499323 0.152282350739358 0.154829767611905 0.158334376294256 0.157751790150876 0.168835819441149 0.147562681964880 0.162145240577206 0.153151979539196 0.149754167943660 3 0|3 /|+ 5459578 5460538 5460186 5459178 5460796 + gene protein_coding_gene FALSE TRUE AT3G16100.1 AtRABG3c/AtRab7D (Arabidopsis Rab GTPase homolog G3c); GTP binding similar to AtRABG3d (Arabidopsis Rab GTPase homolog G3d), GTP binding [Arabidopsis thaliana] (TAIR:AT1G52280.1); similar to Ras-related protein Rab7 (GB:Q9XER8); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.193205614264720 -1.78162700582470 0.102703584137655 1 0.786273352209573 15.6277923661832 -0.193205614264720 0.118864549210494
AT1G62030_at 4.48272945253332 5.26512652133328 4.18745061898869 4.22836890138683 5.06248576850506 5.26973841192156 4.82058654483273 4.90006034334799 4.47807573291891 5.37399632570813 5.69927568668919 6.26441225224005 6.23465245577134 5.06281112392882 5.42646748585368 6.31003941845265 5.73495163040559 5.30638132475525 5.61355718519574 0.220638431876497 0.222386214279967 0.219655187215660 0.223583584813205 0.226675003008023 0.231832998088047 0.218928105877163 0.224520059093406 0.222475856887533 0.227208930310186 0.220760183506945 0.219870777096485 0.230003191630613 0.237851367106782 0.225745369137071 0.218562615394188 0.229256102917333 0.223520370030339 0.22267444708584 1 1 - 22928015 22928418 22928199.636 22927915 22930263 - gene protein_coding_gene FALSE TRUE AT1G62030.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02540.1); similar to MEE53 (maternal effect embryo arrest 53), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G10560.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.209774692004927 1.78145773682044 0.102732438700206 1 0.78604179107822 10.2321101554577 0.209774692004927 0.140918915556664
AT4G15410_at 6.00965813999267 6.28858506244412 5.78478766378112 5.79461013147472 5.73464730773158 6.13702462053083 5.79858458387782 6.23640146464987 5.37246087768963 4.97693357711375 5.29008266061294 6.07963106427618 5.89474694976272 6.08959581958244 5.66391592518858 5.87983428347757 5.87251205729895 5.37609671436243 5.15691431862465 0.219172639619001 0.230687628095956 0.216967774944574 0.217104900953834 0.216266661328706 0.216898023862395 0.221029988421099 0.218395094770264 0.244686518851102 0.213447154257848 0.224277592969129 0.215789398078797 0.217925819340551 0.215776945844846 0.216473558383963 0.216639425024189 0.224447233852854 0.230885141681076 0.219280882214937 4 4 + 8815810 8816572 8816248.273 8814801 8816805 + gene protein_coding_gene FALSE TRUE AT4G15410.1 ATB' GAMMA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) B' regulatory subunit of PP2A (AtB'gamma) mRNA, complete Identical to UBA and UBX domain-containing protein At4g15410 [Arabidopsis Thaliana] (GB:Q7Y175;GB:O23394;GB:Q94A11); similar to PUX4 (LANT UBX DOMAIN-CONTAINING PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT4G04210.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain SEP; (InterPro:IPR012989) 0.189496230657995 1.78133858783762 0.102752753928666 1 0.785878801161418 11.4415731345418 0.189496230657995 0.113675686195214
AT2G15420_at 1.61157160271627 0.859917234925086 1.61411824357969 1.85863609843399 1.71634348231629 1.53896631282375 1.30235376430908 1.26680346531075 1.78658915159817 1.32815987198905 1.50087464745135 1.31496741253885 1.24202799605843 1.36118200009108 1.36985021000478 1.44382510738213 1.99703928629112 1.24727519771318 1.19912622915443 0.221190504250705 0.224361363831647 0.23292398006847 0.222986120112029 0.222620012152506 0.224619917492955 0.218761772558673 0.223682409478081 0.227593308777152 0.221972023977807 0.218761772558673 0.222527814084270 0.22582821206142 0.222093746931345 0.229723684692517 0.218761772558673 0.225855317686817 0.221462744798842 0.230204130826180 2 2|0 -|/ 6731683 6732351 6732000 6731030 6735265 - gene protein_coding_gene FALSE TRUE AT2G15420.1 myosin heavy chain-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT3G42060.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1) 0.209263166041974 1.78107014775753 0.102798537057989 1 0.78551160866379 2.90738310043782 0.209263166041974 0.140323725151851
AT1G21350_at 5.94703416265154 5.65238240804737 6.15288372267587 5.47307383407654 6.1870000874132 5.75197766092949 6.57909612318355 6.46163501140343 6.22266545469806 6.53634368811143 6.92107886653562 6.9963739807483 7.02591684562636 7.0975976067642 7.16426799565701 7.40022700914012 6.64377509942594 6.8066472062374 6.15458480837146 0.19118439578388 0.1959506209614 0.200420957044380 0.207253749146099 0.187869341074120 0.197608386771845 0.191738765887186 0.196133968456575 0.212517903510942 0.194971209183982 0.1906962969177 0.189539044669562 0.197769149080582 0.206453685882248 0.196487526971296 0.189771807501007 0.196347979988235 0.187869341074120 0.198536353878039 1 1 - 7477503 7478949 7478323.364 7476930 7479030 - gene protein_coding_gene FALSE TRUE AT1G21350.1|AT1G21350.2|AT1G21350.3 electron carrier|electron carrier/ oxidoreductase similar to hypothetical protein RB2501_11257 [Robi (GB:ZP_01121638.1); similar to Os07g0260300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059323.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594)|similar to hypothetical protein Noc_0989 [Nitrosococcus oceani ATCC 19707] (GB:YP_343028.1); similar to Os07g0260300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059323.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594)|similar to hypothetical protein Noc_0989 [Nitrosococcus oceani ATCC 19707] (GB:YP_343028.1); similar to Os07g0260300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059323.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) 0.216825579579431 1.77959271922978 0.103050847639395 1 0.783491173569454 12.6813938229612 0.216825579579431 0.150069704314009
AT1G62085_at 1.90238230890292 1.97797520220702 1.64198174324309 1.84550644286069 1.79454089248015 1.55162869089656 2.48653194337137 2.50470077667907 2.60644217027744 2.32729476583628 2.58324003971784 2.84074670381330 2.61598438342641 2.71688759934805 2.69055592372464 2.61129002742389 2.38836266716696 2.43343453001411 2.30724743136263 0.200144861951475 0.197559766051678 0.200762830911658 0.201560648609015 0.196571887944677 0.20496313385358 0.199578516692322 0.197867952851153 0.209280288674893 0.197676322099955 0.200252878690076 0.196889972853418 0.195864752795529 0.200665380509409 0.195864752795529 0.195864752795529 0.195864752795529 0.204767923938089 0.206622580161909 1 1 - 22952544 22952974 22952785.455 22952422 22953807 - gene protein_coding_gene FALSE TRUE AT1G62085.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62110.1); similar to Os05g0413000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055544.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45958.1); similar to Os11g0206400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067458.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.156540918458011 -1.77953258571693 0.103061128939990 1 0.783408956918592 4.47501809515753 -0.156540918458011 0.0564680929478098
AT2G21200_at 2.66536960431345 2.72466263443552 2.73786125557286 2.48521335293005 2.94901665079773 3.08338679777395 3.35105972892273 3.43872608608225 4.42808780468734 3.64462335991701 5.548011497288 5.02097386812435 4.81277979654906 4.52085173564904 4.97324356794383 5.16273650708028 4.27317479468771 3.98329529190481 4.66499902100609 0.254742801345658 0.265078418628966 0.264136873735690 0.262883324736873 0.268004534497078 0.268158249479239 0.249888354269997 0.250591029381748 0.257254622498034 0.258607951862712 0.253376102757848 0.252753229264907 0.252033438308714 0.264540522843382 0.253070142507552 0.252158122925064 0.255463423082684 0.249888354269997 0.258291170023013 2 2 - 9091131 9091356 9091251.273 9090987 9091456 - gene protein_coding_gene FALSE TRUE AT2G21200.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G18060.1); similar to SAUR [Raphanus sativus] (GB:BAA25434.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.154947494015032 1.77843408808958 0.103249107914851 1 0.781907300786658 7.445805402657 0.154947494015032 0.0527993587232526
AT2G24080_at 1.66272197786049 1.83505736853042 2.03458591493868 1.93147833753438 1.71039027224707 2.04408569615073 2.21747295650945 2.12530131243277 2.29849013619179 2.83056043848311 1.93510339167452 2.15373082243326 2.08252504885757 1.94950044424041 2.35797387997378 2.00442708794437 1.84279205698032 2.30217971912044 1.99023282287522 0.212233105608013 0.211964591036769 0.216876174998219 0.215949764844164 0.210320848730296 0.214767666372999 0.208468879796609 0.218706279886456 0.225178684992113 0.21412740504919 0.211489214265601 0.215728338807953 0.212000599288462 0.217556525659401 0.210935893710614 0.209106740723119 0.214667440702051 0.215240207606454 0.218744051679077 2 2 - 10244689 10245259 10244973.818 10244684 10245859 - gene protein_coding_gene FALSE TRUE AT2G24080.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G27540.2); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.162284379031263 -1.77814272582415 0.103299019059450 1 0.781509085029846 4.17094849065206 -0.162284379031263 0.0692605556404622
AT2G04630_at 8.20311054807702 8.31035574235015 8.64766971644276 8.6581499307038 8.63826838843476 7.9757993252607 8.50979321930975 8.25847442060588 7.53648717780924 7.88356819908479 8.30149186638629 8.16633057253145 7.91852334317307 8.00389545807524 8.38529417977072 8.3793697967882 7.99549050053196 7.47476324137771 8.1138911240117 0.172734935869721 0.174806669013607 0.169728228350771 0.170790584152523 0.165405473181518 0.199528701654874 0.167348988358275 0.171172085408809 0.197796863276238 0.175720471400489 0.174659630041703 0.169878636263356 0.17802828613185 0.172696463354468 0.167447769551463 0.177787498629691 0.195939293862383 0.218108847129303 0.168594239864202 2 2|0 -|/ 1619171 1620219 1619534.5 1618933 1620333 - gene protein_coding_gene FALSE TRUE AT2G04630.1 DNA-directed RNA polymerase II, putative similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT5G51940.1); similar to Os07g0463100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059582.1); similar to Os03g0586600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050570.1); similar to DNA-directed RNA polymerase IIa [Nicotiana tabacum] (GB:AAD34613.1); contains InterPro domain DNA-directed RNA polymerase, 14 to 18 kDa subunit; (InterPro:IPR006111); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB6/omega; (InterPro:IPR012293); contains InterPro domain RNA polymerase Rpb6; (InterPro:IPR006110) 0.196517196909447 1.77766862384590 0.103380280787577 1 0.780861182959595 16.3615995131304 0.196517196909447 0.124025727081083
AT3G52460_at 1.68492794137100 1.51007315695304 2.13181737180002 2.03366456286030 1.21365249459635 1.98921545239265 1.40412067133674 1.48660003014778 1.72180375794456 1.29087345589560 1.43854206660119 1.69596625583798 1.91387415336284 1.42762362317216 1.75084161001331 1.3077134779436 1.82419955087817 1.86486121380744 1.65955959832334 0.167690739626407 0.174112218581862 0.174938388325589 0.171729087969947 0.174549788704261 0.183363324131054 0.172428337890732 0.170310668181094 0.172723484697167 0.170518859278670 0.165033884779559 0.168180593663879 0.168383881794060 0.172369226903213 0.170851240825986 0.165033884779559 0.170899812005169 0.167376196857073 0.171112590186227 3 3 + 19458261 19458825 19458550.455 19457948 19458850 + gene protein_coding_gene FALSE TRUE AT3G52460.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27260.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32758.1); similar to Os11g0157300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065800.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.208098746845554 1.77754371011784 0.103401700819422 1 0.780690491986028 3.28694146751886 0.208098746845554 0.139361009483077
AT3G10520_at 9.87702704087485 9.89727937072586 8.74116226872862 8.68084326942202 10.0922734737792 9.72791572544455 9.57776975172829 9.4456941697405 10.4192941653055 9.92011727987744 10.4060066339655 10.5101878766852 10.2062588272420 10.2283969646240 10.3310905062028 10.4614403250016 9.5109640126198 9.93709910449767 10.0600529359852 0.102720725346684 0.103831670775988 0.106115775371746 0.105490127977540 0.103187963775743 0.101869448984155 0.102521441109211 0.104118993158731 0.108930108855437 0.103038882172639 0.106078311170418 0.104851891206674 0.103943478240139 0.104953780731878 0.101203651539657 0.104937415380629 0.105039287547398 0.105500566484561 0.101656069271604 3 3|0 -|/ 3276541 3277682 3277120.3 3276235 3277865 - gene protein_coding_gene FALSE TRUE AT3G10520.1 AHB2 (NON-SYMBIOTIC HAEMOGLOBIN 2) class 2 non-symbiotic hemoglobin Identical to Non-symbiotic hemoglobin 2 (Hb2) (ARAth GLB2) (AHB2) [Arabidopsis Thaliana] (GB:O24521); similar to AHB1 (ARABIDOPSIS HEMOGLOBIN 1) [Arabidopsis thaliana] (TAIR:AT2G16060.1); similar to Non-symbiotic hemoglobin 2 (Hb2) (BRAna GLB2) (GB:Q941Q2); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Globin; (InterPro:IPR000971); contains InterPro domain Globin-related; (InterPro:IPR012292); contains InterPro domain Leghaemoglobin; (InterPro:IPR001032) -0.161559080645815 -1.77717362986571 0.103465185293832 1 0.780184823916779 19.6710382963442 -0.161559080645815 0.0679664490360126
AT1G30440_at 5.57796445796343 5.45354491733596 4.69649721447618 5.05619617614353 5.75899019155071 5.55642613987347 5.55698413155855 5.75664557461263 6.3368432448862 6.09118733665108 7.43772239060882 7.18609761942872 7.10477535827371 7.08341356563247 7.12636372513387 6.56587856821112 6.21085928495597 6.71983366376429 6.3882971163894 0.199263188495268 0.188952036844048 0.194316359128396 0.199098674558976 0.186552254701481 0.194884716652569 0.185479575835148 0.188405111456541 0.204246267282903 0.185479575835148 0.185479575835148 0.186193692032734 0.185479575835148 0.190298950762793 0.190348940701787 0.185479575835148 0.198784017100124 0.191819622041903 0.185479575835148 1 1 + 10761592 10762152 10761831 10759457 10762376 + gene protein_coding_gene FALSE TRUE AT1G30440.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G03250.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97835.1); similar to NPH3 family protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85278.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97836.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.169000724751113 1.77634704737479 0.103607106936759 1 0.779055596544094 12.0273947277610 0.169000724751113 0.0822256359220857
AT3G26760_at 2.8545894647854 2.46574345946843 2.78108448991815 2.77610114439642 2.53273262052600 2.75402412918644 2.36651812995994 2.81447315873249 2.55368295221195 2.80507863810185 3.00649524220756 3.07355952746352 2.40873081728424 3.08302581918728 3.46987765066536 3.15025736189804 3.41262410258739 2.68934486363438 2.89185720488861 0.238690789479229 0.239324697929741 0.234502631816862 0.240040447828602 0.235226944717997 0.255297887152147 0.234502631816862 0.239633446791158 0.251237471157485 0.234502631816862 0.240268141717202 0.237666275642136 0.238832201684507 0.244955451638674 0.239747313794653 0.243886477068780 0.235713854511234 0.239801176980152 0.234502631816862 3 3|0 +|/ 9845392 9846104 9845797.8 9844828 9846413 + gene protein_coding_gene FALSE TRUE AT3G26760.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G26770.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD32552.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.186093850409343 1.77601448046854 0.103664257420931 1 0.778601339070833 5.56163116871338 0.186093850409343 0.109566931904336
AT4G16700_at 1.99568614996020 1.75798075124509 2.06332349073282 2.11284206353566 1.62505723045828 1.84022388094696 1.88298670677687 1.60495775635892 1.36926482033773 1.74398583184218 1.92593635010303 1.87098759142925 1.90721410753041 1.77384870682118 2.15113682668839 1.70335282738245 1.66744874468332 1.24306613963028 1.54110471584358 0.200375814011215 0.201458272015616 0.203359121627235 0.204082435247483 0.205628559291849 0.205731281839183 0.205704607323064 0.20450877821377 0.204661561522439 0.208860664081094 0.203148786693725 0.200375814011215 0.200746201412261 0.200375814011215 0.216368606363354 0.201728476428158 0.216928684919284 0.204043559441938 0.206669493442963 4 4|0 -|/ 9396116 9396981 9396638.8 9395658 9398330 - gene protein_coding_gene FALSE TRUE AT4G16700.1 phosphatidylserine decarboxylase similar to PSD2 (Phosphatidylserine decarboxylase 2) [Arabidopsis thaliana] (TAIR:AT4G25970.1); similar to Phosphatidylserine decarboxylase [Medicago truncatula] (GB:ABE81413.1); contains InterPro domain Phosphatidylserine decarboxylase-related; (InterPro:IPR003817); contains InterPro domain Phosphatidylserine decarboxylase; (InterPro:IPR005221) 0.164440473887769 1.77570317849706 0.103717779497443 1 0.778176166910287 3.5262951043142 0.164440473887769 0.0739396643000592
AT1G45110_at 2.17387559145132 2.25377851564546 2.55982979188487 2.07174044675475 2.29212730560975 2.21834313848795 2.85156711331805 2.19368523188415 2.85281296450827 2.74877365674918 2.44493073921886 2.45857172783803 2.8148911092483 2.44590508264390 2.10430183439892 2.64887685245648 2.45911230188973 2.51878743697874 2.87534837898423 0.229474167968978 0.229055858285432 0.227768531449445 0.235810687568857 0.221807688229151 0.223743186093389 0.22896627716287 0.229610920685818 0.242197695881133 0.227338381938049 0.224152511164689 0.224990505913426 0.22527426477795 0.227253477565483 0.224714154557809 0.226627299221851 0.221893257402552 0.228989071355795 0.228213262537226 1 1|0 +|/ 17055889 17056685 17056286.556 17054974 17057232 + gene protein_coding_gene FALSE TRUE AT1G45110.1 tetrapyrrole methylase family protein similar to Os10g0414500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064595.1); similar to hypothetical protein F9002 [Zea mays] (GB:AAV64189.1); contains InterPro domain Protein of unknown function UPF0011; (InterPro:IPR008189); contains InterPro domain Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; (InterPro:IPR000878) -0.210719653443429 -1.77559508778325 0.103736369368227 1 0.778028546909374 4.98315195971188 -0.210719653443429 0.143005191236025
AT4G16650_at 4.37164515779028 4.90070279794718 3.94432246082346 4.04752445134399 4.78717297862373 4.8521805151364 4.98251553107264 5.40900906228553 4.56253967878541 4.82685631560918 4.80560136354137 5.33027939847068 4.82627520057615 4.50379954254205 5.07204556148835 4.61766140462184 4.94090098488687 4.77423205605353 4.82033698187593 0.236469777450638 0.240683291444284 0.229833809490116 0.234298272349767 0.232761466696732 0.233534782745849 0.230808867065277 0.236751643439171 0.234396657559028 0.235836629605147 0.236551245712838 0.232465353851373 0.232187161867357 0.23181042022951 0.237306314221691 0.234021084741446 0.237902407407225 0.232246082353936 0.236129857049691 4 4|0 +|/ 9375086 9375902 9375565.556 9372499 9376431 + gene protein_coding_gene FALSE TRUE AT4G16650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76270.1); similar to OSIGBa0122F23.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67151.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD10226.1); similar to OSJNBa0010H02.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE01682.2); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.192948127763122 -1.77518830279149 0.103806356947927 1 0.777473039764949 9.45959766826762 -0.192948127763122 0.119479846173546
AT4G36730_at 8.48341010226282 8.3656201919256 8.58956921131776 8.6754060981719 9.06376207759536 9.075249912528 8.87059938725821 8.87930472027168 8.68872700462607 8.3816690193072 9.0543390697747 8.81381849564388 8.95559046721532 8.77098576567125 8.63521635390314 8.70462927708926 8.69131609032773 8.34996598771932 8.8961466289979 0.0932745426361605 0.095005641541155 0.0909133066446948 0.091488871991253 0.0893606733219084 0.0991544525026828 0.096061576793867 0.0894664292905584 0.0993668258792613 0.0911862497680845 0.0945912218350583 0.0893624739218658 0.0931487786314806 0.0945026405900236 0.0913919589053198 0.0893606733219084 0.093255473986025 0.0991818361649354 0.0942273612076395 4 4|0 -|/ 17310260 17310926 17310511.625 17309616 17312492 - gene protein_coding_gene FALSE TRUE AT4G36730.1|AT4G36730.2 GBF1 (G-box binding factor 1); transcription factor member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box Identical to G-box-binding factor 1 (AtbZIP41) (GBF1) [Arabidopsis Thaliana] (GB:P42774;GB:Q940I9;GB:Q944J1;GB:Q96263); similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G35530.1); similar to G-box binding factor 1A [Brassica napus] (GB:CAA58774.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.146365847624012 1.77465398049867 0.103898352431666 1 0.776743465788651 17.4516136656973 0.146365847624012 0.0253453826492361
AT2G27120_at 0.744873528480571 0.870324214246403 1.30158738460019 1.49148924439513 0.947470700623217 1.25629284535228 1.21065732249923 1.35481228677531 1.03363763513479 1.25342650690616 1.29879634802202 1.24239795961004 1.23762678246890 1.25440367330686 1.18894967129256 1.35859745804960 1.34751121574508 1.46522457853710 1.24608445259777 0.227536923658099 0.23638959034581 0.233843238397142 0.237926254156396 0.233569197707243 0.235370208571447 0.228360820007416 0.241713631311109 0.240454393926861 0.237775521200709 0.234709004536765 0.232322266300653 0.231508339072551 0.2305561713441 0.243543622275749 0.230874021668762 0.232010767887197 0.231988784577682 0.231978805136057 2 2|0 +|/ 11600248 11601400 11600843.2 11588301 11601424 + gene protein_coding_gene FALSE TRUE AT2G27120.1 POL2B/TIL2 (TILTED2); DNA-directed DNA polymerase Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. similar to EMB2284/POL2A/TIL1 (EMBRYO DEFECTIVE 2284), DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT1G08260.1); similar to PREDICTED: polymerase (DNA directed), epsilon [Gallus gallus] (GB:XP_001233985.1); similar to polymerase (DNA directed), epsilon [Homo sapiens] (GB:AAP12650.1); similar to putative DNA polymerase epsilon catalytic subunit protein isoform b [Oryza sativa (japonica cultivar-group)] (GB:BAD23092.1); contains InterPro domain DNA-directed DNA polymerase B; (InterPro:IPR006172); contains InterPro domain DNA polymerase B, exonuclease; (InterPro:IPR006133); contains InterPro domain Domain of unknown function DUF1744; (InterPro:IPR013697); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain DNA polymerase B region; (InterPro:IPR006134) 0.162757734204219 1.77423814007705 0.103969999756257 1 0.7761757467579 2.38564077041750 0.162757734204219 0.0709212473984799
AT3G62190_at 7.93842353554633 8.16640716417256 8.21765436902834 8.116835593427 8.76323804854397 7.97381893696759 8.41302093636458 7.8813728983842 8.15462809891585 8.08746094847922 7.86410172811586 7.45219419345255 7.53308487694224 7.70719116306671 7.164506218295 8.04229489108838 7.54039388585238 7.4778280040705 8.45198890169607 0.214410157423117 0.210250775439128 0.223711661068728 0.217932604765053 0.208592247227040 0.226641735940065 0.208592247227040 0.217917922411415 0.224941193138195 0.211864780288394 0.215823331691934 0.209479657633474 0.208725977654967 0.218449726674757 0.232351236842283 0.208592247227040 0.229726439451445 0.220650244420290 0.208592247227040 3 3|0 +|/ 23032134 23033546 23032971.444 23032096 23034307 + gene protein_coding_gene FALSE TRUE AT3G62190.1 DNAJ heat shock N-terminal domain-containing protein similar to Os07g0637100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060399.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79526.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.232789671439227 -1.77383805637622 0.104038974541518 1 0.775629603391726 16.0983757785414 -0.232789671439227 0.170260913442171
AT2G21210_at 9.32302448394837 9.55298476854894 9.88646717110878 9.90564603140057 10.8485423543592 10.5769499388282 10.6803253630629 10.7261010251318 10.6753326765124 10.6291245415904 11.0999423226502 10.8504811536743 10.8088970487923 10.7971620733113 10.7036805352471 10.8421430335108 10.7286086064984 10.6503456914338 10.8764695855996 0.110247296088091 0.108412237471146 0.119113150265318 0.115524420801005 0.105732099782866 0.108934950775779 0.108231859564438 0.108126104502580 0.115535241349401 0.104113542044347 0.106421500863198 0.104969368611353 0.103911975935002 0.107423391563266 0.104236188306456 0.103223552559284 0.104367561563217 0.103223552559284 0.103223552559284 2 2 - 9092617 9092857 9092757 9092291 9092990 - gene protein_coding_gene FALSE TRUE AT2G21210.1 auxin-responsive protein, putative Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G38840.1); similar to hypothetical protein [Malus x domestica] (GB:CAB07785.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.158487210328412 1.77333189151038 0.104126297240982 1 0.774938741592958 20.9560717217356 0.158487210328412 0.0621811710505641
AT2G19880_at 3.98326260092589 3.99695742867265 4.01207521686578 3.88080052013359 4.39898969845797 3.94904153961399 4.93024352901096 4.08695004120717 4.52132905499105 3.615321284063 5.62504979116254 5.23981392752206 5.06635318187499 4.46530676492976 4.85938946989609 4.31226586821759 4.47696226431313 4.39027300978744 4.32955886076033 0.232109079880531 0.233081582902805 0.242600470096833 0.237097785862868 0.233557243344813 0.237918121204921 0.235280895204893 0.239664486669605 0.236188452499623 0.238755413499914 0.23776463140926 0.230026806880948 0.234259427264921 0.230026806880948 0.23564178728505 0.230839044973799 0.233504600062303 0.245062633310017 0.238198719557109 2 2|0 +|/ 8591213 8592157 8591610.1 8588440 8592560 + gene protein_coding_gene FALSE TRUE AT2G19880.1 ceramide glucosyltransferase, putative similar to putative ceramide glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD82732.1); similar to ceramide glucosyltransferase [Gossypium arboreum] (GB:AAK73021.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.229948530960911 1.77325856542631 0.104138952839018 1 0.774838667548541 8.63470499751987 0.229948530960911 0.166979174998006
AT4G23650_at 8.94721604400763 9.30039529534591 8.87888411415625 8.97756904549004 9.024153715801 8.7421257599227 8.62914638473786 8.66686433587143 8.9525171742194 8.69822140271644 9.13827437014715 9.47594271470135 8.86054410176991 8.86237374394286 8.87939778597324 9.071542453952 8.73221161621435 9.28565585476187 8.51773013937876 0.153188815013362 0.145813412600233 0.153976076150764 0.142779757939593 0.151141112554012 0.148828746694579 0.144286969740388 0.150358435097257 0.150027730961456 0.146158064035397 0.155577431501473 0.144176222981222 0.145418803602817 0.149322417704513 0.149576151564161 0.143165726210677 0.151411852538995 0.146834657784743 0.144132886230826 4 4|0 -|/ 12324982 12325875 12325554.889 12324768 12327469 - gene protein_coding_gene FALSE TRUE AT4G23650.1 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. similar to CPK17 (calcium-dependent protein kinase 17), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12180.1); similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G50700.1); similar to CPK34 (calcium-dependent protein kinase 34), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19360.1); similar to CDPK [Ipomoea nil] (GB:ABC47163.2); similar to putative calcium-dependent protein kinase [Triticum aestivum] (GB:CAF18446.1); similar to EPS15 homology (EH); Protein kinase [Medicago truncatula] (GB:ABE79749.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.167598784298215 1.77277649994226 0.104222188872996 1 0.774180806363611 17.7763272047271 0.167598784298215 0.0803235996918383
AT1G29760_at 7.45793533589856 7.91818751715718 7.81894240379357 8.37100796717732 8.39914850955376 8.2110247780149 7.25176605760646 7.30670103354408 7.18041129449746 7.47718734096267 6.92547005807465 6.80743197831446 7.42900179068462 6.94264689139525 6.60736902612379 7.51933072296948 7.6546304878295 7.16696959834725 7.68910383120302 0.188562987785318 0.191898551213987 0.19172626448233 0.199143975623213 0.197834625161253 0.201874894631666 0.19349668048506 0.197448284227687 0.218469583088710 0.191717912459151 0.200436188728156 0.188732690916041 0.197002802799144 0.197075463681628 0.208745338148317 0.190454056557136 0.204601106638848 0.195978037117219 0.196052729303302 1 1 + 10423380 10424057 10423795.909 10422316 10424312 + gene protein_coding_gene FALSE TRUE AT1G29760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34380.1); similar to Os09g0534000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063772.1); similar to hypothetical protein MtrDRAFT_AC148171g21v1 [Medicago truncatula] (GB:ABE89808.1); contains domain SUBFAMILY NOT NAMED (PTHR21212:SF1); contains domain FAMILY NOT NAMED (PTHR21212) 0.199544462789822 1.77232219788782 0.104300686300643 1 0.773560916779919 15.1320927710624 0.199544462789822 0.128924777563824
AT3G29610_at 0.725927907873033 0.868891425637937 0.718063823361821 0.975342971807406 0.898646099219023 0.507738248038609 0.83382057705597 0.551338628588681 1.36123011166765 2.07995945530069 0.782828924896524 1.34190519481009 1.61989363457167 1.15073746863017 0.887311607768208 1.14064604700847 0.991259317516589 1.00485590408694 1.06099458089864 0.230024126474605 0.229473761750491 0.252026629738648 0.227599210155275 0.228130392251229 0.252062216788917 0.227599210155275 0.232691771512390 0.227599210155275 0.238310769800590 0.229965265163234 0.234773271295044 0.238361236230774 0.227599210155275 0.231519345242318 0.234485485240375 0.227599210155275 0.234211357479018 0.232047429978641 3 3 + 11412174 11412542 11412371.333 11412081 11412569 + gene protein_coding_gene FALSE TRUE AT3G29610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31406.1) -0.177922568030050 -1.77209803210364 0.104339438940190 1 0.773255075228975 2.06780011604785 -0.177922568030050 0.0977775890846998
AT3G56360_at 10.4431499712420 10.5380705284301 10.5879217113865 10.458431267175 11.1552858976157 11.1030796847242 10.8481889315796 11.0665476114861 11.2982498441072 11.6738617720925 11.0093150807306 10.9323709930384 11.3095586121805 11.3049519729197 10.7412478422169 11.2766777355685 11.3656234056139 10.7966413736288 11.5252551429909 0.0919770019658382 0.09020174954145 0.0948595032933235 0.0890142768219589 0.0907293100208169 0.101420067256087 0.0914684214694506 0.0934100989723452 0.102435246464681 0.0888530137585608 0.092563821229247 0.0918370565976227 0.0899655739760487 0.0917436703969535 0.0943793607844522 0.0916024874568748 0.0959133245570314 0.0998632026681765 0.0905187842923129 3 3 + 20907771 20908292 20908004.636 20907460 20908572 + gene protein_coding_gene FALSE TRUE AT3G56360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP03420.1) -0.152441748267735 -1.77152359931920 0.104438803515630 1 0.772471435660264 22.0706697654802 -0.152441748267735 0.0477654977127546
AT1G08710_at 3.64911427377575 3.43890255285111 3.97146420507867 3.54123407367586 4.08387501541717 4.0686139918193 3.31691346269676 3.21281504306205 3.48580726641595 3.2351798434588 2.99603153648640 2.98853956070823 3.22379173841767 3.04423313305530 2.50152988068812 3.58643853418449 3.37215883179585 3.12080092153938 3.10698564642163 0.209959550033784 0.208164483778358 0.205091358424326 0.206747155370454 0.207337849088024 0.212425585229155 0.208526584916609 0.205091358424326 0.210802602932951 0.207522552095020 0.205613579143215 0.217698069254057 0.205091358424326 0.206573955366477 0.217329873273601 0.205091358424326 0.213911912668377 0.216470349407473 0.213375798216362 1 1 + 2772121 2772989 2772546.273 2771636 2773463 + gene protein_coding_gene FALSE TRUE AT1G08710.1|AT1G08710.2 F-box family protein similar to Os01g0814700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044610.1); contains domain no description (G3D.3.80.10.10); contains domain F-box domain (SSF81383) 0.170030043372652 1.77151084563641 0.104441010602358 1 0.772454038596595 6.85045729523453 0.170030043372652 0.0848420346514088
AT2G16380_at 6.71201721527873 6.69034010324447 6.50894260737052 6.67405232381437 6.96991232036573 6.99206839980113 6.29413379068671 6.0622967419946 6.86387918878122 6.49462181965214 6.92278507603139 7.112031514041 6.42204447420846 6.58093012241842 6.48912159387297 6.64613427036444 6.68510593472995 6.47928044004346 6.76429589796146 0.161880317466803 0.154056634809991 0.155251352067907 0.152454088216718 0.156400192085133 0.161103143703951 0.155583840835033 0.155416024617802 0.170240695148875 0.163401076454379 0.162079193432876 0.156785394273901 0.156167155916942 0.171112102780686 0.160201544546412 0.156786380062959 0.160238510479794 0.167067971352644 0.168354476492871 2 0|2 /|+ 7095139 7095616 7095388.5 7092866 7096239 + gene protein_coding_gene FALSE TRUE AT2G16380.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.153063579726151 1.77114722779794 0.104503954215623 1 0.771958061151386 13.3003595113255 0.153063579726151 0.0495463767255016
AT1G29770_at 0.869610672355234 0.892363602374129 0.442750950465778 0.762800687035131 0.489830128128308 0.71747917975631 0.949157292338364 0.447863195534757 1.32722256563594 1.39397621841402 0.904299627360033 1.10226764150222 0.694417516288534 0.956708699305043 1.45750719568760 1.27991952353751 1.25340881473563 1.28372214760075 1.18510492543447 0.208265396535376 0.212805397583341 0.220006065523164 0.207307290800148 0.208823145584020 0.214930155759489 0.216615022171234 0.211356352767871 0.216249613906256 0.222542311576283 0.21330769923466 0.222105515734178 0.212006287708234 0.213082777017020 0.208840248720331 0.212822728836394 0.217293007498166 0.221221307015437 0.214476070175977 1 1 + 10425053 10425595 10425355.818 10424561 10425786 + gene protein_coding_gene FALSE TRUE AT1G29770.1 NLI interacting factor (NIF) family protein similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to carboxy-terminal domain phosphatase [Dictyostelium discoideum] (GB:XP_628708.1); similar to Os05g0205100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054894.1); contains InterPro domain Dullard-like phosphatase domain; (InterPro:IPR011948); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.186051647523442 -1.77099199618997 0.104530835856438 1 0.771746339942097 1.90579827962199 -0.186051647523442 0.110276617238199
AT2G04840_at 1.30714109050996 1.56220287436220 1.09907488746464 1.53882383391916 1.6410530033481 1.39296257060323 1.72597705215253 1.45605257487948 1.91177357644007 1.89783946916396 1.53095312317550 1.37321205895714 1.34218946360244 1.16533337249755 1.60983497394263 1.59324311334925 1.47426978747781 1.76466089746813 1.45980981486486 0.184950492105044 0.184070596767713 0.194653730540726 0.184556047404179 0.189599509593100 0.198481844847473 0.191278899931526 0.184070596767713 0.184070596767713 0.198424021515141 0.188898391447704 0.194020131259994 0.189898972486610 0.185079054144515 0.19721284437316 0.184070596767713 0.192215695688787 0.184658846414676 0.184070596767713 2 2 + 1697711 1698209 1697953.091 1697006 1698237 + gene protein_coding_gene FALSE TRUE AT2G04840.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G04810.1); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.184813506078208 -1.77092685491505 0.104542118313861 1 0.771657496241328 3.0845041787208 -0.184813506078208 0.108465899991546
AT2G36890_at 1.22129903897832 1.34589266777263 1.46500066818895 1.19200261297648 1.33861674907274 1.23658449497788 1.13432239760275 1.36475815291047 1.06657478550878 0.880330078802747 1.20905286425167 1.21099249118585 1.43979254023575 1.40035594960782 1.17645913663776 1.35118922494769 1.26443964755183 1.61954924531522 1.21421892591968 0.222664655221035 0.224800813522094 0.230970458422141 0.232216233571791 0.217540226011176 0.226464635421868 0.211010902418685 0.216535760175414 0.219540180667138 0.213293031628737 0.217314942314329 0.219922572047267 0.216634860691093 0.215696173525929 0.220628958738322 0.226086337342470 0.216264401315027 0.216767642972943 0.215646939701437 2 2 + 15493769 15494294 15493956.636 15492858 15494356 + gene protein_coding_gene FALSE TRUE AT2G36890.1 ATMYB38/MYB38/RAX2 (myb domain protein 38); DNA binding / transcription factor Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. similar to ATMYB37/MYB37/RAX1 (myb domain protein 37), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G23000.1); similar to blind [Lycopersicon esculentum] (GB:AAL69334.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.160877012188800 1.77048033493393 0.104619485200929 1 0.771048549683637 2.48115300658191 0.160877012188800 0.0678150706096327
AT3G45840_at 1.39140897868777 1.41498599531148 1.47643648028528 1.51947677030019 1.61741417031827 1.56382624683814 1.57222329296790 1.51449406895655 2.24145015323772 2.58599983078573 2.08276949443544 1.67018604052774 2.41397509039828 1.64741534330764 1.87923375391204 0.812339394307591 1.68203702633701 2.01393198997016 1.57798888042147 0.23703705095011 0.23703705095011 0.242118994365013 0.245650917766290 0.23703705095011 0.241101217526434 0.23703705095011 0.248372297460326 0.240494274384072 0.240191251719146 0.244791906562073 0.244271433793304 0.249977679375546 0.246866074033044 0.23703705095011 0.23703705095011 0.248429295343712 0.245411851231509 0.25535173273442 3 3 - 16858996 16859251 16859110 16858889 16860872 - gene protein_coding_gene FALSE TRUE AT3G45840.1 protein binding / zinc ion binding similar to DC1 domain-containing protein / UV-B light-insensitive protein, putative [Arabidopsis thaliana] (TAIR:AT5G59940.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.144449969272139 -1.76990751465171 0.104718811629114 1 0.770267474792834 3.46397440285710 -0.144449969272139 0.0160602477296602
AT2G20280_at 7.19643678567643 7.39043188859959 7.05475553726664 7.15157605742122 7.08864940316573 6.99722703113853 6.90123229209469 7.27223200816284 6.77319066362596 6.76695275121327 6.39166021953357 6.97323782744387 6.71275917077345 6.57465625673816 6.45567162436562 6.6277765460565 6.51706269195679 6.6969452681276 6.95475018507136 0.218101825792809 0.208184498798038 0.206087678611711 0.218620605448648 0.219359936275007 0.208687690090517 0.205391128242452 0.220281777114568 0.221694438276614 0.208213779447619 0.206790403193584 0.208185945637949 0.206818805404408 0.208150697950099 0.207207993924018 0.204809997501335 0.208371207826141 0.216677294846265 0.219344609208149 2 2|0 -|/ 8747155 8747986 8747704.7 8746992 8749430 - gene protein_coding_gene FALSE TRUE AT2G20280.1 zinc finger (CCCH-type) family protein similar to putative uncharacterized hypothalamus protein HT010 [Oryza sativa (japonica cultivar-group)] (GB:BAD73384.1); similar to Os01g0834700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044722.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.164970617865557 -1.76959287918321 0.104773405423605 1 0.769838505485158 13.8567438257380 -0.164970617865557 0.0760273774338367
AT4G25790_at 1.74531413765743 2.09256072968112 1.67650106098358 1.61437052706270 1.01813235213376 1.45173687536057 1.38885165984430 1.33340219454311 1.71422009679069 1.77904833115509 1.59505795205959 1.51172093421890 1.41466168476092 1.67911174273653 1.32892275732550 1.32237628830918 2.14775047951793 1.88904275132910 1.80410994934397 0.201045093147825 0.205093204798258 0.201025222488196 0.195651291279974 0.197818041368921 0.205131526613219 0.197494217905925 0.201868994803094 0.205597683118907 0.209548421009653 0.198248185051458 0.195651291279974 0.203217162643445 0.202386256989844 0.200017798428685 0.203411592203487 0.197324373338943 0.204141856701253 0.195651291279974 4 4|0 -|/ 13122301 13123204 13122577.3 13122161 13123356 - gene protein_coding_gene FALSE TRUE AT4G25790.1 allergen V5/Tpx-1-related family protein similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Pathogenesis-related protein PR-1 precursor (GB:Q40374); similar to Os02g0786500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048336.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.177279597597024 -1.76928030240451 0.104827667532229 1 0.769412381647109 3.22854537526438 -0.177279597597024 0.0972080449057162
AT3G21550_at 2.52885396811941 2.77658629969061 1.96742541778086 2.33249816806231 2.3741211304815 2.36357349819230 2.64188030609863 3.18984475437267 3.92182313006077 3.13065078516519 4.21811368563473 4.73580260255073 4.53685964639935 4.04584025890909 4.9994518697212 3.99320869357026 3.9395630094359 5.0752178536041 3.53834055913255 0.233425659557002 0.223559024687521 0.240750620095452 0.236833098528948 0.228449068057857 0.228135341907596 0.227335501577737 0.226896157438712 0.233115227960682 0.231899405064130 0.225347651082169 0.226354360755020 0.223688940586987 0.23448926179525 0.239594527228798 0.227736686306461 0.233080196925851 0.225529735578299 0.223559024687521 3 3 - 7591767 7592219 7591992.273 7591489 7592328 - gene protein_coding_gene FALSE TRUE AT3G21550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21520.1); similar to Os07g0645300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060454.1); similar to Os03g0370400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050198.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10653.1); contains InterPro domain Protein of unknown function DUF679; (InterPro:IPR007770) 0.193924466292123 1.76910887540219 0.104857437397177 1 0.769178698218106 6.50848728981529 0.193924466292123 0.121757910287646
AT1G62400_at 2.9693609483365 2.82915765779495 2.05451715488732 2.28301951483034 2.37531684729691 2.57053572645421 1.82369215917569 2.28677528066498 2.61766674194812 2.53897410911613 2.46286435123536 2.8628713367501 2.60795833673652 1.97394583045326 2.29214941569905 2.79762202746321 1.74751851994365 2.62869804427919 2.70769666578027 0.227634803536450 0.227224575095205 0.221191640983346 0.229995478288952 0.219571113041853 0.239012768429042 0.220523039186 0.222273197360375 0.223812198408977 0.225620599186421 0.220132796355697 0.222515899792157 0.225127643903546 0.222704755892368 0.222256606629245 0.221574691755922 0.244057277293048 0.223526749339819 0.223516373163026 1 1|0 +|/ 23094539 23095134 23094923.5 23093908 23095254 + gene protein_coding_gene FALSE TRUE AT1G62400.1 HT1 (HIGH LEAF TEMPERATURE 1); kinase/ protein threonine/tyrosine kinase Identical to Serine/threonine-protein kinase HT1 (EC 2.7.11.1) (High leaf temperature protein 1) (HT1) [Arabidopsis Thaliana] (GB:Q2MHE4;GB:Q9MAV2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G58950.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06447.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.178070778376981 -1.76856858299906 0.104951314212486 1 0.768442266009319 4.92062157206422 -0.178070778376981 0.0985692810062724
AT2G28460_at 1.55473735558679 1.88433352204081 1.51451950964250 1.67675462797151 1.59261687413226 1.52496139616271 1.61235695376052 2.11375185281716 1.73717570835104 2.10524187964127 1.55770826739816 2.17679796864369 2.06214365596633 1.43067007643092 1.37627026681957 1.55876879270115 1.79153484594689 2.10578954224939 1.89386065162990 0.186581976768592 0.190764677796459 0.184426797554599 0.195239867238210 0.178475300042070 0.180556285798729 0.181153289267951 0.187234168884462 0.182896032279367 0.186741899745436 0.184478398969316 0.181299685578810 0.184655086722061 0.181511816233424 0.185377268086049 0.190578645538415 0.182172707216023 0.185448654474581 0.181654765815965 2 2 + 12175325 12175813 12175594.273 12173650 12175951 + gene protein_coding_gene FALSE TRUE AT2G28460.1 protein binding / zinc ion binding similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26380.1); similar to MEE53 (maternal effect embryo arrest 53), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G10560.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.184357069297649 -1.76826616350538 0.105003893384796 1 0.768030110929795 3.51903059829441 -0.184357069297649 0.108201101749276
AT3G59540_at 9.67170983072333 9.8355492732641 8.99744764559134 9.23467839595425 9.45421557227126 9.27971512332542 9.66683691271186 9.90151783996527 9.01246345272057 9.16354583622118 9.6209886537296 9.88699852520163 9.2700999556499 9.31019916108183 10.1079140455240 9.22594290177381 8.81828805910707 8.67450380321135 9.30849433872614 0.144677472163823 0.144239486980759 0.147657923931618 0.145742778874097 0.13877463238851 0.151820707091249 0.142472113863145 0.144473885576719 0.149970280386255 0.148499034566127 0.141336930945083 0.141059032452471 0.139291437884385 0.149236204112789 0.143406983812786 0.13877463238851 0.153458294407914 0.150988492555176 0.141270699446452 3 0|3 /|- 22007209 22007341 22007272.2 22006655 22007813 - gene protein_coding_gene FALSE TRUE AT3G59540.1 60S ribosomal protein L38 (RPL38B) Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38A) [Arabidopsis thaliana] (TAIR:AT2G43460.1); similar to Ribosomal L38e protein [Medicago truncatula] (GB:ABE93319.1); similar to 60S ribosomal protein L38 (GB:P46291); contains InterPro domain Ribosomal L38e protein; (InterPro:IPR002675) -0.16226180047165 -1.76802834943272 0.105045256901491 1 0.767706029305819 18.7681428729171 -0.16226180047165 0.0710678293536181
AT1G05670_at 2.00774582360679 2.22087235846007 2.48094819376361 2.29952621337236 2.46188313809069 2.21907463843275 2.44268754004767 2.46111241768325 2.32897106115174 2.06064307756458 2.11332052586047 2.49671741570433 2.69809240224312 2.44190924814879 2.37422952278987 2.44434291680475 2.61777051845576 2.59099435838017 2.3202239736832 0.187191816436340 0.184196052694964 0.183999585983925 0.187699405354396 0.183999585983925 0.189931049380041 0.192326474237124 0.191298929116425 0.189683089055341 0.184699225769029 0.191827366123091 0.185936567564852 0.188892930405656 0.186480462500049 0.188355481920756 0.184806237413629 0.194448167259416 0.184054501797408 0.188421947679555 1 1 - 1698779 1699123 1698983.182 1698573 1702719 - gene protein_coding_gene FALSE TRUE AT1G05670.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049.1); similar to Os07g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059770.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.158906460190321 1.76766832192752 0.105107905343454 1 0.767215443617038 4.67862369927294 0.158906460190321 0.064201250802556
AT3G10730_at 4.57991917250888 4.8875210630736 4.05714427592042 4.06080531167162 4.22963254005698 4.83347529612867 4.25720847050192 4.55379455321453 5.24225223332125 4.19619230545819 4.13237305561119 4.79670397583601 4.3351568865371 4.44583046089419 4.77379520530317 4.62737679688337 4.47901139482949 4.50196236574713 4.46298574276368 0.221468740566298 0.220727538209845 0.217485419870048 0.217993243469663 0.215913076603104 0.223530836528813 0.216382613546899 0.225449584158160 0.231662707665769 0.215913076603104 0.225148063986149 0.217195857781565 0.220390306946884 0.226831453142231 0.226376368271518 0.215913076603104 0.218729262860586 0.218326545333981 0.220247289476666 3 3 - 3358566 3359693 3358946.727 3358333 3360687 - gene protein_coding_gene FALSE TRUE AT3G10730.1 sad1/unc-84-like 2 family protein similar to sad1/unc-84 protein-related [Arabidopsis thaliana] (TAIR:AT5G04990.1); similar to Os01g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042686.1); similar to Os05g0270200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055057.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54060.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Sad1/UNC-like, C-terminal; (InterPro:IPR012919) -0.198315142511405 -1.76739628502706 0.105155264964803 1 0.766844790909224 9.00510576616103 -0.198315142511405 0.128016209961736
AT1G11410_at 7.17194293188471 7.54711261339467 7.8091139497052 7.68668192491742 7.82727028466555 7.75256779530641 8.71894825000366 8.67240609567925 8.02014929440608 8.29001299061302 8.27628828518161 8.0551034995438 8.38603327526007 8.32505348003015 7.59524994629761 8.58283347248115 8.18318273577748 7.98717948690038 8.40523112308407 0.164033915295573 0.154081743778672 0.153723139813550 0.161601832580577 0.158662993405178 0.155672560029956 0.156851822594588 0.160265673956650 0.176325111938367 0.159066022929118 0.159772329919000 0.157997623634718 0.163389990757620 0.159773723786731 0.156111036190966 0.153723139813550 0.166022409327061 0.174938169264662 0.157121757947797 1 1 + 3843547 3844253 3844013.091 3841286 3844432 + gene protein_coding_gene FALSE TRUE AT1G11410.1 S-locus protein kinase, putative similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11340.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabidopsis Receptor Kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G65800.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to receptor protein kinase [Ipomoea trifida] (GB:AAC23542.1); similar to unnamed protein product [Brassica oleracea var. acephala] (GB:CAA55950.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.161646465387812 -1.76729200401847 0.105173424643102 1 0.76670271486481 16.1044204767205 -0.161646465387812 0.0699724282312666
AT1G34245_at 1.49874546045023 1.57319522256830 0.848053251845063 1.52689389805820 0.943254820762737 0.91271371020019 1.21610360825795 1.06230157108590 1.50031464197619 0.977014743665443 1.1167975338035 0.774688555139325 1.44522940748436 1.68641291532629 0.788093588848533 1.10486013853856 1.16033066076739 1.72208199850127 1.51769828206301 0.206185184317026 0.206480538457073 0.208844076594721 0.219667140713656 0.202680869951441 0.208641205673465 0.202680869951441 0.202680869951441 0.205413454104914 0.206828501941083 0.207787952392362 0.203702367113840 0.206932377285996 0.205546381602219 0.203494748369294 0.207227426918699 0.214109861795862 0.21880744946307 0.207100035296352 1 1 + 12472985 12473581 12473386.545 12472846 12473732 + gene protein_coding_gene FALSE TRUE AT1G34245.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20875.1); similar to OSJNBa0036B21.12 [Oryza sativa (japonica cultivar-group)] (GB:CAD40894.1); similar to OSJNBb0034I13.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41727.3) -0.193360792403888 -1.76726519877641 0.105178093013857 1 0.766666195173171 2.47590156242159 -0.193360792403888 0.121256281894685
AT2G37360_at 0.716697710970635 0.924967177793707 0.704358986104317 0.145980242630989 0.98897057630356 0.720760060293978 1.17241434984997 1.10900861342544 1.64755354384896 0.638759375650535 0.874491119790603 0.922309748750229 1.24506561498407 1.18267222123559 1.18685255889537 0.873610847296145 1.25599973342915 1.29808547332727 1.13360937757659 0.201254743859368 0.202469588201641 0.207457120964414 0.210402276794673 0.201421615998064 0.211245985354524 0.209162231618365 0.200785534863238 0.209789073349201 0.202610685793504 0.200785534863238 0.204261863491129 0.207302468757972 0.212830884590121 0.207630420058491 0.211141359685618 0.205126697152287 0.207515685579185 0.204681340497165 2 2 - 15680661 15681186 15680977.364 15680521 15682999 - gene protein_coding_gene FALSE TRUE AT2G37360.1 ABC transporter family protein Identical to White-brown complex homolog protein 2 (WBC2) [Arabidopsis Thaliana] (GB:Q9ZUT0;GB:Q8GYL8); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39350.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G13580.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G53510.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90508.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to putative ATP-binding-cassette transporter protein [Oryza sativa (japonica cultivar-group)] (GB:AAN64479.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Pigment precursor permease; (InterPro:IPR005284); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.187921340494268 -1.76685002408760 0.105250423331742 1 0.7661005939234 1.93282472154103 -0.187921340494268 0.113627244239591
AT3G48150_at 3.23781869363459 3.57873006997338 3.36475860952539 3.65301349787513 3.52349694516639 4.27609750534411 3.42880219728496 3.69502052494835 3.89478278835444 3.69984249399506 3.828384493238 3.97520061647865 3.75247221752924 3.81464105202043 4.39941103930491 3.86115903479131 3.76348375367009 3.96128159186816 3.49077778738752 0.218483872823949 0.211474831514862 0.223014474160377 0.218766320919121 0.220625276600271 0.219265409249424 0.218411703471680 0.214679684981629 0.219853019245999 0.214343104744532 0.211367291760003 0.212530388868254 0.216968199409091 0.215639079821657 0.21258302426034 0.210412398946134 0.215915637402734 0.210412398946134 0.215296137683234 3 3 - 17790787 17791465 17791182.091 17790638 17793630 - gene protein_coding_gene FALSE TRUE AT3G48150.1 APC8 (anaphase-promoting complex/cyclosome 8); binding anaphase-promoting complex or cyclosome subunit similar to HBT (HOBBIT), binding [Arabidopsis thaliana] (TAIR:AT2G20000.1); similar to Os02g0656300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047624.1); similar to anaphase-promoting complex subunit 8-like protein [Oryza sativa] (GB:CAC39070.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Cdc23; (InterPro:IPR007192); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.221809318150515 1.76594900661796 0.105407550463836 1 0.764873353547459 7.40203654618984 0.221809318150515 0.158285075068061
AT2G24330_at 5.97169512559029 6.28165292453226 5.57944796129109 6.02771704695995 6.22128581214403 5.58972661728536 6.29530298344335 6.30062822833943 6.09705869940501 5.64320032563712 6.17689734334762 5.96716151261846 5.58534399182217 5.977540082229 5.74065605840164 5.8411575653585 5.03567217675857 5.52328165244265 5.64250826772945 0.213168283560705 0.199360284538978 0.211639296883360 0.216713112673514 0.197962790254735 0.236337024644678 0.198326099396466 0.208289870901762 0.214511037822482 0.203223240094303 0.207090846309132 0.199721000934694 0.203663441865322 0.207644878940290 0.201590748917627 0.199460698821812 0.216326528818172 0.203027758940220 0.201442214391445 2 2|0 -|/ 10354486 10354992 10354701.1 10354240 10356905 - gene protein_coding_gene FALSE TRUE AT2G24330.1 Identical to Hypothetical protein At2g24330 [Arabidopsis Thaliana] (GB:Q9ZQ34); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31080.1); similar to Os02g0631000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047497.1); similar to Os04g0672900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054229.1); similar to H0322F07.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67769.1); contains domain FAMILY NOT NAMED (PTHR22166); contains domain SUBFAMILY NOT NAMED (PTHR22166:SF1) -0.210533711220544 -1.76505123794421 0.105564322217688 1 0.763650858172079 11.7960418685130 -0.210533711220544 0.144364767215412
AT3G05100_at 6.31469519511303 6.46471743592766 6.06548332592698 6.28363405303859 6.83340153283588 6.71042288506324 7.36431478853836 7.30432563401266 6.90075594749106 6.0003519744197 6.29144920177155 6.56770747642578 6.52573804789058 6.2281337013352 6.43253722155676 6.50510111876156 6.47107863403216 6.43267347899336 6.14775027633719 0.227495882291435 0.212960023913222 0.2242738367677 0.226900372342536 0.219287185610129 0.214689841398127 0.211885730557099 0.223228697582076 0.222785124586257 0.2153072621219 0.230865576495586 0.224705480369007 0.213283936561407 0.217548343160831 0.222659892850663 0.215961268056559 0.212285567078742 0.217739103944161 0.217740397565504 3 3 + 1425135 1425500 1425305.727 1424099 1426006 + gene protein_coding_gene FALSE TRUE AT3G05100.1 similar to hypothetical protein WH5701_03239 [Synechococcus sp. WH 5701] (GB:ZP_01084496.1); similar to Os07g0667400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060575.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) -0.153297426750935 -1.76496677943723 0.105579081537060 1 0.763535867115452 13.0583352360630 -0.153297426750935 0.0515746040816124
AT3G43790_at 4.87953452578476 4.48819639032209 4.49955608728653 4.64140107990385 4.24898104724209 4.21463643570181 3.78292828104541 3.72636344666572 3.49785639891525 3.78167814412386 3.61683189590625 3.46454860620038 3.76801471416915 3.60202084380761 3.18719818819905 3.85710604659641 4.26008411598305 3.90081389335397 3.40993244966544 0.224961192534150 0.220989100995867 0.232114651596648 0.228756147771247 0.221214177978624 0.239549039048937 0.222466401741847 0.220398294182839 0.227816521850674 0.23382835249409 0.218232779163627 0.218232779163627 0.224429352416030 0.226462651884268 0.225583520632088 0.219388633091776 0.222496673923080 0.224592703386477 0.222814235322228 3 3|0 +|/ 15668752 15669801 15669123.222 15666371 15671073 + gene protein_coding_gene FALSE TRUE AT3G43790.1|AT3G43790.2|AT3G43790.3 ZIFL2 (ZINC INDUCED FACILITATOR-LIKE 2); carbohydrate transporter/ sugar porter similar to ZIF1 (ZINC INDUCED FACILITATOR 1), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G13740.1); similar to transporter, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21873.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.162904812685606 1.7646885421213 0.105627717364128 1 0.76315706439339 7.94531613787495 0.162904812685606 0.0729389320200934
AT1G66480_at 2.10298563713648 2.55973147151274 2.52812353461234 2.31773059480263 1.97406415102619 2.43138151665695 2.48862695933077 2.2493448838177 2.78045783624059 2.47245328197611 1.86992085341730 2.10579394668977 2.15076886423557 1.97720822186524 2.49807385958296 2.15595354248184 2.18294649367128 2.44036969739014 2.32613951774309 0.208432437562331 0.209034527170991 0.203751168711071 0.208713732875493 0.207803458009477 0.212953934323243 0.208791339463091 0.208635732212206 0.209980456624507 0.207137059677218 0.208625603114305 0.206054876183984 0.203530960796949 0.206787161292201 0.214735324887328 0.204944015853037 0.226241566443998 0.210367632058875 0.203094845647543 1 1 - 24809446 24810948 24810639.455 24809298 24811220 - gene protein_coding_gene FALSE TRUE AT1G66480.1 PMI2 (plastid movement impaired 2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37840.1); similar to At1g66480 [Medicago truncatula] (GB:ABE83549.1) -0.195534032872366 -1.76429928398799 0.105695793637003 1 0.762627165317372 4.68098841706365 -0.195534032872366 0.12470471221506
AT3G59990_at 9.00132625517418 9.24209616199311 9.28775430191922 9.34262088246618 9.70810066917767 9.28020401661247 9.40877708068827 9.10912970059549 8.7468330085434 8.4636953371066 8.83940715765996 8.66586017805557 8.75553464330665 8.75584694099197 8.37856041826594 8.86241601190111 8.88026183451309 8.82118552018714 8.59585837824362 0.147435394181269 0.138368467871474 0.143776799404256 0.149178854359326 0.141997351064997 0.148232784162693 0.141365931466471 0.138241829683641 0.142250553890343 0.154069392561004 0.139221253154943 0.145671108827746 0.148433292769693 0.155286621211420 0.146133553254422 0.139951092078358 0.158766272389042 0.142032488953768 0.147473806293833 3 3|0 -|/ 22166931 22167968 22167436.7 22166696 22169706 - gene protein_coding_gene FALSE TRUE AT3G59990.1|AT3G59990.2|AT3G59990.3 MAP2B (METHIONINE AMINOPEPTIDASE 2B); methionyl aminopeptidase Encodes a MAP2 like methionine aminopeptidase Identical to Methionine aminopeptidase 2B (EC 3.4.11.18) (MetAP 2B) (MAP 2B) (Peptidase M 2B) (MAP2B) [Arabidopsis Thaliana] (GB:Q56Y85;GB:Q8VZ89;GB:Q9FPV8;GB:Q9M1X7); similar to MAP2A (METHIONINE AMINOPEPTIDASE 2A), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT2G44180.1); similar to putative methionyl aminopeptidase (EC 3.4.11.18) F6E13.31 [Oryza sativa (japonica cultivar-group)] (GB:BAD03108.1); similar to Methionine aminopeptidase 2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22101.1); similar to methionine aminopeptidase 2 [Ananas comosus] (GB:ABB91775.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 2; (InterPro:IPR002468); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) 0.178546424038383 1.76427452392154 0.105700125199132 1 0.762593461347484 17.9710076316157 0.178546424038383 0.0999927439383104
AT4G16080_at 2.12828627069753 2.67362768961885 2.4916143621031 2.49331698812325 1.57436322084637 2.5014166731499 2.31851190412259 2.50867380880597 2.53953213581792 3.21487935002737 2.71406746685616 2.55347371513481 2.29615705167637 1.72234557823833 2.56900733467881 2.18996866420352 2.73139681652599 2.58095036293466 2.56386763645032 0.275289879033497 0.275289879033497 0.275289879033497 0.280630710134533 0.279227171812142 0.275289879033497 0.27921190175443 0.278841287970899 0.281817485302252 0.302660850858289 0.275289879033497 0.278908489614916 0.275289879033497 0.290560288077369 0.275289879033497 0.275289879033497 0.277719379966879 0.275919453606825 0.282306658998151 4 4 - 9101493 9102004 9101746.571 9101360 9102899 - gene protein_coding_gene FALSE TRUE AT4G16080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45940.1); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.247592970453186 -1.76403284557385 0.105742413199519 1 0.762264496024529 4.93244165528992 -0.247592970453186 0.189017352590151
AT2G21410_at 8.08133900060151 8.08673576420814 7.86728032842586 8.3971033251818 8.46315942047719 8.06112696063965 8.48301146034147 8.29018324760468 7.71055219602053 7.90479903562984 8.33102822906341 8.38153837244534 8.24106982750086 8.54590272652264 8.28871761874466 8.31746851597673 7.556602259034 8.12115126078513 7.78768833873717 0.171343386356686 0.172602045919457 0.181608479285160 0.173506767310575 0.170751071182242 0.188071683222732 0.179328048973863 0.175565134956682 0.187208626196839 0.172656905814714 0.173403403809229 0.171310940743811 0.175781963796127 0.169424729094915 0.167611779450081 0.173408428576339 0.199684554072409 0.17917463645418 0.179010629387617 2 2|0 +|/ 9174176 9175187 9174794.667 9169700 9175532 + gene protein_coding_gene FALSE TRUE AT2G21410.1 (VACUOLAR PROTON ATPASE A2); ATPase Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast. similar to VHA-A1 (VACUOLAR PROTON ATPASE A 1), ATPase [Arabidopsis thaliana] (TAIR:AT2G28520.1); similar to VHA-A3 (VACUOLAR PROTON ATPASE A3), ATPase [Arabidopsis thaliana] (TAIR:AT4G39080.1); similar to V-type ATPase, 116 kDa subunit [Medicago truncatula] (GB:ABE88373.1); similar to putative vacuolar ATPase subunit 100 kDa subunit [Mesembryanthemum crystallinum] (GB:CAD27718.1); similar to vacuolar proton-ATPase subunit-like protein [Lotus japonicus] (GB:CAE45587.1); contains InterPro domain ATPase, V0/A0 complex, 116-kDa subunit; (InterPro:IPR002490) 0.191885900811045 1.76305200352424 0.105914194587099 1 0.760929641371242 16.2282164591292 0.191885900811045 0.119840117452557
AT4G12550_at 0.564047756186101 1.34959796329097 0.612664303602076 0.6946114006043 0.946475106585223 0.760922466625246 1.01486654587494 0.970688333891782 0.94857231471837 0.917927941184706 0.769916964215137 0.618852485771614 0.665599745827345 0.490330440425075 0.93555936662679 1.21444391637880 0.298479274080261 1.06710195703048 0.986838528054466 0.281582499258057 0.281582499258057 0.281582499258057 0.301507392923193 0.281582499258057 0.299634843322430 0.281582499258057 0.281582499258057 0.299795161744776 0.281582499258057 0.281582499258057 0.281582499258057 0.287109146308837 0.281582499258057 0.281582499258057 0.281582499258057 0.299054722898034 0.285328553360423 0.282969950725755 4 4 + 7439274 7439483 7439359.4 7439112 7439802 + gene protein_coding_gene FALSE TRUE AT4G12550.1 AIR1 (Auxin-Induced in Root cultures 1); lipid binding isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12545.1); similar to P-rich protein NtEIG-C29 [Nicotiana tabacum] (GB:BAB16431.1); similar to arachidonic acid-induced DEA1 [Lycopersicon esculentum] (GB:AAS80139.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.207354619824073 -1.76293892065871 0.105934015767404 1 0.760775768400732 1.71855845797272 -0.207354619824073 0.140610077345238
AT1G11570_at 0.785257011157808 1.05706473669907 1.04673882061389 0.787230778226633 0.919680144002284 0.826414380069304 0.608976802751977 0.974819552510467 1.26672882749358 0.592435294322123 1.18417585252299 1.26868746112869 0.856642958202289 0.85034309593977 1.49175457792559 0.943585006064154 1.10319299391124 1.15786765773298 0.536265092598063 0.185741461456006 0.192233309579721 0.186330551423314 0.184968349701065 0.185808120258962 0.188623718226873 0.198248575550123 0.187474623364689 0.194354915310884 0.189078722825368 0.185682778330857 0.186140290092505 0.191443971965662 0.191050848575263 0.182453040759225 0.190806981423671 0.191843337828441 0.185693262429916 0.189337554145204 1 1 + 3883335 3883593 3883459.909 3883280 3883663 + gene protein_coding_gene FALSE TRUE AT1G11570.1 NTL (NTF2-LIKE); protein transporter similar to NTF2B (NUCLEAR TRANSPORT FACTOR 2B) [Arabidopsis thaliana] (TAIR:AT1G27970.2); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to hypothetical protein FG08477.1 [Gibberella zeae PH-1] (GB:XP_388653.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) 0.173520650286036 1.76273686328873 0.105969440767933 1 0.760500839603256 1.82852658087046 0.173520650286036 0.0921852438425196
AT1G65580_at 8.57179009485993 8.51849461099556 8.41493741055645 8.55596476499403 8.9419578022943 8.51435046955318 8.58192093749942 8.16040419238115 8.23024956094102 8.20844502426884 8.36906275907202 8.30385491350367 8.37883707074504 8.55974875063192 8.02989118934429 8.61570863425639 8.27608479175687 8.36282609196305 7.99559597712065 0.108758750824546 0.106264012837045 0.110398498195614 0.109607206804019 0.112906061777829 0.116895749964239 0.113546961734908 0.111702957891647 0.117333775780088 0.109087913394197 0.111406977539045 0.108169787688728 0.112892067480452 0.110696354586144 0.105656261662275 0.108731125855031 0.111847318915490 0.114176424469158 0.112315445675252 1 1|0 -|/ 24381312 24381915 24381524.222 24380977 24387742 - gene protein_coding_gene FALSE TRUE AT1G65580.1 FRA3 (FRAGILE FIBER3); inositol or phosphatidylinositol phosphatase Identical to Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein) (FRA3) [Arabidopsis Thaliana] (GB:Q84W55;GB:O04475;GB:Q5MK18;GB:Q9XFT1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G43900.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G31830.1); similar to 5PTASE13/AT5PTASE13, inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G05630.2); similar to Os09g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063577.1); similar to Inositol polyphosphate related phosphatase; PapD-like; WD40-like [Medicago truncatula] (GB:ABE79233.1); similar to Os08g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062285.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.182944203648898 1.76157413389310 0.106173500606194 1 0.758919090736041 16.7858601833597 0.182944203648898 0.107133769190674
AT3G55790_at 1.39422978861562 1.07509124426225 1.15753220631866 1.00187640129093 0.621834815370841 0.698698693401919 0.594009023480653 1.24454968852198 1.27615859253501 1.66775676215646 1.3217360197469 1.31011173207860 1.41330622107112 0.953911388126605 1.42892341563941 0.809992685004542 1.21948756484743 1.60021675511323 1.39609755400911 0.202596098371095 0.200368754534086 0.201995502276564 0.200414515013789 0.206325533891867 0.199179533837996 0.204236637929594 0.201252741252426 0.202663170319040 0.201971423774326 0.200921300422396 0.209700324687681 0.206706493928280 0.209189206489986 0.211157823618342 0.199179533837996 0.207123699260078 0.204068870900813 0.204776155572452 3 3 + 20719267 20719509 20719357.091 20719259 20719570 + gene protein_coding_gene FALSE TRUE AT3G55790.1 unknown protein -0.198222326993962 -1.76044732970710 0.106371594650063 1 0.757386727289538 2.32541857879303 -0.198222326993962 0.128944811723287
AT1G32930_at 2.15191589430203 2.11497459645499 2.12531345423954 2.21468833654562 2.29869086647323 2.27482053525647 2.04876580952601 2.24654506495566 1.64883646581072 2.17777663801591 2.11605069552719 2.59127512192855 2.21868414069044 2.54034713762908 2.4199697407641 2.11095587113187 2.11148040316332 2.5012022300415 2.52529305828728 0.215145504223722 0.207218163663039 0.212199748525824 0.216814034551413 0.207218163663039 0.214170334143758 0.207218163663039 0.214832348070053 0.216826862113423 0.215865578568320 0.212722087143967 0.210386697256914 0.222844401513369 0.222346960610507 0.212246824250276 0.210860444424153 0.219412044393181 0.222798109789691 0.221184763692636 1 1|0 -|/ 11932053 11932828 11932367.75 11931822 11934739 - gene protein_coding_gene FALSE TRUE AT1G32930.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17751.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.148385785195290 1.76027526202672 0.106401873838825 1 0.757152773562773 4.40623818054293 0.148385785195290 0.0383225071943677
AT3G60590_at 8.10487874958703 8.24770032805453 8.16419035547312 8.30709718267316 9.06450368780486 8.58914805470038 8.32699802866686 8.4142511670293 8.28145971170096 7.53341337169783 7.32551496833963 7.32753079956489 8.52287653539127 8.14550679661039 6.78577406207654 8.15507038788743 8.41831770431612 7.73933772462803 7.33237225293075 0.202048284597849 0.192375721279159 0.199655095203620 0.197792446839598 0.194551461479692 0.193874850798528 0.196306233987942 0.192375721279159 0.212322530003218 0.196031618178389 0.201471001309395 0.195179536019201 0.196088027377045 0.196094476640589 0.213237877616760 0.192375721279159 0.192375721279159 0.198650573723881 0.193518304123428 3 3 + 22410145 22410593 22410347.727 22409203 22410879 + gene protein_coding_gene FALSE TRUE AT3G60590.1|AT3G60590.2|AT3G60590.3 |DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48460.1); similar to Os04g0534500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053417.1); similar to hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula] (GB:ABE93586.1); similar to OSJNBb0020O11.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04786.3)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48460.1); similar to Os04g0534500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053417.1); similar to hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula] (GB:ABE93586.1); similar to OSJNBb0020O11.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04786.3); contains InterPro domain DNA breaking-rejoining enzyme, catalytic core; (InterPro:IPR011010) 0.172260214368528 1.75931878851894 0.106570329068848 1 0.75585250905445 16.1614657281461 0.172260214368528 0.0906509905987274
AT4G14920_at 5.19548699889479 5.52478730357664 4.66342842710847 4.94386654662596 5.39118316498806 5.01889779558734 5.19237855085059 5.15157548885227 5.51025688518942 5.29313883266525 5.23030846306442 5.81140666246615 5.01234920186483 5.65484426757822 5.42899153243543 5.78246531389954 5.14910900720867 5.41497587340507 5.78210807074712 0.194891104885373 0.199725992396231 0.205106854382351 0.201944738597401 0.194803230685207 0.191537374304682 0.197957636853943 0.202813297245048 0.203122465482089 0.192668462401653 0.19086938243005 0.195038477655993 0.196115522192473 0.200682752582327 0.194902014199970 0.192125195506376 0.198665096831435 0.201755438264504 0.199424138470954 4 4|0 -|/ 8531158 8532061 8531472.5 8531153 8535838 - gene protein_coding_gene FALSE TRUE AT4G14920.1 PHD finger transcription factor, putative similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G05380.1); similar to PHD finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83629.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.177329037296543 -1.75841709674055 0.106729356894714 1 0.754627051225448 10.6172293111143 -0.177329037296543 0.0990116974140006
AT2G42160_at 4.74279245937202 4.96341675873027 5.18860972188123 5.7180937202856 5.61863235804466 5.24690065726027 5.08343157619872 5.10164754718183 4.56595419161878 5.19525340420705 4.95993695144573 5.05089426916179 4.65909145662892 5.09890411661722 4.48128333180204 5.40683917423697 4.60102610997791 4.80501551430068 5.15633679230734 0.275355747072475 0.270239744170303 0.276848969111042 0.275384938542223 0.269675316665562 0.282198884182749 0.277005582617504 0.277228203039268 0.269057991778822 0.271987633403383 0.26911547578897 0.268505181496173 0.274942160632985 0.269861795080140 0.288816983310084 0.275462580512627 0.276472430811461 0.278698663128859 0.278956404209412 2 2|0 -|/ 17581949 17582918 17582440.429 17581719 17584541 - gene protein_coding_gene FALSE TRUE AT2G42160.1 zinc finger (ubiquitin-hydrolase) domain-containing protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT2G26000.2); similar to H0821G03.13 [Oryza sativa (indica cultivar-group)] (GB:CAJ86062.1); similar to Os04g0648500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054075.1); contains InterPro domain BRCA1-associated 2; (InterPro:IPR011422); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.190298049237124 1.75830310715247 0.106749476059614 1 0.754472155080163 10.1356349306522 0.190298049237124 0.118329999008620
AT4G25890_at 6.1461671980437 6.2581295501338 5.6736162439383 5.47925621264311 5.18331644687165 5.88731908543327 6.28689727405046 7.0624227730622 6.45755002281224 5.73096989555258 6.33848970439541 6.9934093599197 6.30162024354373 6.4374751799591 7.43778957915945 6.16006528669182 6.31421639432426 6.27917961283282 6.223962194524 0.205897386686736 0.204289161863568 0.208869136013723 0.205057092268697 0.214524012381809 0.211913351298112 0.212769616298442 0.211551153505242 0.212083140954030 0.217356646368688 0.204275496964226 0.211427483799477 0.213615477941671 0.211189433818577 0.209425708891219 0.211569343742269 0.213014397028844 0.204275496964226 0.213338380707106 4 4|0 -|/ 13159643 13160376 13160018.1 13159493 13160504 - gene protein_coding_gene FALSE TRUE AT4G25890.1 60S acidic ribosomal protein P3 (RPP3A) Identical to 60S acidic ribosomal protein P3-1 (RPP3A) [Arabidopsis Thaliana] (GB:Q9SVZ6); similar to 60S acidic ribosomal protein P3 (RPP3B) [Arabidopsis thaliana] (TAIR:AT5G57290.1); similar to Os06g0701400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058484.1); similar to 60S acidic ribosomal protein P3 (P1/P2-like) (P3A) (GB:O24413); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.243620284563639 -1.75828591423424 0.106752510907672 1 0.754448792723723 12.3322779518885 -0.243620284563639 0.185368196414062
AT3G54320_at 1.48118419203709 1.56398295682118 1.51415884921133 1.87257639772513 1.67531031689878 1.68110468648853 1.38714753214018 1.58308981598019 1.33034512905704 1.59977011251736 1.62920578230824 1.7474785417501 1.78044445906007 1.23544872413965 1.56599308376037 1.67439965119788 2.04454318321853 1.90931147097942 1.73935816052748 0.158772117158449 0.158641481494242 0.160989356161382 0.163499283987481 0.158886119994781 0.163924373320580 0.159849171953517 0.160209375124288 0.163454670365439 0.163557287004384 0.161027486848937 0.159446224141533 0.161609706197103 0.159149119165751 0.162530897862486 0.163297009313862 0.163630949538477 0.16024432396294 0.162065129980901 3 3 + 20125855 20129388 20127823.857 20125662 20129617 + gene protein_coding_gene FALSE TRUE AT3G54320.1|AT3G54320.2|AT3G54320.3 WRI1 (WRINKLED 1); DNA binding / transcription factor WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). similar to ovule development protein, putative [Arabidopsis thaliana] (TAIR:AT1G79700.2); similar to ovule development protein, putative [Arabidopsis thaliana] (TAIR:AT1G16060.1); similar to AP2/EREBP transcription factor [Brassica napus] (GB:ABD16282.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.161899208177051 1.75822884292258 0.106762585542637 1 0.754371243017173 3.22224146645567 0.161899208177051 0.0721340597691215
AT3G14730_at 2.08894001452084 2.22912515871166 2.11570865359289 2.15653494347421 1.52883581652487 1.60586068510859 2.30339940890351 2.46997197387093 2.28923897695831 2.01261974505758 2.22071250090418 2.27523316145215 2.20429037663287 2.62046929572845 2.18311807575807 2.43184447992434 2.56898477336950 2.39330222670496 2.41479084551901 0.198183876266072 0.196090815722628 0.197076242117961 0.201919195971778 0.197317529600383 0.195956853961261 0.191408469714473 0.204480596273865 0.201259341667401 0.199491149076318 0.191347947797859 0.195714883048747 0.203086655019820 0.196419651170346 0.192954528605489 0.196563117468509 0.204854150695292 0.191861111935316 0.195617197212253 3 3 - 4949415 4949957 4949718.182 4949392 4951353 - gene protein_coding_gene FALSE TRUE AT3G14730.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB62584.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.148881471097789 -1.75805887680893 0.106792594265793 1 0.75414029717567 4.36286085708225 -0.148881471097789 0.0405841451409812
AT2G04380_at 1.37056541160068 1.23685137499921 0.964650831964443 0.96501932638815 2.05349486896339 1.44419592070336 1.90090851571804 1.32913022706890 2.12285643134209 1.12581730778809 1.42814007298469 1.01404729570050 1.67490516212452 1.23826146004369 1.11761944399150 1.03204135528371 1.32467341778413 1.79611191153259 1.69636728686496 0.190623410900406 0.191900904640408 0.191515078881416 0.200252705019580 0.205821593835574 0.192357583421810 0.197060651430704 0.191725712627662 0.190726686099140 0.190623410900406 0.198336186830718 0.195625701928032 0.190891332832923 0.191509352736064 0.190623410900406 0.190623410900406 0.194535338925277 0.195927412610047 0.194331698823999 2 2 + 1525639 1526456 1526138.636 1525639 1526764 + gene protein_coding_gene FALSE TRUE AT2G04380.1 unknown protein -0.211322819538127 -1.75802065195784 0.106799344184774 1 0.754088359763792 2.89638807147363 -0.211322819538127 0.146438934137039
AT4G18330_at 2.34601096909146 2.15807849332777 2.62161598369604 2.72522047914933 2.15924210752572 2.28426092492854 2.03884545693704 2.05187083616104 2.66783332625285 2.11327246873852 2.37786712846165 2.08275619639414 2.32824736678768 2.69328615760752 1.93494777279248 2.30576762092925 2.49109571347122 2.42001004144902 2.2053383434737 0.201597020363221 0.192641749768161 0.200589562243935 0.194766133656971 0.192111823469669 0.1960392188474 0.197956901641512 0.198584068666997 0.195941758149745 0.206246111545838 0.199957439830751 0.196006506808680 0.195321839937772 0.197208511701317 0.198575258129286 0.193353123484409 0.194792537129536 0.198288365367647 0.19612722453356 4 4|0 +|/ 10127115 10127925 10127612.4 10126590 10128745 + gene protein_coding_gene FALSE TRUE AT4G18330.1|AT4G18330.2 eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative similar to EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit), translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G04170.1); similar to Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) (ISS) [Ostreococcus tauri] (GB:CAL53687.1); similar to Os12g0607100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067233.1); similar to Os12g0176800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066299.1); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795)|similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT2G18720.1); similar to EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit), translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G04170.1); similar to PREDICTED: similar to eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked isoform 3 [Tribolium castaneum] (GB:XP_975907.1); similar to Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) (ISS) [Ostreococcus tauri] (GB:CAL53687.1); similar to translation initiation factor 2 gamma subunit [Lithobius forficatus] (GB:CAG29663.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.149657985930257 1.75800404247142 0.106802277284048 1 0.754065792068855 4.62717413763127 0.149657985930257 0.0430387582573225
AT4G32640_at 7.19585229312195 6.61632841030877 6.4304422813024 6.38051345991016 6.78861395030016 6.20969550871324 6.32816577485788 6.2279832589581 6.43334055609889 6.40842136110097 6.70339718092281 7.35769555475371 7.11739864305524 6.80167780325042 6.7981425432217 6.93119771362194 7.06552115655767 6.47915312344975 6.20715310317345 0.243892866138384 0.233315719517725 0.233606922081418 0.255505304953623 0.234413575492814 0.255702175414669 0.232044722846488 0.242573899215806 0.238596555333558 0.241680236200959 0.236387756828578 0.229854376853667 0.234417258920034 0.251878847138339 0.230780815104222 0.234650226578883 0.248378476821842 0.239302894029830 0.235694193238413 4 4|0 +|/ 15748742 15750524 15749679.1 15742037 15750550 + gene protein_coding_gene FALSE TRUE AT4G32640.1 sec23/sec24 transport protein-related Identical to Putative protein transport protein Sec24-like At4g32640 [Arabidopsis Thaliana] (GB:Q9M081;GB:O65535); similar to CEF (CLONE EIGHTY-FOUR), transporter [Arabidopsis thaliana] (TAIR:AT3G44340.2); similar to Protein transport protein Sec24-like CEF, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93724.1); similar to retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97661.1); similar to Os12g0430000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066677.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.208684245237266 1.75799367626333 0.106804107908414 1 0.754051707317068 13.1504050196734 0.208684245237266 0.143073817624873
AT1G18700_at 6.08306759789004 6.2313025137217 5.96301506004097 5.97801083413841 5.69077165062778 5.90974584868944 5.34118766655991 5.35967051871062 5.63649205119783 5.96211596202998 6.16925539996399 6.6999799269268 6.4979911151125 6.11532498347978 5.9858911871814 6.32417000166867 6.35139323213148 4.98555127289422 6.31590295612738 0.209150216111587 0.200671440458759 0.201058430036186 0.199269882768510 0.199034660766281 0.205699929249991 0.199016576044691 0.200093806258021 0.217410326355047 0.202507332718097 0.200792347793826 0.208143264134360 0.200602607024299 0.209390937198948 0.204807689367367 0.20330743289229 0.223628404083384 0.211575323882377 0.203881188639701 1 1|0 +|/ 6442280 6443012 6442742.1 6437523 6444068 + gene protein_coding_gene FALSE TRUE AT1G18700.1|AT1G18700.2 DNAJ heat shock N-terminal domain-containing protein|heat shock protein binding similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT1G18690.1); similar to Os07g0632600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060367.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL52843.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.150634878810854 1.75798285415737 0.106806019072499 1 0.754037003174565 11.8759456094831 0.150634878810854 0.0459458596604714
AT4G11030_at 2.20985362696389 1.90974821851988 1.88049596256618 2.18792658160891 1.65581061761947 1.50890637096551 1.79287230415808 1.75817877490729 2.08504904057188 2.45187817866646 2.01143565788865 2.00919816676439 1.7592904231822 2.03474208106424 2.05560282127313 1.78775115225591 2.35382470160549 2.05336758666647 2.15137748347372 0.179325094719088 0.183114342919975 0.189855342652160 0.182390051855234 0.179806193975987 0.184547070308606 0.178839318811635 0.186043382147398 0.186387595347342 0.181220926388928 0.188559049735856 0.183485572561696 0.187719369177805 0.182007212148720 0.178271940324452 0.180566951227528 0.193920110456506 0.184782004718841 0.186230762594958 4 0|4 /|+ 6741449 6742201 6741839.9 6738116 6742225 + gene protein_coding_gene FALSE TRUE AT4G11030.1 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) [Arabidopsis thaliana] (TAIR:AT1G49430.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to acyl-CoA synthetase [Brassica napus] (GB:CAA64327.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00145.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.165330837506862 -1.75755009300469 0.106882469243509 1 0.753449043092698 3.98176729453444 -0.165330837506862 0.078803807909042
AT2G32300_at 1.05528218074944 1.05296149048767 1.13029417190202 1.52236058274755 1.11950353134048 1.33491340154368 1.18832505955481 0.84296176454197 1.33939654333524 1.48575074451780 1.03898342658564 1.12962190020366 1.86675823141535 1.16875637237411 1.10614892700490 1.35443618993349 1.65730647131061 1.56115696090986 0.923030261625457 0.196719146486928 0.205201847563205 0.201371795874455 0.200757678414351 0.198057492205856 0.197339308661896 0.201777714012412 0.201128676834141 0.197422977134971 0.196719146486928 0.197381264285581 0.196719146486928 0.201197605346850 0.212318546890979 0.202552126508209 0.201912946272063 0.207253838737299 0.207718171784284 0.203598577400014 2 2 + 13729866 13730514 13730093.455 13729504 13730667 + gene protein_coding_gene FALSE TRUE AT2G32300.1 UCC1 (UCLACYANIN 1); copper ion binding Encodes a uclacyanin, a protein precursor that is closely related to precursors of stellacyanins and a blue copper protein from pea pods. similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G31050.1); similar to Os02g0758800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048178.1); similar to putative blue copper binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03007.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.176444420762165 1.75721981158342 0.106940848963001 1 0.753000364927887 2.46071956108847 0.176444420762165 0.0978024788417674
AT4G17010_at 5.58454275368065 5.87927964847422 5.37997076954344 5.41706324293189 5.04044992783227 5.67902717841618 5.00202650215759 5.04989487945589 4.50907138138494 4.15517175681014 4.20689489941555 3.87968578282149 4.00210525618391 4.03481114948795 3.73311600479574 4.23163279685799 4.36879955015641 4.01255089108922 4.66985782786904 0.235686678087617 0.244344825783085 0.229238269628066 0.23244770279162 0.237538500627980 0.239614424947984 0.233249569549344 0.236933628048571 0.230233350248475 0.231262254436257 0.232910743868672 0.233497765186241 0.228606376152244 0.236946439812528 0.23684955734689 0.233778863113935 0.228363368772475 0.230479821608568 0.231412615101007 4 4|0 +|/ 9576501 9577612 9577158.4 9575831 9577986 + gene protein_coding_gene FALSE TRUE AT4G17010.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23134.1); similar to Os04g0431800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052826.1) -0.192904473465743 -1.75715565575554 0.106952192330032 1 0.752913216074676 9.63073179449772 -0.192904473465743 0.122162126684512
AT1G55460_at 6.53752185520844 6.85194153482973 6.85709713502539 6.73482720572932 7.26339992970923 6.93543841552275 6.90304499548082 6.94761906527475 7.08891307180724 7.53001084551379 7.67523508688239 7.70319946594739 7.53316583890905 7.75401037267113 7.17410978514772 7.62398737059579 7.54599032242404 7.17759395466163 7.36279884734774 0.189425546173886 0.196782290102714 0.193829805514119 0.187848429206494 0.192702255888378 0.199649387768005 0.198318787254049 0.190173906187745 0.202397949556774 0.194517627513073 0.200216089867338 0.191834095918506 0.198690645912848 0.190094089902946 0.192244346532893 0.190618016762043 0.18917438830389 0.203165979779923 0.195563969610888 1 1 + 20711882 20712441 20712124.5 20711144 20712690 + gene protein_coding_gene FALSE TRUE AT1G55460.1 Kin17 DNA-binding protein-related similar to Kin17 DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G51795.1); similar to Os03g0570300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050519.1); similar to hypothetical protein [Oryza sativa] (GB:AAG59654.1); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) 0.166914705948437 1.75699294184716 0.106980966590850 1 0.752692193961762 14.3041874902031 0.166914705948437 0.0817864603936636
AT3G16040_at 1.86819320325509 1.78367147032212 2.24578570450509 2.27741769163848 1.81869160107327 2.18327039628751 2.11800351199688 1.89277587227204 2.06233414294740 2.25706230087124 2.21219864734714 2.128370756068 2.54906946468954 2.16912568896217 2.43959948744926 2.54942305569751 2.0080500145134 2.26316958395431 2.21515426864555 0.136710491606982 0.139145408810618 0.138807471188610 0.146654065530361 0.136767540889853 0.138554379973067 0.140398080574511 0.142629409225927 0.146773808966685 0.139508976727551 0.140711397495006 0.141834036308272 0.151746510258264 0.140785133103184 0.143378032334701 0.142602018387774 0.143299586553582 0.136240271843054 0.142334760299528 3 3|0 +|/ 5443485 5443779 5443672.111 5443097 5443958 + gene protein_coding_gene FALSE TRUE AT3G16040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15270.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77733.1) 0.163661300214161 1.75690347186687 0.106996791407232 1 0.752570667107689 4.25750588549709 0.163661300214161 0.0757872136997857
AT1G61900_at 6.84097196588224 7.21953258208441 7.00361021948898 7.43989426881378 7.88975666960005 7.77845500647569 7.59221465777243 7.83044102553067 8.03794468911759 7.37916750786414 8.55400523439874 7.8163938582455 8.21675439757232 8.20386293437914 7.45109143675354 7.71019391150554 7.45334229909747 8.05128469413725 7.7450765444512 0.225276230134342 0.226208467302910 0.237772530789976 0.234277526897674 0.223327456151857 0.235954648774206 0.230601975210006 0.220807840830079 0.232473945039149 0.219857182758338 0.211437038571760 0.215322416966517 0.225772699449922 0.224495389071405 0.245600056859825 0.210452518884382 0.228350250781811 0.231079171572553 0.220791690570509 1 0|1 /|- 22886173 22887061 22886566.75 22885880 22888718 - gene protein_coding_gene FALSE TRUE AT1G61900.1|AT1G61900.2 Identical to Uncharacterized GPI-anchored protein At1g61900 precursor [Arabidopsis Thaliana] (GB:Q8GUI4;GB:O80696;GB:Q3ECK6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30700.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83923.1); similar to Os07g0102300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058682.1)|Identical to Uncharacterized GPI-anchored protein At1g61900 precursor [Arabidopsis Thaliana] (GB:Q8GUI4;GB:O80696;GB:Q3ECK6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30700.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83923.1) 0.184262749280364 1.75683811195367 0.107008353143239 1 0.752481890923774 15.2757823875754 0.184262749280364 0.109830662804507
AT4G31970_at 2.00282108501345 1.74738751610064 1.67060836122714 1.92527820419462 1.34421606753307 1.77439177860458 1.74232586217 1.90859967623597 2.21659106370926 1.95312637059678 1.76354986750722 1.8506974471338 2.03970909782464 2.14570307607583 1.58209270885076 1.42847042811736 1.97988179988904 1.98202121224529 1.92663622440176 0.133072711281789 0.136637742023185 0.141849540547093 0.132631618273744 0.129943296745673 0.129699959888202 0.130058363390701 0.135408810356733 0.138097138070002 0.139023959075075 0.140042773112768 0.134315707507533 0.140439618327340 0.146189030576452 0.131280048439689 0.132237494085299 0.130762743740834 0.144737367780092 0.139780493763011 4 4 + 15463894 15464339 15464125.182 15462414 15464364 + gene protein_coding_gene FALSE TRUE AT4G31970.1 CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2); oxygen binding member of CYP82C similar to CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31950.1); similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to cytochrome P450 [Ammi majus] (GB:AAS90126.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.178631056760302 -1.75669335838080 0.107033963112486 1 0.752285283075429 3.70377036435565 -0.178631056760302 0.101322162400024
AT1G32630_at 5.43279882751823 5.31576867203565 5.69169574030651 5.03590712276137 5.79399943989525 5.71265387836439 5.25596517239488 5.12544480930955 4.82380637361853 4.84310864918636 5.27431606927291 4.98568442716573 5.03419395200853 4.85752721318235 4.4290286608229 4.86623590646919 5.37078359641006 4.62308374781299 4.81100099707998 0.198045276835492 0.193014641535634 0.187928552335146 0.187928552335146 0.195416613983768 0.191552651453020 0.193303506367049 0.196471356897002 0.193305074342850 0.187928552335146 0.188662054673859 0.187928552335146 0.192110097544266 0.191112830777234 0.200746545861216 0.188773621330916 0.196397459148133 0.191208346563068 0.195913716063887 1 1 + 11797972 11798274 11798129.364 11797315 11798582 + gene protein_coding_gene FALSE TRUE AT1G32630.1 unknown protein 0.190102182516048 1.75660663878750 0.107049308296761 1 0.752167502418023 10.2985685594589 0.190102182516048 0.118312631935340
AT1G24520_at 3.20478048677352 2.90826176780719 3.22551796295478 3.00204592315282 2.97429383828542 3.08058743627458 3.2068600985836 2.95640302804829 5.00254724093401 2.98355320039704 3.51443399256216 3.17378160248366 3.58128805029221 3.17153594009149 3.33579632964329 3.51159030264598 3.3794421315257 3.28309501769699 3.11906801999324 0.217731933480953 0.213220502172652 0.223488468127229 0.227380290664489 0.216561649619075 0.224634561751093 0.213231831893109 0.217367410204195 0.239456952839374 0.226005062881128 0.211882332606863 0.218034404033219 0.219492085220351 0.225737951635948 0.21292464623314 0.211195139697016 0.212457433480353 0.231379863550789 0.217029886183930 1 1 + 8688697 8689013 8688880.545 8688617 8689255 + gene protein_coding_gene FALSE TRUE AT1G24520.1 BCP1 (Brassica campestris pollen protein 1) Male fertility gene acting on tapetum and microspore similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26110.1); similar to Anther-specific protein BCP1 (GB:P41507); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047) -0.165658727354998 -1.75609541193646 0.107139811209305 1 0.751473226486395 6.60514043838958 -0.165658727354998 0.0796597096785437
AT4G35220_at 7.57812071187132 7.83536262993218 7.65627935966918 7.72508210150862 7.50500392976626 8.10370285980778 6.97395954086293 7.53362103254462 6.9131304404083 7.0626749405403 6.70550430734589 6.80512763815184 7.45350387619152 6.82317209018856 6.94838479564542 7.172382579312 7.70917922553129 7.20240544787955 6.85435799513661 0.214463428343375 0.215143240169051 0.220172516940402 0.219985738333193 0.213711311256541 0.222182484246320 0.212951364652902 0.223111691593282 0.231456152272364 0.219502690663456 0.211235316135021 0.215031118075579 0.216452147019410 0.221858714738786 0.216281430715161 0.211235316135021 0.21267757776019 0.213911874436311 0.216886989884697 4 4|0 +|/ 16752877 16753947 16753406.4 16752576 16754310 + gene protein_coding_gene FALSE TRUE AT4G35220.1 cyclase family protein similar to cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G44542.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC92446.1); similar to Os08g0319900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061523.1); contains InterPro domain Putative cyclase; (InterPro:IPR007325) 0.213160393443776 1.75566321478814 0.107216377369915 1 0.75088635918673 14.6368141642749 0.213160393443776 0.149125393629507
AT4G23050_at 7.42045778149082 7.2205140060789 7.53596679553699 7.4327921049778 7.59576579154221 7.39149906918342 7.1926298515946 7.09879089617332 6.82786781972638 7.00554189705552 7.04536833648804 6.67094748335882 6.93456083091408 7.02110005565744 6.423250695585 7.01945370225545 7.2647551383879 7.46186041188338 6.95199669339209 0.157499983746286 0.152218045357248 0.168012537378707 0.153637028830915 0.163915666447615 0.157438881235158 0.159119488058991 0.156650858149864 0.160315412414496 0.156785740379981 0.168531354279953 0.156906210919951 0.157586224174155 0.169266037059719 0.16469451130497 0.153511227724453 0.167334559635264 0.158808520186277 0.161524777303603 4 4|0 +|/ 12082773 12083676 12083241.2 12080071 12084267 + gene protein_coding_gene FALSE TRUE AT4G23050.1|AT4G23050.2 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67890.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06412.1); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67890.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06620.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06412.1); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.153800542450311 1.75503451297982 0.107327843730745 1 0.750032797902253 14.3153674796761 0.153800542450311 0.0550393205900802
AT1G58180_at 9.8419451868178 9.82875362775306 10.4362099007438 10.2229707706884 10.6814079481954 10.3611246935248 9.72590942983425 9.61824141527947 9.7439943343739 9.49490160637855 9.4611353606374 8.45084834387172 9.44169214760304 9.55460878773604 8.20684608694712 9.43804969385244 9.2785103721685 9.51332454387381 9.32001614017932 0.12289752696314 0.119911525775247 0.126347309023783 0.125203041415075 0.127105896514612 0.123416556205212 0.125301941165301 0.125547374285108 0.134575872345695 0.128201400454517 0.119911525775247 0.137994878487814 0.122978780114071 0.125990577189173 0.132969331399568 0.126079558788446 0.14059953507879 0.126157960981849 0.119911525775247 1 0|1 /|- 21542173 21542532 21542405.429 21541600 21543579 - gene protein_coding_gene FALSE TRUE AT1G58180.1|AT1G58180.2|AT1G58180.3 carbonic anhydrase family protein / carbonate dehydratase family protein|carbonate dehydratase/ zinc ion binding similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); similar to carbonic anhydrase 3 [Flaveria linearis] (GB:ABC41659.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765)|similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to carbonic anhydrase 3 [Flaveria pringlei] (GB:ABC41658.1); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); similar to carbonic anhydrase 3 [Flaveria linearis] (GB:ABC41659.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765)|similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to carbonic anhydrase 3 [Flaveria pringlei] (GB:ABC41658.1); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) 0.160102735071330 1.75465627321739 0.107394954599986 1 0.749519354496747 19.4334525103031 0.160102735071330 0.0691826377126161
AT2G27940_at 1.13456283244941 1.48876691537753 1.26303658937774 0.896688033395193 1.39877115525850 1.41206519458358 1.59455816286614 1.48681331160846 1.87370001817909 1.68382987386924 1.4269677272577 1.25556138562159 1.68923379298962 1.55535895847044 1.72660178425817 1.24747468955771 1.80044471643729 2.00186903309481 1.68459540748530 0.219610162956584 0.213135342636212 0.216808020119503 0.222808838868935 0.214224340125799 0.219052787787790 0.215652087398884 0.217298798578788 0.212199108832618 0.214498793710353 0.215903000603285 0.223849953083301 0.223031461649802 0.223211242464499 0.219978418534554 0.220218607528173 0.218649807688869 0.219769248235672 0.213931545956285 2 2|0 +|/ 11905171 11905792 11905487.5 11905019 11905944 + gene protein_coding_gene FALSE TRUE AT2G27940.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2E (ATL2E) [Arabidopsis Thaliana] (GB:Q9SJJ7); similar to ATL6 (Arabidopsis T?xicos en Levadura 6), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G05200.1); similar to RING/C3HC4/PHD zinc finger-like protein [Cucumis melo] (GB:AAO45753.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.171485575652628 -1.75437024684126 0.107445729277477 1 0.749131124721938 3.0020648297673 -0.171485575652628 0.0901642170051034
AT4G28706_at 8.2693868943193 8.39129558885556 7.84852512233692 7.64676170996058 8.13369185345212 7.8968269749024 8.74133184354444 8.73880201703204 7.96735308501348 8.61213960530323 8.68326912312941 9.116219335716 8.29851735475192 8.64846930725186 8.615572542266 8.63715473656075 8.09872447492117 8.60905000012311 8.15351304904736 0.174609492912924 0.178542796665136 0.187918478469275 0.188956572148874 0.189098655725521 0.189105256312335 0.180937476128820 0.179863722144071 0.197325396266761 0.175702929481441 0.176454296874354 0.174609492912924 0.174609492912924 0.189139901735794 0.197896499781534 0.180669004472441 0.189605348107995 0.19055878845579 0.175676275082133 4 4|0 +|/ 14169390 14170585 14169809.75 14167740 14170807 + gene protein_coding_gene FALSE TRUE AT4G28706.1|AT4G28706.2|AT4G28706.3 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT5G43910.2); similar to Os08g0566400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062541.1); similar to Carbohydrate kinase, PfkB [Medicago truncatula] (GB:ABE82653.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139)|similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT5G43910.2); similar to Os08g0566400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062541.1); similar to Carbohydrate kinase, PfkB [Medicago truncatula] (GB:ABE82653.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.154857903944744 -1.75391398154244 0.107526769237637 1 0.748511893963397 16.6246814284478 -0.154857903944744 0.057832780531395
AT2G33500_at 3.62975617100586 3.36008442141627 3.14756356080414 3.2146867655107 3.62609212296810 3.194730866283 3.18482342954163 3.48161566743395 3.42717800349172 3.32558153388605 4.44853393416213 4.25400362416359 3.91084670265598 3.92227251911442 4.07097750985962 4.12231612344271 4.06347149271873 2.68365156075202 3.6213722070251 0.237891354096488 0.233101083632619 0.241429075859470 0.245141032496433 0.239489925222514 0.239332741959436 0.231528414962946 0.235426997610313 0.251709946053310 0.236445255704812 0.23298342602425 0.231528414962946 0.237594596121237 0.243074754346696 0.2376707574063 0.231528414962946 0.241914148972367 0.238551960351648 0.234990910404389 2 2|0 -|/ 14195481 14196506 14195953.4 14195063 14197330 - gene protein_coding_gene FALSE TRUE AT2G33500.1|AT2G33500.2 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 14 (COL14) [Arabidopsis Thaliana] (GB:O22800;GB:Q8H0T2;GB:Q8L7Q6); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G28050.1); similar to Os08g0536300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062363.1); similar to zinc-finger protein C60910-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01231.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.179081837549877 1.75313202563845 0.107665785459084 1 0.747450839298255 7.05119567470026 0.179081837549877 0.102583112250011
AT4G15040_at 0.553840666104997 0.668368941113188 0.807650341410319 0.593009312853073 0.484207404424312 0.645664448897653 0.741690145232927 0.513610233578108 1.12918723455036 0.924874693702344 0.632707097502077 0.866691262049622 0.546216353521087 0.727304795585514 0.389224175130361 0.520536678449249 0.854964505411022 0.67285542117894 0.884893609144199 0.221944574348872 0.219988401839953 0.22125037016328 0.224680916326707 0.217693599834198 0.223819449159643 0.217693599834198 0.219731635980641 0.231498091705587 0.22185476395965 0.221867006621017 0.217693599834198 0.225560270951548 0.217951049565924 0.227764417079352 0.225160131512424 0.221328344631902 0.228856221317144 0.221796719920894 4 4|0 -|/ 8581414 8582014 8581651 8581368 8584117 - gene protein_coding_gene FALSE TRUE AT4G15040.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59120.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G46850.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59100.1); similar to Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; Proteinase inhibitor, propeptide [Medicago truncatula] (GB:ABE86992.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.157541964653224 -1.75291482214831 0.107704428728526 1 0.74715615429769 1.44148737765305 -0.157541964653224 0.0641181705795233
AT1G29980_at 3.21532149574344 3.134106064964 2.33077393328633 2.15405592143107 2.53987027087832 2.20771971065748 2.82163434110632 2.59752518642576 2.80978129387844 3.05194618606745 4.16611944758760 4.76350017957238 3.0797388808796 3.43648586429228 5.02272424215666 3.7317864676323 2.94278377469827 3.98292873066882 2.92536710747575 0.268537157767143 0.273022911005253 0.283334865430977 0.280488349155191 0.270909423630644 0.27547869767757 0.261763276128656 0.263210222659279 0.265675597602015 0.261763276128656 0.272583745185540 0.279988233027518 0.264098567734724 0.265011406419019 0.274230378462266 0.267606470795815 0.261763276128656 0.273896031519340 0.261763276128656 1 1 - 10503456 10503899 10503676 10503262 10506101 - gene protein_coding_gene FALSE TRUE AT1G29980.1|AT1G29980.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34510.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); similar to Os01g0756600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044289.1); similar to Os01g0531400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043243.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) 0.163842553149430 1.75154856621175 0.107947790487383 1 0.745302958365552 6.03502085434986 0.163842553149430 0.0770771776107452
AT4G22470_at 1.82250646513415 1.70526111549982 0.931938752090486 0.723067307369126 1.35627928247378 1.96506225828994 1.21977447839631 1.18945360617083 0.614661289718313 1.68592220060810 0.602327657990459 1.33237435086798 0.602488999506581 0.814109879284717 1.49613049088544 1.12422340781038 0.95913596016071 0.660078583826233 0.942051516404141 0.199166398876680 0.201549786289022 0.200046551395682 0.204960951507802 0.198105188874257 0.196111167601203 0.200386286421714 0.197344318305225 0.203576457343761 0.196111167601203 0.201794954905955 0.202873840425509 0.204634458201638 0.205229091954239 0.196111167601203 0.199732808254014 0.208479364288567 0.204464411439932 0.209110711421022 4 4 - 11840341 11840852 11840604.818 11840146 11841462 - gene protein_coding_gene FALSE TRUE AT4G22470.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22485.1); similar to pherophorin-dz1 protein [Volvox carteri f. nagariensis] (GB:CAD22154.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.186090842764867 -1.75152441213869 0.107952097350545 1 0.745270202426576 2.37903640911226 -0.186090842764867 0.113335588090928
AT1G53460_at 5.9274989845218 6.5812734200278 6.13674508815776 6.62949522709105 7.01293717329718 6.78880689170204 6.56061512729315 6.7815491795543 6.84966878108036 6.36609111500766 6.18192029478949 5.83739825365044 5.78851837788469 5.97433778611207 6.26038188254822 6.62891473317315 6.68657835622802 6.06550176931638 7.14422380076465 0.222222216980298 0.220568223896152 0.221768658712819 0.222572873779188 0.214474219690336 0.218500107966433 0.219009220772018 0.218172914585959 0.212854538257227 0.230523659138994 0.224598512363965 0.221832817830238 0.215173472465016 0.210648189625209 0.214822514475343 0.220128754793839 0.218196538566132 0.21472184597689 0.221084945789592 1 1 - 19958235 19959716 19958516.273 19958158 19960300 - gene protein_coding_gene FALSE TRUE AT1G53460.1 similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G55040.1); similar to Zn-finger in Ran binding protein and others, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95671.1); similar to Os03g0712200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051062.1); similar to Os01g0203300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042331.1) -0.214727691679333 -1.75119757554887 0.108010390171779 1 0.744826994302039 13.0346677184541 -0.214727691679333 0.151782846106656
AT4G34020_at 2.88609624352623 2.55611271900463 2.80121393867789 2.64640592748184 3.56746630510277 2.89761439573095 3.27634397650459 2.33863820027841 2.31740745765632 1.72865383620995 2.36585622941855 2.63594049259213 2.86368562854016 2.75169803513353 2.07911308320546 2.50921572895452 2.32422097175382 2.17127160681549 2.40239113114007 0.203903667299520 0.203141326004083 0.210430384298605 0.206604339925638 0.203825211743558 0.210170364706482 0.206477205377358 0.211493941170566 0.225628931850588 0.217112178517927 0.207492677797238 0.205491991466886 0.205524960670666 0.203643464863894 0.204948596153856 0.211423727559168 0.21570623259077 0.220016324123824 0.211120614682923 4 4|0 -|/ 16299277 16300410 16299901.333 16298267 16300943 - gene protein_coding_gene FALSE TRUE AT4G34020.1|AT4G34020.2 DJ-1 family protein similar to DJ-1 family protein [Arabidopsis thaliana] (TAIR:AT1G53280.1); similar to 'unknown protein, similar to DJ-1/PfpI family, PF01965' [Oryza sativa (japonica cultivar-group)] (GB:AAT69656.1); contains InterPro domain DJ-1; (InterPro:IPR006287); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818)|similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G14990.3); similar to 'unknown protein, similar to DJ-1/PfpI family, PF01965' [Oryza sativa (japonica cultivar-group)] (GB:AAT69656.1); contains InterPro domain DJ-1; (InterPro:IPR006287); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) 0.263509218651414 1.75094963567064 0.108054630360444 1 0.744490803096825 5.17729114514866 0.263509218651414 0.209163487850368
AT1G65910_at 1.24092081328737 1.19889776448086 1.24156924715746 1.34320160997017 0.806294695136466 0.80113340328368 1.52833979284996 1.30369656167542 1.28012356309066 1.15651862687262 1.33075978569485 1.37082326398170 0.899376588340724 1.41528398190386 1.51399843851521 1.31378998254135 1.47646879868928 0.986394543108276 1.51347487556054 0.193215589624545 0.200137689172724 0.199859643992023 0.194315776031839 0.194844189484323 0.204959148325294 0.19745885269575 0.193257217148229 0.203283251554532 0.211187446994881 0.202790211440402 0.201155620778443 0.196754880770036 0.200918933155625 0.192661517794313 0.195787127498582 0.192923150734409 0.205980483918049 0.192718785066589 1 1 - 24524600 24525132 24524904.636 24524454 24527827 - gene protein_coding_gene FALSE TRUE AT1G65910.1 ANAC028 (Arabidopsis NAC domain containing protein 28); transcription factor similar to ANAC086 (Arabidopsis NAC domain containing protein 86), transcription factor [Arabidopsis thaliana] (TAIR:AT5G17260.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15294.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.149128879923747 -1.75081233647575 0.108079135848405 1 0.744304644500526 2.48554054165760 -0.149128879923747 0.0432935228253085
AT3G53910_at 0.690007204855905 0.784847056539287 0.70328022235103 0.416131759909600 0.41054696059891 0.295526622648323 0.632125485176876 0.278694750546759 0.931091435102705 0.282806044305393 0.260380911189995 0.704589126318138 0.600434799585874 0.0743610545072386 0.437656400911507 -0.131299274591379 0.68527125948834 0.635477786679973 0.592573969920824 0.216947042093631 0.211771644286371 0.214038938062264 0.212663847398379 0.211771644286371 0.220291587711796 0.211771644286371 0.21352998359657 0.221385983557285 0.218984210164157 0.218384825606308 0.217058555540899 0.224173337963571 0.217834505812370 0.212562797041567 0.213898306669308 0.225111763471484 0.215776540545098 0.218990507881821 3 0|3 /|- 19970988 19971168 19971093.286 19970834 19971424 - gene protein_coding_gene FALSE TRUE AT3G53910.1 malate dehydrogenase-related similar to MDH (malate dehydrogenase), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G47520.1); similar to NAD-malate dehydrogenase [Nicotiana tabacum] (GB:CAB45387.1); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) -0.166922687333919 -1.75043130192316 0.108147170098748 1 0.743788054488845 1.03165308672210 -0.166922687333919 0.0829204201146225
AT1G09730_at 6.96635714497873 7.2404208257686 6.8244456286339 6.68466282096958 7.13035358929304 7.04596141356331 6.70645881967115 7.01590364593367 6.84923694411555 6.43672321193644 6.6976649694455 6.71919728991856 6.42410789494109 6.56661656923732 6.04845726154284 6.73529401175051 6.34693935641953 6.35222627698458 6.97179014508968 0.208441776650061 0.204122630555879 0.215074814907038 0.19999537062436 0.210763753092078 0.203936649454561 0.201420930904974 0.201559153666299 0.207171920853827 0.207676845680183 0.198405401888413 0.200933216343611 0.196173512437067 0.213455197915906 0.200884562388426 0.204461670016083 0.218386351856977 0.207504481518929 0.213373239971467 1 1 - 3148050 3148681 3148329.091 3147669 3154238 - gene protein_coding_gene FALSE TRUE AT1G09730.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G33620.1); similar to hypothetical protein DDBDRAFT_0191980 [Dictyostelium discoideum AX4] (GB:XP_629102.1); similar to Os05g0207900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054903.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.163599862953488 -1.74988547735577 0.108244695215918 1 0.74304815136162 13.5712686798484 -0.163599862953488 0.0769126796906588
AT1G34590_at 1.47808568997475 1.55580245848016 1.37149386204539 1.72588073444779 1.41793562118544 1.76447162583655 1.40083150812479 1.41823243703662 2.1780743603131 2.29598373947606 1.66236828924360 1.46152575225033 2.01285672988439 1.97493690201144 1.77370132441736 1.95985924124645 2.13626280479104 1.84000686753476 2.41881914401779 0.177005556522115 0.173371641610432 0.169791693075648 0.168469010257864 0.169097866182516 0.172840620369899 0.172115892001174 0.175288434643903 0.172505408420680 0.170767361648773 0.168954747751019 0.173452382420489 0.173960478160735 0.170159501121060 0.174127100926206 0.172202738392476 0.172480695148256 0.178122830060744 0.170222480690246 1 0|1 /|+ 12667323 12667766 12667573.6 12665145 12667796 + gene protein_coding_gene FALSE TRUE AT1G34590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G06603.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60930.1); similar to hypothetical protein 27.t00126 [Brassica oleracea] (GB:ABD65062.1) -0.169114285769259 -1.74981684020797 0.108256964566677 1 0.742955117444369 3.59174948557047 -0.169114285769259 0.0868761897741252
AT1G20220_at 6.95485462618261 7.04693523622919 6.88117012525467 6.67281897738256 6.87931004857062 6.7253869730868 7.3982095973323 7.24302781190185 6.80693585120609 6.90206289216386 6.97520497299136 7.2524812316783 6.89261821956836 6.87688822850711 7.39726409534676 6.6906448047241 6.86326244700042 6.60155496891445 6.92794547870622 0.182477521409424 0.194803898140568 0.192425682913246 0.189137183218963 0.190485919398297 0.199503554446919 0.194368926917918 0.195163479487462 0.189879644458905 0.187199253233145 0.183629573768370 0.188958108612140 0.185395396323645 0.196117050629235 0.191529375304847 0.183166411997725 0.182970913562604 0.185490379298039 0.192504879689965 1 0|1 /|- 7005088 7006144 7005480.889 7004870 7007642 - gene protein_coding_gene FALSE TRUE AT1G20220.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G76010.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71254.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775); contains InterPro domain Alba, DNA binding; (InterPro:IPR011574) -0.153163411552593 -1.74963426860939 0.108289606577811 1 0.742707660834161 13.8865748137176 -0.153163411552593 0.0546323293498336
AT1G60950_at 13.3445691439582 13.5397239788280 13.3201037821856 13.3177232461344 12.9762561922367 12.7887656961372 13.9243294591925 13.9819730453148 13.7472890575053 13.9325379792877 14.3775378245136 14.4370398758396 13.8775320294900 13.9461668305338 14.2907647252866 13.7631479087259 13.6508694245791 14.3107453359896 13.6780534237261 0.0664668718267944 0.0647248233246898 0.0656930974473047 0.0655850111126314 0.0656577734053776 0.0650296118973994 0.0655188620144565 0.0647248233246898 0.0680860605640788 0.0662657211221091 0.0663482337704658 0.0647649467582632 0.0647248233246898 0.0692304063211406 0.0659921689516571 0.0647248233246898 0.0682254546416159 0.0661659177326938 0.0647248233246898 1 1 + 22448254 22448595 22448443.364 22448185 22448826 + gene protein_coding_gene FALSE TRUE AT1G60950.1 FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to chloroplast ferredoxin I [Nicotiana tabacum] (GB:AAS58496.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041); contains InterPro domain 2Fe-2S ferredoxin subdomain; (InterPro:IPR006057) -0.150585668393247 -1.74945628302627 0.108321437208969 1 0.742466433034256 27.3330233919365 -0.150585668393247 0.0478853686347882
AT3G50280_at 2.51729652998720 2.92114503402015 3.54041564704168 4.45639223768736 1.27599573855049 1.37492390265372 1.28123581057443 1.63448185903730 1.70088740232309 1.47273228913799 0.930976478510348 1.50849002493118 1.25189917983243 1.57255364143103 1.62989974532312 1.64628742066289 1.76085614838669 1.52383674400701 1.53106414896769 0.251707973179957 0.261816276055358 0.260657835558667 0.274953595683241 0.255774593117137 0.249564616741653 0.249564616741653 0.253228491968006 0.256300119470463 0.261081026920777 0.255095509080874 0.257326691048278 0.258596806293064 0.249564616741653 0.249564616741653 0.249564616741653 0.253831774679223 0.253882034716706 0.250484695169967 3 3 + 18649590 18650127 18649824.364 18648836 18650167 + gene protein_coding_gene FALSE TRUE AT3G50280.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50300.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.24163202457727 1.74930847452327 0.108347877444281 1 0.742266114617038 3.89839977979163 0.24163202457727 0.184502267051635
AT1G80010_at 5.33550081044397 5.72592090509761 5.9119714439926 6.20644432005585 6.13194381989829 5.86649228890145 5.37584150854759 5.5945295246572 5.51348406014301 5.22066215599405 5.2000939860576 5.03958585674804 5.35757460398454 5.16914694943204 5.00063582395096 5.04339719620112 4.94495506881276 5.11726844767405 5.08133736780924 0.193311591563831 0.191841776146697 0.192484921795636 0.198516127418793 0.1903984896241 0.199105578094999 0.195644991767591 0.191136621171998 0.205083122451983 0.194646706188114 0.187980805468737 0.187263978483896 0.19941180879397 0.199780358909110 0.196864691979771 0.187263978483896 0.205085183719586 0.190583761039678 0.191664271938642 1 1 + 30104147 30104669 30104374.909 30102649 30104739 + gene protein_coding_gene FALSE TRUE AT1G80010.1 FRS8 (FAR1-related sequence 8); zinc ion binding similar to FRS6 (FAR1-related sequence 6), zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G52520.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE93744.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.179259580658827 1.74930292936701 0.108348869484618 1 0.74225859968025 10.9590356291609 0.179259580658827 0.103461666620090
AT3G46820_at 7.60293700513366 7.56109539813133 7.05727871157047 7.3204957087505 8.54735350975837 7.64184926987096 7.66134299064768 7.47812241076711 7.01522595378132 6.53427095565058 7.09327486025324 7.43761390350635 7.22771242595159 7.34419837389343 7.15935338832441 7.28616631131764 6.70466396255246 6.61069727974351 6.61411672638534 0.191889148901158 0.194606637034600 0.200107404330837 0.202402654718152 0.197361240740945 0.20324262004202 0.189809329689243 0.189183732743111 0.203758786129877 0.195738648163079 0.193928511649509 0.191293964798989 0.189183732743111 0.196772971362128 0.189400415923535 0.189183732743111 0.193573513586107 0.198056728264584 0.190154403970083 3 3 - 17253441 17253962 17253750.273 17252768 17255262 - gene protein_coding_gene FALSE TRUE AT3G46820.1 TOPP5 (Type one serine/threonine protein phosphatase 5); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 5 (EC 3.1.3.16) (TOPP5) [Arabidopsis Thaliana] (GB:P48485); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to serine/threonine protein phosphatase 1; PP1 [Malus x domestica] (GB:AAD56010.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.226312683369023 1.74893216707548 0.108415218261441 1 0.741756161359126 14.5233916798114 0.226312683369023 0.166397401727268
AT3G53740_at 9.3613070786914 9.61946685352177 9.11834730497703 9.23008861088541 9.62614150708392 9.2288716330081 9.56430732427195 9.82717411249798 9.56384576771965 9.65511525288294 9.6393796502062 9.88560703957085 9.58049816016353 9.59524839251064 9.77343565390908 9.32194035523753 9.02044465132332 9.60025092747176 9.60668658085343 0.12075960661115 0.117397071278705 0.126678449035464 0.122295676325429 0.125193320947027 0.123005924975344 0.124129166059654 0.117946143580113 0.121384152808402 0.118858148274584 0.121137435984582 0.126119535901067 0.120489461576201 0.125667597835812 0.122124941382316 0.122856269495842 0.125546453994899 0.120901065180933 0.123027572640222 3 3|0 -|/ 19924906 19925737 19925326.5 19924685 19925994 - gene protein_coding_gene FALSE TRUE AT3G53740.1|AT3G53740.2|AT3G53740.3|AT3G53740.4 60S ribosomal protein L36 (RPL36B)|structural constituent of ribosome Identical to 60S ribosomal protein L36-2 (RPL36B) [Arabidopsis Thaliana] (GB:Q9M352;GB:Q8L5U3); similar to 60S ribosomal protein L36 (RPL36A) [Arabidopsis thaliana] (TAIR:AT2G37600.2); similar to ribosomal protein L36 [Triticum aestivum] (GB:AAW50980.1); contains InterPro domain Ribosomal protein L36E; (InterPro:IPR000509) -0.174325087471692 -1.74890099738166 0.108420797822041 1 0.741713924294674 19.0272879552594 -0.174325087471692 0.095737695505784
AT1G30200_at 7.80099810349011 7.79778440046443 7.9036401467547 7.70239387335143 8.26738098927136 7.82755298502983 7.74342408629823 8.05125477737647 8.00322967896933 7.9169798405087 8.4790504394676 8.10193621088907 8.30259327081284 8.43842802865521 7.5898149358924 8.3538649926035 8.04672750750925 8.07787020480512 7.77299878631156 0.138590200465311 0.135080498195747 0.139741041300112 0.142554874262155 0.141186399007832 0.142233336455555 0.136555483482908 0.136998279999735 0.151228328259555 0.133767759171125 0.146345627183922 0.138730521760981 0.136824432078164 0.151027193696701 0.145079388584340 0.141465199927644 0.147209682516382 0.146011091900189 0.142011297454400 1 1 + 10625734 10626199 10626007.909 10625013 10627089 + gene protein_coding_gene FALSE TRUE AT1G30200.1|AT1G30200.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G46170.1); similar to P0432B10.4 [Oryza sativa (japonica cultivar-group)] (GB:BAB90386.1); similar to Os05g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056009.1); similar to Os01g0770400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044377.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.176463126797012 1.74853141068153 0.108486975803481 1 0.741213138981369 15.9225645706342 0.176463126797012 0.0992191673679166
AT1G72850_at 0.65694508293016 0.732944884796598 0.93930254992721 1.29549863844190 1.32951066158113 0.898507330432937 1.45132187626203 0.726898603850779 0.992889865457914 0.84419913633834 1.31004682802569 1.01733542300186 1.00635381810205 1.16824044797653 0.916017441304831 0.883887281493424 0.813439982317577 1.07190118547042 0.583574716074745 0.230224339322472 0.230521419458426 0.235852771848681 0.228730373442658 0.224611186159095 0.224092432291573 0.234164745384232 0.235883103536456 0.232292089199585 0.225796342637763 0.224425445487461 0.227039679855449 0.239985686000707 0.226301949741436 0.232545477041868 0.228926335026426 0.248363941938142 0.237501399097956 0.231535296412859 1 1 + 27418420 27418964 27418735.545 27417632 27418996 + gene protein_coding_gene FALSE TRUE AT1G72850.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT4G09420.1); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.220096039070226 1.74827913828156 0.108532168492397 1 0.740871344754782 1.91901155698712 0.220096039070226 0.158909471926783
AT2G29630_at 11.8152188798075 11.7369299560759 12.0007102928045 11.8224540901901 11.769841289653 11.8745698370985 11.3930326091607 11.3818794449169 10.1443824399435 11.0506637340508 10.1597146949759 9.9263495522169 10.8410998580910 10.565439203919 10.1316569911050 10.5797760397774 11.5094033182907 10.5856417496129 10.3882912258176 0.0947447302157363 0.090150079721315 0.092164158291619 0.0894859167664246 0.092282335114911 0.0905087093602876 0.0932926408054457 0.0933865510548507 0.100232339195483 0.0922501031013899 0.0886741055280758 0.0882534324603752 0.0920450162112994 0.0930398098222173 0.0927028565992895 0.0882534324603752 0.0948426324558806 0.0921323075270111 0.0940314487905569 2 2 + 12676059 12676427 12676249 12674063 12677388 + gene protein_coding_gene FALSE TRUE AT2G29630.1|AT2G29630.2 Encodes ThiC involved in thiamine biosynthesis. Translation of ThiC is regulated by a riboswitch in the 3' of untranslated region of the messenger RNA.|thiamine biosynthesis family protein / thiC family protein similar to putative thiamin biosynthesis protein [Oryza sativa] (GB:AAK26130.1); similar to thiamine biosynthesis protein ThiC [Bacillus halodurans C-125] (GB:NP_242799.1); similar to putative thiamine biosythesis protein ThiC [Poa secunda] (GB:AAG49550.1); contains InterPro domain Thiamine biosynthesis protein ThiC; (InterPro:IPR002817) 0.147367348837122 1.74825069265641 0.108537265376654 1 0.74083280647864 22.256911704598 0.147367348837122 0.0383060675449563
AT1G63300_at 2.78025578283625 2.70754304211783 2.36166024174485 2.30694653488201 2.11751345201484 2.39352352744542 2.83301889431267 2.67392001306195 3.13126978354085 2.76261407126495 3.0054153026898 3.12691415141252 3.00144297606886 2.79646180044744 3.49284058682483 2.96068738123804 2.85300781206726 3.19561492380137 2.83176304674951 0.178496844474422 0.170102498875922 0.169532922442596 0.176225671115270 0.173881948005742 0.173156434463113 0.173902131830878 0.18296127173348 0.178670375590271 0.172246997595405 0.170223928860143 0.169724574615480 0.167773348039324 0.174900978928545 0.172151508456896 0.170157692715244 0.172081819067558 0.176917775321473 0.174211783076549 1 1|0 +|/ 23489067 23489673 23489353.9 23485858 23489885 + gene protein_coding_gene FALSE TRUE AT1G63300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41140.1); similar to putative myosin [Oryza sativa (japonica cultivar-group)] (GB:AAO72668.1); contains domain MYOSIN HEAVY CHAIN-RELATED (PTHR23160) -0.154137172213369 -1.74810629460137 0.108563141938222 1 0.740637180310632 5.50309622805392 -0.154137172213369 0.0573369427967501
AT1G02750_at 6.61494911584129 7.14344530589745 7.32886743732935 7.38390675773731 7.54746264957992 7.16747486714229 6.97700126202519 6.92874155301902 5.24850159508638 5.20223400235795 5.3610001700787 5.22986982343647 5.68487101209105 5.57915794232030 4.71996301591852 5.44938815237201 5.826351746347 4.50443700605685 5.64082128932376 0.250176960525594 0.249136381245429 0.238269682153073 0.24958248270618 0.244707063819485 0.245727281458576 0.241586440423466 0.246148451599217 0.262882784186593 0.246345939970631 0.249596878510708 0.238961411002158 0.241616410166687 0.247492703085219 0.244538626963164 0.235347464504962 0.250621161946491 0.241107069087970 0.235347464504962 1 1|0 +|/ 602682 604085 603605.1 602497 604292 + gene protein_coding_gene FALSE TRUE AT1G02750.1 similar to drought-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G02200.1); similar to fiber protein Fb2 [Gossypium barbadense] (GB:AAN77145.1); contains InterPro domain Drought induced 19; (InterPro:IPR008598) 0.185710590869867 1.74781973964888 0.108614509931489 1 0.740248989188655 12.4655971956550 0.185710590869867 0.113355066881908
AT1G07550_at 1.60884689886827 1.32106371361904 1.67131188660687 1.61535034875939 1.04889125384937 1.46124577246416 1.36992654224043 1.76144367324300 2.07564067826568 1.37528061081386 1.58251314280192 1.23548328001338 1.99573507951830 1.42789850152200 1.38659874910832 1.27716654848730 1.10574264710457 1.55807823870606 1.79243412454403 0.180862565020726 0.177435768758802 0.191419087313264 0.179539418111629 0.186055050167775 0.182965765718430 0.189001881281241 0.181020739497652 0.190038909696862 0.177435768758802 0.182090965107850 0.186399721588563 0.186436126484491 0.177435768758802 0.178356178021699 0.179030718770687 0.183071841100736 0.183999350501323 0.18856207469554 1 1|0 -|/ 2322743 2323279 2322990.7 2322650 2326558 - gene protein_coding_gene FALSE TRUE AT1G07550.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G14510.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G14440.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07560.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.183876753019765 -1.74749980457295 0.108671887584622 1 0.739815617811635 3.07922859184744 -0.183876753019765 0.110710734617798
AT2G38660_at 5.44457466899709 5.13626865797423 4.82997100169358 4.3939188583647 4.85931788929326 4.93716634509605 4.01302607654537 3.97174382478033 4.0972750935562 4.37366225940960 3.56012138792132 3.57313654988674 3.78571674106752 3.60450805258094 3.92563143192723 4.04030056355282 4.25028623169679 3.42428761830246 4.21906709962389 0.23109250237199 0.228507182465184 0.227326276970480 0.228664467936681 0.242561622485244 0.233301020562293 0.233421886834281 0.231888324917164 0.242355710033653 0.227326276970480 0.234413545529289 0.233115940354783 0.230569661008615 0.232214357687367 0.235188418570542 0.231112950387608 0.233970035541295 0.227326276970480 0.231250179263024 2 2|0 +|/ 16174027 16175244 16174823.9 16173030 16175463 + gene protein_coding_gene FALSE TRUE AT2G38660.1|AT2G38660.2 tetrahydrofolate dehydrogenase/cyclohydrolase, putative|catalytic similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to Os09g0327300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062889.1); similar to putative tetrahydrofolate synthase [Trifolium pratense] (GB:BAE71273.1); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672) -0.172906347770971 -1.74739250220588 0.108691137483573 1 0.739670279547996 8.69849844349984 -0.172906347770971 0.0936669737484262
AT2G29530_at 7.89261030708156 7.76656916543133 7.55041277318421 7.42752839990321 7.52857974180263 6.72887871098921 7.90056517958473 7.87186547271647 6.88380856527472 7.12433428498176 7.03475659961102 7.63737980695763 6.93801312017988 6.9683321171024 7.42203736046083 7.02486760164176 6.96164049332144 6.88356974597546 6.90957393409886 0.156154844974925 0.158870818151280 0.155921882567428 0.163175733335381 0.163301630611158 0.161769915895071 0.159433536338707 0.163162391651120 0.164227654673013 0.159644623200878 0.16215132675595 0.160712005801620 0.162303194530453 0.154712393727460 0.157100012426593 0.163663382094485 0.173237271834154 0.161709654437648 0.162291316715076 2 2|0 -|/ 12648110 12649282 12648538.444 12647877 12649462 - gene protein_coding_gene FALSE TRUE AT2G29530.1|AT2G29530.2 TIM10 (Arabidopsis thaliana translocase inner membrane subunit 10); protein translocase|TIM10 (Arabidopsis thaliana translocase inner membrane subunit 10) Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Identical to Mitochondrial import inner membrane translocase subunit Tim10 (TIM10) [Arabidopsis Thaliana] (GB:Q9ZW33); similar to small zinc finger-like protein [Pinus taeda] (GB:AAD39957.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) -0.206400140264592 -1.74709244905938 0.108744982948090 1 0.739263890095394 14.6240746523907 -0.206400140264592 0.141792119973997
AT1G74780_at 3.69111198679038 3.92443181162299 3.66997901179806 3.30025693471822 4.02591823614100 3.88228652339520 4.35225012176207 4.3655781811025 3.42493191879007 3.40825496583112 4.17310079194197 4.45423453783822 4.09354415268809 4.15585199003947 4.63240556419191 3.84530563353645 4.59515599445204 3.68319932567568 3.69906434380498 0.236119202204886 0.228300270767094 0.233986294729822 0.224428534593871 0.227811297721316 0.229033544470776 0.224228685782966 0.226591128881818 0.230261070821079 0.224228685782966 0.229874658493025 0.224726786840198 0.240286984530596 0.236232524284598 0.227225601854471 0.225142955860356 0.240134211463016 0.232884625786842 0.230276367866034 1 1 + 28100974 28101499 28101308.364 28099476 28101846 + gene protein_coding_gene FALSE TRUE AT1G74780.1 nodulin family protein similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G34355.1); similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT1G18940.1); similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G34350.1); similar to Unknown similar to A.thaliana Hypothetical protein yhjx (F25A4.25) [Triticum aestivum] (GB:CAH10046.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.164808245256862 1.74702559843123 0.108756982778999 1 0.73917335313063 7.75890168005174 0.164808245256862 0.0796691237249781
AT4G10925_at 5.27981687793946 5.11802854720605 5.31007471076521 5.17080601178968 5.95475918093171 6.12814809381763 4.97030915640749 4.81044198949581 4.48868779229229 4.53796711397374 4.37717790872975 3.9316889502437 4.38759304653285 5.08319001831725 4.00751776400566 4.46278009005908 5.45976398464024 4.03570310074031 5.24817298859028 0.222617671845697 0.232505615080613 0.229594850623556 0.223269277558813 0.224776430522372 0.244371232529865 0.228905812192952 0.229930188150236 0.241287010202816 0.227416372000403 0.234598496482112 0.224200801588573 0.223978034708702 0.234814556487698 0.228317146774921 0.226778797254080 0.234671054280190 0.225250056124166 0.228687300997778 4 4 - 6703006 6704136 6703567.727 6702739 6704618 - gene protein_coding_gene FALSE TRUE AT4G10925.1|AT4G10925.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G23960.1); similar to Os01g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043300.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19863.1); similar to Os01g0753200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044272.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.153099374760179 1.74698421921580 0.108764411035593 1 0.739117313447973 9.95602448247448 0.153099374760179 0.0550500079805669
AT2G38060_at 1.35419470286991 1.73245079341795 1.65596514708863 2.19239903331509 1.71526312504369 1.6548570209678 1.79527870798493 1.48754937774333 1.36936407264155 1.75185987052631 1.7786669765706 1.70338155248118 1.69314411841005 1.95311598926919 2.00785660547098 1.52141899734002 1.69198097063701 2.10534918926233 1.76931084355703 0.258869446058854 0.247129114216765 0.256122183145669 0.251765136789973 0.252415757131357 0.253248913588333 0.255799291564410 0.262802250024014 0.258061336945129 0.251274741542737 0.252633237307798 0.251039497946352 0.251423108630264 0.255249050070041 0.255118040466616 0.247129114216765 0.247889356245708 0.248530544659000 0.249526643261921 2 2 - 15929817 15930532 15930153.2 15929805 15932701 - gene protein_coding_gene FALSE TRUE AT2G38060.1 transporter-related similar to carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G46980.3); similar to Os05g0451100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055705.1); similar to putative glutamate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAB84388.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.194469361894159 1.74695285011726 0.108770042615056 1 0.73907483088277 3.41701601963981 0.194469361894159 0.125888819767856
AT4G10170_at 7.51756825843991 8.0284384951166 8.11421042889425 7.88086970551584 8.8819771141658 8.10724813398712 8.03084439906572 7.96972767336819 7.75792304498287 7.53027235412943 7.76697341250659 7.98013202581963 7.99834634193589 8.05894431733645 7.47455196108357 8.07172750057616 7.9531543916628 7.7618101328656 8.08593822316444 0.154535888594335 0.151894049818126 0.158035523977333 0.163384648246318 0.159161388571477 0.163401665146284 0.166304825825993 0.15464453161742 0.166034269820621 0.156545350019597 0.155190648874279 0.153964990838610 0.156479246409277 0.159228667866091 0.160468854250563 0.156038354957665 0.159725750317506 0.165446987105361 0.159692477913666 4 4 + 6344887 6345322 6345144.182 6344327 6345533 + gene protein_coding_gene FALSE TRUE AT4G10170.1|AT4G10170.2 synaptobrevin-related family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33475.1); similar to Os08g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060818.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB92457.1); similar to Os01g0876500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044970.1); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.225629387762123 1.74661991063188 0.108829830243889 1 0.738623961907386 15.9036519683520 0.225629387762123 0.165931949814367
AT3G05230_at 6.23480603839951 6.17543235170026 6.28696008268952 6.50079885942052 5.6307631640093 4.96249335844202 4.90720304062586 5.22937485649158 5.69636349663724 4.57472549512699 5.74363919880011 5.58848968479916 4.32161715028609 5.38409003597308 5.22198509460708 4.76986024288361 4.57054079364982 4.8024236183734 4.30307799620353 0.222905050873277 0.217845019371738 0.240837383074173 0.217562695301248 0.221360879934751 0.239777980132188 0.216996270178397 0.220231480331857 0.226171051534198 0.219892473682526 0.219422370165172 0.218588388366208 0.22816524541948 0.231355613291397 0.226104742658978 0.216785277232204 0.22882742907358 0.218740312679388 0.232720066317052 3 3|0 +|/ 1492360 1493414 1492913.333 1492148 1493625 + gene protein_coding_gene FALSE TRUE AT3G05230.1|AT3G05230.2 signal peptidase subunit family protein|signal peptidase Identical to Probable signal peptidase complex subunit 3 (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) [Arabidopsis Thaliana] (GB:Q9MA96;GB:O65203); similar to signal peptidase subunit family protein [Arabidopsis thaliana] (TAIR:AT5G27430.1); similar to Signal peptidase 22 kDa subunit [Medicago truncatula] (GB:ABD32389.1); contains InterPro domain Signal peptidase 22 kDa subunit; (InterPro:IPR007653) 0.200412429550832 1.74651692120005 0.108848330582924 1 0.738484501988157 10.6951721640110 0.200412429550832 0.134006392633469
AT1G71760_at 1.85244200649563 1.74362643641872 1.90455571596649 1.971723312707 1.36783490823128 1.58553337809002 1.19542236884267 1.30018096290422 1.95564869004983 1.55806792132392 1.50084342538893 2.10249476110226 1.43620284060068 1.94560578088985 1.68692437191074 1.78291007115973 1.96067974520541 2.07301739773246 1.57226395343838 0.179545963142553 0.169727446566458 0.17481951922281 0.180871851776274 0.173990518310263 0.176706894622066 0.174654395980258 0.173071797852891 0.168991395305109 0.171294221862443 0.177616220208618 0.172859506786028 0.183040690966636 0.174342626012456 0.174826931088167 0.172703940433134 0.175856277674281 0.174741288711037 0.174599534177892 1 1 + 26993467 26994132 26993832.636 26993020 26994279 + gene protein_coding_gene FALSE TRUE AT1G71760.1|AT1G71760.2 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87382.1)|similar to Os01g0716300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044069.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87382.1) 0.150125914697385 1.74651360282587 0.108848926720866 1 0.738480008586928 3.36837071330007 0.150125914697385 0.0473042007043907
AT3G46360_at 2.23433884675508 1.49951260121011 2.48715739794618 2.00220365152412 1.96834214663085 2.12734435762317 2.09741186877296 1.85756936860043 2.11523602008571 1.75058877152057 2.08949605079254 2.12403588207952 2.00300636405069 1.79161525223970 2.29836501961760 1.87810037163228 2.44168602693664 2.03400904857776 1.72798003679196 0.204009061160202 0.199567215345728 0.204127412990289 0.20496812348166 0.207493467313672 0.201375175543630 0.202525070261294 0.198801116144842 0.209742961531294 0.204324634656917 0.205695411710739 0.203595787146295 0.205259706367686 0.206812645830711 0.203629323793270 0.198801116144842 0.205566916526446 0.205363487981207 0.211665365574429 3 0|3 /|- 17053204 17054083 17053594.125 17053200 17054485 - gene protein_coding_gene FALSE TRUE AT3G46360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44755.1) 0.220995679810596 1.74650016652086 0.108851340550872 1 0.738461814569358 4.00780546061132 0.220995679810596 0.160293452945404
AT3G18640_at 5.2865024551557 6.02266159610714 4.92558979468393 5.10907852369534 5.47198207742969 4.96494250912304 5.04453434137419 5.1418608239334 4.0224336618853 4.52639335296912 5.01233017857672 4.6863394828374 5.18707841662538 4.50242693029408 5.1471456088306 5.00285572678828 5.17135147914126 4.28063812474118 3.98583060598786 0.210299698362412 0.215817719613361 0.208654994023107 0.213768549919056 0.210671728517797 0.240055721843708 0.210088132309687 0.221497482601487 0.207865050718754 0.216058733488897 0.205766851388467 0.209877730529086 0.230998126147998 0.210811609035413 0.203070788903813 0.207019800956109 0.231299996697541 0.207053693865456 0.220076817734879 3 3|0 -|/ 6414118 6414284 6414202.667 6413307 6416556 - gene protein_coding_gene FALSE TRUE AT3G18640.1 zinc finger protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26850.2); similar to hypothetical protein S250_18C08.12 [Sorghum bicolor] (GB:AAS82598.1); similar to Os03g0214900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049373.1); similar to Os08g0135800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060944.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.219779979311163 1.74640231426452 0.108868921149820 1 0.738329315638748 9.7718889904012 0.219779979311163 0.158811008363553
AT1G21190_at 6.14577930228803 6.19706102122798 6.07355315756144 6.43673503557575 6.91244457717463 6.19858009895012 5.79921366531508 6.00745703739732 5.47688287489308 5.43714959962122 5.4068845702905 5.34907525601624 5.46849900845887 5.65410024490606 5.47724309579313 5.83012326578543 5.74349595219814 5.43552343590741 5.58091878020402 0.213497486141333 0.223107972568784 0.213008371298001 0.210950131870045 0.212541185300162 0.215998933877635 0.207916530663138 0.223041881939601 0.216600470283073 0.207916530663138 0.215253632080180 0.210587999299679 0.207916530663138 0.215309128755634 0.209692780159538 0.207916530663138 0.218249778675444 0.214495144894213 0.211696259325832 1 1|0 -|/ 7419989 7420820 7420528.556 7419667 7420892 - gene protein_coding_gene FALSE TRUE AT1G21190.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G76860.1); similar to LSM Sm-like protein family member [Bombyx mori] (GB:NP_001040418.1); similar to Os01g0866700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044909.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.207625739760875 1.74636713764239 0.108875241774181 1 0.738281684932338 11.7433205812241 0.207625739760875 0.143489209949096
AT1G22270_at 6.89125279763166 6.84944606195463 6.5128401835265 6.57462471893685 6.5292737381691 6.89923229800709 6.94788591392951 6.95643430199385 6.19962946244887 6.12216284660546 6.2233148169308 6.3125432334674 5.90573613988633 5.96281031833068 6.09880200480674 6.21027887956034 5.99570275752721 6.11108300847444 6.08405605246796 0.186367348410695 0.192949710412080 0.183864399015470 0.184554837566626 0.192648105600363 0.184311755501354 0.192396014466165 0.189771382484890 0.188759935116622 0.188338381364086 0.184005406176596 0.186336524893735 0.193410947138236 0.18568544303524 0.186571013462686 0.178217199787230 0.184096926228382 0.195457970221492 0.197577324790389 1 1 + 7865551 7865875 7865708.182 7865470 7866128 + gene protein_coding_gene FALSE TRUE AT1G22270.1 Identical to TRM112-like protein At1g22270 [Arabidopsis Thaliana] (GB:Q8LFJ5;GB:Q9LME3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78190.1); similar to Protein of unknown function DUF343 [Medicago truncatula] (GB:ABE93747.1); contains InterPro domain Protein of unknown function DUF343; (InterPro:IPR005651) -0.157505463259313 -1.74629426647584 0.108888336503151 1 0.738183015735523 12.8890320927922 -0.157505463259313 0.065328431935358
AT1G80880_at 1.80676233468934 1.75696428172106 1.95580953761830 1.86041824877602 1.93382130249513 1.86345460448902 1.70788855774600 1.75391607548331 1.81784566946597 2.12174186528102 2.63691963503371 1.63766019762054 2.02067657772494 1.72570632952222 1.87512714236573 1.85828198968670 2.12053122355565 2.13503603731233 1.64336263969158 0.205542092011344 0.211689171882730 0.214574502459969 0.207572762428808 0.210636111772336 0.205542092011344 0.20944758069645 0.206432960822477 0.227042606559459 0.223810434186106 0.209578761580096 0.205542092011344 0.205542092011344 0.218027608085267 0.206820762806947 0.209577490220324 0.216845884330505 0.221078348474542 0.218997739092705 1 1 - 30400101 30400603 30400383.909 30400086 30401813 - gene protein_coding_gene FALSE TRUE AT1G80880.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15010.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82704.1); similar to Os08g0272200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061426.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.143626055528945 1.74539505711646 0.109050038729117 1 0.736965643137259 3.7609922594184 0.143626055528945 0.0236327979526554
AT2G42320_at 8.87935359672464 8.88719806387803 8.41590379708105 8.58611374456576 9.29258937930358 9.14474611394692 9.54844339202224 9.3813765269914 9.60285492809447 9.62630318126526 9.98217856797167 9.62171642388494 9.44271090579106 9.74540430493028 9.6929394835120 9.31986918388443 9.11665387001473 9.68899910515892 9.45984537076294 0.0986059113592002 0.0969761329410475 0.102494812778193 0.106786582567318 0.0969761329410475 0.102906213768073 0.097823392085581 0.0987022192920683 0.103492872807018 0.0998127619610275 0.0969761329410475 0.0969761329410475 0.104553103304397 0.0985023230163142 0.100273505775417 0.0978631947308597 0.103992343373731 0.100941415993383 0.101087263694108 2 2|0 +|/ 17636980 17637707 17637395 17634420 17637875 + gene protein_coding_gene FALSE TRUE AT2G42320.1|AT2G42320.2 nucleolar protein gar2-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57780.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94664.1); similar to hypothetical protein [Nicotiana tabacum] (GB:BAC53933.1) -0.150473407788569 -1.74525597974462 0.109075067951028 1 0.736777385904337 18.5866206471564 -0.150473407788569 0.0485793540971772
AT2G42930_at 0.610700084488026 0.605945136636178 0.836549753193825 0.837607797216847 0.985702908909846 0.590585128981436 1.15781162306684 0.94523153266301 1.12427004149147 0.968167550982385 0.838483368935695 0.146984880371418 1.33963922620118 0.748103406751357 1.12545239073866 0.757263434656238 0.778672973427843 0.99374019556713 1.35966397509660 0.199043700027995 0.202113141669428 0.201931247810760 0.202602039245125 0.199043700027995 0.199193295193257 0.200698954763098 0.203287391938275 0.200408386389670 0.203673716008167 0.206187216947589 0.200500471113312 0.208157117488042 0.203552800828961 0.20271224064495 0.199583632334977 0.199043700027995 0.211315184689681 0.203511457851968 2 2 - 17867946 17868306 17868122.273 17867945 17868349 - gene protein_coding_gene FALSE TRUE AT2G42930.1 glycosyl hydrolase family protein 17 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30933.1); similar to Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold [Medicago truncatula] (GB:ABE78694.1); similar to Os05g0581900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056434.1); similar to Os01g0631500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043647.1); contains InterPro domain X8; (InterPro:IPR012946) -0.163484367540160 -1.74447623630706 0.109215491409257 1 0.735722058696368 1.81713824919684 -0.163484367540160 0.0776497035995843
AT1G05840_at 7.76045896700754 8.39787506240155 8.11882182220355 7.8392662185688 8.91164002939915 8.16079411848833 8.30373442395765 8.12664421522461 8.08197719873618 7.71300150261319 7.33852247744098 7.2541667184532 7.39287787183587 7.7003435992471 6.83199205195654 7.56171540165685 7.1276394256283 7.41393362866528 7.9409925260466 0.202799704455966 0.202709093818332 0.207575178773486 0.206085203335112 0.206466017693989 0.200815755569326 0.203855253555440 0.200718872548357 0.220403553613238 0.201125685180734 0.200447056992658 0.203702189858467 0.206833860511247 0.197048416661133 0.209431666904517 0.198069140798683 0.223316683007539 0.204292101258957 0.197048416661133 1 1 - 1762875 1764052 1763493.455 1762733 1766280 - gene protein_coding_gene FALSE TRUE AT1G05840.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G02740.1); similar to Os02g0473200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046837.1); similar to Eukaryotic aspartyl protease [Medicago truncatula] (GB:ABE89788.1); similar to OSJNBa0008A08.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01597.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.236944566127176 -1.74434682137417 0.109238813430444 1 0.735546928672506 15.8222240101526 -0.236944566127176 0.179808803900887
AT2G22630_at 1.08574391507032 0.838114567116964 0.979598655234718 1.08788884600223 0.898580375429433 0.66406038710336 1.13416217781852 1.05210033960068 1.14381976361096 1.23635044000402 1.27074794930009 0.835275409681273 1.11555256868548 0.623516719279854 1.14285678101282 0.95034114010296 0.672054081270047 1.10258936706405 1.09109189334427 0.177163311746431 0.175575659445913 0.179204420326417 0.180031506919561 0.173638392919178 0.179170448884957 0.173221335933190 0.176355460664786 0.173367877184151 0.181167885413508 0.173410357572266 0.180604274423876 0.191153946845294 0.175254889289322 0.182021030878403 0.174965168508351 0.181306312214241 0.185802254597366 0.173221335933190 2 2|0 +|/ 9625548 9628680 9627519.556 9625452 9628961 + gene protein_coding_gene FALSE TRUE AT2G22630.1 AGL17 (AGAMOUS-LIKE 17); transcription factor encodes a root-specific MADS-box protein, expressed in the root. Identical to Agamous-like MADS-box protein AGL17 (AGL17) [Arabidopsis Thaliana] (GB:Q38840;GB:Q9ZQ50); similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to MADS-box protein AGL17 (GB:AAC49084.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.156484398781348 -1.74411626214707 0.109280373919469 1 0.735234942551444 2.02813321677335 -0.156484398781348 0.0635327085298397
AT1G34065_at 2.48895390759915 2.35670807293459 2.55346693853187 2.51489525311590 2.13159467060530 2.25167315570786 2.74689974964883 2.94778238428325 3.08414691247032 2.95301459311455 2.87552358982745 3.08336217304793 2.97528547789741 2.70649244923112 3.35686457405756 2.7667657096472 2.90903311515177 3.43997994331307 3.08755295442888 0.20881566488779 0.200553232588987 0.202156019146854 0.199287855184373 0.196836452369215 0.201565258305954 0.194398555142129 0.19960221149339 0.197781467363248 0.207744368830729 0.202817651826756 0.195647029113112 0.199056790398633 0.196582753593994 0.202431844976270 0.198410693646041 0.20548899431172 0.195446362502706 0.196969876170731 1 0|1 /|- 12399128 12399725 12399433.222 12398696 12400861 - gene protein_coding_gene FALSE TRUE AT1G34065.1 SAMC2 (S-adenosylmethionine carrier 2); binding similar to SAMC1/SAMT1 (S-ADENOSYLMETHIONINE CARRIER 1, SAM TRANSPORTER1), S-adenosylmethionine transporter/ binding [Arabidopsis thaliana] (TAIR:AT4G39460.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_796953.1); similar to Os07g0295000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059405.1); similar to Os05g0361900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055312.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.149793315887892 -1.74390480462559 0.109318503684809 1 0.73494882328428 5.52686419939981 -0.149793315887892 0.0469961830403114
AT4G13550_at 7.7270477374898 8.15954783220901 7.77615339772476 8.10583306811519 8.62897132892022 7.45015028753791 8.89654112516137 8.84221753699202 8.06057057463675 8.25729061771981 8.03027027165761 7.92525678689848 7.81849792611554 8.10862066031638 7.45915450055897 8.62452847888474 7.55276657360739 7.61611840506128 7.76885638399242 0.217094412335396 0.213685383107113 0.228853431286349 0.231544859392701 0.213680130409569 0.241245752378126 0.214888888880922 0.229116428090511 0.234133021767279 0.234662116218725 0.21678349197059 0.215834869800848 0.222879144023777 0.232019454240805 0.236665331309776 0.213680130409569 0.237788707008044 0.243412725063123 0.223919017505046 4 4 - 7871614 7872964 7872504.4 7871053 7876873 - gene protein_coding_gene FALSE TRUE AT4G13550.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT5G18640.1); similar to Os04g0509100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053276.1); similar to Predicted lipase (ISS) [Ostreococcus tauri] (GB:CAL50026.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.276532847891986 -1.74362121098731 0.109369659788875 1 0.734565126478359 16.1587115688541 -0.276532847891986 0.224858890031375
AT3G02050_at 8.62665951080958 8.6311589332471 8.7147319193068 8.74802763005193 8.82537776535224 8.59466595336396 9.1252922452855 9.18684565336351 8.13639446103575 8.76296022672312 8.41899082496353 8.05566906764845 8.48893446468138 8.72982221922815 8.03642332288598 8.66292333957565 8.10148499478575 8.38628641926497 8.55343161005024 0.121606063689307 0.121576013630488 0.125788036967653 0.12530319979384 0.121931490815961 0.129645232108595 0.125034481179764 0.123335863125059 0.139445380807226 0.122655969975269 0.123198549162712 0.123225934243854 0.125175349973985 0.127826327594424 0.127649535887281 0.121850473306951 0.129146470130288 0.123550554236451 0.129436937829863 3 3 + 353644 354038 353802.909 350623 354352 + gene protein_coding_gene FALSE TRUE AT3G02050.1 KUP3 (K+ uptake permease 3); potassium ion transporter potassium transporter KUP3p (KUP3) Identical to Potassium transporter 4 (AtPOT4) (AtKUP3) (AtKT4) (POT4) [Arabidopsis Thaliana] (GB:Q9LD18;GB:O22400;GB:Q9SGA3); similar to TRH1 (TINY ROOT HAIR 1), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT4G23640.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to potassium transporter [Phragmites australis] (GB:BAE93236.1); similar to potassium transporter [Phragmites australis] (GB:BAE93235.1); similar to potassium transporter HAK4 [Hordeum vulgare] (GB:ABE99812.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.147991768149078 -1.74334597263924 0.109419329370081 1 0.73419276546378 17.2287594167970 -0.147991768149078 0.0417293652544191
AT2G19900_at 1.94973404863439 1.75686006190972 2.01243181049115 1.62103067608255 1.81740256736517 2.09951666977757 1.71827697941936 1.86070660629364 1.82599898692552 2.25768679853631 2.43230810901445 2.74265710576585 2.22977150044945 2.114214500018 2.41610075039545 2.62322485521573 1.71612909550176 2.37759847565085 2.07661472807692 0.226006565990141 0.220125880994358 0.225710061122842 0.228821716335674 0.224460514512006 0.224634076946529 0.221958728475620 0.22260680540972 0.228007253080011 0.223190297242911 0.219040150109223 0.219617574698673 0.222304527523531 0.219040150109223 0.224985335011240 0.223541288154618 0.244128155816306 0.222460885570368 0.222474895461822 2 2|0 -|/ 8599414 8600148 8599856.556 8598981 8602560 - gene protein_coding_gene FALSE TRUE AT2G19900.1 ATNADP-ME1 (NADP-MALIC ENZYME 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. similar to ATNADP-ME4 (NADP-MALIC ENZYME 4), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT1G79750.1); similar to ATNADP-ME3 (NADP-MALIC ENZYME 3), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G25880.1); similar to ATNADP-ME2 (NADP-MALIC ENZYME 2), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G11670.1); similar to NADP-dependent malic protein [Ricinus communis] (GB:AAF73006.1); similar to NADP dependent malic enzyme [Phaseolus vulgaris] (GB:CAA56354.1); similar to NADP-malic enzyme [Aloe arborescens] (GB:BAA24950.1); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) 0.172134025676678 1.74222305406839 0.109622182437063 1 0.732673924529729 4.04696195425387 0.172134025676678 0.0932361272616662
AT3G05910_at 9.10417440154182 9.2978594862165 8.49355401061482 8.42805282993445 9.477040005176 9.48865982372146 9.51905272671846 9.38367152328025 10.4878248535297 10.1094737810563 10.7659122730320 10.5069134717470 10.2966501423912 10.3812446192112 10.7849965648856 10.0188489157253 9.20592239934617 10.6048815843425 10.1901370992171 0.106255985800087 0.101573914424127 0.108869727978382 0.115062707558271 0.101166191880382 0.10685736504902 0.106349950836399 0.100399343437367 0.106555930243159 0.104002731102474 0.098786670382156 0.0995964352578018 0.0986600429423853 0.107366118113198 0.096513811545445 0.0983584778965076 0.117540092467416 0.100295931489476 0.101938803835762 3 3|0 -|/ 1764519 1765501 1764958.4 1764300 1767581 - gene protein_coding_gene FALSE TRUE AT3G05910.1 pectinacetylesterase, putative similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.148085099338398 -1.74162494602491 0.109730367879010 1 0.731865142931515 19.4405830130352 -0.148085099338398 0.0424839179719398
AT1G73655_at 10.1977254826259 10.0606993664752 9.42201863866254 9.517807188291 9.9959990824846 9.55842977094038 10.3085341972895 10.0348114952234 10.1669312009118 10.1828549739058 10.4338757164245 10.4268939144279 9.88425004761192 10.4551038881528 10.5719742998074 10.2634403284689 9.64455324894834 10.086373922583 9.76679320011225 0.104960657731386 0.103874703977184 0.107591497908521 0.107047437470339 0.101754300411788 0.107012782289558 0.105981634902637 0.108216890864203 0.118739323995107 0.102406877790474 0.103703332828820 0.101101504183811 0.102309461232082 0.103515340503844 0.102674948719328 0.101811227108478 0.107844648639347 0.107832401030350 0.104099028231163 1 1 - 27694186 27695297 27694862.273 27694020 27695475 - gene protein_coding_gene FALSE TRUE AT1G73655.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT1G18170.1); similar to hypothetical protein MtrDRAFT_AC139526g24v1 [Medicago truncatula] (GB:ABE80155.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.172465293074525 -1.74158070916116 0.109738373240319 1 0.7318053301557 20.0168371339723 -0.172465293074525 0.0938879563012832
AT3G44080_at 1.12073105700323 0.659969649237323 0.852043087146495 0.997112135389857 0.810577203629794 1.17023843037939 0.78976030747304 0.744152084273377 1.11679347488017 0.84902736932598 1.23355230134670 0.95847379069354 1.49574791955606 1.14535912547525 1.34908329712597 1.15025829783047 1.00600808556783 1.09049791190159 0.88199276680953 0.209072257946614 0.204485469120205 0.207448611037303 0.207547526983607 0.205668645725473 0.205318545108358 0.208500152111589 0.204485469120205 0.210561879962587 0.219706874842195 0.204513059895569 0.210416397846785 0.207870987063809 0.215395954514505 0.204702714990371 0.205693232824832 0.204485469120205 0.216525350458685 0.216869711423295 3 3|0 -|/ 15846831 15847350 15847143.7 15846619 15848113 - gene protein_coding_gene FALSE TRUE AT3G44080.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G44090.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85786.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.179095413577463 1.74100484948854 0.109842632231509 1 0.731026781540436 1.95701989174610 0.179095413577463 0.104520205065388
AT2G03690_at 7.4813075879122 7.32495195622679 7.14926896306635 7.10540152092034 7.37482841183755 7.5121162233231 7.28051505140845 7.17485919295887 7.44298397868568 7.42497411514216 7.19395384300682 6.68455752859985 7.06316091629057 7.04131235807427 7.45811840561684 7.1214419695718 7.34010440767459 7.31935333250141 7.38572521792169 0.164930899919961 0.163073598637257 0.182356416895447 0.171408701884292 0.167904305419364 0.16710443109053 0.167009251653974 0.171586113822497 0.162294248562297 0.165299905981863 0.165369477474432 0.171149211497082 0.170365654218211 0.169422660278987 0.165620490369240 0.162808441105573 0.180949536073568 0.164853023724805 0.164875838163297 2 2 - 1122204 1122891 1122461.727 1121897 1123168 - gene protein_coding_gene FALSE TRUE AT2G03690.1 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein Ubiquinone biosynthesis protein COQ4 homolog. Identical to Ubiquinone biosynthesis protein COQ4 homolog [Arabidopsis Thaliana] (GB:Q9ZPR0); similar to Os04g0674200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054237.1); similar to H0403D02.13 [Oryza sativa (indica cultivar-group)] (GB:CAH68184.1); contains InterPro domain Coenzyme Q biosynthesis Coq4; (InterPro:IPR007715) -0.147574379711285 -1.74077508614915 0.109884255644649 1 0.730716184659001 14.5857285046651 -0.147574379711285 0.0410918434584643
AT3G50590_at 6.42834398595166 6.52506144255152 6.35127867151451 6.67466736020482 6.95073978656295 6.69728626230969 6.42755717643482 6.6036135748631 5.99571124387841 5.8817623000097 5.79536423056326 6.01583224596666 6.11228425837665 6.04609915267149 5.91948207348914 5.99175032654151 5.92195542425999 6.11818920098999 5.62631555331904 0.131612604772822 0.135213648812277 0.133902314770777 0.141699494039691 0.142481994861407 0.139795943879855 0.134399083010843 0.134472948363904 0.145490132083020 0.140030997001928 0.132362619416889 0.131979711461298 0.130776190673295 0.137586235170831 0.131145510685207 0.130750878604035 0.137854086247863 0.130837745047018 0.133858254069358 3 3|0 +|/ 18784918 18790111 18787805.3 18782000 18790483 + gene protein_coding_gene FALSE TRUE AT3G50590.1 transducin family protein / WD-40 repeat family protein similar to vascular protein 7 [Plantago major] (GB:CAJ38417.1); similar to Os09g0408000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063140.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.16393611178467 1.74076705923975 0.109885710038681 1 0.730705334173964 12.4946765224707 0.16393611178467 0.0791465565987257
AT1G14430_at 1.63850157739594 1.71584092131371 1.47389139210129 1.68906473109624 1.56947289764089 1.63263688993034 1.55889806351042 1.47371810638820 2.06994305858487 1.91612181421839 1.43150714819935 1.37657458130310 1.71367492732046 1.46726538557148 1.75914207062856 1.89124070775877 1.91350812671453 1.98050606475966 1.9628102999217 0.170734174580248 0.167764184281798 0.170407788760482 0.172095993280431 0.167764184281798 0.173393823046404 0.173523898316568 0.171874498026364 0.171996231802765 0.173160966044934 0.173984885849729 0.169110240298962 0.179979828810162 0.167764184281798 0.176338546790273 0.167871792590715 0.175984796400969 0.173226008172151 0.171182780479108 1 1 + 4936489 4936828 4936634.909 4934115 4937016 + gene protein_coding_gene FALSE TRUE AT1G14430.1 glyoxal oxidase-related similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT3G57620.1); similar to Os03g0258900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049609.1); similar to Os01g0677000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043851.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Glyoxal oxidase, N-terminal; (InterPro:IPR009880); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.148377101918104 -1.74074527360078 0.109889657461515 1 0.730675885269609 3.43132095614228 -0.148377101918104 0.0436174161243275
AT1G78310_at 3.67987417009676 3.73110721375454 2.88874249698565 3.26271719773150 3.15532850460906 3.73508795730273 2.88102292050211 3.16674993378415 3.31186370104281 3.32144126000719 3.13233953251814 2.37814815666184 3.34048794747426 2.82625600155008 3.00803522667964 2.59532873062111 2.72275369004325 2.8437064017124 2.80020189410140 0.222109579736584 0.218328858898639 0.223454546180062 0.226480492222678 0.230685997313310 0.219925560903146 0.229797525896143 0.226446415275078 0.218894322509500 0.224830823464991 0.219358686314932 0.220885303706422 0.224717491126432 0.22046804042104 0.240101905593272 0.219802604510707 0.249350417911333 0.218328858898639 0.230500968483654 1 1 - 29468961 29469444 29469183.455 29468549 29469946 - gene protein_coding_gene FALSE TRUE AT1G78310.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G35230.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa] (GB:AAL67588.1); similar to Os10g0577200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065489.1); similar to Os03g0190000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049224.1); contains InterPro domain VQ; (InterPro:IPR008889) -0.196419922260017 -1.74062493769762 0.109911463885421 1 0.730513223775768 6.31277092232484 -0.196419922260017 0.129530329285751
AT4G09090_at 1.11125438511386 1.06833192495855 1.16239945428138 1.29655666371226 1.14860084561853 0.933436457931082 1.22231569235599 1.10804346702750 1.74130394244374 1.60119334313108 0.770352301590781 1.33371649489179 1.45820763023830 1.21041441236970 1.12147760269410 1.44988205065061 1.43195280257483 1.06429123164506 1.27139464739936 0.193927532528390 0.193500879625155 0.194701723110650 0.19704370209739 0.192536618458255 0.192536618458255 0.197862334569065 0.197395098549913 0.205625660978263 0.19934723860716 0.193812153441292 0.193522003630295 0.197534559715585 0.195146879684074 0.193543211392616 0.198295486640341 0.193794927194227 0.198865341927204 0.196291538512252 4 4 - 5807338 5807532 5807424.455 5807217 5807707 - gene protein_coding_gene FALSE TRUE AT4G09090.1 glycosyl hydrolase family protein 17 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09465.1); similar to At4g09090 [Medicago truncatula] (GB:ABE83610.1); contains InterPro domain X8; (InterPro:IPR012946) -0.150082586902163 -1.74021746324905 0.109985332507556 1 0.729962472704073 2.51536775811987 -0.150082586902163 0.0487001620474187
AT1G05770_at 1.36779182454993 1.62519978463533 1.58309077173021 1.57644118686519 1.14593590352779 1.40315422000119 1.48827375977412 1.17786438678902 0.949855359206224 1.51123452396692 1.93764634193295 1.77991192925717 1.52232499069677 1.39084614741681 1.41605101480091 1.58523028043953 1.66309534097903 1.8922706846751 1.52635497335183 0.197729212339088 0.196532675150040 0.208897640692291 0.215662066879442 0.198208450381012 0.214758495574566 0.204002947501263 0.205759331418475 0.207156968283645 0.199386648344751 0.201068354184169 0.196269701800769 0.203446412037959 0.206381744917521 0.209957331372018 0.203581087630946 0.199101701611222 0.221574889480511 0.211601786847374 1 1|0 -|/ 1725576 1726126 1725818.5 1725387 1726270 - gene protein_coding_gene FALSE TRUE AT1G05770.1 jacalin lectin family protein similar to RTM1 (RESTRICTED TEV MOVEMENT 1) [Arabidopsis thaliana] (TAIR:AT1G05760.1); similar to unknown [Solanum tuberosum] (GB:ABA40466.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 0.165823443680226 1.73971883629046 0.110075786521387 1 0.72928861009481 2.90975416812565 0.165823443680226 0.0827806249142292
AT3G26640_at 5.92613818124118 6.0345592222238 5.7057969451637 5.7600540053736 5.96068426506967 5.89887617300828 5.5033931948016 5.6131417252129 5.39652684855491 4.85298744081276 5.11772337360146 5.3797999150504 5.23415005316528 5.31962768179376 5.30955964394275 5.6298554453052 5.17326279863208 5.52531707751367 5.07795266577514 0.242739462620692 0.236030493468998 0.234618132163141 0.225789485523235 0.221723285391527 0.242763621428035 0.223143355449706 0.229299473483669 0.235213630762764 0.221723285391527 0.227517556518012 0.227555943066707 0.223852406021549 0.228777080929974 0.228352335686577 0.221723285391527 0.242769178917413 0.224065805501615 0.221723285391527 3 3 + 9795008 9795526 9795359.091 9794459 9795694 + gene protein_coding_gene FALSE TRUE AT3G26640.1 transducin family protein / WD-40 repeat family protein similar to ATAN11 (ANTHOCYANIN11), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G12910.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.144525556597623 1.73955841424555 0.110104902328069 1 0.729071831473287 11.0229892891818 0.144525556597623 0.0302543559683963
AT2G38290_at 6.76043584524338 6.71066294356546 6.51326440266094 6.15691283812906 4.53747251526779 5.78447491046527 3.81559894827934 3.8930545235836 5.56805705080312 4.88038082000442 5.06720919207966 5.49412168764664 5.03535798088182 5.16311166347562 4.77262454450685 5.7229082092875 5.38113510332625 5.0348359501474 4.88168344036719 0.240174938465163 0.237980461575997 0.232375530217998 0.227045545580349 0.239798060142672 0.230215436869096 0.235294324098030 0.232730203262231 0.232791206717106 0.226035142582414 0.227475334771242 0.231372677687635 0.227831015816253 0.238653390892846 0.235527684106038 0.227901696567025 0.251866846092167 0.233342558214746 0.227542131605917 2 2|0 -|/ 16046775 16047606 16047103.889 16046553 16049461 - gene protein_coding_gene FALSE TRUE AT2G38290.1|AT2G38290.2 ATAMT2 (AMMONIUM TRANSPORTER 2); ammonium transporter|ATAMT2 (AMMONIUM TRANSPORTER 2) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively. Identical to Ammonium transporter 2 (AtAMT2) (AMT2) [Arabidopsis Thaliana] (GB:Q9M6N7); similar to ATAMT1,2 (AMMONIUM TRANSPORTER 1,2), ammonium transporter [Arabidopsis thaliana] (TAIR:AT1G64780.1); similar to putative ammonium transporter AMT2 [Lotus japonicus] (GB:AAL08212.1); similar to ammonium transporter [Medicago truncatula] (GB:ABE91133.1); similar to amt2-like protein [Medicago truncatula] (GB:AAN06953.1); contains InterPro domain Blood group Rhesus C/E and D polypeptide; (InterPro:IPR002229); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905)|Identical to Ammonium transporter 2 (AtAMT2) (AMT2) [Arabidopsis Thaliana] (GB:Q9M6N7); similar to ATAMT1,2 (AMMONIUM TRANSPORTER 1,2), ammonium transporter [Arabidopsis thaliana] (TAIR:AT1G64780.1); similar to ammonium transporter [Medicago truncatula] (GB:ABE91133.1); contains InterPro domain Blood group Rhesus C/E and D polypeptide; (InterPro:IPR002229); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905) 0.275982852911773 1.73933019771411 0.110146334461537 1 0.728763460127224 10.6809613551380 0.275982852911773 0.225002884062458
AT3G57270_at 1.39532766136438 1.34432777796735 1.21774338938159 1.3720655825348 1.26861995032699 1.54195347521400 1.01075262306713 1.08472992158669 1.56329861214401 1.40886294133753 1.40083610557120 1.15849539870870 1.68487343816967 1.25020180058265 1.56308409255954 1.55712610952369 1.35404990000320 1.90975475546808 0.988250137180356 0.203304812439492 0.207298228856898 0.212158761273099 0.204355129615979 0.213404426534445 0.203395276532461 0.202243871598126 0.206829757686837 0.207850577782207 0.206819810426023 0.203782890209360 0.211469360130517 0.208707713758835 0.204321298849268 0.206254164348052 0.202671848967435 0.211225704749424 0.205906413191274 0.202724442628478 3 3|0 -|/ 21202335 21203130 21202679 21202216 21204168 - gene protein_coding_gene FALSE TRUE AT3G57270.1 BG1 (BETA-1,3-GLUCANASE 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 17 similar to BGL2 (PATHOGENESIS-RELATED PROTEIN 2), glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57260.1); similar to beta-1,3-glucanase [Prunus persica] (GB:AAL30426.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.152988286610333 1.73898954385808 0.110208205452558 1 0.728303200472687 2.68191001282735 0.152988286610333 0.056501800192322
AT1G31250_at 2.11948401889646 2.18800711518710 1.67685471709416 2.03979085159604 1.47967777595147 1.86981609871980 1.95333013225623 2.25775764947437 2.57510131535008 2.58918196060632 2.39330996098882 2.80083887946757 2.43005997939011 2.3047710517052 2.63773868568462 2.53632906222945 2.54710672833728 2.84660081347774 2.51507955294571 0.222029741263236 0.224717474159644 0.223395064208006 0.222029741263236 0.225000495844752 0.224307188567998 0.227764916149082 0.229148164788220 0.228212855293311 0.229537257738545 0.224541319783344 0.222029741263236 0.222029741263236 0.222029741263236 0.227832591730120 0.222029741263236 0.227479457724719 0.233405289987554 0.229157903564914 1 1 - 11166660 11167048 11166814 11166538 11167528 - gene protein_coding_gene FALSE TRUE AT1G31250.1 proline-rich family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22485.1); similar to unnamed protein product [Homo sapiens] (GB:BAC87637.1); contains domain PRICHEXTENSN (PR01217) -0.180401541293554 -1.73882344479779 0.110238384424534 1 0.728078800128695 4.50903079729402 -0.180401541293554 0.106860670100744
AT2G05210_at 5.99656123309334 5.62739438425934 4.20774603657273 3.97252792122867 5.57907238656552 5.66195088340913 6.09043094071328 5.22550996017117 5.22770946509653 5.99690958706084 6.74879529268272 6.81532112176181 5.80352643110825 6.46051486442017 6.97661417300685 5.65429125630433 5.35914345679181 6.0286037405205 6.1886119917752 0.278717786606789 0.287805029358411 0.307151622069543 0.308940808333200 0.274164455356306 0.283927794476982 0.274164455356306 0.288722660870516 0.298572751519359 0.276082764667771 0.274164455356306 0.277176226874668 0.274164455356306 0.274164455356306 0.278518352694141 0.290091898259670 0.286672848373257 0.283492714445694 0.275331912595768 2 2 + 1893065 1893828 1893556.714 1890938 1894364 + gene protein_coding_gene FALSE TRUE AT2G05210.1 DNA binding similar to ATPOT1 (PROTECTION OF TELOMERES 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G06310.1); similar to Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE81442.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Telomere end binding protein; (InterPro:IPR011564) -0.226604439259122 -1.73864222020637 0.110271320090814 1 0.727833977998538 11.3127800382777 -0.226604439259122 0.168367947348874
AT1G05600_at 5.15305918789753 5.59697912495446 5.39350106341097 5.37906439864661 5.61256892920517 5.62809930911583 4.93152225932352 5.41044460338433 4.30828198192163 4.7508561682209 4.61194058386781 5.03548514856013 4.90105606060699 4.9755115772144 4.702793591444 5.23749251920048 4.9201426409687 4.88873151129586 5.25221428481172 0.212918093964212 0.207536046404609 0.208761463666842 0.218798718198689 0.208926329197966 0.211899972058721 0.207536046404609 0.215999369526274 0.219777046493514 0.209598077248093 0.213061517519257 0.211909370697517 0.215424794149467 0.212922965665032 0.210879890608796 0.208171557828998 0.220473049656666 0.213790872403295 0.212590244558179 1 1 + 1673114 1673610 1673384.182 1672098 1673747 + gene protein_coding_gene FALSE TRUE AT1G05600.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46100.1); similar to fertility restorer homologue-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82447.1); similar to Os01g0913800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045173.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.184500261849033 1.73827403994170 0.110338260301613 1 0.72733663275214 10.2279523673904 0.184500261849033 0.113067239163743
AT4G21510_at 6.22666363823769 6.31828848582468 5.16526891819458 5.25142086651711 6.73497949376829 6.55965942019619 4.96114959179372 5.64205873450635 6.40278150052004 5.90081546687543 5.71538238218417 5.44544559698956 5.85805795155679 6.05136022564458 5.42906979575148 6.0256422394979 5.81867685347617 5.43170255920059 6.43547190366158 0.199807597618776 0.199755475428028 0.199358914718929 0.210681704790893 0.210013783442733 0.203696942958454 0.214957579468926 0.202798307439709 0.209226805217597 0.200416903445497 0.203817278993727 0.199011951837977 0.205045467001389 0.199429300527812 0.204696298457443 0.200776368235398 0.199711463791080 0.200326373724671 0.199433522585691 4 4 - 11446205 11446894 11446541.545 11445861 11447175 - gene protein_coding_gene FALSE TRUE AT4G21510.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G05010.1); similar to At1g61340 [Medicago truncatula] (GB:ABD32592.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.191823513868131 -1.73790989244487 0.110404503322498 1 0.726844789537033 11.8415728890748 -0.191823513868131 0.123608969372717
AT1G30990_at 2.35036787438150 1.93892376529675 2.13036596208516 1.99452752182469 1.48782243680493 2.00638650587739 1.72113995692389 2.09032250722318 2.38891123061281 2.14988087249038 2.07357722566604 1.74908151181754 1.85343945805797 1.69292245656434 2.30552036135575 1.99669376155207 2.02424912501082 2.18321450691142 2.24682801109412 0.219778581714858 0.225018691093391 0.222042397352341 0.221116186094509 0.227513478208595 0.220821917938922 0.219778581714858 0.220486880772589 0.228334051703245 0.220749946339213 0.219778581714858 0.226060407133485 0.228238114542476 0.222643776319966 0.222820538992663 0.222329453239049 0.228424624890444 0.225411738195317 0.222246556518571 1 1 + 11052123 11052999 11052576 11052111 11053044 + gene protein_coding_gene FALSE TRUE AT1G30990.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT1G14960.1); similar to major latex-like protein [Rubus idaeus] (GB:CAA11844.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.198724494920201 -1.73667001148354 0.110630322154317 1 0.725170525779369 4.08833740243524 -0.198724494920201 0.133256899037818
AT3G05680_at 6.0287486631879 5.74354913876166 5.84718463540809 5.74209167886169 6.05504647202648 6.1613287625719 5.65482302093391 5.14398943859072 6.26322654031545 5.4063366539847 4.94191233856758 5.13805252209514 5.31655045301411 5.04428218215127 5.31287857253067 5.35099775730772 5.74329775773857 5.59290570765625 6.24337488896921 0.204491396057699 0.205566886684444 0.205107320275493 0.201116435385945 0.201089145222762 0.213389064524328 0.201089145222762 0.212001771417596 0.210622928988336 0.208911051408134 0.203915117352652 0.201296984748865 0.204762118735201 0.210847594568846 0.201089145222762 0.205890734800823 0.206531275302269 0.203561364638789 0.206125975056924 3 3 - 1661260 1661537 1661419.75 1660558 1671052 - gene protein_coding_gene FALSE TRUE AT3G05680.1 EMB2016 (EMBRYO DEFECTIVE 2016) similar to protein transporter [Arabidopsis thaliana] (TAIR:AT4G32760.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97029.1); similar to hypothetical protein MA4_111B14.30 [Musa acuminata] (GB:ABF71999.1); contains domain ARM repeat (SSF48371); contains domain FAMILY NOT NAMED (PTHR23185); contains domain gb def: ENSANGP00000015598 (Fragment) (PTHR23185:SF2) -0.178617188929314 -1.73649350033400 0.110662503852301 1 0.724932226453923 11.4351397375290 -0.178617188929314 0.104498392411759
AT2G42120_at 3.0923143666357 3.49287421786621 3.31795429494039 3.47533918117192 3.59839938010752 3.63895419234262 3.53795039407089 3.94325149848923 3.32662075524643 3.39845349178674 3.65942289071001 3.69840895811293 3.4571410746313 3.90233107921638 4.38728484302779 3.77842264890808 3.50370140410824 3.86010252985725 3.52653569001052 0.204929025210731 0.204670094509954 0.205005454659146 0.208176886815853 0.202123616689483 0.202375841269022 0.212957968594625 0.203952712164555 0.233033580981570 0.200861121097274 0.201498567442141 0.205272440936557 0.200861121097274 0.20575064516259 0.209318955034994 0.211397302819506 0.213603393519374 0.203671887219957 0.204390303695162 2 2|0 -|/ 17570537 17571293 17570876 17570235 17573110 - gene protein_coding_gene FALSE TRUE AT2G42120.1|AT2G42120.2 DNA polymerase delta small subunit-related Identical to DNA polymerase delta small subunit (EC 2.7.7.7) (POLD2) [Arabidopsis Thaliana] (GB:O48520); similar to Os03g0128500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048841.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85393.1); contains InterPro domain DNA polymerase epsilon subunit B; (InterPro:IPR007185) 0.177356379549353 1.73647385822486 0.110666085543736 1 0.724905709363364 7.11115731116275 0.177356379549353 0.102545931794584
AT1G74800_at 5.41866003745093 5.655617381051 4.79365021592998 5.20107469776904 5.4483250641385 5.38330859287671 5.19221463565426 5.38334113416185 5.42264382249578 5.14228535404251 5.2230537370874 5.65966040510444 4.94062377442731 5.34133750168421 5.29324806299832 5.22927885258176 5.03316748180256 4.56090955118358 5.31124870253572 0.205310402529592 0.204551228770776 0.22022080217046 0.209601007142019 0.204938823806732 0.209870017191622 0.216783215379368 0.207639613531079 0.216962174587686 0.216998020133206 0.208736665661084 0.208217602284186 0.208322586263282 0.209576311589104 0.207010710017579 0.204736008597658 0.204551228770776 0.221543470162186 0.215391991042673 1 1|0 -|/ 28105944 28106750 28106285.3 28105629 28108773 - gene protein_coding_gene FALSE TRUE AT1G74800.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G27120.1); similar to galactosyltransferase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83183.1); similar to galactosyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99414.1); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.168884013283462 -1.73633671366017 0.110691096436545 1 0.724720566905128 10.5356335768207 -0.168884013283462 0.088731654018294
AT2G20150_at 2.4907921055394 2.98044381158045 3.34238633030786 3.10274900205678 2.49212286770922 3.57088899683617 3.09307092138735 2.68401282347454 2.77320245352885 3.33031792866765 3.2785277566947 3.07225486783139 2.95941405669459 3.42150962572133 3.13703783021669 2.98084073428141 3.37668593364601 2.65729512419409 2.54259495508082 0.190126292651418 0.186255052844450 0.189796450989822 0.192731297043329 0.195872042367798 0.186177922776038 0.187977944192999 0.189047756469068 0.197148369301933 0.191664521927986 0.189212795982665 0.192000152526149 0.185841764538310 0.186757747903005 0.187721641358347 0.186132792153314 0.185841764538310 0.195120632417782 0.202083788438050 2 2 + 8705280 8705489 8705379.727 8705280 8705561 + gene protein_coding_gene FALSE TRUE AT2G20150.1 unknown protein 0.271682089566495 1.73600740653385 0.110751172586786 1 0.724276040232177 5.96580045082104 0.271682089566495 0.220822750776946
AT4G18740_at 5.34672803609095 6.18374948396307 5.94979989120691 5.83298952177647 7.21436686267352 6.5396546912427 8.34200503053325 7.61383758600585 6.71588874892633 7.31221965481704 8.7806538185395 7.42063080349451 7.5140547294859 7.4745720301885 6.04742043695494 7.37649925871035 6.30849194445946 6.37082235636564 7.65057139494324 0.298846200167785 0.296605422493046 0.308498218209367 0.296605422493046 0.301904766347636 0.326703180571233 0.296722822638926 0.308697594059225 0.334420924932346 0.305365364116964 0.303055188835003 0.296605422493046 0.302742314628191 0.316539989909801 0.303534583264794 0.298778180943441 0.335850637707164 0.323610989528495 0.305440655737513 4 4 - 10303554 10304164 10303891 10303425 10304583 - gene protein_coding_gene FALSE TRUE AT4G18740.1|AT4G18740.2 transcription termination factor| contains InterPro domain Rho termination factor, N-terminal; (InterPro:IPR011112)|contains domain Rho termination factor, N-terminal domain (SSF68912) -0.275980359855367 -1.73581292460166 0.110786666106011 1 0.724013532899687 13.8218262738551 -0.275980359855367 0.225616689272928
AT2G47490_at 7.72200755021935 7.48978445601178 7.94481160494653 7.9520841403096 8.04883953412724 7.39306871285662 9.15256648751837 8.91403101718522 8.64030025208999 8.34899203465887 8.7337067423942 8.73937238540407 8.81682962196403 8.93482055756436 8.26879147108684 8.52575256032679 8.66354513990413 8.02741225061437 8.487741394275 0.156104710646542 0.154675907449795 0.156425960006920 0.156405319903406 0.150892267715360 0.163868065250055 0.156440697295633 0.151207754431175 0.163685047539706 0.153675073797232 0.152661239154688 0.151900177585658 0.1566896457043 0.15029730445508 0.1581641713007 0.15029730445508 0.162455176896631 0.161766013437595 0.154166210897532 2 2|0 +|/ 19495313 19496339 19495849.1 19494316 19496689 + gene protein_coding_gene FALSE TRUE AT2G47490.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT1G25380.1); similar to Os01g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043181.1); similar to Os05g0357200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055296.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE84962.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) -0.194231049428811 -1.73579129338322 0.110790614499630 1 0.723984336525856 16.6177108886462 -0.194231049428811 0.127276381236632
AT1G10380_at 4.40894414565016 4.76300489318605 3.54653237312529 4.16460211250299 4.28963436742275 4.50829304953076 5.70142687658874 6.13571189854365 5.29523523080071 4.02378330446037 4.52586953899999 5.72444764470414 5.09241444218859 5.59944552147 5.47834969708289 6.05331987619922 5.12771724023854 5.0499527093167 4.565068101453 0.219194768364648 0.219749506020510 0.238043306120977 0.222790434245599 0.217706661466276 0.222726231456334 0.228768408836778 0.220207928010705 0.235467319451346 0.227715184082543 0.226550070919226 0.225024283614777 0.225048497386521 0.231326497437053 0.222318334056669 0.220216034025511 0.222896527582846 0.218217085618907 0.220934407223665 1 1 + 3401054 3401822 3401492.727 3400607 3402325 + gene protein_coding_gene FALSE TRUE AT1G10380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17350.1); similar to Os05g0409100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055526.1); similar to Os06g0364500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057608.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44115.1) -0.210797886488191 -1.73541715237309 0.110858927338923 1 0.723479376322333 9.66950294590865 -0.210797886488191 0.149247414351646
AT4G02120_at 7.46657255292138 7.25588499014514 7.44582442670182 7.295471410454 7.83470344155572 6.9466836330349 8.00425389138312 7.84338767783452 7.34143671017857 7.79956497353813 7.66132786789651 7.67773669230714 7.22016982647444 7.57640108193648 7.07218409465319 7.83379228627214 7.18057969118956 7.28083847442901 7.7152191678192 0.197544687759376 0.189273595993512 0.192622303322665 0.197344642731971 0.190545648358622 0.207388094208212 0.194835425759185 0.192844713321418 0.194141375634571 0.197990861558048 0.201284872964515 0.19634799881411 0.192742854480541 0.190303655313040 0.204386793524763 0.189051836658722 0.222597790160241 0.207259172863314 0.192557397945920 4 0|4 /|+ 943022 943923 943464.75 940778 944291 + gene protein_coding_gene FALSE TRUE AT4G02120.1 CTP synthase, putative / UTP--ammonia ligase, putative similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3G12670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99560.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.221357791042462 -1.73539974460182 0.110862106674566 1 0.723455883283999 15.0399072708739 -0.221357791042462 0.162473576155219
AT2G20270_at 7.55832249669995 7.61477785735019 7.21001839348664 6.84170350912039 7.50763411580243 7.22777603264711 7.89206828681319 7.72599612553859 6.06594826418986 6.34996587874697 7.20839386808554 7.60254721612046 6.21315442166842 7.169655917585 7.90399879281592 6.53551094663676 5.9550064019284 6.68208066549591 5.80559089450262 0.202711469870970 0.202454174561204 0.204865836683975 0.209719378395440 0.195906844952642 0.206446564393434 0.197452995941644 0.206363470857185 0.203477452826149 0.209569550878195 0.195906844952642 0.195906844952642 0.197633389316569 0.201710015413981 0.202554682323888 0.195906844952642 0.225445586430542 0.205868682163181 0.205647256907203 2 2|0 -|/ 8745508 8746671 8746425.444 8744786 8746758 - gene protein_coding_gene FALSE TRUE AT2G20270.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S12, chloroplast precursor (AtGrxS12) (GRXS12) [Arabidopsis Thaliana] (GB:Q8LBS4;GB:Q9SK75); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G28730.1); similar to glutaredoxin protein family-like [Oryza sativa (japonica cultivar-group)] (GB:BAC56010.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin, eukaryotic and viruses; (InterPro:IPR011899); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.166975168737951 1.73513993786781 0.110909567244583 1 0.723105270189174 13.9386013728182 0.166975168737951 0.0856128499495662
AT1G54710_at 7.11564817608574 7.56037401494673 7.39745473574246 7.80350670032889 7.80573777916194 7.37226297684124 6.97549568489571 7.6874716542104 6.51039788773892 6.95800438192744 7.15715398984823 7.66162872115172 7.00023492055361 7.30986393688663 6.99201019630732 7.74397014288853 7.19410145531455 6.89278912718263 7.63879557638192 0.242739268604929 0.240213557858461 0.251959157404576 0.245762596436017 0.247750949110891 0.256444923767012 0.244750283272151 0.241744671670093 0.263495785920658 0.246430806658791 0.239516790562914 0.240988175992841 0.242404485352086 0.246471884911107 0.247969901562173 0.239516790562914 0.25518207854886 0.254363222843192 0.252234268443098 1 1 - 20420794 20421513 20421039.091 20420437 20424702 - gene protein_coding_gene FALSE TRUE AT1G54710.1 AtATG18h (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) h) similar to AtATG18g (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) g) [Arabidopsis thaliana] (TAIR:AT1G03380.1); similar to Os05g0405900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85085.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.234114805700605 1.73499758579350 0.110935579376032 1 0.722913175661092 14.6045948035847 0.234114805700605 0.177957880158775
AT2G20800_at 1.46252717093945 1.32724781210196 1.76322365950963 1.67262948269894 1.34271937559539 1.40902205433152 1.35141966311568 1.34394680798558 1.49284730505623 1.63373439147905 1.63080325575149 1.63162821985555 1.81463675418223 1.28395119043708 2.01761792990015 1.4744409740146 1.74313927389094 1.57012313141003 1.47274464030119 0.194729559651274 0.192820278816019 0.207084589798914 0.197959297338208 0.192820278816019 0.193558891355421 0.194983731960926 0.194771074582242 0.201702086436866 0.197803444808303 0.192820278816019 0.192820278816019 0.193641962299482 0.206883992742448 0.198715772770296 0.194728622237049 0.205483037789626 0.202579571884554 0.200171149094244 2 2 - 8960357 8960891 8960552.636 8960333 8962837 - gene protein_coding_gene FALSE TRUE AT2G20800.1 NDB4 (NAD(P)H DEHYDROGENASE B4); NADH dehydrogenase similar to NDB1 (NAD(P)H DEHYDROGENASE B1), NADH dehydrogenase/ disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G28220.1); similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G21490.1); similar to NDB2 (NAD(P)H DEHYDROGENASE B2), disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05020.1); similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand [Medicago truncatula] (GB:ABD32606.1); similar to external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum] (GB:CAB52797.1); similar to Os06g0684000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058394.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.144148545866487 1.73447325369095 0.111031438491151 1 0.72220569652703 3.04854268834765 0.144148545866487 0.0304496054625601
AT4G26930_at 0.799012800481098 0.456776766149763 0.695544320240024 0.684037884712362 0.697827497461232 0.702513421792459 0.482681105341594 0.63706726679391 0.448977898252321 0.330566729979364 0.430290938955410 0.793227830299293 0.738311274641184 0.717924659179452 0.389577656290831 0.797675270282509 0.919231037859207 0.646387977316555 0.623363261630007 0.210075858721871 0.197750487546067 0.202969411005425 0.200924947483936 0.202253709661501 0.198520588229373 0.197750487546067 0.198047063245203 0.197750487546067 0.204683177071573 0.200977745143276 0.200764492397772 0.197750487546067 0.202267127568889 0.209167731828359 0.204487474358597 0.200919662018974 0.203512164366589 0.198411265560012 4 4 + 13528561 13529149 13528825.455 13527776 13529178 + gene protein_coding_gene FALSE TRUE AT4G26930.1 MYB97 (myb domain protein 97); DNA binding / transcription factor Encodes a putative transcription factor (MYB97). similar to MYB120 (myb domain protein 120), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G55020.1); similar to protein 3 [Petunia x hybrida] (GB:CAA78388.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.156269331837876 1.73422397218848 0.111077038639856 1 0.721869381592783 1.21778977981670 0.156269331837876 0.0650084505497251
AT4G37050_at 1.48984615758511 1.46207831980582 1.80065602921272 1.66032497343616 1.41313364285708 1.16990131335992 1.90031534412681 1.79620087799282 1.82856741087005 1.78343058081316 1.31873038608775 1.86762485441198 1.68503050897219 1.78006014617116 1.55092935111073 1.63391885126429 1.88117961791691 1.60971930490750 1.83715875786126 0.189691033603576 0.188531517425093 0.194050345188672 0.189938374748667 0.188756492564922 0.190583731299092 0.197045629947030 0.193230258796400 0.191863279480097 0.188223249948948 0.193294162501785 0.193595592763612 0.195107706920285 0.197518967658382 0.190080495408778 0.19180509138496 0.19300372723325 0.192008486013001 0.188223249948948 4 4|0 -|/ 17457445 17458379 17457872.7 17457129 17459764 - gene protein_coding_gene FALSE TRUE AT4G37050.1 PLA V/PLP4 (Patatin-like protein 4); nutrient reservoir similar to PLA IVA/PLP1, nutrient reservoir [Arabidopsis thaliana] (TAIR:AT4G37070.2); similar to patatin-like protein 1 [Nicotiana tabacum] (GB:AAF98368.1); contains InterPro domain Patatin; (InterPro:IPR002641) -0.150796320368672 -1.73408822119548 0.111101878163218 1 0.721686245612767 3.32769943769045 -0.150796320368672 0.0520505296191324
AT4G15545_at 12.4392865723188 12.4119339190999 12.7760230373244 12.7661962154128 12.9230160146574 12.5736607240743 13.0077533112202 12.9566446045165 12.4897736188921 12.9016255861680 13.0018319056925 12.9233410568274 13.1679462431136 13.0179435874791 12.7714013689031 13.2110996270753 12.9827103644503 13.0150683682779 12.8829042054821 0.0737920087147276 0.0720034467841501 0.0772793150181252 0.0739920795107298 0.0720034467841501 0.0784559959523107 0.0722119380926066 0.0739890412798567 0.081963508467414 0.0720034467841501 0.0750806494552528 0.0720034467841501 0.0720034467841501 0.0744943112487705 0.0788414996694789 0.073724816786918 0.0816786753914333 0.0743491183499323 0.0724734231944062 4 4 + 8876652 8877530 8877046.818 8875916 8877797 + gene protein_coding_gene FALSE TRUE AT4G15545.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16520.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85086.1); contains InterPro domain DNA topoisomerases I, dispensable insert, eukaryotic-type; (InterPro:IPR009054) 0.154568037229183 1.73378833422358 0.111156768788291 1 0.721281707474953 25.6165737758655 0.154568037229183 0.0613077631495546
AT1G16590_at 2.57435125620058 3.15429441026492 2.8174683618456 3.27674718488595 3.61377280214668 2.96058661154844 2.73067242971898 2.55710503173542 2.40868602745035 2.68622345606431 2.26824806458522 2.46731338024527 2.91611279247078 2.75051160012616 2.53706054010859 2.4454811094193 2.37280892429605 2.70312188623214 2.43630781571189 0.253676707725207 0.25697355059093 0.262923187319570 0.255923765743794 0.275330338977573 0.256526956928029 0.257391109098937 0.260488902503841 0.260784792328030 0.254763127864129 0.253676707725207 0.256989704889973 0.259941416693303 0.253923413239104 0.260595551380262 0.257176777026392 0.263226546500082 0.272956724778411 0.256780397993045 1 0|1 /|+ 5674210 5674823 5674509 5673788 5675124 + gene protein_coding_gene FALSE TRUE AT1G16590.1 REV7 (Reversionless 7); DNA binding putative translesion synthesis polymerase zeta subunit, homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). similar to DNA-binding HORMA [Medicago truncatula] (GB:ABE88777.1); contains InterPro domain DNA-binding HORMA; (InterPro:IPR003511) 0.230107239451641 1.73352407562165 0.111205158320464 1 0.720925261503858 5.49461878784047 0.230107239451641 0.173404653912357
AT4G38060_at 7.88441911094853 7.9900965817976 8.66046000873556 8.74577544403712 8.74599282725546 8.3838915799944 8.13932455574533 8.17072569672237 7.52383526704282 8.12783392081671 7.40853128296394 7.05824207639864 8.21331284757349 7.67868592067939 6.57227559697764 8.30027713319813 8.57207880799453 7.40375922093746 8.1216225165853 0.155251636176558 0.152137388074996 0.156338989883624 0.148661604815644 0.155900785381865 0.157396281209707 0.155839611881909 0.149329644910053 0.159256399954541 0.157778629478402 0.157248923321110 0.161792504742343 0.150891648352593 0.155383894462736 0.164814839098102 0.150064304556189 0.162916066722849 0.158437296655070 0.150171451738377 4 4 - 17873999 17874339 17874139.455 17873479 17874798 - gene protein_coding_gene FALSE TRUE AT4G38060.1|AT4G38060.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65480.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84476.1) 0.157176635697152 1.73324202571377 0.111256826624340 1 0.720544849327397 16.1277486901489 0.157176635697152 0.0671465021637798
AT1G55030_at 0.588112359558971 1.03546015636806 1.16315127523813 0.84892641006787 0.860212967416024 0.977904198086053 0.502932866371576 0.743615917350299 0.986003524194637 1.15106952897828 1.00985352184552 0.645348799755977 0.941003290091328 0.975449125827693 0.89313424628482 1.02766450652002 1.35043482786622 1.28532747050367 0.57334572013481 0.200098821382863 0.203530409053232 0.200656955847616 0.202974244774085 0.205259935127595 0.203709493356793 0.208799923677839 0.208763774320585 0.222690554125203 0.199803091833484 0.206020948121399 0.205219751719597 0.199691524190891 0.199100326244457 0.204664361866202 0.200927795729605 0.206875546526063 0.201575479242757 0.205151034478913 1 1 - 20534085 20534712 20534494.273 20534084 20535435 - gene protein_coding_gene FALSE TRUE AT1G55030.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.178786218470394 1.73273032917505 0.111350618742855 1 0.719854786859515 1.79978946781853 0.178786218470394 0.105355598884604
AT1G54380_at 4.48901912294823 4.41136528237481 4.35235950615107 4.14423897398331 4.23948614744671 4.38470145220498 4.51934758815433 4.55865319457474 3.53244062185608 4.37955694033274 3.93314866794348 3.76852605769454 3.86533431820635 3.95525847399505 4.45567158377112 4.13520165423393 3.97469505666185 4.65619801515883 4.61562038848772 0.202426854597442 0.201048238761312 0.200400731048622 0.201831095872882 0.201886548911876 0.204234956064331 0.198278156160199 0.202468414872521 0.207508110918934 0.196491589780149 0.203876582045710 0.196334029165832 0.200164188359201 0.196334029165832 0.199847550789160 0.196334029165832 0.208171659661024 0.201281849822157 0.204830255429219 1 1|0 -|/ 20301968 20302552 20302261.3 20301632 20304575 - gene protein_coding_gene FALSE TRUE AT1G54380.1 spliceosome protein-related similar to spliceosome protein-related [Arabidopsis thaliana] (TAIR:AT2G42510.1); similar to Os11g0293300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067712.1); similar to Ca2+-independent phospholipase A2 (ISS) [Ostreococcus tauri] (GB:CAL55601.1); contains InterPro domain Survival motor neuron interacting protein 1; (InterPro:IPR007022) -0.148634099416939 -1.73270228561529 0.111355761082971 1 0.719816971055258 8.5218348478216 -0.148634099416939 0.046427921803352
AT1G72890_at 6.93784279333285 7.65260549221113 8.70451832129215 8.7883457414484 8.46651598407466 8.17463917388655 7.84181733826915 7.98831324327069 6.74325049545871 7.27255706253595 6.49584611765254 5.65988274254137 6.71694087168789 6.77812044138056 5.28705048307897 7.50979782185947 7.37598720546173 6.61203861332817 7.22747477304097 0.201146707429769 0.188820640867217 0.194887677609420 0.198362297945833 0.193456725168934 0.198000063289510 0.195262256581640 0.197183811364503 0.203763243183659 0.193853127338294 0.201583528190858 0.198052023905562 0.191410548234187 0.203378899678981 0.227860820972534 0.188820640867217 0.202053412257346 0.194323801767753 0.193955447214325 1 1 + 27434806 27435249 27435046.273 27433608 27435378 + gene protein_coding_gene FALSE TRUE AT1G72890.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72950.1); similar to resistance gene analog PU3 [Helianthus annuus] (GB:AAL07535.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.200862007591554 1.73246938921362 0.111398475497238 1 0.719502930525994 14.8871008347077 0.200862007591554 0.136764201328178
AT2G47320_at 10.4136840935115 10.4885235756187 10.2766181337703 10.4144405136457 10.5673780826238 10.2381405908395 10.1813412393699 10.1745431803191 9.91457496388298 9.63778420546712 9.93997356629756 10.0071396582294 9.90654171065987 9.96207912754672 10.2354764466165 9.8157175745449 9.81006289990792 10.2042725873601 9.65049412024958 0.109719345506838 0.103869082385697 0.109256386498819 0.107935891333023 0.108113967189029 0.105882058439736 0.106223224141776 0.105513751248397 0.110127623398944 0.109985211461616 0.106157413865043 0.107402687125402 0.103869082385697 0.105123914864789 0.111201917836784 0.104604837320594 0.11199165665424 0.106719165685593 0.107282643268841 2 2|0 +|/ 19434907 19435871 19435411.4 19434442 19436003 + gene protein_coding_gene FALSE TRUE AT2G47320.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein Identical to Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial precursor (EC 5.2.1.8) (PPIase CYP21-3) (Rotamase CYP21-3) (Cyclophilin of 21 kDa 3) (CYP21-3) [Arabidopsis Thaliana] (GB:Q94A16;GB:O22906); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G66654.2); similar to Os07g0476500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059626.1); similar to hypothetical protein DDBDRAFT_0216615 [Dictyostelium discoideum AX4] (GB:XP_646869.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.155247412271900 1.73239331875196 0.111412430412534 1 0.71940036096139 20.2040548643433 0.155247412271900 0.0631209611933763
AT3G11390_at 0.72486522433435 0.819173997785738 0.633192971441965 1.19749960326427 0.482202824407524 0.645138804945338 0.655926546974222 1.07960769699266 1.21846029413805 1.28791372580566 0.657872384143438 0.867692197724613 1.31402953079780 1.17651540914441 0.963833320828232 0.667440748499073 1.21095988042415 1.13044844946897 1.40695390657821 0.195188676770851 0.192270686142317 0.200909843434492 0.196766901195448 0.195315791683467 0.194551867804948 0.202957805561708 0.200654059430727 0.207477254436711 0.205166005339578 0.200757976608005 0.200516648945138 0.206119753558458 0.201715362134611 0.192270686142317 0.194383099305941 0.199113518025703 0.195786190876327 0.194472429144688 3 3 + 3571411 3571920 3571655.364 3569834 3571966 + gene protein_coding_gene FALSE TRUE AT3G11390.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11385.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11370.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11402.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.193114233776054 -1.73154837938922 0.111567538064522 1 0.718261247522667 1.93122177491966 -0.193114233776054 0.126387967684783
AT1G03560_at 3.61044883055101 3.80498798981977 3.26770701104737 3.30202936777833 3.8164440481439 3.46596693785639 3.98471586262254 4.04262659285907 3.68877366209693 3.39072784863953 4.03257555506179 4.03929430876662 3.77234700975452 4.18623621587568 3.76397111917571 4.04869719274815 3.57652593215087 3.59890344746931 4.31072505048887 0.224478445223441 0.225942912664114 0.22457723229127 0.233509908034728 0.228377278728805 0.239097874089047 0.226809638105244 0.230004442621149 0.237514502204925 0.228440664853700 0.224453145939552 0.229823326917428 0.2303262998983 0.230783587960794 0.233412526969285 0.22295947657934 0.232918555460880 0.225142999885341 0.226186805710547 1 1 - 890450 890993 890778.636 890156 892410 - gene protein_coding_gene FALSE TRUE AT1G03560.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to putative fertility restorer homologue [Oryza sativa (japonica cultivar-group)] (GB:BAC83297.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.15854065860319 -1.73137446262239 0.111599488520961 1 0.718026816361864 7.49889634743502 -0.15854065860319 0.070340146619995
AT1G48940_at 0.809110476327562 0.738893352090213 0.737945779337403 0.580118804689569 0.521332148948757 0.619856244957167 0.507851962024004 1.32127025883998 1.24396750008165 0.725144248250208 0.80456428934468 0.724733221491385 0.743710204755341 0.625916784348204 1.18456270057155 0.634420577871668 0.568969312888766 0.649443450885197 0.81010928920869 0.198877319347536 0.198299197684305 0.195946034460333 0.205430278444668 0.198089691726000 0.195591986518028 0.195216461759411 0.200940981976636 0.201446891686758 0.196658746989528 0.209474128117023 0.196274019324150 0.199015396735222 0.199294606305553 0.197213240041047 0.199894603604028 0.204567679872838 0.195216461759411 0.196511251590393 1 1|0 -|/ 18109507 18110049 18109778.2 18109476 18110090 - gene protein_coding_gene FALSE TRUE AT1G48940.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G18590.1); similar to NtEPc [Nicotiana tabacum] (GB:BAA75495.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.206917606290565 -1.7312008327824 0.111631394482404 1 0.717792784387812 1.56377091854339 -0.206917606290565 0.144911569638960
AT4G17220_at 1.88981228460134 1.61372080318025 2.50387009977975 2.01759568693138 1.89457829926693 2.02475122030111 1.41508284026627 2.04914461767545 2.98024202736976 2.08195797262205 2.79626801400234 2.42635335771155 2.68816682864851 2.32599659147022 1.82257881312411 1.78419612176531 2.34100021861845 2.44451646704750 1.77267834238553 0.169501742467721 0.17569264914978 0.170253103242171 0.176146340163667 0.172679626897849 0.171449750810880 0.175443105002432 0.181123016260805 0.173897493877695 0.172390214356241 0.170487911761725 0.171547081944451 0.181340465648203 0.174815154853698 0.179226149364333 0.172565046298331 0.171212544932739 0.171965115340715 0.17774499517049 4 4|0 -|/ 9657216 9657757 9657552.3 9656849 9659474 - gene protein_coding_gene FALSE TRUE AT4G17220.1 ATMAP70-5 (microtubule-associated proteins 70-5); microtubule binding Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like domain containing protein [Brassica oleracea] (GB:ABD65132.1); similar to Myosin II heavy chain-like domain containing protein [Brassica oleracea] (GB:ABD65109.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) 0.209300230447509 1.73092922546317 0.111681321109928 1 0.717426715552621 4.22953314767078 0.209300230447509 0.148026860359332
AFFX-TrpnX-3_at 1.07927280568104 0.88967783768771 1.15761461132706 1.10943137495626 0.982508274541604 1.39339556496650 1.1463614168425 0.978563419749136 1.37400374166741 1.07692531102243 1.42481056311268 1.1792965010316 1.39611715164164 1.48545538022297 1.51317372517078 1.16580921570745 1.52084713383709 1.45125002248122 1.14359208474515 0.151250626862502 0.151344288991099 0.155004323388015 0.157454568628975 0.150622450708011 0.152770476580677 0.153208028241987 0.151307586576699 0.156836083300428 0.158929258163421 0.155134237487491 0.151197976104928 0.154222942014884 0.154385586877247 0.157386360720176 0.152593030231229 0.153903953891858 0.153094121939301 0.155286744770161 NA NA NA NA NA FALSE FALSE 0.165594917815053 1.73058801212532 0.111744071144287 1 0.716966875696792 2.38723750028348 0.165594917815053 0.0839364018340511
AT3G02490_at 4.42841373290189 5.27326327554976 4.81883525668679 4.81612696437664 4.92728860930063 4.61429810085328 5.19968199348631 5.24724891117673 4.76308725424567 4.93055350292439 4.25984746460012 4.73125666408075 4.83892903249486 4.62902274054673 4.95613353688447 4.95521059313675 4.88547396545189 4.96022766735342 5.20223019073553 0.181924567422128 0.182369441078743 0.191437611004255 0.189721427677592 0.186849460348870 0.195270137458795 0.183309542147348 0.187372358315185 0.189667173475748 0.181785060020941 0.188243415673876 0.191077954123478 0.192036711542211 0.200454184100043 0.194070020417865 0.186181058574002 0.181257923748943 0.186480418495004 0.191792095459049 3 3 + 515081 515584 515378.364 513532 515932 + gene protein_coding_gene FALSE TRUE AT3G02490.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15980.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96873.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.215646176687123 -1.73057378228219 0.111746688739274 1 0.716947699736423 9.78679611756008 -0.215646176687123 0.156133649829249
AT1G73170_at 9.22869082648503 9.15757315961415 9.2952897708262 9.22467028840726 9.60278258704595 9.35851168736577 9.65187185357073 9.6636794112191 9.39510154813785 9.8964860492181 9.63233200153913 9.5168625201676 9.51886266088891 9.43863793707943 9.2625189128866 9.80777190717586 9.52256323215592 9.42849047415186 9.98025238356997 0.0880038193359074 0.0835546516862764 0.0862738308165835 0.0867990165559015 0.0854834874199748 0.086661653177289 0.0878244466007196 0.0884882135635684 0.0939743142557748 0.0860479325530256 0.0869403722901084 0.0861590271116777 0.087199868451689 0.0888534657116695 0.087699932144788 0.0893127737806693 0.0892138490607368 0.093202025211499 0.0889992681399922 1 1 - 27515385 27516060 27515690.273 27515322 27518458 - gene protein_coding_gene FALSE TRUE AT1G73170.1|AT1G73170.2 ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase similar to sporulation protein-related [Arabidopsis thaliana] (TAIR:AT3G10420.2); similar to ATPase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79945.1); similar to Os07g0187400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059076.1); similar to Os06g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056852.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.148207633598632 -1.73048267318059 0.111763449664789 1 0.716824924217232 19.0345261727656 -0.148207633598632 0.0457377042303864
AT3G45500_at 1.79547583293762 2.35642343079711 2.45589534565093 2.62914641807382 1.86795897253415 2.13560733474005 1.95034565129037 2.179772702921 2.05269485697929 2.20833260862177 2.27974884869460 2.02331976178199 2.42755109817643 2.27419478021743 2.17417705715782 2.25157664856975 2.77257906141779 2.17605894762976 2.11194720025094 0.180035827591487 0.186414550481288 0.184643902276547 0.180035827591487 0.180035827591487 0.185745110813623 0.186973050984864 0.183049540302322 0.188360852846935 0.180662991924088 0.182039936968501 0.184073091393746 0.183059062616622 0.185067564049771 0.182409093518652 0.190423515132349 0.180035827591487 0.18560077442924 0.196023730017411 3 3|0 -|/ 16699481 16700641 16700241.2 16699403 16700678 - gene protein_coding_gene FALSE TRUE AT3G45500.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G45580.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.187361750050788 1.73002986061165 0.111846785101418 1 0.716214780199727 4.38219104315465 0.187361750050788 0.118507773058303
AT1G78920_at 9.29103072393774 9.17480638272516 9.26958795633088 9.259719829025 9.30948121479316 9.05567863420916 8.57193327391739 8.54480805638925 8.8932756201801 8.6608665555959 8.59600819339107 8.6810024728439 8.58680633015821 8.63650278393195 8.88803852673361 8.55716088190066 8.56994643120527 8.66446292709404 8.47750371298198 0.106230330673464 0.103712696785227 0.11697095459678 0.105540140536639 0.106911215904679 0.113136023971597 0.102926433394219 0.106983551443718 0.111142318726357 0.107170241553249 0.114202266819900 0.107291887816637 0.102817720651112 0.114004125466251 0.110298263116835 0.103654705084781 0.109016903979039 0.106849978596200 0.108661949838506 1 1 + 29680834 29681616 29681267.545 29676386 29681885 + gene protein_coding_gene FALSE TRUE AT1G78920.1 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) vacuolar-type H+-translocating inorganic pyrophosphatase Identical to Pyrophosphate-energized membrane proton pump 2 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 2) (H(+)-PPase 2) (Vacuolar proton pyrophosphatase 2) (AVP1-like protein 1) (AVPL1) [Arabidopsis Thaliana] (GB:Q56ZN6;GB:Q9LDJ4;GB:Q9MB70;GB:Q9ZVB1); similar to vacuolar-type H+-translocating inorganic pyrophosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G16780.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51797.1); similar to vacuolar-type H+-translocating inorganic pyrophosphatase [Cyanidioschyzon merolae] (GB:BAE19660.1); similar to H+-translocating pyrophosphatase [Zea mays] (GB:ABK51382.1); contains InterPro domain Inorganic H+ pyrophosphatase; (InterPro:IPR004131) 0.149124035750921 1.72966291832725 0.111914358027032 1 0.715720404441684 17.7219839412460 0.149124035750921 0.0485655043789787
AT2G36690_at 1.49129105741048 1.46752752842291 1.59234893052857 1.38156599503138 1.57044863355061 1.68498981490876 1.36290348383221 1.35630175553650 1.47753977391364 1.16210366549256 1.39586044085655 1.42132127976578 1.25014973994550 1.37549042077059 1.84489241388839 1.33249456963613 1.48811319093401 1.72739939075731 1.33212323845975 0.227455459412321 0.245479556734231 0.241203816268868 0.235270363184315 0.233531957139325 0.231336266619179 0.241926586144985 0.232309812269197 0.245349011673568 0.240327960673298 0.243320083938677 0.230248748955226 0.229109250264642 0.235471654137565 0.256116566595455 0.228963966894568 0.241112564942095 0.238957325284493 0.232374455009306 2 0|2 /|+ 15388303 15388980 15388612.125 15387009 15389066 + gene protein_coding_gene FALSE TRUE AT2G36690.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT3G60290.1); similar to putative dioxygenase [Oryza sativa (japonica cultivar-group)] (GB:BAD46601.1); similar to Os09g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063989.1); similar to Os08g0560000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062506.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.146687671034139 1.72796810118416 0.112226937909631 1 0.713437724186091 2.89011585328998 0.146687671034139 0.0417336010357203
AT2G24790_at 10.7112275045104 10.9722907060379 10.6921200959917 10.7931235719244 11.4122194961142 11.0844509212096 11.3023213793120 11.3169663951435 11.3958645428705 11.2792590294199 11.1966841537589 11.1930355832173 11.1630224192766 11.0389707263039 11.0805609102897 11.2181917064408 10.7994582211979 11.1547130634692 11.3624491069558 0.0743156332884754 0.0735496621864985 0.0758530723914688 0.0764255239036128 0.0771995076570867 0.0778374885727698 0.0754112382917359 0.0764933412623419 0.075320157416836 0.0748427052568519 0.0728279633626468 0.0736292159668717 0.0742893518886591 0.0773789761701936 0.0780531546246713 0.0728279633626468 0.089343493605316 0.0752069966891065 0.075748769192383 2 2 + 10574334 10574981 10574615.909 10573977 10575224 + gene protein_coding_gene FALSE TRUE AT2G24790.1|AT2G24790.2 COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding|COL3 (CONSTANS-LIKE 3); zinc ion binding Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching. Identical to Zinc finger protein CONSTANS-LIKE 3 (COL3) [Arabidopsis Thaliana] (GB:Q9SK53;GB:Q8LDY3); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G24930.1); similar to CONSTANS-like 1 protein [Raphanus sativus] (GB:AAC35496.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315)|Identical to Zinc finger protein CONSTANS-LIKE 3 (COL3) [Arabidopsis Thaliana] (GB:Q9SK53;GB:Q8LDY3); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G24930.1); similar to CONSTANS-like 1 protein [Raphanus sativus] (GB:AAC35496.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.160250468347735 -1.72663861654087 0.112472688049277 1 0.711647926179566 22.261308587652 -0.160250468347735 0.0746350102172287
AT1G59660_at 2.99588548708154 2.88481495382112 3.57151539582821 3.29229339910541 2.35988457837363 2.71275582949484 2.82617694074447 3.07494813568900 2.80863009417468 2.42834535437199 2.71816390142687 2.58496057802135 2.58744482621413 2.80645264867183 3.29655993362249 3.36467369018687 3.4679934489989 3.00609111146688 2.80046192741465 0.187478109484480 0.184273547175534 0.186338370395409 0.186930346241168 0.184230116548059 0.188883612744633 0.185895073440501 0.191163883859792 0.191936208931707 0.191466036566326 0.189868674922848 0.189634205255568 0.187137838613729 0.187109776622535 0.193387939959890 0.189584561469025 0.192243236639655 0.183692106928179 0.184050954003552 1 1 + 21932307 21932855 21932559.091 21928358 21933089 + gene protein_coding_gene FALSE TRUE AT1G59660.1 nucleoporin family protein similar to transporter [Arabidopsis thaliana] (TAIR:AT1G10390.2); similar to Os12g0166000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066246.1); similar to Nucleoporin autopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95896.1); similar to Nucleoporin autopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95894.2); contains InterPro domain Peptidase S59, nucleoporin; (InterPro:IPR007230) 0.169276323352774 1.72655503797771 0.112488153387605 1 0.71153543426967 5.79387849467391 0.169276323352774 0.0910318219646453
AT3G09090_at 6.48489285156455 6.87703302697236 6.09375558506196 6.49946295830093 6.65317209938145 6.33280765747588 6.51125549069123 6.94927474422368 6.08592974256803 5.95837242240299 5.86784745337748 6.224018075321 6.07776405852609 5.784478128571 6.33210161741435 6.16543773296635 5.89598117398683 6.16195651157051 6.4096317137846 0.280788771621244 0.281849155419689 0.283559392487919 0.288262435003193 0.286869021393619 0.291526507745585 0.286401780089538 0.279041279520987 0.304317327609932 0.277308431388133 0.279090544777812 0.276895685368511 0.283926436161553 0.273225378854452 0.287030164612907 0.275437180517769 0.299556584597386 0.291142394892367 0.271783352846968 3 3|0 -|/ 2782920 2783654 2783223.667 2782703 2787809 - gene protein_coding_gene FALSE TRUE AT3G09090.1 DEX1 (DEFECTIVE IN EXINE FORMATION 1) Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development. similar to hypothetical protein Tb927.7.6460 [Trypanosoma brucei TREU927] (GB:XP_826257.1); similar to Os03g0825700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051758.1); contains InterPro domain FG-GAP; (InterPro:IPR013517) -0.199213826129868 -1.72654513459334 0.112489986031983 1 0.711522105078948 12.6577114951516 -0.199213826129868 0.13547722621192
AT3G25545_at 6.54950866041289 6.54515015877333 6.90565948602079 6.51798003055577 7.14148269579266 5.86517317180415 7.24425000266006 7.00481330364156 4.86430231843218 5.73939565077065 5.16229465178271 5.10634057758942 5.51208210007132 4.90979125534003 4.75836378492131 5.26985390741685 5.28196170968729 4.69461448676901 5.6673028095691 0.277088583271943 0.267125444750181 0.275315957678778 0.265404737683722 0.276787547689431 0.279303061979361 0.284254692966154 0.272115862104155 0.277700130187576 0.276407503511291 0.268757646375169 0.265014407449789 0.264825641551749 0.268449155541651 0.265375523102956 0.264825641551749 0.269360186963102 0.270578371655508 0.270527811353320 3 3 + 9279080 9279512 9279307.455 9278082 9279866 + gene protein_coding_gene FALSE TRUE AT3G25545.1 similar to Os01g0219000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042416.1) -0.282555401194343 -1.72644687520660 0.112508170615968 1 0.711389857730756 11.9770420564349 -0.282555401194343 0.234526441860268
AT2G25240_at 1.25591910325780 1.48381121882175 1.29026252866983 1.25018794165408 1.49310077121071 1.82000311768614 1.37906459765212 1.2009288941903 1.01010121791782 1.20151501780549 1.32705594728407 1.32167729450189 1.67152195725827 1.33532806916261 1.05250615534667 1.59901144035689 1.95255240087252 0.960516155498978 1.43123559078685 0.196548175463522 0.199808273569012 0.197784465595535 0.197494822697905 0.196259035297645 0.197144508649107 0.201220029546619 0.203014858908895 0.204013389258150 0.202225175384719 0.202832432485094 0.198813512814338 0.201116076314448 0.198193286488738 0.203860482749692 0.196259035297645 0.196259035297645 0.196259035297645 0.196471181514479 2 2 - 10759033 10759517 10759263.818 10758847 10760206 - gene protein_coding_gene FALSE TRUE AT2G25240.1 serpin, putative / serine protease inhibitor, putative similar to serpin, putative / serine protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT2G26390.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) 0.160847435844943 1.72631497934247 0.112532584363741 1 0.711212345317684 2.70506233149548 0.160847435844943 0.0758560521913226
AT1G29470_at 10.2903640908515 10.4217869346552 10.0670697498138 10.0816793045414 10.1556573369173 10.2546189797834 10.5624450127787 10.8257375319017 10.8097564251711 10.9302984075906 11.3085462746028 11.2440885832538 10.8613184337889 10.9906866153281 11.1022255987254 10.9729863578892 10.2536013716721 11.0448540096942 10.9254657758631 0.0781619091304592 0.0771046541342286 0.0779387044183127 0.0787055243222792 0.0779545046034622 0.0788603678980122 0.0794233438306084 0.0767955857607645 0.0842889776539015 0.0767955857607645 0.0772839025119282 0.0767955857607645 0.0785722870760741 0.0767955857607645 0.0790262943538589 0.0767955857607645 0.0873716864120246 0.0777893996929992 0.0797474703180131 1 1|0 -|/ 10310412 10311160 10310647.125 10310231 10314034 - gene protein_coding_gene FALSE TRUE AT1G29470.1|AT1G29470.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G51070.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G34300.2); similar to dehydration-responsive protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96619.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22395.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.150772756852563 -1.72612448632949 0.112567852776485 1 0.710955982483959 21.2628175052358 -0.150772756852563 0.0537868150083765
AT2G44420_at 5.10217793054239 5.15120257541342 4.63912098491227 4.69610721872779 5.12769623899503 4.41687802783885 4.14635222549428 3.67809751652661 4.77426942230847 3.86964906997842 3.55938429724287 3.23622242410916 3.09440081880702 3.62316663682102 3.45683917891745 3.44154484636974 4.11013011786964 3.88861322024421 3.86301643476778 0.236796514086101 0.232321893830177 0.246346719203137 0.233394217847191 0.234151188800933 0.250137650090795 0.237247912055605 0.237276686536780 0.239269522469568 0.232321893830177 0.236856157930993 0.23898919956309 0.240900409023927 0.233939383173396 0.238563380306637 0.232321893830177 0.246189311997475 0.232321893830177 0.24085012258931 2 2|0 +|/ 18338716 18339708 18339140.7 18337549 18339985 + gene protein_coding_gene FALSE TRUE AT2G44420.1 protein N-terminal asparagine amidohydrolase family protein similar to protein N-terminal aspara (GB:BAD35425.1); contains domain FAMILY NOT NAMED (PTHR12498); contains domain SUBFAMILY NOT NAMED (PTHR12498:SF2) -0.208598780423135 -1.72609852836613 0.112572659476545 1 0.710921049783106 8.47983709058926 -0.208598780423135 0.147875777126683
AT2G33820_at 5.80789513904044 5.33158780339851 5.3253607825108 5.03620061843826 5.62637629951312 5.87185079976993 5.87497789104231 5.57782987595659 4.91684152572103 5.5221043248595 4.9643044289257 5.55955208197166 4.9880065072117 4.89836085517836 5.25287750618993 5.54984663621484 5.6092954218846 4.86240160791778 5.7595103827279 0.225522738177806 0.216138903024582 0.217822494899758 0.218097668114352 0.216047547306588 0.217441121086073 0.239289334837974 0.231196656185206 0.244642463624589 0.217657189015593 0.219161146207422 0.218039240001363 0.216047547306588 0.226005290266614 0.219999171580089 0.216047547306588 0.230625648596630 0.222628484120083 0.217443235045266 2 2 - 14313454 14314091 14313862.444 14313369 14315369 - gene protein_coding_gene FALSE TRUE AT2G33820.1 mitochondrial substrate carrier family protein (BAC1) encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol similar to BOU (A BOUT DE SOUFFLE), binding [Arabidopsis thaliana] (TAIR:AT5G46800.1); similar to mitochondrial amino acid carrier [Lycopersicon esculentum] (GB:ABH07903.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.186015166358711 -1.72564356900358 0.112656935401794 1 0.710308837536518 10.8615429221036 -0.186015166358711 0.117248455742457
AT3G01080_at 4.53377331072803 4.41680915815335 5.66487790548495 6.01974102193171 3.68345436628181 4.12646143736908 3.00745275248201 3.46215288073343 4.5814532913425 3.73402541860188 3.48584524611250 3.06025486758845 3.69106718394754 3.71224394112034 2.66438147356286 3.20918827641862 3.44137361298136 4.64057525001487 4.04553099401453 0.294196209725387 0.303980739312667 0.301589573255012 0.308312109586601 0.293061107780781 0.296310679904331 0.293061107780781 0.300959554865647 0.293061107780781 0.294660651669835 0.296480553243405 0.295331076972398 0.29461376638711 0.297442653974876 0.304640720527265 0.293061107780781 0.298558647888352 0.293061107780781 0.293061107780781 3 3|0 +|/ 26657 27396 27122.8 25514 27456 + gene protein_coding_gene FALSE TRUE AT3G01080.1 WRKY58 (WRKY DNA-binding protein 58); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 58 (WRKY DNA-binding protein 58) (WRKY58) [Arabidopsis Thaliana] (GB:Q93WU7;GB:Q9MAC2); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.2); similar to SPF1-like DNA-binding protein [Cucumis sativus] (GB:AAC37515.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.193183160362349 1.72513707428173 0.112750824400156 1 0.709627378055171 8.16856675387286 0.193183160362349 0.127476335985867
AT3G20220_at 1.53750565371606 1.5137747071531 2.06467936095249 1.66255661349941 1.51410553720880 1.91016059072295 1.72703421490214 1.27239219926876 1.86969249778119 1.45342188136625 1.68788218660661 1.59138744356302 2.15152129218590 1.74332213530119 1.95946545428126 1.84912723148839 2.19545715591361 1.58382270922160 1.88772884745541 0.164706945752115 0.160153785846478 0.160047640021473 0.169570232467874 0.163845661960491 0.167879908772763 0.163197480736677 0.159950513207768 0.160605586419954 0.160953981953686 0.161483642152587 0.164689907461825 0.162169922609869 0.161211827753712 0.163085591175003 0.16171257449423 0.159981925908882 0.171095244463115 0.162123664406058 3 3 + 7055068 7055342 7055199.545 7054834 7055462 + gene protein_coding_gene FALSE TRUE AT3G20220.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G75580.1); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G34760.1); similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G38840.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13234.1); similar to Os02g0143300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045868.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.191749645352573 1.72509813302222 0.112758045859367 1 0.709574989234972 3.44137408131354 0.191749645352573 0.125488478272872
AT2G17845_at 0.991969801325315 0.886266668143827 0.916209486410011 0.815960129665434 1.13130392292593 0.911069751807184 1.36160939189579 0.927473696748983 1.70845732066692 1.36716122464838 1.08119940091312 1.1616403095657 1.43019342917685 1.24756114405758 1.11410934548925 0.991819665754632 1.58996095022182 1.20240669044018 1.31548644773640 0.206917464696417 0.204647674326118 0.203031765442917 0.216931273987228 0.214859665269583 0.199324934444079 0.204508816900859 0.211452214818491 0.204013332705399 0.207738163455947 0.199893667890070 0.201705845252604 0.217258684866936 0.205464194879859 0.20319135727807 0.199324934444079 0.201601890228779 0.203866087036441 0.201126165764963 2 2 + 7766520 7766916 7766716 7765928 7766963 + gene protein_coding_gene FALSE TRUE AT2G17845.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G55290.1); similar to putative short-chain type alcohol dehydrogenase [Solanum tuberosum] (GB:AAN32641.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.167267182112259 -1.72443598053154 0.112880902367396 1 0.708684272295414 2.33826437176679 -0.167267182112259 0.0879349271855048
AT1G75980_at 5.18274872907097 5.04834347173928 4.91129754736433 4.47439818945317 5.99768042263064 4.5346110840006 6.50005497807327 5.3412807584319 4.61553365742428 4.56099248796942 4.27454781989225 4.42429974345203 4.37462020600747 4.61056304480424 4.54257595898156 4.45989531407786 4.56413886703043 4.16528284804953 4.73639368499275 0.244581113922059 0.233888233542552 0.243562091191165 0.243925711583970 0.242985884338184 0.243116350019430 0.243408588237487 0.234954398777478 0.264238155250198 0.232615598598345 0.237619962501380 0.236881279648647 0.237513966311828 0.232692129204833 0.241797095869597 0.241597156942269 0.248930200316227 0.249139787441082 0.232615598598345 1 1|0 -|/ 28527032 28527763 28527437.8 28526215 28527998 - gene protein_coding_gene FALSE TRUE AT1G75980.1 similar to Os02g0120400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045709.1); similar to ENSANGP00000021928 [Anopheles gambiae str. PEST] (GB:XP_312490.2); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.374629820820950 -1.72410307299057 0.112942715863689 1 0.70823651910671 9.78111710697005 -0.374629820820950 0.332529631921688
AT3G43240_at 6.3545630612503 6.18142104961057 6.3896011535674 6.23231801256234 6.51352756087728 6.00352694764651 5.8829486201802 5.55391785715936 5.88235493363794 5.90608381970185 5.85717141319141 6.10467404083317 6.19702192826897 5.96088665741383 6.035980955344 6.02857374744752 6.35321465671197 6.10218625928915 6.23013556333254 0.193244593352085 0.187358470188709 0.19295886377055 0.191457546147081 0.194124069002959 0.198350474004134 0.190808017591153 0.193229404905796 0.193227772150703 0.187346105802112 0.188810210818759 0.193186808485131 0.186841713807407 0.202637140301024 0.191179102984099 0.185323518990681 0.185790417280358 0.194293763896574 0.18711089913418 3 3|0 -|/ 15221020 15221841 15221429 15220924 15225730 - gene protein_coding_gene FALSE TRUE AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein similar to Os08g0451400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061946.1); similar to fiber protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08741.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606) 0.182651520017502 1.72406280155933 0.112950195432462 1 0.708182358051760 12.1820556059584 0.182651520017502 0.112562449428689
AT2G37510_at 1.61447801120016 1.50461169049536 1.51913097265473 1.64345166479074 1.67669962626647 1.67635081797733 1.60219635007776 1.53707666166879 1.22424995094263 1.46351544049128 1.78396526464363 1.69700159185865 1.86326990116068 1.78629858348505 1.61272207786895 1.37748706901278 1.47185445633479 1.40402140391267 1.51884844024563 0.178239306430916 0.177190527381373 0.182366800469375 0.182440039706487 0.186846766849110 0.183467537216724 0.180189013727535 0.185703114542067 0.177190527381373 0.182490945476721 0.182484414380841 0.180003871424856 0.178580191080301 0.180927760733994 0.179744077102642 0.181691901753337 0.179316484097950 0.185815385672528 0.179693588688474 2 2|0 -|/ 15750217 15750552 15750372.3 15750070 15751619 - gene protein_coding_gene FALSE TRUE AT2G37510.1 RNA-binding protein, putative similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G54580.1); similar to RNA-binding re (GB:ABE82094.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.143345262518301 1.72369914736086 0.113017756700420 1 0.707693309943759 3.11014055143866 0.143345262518301 0.0308440208805669
AT2G34180_at 0.87046118330502 1.15545284519198 0.690258231496484 1.06905138563729 1.03625057611261 0.934778279440731 0.862002117998062 1.11822737155093 1.37471540034796 1.3065018944256 1.27107131205760 0.879894253047105 1.09446554854412 0.85128866366675 1.15698375184616 1.02546212548940 1.08933257886455 0.945597672397889 1.2570925358189 0.222744091000777 0.224531370832194 0.229889670060994 0.222744091000777 0.222744091000777 0.225798980377745 0.223409306063426 0.224506692681938 0.224287099849051 0.225747953239036 0.224230062230418 0.225575248206606 0.227194521264215 0.231837343289424 0.225887053847046 0.224086381736774 0.231520787608326 0.227233256826977 0.228032715558822 2 2 - 14437845 14438305 14438137 14437840 14439348 - gene protein_coding_gene FALSE TRUE AT2G34180.1 CIPK13 (CIPK13); kinase Encodes CBL-interacting protein kinase 13 (CIPK13). similar to CIPK12 (CIPK12), kinase [Arabidopsis thaliana] (TAIR:AT4G18700.1); similar to CIPK18 (CIPK18), kinase [Arabidopsis thaliana] (TAIR:AT1G29230.1); similar to putative serine-threonine kinase [Gossypium hirsutum] (GB:AAT64036.1); similar to CBL-interacting protein kinase 19 [Populus trichocarpa] (GB:ABJ91226.1); similar to CBL-interacting protein kinase 17 [Populus trichocarpa] (GB:ABJ91224.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.171229608315673 -1.72301073069723 0.113145753264885 1 0.706767666349376 2.14307621472665 -0.171229608315673 0.0948889681193516
AT3G57880_at 4.52478801413646 4.74830605736977 3.96674240763755 4.448379457495 3.82445929664666 4.53092199421402 3.93174630574668 4.1968637719283 4.09426005464919 4.40603524923587 4.04321787993094 4.32593109362321 3.54750613597521 3.98388305073924 3.59863181911413 4.84541295454506 3.45821303652329 3.75400142886943 4.16477009519967 0.21563312988825 0.219610801424614 0.231241074972823 0.223197789787711 0.21563312988825 0.230784796598889 0.222623071133192 0.221669830155474 0.241970272956282 0.227343121940845 0.21563312988825 0.21563312988825 0.224744131412473 0.225789994435793 0.229024095616974 0.21563312988825 0.227334050860328 0.22712525026098 0.216854325673455 3 3 - 21442189 21442679 21442384.455 21441962 21445577 - gene protein_coding_gene FALSE TRUE AT3G57880.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51570.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12970.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.217444519871753 -1.72237474837857 0.113264116564055 1 0.705912700862562 8.35466998378513 -0.217444519871753 0.159671544700395
AT1G21160_at 4.53253668732621 3.58973370491382 4.28284195395027 3.71951354506112 4.53659128439731 3.97111055523444 4.07677739271987 3.77366991372537 3.85755348741785 3.91057041342684 4.44818229175459 4.77179815435579 4.12698578461301 4.84169891300182 4.12174663773956 4.67391382067225 4.17221409335545 3.28506065818525 3.93720255406171 0.201178163085811 0.187264800967274 0.187650513021686 0.187264800967274 0.189113554712472 0.194888724020026 0.187264800967274 0.195702961538641 0.194602771454135 0.193923329491492 0.187264800967274 0.190314117901253 0.187264800967274 0.187832733037996 0.199809145391089 0.187264800967274 0.191937039982868 0.198845263112348 0.188022873384119 1 1 - 7408291 7408873 7408579.182 7407944 7412846 - gene protein_coding_gene FALSE TRUE AT1G21160.1 translation initiation factor similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76810.1); similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76825.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to hypothetical protein AN4038.2 [Asper (GB:XP_661642.1); similar to translation initiation factor [Pisum sativum] (GB:AAN32916.1); similar to putative translation initiation factor IF-2 [Oryza sativa (japonica cultivar-group)] (GB:AAT44302.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.268879734615188 1.72212725712050 0.113310207484762 1 0.705580038192654 8.16383464425531 0.268879734615188 0.220117026320297
AT4G37410_at 2.70615796508889 2.37341765945066 2.60126281595388 2.31430752987418 2.02598674512966 2.26471383080181 2.33666448399327 2.59190178419636 2.67492884629441 2.8221410079987 2.84868573728583 2.13300044847389 2.69436757471675 2.22416531362674 2.33567185170247 2.53409716686783 3.02739496082865 2.38533370982389 2.50506384202828 0.178557974405770 0.174979640115161 0.181728298569873 0.188402385920840 0.178816422717449 0.182770817151539 0.173990475084587 0.174663498902771 0.186232347134630 0.173990475084587 0.174813520284699 0.174682108341861 0.175504667637751 0.174229289888447 0.181969204480131 0.179257769265517 0.1823814275885 0.178597018212359 0.1764616012317 4 4 + 17592195 17592739 17592548.091 17590766 17592914 + gene protein_coding_gene FALSE TRUE AT4G37410.1 CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4); oxygen binding member of CYP81F similar to CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37430.1); similar to CYP81F2 (cytochrome P450, family 81, subfamily F, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G57220.1); similar to CYP81F3 (cytochrome P450, family 81, subfamily F, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37400.1); similar to Cytochrome P450 81E1 (Isoflavone 2'-hydroxylase) (P450 91A4) (CYP GE-3) (GB:P93147); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.172503023050226 -1.72192253687533 0.113348345792026 1 0.705304884964973 4.99691034890586 -0.172503023050226 0.0971569244859544
AT1G33050_at 8.77487904173425 8.6999173149748 8.90771860880987 8.88861292347045 9.78022015528575 9.4769227939492 8.36177156503974 7.81779073410083 8.60858239680645 8.25366479114158 8.1914769568795 7.74038358611603 8.13582080520207 8.07209370295558 7.55868522753608 8.09629611107277 8.28074017563689 7.87026118384834 8.58806153031624 0.13778132860584 0.141306653939780 0.135917665383242 0.137478891644992 0.144321738565815 0.148456536762601 0.132704039537279 0.138619335158957 0.142866059803008 0.137129900037522 0.140549655907860 0.136442500701221 0.137237080266324 0.134663504072915 0.142519443456764 0.139051480684973 0.135624353554748 0.144743881885744 0.134053038253042 1 1|0 -|/ 11968356 11969217 11968865.7 11967807 11971001 - gene protein_coding_gene FALSE TRUE AT1G33050.1|AT1G33050.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10470.1); similar to Subtilisin-like serine protease [Pediococcus pentosaceus ATCC 25745] (GB:YP_803612.1) 0.179781217825444 1.72179712781852 0.113371714539876 1 0.70513633815743 17.0768071212093 0.179781217825444 0.108610066788644
AT2G21530_at 9.99920930635205 10.6367437166753 10.1358293944765 10.0122670684548 10.6263788710664 9.94667699072436 11.0588569998716 10.8036980128328 10.5886651350318 10.8716393063621 10.9254323230128 10.8569024126934 10.6470567625762 10.7596587690924 10.7552751914762 10.5833251173703 10.0136460477725 10.5522877464484 10.4638140916922 0.224524832925137 0.240170370756701 0.235991568517164 0.245633593653149 0.224524832925137 0.239941390822248 0.232552512605024 0.259650419086535 0.252023511506033 0.224524832925137 0.224524832925137 0.224524832925137 0.224524832925137 0.252557921183909 0.224524832925137 0.224524832925137 0.252296349257847 0.237768294682513 0.224524832925137 2 2 + 9226682 9227483 9227055.286 9226404 9227670 + gene protein_coding_gene FALSE TRUE AT2G21530.1 forkhead-associated domain-containing protein / FHA domain-containing protein similar to Os11g0127800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065631.1); similar to Os12g0124000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066037.1); similar to FHA domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95708.2); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) -0.224506862904597 -1.72129403216204 0.113465505019034 1 0.704460255280263 21.0414929903904 -0.224506862904597 0.168567903811227
AT4G24470_at 8.79330411900002 9.02273798527298 9.16070182067816 9.20813390331433 9.02447693829951 9.14942570143457 8.64286332401036 8.67201768376546 8.28873483049129 8.17116069071519 8.31458634828162 8.02258289998615 8.00738668366006 7.791563949069 8.1536793787533 8.31493154061723 8.58618212807764 8.05203953852145 8.17968087317895 0.140316123811686 0.137188638061880 0.141993034588135 0.137188638061880 0.139324962533485 0.140842461347342 0.137188638061880 0.145060111713430 0.137288558976736 0.145024667905943 0.144376483429212 0.142962069774104 0.145036389608452 0.152060144442811 0.140734185524864 0.138840350348681 0.144444745583254 0.142362823346281 0.139465619896631 4 4|0 +|/ 12646297 12647693 12646988.6 12645552 12647975 + gene protein_coding_gene FALSE TRUE AT4G24470.1|AT4G24470.2 ZIM (ZINC-FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM); transcription factor ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif. Identical to GATA transcription factor 26 (Protein ZIM) (ZIM) [Arabidopsis Thaliana] (GB:Q9LRH6;GB:Q9STU8); similar to ZML2 (ZIM-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51600.2); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53990.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain ZIM; (InterPro:IPR010399); contains InterPro domain CCT; (InterPro:IPR010402) 0.147565369914218 1.7210481737207 0.113511364967126 1 0.704129897824659 17.1434882793882 0.147565369914218 0.0462259656840819
AT1G19530_at 1.60943849676893 2.11597995312127 2.11911482387274 2.45872800166288 2.13566092690714 2.38240279541135 1.45691197393376 1.71322237430759 2.07114803406976 1.60051737469896 1.96754520482848 1.07724502697329 1.35985859175575 1.90511710622293 1.47852968641114 1.56389225051491 1.5090490289842 1.90693131603441 1.6329675250659 0.216861390856025 0.214638587881803 0.220133655247162 0.212815708193784 0.218940648843894 0.221750713342293 0.225527600906918 0.211672438153679 0.225476371459616 0.226519421919156 0.221784574412444 0.213802908466774 0.215446208343712 0.21433727939106 0.222954572695125 0.21100748696887 0.226742560557389 0.215577425351601 0.214094184092720 1 1 + 6763978 6764652 6764399.182 6763906 6764962 + gene protein_coding_gene FALSE TRUE AT1G19530.1 unknown protein 0.188949242975704 1.72098624885476 0.113522918431567 1 0.704046693988164 3.68104842045346 0.188949242975704 0.122184182374691
AT1G24240_at 2.42981623711704 2.89168012580426 2.62416767408678 2.6297966725469 2.86169451159538 2.28563945925219 2.50778287423862 2.57341737415287 2.51478364690035 2.37729120493218 3.00415746692007 3.37091171275065 2.92769354956984 2.96501375952916 3.08986601962843 2.67806569980227 1.65937299305099 3.17407126051442 2.52324506714615 0.206927540267392 0.207744692118859 0.206586457443290 0.214124916484550 0.215759814624173 0.205188677269287 0.202719617325303 0.204445082814164 0.202517177593996 0.212011756076298 0.201510064097319 0.205293742674329 0.200615666475416 0.207341661381307 0.206225702054190 0.201287661891866 0.207735371342742 0.206532825859560 0.209529238295031 1 1|0 +|/ 8586514 8587929 8587005.556 8586342 8588085 + gene protein_coding_gene FALSE TRUE AT1G24240.1 ribosomal protein L19 family protein similar to ribosomal protein L19 family protein [Arabidopsis thaliana] (TAIR:AT4G11630.1); similar to plastid ribosomal protein L19, putative [Brassica oleracea] (GB:ABD65070.1); similar to Os02g0205000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046245.1); contains InterPro domain Ribosomal protein L19; (InterPro:IPR001857) 0.193260588968310 1.72063885273191 0.113587752520556 1 0.703579953268604 5.26570804812273 0.193260588968310 0.128282102406523
AT3G48140_at 12.0678805292081 12.2576481515899 12.3139774642414 12.4468115189095 11.9733223542012 11.9996198682073 11.6901185993559 12.0698281929698 12.4560629144421 11.9983820781787 12.5422436168449 12.4059313334693 12.2938114185487 12.3873860337410 12.2376016095594 12.3697562495710 12.1429851798291 12.2198803273662 12.0410210345371 0.0623479815174536 0.0617468421808506 0.0658944801795368 0.0643005132536295 0.0655752989740525 0.0657991317049409 0.0629181848208723 0.0617468421808506 0.073989064225454 0.0645272758278347 0.0659323949841051 0.0617468421808506 0.0632497610564108 0.0638510394031125 0.0672082816988499 0.0617468421808506 0.066647536907201 0.0677560331415663 0.0642344181760952 3 3|0 +|/ 17789457 17790260 17789981.5 17789341 17790534 + gene protein_coding_gene FALSE TRUE AT3G48140.1 senescence-associated protein, putative similar to germination protein-related [Arabidopsis thaliana] (TAIR:AT3G29970.1); similar to HvB12D [Hordeum vulgare subsp. vulgare] (GB:CAA54065.1); contains InterPro domain B12D; (InterPro:IPR010530) 0.160929030919597 1.72023567325413 0.113663039102489 1 0.703038328396531 24.3474532415865 0.160929030919597 0.0771069851674151
AT2G43600_at 1.82345971622153 2.37820647377359 2.62138422161968 2.81153092419801 1.73106576603008 2.04517647498122 1.91073802187789 2.48225835919949 2.01463353080533 2.56662098673677 1.89757544610316 1.80662326394100 2.08484778386954 1.56841798197875 1.69285943448973 1.65687942597961 1.98395057919618 2.50651799769838 2.8438152119792 0.194549709083427 0.19536532778366 0.206244195195316 0.205978003780004 0.200616963599857 0.199145192407341 0.194953172996931 0.204999389729524 0.206878356391657 0.194105500294243 0.200408706451094 0.194105500294243 0.200974162622195 0.205131964899768 0.219310090665498 0.194941208756228 0.196139462793930 0.211474339277545 0.205750190884837 2 2 - 18093133 18093831 18093459.545 18093126 18094095 - gene protein_coding_gene FALSE TRUE AT2G43600.1 glycoside hydrolase family 19 protein similar to glycoside hydrolase family 19 protein [Arabidopsis thaliana] (TAIR:AT1G56680.1); similar to chitinase [Brassica rapa subsp. pekinensis] (GB:BAF35569.1); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.210845275038799 -1.71957833774943 0.113785880945947 1 0.702155419664976 4.41284361090309 -0.210845275038799 0.151776020731312
AT4G39450_at 6.66852223503617 6.95506717335760 6.72504096616103 7.13949724007634 6.99489294417528 6.59866724684835 6.7994866419915 6.92137964529656 5.75142438508493 6.44371988976165 6.9244189068618 6.45880231089255 6.4301243097988 6.24307757011594 6.62824569966455 6.56904501944936 6.46322392876826 6.01066634772543 6.19350206232201 0.187610282384573 0.184114882197079 0.193584110028402 0.189481250553545 0.194221531276458 0.208683763738105 0.190234410445979 0.184114882197079 0.209722037196931 0.187493397494677 0.188776427923181 0.184114882197079 0.190104658300641 0.197720143105876 0.197402903893287 0.190175228905406 0.198829218998371 0.200378383103682 0.184458301592216 4 4 + 18354128 18354670 18354335.818 18347587 18355050 + gene protein_coding_gene FALSE TRUE AT4G39450.1 similar to Os01g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042222.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67785.1); contains domain gb def: Hypothetical protein AT4g39450 (PTHR13650:SF3); contains domain FAMILY NOT NAMED (PTHR13650) 0.182406203999093 1.71950828198285 0.113798979891032 1 0.702061333975758 13.1480689069757 0.182406203999093 0.112915311987995
AT1G13940_at 5.69782378392021 6.31107288620597 5.48349089800842 5.71606289131036 5.85795365487717 6.56886155550199 6.12199694575346 5.98009786919843 6.56869651359934 5.96199668474335 5.7280321449773 5.94991235067127 6.09056347455509 5.58311140553673 5.58807063655517 6.18857205884347 5.88318920180575 5.80105985905988 6.00903891892527 0.244426319248081 0.236478800092172 0.242688729340887 0.237872780797072 0.243363081727102 0.257348359382635 0.238675200029484 0.24405964732246 0.254282961297503 0.250433304599397 0.239518067451212 0.244890989520117 0.240269939510956 0.240000422255357 0.239080506264081 0.242310080854278 0.241305156435302 0.248753276544792 0.236388559323711 1 1 - 4762713 4763236 4762969.091 4762700 4766746 - gene protein_coding_gene FALSE TRUE AT1G13940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69360.1); similar to Os03g0758600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051334.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK16179.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98981.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) -0.224751217800221 -1.71934912008635 0.113828744831742 1 0.70184758535231 11.9829073592253 -0.224751217800221 0.169177161695725
AT2G26050_at 1.52938825120173 1.64640238522312 1.89442288739404 2.26504156478092 1.06699162563151 1.53626730182966 1.33681763188361 1.91890868941238 2.27468227446519 1.94846783698262 1.51360175669547 1.53713681572803 1.61037439872502 1.45357308985334 1.39046689526979 1.53826685709371 1.11549802410923 2.19312598190391 1.89440411640199 0.219137609816233 0.216411687817720 0.220185096463132 0.220824355693787 0.21481522278215 0.228477518520762 0.21481522278215 0.221650759827172 0.217999926823057 0.226577856627407 0.217590211577887 0.220776327741194 0.228388599313507 0.218139211691201 0.220288757436503 0.219788484887707 0.223304996950903 0.22395796747072 0.222270361329087 2 2 - 11105773 11106257 11105978.182 11105730 11106458 - gene protein_coding_gene FALSE TRUE AT2G26050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80220.1); similar to Os01g0612600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043557.1); similar to Os02g0770600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048251.1); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) -0.206188829857732 -1.71921503645509 0.113853825302600 1 0.701667524126425 3.44087515218908 -0.206188829857732 0.145828737735525
AT1G10470_at 9.99319152913507 10.1574826515336 9.93278252730777 10.0376591381390 10.4191635236080 9.98231223462154 10.1255872056693 9.9477811097165 9.6611401619016 9.9389453408981 10.5137389487780 10.2226647984504 10.1446927657542 9.9298546323464 10.1960763563939 10.6267121904175 10.0890840697828 10.1182470848049 10.1995000402237 0.104164422968008 0.0977499954520738 0.103453548590902 0.101012269513659 0.0998461703486086 0.105242683813612 0.0985286269749242 0.0978035551396293 0.104030795704605 0.102810252409253 0.101246483852663 0.0974298150598623 0.102590709654704 0.0998655968555557 0.102587685840738 0.100826976995116 0.108070059563755 0.110775505353277 0.104655004455561 1 1|0 -|/ 3442650 3443466 3442974.8 3442328 3443958 - gene protein_coding_gene FALSE TRUE AT1G10470.1 ARR4 (RESPONSE REGULATOR 4); transcription regulator/ two-component response regulator Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. Identical to Two-component response regulator ARR4 (Response regulator 1) (ARR4) [Arabidopsis Thaliana] (GB:O82798); similar to ARR3 (RESPONSE REGULATOR 3), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT1G59940.1); similar to response regulator protein [Dianthus caryophyllus] (GB:AAK14395.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.166953703369326 1.71894816457317 0.113903758717747 1 0.701309163569166 20.1561595083907 0.166953703369326 0.0883163470458898
AT1G53980_at 2.15810614712027 1.98022900626876 2.39286065342084 2.41945358068165 1.82467024058648 2.04403269073443 1.81589673084837 1.87985496420740 2.59558495185912 2.03893134393947 2.30315096688540 2.24059699709679 2.52782901162840 2.22617229751287 2.38467337489527 2.25790631448822 2.43863579729989 2.36771440272088 2.13777191533897 0.191474295470848 0.191875680057857 0.188575061394573 0.192317304033824 0.187408206904311 0.188196753913541 0.187288487654976 0.191216672664283 0.189548148992188 0.193272920568337 0.194406285854853 0.190009563426890 0.186400420588041 0.187790950267008 0.196229078024726 0.186400420588041 0.199474414584522 0.186826383152422 0.188953206874861 1 1 - 20153016 20153225 20153115.273 20153002 20153277 - gene protein_coding_gene FALSE TRUE AT1G53980.1 polyubiquitin-related similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT1G53950.1); similar to polyubiquitin [Lilium lon (GB:AAF21992.1); contains domain UBIQUITIN 4 (PTHR10666:SF6); contains domain no description (G3D.3.10.20.90); contains domain Ubiquitin-like (SSF54236); contains domain UBIQUITIN (PTHR10666) 0.148819035424048 1.71875747600806 0.113939449803844 1 0.70105312160313 4.36477015124777 0.148819035424048 0.0503223208174367
AT1G35260_at 2.12466893256008 2.23293589325865 1.60682461539626 1.72431034373690 1.10163223924822 1.70867072823543 1.64417935493081 1.59910151793762 1.17934143655582 1.21246729916431 1.9218977590246 1.90105735950241 2.29284481899124 2.29032261899424 1.72225027989117 1.6561571600561 2.11008783336249 2.38433385766167 1.54046522270779 0.166146984712387 0.162714406318831 0.171093289401502 0.164694919139981 0.166118390780667 0.167819528232851 0.167534153304841 0.167438147142411 0.169260279078858 0.173009791356799 0.167962611539586 0.164970628260881 0.169366447890719 0.163222180424467 0.165833084810400 0.16876216187925 0.168301052267101 0.163613956274110 0.162714406318831 1 1 - 12937043 12937634 12937337.909 12936827 12937765 - gene protein_coding_gene FALSE TRUE AT1G35260.1 Bet v I allergen family protein Identical to MLP-like protein 165 (MLP165) [Arabidopsis Thaliana] (GB:Q9C7I7); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G35310.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.179624515887631 1.71842017421081 0.114002607022201 1 0.700600255819551 3.39060392670206 0.179624515887631 0.108907958211003
AT3G60570_at 1.70759248431362 1.96502290991623 2.13867570638588 2.04721942056523 1.89283365046584 2.00272353751237 2.17999350980086 2.33234896114740 2.14514308105502 2.32643363787199 1.51538780309083 1.84026801757995 2.63317116077244 1.99989029589643 2.29144362276853 1.82803611074781 2.04937275525559 1.87711257783022 2.37275862989871 0.208053410917397 0.204152346887426 0.204152346887426 0.205132523269241 0.205927138405105 0.205598901105534 0.214230993852535 0.218673444992827 0.215216052976603 0.204345239621877 0.213171131394823 0.208724752862798 0.204152346887426 0.217950385177065 0.212736404361271 0.205118490392792 0.208990767764373 0.208018436889531 0.209373133054874 3 3|0 +|/ 22402532 22403377 22403070 22402222 22403438 + gene protein_coding_gene FALSE TRUE AT3G60570.1 ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-B5 precursor (AtEXPB5) (At-EXPB5) (Beta-expansin-5) (Ath- ExpBeta-1.3) (EXPB5) [Arabidopsis Thaliana] (GB:Q9M203); similar to ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) [Arabidopsis thaliana] (TAIR:AT2G45110.1); similar to Expansin-B5 precursor (AtEXPB5) (At-EXPB5) (Beta-expansin-5) (Ath-ExpBeta-1.3) (GB:Q9M203); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) -0.151493105422354 -1.71793942035058 0.114092678913825 1 0.699954871553107 4.17619147714741 -0.151493105422354 0.0573755546752821
AT3G62800_at 6.03435644520014 6.40308400491785 5.98226253623202 6.2113026025159 6.4411930727833 6.42839911124313 6.29262827947949 6.19217323205077 6.00781120126886 5.25222425460644 4.99348772521785 5.12785208167439 5.27792314939413 5.17681164639672 5.14025274551411 5.5024714714528 5.37029455594271 5.57168248943078 5.62018112983696 0.226151684751944 0.224575133979984 0.226926652479373 0.226814311252252 0.228911713255961 0.230603004083273 0.236223061955157 0.223086291598108 0.236195011269663 0.24520283214395 0.224352404688129 0.228147334880421 0.228001866624056 0.240390555069690 0.237239321828949 0.226569437371310 0.237636678560576 0.243061903516834 0.235990437756407 3 3 - 23236727 23237555 23237063.727 23236567 23238487 - gene protein_coding_gene FALSE TRUE AT3G62800.1|AT3G62800.2 DRB4 (double-stranded RNA-binding domain (DsRBD)-containing protein 4); double-stranded RNA binding Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. similar to DRB3 (DSRNA-BINDING PROTEIN 3), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT3G26932.2); similar to Os10g0480500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064874.1); similar to double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] (GB:ABF69992.1); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.160706519247313 -1.7176986755867 0.114137807791831 1 0.699631721909054 11.6965928330688 -0.160706519247313 0.077135467846174
AT1G20850_at 4.76268555880715 4.81260026498168 4.09755382952497 4.54335368343493 5.01537737565014 4.78415108475992 6.12117134088334 5.497455084032 7.52154923942172 5.90435436119284 6.88482288821121 7.40845219604557 6.76202264098349 7.23167417403415 7.8517609692123 7.04628381643367 6.52613748225396 8.10817297981514 7.39498217256321 0.226926274852073 0.234062001760199 0.245188998904355 0.235086948217880 0.228264905327469 0.232802928400231 0.232143141876468 0.234182758886848 0.232900836014268 0.226761077769954 0.233024643907629 0.227800083517226 0.226761077769954 0.228379681553394 0.240956629502282 0.226809434238531 0.245250724785223 0.231156588680567 0.233718906266367 1 1|0 +|/ 7252769 7253488 7253122.333 7252163 7253718 + gene protein_coding_gene FALSE TRUE AT1G20850.1 XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G35350.1); similar to Peptidase C1A, papain [Medicago truncatula] (GB:ABE82593.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -0.200624216592895 -1.71700554807208 0.114267827753888 1 0.698701478041932 12.0381491033091 -0.200624216592895 0.138845128560834
AT1G30460_at 3.42938233692514 2.57497873802353 3.16321049501535 2.82529168721224 2.57722549178957 2.68652311908457 3.27229855780749 2.90575198771374 3.20068178686047 3.25570398723019 3.06506304278523 2.91992795132712 2.58583970196177 3.2581078891511 3.00371293649841 2.87116089805101 3.11306620897300 3.14614837402018 3.19347871935321 0.187131027476120 0.190379642677437 0.183924116282265 0.185123141564594 0.184198034271590 0.189313280812721 0.190623157008356 0.196436103605742 0.183924116282265 0.188303450402348 0.185799917233051 0.18853170552323 0.187459125642602 0.183924116282265 0.194762046129271 0.196860249804892 0.191108452798516 0.190410678460109 0.196346070563953 1 1 - 10771477 10771981 10771816 10771451 10775305 - gene protein_coding_gene FALSE TRUE AT1G30460.1|AT1G30460.2 ATCPSF30/CPSF30; RNA binding / calmodulin binding / nucleic acid binding|ATCPSF30/CPSF30 Polyadenylation factor subunit. Nucleus-localized RNA binding protein capable of interacting with itself and with calmodulin. Its RNA-binding activity is inhibited by calmodulin in a calcium-dependent fashion. similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:AT4G11970.2); similar to zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45526.1); similar to Os06g0677700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058359.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571)|similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G21570.1); similar to zinc finger (C3HC4-type RING finger) protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45526.1); similar to Os06g0677700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058359.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.226891664655345 -1.71658239240557 0.114347270568890 1 0.698133661164652 6.03533273827675 -0.226891664655345 0.172230430850644
AT4G15290_at 1.77365499809337 2.26662070699850 2.72970117349495 2.96131795780158 2.03915538300777 2.05763016579104 1.96038899910361 2.49092081465361 2.76331120707276 2.86832033063999 1.90735096416533 1.7896486564807 2.10957497999834 1.76010882919405 1.86669000691227 2.00988616571971 2.33770840356476 2.64384101511576 2.67101341684608 0.197343647016985 0.202420110818244 0.191592800457645 0.200371883719962 0.193218585067819 0.193667647109404 0.202300588798733 0.194399783904024 0.211927531992029 0.199178360839182 0.203389924323375 0.194563485813631 0.193519309271068 0.205728868329139 0.198018972126829 0.199058063857062 0.206207455665989 0.198438855432447 0.191592800457645 4 4 - 8721750 8722206 8721942.1 8721489 8726669 - gene protein_coding_gene FALSE TRUE AT4G15290.1 ATCSLB05 (Cellulose synthase-like B5); transferase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLB03 (Cellulose synthase-like B3), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G32530.1); similar to ATCSLB06 (Cellulose synthase-like B6), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15320.1); similar to ATCSLB02 (Cellulose synthase-like B2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G32620.1); similar to Cellulose synthase [Medicago truncatula] (GB:ABD32407.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.195196200115425 -1.71631266267147 0.114397935236996 1 0.697771759949175 4.69524849778312 -0.195196200115425 0.131620199868388
AT1G33750_at 1.85992877529790 1.74018399402915 2.01947133093174 1.65999324838301 1.53141736482558 1.22341832956336 1.56474955354813 1.80972075897754 2.09881152016374 1.52342870265355 1.86948473623768 1.19093836794319 1.75826586198018 1.44269964618621 1.29927971762285 1.3524622428189 1.77695318180159 1.62515175738826 1.61240968226449 0.183967636712489 0.185597423196777 0.186052565879648 0.185058560392337 0.193333021348106 0.188014380695229 0.186515224847209 0.185033417034478 0.187526685752384 0.187178142148144 0.189783785480569 0.184842577026921 0.194116680972932 0.193891142701984 0.190016457995448 0.191757968284805 0.188727838436167 0.187115927605383 0.184672445596076 1 1 + 12235654 12236260 12235929.636 12233749 12236456 + gene protein_coding_gene FALSE TRUE AT1G33750.1 terpene synthase/cyclase family protein similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G29410.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G32030.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT3G14490.1); similar to terpene synthase [Vitis vinifera] (GB:AAS66357.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.170274782366911 -1.71552186985422 0.114546589964382 1 0.696710914611227 3.31825428979019 -0.170274782366911 0.0945387985194044
AT1G03890_at 1.60367549646701 1.6800146926156 1.68891914128686 1.31588560316193 0.9785333157418 0.95295849709839 1.28002096214020 1.52072613961563 1.74431724774887 1.16737449625582 1.32455952712869 1.45543478537647 1.72729095401023 1.40920762723434 1.22490938756985 1.30075833315686 1.51879703147523 1.76993285179923 1.59226484125832 0.206180793869248 0.200282776962135 0.202676976257683 0.203879164117808 0.205420238349111 0.208156322897923 0.210251000118925 0.200952426870288 0.204416557979129 0.203695499711590 0.209621371472964 0.200487489255577 0.201707498701256 0.204958761137640 0.207177543307503 0.208302806365321 0.20768216647622 0.202058073298121 0.200282776962135 1 1 + 990252 990883 990506.091 989197 991019 + gene protein_coding_gene FALSE TRUE AT1G03890.1 cupin family protein similar to CRU2 (CRUCIFERIN 2), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT1G03880.1); similar to CRA1 (CRUCIFERINA), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G44120.3); similar to Cruciferin BnC1 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin BnC1 subunit alpha; Cruciferin BnC1 subunit beta] (GB:P33523); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) -0.160996366461421 -1.71551811776041 0.114547295703318 1 0.69670588181696 2.86143181800253 -0.160996366461421 0.0780809808210886
AT3G25165_at 0.825563876382136 1.21117299999174 1.05199593767549 1.52580099283227 1.21792683044893 0.95413778066844 1.25218913934659 1.33930540912156 1.97618476980831 1.15045497600292 0.947314189338725 0.80370020345924 1.19418193249359 1.13795409734875 1.34663492389477 1.00267346616287 1.12509823362289 1.23330181554290 1.36597371485735 0.184362960191133 0.184063049347718 0.180581022876099 0.180581022876099 0.183901239491162 0.180581022876099 0.187468203762325 0.188182753139058 0.186341469535611 0.19003151767502 0.187026381628358 0.186414598196571 0.189297680743042 0.185112916784649 0.185590283029298 0.188706137454440 0.195949541838185 0.181259573885011 0.180581022876099 3 3 - 9163629 9163786 9163705.545 9163347 9163900 - gene protein_coding_gene FALSE TRUE AT3G25165.1 RALFL25 (RALF-LIKE 25) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL26 (RALF-LIKE 26) [Arabidopsis thaliana] (TAIR:AT3G25170.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.184136466647057 -1.71528066933290 0.114591965801909 1 0.696387397224467 2.47045920978631 -0.184136466647057 0.116134963670226
AT1G18280_at 0.96578705871658 1.03260432665793 1.31348938887568 0.924739247933849 1.07595048085377 1.13844894687362 1.08635904565551 1.42984265039109 1.45831536482693 1.6045239113085 1.23250994423972 1.33478937722268 1.64541010445437 1.01220633894806 1.02204343276277 1.41363684276096 1.20765993992344 1.35117885947861 1.73239020505306 0.197358293194944 0.205657458469724 0.200279812856259 0.206877376573885 0.197650036027524 0.207097963171069 0.197678113105029 0.207231202592338 0.203245805029642 0.206392088676638 0.202395016972612 0.196236658687615 0.200898300953532 0.197864236826441 0.199757347129564 0.197606602394951 0.210559763400597 0.204417153829080 0.201758731519365 1 1 + 6294397 6295165 6294707.818 6294333 6295357 + gene protein_coding_gene FALSE TRUE AT1G18280.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G73560.1); similar to Os06g0711900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058554.1); similar to lipid transfer protein [Picea abies] (GB:BAA23548.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.168235863155025 -1.71518517899799 0.114609934376026 1 0.696259324703013 2.55882223426308 -0.168235863155025 0.0911586306264946
AT4G04190_at 2.96807457921587 2.92792004890232 3.22292586624695 3.24046750125641 2.53798494840704 2.88128872292255 2.70528239580458 2.39156302755625 2.89173341497236 3.33404106357336 1.93608159659016 2.08970411753222 2.35651114972276 2.88569706536524 2.4799021005606 2.58269443453946 2.63760527311741 2.54391896966869 2.73312828681995 0.203813713162869 0.208741046567013 0.208903525013171 0.205237604331849 0.206836569393199 0.206950372925025 0.205877253465812 0.204291089652863 0.22278221768588 0.204317756596229 0.209836981656156 0.207219658644649 0.202103117001560 0.205239634086831 0.205273886398541 0.202103117001560 0.204869906324851 0.208683833083929 0.203174685996920 4 4 + 2025197 2026266 2025494.556 2024576 2026458 + gene protein_coding_gene FALSE TRUE AT4G04190.1|AT4G04190.2 similar to OSJNBa0073L04.1 [Oryza sativa (japonica cultivar-group)] (GB:CAD40662.1); similar to Os04g0410300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052728.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72222.1) -0.162414918281506 -1.71503066239724 0.114639015378811 1 0.696052093701931 5.57209601637681 -0.162414918281506 0.0808366137175919
AT4G13750_at 2.9279517949799 2.93636126604687 3.19575359049431 3.17597780501920 2.59991290576623 3.25556222112179 3.35908659962438 3.63868636794600 2.44487087982948 2.47529685255395 2.60390785344543 2.56683890091020 2.52854438003542 2.11758812561801 2.54470217118677 2.76426566878375 2.86159075908429 2.22390125220914 3.31745167554302 0.205388559105561 0.201988773701651 0.203469015396384 0.206280141595394 0.201245558347004 0.218247675362689 0.206158036348936 0.212397789481505 0.209074017641528 0.203535370079774 0.206099548813515 0.203854527690538 0.208324374667414 0.204992319530997 0.211420961804398 0.204161283621307 0.201245558347004 0.206469337797325 0.206645147437796 4 4 + 7986975 7987506 7987227.636 7978944 7987616 + gene protein_coding_gene FALSE TRUE AT4G13750.1 ATP binding similar to ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G48770.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72367.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91506.1); similar to unknown [Glycine max] (GB:AAQ62582.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -0.189087811807629 -1.71442475376818 0.114753115154525 1 0.695239571756101 5.77230683131714 -0.189087811807629 0.123405553300186
AT4G02190_at 1.58025584274258 1.83077905271641 1.89909832894675 1.73282234477333 1.22132985234570 1.62835762881689 1.62554885533514 1.46744761673259 1.71059006415071 2.25537077352615 1.67545119110229 1.49314569524853 1.55139086333828 1.55089682139678 1.80978720324449 1.93274945127201 1.42140450973871 1.49108785091765 1.87507575372222 0.199306949454718 0.198352341284095 0.198649817315317 0.207804453233638 0.195118776011017 0.203369880436845 0.199072743837188 0.197901123348994 0.1942939536059 0.201494059034413 0.201719512539506 0.196904552983295 0.197994115412713 0.200049663424606 0.194867410632953 0.200061368763694 0.20800360000954 0.196468432086080 0.197231894973588 4 4 + 968802 969290 969065.182 967372 969351 + gene protein_coding_gene FALSE TRUE AT4G02190.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01910.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01760.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G11550.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.168439401005850 -1.71373511722827 0.114883105934588 1 0.69431495826579 3.40458063800886 -0.168439401005850 0.0917478958138089
AT1G09290_at 2.52730482015124 2.60303615976841 2.73077293622364 2.92174570636754 2.9513566969089 2.73020847724813 3.88190711834913 3.17547338374479 2.30666132854042 2.22422523499496 2.04069665809387 2.15512296090753 2.31962869668993 2.03942904054902 2.28514833263832 1.94994419248576 2.33268913645163 2.40904582723670 2.57820327828541 0.223615484467109 0.223615484467109 0.229549707837601 0.224254287272875 0.226902364386881 0.235623812514253 0.232283885525064 0.243537504473164 0.233667976380666 0.226338773735841 0.223615484467109 0.226055081877581 0.231126218480372 0.226584662586918 0.225740327861067 0.223615484467109 0.238912661592771 0.223615484467109 0.227032246855313 1 1|0 -|/ 3002226 3003005 3002663.5 3001519 3003764 - gene protein_coding_gene FALSE TRUE AT1G09290.1 similar to Os02g0672400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047705.1); contains domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain (SSF55424) -0.195821462312506 -1.71330495428053 0.114964255012069 1 0.693738328793558 5.22080552213115 -0.195821462312506 0.132943943765258
AT1G54180_at 2.59848415710583 2.95867487471007 2.44484802065428 2.91790930857058 2.14894532401427 2.62825070945182 2.68322983792835 2.72903002335534 2.54817570855895 2.63963577917816 2.49150815202802 2.27383336411792 2.42110969847440 2.58061012810601 2.68319258462577 2.35794398464607 2.52172881016746 2.53619383554876 2.81238473793067 0.174246445048249 0.181287622030638 0.175139828691646 0.186032268374628 0.173339664450627 0.181315026532520 0.179811834301422 0.187292353198775 0.173339664450627 0.183265868068897 0.175332758153494 0.177334036426737 0.184330624490629 0.186504466225994 0.178176355623374 0.173339664450627 0.177474894623838 0.178780950727340 0.173818316505161 1 1|0 +|/ 20231400 20232131 20231867 20231364 20232186 + gene protein_coding_gene FALSE TRUE AT1G54180.1 ATBRXL3/BRX-LIKE3 (BREVIS RADIX-LIKE 3) Belongs to five-member BRX gene family. AtBRXL3 spans two loci, At1g54180 and At1g54190, according to Briggs et al, 2006. Temporarily, both AGI loci carry BRXL3 gene symbol. The new, merged locus will appear in the next TAIR genome release. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. similar to ATBRXL2/BRX-LIKE2 [Arabidopsis thaliana] (TAIR:AT3G14000.2); similar to major intrinsic protein, putative [Solanum bulbocastanum] (GB:AAP45183.2); similar to Os08g0462700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061986.1); contains domain REGULATOR OF CHROMOSOME CONDENSATION-RELATED (PTHR22870:SF25); contains domain REGULATOR OF CHROMOSOME CONDENSATION (PTHR22870) -0.195416694055224 -1.71323609877184 0.114977249193496 1 0.693646035831398 5.21367010444227 -0.195416694055224 0.13240159389855
AT4G20420_at 0.894814164701604 0.78526361967752 0.624059723838244 0.166217922662242 0.69079196071279 0.814097387670262 0.842995282742243 1.14790685039101 0.955463091069288 0.887059665379402 0.535946005529374 1.00767195725548 1.01483673134422 0.533902373256392 1.07694962446901 0.866734223941562 0.585203865969654 1.02298754422791 0.654334254459024 0.21525026504809 0.211036794944226 0.212135063192763 0.209998427274935 0.218180358654525 0.226628845914319 0.211153558268572 0.217458828757863 0.215428281407449 0.223457563286212 0.217756336650416 0.2156528882133 0.214961210545601 0.211405017965959 0.213225851495880 0.209998427274935 0.221644046533293 0.222022990775046 0.218581480465447 4 4 + 11017065 11017433 11017254.909 11016981 11017634 + gene protein_coding_gene FALSE TRUE AT4G20420.1 tapetum-specific protein-related similar to tapetum-specific protein-related [Arabidopsis thaliana] (TAIR:AT5G44540.1); similar to putative tapetum-specific A3 [Brassica napus] (GB:ABA00707.1); contains InterPro domain Tapetum specific TAP35TAP44; (InterPro:IPR009891) -0.172854930105291 -1.71178261386529 0.115251853782825 1 0.691698269818435 1.57717571957537 -0.172854930105291 0.0993815627557425
AT2G34660_at 7.471981640451 7.55036617009025 8.25819937400005 8.1997381350744 8.21307413072625 7.71199709959174 8.67713614908926 8.75320757902568 7.1731576103951 8.06743163587526 6.99797214282721 7.01818316452063 7.46156687032473 7.75926353727038 6.48395275710308 7.97048505633295 7.35403727239428 7.72981322718283 7.74839679474317 0.181395907416754 0.169758304927416 0.170120226689175 0.175180801630374 0.174257160303080 0.175712224628905 0.181719905197748 0.170207511452019 0.179735232068408 0.168662852145962 0.179559918255033 0.16832076808596 0.167756909872941 0.168208258093649 0.170470363263406 0.169357789608681 0.172260466680057 0.182996566757947 0.170610980827739 2 2 + 14618663 14619397 14618964 14609779 14619644 + gene protein_coding_gene FALSE TRUE AT2G34660.1 ATMRP2 (MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. Identical to Multidrug resistance-associated protein 2 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 2) (ATP-energized glutathione S- conjugate pump 2) (MRP2) [Arabidopsis Thaliana] (GB:Q42093;GB:O22449;GB:O24526;GB:O48907;GB:O48908;GB:O64590); similar to ATMRP12 (Arabidopsis thaliana multidrug resistance-associated protein 12) [Arabidopsis thaliana] (TAIR:AT1G30420.1); similar to ATMRP13 (Arabidopsis thaliana multidrug resistance-associated protein 13) [Arabidopsis thaliana] (TAIR:AT1G30410.1); similar to ATMRP1 (Arabidopsis thaliana multidrug resistance-associated protein 1), xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT1G30400.2); similar to Multidrug resistance-associated protein 12 (Glutathione S-conjugate-transporting ATPase 12) (ATP-ener (GB:Q9C8H1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59448.1); similar to H0714H04.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66978.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.166753396662966 -1.71092384646643 0.115414375789782 1 0.690547882164196 15.6094148350056 -0.166753396662966 0.0893248606745157
AT2G22410_at 1.71163684364485 1.90562064386740 1.28603948831771 1.50260549320922 1.66669537440131 1.24099913006913 1.67902430395832 1.73578402885697 1.97703084684963 1.55907655590681 1.93886203881107 1.43627020659434 1.5852229030492 1.92346150364589 1.71787496403757 1.71448331082354 1.95694817306321 1.73987824666642 1.71893054901142 0.175803780374707 0.180863951430576 0.176668585662589 0.175112100197009 0.176499313011956 0.178745213754345 0.176770054612257 0.174335392221294 0.175502268301640 0.179423667418322 0.177358356064179 0.176717813678542 0.173181370822215 0.180559198593773 0.173388208640636 0.174003601437389 0.176430077308224 0.177332979115868 0.177914429514826 2 2 + 9517562 9518112 9517781.273 9516097 9518311 + gene protein_coding_gene FALSE TRUE AT2G22410.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to Methyltransferase small domain, putative [Medicago truncatula] (GB:ABD33115.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.166992866251050 -1.71086196597256 0.115426094631766 1 0.690465000279705 3.34270290608679 -0.166992866251050 0.089750077506557
AT2G43390_at 2.08062555371843 1.89643627292315 2.25278887159504 1.81402087380044 1.52862411665017 1.86804640922826 1.79708893592443 2.13474451004983 2.27106506984588 2.55476749560574 2.16094890718572 1.43780159007639 1.97999303071761 1.88949667799415 2.18524703265615 1.87771417102275 2.11298162396087 2.50973827473504 2.00252180399041 0.176882194812519 0.176150459324706 0.173396595993525 0.174868509745497 0.175677934478816 0.173458070006040 0.178400184686040 0.176094524145613 0.182659220812390 0.181718067285820 0.180161373657983 0.179731732152184 0.178211880319458 0.181633356828926 0.179987512599389 0.177253290914544 0.177840006196919 0.184751282176916 0.185972841055846 2 2 - 18027701 18027894 18027809.182 18027427 18027938 - gene protein_coding_gene FALSE TRUE AT2G43390.1 unknown protein -0.184115854969623 -1.71076135891147 0.115445149736096 1 0.690330252003873 4.06922608633168 -0.184115854969623 0.116816618713984
AT4G33865_at 11.6453027656125 11.7011432143581 11.4349024589154 11.5184173135022 11.5146411579118 11.4613701014581 11.5414075334261 11.8098730277474 11.7550191462645 11.6597303397164 11.7491732466457 11.7417740314016 11.6483150930788 11.4127590154164 11.9281593784829 11.4224112666066 11.6745772717042 11.2417541576979 11.7050708791626 0.0704658174664333 0.0687290104808317 0.068890316936531 0.0687290104808317 0.0687477046851605 0.0698077489369992 0.0691519081546721 0.073713160227067 0.0687290104808317 0.0744315903774659 0.0716417705013681 0.0687290104808317 0.0691410142432437 0.0731775248867213 0.0687290104808317 0.0689433230104879 0.0721025490596604 0.0725450028021002 0.0721295754579886 4 4|0 -|/ 16233552 16234082 16233768.6 16233214 16234201 - gene protein_coding_gene FALSE TRUE AT4G33865.1 40S ribosomal protein S29 (RPS29C) Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29 (RPS29A) [Arabidopsis thaliana] (TAIR:AT3G43980.1); similar to Os11g0634500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068325.1); similar to ribosomal protein S29 [Triticum aestivum] (GB:AAW50992.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) -0.148170116545527 -1.71070228155702 0.115456340376754 1 0.690251128612891 23.2328683071217 -0.148170116545527 0.050454980916384
AT1G18500_at 7.89470891539264 8.07225528440784 7.66795741708584 7.68971381083656 8.13041110234845 7.85069658296342 7.57744364537819 7.21303607489143 7.55658056505578 8.04351452257525 8.05961873618086 8.15274892721803 7.83678042569115 7.67017115239955 8.03839053317884 8.3922345168812 7.99650911804988 7.9943379409026 7.90212705889522 0.152584951783139 0.156067029244288 0.160253693575150 0.154253207900339 0.155338059321447 0.155385877952247 0.155364737579825 0.153296231316904 0.155034189326073 0.149311847113162 0.155103124945084 0.151556286945125 0.151178351359162 0.158586799353172 0.156557902544087 0.153516670170040 0.154421537106324 0.150645651337385 0.153881968608400 1 1|0 +|/ 6371752 6372795 6372239.222 6369340 6373018 + gene protein_coding_gene FALSE TRUE AT1G18500.1 IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040). similar to IMS1, 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT1G74040.1); similar to 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) (GB:O04973); similar to 2-isopropylmalate synthase 1 [Brassica insularis] (GB:ABA26446.1); similar to Putative 2-isopropylmalate synthase [Brassica oleracea] (GB:AAW81741.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891); contains InterPro domain LeuA allosteric (dimerisation) domain; (InterPro:IPR013709); contains InterPro domain Bacterial 2-isopropylmalate synthase; (InterPro:IPR005671); contains InterPro domain Alpha-isopropylmalate/homocitrate synthase; (InterPro:IPR002034) 0.164429309130862 1.71042831906750 0.115508248039003 1 0.689884224807837 15.6878643379905 0.164429309130862 0.0853124641548669
AT3G01360_at 4.46438311991467 5.15340029852834 4.73546354324044 5.42970451948479 5.4867307103228 5.22016666645095 4.4157823835915 5.62095223966296 4.14598636190815 4.06481936893189 4.38281484992151 4.71803149807496 4.51340456755652 3.94087851451105 4.57250896959389 4.08344276483458 3.92736169623887 4.18792869925423 3.6863874600067 0.247216256220633 0.233858767850072 0.244460031686352 0.241756912612387 0.246486490613502 0.254090768626521 0.241550643500041 0.233858767850072 0.242313373642574 0.233858767850072 0.240459435874665 0.239318847761558 0.235343919228002 0.248550242530782 0.233858767850072 0.240339955781464 0.234919065245329 0.242101180972472 0.236281269822462 3 3 - 137853 138336 138122.455 136406 138806 - gene protein_coding_gene FALSE TRUE AT3G01360.1|AT3G01360.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55230.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAA89236.1); contains InterPro domain Protein of unknown function DUF716; (InterPro:IPR006904) 0.3147261154165 1.71008954239611 0.115572464993243 1 0.689430562439669 9.19408668945645 0.3147261154165 0.272538074248476
AT1G04180_at 1.05122823915625 1.29808479249130 0.9884385289032 0.567410594530833 1.39335704615855 0.859263211946729 1.28932873895782 0.928969905325282 1.39973708019798 1.29297857193109 2.27935483412197 2.25089744159749 2.43895188319952 1.63631173020228 2.67403831321568 1.69108757839133 1.14720708925849 1.34675249749307 1.33367316916416 0.203825156425496 0.210945500091981 0.21191624475442 0.209876391457896 0.207823683808919 0.212463888143223 0.20354271638898 0.210066371600211 0.223762386584603 0.214502621696816 0.203058541139081 0.203252494452245 0.203058541139081 0.209191305032015 0.209928382861530 0.2103031107141 0.218729570670427 0.209944100296955 0.222368364199057 1 1 + 1105449 1105831 1105606.818 1104622 1105987 + gene protein_coding_gene FALSE TRUE AT1G04180.1 flavin-containing monooxygenase family protein / FMO family protein similar to SUPER1/YUCCA5 (SUPPRESSOR OF ER1), monooxygenase [Arabidopsis thaliana] (TAIR:AT5G43890.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT4G28720.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I; FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Medicago truncatula] (GB:ABE89940.1); contains InterPro domain Amine oxidase; (InterPro:IPR002937); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.200579995119699 1.71002058166524 0.115585540796166 1 0.689338221719926 2.68461252120011 0.200579995119699 0.139876712920642
AT1G01340_at 4.38943169754328 4.7030105276167 4.61966860356994 4.55220952354341 2.62576300675073 2.63983863267317 1.38795598647855 1.97548953030112 3.63780869964662 2.72242360066907 2.08016734826774 1.89109082609649 1.91054573581846 2.31009318170836 1.91574775236235 2.06597529112271 1.97942521417971 2.13726572590094 2.33480603608173 0.201711803305261 0.207654505273247 0.20646870059932 0.209718020276977 0.205260108318194 0.198073276315932 0.20574457651254 0.198375856450554 0.196513222089308 0.197056699934418 0.207789485712490 0.196513222089308 0.196513222089308 0.196513222089308 0.205846477968895 0.196513222089308 0.197527548229358 0.203367240893771 0.196859187957248 1 1|0 -|/ 132419 132970 132648.5 132332 135322 - gene protein_coding_gene FALSE TRUE AT1G01340.1 ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Probable cyclic nucleotide-gated ion channel 10 (Cyclic nucleotide- and calmodulin-regulated ion channel 10) (CaM-regulated potassium ion channel) (CNGC10) [Arabidopsis Thaliana] (GB:Q9LNJ0;GB:Q9LKL3); similar to CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1), calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G53130.1); similar to ATCNGC13 (cyclic nucleotide gated channel 13), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G01010.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to Probable cyclic nucleotide-gated ion channel 10 (Cyclic nucleotide-and calmodulin-regulated ion channel 10) (CaM-regulated potassium ion channel) (GB:Q9LNJ0); similar to cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] (GB:AAF33670.1); similar to cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] (GB:AAF33669.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.183329610775491 -1.70946655072556 0.115690640046976 1 0.688596428545298 5.8289884368419 -0.183329610775491 0.115866035733641
AT1G49270_at 1.95430598155413 1.60490364821243 1.81851193429678 1.46067361040966 1.61181547483419 1.85486166720572 1.20070860433322 1.36341941062334 1.63431383341123 1.78347934898539 1.81784270894077 1.63781941141085 1.82497858559249 1.74712082187705 1.921353825217 1.50091830510638 1.89938777025316 1.86895293986033 1.34211128033649 0.197700788136107 0.195236631536860 0.197329255533002 0.195687086353810 0.197160909474877 0.201006587799278 0.194806208726202 0.197032606933998 0.196409823182866 0.192270198349353 0.192714654421155 0.193854668065804 0.201801224748489 0.192270198349353 0.192270198349353 0.193677081803255 0.197665153657440 0.192681916583767 0.201964489437416 1 1|0 -|/ 18231018 18231712 18231354.9 18231002 18233895 - gene protein_coding_gene FALSE TRUE AT1G49270.1 protein kinase family protein similar to ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G24550.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18810.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G34440.1); similar to receptor protein kinase PERK1 [Brassica napus] (GB:AAK21965.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.173146617813511 1.70925355304766 0.115731068352970 1 0.688311279953565 3.29061584990533 0.173146617813511 0.100263713720858
AT2G23700_at 2.51210519446081 2.20296810634631 1.98811168464836 2.22779756822256 1.69448080639633 2.17856446803331 2.39860243431318 2.528052606775 2.75835504919373 2.90900322031883 2.59377174912176 2.96516058478142 2.30724329799179 2.52052772598031 3.18645522316717 2.71140823310781 2.95030302032382 2.76904427772609 2.49584882701205 0.219654614504041 0.218947163746572 0.221782788236632 0.219217759521667 0.228798657681174 0.216936091382470 0.222872848943084 0.217438328963532 0.226609354370169 0.224747951028488 0.232320868069702 0.22403507542196 0.219457866254235 0.216936091382470 0.219675129417864 0.219237061806962 0.225737534776067 0.224952676831542 0.232999481534525 2 2|0 -|/ 10083734 10084494 10084068.375 10083449 10087312 - gene protein_coding_gene FALSE TRUE AT2G23700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66600.1); similar to Os03g0769000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051393.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87323.1); similar to ternary complex factor MIP1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99069.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.179386610899268 -1.70922039896335 0.115737362347416 1 0.688266896963119 4.95211450674942 -0.179386610899268 0.110010157052840
AT2G40700_at 3.1485988022786 3.32792181076107 3.34427522153612 3.03497888608814 2.92512384956322 2.83953537669879 3.31331790600434 3.11368600805284 2.31703401703309 2.12137935464317 1.91411388359592 2.37342055319399 2.30211049793025 2.0435096467291 2.01176445114277 2.41637414274904 2.99818219400737 2.36565082251535 2.84633450667099 0.223046715431434 0.221734293851196 0.229440656498504 0.223601002894892 0.22488081016677 0.224800044805731 0.230649924042266 0.232148892873379 0.226104500389345 0.233931059671676 0.224149597365791 0.221351127811705 0.220405186620198 0.231869410389262 0.224863246391943 0.219517663732214 0.223057712250539 0.230252277318146 0.221589920656908 2 2 + 16985716 16986235 16986024.9 16983861 16986636 + gene protein_coding_gene FALSE TRUE AT2G40700.1 DEAD/DEAH box helicase, putative (RH17) Identical to DEAD-box ATP-dependent RNA helicase 17 (EC 3.6.1.-) (RH17) [Arabidopsis Thaliana] (GB:Q7XJN0;GB:Q9ZS04); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to Os05g0110500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054440.1); similar to putative ATP-dependent RNA helicase [Oryza sativa] (GB:AAK73153.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.157505658551045 -1.70912449024593 0.115755571453863 1 0.688138507679336 5.49662476600558 -0.157505658551045 0.072393803821439
AT2G22010_at 5.74675366835228 6.0360317423346 6.04623563810677 5.86754439601829 6.52988392423759 5.55877715215575 6.26396899101745 5.91261198393611 4.85785362322435 4.73277326572219 5.25378979460321 5.42904592004009 5.64180276050088 5.49758953321999 4.94119869310795 5.54513160652995 5.4756817577155 4.73717453412105 4.95235104027571 0.2284942612063 0.226514648432806 0.233488717276459 0.227176681821981 0.229026025271527 0.244709790112104 0.230225800031473 0.226514648432806 0.229813276683564 0.231580185523200 0.228342925082215 0.229274115053129 0.226597226064941 0.229730399653203 0.227967110142542 0.231412717079582 0.234001343683215 0.229347677642728 0.234971053627369 2 2 - 9371131 9373819 9372579.65 9370801 9376387 - gene protein_coding_gene FALSE TRUE AT2G22010.1 zinc finger (C3HC4-type RING finger) family protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79709.1); similar to Zinc finger, RING-type; SPla/RYanodine receptor SPRY [Medicago truncatula] (GB:ABE89403.1); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.239143098229286 1.7090320775978 0.115773119231834 1 0.688014802118622 11.0766440043801 0.239143098229286 0.188153676128977
AT3G30370_at 1.37906446478147 1.21638076679728 1.42063962661271 1.63138064438570 1.48088077187337 1.69770893271413 1.60011883389417 1.33980628329615 1.90683029725813 1.60357725611071 2.05871713281178 2.17742726961118 1.93792879812179 1.82566878685964 1.73551906275890 1.69139529430416 1.76761373059889 1.59216671855236 1.60495886161815 0.222051208478359 0.220268559832718 0.222783665764420 0.230216897805900 0.225310252695327 0.221906908054132 0.227355841100925 0.220092833488735 0.218166537397884 0.225591409877814 0.220490305989964 0.216057267951611 0.216343201732683 0.222360379801425 0.219238267131649 0.218236640197825 0.217130157864930 0.224424764472746 0.217577660865778 3 3 - 11967686 11968172 11967969.909 11967659 11968198 - gene protein_coding_gene FALSE TRUE AT3G30370.1 similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18050.1); similar to Peptidase S8 and S53, subtilisin, kexin, sedolisin; Plant MuDR transposase; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE81514.1) 0.158496183788774 1.70811629759712 0.115947141151374 1 0.686789114099783 3.24746090931004 0.158496183788774 0.0745652439279926
AT3G08700_at 2.29254610482500 2.09134394731150 2.43527474513189 2.56378546642432 2.27874142761744 2.43078602695155 2.02411745052278 2.00719160437705 2.42409734111898 2.03224664674697 2.48965679897725 1.95258691627322 2.1719909903583 2.10798669863841 2.05640482149250 2.18684784802479 2.26952367889313 2.25281622812078 2.187349824852 0.222681674830242 0.211011106805176 0.208188042244861 0.208811527321687 0.207937262006606 0.209470724705160 0.209836471828321 0.219986073644658 0.226736229595297 0.213321552264982 0.208397862812704 0.207972174548483 0.211457304283653 0.209961076335757 0.208046806138483 0.209010223514453 0.212945226625493 0.222320246163147 0.213953295599080 3 3|0 +|/ 2643521 2644469 2644015.667 2643488 2644551 + gene protein_coding_gene FALSE TRUE AT3G08700.1 UBC12 (ubiquitin-conjugating enzyme 12); ubiquitin-protein ligase similar to UBC11 (ubiquitin-conjugating enzyme 11), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G08690.1); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.147379641565096 1.70735219986591 0.116092518988982 1 0.685766709971966 4.4657440225635 0.147379641565096 0.0490698805088446
AT1G35320_at 1.46237398346538 1.69325261604300 1.18870455431600 1.41992474624831 1.07274067446956 1.29850166525306 0.91526828320958 1.30311168610676 1.28065401648080 1.32414239549734 1.25899431343274 0.856673566815613 1.18417432464116 1.045593338258 1.13822604980715 0.804307167357345 0.990821408642706 1.36030986133937 1.36154345644446 0.187580445762535 0.189618198332280 0.190654470406284 0.201183873208119 0.186893352763367 0.193730366425507 0.189305441304804 0.185774638858333 0.195331554284876 0.191608575005226 0.184446768012450 0.184446768012450 0.188531824128901 0.193070062838436 0.191574969376102 0.195011686915374 0.184446768012450 0.193943797202753 0.184446768012450 1 1|0 -|/ 12960659 12962798 12961643.889 12960432 12962831 - gene protein_coding_gene FALSE TRUE AT1G35320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09260.1) -0.170379758910943 -1.70733140004685 0.116096478663188 1 0.68573888213706 2.49523517276944 -0.170379758910943 0.0960661105655273
AT1G13690_at 7.96442867202513 8.06442973681699 7.66716887419125 7.69285151634138 7.79106050045947 7.95527053855424 7.92380680998598 7.95686070634052 7.22504714088044 7.43952658226064 7.25450221674629 7.55304194672052 7.40117748223711 7.24356200252511 7.41577868947333 7.2464438961569 7.46991030082811 7.2630863441898 7.6573258516202 0.151074052360543 0.151517716700954 0.151413096217735 0.149894123155623 0.157288551228473 0.158074716326568 0.151027345589430 0.151437852892516 0.161839075363118 0.150540065206817 0.148217853893364 0.147241939187629 0.150345537883469 0.161637422294141 0.148843943608051 0.147533233752199 0.155325942497323 0.153429591039792 0.147939482429160 1 1|0 +|/ 4693598 4694152 4693895.8 4693286 4694405 + gene protein_coding_gene FALSE TRUE AT1G13690.1 ATE1 (ATPase E1); nucleic acid binding AtE1 - stimulates the ATPase activity of DnaK/DnaJ similar to GR-RBP3 (glycine-rich RNA-binding protein 3), RNA binding [Arabidopsis thaliana] (TAIR:AT5G61030.1); similar to putative peptidyl-prolyl cis-trans isomerase [Oryza sativa (japonica cultivar-group)] (GB:AAP12903.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.142744477816507 -1.70705726212401 0.116148677783429 1 0.685372133300548 15.2752701950627 -0.142744477816507 0.0340514714195099
AT1G79380_at 10.4465973328211 10.4254216821935 10.8223943577538 10.5826259648451 10.9074863631279 10.3725619582083 10.1697944589580 9.85956966616031 9.88828132598266 9.74426591723428 9.7917825705832 9.72750907281552 9.8991608697144 9.8834218405682 9.3286365192436 10.1136565164298 9.84372857269959 9.72744238876363 9.97952541082057 0.112519066991144 0.110196322207378 0.113835298461029 0.111911405556585 0.105791074346128 0.118520595321443 0.108348409502531 0.110606232120876 0.121311610351467 0.109766756712884 0.110570366598743 0.112637003493971 0.110204644053489 0.108003794084503 0.111707505769878 0.105791074346128 0.109467584907590 0.108631942165044 0.105791074346128 1 1|0 +|/ 29867299 29867859 29867538.333 29865384 29868209 + gene protein_coding_gene FALSE TRUE AT1G79380.1 copine-related similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to Os08g0135400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060941.1); similar to hypothetical protein S250_18C08.19 [Sorghum bicolor] (GB:AAL73530.1); contains InterPro domain Copine; (InterPro:IPR010734); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.182323892561817 1.70659895705914 0.116235991516449 1 0.68475907183808 20.2783605622742 0.182323892561817 0.114833320805562
AT3G21850_at 0.31695935841083 0.252056012005834 0.596424637509315 0.546619915733344 0.283523027658735 0.965308471642942 0.366588477420015 0.161077526579885 0.267015915030372 0.54719638264796 0.700644044020793 0.320760590038998 0.431616063646351 0.791032616465223 0.31132691441006 0.292233289800931 0.524320852357373 0.406535897380943 0.442307519397429 0.187787196587961 0.192634510148661 0.185991405548638 0.190673263439864 0.182385126235099 0.185857675677942 0.181538506844071 0.186314488625723 0.204239567468295 0.188555168707985 0.187605846705197 0.182888369896164 0.201655719520453 0.191274923072051 0.184563890325893 0.188622300174133 0.184781250640310 0.189847168760508 0.183723124735472 3 3 - 7697165 7697466 7697293.727 7697096 7697557 - gene protein_coding_gene FALSE TRUE AT3G21850.1 ASK9 (ARABIDOPSIS SKP1-LIKE 9); ubiquitin-protein ligase one of Arabidopsis SKP1 homologues similar to ASK10 (ARABIDOPSIS SKP1-LIKE 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G21860.1); similar to SKP1 [Brassica napus] (GB:ABB69022.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.188633757010887 1.70626282027473 0.116300067831484 1 0.684309487832888 0.881644039640281 0.188633757010887 0.124040375001759
AT2G23096_at 1.33353883719431 1.68824721886544 1.73294867360430 1.88709065456935 1.62883224765638 1.57826922877032 1.30650761016847 1.45728259181352 1.36852920282081 2.36154941093883 1.17681103272558 1.45342055090076 1.57161323490707 1.55499653043561 1.68213500635752 1.68184964123917 1.62611176857868 1.56444792846872 2.61096359406906 0.318949233545909 0.330131706976617 0.318949233545909 0.334485482989417 0.318949233545909 0.326367923397857 0.332805866261529 0.324039828982562 0.318949233545909 0.332557186586217 0.332272237053473 0.318949233545909 0.318949233545909 0.318949233545909 0.318949233545909 0.318949233545909 0.318949233545909 0.371831399894596 0.318949233545909 2 2 - 9842247 9842642 9842492.2 9841846 9843315 - gene protein_coding_gene FALSE TRUE AT2G23096.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G33910.1); similar to prolyl 4-hydroxylase [Nicotiana tabacum] (GB:BAD07294.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.157183193800803 -1.70577102690238 0.116393873353748 1 0.683651798799453 3.40289160665253 -0.157183193800803 0.0723665483940537
AT2G16190_at 1.50824172482394 1.47776978741126 1.35826036273073 1.38181661287403 1.34400717360594 1.75819257131896 1.45672490320981 1.33244798766703 2.23166769836776 1.68563748140546 1.70513117034879 1.54519504646657 1.51565651690584 1.46652665293138 1.67978768989191 1.60468001982932 1.85284850220181 1.82710633388981 2.03291574595217 0.159644285026286 0.169511420432019 0.162457019685488 0.165425905448565 0.160262837185128 0.163029972474518 0.167571391910953 0.163082615500836 0.160799408906259 0.159644285026286 0.171026452540488 0.167127152658862 0.166033106851745 0.160826992526673 0.166339607275421 0.163320166200185 0.159644285026286 0.164187758896544 0.163109613289304 2 2 - 7027792 7028346 7028046.091 7027575 7028683 - gene protein_coding_gene FALSE TRUE AT2G16190.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G49330.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94525.1) -0.158508702164606 -1.7051765807992 0.116507349571344 1 0.682856966083539 3.2686943738552 -0.158508702164606 0.0751299899552428
AT3G57010_at 1.67492517928532 2.19283133129460 1.45901952940762 1.53764562901574 1.50125917645813 1.65623556213550 1.94861993760448 2.16522326631029 1.02922858461676 1.77312151426474 2.20769777854996 3.30676363160594 1.95265351497375 2.19280825454580 2.82091695210225 2.42184660767960 2.38892828515946 2.67697938278736 2.27369469142924 0.189939627624469 0.189939627624469 0.194125906027392 0.194312104160644 0.194207308653276 0.194126430734674 0.193858287516344 0.190595500812733 0.2024029783923 0.197864525879417 0.194092285244285 0.193734389081275 0.189939627624469 0.189939627624469 0.199699429919517 0.193030556066297 0.19074774064108 0.195129494349837 0.195648304934534 3 3 - 21106847 21107396 21107107.727 21106633 21108430 - gene protein_coding_gene FALSE TRUE AT3G57010.1 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57020.1); similar to putative strictosidine synthase [Oryza sativa (japonica cultivar-group)] (GB:AAR87254.1); similar to Os03g0750700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051286.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.173599708226253 1.70490814427700 0.116558624996592 1 0.682498089193125 3.86101456695350 0.173599708226253 0.101697193651057
AT1G28060_at 7.49284535252166 7.2303239445502 7.09805992877394 7.05118250349576 7.32956047536668 7.24436571616913 6.46706760682233 6.44671004866048 6.31427605698574 6.35693168487337 6.39404192541132 6.82205184950075 6.64603864038467 6.37284889930001 6.26277719445721 6.32906395227669 6.10627833370637 6.18946865233153 6.43247633788727 0.197591056840172 0.181322791033680 0.177903042458032 0.184280787253801 0.183061947724149 0.205570390146900 0.185589407559352 0.182432849187907 0.193218982044125 0.185172080936165 0.182173653773222 0.188713504694310 0.182076984085216 0.181644818041748 0.185442659930387 0.180019063785972 0.195015076559219 0.192325230794086 0.180805791722386 1 1 + 9781890 9782442 9782172.455 9779125 9782687 + gene protein_coding_gene FALSE TRUE AT1G28060.1 small nuclear ribonucleoprotein family protein / snRNP family protein similar to RNA splicing factor-related [Arabidopsis thaliana] (TAIR:AT3G55930.1); similar to Putative u4/u6 small nuclear ribonucleoprotein (ISS) [Ostreococcus tauri] (GB:CAL53657.1); similar to Os09g0249600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062673.1); contains domain U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED (PTHR14212) 0.146990952742490 1.70488309494543 0.116563410828446 1 0.682464601916258 13.4241223841299 0.146990952742490 0.0485749243504482
AT4G04850_at 8.06847480373422 7.79473336902519 8.16494624282576 8.12556096534687 8.67842625643613 8.05383383788131 8.90570946207005 8.67559861205053 8.18781966126012 7.67413129468204 8.37791834668522 8.17752112849821 8.20569365399846 8.48638836618077 8.16708612834153 8.5641805370764 8.45366066853968 7.96898431377249 7.58859594942326 0.127774339482724 0.124366290351506 0.127616260829457 0.127873229218224 0.125743812636357 0.133797229003797 0.123306226084429 0.127211857522168 0.131768345413690 0.134931272287214 0.122060336711058 0.122456644658404 0.125891161920238 0.121893308778275 0.125821833612896 0.121893308778275 0.127143775761059 0.132372259146464 0.129606405747476 4 4|0 +|/ 2455969 2456808 2456396.5 2453794 2457765 + gene protein_coding_gene FALSE TRUE AT4G04850.1 KEA3 (K+ efflux antiporter 3); potassium:hydrogen antiporter member of Putative potassium transporter family similar to KEA2 (K+ efflux antiporter), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT4G00630.1); similar to TrkA-N [Medicago truncatula] (GB:ABE84788.1); similar to Os12g0617800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067289.1); contains InterPro domain TrkA potassium uptake protein; (InterPro:IPR006036); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain TrkA-N; (InterPro:IPR003148) 0.188946469166988 1.70464959218373 0.116608031468804 1 0.682152455815066 16.3669244993421 0.188946469166988 0.124737756751125
AT1G04600_at 2.37335512794735 2.33162492528256 2.13368712640458 2.44839442353093 2.24509431969744 2.08458692200553 1.78532061085591 1.53253215311662 2.59132864689698 1.52725516396391 1.42304681086151 1.52923041999625 1.26334988928416 1.47473054690352 1.34979530774905 1.75703369165443 1.55313390631619 1.06965734523373 1.78252220674256 0.222720053475479 0.213581143331963 0.210547853644744 0.213005823015838 0.217505507438015 0.213967736464006 0.214887756862956 0.225954995911384 0.212364595054649 0.218199624327473 0.219119522237586 0.217750447757586 0.220838541341493 0.215725439500079 0.227145660715754 0.212266709435712 0.214137097357856 0.221067297467429 0.214421697396103 1 1|0 +|/ 1271224 1272318 1271799.444 1262122 1272375 + gene protein_coding_gene FALSE TRUE AT1G04600.1 XIA (Myosin-like protein XIA); motor/ protein binding member of Myosin-like proteins similar to XID (Myosin-like protein XID), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT2G33240.1); similar to MYA2 (ARABIDOPSIS MYOSIN) [Arabidopsis thaliana] (TAIR:AT5G43900.1); similar to XIB (Myosin-like protein XIB) [Arabidopsis thaliana] (TAIR:AT1G04160.1); similar to myosin subfamily XI heavy chain [Petroselinum crispum] (GB:AAK21311.1); similar to putative myosin subfamily XI heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD21517.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71528.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.158652802921142 -1.70459004678780 0.116619412600378 1 0.68207285932728 3.81409074058062 -0.158652802921142 0.0755214045994915
AT1G06470_at 6.55873011991193 6.76696528380138 6.92368794143697 6.77189771358298 7.70098810033307 7.12603374972683 7.19995982863559 6.86716128786675 6.4782182540939 6.29869750627638 6.47126799994768 6.40920209372672 6.16297055061743 6.64548588693047 6.22907408166475 6.41769906898463 5.80011868832703 6.28915380871271 5.85238071016156 0.206532667533718 0.198245028295175 0.207013503242534 0.203557930852811 0.202249275089527 0.207509515914843 0.207827422890989 0.198245028295175 0.20729923151806 0.204818797553791 0.204448404802659 0.203743329540773 0.210459992745413 0.212057957948754 0.204179103245882 0.200785696984634 0.224634273282586 0.207251039038735 0.207716410969372 1 1|0 +|/ 1972054 1973221 1972544.3 1969728 1973766 + gene protein_coding_gene FALSE TRUE AT1G06470.1|AT1G06470.2 phosphate translocator-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT3G14410.1); similar to Os06g0153200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056840.1); similar to Os01g0749900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044249.1); similar to phosphate translocator-related-like [Oryza sativa (japonica cultivar-group)] (GB:BAD86978.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.187901889201347 1.70427719649302 0.116679225191141 1 0.681654685699693 13.2458715094325 0.187901889201347 0.123310346997867
AT4G30825_at 5.55351297774314 6.10010164856682 5.11903423194750 5.07678292726579 6.07881005306655 4.91062553931574 6.15609503280928 5.70377849241103 5.19775347659419 6.12365313851794 5.37990455185147 6.36933671921005 5.54957416072684 5.9887598631762 6.19735237304951 6.03714626802651 5.82693132019808 5.37898457544451 6.13996473730351 0.236152009839490 0.232795168244787 0.242984849223904 0.233295703156454 0.233848687383118 0.245404148688826 0.243752354027420 0.235786450373052 0.251409274621525 0.231100608667015 0.232999949316726 0.234382846587280 0.232465177441259 0.235621630832079 0.240841839052726 0.230703205004685 0.249561291942315 0.241492806873953 0.236496788036652 4 4 + 15011762 15012242 15011971.273 15009611 15012325 + gene protein_coding_gene FALSE TRUE AT4G30825.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to Os09g0423300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063210.1); similar to pentatricopeptide repeat protein [Physcomitrella patens] (GB:BAF34331.1); contains InterPro domain Cdk-activating kinase assembly factor (MAT1); (InterPro:IPR004575); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.280758619247579 -1.70388966239458 0.116753354398314 1 0.681136742968536 11.4180705361069 -0.280758619247579 0.236635383835760
AT4G31960_at 0.664541425139037 0.964071098064887 1.18061579626718 1.20347904866914 0.718057029914121 0.946386423226858 1.00091085638112 0.865211956322614 1.07675779177495 1.0846198698393 1.23975591755102 1.20252042729499 1.11752684265385 0.805125882296208 1.04627637938734 1.06671609221128 0.856527728231976 1.44126714532111 0.611549642269496 0.165400232025049 0.162105528405995 0.164972824511710 0.161467715981213 0.15987382574626 0.163811811603263 0.165086820595903 0.16688373347267 0.165450884516177 0.165491852964308 0.161782499869352 0.163925883863668 0.170826847276878 0.160487303621296 0.163692648383812 0.165496923592897 0.171344970759178 0.164198558437525 0.164233565414642 4 4 - 15459233 15459502 15459376.818 15459113 15459787 - gene protein_coding_gene FALSE TRUE AT4G31960.1 unknown protein 0.155553095558149 1.70370130441185 0.116789399571899 1 0.680885023873853 1.95354603082965 0.155553095558149 0.069392386164373
AT3G47540_at 7.27113072501599 7.1904036852758 8.14619665398283 8.67697952438177 6.46546096806308 6.47221976070224 7.53257412653095 8.00506826135055 5.67205538066267 7.59249982635212 6.40486740593803 5.18369773175407 6.27109150011121 6.00406247215875 5.79301289602265 6.74145265609577 7.88038232810976 6.9351628111076 6.89079677645979 0.224987126970862 0.228595773958610 0.228944546492048 0.229228713164313 0.226485841261154 0.239408677596275 0.234668781766743 0.224987126970862 0.255066777529882 0.224987126970862 0.224987126970862 0.229574274963761 0.233431179240729 0.240710586401926 0.240629340334309 0.224987126970862 0.235540882826123 0.241217342533023 0.224987126970862 3 3 + 17532085 17532946 17532559.636 17532014 17533254 + gene protein_coding_gene FALSE TRUE AT3G47540.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43590.1); similar to Basic endochitinase CHB4 precursor (GB:Q06209); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.188157204378404 -1.70365291485195 0.116798661262291 1 0.68082035914195 14.0300876563231 -0.188157204378404 0.123772646712154
AT4G34030_at 7.95669673415231 7.99959874359724 7.98181507717 7.50493833557317 8.41748200546833 8.0252342386761 8.08202936852595 7.73866042715565 8.19996868853968 8.51163729376895 8.06692538873835 8.05305308712048 7.8894672953103 8.02976841890151 8.12834945165038 8.05337887464425 8.12876997004036 7.83789997974066 8.59665858745738 0.137438096215546 0.136456646564803 0.138795599774327 0.143442683837979 0.139402208117549 0.143030160480178 0.135421579633277 0.143572096205623 0.148841154946517 0.137657558874370 0.139129735390344 0.131481916831351 0.137872167214185 0.141350383758231 0.138389887236306 0.133673873821196 0.153601803712812 0.135499517554975 0.137488066599110 4 4|0 +|/ 16303030 16303900 16303549.625 16301184 16304104 + gene protein_coding_gene FALSE TRUE AT4G34030.1 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE); biotin carboxylase MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. Identical to Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase subunit beta) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) (MCCB) [Arabidopsis Thaliana] (GB:Q9LDD8;GB:O49501;GB:Q94F35); similar to putative methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC99804.1); similar to CG3267-PA [Drosophila melanogaster] (GB:NP_652724.1); similar to Methylmalonyl-CoA carboxyltransferase 12S subunit, putative [Aedes aegypti] (GB:EAT33766.1); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763); contains InterPro domain Carboxyl transferase; (InterPro:IPR000022); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, N-terminal; (InterPro:IPR011762) -0.187257767894803 -1.70362479648696 0.116804043378216 1 0.680782784002758 16.1930767403850 -0.187257767894803 0.12249196742084
AT1G23980_at 2.96486751902521 3.06646705203616 2.67449272246167 2.9375790433159 3.01283029258201 2.73203753881403 3.22599533884265 3.03785432249887 3.52704447931247 2.91790486446598 2.94443534110919 3.05004659082787 3.29247143847085 3.52743475198452 2.94573479369643 3.07613491462501 2.64387153559909 2.96638397567489 2.9719504685477 0.243745930702979 0.246790803445394 0.248827545542285 0.243364226592934 0.252046585412588 0.249873861656781 0.244929244523611 0.252083434139045 0.247364784152874 0.250214702125117 0.254175460193398 0.243642365647687 0.247540345161554 0.247516950914591 0.248291611662491 0.244032622098047 0.253553717596789 0.247431273954731 0.246838143239987 1 1 - 8484943 8485438 8485214.364 8484692 8485991 - gene protein_coding_gene FALSE TRUE AT1G23980.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1D (ATL1D) [Arabidopsis Thaliana] (GB:Q8GW38;GB:Q9LR95); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G40250.1); similar to RING finger 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36516.1); similar to Os02g0743100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048093.1); similar to Os06g0233200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057231.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.158856797583778 -1.70317979926476 0.116889249569252 1 0.680188169899235 6.05390586462566 -0.158856797583778 0.0761791445748793
AT2G18780_at 1.96352829481202 2.15458735203708 2.09564180884233 2.43127829591138 2.36667572402285 1.88981164599436 1.78023150904118 1.89877054618533 1.35536990403026 1.23524118730147 1.09963914000665 1.17687188328953 1.66415401911799 1.40991896740574 1.17056450107017 1.28127435347314 1.36855005042030 1.06318659055828 0.92167039792367 0.199143820917778 0.194797348991917 0.190642302436713 0.199704565789170 0.195794277039944 0.202039444614366 0.191708799648934 0.199732709804043 0.207364363902937 0.197772203895305 0.194786141505210 0.193623591981342 0.203333667416879 0.208559248488339 0.194722858075318 0.194543449051537 0.208964664345675 0.199592215277319 0.20162489657661 2 2 - 8144065 8144554 8144331.727 8143840 8145200 - gene protein_coding_gene FALSE TRUE AT2G18780.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G16740.1); similar to F-box protein interaction domain [Medicago truncatula] (GB:ABE93710.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.177540942461542 1.70316657926294 0.116891781731095 1 0.680170506356541 3.29758086439891 0.177540942461542 0.108156571389887
AT2G23080_at 7.98065048841557 8.31189504651866 8.12540368363635 8.1863317004739 8.79295005929251 8.2565882366011 8.47172032037754 7.72405793979594 7.19415474051079 7.05313919173328 7.13771976765298 7.18930590815147 7.58442416522128 7.6690061894874 7.09854880425203 7.49932005770636 7.4967487743097 6.92283319122626 7.04408774234207 0.197175404281444 0.190103178974262 0.196957639115647 0.196057332840208 0.191787250048011 0.199496186745443 0.189655494176168 0.191770440488505 0.204028309760322 0.193829854601847 0.195125092773217 0.196770051272019 0.195117384620541 0.190220238369313 0.197310835775983 0.198805244657716 0.206472529666360 0.205391499670007 0.194021944554715 2 0|2 /|+ 9835199 9836164 9835628 9834193 9836617 + gene protein_coding_gene FALSE TRUE AT2G23080.1|AT2G23080.2 casein kinase II alpha chain, putative Identical to Probable casein kinase II subunit alpha (EC 2.7.11.1) (CK II) [Arabidopsis Thaliana] (GB:O64817); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82533.1); similar to protein kinase CK2 alpha chain [Nicotiana tabacum] (GB:CAD27342.1); similar to protein kinase 2 [Beta vulgaris] (GB:CAC80988.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82533.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.222924301806464 1.70294542131772 0.116934149658420 1 0.679875023239853 15.4421324754454 0.222924301806464 0.169568689513326
AT4G08190_at 1.81263277335493 1.6435884219559 1.57629468482029 1.49231518575118 1.41956609943882 1.77140873809724 1.65586174665641 1.41383916390984 2.37587562369861 2.09458221889467 2.14111606027846 1.77646164564972 2.02768434729802 1.65889399549426 2.08287177859583 1.61480251777406 2.11462590620096 2.21609258929083 2.15946944741617 0.174570067185892 0.176519398711741 0.179581640237586 0.177776957921168 0.174030460804957 0.180475364597755 0.169743161171496 0.174529317543663 0.182613435308678 0.172734330729284 0.169605259013137 0.171461014866763 0.176392407322534 0.169605259013137 0.174240883446015 0.171571245637603 0.175836184054891 0.174152127455563 0.178341285623649 4 4|0 -|/ 5174576 5175442 5175265.2 5174520 5175473 - gene protein_coding_gene FALSE TRUE AT4G08190.1 Ras-related GTP-binding protein, putative similar to AtRABA2d (Arabidopsis Rab GTPase homolog A2d), GTP binding [Arabidopsis thaliana] (TAIR:AT5G59150.1); similar to Os01g0848700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044805.1); similar to Os03g0823700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051744.1); similar to Ras-related protein Rab11C (GB:Q40193); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.161245753853052 -1.70289457905326 0.116943891616868 1 0.679807097208836 3.6802105359527 -0.161245753853052 0.0807994286013414
AT2G02710_at 9.94446958118773 9.84030841376897 10.1676570655909 10.0571056911797 10.8877105329493 10.5178299542202 9.8391961840424 9.50423730773404 9.91053811662092 9.78285716001876 9.60619916222451 9.48084569977459 9.7807503639804 9.73795796316929 8.67394902923902 9.71918187862959 10.1318765380625 9.7165110339718 10.0022376890686 0.092589921455358 0.0921369968190838 0.098910867039916 0.0918033995627354 0.0977269265545508 0.0956758557570518 0.0919818416119676 0.09303970191392 0.0956255704996622 0.0947226083293068 0.095497557545547 0.0974393817771135 0.0955253465459647 0.0982234512129115 0.111605394598341 0.0925246115068625 0.0907948325485858 0.0960236784597167 0.0903697405377197 2 2|0 -|/ 758834 759753 759356.111 758692 761012 - gene protein_coding_gene FALSE TRUE AT2G02710.1|AT2G02710.2|AT2G02710.3 PAC motif-containing protein similar to PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE), kinase [Arabidopsis thaliana] (TAIR:AT5G58140.1); similar to Os01g0186200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042244.1); similar to putative phototropin [Oryza sativa (japonica cultivar-group)] (GB:BAD67804.1); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold-3; (InterPro:IPR013655); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.166443788015224 1.70218001139901 0.117080887891008 1 0.67885254021927 19.8470409816013 0.166443788015224 0.090267583048718
AT4G36290_at 5.11962442456544 5.1405014881952 5.06239673843375 4.91228916286578 5.3584636616718 5.08785785251575 4.87201469274629 4.87731980352041 4.75150675391491 5.1217624281487 5.45871871357678 5.38702603550195 4.91878035430406 5.33500290630569 5.05745657818212 4.85515225321971 5.3502817404969 4.98259270450673 5.04796977146747 0.227235856649589 0.221655534980231 0.221866403359851 0.226242487622068 0.218877415207612 0.228852462800911 0.217326386588045 0.219837319426804 0.215529832537935 0.214492503888686 0.209596604983321 0.216440260780684 0.215677707507086 0.21393699625143 0.214567200557214 0.21571419736503 0.230140812926136 0.222657308702259 0.224584621993324 4 4|0 -|/ 17169707 17170588 17170223.444 17169467 17173218 - gene protein_coding_gene FALSE TRUE AT4G36290.1 ATP-binding region, ATPase-like domain-containing protein similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36280.1); similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36270.1); similar to Os10g0181700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064253.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK70637.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) 0.148633422266493 1.70209650325942 0.117096907376928 1 0.678740999820439 10.1247448423670 0.148633422266493 0.0536814853549593
AT1G13890_at 1.64353496095761 1.52795554054901 1.82645222914814 1.60344604214379 1.65789622188463 1.60695053373368 1.48142812318167 1.37597875220493 1.82577386903613 1.55270215492728 1.99398033425850 1.54044696457981 1.76567191130439 1.86906833189096 1.69888225246099 1.84900590301818 1.94173805004875 1.52041837670921 1.55899881332908 0.186497538622490 0.181503808649571 0.187209143620249 0.184580561346806 0.186376388264637 0.191346576035211 0.184143363301201 0.188238998911616 0.190722496019139 0.182274836421156 0.190781116584612 0.189683580895706 0.181503808649571 0.187301906630387 0.184817183415356 0.183283714287214 0.181936925396925 0.18733290660079 0.188658700757709 1 1|0 +|/ 4751867 4752808 4752452.625 4751578 4752841 + gene protein_coding_gene FALSE TRUE AT1G13890.1 SNAP30 (synaptosomal-associated protein 30) Encodes a member of a gene family homologous to mammalian SNAP25, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. Identical to Putative SNAP25 homologous protein SNAP30 (AtSNAP30) (Synaptosomal- associated protein SNAP25-like 3) (SNAP30) [Arabidopsis Thaliana] (GB:Q9LMG8); similar to SNAP33 (synaptosomal-associated protein 33), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G61210.1); similar to Os02g0529500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047013.1); similar to SNAP-34 [Hordeum vulgare subsp. vulgare] (GB:AAP79417.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.146519241136970 1.70191184371252 0.117132337854078 1 0.678494363734644 3.29956853112444 0.146519241136970 0.047959999628456
AT4G23460_at 8.35841535004031 8.32616316425845 8.30954596363195 8.1288402867111 8.63704522336071 7.68167335158518 7.63860041409368 6.64234156482292 6.80056963791134 6.59729530310066 6.99356045750145 7.17916673264291 6.42352418239028 6.88022362273354 6.71668170531962 6.95217503691785 6.59300757280445 6.65430579204544 6.63709103193153 0.238544987262133 0.236135144106665 0.241968855406374 0.236135144106665 0.236135144106665 0.245349331464518 0.244771540300242 0.247941991688063 0.257092974512453 0.263569846120599 0.237696921797705 0.240495639073118 0.242385671247163 0.248057663686318 0.239879578672177 0.248625639538434 0.244888275448171 0.249826323862691 0.252076125447943 4 4|0 -|/ 12243929 12244854 12244336.5 12243681 12248960 - gene protein_coding_gene FALSE TRUE AT4G23460.1 beta-adaptin, putative similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G11380.1); similar to Adapter-related protein complex 1 beta 1 subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96009.1); similar to PREDICTED: similar to adaptor-related protein complex 1 beta 1 subunit isoform b isoform 1 [Canis familiaris] (GB:XP_543470.2); similar to coatomer, gamma-subunit, putative [Aedes aegypti] (GB:EAT36247.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Alpha/gamma adaptin, C-terminal; (InterPro:IPR008152); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain AP2 clathrin adaptor, alpha and beta chain, appendage; (InterPro:IPR009028); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.284329031582498 1.70185631975554 0.117142993068400 1 0.67842020733039 14.7040278125342 0.284329031582498 0.240972753651017
AT3G09350_at 4.55462784164731 4.56450514221599 4.12552723628943 4.70914423311439 4.25777329629964 4.61080006043976 3.64972004356311 3.85849869460444 2.77998461049617 3.11657576074856 3.37306616683643 2.52865618017594 3.18063762156473 2.64166837441744 2.92570375881775 3.30130470294522 3.53992184588897 2.87294832646851 2.9205431676763 0.247266762210096 0.242838947273378 0.242588413439313 0.241443607193895 0.245013034422473 0.242384987003366 0.241447913734806 0.243846134994812 0.243665346797577 0.240405136616846 0.239248523205744 0.236828346827969 0.236828346827969 0.236828346827969 0.242615611855887 0.236828346827969 0.239244323774249 0.251149597616836 0.239717122416411 3 3 + 2872459 2873028 2872748.727 2871051 2873318 + gene protein_coding_gene FALSE TRUE AT3G09350.1|AT3G09350.2 armadillo/beta-catenin repeat family protein|binding similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G53800.1); similar to Os03g0271400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049691.1); similar to putative stress-induced protein [Solanum commersonii] (GB:CAJ19270.1); similar to Os03g0822700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051736.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.187713567596897 1.70164987972193 0.117182617147935 1 0.678144502695677 7.28358601107828 0.187713567596897 0.123455162089392
AT1G55270_at 6.62764205294603 6.71833216472231 6.4795109473926 6.47476229538739 7.39956904158141 7.28406527130627 7.1078274957592 7.30831274350513 6.45853338557914 6.68480738987545 6.5568383902095 6.38250272936459 6.35090794408489 6.69963134318817 6.07642601518107 6.37150041568657 6.65269659223188 6.44036355454464 6.95649916068042 0.214108869354143 0.2026055707218 0.2223982421934 0.21626727781696 0.207803572470073 0.216871042557237 0.207391058488477 0.202012194889712 0.218742006981201 0.212355112033149 0.216492565271799 0.200586142036366 0.211509371942306 0.204136594679804 0.222099876508442 0.206935917254711 0.211673682008334 0.204486477249697 0.219949100788523 1 1 - 20622074 20622562 20622302.364 20621621 20623803 - gene protein_coding_gene FALSE TRUE AT1G55270.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G22040.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE78679.1); similar to Os10g0409900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064574.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE86510.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.144819998816587 -1.70126250870412 0.117257001505756 1 0.677627210161547 13.4956552607949 -0.144819998816587 0.0430146858456589
AT2G14730_at 1.69265229558687 1.90358052967077 1.6885037386481 1.69699730575923 1.48411463597358 1.85450311529073 1.80037624033845 1.86810427600635 1.63772681278092 2.11857670649650 1.49343983129487 1.69404406356747 1.80632596416336 1.63185813040534 1.88009131476059 1.57286975211719 1.65310846944930 1.80504379629067 1.86193838186401 0.211480472034587 0.212560576896871 0.218461516983005 0.205685690551784 0.206428119608140 0.213177866803669 0.205685690551784 0.206150569990494 0.213160140405439 0.207254949734615 0.213127272103546 0.205685690551784 0.206728354297569 0.214207662962485 0.206665800754179 0.212656367792302 0.212986082056648 0.205685690551784 0.207816668134836 2 2|0 +|/ 6312633 6314362 6313758 6312631 6314391 + gene protein_coding_gene FALSE TRUE AT2G14730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32621.1); similar to hypothetical protein 26.t00094 [Brassica oleracea] (GB:ABD65037.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912) -0.157899135803540 -1.70093962235000 0.117319035606259 1 0.677196078771943 3.53102649997755 -0.157899135803540 0.0747022229210129
AT4G29620_at 1.93243055407461 1.91500085307508 2.03905674107933 1.66654361722537 1.53097508197012 1.56478455438872 1.50640484680416 1.94453504186089 1.96380747416572 2.28119098596444 2.03237329826099 1.57178665921219 1.97403157983199 1.47057163058498 1.83058246044662 2.00418519177071 1.74292451611781 2.04388070632203 1.91538599890078 0.187829219680619 0.187433626392868 0.188536834562501 0.193031689936258 0.189324415043451 0.192807004785666 0.196356575510648 0.193146623713920 0.195770740389668 0.201325904763418 0.191213926506639 0.190405217879337 0.195332432925849 0.203751092126568 0.190654805181365 0.192152226924131 0.190885744936854 0.193866661227048 0.191287550509057 4 4 + 14520317 14520885 14520625.273 14519869 14521093 + gene protein_coding_gene FALSE TRUE AT4G29620.1 cytidine deaminase, putative / cytidine aminohydrolase, putative similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29600.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE79232.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) -0.171961153156516 -1.70075218964417 0.117355059342551 1 0.676945831120226 3.70609315714081 -0.171961153156516 0.0997388015449268
AT1G34640_at 6.34948187460956 6.32689494542357 6.5672616702583 6.77766207167029 7.51666624282582 7.39517207821648 7.13151941732722 7.13258021981142 7.62293696310604 7.0787350411558 7.26696093639324 7.45823807386033 7.55379520951585 7.75479031820363 7.32005064262109 7.2030379270745 7.15490793197493 7.39229251441897 7.5826084404669 0.190762335966105 0.172077122423896 0.181590282381001 0.174500101121385 0.186164063767306 0.187041549086593 0.193046736938526 0.175150766195054 0.178068053624612 0.175741249187888 0.174553574717191 0.174812835377035 0.179298019009292 0.175986782018937 0.183027892173126 0.172077122423896 0.179722054360083 0.176447824326562 0.177273537386355 1 1|0 -|/ 12687716 12688372 12688109.8 12687530 12688521 - gene protein_coding_gene FALSE TRUE AT1G34640.1 similar to Os07g0622900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060318.1) 0.144493557065678 1.70032629702249 0.117436950853226 1 0.676377263282822 14.3077061529349 0.144493557065678 0.0422269179933301
AT3G15770_at 6.8293517799759 6.39745532331428 6.83769877057184 6.77804844063729 7.06544008343921 6.53356660511011 6.79407159214716 6.09178615576123 7.7198046565513 6.53705555522633 6.95306785886845 6.17797485682483 5.64384535482883 6.26157449551688 6.35435763278175 6.592886369489 6.21706495248733 6.68290273686046 6.98854674058358 0.187172815455747 0.177751632182617 0.179591735980733 0.189374340718031 0.183163965389492 0.181263436730585 0.180234768241641 0.187226945755264 0.205699999489147 0.189462449947681 0.181197216706359 0.187445389185133 0.185925527868391 0.184752349042954 0.190199698894661 0.185945815205172 0.183171962743833 0.186684683447784 0.180139737502358 3 3|0 +|/ 5340611 5341049 5340804.75 5340081 5341346 + gene protein_coding_gene FALSE TRUE AT3G15770.1|AT3G15770.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25360.1); similar to hypothetical protein [Glycine max] (GB:AAN03467.1) -0.222910386553286 -1.69952923901493 0.117590348336323 1 0.675313396187653 13.3870581437001 -0.222910386553286 0.170103750784219
AT1G56060_at 5.37410401709704 5.32076680467082 6.67274652144585 7.01140046497818 4.52699605216936 5.39348385094353 3.77380854120965 4.02675983696738 5.33952645539779 4.93267240502304 3.70196906377329 3.66442650927778 4.42007055489376 4.40856691071914 4.78400719924055 4.3034865066723 3.89305995861293 4.71870276676352 4.94726232987571 0.241903913541902 0.238623095457901 0.242490062051103 0.248861136415943 0.241937687217406 0.240760759110066 0.241029526466309 0.243321617258117 0.245397910737247 0.236631086037134 0.238207708129815 0.237545187885582 0.241706686228968 0.240159478130842 0.253238441966003 0.240552751368352 0.247462653111485 0.236631086037134 0.242229276741932 1 1|0 -|/ 20970404 20970774 20970585.222 20970193 20970809 - gene protein_coding_gene FALSE TRUE AT1G56060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32190.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32591.1) 0.220464688021659 1.69940102879626 0.117615039728768 1 0.675142293849495 9.91747821810673 0.220464688021659 0.167095620191036
AT1G16710_at 7.02771546902614 7.41078001388492 6.93939655487125 6.77410172905266 7.64640284947463 7.63703552755577 6.38918818098021 6.38135269176337 5.88631370975051 6.28926949458156 5.9027583429079 6.02045969138671 6.25390127781621 6.0403568671601 5.38911444271092 6.23536993997985 6.28830219487341 5.79986976561018 6.19998641477884 0.231356414419934 0.220859249669556 0.222675394545411 0.222153771702074 0.217848688578325 0.216523600945308 0.220277432845129 0.223225711925202 0.228648283597175 0.225289569487592 0.220892963451733 0.232353335295777 0.222595337053016 0.226595174253284 0.222807231387907 0.219364812414627 0.216523600945308 0.232817994732461 0.232535411338495 1 1|0 +|/ 5720807 5721744 5721165.9 5714685 5722359 + gene protein_coding_gene FALSE TRUE AT1G16710.1 TAZ zinc finger family protein / zinc finger (ZZ type) family protein Identical to Histone acetyltransferase HAC12 (EC 2.3.1.48) (HAC12) [Arabidopsis Thaliana] (GB:Q9FWQ5); similar to histone acetyltransferase 5 (HAC5) [Arabidopsis thaliana] (TAIR:AT3G12980.1); similar to HAC1 (P300/CBP acetyltransferase-related protein 2 gene), transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G79000.1); similar to histone acetyltransferase 4 (HAC4) [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) 0.156525884296802 1.69936234167726 0.117622491207640 1 0.67509066551469 13.0839748462474 0.156525884296802 0.0722303645407143
AT3G42190_at 1.59394827424429 1.33094416244852 1.21408009387381 1.36727080521063 1.24580137887066 1.37202798349642 1.57109353928450 1.54812326120234 1.74243955591166 1.65913058819630 1.27378242310738 1.56707802505642 1.73356161833806 1.48533979944771 1.71937612489640 1.92583314525862 1.43474561221891 1.72760086000348 1.68835581187533 0.204245200010166 0.204245200010166 0.216567018298141 0.208118555441278 0.213035749265223 0.208157136985063 0.212802933312896 0.207710322464343 0.209367992435093 0.205072379129128 0.210720788495319 0.206126641471304 0.207434744209945 0.204245200010166 0.207767935744323 0.205548535848811 0.207791439459447 0.208281639978945 0.209377475945611 3 3|0 +|/ 14380561 14382022 14381453.222 14375912 14382054 + gene protein_coding_gene FALSE TRUE AT3G42190.1 similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1); contains domain Cysteine proteinases (SSF54001) -0.149729764109462 -1.69893344948776 0.117705127934753 1 0.674518347483883 3.05793953051321 -0.149729764109462 0.0571602845508945
AT4G03450_at 7.25641800913555 8.4485612935286 9.36919823263717 9.16491790087551 5.10196057165587 3.91811909254994 2.69366553767272 2.62602058717918 4.39011895938673 2.89863946923265 2.9634198827175 2.47297208852442 2.61228219512108 3.05852223345165 2.65330668175883 2.93248491566722 2.12450868810418 2.31308559586230 3.5429068017855 0.3134880509538 0.310685561631064 0.318136247732456 0.324451952253083 0.288649941966374 0.293858741782241 0.288810473168132 0.292163323020115 0.294113787413321 0.28654868730846 0.289300037445925 0.28757929397513 0.292592564829475 0.297642552640674 0.288939695922092 0.28654868730846 0.288103540940183 0.293554869343712 0.288891377253315 4 4 - 1529619 1530128 1529897.909 1529444 1531778 - gene protein_coding_gene FALSE TRUE AT4G03450.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G03440.1); similar to Ankyrin [Medicago truncatula] (GB:ABE77954.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.331575150449939 1.69757100530946 0.117967981578596 1 0.672700808916139 9.19829658413058 0.331575150449939 0.293121732131935
AT1G53360_at 1.33101431533272 0.860625940774713 0.60238864273139 0.970576893038414 0.981470260872762 0.721587668950487 0.862771168836678 0.96748531549047 1.03465088232635 1.05725708194763 0.78775473606465 1.29678899600857 1.33971517848166 0.98865576519796 0.954288177755855 1.13845096447297 0.910029164372198 1.50677905272826 1.77998031244875 0.187021782498459 0.184920667964916 0.183113913831164 0.183088731396021 0.182784694902263 0.185937129476223 0.184994484845034 0.187587696615124 0.193286953129958 0.191192653788615 0.188764132630841 0.186455352254997 0.185488821037239 0.182784694902263 0.182784694902263 0.185684611857608 0.18901220853537 0.18908105380056 0.195755489879184 1 1 + 19911628 19912153 19911865.273 19911185 19912216 + gene protein_coding_gene FALSE TRUE AT1G53360.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G53370.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.18089499494968 -1.69731292409164 0.118017831831575 1 0.672356610640343 2.11520861573321 -0.18089499494968 0.114180914376174
AT4G02075_at 5.40847572734167 5.9999791971524 7.47392958602095 7.48574563015687 8.40129618938887 7.32144245385741 8.03352366156189 6.77843079456071 6.5713107153523 6.7192730703286 6.2750722408974 4.96355088336495 6.47736899980056 5.93124552339659 4.30636098709532 7.5677964732627 7.52843817665353 5.69548001671802 6.28345287814424 0.296906499223719 0.295657003652904 0.295593968080567 0.299107439303889 0.313418013342107 0.327612725678932 0.297864767640334 0.313810134057119 0.314981350170189 0.297164047443650 0.301357495941572 0.308946152979915 0.303034439874163 0.309531149690729 0.315195305978435 0.301267757565270 0.311065897132369 0.323350317559767 0.304189329078396 4 4|0 -|/ 913588 916304 914835.125 913419 916476 - gene protein_coding_gene FALSE TRUE AT4G02075.1 PIT1 (PITCHOUN 1); protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01275.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78108.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.341993197204389 1.69729968240750 0.118020390067095 1 0.672338951211854 13.4217744303003 0.341993197204389 0.304269184803719
AT4G11410_at 7.19158514553347 7.58958241634112 7.65430563712131 7.57888483923043 8.07320121360003 7.70387329838436 8.03529079157185 8.16096892652603 6.89053407109513 6.96202830516512 7.0876146564893 6.9535439673315 6.8687412680296 7.59724659656796 6.97531225383518 7.30932352792376 7.47206204760662 6.7284274298087 6.52379035104814 0.189506680041098 0.18646914867611 0.192303592166293 0.191912768253428 0.190283376506467 0.180947741859259 0.186476546748825 0.187361058077941 0.203739779482821 0.187591183771227 0.184136945555951 0.192303252738761 0.182242379173094 0.190854698748558 0.196644041210622 0.181268843245528 0.199833916598208 0.182597596445068 0.186289164616004 4 4 - 6945196 6946449 6945789.091 6944913 6947328 - gene protein_coding_gene FALSE TRUE AT4G11410.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23430.2); similar to 3-ketoacyl-CoA reductase 3 [Gossypium hirsutum] (GB:AAY23356.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.170062909885268 1.69654947377057 0.118165408192229 1 0.671338577299624 14.7065373056478 0.170062909885268 0.097325091633597
AT2G38140_at 9.44492486355417 9.56622333902215 8.65510006527571 8.72906456749388 9.30872269229554 9.3467571866658 9.32764575786892 9.45429442776014 10.3958609083018 10.0304500516441 10.4535904621699 10.6968520095667 9.7367222888873 10.2372833644770 10.8115134162049 10.4243895097570 9.77680247053008 10.0837334034861 9.94167276169698 0.117583978969322 0.115179065414784 0.117817808199142 0.122721883879401 0.118666954268758 0.119338871281486 0.119476622782595 0.118679419578329 0.117961414939975 0.111651284741317 0.110820119668205 0.113364487662922 0.111755555594515 0.115401976794213 0.118744552893618 0.114032730619829 0.112193629369337 0.115903781099949 0.110820119668205 2 0|2 /|+ 15988251 15988503 15988354.571 15987961 15988690 + gene protein_coding_gene FALSE TRUE AT2G38140.1 PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete Identical to 30S ribosomal protein S31, chloroplast precursor (Plastid-specific 30S ribosomal protein 4) (PSRP-4) (RPS31) [Arabidopsis Thaliana] (GB:O80439); similar to 30S ribosomal protein S31, chloroplast precursor (Plastid-specific 30S ribosomal protein 4) (PSRP-4) (GB:P47910) -0.141705672015686 -1.69603249198231 0.118265435499385 1 0.670649342313897 19.4292276655833 -0.141705672015686 0.0335880227673866
AT2G26150_at 2.54673588889309 2.23180167603291 2.77088571775925 2.99754747179546 2.09267892838986 2.47086018798092 2.21100766478054 2.60274676667371 2.58204670560834 2.82636601629251 1.67982911978235 1.85935956092031 1.99063130313424 1.82348657969644 2.154311482869 2.45413028533629 2.00290783125561 2.65572900044924 2.46945597291572 0.199191027221191 0.207674740311064 0.201031977625478 0.201823350874036 0.202597496206156 0.200563954900371 0.201156320110105 0.197803622009336 0.204867054373325 0.197103908527130 0.211732573250505 0.195891995101013 0.215098147667242 0.199059172123732 0.205441703453499 0.200052752400589 0.206401977641476 0.196057425656101 0.202791177487470 2 2 + 11143714 11144234 11143978.364 11142760 11144474 + gene protein_coding_gene FALSE TRUE AT2G26150.1 ATHSFA2 (Arabidopsis thaliana heat shock transcription factor A2); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-2 (AtHsfA2) (HSFA2) [Arabidopsis Thaliana] (GB:O80982); similar to AT-HSFA6B (Arabidopsis thaliana heat shock transcription factor A6B), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G22830.1); similar to Heat shock factor protein HSF30 (Heat shock transcription factor 30) (HSTF 30) (Heat stress transcription factor) (GB:P41152); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.181744004394390 -1.69568528000015 0.118332657726597 1 0.670186506923482 4.84228522630620 -0.181744004394390 0.115706126152858
AT3G19880_at 0.465216189311938 0.536215159572624 0.0707532728025584 0.277348865998949 0.71274986270508 0.453021103671164 0.424475550244026 0.480602331750087 0.732182448309872 0.824457074575125 0.707855025706766 0.728482568171325 0.611679137532545 0.420448527302474 0.414831627037738 0.64947988709302 0.346990270215126 0.4340173433497 0.668949444757827 0.195374515770258 0.186715003753151 0.197793528123655 0.195302486077663 0.191398278804609 0.19311490015163 0.19065076652451 0.194829576002711 0.203084311421489 0.188810477224936 0.188412312894362 0.187867377656636 0.187008687150409 0.188376012555073 0.19852686905064 0.193853885833953 0.19613486915433 0.192864632173616 0.192992505100134 3 3 - 6911533 6911953 6911765.182 6911441 6912610 - gene protein_coding_gene FALSE TRUE AT3G19880.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G05080.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.150399486169209 -1.69547509580878 0.118373367201698 1 0.669906355362365 1.06809081076473 -0.150399486169209 0.0595297571541691
ATMG00110_at 1.81343531442306 2.12386067845685 2.70413535257827 2.23454893884874 1.82406443294379 1.84824997667046 2.87149101601078 2.15251059655647 2.33503224089548 2.68701571241408 1.93451653567566 2.5747225661553 2.21648384455096 2.34227029744845 1.95779449377700 2.08053397167537 2.32436859692095 2.47676501672783 2.70715305777396 0.215875375526089 0.208758538862368 0.206243707961291 0.205855084075175 0.209088448214260 0.2130143870515 0.212427724646942 0.210781649813701 0.209252467893698 0.208225151668688 0.211286928817945 0.207158942670073 0.20751328085655 0.206801465264875 0.206734138136252 0.209999333685741 0.214259855504187 0.208479206947111 0.211590887489419 M M + 30510 31039 30756.909 30463 31083 + gene protein_coding_gene FALSE TRUE ATMG00110.1 Encodes a mitochondria-encoded cytochrome c biogenesis protein. similar to HelB-homologue protein [Brassica napus] (GB:BAA32558.1); contains InterPro domain Cytochrome c-type biogenesis protein CcmB; (InterPro:IPR003544) -0.212771573881437 -1.69529516962575 0.118408226117393 1 0.669666549298226 4.60395316450819 -0.212771573881437 0.158076989934951
AT3G15095_at 8.10981477659914 8.47242642999018 7.2570592652208 7.33495034477874 8.18320328771797 8.2933886764313 7.67115226657581 7.72112547940529 7.77171329014272 8.12705774457847 7.93974095895444 8.1833840768189 8.09836711531166 7.7005458120862 8.28749814333515 8.43831221706598 7.7768965522247 7.80329530013745 8.43072757216298 0.123136381945843 0.120379061349176 0.130633982598535 0.132564358610966 0.128153439206003 0.123100879625035 0.125267018705012 0.128086258024304 0.134110659278462 0.123155746656025 0.128219338251665 0.123879603001442 0.120008800293826 0.134435473747568 0.121857347640443 0.126741919839764 0.123666545935532 0.133093622981851 0.122197285571036 3 3 + 5083547 5083992 5083787.455 5081787 5084088 + gene protein_coding_gene FALSE TRUE AT3G15095.1|AT3G15095.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22230.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78110.1); similar to Os06g0352900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057589.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001185087.1)|similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to Os06g0352900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057589.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001185087.1) -0.153903595787491 -1.69528613876302 0.118409975999665 1 0.669654513307187 15.9495590113165 -0.153903595787491 0.0675118101814162
AT1G09630_at 7.77796191411832 7.83488850628354 6.99244269568359 6.9091713416808 6.38302518041448 6.67420466192084 6.17608256368972 6.69185932468206 5.94811383579967 5.6029600370848 6.47397495564704 6.95540785160785 5.82578192221387 6.39638748596958 7.20507251801278 5.96716446472004 5.67608443244188 6.59666700504153 5.42450024308835 0.205519443117789 0.195773109129658 0.196058529729377 0.194674042380803 0.197628575160247 0.200119817915931 0.196562922499546 0.196277199259066 0.206937670199159 0.194674042380803 0.199638401571725 0.194674042380803 0.194674042380803 0.198103371504468 0.195241295026762 0.194674042380803 0.214378452514371 0.206330418293746 0.197187598383925 1 1 - 3118356 3119492 3118795.818 3118205 3119710 - gene protein_coding_gene FALSE TRUE AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding Encodes a putative GTP-binding protein. Identical to Ras-related protein Rab11C (RAB11C) [Arabidopsis Thaliana] (GB:O04486); similar to AtRABA2b (Arabidopsis Rab GTPase homolog A2b), GTP binding [Arabidopsis thaliana] (TAIR:AT1G07410.1); similar to Ras GTPase [Medicago truncatula] (GB:ABE91946.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.174027883432035 1.69509376057001 0.118447258023041 1 0.669398127248703 12.9527506659497 0.174027883432035 0.103974881765072
AT4G00830_at 6.6509358864934 6.75937399995706 6.70446620014684 6.5792636804591 7.49991158919177 7.04735238963334 6.7212447219074 6.87416979317937 6.70906954823809 6.40735812028528 6.5831715163109 6.88470912065763 6.516673208442 6.92927943274286 6.33260908535187 6.78505304867575 6.96993176852328 6.333448513767 6.51832485455696 0.165789168530031 0.164264548697441 0.167242736171528 0.16978041485682 0.160863109955690 0.162512246440721 0.160957706253386 0.166209779119562 0.179930543980816 0.166690438059043 0.162152715244146 0.160653390702038 0.167516355159663 0.166025806986416 0.170598997036867 0.160092395988746 0.160092395988746 0.167000557026938 0.168633149487253 4 4|0 +|/ 354099 354827 354436.6 352023 355233 + gene protein_coding_gene FALSE TRUE AT4G00830.1|AT4G00830.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G52660.2); similar to RNA-binding re (GB:ABD32695.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.164129659294464 1.69463931824385 0.118535368604228 1 0.668792546300922 13.4604782673722 0.164129659294464 0.087496274058117
AT1G65660_at 8.30410785332218 8.38420618741029 8.60088589410149 8.43949381005248 8.90046321206396 8.46027455352144 8.54166111833059 8.37963427314678 8.53445852909683 8.43423956729255 7.8926596452807 7.90026748058212 8.04603908358386 8.12257281490563 7.67525722852938 8.2381367097547 7.96795908925832 7.87366761601364 8.50154548663386 0.135224498926744 0.135903360085162 0.144803116483046 0.136869128342080 0.134874410775342 0.150528976479497 0.135080508192416 0.135246004745059 0.139578723062917 0.131559049529006 0.143771742879941 0.140966520008673 0.131349152108464 0.143288250224853 0.141251239676054 0.137866942609055 0.136544378426976 0.138336869752820 0.135937795303647 1 1|0 -|/ 24421958 24422962 24422489.125 24421774 24424955 - gene protein_coding_gene FALSE TRUE AT1G65660.1 SMP1 (swellmap 1); nucleic acid binding Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells. similar to SMP2 (swellmap 2) [Arabidopsis thaliana] (TAIR:AT4G37120.1); similar to step II splicing factor SLU7 [Gallus gallus] (GB:NP_001006146.1); similar to Os08g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060905.1); contains domain Retrovirus zinc finger-like domains (SSF57756); contains domain STEP II SPLICING FACTOR SLU7 (PTHR12942); contains domain no description (G3D.4.10.60.10) -0.163817113235081 -1.69454601223386 0.118553466706583 1 0.668668219484953 16.7286664391585 -0.163817113235081 0.0869557758206458
AT3G05630_at 2.62994764242842 2.78898671568691 2.65344817754864 2.65569143830437 2.49546750430681 3.16355046785639 2.17294710281501 2.13139820132833 2.05211834154330 1.48220401700722 1.87125053265132 1.52940371830593 2.38412423345076 1.77696185834881 1.32441277637107 1.73447982608911 1.84837273445618 1.68052689979472 1.60203531210546 0.217248161732526 0.210704825064741 0.210685517669783 0.209325644900171 0.209377729912867 0.214747971723694 0.206390413338349 0.206909261205858 0.207201186152033 0.206836593511666 0.217447057475319 0.210490772424160 0.224512267340396 0.211387235158268 0.222561309514812 0.211695835871200 0.225005894580657 0.214378888437623 0.209795490958791 3 3|0 +|/ 1639141 1640072 1639709.9 1635206 1640352 + gene protein_coding_gene FALSE TRUE AT3G05630.1 PLDP2 (PHOSPHOLIPASE D ZETA 2); phospholipase D Encodes a member of the PXPH-PLD subfamily of phospholipase D proteins. Regulates vesicle trafficking. Required for auxin transport and distribution and hence auxin responses. This subfamily is novel structurally different from the majority of plant PLDs by having phox homology (PX) and pleckstrin homology (PH) domains. Involved regulating root development in response to nutrient limitation. Plays a major role in phosphatidic acid production during phosphate deprivation. Induced upon Pi starvation in both shoots and roots. Involved in hydrolyzing phosphatidylcholine and phosphatidylethanolamine to produce diacylglycerol for digalactosyldiacylglycerol synthesis and free Pi to sustain other Pi-requiring processes. Does not appear to be involved in root hair patterning. Identical to Phospholipase D p2 (EC 3.1.4.4) (AtPLDp2) (Phospholipase D2 PHOX and PX containing domain) (Phospholipase D zeta 2) (PLDzeta2) (PLDP2) [Arabidopsis Thaliana] (GB:Q9M9W8;GB:Q7XZQ3); similar to PLDP1 (PHOSPHOLIPASE D ZETA1), phospholipase D [Arabidopsis thaliana] (TAIR:AT3G16785.1); similar to Os05g0358700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055304.1); similar to Phospholipase D/Transphosphatidylase; Pleckstrin-like [Medicago truncatula] (GB:ABD28341.1); similar to putative phospholipase D-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC00694.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736) 0.183895915160438 1.69452482740832 0.118557576166129 1 0.668639992006081 4.3268350542771 0.183895915160438 0.119063572710383
AT2G48120_at 5.19104198983807 5.34584063461523 5.19336271663979 5.41887142563205 5.42279064972693 5.48260517271132 5.22849858226488 5.09758400706646 4.45507352926627 5.15870714613681 5.10652350974495 5.14270668248672 4.85083741256708 4.532865377577 5.43009604305587 5.44070448632156 5.37455538340486 4.86098522400955 5.26710683517858 0.199183332884008 0.194841191798266 0.195982043739955 0.195042959493672 0.204177639710735 0.20396164923759 0.200329598599783 0.196090117004071 0.208049074250560 0.205313980073689 0.195934304664458 0.196346961352203 0.197179061913250 0.20175649407696 0.200757870954062 0.201323975873032 0.210121469248941 0.205330057254353 0.198208465455677 2 2|0 +|/ 19687568 19688384 19688048 19686800 19688616 + gene protein_coding_gene FALSE TRUE AT2G48120.1|AT2G48120.2 PAC (PALE CRESS) The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. similar to moesin actin-binding domain homologue (GB:AAA21761.1) 0.147889807883382 1.69442579758130 0.118576787789014 1 0.668508043394464 10.3239269481901 0.147889807883382 0.0534885067550909
AT1G71430_at 4.64456368289697 5.19261642504639 4.8848099900605 5.05568372778681 4.98331605257611 4.73588943973831 4.82342890397962 4.67532680719955 4.38601336368638 4.51717171534895 4.72249696731741 4.76554041711095 4.53459299127899 4.71290817146577 4.5804617701231 4.74824283267931 4.70441131027282 4.56111051935376 4.26680784052287 0.222143133739089 0.217040713983816 0.224526543390334 0.217988367095415 0.213785804134599 0.222970619175179 0.210066799810172 0.215666464320907 0.215347130107870 0.209477930420792 0.212961282508544 0.214932108548226 0.212692027683083 0.214107204454189 0.209477930420792 0.214130310846688 0.219397137278810 0.219034158685426 0.214539769564807 1 1 + 26924266 26924695 26924477.909 26924102 26924814 + gene protein_coding_gene FALSE TRUE AT1G71430.1 similar to Os01g0617800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043585.1) 0.178581915178665 1.69428347460037 0.118604403090257 1 0.668318417789163 9.40256350981203 0.178581915178665 0.111175170593348
AT4G15200_at 0.198969321825705 0.360208623042219 0.307959773107762 0.235878864097886 0.212003981779294 0.453309529502263 0.36932814077889 0.385392988421779 0.181119365860532 -0.121090089934889 0.286412904991403 0.285289538902283 -0.0742004861105248 0.328780539236934 0.725569380916776 0.39720722257792 0.952217334826676 0.588282399981577 0.286521293150656 0.215958152348537 0.210229290623657 0.220042581961578 0.213564588403371 0.217561120974445 0.212990977201190 0.213818352832341 0.210229290623657 0.229965583983015 0.224169589183502 0.21241048079112 0.214640965805365 0.214736855978723 0.211399249564614 0.219851351696233 0.212870194497217 0.218905177912214 0.230336138011724 0.213173848817768 4 4|0 -|/ 8663509 8664264 8663801 8663499 8665759 - gene protein_coding_gene FALSE TRUE AT4G15200.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to Fh5 (FORMIN HOMOLOGY5), actin binding [Arabidopsis thaliana] (TAIR:AT5G54650.2); similar to Pyridoxal-dependent decarboxylase; Actin-binding FH2 [Medicago truncatula] (GB:ABE93173.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) 0.147245633330633 1.69422587269958 0.118615581373692 1 0.668241673724209 0.591237258206548 0.147245633330633 0.0518240836596343
AT3G52820_at 1.57194597562899 1.94777552646100 1.19532917462163 1.92713972925032 1.20414964242725 1.11115496081462 1.47544144404177 1.55246169607304 2.21457127212280 1.88773643667196 1.46636561419493 2.0625333016973 1.88506457250248 1.94502199876255 1.72146913888476 2.15244945609854 1.83892537866712 1.98431460851121 1.92134452539201 0.208495357337783 0.210047072768553 0.214054763396817 0.212650667694314 0.217615211803544 0.214322671241736 0.221778596656215 0.209119800840328 0.224512614715105 0.20530601122898 0.207760967952389 0.210262626445955 0.209431968660963 0.214506327366264 0.218088989644103 0.206766042410184 0.210120646790133 0.208804376450221 0.209762089090926 3 3|0 -|/ 19585289 19586439 19585988.667 19584922 19587955 - gene protein_coding_gene FALSE TRUE AT3G52820.1 ATPAP22/PAP22 (purple acid phosphatase 22); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP21/PAP21 (purple acid phosphatase 21), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52810.1); similar to Os04g0410600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052730.1); similar to H0717B12.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67156.1); contains InterPro domain Purple acid phosphatase, N-terminal; (InterPro:IPR008963); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.201664426585071 -1.69367120280390 0.118723269423923 1 0.667502749678795 3.44312581202839 -0.201664426585071 0.143893123455985
AT2G43550_at 9.7359773570335 9.72639826504573 5.7297548902132 5.35683690141369 7.02829168706665 6.52180283046297 8.15097272993345 7.96594614983363 4.52460617621249 7.40822515780158 8.65312011381275 9.41163251009047 7.89841941085266 8.45154264805194 9.51427473629532 8.4006919778005 7.20546820432148 8.530837169066 6.46514425722603 0.208048328024427 0.205772472099515 0.224606941648614 0.217834038615913 0.197231436270371 0.209682605191251 0.203239191179772 0.197247834535893 0.222177467471579 0.199937916095514 0.200625177053748 0.205392256407595 0.197231436270371 0.202996850086872 0.205313636591654 0.197231436270371 0.202280382281502 0.205146257421896 0.206816758962013 2 2|0 +|/ 18080342 18080698 18080601.6 18080311 18080982 + gene protein_coding_gene FALSE TRUE AT2G43550.1 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. Identical to Putative trypsin inhibitor At2g43550 precursor [Arabidopsis Thaliana] (GB:O22869); similar to ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G43510.1); similar to rapeseed putative trypsin inhibitor 1 [Brassica napus] (GB:CAJ44305.1); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.180031116149713 -1.69365049851939 0.118727290812100 1 0.667475170253278 14.8474510397252 -0.180031116149713 0.113469685512970
AT4G36105_at 0.944325979195119 1.28704308168313 1.33605366572593 1.18803068955925 1.12276979945020 0.885026513251416 1.32967269860895 1.61183416223836 1.98979075643697 1.70853458610021 2.05916346162631 1.46309475009172 1.98530794898755 1.56043706213268 1.94538355155774 1.71495895277203 1.43428157759643 1.95088542613432 2.10849587381319 0.202055419090161 0.198505862200286 0.201625254453013 0.199276033251720 0.199359135489423 0.215810554891524 0.197913600326474 0.20963546005817 0.197855168918906 0.205832704948845 0.203301702129464 0.197681755702778 0.201191903482761 0.223560767680641 0.198314368479392 0.205989322798438 0.201410762460686 0.196894597228618 0.20783820618456 4 4|0 +|/ 17084106 17084923 17084483.8 17083888 17085123 + gene protein_coding_gene FALSE TRUE AT4G36105.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17990.1); similar to Helix-turn-helix, Fis-type [Medicago truncatula] (GB:ABE81083.1) -0.165833397094567 -1.69260592798699 0.118930335709853 1 0.66608397448 3.06299265545361 -0.165833397094567 0.0908335519626001
AT2G01210_at 1.08814319509780 0.882063817686545 1.02928683498621 0.788974617592465 0.892794166039273 0.901032930192568 1.16834795680793 0.775220909136495 0.970906505378927 0.95254198029058 1.22768821314781 1.3050210293996 1.14481605248885 1.33357516224696 1.44032900256778 1.16276973008236 0.770819154333556 1.69435346261676 0.647121361113562 0.173066515134271 0.172287160050501 0.180361528461940 0.177767630197061 0.175845679123056 0.17477129077482 0.172287160050501 0.178399453988915 0.177836819372628 0.175718649741917 0.177210589281678 0.172287160050501 0.179058502919121 0.173502451756873 0.183477871937404 0.177144662315001 0.182235732247376 0.190935133785439 0.179492742063844 2 2 - 119520 119976 119775.909 119440 121845 - gene protein_coding_gene FALSE TRUE AT2G01210.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G66830.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G25320.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os01g0514700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043190.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.16382151389327 1.69224734495700 0.119000109095213 1 0.66560650897438 1.99912209916982 0.16382151389327 0.0873601170769506
AT1G20550_at 2.63172434220664 2.46621629937158 2.89590085928395 2.68767156764956 3.04381237129363 2.80068699340229 2.54055910784729 2.78124072142693 2.74120148973062 2.85851872662407 3.06728614014205 2.76181656672155 2.77218940600329 2.92673880645928 2.71804878989047 2.77828063561579 2.77054947881927 2.67270870356638 2.63878605600816 0.170074927540823 0.172547390062492 0.170124519872069 0.177486347846714 0.171884016566029 0.176054098577599 0.182171436701329 0.180553222552465 0.180032076801596 0.180571318977190 0.172857076059271 0.170074927540823 0.177263239721801 0.179112354891759 0.174961221540455 0.170074927540823 0.17290728826861 0.172481128326341 0.180645652925908 1 1 - 7115504 7116149 7115824.636 7115231 7118151 - gene protein_coding_gene FALSE TRUE AT1G20550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76270.1); similar to axi 1 [Nicotiana tabacum] (GB:CAA56570.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.157183194321113 1.69165861499713 0.119114744060971 1 0.664822714781007 5.5082870694885 0.157183194321113 0.0749927825384714
AT2G28120_at 3.97475398054988 4.83008969170984 4.10472373261712 4.1121423079 4.70812897692356 4.79884735650964 3.34592879092455 4.17482777526037 4.00340464417387 3.47095027049716 4.8585195666714 3.29316138312866 3.95035771095009 4.16778115909702 3.18900554306791 2.4878037773956 3.28352662153747 4.37490360069504 3.16163231856425 0.265992013480515 0.266115703416342 0.263988360427083 0.267438169716248 0.266179300157345 0.269699987315482 0.263306025970193 0.260225876993127 0.269433086286458 0.260307943826830 0.260225876993127 0.265072720690923 0.260225876993127 0.263674258757522 0.263895163755828 0.268792886638269 0.280688030660803 0.265378825959496 0.260734430502781 2 2 + 11994157 11994677 11994382.364 11992764 11994815 + gene protein_coding_gene FALSE TRUE AT2G28120.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G39210.1); similar to nodulin family protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF98224.1); similar to putative nodule-specific protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37543.1); similar to nitrate and chloride transporter [Glycine max] (GB:AAW51884.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.252431938224613 1.69133308618081 0.119178172022483 1 0.664389392264734 7.87916107558087 0.252431938224613 0.206723018151535
AT1G33490_at 8.65112762253781 8.78195122056375 9.08338282463239 8.9576521268635 9.4059294268221 8.59160974854322 8.95079154111705 8.64273036208578 7.54145205914299 8.09251947769599 7.8491378879062 8.04450521668564 7.95993817707828 8.14466082618475 8.05477413196233 8.25844376689128 7.83710996545264 7.7520442302528 7.83360301910835 0.145116825008160 0.147262515210794 0.143790193496346 0.147220733019876 0.145259495616280 0.150942331741387 0.146761941009016 0.142172484460698 0.160879989197054 0.149268265137122 0.149479967941057 0.145004018280458 0.144121067703647 0.145735780169420 0.151628845996744 0.141114032096156 0.17663983887789 0.148006492896775 0.149984917995111 1 1|0 -|/ 12150938 12152182 12151384.3 12150670 12152374 - gene protein_coding_gene FALSE TRUE AT1G33490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10140.1); similar to hypothetical protein LB305 [Leptospira interrogans serovar Lai str. 56601] (GB:NP_714849.1); similar to Os05g0105500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054411.1) 0.209022634229251 1.69130406546978 0.119183828055649 1 0.66435076401751 16.7881976727878 0.209022634229251 0.153905953951769
AT4G33090_at 10.2787311260493 10.3927806785109 10.4595383817008 10.4377543369238 10.6133384371397 10.3816286976764 10.3309437517837 10.1245134090206 9.67586722067389 9.847832821445 10.0462557368775 9.89275993054522 9.68052245922978 9.98751530219557 9.68946465077529 9.9693315405648 9.80301298258772 9.80117416669492 9.73204700217948 0.161727537417900 0.158805590870562 0.164192523526245 0.16025768540724 0.160206946648288 0.169654448368136 0.160454967849703 0.160963857672804 0.174714237242721 0.165470753710721 0.154611803531649 0.160118822139793 0.164023959823045 0.167417706269287 0.169374729880161 0.154611803531649 0.18088965039149 0.182014289466277 0.167329557981185 4 0|4 /|- 15965936 15966663 15966326.857 15965744 15970459 - gene protein_coding_gene FALSE TRUE AT4G33090.1 APM1 (Aberrant peroxisome morphology 1) encodes a Arabidopsis aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2). similar to peptidase M1 family protein [Arabidopsis thaliana] (TAIR:AT5G13520.1); similar to putative puromycin-sensitive aminopeptidase [Oryza sativa (japonica cultivar-group)] (GB:BAD23406.1); similar to putative puromycin-sensitive aminopeptidase (PSA) [Oryza sativa (japonica cultivar-group)] (GB:BAC99372.1); similar to Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE80472.1); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930) 0.149080818385068 1.69074902961319 0.119292048770843 1 0.663612048845313 20.1827387411589 0.149080818385068 0.0573395508269075
AT3G62560_at 8.9886882404307 9.16628753717477 9.1899593238378 9.32900385043756 9.4186381107225 9.48099087841922 9.0836128033685 9.28441120144761 9.0437454349297 9.30632743100968 9.29202440774038 9.2231460880093 9.43173348540365 9.35683124288323 9.17371407381754 9.34131622279833 9.01336112047044 9.2768932646076 9.22741228435094 0.123000144173997 0.11163336647372 0.116910456852306 0.117439526026140 0.11163336647372 0.116580123870182 0.11163336647372 0.113817429857653 0.124917537042492 0.116744309131103 0.11163336647372 0.115514308340842 0.113400771303977 0.113849357010611 0.121162757433514 0.11163336647372 0.121240718441510 0.118206409864216 0.114095979363844 3 3|0 +|/ 23148543 23149759 23149444.8 23148425 23150021 + gene protein_coding_gene FALSE TRUE AT3G62560.1 GTP-binding protein, putative similar to ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G02080.1); similar to GTP-binding protein SAR1A (GB:O04266); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.147515266684204 1.69068493343237 0.119304551881402 1 0.663526749699666 18.4707602623864 0.147515266684204 0.0533622565109481
AT2G22710_at 2.30621519044949 2.50114677090972 2.64028665132251 2.61834893732724 2.12050825769171 2.65007574481513 1.55413378564409 2.11064582097434 2.17406892593104 2.17840215036745 1.81075061248240 1.54427963875811 1.30238325892453 1.59552015967810 2.59172375544739 2.17523646567787 2.02088698680338 2.70734475069222 1.54291149796119 0.310072050076358 0.309494257424804 0.335312557328312 0.309836278744234 0.305826226161832 0.333386544716433 0.32069562492153 0.325369242059379 0.320283536634594 0.30343703618615 0.323913370961266 0.30343703618615 0.32322889318574 0.30343703618615 0.30343703618615 0.313402104686389 0.329814989236449 0.30343703618615 0.321338802121318 2 2 + 9658929 9659066 9659005 9658799 9661612 + gene protein_coding_gene FALSE TRUE AT2G22710.1 myb family protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G01980.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.196328842299753 1.69056094129107 0.119328742099904 1 0.663361746074994 4.27949175904739 0.196328842299753 0.137208117872459
AT3G17930_at 9.75734538234897 9.80694494215034 9.85530602029282 9.85872949537532 9.91899576468395 9.6517589352484 10.3748158831375 10.2867111648711 9.58725191276424 10.0097904232479 9.78508363599221 9.60576209391464 9.70092424727365 9.79545438842873 9.68534052588512 9.89866844055472 9.84556554970918 9.50102755000848 9.75503029740004 0.101700333972768 0.102054966584425 0.104835956671410 0.101806338397031 0.0990285249151365 0.110489391770237 0.102674702524171 0.098647529177715 0.108763252161330 0.098647529177715 0.0993951545874119 0.098647529177715 0.100783372343249 0.102830463438200 0.0991927345081689 0.098647529177715 0.107252607437976 0.102745061646530 0.098647529177715 3 3|0 -|/ 6142488 6143189 6142711 6142135 6143316 - gene protein_coding_gene FALSE TRUE AT3G17930.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56506.1); similar to Os01g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044558.1) -0.146026348196699 -1.69011663021144 0.119415460885221 1 0.662770529555628 19.6944522060677 -0.146026348196699 0.0494493825366319
AT2G36730_at 3.28751924092276 2.73817253335427 3.02820515296982 3.09229478431111 2.95360552836973 2.61511077073172 3.04545816464286 2.87033623622406 3.35805436263996 3.09058662214458 2.49023368849734 2.77934503727218 3.09706867890578 2.84618261243154 2.81267621143244 3.06172012394523 3.00488128315702 3.12658029108228 3.1574322922498 0.198724648075926 0.195511071501735 0.196126705538650 0.199806435396768 0.193895197016956 0.194366727261106 0.195674351262914 0.191081254419695 0.199043744921293 0.191769752653593 0.196223205654155 0.195465792356805 0.192442689326412 0.192983417592979 0.198192382368543 0.197001889883614 0.214858804134922 0.198805926410250 0.195085041878617 2 2 - 15412148 15412697 15412454.273 15412147 15413652 - gene protein_coding_gene FALSE TRUE AT2G36730.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Os07g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058897.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE91570.1); similar to Os09g0412900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063159.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.181377959764015 -1.68895840850048 0.119641782692516 1 0.661229757130385 6.00601800970009 -0.181377959764015 0.116234993232980
AT2G23540_at 1.24344527488382 0.949061282564105 1.04209779554541 0.596836664064148 0.696238034745953 0.834917600334082 0.88280457517111 0.658266485034917 0.883197851286989 0.94151940514087 0.76905729157962 0.831742773887898 1.02924143825965 0.509268362954893 0.267916132332716 0.434363295320855 0.823662485518662 0.834623454910198 0.851639371974511 0.201286376655783 0.201146642977715 0.203825489796382 0.208235368529722 0.201146642977715 0.201146642977715 0.20215246995943 0.205960683273031 0.209498813958468 0.208558812727997 0.201146642977715 0.206974700614176 0.206223918799253 0.202280417783769 0.203330059735934 0.202837283488718 0.210272613391593 0.214686148331022 0.203042197098608 2 2 + 10032331 10033097 10032687 10031426 10033313 + gene protein_coding_gene FALSE TRUE AT2G23540.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G50400.1); similar to H0404F02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66728.1); similar to Os03g0310000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049914.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.172753176264825 -1.68834531972001 0.119761738166055 1 0.66041440436124 1.65276010428279 -0.172753176264825 0.103046574203145
AT3G46500_at 0.692656202663177 0.853134069053402 0.700083409027528 0.793882285539058 0.493514924064042 0.649316877483934 0.878710368266598 1.04538676554468 0.846323275987752 0.713582221715178 0.325990664482316 0.758382382471748 0.798012588419806 0.711952018653423 1.25357435624610 0.816867347910731 0.547792384369617 0.914093540750585 0.991182295540492 0.190858405838583 0.187075358644732 0.193206151969267 0.191851876993731 0.192676171061706 0.197265271522884 0.187702580221947 0.190590174452654 0.199403265789589 0.191912653727461 0.193116984836287 0.187075358644732 0.187075358644732 0.189148081926359 0.187075358644732 0.188578235674349 0.190042675840999 0.187925422084746 0.196047890283967 3 3|0 +|/ 17131816 17133347 17132501.4 17131465 17133730 + gene protein_coding_gene FALSE TRUE AT3G46500.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G46480.1); similar to Os01g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042255.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81241.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.146400957344045 -1.68829273933352 0.119772030921002 1 0.660344484736965 1.57143349178573 -0.146400957344045 0.0509282690192214
AT1G58160_at 1.45936931362171 1.99258164186646 1.52783754425293 1.84213489955086 1.57881725447839 0.951941307808358 1.89494934030105 2.05616257893969 2.08601088396325 2.14373857566409 2.37404601038097 2.14628494772732 1.69331689313217 2.32449939807435 2.03028370328138 2.34335797359396 1.87843096457723 2.28413037486809 2.30317778437084 0.203632849422228 0.207024279757590 0.214886656338005 0.206120291763636 0.211836124707062 0.20564177136896 0.209703449036681 0.208463561537822 0.221883534868319 0.206027070179366 0.205747546059027 0.203632849422228 0.203632849422228 0.210947517720549 0.203892185337114 0.206245135910497 0.233299967516516 0.207065251717377 0.203911225530534 1 0|1 /|+ 21537559 21538057 21537834.333 21537422 21538105 + gene protein_coding_gene FALSE TRUE AT1G58160.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G60110.1); similar to myrosinase binding protein [Brassica napus] (GB:CAA70587.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.209465799310611 -1.68813797689245 0.119802330681868 1 0.660138693783808 3.81894233403768 -0.209465799310611 0.154984087025060
AT4G11180_at 1.50892672504762 1.28897136896849 1.40729194887486 1.28457654624843 1.14160431384955 1.26970160131282 1.33908393591604 1.56167039780893 1.51797564229151 1.67514332994803 1.16242864062989 1.49491408673601 1.50866292194629 1.59300082069830 1.52982965354141 1.19541625694406 1.36478927096799 1.42763204730741 1.49422679715032 0.192114704275252 0.192361798731793 0.193245228044267 0.188397691316506 0.195813635462426 0.188405170062597 0.190749921572315 0.189391925082665 0.202633918280118 0.190728715556881 0.195525155737471 0.190667383388719 0.191325786626227 0.189043673796489 0.192596476596992 0.194666255382256 0.198660579783423 0.197863878813955 0.189269864563781 4 4 + 6820060 6820529 6820283.727 6820029 6820743 + gene protein_coding_gene FALSE TRUE AT4G11180.1 disease resistance-responsive family protein / dirigent family protein similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT4G11210.1); similar to dirigent protein pDIR5 [Picea engelmannii x Picea glauca] (GB:ABD52116.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) -0.150866940907027 -1.68773558306752 0.119881144371984 1 0.659603670404293 2.83624475582486 -0.150866940907027 0.0622499243432805
AT3G25840_at 7.28419952571716 6.97409921316686 7.60585445214505 7.27914769833685 8.08327394723405 7.27766552588291 7.2535588185995 6.97212827757105 6.88415180357056 7.50225385691034 7.34440815304373 7.55077966634125 7.45224839816578 7.42816324031867 7.08088928924119 7.92122130011848 7.13948229769126 7.30998017992808 7.83224940423196 0.173326736055616 0.168621778484482 0.164461229839565 0.172803746147477 0.169255538466033 0.164461229839565 0.171753619490963 0.186335586728139 0.186131607975542 0.167957269881558 0.178088927563427 0.164461229839565 0.170113237744842 0.169236874946624 0.166751454746784 0.168266333882604 0.187465243659454 0.171506503634927 0.167013341634369 3 3|0 -|/ 9454260 9455215 9454585.8 9453900 9458791 - gene protein_coding_gene FALSE TRUE AT3G25840.1|AT3G25840.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53640.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13350.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99626.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53640.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13350.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99626.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.218833578918920 1.68749553664936 0.119928182424391 1 0.659284537633905 14.7460483925868 0.218833578918920 0.166987222138058
AT1G62450_at 2.10072288861410 2.05165724758365 2.14074133750576 2.04476577329788 1.89926194084417 2.19369506039678 2.42846867473211 2.05239652624643 2.19723168700950 2.34076707706836 2.10285023414924 2.03571895358354 1.84932346763520 1.94536936379368 1.90400341901570 1.68619793210399 1.82467388176770 1.93467453656934 1.89807336645024 0.233443755921274 0.218182636905632 0.223252613178336 0.224266852959078 0.213261559642126 0.215743924057370 0.219827005524380 0.223818130013681 0.220536717773986 0.223884922288168 0.216385763924967 0.213309132726818 0.212549977426135 0.214998299409813 0.212549977426135 0.220981831590568 0.219258118171107 0.221767341405817 0.216619016164354 1 1|0 -|/ 23119630 23120928 23120259.8 23119623 23121035 - gene protein_coding_gene FALSE TRUE AT1G62450.1 Rho GDP-dissociation inhibitor family protein similar to Rho GDP-dissociation inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G12070.1); similar to Rho GDP dissociation inhibitor 2 [Medicago truncatula] (GB:CAF02296.1); contains InterPro domain RHO protein GDP dissociation inhibitor; (InterPro:IPR000406) -0.161850604774163 -1.6869123004864 0.120042538600623 1 0.658509250533962 4.14181810636261 -0.161850604774163 0.0847331671355751
AT4G29490_at 7.85522221482709 7.86415029737914 8.14022128216933 8.18456810632588 8.39424667428437 8.01558227543173 8.01920846605007 7.76314042504238 6.89834947670082 7.06437411625466 6.6779927971767 6.7162647146079 6.97807982206834 7.12945627634233 6.90233407607426 6.97225240644584 7.39439513677689 7.03085591205751 6.93338037453696 0.129465899516671 0.128139921426182 0.132907144613627 0.130943653758321 0.130656202306921 0.128271503300715 0.132306018854828 0.128595849722260 0.132354116591035 0.127194346276720 0.128597243881441 0.125466664501951 0.124506233286745 0.128798582947991 0.129211236418347 0.124311913489924 0.131632381851464 0.131073990302192 0.130409496797565 4 4|0 +|/ 14488754 14491290 14490143.765 14487906 14491531 + gene protein_coding_gene FALSE TRUE AT4G29490.1 X-Pro dipeptidase similar to metallopeptidase M24 family protein [Arabidopsis thaliana] (TAIR:AT1G09300.1); similar to Os02g0224400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046335.1); similar to Chain A, Crystal Structure Of Human Prolidase (GB:2IW2); similar to hypothetical protein LOC415776 [Gallus gallus] (GB:NP_001073185.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24B, X-Pro dipeptidase/aminopeptidase N-terminal; (InterPro:IPR007865) 0.159030068628865 1.68675206553124 0.120073973217041 1 0.658296278331753 14.9998284086177 0.159030068628865 0.079492941913986
AT2G40030_at 2.89528065992915 3.01516925970511 2.71254492762727 2.88154961701016 2.34646219951498 2.79056540815983 2.44768180573033 2.99571624384749 3.10405890608579 3.16189800228667 2.82366024755328 2.98593187703850 2.91498715769777 2.39739193275413 3.11293026490006 2.7999674108113 3.07558189884722 3.04105683013761 3.08045996115291 0.138451796534976 0.133671939794385 0.135357827545789 0.138598326971603 0.133898690139349 0.138577223082581 0.136209709573275 0.138312682096607 0.138759668361285 0.138389380609256 0.138308932875812 0.135653240948452 0.136527807632172 0.137942802129414 0.136744991245610 0.135934323421126 0.135576066473312 0.144335377380716 0.138192825950318 2 2|0 +|/ 16725413 16730284 16727839.95 16721572 16730661 + gene protein_coding_gene FALSE TRUE AT2G40030.1 NRPD1b (nuclear RNA polymerase D 1b); DNA binding / DNA-directed RNA polymerase Encodes one of two alternative largest subunits of a putative plant-specific RNA polymerase IV (aka RNA polymerase D). Required for normal RNA-directed DNA methylation at non-CG methylation sites and transgene silencing. similar to NRPD1a (nuclear RNA polymerase D 1a), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G63020.1); similar to RNA polymerase IV largest subunit [Lycopersicon esculentum] (GB:AAY89359.1); similar to DNA-directed RNA polymerase alpha subunit [Spinacia oleracea] (GB:AAX12374.1); similar to putative DNA-directed RNA polymerase II largest subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD88247.1); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro domain RNA polymerase Rpb1, domain 5; (InterPro:IPR007081); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) -0.188607645799632 -1.68584012059872 0.120253017080037 1 0.657084401255091 5.76532663634518 -0.188607645799632 0.127228167810621
AT4G01320_at 9.11019487958565 9.12409339609079 8.92557034889947 8.84323067531395 8.94850190739647 8.69726903359555 8.7118487993199 8.65114549093451 8.54104143332226 8.07934813669504 7.77767415839344 8.12406888806651 8.0597838432575 7.97815321055981 8.00884750618965 7.6553422290818 8.221156549696 7.46333492940444 7.84440929128988 0.150949854756195 0.148491746802384 0.148407457995484 0.153291383822251 0.148508184330117 0.150439255884577 0.160568041046013 0.148810661074411 0.165741721826100 0.154746553547417 0.155791060768732 0.157943523804449 0.151283693888662 0.14838216765951 0.163252051603300 0.149677971501851 0.162062916402664 0.162481600423326 0.155624173031453 4 4|0 +|/ 547894 548773 548410.222 545796 549261 + gene protein_coding_gene FALSE TRUE AT4G01320.1 ATSTE24 CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum. similar to Os02g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047739.1); similar to CAAX peptidase [Hordeum vulgare subsp. vulgare] (GB:CAL26913.1); contains InterPro domain Peptidase M48, Ste24p; (InterPro:IPR001915) -0.144782719809632 -1.68553784254231 0.120312416510035 1 0.65668278545657 16.9094708754421 -0.144782719809632 0.047004602778992
AT2G40260_at 2.69514065209079 2.92319249919947 2.23702085145343 2.58742427471142 3.06161152231261 3.08709095503174 2.30165101980076 2.59022436903995 2.81576634681594 2.84251759950427 2.9105881347811 3.45812232447222 2.88999795703423 3.04749855747321 3.06627718034153 3.33865188719971 2.47315217171296 2.91253768672263 2.74404957868917 0.201750822743626 0.198762658473902 0.207091593176344 0.205643070960531 0.207394452514226 0.205491351920611 0.200890563653518 0.206356105959001 0.202070130322825 0.204493584304069 0.203021179126313 0.213966157875029 0.204392705277782 0.207478043427251 0.211846285980381 0.198762658473902 0.207799697031936 0.199183083890583 0.201904499778684 2 2 - 16823915 16824471 16824150 16823896 16825551 - gene protein_coding_gene FALSE TRUE AT2G40260.1 myb family transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G38300.1); similar to myb-like DNA-binding domain, SHAQKYF class, putative [Medicago truncatula] (GB:ABE91131.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.163530080820979 1.68540168836143 0.120339180174651 1 0.65650189979044 5.59186005752352 0.163530080820979 0.088022410867164
AT2G26600_at 8.6037301916369 8.87832077011471 9.10580151849805 9.05594759164295 8.92028096339816 8.54034982561154 8.37801429853765 8.39032353073877 7.75924277304013 7.46935365285514 7.23000647854711 7.10166679079726 7.78161400744322 7.67466644105401 6.3058556017485 7.47629762650063 7.84141269519344 7.4902739752106 6.92856787286663 0.175621535998569 0.180765904078101 0.174772214495135 0.183425815753288 0.181382623590372 0.184396674496110 0.177926350803462 0.172097950725788 0.189243085023737 0.181205650969858 0.180712698203467 0.183671004031547 0.174367266251240 0.189250864762144 0.176037855337925 0.173043433750609 0.176542947892633 0.173373463054599 0.177807298909191 2 2|0 +|/ 11324610 11325269 11324916.9 11323490 11325561 + gene protein_coding_gene FALSE TRUE AT2G26600.1|AT2G26600.2 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G15800.1); similar to beta-1,3-glucanase 1 [Ziziphus jujuba] (GB:AAY25165.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.160000273085939 1.68520761152796 0.120377338819375 1 0.656244075686723 16.1083189037636 0.160000273085939 0.0816085477356424
AT3G51800_at 9.74354081656246 9.71071753761852 9.59760647985842 9.56874407364534 9.46334888397459 9.28277270127284 10.0848733074699 10.0129806941956 9.13816026974106 9.38969665688632 9.27721292941995 9.71320116719113 9.2320110582776 9.27517190581896 9.97524064441767 9.14090447214188 9.09178285890566 9.1416382198611 9.15606752298232 0.085370048163169 0.0837482357044208 0.0837482357044208 0.0839195898950103 0.087179757101595 0.0844254189092519 0.0846789595378282 0.0871681537180086 0.0912985140814877 0.0868882419453851 0.0861837730919831 0.0839927982584442 0.0874000486534326 0.0844677137121546 0.086610939709456 0.0837482357044208 0.0893185531721282 0.0870647615233936 0.0893358347153424 3 3|0 -|/ 19222255 19223144 19222639.556 19222004 19224686 - gene protein_coding_gene FALSE TRUE AT3G51800.1|AT3G51800.2 ATG2 (G2p-related protein); metalloexopeptidase putative nuclear DNA-binding protein G2p (AtG2) mRNA, similar to MAP2A (METHIONINE AMINOPEPTIDASE 2A), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT2G44180.1); similar to cold-induced cell cycle-related nuclear protein [Ammopiptanthus mongolicus] (GB:ABF66654.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Proliferation-associated protein 1; (InterPro:IPR004545); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) -0.140994731903080 -1.68484705780832 0.120448258205677 1 0.655765136287219 18.9750081735951 -0.140994731903080 0.0344751263352481
AT3G23900_at 7.42184022267331 7.32618874352088 7.14904807585243 7.10845094615865 7.21577523821127 7.38905956283548 7.363198420007 6.69153204850174 6.13983914779198 6.5572788891717 6.64093788061956 6.94121675480273 6.39955838097351 6.95094647250293 6.79571427974965 6.95006683835334 7.14007815813171 6.30955688373095 6.53920393525072 0.183949323736998 0.182857343139558 0.179906314771912 0.187608255146502 0.182128229260199 0.191205276160828 0.180828915246201 0.185581612820473 0.210240339657628 0.199569000324604 0.191838340892014 0.185573904420031 0.18213336254969 0.179906314771912 0.183636542430270 0.184310232165768 0.193585412448500 0.193412442384067 0.200806963947637 3 3 - 8632594 8633052 8632904.9 8631613 8636052 - gene protein_coding_gene FALSE TRUE AT3G23900.1|AT3G23900.2 RNA recognition motif (RRM)-containing protein|nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to P0402A09.11 [Oryza sativa (japonica cultivar-group)] (GB:BAB62628.1); similar to Os01g0101600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041743.1); contains InterPro domain Filamin/ABP280 repeat; (InterPro:IPR001298); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.184397864562653 1.68456795231836 0.120503182695224 1 0.655394426802564 13.7971950473099 0.184397864562653 0.121380361600722
AT1G80350_at 5.77554741305675 5.61661935235673 4.94845162969732 5.18492366485731 5.41490795267585 5.69330821841359 5.65853831901505 5.9051835243365 6.10970877562094 5.76756650313429 6.1672413787698 6.25856857908926 5.51509089316163 5.94288307707627 6.11624107762482 5.77535856065197 6.00955188159987 5.91763327386630 5.68340628425829 0.187681954276268 0.180185067379629 0.194742358907355 0.191442437587626 0.179641471982297 0.193966928871831 0.181073332359408 0.180862437930879 0.196293855389244 0.189281281931957 0.183323554714935 0.183400751444566 0.189612675456663 0.189131894382936 0.179641471982297 0.186011986793499 0.181601395024608 0.187590407645833 0.185848815485315 1 1|0 -|/ 30210394 30211210 30210658.5 30210207 30213097 - gene protein_coding_gene FALSE TRUE AT1G80350.1 ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects. Identical to Katanin p60 ATPase-containing subunit (EC 3.6.4.3) (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) (AAA1) [Arabidopsis Thaliana] (GB:Q9SEX2;GB:Q8S9E4); similar to katanin, putative [Arabidopsis thaliana] (TAIR:AT2G34560.2); similar to katanin [Gossypium barbadense] (GB:AAP83638.1); similar to katanin [Gossypium hirsutum] (GB:AAP83637.1); similar to katanin-like protein [Gossypium hirsutum] (GB:AAP43505.2); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.159656858277378 -1.68454219193387 0.120508253146011 1 0.65536021341488 11.4328758149184 -0.159656858277378 0.0810808133926206
AT1G60985_at 0.379234846664051 0.419273938899617 0.659023836609845 1.1553743966022 0.733592625207205 0.622943736393576 0.992212454835918 0.470473409774202 0.275987227897867 0.970559563927374 1.09495703958103 0.97430333286598 1.41126767305046 0.773440006668783 0.859640580431261 0.937068275791482 0.757517986661108 0.842009692158588 1.17794480218178 0.225720094222830 0.239953513270885 0.225720094222830 0.232035915348841 0.2258409140135 0.232422769204601 0.225720094222830 0.229613831518402 0.228521667363646 0.228634381856068 0.236579162223245 0.238101629700466 0.231853895009034 0.246220257246422 0.234596944774551 0.234419892854621 0.236576836130098 0.225720094222830 0.238007446058412 1 1 + 22460484 22460828 22460707 22460414 22460983 + gene protein_coding_gene FALSE TRUE AT1G60985.1 SCRL6 (SCR-Like 6) Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). Identical to Protein SCRL6 precursor (SCRL6) [Arabidopsis Thaliana] (GB:P82625;GB:Q8L952); similar to SCRL4 (SCR-Like 4) [Arabidopsis thaliana] (TAIR:AT1G60986.1); contains InterPro domain Plant self-incompatibility response; (InterPro:IPR010682) 0.18777334744592 1.68438145118664 0.120539896265869 1 0.655146733748407 1.56123587465837 0.18777334744592 0.126273212316049
AT4G34630_at 9.69490731451158 9.83533605105104 9.96156807793785 9.99722535235285 10.1208413097276 9.4947607839306 10.3212013601203 10.3120506012029 9.21745432399113 9.60403394814917 9.02094650076642 8.79078198269537 9.47518950926917 9.3732712787551 8.60800183625819 9.33918797175921 9.57741292064682 9.2193425035601 9.3283976427479 0.119923310482760 0.120263399055347 0.124459084335840 0.123979864454421 0.128813593199153 0.129432778292215 0.126186299668895 0.128166243791096 0.124405429350291 0.124302687239122 0.129556584803266 0.122629918087293 0.121012692773096 0.124968485106704 0.132643192425132 0.121599968750285 0.133181035179774 0.124521610716672 0.125840678736750 4 4 - 16537127 16537661 16537404.818 16536870 16537751 - gene protein_coding_gene FALSE TRUE AT4G34630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48420.1); similar to hypothetical protein MtrDRAFT_AC149637g23v1 [Medicago truncatula] (GB:ABE88368.1) -0.177526721366579 -1.68399004401250 0.120616978980844 1 0.654626952975782 19.2466424153176 -0.177526721366579 0.111220743730503
AT4G30690_at 9.6357850958555 9.51670347744498 9.32170598453137 9.09390842055203 10.3849725475861 9.84545608577876 9.22321290214699 8.9027016277465 10.1353101776758 9.98327440583668 10.3895763433427 10.1484888896525 9.965100243406 10.0455818965987 10.1709440882011 9.98657304212846 9.7442441824428 10.0094933233305 9.9901925921642 0.131296658666233 0.129412326411358 0.136763500653199 0.134643603094387 0.129897453528595 0.138688576131837 0.127979940698116 0.129934292438247 0.137587874733837 0.135735470909905 0.130109077908034 0.125708908375284 0.131572661721165 0.13442400299056 0.131569541593289 0.125708908375284 0.138837234055733 0.135850184617723 0.129043923363196 4 4|0 +|/ 14960994 14962241 14961785.125 14960692 14962472 + gene protein_coding_gene FALSE TRUE AT4G30690.1 translation initiation factor 3 (IF-3) family protein similar to translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] (TAIR:AT2G24060.1); similar to Initiation factor 3 [Medicago truncatula] (GB:ABE79490.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) 0.181575588196251 1.68378760324095 0.120656864412482 1 0.654358141787809 19.5374354225536 0.181575588196251 0.117355773553297
AT2G03510_at 10.0765414639278 10.1222701460835 9.85103181691884 10.0167511301313 9.64722202055655 9.47280075978985 9.4652730781261 9.35274174301112 8.9796083607854 8.50484368800578 8.3565707611949 8.6753024978379 8.17453763778163 8.58361592659001 8.3928330340672 8.23169000441274 8.40870093870397 8.50507055013152 8.60891685411991 0.157788376698409 0.154749240425556 0.152049289628764 0.155739647610251 0.157065742177473 0.152066564885655 0.153933781652570 0.160672532964997 0.151318827450762 0.152399063952169 0.156303664554594 0.148167008896466 0.155123849515346 0.151108149787196 0.149410589741088 0.15207662380769 0.154864060605679 0.148902130586368 0.156408052543382 2 0|2 /|+ 1068045 1068858 1068409.5 1066603 1069146 + gene protein_coding_gene FALSE TRUE AT2G03510.1 band 7 family protein similar to SPFH domain / Band 7 family, putative [Medicago truncatula] (GB:ABE90939.1); contains InterPro domain Band 7 protein; (InterPro:IPR001107) -0.144502320700859 -1.68370073379545 0.120673983278366 1 0.654242797550284 18.3074939213900 -0.144502320700859 0.0466413881061350
AT3G43770_at 2.08599407693183 2.05176157789966 2.09451501108962 1.58900975482097 1.55665275477276 1.67733758168553 1.90841010106031 1.69181700292608 2.09318756808835 2.22515146913318 1.95748469891430 2.0252948345273 2.13737426209784 1.93973139532184 1.84276906182048 1.73776669966676 2.01968659135512 1.96963791317676 1.94096067444675 0.180552908026007 0.186957561789705 0.187311314700394 0.183458801781898 0.188746256096660 0.186738682711091 0.181040458877385 0.181246645230487 0.186288045152789 0.186616166068526 0.184662251921029 0.182145385042325 0.195660043165196 0.185913025999731 0.184897613146680 0.181935404193704 0.183905189557943 0.181768062131946 0.186104546798781 3 3|0 -|/ 15661615 15661938 15661766.75 15661574 15661987 - gene protein_coding_gene FALSE TRUE AT3G43770.1 similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45230.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39205.1); contains domain GAG-POL-RELATED RETROTRANSPOSON (PTHR11439) -0.168915984612479 -1.68335964560566 0.120741220561634 1 0.653789936261815 3.85201294231475 -0.168915984612479 0.0976164568349398
AT2G42390_at 8.74173636185951 9.10843667332953 8.78878446406236 8.81958243262747 9.07359438928583 8.77307033036643 8.4934863901576 8.40037646407695 8.52756267156086 8.15881089753403 8.64539353656314 8.49841969212286 8.5068609419632 8.69272965082015 8.45609051509366 8.55053782933362 8.18307239403532 8.63191020026323 8.44281401812999 0.124843953468279 0.125642998616917 0.128045107199934 0.124280531470421 0.135893434305059 0.128809563563006 0.135407985170469 0.12105356598942 0.148150813976874 0.132684557974626 0.124238533867895 0.126580824329381 0.134736245274804 0.135866057345902 0.130537771363300 0.124630643382916 0.132800051789084 0.130765524463653 0.125102685776801 2 2|0 -|/ 17658464 17659311 17658765.333 17658331 17659666 - gene protein_coding_gene FALSE TRUE AT2G42390.1 protein kinase C substrate, heavy chain-related similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G56360.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80506.1); contains domain LDL receptor-like module (SSF57424); contains domain N-LINKED OLIGOSACCHARIDE PROCESSING (PTHR12630); contains domain no description (G3D.4.10.400.10); contains domain GLUCOSIDASE II BETA SUBUNIT (PTHR12630:SF1) 0.160989957172867 1.68332384698616 0.120748279332765 1 0.653742409516779 17.2233947919371 0.160989957172867 0.083784518985041
AT2G34060_at 2.73681911443576 3.41498516065812 2.48913892581035 2.83828471815105 2.86172231402872 3.24674237493917 3.75848918636258 3.90615416618574 3.98362666980758 4.1059213031194 4.17167240572912 4.53773890623424 3.88734552465435 4.1499560250116 4.35735948790526 4.31859481333157 4.06650407599952 3.73407400330588 3.81375073754626 0.274023572825572 0.267183361702279 0.282996739943669 0.280651139628929 0.267183361702279 0.296454018000328 0.290111146199931 0.287172078580732 0.281419420409262 0.296282407582564 0.270435924902778 0.27286862141922 0.267183361702279 0.267183361702279 0.275033242354757 0.267183361702279 0.276813718054529 0.271391210999729 0.279240423526542 2 2 + 14393030 14393462 14393253 14391975 14393748 + gene protein_coding_gene FALSE TRUE AT2G34060.1 peroxidase, putative Identical to Peroxidase 19 precursor (EC 1.11.1.7) (Atperox P19) (ATP51) (PER19) [Arabidopsis Thaliana] (GB:O22959;GB:Q8RXZ2); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G14130.1); similar to Os03g0762300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051358.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:AAL34125.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.205000202615599 -1.68262683532041 0.120885789535001 1 0.652817157895169 7.21687794111936 -0.205000202615599 0.150055195465260
AT2G01080_at 3.73458433893571 3.44345288886973 2.87152777308991 2.94343190054795 3.82243428115014 4.04160952499551 3.11636892134774 2.83662214762149 2.97374102657806 3.18836124036847 3.40567019651024 3.11907611554866 3.17671005350199 3.25165893127235 3.49157384284817 3.18643551305505 2.63711745678829 3.34871485718680 2.90047672112309 0.220155747991639 0.220011468021595 0.220011468021595 0.220011468021595 0.222032433003484 0.224502782588007 0.220011468021595 0.223345160631656 0.231545346463701 0.220011468021595 0.220011468021595 0.220235270731365 0.223705407030035 0.223290649775578 0.220011468021595 0.220011468021595 0.223931613966556 0.226499772212785 0.232085952277887 2 2|0 +|/ 78208 79146 78480.3 77888 79334 + gene protein_coding_gene FALSE TRUE AT2G01080.1 similar to harpin-induced protein-related / HIN1-related / harpin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G65690.1); similar to Os03g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049630.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06852.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.159126876950643 1.68234960118628 0.120940522629643 1 0.652449200645799 6.46274361383418 0.159126876950643 0.0804701897348773
AT4G32810_at -0.0608328582268519 -0.223987116345063 -0.481801055631696 -0.176214401916527 -0.291591178505592 -0.109411615908236 -0.119847743032839 -0.260100201665925 0.43120116343106 -0.603739191792226 -0.0451503246193243 0.0309834638153687 0.466234513623382 -0.566349561593587 -0.93901669755858 -0.245360271262047 -0.0541332644450313 0.549908379841681 -1.35306015729824 0.323326801113406 0.323326801113406 0.323326801113406 0.360138973770712 0.347281024492994 0.336920146480968 0.323326801113406 0.323326801113406 0.323326801113406 0.323326801113406 0.34605883452184 0.323326801113406 0.346846684231479 0.337109180538274 0.323326801113406 0.323326801113406 0.337946738639339 0.329939973714304 0.331118138174983 4 0|4 /|+ 15830809 15831032 15830898.333 15828232 15831489 + gene protein_coding_gene FALSE TRUE AT4G32810.1 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching. similar to NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) [Arabidopsis thaliana] (TAIR:AT3G24220.1); similar to Dad1/CCD8 [Petunia x hybrida] (GB:AAW33596.1); similar to dioxygenase RAMOSUS1 [Pisum sativum] (GB:AAS66906.1); similar to decreased apical dominance protein [Petunia x hybrida] (GB:AAW59435.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) 0.154804837552762 1.68214847094596 0.120980244720707 1 0.652182272686816 -0.519919870818042 0.154804837552762 0.0719505145082888
AT2G37560_at 1.52464352638973 1.53550152641285 1.83534553213387 2.12393450446558 1.46437719381319 1.35249616230313 1.77337824451399 2.03900996747830 1.50844943871102 1.82367514116478 2.05926766216563 2.17744083684974 1.85867646280839 1.682769652562 2.27468530994559 1.57113471884801 2.17113712132506 2.13997212938030 1.64650571267024 0.207583307545874 0.207296551761914 0.215754840103871 0.211136176093579 0.206331663638540 0.208434478840667 0.20666332907028 0.204695688104853 0.213286434115874 0.205286561865570 0.204695688104853 0.214320495493371 0.215184881508165 0.208289593144387 0.210007859654186 0.210435053166268 0.206872128442721 0.204695688104853 0.206945112018952 2 2|0 +|/ 15767473 15768137 15767844.9 15765723 15768340 + gene protein_coding_gene FALSE TRUE AT2G37560.1|AT2G37560.2 ATORC2/ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT); DNA replication origin binding / protein binding|ATORC2/ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT) Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits. Identical to Origin recognition complex subunit 2 (ORC2) [Arabidopsis Thaliana] (GB:Q38899); similar to ori (GB:AAL10453.1); contains InterPro domain Origin recognition complex subunit 2; (InterPro:IPR007220) 0.154123543933569 1.68173749057576 0.121061447250753 1 0.651636898864675 3.53180029098096 0.154123543933569 0.0706094984570786
AT2G26460_at 5.1557790944356 5.3691735171133 5.66916511073444 6.03986382617855 6.21766836162839 5.8603190888508 5.7232670867036 5.3833644347853 4.91030681593661 4.77824978315902 4.15080963432292 4.63792872829385 4.66429295810068 4.73471108272091 4.47016679614162 4.58479428070009 4.60730973156248 4.73743054247827 4.57799191692871 0.234416004285538 0.240675124546596 0.24151968459464 0.238085963941049 0.253430052359609 0.237514197033640 0.248838147041381 0.234416004285538 0.238527994675663 0.234416004285538 0.234416004285538 0.238407856410118 0.244350782137477 0.234416004285538 0.241125263352012 0.234416004285538 0.242257093184785 0.239166703512837 0.237161482425743 2 2 - 11262140 11262764 11262447.909 11262010 11266051 - gene protein_coding_gene FALSE TRUE AT2G26460.1 RED family protein similar to Os11g0146700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065737.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96454.1); contains InterPro domain RED-like, N-terminal; (InterPro:IPR012916); contains InterPro domain RED-like, C-terminal; (InterPro:IPR012492) 0.178386180435293 1.68124034497257 0.121159739549680 1 0.650977281218182 10.3417983857029 0.178386180435293 0.112975279343037
AT3G15790_at 8.32681006317802 8.27079253738626 7.79157589961718 7.63880179163884 7.91867867409505 7.83704309504155 8.9364946810699 8.78053137238527 6.15312298794612 7.91322735568348 7.59738982406053 7.4608101076668 7.71869486218118 7.53645609993334 7.04118754774757 7.40427717337664 7.96881053247293 7.08518360995622 6.87280710651107 0.158606220330315 0.161587399394637 0.158424671633175 0.168185474668453 0.157961747675285 0.161952945189369 0.157617670772319 0.165503221179328 0.167937642446201 0.157802568404197 0.157310775603862 0.154110274788509 0.160136454447856 0.168570538528882 0.176862776846301 0.155560061483534 0.157390044546301 0.158786251106646 0.158943111685662 3 3 + 5343830 5344335 5344000.455 5343216 5344707 + gene protein_coding_gene FALSE TRUE AT3G15790.1 MBD11 (methyl-CpG-binding domain 11); DNA binding Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. similar to MBD10 (methyl-CpG-binding domain 10), DNA binding [Arabidopsis thaliana] (TAIR:AT1G15340.1); similar to methyl binding domain protein MBD109 [Zea mays] (GB:AAM93219.1); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739) -0.142625114389599 -1.68099852250753 0.121207576817239 1 0.650656467629538 15.4157511991622 -0.142625114389599 0.0414850734297182
AT4G38930_at 7.79905270845996 7.94052489792673 8.17093742565051 8.24456752634729 7.62546720885678 8.28280131723992 7.76773237613663 8.08540152285987 7.5611634951556 7.35849093268439 6.93767136235654 7.14268724575866 6.76227088173282 6.83275645087864 6.90919213948572 6.99680519037461 6.89831839718296 6.7292851128224 7.46905851225903 0.160240533069697 0.162798888466676 0.159721846826121 0.159141223034341 0.157004660898712 0.158262069703390 0.162531470803408 0.163811329903926 0.161082240225721 0.162291622545443 0.159262984688691 0.159415806581944 0.160434452611733 0.166330286617039 0.157146540331181 0.15966502490001 0.163025652129348 0.159210765290942 0.161546259705240 4 4|0 +|/ 18150739 18151336 18151131.444 18149528 18151787 + gene protein_coding_gene FALSE TRUE AT4G38930.1|AT4G38930.2 ubiquitin fusion degradation UFD1 family protein similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.3); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) -0.189507736307232 -1.68068292121510 0.121270034355798 1 0.650237813649135 15.1715744534049 -0.189507736307232 0.129321469127346
AT4G28330_at 2.00316625833334 1.63568629288772 1.77543949451013 1.38347517999778 1.83785317710420 1.53460802833740 1.99557606798273 2.14168056218106 2.09530429318337 2.52798475482293 2.13185461538412 1.98416886246999 2.26815903541247 2.61417813318496 1.96009639351468 2.12666927036827 2.59232538418525 2.45245547152455 2.29888456318639 0.182252306527184 0.183051134322308 0.182510697213826 0.177933437308054 0.179059492872488 0.18122030065212 0.186348488598026 0.184204124862640 0.175798700287431 0.176032277326553 0.193822738462447 0.176768119272850 0.176456928315465 0.177859553295986 0.184298541419228 0.175667038767869 0.182878211976006 0.182245182320768 0.176759870543853 4 4 - 14022545 14022844 14022692.636 14022393 14022993 - gene protein_coding_gene FALSE TRUE AT4G28330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28340.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA97787.1); contains domain Multidrug resistance ABC transporter MsbA, N-terminal domain (SSF90123) -0.176168066667098 -1.68034130268822 0.121337673083636 1 0.64978469588607 4.07525043241001 -0.176168066667098 0.109720163249251
AT1G17010_at 0.88449343657333 0.621544736643131 0.578680816349125 1.02921880937688 0.760099045023603 0.73545920518302 0.596404336485878 0.610896027266149 0.725007305341068 0.527723696588425 0.438727034264816 0.565481518565086 0.717097570640653 0.907070628345432 1.09342525687122 0.411288892243417 0.988564915539507 1.09670382056517 0.385429956546568 0.209084209073096 0.208596263060989 0.218296881464194 0.217688929185304 0.208596263060989 0.208948388691665 0.210891467257886 0.211007983263296 0.215639327444778 0.214892485210466 0.211658483972107 0.212257726703658 0.213424958454921 0.215661046580825 0.216288830966747 0.210066288901381 0.216931529185521 0.214847609016169 0.210582066208321 1 1 + 5818481 5819098 5818763.727 5817560 5819345 + gene protein_coding_gene FALSE TRUE AT1G17010.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to SRG1 (SENESCENCE-RELATED GENE 1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G17020.1); similar to Os01g0351800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042986.1); similar to putative ethylene-forming enzyme [Oryza sativa] (GB:AAL79802.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.164385568272547 1.68029610968083 0.121346623590250 1 0.649724756350552 1.38877385534002 0.164385568272547 0.0904106916728239
AT4G24670_at 3.63402536417137 4.37259478809025 4.65815592646695 4.38474680395065 5.44423814974049 5.12117862792609 7.17986834575157 7.24767125018578 4.97065586334843 5.23593328398473 5.29705322798767 6.13001579802948 5.52752388714726 5.55826229207166 5.52443579923309 6.16151998723216 5.44744636501382 4.77077319654563 5.54818105681762 0.236678936570230 0.220094278593167 0.220617239567641 0.216914174572323 0.229129772464544 0.240201265328222 0.229197008961824 0.232338544452778 0.235517972255772 0.228890539286275 0.224134848655235 0.225822825927126 0.21933587209341 0.230568434777914 0.221429203683908 0.223743716583008 0.240936181251609 0.218817200215398 0.219123198783912 4 4|0 -|/ 12727953 12728681 12728367.778 12727844 12731284 - gene protein_coding_gene FALSE TRUE AT4G24670.1|AT4G24670.2 alliinase family protein similar to alliinase family protein [Arabidopsis thaliana] (TAIR:AT1G23320.1); similar to Alliinase EGF-like; Allinase, C-terminal [Medicago truncatula] (GB:ABE79686.1); contains InterPro domain Allinase, C-terminal; (InterPro:IPR006948) -0.202960654460681 -1.68006131518831 0.121393134287266 1 0.649413362454602 10.6571693506393 -0.202960654460681 0.147777135067632
AT2G34670_at 2.91620841822309 3.29392282028313 2.95897008612635 2.96694688043423 2.88257206180076 3.15698222002307 2.79963556321193 3.19772232808166 2.69479156325419 3.45106476196888 3.672349562747 3.53992439783669 3.45766947224939 3.18684431119025 3.88775279702774 3.3710258613452 3.74809446355992 3.46186359754499 3.2516100208577 0.213017059567913 0.206921547851158 0.213051783946631 0.211828367921361 0.224328986660337 0.209106613267901 0.225988135613658 0.208204254507256 0.216888827916387 0.204654057408318 0.206075005900244 0.206595666054422 0.206823098218762 0.205130211021673 0.20700864556899 0.203806156691921 0.206560312551996 0.207893358073991 0.220590952456092 2 2 - 14619831 14620557 14620188.364 14619665 14622812 - gene protein_coding_gene FALSE TRUE AT2G34670.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G02110.1); similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G51290.1); similar to hypothetical protein MA4_106O17.26 [Musa acuminata] (GB:ABF69980.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868); contains InterPro domain Steroid nuclear receptor, ligand-binding; (InterPro:IPR008946) 0.173848652778439 1.67978778547017 0.121447338150761 1 0.649050626592295 6.35820971725531 0.173848652778439 0.106186461023671
AT4G21280_at 12.5735168908220 12.4999915908714 12.1153116499435 12.1462839816814 12.5220895998975 12.1493336380817 13.1155950712189 13.0563502630530 13.3192362760853 13.0604299570461 13.5315235757851 13.6198257569062 13.1770070500879 13.2776463333451 13.6037329459144 13.4842098166769 13.0979349511327 13.3514407331830 12.9776240197950 0.0770176558549787 0.0767072994284472 0.0823929562581464 0.0788130077873118 0.0767499236592896 0.0828750932741129 0.0773058155457344 0.0754157305944446 0.0811719695880231 0.0754157305944446 0.0765666034485221 0.0754157305944446 0.0769088490368808 0.078170453052365 0.0783134636382929 0.0760496408445821 0.0786375658965243 0.0790069362818978 0.075968896435834 4 4|0 +|/ 11334540 11335555 11335000.6 11334412 11335783 + gene protein_coding_gene FALSE TRUE AT4G21280.1|AT4G21280.2 PSBQ/PSBQ-1/PSBQA; calcium ion binding Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. Identical to Oxygen-evolving enhancer protein 3-1, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (PSBQ1) [Arabidopsis Thaliana] (GB:Q9XFT3;GB:O49568); similar to PSBQ/PSBQ-2 (photosystem II subunit Q-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G05180.1); similar to Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (GB:P12301); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797); contains InterPro domain Twin-arginine translocation pathway signal; (InterPro:IPR006311) -0.152145171093408 -1.67970181448162 0.12146437900432 1 0.648936624642406 25.7783150338733 -0.152145171093408 0.066760131262278
AT3G23020_at 1.03465493307179 1.43243342909452 0.730879653349525 1.05655158609196 1.3201096791682 1.02619186034328 0.81527506143686 0.607116379073199 0.446909487962019 0.828755109645181 0.976412374402528 0.555752393728104 1.28362098030573 0.673842339110805 0.834830990276053 0.763589955841827 1.28344542338170 1.05878207544706 0.641516219683377 0.188385026937627 0.194452320559558 0.185108907097678 0.192028622804042 0.187652979440847 0.194802799091158 0.184069062408030 0.189502793215977 0.191728906897119 0.188910942630309 0.190275391769435 0.183658279362415 0.183658279362415 0.183658279362415 0.188624761481759 0.184601417511489 0.186412848543181 0.188400031522905 0.196686361213715 3 3 - 8177225 8177782 8177458.818 8177222 8179750 - gene protein_coding_gene FALSE TRUE AT3G23020.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G73710.1); similar to Os03g0162900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049054.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06857.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE86686.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.175393769100341 1.67967687646700 0.121469322525225 1 0.64890355615505 1.78682399219963 0.175393769100341 0.108626463607510
AT3G06030_at 1.92087500181921 2.17110224917342 1.96076855418438 1.93252712738001 1.61117812495468 1.91056513589779 2.04600706760405 1.98227215803961 2.19533850444277 2.39339522978698 2.44271003861982 2.3471955121414 1.9358879458809 1.83616241812931 2.92260971070185 2.105947597264 2.01985217496942 2.43142080911719 2.56589777521377 0.196852576149294 0.190561955482450 0.198068757056659 0.198304601130399 0.191038633102004 0.196354907190412 0.190609877811588 0.200778843777800 0.204112404445717 0.189552637954211 0.194817330878588 0.189552637954211 0.191286000367421 0.190124554328492 0.194796190519250 0.193223944784733 0.191210735662526 0.200359757232745 0.197786802968932 3 3|0 -|/ 1818908 1820002 1819437.4 1818749 1822846 - gene protein_coding_gene FALSE TRUE AT3G06030.1 ANP3 (Arabidopsis NPK1-related protein kinase 3); kinase NPK1-related protein kinase 3 Identical to Mitogen-activated protein kinase kinase kinase 3 (EC 2.7.11.25) (Arabidopsis NPK1-related protein kinase 3) (ANP3) [Arabidopsis Thaliana] (GB:O22042;GB:Q9SFG7); similar to ANP1 (NPK1-RELATED PROTEIN KINASE 1S), kinase [Arabidopsis thaliana] (TAIR:AT1G09000.1); similar to mitogen-activated protein kinase kinase kinase [Vitis vinifera] (GB:AAS19278.1); similar to protein kinase [Nicotiana tabacum] (GB:BAA05648.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.152979138758191 -1.67959993287542 0.121484576364815 1 0.648801528560662 4.26196215021539 -0.152979138758191 0.0685929780146022
AT4G21130_at 1.11751250760687 1.10277088143106 1.76471213143902 1.64106758234305 1.47009340640436 1.42626824975259 1.69703809864917 0.9522645181206 1.44208350835319 1.15025173152779 1.19483504934691 1.19153838280546 1.45251470492378 1.02398254446443 1.58818723497137 1.43172436768123 1.35179567762251 1.73491713093888 1.45333610323152 0.188655797386122 0.183653653639586 0.183772154009411 0.184145066603520 0.185039803825861 0.180992648924789 0.194526798992400 0.183776917249207 0.185271509332029 0.18869284099276 0.187974638581120 0.180903184266669 0.188524754752871 0.199003579611393 0.191523155863902 0.185780657395544 0.180903184266669 0.196443653464236 0.186278871405907 4 4|0 +|/ 11275659 11276261 11275960.667 11274307 11276310 + gene protein_coding_gene FALSE TRUE AT4G21130.1 EMB2271 (EMBRYO DEFECTIVE 2271); nucleotide binding similar to man and yeast U3-55K genes, involved in processing of pre-ribosomal RNA. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G05410.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG06962.1); similar to Os03g0625900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050698.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.190384306628161 1.6785473877577 0.121693412016545 1 0.64740610720377 2.75633792245092 0.190384306628161 0.130895420224546
AT1G35550_at 3.65769040120789 3.7117077224679 4.26422225591532 3.7080800415642 2.76118952963368 4.05314903553070 3.2632241285384 3.89654641001505 3.6715020397709 3.70332846190225 4.22925968316986 4.44880563291766 3.85944466573883 4.03876488312046 4.57037932173836 4.00629992569983 4.42515918929681 3.84462878337255 3.52861991055231 0.24255713183792 0.239283542701095 0.235585828592606 0.240187306240634 0.239293344715723 0.235323443512703 0.23511122715393 0.232959173251756 0.243482447234982 0.239994754035525 0.236480499446289 0.240088307184198 0.242044146138657 0.238434622363407 0.235922686084117 0.232230793285690 0.238628063823467 0.234808364682479 0.237830853252081 1 1 + 13112703 13112990 13112849.091 13112484 13113114 + gene protein_coding_gene FALSE TRUE AT1G35550.1 elongation factor Tu C-terminal domain-containing protein similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.1); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT1G07920.1); similar to translation elongation factor 1A-8 [Gossypium hirsutum] (GB:ABA12224.1); contains InterPro domain Elongation factor Tu, C-terminal; (InterPro:IPR004160); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001) 0.303863669996819 1.67793474895878 0.121815113209281 1 0.646594117930845 7.57063930629595 0.303863669996819 0.267114148667868
AT2G40990_at 2.4416314237278 2.47810115458414 2.70068803333931 2.60861988310561 1.840536020939 2.69788938207713 1.88533832554603 2.13344502531297 2.59346737007584 2.19854645055688 3.19369862224393 1.98555236129728 2.29870377391572 2.11709695334758 2.47690447319696 2.57979172975344 2.88302076492074 2.50453993353276 2.15352616219007 0.249724142017265 0.25184681704557 0.247387056496639 0.260337130643164 0.262138487993338 0.253947551714094 0.26431135591967 0.247387056496639 0.251253116198901 0.247961339388046 0.250108457172489 0.247387056496639 0.251578912884965 0.247387056496639 0.259814187053793 0.249376223086323 0.254432322697001 0.2545231500322 0.247646482054213 2 2 - 17112217 17113066 17112508.1 17112175 17114258 - gene protein_coding_gene FALSE TRUE AT2G40990.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT3G56920.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE79847.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.208518964912158 1.67789551795568 0.121822910177816 1 0.646542126874179 4.75832794147916 0.208518964912158 0.155404466547707
AT2G25060_at 2.32431904092686 2.46456538043661 1.66809614483154 1.90748862754254 2.12648282483832 2.03677629702275 2.34923071792460 2.53684171516914 2.56896652303846 2.55917286106933 2.35827787034961 3.25583530335575 2.29928790804072 2.55770894295206 3.12625093535301 2.95884791276344 2.3925336412619 2.71453000243412 2.43766854644537 0.235295299326004 0.235125828459361 0.236504640924403 0.252569494736641 0.236170390485251 0.247868078448047 0.228682861870294 0.224009423690742 0.240556920515718 0.232380203697523 0.224887396845879 0.228023670845447 0.240503247796671 0.236788412495199 0.229448261076563 0.232957704159094 0.225372161590235 0.229114792668535 0.227845095278115 2 2|0 +|/ 10669438 10669979 10669725.8 10669320 10670182 + gene protein_coding_gene FALSE TRUE AT2G25060.1 plastocyanin-like domain-containing protein Identical to Early nodulin-like protein 1 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9SK27;GB:Q680Y2); similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G31840.1); similar to Blue (type 1) copper domain [Medicago truncatula] (GB:ABE93906.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.149027576171370 -1.67779126260324 0.121843632579115 1 0.646403965278773 4.79164761429398 -0.149027576171370 0.0600035557834982
AT1G34160_at 2.08924166333360 2.65838286400203 2.37684773888316 2.27357255311222 2.33736651045770 2.07082856801416 2.16434873331045 1.99835592932298 2.18326156915213 2.66090208249886 1.66121790108466 1.85638721433718 2.08391262241380 2.26679362131245 2.09628866526661 2.24820110383723 2.43822629544131 2.20571592265637 2.65975134261401 0.207662264934254 0.204141960280530 0.204521632784728 0.208331088796414 0.203277697930870 0.207161526048923 0.212087044381557 0.209861809714596 0.204813039639863 0.206410102217048 0.206246916710978 0.207640390437918 0.203277697930870 0.204734616822815 0.207751806776346 0.205117784614855 0.206229291544974 0.211774006650823 0.206305869334649 1 1|0 +|/ 12442474 12442993 12442718.5 12441371 12443234 + gene protein_coding_gene FALSE TRUE AT1G34160.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Os12g0270200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066547.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.178570267335044 -1.67724737409418 0.121951790031035 1 0.64568326857464 4.55031702824555 -0.178570267335044 0.113898836857170
AT3G56910_at 10.8287475654260 10.9831915415954 10.5665610761133 10.3930360317028 11.0134833330906 10.7935295420896 11.2483289890401 11.2089891499424 11.8515270131657 11.6868318504778 11.8629487592313 12.1640604981947 11.6520941555081 11.7246622261196 12.0616650273646 11.8498652820523 11.2791966730790 11.7661630924302 11.6033973069055 0.0720931654444036 0.0731859075664706 0.075366411102139 0.0900540981435555 0.073944109236689 0.0790282929569316 0.0770497445707378 0.0727325329873369 0.080208355785121 0.0720931654444036 0.0752935985789449 0.0733380330963786 0.0720931654444036 0.0756385545250614 0.0737032784202093 0.073570595776335 0.084674782880518 0.075054871492946 0.0720931654444036 3 0|3 /|- 21080563 21080853 21080721.4 21080390 21081335 - gene protein_coding_gene FALSE TRUE AT3G56910.1 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) Identical to Plastid-specific 50S ribosomal protein 5, chloroplast precursor (PSRP- 5) (PSRP5) [Arabidopsis Thaliana] (GB:Q9LER7;GB:Q94B31); similar to Os01g0278900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042743.1); similar to 50s ribosomal protein l18, chloroplast precursor (cl18). [Medicago truncatula] (GB:ABE79862.1) -0.147249287510394 -1.67698955138312 0.122003090468060 1 0.645341677514735 22.6339837475069 -0.147249287510394 0.0557792459532472
AT1G23330_at 5.44061025613874 5.9660591525683 5.72192873399587 5.69407248544374 5.75937959986364 5.10450232607971 6.27202090731656 6.53199243245522 4.1403151695294 4.74694374608433 4.41081515576754 4.22129434946322 4.73318893501846 4.3633186971135 4.26610992521573 4.84075743982634 4.76030926187659 4.80290724433656 4.54955394896681 0.259531777889483 0.262328065927455 0.270336983716065 0.257558448210586 0.266667098257554 0.281045553587573 0.263002403221679 0.265545088829926 0.259791079908522 0.257419126986437 0.264945030947667 0.257419126986437 0.262045026568588 0.267420451304316 0.263765126191182 0.266876954059886 0.270806086352790 0.260618240588954 0.257419126986437 1 1 - 8279902 8280623 8280350.636 8279577 8281880 - gene protein_coding_gene FALSE TRUE AT1G23330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10740.1); similar to Os05g0408300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055523.1); similar to lipase [Clostridium tetani E88] (GB:NP_781602.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.205899948111782 -1.67671793099951 0.122057157127172 1 0.64498183720962 10.3257083605348 -0.205899948111782 0.152182066431547
AT1G64580_at 2.31952799832171 2.44347583048424 1.89602621669706 2.11127019777621 1.91839900154305 2.29595367472948 2.74234644741650 2.46190398534982 2.23290634815912 2.32096526849347 2.52959908182265 2.14945410330783 1.90710317580792 2.27181522636585 2.43821416343575 1.92193782614326 2.08385973802711 2.70176288884613 1.87799203843011 0.186626869008452 0.184711853215452 0.18712922485457 0.187906294639337 0.188281921813297 0.187522398362293 0.186652205300815 0.187786786382807 0.184711853215452 0.188634676041485 0.184711853215452 0.185925476538683 0.198475646249622 0.189058480625564 0.197815738791340 0.193475648932453 0.192725573045406 0.186024843329523 0.187979485384795 1 1 - 23988745 23989316 23989011.091 23988741 23992412 - gene protein_coding_gene FALSE TRUE AT1G64580.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.164943784465644 -1.67644066297656 0.122112370003384 1 0.644614548184773 4.47082433262166 -0.164943784465644 0.092043046938173
AT1G10710_at 0.887711276673944 0.842423578816774 1.13831665525906 1.07480899291886 0.647978283016176 0.83878776899041 0.731470803017425 0.878080993087867 1.46283243703412 1.56805330040073 1.16071863672910 0.889040629004705 1.06925950223592 0.877549019176727 1.09725276980559 1.27476791049832 1.02665345715433 1.04263964213669 1.26111347633671 0.205273234750777 0.210087857196593 0.214398282326295 0.210675195074879 0.206398862897134 0.205273234750777 0.209767698828321 0.211266481151195 0.221678270914121 0.223399966564518 0.20739332583052 0.206078694909767 0.208631061446708 0.208377164718038 0.215699346673796 0.207519643692857 0.216324635112474 0.23346071156914 0.219050982420069 1 1|0 +|/ 3559170 3559919 3559613.444 3558359 3561635 + gene protein_coding_gene FALSE TRUE AT1G10710.1|AT1G10710.2 Encodes a Maternally expressed gene (MEG) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10717.1); similar to poor homologous synapsis 1 protein [Zea mays] (GB:AAQ84720.1); contains domain PH domain-like (SSF50729)|similar to poor homologous synapsis 1 protein [Zea mays] (GB:AAQ84720.1); contains domain PH domain-like (SSF50729) -0.142939973300363 -1.67637233848212 0.122125979002454 1 0.644524045835704 2.12264809418916 -0.142939973300363 0.0437753074130966
AT4G30130_at 1.40651259481090 1.52549177057127 1.90400169306906 1.88325214204158 1.25908442269443 1.39654990162473 1.22915898361279 1.44988417490358 1.75184432710981 1.593392846647 1.53397074669160 1.48171642688977 2.06556923596972 1.33354299274192 1.94788383406466 1.57738991535636 1.99525387637479 1.76581795379509 1.54728268480791 0.183919248063183 0.186854818269590 0.184659869855263 0.188265217858599 0.190581276531953 0.181499126525888 0.187610273558382 0.184067047966445 0.182481906822868 0.188285807525684 0.199396015580903 0.180645510022888 0.182198038295154 0.182417998979364 0.190034650425325 0.180645510022888 0.191673995109498 0.203503184174829 0.186563044544899 4 4 + 14737208 14737740 14737437.818 14734825 14737984 + gene protein_coding_gene FALSE TRUE AT4G30130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19090.1); similar to Protein of unknown function DUF630 [Medicago truncatula] (GB:ABE84030.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.144881664381697 1.67618444389751 0.122163411168442 1 0.644275171942473 3.17848349821124 0.144881664381697 0.0496166028567768
AT3G57140_at 1.6023021897345 1.72291786986341 1.60577712394489 1.37658455095507 1.80966027041171 1.74960537989134 1.74364759163663 1.19487395149281 1.76357506239041 0.902373274298415 1.91726321100771 1.31487836013358 1.57951839711572 1.41137448879007 2.0683871033036 1.47107983447829 1.81546911293597 1.41078955184564 1.37509780569182 0.235207065591017 0.242475380016034 0.236851283430527 0.238461588849998 0.240875636951347 0.242267203477976 0.232282555199598 0.23648037024012 0.240208970951205 0.237245174372242 0.231946017097171 0.237403757059092 0.233631099427853 0.247147918034646 0.238476208963927 0.231946017097171 0.236606962410430 0.237577813017611 0.241733824094618 3 3 - 21161732 21162287 21162066.636 21161401 21164575 - gene protein_coding_gene FALSE TRUE AT3G57140.1|AT3G57140.2 SDP1-LIKE (SDP1-LIKE) similar to SDP1 (SUGAR-DEPENDENT1), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT5G04040.1); similar to P0460E08.35 [Oryza sativa (japonica cultivar-group)] (GB:BAB61223.1); similar to phospholipase, patatin family, putative [Medicago truncatula] (GB:ABE78088.1); similar to Patatin [Medicago truncatula] (GB:ABE94194.1); contains InterPro domain Patatin; (InterPro:IPR002641) 0.173025528638345 1.6758607410376 0.122227922919341 1 0.6438464507303 3.08597631011373 0.173025528638345 0.105525957900643
AT4G04480_at 1.11470358438733 1.60842685189296 1.35580913181771 1.73108610940385 1.61809183656809 1.28619506012709 1.52680150901830 1.68038992573091 1.38835180019549 1.74497795381974 1.14958547695246 1.16687916950772 0.343016828407058 1.50050146662009 1.07040346063553 1.09163168998681 0.460421097551812 1.66667066798036 1.1943967397316 0.216946251492746 0.214074655021909 0.214975371744146 0.211865332948680 0.208698943412754 0.219915589187345 0.208698943412754 0.210363016815008 0.208909527355255 0.217970452352381 0.228218786737611 0.212420037771097 0.219362055131674 0.208698943412754 0.211195716552718 0.20879293417124 0.217857645873366 0.211860902802274 0.216998171812875 4 4 + 2230259 2230811 2230545.545 2229647 2230843 + gene protein_coding_gene FALSE TRUE AT4G04480.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G22030.1); similar to Os02g0225900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046342.1); similar to Os02g0225500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046341.1); similar to F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22103.1) -0.185610849494284 -1.67546608337302 0.122306616574266 1 0.643323816917857 2.7395451161787 -0.185610849494284 0.124592188796994
AT3G48250_at 1.43306683507573 1.88682937978861 1.69665145171258 1.80565818986559 1.43093017933774 1.41349129179632 2.46615158346130 1.85438721759609 1.29470584224666 1.51926874649274 1.14883061570230 1.5131452916664 1.02121799916594 1.42673386448337 1.66156988617679 1.37836070243126 1.48954689629964 1.54156252494744 1.55864596549697 0.203349516321584 0.202523838496365 0.211002379345949 0.215500287114191 0.206208072950402 0.219881820506337 0.203881571125602 0.210067403059473 0.210576692678904 0.202523838496365 0.209673257002214 0.202523838496365 0.210289419557230 0.202523838496365 0.208519753744574 0.207445914302092 0.210823945566023 0.204828106226498 0.203932599772059 3 3 - 17881058 17881594 17881292.909 17881049 17882914 - gene protein_coding_gene FALSE TRUE AT3G48250.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02490.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96873.1); similar to Os01g0970900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045530.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.191672593969345 -1.67546560463923 0.122306712059901 1 0.64332318298578 3.17597634475654 -0.191672593969345 0.133189447487076
AT1G80070_at 10.0185868176601 10.1833533735346 9.78279034983579 9.90255949910158 10.3353134057803 9.9514058695454 9.95241566863094 9.95746067891954 10.0121297499274 10.0990968279091 9.76562913790795 9.85255287595927 9.87045763340098 9.70129553175072 9.59254279064918 9.87289933786862 9.79486015928779 9.9021971069852 10.1006527168822 0.0959072903904426 0.096994529424943 0.109534121905784 0.106551030062035 0.100576731035480 0.101064843077309 0.100630444959212 0.100792235209139 0.111438401997715 0.0949889835030198 0.096130481133532 0.0950639293287493 0.0957987279218663 0.104175087172598 0.101594776721715 0.100233955478090 0.111741425337303 0.096588208127005 0.0980068671336092 1 1|0 +|/ 30131758 30132440 30132093.4 30122945 30132704 + gene protein_coding_gene FALSE TRUE AT1G80070.1 SUS2 (ABNORMAL SUSPENSOR 2) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT4G38780.1); similar to PREDICTED: similar to Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) [Rattus norve (GB:XP_213385.3); similar to putative splicing factor Prp8 [Oryza sativa (japonica cultivar-group)] (GB:BAD67606.1); similar to PREDICTED: similar to splicing factor Prp8 [Gallus gallus] (GB:XP_415805.2); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain PRO8NT; (InterPro:IPR012591); contains InterPro domain PRO, C-terminal; (InterPro:IPR012984); contains InterPro domain PROCN; (InterPro:IPR012592) -0.1557544817336 -1.67509386577810 0.122380877138506 1 0.642830962239985 19.9428260845256 -0.1557544817336 0.0752147243748496
AT3G15130_at 1.63986321343142 1.19561878558994 1.40707587169494 1.41629042227749 1.55865301729725 1.42213373393117 1.25490744578518 1.14102748802016 1.15670862416630 1.60194304303628 1.32229981669166 1.26992367185735 1.82078816235785 1.5082637270739 1.32076727871879 1.25647574679480 1.35286544383624 1.36316829460792 0.918703859921154 0.203026668603392 0.201280804637279 0.203714548102849 0.206103119749528 0.200224040914624 0.207053425452853 0.202436690461992 0.200224040914624 0.216905719922230 0.206517533452933 0.208725694873847 0.211484129813623 0.21144395572615 0.207768782845587 0.202247798634323 0.211055507021268 0.200886343954197 0.208297285614507 0.215806634863279 3 3 - 5097195 5097654 5097466 5097160 5099229 - gene protein_coding_gene FALSE TRUE AT3G15130.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to Os04g0686500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054327.1); similar to H0723C07.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86042.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.15960893506397 1.67429088164894 0.122541216214313 1 0.641767934407331 2.69324834397856 0.15960893506397 0.082821470581792
AT3G49370_at 2.90288286875399 2.53918285682181 2.92170880621093 2.71397167753804 2.29674958514838 2.16029101251397 1.41748771706372 1.54475421397224 2.38540784768664 2.03089265955370 2.04592442615799 1.63614862660038 1.88247827971177 1.75026295164512 1.86832263458496 2.13452123499484 2.40078554190295 2.04138812557236 1.81329285490946 0.211652306624412 0.205059033716791 0.200734276561104 0.201616573593196 0.20886955770557 0.206484134525515 0.207205878466257 0.206265414700380 0.208822608887379 0.20502656254921 0.208334978362249 0.200801909180016 0.205019841048837 0.208169723465571 0.212664192630308 0.204990620058047 0.224308335474485 0.207760439968144 0.200734276561104 3 0|3 /|- 18315960 18316922 18316379.75 18315727 18318891 - gene protein_coding_gene FALSE TRUE AT3G49370.1 calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT5G24430.1); similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT2G46700.1); similar to calcium/calmodulin-dependent protein kinase CaMK1 [Nicotiana tabacum] (GB:AAL30818.1); similar to putative calcium/calmodulin-dependent protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD54109.1); similar to serine/threonine protein kinase pk23 [Lycopersicon esculentum] (GB:AAL87457.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.157775606564793 1.67422831797105 0.122553716729233 1 0.641685121541796 4.33538364143433 0.157775606564793 0.0793508221178554
AT1G68680_at 5.86488152724379 6.51620868903957 6.256442599293 6.16327987389998 6.88707594725797 6.05189597323196 6.57892090289184 6.74621684252687 5.37089754961427 5.52181933560626 6.5785067569047 6.23034236069763 6.02885315791856 5.98819673863516 6.0740847278136 6.09088304173987 5.82666879525076 5.87302198074679 5.70987315391271 0.242476003739464 0.224891028968267 0.230399579716660 0.228217533994146 0.227462061061936 0.230125533846491 0.238940869933692 0.236625729040807 0.263179846240869 0.232045605723452 0.225732581564629 0.229508458379631 0.223725545732986 0.231227733985738 0.225333975478774 0.223725545732986 0.22502266533568 0.256636822437628 0.223725545732986 1 1|0 +|/ 25789293 25789426 25789361.222 25789169 25790587 + gene protein_coding_gene FALSE TRUE AT1G68680.1 similar to hypothetical protein MtrDRAFT_AC152406g4v1 [Medicago truncatula] (GB:ABE92599.1) 0.232619811623754 1.67359823263407 0.122679674115718 1 0.640851200061658 12.1933734817604 0.232619811623754 0.186258589592007
AT2G42370_at 1.78002697690291 1.93626645503444 2.15030634206942 2.23107392316293 2.33644749980651 2.08554623993032 2.21085428339444 2.02091368737930 2.38443045670194 1.99804016752471 2.81801195487779 2.5507398348078 2.46914784784422 2.42861843289563 2.24403946712773 2.12844732187485 2.32097185288734 2.53923150729057 2.67326936641885 0.161705185525584 0.164975090392646 0.162401858387764 0.161705185525584 0.162769472970769 0.164191957947960 0.166177113314381 0.164439816091753 0.178038775316835 0.164998341048397 0.164608203730574 0.171938616307257 0.167774738652292 0.163057665815307 0.165986895713033 0.16827705474486 0.166103943999711 0.164800776598738 0.172965882458517 2 2 + 17652017 17652563 17652303.182 17650412 17652611 + gene protein_coding_gene FALSE TRUE AT2G42370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58110.1); similar to Os06g0538200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057797.1) 0.149657923900049 1.67355343430057 0.122688633932042 1 0.640791915836172 4.48858660479299 0.149657923900049 0.0623868780941919
AT4G30996_at 7.3943064052359 7.78088699174831 6.960615287281 7.06096090560083 7.63286613945024 7.46694831049696 7.97515691393648 7.9845210602527 8.2419328791723 8.13069278018651 8.70460069963797 8.74611525292738 8.08589497337207 8.29119530669396 8.71102070394411 8.03139927663024 7.60809574941299 8.33729985758719 7.99288763445172 0.157163223689445 0.147309007386638 0.176183130097431 0.160036560857260 0.153804300311147 0.157053761904984 0.149223792243513 0.147957097369933 0.158217518203252 0.154681483496271 0.152654224226395 0.154484773426908 0.150009033397259 0.14821679767386 0.164689001880301 0.158188586970041 0.158464193421244 0.147309007386638 0.156626071049799 4 4 + 15101496 15102431 15102082.364 15101301 15102690 + gene protein_coding_gene FALSE TRUE AT4G30996.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24290.1); similar to H0311C03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67554.1); similar to Os04g0501800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053232.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) -0.155377609581929 -1.67293014074573 0.122813355257874 1 0.639967166654345 15.7501779978149 -0.155377609581929 0.0748609365466829
AT3G42660_at 1.93809765910552 2.44428049719371 1.75600582645681 1.93927056110323 2.08648081648874 1.79594287360937 2.35994870506277 2.69882921574289 2.66855829779498 2.59928927443653 2.59037091490049 3.23379614505421 2.45590373516467 2.6187999063036 3.21722967836492 2.48091888491857 2.38706794857398 2.61554907224504 2.5315483578952 0.219334265136117 0.230055675943451 0.233431464162552 0.235516403870798 0.219334265136117 0.228798828039940 0.219335367034037 0.231786903393776 0.236693090285048 0.220868590619312 0.221465898235765 0.22975140863672 0.230232281265221 0.225485735958633 0.226305896046753 0.219334265136117 0.246822490250979 0.228785249860376 0.220128825814305 3 3 + 14765904 14766657 14766328.091 14762266 14766687 + gene protein_coding_gene FALSE TRUE AT3G42660.1 nucleotide binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08390.1); similar to Os09g0241100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062645.1); similar to WD40 repeat-containing protein (ISS) [Ostreococcus tauri] (GB:CAL57825.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.182854053773285 -1.67269530159492 0.122860375983924 1 0.63965646895804 4.77723360887851 -0.182854053773285 0.121021931564007
AT3G63020_at 1.72473949976053 1.22091066752589 1.96268609598269 1.73384574808095 1.38154741241915 1.71663029232833 1.72520885760318 1.51381323433498 1.70376934060259 1.64656699516326 1.82725918366241 1.43060446278175 1.7005099956448 1.63507191505533 2.02518011627731 1.37673598031950 2.07186538204313 2.15678369552468 1.35738578065532 0.175477506816955 0.182001213543582 0.181189930268277 0.177104525262711 0.176988255406658 0.177340754805750 0.175477506816955 0.181627347387786 0.190969623699531 0.188401341637496 0.176548955032775 0.175477506816955 0.180375623594743 0.187867960610745 0.178512410882873 0.177839343191988 0.180885300414448 0.192910987720773 0.191762155571537 3 3 + 23305445 23305883 23305688.091 23305400 23306014 + gene protein_coding_gene FALSE TRUE AT3G63020.1 unknown protein 0.180634979168264 1.67245282662362 0.122908942430584 1 0.639335694264816 3.29604374944813 0.180634979168264 0.117776386972711
AT4G03740_at 0.736486761295487 0.707401245467355 1.17320320477563 0.95808153762554 0.366338786161013 0.610803611577824 0.496030079589617 0.817775311513759 1.14199032040106 1.04062088826339 0.747808855193923 0.403738449210316 0.814927425380252 1.21439341035755 0.518527518550665 0.261572137933247 0.435436796832289 0.878003407728162 1.00364283119610 0.216815100926157 0.217181092344542 0.215096071861095 0.211476242528799 0.212416468285022 0.216928641553623 0.211476242528799 0.211476242528799 0.215059428492651 0.226419254591529 0.223611049669420 0.214866674830739 0.215923248950157 0.219405430092347 0.240994877690496 0.218285193867755 0.225439374995859 0.221724627061445 0.217711986294645 4 4|0 -|/ 1662005 1662861 1662332.556 1661990 1663513 - gene protein_coding_gene FALSE TRUE AT4G03740.1 similar to SLL3 ORF2 protein [Brassica oleracea] (GB:ABD65153.1) -0.157550122118384 -1.67167373282343 0.123065106608743 1 0.6383051910024 1.59395790730169 -0.157550122118384 0.0793802976654808
AT4G36490_at 1.75750410310017 1.16058734762015 1.73545012411901 1.79031756538738 1.35742480608167 1.43435394272146 2.00726821282006 2.10914754225178 2.64852655125362 1.52741993575813 1.92769614830527 1.83443634029997 1.83966056458189 1.79323486629355 1.85611901859488 1.58331601466821 1.72934135680844 1.98669169226246 1.78023000205631 0.228745808811764 0.235730073246729 0.240670480829165 0.229837181031175 0.227816735425547 0.227532780923052 0.234722672174746 0.231699205122487 0.239593408533729 0.232184023584067 0.232012600298812 0.227532780923052 0.248554552650957 0.230148565639284 0.227532780923052 0.227532780923052 0.230504297685518 0.232289198498964 0.233282975607873 4 4|0 +|/ 17223969 17224637 17224348.2 17222001 17225019 + gene protein_coding_gene FALSE TRUE AT4G36490.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT2G18180.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE84078.1); similar to phosphatidylinositol transfer-like protein II [Lotus japonicus] (GB:AAK64378.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85401.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.172910177333256 -1.67148309221127 0.123103346171460 1 0.638053072232885 3.57110878713747 -0.172910177333256 0.106061127440390
AT3G42050_at 10.8257650472463 10.8411476652862 11.0769951874970 11.0275420747228 11.0070058258674 10.8187246889336 11.1474963393289 11.0457374058774 10.7640291189249 10.9447989288958 11.1172026731310 11.0757221568482 11.1251081463196 11.0460687423608 11.1404641489118 11.0020781170349 11.1076551435961 11.2229982727797 10.8128050039295 0.0675795517426024 0.0660792543459845 0.0701564669978251 0.068770743990164 0.0658197483953217 0.0706825846866193 0.0665379264268571 0.0658197483953217 0.081357036275395 0.0672510378424498 0.0681494417194058 0.068874200812406 0.0658197483953217 0.0701509604168411 0.0674369846655751 0.067320001082167 0.0678500476164359 0.0680975491054934 0.0667999288019028 3 3|0 -|/ 14239839 14240573 14240159.889 14239481 14244231 - gene protein_coding_gene FALSE TRUE AT3G42050.1 vacuolar ATP synthase subunit H family protein Identical to Probable vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar proton pump subunit H) [Arabidopsis Thaliana] (GB:Q9LX65); similar to putative vacuolar ATPase subunit H [Mesembryanthemum crystallinum] (GB:CAD27445.1); similar to Probable vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump subunit H) (GB:Q84ZC0); similar to putative vacuolar ATPase subunit H protein [Suaeda maritima subsp. salsa] (GB:AAO65974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain ATPase, V1 complex, subunit H, C-terminal; (InterPro:IPR011987); contains InterPro domain ATPase, V1 complex, subunit H; (InterPro:IPR004908) 0.14082407717993 1.6712868747992 0.123142715411451 1 0.637793594908207 21.9464050421981 0.14082407717993 0.0381061899354111
AT1G74520_at 9.27588458905579 9.48190345933894 9.04816102431614 9.07356800349661 9.8467572892955 9.38177171083921 9.62317227615306 9.67322273657958 9.17811313457365 9.29747708367626 9.72965810704432 9.93750648935657 9.76457906212987 9.68238591215469 9.61166467477619 9.61327009148025 9.29616701847433 9.93232128296967 9.10975643724696 0.0948363052721415 0.0958465955351922 0.102508353678623 0.100434562260460 0.0953647613055857 0.0928718800579298 0.0937328988342626 0.0916218033220153 0.104838054788827 0.0936190532730169 0.0989201265529363 0.093059534387367 0.0949739531582996 0.104869385098486 0.0991072515556693 0.0954611966321949 0.111099107695399 0.0916218033220153 0.0969855656583742 1 1|0 -|/ 28012068 28012791 28012336 28011635 28012961 - gene protein_coding_gene FALSE TRUE AT1G74520.1 ATHVA22A (Arabidopsis thaliana HVA22 homologue A) Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. Identical to HVA22-like protein a (AtHVA22a) (HVA22A) [Arabidopsis Thaliana] (GB:Q9S7V4); similar to ATHVA22C (Arabidopsis thaliana HVA22 homologue C) [Arabidopsis thaliana] (TAIR:AT1G69700.1); similar to HVA22-like protein c , putative [Solanum demissum] (GB:AAU93595.1); similar to Os06g0226600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057204.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) 0.162423634835483 1.67098006670657 0.123204296152997 1 0.63738790667963 18.8710849519496 0.162423634835483 0.0885468354184675
AT1G19110_at 9.6708013237144 9.67465171730498 9.59106818698221 9.5617308732085 9.72202613787955 9.59463595807005 9.83647978717082 9.9516505220396 10.0998233768316 9.81010349039236 10.0505147374691 9.91384755547166 9.83025020325 9.8159381974167 9.76965094585592 9.84620681853265 9.56565726579142 9.72438772789742 9.86848486904006 0.0809715744446213 0.0781055928910028 0.078473757053117 0.080330002637736 0.0786851979367348 0.0840465828665238 0.0778436834814036 0.0788494368933738 0.083689447553034 0.0778410613565154 0.0771616591806991 0.0764260337063266 0.0785522132328302 0.0764284807715478 0.0781851593854279 0.0764807623195869 0.0797642941856081 0.0764260337063266 0.0777572330800151 1 1 + 6604868 6605719 6605470.091 6602117 6605899 + gene protein_coding_gene FALSE TRUE AT1G19110.1 inter-alpha-trypsin inhibitor heavy chain-related similar to inter-alpha-trypsin inhibitor heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G72500.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE78212.1); similar to von Willebrand factor type A domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89244.1); similar to von Willebrand factor type A domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96527.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) -0.138805556241559 -1.67097158484782 0.123205998972231 1 0.637376691818743 19.5707275267372 -0.138805556241559 0.0301572564733734
AT2G35150_at 0.7970412444986 1.00446329975775 0.875955502551134 1.36019253977031 0.612637701259205 1.41661077308280 0.934198922903307 0.900109315087864 0.981264831828705 1.64691019586864 1.79997965521989 1.89580932055477 1.90740648205569 1.88044321182897 1.9446713702466 1.52948308522872 1.86793650027384 2.49367144202083 2.29138978151761 0.199327795183852 0.201690351646890 0.196623153269638 0.212798052405130 0.201315823654545 0.199073297447678 0.198022541147954 0.200057915197645 0.200039437123659 0.196235607417407 0.196631614463585 0.193257614245622 0.201220071862046 0.196553243633935 0.204317609709071 0.197066740709783 0.206384651240168 0.196221625327888 0.197514962727319 2 2 - 14824477 14824870 14824714.909 14824126 14825290 - gene protein_coding_gene FALSE TRUE AT2G35150.1 phosphate-responsive 1 family protein similar to phosphate-responsive 1 family protein [Arabidopsis thaliana] (TAIR:AT2G17230.1); similar to Os07g0496700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059703.1); similar to unknown [Sorghum bicolor] (GB:AAQ06267.1); contains InterPro domain Phosphate-induced protein 1 conserved region; (InterPro:IPR006766) 0.21623306531383 1.67076139614566 0.123248203186976 1 0.637098786762686 2.7650411972807 0.21623306531383 0.166442624281284
AT3G22790_at 1.65747451428383 1.63979909112253 0.792619081135468 0.83440135288552 1.34762777163942 0.952529076072933 1.42656898717287 1.19746566382151 1.19419055188110 1.62789212946399 2.89388934131859 2.96014664025267 2.32173438132297 2.50317548424109 3.49448041525969 2.05586199591182 1.37776727471735 2.36215821753736 2.2262518914249 0.214182481163661 0.20963489289461 0.210661943083179 0.209560184468596 0.210591698085046 0.214930546424548 0.206908960308151 0.209952104632195 0.207462796028164 0.21193387972679 0.211936163277547 0.227441472671578 0.206908960308151 0.212324408281609 0.216287039654645 0.212379766823526 0.211170566788506 0.221147282947468 0.209693516092624 3 3 - 8052461 8053020 8052755.909 8052453 8057895 - gene protein_coding_gene FALSE TRUE AT3G22790.1 kinase interacting family protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03080.1); similar to M protein repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G14760.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82954.1); similar to Prefoldin; tRNA-binding arm; t-snare; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE80288.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain KIP1-like; (InterPro:IPR011684) 0.157420392115007 1.67004561815950 0.123392022337315 1 0.636152552679073 3.32052564713852 0.157420392115007 0.07942615058731
AT3G52920_at 6.76691527169418 7.0868386297877 7.07106934472973 7.07385907220872 7.46951692514026 7.33778960279984 8.16210965415912 8.14377072596579 7.74629253997591 8.18958338384493 8.3946487758235 8.21723981511145 8.18210487535932 8.1373866421413 7.61740814442034 8.34778404440923 8.48620062267634 7.51778189631382 8.38593631671056 0.192904233097264 0.166391968746333 0.184117732724045 0.171090493858038 0.166585430755591 0.179247497500231 0.166434249581766 0.172606572519107 0.195616198850915 0.164568259115178 0.170263254594130 0.16474587427922 0.170931990289627 0.171961102257802 0.172046703612727 0.163639233844156 0.178484605421558 0.172268265816774 0.163639233844156 3 3|0 +|/ 19635604 19636935 19636336.111 19635321 19637236 + gene protein_coding_gene FALSE TRUE AT3G52920.1|AT3G52920.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36410.1); similar to Os04g0408600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052720.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); similar to OSJNBa0042I15.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04893.2); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36410.2); similar to Os04g0408600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052720.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); similar to OSJNBa0042I15.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04893.2); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033) -0.148275614496976 -1.66953027352993 0.123495661564871 1 0.635471424119753 15.4989037027485 -0.148275614496976 0.0599596679932892
ATMG01350_at 1.86806238966997 2.21783371010636 1.59928616076377 1.9579477114119 1.25459802100946 1.74054990160618 1.77845950692452 2.10333866604677 1.87092090092396 1.73037061013100 1.56666813339264 1.64018778962666 1.87571781928975 1.69893063633587 1.77702563317554 1.80186364120426 1.86117688222699 1.79685734493046 1.73955689814475 0.214522917946661 0.216181933579058 0.215544358351384 0.221862296111541 0.215458781874139 0.215528116104616 0.223153238361006 0.221051672121478 0.218842788652261 0.215890853162507 0.216554768604615 0.216283827764504 0.217726039882329 0.214750709396881 0.212520256465304 0.217162874030176 0.214140362023880 0.215712888704302 0.2163300756995 M M + 346796 347112 346973.182 346757 347194 + gene protein_coding_gene FALSE TRUE ATMG01350.1 Identical to Hypothetical mitochondrial protein AtMg01350 (ORF145c) [Arabidopsis Thaliana] (GB:P92564) -0.190903718766440 -1.66851229076803 0.123700612560046 1 0.6341263044993 3.58130265248704 -0.190903718766440 0.133226667967906
AT3G46960_at 6.58259616072005 6.77512701137821 6.51492108974998 6.19607412787574 7.20182262604413 6.984972275769 6.65733329404967 6.69543133622212 6.46650079565239 6.46295094639112 5.84081273134831 6.51716464016175 6.13369469351709 6.42057762653817 5.88292962390676 6.33084554242158 5.79687545241757 5.97662054761034 6.47793877946092 0.207016434639359 0.202210041304256 0.208578769145667 0.206852527346235 0.205002203326612 0.209102680444844 0.203130419969452 0.213205471224247 0.213350568972057 0.204315036810469 0.208685971594278 0.202499824442694 0.205193315090693 0.203034782668714 0.201172046149957 0.202864671960636 0.242563405567043 0.209868287359683 0.201172046149957 3 0|3 /|- 17302004 17302685 17302354.4 17301858 17309052 - gene protein_coding_gene FALSE TRUE AT3G46960.1 ATP-dependent helicase similar to HEN2 (HUA ENHANCER 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT2G06990.1); similar to superkiller viralicidic activity 2-like [Rattus norve (GB:NP_998724.1); similar to putative Helicase SKI2W [Oryza sativa (japonica cultivar-group)] (GB:BAD28046.1); similar to hypothetical protein [Mus musculus] (GB:AAC05282.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.154932243663709 -1.6680531544201 0.123793149811401 1 0.633519770333174 12.9918198807636 -0.154932243663709 0.0748763053066718
AT4G24530_at 5.54650357354941 5.77133724896064 4.6634359613612 5.11070774551743 5.75408168464281 5.54163752043304 5.51806529191129 5.85241513170439 5.5335430625803 5.5661013600353 5.67231641347688 5.836906791522 5.25577032971217 5.78824553223957 5.51757995161638 5.42074802923690 5.58878147627401 5.73125451201494 5.54271404329404 0.260536376099220 0.263080462667732 0.284019434096961 0.264512550258090 0.259388713821062 0.275075936784621 0.267962755202166 0.261182445967086 0.279452736778164 0.262221186690188 0.257208457677862 0.257208457677862 0.258634185548805 0.259351208000734 0.263193729386007 0.257208457677862 0.264603889965466 0.275928913665552 0.264630693596131 4 4 - 12667451 12667909 12667717.182 12667368 12670023 - gene protein_coding_gene FALSE TRUE AT4G24530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65470.1); similar to putative auxin growth promotor protein [Lycopersicon esculentum] (GB:AAK84479.1); similar to Os09g0412200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063155.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.175308513000545 -1.66752022788585 0.123900636510742 1 0.632815873381334 11.0442246205008 -0.175308513000545 0.110474032357715
AT1G31770_at 2.07919548878021 3.20158566459363 2.62282065564693 3.07248654735619 2.52313337080125 2.43428963753937 3.42194208920277 4.02625974777887 2.47625842240382 2.45773334838895 2.19481573902968 2.72095293118111 2.82878553993374 2.30608289720025 2.67957518665377 3.02963328023446 2.39084093466954 2.4459784848607 2.86838716350906 0.285056075529386 0.276256242685077 0.279285719496583 0.277974284495101 0.279376853633120 0.273725830133657 0.280025125008559 0.290682141377846 0.27747427015343 0.282602112510164 0.279829911124438 0.274789396242632 0.272794831332756 0.272794831332756 0.272794831332756 0.273196106328807 0.277886310592773 0.273704711363479 0.278865767847559 1 1 - 11375261 11375805 11375591 11374874 11377775 - gene protein_coding_gene FALSE TRUE AT1G31770.1 ABC transporter family protein Identical to White-brown complex homolog protein 14 (WBC14) [Arabidopsis Thaliana] (GB:Q9C6W5;GB:Q9C6R7); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT4G27420.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97034.1); similar to Os08g0167000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061077.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.272636524316568 -1.66637502934246 0.124131894431706 1 0.631303702519381 5.51040220137291 -0.272636524316568 0.234426937950023
AT1G75920_at 2.15110486995469 2.13521043539918 2.24042171562177 2.52835662878476 1.96176178960667 2.27414870635337 2.41818270361851 2.47502799504978 2.47176079719856 2.66667270554132 2.39300581912986 2.19955694197136 2.70311200234491 2.19817611026945 2.34982257455003 2.17292708048587 1.98965220673073 2.21386868723438 2.48945724686166 0.185470411119147 0.181728544715941 0.18207954996211 0.186907702823085 0.18580248944522 0.192827284401512 0.186849425401243 0.189379303062999 0.187483179392274 0.184664157343976 0.196682977260091 0.186495100874997 0.186224811690062 0.185030267671003 0.188260860751226 0.185053241185612 0.1989136953444 0.184445825244945 0.187531733932359 1 1|0 +|/ 28509936 28510612 28510247.7 28509205 28510829 + gene protein_coding_gene FALSE TRUE AT1G75920.1|AT1G75920.2|AT1G75920.3 family II extracellular lipase 5 (EXL5) similar to EXL4 (extracellular lipase 4), acyltransferase/ carboxylic ester hydrolase/ lipase [Arabidopsis thaliana] (TAIR:AT1G75910.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.154412181470752 -1.66589179429542 0.12422959269489 1 0.630665791179972 4.68309956940197 -0.154412181470752 0.0742273636593703
AT4G30480_at 7.47962349534525 7.7783046719972 7.88701746615339 7.73634688726547 7.8305209786964 7.73587876038939 7.50275122485313 7.2094815634899 6.92554064285742 6.96394270644043 7.00645129332286 7.10859837760113 6.55262732688995 6.81382273744717 7.18828311255536 7.17633099620073 7.16334533983425 6.49364339226925 6.89892806417473 0.204992139270618 0.202456815655561 0.208185997112953 0.204116521009112 0.198871305742848 0.218795950381864 0.198383251903222 0.206226931951005 0.209367771861527 0.201786686538317 0.201102951546961 0.200093728035884 0.198298232811688 0.208864041855622 0.200681337259339 0.209019273501283 0.209516824500163 0.203529097307843 0.205021550930378 4 4|0 +|/ 14897764 14898919 14898368.3 14897352 14899127 + gene protein_coding_gene FALSE TRUE AT4G30480.1|AT4G30480.2|AT4G30480.3 tetratricopeptide repeat (TPR)-containing protein similar to TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4), binding [Arabidopsis thaliana] (TAIR:AT3G58620.1); similar to putative tetratricopeptide repeat protein [Oryza sativa] (GB:AAL59042.1); similar to Os10g0486900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064904.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to putative tetratricopeptide repeat protein [Oryza sativa] (GB:AAL59042.1); similar to Os10g0486900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064904.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to putative tetratricopeptide repeat protein [Oryza sativa] (GB:AAL59042.1); similar to Os10g0486900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064904.1); contains domain no description (G3D.1.10.150.160); contains domain HEAT SHOCK PROTEIN 70 (HSP70)-INTERACTING PROTEIN (PTHR22904:SF9); contains domain TPR-like (SSF48452); contains domain CHAPERONE BINDING PROTEIN (PTHR22904) 0.156659067531178 1.66586750290949 0.124234505623366 1 0.630633727207189 14.5786697776101 0.156659067531178 0.0787115910383397
AT1G14070_at 1.05598218763516 0.748941338614131 1.10133008991013 0.858560158341469 0.887354460860031 0.982669501682394 0.669168021591348 0.837406156395385 1.57093438756582 0.790076752087804 0.369080475627927 0.473538862547563 0.832713045846707 0.804769587071324 0.591070969681185 0.475849496760619 0.883584207358124 0.91324400151369 0.961989693772257 0.209182138654562 0.222889794221308 0.209224340899885 0.211129138600196 0.221853808591211 0.212138237770690 0.211515717088113 0.211415272934671 0.231841088206093 0.209182138654562 0.21332379632221 0.212945407169811 0.211545880279289 0.212215150537924 0.209182138654562 0.209182138654562 0.211015054726692 0.215512533149267 0.209182138654562 1 1 + 4819559 4820066 4819836.818 4818545 4820147 + gene protein_coding_gene FALSE TRUE AT1G14070.1 FUT7 (Fucosyltransferase 7); fucosyltransferase/ transferase, transferring glycosyl groups member of Xyloglucan fucosyltransferase family Identical to Probable fucosyltransferase 7 (EC 2.4.1.-) (AtFUT7) (FUT7) [Arabidopsis Thaliana] (GB:Q9XI81;GB:Q9LMF2); similar to FUT6 (fucosyltransferase 6), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14080.1); similar to FUT8 (FUCOSYLTRANSFERASE 8), galactoside 2-alpha-L-fucosyltransferase [Arabidopsis thaliana] (TAIR:AT1G14100.1); similar to FUT4 (fucosyltransferase 4), fucosyltransferase [Arabidopsis thaliana] (TAIR:AT2G15390.2); similar to Putative fucosyltransferase 10 (AtFUT10) (GB:Q9SJP6); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) -0.15504074351745 -1.66561893739832 0.124284787895028 1 0.630305642427468 1.78050062701685 -0.15504074351745 0.0755518589313143
AT4G04890_at 6.56837579998037 7.22292550778922 6.29179822352891 5.99530269304493 6.47793270141545 6.59763237391384 7.47065155311934 7.82508693895938 8.32831558860502 7.73597635916178 9.06800658366028 9.20663625493214 8.43599402118751 8.75707579247283 8.69423822530218 8.26850027155727 7.98828815791069 8.48495076471322 8.15461459694431 0.201578927637678 0.19476202131436 0.206737165523193 0.202993681246930 0.193786306884389 0.207882495441507 0.196710559680392 0.196643294278300 0.206065942474476 0.203958138587726 0.192645520229259 0.195725143131952 0.192645520229259 0.203199606541352 0.192756615236876 0.192645520229259 0.206689240205319 0.197836799329273 0.194805260707483 4 4 - 2477037 2477730 2477278.364 2476487 2482307 - gene protein_coding_gene FALSE TRUE AT4G04890.1 PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. similar to ANL2 (ANTHOCYANINLESS 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00730.1); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05230.2); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeobox protein (GB:AAB37230.1); similar to A20 (GB:AAB49378.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.195550520628160 -1.66515831616495 0.124378014774682 1 0.629697734751923 15.1491782775710 -0.195550520628160 0.140195360346736
AT4G25600_at 4.13709506812907 4.16755870994914 4.06289761206315 3.96413448356554 4.02386831922615 4.26326289584063 4.27750772198875 3.98264663305932 4.20372850756296 4.14253922282158 4.70628513285289 4.82473736159788 4.46628745144725 4.92143258652562 4.72513824612626 4.60871320002008 4.59818706650599 4.85569156604721 4.69703330654578 0.261181927723553 0.258144015336284 0.258829200261545 0.258144015336284 0.258144015336284 0.263490857228021 0.268324270686686 0.269299928429225 0.269881495964674 0.258654798191720 0.258144015336284 0.262060617346405 0.259062098810274 0.258638962293887 0.258144015336284 0.258144015336284 0.266355345862140 0.258144015336284 0.259555725701994 4 4 + 13061776 13062316 13062108.714 13060668 13062604 + gene protein_coding_gene FALSE TRUE AT4G25600.1 ShTK domain-containing protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G28480.1); similar to prolyl 4-hydroxylase [Dianthus caryophyllus] (GB:AAT84604.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain Metridin-like ShK toxin; (InterPro:IPR003582) 0.151440429236296 1.66510638253812 0.12438852972238 1 0.629629200912602 8.64040947482797 0.151440429236296 0.068117405198929
AT1G22490_at 3.05060592867612 2.88573275504579 2.85544008630833 3.15402820425545 2.79153285265292 3.09350040656455 2.91611153900064 3.00607920229812 2.43105877118086 3.04045847656494 2.61630903905756 3.02251697654500 3.22448369321154 3.19006073254845 3.12088002639697 3.21070558778554 3.36876948853774 3.11226510702673 2.93561598306711 0.197863071258262 0.204318216996177 0.194232500515649 0.206108051044468 0.197070550108438 0.208389805180607 0.193257009505374 0.196195694201936 0.200216311527319 0.194499230793513 0.196586101780966 0.192159829127363 0.196664942937776 0.198967614940083 0.199452244721956 0.195614354110297 0.204257647651226 0.199048923462274 0.202052063316213 1 1 - 7938475 7940110 7939411.273 7938240 7940581 - gene protein_coding_gene FALSE TRUE AT1G22490.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein (bHLH096) [Arabidopsis thaliana] (TAIR:AT1G72210.1); similar to Helix-loop-helix DNA-binding domain, putative [Medicago truncatula] (GB:ABE77974.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.157432059487266 1.66505347645575 0.124399242375770 1 0.62955938500492 5.92444215934674 0.157432059487266 0.0803571298432603
AT3G28780_at 2.22855055128131 1.87436496835791 1.8458532055032 1.63417762155327 1.43529459386051 1.81119467230164 1.54581139888970 1.85423834904069 2.48970795524231 1.77544546239153 2.23234487576880 1.49860486860087 2.07187010712326 2.02697418713825 1.98985042631800 1.62067182130692 1.23824839622373 1.90727895351664 1.67169374793032 0.223381291475573 0.222555761280985 0.219505140723359 0.232858927355162 0.221174103948702 0.227633845304523 0.220439092955326 0.220672226992119 0.226862010570646 0.226617846170767 0.219733065386868 0.225526126872324 0.220513041310793 0.222396327989789 0.220517939329579 0.231364018606866 0.233909985810372 0.224205699775882 0.22387784527007 3 3 - 10807368 10807803 10807581.636 10807155 10809695 - gene protein_coding_gene FALSE TRUE AT3G28780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28840.1); similar to putative lipoprotein [Burkholderia pseudomallei 1710b] (GB:YP_332515.1); contains InterPro domain Protein of unknown function DUF1216; (InterPro:IPR009605) -0.174914947138123 -1.66447524139178 0.124516379470199 1 0.62879641529285 3.67977542494234 -0.174914947138123 0.110359773560946
AT2G37520_at 5.7860671729164 5.72937962308429 4.87491623994671 5.41049307380577 6.31800128312803 5.03982052655572 4.85823727036718 4.94929104992579 4.14094640513652 4.09439192500222 4.20532623658664 4.91994690565463 4.95477269491053 4.87932649553495 4.24622086015362 4.63272741649853 4.84851095605414 4.68485826107627 4.35462949525378 0.253611701366265 0.248671597620500 0.251697262975327 0.250555191597002 0.246431571749767 0.274557568715130 0.253182571732532 0.246547980191299 0.260004720395248 0.24854597071451 0.246005250469629 0.246662969311201 0.258990908671439 0.257023885233715 0.254098158652245 0.247046623485849 0.248086201550074 0.244932594243743 0.243778273133947 2 2|0 -|/ 15752446 15753173 15752771.8 15751847 15756866 - gene protein_coding_gene FALSE TRUE AT2G37520.1 PHD finger family protein similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G53680.1); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14274.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.277434644148401 1.66284390295759 0.124847380343655 1 0.626644693844805 9.80483436501932 0.277434644148401 0.240545538264585
AT1G14690_at 8.98561583862239 9.05773127986849 9.79916987195833 9.5889142569070 9.98675285259422 9.89787833081274 9.16549406701068 9.16701264942076 9.6599606485219 9.5182558279835 9.31162873285652 8.8312599866126 9.26510618562086 9.213419463666 8.61411769992295 9.48881352986384 9.1284978826102 9.21518701867643 9.548763694236 0.186048014013073 0.152072519366975 0.185954787481451 0.152072519366975 0.152072519366975 0.152072519366975 0.181432325145881 0.152319724397764 0.190249713655345 0.163143202098218 0.177101685714295 0.181340889675204 0.152072519366975 0.173370940584233 0.183696721530033 0.152072519366975 0.174280499362637 0.174509241008755 0.152072519366975 1 1 - 5052100 5052127 5052114 5051755 5055247 - gene protein_coding_gene FALSE TRUE AT1G14690.1|AT1G14690.2 similar to ATMAP65-6, microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01910.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936) 0.141029562451189 1.66239369243563 0.124938866441656 1 0.626051077492668 18.8106530780956 0.141029562451189 0.0414280891548711
AT1G76360_at 8.83225677392325 8.82787015035478 9.16681729855556 9.13094334540599 9.41573157396251 9.1958881373146 8.98292324122934 9.03423038895098 8.63738501423002 8.97136251093854 8.89734931744287 8.72885020660597 8.97192165950634 9.0428861686789 8.46038673489188 8.59636829201106 8.63803078929893 8.81966243536357 8.78074328358268 0.117768690019974 0.119715877672823 0.111759095147889 0.114914651497555 0.117879676545166 0.115682541722973 0.114409337035482 0.114088606111967 0.121430086291356 0.118195083515852 0.114369763489844 0.114716914641198 0.117033005636997 0.119368299161300 0.117723082051492 0.111759095147889 0.12701244558721 0.126458268363164 0.114732535356827 1 1 - 28648229 28648733 28648457.455 28647932 28651489 - gene protein_coding_gene FALSE TRUE AT1G76360.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G17220.2); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.140479982209802 1.66233494761979 0.124950808219545 1 0.625973627279359 17.8562970570748 0.140479982209802 0.0395647558859246
AT2G16280_at 9.32231801710374 9.57691254015693 8.98048344751534 9.088786544622 9.61295992696485 9.45300817071155 10.0112050505814 10.1363531530337 10.2588150044575 10.0122483168749 10.9893821562120 10.4005847882828 10.6911714165969 10.6888516396309 10.2407914273018 10.2415531563924 9.69521651663899 9.97685311217313 10.2763509821956 0.124620032105319 0.117547424085108 0.12055155735672 0.124096374900250 0.117979571944792 0.118086927750438 0.115044322257736 0.119615892233879 0.121207329857574 0.117051968259727 0.115380778160716 0.112392369073523 0.113898932067582 0.118847482324440 0.120064698841977 0.114411531055886 0.117421178749180 0.117448986067563 0.116737688185964 2 2 + 7059210 7059781 7059536.364 7058026 7059979 + gene protein_coding_gene FALSE TRUE AT2G16280.1 very-long-chain fatty acid condensing enzyme, putative Identical to Probable 3-ketoacyl-CoA synthase 9 (EC 2.3.1.-) (KCS-9) (Very-long- chain fatty acid condensing enzyme 9) (VLCFA condensing enzyme 9) (KCS9) [Arabidopsis Thaliana] (GB:Q9SIX1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to KCS2 (3-ketoacyl-CoA synthase 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G34510.1); similar to beta-ketoacyl-CoA-synthase [Marchantia polymorpha] (GB:AAO48425.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.147404287810626 -1.66233471226761 0.124950856064505 1 0.625973316989928 19.7967643369177 -0.147404287810626 0.0593944541529841
AT4G11110_at 5.39285287736523 5.40565512939648 5.42837273658561 5.06858047367971 6.22141243395121 5.73680261653069 5.83128953140847 5.91103653338131 5.24179227273331 5.26587029462242 5.73833321073275 5.75403274216978 6.12844991805529 5.86500515781806 4.96997777541295 5.99288460030515 5.50452270009125 5.28617685245577 5.36405491505598 0.194842785734746 0.19176900941927 0.195569375461985 0.193329835362004 0.189514863302325 0.195757715183022 0.193169846744500 0.205780210215095 0.217397898597278 0.196971488173968 0.189514863302325 0.191116968229699 0.196146087252371 0.199080179450100 0.200324306518281 0.194129321698700 0.208558422293875 0.199281429792838 0.193891965525664 4 4|0 +|/ 6775723 6776614 6776074.3 6771601 6777221 + gene protein_coding_gene FALSE TRUE AT4G11110.1 SPA2 (SPA1-RELATED 2); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. similar to SPA1 (SUPPRESSOR OF PHYA-105 1), signal transducer [Arabidopsis thaliana] (TAIR:AT2G46340.1); similar to Os05g0571000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056370.1); similar to Os01g0725800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044115.1); similar to hypothetical protein DDBDRAFT_0219336 [Dictyostelium discoideum AX4] (GB:XP_636746.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.171466961395908 1.66163691910214 0.125092782762227 1 0.625053451115067 11.0972479734210 0.171466961395908 0.105381712420060
AT1G04150_at 1.1203734131377 1.15707203283889 1.48943509869956 1.14551372937203 1.28855953775208 1.24385123698921 1.43573177547255 1.5832568758535 1.73471493955948 1.46170890465856 1.32071238000978 1.35565190945579 1.81704392430264 1.37131686743746 1.46092238371181 1.35686506076884 0.604351950591375 1.21871784180992 1.54575290850443 0.238353641242457 0.234916951856045 0.244619096842088 0.236250964694519 0.237711240293471 0.239699706834915 0.240483799665321 0.234916951856045 0.248081132671873 0.248691538088751 0.238132190938171 0.234916951856045 0.241455020957645 0.239271640782751 0.235743989594582 0.238781651648947 0.24974192244025 0.241113474079418 0.249273418296180 1 1 - 1081211 1081775 1081480.364 1081207 1084245 - gene protein_coding_gene FALSE TRUE AT1G04150.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G22610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48060.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.149898209051157 -1.66095831041368 0.125230944989609 1 0.624159082311981 2.75493589951533 -0.149898209051157 0.0655306587802675
AT4G39150_at 9.0574896648664 8.8448706891686 9.08821128645246 9.06974032820277 9.55008886705355 8.70346806989706 10.0143700676069 9.73048916452998 9.21774359389223 9.4131893889808 9.4796129081404 9.31339854041862 9.2584540395335 9.32994936344892 9.17242312891496 9.2201544145677 8.53203543863868 9.15789145973744 9.24572985803115 0.123876218485787 0.127452206999346 0.122853080768991 0.128237128099742 0.123453646092987 0.145553411319316 0.124128960895942 0.126622076225049 0.137129037451597 0.119702482666461 0.121931405886463 0.121636813596032 0.121898387589815 0.130101785952817 0.124056532239034 0.123676796710075 0.137830293348195 0.131631509204452 0.127093257961662 4 4|0 -|/ 18233649 18234604 18234168 18233479 18236058 - gene protein_coding_gene FALSE TRUE AT4G39150.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G21510.1); similar to Os08g0522600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062282.1); similar to Os05g0543700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056206.1); similar to putative dnaJ-like protein [Oryza sativa subsp. indica] (GB:AAD27555.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.209079396967269 -1.66094502359742 0.125233651490719 1 0.624141573061022 18.4949464465438 -0.209079396967269 0.158881066170609
AT1G17040_at 4.12089706824585 4.4540899993423 4.60504213556288 4.42112922544306 4.71675042585088 4.49272861630647 4.70022490999736 4.68111851238993 4.23649000372189 4.25278373674436 3.74803711249933 3.73515159722723 3.95702175579311 3.63027842286999 3.58521443376498 4.18967687267935 3.82695236244922 4.16176270694589 4.21338043302742 0.221904924868534 0.209569304955402 0.222980959783571 0.228271235534623 0.212739345886349 0.216174923358658 0.213367624500422 0.223039510668386 0.226467153725605 0.233898888596024 0.210109011232317 0.211192215241921 0.217697391274524 0.222137146468420 0.213590964435046 0.212016453661838 0.231700562319765 0.219646011388876 0.214396944114418 1 1|0 +|/ 5827218 5827889 5827619.6 5824841 5828226 + gene protein_coding_gene FALSE TRUE AT1G17040.1 transcription factor-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78540.1); similar to hypothetical protein [Oryza sativa] (GB:AAL79683.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain SH2 motif; (InterPro:IPR000980); contains InterPro domain STAT protein; (InterPro:IPR001217) -0.155063085752812 -1.66081053179261 0.125261050163689 1 0.62396434534075 8.56823759457227 -0.155063085752812 0.0764957039295878
AT4G15310_at 1.67503738598954 1.69361313265666 1.57923810441600 2.05757851370331 1.56414816852095 2.07999221558660 1.53773027831413 1.38380256152582 1.66736066344354 1.74199389179276 1.71906317595893 1.89472337134820 1.79281757263749 1.32516844010245 1.91544109610639 1.45563689596886 1.94016546549404 1.87759825625740 1.45038008869898 0.218461894764198 0.218357695540617 0.244551955896489 0.229737883709335 0.218301070986558 0.221266625757477 0.218301070986558 0.223815725709461 0.218301070986558 0.233009183515576 0.222204427400046 0.218301070986558 0.222978921221715 0.221960693594458 0.224325651399778 0.218301070986558 0.224361127670171 0.226674413161203 0.221182359997685 4 0|4 /|+ 8738718 8739141 8738884.25 8736721 8740047 + gene protein_coding_gene FALSE TRUE AT4G15310.1 CYP702A3 (cytochrome P450, family 702, subfamily A, polypeptide 3); heme binding / iron ion binding / monooxygenase a member of the cytochrome P450 gene family. molecular function unknown. similar to CYP702A2 (cytochrome P450, family 702, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15300.1); similar to CYP702A1 (CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G65670.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE90564.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) 0.183929323595486 1.65983841753466 0.125459247886266 1 0.622683572339727 3.37638671119545 0.183929323595486 0.124664648352051
AT2G03890_at 6.669518543464 6.61257749759003 6.24853750437662 6.3485776908228 6.9378245516219 6.85940486802965 6.14194946101757 6.12017046595768 5.83420792362437 5.93729992601199 6.34876252721975 5.99701109538626 5.91890175237463 5.85846494968613 5.63193972371246 6.51510800591251 6.37106845456671 5.71187635472457 6.17858206819334 0.197694978064644 0.206653835265950 0.199016985958980 0.196280204000299 0.198904893750591 0.211632601023032 0.191892285451903 0.191493416169153 0.205056046305898 0.213843224693568 0.19841597206803 0.196633552909146 0.195858748903219 0.201500671084056 0.201464371909975 0.198371084476782 0.199473817040558 0.204095480652269 0.208180153277282 2 2 + 1187636 1188115 1187855.909 1185522 1188542 + gene protein_coding_gene FALSE TRUE AT2G03890.1|AT2G03890.2 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26270.1); similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13640.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); similar to Os06g0283400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057397.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96840.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403)|similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13640.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) 0.136655231855035 1.65903192479814 0.125623889782955 1 0.62162132649676 12.5060725298056 0.136655231855035 0.0243965913781103
AT1G48430_at 7.20721151675353 6.94769112568608 7.14816318806657 7.15016802785687 8.085388200677 6.87648194015891 5.19353229533294 5.25951017860554 6.18346441631261 5.80275026215481 4.99965215020888 5.27463100103789 5.69538884849495 5.95361764800679 4.34953578112889 6.29142764426191 4.90733390083168 5.76769956923364 6.19373347737014 0.285129256160412 0.279660265661634 0.28604668311771 0.276883366507865 0.291947060694181 0.281254860186212 0.294276580170884 0.283328147520030 0.281450967617185 0.27572306277806 0.276235159469437 0.27572306277806 0.281483952699426 0.276092452930073 0.278069108030451 0.2801719938011 0.306193624262801 0.279601986639336 0.284836912451281 1 0|1 /|- 17906580 17907030 17906827.875 17906304 17910474 - gene protein_coding_gene FALSE TRUE AT1G48430.1 dihydroxyacetone kinase family protein similar to dihydroxyacetone kinase family protein [Arabidopsis thaliana] (TAIR:AT3G17770.1); similar to 3,4-dihydroxy-2-butanone kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM47307.1); similar to 3,4-dihydroxy-2-butanone kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98577.1); similar to Putative 3,4-dihydroxy-2-butanone kinase (GB:O04059); contains InterPro domain Dihydroxyacetone kinase; (InterPro:IPR012734); contains InterPro domain Dak phosphatase; (InterPro:IPR004007); contains InterPro domain Dak kinase; (InterPro:IPR004006) 0.253996079691688 1.65883475411354 0.125664170513957 1 0.621361673496564 12.4659650773987 0.253996079691688 0.214277894834694
AT1G66310_at 0.721124072474648 0.68450517948723 0.490248558352163 1.10231430072925 0.688641003179666 0.546738727210661 0.536279351169949 0.607281273242202 1.10726802351535 0.98005805525987 0.0377844266575122 0.587361077131703 0.0848842959384443 0.453259225426717 0.724367983112325 0.594094279177111 0.785818621450428 0.423972629460184 0.549051435137089 0.200667244295229 0.199565021104523 0.208777034570484 0.200455739742539 0.197786477940945 0.198798814290503 0.206510451829017 0.201611707131258 0.204392865458552 0.209030610183127 0.206296661797863 0.2018552766311 0.208322985555133 0.199182675874294 0.197786477940945 0.205516753051488 0.202997573329719 0.210807496091726 0.203533184036316 1 1|0 -|/ 24726653 24727380 24727063.6 24726634 24728138 - gene protein_coding_gene FALSE TRUE AT1G66310.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G66300.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.173830754534352 -1.65874424380277 0.125682665046797 1 0.621242486752351 1.34225921919659 -0.173830754534352 0.109605636231096
AT1G30630_at 9.44189767468418 9.36596109268304 9.47176190939114 9.44764193125371 9.48324486626112 9.01185773389377 9.38866600058581 9.08611010657011 8.38535223576383 9.00125452584168 9.31905588037272 9.4481550243854 8.88163583622449 8.75245532448495 9.43325346115414 8.78317810991057 8.69698139321669 9.10070317498165 8.86846803054698 0.128807403227937 0.126178538478677 0.131010825561877 0.126178538478677 0.127232015777079 0.126927774598203 0.126178538478677 0.128700876947748 0.135112878163419 0.132627385367876 0.133038502738161 0.126178538478677 0.133926285429580 0.138461321970299 0.130190607728439 0.127296932625318 0.135854812079953 0.135144359581936 0.129165407071499 1 1|0 -|/ 10858531 10859474 10858845.556 10858280 10860243 - gene protein_coding_gene FALSE TRUE AT1G30630.1 coatomer protein epsilon subunit family protein / COPE family protein similar to coatomer protein epsilon subunit family protein / COPE family protein [Arabidopsis thaliana] (TAIR:AT2G34840.1); similar to epsilon1-COP [Glycine max] (GB:BAA94964.1); contains InterPro domain Coatomer epsilon subunit; (InterPro:IPR006822); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.166601784888160 1.65856691720947 0.125718906304332 1 0.621008988237712 18.2389521009031 0.166601784888160 0.0979088836498096
AT4G26240_at 6.9355251027399 7.05891019744537 7.32040504463394 7.28999127838636 7.03120411044582 6.48636985410928 6.50351433161432 6.39182004728719 5.56462045480291 5.3359969564079 5.34290435193816 5.39543280543438 5.65703897804025 5.4835735650203 5.42202856072535 5.11649199896997 5.61876457864415 5.38653716659539 5.30934013925391 0.26121515064211 0.254152336746442 0.256623074819587 0.250583618137965 0.251077440821536 0.264834564550428 0.253661515619927 0.255789017279388 0.259003355122216 0.250521654970733 0.249133747464516 0.249133747464516 0.256075229386193 0.249133747464516 0.249133747464516 0.250655878086738 0.257142401648652 0.260925929822163 0.253551879283950 4 4|0 -|/ 13287492 13288823 13288272.833 13286785 13288980 - gene protein_coding_gene FALSE TRUE AT4G26240.1 similar to Os01g0559300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043342.1) 0.167038734652455 1.65806220976792 0.125822107132945 1 0.620344480706613 12.2928003379124 0.167038734652455 0.0987274747018125
AT4G29010_at 10.2855406688705 10.2104240171448 10.5127699503491 10.5387148937471 10.7259553968614 10.2979816600232 10.3689801152029 10.1943092437932 9.88098201772479 10.2124192256582 10.0945733168668 9.83149787493624 10.2469198362951 10.0858301565457 10.0464018286690 10.0914410503564 9.8628645778081 10.1571114241854 9.88213582073529 0.087869217447495 0.088473585293624 0.0916029660253918 0.09062668821467 0.0902060674402795 0.0902562796995406 0.0887566570428415 0.088588895746017 0.0941693393756024 0.0874971202581141 0.0919788820354797 0.0889487572921834 0.0881809958755381 0.0895021768079727 0.0869468096183339 0.087008463636336 0.0955656885672442 0.0960403486786661 0.0901564377105266 4 0|4 /|- 14297722 14298547 14298150 14297050 14302141 - gene protein_coding_gene FALSE TRUE AT4G29010.1 AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities similar to MFP2 (MULTIFUNCTIONAL PROTEIN), enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT3G06860.1); similar to IQ calmodulin-binding re (GB:ABE82774.1); similar to peroxisomal multifunctional protein [Oryza sativa] (GB:AAL35606.1); similar to multifunctional protein [Oryza sativa] (GB:AAQ13901.1); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, C-terminal; (InterPro:IPR006108); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; (InterPro:IPR006176); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase; (InterPro:IPR006180); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) 0.157138142080415 1.65749051084311 0.125939097113913 1 0.619591907877205 20.4137973413726 0.157138142080415 0.081167449542681
AT4G14240_at 6.06581272433165 6.38050717687043 6.77633615393562 6.71875530421879 6.81044266842918 6.5262842762829 7.74348996276601 7.89345801630386 6.9999408219165 7.13631515829467 7.18699185281501 7.04996605945124 6.69652690509662 7.07065990078628 6.8027670816449 7.17860677629701 7.17956595999328 6.82582116626335 6.85618211105143 0.198609117939049 0.188350735089146 0.185740884565846 0.185875232778900 0.180707813719419 0.19951956855443 0.187302878551838 0.196483021098495 0.194065255611013 0.185549177269810 0.188851334572282 0.186556608475010 0.186511059660539 0.185410249845404 0.191845933076507 0.180707813719419 0.189651115250140 0.185195219072753 0.184386267893322 4 4 - 8204718 8205396 8205129.2 8204342 8207403 - gene protein_coding_gene FALSE TRUE AT4G14240.1|AT4G14240.2 similar to CBS domain-containing protein-related [Arabidopsis thaliana] (TAIR:AT4G14230.1); similar to Os05g0395300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055462.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07635.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.155739260156053 -1.65741968398436 0.125953597544011 1 0.619498682975476 13.8625570736661 -0.155739260156053 0.0784654657757507
AT1G20640_at 7.7552936489365 7.84101674073926 6.57985454736083 7.31032423562977 8.15485490219096 7.92124949562706 7.6022194290775 7.50466834158304 7.31450770174168 7.43829082198624 7.10887987372608 7.38132853668209 7.46196005854497 7.15222983530345 7.3043140692828 7.32524578848408 7.47173539612278 6.74128247344832 7.56830519914436 0.191450635065698 0.183275462826843 0.193497612614825 0.199725137020875 0.185420226664917 0.192167743967169 0.183998381752749 0.189911964694107 0.203188912179129 0.185666409416095 0.184265124843706 0.188163604711869 0.191118026402623 0.185438873019211 0.185745724049777 0.189223505032933 0.193737709515827 0.192813485580913 0.1967264958657 1 1 + 7157440 7157930 7157662.091 7154400 7158208 + gene protein_coding_gene FALSE TRUE AT1G20640.1|AT1G20640.2 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76350.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.190612324278348 -1.65738205796477 0.125961301347735 1 0.619449159141356 14.9255551234298 -0.190612324278348 0.134607399014272
AT3G04460_at 4.52123495366821 4.8870539347249 4.96835207179604 4.95730813296235 5.52016995594417 4.93526697308229 4.65093971197392 4.56780521509114 3.82602132390686 3.91843715133736 3.38599851361763 3.39731943335861 3.73722092296342 4.12750438083198 3.92961126997461 3.96363434219345 3.85940215204104 3.45293898795786 3.68220579203504 0.242714827186900 0.237336566692928 0.242516536243413 0.237497939896365 0.242328714038916 0.248996729600157 0.244552214842011 0.246050812624000 0.243127366931076 0.250838643817915 0.241668597329024 0.239765115838002 0.237336566692928 0.244997775387494 0.239525159262619 0.238370222848081 0.275785781973211 0.239712407978807 0.237336566692928 3 3 + 1187504 1189046 1188493.636 1186490 1189484 + gene protein_coding_gene FALSE TRUE AT3G04460.1 APM4/ATPEX12/PEX12 (PEROXIN-12) RING finger protein involved in peroxisome biogenesis. similar to Zinc finger, RING-type; Pex2 / Pex12, N-terminal [Medicago truncatula] (GB:ABE81549.1); similar to Os10g0467200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064809.1); contains InterPro domain Pex2 / Pex12, N-terminal; (InterPro:IPR006845) 0.180665745427955 1.65733375203627 0.125971192441722 1 0.619385579203123 8.64631228838558 0.180665745427955 0.120265936912986
AT4G11770_at 1.90646729222323 2.15659018235457 2.10836602600177 2.31855142083693 1.63166972461292 1.93141363749134 1.98300706080769 1.89384528895006 1.77207587959552 1.31095408760850 1.60117222929763 1.91509711220935 1.78988582353076 1.64270025186512 1.67898535012705 1.53354952100188 1.94601815043571 2.28541896119077 1.41826620046830 0.193378998573603 0.194668186001950 0.202049161573666 0.203259019896698 0.200988593402089 0.194801528995529 0.195316785488588 0.195834434624858 0.206988288102251 0.193244661412108 0.195114780160012 0.197864132796806 0.195281198410507 0.193271687852577 0.194678957141807 0.195438855673883 0.202291106865593 0.195904986207613 0.210337496924280 4 4 - 7082297 7082833 7082592.818 7082273 7083463 - gene protein_coding_gene FALSE TRUE AT4G11770.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G11750.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.155597057609182 1.65699029031567 0.126041539372742 1 0.618933547172388 3.64100656958384 0.155597057609182 0.0782650302597433
AT4G25510_at 0.869314930780849 0.978492413715064 0.8549211189401 0.959258835642003 0.819023854504814 0.982344662935522 0.617092174245438 1.12609045707413 1.70992814979099 1.30356269801559 1.20160372390399 0.982591378267519 1.21523071453232 1.15141860259167 1.03598174757513 0.849478555109532 1.23004495189737 1.03141240726661 1.25872815839138 0.179161620690482 0.176637363603617 0.174274678454661 0.172378372320794 0.182412590333583 0.171485932990581 0.177101616937402 0.171485932990581 0.178184957345952 0.172776908461612 0.175677992389898 0.180025732434507 0.176216974731811 0.182926556193646 0.174710735167045 0.171485932990581 0.17759822659714 0.179860468901587 0.184651342345372 4 4|0 -|/ 13027465 13027948 13027804.3 13027453 13028046 - gene protein_coding_gene FALSE TRUE AT4G25510.1 unknown protein -0.165356558935615 -1.65662827554613 0.126115724086359 1 0.618457154272741 2.15646393708424 -0.165356558935615 0.0961285588498854
AT2G18960_at 12.0539189895296 12.1988319813677 12.4555939132919 12.4934068864102 12.0949326605813 12.0170643292091 12.0408077163250 12.2987680833927 12.0491397232224 12.0245978752898 12.1618529780546 12.0975429884452 12.2238968359858 11.9506935864021 12.1985285368669 12.0906402138881 12.1228608923243 12.3547619362904 11.8608998378698 0.0738157782314892 0.072742105313816 0.0758740113189669 0.0753599895807773 0.0731625108801147 0.0762975586371215 0.0729400531082975 0.073755792024242 0.0800402670791825 0.0734646907258047 0.0753955302834936 0.072687169270056 0.0730623615503778 0.0834911814987513 0.0773375313954358 0.0735523658017503 0.076763373281953 0.0765824433533623 0.0744501686052624 2 2|0 +|/ 8233533 8234325 8233882.778 8228713 8234701 + gene protein_coding_gene FALSE TRUE AT2G18960.1 AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase plasma membrane proton ATPase Identical to ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to plasma membrane H+-ATPase [Lycopersicon esculentum] (GB:AAB17186.1); similar to H(+)-transporting ATPase [Solanum tuberosum] (GB:CAA54045.1); similar to plasma membrane proton pump H+ ATPase (GB:AAA32813.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.144526260978800 1.65648293991082 0.126145517440086 1 0.618265916454314 24.2708204324265 0.144526260978800 0.0533493102135545
AT4G16442_at 5.77332632638874 6.59387690807621 5.16279002414495 5.60070614360215 6.85350333740491 5.85881961833021 7.12774932362447 7.63513361187642 7.05848449177125 6.92738021607578 8.05977441503923 7.9691414818166 7.0371674797211 7.65051913764397 7.49107766157325 6.87767416580193 6.12353348817218 6.76862703768947 6.73097611629312 0.252256115976957 0.257486161042621 0.259304540531998 0.252011291365243 0.255848561092167 0.269077679951275 0.259340545357583 0.261423887402411 0.280717493810292 0.258161601279111 0.258464150593213 0.257988909623183 0.255244595749873 0.261773184170797 0.253717606724694 0.252667623573603 0.260831168504393 0.270514255535751 0.252011291365243 4 4|0 -|/ 9272086 9272940 9272498.6 9271878 9273111 - gene protein_coding_gene FALSE TRUE AT4G16442.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT2G35760.1); similar to plant integral membrane protein TIGR01569 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99118.2); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.285995505617704 -1.65627308993122 0.126188547070773 1 0.617989804976076 13.4021396449205 -0.285995505617704 0.251490067056952
AT4G26470_at 1.44510856459774 1.84968847250568 2.03640811847889 2.20198337487800 1.68431039434123 1.69546664909733 1.30649197631617 1.38848741448806 2.06427892818063 1.54041256379883 1.76793371913138 1.73359237771854 1.35780870395035 1.77856105159152 1.89767243780984 1.45837758785204 1.67204990529112 1.35152369046295 1.56911306332135 0.213494754414453 0.216491140065008 0.220995902387195 0.226229907266278 0.221092474464833 0.219011308791921 0.215231031406539 0.216822820986496 0.225039894528614 0.22513504084922 0.215575296048376 0.216360480511579 0.216259121623693 0.216037823729872 0.220214167592409 0.211640026543972 0.218480690329540 0.223697915394211 0.215922222005989 4 4 + 13371544 13372272 13371965.636 13371074 13372468 + gene protein_coding_gene FALSE TRUE AT4G26470.1|AT4G26470.2 calcium ion binding| similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT3G24110.1); similar to Os06g0609600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058046.1); similar to Os02g0198200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046205.1); similar to calcium-dependent protein kinase CDPK1 [Lycopersicon esculentum] (GB:AAK52801.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.154843221507158 1.65578591475849 0.126288492387395 1 0.617348876798779 3.37688884691767 0.154843221507158 0.0769943092649799
AT3G30150_at 1.00151340714182 1.20779887414779 1.01620326384211 1.35964535529928 0.721004444102532 0.686439583258877 0.769327603605195 1.07247965112394 0.5695218521677 1.50954903882835 1.1169750221269 1.04624275822925 1.11663408117668 0.609095393041708 0.914043779867472 0.731282098239883 1.05863104537827 1.09885448825476 1.56551289840018 0.190052395673264 0.186987154268604 0.186495810160289 0.189156628150198 0.198486325638420 0.191081474173994 0.186266538784770 0.187750908474608 0.184193323230651 0.195443630881217 0.186029137290577 0.186158744658551 0.185397216426569 0.186486328499593 0.184316650852337 0.193336302821145 0.187540952318061 0.185524933152191 0.187795459046223 3 3 - 11784715 11785566 11785063.636 11784635 11785591 - gene protein_coding_gene FALSE TRUE AT3G30150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31990.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.160174076110848 -1.65576989227669 0.126291780637792 1 0.617327799403135 2.06746707102591 -0.160174076110848 0.0871484554514242
AT3G05170_at 3.21680035171033 3.297789624495 3.01185688755256 2.95989746016702 3.38195192261156 3.24392514414600 3.02811148260413 3.28115352400428 2.83287569323212 2.47122041122433 3.32324674396143 3.42636607702317 3.07533742837252 3.17345679774684 2.95646170763522 2.89727321960922 2.79038161784514 2.84913929485018 2.84564040209476 0.224085614407887 0.224156720140879 0.230631180751112 0.231055335980601 0.224085614407887 0.237293607314163 0.231296365789826 0.233821798764491 0.224213667310132 0.229598790351233 0.224589876972182 0.224177172886574 0.224085614407887 0.224085614407887 0.224085614407887 0.224085614407887 0.229367356092776 0.229410846262882 0.224946073652253 3 3|0 +|/ 1467117 1468104 1467852.667 1466579 1468406 + gene protein_coding_gene FALSE TRUE AT3G05170.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT1G08940.1); similar to Os05g0141700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054606.1); similar to Os06g0109000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056573.1); similar to unknown [Streptomyces murayamaensis] (GB:AAO65326.1); contains InterPro domain Phosphoglycerate/bisphosphoglycerate mutase; (InterPro:IPR001345); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 0.144161566639623 1.65553351709136 0.126340300116187 1 0.61701686380214 6.06670414786012 0.144161566639623 0.0525871838824219
AT2G04540_at 4.91215134003343 5.00941413296789 4.18546262507746 4.11142887921925 5.40045607897027 4.30018088357521 4.51986658097828 3.97892455519507 4.44709174766759 4.09881322792853 3.56432512030784 4.56451888396743 4.16336864550428 4.17695063596227 4.02425272648004 4.00811848084227 3.31044587322332 3.54788687562663 4.41181832448029 0.244953560307189 0.233441252137053 0.239325218592054 0.229776541317351 0.234410327936256 0.239197913745077 0.233364032665552 0.237456152748767 0.234691690595792 0.233487265606945 0.230916320942051 0.239021864373725 0.236385372787927 0.236098525919285 0.229776541317351 0.230649932637033 0.241524524298244 0.243572738131184 0.234515269814372 2 2|0 -|/ 1581526 1582804 1581962.5 1581413 1584685 - gene protein_coding_gene FALSE TRUE AT2G04540.1 3-oxoacyl-(acyl-carrier-protein) synthase II, putative Identical to 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase) (mtKAS) (KAS) [Arabidopsis Thaliana] (GB:Q8L3X9;GB:Q9SJB7); similar to FAB1 (FATTY ACID BIOSYNTHESIS 1), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT1G74960.1); similar to KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT5G46290.1); similar to 3-oxoacyl-(acyl-carrier-protein) synthase [Magnetospirillum magneticum AMB-1] (GB:YP_421471.1); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794) -0.252482365184665 -1.65478591706106 0.126493865058239 1 0.616033610620441 8.67184788713447 -0.252482365184665 0.213227281869616
AT2G45790_at 10.3458426086002 10.6019306764455 10.3057510914748 10.4799900523644 9.81258788096222 9.37682931646697 9.94922898395438 10.1127659043472 9.44995915695714 9.84277370698753 9.72796455219063 10.0064885459391 9.49294376912057 9.6109653672911 9.79245014996383 9.54482797127252 8.46378440143138 9.5200773520833 9.48433825773227 0.125801632128220 0.122037777407342 0.129591812269863 0.124898313663327 0.122037777407342 0.129688816831034 0.125365320972452 0.122037777407342 0.131071695159416 0.122374630791967 0.124233479415277 0.123148952747232 0.130053513264652 0.133610904518550 0.125150735116619 0.122571919043141 0.149387951424848 0.122037777407342 0.126145865549352 2 2|0 +|/ 18863644 18864795 18864207.333 18862849 18865092 + gene protein_coding_gene FALSE TRUE AT2G45790.1 eukaryotic phosphomannomutase family protein encodes a phosphomannomutase, involved in ascorbate biosynthesis Identical to Probable phosphomannomutase (EC 5.4.2.8) (PMM) [Arabidopsis Thaliana] (GB:O80840); similar to phosphomannomutase [Glycine max] (GB:ABD97873.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Eukaryotic phosphomannomutase; (InterPro:IPR005002) -0.165535867458583 -1.65476154358105 0.126498874418902 1 0.616001558507084 19.6792632164372 -0.165535867458583 0.096751357868141
AT1G54960_at 3.50513643160232 3.02441453094975 3.32341665264854 3.20879277642480 2.50893901735126 2.61951495448794 3.03285879865709 3.46027780134775 3.1193336495068 3.49935110626074 3.65349905270437 3.46302128992816 2.9580672269459 3.47490318653232 3.92913729966095 3.33596450109330 3.04796018234324 3.32218205525276 3.61385468647482 0.303891310331305 0.286327771965882 0.293189551832763 0.302760367269189 0.309660834806217 0.307537251791097 0.303119517802539 0.297121587939308 0.281812019676125 0.292620573113009 0.286556473688823 0.286475600644656 0.289758646980866 0.287179518126367 0.281812019676125 0.287323510730600 0.299196344873051 0.283918966443968 0.291839649164745 1 1|0 +|/ 20506076 20507180 20506685.875 20503617 20507508 + gene protein_coding_gene FALSE TRUE AT1G54960.1 ANP2 (Arabidopsis NPK1-related protein kinase 2); kinase member of MEKK subfamily Identical to Mitogen-activated protein kinase kinase kinase 2 (EC 2.7.11.25) (Arabidopsis NPK1-related protein kinase 2) (ANP2) [Arabidopsis Thaliana] (GB:Q9FZ36;GB:O22041;GB:Q9C7M0); similar to ANP1 (NPK1-RELATED PROTEIN KINASE 1S), kinase [Arabidopsis thaliana] (TAIR:AT1G09000.1); similar to mitogen-activated protein kinase kinase kinase [Vitis vinifera] (GB:AAS19278.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.176630335925459 -1.65424316763117 0.126605455405791 1 0.615319935986723 6.48988803546122 -0.176630335925459 0.114680052389615
AT1G14970_at 1.28004228591492 0.977831914645194 0.949621129798215 1.10792954476497 1.09477012289038 1.11588179590411 1.29664888494725 1.03210295104434 1.97706208203376 2.22947027130126 1.99576192019189 2.07817104147321 1.48830757542349 1.49704273343405 2.16642854696374 1.64952266516738 1.4051205609936 2.20811854257112 1.90939107360878 0.215972671905186 0.211658133372042 0.216724279517304 0.224255531816707 0.211658133372042 0.215515213578452 0.21731782891927 0.213303597704906 0.214778817592361 0.216685593776679 0.218635419969969 0.213987212167105 0.214758370121071 0.213039212789212 0.212984451139323 0.214706426903346 0.215231585558951 0.211679729278970 0.223200250572335 1 1|0 -|/ 5162114 5163007 5162492.4 5161944 5164912 - gene protein_coding_gene FALSE TRUE AT1G14970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01480.1); similar to Hypothetical plant protein [Medicago truncatula] (GB:ABE89193.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.1535939024179 -1.65404957174974 0.126645280255379 1 0.615065403831355 3.03170374903463 -0.1535939024179 0.0747994461128344
AT1G29700_at 9.68819424197493 9.88203166647979 10.0907704352071 9.76320021038168 10.5249927949901 10.0163904456909 11.0319881359404 10.8041964506829 10.4167956124478 10.5561477843015 10.3848537128458 10.2077547736405 10.2967609117015 10.4692918042729 9.92007611065482 10.5149139401512 10.4123797835030 10.4920952861700 10.3484602341540 0.0910711213259664 0.0777449589118901 0.0835384035968913 0.0800968994921138 0.0775009388443387 0.0822707083107252 0.0798342786222273 0.0785275976930802 0.0887958001192157 0.0782832085708213 0.0790272728036574 0.0775483229711818 0.078068486074763 0.0782735608013056 0.080600934791986 0.0777219861259961 0.0842482168377746 0.0766722105747883 0.0795737515286196 1 1|0 -|/ 10385185 10386167 10385736.75 10384967 10387427 - gene protein_coding_gene FALSE TRUE AT1G29700.1 similar to similar to Zn-dependent hydrolases of the beta-lactamase fold [Crocosphaera watsonii WH 8501] (GB:ZP_00516888.1); similar to Os12g0641300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067402.1); contains domain no description (G3D.3.60.15.10); contains domain Metallo-hydrolase/oxidoreductase (SSF56281) -0.177983119401163 -1.65395131801609 0.126665496410175 1 0.614936230144083 20.6140873813361 -0.177983119401163 0.116788257812367
AT1G01370_at 2.28348984485766 1.92445951534406 2.15354297194747 2.04793398523494 1.62014533134989 2.15553547858894 1.66136805133876 1.57287320049963 1.72923637418611 2.03625861729215 2.22433295923559 2.40320665061811 2.21158340110821 2.17442884776811 2.43588123048040 1.83805229822186 2.19789332488504 1.89672571864995 2.0967923399108 0.197676373307886 0.196746454019118 0.199571183126714 0.196507436760792 0.197416306332067 0.211776174571826 0.196171185782175 0.197549901099917 0.209331298995816 0.205596719421510 0.20333716710402 0.203251106435128 0.199103354185577 0.202958496263085 0.209360964695574 0.20551806718865 0.206280098676672 0.203120534622464 0.206933398669481 1 1|0 +|/ 143780 145166 144445.222 143564 145684 + gene protein_coding_gene FALSE TRUE AT1G01370.1|AT1G01370.2 HTR12 (Centromeric histone H3); DNA binding Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.|Encodes a centromere-identifying protein histone H3 variant.Localized at centromeres in both mitotic and meiotic cells. Identical to Histone H3-like centromeric protein HTR12 (Centromeric histone CENH3) (HTR12) [Arabidopsis Thaliana] (GB:Q8RVQ9;GB:Q8LCW8;GB:Q9LNI6); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to histone H3 like protein [Arabis gemmifera] (GB:BAC79430.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.176204532755752 1.65394577754263 0.126666636473296 1 0.614928946240148 3.99084796289547 0.176204532755752 0.114075710601008
AT4G35010_at 0.443806197849594 0.806113235907127 0.782797830127697 0.861026652661884 0.732414921456163 0.847905951724122 1.05733436200566 0.716957606922422 2.25104678354202 0.68892121135737 0.555692595738395 1.11189438021246 0.630923932538051 0.954176711913922 0.544426435220867 0.730639677025604 1.31532448255253 0.967621689487985 0.73099142767302 0.204277269872101 0.205241208737143 0.20929620374576 0.210020611462853 0.208864118051866 0.205154961096684 0.204277269872101 0.205436857454342 0.216027593391447 0.213158510803151 0.211572924116697 0.204277269872101 0.212075266112433 0.204277269872101 0.207676939279384 0.206657514930931 0.217940715523933 0.205489267511779 0.214657099236519 4 4|0 -|/ 16668319 16668670 16668514 16667935 16672097 - gene protein_coding_gene FALSE TRUE AT4G35010.1 BGAL11 (beta-galactosidase 11); beta-galactosidase putative beta-galactosidase (BGAL11 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G77410.1); similar to BGAL14 (beta-galactosidase 14), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G38590.1); similar to BGAL13 (beta-galactosidase 13), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G16730.1); similar to D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like [Medicago truncatula] (GB:ABE85265.1); similar to beta-galactosidase [Gossypium hirsutum] (GB:AAS76480.1); similar to putative beta-galactosidase [Nicotiana tabacum] (GB:CAC13966.1); contains InterPro domain Glycoside hydrolase family 2, sugar binding; (InterPro:IPR006104); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -0.16116608222499 -1.65344955732955 0.126768780672426 1 0.61427663521087 1.81853990930368 -0.16116608222499 0.0893506303854471
AT3G09380_at 1.92014205903477 2.00101770999641 2.34007689291363 2.80649452933063 1.27880214127120 1.53936152322401 1.42262443316924 2.50953601127039 2.44464790048131 2.23357099275785 1.89079554256101 1.69575994575503 1.7465664744083 1.91048019040757 1.57667810300707 1.87704636358425 1.88181704019728 1.83110626168439 2.3066957066751 0.197914491543620 0.196096299543395 0.198473880947161 0.206398888976715 0.199417110406943 0.202381633039838 0.198676947840066 0.203551370816234 0.196170532706156 0.196905009864876 0.204807907325198 0.197009926101203 0.202069979121959 0.201560509522139 0.200732211898312 0.205204985235535 0.20036480557381 0.199681920593247 0.206484244434556 3 3|0 -|/ 2885287 2886031 2885570.9 2885271 2886122 - gene protein_coding_gene FALSE TRUE AT3G09380.1 Identical to UPF0195 protein At3g09380 [Arabidopsis Thaliana] (GB:Q9SR25); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68310.1); similar to UPF0195 protein At3g09380 (GB:Q9SR25); contains InterPro domain Protein of unknown function DUF59; (InterPro:IPR002744) -0.249584954060153 -1.65340872893856 0.126777188228811 1 0.61422296876193 4.04204996594564 -0.249584954060153 0.210056874150170
AT3G43990_at 1.53664654361971 1.92059223203354 1.64372558920332 2.52356323168843 1.43739643879305 1.43572960701096 1.39156798742033 1.9945368788396 2.26061463495602 2.56703311869525 1.86141131556986 1.30494444858634 2.29573397952958 2.07952159375737 1.43066434096662 1.65862370182084 1.62767805271245 1.92092417458188 2.06419819750649 0.211700402919331 0.218726525029262 0.219759140647411 0.217904501521361 0.215948094513221 0.213628614145033 0.212761221709216 0.215027743681510 0.21707046822983 0.221612658127917 0.216821671152207 0.214499441898770 0.216789158763861 0.217564230027195 0.227115310590628 0.211700402919331 0.217567006995135 0.215312280168304 0.217650430460674 3 3|0 -|/ 15793545 15795108 15794647.1 15793525 15796165 - gene protein_coding_gene FALSE TRUE AT3G43990.1 bromo-adjacent homology (BAH) domain-containing protein similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23120.1); similar to Os01g0527400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043228.1); similar to Bromo adjacent re (GB:ABE92116.1); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.237788238291495 -1.65218587904215 0.127029232366682 1 0.612615952336994 3.77032965590605 -0.237788238291495 0.196178878819474
AT4G28590_at 1.82965837760407 1.86947015585062 1.72610360054642 1.16131015414209 1.74680631159167 1.55099448740621 1.89451707421417 1.86389335599108 1.58691888960826 1.41502400643404 1.1375774782035 1.23234430785856 1.18954346773786 1.65463660791488 1.80871946501073 1.45514011647385 0.977497202934575 1.36939182822992 1.12008542072753 0.198737327434259 0.205750149238638 0.200659239601801 0.198737327434259 0.204096309885652 0.205340046796796 0.208516546103233 0.209829888045030 0.214820549080017 0.204021592568363 0.198950494045993 0.199436337142772 0.213163794896861 0.198737327434259 0.204936841364167 0.199096297544949 0.218000571225618 0.207283618826982 0.209477302294776 4 4|0 -|/ 14125583 14126489 14126049.7 14125235 14126841 - gene protein_coding_gene FALSE TRUE AT4G28590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31840.1); similar to Cecropin [Medicago truncatula] (GB:ABE79077.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.16949211606059 -1.6518882125994 0.127090652324492 1 0.612224873300938 3.06890206377767 -0.16949211606059 0.103812130243
AT1G71070_at 6.18761008971878 5.99247499751888 5.69926046964385 5.90065814805872 5.70068561177613 5.81833846542008 6.79838108772823 6.8083104933164 4.75585612550235 5.13431421421703 6.36066021663806 6.00067122808535 5.53040521603494 5.65744395304358 5.99024472209283 5.31212682029043 4.60997940060641 5.35764080507684 5.7791884950257 0.234536336882485 0.228682132144692 0.228682132144692 0.236214972398179 0.231410712327470 0.240325619836618 0.235046774376905 0.231170510507050 0.267933274946310 0.228682132144692 0.239869978891028 0.228682132144692 0.228682132144692 0.245978253214813 0.232359619480359 0.228682132144692 0.251396873955343 0.242204359158075 0.245757183410579 1 1|0 -|/ 26811204 26811740 26811421.3 26810850 26813166 - gene protein_coding_gene FALSE TRUE AT1G71070.1 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT5G39990.1); similar to putative xylosyltransferase I [Oryza sativa (japonica cultivar-group)] (GB:BAB40033.1); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) -0.143840779847010 -1.65156335448697 0.127157713056600 1 0.611798114706816 11.5259729988053 -0.143840779847010 0.0526551387287192
AT3G24540_at 1.44753119704111 1.72740044116501 1.89729196224684 1.41288676658656 0.937938791377886 1.40378270662545 1.41383589466965 1.44817115267649 1.78453273891240 2.14699575093602 1.62524909527681 1.41990968454103 1.73699038103510 1.46321005071557 1.88089740896226 1.56134746197962 2.14106997925754 1.86999146045750 2.02013263881773 0.199106150858360 0.209518354075663 0.203995480219597 0.203735455973874 0.200363639614366 0.201247753996858 0.204399037876106 0.201906665878871 0.206245884911725 0.204458481751582 0.198398896500330 0.202134628565733 0.207342327863438 0.199599776493263 0.205837477946195 0.200903611330382 0.206533615010809 0.200811325395372 0.199127696628229 3 3|0 +|/ 8954498 8955544 8954972.571 8952910 8955628 + gene protein_coding_gene FALSE TRUE AT3G24540.1 protein kinase family protein similar to ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G24550.1); similar to receptor protein kinase PERK1 [Brassica napus] (GB:AAK21965.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.183906733644707 -1.65061618219677 0.127353418017535 1 0.610554106399067 3.30921498063207 -0.183906733644707 0.126124044874815
AT4G21070_at 1.25482123313917 1.11425635625102 1.44286294005560 1.8331337348098 1.05162437069980 1.54408667404555 1.40995115938389 1.66655560149202 1.74031063953553 1.28687041462724 1.95456478821479 1.96314359292390 1.47415877468338 1.71899544373478 1.94321112345693 1.52438944161717 2.06952026823707 1.51562009266898 1.52552082491364 0.184448468214783 0.181956012044242 0.189703265402527 0.192056024538885 0.188356574649779 0.187912434989582 0.184946613670468 0.18177404874823 0.196534738070807 0.190906941737858 0.183596836143252 0.181721362862034 0.181457241715134 0.192207884649048 0.184172806395171 0.183218412738259 0.181416848547627 0.184262884992441 0.182872804240507 4 0|4 /|+ 11251675 11252440 11251974.1 11248089 11252735 + gene protein_coding_gene FALSE TRUE AT4G21070.1 ATBRCA1 (BREAST CANCER SUSCEPTIBILITY1); ubiquitin-protein ligase similar to ATBARD1/BARD1 (BREAST CANCER ASSOCIATED RING 1), transcription coactivator [Arabidopsis thaliana] (TAIR:AT1G04020.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44144.1); similar to Os05g0512000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056019.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain BRCA1; (InterPro:IPR011364); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.179706995001407 1.65047685238901 0.127382228926437 1 0.610371145719388 3.0586703755934 0.179706995001407 0.119950070824380
AT1G03280_at 7.88915112611406 7.91885414778844 8.12168337015019 8.04622016470538 8.24296649624694 8.20198585104331 7.44367216739244 7.76248707526335 7.78924846651988 8.10017896342581 7.76323252346926 7.66800516646787 8.27912177677396 7.87102635814394 7.62432430677589 8.27656103626447 7.60075849755917 7.76499272844122 8.00466171397646 0.176796728922475 0.18762905831564 0.179146232011832 0.185065740719872 0.178877017172395 0.190821359333775 0.182678053118478 0.181096866130228 0.184533639773137 0.188595373462762 0.178835132090689 0.182730295913748 0.182724782072665 0.180017586821848 0.172505385156704 0.175771080984569 0.188223673656745 0.177168573189311 0.177071081420725 1 1|0 +|/ 805600 806732 806188.3 803035 807066 + gene protein_coding_gene FALSE TRUE AT1G03280.1 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein similar to transcription initiation factor [Arabidopsis thaliana] (TAIR:AT4G20340.1); similar to Os08g0343300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061594.1); similar to transcription initiation factor IIE, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA91357.1); contains InterPro domain Transcription factor TFIIE, alpha subunit; (InterPro:IPR002853); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.145489629663238 1.64988694361476 0.127504275618861 1 0.609596604621337 15.8637271401102 0.145489629663238 0.0573694673666495
AT3G06990_at 2.49351887495499 2.43878566576708 2.28486919822476 2.70938078233211 1.83228879325546 2.0474319915782 2.20340843140792 2.06817402305668 2.96518205003699 2.28480023570456 2.53361885353122 2.3081634266859 2.27168457217340 2.68941360882841 2.23514342657229 2.36291629087133 2.15992321049234 2.57705045898147 2.633587220371 0.222677294411851 0.217174369421281 0.222976398073386 0.216748990149223 0.212373004412609 0.223791973841413 0.214483515172578 0.227870786798635 0.224989317643545 0.223711673470146 0.210963092042852 0.218008634624074 0.218586295404612 0.215928616698938 0.214502571575830 0.215942276782908 0.224757964731280 0.210789836736950 0.230218924986476 3 3 + 2207495 2208012 2207809.364 2206393 2208064 + gene protein_coding_gene FALSE TRUE AT3G06990.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07000.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G45730.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.159048164234752 -1.64978989765611 0.127524363474090 1 0.609469199740302 4.76978008659943 -0.159048164234752 0.0861424242697672
AT3G19990_at 6.48409762271252 6.75316406996779 6.85008583518083 6.8730013620959 6.71209958875662 6.57314235961678 7.14478894803424 6.59806252004435 6.54152705458912 7.20509369568371 6.40880608510315 6.6169671038526 6.2661437929837 6.63814234737352 6.33308005086249 6.33126638806217 6.82705952157479 6.65749945949279 6.83628655642264 0.190397483829213 0.187588067925741 0.194017713792493 0.193461862394244 0.193129185301212 0.197424571000176 0.193618679253277 0.191607230303616 0.197414219394974 0.192101016540927 0.196170810892446 0.194919051294133 0.199126549075153 0.192160945337085 0.191738449745518 0.191250727659047 0.208368467059435 0.190141016486168 0.193200208516890 3 3 + 6966379 6967080 6966753.364 6965653 6967254 + gene protein_coding_gene FALSE TRUE AT3G19990.1 binding similar to hypothetical protein BB0394 [Bordetella bronchiseptica RB50] (GB:NP_886943.1); similar to Os02g0828500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048601.1); similar to Os02g0828200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048598.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.172022256172933 -1.64977867262933 0.127526687159757 1 0.609454463457155 13.4339751362486 -0.172022256172933 0.108230546865913
AT4G35500_at 3.54748023644557 3.01707586325481 3.23088864010233 3.41297844903993 3.75081997548089 3.4676905713592 2.86850530657829 2.25386240616143 3.05815071500283 2.83810885781253 2.72766356674906 2.71903491222798 2.62216784901908 2.47407469860646 2.55369645413551 2.82805026460127 3.04206135779345 2.36627910944491 2.52016911667764 0.208495620117513 0.208495620117513 0.216424776688662 0.21623814518907 0.211637486381579 0.215401886121282 0.210942769049051 0.210967733174228 0.216066564839713 0.208495620117513 0.212832257268822 0.21148585099486 0.215331279591272 0.211116128984115 0.221757357245593 0.211246680591595 0.209009236176285 0.212543482388751 0.21319485194996 4 4|0 +|/ 16858709 16859311 16859049.8 16857304 16859608 + gene protein_coding_gene FALSE TRUE AT4G35500.1|AT4G35500.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17530.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to Os09g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063873.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17530.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to Os09g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063873.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.202507876313389 1.6496300513089 0.127557456708352 1 0.609259357820945 5.92971505925441 0.202507876313389 0.152094637132666
AT3G09730_at 1.56967477042942 1.89216106739610 1.0649513601961 1.21500028516993 1.09422626098893 1.23021727561917 1.45268975567763 1.38096361248393 1.75622936455724 1.49361385651869 1.74148845549103 2.24272366508167 1.38017133603946 1.32132848283034 2.43629339422797 1.79879129815472 1.12071344120295 1.43209689745643 1.43135421828212 0.203489188094383 0.203648135124796 0.199018439072641 0.196737862159659 0.200214146120834 0.202787255193316 0.199468665856502 0.200961515148438 0.197888290401309 0.211050481407612 0.197840618428751 0.196737862159659 0.209243517881717 0.198511205603809 0.201013808611382 0.202709499799303 0.204495650278236 0.200061224907006 0.205239722225214 3 3|0 +|/ 2985338 2986232 2985784.9 2984015 2986265 + gene protein_coding_gene FALSE TRUE AT3G09730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61040.1) -0.149485890572674 -1.64887447390992 0.127713988255185 1 0.608267611777128 2.98478555737678 -0.149485890572674 0.0670573507631895
AT3G25230_at 6.89322411585043 7.22532565490354 6.02166987043542 6.5927347906858 7.06601194474686 5.98864151842705 7.78932572560156 7.87307751339322 6.23301220536459 6.44744028858294 7.16829052223936 7.42046743141709 6.75703787381608 6.75452155457603 6.75165986773143 6.92864150801435 6.68650294902227 6.57572219687751 6.41632778412405 0.194531486593565 0.193800262188477 0.201901495512292 0.194127639009825 0.207087382654462 0.193836053653392 0.193126069667319 0.199106897826685 0.197000886518840 0.199112231274095 0.190242701724981 0.201983234230912 0.197283562025214 0.202456247895401 0.210707645708660 0.190242701724981 0.211883756886508 0.204268172027141 0.202064122188399 3 3 + 9191283 9192008 9191649.455 9189418 9192656 + gene protein_coding_gene FALSE TRUE AT3G25230.1 ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Identical to 70 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (Peptidylprolyl isomerase ROF1) (ROF1) [Arabidopsis Thaliana] (GB:Q38931;GB:Q38949;GB:Q9LSF3); similar to peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G48570.1); similar to peptidylprolyl isomerase [Triticum aestivum] (GB:CAA68913.1); similar to 70 kDa peptidyl-prolyl isomerase (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (GB:Q43207); similar to Os08g0525600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062292.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.256605829712748 -1.64862719408232 0.127765253767169 1 0.607943096121477 13.5542258487483 -0.256605829712748 0.219182320938253
AT4G26010_at 1.29495611404317 1.49418082874295 1.45343850524926 1.11585370800530 1.08311124443768 1.36908449947280 1.14628783383660 1.70044467378421 1.53802160038756 1.01627321223132 1.14542755384838 0.726953358531013 1.15627549072150 0.950463667405417 1.41563115214303 0.788405729356362 1.10714351605043 0.86036801122412 1.14897141081579 0.220462810191032 0.224330027125521 0.218803485226788 0.227212411376276 0.222664853958468 0.224578843966976 0.222511554422322 0.218812832278371 0.220466879810061 0.224034715894685 0.225364857062871 0.231891267460056 0.224538816953622 0.223774618817272 0.225882813193893 0.223539541560559 0.22412148982753 0.229522917479652 0.218998380280412 4 4 + 13201115 13201641 13201315.545 13200602 13201950 + gene protein_coding_gene FALSE TRUE AT4G26010.1 peroxidase, putative Identical to Peroxidase 44 precursor (EC 1.11.1.7) (Atperox P44) (ATP35) (PER44) [Arabidopsis Thaliana] (GB:Q93V93;GB:Q9SZH5); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT1G34510.1); similar to cationic peroxidase [Stylosanthes humilis] (GB:AAB67737.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.184591943939334 -1.64848316354763 0.127795122278156 1 0.607754091496498 2.45879749314062 -0.184591943939334 0.127465595986719
AT1G74000_at 2.14006141118943 1.78285381758951 1.63258858160385 1.99909952750042 1.30590372229141 1.67048070721213 1.45179995940949 2.07674187745499 1.44956896610113 2.21566528541841 1.23577405918436 1.6018911690248 2.10486283522953 1.62279562541889 1.81626952247426 1.28869981818543 2.0436424839371 1.8344863859986 2.00259845636119 0.200799209535637 0.203897917435385 0.206997223937603 0.211676097625317 0.206395438127958 0.207952471118435 0.200799209535637 0.217203678662164 0.206635951141232 0.204315427590829 0.208856687019708 0.204157911089570 0.202906953714291 0.200951068174418 0.206411347190499 0.204219212071086 0.205942109942715 0.205167618949842 0.205010038107417 1 1|0 -|/ 27832931 27833795 27833204.7 27832803 27835092 - gene protein_coding_gene FALSE TRUE AT1G74000.1 SS3 (STRICTOSIDINE SYNTHASE 3) encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis. Identical to Strictosidine synthase 3 precursor (EC 4.3.3.2) (SS-3) (SS3) [Arabidopsis Thaliana] (GB:P92976;GB:Q9C9C1); similar to SS2 (STRICTOSIDINE SYNTHASE 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT1G74020.1); similar to strictosidine synthase (GB:AAB40595.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.203285481810427 -1.6481789357059 0.127858232273806 1 0.607354897994301 3.548856353894 -0.203285481810427 0.153365522394577
AT1G77360_at 1.69360155423199 1.53429563365207 1.68564688832000 1.7655936345509 1.36483488459982 1.50205416425787 1.08334070296648 1.39931861898114 1.49181031280024 1.38078373329546 1.56276583800439 1.41273539812230 1.41683868424396 1.53534516512610 1.46380655460252 1.62897966080488 1.63008904120577 1.62054178695708 1.28821584076026 0.213105783972895 0.210754134513901 0.210754134513901 0.212489006646481 0.210754134513901 0.217696580549561 0.211109202543847 0.214649924318259 0.216177349374214 0.218806703873685 0.213745602484048 0.214803771004793 0.217763010300003 0.214365599464992 0.221674719306810 0.21575245562961 0.211549118718087 0.228954565649917 0.219394292067245 1 1 - 29076879 29077433 29077151.818 29076877 29078322 - gene protein_coding_gene FALSE TRUE AT1G77360.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G71060.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE81252.1); similar to Os03g0761300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051352.1); similar to Os01g0505500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043145.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.149422201327808 1.64785112414502 0.127926265506852 1 0.606924805631727 2.96399795773771 0.149422201327808 0.0671222430350395
AT3G53400_at 7.43346345235058 7.01462459263474 7.71792862737668 7.26876473682896 7.47238468481498 7.01551528976361 7.45664721327449 6.79733272574953 6.68433485978743 6.10757948510923 6.13350564349308 6.9103766479212 6.87031752718637 7.36556336713907 5.92789957973131 7.6840216088959 6.72343676994187 6.43170735755195 6.73586845303844 0.170942311695376 0.169670725141391 0.175592766747254 0.168572160920059 0.178061336287444 0.173917063573685 0.179265810203825 0.172516824611248 0.191292379400736 0.184241857268754 0.169212106561089 0.172123400343058 0.172737163050896 0.180705836308226 0.178132126234045 0.172692619472461 0.176887674483286 0.181885907387606 0.179951516915214 3 3 + 19810313 19810864 19810588.182 19809129 19811114 + gene protein_coding_gene FALSE TRUE AT3G53400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03190.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32814.1); contains domain ARM repeat (SSF48371); contains domain no description (G3D.3.40.50.1860) 0.219861984390644 1.64784268796740 0.127928016755035 1 0.606913737912169 13.904639913038 0.219861984390644 0.174827991571743
AT3G62000_at 5.77223901378985 5.41951497792577 5.18692075671306 5.06684388871903 5.5177722957789 5.53617232230016 5.7620055712745 5.48095459427476 3.86805977832593 4.46696373040203 4.58543883806538 5.02207181227986 4.90029197691104 5.15241978520268 4.98182572768669 5.05900148218016 4.81439004101435 5.1170422437525 4.74578063218921 0.217884313831311 0.212113731621607 0.210039822449023 0.209127893087844 0.216429046043271 0.219821102926141 0.211016536660994 0.205779918322105 0.216195723676668 0.208207696620222 0.224070366669046 0.208677574356232 0.212572541903104 0.213688950584486 0.212315621824535 0.205949006915495 0.218226896195756 0.206436550248546 0.208121707057534 3 3|0 -|/ 22970434 22971786 22971198.333 22970176 22972184 - gene protein_coding_gene FALSE TRUE AT3G62000.1 O-methyltransferase family 3 protein similar to O-methyltransferase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G61990.1); similar to Os08g0154000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061012.1); similar to O-methyltransferase [Nostoc sp. PCC 7120] (GB:NP_489219.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) 0.156020483987882 1.64754514373926 0.127989796937476 1 0.606523399605447 10.1249670702765 0.156020483987882 0.080829851064081
AT3G30650_at 0.383157152731310 0.765599276207365 1.05022768681093 0.877653834074059 1.03682204348285 0.926452176520544 0.63387175023487 0.9518067776584 0.7210610835884 0.59841144307904 0.82745963219393 0.736492420673336 0.186697655086353 1.13006035611480 1.26899971646039 0.744222577878686 0.916411698284466 0.693621696639151 1.01123153663143 0.217563211592372 0.215726082952974 0.214105989486324 0.223442303041485 0.222795914830073 0.218569853590834 0.216989242061899 0.215334601987903 0.215723164222075 0.227698510679076 0.215762926013899 0.217984424342639 0.232779814317928 0.219498237708624 0.223329244381583 0.220085638543046 0.220564615771319 0.226205363217790 0.220292807694705 3 3|0 +|/ 12203297 12204571 12203926.5 12203280 12204656 + gene protein_coding_gene FALSE TRUE AT3G30650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10175.1) 0.162637280373772 1.64699705917833 0.128103667012654 1 0.605804490122874 1.62314737401471 0.162637280373772 0.0930815176591156
AT2G28070_at 5.39076191213214 5.30833358668631 5.40780853600304 5.08919711910665 5.52406251015526 4.85353518498935 4.57989079616902 4.67431279822921 4.92189654737107 5.40689238509983 4.56660964137508 5.00737665676905 4.96722827667486 4.41799845549751 4.69458751262999 5.11602267360227 4.63222632090293 4.63458482654261 5.74392928139621 0.205024404077423 0.202183131709457 0.201742304588778 0.205025687013839 0.203419837980171 0.209817383632536 0.204136738534825 0.200403332322502 0.216252140050727 0.200403332322502 0.206645921619121 0.200403332322502 0.207936701227907 0.207245150895994 0.200403332322502 0.200403332322502 0.213734910567748 0.206905110272381 0.204766088953093 2 2|0 +|/ 11965836 11966805 11966245.889 11963509 11966859 + gene protein_coding_gene FALSE TRUE AT2G28070.1 ABC transporter family protein similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to Os03g0859500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051967.1); similar to ABC transporter family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG00010.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.186333689098504 -1.64656129227513 0.128194266098780 1 0.605233001558846 10.1595638221614 -0.186333689098504 0.130289599595688
AT1G32740_at 2.32893695974450 1.54781173862143 1.37080365807537 1.06761791008003 2.78691135222861 2.96883232363043 1.55199543130479 1.33021185986238 0.966756932079238 0.844228918390862 1.39941533227598 1.54012973800262 0.652064743116842 1.12631007046146 1.19914512770987 0.789614926255263 0.937527071495962 0.743499881972427 1.19280990790724 0.232926001729264 0.232575844009753 0.218940765036537 0.228407403694379 0.227287702294681 0.24280498133276 0.228582364762365 0.233631115339495 0.233885993799541 0.224869657800325 0.223901512177777 0.220772641755913 0.221147077319816 0.225961845563807 0.222978892903724 0.219682615765892 0.232631180539966 0.226397645633351 0.221726302275517 1 0|1 /|+ 11845572 11846014 11845829.9 11844857 11846327 + gene protein_coding_gene FALSE TRUE AT1G32740.1 protein binding / zinc ion binding similar to ATP binding / protein binding / shikimate kinase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G47050.1); similar to hypothetical protein 40.t00029 [Brassica oleracea] (GB:ABD65150.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.203000211119597 1.64648272830315 0.128210606162764 1 0.605129977566784 2.89400446129532 0.203000211119597 0.153264444283312
AT1G01110_at 2.18040127849509 1.44191790393514 1.63664623824244 1.61639868021802 1.68759467242003 1.76970688728549 1.58447655230421 1.37873994519415 1.76744809134944 1.66239576659021 2.16111601321238 2.28636313643823 2.13029687660753 2.24825276878983 2.31341455083787 2.26464216489393 2.06177325095810 2.17026384398587 2.14602387271874 0.185127214235655 0.180393906487516 0.172879062853785 0.179835580392063 0.172407575550984 0.178106412558693 0.176781620754846 0.177034676296885 0.185328758286481 0.186833526145495 0.189520012909268 0.186011154413138 0.175674450602168 0.175803685936767 0.180017804392876 0.176309822713522 0.182518169085949 0.177471830297132 0.176874089399162 1 1 + 53904 54438 54142.273 52869 54685 + gene protein_coding_gene FALSE TRUE AT1G01110.1 IQD18 (IQ-domain 18) similar to IQD17 (IQ-domain 17), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G00820.1); similar to putative SF16 protein [Oryza sativa (japonica cultivar-group)] (GB:AAV33309.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to Os01g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044716.1) 0.188547724194340 1.64642338078533 0.128222950733171 1 0.605052154702073 3.69355422106262 0.188547724194340 0.133469650621237
AT3G44960_at 1.35768016395860 1.00146304140245 1.10625607836093 0.88333700968857 1.22635163633285 0.97138229588556 0.657574149109138 0.872178065777211 1.01165883957694 1.01185979156037 1.44101750919770 1.48938978078643 1.63051349024410 1.12185601075587 1.49577620404044 1.55563046528321 1.63256419630980 1.41709481737410 1.64478516764840 0.190271703393504 0.192921141066193 0.195070264527792 0.192721612192109 0.190271703393504 0.190271703393504 0.203732410520581 0.195310342906160 0.200954824996006 0.193863312409226 0.19312466361099 0.190271703393504 0.193762206025468 0.207543584852836 0.192945180986906 0.196595922361489 0.202183611305037 0.198787251625941 0.190271703393504 3 3|0 +|/ 16438841 16440080 16439620.2 16438780 16440136 + gene protein_coding_gene FALSE TRUE AT3G44960.1 unknown protein 0.162410138162757 1.64624034999983 0.128261028661550 1 0.604812154994096 2.35740192615318 0.162410138162757 0.0928140668325853
AT1G06060_at 7.6584365435845 7.89693532739682 8.04034055512606 7.7214598334603 8.23494550111295 8.44451772953564 7.62703393352877 7.96748671397653 8.01462085006622 7.81899906338618 8.07458416739757 7.50934260671587 8.05100231364955 7.83408345178463 7.77967101386411 7.83831454515479 7.96468875522958 7.94457851720085 7.76725801184108 0.142069195288014 0.140108894032385 0.143736674673640 0.148933527965759 0.139397955592578 0.139675212090734 0.139397955592578 0.139397955592578 0.145451756200508 0.156643950720842 0.147059721106230 0.147149314459043 0.141976030667672 0.141219730044881 0.148294213172558 0.142599373301748 0.145501772959724 0.140439851721569 0.143039711690969 1 1|0 +|/ 1833454 1834286 1833848.125 1832942 1834860 + gene protein_coding_gene FALSE TRUE AT1G06060.1 RanBPM-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61150.6); similar to Os01g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044411.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53233.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.165208319065271 1.64622098634704 0.128265057684152 1 0.60478676522486 15.8196407571181 0.165208319065271 0.097648721916013
AT3G56640_at 3.10048331905917 3.05897664246797 2.99585871298557 2.83789545490222 3.08057621483556 3.13662796975949 2.58401911971184 2.84002648659211 3.16595443638159 2.50014752702685 3.11946918317320 3.42835693437276 3.2092845447495 2.63679631083693 3.04572794596142 2.74661125529210 2.89012058580692 3.05584693340072 2.87212360460591 0.186906911488812 0.193774797700256 0.194318200175809 0.191931763563682 0.187181220680843 0.193745087112028 0.186906911488812 0.186906911488812 0.190575607725868 0.189993454695699 0.191974622855776 0.186906911488812 0.195284451845730 0.188884617118801 0.196198925380968 0.186906911488812 0.195134403999649 0.187112240433304 0.196720893184259 3 3 + 20994770 20995217 20994959.818 20992946 20995315 + gene protein_coding_gene FALSE TRUE AT3G56640.1 exocyst complex subunit Sec15-like family protein Identical to Probable exocyst complex component 6 (Exocyst complex component Sec15) [Arabidopsis Thaliana] (GB:Q9LXX6); similar to exocyst complex subunit Sec15-like family protein [Arabidopsis thaliana] (TAIR:AT4G02350.1); similar to Os10g0415200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064599.1); similar to Exocyst complex component 6 (Exocyst complex component Sec15A) (Sec15-like 1) (GB:Q8TAG9); similar to Os03g0163500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049059.1); contains InterPro domain Exocyst complex subunit Sec15-like; (InterPro:IPR007225) 0.143657359262008 1.64614301820763 0.128281281761312 1 0.60468453451567 5.88560894055789 0.143657359262008 0.0534390913914893
AT3G43700_at 3.80757705823961 4.08031424268856 3.59005152423406 3.66627448726351 4.31219149723727 4.0070441791437 3.82415550290085 3.97409184133822 3.76643234342676 3.49365976779770 3.9723764330657 4.37809018673676 4.16170793220092 4.00449142175157 3.87194250825972 3.79738407606501 4.06217942683835 4.29899403704354 3.94004908649819 0.186402533957449 0.189154676502662 0.194814761268862 0.183233484766014 0.196904620592018 0.193605154309676 0.190607235944594 0.189666830271460 0.190810094734134 0.185517496860912 0.189613958473959 0.18460004890813 0.186228308534753 0.183520572269038 0.193538209002163 0.186193540636731 0.198825668865951 0.185491561977556 0.194687381197051 3 3|0 +|/ 15613733 15614461 15614149.2 15612855 15614875 + gene protein_coding_gene FALSE TRUE AT3G43700.1 ATBPM6 (BTB-POZ AND MATH DOMAIN 6); protein binding similar to ATBPM5 (BTB-POZ AND MATH DOMAIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT5G21010.1); similar to Os07g0167200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058976.1); similar to Os03g0792500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051524.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.153685557091069 1.64564188473077 0.128385604074729 1 0.604027520871059 7.80860061762376 0.153685557091069 0.0765737659530143
AT2G23150_at 3.45292829457875 3.40454456376904 3.44205739768475 3.23637829774254 2.74169795710627 2.83228603075624 3.40765525723348 3.9546561820707 2.53280796792868 2.23054497631584 2.86295866459196 2.29620951510961 2.08892331351425 2.49533233618843 2.51109385747656 2.35978477207311 2.54319200875436 3.14920738193063 2.38486133506206 0.23892140844404 0.247575204354007 0.236821509428275 0.238634553548202 0.235138613929786 0.242704797096492 0.241137877693303 0.246983951213509 0.24549816065364 0.248656543135562 0.237303643103206 0.236949408886466 0.239557867732267 0.237702703270509 0.23820222135376 0.235138613929786 0.246025615961987 0.235138613929786 0.238211979631383 2 2|0 -|/ 9863515 9864137 9863868.2 9863272 9865654 - gene protein_coding_gene FALSE TRUE AT2G23150.1 NRAMP3 (NRAMP metal ion transporter 3); manganese ion transporter/ metal ion transporter Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. Identical to Metal transporter Nramp3 (AtNramp3) (NRAMP3) [Arabidopsis Thaliana] (GB:Q9SNV9;GB:O22192); similar to NRAMP2 (NRAMP metal ion transporter 2), metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G47240.1); similar to NRAMP5 (NRAMP metal ion transporter 5), metal ion transporter [Arabidopsis thaliana] (TAIR:AT4G18790.1); similar to ATNRAMP4 (Arabidopsis natural resistance-associated macrophage (NRAMP) protein 4), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT5G67330.1); similar to Nramp metal transporter homolog [Thlaspi japonicum] (GB:BAC80141.1); similar to ferrous ion membrane transport protein DMT1 [Glycine max] (GB:AAO39834.1); similar to Nramp metal transporter-like protein [Thlaspi caerulescens] (GB:AAW47269.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) -0.168120757743935 -1.64524255390637 0.128468787722217 1 0.603504057186396 5.76956340977125 -0.168120757743935 0.102681527733049
AT1G29860_at 1.98310672818036 2.19523724991053 2.27965787528843 1.95550731401954 1.61997010097358 2.63062903850645 1.34530402145938 1.31744994415010 1.53675842848809 1.77510382561170 1.63047852169301 1.51504235671884 1.2013704642342 1.84447209939953 1.69815564450309 1.56978195954545 1.65046884263065 1.25977400711453 1.18275350842400 0.230388889794311 0.227897518171725 0.227318079707709 0.226494078711394 0.224335272898873 0.234362996883027 0.233667929620657 0.23650224709814 0.235449616589089 0.234057798507441 0.240617205396418 0.226866661690459 0.224335272898873 0.229533282345231 0.231046114520345 0.224673377355473 0.231843564162590 0.236656625170709 0.225272950363617 1 1 + 10454745 10455586 10455361.182 10454466 10455769 + gene protein_coding_gene FALSE TRUE AT1G29860.1 WRKY71 (WRKY DNA-binding protein 71); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 71 (WRKY DNA-binding protein 71) (WRKY71) [Arabidopsis Thaliana] (GB:Q93WV4;GB:Q9FXG1); similar to WRKY28 (WRKY DNA-binding protein 28), transcription factor [Arabidopsis thaliana] (TAIR:AT4G18170.1); similar to WRKY54 [Glycine max] (GB:ABC26920.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.229577164538614 1.64522320138398 0.128472820214021 1 0.603478690717301 3.4380569046383 0.229577164538614 0.187369560502894
AT3G20660_at 1.28531176956668 1.50815362830264 1.36727759367989 1.09953291313619 1.58340813262901 1.34385553530302 0.98721951355697 1.02549949917256 1.22861254478948 0.931019116661897 1.76226468812211 1.61673509301095 1.67031273208852 0.919006199322373 1.45947387277222 1.51508595225353 1.23152728470724 1.56922574705757 1.77243570646418 0.178000665756662 0.1772793774609 0.1772793774609 0.185515870250093 0.183364915870812 0.177702894458129 0.178900768036860 0.182909955572032 0.185865751347519 0.179274960145246 0.180053545629591 0.178944691201718 0.179816372135566 0.178646177687411 0.1772793774609 0.1772793774609 0.185904581530378 0.17907551096336 0.1772793774609 3 3 - 7225368 7225848 7225660.091 7225141 7228601 - gene protein_coding_gene FALSE TRUE AT3G20660.1 carbohydrate transporter/ sugar porter similar to sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT1G73220.1); similar to OSJNBb0015D13.11 [Oryza sativa (japonica cultivar-group)] (GB:CAI44640.1); similar to H0105C05.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68069.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.152118632282804 1.64513627639894 0.128490934187953 1 0.60336475520143 2.66435385757104 0.152118632282804 0.0734609428843203
AT1G26150_at 8.90398522999957 8.91980069399415 8.81760321565365 8.74731920099838 9.09267003673773 9.03260768206459 9.30429353640087 9.2116406804313 9.48926930149362 10.1858247754435 10.0310592912393 9.73575495721897 9.8725131317737 9.98166907914976 9.47932045385817 10.1388681877321 9.79087861915445 9.84984298294888 10.2290969095684 0.0891020830141777 0.0905520875228623 0.0904464630789732 0.092189664925895 0.090136366896602 0.0921729919053768 0.0882901239363723 0.0936315374952593 0.0940785675734799 0.087266862968386 0.0897940306880584 0.0888314370153274 0.0912175248008115 0.0939571824628052 0.090061508199211 0.0873920830983661 0.0975018004947963 0.0881887460993161 0.0893510807042949 1 1|0 -|/ 9039883 9040558 9040229.222 9039615 9043275 - gene protein_coding_gene FALSE TRUE AT1G26150.1 protein kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38560.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70139.1); similar to Os01g0110500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041798.1); similar to protein kinase family protein [Musa acuminata] (GB:ABF70054.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.135227662813491 -1.64503043579274 0.128512992975953 1 0.603226030943661 18.9177660345615 -0.135227662813491 0.0228156740106254
AT1G26300_at 4.65044377773158 4.84518060054808 5.0355417277928 4.7728385896786 5.09919859859953 4.77692625937469 4.66519613966723 4.57026029824112 4.52328036070796 4.11399205851967 4.63254864306022 4.58204600654031 4.47935775845086 4.43501227346368 4.41470396034147 4.00402406526412 4.29672598645259 4.5035597260581 4.39775748291927 0.158701833111210 0.154300695206542 0.153006672076046 0.150656599042882 0.158140889537944 0.160336908833199 0.151332748678263 0.152023628927183 0.154274598327783 0.151420988881996 0.150937863936191 0.149680923562355 0.147388981009446 0.156793304776726 0.152839597504269 0.150469601752454 0.151858006605318 0.149653177145118 0.151052513865173 1 1 - 9096013 9099610 9097874.909 9095887 9099741 - gene protein_coding_gene FALSE TRUE AT1G26300.1|AT1G26300.2 BSD domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69030.1); similar to Os04g0662000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054153.1); similar to Os02g0726400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047990.1); contains InterPro domain BSD; (InterPro:IPR005607) 0.155921712443011 1.64484040278353 0.128552607167083 1 0.602976969202689 9.18370188387232 0.155921712443011 0.0811343391653917
AT1G31814_at 2.8303078900721 2.99940235870206 2.57408420715226 3.14668203540304 3.2487491119364 3.12730133193937 3.10141277915277 2.88895383906044 3.02179212440438 2.77053751268957 3.15680796454848 3.44685053796143 2.88078203841398 3.09929937484043 3.23066754343161 3.53229933845848 3.65237288625397 2.92365616924284 3.09416059096676 0.171485028710246 0.171948873557762 0.194961100747719 0.177323776296653 0.174213399571454 0.177875642873849 0.179426926336246 0.172236630717764 0.180303996480443 0.176107591455229 0.174044018197503 0.174296832774652 0.174311509722142 0.180082455920826 0.175554146494408 0.173050018612526 0.192177275455603 0.184551819604300 0.174904238165608 1 1 - 11412996 11413458 11413170.727 11412589 11414483 - gene protein_coding_gene FALSE TRUE AT1G31814.1 FRL2 (FRIGIDA LIKE 2) family member of FRI-related genes that is required for the winter-annual habit. Genbank accession BK004885 similar to FRL1 (FRIGIDA LIKE 1) [Arabidopsis thaliana] (TAIR:AT5G16320.1); similar to ABI3-interacting protein 2 [Medicago truncatula] (GB:ABE81461.1); contains InterPro domain Frigida-like; (InterPro:IPR012474) 0.173681763575628 1.64483324347561 0.128554099804689 1 0.602967586363502 6.09086438967604 0.173681763575628 0.111663791929684
AT3G25750_at 0.927486002959901 0.734045976654988 0.913546246816824 0.786630873890494 0.769040020760689 0.618610545400837 0.80600305158738 0.662307268169283 0.856584689026759 0.776780894398812 0.459267655952469 0.559233404273775 0.338230410106949 0.436536275943503 0.59834990497757 0.603850613870316 0.698965519989252 0.365257336832857 0.719664065837239 0.186784199926376 0.184087690852175 0.184561249134099 0.180711161295794 0.180654914771624 0.181651018143160 0.180397383004468 0.185437079874941 0.184367883322912 0.188403681233182 0.180397383004468 0.184584532094098 0.186503284498685 0.183699924567507 0.184463180791198 0.180839173662407 0.181498002931332 0.181598462072229 0.185338582121039 3 3 + 9402813 9403245 9403017.091 9402192 9403325 + gene protein_coding_gene FALSE TRUE AT3G25750.1 F-box family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26160.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE79308.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.143692739651639 -1.64482873521621 0.128555039735484 1 0.602961677944916 1.42311105161219 -0.143692739651639 0.0538431049305317
AT4G30970_at 1.24178192303236 1.39855430313949 1.38175292317278 1.53656489996273 1.04071120687893 1.46502744815059 1.43835324803873 1.71757966830311 1.70354570286144 1.62953756304235 1.14244812887780 1.23219849133316 1.77366057507833 1.41688258211636 1.57136919122408 1.09971443958957 1.51407970001042 1.93798595567424 1.75466365420280 0.186651668228158 0.190977789392389 0.189225031225939 0.196166312507846 0.186139063167867 0.190582826009389 0.187028117190074 0.187474261498400 0.184514944812527 0.183287938890978 0.187616538787083 0.185204431720052 0.183512554377918 0.18701970279798 0.196081266419913 0.184100221582272 0.192663975818699 0.184049530526413 0.193176247316808 4 0|4 /|- 15069290 15074176 15071464.3 15069272 15074594 - gene protein_coding_gene FALSE TRUE AT4G30970.1 unknown protein -0.163963211567346 -1.64448990456063 0.128625700269453 1 0.602517640720073 2.9810197140966 -0.163963211567346 0.0958160391222347
AT1G31150_at 3.71400758204876 3.86387628185407 3.33974263798655 3.04098702282026 3.52606282841449 3.61606495103595 3.53474533649227 4.16558352479109 3.83034529959564 3.75786604686016 4.1304015923396 4.40846406593501 4.12249686530098 3.55927337952085 3.90363537392082 3.86211097179816 3.05144721484781 3.88521470516565 3.78399103682001 0.191081016384546 0.1827828677648 0.190783611580575 0.184850294620878 0.188501726062706 0.186803949864745 0.196311200746916 0.188840552055582 0.189199498153997 0.182421756288133 0.183922161235592 0.183893954981041 0.182421756288133 0.195130452163467 0.183822329687447 0.184322756289697 0.207937483024734 0.190801585964966 0.192987658158502 1 1 + 11121508 11122328 11121889.455 11120078 11122568 + gene protein_coding_gene FALSE TRUE AT1G31150.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G20750.1); similar to hypothetical protein 23.t00036 [Brassica oleracea] (GB:ABD65624.1) -0.182096213943613 -1.64415891205315 0.128694759473091 1 0.602083925422216 7.42819109511154 -0.182096213943613 0.124523953797899
AT1G21880_at 3.93542488964784 4.30731872969499 3.73576753242858 3.51296461267081 3.66787801270069 3.40923231142564 4.65918721313475 4.86673302243637 4.80838500570185 4.76097041444336 5.48505643368795 6.26459064580835 4.97554787450679 5.14626876812889 6.346731655112 4.99972985790844 4.38196994319862 5.39100701785293 4.94885547472819 0.221650820184012 0.216219603430083 0.22449834271279 0.218115583761013 0.214834148475173 0.224503678672045 0.217763161445475 0.215457837137186 0.235415237199583 0.226767942306677 0.223098817917534 0.227568023713741 0.215238065862633 0.228344445432065 0.234228441201769 0.217994995237062 0.228944323091821 0.21794726328012 0.221458262988196 1 1|0 +|/ 7681744 7682455 7682181.875 7680470 7682630 + gene protein_coding_gene FALSE TRUE AT1G21880.1|AT1G21880.2 peptidoglycan-binding LysM domain-containing protein Identical to LysM domain GPI-anchored protein 1 precursor [Arabidopsis Thaliana] (GB:Q93ZH0;GB:Q9SFE8); similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G77630.1); similar to putative Erwinia induced protein 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD35901.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) -0.163123101760516 -1.64394494439193 0.128739419780863 1 0.601803579698961 9.11844649359244 -0.163123101760516 0.0944566266374613
AT1G61850_at 6.25142532589823 5.77402358281303 5.96746629359518 5.33944990056026 5.7405653061841 6.04545879226971 4.90788318995956 5.4268102750706 5.46707734435526 5.43325216448726 5.70679260364425 6.28663993890395 5.51821578995124 5.99335148275789 5.72494575545774 5.46274405855905 5.81758401534363 6.19612128665932 5.86357881016925 0.223101546687941 0.227505094753359 0.226557253144834 0.225499740026636 0.227638650941029 0.223101546687941 0.240687314170366 0.230175219671139 0.226568295302805 0.230925135719142 0.238087677034338 0.223101546687941 0.226033027771984 0.223733174994081 0.229260125540485 0.226124684857914 0.239981475459425 0.231064348921528 0.223172892338173 1 0|1 /|+ 22865112 22865858 22865550.4 22859982 22865890 + gene protein_coding_gene FALSE TRUE AT1G61850.1 patatin family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G19330.1); similar to phospholipase, patatin family, putative [Medicago truncatula] (GB:ABE77790.1); similar to Os07g0520900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059805.1); similar to putative calcium-independent phospholipase A2 [Oryza sativa (japonica cultivar-group)] (GB:BAD30421.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Patatin; (InterPro:IPR002641); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.216764703228004 1.64304049412773 0.128928352628655 1 0.600618775089036 11.3947697363339 0.216764703228004 0.171713691539215
AT2G27100_at 5.9235609334233 6.05603938640597 6.46673401905479 6.00872751857090 6.10644331720957 6.42140913500702 5.79301745178343 5.93555005622594 5.60982081881741 5.17476840611651 5.08034181495316 5.34230181704102 5.57104158468639 5.31382765751491 5.10950075053108 5.15938527027958 5.64468384480336 5.36300190189878 5.1513029826758 0.224530291476706 0.229313029301332 0.228326981433378 0.230487332330039 0.2294778207834 0.238585358000683 0.227046125056174 0.224530291476706 0.230337620493817 0.230976037838792 0.227940601974597 0.225959668468737 0.226558398285004 0.233250411293435 0.229098559408404 0.226754790132004 0.237060482339265 0.227145249290978 0.227366733099611 2 2|0 +|/ 11582441 11583371 11582954.444 11579628 11583736 + gene protein_coding_gene FALSE TRUE AT2G27100.1 SE (SERRATE); transcription factor Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia. similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA binding [Arabidopsis thaliana] (TAIR:AT3G53460.1); similar to putative C2H2 zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54671.1); similar to Os08g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062242.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.167416525755600 1.64287930679454 0.128962049246346 1 0.600407662997883 11.4064225519185 0.167416525755600 0.101917224174663
AT2G38110_at 0.935314837923524 1.15299538503583 1.69841792750345 1.46148880647467 0.920465309366076 1.15240407628766 0.897571359582933 0.925667374175573 0.572718082683462 0.867505860665998 0.83966648087819 0.547668961035941 0.659141550255756 0.62660908631222 0.590132684667296 0.781277066956263 1.23086099916035 0.787662561685165 0.926219434692405 0.195583702176938 0.195583702176938 0.19994674214579 0.201491587927178 0.195583702176938 0.199555620277420 0.195952078841926 0.202793871022778 0.197548812974687 0.203940411043574 0.203991551798114 0.200849607948727 0.202459754390862 0.198897807063381 0.207601172025066 0.203684885199235 0.2057517896382 0.196011261282697 0.196478256627777 2 2 - 15959924 15960423 15960218.818 15959685 15962572 - gene protein_coding_gene FALSE TRUE AT2G38110.1 ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15) (AtGPAT6) (GPAT6) [Arabidopsis Thaliana] (GB:O80437); similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G00400.1); similar to ATGPAT4/GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT1G01610.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE91390.1); similar to Os01g0855000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044839.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) 0.149684877625052 1.64234276636433 0.129074270631146 1 0.59970502386493 1.91638657615181 0.149684877625052 0.0688107662536341
AT4G31250_at 2.90466202319704 2.73532008825588 2.43075014883633 2.35488164589865 2.37635737399465 2.61135257778471 2.61823761606396 2.75186673742088 3.20552692234184 2.98784478153035 3.12720349614053 3.09219627304437 3.12682958661808 3.26512124489731 3.07709319311941 2.81044990050977 2.8562208625159 3.26062855926005 2.97691430024951 0.203362971740873 0.195282843401487 0.200874161178727 0.197891286198971 0.199049422967647 0.201999303516976 0.197058359243199 0.195176835867337 0.203826877600992 0.202463534349884 0.196582330462003 0.194814615914201 0.196595815964366 0.210349360761415 0.199249349344061 0.195949237369593 0.207041107146239 0.202287251400212 0.204050120679963 4 4 - 15179233 15179756 15179548.091 15178935 15181757 - gene protein_coding_gene FALSE TRUE AT4G31250.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G20190.1); similar to receptor-like protein kinase [Lycopersicon esculentum] (GB:AAC12254.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.144490145733288 -1.64132845513896 0.129286657835131 1 0.598377064651521 5.66479347187505 -0.144490145733288 0.0567429877800075
AT3G20100_at 7.15671069823275 7.16806148366022 8.49558593889903 8.39241853846837 7.58030758933183 7.67459823504836 7.95146825241334 8.19830966028268 7.04458210278715 7.51474393058076 7.02567734014245 5.83497955051142 7.68392736177377 7.61316019728707 5.6910460807349 7.83567561734025 8.06536938840143 7.5541845366153 7.33091431578664 0.171499573859667 0.166748681575064 0.163772181705315 0.169499476089883 0.161883759385638 0.174299104334380 0.163606850254030 0.165871057081022 0.177015744489603 0.170208960534455 0.169986941518933 0.196351723072348 0.164308119687221 0.171482346821376 0.170399409109829 0.162749371556148 0.162408765328658 0.164750779302517 0.172195296282202 3 3 + 7020056 7020484 7020340.364 7019001 7020907 + gene protein_coding_gene FALSE TRUE AT3G20100.1 CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A30 (cytochrome P450, family 705, subfamily A, polypeptide 30), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20940.1); similar to CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20130.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.141672888919478 1.64100782753684 0.129353858634401 1 0.597957388637074 15.0570571956182 0.141672888919478 0.0491285577731232
AT1G23310_at 13.0191935349663 13.1676648497276 13.2359548136180 13.2941314459529 13.3486698109756 13.3395041526180 13.6276931275466 13.5807463050215 13.8653542218861 13.8025051401523 13.6594001376540 13.6129207951571 13.7034828809879 13.6197777203807 13.2876854416301 13.7488090829550 13.5939006006963 13.7641507346798 13.8867325462443 0.0790485994993439 0.0772511744503328 0.0812719838770552 0.081067444625297 0.0776263314768372 0.0821611250968701 0.0824067402144423 0.0784230348614993 0.0882501320852111 0.0811530117168362 0.08681720788995 0.08037780360171 0.0805800635083932 0.0847796801873911 0.081914796650367 0.0786412319673332 0.0852553200474605 0.0772511744503328 0.0781069472757362 1 1|0 -|/ 8268803 8269701 8269251.4 8268393 8271922 - gene protein_coding_gene FALSE TRUE AT1G23310.1|AT1G23310.2 GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway. similar to AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2), alanine transaminase [Arabidopsis thaliana] (TAIR:AT1G70580.4); similar to AlaT1 [Vitis vinifera] (GB:AAZ43369.1); similar to AlaT1 [Vitis labrusca] (GB:AAZ43368.1); similar to alanine aminotransferase [Oryza sativa (indica cultivar-group)] (GB:AAO84040.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.136012055175507 -1.64081742932827 0.129393779116521 1 0.597708194573476 27.0643430352343 -0.136012055175507 0.0288104912031890
AT3G47670_at 6.16821654523959 6.65052565028807 6.02691146064666 6.31563640521383 6.32010868251148 6.26688769675124 6.18043514953379 6.43948467424545 5.13722208407196 5.01424537089248 5.5322897540873 5.07311209428108 5.41126251559497 5.69369251546145 5.64649157137802 5.22907788806412 5.26410417401292 5.68943997821058 4.77027942810492 0.235146894517356 0.233526754623972 0.238103045108302 0.233526754623972 0.239743960020859 0.244390268582783 0.237961097441221 0.236718916432602 0.257772028161655 0.235832291485709 0.234103158468222 0.233526754623972 0.238500473921222 0.243692655653928 0.233526754623972 0.236831381312150 0.246560885283119 0.246955158652313 0.239324838444667 3 3 - 17586142 17586469 17586342.455 17585770 17586865 - gene protein_coding_gene FALSE TRUE AT3G47670.1 pectinesterase inhibitor similar to ATPME1 (Arabidopsis thaliana pectin methylesterase 1), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G53840.1); similar to Pectinesterase-3 precursor (Pectin methylesterase 3) (PE 3) (GB:Q43111); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.170619370075297 1.64066400039170 0.129425956255513 1 0.597507398017189 11.5042005025918 0.170619370075297 0.107506272879918
AT2G27680_at 10.2895396662349 10.2694526573969 10.0586518920998 9.96600510409151 10.2495919814852 10.1180283113828 10.6410946037256 10.7706051927134 10.6599962851597 10.8530586069006 10.7299896124640 10.7915301843176 10.6088350669378 10.7978213879489 11.1656486584610 10.9938871482734 10.5939957044361 10.9558602971042 10.6181661062259 0.0901095557324056 0.086131252391467 0.0915479259920175 0.0860751239418667 0.085663681068709 0.083573674315114 0.0823806846115771 0.0877314023906456 0.0909584475125126 0.0878828723321265 0.0833869515539205 0.0851125425421957 0.0888214941518481 0.087117666728406 0.0858385753327061 0.083722511655797 0.085678371395508 0.0850293896518502 0.085093189037252 2 2|0 -|/ 11811195 11811976 11811650.4 11810888 11813090 - gene protein_coding_gene FALSE TRUE AT2G27680.1 aldo/keto reductase family protein similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G06690.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46252.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.137657349844369 -1.64061050833974 0.129437176283484 1 0.597437394044944 21.0654226796021 -0.137657349844369 0.0359141203963293
AT3G17630_at 2.70782992139182 2.16253794542233 2.56152330424152 2.21159555202827 2.32167999270605 2.24802091825232 2.38378803255936 2.46841010904068 2.63879680738156 2.95628470946607 2.43168120687905 2.35552267633853 2.68636256963991 2.25178549356626 2.52088326624961 2.47222895352387 2.35656270930931 2.78248785005912 2.6142733613614 0.191068920735781 0.189995795474432 0.196037943790658 0.191234512609204 0.194683299533033 0.188681916542095 0.196714274211154 0.193613689089722 0.200717905122761 0.194407379742247 0.193617212508694 0.191762583692099 0.199991267854578 0.191067127095037 0.189413387741987 0.193634515919679 0.192789227840432 0.190222324190749 0.194146714514931 3 3 + 6031215 6031732 6031511.818 6029207 6031779 + gene protein_coding_gene FALSE TRUE AT3G17630.1 ATCHX19 (CATION/H+ EXCHANGER 19); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX18 (cation/hydrogen exchanger 18), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G41610.1); similar to ATCHX16 (CATION/H+ EXCHANGER 16), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G64170.1); similar to ATCHX17 (CATION/H+ EXCHANGER 17), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT4G23700.1); similar to cation/hydrogen exchanger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99860.2); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79743.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79742.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.174599422835237 -1.64059149757104 0.129441164024727 1 0.597412515346746 4.99249370533798 -0.174599422835237 0.113793057874969
AT3G28480_at 8.57995443539944 8.6628080037996 8.68939098928483 8.72940715139518 7.78236081765534 7.69793232783902 7.33897230701028 7.14430859603695 6.40422157366626 6.42727657546639 5.94494162175134 6.85281137587054 5.97873839889768 6.25829698437136 5.95461226489546 6.04244218197631 6.68934626314735 6.5042759467433 6.05047396842389 0.240300758162416 0.236151235097990 0.236545437331351 0.240211422065143 0.234133667951787 0.240133714874941 0.237811272157339 0.238513930098118 0.242928173462060 0.234133667951787 0.234133667951787 0.234133667951787 0.234133667951787 0.237754473769144 0.236836724174530 0.234133667951787 0.234133667951787 0.234133667951787 0.235207893012687 3 3|0 -|/ 10677503 10678434 10678002.6 10677270 10679625 - gene protein_coding_gene FALSE TRUE AT3G28480.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G28490.1); similar to Metridin-like ShK toxin; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE78638.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain Metridin-like ShK toxin; (InterPro:IPR003582); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.138727204918258 1.64005441616811 0.129553868412554 1 0.59670972423773 14.364228746332 0.138727204918258 0.0400232217368099
AT1G28160_at 1.04695783906668 0.5745671539978 0.820352039779327 0.576097685138193 0.887896906845711 0.560082187335221 0.480939022283281 0.66224567070948 1.71674347760475 1.19004662964283 1.34124658645163 1.2047632963712 1.08734092772054 0.845177526707822 1.43507472088065 1.13318256797948 0.811932020013775 1.30129084383942 1.63027672651741 0.229634087459977 0.220303094152047 0.223810475578879 0.220303094152047 0.220868310917613 0.222491721069561 0.220374915575906 0.222523973906094 0.228599300972746 0.222966669575311 0.226893302524524 0.220303094152047 0.234332058015659 0.221890340830560 0.225234978116883 0.220303094152047 0.231904497164439 0.229013458521154 0.22781173941558 1 1 + 9839577 9840001 9839744.727 9839374 9840111 + gene protein_coding_gene FALSE TRUE AT1G28160.1 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. similar to LEP (LEAFY PETIOLE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G13910.1); similar to Os04g0399800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052680.1); similar to OSIGBa0113L04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66464.1); similar to branched silkless 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26338.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.173712383374564 -1.63962948109264 0.129643100948782 1 0.596153773479493 2.02982064939474 -0.173712383374564 0.112571724962207
AT3G54380_at 6.52918751230208 6.85956544537348 6.8286072328835 7.04693233755531 7.75745879557315 6.43848685509251 6.29251608957844 6.65420849324158 5.81210923034419 6.12196825794164 6.30237092428134 6.16548181793032 6.25995566006435 6.5145759786353 5.9305208715724 6.3617513471066 5.71346699980733 6.28892188123653 6.27268584189549 0.144545348463012 0.144557096482010 0.146261724275167 0.146161734158904 0.150600238540034 0.147686229999574 0.142988564333294 0.144216691403790 0.160917953797084 0.142277209665828 0.144562159590502 0.142570724444721 0.140737880421355 0.144114261157748 0.144116448111678 0.141140411614629 0.152145390520193 0.149956736304278 0.142727951676258 3 3 - 20145003 20147705 20146181.864 20144871 20147781 - gene protein_coding_gene FALSE TRUE AT3G54380.1|AT3G54380.2 SAC3/GANP family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06290.1); similar to Os03g0352200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050121.1); similar to SAC3/GANP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95944.1); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) 0.27860574758553 1.63927849692130 0.129716845523115 1 0.595694635889933 12.9313962427699 0.27860574758553 0.246402362727125
AT1G71310_at 5.02732040804255 5.518263482826 4.79222519036485 4.56143518631931 5.49374757717349 5.21047349751763 5.26613138864864 5.0293609485619 4.44497982031942 4.04978940675996 3.60340124997584 4.02622074764857 4.19670612385193 3.85506902247472 4.20052394854632 4.10816065347177 3.97125144060050 3.74970918157473 3.85519927536621 0.246714381578959 0.236543928574040 0.243775965619383 0.235896232121503 0.236964921467499 0.246088909252025 0.241113930735318 0.243012887363433 0.251402970163618 0.236367268624680 0.236907537586471 0.234448630131126 0.239498920800407 0.241619448908599 0.233622646394684 0.236036063465037 0.236391474084859 0.241083117302274 0.24292603900192 1 1|0 -|/ 26882389 26883436 26883056.444 26881407 26883686 - gene protein_coding_gene FALSE TRUE AT1G71310.1|AT1G71310.2|AT1G71310.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47870.1); similar to Os01g0876900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044972.1); similar to SnRK1-interacting protein 1 [Hordeum vulgare subsp. vulgare] (GB:CAB97356.1) -0.174287282819883 -1.63908167327419 0.129758216003984 1 0.595437186821411 9.15263794168175 -0.174287282819883 0.113557828773773
AT1G53165_at 4.50101281709551 4.88822278417088 4.72240467152664 4.7952610247702 5.00706687067684 4.36321958576083 4.45749938467414 4.32791339760918 4.83075468271308 4.20723224940799 5.0276130538531 4.77051670752636 5.48174088867592 4.8250661272455 4.54294566739637 5.02519302873337 4.66613355697536 4.22714198698868 4.83740666316172 0.202034623977558 0.199687421177868 0.210271838751021 0.202735631164994 0.201410120413735 0.207778223891954 0.198774956938318 0.201496692322973 0.202731388287715 0.198798814502579 0.203187936708960 0.199366900006488 0.20191627619122 0.202617545664289 0.200726790096501 0.200107825609528 0.204845249568537 0.201800398052978 0.205167592311739 1 1 + 19822121 19822864 19822443.273 19817472 19823232 + gene protein_coding_gene FALSE TRUE AT1G53165.1|AT1G53165.2 kinase| similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G15220.1); similar to BnMAP4K alpha1 [Brassica napus] (GB:CAA08757.1); similar to putative MAP4 kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83751.1); similar to BnMAP4K alpha2 [Brassica napus] (GB:CAA08758.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.186994310521468 1.63855363197471 0.129869263075290 1 0.594746585654761 9.35578760483649 0.186994310521468 0.132539025337817
AT1G12880_at 5.73283690896931 6.03708496707469 6.3213363846125 6.04785034327616 6.61395899129264 5.84055217058139 7.09834604968707 6.81820559152608 6.93671188472476 7.59023055543367 7.56945019433936 6.92618643581936 6.72619724939715 6.82487452229528 6.74851764567869 7.31434407668668 6.89757097288182 7.35884960740055 7.20116255341372 0.167580802007099 0.161001602984294 0.172146756755304 0.176632352696932 0.165336972008968 0.172489712803358 0.169242336862395 0.163772043876465 0.167343458678984 0.164241065592382 0.167306824513179 0.160617939818884 0.163419040591653 0.168152802248120 0.171779230705871 0.163796996256983 0.173257151609167 0.164272676391564 0.161489462699145 1 1|0 +|/ 4390058 4391015 4390679.75 4389749 4391149 + gene protein_coding_gene FALSE TRUE AT1G12880.1 ATNUDT12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase Identical to Nudix hydrolase 12, mitochondrial precursor (EC 3.6.1.-) (AtNUDT12) (NUDT12) [Arabidopsis Thaliana] (GB:Q93ZY7;GB:Q9LPW1); similar to ATNUDT13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13), hydrolase [Arabidopsis thaliana] (TAIR:AT3G26690.2); similar to Os11g0531700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068011.1); similar to Os02g0520100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046973.1); similar to Nudix hydrolase 13, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22503.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.206323366667652 -1.63842768347688 0.129895762473097 1 0.594581882052805 13.4579966771707 -0.206323366667652 0.158984245209305
AT4G19985_at 6.47249070386366 6.35351229839562 6.02184206667643 6.02549164816311 6.33313202444066 6.02852725858741 7.26841266713947 7.24741172125853 6.96907146975207 7.13879250141254 7.69305618445043 7.74228121677276 7.04051970536157 7.73400929752669 7.77853970489875 7.55217661854175 6.34713078591973 7.35602627235393 6.77421066502816 0.226699469745246 0.220781305082903 0.223378368519160 0.218376619610733 0.22445121234722 0.235785656580892 0.227351886009584 0.220847950309351 0.251527374787038 0.218376619610733 0.223358970354746 0.226495158295833 0.218376619610733 0.224498858563202 0.224664060726151 0.227236014826209 0.246178155690763 0.234410701305493 0.223499417623193 4 4|0 -|/ 10830868 10831533 10831250.7 10830247 10832104 - gene protein_coding_gene FALSE TRUE AT4G19985.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to ATNSI (NUCLEAR SHUTTLE INTERACTING) [Arabidopsis thaliana] (TAIR:AT1G32070.3); similar to hypothetical protein 174 [Porphyra yezoensis] (GB:YP_536873.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.144216335183404 -1.63835535460631 0.129910982537147 1 0.594487300414301 13.6519320578785 -0.144216335183404 0.0567118599004452
AT2G48070_at 7.82895922363557 7.7418828319212 7.15289721184113 7.40664519165526 7.41577971804474 7.57189451158509 7.82232751906018 8.27820917111914 8.5046508014922 8.14962311787498 8.2931598058861 8.62020440741792 8.28758033740297 8.51999959135681 8.85669021119849 8.66062275958965 8.17979214773806 8.33298559030118 8.13773019102878 0.157752728973884 0.156509444390383 0.154072986680238 0.156082918415108 0.155501250307148 0.160916101213470 0.160658070981481 0.160220144753397 0.160131508289055 0.153529301820357 0.151530500017446 0.150898570141996 0.155229763433678 0.157533405838226 0.159192660924353 0.154374841042183 0.170193774375549 0.150705439801505 0.155230432639878 2 2 + 19669974 19670700 19670336 19669914 19671535 + gene protein_coding_gene FALSE TRUE AT2G48070.1|AT2G48070.2 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55449.1); similar to Os05g0404400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055503.1) -0.163081270961531 -1.63780941722009 0.130025914356231 1 0.593773476098288 16.0187647856045 -0.163081270961531 0.0954424703198328
AT1G24310_at 2.7511798211488 2.62831450199789 2.51060584958857 2.4076745493639 2.46807980556704 2.51547987473321 2.75314247415642 3.11854608932606 2.49139779108363 2.48401305161013 2.20588654428534 2.70165924935873 2.68594621923659 2.92734464160809 2.75368553230096 2.63061814589074 2.07457016580581 2.44418147781349 2.56914628811131 0.209382225818294 0.209382225818294 0.222088103199921 0.214143043794694 0.209382225818294 0.212018692859182 0.217951321573281 0.214664359715968 0.212447789882940 0.213985180224929 0.217971798382010 0.209382225818294 0.211943515941725 0.220171094138659 0.213777714595180 0.209382225818294 0.218154051920994 0.210522427538673 0.211457546514635 1 1|0 +|/ 8625032 8625885 8625506.2 8624050 8626394 + gene protein_coding_gene FALSE TRUE AT1G24310.1 similar to transporter [Arabidopsis thaliana] (TAIR:AT1G10390.2); similar to Os07g0295400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059407.1); similar to hypothetical protein DDBDRAFT_0190968 [Dictyostelium discoideum AX4] (GB:XP_646706.1); contains InterPro domain Apolipophorin III-like; (InterPro:IPR011000) -0.149600790870833 -1.63778614701625 0.130030815246271 1 0.593743052839689 5.17804730772148 -0.149600790870833 0.0695363933331392
AT2G47310_at 2.96729724860293 2.92531077008974 3.16373934734675 3.13936819610028 3.37217802764860 3.28682136154668 3.36694440881698 3.01462456852512 2.77636465929864 2.66599302892546 2.99005717503806 2.54551093260755 3.34156723717304 2.79119051373057 2.83383836551791 2.77925100507049 2.66441624472063 2.86635907860329 2.74716270925466 0.245964717834318 0.254907752968473 0.255831442657666 0.280508446297724 0.255885800492998 0.276746140915920 0.25813547311442 0.271254943355174 0.277142884153036 0.254886938150294 0.245964717834318 0.249522313875183 0.246282647624373 0.250091625871825 0.245964717834318 0.254684886113648 0.247146616400518 0.269748226183004 0.252793326593117 2 2|0 +|/ 19431450 19432794 19431875.333 19430754 19434347 + gene protein_coding_gene FALSE TRUE AT2G47310.1 flowering time control protein-related / FCA gamma-related similar to FCA (FCA), RNA binding [Arabidopsis thaliana] (TAIR:AT4G16280.3); similar to RNA-binding re (GB:ABE87770.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.146833085358326 1.63767665007306 0.130053878369891 1 0.593599900808977 5.94521746685994 0.146833085358326 0.0632944558973027
AT2G16820_at 1.83443756689865 1.80454582711504 2.32751203834323 2.25134065234322 1.6332088194076 2.54265332209228 1.92503629072189 1.96882045181521 2.34802981437359 2.08370534634121 2.10472677154047 2.09260212608540 2.18872815974533 2.26067417489887 2.22864408050776 1.84091866864526 2.75575340238341 1.94012598199612 1.78124716009329 0.181631364110627 0.1817677701606 0.181108813131052 0.185490697520745 0.185146668925058 0.184022165307679 0.184207168004740 0.183642177631096 0.186313659737536 0.190087598728747 0.186422617304731 0.184134010033435 0.186829159957378 0.181380940752259 0.18476957508897 0.184862708148563 0.188019898003711 0.185687871808630 0.187833744606396 2 0|2 /|- 7297211 7297482 7297258.25 7297186 7298034 - gene protein_coding_gene FALSE TRUE AT2G16820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27590.1) 0.205498118849093 1.63659425033845 0.130282057070520 1 0.592185106955885 4.15970225992282 0.205498118849093 0.158200924232450
AT1G31160_at 6.03922634836975 5.93442443174955 5.52598320017478 5.64822450420446 5.80432946624397 5.46951251365364 6.53373191929805 6.8013158771781 6.4187353632372 5.97138321250573 6.51313898454044 6.75582319781556 6.8110126832118 6.60491342248403 6.65993379645482 6.73410985906288 6.24467913766534 6.33815906755428 6.13750940787716 0.187016502634605 0.18436298176233 0.196308259748500 0.191995070718637 0.190841075633935 0.197978792714590 0.189726073747642 0.192618213338947 0.192844320787141 0.188669915737322 0.186114195138855 0.189001779882396 0.187286854072298 0.189483012880385 0.185261687197934 0.183892274695105 0.197251632633112 0.185167167033447 0.18468749898408 1 1|0 -|/ 11122862 11123930 11123410.5 11122640 11124136 - gene protein_coding_gene FALSE TRUE AT1G31160.1 zinc-binding protein, putative / protein kinase C inhibitor, putative similar to zinc-binding protein, putative / protein kinase C inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G56490.1); similar to Histidine triad (HIT) protein [Medicago truncatula] (GB:ABC75370.1); contains InterPro domain Histidine triad (HIT) protein; (InterPro:IPR001310) -0.154158474510517 -1.63647447744197 0.130307327948211 1 0.592028585754367 12.3488921641784 -0.154158474510517 0.0792337056155555
AT3G07040_at 5.29332696710262 5.6657341998301 5.30925800530065 5.29759173847438 5.49142027828987 5.21928230536648 4.810796430726 5.13690954455563 4.48304979593868 4.39844644063085 4.35542016582871 4.95477233078874 4.73093962776353 4.51859323278372 4.42088182599652 4.70314397775161 5.07327138439893 4.64008943310490 4.46475494812465 0.236365953617150 0.223705571986513 0.226638478024521 0.223705571986513 0.236375969003834 0.233597065575253 0.223705571986513 0.229007628774277 0.233384967470639 0.226477861772218 0.223705571986513 0.223705571986513 0.223705571986513 0.230513350853497 0.233870350661746 0.223705571986513 0.234289142945717 0.228191654776807 0.234235752943372 3 3 - 2226254 2226756 2226545 2225958 2229030 - gene protein_coding_gene FALSE TRUE AT3G07040.1 RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1) Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1. Identical to Disease resistance protein RPM1 (Resistance to Pseudomonas syringae protein 3) (RPM1) [Arabidopsis Thaliana] (GB:Q39214); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G35450.1); similar to putative NBS-LRR type disease resistance protein [Prunus persica] (GB:AAT09451.1); similar to disease resistance gene homolog 9N [Brassica napus] (GB:AAC99466.1); similar to disease resistance gene homolog 1A [Brassica napus] (GB:AAC99464.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.164292449354140 1.63634648214755 0.130334338467067 1 0.591861326604098 9.83973462980579 0.164292449354140 0.0977769705573998
AT1G32190_at 3.31484064781129 3.05796137785752 2.33564049803691 2.50231222585826 2.36889831631009 2.80207774636416 2.09561352227925 2.66391649481345 2.8243768817526 2.19095604446961 2.59572351860678 2.88556603053307 2.17842147746818 2.58300721034008 2.48201174411259 2.50927600314943 2.52572559061934 2.52408294352455 2.87710460226838 0.184774661968549 0.182323776276496 0.185803151028665 0.186687420244252 0.189222896270092 0.187259987229980 0.194527808707246 0.185029955030707 0.191917225975794 0.197739485889244 0.180427853002698 0.180427853002698 0.182554425298047 0.187218503937027 0.184395275178488 0.180427853002698 0.183747959785656 0.185154937808813 0.182570731588535 1 1 - 11593137 11593572 11593371.364 11592935 11595962 - gene protein_coding_gene FALSE TRUE AT1G32190.1|AT1G32190.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30380.1); similar to Os01g0689800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043924.1); similar to Os08g0161500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061050.1); similar to C (GB:BAD82560.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24320.1); similar to Os08g0161500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061050.1); similar to C (GB:BAD82560.1); similar to Os02g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048390.1); contains domain no description (G3D.3.40.50.1820); contains domain UNCHARACTERIZED (PTHR12277:SF8); contains domain UNCHARACTERIZED (PTHR12277); contains domain alpha/beta-Hydrolases (SSF53474) -0.188093254375313 -1.63591646361454 0.130425120486890 1 0.59129945013942 5.22580226581192 -0.188093254375313 0.134535851219237
AT3G44400_at 2.64681209313734 3.29731841268448 3.40971207066251 3.16425335369274 2.49919818070255 2.24629226659673 1.96133230757764 1.85279448025781 2.04254958864835 1.66096500749751 2.08304665293932 1.62355823826961 2.10148107424572 1.91331462962374 1.63948683378688 2.10440800952830 1.55694510000082 1.97473387923275 1.98444626333498 0.207468277192616 0.201845920915435 0.213999506074945 0.208298815288807 0.202991267993674 0.201845920915435 0.207272203924601 0.211034431440292 0.202802532812160 0.218403564518991 0.206344533910576 0.203710713034574 0.206978033488074 0.204305481683673 0.213254798505777 0.202855048784427 0.210888734411623 0.20475005495933 0.207865895389701 3 3 - 16057359 16057888 16057590.364 16057318 16060655 - gene protein_coding_gene FALSE TRUE AT3G44400.1 disease resistance protein (TIR-NBS-LRR class), putative similar to RPP1 (RECOGNITION OF PERONOSPORA PARASITICA 1) [Arabidopsis thaliana] (TAIR:AT3G44480.1); similar to disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G44630.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT3G44670.2); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.184467246771213 1.63547585539025 0.130518196185641 1 0.590723824178365 4.52001852334581 0.184467246771213 0.129403968383719
AT4G08310_at 6.89877646267219 7.70428751009192 6.94999749135492 6.85358054417882 7.74835018486855 7.6426478332169 7.3839655769086 7.05293114292094 7.36960762407813 7.83813341755986 7.50857875996519 7.84003255963491 7.42495136002629 7.36925642896113 6.84294893513618 7.58004937175856 7.30669648379845 6.35062367385507 7.94889154757733 0.186618160186080 0.187738244123386 0.191400670903903 0.193362950856474 0.193352924383488 0.186618160186080 0.191117686689091 0.194946798697744 0.209043607967560 0.189634639222445 0.189572220554277 0.190960985830177 0.197819986873129 0.194384364815989 0.18929683328483 0.190762488429673 0.201429114205522 0.207510785082885 0.196537734001185 4 4|0 -|/ 5249318 5249973 5249657.4 5248861 5252147 - gene protein_coding_gene FALSE TRUE AT4G08310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44780.2); similar to hypothetical protein DDBDRAFT_0192009 [Dictyostelium discoideum AX4] (GB:XP_629009.1); similar to Os11g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068054.1) -0.201165746420042 -1.63483956136651 0.130652713054508 1 0.589892703562183 14.7777019564668 -0.201165746420042 0.152730036345063
AT1G23240_at 1.75617946188555 1.32858878157171 1.30131623865559 1.55766179212259 1.05403076316008 1.82122053239977 1.40484815465202 1.60961735924322 1.88082399105624 1.36126091332866 1.01378932800314 0.834545655874281 1.66421069426065 1.11891811693214 0.654063262790247 1.51019901886087 1.09806593444240 1.42893042270824 1.23029820074839 0.215875578079167 0.212375327379231 0.214975716603398 0.207646236228408 0.206529239090824 0.217526098686796 0.205423351323886 0.211769136938015 0.20978278399799 0.207873269158864 0.208042871451101 0.218222235750179 0.205423351323886 0.210431958914657 0.209869973526363 0.213156847474135 0.208786399838429 0.207472778072063 0.209619565115322 1 1|0 -|/ 8252959 8254077 8253600.778 8252704 8254614 - gene protein_coding_gene FALSE TRUE AT1G23240.1|AT1G23240.2 caleosin-related family protein similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon dactylon] (GB:AAS48644.1); contains InterPro domain Caleosin related; (InterPro:IPR007736); contains InterPro domain EF-Hand type; (InterPro:IPR011992)|similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G70670.1); similar to calcium binding protein [Fagus sylvatica] (GB:CAE51349.1); contains InterPro domain Caleosin related; (InterPro:IPR007736) -0.208352585948693 -1.63476676167312 0.130668111224819 1 0.58979762512672 2.80725022176719 -0.208352585948693 0.162252697406779
AT2G32790_at 2.00533418713633 2.36195728831874 2.25423670305347 2.11200079758964 1.77976689822608 1.93623776592235 2.01707310421181 2.31787124206791 1.89637418480657 2.51884779653957 2.59044172993247 2.36325593227292 2.37806236028211 2.63633653728941 2.26611939058336 2.03231624231959 1.95175514598894 2.1787699817457 2.97229185460249 0.196914074615511 0.194914575495495 0.191501677614390 0.197622104153250 0.195509527940758 0.198758415507881 0.195913096033143 0.192901059726800 0.196222177927518 0.194761605870572 0.192530018772132 0.194950097429271 0.202943386495951 0.201008703237488 0.199818809533774 0.198172181649674 0.200750277079684 0.194071862401948 0.197217211294183 2 2 - 13912789 13913277 13913050 13912565 13913403 - gene protein_coding_gene FALSE TRUE AT2G32790.1 ubiquitin-conjugating enzyme, putative similar to UBC11 (ubiquitin-conjugating enzyme 11), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G08690.1); similar to ubiquitin conjugating enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAB93371.1); similar to ubiquitin conjugating enzyme [Zea mays] (GB:AAB88617.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -0.158935430583437 -1.63455352665184 0.130713222708515 1 0.58951914813023 4.47912813683314 -0.158935430583437 0.0886428053439032
AT1G14510_at 8.98892486555334 8.73660003121499 8.53961634488128 8.79219248788373 9.08783254141443 8.5046253746267 8.1223611156348 8.02082085268647 8.31166574237949 7.92813420980644 8.21034814266889 8.08017464554297 8.05016773233846 8.2711929081801 8.34537236814838 8.24919901802698 8.16921429705435 7.77822754001688 7.91808181976738 0.184600542469106 0.187999949221681 0.186235944849289 0.186608196171229 0.185025424686967 0.200923128468006 0.181640488379793 0.183674282049209 0.190950989687477 0.182023202608237 0.193760398592536 0.179465279474102 0.186336713850171 0.179465279474102 0.190337548398210 0.179465279474102 0.186004019210782 0.205905345712016 0.189642859258320 1 1|0 -|/ 4962186 4963216 4962551.2 4961881 4964423 - gene protein_coding_gene FALSE TRUE AT1G14510.1 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT2G02470.1); similar to PHD5 [Glycine max] (GB:ABI97244.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.177749897554246 1.63442435812403 0.130740555993417 1 0.589350468927497 16.6975538711444 0.177749897554246 0.119633673448469
AT4G08780_at 0.623361753852036 0.600910950428552 0.66955807350345 0.392328871583506 0.757053188966128 0.298734228679463 0.181124363104166 0.538369803425885 -0.252277197714154 0.624759369151075 0.802446819307828 0.395480388896006 0.42500252584839 0.487402589274772 0.377010703361983 0.229411405157571 0.504450596320322 0.708242030276326 0.196774205861272 0.213532040504730 0.213102853358980 0.221833629509299 0.216692705231040 0.215059715440415 0.211328013897817 0.213525253438998 0.213902143815857 0.233802205001406 0.214969966364151 0.211328013897817 0.214618252362649 0.217628271806548 0.214324234646357 0.213256281017026 0.216544344211313 0.227855357087529 0.221513058398465 0.225715493341721 4 4|0 +|/ 5607548 5608172 5607824.8 5604150 5608199 + gene protein_coding_gene FALSE TRUE AT4G08780.1 peroxidase, putative Identical to Peroxidase 38 precursor (EC 1.11.1.7) (Atperox P38) (PER38) [Arabidopsis Thaliana] (GB:Q9LDA4); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G08770.1); similar to Peroxidase C2 precursor (GB:P17179); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.172452814759906 1.63425104027194 0.130777239642707 1 0.589124147753615 0.84814665822863 0.172452814759906 0.111488127568181
AT1G77930_at 10.2687108443642 10.2427623406078 10.9086187428498 10.7986959033797 10.9919075523917 10.5714308698943 11.0167964001449 10.7452184012999 10.6077015236503 10.7216085952536 10.9492115450383 10.5142578674715 10.5137262936664 10.8804661066754 10.4355491563961 10.9630517046399 10.6776713542685 10.5756272708049 10.5306975042685 0.0814236614344642 0.0808115417654424 0.0843656626345904 0.0825988467641448 0.0829603503358446 0.0892854031184739 0.082921816028989 0.082191404222052 0.0900379046667117 0.082564543605036 0.0821040867709033 0.0808115417654424 0.0857668348128483 0.0825299929557834 0.0818564969055408 0.0819017979232465 0.0871483166571085 0.0855778352912107 0.0863171722090522 1 0|1 /|+ 29306587 29307312 29306987.778 29305894 29308464 + gene protein_coding_gene FALSE TRUE AT1G77930.1|AT1G77930.2 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT3G17830.1); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G80030.2); similar to Heat shock protein DnaJ-like [Thiomicrospira denitrificans ATCC 33889] (GB:YP_393068.1); similar to Os07g0626400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060336.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.158991945918628 1.63424264401681 0.130779016986314 1 0.58911318413974 21.3473664835803 0.158991945918628 0.0888010924360237
AT4G29560_at 1.52642493664201 1.79834991601609 1.73441072255781 1.40284018817535 2.15466050707924 1.85607341451356 1.60838376944409 1.57339771135419 2.12496440222364 1.51843911740758 1.34794177476852 1.69937025166047 2.11450763022894 1.87879256471718 1.93298547584834 1.96703132104927 2.08526018475061 2.06624908567446 1.53729446790838 0.199351080957897 0.197055765107951 0.213961950150599 0.207551673830960 0.205411105913665 0.201734494675047 0.204755167311017 0.207189545395372 0.205030396887129 0.19911143309338 0.202366917045118 0.198434920321399 0.20243846268199 0.205149080819370 0.203188456789055 0.196704072293502 0.198956800590386 0.204273739159584 0.208524400538795 4 4 - 14504429 14504992 14504727.364 14503879 14506020 - gene protein_coding_gene FALSE TRUE AT4G29560.1 similar to Os06g0573800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057921.1); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.159987540812377 1.63410374970517 0.130808421639041 1 0.58893182418819 3.51352595335634 0.159987540812377 0.090628529134391
AT2G01820_at 9.19372642063614 9.40508104350934 8.85301785735754 9.14700568341438 9.1092696133417 9.34138871222291 9.15337665255272 9.53785661107096 9.5807330055918 9.27635806361017 9.23915182335633 9.32560501053992 9.31030503835404 9.23788914636536 9.21334326019848 9.10931330701350 9.06072677777143 9.39255439683888 9.2133560592944 0.0904678262207348 0.090574524949011 0.101847643045695 0.0956512885003668 0.0921006138429061 0.0918713017763913 0.0909006801607989 0.0929484255629866 0.0986690848583726 0.0902393553724326 0.0950680942507407 0.0923307757443831 0.0910947707138503 0.0936046680308908 0.093990500790146 0.0943133321919285 0.102977013746502 0.0974808700263864 0.095180939138364 2 2|0 -|/ 357668 358408 357932.6 357430 360680 - gene protein_coding_gene FALSE TRUE AT2G01820.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G23750.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G24650.1); similar to TMK1 (TRANSMEMBRANE KINASE 1) [Arabidopsis thaliana] (TAIR:AT1G66150.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to LRR receptor-like protein kinase [Nicotiana tabacum] (GB:AAF66615.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE85728.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.165272164901099 -1.63403926353179 0.130822075688581 1 0.588847624960636 18.5140537265400 -0.165272164901099 0.0998337541298068
AT2G26470_at 3.58341779581999 3.72085670935526 4.37945662174626 3.98929977033178 4.17773456215261 4.47914713633446 3.81218596263165 4.08847679967604 3.1252615151667 3.12760934391274 3.34536679198181 2.90450129051279 3.36955353698995 3.06474447110521 2.96138809166028 2.93265682765123 2.80868584524524 3.3220019111732 3.38399470681136 0.199367083793833 0.200183090825559 0.190142910402133 0.19358474730819 0.194936614271830 0.196228934857078 0.193949497561192 0.197470954851723 0.202368729236863 0.195017843151011 0.192828685076841 0.190029668032286 0.197250971892934 0.205860853870576 0.206635699902780 0.188348962113528 0.18989751562805 0.199639491514416 0.188948935291908 2 2 - 11266409 11266875 11266698.364 11266231 11269568 - gene protein_coding_gene FALSE TRUE AT2G26470.1 similar to Os06g0470800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057618.1); similar to hypothetical protein GSU0040 [Geobacter sulfurreducens PCA] (GB:NP_951102.1); contains InterPro domain Protein of unknown function DUF159; (InterPro:IPR003738) 0.165749514798452 1.63393542155317 0.130844065433353 1 0.58871204307105 7.17927235363279 0.165749514798452 0.100654458510705
AT1G63730_at 1.39670230660697 1.71690325156457 1.32423920419916 1.37038861475331 2.14196556722102 1.64417062516335 1.2506112701831 1.27185411632650 1.19640919858824 1.47571390306114 1.57832105533566 1.18430646143393 1.00093426957106 1.48541655198501 1.11921194339293 1.18091649070773 1.61858456928618 1.82035074907626 1.07987768781414 0.190156215042587 0.206814022169756 0.198205370854919 0.195367859617690 0.197871024409294 0.192844118216857 0.190156215042587 0.197109971430051 0.195357735925935 0.194370004852784 0.210731909185047 0.199681599878744 0.207113282184648 0.196292385671780 0.208849970175642 0.192536830032913 0.197994771495425 0.199531938410172 0.205822062261115 1 1 + 23648283 23648761 23648520.818 23645433 23648795 + gene protein_coding_gene FALSE TRUE AT1G63730.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G16870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63740.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G58120.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91519.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.167005799095677 1.63360104584871 0.130914895601264 1 0.58827549690135 2.82669046508713 0.167005799095677 0.102805172929289
AT3G17690_at 2.40137252922581 2.10702625400095 3.32805744850112 2.84030206939608 2.01059224034424 2.44865926898597 1.98838309030860 2.07098140516868 2.12817863908616 2.21682262285366 2.01731743164219 2.02898426149794 1.61536314961043 2.02051592763182 2.35402607689540 1.83359533674126 1.62077683013323 1.83424589501296 1.85854580512173 0.208152085976857 0.199315603657342 0.203381971781496 0.212328365593841 0.206098031416402 0.208681776713225 0.206008764116926 0.199315603657342 0.200985801113433 0.214020562881849 0.200408240877851 0.203241713823053 0.207189094511111 0.202707988481494 0.205590218278014 0.199315603657342 0.20313006475037 0.210120334653282 0.201719630907120 3 3 + 6047813 6048310 6048099.1 6045008 6048494 + gene protein_coding_gene FALSE TRUE AT3G17690.1 ATCNGC19 (cyclic nucleotide gated channel 19); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 19 (Cyclic nucleotide- binding transporter 2) (CNGC19) [Arabidopsis Thaliana] (GB:Q9LDR2); similar to CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G17700.1); similar to Os06g0207700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057101.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); similar to Os02g0773400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048268.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821) 0.181358014211324 1.63346880875359 0.130942916495829 1 0.588102868064878 4.39114785624118 0.181358014211324 0.125183280133901
AT4G25170_at 8.6567321086519 8.41978613921041 7.9567761459938 8.12526952205424 9.06354715042638 8.77494706011559 8.3268263651693 8.04324219704817 8.22101066960584 8.09348375667388 7.9126066323583 7.90197068107702 7.87306963205052 7.693565295234 7.66762969073229 7.77691027099101 7.94234095797033 7.25088307720199 8.24288994182455 0.178008101102619 0.174559940121461 0.194692711484057 0.184445663803995 0.178835347242609 0.180574252192949 0.177918541179440 0.176614090556577 0.184468460637106 0.173145632938676 0.177345315366409 0.177528741211667 0.182719328203867 0.182238127065178 0.183334055176205 0.180096986448 0.187715802872911 0.184130266698326 0.175507587416073 4 4 + 12910676 12911365 12910953.909 12909585 12911590 + gene protein_coding_gene FALSE TRUE AT4G25170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61490.1); similar to putative protein [Oryza sativa] (GB:CAC39077.1); similar to Os02g0657700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047631.1) -0.157467246269299 -1.63294380849545 0.131054215847282 1 0.58741758556476 16.3899742456187 -0.157467246269299 0.0862228086907494
AT3G25120_at 6.74017505636119 6.60511707431103 6.59069498001157 6.42195764493615 6.29985822875557 6.14395584893492 6.85995332491916 6.36516747424436 4.34326135172847 5.0521341868462 5.49505612718399 5.87570597785921 5.5511782852833 4.7666974374551 5.86477763409013 5.16489212296862 5.7514187769141 4.42771627548834 4.87381749311318 0.169883417696537 0.169671268901665 0.170278130092130 0.17469458168551 0.168588850775840 0.173180964527026 0.169818387659088 0.180120750638572 0.178742703610775 0.183405797063980 0.174799127651869 0.168588850775840 0.182588044487497 0.181887536794783 0.17073378393305 0.168821086397652 0.169712160142230 0.194227594483305 0.179175556689015 3 3|0 -|/ 9149809 9151019 9150421.1 9149551 9151130 - gene protein_coding_gene FALSE TRUE AT3G25120.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein similar to Os04g0376100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052579.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 0.163644714480009 1.63293006805523 0.131057129926118 1 0.587399651867276 11.5626522908349 0.163644714480009 0.097254802172214
AT1G73700_at 2.95067642485823 3.19825626982361 3.64560244586108 3.76465898548027 3.83451638516368 3.18859128206119 3.52737416375138 3.64574829318702 2.57039427513317 2.53334945509932 1.93462278915793 2.32808900644228 2.56744475909607 2.80258722240623 2.17169486013132 3.18454530662533 3.82643119959674 2.11942984175746 2.500800028808 0.248331963709958 0.251712480328521 0.252142746937194 0.246533597110186 0.249299247051781 0.254674837209937 0.250351026521044 0.260228509842726 0.254717088397860 0.257514490709346 0.254375982484375 0.257727555918682 0.246533597110186 0.255565298546647 0.258407818281848 0.247604943326617 0.273585471525017 0.257468697248087 0.255423956539460 1 0|1 /|- 27721384 27722092 27721738.286 27721041 27723309 - gene protein_coding_gene FALSE TRUE AT1G73700.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT2G34360.1); similar to MATE efflux protein-related [Arabidopsis thaliana] (TAIR:AT5G52450.1); similar to Os06g0495500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057690.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65963.1); similar to Os06g0494400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057687.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.179918095104001 1.63262379000748 0.131122100400207 1 0.586999927392992 6.04527980268922 0.179918095104001 0.123185496927558
AT4G38870_at 1.02764524347710 1.48052691674220 1.36727615653470 1.28601163376553 0.719977560067067 1.31225288117656 1.23601746763775 1.55946574513338 1.20623606061678 1.51994787040306 0.802686243454265 1.14367037031673 0.675205934086215 0.918589853308847 1.18409761780320 0.680553637883771 1.58365189869488 1.58150969322939 1.17922542602392 0.241140536377169 0.240528284770806 0.248323661339667 0.241334828681051 0.235803726543246 0.238054754268577 0.231023057715206 0.237885286071396 0.238737989289611 0.237786193613120 0.231023057715206 0.236038204981827 0.240603000405246 0.235527962663669 0.240124326393987 0.231023057715206 0.243582273202998 0.248207990707359 0.232306842806297 4 4 - 18132594 18133141 18132810.545 18132577 18133857 - gene protein_coding_gene FALSE TRUE AT4G38870.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G21930.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.192545874139534 -1.63253973522348 0.131139935846043 1 0.586890234716496 2.43517108812266 -0.192545874139534 0.141346000136680
AT2G28990_at 1.28940249585653 1.41950498974442 0.969450703763055 1.36337613418089 0.5444594046854 1.18591059607711 0.632128343360073 0.988595175816948 2.03851804058210 1.35170342881696 1.55403802894195 1.40740592091005 1.38817919383677 1.4025735896444 1.29068108715834 1.38136273330569 1.04234670786665 1.67437820204647 1.76269812229335 0.185110078313824 0.189132322219984 0.193911818534899 0.187298798885917 0.193192404553531 0.204905344681640 0.199853274465297 0.190149451029901 0.191582519962714 0.196509398855081 0.185110078313824 0.192158096031449 0.187478802890279 0.18882970183142 0.190877469609074 0.185799391193380 0.192271805965256 0.189501487045787 0.187562787249403 2 2 + 12465951 12466505 12466284.909 12462132 12466618 + gene protein_coding_gene FALSE TRUE AT2G28990.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G28970.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.195813861225780 -1.63237562882688 0.131174763498520 1 0.586676082863445 2.60423375386618 -0.195813861225780 0.145883350750803
AT2G37250_at 6.6584373087873 6.88329100073101 6.69367199853251 6.76020439816200 6.1152891184297 5.9487557830624 6.38681963007323 7.03181744585439 5.96942115075481 6.02400893014505 6.27965836869439 6.67694544264449 6.20341699266373 5.65268167229338 6.24612103942315 5.95642210605797 5.58667256530621 6.03297053156266 6.23786898579966 0.222014999875291 0.216736458009713 0.21756236445955 0.222655231073073 0.218439085514379 0.214754587575295 0.223173126848175 0.219232750945340 0.225750635933537 0.235767439682174 0.219094028392978 0.214754587575295 0.218550938646427 0.22573366422339 0.219132997171668 0.214807466231458 0.232649911171649 0.219163769258261 0.232084810263879 2 2|0 +|/ 15649329 15650317 15650000 15648985 15650865 + gene protein_coding_gene FALSE TRUE AT2G37250.1 ADK/ATPADK1 (ADENOSINE KINASE); nucleotide kinase encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth Identical to Probable adenylate kinase 1, chloroplast precursor (EC 2.7.4.3) (ATP- AMP transphosphorylase) [Arabidopsis Thaliana] (GB:Q9ZUU1); similar to adenylate kinase family protein [Arabidopsis thaliana] (TAIR:AT2G39270.1); similar to Adenylate kinase, chloroplast precursor (ATP-AMP transphosphorylase) (GB:Q8HSW1); contains InterPro domain Adenylate kinase, subfamily; (InterPro:IPR006259); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850) -0.179174810441959 -1.63177750392408 0.131301770469516 1 0.585895659555405 12.6380162248194 -0.179174810441959 0.122214001676494
AT1G58260_at 2.02604798571843 1.90570788920215 2.86504335212470 2.97533197730417 1.49277769187347 2.58725322980082 2.09390863389100 2.20983140282722 2.5719689342756 3.12707784837069 1.95465805558208 1.87094215586730 1.16066963739756 1.61295378399299 2.30590234959507 2.4841157176196 1.86598541193540 1.78547179708897 2.5961124582623 0.471449227813079 0.471449227813079 0.471449227813079 0.471449227813079 0.471449227813079 0.494160829307804 0.471449227813079 0.471449227813079 0.473595173698315 0.472830937541192 0.471449227813079 0.471449227813079 0.490899352643013 0.471449227813079 0.481829503868867 0.471449227813079 0.471449227813079 0.495191293765617 0.53044987703699 1 1 + 21611527 21611611 21611562.333 21609417 21611660 + gene protein_coding_gene FALSE TRUE AT1G58260.1 CYP79C2 (cytochrome P450, family 79, subfamily C, polypeptide 2); oxygen binding member of CYP79C subfamily of cytochrome p450s. Encodes a putative xylan endohydrolase. similar to some closely linked pseudogenes. similar to CYP79C1 (cytochrome P450, family 79, subfamily C, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G79370.1); similar to Cytochrome P450 79A1 (Tyrosine N-monooxygenase) (Cytochrome P450Tyr) (GB:Q43135); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.231869065900949 -1.63162901522082 0.131333317694547 1 0.585701939339528 4.59205799231161 -0.231869065900949 0.192546945562529
AT1G04400_at 10.8630988717924 11.0133082895345 10.8879197382242 11.0093078512067 11.2745610398235 11.0550308639390 10.3805758074000 10.5604924715469 10.2639606921173 10.5147988363115 10.5987663460690 10.0935292726125 10.5067708270310 10.1572956101226 10.2224016745499 10.2781248641540 10.2984242352582 10.4058174861495 10.3705587686483 0.0816954231971543 0.0789662482472335 0.0825259700574226 0.079435598182425 0.0796508328087464 0.091045342281495 0.0803425310226927 0.080041101149352 0.086469737565034 0.082282550823555 0.0807269923390171 0.0814574741614 0.0839298517801159 0.090871199314925 0.0797796661737463 0.0799787599356847 0.0837883377168846 0.0818635045932345 0.0832607112597833 1 0|1 /|- 1185792 1186247 1185997.2 1185549 1188516 - gene protein_coding_gene FALSE TRUE AT1G04400.1|AT1G04400.2 CRY2 (CRYPTOCHROME 2) Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Identical to Cryptochrome-2 (Blue light photoreceptor) (CRY2) [Arabidopsis Thaliana] (GB:Q96524;GB:Q42549;GB:Q42603;GB:Q42604;GB:Q8VWL9;GB:Q8VZY9); similar to CRY1 (CRYPTOCHROME 1, OUT OF PHASE 2) [Arabidopsis thaliana] (TAIR:AT4G08920.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67176.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67179.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67178.1); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain Deoxyribodipyrimidine photolyase, class 1; (InterPro:IPR002081) 0.144685601848753 1.63159863035126 0.131339773950252 1 0.585662300102288 21.2321605609429 0.144685601848753 0.0594113188067457
AT3G50410_at 1.73589450469055 1.66393502193058 1.82234068096656 1.89462139156318 1.57525050019153 2.05156388009647 1.55716177138442 1.41093766185617 1.8280906772611 1.75196628783409 1.68005833118183 1.60205334334277 2.10938359090126 1.87740832392594 1.63220536705402 1.77343856579409 2.0062286260086 1.63195371321574 1.56933534822734 0.243888068101368 0.239876207272248 0.252413598351190 0.24936555945776 0.242715030891696 0.242698258120083 0.242375875199215 0.237216856496767 0.236663027528309 0.242606183880350 0.240886906844758 0.249918898879551 0.242794457711555 0.240910561488540 0.249393159710657 0.237827712877047 0.239055186618066 0.24692165834735 0.249760396844269 3 3 + 18721092 18721588 18721347.091 18720729 18721741 + gene protein_coding_gene FALSE TRUE AT3G50410.1 OBP1 (OBF BINDING PROTEIN 1); DNA binding / transcription factor Arabidopsis Dof protein containing a single 51-amino acid zinc finger DNA-binding domain, which may play an important roles in plant growth and development. Identical to Dof zinc finger protein DOF3.4 (AtDOF3.4) (OBF-binding protein 1) (DOF3.4) [Arabidopsis Thaliana] (GB:Q39088;GB:Q9M2R8); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G66940.1); similar to DNA binding with one finger 5 protein [Pisum sativum] (GB:BAC81662.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.158294500738097 1.63149469596010 0.131361860321669 1 0.585526713442261 3.46674084514437 0.158294500738097 0.0880129878439947
AT2G34040_at 6.9066631644803 6.67936741003094 6.80381829371128 6.6942652619248 6.75635362206018 6.79071615981241 6.22141677942933 5.85283869441048 6.20494283634471 5.9980661656061 6.29340188546572 6.35007388650755 5.86720610691348 5.8460608523557 6.06294515645963 5.83135004459159 5.9001802819618 5.37593369517171 5.74133771028675 0.221181783676028 0.234221559833692 0.226123398949277 0.224305213783667 0.225294150067146 0.228375843296602 0.219655592930530 0.221504323227629 0.225996503850533 0.221542122082087 0.219655592930530 0.225321193777999 0.225026128204952 0.24132314409777 0.219655592930530 0.219655592930530 0.232949229847981 0.230584003765142 0.219736522246863 2 2|0 -|/ 14385108 14386032 14385454.889 14384817 14389573 - gene protein_coding_gene FALSE TRUE AT2G34040.1|AT2G34040.2 apoptosis inhibitory 5 (API5) family protein similar to apoptosis inhibitory 5 (API5) family protein [Arabidopsis thaliana] (TAIR:AT1G29030.1); similar to putative fibroblast growth factor 2-interacting factor [Oryza sativa (japonica cultivar-group)] (GB:BAD15974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383)|similar to apoptosis inhibitory 5 (API5) family protein [Arabidopsis thaliana] (TAIR:AT1G29030.1); similar to putative fibroblast growth factor 2-interacting factor [Oryza sativa (japonica cultivar-group)] (GB:BAD15974.1); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383) 0.152830953444312 1.63144864932091 0.131371646421626 1 0.585466645299492 12.5493513696113 0.152830953444312 0.0775269086097153
AT1G58100_at 5.52544211229239 4.94551530918025 4.87054088489379 4.9913922931705 5.20110969620787 5.30554257714988 3.77065017582053 4.59649517839981 4.72651311325194 4.80720108389704 5.18145981931638 4.92007618828386 4.8580614331047 4.76251840508856 4.69741150008447 5.19050435060011 4.81418039376819 4.64127401234883 4.9483646783453 0.185543081397210 0.186815365729246 0.189459893076766 0.200583089674247 0.187507808262188 0.190049251265846 0.212884729624563 0.189677561617051 0.192770392637718 0.194820689355745 0.192303541767837 0.185543081397210 0.190986883302611 0.196398092646817 0.193203132933390 0.189161397625209 0.185543081397210 0.198676259904438 0.187060750087856 1 1 - 21516467 21516820 21516626.182 21516049 21517687 - gene protein_coding_gene FALSE TRUE AT1G58100.1|AT1G58100.2 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.219223403295948 1.63137182671643 0.131387974644654 1 0.585366431867225 9.75610872238395 0.219223403295948 0.176807872124171
AT3G19510_at 5.36394697310875 5.6757424634076 5.45127032387836 5.48370261250654 5.35132529332001 5.47621717912032 4.61524147707624 4.86081816750409 4.42961176084322 5.06627074290914 4.85241918698108 5.22121574682159 4.79492914330891 4.50913964900636 4.33699256125753 4.93624366727482 4.49176687799734 4.8337343197343 4.77883504954794 0.184526869249223 0.182030806286708 0.186993126917797 0.179401764915257 0.184511694650991 0.185121086008871 0.187996415316467 0.182395677907213 0.188229847282915 0.185480088427361 0.187915508773122 0.188592460299645 0.181431755843953 0.182892995587489 0.181428773867591 0.183420924474137 0.192729191964364 0.189771453059885 0.182447934475632 3 3|0 -|/ 6763229 6763946 6763551.889 6762770 6766570 - gene protein_coding_gene FALSE TRUE AT3G19510.1 homeobox protein (HAT 3.1) Identical to Homeobox protein HAT3.1 (HAT3.1) [Arabidopsis Thaliana] (GB:Q04996;GB:Q9LT66); similar to PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A), transcription factor [Arabidopsis thaliana] (TAIR:AT4G29940.1); similar to Homeobox protein HOX1A (GB:P46605); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Homeobox; (InterPro:IPR001356) 0.150253770773224 1.63130545807871 0.131402082379965 1 0.585279857583199 10.0374302254808 0.150253770773224 0.0722229442938793
AT1G77920_at 8.358905888313 8.83756842938281 8.88031525944836 8.99111449278517 9.33670903910248 8.69200673639393 8.00990240320788 7.78923648438326 3.7785016690556 6.05081087578959 3.68012347152698 3.30815599829686 4.34771736652401 3.92268873721976 2.95512655517889 4.76258490059538 6.23679602762064 4.07240371179836 3.65929225973409 0.241220629208828 0.238374466172721 0.239131360668454 0.238939934096699 0.240058964928456 0.246151191303948 0.240059580543243 0.236960391659674 0.247416310336267 0.242077169527052 0.236960391659674 0.239971491285166 0.244970832464226 0.249942791125095 0.241838164866315 0.236960391659674 0.25656391530494 0.245560869797814 0.243881836643658 1 1 + 29304746 29305477 29305130.364 29303137 29305757 + gene protein_coding_gene FALSE TRUE AT1G77920.1 bZIP family transcription factor Identical to Transcription factor TGA7 (AtbZIP50) (TGA7) [Arabidopsis Thaliana] (GB:Q93ZE2;GB:Q9SH09); similar to TGA3 (TGA1a-related gene 3), DNA binding / calmodulin binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G22070.1); similar to TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] (GB:AAK84888.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Asp/Glu racemase; (InterPro:IPR001920); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.195315537589712 1.63128412445006 0.131406617474942 1 0.585252029451073 12.9404204404379 0.195315537589712 0.145379185053405
AT3G04100_at 2.54036942586494 2.46089971878789 2.82003038574024 2.27125510049397 2.56052676365058 2.81581156661834 2.20719247025602 2.47829836721789 3.28564420734497 2.59945285946598 2.7446812556099 2.93655133068579 2.95401688260179 3.58695578292383 3.10535177292163 3.04563969883502 3.23808034680774 3.20070584018386 2.95670964995534 0.193831948257279 0.19745176070738 0.189786825947321 0.214910277884449 0.199157649834329 0.207665700511687 0.190482575322983 0.191870437317179 0.199807137639471 0.196220668123573 0.199040423384788 0.201384694817711 0.194583894286024 0.194881777370191 0.194815261261157 0.189786825947321 0.189786825947321 0.198672273595007 0.195017538751934 3 3 + 1075575 1075905 1075794.636 1075306 1075929 + gene protein_coding_gene FALSE TRUE AT3G04100.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G28460.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE92216.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.174722458413264 1.63087815204258 0.131492945333964 1 0.584722508325432 5.54368135953371 0.174722458413264 0.115589438105451
AT1G68480_at 1.6581010538694 1.21538645042921 1.73870113935054 1.41380043304521 1.58317600465287 1.80364255139799 1.38102496977835 1.26804339527641 1.45380889663671 1.45024102044032 1.73690106462794 1.13097359423724 1.51800006655314 1.26508953107941 1.43066315779609 1.56970897644341 1.68093078464398 1.97495761094711 1.46812672021162 0.222136144280693 0.225236088558494 0.236570633018983 0.227325479951405 0.227774907914027 0.235843698645206 0.236377708615422 0.222136144280693 0.24704629132667 0.232986599432005 0.227039488861771 0.222136144280693 0.226670351341117 0.224940919190569 0.223985362576327 0.227856120158039 0.231241178372519 0.224218511115215 0.228638022777049 1 1 - 25688240 25688567 25688378.364 25687977 25689828 - gene protein_coding_gene FALSE TRUE AT1G68480.1 JAG (JAGGED); nucleic acid binding / zinc ion binding Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development. similar to JGL/NUB (NUBBIN), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G13400.1); similar to C2H2 zinc-finger transcription factor -like [Oryza sativa (japonica cultivar-group)] (GB:BAB03385.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.167600975317401 1.63084098225197 0.131500851797394 1 0.584674030500823 3.00563215508529 0.167600975317401 0.104254056299445
AT3G12870_at 2.39025088548203 2.51938309561125 2.68847453636726 2.14216419582459 1.92196554522072 2.00317299699122 2.10785052437899 2.07822347620569 1.9407391657391 1.98371187281235 2.17089807306001 2.90286597156914 2.26284653985733 1.99255417347860 3.03280051987675 2.16821404983690 2.50608618353452 2.36112299949243 2.11141919470214 0.255033229661526 0.257767907198409 0.257115851323036 0.265579875811921 0.264444577350233 0.258880504143662 0.260664134760033 0.254626460499689 0.264518248072242 0.263650157534378 0.257419095391921 0.257836050009340 0.253055871832543 0.253055871832543 0.266732776669303 0.258428631309723 0.264625691142221 0.270583763174118 0.260400761630603 3 3 - 4094424 4094967 4094703.818 4094424 4095044 - gene protein_coding_gene FALSE TRUE AT3G12870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56120.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK09219.1); similar to Os03g0778400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051445.1) 0.163867071300903 1.62911417960306 0.131868627445088 1 0.582422586326568 4.44975081113825 0.163867071300903 0.0982917780258989
AT1G21540_at 3.969462250764 4.01741628895979 2.95771477446856 2.71754443242543 2.69557698864424 2.63603562578767 2.94066101622633 2.57240997137076 3.07443305605751 3.10340131949288 3.21123425680448 4.12302287594182 3.21567185760179 3.12887196533873 3.65472571797049 2.71657278828873 2.85930975074264 3.33814331630951 2.70994383336762 0.212232832609999 0.216802431772259 0.196731195310631 0.198763087990305 0.200201876667166 0.201037158908003 0.197030157003796 0.201454630908683 0.201443074526546 0.198196007953772 0.196731195310631 0.199378041867367 0.203337702220792 0.197818202031512 0.200715781962873 0.196731195310631 0.205002984992445 0.209065246180113 0.204649523350047 1 1 - 7548747 7549279 7549119.636 7548603 7550554 - gene protein_coding_gene FALSE TRUE AT1G21540.1 AMP-binding protein, putative similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G16340.1); similar to catalytic [Arabidopsis thaliana] (TAIR:AT1G21530.2); similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G77240.1); similar to amp-binding protein [Brassica napus] (GB:CAA64328.1); similar to H0103C06.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86098.1); similar to Os04g0674700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054242.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.152459048339987 -1.62907392037419 0.131877212724652 1 0.582370111738567 6.18512106979623 -0.152459048339987 0.0772249314165722
AT2G33600_at 6.162322141625 6.01801860319726 5.95028674322178 5.75128643176828 6.17803379149604 5.56873846386599 6.50152375993969 6.35633817519979 5.28176523178514 5.52622452187613 6.03224466747348 6.20390710169987 6.01126294186132 6.23974124965869 6.47992619514964 6.24811208719152 5.7327532543301 5.8840642948193 5.26136195774336 0.180413934447157 0.184267325577553 0.183950196434362 0.185419961292791 0.191918340515189 0.191620301611932 0.202031831035949 0.184023688415296 0.181672144704676 0.187824901496088 0.199836997371558 0.187063972778680 0.183436369554492 0.194821858287831 0.179551907730108 0.197782030278152 0.191042694454422 0.186054063979826 0.191071116769554 2 2 + 14234638 14235237 14234965.455 14233842 14235787 + gene protein_coding_gene FALSE TRUE AT2G33600.1 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33590.1); similar to Os06g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058105.1); similar to Os06g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058104.1); similar to cinnamoyl CoA reductase 2 [Solanum tuberosum] (GB:AAN71762.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.175043295576185 1.62872113855337 0.131952464584033 1 0.581910321494289 11.7910445360348 0.175043295576185 0.116442037649421
AT3G28730_at 7.91593545130206 7.88933062004986 7.87354874936723 7.7610408653173 8.22650306902648 8.06309185696793 7.89231731295647 7.81036714012692 7.94064692703028 7.8393153099111 7.55277516261199 7.3197710562895 7.50121267341867 7.62097678622027 7.43942830551866 7.59643967549726 7.89173252196882 7.80212995956383 8.12591410209844 0.135980847818706 0.130950877243083 0.137407266954536 0.130461953414494 0.139366609514319 0.133864877094103 0.134946396311328 0.138401746637802 0.140502927964802 0.135202419501746 0.131034897251658 0.132565409639616 0.141334260597148 0.146527134918601 0.145583662432642 0.135166170245852 0.135931279519577 0.138592126060763 0.133384453835711 3 3|0 +|/ 10788725 10789677 10789114 10786126 10789966 + gene protein_coding_gene FALSE TRUE AT3G28730.1 ATHMG (HIGH MOBILITY GROUP, STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1); transcription factor encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1 Identical to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (SSRP1) [Arabidopsis Thaliana] (GB:Q05153;GB:Q9LHA2); similar to HMGB1 (HIGH MOBILITY GROUP B 1) [Arabidopsis thaliana] (TAIR:AT3G51880.3); similar to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (GB:O04235); similar to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (GB:Q39601); similar to early drought induced protein [Oryza sativa (indica cultivar-group)] (GB:AAM46895.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain Structure-specific recognition protein; (InterPro:IPR000969); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.137004337324789 -1.62810437744581 0.132084117063605 1 0.581106616953617 15.7086087401307 -0.137004337324789 0.0374314061830492
AT1G23080_at 7.13884422894126 7.40968112375038 6.18742988028841 6.20062637893634 7.2981519580012 6.97415497737575 7.26462456545248 7.27198058361413 7.6140460593834 7.35209957382918 8.67675821093065 8.71444391292792 8.74080685231925 8.42275721326585 8.85230050103279 8.66304426506757 7.8270108867939 8.3756906600822 7.91550766531798 0.156177321181444 0.149623351258842 0.168111119944457 0.172374452871738 0.157164820147384 0.158207993165794 0.155595582153939 0.157868201561314 0.169633316666243 0.161322151689768 0.153311404302012 0.155197355320693 0.161208546638621 0.164027102128337 0.171443525622419 0.156232243306376 0.165859289214163 0.166926100548962 0.151894107306186 1 1|0 -|/ 8181642 8182314 8181974 8180566 8183559 - gene protein_coding_gene FALSE TRUE AT1G23080.1|AT1G23080.2|AT1G23080.3 PIN7 (PIN-FORMED 7); auxin:hydrogen symporter/ transporter|PIN7 (PIN-FORMED 7); auxin:hydrogen symporter|PIN7 (PIN-FORMED 7) Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. Identical to Auxin efflux carrier component 7 (AtPIN7) (PIN7) [Arabidopsis Thaliana] (GB:Q940Y5;GB:O49308;GB:Q9SQH5); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G01420.2); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)|Identical to Auxin efflux carrier component 7 (AtPIN7) (PIN7) [Arabidopsis Thaliana] (GB:Q940Y5;GB:O49308;GB:Q9SQH5); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT2G01420.1); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)|Identical to Auxin efflux carrier component 7 (AtPIN7) (PIN7) [Arabidopsis Thaliana] (GB:Q940Y5;GB:O49308;GB:Q9SQH5); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT2G01420.1); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.150345984918264 1.62768658512610 0.132173364068978 1 0.580562288844978 15.0488463765347 0.150345984918264 0.0731255634714072
AT2G03260_at 2.31838327872412 2.55432028401895 2.5947554627735 2.61651703155379 1.88365204794307 2.26795336723094 2.91336833218266 2.44909411280652 2.37001478920987 2.87369321658865 2.427521361638 2.50516176230975 2.60670963418015 2.47308858467554 2.40278297082193 2.32539323657644 2.71263138163862 2.57434393379488 2.6451613476426 0.224559365478636 0.227793275621258 0.235764955139105 0.228979660113689 0.228376527897942 0.226807211675229 0.228342092079556 0.231567734176789 0.240473263914642 0.235232691414088 0.225473530412408 0.224981091811301 0.225260758686785 0.225934528769125 0.228977953795043 0.225165278009071 0.234525796886198 0.224896663787264 0.233456251151557 2 2|0 -|/ 988150 988906 988513.3 987931 992329 - gene protein_coding_gene FALSE TRUE AT2G03260.1 EXS family protein / ERD1/XPR1/SYG1 family protein similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03240.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.172120517083515 -1.62761606797606 0.132188432898016 1 0.580470422234746 5.01629410266325 -0.172120517083515 0.112069148900639
AT3G21810_at 5.97011355320813 6.0250477327354 5.29756183071608 5.7733602452355 5.47661028874274 4.780030305858 4.42933920885538 4.58899424686766 4.81003875931059 4.33693096235525 4.15400784873141 4.25084196099397 4.13729835932426 4.67070895245749 3.41462084984604 4.23434439667811 3.81504809744987 4.29593662194833 4.63791143893915 0.247580799570424 0.238990391327447 0.248279992326191 0.233950395904674 0.233950395904674 0.236221996039466 0.233950395904674 0.237985577786281 0.242124739337703 0.240763568576519 0.242629966696387 0.238216255043923 0.237417877136761 0.242071383512627 0.248056933226323 0.23989274377325 0.249616485942938 0.238759434641179 0.238024981410403 3 3|0 +|/ 7687456 7688342 7687824.556 7684437 7688623 + gene protein_coding_gene FALSE TRUE AT3G21810.1 zinc finger (CCCH-type) family protein similar to BRI1-KD interacting protein 105 [Oryza sativa (japonica cultivar-group)] (GB:BAD11333.1); similar to Os02g0161200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.197421259359105 -1.62752189289320 0.132208559565778 1 0.580347738682054 9.65091281292587 -0.197421259359105 0.148878847724961
AT4G03110_at 7.39231487337225 6.97691166379194 7.1197452930879 6.69431135586626 7.8052598627477 7.38994857555111 8.45962820683963 8.1145518741895 9.10951394997863 8.29580353479178 9.45615816950401 8.78949863250781 9.0550359010714 9.34533620419492 8.45124943056902 8.47761504395733 7.99447060077258 8.76329212777131 8.66043207492261 0.181541367001588 0.183879111545921 0.196137549888669 0.200996556938319 0.180368079310637 0.191768519571947 0.17742030819014 0.178258594851439 0.183333660796487 0.188692545701130 0.181184245177517 0.178480319819428 0.176589144076711 0.181498528155528 0.175825150215793 0.178632809157493 0.182205484573689 0.181648157351052 0.177584550706283 4 4 - 1376623 1377286 1377080.727 1376306 1379420 - gene protein_coding_gene FALSE TRUE AT4G03110.1|AT4G03110.2 RNA-binding protein, putative similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G03457.1); similar to Os01g0938200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045340.1); similar to Os05g0373400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055367.1); similar to 'unknown protein, contains RNA recognition motif,PF00076' [Oryza sativa (japonica cultivar-group)] (GB:AAT58838.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.190268277752938 -1.62745879930613 0.132222045153956 1 0.580265547824411 16.2341665633597 -0.190268277752938 0.138995864410556
AT1G07850_at 1.54061588543208 1.16848644448984 1.31059405403759 1.24460236860062 1.13539011840172 1.48052646724786 1.57748946185261 1.34227417174269 1.871734784786 1.86414065834758 1.61833523351658 1.56797031757940 1.50851782898204 1.46462142149365 1.63541085236544 1.59716531619780 1.77459564008021 1.88610810519074 1.79441605877570 0.213247773603681 0.203667572354448 0.204797506163493 0.214902675078602 0.213479912827166 0.209279788465188 0.206580093679676 0.204517550871434 0.212248524364317 0.213199676794782 0.212502339808894 0.203667572354448 0.214635961239296 0.205574079992150 0.203711900241620 0.205452707977022 0.210619135321204 0.215762066218965 0.215535303032441 1 1 + 2427964 2428431 2428183.273 2426742 2428537 + gene protein_coding_gene FALSE TRUE AT1G07850.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to Protein of unknown function DUF604 [Medicago truncatula] (GB:ABE81721.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) -0.163139075009026 -1.62659321884292 0.13240717665363 1 0.579138156699367 3.08750791650671 -0.163139075009026 0.097477646831717
AT1G67230_at 8.02182529172205 8.19490651850118 7.90198149558528 8.1277582221516 8.38610743373544 8.36394148490183 8.3345341307185 8.33006975778405 7.90526557316612 8.2883068720656 8.26066598463488 7.9791910502388 8.03183688595335 7.87933699899358 7.843444947739 8.2117562059212 7.92540508220328 7.6609292658028 8.49547402045418 0.135579899069111 0.139770213735568 0.144800458591631 0.133606424171220 0.131081475649000 0.134887949423824 0.131587178789943 0.140594706929546 0.145187039004695 0.137503707145396 0.142239310376654 0.137686944056463 0.135837169648985 0.136818589622406 0.141437766817328 0.136956539217599 0.134785995385560 0.156451395194161 0.133928967911227 1 1 - 25155225 25156005 25155557.545 25154914 25159984 - gene protein_coding_gene FALSE TRUE AT1G67230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68790.1); similar to nuclear matrix constituent protein-related [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] (GB:BAA20407.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.140499059065340 -1.62639092398473 0.132450476764870 1 0.57887472370001 16.3095170208447 -0.140499059065340 0.0493868726287685
AT1G65220_at 9.12834640056085 8.97686593176773 8.84399559773574 8.65058005915014 9.2289673037763 8.86622372210293 8.81084381520698 8.92308796485172 9.13122931365468 9.04978460884834 8.96031106595293 8.93024989912819 9.03514296619663 9.16085097784411 8.61877492657526 9.03339242588168 8.78832380673743 8.48465290444386 9.17761798022395 0.100437714377491 0.0977858969751277 0.105343763443068 0.0976801057405669 0.0985263757459877 0.100165935074527 0.0960053804297658 0.0955930816271362 0.101534978446123 0.0981661480493537 0.0971349222667175 0.0968761291903649 0.0947128066767519 0.0987549316575083 0.104986900254282 0.0982061364153733 0.102492210180768 0.103641467161071 0.0947128066767519 1 0|1 /|+ 24231747 24232417 24232064.222 24229774 24232633 + gene protein_coding_gene FALSE TRUE AT1G65220.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36230.1); similar to Os11g0414000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067760.1); similar to putative protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95492.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307) -0.152712976693093 -1.62627502990059 0.132475288900229 1 0.578723812245853 17.9266170189794 -0.152712976693093 0.0782654058137044
AT1G10900_at 8.79896915129138 8.98567061741199 9.68280371567693 9.68930729410017 9.88017175688452 9.67783638599134 10.2908758383819 10.0368565725783 9.1577666016135 9.84322217890114 9.7341103171923 9.466449226882 9.45635700733139 9.60673575051744 9.20521128769145 9.9347593073589 9.97883282876313 9.7813730480129 9.67033846866491 0.113154686035369 0.114876267077561 0.114365944014350 0.111846354559736 0.111158180070038 0.114742840799079 0.111158180070038 0.112468377720028 0.118853873864514 0.114048635511588 0.115731965090461 0.116227765437605 0.114078407040033 0.118937208767110 0.113795379552414 0.114264790399566 0.11310165947928 0.114960565751868 0.111233343929228 1 1 - 3632419 3633252 3632840 3632234 3637141 - gene protein_coding_gene FALSE TRUE AT1G10900.1 phosphatidylinositol-4-phosphate 5-kinase family protein Identical to Phosphatidylinositol-4-phosphate 5-kinase 7 (EC 2.7.1.68) (AtPIP5K7) (1-phosphatidylinositol-4-phosphate kinase 7) (PtdIns(4)P-5-kinase 7) (Diphosphoinositide kinase 7) (AtP5K2) (PIP5K7) [Arabidopsis Thaliana] (GB:Q9SUI2;GB:O04095); similar to PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT3G09920.2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to Os03g0701800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051005.1); similar to phosphatidylinositol-4-phosphate 5-kinase [Oryza sativa (japonica cultivar-group)] (GB:CAD27794.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) (GB:Q6EX42); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) 0.146403128453094 1.62555872476164 0.132628736142216 1 0.577791212768415 19.2316052564288 0.146403128453094 0.064835507458538
AT1G48980_at 0.513447714896536 0.932728614588366 0.73186265457455 1.11744968490856 0.530325889944916 0.81253670040911 0.934389480608826 1.07127047791104 1.34264694800598 1.16790194117347 0.467081196685372 0.536968575312017 1.28348449721381 0.929453226340799 1.12360919543356 0.888348471239767 0.767304855251075 1.07470301074714 0.979489872236718 0.198202342623846 0.197413745467396 0.202679672462792 0.204549528992092 0.198618485783661 0.207937947614525 0.203280750902066 0.197413745467396 0.200193029304812 0.20230160179547 0.205768860180883 0.199296356648845 0.199876551723630 0.202322186349673 0.202526583803275 0.208864605105403 0.197618457117473 0.208946772855882 0.207193938189538 1 1|0 +|/ 18123112 18123735 18123484 18121685 18124270 + gene protein_coding_gene FALSE TRUE AT1G48980.1|AT1G48980.2 similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G17970.2); similar to Os06g0138200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056738.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.2); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.172196232409679 -1.62555372944617 0.132629806792478 1 0.577784709904443 1.85410909339691 -0.172196232409679 0.112532536584277
AT1G69470_at 1.30909619015147 1.00351743872547 1.53428265495606 1.32020553591084 1.33034542969785 1.36468928474004 1.27782423233537 1.39713958749322 1.49992199715045 1.42174993710420 1.72159742617667 1.23453024872986 1.89147999525942 1.28286788940531 1.58864902397041 1.32841535647291 1.79082634515269 1.61339052343509 1.28242839632689 0.187963339256506 0.194632004317306 0.187963339256506 0.188903396897324 0.190833191199744 0.197422647205657 0.192214418841223 0.193585788553390 0.198923291412481 0.187963339256506 0.190082280254116 0.193027493892874 0.187963339256506 0.192650121110645 0.187963339256506 0.191968197806461 0.188753908362250 0.210856758547778 0.189267802191597 1 1 + 26117293 26117619 26117448.364 26117238 26117660 + gene protein_coding_gene FALSE TRUE AT1G69470.1 heat shock protein binding contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.147794594182297 1.62535744167028 0.132671883367568 1 0.577529193050825 2.79605573321919 0.147794594182297 0.0680487908339152
AT3G14400_at 6.67309458130089 6.60686079091293 6.85082092510105 6.99900129667632 7.37640124595775 6.75203251029953 7.3029055049072 6.04789328486621 6.32373052255965 6.16353243113459 6.52447561812617 6.77327877529411 6.51915284489212 6.74784604020216 6.40668518715973 6.66299348214167 6.24559617359045 5.81394009152867 6.26283338315976 0.19879961037384 0.194417034466837 0.20019835821206 0.200547420962636 0.196980247020945 0.201600082000002 0.194417034466837 0.202973410331551 0.206482213484468 0.205778472158884 0.200878825086031 0.195694483004485 0.199913071180350 0.201100471083107 0.200132621377176 0.198278307158458 0.213768203573977 0.222648230716800 0.199527891690950 3 3 - 4812296 4812800 4812569.545 4811539 4815504 - gene protein_coding_gene FALSE TRUE AT3G14400.1 UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G57990.1); similar to Os05g0510300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056008.1); similar to 'unknown protein, contains ubiquitin carboxyl-terminal hydrolase' [Oryza sativa (japonica cultivar-group)] (GB:AAT44134.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.274294684172037 1.62512762548155 0.132721162139645 1 0.57723005325222 13.1820153369535 0.274294684172037 0.244199466861523
AT1G05205_at 7.15417728273836 7.1386519337055 7.12789550229989 6.88772520290566 6.32159327832116 6.61520612591135 6.13330936510216 6.57433815962145 5.70481393280507 5.87922224006544 5.93568338153245 6.6778332317749 5.83207409087748 5.90969217156853 6.92977584050434 6.19142059813422 5.66340760841442 6.37936382414082 5.96048281710812 0.218911997061721 0.226535044421500 0.229923602808894 0.230576657642541 0.222969991878261 0.218911997061721 0.218911997061721 0.219679132583653 0.240315330489569 0.226809760752772 0.225539443487614 0.218911997061721 0.225662358269468 0.225789520041557 0.227285491465249 0.221843696708173 0.237880792587841 0.222443205607948 0.219366667391028 1 1|0 -|/ 1509384 1510223 1509867.75 1509212 1510280 - gene protein_coding_gene FALSE TRUE AT1G05205.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45491.1) 0.164859594388247 1.62486746205356 0.132776967694633 1 0.576891441372301 12.7631517763397 0.164859594388247 0.100704984734534
AT3G26630_at 3.85931408375515 5.17501239135499 4.89419299473405 5.00440834414691 6.01744377722643 5.48949308548638 6.49535383233747 6.69052896091227 5.40121232985733 5.11213199485275 5.2062555708133 4.59950993319318 4.86467890455442 5.08028777527127 4.86461053059139 5.0767367905673 4.35520425914427 4.63697548069846 5.04935641929105 0.253568003394304 0.253867794202449 0.255299920768997 0.256057538933016 0.259981271213443 0.264163372558286 0.254585535924425 0.267773587205405 0.252331455145436 0.253711196038535 0.261037941331207 0.252276324108751 0.252319722193396 0.249387958837536 0.255515085326117 0.249846921423350 0.257929725928248 0.255556269973025 0.249387958837536 3 3 - 9792841 9793384 9793124.273 9792608 9794222 - gene protein_coding_gene FALSE TRUE AT3G26630.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93365.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.277851137877188 -1.62474181303945 0.132803927073745 1 0.576727915909118 10.4647680938798 -0.277851137877188 0.248382262314605
AT4G17720_at 8.58014263691295 8.65858104448353 8.82182548939208 8.81653154074653 8.03985117072556 7.98597210443533 7.60540221732312 7.30187269967133 6.89746171973362 6.77844517782757 6.39003811150493 7.00490035932649 6.66416021868478 6.77070615599675 6.70612688153674 6.66516908973233 7.17016349178263 6.28245610893507 6.72888039536254 0.203034726536606 0.20859022599525 0.209620470323481 0.206691928420279 0.202077915209445 0.208905348895409 0.20351397935119 0.208546162541429 0.204329974091253 0.20768589103537 0.212440098401952 0.203281369877861 0.214051442280632 0.20629719876866 0.214083244399374 0.207478574417562 0.208346480534267 0.218882841156742 0.210470460917693 4 4 - 9862723 9863186 9862937.727 9862459 9864676 - gene protein_coding_gene FALSE TRUE AT4G17720.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD65610.1); similar to RNA recognition motif (RRM)-containing protein [Brassica oleracea] (GB:ABD65158.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.142332357303349 1.62409932604826 0.132941855339758 1 0.575891867164345 14.980427771209 0.142332357303349 0.0550557934991696
AT1G11060_at 3.40755474309743 3.81792953388739 3.23822762053144 3.26071838547048 3.80686982264751 3.15237418944572 3.5784854042827 3.34960870658145 3.38255069570354 3.09685196055236 3.31458737381476 2.99591334775972 3.03269237779499 3.29339519104915 2.69213876098918 3.03268152222773 2.57192228559683 2.89486879024313 3.07585956615832 0.213497497436238 0.212591671024314 0.216280339219243 0.210658134346109 0.214490496083361 0.226583613494778 0.209458432583482 0.211155327406933 0.221008791108760 0.210898287289181 0.209478422355769 0.211701856537725 0.209458432583482 0.210833280254160 0.216216748032559 0.209458432583482 0.239636711126797 0.212601328330298 0.209458432583482 1 1|0 +|/ 3688293 3689172 3688737.111 3684568 3689847 + gene protein_coding_gene FALSE TRUE AT1G11060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61030.1); similar to Os10g0497000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064956.1); similar to putative dentin phosphoryn protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58277.1); contains domain ARM repeat (SSF48371); contains domain gb def: Hypothetical protein T19D16.5 (PTHR22100:SF10); contains domain FAMILY NOT NAMED (PTHR22100) -0.190204771862712 -1.62394431215191 0.132975152466027 1 0.575690180786527 6.53327723257093 -0.190204771862712 0.139484891007358
AT4G30110_at 6.86907514031749 6.86425169977808 8.59955494605376 8.58074382503906 8.37524987957461 8.10836418557066 8.86726473409196 8.83698126527254 9.08181877891733 9.36723529094245 8.9529279918559 8.93000389567198 8.75047582443554 9.1197814942854 8.37371614422979 9.18235344476179 9.00052358882117 9.141679279229 9.17884422330414 0.158100330929311 0.164799773465418 0.150238017141905 0.141300294390253 0.148111977283225 0.157305823479536 0.154540556471020 0.147777247056008 0.155941939591404 0.142001877668731 0.142170238622820 0.141300294390253 0.141300294390253 0.149228882142950 0.146504917176450 0.144179806445402 0.149529649988586 0.144291566594362 0.142618530680183 4 4 - 14720287 14720817 14720501.091 14720257 14724584 - gene protein_coding_gene FALSE TRUE AT4G30110.1 HMA2 (Heavy metal ATPase 2); cadmium-transporting ATPase encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc Identical to Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3) (EC 3.6.3.5) (HMA2) [Arabidopsis Thaliana] (GB:Q9SZW4); similar to HMA3 (Heavy metal ATPase 3), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT4G30120.1); similar to HMA4 (Heavy metal ATPase 4), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G19110.1); similar to Cadmium/zinc-transporting ATPase 4 (GB:Q9SZW5); similar to putative heavy metal transporting P-type ATPase [Thlaspi caerulescens] (GB:CAD98808.1); similar to P1B-type heavy metal transporting ATPase [Thlaspi caerulescens] (GB:AAS89468.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; (InterPro:IPR006404); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.139359138025592 1.62391688431067 0.132981044758441 1 0.575654495965242 17.2080517789453 0.139359138025592 0.0466035232875978
AT4G10550_at 2.29110291535239 2.04292780526215 1.97427362790365 1.99220559849671 2.21977935742651 2.00749788157045 2.38333800781783 2.27618906609417 2.87900469473675 2.26087036858967 2.34753106260033 1.88804823652309 2.35955292009916 2.8060842282497 2.67788638956324 2.46550157489342 1.82174839491336 2.38640103120355 2.15686054766797 0.198027591739429 0.20186128348214 0.203857177311810 0.200628764180579 0.200763904566841 0.203052039186182 0.203265164223268 0.200999077850126 0.214878042500723 0.200975822645659 0.207575119108528 0.205428190679051 0.198548124716229 0.203195999090257 0.203951886497099 0.202325802374982 0.211594244083960 0.202414369182108 0.209059363715297 4 4 - 6516621 6517124 6516844.182 6516488 6520308 - gene protein_coding_gene FALSE TRUE AT4G10550.1|AT4G10550.2 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10510.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32950.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020)|similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10510.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259) -0.144050653095686 -1.62376189080551 0.133014346174480 1 0.575452849151552 4.53658399920075 -0.144050653095686 0.0595611721111697
AT3G54850_at 6.56604906494257 7.00282509471652 6.816845291134 6.74598828777764 7.18702016854743 7.07869887684845 5.95127800541152 6.24621820877079 5.37408746086164 5.21279795314381 4.9757609087925 5.13313083768166 4.8999348011272 4.98881652973852 4.71883301467865 5.20573679419209 5.56547604125496 5.01368157166733 5.18308009912185 0.25930754803006 0.256126673619558 0.257657440857345 0.256214255260860 0.258814986257398 0.254796460368677 0.256510765713329 0.250419608884058 0.272289674491120 0.266714709028702 0.258022032651622 0.255244324532125 0.259713516054581 0.257453423711165 0.260702580959516 0.250419608884058 0.257221561493778 0.254400539740916 0.261651709135886 3 3 + 20334257 20334701 20334461.455 20332400 20334998 + gene protein_coding_gene FALSE TRUE AT3G54850.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein Identical to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14) (PUB14) [Arabidopsis Thaliana] (GB:Q8VZ40;GB:Q9SV34); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT3G46510.1); similar to Os06g0102700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056535.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD67947.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.160780851982855 1.62343033542339 0.133085607856282 1 0.575021532223379 11.8590286164856 0.160780851982855 0.0939158015855166
AT2G22930_at 2.72373755425920 2.81205384287309 2.637526442158 2.69824902767077 2.19262786766335 2.48056724324920 2.10985605215200 2.41928792391065 2.08795146299870 2.29698688935313 1.93631099471548 2.12901235809467 2.55923724089243 2.58091538268696 2.37682614833697 2.34235407288434 3.04223453355012 2.25823063277717 1.87610270422081 0.185771754581031 0.192221201778101 0.191439364562529 0.186242446853992 0.189009915353717 0.191704836087249 0.185771754581031 0.186995483634699 0.198048958461081 0.188784990513646 0.186320930028778 0.189100867135996 0.185771754581031 0.190724885487992 0.192750709713693 0.185771754581031 0.191276383441605 0.186499984577058 0.186690222435735 2 2 + 9767585 9768049 9767797 9766753 9768243 + gene protein_coding_gene FALSE TRUE AT2G22930.1 glycosyltransferase family protein similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G53990.1); similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G64920.1); similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G09500.2); similar to glucosyltransferase [Ipomoea purpurea] (GB:BAD95882.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.151067643427321 1.62340606363292 0.133090825952218 1 0.574989959296337 4.75431517225027 0.151067643427321 0.0754613918037317
AT2G22310_at 6.5337487902444 6.84200271642189 6.3145034057964 6.81079271857237 7.2133860575861 6.7002301265392 6.68644898264232 6.5780847908398 6.78359631566175 6.70200776989503 6.71457016911008 6.414392359053 6.30585100786793 6.69944173395887 5.5056063717641 6.19453115058977 6.44596029500079 6.11235622218868 6.83612721095772 0.221348420105344 0.220640023828376 0.225671064663577 0.227912259938399 0.22603236820674 0.243396708831673 0.225385213255892 0.228163533208922 0.22948633761586 0.221225663574981 0.219092398620309 0.219092398620309 0.220270251719917 0.220777351351120 0.224535015810867 0.219092398620309 0.232105237501373 0.228424311628206 0.219330481221766 2 2 - 9483878 9484404 9484088.455 9483658 9486039 - gene protein_coding_gene FALSE TRUE AT2G22310.1 ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease Encodes a ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (AtUBP4) (UBP4) [Arabidopsis Thaliana] (GB:Q8LAM0;GB:O24455); similar to ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT4G39910.1); similar to Os04g0452400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052951.1); similar to ubiquitin specific protease 46 [Mus musculus] (GB:NP_808229.1); similar to PREDICTED: similar to ubiquitin specific protease 46 [Rattus norve (GB:XP_214034.4); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.18758250569672 -1.62337208300687 0.133098131615832 1 0.574945757499615 13.2463992465119 -0.18758250569672 0.135866689268328
AT1G76770_at 1.81130800154331 1.2445363874885 1.86100997989344 1.84059882088404 1.54504970035924 1.83562163069331 1.08953585214758 1.61480299658823 2.04243760138782 1.78837220224691 2.01371911540144 1.43770382072383 1.88768809563141 1.86725251399663 1.81548968147685 1.7799839956347 1.87378875053923 2.11433172538133 1.55156101905977 0.198056495974695 0.198878013711847 0.202138167325142 0.195529876886794 0.195529876886794 0.200044952983395 0.195529876886794 0.195529876886794 0.211508557073618 0.196605392723885 0.21281764125302 0.195529876886794 0.195692149822191 0.198054169292005 0.197824755459256 0.196215926316676 0.201829150683655 0.201709053004495 0.205624247707065 1 1 + 28818822 28819237 28819050.545 28818463 28819272 + gene protein_coding_gene FALSE TRUE AT1G76770.1 heat shock protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76780.1); similar to Heat shock protein Hsp20 [Medicago truncatula] (GB:ABE83158.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.192572664149475 1.62324338952752 0.133125803277838 1 0.574778358613174 3.42674208115621 0.192572664149475 0.142912591865158
AT3G15650_at 2.40352308192295 2.44497983745781 2.23679593776337 2.39288215680254 1.81613191532047 1.69271791113850 2.85571990074479 2.83349244165505 1.70014077101146 2.40962176377632 2.74543447210402 2.06644291290271 2.94914845723021 2.15201075414535 2.82857341192996 3.45143933860856 2.99337096412634 3.45806103792381 1.76625607339484 0.198499639201444 0.195507370887989 0.198412572928136 0.198758248529768 0.195507370887989 0.203613599231689 0.203612527358386 0.204023746590078 0.199780969940815 0.21050694308208 0.200718187322054 0.200620363568411 0.197544950867815 0.204227960668153 0.21002605275333 0.206092445674342 0.207081324734966 0.201067681449378 0.197222566891241 3 0|3 /|+ 5306953 5307735 5307369.4 5305933 5307975 + gene protein_coding_gene FALSE TRUE AT3G15650.1 phospholipase/carboxylesterase family protein similar to phospholipase/carboxylesterase family protein [Arabidopsis thaliana] (TAIR:AT1G52700.1); similar to putative lysophospholipase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAB62566.1); contains InterPro domain Phospholipase/Carboxylesterase; (InterPro:IPR003140) 0.136045232019116 1.62299973772203 0.133178207189431 1 0.574461447854994 4.72914691685847 0.136045232019116 0.0353839225081171
AT2G36440_at 1.90098368023556 1.53346660234352 1.97068294744134 1.82403059309793 1.52925511556207 1.54508911874624 1.78461752583870 2.01119139520956 2.11879378160342 2.07409839334305 1.7641466628483 1.68745041895300 1.86521341964448 1.98582916193366 1.99577343720907 1.77635371634225 1.89876333592526 2.00337345007926 2.06882165397146 0.190053220929261 0.184901148433457 0.185591606728851 0.189535482920805 0.185300246030689 0.187756453593868 0.188734501647823 0.183819461560444 0.190801626053731 0.186951799647664 0.192157055559237 0.183819461560444 0.198474021118848 0.187616143385115 0.185693098371137 0.183819461560444 0.188536612784533 0.186809711005876 0.189802049280195 2 2 + 15299729 15299901 15299817.545 15299727 15299951 + gene protein_coding_gene FALSE TRUE AT2G36440.1 unknown protein -0.152712674900337 -1.62260456975909 0.133263237490551 1 0.573947522711877 3.74209006897914 -0.152712674900337 0.0789558275673058
AT3G06310_at 7.18847853265005 7.2761699127128 7.08007898253033 6.85002814952434 6.72988567748314 6.74402234831665 6.95371979790702 7.0912615668869 6.28188649100295 6.17759102035166 6.6461323994432 7.19001254278993 6.45142343271493 7.05126986713881 7.13230916991543 7.06814688477537 6.47276251075566 6.42657828178303 6.28588912940553 0.164620482348261 0.163720303526277 0.163271314844624 0.160086676815585 0.160001729174982 0.164864083759045 0.160001729174982 0.166217672855489 0.164639031920298 0.163244587827496 0.168481269493751 0.160638464453050 0.162584892777088 0.171873720480391 0.167309735987937 0.162668139416359 0.168126996072565 0.165775973632755 0.160001729174982 3 3|0 -|/ 1913304 1914149 1913774.9 1912974 1914398 - gene protein_coding_gene FALSE TRUE AT3G06310.1 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein similar to NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein [Arabidopsis thaliana] (TAIR:AT5G18800.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96885.1); contains InterPro domain CHCH; (InterPro:IPR010625) 0.139985088084460 1.62249234964987 0.133287393202973 1 0.57380159098421 13.5158480875437 0.139985088084460 0.0488648113094664
AT3G19470_at 2.34501618341469 1.87036161967597 1.98361189690551 1.98619206463004 2.17887660863420 2.17037484350162 2.17022105281968 1.66675871472948 2.35854165530122 2.20035313847471 2.03340842281535 2.44618499783052 2.56674676979675 2.36346723925991 3.01783939076616 3.15015342790989 2.74945902579614 1.83075811003795 2.14145190644952 0.176422799269339 0.182911424037466 0.17803773549418 0.178633145788628 0.176494544723944 0.182073890919280 0.179743095056028 0.179937443445747 0.190353192132113 0.176825925872855 0.177024403486312 0.174705750875899 0.176732968833049 0.174831729327908 0.182170221291907 0.176502942286668 0.181436412304669 0.181379489422485 0.179188890414849 3 3 + 6750344 6750855 6750549.818 6749491 6751023 + gene protein_coding_gene FALSE TRUE AT3G19470.1|AT3G19470.2 F-box family protein similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G22770.1); similar to F-box protein interaction domain [Medicago truncatula] (GB:ABE93710.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.176488866854660 1.62211455979540 0.133368742019442 1 0.573310353439363 4.42302715958977 0.176488866854660 0.119752104053961
AT2G17560_at 8.02624825262997 8.25412648910269 7.86880501836465 7.69999538987538 8.59614809990643 8.06544095487264 8.64258001496478 8.20265784254095 7.36787868367346 6.57963428964006 7.63939816133797 7.8968215316695 7.66227540614717 7.94587413730453 7.43421540216538 7.44816908124468 6.84964380394275 7.13995956356694 6.79136376315607 0.191221536890779 0.185736540947859 0.194030002362264 0.190164072646362 0.190203357488542 0.184829405709069 0.195261910324662 0.187652471698319 0.203084742255788 0.209184142097870 0.185876017517377 0.185883853567953 0.192791891198676 0.185688156673044 0.194627046575475 0.186263880814032 0.198594971971781 0.189240845952826 0.192753552686650 2 2|0 -|/ 7649709 7650522 7650157.25 7649247 7650749 - gene protein_coding_gene FALSE TRUE AT2G17560.1|AT2G17560.2|AT2G17560.3 HMGB4 (HIGH MOBILITY GROUP B 4); transcription factor|HMGB4 (HIGH MOBILITY GROUP B 4) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB5 (HIGH MOBILITY GROUP B 5), transcription factor [Arabidopsis thaliana] (TAIR:AT4G35570.1); similar to high mobility group protein [Cucumis sativus] (GB:AAY26151.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.182639969855505 1.62176378653017 0.133444312655945 1 0.572854304385707 15.3770020318216 0.182639969855505 0.128993276315097
AT2G46640_at 3.30307352842844 3.51273338968196 2.0120472379359 1.79104432521008 1.61949308498444 2.11672513039109 2.01716368971766 2.28893209082261 1.97785038044238 1.93385730286823 3.50349078201173 3.79464028460420 2.69237418542879 3.56099479561986 3.25649435635749 3.39853075974449 3.37678779702224 3.35903085567265 2.47876574039534 0.23920481201074 0.238028880582982 0.245519884063076 0.233090803023177 0.238763598171862 0.235460615066158 0.240699143323002 0.231233217966687 0.244832799938354 0.234089189084366 0.232925341974792 0.234826621839306 0.238752841467524 0.233829479979505 0.248775012978796 0.230718113088362 0.231579316327106 0.233587782276024 0.233924856423531 2 2 + 19157032 19157978 19157402.273 19155800 19158065 + gene protein_coding_gene FALSE TRUE AT2G46640.1|AT2G46640.2 unknown protein 0.170993469561705 1.62133815340887 0.133536061889085 1 0.572301004500121 5.08162695212635 0.170993469561705 0.111334461503701
AT2G26830_at 5.48548799590526 6.43371192329494 6.46869487686622 5.93354136878759 7.05887850131073 6.22939929137299 6.76047649050979 6.62413413089539 5.72760390140648 6.02811746359746 6.76096363935 6.37429772599882 6.33504121221765 6.24166462976425 6.14166652637604 6.71858410638803 6.18551520716718 5.92598559576216 5.93077613603371 0.273448617008691 0.259196681695197 0.26052476405887 0.254777621974901 0.263494448120203 0.253366502854171 0.262864283391271 0.267679306301273 0.276382061946666 0.262110532399972 0.263224612646718 0.255630217698965 0.255766385851366 0.274119704279058 0.258750751001203 0.256252007637723 0.265245743971490 0.260053225462336 0.263270853293765 2 0|2 /|+ 11453026 11453997 11453621.143 11450639 11454186 + gene protein_coding_gene FALSE TRUE AT2G26830.1 EMB1187 (EMBRYO DEFECTIVE 1187); kinase/ phosphotransferase, alcohol group as acceptor similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to putative ethanolamine kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD36072.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline/ethanolamine kinase; (InterPro:IPR002573) 0.268320768899254 1.62107589880468 0.133592621073115 1 0.571960129475761 12.4897725710631 0.268320768899254 0.238045662980529
AT2G03460_at 2.20149116246442 2.21784777174993 2.31091661232831 2.13669143616176 1.6762064368251 1.83789087480862 1.82278501722130 2.07608537738187 2.05984728718128 2.11123165782119 1.75058995682864 1.46468456293655 1.43546171767916 1.62822790715331 1.76092571551166 1.60984600415682 1.78502009190731 2.09780330339730 1.50061237009996 0.237324073833436 0.228237768881939 0.236784423721445 0.231280736347665 0.235933607923337 0.241433301674259 0.235622948535107 0.234048632417134 0.230657880420545 0.233096778227352 0.238461181069535 0.233128094105650 0.232947101038757 0.2293457011461 0.231761177480383 0.231230300745530 0.228803259030475 0.241578324667255 0.233602402775077 2 2 - 1043726 1044278 1044028.273 1043618 1044764 - gene protein_coding_gene FALSE TRUE AT2G03460.1 similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.144059928213951 -1.62107048372656 0.133593789139723 1 0.571953091364691 3.82605617569124 -0.144059928213951 0.060178469968647
AT2G42840_at 2.22821640959236 2.03063777143808 1.58949905972990 1.70922181415517 1.62197683505148 2.04778592233251 1.37660299628963 1.81933012753305 1.10767326021183 1.53093490796224 1.84378036622210 2.51866195592067 1.8951761365278 1.42199937099912 1.98596694962243 2.40523339334907 2.02004132132397 1.88464895151876 1.95322826436494 0.245078098038191 0.241016978952433 0.243761784154726 0.239934501380073 0.235998132904593 0.241705076400330 0.241616531214313 0.244198141877292 0.247587196783023 0.242636776438962 0.253090566704239 0.240637011013373 0.236685974498465 0.251788522286491 0.238762506086972 0.238328066927685 0.247255220174067 0.244216091946421 0.235998132904593 2 2 - 17833430 17833998 17833681.455 17833193 17834613 - gene protein_coding_gene FALSE TRUE AT2G42840.1 PDF1 (PROTODERMAL FACTOR 1) Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G18670.1); similar to Os01g0726700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044120.1); similar to meiosis 5 [Triticum aestivum] (GB:AAV58857.1); contains domain PRICHEXTENSN (PR01217) 0.172375246554904 1.62102264405491 0.133604108851318 1 0.57189091354812 3.56668421694785 0.172375246554904 0.113570747028104
AT1G18610_at 2.24239270161942 1.94704624622681 2.29867611736087 2.18111775850513 2.15227689684463 2.21414081943369 2.54156577386708 2.25480310623578 2.4660425902094 2.53322833325528 2.92801924892565 2.77499913890797 2.34844659556811 2.77545270534008 2.99950246139492 2.86540332422183 3.19906706517905 2.43350165553666 2.36437290539659 0.191140025863670 0.199246801937271 0.194537193726053 0.196955195171868 0.193233544967062 0.199721703216074 0.191943184452667 0.196321234793885 0.205277364124288 0.191277371141043 0.191645396347567 0.191807357297946 0.199107929200613 0.190326327498346 0.199196427668532 0.199427838881448 0.194154750836849 0.208321379496662 0.196016154869585 1 1|0 +|/ 6408121 6408732 6408413 6405771 6408823 + gene protein_coding_gene FALSE TRUE AT1G18610.1 kelch repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74150.1); similar to hypothetical protein DDBDRAFT_0191741 [Dictyostelium discoideum AX4] (GB:XP_629287.1); similar to Os01g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042819.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.150551011239666 1.62098424610190 0.133612392356359 1 0.571841008016162 4.8515509111807 0.150551011239666 0.074856788487145
AT1G15130_at 8.50676679057474 8.5588621423446 8.7784071889841 8.70717683041855 8.77813366425926 8.43163954194738 8.09700506321127 8.07840918408021 8.29536910329478 8.14136169951933 8.30386610001173 8.06788459864732 8.11848042706394 8.499365448851 7.98131761346204 8.26165120482437 7.86168526918836 8.30444911119017 8.31051309320188 0.110782935902886 0.110765391260171 0.112425453897583 0.110058896010248 0.114715821895236 0.110126869144451 0.112967575205566 0.112437044472668 0.120582712411676 0.109217460663460 0.110370599693975 0.112296791541697 0.108742842248533 0.110984314086420 0.113728957743249 0.110475315621997 0.115267381587739 0.119854686776971 0.108294457556376 1 1|0 -|/ 5206229 5206851 5206452.9 5205997 5209910 - gene protein_coding_gene FALSE TRUE AT1G15130.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to Helix-turn-helix, Fis-type; BRO1 [Medicago truncatula] (GB:ABE92234.1); similar to ALG2-interacting protein X [Nicotiana tabacum] (GB:BAD15108.1); similar to Os10g0495300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064950.1); contains InterPro domain BRO1; (InterPro:IPR004328); contains InterPro domain t-snare; (InterPro:IPR010989) 0.144667342166244 1.61972227526099 0.133884886991644 1 0.570201213451266 16.7040094358909 0.144667342166244 0.0619602577915685
AT2G24250_at 3.65721482348839 4.10939313429212 3.57083768633835 4.03866503084642 4.01940156408568 4.20020117656458 3.22305250099451 3.57130925841612 3.28806391431373 3.48336787039222 3.36109499027763 3.3343007354706 3.77812837366193 3.35594404624872 3.22571279120663 3.69387685854614 3.61440658817376 3.45829307852752 3.50820352676901 0.211755587778267 0.208639291690631 0.207154357638655 0.207949056773670 0.206113466429225 0.208927370122085 0.204419093427509 0.209066056655717 0.208008103460265 0.206337534646426 0.206112595851538 0.207220833177244 0.208019295122596 0.208555015710357 0.212018894971165 0.209145678163518 0.214137902939064 0.215096166702496 0.207712037903622 2 2 - 10320556 10321073 10320816.727 10320366 10322000 - gene protein_coding_gene FALSE TRUE AT2G24250.1|AT2G24250.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G64840.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE93700.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.184104257050052 1.61958910672319 0.133913670383910 1 0.570028218329030 7.25089179017282 0.184104257050052 0.131487261313845
AT1G19040_at 0.481747639928303 0.374504496865595 0.255886611457799 0.251542128568378 -0.0107243116382355 0.248011372137666 0.300981975516 0.124907571175967 0.454514551613358 0.602795911511446 0.438088337895265 0.379601898866417 -0.0306102737663018 0.582073749353885 0.419873117084934 0.0360398288759423 0.426546948900968 0.0673093890439654 0.265736627222974 0.205668093986611 0.208466386014336 0.213945733202007 0.215825550155166 0.206638419178237 0.206074055679321 0.205668093986611 0.208510453510265 0.216345504133159 0.217001125402521 0.210874826362145 0.216297856188712 0.212319255390365 0.209688145141973 0.208430056343564 0.20977052948094 0.209956650840191 0.221035577484778 0.210526266579136 1 1 + 6576892 6577352 6577136.636 6576886 6577404 + gene protein_coding_gene FALSE TRUE AT1G19040.1 transcription factor similar to ANAC006 (Arabidopsis NAC domain containing protein 6), transcription factor [Arabidopsis thaliana] (TAIR:AT1G03490.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.142753396495386 -1.61935385435549 0.133964531787959 1 0.569722629329016 0.618797721158672 -0.142753396495386 0.057256336898303
AT4G04610_at 9.9928008730815 10.5558797044304 10.1726228599789 10.3336663053338 10.3366466395375 9.88044526350817 11.1260252211409 11.1926252354554 9.04510772393527 10.6082741200673 10.2157190822733 9.67233058088488 10.0483730462690 10.2741744855759 8.95220426349482 9.85469993690677 10.2837267228934 10.0933282969888 9.60560893717895 0.112771413757453 0.111010147974004 0.120161059977471 0.112767016149608 0.111794098684220 0.115597064961948 0.112390094594744 0.112363562650582 0.122641387525005 0.110678666120468 0.111282736729006 0.114202425823663 0.112810326374315 0.114500658126756 0.122904976999434 0.110180423875001 0.110365135407415 0.112642501032096 0.120253963598395 4 4 + 2326149 2326675 2326429.727 2325001 2327011 + gene protein_coding_gene FALSE TRUE AT4G04610.1 APR1 (PAPS REDUCTASE HOMOLOG 19) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. Identical to 5'-adenylylsulfate reductase 1, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 1) (APS sulfotransferase 1) (Thioredoxin-independent APS reductase 1) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 19) (PAPS reductase homolog 19) (Prh-19) (APR1) [Arabidopsis Thaliana] (GB:P92979;GB:O48886;GB:Q39248); similar to APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT1G62180.1); similar to APR3 (APS REDUCTASE 3) [Arabidopsis thaliana] (TAIR:AT4G21990.1); similar to APS reductase [Brassica juncea] (GB:CAA04611.1); similar to adenosine 5'-phosphosulfate reductase [Glycine max] (GB:AAL66290.1); similar to 3'-phosphoadenosine 5'-phosphosulfate reductase (GB:AAC49573.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-independent 5' (InterPro:IPR004508) -0.182332433293543 -1.61907428231880 0.134024997247067 1 0.569359503124824 20.287497252294 -0.182332433293543 0.128986455790622
AT2G33100_at 1.90361422011681 1.82648766246102 2.1717696495843 2.20492029831109 1.39476371347622 1.89355846403918 1.88456988443535 1.84582339359398 2.63373047410894 1.78594141184856 1.72993295111491 1.52118073920200 1.95424450719507 1.36703483566943 1.70860532246703 1.53425661419549 2.06282526915614 2.13568569011188 1.93066986137925 0.181050310313797 0.180682830624005 0.184410086987202 0.193541116802062 0.190195867559930 0.180682830624005 0.185154402502142 0.186773916814655 0.186089452847799 0.187304702888541 0.189708249036374 0.191383762807262 0.181028122393528 0.180682830624005 0.182763028881404 0.181217392778808 0.189944279444488 0.184364990288292 0.180682830624005 2 2 - 14043601 14044142 14043857.455 14043396 14047121 - gene protein_coding_gene FALSE TRUE AT2G33100.1 ATCSLD1 (Cellulose synthase-like D1); cellulose synthase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLD4 (Cellulose synthase-like D4), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38190.1); similar to CSLD3 (CELLULOSE SYNTHASE-LIKE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G03050.1); similar to ATCSLD2 (Cellulose synthase-like D2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16910.1); similar to cellulose synthase-like protein D4 [Populus tremuloides] (GB:AAO03579.1); similar to putative cellulose synthase [Oryza sativa (japonica cultivar-group)] (GB:AAL58185.1); similar to cellulose synthase D-like protein [Nicotiana alata] (GB:AAK49455.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150); contains InterPro domain ATP dependent DNA ligase, C-terminal; (InterPro:IPR012309) -0.156965300052840 -1.61903912872896 0.134032601922256 1 0.569313845935735 3.82493907254453 -0.156965300052840 0.0877892110162411
AT1G32160_at 10.2963664451056 10.5634128468716 10.3425104736622 10.4315972456778 10.387560942074 10.3289329177062 10.6879203330757 10.7821940787801 10.8219769398889 10.6796282101178 10.8078342016349 10.6038792948223 10.6240521880083 10.8122265916653 10.4651815343109 10.9288350949832 10.6845863296090 10.5597016247971 10.7715824645699 0.074102001255531 0.0709148055296253 0.0799986965944046 0.0707359065925638 0.0724427465230075 0.0768813680234365 0.074499770124612 0.070477033496251 0.0808606971167681 0.0719614749217244 0.0701326494395511 0.070165336211982 0.070146938189905 0.0737433163746241 0.072421965186563 0.0704929637650373 0.0722114926541273 0.0725116745774345 0.0705168963145829 1 1 + 11569643 11570196 11569977.455 11568645 11570367 + gene protein_coding_gene FALSE TRUE AT1G32160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17800.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38836.1); similar to Os03g0717900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051084.1); similar to Os04g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053731.1); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) -0.140882564279083 -1.61877790226719 0.134089124224464 1 0.568974585120218 21.1993200665380 -0.140882564279083 0.0523687025641553
AT1G21440_at 10.0998084006763 10.1676576317332 9.68022872635523 9.5924741873149 10.2294931671319 9.9754597403019 10.1727825259277 10.1420506111905 9.00395594974818 10.5690905056312 10.5045753806997 10.1928445286875 10.047342645412 10.3454514309733 9.77607789583383 10.2098382766458 10.3872502371968 10.758486204742 9.59519730403623 0.105475258796213 0.101742580710365 0.108805269927897 0.108534395718608 0.104094725101157 0.107641736739071 0.105057362498577 0.103272041267143 0.123436101380846 0.103038511970045 0.101581635547436 0.101581635547436 0.104912162908038 0.108051421341313 0.109115472230161 0.103775992452988 0.102394235670365 0.107749463745043 0.112612295699598 1 1 - 7502341 7502842 7502663.4 7502148 7504164 - gene protein_coding_gene FALSE TRUE AT1G21440.1 mutase family protein similar to mutase family protein [Arabidopsis thaliana] (TAIR:AT1G77060.1); similar to Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96021.1); contains InterPro domain Isocitrate lyase and phosphorylmutase; (InterPro:IPR000918); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.139412284056357 1.61818708883809 0.134217037785460 1 0.568207398760941 20.0077349962435 0.139412284056357 0.0482638908325877
AT2G34970_at 5.5542935382169 6.05147787532443 5.16817395924159 5.6293812506636 5.85580654395963 5.24647297708108 6.4200565990023 6.41230240137487 5.60997425124712 5.75706597211249 5.72368182822032 6.03137538691827 5.8005979075854 5.52832596565902 5.96102967630426 5.61143626814401 5.46373342992839 5.83825591332697 5.18076941486534 0.241363427138202 0.245110442317112 0.252804411975628 0.251044899926601 0.240133534350626 0.249077729389048 0.245793063740905 0.245226052617376 0.240159560848971 0.243696243577396 0.244737584330909 0.246813746836745 0.255272786585027 0.253261782829111 0.244082061033641 0.247221172849129 0.247257723663919 0.235855350079092 0.242148903123033 2 2 + 14755096 14755528 14755310.455 14753386 14755860 + gene protein_coding_gene FALSE TRUE AT2G34970.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G02270.1); similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G18300.1); similar to hypothetical protein DDBDRAFT_0185388 [Dictyostelium discoideum AX4] (GB:XP_639192.1); similar to Os02g0812400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048478.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.202852959903652 -1.61804391645579 0.134248051406283 1 0.568021510113905 11.4226161896510 -0.202852959903652 0.157779162909251
AT3G55400_at 8.23129981943116 8.3547219572885 8.28350333702211 8.1655301392392 8.5223917649233 8.1084533405432 8.67807153444587 7.99921129773666 7.03037163543926 7.66926300617 7.34265211456411 8.25906396123883 7.4545803324431 7.83133531080051 8.1832105099256 8.0180643804807 8.06311319798094 7.94640148189817 7.6823814832202 0.181931771290597 0.178734095873760 0.18048304845371 0.183688441966291 0.180754275515707 0.185729593134013 0.181537757332298 0.177324773134070 0.186966319159498 0.179586328345257 0.185933894269993 0.181445693136368 0.182845203420758 0.183061420058024 0.190248958830061 0.180107685839732 0.181746307911964 0.177324773134070 0.183991698319121 3 3|0 -|/ 20546903 20547638 20547314.4 20546608 20550044 - gene protein_coding_gene FALSE TRUE AT3G55400.1|AT3G55400.2 OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase|OVA1 (OVULE ABORTION 1) similar to methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative [Arabidopsis thaliana] (TAIR:AT4G13780.1); similar to Os03g0209600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049336.1); similar to Putative methionyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:AAN77311.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Methionyl-tRNA synthetase, class Ia; (InterPro:IPR002304) 0.190387056381539 1.61793264646696 0.134272158782720 1 0.567877048677875 15.9668852502169 0.190387056381539 0.140733659929097
AT3G20460_at 1.70391215965118 1.73908661776568 1.44041586647906 1.93510353573658 1.52768351193076 1.74086247779895 1.56903413418989 2.07631719975361 2.01222241811679 2.50495588563336 2.09733476531828 1.67492202979425 2.07058311004978 2.01657521002223 1.82887823780253 2.01259153607185 2.34775037548356 2.24898063213393 2.35114588056553 0.189918654753322 0.200587672630256 0.197792326529582 0.189918654753322 0.191871314000709 0.189918654753322 0.190083656888108 0.200493054210791 0.193470833854658 0.202260591208298 0.195134813981557 0.193041826162498 0.189918654753322 0.195387227944118 0.189937896811555 0.193118439796170 0.199117590845178 0.190559946053287 0.202870915404449 3 3|0 +|/ 7137606 7139447 7138633.556 7135056 7139478 + gene protein_coding_gene FALSE TRUE AT3G20460.1 sugar transporter, putative Identical to Putative sugar transporter ERD6-like 13 [Arabidopsis Thaliana] (GB:Q9LTP6); similar to carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G05165.3); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.181655293770546 -1.61785303667115 0.134289409114009 1 0.567773695082673 3.87987362884144 -0.181655293770546 0.128193039822473
AT2G25530_at 1.51407678793891 2.09462187642835 1.81454251861301 1.89898650652711 1.22507811782059 1.53284455251895 2.46864034697217 2.70605304018172 1.32939735135646 2.10274748236466 2.12030376872263 2.00430455783593 1.80454056212175 1.56744369498749 1.93722725013523 1.76625772888863 2.41486225069626 2.07514085605499 1.78168531495823 0.223755469625815 0.220120861442828 0.225183567353326 0.218705945126352 0.218029271967375 0.223189957971314 0.218496324271144 0.233264426591185 0.236267965517814 0.219425086695473 0.218217035608602 0.218929768190675 0.223656260689779 0.218139979980298 0.2194895018244 0.219902143706165 0.229236134163430 0.224446653419411 0.216676036355461 2 2|0 +|/ 10872457 10873631 10873049.125 10870137 10873835 + gene protein_coding_gene FALSE TRUE AT2G25530.1 AFG1-like ATPase family protein similar to ATPase [Arabidopsis thaliana] (TAIR:AT4G28070.2); similar to putative AFG1-like ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAO20064.1); similar to Os03g0851900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051919.1); similar to AAA ATPase; AFG1-like ATPase [Medicago truncatula] (GB:ABE91569.1); contains InterPro domain AFG1-like ATPase; (InterPro:IPR005654) -0.177334194111561 -1.61759632385771 0.134345048518473 1 0.56744043712072 3.75645720166184 -0.177334194111561 0.121785288018033
AT3G26990_at 4.17934474462117 4.24400434465663 3.37016832307326 3.83226559735319 3.71994328148805 4.31233149036759 3.44376157593722 4.34775128507753 3.92334427965068 3.90001910072730 3.46432671281731 3.66270468122713 4.38880645450919 4.00158176508741 3.81491140359243 3.51410695704346 3.71197501761814 3.57696910563714 4.17592162348506 0.250830072205468 0.25044214423789 0.257337910514356 0.259125973000438 0.259390137013741 0.263618238855996 0.255126607687044 0.252085710842463 0.257831000262835 0.251472277628106 0.251617222824165 0.253105443190781 0.264769143153229 0.254747889300713 0.262008835181725 0.25044214423789 0.264253023533674 0.251446963343499 0.250794046009246 3 3 - 9949674 9950224 9949964 9949460 9953278 - gene protein_coding_gene FALSE TRUE AT3G26990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10060.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91308.2); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain Protein of unknown function DUF618; (InterPro:IPR006903) -0.238938610132715 -1.61744592582212 0.134377654926859 1 0.56724520846583 7.81453854539476 -0.238938610132715 0.203722603595148
AT1G33000_at 1.98654820907467 1.65685521841365 1.8311591295718 1.94029706240771 1.38999868543803 2.08106686058735 1.72133928280007 1.42544888709017 2.95236781275261 2.40629182525072 2.0666757703123 1.96158413539428 2.01309486758770 2.24085021019963 2.06999691010690 1.82937343937663 2.2378258385296 2.37213372830557 2.43039804154793 0.273829823091174 0.267094522472231 0.289347584808384 0.295542700825238 0.273817241381376 0.276738725886699 0.264735725696746 0.280215798903017 0.283411958227386 0.281176269794955 0.282609035830479 0.273211039069057 0.26898569053389 0.264735725696746 0.283339403717499 0.279332936207944 0.266570912900610 0.264735725696746 0.280013277508420 1 1 + 11958000 11958118 11958049.5 11957948 11958142 + gene protein_coding_gene FALSE TRUE AT1G33000.1 similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G08860.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.192164081108628 -1.61742846194428 0.134381441561315 1 0.567222539638452 4.10173637808643 -0.192164081108628 0.143305030630155
AT4G11400_at 2.26215019421528 1.87224407961450 2.05396257968595 1.88766362120956 1.91359009029633 1.94974710257999 1.94993334085567 1.93578524712538 2.6164186762059 2.15512851221973 1.91702464607604 2.20825638339333 2.07745772204981 1.77066787948427 2.42941217214466 1.96420077513279 2.02121380527926 1.98304845612979 2.10410572139861 0.192975671397543 0.192114091086546 0.190672321649778 0.194458502519712 0.19551741296878 0.193308398838202 0.190672321649778 0.196413397062373 0.198491340178856 0.193749870377007 0.206249721672889 0.192196959067187 0.203854538531141 0.194693259283639 0.200026095118577 0.193595528924467 0.197815719017475 0.195063351594106 0.19479748008673 4 4 + 6939936 6940467 6940225.273 6938712 6940534 + gene protein_coding_gene FALSE TRUE AT4G11400.1 ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46040.1); similar to ELM2; AT-rich interaction re (GB:ABD28708.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain ELM2; (InterPro:IPR000949) -0.149630720161628 -1.61719627383114 0.134431795084605 1 0.566921163423411 4.14728179856583 -0.149630720161628 0.0736630954904661
AT1G13540_at 1.04325166732196 1.2280154963168 1.21976430609403 1.50831599408438 1.17269631045376 1.29338181411255 0.87072504719023 1.03168975139820 1.39332508221511 1.25896384484020 1.09975553125569 0.93244790264472 1.37645723543806 1.61039294273929 1.62659081265734 1.31711762833769 1.20778050344201 1.40210464232184 1.19360921956604 0.165805916375897 0.167447403827203 0.165805916375897 0.167672508356535 0.17296129542551 0.171296997019839 0.165805916375897 0.168180347952633 0.176174406134123 0.169766569660858 0.168653244977262 0.173980164898343 0.173089626033233 0.170521367486020 0.169525314561404 0.170789766628228 0.171783609424168 0.167687821306781 0.177399382339031 1 1 - 4635483 4636008 4635775.273 4635460 4636802 - gene protein_coding_gene FALSE TRUE AT1G13540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13510.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99699.1); contains InterPro domain Protein of unknown function DUF1262; (InterPro:IPR010683) 0.147366983305091 1.61715821062196 0.134440051258449 1 0.56687176041307 2.47275352273567 0.147366983305091 0.068760516682792
AT3G54540_at 9.31034963239719 9.54796166669333 9.24345819908436 9.24896409264695 9.65438055738696 9.43138450009004 9.45027218659807 9.51325820317115 9.21161453981229 8.98650990399765 8.87719366904437 8.9664730949272 8.85320313029642 8.93251454648176 8.87779641992936 8.91651736435501 8.82659609619876 8.692456795907 9.07832194731947 0.104812302814819 0.107194675105197 0.104863598916075 0.110289449723692 0.107190580313530 0.104145793883403 0.105385740137970 0.107029441811046 0.110221832554179 0.112697264167183 0.107218491022076 0.103704203770684 0.107438987915455 0.103704203770684 0.111753529893115 0.103704203770684 0.114099672437461 0.107880011070731 0.105679579161698 3 3 + 20202944 20203467 20203201.727 20200783 20203770 + gene protein_coding_gene FALSE TRUE AT3G54540.1 ATGCN4 (Arabidopsis thaliana general control non-repressible 4) member of GCN subfamily similar to ATGCN3 (Arabidopsis thaliana general control non-repressible 3) [Arabidopsis thaliana] (TAIR:AT1G64550.1); similar to Os03g0441500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050461.1); similar to ABC transporter [Populus tremula x Populus tremuloides] (GB:CAE47098.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.142609246156757 -1.61689659333207 0.134496809967814 1 0.566532220226169 18.4049999731013 -0.142609246156757 0.0574437937687945
AT3G45720_at 1.56109285801338 1.26894928829169 1.39967221678334 0.940484058318232 1.09601480239918 0.853639655792186 1.18916327887894 1.21316292805356 1.74733331364368 0.940913674669365 1.38144841208652 0.853740691287568 1.73197764331645 1.28755363568165 1.61175971251979 1.16520816324354 1.16377054058849 1.38111726855847 1.56407714271529 0.238637676301991 0.238637676301991 0.244449824719974 0.245847606241560 0.24533432134453 0.243707900481286 0.245216664579578 0.238637676301991 0.25556635010756 0.245529235438574 0.238637676301991 0.240898757232942 0.238637676301991 0.246458497997710 0.243203602916380 0.241817131080978 0.245239161519477 0.259799868237987 0.238637676301991 3 3 + 16797369 16797854 16797597.455 16796031 16797930 + gene protein_coding_gene FALSE TRUE AT3G45720.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45680.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45700.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45710.1); similar to Major Facilitator Superfamily protein [Solanum demissum] (GB:AAT39312.2); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.165504386792647 -1.61669054623988 0.134541527426704 1 0.566264824225391 2.56002907852619 -0.165504386792647 0.103185187463514
AT1G16330_at 2.18059405739495 2.09519060845017 1.74975778840633 2.14135482943081 1.57338168563259 2.21459076750841 2.05656373346664 1.95500277055129 2.56733107966238 2.91115013128 2.27807789407665 2.30433461971945 2.65505613696943 2.13748489193507 2.64414785395331 2.80429981783508 2.4456434267854 2.57762118818262 2.61243285048812 0.216952713509578 0.215381346194202 0.212033488947283 0.212678322781832 0.223697821386266 0.214968018471013 0.220742336101974 0.213713525615377 0.222216750671792 0.210481440221254 0.213248912415873 0.218057108762625 0.211695319570226 0.217996925193114 0.224105366827449 0.215586449262881 0.212546672062324 0.213081565233761 0.220937299033383 1 1|0 -|/ 5582385 5583313 5582764.4 5582381 5584451 - gene protein_coding_gene FALSE TRUE AT1G16330.1 CYCB3;1 (CYCLIN B3;1); cyclin-dependent protein kinase core cell cycle genes similar to CYCB2,3 (CYCLIN B2,3), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G20610.1); similar to cyclin [Pisum sativum] (GB:AAD11475.2); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.184102324924631 -1.61626591267257 0.134633725082632 1 0.565713821514364 4.58470682135129 -0.184102324924631 0.132033530663141
AT2G12610_at 0.911530518466266 0.666162524514085 0.984450694246905 0.795328858813841 0.9700371876931 0.908202643476384 1.58690131839581 0.94536829937175 1.70369607551399 1.31798273291736 1.19035932391296 1.09920833678702 1.37197942809577 1.19502395037622 0.967567039229278 1.19310629002225 1.21452153806973 1.63257840192643 1.40907804017770 0.197489241275365 0.197830622899305 0.199320536994253 0.197326285753402 0.199732466478602 0.199570564990339 0.202824100705332 0.197469868887097 0.20733644001126 0.197435527523260 0.197326285753402 0.197326285753402 0.208795665686525 0.197326285753402 0.199186850451396 0.197326285753402 0.199773713069836 0.200208121435479 0.201392096494837 2 2|0 +|/ 5149952 5150549 5150244.4 5148919 5150611 + gene protein_coding_gene FALSE TRUE AT2G12610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1) -0.178430865056657 -1.61572010409171 0.134752314466529 1 0.565005705643226 2.32597874966667 -0.178430865056657 0.123750499095989
AT1G15840_at 6.1046081288112 5.90218118355489 6.1386461450874 5.85315601015676 5.31269109289172 5.73128728583751 5.58648838297227 5.92585138139993 6.83960663043563 6.67224133968109 6.54640308449549 6.16544038687738 6.07882328358236 6.32524830920479 6.37440797631518 6.51221327613578 6.3726085150075 6.48079222837982 6.21841504144994 0.183562554796587 0.186998389774848 0.179408820615545 0.18305138001758 0.178218065321291 0.180048211613018 0.178218065321291 0.188403069084437 0.180284330194864 0.19399669547081 0.183571117536225 0.178218065321291 0.188394198754963 0.187052723038500 0.182160399263293 0.181419773365521 0.186630386107165 0.184723892431733 0.178699505144917 1 0|1 /|+ 5451793 5452051 5451932.4 5451427 5452369 + gene protein_coding_gene FALSE TRUE AT1G15840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001070790.1) -0.170299670190160 -1.61558018196593 0.134782730579818 1 0.564824197118813 12.2862369361833 -0.170299670190160 0.111196381996383
ATCG00300_at 11.6842662902433 12.3132584747859 12.4774764093715 12.3073274149842 12.3694076142467 12.1057768985453 12.3875286105914 12.6806271961749 13.1974212275817 13.3500885560227 13.8559016216205 13.899307646288 13.6716001378831 13.4619317063084 13.4337037546855 13.6884105683878 13.2080618118176 13.3221806437419 13.1982052304164 0.115774438773304 0.101166279777433 0.105553664495443 0.104480949363123 0.102391161982723 0.105397194805907 0.106785773751231 0.103934922837572 0.108608775186168 0.103458989183676 0.103640974479913 0.103484023089605 0.101166279777433 0.111862092326984 0.105068398726988 0.103546750588221 0.115609672832860 0.114358011174156 0.101166279777433 C C + 35751 35915 35832.091 35751 35939 + gene protein_coding_gene FALSE TRUE ATCG00300.1 encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has been shown to be essential in the interaction between PS II and the light harvesting complex II. Identical to Photosystem II reaction center protein Z (PSII-Z) (psbZ) [Arabidopsis Thaliana] (GB:P56790); similar to Photosystem II reaction center protein Z (PSII-Z) (GB:Q32902); contains InterPro domain Photosystem II protein PsbZ; (InterPro:IPR002644) 0.183821253169689 1.61524899131547 0.134854748560671 1 0.564394609219845 25.6988130674588 0.183821253169689 0.131793344702749
AT2G04230_at 5.39124936866215 5.74144512271175 5.63112903304121 5.24493825865776 6.5984046329264 5.57290715544466 7.05605033625107 6.58291405348138 6.23529210967513 5.73652974823003 5.4797487306135 6.26613240699712 5.95357045803928 5.72408193378178 5.74659992973375 6.76791898576756 6.06560987291093 6.27564081096226 6.32765008641885 0.246274954751842 0.255626837726540 0.240143673116935 0.246842161448870 0.245607171080569 0.242617634600618 0.246947169322253 0.247968833786499 0.253091855831664 0.251566075864828 0.248217184707236 0.240143673116935 0.244797047509614 0.240143673116935 0.245424418072997 0.248131023313410 0.261519206555292 0.247566591531518 0.240143673116935 2 2|0 -|/ 1447038 1447708 1447389.875 1446861 1449097 - gene protein_coding_gene FALSE TRUE AT2G04230.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G49030.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.247990520299821 -1.61426956204371 0.135067925791354 1 0.563124488511973 12.0447481814181 -0.247990520299821 0.21526243119972
AT3G03790_at 6.96739553706181 7.48036196879124 7.2479612242298 7.1869977988842 6.89640481342264 7.17109317701932 6.78614218941042 7.46174406471275 7.57704092038749 7.44568794740914 7.09948750068301 7.16198199470794 7.39324241032365 7.4411189087297 6.89581069258342 7.08209982064703 6.96590241580397 7.15805475526773 7.48188090836412 0.181398953886897 0.174409254701657 0.177943984727971 0.175901360392124 0.169443966463982 0.176635238418756 0.179635823709885 0.182943834698129 0.179912971048490 0.170874363083916 0.177440674294326 0.170442156127708 0.169443966463982 0.172849227111067 0.183834356425063 0.172806452416165 0.191940575649089 0.175597254697974 0.169754381118714 3 3 + 967166 967818 967516 962004 968156 + gene protein_coding_gene FALSE TRUE AT3G03790.1|AT3G03790.2 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to Regulator of chromosome condensation, RCC1; Ankyrin [Medicago truncatula] (GB:ABD28429.1); similar to Os07g0165200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058967.1); similar to putative UVB-resistance protein UVR8 [Oryza sativa (japonica cultivar-group)] (GB:BAC07425.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Ankyrin; (InterPro:IPR002110)|similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G60870.1); similar to Regulator of chromosome condensation, RCC1; Ankyrin [Medicago truncatula] (GB:ABD28429.1); similar to Os07g0165200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058967.1); similar to putative UVB-resistance protein UVR8 [Oryza sativa (japonica cultivar-group)] (GB:BAC07425.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.200060483157668 -1.61425464754088 0.135071174296582 1 0.563105150883077 14.4753870488900 -0.200060483157668 0.154663116248731
AT1G77960_at 3.84430452148449 3.6513689893601 3.84729934969029 3.93377140182742 3.79765472115158 4.0773815421409 3.88014003337534 4.18251582924039 2.82297009532496 2.95713741409851 3.27499894514537 3.09344639619845 2.82223325662276 3.01187268335058 3.34336143885518 3.00399547551416 2.67102147880809 3.77583996004336 2.75208991563356 0.195953399181888 0.197789271635467 0.192955202391149 0.194678635589858 0.197686417682076 0.196998611080430 0.194914602871293 0.202667239543293 0.191470609410459 0.189960168104482 0.194672179785274 0.19149673928686 0.194577793665600 0.192604867092776 0.192242888138602 0.193565543424651 0.198067286641878 0.190090759160916 0.193975294569855 1 1|0 -|/ 29315991 29317841 29317013.733 29315359 29317867 - gene protein_coding_gene FALSE TRUE AT1G77960.1 similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09620.1); similar to hypothetical protein DDBDRAFT_0192024 [Dictyostelium discoideum AX4] (GB:XP_629025.1) 0.152487403151183 1.61398679943193 0.135129525617184 1 0.562757885909171 6.88613555486861 0.152487403151183 0.08012631863387
AT4G37560_at 9.03643975273651 9.18636194742032 9.73132950254444 9.6940241187553 9.64028165480489 9.12688104494837 9.86356824475513 9.45180605425643 9.02080282127114 9.42125563041454 8.52821889533417 8.58135934272267 8.50674367557243 8.69243540619864 8.43964281781668 9.28766324392955 9.13349137163124 8.3802315643039 9.17246426621255 0.151640650947579 0.146213438492538 0.149559583416082 0.149196774986524 0.148545640748664 0.15749363821366 0.148400557127294 0.150134082194780 0.175417547599928 0.146579456617970 0.158435147694540 0.157174986739975 0.146677475673131 0.156318527264572 0.152912596734885 0.146213438492538 0.166840094325635 0.164182183516046 0.151497127706968 4 4 + 17647549 17648170 17647910.182 17646402 17648678 + gene protein_coding_gene FALSE TRUE AT4G37560.1 formamidase, putative / formamide amidohydrolase, putative similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37550.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346.1); similar to formamidase [Synechococcus sp. WH 5701] (GB:ZP_01084549.1); contains InterPro domain Acetamidase/Formamidase; (InterPro:IPR004304) -0.173766267903132 -1.61357214873856 0.135219902057442 1 0.562220357318546 18.4156186378550 -0.173766267903132 0.116987595097859
AT1G65110_at 1.66932053984484 1.72681019403567 1.84223226592394 1.94302647431250 1.80253782308394 1.77191831785413 1.95291579949058 1.78408712356155 2.22057966574629 2.22628928448224 2.01458783962284 1.69845066327159 2.13169332643542 1.90450589145239 1.52560679550159 1.74082515783104 2.14651899913725 1.98823990087581 2.21633512837198 0.146111761553495 0.14754681311995 0.149411111297077 0.152818107461108 0.150775318033784 0.147939110734249 0.147624355529801 0.149756444519284 0.146111761553495 0.149475182378996 0.152642489374656 0.148991964364175 0.153031409968180 0.154641059696714 0.149534321872326 0.150932359065578 0.149452913906665 0.152179046725927 0.148750460788731 1 1 - 24187628 24188374 24188013.182 24187622 24191993 - gene protein_coding_gene FALSE TRUE AT1G65110.1 ubiquitin carboxyl-terminal hydrolase-related similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65130.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65200.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65120.2); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) -0.135309574186856 -1.61283598565495 0.135380486009895 1 0.561266236425489 3.86904186624648 -0.135309574186856 0.0358458033069042
AT2G14160_at 1.35084640767708 1.04558218374122 1.35815761177667 1.47801802343372 1.24744464613315 0.845490878653048 1.43288568181006 1.48949118992723 1.47747496069909 1.26017963653683 1.04633615475322 1.34753735079575 1.87327994737508 1.28529287165021 1.29924977226269 1.19183749205146 1.18781704409974 1.15419172052639 1.81093365800517 0.209725741826553 0.201746185493813 0.209678714601387 0.208512087027118 0.198446848372422 0.211792399484022 0.212007494550930 0.213873103180532 0.206563670985527 0.211185091737801 0.212455386855071 0.198446848372422 0.211413081429342 0.198446848372422 0.207284566633032 0.198759743157343 0.200161592666757 0.211605736367428 0.198559016861097 2 2 - 5983585 5983857 5983724.222 5983547 5983883 - gene protein_coding_gene FALSE TRUE AT2G14160.1 nucleic acid binding similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G21690.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.157713433340399 -1.61267071931129 0.135416559713693 1 0.561052073937106 2.68818401752886 -0.157713433340399 0.0903079722559032
AT4G22360_at 7.71172909863267 8.13390045552177 7.6178402251592 7.86864056692686 8.09077046652932 8.03352169590422 7.85185542992307 7.7866878538437 7.53419706167325 6.81875214889309 6.64303402482774 6.76632257261225 7.09711980780054 7.09054461323594 5.98243266401019 7.04779270122521 7.05798371308208 6.71919138034271 7.07681212678126 0.209778021517797 0.207394785482698 0.211798925195633 0.215157827411866 0.211543977975438 0.214950033142836 0.207393478014508 0.208736593640401 0.219309298109431 0.209909680171648 0.210925394578108 0.213984205088771 0.216143816004375 0.211480083137966 0.208578904761888 0.207393478014508 0.21873462555929 0.210225666252357 0.21183379560022 4 0|4 /|+ 11808955 11809645 11809231 11807672 11810129 + gene protein_coding_gene FALSE TRUE AT4G22360.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19080.1); similar to SWIB complex BAF60b domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99032.1); similar to Os08g0502800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062171.1); similar to Os04g0665500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054177.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.155525532662094 -1.61241656471298 0.135472052141367 1 0.560722749323225 14.8587714559341 -0.155525532662094 0.0862940340230774
AT3G20570_at 5.69411326765508 6.07658278148995 4.4003602504983 4.98034761168832 4.51487779747982 5.01351633920569 6.05429451869977 6.60029430273552 5.32161260712965 4.56352514407774 6.35119879977777 7.33573047451127 5.47159433072027 5.59016080490279 6.75760116710567 6.56782381217399 5.43201044016002 5.55044983621799 5.66826022028493 0.291183362458738 0.276886216595220 0.288247350162597 0.280341759365236 0.286096731504287 0.301503668801218 0.276886216595220 0.284032246484959 0.286423216324957 0.277499225067070 0.286015751136889 0.27702450128393 0.281980962977192 0.294315141055928 0.289308841852754 0.2803828217539 0.295004803262182 0.286725480311985 0.276886216595220 3 3|0 -|/ 7186984 7187413 7187200.667 7186528 7187527 - gene protein_coding_gene FALSE TRUE AT3G20570.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G25090.1); similar to unknown [Brassica rapa] (GB:ABB97040.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.215720250114132 -1.61240690298943 0.135474162089448 1 0.560710230594948 11.0750669580284 -0.215720250114132 0.175582222826914
AT1G62930_at 4.88150313815597 5.12460898286579 4.8347573982031 4.8823202971684 4.64180022988735 4.99853500099305 4.77225879027232 5.30616426188154 5.43585964729094 6.10070210338519 6.10081807409556 5.89194034054464 5.36518613475565 5.74360728839864 5.11436942256454 5.47966016252342 5.48600290603264 5.07760538827987 5.56524246827076 0.255637918589459 0.251527977615633 0.258143721031508 0.251527977615633 0.265370550829001 0.260632335126638 0.261563909870967 0.260512963253763 0.265599138560087 0.259068468632332 0.26132374010367 0.264444812040342 0.269828006362069 0.263995017047886 0.260389368252105 0.251527977615633 0.284448204620097 0.252187397597166 0.251527977615633 1 1 + 23311581 23312265 23312028 23310199 23312348 + gene protein_coding_gene FALSE TRUE AT1G62930.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63080.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to fertility restorer [Raphanus sativus] (GB:CAD61285.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.174991626698596 -1.61223602454631 0.135511483680567 1 0.5604888300045 10.5467435729109 -0.174991626698596 0.119103535711974
AT1G20720_at 1.99518961377448 1.70127595885754 1.64829511420225 1.86902210662077 1.68448359529080 1.85367703979593 1.89591988184258 1.47052988993265 1.69493260594151 1.96610107575001 2.27113828367321 2.16586218139822 1.97550821400610 2.14487618491709 2.86794363262383 1.71908955648291 2.30161348673525 2.03025131231853 1.90246814024542 0.225097415610341 0.220363389288939 0.221314550420573 0.218926986758431 0.220799192444452 0.225814578187564 0.226411160825084 0.221497489747455 0.228041925357748 0.234161593543111 0.229172184670138 0.220599447966834 0.224883349192022 0.219206461836854 0.218926986758431 0.22891741091572 0.223588279731141 0.218926986758431 0.223464334578699 1 1|0 -|/ 7185802 7186822 7186387.667 7185648 7192784 - gene protein_coding_gene FALSE TRUE AT1G20720.1 helicase-related similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20750.1); similar to putative BRCA1 interacting protein C-terminal helicase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD33894.1); similar to Os09g0551800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063870.1); contains InterPro domain DEXDc2; (InterPro:IPR006554); contains InterPro domain Helicase c2; (InterPro:IPR006555); contains InterPro domain DEAD_2; (InterPro:IPR010614); contains InterPro domain DNA repair helicase Rad3; (InterPro:IPR013020) 0.164087688541351 1.61205193341856 0.135551701198028 1 0.560250325487595 3.78431713195548 0.164087688541351 0.101600731893896
AT4G29750_at 7.66798069516945 8.09651320303702 7.28673545638284 7.16147104184394 8.21120641211486 7.70402460643426 8.2129655011864 7.68715638501882 6.93774690330219 7.67968162188585 7.12613112030398 7.20697601462477 7.12958501805159 7.09777299258025 7.18945829331118 7.67003061596968 7.45893490712529 7.23521029515232 7.36963336295861 0.170523116216003 0.164877857080866 0.161468304436959 0.166685857622604 0.164317962549546 0.166477698717347 0.173161014247271 0.168047579111939 0.190137416463482 0.163042699545881 0.175152583803285 0.16984296424295 0.16782522808672 0.177607982058465 0.180431128060566 0.171116289461064 0.167039410721234 0.172721987721587 0.160973212179355 4 4 + 14571982 14572779 14572362.364 14569734 14572810 + gene protein_coding_gene FALSE TRUE AT4G29750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to Os09g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062990.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.195026394575638 -1.61205148165385 0.135551799905867 1 0.560249740210366 15.0501481809095 -0.195026394575638 0.148165507706922
AT2G35110_at 6.45148487879411 6.88000201452905 6.53589423064676 6.64483746642747 6.33592884389529 6.5676991957329 6.25073029545387 6.49491354652616 6.76590318682836 6.71591212496586 6.24162262547025 6.05918348772402 6.35561080647373 6.47004971799088 6.31179723571058 6.86385084304395 6.15723668937697 6.72942701954931 6.68458717490366 0.178035059261596 0.164291450468536 0.176566603873919 0.164883784396517 0.173733338942531 0.180817852246559 0.171523594367374 0.167836485194819 0.173232244257080 0.169800691034076 0.170194277830808 0.170915573928800 0.170988823703590 0.1672799465817 0.167684553047737 0.165026309966559 0.185316275672083 0.175676914857793 0.177634027934466 2 2 - 14803059 14803678 14803318.727 14802794 14811009 - gene protein_coding_gene FALSE TRUE AT2G35110.1|AT2G35110.2 GRL/NAP1/NAPP; transcriptional activator|GRL/NAP1/NAPP Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Identical to Protein NAP1 (Nck-associated protein 1) (AtNAP1) (AtNAP125) (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) (NAP1) [Arabidopsis Thaliana] (GB:Q5S2C4;GB:O82180;GB:Q66GU3;GB:Q6BDH4); similar to Os08g0544500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062406.1); similar to hypothetical protein MtrDRAFT_AC147481g14v1 [Medicago truncatula] (GB:ABC75364.1); contains domain SUBFAMILY NOT NAMED (PTHR12093:SF1); contains domain FAMILY NOT NAMED (PTHR12093) -0.16086480435768 -1.61137872012074 0.135698864524194 1 0.559378259407293 13.0805520417007 -0.16086480435768 0.096172086753275
AT1G02170_at 8.23618837972129 8.2347343568191 8.2857626459537 8.34653846016614 7.6851650123172 7.96769953453317 7.2376567069197 7.489125420038 8.07453346929374 7.86836535090703 7.83105977443158 7.82234781470435 7.71824552591053 7.89992179018314 7.31972677173626 7.93699584298663 7.97606216777119 8.07297772804724 7.46498352588554 0.159112163013527 0.158456776899545 0.168574521577622 0.156245493050123 0.156135832350062 0.166325893866060 0.162501732204915 0.163001978130013 0.159997292660488 0.161665727426801 0.157691776285838 0.153081850722339 0.159812662543031 0.150741233676812 0.155814095962678 0.153692837819741 0.162672410507761 0.152516972297929 0.173159896000495 1 1|0 +|/ 412625 413400 412988.125 411883 413554 + gene protein_coding_gene FALSE TRUE AT1G02170.1 LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain similar to latex-abundant family protein (AMC2) / caspase family protein [Arabidopsis thaliana] (TAIR:AT4G25110.1); similar to hypothetical protein [Oryza sativa] (GB:AAG60197.1); similar to Os10g0565100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065417.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) 0.145702462821981 1.61080579792132 0.135824215274957 1 0.558636274884541 15.7477561273919 0.145702462821981 0.0662955417861282
AT2G45190_at 7.16829212702132 7.0146360892002 6.72503121937097 6.6130084606577 8.29298988010463 7.91337727511078 8.41729634787885 8.29192623907987 8.07979159747113 7.76695157657201 8.17648743258006 8.45471917523467 8.42484187542104 7.89430703402994 7.78052137992526 8.6640214123812 7.51572033095083 7.65470455402877 8.25712152632205 0.199679022656617 0.208356672276209 0.209654388436300 0.205425654942357 0.211452753334463 0.205021134158335 0.201115988762531 0.201417478609008 0.220845422518494 0.196704808107194 0.194965333652513 0.201589948422966 0.196530907658522 0.206244591080453 0.199248194961847 0.196562386739205 0.214814456053225 0.21277884863876 0.196763550496099 2 0|2 /|- 18635532 18637338 18636605.556 18635339 18637786 - gene protein_coding_gene FALSE TRUE AT2G45190.1 AFO (ABNORMAL FLORAL ORGANS); transcription factor Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. Identical to Axial regulator YABBY1 (Protein ABNORMAL FLORAL ORGANS) (Protein FILAMENTOUS FLOWER) (Protein antherless) (Fl-54) (YAB1) [Arabidopsis Thaliana] (GB:O22152); similar to YAB3 (YABBY3), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00180.1); similar to YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus] (GB:AAS10177.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.150446079726731 -1.61075951143811 0.135834346837562 1 0.558576336518809 15.6072131878567 -0.150446079726731 0.0766111785813196
AT1G63090_at 7.88627916941114 8.14188355638755 9.34465625417693 9.20527130412646 9.67882514774726 8.9374452497815 9.8471578176874 9.98854619957277 9.96026372844323 10.0238960035153 9.70271111922103 7.82381923834387 9.20725514959265 9.44551334023824 7.96487098810235 9.396062808506 9.858301518448 9.31809779711324 9.39529446314818 0.164807286954867 0.165568517474404 0.150640745891179 0.154439361938683 0.147668825515945 0.157321209048025 0.155904363860792 0.153827541047882 0.162748122695116 0.153917675802156 0.147668825515945 0.158375914067595 0.149373120808625 0.162037078770046 0.155786109686194 0.148767469051729 0.154283312299575 0.149242066369693 0.149912471265580 1 1|0 -|/ 23394958 23395971 23395330.3 23394728 23396516 - gene protein_coding_gene FALSE TRUE AT1G63090.1 ATPP2-A11 (Phloem protein 2-A11) similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE90560.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.188994800114956 -1.61055715629810 0.135878647800351 1 0.558314309860897 18.5701232840187 -0.188994800114956 0.139992195073489
AT2G30980_at 8.95604336542341 8.71520071013007 8.6424997189812 8.43938988517819 8.94010692790247 8.7409859066618 8.62206738030283 8.20846532726493 8.84734677036013 8.32287415073164 8.97116427313854 9.04515913065427 8.5701459022973 8.79158179770483 9.09688816719914 8.67005492938133 8.14598322731738 8.89353775745902 8.37963191328868 0.122210334370712 0.117030094865746 0.129167428955561 0.117719676969810 0.117030094865746 0.122042801811550 0.117030094865746 0.117781878838028 0.132859304415028 0.117030094865746 0.120278258767765 0.117030094865746 0.122440211424402 0.121437787218233 0.122446188183334 0.118206563549678 0.147362427479426 0.117030094865746 0.123812301635662 2 2|0 -|/ 13189632 13190474 13190083.25 13189146 13193026 - gene protein_coding_gene FALSE TRUE AT2G30980.1 shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) Identical to Shaggy-related protein kinase dzeta (EC 2.7.11.1) (ASK-dzeta) (ASK6) [Arabidopsis Thaliana] (GB:Q39010;GB:O80862); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G06390.2); similar to BIN2 (BRASSINOSTEROID-INSENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT4G18710.1); similar to shaggy-like kinase etha (OSKetha) [Oryza sativa (japonica cultivar-group)] (GB:CAA73848.1); similar to putative shaggy-like kinase dzeta [Oryza sativa (japonica cultivar-group)] (GB:BAA92966.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80751.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.160874100292217 1.6104615851053 0.135899575321987 1 0.558190562796755 17.3029359075327 0.160874100292217 0.0963488160035971
AT2G38350_at 1.55896049093648 1.83734660874732 1.58336322502508 1.62382879817392 1.48743959039039 1.46455281657550 1.40539537761350 1.49712987685292 2.22014825265992 1.94378399162278 1.67918356347332 1.63500666004621 1.34136965508506 1.72797284302691 1.62755120089354 1.82241169942591 1.63672869440814 2.04660265175831 1.63877393363705 0.207738483760630 0.205300680350405 0.213973498233265 0.200979026209913 0.206493357135303 0.202251159098508 0.200979026209913 0.206311881328684 0.211680918687173 0.202366912508966 0.205430307683970 0.203131319117059 0.205203504642688 0.210070435227181 0.201730202118741 0.209563493512259 0.201947293220163 0.20107769557264 0.208913382157449 2 2 + 16075438 16076341 16076173.273 16075419 16076386 + gene protein_coding_gene FALSE TRUE AT2G38350.1 unknown protein -0.139772001310786 -1.61011762666469 0.135974916480300 1 0.557745235386467 3.36917147986668 -0.139772001310786 0.0513582731694961
AT1G28550_at 0.497327907788206 0.430787612073789 0.539086573574759 0.312940369847029 0.358775846575371 0.463952987000599 0.302173680310432 1.03589437150278 0.968682823349702 0.578052985166051 0.500525682912592 0.511551249692436 0.276270063636746 0.638128865413098 0.475072271989955 0.4841658496307 0.511395418831167 0.348982113372268 0.525348032551958 0.169703920814999 0.168078937426555 0.166049988574462 0.169170552834924 0.172013549603563 0.166242256560439 0.167145434504600 0.169569477869468 0.168691594524967 0.165493436078073 0.171292780081966 0.163755627533001 0.168358384951521 0.170022864103097 0.172502094475985 0.171667078218308 0.172582069778857 0.16974111921133 0.173810127141484 1 1 - 10036980 10037581 10037289 10036952 10037684 - gene protein_coding_gene FALSE TRUE AT1G28550.1 AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding similar to ArRABA1h (Arabidopsis Rab GTPase homolog A1h), GTP binding [Arabidopsis thaliana] (TAIR:AT2G33870.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02112.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.185145061461865 -1.60987353714536 0.136028404528935 1 0.557429243091464 1.07209544514617 -0.185145061461865 0.134602491537673
AT1G70880_at 1.91776921496884 1.44126730892059 1.70989509282171 1.83373695289691 0.947472435195518 1.23653558620231 1.23739727898141 2.09290624131079 1.71042532925883 1.85712508445776 1.61329402931384 1.60740900747107 1.60025038279469 1.69042073748747 1.5503198882815 1.44988697570223 1.59943234825701 1.82599660331264 1.86566302157397 0.255956288261373 0.244361747386458 0.245461730583507 0.244028037709305 0.248000992222211 0.255680838758741 0.243312746435717 0.246459152584191 0.24881881816169 0.246053856904027 0.242244679268781 0.246323781335287 0.246121371413718 0.243705442493884 0.252062506897988 0.247034904501349 0.260872536872784 0.247857480387465 0.248991155928952 1 1 - 26726787 26727346 26727119.636 26726543 26727440 - gene protein_coding_gene FALSE TRUE AT1G70880.1 Bet v I allergen family protein similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.217184946392796 -1.60935016773522 0.136143154490559 1 0.556751795803282 3.26622120974946 -0.217184946392796 0.177989389684860
AT3G08020_at 5.95725789808491 6.21866030902661 6.26312819913762 6.34011280015659 6.60922558540862 6.60447315492931 6.18419351869457 6.02472030670269 5.80350221338534 5.54396039465191 5.70129112641993 5.62955369062911 5.43949425612212 5.48973427752637 5.12142355988584 5.46680330187381 5.70213185109879 5.33228705998337 5.33737683541764 0.163597889771908 0.167213936491864 0.172809165450227 0.161621818784450 0.166866980786069 0.167416117637583 0.164410372833992 0.162451080617417 0.169690824666437 0.170625258248126 0.163440565403361 0.168989728920698 0.174889261500810 0.17666729280927 0.170940999859966 0.165628535961830 0.165783098831844 0.168149504961523 0.166852544569994 3 3 - 2557787 2558432 2558145.455 2557443 2561808 - gene protein_coding_gene FALSE TRUE AT3G08020.1 protein binding / zinc ion binding similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G52100.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_795757.2); similar to Os12g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066909.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.140876834702479 1.60922369918984 0.136170895804652 1 0.556588114636732 11.7986979906480 0.140876834702479 0.0546458677735593
AT2G35940_at 8.5385218981383 8.64040765639327 8.71242824422719 8.8557076558695 8.80242619642645 8.7647473985067 8.68572762664201 8.89863994871508 7.69118597778194 8.04159905735078 7.69573970186577 7.77420250976788 8.14222578841119 8.23235735426937 7.11881315336837 8.66551702212418 8.59422778958124 7.90813708533809 7.76371927653493 0.139372825209953 0.139010910670915 0.13907847310326 0.152176783028386 0.133744601943624 0.13991086765428 0.136363795877447 0.138276407186251 0.142368831690082 0.137926465786588 0.142282616492117 0.141859053056938 0.137927297700638 0.146777613056527 0.146708890453229 0.136842405879212 0.145769102268935 0.135120906031091 0.144191736799382 2 2 - 15096260 15096678 15096458.909 15095911 15099494 - gene protein_coding_gene FALSE TRUE AT2G35940.1|AT2G35940.2|AT2G35940.3 BLH1 (BLH1); DNA binding / transcription factor|BLH1 (BLH1); transcription factor|BLH1 (BLH1) BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.138618768993422 1.60912071539341 0.136193489336305 1 0.556454833994226 16.6616111553548 0.138618768993422 0.0482264091656344
AT4G35000_at 11.4229094545068 11.4849691076521 11.7530015017357 11.7845978917541 11.8292369053051 11.711405543397 11.8324181383688 11.9387443557287 11.5407419620135 11.5350819970315 11.5996910134157 11.5016851657154 11.7389909133846 11.6478965673459 11.5472599359834 11.6810701335370 11.8236080833059 11.7072948532113 11.3896379467714 0.0647946491314555 0.065007533363146 0.0690710615807286 0.068824191678285 0.0661987492022832 0.0667077012832777 0.0674188344537265 0.0647946491314555 0.0717177156355807 0.0710369086721355 0.065562006387602 0.0647946491314555 0.0679418372902998 0.0668721981086409 0.067614045294493 0.0647946491314555 0.0667899820785847 0.0671251706693146 0.0684771197578132 4 0|4 /|- 16665071 16666347 16665795.143 16664827 16667723 - gene protein_coding_gene FALSE TRUE AT4G35000.1 APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein. Identical to L-ascorbate peroxidase 3, peroxisomal precursor (EC 1.11.1.11) (AtAPx03) (APX3) [Arabidopsis Thaliana] (GB:Q42564;GB:O81810); similar to APX5, L-ascorbate peroxidase/ peroxidase [Arabidopsis thaliana] (TAIR:AT4G35970.1); similar to ascorbate peroxidase (GB:AAB52954.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) 0.133624988891235 1.60902891127679 0.136213632951296 1 0.556336026169062 23.2918725548941 0.133624988891235 0.0299935369650898
AT3G56430_at 4.2933500187243 4.41662852896419 4.24573792594713 3.86880337831712 4.06907271981332 3.89639844427038 4.80255531488188 5.04814045091936 3.72779086285425 4.21882955021681 3.91018782944365 4.50024717258917 4.39122329577202 4.08587526231369 4.29478913266942 4.24816859914967 4.13180120686878 3.89865148958841 3.67108772354614 0.252640137044004 0.244122495802471 0.250020217899862 0.241298014773612 0.241280195655936 0.252431920885361 0.248559797213804 0.263139203022967 0.264343556369892 0.248508663745963 0.253664512174368 0.244131900042912 0.255629957047483 0.253969118068966 0.241280195655936 0.246442633125475 0.254702272404062 0.245482470855888 0.250491902315014 3 3 - 20934855 20935657 20935322.182 20934579 20936788 - gene protein_coding_gene FALSE TRUE AT3G56430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40800.1); similar to Os01g0168300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042128.1); contains InterPro domain Mitochondrial TIM21; (InterPro:IPR013261) -0.155058420804247 -1.60876209792012 0.136272191909436 1 0.55599075342127 8.35767953644058 -0.155058420804247 0.0860772069065149
AT4G08740_at 0.683789774559195 1.43103933320901 0.635199798200435 1.03647389492077 1.01090427370827 1.26382092355086 1.29855441729326 1.09614578235625 0.57773616145979 0.938267634835165 0.965894444756522 1.09349362072968 1.44371634206046 0.676333304702197 1.29536964774407 0.600862773208055 1.51889694977297 1.52040475816473 0.272636725089129 0.208998869334822 0.209602047827507 0.213839423147272 0.217127352208714 0.21536836537259 0.208998869334822 0.216747294913753 0.216835560400944 0.215609849113085 0.217981063690863 0.213541216413384 0.216945938775878 0.218813534109574 0.210008885789017 0.211002746833435 0.211968149353247 0.219072922530066 0.211782224889482 0.213682693790583 4 4 + 5579329 5579661 5579486 5579031 5579742 + gene protein_coding_gene FALSE TRUE AT4G08740.1 unknown protein 0.201187684377481 1.60866039045589 0.136294520029605 1 0.555859146532673 1.92478351835994 0.201187684377481 0.157121712085692
AT3G07230_at 10.4673939840861 10.6827828564902 10.6315545730046 10.6950467123650 10.8802308867853 10.5188245479882 10.5036173618780 10.6502873957124 10.4086675543435 10.4728813576087 10.8871692169875 10.9554613286312 10.7060511034512 10.5741556964485 10.8280010720995 10.64720796184 10.4097058039741 10.3666580798421 10.5448972147001 0.0883847139354545 0.0855799269245981 0.0867742310025446 0.0870987177156093 0.0837171506811464 0.0966891951560864 0.0829914581278684 0.0852485308916987 0.0908466920949743 0.0867619603764235 0.0824962838807972 0.0827547371999797 0.0831047209862886 0.0832908583985392 0.0853856583852378 0.0824962838807972 0.0928377152140896 0.088951422041613 0.0852705766626345 3 3 + 2299928 2300157 2300039.636 2299780 2300273 + gene protein_coding_gene FALSE TRUE AT3G07230.1 wound-responsive protein-related similar to Os12g0405700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066628.1); similar to Wound-induced basic protein (GB:Q09020); contains InterPro domain Wound-inducible basic; (InterPro:IPR012643) 0.150856510592969 1.60850180491861 0.136329341180243 1 0.555653950515002 21.2023589523520 0.150856510592969 0.077884261999934
AT4G26320_at 2.52675888273791 2.27952454659844 2.63963718054727 2.68094264124999 2.47911208600036 2.56827871429663 2.64259822648475 2.39253538963835 3.28397062810402 3.28111168304856 3.10143115211088 3.34739927458657 3.20472904756275 3.38913911541367 3.15285670546025 3.41481549053165 3.26044342617554 3.74773918369411 2.94696471150733 0.190912657433402 0.190912657433402 0.192090574971427 0.192165956924766 0.190912657433402 0.194838677863510 0.196652197066409 0.190912657433402 0.195607049887691 0.197022511257481 0.190912657433402 0.194993296275282 0.193261066674372 0.196891471945619 0.193256092901659 0.200952877933646 0.190912657433402 0.20026805152296 0.193585371248017 4 4 - 13317344 13317388 13317374 13317109 13317479 - gene protein_coding_gene FALSE TRUE AT4G26320.1 AGP13 (ARABINOGALACTAN PROTEIN 13) Identical to Arabinogalactan peptide 13 precursor (AG-peptide 13) (AGP13) [Arabidopsis Thaliana] (GB:Q9STQ3); similar to AGP14 (ARABINOGALACTAN PROTEIN 14) [Arabidopsis thaliana] (TAIR:AT5G56540.1); similar to unknown [Brassica rapa] (GB:ABB97032.1) 0.144137613856998 1.60811845686309 0.136413546549370 1 0.555157979798108 5.77517421610849 0.144137613856998 0.0631858263517061
AT2G47680_at 1.76173551303552 2.12861353264722 1.57762979001965 1.73714543382770 2.01818536528428 1.84344617221783 1.41196659966748 1.40758018684531 2.23381089714364 1.44816620548251 1.37655463851366 1.78955816708572 1.44249675313241 1.52537412274898 1.48052216715056 1.50317181142632 1.77331043819285 1.77158719512855 2.31419871016053 0.206624877812544 0.208008377915721 0.206444632191423 0.204263319474875 0.203859810618846 0.202471795635864 0.202471795635864 0.205304824777474 0.208233606603733 0.214818394229575 0.204360407577673 0.202471795635864 0.205525139131462 0.205185900525800 0.20764251620171 0.206733525810611 0.203890922657108 0.20767125622311 0.202471795635864 2 2 - 19552924 19553560 19553271.273 19552898 19557975 - gene protein_coding_gene FALSE TRUE AT2G47680.1 zinc finger (CCCH type) helicase family protein similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35920.1); similar to Zinc finger, CCCH-type; Beta-lactamase, class A; DEAD/DEAH box helicase [Medicago truncatula] (GB:ABE84992.1); similar to Os01g0256800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042628.1); similar to ATP-dependent RNA helicase A -like [Oryza sativa (japonica cultivar-group)] (GB:BAE95808.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.149637813484015 -1.60757735143267 0.136532482517056 1 0.554458021777564 3.52656141549376 -0.149637813484015 0.0755513433175907
AT2G12480_at 2.50739033079572 2.62069222016025 2.75754774905701 2.59623446625999 2.66256058894369 2.98897188537180 2.92594078122216 3.16772635179901 3.13332777378217 3.27324177491959 3.1584972840248 2.82252496908458 3.51709070543087 2.81102842064672 3.34801071155924 2.98493051949534 2.67585925306732 2.96489960654993 3.44247188814164 0.289096598864389 0.282542758438505 0.283594993053756 0.282764184102162 0.285057798171152 0.281671101474868 0.285349992093425 0.281225850622671 0.291605615725041 0.2804919324783 0.28219957807335 0.283914156401103 0.278060452967315 0.280970694495080 0.279522300171252 0.283548839809347 0.285952356775675 0.283328829692924 0.281242708983810 2 2|0 -|/ 5076903 5077759 5077291.625 5076672 5079615 - gene protein_coding_gene FALSE TRUE AT2G12480.1|AT2G12480.2 SCPL43; serine carboxypeptidase similar to SCPL41 (serine carboxypeptidase-like 41), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G42230.1); similar to SCPL42 (serine carboxypeptidase-like 42), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G42240.1); similar to SCPL44 (serine carboxypeptidase-like 44), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G43780.1); similar to Os11g0213600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067496.1); similar to Serine carboxypeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93967.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.150883688567473 -1.60747067107887 0.136555941830074 1 0.554320039406435 5.93756754470795 -0.150883688567473 0.0781364114003718
AT1G61290_at 1.73180196508719 1.77937929005407 1.80114149695881 2.02346434958166 1.5717307811547 1.91472765946581 1.6888207869163 1.43093889211684 1.40174363422335 1.93766721963372 1.47942068252705 1.87217461097280 1.60564384666442 1.89015230292107 1.62852842089395 1.32665863764687 2.09389150680689 1.76974674068704 1.37234157818728 0.215678994041614 0.221494618624093 0.216459991425579 0.221793106735942 0.224456342934164 0.222588951712905 0.217966193171694 0.222025924341097 0.222022279143690 0.224287777929133 0.228613683749727 0.215746674541527 0.216386271066929 0.218459699846569 0.215678994041614 0.215678994041614 0.222361337504983 0.222249578486386 0.221200740733793 1 1 + 22609175 22609844 22609552.818 22608674 22609881 + gene protein_coding_gene FALSE TRUE AT1G61290.1 SYP124 (syntaxin 124); t-SNARE member of SYP12 Gene Family Identical to Putative syntaxin-124 (AtSYP124) (SYP124) [Arabidopsis Thaliana] (GB:O64791); similar to SYP125 (syntaxin 125), t-SNARE [Arabidopsis thaliana] (TAIR:AT1G11250.1); similar to putative syntaxin-related protein Nt-syr1 [Oryza sativa (japonica cultivar-group)] (GB:BAD25019.1); similar to Os06g0590500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057967.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.153861893935937 1.60740065578874 0.136571340320848 1 0.554229483215093 3.38218127149432 0.153861893935937 0.0840413356679515
AT4G26880_at 1.29540004684231 1.33340535202829 1.42029297699081 1.03686501632090 1.41757413163814 0.840819762080105 1.30006712689197 1.36021818364810 1.56432006917596 1.56997124403766 1.83079784315214 0.902428197877196 1.45039766264441 1.34466406563061 1.46441330256117 1.16071458349549 1.00323518323042 1.30932548307383 1.41234376487520 0.224643256186994 0.228268721019271 0.229957727878334 0.229192110080592 0.23161788655136 0.234301402757729 0.237791413469217 0.229660002450231 0.229942185971776 0.224792188130179 0.228644904463014 0.233372594942213 0.230087600930155 0.227209936077470 0.224643256186994 0.229569378013071 0.230083668713456 0.236918178874053 0.228229384791869 4 4 - 13508312 13508695 13508521.727 13508271 13508729 - gene protein_coding_gene FALSE TRUE AT4G26880.1 stigma-specific Stig1 family protein similar to stigma-specific Stig1 family protein [Arabidopsis thaliana] (TAIR:AT5G55110.1); similar to STIG1 [Nicotiana tabacum] (GB:CAA54838.1); contains InterPro domain Stigma-specific protein Stig1; (InterPro:IPR006969) -0.175341345708312 -1.60718307961805 0.136619201695493 1 0.55394808978343 2.66247635767396 -0.175341345708312 0.120484474512103
AT3G51330_at 7.36259234223824 8.27366480032381 7.83564827734824 7.94959282362256 5.2867059276076 5.91229505271517 2.31143358592089 2.67933878851634 6.0134502648055 3.53682132670224 2.25061685703081 2.07032906691743 1.76901721925523 2.12437916191718 1.78771901534838 2.24175947784138 2.28535213793695 2.69099496795967 3.09362441373043 0.388150047948649 0.386455044837243 0.384247119730333 0.381347231867462 0.359975992799043 0.372398307953912 0.356110487819264 0.356110487819264 0.359752669137269 0.356110487819264 0.36587933787567 0.362571116518309 0.359751429695187 0.358368947106346 0.358695402590689 0.356426538967924 0.361094822776659 0.356110487819264 0.356110487819264 3 3|0 -|/ 19064510 19065635 19064984.4 19064347 19067203 - gene protein_coding_gene FALSE TRUE AT3G51330.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51350.1); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51340.1); similar to chloroplast nucleoid DNA-binding protein -like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79194.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.236403936323301 -1.60681991940830 0.136699120861302 1 0.553478460491418 9.13498544467257 -0.236403936323301 0.202536984232974
AT2G46600_at 12.2840746645877 12.3733006514750 12.7486743126696 12.8168153705454 12.4921142740440 12.5986640589542 12.3484950614959 12.5940944684871 11.7534631747372 11.9163492326789 11.6111597892175 11.3667688395033 12.1107866437994 11.7702859145848 11.2806982850700 11.7268938581895 11.8137035552400 11.4320165223444 11.2051671945631 0.0660514300932984 0.0637619559425436 0.0676046792708048 0.0658626500772175 0.065501305258467 0.0693556775864315 0.0667489147023084 0.06562214239969 0.0712727609816069 0.0637619559425436 0.0651309130602936 0.0641912299433769 0.065685869957835 0.0676741872208881 0.0637619559425436 0.064087904526781 0.0651452614919421 0.0706031281747472 0.0643046095689327 2 2 + 19143272 19143520 19143407.455 19143090 19143671 + gene protein_coding_gene FALSE TRUE AT2G46600.1 calcium-binding protein, putative similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to Os02g0122600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045728.1); similar to Os06g0683400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058389.1); similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] (GB:AAF86307.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.139060883937892 1.60638970641012 0.136793849327756 1 0.552922200308833 24.1640452961090 0.139060883937892 0.0502384591758033
AT4G32180_at 7.68857805970687 7.7218861820438 7.83675535700053 7.71575554210981 7.7816848162957 7.6916268754609 7.22619073371324 6.98118198382962 7.34492120202088 7.12419876310453 6.65784220225294 6.2878449806064 6.69535269978934 6.52008882690876 5.86468021356526 7.01729252345705 7.14082885465007 6.65914031167824 7.23690129650457 0.172206524784558 0.167056376128335 0.165298371561041 0.162395199136673 0.163054195399427 0.162591886002568 0.166503226448173 0.167453858852178 0.172680345057225 0.163174473604293 0.170025133556241 0.166588426936784 0.167863209971824 0.183471417759568 0.166912063797218 0.167046302591303 0.173966708634683 0.162827028487059 0.165998561300219 4 4|0 -|/ 15537909 15538563 15538202.3 15537565 15543910 - gene protein_coding_gene FALSE TRUE AT4G32180.1|AT4G32180.2 ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase Encodes a protein with pantothenate kinase activity. Identical to Pantothenate kinase 2 (EC 2.7.1.33) (Pantothenic acid kinase 2) [Arabidopsis Thaliana] (GB:Q8L5Y9;GB:O49372;GB:O49374); similar to ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT1G60440.1); similar to Pantothenate kinase PanK and related proteins (ISS) [Ostreococcus tauri] (GB:CAL51484.1); similar to putative pantothenate kinase 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD33319.1); similar to Os09g0533100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063766.1); contains InterPro domain Fumble; (InterPro:IPR011602); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567); contains InterPro domain Protein of unknown function DUF89; (InterPro:IPR002791)|Identical to Pantothenate kinase 2 (EC 2.7.1.33) (Pantothenic acid kinase 2) [Arabidopsis Thaliana] (GB:Q8L5Y9;GB:O49372;GB:O49374); similar to ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT1G60440.1); similar to Pantothenate kinase PanK and related proteins (ISS) [Ostreococcus tauri] (GB:CAL51484.1); similar to putative pantothenate kinase 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD33319.1); similar to Os09g0533100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063766.1); contains InterPro domain Fumble; (InterPro:IPR011602); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567) -0.138980093018229 -1.60591217906419 0.136899063608465 1 0.552304864919951 14.5008195673485 -0.138980093018229 0.0501231874180684
AT3G51460_at 6.57106502854433 7.10188932302318 7.05915814849144 7.45505060630774 7.2868358533131 7.03697900589718 6.69990452591712 7.18476109564472 5.97740615439557 6.66694959167675 6.92308938090795 6.97187653002412 7.19377239825736 6.33650594531188 6.38737272107439 6.18823147364213 5.64276342847556 5.97953420442751 6.50775310433825 0.287722619034581 0.259730601691691 0.282513700691136 0.271169437012461 0.259351094899592 0.264643591858108 0.265849501491097 0.259492618074135 0.286411842290056 0.263433439823895 0.267680072653828 0.267169405149295 0.260015534021123 0.26649361177951 0.259351094899592 0.259351094899592 0.287140714961144 0.271383401411457 0.259351094899592 3 3|0 +|/ 19106871 19107854 19107429.571 19103683 19108332 + gene protein_coding_gene FALSE TRUE AT3G51460.1 phosphoinositide phosphatase family protein similar to ATSAC1B/IBS2 (IMPAIRED IN BABA-INDUCED STERILITY 2), phosphoinositide 5-phosphatase [Arabidopsis thaliana] (TAIR:AT5G66020.1); similar to Os11g0309000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067755.1); similar to Os02g0554300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047117.1); similar to MGC84016 protein [Xenopus laevis] (GB:AAH74260.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.194478943507473 1.60572790996494 0.136939682930115 1 0.552066675058557 13.46792022026 0.194478943507473 0.148466339150201
AT1G17800_at 1.80087129759398 1.26821189461626 1.94383133354068 1.52132057004631 1.57264542797502 1.69060002356831 1.55824698869228 1.71177735633258 1.20111434687010 1.56520764888287 1.4354267922698 1.32669318189703 1.44059064442494 1.57975905242734 1.66411083794308 1.52393900129159 2.20455798100993 1.93725907562671 1.38450813227979 0.206484308619713 0.202084811658290 0.201676246659092 0.206329048213156 0.204205614030937 0.201676246659092 0.203274903571522 0.206756785846957 0.21097489403645 0.208332896915988 0.203177549378816 0.204332562634699 0.206790217893315 0.203455999006114 0.204829038435013 0.204785124758473 0.201676246659092 0.210487759650165 0.208278862237496 1 1 + 6128822 6129355 6128991.364 6128816 6129501 + gene protein_coding_gene FALSE TRUE AT1G17800.1 plastocyanin-like domain-containing protein similar to ARPN (PLANTACYANIN), copper ion binding [Arabidopsis thaliana] (TAIR:AT2G02850.1); similar to plantacyanin [Lycopersicon esculentum] (GB:AAF66243.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.176377241328761 1.60557768510613 0.136972805567649 1 0.551872503245265 3.14476416831512 0.176377241328761 0.1223346228553
AT4G34510_at 0.627491765094855 0.393389955690327 0.501226491902322 0.653115761091079 1.04954423907937 0.762834344368485 0.927698597994144 0.727811167120918 0.523473667601871 0.857435683051051 0.665024764656513 1.0834234278813 0.722752620163833 1.46520154420424 0.632906783025383 1.14527058430833 1.16156572224606 0.795804191267218 0.811792620988596 0.212652535467011 0.214840128045115 0.216746047996177 0.210457312902413 0.210787114361708 0.209110871901838 0.209851536071804 0.206160549921107 0.21635762089563 0.205895545164171 0.221326790607302 0.212932353832955 0.211483989486548 0.212478989863462 0.211694971277259 0.208100615593418 0.205895545164171 0.221812486981658 0.205895545164171 4 4 + 16492665 16493214 16492969.818 16491801 16493423 + gene protein_coding_gene FALSE TRUE AT4G34510.1 KCS2 (3-ketoacyl-CoA synthase 2); acyltransferase Encodes a very-long-chain fatty acid elongase which is involved in the critical fatty acid elongation process in wax biosynthesis. Identical to Probable 3-ketoacyl-CoA synthase 2 (EC 2.3.1.-) (EC 2.3.1.119) (KCS-2) (Very-long-chain fatty acid condensing enzyme 2) (VLCFA condensing enzyme 2) (KCS2) [Arabidopsis Thaliana] (GB:O65677); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); similar to Os05g0568000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056354.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.150337692570262 1.60550253731999 0.136989377328676 1 0.551775375614035 1.55033622125916 0.150337692570262 0.0773985036677913
AT2G46710_at 7.57628729784255 7.46925641487031 6.75009777655322 6.72367507086168 8.27750031405655 7.85036425590776 8.21677721228872 8.20386996718563 8.66180188907184 8.10925063906822 8.8467967192918 9.16091048032945 8.99414640297992 8.68279161532272 8.81489226590145 9.06823198843336 8.19078780755257 8.41809962422242 9.04538500529069 0.144029086902923 0.139247841459672 0.148945751840219 0.162805788633732 0.137899068660347 0.143643468514565 0.133635971225011 0.141714634504874 0.143113643968483 0.138532437657856 0.135401852778029 0.139427386809632 0.133635971225011 0.140886169122063 0.143158054555522 0.133788418650806 0.138232910771574 0.146965066245865 0.137934332458964 2 2 + 19201043 19201687 19201288.455 19199005 19201919 + gene protein_coding_gene FALSE TRUE AT2G46710.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT4G03100.1); similar to rac GTPase activating protein 2 [Lotus japonicus] (GB:AAC62625.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.149767716754021 -1.60472944174328 0.137159964636975 1 0.550776312639044 16.3222591841030 -0.149767716754021 0.0763729226391389
AT4G37170_at 1.98847382533479 1.66342034280132 1.83072088622887 1.98830304795124 1.85084382083396 1.67462615798354 1.70451085396836 1.92006516637728 1.51947680981266 1.50138876873530 0.976891669337186 1.69129608790420 1.37788835581570 1.54202401127949 1.11024105964508 1.52942701393721 1.15457820255186 1.86051424525820 2.15229103450204 0.183736711466127 0.183503715390782 0.182199880006660 0.183617063611413 0.182533559600265 0.185493541408107 0.186629689907609 0.182813267610211 0.190618818910382 0.188106432746427 0.189772685984564 0.184541087658466 0.198147857400373 0.183838079663314 0.191619864519610 0.185914161814248 0.184723308090146 0.182504915290777 0.185827944333189 4 4 - 17498615 17499144 17498889 17498574 17500649 - gene protein_coding_gene FALSE TRUE AT4G37170.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to hypothetical protein MtrDRAFT_AC139526g18v1 [Medicago truncatula] (GB:ABE80149.1); similar to Os03g0235200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049485.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.151011012919125 -1.60467754679602 0.137171422204666 1 0.550709259420932 3.39249207188464 -0.151011012919125 0.0789266314557897
AT2G18740_at 5.7504621019349 6.02034942766729 5.54350885330518 5.87208545745541 5.99744802631671 5.41071123563193 5.96935903440203 5.66689630864791 5.47480634541055 4.74546372569692 5.59425222702504 6.4590260885236 5.28646435995408 5.66357812890919 5.86636519825733 5.77636434977976 5.39742268807503 4.82766599741062 5.05645234720458 0.198352475144992 0.19213970673543 0.199885152590313 0.194796095465118 0.192008537095502 0.200123047282571 0.196128978254861 0.191659448040907 0.204197936554157 0.193379336546119 0.196145236302173 0.189112116821089 0.191284695116239 0.196542392333698 0.191583377248797 0.192508851648772 0.196143778363410 0.194891517595156 0.188752052637100 2 0|2 /|+ 8130692 8131500 8131222 8130303 8132086 + gene protein_coding_gene FALSE TRUE AT2G18740.1|AT2G18740.2 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative similar to small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] (TAIR:AT4G30330.1); similar to PREDICTED: similar to CG18591-PA [Apis mellifera] (GB:XP_001119876.1); similar to Os02g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045754.1); similar to ENSANGP00000022836 [Anopheles gambiae str. PEST] (GB:XP_311506.3); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649)|similar to small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] (TAIR:AT4G30330.1); similar to Os02g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045754.1); similar to ENSANGP00000022836 [Anopheles gambiae str. PEST] (GB:XP_311506.3); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.185411624326044 1.60448558096038 0.137213812488857 1 0.550461232263502 11.1294191485931 0.185411624326044 0.135883235597308
AT2G40680_at 1.13335061680047 1.18837991411157 1.58452429403231 1.16895080722785 1.1876199883453 1.61708402738665 1.14019626900545 1.30378477618976 0.836799851899519 1.46439343762417 0.727534191721631 1.50287701293327 1.29173253916350 0.627795418111526 0.831989058047261 1.17251329826027 1.99698052391406 1.11911443742234 0.768311502223501 0.306625926390384 0.320416535687672 0.306625926390384 0.306625926390384 0.306625926390384 0.306625926390384 0.329258948751238 0.306625926390384 0.306625926390384 0.306625926390384 0.326350156071403 0.306625926390384 0.321382407227694 0.335005000702875 0.306625926390384 0.306625926390384 0.306625926390384 0.306625926390384 0.306625926390384 2 2 + 16980552 16980716 16980614 16979907 16980797 + gene protein_coding_gene FALSE TRUE AT2G40680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) 0.166882840626107 1.60391207530791 0.137340523856542 1 0.549720344332298 2.38147899856865 0.166882840626107 0.107646414712967
AT4G25330_at 1.30161359222929 0.962527142515719 0.918160490442484 1.16027904853135 1.53071749452894 1.21560646156052 0.938629982812662 0.903638767937053 1.14563550980963 0.808531938789081 1.20322305755923 1.18992006797976 1.24372418657336 0.998157208148304 0.729486672537461 1.35705112245124 1.56848818974617 1.47587699187998 1.30473903096941 0.228202093780784 0.219098493967655 0.217006343922223 0.217006343922223 0.225330010641672 0.217006343922223 0.222776501917257 0.217006343922223 0.221755059690153 0.233301777256278 0.2230722414759 0.221094513671879 0.217207134383817 0.221548228204698 0.219226244917321 0.225353563604808 0.224114258362457 0.233210502475095 0.221631917715251 4 4|0 +|/ 12958016 12958404 12958135.889 12957844 12958724 + gene protein_coding_gene FALSE TRUE AT4G25330.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV31331.1); contains domain Chromo domain-like (SSF54160) 0.157013639822768 1.60385755718238 0.137352574547723 1 0.549649922698362 2.26991817105249 0.157013639822768 0.090605374237331
AT1G62770_at 0.87782551614701 0.95891512990752 0.817115668113298 1.01827792130996 0.939941537183534 0.648196606886902 0.861854951656197 0.54238794532011 0.380790899648555 0.502473356100485 0.7849770173022 0.90771410732939 0.947244586016446 0.647519199392236 1.00059505607387 0.911447820926848 1.02858143354173 1.12064737237424 1.08944509330096 0.201272855449623 0.202681604290571 0.203976125004677 0.213050049540720 0.205289421401887 0.199687519785195 0.200525298270291 0.202816949483648 0.202514124028959 0.205034522434937 0.200000245321317 0.202430811460118 0.208388525528592 0.200696925868397 0.204936781014180 0.201697553549409 0.201867365131240 0.206299346266579 0.211070544316024 1 1 - 23249807 23250436 23250149.727 23249551 23250555 - gene protein_coding_gene FALSE TRUE AT1G62770.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT4G12390.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.153329044359335 1.603399980884 0.137453753939958 1 0.549058921704741 1.62114471313371 0.153329044359335 0.0837513149106094
AT1G63000_at 7.80886838924047 7.9015969064743 7.14724328949994 7.42713622030046 7.01792846944767 7.31561480004642 8.46659185272028 8.52302388798857 7.91377123130329 7.94867767743442 8.80411442866624 8.7732515643345 8.22245660978043 8.77050634342279 8.89801540357418 8.62654536062326 8.27825750530138 8.06063323941434 7.8447282279491 0.136092375992737 0.133684695117115 0.139861633492961 0.134824873530343 0.144193164583803 0.139890851252508 0.136680782909896 0.134945265875953 0.137153605436119 0.142607661979774 0.134596019223941 0.139971166565271 0.145240548865371 0.133684695117115 0.137689862729382 0.135668691968360 0.137860961378410 0.141352051276211 0.141807043533591 1 1 + 23346493 23347466 23347089.818 23346058 23347778 + gene protein_coding_gene FALSE TRUE AT1G63000.1 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) similar to RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1), UDP-glucose 4,6-dehydratase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G78570.1); similar to dTDP-D-glucose 4,6-dehydratase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29243.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913) -0.148104693144124 -1.60322995682627 0.137491366415596 1 0.548839345423434 15.9293079448574 -0.148104693144124 0.0731635244225923
AT3G59770_at 7.75987571062202 8.05757963616983 7.8479138046366 7.76997572602548 7.91299331815732 7.32641444138278 7.65726524494543 7.7407992717539 7.13341713079491 7.32495594494672 7.24131150959919 7.24006955102652 7.03590174298145 6.90944194180158 7.09511611392256 7.42184114997537 6.29578435907555 6.6315277668097 7.25441440778991 0.190015833179707 0.189232598230715 0.191898052854197 0.191864259879452 0.187338350802636 0.202267059389371 0.189336909192732 0.186047655704678 0.19141654099627 0.182158110627494 0.18575210389166 0.182084211053185 0.199899512186567 0.202828876213527 0.185175575890454 0.181616194620292 0.200623143356330 0.190511925615276 0.197683072665118 3 3 - 22090258 22090963 22090648.091 22090010 22097126 - gene protein_coding_gene FALSE TRUE AT3G59770.1|AT3G59770.2 SAC9 (suppressor of actin 9) Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G17340.1); similar to putative SAC domain protein 9 [Oryza sativa (japonica cultivar-group)] (GB:BAD52604.1); similar to WW/Rsp5/WWP; Synaptojanin, N-terminal; Galactose-binding like [Medicago truncatula] (GB:ABE83905.1); similar to WW/Rsp5/WWP; Synaptojanin, N-terminal; Galactose-binding like [Medicago truncatula] (GB:ABE89873.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.171638602133554 -1.60238808092626 0.137677738461198 1 0.547752311650566 14.8698371915831 -0.171638602133554 0.115539707984471
AT4G35700_at 1.76173485537398 1.61827493132349 1.7756234877205 1.51465652683672 1.55037144524013 1.88305568415756 1.96121590113306 1.66022310182598 1.70056421062961 2.1657089816364 2.12010935681591 1.66332080309285 1.61306430582473 1.47125030031211 1.81201111702117 1.59578309977952 1.86792061686723 1.99685359280459 2.17766423976124 0.178360206982777 0.179933775602648 0.184023578100472 0.179473260194289 0.179287977850263 0.180422617026142 0.174784888476372 0.183149966234336 0.174784888476372 0.183431039806545 0.18082283423601 0.174784888476372 0.174950372044296 0.180285920494317 0.182435682777964 0.176139207194732 0.178606226217316 0.178440341100595 0.183419956935443 4 4 + 16923586 16924002 16923784.273 16923324 16924325 + gene protein_coding_gene FALSE TRUE AT4G35700.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G35610.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.158271036518192 -1.60219127703294 0.137721338378711 1 0.547498245744887 3.60673697157168 -0.158271036518192 0.093186356803477
AT1G23300_at 1.53951445574353 1.80904027185528 2.04748512676254 2.16333915058837 2.03606059198726 2.02065266962068 1.92783272886685 1.90192379796925 1.84236780295388 2.3716909025343 1.84678006821523 2.08836713046263 1.75755233673329 1.95032390505065 1.82474686568559 1.96059640150553 1.90520247165291 2.38537338608033 1.66368361876251 0.19340043921259 0.191829105170565 0.194087469479111 0.194308116388280 0.19190281265726 0.199017458782827 0.190111733004289 0.19329338611731 0.195246132017048 0.203125383726824 0.190111733004289 0.190167281052480 0.198988151137105 0.194534621846147 0.197783273466502 0.190111733004289 0.199779002242962 0.205143145085098 0.198030535500144 1 1|0 -|/ 8264031 8264725 8264430.111 8263816 8266037 - gene protein_coding_gene FALSE TRUE AT1G23300.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G26590.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G38030.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87151.1); similar to Os08g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062445.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.138963475193680 1.60209191353672 0.137743355973755 1 0.54736997840112 3.8927887302193 0.138963475193680 0.0510364572341077
AT1G75330_at 8.66443743348036 8.51868798467244 8.51137351750498 8.54924015894046 8.58980541002087 8.22541090601742 8.68641136524761 8.66174600170547 8.55718210034605 8.9010671569031 8.5093268575313 8.8219370695824 8.17581315868616 8.75498668577052 9.17165768823922 8.6655886580986 8.57362783218479 8.4438098797151 8.84380014854017 0.140101414352446 0.135233811188772 0.138139001698429 0.140384160392919 0.139168424382126 0.136103473800687 0.136887073588123 0.143636920795363 0.143900530445663 0.135312450335702 0.142171197736056 0.132756285894009 0.137800366167797 0.147780157942910 0.140118636878207 0.135180063289043 0.135517681962135 0.146032356998214 0.139182987554215 1 1 - 28270121 28271032 28270465 28269920 28272073 - gene protein_coding_gene FALSE TRUE AT1G75330.1 OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- and carbamoyltransferase Identical to Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) (OTC) [Arabidopsis Thaliana] (GB:O50039;GB:Q9FWS2); similar to aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) [Arabidopsis thaliana] (TAIR:AT3G20330.1); similar to Ornithine carbamoyltransferase, chloroplast precursor (OTCase) (Ornithine transcarbamylase) (GB:Q43814); contains InterPro domain Aspartate/ornithine carbamoyltransferase; (InterPro:IPR006130); contains InterPro domain Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; (InterPro:IPR006131); contains InterPro domain Ornithine carbamoyltransferase; (InterPro:IPR002292); contains InterPro domain Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; (InterPro:IPR006132) -0.14580976067965 -1.60198854930252 0.137766263364151 1 0.547236551480554 17.2543607375266 -0.14580976067965 0.0683661246769087
AT4G28560_at 3.12487195655514 2.46116545816828 2.30310412359954 2.09131079993484 1.76053565476053 1.90258214411858 1.95957301450104 2.23392597254784 1.47690347411342 1.87932325558763 1.75894824160911 1.46769143725211 1.43910776856835 1.5965310750901 1.6339666921363 1.61545764684419 2.44556611498068 1.59100888147357 1.52703641011152 0.215969957043537 0.22647143553263 0.215851348324412 0.216103420797053 0.215131269029388 0.209158598337537 0.209158598337537 0.21469326460406 0.212163428181417 0.217384302410458 0.214251859762934 0.213577389971334 0.213000628956065 0.214103663474348 0.209158598337537 0.214261869802123 0.212901813521738 0.228537358007896 0.221401442374543 4 4 - 14116035 14116599 14116347.818 14116021 14117373 - gene protein_coding_gene FALSE TRUE AT4G28560.1 RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7); protein binding encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is expressed in all tissues examined. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G13230.1); similar to Os06g0627500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058121.1); similar to unnamed protein product; contains similarity to elicitor-inducible receptor EIR gene_id:T5M7.12 [Medicago truncatula] (GB:ABE90677.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.182360283766462 -1.60185339216233 0.137796221696113 1 0.547062092528119 3.89027819661413 -0.182360283766462 0.131886443073785
AT3G17060_at 0.66984993872235 1.02369604217864 0.936313883229957 0.51902443238977 0.93541556342623 1.28135673155347 1.18990772352639 0.512167173842551 1.74675436350333 1.45569206067029 0.884434147619286 0.781171063267639 1.03298195722283 1.09135232370315 0.797661695303904 0.998964726053884 1.08126987243908 1.07037233257851 1.13136042711311 0.197925584300232 0.198679961721745 0.198250895997537 0.208560149687782 0.198406822412256 0.210138729934159 0.193360838489113 0.204342708046813 0.195334484771863 0.198513152844024 0.199002742887105 0.197203021903723 0.200990000724569 0.204811811729567 0.204601967966409 0.195129361790472 0.195815143503022 0.196741562137471 0.201366952131775 3 3|0 -|/ 5816967 5817678 5817338.8 5816678 5818504 - gene protein_coding_gene FALSE TRUE AT3G17060.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G19730.1); similar to pectinesterase family protein [Brassica oleracea] (GB:ABD65006.1); similar to Os01g0743200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044216.1); similar to Os03g0309400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049912.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.204101917953166 -1.60180205179781 0.137807603075475 1 0.5469958253571 2.08940558537656 -0.204101917953166 0.162186946810665
AT2G18790_at 7.36361514952649 7.32423968474732 7.23414381395918 7.25416503966981 7.54986448994964 7.1188986956289 7.72273890679022 7.30186168027945 8.20922954022576 8.28420005230191 8.31023383046125 8.05824630900029 8.17922750421377 7.69872646970115 8.04066469885678 8.05702146529155 7.99173274840525 7.76912142631918 8.11788607471127 0.169622051949616 0.166081051066652 0.171044399741469 0.169165220514366 0.166081051066652 0.182527525335934 0.170871277739312 0.170520744271315 0.187069142660197 0.169900310794131 0.166081051066652 0.167479358209476 0.167137604261108 0.172065099981714 0.170487608935400 0.166081051066652 0.192083726793280 0.167271378443398 0.166526238187547 2 2 + 8150392 8151176 8150799.909 8146963 8151512 + gene protein_coding_gene FALSE TRUE AT2G18790.1 PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ signal transducer Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. Identical to Phytochrome B (PHYB) [Arabidopsis Thaliana] (GB:P14713;GB:Q6S4P0); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to phytochrome B [Cleome hassleriana] (GB:AAW56607.1); similar to Phytochrome B (GB:P34094); similar to Phytochrome B (GB:P29130); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.164747964041240 -1.60150015026996 0.137874546792444 1 0.546606173467684 15.4671377803743 -0.164747964041240 0.10452565190936
AT1G60430_at 5.47326569220515 5.99605007853065 5.94819499471952 5.7777995969827 7.18317879091577 6.3424840790064 6.22741204319419 6.59232955359715 5.86415289898416 5.5028604043531 5.71838335914908 5.91100479274668 6.30873382680188 6.03606297306687 4.897952879448 5.55997351447185 5.63837112684928 6.00889821429649 5.30535962316638 0.233736824128853 0.226040254776406 0.240419991695943 0.240918561516739 0.249459741469178 0.240989856612306 0.226040254776406 0.231150480677813 0.231244094315448 0.226040254776406 0.228519695781951 0.232307152111764 0.230159334057064 0.236852599451558 0.227955722980821 0.230501986723595 0.253398825889188 0.231440251713357 0.230747549729465 1 1 - 22268463 22269085 22268798.273 22268050 22269703 - gene protein_coding_gene FALSE TRUE AT1G60430.1|AT1G60430.2 ARPC3 (actin-related protein C3); structural molecule|ARPC3 (actin-related protein C3) similar to ARP2/3 complex, 21 kDa p21-Arc subunit [Medicago truncatula] (GB:ABE78338.1); contains InterPro domain ARP2/3 complex, 21 kDa p21-Arc subunit; (InterPro:IPR007204) 0.221557483605100 1.60139525661117 0.137897812633138 1 0.546470801591055 11.8512794676548 0.221557483605100 0.184955728677690
AT1G71080_at 7.60513732145373 7.78844956740186 7.46280112818525 7.8088113006134 8.19772759256172 7.95043510975937 7.28518389682765 7.49917839962316 7.08078342970806 7.5042619932455 7.2701401399799 7.0051006358024 7.31058117060808 7.58487415849426 7.14580956506723 7.36869198352378 7.25490568282838 7.34903555164822 7.27170571743174 0.169587906940086 0.174218877913787 0.173329668789698 0.173124043274812 0.173799379159898 0.169167070509924 0.180080664687415 0.1721037270187 0.178780878626488 0.173190670779222 0.179608090941736 0.173632333062151 0.172109570669234 0.179568391272637 0.172508448571294 0.173996598916895 0.180691743443204 0.180895093573023 0.174379260798066 1 1|0 -|/ 26813708 26814804 26814254 26813503 26815504 - gene protein_coding_gene FALSE TRUE AT1G71080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38050.1); similar to hypothetical protein DDBDRAFT_0192009 [Dictyostelium discoideum AX4] (GB:XP_629009.1); similar to Os01g0507500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043153.1); contains domain FAMILY NOT NAMED (PTHR15970); contains domain gb def: Hypothetical protein F23N20.7 (At1g71080/F23N20_7) (PTHR15970:SF2) 0.155507566992802 1.60125910895178 0.137928015889001 1 0.546295102192599 14.9855785767812 0.155507566992802 0.0882873333372906
AT4G27290_at 1.05322653476359 1.03772902005145 0.912576126357235 1.23061860982687 0.908504491036817 1.16537761300427 0.804274021119036 1.05135961982991 1.57126464324123 1.43578910617497 0.803344465406946 0.89726804220595 0.803798482737749 0.735665313186712 1.11014253988485 0.851276246443673 1.46280769877148 1.00469915970128 0.987211148007614 0.149596485351195 0.147913794071356 0.145339427160232 0.160821468803829 0.146477892915281 0.152597769079879 0.154242755228907 0.149238812125240 0.163923793276974 0.151134496242177 0.154242455769263 0.146030239019916 0.146173320086900 0.151678633389537 0.149702473396695 0.153413821964895 0.155020046115629 0.1593139361366 0.166843006059162 4 4|0 +|/ 13668445 13669155 13668841.3 13666287 13669208 + gene protein_coding_gene FALSE TRUE AT4G27290.1 S-locus protein kinase, putative similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G27300.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82224.1); similar to receptor kinase 5 [Brassica rapa] (GB:BAB69683.1); similar to EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like; Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE86763.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.152587238908488 -1.60123299172180 0.137933810450191 1 0.546261398744419 2.16548169250712 -0.152587238908488 0.0827096816672345
AT3G02220_at 7.7015579420835 7.71355221179713 7.34467177779296 7.59627373706896 7.98954488110904 7.48552052193563 7.73433047078342 7.56184804581035 7.27651697326131 6.93746457303162 6.62276905515848 7.10005308060953 6.65644157286332 6.86731102763097 7.0885509950537 6.67722598556614 6.66850972260304 6.67040925663373 6.92552434805173 0.166880634994021 0.16913136441158 0.169108005672273 0.163873871528267 0.175399829049333 0.178547115361402 0.162647194245294 0.174046350378476 0.160600403477578 0.157273248968413 0.162300570174029 0.161086512083051 0.17278844498069 0.162354090524224 0.167451731215157 0.162262308469295 0.169338842605145 0.166380263225639 0.168223384022291 3 3|0 -|/ 412307 413341 412857.667 412076 413641 - gene protein_coding_gene FALSE TRUE AT3G02220.1 similar to hypothetical protein [Cleome spinosa] (GB:ABD96929.1); contains domain SUBFAMILY NOT NAMED (PTHR22876:SF1); contains domain FAMILY NOT NAMED (PTHR22876) -0.163206282954319 -1.60122534530903 0.137935506980227 1 0.546251531354676 14.5611178494458 -0.163206282954319 0.101975777413834
AT4G18350_at 1.09763384945978 1.13421524303351 0.608232406311367 0.710831876230913 0.667858492366205 0.388776797667991 0.863470824875326 1.00075543893391 0.938895020649627 0.81337150834986 0.683911613009235 1.19023229943625 0.702243635311854 1.17519994057242 0.900087733963406 1.01403099075645 1.26151222359758 1.12146995603320 0.821944956996256 0.214401260667821 0.208457091293021 0.213255652090368 0.208457091293021 0.208457091293021 0.22060263035883 0.21535626606835 0.214206224801334 0.226659096323625 0.215639886663033 0.209237756902127 0.213664460754675 0.220961210185251 0.220152844037177 0.214509675820758 0.219848444712862 0.211034235435901 0.213555101515909 0.215005014147575 4 4 + 10143841 10144375 10144077.364 10142661 10144456 + gene protein_coding_gene FALSE TRUE AT4G18350.1 NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to 9-cis-epoxycarotenoid dioxygenase 2 [Citrus sinensis] (GB:AAY89371.1); similar to neoxanthin cleavage enzyme [Vigna unguiculata] (GB:BAB11932.1); similar to 9-cis-epoxycarotenoid dioxygenase 5 [Citrus clementina] (GB:ABC26010.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) -0.141039196089190 -1.60089281190767 0.138009304813515 1 0.545822436976569 1.74105013831836 -0.141039196089190 0.0570289316263647
AT3G24350_at 7.51588007011952 7.93528372063829 7.12061391002281 7.60973005913836 7.574901910178 7.51130108909772 7.35949308014283 7.6653996159347 6.56363121199593 6.45899973379567 7.2141377872036 7.30636501927358 6.56160068515481 7.05828150345197 7.58573067127803 6.37412431456777 6.31731751432048 6.74500403591415 6.10747150145215 0.261001404410597 0.261483498656200 0.275571903458909 0.267121458855245 0.261701419203625 0.274261057545611 0.261001404410597 0.268663732644765 0.284889412672279 0.261001404410597 0.263434836275559 0.261001404410597 0.268818500798471 0.270826108073891 0.261001404410597 0.261193064881370 0.277050398823321 0.272322069207241 0.261001404410597 3 3|0 +|/ 8838586 8839373 8838920.8 8837653 8839589 + gene protein_coding_gene FALSE TRUE AT3G24350.1 SYP32 (syntaxin 32); t-SNARE member of Glycoside Hydrolase Family 17 Identical to Syntaxin-32 (AtSYP32) (SYP32) [Arabidopsis Thaliana] (GB:Q9LK09); similar to SYP31 (T-SNARE SED 5), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G05760.1); similar to Os01g0179200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042197.1); similar to PREDICTED: similar to Syntaxin 5A [Strongylocentrotus purpuratus] (GB:XP_784377.2); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.176870998024009 1.60058616025974 0.138077389588796 1 0.545426786113273 14.1725859354808 0.176870998024009 0.123919453410420
AT4G26760_at 3.35588916465664 3.82205353003588 2.25742868351754 2.77935769010255 2.69680873232465 3.05938222122138 3.26698732768629 3.26579227016100 3.77738458381338 3.70338478592261 4.34324919582548 5.08330709824105 3.68243746042833 4.21652521375783 5.09141838449789 3.54593137292652 3.06672495490506 3.89712957494828 3.78986897856403 0.21985601936262 0.219496501905814 0.224348972029752 0.219496497226696 0.22280247974289 0.224634333694441 0.220212723559912 0.225699660876223 0.222686090881939 0.218568309162569 0.220582089490938 0.224534492865884 0.215952255556747 0.219914785153372 0.222617400961138 0.215952255556747 0.233121850290905 0.234662763118527 0.215952255556747 4 4|0 -|/ 13478906 13479493 13479174.9 13478598 13481814 - gene protein_coding_gene FALSE TRUE AT4G26760.1 microtubule associated protein (MAP65/ASE1) family protein similar to ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT5G55230.1); similar to 65kD microtubule associated protein [Daucus carota] (GB:CAD58680.1); similar to microtubule-associated protein MAP65-1c [Nicotiana tabacum] (GB:CAC17796.1); similar to microtubule-associated protein MAP65-1a [Nicotiana tabacum] (GB:CAC17794.1); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145) -0.185237641917727 -1.59992638757404 0.138223976739652 1 0.544575678661474 6.99932238065056 -0.185237641917727 0.136392994196411
AT4G09040_at 6.9526268413 7.03957157738636 6.15690077353404 6.21479025058258 6.7749180567594 6.99203209032523 7.42220249175051 7.5869940782588 5.65198884144558 6.61685167004082 6.91946085382739 7.28657392232201 7.30888034327828 7.23226655548512 7.90511140371979 7.45931278765424 7.08338515489178 6.57318229281176 6.4156004119757 0.289201606957003 0.292200683997802 0.285299652719244 0.301420452720283 0.290602554472924 0.308210744299924 0.282563046090862 0.285424915632631 0.312829503189155 0.296414858678818 0.287636539033060 0.283252305412707 0.281688512034839 0.284238684947911 0.309869469135977 0.281688512034839 0.317886690107084 0.281688512034839 0.283820900025429 4 4 - 5796750 5797142 5797004.833 5794527 5797372 - gene protein_coding_gene FALSE TRUE AT4G09040.1|AT4G09040.2 RNA recognition motif (RRM)-containing protein similar to 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative [Arabidopsis thaliana] (TAIR:AT2G35410.1); similar to Os08g0483200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062073.1); similar to RNA-binding re (GB:ABE85149.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.138593117693909 1.59989490318394 0.138230975306982 1 0.544535068901786 13.6170888393552 0.138593117693909 0.0505145790701097
AT2G42340_at 1.4231185904897 1.17806142319940 1.25530114710181 1.68188610363567 1.30080066255163 1.16144797159231 1.03716854919037 1.51138369603244 1.67270779395784 1.52717941733417 0.901053452141227 0.508684995624712 1.24953210799463 1.22761718625886 0.848124023217726 0.88045289266225 1.29930842502674 1.37454613375644 1.14345860817466 0.202363177362456 0.197229625118854 0.198027074365614 0.198905037834431 0.194821069347372 0.197757159212574 0.196645479272431 0.202623209115223 0.206999412184079 0.201985458369412 0.213084982054707 0.200176047659817 0.197974310439308 0.199337791289443 0.196481723762394 0.194320003307364 0.207479552810268 0.195690058521693 0.196448386493702 2 2 - 17642393 17643668 17642983.727 17642385 17644700 - gene protein_coding_gene FALSE TRUE AT2G42340.1 unknown protein -0.17459556562226 -1.59916306943509 0.138393740188382 1 0.543591253892931 2.56061943892794 -0.17459556562226 0.120683379235106
AT3G61430_at 11.9679723981680 12.2251330667958 12.6835685495831 12.7954489564185 12.9083178219339 12.8137428816249 13.1439320751105 13.2865841161858 12.7865946307900 12.8596176735549 13.0082068057274 12.7508938955948 13.1235566141357 12.9064201466670 12.6461326805154 12.8676597802015 13.0961547515718 13.0500281042835 12.735358337162 0.0759288722004285 0.0724729530961708 0.0733082008323299 0.0737353156294722 0.0722528347430152 0.0758842563028973 0.0744387223857164 0.0707327106086494 0.0807383030934962 0.0722827683374597 0.0731854447319987 0.0709348165750166 0.0722990753259176 0.075645082030476 0.0761744143940184 0.0707327106086494 0.0750294710000718 0.0714651695461926 0.0717998608721061 3 3|0 +|/ 22744924 22746030 22745463.1 22744284 22746310 + gene protein_coding_gene FALSE TRUE AT3G61430.1|AT3G61430.2 PIP1A (plasma membrane intrinsic protein 1;1); water channel|PIP1A (plasma membrane intrinsic protein 1;1) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. Identical to Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a) (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) (PIP1.1) [Arabidopsis Thaliana] (GB:P61837;GB:P43285;GB:Q8L9H0;GB:Q9LDT6); similar to PIP1B (plasma membrane intrinsic protein 1,2), water channel [Arabidopsis thaliana] (TAIR:AT2G45960.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.140819427579964 1.59914203577419 0.138398420710287 1 0.543564131410749 25.5905817221473 0.140819427579964 0.0568565189621526
AT2G27375_at 0.360740358965421 0.723894119398328 0.667579256110992 0.516299424066792 0.748565890350826 0.547876132817881 0.418622978312717 0.801182768197721 0.652426312050204 1.08478786660760 0.634583301529911 0.618520250908057 0.397291716820305 0.599963337649052 0.651452020586701 0.622774208864422 0.586601509376248 0.894217683058566 1.24655212307492 0.198892827275661 0.192836913152464 0.192836913152464 0.194550642091182 0.198200784440794 0.192836913152464 0.195350241603119 0.196612558056200 0.200112104802622 0.196196669776573 0.202571879220767 0.199567193391812 0.207416441364041 0.197581547225986 0.205266696013989 0.197166834418004 0.203990928699695 0.197953972274232 0.195989854567529 2 2|0 +|/ 11717791 11718376 11718066.2 11717752 11718402 + gene protein_coding_gene FALSE TRUE AT2G27375.1 similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09490.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.162471572013504 -1.59897550188283 0.138435483630035 1 0.543349396690759 1.40822725144928 -0.162471572013504 0.10111408120553
AT1G76640_at 1.30588748390307 1.19358026957678 1.20179887101684 1.46748174128589 1.07916817202211 1.19362748034221 1.15796676429668 1.18024648105636 1.45402383289241 1.56944401818417 1.48531319078501 0.630555935255503 1.46475593207739 1.05475657199282 1.35473158430532 1.09993104652656 1.30550055520361 1.41244741975581 1.57088148276585 0.190106694339394 0.186873526231316 0.194003926631608 0.197442229976551 0.196266762307676 0.190968695499159 0.192852234045354 0.192825402032864 0.196466841052602 0.190628572128871 0.194937947064948 0.188438820629742 0.193808950097816 0.200176700758635 0.192893798992048 0.187032245284294 0.201815830834293 0.189438429114646 0.188087166735055 1 1 - 28770227 28770669 28770493.818 28770218 28770697 - gene protein_coding_gene FALSE TRUE AT1G76640.1 calmodulin-related protein, putative similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G76650.1); similar to regulator of gene silencing [Nicotiana tabacum] (GB:AAK11255.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.139675966000591 -1.59885677489223 0.138461912222315 1 0.543196313890251 2.60119406165511 -0.139675966000591 0.0538413128273541
AT3G23325_at 8.4074370307926 9.17794808736582 8.7202918057768 8.86565649370341 9.71855651156877 8.63937027468012 9.20948417091747 9.29629499836375 8.59660770636668 8.13734986983963 9.20041116151164 9.4103635240643 8.88663429828226 9.27068615639904 8.75398272609429 9.2273707501098 8.75907381944826 8.46347799269258 8.5914856323503 0.198691832297756 0.186266777802609 0.192418279523816 0.205833727742079 0.187245004879331 0.197126622273824 0.1926633615158 0.194093295884371 0.225023502912348 0.192389389048504 0.192338534323002 0.186114613815934 0.188471422716525 0.188255506123103 0.203854375907136 0.187768789995691 0.193181055539794 0.198899042366603 0.186611999810869 3 3 + 8346025 8346830 8346308.5 8345778 8347069 + gene protein_coding_gene FALSE TRUE AT3G23325.1 splicing factor, putative Identical to Protein At3g23325 [Arabidopsis Thaliana] (GB:Q9LW64); similar to pre-mRNA splicing factor 10 kDa subunit, putative [Arabidopsis thaliana] (TAIR:AT4G14342.1); similar to Os08g0444100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061922.1); similar to Splicing factor 3B subunit 10 [Medicago truncatula] (GB:ABE90187.1); contains InterPro domain Splicing factor 3B subunit 10; (InterPro:IPR009846) 0.258931675147713 1.59848476399364 0.138544750465284 1 0.542716698028106 17.7235371498598 0.258931675147713 0.231337079303888
AT1G09000_at 1.01175303049022 1.41814314584594 1.69629535114893 1.49405810549616 1.14163245030238 1.60076665535209 1.63397067442868 1.3578826540255 0.928504812114563 1.39539097305546 1.30128590561882 1.33734642423035 1.37598561657771 1.09515323310845 1.53792363192026 1.15745059023496 1.54149290396717 1.49380242250113 1.07459334484321 0.209718606039756 0.212265529320453 0.215296313824215 0.217146185093814 0.205591129888666 0.207468393855918 0.210126713118768 0.208852909686415 0.228378872511863 0.208642178075459 0.205591129888666 0.210083938894218 0.215307844397750 0.211379783619799 0.215507807881217 0.205591129888666 0.208755698646557 0.214657901633440 0.212981956414887 1 1|0 +|/ 2892055 2893281 2892807.857 2891040 2895185 + gene protein_coding_gene FALSE TRUE AT1G09000.1 ANP1 (NPK1-RELATED PROTEIN KINASE 1S); kinase NPK1-related protein kinase 1S Identical to Mitogen-activated protein kinase kinase kinase ANP1 (EC 2.7.11.25) (Arabidopsis NPK1-related kinase 1) (ANP1) [Arabidopsis Thaliana] (GB:O22040;GB:O04030;GB:O22039;GB:Q8GZ05); similar to ANP2 (Arabidopsis NPK1-related protein kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G54960.1); similar to mitogen-activated protein kinase kinase kinase [Vitis vinifera] (GB:AAS19278.1); similar to protein kinase [Nicotiana tabacum] (GB:BAA05648.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.174988072696375 1.59778201259439 0.138701355893549 1 0.541810852815935 2.66325515889837 0.174988072696375 0.121518590938961
AT2G23660_at 3.1780537004228 3.29077287810292 3.72488739785561 3.71471875496198 2.8256823078999 3.44601037793063 3.00144228162689 3.37168193629606 3.62418624307465 3.0769171295524 3.49971982286163 3.73262796432007 3.88935688203757 3.72261037342215 3.48930441968283 3.35222992608375 3.93245382520049 3.72447201728941 3.88468481038329 0.248634532828747 0.250928299339297 0.23649181264989 0.247015672373619 0.231612259450599 0.25026705240768 0.235011101424684 0.237002050968411 0.248101944683045 0.245251272865077 0.239019917700744 0.228780770450557 0.236069862310013 0.239668333446652 0.235907417206298 0.236349791782145 0.235114416994650 0.235610298313798 0.238176691388003 2 2 - 10067359 10067883 10067654.091 10067322 10068902 - gene protein_coding_gene FALSE TRUE AT2G23660.1 LOB domain family protein / lateral organ boundaries domain family protein (LBD10) Identical to Putative LOB domain-containing protein 10 (LBD10) [Arabidopsis Thaliana] (GB:O64836); similar to ASL1 (LATERAL ORGAN BOUNDARIES domain gene 36) [Arabidopsis thaliana] (TAIR:AT5G66870.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAR00592.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.178293926704328 1.59774157646370 0.138710371661624 1 0.541758737827908 6.91737768681994 0.178293926704328 0.126542290595717
AT3G07530_at 3.29090239205274 3.41138683605113 3.52456885861599 3.42179215183442 3.60816324988154 3.76765989537161 3.31681870445568 3.31532612111730 3.86611135105574 3.2486475923166 3.1584033953088 2.84653633320455 3.38114542120334 2.94483504687128 2.93229260310394 2.98044288783573 3.49267315061191 3.03847938772945 3.72560902106901 0.227061515196226 0.22451817258796 0.228768504086221 0.228095880614661 0.226721447293282 0.233622664213480 0.231585692962277 0.229032152938863 0.22526328798363 0.234956849217251 0.227040417769701 0.226216859664526 0.229283509349693 0.231183856219996 0.236026522459473 0.22451817258796 0.237369093365607 0.23048300348314 0.226681577228842 3 0|3 /|+ 2403638 2404242 2403990.125 2400799 2404286 + gene protein_coding_gene FALSE TRUE AT3G07530.1 similar to ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II), catalytic [Arabidopsis thaliana] (TAIR:AT2G01730.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94914.1); contains domain CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (PTHR11203); contains domain UNCHARACTERIZED (PTHR11203:SF2); contains domain Metallo-hydrolase/oxidoreductase (SSF56281) -0.134833717203407 -1.59767628042824 0.138724931360606 1 0.541674584472789 6.81223078436292 -0.134833717203407 0.0388972687071967
AT4G14385_at 5.11154726590446 5.07974931730267 5.01291862827511 5.19405900893637 5.82574934240644 5.03462681372802 5.38834392178213 5.21529868252039 4.91290008527032 5.5212780074748 4.8151317569263 5.11606105485855 4.84402070964182 5.12323756164084 4.70320518538504 5.15215293978699 5.16498795434556 5.00952681513791 5.88375236012176 0.206139168386948 0.205684080527346 0.207680830092013 0.210012986089266 0.195867434718130 0.203455339478337 0.203253034553433 0.204685620266480 0.210175921170046 0.20548331427396 0.195867434718130 0.196571035794785 0.202162332878813 0.210400193948783 0.195867434718130 0.199231935079597 0.196414232290422 0.204227812363889 0.205674099361296 4 4|0 -|/ 8287141 8288580 8287883.667 8287007 8288796 - gene protein_coding_gene FALSE TRUE AT4G14385.1|AT4G14385.2|AT4G14385.3 similar to Os01g0233400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042511.1); similar to conserved hypothetical protein [Aedes aegypti] (GB:EAT35664.1); similar to Os12g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066614.1); contains domain gb def: Hypothetical protein At4g14385 (Hypothetical protein At4g14385/FCAALL.166) (PTHR13476:SF1); contains domain FAMILY NOT NAMED (PTHR13476)|similar to Os01g0233400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042511.1); similar to Os12g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066614.1); similar to Eaf6 CG12756-PA [Drosophila melanogaster] (GB:NP_647981.1); contains domain gb def: Hypothetical protein At4g14385 (Hypothetical protein At4g14385/FCAALL.166) (PTHR13476:SF1); contains domain FAMILY NOT NAMED (PTHR13476) -0.190083001140590 -1.59747977455573 0.138768756312340 1 0.541421340403482 10.4479619466924 -0.190083001140590 0.143712751138061
AT2G20595_at 2.01707633074548 2.60729072405654 2.15845765964257 2.36688046774753 1.91932346494392 2.01327398481166 1.96509052848832 2.34198924330889 2.51503416722098 2.00788599616307 1.86450189106105 2.10576611253145 2.36607427891782 2.09672191883113 2.01830185438932 2.35929924841174 1.96187755258686 2.24009423551605 2.57488175399112 0.216928253435869 0.218988009039988 0.216630010283272 0.213191034297788 0.21640850945333 0.218219016474781 0.212297347379337 0.212297347379337 0.215833711935428 0.212297347379337 0.215308958065677 0.220144991108329 0.212297347379337 0.214545298361276 0.223462765087359 0.218823010505465 0.222022868391109 0.21548414934201 0.223962689793810 2 2|0 -|/ 8878904 8879052 8878984.778 8878632 8879142 - gene protein_coding_gene FALSE TRUE AT2G20595.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20619.1) -0.178866074145551 -1.59724501619086 0.138821128330000 1 0.541118822950791 4.41992960496265 -0.178866074145551 0.127482975190024
AT3G62500_at 3.39667060627831 3.13011113803138 2.99034080888295 2.67487391805409 3.37439937867498 3.24741892315884 3.24564959076288 2.9882773273865 2.67215937920616 3.53192424698286 2.99636213906878 3.05162557074641 3.16150246262469 2.97835576904111 2.78117008736878 3.23120335627215 3.19333756321095 2.78524903361128 3.43430557823971 0.184428747805407 0.183056702117165 0.184740052458335 0.182957263311583 0.184401526986896 0.207343468526249 0.189800993036634 0.193061789158509 0.203480894521058 0.182508989602208 0.183248299868979 0.188319032039051 0.1824586365323 0.190013825229695 0.197121638056136 0.184033787326944 0.183218745107634 0.191230647483234 0.182331210268866 3 0|3 /|+ 23132148 23133172 23132737.4 23131399 23133198 + gene protein_coding_gene FALSE TRUE AT3G62500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61740.2); similar to Os01g0219200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042418.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81354.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971) -0.154432281077639 -1.59703925243150 0.138867046255686 1 0.54085369036615 6.24854128601337 -0.154432281077639 0.0870342517381602
AT1G78710_at 1.34306858671309 1.61135448181287 2.21291626578691 2.07530082956738 1.72845494073875 2.09648028230475 1.58310522867864 1.82340453922329 2.13495808000406 1.64547748092548 1.64332303200658 1.39323664055619 1.74621314415548 1.89080710735591 1.99276035934676 1.57368292516781 1.71816457541475 1.82871641201162 1.76060217990481 0.222627941726639 0.224850723038829 0.220778230396496 0.224191551457747 0.220081159955499 0.230291784251117 0.220081159955499 0.229482410078463 0.233325076811648 0.224530236837366 0.225708909587944 0.226727210477047 0.221009212830762 0.220541073145513 0.222090959523684 0.220081159955499 0.225651236434742 0.223915668605073 0.230943593892045 1 1|0 +|/ 29608730 29609422 29609127.1 29607601 29609450 + gene protein_coding_gene FALSE TRUE AT1G78710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31110.2); similar to Os01g0652100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043736.1); similar to Protein of unknown function DUF231, plant [Medicago truncatula] (GB:ABE82889.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.157202657358124 1.59666101022139 0.138951489034459 1 0.540366366579164 3.59444844674321 0.157202657358124 0.0922402040799005
AT2G43260_at 4.61470973864681 5.80416446954284 4.54923105635118 4.8731091916174 5.21998205380735 5.48631304160677 4.5189811695575 5.3094851089579 5.55086415611288 4.7106433958592 4.41503091753736 4.39672103222165 4.43052235584052 4.71306669116401 4.6546620478189 4.59424288268051 4.47361919941644 4.73416889515085 4.98861038109178 0.240391885542641 0.239030006483787 0.255695694719422 0.244116831273721 0.236167128667313 0.247682086189515 0.241521252703561 0.236167128667313 0.249921316294321 0.236584324774037 0.236167128667313 0.236167128667313 0.24264150443015 0.240326807226264 0.2446378071182 0.238782484804078 0.239033242051984 0.240533969153351 0.239125164288992 2 2 - 17990908 17991349 17991100.545 17990768 17992181 - gene protein_coding_gene FALSE TRUE AT2G43260.1 F-box family protein / S locus-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43445.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.280772338728216 -1.59578381566176 0.139147496905421 1 0.539236458008156 9.86443542730267 -0.280772338728216 0.257585822981365
AT4G17070_at 6.4725950313635 6.37465267906535 6.17771787247337 6.33081875373955 6.11461532324188 5.1647947572526 3.90495441188069 4.21115512841663 5.70124796124909 4.60485501902542 4.88265653684148 5.04398800837787 4.05545401451196 4.67464928684028 4.72917479697224 5.05591857972943 4.15434387448595 4.80722078800125 4.55807445920043 0.24158997918234 0.229960712641082 0.233796886282163 0.225675146613687 0.222473375134725 0.247504256988692 0.227270578257817 0.222074234663729 0.231826558449968 0.225302209112515 0.222074234663729 0.224089596397060 0.222074234663729 0.245540871074861 0.225452192991468 0.223518777377580 0.241810736536981 0.225203384242443 0.225749841538334 4 4|0 -|/ 9595612 9597344 9596171.7 9595404 9598191 - gene protein_coding_gene FALSE TRUE AT4G17070.1 similar to Os03g0100300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048644.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.213423643278524 1.59547337159675 0.139216923375956 1 0.538836664411319 10.4089887691184 0.213423643278524 0.175541806822457
AT3G04410_at 1.24236554288241 1.18413716903152 1.32249607776117 1.19227051439203 0.836865037618037 1.25829950162618 1.12693410647349 1.25479990049844 1.65282779482941 1.20142262712301 1.22234742622914 1.14443254447074 1.18416206884365 0.891573282704768 1.43607797375947 1.05401225877303 0.880215271271427 1.20893097780137 1.28451112270672 0.193658244435094 0.188582488615615 0.190081315494709 0.192011273330902 0.200107759388886 0.193961502903738 0.193193907937619 0.193339220232429 0.196043515550984 0.203553812708392 0.193959118302244 0.190041708936559 0.1941487097987 0.193688307028624 0.188729402638165 0.190117599263756 0.204170639440639 0.194096920724357 0.192790177556626 3 3|0 +|/ 1168860 1169179 1168990 1168843 1169211 + gene protein_coding_gene FALSE TRUE AT3G04410.1 transcription factor similar to ANAC004 (Arabidopsis NAC domain containing protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G02230.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.150722301471729 -1.59537691663509 0.139238500375036 1 0.538712457857373 2.43092405980278 -0.150722301471729 0.0801125178871702
AT2G41970_at 2.59741408986042 2.56387527065613 2.45247055663522 2.76825804332251 2.23162387861393 2.31435565801548 2.43212007138427 2.39678658880229 2.53713582403937 2.72755783287051 2.22317318639446 2.50332471093336 2.58078938415436 2.37835325280765 2.56212729092230 2.34460250675789 2.45622216264932 2.56048627759353 2.76456001032994 0.186659612609592 0.185768055459387 0.197939495618337 0.189527666483915 0.183918518519316 0.190945912460198 0.185839835936245 0.187382152316516 0.196969250178486 0.199261340817883 0.189216390533066 0.196319035307662 0.186865627343355 0.185494116365834 0.189240264014059 0.187445569592850 0.183918518519316 0.193378650589056 0.184398798041817 2 2|0 -|/ 17527620 17528516 17528065.778 17527457 17529834 - gene protein_coding_gene FALSE TRUE AT2G41970.1 protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT3G59350.3); similar to protein kinase 2 [Nicotiana tabacum] (GB:CAE55204.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.140577506791161 -1.59526647530363 0.139263209736948 1 0.538570246255603 5.03338938746455 -0.140577506791161 0.0571184191538177
AT4G15640_at 2.70405832780764 3.30291340948375 2.70699239823957 3.19712283293673 2.63148378788872 2.88355631634993 3.40444561924284 3.66256530439718 2.28193082688145 2.70094443804825 2.73691638349002 2.89281680734352 2.46501110059336 2.49163781420336 3.12218015541378 2.41732927184853 2.63499154920905 2.66775096263051 2.96788104751238 0.223747039858638 0.229890880984030 0.219440785752404 0.221216771792124 0.219902164961843 0.221914937587440 0.228387967315129 0.228258256834958 0.228493271011024 0.222082683068586 0.217476420866014 0.217476420866014 0.230013484481598 0.222017898799844 0.217730291986805 0.217476420866014 0.224306614178089 0.217476420866014 0.227824430560471 4 4|0 -|/ 8919243 8920528 8919835.8 8918983 8921928 - gene protein_coding_gene FALSE TRUE AT4G15640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21465.1); similar to adenyl cyclase [Nicotiana tabacum] (GB:AAB87670.1) -0.192689839967481 -1.59515046196805 0.139289169888863 1 0.538420866000914 5.72605792941273 -0.192689839967481 0.14775884956885
AT1G03445_at 2.46256592005006 2.57964306659311 2.50172128465084 2.77652543935272 2.16404455705332 2.22893425028941 3.05730401302950 2.33121523334969 3.23020775518464 2.98631307575211 2.63190826112106 2.66406770760421 2.52758702023331 2.75499721486775 2.83367608397409 2.96373246361466 3.11682585923704 2.97560236926682 2.74710960474967 0.227401061285611 0.221572946857003 0.217296341723188 0.223405905124355 0.225510199594779 0.217296341723188 0.232152869584563 0.221368300963456 0.219976976714391 0.229598675199194 0.217296341723188 0.222155142164021 0.223941380761377 0.22475083673504 0.226464239410221 0.224789425584098 0.21975652916389 0.248580856996426 0.23057552976304 1 0|1 /|- 854662 855521 855063.111 854409 859701 - gene protein_coding_gene FALSE TRUE AT1G03445.1 BSU1 (BRASSINOSTEROID INSENSITIVE 1 suppressor 1); protein serine/threonine phosphatase Arabidopsis thaliana BSU1 Ser/Thr phosphatase Identical to Serine/threonine-protein phosphatase BSU1 (EC 3.1.3.16) (Bri1 suppressor protein 1) (BSU1) [Arabidopsis Thaliana] (GB:Q9LR78); similar to kelch repeat-containing serine/threonine phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT4G03080.1); similar to kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97885.1); similar to Os05g0144400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054625.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Kelch repeat; (InterPro:IPR006652); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.184601432412312 -1.594785088364 0.139370956845135 1 0.537950447992957 5.41095743773875 -0.184601432412312 0.136333686593018
AT2G33020_at 2.43407686860042 2.14928324812993 2.88944117860469 2.61619642252814 2.02102323774048 2.17903270342003 1.78364140923724 1.75620702429607 2.30963373864717 2.14295091751238 2.24291647369735 2.06179470133843 2.04959471761955 2.06885573383081 2.21877651166272 1.96010785322985 2.3596470472832 2.13154553256943 2.25904496087095 0.209325872564818 0.220318346900468 0.227964869832481 0.227217624959347 0.214976459462164 0.219984117775428 0.21442495926631 0.210239900979560 0.214189322313243 0.207736228302728 0.217257525253386 0.216096249622267 0.215850434600544 0.219295506450666 0.211227244280744 0.211738038141972 0.220285528868584 0.214929678346057 0.218713314101274 2 2 - 14020954 14021475 14021204.455 14020951 14023593 - gene protein_coding_gene FALSE TRUE AT2G33020.1 leucine-rich repeat family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT2G32680.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.147533098533915 1.5942177405165 0.139498038294140 1 0.537220113983549 4.41554510844334 0.147533098533915 0.0737240774818783
AT2G27500_at 5.88703902041089 6.21930249247310 7.18114268719966 6.89082919953407 7.96138586257652 7.13125437422864 7.22001140610014 6.80555319557514 6.06258608203654 6.11835181207536 5.83566636966607 5.16729713844224 5.96175435437177 6.4080755937179 4.44605508869178 6.9029506812887 6.80452880197993 5.6744142666837 6.5040428404046 0.225689103044259 0.219550668737456 0.219550668737456 0.222522382877436 0.229210524628076 0.223554281433929 0.220968738271403 0.231423589141211 0.240889459851931 0.219662726163690 0.231014300607925 0.222424173272139 0.226293759216694 0.219851890265483 0.24740809562911 0.220522299190648 0.237102103988128 0.229391713562905 0.219550668737456 2 2 - 11759467 11760200 11759937.545 11759248 11761106 - gene protein_coding_gene FALSE TRUE AT2G27500.1|AT2G27500.2|AT2G27500.3 glycosyl hydrolase family 17 protein|hydrolase, hydrolyzing O-glycosyl compounds Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to H0717B12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67163.1); similar to Os01g0860800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044874.1); similar to OSJNBa0073L04.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40655.2); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490)|Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to H0717B12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67163.1); similar to Os01g0860800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044874.1); similar to Os04g0412300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052739.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490)|Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to H0717B12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67163.1); similar to OSJNBa0073L04.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40655.2); similar to Os04g0412300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052739.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.214971188797334 1.59403975893937 0.139537925736023 1 0.536991033824357 12.9762746289427 0.214971188797334 0.177798388941873
AT1G66240_at 10.2259194451351 10.2167025655505 10.4621161015861 10.4209364282806 10.1976696242657 9.91477968895567 10.0966838243393 10.1231690447936 10.2625289747471 10.3878819987649 10.5028914640364 10.5002558547649 10.4297988349029 10.4156968358616 10.3475123899176 10.5451936368652 10.5386110758814 10.4321497476008 10.1648202384862 0.0784740657139109 0.0801201348012063 0.078900243093703 0.0811229777384613 0.0807645075697716 0.0853880604218863 0.0829895011477797 0.0834933872862169 0.0947534678602793 0.085241871451527 0.0827477593058883 0.0800186688383195 0.0838181081768676 0.0784740657139109 0.080591655342093 0.080025457512765 0.0859001825775744 0.0851377821358824 0.0791819519499018 1 1|0 -|/ 24690168 24690959 24690631.875 24689921 24690995 - gene protein_coding_gene FALSE TRUE AT1G66240.1 ATX1; metal ion binding similar to CCH (COPPER CHAPERONE) [Arabidopsis thaliana] (TAIR:AT3G56240.1); similar to copper chaperone [Populus alba x Populus tremula var. glandulosa] (GB:AAT12488.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.137763366731758 1.59347132788091 0.139665383892829 1 0.536259506730203 20.5751258240191 0.137763366731758 0.0497088485530851
AT4G16500_at 8.54911749167588 8.80590342802406 7.85225005421375 7.80362393654375 8.01313533284177 8.0823564489398 7.55945741384707 7.66741885910237 7.96840310307814 8.01926249085037 8.98669084576271 9.31477430287436 8.17756806973684 8.41725548794309 9.23499089014598 7.9724500223295 7.53938170242039 8.61076758966532 8.15712390240194 0.144859907917426 0.154482377409936 0.143273042484215 0.141945596892168 0.137556778021089 0.145603576312933 0.14433091938706 0.146264667029258 0.161073092153534 0.141779453291541 0.142175691987070 0.152034133441498 0.144478817316034 0.141916182867147 0.141295238292029 0.139029305639568 0.150260594332288 0.141699109937416 0.144554648063441 4 4 - 9301568 9301877 9301736.818 9301413 9302045 - gene protein_coding_gene FALSE TRUE AT4G16500.1 cysteine protease inhibitor family protein / cystatin family protein similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G47550.1); similar to cystatin domain containing protein [Brassica oleracea] (GB:ABD64972.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.137919421694357 1.59264905217339 0.139849942079079 1 0.535201572759169 16.3316568853002 0.137919421694357 0.0503796435906524
AT1G03820_at 3.49297081111742 3.77519788320701 2.74141271732536 2.89463274218989 3.24066599459755 2.82898647489096 4.10888547421541 3.90569563437467 2.52328736851643 4.42274117699227 4.40381965699053 4.36182623132559 4.21875586895123 4.73351710627665 4.94790946674308 4.0337714964444 5.57426679457575 4.26452715309372 3.11656032227901 0.227204897220095 0.234754080374854 0.242352252525375 0.234851568431847 0.232756019865094 0.226006391203359 0.220815879146752 0.225278504991230 0.243400449491828 0.231371787161339 0.229540700052571 0.220815879146752 0.225595089469719 0.232072120389180 0.227803753262762 0.230411806414878 0.24452135540547 0.225011391862954 0.235639937480268 1 1 - 960109 960567 960417.273 959868 960727 - gene protein_coding_gene FALSE TRUE AT1G03820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33850.1); similar to arabinogalactan-protein; AGP [Pyrus communis] (GB:AAB35283.1) 0.159419982029932 1.59246500445372 0.139891280555738 1 0.534964822320663 7.33430372202113 0.159419982029932 0.0969561258876342
AT1G54850_at 4.49181583132539 4.70034888721909 4.49714504103123 4.25867554945770 5.24093544874654 4.76997718257177 4.24525592082243 3.88122766391002 3.46748158832749 3.88399413643974 3.52234223012362 3.81412507446268 3.85372533599163 3.66474635220697 3.715259345202 3.95653544696622 4.18289753445109 3.18160463882661 3.91599723997653 0.231007706438169 0.234383662765010 0.234236801844995 0.233701463090078 0.23233765283192 0.247220277996812 0.234631902161160 0.237774481107731 0.233126600376295 0.239318222233101 0.232163661549867 0.236630400387039 0.230115433191143 0.230014897392054 0.234318789814279 0.233032612350619 0.240077025014105 0.234156471893059 0.235933841288139 1 1 + 20458857 20459551 20459074.364 20458056 20459887 + gene protein_coding_gene FALSE TRUE AT1G54850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54840.1); similar to heat shock protein-like protein [Cucumis melo] (GB:AAO45756.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.17130070141509 1.59243523774750 0.139897967385733 1 0.534926533325664 8.25678709881558 0.17130070141509 0.116689669596734
AT3G26890_at 8.70228083643009 8.69341948106135 8.82512421664066 8.52495309603318 9.20875190987204 9.00011957002829 8.54161363396202 8.39221476593337 9.3088987781919 9.52702165389596 8.81631446986264 8.59144681767138 9.0955643704149 8.95002161622517 8.45966204965032 9.40942786888383 9.22535471648128 8.71429039403833 9.67862283423886 0.120070684451653 0.113654472057296 0.112325787144073 0.114021523778656 0.11595002372186 0.116695609176407 0.116158904259042 0.116672527180867 0.113160604462703 0.115775001661775 0.1205528455546 0.116495142505267 0.115582463624428 0.116786013740837 0.116439186005142 0.112269405010258 0.119235935671641 0.116381634474543 0.119606144502891 3 3|0 -|/ 9908698 9910081 9909164.3 9908499 9912858 - gene protein_coding_gene FALSE TRUE AT3G26890.1|AT3G26890.2|AT3G26890.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41110.1); similar to Os09g0509400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063629.1); similar to Os08g0536100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062361.1); similar to unnamed protein product; gene_id:MEE6.18 unknown protein-related [Medicago truncatula] (GB:ABE89396.1); contains domain FAMILY NOT NAMED (PTHR13199); contains domain SUBFAMILY NOT NAMED (PTHR13199:SF3) -0.144866224370963 -1.59166417936261 0.140071276731599 1 0.533934865705679 17.9423637104180 -0.144866224370963 0.0683574027671745
AT2G11890_at 6.26420022338398 6.5447886431293 6.65966212850238 6.52812337339125 6.46919542769462 6.08060490181594 6.76776874785218 6.98750317845942 6.73638861780072 6.21674515177375 5.80497586410419 6.4104601802328 6.25096241701917 6.41191028065385 6.00546447111011 6.548557849605 6.29634331853177 6.27194341687399 6.123304975763 0.217797584433917 0.229926106259964 0.228979764424421 0.222098489570272 0.228294589769406 0.239558419113520 0.221035901765687 0.219064805937650 0.234486293736024 0.220361373811904 0.222493844810232 0.228739746062923 0.222125297721613 0.236596685872859 0.223253578178070 0.221242215891968 0.225024540538089 0.217797584433917 0.224940242456299 2 2 + 4810187 4810673 4810443.455 4809865 4811457 + gene protein_coding_gene FALSE TRUE AT2G11890.1|AT2G11890.2 adenylate cyclase similar to Adenylate cyclase [Medicago truncatula] (GB:ABE93300.1); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172)|similar to Adenylate cyclase [Medicago truncatula] (GB:ABE93299.1); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172) -0.157702215350653 -1.59162963143172 0.140079046415912 1 0.533890439811066 12.8421758979681 -0.157702215350653 0.094043407602299
AT3G11490_at 4.76686777624975 4.94336635373596 4.09524032237207 4.38182233364762 5.04227272888892 4.89394168106257 5.69539765760953 5.24087713592785 5.95578809813647 5.58147090950753 6.94289346290687 6.92196388282827 6.76351600167573 6.17502239577048 6.64492286780561 6.06250677805007 5.24140401441766 5.51152730740482 6.60713419263826 0.22440291146929 0.229356283277636 0.243631526334633 0.223121425274286 0.233808777756709 0.228147029715901 0.220605688911207 0.224310312464611 0.231539690935730 0.230124148968206 0.223289913497016 0.224451989934902 0.220605688911207 0.222600830252189 0.225401326354158 0.220930222662352 0.237866074030177 0.220605688911207 0.223794600239501 3 3 - 3617565 3618165 3617865.636 3617529 3619573 - gene protein_coding_gene FALSE TRUE AT3G11490.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT5G22400.1); similar to RhoGAP; Wiscott-Aldrich syndrome, C-terminal [Medicago truncatula] (GB:ABD32671.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.161734721145646 -1.59131875935821 0.140148977261326 1 0.533490708578277 11.0480235764959 -0.161734721145646 0.101184752849459
AT3G23550_at 3.49698888134418 3.53014724474515 4.33143475506518 4.50719757404348 3.32863434548769 3.48800033694635 1.72926791543990 2.34525397024407 3.64958268988056 3.11030776093485 2.2118097055739 3.49977777765193 2.46913565275535 2.75810104811913 2.40639120895366 2.98160523480264 2.17793492284045 2.54462977130069 3.53051922942839 0.222520500093395 0.223919806990710 0.238731926843667 0.232322283070914 0.222024977408113 0.232023128335296 0.224578729050217 0.236704074587310 0.236927655693328 0.222024977408113 0.222024977408113 0.222024977408113 0.222239717110340 0.226054704490070 0.226870972689220 0.226398481495252 0.224335107767408 0.222024977408113 0.228332676822555 3 3|0 -|/ 8448448 8449358 8448879.5 8448280 8450704 - gene protein_coding_gene FALSE TRUE AT3G23550.1 MATE efflux family protein similar to ALF5 (ABERRANT LATERAL ROOT FORMATION 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT3G23560.1); similar to hypothetical membrane protein-1 [Marchantia polymorpha] (GB:BAB71817.1); similar to Os07g0502200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059724.1); similar to Os07g0108200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058715.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.169719427555399 1.59130043623046 0.140153100015476 1 0.533467149433809 6.37527049057999 0.169719427555399 0.114377008432645
AT3G17730_at 2.78912208595244 2.89714671428038 2.54557087785782 2.76263373846848 2.40912950526766 2.79183358435445 2.64187243945390 3.19253351404017 3.27295743002568 3.01851477654815 2.99417443235443 3.25704745153013 3.29319480674915 2.86848303452711 2.95353037689790 2.82447945763279 2.83361536502075 3.15395201408054 3.0697779943861 0.226996139030342 0.229728230306282 0.229343016349544 0.228228271609615 0.224231257569849 0.223003436037692 0.228779973860490 0.232955593413545 0.227551851221817 0.233672917385269 0.223003436037692 0.223003436037692 0.233700231167524 0.228823838558281 0.227147589879712 0.224134745153847 0.233882083434539 0.225367942001992 0.224592593268242 3 0|3 /|+ 6064718 6065784 6065331.1 6064385 6065819 + gene protein_coding_gene FALSE TRUE AT3G17730.1 ANAC057 (Arabidopsis NAC domain containing protein 57); transcription factor similar to ANAC028 (Arabidopsis NAC domain containing protein 28), transcription factor [Arabidopsis thaliana] (TAIR:AT1G65910.1); similar to Os09g0552900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063877.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15294.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.175491939124417 -1.59118097138385 0.140179982544967 1 0.533313550233316 5.82509348296062 -0.175491939124417 0.123400915733181
AT1G04730_at 2.51139787469047 2.53473425901285 2.3603774733559 2.68752941522301 1.74988445518566 2.10239939017969 2.10199069028380 2.72906586699444 2.21278269521174 2.64137522165645 2.23380576748711 2.62799845298854 2.21660135803527 1.96682414530837 2.61847202999693 2.06345645412973 1.76766206698061 2.55298327933189 2.28812685908731 0.232075037332135 0.227336025205833 0.236330999599714 0.236334938280281 0.226753543594229 0.226483760210143 0.231437932188767 0.227058891075418 0.235840081516867 0.226483760210143 0.227996781778675 0.226483760210143 0.229549497652659 0.231124789319261 0.237174343658348 0.228402622898742 0.233308524494171 0.227860282553230 0.230620477265169 1 1|0 -|/ 1325590 1326410 1326010.7 1325384 1331085 - gene protein_coding_gene FALSE TRUE AT1G04730.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein / BRCT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G22010.1); similar to ATPase, AAA family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95127.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06831.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.184517818481093 -1.59117403092460 0.140181544458173 1 0.53330462690509 4.66554094624946 -0.184517818481093 0.136818623475568
AT1G74450_at 6.32673926874132 6.62799691385822 6.8436818360684 6.9400052825537 6.63956607786071 6.41096810363232 7.20268372329553 7.21291405878139 6.08670758077711 5.5510543941342 6.33318276782156 5.67113644328578 5.40021912132054 6.12674219850776 4.74284548429446 5.91973672071175 5.52200437254915 5.79469408511207 5.89325873384004 0.230947008082902 0.224893294408865 0.229031327273286 0.232586205096998 0.226308137428380 0.231853358261207 0.227605291663382 0.232059697457818 0.230179033201145 0.228388178914264 0.224673563396260 0.230280823047985 0.230541796088339 0.229348438359149 0.235726650748631 0.224397992859076 0.239277101283746 0.233784988643505 0.227671877313605 1 1 + 27986994 27987394 27987124.636 27986170 27987941 + gene protein_coding_gene FALSE TRUE AT1G74450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18740.1); similar to Protein of unknown function DUF793 [Medicago truncatula] (GB:ABE83157.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) -0.144440793261864 -1.59083461537312 0.140257946757826 1 0.532868269312674 12.5418162674910 -0.144440793261864 0.0675569742132281
AT3G17770_at 8.13156990430263 8.33984627491988 8.41234367701778 8.24678373052456 9.23549950962967 9.15735909939766 8.83032536918463 8.95145947669515 8.65076307643208 9.4129353337808 8.4555028505073 8.62385570915968 8.67958925817966 8.76611094103045 8.0341820219165 8.67074099909248 8.9476833734592 7.8448369336557 8.87444316423028 0.149125183565651 0.138270835918911 0.149091135909557 0.150547520094797 0.142691420449578 0.140352698248431 0.144573071894087 0.148120590741953 0.146036360163141 0.144112643684712 0.141672101980280 0.136139369970980 0.139177333512662 0.147093127544349 0.149136164952648 0.136139369970980 0.145405647162813 0.154746078530172 0.136660874763252 3 0|3 /|- 6082014 6082593 6082266.7 6081677 6086144 - gene protein_coding_gene FALSE TRUE AT3G17770.1 dihydroxyacetone kinase family protein similar to dihydroxyacetone kinase family protein [Arabidopsis thaliana] (TAIR:AT1G48430.1); similar to 3,4-dihydroxy-2-butanone kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM47307.1); similar to 3,4-dihydroxy-2-butanone kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98577.1); similar to Putative 3,4-dihydroxy-2-butanone kinase (GB:O04059); contains InterPro domain Dihydroxyacetone kinase; (InterPro:IPR012734); contains InterPro domain Dak phosphatase; (InterPro:IPR004007); contains InterPro domain Dak kinase; (InterPro:IPR004006) -0.138435758036209 -1.59067094261372 0.140294802490781 1 0.532657868832213 17.4042450230537 -0.138435758036209 0.0523668497231049
AT4G13790_at 1.23476727573429 2.18495675283712 1.15808031678925 1.71957491939919 2.11473249815286 1.97982930362247 0.67267232786002 1.12691805674372 0.821970310278244 0.597968430314594 0.719373629445806 1.27714713278035 0.416462924141453 0.811542432123289 1.37989845042447 0.79402880393312 0.745033379257306 0.674156566950755 1.02159955905655 0.201624268411338 0.201545593478194 0.207781408436788 0.209023013015871 0.201843942109981 0.209857871526638 0.204222738362356 0.202845620520012 0.214000456246340 0.206741890388079 0.202122906171157 0.203731148002345 0.199895198906362 0.203004674019816 0.204223373467427 0.200511682951399 0.210553082529233 0.199895198906362 0.206995445278984 4 4 - 7999844 8000085 7999971.364 7999710 8000218 - gene protein_coding_gene FALSE TRUE AT4G13790.1 auxin-responsive protein, putative similar to SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA) [Arabidopsis thaliana] (TAIR:AT4G38850.1); similar to SAUR [Raphanus sativus] (GB:BAA25434.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.238292485598048 1.59043162930095 0.140348706220975 1 0.532350255787763 2.35696718877496 0.238292485598048 0.207858339433684
AT4G26690_at 7.36069975723512 7.91790397645189 7.1013773818423 7.51413788473802 7.9062999913657 7.98440571911766 8.34450822882474 8.20532843526223 8.30196455695091 7.69417150827851 9.16339483029046 8.81380400956582 8.23943456619378 8.66234659977975 8.80723330574902 7.96640111416276 7.8443276597405 8.58208454879928 7.49055510061091 0.207010954462259 0.197659544547111 0.218003472639949 0.211539662757848 0.198602190226837 0.215155435262211 0.209625454380982 0.206869604149987 0.242053085923045 0.209982687022611 0.205361680416096 0.206421326897250 0.203311386823613 0.211621233973507 0.212879293594344 0.204321026296374 0.225931868681317 0.211870705051308 0.202453706432902 4 4 - 13456826 13457454 13457164.182 13456441 13460066 - gene protein_coding_gene FALSE TRUE AT4G26690.1 MRH5/SHV3 (morphogenesis of root hair 5); glycerophosphodiester phosphodiesterase/ kinase Involved in root hair development. Identical to Probable glycerophosphoryl diester phosphodiesterase 2 precursor (EC 3.1.4.46) (GPDL2) [Arabidopsis Thaliana] (GB:Q9SZ11;GB:Q93ZT1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66970.1); similar to protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66980.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); similar to B0806H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67272.1); similar to Os04g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053060.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) 0.175213209413743 1.59020623331748 0.140399491789783 1 0.532060557018596 15.9612203641374 0.175213209413743 0.123138978526887
AT2G16835_at 1.53559111505763 1.50718093620477 1.61785987827619 1.8209242380545 1.54577480531553 1.59223596442367 1.58469322211752 1.12365885430819 1.52351777338007 1.68606686737046 1.67354005544756 1.28331466957610 1.59854470097942 1.57218489582718 1.53214889633026 1.48558564146678 1.9288961857902 1.73461393602676 1.28865022196513 0.164681593780039 0.167405237942401 0.167672946505042 0.161035150256649 0.162499999785551 0.165825287318165 0.165301775619435 0.170508009466298 0.163447309034997 0.164313415943949 0.159544125784572 0.165853597135485 0.165663301564366 0.167076921929917 0.166995360079132 0.162211333415625 0.167038815456357 0.165269744198825 0.166461244349055 2 2|0 +|/ 7303000 7303201 7303152.222 7302933 7303400 + gene protein_coding_gene FALSE TRUE AT2G16835.1 water channel protein, putative contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.154054845685380 1.58956947173432 0.140543052226798 1 0.531242265803682 3.09124749851263 0.154054845685380 0.0876882855295497
AT1G70900_at 8.83396141457365 8.77838245187253 9.05285062952061 9.31778947669141 9.40509707928766 8.70792426228511 8.98641890784484 8.8203421178961 8.60084120697236 8.42096717708748 8.6011723975343 8.45806006607393 8.9221016983088 8.9664773058292 8.43811984185211 9.15446731252423 8.49972673045146 8.78852810754011 8.87384416524367 0.155716496183854 0.155872990424078 0.1523747661656 0.154560623888283 0.152152336602718 0.185473461847601 0.158041743446978 0.153492718822291 0.155263071987890 0.166259488561560 0.155399693700595 0.153505060852394 0.156963120781042 0.154212152053522 0.153520346495815 0.15273971556526 0.160366534336516 0.154784418219763 0.157507040852251 1 1 + 26736373 26737252 26736869.636 26735475 26737537 + gene protein_coding_gene FALSE TRUE AT1G70900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23110.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89195.1) 0.181418319156261 1.58946406867731 0.140566828190537 1 0.531106832823157 17.6680787253042 0.181418319156261 0.132577611740451
AT2G45650_at 0.907796242779689 0.845643917010472 0.573332908348726 0.913538768223927 0.509380466793578 0.848148748565456 0.405950691185406 0.934865838463925 1.58222374415109 1.15404847998493 0.8735022184021 0.685165047856287 1.06408136778923 0.538268460738009 1.13981894753325 1.02524013281256 1.32343567151245 1.30279535788019 1.11273141129125 0.181107132692131 0.189965576837097 0.188321570792782 0.183563892856921 0.183769000585867 0.191528220904828 0.180664321928415 0.181935092741644 0.200285852729242 0.186423725554434 0.185737557703814 0.186204745614043 0.188282346480584 0.187083712381689 0.181443952707540 0.181426220610499 0.188509022778995 0.192337311754099 0.180233612281728 2 2|0 +|/ 18812237 18813268 18812936.7 18811424 18813596 + gene protein_coding_gene FALSE TRUE AT2G45650.1 AGL6 (AGAMOUS LIKE-6); DNA binding / transcription factor sequence suggests this encodes a MADS-box transcription factor Identical to Agamous-like MADS-box protein AGL6 (AGL6) [Arabidopsis Thaliana] (GB:P29386); similar to AGL13 (AGAMOUS-LIKE 13), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61120.1); similar to MADS-box protein AGL6-a [Brassica oleracea var. botrytis] (GB:CAD48306.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.175713380310265 -1.58913624935006 0.140640797570776 1 0.530685649799628 1.88085200385870 -0.175713380310265 0.124083708148888
AT3G49730_at 3.72888429634448 4.17600477709301 3.94618140833536 3.15975961126205 2.72685160102000 3.09971167860681 3.00795563818156 3.14985361001956 2.81761128219224 2.728363814357 2.62053225434832 2.74442304068245 2.39884909633846 2.22858930319487 2.83938564675242 2.21054115829983 2.55149181195279 2.77455832108976 2.49935306651711 0.212956596409092 0.208025785142151 0.205846388665640 0.222533015463062 0.203320287565169 0.210352350005166 0.20605159705651 0.204432181637891 0.217427038668947 0.217618379564276 0.210349503237053 0.205837875796356 0.210613607562888 0.205785324596833 0.207718600387991 0.209535305438366 0.202033576304890 0.209632203624413 0.204899467167321 3 0|3 /|- 18453467 18454054 18453730.5 18453260 18458631 - gene protein_coding_gene FALSE TRUE AT3G49730.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65820.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77056.1); similar to Os03g0728200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051146.1); similar to Os03g0727900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051144.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.20913911543834 -1.58877441082628 0.140722482725412 1 0.530220818369093 5.98831151932676 -0.20913911543834 0.171099841782691
AT1G21050_at 8.89018313233414 9.11740220860927 8.60628215270904 8.66128034658251 9.4503014704972 8.91043967140599 8.33100643880608 8.32604566979703 7.97194144516456 7.86870306744283 6.38049659989509 7.51718091259377 8.19689022418882 7.37764690852744 7.3052508090734 7.92402253773726 8.49322484038259 6.62618659750067 8.28560194705063 0.174922112961680 0.175266049213216 0.178931560557732 0.175579458406906 0.179159447222377 0.180196759950174 0.177203983504517 0.174494295273229 0.197867642777913 0.184154610868294 0.195518262929088 0.175766194181033 0.179478776297842 0.177980272545705 0.190800399490265 0.175995487543503 0.188371675521455 0.189471724497539 0.173111779061104 1 1 + 7367022 7367408 7367236.364 7366764 7367667 + gene protein_coding_gene FALSE TRUE AT1G21050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76610.1); similar to Plant-specific domain of unknown function 3588 [Medicago truncatula] (GB:ABE91797.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460) -0.161776588284955 -1.58813239981283 0.140867519374749 1 0.529396220602298 16.5464649273210 -0.161776588284955 0.101812734485968
AT1G21230_at 1.46724789767428 1.90695915841625 2.42061775123091 1.86543769127495 1.69693323988238 2.22361635246530 1.79534458585011 1.75964999421670 2.12722024566257 1.87072307960356 2.10495904535926 2.03316081242473 2.13403166012309 2.03010218841699 2.34669858058857 1.58945714756047 2.3033831337651 2.56944032001516 2.20380631476205 0.180956204155510 0.175154230039445 0.175154230039445 0.178268825388469 0.184807266863327 0.178647317809082 0.184125505653721 0.176301128106558 0.179156256100315 0.175154230039445 0.179856897232042 0.185714050961426 0.177980073334654 0.181389668347282 0.181731621947693 0.178225308276638 0.176055807610952 0.177676225995607 0.179757563308871 1 1 + 7431796 7432263 7432068.909 7429969 7432335 + gene protein_coding_gene FALSE TRUE AT1G21230.1 WAK5 (WALL ASSOCIATED KINASE 5); kinase/ protein serine/threonine kinase encodes a wall-associated kinase Identical to Wall-associated receptor kinase 5 precursor (EC 2.7.11.-) (WAK5) [Arabidopsis Thaliana] (GB:Q9LMN7); similar to WAK3 (WALL ASSOCIATED KINASE 3), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21240.1); similar to WAK2 (wall-associated kinase 2), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21270.1); similar to WAK1 (CELL WALL-ASSOCIATED KINASE), kinase [Arabidopsis thaliana] (TAIR:AT1G21250.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.195502540348162 1.58804277170194 0.140887777683327 1 0.529281118078181 3.99505282939689 0.195502540348162 0.152861261925310
AT3G28850_at 4.6212633492385 5.39735482637444 5.37237521736156 5.53641766918469 5.12760853295865 5.00019319422745 4.16419638238937 4.44934510896427 4.44889429710566 4.80962629089072 4.32198208559279 4.1077234108741 4.50007048468986 4.63106455710167 4.20822238397933 4.25443120341326 4.70696679725926 4.67572069677157 4.67243566074512 0.205270407827989 0.214425323293145 0.207112605620890 0.209282146265588 0.207553883339017 0.20999448909359 0.201328238876633 0.209236350396722 0.208433588431383 0.207498116144550 0.200962845512382 0.206402091069859 0.205889377480456 0.211315036723713 0.205227632771886 0.200962845512382 0.200962845512382 0.202458784087718 0.210772817741801 3 3 + 10850595 10851168 10850939.273 10849906 10851359 + gene protein_coding_gene FALSE TRUE AT3G28850.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G39865.1); similar to Glutaredoxin [Medicago truncatula] (GB:ABD32222.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.191614678118918 1.58759752301559 0.140988453483083 1 0.528709376146301 9.4933066777744 0.191614678118918 0.147530737214796
AT2G40950_at 6.35593655086535 6.61535754669394 6.21410366184761 6.60899245877387 5.46990426058535 5.71617684073131 4.92151968683188 5.48717464542205 4.98103171042759 4.4229393853225 4.84808215178093 5.05195668299603 4.80034841691743 4.62287512291653 4.52179860724741 4.82944682581542 5.06999907275577 4.83712846525501 4.44118622262724 0.249292405393517 0.253241009425108 0.251265408034608 0.262013626153217 0.258298511807698 0.256329711335734 0.25475497725275 0.252126671190348 0.255999252515067 0.251871976792784 0.249292405393517 0.250836889569765 0.251121942829432 0.249292405393517 0.2556561838499 0.253369184056087 0.268483436384236 0.251417562126920 0.250984109074879 2 2|0 -|/ 17094909 17095814 17095197 17094698 17097502 - gene protein_coding_gene FALSE TRUE AT2G40950.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G56660.1); similar to putative bZIP transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAT85257.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.182474588391346 1.58739720998176 0.141033767123468 1 0.52845218593183 10.6425241353038 0.182474588391346 0.134477185038579
AT3G22570_at 1.56695339800048 1.64664053927729 1.72116300410645 1.94013466759369 1.57726043938853 1.48485258463526 1.74027800906578 1.74716651627901 1.75582544835197 1.90968372840424 1.51282070795583 1.79646060181394 1.82232012703177 1.98603785132756 1.44797514880626 1.51708575591335 1.38777671621363 1.70910140937468 2.10485257079981 0.206057667571369 0.205688546879884 0.211695349012441 0.209857092050381 0.204715331413560 0.211853160096526 0.20965266960319 0.211970759828302 0.206493785561165 0.222583237368011 0.204266774736184 0.217253814342764 0.211647842261630 0.204266774736184 0.208257850103769 0.217899308622831 0.224264522169541 0.217155498876216 0.213189089677314 3 3 - 8000848 8001135 8000991 8000522 8001245 - gene protein_coding_gene FALSE TRUE AT3G22570.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G22580.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.135206783886019 -1.58700328275896 0.141122916301292 1 0.527946462372757 3.46350674762163 -0.135206783886019 0.0433968145804443
AT1G72260_at 2.71401119494012 3.00232965701876 3.12960022272663 3.09550448588368 2.35362872696768 2.94515823646672 3.13346257000801 3.03366336683704 3.66110857034372 3.41965737414029 3.24944758259020 3.05774523276573 3.24937336062885 3.27012468053045 3.15574842901512 3.14145885701399 3.50287761663321 3.19291986784762 3.35093863983819 0.211302017591885 0.203072528137484 0.204499726119881 0.205921141174689 0.206236911292993 0.208398268938638 0.206544587348676 0.201634163366104 0.200456865641659 0.22055012646356 0.200532972239413 0.208624290650919 0.204303554117325 0.200917827925630 0.201790241645800 0.199326995262484 0.199326995262484 0.205764549580037 0.207567662804981 1 1|0 -|/ 27202484 27202958 27202750.9 27202095 27203106 - gene protein_coding_gene FALSE TRUE AT1G72260.1 THI2.1 (THIONIN 2.1); toxin receptor binding Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Identical to Thionin-2.1 precursor [Contains: Thionin-2.1; Acidic protein] (THI2.1) [Arabidopsis Thaliana] (GB:Q42596;GB:Q8LCH6;GB:Q9C7S9); similar to thionin, putative [Arabidopsis thaliana] (TAIR:AT1G66100.1); similar to thionin [Salvia miltiorrhiza] (GB:ABA87107.1); contains InterPro domain Thionin; (InterPro:IPR001010) -0.169833343626195 -1.58675115905833 0.141180000042396 1 0.527622825038912 6.27826821501552 -0.169833343626195 0.115332474655385
AT2G26550_at 5.65481533888742 5.5209341150572 4.96272666385368 4.84446803704206 5.921556785005 4.98620080713167 6.24465614570458 6.17061565603507 6.25848924889385 5.84054266699323 6.63568107087256 6.75199913589727 5.62098861436434 6.81808116076076 6.69338823047759 6.69273889353844 5.26976241268091 6.17301268194853 5.96654738455254 0.190792176016871 0.190299528817800 0.199280877960411 0.198861305839787 0.187774825028759 0.201453603771842 0.195443381459224 0.185154181087338 0.197765790334342 0.199973314309686 0.197159949473642 0.197509410444573 0.189718190212982 0.194057101898224 0.198954752548004 0.191802391160793 0.207489959493372 0.193074270373226 0.190733705575417 2 2|0 -|/ 11298668 11300115 11299511.111 11298662 11300504 - gene protein_coding_gene FALSE TRUE AT2G26550.1 HO2 (HEME OXYGENASE 2); heme oxygenase (decyclizing) encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin. similar to HY1 (HEME OXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT2G26670.1); similar to heme oxygenase 2 [Lycopersicon esculentum] (GB:AAK63013.1); contains InterPro domain Haem oxygenase; (InterPro:IPR002051) -0.204460241204310 -1.58646435497981 0.141244960449111 1 0.527254707372186 11.7151548395300 -0.204460241204310 0.165290495307539
AT3G28310_at 2.95045598939353 2.31252325160900 2.06972610502816 1.89587271482509 1.55135266000172 2.12164546965205 1.44664044533031 2.03461164872200 2.31110440447558 2.30142055376071 2.30122082967601 2.25499040322807 2.26423695013741 1.85039003543183 2.73347473407123 2.11027186993285 2.407401604919 2.32059966938658 2.70277554525516 0.217663432461385 0.209412335690941 0.21342534872681 0.212725959910635 0.199321247565148 0.216585789276963 0.208068804264218 0.212231008400512 0.214518387786589 0.204202314275616 0.194021458141714 0.195142348107925 0.196581740174216 0.210686632014696 0.207266386403405 0.203522811270206 0.204171282593250 0.194670985074505 0.210176199936116 3 3|0 +|/ 10578221 10578342 10578283.143 10578198 10578612 + gene protein_coding_gene FALSE TRUE AT3G28310.1 similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28290.1); similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28300.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) -0.21725941772645 -1.58597866575836 0.141355027636607 1 0.526631407162269 4.40723191720108 -0.21725941772645 0.182170527695432
AT3G01420_at 1.94916394525424 1.92368620596318 2.38282617207688 2.29778453768268 1.54310320161135 1.96848967216187 1.46721907270224 1.94023011368334 2.46578260266784 2.06497789500481 2.12404413641123 1.60066562607900 1.93780532833040 1.56655462676801 1.09027523126351 1.82350150201628 1.90314535152685 1.960716610954 2.40860209001724 0.206882932185353 0.206109400200634 0.207524088600919 0.209219265455071 0.204831457129840 0.208937179292428 0.204819339873529 0.210078710978216 0.213993006977839 0.216637522521497 0.212836359030049 0.205759157428877 0.211316943699627 0.208081527315489 0.212876306587205 0.203889526938992 0.209875782435694 0.205687712852067 0.214455611319384 3 3|0 -|/ 159720 160432 160081.7 159473 162844 - gene protein_coding_gene FALSE TRUE AT3G01420.1 ALPHA-DOX1 (ALPHA-DIOXYGENASE 1) Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress. Independent of NPR1 in induction by salicylic acid. similar to pathogen-responsive alpha-dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G73680.1); similar to oxygenase [Nicotiana tabacum] (GB:CAA07589.1); similar to pathogen-inducible alpha-dioxygenase [Nicotiana attenuata] (GB:AAG59584.1); similar to alpha-DOX1 [Lycopersicon esculentum] (GB:AAR05646.1); contains InterPro domain Animal haem peroxidase; (InterPro:IPR002007); contains InterPro domain Haem peroxidase; (InterPro:IPR010255) -0.167153124706096 -1.58596325503027 0.141358521256211 1 0.526611631939343 3.96604257225795 -0.167153124706096 0.111156378250190
AT1G14100_at 0.758057638956532 0.748080205934804 0.452944026667638 0.759557133837824 0.46634799162615 0.936799440057851 0.64752679460214 0.845496431294443 1.01533949881341 0.204486586115507 0.374956142095108 0.884106494579074 0.563106802006292 0.684718761856476 0.450126456541971 0.221026810878875 0.121038436026836 0.161587859876601 0.763843667420704 0.211496818673772 0.208096700033563 0.209900091381561 0.208096700033563 0.212779542534295 0.209567657738494 0.208096700033563 0.212695527991926 0.212411194221157 0.212639550702047 0.209808491066897 0.215417180576071 0.223320696848011 0.218040078496548 0.216410922892323 0.214800966991977 0.21213717905137 0.215940215207624 0.208713384735584 1 1 + 4828999 4829544 4829349.8 4827958 4829584 + gene protein_coding_gene FALSE TRUE AT1G14100.1 FUT8 (FUCOSYLTRANSFERASE 8); galactoside 2-alpha-L-fucosyltransferase member of Glycosyltransferase Family- 37. FUT8 was previously associated to AT1G14110 Identical to Probable fucosyltransferase 8 (EC 2.4.1.-) (AtFUT8) (FUT8) [Arabidopsis Thaliana] (GB:Q9XI78); similar to FUT6 (fucosyltransferase 6), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14080.1); similar to FUT7 (Fucosyltransferase 7), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G14070.1); similar to FUT4 (fucosyltransferase 4), fucosyltransferase [Arabidopsis thaliana] (TAIR:AT2G15390.2); similar to Putative fucosyltransferase 10 (AtFUT10) (GB:Q9SJP6); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) -0.162258949975084 -1.58573440490493 0.141410410604745 1 0.526317982213579 1.24875456850510 -0.162258949975084 0.103055133201201
AT2G42270_at 4.85944701740239 5.22084655174281 6.42223689291204 6.25956855660684 5.89506382635492 5.72662323409495 6.10464685739795 5.93843977607318 5.5130860703251 6.31924587585635 5.87228571847434 5.71609305242192 5.88361006475049 5.79166074776283 5.17193422183712 6.73203977240002 6.05948854187399 6.03624316296864 6.62864500456295 0.222149192008195 0.219004420984355 0.231929033006276 0.213510076484140 0.212567460561398 0.223411923717576 0.213006302085140 0.210888890614463 0.235697921052807 0.223978414782245 0.208911274995217 0.213542154541964 0.210774983176469 0.216503714643684 0.228764799390523 0.214240254287337 0.226128326900280 0.212185793931985 0.216532424386185 2 2 + 17617485 17617894 17617719.909 17611408 17618411 + gene protein_coding_gene FALSE TRUE AT2G42270.1 U5 small nuclear ribonucleoprotein helicase, putative similar to EMB1507 (EMBRYO DEFECTIVE 1507), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G20960.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G61140.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 8 [Bos taurus] (GB:XP_880052.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Danio rerio] (GB:XP_685958.1); similar to putative Sec63 domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAP13001.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Sec63; (InterPro:IPR004179) 0.149644251783905 1.58517692114712 0.141536884074194 1 0.525602750196704 11.8341482860194 0.149644251783905 0.0798807352809116
AT3G05320_at 2.37996344415837 2.68967216321318 3.3909967861106 3.8575441305899 3.00920863485295 2.56370749819243 3.57017363378281 3.82223232369628 4.85591399079412 4.11246978659384 6.19081631734831 4.49588903176178 4.61808003439108 5.63721459965083 3.80636846576763 4.75528753637324 3.52704161062828 4.25020970330185 4.20139090079738 0.219354540263517 0.223601958957791 0.223487549752891 0.213429130760802 0.222738320954982 0.235790832066546 0.224032005688091 0.221313189511426 0.224776240825825 0.217521592788640 0.213429130760802 0.217444752526067 0.213657090624641 0.226843211585447 0.213429130760802 0.213429130760802 0.222482341592655 0.215830505872426 0.219138982418411 3 3 - 1513578 1514120 1513800.364 1513456 1514688 - gene protein_coding_gene FALSE TRUE AT3G05320.1 similar to protein-O-fucosyltransferase 1 [Saccharum officinarum] (GB:CAH40838.1) 0.180021195449121 1.58482352564259 0.141617108452815 1 0.525149433306003 7.68545647939023 0.180021195449121 0.131292589856772
AT4G14640_at 1.3977594280475 1.76749043776851 1.97823560430659 1.56918209020601 1.75553568530957 1.69574238442872 1.22966930723391 1.48684562107705 1.55243934592496 1.27902123106096 1.43570226388722 1.30867856957469 1.54074381509506 1.47243587815599 1.37113249218702 1.24778788096935 1.61809765491719 1.51152658621688 1.33846609441983 0.196274999615026 0.198544860147937 0.191352887996645 0.195481338089861 0.192910208510416 0.199915133059288 0.198471550185098 0.195025310135656 0.191352887996645 0.194257559362935 0.195795610550462 0.19215616450053 0.198769057056818 0.191352887996645 0.195710376951880 0.191352887996645 0.201492641533241 0.196559812377883 0.203984719617286 4 4|0 +|/ 8397837 8398098 8398004.222 8397707 8400069 + gene protein_coding_gene FALSE TRUE AT4G14640.1 CAM8 (CALMODULIN 8); calcium ion binding encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Identical to Calmodulin-like protein 8 (AtCaM-8) (CAM8) [Arabidopsis Thaliana] (GB:O23320); similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G22930.1); similar to calmodulin NtCaM13 [Nicotiana tabacum] (GB:BAB61919.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.163760164010577 1.58456250935834 0.141676387405507 1 0.524814653968754 3.02417691967757 0.163760164010577 0.105795817990763
AT4G21560_at 7.28927345226638 7.6973672216493 7.44683844246643 7.25735006148344 8.1466397832857 7.39461221035771 7.1691838456396 7.00087116439744 6.94717954723646 6.26656397176793 6.72092429603995 6.49887263843016 6.76769828029827 6.7994875547957 6.26572361630219 6.9308176822826 6.36956431092899 6.69365300217974 6.31843498507908 0.201122061529478 0.203135973556101 0.213659500414666 0.224063037802405 0.213173077531130 0.212233652933871 0.205174292845431 0.210158119656797 0.216226543646778 0.201366597362088 0.201880666066867 0.199437267395587 0.209256786852177 0.206955792717625 0.200984895426525 0.202494929557459 0.224823160943329 0.202617605729988 0.201824219651551 4 4 - 11469052 11469550 11469280.091 11468773 11470545 - gene protein_coding_gene FALSE TRUE AT4G21560.1|AT4G21560.2|AT4G21560.3 vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein Identical to Vacuolar protein sorting-associated protein 28 homolog 2 [Arabidopsis Thaliana] (GB:O65421); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G05000.2); similar to hypothetical protein DDBDRAFT_0186436 [Dictyostelium discoideum AX4] (GB:XP_638318.1); similar to Os01g0781000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044441.1); contains InterPro domain Vacuolar protein sorting-associated, VPS28; (InterPro:IPR007143) 0.196151354019759 1.58408794205513 0.141784221297274 1 0.524206057876598 13.9960514430358 0.196151354019759 0.154428478446601
AT3G55100_at 1.01742595783439 0.741336395267047 0.674644996406939 1.05511415811134 0.833259575336306 0.864915287760605 1.01673167402384 0.798411683325875 1.15037881587018 1.39648522810436 0.453050189945929 0.73764645715836 0.873096675685536 1.24118260335752 0.76746954504018 0.900103915758374 1.51466295170823 1.10987559145160 1.12046277509430 0.179269545458650 0.177995789501901 0.186358303578989 0.185221142719767 0.183154878892425 0.177995789501901 0.183857048670861 0.182564464399239 0.186241697019405 0.18078727468408 0.184272813316471 0.185394202059485 0.184407832312396 0.180519909578049 0.187781977929493 0.18308820024891 0.183599266925116 0.190081005488105 0.177995789501901 3 3 - 20431454 20431904 20431733.273 20431267 20433317 - gene protein_coding_gene FALSE TRUE AT3G55100.1 ABC transporter family protein Identical to Probable white-brown complex homolog protein 17 (WBC17) [Arabidopsis Thaliana] (GB:Q9M2V6); similar to ATWBC19 (WHITE-BROWN COMPLEX HOMOLOG 19), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G55130.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55110.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G13580.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to putative ATP-binding-cassette transporter protein [Oryza sativa (japonica cultivar-group)] (GB:AAN64479.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97036.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.154649602484361 -1.58378306532722 0.141853535085362 1 0.523815133875056 1.96126909815137 -0.154649602484361 0.089863194901455
AT1G01030_at 2.63790288650861 2.33511081541123 2.09505854389049 1.95632877195856 1.70775632957706 2.03472238038235 2.15090641324425 1.8154497048934 2.44486749538141 2.32328286015019 2.19348756747634 2.12456780947714 2.07589493073704 1.94763749438291 2.58822330302046 1.85512456476609 2.28374797783590 2.03060329123473 1.74437221141628 0.206767569748533 0.208867387308424 0.215532690705452 0.208756006103951 0.214051405522441 0.213905951091647 0.217015208000388 0.215808204990169 0.214047203213261 0.207381457014637 0.206767569748533 0.213545800171802 0.212089446715836 0.206767569748533 0.215261915016207 0.207600001513107 0.207844058192791 0.209869708992925 0.212112017348218 1 1 - 11994 12431 12245.091 11649 13714 - gene protein_coding_gene FALSE TRUE AT1G01030.1 NGA3 (NGATHA3); transcription factor similar to NGA4 (NGATHA4), transcription factor [Arabidopsis thaliana] (TAIR:AT4G01500.1); similar to NGA1 (NGATHA1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46870.1); similar to Os02g0683500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047754.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.159902968422613 -1.58303121459327 0.142024595479420 1 0.522851274153133 4.24578034224105 -0.159902968422613 0.0994675980953564
AT1G50570_at 8.57766569963858 8.82270577148262 8.79591641847244 8.89764612923408 9.10574631107596 9.27729546928697 8.10825550681668 8.44936611758902 7.89183214773452 7.65524534738741 7.57693402446627 7.55126827138802 7.69724918926792 7.50489930453897 7.099272557959 7.69377655655173 7.93636238708347 7.66940151448025 7.91737510687855 0.191250247048351 0.187490457055661 0.197056965196696 0.188535733684437 0.199165682789709 0.192072525108908 0.191954007937601 0.186633018881027 0.198977796392505 0.193111682398209 0.184749804071462 0.183973617619793 0.187416808692708 0.184979686000274 0.189199169256940 0.186871508798131 0.197119860523197 0.188515031957338 0.195246383050877 1 1 - 18730099 18730585 18730333.455 18729906 18731957 - gene protein_coding_gene FALSE TRUE AT1G50570.1|AT1G50570.2 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55530.2); similar to C2 [Medicago truncatula] (GB:ABE81465.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.149657041592882 1.58227437124788 0.14219697438136 1 0.521881288029865 16.4606395161414 0.149657041592882 0.0804618833355293
AT4G04080_at 1.33095753538022 1.48125802904384 1.56000040099304 2.02457430238347 1.51995020027468 1.51257825317809 1.56956747608591 1.75205039041326 1.72657970826118 1.77742831868917 2.03914184282063 1.77941306691254 2.17143054238473 1.82504955804983 1.68032979110798 1.74233109583160 1.87005538479363 2.03320349782216 1.60815369223685 0.190347254178886 0.199683728919361 0.206724082578959 0.194455389838338 0.189330410388324 0.192115648478447 0.190752674792408 0.204983241217584 0.209017115255452 0.192660486991306 0.189330410388324 0.200636250915083 0.197844434036754 0.189330410388324 0.204393368226897 0.193846833344014 0.207613834021619 0.195457100794572 0.189330410388324 4 4|0 +|/ 1963414 1964268 1963652.3 1963356 1964421 + gene protein_coding_gene FALSE TRUE AT4G04080.1 ATISU3/ISU3 (IscU-like 3); structural molecule Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein. similar to ISU1 (Iron-sulfur cluster assembly complex protein) [Arabidopsis thaliana] (TAIR:AT4G22220.1); similar to iron-sulfur cluster assembly protein IscU [Chlamydomonas reinhardtii] (GB:AAL29442.1); contains InterPro domain FeS cluster assembly scaffold IscU; (InterPro:IPR011339); contains InterPro domain Nitrogen-fixing NifU-like, N-terminal; (InterPro:IPR002871) 0.154691436273084 1.58227101594664 0.142197738994021 1 0.521876988418697 3.39220370039962 0.154691436273084 0.0902166856297645
AT1G56100_at 0.836482588276032 0.826924672810839 1.06388675404884 0.902079026731712 0.413659786605726 0.728212402354747 0.7043682524146 0.911093438659917 1.33299781465749 1.11224876905674 1.34969927587698 0.438460028911401 0.486727983576028 0.608929408114004 0.778928434005445 0.801921561748096 1.60710270975514 1.11959283000828 0.993868753500155 0.256202649052330 0.245897769020509 0.248348079245882 0.247211238661617 0.24804269043943 0.249417521327078 0.245897769020509 0.245897769020509 0.245897769020509 0.254319511663126 0.252035805305348 0.249663488174814 0.255381631225539 0.250285493182397 0.245897769020509 0.246183651954513 0.256691782125832 0.254537162689338 0.246015997298992 1 1|0 -|/ 20985752 20987521 20987252 20984034 20987644 - gene protein_coding_gene FALSE TRUE AT1G56100.1 pectinesterase inhibitor domain-containing protein similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT4G00580.1); contains InterPro domain Protein of unknown function DUF544; (InterPro:IPR007518); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.145104622838566 -1.58180046709672 0.142305004285916 1 0.521274062714783 1.82098439427324 -0.145104622838566 0.0709211172034546
AT3G16240_at 10.8830003548020 11.1803667171799 10.1982731588692 10.3921959794030 11.5783978365713 11.4008504011444 10.7628877602027 10.9692561271437 12.4016320807911 11.7799354659072 13.1970978982709 12.9266489108196 12.8188441618059 12.4208575374722 12.9303321770437 12.3072264181104 11.5725982713589 12.8437594184736 12.6419400049868 0.0951929759029813 0.0909917113509347 0.100437694408041 0.0993179559265068 0.0920654872337058 0.0944605326592043 0.0934850856775603 0.0924571487289186 0.105291475486611 0.0937865888967188 0.095811015065948 0.0920662627990458 0.0909917113509347 0.0970096497011482 0.097980456922753 0.0909917113509347 0.0958846482033392 0.0946939749259913 0.0925218449308 3 3 + 5505817 5506739 5506294.818 5505410 5507056 + gene protein_coding_gene FALSE TRUE AT3G16240.1 DELTA-TIP (delta tonoplast integral protein); water channel Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane. Identical to Aquaporin TIP2.1 (Tonoplast intrinsic protein 2.1) (Delta-tonoplast intrinsic protein) (Delta-TIP) (TIP2.1) [Arabidopsis Thaliana] (GB:Q41951;GB:Q42200;GB:Q42201;GB:Q43352;GB:Q8VZ81); similar to DELTA-TIP2/TIP2,2 (tonoplast intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT4G17340.1); similar to delta-VM23 [Raphanus sativus] (GB:BAA31452.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.148109843052961 1.58159919439294 0.142350907621417 1 0.521016199584872 23.3714901001134 0.148109843052961 0.077420217632446
AT1G05520_at 6.40386125592698 6.62439969636513 6.35227525057886 6.7606494237296 6.45108607268426 5.95755647165031 6.32376644602666 6.82856189877156 5.43258247102467 4.79367189547702 5.10051867201696 5.91679708454664 5.33405452730608 5.54767304832671 5.40569815941787 5.74548522537413 5.00821502956761 6.20168844681821 4.73732410834556 0.284496334715675 0.271939473439143 0.281201750116577 0.274697985580222 0.267874104336898 0.285991890918641 0.28482247675942 0.270267470973643 0.283548692013187 0.270829806675668 0.28324339561997 0.276694151150506 0.277637707871756 0.27313324822918 0.275679307963122 0.270372066753473 0.290916764884814 0.282142858515996 0.269780580103984 1 1|0 -|/ 1631147 1631974 1631669.1 1630899 1635710 - gene protein_coding_gene FALSE TRUE AT1G05520.1 transport protein, putative similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.2); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Vesicle coat complex COPII, subunit SEC23 (ISS) [Ostreococcus tauri] (GB:CAL55059.1); similar to hypothetical protein UM01624.1 [Ustilago maydis 521] (GB:XP_757771.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.189950631472101 1.58158422020661 0.142354323233425 1 0.520997015990402 11.7229574473604 0.189950631472101 0.146207799555985
AT2G36810_at 7.13618865060787 7.01167391165722 7.17817334958513 6.92336916451119 7.26089244306833 6.95687779438803 6.96744446243574 6.8721584280458 6.47095415441239 7.02117739552248 7.13154405017115 7.27951380383143 6.84925860876392 7.10864156591567 6.95501538998619 7.31657288658518 6.71165912317613 6.92279596499164 6.98147386202536 0.207191581549373 0.207347620297314 0.209734587021393 0.210411093607972 0.204476066533812 0.227098782637149 0.211160431061498 0.208546174541152 0.22082399303691 0.211263233734916 0.203899637853583 0.206163760388884 0.215251092001459 0.207972031682775 0.215514356801956 0.205703171351286 0.208583741510321 0.210382302184997 0.217552367928067 2 2|0 -|/ 15432922 15434070 15433277.6 15432818 15443960 - gene protein_coding_gene FALSE TRUE AT2G36810.1 binding similar to Hypothetical protein [Oryza sativa] (GB:AAK98733.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.146400930779547 1.58153277198053 0.142366059121431 1 0.520931105924552 13.9678024312863 0.146400930779547 0.0738141391462561
AT1G04880_at 1.83609208660607 1.60058688236881 1.66161236391259 1.90359772814027 1.24216155404570 1.86201947231628 1.79165254388828 2.11476000168305 2.18253539928482 1.61667430724871 1.64435910240956 1.51145066143366 1.65573324824296 1.48475568713283 2.28142345166142 1.541350365789 1.90183559184998 1.91038125420344 2.00983154309687 0.196427994578733 0.192771975252013 0.18675235658596 0.197401871504711 0.190178377817969 0.189327349521526 0.192013592672850 0.203381721720688 0.205059339897604 0.192936626520429 0.190095725206428 0.185938773893631 0.202753772103106 0.188916159084162 0.195069737741889 0.189920540092414 0.190803516291649 0.188553900258430 0.187764536782369 1 1 - 1376112 1376746 1376406.545 1375960 1379184 - gene protein_coding_gene FALSE TRUE AT1G04880.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76110.1); similar to High mobility group proteins HMG1 and HMG2; AT-rich interaction re (GB:ABE91338.1); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.181680505951309 -1.58128667764777 0.142422207585979 1 0.520615853302407 3.59043945589537 -0.181680505951309 0.134342357345834
AT3G42780_at 1.43594103065807 1.30202595095589 1.49433467774265 1.72954954973509 1.09515747836051 1.99747841608353 1.37799714164112 1.68055726358878 1.80731730199923 1.66483674436830 1.85658942701925 1.51431461451924 2.02745329111100 1.88572998020011 1.73605787141313 1.57431865797909 1.37809915122200 1.73166788420628 0.807614761328412 0.203232817125823 0.211327996894072 0.204756045433435 0.210871839345267 0.208667613330723 0.206991628258678 0.205223685392279 0.206551495481646 0.225259615814145 0.206076030920477 0.21697129989673 0.203512537247140 0.211761913807719 0.209743119724374 0.209285065374076 0.210825311590305 0.213959375716602 0.204868721189351 0.221772255542769 3 3 + 14882245 14882621 14882402.1 14882201 14882731 + gene protein_coding_gene FALSE TRUE AT3G42780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G09130.1) 0.208219470456465 1.58106033576845 0.142473866493923 1 0.52032592974413 3.08393941973274 0.208219470456465 0.17122663577068
AT2G43760_at 8.81405111334667 8.75391924345715 8.23070210155177 8.48597575882595 9.19138001330016 8.96618539310405 8.55887923669945 8.80135984803277 8.36724527250014 8.6202851650779 8.5566351593559 8.40976003674856 7.88963200301843 8.3013481842416 8.27939681689718 7.99800572483893 7.99236199202846 8.28906989992336 8.49162838765747 0.166318837482070 0.169052413290135 0.168217480680955 0.168284760701332 0.164198979915658 0.171559462404822 0.163935435003866 0.169966728471307 0.18779608360141 0.167429060230567 0.162907250698613 0.173153276988515 0.164770373929815 0.165898474754161 0.173708570436476 0.168220386685041 0.175132904028278 0.167380114664264 0.171012927924226 2 2 + 18140421 18140710 18140571.091 18139751 18141145 + gene protein_coding_gene FALSE TRUE AT2G43760.1|AT2G43760.2 molybdopterin biosynthesis MoaE family protein similar to putative molybdopterin synthase large subunit [Momordica charantia] (GB:CAD80090.1); similar to Os02g0140300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045852.1); contains InterPro domain Molybdopterin biosynthesis MoaE; (InterPro:IPR003448) -0.146009129151078 -1.58100491441273 0.142486518032454 1 0.5202549437346 17.0790961729781 -0.146009129151078 0.0730712832561416
AT3G11180_at 0.69213159581456 0.874150006026957 0.764049377990482 1.02720690360782 0.837903456066424 0.894063506775188 0.921005940311917 0.794296551624924 1.52280716337718 1.28015457966768 0.517317371835519 0.921097329967581 0.922344756656757 0.847625748067373 0.410822894973093 0.76358402184872 0.942376745229013 1.41718549785064 0.749691470133198 0.183404170780001 0.187474039737231 0.190134721023550 0.192953381668909 0.183485076008632 0.185411412320039 0.189030266286227 0.191010509949841 0.181519959492026 0.186065477002887 0.182902393704163 0.181881423046436 0.201508989385032 0.189224186647698 0.187909746153517 0.183885466455340 0.187860071894685 0.190822813406259 0.187120317188332 3 3 + 3505707 3506657 3506230.455 3504220 3507119 + gene protein_coding_gene FALSE TRUE AT3G11180.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G05600.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE94015.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.140506827128522 -1.58035385849459 0.142635214224207 1 0.519421154487385 1.86410693404209 -0.140506827128522 0.0603441899120158
AT3G17611_at 3.99687606735618 4.89930251117867 4.66027058109494 4.76144256607898 3.85294819711912 4.22309499224022 4.97169950081433 5.34383232927008 3.92553595173325 4.07414300427985 4.14989557827198 4.11698065056215 4.47078746653354 3.93309903303965 3.85950024980222 4.33165587456974 4.39878716064893 4.35923813304550 4.61804907527479 0.208898746357080 0.216643669221447 0.216866909534716 0.210875100694074 0.212565999950681 0.219594343355153 0.215945281443343 0.210090750412286 0.22131648192645 0.208634829808698 0.213115379514994 0.207146577434707 0.208309095148525 0.216233474225206 0.220507966337289 0.207146577434707 0.221339681893486 0.210132302242477 0.207146577434707 3 3 + 6025581 6026137 6025839.364 6024801 6026449 + gene protein_coding_gene FALSE TRUE AT3G17611.1|AT3G17611.2|AT3G17611.3 rhomboid family protein / zinc finger protein-related|zinc ion binding Identical to Protein At3g17611 [Arabidopsis Thaliana] (GB:Q8RXW0;GB:Q682Z5); similar to rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58460.1); similar to unknown [Narcissus pseudonarcissus] (GB:AAL69367.1); similar to Os01g0283500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042766.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610)|Identical to Protein At3g17611 [Arabidopsis Thaliana] (GB:Q8RXW0;GB:Q682Z5); similar to hypothetical protein LOC549203 [Xenopus tropicalis] (GB:NP_001016449.1); similar to Os01g0283500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042766.1); similar to MGC84665 protein [Xenopus laevis] (GB:AAH80107.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -0.215952421737459 -1.58016244201894 0.142678958136501 1 0.519176051516951 8.79288452417998 -0.215952421737459 0.181509574282592
AT3G60470_at 1.28991934943422 1.33867236877047 1.04030899760894 1.57983174109892 0.750573295983513 1.03716980610905 0.892181030123786 0.950431420451644 1.16099572443243 0.897709995602676 0.625175771960389 0.974216082330293 0.921736216816977 0.871279454075488 1.20560293124797 0.400969449143266 0.973575503933287 1.10674264350929 1.53079908336024 0.184739929513218 0.18527262176514 0.187768455739238 0.188774839241471 0.194069446178786 0.185038138274619 0.184032355476066 0.190434777910952 0.193697122318289 0.191208570960933 0.193507412160191 0.184971117426101 0.193462210937125 0.184728309554971 0.185572572291320 0.186382873920572 0.190561861368153 0.18878605393763 0.191418381689098 3 3 + 22356813 22357827 22357412.727 22355788 22357859 + gene protein_coding_gene FALSE TRUE AT3G60470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44930.1); similar to Plant protein of unknown function [Medicago truncatula] (GB:ABE78531.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.163709713249794 -1.57980426942377 0.142760841964655 1 0.518717469789142 2.15059293007702 -0.163709713249794 0.106536520844829
AT2G25900_at 10.5667196147904 10.7604576994845 9.65707790699995 9.87126083032975 11.0979522936399 10.8036430889682 10.6228663041034 10.7223483814932 10.4818356411005 10.1452035246795 10.3800535209156 10.9678139667836 10.2966158043653 10.5193831193328 10.4719092770297 10.631706898593 9.88074333452018 9.82367290141309 10.4318389601104 0.120841188803294 0.115332850577578 0.121328490992365 0.118765206355109 0.115253956844786 0.123879679555937 0.114497317407855 0.114497317407855 0.120037166214186 0.121696138670418 0.124614277281071 0.114497317407855 0.118680193519421 0.124330814567136 0.122411643754777 0.115088188973819 0.136883889064144 0.123180895468040 0.116461709609173 2 2 + 11049331 11049703 11049539.909 11048796 11050249 + gene protein_coding_gene FALSE TRUE AT2G25900.1 ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor putative Cys3His zinc finger protein (ATCTH) mRNA, complete similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G19810.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.146043246205523 -1.57970987349111 0.142782429196726 1 0.518596621441301 20.8750141290591 -0.146043246205523 0.0734052439889318
AT1G27290_at 8.56139655312977 9.13143788384147 8.79097503415934 8.9814863446974 9.72410022961657 9.19200198706086 8.42636101625249 8.75123714418343 8.94870064646552 8.65740240122619 8.77900742734952 8.49919151686944 9.0801301586089 9.08174698511506 7.67925658856579 8.86460518206927 8.63284442721518 8.50715306462597 8.52506427631551 0.123876494934178 0.116676098817065 0.124988726781922 0.129260932707398 0.122738224256088 0.136639203744944 0.119025843315607 0.112446903672056 0.129993553000878 0.116593601049638 0.118628521000074 0.121697841066266 0.118904124316242 0.117703489355232 0.131031776414187 0.114881665388681 0.122607355146504 0.124305045354480 0.122916378431694 1 1 + 9481810 9482130 9481999 9481519 9482899 + gene protein_coding_gene FALSE TRUE AT1G27290.1|AT1G27290.2 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92577.1); contains InterPro domain Penicillin-binding protein, transpeptidase fold; (InterPro:IPR012338) 0.192317780165867 1.57966885936330 0.142791809533176 1 0.518544115329856 17.6203150375201 0.192317780165867 0.149861213906860
AT4G11690_at 1.04010951934237 1.43833672003093 1.32305285133882 1.05341429658984 1.21922948058725 1.49523383235800 1.25034938355861 1.29473227312658 0.935424765089488 1.49560532362144 0.388505180121681 0.963344449350044 0.674271914062484 0.642331521876259 1.06672149187905 0.694323244645466 1.03045369187146 0.93958359692254 0.965848816387466 0.203944416037053 0.200767602978673 0.201224062997715 0.208884551375812 0.200767602978673 0.20501078604973 0.202567410026531 0.208469982813463 0.205447621652343 0.205368281111010 0.206538031060327 0.205632168604325 0.203075815560415 0.215970774334053 0.200767602978673 0.206468977563229 0.207146945841579 0.214595830226237 0.200767602978673 4 4 + 7057358 7057920 7057632.818 7056248 7057948 + gene protein_coding_gene FALSE TRUE AT4G11690.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAS16889.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.157750220410577 -1.57965697502441 0.142794527699825 1 0.518528901201287 2.23042472197018 -0.157750220410577 0.0962653952997145
AT3G56670_at 0.50102112440147 0.558540597267141 0.569762518998598 0.756780250758248 0.547462230281136 0.0460783673259096 0.706841594652300 0.439723059750833 0.699987101018089 1.11166676816468 0.416434020570999 0.378179901494012 0.394415355608347 0.994765117538245 0.658669128574728 0.933219717887668 1.01699848395866 0.395021335549734 0.892051770103993 0.181301045465172 0.185985996127785 0.185247528282205 0.185893928504809 0.187068269856369 0.185086969246019 0.184303382798294 0.183812500566853 0.186915772063127 0.188185131409367 0.190417132027442 0.188672944537991 0.181301045465172 0.189668972337969 0.181301045465172 0.182294293284161 0.189120987243753 0.194142090071155 0.181735752216669 3 3 - 21000034 21000835 21000574.455 21000014 21000974 - gene protein_coding_gene FALSE TRUE AT3G56670.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G32420.1) -0.162141541312376 -1.57928660391192 0.142879261097344 1 0.518054792494359 1.29062526580115 -0.162141541312376 0.103980109174552
AT1G51390_at 5.51623380845277 6.6422435065712 5.51952779403514 6.2950933228524 5.88499244930714 5.93980295242066 5.27085579885872 5.36686272415255 4.00711725835315 4.1122605995448 4.60712054185155 4.47818058001944 4.2355072991872 4.48382270231936 4.72155327570207 4.56744990684629 4.46850984515444 4.52479866147438 4.48070113055148 0.293579435925808 0.291862473570831 0.291230992377779 0.291938711818562 0.286698778673728 0.288217077144948 0.278787596107555 0.284730006786220 0.289673330632445 0.284327667898471 0.278787596107555 0.278787596107555 0.282264737832865 0.285171329506783 0.280544633333229 0.278787596107555 0.297298362599187 0.295834986624717 0.278787596107555 1 1 + 19054535 19055389 19054894.125 19054012 19055762 + gene protein_coding_gene FALSE TRUE AT1G51390.1 NFU5 (NFU domain protein 5) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU4 than to NFU1,2, and 3. Targeted to the mitochondrion. Identical to NifU-like protein 5, mitochondrial precursor (AtNfu5) (AtNfu-I) (NIFU5) [Arabidopsis Thaliana] (GB:Q9C8J2;GB:Q9SYE1); similar to NFU4 (NFU domain protein 4) [Arabidopsis thaliana] (TAIR:AT3G20970.1); similar to Os05g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054690.1); similar to hypothetical protein UM04972.1 [Ustilago maydis 521] (GB:XP_761119.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) 0.260823346115612 1.57912156690479 0.142917032399279 1 0.51784355139886 10.1598986351076 0.260823346115612 0.237382889893651
AT2G07290_at 1.83184525117371 1.72319732596488 1.66552419624538 1.62277946892594 0.920125374084242 1.54609385258669 1.57807746260960 2.12053160624373 1.6241988679835 2.1924274026861 1.71984668098609 1.62856348687076 1.26498510781028 2.09557901946825 1.50654226645766 1.90570424040507 2.03456056172506 1.89947501516392 1.46153484526828 0.226520545483134 0.219589588786069 0.219589588786069 0.231136792923860 0.223849226662368 0.226655227844788 0.22316671406913 0.224719143786601 0.228489592477894 0.229267001544674 0.219672352481310 0.226069650226243 0.219589588786069 0.226724472842496 0.225207197489286 0.219589588786069 0.226027006479411 0.219589588786069 0.224039422111322 2 2|0 +|/ 3029566 3030008 3029733.4 3029558 3030032 + gene protein_coding_gene FALSE TRUE AT2G07290.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35110.1) -0.188631089911245 -1.57910017948572 0.142921927884920 1 0.517816177275977 3.38416886023269 -0.188631089911245 0.144759426416480
AT1G19340_at 3.67536851264688 3.24928752952361 3.02629186266277 3.15874679744139 3.63492994964039 3.6409724206796 3.72628078451084 3.15253566324136 3.22981705990734 3.37964494227529 3.71730445423432 4.70303979558183 4.1470459360786 3.98160041036435 3.45391016572206 4.00150776506371 3.55599020546882 3.41280290113482 3.69450859592553 0.247670497600382 0.249272799591002 0.256084618129864 0.261782479729637 0.248283790797038 0.264019111259014 0.244770759162083 0.248450105730924 0.264068092399773 0.255006112385989 0.245478534342742 0.259044776403460 0.258313608690361 0.253128891014602 0.244128028295559 0.244877424496796 0.263581242895924 0.24761580533944 0.25021180814176 1 0|1 /|+ 6685980 6686750 6686380.111 6684742 6687107 + gene protein_coding_gene FALSE TRUE AT1G19340.1 methyltransferase MT-A70 family protein Identical to Methyltransferase-like protein 2 (EC 2.1.1.-) [Arabidopsis Thaliana] (GB:Q8LFA9;GB:Q8GYB7;GB:Q9LN64); similar to PREDICTED: similar to methyltransferase like 4 [Bos taurus] (GB:XP_599482.2); contains InterPro domain MT-A70; (InterPro:IPR007757) 0.175680236647687 1.57878121019253 0.142994955976606 1 0.517407949188045 7.06120522516441 0.175680236647687 0.125784587998956
AT1G52590_at 8.16305841778787 8.78155497450232 8.59295262038237 8.59947398278248 8.53577480625988 8.04640550909335 9.07693714797572 9.41308402611143 8.30502412813516 8.2940812081427 7.90965942120294 8.03402370018702 8.04430883126504 8.3157986326281 7.93680247757702 8.75259003722605 8.08996392736831 8.00571642537034 7.7108142051181 0.203189056153388 0.194483279697643 0.208175259084173 0.207008223019303 0.195290561556416 0.214554210738546 0.201955677325319 0.198800339695428 0.205292189854587 0.201045715036614 0.19459169717517 0.199537250703267 0.199854598388122 0.193374353044521 0.199203998738281 0.193374353044521 0.217633931156715 0.200439857574254 0.205842462448388 1 1|0 -|/ 19592895 19593862 19593545.25 19592678 19593942 - gene protein_coding_gene FALSE TRUE AT1G52590.1 similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to Putative thiol-disulphide oxidoreductase DCC [Medicago truncatula] (GB:ABD28717.1); contains InterPro domain Putative thiol-disulphide oxidoreductase DCC; (InterPro:IPR007263) -0.191102747080183 -1.57842205916469 0.143077222799014 1 0.516948353800755 16.7708624083128 -0.191102747080183 0.148369276800387
AT1G70310_at 9.82895849514268 9.81283651772257 9.83111581512503 9.76765965153703 10.2063179145242 10.1710948003726 9.96110235466574 10.0681178682291 10.1110566534842 10.0295522026300 10.3079131730063 10.2238876965656 10.244547196753 10.1115721466921 10.4525768592282 10.1373994915022 10.1192509826207 10.4690572485805 10.0848877741017 0.069769312272586 0.0686844155274559 0.0772157745127327 0.0700971448210033 0.0680306511037388 0.0688055001226584 0.0750309786943522 0.0672371986109687 0.0735498928957835 0.0719776020303585 0.069371279494171 0.0672371986109687 0.0676279507664449 0.0739951185522637 0.071274442087263 0.0679294152712968 0.0754965480138542 0.0700478719881134 0.0697971488270996 1 1|0 -|/ 26489334 26489924 26489646.333 26488969 26491098 - gene protein_coding_gene FALSE TRUE AT1G70310.1 SPDS2 (SPERMIDINE SYNTHASE 2) Spermidine synthase. Identical to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2) (SPDSYN2) [Arabidopsis Thaliana] (GB:O48661;GB:O64606); similar to SPDS1 (SPERMIDINE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT1G23820.1); similar to Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY) (GB:Q9ZS45); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Spermine synthase; (InterPro:IPR001045) 0.129701646206481 1.57832448963449 0.143099579149309 1 0.516823507581282 20.1226209985518 0.129701646206481 0.0225500192754777
AT2G14080_at 8.11712519055185 8.56045404764593 8.56884839057264 8.55798395691489 8.97852834918141 8.00753140015084 8.2055741457286 8.3396604456672 6.72354130899323 6.69224973384631 7.1100671593879 6.83902617733881 7.81849197529238 6.78186750805483 6.58398425853158 7.4856831651995 6.91133067813814 6.23547875869436 6.84835675245517 0.255367010630054 0.262099929800645 0.264043278103659 0.260855334133679 0.257358839336115 0.275526472118728 0.26350542458873 0.265222602982095 0.300637109422762 0.258563781295169 0.257970409617932 0.25415464605062 0.25415464605062 0.271878063279526 0.272805637470042 0.257184227606229 0.298927366121094 0.286181662439996 0.259029464978204 2 2 + 5935356 5935841 5935624.727 5932268 5936682 + gene protein_coding_gene FALSE TRUE AT2G14080.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G44510.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G25510.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44392.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.219272422560667 1.57799549450680 0.143174985175004 1 0.516402571903004 15.2796918117240 0.219272422560667 0.186182428364355
AT1G12140_at 9.45818690810966 9.3595583410686 9.76777373546043 9.80579616581783 9.52014738661014 9.36022604053507 9.79460592454644 9.58876926848487 9.6109756939735 9.45175015576492 9.56453379018618 9.4612531393081 9.58769796198316 9.693945079468 9.3929773670029 9.98350591003271 10.0936389285328 9.89368320587453 9.43718704421638 0.0897240444028616 0.0933817348998447 0.0937442252331957 0.0960838373914036 0.0939284591555605 0.09954478872378 0.0928148901789359 0.0950872680876878 0.099485131708499 0.0955273382174266 0.099809061404013 0.09286743350644 0.0938229001014042 0.0932055845285406 0.0935515173109425 0.092284317653718 0.0941492793350567 0.0976628427715435 0.0962888931924687 1 1|0 +|/ 4122806 4123329 4123062.2 4121367 4123540 + gene protein_coding_gene FALSE TRUE AT1G12140.1|AT1G12140.2 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62570.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62560.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62540.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.136069589850215 1.57782632144128 0.143213773362229 1 0.516186142277043 19.1863206650542 0.136069589850215 0.0486763319345984
AT2G36830_at 9.63753463284764 9.8076069415917 9.68223714279753 9.84173112495842 10.1957040784556 10.3318279398647 10.8047879949602 11.5147621897679 11.2183030142237 10.763173048435 12.2175540056585 12.024513194007 11.4303593950666 11.8035870245198 11.8505368825379 11.6229580915741 10.9425950676572 11.8301350295282 10.8036642914793 0.0864484692914353 0.0824013101788874 0.0818913654350635 0.08724951071774 0.079840690583408 0.0849764479759119 0.0801077861791058 0.0787494411652007 0.0880351839061645 0.0827949294894302 0.0787494411652007 0.0787494411652007 0.0791313450232567 0.0794552810252585 0.080814825666683 0.0787494411652007 0.0857826900180343 0.0787990215360959 0.085719196788486 2 2|0 +|/ 15452736 15453328 15453029.4 15452504 15453653 + gene protein_coding_gene FALSE TRUE AT2G36830.1 GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic protein 1.1) (Gamma-tonoplast intrinsic protein) (Gamma-TIP) (Aquaporin-TIP) (Tonoplast intrinsic protein, root-specific RB7) (TIP1.1) [Arabidopsis Thaliana] (GB:P25818;GB:P21652;GB:Q42075;GB:Q8L5T8); similar to TIP2 (TONOPLAST INTRINSIC PROTEIN 2), water channel [Arabidopsis thaliana] (TAIR:AT3G26520.1); similar to tonoplast intrinsic protein bobTIP26-2 [Brassica oleracea var. botrytis] (GB:AAN05780.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.179300924999941 1.57756405038073 0.143273925350928 1 0.515850636091874 21.5488539828378 0.179300924999941 0.131448201637527
AT3G44110_at 10.4195485930559 10.5084229957770 10.6320384907777 10.7388634119401 10.760174088401 10.7411115886687 10.6673779796379 10.8691405870533 10.0989511028903 10.5469289738658 10.6031078851789 10.4961403671868 10.5137942909076 10.5826898370314 10.5662726498136 10.5699129167765 10.4258791242103 10.4537353826196 10.4348710061562 0.0656303898315063 0.0627198911748755 0.06266060805373 0.0621011574766834 0.0633272438482801 0.0640948887613036 0.0640409256007592 0.067607179893964 0.0810156158798768 0.0642617775092166 0.0640337605399844 0.0621011574766834 0.0636109637535905 0.0665234515610983 0.0648134402343201 0.0622922698734648 0.0692860384475283 0.0638003893605321 0.063314570158802 3 0|3 /|- 15880125 15880608 15880333.9 15879781 15882243 - gene protein_coding_gene FALSE TRUE AT3G44110.1|AT3G44110.2 ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana DnaJ homologue 2) [Arabidopsis thaliana] (TAIR:AT5G22060.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78148.1); similar to DnaJ-like protein [Solanum tuberosum] (GB:ABB16989.1); similar to seed maturation protein PM37 [Glycine max] (GB:AAD51625.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)|Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana DnaJ homologue 2) [Arabidopsis thaliana] (TAIR:AT5G22060.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78148.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.134057775905343 1.57651271784296 0.143515271073084 1 0.514506068551082 21.1104306757571 0.134057775905343 0.0425242010355777
AT3G61180_at 8.7418781246819 8.7706557693612 9.04423643056952 8.88409588146093 9.6390040794063 8.94219446762073 9.11497807229676 8.59420150843914 8.15445619923939 8.37175137719975 8.19458912179908 8.57910088926972 8.6086543426987 8.43643640136802 8.18885421010815 8.37218671181697 8.49370883347768 8.45916945579732 8.52374946404542 0.178652298237755 0.180984453728765 0.184855808073702 0.175205797856936 0.175439285387178 0.187751742109875 0.176601965229273 0.180804333832179 0.186574575244205 0.185420158692262 0.178143609068043 0.175205797856936 0.187249276260923 0.176683578121654 0.189729860441532 0.177024727525002 0.200048198637822 0.199221454065572 0.183337427195464 3 3|0 +|/ 22657416 22658204 22657779.7 22656541 22658642 + gene protein_coding_gene FALSE TRUE AT3G61180.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63170.1); similar to ring zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29468.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.194278080850034 1.57638858225663 0.143543791333776 1 0.514347344613991 17.3496921297063 0.194278080850034 0.153153378728145
AT2G33790_at 1.37228298221938 1.07575307413669 1.14669346893126 1.52896756640237 0.637914349967099 0.969562605194021 0.732440254224964 1.04216963360321 1.61695250663519 1.55941549942446 1.11546086980878 0.850283892383321 1.26455682725396 1.29314349034280 1.44789985260655 1.28005489988098 1.02883319684852 1.42934565849973 1.51982051564191 0.209938771071824 0.21150255510099 0.213766964382210 0.216714281142397 0.209938771071824 0.217942658928844 0.213077839400179 0.21087642003455 0.216295014180906 0.228241903905793 0.209938771071824 0.209973239122573 0.224614772873379 0.211947637052205 0.216037949068089 0.211656106093891 0.220524818898076 0.223579393631001 0.220496308773139 2 2 - 14300957 14302085 14301398.545 14300637 14302347 - gene protein_coding_gene FALSE TRUE AT2G33790.1 pollen Ole e 1 allergen and extensin family protein pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G28290.2); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.168287913184907 -1.57547273096713 0.143754362349816 1 0.51317653647348 2.45276974676167 -0.168287913184907 0.114789693851144
AT4G29070_at 9.26215921694733 9.61237468457621 9.77855125210645 9.95623666980455 10.1150654753308 9.96465325277548 10.5546828153376 10.3788390731626 9.26138142075 9.78968683933578 10.0147778558029 9.52430197914443 9.6900398814201 9.74959864967383 9.46747315436454 9.99654683258334 9.92257496316542 9.83240474490155 9.38872023871407 0.122614448092970 0.117806173633892 0.122338043630376 0.118442358501997 0.118205780645264 0.118463031422222 0.123936071054056 0.126390775915424 0.130693947135241 0.126664758060867 0.124958791689416 0.123568046889183 0.118988779995745 0.129695463952945 0.123794948388394 0.119966945883429 0.129828369506607 0.125603623023385 0.130713637218238 4 4 + 14322295 14322972 14322538.364 14321819 14323313 + gene protein_coding_gene FALSE TRUE AT4G29070.1|AT4G29070.2 similar to hypothetical protein [Platanus x acerifolia] (GB:CAL07987.1); contains domain Phospholipase A2, PLA2 (SSF48619); contains domain no description (G3D.1.20.90.10) 0.148198986515222 1.57503166474661 0.143855867986898 1 0.512612829866917 19.5801424336211 0.148198986515222 0.0788810113519173
AT1G11730_at 2.47928457222298 2.71345927175885 2.66966141332315 2.6374706433313 2.30816763688640 2.67548225893304 2.5613906578506 2.65813131591434 2.85882766470975 3.21248091933453 2.61616067699953 2.89219600815973 2.72267200514879 3.04818759510095 3.64221829200798 2.53590952054369 3.04656070153911 2.59757407623143 3.38556908404648 0.229395886736194 0.232479201055187 0.248381318466929 0.224444833595771 0.236586419721724 0.226720724509523 0.235099678854624 0.221407144753640 0.235493851644869 0.227411325022000 0.227820240157622 0.235455193990239 0.227108814941743 0.224363484798204 0.225382128266945 0.229432871255007 0.227667822659663 0.229801327961590 0.227396348921624 1 0|1 /|+ 3959272 3960019 3959663.625 3957473 3960113 + gene protein_coding_gene FALSE TRUE AT1G11730.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.2); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G32430.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.147489331441035 -1.57496411589848 0.14387141901077 1 0.512526507075777 5.60786967902591 -0.147489331441035 0.0774219609404753
AT2G44830_at 2.3380217618322 2.51575332651286 2.38421460734124 2.66034072788038 1.89486590535423 2.07955691110088 2.36475457636617 2.83173587208164 2.76201833899964 3.00027247888634 2.99523761904577 2.82937010795587 3.04549133248801 2.92737572428539 3.24947275170083 2.67193586489164 2.88595041008513 2.57013472055504 3.12438674319849 0.183878009119758 0.188864638618285 0.189029465688341 0.194953157467346 0.187225354278336 0.185755727595184 0.188562382957071 0.183878009119758 0.185689479246021 0.188559606656532 0.189520187149234 0.186070577557617 0.193363564747941 0.198484759270159 0.187776613073977 0.187434078395235 0.189261870553937 0.196202634462539 0.184286708355823 2 2 + 18499280 18499775 18499501.455 18497439 18499891 + gene protein_coding_gene FALSE TRUE AT2G44830.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to putative protein kinase 5 [Oryza sativa (japonica cultivar-group)] (GB:BAD25318.1); similar to Os04g0546300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053471.1); similar to AvrPto-dependent Pto-interacting protein 3 [Lycopersicon esculentum] (GB:AAW38935.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.161588316798951 -1.5747254217156 0.14392638271642 1 0.51222148997724 5.31320392109409 -0.161588316798951 0.103835169350523
AT4G05240_at 0.850340535800098 0.822029629368284 1.01634381848704 0.986952367356719 0.699619049691702 1.14446778033149 0.552639931687426 0.957647719247707 0.709735950236607 0.792161794038331 0.689683813928047 0.854336365567262 0.9959762727749 1.00630991220696 0.665543425429357 0.722417788699023 1.14387591132528 1.24001348745620 0.769627738958637 0.224776852440926 0.224525945036387 0.221583869061313 0.218512696038893 0.223625018934590 0.218563026310964 0.220645838022849 0.222712152310124 0.241313559431761 0.220115396108269 0.225128367932160 0.219066596449853 0.228709997737205 0.224273879394631 0.225324055118181 0.228756313416117 0.218049960176692 0.223092490802107 0.218049960176692 4 4|0 +|/ 2688243 2688985 2688616.5 2688198 2689016 + gene protein_coding_gene FALSE TRUE AT4G05240.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05250.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.161887880518189 1.5747081094683 0.143930369892937 1 0.51219936846827 1.71472749562193 0.161887880518189 0.104348814810774
AT3G45460_at 3.26869913699661 3.23767788957037 3.2343927512028 3.10199923529680 2.4006222006728 3.26131977680954 2.50824973948951 3.18021118008958 3.45563530389223 3.55174037124979 3.26274106443622 2.53674649100847 2.81831086116382 3.27800552599407 3.08755419156843 3.46480844080494 3.43449928436829 2.81781220114888 3.44058785475262 0.234416037034203 0.228273057074532 0.230746451213440 0.237268715005746 0.233649912817955 0.228610159984771 0.233090331022789 0.230210840826281 0.2302063690491 0.228624424038521 0.226096991539756 0.229371379974980 0.231550181941944 0.233831577534062 0.225763498936623 0.230085816658037 0.23921648071353 0.233423379358137 0.225389507817271 3 3 - 16689751 16690567 16690327.4 16689665 16691028 - gene protein_coding_gene FALSE TRUE AT3G45460.1 zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G45480.1); similar to zinc finger family protein, putative [Solanum demissum] (GB:AAT40530.2); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.222110373972135 -1.57464933228721 0.143943907562402 1 0.512124264342093 6.30925362252926 -0.222110373972135 0.190424846045846
AT2G38720_at 1.18580446913794 1.51530426231505 1.34841994967803 1.45125643166412 1.12102061719478 1.10343152796076 1.43373173088094 1.17194301502225 1.68156676604549 1.28922023162544 1.45017309372655 1.39402079132118 1.35425527964476 1.11038885850633 1.52497509479687 1.02821662996787 1.08184584928686 0.983143699874286 1.41775141842419 0.179121500995511 0.180306781418769 0.183874534139165 0.179121500995511 0.180641988604064 0.179121500995511 0.182096957347650 0.180034035808078 0.194086537588787 0.180788500015173 0.180597523951289 0.179925650125310 0.179121500995511 0.181316724095834 0.188216358805461 0.182411787874735 0.191352715912705 0.185324437927131 0.179121500995511 2 2|0 +|/ 16198054 16199142 16198765.7 16195125 16199344 + gene protein_coding_gene FALSE TRUE AT2G38720.1 microtubule associated protein (MAP65/ASE1) family protein similar to ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT5G55230.1); similar to MAP65/ASE1; t-snare [Medicago truncatula] (GB:ABE78419.1); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.146316232136207 -1.57450571768219 0.143976989832333 1 0.511940763945694 2.64322577590122 -0.146316232136207 0.0750323520628085
AT1G69180_at 1.07642385271237 0.810269988153108 0.580956852055876 0.74233301944016 0.346953058907449 0.811915875765862 0.200565595126523 0.506946451509166 1.15163266901419 0.731112032820889 0.769826061792768 0.162995310868183 0.0921204397883967 0.802013213866207 0.892217373967965 0.51410575813854 0.772673642825908 1.02460362250347 0.912506222864915 0.206929115646019 0.206929115646019 0.212898237430271 0.214412902866193 0.207874597102374 0.210160100184556 0.220467720823946 0.207973363885349 0.215489148550339 0.222206159936385 0.218079345089047 0.206929115646019 0.208741766381535 0.208904161450474 0.206929115646019 0.206929115646019 0.210878926077625 0.214467920933058 0.210188597052028 1 1|0 -|/ 26011508 26012560 26012108.222 26011128 26012722 - gene protein_coding_gene FALSE TRUE AT1G69180.1 CRC (CRABS CLAW); transcription factor Putative transcription factor with zinc finger and helix-loop-helix domains, the later similar to HMG boxes. Involved in specifying abaxial cell fate in the carpel. Four putative LFY binding sites (CCANTG) and two potential binding sites for MADS box proteins known as CArG boxes (CC(A/T)6GG) were found in the region spanning 3.8 Kb upstream of the CRC coding region. Identical to Protein CRABS CLAW (CRC) [Arabidopsis Thaliana] (GB:Q8L925;GB:Q9LQA3;GB:Q9XHD1); similar to YAB2 (YABBY 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G08465.1); similar to transcription factor CRC [Brassica juncea] (GB:AAZ23116.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.165471325298678 -1.57440829484668 0.143999435407863 1 0.51181628974728 1.41483045480994 -0.165471325298678 0.110394742338746
AT4G37970_at 2.03228685127905 1.56920999072769 1.59019925818267 1.51901749966701 1.45861863869762 1.75635404934908 2.26214481523333 2.09584785519305 1.98234494150883 1.97327812272360 2.49795629677104 1.83621791317811 2.14155395459360 2.17613367344170 2.44044805272671 1.93081374544841 2.20187213176337 2.27740223542839 2.33805344070797 0.17908931481199 0.181023631717265 0.176871185011681 0.17994175230662 0.183722747619161 0.181936343530831 0.183406779395035 0.192916886653967 0.183199209580006 0.178674981571893 0.183940212442634 0.176871185011681 0.185531499225440 0.184263469638249 0.187122925521372 0.176871185011681 0.186950869448349 0.186230538635425 0.188311790978842 4 4 + 17851385 17852114 17851724.636 17849642 17852240 + gene protein_coding_gene FALSE TRUE AT4G37970.1 mannitol dehydrogenase, putative similar to ELI3-2 (ELICITOR-ACTIVATED GENE 3) [Arabidopsis thaliana] (TAIR:AT4G37990.1); similar to sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides] (GB:AAW45741.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.159458717264367 -1.57401946231099 0.144089050347470 1 0.511319535987216 3.92830582915738 -0.159458717264367 0.100283359796234
AT4G24170_at 0.403658171158898 1.33806001767444 0.86602254261779 1.17441781861015 0.612618195905526 1.15924587040174 0.743403548799339 0.912467028373182 0.525105065116498 1.21677283083619 0.100850265704592 0.193430797360178 0.0905254756779849 0.359394139221904 0.627839726562467 0.570862398868534 0.431286053662261 0.302911954695009 0.935871929871694 0.250341731958252 0.248153571970624 0.262639321247836 0.261338019012779 0.25694134676026 0.255494382552788 0.252678124847826 0.251923130259607 0.263404609918575 0.253662059999173 0.251084513793828 0.25060062816225 0.264597813617476 0.250693181522022 0.252473142721223 0.252130390603179 0.254358684542318 0.251234236234497 0.258391418784029 4 4 + 12546216 12546782 12546582.545 12543216 12546815 + gene protein_coding_gene FALSE TRUE AT4G24170.1 kinesin motor family protein similar to kinesin motor family protein [Arabidopsis thaliana] (TAIR:AT5G66310.1); similar to Kinesin motor domain, putative [Medicago truncatula] (GB:ABE89357.1); similar to putative kinesin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD09937.1); similar to hypothetical protein [Thellun (GB:ABB45845.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.22713337921167 -1.57377097471961 0.144146345286901 1 0.511002118522806 1.51484708756459 -0.22713337921167 0.196978381681078
AT3G18790_at 7.09004746760484 6.67166869782693 5.99307255115418 5.91353840653075 7.0948518143689 6.28386919439584 6.93644887357949 6.565882314217 6.41665559735387 6.67078041994672 6.62885336097631 6.90021626045024 6.72829865844367 6.70837078221091 6.75205557551695 6.68694056184736 6.37756645334024 6.87799386152648 6.79347591770901 0.208453462139385 0.209567232360583 0.21490232892485 0.210605837680418 0.231339242334590 0.223411114453465 0.218809353460836 0.211210425687747 0.228654467656119 0.214313442321653 0.213286609801164 0.210868810959449 0.208450770516337 0.214080367859610 0.210089318992264 0.207923973681546 0.218505975486271 0.21192084354774 0.210428379412186 3 3 + 6478204 6478722 6478411.636 6477705 6479554 + gene protein_coding_gene FALSE TRUE AT3G18790.1 similar to 2 coiled coil domains of eukaryotic ori (GB:BAD19345.1); contains InterPro domain Isy1-like splicing; (InterPro:IPR009360) -0.207056276204413 -1.57352997167233 0.144201933520961 1 0.510694290365326 13.2359262071059 -0.207056276204413 0.170998575238847
AT2G32310_at 1.12035278404968 0.995379572942976 0.991775559381574 0.873094753690361 1.10061664366057 1.09977332074796 1.09549180430272 1.03765873222675 1.05737198892578 1.13845124736953 1.16159718478380 1.03314563648399 0.76056843641017 0.631492990524633 1.25463159237491 0.599104277962524 1.60811600245641 0.929198586760291 1.44370942482651 0.188106063595692 0.194962216667068 0.188106063595692 0.198785796938379 0.190214218295031 0.192872906592995 0.188106063595692 0.191356502344794 0.198034739151541 0.195084733892703 0.200812673193188 0.188821475727427 0.192407009629172 0.195127566262930 0.192595891174053 0.190980956800606 0.193945565423181 0.193000746506671 0.19014983494366 2 2|0 +|/ 13732417 13733002 13732659.111 13731746 13733451 + gene protein_coding_gene FALSE TRUE AT2G32310.1|AT2G32310.2 similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G05290.1); similar to Os08g0536300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062363.1); similar to zinc-finger protein C60910-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01231.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07833.1)|contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) -0.130925684624048 -1.57275226912081 0.144381441385364 1 0.509701139076882 2.14447259246376 -0.130925684624048 0.0314601825212916
AT1G21312_at 1.42339295050557 1.69645393888867 1.54521592442463 1.44327574462554 0.895828548480376 1.56432423690784 1.18232189101942 2.09069998463530 1.83741489314786 1.53129901034575 1.36061408909365 1.55564528894101 1.48294751980137 1.66478986340777 1.70334102257853 1.38056597191647 1.23078038813767 1.54736584414828 1.77901451584853 0.205866820243383 0.214259311430351 0.208086763724796 0.214950525105281 0.220997791191336 0.216944826917614 0.215527995377889 0.223623472019688 0.204395449616403 0.227618920620809 0.210256383130441 0.214768070721937 0.214517961107697 0.219368829174016 0.206521371746564 0.205058361811294 0.214206918711742 0.218348493475132 0.210675724765446 1 1|0 -|/ 7462859 7463881 7463315.222 7462822 7463926 - gene protein_coding_gene FALSE TRUE AT1G21312.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G76940.1); similar to RNA-binding protein [Medicago truncatula] (GB:CAD48198.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.230604651131796 -1.57251394379385 0.144436490312875 1 0.509396848620097 3.08352201324449 -0.230604651131796 0.201591328852289
AT3G45730_at 4.57844938590535 4.89612328118195 4.22162135379447 4.2329121076738 3.71304574712972 4.00750655796338 4.06135020138505 3.91674550772802 5.71470864250523 3.81677370981218 5.29514324098978 5.47046904236956 4.21917788150649 4.99961850692197 4.55638777244021 4.26295805013722 3.99920206045322 4.37015364494173 4.33816919617498 0.212676458821645 0.222501092264634 0.217621497003523 0.219964594102707 0.219631829546860 0.215898018192765 0.219413345320944 0.212676458821645 0.231369644935884 0.219463438701633 0.216110193986855 0.214560582783924 0.212676458821645 0.214101112583011 0.214169756955667 0.219044259587787 0.227514281564298 0.214405975713483 0.223817187915824 3 3 + 16801064 16801236 16801151.182 16800965 16801567 + gene protein_coding_gene FALSE TRUE AT3G45730.1 unknown protein -0.147987030135261 -1.57190551792500 0.144577109176136 1 0.508620143874995 8.83839724674562 -0.147987030135261 0.0790505429230706
AT4G21880_at 0.238561155826684 0.406276489144683 0.386118509687156 0.166086812960814 0.266721977145488 0.448107827609592 0.728024968985524 0.566700100220647 0.460061728204498 0.838828221791063 0.508856074020289 0.536140221124408 0.401289614306431 0.707904347629537 0.696610681406357 0.725659364653139 0.179133904286104 0.89242205248312 0.786098554103899 0.209668525330530 0.204051284154295 0.207628610630205 0.217172066802826 0.205614503878767 0.209740564898983 0.204800531094062 0.205992657598363 0.213308156080296 0.219893434065561 0.204051284154295 0.206875853381579 0.206165581387487 0.205025496492503 0.204051284154295 0.210778003371149 0.211796681413406 0.209996226141723 0.21238419696325 4 4 + 11609891 11611183 11610704 11605117 11611220 + gene protein_coding_gene FALSE TRUE AT4G21880.1 pentatricopeptide (PPR) repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04790.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07992.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.141063016119051 -1.57149608499598 0.14467180434836 1 0.508097570780986 1.03882383045849 -0.141063016119051 0.0636946775311386
AT4G01690_at 10.4811470495351 10.4463354363196 10.1517568757000 9.98228596741665 10.3834146155399 10.1878355718196 10.57269577353 10.4881273112726 10.9841028546731 10.8145202986376 10.9956481931305 11.0084091038277 10.6977280459020 10.9226889637338 11.1026190082894 10.9921656411348 10.4196539594603 10.7591996358382 10.6366471877142 0.091626722412407 0.0856851070665115 0.088530177749301 0.090720445667268 0.0916214863075344 0.0900314116468898 0.0890329463673592 0.0924094295896425 0.0924924258105635 0.0853092011346087 0.0853092011346087 0.0854569202636606 0.0853092011346087 0.0883007267632893 0.088807841943131 0.087242687132942 0.097067427125713 0.0881968692148478 0.0867837128978334 4 4|0 +|/ 731598 732279 731967 729887 732433 + gene protein_coding_gene FALSE TRUE AT4G01690.1|AT4G01690.2 PPOX (PROTOPORPHYRINOGEN OXIDASE); protoporphyrinogen oxidase|PPOX (PROTOPORPHYRINOGEN OXIDASE) Encodes protoporphyrinogen oxidase (PPOX). Identical to Protoporphyrinogen oxidase, chloroplast precursor (EC 1.3.3.4) (PPO) (PPOX) [Arabidopsis Thaliana] (GB:P55826;GB:Q94F25;GB:Q9ZSI5); similar to HEMG2/MEE61 (maternal effect embryo arrest 61), oxidoreductase/ protoporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT5G14220.1); similar to protoporphyrinogen oxidase PX-1 [Nicotiana tabacum] (GB:AAD02290.1); similar to plastidal protoporphyrinogen oxidase [Nicotiana tabacum] (GB:BAA34713.1); similar to Protoporphyrinogen oxidase, chloroplast precursor (PPO I) (Protoporphyrinogen IX oxidase isozyme I) (PPX I) (GB:O24163); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937); contains InterPro domain Protoporphyrinogen oxidase; (InterPro:IPR004572) -0.135122923236174 -1.57125310311717 0.144728027745568 1 0.507787483263342 21.1737102497698 -0.135122923236174 0.0474987686156754
AT1G48550_at 5.2948050280612 6.02640299218376 6.15096954951762 5.39414024703978 6.93482522394291 6.27546783963433 5.10489523444588 4.47898497799696 4.99355030853435 4.55110846049624 4.16524804972866 4.57922601350340 4.07164905514597 4.21818807190422 4.40947599651009 4.32944772398448 4.63643827927485 4.29531878045151 4.78400858616767 0.242675305033923 0.236267232942236 0.231056994994387 0.247948417800468 0.250170777628304 0.240182580253548 0.235922909426625 0.237142479138984 0.249334139740958 0.233434739458688 0.232784994783933 0.240933949201507 0.231934354210245 0.241787830612925 0.235737145974945 0.231056994994387 0.244001682642797 0.236038259851397 0.231056994994387 1 0|1 /|- 17954485 17955303 17954926.2 17954247 17956361 - gene protein_coding_gene FALSE TRUE AT1G48550.1 vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein similar to vacuolar protein sorting-associated protein 26, putative / VPS26, putative [Arabidopsis thaliana] (TAIR:AT5G53530.1); similar to Vacuolar protein sorting-associated protein 26 [Medicago truncatula] (GB:ABE90390.1); contains InterPro domain Vacuolar protein sorting-associated protein 26; (InterPro:IPR005377) 0.262240100720927 1.57101259304817 0.144783698008771 1 0.507480578437538 10.2647346106256 0.262240100720927 0.240697947876690
AT4G31730_at 1.86102189887572 1.41826349118960 2.24075989339126 2.21075566865389 1.62393552570728 1.83002807944523 1.82586105683872 2.1497519005379 2.05119493646693 1.56681932847739 1.77096687047894 2.31730468539914 1.94194332872890 2.10048906970973 2.66163574018223 1.96545280654761 1.96286072763719 2.12851986141741 2.22911751337236 0.192944711895214 0.190091326544171 0.189362341141992 0.187972091536224 0.193449036385751 0.188109845229708 0.188807862900244 0.193977127425369 0.189303798404608 0.190924793348669 0.190409674889982 0.189831243759711 0.191209469079102 0.191836434333865 0.193407998193021 0.187629363083527 0.193605741104819 0.193245373454893 0.189220464267159 4 4 + 15361242 15361657 15361417.909 15361097 15361856 + gene protein_coding_gene FALSE TRUE AT4G31730.1 GDU1 (GLUTAMINE DUMPER 1) glutamine dumper1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24762.1); similar to At5g57685 [Medicago truncatula] (GB:ABE81292.1) 0.159873957548007 1.57096704859784 0.144794242177090 1 0.507422464235201 3.92264247051405 0.159873957548007 0.101545592500341
AT1G80040_at 8.49202993059163 8.3123749334799 8.55715104506466 8.59902209017089 8.53148740433561 8.44417058211663 8.13494145988492 8.50813167320554 8.16246045980597 8.13988575500133 8.06985580580938 8.27465485891848 8.50642768230808 8.29417875272538 8.36953907011676 8.53876526197343 8.09907804264324 8.00673741794381 8.14872954766842 0.131413122842768 0.136654010346156 0.143857812232699 0.145137294177119 0.135912701768478 0.139067706390364 0.146398173883807 0.141754188062441 0.149037617060472 0.142357614761094 0.145718572161906 0.137800832227253 0.133452100806708 0.141469168377170 0.138119829449951 0.135837330869165 0.151106000597618 0.147640011973546 0.140172450030030 1 1|0 -|/ 30114342 30115773 30114922.5 30114040 30116173 - gene protein_coding_gene FALSE TRUE AT1G80040.1|AT1G80040.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32440.1); similar to Ubiquitin system component Cue; UBA-like [Medicago truncatula] (GB:ABE77893.1); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.145317152597182 1.57084363977272 0.144822816396821 1 0.507265001036359 16.6575452393796 0.145317152597182 0.0736091354125003
ATCG00360_at 8.82155375140423 9.28368936887926 9.40014026997276 9.56953078458827 9.06138949862858 8.86274898819088 9.74813003399105 9.3641329484998 10.2468773518084 10.5107069256112 10.827984121766 11.526972789967 10.4087566066037 10.7264195117679 10.5450178426416 10.9979804469037 10.2851090080540 10.5938857924002 10.2154561330459 0.179824948261213 0.176488660624948 0.179615049525646 0.176232133041881 0.168167380810682 0.174977783316599 0.169439674642040 0.183473847371806 0.168465662837237 0.172469216450978 0.175758076414342 0.184303360064960 0.168167380810682 0.175342048079956 0.170250217326618 0.173310567348190 0.179033071168243 0.178521445848255 0.172652145582430 C C|0 -|/ 42586 43673 42896.375 42584 43751 - gene protein_coding_gene FALSE TRUE ATCG00360.1 Encodes a protein required for photosystem I assembly and stability. In Chlamydomonas reinhardtii, this protein seems to act as a PSI specific chaperone facilitating the assembly of the complex by interacting with PsaA and PsaD. A loss of function mutation in tobacco leads to a loss of photosystem I. Identical to Photosystem I assembly protein ycf3 (ycf3) [Arabidopsis Thaliana] (GB:P61843;GB:P56787;GB:Q9XQP0); similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to Photosystem I assembly protein ycf3 (GB:P61843); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.166872410588042 1.57043414348328 0.144917666962248 1 0.506742558213964 19.7955957397701 0.166872410588042 0.113370524632416
AT1G75560_at 7.17569731685095 7.1487517859469 6.56058165052289 6.91559720314225 6.97952087834576 6.72066713393462 7.7511589571214 7.55398858298635 6.71770409812193 6.7883544378823 7.29749271741538 7.1230490517639 6.70000275379212 6.88180189651443 7.56153356941974 6.9077169391804 7.11983181234731 6.65019433249763 6.64467909742886 0.151633515546341 0.156152029572813 0.154136025672464 0.149280317447863 0.146522610508328 0.153882486007313 0.154630560938373 0.156524506671672 0.170065008021161 0.154697519557983 0.148513507238609 0.148233382363352 0.153944967571579 0.149810439177131 0.148069267480504 0.149704497938393 0.158406457137062 0.152328253240015 0.152711584736988 1 1|0 -|/ 28375275 28375734 28375475.2 28374802 28376902 - gene protein_coding_gene FALSE TRUE AT1G75560.1|AT1G75560.2 zinc knuckle (CCHC-type) family protein similar to CSDP1 (COLD SHOCK DOMAIN PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G36020.1); similar to Os10g0545300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065207.1); similar to putative zinc finger protein [Hyacinthus orientalis] (GB:AAQ89709.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.150008552300678 -1.57016375451620 0.144980326228094 1 0.506397635706294 13.9743031529034 -0.150008552300678 0.0834696879112385
AT3G62890_at 1.57153797033309 1.63551227405799 1.37494755736168 1.76961341268018 1.22962814189724 1.01372780435044 1.42640792851192 1.31051337997470 1.84682071389352 1.61333248827981 0.844228576616006 1.10291963658536 1.67272997458301 1.74804194736771 1.55637967205604 1.46276998029857 1.92639345879875 1.39010107817262 1.40471723748659 0.204552030543936 0.205844025251141 0.205191179665929 0.206816107140525 0.201638834720057 0.202994127791122 0.212584669128822 0.201638834720057 0.20360270756356 0.220018286491485 0.202321650414156 0.203052672581043 0.202308864251585 0.208514990754949 0.207030229707691 0.202511090301632 0.213147279891851 0.205190024267301 0.209381577763396 3 3 + 23258224 23258771 23258463.2 23257132 23259038 + gene protein_coding_gene FALSE TRUE AT3G62890.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G40405.1); similar to Os01g0176300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042180.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.148845799236960 -1.57010834386036 0.144993169879603 1 0.506326955321467 2.9587705688691 -0.148845799236960 0.0811510781914151
AT1G80400_at 6.96894199037446 7.22034844006443 7.35421302825242 7.38240915566222 7.83015531751331 7.47127619016557 7.92489408062783 7.74048685028736 6.62869808513443 6.30964666379642 7.05604201183608 7.05455904330313 6.57829002750074 6.89415866896143 6.61237508016484 6.81970067285492 6.20428557161528 6.25337047407283 6.35484837439818 0.248039493902642 0.248039493902642 0.260609389925702 0.250363764314914 0.252471785333478 0.261991660662703 0.248786921495289 0.248039493902642 0.267836323768118 0.259815333673097 0.248039493902642 0.248524862735516 0.252077333625157 0.249013310744994 0.25502005210404 0.248039493902642 0.268577251480276 0.268715600320889 0.255995466240515 1 0|1 /|+ 30231507 30232185 30231741.778 30230068 30232467 + gene protein_coding_gene FALSE TRUE AT1G80400.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G32600.1); similar to RING zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19217.1); similar to Os05g0179000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054802.1); similar to Os02g0787500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048342.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.149439450952754 1.56974824508541 0.145076661517089 1 0.505867659098705 14.0441716657343 0.149439450952754 0.0824148157243115
AT4G14815_at 1.12743151577403 1.58020708070866 1.61408561879172 1.63300797907915 1.31305473579515 1.29073820255757 1.53053092625964 1.47167813358903 1.81343729456267 1.87674871287962 1.66852770482922 1.65128613961912 1.69385542867818 1.20754801538533 1.27743856076781 1.05710006389492 1.48368791646172 1.30776473016707 1.55781605717764 0.205949675643264 0.205949675643264 0.214418872985679 0.213747081016181 0.210882661486125 0.210161534852438 0.21695168978934 0.218915146314786 0.222085650348675 0.207890752210008 0.211083687025775 0.205949675643264 0.211654038552270 0.211064091336787 0.206771160212337 0.211114279038774 0.210686754607813 0.208333103087972 0.208232674184384 4 4|0 +|/ 8505174 8505707 8505348.2 8505044 8505947 + gene protein_coding_gene FALSE TRUE AT4G14815.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G22600.1); similar to lipid transfer protein [Capsicum annuum] (GB:AAV97731.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.147836615795748 -1.56966108190025 0.145096877281051 1 0.505756494296303 3.02895931982707 -0.147836615795748 0.0791761393124724
AT3G51370_at 9.55090297297162 9.46006018053104 9.65525034229122 9.47877187068405 10.0542283352269 9.53716837944318 8.9750924020288 8.82682349121139 9.61926490979503 9.22376889139196 9.40898462671963 9.11891353930323 9.47925496397045 9.3371183744209 8.90692774592547 9.42800470047833 9.25721123342906 9.08789436132196 9.40011372187191 0.110451555382668 0.108296397175975 0.109628229672736 0.112892305799489 0.113913303286506 0.113423518905431 0.114069782933134 0.116314751487092 0.123919501117235 0.109077118158372 0.110427341472158 0.110717186197599 0.115369448993631 0.109411619781524 0.111467711203216 0.111098660713302 0.118287716095900 0.116397772730378 0.109890504090716 3 3|0 +|/ 19081706 19082923 19082455 19080342 19083174 + gene protein_coding_gene FALSE TRUE AT3G51370.1|AT3G51370.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2c-like protein [Thellun (GB:AAM19705.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.158395577867726 1.56949336842193 0.145135782008468 1 0.505542608930074 18.7759978472397 0.158395577867726 0.0992211192525023
AT3G57850_at 2.43376858482267 2.54666292015281 2.38712797981045 2.57632872621759 2.15074327046218 2.34989199675246 2.13147037175619 2.59876193170777 2.70143974558685 2.89966172827494 2.34615524680359 2.48537008333879 2.30218127199137 1.95672942837519 2.52623231429376 2.26990754059539 2.62926312247991 2.71163338609256 2.36314324761569 0.179179698691116 0.178721855886787 0.177212894806638 0.178310209201743 0.192231947004454 0.181552207248555 0.183968067404303 0.186255743926384 0.184112998120836 0.179075325784698 0.185239937188009 0.185077552557879 0.182077605948196 0.184804078128953 0.181338903540837 0.179352290898651 0.185450258199291 0.178553648169932 0.180702150398780 3 0|3 /|+ 21435589 21435704 21435635.333 21435354 21435768 + gene protein_coding_gene FALSE TRUE AT3G57850.1 similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G57840.1) -0.156478575022682 -1.56941511811949 0.145153936959026 1 0.505442820828048 4.92593561757967 -0.156478575022682 0.0958172388426405
AT2G21100_at 1.28423023331261 1.02864155603251 1.65410880542520 1.31797298270264 1.03590270451681 1.44638720306264 1.20172928910891 0.918511462539947 1.29529169235031 1.36510564692603 1.69798365201610 0.857723890775624 1.25941176804995 1.26591547125792 1.33195596591515 1.01048635464446 1.6317472520963 1.18694596561335 0.946829609762365 0.231931927865849 0.23407586555614 0.233974094626707 0.231178991181665 0.227924540053214 0.226774931618437 0.226774931618437 0.229979656784274 0.233393311188359 0.236187267315143 0.234275342430001 0.226774931618437 0.228778388874097 0.226774931618437 0.227314173525610 0.226774931618437 0.230251196102223 0.232498588772885 0.231486313184134 2 2 - 9055798 9056158 9055951 9055212 9056485 - gene protein_coding_gene FALSE TRUE AT2G21100.1 disease resistance-responsive protein-related / dirigent protein-related similar to disease resistance-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G65870.1); similar to dirigent-related protein [Tamarix androssowii] (GB:ABE73781.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.166588547855768 1.56940978450228 0.145155174490493 1 0.505436019281755 2.47727566611716 0.166588547855768 0.113085989212813
ATCG00500_at 9.91775895672322 10.6538079248942 10.4295074066705 10.5867599374832 10.0348566528519 9.79990550616737 10.3740390781574 10.6017499883185 10.942863847841 10.6442643035158 11.3184888586183 11.6388091663127 11.3949993494861 11.3530440846159 11.3473952559266 11.4020903165717 10.8640904214363 10.9262382560005 10.6191598409988 0.0971820103176349 0.0919583930531483 0.103209042426509 0.0915317234080625 0.095714185346391 0.101800792253032 0.0965298572187648 0.0934988165172888 0.0995708772942445 0.092401086539601 0.0914881998114956 0.0935513260474429 0.0930886112267257 0.099792226718913 0.0916579400927723 0.09008355018983 0.0998972172569743 0.091372396195401 0.09008355018983 C C + 57955 58495 58256.545 57075 58541 + gene protein_coding_gene FALSE TRUE ATCG00500.1 Encodes the carboxytransferase beta subunit of the Acetyl-CoA carboxylase (ACCase) complex in plastids. This complex catalyzes the carboxylation of acetyl-CoA to produce malonyl-CoA, the first committed step in fatty acid synthesis. Identical to Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) (accD) [Arabidopsis Thaliana] (GB:P56765); similar to Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (ACCase beta chain) (GB:P48937); similar to acetyl-CoA carboxylase carboxyltransferase beta subunit [Nothofagus nitida] (GB:AAW70095.1); similar to acetyl-CoA carboxylase beta subunit [Nothofagus gunnii] (GB:AAT79506.1); contains InterPro domain Carboxyl transferase; (InterPro:IPR000022); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, N-terminal; (InterPro:IPR011762); contains InterPro domain Acetyl-CoA carboxylase carboxyl transferase, beta subunit; (InterPro:IPR000438) 0.185566760802854 1.5693739548085 0.145163488107131 1 0.505390328824683 21.3078350786114 0.185566760802854 0.142026200012573
AT1G72730_at 2.09024065322790 2.12380318661074 2.02516068419187 1.83174158637507 1.65899390207187 1.82500249877499 1.64635887577316 1.93386102654352 1.64934814153741 2.03843709194385 2.21525065868018 2.62289275497946 2.20324737311329 2.45927513992992 2.53855280727615 2.12042101519889 1.69321572175812 1.86693384619972 1.76438826978737 0.178565407266255 0.183950860170940 0.179165420972131 0.183957269988510 0.182188825138681 0.180501789456841 0.184488580639580 0.180636562412225 0.185858249960191 0.186118020956177 0.186146898636115 0.188397337930138 0.192161998293347 0.181465961163152 0.186873083386062 0.178565407266255 0.194466449223300 0.184952051814470 0.181727784536080 1 1 - 27381702 27382249 27381982.091 27381460 27383844 - gene protein_coding_gene FALSE TRUE AT1G72730.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Identical to Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) (DEAD-box ATP-dependent RNA helicase 23) (TIF4A-3) [Arabidopsis Thaliana] (GB:Q9CAI7;GB:Q9ZS01); similar to EIF4A1 (eukaryotic translation initiation factor 4A-1), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G13920.1); similar to EIF4A-2 (eukaryotic translation initiation factor 4A-2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G54270.1); similar to Eukaryotic initiation factor 4A-2 (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (GB:P41379); similar to Eukaryotic initiation factor 4A-15 (ATP-dependent RNA helicase eIF4A-15) (eIF-4A-15) (GB:Q40468); similar to Eukaryotic initiation factor 4A-10 (ATP-dependent RNA helicase eIF4A-10) (eIF-4A-10) (GB:P41382); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.142120614600188 1.56910154142596 0.145226710199449 1 0.505042964420725 3.90807771789523 0.142120614600188 0.0667447703383825
AT1G67370_at 1.09846670593068 1.44022529689563 1.43247050989213 1.44635878764327 1.24934996194245 1.84047018248356 1.39196276150281 1.49072802326882 1.30891315021733 1.29460408610634 1.14848062046810 1.26036223223803 1.34095201203069 1.20651622171731 1.77348495467330 1.23892906843112 1.90403918428677 1.41734297537244 1.01805212354110 0.220479329758934 0.21867092192107 0.216262177789131 0.213232158125162 0.213766236077903 0.214006198026716 0.212067739295927 0.214771054180077 0.222609169459198 0.219895876241835 0.214678277720220 0.213172578970212 0.211951187494097 0.214853486864651 0.213007801671684 0.213148815158809 0.213595700560497 0.211646606071331 0.219481481396960 1 1|0 -|/ 25243022 25244008 25243473 25242780 25247500 - gene protein_coding_gene FALSE TRUE AT1G67370.1 ASY1 (ASYNAPTIC 1); DNA binding meiotic asynaptic mutant 1 (ASY1) similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to aysnaptic 1 [Brassica oleracea var. alboglabra] (GB:AAN37925.1); contains InterPro domain DNA-binding HORMA; (InterPro:IPR003511); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.170445142810748 1.56852292877750 0.145361075318465 1 0.504305273776825 2.73298062633182 0.170445142810748 0.119416434502502
AT2G44370_at 2.38608299633927 2.20895824099728 1.60043482249916 1.84916790455685 1.60305943735009 1.46635634844563 1.09558451321263 0.909542438646593 1.8969136162023 1.74333143143705 1.54334277788721 1.29963548267670 1.60627284821533 1.07262066519734 1.60314249674976 1.64879220050189 1.87594983089296 1.61459337147413 1.74892310315183 0.204356812087362 0.217806816825025 0.202004361252348 0.204186537432467 0.202702274717036 0.218705200087339 0.199731015141231 0.207982786441346 0.202638169248804 0.203815925721776 0.204148618305460 0.205007482995593 0.218884903364681 0.198674824627547 0.204635323877097 0.200461483630723 0.215568868264696 0.208539839346970 0.204178862284472 2 2 - 18329291 18329739 18329566.364 18329070 18330197 - gene protein_coding_gene FALSE TRUE AT2G44370.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G17740.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21314.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.141816546741825 -1.56807459744011 0.145465261280927 1 0.503733794746813 3.30461488415418 -0.141816546741825 0.0662464268008865
AT2G45680_at 3.85415307167993 4.0363224648871 4.22323398694268 4.54374646235817 3.32747676489345 3.64083227196079 3.46821327115966 3.81778494056966 3.65508920667412 2.87552790492202 3.555727064697 3.66433160461652 3.55366532985786 3.48638065338428 3.2240936182897 3.77303346881044 3.37612026108888 3.28247095312652 3.39354785473610 0.217989782910966 0.207598098324728 0.221416511790827 0.219568434983320 0.207479835372533 0.212573977404262 0.205444191629762 0.208274218522936 0.211814907367092 0.215361040753516 0.216144261366567 0.2051977288073 0.205108314761603 0.205445063892310 0.209293574622676 0.202699444566596 0.208806246300848 0.214872290726012 0.212549568353820 2 2 - 18827816 18828309 18828042.091 18827316 18828963 - gene protein_coding_gene FALSE TRUE AT2G45680.1 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G51910.2); similar to Os08g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062409.1); similar to PCF2 [Oryza sativa (japonica cultivar-group)] (GB:BAA23143.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.160563407460585 1.56778141821999 0.145533427337791 1 0.503360137965146 7.26273683331209 0.160563407460585 0.103298699001222
AT1G53830_at 1.48752043247548 1.87771047462871 1.75087407031949 1.54615247878780 1.49338040559380 1.76346273828670 2.42989069892345 2.0747074047966 1.82142572413574 2.14417742811932 2.10753168166641 1.86888463571679 2.00974658639825 1.95098338715085 2.09029170621765 2.10116439966314 1.29085120144786 1.75210852633848 1.71853707374924 0.20557112013212 0.193525542421886 0.19994784091833 0.198768395319382 0.193782437756937 0.18855186338157 0.191494440582872 0.191951216391222 0.192690017311100 0.192864723575923 0.200581468164157 0.192181457369571 0.191792096823816 0.197865592079290 0.18855186338157 0.190435435873913 0.200014318582493 0.194065932445532 0.193750815195311 1 1 + 20103833 20104327 20104029.091 20102190 20104557 + gene protein_coding_gene FALSE TRUE AT1G53830.1 ATPME2 (Arabidopsis thaliana pectin methylesterase 2) encodes a pectin methylesterase Identical to Pectinesterase-2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) (PME2) [Arabidopsis Thaliana] (GB:Q42534;GB:Q9SSB0); similar to ATPME3 (Arabidopsis thaliana pectin methylesterase 3) [Arabidopsis thaliana] (TAIR:AT3G14310.1); similar to pectin methyl esterase [Solanum tuberosum] (GB:AAF23892.1); similar to pectin methylesterase [Nicotiana tabacum] (GB:CAB95025.1); similar to Pectinesterase [Medicago truncatula] (GB:ABE92634.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501); contains InterPro domain t-snare; (InterPro:IPR010989) -0.163628986276143 -1.56760290779460 0.145574945832834 1 0.503132647017989 3.69854167509802 -0.163628986276143 0.108523190635425
AT2G46500_at 8.02736491862763 8.16581883276767 8.50901835363895 8.56452368386653 8.59811282460289 8.21964647216491 8.28528789951396 8.1752486843934 8.17678697071216 7.97918435342287 8.2357792210903 7.90718890689194 7.9736353403609 8.15343404234347 7.61769870261128 8.41758668266195 8.25045708345075 7.643017128039 7.97854539552741 0.163746131404838 0.162752476099792 0.164591996387197 0.165324686483337 0.16283112967155 0.171794675034672 0.169254364114167 0.170859598945762 0.178423678576487 0.166577328631157 0.161206465663164 0.167598674705128 0.167157157302183 0.161206465663164 0.171308388690878 0.164004289107297 0.166687530793156 0.167526534527597 0.166384330099782 2 2 - 19093825 19094428 19094113.727 19093633 19096053 - gene protein_coding_gene FALSE TRUE AT2G46500.1|AT2G46500.2 phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein similar to phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT5G24240.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago truncatula] (GB:ABE80823.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.144702990809853 1.56756437990879 0.145583908123067 1 0.503083549708464 16.3529719811897 0.144702990809853 0.07292888540581
AT2G32720_at 5.44904541994571 5.81747258071383 5.43717569135687 5.46200673793021 5.71063149419823 4.87726544829074 5.73924510314417 6.16983999018113 6.21850014383312 5.92920247564672 6.957559497372 7.36825484134479 6.32957542238316 7.0799345906057 7.44243127431354 6.59691021656412 6.02564351857273 6.69360602513209 5.76850976500024 0.213990347055982 0.199961810643893 0.206858647551296 0.202603287004108 0.210198976940196 0.229431746411784 0.21651109594384 0.215006721359552 0.204315217103059 0.20456615013997 0.199961810643893 0.20735615769496 0.199961810643893 0.224424787184963 0.206660465826185 0.201608356975110 0.209004201887232 0.208612190040882 0.200887290970305 2 2|0 -|/ 13884095 13885491 13884482.7 13883851 13885608 - gene protein_coding_gene FALSE TRUE AT2G32720.1 B5 #4 (cytochrome b5 family protein #4); heme binding / transition metal ion binding member of Cytochromes b5 Identical to Probable cytochrome b5 isoform 2 [Arabidopsis Thaliana] (GB:O48845); similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAIR:AT5G48810.1); similar to cytochrome b5 isoform Cb5-B [Vernicia fordii] (GB:AAT84459.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.208768848953565 1.56680158489901 0.145761447474816 1 0.502111644727883 11.9747404172765 0.208768848953565 0.174456446660896
AT3G56120_at 4.8686781772997 4.85627605979198 4.33169986530114 4.26425611493798 5.47451646312031 4.35134997033764 5.43162387913496 5.2751009831073 4.6220257654512 4.69838424488876 4.81494751499572 4.82597784382224 4.85843550748576 4.72228448627605 5.11651657135398 4.67261566253398 4.77269236337662 5.12564366829513 5.11797616642568 0.189030337349581 0.189049723349309 0.191420745185156 0.194756426367473 0.190193033794314 0.187484608513769 0.184671680561988 0.190058734088399 0.192888478834641 0.192421485089947 0.189801820221989 0.186642526093773 0.185928444488344 0.191120621639882 0.189950838247109 0.187451145882550 0.202884948261115 0.191240878749 0.183685394347563 3 3|0 +|/ 20836037 20837279 20836602.3 20834129 20837522 + gene protein_coding_gene FALSE TRUE AT3G56120.1 Met-10+ like family protein similar to Met-10+ like family protein [Arabidopsis thaliana] (TAIR:AT4G27340.1); similar to putative met-10+ protein [Oryza sativa (japonica cultivar-group)] (GB:BAD20131.1); contains InterPro domain Protein of unknown function Met10; (InterPro:IPR003402) -0.225810180698498 -1.56663016482566 0.145801371253215 1 0.5018932711873 9.6949049863902 -0.225810180698498 0.196606005942695
AT3G52970_at 1.20181589789487 0.801640771821506 0.537746337324234 1.19592879807632 0.657150796555761 0.9093734540198 0.80920447534515 0.884480665962341 1.09934527004955 0.837285548870396 0.7122932239274 0.708486927474217 0.827310249951203 0.592806111809055 1.15203542553725 1.06416546700353 0.844535484443525 0.132785680080041 1.13520536877377 0.194175922207712 0.188878889960340 0.191633073243679 0.190578466157136 0.191396193432043 0.193303953971034 0.189243230417917 0.191433022490296 0.188878889960340 0.196981638239981 0.193919818586728 0.192253492635452 0.190112200381805 0.208135993385249 0.194047017965975 0.193332473063958 0.194293262913297 0.191848269096448 0.193197405390448 3 3 - 19652384 19652877 19652662.818 19652284 19654254 - gene protein_coding_gene FALSE TRUE AT3G52970.1 CYP76G1 (cytochrome P450, family 76, subfamily G, polypeptide 1); oxygen binding member of CYP76G similar to CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45550.1); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45570.1); similar to cytochrome P450 [Petunia x hybrida] (GB:BAC53892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.184439340440783 -1.56659121410837 0.145810444217070 1 0.501843653523597 1.76379150821309 -0.184439340440783 0.140869797627320
AT1G79340_at 8.29186582154811 8.67673807038247 8.24784517568701 8.45774816914026 8.4513703886554 7.98860642714714 8.27177785557398 8.3213498486769 7.93755463312499 7.47771770764298 8.1555028988332 8.42522380743963 8.17577263403309 8.48419222432033 7.9912835072916 8.106301793989 7.56822632118087 7.61072873064285 7.47861470931997 0.154709964139246 0.156500541265395 0.156134883414882 0.151591932082551 0.160955268556443 0.166262353544998 0.163062317041689 0.157802932595972 0.168773736267933 0.170083013836203 0.154054346020748 0.156354369125317 0.158402683334444 0.153087316822255 0.159955979830278 0.151591932082551 0.174241094038165 0.159729147969219 0.165514729581077 1 1 + 29848668 29849226 29848925 29847664 29849531 + gene protein_coding_gene FALSE TRUE AT1G79340.1 latex-abundant protein, putative (AMC7) / caspase family protein similar to AMC6/ATMCP2B (TYPE-II METACASPASES), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G79330.1); similar to latex-abundant protein [Hevea brasiliensis] (GB:AAD13216.1); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) 0.164658973732877 1.56523359335472 0.146126989217287 1 0.500114700668504 16.1863875561409 0.164658973732877 0.110645931203391
AT1G04350_at 10.0653896360436 10.0788839570267 10.8142639490717 10.7640648784890 10.9920413119491 10.6877929095426 11.1025124642484 10.7750324493112 10.2858025459048 10.7830272200990 10.5824283764767 10.2716866844360 10.6193975966009 10.647963737381 10.2298472183853 10.9482216823770 10.8769585668064 10.3985141836694 10.6932912930843 0.0967173613211575 0.094827543867501 0.0942985004939494 0.0942536914742716 0.0931437218129677 0.0975172704555704 0.095118828161176 0.0953009402146639 0.0998422800944035 0.0934839894955913 0.093857117015229 0.0943614175589567 0.0918050761855055 0.0967630592291172 0.0954570653138221 0.0915477462858588 0.103745422071596 0.105860650061508 0.0918256672316135 1 0|1 /|+ 1166021 1166505 1166251.889 1165164 1166767 + gene protein_coding_gene FALSE TRUE AT1G04350.1 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G59540.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.146794852504747 1.56523171798977 0.146127426895181 1 0.500112312981950 21.2396231655250 0.146794852504747 0.0778769625934504
AT3G58670_at 6.66652216299774 7.02187974916259 7.19292593536834 6.57801192497921 7.6889105996713 7.51764367686283 6.60313879252256 6.2505338993406 6.15461437522831 5.92890494885917 5.37333528912598 5.56107189369889 5.97000468638185 5.75608702703331 5.49379509019158 5.99636334283338 6.23262575214352 5.4907110404146 5.84277202476265 0.222309010267023 0.218419629269524 0.221364830358906 0.225478630728784 0.235166246748756 0.231340825653783 0.232146490252081 0.220733953017875 0.232296183527540 0.222160991536889 0.218247342326407 0.220182409263046 0.222915152800948 0.218479615421283 0.224589217053972 0.218247342326407 0.226265132436767 0.224811528008083 0.224375504869063 3 3 - 21715040 21715895 21715342.909 21714367 21717056 - gene protein_coding_gene FALSE TRUE AT3G58670.1|AT3G58670.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42670.1); similar to OSJNBb0040D15.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04411.2); similar to Os04g0151900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052116.1); similar to H0820C10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65971.1); contains InterPro domain Protein of unknown function DUF1637; (InterPro:IPR012864); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.183836599412864 1.56431089344387 0.146342469841624 1 0.498940140488247 12.7947857000354 0.183836599412864 0.140383584195658
AT4G02690_at -0.0159248018350781 0.586848299854311 0.85178729737223 0.295963944544909 0.739064648844486 0.806074451164587 0.696061486773842 0.523687825551136 1.21565927546475 0.710831162504289 0.82776160580837 0.600177869065894 1.00972165519091 1.10457995883204 0.92158892455987 1.02824624198225 0.682083858571033 1.07996535275370 0.346369077589081 0.232933368289343 0.232933368289343 0.236363242640484 0.233925886606992 0.232933368289343 0.235469441638715 0.235100466059306 0.232933368289343 0.242314985250876 0.239632998675277 0.236924305874204 0.235286321987122 0.232933368289343 0.239223227759778 0.237040014272025 0.238920714110495 0.243487098645518 0.232933368289343 0.232933368289343 4 4|0 +|/ 1186238 1187462 1186646.6 1185751 1187816 + gene protein_coding_gene FALSE TRUE AT4G02690.1 glutamate binding similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT1G03070.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.187350113860818 1.56430659758920 0.146343473712907 1 0.498934673009526 1.39263815496624 0.187350113860818 0.145456331596011
AT3G29200_at 5.56368549044579 5.91856227804595 6.03880081262549 6.36980426028215 5.36831022820741 5.76210996315127 7.31078233619107 7.71665772899987 6.76402584662379 7.06066826709193 7.34766964604292 7.27895304729262 6.90459393560257 7.40518998737821 7.68944286201046 7.45733935381736 7.07558084067889 7.15096525068846 6.87033085523392 0.19037695161714 0.187827795989939 0.185065621973546 0.189669129134343 0.194653855618911 0.195608996668918 0.190592565084610 0.185669533778864 0.191103659451130 0.184977292821658 0.183454112701173 0.184831727137200 0.185101710431074 0.192120467161504 0.188978047115915 0.186959017484787 0.189522152891315 0.185228705489642 0.188436640111165 3 0|3 /|- 11165892 11166746 11166329 11165630 11167653 - gene protein_coding_gene FALSE TRUE AT3G29200.1 CM1 (chorismate mutase 1); chorismate mutase L-ascorbate peroxidase Identical to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1) (CM1) [Arabidopsis Thaliana] (GB:P42738;GB:Q9LS75;GB:Q9SUJ5); similar to CM3 (CHORISMATE MUTASE 3), chorismate mutase [Arabidopsis thaliana] (TAIR:AT1G69370.1); similar to putative chorismate mutase [Fagus sylvatica] (GB:ABA54871.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) -0.176145216615849 -1.56429205655989 0.146346871759304 1 0.498916166219389 13.3496183981214 -0.176145216615849 0.128959272159786
AT3G04620_at 2.47362877750954 2.37656420471748 2.36562561083389 2.16361350895446 1.99437473093093 2.32060322344575 2.33427331673629 2.45109718394056 2.99955406410605 2.99176006976242 2.94762699016273 2.50415718510589 2.86857839176265 2.50664303736664 2.62286176220150 2.70895869810931 3.12644267631991 3.00941116126548 2.63788038551048 0.195574772230516 0.192308547229507 0.192308547229507 0.204542493250644 0.198728919642771 0.199617937243893 0.201616925839052 0.199823162911803 0.201930529290372 0.204386957348630 0.197065708057989 0.192308547229507 0.195027431026918 0.195003934303806 0.196809635126637 0.192308547229507 0.209380208535247 0.196400599572481 0.196102751236008 3 3|0 -|/ 1255707 1256717 1256203.4 1255532 1256873 - gene protein_coding_gene FALSE TRUE AT3G04620.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G29250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15498.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) -0.143699893762130 -1.56408334694312 0.146395652031119 1 0.498650546819064 5.14158915009016 -0.143699893762130 0.071415880688114
AT3G56240_at 12.2033557938235 12.3706888636007 12.5216510278000 12.6286950272439 12.6217037236925 12.3833510501599 12.4923227399364 12.6698457147943 12.5895947394556 12.4859392876219 12.6503958277668 12.7402509091614 12.7811992269658 12.5522656695464 12.0138130932394 13.0222383196649 12.8308255221316 12.5193561930210 12.3172905836076 0.0664184959298604 0.0659764557939214 0.0669537214932352 0.0681619962180371 0.0669736928847684 0.0678935934111516 0.0661850698773433 0.0659764557939214 0.0720663296847301 0.0674847816827499 0.0698145357146401 0.0659764557939214 0.0663598492452961 0.0678523241822224 0.0659764557939214 0.0667886434313618 0.0681832406792979 0.0665602601493669 0.0671738682823089 3 0|3 /|- 20874445 20874870 20874610.3 20874236 20875523 - gene protein_coding_gene FALSE TRUE AT3G56240.1 CCH (COPPER CHAPERONE) CCH protein belongs to a family of eukaryotic proteins that participate in intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. similar to ATX1, metal ion binding [Arabidopsis thaliana] (TAIR:AT1G66240.1); similar to copper chaperone [Plantago major] (GB:CAH59420.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.139657577072063 1.56407078922929 0.146398587512516 1 0.498634565616455 25.0379857253392 0.139657577072063 0.0618619418642417
AT3G48410_at 2.12788869013555 2.61387263287969 2.08991151061549 2.40091183492020 2.62597910960258 2.41139663421309 1.68458621051384 2.1407157339269 1.73042319882281 1.87258775627475 2.02529771973753 1.83257712846575 2.19691005361412 1.81432056958086 1.42707416912799 1.58583076240218 1.78657856638903 1.97464257575278 1.53794911585099 0.218736612965240 0.215524652026451 0.214268813506053 0.219777258035551 0.225518669557337 0.217499314036821 0.23017345475402 0.214268813506053 0.223300940758877 0.21870352010295 0.220440741246885 0.214949005632957 0.221203411928189 0.224285760575883 0.214874251356152 0.214268813506053 0.216449494727929 0.214748857151004 0.217962048905355 3 3 - 17936893 17937450 17937205.909 17936687 17939173 - gene protein_coding_gene FALSE TRUE AT3G48410.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G36290.1); similar to Os02g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047024.1); similar to Os04g0412000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052736.1); similar to H0717B12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67158.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.178517270812388 1.56398868675382 0.146417780989793 1 0.498530082232339 4.03393644465923 0.178517270812388 0.132587587155024
AT1G79800_at 1.85743700184014 1.85990591616007 1.85618212879356 2.02996224744461 1.40243080449913 1.97015977193548 1.69821273462433 1.31883789722573 1.58337728085952 1.4152141539307 1.54042900824129 1.75483247955169 1.62736725928359 1.68096378316589 1.83683876902568 1.99403223638344 1.83205228326944 1.90223317040024 1.67871890390572 0.238227383423249 0.242376523804863 0.243478301707097 0.24948980556704 0.248726831426457 0.249552061857158 0.250052638495874 0.243071357146681 0.246695447763649 0.243356470890347 0.239546831973149 0.244786576294705 0.240977440039076 0.245486956500066 0.238227383423249 0.239266030753241 0.257890320896097 0.244765595555115 0.250928965838804 1 1|0 +|/ 30023488 30024084 30023787.9 30023442 30024110 + gene protein_coding_gene FALSE TRUE AT1G79800.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G18590.1); similar to NtEPc-like protein [Nicotiana tabacum] (GB:BAC53926.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.171537764069403 1.56386442599360 0.146446834184668 1 0.498371954599915 3.41423959776395 0.171537764069403 0.121932586163156
AT3G22425_at 5.26744248723418 5.86216987237545 5.50735040216675 5.33605386619856 5.48131591606403 5.01564141787632 5.68112595347257 6.36457015976987 4.87479410608944 4.24362630780243 5.3652555403661 5.65823308586114 5.35769649338675 5.74663703526528 4.63294245669063 6.14946490547138 5.02701000079347 5.10045110364001 4.37479786850554 0.252022946123413 0.23855793455949 0.254768260647461 0.238847230985277 0.244289469410817 0.249157581892175 0.23855793455949 0.244879642960183 0.252602037850618 0.24200105104191 0.248839722915745 0.23855793455949 0.251990921258201 0.244939053481629 0.238739039113743 0.23855793455949 0.265636050200554 0.240824452111146 0.246544638720951 3 3|0 +|/ 7951525 7952609 7952176.778 7951062 7953230 + gene protein_coding_gene FALSE TRUE AT3G22425.1|AT3G22425.2 imidazoleglycerol-phosphate dehydratase 1 (IGPD1) Identical to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1) [Arabidopsis Thaliana] (GB:P34047;GB:Q8VYM1); similar to IGPD (Imidazoleglycerol-phosphate dehydratase) [Arabidopsis thaliana] (TAIR:AT4G14910.2); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazoleglycerol-phosphate dehydratase; (InterPro:IPR000807)|Identical to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1) [Arabidopsis Thaliana] (GB:P34047;GB:Q8VYM1); similar to IGPD (Imidazoleglycerol-phosphate dehydratase), imidazoleglycerol-phosphate dehydratase [Arabidopsis thaliana] (TAIR:AT4G14910.1); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazoleglycerol-phosphate dehydratase; (InterPro:IPR000807) 0.211617591290971 1.56377801358461 0.146467041088979 1 0.498261995216422 10.5031841369698 0.211617591290971 0.178757333062267
AT1G54330_at 0.484381605744219 0.967600655250682 0.538015466916521 0.308556886400991 0.56749888618251 0.927217260648524 0.653742601273299 1.28764219027087 0.904097931759237 0.757614711410531 0.945850635747018 0.556905996616371 0.452817740131743 0.65346216917029 0.72559646714845 0.676650872422243 0.673195156084644 0.774269354084957 0.766791189725295 0.202553393009161 0.201246719712883 0.193889082030790 0.200268343708452 0.200270454551459 0.194896660810353 0.198922931133060 0.211915483902305 0.193889082030790 0.200969350055448 0.200106637391298 0.195716886315792 0.196939471839337 0.199548337612498 0.193889082030790 0.197049471519651 0.203433410602330 0.200589910570508 0.194970418030289 1 1|0 -|/ 20283412 20284027 20283606.1 20283234 20284619 - gene protein_coding_gene FALSE TRUE AT1G54330.1 ANAC020 (Arabidopsis NAC domain containing protein 20); transcription factor similar to ANAC028 (Arabidopsis NAC domain containing protein 28), transcription factor [Arabidopsis thaliana] (TAIR:AT1G65910.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15294.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.195088683401802 -1.56372931855334 0.146478429135272 1 0.498200032627082 1.46275435736465 -0.195088683401802 0.156456910586095
AT4G30900_at 7.2584571096526 7.05256857949448 6.85709253394702 6.41290520864683 7.612255107302 6.59605282592263 6.54852609209436 6.35624378942663 7.0864913076413 6.2678264702496 6.20143833767603 6.10176815407705 5.77042119381549 6.54571247346237 5.84903107523599 5.78239833467444 5.94464608792336 6.09837858643914 6.31119699832966 0.240880736711958 0.233101514770012 0.234323278781649 0.24372888025346 0.232170073157599 0.228975087836407 0.237136779128798 0.233203473448439 0.232825395354277 0.232919453827307 0.225272040421098 0.233089282772922 0.235565740398728 0.234832646762999 0.242160236185455 0.227900059789683 0.259756917621806 0.235358420750823 0.225272040421098 4 4 + 15041780 15042137 15042004.2 15039438 15042317 + gene protein_coding_gene FALSE TRUE AT4G30900.1 similar to hypothetical protein MtrDRAFT_AC152068g2v2 [Medicago truncatula] (GB:ABE88728.1); similar to Os05g0279600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055085.1); contains domain no description (G3D.3.60.10.10); contains domain DNase I-like (SSF56219) -0.226409892686465 -1.56309542199176 0.146626745684479 1 0.497393529000249 13.1327105920541 -0.226409892686465 0.198019611265670
AT3G08630_at 3.02747128220765 3.19798437050001 3.24364003265236 3.09465413723125 3.00587547421035 3.69500312812463 4.06573545916692 4.65034637381687 3.58496982105123 3.55451417094908 4.73731945728439 5.05362758106341 4.40647504685036 4.62076086482399 5.42308036767184 4.08762701827747 4.44426605929204 4.23171872057277 4.11980676403769 0.198569682136887 0.196649321380459 0.196649321380459 0.200062081891979 0.206595292104177 0.205730089610899 0.197887406345725 0.202250508077004 0.207796212398294 0.196649321380459 0.201980190757334 0.200125051843936 0.197761507170588 0.202885140821538 0.201323768428341 0.196649321380459 0.199936596316048 0.200066283978568 0.196649321380459 3 3 + 2621426 2621792 2621604.636 2620838 2622226 + gene protein_coding_gene FALSE TRUE AT3G08630.1 similar to alphavirus core protein family [Arabidopsis thaliana] (TAIR:AT3G08640.1); similar to Os01g0812900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044596.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68215.1); similar to P0432B10.9 [Oryza sativa (japonica cultivar-group)] (GB:BAB90391.1) 0.198460646215989 1.56305369723843 0.146636512870918 1 0.497340449687935 7.68694193631819 0.198460646215989 0.161223278512292
AT3G15780_at 7.32402474259534 7.72141483080919 7.86884211191084 7.92606504247392 7.58582819247282 8.2634917744396 7.8079040033941 8.49171117244511 7.6031700236232 8.24019211615627 6.8849502009693 6.54147887081804 8.08056629252247 7.6502682618627 6.46523820107236 8.27322251573133 8.57651003023214 7.3244053048873 8.08168789975378 0.179259535994258 0.166611494200922 0.170744318761594 0.178637682661528 0.170114790564395 0.173501596448794 0.173113881668504 0.178345247514976 0.183231087464550 0.173008992253858 0.185897900659543 0.172165643019805 0.177455694639337 0.180268597821610 0.17683306631054 0.176815775864176 0.172199895617201 0.167635047894475 0.171452188435872 3 3|0 +|/ 5341625 5342332 5342196.222 5341433 5342564 + gene protein_coding_gene FALSE TRUE AT3G15780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52550.1); similar to Os01g0392100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043115.1) -0.212821813534551 -1.56283253329373 0.146688293770447 1 0.497059114615906 15.5984585536208 -0.212821813534551 0.1805096624893
AT1G80410_at 6.25100537521853 6.85884895942825 6.21707441577728 6.43308844569681 7.0316764748612 6.0627282553415 7.41514226502828 6.97062344106175 5.3175433937419 4.88839814137398 5.37200200783555 6.18552799246948 6.3736426989338 6.16316347277983 6.22394455886779 6.1616475360758 6.33323788634187 5.86601616846898 5.29326289562026 0.216666369555622 0.212937211466162 0.214293179441561 0.213756549487133 0.215865030327520 0.226754339215926 0.230687528236657 0.220995952321833 0.238991737366173 0.215257116370224 0.211399377555298 0.209236136506571 0.209236136506571 0.209236136506571 0.221803511225527 0.209236136506571 0.216652006460414 0.218194090476931 0.21214769021362 1 1 - 30234186 30234983 30234606 30232377 30239873 - gene protein_coding_gene FALSE TRUE AT1G80410.1 EMB2753 (EMBRYO DEFECTIVE 2753); binding similar to PREDICTED: similar to NMDA receptor regulated 1 isoform 5 [Bos taurus] (GB:XP_879817.1); similar to PREDICTED: NMDA receptor regulated 1 isoform 2 [Pan troglodytes] (GB:XP_001138279.1); similar to PREDICTED: similar to NMDA receptor regulated 1 isoform 2 [Bos taurus] (GB:XP_869943.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.240366600522293 1.56270814080987 0.146717424675452 1 0.496900889721012 12.2806730876185 0.240366600522293 0.215631494413168
AT4G26640_at 7.9430902366355 7.90462657268146 7.88945670577216 8.07210713293854 7.86550339824053 7.9644913570717 7.95409811651994 8.09219612321742 8.05614770575786 7.87452406894133 7.86708508627914 7.72255745374844 7.74792216105614 7.62836229731838 7.65823681508521 7.7422405889617 7.46166298804766 7.59656970571372 7.8259749955655 0.182889331040425 0.172663984551103 0.175318952438897 0.174478271507503 0.175620691761735 0.183729055803722 0.1687750578023 0.179817667327609 0.189339382859751 0.172460036828269 0.171905947241583 0.168606981789279 0.167023173546498 0.173431658157443 0.170867661304279 0.169904798004662 0.180812547305862 0.180752030990743 0.172208651669212 4 4|0 -|/ 13437338 13438122 13437607.4 13437077 13440829 - gene protein_coding_gene FALSE TRUE AT4G26640.1|AT4G26640.2 WRKY20 (WRKY DNA-binding protein 20); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20) (WRKY20) [Arabidopsis Thaliana] (GB:Q93WV0;GB:Q8H1E9;GB:Q94AP6;GB:Q9SUA0); similar to WRKY2 (WRKY DNA-binding protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56270.1); similar to putative WRKY-type DNA binding protein [Glycine max] (GB:AAP85545.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20) (WRKY20) [Arabidopsis Thaliana] (GB:Q93WV0;GB:Q8H1E9;GB:Q94AP6;GB:Q9SUA0); similar to WRKY2 (WRKY DNA-binding protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56270.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABE81459.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.133207866743220 -1.56256345285620 0.146751314836894 1 0.496716858900286 15.7591771522752 -0.133207866743220 0.043680556062249
AT1G50580_at 1.86725205649443 1.30496613071256 1.98442039848556 1.72004589310059 1.6205607876779 1.90860094778707 1.34697000623922 1.56283358723985 1.31408615546263 1.70269531820157 1.65594833951987 1.38776922965938 1.85619740558253 1.51803624748877 1.39195648063264 1.20453640160633 1.51205847287404 1.19871205851096 1.20664521878435 0.183017777063237 0.17190208997434 0.174186057072396 0.177612145339641 0.175805872415642 0.182066210704459 0.17190208997434 0.17190208997434 0.183913813018220 0.181953705034772 0.178568872015789 0.182176420210055 0.176520066707044 0.1757389075395 0.181024417506316 0.179936068965878 0.180218304198969 0.187398965058448 0.181779568479000 1 1 + 18735258 18735764 18735465.182 18734499 18735845 + gene protein_coding_gene FALSE TRUE AT1G50580.1 glycosyltransferase family protein similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G29630.1); similar to glucosyltransferase [Ipomoea purpurea] (GB:BAD95882.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.172872246796365 1.56238267163844 0.146793668702561 1 0.496486934908587 3.10118658945073 0.172872246796365 0.124265246276851
AT3G15360_at 12.2364823209757 12.2452258200713 12.2672929482752 12.2110488475752 12.2258703329334 12.2783831998350 12.4076008337281 12.4351990940723 12.3147398440800 12.2568330387282 12.7094019652141 12.5583611233432 12.5098502932320 12.5178784383200 12.5444615193171 12.6156705012804 12.3732730204295 12.5865811639003 12.0639118154789 0.0749230736700732 0.0764435755062686 0.0768308125987114 0.0788253221800813 0.076726253339052 0.0759610870870116 0.0774892027054518 0.080058077383925 0.082351446720786 0.0741719345827398 0.076612960148398 0.0756074507110206 0.0760705133802441 0.0758802228460574 0.0800150526300157 0.0765880936237994 0.0903562662970252 0.0782632662635268 0.0767349945273832 3 3|0 +|/ 5188494 5189354 5188856.4 5188381 5189704 + gene protein_coding_gene FALSE TRUE AT3G15360.1 ATHM4 (Arabidopsis thioredoxin M-type 4); thiol-disulfide exchange intermediate encodes a prokaryotic thioredoxin Identical to Thioredoxin M-type 4, chloroplast precursor (TRX-M4) [Arabidopsis Thaliana] (GB:Q9SEU6;GB:Q9LDP6); similar to ATHM2 (Arabidopsis thioredoxin M-type 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT4G03520.1); similar to putative thioredoxin m2 [Pisum sativum] (GB:CAC69854.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) 0.127314167655026 1.56234203393455 0.146803190871966 1 0.496435252632295 24.6702694176293 0.127314167655026 0.0142274856177065
AT3G47610_at 7.18926278660488 7.37087911711549 6.72507522629196 6.91908539194371 7.64405796515813 7.28108325729093 6.99715391065941 6.5295144049771 6.77408451281893 6.9654958287313 6.21208884851235 6.5544924404493 6.33853427734842 6.57608401658629 5.92101948090438 6.7951373910353 6.73510134356747 6.32883645329293 6.91231474712394 0.231986373390602 0.228945276528913 0.232026712270818 0.234504997938144 0.239901739904747 0.237214499463918 0.239482533239618 0.237907277975424 0.235773791113676 0.228637763416351 0.231459628144335 0.227750533715072 0.230132411645676 0.237216757698258 0.240345778950452 0.227750533715072 0.239835055161195 0.227750533715072 0.231953100685882 3 3|0 +|/ 17561241 17562163 17561847.444 17560106 17562405 + gene protein_coding_gene FALSE TRUE AT3G47610.1 transcription regulator/ zinc ion binding similar to PREDICTED: similar to thyroid hormone receptor interactor 4 isoform 2 [Macaca mulatta] (GB:XP_001107771.1); similar to PREDICTED: similar to thyroid hormone receptor interactor 4 isoform 3 [Macaca mulatta] (GB:XP_001107836.1); similar to PREDICTED: similar to thyroid hormone receptor interactor 4 isoform 1 [Macaca mulatta] (GB:XP_001107714.1); contains InterPro domain Zinc finger, C2HC5-type; (InterPro:IPR009349) -0.165340171382020 -1.56220507222945 0.146835287516402 1 0.496261073237999 13.7403274130153 -0.165340171382020 0.112293914127981
AT4G36680_at 4.07645452985442 4.22890557069071 4.12611481219321 4.36886099664237 3.68136899688907 3.56820761110938 3.8009609345042 3.71610179857472 3.29854623018391 3.28960990981226 3.45686904646951 4.00166795342568 3.24155960837796 3.6528231771485 3.68663829486092 3.52796498384041 3.31090752533498 3.25998471774626 3.08395544050147 0.188319563894921 0.186671041695562 0.192539057012373 0.192438509956965 0.187031043317842 0.187695035114819 0.187745712420592 0.186940593458681 0.195688573348134 0.187474865849677 0.186671041695562 0.188645646538353 0.186671041695562 0.190949345818697 0.192048906912982 0.189523810959237 0.187356347690954 0.190361515141683 0.193180062885252 4 4 - 17292490 17293026 17292711.727 17292233 17293826 - gene protein_coding_gene FALSE TRUE AT4G36680.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G18520.1); similar to BAC19.8 [Lycopersicon esculentum] (GB:AAG01123.1); similar to Os08g0499800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062150.1); similar to Os02g0633200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047508.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.136898557851902 1.56102282035559 0.147112600117638 1 0.494757940746352 7.31654145975713 0.136898557851902 0.0553162410255189
AT3G52600_at 1.19414763121109 1.38540361757868 1.72226466850159 1.01334596823785 1.08741022426736 0.963006180916349 0.751193860116312 1.30291512050687 1.58552683583426 1.34520686540259 1.44820476284065 0.840675858299756 1.08977533438397 1.14632407148292 1.00188675802623 0.904382873655882 0.959553169095995 0.830059053818178 1.45182767573489 0.199726752771949 0.203653841191493 0.193770273517641 0.204152307132987 0.194501701072715 0.196897459499451 0.193332634826205 0.197296591763849 0.201572428716009 0.216291466844606 0.194816780789283 0.197717320479487 0.195762638252981 0.202587939737041 0.207207993271509 0.203463460280674 0.206094617982296 0.209550869319125 0.198818297491862 3 3 - 19518109 19518808 19518504 19517869 19520368 - gene protein_coding_gene FALSE TRUE AT3G52600.1|AT3G52600.2 ATCWINV2 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 2); hydrolase, hydrolyzing O-glycosyl compounds similar to ATCWINV4 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 4), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT2G36190.1); similar to Beta-fructofuranosidase, insoluble isoenzyme 1 precursor (Sucrose hydrolase 1) (Invertase 1) (Cell wall beta-fructosidase 1) (GB:P26792); similar to beta-fructofuranosidase [Daucus carota] (GB:CAA49162.1); similar to invertase (GB:AAA63802.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) -0.197577176997958 -1.56085732079805 0.147151456646494 1 0.494547576829661 2.42169167267919 -0.197577176997958 0.160392575415175
AT2G46590_at 1.27596577762481 1.41653775885842 1.25470946544645 1.11599042950239 1.28812960377297 1.13636410782201 1.16440801735740 1.05836206118657 1.27147061533822 1.04822533977328 1.60167778665180 1.73099604029796 1.47861599119871 1.51819686333294 1.70247986805566 1.44267836128755 1.40276512005085 1.33360540018648 1.36544171560858 0.211727646728810 0.211707610156565 0.215205111405551 0.211158460978951 0.213871284765456 0.211621271326268 0.215747102643851 0.214244690742073 0.216836577614613 0.212957541574885 0.212450514729698 0.210870175361813 0.216883852582733 0.213331968446809 0.215359953774823 0.210870175361813 0.216147802806247 0.228931490940200 0.210870175361813 2 2 + 19141402 19141758 19141596.364 19140112 19142360 + gene protein_coding_gene FALSE TRUE AT2G46590.1|AT2G46590.2 DAG2 (DOF AFFECTING GERMINATION 2); DNA binding / transcription factor|DAG2 (DOF AFFECTING GERMINATION 2); DNA binding encodes a protein containing Dof zinc finger motifs. expression is limited to vascular system of the mother plant. recessive mutation is inherited as maternal-effect and expression is not detected in the embryo. mutants are defective in seed germination. mutants are more dependent on light and cold treatment and less sensitive to gibberellin during seed germination. Identical to Dof zinc finger protein DOF2.5 (AtDOF2.5) (Dof affecting germination 2) (DOF2.5) [Arabidopsis Thaliana] (GB:Q9ZPY0;GB:Q84WI6;GB:Q9AR20); similar to DAG1 (DOF AFFECTING GERMINATION 1) [Arabidopsis thaliana] (TAIR:AT3G61850.3); similar to Dof18 [Glycine max] (GB:ABI16019.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)|Identical to Dof zinc finger protein DOF2.5 (AtDOF2.5) (Dof affecting germination 2) (DOF2.5) [Arabidopsis Thaliana] (GB:Q9ZPY0;GB:Q84WI6;GB:Q9AR20); similar to DAG1 (DOF AFFECTING GERMINATION 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61850.1); similar to Dof18 [Glycine max] (GB:ABI16019.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.133988851594272 1.56045237405014 0.147246569140937 1 0.494032911953329 2.59118647892443 0.133988851594272 0.046847007735291
AT1G11930_at 9.5757713234199 9.4427172644579 9.50164428523196 9.53780529972607 9.67273558859554 9.38232039976063 9.16638056879573 9.14798930511836 9.07717679680987 9.0699184202343 9.05840577461326 9.13404775748334 9.01765892855675 9.2972362584415 8.96031239336589 9.41767207778903 9.09573406459294 9.22271895008774 9.0536099486015 0.102448749151812 0.099044876705271 0.104996647481846 0.104000810887457 0.101794659190104 0.0989815603742024 0.0998236825810962 0.100310680715752 0.104265854244802 0.102235003638351 0.102644861823661 0.105107030496918 0.106173545145527 0.103540221217065 0.108250476931916 0.102169286098332 0.106869641801472 0.102174749832017 0.103263575637717 1 1|0 +|/ 4028955 4030253 4029583.857 4028690 4030582 + gene protein_coding_gene FALSE TRUE AT1G11930.1|AT1G11930.2 alanine racemase family protein similar to alanine racemase family protein [Arabidopsis thaliana] (TAIR:AT4G26860.1); similar to Os05g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054662.1); similar to putative proline synthetase associated protein [Oryza sativa] (GB:CAD29783.1); contains InterPro domain Alanine racemase, N-terminal; (InterPro:IPR001608); contains InterPro domain Protein of unknown function UPF0001; (InterPro:IPR011078) 0.136991665807495 1.56039165946559 0.147260834196549 1 0.493955754015069 18.5371080031374 0.136991665807495 0.0557252737044526
AT1G32120_at 3.61801564122298 4.26869993190772 3.81339252739371 3.93021632050894 3.76649700247455 3.8513340932522 3.03507719526847 3.24530846043087 3.30078773863148 2.6398054181381 2.76987728744122 2.93562404880862 3.18348157626868 2.97978152368953 2.76038803789900 2.65621328276191 2.63735557015373 3.54153076638309 2.73112611735615 0.256076155701723 0.243086743382816 0.239983120395143 0.249307627654435 0.238836448351695 0.254431639907722 0.240510907729302 0.243186313916243 0.243958503067964 0.238836448351695 0.239762379313938 0.241893892750528 0.238836448351695 0.245453570743105 0.241996617481645 0.244508754135629 0.255559706240372 0.241034109166658 0.240034586568871 1 1 + 11557433 11558518 11558166.545 11552906 11558757 + gene protein_coding_gene FALSE TRUE AT1G32120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51538.1); similar to Plant viral-response family protein [Solanum bulbocastanum] (GB:AAP45159.1); contains InterPro domain Protein of unknown function DUF716; (InterPro:IPR006904); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) 0.170521549500162 1.56033184740585 0.147274888380644 1 0.493879744801135 6.60286994808292 0.170521549500162 0.120944332908381
AT3G61110_at 10.7126544812358 10.7180338053982 10.2935867169792 10.3520128531591 10.2577639154792 10.373497139357 10.4032829597684 10.7087794555261 10.2183229327042 10.4769621273363 10.5566764530635 10.6974533431668 10.3182561395084 10.3924741668396 10.8346984372530 10.3190163970377 10.3087179875930 9.96424605233095 10.4525462201032 0.0903628653162898 0.0884143555324299 0.0911207986654625 0.0910049200809915 0.0905389476752852 0.0920364551078052 0.0929072711943133 0.093029891348823 0.102115357480112 0.0864193836584516 0.0950473657251163 0.0920937734260331 0.0936078894529446 0.100770390095395 0.0886073930637692 0.0908452245269797 0.100823031646410 0.0962024578768252 0.0889473486098392 3 0|3 /|+ 22623364 22623557 22623504 22622609 22623786 + gene protein_coding_gene FALSE TRUE AT3G61110.1 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome Arabidopsis ribosomal protein Identical to 40S ribosomal protein S27-2 (RPS27B) [Arabidopsis Thaliana] (GB:Q9M2F1;GB:Q9ZNS3); similar to 40S ribosomal protein S27 (RPS27A) [Arabidopsis thaliana] (TAIR:AT2G45710.1); similar to ribosomal protein S27-like protein [Solanum tuberosum] (GB:ABA40465.1); contains InterPro domain Ribosomal protein S27E; (InterPro:IPR000592) -0.137570286926973 -1.55978657318927 0.147403066757685 1 0.493186890837599 20.8807278152697 -0.137570286926973 0.0574387273918402
AT4G15890_at 2.89966426200745 3.4251009869237 3.83085393036175 3.73234126001681 2.94625989355758 3.48739589988304 3.2852917778783 3.45533265817958 3.64525464621209 3.42202210598826 3.91589274359774 3.83199527449748 3.29771123624887 3.6520928046897 3.72429123296349 3.00319625570476 3.51911313414701 3.69077652590909 3.2921125994436 0.209791200466017 0.205299226266432 0.207652482702283 0.211741963101704 0.204330138839880 0.209686573489309 0.213658356029347 0.222905441365764 0.202294086286426 0.206702351661472 0.207876477487372 0.204947565556154 0.207861465638397 0.206024078344318 0.20995852941587 0.205932693990307 0.216394549870989 0.202294086286426 0.204778878506724 4 4 + 9022197 9022680 9022503.455 9017468 9022997 + gene protein_coding_gene FALSE TRUE AT4G15890.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT3G57060.1); similar to PREDICTED: similar to LOC398742 protein [Gallus gallus] (GB:XP_417877.2); similar to Os12g0548100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066969.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Chromosome condensation protein, HCP-6-related; (InterPro:IPR012371); contains InterPro domain HEAT; (InterPro:IPR000357) 0.179559595897992 1.55965080132552 0.147434997971915 1 0.49301439469283 6.89903680102657 0.179559595897992 0.134886155980587
AT3G07760_at 7.88736344119493 7.8676882310644 7.67343322582536 7.5809239740317 6.81430803998437 7.36076577670942 5.91345825553214 6.93958583208205 6.78275227620439 6.4505788265293 5.72329751243393 6.0681886794247 5.61789744153336 6.03775124257271 5.78806875650101 6.52859661751883 5.57885255856938 5.4521203888109 6.30419413796779 0.205608729935716 0.206876044608406 0.204296645683575 0.200244505372478 0.199851165633088 0.205314958961024 0.20822353896757 0.212995479353445 0.210903162676486 0.203856071450712 0.204846619354921 0.201896074870042 0.199851165633088 0.202128772208073 0.204524709624446 0.199880257379994 0.215079117284300 0.217702416169459 0.204622650688925 3 3 + 2476759 2477919 2477665.364 2476373 2478260 + gene protein_coding_gene FALSE TRUE AT3G07760.1|AT3G07760.2 similar to Os12g0514600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066883.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993); contains InterPro domain Sterile alpha motif homology 2; (InterPro:IPR011510) -0.228913974863609 -1.55958548741826 0.147450360832662 1 0.492931417563652 13.4356183786719 -0.228913974863609 0.201851699989587
AT2G40070_at 6.35823583161547 6.75827504494822 5.65650171277992 6.1207497457257 6.82359779086996 6.45174635067999 6.55126876525062 6.85705603746594 6.85979560383101 5.79447036140503 6.35724645107884 6.02539519630843 6.51318942538732 6.93243687687186 6.2989200959173 6.23260456784366 5.94807956161153 6.43252433942736 6.34625297116346 0.235206950481448 0.225155008367966 0.239506607486388 0.225594677612341 0.229769153214393 0.240845179848625 0.223086434621034 0.227465804140452 0.228012019948935 0.223086434621034 0.223232138509559 0.227053007231313 0.228459615549068 0.225141141371797 0.223086434621034 0.224922381149719 0.228460421723774 0.226082695963799 0.234862383492477 2 2 - 16735822 16736294 16736079.2 16735272 16738684 - gene protein_coding_gene FALSE TRUE AT2G40070.1|AT2G40070.2 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G09000.1); similar to Os01g0141900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041987.1); similar to putative proteophosphoglycan [Oryza sativa (japonica cultivar-group)] (GB:BAD61066.1) -0.179508383816775 -1.55933136443652 0.147510147853450 1 0.492608590547167 12.7852068481365 -0.179508383816775 0.134864660301837
AT4G04700_at 3.02897983074267 3.4311023904251 2.59523719676687 2.75383459780353 1.70062058515694 2.12369353332756 2.15617119360092 2.53724703386759 2.48071773402411 1.90890288723253 2.16908756693366 3.01072859311992 2.43086871167056 2.15336039531027 1.95253443848547 2.28917356145496 2.64123982282897 2.15908782374122 2.20974620842063 0.286025290051991 0.266366849998515 0.266366849998515 0.268423273751939 0.266366849998515 0.272274198071743 0.266366849998515 0.266366849998515 0.274569020293035 0.267131197479811 0.268940829858631 0.266366849998515 0.278401624408914 0.269284317871730 0.266366849998515 0.275322090163795 0.269155440922097 0.271256856437331 0.269353248064448 4 4|0 -|/ 2386572 2387509 2387147.6 2385274 2387984 - gene protein_coding_gene FALSE TRUE AT4G04700.1 CPK27 (calcium-dependent protein kinase 27); kinase member of Calcium Dependent Protein Kinase similar to CPK31 (calcium-dependent protein kinase 31), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04695.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to calcium-dependent protein kinase [Solanum lycopersicum] (GB:CAC87494.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.172028731463988 -1.55795552217410 0.147834206915965 1 0.490861329983157 4.81613532392084 -0.172028731463988 0.123714745056981
AT4G23980_at 7.15507332237934 6.89072759671878 7.34762728392771 6.88836463477864 6.8179021189776 6.74171122289081 6.76318187819717 6.44998006956478 5.96062377747957 6.52761729224708 6.50686970780927 6.66400506587997 6.6000444991161 6.25273344774721 6.4037766880431 6.82957415933448 6.65823541117881 6.49740241867303 6.59789660719906 0.197662323788842 0.194311955295108 0.198172996661623 0.191303409231968 0.198823676961013 0.203541711640879 0.202779313317987 0.205253756328111 0.208690398698275 0.194545583506282 0.192401749541771 0.193670023428314 0.191317831066732 0.201792770221146 0.200933248168720 0.198887135548358 0.202649975015427 0.204459612691566 0.197915398329574 4 4|0 +|/ 12453988 12454669 12454240.6 12451208 12455277 + gene protein_coding_gene FALSE TRUE AT4G23980.1|AT4G23980.2 ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor|ARF9 (AUXIN RESPONSE FACTOR 9) Encodes auxin response factor 9 (ARF9). Identical to Auxin response factor 9 (ARF9) [Arabidopsis Thaliana] (GB:Q9XED8;GB:O22991); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.3); similar to Putative auxin response factor 20 (GB:Q9C7I9); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.161847440421423 1.55728265639821 0.147992916346812 1 0.490007158221665 13.338634049445 0.161847440421423 0.107335928515251
AT3G43540_at 8.31974746602136 8.30927069671889 8.21159220427924 8.19535555090961 8.85659517561484 7.90880100497352 8.85606344052287 8.79688788301818 8.60823052844904 9.04098032463381 9.0097730791702 9.00729768057345 8.80969385550906 8.69587918310871 8.86049771826622 9.25376800057878 8.11819970891397 8.65893556226003 9.12355665006528 0.160311840149614 0.155612387882649 0.161339586879335 0.161365248143001 0.160363877829262 0.171596711416105 0.165563944616199 0.156934012563028 0.170058984108795 0.159815789059322 0.155639484602523 0.155612387882649 0.155612387882649 0.172062671473133 0.157052498532372 0.155632917360595 0.174223146821896 0.173184453121376 0.160382386078858 3 0|3 /|+ 15443086 15443970 15443634.778 15441677 15444175 + gene protein_coding_gene FALSE TRUE AT3G43540.1|AT3G43540.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47860.1); similar to Os09g0436900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063263.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36432.1); contains InterPro domain Protein of unknown function DUF1350; (InterPro:IPR010765) -0.199953311730589 -1.55670971536255 0.148128173544672 1 0.489280011870985 17.2947948942224 -0.199953311730589 0.164373595315024
AT4G18090_at 1.24745043822560 1.12211208879554 1.35179037713177 1.09545733922557 1.16858639109338 1.17879101822812 1.22851823911568 1.43553967293834 1.57404451621252 1.84840989725115 1.1858637403372 1.10507828018408 1.04253291316382 1.06049473776918 1.30688010137372 1.05654626562408 1.47210109236419 1.80564667103482 0.99214025799898 0.215254269735692 0.205049619747053 0.219480037996903 0.207498324074618 0.208875269080716 0.211376521773525 0.205049619747053 0.212813270901493 0.206798758391516 0.216205425374029 0.205049619747053 0.212064187578508 0.207406979231127 0.209189069915075 0.210794427980819 0.208784440160766 0.215664374420802 0.207975285207442 0.210146588396340 4 4 - 10034047 10034581 10034358 10034023 10034859 - gene protein_coding_gene FALSE TRUE AT4G18090.1 unknown protein -0.138443705135955 -1.55413605586641 0.148737081116454 1 0.486015654664161 2.59149296178705 -0.138443705135955 0.0610317299504456
AT4G03280_at 13.6050223652793 13.6758090305735 13.4915396941608 13.5110484005707 13.4618253541111 13.5128672845586 13.8805205157983 14.1139063606122 14.3050014786511 14.2370687053811 14.4121896129787 14.3561172196584 14.1971633930717 14.1618726424599 14.3540932820587 14.3319293370579 13.9519417077151 14.4762278316331 14.1191911622247 0.0557010715878764 0.054420372459976 0.0545228342041392 0.0559334597525067 0.0552277584185361 0.0584810226519726 0.0604569551720911 0.0548720426804729 0.0604938705527845 0.054972248598148 0.0558935479933603 0.0538381703113911 0.0587804294211587 0.0628173066785731 0.0578574495057374 0.0538381703113911 0.0622114793858406 0.0578300601432002 0.0546629192901148 4 4 + 1440550 1441682 1441287.727 1440146 1441863 + gene protein_coding_gene FALSE TRUE AT4G03280.1|AT4G03280.2 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen. Identical to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) (Proton gradient regulation protein 1) (petC) [Arabidopsis Thaliana] (GB:Q9ZR03;GB:Q94EI4;GB:Q9FYB6); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13430.1); similar to Cytochrome b6-f complex iron-sulfur subunit 2, chloroplast precursor (Rieske iron-sulfur protein 2) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 2) (ISP 2) (RISP 2) (GB:Q02585); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Rieske iron-sulfur protein; (InterPro:IPR005805)|Identical to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) (Proton gradient regulation protein 1) (petC) [Arabidopsis Thaliana] (GB:Q9ZR03;GB:Q94EI4;GB:Q9FYB6); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13440.1); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13430.1); similar to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) (GB:P08980); similar to Rieske FeS-precursor [Spinacia oleracea] (GB:CAA29590.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Rieske iron-sulfur protein; (InterPro:IPR005805) -0.132361477569318 -1.55410096686844 0.148745397949287 1 0.485971171338659 27.9068735392488 -0.132361477569318 0.0432517487475939
AT1G67460_at 2.49000362632138 2.50457327467213 2.93418140151314 2.26925350908510 2.64338618969449 3.0019734274717 3.21991811710806 2.87063759375688 3.52752823029242 3.49408219378713 3.38752470925964 2.93872955014918 2.92648053129393 2.73538653222409 2.53234625691552 3.09200221042969 3.41719456108519 3.18427427890217 2.99230084311411 0.200409261512557 0.200737919517207 0.201583470942932 0.207240568124734 0.200409261512557 0.204592750794162 0.219007571974646 0.203263918680194 0.208884116934952 0.207609995718504 0.200409261512557 0.205351221308557 0.208443441290584 0.206136273701203 0.215359262294911 0.200409261512557 0.200722569009607 0.220368242724514 0.209412383398448 1 1|0 -|/ 25273369 25273867 25273668.375 25273289 25275280 - gene protein_coding_gene FALSE TRUE AT1G67460.1 GTP binding / GTPase similar to EMB1688 (EMBRYO DEFECTIVE 1688), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G67440.1); similar to OSIGBa0092E09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66376.1); similar to ribosome small subunit-dependent GTPase A [Trichodesmium erythraeum IMS101] (GB:YP_721486.1); similar to Os04g0381600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052604.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain GTPase EngC; (InterPro:IPR004881); contains InterPro domain EngC GTPase; (InterPro:IPR010914) -0.185156307319483 -1.55409436467417 0.148746962853925 1 0.485962801616219 5.92409726804301 -0.185156307319483 0.144054164441756
AT2G17670_at 5.43284173657529 5.49269822074486 5.55014125246614 5.84150979030924 5.43829798659901 5.21761342619068 6.05424492597232 5.92221770847819 4.83627817820772 4.79379043450735 4.38709251768044 4.59982348848922 5.26278363194816 4.60566754315833 4.93400153069958 4.91087401101051 4.45582096209198 5.25392496676648 4.98055660413988 0.211753036582806 0.214064338187294 0.212088500946721 0.214481868980203 0.216182296594313 0.213454305074022 0.223045792111578 0.218483234310441 0.224797032578187 0.210814289095868 0.223914676679758 0.217288567633525 0.211756409355561 0.222603050645799 0.216362933952451 0.213296000837815 0.216584831345803 0.214306284037261 0.210814289095868 2 2 + 7682342 7682828 7682599.273 7681433 7683239 + gene protein_coding_gene FALSE TRUE AT2G17670.1|AT2G17670.2 pentatricopeptide (PPR) repeat-containing protein similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE86977.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE86977.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.141284929094561 -1.55378015947152 0.148821454863122 1 0.485564502812235 10.4544241244664 -0.141284929094561 0.0680462039795481
AT2G21950_at 7.23183315662485 7.63998044332965 7.7173654328252 7.5124708030709 8.24541250693313 7.87047987784771 7.43426388383517 7.47611787913558 7.57905731165802 7.30138554284286 7.68637916467305 7.15144469198857 7.9715349651324 7.6736416268329 7.05740062493304 7.71595071164086 7.17612026818054 7.19414251487978 7.70061121571525 0.165841794099296 0.162500329103202 0.161911360396368 0.166547418611609 0.167610465492804 0.171785333433040 0.165986174459461 0.174637240402875 0.170908656665633 0.166577499672863 0.177252071630343 0.166751128310892 0.165840609260040 0.161432808604529 0.164867548157631 0.165626273106295 0.169821971844018 0.169829234634199 0.181973535893731 2 2 - 9360606 9361144 9360832.727 9360254 9361725 - gene protein_coding_gene FALSE TRUE AT2G21950.1 SKIP6 (SKP1 INTERACTING PARTNER 6); ubiquitin-protein ligase Encodes an SKP1 interacting partner (SKIP6). similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.158596056032595 1.55299028399894 0.149008862736443 1 0.484563441083568 15.1311629201693 0.158596056032595 0.102510935361219
AT1G80790_at 8.52899504439678 8.39785229389823 8.70641702266496 8.57924876172617 8.938002424389 8.60246766366824 8.91683870824042 8.6363994843293 8.57565854374483 8.81079278705781 8.31937022177784 8.46978205608369 8.23069348884509 8.33186285242567 8.18863280068427 8.59567701749855 8.40300507725746 8.45384816117299 8.8810809679282 0.135855181464804 0.122389716148531 0.121495004129895 0.117883785928389 0.116844951597216 0.123479536226152 0.121703867860105 0.119081560147860 0.132756619698862 0.127017910256200 0.120356605019764 0.117064184376749 0.133038853489249 0.121227531618112 0.122556514331145 0.116844951597216 0.119475874314625 0.123256369919582 0.125828312795081 1 1 + 30366858 30367724 30367446.091 30364615 30368199 + gene protein_coding_gene FALSE TRUE AT1G80790.1 XH/XS domain-containing protein / XS zinc finger domain-containing protein similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00380.1); similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G15910.1); similar to Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger; Prefoldin [Medicago truncatula] (GB:ABE87525.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379); contains InterPro domain Region of unknown function XS; (InterPro:IPR005380); contains InterPro domain Region of unknown function, putative Zinc finger, XS and XH; (InterPro:IPR005381); contains InterPro domain DnaB-like helicase, C-terminal; (InterPro:IPR007694) -0.147611277356418 -1.55262120945208 0.149096500769979 1 0.484095794015638 17.2282542049367 -0.147611277356418 0.0820140215705141
AT1G48350_at 11.0386174758119 10.8889393398687 10.2781298755542 10.2050109488181 10.6809076348225 10.5889773560529 10.7023548348203 10.8099220999582 11.0051171623568 11.1136710932847 11.3037416061435 11.6000920338380 10.9365404369188 10.9814145834377 11.9655173962653 11.1466133462073 10.5715127225748 11.1214461540697 11.0106665862282 0.0659219969904392 0.0655731787702929 0.0655731787702929 0.0658194132749326 0.0669626334877314 0.0725794717964817 0.0674785131124552 0.0669371115320418 0.0757494705879692 0.0675015476472633 0.0655731787702929 0.0655731787702929 0.0663632944202832 0.0696570443065178 0.0681951234722473 0.0655731787702929 0.075492268504002 0.0699380709023385 0.0695055910833828 1 1|0 +|/ 17870948 17871851 17871244.5 17870873 17872010 + gene protein_coding_gene FALSE TRUE AT1G48350.1 ribosomal protein L18 family protein Identical to 50S ribosomal protein L18, chloroplast precursor (CL18) (RPL18) [Arabidopsis Thaliana] (GB:Q9SX68); similar to ribosomal protein L18 family protein [Arabidopsis thaliana] (TAIR:AT1G14205.1); similar to Os03g0828100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051775.1); similar to 50S ribosomal protein L18, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99674.1); contains InterPro domain Ribosomal protein L18; (InterPro:IPR004389); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484) -0.130746906413783 -1.55255295008625 0.149112714113209 1 0.484009311298196 21.7723631451575 -0.130746906413783 0.0378241499570156
AT4G30050_at 0.731345300695245 0.649707665273064 0.726684747290147 1.20764761723916 1.01877326539628 0.582459300697284 0.958003413391089 1.29504199654697 1.35726202740495 1.78347997861921 1.35975782641835 0.973653123570586 0.99025976334045 1.11105111589641 0.95576451787102 1.20347529187894 0.96848895573557 1.61394224015025 1.26918730416744 0.167770775961142 0.173029061311972 0.172281713430679 0.167770775961142 0.171519362397744 0.178766079467468 0.170107359458731 0.170351851018112 0.180431086206118 0.172751805719044 0.175526219455440 0.167770775961142 0.167770775961142 0.175280038382342 0.174711432680261 0.175802113377415 0.169996959328109 0.172921900285098 0.17205054553597 4 4 - 14687249 14687599 14687404.3 14687035 14687782 - gene protein_coding_gene FALSE TRUE AT4G30050.1 unknown protein -0.173780346846858 -1.5523193135313 0.149168220390350 1 0.483713317716266 2.20472068386027 -0.173780346846858 0.127398662580783
AT2G47580_at 7.88593024899424 7.65804852582639 7.53835289786095 7.98051658287036 8.03556893280001 7.55668435138794 8.41423148138989 7.78646679358007 7.48806466458404 7.33149336086327 6.85921772006889 7.19576000325535 7.22506330046145 7.42060691607255 7.78287692403107 7.73655494156454 7.23119985868611 7.20225942726168 7.88398353160727 0.17811932633449 0.180170454208864 0.188892281468701 0.184143272652364 0.181601073180098 0.184302225605149 0.184579548125515 0.181955027955679 0.192038240790645 0.184737889268542 0.182594984027823 0.186451623452613 0.181025440086533 0.181658927908459 0.182725595723324 0.181584063982575 0.189336189700378 0.190203558726012 0.179229787238367 2 2|0 +|/ 19524630 19525727 19525376.6 19524257 19525941 + gene protein_coding_gene FALSE TRUE AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding encodes spliceosomal protein U1A similar to U2B'' (U2 small nuclear ribonucleoprotein B), RNA binding [Arabidopsis thaliana] (TAIR:AT2G30260.1); similar to U1snRNP-specific protein, U1A [Solanum tuberosum] (GB:CAA90282.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.197271685238743 -1.5521431455299 0.149210085460142 1 0.483490148750974 15.3067447628938 -0.197271685238743 0.161494195919374
AT2G17750_at 1.68457170796271 1.29814590178676 1.76618864544512 1.59754149912900 1.23841573868887 1.26166852076122 1.21876607931123 1.37942822121807 1.81548250713456 1.22412592580777 1.82217389708841 1.94318172870405 1.47364825388531 1.86186744050781 1.58723772662701 1.64852540450052 1.85242886837963 1.45234773949826 1.41395839708311 0.190509246908426 0.19360915201613 0.190509246908426 0.190509246908426 0.198048819492699 0.190720319715119 0.195543647079105 0.193949707450884 0.210610803826305 0.198896863623306 0.190509246908426 0.205337594141735 0.196203551976927 0.19717365694747 0.193937888089452 0.193974903143585 0.195470255179809 0.191773842722834 0.195334626451118 2 2|0 -|/ 7716331 7717051 7716732.556 7716320 7718233 - gene protein_coding_gene FALSE TRUE AT2G17750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19360.1); similar to Os03g0807100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051640.1); similar to Os07g0205500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059148.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) 0.145689864580043 1.55188910378042 0.149270474692938 1 0.483168356634994 3.02544011882488 0.145689864580043 0.078185434335029
AT1G34010_at 4.16792723731847 4.81657912946683 4.5841397162766 4.48095842745655 5.40289464176926 4.87435479891879 5.78631105021108 5.86671643774579 5.72150173890366 5.47767194337121 5.78852592330678 5.80561724580473 5.64258155957087 5.69121800500064 5.40604989151687 5.3615860363286 5.00142111293898 5.78598454007403 5.62973070369184 0.213161088448092 0.208052557780732 0.222711043759613 0.22023848175106 0.209383590331750 0.218201164214057 0.204635958188257 0.208883989240785 0.211738858438021 0.207888193325472 0.206338245210803 0.208320691471727 0.210759975946495 0.206547889371387 0.215817051286995 0.21203268758959 0.231349376028513 0.213817172813730 0.210501722237867 1 1 - 12360355 12360766 12360579.3 12359516 12361169 - gene protein_coding_gene FALSE TRUE AT1G34010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22790.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81200.1) -0.186529161792394 -1.55107395174656 0.149464391366326 1 0.4821360273702 10.5824890972154 -0.186529161792394 0.146557485209293
AT1G44575_at 12.3408089628185 12.4234117403422 12.3497401600005 12.3218464069632 12.4368911136304 12.1331582144314 13.2464889878786 13.2836223757857 13.4651052981269 13.3713726015959 13.6957663919198 13.7519577212922 13.5131825178702 13.5819610123344 13.5841812368661 13.6530329577425 13.1894876671713 13.6019390768098 13.1538736145117 0.0765473567984553 0.0744693618418548 0.0806232938720684 0.0772152790981384 0.0737311817080972 0.079624968280418 0.08235924867367 0.0733493994880068 0.0828660364554386 0.0745636275270058 0.0732709715527264 0.0755752185653524 0.0757562107622146 0.0790851746048991 0.0737153992324383 0.0748405587506216 0.077788526566504 0.0774299230169765 0.0732709715527264 1 1|0 +|/ 16874510 16875572 16874913.2 16874136 16875823 + gene protein_coding_gene FALSE TRUE AT1G44575.1|AT1G44575.2 NPQ4 (NONPHOTOCHEMICAL QUENCHING) Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation. Identical to Photosystem II 22 kDa protein, chloroplast precursor (CP22) (PSBS) [Arabidopsis Thaliana] (GB:Q9XF91;GB:Q9ST34); similar to Photosystem II 22 kDa protein, chloroplast precursor (CP22) (GB:Q02060); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|Identical to Photosystem II 22 kDa protein, chloroplast precursor (CP22) (PSBS) [Arabidopsis Thaliana] (GB:Q9XF91;GB:Q9ST34); similar to chloroplast photosystem II 22 kDa component [Nicotiana benthamiana] (GB:ABC59515.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.135926320805299 -1.55098017263157 0.14948671456463 1 0.482017284205482 26.0177738673124 -0.135926320805299 0.0550612630622489
AT4G35690_at 1.49963940399494 1.75239465120445 1.60842842805743 1.98051313812016 1.63380526184783 1.91466447787284 2.14545267625465 1.83832308554337 1.70224739376879 1.91157900069040 1.72403702391274 1.55459586498094 1.75690885624345 1.37135731172121 1.71658913569101 1.95382679641668 1.68228805067439 1.57562818682236 2.27532208166166 0.169869948382773 0.176974277532741 0.170027149147697 0.18228612987224 0.168915582046755 0.175208144073563 0.169749608090516 0.170888575761111 0.177803435718991 0.169962719689969 0.171650816283532 0.172879236038623 0.175323367441301 0.170599042033003 0.170829000237287 0.172255135240363 0.177147696000868 0.178472052170171 0.183408614665957 4 4 + 16922211 16922604 16922414.091 16921808 16922968 + gene protein_coding_gene FALSE TRUE AT4G35690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35710.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) -0.160372608253610 -1.55034494072508 0.149638001748919 1 0.481213067873605 3.61162933803602 -0.160372608253610 0.106050565382197
AT1G16500_at 5.77281525483495 5.67474762987571 5.65651325672463 6.13131304544252 4.99993100498163 4.95783403933904 3.71457640679491 4.25132839721905 5.57403888419425 4.56877027483618 4.74454988348616 4.86960829611117 4.20937674084524 4.41191023669741 4.91326096935879 4.64783027794728 3.94768890465250 5.17474818145357 4.41775994193733 0.274518559006971 0.283968489003962 0.276849254420551 0.282134789277933 0.277059601899736 0.2912437361511 0.274602731861391 0.272976959468021 0.287404606556569 0.277456738718000 0.276482804615396 0.271013264791951 0.283973559723332 0.288060894555018 0.271708601662874 0.271013264791951 0.283586905784539 0.275710548925806 0.273177105032573 1 1 + 5639255 5639915 5639660.727 5639025 5640166 + gene protein_coding_gene FALSE TRUE AT1G16500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79160.1); similar to H0313F03.6 [Oryza sativa (indica cultivar-group)] (GB:CAH68335.1); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) 0.172189783551946 1.5497456233526 0.149780857723131 1 0.480454503304490 9.87907973938902 0.172189783551946 0.125381292941742
AT2G39960_at 9.58476881422608 9.66493390062654 9.71601588156434 9.81780725480156 9.70694282537296 9.33200646667114 9.45894507702921 9.52096575141114 8.82876376838697 9.15887656898309 9.28215541189213 9.36086702583749 8.87788319868957 9.16683475259955 9.48187099008033 9.22339727699697 9.07612154778595 9.17479434918453 9.03698498426286 0.152381035726763 0.14357147475193 0.14357147475193 0.150451654640657 0.151426144964722 0.154372467308773 0.150114581774106 0.146142284243303 0.162594218187669 0.150318554174747 0.14357147475193 0.149447690503575 0.144690242210954 0.151963328705471 0.147256300952472 0.149860600645156 0.165298883287441 0.144868194826968 0.151873726569125 2 2|0 -|/ 16688942 16690498 16689845.4 16688552 16690718 - gene protein_coding_gene FALSE TRUE AT2G39960.1 microsomal signal peptidase 25 kDa subunit, putative (SPC25) Identical to Probable signal peptidase complex subunit 2 (EC 3.4.-.-) (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) [Arabidopsis Thaliana] (GB:P58684); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT4G04200.1); similar to Os02g0565200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047165.1); similar to Os04g0446300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052909.1); similar to hypothetical protein DDBDRAFT_0201716 [Dictyostelium discoideum AX4] (GB:XP_645946.1); contains InterPro domain Microsomal signal peptidase 25 kDa subunit; (InterPro:IPR009582) 0.141535924934132 1.54974540119146 0.149780910700467 1 0.480454222144953 18.7071477513017 0.141535924934132 0.0694834973945882
AT2G38160_at 1.14822573908243 1.29617876242892 1.21980960764521 1.95674396739537 1.17330070709402 1.33513783784710 1.39092249321740 1.11485084414772 1.20662849119803 1.41091174233148 1.54070364981464 1.67961167934385 1.68299429782040 1.51047167169293 1.83830659466230 1.85045431210464 1.7829156855298 1.51102057012109 1.86075672822801 0.257079142735645 0.252109056286525 0.264115779579443 0.258257171790141 0.250865173520185 0.258320663088254 0.246195478652507 0.250536586953188 0.25720067278 0.254863156159715 0.246195478652507 0.246195478652507 0.250357692727434 0.253174019748108 0.251129663596712 0.247957701769248 0.247984821359656 0.25694319923158 0.257902596880438 2 2 - 15993872 15994377 15994114.1 15993864 15995600 - gene protein_coding_gene FALSE TRUE AT2G38160.1 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G09000.1); similar to Os01g0141900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041987.1); similar to putative proteophosphoglycan [Oryza sativa (japonica cultivar-group)] (GB:BAD61066.1) 0.182748861996669 1.54931768202071 0.149882936390351 1 0.479912960772295 2.91305897563496 0.182748861996669 0.141372967677094
AT4G32700_at 1.59360989098146 1.55555639696457 2.00978469443414 1.45189622426714 1.46856855182067 1.77473049755785 1.59888246211096 1.62589816033948 1.27958747141724 1.45844617748336 1.79650735287800 1.48147964688100 1.38533363496755 1.39788155933232 1.84883428636237 1.59864814186286 1.99708170941383 1.71084169295683 1.48953307838771 0.159369423370565 0.156355849177369 0.157114261501626 0.160028898381268 0.157028642506199 0.156747671057293 0.156620353509711 0.154872805276634 0.160819300383702 0.158831151866477 0.155832434876512 0.154681168606116 0.165300495915205 0.159906395732577 0.154521664924325 0.154135820765696 0.156528002090621 0.160555955222563 0.15855456336904 4 4|0 +|/ 15769315 15778952 15773177.059 15767322 15779702 + gene protein_coding_gene FALSE TRUE AT4G32700.2 ATP binding / ATP-dependent helicase/ DNA binding / DNA-directed DNA polymerase/ helicase/ nucleic acid binding Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. similar to U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42270.1); similar to DNA-directed DNA polymerase; Helicase, C-terminal [Medicago truncatula] (GB:ABE83439.1); similar to Os12g0291000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066603.1); similar to hypothetical protein MtrDRAFT_AC149805g26v1 [Medicago truncatula] (GB:ABE88397.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DNA polymerase A; (InterPro:IPR002298); contains InterPro domain DNA-directed DNA polymerase; (InterPro:IPR001098); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Rad51, N-terminal; (InterPro:IPR010995) 0.162822679203286 1.54904299138836 0.149948491427696 1 0.479565398677912 3.16549831589851 0.162822679203286 0.110423602962000
AT1G56660_at 5.19338422352681 4.63881024222974 5.23307077637942 4.86793786729212 4.30695145792739 4.2377054151564 3.95689286399703 3.70699068050321 4.47205174458632 4.71083477103755 4.58595426625928 4.70703567312224 4.34855399262458 4.7327778722706 4.80722426597494 4.44854611969799 4.61084369666446 4.28114660688012 4.35034616755847 0.197828882243122 0.20095815007868 0.206681331617139 0.196517780340666 0.197007051668379 0.207333458609028 0.200333589289858 0.199931811939427 0.192053701057232 0.205207690106751 0.197184363345239 0.195589836127762 0.197355580982652 0.195817334112848 0.195819802245249 0.192053701057232 0.199857714412339 0.200145789992774 0.200614710770507 1 1 + 21243475 21244018 21243790.909 21241553 21244223 + gene protein_coding_gene FALSE TRUE AT1G56660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to KED [Nicotiana tabacum] (GB:BAA95789.1) 0.170789813625317 1.54879587536360 0.150007487099767 1 0.479252758311629 9.05588687725029 0.170789813625317 0.123357809344863
AT2G44450_at 0.885660784739162 1.18938866410836 1.53476681608267 1.23724785058299 1.15353603575257 1.53350565844463 1.46524907876952 1.47829073439831 1.46691201129401 0.975431778782936 0.955247691340619 0.952694852844388 1.31852848166244 1.44559880323822 1.50419816078591 1.47193485786079 1.44187060382464 1.54093181340241 0.93856443737849 0.185252934145252 0.186048911102876 0.187408942584062 0.187866761517860 0.179456715668622 0.193527936126286 0.185598034886914 0.188212825869157 0.179456715668622 0.185542641259310 0.189432607840630 0.187096477285387 0.18762632361171 0.188503335281403 0.185416150635942 0.180182114782228 0.188213035089664 0.199031571432570 0.181478537484876 2 2|0 +|/ 18349894 18350694 18350240.2 18347997 18350925 + gene protein_coding_gene FALSE TRUE AT2G44450.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G42260.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G25630.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE83886.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.156011511839996 1.54873274724145 0.150022561341144 1 0.47917289623508 2.53762823649565 0.156011511839996 0.0987041602811843
AT4G16447_at 2.69602343466282 3.44638516360838 2.68728653325102 2.9598827722172 3.07518407009356 2.75232732457419 2.97023167963766 3.10152980768270 2.41766941672899 2.90249946383236 2.7062346913668 2.74977352045015 2.04479043286164 2.63612929940597 2.49637855392620 2.58285448305341 1.93681629432915 2.39224410119644 2.58970546228381 0.278200557522839 0.289671699755208 0.292703511478481 0.284632929464852 0.28805348110764 0.285953851642882 0.272846516350159 0.274509280333945 0.275061717488891 0.276657290007521 0.272846516350159 0.276172888418872 0.286369471002534 0.276288015025414 0.280298333420774 0.272846516350159 0.279517861092949 0.276952250667826 0.272846516350159 4 4 + 9278884 9279199 9279043 9278809 9279411 + gene protein_coding_gene FALSE TRUE AT4G16447.1 unknown protein -0.189172227619282 -1.54871419108249 0.150026992580979 1 0.479149421599641 5.500995074727 -0.189172227619282 0.150749099712986
AT1G13710_at 1.40679751575044 1.43230065663987 1.27637088740447 1.12406001782307 1.41638703878825 1.50595698786014 1.18453838224214 1.36143623306197 1.50752668827581 1.92407659719041 1.42387332852840 1.29863412278475 1.92402599885878 1.41077081537517 1.27674722029128 1.43191306512620 1.56878048641592 1.91499864217179 1.90658503866027 0.211296421106586 0.216800237368751 0.212884219495683 0.214595436593424 0.213681107640296 0.209176148749273 0.210464425467974 0.212825504359884 0.215245734948079 0.218858254784864 0.20984934400598 0.220719023116511 0.211251289950124 0.210256295915635 0.216179322440807 0.209654955510578 0.229118584840463 0.211984766534247 0.215860862172923 1 1 - 4702989 4703390 4703176.182 4702722 4704654 - gene protein_coding_gene FALSE TRUE AT1G13710.1 CYP78A5 (cytochrome P450, family 78, subfamily A, polypeptide 5); oxygen binding member of CYP78A similar to CYP78A10 (cytochrome P450, family 78, subfamily A, polypeptide 10), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G74110.1); similar to cytochrome P-450 (GB:AAB37231.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.131876306026379 -1.54758364795805 0.150297183059447 1 0.477719540229299 2.99378799893939 -0.131876306026379 0.0434930945421929
AT1G76960_at 10.8901888300442 10.9672719197994 11.6944527476896 11.8500110546337 11.3120850045491 11.0662654574960 9.47525339413272 9.60767061125761 8.61207247619579 8.30200473534476 6.06130689543208 4.04322964594902 8.02795259910095 7.04770201097173 3.84887030168387 6.75050637148546 9.30581263544705 6.67874880904866 7.05192725047242 0.220054926611587 0.210128300057726 0.212774164905156 0.216154711496879 0.217400649530406 0.21154934968794 0.210128300057726 0.213154777166280 0.219291377015207 0.210577574280280 0.221959175627424 0.218893748950749 0.214424674502784 0.211783544919150 0.225578557521067 0.211754896473415 0.212673176493963 0.216808177289044 0.214821075097652 1 1|0 -|/ 28925761 28925778 28925770.111 28925351 28925850 - gene protein_coding_gene FALSE TRUE AT1G76960.1 unknown protein -0.136272309040433 -1.54733054373352 0.150357730868177 1 0.477399507564672 18.0874920337724 -0.136272309040433 0.0568983520039658
AT3G19670_at 6.31059504843646 5.97598088826808 6.03475302495662 5.94632911580628 6.49892857556196 6.18168222203161 6.05910585605747 5.73678348706304 5.99030400912478 6.43095947154305 6.46147714474464 5.93740151742906 5.80703837900145 5.2398113118178 5.28639374869953 6.19142539166807 6.26609386918487 5.84406615316605 6.58542089536003 0.250864160934144 0.242405193572267 0.242208649751219 0.242356233641043 0.249759062668443 0.251735766861909 0.248250830310724 0.244673997821773 0.248502363731305 0.246293644456477 0.239906957727902 0.239906957727902 0.252052755390800 0.248080859230894 0.245333427262331 0.239906957727902 0.242112401509465 0.239906957727902 0.251279756051004 3 3|0 -|/ 6828336 6830059 6829277 6828068 6836588 - gene protein_coding_gene FALSE TRUE AT3G19670.1 FF domain-containing protein / WW domain-containing protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G44910.1); similar to Os01g0532200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043246.1); similar to PREDICTED: similar to Formin-binding protein 3 (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas-ligand associated factor 1) (NY-REN-6 antigen) isoform 5 [Canis familiaris] (GB:XP_858026.1); similar to PREDICTED: similar to Pre-mRNA-processing factor 40 homolog A (Formin-binding protein 3) (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas ligand-associated factor 1) (NY-REN-6 antigen) isoform 1 [Homo sapiens] (GB:XP_371575.4); contains InterPro domain FF; (InterPro:IPR002713); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.155770552289584 -1.54717416337631 0.150395150919068 1 0.477201791398299 12.2004072263426 -0.155770552289584 0.0985534356456905
AT2G38000_at 7.69905974707902 8.08235017790065 7.89934245191661 7.93341634834166 8.1462074098016 8.00798044653912 7.16236463506828 6.93638004811405 7.74956902854499 7.19545761063706 7.00944821036649 7.2943764557633 7.15959113877009 7.51824239607732 6.70948249382441 7.24492530408999 7.06420698950695 7.34526218844136 7.2605064528014 0.169894842951155 0.167971238173453 0.176825403689398 0.166812481500984 0.161747361224082 0.166729424073766 0.165058311601144 0.166344988762337 0.179885967332340 0.162092903943996 0.157140152804169 0.160145759556119 0.171574499345958 0.158673917105338 0.171975265048961 0.159505175803739 0.159564954279316 0.165241769572014 0.167835836320689 2 0|2 /|- 15910400 15910940 15910672.4 15910203 15912469 - gene protein_coding_gene FALSE TRUE AT2G38000.1 chaperone protein dnaJ-related similar to PREDICTED: similar to fls485 [Canis familiaris] (GB:XP_541787.2); similar to Os05g0316200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055174.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) 0.146522772609877 1.54716821077957 0.150396575468249 1 0.47719426559971 15.0184057886449 0.146522772609877 0.0808460404172818
AT4G00910_at 1.91611986739198 1.72235710040522 2.0614886009682 2.23679068431285 1.69318546765925 2.18531254718724 1.71242778485178 1.89615626690288 1.60217171326855 2.08955799970687 2.05304484472005 1.93247458329256 1.96466398464455 2.02077323274044 1.77169204093048 1.70750054563856 2.21624967008697 2.01325710176403 1.94080277444037 0.203998734150353 0.202888478109933 0.212813673234764 0.205613050645498 0.200639833279815 0.215580826725418 0.207776342369180 0.206086818268931 0.209107447710784 0.204422823838519 0.208852569103198 0.209614297808363 0.205181149935006 0.203149763156233 0.203158784522739 0.207839384622972 0.197701478826878 0.199720549072351 0.200632313845993 4 4|0 -|/ 389507 390030 389809.2 389370 391287 - gene protein_coding_gene FALSE TRUE AT4G00910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08440.1); similar to Os04g0567200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053586.1); similar to Os02g0673100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047711.1); similar to Protein of unknown function UPF0005; Rho GTPase activation protein [Medicago truncatula] (GB:ABD32183.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.157437620741266 1.54710472582412 0.150411769138045 1 0.477114003406516 3.84671370476782 0.157437620741266 0.101531636975952
AT2G40580_at 1.33700502593516 0.954451830103469 1.28110974662982 1.44321437855373 1.27119012103547 1.05063937748741 1.34954937758127 1.12300450269769 0.971647628121074 1.26063396402359 1.47308631219162 1.58134926847815 1.35088771742998 1.42293862945875 1.56137584594060 1.02883512531480 1.29213041681391 1.5019052984232 1.27639047276462 0.200136767104757 0.207190971797265 0.204730036494271 0.204332642522317 0.199061672063862 0.201515970687668 0.195470024854508 0.200039594828115 0.201318205689913 0.20534810460403 0.197471373319544 0.197671411916795 0.207604221427564 0.206014464428972 0.197091835946234 0.197958532953675 0.202838819838940 0.199421600931614 0.200132186202178 2 2 + 16951387 16951855 16951620.636 16950942 16952081 + gene protein_coding_gene FALSE TRUE AT2G40580.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G40560.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93556.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.151270971816912 1.54655746311453 0.150542799324792 1 0.476422198036858 2.51183101086607 0.151270971816912 0.0903521151105415
AT4G00770_at 1.47302469749690 1.55295995614820 1.78223505418128 2.01975136795043 1.93953267417898 1.89319161212921 1.46149594932404 1.75852524401757 1.52149795260923 2.07564623034716 1.16004309778736 1.62544755855189 1.70836962534757 1.63718783002784 1.83544519515334 1.83577269843289 1.65421148232750 1.90610302392147 1.61250176563709 0.203352498488176 0.210743264376628 0.207085529867683 0.204154750750296 0.222272856822603 0.216002575008266 0.214148253399841 0.203352498488176 0.211744168694824 0.213057747458112 0.213125070993548 0.206110640050046 0.210879917561754 0.214059993694810 0.203352498488176 0.204945615130417 0.221860845015523 0.207105355604723 0.209807332882605 4 4 + 332453 332993 332770.818 331157 333477 + gene protein_coding_gene FALSE TRUE AT4G00770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11780.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP54700.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO00711.1) 0.140475064887933 1.54635039934007 0.150592402147718 1 0.476160483535927 3.43852517616577 0.140475064887933 0.0677299655077976
AT3G51940_at 3.80937670471479 3.65419457696169 3.69104011017543 3.77237246152443 3.57338115919713 3.77393923363762 2.76838808864319 3.40385700726021 3.38925389142779 3.85945755667325 4.02469211499564 4.12087971501063 3.79630421555267 3.45164074143239 3.83571946225008 3.98303963518422 3.90551925070033 3.20698929835049 3.99672854025605 0.240091564577998 0.233948139347582 0.236587658465292 0.239012226523726 0.244055489675286 0.239373025353797 0.240977419594108 0.236380313094027 0.248743545622034 0.236835955958522 0.242440126485956 0.238665074740285 0.243538089878858 0.245227945117008 0.233948139347582 0.239715600884776 0.234123566558194 0.23565222709851 0.236478799142260 3 3 - 19284490 19285026 19284732.778 19284472 19286247 - gene protein_coding_gene FALSE TRUE AT3G51940.1 oxidoreductase/ transition metal ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03990.1); similar to hypothetical protein LOC_Os11g04510 [Oryza sativa (japonica cultivar-group)] (GB:ABA91418.1); similar to Os01g0801200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044539.1); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) 0.167923602402107 1.54634870409397 0.150592808308298 1 0.476158340948359 7.32535769291611 0.167923602402107 0.119237141349743
AT2G16460_at 4.52457058925464 4.84511592949808 5.13049760346046 4.96781346735111 5.37589661794135 4.71583348406518 5.58493648036962 5.42334580665106 4.44310031025761 4.64762923531815 5.16308951813803 4.72714830256151 4.79356731958083 4.91994527023204 5.04245545569074 5.01963914457258 4.95774633583786 4.55538975368229 4.39981766227594 0.20366695748486 0.20383282624737 0.205105320075888 0.200155347331097 0.205026175360984 0.205195794129258 0.213082600788101 0.206571921970457 0.206371396938920 0.202926792612002 0.200155347331097 0.200155347331097 0.204586954730562 0.200155347331097 0.203176206753154 0.205643284082909 0.213004891630136 0.22502323023394 0.201564532324607 2 2|0 -|/ 7140807 7142440 7141754.5 7140472 7142734 - gene protein_coding_gene FALSE TRUE AT2G16460.1|AT2G16460.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51090.1); similar to Os06g0713100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058564.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89621.1); contains InterPro domain Protein of unknown function DUF1640; (InterPro:IPR012439) 0.17677083000713 1.54607161696369 0.150659207863613 1 0.475808155282574 9.76811210073438 0.17677083000713 0.133039573461614
AT4G23970_at 1.33781233057286 1.29488910519491 1.46004818106531 1.25733532168706 0.981971719385886 1.35358370878604 1.01245597788595 1.53193741908922 2.19377996983738 1.43069296771059 1.716009265428 1.35721501395102 1.43454663772880 1.867934208176 1.85138407920659 1.51406862284718 1.78223338178931 1.50734561555701 2.16471031453604 0.192435269331413 0.18209789308552 0.188132552331054 0.187740837141778 0.184699661908967 0.185721607133058 0.195316935354244 0.182372680450968 0.202195392975523 0.182554962153602 0.181251166383425 0.191902403198964 0.186624198830823 0.184245733076279 0.18328179032959 0.183331215868251 0.184268633523136 0.189801167860405 0.191591216427828 4 4 - 12445429 12445653 12445521.909 12445388 12445690 - gene protein_coding_gene FALSE TRUE AT4G23970.1 unknown protein -0.165962311531921 -1.54559096652220 0.150774448567354 1 0.475200794710116 3.05803914734848 -0.165962311531921 0.116203512973661
AT3G16360_at 1.20024545913214 1.16505139710481 1.33793388212061 1.59982075234008 2.03460770999600 1.76505349844569 1.58914329404032 1.38111766733411 1.53275708532272 1.16272783080302 1.27710199673049 1.28601974281381 1.48890046873162 1.07591461994635 1.29863399849751 1.26730639776065 1.77978330361133 1.57099991329820 1.63717476023943 0.165376944104181 0.161430085870813 0.165009361556561 0.160829378371321 0.162021149518843 0.171708543668647 0.171405206766997 0.161119070203513 0.166861606623832 0.161170302035225 0.163630479896434 0.163590270536527 0.168667618387694 0.175409171006837 0.159002983587813 0.168620818545962 0.164949315924925 0.159002983587813 0.161548354445497 3 3|0 +|/ 5554506 5555346 5554845.5 5554480 5555399 + gene protein_coding_gene FALSE TRUE AT3G16360.1 AHP4 (HPT PHOSPHOTRANSMITTER 4); histidine phosphotransfer kinase/ transferase, transferring phosphorus-containing groups Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (APH2), AT5G39340 (APH3), AT3G16360 (APH4), AT1G03430 (APH5) and AT1G80100 (APH6). Identical to Histidine-containing phosphotransfer protein 4 (AHP4) [Arabidopsis Thaliana] (GB:Q9LU15;GB:O04321); similar to AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT3G21510.1); similar to putative HPt phosphotransmitter [Oryza sativa (japonica cultivar-group)] (GB:BAD87514.1); contains InterPro domain Hpt; (InterPro:IPR008207) 0.143413584687387 1.54546942678373 0.150803601067750 1 0.475047232603829 2.92152293121195 0.143413584687387 0.0745858552579861
AT4G10420_at 1.64652329830152 1.90600065237086 1.54322204902873 1.27023516785953 1.54576757003098 1.71482780676348 1.21874320401731 1.39780553695483 1.05987045182866 1.78991481292900 1.88192582984345 1.91503254165178 1.96810151726353 1.49725407078554 2.01008569827679 1.91113364366497 2.01735019502174 1.83980269546467 1.84968355392986 0.207720892971122 0.218959612067597 0.207886585072085 0.202957794934979 0.213026685748546 0.207024678321475 0.218530839877832 0.205918497681793 0.216127925486534 0.211649166997168 0.214429479062308 0.202247967388035 0.21757403649682 0.207384562696316 0.220695916355454 0.209291197933109 0.218217604029429 0.211046097078584 0.212108117244846 4 4 - 6453414 6454059 6453707.545 6453414 6454205 - gene protein_coding_gene FALSE TRUE AT4G10420.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10400.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81497.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.144920571638465 1.54526350267823 0.150853005179616 1 0.474787069956576 3.25367835077877 0.144920571638465 0.0778736406180426
AT4G18720_at 1.90121458511372 1.87939799822014 2.25249101131105 1.90866758597712 1.96112534220101 1.91125214841646 1.98584717960462 1.86916880046203 2.31168503695176 2.23014317260104 1.82970057983654 1.37856308642007 1.91491124564402 2.2766633641519 1.82496714797498 1.91836393485601 2.00687860815799 2.11751268592507 2.31376899659312 0.200837702895176 0.199633098573416 0.2120010653673 0.200312959439293 0.199633098573416 0.204047045232565 0.213458583247811 0.200173369813613 0.210532416102663 0.204828831630579 0.207449233569334 0.207281595485841 0.209293115631166 0.200854550269342 0.200583939597972 0.201937766604536 0.203230246379037 0.209431206873284 0.206501906619005 4 4|0 +|/ 10300250 10301215 10300678.3 10299956 10301239 + gene protein_coding_gene FALSE TRUE AT4G18720.1 transcription elongation factor-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42730.1); similar to Os07g0229700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059227.1); similar to putative transcription elongation factor [Oryza sativa (japonica cultivar-group)] (GB:BAC20918.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990); contains InterPro domain Transcription elongation factor S-II, N-terminal; (InterPro:IPR003617) -0.138638552984100 -1.54520169974644 0.150867835325583 1 0.474708992810627 4.05546765658133 -0.138638552984100 0.0635352683642907
AT2G45700_at 5.57129021272368 6.15787086064332 5.45376467367225 5.81321781620952 6.32709101559117 6.07311807877641 5.5062330794755 5.90597322039816 5.27545132781153 5.32695325420581 4.940521321753 4.90834438862412 4.84667210571687 4.87445483842087 4.36417988864298 5.63903130922152 5.50135454379894 4.73547822062577 5.82725705610389 0.218394669962111 0.219627990780152 0.227181319952109 0.218260712274435 0.218410275819396 0.231411124860455 0.219997960423033 0.219099779771243 0.247440641474630 0.225663334741857 0.225374786900830 0.222753427563214 0.230099513995334 0.227399029472610 0.22132630788039 0.221447729832091 0.227097838964108 0.229568931774442 0.224345869467277 2 0|2 /|- 18834309 18835044 18834690.111 18834074 18837602 - gene protein_coding_gene FALSE TRUE AT2G45700.1 sterile alpha motif (SAM) domain-containing protein similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.3); similar to putative SNM1 [Oryza sativa (japonica cultivar-group)] (GB:BAD36078.1); similar to Os09g0439000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063271.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain DNA repair metallo-beta-lactamase; (InterPro:IPR011084); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.184421624760528 -1.54514125337741 0.150882341179370 1 0.47463263128246 11.0774740979234 -0.184421624760528 0.144537204044645
AT2G41560_at 9.68906834454866 9.734337420459 9.1927188031249 9.06443214200983 9.44732559613788 9.49364004033376 9.217585461062 9.35408957129142 9.7730565843565 9.78168084289947 9.80851466430302 9.9463756998572 9.75939341164618 9.7091249370907 9.72877095661867 9.77099848490983 9.41080777490792 9.18558761453065 9.61795535730403 0.0933661043741054 0.0911916438541149 0.0954918700343227 0.098193677545495 0.0973097338796787 0.0986084008979708 0.105909976388837 0.0972193708723027 0.105397669696850 0.0913533397879607 0.09736928341277 0.0932431479788006 0.0934926119994127 0.0997919009432996 0.0966525011458301 0.0940167185563392 0.0986940653773926 0.105925944298249 0.0944780244583949 2 2 - 17339376 17339922 17339650.182 17339162 17344347 - gene protein_coding_gene FALSE TRUE AT2G41560.1 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4); calcium-transporting ATPase/ calmodulin binding encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole. Identical to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4) (ACA4) [Arabidopsis Thaliana] (GB:O22218); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17949.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL73984.1); similar to calmodulin-stimulated calcium-ATPase [Brassica oleracea] (GB:CAA68234.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.129262644571162 -1.54513971658769 0.150882709992307 1 0.474630689889115 19.0937384829558 -0.129262644571162 0.0343002710373328
AT1G63650_at 1.6053003605055 1.69835114158380 1.91802199689966 1.88823094005076 1.29229850475608 1.66646371950276 1.58950970364482 1.79142704044364 1.82367029149647 1.84765192128126 1.98718783975676 1.65486161268663 1.20879337847900 1.21089700813627 1.68381027457409 1.32115650681905 1.58600030613134 1.81423463807573 1.92664559120454 0.216042590915950 0.217246755360022 0.216930309186024 0.220143699212026 0.215574579090843 0.220517844396652 0.214295456019244 0.226111873801178 0.218215518984554 0.212318780557039 0.218970809265469 0.220863760581455 0.214557572425278 0.212318780557039 0.212318780557039 0.214644847220405 0.213059065448134 0.219289530204330 0.221811756462652 1 1 + 23605594 23606365 23606042.182 23603168 23606565 + gene protein_coding_gene FALSE TRUE AT1G63650.1|AT1G63650.2 EGL3 (ENHANCER OF GLABRA3); DNA binding / transcription factor|EGL3 (ENHANCER OF GLABRA3); DNA binding Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY. Identical to Transcription factor EGL1 (ENHANCER OF GLABRA3) (Basic helix-loop- helix protein 2) (bHLH 2) (AtbHLH002) (AtMyc-146) (BHLH2) [Arabidopsis Thaliana] (GB:Q9CAD0;GB:O22418); similar to GL3 (GLABRA 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G41315.1); similar to GHDEL65 [Gossypium hirsutum] (GB:AAK19613.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.143757421826926 -1.54467993054634 0.150993088896822 1 0.474049904889021 3.3933789077116 -0.143757421826926 0.0754955158396712
AT2G39080_at 6.31367358994594 6.48385670770292 5.9326617574108 5.85872721482576 6.52704822684763 5.9716628242053 6.69770719812692 6.41601331288356 5.67304383030936 5.91611853874426 5.70058782265664 6.17840252971699 5.54189428634845 5.81024871688899 6.78057778360792 5.65193928275712 5.45571680834482 5.43012723909017 5.63245675778441 0.143964198734140 0.142667817782597 0.148142252580265 0.142411270635289 0.140280445661162 0.143469267591513 0.14174970577091 0.145899698697947 0.146224134867274 0.143339854283208 0.144779077868605 0.142609584630361 0.144603241955063 0.142990853440948 0.144160954036237 0.141073679301667 0.146097685840112 0.146667548881153 0.144204796133209 2 2|0 -|/ 16317082 16319516 16318294.789 16316878 16319619 - gene protein_coding_gene FALSE TRUE AT2G39080.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54696.1); similar to Os01g0367100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043040.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720) -0.163570298306045 -1.54459382069145 0.151013768734834 1 0.473941145756397 12.0547821128048 -0.163570298306045 0.112449983175356
AT1G67250_at 9.83530989826674 9.94681694666827 10.1604091038276 10.1131009647529 9.93045488728358 9.69928359035513 9.72216892609145 9.8042804377186 9.6244629462458 9.69270618813606 9.95498199312191 9.7909478246936 9.65674281299544 9.87558904335617 9.81452257391995 9.71245157227153 9.40189195667299 9.49846582767123 9.47186432526656 0.0826182385191196 0.0824537425307913 0.0853377787026417 0.0833185895172373 0.0836585411568044 0.0895142643212681 0.08533721451301 0.0852855102434735 0.0928353107835386 0.085839743744577 0.0838984416348542 0.0829771348408208 0.0857501284093706 0.0893033021314689 0.0870982965079266 0.0844723245543595 0.0844261098316293 0.0853012978047545 0.0867405276611089 1 1 - 25167473 25168561 25167947.727 25167305 25168719 - gene protein_coding_gene FALSE TRUE AT1G67250.1 proteasome maturation factor UMP1 family protein similar to proteasome maturation factor UMP1 family protein [Arabidopsis thaliana] (TAIR:AT5G38650.1); similar to hypothetical protein [Picea mariana] (GB:AAC32110.1); contains InterPro domain Proteasome maturation factor UMP1; (InterPro:IPR008012) 0.132761399203458 1.54434539052212 0.151073444651128 1 0.473627392266097 19.5562499379392 0.132761399203458 0.0473469308174871
AT4G18650_at 2.08398952847412 2.40514003533079 2.67687628200062 2.67921888748845 2.25907254445383 2.47881359367677 2.56575831692987 2.48078692015442 2.92694712486766 2.90605294515589 2.90785431642865 3.06065360922573 2.89368848464585 2.65925586720461 2.77339177836164 2.78669569135641 3.304373109472 3.0261746230964 2.52057702080791 0.213630255365437 0.213630255365437 0.21816007722048 0.215264746155002 0.216353553069604 0.219453556013624 0.216398593829117 0.223574982852712 0.222292320075607 0.214676375123258 0.223654140134939 0.222833124317554 0.226756457212592 0.216017638992921 0.219817140476612 0.220425509360320 0.22085968897279 0.218942374766287 0.224725385336872 4 4|0 -|/ 10264054 10265289 10264675.1 10263980 10265450 - gene protein_coding_gene FALSE TRUE AT4G18650.1 transcription factor-related similar to ZW2 [Arabidopsis thaliana] (TAIR:AT1G58330.1); similar to predicted protein [Gossypium hirsutum] (GB:AAT64037.1) 0.140780932356353 1.54409193137319 0.151134349724402 1 0.473307319139061 5.30922532952247 0.140780932356353 0.0689290874407826
AT3G57840_at 2.32440255904024 2.54158270802538 2.51952965908882 3.02304095650244 2.42193169040580 2.93754236489173 2.04614562443416 2.38213601287007 2.11613992773903 2.49292384376092 2.27438800725953 2.00105419652789 2.30914110040234 2.49532445142801 2.12495610363507 2.43214762149106 2.41891839781495 2.03874850663145 2.28427815907534 0.211993560671983 0.212781784665042 0.215884777223802 0.219161685621508 0.211023629764130 0.215320948354343 0.218218820103605 0.212162331023501 0.214027622165794 0.209685778307930 0.229681549882694 0.210277969303541 0.211360040547231 0.209685778307930 0.210439493234617 0.214573974578750 0.220330175502086 0.213799085195878 0.212923145042095 3 3 + 21433906 21434209 21434033.455 21433800 21434264 + gene protein_coding_gene FALSE TRUE AT3G57840.1 self-incompatibility protein-related similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G17080.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) 0.182999298126713 1.54408754681403 0.151135403501765 1 0.473301782514386 4.80434666774427 0.182999298126713 0.142645207940373
AT2G26040_at 2.61150413939183 3.42188901751821 2.70409348441560 3.07147625246396 2.94998169592046 3.28718799290858 3.51320462838958 3.68027916383418 4.31116427726665 3.41195532914316 3.73300275852701 3.80996956403954 4.10444569581907 3.39464407323592 3.78541560323364 3.94105047196454 3.65084876931556 3.37033951747727 3.73948831368038 0.215222003305778 0.213631442876907 0.209389909065159 0.213096273212593 0.212873670009809 0.212800848696978 0.213021849870658 0.216602201052739 0.226683489548940 0.212151011121669 0.211093550823634 0.212099397004756 0.213386407546675 0.210788751114825 0.214779267145815 0.208489420594678 0.220490382616311 0.214969945831196 0.208489420594678 2 2 - 11101918 11102452 11102141.455 11101910 11102482 - gene protein_coding_gene FALSE TRUE AT2G26040.1 Bet v I allergen family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73000.1); similar to Os06g0562200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057874.1); similar to Bet v I allergen-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25659.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.200344565425732 -1.54380541965089 0.151203222890889 1 0.472945545125554 6.92724397855445 -0.200344565425732 0.167185112637849
AT1G09310_at 13.1979283641102 13.136034510224 13.4515733779928 13.3615297024998 13.7357052530770 13.6955068232790 14.1719963761371 14.2375586713224 14.2648439397728 14.464647783261 14.9388718795905 14.8758833843460 14.8122330933886 14.7625481976567 14.8000243342296 14.2958461276297 14.4728162931320 14.8728272840094 14.3213873219757 0.0473924396710468 0.0446383524296099 0.0446529923081225 0.0466369481576659 0.0438752989744296 0.0455667743672870 0.0463414846369945 0.0491996494167535 0.0505751770092255 0.0465175835638892 0.0452562043085603 0.0446667396680193 0.0447128826537594 0.0469227390421854 0.0461294395014111 0.0469510004597132 0.0478182473053592 0.0466475208106285 0.0469526709581563 1 1 + 3009201 3009612 3009439.727 3009057 3009882 + gene protein_coding_gene FALSE TRUE AT1G09310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56580.1); similar to Os12g0563600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067038.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10818.1); similar to Os11g0683600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068462.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.126893809004189 1.54305801784927 0.151383015670812 1 0.472002004788323 28.1630663044558 0.126893809004189 0.0231227460029802
AT4G10890_at 3.80122995052931 4.10006036616188 4.14488282046945 4.12054633017895 4.51778815953675 4.5643577328741 4.43598234055529 3.99401004994149 3.76505782575457 3.36497987744183 3.61472833219564 3.74981929798906 3.28186033636855 3.70255022845449 3.34498415296659 3.66622136164393 3.66858458336191 3.593422840166 3.45252463458186 0.228213325930522 0.223071512852333 0.224752631779739 0.224906280427404 0.225058886083347 0.231995453744961 0.221672739073571 0.218942808335172 0.225007884491709 0.229090644675150 0.217850107920892 0.217850107920892 0.217850107920892 0.22368980212196 0.230015020829837 0.217850107920892 0.221957260449278 0.231407574366787 0.218190212812895 4 4|0 +|/ 6691186 6692898 6692110.333 6688829 6693757 + gene protein_coding_gene FALSE TRUE AT4G10890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08200.1); similar to PIF-like transposase [Daucus carota] (GB:ABB83644.1) 0.152161848175835 1.54257651780133 0.151498942333734 1 0.47139429359852 7.76250330423225 0.152161848175835 0.092774105390787
AT4G39100_at 8.67367810330862 8.84253749684628 9.0081939961293 9.18471102554103 9.54738649398694 8.98470103074678 9.04642814583007 9.23357969471994 8.05799504920858 8.359477271861 8.59750489956969 7.9928037605379 8.56835120961364 8.63352462126145 7.8654799461303 8.59650446384969 8.22411891500303 7.84651154994271 8.17638345894056 0.214637589422035 0.215918668344931 0.207864674193265 0.211010215744966 0.217981865681709 0.237687889032402 0.227813810353267 0.215285162115859 0.247689050182404 0.20774140107998 0.215085609452757 0.208719441974805 0.219134482990509 0.213141181214705 0.214005685059286 0.208542591603301 0.230585337726118 0.235443458768617 0.209338995598098 4 4|0 -|/ 18218631 18219920 18219522.5 18217933 18220276 - gene protein_coding_gene FALSE TRUE AT4G39100.1 SHL1 (SHORT LIFE) Putative transcription factor containing a PHD finger and BAH motif, required for normal development similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G22140.2); similar to Os09g0386500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063075.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); similar to Os07g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059071.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) 0.162420135246645 1.54202080676351 0.151632832076989 1 0.470693062989708 17.3094279220929 0.162420135246645 0.110986256614431
AT2G20410_at 5.30012878274427 5.37289776558595 5.17906377363967 5.50175873249126 5.55469269358323 5.67818590978904 5.22278286714937 4.87747589923295 5.10229632405289 4.47237781641953 4.78545286157478 4.85870867354292 4.57500939635114 4.87377840888833 4.51760546116560 4.98186567371734 4.83635091397609 4.95473168892339 4.78482656744964 0.202058993964596 0.211042237247348 0.213647762001265 0.200502865045238 0.217941002246950 0.209346942958460 0.208406944021222 0.200851930898282 0.207337611578971 0.202717070643126 0.20346377482733 0.199613134474954 0.201696438215003 0.201352827626784 0.211751867764259 0.199613134474954 0.213251245652035 0.209102443353449 0.202877617987696 2 2|0 +|/ 8810623 8810947 8810772.778 8809425 8811451 + gene protein_coding_gene FALSE TRUE AT2G20410.1 activating signal cointegrator-related similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44740.1); contains domain SUBFAMILY NOT NAMED (PTHR12963:SF8); contains domain FAMILY NOT NAMED (PTHR12963) 0.148270798745545 1.54153107989829 0.151750909236821 1 0.4700752230973 10.1280923633977 0.148270798745545 0.0854677789483855
AT4G13330_at 1.4051597097078 1.49772344602346 1.81437824883404 1.82282732550817 1.70921917088299 1.64266540153603 1.52549271740431 1.51708045959482 1.87719792795919 1.65114963597711 1.86008658282494 1.53494043126365 1.65846013833438 1.69658913372233 1.79466078612478 1.44933308855201 2.00077517913018 1.38479682405334 1.51408869155436 0.209730818772517 0.207336169597095 0.218261236725911 0.206815957283164 0.211193745605344 0.209504186042772 0.214641089964485 0.206815957283164 0.223861483575277 0.224016352363996 0.206815957283164 0.215446263016945 0.219565624302764 0.215752424002696 0.210745741895464 0.206815957283164 0.209682923480254 0.214590778172762 0.208085648836265 4 4 - 7754244 7754787 7754516.364 7754244 7755951 - gene protein_coding_gene FALSE TRUE AT4G13330.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83614.1); contains domain UNCHARACTERIZED (PTHR12176); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) 0.126275819422432 1.54146847679089 0.151766009118845 1 0.469996251590006 3.29345198776858 0.126275819422432 0.0198369281870353
AT1G18485_at 4.31575007409188 4.62752964548072 4.01612397396682 4.23266258749171 4.43886232525268 4.35210435860702 4.3798525864271 4.62798531633057 4.02037679558119 5.16366841343697 4.79347392043109 4.9792765114947 3.97517428230009 4.35545415063732 5.09866280961186 4.59468986718555 4.74688136310051 3.97594086589514 4.70033725254639 0.234544519843373 0.228171446036088 0.227030355296927 0.234615038499528 0.230654301974372 0.236372760802632 0.22716309864177 0.225714539502489 0.23515906614805 0.233968869653224 0.228919825974647 0.228004829494382 0.229494701857584 0.236836437821439 0.225690610535598 0.225690610535598 0.232943448358282 0.237495433443931 0.228706726832659 1 1 + 6365483 6365970 6365731.091 6363165 6366228 + gene protein_coding_gene FALSE TRUE AT1G18485.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to Putative Putative Pentatricopeptide (PPR) repeat-containing protein [Brassica oleracea] (GB:AAW81739.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.145512180054581 -1.54128736826433 0.151809699885894 1 0.469767800898471 8.97039471271617 -0.145512180054581 0.0799040943710695
AT3G06970_at 1.80727273495627 2.04215326364007 1.53298915189276 1.69481561530367 0.981127881341914 1.40334293644898 1.07343561726624 1.94303067805828 1.90259061249116 1.73942245284763 1.59268485225171 1.51211113303457 1.79571531638826 1.67650163363345 1.87795147517795 1.79461567685138 1.93574842532958 1.94001030753826 1.94654531031869 0.237235115620804 0.239914569879767 0.249213124135112 0.237235115620804 0.252646510298744 0.245055152891698 0.243535304745738 0.241943096321355 0.25945177193401 0.251527317860088 0.247882299578779 0.248024488705243 0.246151167001016 0.237235115620804 0.237235115620804 0.240735355340857 0.252139850680496 0.242199868348801 0.237235115620804 3 3 - 2199697 2200533 2200139.75 2199659 2201156 - gene protein_coding_gene FALSE TRUE AT3G06970.1 RNA binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G46780.1); similar to RNA-binding re (GB:ABF94944.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.205294808296781 -1.54094324009389 0.151892747765018 1 0.469333762024605 3.37403105706926 -0.205294808296781 0.174417964984394
AT3G48700_at 1.40606387658343 1.1147462486581 1.44644836203037 1.85934980918858 1.64401113197436 1.84763764762281 1.32236737935402 1.54094581521326 1.77263142624245 1.81023281922859 1.82842616377982 1.69505374547814 1.78202774051702 1.81618630417393 1.70553108383633 1.61172921598287 1.41014404031932 1.69421566240510 1.61517595276808 0.207753624495813 0.205897345129250 0.202845081494971 0.200009795331756 0.196870772876516 0.204870277227335 0.204383832703592 0.198683236209341 0.202595748187363 0.205102253866953 0.198603065522918 0.197173547418637 0.206608867359792 0.211243819856556 0.211677265300879 0.201346625410293 0.210642227041979 0.201433054529232 0.205913957872854 3 3 - 18049830 18050375 18050187.727 18049633 18050861 - gene protein_coding_gene FALSE TRUE AT3G48700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48690.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83378.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.156782543116845 1.54036138614985 0.152033255430207 1 0.468600021173476 3.23549343914875 0.156782543116845 0.101586751500547
AT4G13770_at 12.3429375142375 12.4194975276562 11.9873172232646 12.0075035108483 12.1908985079589 12.1057136723084 12.5242443818451 12.7012305849778 11.7048183212636 12.7090262168779 12.4828360946244 12.0968843192836 12.2769775800545 12.5084987478250 12.0494090803618 12.2918473890069 12.4411496075331 12.5475282374305 12.1007202936633 0.0749790698473237 0.0728880744662916 0.0720550945467217 0.0725374657900188 0.0719423011367475 0.0743646359870188 0.071854153681818 0.0722996938185168 0.0786161332040523 0.0710389250993138 0.0751040899222699 0.0730355015579764 0.0704423014255376 0.0711312407972539 0.0744291360193032 0.073900603829988 0.0734160970013264 0.0734186558798694 0.0704288345212324 4 4 - 7990700 7991127 7990910.636 7990481 7992305 - gene protein_coding_gene FALSE TRUE AT4G13770.1 CYP83A1 (CYTOCHROME P450 83A1); oxygen binding Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis. Identical to Cytochrome P450 83A1 (EC 1.14.-.-) (CYPLXXXIII) (CYP83A1) [Arabidopsis Thaliana] (GB:P48421;GB:O24429); similar to CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31500.1); similar to cytochrome p450 dependent monooxygenase (GB:AAA79982.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.129374751085384 -1.53975574145890 0.152179628105736 1 0.467836459062598 24.5391243616954 -0.129374751085384 0.0366489960899384
AT3G54040_at 2.20916678582731 2.26962059420967 2.26445038372472 1.98741001288333 1.68769398672489 2.13732243646295 1.50397706982703 2.12826895255878 1.65675965590931 1.63199360452149 2.27709723314058 2.47087590233833 2.19146663403226 1.90151892481108 2.44986895573669 2.21561709908697 2.22957697841636 1.95860854991063 2.22927084147580 0.221929419862641 0.219434348721231 0.224550639863162 0.216526544012295 0.215636513369899 0.216982078301571 0.230472438915108 0.2234257989825 0.222222650296997 0.215424156073963 0.215005798559654 0.220706952890811 0.217446377282144 0.21863767389535 0.217977249849515 0.213147282398825 0.221365293159218 0.225687767535862 0.213199254889271 3 3|0 -|/ 20025062 20026236 20025689 20024739 20026415 - gene protein_coding_gene FALSE TRUE AT3G54040.1 photoassimilate-responsive protein-related similar to photoassimilate-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G52390.1); similar to NtEIG-E80 [Nicotiana tabacum] (GB:BAB16427.1); contains InterPro domain PAR1; (InterPro:IPR009489) 0.181974135862593 1.53974147487318 0.152183077540834 1 0.46781847478109 4.04907385377049 0.181974135862593 0.141895551635081
AT1G62490_at 0.898897637906975 0.744300169214637 0.995125673002672 0.647113567095568 0.201508837394074 0.571935000366786 0.82912550844072 0.69612953306948 0.562559820934521 1.24697980773330 0.940287193330004 0.90121430662896 0.77987652447325 0.493517747324382 0.693066597289752 0.506609949160991 0.817971531249766 0.83454357871212 0.780912495034512 0.194282028102276 0.192738514271460 0.191172153758514 0.192649810687137 0.193596159016933 0.193099871409857 0.189849820141855 0.197133030723837 0.197016334480144 0.195087001341045 0.193856379467320 0.191090716658177 0.196931614301826 0.196620966254973 0.191092872673503 0.194266926769211 0.192288370416138 0.199156931193988 0.192370956190627 1 0|1 /|- 23134099 23134583 23134298.889 23134070 23135198 - gene protein_coding_gene FALSE TRUE AT1G62490.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT1G61960.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.152895277703068 -1.53915188247956 0.152325691098242 1 0.467075330983036 1.50270197568900 -0.152895277703068 0.094772715517666
AT2G20790_at 6.13887861322821 5.8463779370639 6.19220820581788 5.76258426744454 5.57929661934772 5.5778674608634 5.31038671304958 5.3289969692159 5.46112074398218 5.46517092152603 5.68899203330084 5.78397413974377 5.70081012577279 5.78534816298894 5.76162884206921 5.9442000586225 5.75397005129519 5.50596273188828 5.75901201200987 0.187446908675152 0.187446908675152 0.1878812914876 0.190470669857274 0.188597348951484 0.210583277964425 0.200387963107139 0.197042956622255 0.194103719412990 0.197707629963723 0.192330331240567 0.191246672827454 0.207074053732405 0.197232570578529 0.190414891776430 0.189136789945693 0.209727207387133 0.197845560482080 0.191960273885658 2 2|0 -|/ 8957422 8958067 8957765.3 8957009 8959825 - gene protein_coding_gene FALSE TRUE AT2G20790.1|AT2G20790.2|AT2G20790.3 similar to Adaptor complexes medium subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99308.2); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) 0.150335977966576 1.53886616890584 0.152394842683084 1 0.466715269745143 11.368263928612 0.150335977966576 0.0900020285976274
AT3G12650_at 6.29355425450223 7.07451331531227 6.20364249718985 6.17598304864533 6.97074663794182 6.71264776276823 6.18044249770886 6.5327557164391 6.29498663367104 6.29568020574008 5.97418032733003 6.00311859646426 6.37348494464789 6.02170182877429 6.14494271472185 6.00436678533275 5.63644865936344 6.23069748983115 6.68683314692161 0.237295657184767 0.228435968614728 0.224320200250863 0.242553713011724 0.22155615682344 0.229831199287658 0.229221035660946 0.22155615682344 0.240334496126893 0.223569382911611 0.225867543580878 0.233466888266655 0.225586521437484 0.232336312873908 0.232670764807343 0.226953115013922 0.247601488530316 0.237355977363916 0.227134432856668 3 3 - 4017892 4018443 4018128 4017837 4018638 - gene protein_coding_gene FALSE TRUE AT3G12650.1 similar to Os02g0718000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047937.1) -0.190888559911838 -1.53878224715104 0.152415159542926 1 0.466609517849431 12.7552612148564 -0.190888559911838 0.154920341862475
AT1G30560_at 0.268667659080962 0.239648404228197 0.238555532463599 0.357985069474458 0.293391001940384 0.494957877567749 0.638606973972891 0.43536712858072 1.39978827799144 0.322697790346988 0.689698239741661 0.445585928849708 0.459151796417339 0.812233771637785 0.449527016141744 0.500072878828445 0.962529415338115 0.639872338798988 0.795625359419499 0.191021471953547 0.19377099249696 0.192266512920190 0.191225237139372 0.189329671752076 0.190240833736179 0.189712097005949 0.193516681463175 0.191937174869263 0.203323921608520 0.19087644929884 0.189329671752076 0.199189367474952 0.201656412266550 0.197471562862212 0.193518486097156 0.194138411265640 0.192693206051134 0.191142190832950 1 1 + 10825730 10826062 10825893.727 10824743 10826275 + gene protein_coding_gene FALSE TRUE AT1G30560.1 transporter, putative similar to transporter, putative [Arabidopsis thaliana] (TAIR:AT4G25220.1); similar to Os08g0156600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061024.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.134443361902115 -1.53868940446688 0.152437638837711 1 0.466492528577408 1.10049965548289 -0.134443361902115 0.0539090059206775
AT1G30840_at 2.01870153974235 1.81933239405806 2.00153781055516 2.16805875727447 2.25761643691788 2.52967917409788 2.03631264713338 1.88744699376977 1.88636151199820 2.42659638617281 1.69783697021215 2.29154692905512 1.89173639278201 2.53762514058274 1.75782952988305 2.28401871274200 1.89577215206232 2.32126425949587 1.99302052109756 0.202469292773606 0.208489328642245 0.200176624110616 0.218792217301182 0.209640877830327 0.222511559524126 0.199598351144996 0.202073669736550 0.206212024744866 0.198939935992817 0.208804037304766 0.200923330576289 0.197071211582465 0.199939251962728 0.214686066693946 0.202978956785868 0.212044750402771 0.210370771338764 0.198977398622034 1 1 + 10975126 10975549 10975340.182 10974428 10976017 + gene protein_coding_gene FALSE TRUE AT1G30840.1 ATPUP4 (Arabidopsis thaliana purine permease 4); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to PUP1 (PURINE PERMEASE 1), purine transporter [Arabidopsis thaliana] (TAIR:AT1G28230.1); similar to Os01g0504100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043142.1); similar to Os01g0680200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043870.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD19737.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.140742802732252 1.53858087661867 0.152463919513241 1 0.46635578020587 4.183184002831 0.140742802732252 0.0700083434963377
AT2G46550_at 10.0648134257779 10.1214940016380 10.2620274672079 10.1100244066152 10.9427940715472 9.98993819423964 10.1168769684773 9.93387215542031 9.7371113760609 9.717308282599 9.86314040904965 9.66570064542082 9.87039629898122 9.80652091767529 9.46134075177188 9.6957286659409 10.0352607952214 9.66848670757735 9.40994020690947 0.120405841876626 0.116720272111462 0.122557539582867 0.116720272111462 0.126168781690699 0.131651623213298 0.122916005796857 0.1189342874538 0.129707159063511 0.117810393020125 0.123563522195838 0.123134239216390 0.124741718557919 0.127158116053288 0.117217737202349 0.120965738097298 0.131301828279491 0.120246190137726 0.123897993661842 2 2 - 19119365 19119848 19119614.273 19119061 19121245 - gene protein_coding_gene FALSE TRUE AT2G46550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01240.3); similar to Os09g0363500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062992.1); similar to Os08g0400300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061754.1); similar to hypothetical protein MtrDRAFT_AC145165g14v1 [Medicago truncatula] (GB:ABE91800.1) 0.201900253752911 1.5385765631339 0.152464964131013 1 0.466350345206479 19.8826176801044 0.201900253752911 0.170240646771474
AT1G67630_at 2.00695719106334 1.49870305023106 1.91088672482112 1.65778791061293 1.48212034393562 1.08251689020526 2.3717982179356 2.19163053908524 1.82019786361351 2.12919478290411 2.03164186610247 2.64400332785417 2.16144879345494 1.56169684619213 2.81803734939888 1.51421043121980 2.28157466081520 1.68156987235636 1.87958572423034 0.209059387450974 0.214880393591319 0.210229465399003 0.214204542106225 0.211884705297961 0.216246507846122 0.214849712164956 0.208656298333412 0.209294419756035 0.213400188504196 0.221551194213224 0.208656298333412 0.209770267447525 0.208656298333412 0.208656298333412 0.208692433642303 0.213734677417602 0.21522621351783 0.216145424808589 1 1|0 -|/ 25348256 25349211 25348717.125 25348103 25352069 - gene protein_coding_gene FALSE TRUE AT1G67630.1 DNA polymerase alpha subunit B family similar to Os12g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066483.1); similar to DNA polymerase alpha subunit B family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97199.2); contains InterPro domain DNA polymerase epsilon subunit B; (InterPro:IPR007185) -0.170082089505079 -1.53792592852504 0.152622602718301 1 0.465530651045503 3.79018295032305 -0.170082089505079 0.124132750186738
AT3G45780_at 10.9168872479303 11.2090849159786 11.1315057948009 11.1754259967022 11.8342334712464 11.4530184741195 11.5576604630524 11.4068645357383 11.4314201665843 11.3286990253928 11.7212947097528 11.6062140643803 11.7358415844096 11.5667785296606 11.4933049510560 11.6844120448482 11.2932924154749 11.6216133255926 11.4951631215886 0.0809341238304186 0.0801932796993831 0.0787587477908433 0.0787587477908433 0.0797083989361303 0.0840959042321299 0.0813755693299669 0.0817988630987561 0.08555735806304 0.0787587477908433 0.0801364510395481 0.0794811507607525 0.0817260247406548 0.0851912237335968 0.080520556981739 0.0787587477908433 0.0867351241951636 0.0826697092890551 0.0787587477908433 3 3|0 +|/ 16833977 16834855 16834281.125 16827851 16835195 + gene protein_coding_gene FALSE TRUE AT3G45780.1|AT3G45780.2 PHOT1 (phototropin 1); kinase Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. Identical to Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl protein 1) (Root phototropism protein 1) (PHOT1) [Arabidopsis Thaliana] (GB:O48963); similar to PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE), kinase [Arabidopsis thaliana] (TAIR:AT5G58140.1); similar to phototropin 1 [Pisum sativum] (GB:AAM15725.1); similar to phototropin [Phaseolus vulgaris] (GB:BAD89967.1); similar to phototropin-like protein PsPK4 [Pisum sativum] (GB:AAB41023.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold-3; (InterPro:IPR013655); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.148919079417007 1.53782255751499 0.152647660925115 1 0.465400439854082 22.8399708079471 0.148919079417007 0.087452168345872
AT3G52150_at 10.8638980505132 10.8216801756537 10.2023755224390 10.0878599690679 10.729111010374 10.6222155255818 11.0049586447403 10.9520946636745 10.8198630508008 11.1126890589947 11.2283366665285 11.5415858834571 11.0983612970293 11.1991815108361 11.7381134728025 11.3135170618368 10.6455960207192 11.0953565079623 11.0296998478545 0.0829784592186959 0.0808456879500907 0.0841736090886362 0.0873663064695065 0.0816542713413337 0.0865295593898771 0.081920371281369 0.080728581731918 0.0864554391130486 0.0805976029466954 0.0825879809729648 0.0819164313976736 0.0822196899418278 0.0817969507746495 0.0836056782337755 0.0808013768469935 0.0906801307443826 0.0838945291200941 0.0811621684786338 3 3|0 +|/ 19353255 19353849 19353463.222 19353002 19354444 + gene protein_coding_gene FALSE TRUE AT3G52150.1|AT3G52150.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to Plastid-specific 30S ribosomal protein 2, chloroplast precursor (PSRP-2) (GB:P82277); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.127589321674955 -1.53748276145068 0.152730056201058 1 0.464972453816898 21.7704858811871 -0.127589321674955 0.029529741803323
AT1G62670_at 1.97905463420587 2.01654226108013 2.12315829344707 2.25568352758515 2.0047456997202 1.93202836600532 1.92395373499275 2.28837091314455 2.00173208489210 1.89493905418652 2.24726695734026 2.15965274819576 1.96875533528098 2.41506336866558 2.11070189659299 1.90404642811693 2.08364054194817 1.72850858435298 1.57563110330372 0.187991658859092 0.188309102126799 0.191223471763985 0.195655351282454 0.192430093463767 0.194871269808248 0.201028452904789 0.191092641024350 0.197045195534875 0.197150542456647 0.199973058024579 0.187991658859092 0.189407163297588 0.195324763559646 0.194986282516432 0.19209624976774 0.190695073885526 0.197212697466462 0.196697339837266 1 1 - 23208598 23208716 23208661.636 23208438 23210330 - gene protein_coding_gene FALSE TRUE AT1G62670.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.140013660467268 1.53729941873291 0.152774530007776 1 0.464741550750472 4.01609479378387 0.140013660467268 0.068582056755361
AT3G47170_at 2.42216987490679 2.17236789547252 2.25275971209435 2.37266508688087 1.67976688090647 2.29145871988254 2.10683179666466 2.01176545191104 2.13042350043629 2.05557253458531 2.39213904805166 2.32855081601824 2.56367524430325 2.35074002704907 2.75155807580131 2.48712909731527 2.41264386326662 2.54570433090651 2.16902216856157 0.190338888364181 0.194040034575058 0.188185075749300 0.193793906586024 0.188185075749300 0.194872646854864 0.205751338897203 0.193399859523957 0.200462782631399 0.195674839131096 0.19179732735357 0.193193762781904 0.19126679305136 0.191214478078642 0.193307273894256 0.192801301037521 0.191772386534764 0.193989163585833 0.190397675024397 3 3 - 17379657 17380182 17379919.545 17379657 17381479 - gene protein_coding_gene FALSE TRUE AT3G47170.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G07080.1); similar to Transferase [Medicago truncatula] (GB:ABE89145.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.165778503423452 1.53722146158418 0.152793443635425 1 0.464643376094261 4.46240165935660 0.165778503423452 0.117369194716631
AT2G04860_at 3.03792999444678 2.93439470997061 3.02885144216435 2.89082363238175 2.89938247114168 3.34549090965778 2.67020217979713 2.84130203420032 2.71948380294260 2.62743096680353 2.50905639899842 2.61342882185122 2.80081970792058 2.84449769324339 3.11888125810978 2.66312753335146 2.74206710657587 3.06794693701444 2.65400735091805 0.169259780414654 0.164725724897010 0.163042242482639 0.162772333457422 0.166759406885905 0.164404125383925 0.166349532021510 0.165174760225542 0.173567540222176 0.162389647123821 0.171936876575766 0.167796185510279 0.16079898104787 0.165103206836907 0.163499280365801 0.167202700372299 0.169349799361672 0.163818911665499 0.165330639445621 2 2 - 1706972 1707308 1707138 1706784 1708532 - gene protein_coding_gene FALSE TRUE AT2G04860.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21300.1); similar to PPR-repeat containing protein [Glycine max] (GB:ABC47857.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.149092013072214 1.53718629651205 0.152801975899239 1 0.464599092264476 5.68702328289732 0.149092013072214 0.0879109397924798
AT1G61140_at 8.59753566947416 8.7272196452135 9.0621282985187 9.1509472867549 8.8903589295025 8.40291307813852 8.14677301736408 7.93481134728205 8.00802964030733 8.50544329335933 8.44540858342569 8.1521776401559 7.98097510788937 8.13181663562846 7.62549301422008 8.62116254462204 8.37970873604259 8.01598497428888 8.64887479524113 0.165719131629477 0.158456105773621 0.162094791334549 0.157571971571952 0.158185192363917 0.164608810771793 0.163904293326022 0.164414368566661 0.165684459812669 0.166877944823819 0.161866975842283 0.163559822554815 0.159232658510346 0.166401794938456 0.15987962942852 0.159836788511622 0.166529522322314 0.158902897008114 0.158905848566790 1 1|0 -|/ 22538714 22539415 22539063.444 22538391 22544275 - gene protein_coding_gene FALSE TRUE AT1G61140.1 EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ protein binding / zinc ion binding similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G50410.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G11100.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20010.1); similar to Os01g0779400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044433.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD52846.1); similar to H0323C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68165.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.153321819980036 1.53718035731644 0.152803416994535 1 0.464591613019902 16.8923559827827 0.153321819980036 0.095922555419263
AT3G45950_at 1.09857495555653 1.49960224493340 1.36963946398751 1.22488893629453 1.49509408658775 1.4156777300051 1.66544531952073 1.31233442397538 1.83193244505076 2.15218839740344 1.39769278450874 1.59679423346872 1.78213799177588 1.54176971975743 1.58520863443473 1.53173128075247 1.71499095994605 1.90796578027224 1.78243573017994 0.205102847416535 0.207457356215448 0.204737528430832 0.203533822756313 0.201763980066419 0.205363241460356 0.200154753340442 0.204113477479025 0.200758503573553 0.208128539727771 0.202809244362812 0.202290974762458 0.208352646641642 0.201427246027604 0.20183984441773 0.200241562601145 0.200154753340442 0.200154753340442 0.209863904090212 3 3 - 16900450 16900883 16900638 16900446 16901603 - gene protein_coding_gene FALSE TRUE AT3G45950.1 splicing factor-related similar to SMP1 (swellmap 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G65660.1); similar to mRNA processing-related protein [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_570464.1); similar to step II splicing factor SLU7 [Gallus gallus] (GB:NP_001006146.1); similar to Os08g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060905.1); contains domain Retrovirus zinc finger-like domains (SSF57756); contains domain STEP II SPLICING FACTOR SLU7 (PTHR12942); contains domain no description (G3D.4.10.60.10) -0.153781641437315 -1.53709284889517 0.152824651536736 1 0.464481415486724 3.16239311877057 -0.153781641437315 0.0967822599087297
AT1G04810_at 7.13989318908177 7.41490098500726 7.89471556994024 7.75632977249478 7.5765928726529 7.47225778107439 7.33441968616796 7.09967101741844 7.28765402200967 7.2416444995702 7.14569936909802 7.54718446947402 7.10976135240184 6.76035714085917 7.25415256215333 6.99545515023934 7.19684154413193 6.83698200741768 7.22935783069963 0.204747356470657 0.204904387714111 0.204913903828575 0.202356722985800 0.205999322869339 0.209018584397046 0.200281893600788 0.204229318134286 0.215392097448070 0.205047056752353 0.205400137348172 0.201242817551548 0.209909172499953 0.212759946367358 0.206014303630328 0.204818217735579 0.211770858477506 0.212226126443013 0.205014152182501 1 1 + 1354556 1355209 1354987.455 1350179 1355441 + gene protein_coding_gene FALSE TRUE AT1G04810.1 26S proteasome regulatory subunit, putative similar to 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT2G32730.1); similar to Armadillo-like helical [Medicago truncatula] (GB:ABE85726.1); similar to B0402A04.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67136.1); similar to 26S proteasome subunit RPN2A [synthetic construct] (GB:AAP82172.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) 0.140335764166899 1.53704973189926 0.152835115125474 1 0.464427120563833 14.6404424343456 0.140335764166899 0.0693888059468644
AT1G22240_at 0.75090996926675 0.773221170283539 1.28501667907188 1.06179362054308 0.892743910769088 0.896641577979719 0.976335435791248 1.26507454484484 0.898635411631699 1.56056432357108 0.49174693735488 0.981877358067608 1.25502483905773 0.793186996408218 1.13194566598381 1.21910275685447 0.95181774933497 1.05003271273207 1.59864384359612 0.182560001453131 0.194916688951354 0.186448255442355 0.190133669021480 0.183788063637448 0.183438697640530 0.186485140402698 0.206225203173179 0.190153441926632 0.191514654299762 0.185505650136187 0.186549495006495 0.18357293053992 0.200338669181301 0.189188227113164 0.185688482878533 0.193675688951860 0.19376619963203 0.197457567055791 1 1 + 7854143 7854872 7854582.818 7853073 7854952 + gene protein_coding_gene FALSE TRUE AT1G22240.1 APUM8 (ARABIDOPSIS PUMILIO 8); RNA binding similar to APUM7 (ARABIDOPSIS PUMILIO 7), RNA binding [Arabidopsis thaliana] (TAIR:AT1G78160.1); similar to Os03g0191700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049234.1); similar to Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] (GB:CAL57619.1); similar to Os12g0493900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066803.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.137804491123866 -1.53704104614935 0.152837223049718 1 0.464416183177168 2.15619531518903 -0.137804491123866 0.063280245717338
AT4G03340_at 1.02545477576107 0.667267215784489 1.33216703031838 1.25644646829958 1.14748880784313 0.869370258144171 0.958302378057199 1.02036374277934 2.18189021523012 1.09475519767168 1.97812776022152 1.84252935972771 1.61790309295495 1.68576775644469 1.80346267421557 1.40631508100864 1.33811512882811 1.33602774772074 1.43024967129750 0.190317583221943 0.199828576391547 0.195602535208112 0.196403571414517 0.193987433625848 0.196125507370728 0.194192023601977 0.190317583221943 0.201682773545170 0.191678997237905 0.19272571470522 0.192190409758934 0.195309901350986 0.207300931450978 0.190317583221943 0.190317583221943 0.199078705826338 0.193370593406413 0.193946110234838 4 0|4 /|- 1467894 1468340 1468098.9 1467726 1470079 - gene protein_coding_gene FALSE TRUE AT4G03340.1 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT1G03520.1); similar to Os08g0143500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060977.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) 0.145293580064799 1.53703555497737 0.152838555702375 1 0.464409268529347 2.63210563622676 0.145293580064799 0.0802857029158032
AT3G21770_at 1.37196701373997 0.890820344929214 0.686025474849703 0.590431186278422 1.06707332904681 1.23901529390489 0.806641851219035 1.00455678970456 1.03937062159951 1.13847800152822 1.22181807954638 0.6657524902889 0.969487424660574 1.03675755088647 0.911438194705191 0.368599988141266 1.49466472240268 0.718452899069864 1.14436462971705 0.193610347917022 0.197461580990065 0.205411596149629 0.194437404935511 0.199125483945076 0.195090665162380 0.193610347917022 0.196515908757324 0.199586595771841 0.199268615674637 0.201292040889180 0.194764118693819 0.220480564446974 0.193913257309920 0.217396908211602 0.200061330640069 0.201718087011002 0.204920305672671 0.202264213566193 3 3 + 7674081 7674637 7674353.545 7673283 7674846 + gene protein_coding_gene FALSE TRUE AT3G21770.1 peroxidase 30 (PER30) (P30) (PRXR9) Identical to Peroxidase 30 precursor (EC 1.11.1.7) (Atperox P30) (PRXR9) (ATP7a) (PER30) [Arabidopsis Thaliana] (GB:Q9LSY7;GB:Q43737;GB:Q96521); similar to RCI3 (RARE COLD INDUCIBLE GENE 3), peroxidase [Arabidopsis thaliana] (TAIR:AT1G05260.1); similar to CBRCI35 [Capsella bursa-pastoris] (GB:AAT72298.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.153446588890251 -1.53661560587092 0.152940503059456 1 0.463880500882633 1.97245432862287 -0.153446588890251 0.0962555408484476
AT1G61620_at 8.62171521646797 8.46263277257485 8.66341978258 8.66752047758125 8.7799418292928 8.63393013736903 8.40341918080002 8.33126346306066 7.71008781215385 8.18581785600993 7.94746192216482 8.18362633548307 8.12463690241149 7.86497458609111 8.0477364013894 8.07872761432322 8.31462902018775 8.04398700978892 8.24672825602309 0.133701631256241 0.129070639007636 0.136211257206085 0.132125614472788 0.135381590577304 0.135174625597394 0.135379431525651 0.133274821966840 0.137194872794293 0.133227776256576 0.132477201720917 0.128768147837790 0.13093332736708 0.139771221882321 0.133960044313896 0.130276816584686 0.143012060002790 0.142500701117527 0.132966575430316 1 1 + 22742290 22742835 22742551 22741208 22743095 + gene protein_coding_gene FALSE TRUE AT1G61620.1 protein binding / zinc ion binding similar to Os03g0279900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049735.1); similar to hypothetical protein DDBDRAFT_0216662 [Dictyostelium discoideum AX4] (GB:XP_646037.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.12981161553212 1.53659081284819 0.152946523689392 1 0.463849286179663 16.6321139151536 0.12981161553212 0.0394055392979592
AT1G73160_at 1.88201297766557 1.94823054485399 2.47762928412212 2.59617816378881 1.37133519018659 2.44837133663975 1.65074086766512 1.82808737980629 1.65761122472486 1.99087403102316 1.83406737019673 1.81874716087133 1.78873905072076 1.91494268425656 2.20458818942554 1.71330412790041 2.19616726589298 2.16536713571519 2.10337830677074 0.225825138799172 0.226461612488576 0.217281583889127 0.229684216976114 0.222760298880695 0.225287548778615 0.213893804016076 0.219714050313783 0.222856060289363 0.216212618786942 0.218175242904155 0.213893804016076 0.216457358908406 0.222672245162778 0.216891542815986 0.217043317074993 0.215590418937648 0.22638499327507 0.219198429748619 1 1 + 27511057 27511563 27511332.364 27510195 27511655 + gene protein_coding_gene FALSE TRUE AT1G73160.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G19460.1); similar to hypothetical protein Tc00.1047053510719.220 [Trypanosoma cruzi strain CL Brener] (GB:XP_819200.1); similar to Os01g0653200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043742.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.216656535068046 1.53637788385637 0.152998238914518 1 0.463581218812124 3.96121233173871 0.216656535068046 0.190352047518714
AT2G31590_at 2.73406633238450 3.17213057838551 3.09413786133304 3.26252045847489 2.94497981476248 3.29749387329574 3.34349181144904 2.94090886654536 2.88921179504425 3.41951098893377 3.04713690795760 3.54989456123303 3.36513357340716 3.41138281555018 3.53245790619474 3.43176882898859 4.06832292994377 3.48962856667803 3.44276174453121 0.243947151358084 0.256256613280705 0.239376980683948 0.243443994686621 0.24581270557917 0.238363323473577 0.248819691371943 0.238363323473577 0.248104818128760 0.238363323473577 0.238809606493471 0.244112117872044 0.245493724899559 0.238363323473577 0.238363323473577 0.247802192666796 0.248352848002555 0.245577814195910 0.248737857000276 2 2 - 13453908 13454878 13454324.571 13453906 13455210 - gene protein_coding_gene FALSE TRUE AT2G31590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04730.1) 0.169302261591579 1.53636936620104 0.153000307959695 1 0.463570495966729 6.46744650161909 0.169302261591579 0.123172156513264
AT3G08740_at 9.93626281449108 10.1514767999127 9.71796453340916 9.8208299154619 10.0205909677423 9.85803166896133 10.5286009575268 10.5603805483131 10.2935361551140 10.2895283551475 10.4326596922130 10.7458862562059 10.0322702918717 10.1855897448550 11.2044278138016 10.2236955543040 10.0616437855357 10.1300809237821 10.0265775889315 0.101570207156983 0.0936609653197624 0.105306469338273 0.0979382531598025 0.094254732436879 0.0983875079342918 0.0937585898357173 0.0937523978960038 0.0983265644447024 0.0969605947403438 0.0936609653197624 0.096065244382685 0.0939467114426799 0.100673802441487 0.0959778392431947 0.095465037165476 0.102602908106831 0.0951166926731845 0.0995114722096122 3 0|3 /|- 2654798 2655911 2655277.333 2654632 2656245 - gene protein_coding_gene FALSE TRUE AT3G08740.1 elongation factor P (EF-P) family protein similar to elongation factor P (EF-P) family protein [Arabidopsis thaliana] (TAIR:AT4G26310.1); similar to elongation factor P [Synechococcus elongatus PCC 6301] (GB:YP_172255.1); similar to Os11g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065588.1); similar to Os12g0115900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065991.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Elongation factor, KOW-like; (InterPro:IPR013185); contains InterPro domain Elongation factor P/YeiP; (InterPro:IPR001059); contains InterPro domain Elongation factor P; (InterPro:IPR011768); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.133004141955246 -1.53635925101904 0.153002765095666 1 0.463557762048111 20.3643901711700 -0.133004141955246 0.0502555672989004
AT4G35200_at 0.505527115296516 0.72851562824182 1.2463668108794 0.313179602839973 0.871284544294997 1.22708083404213 0.960613334630597 0.265149147917263 0.455312962497293 0.666735209014639 0.938136931990756 0.752395993980004 0.821516169007265 0.886145101462346 0.935527406089215 0.707156061464193 0.62592042650181 1.28823683658702 0.974111489329945 0.186272165290572 0.187359079078855 0.189355666854436 0.190825053561343 0.186272165290572 0.198563140682936 0.18848412973995 0.190996481788112 0.198958864701693 0.195320153308828 0.193955559708445 0.196187902578338 0.189274024943698 0.192434605322456 0.195610075637825 0.191761463096615 0.195721455429347 0.193746686757280 0.195105986202704 4 4 - 16749148 16749653 16749406.636 16749147 16749908 - gene protein_coding_gene FALSE TRUE AT4G35200.1 carrier similar to carrier [Arabidopsis thaliana] (TAIR:AT4G35210.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320); contains InterPro domain Serum albumin; (InterPro:IPR000264) 0.235093060215305 1.53622388283977 0.153035651441917 1 0.463387353113967 1.54876425368415 0.235093060215305 0.214114408456643
AT3G23730_at 2.18375814852978 2.75634836096346 1.58298586907427 1.93928515423869 2.47579493832618 2.26088636571122 1.29297058044424 1.62724390504469 2.43262039001207 1.58365083873335 3.53644389086096 2.05579517448967 1.33724664365654 1.97275709413875 2.06551828720832 2.28138246843409 1.38909370424769 1.94685148538972 1.43878855344717 0.181465299944285 0.179826535656515 0.175645393001067 0.178734697752320 0.182117385504637 0.189286776386660 0.175644064266243 0.187610220412191 0.17849400108874 0.181269707158924 0.204721016544254 0.180819786830466 0.190838922652029 0.177991051239551 0.186320836348276 0.179201084529858 0.189122144520492 0.184922836925494 0.179350294641845 3 3|0 +|/ 8550588 8551212 8550910.9 8550117 8551342 + gene protein_coding_gene FALSE TRUE AT3G23730.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 16 precursor (EC 2.4.1.207) (At-XTH16) (XTH-16) (XTH16) [Arabidopsis Thaliana] (GB:Q8LG58;GB:Q9LK45); similar to XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT4G14130.1); similar to Brassinosteroid-regulated protein BRU1 precursor (GB:P35694); similar to xyloglucan endotransglycosylase 3 [Litchi chinensis] (GB:ABK30789.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.177220332957199 1.53601688497221 0.153085951372677 1 0.463126790563367 3.96065384243361 0.177220332957199 0.135462464475704
AT1G27320_at 7.93005983247908 8.12581807074074 7.75675185716662 8.13598524109096 8.56603512204057 8.38230485389069 8.07092231255572 8.2273965794476 8.30975546022862 8.11407057208582 8.51491832848138 8.16453644380719 8.61495347910113 8.39537440458254 7.91362561587472 8.74689670893258 8.59773323690635 8.11480951442759 8.20582653263992 0.138590819522064 0.132567653709374 0.155565340352355 0.135654905569486 0.131631646638798 0.142549131701197 0.129760481710623 0.132810643889428 0.139660313528745 0.129076581108044 0.129353140281436 0.137394805755403 0.130827416173723 0.134672503975942 0.139456258876618 0.130183073104918 0.143958381082027 0.137561668442963 0.135938399282925 1 1 + 9491326 9491980 9491606.545 9487767 9492280 + gene protein_coding_gene FALSE TRUE AT1G27320.1 AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis thaliana] (TAIR:AT2G01830.1); similar to AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) [Arabidopsis thaliana] (TAIR:AT5G35750.1); similar to histidine kinase 1 [Lupinus albus] (GB:ABJ74170.1); similar to histidine kinase SHK278 [Striga asiatica] (GB:ABD79028.1); similar to histidine kinase 1 [Medicago sativa] (GB:ABJ74169.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain CHASE; (InterPro:IPR006189); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.147345923968744 1.53514733695056 0.153297406047160 1 0.462032465301643 16.4457793110927 0.147345923968744 0.0848462600470271
AT1G54560_at 1.2210477844639 1.48998051707843 1.74277857138671 2.09279934678684 1.48467837989662 1.75581970846952 1.66193300473548 1.14446726334601 1.90789464527235 1.38406045159612 1.58792232403861 1.90091339661783 1.33539035207291 1.27182056005356 1.47261057122542 1.53191017499967 2.11934217378523 1.94730693895614 1.78623363259280 0.215550397815204 0.218386038153652 0.226399360876842 0.222163557156127 0.217152069874564 0.222026440638090 0.221037409273295 0.219943865404781 0.230099654114934 0.226872917579401 0.225133426366509 0.215550397815204 0.223556807826576 0.220001530067858 0.228404814054815 0.217070287509895 0.22154043228 0.216667920404533 0.229438280114968 1 0|1 /|- 20375318 20376290 20375763.5 20375316 20383412 - gene protein_coding_gene FALSE TRUE AT1G54560.1 XIE (Myosin-like protein XIE); motor/ protein binding member of Myosin-like proteins similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to MYA1 (ARABIDOPSIS MYOSIN), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G17580.1); similar to unconventional myosin heavy chain [Zea mays] (GB:AAD17931.2); similar to unconventional myosin [Helianthus annuus] (GB:AAB71529.1); similar to myosin XI [Nicotiana tabacum] (GB:BAD72949.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.171417172105275 1.53514396309696 0.153298226986612 1 0.462028220050217 3.24350389099832 0.171417172105275 0.126711916654386
AT3G10360_at 7.34645995597446 7.4021591443257 7.29581821860051 7.12911748657698 7.67147829121424 7.56993557566409 7.93925134720794 7.05256221076716 6.53634524855721 6.99159327764029 7.27037204283697 7.67238600782819 7.02500669496056 6.98671923882337 7.14420111811079 7.16919370243006 7.13415606425364 6.73798261444797 6.69111492590347 0.220204325859866 0.220239078932663 0.223559127451107 0.227495504578779 0.236431123853049 0.225391162101684 0.233816286441205 0.219580848872516 0.251757726507443 0.224605218774078 0.227625561461717 0.233020369366240 0.218457762631513 0.232314233285252 0.233419398065705 0.218457762631513 0.223703166269203 0.234550217240796 0.222258679407357 3 3 - 3211303 3211959 3211561.875 3210889 3215149 - gene protein_coding_gene FALSE TRUE AT3G10360.1 APUM4 (ARABIDOPSIS PUMILIO 4); RNA binding similar to APUM1 (ARABIDOPSIS PUMILIO 1), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29200.1); similar to APUM3 (ARABIDOPSIS PUMILIO 3), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29140.1); similar to APUM2 (ARABIDOPSIS PUMILIO 2), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29190.1); similar to putative pumilio domain-containing protein PPD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89558.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABE87830.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABD33134.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Nucleic acid binding NABP; (InterPro:IPR012940); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.192148464936465 1.53472115927214 0.153401135500635 1 0.461496259866824 14.3669411135389 0.192148464936465 0.157415080745779
AT2G38320_at 1.52556181179294 1.56788777543543 1.73599590782758 1.55590031361171 1.65611106008704 1.70808565521410 1.17267433140414 1.54101453747577 1.66918461832525 1.84524899726414 2.00331480754252 2.20890538387465 1.67079496632275 1.68141314174195 2.25806584402886 1.71667132848454 2.09512784174529 1.99154228021794 2.13482442695825 0.234083604392421 0.228370582309424 0.229888028762751 0.233205605303335 0.232139144802927 0.242513837602873 0.229055986758605 0.228370582309424 0.235066217016982 0.231581511438962 0.228370582309424 0.2309876127886 0.244550743568955 0.232080016679152 0.228370582309424 0.228530233774706 0.244285729160446 0.229014624265164 0.232325287675821 2 2|0 +|/ 16064041 16064923 16064447.375 16062367 16065058 + gene protein_coding_gene FALSE TRUE AT2G38320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01620.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95402.1); similar to Os03g0817500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051701.1); similar to Os11g0107000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065543.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.141191027610152 1.53447758479239 0.153460447630805 1 0.461189841927119 3.47606165581977 0.141191027610152 0.0718962002487497
AT1G58250_at 5.69082888322777 6.45394427369575 5.92712650568558 5.92416416928147 6.63202744874164 5.8228776944575 6.67394313489242 6.18889612260288 6.49980863780638 6.41029775603169 6.35697075635084 6.83499323154106 5.61355926848566 6.33271028009556 6.06918281598574 6.32435620884344 5.7847311230493 6.19853685814717 6.52112290078285 0.231828231725158 0.225643241569541 0.222848019597984 0.221102510092601 0.217276429131464 0.223051517644811 0.218406448820394 0.227899255505425 0.252991853546099 0.229167107099664 0.216942695177331 0.216942695177331 0.223561248406903 0.217377103629761 0.232458345077021 0.218241469107438 0.232417250036873 0.220770565292977 0.225872426952779 1 1 - 21590997 21591807 21591314.727 21590707 21605286 - gene protein_coding_gene FALSE TRUE AT1G58250.1 SAB (SABRE) SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49680.2); similar to aberrant pollen transmission 1 [Zea mays] (GB:AAY85656.1); similar to SABRE, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98216.1); similar to aberrant pollen transmission 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95966.1); contains domain FAMILY NOT NAMED (PTHR15678); contains domain SUBFAMILY NOT NAMED (PTHR15678:SF10) -0.231525256395556 -1.53414290056885 0.153541978099495 1 0.460768856120822 12.4974542787495 -0.231525256395556 0.209985116916456
AT1G25250_at 1.34010470332540 1.43662098705526 0.856955624545429 1.07653947867476 1.40567584443941 1.31050929528415 1.07061874065453 1.65983533372649 1.42669493975807 1.51520557665884 1.57471425762071 1.28764835328492 1.55914891269648 1.31205799529019 1.50418289934536 1.32542810399273 1.20213071504715 1.18137815517431 1.49057272100449 0.23603758361626 0.230394842517514 0.238279934079503 0.236892674386917 0.245483626384464 0.241697253367438 0.230394842517514 0.23396776090062 0.238719975197604 0.241732294406932 0.237104972546363 0.234087265627923 0.246043838210521 0.234085162056289 0.239228735988733 0.233317761178203 0.238101983652842 0.238456112297847 0.250162346839869 1 1 + 8850954 8851468 8851140.545 8849536 8851599 + gene protein_coding_gene FALSE TRUE AT1G25250.1 ATIDD16 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 16); nucleic acid binding / transcription factor/ zinc ion binding similar to ATIDD14 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 14), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G68130.1); similar to Os09g0449400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063321.1); similar to putative zinc finger protein ID1 [Oryza sativa (japonica cultivar-group)] (GB:BAD37964.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.161764892769234 -1.53393417123711 0.153592844463665 1 0.46050633242404 2.69252112756166 -0.161764892769234 0.111316708323509
AT1G71040_at 10.8294081269174 11.0453987633065 11.3381022303339 11.3901280596837 11.0352058057876 10.8094011291818 10.6546704635155 10.5246652572363 10.3034257493069 10.2717810559779 10.2183789996268 9.9273471349206 10.2381296707494 10.4087090651487 9.3821744505414 10.1315201725149 10.4025484965199 10.0740606561663 10.0415963128602 0.105414860397108 0.101326560441431 0.101075655967845 0.103797385667403 0.102306100255165 0.105955259344523 0.101075655967845 0.103127113750935 0.115630396034801 0.101179960113412 0.104222532862021 0.103773160255134 0.105202425046967 0.103259301755017 0.112745925200822 0.102030960591952 0.108421591708861 0.111389173229750 0.102419688240906 1 1 - 26800866 26801538 26801210.364 26800628 26803984 - gene protein_coding_gene FALSE TRUE AT1G71040.1 multi-copper oxidase type I family protein similar to multi-copper oxidase type I family protein [Arabidopsis thaliana] (TAIR:AT1G23010.1); similar to Os01g0126100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041895.1); similar to putative spore coat protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB21194.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.135965597447337 1.53392350105729 0.153595445129550 1 0.460492912881491 21.1051022895729 0.135965597447337 0.0592564407756803
AT3G59490_at 5.18981242959017 5.4123481504023 5.69527336936724 5.04374148265622 5.69275835784407 5.65146122874702 5.33999875111126 5.32295981315558 3.73549438600679 4.35961048537017 4.43374390284379 4.14332192167352 3.97506526604125 4.44346604692536 4.19203425144529 4.62030591209206 4.73136079615895 4.0559250039862 4.49189609541013 0.218336392983449 0.219101432795346 0.220035716667710 0.221827575728918 0.220310237452517 0.228195449106274 0.220563779420925 0.221173083968994 0.238558711341809 0.225882422227919 0.224085538613023 0.225710902448020 0.221121286530506 0.222788101244831 0.217761368240417 0.219351446301865 0.221616637250485 0.222556524737443 0.219564980981802 3 3|0 -|/ 21996002 21996731 21996351.6 21995608 21997328 - gene protein_coding_gene FALSE TRUE AT3G59490.1 similar to Os09g0515300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063666.1) 0.166632361152791 1.5335485741451 0.153686851137856 1 0.460021415710902 9.67857913614665 0.166632361152791 0.119396647625377
AT3G03090_at 4.88467163503967 5.48186004451016 4.51480966140804 4.13893010896006 5.63519788011568 4.63137458712347 5.72533893694901 5.42455802949396 3.44975487423993 4.08276483562489 4.43915209356813 4.41637511585207 4.55189769794004 4.49785600506071 4.50146955539042 4.02309785314869 3.74089247903838 3.32799825110982 4.5119116913085 0.228643238281557 0.229333490099593 0.236584226696149 0.230102775729016 0.230457922449073 0.246024165935507 0.235493068801499 0.230541641957192 0.23966688907974 0.228733040704735 0.230114052605537 0.228643238281557 0.228643238281557 0.238841942332938 0.228643238281557 0.231819901248040 0.242847942245655 0.233407773324033 0.230133432005151 3 0|3 /|- 700810 701766 701182.5 700463 704776 - gene protein_coding_gene FALSE TRUE AT3G03090.1 sugar transporter family protein Encodes a vacuolar membrane-localized glucose transporter that can also transport fructose. Mutations in these gene have effects on seed germination and time to flowering. Identical to D-xylose-proton symporter-like 1 [Arabidopsis Thaliana] (GB:Q8L6Z8;GB:Q9M9M8); similar to sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT5G17010.3); similar to Os10g0579200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065505.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE91902.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.238248593882815 -1.53351091104652 0.153696035892013 1 0.459974055604168 9.15566903467315 -0.238248593882815 0.218628374582496
AT3G57660_at 3.05571857201191 3.20263099979247 2.99210060643276 2.92539248381588 2.58748645785607 2.49497547539933 3.16618363381146 2.96448610221369 2.22278818940437 2.44897353864949 2.19521864878129 2.55238804554497 2.54813532782906 2.45745833285061 2.64078320421785 2.44425088899924 2.48212694753753 2.72052179841507 2.59297504038308 0.209108702592157 0.211490391500379 0.213041881449285 0.211119711597644 0.214454185791869 0.211392072368125 0.212244570565956 0.20723429468173 0.208546035895803 0.216508632223307 0.213358912921693 0.213315132912535 0.214561267853689 0.209058004897785 0.207978424663535 0.20723429468173 0.212404258704215 0.208400286029802 0.207903541298756 3 3 + 21373207 21373750 21373486.182 21364723 21373791 + gene protein_coding_gene FALSE TRUE AT3G57660.1 NRPA1 (nuclear RNA polymerase A 1); DNA binding / DNA-directed RNA polymerase Encodes a subunit of RNA polymerase I (aka RNA polymerase A). similar to NRPC1 (nuclear RNA polymerase C 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G60040.1); similar to RNA polymerase Rpb1, domain 5 [Medicago truncatula] (GB:ABE80522.1); similar to RNA polymerase I, large subunit (ISS) [Ostreococcus tauri] (GB:CAL56856.1); similar to RNA polymerase I largest subunit [Candida albicans SC5314] (GB:XP_710761.1); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro domain RNA polymerase Rpb1, domain 5; (InterPro:IPR007081); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) -0.131867297310868 -1.53346618475578 0.153706943738194 1 0.459917814693037 5.38696645245883 -0.131867297310868 0.047479278063695
AT4G18770_at 1.55703527535421 1.89709671323582 1.64780469482116 1.23377889876337 1.25803570000006 1.7080587829603 1.47667035561999 1.50641120130001 1.44197443771892 1.40212429843291 1.14547240935244 1.10191564002813 1.2158884205995 1.14972995619516 1.09042455886419 1.11237920169375 1.19535048524572 1.34100237862970 1.22704541497906 0.225478818758840 0.219569043917148 0.227414112674081 0.222172094687573 0.219467931435271 0.223642522406874 0.219467931435271 0.223756883481661 0.224166007648875 0.23095829331111 0.224087756493748 0.225359198704728 0.236893124754275 0.227007616179434 0.219467931435271 0.219467931435271 0.226521385910423 0.224998018178811 0.228329335887343 4 4 + 10311931 10312544 10312266.091 10311041 10313115 + gene protein_coding_gene FALSE TRUE AT4G18770.1 MYB98 (myb domain protein 98); DNA binding / transcription factor MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects. Identical to Transcription factor MYB98 (Myb-related protein 98) (AtMYB98) (MYB98) [Arabidopsis Thaliana] (GB:Q9S7L2;GB:Q3HSE6); similar to MYB118 (myb domain protein 118), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G27785.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67643.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.167705768146087 -1.53313125912464 0.153788646740128 1 0.459496695680423 2.79864566860838 -0.167705768146087 0.121195660031204
AT4G11230_at 0.345227178573500 0.227470611510647 0.64819220668066 0.763888294106787 0.270765486308492 0.605152823811788 0.414747465761745 0.382094649019987 0.269700570928874 0.354777154833957 0.559466000152673 0.277998802073870 0.403534154043115 0.322845860326597 0.487677056769458 0.330865429579503 0.649065254501229 0.392381837527604 0.520147220608359 0.184415194199730 0.175868687777645 0.180084168968541 0.176154566415562 0.175100618369261 0.181556871231366 0.175100618369261 0.178194901846585 0.182807465006383 0.184216989091180 0.184129391216682 0.179261895052966 0.175100618369261 0.182216606840385 0.179599446719917 0.178942629404654 0.178772278817959 0.179603635858659 0.183550340093762 4 4 - 6840801 6841558 6841214.364 6840487 6845587 - gene protein_coding_gene FALSE TRUE AT4G11230.1 respiratory burst oxidase, putative / NADPH oxidase, putative similar to RHD2 (ROOT HAIR DEFECTIVE 2) [Arabidopsis thaliana] (TAIR:AT5G51060.1); similar to ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F), NAD(P)H oxidase [Arabidopsis thaliana] (TAIR:AT1G64060.1); similar to respiratory burst oxidase protein E (RbohE) / NADPH oxidase [Arabidopsis thaliana] (TAIR:AT1G19230.1); similar to respiratory burst oxidase homolog [Solanum tuberosum] (GB:BAB70750.1); similar to NADPH oxidase [Nicotiana tabacum] (GB:CAC87256.1); similar to respiratory burst oxidase homolog [Nicotiana benthamiana] (GB:BAC56864.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623) 0.138026188545911 1.53278816475919 0.153872381523217 1 0.459065364259841 0.861952813552777 0.138026188545911 0.0647819430145105
AT2G29800_at 1.84747537087773 1.86642332502279 2.16479109766778 2.00421765165584 2.06192680635495 2.00189901638716 1.66029534682461 1.96171092140895 2.44760556764447 2.39923371719939 1.86187287908384 1.79204276715343 1.77572897923110 2.05069582104844 1.72607405755196 2.02431629610341 1.92711755242381 2.12765786621462 2.37483234747939 0.194039242809626 0.188953074588314 0.185157213162809 0.185157213162809 0.187453651676374 0.185157213162809 0.188475095973848 0.185157213162809 0.199461748995710 0.190416012158077 0.195779937521962 0.188859486783654 0.188132808061682 0.187524285444090 0.190814935677091 0.185157213162809 0.188668586677560 0.187352092513061 0.190029143611565 2 2 - 12730448 12731008 12730709.545 12730435 12731679 - gene protein_coding_gene FALSE TRUE AT2G29800.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G29600.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.13615159905342 -1.53242970455517 0.153959908706186 1 0.458614778535554 4.10504851942118 -0.13615159905342 0.060096964142244
AT3G58560_at 8.54751138501832 8.7050476680727 8.44866968252873 8.42643818819528 8.75436497091864 8.37508509093288 8.61700321290193 8.64305185590962 8.2687337404526 7.75796965538877 7.81630091446062 7.86686652843358 7.83311049159071 7.90878796627541 7.65643418595434 7.75540787142697 7.67964301664801 7.96620850416913 7.86775463725578 0.139671127631770 0.138928126482492 0.144993094189157 0.143934174338209 0.134898051769423 0.147583992420818 0.139765742255751 0.140278932340699 0.142493770561877 0.139903215692735 0.147371101184609 0.138544281358713 0.135747751707287 0.143312325041673 0.147050222332068 0.139823756094297 0.145699660229772 0.141116455352191 0.138256676215210 3 0|3 /|- 21661866 21662440 21662165.5 21661573 21665177 - gene protein_coding_gene FALSE TRUE AT3G58560.1 endonuclease/exonuclease/phosphatase family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT3G58580.1); similar to Endonuclease/Exonuclease/phosphatase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94166.1); similar to Os10g0412100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064587.1); similar to Os03g0166800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049077.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.140744228413813 -1.53237211258219 0.153973975278966 1 0.458542391259975 16.4522286464275 -0.140744228413813 0.0713194527780196
AT1G09840_at 7.53670133023211 7.4045683573635 7.30441865437559 7.2534253634518 7.54819536578076 7.09202125101084 7.49790523405466 7.69801750095277 7.0394956838256 7.0883021030321 8.02704274137633 7.49589430866236 7.47584195322152 7.58328372778503 7.9077273286323 7.77449295345283 7.50457530083856 7.57477999729908 7.27469653632198 0.162860047372755 0.164868575884982 0.161301986418662 0.163470270819369 0.164139680355265 0.162682493883228 0.166635343305485 0.158325145338084 0.176551047657709 0.164370789327133 0.165793192041720 0.160517489445720 0.168223548914566 0.167647382156801 0.160499491695101 0.158588687799116 0.17332370812376 0.167577716416125 0.166459063225839 1 1|0 -|/ 3196122 3197852 3196956.7 3195826 3200293 - gene protein_coding_gene FALSE TRUE AT1G09840.1|AT1G09840.2|AT1G09840.3|AT1G09840.4|AT1G09840.5|AT1G09840.6 shaggy-related protein kinase kappa / ASK-kappa (ASK10)|protein kinase Identical to Shaggy-related protein kinase kappa (EC 2.7.11.1) (ASK-kappa) (AtK-1) (ASK10) [Arabidopsis Thaliana] (GB:Q39019;GB:O04506;GB:Q96244); similar to shaggy-related protein kinase kappa, putative / ASK-kappa, putative [Arabidopsis thaliana] (TAIR:AT1G57870.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91930.1); similar to GSK-3-like protein MsK4 [Medicago sativa] (GB:AAN63591.1); similar to putative salt-inducible protein kinase [Zea mays] (GB:AAU43771.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.149503533759627 1.53236382171586 0.153976000376488 1 0.458531970618516 14.8179664138036 0.149503533759627 0.0896214634465674
AT4G19740_at 1.36605130345226 1.24617603609068 1.75919205614161 1.38949145682922 1.51436027666047 1.28598143379657 1.15045632630852 1.08374129932212 1.54159665271172 1.46829151331441 1.27325005805911 1.39922378154949 1.79756740127523 1.81481576794509 1.15751876750360 1.30669641507668 1.52832391140765 1.56859183740882 1.39442128278101 0.190339337806175 0.188756332895139 0.200002368689632 0.189313335370401 0.194948217407598 0.196007567313236 0.188756332895139 0.188756332895139 0.194882926922171 0.198635265984945 0.192976782868481 0.188756332895139 0.193149948334033 0.192646132252290 0.192736830043807 0.189592650270622 0.192076151235860 0.198195336899273 0.193174689470295 4 4 - 10739588 10740212 10739949.364 10739577 10740630 - gene protein_coding_gene FALSE TRUE AT4G19740.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 18 protein [Arabidopsis thaliana] (TAIR:AT4G19720.1); similar to chitinase, class V [Nicotiana tabacum] (GB:CAA54374.1); contains InterPro domain Chitinase II; (InterPro:IPR011583); contains InterPro domain Glycoside hydrolase, family 18; (InterPro:IPR001223) 0.144147703744700 1.53208152750468 0.154044966344972 1 0.458177180743694 2.82385709464048 0.144147703744700 0.0788598546082426
AT3G15280_at 1.43774757385019 0.983947756056533 1.77624509114816 1.41063642008059 1.60366040884806 1.56877471749058 1.64045596157674 1.51376166203785 2.03436264942273 1.50397014144523 1.70909662112927 1.57517354619798 1.85426310798151 1.84283560171799 1.72655409609266 1.72335637772692 1.84087129958175 2.13069097926464 1.50874902234567 0.211792514045635 0.211159613421665 0.215612638684155 0.212455391026994 0.212138641630379 0.211159613421665 0.214832065914750 0.213187698632618 0.220310640029015 0.215257595701047 0.213592785088252 0.215311297300848 0.218077600485984 0.220908045204618 0.224377973758980 0.218650609687093 0.219691667891501 0.211159613421665 0.221115517502419 3 3|0 -|/ 5144168 5144615 5144406.5 5143975 5144700 - gene protein_coding_gene FALSE TRUE AT3G15280.1 unknown protein 0.156922760159283 1.53177791122974 0.154119171313779 1 0.457795637933022 3.23326160294415 0.156922760159283 0.103380780872279
AT3G14600_at 9.35424018653671 9.54814057169981 8.80484561343811 8.68532733278704 9.4626683474214 9.09787266828059 8.9490686186776 9.15866600033694 8.8508146828988 8.91772433538783 9.33553260754396 9.37581238548328 8.89553140291196 8.72245231127522 9.46461716803586 8.62659628751874 8.45669462044461 8.32519456164659 9.08856040671698 0.144143127935252 0.141503078472598 0.145680221305086 0.142498034202086 0.142946745109304 0.149346416388771 0.141508617081236 0.142373936000425 0.144764893248587 0.146609356875845 0.140486976568289 0.141121061324287 0.137402352059738 0.152867489995824 0.145645436780832 0.140433987301778 0.163254452174589 0.150957708806008 0.141176168271419 3 0|3 /|+ 4911266 4911847 4911571.4 4910704 4912180 + gene protein_coding_gene FALSE TRUE AT3G14600.1 60S ribosomal protein L18A (RPL18aC) Identical to 60S ribosomal protein L18a-3 (RPL18AC) [Arabidopsis Thaliana] (GB:Q9LUD4;GB:Q8L9M5); similar to 60S ribosomal protein L18A (RPL18aB) [Arabidopsis thaliana] (TAIR:AT2G34480.1); similar to unknown [Solanum tuberosum] (GB:ABA46783.1); contains InterPro domain Ribosomal L18ae protein; (InterPro:IPR002670) -0.145956455362330 -1.53122095485113 0.154255374174523 1 0.457095853241225 18.0589388639516 -0.145956455362330 0.0827933968530313
AT2G05890_at 1.65930427175556 2.83343159508416 3.15670092898375 2.63008986740641 1.74634222175610 2.03952353952233 1.87708849646003 2.84644081929846 2.51945000963219 3.08619668720941 2.65841270268966 2.17619198661687 2.30952954065455 2.31415807302829 1.52928966667223 2.54618949560459 2.12889322183338 2.35277732961699 3.16149479172541 0.294173551438043 0.294173551438043 0.310266222642264 0.301562974129008 0.301864680166362 0.304219428499579 0.294824159281349 0.308317638740029 0.294173551438043 0.294173551438043 0.294173551438043 0.297597875246575 0.294173551438043 0.312776746601965 0.300394215315464 0.316424118968858 0.29587828235549 0.297235023836748 0.319796941043985 2 2|0 -|/ 2254172 2254708 2254389.4 2253932 2256075 - gene protein_coding_gene FALSE TRUE AT2G05890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07450.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.290676200165918 -1.53015058060361 0.154517425746481 1 0.455751426888158 4.93577059167264 -0.290676200165918 0.283381616656876
AT1G67450_at 0.518845864764085 0.58959900077389 0.437307521430448 0.731102082350198 0.39284099550681 0.423766586865541 0.272665759184208 1.01108367018451 0.883656979356175 0.916851142117675 0.148984883584801 0.696726910449237 0.529045495757219 0.534038579725916 0.707571750524332 0.498983286698203 0.614556151277902 0.577843304612379 0.579374567558934 0.193758203474528 0.196745276652810 0.192766879761255 0.190324830572754 0.187594301926337 0.195765231588184 0.189746414308112 0.189917326013013 0.202102993804184 0.207896730237992 0.192224610261553 0.194260021748413 0.190354729780355 0.189220899086523 0.193297142995176 0.190626679280026 0.190267210827915 0.199901678135661 0.190336992731067 1 1 + 25270457 25270968 25270730.909 25269826 25271022 + gene protein_coding_gene FALSE TRUE AT1G67450.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G13680.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.178309855768635 -1.52984749969583 0.154591696830914 1 0.455370852041018 1.21303294763563 -0.178309855768635 0.138177257444301
AT2G28590_at 2.46621553356023 3.0680692910188 2.44381674102672 2.48262038462613 2.83278164835772 2.29732907123613 2.76391109812779 3.03744724245544 2.43943946856377 2.51792092542049 2.52488146749698 2.52882776805890 2.44766103833355 2.80080683109924 2.53339513513296 2.62120851272284 2.53447240352104 2.19493699073602 2.76033936271874 0.193869969120872 0.196164411684996 0.191234231457916 0.194595323240873 0.190218933988573 0.194356278598975 0.192974644937585 0.196074714517093 0.191327725281553 0.189183738482893 0.193647354458003 0.187996065934543 0.189585894032528 0.191279117311793 0.201586106397927 0.188153659820134 0.210365502661959 0.190220963840742 0.190943459763104 2 2|0 +|/ 12257923 12258489 12258247 12256756 12258745 + gene protein_coding_gene FALSE TRUE AT2G28590.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G07870.1); similar to protein kinase 1 [Populus nigra] (GB:BAA94509.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.184533323579432 -1.52979744219772 0.154603966581818 1 0.455307999939385 5.2219440532788 -0.184533323579432 0.147377679297093
AT2G41690_at 1.62958334240705 1.30122746133518 1.93449837302927 1.90596922747489 1.56609856814050 1.44259962068130 1.31790535232475 1.71167950634863 1.73637313503053 1.71851498527392 1.90340579732241 1.58484000158214 1.68882439191764 1.52442161565711 1.83606616650754 1.97051232754213 2.01293492857829 2.267431259714 1.85641990852654 0.199668750086215 0.201496834262704 0.20560522156522 0.203890862725110 0.206663915690463 0.203360154993571 0.202718263060233 0.201532263804032 0.201588446620073 0.200354745905126 0.206193525588996 0.199668750086215 0.204680993050077 0.200186368092675 0.207717449556067 0.208936939156259 0.209435954322759 0.205425412956380 0.210174266854193 2 2 + 17388941 17389454 17389171.727 17388801 17389655 + gene protein_coding_gene FALSE TRUE AT2G41690.1 AT-HSFB3 (Arabidopsis thaliana heat shock transcription factor B3); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor B-3 (AtHsfB3) (HSFB3) [Arabidopsis Thaliana] (GB:O22230); similar to HSF4 (HEAT SHOCK FACTOR 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36990.1); similar to heat shock factor [Nicotiana tabacum] (GB:BAA83710.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.150155541609959 1.5295740275249 0.154658738750116 1 0.455027496319708 3.41069046682419 0.150155541609959 0.0913986812191874
AT1G65490_at 10.2469870909589 10.5646643723170 11.4949038945632 11.5039798080926 10.5195051010715 10.4882131001082 11.5992852601252 11.6632235589213 11.5443448239192 11.4631939979727 11.4754403080195 11.1583188596716 11.1626906420504 11.6704696672148 10.4796898688787 11.5951874346343 11.1335584266841 11.2661461135577 11.4766479773661 0.0800168545822369 0.0774526931079316 0.0813289261820502 0.0782156554042341 0.0774022254971803 0.0854478518117137 0.0768517981638045 0.0817406876169898 0.0823797830398956 0.0784444032745997 0.0788316431028299 0.0801347625652448 0.0779031618479471 0.0770028870504842 0.0820132094821325 0.0793831980500292 0.0820256423959927 0.0858422434011839 0.079576527988908 1 1 + 24358465 24358811 24358675.727 24358434 24359014 + gene protein_coding_gene FALSE TRUE AT1G65490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65500.1) -0.134465431309422 -1.52902194592978 0.154794158805018 1 0.454334449961446 22.3788035723572 -0.134465431309422 0.0563607246051482
AT2G37820_at 1.47223082150768 1.16253684031375 1.57539250808530 1.32721196431733 1.42239865661469 1.23490648566861 1.34419235086205 1.33539938639012 0.960678457989952 1.14838347319012 1.50584549196444 0.755233436581488 1.42948894953186 1.43454536762739 1.50633101114728 1.28667955478018 1.43231471458365 1.64101573259668 1.3419280925844 0.182559891669927 0.187415803118837 0.184665058890627 0.189645073030765 0.186792419027335 0.190982884126802 0.186032648067957 0.184739906335447 0.203984219191932 0.189484053287176 0.184796042191109 0.185834962394938 0.186244312223269 0.184092643712268 0.182950790676391 0.186011048040934 0.189347975039153 0.193886637088024 0.188746240815610 2 2 + 15854936 15855460 15855151.091 15854570 15855568 + gene protein_coding_gene FALSE TRUE AT2G37820.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G37800.1); similar to Hypothetical protein [Oryza sativa] (GB:AAK55769.1); contains InterPro domain C1-like; (InterPro:IPR011424) 0.142494664166608 1.52876367067621 0.154857546409641 1 0.454010281341672 2.6214145218565 0.142494664166608 0.0759736729491979
AT3G29060_at 2.14135079394532 2.06470064623414 2.36510866564189 2.12929786455516 1.82688989484823 1.70992732077926 1.89460331385877 1.91343463830922 2.11052638071946 2.27935004025399 2.08635104745251 2.05938492308738 1.71055374099113 1.83894160802245 1.37069163695327 1.85063543678040 1.61590796599351 2.34238478395172 1.98992829950225 0.214317354556987 0.215526014481823 0.228159229651095 0.216427772231550 0.227174805027420 0.216520918112725 0.233449940052615 0.212553961136957 0.217562151979798 0.232012044158653 0.216395573441855 0.216575499307111 0.222471608850231 0.21939529382944 0.215048476496928 0.215036132972302 0.21637516755025 0.213836622234796 0.214988780188249 3 3|0 -|/ 11046247 11047074 11046649.778 11046227 11049702 - gene protein_coding_gene FALSE TRUE AT3G29060.1 similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03260.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03240.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.131480796109289 -1.52869463385542 0.154874493689184 1 0.453923636974495 3.99864312546947 -0.131480796109289 0.0475559888780539
AT3G04650_at 5.20436018478591 5.58552736978753 5.34977785233597 5.51952260767848 5.64188383552826 4.81096990877207 6.11666788413164 5.88735892455186 4.45335234862237 4.62350029535672 4.59774691411508 4.79021671100395 4.88785630361322 4.32594768131509 4.427850446521 4.58917111259534 4.15054170608803 3.82810995767477 4.35232101892137 0.228507588312346 0.229547428151290 0.227297528918746 0.222923360320352 0.225891779672885 0.235166161875376 0.226679723581161 0.219917779302407 0.238784177979894 0.218846906750304 0.224633986881952 0.21971390006001 0.22057030766408 0.223150200189839 0.218846906750304 0.220374366233965 0.240775927741823 0.219435527570183 0.218846906750304 3 3 + 1263505 1264261 1263832.091 1261990 1264628 + gene protein_coding_gene FALSE TRUE AT3G04650.1 oxidoreductase similar to amine oxidase-related [Arabidopsis thaliana] (TAIR:AT1G56000.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG22072.1); similar to Os12g0597400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067194.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) -0.197325578293274 -1.52866448114940 0.154881896132646 1 0.453885794705520 9.97754423348778 -0.197325578293274 0.165726588037949
AT2G34800_at 1.44474739108281 1.70579591931131 1.69210905646919 1.59403472187607 1.42774172578164 1.49981234162227 1.28773444849057 1.59208915738366 2.06145281062439 2.06642784676303 1.45089385677528 1.47700248164251 1.73873982687164 1.70406511888370 1.97767340330124 1.45916032257612 1.89289159778061 1.98478300375882 1.98692810536632 0.177163750459469 0.18030845405112 0.190090009969855 0.178053200360461 0.176004018579448 0.176158292575868 0.17299147486292 0.181427706255384 0.180202157685212 0.186752090307554 0.175774767429281 0.186272687019014 0.173144168439537 0.176467069831584 0.177853248523536 0.177975537480191 0.179104038000113 0.186441640834882 0.175477452343552 2 2 - 14689455 14689570 14689508.636 14689442 14689594 - gene protein_coding_gene FALSE TRUE AT2G34800.1 unknown protein -0.140892826882817 -1.52826950296122 0.154978891002679 1 0.453390131369719 3.40496848976885 -0.140892826882817 0.0725160726513459
AT3G18070_at 1.54695517755860 1.61466462874612 1.23459972328766 1.49609000541182 1.54112017198137 1.37205323771822 1.75287913863338 1.53936746979493 1.99542173849236 1.77524587236412 2.79461376490169 2.71373462302677 2.12044732716541 2.66867271883629 2.42945802425420 2.43834901513375 2.02150717237652 1.81761334057291 1.91885481524806 0.225582571383711 0.226944508464834 0.221991139123713 0.230392973151508 0.229552504411922 0.223187774595573 0.231268058241908 0.23733545988475 0.235014946762644 0.227333281067394 0.220864141119392 0.234243079830875 0.228821143602642 0.22726671074998 0.223899558273290 0.222306289855784 0.227041865129643 0.231517222208771 0.231293695288483 3 3|0 +|/ 6188883 6189681 6189239.5 6187300 6189953 + gene protein_coding_gene FALSE TRUE AT3G18070.1|AT3G18070.2 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18080.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ramsey] (GB:ABC55716.1); similar to beta-mannosidase 1 [Oncidium Gower Ramsey] (GB:ABC55718.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18080.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.138270601915886 1.52825823388166 0.154981659125090 1 0.453375990810713 3.64824468096732 0.138270601915886 0.066380078309209
AT1G67740_at 12.9497682906185 13.1183823044774 12.8524566853511 12.8687189837364 13.0044572613919 12.9326905486989 13.5084598566647 13.5964205178309 14.0925128965087 13.7712493786143 14.0615312853148 14.1087781994814 13.9146124922135 13.9863144269931 14.0752575510283 14.0751964158393 13.4532654388714 14.1691311177311 13.7101043475345 0.0539637273753683 0.0517077765210812 0.0575267264006808 0.052069618144498 0.0521798212430173 0.0590343282364026 0.0538225823841180 0.0546841855575505 0.0576305156106746 0.0542001512358624 0.0523601789308098 0.0528628462888685 0.0527222115805287 0.0537891764691372 0.0524421840461947 0.0517697371162008 0.0575071634527293 0.0517077765210812 0.0534916064714878 1 1 - 25398150 25398611 25398364.091 25397731 25398817 - gene protein_coding_gene FALSE TRUE AT1G67740.1 PSBY (photosystem II BY) PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood. Identical to Photosystem II core complex proteins psbY, chloroplast precursor (L- arginine-metabolizing enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] (PSBY) [Arabidopsis Thaliana] (GB:O49347); similar to Photosystem II core complex proteins psbY, chloroplast precursor (L-ar (GB:P80470) -0.128060773777517 -1.5280144372202 0.155041555521166 1 0.453070087933221 27.0231525095062 -0.128060773777517 0.0352890187524479
AT4G27850_at 1.46527640300096 1.20130711533685 1.66856168170246 1.2125729734653 1.37708021407729 1.61063565366258 1.17402880222896 1.16579785909094 1.31334044279741 1.07486261377261 1.1778327486071 1.39914005952132 1.42590193526869 1.07100871660802 1.08906941472064 1.34838344460094 1.51399807195538 1.13437634613701 1.14154423210523 0.186014584208564 0.187990616448738 0.189634186251812 0.186014584208564 0.191986438515890 0.189569473814253 0.194211595781915 0.187976650203998 0.196102933403869 0.188847981825890 0.186014584208564 0.192247843220286 0.193537376617555 0.198846874738575 0.191034608765298 0.187926982817763 0.186014584208564 0.202476179030416 0.187323258860061 4 4|0 +|/ 13872194 13873435 13872940.333 13870388 13873515 + gene protein_coding_gene FALSE TRUE AT4G27850.1 proline-rich family protein similar to DNA binding / ligand-dependent nuclear receptor [Arabidopsis thaliana] (TAIR:AT1G44191.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT5G56330.1); similar to pherophorin-dz1 protein [Volvox carteri f. nagariensis] (GB:CAD22154.1); contains domain PRICHEXTENSN (PR01217); contains domain COLLAGEN ALPHA 1(XVIII) CHAIN (PTHR10499:SF88); contains domain COLLAGEN ALPHA CHAIN (PTHR10499) 0.154495749215725 1.52797214565515 0.155051947829727 1 0.453017025822599 2.58268072368857 0.154495749215725 0.099746369171166
AT3G55420_at 3.24012805515282 3.20003073137937 2.58468495474542 2.57092619627736 3.18924900926669 2.7071708329716 3.89012480136016 3.58020900201155 4.2146770037684 4.13089147692831 5.25458810623239 6.26830833132435 5.20860406550004 5.54403469135424 5.92455728971804 4.9137932060243 4.62035131268903 4.87496251724146 4.5630806361033 0.237693290878259 0.238247002933680 0.242148444620482 0.234174324072001 0.241738976719083 0.236449426069021 0.238821260392033 0.235282486086699 0.253967051660359 0.234552879038511 0.234174324072001 0.244259730451886 0.235620066689244 0.2367314296684 0.239476260064413 0.240817247474286 0.238690420132196 0.239026822496327 0.237131447140167 3 3 + 20558997 20559505 20559223.091 20558694 20559744 + gene protein_coding_gene FALSE TRUE AT3G55420.1 similar to Os12g0571300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067085.1) 0.154325750958218 1.52791820895092 0.155065202574977 1 0.452949354175966 7.93483193736753 0.154325750958218 0.0994491219883572
AT2G23120_at 11.7027536918115 11.7849413045539 11.3225044522924 11.3395064318286 11.8240283397463 11.5868394883789 11.9804876068636 11.9388121864217 10.6191371191657 11.3262525105867 11.2765603859090 10.8332954039866 10.9702875415636 10.9507411211750 10.8808128364594 11.1609850229944 11.0746776231195 10.7918543261107 10.8135356301735 0.0824128761953417 0.0830962592114209 0.083029645198634 0.08469066459644 0.0827764379270703 0.0854686767645731 0.0829516105563004 0.0849397554989802 0.0937855454949979 0.082867002273731 0.0847544800097837 0.0817951826234212 0.0870757240421554 0.0847311756627833 0.0842643512804614 0.0825836880069737 0.083907323932924 0.0847660092763831 0.0834667660592774 2 2 + 9849242 9849409 9849319.364 9849123 9849714 + gene protein_coding_gene FALSE TRUE AT2G23120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23110.1); similar to PvLEA-18 [Phaseolus vulgaris] (GB:AAC49859.1); similar to hypothetical protein MtrDRAFT_AC144765g23v1 [Medicago truncatula] (GB:ABE87033.1); similar to LEA-18 [Phaseolus vulgaris] (GB:AAF81194.1) -0.130384494997503 -1.52790736746635 0.155067866948182 1 0.452935752092905 22.6410059557238 -0.130384494997503 0.0441337787272371
AT1G71340_at 5.66649822109544 5.63843800230723 5.90343948992186 5.41115195892181 6.28420056954592 6.21037552348427 6.26267542724294 5.92332294491771 6.29268825447334 7.1683123726049 6.76755189834467 6.66217937135819 6.63004941641088 6.68922940791113 6.32124660239718 7.0025881185828 6.74591740996748 6.47347079650388 7.70441577363264 0.192975827050952 0.188970248425135 0.189151106025362 0.182470610754019 0.181659034623930 0.188759261420036 0.186027702040083 0.189870852320859 0.195513343560172 0.183548878418798 0.184579270804691 0.183295417604930 0.183040230498902 0.19506341383063 0.186507361392832 0.183056617738477 0.185906500286841 0.193466798424819 0.192266622719195 1 1|0 -|/ 26889278 26890255 26889662.1 26889162 26892000 - gene protein_coding_gene FALSE TRUE AT1G71340.1 glycerophosphoryl diester phosphodiesterase family protein similar to Os11g0236000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067568.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95195.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) -0.1570257179874 -1.52728778004028 0.155220200980165 1 0.452158496156797 12.7708467311404 -0.1570257179874 0.104371423192743
AT4G17970_at 3.82729715746171 3.84819876696815 3.80601401539921 3.57882506690474 3.68848681295309 3.71251666126224 3.48594855676797 3.59853454248469 2.97705727716578 2.91399843714856 2.94029264960396 2.62670869406375 2.42586851246901 2.54932735809756 2.59807768509861 3.15801564527153 2.65504127760027 3.44085975980258 3.30822448188409 0.228200346282444 0.232235508206572 0.228658145203630 0.22790135367007 0.230036189178777 0.238367377576877 0.235716221016599 0.231292891499797 0.229996137310594 0.232385823090116 0.232725761637014 0.22911896001943 0.241554331020662 0.232262260448330 0.227993640774375 0.229557289174794 0.232363366477165 0.227096425329356 0.230547780602239 4 4 + 9977136 9977710 9977402.727 9975420 9977734 + gene protein_coding_gene FALSE TRUE AT4G17970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46600.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46610.1); similar to Os10g0572100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065461.1); similar to Os02g0673100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047711.1); similar to Protein of unknown function UPF0005; Rho GTPase activation protein [Medicago truncatula] (GB:ABD32183.1); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) -0.130343450553021 -1.52711997367975 0.155261480778154 1 0.451948020980895 6.62607803743375 -0.130343450553021 0.0442237573418319
AT1G48640_at 1.51821118473250 1.55130219016423 1.59477753752419 1.50323967840667 1.69187084663297 1.65274968244128 1.92709641577477 1.52080763594670 1.81377438302296 1.72146809190348 1.33906009693710 1.40799962504261 1.37321670352890 1.62377607913711 1.41537413254347 1.67284942502940 1.6119847715709 1.60270427494871 1.77064506511192 0.196164108210587 0.199947763034736 0.199267066195259 0.208771021924155 0.211349463744945 0.199793461044955 0.2052525171305 0.201963797741651 0.20438178199058 0.207036170493619 0.201530724062169 0.200532423262983 0.197997661978480 0.199142883082928 0.197467064840469 0.197733702011108 0.210228514334354 0.202770394175031 0.202491990623619 1 1|0 +|/ 17991478 17992377 17991853 17990026 17992659 + gene protein_coding_gene FALSE TRUE AT1G48640.1 lysine and histidine specific transporter, putative similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid permease/ amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.1); similar to lysine and histidine specific transporter, putative [Arabidopsis thaliana] (TAIR:AT1G67640.1); similar to LHT2 (LYSINE HISTIDINE TRANSPORTER 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G24400.1); similar to Os08g0127100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060901.1); similar to histidine amino acid transporter [Oryza sativa (indica cultivar-group)] (GB:CAD89802.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.140726730911894 -1.52598922713793 0.155539888709761 1 0.450530126657248 3.25725680575545 -0.140726730911894 0.0726160201801594
AT4G09340_at 5.26779099062026 6.01587776142123 5.67257840244395 5.85686798878413 6.60273982428951 6.41550761028647 5.83866440129157 5.80154781382503 5.83178155459702 5.18738282449162 5.3038974562684 5.35952618089127 5.45213890039932 5.40938538154665 5.12376190317065 6.0118642119229 6.03694145772171 5.23845155799222 5.61081433310474 0.204389440370175 0.205342078525282 0.206795503247203 0.20239340070902 0.207943740509052 0.204099902547829 0.207225756748004 0.206548714443573 0.208886588935941 0.204403364960149 0.204376801030472 0.21122729045489 0.206755963535587 0.211938061268770 0.220935577088461 0.219854239188782 0.209909165302813 0.210548689956936 0.206696162153025 4 0|4 /|- 5925044 5925265 5925136.1 5924599 5927632 - gene protein_coding_gene FALSE TRUE AT4G09340.1 SPla/RYanodine receptor (SPRY) domain-containing protein similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G35470.2); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877) 0.177311429251418 1.52593100626547 0.155554235323629 1 0.450457138402904 11.4516079084387 0.177311429251418 0.137361152718321
AT1G52510_at 9.46897478480268 9.59959160895088 9.16293251592056 9.13661498674736 9.65395073493957 9.46052454756583 10.4344684008375 10.3180725766901 10.2886708007688 10.1824749970929 10.5060181446349 10.4769212042798 10.3216123224108 10.6557092857521 10.4492637893965 10.7330500499432 10.1725356930294 10.5971933483547 9.97408462428109 0.111397515530686 0.108806723554469 0.109114085746472 0.112002471164746 0.109279198515728 0.113579899143795 0.112651820051842 0.102516367619253 0.111041587278789 0.104670354477623 0.105375026684069 0.102916611011186 0.105647782560227 0.105153038693041 0.108639609560413 0.105838169994945 0.111440023668892 0.109602864188491 0.106079447667803 1 1|0 -|/ 19566840 19568080 19567563.889 19565175 19568941 - gene protein_coding_gene FALSE TRUE AT1G52510.1|AT1G52510.2 hydrolase, alpha/beta fold family protein|hydrolase similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G12830.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE77901.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.130571653758037 -1.52586679412035 0.155570059618518 1 0.450376641217135 19.9731153297765 -0.130571653758037 0.0453637789365771
AT4G12420_at 7.48026439543206 7.51735354080844 6.48124344043035 6.48854627633907 7.09238997528588 6.83306701240795 7.83409076593409 7.57261928105126 9.06306096347717 8.37931767851028 10.2193358670646 9.83945340708588 9.31645154118154 9.30455275063895 10.1196824789789 9.10622412342535 8.30953984331092 9.08240152985878 8.98501445498535 0.163281487557914 0.147624723363432 0.149403278624277 0.15972610104835 0.163054728242829 0.152728665780309 0.151465850444409 0.153342381648465 0.159292918239421 0.162767931974952 0.159430777050333 0.158547452457672 0.155677150739303 0.172812881783906 0.16334521987817 0.150942288482903 0.147008007097308 0.15330649162337 0.153502271874268 4 4|0 -|/ 7349981 7350755 7350369.2 7349659 7353071 - gene protein_coding_gene FALSE TRUE AT4G12420.1 SKU5 (skewed 5); copper ion binding encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues. Identical to Putative monocopper oxidase precursor (Skewed roots) (SKU5) [Arabidopsis Thaliana] (GB:Q9SU40;GB:Q8H7C9); similar to SKS1 (SKU5 SIMILAR 1), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G25240.1); similar to SKS2 (SKU5 SIMILAR 2), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G51480.1); similar to SKS3 (SKU5 Similar 3), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G48450.1); similar to C-terminal peptide-binding protein 1 [Zea mays] (GB:BAE95064.1); similar to Os06g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056550.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:BAC55686.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.137098079660901 -1.52568366922215 0.155615196161823 1 0.450147084926764 16.2731149484698 -0.137098079660901 0.0640640494710256
AT3G26810_at 5.17315766232402 5.71231254216241 5.12704984059328 5.37826939344221 6.05935558773699 5.7948316577451 5.64007769996354 5.25313098870267 5.93848081707769 5.37924472922912 6.46132246601317 6.19980537649852 5.98360713680071 5.87200767477318 5.71868782365067 6.01832210503132 5.6848882673208 5.71525360028209 5.94935168849047 0.236058848406956 0.204212266596885 0.214370980572371 0.214550779052933 0.205374629053528 0.208846171824407 0.206517024842353 0.205503799850139 0.233996137767815 0.214420736346649 0.215810375999181 0.204212266596885 0.2091545522319 0.226158446259527 0.211168740323520 0.206630599462566 0.222751910081717 0.214198501665409 0.207804652196880 3 3 + 9871108 9871676 9871273.273 9869082 9871877 + gene protein_coding_gene FALSE TRUE AT3G26810.1 AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase similar to GRH1 (GRR1-LIKE PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G03190.1); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB3 (AUXIN SIGNALING F-BOX 3), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G12820.1); similar to auxin-responsive factor TIR1-like protein [Populus tomentosa] (GB:ABG56238.1); similar to Os04g0395600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052659.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93930.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.173125645644225 1.52547960537071 0.155665507093551 1 0.449891300630881 11.3734877805315 0.173125645644225 0.131053911292986
AT3G06670_at 7.08393208542376 6.935352211133 6.46071815337905 6.59663927322371 7.02493467602394 7.17864071279323 6.56725627716963 7.03387059495308 7.13275682908665 6.91527205914513 6.57513555668554 6.84854113667888 6.77993631652326 6.90174318786301 6.59062336332199 7.26319350292469 7.04438554336911 6.43244912913538 6.99547269697753 0.170305816046513 0.171880334593712 0.175224909477219 0.172790395986042 0.174917071695253 0.177425478431249 0.174517639734295 0.168894191707579 0.173605245351722 0.173685823007456 0.172222265094048 0.168428461561663 0.168428461561663 0.176878954548883 0.174120903192099 0.173028034018419 0.171141643715320 0.178292019012602 0.170443138064817 3 3|0 -|/ 2106101 2106546 2106304.8 2105465 2113421 - gene protein_coding_gene FALSE TRUE AT3G06670.1 binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism similar to hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT5G49390.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53932.1); similar to Protein of unknown function DUF625 [Medicago truncatula] (GB:ABD32317.1); similar to Protein of unknown function DUF625 [Medicago truncatula] (GB:ABE83194.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein of unknown function DUF625; (InterPro:IPR006887); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) -0.149934574827624 -1.52474440287722 0.155846884472920 1 0.448969934505625 13.7696687457453 -0.149934574827624 0.0918829002751988
AT1G75780_at 1.92946466024976 2.0334932075927 1.10675598932350 1.18434103227505 1.01671681379470 1.55182711112979 1.75554169942955 1.48661769783018 1.7199932437482 1.62441141919960 3.28632914995814 3.64846865910609 1.95754339755229 2.52154200401755 4.37124525336899 2.11875914395188 1.63696288768736 3.13949355896439 2.45538212623615 0.209643337186358 0.212576355959212 0.209067058917156 0.215605381295705 0.210876756929266 0.215399054731708 0.209067058917156 0.219051828585428 0.217202638766882 0.215362957572850 0.217404604822140 0.209619967729599 0.209067058917156 0.209371960298127 0.220399914163667 0.21292504915639 0.212587281158582 0.209067058917156 0.209067058917156 1 1 - 28455088 28455574 28455291.727 28454802 28457301 - gene protein_coding_gene FALSE TRUE AT1G75780.1 TUB1 (tubulin beta-1 chain); structural molecule beta tubulin gene downregulated by phytochrome A (phyA)-mediated far-red light high-irradiance and the phytochrome B (phyB)-mediated red light high-irradiance responses Identical to Tubulin beta-1 chain (Beta-1 tubulin) (TUBB1) [Arabidopsis Thaliana] (GB:P12411;GB:Q9SYQ7); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB5 (tubulin beta-5 chain) [Arabidopsis thaliana] (TAIR:AT1G20010.1); similar to Tubulin beta-1 chain (Beta-1 tubulin) (GB:P46263); similar to beta-tubulin [Nicotiana attenuata] (GB:AAR37366.1); similar to beta-tubulin [Lycopersicon esculentum] (GB:ABB13293.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.157705832059866 1.52459479746500 0.155883815129221 1 0.448782480471577 3.89224741139673 0.157705832059866 0.106045170883206
AT1G68000_at 6.87467802405363 7.51374528080878 7.17350923029485 7.37481028427127 8.50419650510996 7.38405166878485 7.3684784532359 7.28144293978051 7.6360654606879 7.15918746603194 7.6048936999565 7.60439931176001 7.6432200043581 7.54441649908362 6.9398197445655 7.40716527248094 7.22489287386834 7.58716049036145 7.12901544811365 0.222297732518153 0.209533867943483 0.220062553402989 0.210752039105847 0.231941221601456 0.218205299390635 0.215825759264798 0.212356282377001 0.220550135003347 0.211740799566842 0.214026220310424 0.208259491437040 0.208259491437040 0.208259491437040 0.220634714706774 0.214328341188903 0.239023824185804 0.212358153838967 0.211728181440817 1 1|0 +|/ 25495177 25496380 25495870.857 25494677 25496716 + gene protein_coding_gene FALSE TRUE AT1G68000.1 ATPIS1 (Arabidopsis thaliana phosphatidylinositol synthase 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase phosphatidylinositol synthase 1 Identical to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1) (PIS1) [Arabidopsis Thaliana] (GB:Q8LBA6;GB:O81846); similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase, putative / phosphatidylinositol synthase, putative [Arabidopsis thaliana] (TAIR:AT4G38570.1); similar to phosphatidylinositol synthase [Brassica napus] (GB:AAM77369.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.242981138211002 1.52444254988330 0.155921405796343 1 0.448591727487298 14.8106567709585 0.242981138211002 0.226379625282177
AT1G47790_at 1.22916288943345 1.67195800678047 1.38684526609036 1.74197190908296 1.23861254075041 1.42598935148399 0.98626060095413 1.29179692707729 1.02854692271994 1.57650682996873 1.58306222763233 1.35468009299581 1.48784839652933 1.86342389789122 1.46933747117079 1.39991694149954 1.83408865803261 1.44596069847210 1.53797379315537 0.187773697541004 0.187120563341805 0.194068669200872 0.184262285716536 0.188782315874020 0.192689128569028 0.183951621500022 0.191292553828622 0.187125341494166 0.204642923203482 0.189204809496052 0.185903321249914 0.192152094633422 0.188172418978733 0.186653760789782 0.189992461909934 0.201356415760389 0.193529196216065 0.190686782301201 1 1 - 17602456 17602979 17602690.091 17602444 17603613 - gene protein_coding_gene FALSE TRUE AT1G47790.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G50870.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.163670388435276 1.52442582941245 0.155925534640196 1 0.448570778907851 2.83947417644462 0.163670388435276 0.116171760066043
AT3G06960_at 6.8043842585315 7.11424278123404 6.54217250609025 6.63790695752289 7.08990336747716 5.94071468086540 6.06575085687851 6.40329004433485 5.43998555148636 5.84922352076768 5.57547232838279 5.37063873806293 5.56115443440562 5.58948972101629 4.87251427262298 5.44145856436612 4.89724162392227 4.88925592121865 5.80406668324664 0.266821626816685 0.259862933206742 0.273027352305288 0.265004063219028 0.259009360822556 0.278336466236399 0.266265842724219 0.267951463374469 0.284378775667557 0.260406801127748 0.260497209638923 0.258084778147081 0.258084778147081 0.263846928455065 0.268862077780875 0.258084778147081 0.268509177599689 0.264517287638458 0.265244491373447 3 3|0 -|/ 2194394 2195383 2194857.2 2194214 2196553 - gene protein_coding_gene FALSE TRUE AT3G06960.1|AT3G06960.2 PDE320 (PIGMENT DEFECTIVE 320) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44640.1); similar to Os01g0251000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042598.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81221.1) -0.233673995961492 -1.5237591993514 0.156090225074058 1 0.447735693606965 12.0610015744501 -0.233673995961492 0.214737390446144
AT3G25900_at 1.04125426014276 1.20186289564539 1.11305941687173 1.28122844271894 1.00168611997553 0.817004255628656 1.14632444142857 1.13216020567812 1.61414991820595 1.42186974010215 1.78730142114325 2.38406163638428 1.36506438113673 1.6703916702585 2.31793357202083 1.37907094048385 1.19895351801967 2.02035616575784 1.23486767175471 0.182745121412230 0.182289021537387 0.183389383770692 0.190560671681672 0.191589773340118 0.186262966295415 0.188013429236228 0.182787116135735 0.184096203086721 0.194354841443864 0.184015566098236 0.189728272715875 0.182289021537387 0.182289021537387 0.188867415014120 0.187995212380663 0.191886500526553 0.192309414834879 0.182289021537387 3 3|0 +|/ 9483063 9483882 9483528.5 9482070 9484163 + gene protein_coding_gene FALSE TRUE AT3G25900.1|AT3G25900.2 ATHMT-1/HMT-1; homocysteine S-methyltransferase Identical to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S- methyltransferase 1) (AtHMT-1) (HMT-1) [Arabidopsis Thaliana] (GB:Q9SDL7); similar to HMT3 (Homocysteine S-methyltransferase 3), homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G22740.1); similar to Putative homocysteine S-methyltransferase-1 [Oryza sativa (japonica cultivar-group)] (GB:AAN05322.1); contains InterPro domain Homocysteine S-methyltransferase; (InterPro:IPR003726)|Identical to Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S- methyltransferase 1) (AtHMT-1) (HMT-1) [Arabidopsis Thaliana] (GB:Q9SDL7); similar to HMT3 (Homocysteine S-methyltransferase 3), homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G22740.1); similar to Os03g0221200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049411.1); similar to Putative homocysteine S-methyltransferase-1 [Oryza sativa (japonica cultivar-group)] (GB:AAN05322.1); contains InterPro domain Homocysteine S-methyltransferase; (InterPro:IPR003726) 0.132303330602343 1.52373801817336 0.156095460335711 1 0.447709163713123 2.68633289134699 0.132303330602343 0.0514481857552505
AT1G17080_at 9.29557610305686 9.65260629469599 9.53215492957417 9.76092476293598 9.43536920742195 9.1246359779654 8.89919960392928 9.17988755938623 8.93926591194104 8.68221108306568 9.04838070052782 8.90811657041757 8.91276391395073 8.97591476727481 8.5182998055495 8.83023704985563 8.69615094577861 8.90339929953005 8.60987302572659 0.124370985620554 0.119523115489726 0.125422953291442 0.134566040073055 0.121021390658177 0.122384966400372 0.126504171227742 0.124012840597758 0.128073455920359 0.124351324588382 0.120125411901598 0.119039873818459 0.119853460401140 0.12200148893179 0.129580526268889 0.117305250161091 0.131895424836495 0.119491960915621 0.116803858577428 1 1|0 -|/ 5840619 5841428 5841061.125 5840262 5841599 - gene protein_coding_gene FALSE TRUE AT1G17080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53560.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os05g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056334.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.155914185286722 1.52331200473067 0.156200788553533 1 0.447175620840387 18.1565149157982 0.155914185286722 0.103130570811549
AT3G23920_at 9.74588140930018 9.89490059301206 10.4129667893199 10.4738818400988 10.1421300892968 10.1321024768486 10.6934689182916 10.6558156024499 9.81465541347187 10.1866638209595 9.61239887489246 9.2080047972816 9.64622338323192 9.47469867457922 9.21805554012689 10.0597003002994 10.1519390168185 9.68400252223573 9.77994779908212 0.0715218851111706 0.0690387937210236 0.0744307334234302 0.0707739031672999 0.0699522756658494 0.0708414424516649 0.0705237254105593 0.0708806051765177 0.0736930341643124 0.0709902649642642 0.0690640378616267 0.071697465448867 0.069085258999592 0.0725540881221309 0.0693749897129752 0.0690387937210236 0.0749903340143727 0.06929292576384 0.0765797645014766 3 3 + 8643653 8644177 8643867.818 8641576 8644456 + gene protein_coding_gene FALSE TRUE AT3G23920.1 BMY7/TR-BAMY (beta-amylase 7); beta-amylase similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloroplast-targeted beta-amylase [Brassica napus] (GB:AAL37169.1); similar to Os03g0141200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048926.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.126228727180181 -1.52313606107089 0.156244307087426 1 0.446955294402074 20.0483769147544 -0.126228727180181 0.0286642918970592
AT2G42660_at 0.853317294938349 0.792592384563392 1.06404923176371 0.840295820403965 0.777525523312358 0.886692507594854 0.98880659561839 0.570574740361082 0.695022812240076 0.99166341004695 1.19359833663294 0.46273987081813 1.20762622602350 1.00400398870675 0.733921307561187 0.904788556126202 1.25967914000965 1.00566109087846 0.623032259546432 0.206625062074270 0.206625062074270 0.208100473614879 0.210916564316335 0.213639292956505 0.210507417434356 0.213224547896462 0.208137749852798 0.206625062074270 0.218153824753509 0.217981110304043 0.213017521358298 0.214776099718841 0.207680827635105 0.210164690962016 0.206625062074270 0.216911605113324 0.214657741563348 0.206625062074270 2 2|0 -|/ 17774150 17775125 17774562.25 17774127 17775367 - gene protein_coding_gene FALSE TRUE AT2G42660.1 myb family transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G38300.1); similar to putative MYB transcription factor [Gossypium hirsutum] (GB:AAT64038.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.146207085440933 1.52309273228360 0.156255025795435 1 0.446901038098177 1.71743599992239 0.146207085440933 0.0848829896063337
AT4G28320_at 1.6755678573278 1.91029474047050 1.88812979808062 2.07642761515509 1.79818521081354 2.23106835600376 2.15967781013899 2.24531394897105 1.89842125709543 2.01697999535579 2.40980466140552 2.10069959737593 2.12883248191862 2.09989251286199 2.42569051344068 2.13962618213807 1.86199998283868 1.81985775079769 1.55651660009508 0.208125503449676 0.200839763446012 0.215151230441759 0.214394075048043 0.214788127186903 0.208210305510503 0.205331446231137 0.210796989477821 0.21001256931565 0.206693669801696 0.206101197243603 0.20671752829698 0.202012399823358 0.209515146154491 0.205331351219521 0.209391715826504 0.212541520238744 0.237576535957374 0.207224153665546 4 4 - 14018299 14018948 14018736.909 14018189 14020257 - gene protein_coding_gene FALSE TRUE AT4G28320.1 glycosyl hydrolase family 5 protein / cellulase family protein similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT2G20680.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japonica cultivar-group)] (GB:BAB56016.1); similar to Os01g0746700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044230.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547) 0.15003349930894 1.52283251244071 0.156319412570515 1 0.446575210904011 3.97171970605146 0.15003349930894 0.0924303319758622
AT3G56810_at 1.87200692356653 1.66946861910371 1.58456377161661 1.35793424867192 1.56316209289297 2.05031941946150 1.83080673293593 1.31534520928441 2.17059888469174 2.19441475839222 2.32174577821842 2.5663222776829 2.02465620460659 2.36887882252691 3.41307932560258 2.47285435606039 2.60930038438987 2.83173423753658 2.21786495545380 0.185808203513873 0.184757851046722 0.193797777973661 0.187623894598436 0.182729449358169 0.186866977664128 0.183886928632984 0.193691322513927 0.182729449358169 0.186731155926266 0.192664981498904 0.185750175476685 0.188742972985924 0.192131520845966 0.186852903259767 0.187043933399236 0.189725953581726 0.183378918543441 0.18421678706295 3 3 - 21047960 21048431 21048126 21047739 21049926 - gene protein_coding_gene FALSE TRUE AT3G56810.1 contains domain His-Me finger endonucleases (SSF54060) 0.174433284543441 1.5228112979751 0.156324662725510 1 0.446548649305565 4.04063302194534 0.174433284543441 0.1335333507163
AT1G42440_at 6.38217666395257 6.65651293023171 6.55309226309095 6.81017609474355 6.96616881770305 5.69135612261399 7.22438946489795 7.22871195922168 4.98792684730662 5.34262627265047 5.01578786382246 5.46615615723972 5.09776586148649 5.10392319997542 5.04995998941666 5.53143902743898 5.3703644714733 5.10876791300148 5.6932853767465 0.223908518068125 0.223099283027044 0.231197494143548 0.230242631937557 0.223360740037164 0.233564075106281 0.231148211539275 0.226084468211220 0.229394270803113 0.229079523494668 0.228327331963871 0.228961329065165 0.225757394619223 0.224389382667525 0.223099283027044 0.224928917388663 0.234103381920702 0.225230356455016 0.225296096814383 1 0|1 /|- 15897988 15898846 15898459.6 15897725 15902495 - gene protein_coding_gene FALSE TRUE AT1G42440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06720.1); similar to Os11g0298400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067728.1); similar to PREDICTED: TSR1, 20S rRNA accumulation, homolog [Gallus gallus] (GB:XP_001234320.1); contains InterPro domain AARP2CN; (InterPro:IPR012948); contains InterPro domain Protein of unknown function DUF663; (InterPro:IPR007034) -0.245504184228737 -1.52214504294597 0.156489625190988 1 0.445714580290294 11.9687230692484 -0.245504184228737 0.230007719597703
AT2G27380_at 2.42022941408912 2.71868666818732 2.40333685127091 2.68704307991245 2.16583385382503 3.00622807697993 2.08295383803511 2.52020480495863 2.81922203561579 2.09540184364561 3.10390038767862 2.56277010820101 2.77454132381136 2.63888431544270 2.37276043037150 2.40034334219519 2.65724705275737 2.76486607794304 2.21803976057253 0.208548104639132 0.213750656962101 0.21064209084529 0.208548104639132 0.212291706267254 0.211645385087457 0.215770100776952 0.215476210312476 0.209999358448987 0.209321256142105 0.228958613171775 0.208548104639132 0.214277569286887 0.214810649980100 0.218354444155434 0.208723689557422 0.210253832490396 0.213282611120645 0.21677838033668 2 2 + 11722500 11722747 11722676.636 11720489 11722774 + gene protein_coding_gene FALSE TRUE AT2G27380.1 ATEPR1 (Arabidopsis thaliana extensin proline-rich 1) Encodes an extensin like gene involved in seed germination. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to putative membrane protein [Emiliania huxleyi virus 86] (GB:YP_294122.1); contains InterPro domain Atrophin; (InterPro:IPR002951); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Glutelin; (InterPro:IPR000480) 0.205975683684161 1.52207493740992 0.156506991841308 1 0.445626829943103 5.01904891161302 0.205975683684161 0.178759421178281
AT4G20160_at 0.590583419459399 0.613446530602238 0.111342271936823 0.982340425536476 0.566133941182290 0.579833388924926 0.863341363930673 0.345836640644465 0.805018640421181 0.520835911829189 0.476242165052088 0.273347434502952 0.706764554293367 0.480570121477824 0.130302904414468 0.168121183277502 0.405780306348987 0.582593004452546 0.97381560930535 0.234026218050752 0.229526422221630 0.231950675367773 0.229633520876904 0.225188867251785 0.239865412766704 0.232546871976985 0.225729828085384 0.237157968815621 0.229700861160487 0.231640176968272 0.225188867251785 0.225188867251785 0.225188867251785 0.232189875618009 0.228360279503679 0.235539783815384 0.239483943813092 0.244053026525143 4 4|0 +|/ 10894235 10894916 10894596.7 10890993 10894981 + gene protein_coding_gene FALSE TRUE AT4G20160.1 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G30860.1); similar to hypothetical protein DDBDRAFT_0188541 [Dictyostelium discoideum AX4] (GB:XP_636078.1); contains domain NEURALIZED (PTHR12429) -0.203490496527586 -1.52205589904569 0.156511708341977 1 0.445603000258534 1.16636821265018 -0.203490496527586 0.175388944025329
AT4G32230_at 1.65952577809914 0.872143076999377 1.55532311827099 0.975654921332205 1.04871181788044 1.12710443159639 1.28080923872876 1.18031917508414 1.86253030928316 1.82375256873194 1.54559571689082 1.43476687000698 1.45369684067730 1.13265252686264 1.69590852652014 1.63826722812086 1.54523899040459 1.66426346098085 1.83998384552803 0.232000751043129 0.23169308335834 0.227719431297376 0.227719431297376 0.232646721777398 0.227719431297376 0.234612143100142 0.230185527135837 0.232829764543295 0.243670438657159 0.232605991467286 0.227719431297376 0.227719431297376 0.235290427603684 0.227719431297376 0.232965265394149 0.228870021486372 0.230801223811775 0.235275643222559 4 4|0 -|/ 15565378 15566864 15566066.286 15565301 15566977 - gene protein_coding_gene FALSE TRUE AT4G32230.1 ATP binding / protein kinase contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.199895441373768 -1.52111840465987 0.156744112311636 1 0.444429797989453 2.89039278370179 -0.199895441373768 0.170634916531613
AT1G52310_at 6.978972020139 6.73613829123581 6.41114083272222 6.38088210262047 6.98876228612497 6.71727161917095 6.84638695981152 6.51186482443529 6.35205716679608 6.05713201751842 6.12837581918762 6.43045985205528 5.87649399439086 6.13058706875905 6.12601990350624 5.91310721304523 5.90673816608733 5.98744567708022 6.22493164153166 0.190234217412987 0.181966333550678 0.194760623467059 0.189381692064879 0.185640844133722 0.182454162391228 0.181231693259959 0.185070276533161 0.187690934638038 0.179556000453482 0.191979847093429 0.180679762499005 0.194406739619729 0.186535375807413 0.186220380371550 0.184105823692742 0.179723842137051 0.183375651027959 0.183384832236922 1 1|0 +|/ 19483505 19484092 19483821.1 19481793 19484279 + gene protein_coding_gene FALSE TRUE AT1G52310.1 protein kinase family protein / C-type lectin domain-containing protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49760.1); similar to Os01g0104000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041761.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD44833.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain C-type lectin; (InterPro:IPR001304); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266) -0.146398230298579 -1.52063252646370 0.156864678524510 1 0.443821934742762 12.8333159022222 -0.146398230298579 0.0857443601964658
AT2G42960_at 1.91040606264815 1.73578015719190 1.94782349408409 1.30771007447358 2.01839786694213 1.83877925417278 2.16522764475679 1.81483565491642 2.5289591409775 2.30166942473738 1.9288655787995 2.25167466075038 2.21999528839165 2.29039405066605 1.76800742973897 2.05033720124793 2.22262130882603 2.11767259945 2.14766542094287 0.173573554577593 0.171354183853048 0.18275672828691 0.176236741669500 0.173301246431641 0.181447681277003 0.170355331272427 0.177717844923604 0.180118015371504 0.181176620007075 0.179271373835243 0.194304093976449 0.176200013576146 0.178079122710639 0.173874755027664 0.174116897733604 0.171794362650285 0.171802040817413 0.172923090753612 2 2|0 -|/ 17875691 17876456 17876005.111 17875674 17877707 - gene protein_coding_gene FALSE TRUE AT2G42960.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G59110.1); similar to putative protein kinase [Zea mays] (GB:CAH39852.1); similar to protein kinase family protein [Musa acuminata] (GB:ABF69953.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAL58279.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.174143344139468 -1.52036223214170 0.15693178431336 1 0.443483832115245 4.05851703129143 -0.174143344139468 0.133518911331435
AT1G26610_at 1.15237671665955 1.35048563056783 1.87660569094819 1.15632303149496 1.47674831634870 1.87586909231352 1.37277909098621 1.44923771902593 1.74633428342823 1.45359300847383 1.31170896407906 1.10289025644945 1.49725852113364 1.67993440329187 1.70038530794654 1.38814652859274 1.87567037275463 1.76194975240164 1.11535811026499 0.188337551945683 0.190391318248692 0.185623160148958 0.192320127553741 0.191034388584470 0.189295207438409 0.195835417461458 0.19027966403639 0.195178165260157 0.189858946890257 0.184928860652631 0.186624850540531 0.188835849343577 0.191034303653644 0.186799829853156 0.187388843517564 0.19459883831484 0.192509586888169 0.193283040462523 1 1 + 9194496 9195041 9194776 9193337 9195267 + gene protein_coding_gene FALSE TRUE AT1G26610.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G26590.1); similar to ZPT4-3 [Petunia x hybrida] (GB:BAA20137.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.183240644704325 1.52027060562507 0.156954538003909 1 0.443369227847471 2.95288890140322 0.183240644704325 0.147167457227065
AT4G33000_at 7.44225782968881 7.26113226741926 6.98506242042662 6.13169702308906 7.97686597912855 7.21056421922756 7.97619143107193 7.6333423454651 7.33599038655542 8.31703188881823 8.53530203233992 8.2833612263677 8.12797356088022 8.20963719833625 7.96087831311012 8.16492614098535 7.60332014143845 8.00030169116151 8.54685583850519 0.171865963370511 0.168132733214878 0.182105712892469 0.190089228735330 0.169667205025368 0.191210407657993 0.168002843703958 0.175830859132520 0.193406043428538 0.173740709122153 0.173522890459183 0.171386489573774 0.177160521035719 0.172875229412086 0.17859118182759 0.168002843703958 0.184213449864862 0.174515838660849 0.182829800240060 4 4|0 +|/ 15925056 15926352 15925718.3 15924352 15926631 + gene protein_coding_gene FALSE TRUE AT4G33000.1|AT4G33000.2 CBL10 (calcineurin B-like protein 10); calcium ion binding Encodes a member of the calcineurin B-like calcium sensor gene family. Identical to Calcineurin B-like protein 10 (CBL10) [Arabidopsis Thaliana] (GB:Q7FRS8;GB:O82641;GB:Q8GYR3;GB:Q8GZD7); similar to ATCBL3 (CALCINEURIN B-LIKE 3) [Arabidopsis thaliana] (TAIR:AT4G26570.1); similar to calcineurin B-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81532.1); similar to calcineurin B-like protein 10 [Oryza sativa (japonica cultivar-group)] (GB:ABA54185.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.229048528912746 -1.52013802708817 0.156987466398053 1 0.443203409339463 15.4158084774581 -0.229048528912746 0.209517879198091
AT4G13880_at 2.10183692863169 1.27113570919400 1.75691109975014 1.70090411218121 1.87349382911584 2.14232448404847 1.86196830306252 1.94627387970014 2.31123968989571 2.21605756608459 1.29316266681679 1.61996145106804 1.77722414783851 1.62823215203185 1.86509888705721 1.62113646757964 1.75056990014552 1.59119046935802 1.74126650199212 0.195176305146756 0.192936774064802 0.192936774064802 0.195355341368940 0.193976863848508 0.204640959186498 0.194359236335519 0.201388973252309 0.202832906368752 0.199002982752485 0.199038328165845 0.194695162619828 0.199406553021349 0.202880380944715 0.199228362667248 0.197248941599748 0.198987895728032 0.196843530458586 0.197673501884057 4 4 + 8028285 8028552 8028355 8025800 8028610 + gene protein_coding_gene FALSE TRUE AT4G13880.1 leucine-rich repeat family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13810.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13920.1); similar to NL0E [Lycopersicon esculentum] (GB:AAD13303.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.186547279396847 -1.51953448149192 0.157137443948938 1 0.442448656551335 3.69827767840771 -0.186547279396847 0.152108911724843
AT1G65670_at 1.13828434430380 0.696025056059883 1.36279424834766 1.03561094979290 1.06878034661942 1.36637432784843 0.636352019703497 1.04945757991734 1.51309449614191 0.971755729109114 1.55612714698477 1.07309149835481 1.22798690172946 1.50029533715571 0.881097244936523 0.86470894716416 1.54846496351307 0.659228929904097 0.962477583566227 0.183839443982918 0.176525367963042 0.177729325673647 0.182931977899066 0.180462092661035 0.176525367963042 0.178754222587056 0.179018343188183 0.181894863101049 0.190509682729956 0.179049662493378 0.179264459711632 0.185912829183895 0.179135441094837 0.194307690510746 0.179551108148837 0.181601039848532 0.194049900657889 0.182578417317703 1 1 - 24425662 24426413 24426036.455 24425656 24427616 - gene protein_coding_gene FALSE TRUE AT1G65670.1 CYP702A1 (CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 1); oxygen binding a member of the cytochrome P450 gene family. molecular function unknown. similar to CYP702A2 (cytochrome P450, family 702, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15300.1); similar to CYP702A5 (cytochrome P450, family 702, subfamily A, polypeptide 5), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT4G15393.2); similar to CYP702A6 (cytochrome P450, family 702, subfamily A, polypeptide 6), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT4G15396.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE90564.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.171563034884025 1.51928725765318 0.157198913406886 1 0.442139548964016 2.20070205448590 0.171563034884025 0.129717206035509
AT1G03110_at 2.54224096720886 2.54955938432651 1.95039020079802 1.81189180319700 2.15441685251246 1.94287024500377 2.36226824682327 2.53936850663928 3.07249376711599 2.76314085799906 3.13819956094843 3.24343180118613 3.04837986318144 3.2512060148271 3.51045895318601 2.81003236271616 2.86356720362551 3.32929742983129 2.80732917625859 0.212949114675657 0.221377390163804 0.223069925547232 0.21446828576358 0.231382553577968 0.218238505921837 0.213739999748409 0.229154285506645 0.224258623554132 0.218036391378325 0.217811441823954 0.214766750890643 0.218725769069468 0.221886309145013 0.225798503471716 0.210987553050361 0.210617772416651 0.213798874064234 0.212579303294253 1 1 + 750968 751698 751392.727 749246 751963 + gene protein_coding_gene FALSE TRUE AT1G03110.1 transducin family protein / WD-40 repeat family protein similar to WD-40 repeat family protein / katanin p80 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G61210.1); similar to Os03g0746800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051253.1); similar to WD repeat protein WDR4 (ISS) [Ostreococcus tauri] (GB:CAL50543.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.132566642987560 -1.51906197345792 0.157254945930858 1 0.441857899977502 5.24678056705313 -0.132566642987560 0.0534377094839612
AT4G21580_at 8.54272916105257 8.91701266673302 9.15860018997608 9.31984740392252 9.13404011632673 8.6266693572358 8.96221220591164 8.6723947557949 7.64070479731305 8.1876319129827 7.61301856240817 7.5710322875053 8.07720439363081 7.98916402374292 7.35277392007729 8.28041721182036 8.15735333790505 7.9748028529212 7.65643968970011 0.169180444322591 0.168952014150384 0.165417853282550 0.160842077172598 0.165230536763541 0.162674806388365 0.161504999099176 0.169346762362244 0.169151608961413 0.169000642817733 0.167274408392128 0.167768842039303 0.164177573091466 0.161586072650196 0.166990155500390 0.161584654698733 0.166466492502937 0.164714302703141 0.165092810035535 4 4|0 +|/ 11476571 11477391 11476988 11475731 11477780 + gene protein_coding_gene FALSE TRUE AT4G21580.1|AT4G21580.2|AT4G21580.3 oxidoreductase, zinc-binding dehydrogenase family protein|zinc ion binding similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G61510.1); similar to putative quinone oxidoreductase [Thlaspi caerulescens] (GB:AAY18430.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.167457046622508 1.51899406153662 0.157271840324288 1 0.441773001967763 16.7693030439942 0.167457046622508 0.123283448748137
AT1G44030_at 1.43627409177676 1.82128507128217 1.51924115810134 1.65178437403138 1.66423952248767 1.81247071835918 1.69822329023241 1.28756970246444 1.77069616232755 1.55388622157490 1.50245220204859 1.90258363578023 2.19493148089315 1.46619419773946 1.96755249016444 1.78001211116403 1.71804644056677 2.06604956648998 1.51944785998131 0.186067820644040 0.184065307044101 0.184065307044101 0.196353031223275 0.191357565784791 0.189476441776241 0.184065307044101 0.188933340343969 0.184065307044101 0.184065307044101 0.193185721824485 0.188690228165641 0.190433489109581 0.185653809369447 0.200678454406626 0.184065307044101 0.187160916852784 0.184065307044101 0.191222891835830 1 1 - 16727479 16727760 16727639.125 16726677 16729083 - gene protein_coding_gene FALSE TRUE AT1G44030.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G44020.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.155573460975265 1.51897538118912 0.157276487694477 1 0.441749649715694 3.33108824787546 0.155573460975265 0.103313781406622
ATCG01110_at 8.41395215680909 9.15246400357407 8.92612291745622 9.26365889527878 9.55356860656386 7.73794637085525 9.94163000583088 9.6474408817783 9.58721420831455 9.43918527626087 10.6074350187710 10.9012461815484 10.8056354777909 10.7132068364610 10.3618019582486 10.8991299223075 10.0269641653872 10.3475910388905 9.40735989780628 0.155540377143218 0.143344935987410 0.150911992988958 0.148414385249943 0.142264022085713 0.162472263773402 0.149324678866249 0.146000780300201 0.149057850857071 0.143133009209836 0.142749712309973 0.146271139322291 0.139933943414376 0.142057478232377 0.146459334974509 0.141144986139003 0.155020039889297 0.142743880700647 0.142564544801741 C C - 122035 122520 122284.364 122011 123192 - gene protein_coding_gene FALSE TRUE ATCG01110.1 Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. Identical to NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (ndhH) [Arabidopsis Thaliana] (GB:P56753); similar to NADH dehydrogenase subunit VII [Cucumis sativus] (GB:YP_247656.1); similar to NADH-plastoquinone oxidoreductase subunit 7 [Gossypium hirsutum] (GB:YP_538984.1); similar to NADH dehydrogenase 49kD subunit [Gossypium barbadense] (GB:BAF41303.1); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 49kDa; (InterPro:IPR001135) 0.343204483169431 1.51870870539649 0.157342845299581 1 0.441416298437061 19.1099960392947 0.343204483169431 0.347937220143678
AT2G17970_at 4.13996992794652 3.79702210074366 3.42302913325506 3.46955216852151 4.23664151454047 3.65139331711318 3.80617373361664 3.54946446997165 4.32849694484771 3.43578500459797 3.27378593731541 3.61465118191428 3.53848663343653 3.79506300590397 3.15282509401686 3.51007346713510 3.48889774267772 3.65639571213607 3.37692792521741 0.220491761219620 0.217149385110794 0.215898407072164 0.216363462134979 0.223912245800750 0.225296123873988 0.218946502613098 0.215898407072164 0.221452890912970 0.225989663604550 0.225458684856178 0.215898407072164 0.224808216951598 0.215898407072164 0.220972887923483 0.216872197391651 0.219922421514039 0.216222244826225 0.221051566675966 2 2|0 -|/ 7826242 7826948 7826637.1 7826022 7828455 - gene protein_coding_gene FALSE TRUE AT2G17970.1|AT2G17970.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G36090.3); similar to Os06g0138200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056738.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68659.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G36090.3); similar to Os06g0138200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056738.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.2); similar to Os10g0116900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064055.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.168983901391380 -1.51868213356437 0.157349458561708 1 0.441383084983309 7.36791028156593 -0.168983901391380 0.125770708323327
AT4G36980_at 6.37890710343076 5.68339809408017 6.50659097156967 5.81861420219984 6.74136473976066 5.94931571028426 6.33795916397859 5.66481510440915 6.33677938854493 6.82048011541396 7.18111908525292 7.32519623718505 7.51262118629508 7.28192269807425 6.7108783252054 7.71912802220706 6.96997459987011 6.31590058227955 7.3858527273322 0.218601699104699 0.200675611330708 0.197141249988092 0.19750307007841 0.2012585795545 0.208904787311168 0.196743898133404 0.188307162361306 0.208270741462546 0.191810642473843 0.19691155777247 0.194665967576870 0.190775265064737 0.201729543573864 0.195162465238499 0.197814148152287 0.220993437107785 0.198422647910967 0.197493833123694 4 4|0 -|/ 17433771 17434630 17434137.5 17433639 17437063 - gene protein_coding_gene FALSE TRUE AT4G36980.1|AT4G36980.2 similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT4G32420.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52566.1); similar to Os03g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050295.1); contains domain FAMILY NOT NAMED (PTHR13161)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52566.1); similar to Os03g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050295.1); contains domain FAMILY NOT NAMED (PTHR13161) 0.258545027214044 1.51829970645321 0.157444664585140 1 0.440905110238371 13.1225189707857 0.258545027214044 0.24702056986742
AT4G13430_at 12.0368771279622 12.0125946816052 11.8761011049626 11.7605668170000 11.9887939856436 11.7572050394305 12.1082090744433 12.1099852236647 11.3504601023142 12.0160021953129 12.1210144214747 12.0760907115377 11.9564920168246 12.2360349029268 12.0187849294681 11.9084416972533 11.9489895582485 12.4753825454002 11.4689324287165 0.0616693559251364 0.0597211634390691 0.0637991265639618 0.0635509321799292 0.0622876363537256 0.0630280516494018 0.0602445360617782 0.0596282223244409 0.0642851114969997 0.0592102788798356 0.0587659052871765 0.0589945094371775 0.0587659052871765 0.0619556542723313 0.0605126190721416 0.0587659052871765 0.0622589454126741 0.0600363519749634 0.0602178786466498 4 4|0 -|/ 7804197 7805660 7804740 7803929 7807867 - gene protein_coding_gene FALSE TRUE AT4G13430.1 aconitase family protein / aconitate hydratase family protein similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subunit [Medicago truncatula] (GB:ABE92947.1); similar to Os02g0125100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045743.1); similar to homoaconitate hydratase family protein [Trichodesmium erythraeum IMS101] (GB:YP_722385.1); contains InterPro domain Cis-homoaconitase; (InterPro:IPR006251); contains InterPro domain 3-isopropylmalate dehydratase large subunit; (InterPro:IPR012095); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030) 0.129802907808758 1.51818551311498 0.157473102912508 1 0.440762400698802 23.8085176768422 0.129802907808758 0.044985693371554
AT1G72290_at 0.731742928000771 0.805029407748598 0.670581050308747 0.6496104029285 0.714543416140128 0.950662145305637 0.880365792964366 0.975563524123798 1.18637056606626 1.39481681283668 0.852588183381276 0.894012741563042 1.39246603065330 1.15841397632068 1.10546669551188 0.883615038077026 1.37639471834447 1.02000577558113 1.14994847740375 0.192293738286854 0.191942852696901 0.200917836434681 0.192513620710354 0.192416427648673 0.201947099901159 0.199912324349007 0.193016315436986 0.195453058859496 0.204489480156047 0.199784525528572 0.197166004421281 0.212109105171831 0.200582719545165 0.196139552528151 0.192017772833686 0.212055019502333 0.210657662793871 0.192018293494538 1 1 + 27219618 27220131 27219866.545 27219451 27220453 + gene protein_coding_gene FALSE TRUE AT1G72290.1 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73325.1); similar to water-soluble chlorophyll protein [Raphanus sativus var. niger] (GB:BAB72020.1); contains InterPro domain Proteinase inhibitor I3, Kunitz legume; (InterPro:IPR002160); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) -0.130083858355880 -1.51798810575606 0.157522275060268 1 0.440515712750666 1.96180350695573 -0.130083858355880 0.0459900179423356
AT4G25070_at 4.18517157028582 4.04995136573842 3.63379526732279 3.71362737337623 2.78514781743062 3.40878645053711 2.56582355978174 2.64851902281989 3.49329178413426 3.22650036089163 2.94442032492689 2.62778529295825 2.66203765789057 2.71889469021602 2.61952132801541 2.87109465849391 3.29994756683666 2.95980239991516 2.82646611128485 0.193160171487765 0.192909890433803 0.187710773336983 0.187495275099934 0.18759771884994 0.182437062358754 0.190301106979882 0.184316412651320 0.188148514659984 0.186044331555432 0.182652309913003 0.186569848521429 0.195594575395848 0.184609512161696 0.183177514699469 0.183732783205528 0.183106349564029 0.193172726629890 0.197813750562257 4 4 + 12873095 12873593 12873401.545 12872456 12876744 + gene protein_coding_gene FALSE TRUE AT4G25070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48860.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93965.1); similar to Os01g0928100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045273.1); contains domain no description (G3D.1.20.5.170) -0.160587624010044 -1.51777869771740 0.157574450968961 1 0.440254050033223 6.38386484108334 -0.160587624010044 0.112208482968382
AT2G36650_at 3.07867372906776 3.08102799125059 3.11879391529146 3.13329336237335 2.66501649025569 2.72026141171382 2.64334304774227 3.00212812038753 3.42930135900386 3.27090076239704 3.38938304881931 2.86836514382967 3.02309914606543 2.94465724672976 3.24456236391132 3.22954531507205 3.17660787817884 3.26039962716607 3.41549208037490 0.151674790907381 0.148816348399104 0.147352462897326 0.150034197608955 0.145272826141783 0.147159228815697 0.154170319838581 0.156280187750800 0.152823693919236 0.145272826141783 0.151895546998144 0.151377992769985 0.153330566910476 0.151074788135534 0.148334946264033 0.146967046064146 0.147721878071593 0.152994795120513 0.153615577341981 2 2|0 +|/ 15367606 15368249 15367914.4 15366994 15368407 + gene protein_coding_gene FALSE TRUE AT2G36650.1 similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to Actin-binding, actinin-type [Medicago truncatula] (GB:ABE90348.1); contains InterPro domain Proteasome activator, REGalpha subunit; (InterPro:IPR009077) -0.135886261620252 -1.51743109002734 0.157661093569227 1 0.439819751428533 6.18730502775038 -0.135886261620252 0.0628725732940606
AT3G63480_at 1.81820307202738 1.74178179377361 1.86639234303743 1.61224789541582 1.54137162480679 1.77146015568015 1.41112273191961 1.55225321923597 2.06063369702802 1.74759131072455 1.97002679910292 2.26698774530831 1.81631473456625 2.24469860363616 2.40474280590155 2.16116615453513 2.41512543533114 2.24448375004919 2.14266066177074 0.214319700593392 0.210624134172912 0.213021435447674 0.214500223269625 0.212620313109575 0.220021609365303 0.216406627945313 0.209782795379150 0.212419898085851 0.209782795379150 0.215203830044046 0.209782795379150 0.213133016930200 0.211964070212767 0.216611294841684 0.210234253274157 0.209882525599863 0.218175529699402 0.215700511363400 3 3|0 -|/ 23452041 23452955 23452515.4 23451862 23454981 - gene protein_coding_gene FALSE TRUE AT3G63480.1|AT3G63480.2 kinesin heavy chain, putative similar to PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G14150.1); similar to kinesin 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33096.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) 0.136921248770985 1.51727178260182 0.157700815344523 1 0.439620734476875 3.75139000951790 0.136921248770985 0.0655071128242631
AT3G54210_at 11.5528320259893 11.5561603968744 11.1662831141556 11.1077067123434 11.3954908288927 11.1828350593957 11.6027247064741 11.6765405106919 11.6146498598797 11.9655646726728 12.0473372708112 12.2244460934219 11.6990841595475 11.8708508357183 12.4752628058322 12.012698077515 11.4361623717677 11.7788741195760 11.8672293140733 0.0833963399358753 0.0771442093660423 0.0768033779169025 0.078894318327568 0.081199942635144 0.0863398712826227 0.077509711000207 0.0809360611735856 0.0852506935569685 0.0773127036624733 0.0821358551382767 0.0770035651672789 0.0807466934750692 0.079571808668873 0.0781600063712832 0.0772098726369303 0.090226261301413 0.0824318523898336 0.0773341034578066 3 3 - 20078650 20079287 20078897.727 20078525 20079413 - gene protein_coding_gene FALSE TRUE AT3G54210.1 ribosomal protein L17 family protein Identical to 50S ribosomal protein L17, chloroplast precursor (CL17) (RPL17) [Arabidopsis Thaliana] (GB:Q9M385;GB:Q8LCR3); similar to ribosomal protein L17 family protein [Arabidopsis thaliana] (TAIR:AT5G09770.1); similar to 50S ribosomal protein L17, chloroplast precursor (CL17) (GB:O80363); contains InterPro domain Ribosomal protein L17; (InterPro:IPR000456) -0.128355315039395 -1.51670677490607 0.157841764365003 1 0.438914995547655 23.2845237105100 -0.128355315039395 0.0402565181309752
AT1G48960_at 4.35434509081859 4.45118872044844 4.90541989300102 4.94519030842774 4.83909326614731 4.36703760290165 4.53496659482342 4.55940495392948 4.36477654241065 4.52295919126174 4.37082781559026 4.20359515087864 4.58594912117557 4.60367798701072 3.95381298191983 4.36419748917788 4.88364723234711 4.53362643065082 4.4218691730925 0.212977852025096 0.213324499475272 0.214173116840045 0.214931385641409 0.210714180404659 0.216874154609691 0.216839767511861 0.215309794378109 0.218697234578363 0.209080665534745 0.211129471495496 0.208198685481309 0.215050537843025 0.212595791478682 0.208706006389031 0.208198685481309 0.208198685481309 0.212748710307396 0.214555274102560 1 1|0 +|/ 18116280 18117144 18116653.9 18116126 18117401 + gene protein_coding_gene FALSE TRUE AT1G48960.1 universal stress protein (USP) family protein similar to MRH6 (morphogenesis of root hair 6) [Arabidopsis thaliana] (TAIR:AT2G03720.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB39882.1); contains InterPro domain UspA; (InterPro:IPR006016) 0.145045367393338 1.51661292035321 0.157865188234226 1 0.438797779652819 9.05655667631995 0.145045367393338 0.0837831527529144
AT4G29200_at 0.362507965409719 0.405901320559579 0.77898367894315 0.798768608496597 0.570066955241192 0.208188015208172 0.781505452537486 0.651361852504049 0.952963292871877 1.07869143071083 0.837586935897956 0.880071141321295 1.13540882296986 0.641481083395854 0.673101270990903 0.85695660109566 0.874004801439983 0.599523538022134 1.34612117624215 0.216775728903268 0.214824476497402 0.216985136177584 0.220539180408845 0.218016641589592 0.219095570156691 0.218026165831021 0.221806936426997 0.225265320132877 0.229414838948698 0.219701785357468 0.235973137231699 0.228683803629532 0.221138241192293 0.224239466959025 0.226662331522432 0.217883779772397 0.215574937310991 0.220893125045871 4 4 - 14398147 14398597 14398380.727 14398060 14400204 - gene protein_coding_gene FALSE TRUE AT4G29200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49250.1); contains domain gb def: Hypothetical protein AT4g29200 (PTHR23421:SF9); contains domain BETA-GALACTOSIDASE RELATED (PTHR23421) -0.137487929415173 -1.51651519973411 0.157889580175606 1 0.438675740174455 1.53875651827916 -0.137487929415173 0.0670613395294776
AT2G21970_at 10.3988532288534 10.4397723335552 10.7466964869002 10.9611974561591 10.4774686877202 10.2739396515178 11.2637181733952 11.3526134501805 10.3753645892640 10.7451350891815 10.3297337019104 10.1339790780446 10.6630681168663 10.7272348693085 9.8697324238542 11.1661456058589 10.9566516314627 10.6035756445413 10.5963385061868 0.0930974467764192 0.0920058646557317 0.0932193599014263 0.0936374945045188 0.0914933106621757 0.0968892403113258 0.0949479972166206 0.0993112910835434 0.096923039189815 0.0907882707330007 0.0907882707330007 0.091540203676692 0.0907882707330007 0.0928339488601521 0.0954062573942122 0.0907882707330007 0.0951320730238906 0.0943851117843692 0.0923218565615179 2 2|0 -|/ 9364290 9364921 9364610.3 9364063 9364996 - gene protein_coding_gene FALSE TRUE AT2G21970.1 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein similar to OSJNBb0003B01.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE03617.3); similar to OSIGBa0138H21-OSIGBa0138E01.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67810.1) -0.132463993409183 -1.51606821004001 0.158001194350812 1 0.438117574391454 21.3035546979644 -0.132463993409183 0.0539007574298455
AT3G01560_at 6.62634680538728 7.12559729299366 6.33131517904363 6.98562231843759 7.52809137445238 6.79318941176382 7.03308941947508 6.51580404240968 6.61421217745413 6.56712077154561 5.95335752835209 5.84028825266389 6.3332999296084 6.40822339343052 5.45926756869608 6.82681366942274 5.94897211166239 6.33587010798562 6.8634384187171 0.23425602894366 0.236482507747308 0.243049674857678 0.241415165147608 0.235215078765076 0.250499767204840 0.23425602894366 0.235941493984265 0.245838945781962 0.241002859785398 0.240180475661749 0.23425602894366 0.236636988335879 0.238457806236863 0.243439640618611 0.23425602894366 0.279931056224244 0.239795924681279 0.23425602894366 3 3 + 221329 221676 221490.182 219589 221886 + gene protein_coding_gene FALSE TRUE AT3G01560.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to vegetative cell wall protein gp1 -like [Oryza sativa (japonica cultivar-group)] (GB:BAD68319.1); similar to Os01g0169900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042136.1); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132); contains InterPro domain Protein of unknown function DUF1421; (InterPro:IPR010820); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.229491852409979 -1.51602787385278 0.158011269728075 1 0.43806721074108 13.2773079935621 -0.229491852409979 0.210887820004329
AT3G54240_at 1.71758767615852 1.68782327109762 1.6368644599478 1.90619087037999 1.32588360175181 1.70317949013710 1.10286246913720 1.18714343431622 2.13979219783956 1.80340654858669 1.95395132822385 1.64802402185553 2.12458438811568 1.7567682417537 1.97875861873370 1.82101854477396 2.31703790827586 1.75842418279648 1.61001627186964 0.203346603504325 0.202505341075651 0.197507980602330 0.199598826648287 0.207066251323922 0.200208647324481 0.205693460331919 0.209261619629030 0.197507980602330 0.203102836376324 0.210655264721043 0.198019769462123 0.204899317086561 0.207153126839209 0.203721045211307 0.201242417242749 0.21131812748451 0.200828648879691 0.197507980602330 3 3 + 20092529 20093090 20092743.273 20091904 20093123 + gene protein_coding_gene FALSE TRUE AT3G54240.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G36290.1); similar to Os02g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047024.1); similar to Os04g0412000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052736.1); similar to H0717B12.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67159.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.143962312213792 1.51583056708834 0.158060562015545 1 0.437820866060590 3.41888819765648 0.143962312213792 0.0816990506364748
AT2G34555_at 1.77687960234099 1.6522944278288 1.92239905721807 2.24139556227253 1.09704080287859 1.17343210041731 1.09867383212465 1.98171619915136 1.74581339113902 1.42144853315283 1.26798188587701 1.31778757015179 1.25511717731022 1.16642393578846 1.30016704488327 1.19613087678605 0.978336671362924 1.6155584509235 1.73087784402699 0.209025740930482 0.204006921290169 0.204454265582668 0.214061977723228 0.202865427382521 0.204827575290169 0.208764701993657 0.206062843221777 0.207962393450036 0.200560516839639 0.205108092406432 0.200560516839639 0.208300529703882 0.204679623375814 0.204636325087656 0.200810823225471 0.20321228090786 0.205308381316057 0.207600593787157 2 2|0 +|/ 14565131 14565726 14565410.6 14564067 14565776 + gene protein_coding_gene FALSE TRUE AT2G34555.1 ATGA2OX3 (GIBBERELLIN 2-OXIDASE 3); gibberellin 2-beta-dioxygenase Identical to Gibberellin 2-beta-dioxygenase 3 (EC 1.14.11.13) (Gibberellin 2-beta- hydroxylase 3) (Gibberellin 2-oxidase 3) (GA 2-oxidase 3) (GA2OX3) [Arabidopsis Thaliana] (GB:O64692); similar to ATGA2OX2, gibberellin 2-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G30040.1); similar to (GB:BAD99507.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.194674719567851 -1.51526476565504 0.158201987438981 1 0.437114552828901 3.06542955189988 -0.194674719567851 0.164436509521780
AT3G50320_at 1.63979729984510 1.16619966276725 1.89667492625942 1.91094688597677 0.916710947247857 1.40917035611973 1.29819260584367 1.52070980172857 1.84639462869448 1.48381190475723 2.02768278515827 1.54434038640654 1.81427744158800 1.33285079639596 1.78245708845353 1.66192939280820 1.95264766710152 1.86083218172275 1.28643700991367 0.198448454009745 0.196645216912275 0.201607513856028 0.208232623507346 0.201053066734676 0.19842839381364 0.204718691576823 0.196967502037629 0.209048495096168 0.206669096332542 0.203454188021634 0.207332334403407 0.196645216912275 0.199898192587750 0.196645216912275 0.196645216912275 0.196684270993694 0.201104655105174 0.19726795403538 3 3 - 18664818 18665606 18665171.545 18664818 18665665 - gene protein_coding_gene FALSE TRUE AT3G50320.1 unknown protein 0.167698486343675 1.51500696596709 0.158266462264370 1 0.436792785198295 3.11280451001162 0.167698486343675 0.124374253547847
AT1G20830_at 4.42584084438821 4.70687041846746 4.61185845031846 4.27573818947347 4.69563958142785 3.94974401366991 5.70328475433678 5.51081509833248 4.97822661625123 5.15953381669987 4.87361885225178 5.85687710770867 5.39707560621808 5.39769716964305 5.53745827595339 5.47908536300278 5.11491353038142 5.10343329540455 4.90788941538614 0.192513315323827 0.194016979750542 0.200077710277153 0.197521002069482 0.200980250771148 0.193453791474281 0.194127499787607 0.197848531419119 0.194780614576263 0.195558456825584 0.194793302862103 0.21043255025996 0.190012614195594 0.191313912806231 0.190441992649883 0.189973657622263 0.20030307814207 0.193798540408758 0.189875932717897 1 1|0 +|/ 7243877 7244684 7244264.9 7242909 7244893 + gene protein_coding_gene FALSE TRUE AT1G20830.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83236.1) -0.18682721810038 -1.51476050556398 0.15832812240713 1 0.43648520228981 9.91509217689327 -0.18682721810038 0.153361900113120
AT2G28580_at 1.47415160839517 1.64160512004523 1.67498082622035 1.58501988237818 1.55159303751406 1.36348856493518 1.88037659121698 2.22745853823008 1.82731770413402 1.99578860445919 2.09934319917631 2.15390071127414 1.94288505351619 1.99501326819197 2.43768552969651 1.88539916832869 1.95521674228607 1.48749978518295 2.22079653299584 0.200848255655909 0.200624328733391 0.192589628637008 0.195220171845974 0.188746558920041 0.190669114394354 0.188746558920041 0.194907277712918 0.195399016354893 0.188746558920041 0.192425453914689 0.189961320926692 0.193487146856078 0.190572144203289 0.200893722379987 0.189877962079669 0.1912606124555 0.189668506007587 0.188746558920041 2 2 + 12254771 12255298 12255066.727 12251936 12255527 + gene protein_coding_gene FALSE TRUE AT2G28580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44930.1); similar to Plant protein of unknown function [Medicago truncatula] (GB:ABE78995.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.141071867516502 -1.51422049783336 0.158463295614946 1 0.435811380687429 3.67946037748505 -0.141071867516502 0.0758253619219126
AT3G26125_at 1.01997912838786 0.984195224016009 1.16787677010688 1.53222925045164 0.866939670670573 1.14388424562630 1.3293543709543 0.984269016969457 1.08631758343502 1.30807180936255 1.22578360019751 1.58639117163186 1.05933115211750 1.35439469230341 1.29126559240595 1.30202883663511 1.58096066687788 1.79686732260007 1.18261842129696 0.213106400954143 0.210936509831139 0.215942930736446 0.213890074394464 0.215880876302514 0.224577849355968 0.211880194996962 0.219546584343398 0.213640353487804 0.207794688191065 0.217046647984069 0.213433475824904 0.220053449509892 0.207794688191065 0.207794688191065 0.21674984356463 0.222839496314101 0.208386761421352 0.220059759536142 3 3 + 9554083 9554626 9554378.364 9553049 9554674 + gene protein_coding_gene FALSE TRUE AT3G26125.1 CYP86C2 (cytochrome P450, family 86, subfamily C, polypeptide 2); oxygen binding encodes a protein with cytochrome P450 domain similar to CYP86C1 (cytochrome P450, family 86, subfamily C, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G24540.1); similar to CYP86C4 (cytochrome P450, family 86, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13150.1); similar to CYP86C3 (cytochrome P450, family 86, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13140.1); similar to cytochrome P450 [Brassica rapa subsp. pekinensis] (GB:AAK31592.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.152787495223297 1.51303869779881 0.158759468446243 1 0.434337252103355 2.42457286833671 0.152787495223297 0.0993845290779002
AT1G13910_at 4.85779629831638 5.22049470853558 4.80272816450591 5.03990608410367 5.73588821868754 4.97516982358757 5.47965116535886 5.36299103806434 5.16345638628628 4.98172501709925 5.00411222763613 5.44878522618217 5.24161895562975 4.95872817284771 4.70119439046611 5.06109991150434 4.65631972409898 4.41061320830282 5.50284106457779 0.224003417752897 0.218153444438168 0.230719720235485 0.2227865920105 0.229848498001126 0.230275419293475 0.229370573794730 0.228478193817041 0.235583445112082 0.223515227246422 0.218014408776404 0.218872377687363 0.218014408776404 0.230776263385887 0.224078018631537 0.224203361539985 0.224742331060279 0.240066656186243 0.224250891421478 1 1|0 +|/ 4756709 4757787 4757271.125 4755781 4757988 + gene protein_coding_gene FALSE TRUE AT1G13910.1 leucine-rich repeat family protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT5G61240.1); similar to leucine-rich repeat resistance protein-like protein [Gossypium hirsutum] (GB:AAK70805.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.186254371042610 -1.51299497440591 0.158770435205721 1 0.434282727085508 10.2599864208473 -0.186254371042610 0.152848082846284
AT3G53300_at 1.17463468630751 1.06441028468415 1.20476614962137 0.759650005690845 0.744266581764005 1.08709176425172 1.21208988745013 0.890554415295283 1.18663421088019 1.25316506445490 1.22340843289798 0.796064831935801 1.53213564044133 0.727055931038606 1.08644335713463 0.898679570605592 0.98058097588566 1.26332370490327 1.30670728416433 0.208137419213522 0.19800931333642 0.19800931333642 0.198044504947230 0.202540336782251 0.199924746695346 0.206589716151249 0.198107270316926 0.202118462287631 0.20680427300334 0.205190061773453 0.200389359291727 0.19800931333642 0.19800931333642 0.199830990759057 0.198854166043696 0.19800931333642 0.204952685076362 0.203586893593961 3 3 + 19772657 19773153 19772958.727 19771453 19773335 + gene protein_coding_gene FALSE TRUE AT3G53300.1 CYP71B31 (cytochrome P450, family 71, subfamily B, polypeptide 31); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B31 (EC 1.14.-.-) (CYP71B31) [Arabidopsis Thaliana] (GB:Q9SCN2); similar to CYP71B8 (cytochrome P450, family 71, subfamily B, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G35715.1); similar to CYP71B22 (cytochrome P450, family 71, subfamily B, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26200.1); similar to CYP71B21 (cytochrome P450, family 71, subfamily B, polypeptide 21), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26190.1); similar to Cytochrome P450 71B8 (GB:P58048); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.160926328665029 -1.51298810844315 0.158772157395076 1 0.434274165013308 2.17333150960237 -0.160926328665029 0.11363670649126
AT3G43120_at 1.69393217874153 1.42814995974784 1.65961252672427 1.58905606701881 1.44626392231511 1.52960805129572 1.77341596831006 1.75552976427068 2.16216142373077 1.67323936650751 1.69174899233796 1.75857244606795 1.87693513853031 1.82190992851796 1.97011835987389 1.6450118503728 1.56415465025158 1.83503483203647 1.94098453157143 0.187618978370941 0.188003468375341 0.192462221053091 0.188210396999060 0.188553318909956 0.188422649092194 0.189289832387299 0.187933260619367 0.183938495114853 0.18602521726554 0.185197250780109 0.185923652893879 0.18617749123926 0.187050018351690 0.185127739505913 0.183938495114853 0.186731649428667 0.193501304382006 0.187277433816629 3 3|0 +|/ 15105759 15105995 15105876.444 15105071 15106500 + gene protein_coding_gene FALSE TRUE AT3G43120.1 auxin-responsive protein-related similar to auxin-responsive protein, putative / small auxin up RNA (SAUR_B) [Arabidopsis thaliana] (TAIR:AT5G20810.1); similar to auxin-regulated protein [Phaseolus vulgaris] (GB:AAN65371.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.130823912558502 -1.51278608638584 0.158822837809436 1 0.43402224795759 3.45739482914559 -0.130823912558502 0.0498218823191296
AT1G61400_at 2.44683200613155 2.47392559808232 2.400491115448 2.27011777674513 2.01638995355788 2.22723428021652 2.34510569000648 2.24975548115386 2.18540134564382 2.16695189748417 1.90899116895294 2.14817038269645 2.37196067823603 2.02257779246271 2.56082329548431 2.12533489375784 2.49422501335427 2.28694165921443 2.69445048412178 0.172256922343510 0.169411039033416 0.164932383006476 0.167658805512052 0.165974483366546 0.165319610283771 0.165218937270770 0.163579047912317 0.167743712897078 0.166511478690097 0.165557921810393 0.163991247182899 0.185080296626374 0.165996799317869 0.161862349773400 0.165192686507076 0.171233574809383 0.170619484407006 0.162587506382697 1 1 - 22658363 22658966 22658569.727 22658261 22661439 - gene protein_coding_gene FALSE TRUE AT1G61400.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61440.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61430.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.129701438790860 -1.51278534004814 0.158823025065908 1 0.434021317329744 4.59813783080262 -0.129701438790860 0.0462021154054833
AT4G34555_at 4.63021317763286 5.1247991790596 4.16608286759466 4.46270964299380 4.79505909770852 4.19164780375819 5.01306772155554 4.82581351625094 4.90996330496054 4.65129319608596 5.02540842416372 5.35020602383388 4.47733440842319 4.97784013638852 5.29896894323602 4.75550601157757 4.63900799033505 4.65769076647211 4.74533959198756 0.191755653288665 0.200596078709125 0.207342391142245 0.196277691906517 0.192421909223073 0.203982656654542 0.188206132079701 0.194291107492066 0.200271506739591 0.193042398519385 0.198161882075567 0.193848869450151 0.193492954232609 0.195668468470245 0.198946901701138 0.190241827271157 0.212206234715225 0.194416073480788 0.189376457705566 4 4|0 -|/ 16504387 16505219 16504830.9 16504235 16505477 - gene protein_coding_gene FALSE TRUE AT4G34555.1 40S ribosomal protein S25, putative Identical to 40S ribosomal protein S25-3 (RPS25D) [Arabidopsis Thaliana] (GB:Q8GYL5;GB:Q8L955); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to 40S ribosomal protein S25-1 (GB:Q9SIW5); contains InterPro domain S25 ribosomal protein; (InterPro:IPR004977) -0.182859285950935 -1.51220166066419 0.158969528906298 1 0.433293599874408 9.48447947701848 -0.182859285950935 0.148037324291878
AT3G05690_at 6.32329560646296 6.58574700522489 4.84124147452766 4.5500024417462 6.89918754747698 7.10824993811072 4.57079038019698 4.03246355289098 3.39663376088027 3.11938471215684 3.07760364917702 3.01815241629916 3.52203687493773 3.03244047378599 3.04745547214631 3.0776132793267 3.56402381352475 3.16466147045579 3.47197983087994 0.297419408292176 0.28584062263913 0.275424438403211 0.277597872287409 0.289645592408094 0.292427243581252 0.275239760400056 0.277817975871849 0.285123662362368 0.273879482739286 0.274269862128762 0.285000325404419 0.273879482739286 0.273879482739286 0.276276079129128 0.276897669541296 0.276574549871470 0.281505375059062 0.273879482739286 3 0|3 /|- 1676929 1677537 1677220.8 1676552 1678938 - gene protein_coding_gene FALSE TRUE AT3G05690.1 HAP2B (Heme activator protein (yeast) homolog 2B, unfertilized embryo sac 8); transcription factor Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. Identical to Nuclear transcription factor Y subunit A-2 (AtNF-YA-2) (Transcriptional activator HAP2B) (NFYA2) [Arabidopsis Thaliana] (GB:Q9M9X4;GB:O23631); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT5G06510.2); similar to Os12g0618600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067293.1); similar to putative CCAAT-binding transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAO19379.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.165130938752883 1.51186220427070 0.159054786320951 1 0.432870454209334 8.87253784291918 0.165130938752883 0.120792126468860
AT2G04920_at 2.49568836159966 2.43434598870349 2.36664147863434 2.10395664862676 1.68519164980417 2.07580788482418 1.85788232439132 2.09251926232113 2.06614858167272 2.26961009357527 2.06149702507597 1.93626865900082 2.12726426064847 2.28746383732693 2.36272136724293 2.21820266630838 2.12368733672333 2.04259662993291 2.50371749129604 0.185684016298227 0.177967202208710 0.182622202481277 0.178832417336581 0.186223831862665 0.184320421602508 0.190421376572275 0.182090925488851 0.185137572320265 0.179199513592126 0.18382440016057 0.178945281077097 0.180305080458879 0.180157384490288 0.177967202208710 0.180779578906506 0.177967202208710 0.179959670409566 0.180766283434963 2 2 + 1726695 1727168 1726982.273 1726135 1727265 + gene protein_coding_gene FALSE TRUE AT2G04920.1 F-box family protein (FBX9) similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22730.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22720.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.148536117423539 -1.5118172210547 0.159066087208529 1 0.43281438531162 4.35139825567837 -0.148536117423539 0.0916375906084127
AT1G61820_at 2.00120216276466 2.15237053080893 2.78170570605339 2.66343704547216 2.05355216879236 2.17770488442148 1.97707504425715 2.21914354232093 2.31013415221786 2.80208708376434 1.59830601007252 1.80603666309796 1.87732302828267 2.04855878946237 1.86107315589593 1.79062853596312 1.92797093275184 2.42426014336935 2.43346252467266 0.219432243690433 0.219723479374602 0.230667005447922 0.233419163937501 0.213557636327993 0.220277769055689 0.218021849335497 0.218951806955286 0.227177926987702 0.218151996166602 0.218363564477020 0.220803134778565 0.220706311382782 0.213557636327993 0.229319676042671 0.228955550369074 0.21532499950797 0.216320678099867 0.220413544182994 1 1|0 +|/ 22841257 22842030 22841664.625 22838743 22842280 + gene protein_coding_gene FALSE TRUE AT1G61820.1|AT1G61820.3 BGLU46; hydrolase, hydrolyzing O-glycosyl compounds similar to BGLU45, hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G61810.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE77795.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.133403065854693 -1.51180493934319 0.159069172796330 1 0.432799077070799 4.46927267440151 -0.133403065854693 0.057617173873084
AT4G19170_at 12.315859987989 12.5836831756516 13.0930781641852 13.1671161613823 13.1299191461791 12.9872932029934 13.0482728023567 13.1343465956990 12.6642030868221 12.9916684129794 12.7488012272522 12.3347949270627 13.1369939026184 12.8843992635521 11.8136074383364 13.1663328945602 13.2384473133334 12.7143722307594 12.7826855227733 0.0795411341431249 0.0795411341431249 0.0831703472364103 0.0804747250608736 0.0801124482849994 0.0828689800747282 0.080858527878615 0.0803035375291305 0.0916770080309953 0.0795411341431249 0.0811951252041948 0.0817627226062682 0.0808347335412106 0.0847597629919223 0.0843816977764447 0.0814813933057671 0.0841080502989944 0.0878297018519501 0.0795411341431249 4 4 + 10483088 10483531 10483297.909 10481797 10483868 + gene protein_coding_gene FALSE TRUE AT4G19170.1 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to carotenoid cleavage dioxygenase 4a [Citrus clementina] (GB:ABC26011.1); similar to Lactuca sativa carotenoid cleavage dioxygenase 1 (GB:BAE72094.1); similar to nine-cis-epoxycarotenoid dioxygenase4 [Pisum sativum] (GB:BAC10552.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) 0.132838668543520 1.51171516678463 0.159091728316728 1 0.432687184599395 25.7162316498258 0.132838668543520 0.0560659033284915
AT1G03840_at 1.71522848906272 1.62929818067961 1.98341816019967 2.13161800653521 1.8618492872424 1.86065835619361 2.33619570944937 1.96607578892808 1.79252886843055 1.76716307988745 1.92434669672979 1.56967180787876 1.96635814748652 2.11381411951889 2.17786617112926 2.20533780798541 2.33050534633244 2.00290750388981 1.86152975255842 0.213583327656110 0.217348682869941 0.214017717231740 0.219700394529545 0.217946261613332 0.211842470937695 0.212549505348418 0.212196877251686 0.217511644263002 0.218146924431251 0.216616728201014 0.211539224872171 0.211539224872171 0.213275925581769 0.215265738317945 0.216674008504991 0.222879914988295 0.211539224872171 0.218439555052276 1 1 - 967611 968126 967919.909 967505 970129 - gene protein_coding_gene FALSE TRUE AT1G03840.1|AT1G03840.2 zinc finger (C2H2 type) family protein|nucleic acid binding / zinc ion binding similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G44160.1); similar to Os01g0242200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042553.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABD28501.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.138481730169746 1.51120030090435 0.159221142675494 1 0.432045535975979 3.85725517249183 0.138481730169746 0.0705794458858329
AT2G04560_at 1.92513826023048 1.78374066577479 2.06021077008871 1.90875485452851 2.56896442567263 2.28001944400024 2.37579124109525 1.81550082986100 2.31200752288104 1.87361810873016 2.30694387869277 1.90677817986883 2.55668479064455 2.21222854247274 1.93079556255195 2.13774270984932 2.03922889979405 1.8698640027675 1.89431701697722 0.206189822492182 0.20565213376513 0.203047442176139 0.200800262084820 0.193396311948929 0.203420976361461 0.202716896989983 0.199573350797371 0.20165214747289 0.194771046289711 0.192391999451552 0.193996917618001 0.198980362600659 0.198953025146661 0.199735440361486 0.19383709897625 0.194622661961713 0.196913476677520 0.204055287277815 2 2|0 -|/ 1592056 1592624 1592406.2 1591987 1592664 - gene protein_coding_gene FALSE TRUE AT2G04560.1 glycotransferase family protein 19 similar to lipid-A-disaccharide synthase [Silicibacter sp. TM1040] (GB:YP_613397.1); similar to Os01g0752600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044267.1); contains InterPro domain Glycosyl transferase, family 19; (InterPro:IPR003835) 0.161415197816443 1.51086928244466 0.159304393986139 1 0.431633078065978 4.16310549658629 0.161415197816443 0.114836696738663
AT2G18980_at 1.03494743262972 1.38288696617272 0.82184713888355 1.48380920870343 0.669948538173954 0.853952826527591 1.02957294862921 1.70603685834067 0.878858773608483 1.17955235174539 0.954398283039535 0.636815387184693 1.00765290836814 0.779937656107958 1.21749476540627 1.02252179387773 0.994172256116659 0.686048276014887 0.906467642421128 0.210604492016452 0.210644946806035 0.213873808602593 0.213676729649311 0.207198357709580 0.205802098718323 0.207914906428085 0.207011323959792 0.221177849860049 0.205211617730917 0.207517716588248 0.210878781723503 0.209636875222849 0.216243467216366 0.207050322018459 0.205211617730917 0.217460894612793 0.213913288011759 0.215045091059753 2 2 - 8240614 8241134 8240921 8240417 8242398 - gene protein_coding_gene FALSE TRUE AT2G18980.1 peroxidase, putative Identical to Peroxidase 16 precursor (EC 1.11.1.7) (Atperox P16) (ATP22a) (PER16) [Arabidopsis Thaliana] (GB:Q96518); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G30170.1); similar to Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] (GB:ABE83996.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.203442190099065 -1.51077375911443 0.159328425140099 1 0.43151406389539 2.07321178393568 -0.203442190099065 0.177388771280981
AT3G30380_at 3.19564924887828 3.05595476527868 3.15640027815407 2.62085351045488 3.98237467560976 3.43773136123423 3.20742714532889 2.72884410802638 2.95425171963608 3.22997905829401 3.39547925815556 2.99975821516534 3.37336559722858 3.56529342885959 3.60234246442470 3.05785545276193 2.62232415745401 3.18720877333045 3.11255210645690 0.16429278409591 0.171453272364772 0.173949111882480 0.169675444314174 0.192043879165770 0.165403582726475 0.170670400786271 0.16429278409591 0.183250622679308 0.166633528075884 0.168443902312819 0.172274000137693 0.168210839937276 0.175855909897894 0.178260517948134 0.165630852699662 0.183338949250763 0.16429278409591 0.171260792938391 3 3 + 11978487 11979016 11978740.545 11976903 11979050 + gene protein_coding_gene FALSE TRUE AT3G30380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01690.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.18944846488935 1.51072651158705 0.159340312530636 1 0.431455199116811 6.3353449098964 0.18944846488935 0.157850419992314
AT4G17245_at 6.48506037677233 7.42720186187567 7.18308046266345 7.501520227141 7.14494721872151 8.55896919849747 6.14453472149166 8.1379198403561 8.13799869358433 8.3053496159481 9.08659133094439 8.34501995689331 9.32496877500236 9.0687682627088 7.43644668107573 8.6596197880736 9.11034509150774 7.9811785737465 8.46784010147493 0.189596412482766 0.186470784710497 0.186344229501689 0.186705582238487 0.176837445423976 0.177397173758723 0.181934635895733 0.18406912168332 0.185786844804536 0.180426507775752 0.180828029591116 0.175853741298585 0.183084671509878 0.180238818174789 0.180310612975955 0.178741782579546 0.179442373277230 0.182186838908407 0.180346513630873 4 4 + 9669428 9669869 9669653.909 9669377 9670017 + gene protein_coding_gene FALSE TRUE AT4G17245.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G47610.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD64996.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.435668956895095 1.51029730563048 0.159448335039353 1 0.430920512299535 15.7880776273548 0.435668956895095 0.456617670944922
AT3G52090_at 9.0779493928355 9.00320983153425 9.02745025165721 8.99224959766428 9.20823276784755 8.89512507903516 9.38868201158186 9.0277498660988 8.93542929553165 8.82936318796657 9.10396613518794 9.41942249389276 9.00965192615731 9.12766299847117 9.54330756389267 9.28470399281236 8.98333682911428 9.17055035170749 8.7033868688227 0.0958657569983555 0.095286546614892 0.0942889626748672 0.0917947599562754 0.0965154148814592 0.098466961822344 0.094823524637802 0.104488002761067 0.103161144968293 0.0956237871211046 0.0951711716740737 0.0925946580069139 0.0957333932809602 0.0946811721243673 0.0979029933114894 0.0921630027713385 0.0969206631416756 0.0960618737422187 0.0961771713510927 3 3|0 -|/ 19329052 19329938 19329511.5 19328832 19330058 - gene protein_coding_gene FALSE TRUE AT3G52090.1 ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding / DNA-directed RNA polymerase RNA polymerase II 13.6 kDa subunit (AtRPB13.6) mRNA, Identical to DNA-directed RNA polymerase II subunit J (EC 2.7.7.6) (DNA-directed RNA polymerase II 13.6 kDa polypeptide) (RPB13.6) [Arabidopsis Thaliana] (GB:Q38859); similar to ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G29540.2); similar to Os07g0172500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058998.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF90169.1); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain DNA-directed RNA polymerase, 13 to 16 kDa subunit; (InterPro:IPR008193); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261) 0.144482742084648 1.51005826432603 0.159508524339953 1 0.430622765716014 18.0916069683709 0.144482742084648 0.0839151908608064
AT1G78530_at 1.86427393413241 1.95289331065566 1.51934311683982 1.63316264634408 1.52546694816213 1.31329096846003 1.75680875662729 1.62405761575487 1.91036914955969 1.93653845177262 2.18721584473719 2.14475587790954 1.85172834621346 1.56684959911439 1.99777180474395 1.90105544270997 1.59971525195691 1.76534883503525 1.66227871373474 0.161222990534297 0.170441604874273 0.169921442288785 0.170196935594947 0.165264502160908 0.166731967947154 0.16468127466129 0.170693919512046 0.181045536301029 0.161946480402546 0.164995687665831 0.164432970592748 0.165155802289890 0.168856009042204 0.165422189665870 0.161222990534297 0.166659867012232 0.172799563423309 0.170607802911976 1 1|0 -|/ 29544176 29544898 29544562.1 29543982 29545602 - gene protein_coding_gene FALSE TRUE AT1G78530.1 protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G31420.1); similar to Os01g0247500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042578.1); similar to putative brassinosteroid receptor [Oryza sativa (japonica cultivar-group)] (GB:BAB18321.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.130641398697069 -1.51004748302335 0.159511239475624 1 0.4306093373653 3.50526244395117 -0.130641398697069 0.049991473127358
AT3G44780_at 1.83426553198207 1.95646867371727 1.75886860259189 2.28398724221511 1.44134166022238 1.99846076653494 2.01135441982688 2.0740474992092 2.20496362490765 1.93017679323342 2.00243199191916 1.72741370213277 1.98713086108107 2.04052609624130 1.7340598750754 1.70094597006910 1.85488731682327 1.63582119287045 2.11741926288572 0.238597812036211 0.235225474182126 0.238847729557986 0.233389324755963 0.235857016136900 0.233579090106486 0.230899352136021 0.235442889432681 0.230899352136021 0.230899352136021 0.243047369328059 0.235914709568919 0.233979319757146 0.230899352136021 0.231069284641616 0.231645963222311 0.238400256173180 0.232132974719974 0.243058824532426 3 3 - 16332631 16333412 16332919.182 16332611 16333591 - gene protein_coding_gene FALSE TRUE AT3G44780.1 similar to binding [Arabidopsis thaliana] (TAIR:AT3G19515.2); contains domain no description (G3D.3.90.70.10); contains domain Cysteine proteinases (SSF54001) -0.173576948929238 -1.50927559696498 0.159705733007529 1 0.429648091627046 3.87964364259688 -0.173576948929238 0.134604417676007
AT3G26330_at 1.31913687883907 1.08823072269637 1.49800950878073 1.25222448261396 1.18284422888870 1.39886827243071 1.27053738432717 1.21175976268943 1.27752928745932 1.40135723530189 1.34940795995721 1.23967059044514 1.4788661488628 1.31558510636223 1.21601707464097 1.43946638586185 1.71792956396327 1.06306074239587 0.882420864793732 0.197276030271017 0.193214988459384 0.197836306550106 0.199935786396057 0.199754811866588 0.195571253422615 0.201746260743936 0.199021512353022 0.202790118994850 0.209261669763714 0.194124195319138 0.200728364798957 0.200637989211339 0.208542622493963 0.195971328512112 0.192308873508712 0.201573760388111 0.207647959304195 0.19962408255317 3 3 - 9648157 9648685 9648412.545 9648042 9649821 - gene protein_coding_gene FALSE TRUE AT3G26330.1 CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B37 (EC 1.14.-.-) (CYP71B37) [Arabidopsis Thaliana] (GB:Q9LIP3); similar to CYP71B36 (cytochrome P450, family 71, subfamily B, polypeptide 36), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26320.1); similar to CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26300.1); similar to CYP71B9 (cytochrome P450, family 71, subfamily B, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G02580.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.137984210041684 1.50823311596037 0.15996873376366 1 0.428350355201663 2.54750285969801 0.137984210041684 0.0700495541600284
AT4G20130_at 4.00147014630616 4.02695994183782 3.26591993692199 2.9753044749143 4.54686076140994 3.87244085897355 4.63316775142613 3.77399004109231 3.79369784110745 3.94146651539212 3.72560248575 3.97739451891697 3.81765902082935 3.71167376746576 4.70267259889615 4.0589452723389 4.11223605009972 3.30346918865609 4.01191068732037 0.165177318632759 0.161596563358703 0.162237146009858 0.163443426868155 0.162044541905512 0.165820048693748 0.162218348202256 0.161938547630453 0.167418035159646 0.165195859627069 0.166746750127722 0.160639840807009 0.162883155178426 0.161775266019116 0.161477833893785 0.162289166354183 0.160590690216642 0.163824270743288 0.16734866868556 4 4|0 +|/ 10879930 10881445 10880682.25 10878897 10881955 + gene protein_coding_gene FALSE TRUE AT4G20130.1 PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14) similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24610.1); similar to Os05g0587200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056468.1); similar to Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) (GB:P94026); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.216625265257427 -1.50793709113356 0.160043484054532 1 0.427981949622994 7.80796338618149 -0.216625265257427 0.195646362122147
AT3G12280_at 6.51964510871835 6.3957471474069 6.04305012249672 6.44491750410443 6.5573740330086 5.87742260343481 6.2574774244914 6.99593086785679 6.72831177489961 5.98008244249318 5.83369690797935 6.59428831394425 6.07059291499171 6.54167762758058 6.25304712870555 6.67288463260503 6.16256622455001 5.94308423489853 6.40063663557227 0.221269357320065 0.212937186736331 0.219086682296364 0.221200376805540 0.212937186736331 0.225249026999975 0.220733411732125 0.216744212202445 0.228323881208487 0.219349392333868 0.213116236328849 0.214750787614434 0.212937186736331 0.221543293674152 0.223618756046262 0.215554906693398 0.218224883771326 0.218712278346453 0.218094315375710 3 3|0 -|/ 3913718 3914609 3914121.2 3913419 3919140 - gene protein_coding_gene FALSE TRUE AT3G12280.1 RBR1 (RETINOBLASTOMA-RELATED 1) Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. RBR also regulates stem cell maintenance in Arabidopsis roots. similar to retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] (GB:AAF61377.1); similar to retinoblastoma-related protein [Pisum sativum] (GB:BAA88690.1); similar to retinoblastoma related protein [Camellia sinensis] (GB:BAE80326.1); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Retinoblastoma-associated protein, A-box; (InterPro:IPR002720); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Retinoblastoma-associated protein, B-box; (InterPro:IPR002719) -0.211103137094345 -1.50763527141786 0.160119728666951 1 0.427606378747915 12.7007739510124 -0.211103137094345 0.188343233164443
AT4G20350_at 1.11894542635103 1.19175146100363 1.54015556876231 1.74591789138908 1.60737670058932 1.43851442160160 1.64060639566705 1.80715788592484 1.79443396524963 1.61334534434933 1.9323194721931 1.60139071278473 2.15676715785932 1.59326025617416 1.88802360452700 1.60926057244365 2.17790707989501 1.99160806989612 1.83471811561905 0.208423277251890 0.199806590748275 0.202833236014045 0.201352899783049 0.201062602263286 0.202537082853218 0.199360287667619 0.202932275353911 0.20376407236403 0.202573062403024 0.201922062684431 0.199957441945645 0.202065378907886 0.207494015401798 0.20429987198498 0.204060786657691 0.213488977029102 0.215780473621055 0.205512358619343 4 4|0 +|/ 10989120 10989680 10989316.4 10988405 10989851 + gene protein_coding_gene FALSE TRUE AT4G20350.1 similar to Picornavirus 2B protein [Medicago truncatula] (GB:ABE88460.1) 0.132346913665620 1.50726805142002 0.160212536730669 1 0.427149490029825 3.31946134764159 0.132346913665620 0.055779660529785
AT4G35580_at 6.72147383283894 6.64484619514743 6.35729700260718 6.84066510746102 7.38712444444397 6.5530536430272 5.95160538399837 5.46622906168245 6.03048417596356 5.77941083633969 5.85549885661877 5.78116050022749 5.81888463593366 5.81821497641132 5.49237188500813 5.99193817235853 5.65241006598904 5.98342727755457 6.09349938677962 0.197911707007854 0.190796315072899 0.189113608753124 0.187672788815647 0.210413844490585 0.201168491166884 0.193673028454670 0.187369715151194 0.207904238858138 0.192334336297757 0.206339609718201 0.192825924788216 0.190128137357188 0.196157031847778 0.191050321820762 0.189672553955221 0.193726667224176 0.194534907025641 0.194744504027908 4 4|0 -|/ 16888622 16889580 16889191.4 16888410 16890806 - gene protein_coding_gene FALSE TRUE AT4G35580.1 no apical meristem (NAM) family protein similar to ANAC014, transcription factor [Arabidopsis thaliana] (TAIR:AT1G33060.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.209968297101559 1.50533804118435 0.160701074498410 1 0.424749348645606 12.3738050485460 0.209968297101559 0.187249688128529
AT2G34320_at 1.11891568291664 1.09400987813584 1.05085376393179 1.14297867958650 1.00029423783013 1.09949271789858 1.20630915687751 1.38792845134901 1.40546597243695 1.09881048963118 1.21730292322453 1.19205618015777 1.38497259273392 1.09406189070853 0.931804619328966 0.754593949049806 1.28448960835721 1.14849159724940 1.25151177813187 0.203680316215669 0.200016104779507 0.201653105954989 0.202582991960492 0.201472358085375 0.200338003438828 0.198564580749073 0.200875568683835 0.210756316197136 0.211995865830757 0.200378691139599 0.201475243728274 0.205687150900571 0.204200761921801 0.202842199831125 0.199196215953559 0.207641359193536 0.205778023495716 0.210146125497990 2 2 + 14492331 14492833 14492581.909 14492038 14492916 + gene protein_coding_gene FALSE TRUE AT2G34320.1 similar to reverse transcriptase, putative / RNA-dependent DNA polymerase, putative [Arabidopsis thaliana] (TAIR:AT4G29090.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.127171842903366 -1.50524689578723 0.160724177603915 1 0.424636048698596 2.32654836281638 -0.127171842903366 0.0394371819300574
AT1G22360_at 7.1864909422255 7.6643203071433 6.5084858520079 6.65818000531782 7.95360397905302 7.35480660147753 7.2361428939377 7.3084708751055 6.89249827640849 7.51461505860286 7.37634315411687 7.60707444798848 6.90669389917973 7.28765639245907 6.89347345873319 6.97836508132104 6.34234926696568 6.6472109798446 6.9600439925641 0.155980746085045 0.156948806001444 0.152316206401439 0.158500293373470 0.157995209831205 0.157516041641134 0.149689286876132 0.149538126798705 0.153625678683327 0.156069689201033 0.156041555801848 0.153299972693012 0.151422597526861 0.154120730054622 0.158788172933532 0.149576083204224 0.167701060165266 0.152493679837800 0.149538126798705 1 1 - 7895066 7895632 7895382.909 7894847 7897580 - gene protein_coding_gene FALSE TRUE AT1G22360.1|AT1G22360.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein|UDP-glycosyltransferase similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G22380.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); similar to glycosyltransferase NTGT5a [Nicotiana tabacum] (GB:BAD93689.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G22380.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.173788542960664 -1.50516155449360 0.160745812109475 1 0.424529967538786 14.2974534875008 -0.173788542960664 0.135659721882992
AT4G15870_at 2.35874928500123 2.73006684610567 2.94180652837612 3.12181074172125 1.79015332072120 2.32832653080453 2.08402837143534 2.81118465829533 2.57239791357598 2.56993032307799 1.91963205977070 2.03763394376963 1.91312687229296 2.27795447537914 2.24963099843042 1.90615239565289 2.53140175437166 2.32950130184122 2.63569737186312 0.195353820247875 0.204156924052696 0.200884189351124 0.196653476561879 0.197779423150612 0.198038445494918 0.199371362185198 0.202469572974321 0.200414681701406 0.200014384482575 0.198736704949315 0.203031280512791 0.199955517901178 0.200845112946304 0.199032128666671 0.198461610147907 0.200651396208802 0.195832875458226 0.197318663869328 4 4 - 9008387 9009187 9008600.1 9008387 9010962 - gene protein_coding_gene FALSE TRUE AT4G15870.1 ATTS1 (Arabidopsis thaliana terpene synthase 1); lyase/ magnesium ion binding encodes a putative terpene synthase similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT2G23230.1); similar to terpene synthase [Vitis vinifera] (GB:AAS66357.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.198764493727036 -1.50465092521283 0.160875312030101 1 0.423895322409904 4.88991799932139 -0.198764493727036 0.172071074160886
AT3G20530_at 1.53369679992444 1.59352680507368 1.68196391033492 2.12794637421244 1.39652557013439 1.87679578947657 1.19004422209939 1.91548840341318 1.92160149563972 1.34681217560261 1.99613003261471 2.13645488470918 1.79030477277773 2.02448433188685 1.98689693728728 1.79767841503614 1.67548759607176 1.7648195484838 1.87771355330712 0.225501719765072 0.217733218570502 0.216538217197969 0.223382898721983 0.218563209846169 0.229297662843809 0.221310273966268 0.222351227885488 0.225793539347359 0.226558658911006 0.223722405750117 0.217514274437387 0.226248077242337 0.237140937541189 0.225532152120121 0.217476721913223 0.225570567457184 0.227393761518594 0.221640837066511 3 3|0 +|/ 7167139 7167726 7167398.7 7166053 7167935 + gene protein_coding_gene FALSE TRUE AT3G20530.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18610.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT58829.1); similar to Os02g0513000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046943.1); similar to Os01g0936100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045326.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.196887588376929 1.50439074964558 0.160941329355995 1 0.423572010179232 3.47045238752108 0.196887588376929 0.169506025665707
AT3G01780_at 6.2719495145772 6.18081325777294 6.04928776695102 6.04085993470699 5.58101610931844 6.07293847646364 5.6214568286129 6.13942422576608 7.12790959671394 6.76567788747809 6.83275292633009 7.30705758544293 6.61022146734815 6.82256812003688 6.66057679628326 6.61776616552892 6.56946371879562 6.55963181141807 6.99668175652716 0.20935757474225 0.197232969883146 0.203538557477058 0.204834550203791 0.207159674815453 0.200294285060433 0.198941989233799 0.200301111815684 0.205781590073633 0.204701708135846 0.194578496769179 0.198718184115109 0.198878810179783 0.204821324772588 0.203415669832169 0.200090292476476 0.218087373852265 0.198347300370372 0.203127931749204 3 3|0 +|/ 282728 283336 283025.5 279067 283554 + gene protein_coding_gene FALSE TRUE AT3G01780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08710.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95799.1); similar to Os02g0793100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048366.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE79738.1); contains domain ARM repeat (SSF48371) -0.166651820582002 -1.50411527845194 0.161011253277304 1 0.423229728686227 12.85018221634 -0.166651820582002 0.124629961483151
AT3G29130_at 5.37474321605912 6.06477536324639 5.21237670015147 5.19200170749279 6.1440611157562 5.8995616182261 5.58656369329975 5.52819703672684 5.64514206111703 5.28869858353634 6.19646654901443 6.57616187666256 6.34680238423477 6.06889793997074 5.55437735293781 5.76595197550644 4.70951243122359 5.51864271307779 5.50346871671562 0.289379086667946 0.295330479651599 0.289379086667946 0.289379086667946 0.307947694394591 0.289379086667946 0.330375607102308 0.29160297313119 0.289379086667946 0.301410936543250 0.289379086667946 0.289379086667946 0.289379086667946 0.289379086667946 0.297589632848596 0.289379086667946 0.307360079597155 0.302034354021883 0.300225388648705 3 3 - 11103804 11105046 11104121.333 11103527 11105089 - gene protein_coding_gene FALSE TRUE AT3G29130.1 similar to hypothetical protein MtrDRAFT_AC152752g12v1 [Medicago truncatula] (GB:ABE87460.1); contains domain FAMILY NOT NAMED (PTHR13511); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2 (PTHR13511:SF1) 0.168214495222902 1.50406130559517 0.161024956485547 1 0.423162670336973 11.2858874430123 0.168214495222902 0.127138796128968
AT4G02260_at 9.18148783397876 9.06060593407187 9.27040648573718 8.96895622142936 9.35861658755273 8.79661307761477 9.90298751838131 9.53268100188846 9.09256534938857 9.41510569672135 9.31235614117963 9.14016955231493 9.25164139450559 9.21755332437978 9.18381244506275 9.44252652732678 9.26436759161325 9.24905506550983 9.3198868006111 0.149334642191772 0.148880082491316 0.153310406220943 0.145492468053837 0.142760843373247 0.155672892609602 0.142462795741886 0.151757409846531 0.159600800391059 0.141255391024938 0.157417540483175 0.145872150203194 0.146783839236867 0.152493193910851 0.149286101011995 0.143068515153657 0.155745132099286 0.152400706547034 0.139493215798035 4 4|0 +|/ 990346 991120 990568.6 985232 991494 + gene protein_coding_gene FALSE TRUE AT4G02260.1|AT4G02260.2|AT4G02260.3 RSH1 (RELA-SPOT HOMOLOG); catalytic similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT like protein RSH1 [Nicotiana tabacum] (GB:BAC76004.1); similar to Os03g0340900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050067.1); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain TGS-like; (InterPro:IPR012676); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674)|similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT like protein RSH1 [Nicotiana tabacum] (GB:BAC76004.1); similar to Os03g0340900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050067.1); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain TGS-like; (InterPro:IPR012676); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) -0.169479919666848 -1.50304838685551 0.161282313751997 1 0.421904453238637 18.5258132679869 -0.169479919666848 0.129324012744055
AT3G53780_at 7.90689806825281 8.43772067241438 8.47024911874697 8.33192984667466 8.16125014821251 7.73986034243608 7.09418379132041 7.77784590966107 7.34469791713481 6.79941393742039 6.83416097324773 7.17405949357038 7.06530952019513 6.94653990482525 6.53582155160355 7.23748098335294 7.08611995204782 7.22713727399755 6.83653244371122 0.173264041583007 0.158904243988393 0.164759189242952 0.162281753060897 0.166335442364089 0.158904243988393 0.171100941439745 0.161276593097947 0.163748091697453 0.167524922793926 0.166413490882728 0.158904243988393 0.172925167679036 0.173937853687320 0.169046073931530 0.158904243988393 0.169063257735073 0.163400935777994 0.17255791887922 3 3|0 -|/ 19935708 19936651 19936188.667 19935546 19938004 - gene protein_coding_gene FALSE TRUE AT3G53780.1|AT3G53780.2 rhomboid family protein similar to ATRBL1 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 1) [Arabidopsis thaliana] (TAIR:AT2G29050.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os11g0704800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068547.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) 0.195720430394145 1.50202309505716 0.161543175742193 1 0.420631407600689 14.9934306402284 0.195720430394145 0.168305613670326
AT2G33470_at 10.5285280719963 10.7337608854858 10.8743571586869 10.8242967463848 10.8932292868960 10.5855759134402 10.8112776747450 10.7127030843999 10.3948479648518 10.3536934153762 10.671342843108 10.6054311458818 10.3861454750355 10.2537354645023 10.3939925068410 10.4310392656622 10.3467096328732 10.5848643804414 10.1062800266427 0.106480643662644 0.101492435767216 0.10279697567033 0.103730245034102 0.103633849327782 0.108254864555015 0.106173272226610 0.107498961429285 0.107488473715531 0.104123031800454 0.107184744121931 0.103426052908105 0.102402939616435 0.106450290137394 0.105388508402645 0.102686463850508 0.113912269348357 0.107045514885349 0.103144912770728 2 2|0 -|/ 14183819 14184669 14184145.8 14183456 14185729 - gene protein_coding_gene FALSE TRUE AT2G33470.1|AT2G33470.2 GLTP1 (GLYCOLIPID TRANSFER PROTEIN 1) similar to GLTP3 (GLYCOLIPID TRANSFER PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT3G21260.2); similar to Os02g0622400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047468.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10199.1); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 0.136007233765755 1.50136382252358 0.161711104553383 1 0.419813114648233 21.1175151318794 0.136007233765755 0.0667986744687598
AT4G37650_at 3.19018802454429 3.05820831372215 2.88713397890912 2.65461281222432 2.55380680970211 2.82691766652842 2.74710308473418 3.27365052405292 3.67329913302006 3.76873381062130 3.58448915208810 3.75397077325993 3.70131353013694 3.89504331212169 3.46018567611209 3.91254026540680 3.24962933177791 3.62587710236255 3.44602794484341 0.192065361171108 0.192543585397127 0.192713048982041 0.201193415949785 0.192727239798985 0.199920099708111 0.194537830391366 0.194009441694267 0.198640919218296 0.198440385388019 0.193887947180874 0.192065361171108 0.19729136469973 0.192065361171108 0.200835592172264 0.193587856235338 0.201667281155943 0.196674173989129 0.197504685614062 4 4 + 17692920 17693413 17693151.091 17691780 17693754 + gene protein_coding_gene FALSE TRUE AT4G37650.1 SHR (SHORT ROOT); transcription factor Involved in radial organization of the root and shoot axial organs. Essential for normal shoot gravitropism. The protein moves in a highly specific manner from the cells of the stele in which it is synthesized outward. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G49950.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85866.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.159071078254530 -1.50130212498253 0.161726827744658 1 0.419736546825892 6.53757003800377 -0.159071078254530 0.11259549829153
AT4G36620_at 1.89299108959103 1.59361705165310 1.66122683123425 1.9552473949687 1.33838958162718 1.81441078754775 1.64449745271843 1.81761985077799 2.33564946503606 2.17716468069010 2.14298549732493 1.83755914835537 1.88701538469477 1.7357632146209 2.05367146585586 1.57809604689249 2.26968935091425 2.07044098535397 2.15154308047032 0.190157054304576 0.188384580452349 0.187135505101892 0.192484279346042 0.187210738828629 0.196951786668227 0.189345910615664 0.191094588576660 0.194912788302965 0.19079934986075 0.184646600252152 0.186990214154346 0.188686726259838 0.187251785504573 0.200976168382373 0.192525207813525 0.188429474997204 0.193233327257325 0.19746039892186 4 4|0 -|/ 17268914 17269588 17269189.9 17268912 17269668 - gene protein_coding_gene FALSE TRUE AT4G36620.1 zinc finger (GATA type) family protein Identical to Putative GATA transcription factor 21 [Arabidopsis Thaliana] (GB:Q6QPM2;GB:O23219); similar to MNP (MONOPOLE), transcription factor [Arabidopsis thaliana] (TAIR:AT3G50870.1); similar to Os05g0578900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056415.1); similar to GATA-type zinc finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91742.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -0.159706242160629 -1.50046003954895 0.161941559117131 1 0.418691700130485 3.79892752775667 -0.159706242160629 0.113827415121767
AT1G34120_at 5.25942427121673 4.96666645728101 4.87996591622481 4.59016155438456 5.2683096067914 4.7700962179691 4.43139729031882 4.14657131784705 4.29753533124721 4.09807718505543 4.24382191425334 4.55687937333403 4.34411328753217 4.55153300333647 3.99367160021203 4.59762295497966 3.97771309702217 4.53181695278353 4.19316410813784 0.217221188718083 0.219533755110232 0.209937045864455 0.215882345706168 0.214403274649219 0.226141941566531 0.212750341301385 0.208670655282069 0.216615884217097 0.211662019112631 0.215743218836644 0.209725969716828 0.219456581198100 0.222575141492423 0.213381434405525 0.208872121131708 0.219392905976574 0.215270309629318 0.219752510103762 1 1|0 +|/ 12428633 12429478 12429231.444 12426756 12429688 + gene protein_coding_gene FALSE TRUE AT1G34120.1|AT1G34120.2|AT1G34120.3 IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I); inositol-polyphosphate 5-phosphatase Encodes an inositol polyphosphate 5-phosphatase. Identical to Type I inositol-1,4,5-trisphosphate 5-phosphatase 1 (EC 3.1.3.56) (At5PTase1) (IP5P1) [Arabidopsis Thaliana] (GB:Q84MA2;GB:Q9FUR3;GB:Q9FX20;GB:Q9ZSC4); similar to inositol polyphosphate 5-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G71710.1); similar to 'putative inositol-1,4,5-trisphosphate phosphatase' [Oryza sativa (japonica cultivar-group)] (GB:AAT39210.1); similar to Os01g0716800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044072.1); similar to Os01g0183300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042225.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.164753068897374 1.50023415175417 0.161999202163857 1 0.418411484595526 9.06202677787677 0.164753068897374 0.122250121350069
AT1G48420_at 9.7391051960844 9.93484313223412 10.1387685663784 10.0288050270530 10.1795560174365 9.93832247719154 10.1737850204446 10.0033224685761 9.81097301233628 10.0516834157895 10.1410161511380 9.98019021276887 9.88626586579132 10.1635837327294 10.024586031144 10.2463313797492 10.0183571652570 10.1584204139296 9.88608882199748 0.0881011906615331 0.0825404400348078 0.0848603240728463 0.0837118402352199 0.0845615575748559 0.0869963140463589 0.084126298112608 0.0827482817682106 0.090232361762708 0.0853124954624824 0.0856792814475141 0.0847040133594795 0.0820436992262332 0.0847728911025839 0.0883169350424485 0.0833068818566161 0.084861024504801 0.0865496367909494 0.0820436992262332 1 1|0 -|/ 17900461 17901384 17900956.778 17900266 17902472 - gene protein_coding_gene FALSE TRUE AT1G48420.1 D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26115.1); similar to putative 1-aminocyclopropane-1-carboxylate deaminase [Betula pendula] (GB:AAN74942.1); similar to Os02g0773300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048267.1); contains InterPro domain Pyridoxal phosphate-dependent deaminase; (InterPro:IPR005966); contains InterPro domain Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926) 0.134847260017865 1.50001021275437 0.162056365356912 1 0.418133712695992 20.0138596310604 0.134847260017865 0.0642068770414245
AT1G27090_at 8.29396726259635 8.77653683917528 8.03429767375293 8.38198194875346 8.48773920453366 8.41883167796406 8.05901731571512 8.53616661191263 8.73011789471187 8.53024598583845 9.45275654786854 8.82064731682896 9.0438637926953 9.14201809820275 8.96159024839296 9.0891306330469 8.68528710411415 8.61087985152482 8.38325331467843 0.148769351526905 0.143015735706215 0.169556351990688 0.155993381672508 0.14525241440244 0.162780632902175 0.142092417031150 0.152144039005693 0.155862255680682 0.154000035786301 0.141653260618664 0.141653260618664 0.144483504671021 0.149644259916715 0.143470849865204 0.141653260618664 0.152816839079767 0.145976761718701 0.142940260613869 1 1 - 9404032 9405274 9404747.091 9403887 9406243 - gene protein_coding_gene FALSE TRUE AT1G27090.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24690.1); similar to Os03g0688200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050943.1); similar to hypothetical protein LOC_Os11g11180 [Oryza sativa (japonica cultivar-group)] (GB:ABA92081.1) 0.171094959787946 1.49948394407460 0.162190770338511 1 0.41748103629347 17.1353893655474 0.171094959787946 0.132494503307000
AT1G24938_at 3.29191307502171 2.94748211966590 3.08211494985433 2.85050270479017 2.80162462640429 2.97655563792854 3.24830887477608 2.92788279512251 3.87986289994874 3.72653378340842 3.59984241480307 3.58959249564841 3.60414327070839 3.46311558923023 2.98996436405301 3.40599381810042 3.76543999715023 4.40097965712657 3.56864085642547 0.340774060267570 0.358557563836376 0.341529965683600 0.325757106906319 0.341251182578323 0.340747788805149 0.331124352786728 0.343114161898206 0.335644355391958 0.333082596803761 0.325426092682303 0.325426092682303 0.328614853421821 0.332293318997186 0.329469331732191 0.325426092682303 0.325426092682303 0.33487572278909 0.345186998268014 1 0|1 /|- 8790512 8790524 8790518 8789363 8792067 - gene protein_coding_gene FALSE TRUE AT1G24938.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35100.1) -0.149412899405277 -1.49939061498163 0.162214615894455 1 0.417365304923814 6.67949633000215 -0.149412899405277 0.0956587962260416
AT3G31930_at 1.69017985215408 1.97154490994688 2.16458354915138 2.11724466338184 1.71516213777716 2.06126323068597 2.24624765571179 2.36218059632264 2.59947105769133 1.95751521906789 1.77996693082459 2.0547626260077 2.24396205954124 2.01839931390144 2.27150250948856 1.67780612906592 2.02950969279287 2.28400949036268 2.26912808966111 0.185560112614871 0.17874856285332 0.17874856285332 0.182464453589438 0.181892835725461 0.181473033293224 0.184435627859812 0.184213142120959 0.197793887502648 0.184666360204878 0.181188536327418 0.190887859873163 0.187730641260008 0.183311255124427 0.19108429017768 0.182614459258870 0.188124776902706 0.186666358038677 0.186970621759551 3 3|0 +|/ 12930876 12931456 12931152.143 12930821 12931699 + gene protein_coding_gene FALSE TRUE AT3G31930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28940.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.141678234880038 -1.49934353648674 0.162226645581967 1 0.417306927644992 4.20123147412725 -0.141678234880038 0.0801737583943
AT1G26590_at 2.04647061483804 1.62925213189396 1.64311788077165 2.12679905662248 1.63207377775378 1.37885926030276 2.21595594922291 1.990465792383 2.05301699161667 2.49546035506371 2.24246607400955 2.07127960213816 2.47633048537348 1.83746806842443 2.11254108539063 1.60963471706021 1.88150513390577 2.30098494271844 1.82374994939250 0.262044227499930 0.259569876436782 0.267203858779042 0.262731287728323 0.269289261488580 0.259291661981373 0.266280351752477 0.260819301630015 0.252403250973735 0.260665542853998 0.251145543409793 0.248768634125471 0.263237603963424 0.255408440198993 0.252302480926240 0.256780763882488 0.249341873565044 0.253748867225772 0.249902662855537 1 1 + 9190114 9190666 9190477.818 9189611 9190696 + gene protein_coding_gene FALSE TRUE AT1G26590.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G26610.1); similar to PEThy; ZPT4-2 [Petunia x hybrida] (GB:BAA19926.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.166436564975929 -1.49926608687832 0.162246437491274 1 0.4172108927256 3.92817532246618 -0.166436564975929 0.125148814211236
ATCG00740_at 10.0607917335934 10.9380718596832 10.1855530615138 10.2748106420653 10.3387529404731 10.0875764826658 10.7269283164382 10.6742157480089 11.8667276353552 12.0203759493219 12.2880258813017 12.6103797404013 11.4910766772363 11.8307100582375 11.9817046372224 12.2402884222216 11.5098229013573 11.6900802031786 11.9758180714895 0.210928847796073 0.204402430910349 0.215968890769206 0.211947890974540 0.212345596619128 0.213266231104743 0.210280314614587 0.21431619422395 0.205794067207407 0.211004653238178 0.21462292182934 0.218701935286541 0.206357318932421 0.208371867895857 0.214809480919770 0.216287358478748 0.209192261496821 0.222684094572389 0.209529173888854 C C - 77987 78465 78174 77901 78890 - gene protein_coding_gene FALSE TRUE ATCG00740.1 RNA polymerase alpha subunit Identical to DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) (rpoA) [Arabidopsis Thaliana] (GB:P56762); similar to DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) (GB:Q9XQN8); contains InterPro domain RNA polymerase, RpoA/D/Rpb3-type; (InterPro:IPR011263); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain RNA polymerase, alpha subunit, C-terminal; (InterPro:IPR011260); contains InterPro domain DNA-directed RNA polymerase, alpha subunit; (InterPro:IPR011773); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261); contains InterPro domain RNA polymerase, insert; (InterPro:IPR011262) -0.188687393164546 -1.49866159383288 0.162400984528833 1 0.416461448688748 22.3656217399886 -0.188687393164546 0.158933120893993
AT3G08650_at 9.39191707294346 9.63354613879903 9.7766966823781 9.58561604423672 9.63319575704167 9.6693380900664 8.77062953769724 8.87965236712356 9.35359965022027 9.02712088709793 9.09252075237928 8.7679059049991 9.11075804019715 9.04345899813736 8.87166657094273 8.94548584705492 8.71720123267506 9.00237284225402 9.15097902299296 0.101052413072786 0.101394331071777 0.103027784172923 0.101545259422505 0.107866238428733 0.103206396964738 0.104517983741264 0.099535591311792 0.109463661821783 0.105718346315073 0.103668186439028 0.103003264399683 0.0996007100104765 0.108835937544757 0.105465917561973 0.102453802540765 0.112902275670432 0.108718109561600 0.102681398024098 3 3 - 2624704 2625269 2624986.909 2624467 2627456 - gene protein_coding_gene FALSE TRUE AT3G08650.1|AT3G08650.2 metal transporter family protein similar to metal transporter family protein [Arabidopsis thaliana] (TAIR:AT3G20870.1); similar to putative divalent heavy-metal cations transporter [Thermus thermophilus HB27] (GB:YP_005311.1); similar to Zinc transporter and related ZIP domain-containing proteins (ISS) [Ostreococcus tauri] (GB:CAL49985.1); similar to Os05g0316100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055173.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.131981725549737 1.49862620571355 0.162410035920003 1 0.416417580759045 18.4781511914609 0.131981725549737 0.0568949050580419
AT4G28950_at 2.21058097865737 2.43893245571508 2.44032108793502 2.52484982132031 2.32438063029213 2.49055282955259 2.41191081251184 2.30031376033884 2.8553397731325 2.93832700495957 3.35833776405789 3.10698853813020 3.10045686838379 3.14896057603611 3.06722860169631 3.00472842467439 2.99117196505748 2.65052879611598 2.89382251273862 0.258998255206486 0.267139276556193 0.266262584259997 0.274331206653948 0.259033179709374 0.263560488091049 0.259022352762253 0.273649232568757 0.266355161084428 0.258244705539108 0.264773578691577 0.265061126048826 0.264695484407322 0.272298235188452 0.273556229561258 0.260186021198876 0.260808417681327 0.269947195038244 0.264605075607967 4 4|0 +|/ 14278864 14279682 14279252.222 14278000 14279990 + gene protein_coding_gene FALSE TRUE AT4G28950.1 ARAC7/ATROP9/RAC7/ROP9 (rho-related protein from plants 9); GTP binding A member of ROP GTPase gene family. Identical to Rac-like GTP-binding protein ARAC7 (GTPase protein ROP9) (ARAC7) [Arabidopsis Thaliana] (GB:O82480); similar to ARAC8/ATROP10/ROP10 (rho-related protein from plants 10), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT3G48040.1); similar to Small GTP-binding protein domain [Medicago truncatula] (GB:ABE93229.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.131156009314009 1.49856629266079 0.162425361163001 1 0.416343312639547 5.36742027473002 0.131156009314009 0.0545483578843029
AT2G47810_at 2.95202611791212 2.82237232710213 2.81001300282170 3.09526680886988 2.4631748151059 2.9747172066544 2.72514686587365 3.26509900650873 2.89308417395652 3.44769403989942 3.19047979637463 2.67866158181196 3.26184460414103 2.88183767386356 3.09271885927593 2.84319953532128 3.07365880461722 3.18463799078501 3.47425421756158 0.199673390641982 0.193100464787134 0.194032430400621 0.197774964213248 0.195180541204513 0.198712653527648 0.195756091561843 0.208145923283246 0.196263669011739 0.193100464787134 0.197286716953673 0.196725657603765 0.201230105515507 0.197991610532709 0.193100464787134 0.197818720485275 0.202406166577936 0.213788830188042 0.196777953805557 2 2 - 19590010 19590453 19590242.273 19589820 19590688 - gene protein_coding_gene FALSE TRUE AT2G47810.1 histone-like transcription factor (CBF/NF-Y) family protein Identical to Nuclear transcription factor Y subunit B-5 (AtNF-YB-5) (NFYB5) [Arabidopsis Thaliana] (GB:O82248); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) [Arabidopsis thaliana] (TAIR:AT5G47640.1); similar to putative HAP3-like transcriptional-activator [Oryza sativa (japonica cultivar-group)] (GB:BAB64190.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.175582871175766 -1.49805797641269 0.162555434196905 1 0.41571327975105 6.03725568531256 -0.175582871175766 0.139671707500602
AT4G07430_at 0.909720724930414 1.61755945883831 1.32630615081695 2.03894198809941 0.745223463941939 0.89706239711066 1.43117183665034 1.37364064265392 0.830592670773245 1.76359799881805 0.32158318165735 1.13776317137275 1.23932206101086 1.68513988570858 0.932760940754089 1.31156221651845 0.844539863111183 1.28198020410837 1.65003022718824 0.279673682223974 0.293016544089742 0.302795660341882 0.295222837888297 0.279673682223974 0.279673682223974 0.279673682223974 0.297740928315946 0.287661086973039 0.279673682223974 0.281925174812077 0.28345680540822 0.279673682223974 0.279673682223974 0.284732409957346 0.279673682223974 0.285560197754335 0.279673682223974 0.285409899910022 4 4 - 4222569 4223182 4223043 4222504 4223524 - gene protein_coding_gene FALSE TRUE AT4G07430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1); similar to Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABD33040.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.200774262086157 -1.49801115743675 0.162567419214003 1 0.415655256699394 2.5469892026086 -0.200774262086157 0.176078371752665
AT1G50760_at 3.24903933544968 2.96728342015325 3.25395999494879 3.09249844918289 2.86776962447093 3.23714457321538 2.74815653967587 3.08933062590692 3.25528619531882 2.7196574615829 3.1523658620759 3.1107838910458 2.71947310300637 3.0957040714842 3.41003630726999 3.37401875069685 3.12337239465503 3.54897536904961 2.97737813283143 0.168403838649413 0.172762725645729 0.169439059832573 0.17061531867571 0.17390751476581 0.167546930805732 0.177555920071990 0.177192828437789 0.179024920492892 0.171993775840612 0.168323195071073 0.168724701849467 0.172106224822284 0.171141395128304 0.170811678138088 0.166655240939509 0.166655240939509 0.177152614925622 0.179026468675429 1 1|0 -|/ 18818623 18818881 18818788 18818615 18818928 - gene protein_coding_gene FALSE TRUE AT1G50760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50790.1); similar to hypothetical protein [Oryza sativa] (GB:AAK50585.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97156.1); similar to Os03g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050500.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) 0.153562317787076 1.49785918849016 0.162606326428121 1 0.415466928482656 6.15112206132789 0.153562317787076 0.103586456430952
AT3G05820_at 2.07068854451838 2.14096701185585 2.24208720230498 2.06699224556322 2.23394219176882 2.42297166564896 2.46937886561372 2.06377259813811 2.74790379450541 2.48948895536061 2.39458460887941 2.21916139751338 2.15646798179132 1.95732852219086 2.29134208728449 2.42556460814989 2.58894206642974 2.34965939385633 2.68231692389183 0.178268963013661 0.174634445421473 0.169587512888095 0.170218614395182 0.175325569990762 0.171698897824636 0.171025890165394 0.169587512888095 0.176289945139255 0.170563755937067 0.172284428020092 0.171274294544781 0.176864098663848 0.177737058987464 0.175784598238522 0.172951942698622 0.178821755823014 0.173286415994002 0.169587512888095 3 3|0 -|/ 1733141 1733832 1733451.889 1732997 1735632 - gene protein_coding_gene FALSE TRUE AT3G05820.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G56560.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT5G22510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G06500.1); similar to invertase [Oryza sativa (indica cultivar-group)] (GB:AAO25633.1); similar to alkaline/neutral invertase [Lolium temulentum] (GB:CAA05869.1); similar to neutral invertase [Daucus carota] (GB:CAA76145.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.143362660017021 -1.49771036904306 0.162644435075308 1 0.415282514938866 4.68274231960044 -0.143362660017021 0.0840422105343176
AT1G54550_at 1.02883182991750 0.852986364944131 1.14337672082717 1.00776422698388 0.744719811907046 0.971808395512398 1.06930673858132 1.28052913880956 1.24434276957792 1.31829796362608 1.10705162533986 1.30225692817811 1.02419483494306 0.97370982463592 0.369389678937277 1.07460651276429 1.15079511135048 1.46231739969452 1.15023605589938 0.22581428149097 0.228706141200159 0.225689104404345 0.223452747340129 0.226931076663755 0.223945784294005 0.231364874626598 0.223427559698348 0.231702745120961 0.221127239324419 0.223545290597768 0.224320778674138 0.226641135936272 0.224486297814964 0.221127239324419 0.221638019125217 0.234468186798848 0.227250525625553 0.225627749637649 1 1 + 20373977 20374386 20374187.455 20373318 20374653 + gene protein_coding_gene FALSE TRUE AT1G54550.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G49510.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE89162.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.135290793071429 -1.49697126364973 0.162833813994195 1 0.414366803717779 2.16024832135949 -0.135290793071429 0.0660099776786037
AT3G12955_at 1.56044500870209 1.81449052166354 1.91594069060071 1.91267916220932 1.60645062933231 1.56732678879034 1.59126227447217 2.07602695710944 1.54610172529522 1.86574745671332 1.23370439107373 1.51065641680730 1.36663888613987 1.52602133110774 1.67422657686368 1.59651212130387 2.14296426413849 1.76882521579963 2.25841598750555 0.19412788861035 0.200206105503755 0.19412788861035 0.197676356981224 0.195157263479285 0.19412788861035 0.194813422474635 0.196684183243969 0.216639849609140 0.203878877162422 0.205619207927687 0.19412788861035 0.200521394950740 0.199319540450036 0.195576749323816 0.196577572409806 0.197180922008799 0.20097345138845 0.19412788861035 3 3 - 4135727 4136015 4135894.364 4135507 4136150 - gene protein_coding_gene FALSE TRUE AT3G12955.1 auxin-responsive protein-related similar to auxin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G72430.1); similar to Os08g0452500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061954.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.148800806093691 -1.49696490193236 0.162835444863073 1 0.414358923131425 3.50184377423115 -0.148800806093691 0.0949559680787183
AT1G31290_at 1.23779795053176 1.43438403893096 1.25580644753895 1.15063043035965 0.924581352515676 1.06583123809120 1.09653357340575 0.762427892730143 0.88038145765297 0.899388811988525 0.914297757968142 0.697615173997104 0.479956142208514 0.60561908617151 0.645399268627663 0.615389699003732 0.589538530692014 1.23541356049101 1.11901671172199 0.173477365675750 0.173893457572399 0.180675929398561 0.178486011220011 0.173477365675750 0.179554945518789 0.173477365675750 0.179593295561460 0.188667204574492 0.18348618391885 0.176818439318238 0.185597979741503 0.178059911045638 0.177267305320049 0.180227222204514 0.179745855620618 0.173477365675750 0.178455670209584 0.186834561872759 1 1 + 11191774 11192249 11192041.273 11188274 11192298 + gene protein_coding_gene FALSE TRUE AT1G31290.1 PAZ domain-containing protein / piwi domain-containing protein similar to AGO2 (ARGONAUTE 2) [Arabidopsis thaliana] (TAIR:AT1G31280.1); similar to Os04g0615700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053871.1); similar to H0525G02.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86307.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) -0.138466085749743 -1.49643689506809 0.162970851988030 1 0.413704927331950 1.96058210527107 -0.138466085749743 0.0736827295411403
AT2G37110_at 9.60363441509865 9.60153435288136 9.7666394009779 9.51735243131416 9.5043673244022 9.35014736419856 8.92420320593706 8.85738681508786 9.00757260162082 8.62452270006823 8.74709081277134 8.77551265703748 8.48159429803194 8.88304567635789 8.84274249105124 8.52118629802744 8.47174537881361 8.8373309479782 8.53637540762518 0.150130960972794 0.146822736636804 0.148767511764515 0.153856747705273 0.147686431752209 0.147225861888491 0.143742762647170 0.147503532044847 0.153888061607359 0.156197919910598 0.144092691942182 0.144953570014119 0.145422491456938 0.153351949610829 0.140849797746364 0.152954316682895 0.166189424827910 0.153544614421111 0.158185363216994 2 2 + 15599915 15600749 15600367.182 15599631 15601072 + gene protein_coding_gene FALSE TRUE AT2G37110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40935.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE78316.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.130072216604605 1.49584572518717 0.163122572244715 1 0.412972869332646 18.0995854836272 0.130072216604605 0.0520306710864399
AT1G21140_at 3.15863748283809 3.34808892634237 4.42970826935926 4.14419807432803 3.39114935776312 3.35306841342369 5.64768840035589 4.89259909386984 3.89813557203858 4.18920398804545 4.86076790708051 3.85122984095217 4.20932881372624 3.99510536358571 3.57671894841475 3.57293694119478 4.27186255792173 4.51974703995769 4.00523827790007 0.200244784994051 0.198315329527887 0.207892479999431 0.203739734826041 0.203488327742237 0.200131997118208 0.206003736718823 0.215304808958448 0.200386446073580 0.201730400766080 0.195379976841162 0.202251395039859 0.195240040328218 0.203867192273297 0.197768509200565 0.195180105880011 0.195180105880011 0.198499556722423 0.199884702522555 1 1 + 7404598 7405004 7404825.455 7404372 7405270 + gene protein_coding_gene FALSE TRUE AT1G21140.1 nodulin, putative similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43630.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) -0.177934774928430 -1.49574787446551 0.163147696777809 1 0.412851716305455 8.11467798025115 -0.177934774928430 0.143647665658297
AT2G18190_at 1.91673733995895 1.42223536167353 1.98860249785946 2.07656975885968 1.60523535349522 1.91006102452603 1.95441611452637 2.24030016088281 2.14279210854628 2.22669911651348 1.49460716083030 1.78196724973828 2.14985232893209 1.78646840424843 1.98722208919668 1.5443620439388 1.70824374399422 2.41107682387979 2.19168636056237 0.21168697625422 0.216746999082136 0.228600338003789 0.220133746492581 0.21716502278069 0.218559199070842 0.218279321793983 0.216873903027608 0.222364490519463 0.214936726834200 0.214274809482513 0.215793640932742 0.215021801933524 0.215570195982708 0.21168697625422 0.217303718932152 0.214396718946162 0.226154820658261 0.224955345050577 2 2|0 -|/ 7921440 7922019 7921638.4 7921387 7922954 - gene protein_coding_gene FALSE TRUE AT2G18190.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT2G18193.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.158694650093935 -1.49511825984243 0.163309438760774 1 0.412072283752551 3.91178678937386 -0.158694650093935 0.113072230636535
AT3G13540_at 1.39684428735883 1.20968268440154 1.04667092144999 1.23685770588346 1.12226103336546 1.33353742437939 1.25870566338694 1.38602686412077 1.86909493960278 1.29398045553213 1.11334504137587 1.4174296183239 1.14494731747435 1.93781840536530 1.5673739010385 1.20351581107209 1.40545085723816 1.06852775532673 1.32821932774443 0.189328206383264 0.187673615478698 0.187397750218406 0.184182310111478 0.185263272960426 0.185165152679686 0.18348449274482 0.186041651514477 0.187904771876721 0.198703393135542 0.18348449274482 0.187737111074715 0.188727113030003 0.190435416947139 0.18348449274482 0.185463836997625 0.18348449274482 0.190070994359326 0.18825413358234 3 3|0 +|/ 4420431 4421412 4421020.3 4420180 4421708 + gene protein_coding_gene FALSE TRUE AT3G13540.1 ATMYB5 (myb domain protein 5); DNA binding / transcription factor myb-like gene that may act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers similar to AtMYB17 (myb domain protein 17), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61250.1); similar to BNLGHi233 [Gossypium hirsutum] (GB:AAK19611.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.133890128052681 -1.49508462454157 0.163318083229911 1 0.412030650686543 2.67602298772412 -0.133890128052681 0.0628855218526867
AT1G17860_at 6.3853915930918 6.94019854749137 5.20481000870948 5.39709639856499 5.39335469976022 5.46373264123353 4.12671165869153 4.32905094052445 4.56093554873844 4.00305618913149 4.67000184538109 5.7577598421965 4.42032016047082 4.87997663781123 5.11560730235109 4.13445683961241 4.01454670076784 4.90999653309009 4.47333402801628 0.252206082171172 0.268168946890361 0.251599005186693 0.268962558684082 0.249439775325643 0.264457217897840 0.264376839489857 0.255679975889759 0.268952845966671 0.250230963528889 0.256860769599850 0.250764075522980 0.24928726768096 0.261801583064327 0.25354030368096 0.2578851776429 0.273306825292673 0.259825162074306 0.24928726768096 1 1 + 6149375 6149801 6149540.455 6149294 6150031 + gene protein_coding_gene FALSE TRUE AT1G17860.1 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1); contains InterPro domain Proteinase inhibitor I3, Kunitz legume; (InterPro:IPR002160); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) 0.155734114765999 1.49391659610518 0.163618517725812 1 0.410585255789744 9.94684755501119 0.155734114765999 0.108166647782405
AT1G02410_at 7.87704380154247 8.20410899396405 7.85999892082344 8.09123167251082 8.05608226449015 7.92027201968578 8.15173035978499 8.02861778435889 7.28931273719519 7.35573197661641 7.62089039217438 7.82543345278633 7.32302450476464 8.05648108424521 7.59106590520023 7.75556884533159 7.70222063619987 7.54427533880343 7.30047340572992 0.192233668628993 0.182826519089864 0.187662197698684 0.184671592335416 0.180039604160362 0.181963783067495 0.186071677492704 0.191861878045542 0.191283664788205 0.185225925127516 0.184256015401664 0.188541530118917 0.194068930402895 0.186858389222344 0.194183723162626 0.181614648970523 0.185442632520222 0.198034131718864 0.188903356196897 1 1|0 +|/ 491678 492728 491917.571 490925 492912 + gene protein_coding_gene FALSE TRUE AT1G02410.1 cytochrome c oxidase assembly protein CtaG / Cox11 family similar to Os03g0718600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051089.1); similar to Cytochrome c oxidase assembly protein CtaG / Cox11, putative [Medicago truncatula] (GB:ABE90151.1); contains InterPro domain Cytochrome c oxidase assembly protein CtaG/Cox11; (InterPro:IPR007533) 0.139359148944657 1.49388771740136 0.163625951782940 1 0.410549528408285 15.5199070903711 0.139359148944657 0.0762307963392536
AT2G43870_at 1.09806469515326 1.03924163558927 1.63888458724608 1.28308730773564 0.914489835743379 0.962385821964986 1.23545638933730 0.804863037077068 1.09476689736765 1.20293733415604 1.11418749947261 1.35569712707503 0.938911849599113 1.16440175581406 1.56023207523659 1.06590898271551 1.33891432069566 1.47804676358052 1.02516056153855 0.193170632235033 0.193418548095777 0.201343183496314 0.196251851255501 0.201724271782413 0.192083343377682 0.195480735813191 0.193014237085019 0.200154738594073 0.202368425185444 0.19807908630257 0.193930980329903 0.200886335198402 0.192733202431280 0.192359949200459 0.200834664056491 0.197923116229067 0.200937231454814 0.192083808236205 2 2|0 -|/ 18173727 18174423 18174088.7 18173692 18175341 - gene protein_coding_gene FALSE TRUE AT2G43870.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G59850.1); similar to polygalacturonase [Pyrus communis] (GB:CAH18935.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.149860698984762 1.49381092065575 0.163645722484228 1 0.41045452118526 2.30188873596140 0.149860698984762 0.097550733928141
AT3G19290_at 7.46405768219193 7.72370952665622 7.66684253198015 7.75839869670633 8.46534901365775 8.28380362625088 7.5044327782705 7.34227920822536 6.98086074761291 6.88393294828911 6.94208700466835 6.41413757193977 7.07616136588248 6.62433076730132 5.92835517005305 7.07316019571187 7.24138877099963 6.73413786235219 7.19909960063324 0.176373900067195 0.170671955454791 0.174638739055749 0.170671955454791 0.173735558058774 0.171822623505149 0.177892682773474 0.171997389263484 0.178198133801375 0.178706199095650 0.177708267768165 0.184960302520662 0.172335886285009 0.17517664380153 0.184660893764443 0.170671955454791 0.177707127592298 0.182694474617954 0.173435736706551 3 3 + 6688661 6689765 6688999.273 6687146 6690129 + gene protein_coding_gene FALSE TRUE AT3G19290.1 ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. similar to ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT1G49720.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.133950370707304 1.49268153786399 0.163936710379427 1 0.409057688464806 14.6638679350551 0.133950370707304 0.063597087348996
AT2G03240_at 2.33970265462168 2.27107646251961 2.47739256424136 2.43193710489853 3.40188351812131 2.55146686993935 2.91529404995063 2.95529485115574 3.26604377683878 2.46012917413638 3.4621903842352 3.21835117001491 3.13931155675836 3.5876647908835 2.63659922041823 3.0055719481247 2.70175653255850 2.85543996849253 2.70465665336855 0.242985669874985 0.239879878291804 0.239285333025044 0.24056083015889 0.240465830222868 0.239301395667976 0.248721517468429 0.241287433718773 0.245691547473835 0.241746000070913 0.237404691940012 0.237340406741051 0.241470155417792 0.237340406741051 0.237433875346574 0.239463126659069 0.24377614623571 0.238771552104473 0.239593643000152 2 2|0 -|/ 973919 974529 974155.4 973410 977334 - gene protein_coding_gene FALSE TRUE AT2G03240.1 EXS family protein / ERD1/XPR1/SYG1 family protein similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03260.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) 0.180456085696362 1.49243329111982 0.164000731317272 1 0.408750743570885 5.61107462503951 0.180456085696362 0.148018328021511
AT1G67040_at 1.15466021983740 1.17730326763064 0.723874260051681 0.98460978396544 1.00634076594595 1.01211826091656 1.25936528918621 1.44662998739289 2.05915699769750 1.58103510460869 2.72206179455940 3.44866124065511 2.10636020195255 2.83734210242075 2.68085140174270 2.27236830736132 1.32710555727578 2.41985591754788 2.02106284229618 0.193908604658084 0.190250159631208 0.192406683261512 0.200628082794615 0.196209687013707 0.190080144463052 0.188918367987774 0.189945145605996 0.191418400452202 0.191087381741824 0.188918367987774 0.194755998375506 0.194343700426098 0.188918367987774 0.201250819101922 0.189007402468652 0.196969643611163 0.195227437612186 0.191120799346096 1 1 - 25022772 25023242 25023083.455 25022768 25025585 - gene protein_coding_gene FALSE TRUE AT1G67040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26910.2); similar to Os03g0302900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049873.1) 0.130993455306717 1.49216873207069 0.164068982741756 1 0.408423664770599 3.27756812785263 0.130993455306717 0.0557002634174983
AT2G17180_at 1.85538782525424 1.89451842011841 1.72327056335093 1.88737087570078 1.58003358675547 1.57372133214579 1.79572584346186 1.80740675382667 1.95731725935544 2.14705552199627 2.02602299487482 1.81889289042532 1.77789907539502 1.94820951201644 2.29995519345651 1.89066362903265 2.14763442156576 2.12994813180101 2.21128568469174 0.205688800066047 0.202292951871082 0.204438482950270 0.202292951871082 0.215389876753391 0.202292951871082 0.223716517703880 0.205545688237351 0.209894562851205 0.210769774459387 0.205707642583606 0.213905068317317 0.208646654447093 0.209921196850672 0.206147198327442 0.202292951871082 0.209418010566066 0.224865485375177 0.211444194495214 2 2 - 7483949 7484483 7484271.182 7483917 7484729 - gene protein_coding_gene FALSE TRUE AT2G17180.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G35280.1); similar to PEThy;ZPT4-1 [Petunia x hybrida] (GB:BAA19114.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.123738439393632 -1.49165228558476 0.164202286933143 1 0.407785278745244 3.81974075995281 -0.123738439393632 0.0292848193848531
AT1G75470_at 1.08680671341605 0.811793078856054 0.91905875687008 1.57097142560277 1.09712376065842 1.05566060071483 1.12518764557941 1.22653748648947 0.976198235199814 0.750414489829054 0.681299773378571 0.940844458685042 1.09072811240007 1.55196510057276 1.24104908150664 1.35528408866850 1.26649166543496 0.97937222271111 0.99404870829116 0.217661216999277 0.219835494265460 0.225010429614532 0.225492130884778 0.218893009528890 0.224307563648416 0.221471528992828 0.222302573245887 0.230824507346982 0.220752413958088 0.226769943539272 0.220210195516742 0.217661216999277 0.217661216999277 0.217661216999277 0.221275911605148 0.230814920016101 0.223376817543228 0.221367697569116 1 1 + 28334434 28334931 28334700.3 28333733 28334961 + gene protein_coding_gene FALSE TRUE AT1G75470.1 ATPUP15 (Arabidopsis thaliana purine permease 15); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP14 (Arabidopsis thaliana purine permease 14), purine transporter [Arabidopsis thaliana] (TAIR:AT1G19770.1); similar to Os02g0689200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047783.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD07671.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.164807286677988 1.49151316328931 0.164238212837696 1 0.407613331768671 2.13427566220324 0.164807286677988 0.123902016514799
AT1G05040_at 0.73464449757743 0.893206599291808 1.42027353585967 1.82170352155972 0.949779102115746 1.02285251263316 1.08277721453379 0.98008947118799 1.44181948341592 1.43046060617406 1.16308673017425 1.81691499086014 1.02037279095983 1.30506178246382 1.21330603452343 1.13191424698787 1.63781275705008 1.01395153585480 1.29496218642548 0.209646819832412 0.206131162504079 0.208247936193025 0.210080163880129 0.212752274281963 0.213519297797286 0.216188596181362 0.208935001855837 0.209139950701707 0.213709839785221 0.207174747659875 0.210167668043271 0.206131162504079 0.209795752738633 0.212306698465383 0.206131162504079 0.21066778564288 0.211169893362695 0.206131162504079 1 1|0 -|/ 1447761 1448411 1448144.556 1447368 1448447 - gene protein_coding_gene FALSE TRUE AT1G05040.1 similar to ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G33010.1); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.139847286165887 1.49146902556355 0.164249612047238 1 0.407558782250669 2.45160749048546 0.139847286165887 0.077811594690002
AT4G12760_at 6.41758155364452 7.03828492890387 7.09119494893257 7.10810578784629 7.51902727711352 7.16638376076324 6.74312280279436 6.44156222077892 6.15272083615345 6.20691088548687 6.19560143362295 6.41913076996332 5.6318571915879 6.55049570354344 5.53782408164244 6.57486681577549 6.27219185933602 6.09362603269935 6.77454555812376 0.223492739203444 0.206849787306341 0.212192311868450 0.211620619400951 0.210856967021942 0.213669992036706 0.216012265359544 0.211601655072446 0.213527639517176 0.223690083092441 0.206232653007012 0.207500318862555 0.217114550644225 0.224731349374315 0.236270307901072 0.207425294399088 0.223358842197005 0.21564426793257 0.217553973086965 4 4 + 7505275 7506000 7505730.909 7504873 7506088 + gene protein_coding_gene FALSE TRUE AT4G12760.1 similar to Os05g0417300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055562.1) 0.17121510495008 1.49131099171688 0.164290432165206 1 0.407363477641599 13.2094120747352 0.17121510495008 0.134143028882807
AT1G62850_at 5.95952897405713 6.23415728153503 6.32807041845752 6.31518892652323 6.46427155484141 5.9615905117207 6.52536736219415 6.8473597430129 6.20107268094213 6.2433349319134 6.91409651340317 6.58202123209494 6.23575564497885 6.93540078762953 6.71575938151501 6.85500294167996 6.07088981889911 6.3145192314883 5.96449478406247 0.154537966048816 0.152119632970902 0.153512911615643 0.159433508959417 0.154134437808447 0.157586684184856 0.158260165396883 0.155387844404711 0.156848452192604 0.155847323391098 0.158104258663358 0.156030605114902 0.153214200038600 0.158318237814096 0.154223917560977 0.154270737979755 0.162899890605937 0.15597315314936 0.156687669813647 1 1|0 -|/ 23276274 23277047 23276622.875 23275368 23277967 - gene protein_coding_gene FALSE TRUE AT1G62850.2|AT1G62850.3 translation release factor similar to Os03g0249200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049558.1); similar to Predicted peptidyl-tRNA hydrolase (ISS) [Ostreococcus tauri] (GB:CAL57051.1); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352) 0.15865345383718 1.4910663952578 0.164353628591062 1 0.407061221225804 12.6865575930096 0.15865345383718 0.113737071060001
AT2G34510_at 8.23606275719908 8.5920806711669 6.87232357844565 6.74868642021953 8.5226323570945 8.34917525975798 7.69133442713717 7.9458550000789 9.0862474524773 7.96853465307431 9.49025767971553 9.2151358888346 8.9312237228991 8.90180245224094 9.12694926272004 8.18924220639202 6.8279159290932 8.79083789760916 8.37505646634776 0.211199937886452 0.200095995727736 0.212542259708765 0.207456133418767 0.193910862988701 0.211620396650901 0.198720169401381 0.201808001777266 0.218088453035765 0.203759192994209 0.199044180390490 0.199169506923126 0.192895626265939 0.207377271961300 0.200219205640037 0.204291363669993 0.243225727253439 0.203601273335885 0.196374191456664 2 2 - 14551196 14551695 14551484.455 14551076 14553958 - gene protein_coding_gene FALSE TRUE AT2G34510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29980.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); similar to Os01g0756600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044289.1); similar to Os01g0531400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043243.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.142785518688910 -1.49073455284456 0.164439400181107 1 0.406651201983102 16.4501605525064 -0.142785518688910 0.084230344659701
AT2G46610_at 3.67242406347041 3.66044810066729 4.07204186213398 3.76917083220091 3.94401891594085 3.41090127763079 3.52522662643354 3.69907277365673 3.77031698407644 3.99499599459432 3.24371582575698 3.04027105904103 3.04955484437754 3.32312428039658 3.23764324541203 3.73469447607849 4.00776327584679 3.92222618453428 3.98808232815016 0.204409782564664 0.193106072843377 0.194697818010809 0.200888882538471 0.193106072843377 0.213229824212630 0.196604215798255 0.205993399499620 0.208599989248663 0.201956972431097 0.196389687773529 0.198748170313215 0.209900260826179 0.195179061030977 0.196787393005182 0.194832220923528 0.205505613965584 0.210422699257455 0.197369470732207 2 0|2 /|- 19143845 19144499 19144121.556 19143637 19145832 - gene protein_coding_gene FALSE TRUE AT2G46610.1|AT2G46610.2 arginine/serine-rich splicing factor, putative similar to ATRSP31 (ARGININE/SERINE-RICH SPLICING FACTOR 31), RNA binding [Arabidopsis thaliana] (TAIR:AT3G61860.1); similar to ar (GB:AAT37136.1); similar to Os04g0118900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052061.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to ATRSP31 (ARGININE/SERINE-RICH SPLICING FACTOR 31), RNA binding [Arabidopsis thaliana] (TAIR:AT3G61860.1); similar to ar (GB:AAT37136.1); similar to Os04g0118900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052061.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.156591977878432 -1.49039100360362 0.164528238186224 1 0.406226778703674 7.40049934878553 -0.156591977878432 0.110309444148577
AT3G47590_at 7.79515201537833 8.08117345993902 7.96807141815022 7.92894514097171 8.55344614483776 7.88719275708385 8.47343407904919 8.29578738352408 7.77972126523304 8.06054053512131 8.57402806885777 8.46091766388894 8.29639432467884 8.25630168254487 7.96175048712716 8.13955218249392 7.94735958547674 8.2749393941479 7.63718902700852 0.179256085561743 0.179599646850755 0.188656612008861 0.184301945142201 0.179354031167024 0.180941079516888 0.177963744864922 0.179141423779730 0.181762634552699 0.179567112625846 0.183024677902863 0.174192920831887 0.184481263070252 0.182074029338978 0.180605044459923 0.179238218125192 0.189618558969063 0.183531783118881 0.186107353234716 3 3 - 17547162 17547759 17547501.455 17546744 17548515 - gene protein_coding_gene FALSE TRUE AT3G47590.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G29840.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.168057805992981 1.49022237652556 0.164571858363648 1 0.406018478173721 16.1552614829199 0.168057805992981 0.129362390292781
AT1G29570_at 2.5959441392161 2.52419126029626 2.46047535869002 2.47069480513052 2.36530788623301 2.36677988380391 2.29231754816049 2.62048345312791 2.93163485619864 2.96940870296024 2.68706530523142 2.77419836091412 2.63974079214672 2.10272890080117 2.56046365157921 2.39826668023076 3.18637552898524 3.13746107044711 2.6692170564904 0.178861203086378 0.178601073471269 0.173128297446317 0.172440964807309 0.176568224456258 0.174799785161224 0.179466451181193 0.179033569290875 0.191740175540966 0.182147647026484 0.181998822639962 0.175084556377963 0.176557561349218 0.185130221006565 0.183553764969193 0.172358467669957 0.193722045710301 0.191379797283351 0.172380222994692 1 0|1 /|+ 10337023 10337781 10337409.857 10335896 10337840 + gene protein_coding_gene FALSE TRUE AT1G29570.1 zinc finger protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29560.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001066623.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.131692809496808 -1.49021516895510 0.164573723027742 1 0.406009575186123 5.23329482925314 -0.131692809496808 0.0581597413604931
AT3G45060_at 1.69472878972728 2.13099536318394 2.41873964333024 2.16561988903271 2.75758213343634 2.04826582721528 2.20073853958990 1.93394997279529 2.60385464445313 2.46666953264672 2.20611491238862 2.51302610341592 2.35703793173374 2.16444754266978 2.16289412842406 2.36888278745634 2.01380488928232 2.56057380035695 1.76191184405082 0.239885530666824 0.243395924598929 0.245443464190091 0.248945660782563 0.246389361678733 0.242483558052705 0.243387273127324 0.24427992526126 0.255860457877016 0.253190015698260 0.241765173579458 0.246436451704992 0.243383472096157 0.248597193843995 0.246512255268592 0.241507341934309 0.249884463225983 0.252042938967198 0.249953112442811 3 3 - 16488658 16489219 16488992.182 16488546 16490467 - gene protein_coding_gene FALSE TRUE AT3G45060.1 ATNRT2.6 (Arabidopsis thaliana high affinity nitrate transporter 2.6); nitrate transporter member of High affinity nitrate transporter family similar to ATNRT2.3 (Arabidopsis thaliana high affinity nitrate transporter 2.3), nitrate transporter [Arabidopsis thaliana] (TAIR:AT5G60780.1); similar to ATNRT2:1 (Arabidopsis thaliana high affinity nitrate transporter 2.1), nitrate transporter [Arabidopsis thaliana] (TAIR:AT1G08090.1); similar to ATNRT2.4 (Arabidopsis thaliana high affinity nitrate transporter 2.4), nitrate transporter [Arabidopsis thaliana] (TAIR:AT5G60770.1); similar to putative high affinity nitrate transporter; GmNRT2 [Glycine max] (GB:AAC09320.1); similar to high-affinity nitrate transporter [Prunus persica] (GB:BAD04063.1); similar to high-affinity nitrate transporter [Prunus persica] (GB:BAD02939.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.186658897589308 1.49020341635519 0.164576763571284 1 0.405995058112548 4.4542407376303 0.186658897589308 0.157537154925604
AT2G31830_at 1.71913811040658 1.43572852587234 1.77509558667161 1.68737666381102 1.5802532468032 1.64701432044262 2.04359930831574 1.93639930300341 1.82314200689079 2.17239446804801 1.90403708622953 1.52619507858898 1.60517084146959 1.65382067502770 1.83961450069708 1.64772245194376 1.94826113694563 1.79401136680771 1.67519221177941 0.198246425843687 0.195078178550014 0.194241180473621 0.199372095346297 0.200764963916918 0.194615002634522 0.194660546605551 0.194083115145931 0.194083115145931 0.196107996960337 0.206808685068942 0.195049887493737 0.198083908670013 0.199614036642583 0.201245999797763 0.194083115145931 0.199791937674649 0.203082181854456 0.198015499783599 2 2|0 -|/ 13539985 13540592 13540226.7 13539853 13544818 - gene protein_coding_gene FALSE TRUE AT2G31830.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G43900.1); similar to 5PTASE13/AT5PTASE13, inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G05630.2); similar to FRA3 (FRAGILE FIBER3), inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G65580.1); similar to Os09g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063577.1); similar to Inositol polyphosphate related phosphatase; PapD-like; WD40-like [Medicago truncatula] (GB:ABE79233.1); similar to Os08g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062285.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.130835055413197 -1.4899735118237 0.164636252441206 1 0.405711089457155 3.54312415205906 -0.130835055413197 0.0557989220944513
AT1G68600_at 10.2224393870910 10.4780725872418 10.5439885224886 10.5245568565744 10.5218681532359 10.0458895157622 11.2439497297711 11.0168823684512 9.5370022406169 10.6105828869978 10.8983488187888 10.6648732315825 11.0080730445305 10.7243973188831 10.4198452052988 11.2631776285979 10.6184289771490 10.6635051001675 10.2969040846439 0.104345371565188 0.104490937953632 0.103758643776030 0.104729739740190 0.110282934199197 0.114208409965207 0.105122341497714 0.108037209418524 0.123516434782624 0.103758643776030 0.103758643776030 0.103758643776030 0.106344525693526 0.103872417371781 0.105205973824272 0.106449527516313 0.115075355271782 0.108730985487769 0.105432434646010 1 1 + 25765843 25766408 25766163.727 25763505 25766597 + gene protein_coding_gene FALSE TRUE AT1G68600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17470.1); similar to Putative expressed protein [Brassica oleracea] (GB:AAW81734.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.151578919374176 1.48983263149534 0.164672715016304 1 0.405537093531115 21.0400780082658 0.151578919374176 0.101475744799561
AFFX-r2-Ec-bioB-M_at 7.6248419577409 8.084007237792 8.67108948421615 8.3910380869804 7.71807015293877 8.08886836923033 7.86543275269327 8.11513591428013 1.44695637309878 1.55034965048144 1.46612150674757 1.32375344686863 1.51735091456301 1.26630842054660 1.75573135403682 1.59977558918180 1.80607808918745 1.35707527865668 1.44497293692957 0.244996124799358 0.238557806609354 0.237682980183173 0.240727163840385 0.250018349850528 0.247114595896044 0.249494434509143 0.241195331448957 0.240832362449268 0.249591863321345 0.240609915550904 0.248747702227512 0.239122632069235 0.244042705165699 0.234688468857538 0.238834825100962 0.240084695630495 0.234688468857538 0.244974957415717 NA NA NA NA NA FALSE FALSE 0.162838364592574 1.48956662922217 0.16474158051654 1 0.405208592612262 9.56595248372241 0.162838364592574 0.121027524035838
AT4G28910_at 8.58587082498106 8.7645676875303 8.58308781450432 8.5739393089236 8.82700826856662 8.64652074431747 8.44444115508105 8.57699602140482 8.0766306329446 8.25863271955725 8.43306435903932 8.22095277829427 8.14999305162648 8.26867208136962 8.43319747147233 8.34859958846839 8.39312554227617 8.38319072635001 8.0729243514049 0.116527838067606 0.109873209263477 0.109487058458732 0.105692794161476 0.113241436721532 0.113363499252587 0.111436519953330 0.110506075843914 0.121745728998516 0.111016286450362 0.111982572695100 0.112257875636166 0.118700541264637 0.110647468373530 0.116206413461207 0.105692794161476 0.114783567454791 0.108813954823583 0.119690579624876 4 4 - 14264341 14264977 14264663.909 14264073 14266755 - gene protein_coding_gene FALSE TRUE AT4G28910.1|AT4G28910.2|AT4G28910.3 similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G07250.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84658.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 0.128728496860927 1.48934710682195 0.164798431454648 1 0.40493752018676 16.8577599870791 0.128728496860927 0.0496044833901354
AT2G27550_at 2.32668989682149 2.23221880054113 2.63137727915588 2.72630666219245 2.3493547427184 2.63603974572669 2.50081178599152 2.14850132842635 2.97803281068712 2.79197521090975 2.67233361160895 2.55054598392974 3.03894427291479 3.02848599133822 2.85025555801539 2.64747124940236 3.03479917197309 2.77970087269105 2.70807435401473 0.200000593522585 0.202472424884840 0.208702231314877 0.200065176017071 0.198671163393651 0.201061104848333 0.200147658082864 0.200117587050571 0.212339572332228 0.206729375544067 0.207926785664451 0.200031599205337 0.214393549575028 0.203906179090486 0.200871989573310 0.198136958356210 0.202718805385423 0.200283611041016 0.205927769713366 2 2|0 +|/ 11780505 11781546 11781213.5 11780328 11781758 + gene protein_coding_gene FALSE TRUE AT2G27550.1 ATC (ARABIDOPSIS THALIANA CENTRORADIALIS); phosphatidylethanolamine binding encodes a protein similar to TFL1. overexpression leads to similar phenotype as TFL1 overexpression. expressed specifically in the hypocotyl and null mutation does not result in phenotypes exhibited by TFL1 null mutations. Identical to Protein CENTRORADIALIS-like (CEN) [Arabidopsis Thaliana] (GB:Q9ZNV5); similar to TFL1 (TERMINAL FLOWER 1), phosphatidylethanolamine binding [Arabidopsis thaliana] (TAIR:AT5G03840.1); similar to flowering locus T like protein [Populus nigra] (GB:BAD22601.1); contains InterPro domain Phosphatidylethanolamine-binding protein; (InterPro:IPR001858); contains InterPro domain PEBP; (InterPro:IPR008914) 0.141501892475116 1.48868050240246 0.16497116906502 1 0.404114533157934 5.26958480395744 0.141501892475116 0.0819496199471489
AT3G48510_at 2.14460916270435 2.00791235803206 2.56735459295218 2.51428970690155 2.17361766348521 2.60867884786188 2.17707043386607 2.11203248526671 2.40850452929868 2.22518273480570 1.97950995192403 1.96108000748291 2.39209632696017 1.99868861320982 2.14436374451699 2.21862768853191 2.32368401012195 2.31257574690927 2.08781770665114 0.202140192600341 0.193740622210365 0.197456784935279 0.193740622210365 0.20003750842228 0.194672266399873 0.200521299966867 0.212166265383822 0.195794439223136 0.199912458000913 0.194999145026119 0.193740622210365 0.197351330471725 0.196359736556938 0.195224486195246 0.198732945589983 0.203740463751072 0.196432100079917 0.202219514149917 3 3 - 17978558 17979117 17978791.455 17978341 17979523 - gene protein_coding_gene FALSE TRUE AT3G48510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G63350.1); similar to hypothetical protein MtrDRAFT_AC135505g13v1 [Medicago truncatula] (GB:ABE82027.1) 0.140702848560764 1.48867589333877 0.164972363955947 1 0.40410884363829 4.49161061544657 0.140702848560764 0.0802440252133436
AT1G76280_at 2.52231579862623 2.95771821731599 2.65175770234356 2.82724415933315 2.73531418015635 2.86490088582237 3.29472399917382 2.95612009757720 3.0296293393345 2.80469845031037 2.46957491066694 2.70327449345144 2.55243983898998 2.45606688707261 2.64350797053504 3.03498979491959 2.90541239249486 2.67471161040886 2.62920719713946 0.235341026128515 0.230870719237890 0.230982794922375 0.23077802008558 0.228425113187327 0.236029654022051 0.23518904238525 0.239845392760415 0.235749508217350 0.232863951026728 0.228425113187327 0.228425113187327 0.228701349424355 0.228425113187327 0.233256947066279 0.228425113187327 0.239305535321739 0.233383163751347 0.23622551960273 1 1 - 28622844 28623745 28623346.8 28622545 28627625 - gene protein_coding_gene FALSE TRUE AT1G76280.1|AT1G76280.2 pentatricopeptide (PPR) repeat-containing protein|binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G31400.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE90374.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G18940.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE90374.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.152048193935076 -1.48814743797574 0.165109414315488 1 0.403456581741293 5.60184966316635 -0.152048193935076 0.102645792039211
AT4G22830_at 5.35859376199738 5.12058625006045 4.92768112630976 5.1927208518425 4.89095820300711 5.08025587977528 5.84792552951576 5.64893761915461 5.59503848449894 5.25441294503799 5.73144195556406 6.03518396642415 5.66537673686202 6.01879135612590 6.34975001357021 5.78787417431691 5.19954993690314 5.88851243945991 4.4036508408676 0.238224409478066 0.244834192789465 0.247264692516696 0.239208543384139 0.242097879089175 0.250037463453181 0.250004940744327 0.251806040428500 0.261120367057236 0.255958195647700 0.237824128706734 0.237824128706734 0.250913214488287 0.246834925735887 0.243341024737684 0.237848748759215 0.258852704290364 0.244505500818018 0.243721342008661 4 4 - 11991059 11991312 11991172.222 11990149 11991385 - gene protein_coding_gene FALSE TRUE AT4G22830.1 similar to hypothetical protein sll0608 [Synechocystis sp. PCC 6803] (GB:NP_442291.1); similar to Os04g0379400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052589.1); similar to OSJNBb0089B03.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE03987.1) 0.139542936993363 1.48808250456566 0.165126260984800 1 0.403376445838229 10.7179211506436 0.139542936993363 0.0778406400524382
AT3G62170_at 1.99356004368487 1.67676917831531 2.14583833779659 2.00328159155454 1.51404093100217 1.77276621728502 1.68607660688224 1.80965853308546 3.04340587745636 2.22507299861263 2.31791891754371 2.1071845661613 2.05077029852532 2.08940310923648 1.94156543046729 2.17591174636771 1.83697711996553 2.49112863886419 2.15046548443618 0.206297989096765 0.207997667230538 0.205763159777764 0.204846924530255 0.19985147452252 0.211962959312049 0.20919321973909 0.208246689065945 0.206431679121473 0.201856508585749 0.21241212634105 0.203189669609491 0.201318239316940 0.210771884886821 0.19985147452252 0.207576678144053 0.207046526536376 0.204101117453478 0.206696986397919 3 3 - 23027470 23028038 23027733.455 23027198 23029484 - gene protein_coding_gene FALSE TRUE AT3G62170.1 VGDH2 (VANGUARD 1 HOMOLOG 2); pectinesterase Identical to Probable pectinesterase VGDH2 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) (VANGUARD1-like protein 2) (VGD1-like protein 2) (VGDH2) [Arabidopsis Thaliana] (GB:Q5MFV6;GB:Q9M1Q7); similar to VGD1 (VANGUARD1), pectinesterase [Arabidopsis thaliana] (TAIR:AT2G47040.1); similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G47030.1); similar to Pectinesterase (Pectin methylesterase) (PE) (GB:Q42608); similar to Probable pectinesterase precursor (Pectin methylesterase) (PE) (GB:P41510); similar to pollen development related protein [Brassica rapa subsp. chinensis] (GB:ABC25451.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.139579148096336 -1.48794090253766 0.165163004090538 1 0.403201698999991 4.12491839589736 -0.139579148096336 0.0779495807607793
AT1G50120_at 5.90362616701307 6.85274357398464 5.84477013206153 6.3870360826726 6.68519534615489 5.75846065316246 6.62599207812391 6.80707935349785 6.2957465112694 6.65312409833441 6.50307720611016 6.64481589012709 6.27079095118516 6.63874412972812 6.50479243147509 6.39745123501546 6.36853899983876 6.10224556128395 6.73629958100055 0.211433620398909 0.206029086977722 0.213803714857701 0.212508934964146 0.217598910961266 0.212309168543341 0.221667331347903 0.207108481781856 0.231977764116847 0.209032641206082 0.221830994341098 0.209351231192743 0.210668966699336 0.217876082066364 0.212205059006331 0.208929517054121 0.213281360305137 0.210162523021080 0.214602181712017 1 1|0 +|/ 18568611 18569659 18569229.889 18565497 18569840 + gene protein_coding_gene FALSE TRUE AT1G50120.1 similar to Os06g0618600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058085.1); similar to E set domain-containing protein [Dictyostelium discoideum AX4] (GB:XP_642605.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026) -0.255705542957323 -1.48785011875559 0.165186564497335 1 0.403089670979 12.8533781470657 -0.255705542957323 0.249973014522354
AT2G19400_at 2.82878476433408 2.38140483052293 2.69933180814081 2.57302777086392 2.84181212725722 2.33208547745738 2.92559008125267 2.74381726732401 2.78972347342830 2.91256023585854 3.56697077690562 3.25813928991748 3.11777028660835 2.93705889154768 3.65650517142039 3.21962108317192 3.52595719923845 3.05959007172338 2.86643804917430 0.196631384508704 0.199099325450693 0.195404568123420 0.193668694624512 0.194674410635801 0.196189280829789 0.200403758863506 0.195467021952947 0.198930757332187 0.198337720244036 0.206690752479865 0.19513769888943 0.200035523164139 0.200270072718675 0.199266581881935 0.198415424345037 0.201876633408378 0.195707425241843 0.204675440568323 2 0|2 /|- 8406616 8407730 8407318.375 8406239 8409682 - gene protein_coding_gene FALSE TRUE AT2G19400.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G33080.1); similar to protein kinase [Raphanus sativus] (GB:BAC76895.1); similar to protein kinase [Spinacia oleracea] (GB:CAA82991.1); similar to protein kinase [Raphanus sativus] (GB:BAC76896.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.164063035117177 1.48722666226423 0.165348443317696 1 0.402320436822873 5.74020285712932 0.164063035117177 0.123460176996132
AT4G32650_at 3.09932390925599 3.21485533531402 2.23148321012457 1.96706991734546 3.78999406241754 3.22666966809998 1.64137476581402 1.08759345371245 1.78254099559097 2.19866291611802 1.48271622694507 1.45763339273756 1.77823745528735 2.43240071267345 1.56135861756027 1.37977156985155 2.03590722774164 1.76877739253439 1.79015507365795 0.235982552326117 0.243109154572242 0.231218690312414 0.238320473798746 0.236262820977371 0.241605355252724 0.231218690312414 0.240362974192603 0.231792424845928 0.232955969192939 0.233023304231359 0.236921809156715 0.233146689423805 0.231218690312414 0.232554388462011 0.235462548505181 0.241876808451449 0.231218690312414 0.235757921548248 4 4 - 15751695 15752434 15752109.909 15751327 15754859 - gene protein_coding_gene FALSE TRUE AT4G32650.1|AT4G32650.2|AT4G32650.3 ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1); cyclic nucleotide binding / inward rectifier potassium channel member of Stelar K+ outward rectifying channel (SKOR) family Identical to Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel TKC) (KAT3) [Arabidopsis Thaliana] (GB:P92960); similar to KAT2 (K+ ATPase 2), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT4G18290.1); similar to KAT1 (K+ ATPase 1), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G46240.1); similar to Cyclic nucleotide-binding; Cation channel, non-ligand gated [Medicago truncatula] (GB:ABE83629.1); similar to potassium channel [Daucus carota] (GB:CAB62555.1); similar to potassium channel NtKC1 [Nicotiana tabacum] (GB:BAD81035.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Voltage-dependent potassium channel; (InterPro:IPR003091); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820)|Identical to Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel TKC) (KAT3) [Arabidopsis Thaliana] (GB:P92960); similar to AKT1 (ARABIDOPSIS K TRANSPORTER 1), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT2G26650.1); similar to Cyclic nucleotide-binding; Cation channel, non-ligand gated [Medicago truncatula] (GB:ABE83629.1); similar to potassium channel [Daucus carota] (GB:CAB62555.1); similar to potassium channel NtKC1 [Nicotiana tabacum] (GB:BAD81035.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Voltage-dependent potassium channel; (InterPro:IPR003091); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820)|Identical to Potassium channel KAT3 (AKT4) (AtKC1) (Potassium channel TKC) (KAT3) [Arabidopsis Thaliana] (GB:P92960); similar to KAT2 (K+ ATPase 2), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT4G18290.1); similar to Cyclic nucleotide-binding; Cation channel, non-ligand gated [Medicago truncatula] (GB:ABE83629.1); similar to potassium channel [Daucus carota] (GB:CAB62555.1); similar to potassium channel NtKC1 [Nicotiana tabacum] (GB:BAD81035.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Voltage-dependent potassium channel; (InterPro:IPR003091); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) 0.178165672216767 1.48716784447345 0.165363722233470 1 0.402247876691182 4.36273886669653 0.178165672216767 0.145537842021288
AT3G48860_at 7.10878224551076 7.28803912140053 6.82199062489842 7.06731937864151 6.9158227710672 7.34633221314313 6.46945419415459 6.52946018833855 7.01430776428445 6.35048811082975 6.09025442294488 6.25174561471937 6.23186792468167 6.37016081192234 6.0269607031111 6.43451376158037 6.34344131669563 6.58961571908944 6.95566777280618 0.202886123437004 0.204923500101899 0.202537963507300 0.202428682554525 0.206239434539003 0.213997506212907 0.197475682258902 0.203090549551784 0.220777805797533 0.197821713515017 0.200864889240352 0.199377161257365 0.210190793399719 0.202732588563067 0.210580916200736 0.199439104521212 0.213717409935150 0.205273439655955 0.200091140476532 3 3|0 +|/ 18131506 18132814 18132370.5 18128471 18133076 + gene protein_coding_gene FALSE TRUE AT3G48860.1|AT3G48860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23700.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93965.1); similar to Os01g0928100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045273.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) -0.146117769355286 -1.48647710159315 0.165543245151357 1 0.401395882843256 13.4763040506359 -0.146117769355286 0.0917774528389204
AT1G59620_at 4.82050460604747 4.531141418933 5.91566708728479 5.1298007915622 5.55500605045137 4.82906890822134 5.15300802788957 3.81440659077272 4.30735518799813 3.92211648443049 4.00306836800757 4.35508014448973 3.95906483177352 3.80915546848417 3.51427944720965 4.54427768920819 4.65357373263369 4.24411571288900 4.72991975500721 0.274513828662662 0.271844982144270 0.267423292612438 0.266986239647811 0.271047319926746 0.26848044324793 0.271064992245194 0.272773404695995 0.281436061840435 0.265864972488728 0.270002220301527 0.268448291200066 0.267709604252622 0.272503142597616 0.265864972488728 0.270634563413773 0.277470795743631 0.266756734218682 0.270083680835136 1 1 + 21908607 21909164 21908846.909 21906292 21909350 + gene protein_coding_gene FALSE TRUE AT1G59620.1 CW9; ATP binding Encodes CW9. similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58390.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G59218.1); similar to ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G58848.2); similar to Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767) 0.296575165163783 1.48631024276444 0.165586636576901 1 0.401190109130414 9.19613746855308 0.296575165163783 0.300744681016787
AT4G38480_at 1.40912296155428 1.14227423887659 1.29743253332173 1.16728385792121 1.07422423727963 1.49116477168819 1.02385068845675 0.522714387404029 0.353740229788442 1.40926364697075 0.990988692988314 0.855777293261387 1.16940456080016 0.901669023716073 1.38900374620617 0.940595384724483 0.888353959767933 0.56721911630815 0.839188326559946 0.195214503392968 0.192703154763172 0.201334747489171 0.20192162134535 0.197374624615285 0.210414688166035 0.194820749788404 0.196505822550085 0.206899537756255 0.209081224370738 0.202272827353924 0.195784826342924 0.203223604947131 0.197805994071495 0.20301625085192 0.198863155593309 0.205186591888098 0.201762236650966 0.210525733989929 4 4|0 +|/ 18005228 18005778 18005429.9 18003910 18006134 + gene protein_coding_gene FALSE TRUE AT4G38480.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G35140.1); similar to Os10g0544500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065201.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAM34535.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.164257426047492 1.48619501288429 0.165616607662362 1 0.40104801383285 2.05614539622678 0.164257426047492 0.123963673690733
AT4G27860_at 4.57764882065994 4.33286638992212 3.38519992698389 2.95357917662744 2.90385845241012 2.66359987467066 1.20807742820671 0.454140307669196 0.155462310266143 1.41587715843076 1.08799881058288 0.718232264902691 0.955603076486539 0.785656766234016 0.308531856077184 0.469356101521854 1.12348144037109 1.0547466691217 0.733739128461689 0.321776231062629 0.337258145486776 0.319578237097592 0.314859234680821 0.315206995671937 0.307370972738468 0.310617219626477 0.303092971144819 0.308292965470373 0.310843464923123 0.314154084472844 0.303070991290507 0.304749397985087 0.306007049814241 0.320658311159931 0.312362448458397 0.303070991290507 0.303070991290507 0.307707522533385 4 4|0 +|/ 13875527 13876138 13875877.333 13873803 13876532 + gene protein_coding_gene FALSE TRUE AT4G27860.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G27870.1); similar to Os06g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056545.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67955.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) 0.188983730917292 1.48617237935732 0.165622495149622 1 0.401020104203444 3.60052649991798 0.188983730917292 0.161633452175205
AT4G29350_at 12.3770899086605 12.5479093665684 12.8905754350752 12.8994729602472 12.7333873319951 12.6562357834493 12.9354908579066 12.9522391247479 12.7749004824777 12.8731435415871 13.1770884618487 12.89374090694 13.0560312456594 13.0036704608298 12.8253031456650 12.9188550880148 12.9380103367921 13.0293925958022 12.8245390507700 0.0789046877016963 0.074887134156377 0.0794150025071618 0.0767229675360456 0.0759058983051743 0.0809379382017303 0.0762299996402254 0.0757623670473202 0.0876280098986833 0.0759375852623463 0.074655835966011 0.074655835966011 0.074655835966011 0.0831691006432242 0.0771601548100798 0.0765093368359502 0.085735634240951 0.0782067443757743 0.0750111725175903 4 4|0 +|/ 14450158 14451085 14450798.1 14450014 14451400 + gene protein_coding_gene FALSE TRUE AT4G29350.1 PFN2/PRF2/PRO2 (PROFILIN 2); actin binding / protein binding Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. Identical to Profilin-2 (PRO2) [Arabidopsis Thaliana] (GB:Q42418;GB:Q9FS48); similar to PFN1/PRF1 (PROFILIN 1), actin binding [Arabidopsis thaliana] (TAIR:AT2G19760.1); similar to Profilin (Allergen Fra a 4) (GB:P0C0Y3); contains InterPro domain Plant profilin; (InterPro:IPR005455); contains InterPro domain Profilin/allergen; (InterPro:IPR002097) 0.123901367568295 1.48549300941874 0.165799298176562 1 0.400182491685655 25.6512780403174 0.123901367568295 0.0326020101371132
AT2G38600_at 2.17830895226418 2.34171845965491 2.34828217793053 2.25207973807488 1.66351918941534 1.79925827519707 2.08445835511174 2.21469415379694 2.11186957733536 2.12224069382335 1.78782801202817 1.76878382272637 1.68529190752360 2.29475055315569 2.12367141137630 2.16733933729620 2.52608474127409 2.24197203644383 2.18639652031419 0.189758976188406 0.195703590887782 0.190454484397825 0.194011306691828 0.191557099291030 0.191228413240817 0.190251273620869 0.196288244038498 0.193827758409722 0.194945822450748 0.192847301708817 0.191253370059787 0.199952569098775 0.198412303177443 0.197553668517995 0.19417199091281 0.202600529059453 0.198675350308167 0.193631422223631 2 2 + 16153151 16153904 16153414.364 16152985 16153935 + gene protein_coding_gene FALSE TRUE AT2G38600.1 acid phosphatase class B family protein similar to acid phosphatase class B family protein [Arabidopsis thaliana] (TAIR:AT4G29260.1); similar to putative defense associated acid phosphatase [Phaseolus vulgaris] (GB:AAL17638.1); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519); contains InterPro domain Plant acid phosphatase; (InterPro:IPR010028) -0.127356918907712 -1.48536664301987 0.165832202345626 1 0.400026718104034 4.2176069917902 -0.127356918907712 0.0462234284844972
AT3G07600_at 2.97660097611598 2.76401830348001 3.37933604120601 3.35105458670768 2.04290483727461 2.26216136794954 1.60371754312445 1.87279777333289 2.31637389927377 1.66234051097573 1.60931176502101 1.6353200163583 1.69694784741580 1.74832071719887 1.43500738435322 1.49414608412032 1.89027286275948 1.81915126651728 1.56648362195612 0.253291387504144 0.231477686558319 0.244204305436212 0.231792885880228 0.226967609656529 0.230878667806311 0.229637722493883 0.23217132823971 0.227504703422502 0.239233055170333 0.231469324749203 0.230101368897096 0.233172513385473 0.228878503712727 0.232179398991025 0.227515380832277 0.235680200406892 0.234994956101316 0.230840553036238 3 3 - 2424321 2424804 2424496.909 2424123 2425028 - gene protein_coding_gene FALSE TRUE AT3G07600.1 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48290.1); similar to heavy metal-associated domain, putative [Medicago truncatula] (GB:ABE90826.1); similar to Os04g0469100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053042.1); similar to Os04g0469000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053041.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.136120479085313 1.48530486134491 0.165848291532250 1 0.399950562048923 4.28880347216718 0.136120479085313 0.0706073271384006
AT2G16020_at 3.31461014783839 3.35841529233038 3.30008860463011 3.24560473804237 2.76602565847333 3.58109562098657 3.30704483255945 3.38334312018179 3.1826811756344 3.11603126864255 3.70920785708692 3.34784017292338 3.48993945962301 3.4122606558421 3.81518333503395 3.84503771737601 3.78729957637246 3.2692556484933 3.04785236366885 0.209231337429519 0.197457892559028 0.207269678535674 0.201618122362050 0.208990594971708 0.216056218496240 0.209421496208131 0.200782755043632 0.210115545488482 0.20922253045183 0.203909295800821 0.196851403229040 0.200581429469563 0.200394081603567 0.199519727276931 0.212329677869162 0.210677666053692 0.205381388145275 0.201736865630932 2 2 + 6980444 6980643 6980534 6980438 6980668 + gene protein_coding_gene FALSE TRUE AT2G16020.1 unknown protein 0.175665878750442 1.48476537946756 0.165988840390248 1 0.399285647420547 6.63204082962655 0.175665878750442 0.142183954454047
AT1G03600_at 12.1621690940342 12.1613959150768 11.5862154941449 11.6830617043674 11.8793260094279 11.8740642590279 12.3625775099362 12.6187403022367 12.7124722643704 12.4270993420042 13.0317372235584 13.0739924961292 12.7249045809512 12.8571834517361 13.2259233755801 12.7156391551376 12.3227068545002 12.7349509892653 12.4221785463361 0.0565184184640632 0.0578567882961606 0.0629517523012642 0.0618785363650479 0.0563409658661257 0.0625236694659847 0.0584097195791254 0.0600816401143337 0.0580532093840963 0.0589668207514221 0.0585791522067088 0.0566574183712383 0.060121880292492 0.058858547576382 0.0580470435179588 0.0561799739247247 0.0590694914704373 0.0569202269676871 0.057803506324225 1 1 + 898917 899338 899167.091 898875 899654 + gene protein_coding_gene FALSE TRUE AT1G03600.1 photosystem II family protein similar to photosystem II 11 kD protein [Thermosynechococcus elongatus BP-1] (GB:NP_683253.1); similar to Os03g0333400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050024.1) -0.127628728479292 -1.48444894298366 0.166071327781790 1 0.398895708841432 24.7191753610786 -0.127628728479292 0.0474014536079299
AT2G03720_at 1.77107751937874 1.26544998869728 1.66136103373251 2.16715652194931 1.33035423877908 1.64528748160908 1.44794745799817 1.64495665341328 1.63718339208630 1.67636403803282 1.72402859768040 1.41241234310952 1.86070020750070 1.81887581113741 1.67490967373642 1.92114520587624 1.8772189375036 2.10260488967829 1.54640887935404 0.199165546056273 0.201378375860376 0.204871243122983 0.199165546056273 0.199640093657392 0.202125396266996 0.203067954335944 0.202010975101946 0.202650875876284 0.203688762592803 0.212968512913529 0.21109709014407 0.202442890112642 0.199165546056273 0.202833321847553 0.199852056741135 0.202618172752456 0.211296484231048 0.209251392285339 2 2|0 +|/ 1132394 1133169 1132857.4 1132167 1133376 + gene protein_coding_gene FALSE TRUE AT2G03720.1 MRH6 (morphogenesis of root hair 6) Involved in root hair development similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT1G69080.1); similar to Os12g0501400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066822.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN08227.1); contains InterPro domain UspA; (InterPro:IPR006016) 0.1738417179662 1.48434496439479 0.166098440183648 1 0.398767589537538 3.32618505932912 0.1738417179662 0.139465723754530
AT1G70890_at 9.01492547318876 8.99242765482038 7.83457653813602 7.75817968867993 8.59264327520121 8.41201068304066 9.22592778848426 8.90114244397376 7.57099302679071 9.36228558394548 10.1419825310081 9.76742555936586 10.3377311967204 10.4890961771738 9.84208546706478 9.85293448034932 10.0019779035171 10.1410009223857 9.8250183100204 0.147304473091597 0.152430159866418 0.163421116640217 0.157906737084207 0.153040437807426 0.157395339981820 0.150231821780978 0.147646284765653 0.183089828611179 0.149210527761078 0.149480762736068 0.148047809105225 0.149115879101858 0.148181372338539 0.145246417783051 0.14609250512107 0.155375268045456 0.145533176440940 0.147609463035833 1 1 - 26729681 26730080 26729827.182 26729288 26730206 - gene protein_coding_gene FALSE TRUE AT1G70890.1 major latex protein-related / MLP-related Identical to MLP-like protein 43 (MLP43) [Arabidopsis Thaliana] (GB:Q9SSK5); similar to MLP28 (MLP-LIKE PROTEIN 28) [Arabidopsis thaliana] (TAIR:AT1G70830.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.134046839463464 1.48424798435698 0.166123731139267 1 0.398648098769522 18.0870849864991 0.134046839463464 0.0657735870174845
AT1G04430_at 8.31892057927444 8.58981397438987 7.61903075137831 7.6951980281573 8.48071472367426 8.10307696171882 9.14807140124403 9.1408347857548 9.03625852080853 9.01025242318774 10.2159661790363 9.94395994070735 9.5349020222399 9.72050076643018 9.83005621151576 9.10481386150142 8.42320196968643 9.3446624729294 8.86824404154246 0.149088951865166 0.149100174272595 0.154104411660767 0.157005131195631 0.147697416643806 0.160715826499009 0.146939023283024 0.149750313194282 0.155210590111717 0.142878019879695 0.154079355704763 0.148787878456741 0.146484725046550 0.148159913860719 0.158061844546437 0.143225646720232 0.162051700831046 0.146876962084104 0.143509887519364 1 1 + 1200729 1201255 1200947.182 1198118 1201526 + gene protein_coding_gene FALSE TRUE AT1G04430.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT4G14360.2); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47791.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE90857.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.140866068053674 -1.48416302052662 0.166145891163069 1 0.398543417446926 17.6301291122917 -0.140866068053674 0.0815099101595037
AT1G49350_at 5.36158831460964 5.66024641939888 5.47277400273601 5.70711391088979 5.86227841367591 6.04500191176071 4.54154175474736 4.78429985397058 4.35008559153571 4.88769259635894 4.08858558131243 3.81123260888591 3.95415173486389 4.31480209976379 3.95373219910494 3.96847756853152 4.55033285619097 4.44013068374805 4.36975172684629 0.228915958344981 0.216311899921579 0.227167904878473 0.219575370652057 0.219549972380011 0.223907662756037 0.229883384710435 0.222042939685078 0.222546546381109 0.217586196376366 0.214452932984203 0.230154503539420 0.222116240739551 0.220495124633557 0.220764455042643 0.211641421150759 0.21172999966941 0.220531800133535 0.215031418913453 1 1 + 18270033 18270678 18270274.636 18268651 18270938 + gene protein_coding_gene FALSE TRUE AT1G49350.1 pfkB-type carbohydrate kinase family protein similar to Carbohydrate kinase, PfkB [Medicago truncatula] (GB:ABC75360.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.142105167860263 1.48405156788750 0.166174963770133 1 0.398406105841865 9.76486755845553 0.142105167860263 0.0841464360598928
AT2G43520_at 4.11314111348376 4.46784601892787 2.64780502615841 2.71267048597251 3.01015265307559 2.65214420287066 2.72514067740241 2.40667288382216 4.04195404340644 3.25349926633482 3.59938645061125 4.36357175957465 3.12587848260081 3.22741773208905 4.09030432033591 4.17884395078713 3.0736208731249 3.94843983412728 2.70317090311968 0.223765001770530 0.211745486927715 0.217403771607112 0.216670129522157 0.206657485322992 0.212472046504382 0.20793996179713 0.210509265405052 0.209207943819303 0.216196866689107 0.205654043558203 0.209814950278115 0.205654043558203 0.206532820403245 0.209555354555075 0.207008329704824 0.212823298232584 0.207390458704448 0.208813638088284 2 2|0 +|/ 18075704 18076090 18075974.6 18075502 18076245 + gene protein_coding_gene FALSE TRUE AT2G43520.1 ATTI2 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 2); trypsin inhibitor Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Member of the defensin-like (DEFL) family. Identical to Putative trypsin inhibitor At2g43520 precursor [Arabidopsis Thaliana] (GB:O22866); similar to trypsin inhibitor, putative [Arabidopsis thaliana] (TAIR:AT1G47540.1); similar to rapeseed putative trypsin inhibitor 1 [Brassica napus] (GB:CAJ44305.1); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.152224446801849 -1.48378328247702 0.166244964376874 1 0.398075600343047 6.60885046422751 -0.152224446801849 0.103777244961537
AT2G03670_at 3.4669009312782 3.3882662071336 3.06628457474372 3.28324353308669 3.25408654113523 3.32026550516607 3.3296055371456 3.29267680427425 2.50894790732628 3.14634456271843 2.83519134493425 2.7219408411718 2.96362754893008 2.57663673413518 2.38958252181365 3.01324135955285 2.91719928677638 2.49519200080096 2.90263122276813 0.210886506744651 0.201584856732979 0.203649669566053 0.202217852623062 0.215889912582449 0.202056550163652 0.211431981601508 0.207733205976587 0.204551835912597 0.207561714669492 0.206274753658723 0.203837062473370 0.201690184536307 0.204132047452071 0.204788321121516 0.201668480390979 0.206627650968097 0.205912935520104 0.209833889308650 2 2|0 +|/ 1119610 1120247 1119925.875 1117504 1120433 + gene protein_coding_gene FALSE TRUE AT2G03670.1 CDC48B; ATPase CDC48 - like protein AAA-type ATPaseCell. division control protein 48 homolog B Identical to Cell division control protein 48 homolog B (AtCDC48b) (CDC48B) [Arabidopsis Thaliana] (GB:Q9ZPR1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to Os04g0498800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053215.1); similar to H0711G06.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09497.2); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.125978553799099 -1.48306455454062 0.166432618484673 1 0.397190373683590 6.09602504709642 -0.125978553799099 0.042034117914542
AT4G15030_at 3.93884453882932 4.10295072087782 4.57648103054446 4.07611593582097 4.63246222536174 4.11971349088175 4.27866083084192 3.88767514053994 4.46723084610334 4.63072669238155 3.80619417331527 4.30360585095959 4.09339141967823 4.55371610634942 3.93018598436378 4.39616749216910 3.81298765629454 3.8361223019539 5.13387453433887 0.218311325533073 0.224488339424161 0.216446369809243 0.225922162759141 0.223260053410128 0.224757154679261 0.216433309008658 0.221315668913704 0.224982916210235 0.216904700486513 0.217846254589571 0.216490334311554 0.216800797997953 0.222712133790654 0.216433309008658 0.219673078517302 0.218073217123680 0.219551674812957 0.217179037822706 4 4|0 +|/ 8579555 8581146 8579967.5 8578972 8581326 + gene protein_coding_gene FALSE TRUE AT4G15030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56660.1); similar to Phyb1 [Pimpinella brachycarpa] (GB:AAC31614.1); contains domain ACID PHOSPHATASE-RELATED (PTHR11567); contains domain UNCHARACTERIZED (PTHR11567:SF1) -0.176618644129561 -1.48234561921613 0.166620508588706 1 0.396305164018099 8.61935818791728 -0.176618644129561 0.144070179024943
AT3G18215_at 6.03573995484614 6.9105182501972 5.29389881138443 5.76722268664033 6.39354202788247 6.7519279089359 5.10959747912081 6.4346394749616 5.55393735737028 6.1807355804179 7.26121172226952 6.76612704769638 6.70401962968965 7.27942328137101 6.4805898913789 7.02436488308708 6.40559120111763 6.9852522533046 6.90416698773763 0.213635990429629 0.212361101454902 0.218910902377895 0.212361101454902 0.217242555231622 0.219312759057148 0.223501556976686 0.216266826842532 0.251107317879595 0.212361101454902 0.212361101454902 0.215809285629593 0.212447933887025 0.21822836094008 0.218298939919436 0.216731910575033 0.225792454945938 0.220961018950234 0.212361101454902 3 3 + 6241810 6242263 6242049.727 6240856 6242579 + gene protein_coding_gene FALSE TRUE AT3G18215.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24600.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55679.1); similar to Os02g0292800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046597.1); similar to Os08g0153900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061011.1); contains InterPro domain Protein of unknown function DUF599; (InterPro:IPR006747) 0.289699957913379 1.48222904901303 0.166650990764225 1 0.396161659306593 12.6252703895367 0.289699957913379 0.293349313625398
AT4G09500_at 3.64089037970702 3.61514108883486 2.71041204577495 2.81882174128464 2.56575198887500 3.03343480540578 2.8411945809229 2.92415149868299 2.65689331790088 3.00554072955784 3.42484196414449 3.99711658592375 3.54666162432288 3.49501791294666 3.52028535287129 3.16806811301375 3.31380076314225 3.34558191774498 2.49507694771173 0.198091592289071 0.196855011304494 0.193964586834528 0.195321731936552 0.196932736808430 0.200780715385522 0.189235604609422 0.191063643228145 0.215704862149811 0.192149240982707 0.195218058438668 0.191536196435453 0.191240532205315 0.195354022422298 0.204299474876413 0.189235604609422 0.193492252733332 0.196375876709307 0.19863450303537 4 4 + 6018976 6019524 6019175.636 6018132 6019756 + gene protein_coding_gene FALSE TRUE AT4G09500.1|AT4G09500.2 glycosyltransferase family protein similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G53990.1); similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G22930.1); similar to glucosyltransferase [Ipomoea purpurea] (GB:BAD95882.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G53990.1); similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G64920.1); similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G22930.1); similar to glucosyltransferase [Ipomoea purpurea] (GB:BAD95882.1); similar to glucosyltransferase [Ipomoea nil] (GB:BAD95881.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.142006102919214 1.48160027980083 0.166815491411001 1 0.395387731407933 6.11652082167964 0.142006102919214 0.0844295299740337
AT4G23670_at 11.4520904057609 11.6502436348520 11.152775328191 11.1414909565797 11.1433686233436 11.0963047466964 12.6926564351202 12.5494786104423 11.8476576669373 12.4916007587167 12.9890289224033 13.1987368383284 13.0115885239198 12.8920967578912 13.0710178325004 12.9181443378208 12.7472229912383 13.2101641293049 12.5737663766080 0.0725579810108617 0.0733604964419726 0.0755144708765264 0.0748952637239016 0.0721721655993127 0.0747574384998163 0.0767367264830533 0.07723314538979 0.0741033021128489 0.0730837546942366 0.0716846530539021 0.0716846530539021 0.0717011981441779 0.0756484654623968 0.0736755713436455 0.0716846530539021 0.074916552429377 0.0725559877945518 0.0716846530539021 4 4|0 -|/ 12332856 12333624 12333194.1 12332570 12333814 - gene protein_coding_gene FALSE TRUE AT4G23670.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT4G23680.1); similar to major latex protein [Ficus awkeotsang] (GB:AAQ07269.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.126111958459647 -1.48112639123157 0.166939563731842 1 0.394804578051848 24.2643469138382 -0.126111958459647 0.0431274086849744
AT3G03100_at 9.36667014737188 9.35095196572044 9.15481739019009 9.18454042574263 9.12449004666567 9.15648052744223 9.35455835740117 9.42149374200963 9.23595686022956 9.14519631198107 9.184890203511 9.1527947724117 9.02726078886005 9.18788290446 9.14860883727419 9.26252977241778 9.08124658583881 9.1704040496766 9.14348489816119 0.09936817220535 0.0983954316897024 0.0980574613374323 0.097225882801561 0.0989003309781775 0.103596709447058 0.0998561330078926 0.102029800435927 0.103677237821471 0.0986594083593006 0.101258139073737 0.0987451500092475 0.100772425660640 0.103426786212848 0.100094331723919 0.0980828674191525 0.108169202885823 0.103814581618824 0.097962234953322 3 3|0 -|/ 705594 707550 706262.25 705406 707658 - gene protein_coding_gene FALSE TRUE AT3G03100.1|AT3G03100.2 NADH:ubiquinone oxidoreductase family protein|oxidoreductase Identical to Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (EC 1.6.5.3) (EC 1.6.99.3) [Arabidopsis Thaliana] (GB:Q9M9M9); similar to NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48039.2); similar to NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66294.1); similar to Os10g0579300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065506.1); contains InterPro domain NADH:ubiquinone oxidoreductase 17.2 kD subunit; (InterPro:IPR007763) -0.120631786549984 -1.48049210316263 0.167105755338793 1 0.394024227380462 18.4276661233664 -0.120631786549984 0.0140954661255312
AT1G16010_at 8.48714448706566 8.42903764841747 8.64653704296051 8.62693711638055 8.77440940889145 8.62351042939014 8.32913111986112 8.44912245742529 7.53876117695766 7.82489460632942 7.629209689915 7.68085804631574 8.04154426548372 7.68032933621466 7.31686884660014 8.21014517241381 8.1935594991615 7.49070947892466 7.96621391981997 0.16162446419158 0.160281150594063 0.169307537770052 0.15844046168081 0.162546220016156 0.169732116095263 0.157328702011681 0.161061934047368 0.170298390382217 0.160341850443315 0.162738678631116 0.157794576906685 0.160425794447895 0.162182772809992 0.16667113140378 0.161253663964720 0.173126313789829 0.165335136125216 0.162377408853276 1 1 - 5495484 5496138 5495814 5495367 5497714 - gene protein_coding_gene FALSE TRUE AT1G16010.1|AT1G16010.2 magnesium transporter CorA-like family protein (MRS2-1) similar to magnesium transporter CorA-like family protein (MGT1) (MRS2) [Arabidopsis thaliana] (TAIR:AT1G80900.1); similar to magnesium transporter CorA-like family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98804.1); similar to Os06g0650800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058223.1); similar to Os04g0501100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053227.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) 0.124009689361456 1.48043573356724 0.167120531759914 1 0.393954887389527 16.3242418519229 0.124009689361456 0.0350105388386580
AT2G01710_at 5.83666020366719 6.33477255489644 6.15553694068466 6.29061676261614 7.21619473316784 6.55153159431653 6.70082225766852 6.50753157281313 5.54475897791508 5.64798378785167 5.931405013211 5.83322282162513 5.97041235622648 5.57013533915887 5.83933302063298 5.94815936124743 6.072493621357 5.82136531135671 5.97339272423863 0.227741824011455 0.225506520317469 0.230914920974532 0.230316458306579 0.234341593450882 0.240185913507197 0.235793215783365 0.235506650797419 0.235146484619653 0.235117360202566 0.224899717724233 0.231682943410849 0.233983231758303 0.231223091586346 0.224899717724233 0.228574137423034 0.234091666140534 0.224899717724233 0.229383287546491 2 2 + 316176 316647 316387 315725 316992 + gene protein_coding_gene FALSE TRUE AT2G01710.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G64360.4); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE93084.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.179897026350898 1.48007483393329 0.167215162599883 1 0.393510986129497 12.2468888369473 0.179897026350898 0.149419534609548
AT2G45180_at 13.2598095081132 13.5655184543008 13.4311492503117 13.4385500179868 13.745164943708 13.3866399218326 13.2243307478831 13.6251397898698 14.3240687133974 13.9249179113254 14.5056179376004 14.3706196330127 14.4600530678450 14.4253436744280 14.0349553022235 14.1963043299943 13.6468724229622 14.4310610925523 13.8506389577001 0.0668256049832356 0.0624700085494173 0.066338825027571 0.069212148780145 0.0624785509487025 0.0643286048462089 0.0665867025417715 0.062491794741482 0.0618792518921536 0.0628533527110003 0.0637445223278066 0.0644507106964218 0.0625552688445318 0.0638361494694277 0.0637978085783566 0.0618792518921536 0.0697043907431293 0.0633231130772676 0.0634503558865075 2 2 + 18633460 18633785 18633618.455 18633394 18634071 + gene protein_coding_gene FALSE TRUE AT2G45180.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus roseus] (GB:CAA81526.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.153660656760522 1.48001971187906 0.167229620099094 1 0.393443192870693 27.6055688092766 0.153660656760522 0.107056489685698
AT4G10380_at 3.96384700375121 3.70476405471193 4.39269755361826 3.93412099937797 3.26991336677976 3.15219431580452 4.77775779630281 4.94495621993453 2.99119619140429 2.96475739024456 3.15147788815345 2.87264242533340 3.57303478031532 3.20984813634566 2.72182716604463 3.24227594028547 4.06834290804769 2.96226981469909 2.62945198715931 0.225845635551253 0.223459258620507 0.243847284386706 0.238901955603370 0.231046860311341 0.240232687553994 0.229947404793591 0.236551539780419 0.234084643148802 0.228092799766379 0.232369560728080 0.226015511155891 0.228870549394652 0.239927500243433 0.223459258620507 0.226893794933235 0.230128183330103 0.224471658339945 0.232226378728619 4 4|0 -|/ 6431553 6432432 6432085.1 6431232 6434818 - gene protein_coding_gene FALSE TRUE AT4G10380.1 NIP5;1/NLM6/NLM8 (NOD26-like intrinsic protein 5;1); boron transporter/ water channel Essential for efficient Boron uptake and plant development under boron limitation Identical to Probable aquaporin NIP5.1 (NOD26-like intrinsic protein 5.1) (Nodulin- 26-like major intrinsic protein 6) (AtNLM6) (Protein NLM6) (NodLikeMip6) (NIP5.1) [Arabidopsis Thaliana] (GB:Q9SV84); similar to NIP6,1 (NOD26-like intrinsic protein 6,1), water channel [Arabidopsis thaliana] (TAIR:AT1G80760.1); similar to nodulin-like intrinsic protein NIP1-1 [Atriplex nummularia] (GB:AAQ11826.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.148593341823146 -1.47998605112811 0.167238449221106 1 0.393401795130802 7.06103978312136 -0.148593341823146 0.0977765770256853
AT2G20760_at 8.89874452481836 8.93946046741499 8.98042659067446 8.9398335245121 8.57883331088532 8.57807090458295 8.6877397750602 8.80074344142447 8.99393194773075 8.83316275550086 9.39826082358356 9.21852488715415 9.00512025862525 9.31928633922613 9.35569482014318 8.74769020418314 8.69930757361576 9.15597385379693 8.59417414046637 0.100718672520652 0.101261664903523 0.0998766619705222 0.106314797660136 0.110329472632445 0.106128938082006 0.107057131211259 0.101804990684621 0.111605079143836 0.100973922629570 0.099006055246225 0.100024733713879 0.100063136540477 0.102537180215697 0.0996876515001084 0.099603382792577 0.107624696546160 0.100278174973969 0.102108123533005 2 0|2 /|- 8950368 8950794 8950575.4 8949844 8952325 - gene protein_coding_gene FALSE TRUE AT2G20760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83515.1); contains InterPro domain Clathrin light chain; (InterPro:IPR000996) 0.121505880479609 1.47968140627454 0.167318374909385 1 0.393027154308462 17.7602675472251 0.121505880479609 0.0219417992633725
AT3G15690_at 8.27956202410093 8.28264980754052 7.94537650799 7.80083301560822 8.57736534838955 8.44361347441096 8.94886236558687 8.58157750946704 8.41686574751198 8.29440975729615 8.68381730563315 8.40671582816082 8.31038964491615 8.57181198450567 8.58257124107262 8.5227378357368 7.99863179332482 8.39531681241191 8.41367253185037 0.133837493372364 0.126261424845157 0.140993870978395 0.130009514075275 0.123765406981498 0.127237766151977 0.127939658700337 0.124642792703803 0.132193354338853 0.131330483935852 0.123765406981498 0.126506700483147 0.128069614921423 0.123765406981498 0.131319896060374 0.123765406981498 0.142052262300744 0.133539024346878 0.132694181070057 3 3|0 +|/ 5318175 5319383 5318749.8 5316923 5319620 + gene protein_coding_gene FALSE TRUE AT3G15690.1|AT3G15690.2 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related similar to biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52670.1); similar to Biotin/lipoyl attachment [Medicago truncatula] (GB:ABD28385.1); contains InterPro domain Single hybrid motif; (InterPro:IPR011053)|similar to biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52670.1); similar to Biotin/lipoyl attachment [Medicago truncatula] (GB:ABD28385.1); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.136174731620039 -1.47891390561603 0.167519879261504 1 0.39208352834362 16.7619708739400 -0.136174731620039 0.0721225082005428
AT2G22680_at 1.68847365502152 1.33286536118615 1.70436737690209 1.98676851223373 1.48928103141507 1.55154293985596 2.03802970657203 2.44344148588450 1.28324993857326 2.17212556544893 1.22296824437203 1.05371834284721 1.79109542155375 1.49112763629506 1.21975995145237 1.52522685636665 1.83177601395273 2.03461561923019 1.44762739052348 0.188444866201646 0.195968735563897 0.194868081326303 0.191636011677223 0.19401453858161 0.190395546369473 0.188376108458690 0.196394022588369 0.197819827181868 0.196770209517156 0.192962898319803 0.201298257520059 0.199949030458005 0.19544798513167 0.190418232408645 0.195752117647125 0.194995533506012 0.188376108458690 0.195124113323444 2 2 + 9653980 9654351 9654209.727 9652393 9654693 + gene protein_coding_gene FALSE TRUE AT2G22680.1 zinc finger (C3HC4-type RING finger) family protein similar to EDA40 (embryo sac development arrest 40), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37890.2); similar to H0102C09.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67645.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.152880437243737 -1.47875392119436 0.167561908756489 1 0.391886870100976 3.3571564131042 -0.152880437243737 0.105895161564015
AT2G03520_at 0.335972341969643 0.18127890521622 0.649360274493576 0.521567125816266 0.276754831706520 0.473702599038675 0.390653016779208 0.824983259548936 0.46225445752454 0.669666049419666 0.204350435795910 0.291231955357621 -0.0769325013130271 0.101284312515678 0.190553168767970 0.813157850206516 0.0827005748184174 0.302040614002462 0.590457561708429 0.206975352538687 0.202460054800781 0.206267026234034 0.203808223481715 0.203843488876644 0.202460054800781 0.204099898219309 0.202460054800781 0.203552711481727 0.207443658751897 0.209522431600775 0.206181720589852 0.207581128852675 0.203138187908253 0.203913940581504 0.202460054800781 0.211884787961781 0.207992333698796 0.203990816086477 2 2 + 1070677 1071215 1070908 1069530 1071266 + gene protein_coding_gene FALSE TRUE AT2G03520.1 ATUPS4 (Arabidopsis thaliana ureide permease 4) Identical to Ureide permease 4 (AtUPS4) (UPS4) [Arabidopsis Thaliana] (GB:Q9ZQ88;GB:Q6E273;GB:Q6E274;GB:Q6E275); similar to ATUPS1 (Arabidopsis thaliana ureide permease 1), allantoin transporter [Arabidopsis thaliana] (TAIR:AT2G03590.1); similar to Ureide permease 4 (AtUPS4) (GB:Q9ZQ88); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834) -0.144226697365005 -1.47871140231411 0.16757308040891 1 0.391834606738617 0.863121206397708 -0.144226697365005 0.0895367389569203
AT1G54410_at 13.5919964495208 13.4738593130267 13.4228418928163 13.4053140228896 13.660792924139 13.5536578535619 13.2024370977508 13.1307538184797 13.3370219398598 13.6802820518995 13.6636044600569 13.6731339513504 13.5384445335848 13.5587598990595 13.3226095052184 13.4230679332372 13.6790006622850 13.4850097138509 13.356975768637 0.0877654730255198 0.085850924326593 0.0851170880375083 0.0870941060895633 0.0869627219467938 0.0901913466271627 0.0840662863189812 0.0865225625866332 0.0875617160951514 0.0855636972678677 0.0850606314888865 0.0867532983407557 0.0851179247069038 0.0862667343134407 0.0842566000434908 0.0844646524417825 0.0840662863189812 0.0848221736480502 0.0863496597746462 1 1 - 20313976 20314242 20314125.545 20313444 20314434 - gene protein_coding_gene FALSE TRUE AT1G54410.1 dehydrin family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to water stress induced protein [Brassica oleracea] (GB:AAS77419.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.122875291261095 1.47859583945990 0.167603447277258 1 0.391692564009568 26.930730214421 0.122875291261095 0.0304103998476259
AT2G25460_at 1.89212258029625 1.69633498618086 2.19791024371742 2.11922721637926 1.65344296925429 2.06933455549397 1.62113310072814 1.61677547251379 1.97851835470351 1.94783914787656 1.94843656008503 1.56421398411608 2.09474103433792 1.60328616210265 1.92319912375401 1.47761223865534 2.1945572380295 2.0399404004114 1.71160561106984 0.213605396586174 0.207045866627676 0.211186582011536 0.217175800876669 0.207636582970935 0.208476145645006 0.201479811253288 0.207818022179294 0.219330272451548 0.203695527808837 0.202861470095887 0.204744730426733 0.200997217977401 0.202625443046692 0.206109415402481 0.200997217977401 0.212770327016264 0.200997217977401 0.20165784160181 2 2 - 10840845 10841200 10841028.727 10839832 10842561 - gene protein_coding_gene FALSE TRUE AT2G25460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04860.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72197.1); similar to Os01g0194000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042284.1); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.139907258042331 1.47798459311618 0.167764145173757 1 0.390941375307217 3.72581983085539 0.139907258042331 0.0807089181187266
AT1G65890_at 2.41225588862341 2.53906839891374 2.53941346618375 1.69482513452720 1.77498872755626 1.95123645170715 2.17757320946717 2.07912314497584 2.10498781312445 2.18368023861925 2.49027323041351 2.01918781207699 1.84519126842488 2.05282220888820 2.16878574926386 2.01574841187459 2.18220803780066 2.11218195730571 2.19565300533294 0.183837794571557 0.177389673554787 0.183562196543064 0.182943901247929 0.177389673554787 0.183920608853572 0.178601051843388 0.183918215980817 0.182186209145948 0.187648694625684 0.182972478997909 0.181583843556760 0.191554794710294 0.182975555755259 0.181984067417107 0.179156036330292 0.182481490959943 0.180596804350255 0.180477484815363 1 1 - 24516273 24516834 24516595.182 24516120 24518322 - gene protein_coding_gene FALSE TRUE AT1G65890.1 acyl-activating enzyme 12 (AAE12) similar to acyl-activating enzyme 11 (AAE11) [Arabidopsis thaliana] (TAIR:AT1G66120.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G65880.1); similar to Os09g0555800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063895.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); similar to Os03g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048852.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.181264866677139 -1.47780868910201 0.167810415162981 1 0.390725235443385 4.28218064617678 -0.181264866677139 0.151871272153642
AT3G02180_at 9.97042934424194 10.0873505280396 9.55212836921478 9.72353011583385 9.9341423187634 9.87990957527601 9.90627120993226 10.1717393967678 10.6538627434817 10.4643149477496 10.7005326266310 10.7150947010277 10.4284084039530 10.482919438892 10.7945742149462 10.4699064926627 10.0484920458636 10.7283089290810 10.5207166692126 0.073368233272984 0.069924788329431 0.0751681463164902 0.0699643061701712 0.070963623532139 0.0782336774533278 0.06887119486895 0.0709281275830407 0.0785492314288632 0.072013814017371 0.0736698767928841 0.0712233159706907 0.0691498833541024 0.0724296965128974 0.0726720595039561 0.0702591587636981 0.0771245123130985 0.0694248461088537 0.0689369273914422 3 3|0 +|/ 405028 405433 405248.111 404740 405661 + gene protein_coding_gene FALSE TRUE AT3G02180.1|AT3G02180.2 SP1L3 (SPIRAL 1-LIKE3) SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. similar to SP1L4 (SPIRAL1-LIKE4) [Arabidopsis thaliana] (TAIR:AT5G15600.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96926.1) -0.130894269244594 -1.4775221474409 0.167885810827603 1 0.390373186043117 20.4493514706488 -0.130894269244594 0.0590579740881744
AT1G43860_at 8.30414616552517 8.22514086391461 8.17946542877902 8.14716201407644 8.1130422848054 8.11524187688853 8.26048511445909 8.18489933892314 7.22951905509742 7.06699848497853 7.32863191057087 7.53357770525139 7.01765776614625 7.23206696421829 7.56238445033984 7.0786504422183 7.23948015895578 6.96572636933348 6.39693310915528 0.176181101465487 0.175870637355081 0.184376361701740 0.183629645220289 0.174831333624712 0.182848935695853 0.172509114799401 0.171298317556415 0.192492626030562 0.190302955318751 0.172074267420289 0.18308519668839 0.174256240917721 0.179061705335665 0.184034941832539 0.177383409904495 0.191375349107664 0.183033213089937 0.188511700401807 1 1|0 -|/ 16624743 16625335 16624972.556 16624508 16626909 - gene protein_coding_gene FALSE TRUE AT1G43860.1 transcription factor similar to Shwachman-Bodian-Diamond syndrome [Gallus gallus] (GB:NP_001006211.1); similar to Os08g0107500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060798.1); contains InterPro domain Polysaccharide lyase family 8-like, C-terminal; (InterPro:IPR011071); contains InterPro domain Shwachman-Bodian-Diamond syndrome proteins; (InterPro:IPR002140) 0.121007559117025 1.47732307047392 0.167938209624075 1 0.390128622690904 15.2624923128996 0.121007559117025 0.019733844490516
AT1G65630_at 0.959318179475513 1.25626852077262 1.08674937888632 1.18764748616097 0.795904101184937 1.09888931906771 0.708081233427108 1.0949695423181 1.72297859347689 1.55732807660095 1.20168384249758 1.45968675810351 0.963897416166677 0.908626883974208 1.06310052317543 1.14726378819796 1.53150767782779 1.28886931673092 1.31919491137103 0.175568156837021 0.177180541978906 0.175075566198494 0.175645263327954 0.177046337112023 0.176586851763814 0.176748774776050 0.176746633523534 0.185787143079531 0.173535161790741 0.178094728303183 0.181409226707195 0.182542164779324 0.178607431220265 0.173543063830095 0.178410511033421 0.183106966701525 0.180595389512368 0.180320317471065 1 0|1 /|- 24410220 24410846 24410484.2 24410205 24412731 - gene protein_coding_gene FALSE TRUE AT1G65630.1 DEGP3 (DEGP PROTEASE 3); serine-type peptidase/ trypsin Encodes a putative DegP protease. Identical to Putative protease Do-like 3, mitochondrial precursor (EC 3.4.21.-) (DEGP3) [Arabidopsis Thaliana] (GB:Q9SHZ1;GB:O04480); similar to DEGP4 (DEGP PROTEASE 4), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT1G65640.1); similar to DEGP10 (DEGP PROTEASE 10), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT5G36950.1); similar to Os06g0234100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057235.1); similar to Os05g0417100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055560.1); similar to hypothetical protein DDBDRAFT_0204001 [Dictyostelium discoideum AX4] (GB:XP_640805.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.149974732827690 -1.47720985846450 0.167968014266014 1 0.389989552640292 2.38785182998693 -0.149974732827690 0.100883973155103
AT1G79420_at 1.77048900556268 1.36848149729923 1.29762960367436 1.60664810459616 1.69206487006038 1.78825033287080 1.57613669663827 1.56318096855167 1.82825532427326 1.47601547859255 1.96507160141823 1.84632355248263 1.92024638437744 1.54418424169300 1.75232530272074 1.60481375130622 2.1789903585133 2.06031750847552 1.48877808420670 0.186102883368806 0.183919066958253 0.181894401388833 0.191204323265813 0.189474678167833 0.183536742692192 0.189626109171957 0.187932935017160 0.186188096063009 0.188840836585373 0.192299351581413 0.181894401388833 0.194728125811267 0.18908244730809 0.182750330698410 0.183284279429826 0.203228154706341 0.181987093850281 0.182541260726478 1 0|1 /|+ 29878533 29878984 29878756.7 29876351 29879208 + gene protein_coding_gene FALSE TRUE AT1G79420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19540.1); similar to Protein of unknown function DUF620 [Medicago truncatula] (GB:ABD33276.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) 0.143963655526671 1.4770150969916 0.168019298551524 1 0.389750322820727 3.31121865989714 0.143963655526671 0.0893407946596756
AT3G27060_at 5.94450926101165 6.77442520244042 6.00950928024594 5.81066835685177 6.93402565442923 6.59265142637029 7.35009466742879 7.75520502293299 7.30014630496576 7.88859179670218 7.52045483063111 8.10133588843143 7.91245891567154 7.44666752475938 8.23469937086985 7.96479711247343 7.3968610835446 6.93724902323325 7.19925380239741 0.190422707711792 0.187513201116745 0.19452608800457 0.197030671987987 0.207713407615605 0.201420431363105 0.196994181817517 0.198561618181898 0.200576423151345 0.192156091272068 0.198418908204762 0.192113027889751 0.193164822249731 0.205954439968504 0.19818731072264 0.187513201116745 0.194237287581605 0.187901107670133 0.188443086105959 3 3|0 -|/ 9981225 9981861 9981551.4 9981103 9982532 - gene protein_coding_gene FALSE TRUE AT3G27060.1 TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. Identical to Ribonucleoside-diphosphate reductase small chain C (EC 1.17.4.1) (Ribonucleotide reductase small subunit C) (Ribonucleoside-diphosphate reductase TSO2 subunit) (TSO2) [Arabidopsis Thaliana] (GB:Q9LSD0); similar to RNR2/RNR2A (RIBONUCLEOTIDE REDUCTASE 2A), ribonucleoside-diphosphate reductase [Arabidopsis thaliana] (TAIR:AT3G23580.1); similar to Ribonucleoside-diphosphate reductase small chain (Ribonucleotide reductase small subunit) (Ribonucleoside-diphosphate reductase R2 subunit) (GB:P49730); contains InterPro domain Ribonucleotide reductase; (InterPro:IPR000358); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) -0.196346679149556 -1.47692809918525 0.168042211013423 1 0.38964346798917 14.2223758273257 -0.196346679149556 0.173827267616196
AT4G20390_at 2.72682154729786 2.29117799824881 2.37162861414008 2.21474125521402 2.37704684178316 2.74344711471615 2.59185848506182 2.60553237488106 3.14641750255861 2.63862634795469 2.80853086139742 2.74530300772543 2.80022169013584 2.64994399083864 2.82943583635612 2.6318113475235 2.47856691384775 2.91754135284199 2.93541249618041 0.210469470748843 0.214741912227861 0.218495503118041 0.216064437012277 0.216830491505173 0.213614148089353 0.218630736753348 0.211085800527624 0.218175086149628 0.214879739302654 0.212583373731269 0.210094353316511 0.214195350320165 0.210094353316511 0.215057231931966 0.213050881287914 0.216233994806742 0.210094353316511 0.212596233435595 4 4|0 +|/ 11007207 11007831 11007607 11007046 11008077 + gene protein_coding_gene FALSE TRUE AT4G20390.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G44550.1); similar to plant integral membrane protein TIGR01569 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99368.1); similar to Os12g0610800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067249.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.150640526028468 -1.47669309516066 0.168104117004865 1 0.389354844957463 5.31002585757516 -0.150640526028468 0.102209999123545
AT3G02890_at 3.70097838142895 3.25065669300329 3.61389806685241 3.65407823966311 4.0972565683768 3.77307387414661 4.30121098767936 3.98611370340523 3.83403027199231 3.56973177249495 4.04043609161929 4.52233642286604 4.01914481626418 4.15657244531859 4.13502379107777 4.44478519178865 3.24105788441333 3.56904588857317 3.63689280187214 0.197798569314194 0.202583090622872 0.200622976543120 0.202216439365102 0.209353175865691 0.197798569314194 0.203057488599541 0.201830232919939 0.209413099601201 0.201251860737231 0.198922973704516 0.197798569314194 0.197798569314194 0.203583594778621 0.199022598694888 0.197798569314194 0.211891144774642 0.205379730273241 0.199595174552199 3 3|0 +|/ 644164 645133 644628.5 641050 645310 + gene protein_coding_gene FALSE TRUE AT3G02890.1 PHD finger protein-related similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G16680.1); similar to PHD-finger, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96031.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.155334390125426 1.47660153482992 0.168128241597455 1 0.389242401957004 7.64529261362444 0.155334390125426 0.110644714018053
AT3G20880_at 2.328105810059 2.51158477419408 2.4672728458888 2.40397841878375 1.92484547897422 2.23406768152898 1.91873177905487 2.15418797557276 2.40277480019999 2.46416825907434 2.33384154030900 2.01148668523617 1.83557111313257 2.00933219005013 1.90298852073201 2.16282303340553 2.82106747952576 1.94286785176693 2.42739976990742 0.211290526906123 0.218484992492996 0.214429990034265 0.208766910709116 0.211052096144497 0.214064173754286 0.207778541567986 0.212068660125656 0.220884521196109 0.217607987939467 0.210370936304722 0.208194754185867 0.217806198555078 0.220349697407531 0.207935531271246 0.208152014895127 0.210419066863219 0.220750565277586 0.207789909080427 3 3 - 7313778 7315066 7314251.545 7313544 7315889 - gene protein_coding_gene FALSE TRUE AT3G20880.1 zinc finger (C2H2 type) protein (WIP4) similar to zinc finger (C2H2 type) protein (WIP5) [Arabidopsis thaliana] (TAIR:AT1G51220.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93767.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.137280893191864 -1.47657980050576 0.168133968658591 1 0.389215711218418 4.52231930125556 -0.137280893191864 0.0751799943756935
AT3G12780_at 12.3405697602200 12.4438465715848 12.0335722480565 12.2160493320210 12.0861803606307 11.9996886086003 12.6940340156593 12.9163267498341 13.0997266164471 13.2552289897477 13.4553568979460 13.5518922741127 13.0897433361547 13.2787984405266 13.5855645700473 13.5245693670185 12.9813946641172 13.4454012029522 12.9689031562523 0.0819123338350116 0.0821186939567599 0.0844002139996074 0.082763924375541 0.0822224880181221 0.0855368194072388 0.082161777162977 0.0822283283874144 0.0899689880259988 0.080924245298391 0.08338893072161 0.0813519366340288 0.080924245298391 0.0900839654425003 0.0857815082988173 0.080924245298391 0.0843524262594937 0.0871674900046504 0.080924245298391 3 3|0 -|/ 4061165 4061962 4061576.6 4060978 4063313 - gene protein_coding_gene FALSE TRUE AT3G12780.1 PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576) -0.129342231851867 -1.47624954799800 0.16822101178124 1 0.388810176939192 25.5773049632884 -0.129342231851867 0.054959193927322
AT3G54860_at 6.42876575705792 7.0880603142542 5.98228679721816 6.30594060263864 7.56334421972912 6.98164158799637 6.5095881317939 6.62024234578876 5.89859756927591 6.39461607938242 6.6969804931551 6.98688440919126 6.65368616075813 6.6452765199681 6.44322553198935 6.33068779854662 5.90331466318795 6.34294043594938 6.21491474203588 0.258881309373445 0.241697607468835 0.248570996433933 0.256404025493966 0.246947665273981 0.259545133936812 0.246963573758634 0.247283662299079 0.277540447521779 0.242864567759618 0.262057375242551 0.241697607468835 0.241697607468835 0.251886330710183 0.248580639301407 0.248898512862028 0.287855745464136 0.256691821478644 0.243878210278075 3 0|3 /|- 20335454 20336277 20335859.625 20335068 20340895 - gene protein_coding_gene FALSE TRUE AT3G54860.1 ATVPS33 (Arabidopsis thaliana vacuolar protein sorting 33); protein transporter Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis. Identical to Vacuolar protein sorting-associated protein 33 homolog (AtVPS33) (VPS33) [Arabidopsis Thaliana] (GB:Q94KJ7;GB:Q9SV35); similar to VPS45 (VACUOLAR PROTEIN SORTING 45), protein transporter [Arabidopsis thaliana] (TAIR:AT1G77140.1); similar to OSJNBb0045P24.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE02908.1); similar to Os04g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052270.1); similar to hypothetical protein DDBDRAFT_0189239 [Dictyostelium discoideum AX4] (GB:XP_635401.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.188818768016859 1.47601658401832 0.168282436243046 1 0.388524143112379 13.0198590354720 0.188818768016859 0.163263424394932
AT3G57510_at 2.24147017343843 2.32374340410817 2.18648997202385 2.38602936192854 1.90250152700949 2.08701623030997 2.04923141654449 2.3350825317261 2.39800071225968 2.10290555793817 2.38854402243579 2.39204549121609 2.10769103860625 1.84069975407449 2.10121813513064 2.35425407129703 1.99321050056133 2.31655945669473 2.57822581083987 0.171928822212384 0.170381843497392 0.173883730203256 0.177530251915408 0.182062816400525 0.171408175389172 0.172470123863182 0.171146962520744 0.168982322093295 0.178752042901737 0.178137346210423 0.172130360199306 0.179491972069958 0.174267979675786 0.184866499678354 0.169410385822152 0.181830060524381 0.168982322093295 0.182923833162373 3 3|0 -|/ 21294529 21295505 21294814.6 21294315 21296918 - gene protein_coding_gene FALSE TRUE AT3G57510.1 ADPG1 (endo-polygalacturonase 1); polygalacturonase Arabidopsis thaliana ADPG1 gene similar to endo-polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT2G41850.1); similar to endo polygalacturonase [Brassica rapa subsp. rapa] (GB:CAD21651.2); similar to Polygalacturonase [Brassica napus] (GB:CAA90272.1); similar to polygalacturonase [Brassica napus] (GB:CAA65072.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.134902746781766 -1.47601556762532 0.16828270427247 1 0.388522895245289 4.46218982835177 -0.134902746781766 0.0697265112503473
AT1G03170_at 1.65470180135551 1.56744482519202 1.70586165475148 1.65955694061702 1.11889149544062 1.55814319809862 1.18428833276833 1.58785829128250 2.26077623074331 2.47502849342814 1.95890367474123 1.67819383195878 1.59461753093104 2.12694676695786 1.96336698546197 1.54320822312178 2.07337698459453 1.62793143282662 1.67397147380395 0.210218594211362 0.216365790979661 0.213730167312114 0.218773704812921 0.220464353615989 0.215525619293777 0.213066872905761 0.224812973096296 0.221522527288938 0.229667363064359 0.213630708861948 0.21546837342982 0.20896265145438 0.223833019617279 0.217944111933529 0.209525400162182 0.224226808372808 0.214185405509338 0.220335489249097 1 1 + 769929 770500 770167.818 769632 770684 + gene protein_coding_gene FALSE TRUE AT1G03170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02810.1); similar to hypothetical protein 12 [Plantago major] (GB:CAJ34820.1) -0.151866938795115 -1.47571061773267 0.168363138058052 1 0.388148520588473 3.48329843984627 -0.151866938795115 0.104632787638888
AT1G26400_at 1.21280615625631 1.04958926523070 1.32309278875435 1.64556646314474 0.76836168367363 1.43147828071679 0.808386657047882 1.03989175851585 1.16170990038644 0.805662934934792 0.982058102596365 0.997601170910318 1.40197256808188 0.964861371106711 1.07987375609321 0.961902896735707 1.17632548832731 1.50835081088082 1.20212974152541 0.186747952990936 0.195487105377727 0.192866108448417 0.189855443097535 0.186112734640827 0.191933194677683 0.186620916256591 0.191153385638192 0.191254843832989 0.191285034944021 0.189354119199022 0.187824172649489 0.189388630208097 0.190401726790118 0.191851330220121 0.186985379168797 0.199467346544718 0.186276884086012 0.193928073659929 1 1 - 9133286 9133804 9133568.273 9133278 9134861 - gene protein_coding_gene FALSE TRUE AT1G26400.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26410.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26420.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26390.1); similar to FAD linked oxidase, N-terminal; TonB box, N-terminal [Medicago truncatula] (GB:ABD32596.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.171036878226176 1.47559636939213 0.168393280757393 1 0.388008275224972 2.25520619643774 0.171036878226176 0.136696453762077
AT4G15900_at 7.4041492949029 7.45361760528231 7.19313035759207 7.38131185494896 7.46573361421063 7.58350311120154 7.46413185852125 7.06055911665158 6.58760131860464 6.64943836637929 6.0492233928963 6.14895706796377 5.99162030325006 6.16575967569203 6.2727745347692 6.4111756673693 6.83431810297089 6.66344743128877 6.7317048298022 0.220941828992157 0.220418731649182 0.231071592210439 0.236324242377965 0.224998839674869 0.233251273084921 0.224455498284857 0.227149076388997 0.242406180118748 0.228769117631191 0.226989667279674 0.223910278326800 0.220418731649182 0.228978086834879 0.230575136657970 0.220418731649182 0.220418731649182 0.231344648433386 0.231747495441941 4 4|0 +|/ 9026026 9027412 9026529.286 9023743 9027681 + gene protein_coding_gene FALSE TRUE AT4G15900.1 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); nucleotide binding Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Identical to PP1/PP2A phosphatases pleiotropic regulator PRL1 (PRL1) [Arabidopsis Thaliana] (GB:Q42384); similar to PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) [Arabidopsis thaliana] (TAIR:AT3G16650.1); similar to PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95840.1); similar to Os03g0339100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050058.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.139391691960770 -1.47517628024693 0.168504154696001 1 0.387492655049697 13.8624709484741 -0.139391691960770 0.080167468333405
AT2G31150_at 4.15316670241598 4.4236590367436 5.10316672500648 4.06224944483572 6.19636797468889 4.75089329537038 5.51385653898733 4.50113745953762 3.57112632797841 4.43332938647001 4.74532828396565 4.67634308080615 5.06611090535719 4.03355364091924 4.4076304905302 4.90671935956554 5.19946050525944 4.45800268323123 5.14747311623709 0.243167423213901 0.238648449487512 0.231790915498209 0.238861896134857 0.251414110293396 0.233053970901845 0.251945127738768 0.240273810059437 0.259783732364765 0.235974073864262 0.271494366386314 0.23525597457029 0.240665439107841 0.261331377380559 0.249546388375861 0.231828179360610 0.249732943475671 0.240468405363331 0.243129801285626 2 2 + 13280245 13280416 13280326 13279452 13281655 + gene protein_coding_gene FALSE TRUE AT2G31150.1 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism similar to ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G06190.1); similar to SAP-like protein BP-73, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94331.1); similar to Os03g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049178.1); similar to Putative plasma membrane proton ATPase [Oryza sativa] (GB:AAK92634.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) 0.341440883681697 1.47489003072421 0.168579740227086 1 0.387141364174115 9.373372094998 0.341440883681697 0.357669782307290
AT3G57920_at 1.27280954413336 1.69538636392894 1.64617789218844 1.25307219188561 1.26201216004236 1.82550618952877 1.34313730000525 1.02266226242665 1.23328118496370 1.63539053931874 1.77805260925560 1.73672131682898 1.35816357761235 1.90015699766300 1.75609088821722 1.64927094238227 1.26791917530994 1.767751387913 1.49842987440321 0.266451545236047 0.266421467062358 0.269782915694990 0.279512722956122 0.265045051091992 0.272253207045725 0.265312771643007 0.266156126126708 0.260973825894698 0.260973825894698 0.263160009266334 0.261810353776016 0.269139219383415 0.27096606380096 0.263885958119005 0.268748771439942 0.263652265735929 0.263723909942548 0.265017159668085 3 3 - 21455435 21455971 21455760.636 21455298 21457012 - gene protein_coding_gene FALSE TRUE AT3G57920.1 squamosa promoter-binding protein, putative Identical to Squamosa promoter-binding-like protein 15 (SPL15) [Arabidopsis Thaliana] (GB:Q9M2Q6); similar to squamosa promoter-binding protein-like 9 (SPL9) [Arabidopsis thaliana] (TAIR:AT2G42200.1); similar to squamosa promoter binding protein-homologue 5 [Antirrhinum majus] (GB:CAB56570.1); contains InterPro domain SBP; (InterPro:IPR004333) 0.179629284895162 1.47357799685873 0.168926560699648 1 0.385531768136861 2.96882868541393 0.179629284895162 0.150202379612085
AT2G38920_at 0.173488690938579 0.322568739978 0.0169687232869528 0.0189337365215554 0.59358665192113 0.220107540763725 0.149119633265811 0.242030670418168 0.413292484509261 0.128508038279713 0.578489177475945 0.395713518409192 0.45630027018476 0.562111877944696 0.309760727844322 0.709913707361728 0.488069333706501 0.424265653067335 0.0894771710653089 0.217224977209087 0.214514211992064 0.216909491774354 0.220484543604024 0.225484101557828 0.214514211992064 0.216500583308329 0.214514211992064 0.225139432278548 0.222854078966668 0.215997753935795 0.217112183649925 0.219969953133979 0.221177869747463 0.218583848851927 0.219197304189222 0.225738976806306 0.222533991056255 0.221398787611146 2 2 - 16255915 16256798 16256507.4 16255224 16258080 - gene protein_coding_gene FALSE TRUE AT2G38920.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related similar to SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related [Arabidopsis thaliana] (TAIR:AT1G02860.1); similar to Zinc finger, RING-type; SPX, N-terminal [Medicago truncatula] (GB:ABE85047.1); similar to Os03g0650900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050788.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.135374682385542 1.47342581638415 0.168966827313472 1 0.385345133167396 0.567602513987109 0.135374682385542 0.0714252238710979
AT1G09500_at 2.11127531941109 2.37641826238429 2.90444528995668 2.95231661153099 2.33563958305739 2.74887514832419 2.58748730873206 2.76479276622916 0.759977535383111 1.30176853118115 0.550523014238051 0.203775485537747 0.9419329832716 0.762374054432257 0.629145129099683 0.922933147542942 2.54882651292173 1.10677864164871 0.773609788381151 0.266053475496857 0.259543932380204 0.268522012440591 0.260736248019253 0.258184920196195 0.254323691188843 0.270023152818151 0.264846209560428 0.280254445604101 0.255599357179788 0.260016426320288 0.262432385742296 0.254323691188843 0.257868750789519 0.256829819353477 0.257075991544235 0.256438363847285 0.254323691188843 0.254323691188843 1 1 + 3067724 3068448 3068060 3066701 3068600 + gene protein_coding_gene FALSE TRUE AT1G09500.1|AT1G09500.2|AT1G09500.3 cinnamyl-alcohol dehydrogenase family / CAD family|cinnamyl-alcohol dehydrogenase similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09510.1); similar to aldehyde reductase [Vigna radiata] (GB:AAD53967.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)|similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09510.1); similar to Cinnamyl alcohol dehydrogenase [Prunus mume] (GB:BAE48658.1); similar to aldehyde reductase [Vigna radiata] (GB:AAD53967.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)|similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09510.1); similar to putative cinnamyl alcohol dehydrogenase [Malus x domestica] (GB:AAC06319.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.144246623399806 1.47287631236169 0.169112293284643 1 0.38467132094053 3.54935865590410 0.144246623399806 0.090716519376641
AT1G17690_at 5.45410676421450 5.99486192654549 5.58198234814259 5.41193707077197 5.7412193448312 5.97429180404286 5.8095344280756 5.6841966508917 5.13867780203115 5.29117783509249 4.70472789176944 5.3861742903968 4.74992055373302 4.49673796677255 5.18080002141082 5.17452196233317 5.31934617432164 4.92665762034439 5.29364013914501 0.230421689124694 0.233177483881715 0.233966159755775 0.233719876010204 0.245929092296656 0.227557572867742 0.239440066992011 0.226524429134784 0.233976565362919 0.230137158432145 0.233914491337847 0.233848172901246 0.229056024135527 0.236504811886724 0.229383986697291 0.230956905336965 0.226630697350515 0.230677313192245 0.233794825846819 1 1|0 -|/ 6082910 6084258 6083526.4 6082748 6088333 - gene protein_coding_gene FALSE TRUE AT1G17690.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to Os05g0295100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055109.1); similar to MGC79554 protein [Xenopus tropicalis] (GB:NP_001008035.1); contains InterPro domain Protein of unknown function DUF1253; (InterPro:IPR010678) -0.153560874552829 -1.47255855341285 0.169196460091488 1 0.38428175220412 10.8232793266352 -0.153560874552829 0.108261408693512
AT1G44780_at 2.80894177333266 3.17418311643813 2.81659839159019 2.55048735768148 3.10287742050484 2.48782938881235 2.66886246198856 3.22950597240067 3.42213902190642 3.42330407599662 3.47633714758272 3.56328323888846 3.03517107675487 3.32019478832136 3.21107208542268 3.19133238410178 2.63744779257043 2.95391421556735 3.11527746479369 0.201436153563584 0.208552194994439 0.201256853939479 0.202148355653068 0.202338988251164 0.210522471145984 0.203771879833796 0.204580755126234 0.205317562222500 0.202657075730771 0.202552215533101 0.206063636898169 0.201350300606903 0.210446735588084 0.203429902728968 0.200269006992386 0.209918740470103 0.207084833786324 0.205203862985967 1 1|0 +|/ 16913658 16914502 16913878.5 16912148 16914710 + gene protein_coding_gene FALSE TRUE AT1G44780.1|AT1G44780.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08310.1); similar to hypothetical protein PY00532 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_725134.1); similar to Os11g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068054.1); similar to Mature parasite-infected erythrocyte surface antigen (MESA) or PfEMP2 [Plasmodium falciparum 3D7] (GB:NP_703354.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08310.1); similar to hypothetical protein DDBDRAFT_0192009 [Dictyostelium discoideum AX4] (GB:XP_629009.1); similar to Os11g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068054.1) -0.188785643903578 -1.47240445702793 0.169237289480778 1 0.384092851192636 6.101827874702 -0.188785643903578 0.163883913147361
AT1G65540_at 7.10791883116032 7.37123820992103 7.3438281608464 7.08338818553795 7.30061406186846 6.51878108747355 6.96220553563501 6.19876697149285 5.21352144678135 5.57409878139701 5.43366691951228 5.67199415018198 5.64488584140061 5.69739916715436 5.31779944369952 6.05605315396775 5.91198405037051 5.27957516321099 5.26047111732835 0.217934149838382 0.218474210613756 0.23044900078514 0.217946908712371 0.218403603906448 0.219862705794747 0.220527498088498 0.219979449006413 0.233751604836438 0.22240612223323 0.216211580804958 0.218584166378542 0.217453847112657 0.217153138654591 0.222924520654569 0.217030959357794 0.228714213277633 0.219241284690721 0.216169236522080 1 1 - 24366230 24368809 24367519.941 24366045 24369674 - gene protein_coding_gene FALSE TRUE AT1G65540.1 calcium-binding EF hand family protein similar to calcium-binding mitochondrial protein-related [Arabidopsis thaliana] (TAIR:AT3G59820.1); similar to Os02g0608400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047387.1); similar to H0306B06.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67493.1); similar to Ca2+ binding protein cbp1 [Triticum aestivum] (GB:AAW66005.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain LETM1-like; (InterPro:IPR011685); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.214463220615486 1.47216951401453 0.169299556234107 1 0.383804867637499 12.4738593895034 0.214463220615486 0.199671436794996
AT3G12130_at 6.01618266122126 6.7138396411314 6.13653149095933 6.38020085262075 6.47766702415613 6.73079039139982 5.76817183086185 6.49615141274327 5.96033387381274 5.85850390833519 5.96681116440738 5.9890018030983 5.83799098813009 6.24042363586144 5.83354090963092 5.87752055652937 6.07720969263371 6.33658296496925 5.56767551211784 0.198631992537421 0.196550647233289 0.19854071148265 0.198671951507926 0.209080537760605 0.205401067060546 0.205731938243241 0.208950955749805 0.200202418253840 0.200809484971238 0.193863189187356 0.199810776101066 0.193067104732874 0.204715846117706 0.194502869868922 0.193067104732874 0.198730759505579 0.201659439666351 0.198064952226729 3 3 - 3864501 3865067 3864842.182 3864158 3866602 - gene protein_coding_gene FALSE TRUE AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein similar to KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana] (TAIR:AT5G06770.1); similar to Os02g0194200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046176.1); similar to KH domain-containing protein / zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD35424.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.203545918140100 1.47211771401509 0.169313287383984 1 0.383741377265893 12.2476367360515 0.203545918140100 0.184782007660060
AT3G57760_at 1.92999177502545 1.99797050260392 2.14727322436835 2.21641480957572 2.00835913752412 1.98159197321412 2.11762332049490 1.97595572244443 2.53893072324026 2.35732354499009 2.79888572603131 2.64737686161969 2.13806604125648 2.57892924854207 2.45661478549094 2.47123148106046 2.66299979109181 2.70426878611441 2.29109611735920 0.178054807965872 0.171312364213870 0.168298743874568 0.1782057378669 0.173851037581947 0.183025260491412 0.176600105060306 0.173441067619956 0.173108616616779 0.174763784654453 0.172601135073349 0.173485113369512 0.17361275794497 0.172941642442861 0.175322592926394 0.175019647101945 0.185674597341111 0.168298743874568 0.176834997234422 3 3 + 21407517 21407992 21407754.545 21406570 21408221 + gene protein_coding_gene FALSE TRUE AT3G57760.1|AT3G57760.2|AT3G57760.3 protein kinase family protein|ATP binding / protein kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G57740.1); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.122268792158057 1.47211004192837 0.169315321182691 1 0.383731973842114 4.52343758416341 0.122268792158057 0.0300676468114047
AT1G19010_at 3.90304338046983 4.48279855911554 4.36939532801355 4.29846447976979 4.07367902025068 3.98408449980513 3.8016369571017 4.68130789083645 3.87862547064714 4.13396675178137 3.96828565020253 4.13054440294761 3.83113237326199 3.47755328630821 3.48763367483992 3.92675191293105 3.38142601463156 3.42805175075287 4.20698013861773 0.248682445788014 0.250056366725087 0.256635721377323 0.251669188578878 0.253307095093115 0.252188021262156 0.247090192144662 0.249698940331951 0.255043618108663 0.251672431144737 0.248418369165100 0.249868170638699 0.245482168651561 0.251950982613183 0.249703170278408 0.245482168651561 0.256781977582527 0.253300595644329 0.256540413508556 1 1|0 +|/ 6566579 6567318 6566911.4 6565485 6567516 + gene protein_coding_gene FALSE TRUE AT1G19010.1|AT1G19010.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74860.1); similar to hypothetical protein LES1_20t00016 [Lycopersicon esculentum] (GB:AAX95765.2) -0.202529634351021 -1.47204614485860 0.169332260513034 1 0.383653658527434 8.08785784954527 -0.202529634351021 0.183388582310082
AT3G07860_at 2.24830302197995 3.27713433767078 1.9602602142985 2.25081650058324 2.38335547890079 2.37588279432074 2.69632737683264 2.10146030854269 1.56474170662273 2.06416498816732 1.80871466741947 1.96749714392523 1.55202228236475 1.35225578342991 1.95706051321458 1.35574860394174 1.78704343433506 1.97105611922399 1.85343037322911 0.243898100577056 0.251139684106685 0.239392238277129 0.237619828869722 0.244724668431482 0.237619828869722 0.251175048863506 0.237619828869722 0.247774970719117 0.23937935919457 0.237619828869722 0.237619828869722 0.248877053360495 0.251589804918015 0.241246631770294 0.249391152025695 0.253879444415006 0.24458663892324 0.253038300154564 3 3|0 +|/ 2508019 2509370 2508630.333 2507886 2509515 + gene protein_coding_gene FALSE TRUE AT3G07860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25340.1); similar to At3g07860 [Medicago truncatula] (GB:ABE78159.1); contains domain no description (G3D.3.10.20.90); contains domain Ubiquitin-like (SSF54236) -0.223374192544288 -1.47144752541680 0.169491027039411 1 0.3829200674026 4.18487775805194 -0.223374192544288 0.211724407325145
AT1G78550_at 7.31434043646146 7.35962637812667 7.55158122673795 7.5971285877403 7.24566741088706 6.82818865102297 6.24799866939429 5.71903058485282 6.82240555189211 6.15781869623411 6.72259798082762 6.6729324306722 5.78728883215871 6.20763643130662 5.82800862200599 5.92411573662906 5.94020739061795 6.36980854426713 6.5494244061815 0.233368363192801 0.239064612143317 0.239754770786734 0.245068979338339 0.238459566288791 0.252782433159947 0.257644078436346 0.23623067796078 0.241926680667407 0.234717536820292 0.233368363192801 0.235460428776731 0.233631259568779 0.249356161837686 0.241302994047992 0.237921278716683 0.242378170478812 0.244701511502643 0.246489813810495 1 0|1 /|- 29549930 29550434 29550199.4 29549820 29551380 - gene protein_coding_gene FALSE TRUE AT1G78550.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to SRG1 (SENESCENCE-RELATED GENE 1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G17020.1); similar to putative ethylene-forming enzyme [Oryza sativa] (GB:AAL79798.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.158542031589840 1.47134687575480 0.169517733966866 1 0.382796742842343 13.3286739335679 0.158542031589840 0.117144219475343
AT4G17430_at 4.27643160011177 4.38202998327897 4.10509369158046 4.53798196266406 4.31058610599065 4.02892032047043 5.15990654065637 4.85550142543746 4.26791844182322 4.26095636351661 4.43871521956801 4.6752016056482 4.37566079024581 4.28624047391061 4.6012799072719 4.44237818276575 4.4030388725872 4.54539258700018 4.52634478323505 0.195899543121297 0.196000780476481 0.203115464119012 0.197974403265870 0.19885043417463 0.207911587977137 0.198637131254197 0.205626441830201 0.201410371631186 0.200073475876691 0.196257047483452 0.194766151030786 0.194766151030786 0.194766151030786 0.194766151030786 0.19777498498698 0.206663286639871 0.199236628833185 0.198561512000389 4 4 - 9725264 9725742 9725463 9724852 9726840 - gene protein_coding_gene FALSE TRUE AT4G17430.1 similar to hypothetical protein 31.t00055 [Brassica oleracea] (GB:ABD65093.1) -0.151786637589164 -1.47113296281811 0.169574506749898 1 0.382534656369991 8.86842061264027 -0.151786637589164 0.105342023195385
AT4G03990_at 1.82674080719049 2.16908984527501 2.09201336478052 2.27635699943807 2.18473452521629 1.94063907912487 2.03888437280349 1.96605014092280 2.51622711209692 2.57000520718833 2.27570982284318 2.07975979417805 2.07987902052196 2.04446766289949 2.06292614816416 1.95811971691157 2.00570252455988 2.05496931952666 2.32839714835726 0.150220001364028 0.158828602571214 0.154098661541288 0.158835165232842 0.152477109214938 0.156518280990010 0.157027589846133 0.154666194692505 0.156442065767617 0.150220001364028 0.154055068478611 0.152837976834232 0.157590452020779 0.154014407081139 0.151523241252002 0.150922277969817 0.158428582474234 0.161124894662297 0.153529559750097 4 4|0 -|/ 1917339 1917343 1917341 1916459 1917814 - gene protein_coding_gene FALSE TRUE AT4G03990.1 similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G14140.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains domain HIPIP (high potential iron protein) (SSF57652) -0.139053352044115 -1.47026122314622 0.169806035965028 1 0.381466851708022 4.33268109538467 -0.139053352044115 0.0804421018821268
AT2G03770_at 1.16556309189901 1.26592605095699 1.16441913421641 0.927923664771743 1.16336918902333 1.4510329708364 1.34812199376602 1.21283806249861 1.45610392813942 1.50432791219871 1.23753636873930 1.35868594261408 1.25490556952392 1.16653365480103 1.20285742958328 1.17698930152859 1.49574811488676 1.58096671168904 1.56182508373203 0.187922082298029 0.192341009612630 0.183731589023693 0.184044212216882 0.18479082061571 0.184874796538712 0.186340444249169 0.191057547541604 0.19640374271199 0.182750423304366 0.184291253844105 0.187075612305521 0.184401666110680 0.185641894444348 0.188000253059175 0.190043082837111 0.185701872104364 0.182719018755125 0.19369970942192 2 2 - 1150932 1151436 1151276.818 1150868 1151842 - gene protein_coding_gene FALSE TRUE AT2G03770.1 sulfotransferase family protein similar to ST (steroid sulfotransferase), sulfotransferase [Arabidopsis thaliana] (TAIR:AT2G03760.1); similar to steroid sulfotransferase 4 [Brassica napus] (GB:AAR14296.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) -0.134783574043746 -1.47015225166365 0.169834997199858 1 0.381333399683265 2.62074770042647 -0.134783574043746 0.0707315342605007
AT1G11880_at 1.82809582026240 1.96111616488795 1.89614337228267 2.07405730899295 1.89732126663982 1.46174473983623 1.67029823776217 1.92852586130399 2.41129097821051 2.54328525581382 1.96196588857525 2.31618518687279 1.93347242797735 2.1828006356974 1.88206478322022 1.89895959253311 1.48491849932969 2.5151172905457 1.94624885115612 0.200437579341059 0.194134697073147 0.194368465142269 0.208801912422868 0.193090860235996 0.196599499816873 0.194768907077697 0.196284137626194 0.212909342336311 0.20306983832536 0.193892280588264 0.193090860235996 0.216331542572046 0.198032881948395 0.193090860235996 0.196255656966342 0.203219966881351 0.208322298784582 0.195765335821355 1 1 - 4007909 4008586 4008252.909 4007704 4010432 - gene protein_coding_gene FALSE TRUE AT1G11880.1 similar to Protein of unknown function DUF409 [Medicago truncatula] (GB:ABC75356.1); contains InterPro domain Mannosyltransferase, PIG-V; (InterPro:IPR007315) -0.146515919707875 -1.47015129310007 0.169835251975034 1 0.381332225805603 4.00076812973973 -0.146515919707875 0.0956909667352824
AT1G04090_at 1.45418379928130 1.55096790755929 1.6822100148091 1.36568548244004 1.60467816465128 1.85206399159599 1.74320571390046 1.48996600532067 1.70910471133212 1.82314492899490 1.94417561852267 1.53625849158051 1.65892926672464 1.98831001542992 1.98688191301056 1.86758426603557 2.17036218338592 2.15218171831427 1.56297946203223 0.204915782125683 0.202834523863382 0.210265954364526 0.208379568973178 0.2056498248842 0.203906424341832 0.205373625480901 0.21125783920218 0.221740484979653 0.217394397002255 0.211792637723984 0.204396435417565 0.207524047659492 0.202834523863382 0.212131610945286 0.202834523863382 0.213058756456342 0.204946118665341 0.208123186184169 1 1 + 1058673 1059139 1058871.273 1057150 1059418 + gene protein_coding_gene FALSE TRUE AT1G04090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18490.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43950.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04350.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE91890.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE90426.1); contains InterPro domain Protein of unknown function DUF946, plant; (InterPro:IPR009291) 0.140627145098884 1.46998122200197 0.169880460094083 1 0.381123960822556 3.39861770240073 0.140627145098884 0.0838708389225707
AT1G79610_at 5.9287531194471 6.08275118092439 6.56987709323423 6.32871573650526 6.21125169966124 5.68380897515225 5.90843006113232 5.63621560503031 5.30075900429959 5.42164317611935 4.57130110412009 5.22263511802125 5.4176075052773 5.33063060872193 4.82634225438543 5.35455513944026 5.87418590338809 5.55176921617867 5.07214548206731 0.246901239469679 0.237544553843577 0.246227683579921 0.257261553425899 0.232314468928555 0.252195371053655 0.233565957556566 0.239091754476658 0.246143807499748 0.233084745355246 0.232314468928555 0.233978928653377 0.241134259297847 0.232314468928555 0.247782409855598 0.236177431582069 0.252831204095868 0.232453492752614 0.232314468928555 1 1|0 -|/ 29958172 29959016 29958716.5 29957766 29962082 - gene protein_coding_gene FALSE TRUE AT1G79610.1 sodium proton exchanger, putative (NHX6) Identical to Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (NHX6) [Arabidopsis Thaliana] (GB:Q8RWU6;GB:Q8S395;GB:Q9MA14); similar to ATNHX5/NHX5 (NA+/H+ ANTIPORTER 5), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G54370.1); similar to Na+/H+ antiporter [Populus tomentosa] (GB:AAX37333.1); similar to Na+/H+ antiporter, isoform 2 [Solanum lycopersicum] (GB:CAC83608.1); similar to Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (GB:Q8RWU6); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.156577509933799 1.46997264654846 0.169882739884734 1 0.381113459936621 11.3104642223961 0.156577509933799 0.114028545376082
AT3G28450_at 8.093204142599 8.36200456942924 7.7750222192441 8.15889763011147 8.28471743989233 7.6291479653178 7.85531787106734 7.80765190422189 8.04178423909819 7.061848053883 7.20527768120199 6.98197683023028 6.97843180548454 7.20903424266896 6.95814668210018 7.23893630428722 6.9210763828481 7.2646790054413 7.01125122615268 0.200749990426986 0.206652963925617 0.209265328569748 0.21371736507297 0.209235805128170 0.214118112406635 0.204550485821611 0.201736813986816 0.205612082484801 0.202831462464193 0.198542088842875 0.195321172076050 0.195321172076050 0.208577310184915 0.214556096160408 0.195321172076050 0.220577005360731 0.200238291169650 0.200490028278817 3 3 + 10669829 10670371 10670090.909 10668499 10670614 + gene protein_coding_gene FALSE TRUE AT3G28450.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G27190.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78632.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.172265640558203 -1.46960631545849 0.169980153725487 1 0.380664913761998 15.2289068209825 -0.172265640558203 0.139698893836240
AT4G34265_at 7.12485918635287 7.79757668471006 6.97343171785245 7.33861435076703 7.71905280780085 7.76878984634694 7.24197151313146 7.68137814106805 7.43802028189691 6.71007308345034 7.37121984729599 7.55515418649305 7.67972243293816 7.4940094186268 7.2751759376534 7.65778820590445 7.06530575882362 6.82287314218383 6.82732818587968 0.173881122500105 0.156258136285622 0.156407378989600 0.158018365610489 0.158509149862820 0.164604697936885 0.162826766242014 0.163681856698815 0.18759275992287 0.170484062614720 0.164502624267505 0.159554988912509 0.159920505610349 0.168859310465920 0.166720500653768 0.155751928950547 0.166224448173296 0.165750502772113 0.158034535677386 4 0|4 /|+ 16402628 16402703 16402662.125 16402284 16403827 + gene protein_coding_gene FALSE TRUE AT4G34265.1|AT4G34265.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15000.3)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15000.5) 0.180937365936904 1.46908137593245 0.170119827635428 1 0.380022287738512 14.6341909309948 0.180937365936904 0.152980630710296
AT1G63880_at 9.18068976154313 9.43826022120617 9.20603169010536 9.00477414936676 9.58579067122505 8.5500560372985 9.02940062507614 8.66114924054362 9.21320158918292 9.2726751928398 8.99904761017527 8.8377881414852 8.56271136619993 9.24909382665864 8.57041317285408 9.19819796745832 8.25447905890194 8.5535425828382 9.1550106025646 0.177296812385293 0.174708454167295 0.185278305806828 0.179983585029712 0.175037511037790 0.207233747532057 0.174214077023609 0.181103548116189 0.221993220954065 0.17742555715772 0.180954957045853 0.176046544298989 0.183156248041179 0.175275524541409 0.175933585138105 0.173651991739346 0.196542302244287 0.186624699994101 0.17199935931095 1 1 - 23716207 23716750 23716471.818 23715939 23719787 - gene protein_coding_gene FALSE TRUE AT1G63880.1 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G63750.3); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G58120.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44392.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593) -0.213090868733835 -1.46888253464043 0.170172760205070 1 0.379778906508845 18.0779132215542 -0.213090868733835 0.198463027987131
AT2G38570_at 2.02178983458728 1.90128351965434 2.21687467122438 2.23877154077997 2.68701242151915 2.6537892104239 2.65988812581109 2.23499685335108 2.68624303227911 2.63109514596998 2.7990049409035 2.79262311217165 2.67264490812951 2.63623929424922 2.98040318000829 2.71171383668671 2.23315990850228 2.38242085091728 2.54613166654228 0.209650784813736 0.206589572787301 0.21246337776601 0.209879461343221 0.209360476862741 0.218748967249558 0.210512184818219 0.206534996484901 0.212665456066254 0.215244293562390 0.215009965242068 0.206563920168529 0.213232519501666 0.212333004278008 0.218050909617289 0.206534996484901 0.218433448423981 0.222537270733917 0.206534996484901 2 2|0 -|/ 16144033 16145159 16144794.2 16143932 16145495 - gene protein_coding_gene FALSE TRUE AT2G38570.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95796.1) 0.137246008325749 1.46882530509986 0.170187997612733 1 0.379708861610313 4.96289220660716 0.137246008325749 0.0767390842881767
AT3G54940_at 1.77482826862912 2.11015543058849 2.00657191595675 2.04927165509669 1.44618838483590 1.67576633521833 2.18919205082170 1.98366697034024 1.79797274499875 1.97889721671876 1.67407917999078 1.58960875408572 1.88855919165621 1.8899791172415 1.59962342746063 1.82645400631146 2.18874831618262 1.83669503277047 1.82806551373075 0.198741814404146 0.199319806103358 0.201277928297268 0.196272533643653 0.194797215470929 0.193168311157607 0.198572602749068 0.19618316518077 0.199103005224477 0.197492443527462 0.196031597003599 0.199695786483858 0.208554267367195 0.203668108377452 0.198902031854505 0.192892240562158 0.198994939915689 0.194845515638221 0.192267888812877 3 3 + 20366317 20367067 20366724.455 20365329 20367295 + gene protein_coding_gene FALSE TRUE AT3G54940.1|AT3G54940.2|AT3G54940.3 cysteine proteinase, putative similar to cysteine proteinase A494, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT2G21430.1); similar to cysteine proteinase [Glycine max] (GB:CAA83673.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668)|similar to cysteine proteinase A494, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT2G21430.1); similar to cysteine proteinase [Glycine max] (GB:CAA83673.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -0.138302277127482 -1.46853127686863 0.170266301251923 1 0.379349019482936 3.74447022811683 -0.138302277127482 0.0791550911006934
AT3G19760_at 10.2579573823673 10.3087061208505 10.5227806876815 10.4392765102160 10.6832796549369 10.4074684353779 10.6570568696170 10.5933383822823 10.0857119590002 10.1728477258641 10.4421765580753 10.3840449531683 10.3314842366080 10.1793798836520 10.2419793712284 10.1818992711539 10.2899459613231 10.2336161578229 10.0091697314077 0.0845241796882312 0.0805916412385944 0.0789688676471746 0.081892957459108 0.082765758582463 0.0783128245842382 0.0792924259347327 0.082298576386757 0.0843324879949779 0.0806359148249754 0.0784300348083159 0.0802472907273931 0.0794259000364576 0.0845165856284686 0.0808670636938085 0.0803487617078884 0.0818282124437798 0.0815877115878961 0.0838635851382742 3 3|0 +|/ 6865257 6866199 6865712.444 6863719 6866599 + gene protein_coding_gene FALSE TRUE AT3G19760.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G51380.1); similar to Eukaryotic initiation factor 4A-3 (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) (GB:P41380); similar to translation initiation factor [Pisum sativum] (GB:CAA76677.1); similar to putative RH2 protein [Zea mays] (GB:ABC55720.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.127629646822717 1.46852194219589 0.17026878770444 1 0.379337596137053 20.6711374743593 0.127629646822717 0.0518240952698955
AT3G63210_at 7.50876795588187 7.56193329600985 7.00726136635453 7.19390705719568 8.39181361536136 8.32174268588415 6.91081353953124 7.43215269668365 5.37815868457186 6.34361778276024 5.02590990435361 5.2160365072924 7.13001436005971 6.4943519864081 4.06737510919067 6.40330495344709 7.23931833986726 5.81284260280391 6.29299789626603 0.214152923447166 0.214304559780978 0.222676765493939 0.209004820547099 0.224436289163880 0.220828085833858 0.213545436273798 0.213159805355766 0.216598184143992 0.208479980908109 0.210900368553987 0.206984966248436 0.206651079805135 0.207576342381212 0.213750402404006 0.208791076518901 0.215161771440323 0.206651079805135 0.213158677088251 3 3 - 23365204 23365660 23365409.091 23364590 23366135 - gene protein_coding_gene FALSE TRUE AT3G63210.1 MARD1 (MEDIATOR OF ABA-REGULATED DORMANCY 1) encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102 similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT3G22550.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE87128.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.146991870867038 1.46793782833677 0.170424438388799 1 0.378622876870905 13.5053335307597 0.146991870867038 0.0970291464646487
AT2G45100_at 4.94310550088067 5.15125287374239 5.00953373188056 4.7209482138103 5.29638069026014 4.91241274255911 5.37267238196938 5.50424046656188 5.60428382829924 5.62687094021673 5.33938420342994 6.02188465332794 5.60278113270755 5.75905167796339 5.68154892048057 5.69754415052685 5.30745659402631 5.49835776275900 5.70600889970156 0.217121449832078 0.216173399824987 0.234345107829385 0.222563497279401 0.217331148307122 0.232213513549705 0.216081363816713 0.223268577526366 0.220551656333761 0.216071486802055 0.223704127995881 0.211356900103512 0.214189483035124 0.21697135308936 0.211530483956822 0.211356900103512 0.228565314523079 0.217421524305361 0.220759440955006 2 2 - 18602488 18603245 18602805.889 18602423 18605513 - gene protein_coding_gene FALSE TRUE AT2G45100.1 RNA polymerase II transcription factor similar to RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G09360.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE92419.1); similar to Os05g0305100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055147.1); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Brf1-like TBP-binding; (InterPro:IPR011665); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.145109523498769 -1.46780695506043 0.170459329292698 1 0.378462765875524 10.7434295050290 -0.145109523498769 0.093409206583955
AT3G54900_at 10.4721456425733 10.5807758321858 10.3703761317232 10.4458328542518 10.6725726946600 10.273477098826 11.3906379913092 11.3703488472880 10.8753920952630 10.8346560602895 11.0946679857120 11.1680888248402 10.8236246582202 11.0584235971159 11.3534415328638 11.0048433612898 10.7120421895538 10.9896125720589 10.6407209964580 0.0848935780564741 0.0826427301988119 0.0870834134957892 0.0851457475845445 0.0823203516936371 0.0948241520284284 0.0836122318474694 0.0846793401148963 0.0877284699934784 0.0828901115390146 0.0829676695605984 0.0834917204792916 0.0837840904796653 0.0855537854873171 0.0832674985667583 0.0829102834680393 0.0887365768596788 0.0841926669439856 0.0823203516936371 3 3 - 20352918 20353324 20353163.273 20352566 20353371 - gene protein_coding_gene FALSE TRUE AT3G54900.1 CXIP1 (CAX INTERACTING PROTEIN 1) A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses. Identical to Monothiol glutaredoxin-S14, chloroplast precursor (AtGrxS14) (CAX- interacting protein 1) (CXIP1) (AtGRXcp) (GRXS14) [Arabidopsis Thaliana] (GB:Q84Y95;GB:Q9SV38); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G04950.1); similar to Os03g0851200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051913.1); similar to Glutaredoxin-related protein [Crocosphaera watsonii WH 8501] (GB:ZP_00518290.1); similar to COG0278: Glutaredoxin-related protein [Nostoc punctiforme PCC 73102] (GB:ZP_00107743.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.135454505301911 -1.46776695325209 0.170469995020854 1 0.378413829297244 21.601612290374 -0.135454505301911 0.0728441286645724
AT3G48010_at 1.07149934433375 0.980550271214236 1.42584453347831 1.15437864883705 0.794530807565863 1.09903355537658 0.846408546058748 0.93364486743708 1.21959827492045 0.393069442147573 1.09111713882510 0.556615554275083 0.707699065967133 0.822665103637688 1.2474679213802 0.880805742218591 1.22323062295966 0.973877980835782 0.867086371691265 0.215832984609748 0.215832984609748 0.224382315316798 0.219532588677332 0.215832984609748 0.223898485706552 0.216308563149686 0.219386776032977 0.229273554995825 0.218054210505150 0.220391280954294 0.220902995793674 0.219006457107715 0.215832984609748 0.216422558849318 0.223083600702706 0.216872183993693 0.221175944085491 0.215832984609748 3 3|0 -|/ 17732360 17732975 17732784.2 17732320 17735013 - gene protein_coding_gene FALSE TRUE AT3G48010.1 ATCNGC16 (cyclic nucleotide gated channel 16); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 16 (Cyclic nucleotide- and calmodulin-regulated ion channel 16) (CNGC16) [Arabidopsis Thaliana] (GB:Q9SU64); similar to ATCNGC14 (cyclic nucleotide gated channel 14), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G24610.1); similar to ATCNGC17 (cyclic nucleotide gated channel 17), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30360.1); similar to ATCNGC18 (cyclic nucleotide-gated ion channel 18), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT5G14870.1); similar to putative cyclic nucleotide and calmodulin-regulated ion channel [Oryza sativa (japonica cultivar-group)] (GB:BAD36523.1); similar to Cyclic nucleotide-binding; Ion transport protein [Medicago truncatula] (GB:ABE89042.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938) 0.135885662031402 1.46759569802706 0.17051566345129 1 0.378204332318259 1.92049611554545 0.135885662031402 0.0738879700895513
AT3G21180_at 0.859146310140174 0.696980111197175 1.11508361044179 0.94023227124966 1.06026552899214 0.940371243393413 1.03685902677749 1.04613376851086 0.93351858764948 0.528250278438501 0.842839745133538 0.605545583982959 0.771804595527008 1.24104082309437 0.85435952897547 1.05892883881866 1.11056750663444 1.03843155473707 0.91725857676457 0.20968048636604 0.207722434059838 0.208761016203658 0.203160324896513 0.203160324896513 0.205967461598835 0.204287396798170 0.204275727703309 0.206694157722767 0.203367865230706 0.206663526102241 0.203160324896513 0.212215433916428 0.210251109929636 0.203160324896513 0.203947314061998 0.206311084269518 0.205596000407002 0.210561287834744 3 3|0 +|/ 7430915 7431884 7431438.889 7425525 7432206 + gene protein_coding_gene FALSE TRUE AT3G21180.1 ACA9 (autoinhibited Ca2+ -ATPase 9); calcium-transporting ATPase/ calmodulin binding one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. Identical to Putative calcium-transporting ATPase 9, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9) (ACA9) [Arabidopsis Thaliana] (GB:Q9LU41); similar to ACA10 (autoinhibited Ca2+ -ATPase 10), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G29900.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) [Arabidopsis thaliana] (TAIR:AT3G63380.1); similar to ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G57110.2); similar to putative plasma membrane calcium-transporting ATPase [Physcomitrella patens] (GB:CAD21958.1); similar to putative calcium-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD27978.1); similar to putative calcium-transporting ATPase 8, plasma membrane-type [Oryza sativa (japonica cultivar-group)] (GB:BAD09972.1); contains InterPro domain ATPase, P-type cation exchange, alpha subunit; (InterPro:IPR006069); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014) 0.125819491929125 1.46744934483629 0.170554699576973 1 0.378025310487412 1.82860844370307 0.125819491929125 0.0462193751557634
AT3G16930_at 2.12048885871291 2.02048451866944 2.31471159762284 2.30413405324451 2.18827875406864 2.03248326154172 2.04931257694820 2.17459331150784 2.37839150469578 2.42725318692039 2.40925983070028 2.01969103548128 2.26602599773359 2.45705995080156 2.57223616925725 2.22468082322071 2.63104742262345 2.49469130571435 1.96082489663638 0.199709118312054 0.19474472133097 0.199654764004785 0.196260012532239 0.197349230730373 0.198138333038985 0.200726461504062 0.197815604437999 0.202742164090419 0.200986447365003 0.193964036519628 0.201083021034054 0.196554889317538 0.196530319464758 0.19673643831215 0.196845054457554 0.207331881032036 0.199884537090310 0.198797457283121 3 3 + 5778915 5779345 5779036.091 5778882 5779369 + gene protein_coding_gene FALSE TRUE AT3G16930.1 unknown protein 0.123764402175268 1.46701313837886 0.170671092294551 1 0.377491802902724 4.47047408138572 0.123764402175268 0.038727240620881
AT2G03880_at 1.04331947147877 0.822482173519918 1.01824423753193 1.11890790525081 0.818099561281175 1.15073115132068 0.9466129534973 0.615688441468372 1.02879290118135 0.781616878583034 1.19282648035408 0.775555714605919 1.26765376878145 0.924604249053173 0.944066362987117 0.761546370370010 0.983831036555907 1.12407135349120 0.824242253958447 0.184701267957321 0.180439575343395 0.182315721403279 0.18427364754228 0.18373707841053 0.180615546204570 0.181312336329637 0.181015527302666 0.183758609553541 0.182265370592886 0.188064696659449 0.180740230836165 0.187198146614875 0.181376592512277 0.180439575343395 0.186875406863320 0.189689778417335 0.181475744354156 0.185976380544872 2 2 + 1182907 1183394 1183144.364 1181534 1183700 + gene protein_coding_gene FALSE TRUE AT2G03880.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G24000.1); similar to Os06g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057622.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.14401101315282 1.46688540119720 0.170705189188417 1 0.377335591657303 1.87925411771819 0.14401101315282 0.0914176054272064
AT3G25910_at 8.63386471057284 9.0221046828098 8.70090875839612 8.78843359556978 9.1775582505825 9.0967230123694 8.37013769412336 8.62227381679289 8.45452430107928 8.8570663771369 8.75672739697741 8.93044002390904 8.76348023073216 8.89380914157658 8.44505442564051 8.99542822811484 8.58482841734563 8.71163102599273 8.96670515426559 0.12747162890363 0.12347879311075 0.133647952178572 0.128752523809005 0.121618272997651 0.132003848319470 0.126505180144829 0.129782317208087 0.145841166528819 0.124777409182244 0.126437112464651 0.123465870832739 0.127291259581651 0.124196523552788 0.123410676926058 0.123364869992674 0.142913110446340 0.12381339221319 0.125427823989111 3 3 + 9491643 9492119 9491878.182 9490458 9492367 + gene protein_coding_gene FALSE TRUE AT3G25910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24740.2); similar to TRAF-like [Medicago truncatula] (GB:ABE92615.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.139776797640127 1.46673808070982 0.170744520688117 1 0.377155442601886 17.5613039678754 0.139776797640127 0.0827226333531714
AT2G02150_at 4.23166577543754 3.87412928735065 4.13803392687359 4.20202280314062 3.95810030954802 4.62158896025629 3.58351173458763 3.86535139749361 3.94363709808427 3.6299726501185 3.85122287367503 3.34892724654023 3.4613526836083 3.21932333715755 4.12576996444789 3.55373941712862 4.11268087765525 3.42411285462996 3.33021125025534 0.265121649507731 0.265121649507731 0.276225514900372 0.275997015373367 0.268643769371714 0.267946194724308 0.267254425084572 0.270222417402478 0.283307913073458 0.280021963744596 0.274039986165632 0.265121649507731 0.265121649507731 0.270088365787073 0.265121649507731 0.267275254806878 0.272256637321942 0.265121649507731 0.267399173027933 2 2|0 -|/ 547921 548294 548088.167 547260 552228 - gene protein_coding_gene FALSE TRUE AT2G02150.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G01740.1); similar to Os06g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057887.1); similar to putative fertility restorer homologue [Oryza sativa (japonica cultivar-group)] (GB:BAD54485.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.171903054303293 1.46655988930769 0.170792104433212 1 0.376937558939415 7.69517460250669 0.171903054303293 0.139690352979425
AT1G14060_at 2.90427820797467 3.06592302719167 3.12995177420259 3.53789821374708 2.72492548577034 2.95578242086966 3.43838201685087 2.87136922834738 2.35284234666077 2.30118772718548 2.52450123406714 2.69513344063013 2.66948127544581 2.38486963182631 3.05349563359539 2.32956381947923 2.55611949387536 2.84519208242262 2.29902957610018 0.204753278968302 0.192764665886225 0.198950771361106 0.194902901738841 0.192764665886225 0.196006081051474 0.201840946285919 0.203704664196543 0.207343706853541 0.198106113299145 0.193555485924088 0.193770603531007 0.199665923343615 0.198191212702396 0.194742342816710 0.195144746771087 0.197627815939940 0.207827562605033 0.192764665886225 1 1 - 4817457 4817864 4817684.909 4817141 4818017 - gene protein_coding_gene FALSE TRUE AT1G14060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57640.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84332.1); similar to Os03g0647400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050772.1); similar to Os07g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058928.1); contains InterPro domain GCK; (InterPro:IPR012891) 0.165879689995937 1.46549086496409 0.171077811886816 1 0.375630765416429 5.55355436006923 0.165879689995937 0.130349084364561
AT3G12360_at 9.601434642483 9.71568819272775 9.68808432893007 9.76762245978317 9.896336658633 9.62978930015853 9.04465792515643 9.17012525022646 9.5684835202166 9.22713194111742 9.34676517387361 9.2567933745925 9.21083278184984 9.40235180981524 8.99416912032766 9.30366124720423 9.16848013559495 9.29818223986584 9.26157072919501 0.107295813641468 0.109637782725238 0.109851763322225 0.114436725685609 0.111029445417655 0.110018622312506 0.110345226318409 0.106620491775648 0.112675450447696 0.110048126599551 0.108511458333757 0.107075186704785 0.107759859799538 0.113662190091336 0.108845574673952 0.108961810574812 0.111312732829416 0.109412943754461 0.107863344610452 3 3 + 3936013 3936475 3936266.364 3934085 3936701 + gene protein_coding_gene FALSE TRUE AT3G12360.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G09550.1); similar to Os03g0281000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049740.1); similar to Os01g0837000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044735.1); similar to hypothetical protein, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAN64471.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.128870386387631 1.46529449399552 0.171130338389203 1 0.375390784722603 18.8642422858790 0.128870386387631 0.0563876075538978
AT1G05890_at 7.92201938061645 7.66488039731534 8.0499633653373 7.82990599967684 8.979360359116 8.34853082707092 7.53192325427865 6.62762152972925 7.46046006811499 7.30165172039398 6.9865683611815 7.04914316950238 6.97768734644236 7.31059095850727 6.4224503351326 7.59011820282755 7.3284944377147 6.96132081022344 7.78842901978169 0.207393325789965 0.20960171042989 0.203174267685108 0.209167848301268 0.201365526346451 0.209767412311479 0.204338097740289 0.203352722286548 0.218653350457840 0.202056024810559 0.211491747374877 0.208006018669120 0.218683163596621 0.202001612521839 0.207459301848567 0.207731874645787 0.207500844822967 0.217597788628754 0.201155212033936 1 1 + 1782685 1784133 1783537.909 1779356 1784521 + gene protein_coding_gene FALSE TRUE AT1G05890.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G65430.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G31760.1); similar to IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) [Arabidopsis thaliana] (TAIR:AT2G31510.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); similar to ARIADNE-like protein [Musa acuminata] (GB:AAR96008.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.213389381954968 1.46518366346421 0.171159990100093 1 0.37525535025597 15.1668474585368 0.213389381954968 0.199595371268626
AT4G39430_at 1.93024477595943 1.71041265743599 2.48514127037652 2.22967225633852 2.20621564738011 2.00450498302102 2.07988149347068 2.00781389178275 2.68892941989204 1.5143422192227 1.61753861011588 2.02230113731544 2.03180440934888 2.04286187151166 1.86569563712782 1.89691464517805 2.24474030602823 2.25829007015082 1.88540028310051 0.202096347875273 0.211218611291113 0.197986599847887 0.198581244872462 0.196192076721539 0.196147297563911 0.195857098274433 0.195857098274433 0.199407466863321 0.202875785398633 0.195857098274433 0.200569021892808 0.200452594616624 0.201071085098639 0.205471844574874 0.197537085800558 0.204927312232213 0.206065968510886 0.205202027408125 4 4|0 +|/ 18344145 18344951 18344551 18343008 18345021 + gene protein_coding_gene FALSE TRUE AT4G39430.1 unknown protein 0.133628181529423 1.46484299452387 0.171251160505290 1 0.374839095368471 4.09527369359672 0.133628181529423 0.069107448630149
AT1G28960_at 5.28107707661182 5.69823235554728 5.37197704755847 5.48929716764399 6.72317217759463 5.71061262024444 5.6809981579837 6.08163297346695 5.01555314800592 5.08728514767568 5.55033554816682 5.2982556031762 5.47187682720867 5.87927579320278 4.9922717866916 5.97277746585738 5.74134861241784 5.27661930184526 5.58668144703015 0.255245028369978 0.243274932444112 0.260591350377756 0.246575552813589 0.256219361979993 0.262047742073539 0.247762427228536 0.257312227830028 0.247410541209769 0.250235058348194 0.247417534685908 0.250964599133895 0.254825501397014 0.252348921236118 0.242355883223516 0.244441759653728 0.250517667276789 0.245218336527749 0.25831058138483 1 1|0 -|/ 10110154 10111270 10110666.8 10109486 10111646 - gene protein_coding_gene FALSE TRUE AT1G28960.1|AT1G28960.2|AT1G28960.3|AT1G28960.4|AT1G28960.5 ATNUDT15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase Identical to Nudix hydrolase 15, mitochondrial precursor (EC 3.6.1.-) (AtNUDT15) (NUDT15) [Arabidopsis Thaliana] (GB:Q8GYB1;GB:Q67YK3;GB:Q9SHQ7); similar to ATNUDT22 (Arabidopsis thaliana Nudix hydrolase homolog 22), hydrolase [Arabidopsis thaliana] (TAIR:AT2G33980.1); similar to Os08g0375900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061674.1); similar to Os05g0209400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054910.1); similar to mutT/nudix family protein [Pseudomonas syringae pv. phaseolicola 1448A] (GB:YP_273603.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.215642407720757 1.46428535698254 0.171400485997210 1 0.374157866164330 11.1309674628604 0.215642407720757 0.202818858873156
AT1G05740_at 2.31416581265971 2.36981569506581 2.19959187813402 1.99907472435472 2.15331168176859 2.08710355576033 1.74612815994959 2.29764795054083 1.7765967738813 2.38865052911103 3.02913410402946 2.52161413848684 1.96090980661785 2.85440608885010 2.79346948974364 3.08830675173993 2.2192256278259 1.97799801041746 2.38762329860156 0.238330803221227 0.237558200680693 0.238565239428094 0.241467597241073 0.244411410255274 0.244133125306899 0.24718090207929 0.255781616735137 0.242326827989327 0.237558200680693 0.244531497757543 0.247952577938276 0.250212805917627 0.248022595058706 0.250481600224837 0.244411747632567 0.249321240672432 0.243190332703559 0.240704733881694 1 1|0 +|/ 1720673 1721281 1721017 1720673 1721308 + gene protein_coding_gene FALSE TRUE AT1G05740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05730.1); similar to PREDICTED: similar to CG5323-PA [Canis familiaris] (GB:XP_855482.1); similar to Os11g0256200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067634.1); contains InterPro domain Protein of unknown function DUF842, eukaryotic; (InterPro:IPR008560) 0.149586928566516 1.46402302964843 0.171470771105468 1 0.373837455717781 4.5158165336518 0.149586928566516 0.102652437308082
AT4G25010_at 1.37522333753703 1.49862979351986 1.84055231852694 1.59891821963699 1.19500381495710 1.29272787146655 1.16948708284308 1.08379586988577 1.25802098733020 0.931224441008746 1.09768985672239 1.14951045042558 0.717131698832334 0.936090070533077 0.821377650237173 1.28628197230184 1.63882478105012 1.11236432043603 0.931668895235464 0.210702769774700 0.218424025622902 0.214720838599193 0.215783221324136 0.210635279739767 0.222690711071680 0.212867782344365 0.219385524583334 0.215499621800606 0.221995887063909 0.208878866624153 0.212973487822092 0.216722695590333 0.209525603161536 0.217770638051401 0.209720845497214 0.226491695034793 0.215954238580783 0.221423681578875 4 4 - 12854704 12855870 12855256.091 12854395 12856551 - gene protein_coding_gene FALSE TRUE AT4G25010.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT5G50800.1); similar to Os11g0508600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067955.1); similar to N3 like protein [Medicago truncatula] (GB:CAC44123.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.127310305371485 1.46396349095538 0.171486726678700 1 0.373764739423788 2.44939910084273 0.127310305371485 0.052063048034295
AT3G24495_at 1.63948749071683 1.42914300680232 2.02369230186837 1.91631963456756 1.18795766178205 1.43438513688281 1.73295552501190 1.50856136684478 1.05663712914736 1.37414006113053 1.76120901271614 1.48138184967665 1.73505116614092 1.35784298644565 1.41523049017801 1.21337687021028 1.36571444893793 1.34707681606408 1.33204227271942 0.185916711359437 0.180321315338188 0.181901231822788 0.178741692199719 0.183985270144750 0.182178771458975 0.181501785583167 0.184064375270615 0.189435702166071 0.183741821596861 0.183148230152771 0.178143740035207 0.192424201607762 0.179867124320219 0.185275028795388 0.182217719857785 0.181490113102470 0.184360527188485 0.179216450025758 3 3|0 -|/ 8912459 8913074 8912699 8912350 8918153 - gene protein_coding_gene FALSE TRUE AT3G24495.1 MSH7 (MUTS HOMOLOG 6-2); ATP binding / damaged DNA binding encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts. Identical to DNA mismatch repair protein MSH6-2 (AtMsh6-2) (MutS homolog 7) (MSH6-2) [Arabidopsis Thaliana] (GB:Q9SMV7;GB:O22372;GB:Q9SNZ4); similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to MUS2 protein [Zea mays] (GB:CAB42556.1); similar to MUS2 protein [Zea mays] (GB:CAB42555.1); similar to MutS homolog 7 [Triticum aestivum] (GB:AAM13399.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain MutS III; (InterPro:IPR007696); contains InterPro domain MutS II; (InterPro:IPR007860); contains InterPro domain DNA mismatch repair protein MutS, N-terminal; (InterPro:IPR007695) 0.134194568572506 1.46392143653061 0.171497997466490 1 0.37371337830788 2.9660045702489 0.134194568572506 0.0706887378033604
AT4G12640_at 3.66375393623052 3.68733904094562 3.67706573988855 3.59554296588242 3.94525233621996 3.81732173117076 3.49183248139345 3.59902387789422 3.64833546515992 3.65164256043373 3.64175804379308 3.65470407904486 3.77589699882818 3.51954450068701 3.90027099887149 3.57372117721555 3.38051963888634 3.59831442347786 3.30437343999669 0.161781426391269 0.157924382313682 0.160433678148317 0.159458849742599 0.157021563940867 0.163333525176407 0.154801215765029 0.155850321462124 0.158587624417347 0.161864994719665 0.157660291091316 0.161100845333676 0.154080491184752 0.158229815613645 0.154770052616029 0.156473975940534 0.157761929856287 0.157407152740814 0.155800811420565 4 4 + 7462826 7467575 7465340.75 7462596 7467859 + gene protein_coding_gene FALSE TRUE AT4G12640.1 RNA recognition motif (RRM)-containing protein similar to FPA (FPA) [Arabidopsis thaliana] (TAIR:AT2G43410.4); similar to Os09g0298700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062811.1); similar to RNA-binding re (GB:ABE89501.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain SPOC; (InterPro:IPR012921); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.122057884955787 1.4638923805558 0.171505784977026 1 0.373677892767410 7.26732904093518 0.122057884955787 0.0324025877044350
AT4G14970_at 1.19239028457151 1.45234804770159 1.30686972168695 1.17094691517800 1.16066114429762 1.19325384187641 1.57363494779993 1.49403876497144 1.67012772917897 1.56044050079265 1.56044057184918 1.74295813440046 1.58897695709518 1.58507693878620 1.65236205576437 1.28748558089791 1.01722002758591 1.52921045594207 1.36063024903167 0.186327586260542 0.193871733868908 0.190471473989332 0.186849795693279 0.189226733386692 0.187965274446682 0.189217249236753 0.187250461017924 0.184703608907074 0.191732662460495 0.184703608907074 0.187762068812718 0.193681911653946 0.189381031657452 0.185773810364500 0.188112897444977 0.197418742986283 0.187681278836484 0.18672796284541 4 4|0 +|/ 8559942 8561637 8560474.4 8553851 8561661 + gene protein_coding_gene FALSE TRUE AT4G14970.1 similar to putative fanconi anemia, complementation group D2 [Oryza sativa (japonica cultivar-group)] (GB:BAD31595.1) -0.127551629106154 -1.46360798620735 0.171582023601691 1 0.37333059095842 2.83095087515606 -0.127551629106154 0.0529023562080539
AT3G12480_at 7.6502967940751 7.2424939960725 7.26044629780003 7.28463464497983 7.5137140864382 7.21637123661106 7.35573308479509 7.35132092840621 7.17366446099354 6.63299604539522 7.06705158913294 6.64084028682987 6.75156092511913 7.14095535707362 6.40826649000219 7.1182068029017 6.51189414916277 6.60791521312021 7.1426965225454 0.199368414130234 0.209960369978375 0.199196936555652 0.196425680123508 0.212286468852397 0.209673435973987 0.210214817818211 0.204093942269172 0.208165585889974 0.198245503935584 0.208513880136959 0.196972069082455 0.201305009854713 0.206372374748411 0.202284957107655 0.195194460381779 0.200712889764598 0.200324491947904 0.204268557288802 3 3 + 3959526 3960214 3960013.364 3957784 3960479 + gene protein_coding_gene FALSE TRUE AT3G12480.1 transcription factor, putative similar to repressor protein-related [Arabidopsis thaliana] (TAIR:AT5G19490.1); similar to At3g12480-like protein [Boechera stricta] (GB:ABB89765.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.141726146178432 -1.46358920714035 0.171587058793366 1 0.373307659526203 14.2413540643035 -0.141726146178432 0.0874432108891428
AT4G35230_at 9.12181195464649 9.1158725728712 9.32281876601435 9.38537219908556 9.5080414880127 9.50432864205496 8.37127469816527 8.38314116605138 8.94515692668617 8.92616536411984 8.63943447354888 8.48645761070007 8.55181379182886 8.45129287313907 8.61253579906686 8.55381381310115 8.42882388095248 8.58911900071666 9.07851005370452 0.131410398754252 0.129855297403175 0.131526018672954 0.131137501892863 0.133162561248794 0.136288071019610 0.141452148770060 0.134603494502422 0.149235687959520 0.137173150485994 0.131732702235715 0.137500673195912 0.133359593936890 0.138297907434624 0.133909894827507 0.132893264037411 0.135767243873460 0.137742927519048 0.132399277790540 4 4|0 -|/ 16755363 16756043 16755619 16755123 16758096 - gene protein_coding_gene FALSE TRUE AT4G35230.1 protein kinase family protein similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G59010.1); similar to Os03g0132800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048870.1); similar to protein kinase-like protein [Oryza sativa] (GB:AAG13605.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.118999566534944 1.46353512865427 0.171601559449229 1 0.373241624440777 17.8503021126387 0.118999566534944 0.0110846970216534
AT2G19890_at 0.626801204624785 0.479009931613032 0.493273451275679 0.835710213780744 0.642216050332741 0.616334353895223 0.455367013163194 0.328744521751031 1.46018476681083 1.04977379437677 0.746593165184111 0.773853486884525 1.16086287038474 0.692465103727745 0.57151563089172 0.594628422615253 0.511684725318203 0.589214506780624 0.927448063996902 0.210163551460479 0.206171211651474 0.206565043985396 0.208967710368441 0.206217585522402 0.210755989556790 0.207528154551097 0.207409631687097 0.209910119809876 0.207614170678574 0.207722868843060 0.206361514194745 0.206171211651474 0.206171211651474 0.206171211651474 0.206563282557871 0.219267779636529 0.210299811550748 0.209253862438812 2 2|0 +|/ 8594589 8596499 8595866.667 8594326 8596719 + gene protein_coding_gene FALSE TRUE AT2G19890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62460.1); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) -0.133148559944191 -1.46313495062123 0.171708896107261 1 0.372753016945689 1.48513431623865 -0.133148559944191 0.0683091092804784
AT2G39770_at 8.85860256048994 8.9283778753256 8.37529886924097 8.29913240636015 8.57114715877658 8.30534932627979 9.06359532130259 9.15701968210773 8.84411229562208 8.84117299008085 9.3537624553489 9.40845526714809 9.25064002350695 9.33272389072154 9.30620960921474 9.30974185367615 8.82018090312278 8.81196721062113 8.83295180340327 0.112865120727746 0.111578042555292 0.114571823498076 0.114887308232618 0.114232552145651 0.121533096848386 0.114136266564148 0.115922478185631 0.121920102319700 0.114482611014478 0.109360672552847 0.112667264743501 0.109360672552847 0.118461270735287 0.114519754718750 0.110945891148454 0.121046581624845 0.120314342457736 0.116905376958841 2 2 + 16597258 16597661 16597484.636 16595780 16598063 + gene protein_coding_gene FALSE TRUE AT2G39770.1 CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis. similar to GDP-mannose pyrophosphorylase, putative [Arabidopsis thaliana] (TAIR:AT3G55590.1); similar to GDP-mannose pyrophosphorylase [Malpighia glabra] (GB:ABB53473.1); similar to GDP-D-mannose pyrophosphorylase [Viola baoshanensis] (GB:ABI48955.1); similar to GMPase [Medicago sativa] (GB:AAT58365.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.127184565503728 -1.46301033138669 0.171742333471395 1 0.372600877484029 17.7141266573381 -0.127184565503728 0.051929815947082
AT3G49220_at 8.59022996413772 8.67537053484686 8.48411118093227 8.66321146487036 8.6495797201187 8.32679918657659 9.56132700548422 9.65853587477317 9.33569913710793 9.02620172291441 10.2371831909266 10.2886438885335 9.79684377269804 10.2932926822214 10.4429491809333 10.3646218073356 9.39162058645817 10.2033983411615 9.45145509128803 0.115565098093229 0.113578673018648 0.124171169917513 0.117046128884724 0.110702845716293 0.130046791747787 0.111423781825003 0.111053003991014 0.122752088162866 0.109325130748896 0.11004937569845 0.108891425702652 0.114467870295501 0.112089823607607 0.114048534708930 0.109362315125983 0.116130137114526 0.113679866722185 0.110169141287184 3 3 + 18264089 18264592 18264359 18260761 18264824 + gene protein_coding_gene FALSE TRUE AT3G49220.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G53370.1); similar to pectinesterase inhibitor [Lycoris aurea] (GB:ABJ99595.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE82757.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE80825.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.132880037080352 1.46295398044885 0.171757455169416 1 0.372532085051091 18.5253645323276 0.132880037080352 0.0676824435299679
AT3G51140_at 8.1268416955089 8.53333606927204 7.89716943021885 7.93894621944237 8.39440908795382 7.82068619002347 9.0187477136524 8.99209046138266 8.25848475429747 8.23255611877249 8.42675041347081 8.73526964640518 8.11312508920413 8.50135380881293 8.93955184901163 8.60823733376432 8.24650309227899 8.4293962446095 8.00696886960916 0.199031036821779 0.188598308142277 0.209810492710998 0.202627790758093 0.191321573796446 0.209914598644909 0.197302545090198 0.187381058298296 0.212170643178755 0.190527107369692 0.189252263643253 0.186096308192314 0.19452821748328 0.194750113173953 0.193428832151177 0.186866238245771 0.215133000255639 0.187898097178254 0.198061598136635 3 3 + 19009738 19010378 19010089.818 19008579 19010883 + gene protein_coding_gene FALSE TRUE AT3G51140.1 similar to CDF1 (CELL GROWTH DEFECT FACTOR 1), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G23040.2); similar to Expressed protein, putative [Medicago truncatula] (GB:ABE85109.1); similar to Os03g0255200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049592.1); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918) -0.160465532954694 -1.46265118171779 0.171838730279247 1 0.372162461801330 16.673291699559 -0.160465532954694 0.121982247794435
AT1G68740_at 5.88421289957774 5.74930702071547 5.75151114984002 5.74165514004775 4.73504808866086 4.64208283979661 5.87456941152557 6.09777831463214 3.60961396914704 5.12221798250824 4.43531279583437 4.54219522863707 5.07777948693214 4.64269941693931 3.94339468282849 4.32559563273483 5.04241500445272 4.55644613235171 3.68372903351885 0.261485545630999 0.258736262377593 0.255800530355114 0.256295853734947 0.248511990993958 0.267209805273306 0.268358626799815 0.252833791442413 0.268144487908727 0.246974541384315 0.246974541384315 0.264526225719099 0.252093808433920 0.250273110777814 0.265921096753397 0.25289330730722 0.259947808346474 0.276262844290363 0.246974541384315 1 1 - 25816422 25817260 25816896.455 25816112 25820320 - gene protein_coding_gene FALSE TRUE AT1G68740.1 EXS family protein / ERD1/XPR1/SYG1 family protein similar to PHO1 (PHOSPHATE 1) [Arabidopsis thaliana] (TAIR:AT3G23430.1); similar to putative PHO1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44936.1); similar to Os06g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057682.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.125841568914484 -1.46177552541283 0.172073952704251 1 0.371093834332009 9.91414567108962 -0.125841568914484 0.0479462894901456
AT3G58010_at 8.3473604577748 8.39724579588537 8.36019190085296 8.1547509061656 8.83734483178719 8.39435201508875 8.87649082593409 8.86508003532795 8.80458386879752 8.74784654038207 8.53057798556596 8.7098905190953 8.45920289485861 8.5622996518519 8.39711873687325 8.61066917808927 8.36049982941048 8.82025396846006 8.40398527405937 0.144951883875382 0.141715046549091 0.150794919108451 0.149544324649463 0.145808706991141 0.147742740306931 0.150766283148185 0.146333630272803 0.153640664343759 0.140455781176985 0.145836935026047 0.140041848274961 0.136301019892548 0.151524122123569 0.161895159902425 0.136301019892548 0.148163360602218 0.142221637276858 0.138796285328676 3 3|0 -|/ 21486955 21487769 21487391.333 21486782 21488546 - gene protein_coding_gene FALSE TRUE AT3G58010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42130.4); similar to Os04g0665800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054180.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69760.1) -0.140354415405492 -1.46170516225033 0.172092865880404 1 0.371007982892935 17.1333284244047 -0.140354415405492 0.0849674416354439
AT1G56570_at 2.04324257720407 1.84649921532082 1.83028996615196 2.01218974353694 1.89571765866284 1.86803199055466 2.20266989152428 1.96094565082305 2.19145789311765 2.49475371838670 1.76001054582583 1.89602855672068 1.90736876859918 1.82952603347549 2.4938177621462 2.06600656621959 1.93245657275362 2.13723340535629 1.77159597750630 0.178826877089927 0.169347014827434 0.172057446833482 0.169347014827434 0.178110064160679 0.181119243374612 0.171499869912579 0.175619934089994 0.176253968832163 0.173406197074168 0.173151224501441 0.178237003661372 0.176988395913726 0.172615843763867 0.172060583463168 0.170057641728389 0.176760912368559 0.169414800052213 0.169347014827434 1 1 + 21200795 21201337 21201107.091 21199469 21201386 + gene protein_coding_gene FALSE TRUE AT1G56570.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to putative PPR986-12 [Oryza sativa (japonica cultivar-group)] (GB:BAD86909.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.130789248637282 -1.46151863977712 0.172143010541398 1 0.370780416132074 4.03515261475099 -0.130789248637282 0.0626334973966982
AT4G26920_at 2.33686082018701 2.53455334869089 2.5190333779488 2.359622395558 2.26484160719469 2.49102978165340 2.29910947803097 2.17920170517140 2.13171455267864 3.00240744152772 2.83531382835070 2.68410157349736 2.46318524575055 2.99415683658764 3.16184880196612 2.46871123120275 2.83595826302512 2.69470848933427 2.59704025044801 0.259032815630275 0.257131895834762 0.263776235365467 0.265063583577848 0.263315229955409 0.264482097225422 0.256694166580381 0.252357702434972 0.272521483838482 0.260768007507011 0.254763730885076 0.258265020473141 0.256239779769632 0.254559407919411 0.255107558525585 0.252774590006250 0.252357702434972 0.255580200200065 0.252971997079003 4 4 + 13526503 13527051 13526827.909 13525037 13527178 + gene protein_coding_gene FALSE TRUE AT4G26920.1 similar to homeobox protein-related [Arabidopsis thaliana] (TAIR:AT5G07260.1); similar to baby boom interacting protein 2 [Brassica napus] (GB:ABA70760.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) 0.130697202365755 1.46145416715728 0.172160346248383 1 0.370701760654164 5.04518262193728 0.130697202365755 0.062403704066472
AT1G23010_at 1.2837981069225 1.65963968168526 1.37018324593727 1.54297450380930 0.819400873256388 1.06549528261815 0.446748994914175 0.765775673532303 0.846457940937803 1.06335464550815 0.874292602139707 0.974969175978584 0.959310800430652 1.19896828653593 0.781527084335764 0.733795239180378 1.10917647656086 1.45438130222289 0.717132443729172 0.195098361207629 0.193437725187268 0.201009772207298 0.192137311164131 0.191842278045209 0.194615502717701 0.196530487170141 0.193501425519301 0.206225027588597 0.197136017368557 0.191617862319344 0.191764787901655 0.200505024458728 0.198822804981055 0.195257602164316 0.196706153620331 0.194997035665677 0.198138429566344 0.193946187656794 1 1 + 8148878 8149545 8149184.182 8147253 8149802 + gene protein_coding_gene FALSE TRUE AT1G23010.1 multi-copper oxidase type I family protein similar to multi-copper oxidase type I family protein [Arabidopsis thaliana] (TAIR:AT1G71040.1); similar to Os01g0126100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041895.1); similar to putative spore coat protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB21194.1); similar to spore coat protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD52537.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.147838569836552 1.46116269401612 0.172238737551334 1 0.370346196357699 2.06247752749182 0.147838569836552 0.0999312675670674
AT2G25210_at 6.98600576701502 7.33975969463261 6.44305770290628 6.56332696872999 6.52028565388677 6.43414854717077 6.72280298645906 6.99456154729065 6.47984035067092 6.34672864814628 6.868538573504 7.47228712702409 6.4549940087015 6.61694180699904 7.57143049790722 6.40638845335505 6.3190437959326 6.22702550958152 6.66954632574363 0.13523296296075 0.133235323838764 0.132115579233552 0.136029898195994 0.130301290442841 0.132710454312437 0.135280199807097 0.129917754457360 0.133508862635379 0.130193204457897 0.139006673522643 0.131370285378353 0.132427975381026 0.133889181188297 0.132087731292919 0.130008387535010 0.136962983008805 0.128965802071866 0.128355368047700 2 2 + 10747262 10747434 10747410.182 10746934 10747631 + gene protein_coding_gene FALSE TRUE AT2G25210.1 60S ribosomal protein L39 (RPL39A) Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39C) [Arabidopsis thaliana] (TAIR:AT4G31985.1); similar to putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD19088.1); similar to 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD72315.1); similar to Os02g0796900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048392.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) -0.138600833618598 -1.46116148916721 0.172239061657054 1 0.37034472667295 13.3708867734177 -0.138600833618598 0.0813317989311212
AT4G20790_at 0.534827199293153 0.886786753541457 0.346816544763012 0.58512518968749 0.712006821277441 0.915208847791746 0.583502585892553 0.750623495400847 0.429720208130807 1.16414999130044 0.622802589270759 0.580649123835896 1.07875294481476 0.443354889961954 0.475181872781827 0.53796719144138 -0.131146475607548 0.854342196655384 0.778080203332302 0.196369706732364 0.193962837993289 0.199945926344330 0.201115413957065 0.204460522364591 0.195296589957923 0.193962837993289 0.197970988641718 0.201031245366487 0.196403736814777 0.195794021558175 0.208764880341284 0.204359459480696 0.194549211967148 0.194413209210787 0.196768278900434 0.20971643587315 0.198091794960373 0.20413770576715 4 4 - 11134789 11135358 11135078.091 11134786 11136434 - gene protein_coding_gene FALSE TRUE AT4G20790.1 leucine-rich repeat family protein similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.2); similar to putative bacterial blight resistance protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82413.1); similar to Os01g0228200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042475.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.141028875131147 -1.46105620625785 0.172267384890155 1 0.370216304715154 1.33855626765537 -0.141028875131147 0.0865077745262531
AT3G60020_at 1.41383628638351 1.74353833836297 1.37442184118116 1.76451435470270 1.24886214181352 1.41043723192255 1.13435079889347 1.62756814423978 2.13503133585198 1.70347964225911 1.61267891029050 1.26983433289200 1.79944042038637 1.43857885670606 1.70787612334531 1.53756483879157 1.63675896134646 1.73369234999700 1.82309130354186 0.168435053203639 0.167550317579759 0.175429083736200 0.168288023414534 0.169901603310543 0.168786084727533 0.176473198781647 0.170242594508473 0.174992965791109 0.174019203436202 0.166739990660876 0.168207238079694 0.167571850314200 0.173355672887462 0.166265176517397 0.170360692029364 0.170071684695042 0.170572388191601 0.166265176517397 3 3 - 22175896 22176213 22176057.364 22175821 22176282 - gene protein_coding_gene FALSE TRUE AT3G60020.1 ASK5 (ARABIDOPSIS SKP1-LIKE 5); ubiquitin-protein ligase similar to SKP1 (ARABIDOPSIS SKP1 HOMOLOGUE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G75950.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) -0.162706080448260 -1.46092975800760 0.172301407285259 1 0.370062073580314 3.20431807207265 -0.162706080448260 0.126014868958893
AT3G58780_at 2.02671931946960 2.04081243943405 2.3817585578375 2.40504686148325 2.17215082808981 2.10160570707324 2.08670634345871 1.99329082658833 1.85295294209574 1.99982522917793 1.43223912838151 1.97000471341787 2.09681718960766 2.19384595133255 1.84386238730336 1.97629844903565 1.90691737692463 2.42696245606179 2.05586104690669 0.196424975361062 0.202050132475824 0.202106368174628 0.199555969117381 0.199326323435657 0.200340018155311 0.197188851930248 0.199666222144906 0.198308515290554 0.204161911134761 0.20073002731437 0.19876333023766 0.204821595421469 0.196424975361062 0.202470414464715 0.198599951808504 0.206626058180983 0.199232934852824 0.202596228327651 3 3 + 21750280 21752689 21752297.727 21749437 21752884 + gene protein_coding_gene FALSE TRUE AT3G58780.1|AT3G58780.2 SHP1 (SHATTERPROOF 1); DNA binding / transcription factor|SHP1 (SHATTERPROOF 1) One of two genes (SHP1 and SHP2) that are required for fruit dehiscence. The two genes control dehiscence zone differentiation and promote the lignification of adjacent cells. Identical to Agamous-like MADS-box protein AGL1 (Protein Shatterproof 1) (AGL1) [Arabidopsis Thaliana] (GB:P29381); similar to SHP2 (SHATTERPROOF 2), transcription factor [Arabidopsis thaliana] (TAIR:AT2G42830.1); similar to SHATTERPROOF1 [Brassica napus] (GB:AAK00646.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.119790153415641 1.46073483584024 0.172353864636350 1 0.369824340455995 4.12621879171343 0.119790153415641 0.0207982866317150
AT3G27650_at 1.61820395669327 1.90208592768526 1.64437544064008 1.52121605335299 1.48543179494841 1.45387671533087 1.59798084336751 1.15151171474945 1.26001217954503 1.26577240244313 1.55850683835711 1.69005372647732 1.91456599936652 1.58376503114261 0.903948300372712 1.49014341147973 1.63289959350493 1.94727112504998 1.25227451410194 0.184902694413099 0.184639056914933 0.184742247938530 0.191974564263759 0.184639056914933 0.189317502728168 0.186797442015004 0.186069513019264 0.194065180501433 0.185237996212053 0.193212845749658 0.189393061250756 0.193200742333155 0.185338445938674 0.200972697207996 0.184639056914933 0.187745409789209 0.187741286809673 0.186440333009137 3 3 + 10240019 10241527 10241229.818 10239783 10241848 + gene protein_coding_gene FALSE TRUE AT3G27650.1 LOB domain protein 25 / lateral organ boundaries domain protein 25 (LBD25) Identical to LOB domain-containing protein 25 (LBD25) [Arabidopsis Thaliana] (GB:Q8L8Q3;GB:Q8W1D6;GB:Q9LVX4); similar to LOB (LATERAL ORGAN BOUNDARIES) [Arabidopsis thaliana] (TAIR:AT5G63090.4); similar to LOB domain-containing protein 25 (GB:Q8L8Q3); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.144785305816523 1.46063402046735 0.172381001366792 1 0.369701390915041 2.97158394847043 0.144785305816523 0.0941658493818255
AT1G65440_at 6.64940097210538 6.2558526074562 6.89607436106943 6.08995300930698 5.90698598103841 5.83506554055836 6.03750363798087 5.51694414406641 7.06169183801918 7.32608297127778 6.92243772861558 6.51727558020091 6.56162843833747 6.38903718563352 6.27693747202829 6.84494964290229 7.25994628124225 6.40428446213126 6.94542880607704 0.201224986630809 0.203943971993034 0.200734544276854 0.205872478086603 0.206135264458252 0.203488722159067 0.201042695928022 0.201397859840089 0.205440004040946 0.198755026173365 0.198537280425259 0.20474322651011 0.198537280425259 0.201434701609507 0.204455546884916 0.200487936470608 0.200473840548013 0.209299196998528 0.211797954737871 1 1 - 24310632 24311374 24310920.273 24310330 24318236 - gene protein_coding_gene FALSE TRUE AT1G65440.1|AT1G65440.2 GTB1 (GLOBAL TRANSCRIPTION FACTOR GROUP B1); RNA binding / hydrolase, acting on ester bonds Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. similar to RNA binding / hydrolase, acting on ester bonds [Arabidopsis thaliana] (TAIR:AT1G63210.1); similar to SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABD32884.1); similar to Alcohol dehydrogenase, zinc-containing; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE91552.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Resolvase, RNase H-like fold; (InterPro:IPR006641) -0.198455695156901 -1.46043810710104 0.172433746299704 1 0.369462480104661 13.0275375170366 -0.198455695156901 0.179915828727179
AT2G27080_at 1.51756331053082 1.29004280484863 1.99162912955367 1.77724894680934 1.92068804902034 1.59078383022917 1.85239413155347 1.52819821139675 1.69838965120638 2.38069272684249 2.58417328086668 2.02102090281604 2.04883965304888 2.54715755348235 1.96515883199868 2.49344800955732 1.77312534072302 1.93165762792230 2.37567572426206 0.215061826699948 0.216764460796703 0.222048648721682 0.214672934258958 0.213871562981798 0.225198928459783 0.221776880635839 0.222661337678211 0.229453794202933 0.216260384652033 0.217641782687067 0.221627077379248 0.219664132629809 0.218858818223253 0.233817124811900 0.216892087643420 0.22080405335017 0.228136098183162 0.231038748087355 2 2 + 11573666 11574218 11573929.091 11571011 11574582 + gene protein_coding_gene FALSE TRUE AT2G27080.1|AT2G27080.2 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21130.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE82616.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21130.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE82616.1) 0.146012245134491 1.46032363246017 0.172464572204444 1 0.369322891073146 3.84464789382055 0.146012245134491 0.0966110471550694
AT4G32300_at 7.02820527429564 7.51239012261943 6.97643569096874 7.09396617788235 7.4829033342561 7.30637548105718 7.26506295825981 7.49679107590982 7.69238546789011 7.57956569842317 8.32863346121393 7.81989833125873 7.57215753462544 7.88104925355028 7.45086518440713 7.54204733935825 6.69238886336657 6.88513121248978 7.84657179816307 0.177631844383742 0.177631648708580 0.185982301678022 0.179281642155298 0.176747349191608 0.177758294890744 0.177082951642296 0.175881671046613 0.193303094395970 0.174895138119505 0.176208048081058 0.173099130028072 0.187556487581262 0.184866659920780 0.183345053973069 0.175952571251987 0.19236145747635 0.190697550389459 0.176787194409283 4 4 + 15601896 15602396 15602213.636 15599481 15602601 + gene protein_coding_gene FALSE TRUE AT4G32300.1 lectin protein kinase family protein similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT5G35370.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE91586.1); similar to protein kinase (GB:AAA33915.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD46526.1); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.147672555344216 -1.45979334814201 0.172607429355934 1 0.368676360585273 14.8841141239191 -0.147672555344216 0.0998794382735555
AT1G77730_at 1.20414066011915 1.25987402844762 1.42816932339484 1.29473200624560 1.05550708058691 1.06056302306012 1.33704349463808 1.38318065800580 1.90863153113065 1.57341044482642 1.54247826544382 0.894872270998553 1.67914240846150 1.13316041342175 1.72867551857730 1.25543250339946 1.31228611827266 1.57033569140454 1.15095857212495 0.207498600702832 0.199303222222374 0.206589264102400 0.200648287847854 0.199303222222374 0.202007635375925 0.199303222222374 0.207716668046818 0.203495187949691 0.20643722857003 0.202446109705188 0.209851543365336 0.208994826845111 0.199735657476282 0.204360866897651 0.205611729760212 0.202829602790717 0.201610312705858 0.200482509193906 1 1|0 +|/ 29219554 29220415 29219977.6 29219339 29220458 + gene protein_coding_gene FALSE TRUE AT1G77730.1 pleckstrin homology (PH) domain-containing protein similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.2); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to Os03g0704700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051024.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.120551234630344 -1.45975005044079 0.172619098098564 1 0.368623578069429 2.71984199169966 -0.120551234630344 0.0262826262044589
AT1G79090_at 7.07281125774951 7.05659909264599 6.33143811416035 6.73184293762512 7.07015103114682 6.29189423586444 6.53291405778001 6.70932707952784 6.17287853449994 5.61898911730456 6.25378822907006 6.43611223256519 6.61595185151689 6.22466892018885 6.19794079368805 6.95705048086236 6.54578979790173 5.84001939215971 5.56524957060198 0.224846856866614 0.219932683999176 0.22696203624981 0.223315541794222 0.22250354580621 0.229876623290739 0.221277226816105 0.225455057263785 0.232977011334472 0.224702442056455 0.22218672588322 0.226182978494095 0.224636499834196 0.230094438404677 0.226638172308280 0.219932683999176 0.232566815522135 0.228258757693647 0.219932683999176 1 1 - 29754535 29754987 29754775.909 29754006 29758200 - gene protein_coding_gene FALSE TRUE AT1G79090.1|AT1G79090.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22270.1); similar to Os02g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046960.1); similar to Os01g0769000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044369.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52714.1); contains domain gb def: YUP8H12R.29 protein (PTHR21551:SF11); contains domain FAMILY NOT NAMED (PTHR21551) 0.180814089607646 1.45966542183066 0.172641907477285 1 0.368520413590017 12.8094327023356 0.180814089607646 0.154532296565894
AT1G30700_at 0.816691407626867 1.05666692255659 1.66115386790252 2.20790019255331 1.45388607442797 1.80003541464258 0.805006777506913 0.858724299478145 1.32519893068066 1.71546131430345 1.07232967253137 1.17543428344149 0.792572217837612 0.607238443472018 0.651353795089697 0.856725418766665 1.04606579843402 1.11596713434056 1.43994910849252 0.188512391881997 0.192152920375989 0.191859487313503 0.193045899588310 0.193904391624403 0.192067522008263 0.189797965620271 0.190500922853794 0.195504696789379 0.194835855765139 0.190800215465976 0.191942043163251 0.202010684650509 0.191352622133154 0.207947599883602 0.192347629853971 0.199352207776953 0.197693296099693 0.191938172634231 1 1 + 10893821 10894221 10894021.455 10892552 10894554 + gene protein_coding_gene FALSE TRUE AT1G30700.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to carbohydrate oxidase [Lactuca sativa] (GB:AAL77102.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.158822964959885 1.45949257243984 0.172688502402623 1 0.368309717659908 2.53663176791089 0.158822964959885 0.119798924261317
AT3G50570_at 1.19704294304134 1.47737165954351 1.08001671611979 1.14919414545540 1.17336970093488 1.40764858712119 2.03867878367203 1.80574633070708 1.73910725455525 1.44980771070354 1.49346676781012 1.87480901434947 2.11868423989291 2.09306011397097 1.96050310741725 1.51045146798245 1.93893608594826 1.49566183048607 1.77737878019481 0.196985781585920 0.197150087377038 0.202348845940721 0.199258819729511 0.198746128180938 0.206450415355546 0.196628742788461 0.195995226975777 0.204947516891670 0.197375327517888 0.195995226975777 0.197996335366933 0.200549805949588 0.196930159276283 0.196067489758293 0.197461708545954 0.196140282839354 0.203123597010487 0.199797319485004 3 3 - 18777917 18778437 18778175.909 18777730 18778510 - gene protein_coding_gene FALSE TRUE AT3G50570.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44224.1); similar to hypothetical protein [Plasmodium falciparum 3D7] (GB:NP_705073.1) -0.135943655917758 -1.45868476142958 0.172906405963935 1 0.367325244261888 3.14919752180776 -0.135943655917758 0.0759301530584364
AT1G75510_at 8.21015293066242 8.15265998802425 8.24158975901823 8.16779853476597 8.1649066411202 7.8453318781235 7.89390101187573 7.724024310078 7.37847262271626 6.84136144162803 6.98186827448254 7.11944479306426 7.03426439186208 7.27774989085815 7.00204161025127 7.29015716618111 7.27319584905044 7.43355500316301 6.85109988884866 0.165289480110519 0.172025457094422 0.182289035484345 0.191073597949287 0.169427392782361 0.179278347035735 0.166653075818052 0.180321908834911 0.172475815383026 0.170133484383479 0.165347704257514 0.168168175703990 0.174318946614638 0.184881251993492 0.169414585980698 0.166591060811385 0.170601067071368 0.176244206719542 0.165224684823017 1 0|1 /|- 28351024 28351811 28351427.9 28350716 28352396 - gene protein_coding_gene FALSE TRUE AT1G75510.1 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein similar to ATP binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G52270.1); similar to putative transcription initiation factor IIF beta subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD82068.1); contains InterPro domain Transcription Factor IIF, Rap30/Rap74, interaction; (InterPro:IPR011039); contains InterPro domain Transcription initiation factor IIF, beta subunit; (InterPro:IPR003196); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.131306057198335 1.45855346748060 0.172941844106617 1 0.3671652704882 15.1501352684227 0.131306057198335 0.0646902097089664
AT1G51920_at 3.24169194967974 3.24098633971175 2.77444783037340 2.98569156435186 2.41855334548779 2.45883580371995 1.69767101950933 1.86635200659940 2.58339438379208 2.52123742312312 1.903394752913 1.48344968345302 2.46261047303899 2.13558194209981 1.36569928771402 1.71888906287817 2.00573054164167 2.3160411041782 1.86247620568596 0.246791712640115 0.242331531727497 0.250392003096591 0.254278611209255 0.23960261245721 0.232298465267038 0.234654837683569 0.24104731075711 0.242145555474676 0.235050178262976 0.241127116285032 0.238732124460749 0.248204469849255 0.25070512795557 0.236640582376563 0.234053374610469 0.2443387271248 0.246690489148837 0.240492220829982 1 1|0 +|/ 19297900 19298208 19298103.9 19297898 19298248 + gene protein_coding_gene FALSE TRUE AT1G51920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51913.1) -0.125368962217957 -1.45852025181429 0.172950810479555 1 0.367124800670234 4.70867570419082 -0.125368962217957 0.0472982061215946
AT1G35890_at 1.25117797786913 1.18383814373377 1.44753592981302 1.76450618795008 1.37449715650610 1.33967879298634 1.47165831602639 1.46819954126281 1.69991988350709 1.24998117918363 1.56790874511662 1.32350854054378 1.44971136001954 1.60752592658725 1.39704799748524 1.58010676423075 1.99955012983239 1.34741175820589 1.29632530548438 0.174151901686323 0.170361085362225 0.164585058781582 0.163978263501765 0.167396675035893 0.169280317696407 0.163978263501765 0.171354416547027 0.168050755029168 0.169829331218901 0.171023084068070 0.173884586839804 0.173786795366673 0.175489490863552 0.188310707202105 0.168038884162177 0.171165360319262 0.171679022369217 0.168799210253755 1 1 + 13342514 13343114 13342818.636 13342512 13343165 + gene protein_coding_gene FALSE TRUE AT1G35890.1 DNA binding contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.128261817725921 1.45831329799925 0.173006685377024 1 0.366872662467066 2.88738910184064 0.128261817725921 0.0564033652934571
AT4G16100_at 4.53198895213587 5.10972960214916 4.96937863819259 4.58942751628704 4.75156087717454 4.7141335311492 4.41094428840567 4.35373014848804 4.09813198099391 3.93816521352482 3.97703926116227 4.3278716037727 4.53523127508893 4.56814307839313 4.35938208979316 4.15245979612587 4.06543073214776 4.44128594924013 4.38429136797804 0.21058907335472 0.20757723670878 0.208037656226981 0.200726396308280 0.197716610759490 0.230183348680144 0.209729823731633 0.205280126678142 0.204748099560241 0.201916981034467 0.199794848383855 0.199574110499179 0.201506453708010 0.218129153427753 0.199369778519675 0.197716610759490 0.198710181052159 0.203456451173828 0.205531847550616 4 4|0 +|/ 9106597 9107823 9107356.667 9105731 9108169 + gene protein_coding_gene FALSE TRUE AT4G16100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49220.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO39871.1); similar to Os01g0306900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042847.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46235.1); contains InterPro domain Protein of unknown function DUF789; (InterPro:IPR008507) 0.158843089311363 1.45724324144047 0.173295832839246 1 0.365569347923414 8.90063752460497 0.158843089311363 0.120247637755610
AT3G13660_at 0.898028523400429 0.904452664560195 1.15689554063583 1.22545349134416 1.05656974589256 1.22403935188920 1.38281639493552 1.19819183740333 1.31755820999996 0.559594886901827 1.33855873800067 0.81655408457291 1.28131998507825 1.18677737408665 1.14913568546958 1.07971126278184 1.41963716523658 1.39265335135022 1.20983320516069 0.207761854205220 0.208656808224479 0.211886789228578 0.21137658073766 0.207015811319397 0.214169341767328 0.213820910788485 0.207818820328636 0.217616271991399 0.215806304335860 0.219451492826867 0.213353417805352 0.212726816896029 0.217603307971478 0.211489944189059 0.207015811319397 0.216691272198029 0.212902412538221 0.209637753010891 3 3 + 4465169 4465475 4465302.2 4464915 4465593 + gene protein_coding_gene FALSE TRUE AT3G13660.1 disease resistance response similar to disease resistance response [Arabidopsis thaliana] (TAIR:AT1G55210.1); similar to dirigent-like protein pDIR9 [Picea engelmannii x Picea glauca] (GB:ABD52120.1); similar to dirigent-related protein [Tamarix androssowii] (GB:ABE73781.1); similar to Os12g0174700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066288.1); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.124457599583414 1.45643495985909 0.173514517520935 1 0.364585281245023 2.24932538867911 0.124457599583414 0.0447518685967339
AT4G17560_at 8.91832470500043 9.06523344648314 7.76388062109974 7.86279356146991 8.98479281567596 8.45940197227291 9.19351236087141 8.88313549129107 8.80608567583869 9.35423520115397 9.54886609535501 10.0534975649433 9.32772307696424 9.37985888963777 10.3197716419434 9.6350798919574 9.51251405710044 8.69566995091785 9.1915863568409 0.140432002705004 0.140152484756847 0.145449275031841 0.157653701847548 0.143789675734412 0.151321096200018 0.143000640487739 0.140152484756847 0.163833961293384 0.143723038176699 0.143423889392696 0.140679832753662 0.140152484756847 0.148532751467925 0.140152484756847 0.141271106271065 0.14046550870764 0.149211481580069 0.144048162698272 4 4 + 9780524 9781727 9780838 9780292 9782196 + gene protein_coding_gene FALSE TRUE AT4G17560.1 ribosomal protein L19 family protein Identical to 50S ribosomal protein L19-1, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8W463;GB:O23597); similar to ribosomal protein L19 family protein [Arabidopsis thaliana] (TAIR:AT5G47190.1); similar to plastid ribosomal protein L19, putative [Brassica oleracea] (GB:ABD65070.1); contains InterPro domain Ribosomal protein L19; (InterPro:IPR001857) -0.152757011728653 -1.45576209127987 0.173696745042371 1 0.363766346172793 17.9795969004607 -0.152757011728653 0.109959223116602
ATCG00700_at 7.61041189290641 8.4963318840247 8.29065111149913 7.97785941002708 9.02802153924593 7.1836900776149 9.53302025005674 8.22846508080278 9.06331543089967 9.19905710199002 9.10754553449686 9.92856948667922 8.37768831175657 9.1206519514589 8.40610693123835 8.670679517655 7.64671295416054 8.84763967052608 9.33738380373576 0.186484559409266 0.180578716711954 0.183917677500296 0.179863190306777 0.178983479346708 0.202416500392098 0.187872648673354 0.187243154256851 0.188729638655944 0.189202779307136 0.186168107125509 0.189302219826275 0.183561977853370 0.188846946710182 0.180516595486843 0.184493110598227 0.186678316716693 0.188423356538246 0.189934791334009 C C - 74251 74356 74306.818 74249 74380 - gene protein_coding_gene FALSE TRUE ATCG00700.1 PSII low MW protein Identical to Photosystem II reaction center protein N (PSII-N) (psbN) [Arabidopsis Thaliana] (GB:P62113;GB:P12172); similar to photosystem II subunit [Salicornia europaea] (GB:AAO66182.1); contains InterPro domain Photosystem II protein PsbN; (InterPro:IPR003398) -0.391860613239805 -1.45565528710741 0.173725684953387 1 0.363636379406866 17.275115442583 -0.391860613239805 0.423404878833744
AT4G34960_at 6.2363453905018 6.61712605272501 6.2040195935415 6.00877225078689 7.08018205462001 6.02298429306591 7.11294311907655 6.72074053931465 5.63269866496875 5.46920367160087 6.7509279459704 6.55386052615638 6.18649003996445 6.20741110878237 6.3485633940888 6.28329110236846 5.76981111435347 5.98603906645949 5.3397151668695 0.208694056821394 0.20433008014084 0.213047725196868 0.206617999043004 0.206409566833545 0.21419559368901 0.203450380377574 0.216595964254438 0.225727024750036 0.227495030302624 0.205129705671883 0.210326086881881 0.205695148857772 0.215738679727362 0.212225529427431 0.208586480409233 0.213326504337253 0.216626170223605 0.207836684130950 4 4|0 +|/ 16649476 16650556 16649950.444 16648610 16650902 + gene protein_coding_gene FALSE TRUE AT4G34960.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to CYP5 (cyclophilin 5), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G29960.1); similar to putative cyclophilin [Oryza sativa (japonica cultivar-group)] (GB:BAD53621.1); similar to Os09g0537600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063792.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.218730446027006 1.45561670388958 0.173736140564393 1 0.363589430171536 12.3710583892445 0.218730446027006 0.208716078793995
AT3G04200_at 2.73517573834690 2.42671896417143 2.33027942716953 3.02185993770553 2.23785928557479 2.55825896216998 2.08313637683078 2.75325231400613 3.14893982243847 3.07976208567506 2.75068682134799 2.38401610685584 2.48072385793041 2.80744093122306 2.63863176179945 2.41383736919311 2.50493887705733 2.8294738523886 2.88975728645008 0.222449843017754 0.208240261110466 0.220570858355741 0.216068442836965 0.209455962559772 0.212420640599164 0.207940046260635 0.213601299097103 0.229441825227264 0.215948075839504 0.211532171368804 0.211747075026285 0.208047919131976 0.213158124661777 0.21335626323294 0.207940046260635 0.207940046260635 0.210798112473311 0.212442051396774 3 3 - 1103762 1104458 1104070.455 1103623 1104608 - gene protein_coding_gene FALSE TRUE AT3G04200.1 germin-like protein, putative Identical to Germin-like protein subfamily 1 member 6 precursor [Arabidopsis Thaliana] (GB:Q9M8X6); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT3G05950.1); similar to putative germin E protein precursor [Gossypium raimondii] (GB:AAM76226.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -0.200387073073624 -1.45556567736815 0.173749968992673 1 0.363527340780178 5.33867017345306 -0.200387073073624 0.183563651399654
AT1G01230_at 9.03875878616152 9.22027702087716 9.04282079318344 9.05921195830336 9.63492179387575 9.06924216811313 9.1627371791229 9.1816814754707 8.8039563197468 8.46873533451735 9.01145039509764 9.05721719765193 8.68523124047923 9.06286410536762 8.70449080988712 8.7740911569524 8.27583336894728 8.98580486720937 8.4451606814228 0.158484196240114 0.149794379523897 0.173218499187167 0.153866034553142 0.152789766434701 0.164302792005992 0.158187237333144 0.151358659662146 0.158196029259353 0.161313477890122 0.154213505213074 0.149794379523897 0.163428626580431 0.149794379523897 0.156341964590474 0.154244609994075 0.175468125073284 0.159278641094362 0.161719334864141 1 1|0 +|/ 97701 98995 98462.778 97476 99240 + gene protein_coding_gene FALSE TRUE AT1G01230.1 ORMDL family protein similar to ORMDL family protein [Arabidopsis thaliana] (TAIR:AT5G42000.1); similar to Os02g0673600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047715.1); similar to unknown [Narcissus pseudonarcissus] (GB:AAL69388.1); similar to OSIGBa0103M18.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66850.1); contains InterPro domain ORMDL; (InterPro:IPR007203) 0.148845505215468 1.45545630816094 0.173779611726669 1 0.363394264381255 17.8723265658525 0.148845505215468 0.102901316117503
AT4G38070_at 1.2962614797606 1.30150452287189 1.11840819370677 1.36330620306290 1.38895451975834 1.27322068773766 1.31556315961062 1.37932165049812 1.80594236388397 1.65403509301154 1.53441008742438 1.29997536110959 1.21760960276380 1.37569977897493 1.61893517756894 1.70404935545622 1.67048080301965 2.08938452690937 1.87206119219437 0.193350395615879 0.190603794090373 0.194813142792550 0.192935814487235 0.19207387851306 0.194319242365433 0.192062194754412 0.195481618243353 0.194256205180743 0.193848991639684 0.194985603845548 0.194262333013213 0.194966492509008 0.189918306823260 0.195564813488159 0.198764497962300 0.197113028995661 0.197591438238478 0.200490369841189 4 4 + 17881923 17882412 17882171.909 17876529 17882563 + gene protein_coding_gene FALSE TRUE AT4G38070.1 bHLH family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65010.1); similar to putative centromere protein [Lycopersicon esculentum] (GB:AAK84477.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.125359215914412 -1.4554154743015 0.173790680181825 1 0.363344580910904 2.97514970363419 -0.125359215914412 0.0481645638103589
AT1G28460_at 1.37799900251912 0.950166390453799 1.50571763571206 1.44243220980318 1.76200183589723 1.42102784807737 1.60795034596772 1.18619827284404 1.09241042240850 1.34933983668654 1.18556834671588 1.32940269222083 1.48619283429451 1.70947208077474 1.2452157685281 1.34229122903472 1.43241917494761 1.03131228307364 1.39962225957621 0.252296048440123 0.252296048440123 0.260707803951418 0.262373637165549 0.262960815262179 0.254484803870004 0.25454204502086 0.254759532802857 0.272176549336622 0.260033296259639 0.257199063933658 0.262132144623915 0.2540480904096 0.26510869192455 0.257902020277236 0.252296048440123 0.272751360679667 0.264444357908677 0.252931527054947 1 1 + 10006276 10006699 10006398.75 10006216 10006764 + gene protein_coding_gene FALSE TRUE AT1G28460.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G28450.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE80236.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE79091.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.158496587200645 1.45516876359159 0.173857566553943 1 0.363044421636033 2.71953259637057 0.158496587200645 0.120043551095352
AT3G56510_at 7.05428372686961 6.94038688480788 7.53146343533332 7.17127372314803 7.90857120355295 7.53361719501176 7.63851272106336 7.11006469762524 6.25505000719662 6.41637511344082 6.39967570421537 6.36838792642573 6.53880464959063 6.52259927470293 6.49757074885233 6.38362080346316 6.6854915801975 6.46124473888636 6.84026692414356 0.207425603604978 0.206704861466798 0.212406035852466 0.206365048194419 0.224955647093786 0.210694708863091 0.235939131348698 0.212406017582185 0.217703960783042 0.210828954347846 0.217172897150644 0.209746835039984 0.215322032192901 0.218833117957354 0.21721909919656 0.204397440348272 0.217728621298860 0.224743923435927 0.21606312687696 3 3|0 -|/ 20955798 20956818 20956302.571 20954907 20957640 - gene protein_coding_gene FALSE TRUE AT3G56510.1|AT3G56510.2 TBP-binding protein, putative|TATA-binding protein binding similar to Os07g0662600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060544.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_500481.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) 0.164348230850706 1.45495880456665 0.173914506372709 1 0.362789002011055 13.8540575867026 0.164348230850706 0.129797567007543
AT3G10090_at 8.61127991390345 8.8533401113883 8.42069881689927 8.49832863499307 8.55569861032232 8.4539316752166 8.34655660663444 8.38142215917186 8.48943070004137 8.4212163868307 8.29822239764086 8.37153042014044 8.64888454426865 8.63125204394801 8.18852765054888 8.31367724993068 7.94156964018514 8.25964945213131 8.63749482789194 0.122567254892101 0.115644399179974 0.117819331678838 0.115433250979964 0.120664661982354 0.115743460156898 0.120032055343198 0.127361931303641 0.119247146775550 0.120369247164572 0.118417293308301 0.119247139422040 0.119523693164754 0.116814978771521 0.11404784375636 0.115707097606448 0.121450256974531 0.123057105352772 0.118984183801353 3 3 - 3108985 3109124 3109040.818 3108815 3110031 - gene protein_coding_gene FALSE TRUE AT3G10090.1 40S ribosomal protein S28 (RPS28A) Identical to 40S ribosomal protein S28-1 (RPS28B) [Arabidopsis Thaliana] (GB:Q9SR73); similar to 40S ribosomal protein S28 (RPS28B) [Arabidopsis thaliana] (TAIR:AT5G03850.1); similar to ribosomal protein S28 [Prunus persica] (GB:CAA10101.1); similar to ribosomal protein S28 [Prunus persica] (GB:CAA10104.1); contains InterPro domain Ribosomal protein S28e; (InterPro:IPR000289) -0.125184196744389 -1.45475534069395 0.173969699910592 1 0.362541506610047 16.9390128059515 -0.125184196744389 0.0477679913348975
AT3G59070_at 1.20928468342405 1.20785984032246 1.37074876639879 0.978418529492283 1.05993234371229 1.05113284911834 1.20096317042264 0.906635623789634 1.29394346284080 1.81693888864677 1.01543360537026 1.27512874844303 1.17807463924403 1.49046155650391 1.12553442576461 1.24559035569450 1.29686301957725 1.34987259769947 1.41988029119077 0.184781788405085 0.181640354618976 0.189959224142697 0.183440157839270 0.182440240490819 0.187302630112835 0.181110089442220 0.183242337630827 0.189353713881459 0.188374669075470 0.179215194209908 0.190405925469556 0.186313904810257 0.178182022239751 0.178542931134277 0.180814681560409 0.205334382941920 0.186556025463990 0.184907430099857 3 3|0 -|/ 21843406 21844620 21844157.5 21843341 21845491 - gene protein_coding_gene FALSE TRUE AT3G59070.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G48750.1); similar to hypothetical protein 26.t00022 [Brassica oleracea] (GB:ABD65002.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.139631026499122 -1.45455036394569 0.174025318948083 1 0.362292193562847 2.50180901721668 -0.139631026499122 0.0848905327432553
AT1G36320_at 10.0370786156253 10.1157052675161 10.3893179078227 10.3363441939915 10.4687919596785 10.3523365274864 10.4442245184557 10.2993298813652 9.80495714474798 10.1493973276969 10.0977642154416 9.93393423924162 10.0693981267354 9.92310564580343 10.2130048191396 10.3483652170482 10.1051271989111 9.9555598777929 10.0434746907386 0.0740880357400737 0.0705473607872408 0.0742458128134675 0.0732673809503027 0.0721627110003362 0.0738076649624264 0.0705739366226592 0.0715727823954721 0.0827247750311501 0.07750795986337 0.0712814735751423 0.0705473607872408 0.0712087146786184 0.0758065478080435 0.0732280872508781 0.0705473607872408 0.0760463169410428 0.0780088064222571 0.0742778396910684 1 0|1 /|+ 13674335 13675090 13674662.556 13673026 13675310 + gene protein_coding_gene FALSE TRUE AT1G36320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37920.1); similar to Os01g0306800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042846.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84185.1) 0.122059553145316 1.45417395901932 0.174127493333441 1 0.361834431731866 20.3454205116137 0.122059553145316 0.0361119467235267
AT2G22980_at 10.0072861778182 9.86467631728868 9.686724854964 9.56046097220546 10.5484286617292 10.2702588427239 9.92019698623272 9.58136994811831 10.1854893578258 10.6933589999820 10.3812961046763 9.90552646927163 10.3256096403163 10.2215852263495 9.7768911643758 10.3664961206674 10.0779758740325 9.80602788804122 10.7948093420034 0.0945112815159316 0.0931573663157352 0.0968003811612657 0.104650257994263 0.0932146299690479 0.091981807456305 0.0923497263045178 0.0935671485650883 0.106298792124953 0.0939440146868138 0.093218022020391 0.0918794063286157 0.0975845942589673 0.102382501212561 0.0960576896636572 0.0925033329590871 0.0943592080434513 0.0976069552435918 0.0927954104273686 2 2|0 +|/ 9788106 9790130 9789159.8 9785957 9790331 + gene protein_coding_gene FALSE TRUE AT2G22980.1|AT2G22980.2|AT2G22980.3|AT2G22980.4 SCPL13; serine carboxypeptidase|SCPL13 similar to SCPL7, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G10450.1); similar to SCPL11, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22970.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SNG1 (SINAPOYLGLUCOSE 1), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22990.3); similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.138561931714788 -1.45402124156204 0.174168962773534 1 0.361648727473605 20.2627063255867 -0.138561931714788 0.0827162102034457
AT4G32840_at 3.71463364207577 4.12058143253945 3.55488108495505 3.46119654342164 4.45778104672218 4.01087652195065 3.87325086141233 3.78167481775453 4.35249345122994 3.86731208719217 4.13914620792167 4.18170617887400 4.41468029225331 4.49182575118776 4.7678554760424 3.90457673296105 3.96217157211409 4.20857208865138 3.64738290618641 0.210386265034752 0.191916395194944 0.20951252019829 0.200860664087989 0.203436738173771 0.198489239553402 0.203233648066562 0.195186392126161 0.198098009683907 0.193005232700891 0.199696633385251 0.195092479161326 0.196115446276016 0.194132469205232 0.200703651811844 0.206773599985592 0.198488271977985 0.203759574782362 0.199433742711041 4 0|4 /|- 15845047 15845831 15845353.2 15844784 15848445 - gene protein_coding_gene FALSE TRUE AT4G32840.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G29220.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE84859.1); similar to Phosphofructokinase, putative [Medicago truncatula] (GB:ABE90419.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE80791.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.150867958390701 1.45387908101124 0.174207573120652 1 0.36147587174033 7.9791326283724 0.150867958390701 0.106913645806323
AT2G22340_at 2.4055734406526 1.88016470679296 2.06473483153638 1.97834482133719 1.53069901023025 2.32099933779753 2.09999602881036 2.23723334783607 2.33931794621464 2.15342675394599 1.76840491741311 1.90752766823655 2.26819717011169 2.35704733137814 1.88418969284531 2.07352078007241 2.55683690702093 2.03761346651546 2.41079326943567 0.194763154958970 0.194786026469270 0.198642116938085 0.186984939005713 0.195177689169503 0.195941856587262 0.202781090709338 0.186984939005713 0.187185879728257 0.192771113419009 0.194489653863624 0.189606385043386 0.190425497960545 0.204068839993775 0.193465225006714 0.189660178943673 0.187963094698976 0.192000469237900 0.20793330393725 2 2 - 9500082 9500493 9500347.143 9499959 9501035 - gene protein_coding_gene FALSE TRUE AT2G22340.1 unknown protein -0.188279731148613 -1.45387628767077 0.17420833185601 1 0.361472475373741 4.26864147307315 -0.188279731148613 0.166611855579099
AT4G01530_at 1.73137362438655 1.65194892754162 1.52398019825633 1.78440225876073 1.34825959516444 1.35135866747899 1.5569590346338 1.48823591425497 2.11767061496141 2.04076935376282 1.79024819044964 1.60724879845556 1.73776513206618 1.99144515020588 2.11217660577583 1.81980325062089 1.71465508566343 1.72773037678576 1.71619202442484 0.247908108991835 0.244927779029475 0.256820003200623 0.244028696144359 0.247887127826938 0.246817387261524 0.248616828796085 0.247450876906766 0.245448317443906 0.250211157013776 0.240149435201718 0.245014461856029 0.245910849736126 0.240149435201718 0.240149435201718 0.240727666059356 0.258752541613774 0.245011480009355 0.247028251379423 4 4|0 +|/ 664368 664998 664743 663408 665102 + gene protein_coding_gene FALSE TRUE AT4G01530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26860.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.125352892959616 -1.45383438302284 0.174219714457928 1 0.361421524860459 3.43998714662764 -0.125352892959616 0.0485973743633888
AT1G78980_at 0.728992198806852 0.277575852268432 0.0983948858055416 0.441873089225855 0.571068783525971 0.411757205657344 0.700027897765639 0.23411773206946 1.13253523326588 0.771936542018422 0.641774425964506 0.568748558489916 0.909252107218607 0.454573641258855 0.775692115020749 0.417170195842073 0.876854372890255 1.08201069352565 0.915478199168758 0.214031032991597 0.215864821442185 0.220616598457463 0.225959031048974 0.214595816534427 0.215715429366685 0.225369739968765 0.214414959501624 0.232764294836592 0.218412599722417 0.221113899115749 0.214031032991597 0.217844670094716 0.218681510710430 0.216464878774759 0.218652721842081 0.214800574442520 0.218999101329713 0.224877104060967 1 1 - 29712836 29713534 29713156.2 29712580 29716314 - gene protein_coding_gene FALSE TRUE AT1G78980.1 ATP binding / kinase/ protein serine/threonine kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G13065.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); similar to Os09g0559900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063921.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91085.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.164314370107639 -1.45362497329867 0.174276606134875 1 0.361166924551620 1.26084737493764 -0.164314370107639 0.129987722157822
AT1G22160_at 8.73503091901285 8.58888874774948 8.88346964585128 9.00673031792614 9.20117741685491 9.27010155262164 8.93348139692946 9.01380677746603 8.33848141347566 8.93980340397249 8.27957063504027 8.20020345898587 9.43835480646163 8.9907997439355 7.86569834515546 9.59390953613097 9.43414952819581 8.64847388365964 9.22452053354388 0.104273078173609 0.108948502467021 0.106880947306856 0.101342550010165 0.107675414620833 0.104140004483229 0.107365629459578 0.101462378563909 0.117084708534154 0.0997891674837932 0.104749545981217 0.106692952607812 0.102881269888708 0.102515637674715 0.111943684993629 0.105695658287568 0.102781445120516 0.107525953658379 0.103008979886128 1 1 + 7823247 7823733 7823456.182 7823138 7823960 + gene protein_coding_gene FALSE TRUE AT1G22160.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G78020.1); similar to 80C09_23 [Brassica rapa subsp. pekinensis] (GB:AAZ41834.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.122347157444503 1.45283093769167 0.174492470755370 1 0.360201751810900 17.7744175680646 0.122347157444503 0.0378168714291899
AT2G19600_at 4.53683832497951 4.67332046240936 4.45849159259035 4.53280741436014 4.20843769308883 4.23770831620528 4.91386631821992 4.70934464495111 4.99251635816674 4.72337844676039 4.80528457671741 5.70147663720168 5.00364659252031 4.76466053519919 5.23455785936733 5.34396129366056 4.81552610524217 4.66906891986676 5.10875387980183 0.213721085775540 0.20258765397521 0.218125252856836 0.206113713961639 0.201762485624729 0.222077102238057 0.213602774970865 0.206822448637457 0.214612470222960 0.207775260539462 0.207160854372137 0.207141063507464 0.202362126721544 0.205893585778785 0.203144294624994 0.201762485624729 0.214824864949175 0.202272208581245 0.206140121488274 2 2|0 +|/ 8489396 8490533 8489910.25 8486280 8490912 + gene protein_coding_gene FALSE TRUE AT2G19600.1 ATKEA4 (Arabidopsis thaliana K+ efflux antiporter 4); potassium:hydrogen antiporter member of Putative potassium proton antiporter family similar to KEA6 (K+ efflux antiporter 6), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G11800.1); similar to KEA5 (K+ efflux antiporter 5), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G51710.1); similar to Os06g0561200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057872.1); similar to Putative potassium/proton antiporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19118.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.124128965091611 -1.45263043163136 0.174547015879465 1 0.359958085006786 9.52576303412468 -0.124128965091611 0.0447392661502908
AT3G19140_at 0.0773213026816833 -0.0625207505821211 0.269074297411304 0.0825862349926183 0.037529585168134 0.194073202889929 -0.167384786687705 0.0471531068634686 0.158570780283746 0.096658882308869 -0.189165721672616 -0.404069583663655 -0.518602109282066 0.180597406573991 -0.284200765350756 0.127759860848934 -0.385610401877449 -0.429415027424955 0.324425625135381 0.196384825048106 0.195027204730602 0.197908835013123 0.197897659331091 0.197344398773656 0.194616130328063 0.194616130328063 0.196153627533270 0.194616130328063 0.198546465838348 0.204156740147407 0.201001709510260 0.201228769607236 0.204009084010904 0.203191565076336 0.204542225843683 0.204555588810046 0.198158156748919 0.194616130328063 3 3 - 6614933 6615315 6615152.182 6614916 6615341 - gene protein_coding_gene FALSE TRUE AT3G19140.1 protein binding / zinc ion binding Identical to Putative RING-H2 finger protein ATL3H (ATL3H) [Arabidopsis Thaliana] (GB:Q9LJL6); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G14320.1); similar to Avr9/Cf-9 rapidly elicited protein 132 [Nicotiana tabacum] (GB:AAG43550.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.129441554963536 -1.45258875643498 0.174558354910666 1 0.359907441580425 0.0374190923479607 -0.129441554963536 0.0611512619751288
ATCG00150_at 7.73193255809934 8.59434562488395 8.53546016726313 8.49433196141947 8.03607768358631 6.88735799792511 8.41613843370504 8.586632540689 10.0608340115229 10.1609118258788 10.3879359519137 10.8857959641052 9.81951957444463 9.91273873878443 9.26901272997176 10.2179800054228 8.98695061236246 10.0331321348973 10.0635806863018 0.210368101889401 0.205877820319313 0.203209799544089 0.206828337561481 0.201531198508852 0.223883379348671 0.201802125024530 0.196222737046297 0.212774678564456 0.205210005404132 0.205781227911402 0.216257117065010 0.20844653862786 0.215045328272561 0.203586243884708 0.200007121856635 0.212524438486636 0.201160989339715 0.197358002871471 C C - 14228 14522 14378.727 14021 14770 - gene protein_coding_gene FALSE TRUE ATCG00150.1 Encodes a subunit of ATPase complex CF0, which is a proton channel that supplies the proton motive force to drive ATP synthesis by CF1 portion of the complex. Identical to Chloroplast ATP synthase a chain precursor (EC 3.6.3.14) (ATPase subunit IV) (atpI) [Arabidopsis Thaliana] (GB:P56758); similar to ATPase subunit 6, putative [Arabidopsis thaliana] (TAIR:AT2G07741.1); similar to ATP synthase CF0 subunit IV [Vitis vinifera] (GB:YP_567064.1); contains InterPro domain ATPase, F0 complex, subunit A; (InterPro:IPR000568) -0.249965482021268 -1.45240420838103 0.174608574484679 1 0.359683191297957 18.1774056485576 -0.249965482021268 0.250425883672828
AT3G55060_at 2.87891355055588 2.81956933972855 2.63161923983775 2.71743499024254 2.59658238868783 2.4484190783572 2.24153495074576 2.69834613353795 2.59628760668982 2.78773400106947 3.01120432772827 2.97621817591536 3.0120564556937 2.84133718190361 3.07245706823365 2.98875667849707 3.04311252031676 3.1526133813849 2.63247858151394 0.167125901810857 0.167196076286270 0.166423451556574 0.164414851582677 0.170102842843446 0.164501192868835 0.165056709808756 0.164485450847480 0.161135180462859 0.17026405039415 0.164288275907229 0.163230101274846 0.165039973722060 0.165494910136026 0.166407660400626 0.168385632201189 0.173843023449147 0.169615825368818 0.166520644116178 3 3|0 -|/ 20414379 20414951 20414686.7 20414166 20417199 - gene protein_coding_gene FALSE TRUE AT3G55060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39300.1); similar to Moesin; Prefoldin [Medicago truncatula] (GB:ABE91351.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.13948783729536 1.45229232041755 0.174639027649348 1 0.359547241614667 5.47124556069514 0.13948783729536 0.0850462706279646
AT3G46680_at 2.34658766246868 2.19486502549058 2.03802188064542 2.09173476725675 1.69026568525312 2.17351196864168 1.92821182886291 1.93030074610165 2.36401291355915 2.65373174238333 2.38146170546346 2.0004370707651 2.08755603423267 2.04856149877074 2.50065918961688 2.03778921708641 2.54203886331809 2.38431559578917 2.26679229192287 0.193305924979496 0.199310483100216 0.191413558048192 0.196673284693239 0.194306920698862 0.191220251389159 0.196042703819622 0.194070352856639 0.19919946607113 0.200376101853179 0.190817294149406 0.193809282355436 0.197211801278938 0.193057653821311 0.191122129395117 0.199002773946744 0.208760388028473 0.192248019188788 0.198305551325378 3 3 - 17206303 17206838 17206615.545 17206303 17207728 - gene protein_coding_gene FALSE TRUE AT3G46680.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46650.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46720.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46690.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.140967163011591 -1.45224678691604 0.174651422049591 1 0.359491917988558 4.38720313534115 -0.140967163011591 0.0881451796864843
AT2G20960_at 9.10041446715791 9.30174215509125 9.21359089576898 9.42006238519103 9.5921905062625 9.4487651152577 8.86632772780836 8.96801500553107 9.18764867578772 8.88829520716256 8.98997693601388 8.9111002420241 9.02228220263601 8.93972086989309 8.84551015752318 8.96075013171149 8.88939843527824 8.95453414367317 9.04948791085042 0.114578203836583 0.107698120735900 0.112503127861356 0.107917545906911 0.111549264557749 0.120021933026550 0.110875684334021 0.109259098888493 0.112520243364435 0.112854276264765 0.111794153202907 0.113752996464283 0.115879141365047 0.112693236153450 0.113109411211093 0.112531790475517 0.116214981960783 0.110877607954921 0.113083535674277 2 2 + 9016101 9016638 9016290.727 9013729 9016844 + gene protein_coding_gene FALSE TRUE AT2G20960.1 pEARLI4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38560.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.128437964316741 1.45223119933830 0.174655665222495 1 0.359472979195315 18.2293734011475 0.128437964316741 0.0584490581204674
AT1G35530_at 0.847713708835492 0.71023385965743 1.06545520055375 1.47525314503262 0.755058145838368 0.945407615643125 1.12416779096279 1.20427103761863 1.11937510804975 0.886161138517173 1.18161464153916 1.44292804097199 1.18888187413079 1.01929172215897 1.04764284474368 1.14030180484339 1.18693255281670 1.24256766521096 0.973520758806668 0.224627797448354 0.230743622076166 0.234600899046313 0.230774420323213 0.227509061926834 0.224916910105671 0.225321132178302 0.236062510651057 0.224627797448354 0.235295337392469 0.228956565373217 0.226155648554585 0.230693592409533 0.229627451609637 0.233447374538946 0.229601260261671 0.241414493428202 0.227322983634345 0.236995243239475 1 1 + 13096477 13097024 13096675.818 13089972 13097056 + gene protein_coding_gene FALSE TRUE AT1G35530.1 DEAD/DEAH box helicase, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36020.1); similar to Os11g0180600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065894.1); similar to Similar to probable ATP-dependent RNA helicase - fission yeast (Schizosaccharomyces pombe) [Oryza sativa (japonica cultivar-group)] (GB:AAX96303.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.138474034504570 1.45219940368032 0.174664320750783 1 0.359434348110952 2.10308963556435 0.138474034504570 0.0829010442140302
AT3G48580_at 0.996950998901795 0.997355295274038 1.14492508158791 1.34096231053693 1.30702741018212 1.34892485698199 1.24100513247270 0.761849484442465 0.971325575994779 1.23390469715712 1.30902372620933 1.11198442642696 1.04871858857861 1.00605217142778 0.97872715767456 0.94854579499009 1.17707890554904 1.28193127212233 1.12575934621311 0.186635852932303 0.191450655814375 0.192225207499916 0.186635852932303 0.193034826816669 0.187008167168536 0.193241983099277 0.187534700781359 0.188574520789182 0.188351820673119 0.18899010676092 0.189936558982189 0.193645651312275 0.195767725627576 0.186635852932303 0.186635852932303 0.188750987069228 0.194566011218822 0.186635852932303 3 3|0 +|/ 18018558 18019280 18018905.889 18018166 18019472 + gene protein_coding_gene FALSE TRUE AT3G48580.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 11 precursor (EC 2.4.1.207) (At-XTH11) (XTH-11) (XTH11) [Arabidopsis Thaliana] (GB:Q9SMP1); similar to XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT3G25050.1); similar to xyloglucan endotransglycosylase [Pisum sativum] (GB:BAB17788.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.141798784650076 1.45206887065757 0.174699858750323 1 0.359275758856703 2.25141888554450 0.141798784650076 0.0898845806681824
AT1G21550_at 4.55994296818525 5.63712706557527 5.96046209882177 6.58731719625619 5.68711487968714 4.74177587818146 6.85476642910547 6.94956862524208 2.02750743932095 2.60019403461355 1.71405339210806 1.92786201756427 2.13305380603184 1.97411373686107 1.54477695895394 1.89020608069297 2.26534838075702 1.85185799716692 1.93848480384834 0.361285625114081 0.377677308305831 0.371428329261674 0.362426578350982 0.375500891978054 0.365429737661796 0.369973002557169 0.381244908387971 0.360349863303582 0.362194136698287 0.368814215924968 0.35611910216392 0.357319708412747 0.358186103128327 0.365246118010215 0.359390965732717 0.365412308401417 0.360546408098397 0.358265025990998 1 1 - 7553431 7553738 7553609.727 7553090 7553865 - gene protein_coding_gene FALSE TRUE AT1G21550.1 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT4G20780.1); similar to calcium-binding protein [Lotus japonicus] (GB:CAB63264.3); similar to Os02g0606500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047379.1); similar to EF hand family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96836.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.266126735892156 -1.45176069185614 0.174783785783225 1 0.358901378004118 7.9229532953958 -0.266126735892156 0.271200797359755
AT3G25655_at 1.69456235883885 2.09542864396915 1.86175145092595 2.23030182907144 1.30658390108632 1.53985680047862 1.59531888153053 1.81892051408325 2.07696270542918 1.62615930820880 1.57072114719165 1.26215994721811 1.48211714840175 1.68211315883123 1.36059392697138 1.38144277207172 1.71400602562323 1.85169471243234 1.62406034104307 0.207542318588930 0.208866487176757 0.216299968773321 0.212598356572888 0.206586122498835 0.214282771949305 0.204954894541882 0.211360920653313 0.206261669805995 0.206779877598934 0.206674115948187 0.207285169936069 0.210179347274166 0.218628050082553 0.213117389355871 0.205281406029083 0.206590919058611 0.204954894541882 0.207748998698215 3 3 - 9338974 9339167 9339080.636 9338769 9339302 - gene protein_coding_gene FALSE TRUE AT3G25655.1 unknown protein -0.152027725466267 -1.45084302047314 0.175033900805741 1 0.357786880120388 3.42475732569952 -0.152027725466267 0.109577510116383
AT3G48610_at 4.79869170781017 5.11103190507416 3.73797278934605 3.89632897020425 3.75582024349644 3.77622495703122 6.41819399154372 6.62625605244526 4.32680734649683 5.61021937289194 6.58616273868019 7.63433988855411 7.08108936375646 6.6786774881257 7.4214379771899 7.11483114384325 6.43053553193357 6.54132701442752 5.82793179936555 0.222557605840954 0.223830614327283 0.219941587314025 0.218163457258627 0.218382555416927 0.216361425096648 0.22350551288801 0.231415788377811 0.256473786246132 0.217582492271710 0.216051856065063 0.218973037654294 0.217844879124283 0.228832897881593 0.225438033888673 0.218893470145551 0.244494621318237 0.221095018074253 0.221185202635125 3 3 - 18022652 18023700 18022936.545 18022530 18025067 - gene protein_coding_gene FALSE TRUE AT3G48610.1 phosphoesterase family protein similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G07230.1); similar to putative phospholipase [Oryza sativa] (GB:AAK82449.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) -0.132946351901552 -1.45079297453912 0.175047549790017 1 0.35772611323032 10.8605832352349 -0.132946351901552 0.0705798417977168
AT3G19420_at 9.98003392785485 9.92076264519287 10.1082310485059 9.99993084146614 10.2949651536223 10.3200819839069 9.88960641714328 9.76876929828615 9.8299912392964 9.82110300200282 9.8614825509787 9.67357516391474 9.77022811658527 9.84328600657549 9.62257444827293 9.81530871781573 9.77232430310861 9.86008426740426 9.83092962462601 0.076116730677404 0.0776531721318539 0.0739615278380406 0.0765486184276028 0.0746305778270184 0.0773592093540452 0.0746901552426692 0.0746315115967005 0.0766404123596188 0.0768205589934246 0.0736113232667824 0.0743880386877267 0.0755568100653996 0.0774369926290655 0.0768335494043524 0.076317021323744 0.074010393739548 0.0735604388136514 0.0756706578473643 3 0|3 /|+ 6734850 6735310 6735089.7 6731382 6735629 + gene protein_coding_gene FALSE TRUE AT3G19420.1 phosphoric monoester hydrolase similar to phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G50110.1); similar to GA19047-PA [Drosophila pseudoobscura] (GB:EAL29329.1); similar to Os12g0407500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066634.1); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.120512921473133 1.45063770581244 0.175089901866099 1 0.357537591124309 19.8376472822342 0.120512921473133 0.0302100532073928
AT4G24175_at 2.86987932841132 2.76027446653594 2.38304905267418 2.33711872409738 2.41457353763766 2.58684997911227 2.25867713497811 2.85513183014838 2.83556709823398 2.39136030348983 2.87448913814415 2.80964804770201 2.31793296578590 2.44626493356816 3.16244148464193 2.37020581279792 2.61741047784733 2.46907626664985 2.81790154158820 0.179664409914749 0.177655258647758 0.183620936326398 0.1859530668246 0.185982581071607 0.182123682270698 0.184089929165002 0.185745399466336 0.177655258647758 0.179660795443581 0.183529770953648 0.177655258647758 0.182256581902897 0.185983207209340 0.184536442740866 0.183615641510903 0.200671459831151 0.184248568676287 0.185007905348574 4 4|0 +|/ 12547349 12548795 12548141.4 12546979 12548970 + gene protein_coding_gene FALSE TRUE AT4G24175.1 similar to OSJNBa0024J22.22 [Oryza sativa (japonica cultivar-group)] (GB:CAD37109.2); similar to Os04g0250700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052315.1); contains domain KINESIN HEAVY CHAIN (PTHR16012); contains domain KINESIN MOTOR PROTEIN 1-RELATED (PTHR16012:SF56) -0.151884436758288 -1.45047714541376 0.175133706512247 1 0.357342657803525 5.21571590103081 -0.151884436758288 0.109389192648679
AT4G01330_at 6.80867674019563 6.91069084239159 5.9504576963395 5.9818668965827 7.36438618919678 6.58790815125625 7.51991846793624 7.34007577522411 7.81244697013935 7.4816498496295 8.55257021343627 8.5019934606238 8.47405882910394 8.50899722805301 7.89976739952663 8.25006529172873 7.28846028239148 7.61076437352532 8.1102177390268 0.198282776871691 0.212385522540758 0.205431675486921 0.215997748838350 0.20196546086791 0.198282776871691 0.206442696798449 0.207281586150902 0.212214688489601 0.198282776871691 0.198282776871691 0.202551283707205 0.203513287937407 0.202479620979269 0.204063687025248 0.201528295310076 0.209065057985687 0.207037947091252 0.201513796557163 4 4|0 +|/ 551837 552633 552266.3 550420 552941 + gene protein_coding_gene FALSE TRUE AT4G01330.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01540.2); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048818.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.169644637279824 -1.45015551314429 0.175221483427913 1 0.356952212274554 14.7766340054223 -0.169644637279824 0.139161663641757
AT3G50890_at 1.64635553198528 1.38635037113982 1.72216715670725 1.62880268684199 1.11271938595132 1.50105137678744 1.51394671856258 1.61846805674019 2.0629242550665 1.53716016707776 1.38266354912697 1.75849525300740 1.65284234359442 1.63929437801507 1.93124889562472 1.50998415572966 1.50338744363372 1.31377999429255 1.84272714157935 0.223601349822658 0.225213177085481 0.230053965105598 0.233078804813595 0.227940232978840 0.226169550959906 0.223601349822658 0.231944444491148 0.229665353536907 0.234028334813032 0.233603504224476 0.231676661890312 0.231593568752614 0.223858510065091 0.228100805853785 0.225543049338445 0.228347932523773 0.229778309182564 0.229448815233690 3 3 + 18927551 18927838 18927686.273 18927147 18928309 + gene protein_coding_gene FALSE TRUE AT3G50890.1 ATHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28); DNA binding / transcription factor similar to ATHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G18350.1); similar to ZF-HD homeobox protein [Flaveria bidentis] (GB:CAC34447.1); similar to zinc finger homeodomain protein 1 [Physcomitrella patens] (GB:AAZ07989.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.138951768824053 -1.44971482293208 0.175341813386306 1 0.356417327522237 3.21659892202412 -0.138951768824053 0.0844333071855286
AT1G73000_at 1.51976053991475 1.39137463531004 1.04497150803474 0.781681535382302 1.42053080415556 1.65029736034346 1.77688672796764 1.26978395615430 1.15615254988601 1.70304421982894 1.76459572319012 1.61906178858260 1.61168781263080 2.00710275832393 1.47257083946952 1.14066135013502 1.80167328194472 1.39130280889236 2.05766689028608 0.212651785470843 0.210128794973694 0.210662825690493 0.214958228025468 0.210402368907864 0.215813384189805 0.212021969968901 0.212502652063780 0.218791650043095 0.217378573292586 0.218388907599536 0.215382993675108 0.217682231891103 0.213757503256015 0.218560119931968 0.214429027918991 0.213674695378906 0.239805418266334 0.212236401200920 1 1 + 27466797 27467338 27467008.455 27466656 27467538 + gene protein_coding_gene FALSE TRUE AT1G73000.1 similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT2G26040.1); similar to Bet v I allergen-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25659.1); contains domain Bet v1-like (SSF55961); contains domain no description (G3D.3.30.530.20) -0.151476835397605 -1.44935924584825 0.175438954599255 1 0.355985825121889 2.97692918277276 -0.151476835397605 0.108866437663489
AT4G32440_at 5.29312234013717 5.61885790834579 5.61297081616213 5.63234086047504 5.80668580608905 6.09429600623098 5.20457626572035 5.03965094195545 5.33223795712354 4.75548655425326 5.24181566189594 4.67132989597111 4.9543893662469 5.38851177722972 4.35856479020458 5.27067771797043 4.78439734181776 4.60605515778681 5.31066065452097 0.260230120187590 0.246894951437180 0.242445525877734 0.243761535205551 0.243201158285657 0.264380826206219 0.244011067806087 0.265256133981101 0.260898728662137 0.241295365202367 0.251296527835032 0.241295365202367 0.241295365202367 0.247694199275161 0.245762397194455 0.248978467124731 0.264340436151869 0.243987508231682 0.245043306027464 4 4 + 15658176 15658674 15658449.182 15656691 15660229 + gene protein_coding_gene FALSE TRUE AT4G32440.1|AT4G32440.2 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25590.1); similar to Agenet [Medicago truncatula] (GB:ABE92607.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain ENT; (InterPro:IPR005491) 0.137097083270379 1.44928616939246 0.175458924260845 1 0.355897153374665 10.5589440026093 0.137097083270379 0.0805027619796843
AT4G37040_at 9.07334958106746 9.03467500984237 8.92982145657782 8.89364323538593 9.2497408598385 8.66382587787134 9.63416698517875 9.44177393929779 9.57443163916753 9.53660528279268 9.51495745079027 9.71272215116629 9.36829253258782 9.57988536410667 9.93608415187827 9.8169511185314 9.22641108737422 9.41503822410135 9.4204046812969 0.123518264540506 0.123492917244886 0.125286153613662 0.121407306469583 0.115783022671982 0.129304398428292 0.121910322327029 0.115783022671982 0.130276607029516 0.115783022671982 0.122594274321284 0.120068144173538 0.121037795656883 0.121789386159051 0.120724951630184 0.120511153261286 0.122232428060753 0.132331794768379 0.120623408077044 4 4|0 +|/ 17456017 17457024 17456588.5 17455133 17457351 + gene protein_coding_gene FALSE TRUE AT4G37040.1 MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase encodes a methionine aminopeptidase Identical to Methionine aminopeptidase 1D, chloroplast/mitochondrial precursor (EC 3.4.11.18) (MetAP 1D) (MAP 1D) (Peptidase M 1D) (MAP1D) [Arabidopsis Thaliana] (GB:Q9FV50;GB:Q9SW64); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to Putative Xaa-Pro aminopeptidase (ISS) [Ostreococcus tauri] (GB:CAL55082.1); similar to Os02g0761700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048199.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) -0.150460647890095 -1.44889086447067 0.175566983114859 1 0.355417536479721 18.6560112653755 -0.150460647890095 0.107114551439678
AT4G24540_at 3.18453098616705 3.08311744552085 2.85601126704053 2.94999460320184 3.02179543367029 2.95987611131004 3.26872648932973 3.33537327849624 2.93152087105888 3.97324953868173 3.40428591180117 4.43553245350188 3.54686364683966 4.06463510571836 3.80024611469559 3.65777860420579 3.6087493920333 3.70867119221832 4.33760129256913 0.236817830960481 0.239551981904377 0.251871359163996 0.246780270133920 0.239439902055129 0.238450812204563 0.241860692485002 0.243830156229634 0.253008702874654 0.243047983206243 0.237201640763951 0.23281039504175 0.236227356212787 0.234296305106036 0.233479444883961 0.229272616341991 0.241245052938838 0.230307569983527 0.237501511514559 4 4|0 -|/ 12671291 12673532 12672209.3 12670980 12674082 - gene protein_coding_gene FALSE TRUE AT4G24540.1 AGL24 (AGAMOUS-LIKE 24); transcription factor A MADS-box gene. Binds with IMK3 kinase domain. Phosphorylated by IMK3; likely to be a target for IMK3 kinase domain. similar to SVP (SHORT VEGETATIVE PHASE), transcription factor [Arabidopsis thaliana] (TAIR:AT2G22540.1); similar to MADS box transcription factor [Populus tomentosa] (GB:AAR92206.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.120064813774638 -1.44880847603857 0.175589511597462 1 0.355317586655851 6.84532947020707 -0.120064813774638 0.0286421783851759
AT1G80180_at 10.7270787605162 10.8162041757144 11.1333513558485 11.2449523965593 11.5938000637774 11.3338569588109 10.592209037404 10.5917808004135 11.1653487930826 10.8970393040393 10.5258350869913 10.0445387604455 10.8115963246899 10.6359412567640 10.1831519946033 11.0045822254648 11.0286511039385 10.6673525473634 10.9552060349633 0.0780233463560541 0.0766192287781608 0.0805914018822645 0.078954670716503 0.0791910306400415 0.0818451403107949 0.0799878680432208 0.0767155039756203 0.0844583785094005 0.0806452179333372 0.0766192287781608 0.0786956787583608 0.0796074950924682 0.0806407507681634 0.0802963282322747 0.0766192287781608 0.0778284718030246 0.0808045278463816 0.0818974093371937 1 1 - 30161950 30162341 30162166.273 30161718 30162476 - gene protein_coding_gene FALSE TRUE AT1G80180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15400.3); similar to Os06g0601100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058003.1); similar to Os01g0174100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042161.1) 0.125756726037280 1.44878005229644 0.175597284422062 1 0.355283105146292 21.8134396302444 0.125756726037280 0.0513271885944054
AT2G18030_at 4.7022154064518 5.05179727275653 4.35753354222305 4.77591541519275 4.79996496839735 4.60486602669463 4.69763864804991 5.60761086973453 5.62637102760931 5.00017711078892 5.53178272604192 5.33775652813753 5.15625668851393 5.69969137853845 4.92290357945599 5.04695527134845 4.55374699611384 5.33616027360383 5.03700066666972 0.220668771897743 0.221722771755568 0.226840565959555 0.212535559384492 0.221423082631215 0.217687298963785 0.223219782672266 0.225393103718235 0.223758944992589 0.212535559384492 0.217408434565703 0.224713937467051 0.216175681794767 0.221178944505092 0.231225870094882 0.214211674636653 0.227980756619233 0.223360238058514 0.212845252699031 2 2|0 +|/ 7847454 7848549 7848002.2 7847149 7848744 + gene protein_coding_gene FALSE TRUE AT2G18030.1|AT2G18030.2 peptide methionine sulfoxide reductase family protein similar to PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1), protein-methionine-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT5G61640.1); similar to Methionine sulfoxide reductase A [Medicago truncatula] (GB:ABE81080.1); contains InterPro domain Methionine sulfoxide reductase A; (InterPro:IPR002569) -0.201635907962328 -1.44864329879789 0.175634685457315 1 0.355117212401487 10.0343625763085 -0.201635907962328 0.186655633599865
AT2G41620_at 6.06079711793373 6.3913384508027 5.91553944538105 6.40769868744743 6.70713037650779 6.55956508896197 6.40861425919406 6.35330817174742 5.83445798828065 6.30574959698162 5.61069276108168 5.88548417847832 5.71670502220371 5.72991980905508 5.4238123970897 5.56827023316777 6.1032530265965 5.84140211837178 6.24596933289073 0.208053642148478 0.188707197105484 0.208558358200026 0.207532370565654 0.200305762910589 0.191307218342929 0.189262007502794 0.193426424028229 0.211201832592532 0.191587748049389 0.201097860287035 0.188645055330164 0.195743329078889 0.194956741187655 0.208501614848553 0.186706977322099 0.200950869469242 0.192207603260504 0.193141138182232 2 2|0 -|/ 17357674 17358327 17357958.1 17357223 17362162 - gene protein_coding_gene FALSE TRUE AT2G41620.1 nucleoporin interacting component family protein Identical to Uncharacterized protein At2g41620 [Arabidopsis Thaliana] (GB:O22224;GB:Q94CF2); similar to nucleoporin interacting component-related [Arabidopsis thaliana] (TAIR:AT3G57350.1); similar to Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] (GB:ABD28395.1); similar to Os03g0349000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050106.1); contains InterPro domain Nucleoporin interacting component; (InterPro:IPR007231) -0.149907148236840 -1.44860027880382 0.175646452498926 1 0.355065027868286 12.2823329910670 -0.149907148236840 0.106159208161584
AT2G42380_at 0.418189830590344 0.211490737901403 0.280557694556446 0.271618610679847 -0.00081901199249465 0.418718912628646 1.12170816561149 0.213557900833298 1.62404012674111 0.886820624186817 2.79378009301809 2.38852727183831 2.06469649829547 2.37223840818435 2.41822029700959 1.80486009949924 0.608151477637598 1.68771546942759 1.62703540362818 0.249962463753924 0.245612972567496 0.254488439582513 0.245612972567496 0.264602581395311 0.245612972567496 0.257176917552185 0.245612972567496 0.267193434228329 0.250484530126609 0.271245052742089 0.257818453160120 0.254064464257541 0.256100616318346 0.261490787049435 0.245612972567496 0.256619756474645 0.249429375242446 0.254938234634716 2 2|0 -|/ 17654296 17655373 17654814.7 17653978 17656023 - gene protein_coding_gene FALSE TRUE AT2G42380.1|AT2G42380.2 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G58120.1); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.194628688206195 1.44847727068102 0.17568010199305 1 0.35491582090474 2.06516406512570 0.194628688206195 0.176783059519771
AT1G09960_at 1.95824800945956 1.83517540208845 2.13025872288512 2.10298098961761 1.93505466122448 2.16505261249456 2.29109173415099 2.07774250894001 1.54719675620124 2.03228501175839 1.93044074511935 1.9830420916584 2.49605409183868 2.30478910279451 2.33453057941945 1.98610472264409 2.43912828144544 2.23836821579617 2.42232492235227 0.224838460023942 0.222954293084142 0.223039466964178 0.227559083305293 0.215581212266336 0.222229584633096 0.219238807601690 0.223664351104404 0.215581212266336 0.223603814239423 0.222735267840954 0.227934375097986 0.218576092594881 0.216000359449792 0.218890497454909 0.221296199246639 0.220139003240177 0.221878436589463 0.221392534830328 1 1|0 +|/ 3245774 3246673 3246239.667 3244215 3247202 + gene protein_coding_gene FALSE TRUE AT1G09960.1 SUT4 (SUCROSE TRANSPORTER 4); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter low affinity (10mM) sucrose transporter in sieve elements (phloem) Identical to Sucrose transport protein SUC4 (Sucrose permease 4) (Sucrose-proton symporter 4) (Sucrose transporter 4) (SUC4) [Arabidopsis Thaliana] (GB:Q9FE59;GB:O04516;GB:Q9M3R4); similar to SUC2 (SUCROSE-PROTON SYMPORTER 2), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G22710.1); similar to putative sucrose-H+ symporter [Datisca glomerata] (GB:CAG70682.1); similar to sucrose transporter 5 [Hevea brasiliensis] (GB:ABK60189.1); similar to sucrose transporter 4 protein [Lotus japonicus] (GB:CAD61275.1); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) 0.128113665815618 1.44832649668133 0.175721354470200 1 0.354732945578769 4.16928030957934 0.128113665815618 0.0585088300270329
AT3G59090_at 7.42832859083148 7.67290651534298 7.39202841419402 7.41860567345075 7.79386016568806 7.35547303876139 6.92968265987933 7.15512597070265 7.31743916498059 6.8281147947006 7.27969770307392 7.27570222108927 7.25651205157136 7.36720884737151 6.67277670142133 7.28889002534565 7.27197905787552 7.47864708346478 7.27945704438015 0.158714645344856 0.147832136076104 0.148866038219869 0.148393997961663 0.150718569709784 0.144597985131600 0.148301741747008 0.152879756787364 0.144870843270928 0.149598275468023 0.149370881113213 0.144473545881519 0.148004359961683 0.154519518765201 0.151256682615416 0.148276954874773 0.151689272299072 0.158375051117334 0.147896469595156 3 3|0 +|/ 21851865 21852868 21852534.5 21850175 21853732 + gene protein_coding_gene FALSE TRUE AT3G59090.1|AT3G59090.2|AT3G59090.3 similar to TOM1 (TOBAMOVIRUS MULTIPLICATION 1) [Arabidopsis thaliana] (TAIR:AT4G21790.1); similar to Os01g0751300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044258.1); contains domain Family A G protein-coupled receptor-like (SSF81321)|similar to TOM1 (TOBAMOVIRUS MULTIPLICATION 1) [Arabidopsis thaliana] (TAIR:AT4G21790.1); similar to Os01g0751300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044258.1) 0.144118632774496 1.44788208104475 0.175842996668932 1 0.35419398121855 14.5822999016507 0.144118632774496 0.0953423890315368
AT4G36260_at 2.11786604182898 2.52649620898539 2.00979993403784 2.46956175590429 2.28587038301425 2.4067228684112 1.91104268996769 2.12859607898502 2.1728982386413 2.27292819268286 2.58337063288738 2.23549420579441 2.40693963361906 2.06971488024272 2.54028141556763 2.22049191566279 2.67936143071866 2.83863929023167 2.33259828937185 0.219160191052966 0.218626865680316 0.214456038478639 0.22150940656495 0.225351714268119 0.222156607253439 0.223287937264689 0.217198692514511 0.221102381330147 0.216454142229633 0.220570697937019 0.219341833609778 0.231380639828442 0.216103230313555 0.219309640181118 0.214456038478639 0.220883620775604 0.214456038478639 0.225147972006958 4 4|0 -|/ 17155728 17156591 17156067.2 17155559 17157248 - gene protein_coding_gene FALSE TRUE AT4G36260.1 STY2 (STYLISH 2) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves. similar to SRS4 (SHI-RELATED SEQUENCE 4) [Arabidopsis thaliana] (TAIR:AT2G18120.1); similar to hypothetical protein [Thellun (GB:ABB45842.1); contains InterPro domain Zinc finger, LRP1-type; (InterPro:IPR006510); contains InterPro domain LRP1, C-terminal; (InterPro:IPR006511); contains InterPro domain Protein of unknown function DUF702; (InterPro:IPR007818) 0.154650124545999 1.44758379583483 0.175924681315185 1 0.353832296544487 4.58512528638644 0.154650124545999 0.114829867205581
AT2G35290_at 2.30010598367180 1.92796062237093 1.64728328923163 2.07958881176061 2.23737806908803 2.40532922495477 1.65182752950458 1.63941061970653 1.18515295394886 1.95554293000120 1.99606880879754 1.76846668027314 1.26340122093948 1.74002022936011 1.56637803127512 1.86052261385866 1.71090130400677 2.08986341954404 1.85713147282104 0.222963547999559 0.225205838290418 0.220703783271284 0.222822173570891 0.219297990382002 0.225735279897658 0.221900104892702 0.227722867740766 0.229630032774489 0.217944623754775 0.221300038846480 0.220049656214764 0.223923415600132 0.227487725605277 0.224476128239855 0.217693302539800 0.231707091005413 0.229583139176562 0.226216838478382 2 2 - 14868732 14868917 14868820.455 14868491 14869108 - gene protein_coding_gene FALSE TRUE AT2G35290.1 similar to Os03g0170100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049105.1) 0.148039498097562 1.44744379370214 0.175963031680473 1 0.353662554144941 3.69380813916805 0.148039498097562 0.102926362472464
AT2G32410_at 2.51303287471060 3.01490748109666 2.91353717932826 2.22146108295352 2.73174044417539 2.70315807869175 3.20774668699302 3.29426096247719 2.85751847551049 2.5933033809912 2.83359052586716 2.78882692134427 2.98528771821569 2.57426264902162 2.57988630294528 2.59369453211582 2.72710675526435 2.31174747511102 2.52993203787194 0.177822782963493 0.183915381372115 0.186003575505761 0.181768575680524 0.179931606516737 0.179304298836739 0.184087083552681 0.179418563240054 0.180497947357150 0.181290256335978 0.183768997650016 0.18016398816689 0.185790677657778 0.182535876053347 0.187928023926174 0.177822782963493 0.182883144778776 0.181309166484689 0.190201258603982 2 2 + 13766924 13767879 13767353.364 13764670 13768154 + gene protein_coding_gene FALSE TRUE AT2G32410.1|AT2G32410.2 auxin-resistance protein, putative|catalytic similar to AXR1 (AUXIN RESISTANT 1), small protein activating enzyme [Arabidopsis thaliana] (TAIR:AT1G05180.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594)|similar to AXR1 (AUXIN RESISTANT 1), small protein activating enzyme [Arabidopsis thaliana] (TAIR:AT1G05180.1); similar to putative auxin-resistance protein [Populus trichocarpa] (GB:ABG37639.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) -0.175481871585516 -1.44717886565683 0.176035622102309 1 0.353341377351153 5.4922564278584 -0.175481871585516 0.148781639007911
AT4G02910_at 2.28721398038745 2.69763892897082 2.30191081423197 3.06182316269463 1.97487842806671 2.2976972258295 2.13895498944104 2.69005385183953 2.54603590689526 2.78647691366441 2.23614520641262 2.27850011792254 2.23441902044592 2.41891153830686 2.32586043909118 2.07974909200631 2.44335160953280 2.68736723387435 2.75375173097614 0.233533396847331 0.231079028403317 0.238144972702832 0.238799911580234 0.230587362502733 0.241101481482816 0.235480531152827 0.237665248948319 0.239388450799088 0.242139441241621 0.233690198390368 0.233059653949086 0.230587362502733 0.231177752968358 0.237999159323815 0.233179074951832 0.243780557405614 0.234307659055259 0.241096383327207 4 4|0 -|/ 1288530 1289584 1288974 1288486 1289615 - gene protein_coding_gene FALSE TRUE AT4G02910.1 unknown protein -0.200885757466769 -1.44717632277176 0.176036318977627 1 0.35333829475321 4.94800119737154 -0.200885757466769 0.185889818837761
AT3G23260_at 2.74172993989244 2.43759345490614 3.09651301862385 3.00400069379189 2.54322629540928 2.34189374160153 2.40241276278614 2.22220084424857 2.14892125782898 2.91704454225199 2.59813298528177 2.40451393212242 2.49446299323241 2.39129078716156 2.49711674341168 2.71013699800382 2.68966100777796 2.5338472209036 2.64040782780013 0.196550007460206 0.203629730219168 0.202676267305652 0.198874326678133 0.199823392260952 0.199571767222003 0.202020384002977 0.205776199453361 0.200041116610730 0.196914531045175 0.196550007460206 0.199098770530021 0.196550007460206 0.203502802239022 0.203057283646264 0.206659498939922 0.199876892589164 0.196550007460206 0.196550007460206 3 3 + 8313881 8314403 8314114.273 8313341 8314429 + gene protein_coding_gene FALSE TRUE AT3G23260.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G21130.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37944.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.133264155545760 1.44694823701210 0.176098835222466 1 0.353061813405342 5.15303961529778 0.133264155545760 0.0722010655064215
AT3G19690_at 1.09084226441626 1.13965447009761 1.40884638795881 1.19197037903062 1.23006157018473 1.41837815843826 1.15987304046855 1.63448526353283 1.68822083799439 1.53915301590083 1.63711761119288 1.44816879913034 1.56801510187730 1.49006990593014 1.7323831971362 1.52695194195428 1.66273532384592 1.18915502768932 0.66912795437121 0.217019498751307 0.217846005232418 0.217720392772484 0.218035354872867 0.219423935365716 0.220654954973953 0.214702587481888 0.219189911550095 0.215549334117834 0.213203842706781 0.217768567814518 0.220351674507170 0.223918476708311 0.21739597108784 0.21816424253607 0.216314870116427 0.217179648661341 0.225556757235687 0.225408180722367 3 3 - 6842386 6842817 6842654.455 6842226 6842862 - gene protein_coding_gene FALSE TRUE AT3G19690.1 pathogenesis-related protein, putative similar to ATPRB1 (Arabidopsis thaliana basic pathogenesis-related protein 1) [Arabidopsis thaliana] (TAIR:AT2G14580.1); similar to pathogenesis-related protein 1a [Malus x domestica] (GB:ABC47922.1); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) 0.144545520890017 1.44687097752747 0.176120015632936 1 0.352968167304398 2.69959321660764 0.144545520890017 0.0963741615993043
AT2G39820_at 1.55855013246916 1.13243644710682 1.65000327059938 1.98387431918186 1.46367781526155 1.44186997698503 1.37097251300383 1.67270424220746 1.59080805517849 1.80141668616066 1.21984974718029 1.22569455383404 1.33832196773442 1.53627853895497 0.867569465969819 1.12810286509324 1.32013015305733 1.29695269218602 1.83797456175803 0.180922557425709 0.188667713363766 0.180324344527884 0.180291450952712 0.184020841886168 0.180291450952712 0.186976215508842 0.185101172263009 0.183082435121019 0.196433114696707 0.181067244453865 0.186469322205815 0.18109379702718 0.183243201496514 0.189588147802066 0.180291450952712 0.180291450952712 0.190703057064314 0.181294020501905 2 2|0 +|/ 16625942 16626612 16626386.6 16625355 16626767 + gene protein_coding_gene FALSE TRUE AT2G39820.1 eukaryotic translation initiation factor 6, putative / eIF-6, putative Identical to Eukaryotic translation initiation factor 6 (eIF-6) [Arabidopsis Thaliana] (GB:O22290); similar to EMB1624 (EMBRYO DEFECTIVE 1624), translation initiation factor [Arabidopsis thaliana] (TAIR:AT3G55620.1); similar to Os07g0639800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060417.1); similar to putative eukaryotic translation initiation factor 6 [Trifolium pratense] (GB:BAE71264.1); contains InterPro domain Translation initiation factor IF6; (InterPro:IPR002769) -0.150298378943828 -1.44626239802705 0.176286931337563 1 0.35223062266328 3.02676722245205 -0.150298378943828 0.107316270242462
AT3G11460_at 2.42677549127747 2.31891717589873 2.38634736516237 2.33224268465895 2.19750196210664 2.17900828547246 2.35542945875019 2.18095133402878 2.14139897951162 2.23158518009703 1.88544473591120 1.97629120874179 2.05268670013223 2.12898736285465 2.14712434566993 1.68126437662888 2.15243059723665 2.09340881154569 2.26005632733440 0.201754862992362 0.197023791007509 0.208265263788623 0.201706395668462 0.196971093995728 0.203690077112616 0.199710608169762 0.202259493440086 0.204683507299167 0.214996378993677 0.202002744183649 0.205931433286268 0.200146823805259 0.200026865340647 0.203319113270703 0.203102989863901 0.209011410918350 0.208131052166119 0.199432194792518 3 3 + 3609543 3610091 3609905.909 3608256 3610127 + gene protein_coding_gene FALSE TRUE AT3G11460.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G30700.1); similar to Os01g0819800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044643.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE79494.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.121526009473119 -1.44578493730757 0.176417979188139 1 0.351652123619643 4.41000585116335 -0.121526009473119 0.0368510407474144
AT3G03310_at 4.38330749671359 4.97676011939075 5.23393696162725 5.40634367237891 4.83399125301973 4.94855354741848 3.93928438973888 4.22555886293715 4.2400184674269 4.15465578467116 3.69664362348858 3.73225852882573 4.07579428947809 3.61960330512252 3.22213674919199 3.945249932123 4.16107094364179 4.13923962404995 4.30788163739721 0.222080432586159 0.226008456460049 0.227387652918237 0.229327016657825 0.229512648214934 0.244464182710346 0.228350830514895 0.220895330356626 0.225501939264924 0.225309089463167 0.229579722517699 0.229823502319366 0.226845109046796 0.226671874497110 0.232249434141597 0.220895330356626 0.228613347883711 0.224772984834784 0.222066313810849 3 3|0 -|/ 778866 779610 779327.778 778575 781587 - gene protein_coding_gene FALSE TRUE AT3G03310.1 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to lecithin:cholesterol acyltransferase family protein / LACT family protein [Arabidopsis thaliana] (TAIR:AT4G19860.1); similar to phospholipase A1 [Nicotiana tabacum] (GB:AAQ05032.1); contains InterPro domain Lecithin:cholesterol acyltransferase; (InterPro:IPR003386) 0.157146484703891 1.44559066843654 0.176471323563638 1 0.351416779898165 8.7725594983974 0.157146484703891 0.119518983299124
AT4G21230_at 1.09153225350715 1.37364926403662 0.661823087168366 0.856290950488607 0.999721384374454 1.03730427433644 0.580975245090297 0.518543964161436 0.46495067451529 1.67686209514792 0.431542554016232 0.541306799408071 0.91423560733234 0.773297738654827 0.343459264503666 0.571601962380166 0.94286053538316 0.707410391242046 0.582309457740517 0.239713039256488 0.228036332031193 0.230074619703689 0.230783896418425 0.233858968228352 0.227887434246913 0.23489053016227 0.228654299331844 0.246684261594791 0.235691302947716 0.226983568281869 0.231052273675041 0.227437542616575 0.231843268702328 0.240381360998639 0.231856089102712 0.229804747047329 0.237125037668502 0.234830204443348 4 4 - 11319262 11319971 11319540.636 11319155 11321689 - gene protein_coding_gene FALSE TRUE AT4G21230.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G38830.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.128608321729878 -1.44539214968159 0.176525849094334 1 0.35117630897447 1.67060760243691 -0.128608321729878 0.0606229768441093
AT3G01320_at 6.95420998654903 7.27839396491622 7.31467359000528 7.2483730270767 7.60027745408034 7.44630542978735 7.25069021546122 7.00191538560492 6.92302326875088 6.80938450152926 6.30691117897627 6.33646801559529 6.03426756824356 6.29922866827362 5.76551268814469 6.71563975881771 6.60584526236226 6.03862674777693 6.70886229251935 0.168863523830698 0.168172063399306 0.173002772050075 0.175959448672250 0.168439189985417 0.172096302482316 0.175009793812984 0.168396016238440 0.190503729854782 0.167168190915428 0.167168190915428 0.168784598711896 0.174929815648198 0.172252923808498 0.173683078492070 0.167168190915428 0.171586485235662 0.181427848201937 0.175003573938900 3 3|0 +|/ 112221 113080 112518.7 106662 113625 + gene protein_coding_gene FALSE TRUE AT3G01320.1 similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to transcriptional repressor protein-related [Musa balbisiana] (GB:ABF70137.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE86951.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) -0.134919607235734 -1.44534123997466 0.176539834358313 1 0.35111464418485 13.8001394684969 -0.134919607235734 0.0764359778084938
AT2G16620_at 1.54517742014668 2.02022589683192 2.50523413147257 2.02313314330099 1.87592292611585 2.06612619074921 1.798272623047 2.15405925875147 2.13369775244424 2.06632707475806 1.93262229241229 2.22573347157314 2.29855837356787 1.82160333045284 2.02732448584508 2.05851191457275 2.22066667669037 2.20611655828979 1.80744141654825 0.166920650372569 0.169788121123201 0.164212747035786 0.165961809752696 0.168154191629490 0.164212747035786 0.168907234922810 0.167558329118511 0.164212747035786 0.172773345853695 0.175865406841102 0.164795480095466 0.166749787057544 0.169105145152875 0.175755101896271 0.165800345604363 0.169676313922648 0.173084096173227 0.169212330585898 2 2|0 -|/ 7212474 7212961 7212737 7212473 7213000 - gene protein_coding_gene FALSE TRUE AT2G16620.1 protein kinase-related similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G23650.1); similar to receptor-like kinase RHG4 [Glycine max] (GB:AAM44275.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.167286844112027 1.44507615380267 0.176612670677922 1 0.35079357927086 4.04920939172315 0.167286844112027 0.136357173495281
AT1G80600_at 9.39488311491874 9.34856886850111 9.22559897586887 9.16949523886636 9.00039543935035 8.86441288280201 9.6015607998656 9.45751744694082 9.4629920753249 9.30681496822154 9.45652422607527 9.48232397911893 9.32193926654717 9.45727875756743 9.6182372352057 9.5630234963059 9.18482966777175 9.53154416032086 9.15740371863922 0.0932499900343397 0.0859735360117744 0.0932447019316222 0.0931457605456795 0.0904950833485 0.0942625001208358 0.0906128295114096 0.0889414040170576 0.0934261710223985 0.090659069112643 0.0862435935972494 0.0894907965405937 0.0914970470181184 0.08917225659991 0.0859735360117744 0.0859735360117744 0.093401061800263 0.0909817421044337 0.0896923394707151 1 0|1 /|- 30303671 30304061 30303847.9 30303391 30305445 - gene protein_coding_gene FALSE TRUE AT1G80600.1 acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative / AOTA, putative / ACOAT, putative similar to delta-OAT (ornithine- delta-aminotransferase), ornithine-oxo-acid transaminase [Arabidopsis thaliana] (TAIR:AT5G46180.1); similar to Acetylornithine aminotransferase, mitochondrial precursor (ACOAT) (Acetylornithine transaminase) (AOTA) (GB:O04866); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814); contains InterPro domain Acetylornithine and succinylornithine aminotransferase; (InterPro:IPR004636) -0.121382289391213 -1.44499064776941 0.176636170169279 1 0.350690024940683 18.6383205222272 -0.121382289391213 0.0365192012937168
AT2G16760_at 1.78675256966476 1.72103534397591 1.76729794549239 1.81670056833532 1.43189357191967 2.11585651967582 2.02349192364696 2.05870938264756 2.39652735777136 2.06077029336051 1.79209984712185 1.36274196634475 1.88556102704198 1.38468462662123 1.95899929505966 1.85027391080742 2.33628422693248 2.22271799498238 1.68838555033749 0.186803008905134 0.193052784115983 0.189910243926012 0.198146026677395 0.189172762137009 0.191027431620610 0.193420854662784 0.193694022140675 0.196931912987433 0.193531840965934 0.194705716827661 0.200112492348333 0.18994108900928 0.188763331007245 0.189402133983812 0.190059051634779 0.187698143463637 0.192912046337775 0.192387594031888 2 2|0 +|/ 7283229 7284105 7283805.9 7282782 7284315 + gene protein_coding_gene FALSE TRUE AT2G16760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G47370.1); similar to Os03g0307400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049896.1); similar to Os10g0443000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064702.1); similar to hypothetical protein LOC_Os10g30620 [Oryza sativa (japonica cultivar-group)] (GB:AAP53978.2); contains InterPro domain Soluble quinoprotein glucose dehydrogenase; (InterPro:IPR011041) -0.156975429460240 -1.44481332664479 0.176684911539044 1 0.350475288235804 3.78908294268001 -0.156975429460240 0.119370713235684
AT4G08930_at 7.01323025947741 6.9096471456289 7.73304924792448 7.76313243846553 7.82728330242926 7.65234903034489 7.75486125724765 7.57968299404612 7.93911792861055 7.53741312556343 8.19725922683766 7.28537317090579 7.70393830574953 7.97924055861897 6.93196983307633 7.67636241239507 7.45288356134814 7.28819923766083 7.76133777401854 0.140327667269565 0.142203269673418 0.142387507396526 0.146943956877511 0.137793284555870 0.137793284555870 0.139887609391694 0.140150806912021 0.146205186896673 0.140025048523152 0.146252583729381 0.138329085937257 0.141869265039937 0.145765250836702 0.144771666584407 0.140796107398727 0.140775090099213 0.146544116317585 0.143997732683337 4 4 + 5730096 5730651 5730363.7 5729189 5730847 + gene protein_coding_gene FALSE TRUE AT4G08930.1 ATAPRL6 (APR-LIKE 6); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. similar to ATAPRL4 (APR-LIKE 4), electron carrier/ protein disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G34780.1); similar to adenosine 5'-phosphosulfate reductase 3 [Zea mays] (GB:AAW63053.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.124022551475442 1.44476978732801 0.176696881213660 1 0.350422564543057 15.1843342416396 0.124022551475442 0.046732412513691
AT3G42120_at 1.50936640787192 1.34734367649547 1.58955207259993 1.67049998929855 1.59882577144178 1.45179147864325 1.58346467273337 1.55100973536781 1.48356952978176 1.40076674739892 1.83931882771695 1.64094357093705 1.46569699689972 1.47152660749890 1.46233056078337 1.47930538386520 1.72728613502785 1.94617562811634 1.50816151709996 0.161443136291759 0.172367160584779 0.163513388005072 0.16601600067268 0.166427631290442 0.161028080526839 0.162255044511045 0.163677527619479 0.172417389394357 0.165950442940162 0.169299966171795 0.161256137887975 0.173838119718261 0.172058212618521 0.161075293025643 0.169325869459786 0.164588854321766 0.173033476358658 0.162217792948604 3 3 + 14307358 14307503 14307416 14306707 14307936 + gene protein_coding_gene FALSE TRUE AT3G42120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12610.1) 0.122389118653767 1.44469493193068 0.176717461806654 1 0.35033192123396 3.08435117319779 0.122389118653767 0.0407602835492239
AT3G55930_at 2.02009342933392 2.06919205924393 1.99642123336924 2.2119699031333 1.74708867436549 2.03470686769807 1.78752027123234 2.06250498651605 2.41586358808911 1.84742188198649 2.10537916062178 1.69220014141494 1.74881944240552 1.74367327941602 1.94696600166985 1.66158206010703 1.96878295058727 1.92513034466692 2.13733484452034 0.199842415727997 0.20222945868616 0.207425646488062 0.204470990367986 0.205414405788646 0.199842415727997 0.204028063791674 0.205533826780465 0.203794212316495 0.205233860472305 0.201217565269047 0.203080733616665 0.207073210451136 0.2050446188157 0.209553500584974 0.208667552657985 0.206302718925734 0.205719703665048 0.206493860291564 3 3 - 20756361 20756904 20756615.818 20756361 20757943 - gene protein_coding_gene FALSE TRUE AT3G55930.1 RNA splicing factor-related similar to small nuclear ribonucleoprotein family protein / snRNP family protein [Arabidopsis thaliana] (TAIR:AT1G28060.1); similar to Putative u4/u6 small nuclear ribonucleoprotein (ISS) [Ostreococcus tauri] (GB:CAL53657.1); similar to Os09g0249600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062673.1); contains domain U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED (PTHR14212) -0.135877224597091 -1.44457690456934 0.176749916155428 1 0.350189006677911 3.98249056684978 -0.135877224597091 0.0787755632719472
AT4G01960_at 7.07522923006174 7.75667465391635 6.82305358705719 7.62390861602263 8.05267046563551 7.03989894788861 6.63557756113926 6.57775977679677 7.11578696698262 6.66659365477163 7.27420492924078 6.85264344656501 6.95563698770135 7.37915403428722 7.06379375085443 7.14171628527885 6.49637838325116 6.80879684109268 6.82652359842953 0.246386017532054 0.229361831307457 0.234152256221547 0.228579124328188 0.230366115302223 0.236608206580846 0.235077055145563 0.238294635902845 0.247079580528701 0.224239761652842 0.231753903168594 0.226478219342242 0.234623048249912 0.235851444271186 0.229806682792328 0.229739564786166 0.232290394115290 0.244534542083619 0.228153362781449 4 4|0 -|/ 851577 852247 851852.7 851210 853139 - gene protein_coding_gene FALSE TRUE AT4G01960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02380.1); similar to hypothetical protein MtrDRAFT_AC153352g19v1 [Medicago truncatula] (GB:ABE87668.1) 0.250239220447564 1.44311708413777 0.177151746823121 1 0.348421997628969 14.1311842659874 0.250239220447564 0.252848539325848
AT1G09575_at 2.20861352881725 2.23509678973033 1.63372864379521 1.85311418057657 2.41000267211368 2.06054317621627 2.61282613466404 1.98084874587365 3.1034842265704 2.42569732638162 2.63258858151379 3.22267259320318 2.40871973518062 2.56160751934216 2.81875795662623 2.8637559026738 2.0977587969333 2.52602227485280 2.56661679998219 0.21295362449873 0.210005699765192 0.217948571009994 0.219387630008073 0.211207593661249 0.215371867261918 0.220554225060064 0.212385913363986 0.227183246375249 0.218000143021148 0.210226365436278 0.208985103445438 0.212138654929375 0.209594538034908 0.220510956819399 0.211101688337390 0.220990661973238 0.219791888737895 0.209741561812805 1 1 - 3101855 3102525 3102200.455 3101673 3102927 - gene protein_coding_gene FALSE TRUE AT1G09575.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G57610.2); similar to Os12g0122100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066028.1); similar to hypothetical protein LOC_Os11g03130 [Oryza sativa (japonica cultivar-group)] (GB:ABA91271.1); similar to Os01g0817000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044621.1); contains InterPro domain Protein of unknown function DUF607; (InterPro:IPR006769) -0.163556581266609 -1.44310754567109 0.177154374937341 1 0.348410455817544 4.79438916948278 -0.163556581266609 0.130693367922179
AT1G04490_at 1.66623712884081 1.64026245618743 2.39984120972114 2.30932326976227 1.06781310273749 1.83200785623851 1.57908426180872 1.85938050667265 1.92050904018201 1.38196133620235 1.98476222245009 1.60809505867421 1.83533741498368 1.96712933434185 2.00892624577046 1.67609163303217 1.98893099024523 2.30266970178835 2.08732957407917 0.200012959543642 0.198467839438389 0.195848609886015 0.210243265019316 0.194029772998962 0.194029772998962 0.194029772998962 0.194196535365192 0.195433896098055 0.203847448728753 0.204321084714662 0.194298426712801 0.195131227160210 0.200418422606844 0.199941308644873 0.194029772998962 0.202892481337694 0.194029772998962 0.197569972633394 1 1 - 1218284 1218764 1218476.222 1217947 1220136 - gene protein_coding_gene FALSE TRUE AT1G04490.1|AT1G04490.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33360.2); similar to Os03g0139200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048913.1); similar to Bromo adjacent re (GB:ABE92116.1); contains domain Transcriptional factor tubby, C-terminal domain (SSF54518) 0.170449056455182 1.44272698113726 0.17725925815845 1 0.347950002634535 3.65329012832043 0.170449056455182 0.141802198219430
AT3G58000_at 1.57920497601996 1.77467033783425 1.5599459836194 1.78537104315776 1.84810047662932 1.44069475000791 1.53013701834161 1.75189839984129 2.05190438644766 1.56704089995056 2.3501140816754 2.30194587238616 1.98182686308212 2.16456644053932 1.36689143872121 1.99657778327711 1.29091744112188 1.86601878187976 1.26250452202781 0.173204120612482 0.173665236131888 0.177336186686022 0.170615280832980 0.174404307570229 0.179505114653894 0.179637173213919 0.171121949467043 0.177075570368197 0.173670478235955 0.178109835437197 0.179525394778254 0.170897690711984 0.172186927976630 0.172154806142061 0.172610973335268 0.175894412536549 0.170641520607630 0.173234807734937 3 3 + 21485955 21486430 21486198.727 21485927 21486454 + gene protein_coding_gene FALSE TRUE AT3G58000.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G42140.1); similar to H1005F08.13 [Oryza sativa (indica cultivar-group)] (GB:CAH65984.1); similar to Os06g0618700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058086.1); similar to OSJNBa0087O24.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03588.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.14362889101884 1.44244267441702 0.177337647270737 1 0.3476060654776 3.42975651017013 0.14362889101884 0.0954441108790728
AT3G01430_at 3.22427721897901 2.94974730647951 3.23488499522954 3.32300405315811 3.95063148429009 3.57982146740745 2.81205546021083 3.35065667588467 2.98131542525967 2.86049094866112 3.14820415674435 3.20289783611724 3.0760125996094 2.78003428873309 2.81801100679282 2.64714381993255 2.36603468840512 2.68600672361729 3.03810454120854 0.218780738622125 0.218868750260273 0.222893796232882 0.222931959881701 0.221075634721846 0.226772668239718 0.218098508983272 0.220650222571034 0.217182325101521 0.218872714567838 0.216827600872909 0.217651863082885 0.213218827833295 0.215530166416304 0.213218827833295 0.219664616348069 0.233082315696882 0.219621575961672 0.214875154936977 3 3 - 165634 166103 165898.727 165415 166254 - gene protein_coding_gene FALSE TRUE AT3G01430.1 similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G14890.1); similar to Os02g0743200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048094.1); similar to NHL repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38163.1) 0.159237084791833 1.44233252551639 0.177368025470976 1 0.347472825839039 6.20339155522344 0.159237084791833 0.123673316548137
AT4G33990_at 1.09370075942614 1.43901442605899 0.920732089361698 1.35899593432721 1.35371854916992 1.07509502688980 1.74230216604644 1.23051449814135 1.24619962309823 1.51713176416629 1.40723475529365 1.45648322190209 1.07301081431916 1.20031266914993 1.49251229224274 1.7674337443126 0.92407957778132 1.17439867284899 1.58877260259394 0.206448387530985 0.197562583403356 0.204911278121694 0.198876084798234 0.205006173220026 0.198963677169278 0.197562583403356 0.203287317211934 0.201599565189229 0.202966077272951 0.207981451325729 0.215973727883537 0.210999258253606 0.198083418628098 0.200959743170550 0.202391674291126 0.205030484779503 0.204121658332473 0.203615969263978 4 4 - 16290245 16290721 16290506.727 16290146 16292617 - gene protein_coding_gene FALSE TRUE AT4G33990.1 EMB2758 (EMBRYO DEFECTIVE 2758); binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF96424.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.169007836976289 -1.44226630575279 0.177386290490213 1 0.347392727483228 2.65807645539476 -0.169007836976289 0.139614944048887
AT1G61170_at 4.17366211406016 3.86969579534367 3.09591566492248 3.07517727041091 3.09147717857709 3.71952827798159 3.00293957830766 2.96278347611602 4.35777528858806 3.45743388475093 4.37806684631443 3.98520277569281 4.01228662148532 3.76718219871453 4.03337333050321 3.74977426216508 3.39066183438106 3.82602798135365 4.03892221975894 0.214327539527882 0.215125692163274 0.226400500586705 0.215283963005509 0.212021596649631 0.224909540180347 0.222032097905009 0.221954550920588 0.226867589296570 0.235513025396724 0.215588866444858 0.219031428152282 0.210080552559141 0.221358938552163 0.214654702188988 0.210080552559141 0.222726495855486 0.211883201046749 0.213048818390965 1 1 + 22553545 22554095 22553805.727 22553303 22554340 + gene protein_coding_gene FALSE TRUE AT1G61170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11120.1); similar to CK25 [Nicotiana tabacum] (GB:ABE01833.1) -0.157650396345125 -1.44225458088376 0.177389524660517 1 0.347378545520885 7.2959969756444 -0.157650396345125 0.121000521361278
AT3G28360_at 0.776684667226359 0.971452460666103 0.75473767557212 0.618618918055057 0.450356244292214 1.01662795204695 0.229741898008508 0.548580486729089 0.967485017131943 0.781425366832614 0.478610442218837 0.73689703926523 0.615463789832759 0.419599260274346 0.574966574760245 0.162584372164856 0.683362148554498 0.526663632550612 1.00213970570334 0.197288893904684 0.191805637224097 0.195334189045302 0.201176638465751 0.191805637224097 0.193287565369527 0.196724217098177 0.195559033311133 0.196630723327604 0.195353130867733 0.195187706243673 0.197917867328365 0.193669355622785 0.194922225053612 0.191832873759712 0.194065390318219 0.194128402940525 0.198388159273544 0.194444893149223 3 3 - 10612348 10612778 10612543.545 10612261 10616236 - gene protein_coding_gene FALSE TRUE AT3G28360.1 PGP16 (P-GLYCOPROTEIN 16); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 18 (P-glycoprotein 16) (MDR18) [Arabidopsis Thaliana] (GB:Q9LSJ8;GB:Q8RXD2); similar to PGP18 (P-GLYCOPROTEIN 18), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G28390.1); similar to P-glycoprotein, putative [Arabidopsis thaliana] (TAIR:AT3G28415.1); similar to PGP17 (P-GLYCOPROTEIN 17), ATP binding / ATPase/ ATPase, coupled to transmembrane movement of substances / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G28380.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE79909.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABD33400.1); similar to P-glycoprotein homologue [Hordeum vulgare subsp. vulgare] (GB:CAA71179.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.156888984884611 -1.44201551205046 0.177455479982488 1 0.347089393202442 1.39174258982887 -0.156888984884611 0.119743886575824
AT1G36095_at 1.63470578630335 1.38876237703738 1.62643048881853 1.05309003084212 1.39032683120917 1.87959201756480 1.40652943074536 1.08895945263859 1.80717392233434 1.95994714839892 1.37250819655676 1.24037533956092 1.59638616656759 1.55139650950177 1.78832419997971 1.09168981619727 1.33978231963202 1.72289105251262 1.98978128886848 0.231182474740239 0.228734949051766 0.231948166749041 0.227605728812421 0.233354452122152 0.234039598980951 0.231249744284517 0.221525689405100 0.233754119866153 0.230938168653778 0.231040113954249 0.225285478210685 0.218260382662471 0.227869187400878 0.222920489898216 0.227652288040499 0.225994152828591 0.222586728985214 0.222726827530688 1 1 - 13492584 13493549 13492972.273 13492582 13493937 - gene protein_coding_gene FALSE TRUE AT1G36095.1 electron carrier/ heme binding / iron ion binding similar to DNA binding / protein dimerization [Arabidopsis thaliana] (TAIR:AT3G22220.2); similar to Zinc finger, BED-type predicted; Protein of unknown function DUF1544 [Medicago truncatula] (GB:ABE81073.1); contains InterPro domain Protein of unknown function DUF1544; (InterPro:IPR011523); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) -0.174213836354755 -1.44197317334441 0.177467162736778 1 0.347038188048180 3.12449287852699 -0.174213836354755 0.147801099641542
AT1G60870_at 8.16785831907714 8.57326075630822 8.3428298613046 8.36948296426847 8.9158634166125 8.92172394551009 7.90159121019164 8.36296571956372 8.12032698367525 8.21912233070291 8.2664367209857 7.84191632647301 8.1816027900924 8.29750081500695 7.77904493536727 8.4694340462274 8.14805367450452 7.67523359665238 8.16991072689976 0.163283944910915 0.168336221318068 0.172145610349503 0.171009051310408 0.187082139751241 0.162757792764377 0.160808874159851 0.167976001863684 0.175686252094842 0.163745594347349 0.157623484658834 0.160566979953876 0.157913644017352 0.168457921876079 0.170498997597314 0.16099056420981 0.174638122568967 0.176985571029335 0.164747722102921 1 1 + 22413380 22413832 22413603.818 22413137 22414319 + gene protein_coding_gene FALSE TRUE AT1G60870.1 MEE9 (maternal effect embryo arrest 9) 0.149336114188231 1.44186003253306 0.17749838551757 1 0.346901358427052 16.5705417958994 0.149336114188231 0.106391652371668
AT4G01630_at 0.898366979338442 0.79375239885904 0.986214131403962 0.624146731360195 0.80136898137961 0.941869529742692 0.895012637322403 0.799159617345351 0.5157657819989 0.692758761174622 0.702287253181232 0.845534429107274 1.25285964224313 1.23246614543311 0.993799412918327 0.90157139371945 0.892445803580117 0.947285530122714 0.885258596555504 0.246616651328664 0.246616651328664 0.255406276673974 0.256781305729272 0.250755109760614 0.247375069372799 0.255092335417947 0.252355321682164 0.262858469344243 0.249507844469666 0.246624581863854 0.251215768449026 0.246616651328664 0.246616651328664 0.248878626523053 0.247246638880842 0.252327266495294 0.268060735656063 0.246953827043385 4 4 + 700939 701484 701207.273 700653 701527 + gene protein_coding_gene FALSE TRUE AT4G01630.1 ATEXPA17 (ARABIDOPSIS THALIANA EXPANSIN A17) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Putative expansin-A17 precursor (AtEXPA17) (Alpha-expansin-17) (At- EXP17) (AtEx17) (Ath-ExpAlpha-1.13) (EXPA17) [Arabidopsis Thaliana] (GB:Q9ZSI1); similar to ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN A11) [Arabidopsis thaliana] (TAIR:AT1G20190.1); similar to alpha-expansin precursor [Nicotiana tabacum] (GB:AAC96077.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.132465211650233 1.44117888241743 0.177686457068085 1 0.346077740722117 1.67696583310955 0.132465211650233 0.0715545393816913
AT4G10330_at 6.85046342973179 6.91414747626712 6.94034823668917 6.77312836295322 7.50895166030784 7.19967218414534 7.29315888551287 7.5085190374877 7.03885565929482 6.894787537263 6.64030362007193 6.57634666771389 6.4811816007439 6.55774606949353 6.47331260859595 7.10353244847665 7.1632289855027 6.76679964098962 6.91547111223627 0.173803981096153 0.172766968164676 0.17024993166545 0.177979023871843 0.177189421858569 0.173453591965356 0.185936387910252 0.179041468587643 0.175286912828057 0.177060681780187 0.182011552602389 0.176563270418366 0.175454366061707 0.180928858715732 0.181997589405403 0.176611481440887 0.173573055487699 0.182266048253199 0.17336878249086 4 4|0 +|/ 6406584 6406910 6406779 6406537 6407773 + gene protein_coding_gene FALSE TRUE AT4G10330.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G66820.1); similar to hypothetical protein Bpse110_02000371 [Burkholderia pseudomallei 1106b] (GB:ZP_00897669.1); similar to Os11g0242700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067592.1); similar to hypothetical protein Bpse4_03000890 [Burkholderia pseudomallei 406e] (GB:ZP_01336410.1) -0.132722705312740 -1.44108495497969 0.177712404545991 1 0.345964187575928 13.9585542715352 -0.132722705312740 0.0721975955057823
AT1G12530_at 6.33208546097536 6.35634404375546 6.84703770300826 6.46375562564869 6.73801569368637 6.82986984291159 6.88883185467131 6.30817868078786 6.13307477253935 6.60726294639904 6.60865171016544 6.6914943737869 6.24147205820122 6.43709108064576 6.40390612349326 6.36684292161559 6.53409134407615 6.62779248670363 6.52439331480471 0.218669233917264 0.213762302456877 0.213762302456877 0.219610830273428 0.220458547249453 0.214095273850909 0.217398944172335 0.219768813477056 0.228743706544067 0.220489842902311 0.215008472777692 0.214936260606659 0.216845732855221 0.221407387659852 0.213762302456877 0.220466391348507 0.219640801612824 0.231292679092714 0.213762302456877 1 1 - 4269256 4270685 4269765.364 4268990 4270785 - gene protein_coding_gene FALSE TRUE AT1G12530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56420.1); similar to Os03g0228500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049452.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM27468.1) 0.157825228677265 1.4410666117381 0.177717472246896 1 0.345942012161276 13.0507622499725 0.157825228677265 0.121519488014497
AT1G64400_at 8.559572819176 8.54049101313046 8.18050839429256 8.20473208325182 8.91563365837408 8.5827966370778 8.8557866021682 8.90471549635845 9.10284591622552 9.24146542391124 9.97928017165371 9.57829219460522 9.658134303537 9.76064606917477 9.30403194848214 9.27675827304346 9.7641381663577 9.8931080884372 9.11379177412971 0.135632195097634 0.124878636136721 0.142721937094553 0.134619576738601 0.125329755486132 0.136605862217313 0.129674202088219 0.134713320301179 0.147738722197042 0.133226280238758 0.130686869122014 0.129923001225673 0.126412004796973 0.128284417779460 0.127657181311906 0.12682063720209 0.132093832951181 0.141981207687225 0.129719461084987 1 1|0 -|/ 23919683 23920343 23919993.7 23919261 23923446 - gene protein_coding_gene FALSE TRUE AT1G64400.1 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) [Arabidopsis thaliana] (TAIR:AT1G49430.1); similar to acyl-CoA synthetase [Brassica napus] (GB:CAA64327.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00145.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.127436912181687 1.44086075998858 0.177774351485905 1 0.345693167578508 17.9952794329788 0.127436912181687 0.0584621127178599
AT1G62690_at 1.49348145264703 1.17546354306368 1.52869025967223 1.37593447530584 1.55897719956057 1.46716431793472 1.53970992450049 1.39575096661358 1.28497619230503 1.25351371910738 1.52151601511804 1.42030439942689 1.57047867532267 1.35663898193349 1.44571925682094 1.25560489243291 1.53058071545935 1.31974432516623 1.20348959005241 0.194239800546294 0.197367017928461 0.198434420842435 0.195510229319961 0.204828420056750 0.196497424795790 0.196983558870766 0.198304974240986 0.198798771990519 0.201335704353896 0.195621552587510 0.198214901260734 0.198699074490747 0.193491578346616 0.207555672548074 0.202872870886909 0.203450077146827 0.193491578346616 0.193491578346616 1 1 - 23214261 23214731 23214481.545 23214106 23215054 - gene protein_coding_gene FALSE TRUE AT1G62690.1 unknown protein 0.130918499316971 1.44072315804653 0.177812381134611 1 0.345526839936774 2.77934647151144 0.130918499316971 0.0678284895416947
AT1G05000_at 2.49140951315065 2.89198946829233 3.17155680354142 3.60062628166724 2.72520522319265 2.37797547761290 2.67010149404969 2.91639889319228 2.25099591994701 1.95796222714544 2.17964226584518 1.59985991870735 2.10914986836091 2.08575189847594 1.91952391996803 2.09381293976948 2.08720396455561 1.90614117968422 1.50252503983304 0.257131508202199 0.262751293074881 0.265951525337254 0.261717410946292 0.250918504802252 0.262227376709563 0.254398426709477 0.25797226835048 0.265047612506395 0.254521414262461 0.259382749193978 0.251333617402728 0.267481605291513 0.258234995836328 0.252088250534237 0.254867550114019 0.256038255283215 0.256366928189028 0.269912998581175 1 1|0 +|/ 1425717 1428334 1426387.778 1425592 1428781 + gene protein_coding_gene FALSE TRUE AT1G05000.1 tyrosine specific protein phosphatase family protein Identical to Probable tyrosine-protein phosphatase At1g05000 (EC 3.1.3.48) [Arabidopsis Thaliana] (GB:Q9ZVN4); similar to tyrosine specific protein phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G32960.1); similar to tyrosine specific protein phosphatase family protein [Capsicum annuum] (GB:AAX20039.1); contains InterPro domain Putative tyrosine phosphatase; (InterPro:IPR004861); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.160087059888996 1.44026058962467 0.177940273878089 1 0.344967781983069 4.80638963103539 0.160087059888996 0.125485016945116
AT2G40640_at 1.73741302978106 1.72099972755321 1.66904579044537 1.28965806383262 1.76018764982950 1.84701694901339 1.94514371395566 1.55975195618818 1.66133918231595 1.78716218104665 2.21014148025850 2.68302531769088 1.94382563676651 1.77180980521380 2.40212856538935 2.04053390739042 2.05906165978506 1.58608811910551 1.65635114904397 0.196046451395383 0.195174767345938 0.199689707644742 0.194329238618370 0.196584382127746 0.200340813189632 0.194529270456687 0.195949529912703 0.208398716633623 0.191534755191562 0.200771735642903 0.193230338171033 0.191534755191562 0.192259269619948 0.191534755191562 0.191534755191562 0.21684574735558 0.198418473937698 0.198298317489965 2 2 - 16969569 16970150 16969922.818 16968218 16970283 - gene protein_coding_gene FALSE TRUE AT2G40640.1|AT2G40640.2|AT2G40640.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05230.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO60024.1); contains domain RING/U-box (SSF57850); contains domain no description (G3D.3.30.40.10) 0.143054656862589 1.43980470774835 0.178066394375037 1 0.344416919979322 3.58549926786763 0.143054656862589 0.094828678361547
AT4G14810_at 1.90271190325456 2.36294891412919 2.12788032270688 2.51257327844438 1.66969953233122 1.95246559781215 2.02664579103106 2.13065265085247 2.62951060742861 2.37752643258363 1.94880080721986 2.0573015105206 2.37290797547355 1.94511584358857 1.61750428859488 2.04187680735972 2.78598915666468 2.31930103358124 2.20754688350039 0.152156260436182 0.148370399749990 0.152342783255305 0.156555920331965 0.153829367633741 0.150697397493181 0.158501881691756 0.15887013343311 0.155917107704939 0.158113861324892 0.157144109329655 0.1516772713015 0.165156041754574 0.153533018051453 0.158959936060792 0.153499247826092 0.158264516349724 0.152889195473486 0.150777945495959 4 4|0 +|/ 8504146 8504476 8504313 8504140 8504504 + gene protein_coding_gene FALSE TRUE AT4G14810.1 unknown protein -0.154423380977661 -1.43834324789164 0.178471221879973 1 0.342651741764373 4.3561777416767 -0.154423380977661 0.116163495896307
AT1G12700_at 1.8859796824332 1.95295106921616 2.07602231094583 2.23216710765403 2.32650447968014 2.24309725222371 2.14279574844984 2.32694847114031 1.82428979491327 1.77835124821176 2.00016970892811 1.71844569931989 2.114895868322 1.97466806249194 1.90867191519618 2.00803806157246 1.91435670717933 1.85160285009352 1.89435711380432 0.180046821598639 0.180480339806023 0.181917414374256 0.180708355803588 0.181115283762981 0.180640942045945 0.197216568781374 0.181028714877907 0.193436075952215 0.190440136174614 0.182536088721631 0.183509358632723 0.189271179955226 0.181605658242919 0.183634749037553 0.181323863194848 0.180046821598639 0.188379617585867 0.192911561744415 1 1 - 4324483 4324992 4324686.273 4322911 4326195 - gene protein_coding_gene FALSE TRUE AT1G12700.1 helicase domain-containing protein / pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12620.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G12300.1); similar to pentatricopeptide repeat-containing protein [Raphanus sativus] (GB:AAP86199.1); similar to fertility restorer homologue A [Raphanus sativus] (GB:CAD80166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.123151217488763 1.43804866147373 0.178552917555894 1 0.342296076651747 4.03265267927509 0.123151217488763 0.0456993282428356
AT3G28610_at 0.785383900301864 0.950142529076064 1.19679263128844 1.02905230674347 1.22400327014505 1.17775619908708 1.19186406717346 1.00262667245980 1.26109536122344 0.88107140445816 1.271609674448 0.93373211289751 0.838547189966351 1.3700571528971 1.12331867089399 1.04406370794382 0.922409889716889 1.26215830172476 0.916439625245825 0.201000789739985 0.204006050844448 0.197412244503714 0.202212838921842 0.197412244503714 0.197412244503714 0.199364670349958 0.202066362091959 0.20866506137507 0.202251414197033 0.201472162389207 0.197412244503714 0.212753611511311 0.197959206384611 0.200791250156507 0.211068628040948 0.205832825480565 0.212057965094031 0.207860489806011 3 3 + 10727118 10727540 10727339.455 10726227 10727651 + gene protein_coding_gene FALSE TRUE AT3G28610.1 ATP binding / ATPase similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G40000.1); similar to ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT3G28600.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78645.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.125299216740895 1.43799072838392 0.178568987488132 1 0.342226137484089 2.12733897263617 0.125299216740895 0.052840309783415
AT1G52520_at 4.27129626761599 4.64721674275327 4.44122537565447 4.19092464135315 4.80750723197218 4.80578368556377 3.91575409403862 4.42931460594141 4.22408296391903 4.09383182286059 4.35932523853452 4.38543785936804 4.41688908826293 3.92918023636752 3.9887159144177 4.28293416997031 3.76499377746305 4.02475268994878 3.91679526513082 0.223397787910056 0.219309434570193 0.223161710812992 0.222251499447229 0.223776695594180 0.224204977225656 0.221789294926742 0.21819423829932 0.229949817348846 0.225823421331421 0.21819423829932 0.21819423829932 0.220994002237242 0.227546349446432 0.221281097006642 0.218504532415296 0.228547833707751 0.221912248693265 0.219248380348073 1 1 + 19571337 19571767 19571562.818 19569438 19572053 + gene protein_coding_gene FALSE TRUE AT1G52520.1 FRS6 (FAR1-related sequence 6); zinc ion binding similar to FRS8 (FAR1-related sequence 8), zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G80010.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE93744.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.155628371935017 1.43785011976592 0.178607995712013 1 0.342056396734776 8.54976048349248 0.155628371935017 0.118351429356499
AT1G22280_at 9.86479007409516 9.30936308168986 9.9519111832838 9.24560670341737 10.0511365279954 8.81921081796202 9.08987698002584 7.75332497904421 9.0084876987813 8.69265670720672 9.10853994437874 9.1101965409237 8.91920019332714 9.07819991968697 8.73519104371291 8.77592699878286 8.86910855204584 8.66611216115792 8.59652046137604 0.130387595983637 0.136658127435176 0.131215836386582 0.130802146601477 0.131201697916398 0.135588185443906 0.133218039225049 0.141333488935958 0.1400965055383 0.131028506202611 0.129671518003247 0.131769497880078 0.131047912924609 0.128030526690164 0.135845346070360 0.130224152576177 0.136743843997586 0.141088703347593 0.138417030995256 1 1 + 7874606 7875458 7874970.727 7873922 7875867 + gene protein_coding_gene FALSE TRUE AT1G22280.1|AT1G22280.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G34750.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.32727432979077 1.43756191204543 0.178687974109252 1 0.341708510327120 18.0975013976259 0.32727432979077 0.350894837263651
AT1G70430_at 2.33785632218076 2.25394331786368 2.04161833400961 1.89849019097000 1.93926393638335 2.09455549177608 2.07697275595684 2.03334969377477 2.29581666238115 2.65601763993347 3.08579050766104 3.03909515853207 2.42235677789088 2.40139520941089 2.63037311591769 2.35809683095496 2.30002142693085 2.52789881533534 3.01852979675537 0.191877571534545 0.193320858241334 0.199329666943691 0.192770872900087 0.191488511074799 0.192036773140622 0.200984871535996 0.189564971250909 0.199859858338345 0.194272438730049 0.189186801691589 0.203330856295772 0.191760606871364 0.196442629708633 0.19600750202964 0.19305508924447 0.198795565225037 0.195430544371435 0.192689260457184 1 0|1 /|+ 26551284 26552384 26551600.7 26549252 26552419 + gene protein_coding_gene FALSE TRUE AT1G70430.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14720.1); similar to Os06g0486400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057665.1); similar to putative MAP4K alpha1 [Oryza sativa (japonica cultivar-group)] (GB:BAD19174.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.121604043426687 -1.43755832392218 0.178688970014509 1 0.341704179504502 4.71071451204066 -0.121604043426687 0.0400446758344039
AT1G53340_at 1.68970692920167 1.52412875553091 1.87957405545694 2.17159374224549 1.69790287005817 1.82348840334078 1.57900139728058 1.81629431910967 1.53674395915756 1.59509206052392 2.23791470797910 1.47844394739873 1.8805960957515 1.42904788823058 1.85445167687126 1.73602222628993 1.92039691132062 1.55656146836192 2.07590879963165 0.221012648893667 0.214686999203696 0.223602469934835 0.219758241630966 0.219584988936701 0.223031081024296 0.21924186553267 0.214686999203696 0.219198555437113 0.221176396916733 0.227687415446621 0.218889497916499 0.217512988145375 0.216647624226177 0.222109128239473 0.221251317719481 0.221440635367487 0.220379101982805 0.218089591282874 1 1 - 19902604 19903125 19902808.4 19902596 19904599 - gene protein_coding_gene FALSE TRUE AT1G53340.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02340.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G13900.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02330.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.133310671499525 1.43750380537322 0.178704102546629 1 0.341638377125626 3.52150846155127 0.133310671499525 0.0743876002783402
AT2G35210_at 1.27614319992925 1.03214897054289 1.27531145058239 1.34766415078510 1.10311915565171 1.35180248828859 1.38990023197173 1.63247167410023 1.30705380556225 1.66948713552501 1.15363360614217 1.39135054412194 0.94789069031601 1.25108864684103 1.47980396327389 1.01785413597820 1.66733286588288 1.88558654064877 1.68200542855734 0.230729510531515 0.235945059969014 0.231285928416822 0.228251928805882 0.238808990988071 0.231033096643062 0.247764438837401 0.230666398440216 0.227814264640703 0.231547989727674 0.238883983203521 0.228757516768660 0.232904593374639 0.237466288130094 0.230614911447841 0.227581853922854 0.234913618956321 0.229435773198496 0.233089454749394 2 2|0 +|/ 14844236 14844811 14844509.6 14843141 14845228 + gene protein_coding_gene FALSE TRUE AT2G35210.1|AT2G35210.2 AGD10/MEE28/RPA (ROOT AND POLLEN ARFGAP, maternal effect embryo arrest 28); DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to AGD8 (ARF-GAP DOMAIN 8), DNA binding [Arabidopsis thaliana] (TAIR:AT5G46750.1); similar to Os03g0854100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051935.1); similar to Os10g0574800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065477.1); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAW39027.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164)|similar to AGD8 (ARF-GAP DOMAIN 8), DNA binding [Arabidopsis thaliana] (TAIR:AT5G46750.1); similar to Os10g0574800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065477.1); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAW39027.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) -0.133361436770001 -1.43742471123519 0.178726058377944 1 0.341542915591321 2.75215337224756 -0.133361436770001 0.0745245803127486
AT3G03160_at 7.52387913102867 7.43351976112374 7.24781955258508 7.29760935939958 7.26129548141173 6.98034549898125 6.93896938638965 7.46811476526496 7.09951109125926 6.57625435344883 7.00661286907497 7.29186608164834 7.32585826333272 7.49832523831351 7.58020643966604 6.91200512277025 6.94017202056914 7.0609884071668 6.60794919554564 0.153929146015765 0.152626473787724 0.162043177797004 0.154772764456544 0.153886639457328 0.171503229809895 0.152591316576758 0.156379743121049 0.162680233906715 0.154334835986318 0.155865097291631 0.155014684808830 0.158629283394137 0.156468360648067 0.155332975179487 0.156410568347083 0.161392140820431 0.157821069351809 0.158552987629600 3 3 + 729886 730182 730031.636 729775 730474 + gene protein_coding_gene FALSE TRUE AT3G03160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17190.1); similar to Erwinia induced protein 2 [Solanum tuberosum] (GB:AAO32066.1) 0.148206402021234 1.43715378472249 0.178801282538515 1 0.341215950752588 14.2505653763909 0.148206402021234 0.105204079945264
AT4G05210_at 2.76711609255061 2.58378968587664 2.84081694311541 2.32946255859352 2.79619474822280 3.00370228205490 2.67951559100361 2.97382233882343 3.23343981006039 3.49973352536553 3.18552073429638 2.90205868034201 2.83492538809867 3.02943288902559 3.18184603909428 2.96663966944043 3.03141074942706 3.41484662213669 3.36043451600899 0.229026755610849 0.222455082493172 0.232206063040878 0.234114185762792 0.234406297199348 0.227001163101867 0.223034581383085 0.226634297811181 0.236127343155386 0.225703838563055 0.233155091103349 0.230165000721284 0.237181610865600 0.234940237610603 0.251468743041230 0.225160214427756 0.24129230906502 0.259280298376643 0.235817510581173 4 4|0 +|/ 2683503 2684858 2684159.5 2682865 2684897 + gene protein_coding_gene FALSE TRUE AT4G05210.1 bacterial transferase hexapeptide repeat-containing protein similar to bacterial transferase hexapeptide repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G21220.1); similar to Trimeric LpxA-like [Medicago truncatula] (GB:ABD32465.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.15235882403129 -1.43693725341951 0.178861422914254 1 0.340954661178691 5.96323805351058 -0.15235882403129 0.112787003561282
AT1G32990_at 10.2673704874448 10.2834664795914 9.64151998278928 9.4761133527813 10.2515921453894 9.98493476903049 10.6449422345882 10.5520929143416 10.3817149647571 10.7582224714330 10.9663860722659 11.2326356298184 10.6454783421905 10.8018658414501 11.4392372257393 10.9950359259633 10.3373068237740 10.9201094480177 10.5752531663885 0.0837848296840485 0.0847769654011753 0.0857976305358655 0.0869784959955544 0.0837132938600139 0.088232105109899 0.0817019615828367 0.0813344995171795 0.101687029855118 0.0870683562336918 0.087013767780605 0.0813344995171795 0.0846039313016345 0.083832107911764 0.0876010739660381 0.0827149963180108 0.0844706253103047 0.0813344995171795 0.0889165682056133 1 1 + 11955883 11957005 11956338.273 11955765 11957264 + gene protein_coding_gene FALSE TRUE AT1G32990.1 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 Identical to 50S ribosomal protein L11, chloroplast precursor (CL11) (RPL11) [Arabidopsis Thaliana] (GB:Q9MAP3); similar to ribosomal protein L11 family protein [Arabidopsis thaliana] (TAIR:AT5G51610.1); similar to 50S ribosomal protein L11, chloroplast precursor (CL11) (GB:P31164); similar to Os03g0122200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048798.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911); contains InterPro domain Ribosomal protein L11, bacterial; (InterPro:IPR006519) -0.12645062685049 -1.43657948815921 0.178960827878052 1 0.340523000185053 20.8822476030005 -0.12645062685049 0.0566990007807639
AT3G18430_at 8.57418354846803 8.3849832041313 8.8259635000244 8.76110668649494 9.26079070075215 8.51635303003508 8.70093817326934 8.42221466925793 8.111173063825 7.94234467391588 8.15330766867915 7.82065777811435 7.91556597659278 8.06955463031852 7.92590037882428 7.9937981800697 7.83126748619957 8.18782823064398 7.85158234603085 0.158215431454815 0.153285089522153 0.165668704189461 0.153285089522153 0.166579372237116 0.168882184509363 0.165488367068710 0.160656614843185 0.171743195609762 0.162950462356010 0.156667248267637 0.154613848897291 0.164330913323078 0.160334741971579 0.154876567292275 0.155236848362874 0.174724319445796 0.176878664862437 0.159545934669519 3 3|0 +|/ 6326187 6327288 6326673.3 6325921 6327638 + gene protein_coding_gene FALSE TRUE AT3G18430.1 calcium-binding EF hand family protein similar to CAM9 (CALMODULIN 9), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G51920.1); similar to calcineurin-like protein [Eucalyptus grandis] (GB:AAL25647.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.169670963567358 1.43588640566245 0.179153534085043 1 0.339686962861107 16.6586175569396 0.169670963567358 0.141849669719664
AT1G11470_at 1.40095095693682 1.56323114492373 1.37002761013216 1.49285091048748 1.20466263935898 1.28409388849513 1.17380816367540 1.25214684948635 1.18065027359407 1.60861634183128 1.61852321465919 1.47005767487748 1.58868056017994 1.13786588171641 1.89968192055107 1.67390326753786 1.58058809622798 1.06028228955176 0.964018511275456 0.213069029445415 0.211986244839574 0.216512998715833 0.217576571103395 0.210077628334976 0.214868858408963 0.216536235487896 0.219844996001524 0.226227432734246 0.214984402549301 0.214748300511173 0.210077628334976 0.213786596964261 0.225661110783296 0.210077628334976 0.214578946609122 0.214256467674914 0.212971420804072 0.219222619899124 1 1|0 -|/ 3859886 3860466 3860039.222 3859874 3860522 - gene protein_coding_gene FALSE TRUE AT1G11470.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02370.1) 0.121488652145988 1.43583947534624 0.179166589060685 1 0.339630362264612 2.72011797313516 0.121488652145988 0.0401646026950896
AT3G30250_at 0.886928085116401 0.526856878107065 0.808435134766876 0.907487928216047 0.932294416842432 0.881419122291986 0.924256514860962 0.920611089826815 1.33749224977330 1.14491279150571 1.16687335574190 1.15851441598331 1.47597998022725 1.39363446668977 0.920232505536309 1.27122296337153 1.37246728035780 1.30437780268074 0.717854455054831 0.190362206382766 0.190362206382766 0.190909290964902 0.195631802363471 0.195365553573743 0.190362206382766 0.193154967613290 0.197744606212166 0.197584916209495 0.190362206382766 0.19780431044717 0.192624559445293 0.194473148629880 0.190362206382766 0.190362206382766 0.193335176689636 0.194852693507961 0.197205844389136 0.196524333695167 3 3 - 11893252 11893882 11893589.364 11893238 11893911 - gene protein_coding_gene FALSE TRUE AT3G30250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31150.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) 0.129452844715243 1.43569997670812 0.179205399263433 1 0.339462126221261 2.01086915213767 0.129452844715243 0.065226760296192
AT3G21140_at 5.31842999282178 5.47205934547386 5.4012278521653 5.54807812741046 5.08141263442932 5.53361554218719 4.32364667962262 4.51756491168577 5.13323644993579 4.68017844762835 4.62815872557302 4.79698768437467 4.48470636102094 4.47872684863271 5.0558738529598 4.21783779422352 5.15065175370887 4.75762990000405 4.87553166172004 0.187912445783644 0.185576323760537 0.181670045509497 0.185882542312417 0.182101557788118 0.189477521876463 0.18472264504166 0.181784261335622 0.183051330424170 0.186079345314478 0.188267580469224 0.187037733040311 0.184937723456489 0.186063970789534 0.185500692637238 0.201109051686482 0.186818702278868 0.181240617248728 0.183280923818663 3 3 - 7409976 7410821 7410390.182 7409448 7412231 - gene protein_coding_gene FALSE TRUE AT3G21140.1 FMN binding similar to FMN binding [Arabidopsis thaliana] (TAIR:AT1G51560.1); similar to Os02g0148400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045891.1); similar to Os08g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062243.1); similar to pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Solibacter usitatus Ellin6076] (GB:YP_827186.1); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.141582200973933 1.43543767112192 0.179278395165047 1 0.339145813363242 9.94582295313633 0.141582200973933 0.0927512833503
AT4G00200_at 3.21292919599388 3.14438998373672 3.67045924984790 3.29973724479320 3.56896590048961 3.19766553273111 3.35683524172467 2.97191079534057 2.95569133025026 2.95452698915926 2.86917160571433 2.77834340548034 3.65863562447918 3.06136071245922 2.76951852961872 2.64264057688376 3.21052174446663 2.73195860225593 2.85897226835013 0.19042631563614 0.192501609354509 0.197859944847963 0.206148666096950 0.194776187997169 0.190285166085005 0.193441360541809 0.191004523927696 0.193284779651364 0.199923662178577 0.197696394816655 0.192838768085748 0.201046621946735 0.196477719033276 0.199656413560940 0.192966922751627 0.207356668219716 0.191467154296630 0.194201327859880 4 4|0 -|/ 82682 83337 82979.333 82445 84694 - gene protein_coding_gene FALSE TRUE AT4G00200.1 DNA binding similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT4G12080.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE87426.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.152447999341522 1.43539389602079 0.179290579608152 1 0.33909302889368 6.2470278327937 0.152447999341522 0.113236904175892
AT3G06230_at 1.02068564274008 0.585799195116231 1.14569756860412 0.72655742931363 0.892920186921075 0.9954468337294 1.07030445012951 0.90665248223773 1.06779703108884 0.414238393700263 1.32281242988714 1.05695830384585 0.920752849678446 0.67491519455923 1.19971454571729 0.823194880045366 1.57596871551750 0.833265464508061 0.900861280910313 0.193955742621131 0.193514112066697 0.202116046024004 0.195270678075732 0.196620935118274 0.197216789612905 0.197668196266426 0.1931483199295 0.1931483199295 0.1931483199295 0.201908830815792 0.204736998339903 0.201358482409082 0.196217927529495 0.199508027634969 0.197719213146197 0.211158911888065 0.200650969176135 0.197109584215656 3 3 + 1885788 1886305 1886025 1885502 1886383 + gene protein_coding_gene FALSE TRUE AT3G06230.1 ATMKK8 (Arabidopsis thaliana MAP kinase kinase 8); kinase member of MAP Kinase Kinase similar to ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9), kinase [Arabidopsis thaliana] (TAIR:AT1G73500.1); similar to double MYC-tagged mitogen activated protein kinase kinase 8 [synthetic construct] (GB:ABF55668.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.150471979078112 1.43516083621499 0.179355461741782 1 0.338812020708494 1.84063132353381 0.150471979078112 0.109736084014855
AT2G36010_at 2.32124866587708 2.35949259751603 2.19284625484586 2.05655635208771 1.49561172628460 2.34603223916395 2.04069744513753 1.98124636152631 2.20832698032792 2.35523246403660 1.99443580257360 2.2010547277859 1.83435082602416 2.16359017864501 2.15847404114748 1.83011674026344 2.25863714244688 2.23487144582557 2.27814465609508 0.164433247458672 0.164807320428235 0.159686114150572 0.161881034291431 0.164924807817275 0.159686114150572 0.165638730084710 0.161946403226056 0.168447292633446 0.17113626800251 0.160037677406107 0.159686114150572 0.161091860398098 0.169207688697715 0.164698106576403 0.161370235121399 0.167754988587495 0.165949232685483 0.166269888040503 2 2|0 +|/ 15128940 15129911 15129408.7 15126621 15130263 + gene protein_coding_gene FALSE TRUE AT2G36010.1|AT2G36010.2|AT2G36010.3 E2F3 (E2F TRANSCRIPTION FACTOR-3); transcription factor|E2F3 (E2F TRANSCRIPTION FACTOR-3) Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. similar to E2F1, transcription factor [Arabidopsis thaliana] (TAIR:AT5G22220.3); similar to transcription factor E2F [Daucus carota] (GB:CAB95727.1); contains InterPro domain Transcription factor E2F/dimerisation partner (TDP); (InterPro:IPR003316); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.174518147408116 -1.43513335648035 0.179363113210803 1 0.338778889420419 4.28172115359265 -0.174518147408116 0.149548371178040
AT2G38510_at 1.36318546346899 1.01832617264395 1.14643988693136 0.538968630334457 1.09202513687465 1.09681168715577 1.44798368236572 1.13265803767923 1.65255928770189 1.59046189528554 1.55812855526658 1.50696150601467 1.36500140471819 1.06829689706597 1.60694373415836 1.65145316304627 1.47045095096407 1.52329345876616 1.33049735224268 0.179128423863987 0.179128423863987 0.179128423863987 0.183660172676989 0.186963303421701 0.185121867822211 0.187227070955693 0.182303438393944 0.181356471184910 0.181937175061166 0.179128423863987 0.186151976789389 0.179128423863987 0.183834053703185 0.183156969781844 0.181872976865014 0.179128423863987 0.183585385650130 0.179289925530698 2 2 + 16131934 16132438 16132189.818 16131063 16132523 + gene protein_coding_gene FALSE TRUE AT2G38510.1 MATE efflux protein-related similar to ZF14, transporter [Arabidopsis thaliana] (TAIR:AT1G58340.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE90557.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.163833486687708 -1.43510099302611 0.179372124860068 1 0.338739870546883 2.6012110307618 -0.163833486687708 0.132632873236532
AT3G13520_at 8.9822390700136 9.26768172419848 9.12512797674473 9.45433823344872 9.19154148577745 8.95720273476735 10.0948926178145 10.1851698747667 11.1450644637636 9.99264054174688 12.2777619005182 11.2784356723054 11.4831622376609 11.6291567457799 11.5436780416886 10.8493871247846 10.2148371592780 11.5228290971970 10.7280620594504 0.110496611907326 0.105945813893686 0.122910791262539 0.101615925974005 0.108940149277829 0.117450001884351 0.108101608371610 0.107827913951468 0.108005809715493 0.106009857265844 0.107613865160029 0.102235898710803 0.103625935782532 0.105564618432715 0.105206128877454 0.101372120408818 0.115034426099570 0.104361491373584 0.1063449773119 3 3 + 4409108 4409252 4409183.545 4408932 4409447 + gene protein_coding_gene FALSE TRUE AT3G13520.1 AGP12 (ARABINOGALACTAN PROTEIN 12) Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling. Identical to Arabinogalactan peptide 12 precursor (AG-peptide 12) (AGP12) [Arabidopsis Thaliana] (GB:Q9LJD9); similar to AGP21 (ARABINOGALACTAN PROTEIN 21) [Arabidopsis thaliana] (TAIR:AT1G55330.1); similar to unknown [Brassica rapa] (GB:ABB97032.1) 0.138770214200429 1.43508600114582 0.179376299500421 1 0.338721795839562 20.3931883908857 0.138770214200429 0.087031448696546
AT3G29110_at 2.35518753151213 2.26214521049794 2.56098348199518 2.82715811174121 1.87679672180028 2.34965222908659 2.41301119245378 2.63974793277411 2.36276983499526 2.88524928450665 2.56543048991378 2.36737436340632 2.26210559967313 2.29562080459401 2.08348296021152 2.39236345376433 2.5167499966832 2.84009916905354 2.83744886556092 0.17505853633931 0.172410479753804 0.176861792347131 0.178136369977543 0.177922185391412 0.174426300761611 0.172594920231307 0.173368034146507 0.185035315068942 0.185559319953031 0.175110853101681 0.172410479753804 0.177127610835597 0.175083051069293 0.182210223177832 0.172410479753804 0.172410479753804 0.175021175556606 0.176878391808678 3 3|0 -|/ 11083399 11084762 11083947.3 11083389 11087128 - gene protein_coding_gene FALSE TRUE AT3G29110.1 terpene synthase/cyclase family protein similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20210.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20200.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20230.1); similar to Casbene synthase, chloroplast precursor (GB:P59287); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.146813985506071 -1.43488341941212 0.179432718514700 1 0.338477568714497 4.96586497632437 -0.146813985506071 0.103037695403308
AT1G20810_at 8.30490479710313 8.04225519532259 8.11892456825243 7.93323208646643 8.2639578763519 8.3319867419209 8.78141331014935 8.50942891522324 8.15203788734018 8.3712073108199 9.02547853782265 9.11106148177486 8.54996588593056 8.66303237026106 9.30002281212887 8.89368684694196 8.56676419944476 8.6262585701511 8.46344927045037 0.133958992993354 0.125164028179168 0.126420594498146 0.133919624527569 0.135196074116791 0.13166949936707 0.134989498305988 0.134574072047924 0.146061449566907 0.135774576998684 0.132561936943992 0.131275874706226 0.139793612917607 0.133057762200762 0.136136033238121 0.130285119800398 0.134818194030442 0.129043661058647 0.131090511621267 1 1|0 +|/ 7232158 7233120 7232615.286 7231995 7233555 + gene protein_coding_gene FALSE TRUE AT1G20810.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) [Arabidopsis Thaliana] (GB:Q9LM71); similar to immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative [Arabidopsis thaliana] (TAIR:AT3G10060.1); similar to Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] (GB:ABE83244.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) 0.132830222825918 1.43480597149474 0.1794542917394 1 0.338384205539511 16.8712289334790 0.132830222825918 0.0738418286095834
AT1G13050_at 0.560112128828469 0.605674153362601 0.627664998718211 0.788052434638691 0.425612318674809 0.876985587457625 0.585505518324115 0.751862400369782 0.944270409941639 1.06826458684594 0.829210707917512 0.81496210105584 0.844187334126681 0.673177224737962 0.76540334488742 0.824185960067091 0.837010793114124 0.595920186993903 1.30311662633780 0.195180725980239 0.195154541834759 0.19305668230546 0.202063162313835 0.19305668230546 0.20311447386534 0.198086107557431 0.193329361592677 0.194243378873785 0.205286332952335 0.211415845154579 0.196172022016339 0.200232333348696 0.201864333321558 0.195828325414117 0.198831642364516 0.200939610389932 0.208186482046671 0.199612022041547 1 1 + 4450964 4451473 4451252.818 4450566 4451519 + gene protein_coding_gene FALSE TRUE AT1G13050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26350.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB92611.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.139209858222401 -1.43433045503247 0.179586795762720 1 0.337811044554341 1.59179589970730 -0.139209858222401 0.0881071698577135
AT2G34830_at 1.29090112319358 1.55574591029901 1.17697110452725 1.05001461095577 1.18430604525762 1.56651588178645 1.17245291397401 1.59594747085353 1.25234720156356 1.5688128831138 1.31356601282596 1.15952142611585 1.32003975963150 0.971897082057085 1.44841840315768 0.71423475031622 1.49454299735454 1.19663317835047 1.21460933803821 0.201459281921951 0.202089364214781 0.206756117341292 0.204267958669191 0.202674933690670 0.205212338759103 0.201666390287922 0.201459281921951 0.205735640859559 0.210047132402049 0.201459281921951 0.204445678471053 0.207112358618058 0.201459281921951 0.212084773887125 0.203696214792268 0.205222918326663 0.207396139489051 0.202343387606784 2 2 - 14700925 14701413 14701124.273 14700835 14703457 - gene protein_coding_gene FALSE TRUE AT2G34830.1 WRKY35 (WRKY DNA-binding protein 35, maternal effect embryo arrest 24); transcription factor member of WRKY Transcription Factor; Group II-e Identical to Probable WRKY transcription factor 35 (WRKY DNA-binding protein 35) (WRKY35) [Arabidopsis Thaliana] (GB:O64747); similar to WRKY14 (WRKY DNA-binding protein 14), transcription factor [Arabidopsis thaliana] (TAIR:AT1G30650.1); similar to TPA: TPA_inf: WRKY transcription factor 66 [Oryza sativa (indica cultivar-group)] (GB:DAA05131.1); similar to Os02g0698800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047827.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.15110485848031 -1.43432265439412 0.179588970124913 1 0.337801643137869 2.59791347033824 -0.15110485848031 0.111037556764227
AT3G20150_at 0.184896345417826 0.447021813114577 0.472871144387352 0.559949358374214 0.187912405619371 0.243504679784920 0.592163381993558 0.563911595705511 0.543190252640761 0.68162353187828 0.565505039604592 0.814522936824918 0.801704391438512 0.36096671798948 0.734350752238156 0.100920119872802 0.489706833607705 0.156194397586290 0.78395140503415 0.197897897867059 0.193993338231132 0.194148599599057 0.195513419837585 0.191867859154985 0.194479501803285 0.201400482195435 0.192902110912906 0.198964699727115 0.191867859154985 0.195124230489717 0.195686533183563 0.195388013292187 0.203158690402328 0.202620639548106 0.196057911830764 0.196827993066327 0.193533860336014 0.193825040266808 3 3 + 7035885 7036460 7036147.545 7031418 7036505 + gene protein_coding_gene FALSE TRUE AT3G20150.1 kinesin motor family protein similar to PAKRP1L, microtubule motor [Arabidopsis thaliana] (TAIR:AT3G23670.1); similar to Os03g0587200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050576.1); similar to kinesin related protein [Lycopersicon esculentum] (GB:AAO15358.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Kinesin-related; (InterPro:IPR010544) -0.123771692444413 -1.43409409820110 0.179652688154532 1 0.337526199526863 0.992814988131185 -0.123771692444413 0.0490026032001445
AT3G62510_at 3.08240223476642 2.88131106918153 3.14980011931856 2.79888664125581 3.06610744258100 3.15417471713672 2.97126819177696 3.05092899354174 2.96745333930783 3.30019197683552 2.81170199033343 3.27841111758382 2.97245604614420 2.98086567583042 2.88025364267661 3.28863901493333 3.04258902947479 2.61056133081293 3.61256340529254 0.196697536537731 0.197568780568567 0.204622863578481 0.205562971748395 0.205328232905828 0.201392971753000 0.202964412251282 0.198341503464102 0.205081067048812 0.202638969199558 0.205002913460084 0.200823290878459 0.19775568987997 0.199301445983556 0.199557377821705 0.199182335987442 0.196697536537731 0.198065506026394 0.206395757094907 3 3|0 +|/ 23134376 23134695 23134585.6 23134374 23134750 + gene protein_coding_gene FALSE TRUE AT3G62510.1 protein disulfide isomerase-related similar to ATPDIL1-2 (PDI-LIKE 1-2), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G77510.1); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains domain PROTEIN DISULFIDE ISOMERASE (PTHR18929) -0.132226784207625 -1.43233229678524 0.180144495999361 1 0.335403936918399 6.15765374525434 -0.132226784207625 0.0729461052960722
AT3G63240_at 2.10184067183698 2.04997688680483 1.6325314059467 1.52001019135272 1.50280981251111 1.82363476405478 1.70231005639467 1.67625007181530 2.00552663705967 2.15819856449444 2.43374723606446 2.09183802707675 2.09967099458554 2.15488154017343 2.21151332816006 1.91618953367639 1.76301983996298 2.17650661175114 2.12800704648929 0.212456243151691 0.209093473043346 0.214337813863386 0.217840797699135 0.212065036282939 0.212018217323299 0.209093473043346 0.209093473043346 0.221692341857829 0.209176076772636 0.213456532859297 0.212642900047877 0.210733096189017 0.209093473043346 0.211637883898142 0.213171628522294 0.209093473043346 0.218072993726528 0.216838690555289 3 3|0 -|/ 23375408 23376129 23375698 23374857 23378567 - gene protein_coding_gene FALSE TRUE AT3G63240.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G32010.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G05470.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE87137.1); similar to putative inositol polyphosphate 5-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAO37964.1); similar to Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94102.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.127085535998205 -1.43202579648585 0.180230172246079 1 0.335034901914933 3.85275296839587 -0.127085535998205 0.059687215422527
AT1G18100_at 1.32817764660122 0.836070072785643 0.853608215169995 0.920202127198265 0.862474227849155 0.82622483732537 1.00809222254834 1.05895852320965 1.22941298813526 1.19120269674208 1.46241028400148 1.08891414435204 0.962771069639373 1.14571865640103 1.57515527830456 1.34107131767204 1.41201265570408 0.984671079260498 1.57214867822478 0.211925226068759 0.217620164658175 0.219055628940441 0.222564846395919 0.219955195609147 0.215967718835714 0.224030348338927 0.216245480024312 0.210461881927858 0.214870992595540 0.210461881927858 0.210461881927858 0.220031611480626 0.217154700203979 0.216268599270840 0.218413673854133 0.218984035671227 0.210461881927858 0.216852545752296 1 1|0 -|/ 6228045 6230029 6228956 6227210 6230181 - gene protein_coding_gene FALSE TRUE AT1G18100.1 E12A11; phosphatidylethanolamine binding E12A11 protein (E12A11) Identical to Protein MOTHER of FT and TF1 (MFT) [Arabidopsis Thaliana] (GB:Q9XFK7); similar to TFL1 (TERMINAL FLOWER 1), phosphatidylethanolamine binding [Arabidopsis thaliana] (TAIR:AT5G03840.1); similar to flowering locus T like protein [Populus nigra] (GB:BAD22677.1); contains InterPro domain Phosphatidylethanolamine-binding protein; (InterPro:IPR001858); contains InterPro domain PEBP; (InterPro:IPR008914) -0.138264079050501 -1.43188941254656 0.180268306854481 1 0.334870708459518 2.25048199160309 -0.138264079050501 0.0866148554078999
AT4G00520_at 4.15631443467964 4.29767946944419 4.18816385326646 4.02372948756773 4.99948946386573 4.56274841983175 5.85160130686178 5.6400769581389 3.09687122767230 4.25099798166314 4.05373761528715 3.82562934419407 4.32963727053877 4.28754062512755 3.84912978395799 3.91211265179470 4.48686224548441 4.03511736004827 4.16093813127886 0.198632516820832 0.193683747585757 0.194313597552465 0.200707265007098 0.191573221926567 0.197214404446452 0.195134796324916 0.191499691123206 0.202745644374665 0.196583714725349 0.197434756058582 0.19139898601684 0.193931809811106 0.196047436796308 0.195048189726713 0.19139898601684 0.195946281336453 0.192775205134333 0.198217469378914 4 4|0 +|/ 227878 231265 229568.5 227694 231699 + gene protein_coding_gene FALSE TRUE AT4G00520.2 acyl-CoA thioesterase similar to acyl-CoA thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G01710.1); similar to Os04g0558400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053533.1); similar to PREDICTED: similar to Peroxisomal acyl-coenzyme A thioester hydrolase 1 (Peroxisomal long-chain acyl-coA thioesterase 1) (HIV-Nef associated acyl coA thioesterase) (Thioesterase II) (hTE) (hACTEIII) (hACTE-III) (PTE-2) isoform 1 [Canis familiaris] (GB:XP_534440.1); similar to OSJNBa0065O17.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03486.2); contains InterPro domain Acyl-CoA thioesterase; (InterPro:IPR003703); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595) -0.140841743816098 -1.43178436349135 0.180297684513339 1 0.334744246255636 8.68184541200313 -0.140841743816098 0.0919811216508548
AT1G25450_at 4.63973971293917 5.03315890894583 3.29711404754741 3.3626149642232 4.76586402804301 4.53373730745195 3.61944956838272 4.13755550134083 5.74050012384026 4.4578918037225 6.9069581771222 6.72666408084905 5.5400443281878 6.31015365559929 6.24550466074944 4.81224435609652 3.93810299262335 5.22383318629564 4.90187840132791 0.252469412853883 0.250079825355811 0.264297780708642 0.266645108824148 0.246078128492195 0.253700714139 0.260185263598449 0.249326800583783 0.271365000259095 0.250703141321592 0.250766787543543 0.246155931356411 0.249470626601715 0.259448270693619 0.254322169051884 0.247617651947966 0.254614369183253 0.246818613925697 0.246078128492195 1 1 - 8938686 8939366 8938946.727 8938466 8940374 - gene protein_coding_gene FALSE TRUE AT1G25450.1 very-long-chain fatty acid condensing enzyme, putative Identical to 3-ketoacyl-CoA synthase 5 (EC 2.3.1.-) (KCS-5) (Very-long-chain fatty acid condensing enzyme 5) (VLCFA condensing enzyme 5) (KCS5) [Arabidopsis Thaliana] (GB:Q9C6L5;GB:Q84W57;GB:Q8L8L0); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to CUT1 (CUTICULAR 1), acyltransferase [Arabidopsis thaliana] (TAIR:AT1G68530.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93245.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.155935700320551 1.43152307793162 0.180370772346803 1 0.334429726771793 9.54683506618625 0.155935700320551 0.120068713720677
AT1G32375_at 1.55681412477898 1.72619931068674 2.03572574139457 1.90977792406931 1.46533061246732 1.6350324418646 1.64001149655142 1.88421143197241 1.99044676091420 1.94290910557372 1.53199461045748 1.11722141306229 1.73300164667325 1.52737572539801 1.80530610569853 1.44049007337010 1.67139724466710 2.14032761988552 1.87793844582349 0.184198402202713 0.196991395232277 0.182114328156944 0.184089585416245 0.18255235002918 0.183109526968582 0.184787847696393 0.182114328156944 0.190535256124990 0.182114328156944 0.182114328156944 0.182201780694616 0.188516101195482 0.189870483664519 0.195969387418076 0.182114328156944 0.188848370247936 0.191355056601004 0.185142169439658 1 1 + 11679922 11680626 11680294.909 11679210 11680659 + gene protein_coding_gene FALSE TRUE AT1G32375.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56390.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.128275605125352 -1.43146909066751 0.180385877010159 1 0.334364744919024 3.51063158997584 -0.128275605125352 0.0631083910168339
AT1G33520_at 7.44211697763517 7.3520026686916 7.40972924672066 7.26757327277987 7.78574109448104 7.24102048023353 7.11507127976638 7.32296966075804 7.4501684342998 7.34214076028399 7.01613117052365 7.03791974148726 6.94852704539669 7.04787859788621 7.0492197642026 7.18129131287208 6.71146475571718 6.83816883755679 7.38320709195189 0.155043360007579 0.164399505797285 0.159642452082096 0.164734341752547 0.168390318427113 0.160887525928852 0.158291292506076 0.164845243105112 0.164692277902896 0.169862448967277 0.159422540882524 0.155043360007579 0.162208197707088 0.160783517084712 0.165212763307534 0.157492726864613 0.162601373810254 0.160100434482911 0.161613930881882 1 1 - 12157496 12158001 12157689.909 12157136 12158933 - gene protein_coding_gene FALSE TRUE AT1G33520.1 MOS2 (MODIFIER OF SNC1, 2); RNA binding / nucleic acid binding / protein binding Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4; Identical to Protein MOS2 (MOS2) [Arabidopsis Thaliana] (GB:Q9C801); similar to KOW domain-containing protein / D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25020.1); similar to Os03g0253500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049580.1); similar to G-patch domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95011.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.147518866066139 -1.43145056190965 0.180391061269858 1 0.334342443122012 14.5523600428252 -0.147518866066139 0.105018831782221
AT1G14040_at 2.67439887240891 2.87633832832293 2.52011281359090 2.75764540235669 2.60522479659443 2.75147065068501 2.72599371544916 2.50795434147876 2.42395963921299 2.51822337969473 2.30139577941353 2.37655678573548 2.28942485626191 2.57082944529601 2.33189295661076 2.59660210100786 2.65497994195089 2.30537569667717 3.01714292665604 0.190161266592150 0.192189573298892 0.19751820665723 0.184686408749778 0.187726852877929 0.191540253336943 0.188666156592194 0.187210987946949 0.191870609113616 0.187225426430216 0.183730871466664 0.186775707048770 0.183157353624483 0.190881530140837 0.189029312404275 0.186598352615994 0.187748523758433 0.19394842015399 0.190443088444972 1 1 + 4813701 4814303 4814085.636 4810485 4814540 + gene protein_coding_gene FALSE TRUE AT1G14040.1 similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03260.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03250.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT2G03240.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.131142175880116 -1.43130075421786 0.180432981401229 1 0.334162136818908 5.21813778705608 -0.131142175880116 0.070535495824395
AT3G22300_at 5.46753097603857 5.45102676440305 5.13785987715037 5.16964524408535 4.66731478618446 4.78697350944164 5.79305182593724 5.32818044265128 5.01247722421897 4.67551219534498 4.54578951631024 4.9439902652024 4.79875322236051 4.64836198220084 5.78002852511326 5.04919610618119 5.1489572718528 4.93280872198204 4.36643395310071 0.210465204608521 0.212207371365313 0.211678981202551 0.211724895389230 0.209204250176037 0.217655731213341 0.209372999814987 0.209376724701423 0.213853596209584 0.207373718905058 0.208046984553805 0.210381509920212 0.2204192544292 0.211166388438204 0.218721028270249 0.207373718905058 0.210182159750556 0.213706047502238 0.214886115765884 3 3 + 7885891 7886581 7886252.182 7885675 7886827 + gene protein_coding_gene FALSE TRUE AT3G22300.1 RPS10 (RIBOSOMAL PROTEIN S10); structural constituent of ribosome Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10 Identical to 40S ribosomal protein S10, mitochondrial precursor (RPS10) [Arabidopsis Thaliana] (GB:P42797;GB:Q9LUW7); similar to DEAD box RNA helicase, putative (RH9) [Arabidopsis thaliana] (TAIR:AT3G22310.1); similar to ribosomal protein S10 [Oxalis regnellii] (GB:AAG32317.1); similar to ribosomal protein S10 - garden pea mitochondrion (GB:S55879); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848) -0.136660618764946 -1.43125798191421 0.180444951732359 1 0.334110658984774 10.0580946743808 -0.136660618764946 0.0833013884098985
AT1G08480_at 9.76052270762172 9.71408715623414 9.95913931659346 9.81541262743645 9.93893694901885 9.54855793723438 9.77761482422216 9.69103654628478 9.56905908407082 9.52037123285257 9.70493649138187 9.79101736020647 9.59576582480081 9.6852159507628 9.67446952437495 9.6347044873613 9.61567719902203 9.7325912845331 9.39243902091227 0.0947339645234022 0.0950279561000728 0.102362916891884 0.097251857100351 0.0957932208351524 0.103530301542303 0.100351858084473 0.0979531313426334 0.098690053732859 0.0945135617556218 0.0940537619817092 0.0942090891601725 0.0935659776885744 0.0978261698127545 0.093551901206322 0.0944385754137481 0.100425279491607 0.0947203748872123 0.0966792624246148 1 1|0 +|/ 2684344 2685372 2684962.7 2684237 2685624 + gene protein_coding_gene FALSE TRUE AT1G08480.1 similar to hypothetical protein 13 [Plantago major] (GB:CAJ34821.1) 0.132518609170142 1.43085631754296 0.180557395077675 1 0.333627292337763 19.3622903637061 0.132518609170142 0.0739705338927782
AT1G51805_at 11.4094164486683 11.5352188265578 11.4376403404191 11.3539853631818 11.5009679406588 11.2777507652456 11.7328549465166 11.6353800678048 12.0189000556641 11.9140095133344 12.0196521957021 11.8806560947350 11.8922410343340 12.0642718969663 11.2766049586031 11.9970663222488 11.5989973776622 11.6991274925700 11.6629497991521 0.0676187694174435 0.0674066664010328 0.0679042889419575 0.0695019426930397 0.0679477100375337 0.0716370194496188 0.0678076007470679 0.0719691554763294 0.080822574293658 0.0705092793796761 0.0675206379688785 0.0674066664010328 0.0674945969579121 0.0687731448442613 0.0702962489434346 0.0674066664010328 0.0725916353039412 0.0735290738298153 0.0675913777137613 1 1 - 19224862 19225537 19225089.909 19224646 19229358 - gene protein_coding_gene FALSE TRUE AT1G51805.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.123670377229040 -1.43083805255606 0.180562509654657 1 0.333605314199027 23.3198336512080 -0.123670377229040 0.049601117471641
AT3G46700_at 2.26084125315171 2.06723813988183 2.30697884901607 2.28854333277769 1.72627792133815 2.02129782040906 1.79518888399077 1.59048546680095 1.93951547722928 1.75578400858944 1.70686566671402 1.85481412730243 1.92832165133878 2.35400845873591 2.15755175418947 1.75023609693327 2.58255313593029 2.20185699245655 2.19093291670082 0.194646277968074 0.193836387850084 0.197477552372294 0.197953549069157 0.193836387850084 0.194747481850981 0.193836387850084 0.199774485178149 0.207736396651439 0.205192330647907 0.194092983207115 0.19859991390394 0.210814961381842 0.202251378265926 0.20222156227344 0.196647802340368 0.199712905228490 0.193836387850084 0.195141809669226 3 3 - 17211434 17211934 17211687.818 17211286 17212874 - gene protein_coding_gene FALSE TRUE AT3G46700.1 UDP-glycosyltransferase/ transferase, transferring glycosyl groups similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46680.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46690.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.131142281436253 1.43070917475879 0.180598601615154 1 0.333450241626447 4.02165818489908 0.131142281436253 0.0706695293103838
AT1G03475_at 8.75544130484489 8.69751271141078 8.4352441640331 8.45035187552802 8.58586019923249 8.22546760667171 8.46142202277949 8.16617065420323 8.3822660108521 8.05290999961595 8.29273846878339 8.78080245651913 8.4630401534883 8.44233268227661 8.8313080757565 8.41568158743748 8.40109733747898 8.65593445644791 8.06924934354633 0.123731636769631 0.122819879279804 0.135829739365281 0.126624342955959 0.121314648545618 0.128126923919216 0.119273056844951 0.127242239857072 0.128566795188013 0.124761885847744 0.123501934958280 0.119273056844951 0.119273056844951 0.122132376821769 0.1215052441089 0.123165885568096 0.136824326410504 0.121286495241491 0.119496822470096 1 1|0 -|/ 869466 870650 870020.625 869051 871212 - gene protein_coding_gene FALSE TRUE AT1G03475.1 LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase Encodes a protein (AtCPO-I) with coproporphyrinogen III oxidase activity. Identical to Coproporphyrinogen III oxidase, chloroplast precursor (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) (LESION INITIATION 2 protein) (CPX) [Arabidopsis Thaliana] (GB:Q9LR75;GB:Q546I5;GB:Q94JR5); similar to HEMF2, coproporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT4G03205.2); similar to Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase) (GB:P35055); contains InterPro domain Coproporphyrinogen III oxidase; (InterPro:IPR001260) 0.135659702829408 1.43036430834028 0.180695210826205 1 0.333035325238020 16.8239381608105 0.135659702829408 0.0812878405068895
AT4G30870_at 3.41917337999341 3.28755770252735 3.20768583974852 3.20068637314308 3.12357242612442 2.49819568313696 2.2643695253146 2.24156048316386 1.58152976678184 2.85429182083365 2.27594095747990 1.82286600609386 2.68792152095583 2.41800746712889 2.13689340977252 2.54829211013808 2.62590587131964 2.60370315469938 2.44427539846752 0.388971193977552 0.359824129675769 0.373509869786147 0.359824129675769 0.359824129675769 0.379268227242007 0.359824129675769 0.359824129675769 0.359824129675769 0.359824129675769 0.364324704510442 0.359824129675769 0.376949349776914 0.359824129675769 0.3737690958317 0.359824129675769 0.378893376043288 0.387366065360267 0.359824129675769 4 4|0 +|/ 15031978 15032191 15032115 15028592 15032467 + gene protein_coding_gene FALSE TRUE AT4G30870.1 ATMUS81; endonuclease/ nucleic acid binding Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant. similar to repair endonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G39770.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_454081.1); similar to Os01g0948100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045390.1); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132); contains InterPro domain ERCC4; (InterPro:IPR006166); contains InterPro domain DNA polymerase beta, N-terminal-like; (InterPro:IPR010996) 0.150472728979641 1.43024224548817 0.180729415420003 1 0.332888484466806 5.24700366375711 0.150472728979641 0.110672212440095
AT1G36100_at 1.12752415272503 1.13210200915097 1.30965102669938 1.44019527926450 1.09900308459136 1.51664397214931 1.36139795768894 1.07220029383453 1.74314551495313 1.92524201003084 1.21128608279215 1.23807774845817 1.24166738615054 1.24102189551530 1.84608392608123 1.35403314368421 1.73256375045309 1.32128750446721 1.87115792421927 0.199497276457238 0.196233476704733 0.199749971803695 0.200242484160182 0.200581622850394 0.199665985456669 0.199867716266547 0.20022105922371 0.201856828995822 0.203179595483226 0.196233476704733 0.203433489051623 0.200507202666583 0.202434028239824 0.200012387188801 0.201618956248571 0.202553958089546 0.205358214692475 0.206021569411223 1 1 + 13495875 13496389 13496131.182 13495864 13496427 + gene protein_coding_gene FALSE TRUE AT1G36100.1 myosin heavy chain-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT5G32590.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1) -0.140097616353952 -1.43024180179173 0.180729539763146 1 0.332887950718049 2.87972363673033 -0.140097616353952 0.0907707523540626
AT3G04690_at 1.35426346948355 1.13959383922253 1.42204342674302 1.37852292777130 1.00088715692983 1.57288806540753 1.09933104046812 1.26783742597348 1.49867505000222 1.14136164560482 1.33505833123095 1.44228572444306 1.7688800134995 1.61018673066371 1.73477307975266 1.61802860906876 1.63649480214766 1.63165315759317 1.63607307268308 0.215096260900171 0.202239575421327 0.203490411025918 0.20275694951238 0.204285115216928 0.198227043533051 0.205476632271659 0.204242605655871 0.208229957436367 0.204808232162987 0.198227043533051 0.205302783296008 0.202229635250891 0.198227043533051 0.198587076023336 0.200732979868793 0.198227043533051 0.208852702804173 0.200751774405863 3 3 - 1273439 1273911 1273658.727 1273392 1275944 - gene protein_coding_gene FALSE TRUE AT3G04690.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G51550.1); similar to Os05g0280700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055089.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD81103.1); similar to receptor protein kinase-like protein [Capsicum annuum] (GB:AAL40864.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.150064541856281 1.43023089016069 0.180732597702074 1 0.332874824504332 2.79069090840657 0.150064541856281 0.109934877032966
AT2G25910_at 8.69532781198313 8.46163735426564 8.62346227559574 8.42393446710526 8.71177737997702 8.50350671705676 8.1715213853342 8.0562903827438 7.84701307027845 8.19738112571667 7.8982692435913 7.96032606594314 7.98397281542426 8.22106060665581 7.87252443938827 7.81751816868901 8.20549969530686 8.02154408168258 7.82838780251578 0.153631987878847 0.152066861715211 0.148607858552611 0.155151021922644 0.148459861495097 0.152630424964531 0.152302743428544 0.159765545419374 0.165245131308783 0.156701683284631 0.15918990953107 0.148459861495097 0.160908326458952 0.156377766738084 0.159430365948242 0.148459861495097 0.161526403337660 0.155790414109493 0.161801479729489 2 0|2 /|- 11056809 11057311 11057147 11056133 11059144 - gene protein_coding_gene FALSE TRUE AT2G25910.1|AT2G25910.2 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein|3'-5' exonuclease/ nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25920.1); similar to 3'-5' exonuclease domain-containing protein-like [Solanum tuberosum] (GB:ABB86253.1); contains InterPro domain 3' (InterPro:IPR002562); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.129735683216766 1.43013598681630 0.180759195816942 1 0.332760662715279 16.4335239163021 0.129735683216766 0.0672640636989769
AT2G25180_at 7.19344649810661 6.94453326353116 6.65499199990408 6.89634749267159 7.74103287081324 7.68606747057371 7.76106995636186 7.84434840964761 6.56766687802676 6.73018017516172 7.00214220401623 7.24503411646657 7.51527335950402 6.92817390176662 7.07954078560789 7.07733061596438 6.89703046215473 6.89565880358321 6.60108616384116 0.163056733347817 0.169744992664735 0.172702605694600 0.173219461761001 0.162462428154537 0.172466841654655 0.168102832162033 0.163647849964871 0.174558312811222 0.168099775604836 0.164504914751813 0.173627865305447 0.163663607443234 0.177260077302157 0.166957862156465 0.164194646848174 0.178747658803456 0.161411609875459 0.166606856983564 2 2 - 10731850 10732249 10732048.818 10731380 10734040 - gene protein_coding_gene FALSE TRUE AT2G25180.1 ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-component response regulator ARR12 (ARR12) [Arabidopsis Thaliana] (GB:P62598); similar to ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT4G31920.1); similar to SRR391 [Striga asiatica] (GB:ABG35773.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.127902859350959 1.43007636440882 0.180775907606413 1 0.332688943859870 14.1967301302726 0.127902859350959 0.0624357552052619
AT1G30370_at 1.95406248557062 2.0668800553036 2.20672284133244 1.98546971006502 1.84444564806366 1.8371059691473 2.00090143222307 1.94451211154794 1.77570895555251 1.81341730527596 2.05145020093531 1.88587114671308 2.30880056566041 2.08863326468488 2.65999920813686 1.6241005085027 2.12444028560179 2.17742503743031 1.95465334833703 0.17721375427592 0.175757226290662 0.178219576673821 0.178344663738468 0.180484054539214 0.185187009763322 0.178811620731331 0.175274017211227 0.175225158040094 0.176574257216329 0.183593498087861 0.177001279871855 0.174751705057084 0.177413206729347 0.184920184691927 0.173908445799890 0.184126089297400 0.173985490714994 0.180261484570765 1 1 - 10719193 10719723 10719498 10719151 10720740 - gene protein_coding_gene FALSE TRUE AT1G30370.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06800.1); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.122005255905231 1.42985045318422 0.180839240999554 1 0.332417216620337 3.96152081345504 0.122005255905231 0.0440913868919178
AT2G33030_at 0.940225775589098 1.16280452778550 1.06510008254911 0.97151005498616 0.905676599538604 0.775475357336028 1.1481741421274 0.671505837675773 1.26106860394304 1.37497938501123 0.826629144999882 0.928616475106562 0.656506527027926 0.994594176045388 1.22817821596221 1.15806237433209 1.06979317700630 1.27239999869784 1.11380375245373 0.189028557155968 0.196484582042695 0.194869748327556 0.195528410778867 0.196466042363037 0.192169645401260 0.192059193145738 0.189028557155968 0.198937213389634 0.192463067394025 0.200685776365027 0.202458694144595 0.196395553384811 0.191448463067409 0.195422483335799 0.189592923453530 0.191150331989058 0.195197415834742 0.196570592952686 2 2 - 14024842 14025301 14025076.727 14024761 14025417 - gene protein_coding_gene FALSE TRUE AT2G33030.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25440.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.142170058257013 -1.42915346002726 0.181034759046464 1 0.331579047209291 2.08845809300676 -0.142170058257013 0.0951746263246328
AT1G66750_at 5.53274453019528 5.62421838940811 5.57966450396335 5.76108313683532 6.22959325517224 6.6040881685032 6.33410353682969 6.26714350870392 4.73986216494675 5.69801780684706 4.81002233538211 4.55615175959749 5.22451232870921 4.8963521535215 4.69880755040979 5.18223560238166 5.51883065928344 5.07976795664064 5.65729352972687 0.192289342597364 0.199642533923698 0.198115956906472 0.193262598588384 0.192306477345283 0.202774747004339 0.189285359743486 0.199584562885393 0.209387178788921 0.195591822180726 0.190314884376082 0.192713411562713 0.195516585586865 0.201161283650066 0.195744884677354 0.190773695429809 0.20793181040299 0.194966758100467 0.19481331608592 1 1|0 +|/ 24900009 24900622 24900334.222 24898378 24900916 + gene protein_coding_gene FALSE TRUE AT1G66750.1 AT;CDKD;2/CAK4AT/CDKD1;2/CDKD;2 (CYCLIN-DEPENDENT KINASE D1;2); kinase/ protein binding / protein serine/threonine kinase similar to AT,CDKD,1/CAK3AT/CDKD1,1 (CYCLIN-DEPENDENT KINASE D1,1), kinase [Arabidopsis thaliana] (TAIR:AT1G73690.1); similar to CDK-activating kinase [Medicago sativa subsp. x varia] (GB:AAK97227.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.132584007882610 -1.42853571929970 0.181208195215078 1 0.330836407322606 11.1720263172419 -0.132584007882610 0.0746365871905635
AT1G34470_at 6.51480684292018 6.65010972422149 6.43456410964095 6.31974659775164 7.24877717492716 7.00433414341755 6.89654733567407 6.70873913496219 6.20035682413722 6.61131476785932 6.20454359432038 6.19410814256782 6.42806345750071 6.23122322338284 5.61969113070851 6.12176047080844 6.25903835312467 5.82632772562042 6.46251360985527 0.221469474694981 0.215091876263769 0.216506321439082 0.213240727751176 0.208910107871926 0.217682997399982 0.210196902311290 0.218373964252574 0.227560678097147 0.210921927205338 0.213818081670167 0.210594806348117 0.208910107871926 0.221182096029272 0.217784996206710 0.221086007158440 0.217450361018157 0.213510439165895 0.211795021787411 1 1|0 +|/ 12605828 12606674 12606241.111 12604278 12607011 + gene protein_coding_gene FALSE TRUE AT1G34470.1 permease-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09640.1); similar to Os01g0882300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045007.1); similar to Non-imprinted in Prader-Willi/Angelman syndrome re (GB:ABA91886.2); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) -0.127414570686600 -1.42821111648653 0.181299386743198 1 0.330446258619939 12.9898645893752 -0.127414570686600 0.0615535386092056
AT2G36400_at 3.37881377823053 2.85822654974105 2.33988597335442 2.48243339808079 3.68536567684414 2.78927311539858 1.67583481051708 1.59886710414192 2.61518634905275 2.46961669656232 2.39453935123708 2.80436702095204 2.47398521976918 2.70110260041486 2.41091952540724 2.16413798274289 2.35235677716027 1.93032977255951 2.29486440776339 0.235528904098326 0.230642887462343 0.229513465080997 0.2358033421806 0.235116228335650 0.237072814963384 0.236935831284058 0.235912053990929 0.24100606215919 0.238696719618159 0.230301289014993 0.232953749339638 0.231258615895957 0.229513465080997 0.234253968736279 0.234961052342608 0.237547539579276 0.238754651835277 0.235075046395834 2 2 - 15277379 15278716 15277796.273 15277167 15279902 - gene protein_coding_gene FALSE TRUE AT2G36400.1 AtGRF3 (GROWTH-REGULATING FACTOR 3) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower. similar to AtGRF4 (GROWTH-REGULATING FACTOR 4) [Arabidopsis thaliana] (TAIR:AT3G52910.1); similar to growth-regulating factor 1 [Oryza sativa] (GB:AAF17567.1); similar to Os02g0776900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048288.1) 0.195191055208038 1.42819057626129 0.181305158471026 1 0.330421572741156 5.03301576699183 0.195191055208038 0.181520792531389
AT3G57240_at 9.27320471783888 9.36812271795703 6.61884440700134 6.33127786909278 5.66646709583577 5.58136416218919 2.75676805232456 2.69132598711858 7.32889296398046 2.73893693272185 3.40673805991183 5.68374604404764 3.29362509899587 4.29190036847215 3.70082735793031 3.68175782154417 2.9717935606962 4.79907020372468 2.70165327935040 0.330850525894363 0.329116478065122 0.334606567827703 0.328514265331292 0.321164888495379 0.332690706234607 0.332305040873617 0.345061328203673 0.334018353924339 0.339846381828444 0.318491510845398 0.324175386340532 0.326612771085216 0.325468692625994 0.315624115732756 0.315624115732756 0.323530885591203 0.322779235209985 0.334923624264273 3 3 - 21192924 21193448 21193273.091 21192721 21194053 - gene protein_coding_gene FALSE TRUE AT3G57240.1 BG3 (BETA-1,3-GLUCANASE 3); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 17 similar to BGL2 (PATHOGENESIS-RELATED PROTEIN 2), glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57260.1); similar to beta-1,3-glucanase (GB:AAA32756.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.125339531441102 -1.42813941379061 0.181319535614211 1 0.330360085114339 10.1535102293862 -0.125339531441102 0.0556012310493841
AT3G20510_at 7.72391542078679 7.50150313441532 7.33823173174969 7.35420424944439 5.9116437546333 5.78725285030947 6.12560729915038 6.29723317907665 6.18350755530443 4.90946853674212 6.23446792397855 6.75163034081842 5.18027967233659 6.13423750040057 6.41171253171101 5.26180807689701 4.81660342700059 7.19495973980005 5.21169929431688 0.260076406207135 0.252587625624950 0.256377050014499 0.245437458839007 0.247706997560039 0.253877482863204 0.243179521359573 0.248639273887125 0.272449020381064 0.249822847711729 0.243179521359573 0.243179521359573 0.262775288732372 0.251080858643661 0.244747548195427 0.251067460329404 0.261108295211735 0.243179521359573 0.243321162665745 3 3|0 +|/ 7160891 7161925 7161329.889 7160683 7162195 + gene protein_coding_gene FALSE TRUE AT3G20510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50740.1); similar to hypothetical protein 11 [Plantago major] (GB:CAJ34819.1); similar to Os03g0584300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050565.1); similar to Os03g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050510.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.124544497170148 1.42786094676253 0.181397804448710 1 0.330025445735496 12.4715010509819 0.124544497170148 0.0532409321108108
AT1G20340_at 13.6335159696397 13.8644389618899 13.5666392252898 13.6189378693839 13.5587256539966 13.4854328547631 14.1071972767434 14.3148149660112 14.5646822079009 14.5962004802357 14.8255868370041 14.8476728502036 14.7557046086034 14.7259858567878 14.7671286956694 14.6494553853740 14.3105661401630 14.7137448469693 14.4222254497155 0.063720684947324 0.0583753545224092 0.0634911762474393 0.0636724131388762 0.0583753545224092 0.0659579638884226 0.0602497376064819 0.0589968161047829 0.0645852484672364 0.0583753545224092 0.0607799805207016 0.0594750890881325 0.0594781234166794 0.0599578751860236 0.0593042491098717 0.0590565933399489 0.0696406715139879 0.0597536032803646 0.0593084438732732 1 1 - 7042792 7043200 7042976.727 7042419 7043353 - gene protein_coding_gene FALSE TRUE AT1G20340.1 DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier recombination and DNA-damage resistance protein (DRT112) Identical to Plastocyanin major isoform, chloroplast precursor (DNA-damage- repair/toleration protein DRT112) (DRT112) [Arabidopsis Thaliana] (GB:P42699;GB:Q9LN26); similar to plastocyanin [Arabidopsis thaliana] (TAIR:AT1G76100.1); similar to DRT112 (GB:AAA32787.1); contains InterPro domain Plastocyanin; (InterPro:IPR002387); contains InterPro domain Blue (type 1) copper protein; (InterPro:IPR001235); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Blue (type 1) copper subtype; (InterPro:IPR011572) -0.125389976366626 -1.42738016097729 0.181533006470838 1 0.329447776890253 28.3823045298218 -0.125389976366626 0.0559524871022195
AT1G20490_at 1.82158083557864 1.94476559479292 1.90147352828155 1.50385014146568 1.76169250874278 1.51914875202985 1.92704285488509 1.91924810274006 1.43542858727816 1.84916298240003 1.72001571764324 1.83744728461406 1.95894424359173 1.61280249477085 1.83060473395270 1.80180282644366 1.72584369848374 1.71949820734113 2.16608544070011 0.196305587380578 0.194572225185905 0.194766421014395 0.20491553637872 0.195337441270358 0.200928358017437 0.196064110809027 0.191066793005916 0.198216842081628 0.192654255589743 0.195082014918868 0.193480720134528 0.193963893419856 0.201189761970092 0.195984741873094 0.192078167807487 0.204535908606593 0.198538179547943 0.196801331157112 1 1|0 -|/ 7097403 7098587 7098027.222 7097283 7099685 - gene protein_coding_gene FALSE TRUE AT1G20490.1 AMP-dependent synthetase and ligase family protein similar to 4-coumarate--CoA ligase family / 4-coumaroyl-CoA synthase family [Arabidopsis thaliana] (TAIR:AT1G20500.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE87408.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.13632027515342 -1.42729652335211 0.181556534966439 1 0.329347298528563 3.58373140863852 -0.13632027515342 0.0833841723990168
AT1G64980_at 5.90802985513274 6.46358709035026 5.71466121402365 5.8628768799118 7.16072461305616 6.80553806525438 8.24777120876563 8.4427286366811 8.09136618200385 8.20851171273826 8.70915651212085 8.91246768379528 9.50418771533609 9.12556436059488 8.34636957995868 9.02745763035904 8.62094641654596 7.99602739443416 8.34082365800005 0.191685626858366 0.188619628210289 0.201465377925696 0.195588395575261 0.189721268951501 0.185133371538131 0.187185759451591 0.183311920541665 0.192822637821813 0.187825151197089 0.189184937082066 0.184020200933335 0.190515125789421 0.190510101583497 0.186702712872585 0.185740109275873 0.183161440071579 0.181488925982407 0.183279603852596 1 1 - 24141558 24142033 24141805.273 24141180 24142939 - gene protein_coding_gene FALSE TRUE AT1G64980.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90022.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448) -0.1564370136376 -1.42728545339931 0.181559649300762 1 0.329333999891221 15.3226593683422 -0.1564370136376 0.121727394462436
AT3G61990_at 4.48357017072931 3.56900889404059 2.82344675814982 3.37671423678423 3.24924548991926 3.12555002908438 3.168889279632 2.81846020672439 2.30167550127292 2.6782180842942 2.18535814240257 2.42270125775488 2.22897933721094 2.79226433127883 2.26195153326050 2.55219370676943 2.70555321639783 2.24334689344511 2.42415209150557 0.208131147297751 0.202741789899228 0.211066654597741 0.205615243345523 0.196692547004368 0.209120251504193 0.216896281617796 0.197692076258147 0.19796154212829 0.200046591826397 0.199957726122049 0.196874513728575 0.195416703987842 0.200846302257291 0.200761218822343 0.206524432004096 0.196038331216655 0.209589999320860 0.200410969854234 3 3|0 -|/ 22968296 22969329 22969001 22968029 22969970 - gene protein_coding_gene FALSE TRUE AT3G61990.1 O-methyltransferase family 3 protein similar to O-methyltransferase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G62000.1); similar to Os08g0154000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061012.1); similar to O-methyltransferase [Nostoc sp. PCC 7120] (GB:NP_489219.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) -0.205107341336518 -1.42681202020884 0.181692883669288 1 0.328765315151645 5.77289002213595 -0.205107341336518 0.195837051205077
AT2G34360_at 1.18876417453459 1.02935476242128 1.74742667821697 1.69409257008927 1.37274081740330 1.39485110112476 1.40899884427741 1.46386652991781 1.55235784910241 1.03635974975525 1.06982274635397 0.874353298025316 1.16682192617610 0.923484106286028 0.959374418559795 1.32139082410055 1.29699407532003 0.954832021935107 0.750609378776562 0.182046404779922 0.185901401759944 0.189114021010794 0.186382698598257 0.181682599573137 0.190535893318218 0.185570255989252 0.182617017259858 0.192342017534622 0.194086105262598 0.187595320428579 0.181682599573137 0.187988913930408 0.189686764602835 0.181682599573137 0.182550318758285 0.191935149795103 0.185448056200725 0.187201129518019 2 2|0 +|/ 14516081 14517064 14516496.125 14514373 14517138 + gene protein_coding_gene FALSE TRUE AT2G34360.1 MATE efflux family protein similar to MATE efflux protein-related [Arabidopsis thaliana] (TAIR:AT5G52450.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G73700.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93464.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65963.1); similar to Os06g0494400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057687.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.118653449235337 1.42679816605159 0.181696783776551 1 0.328748675501387 2.50450851956785 0.118653449235337 0.0308383291141168
AT4G36700_at 1.16404786851740 1.40459062554214 0.992226206341568 1.00681694897374 1.05929743316652 1.00443463557003 1.47960565468497 1.10673486459041 0.889818821061423 0.642061367610147 0.67576965840508 0.755492376495982 1.05911423502083 1.13188983522889 0.798040974122718 1.17598372869644 1.09731400710063 1.04910664940779 1.35394531553496 0.213184961049029 0.215711876567010 0.21319303679582 0.216799948805032 0.213947498200280 0.214523331914892 0.217112426621641 0.213877129488117 0.215781194790633 0.228018277978672 0.220177887123965 0.212771017772143 0.223912801174148 0.217134370602722 0.216434305196725 0.212771017772143 0.218781485791134 0.217246250747972 0.218427219920930 4 4 - 17298481 17298997 17298813.364 17298204 17300371 - gene protein_coding_gene FALSE TRUE AT4G36700.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to preproMP73 [Cucurbita maxima] (GB:BAB78478.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113) -0.133576924498242 -1.42643328130364 0.181799528630899 1 0.328310465933958 2.117109663571 -0.133576924498242 0.0774148893295653
AT3G51890_at 9.07544772210324 9.16584338914112 9.40313269693818 9.46951314804717 9.00851149881216 9.0280065140152 8.08613920684743 7.86327818088447 8.68603589030382 8.19812835139686 7.87863696432961 7.90457900500889 7.81346214129819 7.79167050309801 7.47990555934735 8.11727289840837 8.26197470768711 8.30194350745928 8.2567432454817 0.148960772687425 0.147650391543595 0.151884053824841 0.148677887778387 0.148234581090400 0.152660644368375 0.152482537322008 0.151260470129050 0.150672933549323 0.154175378646382 0.153629285377033 0.157138788562639 0.165271400105652 0.149734038792191 0.159424262778866 0.146257500436785 0.152322416914534 0.157472326031967 0.146279265435967 3 3 - 19260701 19261638 19261006.455 19260457 19261952 - gene protein_coding_gene FALSE TRUE AT3G51890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83515.1); contains InterPro domain Clathrin light chain; (InterPro:IPR000996) 0.121496002405627 1.42635336836345 0.181822037217194 1 0.328214504066336 17.0494756228771 0.121496002405627 0.043306850410953
AT3G11400_at 8.92344672560673 9.03944801756352 8.84449059094285 8.86240535275124 8.88797305376117 8.86669921051319 8.83536122573483 9.04890855752882 8.49778527256552 8.32720077472182 8.13439317727903 8.34085604129653 8.43089244713632 8.10913156749703 8.72990575439138 8.14505478796535 7.95799470697169 8.07756820403968 8.33531944498898 0.120602674802228 0.126032740961189 0.125940532937985 0.123330986280661 0.126196193542303 0.126147549712893 0.121900375854329 0.121042068913362 0.125916576716232 0.124549382547818 0.123586885966259 0.121309882223785 0.121807714392498 0.121136804618499 0.126398334618862 0.118788287607605 0.140766486941844 0.128512774271849 0.123560434250895 3 3|0 +|/ 3578844 3580346 3579952.2 3578394 3580575 + gene protein_coding_gene FALSE TRUE AT3G11400.1 EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). similar to EIF3G2 (eukaryotic translation initiation factor 3G2), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G06000.1); similar to RNA-binding re (GB:ABE81433.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.121221495609837 -1.42615538174924 0.181877813056847 1 0.327976771016814 17.2273381334241 -0.121221495609837 0.042330273658564
AT2G31460_at 1.32082209384441 1.43001957003083 1.23096563202062 1.45045548265491 1.48918389833211 1.52661977978247 1.06194013475893 1.30484188064038 1.15472676791252 1.37041622383900 1.65381630601883 1.59920100671938 1.28870271049991 1.76113770928475 1.39300226099138 1.68629872346634 0.772300332852191 1.67267118587931 1.58456089531247 0.205863504749572 0.217412759377248 0.217189899615568 0.217846638367473 0.209367415216668 0.214416560235251 0.209540213988003 0.206104505953166 0.209184782172059 0.205224384038067 0.213557249886208 0.214156776081012 0.211177125818314 0.217345691138764 0.208274404685271 0.208881249644004 0.215049134118123 0.212903948148149 0.213465723635994 2 2 + 13412074 13412551 13412334.455 13411853 13412587 + gene protein_coding_gene FALSE TRUE AT2G31460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27410.1); similar to Protein of unknown function DUF313 [Medicago truncatula] (GB:ABE88646.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Protein of unknown function DUF313; (InterPro:IPR005508) 0.126695131077451 1.42608856968411 0.181896638301280 1 0.327896551122112 2.77600234658409 0.126695131077451 0.0600733004327547
AT3G19120_at 3.62801889249240 4.00580300090209 3.23497370754356 3.4783122228209 4.00774802502693 3.84379191241954 3.44127603218660 3.82729179761218 4.06088103499652 3.74853533588765 3.3384460414023 3.75346293748885 3.88501399613123 3.62657193236187 3.58359941575641 3.57693274305791 3.44659230054963 3.53468070037442 3.60291867519633 0.204128149585867 0.209359030180199 0.215575388758713 0.21042585888902 0.207569919200352 0.207472763903045 0.209329755883422 0.204128149585867 0.213596327528651 0.211547892631104 0.205991193882766 0.204128149585867 0.205406940190367 0.208608183867213 0.212284197418867 0.206153373055257 0.215433646335847 0.213597502396406 0.209048160664826 3 3 - 6609685 6610259 6609980 6609418 6611065 - gene protein_coding_gene FALSE TRUE AT3G19120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12010.1); similar to PREDICTED: similar to Kruppel-like factor 7 (ubiquitous) [Danio rerio] (GB:XP_696516.1) -0.147670068741046 -1.42587516450770 0.181956779282105 1 0.327640336418418 7.3820390440841 -0.147670068741046 0.106372218939252
AT1G31050_at 2.18167899533857 2.41991925052475 2.42952737165644 2.6135026564556 2.21747982123147 2.43993500716617 2.56346521069289 2.9875871217721 2.86988672183222 3.25810962532889 2.4327782385266 2.71624584748430 2.83128150254752 2.93169436062344 2.72060476829042 2.69746905650291 2.75020762737029 3.19579198425119 2.74567750770506 0.197124206792451 0.197322544617222 0.192081673185201 0.189815111256397 0.184925027415104 0.199137641411860 0.188425319626115 0.190217862096598 0.188762527732597 0.198378404579869 0.190065956639167 0.19071364805742 0.197891866577183 0.188074487046446 0.189487546296491 0.19318480291671 0.191156037775657 0.208201288779645 0.191052800279647 1 1|0 -|/ 11075701 11075982 11075780.3 11075608 11076180 - gene protein_coding_gene FALSE TRUE AT1G31050.1 transcription factor similar to Os07g0471900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059610.1); similar to bHLH transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06965.1) -0.143216771105231 -1.42585831265037 0.181961529121458 1 0.327620105118563 5.35283715843224 -0.143216771105231 0.0978900696528612
AT1G74950_at 8.3559438860395 8.55129779195163 7.99072520272614 7.8726332009109 8.118644104242 7.87765849662904 7.21313605644604 7.17648825835804 6.20743833798847 5.9022698152685 5.54324804907857 4.96698138647623 5.43020045062278 5.31873499673386 5.05300662679905 6.06345908941999 5.54110620676209 5.77095533874531 5.4504008442971 0.232942593551014 0.238834124213922 0.239469426302068 0.240216456268613 0.230750582589043 0.233600225393679 0.23464554180766 0.241160672607812 0.235281778596301 0.241746827780137 0.233111578545053 0.235282093250175 0.237419682249991 0.236679743661796 0.243543331976340 0.229897919811098 0.254666830627432 0.241495186017505 0.238402045303146 1 1|0 -|/ 28152586 28153426 28152994.7 28152236 28154105 - gene protein_coding_gene FALSE TRUE AT1G74950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399) -0.125854697421705 -1.42558152746213 0.182039558407955 1 0.32728783643439 13.5517314666285 -0.125854697421705 0.0577924836235032
AT4G03370_at 1.75837961525859 1.64314354767769 2.00621449426685 2.00893390341614 1.64206725513671 2.30569034655478 1.42761346483257 1.78971316773569 1.94522539214734 1.92716299919047 2.11269595433295 1.71032959272822 1.97975539226755 1.61188755320053 1.93342798500059 1.66947269567047 1.99325896640572 1.97306016646817 1.77936588355439 0.216506387681126 0.212737876698147 0.222536448440893 0.226118891009671 0.219127515781715 0.219192427184515 0.214424455009124 0.211883088394333 0.225408228831812 0.213290036201113 0.215704047172437 0.213056349257878 0.223208990891545 0.213413477436217 0.218882177240541 0.211612276329197 0.224495172728636 0.224443690392857 0.212757352369834 4 4 - 1478093 1478628 1478397 1478077 1478964 - gene protein_coding_gene FALSE TRUE AT4G03370.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G03360.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.162540998798015 1.42534785735930 0.182105455056211 1 0.327007358621724 3.70117153930488 0.162540998798015 0.132338574139043
AT1G03350_at 8.22313054072133 8.38693847197706 8.53362668788475 8.45498095357594 8.5860324206273 8.63439455826826 8.3561080264271 8.41804829708765 8.55467228668798 8.40555340872918 8.57858042590146 8.57233538161149 8.56182485871884 8.53469610348642 8.40963504191883 8.55308271862621 8.47935740858217 8.33276765089507 8.45135309918202 0.097009808351376 0.0967938045674117 0.0954872527408362 0.101058244644936 0.0988369874456172 0.0957431682470307 0.105305672938819 0.100348696210700 0.100527640806707 0.099893149660837 0.0994117544003135 0.0965286383948637 0.0991919797513435 0.096226788203516 0.104193540561994 0.0958919547692826 0.101536979992044 0.103468747469532 0.100778606795855 1 1 - 822906 823372 823078.091 822638 824393 - gene protein_coding_gene FALSE TRUE AT1G03350.1 BSD domain-containing protein similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G13110.1); similar to PREDICTED: similar to Bsdc1 protein, partial [Strongylocentrotus purpuratus] (GB:XP_787471.2); similar to PREDICTED: similar to Bsdc1 protein [Strongylocentrotus purpuratus] (GB:XP_001192532.1); similar to Os07g0647400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060469.1); contains InterPro domain BSD; (InterPro:IPR005607) 0.119230502443478 1.42532315675709 0.182112421983815 1 0.326977711879287 16.9358131013631 0.119230502443478 0.0342603146941774
AT1G48610_at 4.10099255964846 3.58142830670858 3.30910708255101 3.2230334920123 3.43125706530096 3.50724304950964 3.51301912693934 4.29652583119651 4.2454818047442 3.46514001411489 3.88709209867368 3.93136732683341 3.63710544015683 4.12031964038651 4.61118705832308 3.72990111880759 3.60213871665852 3.79662761898978 3.61333981254624 0.161770401230964 0.161795584435944 0.168142371206469 0.171684063372201 0.163283314768909 0.180062631141268 0.165015641988620 0.159513193007142 0.167554206580575 0.160630773896180 0.159846297023229 0.166413833769347 0.168139466016066 0.169141656073191 0.162262651355877 0.162106408070873 0.162172832451949 0.160589641197987 0.161726001134932 1 1 - 17975066 17976390 17976126 17974346 17976971 - gene protein_coding_gene FALSE TRUE AT1G48610.1|AT1G48610.2 AT hook motif-containing protein similar to HON4, DNA binding [Arabidopsis thaliana] (TAIR:AT3G18035.1); similar to DNA binding protein [Brassica rapa] (GB:ABK78696.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.182758891780588 -1.42530870066080 0.182116499502308 1 0.326960361197613 7.46488644147774 -0.182758891780588 0.163901341206545
AT3G10990_at 2.23860518491163 2.41764586641876 2.32691564296074 2.67197303542338 2.09859798233112 2.5681599292785 2.16160605866085 2.05486759753742 1.90818201348674 2.0598237447412 1.87842725325887 2.06868422465619 1.67177375534270 2.02375070387706 2.51025933507063 2.32569502711216 2.07667066043863 1.85216989237087 1.89148847781361 0.207520759887508 0.207098391688662 0.206265151839943 0.206265151839943 0.214093271584 0.215626542314878 0.222117327464566 0.211159234134756 0.213681253831882 0.212016024499334 0.210489404641056 0.207089916817266 0.209566257004354 0.206265151839943 0.207013169275517 0.207850115212592 0.213570222294718 0.209974885659494 0.208869691654341 3 3 - 3446529 3446972 3446738.909 3446468 3447001 - gene protein_coding_gene FALSE TRUE AT3G10990.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23960.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain F-box associated type 3; (InterPro:IPR013187) 0.147997290892489 1.42525266633454 0.182132305398879 1 0.32689310805383 4.31934321312184 0.147997290892489 0.107098565444263
AT2G36145_at 7.57583693552658 8.05497822691002 6.86375058531729 7.19203031092505 7.01813224345751 7.33513505151781 8.1408255126423 8.65927635990136 6.77267145691633 8.2027422373216 8.38606420007254 8.93876178062695 8.69948364984693 9.03715036418396 9.17785143729823 9.62608660991478 8.99159519264025 8.93132942918102 7.90494442918364 0.177136783298863 0.173697360941500 0.178124513214293 0.175641019129810 0.172269922835403 0.179041580683016 0.174427129887330 0.176727490425463 0.204995127087508 0.174703412253211 0.174111403657204 0.169042911599487 0.173676853017107 0.171268563633249 0.173437681974055 0.175284556983217 0.188372390568209 0.172482773691425 0.170717192358348 2 2|0 +|/ 15175697 15176398 15175978.222 15175620 15176585 + gene protein_coding_gene FALSE TRUE AT2G36145.1 similar to Os01g0862200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044880.1) 0.170643540444703 1.42473174707969 0.182279299425618 1 0.326267977198337 15.9051588403303 0.170643540444703 0.145471567883536
AT2G20170_at 2.2680608841394 2.10104374462388 2.11573568594999 2.18642416738877 2.01799918722765 2.25908101162718 2.13494243270722 2.34698278779717 2.20716559607129 2.08597859146675 2.21879477170662 2.21973857790964 2.23926728037893 2.45300176490969 2.97844904147945 2.44848474779165 2.40974843758054 2.48640007903217 2.03069744262423 0.164114152970199 0.164039064286062 0.159115660376680 0.165282870892125 0.159978112383318 0.163136507881428 0.162104057151723 0.161057232462963 0.16347731988459 0.160052958798502 0.162897017962803 0.159025202802282 0.166148832534039 0.163359634168311 0.168172154313059 0.162307346184933 0.166156608391047 0.164132893468828 0.167566849957581 2 0|2 /|+ 8709648 8710450 8710092.111 8708094 8710476 + gene protein_coding_gene FALSE TRUE AT2G20170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23390.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) 0.12792046413799 1.42459237765555 0.182318643992521 1 0.326100751995417 4.44862513650900 0.12792046413799 0.0638131052501346
AT4G38570_at 5.62723625322273 5.65884055362502 5.54111686572145 5.31486993372269 6.45373905193403 5.97008331203867 5.55847193920685 5.5160754499616 5.62305271525083 6.06106848754637 6.00671390846502 6.13152230524332 6.01162430047783 5.89797327360905 5.9483608823453 6.30593844670855 5.44156462601799 5.66416673333717 5.939875748782 0.192027037316235 0.194446930709608 0.191433336964819 0.193081650072187 0.201963292329495 0.198710119341967 0.194528502656819 0.201168333688323 0.212536183336351 0.204920425402942 0.193718616704079 0.199852639617219 0.191148493578966 0.199544082843432 0.208060592496974 0.193836413689899 0.221095255488764 0.201195298622108 0.195972003401895 4 4|0 -|/ 18031446 18032870 18032064.222 18031273 18033557 - gene protein_coding_gene FALSE TRUE AT4G38570.1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase, putative / phosphatidylinositol synthase, putative Identical to Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (EC 2.7.8.11) (Phosphatidylinositol synthase 2) (PtdIns synthase 2) (PI synthase 2) (AtPIS2) (PIS2) [Arabidopsis Thaliana] (GB:Q8GUK6;GB:Q9SZN6); similar to ATPIS1 (Arabidopsis thaliana phosphatidylinositol synthase 1), CDP-diacylglycerol-inositol 3-phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT1G68000.1); similar to phosphatidylinositol synthase [Brassica napus] (GB:AAM77369.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.140556825424644 1.42451956296729 0.182339202740498 1 0.326013388116394 11.6053785249551 0.140556825424644 0.0928558568116615
AT3G20130_at 1.60808627671681 1.34800153765606 0.898920010862278 1.45572516380778 1.22403371810966 1.03394053197848 1.26386657300065 1.10132223711616 1.43067195881655 1.99389102307245 1.73414798536153 1.85852970942841 1.63300895666734 1.61045821211661 1.49640232638415 1.44979980137409 1.40503410601453 1.82248333419838 1.83570187639331 0.199857072779732 0.200505050347865 0.198663608070895 0.198558328459340 0.195261591261601 0.202636029701053 0.198726187102333 0.199367921217204 0.196935557614350 0.201000805144467 0.195404610448087 0.198788645421118 0.202639010806524 0.202351249223579 0.199119220759383 0.197329477184900 0.208078141519925 0.195263377930615 0.212976508428967 3 3 + 7028148 7028594 7028380.818 7026935 7028842 + gene protein_coding_gene FALSE TRUE AT3G20130.1|AT3G20130.2 CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22); oxygen binding|CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22) member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A30 (cytochrome P450, family 705, subfamily A, polypeptide 30), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20940.1); similar to CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20100.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.152176432708589 -1.42447184631006 0.18235267628905 1 0.325956138732333 2.93156434284127 -0.152176432708589 0.114821753838841
AT1G06970_at 1.40229514298017 1.67631750457188 1.30079462374131 1.37193977056509 1.31708608138287 1.44316677720974 1.50833300840141 1.19050096843715 1.43026869062855 1.57573572615984 1.72113782552663 1.08281491541060 1.21498701428491 1.49907252141817 1.51071411444253 0.992439166060793 2.00651245948557 0.893920436256461 1.63000979820167 0.191404734100082 0.198353160671931 0.187533290933792 0.190824202705398 0.193396870084477 0.189142172298442 0.187533290933792 0.193065273581451 0.195646615242965 0.192564234698333 0.187533290933792 0.190826735974914 0.190583901604108 0.201321377059674 0.189525969537415 0.188684830919832 0.188644410375447 0.190771774569586 0.196695311211548 1 1 + 2140219 2140741 2140431.182 2138108 2140817 + gene protein_coding_gene FALSE TRUE AT1G06970.1 ATCHX14 (cation/hydrogen exchanger 14); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX13 (cation/H+ exchanger 13), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT2G30240.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84887.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.133126553962772 -1.42435601370226 0.182385386953807 1 0.325817170603389 2.85657317379823 -0.133126553962772 0.0768221276793558
AT2G42720_at 1.29358604772254 0.983945949644215 0.68672721867538 1.33734677271866 1.25241476220555 1.00662723371697 0.772263020946572 1.57102652324323 1.39764678697263 1.48497983142034 0.641451186720893 1.18968574732968 1.17062427384395 1.14629629963492 0.901131514568891 1.04363914010251 1.18310396785137 0.801408879039475 1.10027204200866 0.219348121029018 0.218248688481937 0.218248688481937 0.223050155638952 0.225817651913206 0.223927286354835 0.218248688481937 0.219965404458900 0.225957966891762 0.232718509652128 0.219354901888335 0.222052716369588 0.229134999877979 0.220804811338262 0.223849819463782 0.225932296133411 0.224546973769894 0.220803573765429 0.225713190535001 2 2 + 17793543 17794204 17793940.556 17792486 17794497 + gene protein_coding_gene FALSE TRUE AT2G42720.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42730.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92026.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.201195824612043 -1.42370205103925 0.182570156590079 1 0.325032730174153 2.28164244757764 -0.201195824612043 0.190958386857694
AT4G07960_at 1.35456165900352 1.32919303745946 1.01182847638886 1.30131740342014 1.19807014728464 1.474273977659 1.47597408013916 1.06969921736820 1.88750230792369 1.57429866469844 1.10668899299257 1.29473688521801 1.50630319067327 1.13300975372468 1.69190374202210 1.21206929013098 1.56788102229951 1.62879897310163 1.39376350972331 0.212500628238709 0.212879521819403 0.21406866950717 0.230995543811402 0.216366500548221 0.207607545142348 0.209985777647129 0.215367366972603 0.213435534823633 0.221735939226378 0.210288298772710 0.216072648717092 0.217368185508941 0.217451659266707 0.208206484773262 0.220615763250315 0.210013347165615 0.207895478682813 0.219818206726272 4 4 - 4802654 4803177 4802937.909 4802338 4805644 - gene protein_coding_gene FALSE TRUE AT4G07960.1 ATCSLC12 (Cellulose synthase-like C12); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC04 (Cellulose synthase-like C4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G28180.1); similar to ATCSLC05 (Cellulose synthase-like C5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G31590.1); similar to putative CSLC9(cellulose synthase-like) [Oryza sativa (japonica cultivar-group)] (GB:BAC56816.1); similar to putative glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAT44138.1); similar to putative CSLC9 [Oryza sativa (japonica cultivar-group)] (GB:BAC10759.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -0.143416005074612 -1.42332602329313 0.182676470633928 1 0.324581785417888 2.78246248753312 -0.143416005074612 0.0987769622666481
AT2G04360_at 7.51953356578334 7.41527538300594 7.39809740460497 7.11411905118569 7.38256355176516 6.55423053525408 7.90954628529316 7.35020452449488 6.30988079081643 6.8580863384968 6.64156208101372 6.5851655590416 6.33577832549166 6.30794191810843 6.71995089817017 6.37956177882224 6.98822451549287 6.18097838620826 6.23883863792155 0.246868464427357 0.250351192713050 0.263752472914776 0.263955171527869 0.257386496088841 0.262987108784855 0.255404165501552 0.255368764825129 0.285971181759559 0.246868464427357 0.252957682102176 0.248110599329711 0.258783113719712 0.271530074839195 0.260222021880306 0.246868464427357 0.263190056700345 0.262824155446611 0.246868464427357 2 2|0 -|/ 1519647 1520302 1519871.333 1519394 1521053 - gene protein_coding_gene FALSE TRUE AT2G04360.1 similar to hypothetical protein alr4045 [Nostoc sp. PCC 7120] (GB:NP_488085.1); similar to Os08g0345400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061601.1) -0.193963563446581 -1.42329385310367 0.182685568520157 1 0.324543209523448 13.8236116319427 -0.193963563446581 0.180716823929686
AT1G79040_at 14.2051643716428 14.3547688172209 14.4854808724199 14.5147310215838 14.3042729286057 14.3936551572771 14.3929598061586 14.5269169862914 14.8260048949585 14.8679816010946 15.1688183038431 15.0868828203810 15.035529174266 15.042039398762 14.8674095311294 14.9693763798653 14.8575211788734 14.9632316384129 14.7465444740171 0.0500256404814907 0.0484886368962598 0.0499794645141581 0.0498070444288775 0.0482920432179172 0.0497611519898423 0.0487892458383754 0.0492428384493659 0.0521199331718124 0.0482920432179172 0.048572597633025 0.0489785645989266 0.0488754649515701 0.0510535691028843 0.0483989573122453 0.0483759948001394 0.0548933893046508 0.0515917804006363 0.0491749974658409 1 1|0 +|/ 29740981 29741649 29741287.6 29740909 29741902 + gene protein_coding_gene FALSE TRUE AT1G79040.1 PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ. Identical to Photosystem II 10 kDa polypeptide, chloroplast precursor (PSBR) [Arabidopsis Thaliana] (GB:P27202); similar to Photosystem II 10 kDa polypeptide, chloroplast precursor (GB:P49108); contains InterPro domain Photosystem II protein PsbR; (InterPro:IPR006814) 0.119961614739038 1.42293888869489 0.182785979644799 1 0.324117603036138 29.3034244334242 0.119961614739038 0.0383739772581412
AT2G28930_at 8.66024203149748 8.88247057818781 7.62610359523825 7.64182420051117 9.00139646149675 8.91107966676485 7.52014497094183 7.80257222021995 8.10167325423705 7.68644252811018 8.09788670068604 8.2318790871326 7.52453316295074 8.05395683253478 7.80889873431474 8.26803553866197 7.5908645239679 7.54934545236059 7.35276637020392 0.159933103957221 0.150980045118281 0.159149326113053 0.154457886968141 0.153163492198109 0.154639099759573 0.154871589631803 0.150327616085891 0.161512293979391 0.153418977615645 0.148890316375147 0.157573476893591 0.152971487457204 0.154851796710002 0.145929739716995 0.149115790608900 0.162360555106074 0.150766785928668 0.155834556100890 2 2|0 +|/ 12432978 12433589 12433261.7 12431380 12433751 + gene protein_coding_gene FALSE TRUE AT2G28930.1|AT2G28930.2|AT2G28930.3 APK1B (Arabidopsis protein kinase 1B); kinase Identical to Protein kinase APK1B, chloroplast precursor (EC 2.7.11.1) (APK1B) [Arabidopsis Thaliana] (GB:P46573;GB:Q9SLH5); similar to APK1A (Arabidopsis protein kinase 1A), kinase [Arabidopsis thaliana] (TAIR:AT1G07570.1); similar to protein kinase [Brassica rapa] (GB:BAD12263.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.12789557534172 1.42277960533567 0.182831052358709 1 0.32392664318214 16.0578804097372 0.12789557534172 0.0641832053457472
AT3G18360_at 1.91816566442019 2.01743968440963 1.70384691973894 1.66229694091847 1.17542055736574 1.85206539008007 1.68429983986021 1.40867067140350 2.0817536191958 1.45403326144165 1.99676807911461 1.21997626598506 1.77655624707398 1.41133704009456 1.57810434598316 1.62352561130134 1.54877570987911 1.76974794622525 1.79190842485338 0.207975335009532 0.209468048611165 0.216275942661976 0.210926222447343 0.214614278546767 0.210668448057225 0.215589189223829 0.206252268505238 0.220345710785596 0.210438522085508 0.203849620044279 0.214189022583986 0.211153645023858 0.206347804417695 0.210571258992163 0.203825243707529 0.207874818439402 0.208386558100400 0.215904485683149 3 3 - 6300849 6301391 6301150.545 6300833 6301690 - gene protein_coding_gene FALSE TRUE AT3G18360.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT1G21320.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28841.1); contains InterPro domain VQ; (InterPro:IPR008889) -0.159518021227028 -1.42276678275317 0.182834681198182 1 0.323911271201016 3.37352437895996 -0.159518021227028 0.127803112931284
AT1G27480_at 8.3469307487211 8.5032334502618 7.97486261980507 8.01320150082496 8.40485198887463 8.61091266417573 8.97036977398465 8.91168723932321 8.30510506885402 8.63581456009164 8.64464706912458 8.57100444754413 8.6297813634576 8.52187125910743 8.84839337990836 8.87266135184324 8.82189983957177 8.56531247634948 8.5482354938995 0.137184469258276 0.135290092048479 0.146038551539106 0.135083887801128 0.137936509678548 0.141089848600039 0.139504823981957 0.138170467542017 0.141740054274880 0.133614713994413 0.140809524061246 0.136083048008695 0.130817230281724 0.139877315703131 0.140220542667688 0.13252374272795 0.13770005660537 0.135144750818577 0.141232612075691 1 1 + 9545606 9546045 9545765.818 9544501 9546272 + gene protein_coding_gene FALSE TRUE AT1G27480.1 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to lecithine cholesterol acyltransferase-like protein [Medicago truncatula] (GB:AAQ10316.1); contains InterPro domain CUB; (InterPro:IPR000859); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lecithin:cholesterol acyltransferase; (InterPro:IPR003386) -0.122018376118826 -1.42261211684071 0.182878457039490 1 0.323725861657817 17.0574219679022 -0.122018376118826 0.0463725299767873
AT2G43040_at 1.26324919930353 1.24694963156154 0.789796293854487 1.52051744769896 1.16691248141082 1.17664603896338 1.72782863795776 1.19231614549710 1.75814878165106 1.72921296212772 1.4727205270391 1.13507620579262 1.40060620456353 1.03580685189382 1.76038798695236 1.19516311046895 1.81525488428186 1.88380826046097 1.38351503251514 0.213834575479381 0.206710939518287 0.219347127484187 0.206710939518287 0.212900184291805 0.210068263574516 0.213318901073018 0.206978380036927 0.209419750534978 0.206725607249007 0.208697207723021 0.206710939518287 0.206710939518287 0.215063732808838 0.209466942871749 0.206710939518287 0.218818955059758 0.209236577712107 0.213911499133124 2 2 - 17903168 17903901 17903516.7 17902960 17906451 - gene protein_coding_gene FALSE TRUE AT2G43040.1 NPG1 (NO POLLEN GERMINATION 1); calmodulin binding encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development. similar to NPGR2 (NO POLLEN GERMINATION RELATED 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G28600.1); similar to calmodulin-binding protein [Oryza sativa (indica cultivar-group)] (GB:AAP85535.1); similar to Os12g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067047.1); similar to calmodulin-binding protein MPCBP [Zea mays] (GB:AAG12459.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.177695213132194 -1.42244741319243 0.182925083660506 1 0.323528433754924 2.80351628254576 -0.177695213132194 0.156811538471437
AT3G50810_at 3.56069127812761 3.34257921427112 3.89580818220233 3.13813748498266 2.78923727256294 2.58861760471765 1.84328362568832 1.37538872225237 2.14898511635608 1.78764759600039 1.3788092523033 1.38180590853558 1.52267399914813 1.91864690427585 2.09374120536281 1.64115451810102 1.73027436322824 1.93680025589401 1.79386596386406 0.267517697570037 0.264673805482896 0.278555453799088 0.259349333718191 0.246066185044530 0.251820985490743 0.25109309527015 0.248474548099313 0.250993072046638 0.249255376988259 0.246066185044530 0.249401464969141 0.251522525952405 0.256856243569441 0.248521546839158 0.247603297202252 0.246777015052558 0.264376375240260 0.258482582177046 3 0|3 /|- 18898598 18900331 18899809.625 18898595 18900849 - gene protein_coding_gene FALSE TRUE AT3G50810.1 integral membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37235.1); similar to Os10g0343200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064388.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87332.1); similar to Os03g0767900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051391.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.181393250740406 1.42239431413593 0.182940117830934 1 0.323464787891924 4.62204518623210 0.181393250740406 0.162414512533925
AT2G44740_at 5.65851500438146 6.30499846821945 3.0837984405325 3.05709945605836 4.87711653698734 4.57351463943230 5.12138792534799 3.98814890233893 5.18868025241193 4.48484014979658 7.48019140424527 7.19730825194383 6.47405071469676 6.19482208229412 6.4718168117893 5.17623318839804 4.07464455345436 6.3061390114541 6.11578983945508 0.279337539474574 0.270162331968708 0.273236545457702 0.289920010600728 0.276707589628525 0.279131536405879 0.277491492174424 0.291056740250291 0.306346318979042 0.273688558858026 0.27871142876665 0.28066290619103 0.279779384632343 0.289372348170911 0.272690169145606 0.273190787068171 0.269126091605667 0.285898248237956 0.279215012057076 2 2 - 18449407 18450277 18449882.545 18449064 18450474 - gene protein_coding_gene FALSE TRUE AT2G44740.1 CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase similar to CYCP4,2 (CYCLIN P4,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G61650.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os10g0563900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065406.1); similar to Os04g0544200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053459.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -0.230791484211361 -1.42236120528417 0.182949492615578 1 0.32342510358401 10.3005745047485 -0.230791484211361 0.231858280804249
ATMG00580_at 3.83581379011416 4.17609767726732 3.97755694494056 4.23403952508475 3.75216776512199 4.05596388712458 3.31994364651001 3.9342205554212 5.02429301348698 4.97389352782371 4.93961306225871 4.78693449231453 5.19916140871494 5.08254668412517 5.11487500456165 5.75278811866565 4.93960630404109 4.4843017556897 4.67932837849312 0.455575946276812 0.418625086487446 0.418625086487446 0.418625086487446 0.418625086487446 0.418625086487446 0.513582017678498 0.43275661945834 0.418625086487446 0.418625086487446 0.446664722723748 0.462203424107863 0.418625086487446 0.491640592750936 0.462515776244323 0.453347339890188 0.455673360129322 0.418625086487446 0.418625086487446 M 0 / Inf -Inf NA 161693 169674 + gene protein_coding_gene FALSE FALSE ATMG00580.1 NADH dehydrogenase subunit 4 similar to NADH dehydrogenase subunit 4 [Nicotiana tabacum] (GB:YP_173416.1); similar to NADH dehydrogenase subunit 4 [Beta vulgaris subsp. vulgaris] (GB:NP_064080.1); similar to NADH-ubiquinone oxidoreductase chain 4 (NADH dehydrogenase subunit 4) (GB:Q04050); contains InterPro domain Proton-translocating NADH-quinone oxidoreductase, chain M; (InterPro:IPR010227); contains InterPro domain NADH/Ubiquinone/plastoquinone (complex I); (InterPro:IPR001750); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 4; (InterPro:IPR003918) 0.166693246884144 1.42232595813468 0.182959473306796 1 0.323382856979846 8.87571713748025 0.166693246884144 0.139650357542359
AT3G48910_at 0.345623198715841 0.363656291484754 0.090844837519006 0.509606728864482 0.501371055508234 -0.0708358819795278 0.570082203256046 0.0913277803754863 0.31344341405222 0.566656414728618 0.161531479467798 0.77999530968575 0.133416673063525 0.530132053752679 -0.103758822747971 0.52958466490017 -0.0354741213988331 0.614401035382767 0.875935989591142 0.219655195335169 0.230480459038432 0.219805184619309 0.219655195335169 0.219655195335169 0.219655195335169 0.225182945429968 0.219655195335169 0.226281963745413 0.220969055747159 0.222944642345030 0.219659912333396 0.221578723865937 0.223067514228768 0.224492757030200 0.219655195335169 0.223241825245917 0.226873745611180 0.223986321494937 3 3|0 +|/ 18146160 18147046 18146749.5 18146073 18147324 + gene protein_coding_gene FALSE TRUE AT3G48910.1 chromatin binding similar to Chromo; Helix-hairpin-helix motif, class 2 [Medicago truncatula] (GB:ABE80875.1); contains InterPro domain Chromo; (InterPro:IPR000953) -0.172021211128704 -1.42228368395258 0.182971444401805 1 0.323332188811004 0.755996430119988 -0.172021211128704 0.148092057205025
AT1G71220_at 8.51239917650181 8.55788813646355 8.32713279703517 8.35438625481474 8.36004502406417 6.83061431565231 7.90374180923656 7.65256541082137 7.0588794364606 7.4878583215945 6.4614030831084 7.43743292363465 7.03448345074417 6.98069192906111 6.54031955120135 6.90534361495122 6.94098379965822 6.94129412752199 7.15431257709681 0.275057700425705 0.286785789866137 0.283985231385615 0.283133609339703 0.28799238185949 0.280555438206898 0.262860017479002 0.262860017479002 0.279290402992024 0.262860017479002 0.262860017479002 0.267382654409860 0.262860017479002 0.273500519771769 0.271695728126805 0.269629122721114 0.288517088677164 0.27086722612692 0.262860017479002 1 0|1 /|+ 26854679 26855311 26855075.5 26845292 26855581 + gene protein_coding_gene FALSE TRUE AT1G71220.1 UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to hypothetical protein LOC553288 [Danio rerio] (GB:NP_001071002.1); similar to PREDICTED: similar to UDP-glucose:glycoprotein glucosyltransferase 1 precursor (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase) (HUGT1) isoform 1 [Bos taurus] (GB:XP_594485.2); similar to putative UDP-glucose:glycoprotein glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD28382.1); contains InterPro domain UDP-glucose:Glycoprotein Glucosyltransferase; (InterPro:IPR009448) -0.258521710214862 -1.42217394646252 0.183002522677351 1 0.323200666417913 15.1318103680916 -0.258521710214862 0.268377593339744
AT3G12850_at 1.68792988132966 1.87838783248618 1.81113914456397 1.93012136993012 1.24984995927199 1.71218012334964 1.49352626384508 2.08472841253661 2.11328298889475 1.96274579075287 2.14421076728624 1.83223318536284 1.80317258579844 1.94424799548523 2.05811949940479 1.75567811765181 2.13252052342823 1.72706709578998 2.35162205051959 0.229154830710522 0.236922926774193 0.237400819353829 0.242892972042403 0.248717070619599 0.239329536845779 0.245050946363922 0.235557374983595 0.242547194247773 0.238271346001036 0.232595006382987 0.230985063851442 0.239378501255656 0.229154830710522 0.23070437747495 0.238301326810276 0.234856915099903 0.232457835431282 0.237684300700461 3 3|0 -|/ 4088420 4089490 4088808.7 4088381 4090310 - gene protein_coding_gene FALSE TRUE AT3G12850.1 COP9 signalosome complex-related / CSN complex-related similar to FUS6 (FUSCA 6) [Arabidopsis thaliana] (TAIR:AT3G61140.1); similar to FUS6 (GB:AAA32792.1); contains InterPro domain Annexin; (InterPro:IPR001464) -0.164107251858455 -1.42179378022887 0.183110222436384 1 0.322745082012723 3.76458612241333 -0.164107251858455 0.135569322931993
AT4G27654_at 0.46058800364558 0.601803666440187 0.424666598511972 0.751326286027988 0.649599066072559 0.529239555391529 0.598951119306003 0.864564636887303 1.00241285280851 1.00437486218193 0.630309599594793 0.588361509366299 0.52220034814958 0.759778423319725 0.717287042944607 0.900751134129186 0.977672681459877 1.00194184472344 0.956213474898792 0.198755712158133 0.200959782454487 0.199806555414926 0.198755712158133 0.200843198225604 0.205998900709914 0.201377358067309 0.201962111106681 0.206903224583324 0.215445689684665 0.200623227109492 0.199001158946513 0.201381785094050 0.201926712726693 0.209138684858047 0.203705121258565 0.206919157852467 0.199029546763963 0.199799235041373 4 4 + 13811844 13811988 13811903.455 13811651 13812132 + gene protein_coding_gene FALSE TRUE AT4G27654.1 unknown protein -0.134074110202115 -1.42145703872174 0.183205664903511 1 0.322341604173117 1.48506980966406 -0.134074110202115 0.0796212015887981
AT1G21510_at 0.655783410201271 0.698230435673647 0.679370278534708 0.892501729983572 0.670277357239178 0.981411240955916 1.30657494312966 0.913929280671276 1.27152121888569 1.20589326334582 0.928853976123719 0.819543415750056 1.30275591747279 0.711690104621995 0.954984225957666 0.95823940276061 1.05955796969142 1.53591994008135 1.20741762677352 0.210990448895594 0.196718632217601 0.192621158230012 0.200248384413274 0.192758392008913 0.193830913576942 0.191594655239841 0.200580903839814 0.208530573178021 0.198149847326973 0.207893194525902 0.19403304996564 0.195259117191377 0.19695521330688 0.199330520631574 0.201635949105426 0.190955155456306 0.197976216678924 0.192769229706688 1 1 - 7531647 7532031 7531831.364 7531301 7532618 - gene protein_coding_gene FALSE TRUE AT1G21510.1 similar to Epa5p [Candida glabrata] (GB:AAQ82687.1) -0.141036808175755 -1.42113604025604 0.183296684503971 1 0.32195704811915 1.98087007891155 -0.141036808175755 0.0945014228734398
AT4G36880_at 2.0033665867259 1.79721789497028 1.97514317581869 2.28484364230908 1.68012366147057 2.00221662550002 1.57227152796309 1.75609529680189 1.99356585424408 1.96621613273554 1.96458113777776 1.93406368799371 2.05173762785582 1.98155304198753 2.01351138981301 1.61588646366627 1.70731427964424 1.83908552643328 1.48032406740401 0.238882145973372 0.245312841123506 0.238956955972312 0.240187312970694 0.236700324934926 0.249437764943379 0.24228353254530 0.245570833070237 0.236115659520041 0.247826521394145 0.235673190377330 0.235673190377330 0.239882572596971 0.239651261959594 0.235673190377330 0.237882497190770 0.24813428553479 0.235673190377330 0.235673190377330 4 4 - 17374744 17375379 17375010.909 17374455 17376222 - gene protein_coding_gene FALSE TRUE AT4G36880.1 cysteine proteinase, putative Identical to Germination-specific cysteine protease 1 precursor (EC 3.4.22.-) (GCP1) [Arabidopsis Thaliana] (GB:Q94B08;GB:O23195); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to cysteine proteinase (RD21A) / thiol protease [Arabidopsis thaliana] (TAIR:AT1G47128.1); similar to COT44=cysteine proteinase homolog [Brassica napus, seedling, rapid cycling base population CrGC5, Peptide, 328 aa] (GB:AAB23155.1); similar to Cysteine proteinase COT44 precursor (GB:P25251); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.139220954630603 1.42062003412603 0.183443078986227 1 0.321338993161687 3.73482746604044 0.139220954630603 0.0909067065779958
AT4G11720_at 1.14421830804584 0.733393750191134 0.650632849885126 0.877181246106083 1.07626770798045 0.871257143884647 1.40145949983508 0.96341587948533 1.26773948455670 1.61650340366795 1.23200795381556 1.48901127421662 1.02335085867037 1.71518985130617 1.37165344662155 1.38549399875851 1.54741901453694 1.1915553073811 1.56537862781451 0.306002611196839 0.294755544612818 0.299914710183144 0.307480873025142 0.300443574693184 0.308275555529977 0.286194477402087 0.290890363301334 0.292416654158365 0.289108440407387 0.297777400461613 0.296758830232205 0.295861830318326 0.296810079541560 0.304341709934528 0.290939315157861 0.300824410174788 0.296055666439702 0.295801274740051 4 4|0 +|/ 7066095 7066717 7066496.444 7063249 7066872 + gene protein_coding_gene FALSE TRUE AT4G11720.1 GCS1/HAP2 (GENERATIVE CELL-SPECIFIC 1) Encodes HAP2 with the following predicted motifs: an N-terminal secretion signal, a single transmembrane domain and a C-terminal histidine-rich domain. HAP2 is expressed only in the haploid sperm and is required for pollen tube guidance and fertilization. Predominantly localized to sperm endoplasmic reticulum membranes. May also reside in other endomembranes, including the plasma membrane. similar to generative cell specific-1 [Lilium lon (GB:BAE71142.1); similar to Os05g0269500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055054.1) -0.152767040637486 -1.42058944772549 0.183451759661857 1 0.321302362444219 2.39106199076491 -0.152767040637486 0.116605015545025
AT3G08620_at 4.57997556194695 4.87439817071849 5.20673435781901 5.23450272090007 5.04693323354476 4.62165255761261 4.94722443753197 5.06402486905869 4.46457784961006 4.86115680434867 4.63024398217204 4.50659553069672 4.43195624955505 4.73036065769975 3.81242560446715 4.63188921247043 4.25124197657162 4.23061662727890 5.20491000051315 0.201693752214219 0.212421382984543 0.201859101265285 0.209571924062615 0.201693752214219 0.215525171334405 0.217545857051201 0.209627668890797 0.210308962632720 0.205469535111814 0.211147118471909 0.204720407566082 0.204689747585234 0.207591778654200 0.218710016245811 0.201948794105740 0.209507826977018 0.204734886002941 0.201693752214219 3 3|0 +|/ 2618680 2620268 2619618 2617774 2620579 + gene protein_coding_gene FALSE TRUE AT3G08620.1 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G38610.2); similar to hypothetical protein [Nicotiana tabacum] (GB:BAD06470.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.139666015194124 -1.42027344711048 0.183541463610232 1 0.320923946017397 9.5702879627772 -0.139666015194124 0.0918921484804991
AT1G61160_at 3.68257798947937 2.80469212292296 3.24107352599238 3.08259267934823 3.0202104217698 3.22948989225224 3.02304444177388 3.10093451959426 4.00922190482752 3.36082131399203 2.99480926612844 2.82606500540983 3.24686893225347 3.21954898932832 3.14199087882726 3.05064095601263 3.50282065741709 3.18923297986802 3.11424869869445 0.206132400720902 0.210249024589289 0.206937621285007 0.209260909775349 0.205554981084945 0.208871660439876 0.213301879259743 0.214084004276014 0.204504458371935 0.211101069884538 0.205041120667698 0.216654257907484 0.202964800935477 0.206401336169375 0.21046777633662 0.207729739342508 0.203762857866292 0.208658561779221 0.205799988020259 1 1 - 22548705 22549135 22548895.545 22548684 22550022 - gene protein_coding_gene FALSE TRUE AT1G61160.1 contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) -0.178868701475494 -1.41958750838638 0.183736310548115 1 0.320102713485477 6.46870753947179 -0.178868701475494 0.159141104072422
AT3G14067_at 10.2989446964141 10.6260920599815 11.0410674409906 11.2239211040748 10.9994216293872 11.0876495472297 11.3545169136888 11.3696363113067 10.7650552440525 10.7788080220433 10.8343483672252 10.5293638494913 11.1891298043511 10.7505428536478 10.2096382091126 11.3057243186781 11.2808504988671 10.7672313434121 10.7871821726723 0.0915524206171477 0.0891961448953868 0.0898771936861665 0.0916023078046835 0.0891961448953868 0.0905650420008339 0.089941441537223 0.0898731309589784 0.0958700393334088 0.0899814568101488 0.0891961448953868 0.0901877522225029 0.09003466847805 0.0913113984604568 0.09115129182247 0.0891961448953868 0.0915594473949547 0.0911608510010528 0.0965565927361198 3 3 - 4658761 4659049 4658897.7 4658205 4660791 - gene protein_coding_gene FALSE TRUE AT3G14067.1 subtilase family protein similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to SBT1 [Solanum lycopersicum] (GB:CAA67429.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.128527972207474 1.41929694654494 0.183818899920853 1 0.319754920607104 21.8178406138113 0.128527972207474 0.0666818988691782
AT4G33750_at 6.63333394448847 7.2382906638934 6.99670081266335 7.17182042136475 8.04497900666076 7.72087756774758 7.36531218890097 7.72307522703833 7.62257749205472 7.29819960981847 7.73797969234522 7.85344555640164 7.8833069781156 8.00103389775257 6.82674139731106 7.89453992875199 7.09359158029759 7.5461604021779 7.6346180636361 0.222436177723398 0.206944079152221 0.219591284245221 0.220875890020912 0.204431059325773 0.21250640457607 0.220406571613878 0.212850793882266 0.234125952256706 0.212007710142019 0.210770330523201 0.210054584221190 0.210087509126657 0.210763069722749 0.21038366802375 0.20430129104141 0.236135180055646 0.216561054437436 0.207266940667834 4 4 + 16188384 16188702 16188541.455 16188358 16188927 + gene protein_coding_gene FALSE TRUE AT4G33750.1 unknown protein 0.164863160001626 1.41900700065214 0.183901345502524 1 0.319407911918276 14.9233312212517 0.164863160001626 0.137322517125131
AT3G06620_at 3.72890677680849 3.59353336635893 4.0597855919896 3.81246982200691 5.02396997569592 3.97744247938172 4.58926675082935 3.97329256920891 3.28380914951863 3.6253954487249 4.07741674457374 3.78855739335683 3.82487733815394 3.60727385312134 3.35536369706309 3.77357247765191 3.10243447947825 3.55396646618044 3.42885112848717 0.232631163828853 0.234871609853622 0.235411178475247 0.225690176090725 0.241712276756349 0.238310620962479 0.254202040589315 0.234943244530819 0.230332263012473 0.22758080543384 0.225878604546984 0.225690176090725 0.231092093734303 0.231957641473264 0.232596479749160 0.225690176090725 0.233654262034427 0.229177145953534 0.22952879116403 3 3|0 -|/ 2062841 2064270 2063336 2062212 2067422 - gene protein_coding_gene FALSE TRUE AT3G06620.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67890.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06630.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06640.1); similar to Os11g0678000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068453.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22048.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98953.2); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.218290666043829 1.41867596826617 0.183995512172526 1 0.319011788027350 7.63555910742215 0.218290666043829 0.215738514794185
AT3G21410_at 1.41629630196448 1.56996223017252 0.88284659146892 1.17706076736673 1.41290547317955 1.08586872344534 1.57732918665962 1.26124832901977 1.87701628594635 1.58285581929227 1.12081995141105 1.43369687115394 1.71087588292249 1.66129428569272 2.13733131365013 1.73308159304979 1.48203383507296 1.48838455636405 1.23165501315807 0.218446135144938 0.216353157505204 0.216787735084767 0.218636728924611 0.220760219631514 0.216489819407499 0.218691857944323 0.224918911061816 0.227180502104155 0.231034404274737 0.224895325329895 0.217170549476214 0.222854042257987 0.217225839242184 0.215219773134915 0.216018045268295 0.217871857818826 0.218984850051894 0.220505157576804 3 3 - 7536740 7537203 7536959.091 7536725 7537957 - gene protein_coding_gene FALSE TRUE AT3G21410.1 F-box family protein (FBW1) similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22650.1); similar to Putative F-Box protein, identical [Solanum demissum] (GB:AAT38720.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.142220604861609 -1.41821399682162 0.184126994373823 1 0.318459080470649 2.87783077989138 -0.142220604861609 0.0974399714366746
AT2G37340_at 8.94140701424637 9.0916687610004 9.39100523254026 9.29151257748663 9.57695471775276 9.75332533414854 9.02736834826582 9.2899801980774 9.46560966610258 9.28453054326368 9.42432757558053 9.21587884269384 9.57216790760058 9.42334382458355 9.21393135771837 9.26318449689279 9.1776010848757 9.20648282355548 9.67071561208095 0.092655226529007 0.0900764379503827 0.0911652292777686 0.0935556719733202 0.091736113111339 0.0959720852287128 0.0900923466536664 0.0897366640976386 0.100201460162195 0.0919966474777843 0.0888518209512035 0.0908923330710997 0.091176585032479 0.0967248527717042 0.0888613725659664 0.0902821148387076 0.101052902090788 0.0955131714242589 0.0897815272457015 2 2 - 15677477 15678197 15677740.909 15677226 15679779 - gene protein_coding_gene FALSE TRUE AT2G37340.1|AT2G37340.2|AT2G37340.3 RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33); nucleic acid binding / nucleotide binding / zinc ion binding|RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33); nucleic acid binding / zinc ion binding encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. similar to RSZ32, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G53500.2); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RSZ32, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G53500.2); similar to Os01g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042066.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)|similar to RSZ32, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G53500.2); similar to Os01g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042066.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.127044758561541 1.41815909721954 0.184142624688607 1 0.318393405918456 18.6882694461081 0.127044758561541 0.0630044853679742
AT3G44520_at 1.02521988693862 1.33844340720804 1.03451353654085 1.08236971371991 0.977194344775969 1.13746796651360 1.12576359659941 0.73927527574879 1.64430541115656 1.26531443820934 0.538822338100638 0.563045200525946 1.21697314503790 1.66844223605276 1.36911100847293 0.930283927030363 1.52556493667283 1.35404876408873 1.36350177150635 0.180686256504606 0.179265073115124 0.183247753975559 0.178506612381082 0.180926081970214 0.179611198473208 0.181284939237181 0.181891038524997 0.183778201569041 0.182601030200539 0.198881528987664 0.180715866481979 0.1798447681289 0.185822183366163 0.186331777022063 0.181645060391843 0.192391451033855 0.181701068335718 0.191648559699439 3 3|0 -|/ 16121392 16122071 16121633.8 16121387 16122126 - gene protein_coding_gene FALSE TRUE AT3G44520.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G08310.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE93176.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.138938290181226 -1.41813133289831 0.184150529819184 1 0.318360193032813 2.34261112506657 -0.138938290181226 0.0908265072676107
AT4G14880_at 12.0581916031626 12.0235900714277 11.8926615932352 11.9170324187608 11.9102126919509 11.5294711906981 11.8888032628288 11.763789497228 11.0021822624375 11.8153856457618 11.9199114188142 11.7838749273574 11.7012041809397 11.7516518513799 11.8708918792836 11.7292528762465 11.6929856780414 11.8459412428046 11.4021541314111 0.0841282826778824 0.082933189604275 0.084929988565906 0.0841747543046916 0.0846021510134004 0.0957407997745406 0.0832948514872882 0.0866351478005429 0.1021360420213 0.0821632259389311 0.0861381924917973 0.0815570298162424 0.0854920535125198 0.088781480134291 0.0861401410611568 0.0815570298162424 0.0894552443115825 0.0921787802084645 0.0829809419117742 4 4|0 -|/ 8518207 8519353 8518860.625 8517955 8520464 - gene protein_coding_gene FALSE TRUE AT4G14880.1|AT4G14880.2 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Identical to Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O- acetylserine (Thiol)-lyase) (CSase A) (CS-A) (OAS-TL A) (Cys-3A) (At.OAS.5-8) (OASA1) [Arabidopsis Thaliana] (GB:P47998;GB:O23343;GB:Q42570;GB:Q94AS7); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.3); similar to Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) (GB:O23733); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) 0.129570554327211 1.41763472753768 0.184291973060218 1 0.317766204826777 23.4697381761924 0.129570554327211 0.0697356048142503
AT3G51560_at 3.49706472389277 3.63028601333815 3.75927964601609 3.57685645968537 2.93994044817293 3.53435745136522 3.22143741535064 3.46217279080832 3.46006375119388 3.95646051996611 3.33700919098968 3.30741468540706 3.20981022014709 3.65239812846939 3.40818369321831 3.3030578752539 3.85613124825757 3.46953068119867 3.83000076972075 0.19691795703057 0.197875995949775 0.200931324216608 0.203975827802878 0.19691795703057 0.204303958334462 0.203154037511487 0.201199697012017 0.200695560260516 0.205019469127003 0.205961814815352 0.19691795703057 0.19691795703057 0.205213207893954 0.204472066171421 0.201800464515581 0.212533013717846 0.203189854273542 0.217130399421719 3 3 - 19132791 19133356 19133142.727 19132787 19136892 - gene protein_coding_gene FALSE TRUE AT3G51560.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G17050.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36140.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G19520.1); similar to MRGH5 [Cucumis melo] (GB:AAO45748.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.153015724731721 -1.41731443120743 0.184383248626380 1 0.317383172369076 7.04856619140933 -0.153015724731721 0.117665874649099
AT4G19490_at 5.15159836085419 5.41292657529451 5.63379659490905 5.50219863454173 5.64455950355388 5.13426492234086 5.59792088863427 5.1624260194617 4.52220600047422 5.03470547645794 4.83758714802282 5.07011468876867 5.04471618460034 4.81058787049258 4.96388640195992 5.31600816385131 5.03045252012639 5.05059241471069 4.98296581864176 0.257771534176356 0.274937777450631 0.263239782241332 0.268679652295853 0.265593608214886 0.262316697263078 0.268956095364915 0.257771534176356 0.266432203137446 0.275857143849699 0.264883851083085 0.262733867463384 0.272182072695265 0.285841244478681 0.273356063819316 0.272787851063555 0.267917995310066 0.27416409648536 0.257771534176356 4 4 + 10620737 10622665 10621622.625 10615807 10623532 + gene protein_coding_gene FALSE TRUE AT4G19490.1|AT4G19490.2 protein binding similar to OSJNBa0083I11.13 [Oryza sativa (japonica cultivar-group)] (GB:CAE04303.2); similar to hypothetical protein CNBC0010 [Cryptococcus neoformans var. neoformans B-3501A] (GB:EAL22287.1); similar to Os04g0212100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052256.1); contains InterPro domain Vps54-like; (InterPro:IPR012501) 0.158177180825245 1.4168602464433 0.184512744174193 1 0.316840125107152 10.3360209070777 0.158177180825245 0.12665743039126
AT3G17450_at 5.86467540256332 6.16787969271172 5.86772143238239 5.87741486087062 5.86771346989324 6.41429745261815 5.60382721070244 6.120069387204 5.68263315274516 5.82888221676972 5.59515737197407 5.6100613929709 5.63357325751516 4.94363872958943 5.34068678515469 5.30639091943526 5.77730237682819 5.30402191088602 6.00659993948426 0.216712789924871 0.22076728750741 0.226413054859553 0.215731999754013 0.213354393819311 0.226147226582085 0.218148946140215 0.219283141317162 0.222575121530361 0.221330250756975 0.222605280058349 0.218663448258377 0.220843990781926 0.220599645824172 0.219472433531155 0.216864347245501 0.217692853891189 0.212827857832285 0.224371837544895 3 3 - 5972822 5973532 5973193.182 5972677 5976124 - gene protein_coding_gene FALSE TRUE AT3G17450.1 hAT dimerisation domain-containing protein similar to DNA binding / protein dimerization [Arabidopsis thaliana] (TAIR:AT3G22220.2); similar to Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 [Medicago truncatula] (GB:ABE91460.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAB39405.1); contains InterPro domain Protein of unknown function DUF1544; (InterPro:IPR011523); contains InterPro domain HAT dimerisation; (InterPro:IPR008906); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) -0.166421897988221 -1.41656196950168 0.184597829637878 1 0.316483552154738 11.6120627949735 -0.166421897988221 0.140301003143906
AT2G38970_at 4.08259055915415 5.03798336984136 3.77477090923366 4.13735156506262 2.86578029196018 3.46983025352829 3.40341664967615 3.64395929855515 3.7934672419687 4.18463704062370 3.78653841177322 4.57544367146465 3.64888790128741 4.12736662968575 4.95318919468867 4.0832675979142 3.87793516186021 4.10239622141406 4.2956049102134 0.189480229046869 0.194283884746919 0.183625961205264 0.182895398417951 0.186169066173635 0.187567873155995 0.189695217647035 0.198530665475296 0.180499116460841 0.185271724791366 0.188470586144499 0.187026869532849 0.181309866402242 0.181223793276265 0.183730735332020 0.180029449154631 0.187957926589779 0.194880216154117 0.197420741561345 2 2 + 16283160 16283695 16283430.455 16280979 16283950 + gene protein_coding_gene FALSE TRUE AT2G38970.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60710.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G54780.1); similar to Os02g0806700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048450.1); similar to Hypothetical protein protein containing a von Willebrand factor type A domain [Oryza sativa] (GB:AAK98695.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.213456256600715 -1.41625278437209 0.184686061724137 1 0.316113991568843 7.91976761030792 -0.213456256600715 0.209601796829930
AT1G22750_at 10.3470772954184 10.5212066953628 10.6891705211623 10.6871534056472 10.4496675675806 10.6617014762569 10.6087462394858 10.8391145472258 10.0993376208278 9.84064019636437 10.0906046238865 9.98711560595504 10.3428313490148 10.2079182294357 9.89198949748952 10.2135533481564 10.2042124612112 10.0198734688392 9.78895124961797 0.106071719078214 0.101311359842228 0.10169959629784 0.105210312895025 0.101518978695354 0.105515884930838 0.103382365326253 0.101856717361704 0.118875869097870 0.106024966856199 0.104709461046387 0.107536742625334 0.103902271588369 0.103440239700527 0.110584263681406 0.104009895999438 0.108634477650449 0.105868049480703 0.104454362978831 1 1|0 +|/ 8051293 8052395 8051742.571 8050849 8052919 + gene protein_coding_gene FALSE TRUE AT1G22750.1|AT1G22750.2|AT1G22750.3|AT1G22750.4 similar to Os06g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057938.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68608.1); contains InterPro domain Protein of unknown function DUF1475; (InterPro:IPR009943)|similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68608.1); contains InterPro domain Protein of unknown function DUF1475; (InterPro:IPR009943) 0.126503174508553 1.41619520838280 0.184702496105078 1 0.316045178454352 20.6151823911518 0.126503174508553 0.0619992460823357
AT1G76240_at 5.92501621361165 6.26368117257077 6.09472821883192 5.91627362543448 6.50347126301869 6.52028822428091 7.07250295370397 7.71727781396964 7.2693761873229 7.50141952709829 8.88765011463612 8.7026695307322 8.75866166755802 8.83654448002746 7.80792155338804 8.27576570733346 7.73549884894496 7.91540823490682 7.90669123608583 0.251739563864276 0.241036475548845 0.268225873086880 0.252501870505094 0.23379890012324 0.262546183030743 0.240257967783120 0.243030068537165 0.239821905913867 0.237798989540317 0.234785345324390 0.239971700977872 0.230153595109068 0.246352398842884 0.2347951890606 0.233437877335929 0.251510338178798 0.244992058122530 0.238054789590481 1 1 - 28607850 28608410 28608191.091 28607705 28608823 - gene protein_coding_gene FALSE TRUE AT1G76240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17080.1); similar to Os06g0725700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058624.1); similar to Os06g0725500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058623.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61705.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) 0.159961747391352 1.41612539911983 0.184722423985587 1 0.315961746979534 14.4637436026910 0.159961747391352 0.12979762302314
AFFX-r2-Ec-bioB-3_at 7.14182435865231 7.2083217128084 7.2019761808825 6.9537176037623 7.01249746769608 7.04212558859052 7.43487735494013 7.44240449237068 2.02892439732057 1.53954551745010 1.79799325833066 1.51713954817148 1.86749295271516 2.01110571492714 2.03530133680938 1.53114962518804 1.88726529046567 1.63681747881515 1.75134510297400 0.395392048012762 0.396769804281598 0.395858307634314 0.396400637652233 0.397193816824271 0.394475058763678 0.394521902658667 0.398823668488376 0.386546334315515 0.386546334315515 0.392858498037645 0.388137521862172 0.392828174833769 0.387896382778619 0.386546334315515 0.389554989940943 0.404921486549213 0.386546334315515 0.391044958277425 NA NA NA NA NA FALSE FALSE -0.121008145681875 -1.41594587889999 0.184773678499299 1 0.31574720864108 8.95912050659256 -0.121008145681875 0.0447903123694031
AT2G32050_at 1.01104765798846 1.25689760386357 1.12400103999639 1.52063749045427 1.36839676756860 1.39127203726681 0.896566652754454 1.11864546974799 1.41533813151297 0.915921195401342 1.32515235378256 0.999979754968517 0.889197814720746 1.08803837599101 0.845725941788837 0.99541031356681 1.21312909097920 1.23186070535841 0.901772648264575 0.180709312771586 0.178386329769959 0.176097265492056 0.174941876294776 0.174941876294776 0.177304538820119 0.177020848742324 0.180403530668207 0.179499084088046 0.183878765363973 0.182003529069732 0.174941876294776 0.179514875652362 0.180579307982821 0.186962675810094 0.179218991258499 0.182136497365769 0.185423682270054 0.175699596961645 2 2 - 13644971 13645480 13645250 13644956 13645720 - gene protein_coding_gene FALSE TRUE AT2G32050.1 cell cycle control protein-related similar to cell cycle control protein-related [Arabidopsis thaliana] (TAIR:AT3G43250.1); similar to PREDICTED: similar to CG8435-PA [Apis mellifera] (GB:XP_396635.2); similar to hypothetical protein DDBDRAFT_0205793 [Dictyostelium discoideum AX4] (GB:XP_641652.1); similar to Os01g0588700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043437.1); contains InterPro domain Protein of unknown function DUF572; (InterPro:IPR007590) 0.13808597828389 1.41582411076930 0.184808451149991 1 0.315601698061371 2.28655264943214 0.13808597828389 0.0895221240892302
AT2G45530_at 7.10264356099403 7.33528072839106 7.42664727516889 7.41584629818077 7.92674503269424 7.93932553887453 7.66864451733968 7.65714015776251 8.0601368910474 7.90351439467146 7.63974297540066 7.42318125250635 7.41468031302576 7.8015170712578 6.93898817343061 7.81738168521845 7.8526945131626 7.1240127188029 7.96864603822045 0.171323954285516 0.165796373348898 0.170067309830413 0.168347636780931 0.167777459377535 0.171452647618534 0.168934811049381 0.17075048294557 0.174238455069404 0.172521806415776 0.172036244747524 0.167558822344933 0.178133433743462 0.176242832328546 0.167754965181018 0.165796373348898 0.177898695228269 0.17631227951846 0.167323562482578 2 2 + 18763870 18764369 18764101.909 18763552 18764587 + gene protein_coding_gene FALSE TRUE AT2G45530.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54306.2); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.119846904177337 -1.41571718890680 0.184838988792161 1 0.315473935323706 15.2985127782576 -0.119846904177337 0.0404101472440466
AT3G21260_at 5.55356688321155 5.6489679832587 6.39233702873596 6.23711366716573 8.18032053301974 7.43276800821926 7.85201518839446 7.8525655726245 6.64548539679958 7.85984692556158 7.54924485255633 7.77300014134761 7.76422511533356 7.94300845279446 7.02088526859939 7.87571677904764 7.63573397243015 7.4456073612305 8.40252585164434 0.226754285992317 0.215657149139735 0.219480757301934 0.22418581840044 0.221630017562059 0.222733123007276 0.214829017691838 0.225562445175859 0.225093206243102 0.226931416139465 0.220239076881774 0.22113457826378 0.218138378624925 0.214829017691838 0.231575079218637 0.220528991421922 0.222146828768843 0.222171652846131 0.222001934240064 3 3|0 -|/ 7464278 7464824 7464491.5 7464026 7465100 - gene protein_coding_gene FALSE TRUE AT3G21260.1|AT3G21260.2 GLTP3 (GLYCOLIPID TRANSFER PROTEIN 3) similar to GLTP1 (GLYCOLIPID TRANSFER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G33470.2); similar to H0525C06.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66838.1); similar to OSJNBa0006B20.21 [Oryza sativa (japonica cultivar-group)] (GB:CAD40826.2); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 0.161915460330912 1.41553561720859 0.184890856722401 1 0.315256986884817 14.5246470918717 0.161915460330912 0.133154374052401
AT2G36930_at 9.18177509949817 9.2641098583236 8.63158282740932 8.81339380540175 9.59522897448453 9.30918079015555 8.84100507754051 8.94843100305124 8.57897360687416 8.42891120398539 8.41782984744627 8.5309789952153 8.35573996429846 8.50051054194412 8.402840871096 8.22315086076723 7.98704295333214 8.19381643749159 8.8182219066137 0.131133919117456 0.131443402581543 0.128263178396723 0.124201087874479 0.124432729796671 0.133370869383782 0.120828133715184 0.127389372836556 0.131940919151343 0.125515234310308 0.12660380670613 0.129066462829052 0.128932171713509 0.124956883777076 0.124269581789395 0.128150869527416 0.132369918234382 0.122056042573888 0.127050731284866 2 2|0 -|/ 15517081 15518365 15517845.222 15516977 15518593 - gene protein_coding_gene FALSE TRUE AT2G36930.1 zinc finger (C2H2 type) family protein similar to Os08g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062531.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD12942.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.126848545224726 -1.41533876448386 0.184947103733755 1 0.315021800954986 17.5406839535364 -0.126848545224726 0.0631585839041837
AT1G29110_at 2.70262420345377 2.43113139014170 2.75775117260417 2.78229862022943 2.10951380728045 2.77772175832866 2.34256055994499 2.54578938389494 2.24066538167491 2.56691829375115 2.75812660449989 2.72760274315677 2.86402059095608 2.5726546913639 2.71663042794469 2.29214804588599 2.55170812843045 2.66427471295007 2.46746238808196 0.217049288482389 0.217544341381136 0.216328367305977 0.220492552913544 0.216328367305977 0.221072203537237 0.220317949807519 0.222127457840859 0.216484143449926 0.230371142039623 0.217787173453072 0.219279401923454 0.217271317461163 0.220376669515865 0.224085613168433 0.223452182744368 0.226000488686792 0.221927854445164 0.225085485843133 1 1 + 10172679 10173025 10172820.636 10171669 10173057 + gene protein_coding_gene FALSE TRUE AT1G29110.1 cysteine proteinase, putative similar to peptidase C1A papain family protein [Arabidopsis thaliana] (TAIR:AT1G29080.1); similar to cysteine protease [Daucus carota] (GB:BAD29959.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.159837671948816 1.41529728915645 0.184958956381803 1 0.314972251886141 5.09037941081034 0.159837671948816 0.129746543530563
AT3G49320_at 2.36883228133205 1.98302896671984 2.25770069368806 2.15590059329013 1.86895055135965 1.88839019085152 1.87440792597248 2.09675458604516 2.22061018490139 2.51181470867342 1.90076947739829 1.71456237653123 1.80356284244300 1.74359403156541 2.06451154710327 2.09636352256437 2.12338396631701 2.16692196257309 1.80808613035029 0.191111333842966 0.188664082498382 0.190804401405437 0.186679210473943 0.190022474794522 0.191668396075406 0.186679210473943 0.186679210473943 0.191121196664926 0.194640022820320 0.193506529934288 0.187349002320226 0.188504983299069 0.188652586473450 0.194259841353233 0.189808571671114 0.189146715972959 0.196473347806068 0.196013871542604 3 3|0 -|/ 18299449 18300450 18300022 18299232 18301657 - gene protein_coding_gene FALSE TRUE AT3G49320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41970.1); similar to LOC496075 protein [Xenopus laevis] (GB:AAH87491.1); similar to LOC496075 protein [Xenopus laevis] (GB:AAI06661.1); similar to Os02g0686600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047772.1); contains InterPro domain Metal-dependent protein hydrolase; (InterPro:IPR003226) -0.133241029108226 -1.41495710449115 0.185056197167590 1 0.314565881928794 4.12768525221752 -0.133241029108226 0.079118993989609
AT1G14687_at 3.02580858747684 2.46807020069444 2.52123768316831 2.51284764802643 2.55131785708226 2.63481497652190 1.90703008673629 2.24906797041422 2.5864861825042 2.62710446012795 2.79485769621426 2.41767164342953 2.73104148001736 2.65031622741648 3.18550237330883 2.72775263061191 2.96035709969379 2.46182796973502 2.53317092517535 0.208752440344565 0.212451424950932 0.216378575831188 0.218755397320273 0.218372086200501 0.219953580563316 0.212945025275961 0.220168003154417 0.214837807771169 0.222217847898522 0.218454307563086 0.210282208305146 0.212881589725966 0.220057804674662 0.208752440344565 0.209080638714566 0.227345672298952 0.216032780742677 0.209853094692215 1 1 + 5048061 5048482 5048253.364 5047798 5048607 + gene protein_coding_gene FALSE TRUE AT1G14687.1 ATHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32); DNA binding / transcription factor similar to ATHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G42780.1); similar to zinc finger homeodomain protein SZF-HD2 [Glycine max] (GB:AAW22595.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) 0.150736181993423 1.41449297085148 0.185188938043563 1 0.314011552316401 5.1454842492597 0.150736181993423 0.114151057077663
AT2G25720_at 6.56148236200816 6.72674213466612 6.8686371523684 6.80731525770612 6.81071517019835 6.72459014579276 6.79514625169453 6.77563636599744 5.22767606166444 6.13619105513833 6.19901684870649 6.41507036890352 5.89444273673318 6.26381789510276 6.40183225751084 6.35824393686184 5.43720698440714 5.22175759056089 6.2625002885147 0.244336451102265 0.236447816185052 0.237896019433408 0.231564082674032 0.235944450030511 0.247453174063419 0.238884125078007 0.238244002152007 0.241577984234796 0.232895896185651 0.239486901888363 0.236401211675624 0.237092747913098 0.24388129253151 0.23144400861518 0.230690229215616 0.254229455103219 0.248559484490629 0.232652286274828 2 2 - 10962745 10963071 10962887.091 10962597 10963130 - gene protein_coding_gene FALSE TRUE AT2G25720.1 similar to hypothetical protein SDM1_56t00007 [Solanum demissum] (GB:AAU90329.1) 0.118265214250347 1.41414463493133 0.185288613919325 1 0.313595602828625 12.7084727946144 0.118265214250347 0.0341182537198349
AT3G56500_at 2.73306671256732 2.97480314877346 2.44473996073378 2.47022067747093 1.96331093623302 2.12863827604883 1.74754035051717 1.93408243458867 2.13990972277667 1.88686258228183 1.99901419125817 1.70289431732292 1.99984499192534 1.76842750976532 1.98283030184360 1.47570538562625 1.6969011071518 1.76618194737042 1.83733710534562 0.211033902678674 0.203373288986013 0.188019002486902 0.205372205373472 0.193273501038886 0.196334867912576 0.191020177581107 0.190111376293714 0.187425915471099 0.194341285875359 0.196137144004749 0.187420873174557 0.193192635860275 0.195254492988195 0.190233508439502 0.188934545979018 0.195744005546516 0.204678861769113 0.195495538437511 3 3 + 20954635 20954884 20954777.636 20954617 20954949 + gene protein_coding_gene FALSE TRUE AT3G56500.1 serine-rich protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24577.1); similar to Os03g0322200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049966.1) -0.125686933379208 -1.41403601434167 0.185319704825953 1 0.313465912390590 4.17638936503383 -0.125686933379208 0.0602510756788716
AT3G24330_at 1.41393110258409 1.83360805582751 1.89226010097895 1.92936528818750 1.95595401331843 1.58172198183216 1.84124512688148 1.67731454739152 1.79902975796026 1.88314640767099 2.33825656548386 1.90968897526803 2.19586669615900 1.71053498698131 2.01414922536214 1.82892229555189 2.19143220216711 2.33316754229029 2.09510907417633 0.188225425056494 0.195530728241059 0.203245221875113 0.189070644763683 0.186026390345560 0.185984034264198 0.19720668412422 0.190495037806144 0.192172625687095 0.197864986136481 0.185984034264198 0.190252566660452 0.194539942162803 0.189015274342945 0.192241946559252 0.187742609871566 0.185984034264198 0.190838957911674 0.190494395030394 3 3 + 8831302 8831816 8831569.909 8830343 8831845 + gene protein_coding_gene FALSE TRUE AT3G24330.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G04010.1); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G19440.1); similar to putative 3-glucanase [Zea mays] (GB:AAT42176.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.143895601231767 1.41387372228857 0.185366166538599 1 0.313272151794828 3.76118205600544 0.143895601231767 0.101562358528911
AT2G18880_at 1.92628166767097 1.93088401780059 2.40312712925231 1.87211927305659 1.49192611451026 1.87224377840432 1.72348272720740 2.09541766613077 2.26511051821949 2.01201608400046 1.73866110193872 2.18547784489154 2.23734928536746 1.82598679460047 1.33355836388718 1.65160118851460 2.34799105407514 1.66259426345637 2.27303895245610 0.191481962304619 0.190278149922277 0.188408746690964 0.197202393663915 0.189715294547118 0.200180969465867 0.191076747609806 0.189816596069826 0.189120523673589 0.199733129481077 0.199137377550073 0.189205357824150 0.198136577367537 0.197079289641778 0.187641056754613 0.189659603691607 0.195158685012451 0.193268318953226 0.187641056754613 2 2 + 8185294 8185832 8185552.091 8184078 8185870 + gene protein_coding_gene FALSE TRUE AT2G18880.1 fibronectin type III domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30200.3); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE86602.1); contains InterPro domain Fibronectin, type III; (InterPro:IPR003961) -0.159824238515238 -1.41343911215373 0.185490637158642 1 0.312753343107681 3.94258079941255 -0.159824238515238 0.130075378448437
AT1G55890_at 6.57324597608367 7.43467648668251 6.49287606947998 6.82782190509111 7.04962061202931 6.85720875447372 7.44473536925983 7.50918890670447 5.90265326071621 6.42318663816575 6.10902482309976 6.7252200227215 6.20004773906319 6.47115043041854 6.99312974795239 6.48781570432603 6.53595054639783 5.98389314220418 6.77509285863546 0.207763504699638 0.209508363646284 0.204512162830282 0.204754256826897 0.205877739522287 0.220738910266061 0.21334207288765 0.213045373550216 0.212073912158665 0.203749653500423 0.202148495083568 0.200110830784725 0.205974967833765 0.206898193235958 0.205705226127360 0.201484671113106 0.207888548186253 0.202754956256176 0.211610062736405 1 1 + 20905683 20906192 20905966.182 20905011 20906465 + gene protein_coding_gene FALSE TRUE AT1G55890.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G13160.1); similar to Os01g0785700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044469.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD28713.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.181139207865151 -1.41342703025520 0.185494098374372 1 0.312738922052188 13.4263000626566 -0.181139207865151 0.163756519560185
AT1G49100_at 1.58682775532142 1.87625983613085 1.70190497684205 1.49402819573922 1.21823474637170 1.49780304003601 1.50026719888202 1.60972650171866 1.95544156942210 2.06241181781683 1.94771521612715 1.62152483209413 1.88979185353488 1.97287497045753 1.80957115838034 1.53084716687791 2.29307461024386 2.12272386038698 1.98440493640013 0.199449636230234 0.211701095841308 0.204560873348599 0.204707956985945 0.199771120354179 0.205441733935750 0.206577644116081 0.203324064211413 0.210637068588762 0.207250094880287 0.199449636230234 0.207586598476505 0.200997188910405 0.199449636230234 0.203647265388748 0.205144572744648 0.21234700943337 0.214071646993004 0.208769475300660 1 1 - 18169819 18170451 18170054.909 18169815 18173773 - gene protein_coding_gene FALSE TRUE AT1G49100.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.133757449649751 -1.41335226041412 0.185515519610769 1 0.312649677961647 3.51026564790984 -0.133757449649751 0.080637430182255
AT4G20250_at 1.92670380635260 1.81120957833077 2.05613239840891 2.10732625003839 1.85952780379283 1.93015820453444 1.883795410004 2.03988718918568 2.10680177820623 2.01820527096772 2.21126428899478 2.08363699816076 2.34300490643317 2.00881495515043 2.12290715666018 2.21714564931117 2.47057433032526 2.20889026601288 2.00573162722561 0.163108179524891 0.158923944371755 0.167899853170189 0.165091160334186 0.159731410760580 0.160177999605770 0.159902870822653 0.16100355453631 0.162316144386109 0.164515190639038 0.161016309070233 0.163405483307427 0.162002594726830 0.162897466371711 0.167702272212677 0.170243106116661 0.167350580990916 0.167131594602898 0.160962293470475 4 4|0 -|/ 10938009 10940512 10939989.3 10938000 10940538 - gene protein_coding_gene FALSE TRUE AT4G20250.1 unknown protein 0.118793714153303 1.41331465558818 0.185526294020233 1 0.312604794624770 4.07777226892142 0.118793714153303 0.036837897229594
AT1G70290_at 10.1727841069616 10.4900608871664 9.92650451181603 10.1838323783054 10.8353857221418 10.4822496950754 10.389754671975 10.1621162658088 10.4674951629025 10.3983007362777 10.2726019698560 10.0829040960441 10.2274533681321 10.2913028894242 9.46526539630884 10.5440302232116 10.3146584100505 9.86835302015009 10.5566618324966 0.0826923955757462 0.082162746785024 0.0855699396436625 0.084209675755551 0.0868843676225395 0.0855529783926929 0.0861122481525942 0.0876933346568504 0.0968599284851164 0.0828700319535883 0.0856674477085399 0.0830130335976464 0.0854953974365565 0.0879450344272199 0.088199450906821 0.082162746785024 0.0917346712563601 0.0866224690474508 0.0846080778202961 1 1 - 26474966 26475645 26475237.818 26474743 26478449 - gene protein_coding_gene FALSE TRUE AT1G70290.1 ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. similar to ATTPS10 (Arabidopsis thaliana trehalose phosphatase/synthase 10), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G60140.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65494.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) -0.143758655860834 -1.41329587262920 0.185531675848907 1 0.312582376472451 20.6340729043427 -0.143758655860834 0.101411580979378
AT3G03420_at 5.10869571633385 4.66965724100225 4.61293148279092 4.28055571406046 4.46702761396647 4.68138081974613 4.93510046112301 4.46423480134657 2.80335233264451 3.92182248981524 3.34422463713746 3.36157201904996 3.42838332176358 3.43718016164811 3.66797000283314 3.9849929229488 4.37402419957083 3.47751468404198 4.28758166767039 0.232637910884662 0.230672447010477 0.232169740124347 0.229941630257926 0.229345923454116 0.226118782288579 0.228235233348484 0.232832237675814 0.242308864046055 0.228281527428285 0.227537188636184 0.224830472615014 0.228831420666226 0.235012926001303 0.236148604450916 0.226921100689510 0.224830472615014 0.234790020850714 0.226802514490636 3 3 + 812540 813627 813185.455 812455 814034 + gene protein_coding_gene FALSE TRUE AT3G03420.1 Ku70-binding family protein similar to Os04g0482700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053118.1); similar to H0525D09.10 [Oryza sativa (indica cultivar-group)] (GB:CAH66970.1); similar to Os12g0288900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066595.1) -0.160192116864786 -1.41309404254226 0.185589513976654 1 0.312341497317502 8.30514876813 -0.160192116864786 0.130755390560903
AT2G38090_at 1.49930732945818 1.53610975267152 1.68734585057935 1.87041371300512 0.920710085556269 1.49845248340098 1.62589683453545 1.54526565466481 1.99711409757085 2.14694306658887 2.63371082941245 3.0673175947193 2.49261717172011 2.90075939077791 2.51311312100048 2.37234496776203 2.32588649917586 2.78969335982093 2.71808904156076 0.200518577836525 0.201779494691036 0.204004044897249 0.205330030820295 0.213722162158639 0.20024887254362 0.199089052795369 0.20052671222434 0.209590719364434 0.205210098529585 0.207090917113705 0.207814063205529 0.199089052795369 0.207416612308521 0.205978786428506 0.206947478836581 0.20359268728144 0.199930464694541 0.212502415418747 2 2 + 15952657 15953824 15953553.909 15951789 15954163 + gene protein_coding_gene FALSE TRUE AT2G38090.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G58900.1); similar to MYB transcription factor [Hevea brasiliensis] (GB:AAU06309.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.146066969264039 1.41233133742573 0.185808218632145 1 0.311431434051658 3.98509393067002 0.146066969264039 0.105995935818870
AT4G01210_at 8.21203405402551 8.20169657149603 8.07057807516106 8.08247185655953 8.29926594544561 8.24970525687694 8.23677455159577 7.98462511939447 8.23517012803426 8.61022250048584 8.49262565057293 8.28623584522345 8.13098744274647 7.91031069702114 8.05877297298887 8.2106224063732 8.14804183794464 8.11738189406033 8.43659788308086 0.127610410658310 0.118722361954223 0.125563387867898 0.118722361954223 0.123381237199633 0.119164144642705 0.120285184507643 0.124486417246705 0.124467919286671 0.120557359568967 0.12983055927398 0.119908124183367 0.118722361954223 0.125318276115912 0.123916515215627 0.118722361954223 0.123406527453021 0.123499524074970 0.126509365413978 4 4 - 507778 508748 508156.091 507738 512782 - gene protein_coding_gene FALSE TRUE AT4G01210.1 glycosyltransferase family protein 1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04480.1); similar to Os10g0546200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065214.1); similar to Os01g0622000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043608.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.120617558892214 -1.41212581638471 0.185867188705439 1 0.311186261189291 16.4654951857694 -0.120617558892214 0.0445540729907848
AT4G38440_at 3.1846902337147 3.14502450467804 3.18915455722719 3.66262488981354 3.38638683681238 3.17509092989019 3.00799148956516 3.29195728774979 2.57881172799601 2.57006703703781 2.68155959946739 1.90817123437500 2.48165437802871 2.14314748652521 2.19256941014664 2.25233765572488 2.09664513973278 2.10394058791768 3.00164437273086 0.191484498205324 0.195179020092766 0.190897254077046 0.197717780411633 0.191321351683681 0.197665814324368 0.189191830560955 0.195010040081714 0.191963547961196 0.200560134555682 0.196142600329312 0.189191830560955 0.197761990362907 0.191218912025248 0.200757089803502 0.189191830560955 0.199066020289386 0.203237227914349 0.193624413814666 4 4 + 17993819 17994366 17994038.818 17989061 17994717 + gene protein_coding_gene FALSE TRUE AT4G38440.1 similar to Os06g0574400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057925.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61853.1); contains domain ARM repeat (SSF48371); contains domain FAMILY NOT NAMED (PTHR21483); contains domain SUBFAMILY NOT NAMED (PTHR21483:SF11) -0.144219717461434 -1.41211286227233 0.185870906153060 1 0.311170808592968 5.73003720738705 -0.144219717461434 0.102531063614604
AT3G60490_at 0.92210650592629 0.586340067955406 0.532981342449665 0.625304153870274 0.391055528425975 0.15105297191318 0.545638592807407 0.147414497794097 0.365095535857985 0.628323302152819 0.571653209244067 0.742282754066607 0.248764668433726 0.377514649905638 0.586619431344596 0.376503929708196 0.197731442712974 0.570009344807184 0.866459110813733 0.242090561325409 0.229053966581714 0.234945169001025 0.231942851595128 0.229634241450592 0.233678102648752 0.230370958359674 0.231576445975161 0.234426314828986 0.238619326975491 0.234250141491084 0.23523182342912 0.232074059444469 0.229053966581714 0.229704389618984 0.229053966581714 0.235195079231003 0.234584280647481 0.231950932617327 3 3 + 22360786 22361184 22361002.182 22360502 22361346 + gene protein_coding_gene FALSE TRUE AT3G60490.1 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor TINY, putative [Arabidopsis thaliana] (TAIR:AT2G44940.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE92766.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.143175402226499 -1.41204647730006 0.185889957664053 1 0.311091621303873 1.02715883016915 -0.143175402226499 0.100527670095029
AT4G22850_at 2.49696254210490 3.14530843993916 3.17398128135131 3.00496037743474 3.55342135808169 2.72798339615935 3.92333141362639 3.18233429904398 2.32803881849056 2.59137569474184 2.99149883103002 3.3941021620618 3.04388924478124 2.86467898722185 3.15696951025274 2.97450609625500 2.7275288170749 2.80950272194682 2.51032502364655 0.217668649088323 0.219332166770620 0.223671624309353 0.22308923876744 0.224593312043279 0.224941256371693 0.223018826863941 0.223202976782555 0.228907314407311 0.225039627398205 0.22318773978082 0.219729008288704 0.215719269448436 0.220671504554867 0.221507939724243 0.218276030797728 0.219641087122665 0.218688535054104 0.214697671099621 4 4 + 11994343 11995866 11995245 11994025 11996240 + gene protein_coding_gene FALSE TRUE AT4G22850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G12000.1); similar to At1g12450-related [Medicago truncatula] (GB:ABE81486.1); contains domain UNCHARACTERIZED (PTHR12677) 0.223428565139947 1.41155671375744 0.186030563537041 1 0.310507483456367 5.88699258444487 0.223428565139947 0.224260751745542
AT3G55090_at 0.612788174071535 0.40084908911145 -0.144464560461447 0.135619869570311 0.220473224241737 0.351315276307631 0.0202546824297900 0.538002520208353 0.474265701813427 0.680817489189423 -0.217601738538770 0.806339312727594 0.315737478044242 0.69926777350763 0.197080981275725 0.402242438270136 0.779899941531315 0.309152701381677 0.213526131223437 0.218923119206677 0.224981403495472 0.218923119206677 0.218923119206677 0.220675136713388 0.218923119206677 0.218923119206677 0.218923119206677 0.221544847243284 0.232136614442329 0.219441154030154 0.220869392979100 0.227339190009077 0.231429764076203 0.223625918998394 0.220690614917385 0.224005509703478 0.226774235614337 0.221838417626759 3 3 - 20427388 20427879 20427640.909 20427319 20429481 - gene protein_coding_gene FALSE TRUE AT3G55090.1 ABC transporter family protein Identical to Probable white-brown complex homolog protein 16 (WBC16) [Arabidopsis Thaliana] (GB:Q9M2V7); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39350.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G13580.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G53510.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90508.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97036.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.148462955212272 -1.41144829179713 0.186061702452606 1 0.310378187474329 0.700713768651773 -0.148462955212272 0.110612654591523
AT4G39920_at 4.20974559659568 4.00581234272562 3.68387752790936 3.63156195393827 3.56240824263811 4.26310986505768 3.94904542480243 3.70748787699227 3.63379872860266 3.29996851330564 4.10961367777943 4.17899515481662 3.7393885761443 3.94645673457394 4.36000466286113 3.62205043788859 3.94319649293747 3.79973715815172 3.43615792890293 0.185899545642326 0.186251407830997 0.186004172372348 0.185318097480822 0.188125297982758 0.186574100414758 0.186755820457092 0.183542677483467 0.199589079237597 0.186277756147932 0.184438049162195 0.187698712828878 0.187147763026032 0.18814950378453 0.188225337185818 0.183368225293972 0.196487625476426 0.188472203751931 0.190486130880922 4 4 + 18516395 18516889 18516684.818 18515743 18517268 + gene protein_coding_gene FALSE TRUE AT4G39920.1 POR (PORCINO) Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers. similar to PREDICTED: similar to beta-tubulin cofactor C [Tribolium castaneum] (GB:XP_969186.1); similar to Os02g0557000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047135.1); contains InterPro domain Cyclase-associated protein; (InterPro:IPR006599); contains InterPro domain Tubulin binding cofactor C; (InterPro:IPR012945) 0.161502612698632 1.41096039510129 0.186201881396160 1 0.3097964397465 7.58616714658137 0.161502612698632 0.133337299367578
AT1G02000_at 4.69370903382276 4.8962803820693 4.38109043228123 4.5181319050716 5.2613980311908 4.76213722246044 6.37088610390091 5.45055457389439 5.1727160318048 5.0017887381722 5.40126866524938 4.89567872378408 5.13172501475036 5.42151123083806 5.07741718310771 5.47678839353367 5.21688160038484 5.28311275320695 4.84886073720372 0.228925234431226 0.216679672176062 0.225789135800464 0.220266402034281 0.217799234704408 0.231476707108764 0.231547848209093 0.22626734311114 0.232514462462912 0.216679672176062 0.224161583925929 0.22779539800114 0.222013965019187 0.221992369265600 0.225004289967585 0.220975853111316 0.232114026041785 0.218275013409578 0.225689034401302 1 1 + 346773 347208 346992.545 345812 347592 + gene protein_coding_gene FALSE TRUE AT1G02000.1 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5), catalytic [Arabidopsis thaliana] (TAIR:AT4G12250.1); similar to GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4), catalytic [Arabidopsis thaliana] (TAIR:AT2G45310.1); similar to NAD-dependent epimerase/dehydratase; TonB box, N-terminal [Medicago truncatula] (GB:ABE85249.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) -0.195954341228761 -1.41074417567946 0.186264032484201 1 0.309538671439706 10.1646916845867 -0.195954341228761 0.186070946241445
AT4G11420_at 8.39608336096359 8.4262420867163 7.97370540232621 8.12526962147657 8.02133509785171 8.09793709472818 8.15457285879542 8.04711275803103 7.64814032211249 7.73430158732456 7.4560479044228 7.97012968173691 7.37692290700417 7.45331925906456 7.89189854398601 7.58542926977676 7.81594014772348 7.49420858703651 7.61378654916449 0.133361836371264 0.133714269961027 0.135526402409909 0.130171125475054 0.128793958955076 0.139481291528726 0.130510074193056 0.131777627736021 0.140620827781080 0.135418526742770 0.135150864712160 0.129632365794458 0.137669781882058 0.137538570134280 0.133757723990770 0.132599628867533 0.145587316030830 0.135147435977282 0.136272093654556 4 4 - 6947844 6948192 6948011.636 6947471 6952438 - gene protein_coding_gene FALSE TRUE AT4G11420.1 EIF3A (eukaryotic translation initiation factor 3A) Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Identical to Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) (TIF3A1) [Arabidopsis Thaliana] (GB:Q9LD55); similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to unnamed protein product [Homo sapiens] (GB:BAD18434.1); similar to Proteasome component re (GB:ABE82093.1); similar to Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) (GB:Q40554); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) -0.118181705318762 -1.41045395378836 0.186347482689406 1 0.309192721567116 15.8032305470083 -0.118181705318762 0.0351675011679809
AT3G47050_at 1.57085548354461 2.23460107227238 1.90978172688732 1.71933944354213 1.34416299628507 1.78492112826842 1.35523350051723 1.49679998751378 2.19415052064629 2.0622765962104 1.83262134628776 1.73125528309508 1.66273315841578 1.60059702575902 1.43416667366961 1.69101578204869 1.84375712545630 2.07143199221897 2.02664440475926 0.212935198950292 0.216373255073958 0.220724745250242 0.215729487724194 0.222177769506096 0.214439838987002 0.221248872243988 0.212935198950292 0.223927029079707 0.224644854691449 0.217275403950277 0.217585899707085 0.218416072627071 0.216064243599738 0.216725146514307 0.215040686626620 0.226178674786462 0.221191273914383 0.216965640942746 3 0|3 /|- 17339084 17339437 17339238.2 17339018 17341874 - gene protein_coding_gene FALSE TRUE AT3G47050.1|AT3G47050.2 glycosyl hydrolase family 3 protein similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G47010.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47040.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47000.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to exo-beta-glucanase [Lilium lon (GB:AAR14129.1); similar to exhydrolase II [Zea mays] (GB:AAD28356.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764)|similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G47010.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47040.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47000.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to Os03g0749500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051277.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.167865531359671 -1.40994349401599 0.186494336472711 1 0.308584358861737 3.59086415347431 -0.167865531359671 0.143868208792079
AT1G60200_at 6.10813707671554 5.49601188992542 6.14071899872561 5.789644802556 6.2582679454223 5.82291730961919 5.58973637278583 5.58381525408206 5.53770146143102 5.57744188061525 5.5620626343792 5.6773070738832 5.69705740103845 5.50529277812626 5.55563343381489 6.00465537605825 5.65034429993421 5.61353276011536 5.77925582005549 0.149087416449357 0.146072630555432 0.143325090408816 0.146512755297353 0.152632660223128 0.150468630996595 0.150166955264375 0.15259623771949 0.150861416713245 0.151858022227630 0.143325090408816 0.143325090408816 0.144594638258054 0.146866387139227 0.146718412539725 0.144015090749442 0.15296261024668 0.143968559039140 0.155059069895163 1 1 - 22204562 22208852 22206774.833 22204398 22208953 - gene protein_coding_gene FALSE TRUE AT1G60200.1 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to putative RNA-binding re (GB:BAC98582.1); contains InterPro domain Splicing factor PWI; (InterPro:IPR002483); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.167615724002518 1.40982841407947 0.186527457214160 1 0.308447227551895 11.4935072597470 0.167615724002518 0.143490971963834
AT2G24370_at 1.29981324940249 1.31767808545196 1.36776012549247 1.24821544688394 1.35626494987857 1.65180374283732 1.31505514979918 1.41004946769932 1.89579842923364 1.7322233477299 1.27439690664989 1.22018901022967 1.74989716871344 1.52542989931008 1.59689875679451 1.69727840462007 1.08301082434101 1.71398046194196 1.77742889527195 0.191888430363653 0.19163915589006 0.195968284351413 0.192060357992305 0.192480028133069 0.193490781934402 0.193286729473218 0.204891372734353 0.204160299842511 0.203327941497156 0.191762496236746 0.19163915589006 0.194431546261559 0.19163915589006 0.193366678940198 0.19163915589006 0.199917254650271 0.200868296281872 0.19163915589006 2 2 - 10377066 10377624 10377416 10377059 10380143 - gene protein_coding_gene FALSE TRUE AT2G24370.1 kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G31230.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G35380.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16760.1); similar to Protein kinase; UspA [Medicago truncatula] (GB:ABE79207.1); similar to Protein kinase; UspA [Medicago truncatula] (GB:ABE79205.1); similar to serine threonine kinase 1 [Zea mays] (GB:AAK73111.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.124409816742626 -1.40976161262837 0.186546685374787 1 0.308367629162758 3.01305606209078 -0.124409816742626 0.0576501116417697
AT3G09930_at -0.376963652119095 0.0335641692541307 -0.407337217806856 -0.312368194013604 -0.211583021223184 -0.478451816363655 -0.510414528262841 -0.0190226223389772 -0.339810152185356 -0.318359209672059 -0.558424556393526 -0.430558468386629 -0.213798056368443 -0.383148907393884 -1.04624699189225 -1.04229824599423 -0.691127360604858 -0.675270493201707 -0.709809811116495 0.182665621457842 0.182519270757835 0.186548593856187 0.185216702173715 0.184421178921371 0.178632968615695 0.178632968615695 0.178632968615695 0.191087362576156 0.192048948781762 0.184769359856002 0.179579577786359 0.19035585207876 0.183796130532017 0.193542928484605 0.185146710209130 0.188541513931842 0.186415696131723 0.182102277783335 3 0|3 /|+ 3054627 3055157 3054850.3 3053265 3055415 + gene protein_coding_gene FALSE TRUE AT3G09930.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G03610.1); similar to GDSL-lipase -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46208.1); similar to Os09g0567800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063965.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.1541709906783 -1.40954651352828 0.186608610959073 1 0.308111341265151 -0.828373206702965 -0.1541709906783 0.121167577400496
AT2G26710_at 3.06417215786450 3.09724749658811 3.35773361715672 2.75515438778900 4.8481943484351 4.89156028089024 3.80113173332038 3.64766789430532 3.96453008436817 4.45205947195346 3.66717254386102 3.82010600021640 4.60254337926481 3.08695228100111 4.94582348714881 3.82345253976851 3.58817812607965 2.79452451647255 5.51960616694065 0.193355249819305 0.188885694638659 0.195403489104140 0.19174849642677 0.195422672131542 0.198214289817858 0.189423118169187 0.194958517016376 0.189375914408623 0.195007218883573 0.188885694638659 0.188885694638659 0.189078444996526 0.195405816799469 0.189455081926967 0.189239015624622 0.193142315169276 0.188885694638659 0.197096321809783 2 2 + 11389661 11390456 11390137.636 11387584 11390690 + gene protein_coding_gene FALSE TRUE AT2G26710.1 BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1); oxygen binding Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion. similar to CYP72A8 (cytochrome P450, family 72, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14620.1); similar to putative brassinosteroid hydroxylase [Solanum lycopersicum] (GB:BAF02551.1); similar to castasterone 26-hydroxylase [Solanum lycopersicum] (GB:BAF02550.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE92604.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.146849313572981 -1.40943798439335 0.186639862347788 1 0.307982040025498 7.90110408136735 -0.146849313572981 0.108020973396570
AT4G35650_at 1.94638968974694 1.55450530659581 1.87662875433502 1.77322875038579 1.41578209871989 1.38546430004524 2.00548524163436 1.84431041481776 1.73723418818913 1.92591746124210 1.66084404550515 1.82940825569370 1.74432999398656 1.87720758615810 1.76397132211676 1.91807799842408 1.57735119374653 1.62793356486896 1.69924960561042 0.190186542289973 0.180581826821649 0.177173534780952 0.191432597086057 0.177850047592846 0.17810368544371 0.181988164458632 0.183555340597295 0.178029102208774 0.187777128126056 0.180960630046514 0.179236569347462 0.181666027089999 0.190353023902054 0.181738072294130 0.187276706453775 0.193126092726304 0.191003635230349 0.18208702611539 4 4 + 16909290 16909952 16909670 16908524 16910195 + gene protein_coding_gene FALSE TRUE AT4G35650.1 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 3) (NAD(+)-specific ICDH 3) (IDH-III) (IDH3) [Arabidopsis Thaliana] (GB:O81796); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to Os02g0595500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047314.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) -0.13123663863932 -1.4093866554459 0.186654644256399 1 0.307920889199888 3.49390310957328 -0.13123663863932 0.0756629790883656
AT2G01100_at 7.97697821034285 7.34916274900842 8.05051564020473 7.74631150518184 8.35167393981033 8.07714757763407 7.23311245407467 6.80148046466398 8.02307217792748 7.86873953713143 7.7201981702486 7.74107913281056 7.71922666633275 7.52727284128198 7.75057857162358 7.71029069700485 7.9156516427667 7.63532324138828 8.37340755712333 0.128390200871349 0.135852646965118 0.125931070547099 0.127608796684949 0.129881098325581 0.128105771484290 0.126162438265929 0.139063317699439 0.132807902410658 0.129680712660424 0.134751162967859 0.127326104250497 0.132927287549299 0.134598219657573 0.12848991331721 0.136147175156476 0.133089892078193 0.130700454427801 0.126481745793492 2 2 + 82408 82879 82660.091 81436 83290 + gene protein_coding_gene FALSE TRUE AT2G01100.1|AT2G01100.2|AT2G01100.3 similar to CXIP4 (CAX INTERACTING PROTEIN 4), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G28910.1); similar to hypothetical protein MtrDRAFT_AC144731g21v1 [Medicago truncatula] (GB:ABE92235.1); similar to Os01g0120700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041870.1) 0.171387446278338 1.40856208472309 0.186892242688148 1 0.306938738603199 15.5999773398616 0.171387446278338 0.149706118634017
AT2G27110_at 6.36419328843647 5.99232466867747 6.2657519291958 5.98196831582754 6.23584537991012 6.30616777267404 6.27821873785458 6.43035086254296 5.787657928246 5.84205951297464 5.65678184911989 5.70663399795597 5.49364219072999 5.59456879096972 5.58604171234839 5.88530708057851 5.70566776322706 5.47989709343843 5.89313020226877 0.215037070999215 0.219121105400057 0.212262795805576 0.223200937406894 0.219937718900374 0.223100773719471 0.223107113901082 0.213700263944507 0.216946654521802 0.215564161330906 0.21260587873393 0.217009472239257 0.215455411694718 0.221136083422715 0.218357523719955 0.213310735385041 0.222687340890541 0.225105157246277 0.212801296460566 2 2 - 11584294 11585480 11584933.273 11583747 11587872 - gene protein_coding_gene FALSE TRUE AT2G27110.1|AT2G27110.2|AT2G27110.3 FRS3 (FAR1-RELATED SEQUENCE 3); zinc ion binding similar to FRS5 (FAR1-RELATED SEQUENCE 5), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G38180.1); similar to FAR1; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE89491.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) -0.135610097338232 -1.40739627992933 0.187228602194595 1 0.305550795119073 11.9716110065361 -0.135610097338232 0.0859907269473214
AT2G25170_at 7.72148810943 7.86740526069799 7.51830542966496 7.24665902365814 8.04759406679766 7.60912461700377 7.67894846898646 7.58447149719678 7.78825811618047 7.66257620804382 7.5121722922818 7.70244553559541 7.46518020012193 7.44575736082894 7.75278500458946 7.55225458222982 7.37973580139095 7.75620766711188 7.77528036864072 0.206310723303159 0.190164122756010 0.197394149200347 0.198840553490703 0.188751545304864 0.191441831254396 0.198605740259135 0.195634652323862 0.211998497173895 0.184505083021188 0.190302802208442 0.199601482516753 0.186997519377132 0.210628208528488 0.204178330453081 0.195373806718628 0.209972317666821 0.197784749423656 0.187927584818858 2 2|0 +|/ 10730123 10730719 10730452.7 10721485 10731065 + gene protein_coding_gene FALSE TRUE AT2G25170.1 PKL/SSL2 (PICKLE, SUPPRESSOR OF SLR2) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. Identical to CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-) (Protein GYMNOS) (PKL) [Arabidopsis Thaliana] (GB:Q9S775); similar to chromatin remodeling factor, putative [Arabidopsis thaliana] (TAIR:AT4G31900.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (japonica cultivar-group)] (GB:BAD72546.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa] (GB:AAL47211.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (indica cultivar-group)] (GB:AAL47203.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Protein of unknown function DUF1086; (InterPro:IPR009462); contains InterPro domain Protein of unknown function DUF1087; (InterPro:IPR009463); contains InterPro domain Chromo; (InterPro:IPR000953) -0.139439237616452 -1.40656168917071 0.187469712725694 1 0.304557647057303 15.3156773274164 -0.139439237616452 0.0941940432312248
AT2G22240_at 8.30609163361944 8.75067561347066 8.14075215548493 8.5052499228648 9.10666729483465 9.36826777327955 10.0254619116875 10.0614050399146 8.08656372104105 9.24321471961278 9.04846444973566 8.95616907495044 9.14846280624953 8.99504572207972 8.20528106093361 9.46455273377934 9.3886475829966 8.87786556239634 9.0687921089925 0.152212053294662 0.145912633676638 0.151289808952658 0.15017795467717 0.145912633676638 0.150820330873232 0.158448285001483 0.154926311399780 0.163312328462902 0.145912633676638 0.147002933081878 0.145912633676638 0.149618011152380 0.149808902119459 0.155582501721862 0.145912633676638 0.158849745621961 0.161178961100096 0.147656700920432 2 0|2 /|- 9459012 9459653 9459326.5 9458685 9461174 - gene protein_coding_gene FALSE TRUE AT2G22240.1|AT2G22240.2 inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis Thaliana] (GB:Q38862;GB:Q9SIE2); similar to MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase), inositol-3-phosphate synthase [Arabidopsis thaliana] (TAIR:AT4G39800.1); similar to inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative [Arabidopsis thaliana] (TAIR:AT5G10170.1); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q96348); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q9S7U0); similar to myo-inositol 1-phosphate synthase isozyme-2 (GB:AAC49172.1); contains InterPro domain Myo-inositol-1-phosphate synthase, GAPDH-like; (InterPro:IPR013021); contains InterPro domain Myo-inositol-1-phosphate synthase; (InterPro:IPR002587)|Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis Thaliana] (GB:Q38862;GB:Q9SIE2); similar to MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase), inositol-3-phosphate synthase [Arabidopsis thaliana] (TAIR:AT4G39800.1); similar to inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative [Arabidopsis thaliana] (TAIR:AT5G10170.1); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q9S7U0); similar to myo-inositol-1-phosphate synthase (GB:AAA85390.1); similar to myo-inositol 1-phosphate synthase isozyme-2 (GB:AAC49172.1); contains InterPro domain Myo-inositol-1-phosphate synthase, GAPDH-like; (InterPro:IPR013021); contains InterPro domain Myo-inositol-1-phosphate synthase; (InterPro:IPR002587) -0.147318327732844 -1.40639132039746 0.187518963856554 1 0.304354959505993 17.9381137384890 -0.147318327732844 0.109482244423256
AT2G14100_at 1.64806856481556 1.78451999366152 1.91657448860923 1.86115755522198 1.45895461926476 1.75928614715904 1.62498351512818 1.38576010521843 1.69624014445667 1.77189963955841 1.61137081275122 1.24340417996983 1.10412771995285 1.57019878516933 0.901332390562852 1.19611689239538 1.32213653926275 1.30266679030752 1.56525715625807 0.186064588318725 0.184204661108212 0.194601268090075 0.181345260621805 0.180274991025848 0.199693707971944 0.183202962208699 0.182693501300727 0.200841592410423 0.191103926977582 0.182890478579806 0.184268103445631 0.186375887330901 0.180819847208118 0.184234048548871 0.189074718861779 0.189362727395988 0.187871281716313 0.180274991025848 2 2 - 5941815 5942390 5942026.818 5941638 5943453 - gene protein_coding_gene FALSE TRUE AT2G14100.1 CYP705A13 (cytochrome P450, family 705, subfamily A, polypeptide 13); oxygen binding a member of the cytochrome P450 family similar to CYP705A23 (cytochrome P450, family 705, subfamily A, polypeptide 23), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20140.1); similar to CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20100.1); similar to heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT3G32047.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.129109779218378 -1.40636755867620 0.18752583389054 1 0.304326691511109 3.15952224557859 -0.129109779218378 0.0711666965051224
AT4G33360_at 6.81271612346017 6.62545632150196 6.07769959492769 6.34098452927742 5.29554809399301 5.02535872301481 4.32723427166585 4.60988952762714 5.40163304039735 4.86573232172137 5.55276986493274 5.91500851029501 3.95634396309286 5.35582912422536 6.12743118318188 4.52462702843282 3.88341082275057 5.37852597513329 4.44808401887549 0.214206366385502 0.227132155695549 0.218277608030101 0.213952304302494 0.212616157119713 0.232458851569634 0.218730817617376 0.214345859068561 0.236749101064624 0.217207581979091 0.212616157119713 0.212616157119713 0.225850610788226 0.220551709382797 0.222860817211552 0.212616157119713 0.240147636882421 0.228222816339492 0.218777931947349 4 4|0 -|/ 16068015 16068715 16068394.1 16067675 16069377 - gene protein_coding_gene FALSE TRUE AT4G33360.1 terpene cyclase/mutase-related similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09490.1); similar to Putative dihydroflavonal-4-reductase [Oryza sativa] (GB:AAK92621.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.136333594790141 1.40628299053619 0.187550286112775 1 0.304226088092360 10.6353074495187 0.136333594790141 0.0877783818649566
AT3G51320_at 2.65456661947124 2.93687608039546 2.93589283466660 3.01367945579884 2.68769772738494 2.68927341149463 3.09192580128329 3.23846349504145 2.53969158789260 2.89690706710473 2.37658824267499 2.6337381801945 2.66042918828539 2.49711220129277 2.69871327112739 2.7582274725533 2.90879963956709 2.47206662956947 2.73669590455732 0.210027468207426 0.207692811396922 0.211530902900651 0.214225354457702 0.210874720646526 0.212721998171476 0.210672516128543 0.209729573580807 0.210915433736206 0.220837128843281 0.212176073441308 0.2119160014709 0.216185998898585 0.212741788107451 0.208274209477297 0.210515023578494 0.213491743428195 0.210356246838737 0.210591754475831 3 3 - 19060833 19061347 19061128.727 19060581 19062544 - gene protein_coding_gene FALSE TRUE AT3G51320.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT3G62890.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93444.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.123772154202521 -1.40627022787161 0.187553976571678 1 0.304210905801728 5.58111736469689 -0.123772154202521 0.0566671899303897
AT1G31790_at 3.06071064212556 3.21983616085808 3.34904751459363 3.33944265322153 3.48844535663308 3.43093495412405 3.22752566000038 3.05000248050115 2.70759138866084 3.16497331179696 2.54838830335709 1.96147836762126 2.59146132867274 2.56426989923093 2.38762524377063 2.47245901840355 3.01865335497347 2.24267929198165 3.05197523314982 0.230752334638059 0.215417033558517 0.221004275086748 0.221031832649355 0.223022138210895 0.232963074727664 0.224028966258859 0.220567218174776 0.219527035485241 0.225084539671282 0.225104793615041 0.23596732534477 0.221490371452335 0.228405821007338 0.221010539392036 0.215417033558517 0.222269714736738 0.229583227316652 0.215417033558517 1 1 - 11394736 11395295 11395053.909 11394671 11395999 - gene protein_coding_gene FALSE TRUE AT1G31790.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G24000.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE84669.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.11951045488134 -1.40559387194916 0.187749639587801 1 0.303406453479658 5.99485492552582 -0.11951045488134 0.0424725328489567
AT2G36300_at 7.0945669257255 7.66502267158363 7.70621435380903 7.97353245741486 7.97527130367756 7.40928938129905 7.36972482726567 7.80450226675386 6.95330934572085 6.82758813002213 7.12975810079433 7.14469094151973 7.05944913111027 6.80418152472324 6.99872255085402 6.76029333301176 6.92772468960477 6.6797758959385 6.79650744010803 0.188594519927740 0.186495049758332 0.188999008564567 0.188699557025409 0.186430999091138 0.198196406083475 0.182848749273962 0.180560140035178 0.183854545086169 0.193917536454050 0.188192844416963 0.179867483945328 0.183339231741601 0.187252378330554 0.184245686048879 0.178818544937591 0.199576511034523 0.180446985873809 0.193493708204553 2 2 - 15220443 15221000 15220651.182 15220119 15221351 - gene protein_coding_gene FALSE TRUE AT2G36300.1 integral membrane Yip1 family protein similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT3G52760.1); similar to Protein of unknown function DUF649 [Medicago truncatula] (GB:ABE77839.1); contains InterPro domain Yip1 domain; (InterPro:IPR006977) 0.180781125106098 1.40554609791471 0.187763466640521 1 0.303349641180373 14.5233702698886 0.180781125106098 0.164742739595009
AT2G34710_at 5.36482263787479 5.52995824032599 5.7362209448415 6.08917398441495 6.48845108091058 6.26520661365284 6.88413639268038 6.91782381953304 6.41023002717801 7.15425448630738 6.2690549076691 6.84308839529781 6.89657348789802 6.56025503073805 6.26311688622349 6.94973489393646 6.59333908153903 6.4355841749519 6.94212053864079 0.177727691796266 0.179266775672235 0.180721841620092 0.183381543097949 0.185356121253027 0.180910386407127 0.187015266722766 0.186425912039703 0.182441810825168 0.183272418907421 0.182464573598294 0.182884216674829 0.186309504558719 0.184236137621884 0.181425240255092 0.182285995418035 0.188911134941025 0.177727691796266 0.177727691796266 2 2|0 -|/ 14646646 14647352 14647046.5 14646402 14651352 - gene protein_coding_gene FALSE TRUE AT2G34710.1 PHB (PHABULOSA); DNA binding / transcription factor Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA. similar to PHV (PHAVOLUTA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G30490.1); similar to REV (REVOLUTA), DNA binding / lipid binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60690.1); similar to ATHB-8 (HOMEOBOX GENE 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G32880.1); similar to class III HD-Zip protein 3 [Populus trichocarpa] (GB:AAX19052.1); similar to class III HD-Zip protein 4 [Populus trichocarpa] (GB:AAX19053.1); similar to PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris] (GB:AAS66760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Chitin binding Peritrophin-A; (InterPro:IPR002557) -0.131806888371120 -1.40515003106254 0.187878131773881 1 0.302878692894034 12.8779134016078 -0.131806888371120 0.0779358264262862
AT1G50530_at 0.736692357182187 0.494758547092055 1.11026312129230 0.874678526766788 0.494457521441404 0.83267386256498 0.502833084181767 0.778467850460677 1.09064867064655 0.918596091265559 0.983048085177235 0.668301024203573 0.769226047646367 1.05403943634506 0.562278431812003 0.796793638696308 1.15103479244016 0.663060946443052 0.243773309440425 0.208428010196219 0.211446613255976 0.211407192224691 0.215102617453941 0.220354349184481 0.208428010196219 0.211629662735129 0.212290784791114 0.218600678796136 0.213049786958708 0.219536298225244 0.210491707574262 0.208428010196219 0.225524866264986 0.208428010196219 0.209760772103910 0.217183442300984 0.226134955518286 0.218736564723608 1 1|0 -|/ 18724985 18725362 18725131.111 18724880 18725397 - gene protein_coding_gene FALSE TRUE AT1G50530.1 similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G50570.2) 0.139898537424243 1.40481071275190 0.187976414581944 1 0.302475292577138 1.51909252093759 0.139898537424243 0.0954780216503267
AT1G12100_at 1.76350869657151 1.365716320291 0.95456808972968 1.34813291431638 1.38208953457635 1.37597286490383 1.06262026685034 1.27273708606890 1.98459312083157 1.73873373254809 1.81335411203022 1.78821005975338 1.57611252917699 1.67149265063367 1.72477259265910 1.65780621112861 1.29181449978502 1.31705568996719 1.65267642156119 0.222299458886574 0.234850971727032 0.225282113855397 0.224786645012709 0.22026234825583 0.229704316192741 0.228587002852417 0.22026234825583 0.229043796657058 0.228321822417979 0.221432134977581 0.224738866327592 0.226127625192536 0.233640236702965 0.227272323018760 0.228484476353487 0.236131301774261 0.227157514304873 0.223597512157673 1 1 + 4095514 4095801 4095680.182 4095496 4095843 + gene protein_coding_gene FALSE TRUE AT1G12100.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12470.1); similar to arachidonic acid-induced DEA1 [Capsicum chinense] (GB:CAI51313.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.143939270034525 -1.40471288898550 0.188004757064865 1 0.302359006357496 3.01420741405786 -0.143939270034525 0.103445375797479
AT1G68320_at 0.496334142273012 0.985967209616167 1.31729621368062 1.08190803772259 1.06520545192125 1.04590296493863 0.94584165397849 1.26207287717308 0.790494747097709 1.09519014137315 0.915826991471557 1.04359463746694 1.13843149501783 0.829014990846881 0.60995677570583 1.22204093725501 1.34573714689087 1.16209979789799 0.948926501720015 0.214438020169273 0.213732629893722 0.213707447260805 0.214434195586107 0.224085266298236 0.218212883030527 0.22993652152766 0.220720729053370 0.225667411580827 0.219823468662409 0.227604025807663 0.228269228911013 0.214997588248837 0.217425008596927 0.214745218532570 0.222605131809571 0.215605704037513 0.218762295315458 0.222854622984611 1 1 + 25608046 25608464 25608229.909 25607505 25608759 + gene protein_coding_gene FALSE TRUE AT1G68320.1 MYB62 (myb domain protein 62); DNA binding / transcription factor putative transcription factor: R2R3-MYB transcription family similar to MYB116 (myb domain protein 116), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G25340.1); similar to MYB7 [Malus x domestica] (GB:AAZ20430.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.146745789738870 1.4042527267235 0.188138128193281 1 0.301812069330984 2.01417022389602 0.146745789738870 0.108835136995939
AT1G53390_at 6.7399501389965 6.83814085321922 6.52803144383426 6.4710482965553 7.28828344796943 6.46914984017027 6.1058376843566 6.04931713858975 6.45880028749079 6.32911546440287 6.70381393090664 6.8334701725704 6.5278734330279 6.6806537018622 6.3506625247667 6.52282358599212 5.88865107823155 6.45856247320557 6.46600453129263 0.187652202710453 0.178899659590968 0.181761244339641 0.183221963041985 0.178711850627711 0.192106451290888 0.193658113690802 0.181715310194389 0.193294405934713 0.18531402684257 0.182591494759166 0.178711850627711 0.178711850627711 0.190313330437361 0.194345960257791 0.178711850627711 0.199366706709901 0.196265915352915 0.184653268568466 1 1|0 +|/ 19926591 19927209 19926855.7 19921715 19927475 + gene protein_coding_gene FALSE TRUE AT1G53390.1 ATPase, coupled to transmembrane movement of substances similar to ATNAP12 (Arabidopsis thaliana non-intrinsic ABC protein 12) [Arabidopsis thaliana] (TAIR:AT2G37010.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G60740.1); similar to hypothetical protein LOC_Os11g22350 [Oryza sativa (japonica cultivar-group)] (GB:AAX92830.1); similar to Lipocalin; AAA ATPase [Medicago truncatula] (GB:ABE87825.1); similar to ABC transporter family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47708.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.166828619091711 1.40345542271862 0.188369403469844 1 0.300864697409389 13.018113500611 0.166828619091711 0.143443729457703
AT4G19550_at 1.97782616935535 2.25454169169171 2.12984673812165 2.41925280111037 2.10768150277957 2.36551754667975 1.93770621492298 2.21939958473450 2.56337570267962 2.28456251769878 2.57581822952311 2.12411015185998 2.71569444090709 2.68005062352779 2.52272783895246 2.00568833130275 2.52550537104866 2.29387940523016 2.07886808398873 0.200636926552960 0.200088801611710 0.20196935814452 0.205180897143130 0.199471305203184 0.203915038884633 0.205611635009909 0.214178108534066 0.206961392128400 0.197520880769634 0.197520880769634 0.206057066953274 0.19843012586734 0.199814351099271 0.197520880769634 0.197599303300425 0.201345625492410 0.197520880769634 0.200104105998992 4 4|0 -|/ 10659477 10660270 10659859.167 10659391 10661109 - gene protein_coding_gene FALSE TRUE AT4G19550.1 transcription regulator/ transcriptional activator/ zinc ion binding similar to RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G09360.1); similar to Os12g0133900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066092.1); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Brf1-like TBP-binding; (InterPro:IPR011665) 0.139852548125826 1.40297821046030 0.188507943720513 1 0.300297836475126 4.54615639809101 0.139852548125826 0.0957538101919963
AT1G25470_at 4.57133859976862 4.73763347090427 4.6303211560378 4.71945097766708 6.12986687405243 4.62869333876715 4.93809396268772 4.44843932498239 3.87393077051826 4.14245209990603 4.14891144088867 4.1019870037747 4.33963473978914 4.16038333274516 4.23522853745743 4.5106830899952 3.99866852658117 4.00082323133269 4.04304986199926 0.241795503823788 0.241795503823788 0.250104328913167 0.252500641676599 0.247987947170254 0.265085708504629 0.243544105640563 0.241795503823788 0.247928752945309 0.241795503823788 0.242743835449597 0.242289354259187 0.246740655548745 0.251032109341754 0.242507152309065 0.243532005912262 0.268684181924667 0.247982623783749 0.243375720271371 1 1 - 8944903 8945408 8945156.364 8944596 8946615 - gene protein_coding_gene FALSE TRUE AT1G25470.1|AT1G25470.2 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G68550.2); similar to Pathogenesis-related genes transcriptional activator PTI6 (PTO-interacting protein 6) (GB:O04682); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.260217912029015 1.40286097544359 0.188541991530559 1 0.300158597487371 8.95390516242262 0.260217912029015 0.275199455131404
AT1G59510_at 2.77417945821949 3.38390299525611 3.10769891251326 2.98420329282995 3.08779820999716 3.15995125358574 3.12241202646496 3.44483776871921 3.20614415847479 3.42800517568952 2.89977698912324 2.92668263440760 3.37087847257152 3.23217398965963 2.88878538041763 3.19585562439403 2.92912159865627 3.03792781314589 3.17975710712496 0.222883823175993 0.218782935490549 0.222833781630684 0.217230386036917 0.224461367381117 0.223399056419287 0.225547350310172 0.221304550652443 0.221080058239156 0.22214410882854 0.228626084548897 0.217585129169459 0.217230386036917 0.218757170204255 0.224165426326168 0.217230386036917 0.230986857593378 0.228864334864353 0.235588102855791 1 1 + 21864037 21864549 21864306.727 21863260 21864741 + gene protein_coding_gene FALSE TRUE AT1G59510.1 CF9 Encodes CF9. similar to ATPP2-A10 (Phloem protein 2-A10) [Arabidopsis thaliana] (TAIR:AT1G10150.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85053.1); similar to Os03g0769900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87321.1); contains domain SUBFAMILY NOT NAMED (PTHR21477:SF2); contains domain FAMILY NOT NAMED (PTHR21477) -0.153785989616428 -1.40219857570610 0.188734465314409 1 0.299372017212901 6.29884921964493 -0.153785989616428 0.121899584888335
AT4G37200_at 10.2448380740636 10.3180773564786 10.5385639677116 10.4128261695039 10.5974772793036 10.3729914418374 10.8542998028717 10.8941843948647 10.7034259953762 10.5541115718041 10.6805150846020 10.3876268644640 10.5492531451057 10.5976302738270 10.0563406087282 10.7372690552401 10.2317960169164 10.4706928481944 10.5640695286689 0.105875912401566 0.103418935281510 0.102277524323803 0.104040511059358 0.104215371304473 0.108025932046305 0.109369040105910 0.103156289218445 0.107359055849841 0.102277524323803 0.103752686174651 0.104713983299911 0.104301614691837 0.110191576705955 0.105326221627584 0.103882740870698 0.118085040925275 0.108708824995796 0.103541708520153 4 4 - 17509833 17510835 17510215.545 17509615 17511358 - gene protein_coding_gene FALSE TRUE AT4G37200.1 HCF164 (High chlorophyll fluorescence 164); thiol-disulfide exchange intermediate Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen. similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to thioredoxin family protein [Musa acuminata] (GB:ABF70019.1); similar to Os03g0767500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051387.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.120348535314423 -1.40172444469720 0.188872335330450 1 0.298809152941091 21.0647037370383 -0.120348535314423 0.0468075784660942
AT1G26450_at 0.750371726234556 0.809041582235087 0.859850391316936 0.636647277142872 0.200093804221856 0.278317113001444 0.355427236353935 0.739180083359673 0.82730039108778 0.390777215415989 0.732117088881551 0.703471395625522 0.714034165363624 0.514662909808367 0.743250462822537 0.469480589423628 0.495255976627652 0.634218924434838 0.940808217995187 0.184930541071578 0.184085698223167 0.190818902948418 0.192628589163612 0.186578620459946 0.184544013613366 0.183920317819176 0.183956174627112 0.190773937710379 0.189795993215352 0.194329102253017 0.186040610019493 0.192176024005284 0.191101796648088 0.189595947605154 0.184961377216635 0.200257162986102 0.195236823937507 0.186416180026984 1 1|0 -|/ 9148996 9150001 9149408 9148697 9150237 - gene protein_coding_gene FALSE TRUE AT1G26450.1 beta-1,3-glucanase-related similar to beta-1,3-glucanase-related [Arabidopsis thaliana] (TAIR:AT1G69295.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); contains InterPro domain X8; (InterPro:IPR012946) -0.131797589833944 -1.40169784815890 0.188880071706086 1 0.298777582648406 1.25133617537819 -0.131797589833944 0.078667938919542
AT2G39380_at 1.16373823611071 1.22318272196572 1.16097180298126 1.32741806765399 2.02985424721543 1.43339605510419 1.61041611628336 1.27857498034086 1.47040973590356 1.40990863336048 1.42964270413234 1.57100189990299 1.92701355837550 1.37208032180218 1.27383958812555 1.58355794858479 1.56868025802466 1.66589043447524 1.35072390116889 0.218442368727182 0.219617837362563 0.229895610624127 0.219166648889253 0.223165408886777 0.218442368727182 0.218442368727182 0.221049570359044 0.222913794925368 0.222089331055236 0.222738978946524 0.22082187010892 0.220814102646875 0.218674651910531 0.218442368727182 0.219511873818648 0.222133227005105 0.218442368727182 0.218442368727182 2 2 - 16454190 16454706 16454486.091 16454084 16456161 - gene protein_coding_gene FALSE TRUE AT2G39380.1 ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70H1 (exocyst subunit EXO70 family protein H1), protein binding [Arabidopsis thaliana] (TAIR:AT3G55150.1); similar to Exo70 exocyst complex subunit [Medicago truncatula] (GB:ABE84275.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.153773972631910 1.40148591859927 0.188941727105877 1 0.298526034958307 2.88309940978471 0.153773972631910 0.122015064645449
AT3G62090_at 1.21808488088358 1.34989707069661 1.58511212189735 1.41623597427586 0.987470996044272 1.44528535985598 0.686433307308752 1.28622430724792 1.44328174109544 1.34380571321196 1.55572711890274 1.12717270868239 1.10422962450212 1.36653343340748 1.43808320860832 1.49483266566345 1.44990725548255 1.85035460760532 1.18207449127795 0.199434082615453 0.200235036760711 0.201649054120971 0.206301263227543 0.200230719323298 0.210302476844008 0.201108228416882 0.204762020637032 0.208420318751532 0.203263021906717 0.199434082615453 0.201267490274977 0.205351322833758 0.200241068108113 0.200122576459614 0.199434082615453 0.207120695927394 0.208326076545696 0.205769873760259 3 3 - 23000122 23000908 23000295.091 22999522 23001684 - gene protein_coding_gene FALSE TRUE AT3G62090.1|AT3G62090.2 PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2); transcription factor|PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. similar to PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46970.1); similar to putative BP-5 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81566.1); similar to Os01g0286100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042775.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.161833658739584 1.40120642377204 0.189023064768036 1 0.29819433021617 2.62004753213558 0.161833658739584 0.135738946778941
AT3G45510_at 1.49951206730108 1.65738584928760 1.54046063375632 1.77789407663213 1.33736312478227 1.23539089201589 1.57146915045811 1.72043290993328 1.54105182037526 2.00707023305259 1.66953220168031 1.57814372882619 1.81905912076343 1.65016370419740 1.39668371476160 1.68298811651499 1.37319508866231 1.80325107096784 1.64188189595993 0.181665000449455 0.182559944526013 0.186314074684831 0.187450685339103 0.187625691370838 0.187030871298971 0.184661687749175 0.181055664625261 0.202150913175167 0.180321018017718 0.192956520617278 0.180667229875292 0.185300319390848 0.180873451626727 0.184027850836348 0.180321018017718 0.200021020542060 0.182896563811199 0.187222847656915 3 3|0 -|/ 16701792 16702464 16702164.667 16701775 16702713 - gene protein_coding_gene FALSE TRUE AT3G45510.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G45480.1); similar to zinc finger family protein, putative [Solanum demissum] (GB:AAT40530.2); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.123898517807100 -1.40108881446253 0.189057299850321 1 0.298054764589388 3.21830279290051 -0.123898517807100 0.0584010927221833
AT1G16640_at 1.62514780950023 1.52406024763816 1.36396523348483 1.40430463547172 1.18212774986567 1.33949388899049 1.09033450174511 1.46988705224663 2.18060796215682 1.79176371215296 1.92796674516698 1.98195007146681 1.79610096444657 1.85985628142118 2.01351110637024 1.61682443716606 2.25148638939916 1.91669830708142 2.25217058042102 0.176261739224097 0.177721025927751 0.184101734571264 0.188485555244848 0.176065021840365 0.186457647896794 0.177200187677008 0.184157967072809 0.186755850763645 0.176585763653981 0.180592816977361 0.181055003050293 0.17804982716444 0.185583288917398 0.187406701406378 0.176065021840365 0.183635199198837 0.176221442032833 0.192315510114795 1 1|0 +|/ 5686785 5687496 5687273 5686596 5687693 + gene protein_coding_gene FALSE TRUE AT1G16640.1 transcriptional factor B3 family protein Identical to Protein At1g16640 [Arabidopsis Thaliana] (GB:Q9FX77); similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G06220.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE81218.1); similar to Os01g0723700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044109.1); similar to Os11g0197600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067431.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.129591328129078 -1.40108021897839 0.189059802128202 1 0.298044564733462 3.37261349289706 -0.129591328129078 0.0735574345605922
AT1G02460_at 4.52966239767232 4.5852369932617 4.0772944135598 4.37700069949694 3.45727698806267 3.92607731297489 3.36218803956546 3.81736553049115 3.62621485285672 3.03776391055187 3.53007692254155 4.57623600742447 3.43480939387535 3.91016466153881 3.61756171543626 3.70784112000301 3.30578414592376 3.9928711347384 3.33978559314432 0.211455840381672 0.211687711971744 0.210475014974504 0.219795759883835 0.200617022674402 0.212549068283217 0.20195296092724 0.203704642685283 0.201959079024438 0.206389516563229 0.202904746395242 0.202968549059075 0.205524765435307 0.204744308662789 0.200617022674402 0.201206732660688 0.221376434226126 0.204101329758575 0.202517484061054 1 1 - 504928 505551 505209 504673 507204 - gene protein_coding_gene FALSE TRUE AT1G02460.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G01890.1); similar to Ribosome-binding factor A; Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE78820.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.155314566055073 1.40102597483351 0.189075594077687 1 0.297980196728237 7.5635159251537 0.155314566055073 0.124776215238463
AT3G19080_at 2.01296024896356 2.34002199964224 1.98214937905062 1.88003975665676 2.29026002555731 2.07624807604431 2.94725171994420 2.32219799732971 2.93272394977490 2.9942802841052 2.99230668271913 3.1336344286002 2.70123360324015 3.01136594848593 3.00732529445215 2.95597147255697 2.9430758326205 2.88114424606076 2.83335049881012 0.189471234151981 0.184805735208100 0.190985720236847 0.200324419757395 0.195846561964147 0.188407643338339 0.187963713049381 0.194473106910587 0.186362137165503 0.184566243553435 0.190731281792761 0.186966136426226 0.186878599187138 0.189830285214727 0.186696815146467 0.187006818845598 0.198673808925896 0.189790790468203 0.191157563644667 3 3|0 +|/ 6597691 6598647 6598193.9 6596088 6598673 + gene protein_coding_gene FALSE TRUE AT3G19080.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G49520.1); similar to SWIB complex BAF60b domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99032.1); contains InterPro domain MDM2 oncoprotein; (InterPro:IPR010984); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.157647368890386 -1.40088510745999 0.189116609596030 1 0.297813046342888 5.16807886680961 -0.157647368890386 0.128793721297741
AT4G19350_at 7.11703414941687 7.3271050043984 7.17278434688728 6.98739800148068 7.84710888121912 7.27771933474085 7.53215255668742 7.2128031530207 6.75206677767453 6.81159911372309 7.20723288635841 7.15729119302515 7.40274633440754 7.23369637352885 6.481905245327 6.98049910804785 7.33549251807609 6.55807082791057 6.71696877557938 0.183092055619766 0.185247337194602 0.191146722822431 0.186643565232785 0.183830099005935 0.181943067354223 0.182878957072888 0.184796752339574 0.207663325206994 0.199018718893562 0.180893696245877 0.178622864830323 0.182668487894581 0.187942626919731 0.191400793597492 0.178622864830323 0.187595281362125 0.193603420223862 0.192407704016460 4 0|4 /|- 10562226 10563223 10562562.375 10562034 10563768 - gene protein_coding_gene FALSE TRUE AT4G19350.1 EMB3006 (EMBRYO DEFECTIVE 3006) similar to Os08g0162500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061059.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99789.1) 0.154192090188659 1.40045929814092 0.189240635502721 1 0.297307857919592 14.2116773617285 0.154192090188659 0.122940249736495
AT3G09440_at 9.17056786753318 9.48353479383162 9.36220011135131 9.4721977687379 8.47082425499889 8.66808703642818 8.93636254567262 9.59327469111424 9.1100901157107 8.5910082809779 9.72776871029765 9.55781160759794 9.15918572572159 9.37549997059894 9.36303058639018 9.05071150035452 8.84695785356831 8.93550850585696 8.1910396889805 0.141050967948988 0.148326010925828 0.149161670991818 0.150655828573743 0.155291373261758 0.151035711384936 0.154738494012245 0.150999428270411 0.163103474844691 0.141733090991347 0.145412425038323 0.140951251343354 0.142220665241067 0.142160942221843 0.144929450277867 0.143712296584891 0.149641608915535 0.141728176559860 0.154862825984910 3 3 - 2903451 2903976 2903733 2903205 2905730 - gene protein_coding_gene FALSE TRUE AT3G09440.1 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G02490.1); similar to HSC70-1 (heat shock cognate 70 kDa protein 1), ATP binding [Arabidopsis thaliana] (TAIR:AT5G02500.1); similar to 70 kDa heat shock cognate protein 2 [Vigna radiata] (GB:AAS57913.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABD32895.1); similar to heat shock cognate protein HSC70 [Brassica napus] (GB:AAB88009.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 0.159369465333195 1.40008960052685 0.189348373204546 1 0.296869324813684 18.0860171350941 0.159369465333195 0.131850614486715
AT1G08100_at 1.22631076605959 1.00498165846321 1.30111110521533 0.666126853603265 0.797620609871302 1.16552831769858 1.05000077948101 1.34176406776345 0.439491101175554 0.83302282085941 1.58045976086939 1.05779467631799 0.860992784599308 1.13225461185221 1.21980333188719 1.15307928430878 0.991701570288602 1.34448845083766 0.71799172255051 0.215200367117106 0.215200367117106 0.227543160675081 0.220269261216809 0.219847467661305 0.215200367117106 0.216521119811564 0.224646803430610 0.22042447829717 0.22099392683756 0.221973213874201 0.220593332331409 0.215200367117106 0.219011687882451 0.224598318736544 0.219983533268297 0.218117583377865 0.225637045208096 0.221960428541157 1 1 - 2527282 2527807 2527597.909 2527167 2529117 - gene protein_coding_gene FALSE TRUE AT1G08100.1 ATNRT2.2 (Arabidopsis thaliana high-affinity nitrate transporter 2.2); nitrate transporter Encodes a high-affinity nitrate transporter. similar to ATNRT2:1 (Arabidopsis thaliana high affinity nitrate transporter 2.1), nitrate transporter [Arabidopsis thaliana] (TAIR:AT1G08090.1); similar to ATNRT2.4 (Arabidopsis thaliana high affinity nitrate transporter 2.4), nitrate transporter [Arabidopsis thaliana] (TAIR:AT5G60770.1); similar to ATNRT2.6 (Arabidopsis thaliana high affinity nitrate transporter 2.6), nitrate transporter [Arabidopsis thaliana] (TAIR:AT3G45060.1); similar to high-affinity nitrate transporter [Brassica napus] (GB:CAC05338.1); similar to high-affinity nitrate transporter [Prunus persica] (GB:BAD02939.1); similar to nitrate transporter [Populus tremula x Populus tremuloides] (GB:CAG26716.1); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.165451165498478 1.39973601537691 0.189451463676956 1 0.296449976679731 1.98471736496878 0.165451165498478 0.141933678418278
AT3G56600_at 1.63904483608899 1.66603285481903 1.73531575573642 1.64830669713079 1.44707504412421 1.47889139850016 1.11150328622532 1.83509218745984 2.19478226866919 1.61562070671900 2.1903855490335 1.60497269878426 1.50385965933799 1.36439468443665 1.42248558494307 1.18442435775421 1.37293418598997 1.82169105124266 1.84371209830034 0.199294010448280 0.198729628968770 0.194595269265026 0.200786809748567 0.199094849232881 0.195904105502354 0.196662227159077 0.195472286560867 0.205895941134054 0.200523417983666 0.198103404782983 0.193733056775556 0.197062938919163 0.193810964297737 0.193733056775556 0.196773772953768 0.193733056775556 0.196327921307358 0.196945014754862 3 3 + 20981082 20981606 20981382.273 20979423 20981892 + gene protein_coding_gene FALSE TRUE AT3G56600.1 inositol or phosphatidylinositol kinase similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G40850.1); similar to Os04g0668700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054197.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96840.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) -0.156041310198977 -1.39944437908228 0.189536528019241 1 0.296104152545072 3.29158200551216 -0.156041310198977 0.126328969114831
AT3G26130_at -0.516132206552666 0.124780391828443 -0.104093644995854 0.772140754493053 0.232538843246974 -0.234329707478192 -0.0548741632296302 0.116886267312980 -0.432583267298746 -0.28629245423065 0.285695631848154 -0.308948214369997 0.182092417503038 0.0799857756890935 -0.423036379115804 -0.379140522782095 0.210571910265298 0.227025982657699 0.165522999712637 0.202332808010752 0.202362752666393 0.202332808010752 0.206496266867373 0.205428280906818 0.211073165802334 0.205810173043335 0.207065595585495 0.208507027060699 0.202773242671993 0.205506820900684 0.202332808010752 0.208415943777254 0.202751300730842 0.202332808010752 0.203565545648582 0.209654684647280 0.213621092847024 0.203364850324381 3 3 - 9554962 9555522 9555235.182 9554945 9556848 - gene protein_coding_gene FALSE TRUE AT3G26130.1 glycosyl hydrolase family 5 protein / cellulase family protein similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT1G13130.1); similar to H0510A06.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67677.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) 0.208815360730445 1.39941828454891 0.189544140826937 1 0.296073211835201 -0.0579704742020264 0.208815360730445 0.206655353335097
AT2G11000_at 6.03855611889261 6.43177864022538 6.40270522102584 5.46810515822295 6.68750317552463 5.92770677432593 6.85707651676125 6.53549628099566 5.51104942353731 6.11530014182446 5.92073846149828 6.10660541977601 5.83197461732262 5.91361259533126 5.22303109015857 5.74617917341312 5.90940943654418 5.52516403501817 5.99445796604261 0.266942198862870 0.265512580457683 0.264952807962334 0.278738430257898 0.276980610800679 0.278061262759929 0.263246332505515 0.281510271838078 0.293841204016232 0.26449702699772 0.265023532517545 0.263246332505515 0.263246332505515 0.271711053247004 0.281209968329923 0.269037123935682 0.287197652093685 0.277986552955275 0.269333589880952 2 2|0 -|/ 4348423 4349658 4348897 4348205 4354938 - gene protein_coding_gene FALSE TRUE AT2G11000.1 ATMAK10 (Arabidopsis thaliana MAK10 homologue); acetyltransferase Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type. similar to natC N(alpha)-terminal acetyltransferase, Mak10 subunit-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36037.1); contains InterPro domain Mak10 subunit, NatC N(alpha)-terminal acetyltransferase; (InterPro:IPR007244) -0.222867481889618 -1.39898588592969 0.189670326063692 1 0.295560566017374 12.1164619177972 -0.222867481889618 0.226219294370207
AT2G15880_at 2.81067714907655 2.66057840311127 2.46841646225988 2.56074070071878 2.18409865041532 2.67274504754697 2.05553785179847 2.14337743932494 3.38855106862665 3.06341697446826 3.57594432799688 2.59174582874338 2.38646894736648 2.74558436740444 2.95819214564623 2.77259596772291 3.06493265917418 3.53606290085594 3.39492960379378 0.227353299687876 0.229821364025318 0.227764070214653 0.233244411445755 0.224385218807223 0.236907665278187 0.226106893508081 0.237578188632649 0.239538146839051 0.228313458052023 0.237930944396604 0.227720250756697 0.228113272858930 0.227625743531476 0.229147656825781 0.223325649959405 0.227798355363016 0.230331286266855 0.228877263444862 2 2 - 6925122 6925277 6925209.091 6925121 6927401 - gene protein_coding_gene FALSE TRUE AT2G15880.1 leucine-rich repeat family protein / extensin family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT1G49490.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); similar to extensin-like protein [Zea mays] (GB:AAD55980.2); similar to extensin-like protein [Lycopersicon esculentum] (GB:AAD55979.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.137200409054164 -1.39872193251506 0.189747389310981 1 0.295247678628746 5.56264151740321 -0.137200409054164 0.0911695088890357
AT3G01280_at 10.2033137714896 10.3214972369027 10.5214838621282 10.5501589188046 10.2294714298042 10.0356916962211 10.4742303687301 10.4920404652078 9.57786320079428 9.84607470999147 9.8867877418721 10.0623196626249 9.85499345702916 9.76962192465992 10.1414230266758 9.86276808870489 10.0622215738958 9.93431426526908 9.5914863535629 0.108744046413296 0.113131966412837 0.112983503071222 0.119691849123984 0.112181987099252 0.11360114257792 0.111030341172797 0.114100506172481 0.118557230785990 0.112343977780455 0.113782818220278 0.111248348820373 0.116927980136581 0.118456175472566 0.111320895313620 0.113497904064215 0.118405492154810 0.111689056420196 0.113332876050708 3 3 + 86839 87586 87282.909 85608 87865 + gene protein_coding_gene FALSE TRUE AT3G01280.1 porin, putative Identical to Outer mitochondrial membrane protein porin 1 (Voltage-dependent anion- selective channel protein 1) (VDAC 1) [Arabidopsis Thaliana] (GB:Q9SRH5); similar to porin, putative / voltage-dependent anion-selective channel protein, putative [Arabidopsis thaliana] (TAIR:AT5G15090.1); similar to outer mitochondrial membrane protein porin 1 [Brassica napus] (GB:AAW22621.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) 0.118214572816116 1.39844499643195 0.189828271260417 1 0.294919444223870 20.1627931215149 0.118214572816116 0.0397111908670408
AT3G04020_at 2.93560296054941 3.34349502422576 3.37271649486172 3.22388702414197 3.81092088728036 3.19392505660534 2.97784428407037 3.38259610716051 3.15976096216614 3.26789151635305 3.52917779828408 2.75667927293365 3.28462701520965 3.25500342652449 3.26492591511672 3.08168120623296 2.89007718285453 3.31722655648101 2.79667559877097 0.167267519562800 0.164303106007520 0.172355047112029 0.171318145592476 0.173755144002412 0.174289022898407 0.168813479969609 0.164014817955977 0.171340482675620 0.175121307720789 0.165851239810676 0.172441898232315 0.165264687244358 0.181661417761609 0.170413837618845 0.172119599396440 0.166917066798724 0.171186401143046 0.169572387770788 3 3|0 +|/ 1041460 1042355 1041805.667 1041078 1042525 + gene protein_coding_gene FALSE TRUE AT3G04020.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78669.1) 0.169063271331041 1.39744826687674 0.190119616123067 1 0.293738445509381 6.40372389109594 0.169063271331041 0.148164916068661
AT2G31290_at 2.68941456447987 2.92323905158162 2.92706240009043 3.05714022006229 3.48290174389929 3.32177999736986 3.53790637594213 3.37528170283622 2.68439191661228 2.92460797297335 2.91948029048125 3.14504445735228 2.78955157880349 3.14132295271846 2.63118900756394 3.27481572322201 3.02401909695502 2.97674359084378 2.8049420902002 0.210011780361525 0.215631447303309 0.212899371162806 0.223026204521869 0.209005768133438 0.224651663749445 0.209005768133438 0.221170997789793 0.218058851435437 0.209005768133438 0.211080362158254 0.221199663202137 0.217946830370051 0.218962573893244 0.211617752568775 0.212684372698925 0.209005768133438 0.220281588482742 0.209182839299000 2 2 + 13351877 13352446 13352150 13350891 13353147 + gene protein_coding_gene FALSE TRUE AT2G31290.1|AT2G31290.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63090.1); similar to hypothetical protein 31.t00019 [Brassica oleracea] (GB:ABD65113.1); contains InterPro domain Protein of unknown function DUF860, plant; (InterPro:IPR008578) 0.124442088646376 1.39732291122746 0.190156284287776 1 0.293589954821849 6.06054983895162 0.124442088646376 0.0609391134942819
AT4G04220_at 4.95673783874843 5.90400824952724 4.4482360961936 4.71424590040582 3.59156282387586 3.36352262407548 1.81439278636412 1.96720366406883 4.0400101391772 2.51062436323014 2.23090167492208 3.3074486327439 1.922522738484 2.59933091765745 2.55519537326327 2.68816870320386 1.64453834868629 2.43902191988811 2.95240196437097 0.251645622209343 0.232615203492401 0.235263297403943 0.245223829967200 0.240706917116097 0.239911493080500 0.236849718534547 0.231675211224314 0.244957128152869 0.231675211224314 0.239827017529813 0.231675211224314 0.241076298935123 0.235017307894684 0.241556420256349 0.235235218939766 0.238754021358867 0.237438978598649 0.231675211224314 4 4 + 2035418 2035894 2035651.818 2033425 2035944 + gene protein_coding_gene FALSE TRUE AT4G04220.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to Hcr2-5D [Lycopersicon esculentum] (GB:AAC78596.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.187740778596391 -1.39726569307039 0.190173023322660 1 0.293522179722577 6.6405236783402 -0.187740778596391 0.176773110800901
AT4G38920_at 11.2171767263192 11.2782905184767 11.5207501727993 11.5024403774793 11.3951886424059 11.4747859025170 11.4823205089593 11.7388697493720 11.2726733014195 11.2533432940691 11.4105095518349 11.2773932793784 11.4443237511248 11.4114432493675 11.4965066215971 11.1984391946761 11.3173696587188 11.4755253736616 11.0217946620177 0.0584686270745575 0.055241747711527 0.057381656955168 0.0567505882936258 0.0566662229138784 0.0578892320457685 0.0585780400466798 0.0559133977405307 0.0558450287746538 0.0562466810147708 0.0561297419038621 0.0558771418813375 0.0552670136193006 0.0593087179030543 0.0572405427639281 0.0555432652714865 0.0602829557504472 0.0569029601412177 0.0568035337642347 4 4|0 +|/ 18147333 18148787 18148310 18147205 18149261 + gene protein_coding_gene FALSE TRUE AT4G38920.1 ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3); ATPase Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AVAP4) [Arabidopsis Thaliana] (GB:P59229;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q944R9;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 2) (AVAP2) [Arabidopsis Thaliana] (GB:P59228;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (GB:Q43434); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, V0 complex, proteolipid subunit C, eukaryotic; (InterPro:IPR011555) 0.120230990280720 1.39716157046752 0.190203487319731 1 0.293398850921065 22.7319991185646 0.120230990280720 0.047777939002782
AT3G53550_at 0.668929876502765 0.500427809547973 0.667966753761675 0.68183860100246 0.51365799339089 0.465070590843279 0.61492574261262 0.776475698100251 0.391968126807968 1.04917684320897 0.646892947113583 0.556961078719322 0.295968256498359 0.822310812761034 0.452289615934577 0.922147910787681 1.04110395261242 0.439067274923466 1.03680333174156 0.224048042098725 0.231773369862482 0.226097463021947 0.229576690240215 0.234278283786780 0.226622783788871 0.229473777491281 0.222917118579541 0.22882084433998 0.232037914873960 0.229469046479289 0.228311987857526 0.227822239158043 0.229829875314670 0.223232094258846 0.223854279954306 0.233003058498589 0.234756384977915 0.2277344354675 3 3|0 +|/ 19868502 19869204 19868849.5 19867848 19869286 + gene protein_coding_gene FALSE TRUE AT3G53550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44850.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92031.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain FBD; (InterPro:IPR013596) -0.118473166512676 -1.39679159132868 0.190311768322902 1 0.292960676169793 1.34769938243106 -0.118473166512676 0.0413323588477295
AT3G02000_at 2.50400512150206 2.75922446298888 2.53349546898886 2.70311480324747 2.57155135512432 2.66410444582029 2.70745548651936 2.80714776437433 3.02600910258354 3.02128075426725 2.54687148947494 2.52938596180213 3.34195408433038 2.69110559211958 2.45617675527428 2.58246992525103 3.17435151407387 2.8462393893689 2.77704809870699 0.239329921403484 0.251261083712185 0.242687074305082 0.242465708766990 0.240151016171698 0.242121887226089 0.238094588626401 0.242229902140469 0.250833117253859 0.239134898696981 0.241929882630925 0.239042146494968 0.242768942255154 0.242609401829307 0.243291924024724 0.238094588626401 0.239295848549073 0.244120454897612 0.244489657786999 3 3 - 332559 332867 332721.909 332282 333029 - gene protein_coding_gene FALSE TRUE AT3G02000.1 ROXY1; thiol-disulfide exchange intermediate Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on Cysteine 49. Identical to Glutaredoxin-C7 (AtGrxC7) (Protein ROXY1) (GRXC7) [Arabidopsis Thaliana] (GB:Q96305;GB:Q9S7X8); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G14070.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); similar to Os04g0393500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052649.1); similar to OSJNBa0072K14.2 [Oryza sativa (japonica cultivar-group)] (GB:CAD40555.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.123384168387482 -1.39672336066803 0.190331742903744 1 0.29287987753343 5.5125200256446 -0.123384168387482 0.0580216585901695
AT4G10050_at 5.95416629824716 6.18223037380507 6.2581922813887 6.3461834897195 6.53420452882634 6.1114499261941 6.47296874463592 5.91021609625774 5.46472040213179 5.43761533616582 5.70667637129813 5.14924000494984 5.41657815949219 5.46666496287141 5.23271777703516 5.49674782633347 5.61075331360768 6.0229603145749 5.24037814084886 0.168886548356928 0.181521845563786 0.171162501505135 0.171603710985637 0.177566937914983 0.16683920277886 0.172783968623382 0.16989671740422 0.167343267661919 0.170096712796871 0.174754838051509 0.171449039123222 0.169919911395726 0.169222149937752 0.177227025423290 0.169753191421697 0.174523754535090 0.172059349066698 0.175560122753528 4 0|4 /|- 6284892 6285962 6285578.143 6284447 6287290 - gene protein_coding_gene FALSE TRUE AT4G10050.1 hydrolase, alpha/beta fold family protein similar to P0041A24.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01494.1); similar to Os04g0443500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052889.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.157249946591941 1.39657756317774 0.190374431143757 1 0.292707233251738 11.6680499512106 0.157249946591941 0.128942294051494
AT3G62630_at 6.6516991426198 7.0243217707402 6.30925604523763 6.10499225656577 7.59120260236103 7.67169971482243 6.28242209521632 6.56129006862404 7.06703299036533 6.31397450296675 7.84205645483319 7.13019885563298 7.17772240372448 7.0239617104348 6.79460886466058 6.51116004543795 5.36709396851675 6.36003674191084 6.99882789436292 0.230364180781068 0.222070542584934 0.234577482706456 0.233907061554588 0.237594706147764 0.231570688964281 0.223280066802103 0.230137578356045 0.238819949086334 0.230311459097655 0.228259924802641 0.236276098622667 0.228029159101037 0.240988486517548 0.234622090608641 0.227798660702817 0.24839794974978 0.227360896234370 0.223544234178763 3 3 - 23174918 23175408 23175145 23174723 23176171 - gene protein_coding_gene FALSE TRUE AT3G62630.1 similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT2G15760.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84267.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 0.135965401762783 1.39633481566125 0.190445523367636 1 0.292419813608928 13.5591771336279 0.135965401762783 0.0890548194883659
AT3G62410_at 12.1756483741147 12.0886048415813 12.3514717389738 12.4289544854740 11.9762254332735 11.9877020967943 12.3699240764529 12.6470453188214 12.3668657234015 12.4275845722502 12.1810902188559 11.8595169281653 12.4793335749206 12.4681248850937 11.8310517499212 12.5842012209590 12.5099387491437 12.2720790008175 12.3506730390963 0.0721448203643338 0.0720424046182748 0.0720516872326618 0.0713184982241991 0.0719413789168075 0.0751009120907672 0.0714572488104215 0.0713184982241991 0.0751099534033014 0.0750291094454058 0.0723382360599896 0.0729768270643128 0.0715727246384995 0.0739817029894337 0.0737254795462318 0.071569046443356 0.076586201313113 0.0713255909951242 0.0753225239133466 3 3 + 23101984 23102345 23102149.727 23101920 23102542 + gene protein_coding_gene FALSE TRUE AT3G62410.1 CP12-2 CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494. similar to CP12-1 (CP12 domain-containing protein 1) [Arabidopsis thaliana] (TAIR:AT2G47400.1); similar to CP12 [Pisum sativum] (GB:CAA96570.1); contains InterPro domain Protein of unknown function CP12; (InterPro:IPR003823) -0.121378975689164 -1.39575922726741 0.190614182200044 1 0.291738435238552 24.5806344553027 -0.121378975689164 0.0520627267750351
AT2G21090_at 3.02014309788181 2.40834395924343 2.56190137047776 2.52733962030364 2.35771396580326 2.49317879568842 2.71640049349980 2.66470529199714 2.7047623091897 2.50219574343180 2.34643852559615 2.73061829284493 2.29332364718695 2.52249696773157 2.88207686594194 2.27367991202794 2.66167099853609 2.64156077995572 2.64827041562701 0.177449770574538 0.188126477539976 0.180458224020041 0.182214256090979 0.182999609269227 0.174203618538855 0.186216844157149 0.174203618538855 0.180497060639518 0.179307193127215 0.181846260178342 0.175463880438231 0.175609755649270 0.183634671674526 0.183272036170879 0.174203618538855 0.181242998306939 0.176455670944468 0.174203618538855 2 2 - 9052847 9053316 9053125.818 9052597 9054660 - gene protein_coding_gene FALSE TRUE AT2G21090.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to Os03g0775400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051430.1); similar to pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83258.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.145895506637895 -1.39541791186026 0.190714253679318 1 0.291334476931414 5.17491219343382 -0.145895506637895 0.108971659494087
AT1G13160_at 3.52820174917937 3.98724425905017 3.68354013695103 3.55867860210532 3.37946290479259 3.52463652838266 3.90011219783158 3.43748328593948 3.11161896766465 3.21141920565048 3.29713288058046 3.41581701048124 3.23095284995885 3.33036334209693 3.25721913276537 3.23386663788534 2.79816820108251 3.00796246131699 3.63971176505619 0.218583158626343 0.222025373332266 0.213142388626899 0.213251662051722 0.218346376789828 0.224171524068971 0.218264268215624 0.217274749824054 0.224072925159084 0.221506149075484 0.216435896451772 0.215416644234981 0.213840956997051 0.216838200484972 0.222122477161952 0.213142388626899 0.226402412297196 0.220878009075575 0.225656781277561 1 1 + 4487643 4488337 4488018.455 4484584 4488574 + gene protein_coding_gene FALSE TRUE AT1G13160.1 SDA1 family protein similar to SDA1 family protein [Arabidopsis thaliana] (TAIR:AT4G31520.1); similar to H0323C08.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86217.1); similar to OSJNBa0089N06.18 [Oryza sativa (japonica cultivar-group)] (GB:CAE04257.3); contains InterPro domain Region of unknown function, nucleolar NUC130/133, N-terminal; (InterPro:IPR012977); contains InterPro domain SDA1; (InterPro:IPR007949) -0.150581080772529 -1.3953565820462 0.190732239865060 1 0.291261898049982 6.88359593835139 -0.150581080772529 0.117551298402618
AT3G61060_at 10.4996993293603 10.4686504377408 11.4475839314875 11.4144518371136 12.1640536814957 11.7184268655004 11.1300611790591 10.9524761022771 10.4054605039410 10.8431544132371 9.83413174737696 9.07234627845342 10.5947550991632 10.5708696356629 7.49696812410062 10.5679728743833 11.1231442232816 10.4880201337571 10.6276312029510 0.0802827620276031 0.0803304660105968 0.0850979050525699 0.0822066168649435 0.0874126650981644 0.0805991931178452 0.0953645370419712 0.0809282259461839 0.0896081111791984 0.0798680577998914 0.0806547115199982 0.0860628879570096 0.0814208947622906 0.084693279945312 0.119254536882634 0.0802674369744535 0.0881012768434007 0.0839422550045873 0.081984823737508 3 3 + 22614428 22615243 22614909.364 22613885 22615553 + gene protein_coding_gene FALSE TRUE AT3G61060.1|AT3G61060.2 ATPP2-A13 similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE86301.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)|similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE86301.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.133258978967984 1.39523209542650 0.190768752421873 1 0.291114584770673 21.5213961144537 0.133258978967984 0.0833867606608741
AT3G06910_at 3.03171776768884 3.27749127317601 2.43180886589774 2.81679995967667 3.10859283960137 3.49688327866509 2.65674716432188 3.15339466621012 2.95079487420844 2.86546541898122 2.95252239827333 3.25372763895696 2.72379715009518 2.80576155727958 2.48046827811260 2.94107637326245 2.29663496303506 2.41884899563814 3.15024509084324 0.219302136933897 0.216124287721663 0.229912462188274 0.217697174204909 0.216124287721663 0.222076526404455 0.216124287721663 0.221458988585981 0.223794638250832 0.216124287721663 0.216124287721663 0.216124287721663 0.216124287721663 0.225738245537009 0.224016376254400 0.222816125382991 0.237803688246029 0.220552487691771 0.216124287721663 3 3|0 -|/ 2178947 2179831 2179428.6 2178636 2181203 - gene protein_coding_gene FALSE TRUE AT3G06910.1 Ulp1 protease family protein similar to ESD4 (EARLY IN SHORT DAYS 4), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G15880.1); similar to putative SUMO protease [Oryza sativa (japonica cultivar-group)] (GB:BAB19414.1); similar to Os03g0410100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050342.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.160523470284150 -1.39516098494883 0.190789612121691 1 0.29103043897996 5.85814937557603 -0.160523470284150 0.134721801428944
AT3G19040_at 1.83084467283321 1.51627172688282 1.53196200110564 1.54487579144635 1.09370740217498 1.24530376722408 1.34303503469734 1.67499312282103 1.79726018063851 1.63656999853815 1.54667913227973 1.31064677887544 1.54644319338179 1.57045425979330 1.83392486879434 1.84680917571693 1.63068426951321 1.80944002398667 1.56430309477226 0.206064049415291 0.203512449363515 0.210106725921332 0.203718895816997 0.209531098788204 0.19972787441505 0.198482217660632 0.200692801634526 0.197470953620942 0.197744306526643 0.207002001100587 0.202083764716559 0.199303020826820 0.205664873338757 0.198559967154986 0.197962608444697 0.22082155390621 0.207206410175869 0.203193196251791 3 3 - 6567232 6567974 6567551.636 6567163 6575288 - gene protein_coding_gene FALSE TRUE AT3G19040.1 HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY); DNA binding Encodes a protein similar to TATA-binding protein-associated factor TAF1 (a.k.a. TAFII250) with histone acetyltransferase activity. It is required in integrating light signals to regulate gene expression and growth. Identical to Transcription initiation factor TFIID subunit 1-B (TAFII250-B) (AtTAF1b) (HAF2) [Arabidopsis Thaliana] (GB:Q6PUA2;GB:Q9LJ62); similar to HAF01 (Histone acetyltransferase TAFII250 family), DNA binding [Arabidopsis thaliana] (TAIR:AT1G32750.1); similar to putative HAC13 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37451.1); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.133241555338897 -1.39494946531341 0.190851671076032 1 0.290780162537313 3.12408900861934 -0.133241555338897 0.0834081353824725
AT4G14150_at 2.17782827867089 2.27424652744296 2.8411557470839 2.27698344750948 2.38369998386401 2.75247562777251 2.45718979815889 2.33519584624436 2.37986474474683 2.48923964897776 2.49427468791737 2.64398206227016 2.62618914368839 2.45892400547203 2.64041946273548 2.52857178747472 2.60146796090905 2.59102949089508 2.69732075438741 0.161071331521481 0.155901556233039 0.158793735403078 0.156419017750593 0.157260033876023 0.157652319616329 0.156985477971676 0.154333408794670 0.160845282779659 0.162315602674958 0.156109494042191 0.163015547184074 0.154616122439051 0.161256766077986 0.155322527683701 0.160040062776238 0.157722982599693 0.160079482003147 0.156159688377758 4 4 - 8158655 8159222 8158914.091 8158567 8165003 - gene protein_coding_gene FALSE TRUE AT4G14150.1 PAKRP1 (PHRAGMOPLAST-ASSOCIATED KINESIN-RELATED PROTEIN 1); microtubule motor phragmoplast-associated kinesin-related protein 1 (PAKRP1) similar to PAKRP1L, microtubule motor [Arabidopsis thaliana] (TAIR:AT3G23670.1); similar to putative phragmoplast-associated kinesin-related protein 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD21882.1); similar to Os03g0587200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050576.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Kinesin-related; (InterPro:IPR010544) 0.151714599030575 1.39466344015244 0.190935616610755 1 0.290441769397605 4.98497142769718 0.151714599030575 0.119703908956696
AT2G44810_at 1.89042918532551 1.37482413726771 1.49973673421511 1.20537240306924 1.15681615217928 1.58913824843837 0.858307800241546 0.759964136902999 1.20646403637079 0.892845959019919 1.26279418209180 1.22855604899628 1.15356266355562 1.05317739916932 1.41483109198678 1.77348362574422 1.59241809853567 1.12960368943917 1.36480748801974 0.215090141682901 0.212415750018263 0.215531507534901 0.216494179926999 0.208176754038444 0.211659501912869 0.216259593738040 0.219301958884421 0.21137640496704 0.216560888924914 0.210478420699063 0.208793729644142 0.228875503007476 0.218382773290068 0.217450914291285 0.209117422052801 0.213230374743550 0.228500650777152 0.207120118088782 2 2 + 18486717 18487193 18486928.727 18486128 18487268 + gene protein_coding_gene FALSE TRUE AT2G44810.1 DAD1 (DEFECTIVE ANTHER DEHISCENCE 1); triacylglycerol lipase Mutant has defects in anther dehiscence, pollen maturation, and flower opening. The DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of jasmonic acid biosynthesis. similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G16820.1); similar to DAD1 [Brassica rapa] (GB:BAC23081.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.156616045838717 1.39464324699069 0.190941544274922 1 0.29041788085581 2.53220318857664 0.156616045838717 0.128232547898451
AT2G19230_at 1.12328594391149 1.42911051725102 1.81050137699290 1.57516253504462 1.50541867699653 1.71979328287412 1.72059774704308 1.65558717416997 2.01634400160608 1.40241556457221 1.94835964309328 1.63412054562056 1.5903411903325 1.53259262531915 1.66114609750609 1.38533112150351 2.34908325522571 1.67420949053278 1.47564948539494 0.195128920598835 0.199071763812339 0.193058263670788 0.203292429964644 0.196227905783761 0.194038767836767 0.206782589926165 0.199117096593074 0.194392211909454 0.203424136525596 0.193058263670788 0.199846191732609 0.198290661190011 0.196146958202305 0.198884880149798 0.193058263670788 0.214659822925893 0.202007976959167 0.210496279560120 2 2|0 -|/ 8351865 8352428 8352125.1 8351841 8355513 - gene protein_coding_gene FALSE TRUE AT2G19230.1 leucine-rich repeat protein kinase, putative similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to light repressible receptor protein kinase [Arabidopsis thaliana] (TAIR:AT4G29990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19210.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.130500967333555 1.39447939016312 0.190989649853225 1 0.290224046558303 3.24411599678519 0.130500967333555 0.0772172714820478
AT3G16220_at 9.84210254843818 9.71868813782765 10.1258839628005 9.89889135086978 10.3212332487347 10.0350642773627 9.84867820678089 9.58905577760636 9.56744559002778 9.5612009952838 9.7971251122635 9.49359696218136 9.65190654411568 9.47775005118589 9.24581324198877 9.87356554943789 9.51719583539743 9.32483512977148 9.76020969875262 0.0849565132126093 0.0849588808258175 0.0869905457638264 0.0872484243204438 0.0916262275204208 0.0868807273731724 0.090525160539421 0.092335047416964 0.0923592437211163 0.0903696005211196 0.0849565132126093 0.0849565132126093 0.090226357439996 0.0953725603058292 0.0872853448288319 0.0849565132126093 0.0933633197952804 0.0906984931752106 0.0887371332414611 3 3|0 +|/ 5498177 5499049 5498700.556 5497603 5499241 + gene protein_coding_gene FALSE TRUE AT3G16220.1 similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G16230.1); similar to Os01g0231800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042498.1); similar to At3g16220-related [Medicago truncatula] (GB:ABE80927.1); similar to Os01g0231900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042499.1); contains InterPro domain Predicted eukaryotic LigT; (InterPro:IPR009210) 0.131870917108335 1.39433556983652 0.191031881447226 1 0.290053927020264 19.5111208461263 0.131870917108335 0.0804384527596255
AT1G17370_at 8.53535158790452 8.2518412945769 8.45479388536818 8.47047782789555 8.29315104923313 8.48485317282142 9.0040978719976 8.97796666277296 8.0938830967423 8.51143205180302 9.12149143438406 8.6924775048716 9.24831446611928 9.03153858317608 8.61809319124599 9.06439862105854 9.23897950248032 8.24884907995951 8.5773776805991 0.135488434716154 0.135927232190609 0.138974886290390 0.132414508644172 0.130747186619718 0.141198630406296 0.134758787585657 0.133958150844363 0.159289852288559 0.139955806317345 0.136822506295531 0.137379004245273 0.1341697329456 0.142661573983896 0.134303261992126 0.131312446465113 0.147332927108054 0.147830301863827 0.137660217723754 1 0|1 /|- 5951855 5952355 5952098.667 5951535 5955030 - gene protein_coding_gene FALSE TRUE AT1G17370.1 UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B); mRNA 3'-UTR binding similar to oligouridylate-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G14100.1); similar to UBP1A, mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G54080.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.123645742190178 1.39414471903570 0.191087935247308 1 0.289828195127391 17.2101910395513 0.123645742190178 0.0594604887355339
AT4G10640_at 3.17928579739627 3.14219692258659 3.5680894477478 3.20609954997445 2.83232293964866 3.32458148759669 2.83616300119846 3.20084890880845 4.07379599196364 3.58015910570996 3.5825402231747 3.71537414806054 3.74239213429826 3.47658869592139 4.06088541507125 3.74236074602206 4.05056237560247 4.01521282328829 3.24801528295682 0.217500796549738 0.215312318282985 0.221388257241584 0.228808645552072 0.219785699357631 0.223289312614356 0.213775733513029 0.225113845807141 0.213775733513029 0.223729417773383 0.226426778841634 0.214999583471302 0.213932687001653 0.218956755415202 0.215676623610217 0.220911322484330 0.213775733513029 0.213775733513029 0.232623641992364 4 4|0 +|/ 6573232 6574278 6573987.444 6571895 6574423 + gene protein_coding_gene FALSE TRUE AT4G10640.1 IQD16 (IQ-domain 16); calmodulin binding similar to IQD17 (IQ-domain 17), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G00820.1); similar to putative SF16 protein [Oryza sativa (japonica cultivar-group)] (GB:AAV33309.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.153699571023760 1.39406276070274 0.191112011045944 1 0.289731263941184 6.87731335539801 0.153699571023760 0.123309986242763
AT3G26960_at 7.23592028176907 8.0056841404162 6.22057722062343 6.3661344941305 7.14735912228423 7.1452712941302 7.57963846265749 7.72811148602836 6.94515224514778 8.38008865033365 8.96092690133186 9.12229435695817 7.99833548096182 8.34033073074367 8.59575087011557 8.52134058861623 8.73269317319424 8.3188925975823 8.61789856479473 0.206988663288498 0.191687510607025 0.211351167834754 0.209887867266238 0.191687510607025 0.192007148071656 0.191687510607025 0.200007309748034 0.219528725529826 0.197799613887609 0.204223445260697 0.197576299323690 0.197789016200223 0.203592774075107 0.205545762962499 0.19349672158025 0.201636633026679 0.205236945614750 0.194755132272543 3 3|0 -|/ 9946105 9946651 9946377 9945905 9946816 - gene protein_coding_gene FALSE TRUE AT3G26960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41050.1); similar to Os09g0508200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063620.1); similar to Os12g0472800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066754.1) -0.162364479623216 -1.39403906141903 0.191118973341213 1 0.289703235781576 15.4560205998533 -0.162364479623216 0.137985667185967
AT1G80900_at 4.05831483987136 4.20534505598465 4.22590863640673 4.28265654076012 4.42604257809510 4.39390557155845 4.00611614216254 3.96873342992052 3.86738096228330 3.74088842398816 3.88523924484315 3.75952375547553 3.7685564396656 4.16864555967578 3.33705075708885 4.4153023309053 3.96033961609258 3.75833858340822 4.1610251205296 0.233123938939038 0.230836163593783 0.227881687487349 0.230508927629139 0.233212887763826 0.242610037866502 0.227881687487349 0.234349086244531 0.234435569641835 0.231519909247761 0.22866405607559 0.227881687487349 0.227881687487349 0.230070736703151 0.228836253036466 0.231635794057465 0.231332193370623 0.228543248602109 0.231765424164059 1 1|0 -|/ 30403202 30403852 30403481.1 30403042 30405232 - gene protein_coding_gene FALSE TRUE AT1G80900.1 magnesium transporter CorA-like family protein (MGT1) (MRS2) similar to magnesium transporter CorA-like family protein (MRS2-1) [Arabidopsis thaliana] (TAIR:AT1G16010.1); similar to magnesium transporter CorA-like family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98804.1); similar to Os06g0650800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058223.1); similar to Os04g0501100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053227.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) 0.115513665840512 1.39402986144038 0.191121676137188 1 0.28969235543471 8.09823920175896 0.115513665840512 0.0285768030297981
AT2G33730_at 9.47799950389745 9.54557860170435 9.27426745193433 9.5961535253209 9.1868469388256 9.09200272644891 8.99956104479622 9.03724772113247 8.86768327423902 8.27556506784247 8.2002596086293 8.20773340050143 8.15119677579454 8.27066292994182 8.09687908406179 8.41221389169986 8.50057264722846 8.17960766326923 8.42265552380752 0.154718969102465 0.157046241812001 0.149320119234807 0.151760648409428 0.149972823169219 0.149025458194171 0.150869036452246 0.152224191015313 0.156170660731955 0.153371559058264 0.155680852538557 0.154073440113296 0.156254519519713 0.154727963669017 0.155125868015089 0.150785831155797 0.149025458194171 0.150719966443523 0.158641825754257 2 2 - 14272769 14273328 14272990.091 14272526 14275048 - gene protein_coding_gene FALSE TRUE AT2G33730.1 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.1.-) (RH21) [Arabidopsis Thaliana] (GB:P93008); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to Putative DEAD-box ATP-dependent RNA helicase 44 (GB:Q9FZ92); similar to Hypothetical protein CBG09074 [Caenorhabditis briggsae] (GB:CAE64386.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE87919.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.123678131202857 -1.39398647622989 0.191134422400919 1 0.289641046602442 17.6633865419761 -0.123678131202857 0.0595954858446587
AT1G71490_at 2.09037642492967 2.02949448845083 1.85492651051738 2.04175436203379 2.35632768949046 2.28395322316024 2.66266642903605 2.15586535404734 2.3587681930793 2.95904641476164 2.64389067493687 2.51338311185334 2.0636118696818 2.34337604272078 2.16115347381704 2.44220008233358 1.96433388169834 2.38529757953253 2.15605977815987 0.226069067410262 0.228995431857008 0.238673144233822 0.226369923400878 0.230081333584270 0.240325469801042 0.223861243976799 0.223861243976799 0.2316800261229 0.229614153553983 0.223861243976799 0.223861243976799 0.238278455585855 0.230075490289148 0.230575194397227 0.226214274888219 0.234054146131089 0.228447889525119 0.227435388089839 1 1 - 26937107 26937547 26937326 26936567 26939487 - gene protein_coding_gene FALSE TRUE AT1G71490.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G22830.2); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57760.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.138497925121995 -1.39361143630130 0.191244636216626 1 0.289197556266260 4.58739421099425 -0.138497925121995 0.0948959334983434
AT4G15260_at 4.23284510105919 3.85590860707021 4.27573498132039 3.79529513902617 4.89278115476959 3.94972019509307 3.15230741494041 3.02091561970052 3.44680768433605 3.60540296602912 3.09809166995459 2.93340527986798 3.65107534156833 3.3256854261831 2.87179015226417 3.56100560287315 3.70454286123837 3.07009205002241 3.56637712811277 0.203837104429440 0.215798295990958 0.209552157395413 0.208141750926593 0.210582499480356 0.211898519437108 0.201230369395450 0.198085402286813 0.203564044550910 0.211183692866466 0.202932579309678 0.204387435131275 0.200216185022343 0.198085402286813 0.212521468732418 0.202947531616294 0.201148143999746 0.208344654280862 0.203247104014308 4 4 + 8714573 8715085 8714817.818 8713689 8715339 + gene protein_coding_gene FALSE TRUE AT4G15260.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G15280.1); similar to Anthocyanidin 3-O-glucosyltransferase (Flavonol 3-O-glucosyltransferase 6) (UDP-glucose flavonoid 3-O-glucosyltransferase 6) (GB:Q40288); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.200160235181796 1.39280494486631 0.191481822497621 1 0.288244139564047 7.30518368036702 0.200160235181796 0.195753155645845
AT1G62210_at 1.67834812954433 1.46108151911630 1.61150360097367 1.63563501293389 1.82855540719648 1.95928972373631 1.91956998132919 2.08817059373682 2.34884565405988 2.88419541506643 2.67283246193383 1.96680203236688 2.37028874224221 2.10711593955769 1.91884171768276 1.95808092662835 2.24103043057561 1.87569411925098 1.82744830188292 0.207415397954373 0.207800931911603 0.209208066308087 0.217278085009935 0.205306076648260 0.203962341191409 0.201427138647258 0.205079350998360 0.206913510032447 0.216800126245420 0.206035803521352 0.217628456191428 0.201427138647258 0.203676639637751 0.214209405544106 0.207242003917414 0.205461790149289 0.211021664745235 0.202870409700875 1 1 + 22989781 22990119 22989992.909 22989667 22990526 + gene protein_coding_gene FALSE TRUE AT1G62210.1 unknown protein -0.121353640222429 -1.39263586964215 0.191531578240171 1 0.288044309511906 4.01893537271230 -0.121353640222429 0.0528609720942491
AT4G12130_at 2.26078950460082 1.95979382504425 2.49452806889241 2.05813927565938 1.77949688015241 1.76761243822591 2.32090280397314 2.40432948078219 2.28586768829274 1.94308625724540 1.94846814165881 2.38175646132206 2.08590743734352 1.92572176196700 2.00277018907028 1.61628778161649 2.18652721093200 2.54304492643765 2.21990730918056 0.202242616181430 0.202242616181430 0.208889642510286 0.207639053172487 0.202242616181430 0.204767300877294 0.202242616181430 0.203419770607700 0.208212686356924 0.212186870391525 0.209324087229824 0.206547452442798 0.207495222457811 0.202332779141935 0.206561608757695 0.203721219674389 0.212460912523035 0.203626767928572 0.202242616181430 4 4 + 7264514 7265595 7265110.6 7263593 7265806 + gene protein_coding_gene FALSE TRUE AT4G12130.1 aminomethyltransferase similar to GA20785-PA [Drosophila pseudoobscura] (GB:EAL28126.1); similar to Os06g0134800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056718.1); contains InterPro domain Glycine cleavage T protein (aminomethyl transferase); (InterPro:IPR006222) -0.137409833656832 -1.39244585703082 0.191587508430870 1 0.287819753010986 4.24866448818283 -0.137409833656832 0.0928926144950344
AT3G48730_at 9.50550036354107 9.5526768263059 8.8814988491933 8.86659276469204 9.55126043211167 9.12403419955603 9.61182372015803 9.14911502964627 8.93025353741657 9.38418946570857 9.83799805143738 10.3768277061998 9.56133052730953 9.75147778090812 10.4415367382022 9.93034792349704 9.42611646268846 9.36738941194552 9.27406181035899 0.116854649743175 0.114362338339917 0.117246248804520 0.113608583743082 0.119178498193553 0.118158998233545 0.122194164233560 0.117371699326937 0.137860750043905 0.122123416758213 0.115749413329661 0.113596508177796 0.119652650281392 0.112303699182927 0.121219038891228 0.114975931929820 0.120957810751595 0.129256425280906 0.116151793637765 3 3 + 18061846 18062485 18062228.636 18060608 18062687 + gene protein_coding_gene FALSE TRUE AT3G48730.1 GSA2 (GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 2); glutamate-1-semialdehyde 2,1-aminomutase Identical to Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast precursor (EC 5.4.3.8) (GSA 2) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2) (GSA2) [Arabidopsis Thaliana] (GB:Q42522;GB:Q9SMM6); similar to GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE), glutamate-1-semialdehyde 2,1-aminomutase [Arabidopsis thaliana] (TAIR:AT5G63570.1); similar to Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (GB:Q85WB7); similar to glutamate-1-semialdehyde aminotransferase (GB:AAA79123.1); similar to glutamate 1-semialdehyde aminotransferase [Brassica napus] (GB:AAO63783.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814); contains InterPro domain Glutamate-1-semialdehyde-2,1-aminomutase; (InterPro:IPR004639) 0.145763690293787 1.39236789911758 0.191610459301805 1 0.287727628471693 18.7967109463680 0.145763690293787 0.109321987803054
AT2G03140_at 6.53027511544215 6.68794503675594 6.95482595106434 7.18470037440285 7.33085133160698 6.44982196266058 7.40382292962627 7.10810384338709 6.35836261153458 6.95855306746452 6.10286092494397 6.29223905397636 6.3662635037117 6.3306858511262 6.01440849164985 6.78673427445549 6.04466602230694 5.97555422250124 6.63012579492735 0.206216161204907 0.196392384042436 0.204187435442080 0.205523995059292 0.198517275258370 0.204734839687612 0.199807886527976 0.195123075159085 0.217202072619829 0.198460812544656 0.198216191982577 0.195514239131756 0.200431582303799 0.200202704814978 0.198132595849430 0.203723292805237 0.209489310230938 0.205615925462921 0.205130474850599 2 2 + 948596 949271 948897.455 941997 950031 + gene protein_coding_gene FALSE TRUE AT2G03140.1 CAAX amino terminal protease family protein similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT3G50790.1); similar to Embryogenesis-associated protein EMB8 (GB:Q40863); similar to Os09g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063262.1); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.181162053963677 -1.39233162712090 0.191621138593196 1 0.287684766256342 13.4003885019813 -0.181162053963677 0.167904461048089
AT4G19580_at 1.11525415626935 1.02952579365782 1.38955910780407 1.42522925484770 1.00510524101967 0.952010643181329 0.965497863022764 1.31580232926888 1.81294555189576 1.15308816419352 1.53961381791997 1.00663298191975 1.16800398874685 1.31816459931385 0.971832494886937 1.27103507419163 1.39084933232042 0.97492292975765 1.65784919275649 0.183033423434298 0.185460422106676 0.186145503516948 0.188123907045691 0.185250669915474 0.184443768775053 0.186117450099651 0.193612498853117 0.184181610376881 0.195101686638912 0.19713863717147 0.184437280491068 0.187643789403210 0.201089697162543 0.192741799283125 0.184232416737161 0.182091233326066 0.186831825644476 0.189019656077667 4 4 + 10668726 10669349 10668994.8 10668410 10669462 + gene protein_coding_gene FALSE TRUE AT4G19580.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G19570.1); similar to Aminotransferase, class-II; Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78703.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.124853187203984 -1.39216355330357 0.191670629828725 1 0.287486165089955 2.52296115129931 -0.124853187203984 0.0633847917276287
AT2G24240_at 7.7673610399196 8.53877520397207 7.77387372025366 8.18860232896999 8.82786777584898 8.16276926968196 7.00006940171292 7.10455862535351 5.04261331363164 5.21486547378159 4.64147066847962 5.02998232322236 4.9127345762472 5.60104612100309 3.95117334222183 5.52734976567777 5.27596927250754 4.39571699402923 5.21880675720053 0.253829310691306 0.258929337578857 0.259316127125108 0.254479213543211 0.25732868615379 0.261382211783686 0.264697702482397 0.253829310691306 0.277783056282398 0.258123418496732 0.259548855275036 0.255673885941438 0.254592529055104 0.257660932760168 0.267567810719119 0.256452575168601 0.260718428529667 0.269771551937196 0.260506989136284 2 2 + 10318658 10319169 10318926.727 10317728 10319408 + gene protein_coding_gene FALSE TRUE AT2G24240.1 potassium channel tetramerisation domain-containing protein similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G30940.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE85429.1); contains InterPro domain K+ channel tetramerisation; (InterPro:IPR003131); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain BTB; (InterPro:IPR000210) 0.196877870334057 1.39209784677454 0.191689980777327 1 0.287408528625733 12.9583307862782 0.196877870334057 0.191172826203111
AT3G55820_at 2.34317326481193 2.46723173824644 2.57336371171383 2.58270203950162 3.13529883693151 2.66043407799510 2.06574444118561 2.41196738812811 3.12689414379084 2.95424805292224 3.06492559222101 2.77405687497726 2.52353027155639 2.80736939307421 2.67922501053353 2.60698893998072 2.54320528904234 2.67058242685502 2.43539270053551 0.254518089000404 0.248271723604222 0.252580196975188 0.252620808640631 0.245615636124656 0.264626464687450 0.247345413706467 0.252407128991739 0.251756428494836 0.250281114356425 0.250523301332341 0.249114891159468 0.249903848390287 0.244868533544153 0.247735745815387 0.248671956399658 0.251740660578399 0.245211127763322 0.246006373805246 3 3 + 20725043 20725592 20725246.091 20724688 20725784 + gene protein_coding_gene FALSE TRUE AT3G55820.1 similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO06978.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) 0.142905483736509 1.39205322149052 0.191703124114177 1 0.287355802404545 5.30377965757906 0.142905483736509 0.103954525325125
AT2G34690_at 10.3566510391384 10.1687890914821 10.3334198742862 10.2221679204821 10.7619863590481 10.4657887205684 10.1708517990272 10.1211660438570 9.94959072810668 9.89603805769144 9.89392552459065 9.8632610107473 10.0666099551571 9.9003956874846 9.7684205307038 9.88387472942742 9.97566146356397 9.97966893674797 9.87733449221806 0.097909718035869 0.097114461664481 0.098758121141433 0.0961242756351188 0.097896587144303 0.102015035292177 0.0995045249558085 0.0981639034322644 0.0969455097680339 0.0924892769651067 0.0979705544649353 0.0969217271468666 0.095780666317181 0.0960361133795015 0.0999462922702382 0.0972091780027868 0.0967389164420921 0.0962881254770414 0.0965940924113513 2 2 + 14637595 14638827 14638345.091 14637386 14639140 + gene protein_coding_gene FALSE TRUE AT2G34690.1 ACD11 (ACCELERATED CELL DEATH 11) Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39670.1); similar to Os03g0784900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051478.1); similar to Os03g0710700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051050.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98504.1); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 0.125149514508745 1.39193144503616 0.191738994379597 1 0.287211925352702 20.2371684338903 0.125149514508745 0.0642568591298119
AT4G37210_at 7.0571138868483 7.00404334523772 6.5219155178177 6.82098043274501 6.66121371739039 6.75125420136981 6.91726627775499 7.06294956234082 5.08941786820895 5.76760328698874 5.63195804788191 5.89849095702612 5.97189263437151 5.42980218578606 5.69928064282874 5.69004431245715 5.65318617011802 5.44694352144503 5.95366329141816 0.201216706930992 0.19987008715385 0.201551686924913 0.199680849663046 0.202281329508685 0.198171394917449 0.198527214985213 0.200795412059306 0.21032466811299 0.203770510844313 0.198751228699077 0.197281364007059 0.201417863408866 0.22128217885926 0.198294330256968 0.196380686117051 0.230571170399417 0.205191402443412 0.202097248131452 4 4 + 17513836 17514391 17514085.636 17512253 17514619 + gene protein_coding_gene FALSE TRUE AT4G37210.1|AT4G37210.2 tetratricopeptide repeat (TPR)-containing protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC78589.1); similar to Os07g0122400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058793.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.123681986965350 -1.39112051911279 0.191978003093085 1 0.286254044378769 12.4902227632854 -0.123681986965350 0.0603430505470064
AT3G47480_at 8.782178155623 9.33497814586786 10.1377904549412 9.94946099962619 8.84555250677382 8.22310536304817 6.88834133657199 6.81762001303243 6.68584599406931 5.33356952124899 3.72644612787872 4.12567226400981 4.79633257126499 4.87818985495796 3.50385071379133 4.48718257012774 5.2767139687983 4.29633444943044 4.12949955715056 0.326116676885107 0.316194801370986 0.32675215153395 0.324896851502806 0.338919812761649 0.321055311351652 0.312722183977394 0.302647001636253 0.307934879285952 0.301996768492166 0.314928341882470 0.304385531133402 0.303161143119664 0.306244130819741 0.308203715468532 0.301996768492166 0.301996768492166 0.306518744962883 0.306412461655794 3 3 - 17507512 17507866 17507677.364 17507339 17507932 - gene protein_coding_gene FALSE TRUE AT3G47480.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G39670.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE80363.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080); contains InterPro domain Recoverin; (InterPro:IPR001125) 0.168283271266487 1.39075838640109 0.192084817249125 1 0.285826407660467 13.5070343748633 0.168283271266487 0.148211773992729
AT4G11450_at 1.43670955065698 1.59744296946987 1.49575817960015 1.52275634062103 1.5532631342802 1.62597081947589 1.65329555000676 1.71118924571394 1.55825419877012 2.21126681009405 2.72868512975040 2.84444896333539 2.28758384564527 1.94911989096641 2.35027468258924 2.4556560078779 1.99221158451329 2.11240093691730 2.40417292323764 0.205604931676676 0.206991211565437 0.208378649309798 0.212126360152929 0.201699782287481 0.200898114204798 0.202671031138884 0.198760172987589 0.199294063397318 0.209434576671744 0.20058477029705 0.202675210850714 0.201447285449762 0.212014118310915 0.199364789099865 0.20207278589795 0.198760172987589 0.198936451196425 0.200242255696566 4 4 - 6959103 6959606 6959362.909 6958676 6962041 - gene protein_coding_gene FALSE TRUE AT4G11450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63520.1); similar to Bromo adjacent re (GB:ABE92116.1); contains domain Transcriptional factor tubby, C-terminal domain (SSF54518) 0.115963721182283 1.39064417963204 0.192118513863789 1 0.285691558250915 3.77352102751144 0.115963721182283 0.0324689567797318
AT1G08070_at 1.21191460916420 1.20966894836438 1.25415815216663 1.30756182903295 1.09137676139287 1.10248718901694 0.95945381635704 1.35011988775394 0.886970532395963 0.857424822211415 0.985390722900013 1.19007133532415 1.22377273578410 0.870159546206846 1.37732421138396 0.842818413380213 1.86489293258508 1.26398988819450 1.12176587267878 0.187863029227397 0.181981713400911 0.184759372950606 0.181981713400911 0.182764517714136 0.181981713400911 0.183215436062192 0.187094100286684 0.188252641736464 0.189453443918029 0.184822840048750 0.181981713400911 0.184010013908957 0.185125356013036 0.184478052020067 0.185479579951601 0.192693470251199 0.185955153049071 0.185215130285291 1 1 - 2514406 2514946 2514690.273 2514189 2516602 - gene protein_coding_gene FALSE TRUE AT1G08070.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to Pancreatic ribonuclease; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE87347.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.126511032475131 1.39038903216025 0.192193812845327 1 0.285390320310348 2.26468742364708 0.126511032475131 0.0682635210838993
AT2G29360_at 8.33451817671345 8.54563851611057 8.32725995529964 8.0868740417279 9.21352806810074 8.09074690503785 9.41561295419868 9.22619126178244 9.42681162983565 9.37366659526318 9.79313812187981 9.74079073641967 9.39309468057487 9.72932830434356 9.2019611312549 9.64127984438836 9.17769865615781 9.48994506495954 9.64535098427143 0.213043985826043 0.194005436597423 0.209155129967340 0.201740980327021 0.187103033437703 0.201929409925563 0.206743463351379 0.193164023388577 0.198884286701792 0.196573055864028 0.198607163689628 0.189618098737708 0.194106225856941 0.198535211604181 0.191506180514487 0.190482755959622 0.198891964857267 0.187103033437703 0.190336699248811 2 2|0 +|/ 12611384 12612160 12611696 12610880 12612348 + gene protein_coding_gene FALSE TRUE AT2G29360.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29150.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.205963243476261 -1.38966281138715 0.192408270330653 1 0.284533116841464 18.1564700535151 -0.205963243476261 0.204678775148861
AT1G64220_at 0.981426603178285 0.954683771347182 1.23583339599898 1.02156254310428 1.01535921533879 1.31311366571549 0.985743228906442 1.18298342128246 1.23614070032264 1.11355411175188 1.57659279997931 1.56245867552393 1.47798985873085 1.31760457107024 1.26629856302890 1.28370732415951 1.20163072863942 1.22010014993281 1.33328713853429 0.194885165074526 0.190657453285090 0.195455180056326 0.195580082692473 0.190188119323113 0.197117156569866 0.191036127427900 0.1942195476258 0.199432456033408 0.199507152767718 0.192707859833401 0.194713319108406 0.193571235985308 0.191826181850068 0.190188119323113 0.204271506450368 0.199513785540487 0.198057666647965 0.190188119323113 1 1 - 23836769 23836958 23836856.545 23836751 23836984 - gene protein_coding_gene FALSE TRUE AT1G64220.1 preprotein translocase-related Identical to Mitochondrial import receptor subunit TOM7-2 (Translocase of outer membrane 7 kDa subunit 2) (TOM7-2) [Arabidopsis Thaliana] (GB:Q3ECI7); similar to mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) [Arabidopsis thaliana] (TAIR:AT5G41685.1); similar to unknown [Hyacinthus orientalis] (GB:AAS21011.1); similar to Os01g0626300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043627.1); contains InterPro domain TOM7; (InterPro:IPR012621) 0.127947566270488 1.38911396921425 0.192570480030916 1 0.28388548436902 2.38181747265202 0.127947566270488 0.0722259315467874
AT1G35490_at 0.877353144652684 0.561754397613294 0.841758973927709 0.713824182518612 0.87047201496326 1.26102103975113 0.994621641912107 0.974295564032475 1.81923803936513 1.31493031230408 0.742329586905601 0.991390759715105 0.781005440900169 1.19442839587402 0.903168324620887 0.80584573333407 0.936283049616747 1.60446281599138 0.872922593854158 0.186349548708629 0.184215752994483 0.185152929885742 0.197360214913435 0.186741303918849 0.185589438368972 0.188248741663048 0.187934555919465 0.189065392815740 0.187350904673996 0.181789742267528 0.181789742267528 0.181906453858202 0.187049935956736 0.186197098419147 0.183893718743485 0.195811686174545 0.18774476985263 0.186376975800210 1 1|0 +|/ 13062159 13063114 13062747.5 13061616 13063428 + gene protein_coding_gene FALSE TRUE AT1G35490.1 bZIP family transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G58110.2); similar to Eukaryotic transcription factor, DNA-binding [Medicago truncatula] (GB:ABE89685.1); contains domain no description (G3D.1.20.5.170) -0.135534926366918 -1.3886180792444 0.192717138429586 1 0.283300483521621 2.05216824252684 -0.135534926366918 0.0897404106006095
AT2G20680_at 2.9821185283177 2.63889116584680 2.62693622084307 2.49752572930429 2.83090893139501 2.33504706005925 3.45046511041464 3.13095973102564 3.41389222277975 3.64393872804559 3.6866689069297 4.1861748374866 3.58728861138368 4.00497472652337 3.88561219224433 3.41961937822352 2.99347702715645 3.84824988301887 3.52072807519562 0.198119412642165 0.196173583142479 0.200362463184471 0.20141491849852 0.201644042861137 0.205345049992780 0.191944276518406 0.208913886924136 0.204825188522250 0.201843776448458 0.191944276518406 0.205867566599855 0.195947305996896 0.210357091781843 0.204631950790378 0.198938974610781 0.194302261470146 0.197544312761829 0.209405041249875 2 2 + 8929499 8930080 8929761 8927548 8930254 + gene protein_coding_gene FALSE TRUE AT2G20680.1 glycosyl hydrolase family 5 protein / cellulase family protein similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT4G28320.1); similar to putative (1-4)-beta-mannan endohydrolase [Oryza sativa (japonica cultivar-group)] (GB:BAB56016.1); similar to Os01g0746700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044230.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547) -0.151341147568480 -1.38861689391639 0.192717489100052 1 0.283299085360018 6.4254538283397 -0.151341147568480 0.120209452369642
AT4G00500_at 6.43039768801486 6.14094424503683 6.35816818129703 6.29971253952965 5.55526558232112 5.7192680288742 5.73637420289936 5.76206134124429 5.48527742212927 5.04551338934249 4.97667839924277 4.80321289255772 5.02443274963406 4.93705159986898 4.12227792166874 5.44020241855781 5.01683354344499 5.16681268180203 4.91110972037131 0.237240562229041 0.231765857003602 0.242142079610059 0.231765857003602 0.234762714326205 0.240634996226531 0.242860741162475 0.239485417628175 0.246775860119156 0.233256349677653 0.235424047793695 0.240102092065198 0.241845928464366 0.239603257486728 0.233115058970068 0.234805208299716 0.235354644209320 0.243505521049664 0.244616706393908 4 0|4 /|- 225286 226001 225640.9 225028 227396 - gene protein_coding_gene FALSE TRUE AT4G00500.1|AT4G00500.2 lipase class 3 family protein / calmodulin-binding heat-shock protein-related similar to lipase class 3 family protein / calmodulin-binding heat-shock protein, putative [Arabidopsis thaliana] (TAIR:AT3G49050.1); similar to calmodulin-binding heat shock protein [Gossypium hirsutum] (GB:AAV65493.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921); contains InterPro domain Lipase 3, N-terminal; (InterPro:IPR005592) -0.122851593863611 -1.38840012797044 0.192781626692581 1 0.283043411152171 11.0418929527162 -0.122851593863611 0.0586236535130385
AT4G39170_at 7.23511848133855 7.34960451687697 7.04109253371112 7.1884789361185 7.86411109001513 7.06238415204744 7.40076840251782 7.13466451910328 7.12848219605026 6.96534217912816 7.60646021308307 7.6144939136062 7.38970909936416 7.40744572412156 7.51877683900037 7.16797610448209 6.27412854848129 7.3828270905657 6.80542527742371 0.168872463374472 0.170223440592654 0.176948467643041 0.169771119725947 0.166980455064288 0.178559238462721 0.165630377990749 0.171098154090131 0.177185017159622 0.166902307849275 0.165094987928827 0.170474173407380 0.173580358884626 0.176803834449167 0.164514571488679 0.165909614043219 0.185664637663649 0.176378445120516 0.172611433030801 4 4 + 18242941 18243430 18243146 18240623 18243789 + gene protein_coding_gene FALSE TRUE AT4G39170.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G75370.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT2G21520.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.168894169367284 1.38804824595497 0.192885781109562 1 0.282628425561847 14.4153497001938 0.168894169367284 0.149710505221234
AT2G39290_at 7.13551164512772 7.12032774379823 6.86233649781004 6.56854975141117 7.27284093949778 7.02148195660481 6.95026464223785 7.61750658352384 7.22032282335793 7.3400923552901 7.40343470671835 7.63601942409409 7.34350796232886 7.44970341027122 7.32010219458982 7.15954121725589 6.82282679079867 7.01639513811865 7.3763940849103 0.207512539941864 0.199717579684073 0.203943505694049 0.228847568387703 0.212545080603486 0.207026458683656 0.202310962100948 0.198686911048107 0.206315781399538 0.198686911048107 0.204173432477419 0.202528169560552 0.198686911048107 0.200802231435109 0.220217729904927 0.204768479389386 0.20882686384636 0.207012042279909 0.201457865120436 2 2 + 16414655 16415856 16415354.909 16414317 16416201 + gene protein_coding_gene FALSE TRUE AT2G39290.1 PGPS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE+SYNTHASE+1); CDP-alcohol phosphatidyltransferase Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria. similar to PGPS2 (phosphatidylglycerolphosphate synthase 2), CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT3G55030.1); similar to phosphatidylglycerolphosphate synthase [Vigna unguiculata] (GB:ABA55724.1); contains InterPro domain CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; (InterPro:IPR004570); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) -0.158964383169231 -1.38804142906897 0.192887799322323 1 0.282620386892391 14.3592080250221 -0.158964383169231 0.133480501674557
AT1G03030_at 6.24577268701113 6.79988278635752 6.50713324399236 6.70660843366155 6.93121427613462 5.6962985149699 6.58335485219326 6.84139930545092 5.67974863090796 6.08348683698968 5.7019598330761 5.63109257618176 5.13118685600806 5.73092712625741 5.42614509874621 5.81966456982348 5.34694005230924 5.74610887743603 5.85578467572067 0.250664587834441 0.248362535163354 0.254361639467976 0.249452336667325 0.258245175802789 0.255329461291487 0.256640693086178 0.261543420994657 0.252009167511648 0.247636081881967 0.247836207251372 0.251796281592437 0.247636081881967 0.254215345378928 0.249713835131596 0.247636081881967 0.262901979720933 0.248445358687579 0.252903005366875 1 1|0 +|/ 702354 703487 702755 701478 703864 + gene protein_coding_gene FALSE TRUE AT1G03030.1 phosphoribulokinase/uridine kinase family protein similar to Os12g0601200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067208.1); similar to phosphoribulokinase/uridine kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99792.2); contains domain URIDINE CYTIDINE KINASE I (PTHR10285:SF6); contains domain URIDINE KINASE RELATED (PTHR10285); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain no description (G3D.3.40.1070.10) -0.231771190686626 -1.38741537495578 0.193073224940438 1 0.281882239170114 12.2588379316060 -0.231771190686626 0.240939840839229
AT1G75410_at 9.24208755123588 9.6903053227561 9.91833732384402 9.89959895617536 10.0757975397706 9.5558799601231 9.91625917406376 9.85002480496015 8.90326342851109 9.23230236380834 9.05761732123053 8.92512682701498 9.34920701619594 9.2568746450859 8.6089916983541 9.5282807084038 9.58663102839272 9.16533690820853 9.07743760059112 0.150943877649291 0.147341692396600 0.150124732066623 0.154075157071653 0.150818890661055 0.152610761319868 0.154714978446704 0.146731126945566 0.166227443258997 0.155760714699643 0.143652166468061 0.154194867382260 0.150871805874377 0.143286746223221 0.153057124625522 0.143286746223221 0.147219347403703 0.149889319030913 0.148097075930225 1 1 - 28303763 28304424 28304032.182 28303453 28306264 - gene protein_coding_gene FALSE TRUE AT1G75410.1|AT1G75410.2 BLH3 (BLH3); DNA binding / transcription factor|BLH3 (BLH3) BEL1-like homeodomain 3 (BLH3) similar to BEL10 (BEL1-LIKE HOMEODOMAIN 10), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G19700.1); similar to BEL1-related homeotic protein 30 [Solanum tuberosum] (GB:AAN03627.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.150745684932465 1.38737944706174 0.193083870651218 1 0.281839885275732 18.8964160291566 0.150745684932465 0.119389104224318
AT3G45310_at 8.04233856317635 8.32968692445355 8.35103818788998 8.3947262822719 7.9458350906426 7.92545829328984 7.4960605364651 7.79073398919246 7.3473923106027 7.10460250998734 6.81145905481465 7.15864225290289 7.2277919332782 7.29985997900658 7.02936812617348 7.46892954652837 6.7324837331269 7.45845947047587 6.94666521938562 0.210432661372867 0.218347743659685 0.219370669975961 0.216713020885762 0.210548909515627 0.217877354922368 0.213242035486886 0.211756790966956 0.217131142321870 0.220371058603383 0.212692467225399 0.20927555222657 0.220400001415531 0.21586034887421 0.211377439826757 0.217989415793683 0.23587745401712 0.215481238239152 0.220541964823999 3 3|0 -|/ 16639690 16640476 16640128.6 16639369 16641506 - gene protein_coding_gene FALSE TRUE AT3G45310.1|AT3G45310.2 cysteine proteinase, putative|cysteine-type peptidase Identical to Thiol protease aleurain-like precursor (EC 3.4.22.16) [Arabidopsis Thaliana] (GB:Q8RWQ9;GB:Q9M3E7); similar to AALP (ARABIDOPSIS ALEURAIN-LIKE PROTEASE), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G60360.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60582.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668)|Identical to Thiol protease aleurain-like precursor (EC 3.4.22.16) [Arabidopsis Thaliana] (GB:Q8RWQ9;GB:Q9M3E7); similar to AALP (ARABIDOPSIS ALEURAIN-LIKE PROTEASE), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G60360.2); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60582.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.127523521124097 1.38672820757953 0.193276923265172 1 0.281072294419155 15.1751152044378 0.127523521124097 0.0717134409113082
AT1G06430_at 10.2034638611287 10.2059697778769 10.7771562501362 10.7896201528081 10.348107359081 10.1249134593121 11.0934143499819 11.1730553039286 10.7667067861171 10.9688656668071 10.7109429082322 10.4878934416596 10.7498028839900 10.8323853783186 10.4110637716459 11.0175601710352 10.8096771947332 10.7598390355936 10.6598047899018 0.079970083560529 0.0784894674691886 0.0799708241089125 0.0797809164240905 0.0782345398650781 0.0817475748762096 0.0789207188086389 0.0783180939183352 0.0906395210755461 0.0782911971239822 0.0796758343569533 0.0776145716154207 0.0770392997360069 0.0785145691067504 0.0827353743280841 0.0770392997360069 0.0803689359933116 0.0791094897879 0.0788217093667595 1 0|1 /|- 1960289 1960864 1960702.9 1960057 1963009 - gene protein_coding_gene FALSE TRUE AT1G06430.1 FTSH8 (FtsH protease 8); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding encodes a FtsH protease that is localized to the chloroplast similar to VAR2 (VARIEGATED 2), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G30950.1); similar to ATFTSH6/FTSH6 (FtsH protease 6), ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15250.1); similar to putative zinc dependent protease [Trifolium pratense] (GB:BAE71245.1); similar to chloroplast protease [Capsicum annuum] (GB:CAA09935.1); similar to FtsH-like protein Pftf precursor [Nicotiana tabacum] (GB:AAD17230.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.117545000342819 -1.38661763469304 0.193309717422916 1 0.280941990556290 21.3498899038282 -0.117545000342819 0.0410689844472112
AT3G14460_at 1.30521225862521 1.25058669609293 2.05494745550135 1.88902984606529 1.24566038187240 1.523438533177 0.86718463286956 1.13923099337291 1.69183131687189 1.44423344853167 1.20582588344142 0.9415678492791 1.18480685116868 1.39022961347957 1.27853525876584 1.18317509837693 1.46985171379883 1.62725707369944 1.56263680946715 0.190204489783731 0.187616933638725 0.194669621211851 0.18808387483697 0.195172107265435 0.187852208920413 0.189522942029577 0.194775354329484 0.193727079363036 0.194673455054189 0.190213767665548 0.187616933638725 0.188376805189029 0.191265891828970 0.191023851456527 0.190174903889564 0.197981702933872 0.200605663373991 0.196370250162402 3 3 - 4851999 4852558 4852314.182 4851997 4856271 - gene protein_coding_gene FALSE TRUE AT3G14460.1 disease resistance protein (NBS-LRR class), putative Identical to Putative disease resistance protein At3g14460 [Arabidopsis Thaliana] (GB:Q9LRR5); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G14470.1); similar to NBS type disease resistance protein [Populus trichocarpa] (GB:ABF81420.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.128318859187423 1.38642012924302 0.193368306006073 1 0.280709259044781 2.83510636271781 0.128318859187423 0.0737632241197422
AT4G26200_at 1.41994056007644 1.3028619148581 1.54456939183365 1.33370634278251 1.59559233760437 1.18092161593248 1.71674129697412 1.36086108594764 1.79487889731173 1.69835871469209 0.87562170703881 1.24268884933485 1.53114995786178 1.82966101442728 1.32123829059648 1.45095711990016 1.38153477107145 1.85348736749165 1.55687106857980 0.207404911486085 0.196991864429430 0.199898365259548 0.19708888885228 0.195789173779933 0.198709186315952 0.194969393177102 0.199352034680268 0.200722511882196 0.201639665267731 0.204377902798735 0.194969393177102 0.206913907680837 0.194969393177102 0.195459817259706 0.197899543022508 0.211434632068785 0.197510025642411 0.195443974042520 4 4 + 13276382 13276843 13276588.818 13275316 13277197 + gene protein_coding_gene FALSE TRUE AT4G26200.1 ACS7 (1-Amino-cyclopropane-1-carboxylate synthase 7); 1-aminocyclopropane-1-carboxylate synthase Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA. Identical to 1-aminocyclopropane-1-carboxylate synthase 7 (EC 4.4.1.14) (ACC synthase 7) (S-adenosyl-L-methionine methylthioadenosine-lyase 7) (ACS7) [Arabidopsis Thaliana] (GB:Q9STR4); similar to ETO3 (ETHYLENE OVERPRODUCING 3), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G49700.1); similar to 1-aminocyclopropane-1-carboxylic acid synthase 3b [Malus x domestica] (GB:BAE94691.1); similar to putative ACC synthase 2 [Lactuca sativa] (GB:AAP14020.1); similar to ACC synthase [Brassica oleracea var. italica] (GB:AAL37503.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.141990483952527 -1.38609091163793 0.193465999156282 1 0.280321373574390 2.99148029070609 -0.141990483952527 0.103366402003944
AT2G29100_at 1.25280775602527 1.33737194050679 1.23467297456566 1.36692654214833 0.616487512674348 1.06648080242054 1.23669219005049 0.636643366387466 1.08244724152654 1.00812648213137 1.18787470554998 0.849248479490872 1.09388098753283 0.652167600084829 0.807796972663896 0.880863838834764 0.772202479869318 1.56214803606792 1.65161832280831 0.203666956518776 0.205047150700754 0.199705480059819 0.198837973724129 0.203443815887839 0.204284271086701 0.193938323967652 0.202418721867533 0.203639897589974 0.202455049366992 0.201655013649841 0.203886992780552 0.203905256763633 0.198813287560272 0.197121778842797 0.196672063167082 0.198190226454359 0.197286452689864 0.200868434039956 2 2 - 12508218 12508706 12508417.091 12508169 12511989 - gene protein_coding_gene FALSE TRUE AT2G29100.1 ATGLR2.9 (Arabidopsis thaliana glutamate receptor 2.9) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.9 precursor (Ligand-gated ion channel 2.9) (GLR2.9) [Arabidopsis Thaliana] (GB:O81078); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.8 (Arabidopsis thaliana glutamate receptor 2.8) [Arabidopsis thaliana] (TAIR:AT2G29110.1); similar to ATGLR2.7 (Arabidopsis thaliana glutamate receptor 2.7) [Arabidopsis thaliana] (TAIR:AT2G29120.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.4 precursor (Ligand-gated ion channel 2.4) (GB:O81776); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.158180658300278 -1.38570659619667 0.193580094574711 1 0.279868650235927 2.2050955037643 -0.158180658300278 0.132609414129550
AT3G10420_at 10.1890731099642 10.3279871320765 10.6953400791430 10.7853466282065 10.6922317680555 10.3873640958577 11.2025998707797 11.0528979975982 11.0283383327693 11.1090906457828 10.9985656382062 10.7175678701752 10.7467889993344 10.8519651896319 10.2770087054356 11.2014654830976 10.6983112645219 10.8652119885281 10.8371930399363 0.0994454708433445 0.0990286372214888 0.106382527296193 0.0969915703160026 0.0969915703160026 0.104832350197911 0.0969915703160026 0.100816683250088 0.107497074244428 0.100082304886583 0.0977699955533564 0.0975086758626038 0.0969915703160026 0.0990331697586924 0.101559210174878 0.0973701879066403 0.112209235170425 0.104155520574972 0.099967347964076 3 3|0 +|/ 3241388 3242252 3241907.3 3239185 3242542 + gene protein_coding_gene FALSE TRUE AT3G10420.1|AT3G10420.2 sporulation protein-related similar to ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G73170.1); similar to ATPase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79945.1); similar to Os07g0187400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059076.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593) -0.12499945762603 -1.38566340077918 0.193592921939391 1 0.279817771357749 21.5596807428081 -0.12499945762603 0.065384722372781
AT2G29250_at 1.32787183354755 1.34903064321338 1.21664560194744 1.02212210039108 0.747340375835537 1.05793307810600 1.00172689111628 1.21066818299087 1.33008344579258 1.43252840861879 1.21270390016432 1.11339571595293 1.05433559293003 1.00066607643765 1.30979788981601 1.33720606067774 1.39499281586423 1.48057203552776 1.08499999688696 0.182674332293823 0.18420224011797 0.185798029968553 0.180221388205515 0.180533557134425 0.186068276130149 0.195401128577616 0.186706834747044 0.180812727311805 0.181556019909061 0.182899663472967 0.181078374109547 0.195064975341205 0.186029795621223 0.18028706838691 0.183155687135798 0.185231187096986 0.189465734960699 0.183865772430000 2 2 - 12585999 12586506 12586304.455 12585986 12587857 - gene protein_coding_gene FALSE TRUE AT2G29250.1 lectin protein kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G29220.1); similar to putative receptor-type protein kinase LRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAC24925.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.127946310745891 -1.38530991613789 0.1936979199552 1 0.279401450233251 2.37691536073724 -0.127946310745891 0.0730961632499987
AT1G12740_at 0.262987931292350 0.685727062569174 0.43280720605864 0.7281173191344 0.495832495541891 0.628792177463851 0.269266670188609 0.467270098389053 0.729320881831903 0.645355053204003 1.09765515268967 0.455201549177506 0.634409678774094 0.850139940739626 0.770973572668189 0.540462945312387 1.01363486050462 0.921665309624656 0.59598897837503 0.190472672608794 0.186912549377671 0.198003814309358 0.18675313227553 0.196988632134472 0.18675313227553 0.187628121805287 0.188496751800666 0.190647090617576 0.196424336011111 0.18869710249408 0.187141516235006 0.190014638983440 0.187902380325113 0.195307160073689 0.193816963198491 0.191298195024668 0.197923553507918 0.19230096092951 1 1 + 4343547 4344498 4344010.1 4342282 4344855 + gene protein_coding_gene FALSE TRUE AT1G12740.1 CYP87A2 (cytochrome P450, family 87, subfamily A, polypeptide 2); oxygen binding encodes a protein with cytochrome P450 domain similar to CYP708A1 (cytochrome P450, family 708, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G55940.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE90564.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.139351965327965 1.38524394224966 0.193717521926356 1 0.279323756568264 1.21755321040807 0.139351965327965 0.0983218674259486
AT3G55730_at 3.32350636536008 3.48564671119388 3.27371580987209 3.83243165347579 3.66389025667192 3.67419751897405 2.86536532023623 3.40899956621984 4.26372402422550 3.45300128168191 3.90607502100141 3.5025647839833 3.67531065878014 3.81268521749092 4.01292926218636 3.77437635670063 3.71810532170065 3.92722791964613 3.7099154952234 0.197451681652067 0.195034866773804 0.197101849917234 0.195034866773804 0.20411486897868 0.199629505039439 0.204144932087536 0.201601660340438 0.198086015101946 0.199283261581541 0.195813383270975 0.195316478837484 0.195368383463538 0.199044632194043 0.200132372785830 0.195034866773804 0.201551080866289 0.195910511311339 0.200073925447886 3 3 - 20693204 20693661 20693418.091 20692883 20695032 - gene protein_coding_gene FALSE TRUE AT3G55730.1 MYB109 (myb domain protein 109); DNA binding / transcription factor putative transcription factor MYB109 (MYB109) mRNA, similar to MYB25 (myb domain protein 25), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G39880.1); similar to Myb transcription factor [Malus x domestica] (GB:ABK20308.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.161229184819274 1.38523318726344 0.19372071757444 1 0.279311091274462 7.24098894261538 0.161229184819274 0.137803823093126
AT4G00820_at 1.20230380347898 0.644811319819685 0.946070804250064 0.630938261734247 0.880139778498547 0.949138446052499 0.998289818715642 0.572087273443657 0.612039270153087 1.34830612273325 1.31996545961203 1.32059943469323 1.42634490101080 1.36127942453598 1.54301649039403 1.36305836537112 1.43242864927314 1.36540783984978 1.25339334775861 0.178418761131991 0.186707197186623 0.178418761131991 0.180577289115806 0.180659848769574 0.181666417774626 0.182248733570614 0.190563460192824 0.185796584615182 0.179861496174888 0.18303971806213 0.181132595036645 0.185250651051412 0.181769140702169 0.182075112784169 0.185006564531479 0.179293495836461 0.178641635210670 0.184168221925620 4 4 + 350719 351259 350896.545 349116 351550 + gene protein_coding_gene FALSE TRUE AT4G00820.1 IQD17 (IQ-domain 17); calmodulin binding similar to IQD18 (IQ-domain 18) [Arabidopsis thaliana] (TAIR:AT1G01110.1); similar to putative SF16 protein [Oryza sativa (japonica cultivar-group)] (GB:AAV33309.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to Os01g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044716.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.158732546240105 1.38509806312915 0.193760871013102 1 0.279151971959892 2.08435184698625 0.158732546240105 0.133657794012502
AT1G65130_at 2.27262555964748 2.01076755894839 2.71072883924267 2.25577462634497 1.85496000081262 2.17886996444864 2.35529848470062 2.25105731310132 2.59156446831286 2.85752098996682 2.21318214756801 2.00773898730745 2.24275384035528 2.36682227238861 2.19822961612859 1.94442488027137 2.69042628295068 2.29579634851012 2.23524642852121 0.186074649208672 0.194227112958484 0.189449644216818 0.192281036169584 0.189727518483388 0.194244358146621 0.193146110270477 0.192519532919643 0.192003983224865 0.196347380573191 0.194751833934278 0.188762305254403 0.189562669459129 0.19026500535964 0.192173077682157 0.194514707815631 0.191359503346646 0.195822145729225 0.191295264803056 1 0|1 /|- 24200150 24200815 24200468.556 24200135 24204685 - gene protein_coding_gene FALSE TRUE AT1G65130.1 ubiquitin carboxyl-terminal hydrolase-related similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65200.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65110.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65120.2); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) -0.144438018359588 -1.38509467909082 0.193761876702248 1 0.279147987122609 4.63944317300683 -0.144438018359588 0.108257669086612
AT3G28260_at 1.80222889337019 1.34390156403312 1.56381541413485 1.38863132925247 1.18517801031514 1.15020818806457 1.03672320501539 1.35731236337077 1.66839422300933 1.81768011863657 1.25258911392955 1.31121878134404 1.57438953350852 1.15694311790045 1.59682672130348 1.51453307367464 1.77438465610926 1.59897927922999 1.58791112905498 0.176887230918242 0.169612614308593 0.1712350930928 0.174988807941083 0.169612614308593 0.171923487043113 0.171601706113592 0.179110198771654 0.172327444383301 0.169612614308593 0.177926616523237 0.171347055036097 0.188930716125523 0.175848877955241 0.180860434668791 0.173358590827477 0.180479437950175 0.176168225706389 0.172130638644808 3 3|0 +|/ 10535786 10537356 10536292.375 10535777 10537381 + gene protein_coding_gene FALSE TRUE AT3G28260.1 unknown protein -0.140964363307123 -1.38483289167827 0.193839689544789 1 0.278839742141247 2.93540563337387 -0.140964363307123 0.101610310097710
AT2G13620_at 1.34821439903835 1.21339446062215 1.30813413361155 1.33944409408512 1.19790146897330 1.14220554244384 1.18655006992819 1.24583179225512 0.92574336717633 1.09118495628787 0.979962108858293 1.48897954940999 1.57239435356603 1.4553333489232 1.22885321157274 1.09335231012012 1.39162355686957 1.65127162402217 1.36395166354888 0.185094597688339 0.188142157075857 0.182002025978447 0.188539431938482 0.185413713172189 0.183165546991182 0.182002025978447 0.184193859984334 0.184913589786259 0.188343888516713 0.182863294572838 0.184858942413250 0.184534682678302 0.185944726455355 0.182974875452851 0.182002025978447 0.185355767731813 0.188746339762085 0.188031641055946 2 2 + 5687105 5687563 5687361.818 5685088 5687703 + gene protein_coding_gene FALSE TRUE AT2G13620.1 ATCHX15 (cation/hydrogen exchanger 15); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX18 (cation/hydrogen exchanger 18), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G41610.1); similar to ATCHX19 (CATION/H+ EXCHANGER 19), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G17630.1); similar to ATCHX17 (CATION/H+ EXCHANGER 17), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT4G23700.1); similar to cation/hydrogen exchanger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99860.2); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79743.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79742.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.114592445782119 1.38457332684944 0.193916867612356 1 0.278534153006911 2.4900501219141 0.114592445782119 0.0277821939244595
AT1G59680_at 1.03167384200261 0.761670015130662 0.825037308180438 0.971182440381696 1.21148369216364 1.19861911960812 0.89724952675488 0.806578406776233 0.852275949486554 1.25268759644521 1.12468854329241 0.933994689022 1.26371543791027 1.20034009944107 1.13610118737991 1.08440249977796 1.43416248785634 0.86864614229231 1.09042882245450 0.20057788763163 0.204273659836276 0.202491373046331 0.198639769759782 0.204167433069665 0.20341023602984 0.201417660451406 0.204719720560907 0.206929489544305 0.206485755209346 0.207359513274506 0.198639769759782 0.204406307219842 0.204341705560721 0.201708120665694 0.200713170858595 0.209388299391050 0.212006306919878 0.198639769759782 1 1|0 +|/ 21936893 21937849 21937515.222 21936686 21937881 + gene protein_coding_gene FALSE TRUE AT1G59680.1 EDA1 (embryo sac development arrest 1) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14030.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.121456644413411 1.38447300528676 0.193946703763163 1 0.27841605345678 2.06088038154160 0.121456644413411 0.0554442986552175
AT1G62730_at 3.87052169448579 3.64301212196706 3.59075234660518 3.44695919651628 2.76952014851937 2.90722678540673 2.67114845521213 2.41902485429301 2.36463800236991 2.86714686817356 2.21051089926691 2.27747190162977 2.09573944486376 2.03033001317294 2.24087289299215 2.19607355470474 2.29452997265966 2.5934702217786 2.33376300958073 0.218300016582471 0.219266748011534 0.21751797366309 0.223743227751864 0.217114961425641 0.214673859609819 0.220143687462031 0.218660390217119 0.218115996794336 0.216245191048475 0.223060997589163 0.215541998960583 0.218473380657516 0.212629074069418 0.223824407543673 0.220804626259962 0.221833102293744 0.219479137556497 0.215111884574067 1 1 - 23232988 23233437 23233200.182 23232724 23234401 - gene protein_coding_gene FALSE TRUE AT1G62730.1 similar to Os06g0104100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056548.1); similar to PREDICTED: similar to CG15738-PA [Rattus norve (GB:XP_232684.3); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.125893296484388 -1.38418347051595 0.194032834475466 1 0.278075242625799 5.54688277837984 -0.125893296484388 0.0681243270457784
AT3G02100_at 1.91872257836875 1.78226690113113 1.97181241967904 1.73852133805948 1.60721948781474 1.45719892995565 1.94883426297971 1.50296636275318 1.90402664026773 1.96468358886551 2.19321001925189 2.33333609753404 2.06809911797185 2.14098348467283 2.00946787104016 1.88030682196395 2.55426276559278 2.55961214470087 1.67763072738246 0.170673167795781 0.166991190235164 0.173883904266989 0.175614751166217 0.171619406174609 0.167140716652256 0.166814163853304 0.169728992595012 0.172832972310136 0.168035993720121 0.167295716469094 0.168745598620959 0.173862315466925 0.16987169384395 0.175952269962450 0.167836150674390 0.174594712964104 0.173691541479132 0.172742973331424 3 3|0 -|/ 369011 369514 369313.444 368847 370491 - gene protein_coding_gene FALSE TRUE AT3G02100.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-glucosyltransferase HRA25 [Phaseolus vulgaris] (GB:AAG25643.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.137059994535759 1.38404749484074 0.194073295537643 1 0.277915202529082 3.77403783968252 0.137059994535759 0.0938890105186988
AT4G27590_at 2.92794897103834 2.92005115002468 2.62100623903680 3.08280842524496 2.21495297748378 3.00220745619530 2.69258632816428 2.76753015379353 3.23986054140809 3.34643615641154 2.88698714933781 2.51280805788234 2.98669286336127 3.10892439166201 3.28219203224831 2.68623361264042 2.96883625199837 3.09345238771478 2.98896571369821 0.204025154936339 0.197360624683745 0.206619225980557 0.198624748457258 0.211631562560736 0.206921813352219 0.206375571272828 0.196527793682642 0.201695093930418 0.212084305965782 0.200721475992342 0.198749580900803 0.202247224849064 0.213955785967889 0.200368638017937 0.201669342068461 0.201574709596032 0.199992972260098 0.212145981967436 4 4 + 13771231 13771766 13771523.091 13771191 13771891 + gene protein_coding_gene FALSE TRUE AT4G27590.1 copper-binding protein-related similar to copper-binding family protein [Arabidopsis thaliana] (TAIR:AT1G06330.1); similar to Os04g0581800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053656.1); similar to hypothetical protein MtrDRAFT_AC122727g1v1 [Medicago truncatula] (GB:ABE84489.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.173886835040976 -1.38338887877672 0.194269374088907 1 0.277140177586582 5.84489645288685 -0.173886835040976 0.158485368337278
AT1G52570_at 2.68066685997772 3.08050857632423 3.08735471655572 2.53223735785907 2.73772384956252 2.86126119191301 2.60526267205431 2.95030764052211 2.84038282240235 2.90048158581087 2.65573529402628 2.42918207764919 2.29315062858856 2.65785712349291 2.59174448102851 2.87302998253540 2.22974544920781 2.25940817129289 2.63511337259573 0.262986297824430 0.257548216756629 0.261635967084277 0.27359756898914 0.262725407483412 0.26329120382657 0.257548216756629 0.257548216756629 0.271219901322516 0.262516969795942 0.258882893840922 0.260826419755659 0.259068851995700 0.263607391573215 0.25809194001774 0.257548216756629 0.265483287936782 0.261424226169338 0.259201400660969 1 1 - 19587612 19588180 19587863.455 19587609 19590220 - gene protein_coding_gene FALSE TRUE AT1G52570.1 PLDALPHA2 (PHOSPHLIPASE D ALPHA 2); phospholipase D member of C2-PLD subfamily Identical to Phospholipase D alpha 2 (EC 3.1.4.4) (AtPLDalpha2) (PLD alpha 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) (PLDALPHA2) [Arabidopsis Thaliana] (GB:Q9SSQ9); similar to PLDALPHA3 (PHOSPHLIPASE D ALPHA 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT5G25370.1); similar to PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT3G15730.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to Phospholipase D alpha 1 precursor (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (GB:O82549); similar to phospholipase D [Ricinus communis] (GB:AAB37305.1); similar to Phospholipase D alpha 2 precursor (PLD 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) (GB:P55939); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.158901550436151 -1.38319679264606 0.19432659187965 1 0.276914187620036 5.46227748038642 -0.158901550436151 0.134309394165737
AT1G64550_at 7.77469346164147 7.91740219239039 7.78913919244456 7.63938659131033 7.92259164610473 7.54377933264694 8.0866701774617 8.08584494236164 7.03223767557129 7.14974670612894 7.12696380779048 7.4803939430231 6.99254569317986 7.10996370861991 7.58116527740138 7.30048059231338 6.37785808693622 7.28455814848901 7.33132412773214 0.197758974632617 0.198350731558182 0.201834903215199 0.197235212342661 0.20252873527377 0.197921235755533 0.197494605269953 0.198699877360558 0.205143286316381 0.211273459260650 0.199064660181081 0.197302230350336 0.200778321684035 0.20448928981274 0.207211813437163 0.20104103820599 0.208276337404163 0.201301640991586 0.203683469776566 1 1|0 +|/ 23975717 23977008 23976391 23972442 23977277 + gene protein_coding_gene FALSE TRUE AT1G64550.1 ATGCN3 (Arabidopsis thaliana general control non-repressible 3) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to putative non-transporter ABC protein AbcF1 [Oryza sativa (japonica cultivar-group)] (GB:BAD23047.1); similar to ABC transporter-like protein [Glycine max] (GB:AAL66714.1); similar to Os02g0826500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048587.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.128395091047723 -1.38315376865716 0.194339409615779 1 0.276863572661991 15.0088604388935 -0.128395091047723 0.0746929015134371
AT4G31410_at 6.98531111627197 6.96708853737547 7.2876720188909 6.875215219483 6.96974656676577 7.29031347779614 6.1770265318577 6.53348320371001 6.99566115287295 6.84980450391882 6.76787833632671 6.50325099989494 7.00145460427706 7.0601737317664 6.48129197176569 6.96737974234605 6.89196803941678 6.56287344866316 6.94390904547733 0.164975491482752 0.152024343184325 0.157195888343067 0.159512125077776 0.156312762589064 0.157532067627800 0.166374592038232 0.15569533305757 0.174209604047759 0.157494526790672 0.153942470413139 0.155456208288907 0.156127823154813 0.156803923284118 0.158936823192748 0.155166314762177 0.158022984699805 0.158612256464973 0.152425921646519 4 4|0 +|/ 15244673 15245445 15244937.5 15243729 15245844 + gene protein_coding_gene FALSE TRUE AT4G31410.1|AT4G31410.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24740.2); similar to Os02g0150900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045905.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38050.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.144875882657117 1.38304862137113 0.194370738148 1 0.276739878114778 13.7403947973839 0.144875882657117 0.109487293983409
AT1G26630_at 12.5390718551860 12.5583186416554 12.6380809328637 12.6057809181211 12.4709657052696 12.6064971726883 12.3534644073726 12.5129026343495 12.6516139060570 12.3945245511783 12.7029993463186 12.6713870312337 12.6314138746246 12.6600650172394 12.8476253708921 12.4496378634743 12.5491266912349 12.6129985557041 12.4465951489958 0.063042755991687 0.0637745142838556 0.0634887977125987 0.0630238642368013 0.0617271227202852 0.0660896265170306 0.0626148258769212 0.0642896559432084 0.0640285431054967 0.0627964705938279 0.0621217440589983 0.061446713081239 0.0612240168231536 0.066679309864223 0.0622403627804662 0.0618829921907457 0.064180948634686 0.0620833210912101 0.0629693335362564 1 1|0 +|/ 9205972 9207039 9206560.444 9205823 9207370 + gene protein_coding_gene FALSE TRUE AT1G26630.1|AT1G26630.2 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative Identical to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) [Arabidopsis Thaliana] (GB:Q93VP3;GB:Q9LQY9); similar to eukaryotic translation initiation factor 5A, putative / eIF-5A, putative [Arabidopsis thaliana] (TAIR:AT1G69410.1); similar to eukaryotic translation initiation factor-5A [Brassica napus] (GB:AAR91929.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Eukaryotic initiation factor 5A hypusine (eIF-5A); (InterPro:IPR001884); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) 0.116235323845667 1.38299542939807 0.194386588256562 1 0.276677305862648 25.1047525772302 0.116235323845667 0.0367931701930242
AT4G22260_at 8.3104080203291 8.53819278179487 8.6146462438962 8.57578358484882 8.83285075743012 7.8913687393285 8.87679098022279 8.5552361818433 7.72057884375721 7.9333594676941 7.46389711872706 7.26499059695511 7.62382869838128 7.73565662106342 6.98742318306266 8.07011236828959 7.75278777886504 7.11184745019191 7.69034164251749 0.173221880478312 0.174117526685277 0.175091665257958 0.168676360419714 0.168425478772972 0.193175041455973 0.171141770877466 0.173935563295894 0.182638097169269 0.173684548161917 0.183878871530441 0.172468946963365 0.184720358258045 0.18660054020609 0.175016104099188 0.170265643277565 0.180123678801075 0.174854796568424 0.179819780091647 4 4 - 11770011 11771198 11770640.909 11769768 11772526 - gene protein_coding_gene FALSE TRUE AT4G22260.1 IM (IMMUTANS) Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues. Identical to Alternative oxidase 4, chloroplast precursor (EC 1.-.-.-) (Protein IMMUTANS) (Plastid terminal oxidase) (AOX4) [Arabidopsis Thaliana] (GB:Q56X52;GB:O49631;GB:Q9SBA4;GB:Q9ZSQ3); similar to AOX2 (alternative oxidase 2), alternative oxidase [Arabidopsis thaliana] (TAIR:AT5G64210.1); similar to Alternative oxidase [Medicago truncatula] (GB:ABD32645.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) -0.185801667026265 -1.38294085266043 0.194402852121859 1 0.276613106336542 16.1657819753442 -0.185801667026265 0.176751605587274
AT4G38880_at 1.77535202317543 1.72176372522949 1.64344020266592 1.76839112003073 1.76697711586189 1.39991120494296 1.90139649544342 2.07059796328882 2.0415361711618 2.16958580774052 1.57954156083020 1.80688563320423 2.04302037699567 1.92023423596004 1.78936708923681 2.29946459593262 1.79636200238947 1.90203830540145 1.56511960652097 0.209972649260916 0.207770330430579 0.217542566498803 0.228383213130416 0.213553379073805 0.213658749845440 0.207770330430579 0.212501484837092 0.220341721658243 0.209456667398286 0.238844028675217 0.210888275857999 0.208512156192740 0.208778581238031 0.211243983007923 0.207770330430579 0.218642359285745 0.211698873964846 0.210028854057199 4 4 + 18135120 18135637 18135335.182 18134110 18135708 + gene protein_coding_gene FALSE TRUE AT4G38880.1 ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3); amidophosphoribosyltransferase GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2 similar to ATASE2/ATD2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34740.1); similar to ATASE (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT2G16570.1); similar to 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum] (GB:AAR06289.1); similar to Amidophosphoribosyltransferase, chloroplast precursor (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) (GB:P52418); similar to Purine/pyrimidine phosphoribosyl transferase [Medicago truncatula] (GB:ABE79947.1); contains InterPro domain Amidophosphoribosyl transferase; (InterPro:IPR005854); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -0.127948638861431 -1.38227049192418 0.194602712603935 1 0.275824689542509 3.66474277473062 -0.127948638861431 0.073797407198281
AT3G13220_at 1.28317144163333 1.31051241324937 1.20088307295146 1.1151488866595 1.04498446534079 1.32027822930466 1.39345928598507 1.04514309241703 1.45939163761225 1.11597665862915 1.37380043944861 1.42380301057752 1.94017346249986 1.42317604874928 1.73102424724919 1.71134283698261 1.70471473919772 1.53183054369769 1.19725438650217 0.205951271246699 0.204540860797819 0.199260352562093 0.209645285458481 0.20800593876334 0.208869724753705 0.206700005268366 0.200550195385228 0.203900084162248 0.201059334429717 0.199785631625758 0.214787336515912 0.199597741740585 0.197556024458812 0.196667405566625 0.204265261216020 0.203184836142756 0.203057914637771 0.196462407338468 3 3|0 -|/ 4248000 4248620 4248271.4 4247975 4250710 - gene protein_coding_gene FALSE TRUE AT3G13220.1 ABC transporter family protein Identical to Putative white-brown complex homolog protein 27 (WBC27) [Arabidopsis Thaliana] (GB:Q9LK50); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G06530.1); similar to Os06g0607700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058033.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE89315.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.129847188522678 1.38219311097881 0.194625793935585 1 0.275733697812389 2.64545964109173 0.129847188522678 0.0783937066654347
AT2G17265_at 8.44350186360015 8.70637744649365 8.43108669093877 8.4947146053972 8.671044197325 8.53033830925032 8.78980173379685 8.83928260736227 7.44541733903077 8.64550939086566 8.6388383192805 8.5707184314327 8.53150432044868 8.43012082969641 8.28171071318542 8.4972199596688 8.47514510493056 8.36717977853896 8.11871629220637 0.14278161058434 0.147822245264848 0.145276539929267 0.147290029214809 0.144386315999223 0.151556985246774 0.150583345606898 0.14278161058434 0.164527837083789 0.151469417218995 0.145168703415284 0.143715073624497 0.145795420411650 0.156742264671332 0.161110442713206 0.145676891379562 0.149916834210487 0.145638466065255 0.153734138307681 2 2 + 7516240 7516770 7516464.273 7515670 7516837 + gene protein_coding_gene FALSE TRUE AT2G17265.1 HSK (HOMOSERINE KINASE); homoserine kinase Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts. similar to homoserine kinase, putative / HSK, putative [Arabidopsis thaliana] (TAIR:AT4G35295.1); similar to Os02g0831800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048623.1); similar to homoserine kinase [Solanum tuberosum] (GB:CAI65950.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Homoserine kinase; (InterPro:IPR000870); contains InterPro domain GHMP kinase, ATP-binding region; (InterPro:IPR006203); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.120614356347378 1.38205574934969 0.194666772064842 1 0.275572183686325 16.8852362765282 0.120614356347378 0.053450808643114
AT4G20850_at 10.4878934632061 10.4784133165826 10.6266935522777 10.5242254002853 10.5491426956961 10.3018138488929 10.3086975355086 10.4023200037106 10.570485088625 10.8348532497818 10.4597031954152 10.4651919342359 10.2849467108783 10.4420437924281 10.1969247800952 10.6968271557925 10.2517289299727 10.4058924472616 10.7543929911356 0.0977520646571012 0.0960964515739125 0.0991583029682563 0.0945693397433742 0.0918879943028493 0.0996579045854082 0.0952431412509428 0.0959516247767374 0.0982329792588336 0.093758149301715 0.0994677752344375 0.0947738008121756 0.0976512076657076 0.092840693132074 0.097544702042947 0.0949912763696872 0.0999580122553907 0.0938214206063625 0.096380877616704 4 4 - 11160959 11162215 11161490.545 11160732 11169900 - gene protein_coding_gene FALSE TRUE AT4G20850.1 TPP2 (TRIPEPTIDYL PEPTIDASE II); subtilase Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. similar to putative tripeptidyl peptidase II [Oryza sativa (japonica cultivar-group)] (GB:BAD28384.1); similar to MGC83244 protein [Xenopus laevis] (GB:AAH71158.1); similar to tripeptidyl peptidase II [Homo sapiens] (GB:CAH72178.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209) -0.119182640192399 -1.38057033155087 0.195110368085885 1 0.273826276348602 21.0200588827404 -0.119182640192399 0.0491079986539208
AT3G56050_at 10.9645771094754 11.1737144218742 11.2820357542598 11.3584656158482 11.2614012211012 10.9744340240584 11.2879588603964 11.2991594515025 11.0255033935965 10.7774788215501 11.2580198586619 10.9889914483475 11.3626603316238 11.1764480939479 10.8771716274341 11.0272203737298 10.9961781434552 11.1120410870271 10.8680081336051 0.0784765002064112 0.0749924439252384 0.0772535541679032 0.0776369646183751 0.0764385787823344 0.0764373591665746 0.0763205197779265 0.0765428608600618 0.085490513746979 0.0756257328616408 0.078024379157795 0.0765000274083951 0.075457446880718 0.078710378035865 0.0844875904087056 0.0767375652443334 0.0806916250301712 0.0813569590753276 0.0826630219545673 3 3 - 20809303 20809861 20809615.455 20808934 20812144 - gene protein_coding_gene FALSE TRUE AT3G56050.1|AT3G56050.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G40270.1); similar to ser-thr protein kinase [Gossypium hirsutum] (GB:AAO59488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.12362147364131 1.38041332265796 0.195157305677355 1 0.2736418079144 22.195304050704 0.12362147364131 0.062887113497096
AT1G56410_at 2.4909956586208 2.10194757366306 2.54016717334949 2.38034311138930 1.86932052285717 1.86758755270188 1.90176991667067 2.29551720003091 2.42748708863699 2.70944239100092 2.34491201863138 2.33223227482874 2.37682334543355 2.55227220949541 2.02915359481540 1.98168643731336 2.07323203821005 1.95051456517075 2.21605168453638 0.191712854176159 0.198073690350833 0.191064322022566 0.202637192903255 0.19222404470582 0.192362514975473 0.192530030332552 0.197250145208379 0.200510674140943 0.194951793146818 0.199074508631407 0.192721206342126 0.191064322022566 0.191064322022566 0.194077789327178 0.197031893503545 0.199035077988711 0.196937152094032 0.191064322022566 1 1 + 21122342 21122866 21122576.273 21120812 21122906 + gene protein_coding_gene FALSE TRUE AT1G56410.1 ERD2/HSP70T-1 (EARLY-RESPONSIVE TO DEHYDRATION 2); ATP binding encodes a heat shock protein whose gene expression is induced by heat and dehydration. similar to heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) [Arabidopsis thaliana] (TAIR:AT3G09440.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G02490.1); similar to HSC70-1 (heat shock cognate 70 kDa protein 1), ATP binding [Arabidopsis thaliana] (TAIR:AT5G02500.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABD32895.1); similar to non-cell-autonomous heat shock cognate protein 70 [Cucurbita maxima] (GB:AAN86274.1); similar to heat shock cognate protein HSC70 [Brassica napus] (GB:AAB88009.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.139546704038 -1.38033279751811 0.195181382224074 1 0.273547205111049 4.50900460459979 -0.139546704038 0.0997044303751921
AT2G35500_at 7.73876030117282 7.43868534502662 6.77593788828892 6.61635329762198 7.53796666173263 7.50942771384765 8.11087470357123 7.7965192073884 7.31769725227244 7.8768407874609 7.75945394926498 8.36772136998014 7.63671235403279 7.82731738278734 8.94752115036746 7.89808774440075 8.08682932200371 7.90913255619761 7.76658683996894 0.134600955361404 0.133379869698903 0.142094748671566 0.138194501622284 0.134116059255084 0.132437677760312 0.133314023934304 0.136991015008719 0.156183209903886 0.137093179417981 0.141380324219380 0.134583127300129 0.132437677760312 0.140565150560068 0.138332125857785 0.140099586755261 0.135294161300262 0.143994466164437 0.137368671923390 2 2|0 +|/ 14921980 14922960 14922708.889 14921082 14923214 + gene protein_coding_gene FALSE TRUE AT2G35500.1 shikimate kinase-related similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G26900.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58188.1); similar to Os10g0577700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065493.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052) -0.130449906760853 -1.38008122041361 0.195256618331350 1 0.273251670558337 15.294468275763 -0.130449906760853 0.080269400071484
AT4G32170_at 2.65664928210197 2.73591809357547 2.5992464498661 2.81820427051357 2.32894703663963 2.46820750037631 2.60544335473880 2.48881441432473 2.78464556404965 3.04413170222104 2.87103269666127 2.73894312077234 3.02888393432321 2.8230780388223 3.19827103895396 2.37618029512494 3.06870556617328 2.58336869266811 3.19328915694424 0.206029100758311 0.206038563464798 0.207189950080441 0.210736541918981 0.21187416185476 0.207972515881127 0.208927989789453 0.211080255383975 0.217063573574676 0.210866639175181 0.206128050175434 0.208720010629360 0.205798045003079 0.205439057482298 0.204984688401555 0.215035169354416 0.211699998093661 0.211109890062212 0.209103463681387 4 4 + 15534701 15535256 15535059.273 15533766 15535339 + gene protein_coding_gene FALSE TRUE AT4G32170.1 CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2); oxygen binding member of CYP96A similar to CYP96A8 (cytochrome P450, family 96, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G47620.1); similar to CYP96A11 (cytochrome P450, family 96, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39500.1); similar to CYP96A12 (cytochrome P450, family 96, subfamily A, polypeptide 12), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39510.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.119676261651946 -1.37948299583182 0.195435619597544 1 0.272549066157947 5.50938549893828 -0.119676261651946 0.0511088342736040
AT2G37700_at 2.85314745183947 2.45471797020921 2.85285021233633 2.09065018708241 2.45862732868105 2.37078606799623 3.01793370238081 3.11549069544834 2.41209109850141 2.48049170224911 2.01747027772733 2.74810254240627 2.19413933279885 2.25925575480463 2.56507310921072 2.45019953969040 2.67008057819839 2.0956580965607 1.99108971579261 0.444679446513841 0.441656348042188 0.464997695970002 0.460405628876974 0.462367827349809 0.433905274631585 0.452337148234709 0.433905274631585 0.460114207900168 0.433905274631585 0.433905274631585 0.433905274631585 0.433905274631585 0.445264618399715 0.435588264910987 0.451216002352226 0.434559554870741 0.439372305048023 0.433905274631585 2 2 - 15818797 15818897 15818843.5 15818706 15821286 - gene protein_coding_gene FALSE TRUE AT2G37700.1 CER1 protein, putative similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT1G02190.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28319.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) -0.168327053767586 -1.37902538850621 0.195572637954444 1 0.272011753561443 4.98655290671625 -0.168327053767586 0.150560380498258
AT4G11010_at 9.77556354219924 9.83158926050275 10.0481353267217 9.68374314122121 9.80918759312167 9.18763068862145 10.6941294298109 10.3139982714245 8.82137649041545 9.9086393675352 10.2663455957371 10.5355917035801 9.93718064318094 10.2504237461212 10.408461094434 10.0211222195338 9.8023695854875 9.98905600844816 9.3334538279177 0.144984006102218 0.141919950310654 0.140630068449905 0.156551589341886 0.142422067447558 0.156334957698492 0.142382465137352 0.139969309361885 0.167691413040204 0.144287773504886 0.144493888326711 0.142781410348102 0.139863557655501 0.142539159830633 0.147653902729291 0.139259600043576 0.158975091335444 0.141435992635151 0.149038288599844 4 4 - 6732778 6733833 6733279.364 6732576 6734357 - gene protein_coding_gene FALSE TRUE AT4G11010.1 NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase 3 (ndpk3) Identical to Nucleoside diphosphate kinase III, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III) (NDPK3) [Arabidopsis Thaliana] (GB:O49203); similar to nucleoside diphosphate kinase 4 (NDK4) [Arabidopsis thaliana] (TAIR:AT4G23900.1); similar to putative nucleoside diphosphate kinase III [Thlaspi caerulescens] (GB:AAY18431.1); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) 0.162591495356525 1.37876254731437 0.195651375113035 1 0.27170318574055 19.6709015166303 0.162591495356525 0.141307714373701
AT1G74390_at 2.17216018041095 2.60017664227616 2.57617418093385 2.20017199369278 2.48847118542444 2.43406831320250 2.44506141814588 2.48213236007759 2.44009326714522 2.42213784942026 2.83676468891773 2.75853365188073 2.50699476107960 2.27464810133442 3.05646345084141 2.59750572591708 2.34075489758053 2.62414051313968 2.17611944400184 0.197491596331440 0.200137640979486 0.206795891238093 0.195265638840173 0.195450864311161 0.208269779628423 0.193405766119646 0.199839912194046 0.202208492893310 0.197562978000014 0.207877643710108 0.195906027381595 0.193484459966963 0.201441507284928 0.202080361519757 0.198643119297865 0.199369674086118 0.198853923879195 0.197740032854815 1 1|0 -|/ 27965448 27966028 27965717.3 27965198 27967508 - gene protein_coding_gene FALSE TRUE AT1G74390.1 exonuclease family protein similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G61390.1); similar to Os10g0407500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064570.1); similar to exonuclease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66074.1); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) 0.139098819199853 1.3781551630478 0.195833425672877 1 0.270990286967737 4.91009832294994 0.139098819199853 0.0992479682347783
AT3G54420_at 4.42976034415298 5.21364684022014 5.20883486965414 5.66512748207478 3.45581537679987 3.84211878302415 2.06846918104265 2.76717160667313 3.44438479391605 3.80392129012599 3.23187944352237 2.34296828197635 2.35399832128292 2.77610389715073 2.64526273429409 2.60776691489612 3.06754820907626 3.97414252667765 2.90202758718488 0.272855333345561 0.272771287289812 0.277967971043347 0.281089959931856 0.268856548851714 0.280224676133672 0.273619970581536 0.278306862669515 0.272317958577824 0.268626920980966 0.265958005787787 0.26451217486798 0.276849869482456 0.272254193447747 0.267194831357987 0.269456007562912 0.276215984707560 0.268329448517603 0.270891157802570 3 3 + 20157161 20157985 20157614 20156888 20158041 + gene protein_coding_gene FALSE TRUE AT3G54420.1 ATEP3 (Arabidopsis thaliana chitinase class IV); chitinase encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43590.1); similar to chitinase [Phaseolus vulgaris] (GB:CAA40474.1); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 0.207363184449964 1.37812585162400 0.195842214734991 1 0.270955888962224 7.21056973454783 0.207363184449964 0.209109648166638
AT3G30490_at 0.591258697254982 0.278241679002559 0.587247124870149 0.606204648230415 0.0465726252750475 0.947849078689967 0.199418762201871 -0.0222590686634676 -0.405504099983125 0.222232089714296 0.193789103082043 0.353493263736486 0.225585807860535 0.772626082272614 -0.096877250427441 -0.00164443319263287 0.330422334498313 -0.554069886551816 0.415877587516892 0.310340854546968 0.308196532506062 0.315057372336053 0.310168241517022 0.308196532506062 0.316842942030867 0.313596806574265 0.323244824048389 0.328222296436246 0.328725126878336 0.308196532506062 0.308196532506062 0.34183762520619 0.313098684996142 0.308196532506062 0.315913415687876 0.310801906913911 0.320969704010656 0.346915412133532 3 3|0 -|/ 12118191 12118399 12118326.4 12117914 12118455 - gene protein_coding_gene FALSE TRUE AT3G30490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24910.1) 0.180341893530575 1.37780329646570 0.195938955050210 1 0.270577391689852 0.519542103395582 0.180341893530575 0.169538762293056
AT4G02560_at 5.94582762484895 5.88601281035552 5.92918736980766 6.12071205794704 6.71598290854236 6.08293336375248 6.3831253371341 5.96519647961515 6.099153083509 6.25084833859434 5.67222394846991 6.05443598509118 5.40750518367876 5.7931700579649 5.49339493716879 5.80583057796375 5.63361983489821 5.64220315623028 6.16976693098939 0.227586685535068 0.220961776917108 0.232215186839894 0.216634011757039 0.221159295559901 0.233255095589165 0.225471181427148 0.223531884340711 0.239979797531703 0.223828172948862 0.238022942442431 0.220393257042744 0.217382916575447 0.222058672143021 0.228408151668222 0.231301640733263 0.225401071624595 0.222700880499596 0.221332892837770 4 4 - 1123679 1124487 1124003 1123490 1128421 - gene protein_coding_gene FALSE TRUE AT4G02560.1 LD (LUMINIDEPENDENS); transcription factor Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants. Identical to Homeobox protein LUMINIDEPENDENS (LD) [Arabidopsis Thaliana] (GB:Q38796;GB:O22771;GB:Q9C5Z9); similar to Homeobox protein LUMINIDEPENDENS (GB:Q38796); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.159147397745202 -1.37769841817521 0.195970418620393 1 0.270454336850974 12.0591492829408 -0.159147397745202 0.135787358699504
AT3G13420_at 2.20809892490355 2.46117505842767 2.13563290721438 2.48012659466161 2.25626694789467 2.34798562333444 2.14444157488274 2.70449073156216 2.66398926430037 3.1571683712574 2.71274619914008 2.34014715942630 3.05066184693709 2.78430153112228 2.65923411300714 2.73849927610667 2.8880728650499 2.55622903142957 3.01397722797918 0.240414371525959 0.226625965138833 0.231922861095972 0.233262010829415 0.227974421444017 0.224020786110394 0.22736749098422 0.237760855641014 0.237926415463462 0.226012694131529 0.227275148145083 0.221075453534288 0.226227700252133 0.225790479958370 0.221075453534288 0.221075453534288 0.228777290208516 0.231743612632184 0.228155359665168 3 3 + 4365530 4366287 4365814.182 4364534 4366798 + gene protein_coding_gene FALSE TRUE AT3G13420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55535.2); similar to hypothetical protein MtrDRAFT_AC146567g1v1 [Medicago truncatula] (GB:ABE90925.1) -0.151678502951344 -1.37756415255239 0.196010704583155 1 0.270296810805254 5.172918024005 -0.151678502951344 0.122952970332125
AT4G20400_at 6.23622015371047 6.70954327727235 6.00078529393603 6.16983441393112 6.96048188490808 6.11224828876993 5.61998469083308 5.4932650182337 5.82720023567493 5.45610211212423 5.49416569185665 5.92316000826572 5.67144610079752 5.92870372542509 5.35888446887153 5.69124988077855 5.42094581997629 5.78525921597142 5.49122023188034 0.198145578792645 0.196758723493127 0.199217558741127 0.193786324093668 0.199564213729173 0.209798715041365 0.195026979727643 0.194514583445618 0.200666639822008 0.197324335712197 0.196294535582983 0.195620038619329 0.193653838190468 0.201866056926764 0.194900299476660 0.192181379602970 0.203394256608656 0.207891637563911 0.197253529234339 4 4 + 11012726 11013530 11013163 11008677 11013871 + gene protein_coding_gene FALSE TRUE AT4G20400.1|AT4G20400.2 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G30810.1); similar to MEE27 (maternal effect embryo arrest 27), transcription factor [Arabidopsis thaliana] (TAIR:AT2G34880.1); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.181901761403449 1.37721453567370 0.196115638499839 1 0.269886674505109 11.7881625729757 0.181901761403449 0.172028043022428
AT4G32720_at 5.4553315794307 5.33677877845589 5.56204364411081 5.44823204702657 5.2683668080031 5.37799911151107 5.05552807788954 4.63651974840767 4.76766452578507 4.65424816438779 4.7986713993565 4.82063055875426 4.90783246733988 4.33555412321287 5.05382412858862 4.97163165563831 5.11972025201724 4.40659380911465 5.08206775932487 0.190069761826672 0.187970283293273 0.190666626995759 0.190765424658714 0.193958511027129 0.188934461915033 0.187531229145309 0.200267278632530 0.192687396653322 0.195811682571394 0.196241611727889 0.191309236431342 0.189425134054230 0.188442763185328 0.19713493153698 0.192025411468436 0.192091787402018 0.205766266027048 0.187472262387723 4 4 + 15788795 15789646 15789175.636 15787214 15789982 + gene protein_coding_gene FALSE TRUE AT4G32720.1|AT4G32720.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G79880.1); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to Os04g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053207.1); similar to hypothetical protein DDBDRAFT_0204655 [Dictyostelium discoideum AX4] (GB:XP_640625.1); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.130134003018577 1.37720674535661 0.196117977218679 1 0.269877536471713 10.0858336988971 0.130134003018577 0.0801665467975623
AT2G25420_at 4.2330946553537 4.6632595479121 4.11739752053652 4.05750317244537 4.50138707509482 4.35398670528091 4.23154454510788 4.30005351412834 5.15088209725447 4.15636071052620 4.48680836494704 4.47698356224422 4.5436850792909 4.64453010981889 3.86125039839119 4.20614009730102 4.46723875318946 4.88547144185013 4.51472558382817 0.193551829619067 0.198100721947387 0.197223682430857 0.196100745311836 0.197401331865061 0.193551829619067 0.201409878376582 0.206282877136544 0.229386666898285 0.193551829619067 0.202594510129101 0.194254813084848 0.196309974130045 0.202630320875999 0.208146946011446 0.197823718175078 0.207507690514172 0.202683996283501 0.194193409810312 2 2|0 +|/ 10827152 10827935 10827541.1 10823828 10828132 + gene protein_coding_gene FALSE TRUE AT2G25420.1 similar to TPR4/WSIP2 (TOPLESS-RELATED 4) [Arabidopsis thaliana] (TAIR:AT3G15880.2); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) -0.130114384304971 -1.37661348785539 0.196296146670683 1 0.269181749075255 8.83419647852348 -0.130114384304971 0.0802513861052504
AT4G27970_at 1.6919009887845 1.68669409321031 1.71164581762013 1.91624836871779 1.68166632273713 1.69444517947985 1.55347489808874 1.86392985033702 2.08586290556271 2.17230962308910 1.9868272864248 1.72303358494301 1.7521102131878 2.17956698287728 2.01758221734889 1.38262135749536 1.64262605602025 2.30485938211105 2.26158806245225 0.191701125083586 0.198513421712927 0.194318485250910 0.193325463812971 0.200550744836057 0.192935902270028 0.194790433175457 0.193772668042949 0.195165168111951 0.195932518644366 0.190187365390574 0.190187365390574 0.196363490236113 0.193075479339901 0.195063780329182 0.190187365390574 0.200908952813794 0.194015861301979 0.205259996005125 4 4|0 -|/ 13918331 13919018 13918641.889 13918296 13920138 - gene protein_coding_gene FALSE TRUE AT4G27970.1 C4-dicarboxylate transporter/malic acid transport family protein similar to C4-dicarboxylate transporter/malic acid transport family protein [Arabidopsis thaliana] (TAIR:AT5G24030.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81510.1); similar to Os01g0385400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043099.1); similar to Os01g0623200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043615.1); contains InterPro domain C4-dicarboxylate transporter/malic acid transport protein; (InterPro:IPR004695) -0.123799340391692 -1.37638605527488 0.196364486018600 1 0.268915064323518 3.74845414758147 -0.123799340391692 0.0643881714007515
AT4G18230_at 6.51251243042886 6.75543226470095 6.21695253710696 6.31388658310639 6.36569771877695 6.6833377710081 6.26107846662991 6.95436717711637 5.73600135395955 6.04918376121517 5.4559738251291 5.73523962518964 5.85253069398212 6.15459104270999 6.22622597402737 5.5179914013716 5.37771397881454 5.36208393108002 5.63527151837563 0.284639496119235 0.272127818344307 0.268519159896956 0.268519159896956 0.281664472597293 0.294734942618324 0.272159093134438 0.280523887703288 0.282522230671510 0.281550239938093 0.279670752079103 0.273761705829271 0.277599293263964 0.274464228555004 0.273183878170698 0.268519159896956 0.286693509112717 0.297457878775901 0.268519159896956 4 4|0 -|/ 10081066 10081630 10081315.125 10080366 10081950 - gene protein_coding_gene FALSE TRUE AT4G18230.1 similar to unknown [Solanum tuberosum] (GB:ABA81886.1); contains domain UDP-Glycosyltransferase/glycogen phosphorylase (SSF53756); contains domain no description (G3D.3.40.50.2000); contains domain FAMILY NOT NAMED (PTHR12154); contains domain SUBFAMILY NOT NAMED (PTHR12154:SF8) -0.161202000515746 -1.37616311834537 0.196431493816939 1 0.268653680136729 12.2664644620534 -0.161202000515746 0.139515838606707
AT3G28320_at 3.34440226172412 3.19739504438001 3.68791681304070 3.50110446329312 3.39456732054036 3.70745330958733 3.4983877994746 3.54240219255073 3.42664820030273 3.28951351237927 2.95997773127579 2.44923330732711 3.59396843522010 3.16562945289814 3.44527010206757 3.27004942659519 4.37060683454699 3.39262810950089 3.05668519087732 0.306805911481203 0.285243783006523 0.283746292557218 0.293826076165558 0.286764127852938 0.286530120590824 0.28368029878194 0.291717321591663 0.291597563463230 0.278100248599536 0.278690819907904 0.297784899270116 0.280330822236683 0.289885457714827 0.293428242721419 0.289923823420601 0.281116992141177 0.281797780082201 0.286375589297584 3 3 + 10583505 10583976 10583684.727 10582941 10584237 + gene protein_coding_gene FALSE TRUE AT3G28320.1 similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28290.1); similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28300.1); similar to Os03g0199100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049283.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE78510.1); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) 0.125209221246107 1.37540116621557 0.196660656940586 1 0.26776054022253 6.77847168029824 0.125209221246107 0.0684266292061894
AT2G01300_at 2.04331549270605 2.30684849636541 2.18682093680192 2.27641746768875 2.20287590315507 1.82260516903272 2.24430071335356 3.53295814513815 2.52132770287057 2.76034260164460 3.13522972463221 2.57718907218524 2.73768177191992 3.39884077887335 2.09083660721253 2.45832188952661 2.71286894086793 3.11757700545549 3.18815379068762 0.257790973472896 0.256538125030614 0.258579511617083 0.251749403092804 0.256475009562602 0.256430732578599 0.258368265139301 0.255918483675828 0.257246378004236 0.252764059108175 0.251749403092804 0.253507609584646 0.263559553099448 0.260200146736922 0.254992791543061 0.251749403092804 0.259009338885488 0.254687379229727 0.252121061219388 2 2 - 151248 151664 151441.455 151056 151728 - gene protein_coding_gene FALSE TRUE AT2G01300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15010.1); similar to Os05g0516700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056047.1); similar to Os01g0121500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041876.1); similar to Os01g0121600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041877.1) -0.227191158643974 -1.37519467514117 0.196722799249585 1 0.267518554739203 5.12793925164775 -0.227191158643974 0.237452250605776
AT3G06380_at 8.54503017169055 8.45029456892063 8.42423026652786 8.37118150353943 8.83436976105993 8.3635138957458 7.890078376085 7.4319362665411 7.37558264347911 7.9027597842873 7.94573471028607 7.70461908855848 7.89765803641823 7.78099341922224 7.26300618569109 7.99970751747164 7.55077617057943 7.19476705693182 8.09790840510995 0.181384355569193 0.182011989646530 0.186997426281430 0.180593496287038 0.180593496287038 0.188032759641866 0.192342601121519 0.197254092223518 0.210917333549184 0.190175350521825 0.183747632631097 0.183714108454271 0.184571970696184 0.196232639092553 0.187420386552973 0.185836026416317 0.216501604732403 0.196431891897889 0.180593496287038 3 3 + 1937376 1937979 1937658.909 1936130 1938227 + gene protein_coding_gene FALSE TRUE AT3G06380.1 ATTLP9/AtTLP9 (TUBBY LIKE PROTEIN 9, TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor Member of TLP family similar to AtTLP11 (TUBBY LIKE PROTEIN 11), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT5G18680.1); similar to Tubby protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95936.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) 0.147031586547511 1.37422222707283 0.197015672693862 1 0.266379281207879 16.0184500433156 0.147031586547511 0.115232635028508
AT3G61720_at 1.9179421426371 2.52801539254687 2.33268342816799 2.28861180480083 1.70523857216064 1.95085587850173 1.59353871035754 2.55959523972076 2.20538916485178 2.25477118959154 1.62911861409208 1.81538166096941 2.19923476265871 2.62045236839635 1.48565573511517 1.81776832974292 2.07554091453303 1.79273385674645 2.29938583901529 0.225182949625650 0.227021721417609 0.22923222274405 0.227584748418920 0.231047949263758 0.221038952529036 0.227418198781408 0.224451244040792 0.22270124122292 0.230549647535888 0.229689451534080 0.223197892494182 0.222907462717034 0.222771112098984 0.221247527086442 0.231225305684616 0.226918124409772 0.226209623396672 0.232122484507643 3 3 - 22853986 22854508 22854158.364 22853986 22856373 - gene protein_coding_gene FALSE TRUE AT3G61720.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G03435.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to Os05g0370600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055351.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.202060867306104 -1.37410134481124 0.197052104418312 1 0.266237699602381 4.20089406849567 -0.202060867306104 0.202387022943153
AT1G36390_at 5.70398791532599 6.4192625697761 5.76757738271881 5.57414525612023 6.34782238568135 5.3663998277207 7.01842960099574 6.69826906595872 5.93751402227439 6.52625291129732 7.11796668986383 7.52631727400248 6.067704375355 6.74723228444715 7.19038184808757 6.74335260649339 5.34118584787142 6.08756596507171 6.54270734410619 0.243503269035014 0.233775195253278 0.243555868329711 0.233775195253278 0.233989360116837 0.247674634943413 0.234183568770737 0.243925301303914 0.247475988879338 0.24076167636886 0.236265836379035 0.236506445320264 0.235089912017876 0.252724026080686 0.236017103579106 0.235775062275364 0.244744084259029 0.245969105923543 0.239749459587894 1 1|0 -|/ 13703025 13704387 13703636 13702613 13704784 - gene protein_coding_gene FALSE TRUE AT1G36390.1|AT1G36390.2 co-chaperone grpE family protein similar to EMB1241 (EMBRYO DEFECTIVE 1241), adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization [Arabidopsis thaliana] (TAIR:AT5G17710.2); similar to co-chaperone CGE1 precursor isoform b [Chlamydomonas reinhardtii] (GB:AAK96224.1); similar to Os04g0431100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052822.1); similar to Os02g0612000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047409.1); contains InterPro domain GrpE protein, head; (InterPro:IPR009012); contains InterPro domain GrpE protein; (InterPro:IPR000740) -0.214389569723717 -1.37409955152763 0.197052644923902 1 0.266235599308512 12.5810891441831 -0.214389569723717 0.219903852571108
AT2G02700_at 2.15625994343223 1.96104803141908 2.00363928411159 2.35621505691373 1.48198411255887 2.12781281531339 1.67087394458899 2.11824208948400 2.13242835445909 2.53285209076562 2.22147766323501 1.694202848326 2.12097856232881 2.06341090439489 1.9991510069662 1.88568620931853 2.05691824962551 1.82159502343293 2.34562694889791 0.188476913534932 0.185629012512091 0.188067257693352 0.187344276999380 0.185919793761323 0.185982379169556 0.188763362049701 0.190847345816134 0.190001014122545 0.184173604474224 0.190068226769658 0.186438390422658 0.192225485845100 0.186325865657724 0.184792210747230 0.182974499392088 0.190867814918628 0.182974499392088 0.192155068840251 2 2 + 757378 757895 757678.273 756442 757941 + gene protein_coding_gene FALSE TRUE AT2G02700.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02680.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G02690.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.169117378963700 -1.37401373802745 0.197078511035612 1 0.266135096709066 4.14445775464158 -0.169117378963700 0.152803479369603
AT2G29050_at 1.51802611672035 1.71254403631617 1.79941626553092 1.26350404588965 1.82007596281424 2.14198711936051 2.62571609850573 1.79054273376826 1.86875140189589 2.31130033225819 2.7883875421264 2.64942743021839 2.31749902082801 2.11777451631095 2.81600929917197 2.3253168841666 2.68064904752576 2.56217132499138 1.81504641703934 0.198226657737728 0.193262550546024 0.184353691046423 0.193927070657506 0.186178146183589 0.190408309837876 0.186032445669259 0.192771753844447 0.197133658635764 0.186010024014937 0.187255807317819 0.184353691046423 0.187958056266146 0.191967996539652 0.185503448275813 0.186513703711185 0.186047381076592 0.19749913383038 0.184568107818925 2 2 + 12486236 12486689 12486477.273 12485223 12487449 + gene protein_coding_gene FALSE TRUE AT2G29050.1|AT2G29050.2 ATRBL1 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 1) similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT3G53780.2); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os11g0704800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068547.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610)|similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os11g0704800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068547.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) 0.189163467420418 1.37362515570797 0.197195673976972 1 0.265680052317432 4.09923676414585 0.189163467420418 0.183648465470314
AT1G50000_at 4.42787735138776 3.93053476216792 3.93729085551122 3.28794772065334 4.32911444649628 4.03943585336468 3.93022829424541 3.56567710505558 4.03839483849711 4.16105666597267 3.79731851093852 3.61146956914071 3.62025505230013 3.91555294507836 3.83155900038693 3.85137161933062 3.96092207471557 3.74330059869997 4.03203751458127 0.195580491656286 0.196401071633992 0.194561216689080 0.197423869755698 0.210382491038576 0.197677209307811 0.204019606435756 0.191042999620307 0.194218721560438 0.196613161706293 0.202697127271852 0.192103230221401 0.194891928368968 0.206370024630898 0.198716738279379 0.195756905558382 0.195875209654757 0.200139293371217 0.194058773656125 1 1|0 -|/ 18518869 18519958 18519289 18518727 18520913 - gene protein_coding_gene FALSE TRUE AT1G50000.1|AT1G50000.2 similar to Os03g0729700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051157.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57054.1); contains InterPro domain Protein of unknown function DUF558; (InterPro:IPR006700)|similar to conserved hypothetical protein [Geobacter sp. FRC-32] (GB:ZP_01389023.1); similar to Conserved hypothetical protein 46 [Chlorobium phaeobacteroides BS1] (GB:ZP_00531120.1); similar to Os03g0729700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051157.1); contains InterPro domain Protein of unknown function DUF558; (InterPro:IPR006700) -0.175413247117144 -1.37318216571252 0.197329312589818 1 0.265161401217636 7.86532913744737 -0.175413247117144 0.162874450538051
AT4G32450_at 1.90234328919279 1.68943384228771 2.24443216364676 2.24143499591043 2.22334322593208 1.95090765169076 2.21537454898704 1.89246433006701 2.1225227288056 2.0402097953741 2.38103222873006 2.13584361909943 1.94220341471184 2.07063573823249 2.13729728747836 2.49059052439224 2.32977255192701 2.2214789287155 2.41575949709493 0.191236664768836 0.187611746345386 0.197254617434740 0.197389431863116 0.187433167162632 0.190645178521859 0.192729493552088 0.190743823235912 0.197406581924269 0.192434645079719 0.192227432688291 0.187917171540677 0.199811640282262 0.194106713692280 0.185486826488394 0.189955915413498 0.192375633834981 0.198086071523229 0.194415429841576 4 4 + 15662146 15662633 15662392.273 15660933 15662885 + gene protein_coding_gene FALSE TRUE AT4G32450.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G25580.1); similar to Putative selenium-binding protein, related [Solanum demissum] (GB:AAT66765.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.130450809782015 1.37276458894157 0.197455353978172 1 0.264672607961369 4.24818548617386 0.130450809782015 0.0818736167614868
AT1G31170_at 10.0416358422101 10.1722402401256 10.6513350145207 10.5896262133903 10.5028294312215 10.3554177910356 10.6041891300792 10.7150153548450 10.2696926710991 10.3546874979697 10.5035293296525 10.20381205072 10.4649392392793 10.4916137930545 10.0047188910397 10.5884480344675 10.4291614909054 10.4003800794787 10.2603053058299 0.0990168941417244 0.0897572735370854 0.09312388060453 0.0949124784548924 0.0897297878397712 0.0937698856992494 0.0891283932285144 0.0913328931702431 0.0968068197544904 0.0888734361222254 0.0900921550295292 0.09271672843898 0.0902882901795277 0.100321525407999 0.0956491036027347 0.0897645938498335 0.0928090930274133 0.0968111045182386 0.0899511732558685 1 1|0 +|/ 11133670 11134050 11133825.667 11133466 11134386 + gene protein_coding_gene FALSE TRUE AT1G31170.1|AT1G31170.2|AT1G31170.3 parB-like nuclease domain-containing protein|AtSRX (SULFIREDOXIN) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress similar to ParB-like nuclease [Medicago truncatula] (GB:ABC75369.1); contains InterPro domain ParB-like nuclease; (InterPro:IPR003115) 0.116231088001072 1.37263478108349 0.197494548890628 1 0.264520682351880 20.7943963881157 0.116231088001072 0.0405399262904113
AT4G00416_at 1.10524944241366 1.36814188417090 0.902995481445374 1.77900921366010 1.17841018708005 1.16100914557645 0.780152480516259 1.50172559714407 2.30780171718601 1.83297726567737 1.38507969928340 1.54685791905681 1.58367813956230 1.11452159952876 1.49691494654208 1.64317992770709 1.13235822532759 1.81983129985356 1.66264800235334 0.217280928226349 0.216085483283793 0.214057075005512 0.219057426022035 0.222281509287965 0.223613808392457 0.214414687350355 0.223307415667931 0.229556017328536 0.223652385465660 0.227668286231483 0.220643786946667 0.218799505623801 0.215682212509756 0.220455654204390 0.2185534401509 0.228357509632774 0.221894304069382 0.233185789086675 4 4 + 179033 179449 179255.091 179022 179513 + gene protein_coding_gene FALSE TRUE AT4G00416.1 MBD3 (methyl-CpG-binding domain 3); DNA binding Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. similar to MBD4 (methyl-CpG-binding domain 4), DNA binding [Arabidopsis thaliana] (TAIR:AT3G63030.1); similar to putative methyl-binding domain protein MBD111 [Zea mays] (GB:AAK40310.1); similar to Os05g0404600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055505.1); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739) -0.201317143125967 -1.37262703694633 0.197496887404290 1 0.264511619012487 2.92197586967416 -0.201317143125967 0.201627848704065
AT3G47770_at 1.9651764085263 1.82379908496888 1.96330617147764 2.14422165044243 1.56874697933906 1.86708835192935 1.54037484395654 1.65650119950643 2.38817944704233 2.43204661724516 1.55432614230072 1.59592868388767 1.81989528440458 2.02356302885296 2.28606560477267 1.9451333913435 1.92542651588068 2.40197479765944 2.1791920341864 0.185840537276674 0.187153181302213 0.188023008752929 0.186629696776084 0.188513974838936 0.196266749516684 0.190216872541076 0.186370130775175 0.199964531762582 0.185786461263780 0.190286254816192 0.189876005440845 0.189544347112360 0.189142095680311 0.190127537171174 0.189887367178159 0.195302832557622 0.189670522414573 0.19153761561329 3 3 + 17632978 17633636 17633426.727 17629040 17633663 + gene protein_coding_gene FALSE TRUE AT3G47770.1 ATATH5 (ABC2 homolog 5); ATPase, coupled to transmembrane movement of substances member of ATH subfamily Identical to Putative ABC2 homolog 5 (ATH5) [Arabidopsis Thaliana] (GB:Q9STT6); similar to ATATH3 (ABC2 homolog 3), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G47750.1); similar to ATATH4 (ABC2 homolog 4), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G47760.1); similar to ATATH6 (ABC2 homolog 6), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G47780.1); similar to ABC2 homolog 2 (GB:Q1PEH6); similar to putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99368.1); similar to ABC transporter, putative [Medicago truncatula] (GB:ABE91253.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.124861140481302 -1.37261184890773 0.197501473835974 1 0.264493843815119 3.9547411099162 -0.124861140481302 0.0681780169615204
AT3G28770_at 0.956860164200852 0.816506014618166 0.893061145784293 1.52586790066153 1.53245662696659 0.861843168215447 2.18584690198846 1.86753126044007 1.94518856163455 1.65425546950568 1.3671503519271 1.37018581254448 1.92827702344069 1.88638893003774 0.973835630557762 1.65915893040845 1.75962388070119 1.56588166446209 1.41371152252019 0.248735436043190 0.242672286867386 0.235409627183865 0.239839087772034 0.237529759254716 0.245550043325684 0.252198823374878 0.239314137741556 0.234023382244161 0.244279841595363 0.241640080041878 0.239043067289054 0.234023382244161 0.235127949417084 0.239820522854891 0.238175899403832 0.241098817466449 0.23505338687323 0.234917497838621 3 3 + 10803849 10804387 10804109.091 10797953 10804474 + gene protein_coding_gene FALSE TRUE AT3G28770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76780.1); contains InterPro domain Protein of unknown function DUF1216; (InterPro:IPR009605) -0.180308974057561 -1.37252862876146 0.197526605949421 1 0.264396450168508 2.94742896247446 -0.180308974057561 0.170543675314790
AT4G22640_at 0.900351027672988 0.828080027626288 1.44550324403744 0.93379089831588 0.81475111097296 0.771147848508582 1.29699639196146 0.84625810589938 1.28442488240803 1.88142373767763 1.03738057177765 1.32080676637271 1.29256136279367 0.77135009801241 0.869534741883264 1.02762952660157 1.47857662635559 0.925934140816022 1.06873268767343 0.178556534027148 0.180475657246171 0.191955309369604 0.177948780744225 0.178568326032830 0.188597796166999 0.179099992955662 0.177481579061587 0.186539941429965 0.181722319471703 0.181244196063236 0.180817087430907 0.183353342155777 0.187196683532416 0.179675607967748 0.181751068450207 0.178979431251504 0.181102840037557 0.177727157555834 4 4 + 11911688 11911967 11911822.182 11911611 11912118 + gene protein_coding_gene FALSE TRUE AT4G22640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22666.1); contains domain Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin (SSF47699) -0.148839243045531 -1.37227527467069 0.197603134206760 1 0.264099971223012 2.23060924783086 -0.148839243045531 0.118909947064298
AT3G54950_at 3.6098289282706 4.04379929854638 4.04782580771308 4.71654858736882 3.19171455335035 3.5501155108286 3.649913983838 4.06223518927118 2.22869593143459 2.44573123669248 2.44961279957392 2.85372284934516 2.85304684952295 2.25036518440157 2.82167949590047 2.69169588012619 3.11651438565273 2.55640708896563 2.45959563198243 0.220758390269375 0.229167129683179 0.225906622359142 0.22755666787931 0.222143016443579 0.235041523176542 0.219842783039591 0.225861954088912 0.230749154937176 0.229180246251551 0.22792265925133 0.228021283160686 0.224818805929005 0.225839254390407 0.229603274888135 0.219842783039591 0.22104070004735 0.233891872889597 0.235946500383374 3 3|0 -|/ 20370123 20370859 20370682.7 20369873 20372210 - gene protein_coding_gene FALSE TRUE AT3G54950.1 PLA IIIA/PLP7 (Patatin-like protein 7) similar to PLA IIB/PLP6 (Patatin-like protein 6), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT2G39220.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) 0.178114865741625 1.37221077533003 0.197622620863798 1 0.264024499024123 6.39756681575966 0.178114865741625 0.167244638230015
AT1G62440_at 2.98334728886359 2.52419150735234 2.84251855197048 3.07399336185840 2.62810954084149 3.12911973942462 2.52673355521200 2.93665151875789 3.11973422328682 3.06316734869324 3.24721782786196 3.07377828131373 3.4987411621251 3.16852366490963 3.49009229137507 3.02778842198834 3.44902724963205 2.88714310501725 3.05783747957475 0.202901271639866 0.199994962869068 0.211466789086769 0.208242976499121 0.209841897391151 0.199917260754741 0.212421685669483 0.203266871988310 0.212211995198977 0.211342815752152 0.206946189723583 0.198446823298659 0.203635891282894 0.198446823298659 0.204098677571211 0.205383198442109 0.203766838691586 0.209052018255315 0.198446823298659 1 1 + 23118396 23118869 23118632.818 23115483 23118958 + gene protein_coding_gene FALSE TRUE AT1G62440.1 LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2); protein binding / structural constituent of cell wall encodes a paralog of LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1) which acts synergistically with LRX1 in root hair cell morphogenesis. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G18670.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G12040.1); similar to extensin-like protein [Lycopersicon esculentum] (GB:AAD55979.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210); contains InterPro domain Extensin-like protein; (InterPro:IPR003883) 0.162873490493457 1.37211600938217 0.197651254635041 1 0.263913615531824 5.98585080855818 0.162873490493457 0.143065932272268
AT3G25220_at 8.23210048386869 8.69606883233035 8.42049828176594 8.66917980640496 8.64313217234726 7.82481842069973 8.3673659662335 8.52596776550406 7.38873019440017 7.93041715497876 8.30883864209672 8.39218135237637 7.86871424380397 8.5235761177359 8.32304478442525 7.9874371768588 7.53690606192343 7.7615413234868 7.66454432133024 0.168393627326710 0.169137809830763 0.167732093417599 0.171127349306069 0.171677663612228 0.172007402819282 0.174851948471688 0.165638203233382 0.198744790593003 0.176597168227564 0.172170015363217 0.164907029275892 0.169853863804751 0.179188313154394 0.174109022010312 0.171017470654332 0.174776461654213 0.185657687373331 0.166822899472281 3 3|0 +|/ 9183954 9185660 9185028.9 9183853 9185916 + gene protein_coding_gene FALSE TRUE AT3G25220.1 FKBP15-1 (FK506-binding protein 15 kD-1); FK506 binding / peptidyl-prolyl cis-trans isomerase immunophilin (FKBP15-1) Identical to FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-1) (FKBP15-1) [Arabidopsis Thaliana] (GB:Q38935;GB:Q9LSF4); similar to FKBP15-2 (FK506-binding protein 15 kD-2), FK506 binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G48580.1); similar to putative immunophilin [Hordeum vulgare subsp. vulgare] (GB:CAD42633.1); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) 0.180290407127837 1.37207655902586 0.197663175681893 1 0.263867457097792 16.2968967260150 0.180290407127837 0.170606013468127
AT2G35080_at 1.71359435063789 1.90509736074993 1.87594910040932 1.97137988799436 2.21804805406162 2.05685600947769 2.11869812094639 2.0096399977832 2.17612257900534 2.30186383777327 1.75300228520731 2.06484563885199 1.86400279340096 2.1927389096379 1.1326054305853 2.03570742541345 1.64109702034917 2.09480496533344 2.05779751737779 0.186076341313816 0.192204394294549 0.184658777448397 0.187858541693449 0.189981528219984 0.195003488780641 0.184658777448397 0.189271369008663 0.199184795306708 0.193376507933188 0.187547555827676 0.189964281889392 0.189190940076560 0.188562392464512 0.194904239728484 0.188102490056504 0.193168193356097 0.193178746313142 0.205149643182523 2 2|0 -|/ 14796366 14798104 14796902.9 14796324 14798527 - gene protein_coding_gene FALSE TRUE AT2G35080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29750.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.118721640332483 -1.37206126398737 0.197667797674238 1 0.263849561557424 3.99663046191567 -0.118721640332483 0.0500534963035934
AT1G01430_at 8.99594950268007 9.15284762957858 9.00850727060874 9.20440446685518 9.91503382444266 9.81238892155716 9.96719857953376 10.1956363009733 9.81739948947484 9.89533022693674 10.0188597722898 9.5841789461251 9.95002547940585 9.67322967850904 9.56279760805784 9.50451963725541 9.45533659946674 9.84125740588773 9.8390447396336 0.0974545110018855 0.101258772942612 0.101876488398743 0.0987677288650878 0.0980098779633977 0.100832716489014 0.0999376343027263 0.101296317306559 0.104475308134207 0.0974545110018855 0.0974545110018855 0.09989798879587 0.099860056809501 0.102296175826723 0.101167571966980 0.102988144487704 0.104197926438659 0.0974545110018855 0.097884488874838 1 1 - 157008 157526 157290.182 156801 158655 - gene protein_coding_gene FALSE TRUE AT1G01430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01080.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.122320113399595 -1.37186741527504 0.197726384446396 1 0.263622765946797 19.3061793751402 -0.122320113399595 0.0613581905325109
AT2G29020_at 9.0903354466495 9.69057416921041 9.26408885920712 9.551965860327 9.78664006412719 9.61169469337389 9.01268972195544 9.07882705616077 9.47449598436186 8.95715732989822 9.39916088103138 9.20701453126494 9.34201846710051 9.20406082468753 9.1655578032777 9.15857191289212 8.43329570371618 9.16086210101699 9.08117621555753 0.146686343784230 0.133512204183129 0.140013367294838 0.134095493806435 0.133643250439682 0.134079600657442 0.129334625173709 0.129334625173709 0.156127690116299 0.133528829412883 0.136297464547932 0.134264046380969 0.129334625173709 0.139633563572315 0.135207985252041 0.130683283006783 0.161916171867389 0.146713365727288 0.131669857226755 2 2|0 +|/ 12477014 12478474 12477856.125 12476801 12478777 + gene protein_coding_gene FALSE TRUE AT2G29020.1 Rab5-interacting family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59410.1); similar to Os05g0110600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054441.1); similar to hypothetical protein [Oryza sativa] (GB:AAK73154.1); contains InterPro domain Rab5-interacting; (InterPro:IPR010742) 0.149182686141158 1.37159584177083 0.197808486328439 1 0.26330507195709 18.5382324612411 0.149182686141158 0.119663229675101
AT3G28470_at 0.139872610260822 0.0530300176754677 0.122311533417273 0.270661827732299 0.281450315138412 0.341060197150634 0.116342564447013 -0.023143152848624 0.393408078742632 0.47087438963258 0.662352638772717 0.292626872190473 0.585883984839813 0.340612056231251 0.591410682998087 -0.130004488742905 0.51352423210201 0.471982641740976 0.235289083198627 0.199111164400709 0.198199885776323 0.198944173651218 0.196306243423772 0.196431601773354 0.200851186465087 0.199419414718116 0.194792313386775 0.196545521679426 0.204336956635426 0.196792531198874 0.195546067841627 0.199592263594217 0.197266561449804 0.197091294960878 0.199996305686559 0.197110950379991 0.203660827298827 0.199965622392535 3 3 - 10675831 10676298 10676072.818 10675745 10676961 - gene protein_coding_gene FALSE TRUE AT3G28470.1 AtMYB35 (myb domain protein 35); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB103/AtMYB80 (myb domain protein 103, myb domain protein 80), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G56110.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE78637.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.115935092733962 1.37158328221083 0.197812284013314 1 0.263290380481361 0.553984453142245 0.115935092733962 0.0396740976170364
AT4G22460_at 2.01165863489129 2.22225592488446 2.32336956794724 1.78179598501279 2.30033140340154 2.32745765750407 2.62105540023722 2.58984485421105 3.01888534900606 2.37883292686629 2.53136917483897 2.87894139169859 2.55993781750847 2.46187948235396 2.77488207872130 2.69052137400578 2.07972220485511 2.59695056470871 2.61898269645034 0.180014893186965 0.178452626727005 0.188469425419188 0.184963000423323 0.174839258808137 0.179418266776481 0.189088606785226 0.190527734178307 0.174893002085537 0.174762921360761 0.184087658091981 0.174617498318592 0.179035059016943 0.184479049890993 0.180037303775269 0.175133529738319 0.186784602794697 0.191443096743043 0.183585029762988 4 4 - 11839180 11839547 11839361.545 11839172 11839573 - gene protein_coding_gene FALSE TRUE AT4G22460.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to extensin like protein [Populus nigra] (GB:BAA11854.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.139211598222064 -1.37154715959565 0.197823206893818 1 0.263248126762633 4.89422576277483 -0.139211598222064 0.100812785511746
AT2G17220_at 8.74097074636747 8.79099202168267 9.35764245547101 9.37556568565003 8.58004759142157 8.20730520870482 8.54845356071932 8.39372658512647 8.403544965081 8.02309613850518 8.08438683579227 8.01705764268875 8.47877814279628 8.21582816061268 7.74425941079166 8.0219285611804 8.14604476992704 8.35775489680538 8.00423279789348 0.144780963420468 0.146210758086481 0.146539973730781 0.146474632587457 0.146908787692235 0.15348893291899 0.14879223819573 0.147495857815802 0.159154501979605 0.158589355577817 0.152121402493196 0.148642389532652 0.143516246557001 0.151696931187438 0.150986638445644 0.148255167583217 0.152936926823273 0.151409837753617 0.148255055066504 2 2 - 7494949 7495516 7495220.636 7494736 7497258 - gene protein_coding_gene FALSE TRUE AT2G17220.1|AT2G17220.2 protein kinase, putative similar to CONNEXIN 32, kinase [Arabidopsis thaliana] (TAIR:AT4G35600.1); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to CONNEXIN 32, kinase [Arabidopsis thaliana] (TAIR:AT4G35600.1); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.125617337792819 1.37138839348058 0.197871221110862 1 0.263062422200374 16.8877777000933 0.125617337792819 0.0704442367130672
AT1G70230_at 7.023395908211 7.31376267507074 7.42624709484168 7.91804364645144 7.87712021592972 7.41178212443994 8.90637141118836 9.09170402774878 8.84264405393362 8.40366218053552 9.02451071888347 8.36086347647237 8.79986608541391 8.83079654934848 8.43488533025147 8.64695414477647 8.47933080362826 8.37503258787204 8.26950012151253 0.181560505897933 0.177341786612731 0.183772224908336 0.179341114823129 0.177469192223456 0.186483004617538 0.173876702967464 0.174891379739291 0.183066731611340 0.170695756509046 0.174943479041249 0.173555129185458 0.174222714957248 0.177356124635042 0.174787000574806 0.175435001659160 0.178113038898175 0.182127821700297 0.173528252182526 1 1 + 26454845 26455327 26455095.273 26453908 26455608 + gene protein_coding_gene FALSE TRUE AT1G70230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01430.1); similar to Protein of unknown function DUF231, plant [Medicago truncatula] (GB:ABE83215.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.155874529192717 -1.37138551538979 0.197872091595954 1 0.263059055908041 16.4332027616892 -0.155874529192717 0.131460554273496
AT4G11820_at 7.49516339120999 7.85792900533175 7.07674311104048 7.11137259889638 7.25703839624417 7.02624909846841 7.75635560478415 7.50892671320303 7.66280227829057 7.67469808905138 8.4926992718987 8.12555235756987 7.6755918786086 7.99302876876201 8.36195165759976 7.70045946865045 7.28701202519444 7.85345289853846 7.65381430234179 0.187887137203289 0.186713675692523 0.181263769324304 0.186619516601759 0.181901313566363 0.191899351900857 0.185120359813607 0.182839956904311 0.189965008409210 0.186638804402050 0.197134126311167 0.185012559018610 0.179464154244325 0.197669720312227 0.188800952975696 0.183531007471164 0.197171768843836 0.200618741028201 0.188582557221082 4 0|4 /|- 7109165 7109898 7109547.5 7108909 7112474 - gene protein_coding_gene FALSE TRUE AT4G11820.1|AT4G11820.2 BAP1 (hydroxymethylglutaryl-CoA synthase); acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase|BAP1 (hydroxymethylglutaryl-CoA synthase) Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. Identical to Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (HMGS) [Arabidopsis Thaliana] (GB:P54873;GB:Q8L721;GB:Q9S707); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32923.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAF69804.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32922.1); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, N-terminal; (InterPro:IPR013528); contains InterPro domain Hydroxymethylglutaryl-CoA synthase; (InterPro:IPR010122); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, active site; (InterPro:IPR000590); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase C terminal; (InterPro:IPR013746)|Identical to Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (HMGS) [Arabidopsis Thaliana] (GB:P54873;GB:Q8L721;GB:Q9S707); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32923.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAF69804.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32922.1); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, N-terminal; (InterPro:IPR013528); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase; (InterPro:IPR008260); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, active site; (InterPro:IPR000590); contains InterPro domain Hydroxymethylglutaryl-CoA synthase; (InterPro:IPR010122); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase C terminal; (InterPro:IPR013746) -0.132147946589164 -1.37116117334062 0.197939954200684 1 0.262796674212567 15.1862172886043 -0.132147946589164 0.086055831541075
AT3G05675_at 3.6727119687826 4.41118525545872 4.03805580836628 3.67742719059902 4.23964774842716 4.49672850699992 3.9792244091926 3.65769948303357 3.16651154991033 3.71095912909159 3.6254492812139 3.58966793583713 3.6054311045511 3.60542643560627 3.43499008387272 3.72449668964344 3.85676181317416 3.26687712399911 3.40047334490671 0.215147249249068 0.215525787529187 0.211179838121359 0.207198275229334 0.211425061439511 0.208449809464916 0.207392246206401 0.211688344205937 0.208656364774262 0.214529769002989 0.211997696677949 0.210485089760247 0.210005801606714 0.207932579344238 0.209166360669565 0.215678491066551 0.21365495337017 0.211469812408689 0.211275613858674 3 3 - 1658496 1659004 1658700 1658222 1660374 - gene protein_coding_gene FALSE TRUE AT3G05675.1|AT3G05675.2 protein binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10800.1); similar to Os07g0668800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060582.1); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14275.1); similar to Os06g0129200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056679.1); contains InterPro domain BTB; (InterPro:IPR000210) 0.172707875832786 1.3710725800697 0.197966758677098 1 0.262693067031173 7.52889449625253 0.172707875832786 0.159065817590271
AT3G11150_at 1.47314993086472 1.84839701453682 1.46900996698779 1.43061905092732 1.35902987106488 1.36005245929035 1.26076500817202 1.42090047008387 1.51974673241982 1.43101665395343 1.16355447238831 1.19999499496574 1.2096135632664 1.54698420408235 1.11514281540412 1.18640529901661 1.43241532436014 1.77507417575063 1.50138453393508 0.192674687045337 0.187104057874229 0.189375364225114 0.191844606880809 0.190681920441239 0.191274822994673 0.195250894700621 0.190562483384694 0.189438597287158 0.193702395848053 0.187997669778607 0.190093657576482 0.192584847078700 0.191352635191424 0.189231469473101 0.190288184496159 0.192714635111873 0.195357688779057 0.187842045205740 3 3 - 3493020 3494096 3493659.545 3492873 3494655 - gene protein_coding_gene FALSE TRUE AT3G11150.1 similar to Os01g0830500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044697.1); contains domain no description (G3D.3.50.60.10); contains domain Clavaminate synthase-like (SSF51197); contains domain FE(II)/ ASCORBATE OXIDASE SUPERFAMILY (PTHR10209) -0.125763234730964 -1.37097871294236 0.197995162101078 1 0.262583297204038 2.85908917795284 -0.125763234730964 0.0709162404453929
AT3G61550_at 5.67707179746559 6.89369867192711 5.74656123976585 5.92993380699508 6.9472816317394 7.40633313956607 6.0462175202352 7.86095178615848 8.0951834120492 6.75940938194628 9.17937003527468 8.84905002234227 8.80390533330233 8.62418080828271 7.5969259746325 8.12095909774714 6.91804573328815 8.19551209678942 7.62252103811994 0.256321334528083 0.24466645551935 0.247690214378874 0.246900884526396 0.243498683885151 0.245026419573924 0.259783620741152 0.244769926328675 0.251290458921920 0.250943459405527 0.241870628614928 0.244582433256658 0.24613694602713 0.253783987144296 0.244421994554884 0.248821748634566 0.24897872990144 0.244362428106451 0.24358594694082 3 3 + 22787472 22788019 22787798.182 22787376 22788200 + gene protein_coding_gene FALSE TRUE AT3G61550.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3K (ATL3K) [Arabidopsis Thaliana] (GB:Q9M313); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G46160.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28581.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.340832435452799 1.37094461397532 0.198005481011984 1 0.262543422554419 14.4526886567712 0.340832435452799 0.387649986824742
AT2G31500_at 1.64764112277094 1.32820132309411 1.37032042466832 1.53922128899388 1.26035261995376 1.36054271185576 1.54058816200155 1.20629769104455 2.04092378169442 1.36577042032225 1.54628394158944 1.4813387081073 1.67580435748790 1.33741279744993 1.7287871892077 1.07267462860345 1.65350290679523 1.56235086427814 1.76597004412627 0.177829744041259 0.176010480351088 0.181123093062657 0.17751893779864 0.177877586769451 0.175075958326026 0.180283955516062 0.179391238251419 0.179805959668315 0.173685392589194 0.181095209606609 0.178178676950284 0.190768877622013 0.177779316661334 0.175014596601749 0.177674351370994 0.182887650860366 0.178149549965445 0.175955605168187 2 2|0 +|/ 13422715 13423362 13423103.5 13420841 13423613 + gene protein_coding_gene FALSE TRUE AT2G31500.1 CPK24 (calcium-dependent protein kinase 24); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G57530.1); similar to CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12480.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to calcium-dependent protein kinase 2 [Petunia inflata] (GB:AAZ76711.1); similar to calcium-dependent protein kinase 8 [Nicotiana plumba (GB:CAG27839.1); similar to protein kinase-like protein [Oryza sativa] (GB:AAQ14564.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.132512402275475 -1.37082639556081 0.198041259335698 1 0.262405185534111 3.02239108783330 -0.132512402275475 0.086934344274861
AT3G25500_at 5.33019691138305 5.73767159879857 4.18908291297518 3.90612330949016 5.62666829595458 5.51740879491191 6.82997220007823 6.09009376117586 7.09779757367643 6.14072762526871 8.37176243530644 7.59152544658368 7.49122670208664 7.7312513924694 8.00838725229393 6.54621119410736 6.2375775199472 7.64392825543945 6.57992692464317 0.284185899259979 0.287301086911185 0.292208471845168 0.280793843421673 0.286091958100461 0.31665390081039 0.274215846809214 0.283234280516002 0.309820039769009 0.278820005203294 0.286443190102523 0.274215846809214 0.274215846809214 0.286383968432875 0.28703375009081 0.274215846809214 0.289054310208187 0.274215846809214 0.274215846809214 3 3 - 9252639 9253097 9252977.5 9252330 9256239 - gene protein_coding_gene FALSE TRUE AT3G25500.1 AFH1 (FORMIN HOMOLOGY 1); actin binding Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event. similar to formin homology 2 domain-containing protein / FH2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43800.1); similar to putative FH protein NFH2 [Oryza sativa (japonica cultivar-group)] (GB:BAB86073.1); similar to FH protein NFH2 [Nicotiana tabacum] (GB:AAF24497.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.170289861304739 -1.37074481064792 0.198065953827373 1 0.262309790110261 12.4328444644170 -0.170289861304739 0.155312053668112
AT2G39930_at 8.91286996630784 9.08390080934673 8.98363081074918 8.81035926091324 9.36937800323364 8.83382209213764 9.76045800790576 9.5070252039267 9.4535767679342 9.84865793837936 9.61156629062946 9.51492648062945 9.40357622990704 9.59263872255652 9.5771293113105 9.75495053489414 9.53125539554919 9.88748268909863 9.44046633315417 0.120214811410889 0.109085387915827 0.121173574336380 0.113864814467504 0.107487608556734 0.115419054933764 0.112278667247909 0.109858789575218 0.119765765746151 0.106615891833168 0.106615891833168 0.106615891833168 0.116108888547495 0.107674966517299 0.120935746914999 0.106615891833168 0.117102067963395 0.110547054366082 0.107656785734412 2 2|0 +|/ 16677994 16679202 16678859.444 16673101 16679572 + gene protein_coding_gene FALSE TRUE AT2G39930.1 ATISA1/ISA1 (ISOAMYLASE 1); alpha-amylase/ isoamylase Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to isoamylase isoform 1 [Pisum sativum] (GB:AAZ81835.1); similar to isoamylase isoform 1 [Solanum tuberosum] (GB:AAN15317.1); similar to Alpha amylase, catalytic re (GB:ABE90605.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) -0.144237797390355 -1.37007003592542 0.198270296307064 1 0.261520939252599 18.7527260459706 -0.144237797390355 0.110852676984060
AT2G40935_at 6.59360364315502 6.59321726146892 6.58263256412604 6.67914311884715 7.67841337030132 6.82215265402578 6.66066405537686 6.02660979510896 6.1506472530867 6.01301313529303 5.88122989342352 5.70258418044261 6.0235166121374 6.02457647005591 5.4404942087713 5.64800791794669 5.93463148972975 5.77908904616586 5.52739314525571 0.241339147334944 0.232781238727215 0.232893104155641 0.234011513091031 0.233118754484889 0.240339790242285 0.229087024199353 0.229880994208470 0.237529186968815 0.229331545470138 0.230522886644649 0.230729028061812 0.240911321163607 0.236286413620452 0.235088770584945 0.229087024199353 0.240458450499178 0.252777836869892 0.235977630363644 2 2 + 17090287 17091240 17090829.9 17089926 17091425 + gene protein_coding_gene FALSE TRUE AT2G40935.1|AT2G40935.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18470.1); similar to Os01g0267400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042685.1); similar to putative ORFX [Cryptomeria japonica] (GB:BAE92288.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.189655060418309 1.36992118234253 0.198315397428839 1 0.261346956377935 12.5551965937409 0.189655060418309 0.185137892304681
AT2G20000_at 6.74452988078762 6.47435322083366 6.02597398407754 6.20456406121781 7.01500017137313 6.57176960025256 6.90831705232978 6.99725029405135 5.97679000716769 5.97184510777842 6.31161400465299 6.40228915199438 6.479459340197 6.24368718214031 6.13727913287192 6.07290227247969 5.99884308174508 6.31411909408488 6.6267580446696 0.222842817872911 0.222384445718080 0.221362556321337 0.222905771052127 0.223583476930255 0.227203861067909 0.220710611602582 0.219354104790558 0.216139984386507 0.218371578312464 0.224197586896989 0.214368412147474 0.220782665140604 0.220881523271345 0.227912158902921 0.214734537271038 0.231128141151402 0.222612332345180 0.215330423815669 2 0|2 /|- 8639561 8640049 8639798.4 8639159 8644381 - gene protein_coding_gene FALSE TRUE AT2G20000.1 HBT (HOBBIT); binding Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap. similar to binding [Arabidopsis thaliana] (TAIR:AT3G16320.1); similar to putative HOBBIT [Oryza sativa (japonica cultivar-group)] (GB:BAD35375.1); similar to Os06g0622500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058099.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.136779610060733 -1.36980490707231 0.198350633611971 1 0.261211060606645 12.8361307218118 -0.136779610060733 0.0962364911353634
AT2G19550_at 2.17163518866706 1.92003026998827 2.23845298265362 2.1590861182855 1.88393456466164 2.07472500453549 2.01947202620291 2.13925425894017 2.40081067689022 2.50556823878637 2.26666246419962 2.21180285515330 1.94315359602223 2.1876460703887 1.91995502013668 2.1876990071401 2.03376681861275 2.34261723656202 2.31281344705631 0.198379945763724 0.195783839443804 0.199824290411663 0.190929336586042 0.19361232934901 0.198595290841039 0.196517544093685 0.198318103221862 0.198345725280251 0.192544705572000 0.199461774204360 0.194043058219151 0.191287813271694 0.198347827621474 0.195777959021861 0.194240284097997 0.201269087948354 0.19053387850241 0.19053387850241 2 2 - 8471625 8472170 8471937.727 8471615 8472613 - gene protein_coding_gene FALSE TRUE AT2G19550.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G47590.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.121641419566458 -1.36934661800160 0.198489564931795 1 0.260675515525421 4.34735397062745 -0.121641419566458 0.0600359800785365
AT2G38450_at 6.51409594171352 6.94738331443862 6.81883452460256 6.97249038449226 7.15162278097618 7.16690625442227 7.22647668758721 7.62211392757257 6.67067907361953 6.57073066526139 7.10031999282224 6.98415385002338 7.36952431389453 6.98409529065362 6.8146541809378 6.92014749247099 7.04477239976469 6.7309023964863 6.74281738691682 0.176335692196676 0.167208419414109 0.169258957032964 0.165688952081582 0.167763282207678 0.163187070439920 0.175209253908082 0.169987182171885 0.162025314356501 0.165749473514060 0.162998474750972 0.161530254317836 0.164273799950338 0.166398334009435 0.170129646051975 0.162375440372996 0.182917940208404 0.175493205436529 0.160300952580258 2 2|0 +|/ 16109200 16109582 16109323 16109053 16109994 + gene protein_coding_gene FALSE TRUE AT2G38450.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G05360.1); similar to Sel1-like repeat [Medicago truncatula] (GB:ABE84889.1); similar to Os05g0342900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055251.1); similar to Os03g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049844.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.141054107997228 1.36883375253453 0.198645137521037 1 0.260076338628572 13.8799806177578 0.141054107997228 0.104995914230411
AT2G18380_at 1.57461524186461 2.21904198992318 1.98766995815667 2.05824300343965 1.42398942423065 1.96497126464107 1.76283305934181 1.96752648031543 1.92894865085736 1.64323014686297 2.15435743626095 2.25841458729470 2.19523548484882 2.27313419511156 2.60032470229611 1.48929444825855 2.10271557789122 2.35836879513703 1.8962551822811 0.199123219652470 0.199186218362107 0.200724183298440 0.208101563534283 0.200338118209841 0.198543125880586 0.201840862271754 0.204184943564771 0.206318389532707 0.215445760795004 0.205659375886010 0.203936479142861 0.205777010926057 0.202420232894232 0.208363987609179 0.199434705012668 0.208522923752347 0.207453321077540 0.202222572705626 2 2 - 7989954 7991010 7990455.818 7989950 7991096 - gene protein_coding_gene FALSE TRUE AT2G18380.1 zinc finger (GATA type) family protein Identical to Putative GATA transcription factor 15 [Arabidopsis Thaliana] (GB:Q9ZPX0); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT4G36620.1); similar to GATA-type zinc finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91742.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.166941773237989 1.36873941086882 0.198673766198712 1 0.259966136622231 3.87075729276639 0.166941773237989 0.150351256010598
AT1G54170_at 5.83443138598046 5.95912928078226 5.78262367470331 5.71584340126629 6.32071359146174 6.31273739943806 5.7654812266636 5.77151279742058 5.42977139846209 4.72632828002482 5.18531650841374 5.18665882191075 5.20589788895424 4.73139362080825 4.69260418589173 5.02990910426309 5.60879313706092 4.54663218679834 4.83879193203564 0.216635382450444 0.214359673991509 0.209442021943094 0.214382849393949 0.216092589997052 0.213293413473586 0.215524120936669 0.214125276156315 0.226991288756323 0.214901135086551 0.226538498125818 0.211385496080519 0.209954561574488 0.224490673605312 0.215240213526591 0.210118306071232 0.215785470189493 0.218220289228805 0.216656317809897 1 1|0 -|/ 20225517 20225923 20225721.8 20224727 20229613 - gene protein_coding_gene FALSE TRUE AT1G54170.1 CID3 (CTC-Interacting Domain 3) ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. similar to CID4 (CTC-Interacting Domain 4) [Arabidopsis thaliana] (TAIR:AT3G14010.3); similar to Os02g0480900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046850.1); similar to Ataxin-2, N-terminal [Medicago truncatula] (GB:ABE81532.1); contains InterPro domain Ataxin-2, N-terminal; (InterPro:IPR009604); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920) 0.112722161130371 1.36821719941511 0.198832297432166 1 0.259356226736189 10.9436580373496 0.112722161130371 0.0245403286169537
AT1G03910_at 8.76504983331984 8.9856112986578 8.7112325049975 8.74664075165239 9.46795052032364 8.73747351874461 9.15913174910293 8.92940350842722 8.5273809570026 8.64462216426476 8.45299855274423 8.56958500055169 8.21096965684597 8.30230363460793 8.31915618433262 8.44245125738024 8.21129350721621 8.22365307087368 8.67703282606153 0.1732462527064 0.175239866907130 0.171834820933725 0.176152221224981 0.18161072515904 0.177876756697619 0.174827486688785 0.18230478506193 0.179839093692215 0.166806324303326 0.172124365503868 0.168845482291706 0.175576754413505 0.173721491665557 0.177492282538615 0.173068952534414 0.187221323568879 0.175379478018775 0.171495631827793 1 1|0 +|/ 999655 1000174 999906.111 996117 1000230 + gene protein_coding_gene FALSE TRUE AT1G03910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37540.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958) -0.159384365577315 -1.36817415094213 0.198845370654866 1 0.259305955926936 17.4167600475759 -0.159384365577315 0.138040013548260
AT3G28600_at 1.14838697113801 0.574535064589323 1.07583095572684 0.851829325614466 0.893255330517641 1.08872800921049 1.32658669122313 1.08967474667056 1.37772379513367 0.783778922262278 0.762672781847318 0.717981900648727 0.721788043173331 0.924176836352436 0.99869336037505 0.710077424555996 1.26372568488044 1.07624985825048 1.24803584143656 0.207480390170942 0.207689869573028 0.207743307303645 0.211166404722401 0.207480390170942 0.207480390170942 0.207480390170942 0.216724893034387 0.212726613092333 0.215186250406942 0.221219883751431 0.207480390170942 0.217725032085664 0.215376790086393 0.215117665145831 0.207576144188888 0.217434264609220 0.219902654469626 0.211575844263242 3 3 + 10724532 10725081 10724779.364 10723674 10725232 + gene protein_coding_gene FALSE TRUE AT3G28600.1 ATP binding / ATPase similar to ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT3G28610.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G40000.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78548.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.148488539910795 -1.36796645072643 0.198908456403113 1 0.259063424547486 2.02282018143863 -0.148488539910795 0.119121405519074
AT1G66760_at 2.18501220285229 2.50222515610254 1.92990352164893 2.19040852435531 2.54876556182078 1.51405149861004 3.44660761513645 2.51514886701613 1.47761714907990 1.61015470962418 1.34135199267436 1.73198754952539 1.64475470222369 1.30249286663817 2.34962232740462 1.39609079460127 2.16035726335254 1.65135355904525 1.57048085841149 0.226028789076388 0.227283126834061 0.226517247262733 0.230114061646962 0.222087890543175 0.225790764404005 0.226732399981715 0.229488228295453 0.228183829574773 0.22395184814986 0.222704894673168 0.222087890543175 0.231281090413497 0.228673941484713 0.226783823438649 0.222087890543175 0.226260194421714 0.222087890543175 0.222087890543175 1 1 + 24905986 24906609 24906331 24905641 24908106 + gene protein_coding_gene FALSE TRUE AT1G66760.1|AT1G66760.2 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G66780.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.235982853720057 -1.36794401793886 0.19891527101687 1 0.259037231301323 3.97901651226198 -0.235982853720057 0.251181885052262
AT1G49050_at 9.695432189376 9.76234264613526 10.1677213319614 10.0774242430506 9.63546443278576 9.3222144459248 8.53708767481756 8.53138267443871 9.1270393612408 8.04970421289696 8.04256531135028 7.94638657114276 7.78168305135818 8.22922731363341 7.66734707412603 8.01461795463734 7.90133633394486 8.4046678978116 8.10209161599683 0.173143698674362 0.170659093153354 0.175334583129037 0.170786124335583 0.174483270061707 0.181269342835839 0.171201878403934 0.170269078267620 0.172013580313586 0.170090474154331 0.170212421214432 0.172198414172193 0.175953542986698 0.185170518494185 0.174273479642696 0.166953097453789 0.185494936147301 0.172776298831085 0.175208553371262 1 1|0 +|/ 18155747 18156824 18156388.75 18154206 18157029 + gene protein_coding_gene FALSE TRUE AT1G49050.1|AT1G49050.2 aspartyl protease family protein similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G77480.1); similar to Os06g0268700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057353.1); similar to Os02g0730700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048015.1); similar to Eukaryotic aspartyl protease family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96612.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.120672679513881 1.36759611745827 0.199020980881895 1 0.258631048980622 17.6785123724173 0.120672679513881 0.0576011284623654
AT2G32160_at 11.4155514958644 11.2715097963199 11.7067977354834 11.6661490970501 11.4241512888812 11.2740412323257 11.7420600390433 11.3790349622329 11.9013531514916 11.3455560683574 11.0888484541275 10.6952905449651 11.3596326491911 11.4513991122286 10.9266061731574 11.6734378038857 11.6835969304055 11.4809625863540 11.5922439701067 0.0583574409846202 0.0568954202943271 0.060748722487231 0.0569722264521009 0.0602142217343773 0.0593090647681585 0.0610838775641247 0.060170611450017 0.0675557769939456 0.0594211495297856 0.0575407099427053 0.0580514689438762 0.0596945446189936 0.0609385025539642 0.0590966580533459 0.0568954202943271 0.0617536444984789 0.0596436114397399 0.0589516491047741 2 2 + 13672103 13673149 13672564.273 13669290 13673346 + gene protein_coding_gene FALSE TRUE AT2G32160.1|AT2G32160.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32170.1); similar to Os05g0511300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056014.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF92601.1); contains InterPro domain N2227-like; (InterPro:IPR012901) -0.126166758229602 -1.36753512242963 0.199039519103655 1 0.258559843052693 22.9389233784541 -0.126166758229602 0.0727489694692549
AT3G32910_at 0.659729679302287 0.650682951922086 0.839509506753489 0.536770249161683 0.461185412565583 0.595753007041519 0.549306023471986 0.714767603479151 1.07681994070093 0.443863166306727 0.378551788348355 0.428975896775953 0.670910963149478 0.475253953476532 0.660548615610757 0.589733828378765 0.502112087626499 0.245945262675259 0.592581981083147 0.168301617268695 0.174633184769939 0.169961893781194 0.174659887184398 0.172009788773049 0.169740659294087 0.170833147505644 0.168301617268695 0.176895021975284 0.169174535526123 0.173637994399406 0.177600409880990 0.180513616542804 0.170877809495676 0.183748752569374 0.168301617268695 0.178372275299463 0.174071665515571 0.182999120500385 3 0|3 /|+ 13469143 13469292 13469266.571 13467801 13469328 + gene protein_coding_gene FALSE TRUE AT3G32910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03990.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains domain HIPIP (high potential iron protein) (SSF57652); contains domain no description (G3D.4.10.490.10) -0.122867333594189 -1.36715574734668 0.199154854943182 1 0.258117007160514 1.22517592697996 -0.122867333594189 0.0641047532000017
AT1G54320_at 10.2669642170443 10.3294938559413 10.3054867522188 10.3835655431626 10.2823963072380 10.0054914046202 9.70760950825383 9.82764570376645 9.70845049803216 9.63147105159841 9.95528978064677 9.889157431575 9.74492842547447 9.53274983794388 9.65096544394845 9.79712314557029 9.4337668423337 9.7286152284575 9.72492961746098 0.0863163286709336 0.0840024562178078 0.0890664097505914 0.0847339445968663 0.084655931090312 0.0874975622083624 0.084422743747406 0.0859415945000248 0.0963030263464867 0.086864001495611 0.0862506712562487 0.0853853559122176 0.0840024562178078 0.0899588809782381 0.0886734024097173 0.0844026092415526 0.0960764267047525 0.0906695409056754 0.088824447995059 1 1|0 -|/ 20279420 20280235 20279767.3 20279201 20281624 - gene protein_coding_gene FALSE TRUE AT1G54320.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT3G12740.1); similar to Os06g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058302.1); similar to Os02g0173800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046043.1); similar to hypothetical protein [Lotus japonicus] (GB:BAD32828.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) 0.119798737594162 1.3670969281826 0.199172741862565 1 0.258048356395433 19.8410107812095 0.119798737594162 0.0550224756780608
AT3G55180_at 1.92477554610712 1.42105777923760 1.69555676378440 1.76284014675768 1.15763064407287 1.93678557654825 1.40864065989476 1.99462829217277 1.33763213838580 2.10757971718367 1.17038630337318 1.32587534860659 1.57660339022545 1.53682427366532 1.11283470684297 1.53981019317857 1.39052049288960 1.43307873488323 1.72103867420117 0.17359291887681 0.175154938270624 0.176090976618853 0.179218158519559 0.189812544014192 0.178132179294086 0.189947568043986 0.174835021654905 0.185155761083480 0.173025740950279 0.187721158629128 0.175876306459418 0.180139435097607 0.178555208900232 0.18874747032845 0.18516501467734 0.190844751904520 0.179621102905399 0.181021607563374 3 3|0 +|/ 20466659 20467581 20467254.333 20465880 20467659 + gene protein_coding_gene FALSE TRUE AT3G55180.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G39400.1); similar to Os12g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066522.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.192707058013848 -1.36698936791537 0.199205454427619 1 0.257922822682156 3.21665202126276 -0.192707058013848 0.190259618385588
AT2G21060_at 5.67240618037053 5.94347486134468 5.70975168262734 5.28562638155546 5.22579062167088 5.25763789843734 5.11064270077094 4.86258030183271 5.70584081075078 5.46728793161898 5.74870323373527 5.95119039413673 5.8333487589842 5.67244054166493 5.90244151568619 5.96275069085132 6.23801382390267 5.77546141213592 5.57922303028455 0.191768492986529 0.182332306590081 0.190101840959583 0.183941055350470 0.183624724923486 0.185942458599897 0.186844198581500 0.182332306590081 0.191939368062117 0.193427696781504 0.184118171865246 0.182876175774226 0.192974764994854 0.184867685021329 0.182332306590081 0.182873743430498 0.197971949332080 0.188690344786904 0.189359134374482 2 2 - 9044066 9044565 9044322.636 9043874 9044731 - gene protein_coding_gene FALSE TRUE AT2G21060.1 ATGRP2B (GLYCINE-RICH PROTEIN 2B); nucleic acid binding glycine-rich protein (AtGRP2b) Identical to Glycine-rich protein 2b (AtGRP2b) (GRP2B) [Arabidopsis Thaliana] (GB:Q38896); similar to GRP2 (COLD SHOCK DOMAIN PROTEIN 2), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G38680.1); similar to Glycine-rich protein 2 (GB:P27484); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.136926086914378 1.36625950023870 0.199427549279693 1 0.257071171316013 11.1183193555455 0.136926086914378 0.097266836476609
AT1G11320_at 3.79024333466824 4.19217900234187 4.46911857592601 4.06631463436526 2.95279094110469 3.33936430717289 2.98734733549744 3.05878765967688 3.50207352246995 2.56022944369436 3.22571537494471 3.44424194535941 2.58102099330022 3.43183625601092 3.62272714500859 2.92296975459459 2.99656302567631 3.70448868202363 3.36895838397400 0.241214697892114 0.236381723813704 0.242742639834013 0.248728473806471 0.247396755821855 0.237799259957325 0.235668009633043 0.235707646333069 0.233383332886242 0.235446638158664 0.237426526332124 0.232281793212712 0.249519436276350 0.232281793212712 0.232281793212712 0.232281793212712 0.241566579407531 0.232281793212712 0.232281793212712 1 1 + 3808129 3808701 3808347 3807128 3808875 + gene protein_coding_gene FALSE TRUE AT1G11320.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP53947.1); similar to Os06g0724200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058610.1) 0.148599697665732 1.36610470037156 0.199474680596472 1 0.256890581878089 6.79949281409128 0.148599697665732 0.119689037315068
AT3G11910_at 8.5755759929874 8.85126845532278 8.6948806809463 8.73655763812879 9.13738424783977 8.5795925797948 8.601112424448 8.39437224054509 8.28294657489134 8.25980492814945 8.7103330314156 8.66507093952506 8.19287804702949 8.31498996597335 8.48187358213885 8.48243950000191 8.02333912100115 8.52515414183866 8.40381765766444 0.154900719059889 0.163188301342352 0.160381830515708 0.15666222812035 0.163004438576880 0.175413061415035 0.157498611287338 0.16041815179961 0.173078594702994 0.160812104081556 0.165165777164592 0.164099437004529 0.158430288400381 0.159018850522446 0.164582974566836 0.158731529423790 0.176872317097120 0.164825325426086 0.160309540779137 3 3|0 -|/ 3761782 3763155 3762363.6 3761394 3770411 - gene protein_coding_gene FALSE TRUE AT3G11910.1 ubiquitin-specific protease, putative similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G06600.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94399.1); similar to ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98280.2); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAC83609.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Small acid-soluble spore protein, alpha/beta type; (InterPro:IPR001448); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.145254122949350 1.36536014132483 0.199701503437823 1 0.256022174919524 17.0663594548436 0.145254122949350 0.113692614164625
AT1G51140_at 4.49691885029732 4.89179872814407 6.77402570625908 6.81270205768145 5.63473917408743 5.38738122594522 8.62277691218283 8.64527946210242 3.96054453471123 6.6199050427131 6.07341995534846 5.96880600867223 7.05691460208814 6.63891956604146 5.63726356499709 6.85043338551622 6.92355791548558 6.19712201615354 6.36241549178612 0.200156556652409 0.200156556652409 0.206384775405218 0.203239493845716 0.206332167299161 0.232654299157041 0.217733819831422 0.220483029450454 0.224984636120634 0.200156556652409 0.200156556652409 0.200337853120937 0.205795853267211 0.203520581834178 0.204536474321119 0.202084969613343 0.219642415901131 0.210563615971809 0.203802710234224 1 1 - 18947766 18948405 18948119.636 18947125 18949421 - gene protein_coding_gene FALSE TRUE AT1G51140.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42280.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to transcription factor RAU1 [Oryza sativa] (GB:AAL87667.1); similar to Os09g0487900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063529.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.129350744931326 1.36511604835346 0.199775910844661 1 0.255737550563552 12.4411659228498 0.129350744931326 0.0810070151849113
AT1G68590_at 10.7805734564331 10.7007436374034 10.1826144542014 10.1741999082031 10.5621873914225 10.2664292587587 11.2167299301182 11.1549964403220 11.3481134568446 11.0680592727040 11.6220131656862 11.9137730771271 11.3314002129426 11.3952035176173 12.1465832071583 11.4638806055435 11.0006899072508 11.4997108726411 10.9390213489273 0.0665310861301511 0.0640538421582494 0.0685509338629652 0.067899597607575 0.0671099642198623 0.065504666009825 0.0673381206771032 0.0640538421582494 0.0677842482264837 0.0655576868703417 0.0688938665491871 0.065565973655593 0.0659165346114619 0.0703836479295404 0.0668186739497051 0.0646746230602464 0.0686464141732145 0.0660044744552534 0.0665434314091913 1 1 - 25761257 25761807 25761501.364 25761069 25761895 - gene protein_coding_gene FALSE TRUE AT1G68590.1|AT1G68590.2 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative Identical to Plastid-specific 30S ribosomal protein 3-1, chloroplast precursor (PSRP-3 1) [Arabidopsis Thaliana] (GB:Q9SX22;GB:Q8LD87); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT5G15760.1); similar to Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) (GB:P82412); contains InterPro domain Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65; (InterPro:IPR006924) -0.119322159167756 -1.36495362354515 0.199825435971688 1 0.255548174544819 21.9623367330600 -0.119322159167756 0.0540993074601342
AT2G23580_at 2.4464958262312 2.17304988308193 2.7392137737089 2.19794853489837 1.84769933212302 2.15387216847048 2.04155855332413 2.41648734587304 3.15390271723820 2.88885761163276 2.80848698430184 2.43207831457230 2.76868478891075 2.69990302400318 2.77060736833370 2.7604124572465 2.66489379659263 2.57023205153058 2.84617572997322 0.178494542476885 0.181307271995281 0.183663777979520 0.17819603150041 0.182491576092822 0.190280228919138 0.182881108936535 0.17819603150041 0.17819603150041 0.191838722321161 0.17819603150041 0.18827064018106 0.185939730860967 0.182684947149845 0.181575266590630 0.180543531206747 0.180578615346488 0.185348201705059 0.187376240833394 2 2 - 10040540 10041136 10040863.182 10040123 10041407 - gene protein_coding_gene FALSE TRUE AT2G23580.1 hydrolase, alpha/beta fold family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT2G23550.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.156640393961169 -1.36368012806553 0.200214093774116 1 0.254063901130481 5.0757361944478 -0.156640393961169 0.134276831382768
AT4G23310_at 5.43991900311984 5.68724937363871 4.92696586524205 5.11152440879509 4.72013816819141 4.22551433140231 2.21725646636124 2.38470525327261 4.10048414166872 2.86526245953976 2.45384013544238 2.74951001734783 2.64222370730597 2.56137112803486 2.42518542333866 2.59393665090856 2.47650463496691 2.62433421790903 4.01614539881177 0.294307126169699 0.295411976664198 0.284737831194764 0.286448260934783 0.279673213358721 0.281680756839689 0.290361316015648 0.288205493540968 0.280976117533775 0.279020721352217 0.279144686931073 0.284699077363067 0.279020721352217 0.279020721352217 0.289482710168855 0.279020721352217 0.282653358717323 0.284816492650467 0.280515351666482 4 4 + 12188276 12188719 12188567.818 12185747 12188773 + gene protein_coding_gene FALSE TRUE AT4G23310.1 receptor-like protein kinase, putative similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23270.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.140507128978514 -1.36365610739947 0.200221430686872 1 0.254035913871184 7.452406061793 -0.140507128978514 0.104969601873105
AT3G09370_at 3.90399010812736 4.07311839973629 3.9962070112284 4.08606985533852 3.92771839583398 4.30659461765591 3.94458297396277 3.94988722990017 3.64911602590448 3.70963315731478 3.53619158995331 3.95417356490208 4.12137572807751 3.74748344653025 3.76731764012942 4.06455668550979 4.00673228754288 3.76524107100190 3.82960200644752 0.200121645981728 0.208751809948126 0.211064755194321 0.198128060890917 0.211501395102038 0.201373089742490 0.200856209193734 0.19872401676128 0.207996946854266 0.197589181444089 0.196511839003828 0.198590653798227 0.202703179359623 0.197941251585304 0.208526591516084 0.196511839003828 0.197356432572366 0.199013041622323 0.198854488463142 3 3 + 2881540 2881973 2881709.091 2879372 2882273 + gene protein_coding_gene FALSE TRUE AT3G09370.1|AT3G09370.2 MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor|MYB3R-3 (myb domain protein 3R-3) putative c-myb-like transcription factor (MYB3R3) mRNA, similar to MYB3R-5 (myb domain protein 3R-5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02320.1); similar to MYB transcription factor R3 type [Populus tremula x Populus tremuloides] (GB:CAD98760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.126093198616429 1.36362440594542 0.200231113975535 1 0.253998977991899 7.82343827310367 0.126093198616429 0.0734728712374339
AT3G48770_at 0.999086702377605 1.29419235042792 1.09638296764175 1.54876752403660 1.07510592169643 1.01159010145203 1.09936553411086 1.11763466448314 1.09374155956734 0.796408821084913 1.20314423212614 1.21318025671861 0.860896092602757 0.902720405223192 1.69749469135376 1.22259130859082 1.14320435268556 0.937694616308593 0.908103526752516 0.174834660721832 0.169810321976088 0.172704657035714 0.172237117241367 0.168877677497116 0.170281599027940 0.171069074902795 0.175462489973313 0.175100012104814 0.170357411937230 0.172283939745849 0.172314261925968 0.170471212133765 0.172929491888594 0.174350071382751 0.174575361600303 0.175361400540083 0.175964950871399 0.174270935741072 3 3 - 18090369 18090808 18090607.455 18089459 18097802 - gene protein_coding_gene FALSE TRUE AT3G48770.1 ATP binding / DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28020.1); similar to Os11g0514000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067963.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98229.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93879.1); contains InterPro domain Protein of unknown function DUF1544; (InterPro:IPR011523); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) 0.135128128919873 1.36319484159159 0.200362363971433 1 0.253498543458865 2.19544924423801 0.135128128919873 0.0941689560322576
AT4G03820_at 3.54625050473208 3.52644770941515 4.52028981990508 4.80764306783917 3.68732551993389 2.93531812331922 4.28388884544162 3.25039470552871 2.86116436585139 2.35339027001357 2.52128777265580 2.40966128434887 2.62101155473282 2.88957838464312 2.57984425957188 2.32080542425239 2.54447399913815 3.44332478171107 2.48675606815822 0.223540728439094 0.233760097206113 0.249300503798474 0.230349239739942 0.222355644763053 0.235707185561162 0.230592869780821 0.237670780830339 0.239620207131151 0.226414064506291 0.2260311082725 0.225359058003821 0.228876961417937 0.225902119309821 0.22554710771392 0.222731460510156 0.239196762046809 0.228138889881992 0.228795844869168 4 4|0 -|/ 1772469 1773078 1772779.2 1771861 1774420 - gene protein_coding_gene FALSE TRUE AT4G03820.1|AT4G03820.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22270.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1) 0.217521778046995 1.36313040271877 0.200382058944040 1 0.253423482662535 6.43637078733411 0.217521778046995 0.226733926343527
AT4G31520_at 2.16162980502004 1.76535474554554 2.37208597192737 2.21420880278291 2.06741126139507 2.01472987856527 1.94674941835579 1.74678269377133 2.138863123787 2.0317304700949 2.2388371056466 2.25833929039391 2.49836006992781 2.10710291818559 2.10786348597275 1.84905603116885 2.16323591254511 2.10744926514428 2.33662771458947 0.207253672769529 0.207936451512822 0.209806807644135 0.209406753581315 0.208360489317262 0.208828531463743 0.219510159472724 0.211637341378304 0.214632956028466 0.217109923119214 0.210535531649794 0.209535923113190 0.208340368536587 0.212192356413317 0.209914697286039 0.207382784946918 0.214228407257991 0.221896082618563 0.210972518148958 4 4|0 -|/ 15278311 15279109 15278732.7 15278287 15281745 - gene protein_coding_gene FALSE TRUE AT4G31520.1 SDA1 family protein similar to SDA1 family protein [Arabidopsis thaliana] (TAIR:AT1G13160.1); similar to H0323C08.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86217.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Region of unknown function, nucleolar NUC130/133, N-terminal; (InterPro:IPR012977); contains InterPro domain SDA1; (InterPro:IPR007949) 0.129593276688568 1.36300167143741 0.200421408955643 1 0.253273538942697 4.2037962118522 0.129593276688568 0.0820361508356601
AT3G03230_at 1.37795491017073 1.68697736775314 1.57228853133918 1.25412636447577 1.12843854123425 1.33784268261190 1.32884843486611 1.45895224799005 1.38790278259753 1.50883494943454 1.65109843494965 1.19936869202950 1.41104992209174 1.50346498252508 1.39819897497008 1.00430646400767 1.56717053151597 1.55186026281276 1.70833772035405 0.199962068330609 0.20388754735556 0.204740433779610 0.206614741858283 0.201519660195742 0.210649272516371 0.201748728665764 0.202979956124677 0.211536933679974 0.202016846619976 0.208453874023395 0.199962068330609 0.21593709029503 0.208876062275968 0.201460667886144 0.202012128602029 0.201473740433890 0.211073237729522 0.205329670511008 3 3 - 744551 745446 744978.636 744396 746016 - gene protein_coding_gene FALSE TRUE AT3G03230.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G03240.1); similar to Os12g0152100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066173.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95828.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.132109788981150 -1.36254068741358 0.200562373350107 1 0.252736673065203 2.86609860200923 -0.132109788981150 0.087815504304825
AT3G29230_at 6.72355579272422 6.67408350513014 6.47159249379332 6.24316055413251 7.00788392107444 6.45016995304955 7.64473806829848 7.58543572809657 6.7131937979543 6.88604982372541 6.80061679718968 7.35362013292456 6.73526687016707 7.19461988206655 7.7084549145706 7.1940730250047 6.70536733156085 7.15244034339893 6.71893773634376 0.158261871661940 0.162797383870612 0.166247547663935 0.157148348649639 0.162054529836028 0.160359028362829 0.162647564917376 0.163322769029775 0.164766983483940 0.16891519108404 0.160664739478548 0.155047045495715 0.155047045495715 0.159859697646797 0.163058620837682 0.155157826862870 0.158768480781595 0.160129911568977 0.164339138250217 3 3 + 11191271 11191813 11191552 11190040 11191842 + gene protein_coding_gene FALSE TRUE AT3G29230.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99065.2); similar to Os12g0578000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067118.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.140460625140343 -1.36231205202464 0.200632318455719 1 0.252470448452954 13.7892197677632 -0.140460625140343 0.105149798944961
AT4G18180_at 0.852165778563747 1.25579379332763 1.11591872778656 1.25336383978165 0.810580180066718 0.785945877943262 1.04587570275911 1.15620310393470 0.870170452592644 1.35033631601129 1.0720861825558 1.24081466183793 1.13445768111958 0.625408460326774 0.709313975714026 1.02794466205793 1.30083480255610 0.740658623818531 1.22840877882590 0.202902042961796 0.198389557103659 0.199182350306261 0.202985666069477 0.197018615845654 0.198236157885519 0.203097749646491 0.201494086608147 0.199073596360189 0.205305386418101 0.202206818169668 0.198455883832391 0.197501590219510 0.203789652404520 0.198967530797948 0.206361197263348 0.200114571512514 0.201085520751018 0.197018615845654 4 4|0 +|/ 10066561 10067293 10066985.5 10065637 10067328 + gene protein_coding_gene FALSE TRUE AT4G18180.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase [Arabidopsis thaliana] (TAIR:AT3G14040.1); similar to Exopolygalacturonase precursor (Pollen allergen Pla a 2) (GB:Q6H9K0); similar to Os08g0327200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061556.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.127128036406681 -1.36230490546973 0.200634505087600 1 0.252462127448120 2.10002007404956 -0.127128036406681 0.0763376502740542
AT1G21780_at 7.80902099362535 7.5210436263748 8.37632781495478 7.98510010039622 8.84933281002446 7.79895094275563 8.42739515245676 7.79311418257335 7.2486745489346 7.21109895843172 6.86760117288023 6.90532291556244 7.8101585823035 7.05755344331233 6.92780987934539 7.76366724355057 7.81763993708239 7.46099536337628 7.30245885052142 0.200174403401970 0.20149919812779 0.201236699198454 0.198151417023461 0.209566992718977 0.207123134428375 0.210216780002191 0.204447391074458 0.203704887890925 0.194671523180527 0.197065316368775 0.198082824457275 0.195728431396469 0.201692026219269 0.198557995279148 0.19271856727377 0.21263453115194 0.201497229106993 0.198037259933447 1 1 + 7653264 7653770 7653436.545 7651871 7654003 + gene protein_coding_gene FALSE TRUE AT1G21780.1|AT1G21780.2 BTB/POZ domain-containing protein BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B. similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55760.1); similar to BTB/POZ; TRAF-like [Medicago truncatula] (GB:ABE79798.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.218525271411301 1.36207333642956 0.200705369029587 1 0.252192518998341 15.3602462127981 0.218525271411301 0.228380004746422
AT1G80580_at 2.36544772215891 2.3207714077184 2.20511278170587 2.06068879991720 1.64985378943819 2.20135024637373 2.17234684009339 2.05023861067886 3.10402361759593 2.69633567029855 2.56106477626522 2.47972804061553 2.49094555788558 2.62546925168380 2.79439538995471 2.74634810901313 2.38881202607522 3.07469209831758 2.37193606613173 0.209987833948091 0.213974911880401 0.211212928764554 0.216072979241506 0.21156518271096 0.215150581238767 0.209987833948091 0.217942712541527 0.209987833948091 0.214030193532939 0.213495194696874 0.214460470153747 0.210467758269224 0.216140139919322 0.212827451847169 0.209987833948091 0.219065198676005 0.212842572705822 0.215923713807822 1 1 + 30298638 30299077 30298821 30298450 30299220 + gene protein_coding_gene FALSE TRUE AT1G80580.1 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element-binding factor 4 homolog) (EREBP-3) (NsERF3) (GB:Q9LW49); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.138433142959684 -1.36202319835769 0.200720714851962 1 0.252134148970129 4.81286645354478 -0.138433142959684 0.101190823046696
AT3G03360_at 3.78201426244630 3.46785429467831 3.63380465491024 3.70079387607716 4.10020322447389 3.78797776528285 3.94166233841844 3.94109107696055 3.40999129816899 4.29369919258576 4.07151175322404 3.75163255494489 3.48706274701639 4.03044068254355 3.44798130980175 4.34283719847881 3.95194252653403 3.57261572678539 4.62543723043099 0.209557518877878 0.210423251858981 0.212862652528073 0.20924189109429 0.208648148805274 0.211851458456066 0.210314899081269 0.217760379218486 0.225596570869990 0.207970267691260 0.213898562894175 0.212071256971469 0.208547419517099 0.209029734702945 0.211674879694306 0.21081264152761 0.229738060286018 0.206304623552058 0.212263525198310 3 3|0 +|/ 796147 796877 796649.9 795225 796925 + gene protein_coding_gene FALSE TRUE AT3G03360.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G02910.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE94588.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.127583395459502 -1.36195738481214 0.200740859970065 1 0.252057532010725 7.76528133806164 -0.127583395459502 0.077521749389071
AT1G67080_at 9.0465171779323 9.34721857793806 9.53446418493429 9.49756863798196 9.91325591871517 9.36688380431433 9.98501021504269 9.53310645622989 9.1528723996499 9.27488067610477 9.58474605547662 9.47687201341058 9.46031630442357 9.28563255549458 9.16829319983676 9.63218159404158 9.58138907185855 9.8271196248686 9.44312908232414 0.105306977043953 0.104571165220086 0.115134063191317 0.112042555201358 0.108053042607715 0.111128302491840 0.107995675583886 0.106713032707696 0.127222897867538 0.107928563075916 0.105558916890537 0.105435554886192 0.108976518675144 0.113444315396523 0.110145016515909 0.106733351065142 0.124267441682119 0.104338122323289 0.106297599977874 1 1 - 25049097 25049973 25049510 25048888 25050523 - gene protein_coding_gene FALSE TRUE AT1G67080.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52477.1) 0.155927389717064 1.36175870467158 0.200801684947944 1 0.251826253531017 18.9241845491957 0.155927389717064 0.133434248025409
AT1G75720_at 2.70236177434781 2.46708831346747 2.68200814934055 2.67985251028665 2.26000221527416 3.00816111864335 2.87493450297014 2.70686650512819 3.43696144157029 3.27871095001253 2.74239933235951 3.05329751576519 3.14853993541616 3.09646550645469 2.98089604590205 3.04304969295448 3.09918257054983 3.02402620339959 3.21839641222756 0.194370547765094 0.194193235070571 0.194656964450756 0.191481830686703 0.202595062815002 0.189901553363130 0.187965321135579 0.198160521470159 0.192268394816276 0.193663163841319 0.189213223218968 0.199810019231681 0.191063349080655 0.195036790197812 0.191813876023266 0.196365203320182 0.205930193437066 0.196020107157083 0.190899416041706 1 1 - 28438408 28438938 28438683.818 28438309 28438979 - gene protein_coding_gene FALSE TRUE AT1G75720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51220.1); similar to F10A5.8 [Medicago truncatula] (GB:ABE81388.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) -0.159090471589415 -1.36174960892306 0.200804469935531 1 0.251815665955148 5.84007857032578 -0.159090471589415 0.138805250962423
AT2G21195_at 4.97082300927993 5.63099552533637 4.93638181327017 4.93156453703963 4.80134768730096 5.41618013534451 6.1468139593838 6.59060951492484 6.28503252529519 5.72038977427226 6.78948188980655 6.4487094270141 6.24706268001228 6.85509970677334 6.70664058617933 6.74194906606128 6.06450560394002 6.00510431527293 6.08800470570414 0.224052683340842 0.212241898950164 0.214190227316422 0.218486297150559 0.213270557045345 0.216979492328365 0.211289278010527 0.214093068947488 0.218419807418123 0.217176487191647 0.213049545583413 0.208405351952345 0.209859966412784 0.212837442272546 0.212591676175342 0.208405351952345 0.233017974727734 0.216360256540702 0.226861189708674 2 2|0 +|/ 9090303 9090708 9090498.75 9090246 9090990 + gene protein_coding_gene FALSE TRUE AT2G21195.1|AT2G21195.2|AT2G21195.3 |unknown protein similar to Os07g0265100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059333.1)| -0.181132567350232 -1.36169174806031 0.200822186854367 1 0.25174831625152 11.6848202699715 -0.181132567350232 0.173988748596095
AT2G02140_at 1.61195459134780 1.85610044130509 2.29184388552503 2.20810073608637 1.61088721465454 2.24677207776278 1.94992300472842 1.71658490448134 2.00600666613566 1.92338870745624 1.68991734475784 1.87261299713107 1.74179988401726 1.88338526661060 2.09142403211764 2.10224619562368 2.06356236435903 1.89672958113492 1.83309826618813 0.196015000483216 0.194250226266833 0.205848665110006 0.204683440581551 0.196915684299695 0.199047703676162 0.201736403967436 0.201641254340507 0.196243646083782 0.200115466017304 0.207225273353078 0.205561391687849 0.199216074864069 0.195582234909844 0.194250226266833 0.198251595748792 0.212590529725534 0.200746821080719 0.200457177056181 2 0|2 /|+ 545015 545130 545083.4 544706 545428 + gene protein_coding_gene FALSE TRUE AT2G02140.1 LCR72/PDF2.6 (Low-molecular-weight cysteine-rich 72); protease inhibitor Identical to Low-molecular-weight cysteine-rich protein LCR72 precursor (LCR72) [Arabidopsis Thaliana] (GB:Q9ZUL8); similar to LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02130.1); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-rich 69), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02100.1); similar to protease inhibitor II (GB:AAA91049.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Gamma Purothionin; (InterPro:IPR008177); contains InterPro domain Knottin; (InterPro:IPR003614) 0.151319369000258 1.36161024937965 0.200847143850501 1 0.251653455589394 3.85579131772593 0.151319369000258 0.125439725542802
AT4G09610_at 1.09655798299108 1.10165926021445 1.51447042733441 1.22135994760620 1.29974439053546 1.37481052453578 1.341254703884 1.07806492137178 1.03598574658309 1.30498914500541 1.29518286889882 1.19458953437817 0.913360881664724 1.16076835793884 0.830676629212805 1.01786326029031 1.78007651479956 1.36490354113691 1.09201672482577 0.197298106610923 0.193953909785635 0.206085273044440 0.204281091980244 0.194735602456064 0.193953909785635 0.195388681233879 0.198062757606912 0.207180884582109 0.199784589307824 0.199007538803523 0.196576542338843 0.198444282183852 0.198049950459864 0.202190360494491 0.199290306305692 0.193953909785635 0.195234315045890 0.197697350392053 4 4|0 -|/ 6074982 6075538 6075172.125 6074767 6075642 - gene protein_coding_gene FALSE TRUE AT4G09610.1 GASA2 (GAST1 PROTEIN HOMOLOG 2) Identical to Gibberellin-regulated protein 2 precursor (GASA2) [Arabidopsis Thaliana] (GB:P46688); similar to GASA3 (GAST1 PROTEIN HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT4G09600.1); similar to snakin2 [Solanum tuberosum] (GB:CAC44012.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.124279632561448 1.36112868164877 0.200994665046638 1 0.251093012550394 2.42299438848153 0.124279632561448 0.0694041036580278
AT2G22370_at 5.34967081068862 5.66818911917257 5.9028985593506 5.50208533917468 5.91033621244792 5.34443575658131 6.17856005935226 5.58171259552536 5.31940103070611 5.23396594764213 5.02497856159672 5.02502863954229 5.28783715597076 4.97185397156337 5.10876581091224 4.89990548712991 4.83457842288179 4.772648130914 5.39108578153797 0.223340585144178 0.227529486060551 0.221959243843300 0.223989669710995 0.225688849016877 0.225166495847523 0.2283223860584 0.23979749179901 0.242166312434802 0.222239952418956 0.227240530305838 0.222921757291711 0.225986047878959 0.244142821989624 0.227440235800211 0.225415710765838 0.23743490580616 0.227287109286634 0.223585747176056 2 2|0 -|/ 9508118 9508915 9508422.375 9507895 9509269 - gene protein_coding_gene FALSE TRUE AT2G22370.1 similar to Os02g0193900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046173.1); similar to mediator of RNA polymerase II transcription, subunit 18 homolog [Xenopus tropicalis] (GB:NP_001017086.1); contains domain Thiamin pyrophosphokinase, catalytic domain (SSF63999) -0.176856121680462 -1.36047249075598 0.201195824759136 1 0.250329563570375 10.8324946111330 -0.176856121680462 0.167655530794822
AT1G04340_at 6.28516813788267 6.73787600443991 6.54406203732699 6.91983321807986 6.67229970377664 6.84345757087563 6.5496775048041 6.91855322908736 6.48286983269203 5.29949333602795 6.07788410120454 5.79088645792972 6.19893317959361 6.0483497415643 6.22131650346425 5.93559376950761 6.11427004265685 5.71231828822657 5.71975376427399 0.196517694720937 0.192867007570451 0.196103691728965 0.193951362992778 0.199841915898806 0.197759495525700 0.192973852864062 0.198469463699412 0.207257762499033 0.197728339264151 0.188978287877602 0.190929592691703 0.193208907218042 0.200677691343437 0.199145854452792 0.201277756993855 0.200835917903319 0.200656148984726 0.199378198331932 1 1|0 -|/ 1163349 1164046 1163772.1 1163096 1164850 - gene protein_coding_gene FALSE TRUE AT1G04340.1 lesion inducing protein-related similar to lesion inducing protein-related [Arabidopsis thaliana] (TAIR:AT5G43460.1); similar to putative lesion-inducing protein [Capsicum annuum] (GB:AAR83861.1); contains InterPro domain Surfeit locus 4-related; (InterPro:IPR011592); contains InterPro domain HR-like lesion-inducer; (InterPro:IPR008637) 0.150249723157522 1.36044197540821 0.201205183522157 1 0.250294066452538 12.6071074198757 0.150249723157522 0.123768897377308
AT1G28540_at 6.89923129144879 6.71700030711293 6.6088545398241 6.78366652689848 7.63108104616659 6.23166857865596 6.39981191531809 6.42152828199174 6.00892978825939 5.57021805823458 6.11464782987194 5.85344715782418 6.10346452358632 6.39436678236651 5.65297124157474 6.1567317029694 5.97307530869382 5.66334061712668 5.61519660164667 0.218839105461758 0.21809511745131 0.221781625776577 0.216803467316875 0.213214786650742 0.235902520819220 0.215523072645584 0.216802133403277 0.225476817099831 0.224679171662399 0.218221866620448 0.215703975693511 0.213492348975596 0.215422381923902 0.219994383495227 0.215684779048516 0.228502403955539 0.217078696364650 0.216056785454293 1 1 + 10035684 10035949 10035821.909 10035650 10036942 + gene protein_coding_gene FALSE TRUE AT1G28540.1 similar to Os06g0525000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057762.1); similar to Os06g0524500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057759.1) 0.230991110019943 1.36034705561491 0.201234296825781 1 0.250183654055402 12.5718322083680 0.230991110019943 0.24611477621155
AT3G60220_at 2.1681035932108 3.04928606853606 2.01833179821117 2.25229965987190 3.04784933918518 2.78794910901233 3.00514946637542 3.3539937310011 3.04447719561721 2.84526207489848 3.07900856050726 3.4093204897822 3.49984696955841 3.28825590071714 2.23291289424386 3.26437503239338 3.30786942386951 2.85443378396289 3.44741508690188 0.239667980622019 0.239309317423257 0.256694869520163 0.250229370298532 0.245934897641206 0.24994592696218 0.243958298843894 0.246765739492388 0.246522998285369 0.239215020410763 0.239215020410763 0.239215020410763 0.247582085219505 0.246080529328930 0.243538581783482 0.239215020410763 0.251702736025348 0.249213330956678 0.24233252748666 3 3 - 22265775 22266315 22266063 22265573 22267061 - gene protein_coding_gene FALSE TRUE AT3G60220.1 ATL4 (Arabidopsis T?xicos en Levadura 4); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4). Identical to RING-H2 finger protein ATL3J (RING-H2 finger protein ATL4) (RING-H2 finger protein RHX1a) (ATL3J) [Arabidopsis Thaliana] (GB:Q9LY41;GB:Q9SPV6;GB:Q9ZT40); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G23980.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G18930.2); similar to RING-H2 protein [Medicago sativa] (GB:AAN32654.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.181453821068613 -1.36003446999602 0.201330196257001 1 0.24982008619128 5.82506417951809 -0.181453821068613 0.174816388838737
AT1G74820_at 1.18653381890342 1.24161008177882 1.35438652180468 1.6076316929163 1.24600570999895 1.64811263789758 1.39050271757408 1.30346190962908 1.26874214196634 1.09910795432228 1.39871750497557 1.38266523926188 1.78644228673203 1.08970398603988 1.75414948011682 1.37590566031556 1.37315295760247 0.972533968805382 1.57637060206202 0.208692748908612 0.204767551774850 0.207908873252930 0.206596884993319 0.202865243251333 0.201198817907752 0.201198817907752 0.206818173264083 0.209870582370325 0.205576662245589 0.206888714872836 0.207001386955132 0.203227295980742 0.20475152472245 0.204096335073002 0.204468671674812 0.2149761657373 0.210321593686704 0.201198817907752 1 1 - 28115630 28116043 28115830.455 28115543 28116226 - gene protein_coding_gene FALSE TRUE AT1G74820.1 cupin family protein Identical to Putative germin-like protein subfamily T member 3 precursor [Arabidopsis Thaliana] (GB:Q9S772); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G18980.1); similar to germin-like protein [Ananas comosus] (GB:AAM28275.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.130212830690340 1.35985481600875 0.201385330265503 1 0.24961115681119 2.72548019544524 0.130212830690340 0.0841466794139887
AT3G17900_at 6.54694607241013 6.53978988349187 6.12833763287907 6.34769324019297 6.48215616431019 6.37213107967799 6.0634597472832 6.29350713126279 5.50217407894072 5.49074602174259 6.14641863139578 6.06089625528851 5.67265759878269 5.99941341816299 5.89479199343693 6.01569346124472 5.60184468703796 6.00491557866776 5.9746426219538 0.213932829614703 0.207980856625224 0.218870167156091 0.204641324045528 0.211029354280604 0.228096897366497 0.209676619741038 0.214160606103636 0.240140131191868 0.212606891609869 0.219250529587213 0.213353838237472 0.215180583974454 0.223869407990558 0.213674707726562 0.208963611031615 0.229126856598318 0.219705680636978 0.205261315827253 3 3|0 +|/ 6131849 6133045 6132499.7 6128512 6133389 + gene protein_coding_gene FALSE TRUE AT3G17900.1 similar to Os03g0152800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048995.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94028.1) 0.120189266388095 1.35980571009754 0.201400402565422 1 0.249554052170611 12.1369692158791 0.120189266388095 0.0582234210122207
AT3G50960_at 1.79305760884481 2.11155251770554 1.89916640424125 2.19288630764637 2.01360314707051 1.77176515233759 2.1883331083391 2.70963977840581 1.79075906161460 2.30191690336709 2.90724792405285 3.10184983620347 2.77348958546954 2.99305848845976 2.88400073021401 2.47616821357347 2.33444416640614 2.54007957754036 2.56402252066796 0.191161817904248 0.19050174867754 0.202096508914972 0.189661754001348 0.18643317947161 0.192440694203527 0.188699028771715 0.193801156603449 0.205398483303611 0.190376654430695 0.200014303409245 0.198906840050289 0.196858189137667 0.189202707464343 0.192042035165147 0.192009289286308 0.189413609542879 0.196399436197283 0.187708175291427 3 3|0 -|/ 18949900 18950615 18950252.889 18949678 18951409 - gene protein_coding_gene FALSE TRUE AT3G50960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66410.1); similar to Os05g0255600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055035.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE84079.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.15055115976176 1.35922433730191 0.201578917355010 1 0.248878088532702 4.57009640830212 0.15055115976176 0.124546065969945
AT3G51620_at 7.32766468877192 7.69947675420799 7.46700908201642 7.80200775032584 7.85095771532643 7.57195751441707 7.04063844714366 6.9990681970327 7.31274346920047 7.23277438020587 7.0050915623625 7.10571089604213 7.35987150791603 6.92455660166031 6.55476519314865 7.59563209902281 7.64851330187088 6.66622828805379 7.17263079273312 0.205368195985271 0.203032989554631 0.221306912596156 0.205289319666944 0.213571096702703 0.208229357346716 0.207264513574382 0.207716379372130 0.206980860640725 0.203032989554631 0.207500661594556 0.203032989554631 0.207782796172434 0.211805307351752 0.219673423519263 0.203032989554631 0.211192838163063 0.206295743478010 0.211573991426284 3 3|0 +|/ 19158140 19158705 19158429.222 19154631 19159221 + gene protein_coding_gene FALSE TRUE AT3G51620.1|AT3G51620.2 similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G56320.1); similar to Os11g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065579.1); similar to nucleotidyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91191.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201)|similar to nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT3G61690.1); similar to Os11g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065579.1); similar to nucleotidyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91191.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201) 0.137217147139429 1.35868426955159 0.201744867141879 1 0.248250327900287 14.6433120496416 0.137217147139429 0.0994179866684084
AT1G53020_at 2.64701620521466 2.40082274280968 2.71737131859089 3.24758965795972 2.43172407011684 3.01229830899506 2.35991012008286 2.70229030506194 3.03674054173973 2.91192797762672 3.05801900153798 2.45271393791436 2.67013724482079 3.12422732631596 2.8853679694813 3.23239064897456 2.97263615575608 3.24428666848797 2.88128729094242 0.209271789878260 0.210069667959708 0.211370920584780 0.209334212099013 0.214018137588992 0.216024391166461 0.212161179527382 0.209323610081421 0.2091111527181 0.210870596988892 0.207809992561524 0.217877260743560 0.20949415889057 0.212179869353184 0.206252438272746 0.206252438272746 0.210967391652488 0.212637343164929 0.21168040063405 1 1|0 -|/ 19755099 19755884 19755508.625 19755040 19763142 - gene protein_coding_gene FALSE TRUE AT1G53020.1 UBC26 (ubiquitin-conjugating enzyme 25); ubiquitin-protein ligase similar to UBC25 (ubiquitin-conjugating enzyme 23), small conjugating protein ligase [Arabidopsis thaliana] (TAIR:AT3G15355.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE86204.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.16819488067409 1.35845608844316 0.201815015859701 1 0.247985147546957 5.63902332740266 0.16819488067409 0.154400583928178
AT2G17370_at 3.35047200968685 3.84890193736157 3.3987477476833 3.44465861147166 3.30717208342119 3.43638931938394 3.41284744351361 4.29881029451505 4.23190495487689 3.6771399922714 3.81693211675883 4.06378593030619 4.16284551042055 3.68278731652901 3.87867550543591 3.8858508569422 3.54218789544119 3.89468774348013 3.7938299567361 0.193255694594128 0.184752357225041 0.18346551114625 0.182825086901001 0.185687883819795 0.191988860865108 0.183476509852070 0.177913959316998 0.177792782603723 0.185896089786249 0.178307249845849 0.176674037713304 0.179475164038330 0.185061928243598 0.179591127375292 0.183829849179423 0.176970024848713 0.182914674985476 0.176674037713304 2 2 + 7558370 7559038 7558684.182 7556857 7559283 + gene protein_coding_gene FALSE TRUE AT2G17370.1 HMG2 (3-hydroxy-3-methylglutaryl-CoA reductase 2) 3-hydroxy-3-methylglutaryl-CoA reductase Identical to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC 1.1.1.34) (HMG- CoA reductase 2) (HMGR2) (HMG2) [Arabidopsis Thaliana] (GB:P43256); similar to HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) [Arabidopsis thaliana] (TAIR:AT1G76490.1); similar to 3-hydroxy-3-methylglutaryl-CoA reductase [Euphorbia pekinensis] (GB:ABK56831.1); similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase [Malus x domestica] (GB:AAL03986.1); similar to 3-hydroxy-3-methylglutaryl coenzyme A reductase; HMG-CoA reductase; EuHMGR [Eucommia ulmoides] (GB:AAV54051.1); contains InterPro domain 3-hydroxy-3-methylglutaryl Coenzyme A reductase; (InterPro:IPR004554); contains InterPro domain Hydroxymethylglutaryl-coenzyme A reductase; (InterPro:IPR002202); contains InterPro domain Hydroxymethylglutaryl-CoA reductase, NAD-binding; (InterPro:IPR009023); contains InterPro domain Hydroxymethylglutaryl-CoA reductase, substrate-binding; (InterPro:IPR009029) -0.183002586329894 -1.35838996076194 0.201835348997166 1 0.247908303063388 7.44571363623417 -0.183002586329894 0.177511192999941
AT3G15170_at 1.50855828101156 1.35650693141848 1.47941559320048 1.11494596183857 1.21785139924219 1.3575536224 1.1332932901372 1.40982847949253 1.34788857972131 1.5298344163233 1.09441559768274 1.17483488310965 1.17216535451645 0.844908225123252 1.54942517580983 1.56561061640102 1.76093841248117 1.13888706087696 1.59406684408445 0.211138115928241 0.215949757388958 0.213024198870711 0.212852260381745 0.211138115928241 0.211138115928241 0.214407653945575 0.211138115928241 0.220899716182257 0.218501230934994 0.216608795177597 0.211880252265199 0.216538590131040 0.211138115928241 0.213331596277109 0.213981167918302 0.21763275463007 0.211138115928241 0.218964493407724 3 3|0 +|/ 5110866 5111415 5111152.5 5109890 5111454 + gene protein_coding_gene FALSE TRUE AT3G15170.1 CUC1 (CUP-SHAPED COTYLEDON1); transcription factor Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed. similar to CUC2 (CUP-SHAPED COTYLEDON 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G53950.1); similar to NAM [Petunia x hybrida] (GB:CAA63101.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.131276774485424 -1.35837312995028 0.201840524457780 1 0.247888745021662 2.71136658440587 -0.131276774485424 0.0868634688519204
AT4G05450_at 3.96489968973642 4.30541348873706 4.14211933726121 3.90739496665440 4.22710307583927 4.14730843605919 5.27231106325677 5.19605631428706 4.02007307949838 4.10472799201921 4.28187140054462 4.6350692845986 4.00083341098579 4.50535209524381 4.07739663985836 4.51481460095758 4.5121130891344 4.25064326871208 3.93597496737069 0.231514987004012 0.223985106206749 0.23313852172016 0.244493612500887 0.228903634292037 0.235399864981066 0.238237565263427 0.224824161337902 0.228221342514124 0.226602947813978 0.229936972180460 0.225420074025803 0.235739975162959 0.227895473450003 0.227351160434286 0.232551349076111 0.227628988435684 0.228218264151715 0.223644026343975 4 4|0 +|/ 2759329 2760567 2760072.857 2758650 2760909 + gene protein_coding_gene FALSE TRUE AT4G05450.1 adrenodoxin-like ferredoxin 2 similar to electron carrier [Arabidopsis thaliana] (TAIR:AT4G21090.3); similar to Adrenodoxin [Medicago truncatula] (GB:ABE77794.1); contains InterPro domain Adrenodoxin; (InterPro:IPR001055); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.125842820462916 -1.35832025332391 0.201856784695177 1 0.24782730145679 8.57908599817084 -0.125842820462916 0.0740761188351321
AT1G61630_at 1.44761031335371 1.18198813285371 1.47959922167223 1.12142134863734 0.991733895566655 1.24933978231317 1.03179269047657 0.872796753110267 1.03704868183789 0.912088642619426 1.05728114268954 0.790938319357062 0.580958565066921 1.29828432855029 1.33498513760026 1.46995745638809 1.25249477621705 1.37581945376763 0.912038641986154 0.203497002673723 0.203234566241467 0.208712470039764 0.214455672446116 0.202550868199304 0.204943560642087 0.202550868199304 0.206617104907365 0.209502722867373 0.220977905786244 0.210463316723311 0.205898552294335 0.209001873491725 0.214597948146747 0.207424657930504 0.204856748332056 0.211423463848848 0.215387896334667 0.207215139809599 1 1|0 +|/ 22749012 22749745 22749406.7 22747872 22749776 + gene protein_coding_gene FALSE TRUE AT1G61630.1 equilibrative nucleoside transporter, putative (ENT7) similar to FUR1 (FUDR RESISTANT 1), nucleoside transporter [Arabidopsis thaliana] (TAIR:AT4G05120.1); similar to Os07g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059966.1); similar to Os07g0557100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059965.1); similar to equilibrative nucleoside transporter(ENT3)-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30919.1); contains InterPro domain Delayed-early response protein/equilibrative nucleoside transporter; (InterPro:IPR002259) 0.134170582452784 1.35781668190512 0.202011693977075 1 0.247242224863033 2.22144287704917 0.134170582452784 0.0932710107256407
AT3G46740_at 7.65753131844641 7.78690931619078 7.3070603363239 7.27926091006698 6.57693946733986 7.28582719666403 7.26655839548776 7.76099334722792 5.96789939635609 7.2693855948509 7.35781389879796 8.21069121193527 7.28045747444222 7.454919926725 8.52848339384036 7.51230946646415 7.47118853123046 6.638850651242 6.91902245972996 0.164743162320599 0.165704253359278 0.167101440488126 0.163484651546199 0.161704876392714 0.167897404616147 0.167522107859462 0.161341267840934 0.202114778582823 0.165623651274634 0.164615153035578 0.166005242444683 0.160434667078470 0.169497948886017 0.165784089332492 0.161055189094599 0.180193243409648 0.175482739167068 0.175199733118465 3 3|0 -|/ 17227099 17227834 17227449 17226798 17230328 - gene protein_coding_gene FALSE TRUE AT3G46740.1 TOC75-III (translocon outer membrane complex 75-III); protein translocase Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts. Identical to Protein TOC75-3, chloroplast precursor (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) (TOC75-3) [Arabidopsis Thaliana] (GB:Q9STE8); similar to ATTOC75-IV/TOC75-IV (TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV) [Arabidopsis thaliana] (TAIR:AT4G09080.1); similar to Protein TOC75, chloroplast precursor (75 kDa translocon at the outer-envelope-membrane of chloroplasts) (Import intermediate associated protein of 75 kDa) (75 kDa chloroplast outer envelope protein) (GB:Q43715); similar to chloroplast import-associated channel protein homolog [Oryza sativa (japonica cultivar-group)] (GB:AAP06869.1); similar to Bacterial surface antigen (D15) [Medicago truncatula] (GB:ABD33137.1); contains InterPro domain Bacterial surface antigen (D15); (InterPro:IPR000184); contains InterPro domain Chloroplast envelope protein translocase, IAP75; (InterPro:IPR005689); contains InterPro domain Surface antigen variable number; (InterPro:IPR010827) 0.166172026141418 1.35757830866259 0.202085057154241 1 0.246965321793646 14.5029392707920 0.166172026141418 0.151311462201505
AT3G09360_at 3.27320628621919 3.27361202359084 3.38315418043963 2.91312145095686 3.32397963335255 2.65879044202451 3.79435360529888 3.27024167329896 3.54098195527595 3.48090441151696 3.80035499296452 3.94616876509844 3.21893425171368 3.44109404018553 3.69412279245765 3.40477585199990 3.62510202635161 3.69261389939361 3.84592497837029 0.214729895513674 0.204969421251164 0.208835599390482 0.210466341592647 0.205232412300207 0.215436431562783 0.204969421251164 0.207332883792066 0.221447793467498 0.206810057942027 0.207226195753046 0.207624832328417 0.215050031795212 0.208849393838121 0.206502455649915 0.204969421251164 0.204969421251164 0.212930085419684 0.215364195693060 3 3|0 +|/ 2877351 2878073 2877660.125 2873455 2878597 + gene protein_coding_gene FALSE TRUE AT3G09360.1 RNA polymerase II transcription factor similar to RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT2G45100.1); similar to MEE65 (maternal effect embryo arrest 65), RNA polymerase II transcription factor/ cation:chloride symporter [Arabidopsis thaliana] (TAIR:AT2G01280.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE92419.1); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Brf1-like TBP-binding; (InterPro:IPR011665); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.176399962304514 -1.35717323213189 0.202209776787442 1 0.246494846598004 6.84905721651852 -0.176399962304514 0.167613149381620
AT2G02970_at 7.44501299648374 7.35593709139206 6.96597297751471 7.18325358528335 7.81665028531278 7.68057837766869 7.53948676415694 7.36990039899634 7.33216647861818 6.69759071377284 7.21656625149411 6.74008836502561 6.81444594830709 6.8809547983099 6.48940047908128 6.64401741628089 6.61503135351992 6.55013244366125 6.86802909668644 0.204090657254829 0.198775979560478 0.205107673385969 0.21651242857584 0.200236354552454 0.223355966702408 0.206042920148633 0.201521195808165 0.230252347999836 0.202259352167051 0.203614076869626 0.208459548639208 0.208184938060046 0.217087862660700 0.201810856764082 0.211060547568384 0.214882690529504 0.212268482233699 0.205752082059021 2 2 - 865486 866146 865696.364 865069 868288 - gene protein_coding_gene FALSE TRUE AT2G02970.1 nucleoside phosphatase family protein / GDA1/CD39 family protein similar to nucleoside phosphatase family protein / GDA1/CD39 family protein [Arabidopsis thaliana] (TAIR:AT1G14230.1); similar to Nucleoside phosphatase GDA1/CD39 [Medicago truncatula] (GB:ABE85847.1); contains InterPro domain Nucleoside phosphatase GDA1/CD39; (InterPro:IPR000407) -0.119034818689099 -1.35708693577066 0.202236354980886 1 0.24639463033853 14.274478257094 -0.119034818689099 0.0553830295345423
AT1G02820_at 8.61510750060144 8.7072030465384 10.4792558143508 10.5556571810766 10.1808186219702 10.0771294573003 11.6343029046506 11.6974858381695 9.31657995292136 10.0072658921583 9.4053847449415 8.88640168617986 10.5876870435805 10.1324368711009 8.26397490722315 10.5297356374378 11.1661200156178 9.6144681588229 9.9493880225261 0.114312580924443 0.115140793242300 0.11313524013 0.104867757447229 0.106437142420172 0.115889171542780 0.111396714854530 0.112320284573353 0.129145753271894 0.107890128297749 0.108501423208544 0.112576310819582 0.110694376306703 0.116145074942563 0.115130945815083 0.111452928863646 0.109511432449556 0.114919430418603 0.109028804892781 1 1|0 -|/ 623948 624273 624104.9 623765 624475 - gene protein_coding_gene FALSE TRUE AT1G02820.1 late embryogenesis abundant 3 family protein / LEA3 family protein similar to SAG21 (SENESCENCE-ASSOCIATED GENE 21) [Arabidopsis thaliana] (TAIR:AT4G02380.1); similar to late embryogenis abundant protein 5 [Nicotiana tabacum] (GB:AAC06242.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) 0.112610978381158 1.35704982635294 0.202247785108381 1 0.246351536389449 20.0338804234064 0.112610978381158 0.0295017774153679
AT4G38900_at 5.49242476427073 6.24635268823505 5.16875662779343 5.10860886673952 5.64687147388806 5.89089468472629 5.5214695198934 6.46905469116785 5.70057409175649 5.68863803841092 5.72368423397591 5.80407749909173 5.95140468948463 5.7993809060933 5.94606912399996 5.68429530049835 5.3585379682763 5.90048474259092 5.73346655874378 0.214403398126716 0.204942454665892 0.208475194017024 0.203431032404486 0.207373804160931 0.210217082121518 0.201844632718184 0.207722532064509 0.237899876933993 0.204811868100901 0.204431737641376 0.204759783832918 0.204841893881398 0.212962934539993 0.205864689052459 0.199091930608427 0.214160842451077 0.201627577288383 0.201684532550543 4 4|0 -|/ 18139600 18140417 18140072.444 18139316 18141977 - gene protein_coding_gene FALSE TRUE AT4G38900.1|AT4G38900.2|AT4G38900.3 bZIP protein|DNA binding similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT2G21230.1); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT2G21230.1); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.207555128786969 -1.35670164196249 0.202355056090702 1 0.245947240677445 11.4323298500752 -0.207555128786969 0.214021121896870
AT2G07505_at 2.75932224240494 2.62662110516231 2.91802632481777 3.21940109709316 2.54996409255735 2.73507419879490 2.58982901592390 2.35226787140157 2.82313529822475 3.13025284913335 2.82411616867284 2.79469372173235 2.95041047930863 2.48632150776891 2.41874439312884 2.46254414080681 3.13729990284678 3.16795529039302 2.44685160262874 0.196956519751277 0.194449381908219 0.194306908261334 0.201107725352685 0.192851679837822 0.202859325988326 0.197683222929185 0.194688348466279 0.193645101268462 0.195977646815308 0.203210427429455 0.194139723630024 0.193413978389447 0.191117264475734 0.199306309901252 0.1943534439653 0.194596044109745 0.194488158524946 0.191918162606597 2 2|0 +|/ 3125682 3126141 3125923.8 3125668 3126170 + gene protein_coding_gene FALSE TRUE AT2G07505.1 similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17277.1); similar to GRF zinc finger containing protein [Brassica oleracea] (GB:ABD64950.1) 0.126893576756305 1.35589693300336 0.202603157362457 1 0.245013122145544 5.50898355214176 0.126893576756305 0.0772253202062363
AT3G05780_at 1.41997697413896 1.12121193960795 1.23330670787547 1.62262147604410 1.09584518048557 1.26106641003017 1.05375177782928 1.14538026646793 1.70093284201833 1.43535272845221 0.839773324512402 0.813884486420492 0.75192241946426 0.924644819125529 1.25989956527431 1.07294952080555 1.53839487849922 1.82118644818203 1.39882900426890 0.191601482713507 0.182998319380455 0.183335308529737 0.180334125894552 0.181300734977808 0.188342071293681 0.186328210534930 0.183524122416754 0.183738084828278 0.187786868375310 0.183240679630750 0.179742492961275 0.194977035276343 0.183155102632118 0.183246264670471 0.179173332290795 0.184998777442460 0.200266151365821 0.183663005556562 3 3|0 -|/ 1715033 1715597 1715412.7 1714947 1719614 - gene protein_coding_gene FALSE TRUE AT3G05780.1 Lon protease, putative Identical to Putative Lon protease homolog 3, mitochondrial precursor (EC 3.4.21.-) (LON) [Arabidopsis Thaliana] (GB:Q9M9L8); similar to LON_ARA_ARA (Lon protease homolog gene), ATP binding / ATP-dependent peptidase/ serine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G26860.1); similar to Lon protease, putative [Arabidopsis thaliana] (TAIR:AT3G05790.1); similar to Lon protease homolog 2, mitochondrial precursor (GB:P93648); similar to putative Lon2 protease [Oryza sativa (indica cultivar-group)] (GB:AAO34661.1); similar to putative LON3 protease [Oryza sativa (indica cultivar-group)] (GB:AAY21162.1); contains InterPro domain Peptidase S16, active site; (InterPro:IPR008268); contains InterPro domain Peptidase S16, lon C-terminal; (InterPro:IPR008269); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Peptidase S16, ATP-dependent protease La; (InterPro:IPR004815); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.132871610681602 -1.35538533624689 0.202761020218317 1 0.244419450673106 2.56391348707591 -0.132871610681602 0.091001148197625
AT2G04350_at 9.16493707834918 9.17223538381552 9.52571474891465 9.3759220140994 9.44661320965557 8.98823376219908 9.92307173591867 9.6517311500553 8.6467079237042 9.1305481508964 8.51152370822293 8.61411019238838 8.90315915483225 8.9155018368231 8.4144033427213 8.7640548507456 8.9567020884621 8.69755606644312 8.76759415155618 0.101563918649597 0.0981459009626105 0.100404505766353 0.099524363522503 0.097907377510544 0.099942069742317 0.105197010714963 0.0974961178629462 0.0979038422171304 0.100220347583033 0.103998496273111 0.0989501282739144 0.0928634945230019 0.097150397284901 0.105230964343814 0.098596008435234 0.108803533538011 0.095494095839003 0.0963774420363995 2 2|0 +|/ 1518529 1519093 1518813.2 1515802 1519305 + gene protein_coding_gene FALSE TRUE AT2G04350.1|AT2G04350.2 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to Os05g0317200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055177.1); similar to putative long chain acyl-CoA synthetase 9 [Trifolium pratense] (GB:BAE71220.1); similar to long chain acyl-CoA synthetase [Brassica napus] (GB:CAC19877.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.135014953478287 -1.35439524885635 0.203066820986761 1 0.243270962239906 18.1912622922753 -0.135014953478287 0.095764854708969
AT1G46840_at 0.320979669916567 0.137907482223511 0.474310239393028 0.159077751552842 0.422556166452481 0.398877238373924 0.425493675809027 0.440740178678301 1.10753528201485 0.528247402311622 0.371574122086584 0.490910013469614 0.471152283716204 -0.128678327188955 0.850526673505015 0.161610416987469 0.659048304987322 0.228358531064784 0.354185384148311 0.194106288887870 0.186197920964315 0.192674050378869 0.192740947337511 0.187913299887802 0.190165425262904 0.191111730749664 0.193470255026000 0.192535246984361 0.190427589477655 0.199263037873919 0.194920040168216 0.196365140017953 0.191675537152939 0.193986573700754 0.190051419834819 0.208350372825170 0.194200948213361 0.189411290648183 1 1 + 17273478 17273983 17273708.364 17272625 17274146 + gene protein_coding_gene FALSE TRUE AT1G46840.1 F-box family protein similar to F-box protein-related [Arabidopsis thaliana] (TAIR:AT1G46984.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.121417419938436 -1.35429264494942 0.203098533395887 1 0.243151976032646 0.87318552121001 -0.121417419938436 0.06327274562166
AT4G29960_at 7.7526809578009 8.33763155068371 7.5103370282656 7.81742276695577 8.5806403985279 7.53764566649616 7.60212810434056 7.41056050114396 7.2504065553785 6.58852789865455 6.34767966533255 6.74071157084814 6.29199419654001 6.32967230581209 6.59796860225421 6.43533359836322 5.8983188838672 6.68352611388986 6.91750790500751 0.205126639645006 0.208489292497822 0.212609081038431 0.208446867554798 0.206495792452301 0.229661022463445 0.198323036877156 0.210848732972483 0.198609849131029 0.195803426619875 0.198474222113025 0.195803426619875 0.198611285755302 0.202530304504371 0.202386748715310 0.198777035884916 0.217219089637228 0.200912622150254 0.198469115275171 4 4 - 14660767 14661886 14661235.273 14660573 14662409 - gene protein_coding_gene FALSE TRUE AT4G29960.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84586.1) -0.208701157998851 -1.35419227888618 0.203129558125226 1 0.243035590970551 14.4858632401736 -0.208701157998851 0.216214818631485
AT4G25990_at 1.48709913029981 1.18204280200003 1.11352843229866 1.50905320911687 1.20048118930427 1.35851061154826 1.51246980025508 1.22689181498551 1.67253481551767 1.5508651214607 1.50055802289906 1.44932983875980 1.43111146831281 1.60039203555215 1.44420791068719 1.77873901098949 1.29463392799035 1.31026294674548 1.86668582897643 0.206650595462113 0.199414500353636 0.209778396101028 0.204788124957561 0.205123984466761 0.202010029465964 0.202360362088734 0.205640271310907 0.20267436515285 0.208793523420683 0.197472446234427 0.202311572500677 0.209306095844104 0.202262923896555 0.204860909070769 0.211276460657868 0.207917182014489 0.201280301034348 0.208107628864876 4 4|0 -|/ 13192179 13192886 13192658.5 13191699 13193552 - gene protein_coding_gene FALSE TRUE AT4G25990.1|AT4G25990.2 CIL chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes similar to CIA2 (CHLOROPLAST IMPORT APPARATUS 2) [Arabidopsis thaliana] (TAIR:AT5G57180.2); similar to putative stress resistance-related protein [Oryza sativa (japonica cultivar-group)] (GB:ABF00989.1); contains InterPro domain CCT; (InterPro:IPR010402) -0.138636693197160 -1.35388148883129 0.203225653215393 1 0.242675234652783 2.91018444900621 -0.138636693197160 0.103258296547969
AT2G44510_at 2.00732865690082 2.44072840799488 2.14096308919364 2.33213420518218 2.26357676763523 1.71833996251334 1.64178471747155 1.41365549032184 0.798867056177793 1.16078069148877 1.31943494869822 1.59567458230741 1.14524123812282 1.37686633761623 0.852521624424779 1.16389178390163 1.36547715521991 1.15639923788153 1.57296815048519 0.191860555102714 0.197383508755379 0.208787202662563 0.191816085869951 0.193617028113909 0.188270523826666 0.188982443818291 0.189252989604877 0.196811465413231 0.194208967072964 0.196378356178294 0.190373166090132 0.202577838700860 0.188773841756953 0.188270523826666 0.188270523826666 0.208935422571500 0.198047245579094 0.195972928765345 2 2|0 +|/ 18385070 18386078 18385546 18384146 18386286 + gene protein_coding_gene FALSE TRUE AT2G44510.1 p21Cip1-binding protein-related Identical to Protein BCCIP homolog [Arabidopsis Thaliana] (GB:O64885;GB:Q94AZ3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03830.1); similar to Os03g0853900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051933.1); similar to putative p21 C-terminal-binding protein (alternative splicing products) [Oryza sativa (japonica cultivar-group)] (GB:AAO66531.1); contains domain gb def: Expressed protein (At2g44510/F4I1.32) (PTHR13261:SF2); contains domain FAMILY NOT NAMED (PTHR13261) 0.153639459381570 1.35365869630421 0.203294563064218 1 0.242416945119220 3.20705241027109 0.153639459381570 0.131077668256998
AT2G45070_at 10.3543628618132 10.2292333613926 10.5338145515759 10.5463246165478 10.0931120872801 9.97623014723272 9.82806732116275 9.85044544954718 10.4106567484292 9.86932515340547 10.0048427955907 10.2422726987866 10.0004434951662 10.1033697069626 10.0811718737004 9.79938878962505 9.83210770305499 10.1559075631338 9.79352206398522 0.105968137373465 0.0961072420838063 0.100064839823978 0.107541687624827 0.0941487321930853 0.104247778606237 0.0951659503322415 0.094947034991539 0.096962853027144 0.0921092327892954 0.0927614633919924 0.09084070037232 0.097685588238286 0.0928019286298121 0.0909859497449368 0.096207098435082 0.105762629277790 0.0949120707773098 0.0956374542816032 2 2 - 18594289 18594468 18594399.818 18594092 18595452 - gene protein_coding_gene FALSE TRUE AT2G45070.1|AT2G45070.2|AT2G45070.3|AT2G45070.4 SEC61 BETA (suppressors of secretion-defective 61 Beta); protein transporter|SEC61 BETA (suppressors of secretion-defective 61 Beta) Sec61 Beta Subunit Identical to Protein transport protein Sec61 subunit beta [Arabidopsis Thaliana] (GB:P38389); similar to sec61beta family protein [Arabidopsis thaliana] (TAIR:AT3G60540.2); similar to Sec61beta [Medicago truncatula] (GB:ABE79095.1); contains InterPro domain Sec61beta; (InterPro:IPR005609) 0.112389929246390 1.35339777714167 0.20337529019699 1 0.242114491485665 20.2024184996653 0.112389929246390 0.0299619860986025
AT4G26460_at 1.28391641303991 1.37037491824686 1.41553536276921 1.65069164601282 1.82018300637969 1.62138004327462 1.81649171028536 1.3009985564953 1.62725339817535 1.69560020399596 1.82680074277461 1.04366707047334 1.5358363972373 1.45010803972623 1.83280862626626 1.63891851147183 1.68496845571324 1.84729700031439 1.21559119800852 0.201577551509655 0.201577551509655 0.209370507016414 0.205700901451902 0.208926215146695 0.205835560776141 0.204460294347472 0.207063478174601 0.216605704421457 0.207030058468562 0.203249064901955 0.202137703762937 0.204176404704221 0.210924259480254 0.213167340354983 0.2054888423434 0.201577551509655 0.211018758364720 0.218721116635993 4 4 + 13369556 13369987 13369740.9 13369541 13370019 + gene protein_coding_gene FALSE TRUE AT4G26460.1 similar to GAMT1, S-adenosylmethionine-dependent methyltransferase/ gibberellin carboxyl-O-methyltransferase [Arabidopsis thaliana] (TAIR:AT4G26420.1) 0.139368893598052 1.35253677569319 0.203641868971950 1 0.241116715875675 3.09512922650818 0.139368893598052 0.104984344626261
AT3G01530_at 1.85007688448054 1.30112325429208 1.79437769383096 1.66990817623080 1.68414177466506 1.75702451272389 1.60130958166507 1.66614723250475 1.34808076102052 1.71061608008567 1.78262549107723 1.52697325027983 1.4469028516658 1.10361104329286 1.61038154906783 1.55291142945726 1.58778291593293 2.25729589002401 1.31415274459941 0.223964889708445 0.220036364210331 0.214230192052138 0.225229668869358 0.216500342139336 0.223137911700722 0.217735512750871 0.213748498094951 0.222454049253436 0.213971850018718 0.221682952328154 0.210913490320720 0.216199695881159 0.215555266660326 0.213881932305659 0.210648619716989 0.212944254877130 0.211654907149325 0.216615493993234 3 3|0 -|/ 210374 211030 210589.1 210126 211811 - gene protein_coding_gene FALSE TRUE AT3G01530.1 AtMYB57 (myb domain protein 57); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to ATMYB21 (MYB DOMAIN PROTEIN 21), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G27810.1); similar to Myb26 [Pisum sativum] (GB:CAA71992.1); similar to MYB transcription factor MYB181 [Glycine max] (GB:ABH02847.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.136321412579127 1.35250301726434 0.203652326994396 1 0.241077603660388 3.19860217938327 0.136321412579127 0.0988623237619822
AT1G73930_at 4.3288629774388 3.90852723232096 4.08824330299428 3.89929970958118 4.47136195630303 4.17566546985678 4.78985334352104 4.20840200926055 4.11273565912802 3.97255675536372 4.32646544359331 4.85866072809739 4.25795410836889 4.34460279633993 4.60029370419282 4.59964343094137 4.08221034518828 4.50092796655072 3.85706469550909 0.244297688583978 0.240294132863016 0.246339789055481 0.245282222536593 0.234037166954604 0.243450558527626 0.238866650082938 0.249014021411949 0.250498064785074 0.234441066685713 0.238813431663856 0.23712863421782 0.236414369248132 0.243021888554471 0.234037166954604 0.238194909927983 0.252657830474817 0.239122835420807 0.239776377564844 1 1|0 -|/ 27799022 27799877 27799512.3 27798781 27801642 - gene protein_coding_gene FALSE TRUE AT1G73930.1|AT1G73930.2 similar to Os03g0259700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049615.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95074.1); contains InterPro domain Protein of unknown function DUF1630; (InterPro:IPR012860) 0.157645165561979 1.35235025348654 0.203699657259731 1 0.240900621304706 8.44734225953093 0.157645165561979 0.138216831207424
AT1G60860_at 3.7312232394559 3.22892310715576 3.06818970108885 2.98571286380931 3.42218509421308 3.27454587737509 3.75237372782825 3.13087658898988 3.19217965806059 3.32418655714852 3.29471389402230 3.51928373346739 3.22453008847727 3.34094142334344 3.62163929637075 3.1799248650169 3.48986637289348 2.95480234498591 3.60562980256046 0.212929852289179 0.210506002889215 0.211807687867634 0.209909665500903 0.209178906740301 0.215768843465032 0.213233686064083 0.219455999123532 0.221740742555519 0.213658811663337 0.221180610962963 0.213991475779252 0.213404209854825 0.209960595150391 0.211593415030486 0.209934232993854 0.216695879733319 0.209178906740301 0.212527431535873 1 1|0 -|/ 22404920 22405430 22405202.3 22404909 22411442 - gene protein_coding_gene FALSE TRUE AT1G60860.1 ARF GTPase-activating domain-containing protein similar to SFC (SCARFACE, VASCULAR NETWORK DEFECTIVE 3) [Arabidopsis thaliana] (TAIR:AT5G13300.1); similar to AGD4 (ARF-GAP DOMAIN 4), protein binding [Arabidopsis thaliana] (TAIR:AT1G10870.1); similar to Os09g0510700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063635.1); similar to putative ARF GTPase-activating domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01238.1); similar to Os02g0632500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047503.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain BAR; (InterPro:IPR004148); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) -0.159488351001769 -1.35222835302988 0.203737431808032 1 0.240759405090492 6.67535948744553 -0.159488351001769 0.141351223507056
AT1G79080_at 4.59063879673587 4.12993724448181 3.89981092145929 4.08334633780134 3.71995643237881 4.39174600968991 4.21407971056521 3.80150794639503 3.20917480638105 3.37799759133623 3.95908987887123 3.77068604453784 3.52924757782621 3.55207435260109 4.14575512331329 3.94208321722041 4.47326704108414 3.68406740455399 3.54802182257891 0.206613400289552 0.208130822803040 0.196147876896014 0.19899833984045 0.200848169018723 0.200677133214500 0.195959715969836 0.200657192746774 0.206300321929789 0.208692610441980 0.195959715969836 0.200613237729970 0.19762869012183 0.197432812793641 0.202937718186159 0.199463557677379 0.210994405315856 0.199063551860683 0.204231925016891 1 1 - 29752054 29752568 29752305.545 29751865 29753837 - gene protein_coding_gene FALSE TRUE AT1G79080.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15828.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.171654878678408 1.35216096393028 0.203758316859962 1 0.240681341599943 7.73409387665495 0.171654878678408 0.161177716840469
AT1G64660_at 4.38609625104807 4.042996483182 3.1823924617047 3.28078288597107 3.35590327337826 4.52644152901802 2.60565479678093 3.18759106473197 3.12982397174355 2.28111121447026 2.87288275688623 3.83757974766203 3.40613614134777 2.44323087368878 3.48594831253422 3.44941709473415 3.25415326569482 3.1020407891319 3.04806067019419 0.226034822331621 0.229668351392235 0.229251481818023 0.242234139335606 0.228775437625137 0.264670554932558 0.236634666445509 0.232540819998198 0.245331434061599 0.241911652888222 0.227490372228614 0.230104162078715 0.226966465082726 0.240925103127717 0.227175256279211 0.228485964989559 0.226034822331621 0.239396799339139 0.226034822331621 1 1 + 24033501 24034108 24033894.364 24032581 24034443 + gene protein_coding_gene FALSE TRUE AT1G64660.1 ATMGL; catalytic/ methionine gamma-lyase Encodes a functional methionine gamma-lyase, a cytosolic enzyme catalyzes the degradation of methionine into methanethiol, alpha-ketobutyrate and ammonia. The catabolism of excess methionine is important to methione homeostasis. similar to MTO1 (METHIONINE OVERACCUMULATION 1) [Arabidopsis thaliana] (TAIR:AT3G01120.1); similar to Os10g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065069.1); similar to rrj1 [Oryza sativa] (GB:BAC20137.1); contains InterPro domain Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; (InterPro:IPR000277) 0.221276862911464 1.35213962629933 0.203764930133087 1 0.240656624659797 6.59652679731654 0.221276862911464 0.234500739454209
AT1G80420_at 7.39047860934207 7.35094792346767 7.3537561257993 7.11021371400751 7.56818095725731 7.39582014751528 6.76524070219907 6.26563132308935 6.88560876480842 6.3450332504957 6.32532493102543 6.25704321245515 6.88768890522202 6.64235880067808 5.4949460802246 6.85654441158855 6.51654068661651 6.99030068157417 6.67636447686133 0.177357031209082 0.177324473051756 0.185708225165744 0.180254778625556 0.18013549858431 0.180006202648223 0.177324473051756 0.177324473051756 0.198741862093241 0.183160016529975 0.180000754991130 0.181173982492103 0.184358148977445 0.189493579228543 0.184692298502101 0.177324473051756 0.182652719142757 0.189035274398965 0.178843223535294 1 1 - 30241378 30241893 30241656.556 30240112 30243427 - gene protein_coding_gene FALSE TRUE AT1G80420.1|AT1G80420.2|AT1G80420.3 DNA repair protein, putative (XRCC1) similar to Os06g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056780.1); similar to hypothetical protein LOC445480 [Danio rerio] (GB:NP_001003988.1); contains InterPro domain BRCT; (InterPro:IPR001357) 0.137296364785780 1.35207813014708 0.203783990924946 1 0.240585390666033 13.7160398350321 0.137296364785780 0.100936031488395
AT2G41350_at 5.07677913580307 5.92477300770589 4.46370162091263 4.87570382235326 5.14883780391995 5.30569716483749 5.95417551784208 5.9536699747428 4.76030895552774 5.31339703332877 5.75785110405513 6.0451280956815 5.33955274006836 5.62449051751263 5.78958043624065 5.42145838622882 4.82236984456432 4.98189972798879 5.05396616747655 0.211384082164085 0.209501491835140 0.212704813460655 0.206534579776794 0.207823298010543 0.225336481020267 0.20988555475996 0.214392285064474 0.224929890862774 0.205920661733841 0.212418033132716 0.207952060481361 0.208121991595612 0.211393398939913 0.209768413872256 0.214342177856951 0.225703340465323 0.213765812420805 0.21291985385806 2 2|0 +|/ 17239128 17240461 17239846.111 17238419 17240635 + gene protein_coding_gene FALSE TRUE AT2G41350.1|AT2G41350.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21980.1); similar to Helix-turn-helix, AraC type [Medicago truncatula] (GB:ABE89508.1) -0.174315167459729 -1.35203950309515 0.203795964174655 1 0.240540648207233 10.5955916270081 -0.174315167459729 0.165395770283029
AT1G14830_at 7.64076520789085 7.77098485247877 7.56163064952797 7.48230810332628 7.96626978847293 7.67672756075877 7.98685086955614 8.04347809531719 7.68526599034901 7.88909769026662 8.0388160551407 7.89124434998426 7.30448514680925 7.63832126318847 8.0431647590706 7.59666594312793 7.35835533940608 7.94943849382685 7.75742577581897 0.135676859728802 0.129913912216822 0.130623244592015 0.131264429182323 0.129339124223497 0.133881827602037 0.132668623396569 0.128115319171863 0.142892137931176 0.125462248251574 0.128336833337620 0.129006431424664 0.129323448421637 0.14639686443809 0.126426352170536 0.128913663745954 0.133615532558355 0.134888166268689 0.126156820214493 1 0|1 /|- 5107701 5108338 5108062.556 5107416 5111665 - gene protein_coding_gene FALSE TRUE AT1G14830.1 ADL1C (DYNAMIN-LIKE PROTEIN 5); GTP binding / GTPase Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts. Identical to Dynamin-related protein 1C (Dynamin-like protein C) (Dynamin-like protein 5) (Dynamin-like protein DLP1) (DRP1C) [Arabidopsis Thaliana] (GB:Q8LF21;GB:Q8S3C8;GB:Q9FNX6;GB:Q9LQU8;GB:Q9SE81); similar to ADL1D, GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT2G44590.3); similar to ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN), GTP binding [Arabidopsis thaliana] (TAIR:AT5G42080.1); similar to ADL4/ADLP2/DRP1E/EDR3 (DYNAMIN-LIKE PROTEIN 4), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT3G60190.1); similar to SDL5A (GB:AAC49183.1); similar to Dynamin central re (GB:ABE90709.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58207.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.119243732057423 -1.35187787210843 0.203846071366452 1 0.240353437463242 15.5185391763982 -0.119243732057423 0.0574714946268954
AT3G59130_at 0.846781960900227 1.27966769986390 1.25766330572965 0.864144894940173 1.03942468636886 1.55698171943193 1.43802180407517 1.48710383115172 1.41630663804992 1.24230956105022 1.05356581060867 1.58142552706204 0.754101507820517 1.31597482071751 1.20393911200851 0.878929164102364 0.882682913365944 1.56300105962394 1.48960862219985 0.250670000849855 0.241405223580805 0.248461705638844 0.245443151671888 0.23855700697118 0.244472067357958 0.241543376212569 0.241425517731563 0.246588973720825 0.249645468532053 0.244485326808567 0.243600962893715 0.240272477636561 0.23855700697118 0.23855700697118 0.23855700697118 0.258985561346031 0.244513630912096 0.243092247036531 3 3 - 21872247 21872819 21872480.5 21871963 21873784 - gene protein_coding_gene FALSE TRUE AT3G59130.1 similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G59120.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.155939645033205 -1.35168984103466 0.203904375725721 1 0.240135667935407 2.48969578606455 -0.155939645033205 0.135439033414629
AT1G71000_at 1.59556336739704 1.30177673535005 1.79676092798958 1.38775304698537 1.40105401389267 1.79160078135004 1.11978072174334 1.45328285871529 1.50689314308114 1.52501734888455 1.32645256769150 1.07509673059206 1.50254259831378 1.59850180910801 1.61244433874391 1.4989839612768 1.65983856487311 1.86236040568899 1.30139497246778 0.190682715965846 0.193944547544331 0.191235992446041 0.197395329941688 0.191010223161012 0.196452999411028 0.195746500634967 0.199097170548546 0.205591928241373 0.19688957157927 0.197450418304792 0.192656780170128 0.19908847467418 0.197503924794321 0.192814393051031 0.192353519405765 0.200858504268418 0.204457416158879 0.196254714357212 1 1|0 -|/ 26773000 26773743 26773408.6 26772998 26773773 - gene protein_coding_gene FALSE TRUE AT1G71000.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G56300.1); similar to DnaJ-like protein [Glycine max] (GB:AAM23263.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.149641869488926 1.35138377571366 0.203999309579407 1 0.239781240803352 2.96167794510151 0.149641869488926 0.124472926017246
AT3G48520_at 1.98265148197341 1.95864059896504 2.18756834012501 1.83717871633661 1.88038236840586 1.92801663891917 1.86508272284340 1.78669451007595 2.07224478754655 2.62861222802998 1.66042278803576 2.01805938758534 1.96299828561622 1.8053160181395 1.76995367908297 2.12026052195557 2.4907703591494 1.92046417576978 2.11066604962036 0.196854556632837 0.198751094147468 0.204719598281773 0.198482450342406 0.195677669816531 0.200347275484478 0.196605282768564 0.199481668445235 0.196010887044708 0.203978252887627 0.199946797481961 0.196763835323562 0.200112106224436 0.196643838409004 0.200881269225749 0.195677669816531 0.202013978047895 0.199990715466957 0.198301731077502 3 3 - 17986132 17986592 17986356.909 17985962 17987655 - gene protein_coding_gene FALSE TRUE AT3G48520.1 CYP94B3 (cytochrome P450, family 94, subfamily B, polypeptide 3); oxygen binding member of CYP94B similar to CYP94B1 (cytochrome P450, family 94, subfamily B, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G63450.1); similar to Os11g0483000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067905.1); similar to Cytochrome P450 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93683.2); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.120978924499966 -1.35117663756156 0.204063579519061 1 0.239541403818665 4.04779609236345 -0.120978924499966 0.0628174476861645
AT1G28327_at 0.859994438814132 1.39559982482119 1.43500715125781 1.53645219209265 1.13379205907154 1.49554676477304 1.64756739916007 1.33009256382371 0.786638704704914 1.2477565628177 1.50174748652984 1.28113833537714 1.48184359820552 0.94629021620297 1.19145414338994 0.86881992031894 1.62772361822739 0.991737692510726 1.04801496734993 0.206860309257738 0.209342079371951 0.208438564359345 0.207429013568235 0.203745338344377 0.209523469601425 0.207618879233151 0.209072519144334 0.217565754250676 0.210782802946948 0.204051774704390 0.207561761539115 0.210666224720850 0.203764381502573 0.211050056760162 0.203745338344377 0.206591787384559 0.209657048286347 0.210312152457402 1 1|0 +|/ 9932362 9932976 9932662.5 9931921 9933438 + gene protein_coding_gene FALSE TRUE AT1G28327.1 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G03770.1); similar to putative zinc finger protein [Lycopersicon esculentum] (GB:ABH07901.1) 0.150380141599223 1.35111018041769 0.204084203121388 1 0.239464461113105 2.48616377654485 0.150380141599223 0.125845485264359
AT2G36210_at 1.36613535720634 0.988328351369697 1.74584587801714 1.23790578847145 1.95136642494238 1.47131818523558 1.79865925628915 1.11247342934925 2.06599353008615 1.63979765602792 1.71254759317878 1.59896426365164 1.79418322907724 1.51836952329107 1.97972096730485 1.70763970707723 2.11210973450120 1.64124769367546 1.31621534158787 0.184834570252598 0.191733699137235 0.190881738981320 0.198114642322495 0.182447961896305 0.181454490324023 0.181505211931723 0.18651314933697 0.191858764357952 0.187463706069092 0.182157558138802 0.189175813658729 0.189416089253586 0.192930579007617 0.184017497398018 0.183122377510266 0.182506201149085 0.192659682664752 0.189152796762148 2 2 - 15193422 15193741 15193594.273 15193119 15193883 - gene protein_coding_gene FALSE TRUE AT2G36210.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G34780.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABD32678.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.184652816841034 1.35036664775448 0.204315061211493 1 0.238603792115979 3.17505409129529 0.184652816841034 0.181669367948469
AT3G09480_at 2.38455139951508 2.01201688050727 2.29176678083742 2.3526432038012 2.06572039259652 2.25231501635616 2.05956175134745 2.09540154363332 2.59694247326523 2.26943324114766 1.77097064994125 2.17066006444463 2.21597965978987 2.30155393472684 2.26079031129726 2.26308670391799 2.15283680895469 2.32086754195292 2.73632212533768 0.186717589222033 0.180208153998895 0.182927595191026 0.184217910003957 0.180208153998895 0.180208153998895 0.181377135251103 0.183590132014885 0.186968881968252 0.191170472871238 0.189740597349823 0.182270072614270 0.188473260682634 0.181890382147178 0.182946945459472 0.184129110244330 0.19336316902802 0.191338142142063 0.181115792831051 3 3 - 2914913 2915141 2915012.364 2914720 2915327 - gene protein_coding_gene FALSE TRUE AT3G09480.1 histone H2B, putative Identical to Histone H2B.5 (HTB7) [Arabidopsis Thaliana] (GB:Q9SF55); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT5G02570.1); similar to Probable histone H2B.3 (GB:Q1SU99); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.124705474612479 -1.35006492838888 0.204408803353404 1 0.238254632898045 4.54741003238849 -0.124705474612479 0.0731327352942562
AT3G57320_at 4.96075907430342 5.74565181493168 5.12834020893414 5.00896344989714 6.26771671646267 5.51604713292298 6.63663861609843 6.73837038301876 6.2833433599218 7.08908907787229 7.40607549810966 6.5918291022354 6.80927421214774 7.19295961394864 6.8181944226903 6.94529283852298 6.61158758695127 6.78328037009841 6.83253082386068 0.263471082973477 0.257127229782069 0.258745840102959 0.261647970375971 0.252076979230768 0.259179371614456 0.251907776498272 0.258207628316808 0.259130631111436 0.258697738624508 0.253740052367577 0.250422859089612 0.250422859089612 0.251425413389357 0.251878222230446 0.250422859089612 0.269536926171694 0.256768020103735 0.257130173106205 3 3|0 +|/ 21221076 21221601 21221378.222 21220936 21221842 + gene protein_coding_gene FALSE TRUE AT3G57320.1|AT3G57320.2 |unknown protein similar to Os07g0661700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060540.1)| -0.190132071665357 -1.34986749438732 0.204470164079821 1 0.238026185111791 12.5652106543076 -0.190132071665357 0.190018744355330
AT2G20370_at 6.17893876783563 6.39186729513521 5.55689807026652 5.86910449287559 5.50210435090617 5.35198660479824 6.32684926687187 6.7811266120647 5.60205676991441 5.88479136787554 6.59029374663802 7.02599319882875 6.5975458694684 6.34355874200526 6.20819147315166 6.25858408792254 5.55257369337459 6.35944672030672 5.90132234734683 0.218712008572386 0.209841963598921 0.223695111084288 0.218707597312751 0.204087227805681 0.224495611744436 0.210392346948228 0.215621508133388 0.218259433219356 0.215042494866395 0.207659064580839 0.208535701392671 0.207368433387100 0.214517083806241 0.204087227805681 0.208979359343691 0.211192342605393 0.212898499197807 0.211304089582414 2 2 + 8800707 8801224 8800934 8799067 8801482 + gene protein_coding_gene FALSE TRUE AT2G20370.1 MUR3 (MURUS 3); catalytic Encodes a xyloglucan galactosyltransferase located in the membrane of Golgi stacks that is involved in the biosynthesis of fucose. It is also involved in endomembrane organization. It is suggested that it is a dual-function protein that is responsible for actin organization and the synthesis of cell wall materials. Identical to Xyloglucan galactosyltransferase KATAMARI1 (EC 2.4.1.-) (Protein MURUS3) (KAM1) [Arabidopsis Thaliana] (GB:Q7XJ98;GB:Q494P2;GB:Q9SK65); similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT2G29040.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE92010.1); similar to Os03g0144800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048945.1); similar to Xyloglucan galactosyltransferase KATAMARI1 homolog (GB:Q8H038); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.139352746341078 -1.34980364678744 0.204490010617439 1 0.237952312982406 12.0763995675147 -0.139352746341078 0.105508669904981
AT4G00030_at 5.82036448468395 5.9448051161988 5.74250651637044 5.9586204466474 6.22802192886346 5.86425834333633 6.11741225425974 6.30050743417628 6.11739918259454 6.00907808820977 6.54799421790728 6.36634176811308 6.03205647446627 6.77900708966364 6.22227827109433 6.62020162075946 6.23430479180342 6.03342369030462 5.87306929417358 0.224677578218706 0.202660686965097 0.206808559307132 0.196493000421753 0.197292714958979 0.203944195674397 0.201938989523629 0.211784866011944 0.212794370803661 0.204094336442031 0.202433485361191 0.198493106471225 0.200903189428397 0.200164887767846 0.205134863753184 0.199799861015572 0.220610929288142 0.204761501397373 0.214983626816079 4 4 + 13617 14328 13887.727 13527 14413 + gene protein_coding_gene FALSE TRUE AT4G00030.1 plastid-lipid associated protein PAP / fibrillin family protein similar to PAP fibrillin [Medicago truncatula] (GB:ABE86074.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) 0.128590810998049 1.34973454832205 0.204511491148963 1 0.23787236827745 12.1742119883204 0.128590810998049 0.0826394444320982
AT2G10050_at 2.2811737302096 1.97684934772966 2.21889841047668 1.71374147715255 1.73884917685203 2.08494207153783 2.23203393130074 1.99343057527071 2.43449286751454 2.19579584233703 2.39122429206741 1.78597503722646 2.16054122826388 2.28679285809232 2.31067971714482 1.98002763182180 2.4063834998039 2.14361176092582 2.27339116473728 0.208697322321234 0.212844361451579 0.219356941522654 0.209667106769749 0.213263030826032 0.212003871959212 0.222712984040649 0.217995750886631 0.211753464601435 0.21660141389112 0.215937342907536 0.208360124235404 0.211922458882628 0.218101616826135 0.217044403111790 0.209463790294500 0.214434034239579 0.214400082142105 0.208800145112913 2 2 - 3820387 3820704 3820533.909 3820372 3820734 - gene protein_coding_gene FALSE TRUE AT2G10050.1 zinc knuckle (CCHC-type) family protein similar to pol polyprotein-like [Solanum tuberosum] (GB:AAU89775.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.149918116908775 -1.34954746495286 0.204569658867545 1 0.237655932985930 4.27218040408185 -0.149918116908775 0.125331333462727
AT2G17110_at 5.33844820126543 5.45432075959522 5.71749407196307 5.46384501874771 6.16794368411538 5.19607041972287 5.26532420715674 4.67826692125368 4.5953886802078 4.51952588189926 4.35760801555763 4.3591873719668 4.67084011518176 4.40530024295097 4.24917655888716 5.12269191971822 4.69658258974465 4.34926137239682 4.63047767658441 0.212994079002519 0.21291491575383 0.218291007253274 0.220518387730896 0.216475511715021 0.216623294581479 0.219669138016812 0.211792593325329 0.217401723026775 0.211792593325329 0.218105854741236 0.212052068972640 0.211792593325329 0.217474477560292 0.214248979506256 0.214858779323030 0.224678011605967 0.216400125965881 0.211792593325329 2 2 - 7450462 7450981 7450759.273 7450062 7453147 - gene protein_coding_gene FALSE TRUE AT2G17110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35240.1); similar to Os09g0547300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063849.1); similar to bzip-related transcription factor -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46467.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.198390943361417 1.34941449534178 0.204611009958733 1 0.237502114051779 9.96427837857634 0.198390943361417 0.202328819081384
AT1G01830_at 6.04853167621185 6.48377779318897 6.34675826325943 6.62883865443258 7.05414341805782 6.2802742310912 5.65020203001732 5.6142342114025 5.00777981602311 5.15149182181886 4.22806828844799 4.76163809699322 4.906846265361 4.54099748328297 4.15178315326107 4.74675465597414 5.60897205347165 5.47077234515138 5.10323845897063 0.235056875581451 0.229483470641994 0.238287701595073 0.233384279739150 0.233106379353729 0.231154340349499 0.230954083871548 0.232189990875632 0.251288129901675 0.228790816562036 0.247685303005702 0.235114197701086 0.229833459768137 0.243777803510763 0.251432158665621 0.231171580148800 0.248775950959203 0.237612696531454 0.232912846118297 1 1 - 298760 299286 299088.909 298535 302315 - gene protein_coding_gene FALSE TRUE AT1G01830.1|AT1G01830.2|AT1G01830.3 armadillo/beta-catenin repeat family protein|binding similar to binding [Arabidopsis thaliana] (TAIR:AT2G45720.2); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88271.1); similar to putative arm repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92297.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47908.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.171396445571913 1.34932913400093 0.204637559415869 1 0.237403373759358 11.2080862388813 0.171396445571913 0.161338161601151
AT2G03730_at 8.04189755369701 8.53864870370122 8.67869202640194 8.80953605564169 9.46641047928038 8.99748147586471 9.6495153892951 9.57609009320397 8.75226614340563 9.39758547355456 9.3564766069797 8.8480745045191 9.05489932167825 8.90596186276094 8.42722512553556 9.42188837187074 9.03887961285813 8.79989466256944 9.78966445908469 0.163954680815549 0.163468870713263 0.168519933186472 0.164989909612316 0.162141509379457 0.171854608723348 0.167980508793265 0.165231099126013 0.186455519591212 0.160910932987243 0.159017162546608 0.160623074030462 0.165100732416557 0.169110097378502 0.167507511690203 0.159017162546608 0.163242522387856 0.178064925097911 0.160506617395830 2 2 - 1137829 1138509 1138157.545 1137608 1140183 - gene protein_coding_gene FALSE TRUE AT2G03730.1|AT2G03730.2 ACR5 (ACT Domain Repeat 5) Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding. similar to ACR4 (ACT REPEAT 4), amino acid binding [Arabidopsis thaliana] (TAIR:AT1G69040.2); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os03g0413100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050359.1); similar to Os03g0598100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050608.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.147508721214474 -1.34929929490402 0.204646840776877 1 0.237368858902577 18.1172012391081 -0.147508721214474 0.121035321309652
AT3G02660_at 4.98008800979238 5.96970961168936 4.57886824242127 4.50101786105534 5.79429134345344 4.45166791145422 6.38146580049608 5.89621887720462 4.73456185822185 5.38004926054955 5.4058850844613 6.03346572513856 5.34417618681309 5.51402630942848 6.69351531158782 5.64618137962968 4.55709148673562 5.12697668573976 5.19575978698304 0.264273889403891 0.260647999139216 0.260544459483502 0.271883635745657 0.265900594092848 0.28228428977188 0.260544459483502 0.269728576927482 0.294207240452515 0.271695096895878 0.264343295765952 0.264368131753118 0.262220048917387 0.266571305959806 0.275187086956095 0.260544459483502 0.288699989958845 0.270956380538169 0.269401950792652 3 3 - 570261 570770 570612.818 570141 572352 - gene protein_coding_gene FALSE TRUE AT3G02660.1 tRNA synthetase class I (W and Y) family protein similar to Os01g0500900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043131.1); similar to Tyrosyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL52305.1); contains InterPro domain Tyrosyl-tRNA synthetase, class Ib; (InterPro:IPR002307); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -0.269350716296282 -1.34924640986084 0.204663291368659 1 0.237307688113031 10.6409768270841 -0.269350716296282 0.300911849095783
AT3G61160_at 5.10194023472623 4.88857776198725 4.40302254182841 4.56408696773387 5.29342492742208 5.6827199692258 3.74725187711259 3.65332952422765 4.73164756054751 3.6590853443397 2.85749276037061 2.88917768466332 3.18044103769838 3.47615302075557 2.85218433359083 2.50380843107864 3.66951807870132 3.05088706286365 3.47614202501866 0.228834646564287 0.224300874156401 0.215686006504504 0.225735398201524 0.225217899666196 0.244650584987488 0.215686006504504 0.219774235437270 0.225090427980279 0.215686006504504 0.219944760174534 0.224615370529483 0.218677396166865 0.218969326745544 0.235617424682748 0.21927002175784 0.217920822590627 0.231453331297829 0.217158452012746 3 3|0 +|/ 22648696 22649529 22649181.667 22646858 22649792 + gene protein_coding_gene FALSE TRUE AT3G61160.1|AT3G61160.2 shaggy-related protein kinase beta / ASK-beta (ASK2) Identical to Shaggy-related protein kinase beta (EC 2.7.11.1) (ASK-beta) (ASK2) [Arabidopsis Thaliana] (GB:O23145;GB:O81710); similar to shaggy-related protein kinase theta / ASK-theta (ASK8) [Arabidopsis thaliana] (TAIR:AT4G00720.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95891.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to shaggy-related protein kinase theta / ASK-theta (ASK8) [Arabidopsis thaliana] (TAIR:AT4G00720.1); similar to Shaggy-related protein kinase theta (ASK-theta) (GB:O04160); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95891.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.128814211690445 -1.34897520245327 0.204747671273050 1 0.236994015350846 8.17458561445827 -0.128814211690445 0.083324936839197
AT1G48690_at 0.58790950987709 0.42219515363061 0.581774610916506 0.577255167696455 0.444041828662081 0.869362583519218 -0.039639415778055 0.588564491456193 0.868651217307591 0.5567271078331 0.576448613752381 0.690450161419917 0.594741930184884 0.80278369976047 1.04210391759413 0.517444808986351 0.923528908559114 0.645358151224501 0.50193667966844 0.193878095321781 0.191219904642238 0.190229683188682 0.19692555100168 0.198422772989120 0.192463271438186 0.193666474528834 0.196922167270290 0.205644442022008 0.204964070970949 0.198251487261844 0.194847263178254 0.199419637680672 0.193793362755608 0.195382732777948 0.191258318190074 0.196925353548554 0.201891091603542 0.202607654902164 1 1|0 -|/ 18012811 18013415 18013073.3 18012725 18013657 - gene protein_coding_gene FALSE TRUE AT1G48690.1 auxin-responsive GH3 family protein similar to auxin-responsive GH3 family protein [Arabidopsis thaliana] (TAIR:AT5G51470.1); similar to Os07g0671500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060599.1); similar to Probable indole-3-acetic acid-amido synthetase GH3.11 (Auxin-responsive GH3-like protein 11) (OsGH3-11) (GB:P0C0M3); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.155010150950473 1.34894435287529 0.204757271234299 1 0.236958338134205 1.18720592068331 0.155010150950473 0.134384447519756
AT1G28300_at 1.46405735333320 1.86524662428160 1.60591073150039 1.86942226592348 1.48508183463748 1.48514881387793 1.88946583379392 1.41455686513633 2.05084625555058 1.82935592044782 1.20090515127433 1.33150973469165 1.91899762057091 1.66286717020428 1.25047064940042 1.47953389570417 1.81544260094317 2.43183471830281 1.75872823575499 0.203485701201262 0.210880398493354 0.20628883942501 0.203948585474402 0.204161533046815 0.203091717633277 0.205651885426142 0.209712830305545 0.207405602106471 0.211798379879701 0.206744290137785 0.211337218475177 0.205121996955859 0.202542028937811 0.205945422574549 0.203951186544197 0.212358999620813 0.207521151091639 0.204586960231909 1 1|0 -|/ 9897047 9899117 9897614.7 9896854 9899863 - gene protein_coding_gene FALSE TRUE AT1G28300.1 LEC2 (LEAFY COTYLEDON 2); transcription factor Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings. similar to FUS3 (FUSCA 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G26790.1); similar to ABI3-like transcription factor [Prunus avium] (GB:AAQ04076.1); similar to viviparous protein; abscissic acid insensitive protein [Prunus avium] (GB:AAQ03210.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.145069517799720 -1.34778038313182 0.205119755631093 1 0.235612630397695 3.39290562192101 -0.145069517799720 0.116850949712450
AT2G42600_at 12.1679491437513 12.3856227014001 12.2759660063156 12.3859732350000 12.4003001501525 12.2594840348258 12.5374662303754 12.6199023075646 12.7093921023948 12.7648316245749 12.6746589560866 12.5651384439280 12.4915827347126 12.4558405360523 12.3152865098487 12.6276442468493 12.6499748460733 12.7014454696905 12.6154313557839 0.0703705842654921 0.0695140832385031 0.0706962514588365 0.0692043265295956 0.0690063191208387 0.0709422643875799 0.0694290378036474 0.0684299107261823 0.0742029757506918 0.0702067814928522 0.0698623827621928 0.0684299107261823 0.0693884309257193 0.068500339096774 0.0713468771520338 0.0684299107261823 0.0709564205027789 0.0698095150587917 0.069160454829502 2 2 - 17741632 17742291 17741929.727 17741402 17746162 - gene protein_coding_gene FALSE TRUE AT2G42600.1|AT2G42600.2 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEPCase 2) (PEPC 2) (AtPPC2) (PPC2) [Arabidopsis Thaliana] (GB:Q5GM68;GB:Q8GVE9;GB:Q9SIN0); similar to ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT3G14940.1); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.3); similar to Phosphoenolpyruvate carboxylase 2 (PEPCase 2) (PEPC 2) (AtPPC2) (GB:Q5GM68); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AAB80714.1); similar to phosphoenolpyruvate carboxylase [Brassica napus] (GB:BAA03094.1); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) -0.116829732772695 -1.34776981256576 0.205123049964433 1 0.235600413053975 25.0074570572513 -0.116829732772695 0.0507815201796528
AT2G18915_at 6.42222696671871 6.57731116142794 6.11868918049603 6.77573883344006 6.44555400113851 6.44228581894826 6.2552440282749 6.59578658055466 6.07540993570387 6.08936586726629 5.99367807749038 6.26544589697488 6.86055153290309 6.7336509592009 6.29798096929494 6.75879225065026 6.57061951598644 5.97875259152403 6.16427296776265 0.212013379051459 0.209759516138742 0.210703838563016 0.210920291742971 0.218368047702753 0.206414042819086 0.214923220351207 0.204089426240964 0.214070748311255 0.211668601426715 0.205718650105960 0.207458924404756 0.204547962017577 0.206571293511842 0.203817965897721 0.212580842914338 0.20706142389386 0.215574501565909 0.217104359699542 2 2 - 8201883 8202431 8202207.818 8201654 8204565 - gene protein_coding_gene FALSE TRUE AT2G18915.1|AT2G18915.2 LKP2 (LOV KELCH PROTEIN 2); ubiquitin-protein ligase encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins. Identical to Adagio protein 2 (LOV kelch protein 2) (Flavin-binding kelch repeat F- box protein 1-like protein 1) (FKF1-like protein 1) (F-box only protein 2c) (FBX2c) (ADO2) [Arabidopsis Thaliana] (GB:Q8W420;GB:Q9C5S6); similar to ZTL (ZEITLUPE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G57360.1); similar to FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G68050.1); similar to ZTL [Ipomoea nil] (GB:ABC25060.2); similar to ZEITLUPE [Mesembryanthemum crystallinum] (GB:AAQ73527.1); similar to Cyclin-like F-box; Galactose oxidase, central [Medicago truncatula] (GB:ABE90708.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Kelch repeat; (InterPro:IPR006652)|Identical to Adagio protein 2 (LOV kelch protein 2) (Flavin-binding kelch repeat F- box protein 1-like protein 1) (FKF1-like protein 1) (F-box only protein 2c) (FBX2c) (ADO2) [Arabidopsis Thaliana] (GB:Q8W420;GB:Q9C5S6); similar to ZTL (ZEITLUPE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G57360.1); similar to FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G68050.1); similar to ZTL [Ipomoea nil] (GB:ABC25060.2); similar to ZEITLUPE [Mesembryanthemum crystallinum] (GB:AAQ73527.1); similar to Cyclin-like F-box; Galactose oxidase, central [Medicago truncatula] (GB:ABE90708.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.152837912468588 1.34772727890641 0.205136306089336 1 0.235551253787674 12.7251630202902 0.152837912468588 0.130853274873450
AT1G47200_at 7.85299610114452 8.36957273463488 7.54486368927972 7.89359229790592 7.94276741056589 8.1351600781987 8.42507347448833 8.46964417380015 7.14384235854624 7.2984651648195 7.86497202742566 8.2111818527647 7.97468556721994 7.82118408301141 8.1709849670179 7.67270044806012 7.81211608170694 7.79180550422455 7.24346759910892 0.176103479792751 0.169560744937456 0.173523453111351 0.171756437287233 0.171209423196697 0.171183301921208 0.172315408188967 0.174506870378097 0.191486534766951 0.182571105630423 0.185218740881334 0.169560744937456 0.170313527632075 0.181713247888703 0.178013999314057 0.180452898551536 0.171475257690177 0.175567576876179 0.175009946475155 1 1 - 17300809 17301123 17300937.091 17300471 17301257 - gene protein_coding_gene FALSE TRUE AT1G47200.1 WPP2 (WPP domain protein 2) similar to WPP1 (WPP domain protein 1) [Arabidopsis thaliana] (TAIR:AT5G43070.1); similar to MFP1 attachment factor 1 [Lycopersicon esculentum] (GB:AAF63657.1) 0.143068178453969 1.3475365037645 0.205195772196983 1 0.235330774148451 15.6509815069625 0.143068178453969 0.113144476744085
AT3G04550_at 9.75922516744232 9.64190099922392 9.30692996288216 9.3035193757733 9.73410469584155 9.56634456023212 9.04050340874716 9.28705833909227 8.81677937746033 9.1311422100292 8.85149775149136 9.34834996356648 9.27088415640883 9.19004573794616 9.31421892913148 9.0556609482548 9.25876943411804 8.82971365788 8.89918594195514 0.0946413570220448 0.0896187114231766 0.0922804499424352 0.0997662203538203 0.0942935556090053 0.0951974404606755 0.0928806829787734 0.0905349343156798 0.0943904178052533 0.0964491287581037 0.0948017956481221 0.0940195476250414 0.0931411862529592 0.089802512851425 0.090484639426351 0.0931071026297169 0.095561094510923 0.0915731230217723 0.0910461437796957 3 3 + 1226743 1227248 1227031 1225928 1227442 + gene protein_coding_gene FALSE TRUE AT3G04550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28500.1); similar to Os10g0445600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064712.1); similar to hypothetical protein Npun02004305 [Nostoc punctiforme PCC 73102] (GB:ZP_00109308.1) 0.118204699628647 1.34734447509101 0.205255643488332 1 0.235108867549495 18.4994125214033 0.118204699628647 0.0554610875527284
AT4G35040_at 7.27680894592775 7.66901749176643 7.45799283889448 7.49762618058448 7.14664093348347 7.59356184271492 7.31497336569283 8.01815131928375 7.59725090685605 7.29216435371913 8.06264263806469 7.84987702781779 7.84465446846833 8.15248557320847 7.73082481295864 7.69372891171937 7.89962121408451 7.79277575358176 7.28857113167478 0.158259874015539 0.145945224827358 0.157696069787383 0.158911091648867 0.147009087142508 0.154102590581315 0.145924783320132 0.148950468164099 0.166531957290995 0.146850633171922 0.147441451428663 0.149681850752722 0.149699138997577 0.147162227129567 0.160872121560416 0.146555789365339 0.151085784254409 0.155808750243658 0.148362562340054 4 4 + 16681024 16681781 16681379.909 16680390 16682098 + gene protein_coding_gene FALSE TRUE AT4G35040.1 bZIP transcription factor family protein similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16770.1); similar to bZIP transcription factor bZIP122 [Glycine max] (GB:ABI34664.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.169940918744804 1.34689768576451 0.205395000950233 1 0.234592646319381 15.1323408301625 0.169940918744804 0.159510584527984
AT4G24330_at 9.16822092963504 9.41416413432314 9.2982739619843 9.28603293368747 8.97387223838376 8.70882373518702 9.05785946338907 9.22937468617436 9.00690759753888 8.85274560864054 8.87640134104106 9.18011102269016 8.61587472181746 9.05228275655388 8.76941944177628 8.80901884537582 8.51634861864317 8.57772622776963 8.82493359338578 0.116485048476945 0.115046935769979 0.117069820092966 0.11700987344487 0.118257532054976 0.124455460138062 0.116528809512503 0.114051891897807 0.117353973140554 0.11785207826063 0.121614615672559 0.115460382499490 0.120666403499389 0.114096911846540 0.121851316440211 0.116595483230175 0.131645484535527 0.114240677617286 0.121708206659970 4 4|0 -|/ 12603944 12605329 12604514.8 12603531 12606338 - gene protein_coding_gene FALSE TRUE AT4G24330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49945.1); similar to Os05g0432400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055631.1); similar to hypothetical protein LOC447812 [Danio rerio] (GB:NP_001004551.1); contains InterPro domain Protein of unknown function DUF1682; (InterPro:IPR012879) -0.12293424031653 -1.34687181336853 0.205403073179131 1 0.23456275692438 17.9893328295856 -0.12293424031653 0.0692880453384344
AT3G43720_at 9.2937779122 9.33267821348906 8.92091011584125 9.03185485535813 9.98346296253662 9.59095166956934 10.3545344075927 10.4609871758403 9.89195166973746 9.97048079716864 11.3100626253445 10.9499450043408 10.9853467651669 10.9137479828201 10.7925714868505 10.2626691542683 9.709144659861 10.4510267304707 9.97027539919604 0.0939725012051945 0.0902900605851664 0.0944858027316465 0.0948583562929607 0.0875491668123467 0.0969260493799024 0.0890935993793148 0.0882766220525731 0.104259409352089 0.0894438384007059 0.0875621660380015 0.0875491668123467 0.0882730670875041 0.0909623491184687 0.0886520267890975 0.0882951417726581 0.102382386858401 0.0913345889977538 0.0910137615527195 3 3|0 -|/ 15626591 15628050 15627661 15626373 15628136 - gene protein_coding_gene FALSE TRUE AT3G43720.1|AT3G43720.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein|lipid binding similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT2G27130.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE89509.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.124439409659399 1.346637865629 0.205476077201208 1 0.234292503996526 19.9291697923073 0.124439409659399 0.0732614764522602
AT3G13620_at 5.49604288035247 5.63424021993370 5.60654809636382 5.74319888273478 5.80823760046614 5.13091330461956 6.34396531628168 6.34707028350863 4.87752635183765 5.79457957570985 5.46629266793187 5.89532647544732 5.92387675730707 5.47738609788827 5.36169368216086 5.85219394822824 5.62919651617519 5.58553007412289 6.0113805500094 0.253242495930353 0.251143503976935 0.262424760958625 0.254795979529462 0.253300504648534 0.281411771447464 0.259864344656216 0.258496943104027 0.259736845380901 0.250524747163705 0.251926019992082 0.256243342136259 0.257595214870486 0.257851252683670 0.253140473231497 0.249264840769982 0.263464141864359 0.262252750856217 0.255752052277441 3 3 - 4451018 4451435 4451217.636 4450752 4452631 - gene protein_coding_gene FALSE TRUE AT3G13620.1 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT3G19553.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABE78683.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -0.147665167875481 -1.34616102344642 0.205624943752745 1 0.233741763415732 11.3688266663293 -0.147665167875481 0.121945199050679
AT2G05810_at 2.18400552110873 2.24013427966671 2.19958083335450 2.24076426380115 2.03935412693987 1.96621691729757 2.04763128873541 2.30894108083184 2.27027024383111 2.41271440350073 3.18305011599618 3.14627709367737 2.62815829177255 3.01888199195833 2.49719718199004 2.47746982369549 2.67830939854006 2.57918206219406 2.69798891422447 0.214870327613247 0.215721649214265 0.22905275876583 0.228535851570815 0.215251011039050 0.223554287621641 0.220821577248502 0.231025249192176 0.217033235087749 0.215935541906362 0.216995086527141 0.218922750854583 0.220093281900770 0.219256209548038 0.23514421272423 0.216035856689614 0.222308983822208 0.220756463158666 0.220360941741321 2 2 - 2215273 2215783 2215530.091 2214009 2217156 - gene protein_coding_gene FALSE TRUE AT2G05810.1|AT2G05810.2 armadillo/beta-catenin repeat family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G45720.2); similar to Armadillo [Medicago truncatula] (GB:ABE88966.1); similar to Os09g0135800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062641.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) 0.116021108610922 1.34598576887160 0.205679679398981 1 0.233539382695789 4.77152367171536 0.116021108610922 0.04847951862009
AT1G08130_at 5.28166289222073 4.58123030908638 4.460573892617 4.00125284162076 4.75065789374685 4.29198602803228 5.14876261931912 4.6101286553726 3.63978453298553 4.34266281516273 3.80327509303178 4.79678062330753 4.14285372594981 4.46106050980027 4.46654441467707 4.36630098639719 3.91634321137748 4.21007461322866 4.3765399895605 0.242732886077597 0.242732886077597 0.242732886077597 0.243028003782690 0.248030706746291 0.246039336821775 0.242732886077597 0.251277725678151 0.253027663231966 0.258364076665716 0.247026854708178 0.243102696170597 0.250863410537606 0.253909648222826 0.252199454569844 0.243105551916473 0.247283007390298 0.242732886077597 0.255012424802535 1 1 - 2543100 2543935 2543472.7 2542699 2547943 - gene protein_coding_gene FALSE TRUE AT1G08130.1 ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1); ATP binding / DNA ligase (ATP) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. Identical to DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]) [Arabidopsis Thaliana] (GB:Q42572;GB:Q9LMZ4;GB:Q9SGE5); similar to ATP dependent DNA ligase family protein [Arabidopsis thaliana] (TAIR:AT1G49250.1); similar to putative DNA ligase [Oryza sativa] (GB:AAL31067.1); similar to putative DNA ligase [Trifolium pratense] (GB:BAE71211.1); similar to DNA ligase I [Dictyostelium discoideum AX4] (GB:XP_644124.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain ATP dependent DNA ligase, central; (InterPro:IPR012310); contains InterPro domain ATP-dependent DNA ligase; (InterPro:IPR000977); contains InterPro domain ATP dependent DNA ligase, C-terminal; (InterPro:IPR012309); contains InterPro domain DNA ligase, N-terminal; (InterPro:IPR012308) -0.189293376838589 -1.34524842179375 0.205910100642109 1 0.23268810741648 8.83581518806404 -0.189293376838589 0.189736746610962
AT4G19480_at 0.794382830044545 0.656023346311008 0.837795438259031 0.64973885665415 0.901587222519781 0.851294101753833 0.691973686212785 0.91793842684693 0.545066193855193 0.773762855320085 0.448369261724589 0.668792769939561 0.802922527263828 1.21375595296217 0.925946512466415 0.83565672525284 1.29594505593901 1.08436950630223 0.833823899021157 0.190015826578863 0.192010035594767 0.190726225593657 0.199956679443812 0.187654642560109 0.189619261078762 0.187878416740049 0.199027695701189 0.197572276822075 0.200174512466762 0.190074117055007 0.189549724453794 0.192643894207543 0.192687864805161 0.193997565713865 0.187944214455290 0.18903699425986 0.193359376367088 0.191924476394968 4 4 - 10614827 10615303 10615064.909 10614791 10615327 - gene protein_coding_gene FALSE TRUE AT4G19480.1 unknown protein 0.118471569346034 1.34521207451340 0.205921464716626 1 0.232646152418373 1.60110212443200 0.118471569346034 0.0568973856185509
AT2G14800_at 1.69472682250291 1.88534264541981 2.13552953315949 1.52634997050100 2.31186746638688 2.05307664617781 1.30644220871760 1.48976278498353 1.93378774171097 2.11458772826601 2.21113784645887 1.58294705859905 2.00799957546843 1.81361067176351 2.02852542025225 1.83706550333419 2.19946176860372 2.27053282878398 2.28168350861952 0.250783530353749 0.243183064924032 0.244129307042487 0.255640112126186 0.240965284328840 0.237773624479678 0.250496653156329 0.255950769589336 0.263716365667473 0.240950258536969 0.250222898202847 0.24885664741334 0.236885065347304 0.243298560181517 0.251364814958963 0.238455223597222 0.245870605708444 0.241185057219139 0.236749715768907 2 2 + 6363558 6364036 6363721.833 6362264 6364061 + gene protein_coding_gene FALSE TRUE AT2G14800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44713.1) 0.148263856638084 1.34458601022222 0.206117287054189 1 0.231923620872844 3.85235213157621 0.148263856638084 0.123344795556136
AT3G02700_at 7.0843777650715 7.5393941933599 6.42082811928804 6.58308278214888 7.93315542795237 7.48939873503732 6.3414718528392 6.20751052854362 6.9412067982119 6.67248489844936 6.82865551816819 6.92085169055507 6.97485828363223 7.01235533626618 6.58252454862832 7.0695502789673 6.15328158133471 7.03007534339392 6.92629834178513 0.170124338407406 0.165476277070348 0.168179751636372 0.162626577107929 0.171185382576424 0.161142293271203 0.165094656508202 0.158714956792418 0.157753257153607 0.164110633946391 0.160208455759996 0.158004426221116 0.156967122431896 0.159201307129353 0.158210397184710 0.15895709008315 0.171052399834547 0.160757004820024 0.156967122431896 3 3 - 581770 582261 582045.727 581548 582956 - gene protein_coding_gene FALSE TRUE AT3G02700.1 NC domain-containing protein similar to NC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16360.1); similar to Os05g0310600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055158.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90086.1); contains InterPro domain NC; (InterPro:IPR007053) 0.144141703811271 1.34408518805540 0.206274046931301 1 0.231345796806179 13.7839936349136 0.144141703811271 0.115860344860327
AT1G30795_at 0.656084591117825 0.90687341139874 0.697660447052288 0.532630094334176 0.631446606748187 0.722841167611189 0.856591923641636 0.504276683838885 0.789825249820477 0.845831712466096 0.686121782750351 0.698524509403794 1.07061715354824 1.08846196820761 1.06692968399041 1.13908374202351 1.40929563665048 1.18797254230072 0.474349655735205 0.174208122050861 0.166749235238021 0.179447124292391 0.169544629684586 0.174332211083553 0.171577912863470 0.174370150709882 0.171593406160000 0.174055409939264 0.175109549498621 0.172552535030609 0.168390798114557 0.177394417751768 0.171232255142191 0.177290110051980 0.176302558059711 0.172650064776255 0.167557653161946 0.166871325084787 1 1 + 10935832 10936086 10935928.455 10935735 10936330 + gene protein_coding_gene FALSE TRUE AT1G30795.1 hydroxyproline-rich glycoprotein family protein similar to MEE26 (maternal effect embryo arrest 26) [Arabidopsis thaliana] (TAIR:AT2G34870.1); similar to proline-rich protein [Brassica napus] (GB:AAT75332.1); contains domain COLLAGEN TYPE IV ALPHA CHAIN (PTHR10499:SF5); contains domain COLLAGEN ALPHA CHAIN (PTHR10499) 0.127614132227992 1.34391543542381 0.206327202793460 1 0.231149978315535 1.56190632406786 0.127614132227992 0.0816497219128129
AT1G80230_at 7.36259805451425 7.54712686496015 7.33378600606861 7.41767624554096 7.31685915264496 6.89408430424792 7.31487331659323 7.55632763537333 6.88358759745028 6.83679971277795 7.33522770845473 7.64099222218818 7.28234414841943 7.21578804053283 7.18211636205054 7.3463598693419 7.12242724051843 6.83886175793343 6.61109144286493 0.149600810347691 0.141626546279216 0.145002963264606 0.146479427402652 0.142350966580838 0.154762151841442 0.149876238983392 0.141052660256547 0.147154252467838 0.145183540589505 0.141828283161259 0.143388045082873 0.146508637513282 0.148243186504577 0.143670433831784 0.146185229787015 0.158513681095597 0.145875016048135 0.150478566977258 1 1|0 -|/ 30174688 30175725 30175060.778 30174348 30175993 - gene protein_coding_gene FALSE TRUE AT1G80230.1 cytochrome c oxidase family protein similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT3G15640.1); similar to cytochrome c oxidase subunit Vb [Pisum sativum] (GB:BAF30483.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) 0.131862521790458 1.34385564568123 0.206345927890010 1 0.231081011810240 14.3542535740151 0.131862521790458 0.09126516667004
AT3G28520_at 2.08163090631383 2.01221798434326 1.93115594319776 2.45358235733226 2.30690136511656 2.21762392661266 2.18729483028196 2.16434506244222 1.87172293277275 2.14896591244111 2.1914260938874 1.99761715200651 2.47565992760089 2.62964830703563 2.24297594954228 1.89723758451205 2.27260834163435 2.05055679410669 2.19151943068933 0.171468366625854 0.172762527404472 0.185617126416938 0.176246360632256 0.170270728656371 0.169921456074416 0.170604059213579 0.178567231639596 0.190385195104927 0.1778945701589 0.175756054763879 0.175269899375232 0.175778534962071 0.175748390272888 0.177730682289123 0.172394522038956 0.184952686702912 0.182070883331669 0.179117143844736 3 3 + 10690417 10690969 10690698 10689560 10690996 + gene protein_coding_gene FALSE TRUE AT3G28520.1 AAA-type ATPase family protein similar to ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT3G28540.2); similar to AAA ATPase [Medicago truncatula] (GB:ABE78540.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.132461939521245 1.34374270572663 0.206381302543444 1 0.2309507431811 4.31457022733429 0.132461939521245 0.0925874255363967
AT3G03190_at 7.8358139709708 7.89924232528357 6.8789698419649 6.60833508119195 7.77817622085522 7.77044633858021 8.25074437257632 8.0904365341006 4.66219506874371 8.13267210116986 7.80398956987001 7.54331134250548 7.9806984349454 7.93912801204472 6.60187587216069 7.48772750464212 8.09467944393472 7.78825596627762 7.18233465701542 0.180729270539652 0.178033257433916 0.179843957129224 0.180425748219642 0.175658108251061 0.183448428325602 0.176356316664533 0.180664490652025 0.199008882708565 0.181217352164953 0.194063663696545 0.178538285224076 0.179265679294707 0.179089342692745 0.18403041809295 0.177587429578098 0.178061749056218 0.183110204139720 0.177311053061968 3 3 + 735483 735830 735633.273 735035 735994 + gene protein_coding_gene FALSE TRUE AT3G03190.1 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Glutathione S-transferase (EC 2.5.1.18) (GST class-phi) [Arabidopsis Thaliana] (GB:Q96324); similar to ATGSTF12 (GLUTATHIONE S-TRANSFERASE 26), glutathione transferase [Arabidopsis thaliana] (TAIR:AT5G17220.1); similar to glutathione S-transferase [Citrus sinensis] (GB:ABA42223.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.117906781284923 1.34364573811089 0.206411678408979 1 0.230838903610249 14.7960333576607 0.117906781284923 0.0555461488478392
AT1G01620_at 10.7218033892183 10.7443760149280 10.6236692065795 10.6492280926166 11.2677292414745 11.0391812674669 11.6723610265666 11.6390605047331 11.5333382751547 11.3203546872920 12.5136299609481 12.1053388969954 12.1035233260463 11.9761525597615 12.1808977172184 11.8424452869887 11.4802021818749 11.9101275532836 11.6077717543173 0.0793475930674615 0.078023654644935 0.08174062108334 0.0822649396082388 0.0787371684724566 0.0784586121089823 0.0778870425650978 0.0797205524457845 0.084734068882133 0.0800611803981006 0.078409229990396 0.0777065064124553 0.0790369982870929 0.0810118520595925 0.0796285686609386 0.0777065064124553 0.0807146134532209 0.0801640086307008 0.0787486875598682 1 1|0 -|/ 225987 226633 226376.4 225665 227302 - gene protein_coding_gene FALSE TRUE AT1G01620.1|AT1G01620.2 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3); water channel|PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. Identical to Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c) (PIP1c) (Transmembrane protein B) (TMP-B) (PIP1.3) [Arabidopsis Thaliana] (GB:Q08733;GB:Q8W4E5); similar to TMP-C (plasma membrane intrinsic protein 1,4), water channel [Arabidopsis thaliana] (TAIR:AT4G00430.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.113718248987236 1.34334327258642 0.206506451919288 1 0.230490084713244 22.7952733884368 0.113718248987236 0.0404021978355804
AT1G09450_at 0.61686316002089 0.825859334560112 0.747791693890041 0.82502634969214 0.351580894209064 0.772238972216719 0.553850044353325 1.25760128783458 0.824883348920281 1.01812748338312 0.95501675027694 0.700653034924111 1.02543623867078 0.966278951937004 0.850960248273115 1.10923348546788 0.9552829700896 0.71423704410396 1.43866731500211 0.187457618582115 0.187382846516194 0.183908539975941 0.183908539975941 0.188821263713429 0.184914650287733 0.193003829197288 0.183908539975941 0.192400878862531 0.188363435799880 0.187288633448511 0.185408751722470 0.192888210350484 0.189221626468219 0.187462074289017 0.190882270064671 0.186117413706935 0.193346080488098 0.187030237259323 1 0|1 /|+ 3051807 3052806 3052225 3049026 3053114 + gene protein_coding_gene FALSE TRUE AT1G09450.1 haspin-related similar to haploid germ cell-specific nuclear protein kinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16406.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.161819677245408 -1.34322891790382 0.206542292820153 1 0.230358219126459 1.74561649521532 -0.161819677245408 0.147031668921819
AT4G00080_at 0.517902844890247 0.55287320692609 1.15081816389833 0.384170692414336 0.937484748487296 0.503948682249501 0.798512202669927 0.4693320502944 1.01772135814035 1.00925627644180 1.12277743898959 0.742322963333923 1.22870028817826 0.96075957301168 0.965478861202059 1.03899845368020 1.30356803100880 1.02636286896098 0.568008482773216 0.228900520399124 0.232671172892869 0.232710230165339 0.243968574654785 0.228900520399124 0.233038732138126 0.237229045354668 0.231092460503433 0.231841944568643 0.230154014928893 0.22943442891823 0.228900520399124 0.232377499655785 0.229308691519660 0.232211326429037 0.239811627579282 0.233077773921564 0.246201209350439 0.233569545185975 4 4 + 33043 33506 33257.091 32893 33713 + gene protein_coding_gene FALSE TRUE AT4G00080.1 UNE11 (unfertilized embryo sac 11); pectinesterase inhibitor similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative 21kD protein precursor [Medicago sativa subsp. x varia] (GB:CAA72315.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.171538091455549 1.34308339752858 0.206587909089501 1 0.23019042673619 1.62118854010250 0.171538091455549 0.162826356574517
AT1G18660_at 9.02369919712825 8.9496271620327 9.4206223751416 9.3129710516508 9.49577690524736 9.26047097493944 9.7568964411652 9.63926115687826 8.54108414975054 9.12564247178639 9.13490112109111 8.8120155177961 9.29052580888476 9.19926780463508 8.73468551728072 9.36559477232128 9.37606376734118 9.201227171569 9.14290034453438 0.116369809542471 0.113431143098160 0.115967295216222 0.115841783079364 0.115354080638375 0.118517926850046 0.116819551687810 0.121268695442244 0.132389634383836 0.117292985471176 0.115283734236571 0.115427675291515 0.114564671543636 0.117215068115733 0.122913417545049 0.114153506307354 0.117800775848091 0.126959898899550 0.119405065563412 1 1|0 +|/ 6423444 6425506 6424566.889 6421109 6425872 + gene protein_coding_gene FALSE TRUE AT1G18660.1|AT1G18660.2|AT1G18660.3|AT1G18660.4 zinc finger (C3HC4-type RING finger) family protein similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to unnamed protein product [Macaca fascicularis] (GB:BAE00874.1); similar to PREDICTED: LON peptidase N-terminal domain and ring finger 1 [Pan troglodytes] (GB:XP_519609.2); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to PREDICTED: similar to CG32369-PB, isoform B [Mus musculus] (GB:XP_910612.2); similar to PREDICTED: similar to CG32369-PB, isoform B [Mus musculus] (GB:XP_146279.6); similar to PREDICTED: LON peptidase N-terminal domain and ring finger 1 [Pan troglodytes] (GB:XP_519609.2); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.116416100267418 1.34282675637816 0.206668378738538 1 0.229894537095088 18.3953294115923 0.116416100267418 0.0508328492967495
AT4G02485_at 2.85842046236543 2.51166964104383 2.64823978662524 2.50747748565766 2.80313016217305 2.04479128992237 3.09069252393272 2.81683874517647 2.00148702965049 2.28818074532723 2.32839106098779 2.30811331541378 1.98371188613055 2.36494417514132 2.49247978337773 2.18880892072043 1.77146546625643 2.11220650018939 2.33117711854293 0.217071860286754 0.221302704934338 0.231246961315586 0.217071860286754 0.219891458501134 0.227549728367375 0.221755022943516 0.227842637483187 0.253413985529555 0.22293450974953 0.224235054425395 0.217071860286754 0.220065381454303 0.219336914023736 0.217283608000068 0.217071860286754 0.230637748542779 0.218906356493848 0.219033041590277 4 4|0 +|/ 1092785 1094289 1093661.6 1092681 1094597 + gene protein_coding_gene FALSE TRUE AT4G02485.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G31600.3); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52287.1); similar to Os11g0657200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068395.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.165839410674035 -1.34228300147313 0.206838958540878 1 0.229267754275634 4.86051423029579 -0.165839410674035 0.153826410465844
AT3G18970_at 1.37793649498128 1.36655648808347 1.43744100111531 0.955694979585285 1.23696682039290 1.69035002363867 1.53003025816799 1.77156938389997 1.83378680098669 1.39745430294417 1.8593787948248 1.56576562243695 1.30600447976648 1.38792160564245 2.18489102181352 1.54460560998119 1.68953108675902 1.64243781360165 2.05034161774332 0.209531518506289 0.214883911663496 0.218787904782275 0.209531518506289 0.216587826598950 0.209531518506289 0.209531518506289 0.213912888005668 0.222025609646253 0.213463695616307 0.237978744397150 0.222220211824113 0.233597542353473 0.215130192474895 0.209926264353053 0.209531518506289 0.212497157074047 0.216598837341190 0.215894545404276 3 3 - 6543864 6544223 6544070.889 6543324 6545438 - gene protein_coding_gene FALSE TRUE AT3G18970.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G59200.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85819.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.147185259819138 -1.34205839262788 0.206909453989627 1 0.229008900369367 3.12486547035544 -0.147185259819138 0.121890719485288
AT1G04190_at 7.16360850452891 7.13458005273465 7.02549115932484 6.84567581419856 6.46811409499111 6.96017911640641 7.07752780733187 7.3895058572156 5.82073785702528 5.54529447214001 5.63699821731063 6.48471080059539 5.49268902369142 6.01391074308679 6.21675206468998 5.65801404707633 6.08849945485999 5.8707953821154 6.16463278080738 0.195682447980913 0.188903192969958 0.187523172833391 0.192735970886576 0.198965344273508 0.195858982345112 0.191252923668070 0.196766506753903 0.204163012122239 0.192373988843931 0.191244004881839 0.190853118848584 0.192808503231914 0.187523172833391 0.192415713573910 0.189170301794346 0.204818411483291 0.198027759118669 0.192509975455773 1 1|0 -|/ 1106634 1107313 1106976.889 1106427 1108714 - gene protein_coding_gene FALSE TRUE AT1G04190.1 tetratricopeptide repeat (TPR)-containing protein similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to stress-inducible protein STI1-like [Trypanosoma cruzi strain CL Brener] (GB:XP_804660.1); similar to Os12g0604800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067220.1); similar to stress-inducible protein STI1-like [Trypanosoma cruzi strain CL Brener] (GB:XP_811823.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.138599664600924 -1.34187180133664 0.206968032437306 1 0.228793883180128 12.8962609275094 -0.138599664600924 0.105639135272870
AT1G32030_at 2.1131323070989 1.74901698813734 2.43587176921034 2.25317899371859 1.92401229768886 1.89058286524074 1.93928523881882 1.74379537111157 2.48486354251614 2.33269592117304 2.59775914241985 2.19286884358201 2.50961689151734 2.04083848576018 2.3177426076346 2.16870896716051 2.85507058644116 1.99308573026090 2.14835671918725 0.201767760392726 0.202665366865849 0.207389273141918 0.201537015220756 0.205946824805423 0.204251607228712 0.202915061443346 0.198469814908752 0.206748851837611 0.202669324710095 0.198749975898779 0.211244102484453 0.204844743303764 0.21159228660007 0.200625405413474 0.201111652931861 0.208624495285984 0.205538340809331 0.203971538531783 1 1 + 11515014 11515520 11515254.727 11514574 11515575 + gene protein_coding_gene FALSE TRUE AT1G32030.1 DNA binding similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G24050.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Protein of unknown function DUF313; (InterPro:IPR005508) 0.126046675530618 1.34166914618696 0.207031669539077 1 0.228560378363261 4.33432621278108 0.126046675530618 0.078409315272678
ATMG00120_at 3.38786622412703 5.22894721419341 4.18161202461051 4.64154485601376 2.91168513004219 3.7973932883572 3.85284951854151 4.58034615326268 4.87911855037853 4.79066425496523 4.56779440803509 5.09182080148668 4.97471630832678 5.26666320738140 3.34906735590087 4.5676498521778 3.84196971050862 4.82569045809819 4.85637101311079 0.260574369851955 0.258533586189502 0.259937881792910 0.268776606329706 0.270772333796946 0.254506827837917 0.257920153653279 0.257356871650273 0.258860237774049 0.254506827837917 0.269278894004818 0.254506827837917 0.265288516886439 0.254506827837917 0.258856652571333 0.255426376642944 0.260029914373661 0.254506827837917 0.254506827837917 M M - 32066 32371 32207.875 32041 32472 - gene protein_coding_gene FALSE TRUE ATMG00120.1 Identical to Hypothetical mitochondrial protein AtMg00120 (ORF143) [Arabidopsis Thaliana] (GB:P93281) -0.330411606427001 -1.34138380192568 0.207121299889365 1 0.228231638286907 8.77414194392234 -0.330411606427001 0.383652772499791
AT1G73840_at 5.7894773242273 5.74630832525983 5.58701689154297 5.73660039745334 5.80815427992801 5.58588429669691 5.57781458510721 5.62890015700132 5.26709690074203 5.32908272644914 4.84486130803332 5.14117510147752 5.51923420907837 5.12519660937444 5.23918323561647 5.57278555643336 5.59164836175654 4.67430367026233 5.71832231184872 0.178670367412512 0.175395950377364 0.182607319619891 0.177562015947697 0.173605616966252 0.186040896870237 0.176333819769125 0.18444364361697 0.176265461407923 0.176787441531511 0.188007423965253 0.178386549023751 0.175555308473827 0.175434975866438 0.173605616966252 0.176677259741205 0.188981326801969 0.175380389693248 0.180454176195502 1 1|0 -|/ 27767641 27768888 27768253.1 27767346 27770025 - gene protein_coding_gene FALSE TRUE AT1G73840.1 ESP1 (ENHANCED SILENCING PHENOTYPE 1) Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals. In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3'end formation along with other factors. similar to cleavage stimulation factor, putative [Arabidopsis thaliana] (TAIR:AT1G71800.1); similar to proline-rich protein precursor [Glycine max] (GB:AAC34889.1); contains domain RNA-BINDING PROTEIN (PTHR23139); contains domain PROLINE-RICH PROTEIN (PTHR23139:SF11) -0.115414969001432 -1.34116730177116 0.20718932685889 1 0.227982244597723 11.0083774419108 -0.115414969001432 0.0477870545405026
AT3G50250_at 5.68884323123638 5.21099612204284 5.3672976101226 4.72033150848292 4.98165740461472 5.40162579824124 4.95380602187499 4.56506414898173 6.6763167456768 6.139009925523 7.33056175591227 5.64206211035581 6.55219415236478 6.5924268696091 7.11445491697809 6.31759327181721 6.61884600193155 6.37774672139858 5.87051401752901 0.332895165817498 0.315672859652737 0.300246181859611 0.300246181859611 0.316399080091199 0.300246181859611 0.300246181859611 0.311751782040107 0.308249053963664 0.300246181859611 0.306578234075391 0.316837944349225 0.300246181859611 0.301951480965575 0.309174007941791 0.300246181859611 0.320173762261124 0.314753241973212 0.310361937822281 3 3 - 18641105 18641377 18641196.5 18641014 18641460 - gene protein_coding_gene FALSE TRUE AT3G50250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19270.1) 0.176336430733853 1.34091887727844 0.207267407648449 1 0.227696110560590 11.5096273746774 0.176336430733853 0.170824913074582
AT1G05460_at 5.22583646071304 4.68563934877022 4.82771541418683 4.49236273814578 4.79186883260696 4.64991189670854 4.91210274979801 4.54342533995245 6.11169865207921 5.89568578471997 5.89665825675344 6.24703086898967 5.64871793947666 5.72876923367925 5.79681478286642 5.99361096784652 5.9815664249358 5.78237587661315 6.09985620605323 0.208926375895973 0.200772291638854 0.207841326604166 0.204094923696970 0.202876100225755 0.201759725868602 0.198931171663476 0.198495811528675 0.203540019656277 0.205997157034663 0.210414937157527 0.202700659298819 0.219617772925338 0.209003912829443 0.202399061834384 0.198495811528675 0.201415143180453 0.198909284219030 0.204874068122026 1 1 - 1601434 1601921 1601684.455 1601147 1605026 - gene protein_coding_gene FALSE TRUE AT1G05460.1 SDE3 (SILENCING DEFECTIVE) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. Identical to Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing defective protein 3) (SDE3) [Arabidopsis Thaliana] (GB:Q8GYD9;GB:Q94KS1;GB:Q9LR48); similar to LBA1/UPF1 (LOW-LEVEL BETA-AMYLASE 1), RNA helicase [Arabidopsis thaliana] (TAIR:AT5G47010.1); similar to Os03g0160400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049037.1); similar to Mov10, Moloney leukemia virus 10, homolog [Gallus gallus] (GB:NP_001012861.1); similar to hypothetical protein LOC523206 [Bos taurus] (GB:NP_001069307.1); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain MOLONEY LEUKEMIA VIRUS 10 HOMOLOG MOV-10 (PTHR10887:SF17); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.151295045726045 -1.34067780551523 0.207343200751483 1 0.227418480463906 10.7262028100332 -0.151295045726045 0.129542616102475
AT2G18930_at 1.99835692344149 2.26418622235616 2.96460822564675 2.47947024559808 2.14456383608767 2.83807126895477 2.28040072133060 2.1987721675911 2.68980437853721 2.24272639380606 2.20019565259467 2.36361407154052 2.38562698235045 1.83068206668178 2.16485797566308 2.11115720974244 2.90439699146261 2.14297563324868 2.12510201984625 0.194096740906794 0.196590678843369 0.189373769078759 0.202997016364178 0.193657709143408 0.197999648774988 0.191796139242891 0.189373769078759 0.198650553977026 0.192570833622746 0.189373769078759 0.19202381637062 0.194565715523476 0.196537691203216 0.190640457557874 0.193760338065859 0.208034687698641 0.191608087541876 0.197258128828372 2 2|0 +|/ 8205860 8206130 8205983.4 8205860 8206154 + gene protein_coding_gene FALSE TRUE AT2G18930.1 unknown protein 0.165821722119665 1.34044138449492 0.207417553957170 1 0.227146239981401 4.70379499486268 0.165821722119665 0.154168285561818
AT1G35030_at 1.28732060090434 1.33416797489954 1.96680271990097 2.06083836286313 1.33656643413176 1.80488329288851 1.67730806653627 1.70852047584720 1.89219357366986 1.93511487860757 1.49133226820085 1.02777057873698 1.55384429433690 1.15454265223696 1.10460592350403 1.23966228006797 1.71319782312062 1.60519982831304 1.89557484610956 0.252665968852166 0.23579801503508 0.23863144695554 0.235299308588753 0.244773391725747 0.237846042016005 0.241180137374068 0.235299308588753 0.240251505437082 0.24181372007343 0.235299308588753 0.241588129211592 0.239324049518176 0.242371709938248 0.243171158674484 0.235299308588753 0.272071910262345 0.241878896637378 0.238328051223597 1 0|1 /|+ 12808549 12809433 12809251.143 12808224 12809459 + gene protein_coding_gene FALSE TRUE AT1G35030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34910.1) -0.127957443582539 -1.34041165093433 0.207426906573786 1 0.227112003930425 3.2814996020933 -0.127957443582539 0.083234125469964
AT2G28310_at 6.55525852912556 6.58197609778952 6.19627080644672 6.37583267115455 6.60410015770509 6.34839807780724 6.68454492817796 7.26433517576968 6.1344333456207 6.79344028731121 6.41303053784285 7.06405142913446 7.06433731106636 6.97868113066073 6.21646132125474 6.79037387711366 6.31129230490104 6.5600149480689 6.78199749345236 0.183626375633420 0.183600520658149 0.187312647031892 0.188953499010772 0.192308597801396 0.185679967255443 0.184790505428277 0.192238212222417 0.187830631159623 0.186768816787463 0.189974262531032 0.184966764231041 0.186128145066455 0.198924695279653 0.198015307432922 0.182420489121598 0.187132935431165 0.186667703967566 0.181730996695694 2 2|0 +|/ 12093797 12094910 12094287.1 12092455 12095137 + gene protein_coding_gene FALSE TRUE AT2G28310.1|AT2G28310.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08040.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.142777469530013 -1.34020399668453 0.207492233434615 1 0.226872919706754 13.1987082553138 -0.142777469530013 0.114071325353681
AT4G27730_at 2.04642280970566 1.97084072598722 1.08567920581034 0.832939867856581 1.75799919529158 1.75043725711659 1.53304223511421 2.09298934034033 2.67300218252629 2.06631886396739 2.50508014687659 2.42150880523837 2.94566513555928 2.68616810577171 2.27867816970153 2.39211258443427 2.14121638804362 2.71368951788754 1.96454314265449 0.208463779281494 0.201063737639917 0.201063737639917 0.205190426578624 0.209321925962209 0.201551529053334 0.203268767662057 0.203226527854797 0.204113811254892 0.206287860288916 0.211497934199287 0.207336626928076 0.210744975323957 0.201063737639917 0.201354682684807 0.201063737639917 0.214962226605860 0.202289036718799 0.208436197573178 4 4 - 13834080 13834555 13834378.818 13833815 13836584 - gene protein_coding_gene FALSE TRUE AT4G27730.1 ATOPT6 (oligopeptide transporter 6); oligopeptide transporter oligopeptide transporter Identical to Oligopeptide transporter 6 (AtOPT6) (OPT6) [Arabidopsis Thaliana] (GB:Q9T095); similar to ATOPT7 (oligopeptide transporter 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G10770.1); similar to ATOPT8 (oligopeptide transporter 8), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53520.1); similar to ATOPT9 (oligopeptide transporter 9), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53510.1); similar to isp4 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89477.1); similar to Oligopeptide transporter OPT superfamily [Medicago truncatula] (GB:ABE92893.1); similar to Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily [Medicago truncatula] (GB:ABE84685.1); contains InterPro domain Tetrapeptide transporter, OPT1/isp4; (InterPro:IPR004648); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.139083217980846 -1.33928059364609 0.207782937254874 1 0.225810063877608 4.00636195618873 -0.139083217980846 0.107124578600868
AT1G11800_at 4.90098004599639 5.10937903672628 5.34324473488669 5.10435915750138 5.20621160321966 5.66778024152722 5.27869619445938 5.32604072216375 4.56972420086023 4.32834110448483 4.67054447889779 4.90516078141177 4.16959690734680 4.25305770619336 4.3206120604253 4.51235047150235 4.67451111955561 4.41330128026123 4.29659076720231 0.221202650046352 0.219077014831854 0.219077014831854 0.227106442822613 0.219077014831854 0.226497243131102 0.237704334483233 0.241838446388356 0.244743116545405 0.223646308514123 0.224841183929285 0.223166247017425 0.231636700852673 0.219077014831854 0.239412720024164 0.219077014831854 0.234325923127378 0.235192305733256 0.222107439466915 1 1 - 3985535 3985980 3985771.909 3985224 3987289 - gene protein_coding_gene FALSE TRUE AT1G11800.1 endonuclease/exonuclease/phosphatase family protein similar to Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE89108.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.13414904714872 1.33864251333801 0.207984013361410 1 0.225075917133473 9.68614173783429 0.13414904714872 0.0972474167102107
AT1G78090_at 2.64958182682254 2.42094995536346 2.92437855764146 2.67160938701186 1.81807409726856 2.21646714534577 2.46203130026481 2.58557711470363 2.82836067083584 3.23578320400875 3.49943142536652 3.41719216623409 3.47789248512270 3.23964695633936 3.3587098152577 3.39916440291900 3.43332500780929 4.47130002929120 3.3879132758689 0.203847909889569 0.199767837467613 0.202790221250473 0.199490750306084 0.200971466818715 0.197369245864088 0.19885806203112 0.192997916300302 0.194967220108864 0.199796602206565 0.202049780407036 0.194499063178069 0.196844408474755 0.195419559259502 0.194049653147728 0.195317296556601 0.198118344460622 0.208494732923313 0.196398874251764 1 1|0 +|/ 29379672 29381003 29380286.6 29378784 29381397 + gene protein_coding_gene FALSE TRUE AT1G78090.1 ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE) homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G35910.1); similar to Os02g0753000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048143.1); similar to Os08g0409100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061780.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) 0.132247158333144 1.3386093365561 0.207994472654203 1 0.225037752044087 5.81246792452625 0.132247158333144 0.0932161440973689
AT4G34140_at 5.40479676914807 5.54302361179493 5.84598877168212 5.24110702194259 6.57050388070107 5.38577086186669 6.09449060006532 5.6573333563565 4.62801212653771 5.87211671070201 5.03385506853458 4.89136519141887 4.77825401746363 5.15621714427106 4.46010216714531 5.04745320539498 4.85137237394114 3.98418943561238 5.43603928068656 0.245924032406321 0.240436649553562 0.247464943640461 0.237133269604428 0.249648707542115 0.266556994581632 0.248086780188322 0.24080405089264 0.258563288637126 0.237133269604428 0.240303997139667 0.237133269604428 0.239438294980969 0.253676178672597 0.241259633094303 0.243392694559541 0.249424671050337 0.247644775781952 0.242606280224928 4 4 + 16352499 16353726 16352830.364 16350736 16354258 + gene protein_coding_gene FALSE TRUE AT4G34140.1 D111/G-patch domain-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G54230.1); similar to D111/G-patch [Medicago truncatula] (GB:ABE79690.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.225386707064553 -1.3383499808597 0.208076251988545 1 0.224739423438628 10.7615804165854 -0.225386707064553 0.243490271813584
AT3G09080_at 1.31015407007743 1.69583680475111 1.85777097991076 1.53922243517987 1.43622729087095 1.37091902947813 2.08427014820804 1.69864185659324 1.79579148397419 2.22338421742585 1.67787038688786 2.18214817483250 1.78433989637945 1.60328445109425 2.20973803796487 2.02787091320322 1.52165206138288 1.92346598931508 1.98319900046450 0.218338779462662 0.210832968155325 0.213596489649202 0.213932639266905 0.213784492052171 0.219993661726623 0.210286762354758 0.210377465902576 0.21785162153437 0.211842902875988 0.212428828666000 0.215733114751432 0.220608310879462 0.215890696881524 0.210380815286785 0.210286762354758 0.213269330455395 0.215274265484353 0.215092461033314 3 3 - 2776397 2777112 2776681.818 2776264 2781790 - gene protein_coding_gene FALSE TRUE AT3G09080.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to PREDICTED: similar to CG7337-PA [Apis mellifera] (GB:XP_393538.3); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.140343057226597 -1.33781702115013 0.208244386954454 1 0.224126502732702 3.55767422996904 -0.140343057226597 0.109886127114424
AT2G27990_at 2.75616864263049 3.07054737275887 2.82771495419604 3.16579505777238 2.24878080156209 2.64740558870306 2.57138694854387 2.94395984021294 2.46977038480481 2.63884400864587 2.00426856766826 2.37263435903208 2.50457393725508 2.44036744813760 2.52876785457769 2.42217030936098 2.42201686532712 3.11908964631884 2.86844319917482 0.239034917133898 0.24361757185444 0.235783137052814 0.239742004925813 0.239272024962443 0.235673523498183 0.244520978192047 0.239875498172799 0.235673523498183 0.239764061931321 0.239092529030882 0.240281172381087 0.239059030453065 0.237052221746022 0.24590789831494 0.237888513835409 0.248783537848807 0.243884600346394 0.252274911693269 2 2|0 -|/ 11928768 11929594 11929218.444 11928510 11931775 - gene protein_coding_gene FALSE TRUE AT2G27990.1 BLH8 (BEL1-LIKE HOMEODOMAIN 8); DNA binding / transcription factor similar to LSN (LARSON, VAAMANA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02030.1); similar to POX; Homeodomain-related [Medicago truncatula] (GB:ABE84934.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) -0.147687337280138 -1.33764423389165 0.208298920988350 1 0.223927828225161 5.34684756129824 -0.147687337280138 0.123688019659442
AT2G03380_at 1.79560981931364 1.77293795787894 1.57022343785882 2.02772828349402 1.75422556290097 1.69339349865878 1.23214775552860 0.858829316971006 1.98571791948578 1.72465342444831 1.4591751826676 1.36982282926272 2.00406246641468 1.30672189162208 1.67051928723891 1.55279431381292 1.95404210976349 1.71421323823617 1.39547258030221 0.204977880659503 0.220692363056123 0.210491797195383 0.221456250252291 0.214553629148805 0.213339725227774 0.209853882844303 0.211960970855576 0.227380189467015 0.210110454268913 0.217916832686455 0.204977880659503 0.218750753633066 0.206736775437881 0.214021040171466 0.204977880659503 0.225221740177828 0.208729911800651 0.220004423381197 2 2 + 1029762 1030325 1030027.636 1028289 1030358 + gene protein_coding_gene FALSE TRUE AT2G03380.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to Os06g0185700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057004.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.136741211718495 1.33757424177557 0.208321014826094 1 0.223847354852426 3.25357039888698 0.136741211718495 0.102802611953684
AT1G79660_at 7.36027402348671 7.70053759288876 6.67047099794479 7.25278723035239 8.11769545162586 7.84577084039785 7.26893103452518 7.563977224827 7.5253051437452 6.47838622899143 6.96387939561681 6.38561920121268 7.20812810141527 7.25334671658225 5.72229401397132 6.9890360704377 6.27970240206033 6.78542506843942 7.01308530430365 0.226330185340189 0.219875855023713 0.236750093181618 0.236471772251896 0.21986530227303 0.239575319445282 0.222795639266392 0.219207137857589 0.230601147923901 0.227951717306210 0.224647145860628 0.216467206341507 0.22564112090146 0.231553890428424 0.238807959278777 0.218561757049965 0.237007456557375 0.227379068127660 0.223247489663991 1 1 + 29981205 29981419 29981294.818 29980756 29981666 + gene protein_coding_gene FALSE TRUE AT1G79660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16170.1); similar to Os08g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061402.1) -0.154456096657406 -1.33698170536863 0.208508133665953 1 0.223166203766304 14.3245660979546 -0.154456096657406 0.135808415796020
AT1G61080_at 0.77607529782013 0.882495451749687 1.15537539191311 1.02263790777417 0.764218984520102 1.2976175167507 0.747453984904736 0.97428026639671 1.00984475804394 0.717982439033769 1.2120563480325 1.00012345777512 0.629997044617811 1.01186683878771 0.744404846079165 1.19924118604958 1.21147562589909 1.03861001351002 1.10950764840241 0.203091956005976 0.210308488517746 0.203091956005976 0.210943981180760 0.206138329829446 0.203091956005976 0.203091956005976 0.203091956005976 0.214387406815580 0.210986483618161 0.207481824078310 0.206670408172689 0.219346952050825 0.219287916961413 0.208817010781253 0.206382866609113 0.213386619731842 0.208288031780423 0.205667892458277 1 1|0 -|/ 22496905 22497702 22497257.1 22496859 22500684 - gene protein_coding_gene FALSE TRUE AT1G61080.1 proline-rich family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G11070.1); similar to pherophorin-dz1 protein [Volvox carteri f. nagariensis] (GB:CAD22154.1); contains InterPro domain Atrophin; (InterPro:IPR002951) 0.137539919144436 1.33695184723111 0.20851756633636 1 0.223131885846097 1.92839445118896 0.137539919144436 0.104538288162663
AT4G21800_at 7.42236181450092 7.60912335159874 7.69090833866316 7.55924298745905 7.37478050544536 6.95958899959188 7.19243568571824 6.98522849131118 5.2076906299986 6.0663466842443 5.79093628923855 5.84894056636679 5.96442081234534 6.26347973944747 5.83067044970353 6.21984993851172 5.84350782539447 6.23711903091088 6.22495168863215 0.245047120171442 0.238635733385379 0.241461021835220 0.239757122585062 0.245178989692792 0.253046313102109 0.237017923690399 0.240955926612020 0.254986071646606 0.250619502795869 0.241532815320685 0.241422674564636 0.240344243694597 0.24647564867694 0.241929348135653 0.237715392719092 0.254881958736062 0.248555476517879 0.242580946218257 4 4 + 11574227 11574962 11574509.727 11572801 11575157 + gene protein_coding_gene FALSE TRUE AT4G21800.1|AT4G21800.2 ATP-binding family protein similar to EMB1705 (EMBRYO DEFECTIVE 1705), ATP binding [Arabidopsis thaliana] (TAIR:AT5G22370.1); similar to ATP-binding family protein [Arabidopsis thaliana] (TAIR:AT4G12790.4); similar to Ras GTPase; AAA ATPase; Protein of unknown function, ATP binding [Medicago truncatula] (GB:ABE85331.1); similar to Os03g0312600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049925.1); contains InterPro domain Protein of unknown function, ATP binding; (InterPro:IPR004130) 0.130356059602878 1.33662218986492 0.208621733925645 1 0.222753024337528 13.2656397296768 0.130356059602878 0.0895103303879926
AT1G15270_at 8.6629704828768 8.9273459700729 8.87845094939795 9.08250653592808 8.79063566657917 8.8354477300731 8.94966414575069 9.21053154833499 8.73140812227076 8.90319033538001 9.25977583448586 9.14232657227186 8.91678862430845 9.34575590705948 8.89348004119606 9.17952621997924 8.85877902346733 8.73735689421361 8.62576686471866 0.109330451786565 0.105594961535674 0.103477677613728 0.103365864694593 0.100693158995949 0.109970403027322 0.106845403634526 0.104816880711094 0.114268124860200 0.102714923126082 0.108884586910712 0.105959503354537 0.106400654470303 0.108614208797998 0.104239543871130 0.100693158995949 0.103480319085156 0.107225415303988 0.104118606305989 1 1|0 -|/ 5250845 5251866 5251185.375 5250653 5252097 - gene protein_coding_gene FALSE TRUE AT1G15270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16040.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77733.1) 0.123700357950993 1.33659646175577 0.208629865496389 1 0.222723458820323 17.8147835021663 0.123700357950993 0.0737450481915446
AT3G57560_at 6.52432113876384 7.09745728331319 5.90424771573765 6.04540587799919 6.02061442517346 5.86255058789701 6.51481879299097 7.04820105011259 7.19312288705503 6.03950790876086 7.07181821873821 7.51067598215425 6.80693776442342 6.70931766281751 7.86634329774469 6.64714336875778 5.58640139515729 6.7820497504028 5.81339431489347 0.184646475095603 0.183773328029438 0.186581180160641 0.186782108257940 0.19383124180537 0.193854832427971 0.190499588755606 0.183721756899357 0.186573758518091 0.182239722485706 0.180626302174895 0.180017924987502 0.182486628939421 0.188577062951832 0.180017924987502 0.180322322683579 0.201827896158674 0.185537393270327 0.185131776190096 3 3 - 21322183 21322716 21322536.182 21321802 21323289 - gene protein_coding_gene FALSE TRUE AT3G57560.1 aspartate/glutamate/uridylate kinase family protein encodes a N-acetylglutamate kinase, involved in arginine biosynthesis similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein [Arabidopsis thaliana] (TAIR:AT4G37670.1); similar to Acetylglutamate kinase [Medicago truncatula] (GB:ABE83616.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Glutamate 5-kinase; (InterPro:IPR001057); contains InterPro domain Acetylglutamate kinase; (InterPro:IPR004662); contains InterPro domain N-acetylglutamate kinase; (InterPro:IPR011148) -0.157042010735971 -1.33639934639201 0.208692174056049 1 0.222496956349504 12.9878325924623 -0.157042010735971 0.140365519604450
AT1G67690_at 1.51461229506054 1.68875357513663 1.72717664305973 1.77672772665595 1.84861974808708 1.49614357614124 2.35456614951183 1.60203006177697 1.42362438395440 1.81036530856568 1.95492052017586 2.54016740097862 1.75404646573851 1.98779020502326 2.39298331780059 2.08317249300081 1.44263589883308 2.12866185154749 1.67277485434856 0.185819183405352 0.189933762536875 0.189577657104659 0.198789138327697 0.189252387919690 0.189468185700875 0.188087905532766 0.198253891540806 0.208253829956803 0.195751667689735 0.196124594345277 0.189127394255304 0.191909660223390 0.189176377960147 0.188247165975519 0.187228065355487 0.192019010854215 0.19856373278691 0.191043629644067 1 1|0 +|/ 25376133 25377360 25376712.3 25372749 25377393 + gene protein_coding_gene FALSE TRUE AT1G67690.1 peptidase M3 family protein / thimet oligopeptidase family protein similar to metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT5G51540.1); similar to Os01g0902200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045116.1); similar to endopeptidase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90533.1); contains InterPro domain Peptidase M3A and M3B, thimet/oligopeptidase F; (InterPro:IPR001567) 0.161067744981121 1.33624406935543 0.208741268278733 1 0.222318546044633 3.58664644764216 0.161067744981121 0.147180983313957
AT1G75940_at 1.07949438733153 1.31216827069008 0.9660496528663 1.57589083336022 1.16394082448534 1.2242017408028 1.30583915446598 1.35640079214431 1.61247779472481 1.48956778527613 1.27397911514804 1.02401619002287 0.846802528873965 0.773932045570223 1.19666017647053 1.07603119489621 0.97074103269957 1.41622281372577 0.875088137124412 0.187260682889877 0.194005283455694 0.191444586089931 0.190790191318057 0.187260682889877 0.187871505364062 0.187260682889877 0.193261949815021 0.191556844472811 0.196009407839878 0.188033004877068 0.194171978458091 0.192398055024962 0.188517617214819 0.189973499789889 0.189326132480820 0.190552745201718 0.19195070551529 0.189441594929890 1 1|0 +|/ 28516716 28517621 28517207.7 28514829 28517945 + gene protein_coding_gene FALSE TRUE AT1G75940.1 ATA27 (Arabidopsis thaliana anther 27); hydrolase, hydrolyzing O-glycosyl compounds encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen. similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to BGL1 (BETA-GLUCOSIDASE HOMOLOG 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G52400.1); similar to PYK10 (phosphate starvation-response 3.1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G09260.1); similar to beta-glucosidase [Brassica nigra] (GB:AAB38784.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.142183995072598 -1.33610201836854 0.20878618916668 1 0.222155344826322 2.44700289512716 -0.142183995072598 0.113773572129837
AT2G22830_at 4.3918100782065 4.60358326535123 3.46742820032076 3.38781910603310 4.86233233020802 3.91910309618138 3.40223881887973 3.42409670994419 3.78275819542971 3.25912106117334 4.19740731221559 4.54903617975937 3.42106243768972 4.65766029649035 5.28236976230207 4.11709168929788 3.19770754032603 3.56839978968351 4.14789249134201 0.22788129328103 0.231445311062551 0.239229204604426 0.239261335754004 0.232978617676392 0.244740830845406 0.236624036680933 0.228343530968713 0.239072605116039 0.246050893721577 0.227901482713958 0.229249751391647 0.229397166170827 0.242312813739755 0.240245352825646 0.22788129328103 0.236673245204705 0.245143640184152 0.22884470205015 2 2|0 -|/ 9731102 9731654 9731382.1 9730768 9733350 - gene protein_coding_gene FALSE TRUE AT2G22830.1 squalene monooxygenase, putative / squalene epoxidase, putative similar to XF1, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G58440.1); similar to squalene monooxygenase, putative / squalene epoxidase, putative [Arabidopsis thaliana] (TAIR:AT4G37760.1); similar to Putative Squalene monooxygenase [Oryza sativa (japonica cultivar-group)] (GB:AAO00687.1); similar to squalene monooxygenase [Datura innoxia] (GB:AAY22200.1); similar to Squalene monooxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94794.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Squalene epoxidase; (InterPro:IPR013698); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042) 0.173828212539642 1.33597561691453 0.208826167916127 1 0.222010133362191 7.85918434661674 0.173828212539642 0.167902683163047
AT1G77090_at 9.81316852657934 10.0103188429851 10.0907200165683 9.99668760814695 10.1706502438776 9.85513021578235 10.9024877757830 11.081587199033 10.7733361425897 10.7001007098476 11.0195010506799 10.9563285378284 10.7685333510034 11.0546579777166 10.8005944768759 10.9669650473653 10.5666343030337 10.8301674826353 10.607706038563 0.0868992773904445 0.0831267879946993 0.0855462138031288 0.0837991735778596 0.0840217829771102 0.0846994270804664 0.0863291782101367 0.0837172076677075 0.087544622341716 0.0826511449732368 0.0826511449732368 0.0826511449732368 0.0826511449732368 0.0826511449732368 0.0870953926998144 0.0826511449732368 0.0934689913966386 0.0826511449732368 0.083467861688354 1 1|0 -|/ 28965471 28966527 28965909.9 28965290 28966816 - gene protein_coding_gene FALSE TRUE AT1G77090.1 thylakoid lumenal 29.8 kDa protein Identical to Thylakoid lumenal 29.8 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O49292); similar to thylakoid lumenal 20 kDa protein [Arabidopsis thaliana] (TAIR:AT3G56650.1); similar to Os12g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066340.1); similar to thylakoid lumenal 29.8 kDa protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96032.2); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.123442541804554 -1.33574632306055 0.208898706044058 1 0.221746742269298 21.0221623412907 -0.123442541804554 0.073286113027095
AT4G21865_at 1.66325501338437 2.12372461801086 2.42511217086525 2.31703096143997 1.92761003271683 1.96073313123498 1.15687249092499 1.43537634532603 1.52047585433891 1.52510684751658 1.50679401887420 1.34089778857916 1.45809416171549 1.31243437585088 1.37975664409531 1.49467648260431 1.48214823328111 0.95798962962337 1.94550773202151 0.26583064350448 0.260632052313513 0.287186412518842 0.274417413826146 0.261952684215578 0.263202888091515 0.260632052313513 0.268947306428493 0.283930228697786 0.277334381140403 0.282538162930856 0.260632052313513 0.271328688657176 0.278414033255626 0.271719405511946 0.273462563231491 0.260632052313513 0.265357501410446 0.264661705657310 4 4|0 +|/ 11602265 11603052 11602709.5 11601917 11603288 + gene protein_coding_gene FALSE TRUE AT4G21865.1 unknown protein 0.132858281344169 1.33561447744999 0.208940425426338 1 0.221595304725217 3.39136220954807 0.132858281344169 0.0951604514487749
AT4G15840_at 6.69571854908611 6.98260038026648 6.86605291452595 6.78335800217491 7.0767031443465 6.86792688797975 6.20731364384548 6.4278677417698 6.69617879742168 6.70498943761137 6.46897026412613 6.4847710031194 6.73873245933714 6.4423408106171 6.39312394922934 6.68516228591425 6.82800681476814 6.76485524418376 6.61995467944907 0.209353448690551 0.20511098175456 0.207490425856253 0.213505655275827 0.214866105122588 0.210754213252686 0.213638155579175 0.220962136381544 0.213789190464759 0.205125914663754 0.198624040933342 0.210646965945339 0.207984095210798 0.214752037223599 0.209706083232705 0.197759385863503 0.245891861604989 0.226514002223056 0.207691940296547 4 4|0 +|/ 8999871 9000831 9000426.375 8996925 9001051 + gene protein_coding_gene FALSE TRUE AT4G15840.1 similar to Os01g0932600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045299.1); contains InterPro domain TRAF-like; (InterPro:IPR008974) 0.123586437133007 1.33555586450902 0.208958974299265 1 0.221527985380427 13.3756691540357 0.123586437133007 0.0737000111767959
ATCG01010_at 5.00947096730653 7.00652576597501 6.2731450335895 6.72084582013746 6.07903105815868 6.17819865281679 6.29930553490142 6.93623524882002 7.14784320478698 7.264528090269 6.70513676182483 7.69392063478281 6.0504013082524 6.84340037482109 5.6520585716073 7.43306006912738 4.9805554470574 7.93409822867424 7.48935638925942 0.320659801579513 0.300386492948518 0.312474724205008 0.315807507101143 0.304857505969674 0.302707169624363 0.306021334616258 0.299773250724235 0.304405595388779 0.302742025791986 0.299773250724235 0.303158645458557 0.30796969047953 0.307273573122691 0.313573954660173 0.299773250724235 0.334503836384623 0.309595692612591 0.300858959091734 C C - 110447 110926 110573.273 110398 112638 - gene protein_coding_gene FALSE TRUE ATCG01010.1 Chloroplast encoded NADH dehydrogenase unit. Identical to NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (ndhF) [Arabidopsis Thaliana] (GB:P56752;GB:Q9MS93); similar to NADH dehydrogenase subunit F [Catolobus pendulus] (GB:ABC65933.1); similar to NADH dehydrogenase subunit F [Turritis glabra] (GB:ABC66036.1); similar to NADH dehydrogenase subunit F [Erysimum capitatum] (GB:ABC65965.1); contains InterPro domain NADH dehydrogenase (ubiquinone), chloroplast chain 5, C-terminal; (InterPro:IPR002128); contains InterPro domain NADH/Ubiquinone/plastoquinone (complex I); (InterPro:IPR001750); contains InterPro domain NADH-plastoquinone oxidoreductase, chain 5; (InterPro:IPR003945); contains InterPro domain NADH-Ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal; (InterPro:IPR001516); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 5; (InterPro:IPR003916) -0.319538104164254 -1.33542511968233 0.209000355209957 1 0.221377827030378 13.2939221698583 -0.319538104164254 0.371329402485972
AT4G37820_at 4.27668752593276 4.83460005646836 4.35124985385807 4.35171399768241 4.25255782191918 4.47158790575656 3.96308228230663 4.12890167651141 4.89299746270353 4.49133971033469 5.28785170439953 5.28582117155024 4.34782061609896 4.86147706874328 5.10251662455876 5.10530330036006 4.4419703497372 4.53763946667862 4.56400460693879 0.207824457510412 0.208273548184018 0.209489001424924 0.210480532592976 0.206315730037904 0.220385194435417 0.212451854159047 0.203913739165448 0.211580041170085 0.205464300432195 0.205113749820281 0.209126701767127 0.208528336078825 0.207104325716787 0.202481540464371 0.20463508534885 0.209906654192851 0.207280192052697 0.203428218336146 4 4 + 17786756 17787222 17787027.182 17785249 17787465 + gene protein_coding_gene FALSE TRUE AT4G37820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to retinitis pigmentosa GTPase regulator-like protein [Takifugu rubripes] (GB:AAG00554.1) 0.13890614363638 1.33515905777373 0.209084585089887 1 0.221072290715394 9.0891712889335 0.13890614363638 0.107619529564821
AT3G22870_at 1.57430397687481 1.46834568366848 1.41565775092186 1.48226336254103 1.31495509516081 1.23767311748484 1.42706999079353 1.88097565960426 1.69201389689111 1.23544351581553 1.44545600332379 1.03235474853681 1.5940512981012 1.60741803814480 1.59290970622651 1.28090411349394 1.08881866591512 2.06538107191701 1.55058116412859 0.202947226165356 0.197567073923306 0.203982439711606 0.211596142262756 0.207680210456499 0.197567073923306 0.205538847693377 0.200757057719637 0.213131110890400 0.205877915564201 0.209713640747162 0.204581867924802 0.209665693400907 0.203139478902155 0.207353354303566 0.200791292999088 0.209127727079396 0.197567073923306 0.206397181446459 3 3 + 8096879 8097336 8097118.818 8096237 8097478 + gene protein_coding_gene FALSE TRUE AT3G22870.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22421.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.127152158056240 -1.33493527056319 0.209155453385106 1 0.220815333966959 2.95320119529077 -0.127152158056240 0.0825719819810568
AT1G51430_at 4.71656348943514 4.16783071311377 4.47956816552549 3.98862123518621 4.75422578275991 4.80549175907861 4.50855769540124 4.15384190700779 5.17811897294393 4.75355743421877 5.2102809338249 5.57310010260183 4.96875241849644 4.85068504416993 5.30359817259412 5.28942888058532 4.70312966779004 4.82323639379071 4.7540365322978 0.206653785987457 0.204401882625209 0.208427047169761 0.219570860126536 0.206900672093801 0.204381038314718 0.203817161937480 0.210382137883479 0.203817161937480 0.213085364601552 0.206387531118787 0.207594289956141 0.215060919074126 0.214623737546099 0.204860766746925 0.203817161937480 0.208598031237043 0.218987871497381 0.211205187092344 1 1|0 +|/ 19071909 19073186 19072529.75 19071909 19073444 + gene protein_coding_gene FALSE TRUE AT1G51430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1) 0.157658544821450 1.33490678047621 0.209164476970074 1 0.220782623253412 9.43959464254777 0.157658544821450 0.141713495165787
AT3G56140_at 9.3939328892324 9.49588649644393 9.69431992236962 9.67705022180137 9.58952957093021 9.30369656185318 9.81621447975929 9.80390680936385 9.46471329909296 9.47408184071408 9.3572310916887 9.19283851260812 9.65264004524002 9.48108279811659 8.88743799022712 9.78892431092403 9.22947241252051 9.17102453898558 9.60987179793836 0.117319656274576 0.112796158362005 0.117964079007809 0.120494816043683 0.116832066141422 0.119063588744322 0.117854148925410 0.119612221827931 0.124011122532811 0.116069605501029 0.112796158362005 0.113481863959419 0.113651298043074 0.120884806455802 0.123640334876054 0.112796158362005 0.130753139552344 0.120197231680376 0.117615189744015 3 3 + 20842820 20843537 20843190.909 20840261 20843850 + gene protein_coding_gene FALSE TRUE AT3G56140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40400.2); similar to Trimeric LpxA-like [Medicago truncatula] (GB:ABE84885.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44243.1); similar to Os01g0826900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044677.1); contains InterPro domain Protein of unknown function DUF399; (InterPro:IPR007314) -0.116238474752120 -1.33467050519328 0.209239324183518 1 0.220511363979783 19.0274690065296 -0.116238474752120 0.0526452563130926
AT1G16420_at 3.20793554173800 3.14307722342585 4.38256176263276 4.4328110643615 2.76386312361417 2.54902156005332 2.16925186611139 1.54659148623988 2.99542874942842 2.14353365613786 2.19629307283182 1.28445204710764 1.10645125082454 2.08363903526637 1.96789248101251 1.82991893351134 1.79239413443261 1.81980885752000 2.33176568582966 0.263363202269173 0.266058976017537 0.266032692095687 0.290263159084631 0.252682480062982 0.252222963150622 0.252222963150622 0.256764505258097 0.257246943016305 0.253628239715896 0.262579713068692 0.252750581089094 0.258767202925374 0.257302440282710 0.257143349116699 0.256229707816899 0.252906870438327 0.261169038177117 0.252222963150622 1 1 - 5612327 5612856 5612585.636 5612144 5613861 - gene protein_coding_gene FALSE TRUE AT1G16420.1 latex-abundant protein, putative (AMC8) / caspase family protein similar to latex-abundant protein, putative (AMC4) / caspase family protein [Arabidopsis thaliana] (TAIR:AT1G79310.1); similar to metacaspase 1 [Lycopersicon esculentum] (GB:AAM51555.1); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) 0.142606938859017 1.33466185721347 0.209242064108144 1 0.220501436174077 5.14956366536977 0.142606938859017 0.114868993070925
AT1G14750_at 0.685481882074504 0.200537308851895 0.879758794864275 0.57137304685962 0.389566386782602 0.451527609027226 0.259216135067460 0.172379693425467 0.503827904983172 0.71118947817168 0.603812094641154 0.530820446825506 0.462122435204031 0.549148138852846 0.607476934254766 0.6242279489131 0.454070124174368 0.62953865447397 0.375147616767017 0.221765796473076 0.223190565079524 0.219803000953549 0.228898139996677 0.225508880050709 0.220484180762154 0.215013175364403 0.215013175364403 0.231272806047017 0.221817843094746 0.225677688487753 0.223120989049431 0.217377315954145 0.218530906252693 0.222170638474516 0.219126898735539 0.225297356293726 0.234725393438898 0.217080275904449 1 1|0 -|/ 5079935 5080725 5080208.222 5079402 5082515 - gene protein_coding_gene FALSE TRUE AT1G14750.1|AT1G14750.2 SDS (SOLO DANCERS); cyclin-dependent protein kinase|SDS (SOLO DANCERS) mutant shows aberrant homolog pairing in meiosis similar to CYCB2,2 (CYCLIN B2,2), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT4G35620.1); similar to Os03g0225200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049431.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN52745.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.135624900861055 1.33457840876889 0.209268504460554 1 0.220405640382312 0.995083655689843 0.135624900861055 0.101152304298108
AT1G67180_at -0.0357552300122444 0.317907472077103 0.636722839172379 0.647432823600831 0.607429701074998 0.368892452935139 0.290578856153031 0.391154216550865 1.08329396569236 1.05781135107126 0.884964146404866 0.619210278577948 0.504915115334084 1.0727779621358 0.904627270149316 0.99898592623035 1.23942792474621 0.697830502923217 0.681295571461305 0.224600583570536 0.23922831614595 0.230745546355987 0.222863821581978 0.226781575407145 0.251740018458887 0.222863821581978 0.222863821581978 0.236250963554855 0.228960417615104 0.228509360213156 0.237830635030007 0.225792762768194 0.227748821554352 0.228141393339846 0.227836717739861 0.222863821581978 0.230549845948374 0.231138547617063 1 1|0 +|/ 25135098 25135763 25135449.4 25133394 25135832 + gene protein_coding_gene FALSE TRUE AT1G67180.1 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G05670.1); similar to Os08g0414200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061801.1); similar to BRCA1 C Terminus (BRCT) domain, putative [Medicago truncatula] (GB:ABE78089.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.124345110120698 1.33449073049371 0.209296287996985 1 0.220304993384561 1.30611673488786 0.124345110120698 0.0758697052239652
AT4G31990_at 10.1640411844487 10.1099165991558 10.2846151867610 10.3027364665010 9.84612625260934 9.7961296807013 10.4905581117737 10.2365968085398 9.44222051970851 9.84446854406148 9.710596370109 9.89069115460597 9.79612913301467 9.84571748914553 10.2375621672868 9.84904006820839 10.1631343853231 9.86466107784815 9.20798918008799 0.113729307515754 0.105325816736809 0.110349791639220 0.110478873250262 0.10414108495916 0.105531797139119 0.107216062500051 0.110487699052435 0.114709821458738 0.115928079996370 0.113509906784384 0.108868939759777 0.111679946832981 0.110096119638132 0.106949119861607 0.108226642423250 0.107388856028847 0.120117007793301 0.116206546914940 4 4|0 -|/ 15471089 15471977 15471469.4 15470767 15473862 - gene protein_coding_gene FALSE TRUE AT4G31990.1|AT4G31990.2|AT4G31990.3 ASP5 (ASPARTATE AMINOTRANSFERASE 5) encodes a plastid-localized aspartate aminotransferase Identical to Aspartate aminotransferase, chloroplast precursor (EC 2.6.1.1) (Transaminase A) (ASP5) [Arabidopsis Thaliana] (GB:P46248;GB:O49392;GB:Q8LGE6); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G19550.1); similar to Asp aminotransferase (GB:1908424A); similar to aspartate aminotransferase-like [Solanum tuberosum] (GB:ABB55364.1); similar to aspartate aminotransferase [Medicago sativa] (GB:AAB46611.1); contains InterPro domain Aspartate/other aminotransferase; (InterPro:IPR000796); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.114294560035169 1.33410952308706 0.209417120660451 1 0.219867454048265 19.8627988173007 0.114294560035169 0.0458689057298629
AT2G01750_at 2.44081625311702 2.28452416067306 2.54766379568712 2.22333872276411 2.59895136932186 2.42000414693416 3.08926902088422 2.85748726314429 2.62365387169338 2.16732451303116 2.48443236406981 2.23491279589647 1.85724434138316 1.94794990365734 2.65857968727516 2.22893205619958 2.21657909066372 2.52403216819520 2.11132848578226 0.218035466303915 0.218727492558433 0.209229191322414 0.214571238113796 0.223783092714462 0.209229191322414 0.224990129644346 0.214808590761619 0.213038156568757 0.216233931036402 0.216615576813541 0.211704310951274 0.219253430763150 0.217141406179445 0.209229191322414 0.215580752537269 0.216825906018248 0.216114345230598 0.212744483892895 2 2|0 +|/ 331057 331676 331357.5 328350 332112 + gene protein_coding_gene FALSE TRUE AT2G01750.1 ATMAP70-3 (microtubule-associated proteins 70-3); microtubule binding Encodes a microtubule associated protein (MAP70-3). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G68060.1); similar to ATMAP70-4 (microtubule-associated proteins 70-4), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G14840.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) -0.126110410847940 -1.33399710013091 0.209452766776574 1 0.219738434681647 4.84268272044231 -0.126110410847940 0.0803090858733706
AT2G46080_at 8.077976337529 8.54169590131035 8.52959339906766 8.83670732781811 8.46734021705146 8.3406726936111 8.31062110318106 8.47274729214904 7.3307422198303 7.72802687160114 7.87299874043824 7.5641637535188 8.27783884712985 7.72090056289502 7.46730283540852 8.1300732205389 8.06115312007394 7.48921340996892 8.17100244517168 0.191007763427734 0.183971473577758 0.192115599986183 0.183971473577758 0.188151025113923 0.194594628620853 0.18485204041524 0.191303866575125 0.197231865294708 0.206222544329361 0.191868823524106 0.189750467605709 0.189996923170145 0.19192200148151 0.197008671227797 0.186873903894661 0.197735495906043 0.207715696416931 0.19602580183129 2 2 - 18955412 18955914 18955660.364 18955190 18957178 - gene protein_coding_gene FALSE TRUE AT2G46080.1 similar to BPS1 (BYPASS 1) [Arabidopsis thaliana] (TAIR:AT1G01550.2); similar to unknown [Solanum tuberosum] (GB:ABB16971.1); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987) 0.136258316611773 1.33369916667105 0.209547257254493 1 0.219396555445076 16.2302756540218 0.136258316611773 0.102626575298302
AT2G32980_at 5.91313385641695 5.99474133978277 5.05352390372961 5.46799502962995 5.73391277205709 5.95716609041874 5.6136631360078 5.6896763494581 5.31671645113637 5.68291791693672 5.76412516510408 5.27304752651021 5.31444639917805 5.67097591895077 5.97988631822119 5.43896272799306 5.21558257255374 5.51861106686805 5.58231564647119 0.213818699552774 0.212616547295522 0.217902850042722 0.223525724060466 0.211455004004175 0.234314363726717 0.215908143847221 0.217532433035953 0.224559120819456 0.222201307228134 0.216631805496649 0.211455004004175 0.211455004004175 0.215546810282307 0.219297528795182 0.215469465030667 0.223656103273231 0.220916673631924 0.221331814710741 2 0|2 /|- 14004672 14005634 14005059 14004459 14006905 - gene protein_coding_gene FALSE TRUE AT2G32980.1 similar to Os08g0204800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061229.1); similar to PREDICTED: similar to MGC108135 protein [Strongylocentrotus purpuratus] (GB:XP_787845.1) -0.127508090524961 -1.33350417093451 0.209609119810187 1 0.219172826209925 11.2026122514062 -0.127508090524961 0.0837245095806619
AT1G24000_at 2.21280013682193 2.13847423520348 2.33711278053681 2.35561833027871 2.14400820119786 2.30651783607521 1.88377753754794 1.81558421996703 2.20605187834667 2.34840590771484 2.03709301076583 2.17398513352107 2.13268507724007 2.45637576520986 2.38318765227111 2.33318287313837 2.31770749167624 2.24848533430485 2.37800178467985 0.189744997505040 0.194039178130455 0.197596612469034 0.191451863944317 0.191860626053514 0.189744997505040 0.194170791828824 0.194067701846259 0.1979834591768 0.190540262809405 0.198537912391288 0.196996281290842 0.196100372192022 0.192310295636614 0.189744997505040 0.196916838939794 0.190517839621812 0.202741980814208 0.190408448697384 1 1 - 8496055 8496482 8496304.455 8496046 8496555 - gene protein_coding_gene FALSE TRUE AT1G24000.1 Bet v I allergen family protein Identical to Uncharacterized protein At1g24000 [Arabidopsis Thaliana] (GB:P0C0B0;GB:Q9LR93); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23910.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.111336594994595 1.33333668456875 0.209662267049615 1 0.218980678143392 4.43481548429348 0.111336594994595 0.0332546522298730
AT1G70160_at 10.8525419644820 11.1197509587641 11.0842390537935 11.1099496786391 11.2975638530506 10.9012410975598 10.9761471887564 10.8147868982943 10.1297601612918 10.3931337648544 10.435699057746 10.2053464576642 10.5253128114897 10.1607584049286 9.97507007284273 10.4296068858085 10.6335960237676 10.3525178933285 10.1940933948056 0.110981205138152 0.111218309057843 0.107554496622593 0.109075588664387 0.108666201603507 0.112510923675976 0.108621982907705 0.109708337238377 0.127588216356918 0.117743177263351 0.112207687203518 0.107159547227131 0.114974132730234 0.119421488866075 0.109960423510443 0.108007810830597 0.122261658575424 0.120516430996466 0.112570926782445 1 1|0 +|/ 26425208 26425954 26425661.7 26423612 26426192 + gene protein_coding_gene FALSE TRUE AT1G70160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54870.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53001.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89049.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93629.1) 0.129092172741461 1.33323696385382 0.209693915995314 1 0.218866281925179 21.3088946989663 0.129092172741461 0.0874175408509952
AT4G17000_at 2.54409688378354 2.22846410076468 2.17758127669803 2.76260745739707 2.43604864520044 2.20124765722834 2.51373585369608 2.00611077939223 2.66976184044222 2.39758823182574 2.54436575994659 2.66264791204873 2.92031953867101 3.47830242330362 3.02818901993450 2.34977429831211 3.00635648840287 2.43309901400618 2.57957363756794 0.210501951104783 0.203918176101429 0.202810446108918 0.211708261782137 0.197495748086694 0.199763224684685 0.197615586213197 0.208311280334554 0.202034363475656 0.203939201078771 0.206387642802492 0.199093975982337 0.197210354930336 0.202252117208675 0.202699427490885 0.202077347512797 0.202889572260121 0.197210354930336 0.200159932234956 4 4 - 9567091 9567848 9567456.818 9566921 9569932 - gene protein_coding_gene FALSE TRUE AT4G17000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to hypothetical protein [Capsella rubella] (GB:CAC82614.1) 0.162588295802371 1.33311114761599 0.209733852664678 1 0.218721958302960 5.0346647701568 0.162588295802371 0.150338036353820
AT3G23890_at 2.07152060076241 1.96066405534828 2.36526909888493 1.97842503969854 1.70692998000288 1.85868159726854 1.92623017026430 1.68261104943943 2.28743039511282 2.63226338943534 2.70846231200023 2.93775817907737 2.43966642977918 2.36665365223601 3.49768991568722 2.40128145836555 2.33524646840803 2.52672167527811 2.46730707618563 0.210612265017679 0.217949105664282 0.210612265017679 0.222966307926533 0.210612265017679 0.214138753879329 0.210612265017679 0.227779154562161 0.219691428649152 0.214683366815604 0.210616371303028 0.211181625123682 0.221381843291651 0.216184421074317 0.223888319332251 0.210612265017679 0.210612265017679 0.215326429199143 0.223341475234581 3 3|0 +|/ 8630329 8631027 8630746.5 8624757 8631334 + gene protein_coding_gene FALSE TRUE AT3G23890.1 TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues. Identical to DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II) (TOP2) [Arabidopsis Thaliana] (GB:P30182;GB:Q38807); similar to DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative [Arabidopsis thaliana] (TAIR:AT3G10270.1); similar to putative DNA topoisomerase II [Oryza sativa (japonica cultivar-group)] (GB:BAD07880.1); similar to DNA topoisomerase II [Nicotiana tabacum] (GB:AAN85207.1); similar to topoisomerase II [Scutellaria baicalensis] (GB:BAE06274.1); contains InterPro domain DNA topoisomerase, type IIA, subunit B, conserved region; (InterPro:IPR011558); contains InterPro domain DNA topoisomerase, type IIA, subunit B or N-terminal; (InterPro:IPR001241); contains InterPro domain DNA topoisomerase, type IIA, subunit B, region 2; (InterPro:IPR013506); contains InterPro domain DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta; (InterPro:IPR013758); contains InterPro domain DNA topoisomerase, type IIA, central; (InterPro:IPR013760); contains InterPro domain DNA topoisomerase II, eukaryotic-type; (InterPro:IPR001154); contains InterPro domain DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta; (InterPro:IPR013759); contains InterPro domain DNA topoisomerase, type IIA, subunit A or C-terminal; (InterPro:IPR002205); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) 0.128210675559742 1.33265313174901 0.209879289461024 1 0.218196649028831 4.50080076475794 0.128210675559742 0.0855380913165875
AT3G45770_at 8.54786887932249 8.33362181748002 8.47972666298189 8.39458670302263 8.7982944467974 8.55917364832821 8.36813041217761 8.03511125186998 8.09327504224082 7.80740037880256 7.86686459548039 7.91385750283718 7.6828484455086 7.9740826936356 7.85353747107346 8.0412708993339 7.80803899587025 7.75541040498272 7.63725923656895 0.142919323645555 0.139142766374846 0.147391468519611 0.142613002423859 0.146715162178183 0.143864774045669 0.140156367777597 0.139142766374846 0.151908018221189 0.149743551299512 0.141050306667015 0.141881453505345 0.149089819521504 0.146769301888236 0.144143212602963 0.140032120560749 0.149090187301358 0.14698895340035 0.144090244298565 3 3|0 -|/ 16816783 16817734 16817333.556 16816547 16818841 - gene protein_coding_gene FALSE TRUE AT3G45770.1|AT3G45770.2 oxidoreductase, zinc-binding dehydrogenase family protein Identical to Probable trans-2-enoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.38) [Arabidopsis Thaliana] (GB:Q8LCU7;GB:Q8W4H6;GB:Q9M166); similar to ARP protein (REF) [Arabidopsis thaliana] (TAIR:AT1G49670.1); similar to Alcohol dehydrogenase superfamily, zinc-containing [Medicago truncatula] (GB:ABE81735.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.126386465978079 1.33210779286502 0.210052563217749 1 0.217571350775082 16.2935477753947 0.126386465978079 0.0813966311071703
AT4G29735_at 9.3982977906359 9.5184134365247 9.16892618334385 9.4038543150194 9.44265661978314 9.157835626824 8.6179057986998 8.8047102802991 8.9545194931317 8.90779630365836 9.31295007863025 9.10850263176237 8.93337917695791 8.97928243316565 9.20619626590334 8.85635334600921 8.51036267391427 8.79727140483615 8.9106388889816 0.127669608298432 0.123450400520151 0.133624515315203 0.121475287616492 0.122877477824813 0.123328509599796 0.121635846562183 0.124916042498355 0.137044978744050 0.121472709260071 0.123361321584929 0.124141242349273 0.125531308394672 0.133962903080935 0.127235548559210 0.121378430636801 0.135176156370714 0.123783476309022 0.122036631208487 4 4|0 -|/ 14562971 14564143 14563593 14562645 14564384 - gene protein_coding_gene FALSE TRUE AT4G29735.1 similar to hypothetical protein [Gossypium hirsutum] (GB:CAE75665.1); similar to Os06g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057897.1); contains InterPro domain Protein of unknown function UPF0197; (InterPro:IPR007915) 0.123602691254783 1.33208290253963 0.210060474588888 1 0.217542815200461 18.1327527463852 0.123602691254783 0.0745618440855518
AT4G23690_at 2.45838028852225 3.02165877944459 1.79509692891312 1.63768037214861 1.83585776690178 2.15648664176897 3.07119855827487 4.10335945326901 3.63430546321644 3.25152243391077 4.60665174028438 5.97130492269774 3.82872561152919 4.81318776442933 5.48746475051282 5.00742651410798 4.14152657686596 3.56652447578628 4.44249009130816 0.300712273643977 0.288976817352464 0.297282809596265 0.289435612687095 0.297108931503936 0.299544313909305 0.291474906420865 0.305142381939499 0.321982809409103 0.295587526103193 0.296019591542725 0.298318220309302 0.293567593391831 0.294446893604989 0.302965683389908 0.292075792176747 0.298582093545415 0.295076487297030 0.288492220709636 4 4 - 12339220 12339685 12339451.273 12338881 12339757 - gene protein_coding_gene FALSE TRUE AT4G23690.1 disease resistance-responsive family protein / dirigent family protein similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT1G64160.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25363.1); similar to dirigent protein [Forsythia x intermedia] (GB:AAF25357.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) -0.202811647031487 -1.33174441137933 0.210168088196922 1 0.217154788033744 6.73694361899132 -0.202811647031487 0.212668735833430
AT2G27230_at 6.21107299118778 6.43003877252572 6.41227968280397 6.39967265077148 6.56422465045619 6.46523856936809 6.26365026511947 6.17924313970135 6.05442474772726 6.6161044136811 6.26230788455861 6.5021676425486 6.23229201421876 6.41610389597573 6.30535281160555 6.74294392672629 6.41259706631762 6.56255413774362 6.50437998808953 0.175295869391092 0.171921508123718 0.169017146969249 0.166933024622576 0.169251285924597 0.169042265358100 0.174737171941117 0.172538628811689 0.171187224696771 0.166933024622576 0.173858493763605 0.167788793914970 0.173634959449817 0.177412229562443 0.171916924646660 0.166933024622576 0.166933024622576 0.171609142287501 0.174343942333625 2 2|0 +|/ 11660178 11660892 11660530.9 11657436 11661221 + gene protein_coding_gene FALSE TRUE AT2G27230.1|AT2G27230.2 transcription factor-related similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G64625.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABD32181.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.113628067756118 1.33155918401193 0.210226995238253 1 0.216942482901467 12.7762657430557 0.113628067756118 0.0441298750207008
AT4G24630_at 4.209185271765 4.10441268740141 4.60494215979668 4.10519693322600 4.30637548931884 4.42036434274002 4.48333654597137 4.46599981305306 4.8063416830104 4.35223347398152 4.30520043162673 4.60263951237432 4.33251909732634 4.51126489635999 3.64807305146543 4.57730415974673 5.00974347746629 4.26634105519587 4.97385949549208 0.240323377119695 0.238121121492025 0.235038659671389 0.24089169483857 0.24370143681811 0.243037420537214 0.237928239094602 0.236391288767113 0.235038659671389 0.247090851737466 0.241740400020958 0.236018443943155 0.241661290192522 0.241409333420754 0.238357248975216 0.235038659671389 0.239541654245278 0.244692346784417 0.246154323026947 4 4 + 12716312 12716958 12716666.7 12714634 12717121 + gene protein_coding_gene FALSE TRUE AT4G24630.1 zinc ion binding similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT5G50020.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE86020.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) -0.130344844455056 -1.33152141118042 0.21023900963968 1 0.216899190711565 8.89620028592065 -0.130344844455056 0.0905882250048612
AT2G22780_at 9.0040785039982 8.90778983109182 9.10928379191608 9.16281383474017 9.02256328931383 8.76998975389138 8.93448009629026 8.88181200592394 7.97772677954335 7.83558994735481 7.74619925834602 7.86370284566038 7.91605748749267 8.19581844331517 7.9622919201924 7.96372957064571 8.1272006518001 7.96122449353431 7.65192135886317 0.169861737781071 0.170837556386858 0.171183238041437 0.178590662269075 0.168896648039242 0.168479302047672 0.177608474993676 0.169048856281800 0.177763192050193 0.176485567946473 0.177041870666376 0.168532211519664 0.167658791485974 0.171913757421176 0.172266735042947 0.167286076660835 0.179244181046872 0.174170462020342 0.173625557725838 2 2|0 -|/ 9697259 9698168 9697804.125 9696495 9699223 - gene protein_coding_gene FALSE TRUE AT2G22780.1 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); malate dehydrogenase Identical to Probable malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:O82399); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G09660.1); similar to Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures (GB:1SEV); similar to Malate dehydrogenase, glyoxysomal precursor (GB:P19446); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) 0.114702306712772 1.33046339951241 0.210575761892019 1 0.215686930190524 16.8684884446259 0.114702306712772 0.0485492491672081
AT3G42080_at 0.701608530279793 1.04435122105751 0.99860597019258 1.05512907209595 0.963932942731238 0.91159851247851 1.02156184588568 0.877381937978787 1.11722466048911 0.722624484299232 1.12357506747131 1.02539008116242 1.01793225680512 1.09984482860218 0.789025166819487 0.924914054139302 0.980721855570374 1.33285916080416 0.763085064923513 0.187815909791739 0.186438641954790 0.187766377308246 0.192458716011855 0.186438641954790 0.186438641954790 0.186438641954790 0.187282270931420 0.194595144061409 0.189474832141040 0.194467429369524 0.187260478412149 0.193815872856756 0.186438641954790 0.186438641954790 0.192673344438215 0.186438641954790 0.199127529733621 0.190068493405316 3 3|0 +|/ 14271621 14271847 14271757.7 14271580 14272153 + gene protein_coding_gene FALSE TRUE AT3G42080.1 contains InterPro domain t-snare; (InterPro:IPR010989) 0.120114406462651 1.33021497203095 0.210654897906256 1 0.215402381496064 1.89898502683371 0.120114406462651 0.0657138831212
AT4G00232_at 2.02879654579789 2.33102993105772 2.13622132835712 2.66420320319577 1.84816526136614 2.15502583503498 1.91895455493183 1.81549714698125 1.98619613529619 2.11854741744587 2.12154207607585 2.09116375997825 2.06333628209623 2.24553334119042 2.08108248717608 2.05554814899605 1.81984017886985 2.47398817083992 1.91758141530267 0.170453724224689 0.176864164778433 0.171110991887245 0.172995562713911 0.184487038390192 0.172059637694130 0.178843575598527 0.171534905174333 0.183581596631052 0.169156038366143 0.171052608311786 0.171350265815349 0.173603690663636 0.176287400165608 0.169917760265311 0.169905066096889 0.192260905029253 0.173999897463523 0.176003987897856 4 4 - 100286 100696 100473.455 100257 100721 - gene protein_coding_gene FALSE TRUE AT4G00232.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41765.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.144448505967125 1.33002838882071 0.210714349720051 1 0.215188693547576 4.17545970667421 0.144448505967125 0.119266774151562
AT1G62310_at 3.13776412518715 3.28504405569757 2.90050889842962 3.44782423379049 3.04652893233699 2.69850470904967 2.88290161936878 2.49454652367267 2.72612453192856 2.62350482630633 2.71436227594745 3.10984991757467 3.39426892322537 3.36866551840983 2.70570692844709 3.10010292126518 2.79454342439605 2.67106715188211 2.90394879481694 0.228475787452784 0.229672266394917 0.223016686071425 0.228131965113275 0.233014180388815 0.225801625157545 0.225362004176012 0.225692868428376 0.223016686071425 0.229048661216348 0.223016686071425 0.237989856930923 0.231901241273554 0.229259096936070 0.223016686071425 0.223016686071425 0.235471380290630 0.236690250988319 0.223016686071425 1 1 - 23039704 23040503 23040074.727 23039704 23042966 - gene protein_coding_gene FALSE TRUE AT1G62310.1 transcription factor jumonji (jmjC) domain-containing protein similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G11950.1); similar to jmjC domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT81741.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.152202888689840 1.32997782279474 0.210730464177946 1 0.215130785448984 5.85345968735532 0.152202888689840 0.133284225376151
AT3G10800_at 7.26389169575661 7.51837491508131 7.4923404762668 7.36272383166693 7.32282899308862 7.41841801499365 6.46720899358541 6.9927690301531 5.76085868254138 5.92885486138082 6.06220570069492 5.56343260511894 5.91813025253942 6.08101121449526 5.97225379146632 6.11701959286310 5.61169353908098 5.64366248911999 6.11764500780623 0.225482024336468 0.224255458518861 0.223834338448066 0.231790928817165 0.221357595757793 0.230548286847049 0.218925822851299 0.224798562461920 0.230056192617484 0.232838664785206 0.218925822851299 0.226819998460934 0.220201943419076 0.246720727681116 0.225296134376945 0.218925822851299 0.246070208996005 0.230412343555263 0.229458609938834 3 3 + 3380762 3381376 3381095 3379259 3381626 + gene protein_coding_gene FALSE TRUE AT3G10800.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G40950.1); similar to putative bZIP transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAT85257.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.136953317311393 1.32986429903476 0.210766645809957 1 0.21500078388627 13.1333006598650 0.136953317311393 0.104824967718281
AT1G74750_at 2.22155414370572 1.89549152931153 1.96377691908723 2.25800562492794 1.88593990000194 2.1180630241506 1.64391748046061 1.55035770603349 2.47858555099542 1.94489212983301 2.3798631786127 2.43658404513677 2.02973702252909 2.12873702936407 2.03831472676549 1.88123116445317 2.59582351316767 2.30690888590457 2.16357741092555 0.195879369362701 0.190002376012564 0.19361831211738 0.190307874072899 0.199023938177716 0.189277022792812 0.189835817299908 0.189277022792812 0.198691706497493 0.194836634054555 0.192282825381203 0.191146265775653 0.193537980940654 0.193113406301922 0.190659771441503 0.191549033874509 0.200842090495760 0.19975312242512 0.203040230775323 1 1 + 28092429 28092905 28092656.545 28090461 28093028 + gene protein_coding_gene FALSE TRUE AT1G74750.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18900.2); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os12g0638900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067384.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE93331.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.128790533660562 1.32984736698819 0.210772042732979 1 0.214981394841597 4.15230577912306 0.128790533660562 0.0874777094229327
AT1G02890_at 8.75106274545576 8.67088372357 8.98326371652022 8.95488733963048 9.12080400458364 8.94926463243397 8.73387611910792 8.85424029363427 8.61378434799156 8.74037877996483 8.79939493622374 8.609198461635 8.89173618015367 8.57979189685356 8.37394139803215 9.10685293427147 8.77819512794015 8.6450816422058 8.88987862679265 0.103810228604786 0.100452368892007 0.10112589645712 0.102979478009575 0.101496146261950 0.102167814552794 0.099216700829137 0.0982341981845798 0.105895193423042 0.103857402653640 0.110277271521304 0.101702951489503 0.0990146617412975 0.108006237487667 0.107094966929355 0.102039551474537 0.0998044915560948 0.106679158581589 0.102646703439930 1 1 - 645414 646209 645758.727 645092 651906 - gene protein_coding_gene FALSE TRUE AT1G02890.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G62130.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G24860.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G02480.1); similar to AAA-type ATPase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95244.2); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85040.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85038.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain SMAD/FHA; (InterPro:IPR008984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.112274678382427 1.32972553447076 0.210810879013043 1 0.214841888362188 17.6128043170741 0.112274678382427 0.0391375987357318
AT1G15080_at 3.87215031362774 3.43110638561746 3.75560054196808 3.69657819449046 3.89198732929247 3.87166139233001 4.05857442646764 4.03561976240787 3.43370306895065 3.79918316100149 3.2984869044311 3.43566472399637 3.36742878725121 3.46873535247191 3.70389753525763 3.47803779676811 3.30038481892287 3.49389688539377 3.70726205381127 0.224636294211953 0.207993962501907 0.211877316750878 0.212052778114708 0.212734578211651 0.211044108175721 0.218230782014335 0.210621872078817 0.221640365810736 0.212225278041304 0.207993962501907 0.212833488035893 0.217288532107662 0.212942365175233 0.212561679504148 0.211681955343671 0.222545461277835 0.207993962501907 0.215959781281308 1 1|0 +|/ 5188554 5189218 5188881 5187621 5189668 + gene protein_coding_gene FALSE TRUE AT1G15080.1 ATPAP2 (PHOSPHATIDIC ACID PHOSPHATASE 2); phosphatidate phosphatase Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. Identical to Lipid phosphate phosphatase 2 (EC 3.1.3.-) (AtLPP2) (Phosphatidic acid phosphatase 2) (AtPAP2) (Prenyl diphosphate phosphatase) (LPP2) [Arabidopsis Thaliana] (GB:Q9XI60); similar to LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) [Arabidopsis thaliana] (TAIR:AT3G02600.5); similar to phosphatidic acid phosphatase beta [Vigna unguiculata] (GB:AAF89745.3); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) -0.124402675768051 -1.32944295147968 0.210900980115415 1 0.214518346013798 7.37167614084993 -0.124402675768051 0.0771877042658907
AT3G18190_at 7.77789945256893 7.84209243107698 7.19275914556205 7.59892615602362 7.47431923630764 7.49071258103542 7.51194114413738 7.82285739256291 7.09539287152223 7.34782817304578 7.42477076447796 7.57750568230348 6.89206836464969 7.15998539874165 7.62577873757219 7.03171840870412 7.01999471510346 7.07929535526168 7.11445462428636 0.150794519745523 0.155159430656691 0.156238267590866 0.150469940079553 0.157866292421360 0.163675589638577 0.167356401110642 0.152367893586694 0.159642734743221 0.159460210464093 0.148364938817303 0.158204607848823 0.148364938817303 0.155315679586898 0.148411783389383 0.148364938817303 0.154619592273777 0.153738340715249 0.152837590234032 3 3 + 6233249 6233752 6233506 6232132 6234066 + gene protein_coding_gene FALSE TRUE AT3G18190.1 chaperonin, putative similar to T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G24510.1); similar to cytosolic chaperonin delta-subunit [Glycine max] (GB:CAE47772.1); similar to cytosolic chaperonin, delta-subunit [Glycine max] (GB:CAA09989.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus tauri] (GB:CAL53373.1); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, delta subunit; (InterPro:IPR012717) -0.129510268310357 -1.32910745523589 0.211007993808659 1 0.214134283091052 14.7950792263943 -0.129510268310357 0.0892583065823905
AT2G18240_at 5.61702056084388 5.94399836557721 5.38390385955463 5.40329944377469 6.68231405307878 6.0276780428911 5.7147805143942 5.97423899610992 4.07083239507517 4.77931719898634 4.67985748409598 4.51204504081846 4.81470830302706 5.55330795131232 3.94815477054354 4.85815960523557 4.70264343120426 4.22208691224137 4.40291318812579 0.243254602496828 0.250088409308634 0.257411818849990 0.24799032607221 0.248785602556879 0.253117521186401 0.252373133809928 0.255674142745055 0.248238191986222 0.244384581235701 0.245677911787423 0.243444573248804 0.244937309754522 0.257399625374919 0.255438904919682 0.243254602496828 0.253790716474247 0.262896884631343 0.250251012053725 2 2 + 7942652 7943497 7943009.636 7942367 7943803 + gene protein_coding_gene FALSE TRUE AT2G18240.1|AT2G18240.2 RER1 protein, putative similar to ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) [Arabidopsis thaliana] (TAIR:AT2G21600.1); similar to putative endoplasmatic reticulum retrieval protein Rer1B [Oryza sativa (japonica cultivar-group)] (GB:BAD53619.1); similar to Os06g0708300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058533.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.152736041920444 1.32907786127593 0.211017435586073 1 0.214100408332509 10.3829332452142 0.152736041920444 0.134399836416069
AT4G22100_at 0.2484208600278 0.617779621681805 0.56000708772156 0.892036410847266 0.925573530510758 0.77376809848071 0.55320244755395 0.830385506074138 0.523504295180885 0.693913766896984 0.566284683641346 0.947642938301043 0.631080515758497 0.600596194988108 0.468350818615609 0.559182765271325 0.783347920497915 0.339642639661993 0.482437548095528 0.216927567435975 0.213759940786314 0.216537303655124 0.221709120954809 0.212120868714467 0.212178439515868 0.212716160738389 0.223962827564955 0.225100617315377 0.219466187197838 0.221734413951938 0.216312533555279 0.216728615936875 0.217513763878985 0.232091384780342 0.214214795158033 0.220764503993297 0.214491235551424 0.214690598874511 4 0|4 /|- 11707389 11708401 11707676.375 11707382 11709944 - gene protein_coding_gene FALSE TRUE AT4G22100.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G60090.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G45191.2); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.135398347961582 1.32888860090727 0.211077826234405 1 0.213883783685016 1.26446399352047 0.135398347961582 0.101873901943581
AT3G59400_at 10.4258233907559 10.5831886966813 10.2247733435677 10.302654788242 10.0644939691911 10.5815384063626 11.1163330479796 11.7182867921518 11.5526230973179 11.5527279944532 12.1443526728956 12.1138917605706 11.9233213316434 12.0790345081097 11.8060505524730 12.1226830054367 11.4404085848304 11.4545494446223 11.4865149601266 0.0785573446749814 0.0773052769772862 0.0808446882214592 0.0757213912758125 0.0784517754889339 0.080982956308467 0.0772879553650604 0.079946937938475 0.0797515274196025 0.0788172566982419 0.0760143969183319 0.0757213912758125 0.0773151469294059 0.0785497966515918 0.0759892724664351 0.076017570182524 0.0817377120107073 0.0826759596354239 0.0785975030810199 3 3 - 21959967 21960406 21960150 21959694 21960687 - gene protein_coding_gene FALSE TRUE AT3G59400.1 GUN4 (Genomes uncoupled 4) GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis. Identical to Tetrapyrrole-binding protein, chloroplast precursor (Genomes uncoupled 4) (GUN4) [Arabidopsis Thaliana] (GB:Q9LX31;GB:Q8VZR4); similar to Os11g0267000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067668.1); similar to GUN4-like [Crocosphaera watsonii WH 8501] (GB:ZP_00516280.1); contains InterPro domain GUN4-like; (InterPro:IPR008629) -0.156314194888916 -1.32881807197299 0.211100334796823 1 0.21380306280261 22.3352158043025 -0.156314194888916 0.140644860812921
AT1G21360_at 0.939861954230264 0.951106510092264 1.14884168896835 1.02631579140972 1.11385119720786 1.14844126367940 0.670101841005292 0.993169264064326 0.839421347492805 1.19076661377279 0.754632272791792 0.827482436105179 1.11663601637229 0.759636892433986 0.746819535887448 0.880093078076246 0.718577543908457 1.00802266154325 0.478532063859244 0.182547673959919 0.178416199045319 0.182498929099650 0.183629060357829 0.183783467061903 0.180038754870572 0.182421634367005 0.181436701285963 0.195477870277583 0.179605947223931 0.193144909865898 0.182258852374807 0.184494095946697 0.184740210439537 0.182559633187539 0.182911963306353 0.183122496811458 0.203930860057117 0.178416199045319 1 1 + 7481409 7483000 7482154.727 7481353 7483425 + gene protein_coding_gene FALSE TRUE AT1G21360.1 GLTP2 (GLYCOLIPID TRANSFER PROTEIN 2) similar to GLTP3 (GLYCOLIPID TRANSFER PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT3G21260.2); similar to OSJNBa0006B20.21 [Oryza sativa (japonica cultivar-group)] (GB:CAD40826.2); similar to Os04g0438600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052865.1); similar to OJ000114_01.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE03120.3) 0.118025069616590 1.32830745590612 0.211263351626570 1 0.213218748116715 1.84282497033957 0.118025069616590 0.0601244972198377
AT2G35670_at 1.1525147615622 0.870492906739949 0.882305130857348 1.07590187393390 1.32011086445955 0.792317716890772 0.890849329787176 1.11052548557179 0.989883079305986 1.25349951527355 1.20015194789498 0.982056599585407 1.17205502204055 0.830022908817336 1.02327994316936 1.12065287926699 0.98074316824517 1.15827291552082 1.81937427877580 0.179259738922809 0.178566204633139 0.184527439969462 0.186249823960256 0.183579067032502 0.188878485981999 0.180179495506797 0.179818923652284 0.182437556013064 0.188123921857848 0.183114762615916 0.178762213033679 0.178102858058317 0.182098250463429 0.178997270670426 0.178473237270242 0.187394387590559 0.185484884375336 0.192580920933665 2 2|0 +|/ 15002548 15003580 15003163.5 14999644 15003835 + gene protein_coding_gene FALSE TRUE AT2G35670.1 FIS2 (FERTILIZATION INDEPENDENT SEED 2); transcription factor negative regulator of seed development in the absence of pollination. Identical to Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 (FIS2) [Arabidopsis Thaliana] (GB:Q9ZNT9;GB:Q9ZQP0); similar to VRN2 (REDUCED VERNALIZATION RESPONSE 2) [Arabidopsis thaliana] (TAIR:AT4G16845.2); similar to polycomb group protein EMF2 [Eschscholzia californica] (GB:ABD98791.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.142142296215378 -1.32823686582514 0.211285896051457 1 0.213137981902997 2.21820561581835 -0.142142296215378 0.115291199749458
AT2G21450_at 0.662963390561709 1.15525229985330 1.10130807315826 0.971278750998284 0.553384515117667 0.93387846966528 0.806652098902704 1.05770574428419 1.09850597863729 0.528184534431139 0.60330312660124 0.25755413356761 0.568527222100522 0.58391314145677 0.773168917556726 0.585844368226713 0.773383766065093 1.03168189433727 1.08506255199718 0.186465973419496 0.185056708020790 0.182220593932317 0.188411687804239 0.182455736750786 0.183465495857086 0.194229076830175 0.188935520559678 0.197095292169169 0.192403088116104 0.185663330970758 0.188175114406100 0.184772698978254 0.182220593932317 0.184486696131922 0.182220593932317 0.19118410519432 0.182220593932317 0.183476726475827 2 2 - 9186758 9187251 9186988.182 9186490 9189436 - gene protein_coding_gene FALSE TRUE AT2G21450.1 CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase similar to DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1), ATP binding / DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G16390.1); similar to Os06g0255700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057310.1); similar to Os07g0434500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059497.1); similar to putative SNF2 domain/helicase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84084.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.143713274140908 -1.32817504525275 0.211305641380928 1 0.213067251853647 1.68084779761477 -0.143713274140908 0.118268598091557
AT1G23380_at 1.95399716185121 2.23767770347656 2.14286829007261 2.16348912530289 1.93129253842747 2.04129508629310 2.05361886079874 2.22234540632646 2.27266089902954 2.29421647138740 2.05909784165874 2.19127024666020 2.17520387593013 2.12328831716878 2.28846200457812 1.90697803829146 1.70808523080166 2.2067857261309 2.2471851933282 0.148621297287525 0.153366030816239 0.149736732487365 0.153267870881479 0.147596941099695 0.148774399179921 0.148431679801857 0.158023354508011 0.156777757135586 0.150296309848186 0.148612926082817 0.149533380438970 0.151836934637897 0.155214246932241 0.151560749170706 0.147583985806976 0.160147011477937 0.152871027899470 0.150141285205918 1 1 - 8297517 8302442 8300279.947 8297280 8302640 - gene protein_coding_gene FALSE TRUE AT1G23380.1|AT1G23380.2 KNAT6 (Knotted-like Arabidopsis thaliana 6); DNA binding / transcription factor homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants. similar to KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G70510.1); similar to PKn1 [Ipomoea nil] (GB:BAA31698.1); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain KNOX1; (InterPro:IPR005540) -0.118065650425885 -1.32805969966504 0.211342486533403 1 0.212935288995384 4.2701983206024 -0.118065650425885 0.0603137278980927
AT4G14090_at 2.77399998906949 2.62483609301871 2.42398058816953 2.62320185798784 2.53060531395877 2.16950393009778 2.77292833154531 2.68856827571945 2.66632691859188 2.25598583638627 2.55159652867093 2.58753325224926 2.48470348455253 2.61662115643091 2.29607830462546 2.17423753856769 2.72791521905691 2.56003281498653 2.48783688325316 0.210423820627554 0.212012010194677 0.217589779028577 0.214679085085797 0.229026893066867 0.216819315117941 0.219581064768538 0.214473053503268 0.209569828788035 0.209569828788035 0.209816365901491 0.213338870406861 0.212248859837415 0.209569828788035 0.221226581058959 0.209569828788035 0.214612996120125 0.212532848130612 0.218931744107842 4 4 - 8122465 8122963 8122759.545 8122183 8123830 - gene protein_coding_gene FALSE TRUE AT4G14090.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. similar to IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15550.1); similar to glucosyltransferase NTGT2 [Nicotiana tabacum] (GB:BAB88935.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.124235170901334 -1.32723047184434 0.211607525158275 1 0.211986833874145 5.06089788084734 -0.124235170901334 0.0772858739316378
AT1G04945_at 3.48859370312858 3.80859507301219 3.93504263575731 3.80693519808186 3.57949697699765 3.78896575637585 3.91480390816572 4.0049419251869 2.61182896937756 2.82049497130483 2.41730531418566 2.82416915074004 2.97316424706464 2.7082126600254 2.85571270425301 3.01708545293426 3.39534838882683 2.97197277089864 2.44206339754420 0.198417530129667 0.202566836845219 0.198132879532750 0.200896578028226 0.19805458230653 0.20445261712891 0.203672702347121 0.201155828703946 0.208782475071914 0.205748973597389 0.205227633569359 0.198846930778565 0.208192863118063 0.19805458230653 0.198579888382104 0.199475831662032 0.204334653084346 0.205920378320962 0.202393513982879 1 1 + 1402141 1402501 1402327.091 1400907 1403111 + gene protein_coding_gene FALSE TRUE AT1G04945.1|AT1G04945.2 similar to Os01g0962500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045479.1); similar to PREDICTED: similar to CG1463-PA [Tribolium castaneum] (GB:XP_969070.1); contains InterPro domain Zinc finger, HIT-type; (InterPro:IPR007529) 0.121976023068510 1.32719029043649 0.211620374945704 1 0.211940885643329 6.55100545485072 0.121976023068510 0.0715229762682919
AT2G31940_at 0.556288766115778 0.421800091430949 0.263884836577795 0.700671154067598 0.235965183643991 0.403928531759403 0.418233152675143 0.614287844759343 0.27193689938052 0.192880492895861 0.324357410937948 0.33150176723927 0.767418108136369 0.569787120942841 0.8382821213992 0.137891429415629 0.74276919337797 0.454513158863005 0.0128279102031858 0.181665696794587 0.180703256284570 0.196011500766892 0.189967965403014 0.185955758223228 0.182889483007782 0.182446460559484 0.180703256284570 0.189065921191605 0.189970930128107 0.186889592365258 0.187560238449033 0.198926721486598 0.190962604576508 0.18179939637135 0.181634504487907 0.185558282671970 0.19158344985147 0.186125234774394 2 2 + 13587726 13587991 13587856.727 13587677 13588189 + gene protein_coding_gene FALSE TRUE AT2G31940.1 oxidoreductase/ transition metal ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19875.1); similar to Os09g0445600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063304.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77569.1); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) 0.1300299503647 1.32716008386283 0.211630035261502 1 0.211906344471247 0.791897514936526 0.1300299503647 0.0908361637939582
AT1G20410_at 4.09457877561802 3.85093078503014 3.78043157797769 3.50631493602302 3.54550372531002 3.72635446230603 3.55636013023684 3.73614905464414 3.20007005882080 3.38679224202949 3.6907014500741 3.88553995717502 3.46497910547523 3.75961660276015 3.97093309287966 3.48387406712841 3.89344526242938 3.75330842393359 3.37171727280061 0.211694019480723 0.206270322584186 0.201967214476567 0.205621106074944 0.206940273451585 0.213100965311232 0.202127857497131 0.222124371981200 0.212613241569819 0.205337708158741 0.205273723825708 0.206592467403444 0.20450387986198 0.202550896595866 0.204816890241459 0.205279046917316 0.226057796713081 0.224637329729451 0.201967214476567 1 1|0 -|/ 7079217 7080683 7080027.714 7078888 7082537 - gene protein_coding_gene FALSE TRUE AT1G20410.1 similar to H0211B05.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67165.1); contains domain SUBFAMILY NOT NAMED (PTHR21568:SF5); contains domain Pseudouridine synthase (SSF55120); contains domain FAMILY NOT NAMED (PTHR21568) 0.124209854851775 1.32688873339107 0.211716831740758 1 0.211596080223747 7.25324106578436 0.124209854851775 0.0773024399939639
AT1G73860_at 1.24660294636592 0.899582215623277 1.45858747336097 1.17455395955907 0.862829447457556 1.25581736804561 1.29455754519085 0.941731679054377 1.22843766322136 1.17211569640946 1.63466364457557 0.909227600952454 1.28912101454701 1.44686107353926 1.47141157610924 1.31613069455610 1.76130203405848 1.16876339392699 1.1339035745267 0.192309471405407 0.195989541553646 0.193795283709406 0.197448290348423 0.19925348303479 0.192309471405407 0.196360706583457 0.192372952319448 0.197903567309709 0.207772399645164 0.201347177824177 0.195751830885170 0.192309471405407 0.192309471405407 0.196173565957206 0.192309471405407 0.192309471405407 0.196941124605981 0.197581103928060 1 0|1 /|- 27775272 27775779 27775512 27774647 27780518 - gene protein_coding_gene FALSE TRUE AT1G73860.1 microtubule motor similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G63640.2); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G18410.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G41310.1); similar to putative Carboxy-terminal kinesin 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD26164.1); similar to Putative Kinesin motor protein-related [Brassica oleracea] (GB:AAW81733.1); similar to Os01g0744000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044222.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) 0.144430641597247 1.32674247283326 0.211763628075754 1 0.211428863135202 2.41820154954169 0.144430641597247 0.119898788196448
AT1G60570_at 2.93181867657860 3.46151887309148 3.45673823623667 3.44459773451404 2.90172873236273 3.23602324335011 2.91852515089269 3.43217133352218 3.72005730389705 3.37479826619668 3.44250685918389 2.93345624611114 3.38624908925292 3.35177675345569 3.10460614616217 3.19280079362002 3.25317510419177 3.45649139725872 3.85636330561138 0.189023266044560 0.183112987027668 0.195648326540607 0.192999073315293 0.188187000282516 0.198598608563889 0.191321636072724 0.197974942241184 0.193483089448733 0.188775828585418 0.196034625473606 0.188464611160711 0.185374082234950 0.183076317628227 0.191359496563174 0.184400905259609 0.196651431262748 0.187104583532534 0.191056801056261 1 1 + 22316089 22316620 22316427.818 22315501 22316646 + gene protein_coding_gene FALSE TRUE AT1G60570.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G19930.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.155755007576257 -1.32628095259311 0.211911348291743 1 0.210901299676053 6.68065979284668 -0.155755007576257 0.140197233428267
AT4G38170_at 3.70818951397654 3.93187387123049 4.0335000677306 3.99416651260474 3.89766789382392 3.39438013071647 3.59327633039539 3.61828572520056 2.99540744587742 3.46889231421887 3.36461035003593 3.56330482935467 3.33862579735351 3.58035198040769 3.50894794700205 3.53537169215749 3.33913880257547 3.34171473819801 3.43343144441919 0.259934035711072 0.252327284613909 0.251643794269748 0.258520080092043 0.248886081961484 0.258099972563862 0.248828351776619 0.261874968036531 0.254431616409048 0.252175826586721 0.249926215690870 0.247966514275131 0.249514484139669 0.253245883164856 0.252898742725803 0.259934325206784 0.261509451057490 0.249549821738528 0.256406914733004 4 4|0 +|/ 17905851 17906382 17906128.4 17904552 17906815 + gene protein_coding_gene FALSE TRUE AT4G38170.1 FRS9 (FAR1-related sequence 9); zinc ion binding similar to FRS5 (FAR1-RELATED SEQUENCE 5), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G38180.1); similar to FAR1; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE89491.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.132143411657649 1.32612050917487 0.211962721827908 1 0.210717926951764 7.14429350669688 0.132143411657649 0.0956517857290704
AT1G67430_at 11.0805605730494 10.9850091676259 10.6433085246582 10.6124096784472 10.6217539372457 10.4601370735304 10.8421836497852 10.8289731253698 10.2236564651399 10.6320378807148 10.8247714344953 11.1046008476772 10.5663202295114 10.5336111687212 11.1283228192325 10.4161899664722 10.2703920075051 10.0790239873264 10.6052449371742 0.0857716568027147 0.0845007034223462 0.0891336765356932 0.0866211754484229 0.0845724532752495 0.0913420378529595 0.0861756873933225 0.0865013118165894 0.0909126875410312 0.0843794718513339 0.085024474708734 0.0854071585659168 0.0843794718513339 0.0881144127412224 0.0873593454757883 0.0850858030406565 0.0913845682193178 0.0869903205468184 0.0846652279313125 1 1|0 +|/ 25265995 25266969 25266616 25265822 25267452 + gene protein_coding_gene FALSE TRUE AT1G67430.1 60S ribosomal protein L17 (RPL17B) Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Petunia x hybrida] (GB:AAL09401.1); contains InterPro domain Ribosomal protein L22/L17; (InterPro:IPR001063); contains InterPro domain Ribosomal protein L22/L17, eukaryotic and archaeal form; (InterPro:IPR005721) -0.110677514439584 -1.32601662899786 0.2119959894518 1 0.210599209305839 21.3104838755276 -0.110677514439584 0.033007353632725
AT3G14820_at 0.783585185746924 0.530512621479783 0.820430043946925 1.17769363804750 0.961434167119266 1.07168486925742 0.810477622724421 0.788312136333097 0.767218575078545 1.46909532617647 1.17337175735487 1.05310018059311 1.02879006120668 1.02474970795272 0.94794027783976 0.754363982002212 0.599306219748856 0.807920402069927 0.626534316446135 0.237667956570211 0.237667956570211 0.240979304847788 0.238646463815364 0.237667956570211 0.244364087285177 0.241776658596112 0.238559118551086 0.248486418974336 0.240747562958504 0.250270202140144 0.240176412425165 0.237667956570211 0.243000391136706 0.242997070461569 0.244231110720822 0.237667956570211 0.248848312384134 0.245728902170395 3 3 + 4979489 4980157 4979826 4978954 4980248 + gene protein_coding_gene FALSE TRUE AT3G14820.1 GDSL-motif lipase/hydrolase family protein similar to carboxylic ester hydrolase/ lipase [Arabidopsis thaliana] (TAIR:AT1G59406.1); similar to carboxylic ester hydrolase/ lipase [Arabidopsis thaliana] (TAIR:AT1G59030.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88960.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.124499436192011 1.32599486726458 0.212002959192035 1 0.210574340112171 1.80700406699678 0.124499436192011 0.0782255941119147
AT3G27070_at 1.78514064560973 1.88158686306687 2.29381444238360 2.26018148479651 1.64265380798767 2.22047631707649 1.91556100361575 1.54344426010342 2.24361463633725 2.14898782877359 2.25543837476765 2.41427764505449 2.13170253903268 2.44175655787426 2.06473205040809 2.09604841968045 2.82059147855295 1.85277038501463 2.48778677192353 0.213917049972278 0.213446984181866 0.222824244200151 0.227179154861439 0.221030696756950 0.213452721710686 0.220886871048181 0.218214177442250 0.223587929320812 0.216050946100344 0.213446984181866 0.219778288876984 0.222081901908282 0.225115831966905 0.217351245732204 0.221927643317054 0.219116985070319 0.228954161449049 0.215919379926618 3 3|0 -|/ 9984427 9985251 9984937.556 9984241 9985981 - gene protein_coding_gene FALSE TRUE AT3G27070.1 TOM20-1 (TRANSLOCASE OUTER MEMBRANE 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins Identical to Mitochondrial import receptor subunit TOM20-1 (Translocase of outer membrane 20 kDa subunit 1) (TOM20-1) [Arabidopsis Thaliana] (GB:P82872;GB:Q9LSC9); similar to TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3), protein translocase [Arabidopsis thaliana] (TAIR:AT3G27080.1); similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) (GB:P92792); contains InterPro domain Plant specific mitochondrial import receptor subunit TOM20; (InterPro:IPR010547); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.144524961124408 1.3259109396535 0.212029840882534 1 0.210478430752700 4.21942123323481 0.144524961124408 0.120242830178256
AT1G26260_at 3.30191523462796 3.49607954000510 2.64640214229404 2.96938144830154 3.01716551750093 2.6768145933565 2.43350378938776 2.54984044398272 2.93406380768917 2.49901875597983 2.94393706608593 2.26709633703725 2.56623039899614 2.71739827828196 2.6933977560698 2.98455849893181 2.44631379579950 2.55256627607772 2.93012534603771 0.23341688363679 0.215490472280349 0.214739651964325 0.218583458707965 0.212912715023662 0.217833023058730 0.215935862363295 0.212912715023662 0.219002756836573 0.220181456427134 0.218214483404324 0.217446862486720 0.220060689096594 0.214713235225186 0.226863538157687 0.220453304817942 0.221378832375319 0.214369012348623 0.222322548036201 1 1 + 9087900 9088880 9088485.364 9086840 9089365 + gene protein_coding_gene FALSE TRUE AT1G26260.1|AT1G26260.2|AT1G26260.3 basic helix-loop-helix (bHLH) family protein|DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.3); similar to TA1 protein [Oryza sativa (japonica cultivar-group)] (GB:CAE00874.1); similar to Os06g0275600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057380.1); similar to Os09g0474100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063455.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.129596247814928 -1.32587742401077 0.212040576599503 1 0.210440131505001 5.60347447408819 -0.129596247814928 0.0901527400550137
AT3G45230_at 4.43892483956377 4.87092220131059 3.89512609836332 4.0312205356958 4.50592381785594 4.65732335866859 5.31023791546861 5.18796593309362 5.93419210506552 4.69474598037519 6.51774647546842 6.28744919337502 6.0576270250332 5.95952661612804 5.61558980656971 5.46719873278339 4.87951875384997 4.93462620499601 5.24157564785417 0.201353874801923 0.199549678753594 0.220797345702727 0.206599506091616 0.204954739541157 0.223943794338743 0.215066212483875 0.209474916854780 0.200243313120305 0.210418765103366 0.203472711369620 0.202424010585983 0.201072142484147 0.205642801260789 0.214757346550882 0.202936662173158 0.200748398461618 0.218012203763414 0.209829156449512 3 3 + 16580135 16580608 16580374.364 16580036 16580812 + gene protein_coding_gene FALSE TRUE AT3G45230.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60630.1); similar to Os03g0852400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051923.1); similar to glycoside hydrolase, family 6 [Acidothermus cellulolyticus 11B] (GB:YP_872374.1) -0.127437581559699 -1.32564320930722 0.212115612675685 1 0.210172506795866 10.1147463852311 -0.127437581559699 0.0853101001372525
AT3G16320_at 1.97295941745288 1.89178677503421 2.20690249799 2.24096295554005 1.98386618091841 2.11092658679069 2.07434617564123 2.06529723627026 2.05384431416571 2.38120113874004 2.53623418033569 2.02156537585497 2.26712815972598 2.14446821593537 2.69166530784966 1.91899591535548 2.26888940104133 1.98504890288748 1.99909095421213 0.182833740815097 0.186178070098573 0.188753679079536 0.182902281320864 0.183976147965366 0.184511953414598 0.185989923772994 0.186846386578572 0.188389183444306 0.193175791446812 0.190210823898479 0.18556367960501 0.184858864823218 0.18918421548309 0.194161291830903 0.183262264130275 0.191396461228453 0.192991483545791 0.197447658589244 3 3|0 +|/ 5533392 5534180 5533831.2 5529368 5534641 + gene protein_coding_gene FALSE TRUE AT3G16320.1 binding similar to HBT (HOBBIT), binding [Arabidopsis thaliana] (TAIR:AT2G20000.1); similar to putative HOBBIT [Oryza sativa (japonica cultivar-group)] (GB:BAD35375.1); similar to Os06g0622500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058099.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.109552225438713 1.32559085683309 0.212132387992075 1 0.210112690920312 4.25536176224432 0.109552225438713 0.0267957378128012
AT4G31810_at 2.93755823614982 2.94834966208331 3.24610135712730 2.86004295655404 2.25082671680021 2.48249013672085 2.93895581005398 2.79337804217968 2.17829237145034 2.42097607664204 2.34296827853065 2.47532292952366 2.06851168077803 1.70116600699505 1.88527106927929 2.24189266321670 2.64790811982709 2.34907281258323 2.21393523774398 0.223948325733093 0.208410988929387 0.210113978370686 0.215385641472610 0.205492933464656 0.208604174672952 0.216300327828856 0.212261856742339 0.207384061529018 0.206690643629214 0.214022777917068 0.206798974484491 0.205640635903628 0.206718446524408 0.212435594355700 0.209893629853924 0.20802133992912 0.211038221110156 0.213558006378856 4 4|0 -|/ 15387380 15388322 15387798.5 15387126 15390402 - gene protein_coding_gene FALSE TRUE AT4G31810.1 enoyl-CoA hydratase/isomerase family protein similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT3G60510.1); similar to putative enoyl-CoA-hydratase [Oryza sativa (japonica cultivar-group)] (GB:AAG13484.1); similar to Enoyl-CoA hydratase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47969.1); similar to Os10g0552900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065335.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) -0.125874423001586 -1.32445538756429 0.212496496053517 1 0.208815754736250 5.0497539098939 -0.125874423001586 0.0819077742416305
AT1G64590_at 0.935236665802441 1.63334738142248 1.62690058164196 1.29862646932485 0.953237043223815 1.17917696064221 1.02457299979421 1.13231992655732 1.09014094731365 1.14367000460662 0.807573083121983 1.29073878826988 1.77443443707962 1.30831109119788 1.41763773405496 0.9722721247183 1.8158320855794 1.37703306818862 1.11829393476146 0.228290177173819 0.225796933615972 0.225796933615972 0.229484214104163 0.227330808403738 0.225796933615972 0.229075978936245 0.227205894791040 0.226809848381456 0.234398914149668 0.237457886728293 0.227089685542504 0.228415961423662 0.229794634206121 0.225796933615972 0.226044015533767 0.230797269783748 0.230215908470386 0.231699382732346 1 0|1 /|+ 23997971 23998786 23998454.1 23997196 23999172 + gene protein_coding_gene FALSE TRUE AT1G64590.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G24050.1); similar to Os06g0129100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056678.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE79697.1); similar to Os03g0115700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048754.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.155613388139926 1.32430049836594 0.212546203908992 1 0.208638900087416 2.45435092709461 0.155613388139926 0.140353702857178
AT1G69250_at 6.22780239607739 6.75508888547347 6.16660782022251 6.04457448374712 6.15315200988008 5.87580900280668 5.9948094034232 6.05215255150723 5.19446636082547 4.94801880371295 5.14925589306054 5.61073356846226 4.98095844834707 4.96440522094279 5.33573854872053 5.16340593426188 4.77587943381074 5.059160719254 5.47595367462994 0.238573705155191 0.242081557785815 0.234786460450834 0.245619318109900 0.230740570280528 0.241067589017846 0.232525119786560 0.250180328477894 0.235207247304386 0.239166423995468 0.232335266132700 0.232981400676126 0.232638861317619 0.234510516686451 0.239506283660926 0.230740570280528 0.245826046313459 0.236223318617705 0.2362650868965 1 1|0 +|/ 26038025 26038503 26038288.25 26036490 26039167 + gene protein_coding_gene FALSE TRUE AT1G69250.1|AT1G69250.2 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G13730.1); similar to putative ras-GTPase-activating protein SH3-domain binding protein [Trifolium pratense] (GB:BAE71310.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G03640.1); similar to putative ras-GTPase-activating protein SH3-domain binding protein [Trifolium pratense] (GB:BAE71310.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.136815769410765 -1.32426187317653 0.212558601201443 1 0.208594799560181 11.3267938194323 -0.136815769410765 0.105709426430553
AT3G28420_at -0.0113144427295208 0.421042780710982 0.277582505685191 0.0966320349904467 0.597672750985088 0.298256010813747 0.216220937696317 0.468536358798058 0.791193878649133 0.308384820207821 0.248939495451459 0.445790492497466 0.335372435576475 0.149355116713413 1.01272279654984 0.508849530983866 0.330861895450173 0.0520066587528927 1.00912831583643 0.239360175757934 0.233804924011727 0.238108502199186 0.237458230944747 0.233804924011727 0.237295667366957 0.237142816784920 0.233804924011727 0.239984466281575 0.236406749580438 0.239529474591506 0.233804924011727 0.238164023462737 0.240521199209271 0.233804924011727 0.237779746158408 0.237433795556620 0.243680682466891 0.243505937122958 3 3 - 10655934 10656484 10656302.909 10655707 10656625 - gene protein_coding_gene FALSE TRUE AT3G28420.1 unknown protein -0.136750309242261 -1.32372470766689 0.212731073771705 1 0.207981581074431 0.839773437607827 -0.136750309242261 0.105689414795804
AT4G25200_at 2.05310335865134 1.25391176169396 2.00792872191504 1.95764709011305 1.46408217690557 1.59706807953190 1.58923559413143 1.72684263205685 2.32216757497218 1.80817188170526 2.20411852229846 2.21342584534084 2.20486734363307 2.23585315692513 2.09617510402366 1.87582378375565 2.22028279697478 2.46826175339665 1.80170408123472 0.174897986882680 0.173033182771783 0.173516344182406 0.169719989087635 0.167700202147952 0.168870402928493 0.17213187296776 0.169923396068497 0.174490840325528 0.177140035560740 0.168403230588673 0.169177414395197 0.174793176934198 0.181770533514477 0.172861362521156 0.175661349184099 0.179593983079597 0.174365115833545 0.188271515423953 4 4|0 +|/ 12917208 12917634 12917468.667 12917027 12918063 + gene protein_coding_gene FALSE TRUE AT4G25200.1 ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial Identical to Heat shock 22 kDa protein, mitochondrial precursor (HSP23.6) [Arabidopsis Thaliana] (GB:Q96331); similar to 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) [Arabidopsis thaliana] (TAIR:AT5G51440.1); similar to Heat shock 22 kDa protein, mitochondrial precursor (GB:P46254); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.156705686402902 1.32304936873090 0.212948074641598 1 0.207210873264436 3.78982686900702 0.156705686402902 0.142479426336193
AT1G29710_at 2.2025042342258 3.02216056672301 2.36700859954970 2.20333893727426 2.34584665707448 2.46824725222267 2.38792024081204 3.13691319484795 2.0847663244951 2.53658386936269 2.28061667872891 2.47006718841777 2.30578424312062 2.34809688956259 2.10369343187263 2.20614548578208 2.66858459335687 2.10895223493182 2.42853460623709 0.241011696416268 0.238192304706400 0.243797241788322 0.241733587704901 0.235869869264513 0.239077721608978 0.240235802325040 0.237286710877425 0.238760026597753 0.241352939485105 0.235932487955779 0.238469155372042 0.233861655523526 0.233847286311302 0.236531140787663 0.233847286311302 0.246864121292285 0.250830048454922 0.236963307585955 1 1 + 10388498 10389053 10388765.545 10387659 10389086 + gene protein_coding_gene FALSE TRUE AT1G29710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G34370.1); similar to Putative selenium-binding protein, related [Solanum demissum] (GB:AAT66765.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.189866602215945 -1.32291834126102 0.212990197705456 1 0.207061374456809 4.84746955696788 -0.189866602215945 0.195375313535166
AT1G18530_at 1.2896001039771 0.887524317298007 1.56922333742252 1.44237150862577 1.33650929985957 1.38808820184746 1.44020189844042 1.52364150582814 1.41419112441175 1.40712839132093 1.65034855363639 1.05826320160121 1.7475021173306 1.78020898200972 1.4742211156906 1.45958912307020 1.42234331501323 1.29050011088029 1.34417110763328 0.167807675079933 0.172953411082471 0.176120915486719 0.172702860546469 0.176366421770701 0.171231198654725 0.174169503922049 0.175475202004779 0.177552137491149 0.180468284340798 0.173494175336469 0.169482881411361 0.167807675079933 0.173394969634503 0.169793152373115 0.172064653031658 0.177701369136166 0.179402650176537 0.169479178235262 1 1 + 6376810 6377085 6376946.727 6376776 6377249 + gene protein_coding_gene FALSE TRUE AT1G18530.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G25600.1); similar to Os05g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056407.1); similar to Os01g0604500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043511.1); similar to EF-Hand type [Medicago truncatula] (GB:ABE85120.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.122840660500810 1.32239929716176 0.213157128901533 1 0.206469260984881 2.79657949134205 0.122840660500810 0.0749106598620359
AT1G69070_at 3.13880475400096 3.43144880194399 3.01027845751483 2.93210058043181 2.51177859483516 2.90289899416801 2.56269179271832 3.10800318336251 1.81061957728871 2.48359403865618 1.89429251671969 2.31704525505000 2.03868633531009 2.14692103908654 3.06086650172027 2.72077032472102 2.05608770558355 2.46109907915347 2.94203799253964 0.195712274984660 0.188334150412018 0.195230583441840 0.188334150412018 0.195415024576123 0.196880713584973 0.192232968417667 0.197325453917590 0.215364902760116 0.202230722483428 0.196732597753648 0.189903196391341 0.196541948812525 0.202884541376017 0.192508850904745 0.191567162626468 0.193006082661461 0.193061016317358 0.199015589775138 1 1 - 25971145 25971843 25971541.727 25970975 25975052 - gene protein_coding_gene FALSE TRUE AT1G69070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN08225.2); similar to Nop14-like family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97462.1); similar to Nop14-like protein [Medicago truncatula] (GB:ABE90856.1); contains InterPro domain Nop14-like protein; (InterPro:IPR007276) -0.148042875547875 -1.32233580349458 0.213177556674658 1 0.206396840047544 5.32427812695341 -0.148042875547875 0.127414779385271
AT1G16830_at 1.68319171021316 2.20312751580491 1.99381039354271 1.88953097371304 1.80554323753848 2.06278554712844 2.04861467053757 2.23633732955118 2.04820984876829 1.99820371707252 1.29377142961130 1.92243932760839 1.99056112885693 1.81011565289418 1.93348887758801 1.69449023954981 2.24827871527536 1.80171114179093 1.97287606312172 0.195359875335389 0.199197478237598 0.190666817566330 0.197960153320793 0.194543436371546 0.195111020113608 0.194454091521935 0.196281974406197 0.193880833574051 0.197074635642301 0.201253232962481 0.198390625245951 0.191514749541139 0.192159029705218 0.193275245395615 0.190628184211113 0.196851765145598 0.191837043344786 0.199737722367393 1 1 + 5762057 5762497 5762255.727 5758870 5762612 + gene protein_coding_gene FALSE TRUE AT1G16830.1 pentatricopeptide (PPR) repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78895.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP55169.2); similar to unknown protein [Oryza sativa] (GB:AAG46167.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.137236540360009 -1.32188085228148 0.213323975015518 1 0.205877993483135 3.91201114248754 -0.137236540360009 0.10704530390331
AT2G29880_at 2.46598720388400 2.39677296705619 2.69717708871893 3.07473208512732 2.35646586872320 2.24846825322469 2.48904733120920 2.46021399163376 2.7969328540937 2.99940165250027 2.41810255235713 2.69120608850863 2.54513184233756 2.63656661516414 2.19470922986748 2.29690780317783 2.32798757446931 2.83044223767731 2.82881970222015 0.178116413490685 0.187072300499623 0.179741771169214 0.187242354957569 0.190446047932679 0.191379469704471 0.180720207530118 0.1810496881286 0.185090446806317 0.181683194807342 0.180972484139044 0.178670716839109 0.185124511221227 0.185703171033489 0.182597765333628 0.184736084096380 0.187456290564358 0.178116413490685 0.189377885868915 2 2|0 +|/ 12749940 12750590 12750300.5 12749613 12750622 + gene protein_coding_gene FALSE TRUE AT2G29880.1 Identical to Hypothetical protein At2g29880 [Arabidopsis Thaliana] (GB:O82368); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27260.1) -0.120607104745185 -1.32178866719407 0.213353653320063 1 0.205772876748992 5.20744967163864 -0.120607104745185 0.0691857812125762
AT4G38470_at 8.35567565287229 8.45504641900565 8.2251472680823 8.12463573092304 8.82727066408456 8.61488810098034 7.9994489230272 7.73913831977853 8.02197629142708 8.38484663914385 8.39680180093528 8.46786990639151 8.04539366731491 7.97444891682053 8.20681991423259 8.42011294741702 8.21271242992034 8.1776736095838 8.5277719245704 0.164065311104198 0.169936730863478 0.162570412828887 0.165941043493402 0.166844213412435 0.171071522573312 0.163531421108994 0.165224483101163 0.169770554633159 0.167449782221240 0.171909026455990 0.165237492687830 0.174401596672604 0.168588730960253 0.162817938262175 0.164219862787637 0.165747765776235 0.162462635685348 0.160384032029069 4 4 + 18002265 18003521 18002930.909 17999426 18003675 + gene protein_coding_gene FALSE TRUE AT4G38470.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35780.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06436.1); similar to Protein kinase; Amino acid-binding ACT [Medicago truncatula] (GB:ABE89440.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06437.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.118427821521598 1.32170262332897 0.213381357573737 1 0.205674767354949 16.5672867685730 0.118427821521598 0.0630748240702274
AT4G13020_at 8.31072576176338 8.37167016572666 8.5933031496432 8.50994510618532 8.7901963232213 8.44026304683468 9.03429085099047 8.84111726035124 8.7843045290944 8.84234214622315 8.77693548849247 8.33324913802642 8.56285811532156 8.69121797441889 8.42319380620247 8.65552412532435 8.81851672019272 8.72905338460787 8.80529373629997 0.115515849300866 0.117341364299761 0.118290048642809 0.119969944855184 0.118942921798541 0.117331008186813 0.116626999092064 0.115955518406788 0.125154881384613 0.113808610396374 0.116040773743100 0.116920234832501 0.112905044387186 0.116558636675140 0.122507862935503 0.113909662433318 0.128233078574677 0.124301710509673 0.117331445979265 4 0|4 /|+ 7605916 7606700 7606328 7603108 7607152 + gene protein_coding_gene FALSE TRUE AT4G13020.1|AT4G13020.2|AT4G13020.3 MHK; kinase Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis. Identical to Serine/threonine-protein kinase MHK (EC 2.7.11.22) (MHK) [Arabidopsis Thaliana] (GB:P43294;GB:Q9C5D4;GB:Q9SV67); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G19110.2); similar to protein kinase (GB:AAA18854.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.121426156517988 -1.32153662613763 0.21343481343637 1 0.205485505792365 17.3286716570625 -0.121426156517988 0.0714428923126515
AT1G13300_at 2.47886976433502 2.63564403442758 2.54868009870970 2.64284677540739 2.11155158710593 2.67216575352927 2.18906772713265 2.42831245026018 2.67606157024115 2.94218187760119 2.05138931179815 1.94428923806590 2.65453415172543 2.49930557557609 2.09570761019483 2.16017205119356 2.79287231915362 2.68348829640879 2.47746040447614 0.173069189440348 0.177408093718314 0.173966911849115 0.180490995160290 0.174451549903390 0.180321857568711 0.175630712000792 0.181632133329269 0.173417030497248 0.176589157733061 0.172322626430197 0.172725846453992 0.173605341373124 0.173450759094209 0.177172415029833 0.170842779359626 0.173595660283322 0.180788174553396 0.174754990538178 1 1 + 4557874 4558550 4558302.273 4556889 4558705 + gene protein_coding_gene FALSE TRUE AT1G13300.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G25790.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os02g0325600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046702.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.138755285929533 -1.32151010485041 0.213443355074782 1 0.205455269110858 4.99278615888215 -0.138755285929533 0.110127481561095
AT2G16910_at 1.63488942916979 1.31864400141303 1.90905002235878 1.63735276274540 1.24378608603699 2.05628736853516 1.55789382115736 1.39244683504718 1.62900720552342 1.26422665629644 1.65683682586533 1.84527490505074 1.39012274391020 1.35052756321609 1.38797153070846 1.27183939405201 1.94873954959575 1.85702914269256 1.57515742350193 0.228242621683937 0.223038813894930 0.227034581830153 0.224774189449435 0.230341745161087 0.226221096176282 0.227134373819436 0.223038813894930 0.23057450288097 0.233707054811321 0.231683141632864 0.223038813894930 0.228238684192862 0.223038813894930 0.223038813894930 0.223038813894930 0.231067823596054 0.235678270998443 0.223038813894930 2 2 + 7340413 7341097 7340721.727 7338803 7341336 + gene protein_coding_gene FALSE TRUE AT2G16910.1 AMS (ABORTED MICROSPORES); DNA binding / transcription factor Sporophytic male sterile; MYC Transcription Factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G10610.1); similar to bHLH transcription factor [Brassica napus] (GB:CAD54298.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.167364741667353 1.32111589366027 0.213570350807036 1 0.205005882586628 3.13279702513812 0.167364741667353 0.160611287704462
AT1G09220_at 1.92595515474038 2.02653320190948 1.72522961214116 1.92740934385317 1.75387365899453 1.62570512272036 2.04249893370798 1.91006661189206 1.58076715968631 2.05421597851423 1.85268018401678 1.45770469494012 1.66975469374362 1.61051135977348 1.38655843934617 1.77389404342125 1.99104329108249 1.94715866712746 1.53012489877105 0.177690409365153 0.18241626708412 0.177690409365153 0.186054734000825 0.180935670715602 0.183247792549699 0.177690409365153 0.188124258157179 0.183746874160676 0.179434514226589 0.183923906369546 0.182770139567204 0.178281530972269 0.183464010674032 0.184139602212645 0.18037632453892 0.182380101552026 0.186904335873983 0.194481160759123 1 1 - 2977967 2978529 2978275.091 2977794 2978970 - gene protein_coding_gene FALSE TRUE AT1G09220.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G13410.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92397.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.114374274222140 -1.32055632127227 0.213750724799292 1 0.204368151573819 3.58359188033087 -0.114374274222140 0.0504412284856059
ATCG00640_at 10.5671077015682 10.7932151284265 10.6331145892439 10.8153130938200 10.4872060394599 10.6926908997830 10.8108853366464 11.1454518668504 11.3721215753277 11.1639557874921 11.8030393524533 11.8513096302821 11.6535586713535 11.7434436154427 11.7503747522572 11.8052246405066 11.2952979454992 11.6228287755720 11.2600439107322 0.132575271533271 0.134024267552125 0.13618492025255 0.135946374458792 0.132840612939669 0.135446544246950 0.128664834117485 0.132423172945512 0.138009779757152 0.135002010012014 0.131837643127582 0.128634150651335 0.126376068508660 0.143165050354404 0.124799867698548 0.129785024967108 0.129098627066325 0.141153130965184 0.124799867698548 C C + 67512 67653 67584.818 67488 67688 + gene protein_coding_gene FALSE TRUE ATCG00640.1 encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L33 (rpl33) [Arabidopsis Thaliana] (GB:P56796); similar to ribosomal protein L33 [Drimys granadensis] (GB:YP_784407.1); contains InterPro domain Ribosomal protein L33; (InterPro:IPR001705) 0.126588531136991 1.32038340432510 0.213806488665465 1 0.204171120635989 22.2211272973605 0.126588531136991 0.0845101699194377
AT3G44540_at 0.979286023167472 0.602833834709175 0.673841186309503 0.675264036983856 0.963340297188643 0.757114413427373 0.902454212830493 0.896922871321253 0.654467534185699 1.14495285018466 0.71149533291567 0.409530089580675 0.746680237258953 0.796046230158742 0.966996008808248 0.500199141660296 1.09611632343814 1.13389265356854 1.08641952295677 0.192882995182613 0.193591082165934 0.196609510047037 0.196322454756723 0.191200212448137 0.193516504963312 0.190369815539794 0.194278041440689 0.211405245702897 0.200100418845281 0.190331928437213 0.192476180210233 0.199265881816083 0.196630668951239 0.208344605260489 0.196280189014481 0.192778931802216 0.192548530699868 0.194286428208560 3 3 + 16137387 16138705 16138155.545 16135008 16138869 + gene protein_coding_gene FALSE TRUE AT3G44540.1|AT3G44540.2 oxidoreductase, acting on the CH-CH group of donors similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT3G44550.1); similar to oxidoreductase, acting on the CH-CH group of donors [Arabidopsis thaliana] (TAIR:AT3G44560.1); similar to acyl CoA reductase [Simmondsia chinensis] (GB:AAD38039.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120)|similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to acyl CoA reductase [Simmondsia chinensis] (GB:AAD38039.1); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) -0.122405692815902 -1.32033114699645 0.213823343452994 1 0.204111579362759 1.68491517846690 -0.122405692815902 0.0742882342998152
AT3G26360_at 3.48626213407695 4.12605834149006 3.49770116251603 3.79535977469648 3.84134674790754 3.09578083061459 3.85668157963014 4.18149804831483 3.41434387347546 3.47989316840885 3.40448911206152 3.75819036321545 3.27625382279807 3.64644388290423 3.6574437632111 3.25728112790334 3.58252540446972 3.19002304692968 3.55628125480978 0.222353094774545 0.216152551247529 0.214604517409856 0.224948283743803 0.214645907534249 0.225540731428525 0.224614813836286 0.214604517409856 0.223194646024901 0.219454845191993 0.216362474136444 0.220009907048073 0.217323788660615 0.214604517409856 0.220874501911272 0.217704560222064 0.224294264356943 0.225611383534733 0.214604517409856 3 3|0 -|/ 9656527 9657564 9657134.4 9656519 9657610 - gene protein_coding_gene FALSE TRUE AT3G26360.1 ribosomal protein-related similar to Os03g0694700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050971.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38492.1) -0.183501340202862 -1.319875977258 0.213970197652525 1 0.203593035149137 7.21262978457316 -0.183501340202862 0.186330465598543
AT3G08810_at 1.0910743545381 1.07209721917824 1.05095112905635 1.04119916374709 1.25713517373435 1.06346000171130 1.47016968084366 1.32070420273517 1.31346237972647 1.50498596714199 1.19650843865484 1.20578333408452 0.722772184305942 1.45475018177866 1.5406764787686 0.901811590569873 1.41454156036904 1.18980603990641 1.05836583064725 0.189033138372166 0.192365002318037 0.192215125909430 0.192815714164196 0.189033138372166 0.189033138372166 0.196154670958575 0.189033138372166 0.204336542272884 0.198128309025825 0.190843766113879 0.189033138372166 0.191110259570397 0.193614249688121 0.195558189748066 0.190457428492349 0.197749250421158 0.191422361805154 0.196434465660989 3 3 - 2675671 2676204 2675947.909 2675637 2676699 - gene protein_coding_gene FALSE TRUE AT3G08810.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.112132581856012 -1.31875035566664 0.214333720586103 1 0.202311228704369 2.41865017497302 -0.112132581856012 0.0424972483738382
AT4G02270_at 1.80225282854351 1.55843497543147 1.85642615385964 1.95143589940332 1.55939313694338 1.85557018346612 1.67807590379820 1.76242322452441 1.71605673961284 2.05659937375447 1.50624328142969 1.21283305732454 1.71355999531925 1.59513134045878 1.65700944631450 1.27184932086892 1.30607954185413 1.64289439491886 1.73177866745659 0.217721119559178 0.220546278804528 0.229505362933074 0.223264788118304 0.231945564122250 0.227793254806534 0.223797422128262 0.214705257105142 0.232592724407105 0.21760304917975 0.217078716617072 0.225480932302659 0.219926246475469 0.215708176266972 0.214194323742574 0.214739935672874 0.229490595243627 0.220780816105791 0.217728036620927 4 4 - 992387 992929 992634.818 992175 993038 - gene protein_coding_gene FALSE TRUE AT4G02270.1 pollen Ole e 1 allergen and extensin family protein similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT2G47540.1); similar to HyPRP1 [Gossypium hirsutum] (GB:ABG91751.1); similar to TonB box, N-terminal [Medicago truncatula] (GB:ABE84972.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.120600967976585 -1.31869424395393 0.214351855334624 1 0.202247351321339 3.41450735870578 -0.120600967976585 0.0699340662773813
AT3G43500_at 0.58197319934817 0.573649716604545 0.665476997587274 0.426460110804772 0.203249196154142 0.494097492230713 0.388095167817832 0.692356981728289 0.59541927482474 0.897315122278723 0.412866784099153 0.573294475485266 0.735556265584116 0.535205010583357 0.481943546926995 0.662609749361795 0.547705842148233 0.143751293870385 0.463421716605847 0.244874927119418 0.246783226999630 0.253451613505147 0.262791507252937 0.255718891348431 0.248423911363060 0.252032892748736 0.249290822602956 0.261016599779508 0.254041442291605 0.251839470604838 0.244874927119418 0.263148068736833 0.250938593525888 0.25363774420719 0.244874927119418 0.253040091288760 0.249973901046500 0.251155909975789 3 3 - 15411251 15411595 15411404.6 15411245 15411706 - gene protein_coding_gene FALSE TRUE AT3G43500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G42080.1) -0.126066617038087 -1.31819074981150 0.214514636176511 1 0.201674260627811 1.08500418723973 -0.126066617038087 0.0837781802025173
AT1G61520_at 14.3105998249975 14.4352019207645 14.4958113402026 14.5471318650554 14.3577227934476 14.5091543263259 14.4494540543126 14.5488138559352 14.6879130609058 15.0019339629337 15.1234462426677 15.1016760011450 15.1910506600883 14.8872841381105 15.0268933870746 14.9483496318211 14.9872606184288 15.0973670227356 14.9031478577541 0.0541180538610099 0.0533144732431814 0.052512612642487 0.0534289394497472 0.0544461879129427 0.0545190167305459 0.0542765641271563 0.0561727147827475 0.0639682890738077 0.0547983450853853 0.0594982827460123 0.0534423488929432 0.0549923576631748 0.0576972826192388 0.0574085158146371 0.0540406871135849 0.0550149764959666 0.0559427540856191 0.0537316575232971 1 1 + 22704222 22704778 22704542 22703675 22705048 + gene protein_coding_gene FALSE TRUE AT1G61520.1|AT1G61520.2 LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding|LHCA3 (Photosystem I light harvesting complex gene 3) PSI type III chlorophyll a/b-binding protein (Lhca3*1) similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to LHCA5 (Photosystem I light harvesting complex gene 5) [Arabidopsis thaliana] (TAIR:AT1G45474.2); similar to PSI type III chlorophyll a/b-binding protein (GB:AAA18206.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCA5 (Photosystem I light harvesting complex gene 5) [Arabidopsis thaliana] (TAIR:AT1G45474.2); similar to PSI type III chlorophyll a/b-binding protein (GB:AAA18206.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) 0.111261001408243 1.31790711961746 0.214606379289213 1 0.201351492669703 29.4116100426086 0.111261001408243 0.0390672035666192
AT1G23830_at 5.96109402632786 6.3056131528288 5.93773031556317 5.99720774169815 6.07479909336751 5.65721439350268 3.58351145894096 4.50360501484453 5.00787980674973 4.90687846004066 4.61259535563028 4.73027273654649 4.98608315083542 4.80715741881545 3.78304468634477 3.89709841135584 4.68354824112421 4.36367170500134 4.92502359454006 0.254038499169809 0.238096782431785 0.245958583151892 0.237226676669106 0.234070820233158 0.243260683106357 0.240503959446003 0.243061477193796 0.244552901353087 0.234033237665594 0.229656876100789 0.234744135037854 0.229856647185619 0.236540027550077 0.248152517774269 0.234938136263662 0.246205528843951 0.234839165582992 0.234336993006652 1 1 - 8423052 8423537 8423295 8422949 8424077 - gene protein_coding_gene FALSE TRUE AT1G23830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23840.1) 0.182310991113624 1.31738098572653 0.214776648250787 1 0.200752887338124 10.2173608581260 0.182310991113624 0.185029357524891
AT2G28600_at 3.39091239923289 4.07081788873142 2.88219466272454 3.20648178059922 3.40235825869804 3.88313476254968 3.78793786074967 3.82652567905657 2.98710554437282 2.76967465468976 2.80164111691212 3.27613404088956 2.92321271660635 2.97093127199141 3.73765078823754 2.88612462837139 2.88918761336564 2.95806982241269 3.11274743761603 0.237647419806637 0.232821055894938 0.238906347317179 0.228284868705613 0.227631577459234 0.258022082942638 0.235634279242002 0.231695272851586 0.23784391626865 0.227631577459234 0.228104357398408 0.227631577459234 0.227631577459234 0.238130562512522 0.233457064875023 0.227631577459234 0.235504236979705 0.237242141346137 0.234016247594180 2 2 + 12260851 12261645 12261239.909 12258861 12261900 + gene protein_coding_gene FALSE TRUE AT2G28600.1 ATP binding / ATP-dependent helicase/ nucleic acid binding similar to ATP binding / ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G14610.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_452893.1); similar to Os12g0147500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066154.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545) -0.163323151588815 -1.31720145584187 0.214834773665565 1 0.200548666804613 6.56223451758002 -0.163323151588815 0.154791440434806
AT4G13480_at 1.45199014603856 1.46713665506757 1.20299913352944 1.53757583522719 1.15799187813873 1.43075317786324 1.26417561328796 1.26340105356096 1.58195978663383 1.06696437935168 0.984266212769932 1.1945982954395 1.35889067562820 1.34004293159296 1.18102994694598 1.26110279550126 1.38786298679823 1.26054651593380 1.73480585545496 0.201978500513177 0.199327668173877 0.206301498660159 0.201967806053285 0.199327668173877 0.199327668173877 0.208909181026742 0.203954482706035 0.205364356442427 0.200676612881032 0.214822859322858 0.214889235165546 0.209568192382921 0.199327668173877 0.219945239870051 0.209957507483221 0.205253361946535 0.215447828374685 0.203460810774270 4 4 + 7837188 7837610 7837408.818 7836671 7837680 + gene protein_coding_gene FALSE TRUE AT4G13480.1 AtMYB79 (myb domain protein 79); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB305 (myb domain protein 305), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G24310.1); similar to Os02g0618400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047449.1); similar to Fgenesh protein 125 [Beta vulgaris] (GB:ABD83304.1); similar to Os04g0508500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053271.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.122273328101519 -1.31697133679446 0.214909296990715 1 0.200286928186405 2.7006458793674 -0.122273328101519 0.0747488606934174
AT4G04880_at 6.52406352347577 6.20945009086632 6.55846621476849 6.08922155752093 6.85883418715863 6.49155325292212 6.63564870536066 5.96102880489957 5.46935675202892 5.4999899352322 5.43386204782049 5.99350415564724 5.83058108546522 6.20195027398541 5.22526021896218 6.16857052948084 5.55301997338883 5.27082963958028 5.64340571895266 0.266536408041842 0.259613811733656 0.264246653145057 0.266783145276202 0.265225331929133 0.268451175177294 0.270213817127001 0.258938874162683 0.260566479252029 0.258477730590926 0.258477730590926 0.265691445020609 0.258477730590926 0.264093032819186 0.258477730590926 0.258477730590926 0.282706903702975 0.266812153301487 0.258477730590926 4 4|0 -|/ 2465122 2466008 2465633.429 2464857 2467164 - gene protein_coding_gene FALSE TRUE AT4G04880.1 adenosine/AMP deaminase family protein similar to Adenosine/AMP deaminase [Medicago truncatula] (GB:ABE77791.1); contains InterPro domain Adenosine/AMP deaminase; (InterPro:IPR001365) 0.169542063539337 1.31687918913792 0.214939144682286 1 0.200182127959788 12.0396739800945 0.169542063539337 0.165009183247311
AT1G31550_at 9.01413685796268 9.0829422787777 7.7472554519875 8.07512340796276 7.65019262058333 7.29205321951038 6.62844242488671 6.58963675607942 6.4886994444475 6.86443086453691 6.83242205032929 7.52409146175538 6.4437199514701 7.41211393584803 6.92789080329262 6.7858451037522 6.24994068097394 6.82517108332289 6.10040343010088 0.202586274224484 0.207018321484893 0.203227549751671 0.206841288603332 0.200928186306709 0.214346562720671 0.198936967023038 0.197789449495859 0.220798159248748 0.21034413956805 0.192054538474577 0.197965284525161 0.192054538474577 0.192054538474577 0.194084181642815 0.196234158225973 0.209980259810645 0.196772598799542 0.206311100252917 1 1 - 11295670 11296362 11295970.818 11295506 11297360 - gene protein_coding_gene FALSE TRUE AT1G31550.1|AT1G31550.2 GDSL-motif lipase, putative|carboxylic ester hydrolase/ lipase similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28600.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.126502366532829 1.31671062788018 0.214993752450675 1 0.199990435292743 14.4398031923212 0.126502366532829 0.0851318656945236
AT1G32430_at 3.18082986366375 2.65424442991836 3.47975132387392 3.51786749851424 2.89414850229747 2.99001384022952 3.17772061648122 3.35666895876022 3.59383777573705 3.70507831861272 3.88864691604984 3.40125149609297 3.59956094486205 3.24318015849608 3.49772313251245 3.54585410923464 4.15412516378287 3.61979725966387 3.14833741300453 0.228667388032418 0.230155869778880 0.225185503996957 0.225185503996957 0.225185503996957 0.225185503996957 0.225185503996957 0.226207787893792 0.239303088716969 0.246376501264041 0.225185503996957 0.228439536755773 0.233695317092779 0.232537866937391 0.226255933643697 0.238358137528091 0.225185503996957 0.225185503996957 0.227885777936237 1 1 - 11705175 11705719 11705400.75 11704912 11706305 - gene protein_coding_gene FALSE TRUE AT1G32430.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47390.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.132214442912489 1.31632928625074 0.215117335516376 1 0.199556826322528 6.70699824590315 0.132214442912489 0.0978880358132904
AT1G67030_at 1.91243803370724 1.20883600882217 1.77178292128285 1.91601066270646 1.36085429145260 1.74536093453216 1.49934697893606 1.31831349291375 1.65600099415893 1.77822254791121 1.98138093714673 1.31099758356267 2.01836939755877 1.75822133767819 1.46176053522951 1.43703117081423 2.42362120416511 1.84708977242973 1.60443386448584 0.190410432514804 0.187081885024938 0.195295511222215 0.194628851041447 0.184224385071894 0.195524870688316 0.184224385071894 0.189149996289091 0.197868065109806 0.191192774247916 0.191814341767139 0.189485842179791 0.191929582419212 0.194025794396256 0.189625845780396 0.185252635777341 0.202167118826788 0.194345046601735 0.190259175081381 1 1 + 25020382 25020875 25020617.727 25020206 25021175 + gene protein_coding_gene FALSE TRUE AT1G67030.1 ZFP6 (ZINC FINGER PROTEIN 6); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 6 (ZFP6) [Arabidopsis Thaliana] (GB:Q39265); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G68360.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB64610.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.157012548684918 1.31606003121956 0.215204629384370 1 0.199250719873956 3.32129864613172 0.157012548684918 0.144423000887733
AT3G22770_at 2.03119933618716 2.21845883773157 2.53927792364566 2.64508905493794 1.84659734914207 1.43221304708994 2.35343623048906 2.15233800863020 2.06330581971695 2.46072362588939 2.04322418037394 2.02597027673553 2.17861058759824 2.23269479213974 2.14644175687215 2.23765603634869 2.18711689849172 2.70700490841894 2.68196450590348 0.179496957148762 0.185649493314891 0.190717677478474 0.200001004634852 0.177177524910197 0.175911721557817 0.182713091056364 0.178092392425859 0.182837875179828 0.180224960339950 0.18027145506452 0.175911721557817 0.184180011207122 0.176815120759926 0.194541660355293 0.179137523191013 0.184758604449067 0.180068991289976 0.182834998669163 3 3 - 8047709 8048242 8048019.818 8047691 8048674 - gene protein_coding_gene FALSE TRUE AT3G22770.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G19470.2); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABD33336.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.127610906884917 -1.31543382498434 0.215407761383846 1 0.198538978486277 4.46324518021119 -0.127610906884917 0.0879718683140241
AT4G32830_at 1.9727299935311 2.31860979770044 2.21504459841468 2.08306395854308 1.87264786597321 2.19361111809661 2.01494846915867 2.61364156612598 2.10336877555013 2.43202140846686 2.72559550734042 2.49992595566133 2.60104681194772 2.4970524160127 3.44417248469221 2.60241724250630 2.67404362136527 2.89868228629469 2.3714271946354 0.223754967901710 0.220153676877243 0.219811852148277 0.224661747914249 0.221660769883135 0.227109216505487 0.224692625605253 0.220545448823519 0.228377063328192 0.219127868612915 0.220394310753977 0.214855554890506 0.214855554890506 0.217745721695378 0.221123819493525 0.21832694074794 0.219371306725652 0.217694702949978 0.220157081432319 4 0|4 /|+ 15843529 15844326 15844049.222 15842457 15844540 + gene protein_coding_gene FALSE TRUE AT4G32830.1 ATAUR1 (ATAURORA1); histone serine kinase(H3-S10 specific) / kinase/ protein serine/threonine kinase Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. It specifically phosphorylates Ser10 of histone H3 and colocalizes with phosphorylated histone H3 during mitosis. Identical to Serine/threonine-protein kinase Aurora-1 (EC 2.7.11.1) (AtAur1) (Aurora-like kinase 1) (AUR1) [Arabidopsis Thaliana] (GB:Q9M077;GB:Q8LBX4); similar to ATAUR2 (ATAURORA2), histone serine kinase(H3-S10 specific) / kinase [Arabidopsis thaliana] (TAIR:AT2G25880.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80792.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.150852004902316 1.31523780766547 0.215471378894141 1 0.198316235570173 4.68310692108216 0.150852004902316 0.133880188398676
AT3G18570_at 1.48058504087103 0.764105541542202 1.32553472693426 1.39886972436841 0.602402197418632 1.02216783160020 0.96145863249919 1.09734770300191 1.30076180765070 1.60742825971164 1.00072009286196 0.896514985062544 1.1065596635743 0.480481591346102 0.963624103400328 0.807619290738348 1.13824177489631 1.15260865533184 0.903173256967302 0.198756407933061 0.195757283261786 0.202043903309690 0.195757283261786 0.195757283261786 0.204395653372755 0.199907543123981 0.196842072805499 0.199991914831427 0.195757283261786 0.198555702292284 0.195757283261786 0.203433932035796 0.199121735840817 0.199209582251231 0.196902588750314 0.201378333180194 0.210824768059648 0.201724029443829 3 3 - 6396098 6396553 6396302.909 6395866 6396612 - gene protein_coding_gene FALSE TRUE AT3G18570.1 glycine-rich protein / oleosin similar to glycine-rich protein / oleosin [Arabidopsis thaliana] (TAIR:AT1G48990.1); similar to OLE-5 [Coffea canephora] (GB:AAX49393.1); contains InterPro domain Oleosin; (InterPro:IPR000136) -0.157894390594976 -1.31487870301283 0.215587966563762 1 0.197908230027084 2.18843428032682 -0.157894390594976 0.146166144961043
AT1G31190_at 9.03945738931213 9.045725499039 9.1577353798659 8.93271414679244 8.8780157846385 8.27103218081887 9.85348186495521 9.61365984966464 8.72573669032101 9.2656928998559 9.42990117988271 9.25837266627422 9.20322963884217 9.1929956346753 9.21966586723982 9.54462635505922 9.145497623522 9.10099031665792 8.9170375043987 0.126509528665411 0.127551391369221 0.126326442863811 0.123562154918257 0.123981332390766 0.141953802565427 0.124198733455816 0.128554211959923 0.139775705485300 0.123213449910627 0.127885876343583 0.123828859445212 0.131044687015569 0.126662530975619 0.121611297576174 0.126246394557557 0.134411902185564 0.130189702905434 0.130028279324279 1 1|0 +|/ 11145759 11146695 11146101.667 11144753 11146911 + gene protein_coding_gene FALSE TRUE AT1G31190.1 inositol monophosphatase family protein similar to VTC4, 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT3G02870.1); similar to inositol monophosphatase [Chlamydomonas incerta] (GB:AAW82030.1); similar to Os02g0169900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046024.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) -0.142892949484924 -1.31469907691106 0.215646303815410 1 0.197704172822717 18.2146772327830 -0.142892949484924 0.119472600773446
AT2G06990_at 5.70747665967305 5.45343827403425 5.34035037598308 5.2104749625345 5.45949481268184 5.0432558705797 5.09119441388439 4.89640756272517 4.66003768894584 4.52373139860983 4.32277384209049 4.46608478457212 4.23255009911603 4.77595058808262 4.52088480153411 4.66755440902432 4.75099942103267 4.26825344706736 5.02726417476252 0.178966865377538 0.175379134277694 0.174798866391158 0.17423391319227 0.176194984824226 0.177144565332399 0.17491637268939 0.179957208101840 0.187912325518595 0.183060920970913 0.176045822997426 0.174629518661243 0.174822038019561 0.182013876026409 0.176384391974102 0.174611621076263 0.173080404383725 0.186461657511043 0.178311012163245 2 2|0 +|/ 2899668 2900850 2900021.2 2894937 2901075 + gene protein_coding_gene FALSE TRUE AT2G06990.1 HEN2 (HUA ENHANCER 2); ATP-dependent helicase encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl. similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G59760.1); similar to unnamed protein product [Mus musculus] (GB:BAC40348.1); similar to superkiller viralicidic activity 2-like 2 [Gallus gallus] (GB:NP_001012962.1); similar to Ribosomal protein L29; AAA ATPase; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE79203.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.130057442754434 -1.31462641859279 0.215669904778436 1 0.197621637751144 9.89408287226418 -0.130057442754434 0.093609600912725
AT2G26290_at 1.91398989412573 2.16796578353018 1.61429918938768 2.49596250211786 1.13185268376653 1.62298370643552 1.34204591461449 1.89492899272153 2.01106573717613 2.24356129678139 1.79174181636333 2.04866486224340 2.07078049891269 1.57308695858712 1.58029088470511 1.4913060348491 1.7748857352134 1.52068639444331 1.76523510785388 0.179400902949230 0.187698832115857 0.180290498463300 0.187103286686789 0.18347053192605 0.181980999068558 0.188863637956970 0.180360470390751 0.180159963382178 0.180550590167591 0.180056964940954 0.183664016110318 0.187818568597940 0.178301343985128 0.187802592992795 0.178301343985128 0.182980665582049 0.195584487030926 0.181492503782026 2 0|2 /|- 11199355 11199958 11199697.7 11199215 11201337 - gene protein_coding_gene FALSE TRUE AT2G26290.1 ARSK1 (ROOT-SPECIFIC KINASE 1); kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G05940.1); similar to serine/threonine protein kinase (GB:AAA81538.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.194324220796766 -1.31448096707379 0.215717156899829 1 0.197456424027605 3.64202913938835 -0.194324220796766 0.203934721239170
AT3G55260_at 8.54691555574568 8.63273535387177 8.2654637974966 8.30149958921365 8.35855968444154 8.11590050950344 7.42737269706277 7.3691348828184 7.76491656449991 7.40279343504326 7.3499698846095 7.82161424113293 7.08241943289284 7.66810010690328 7.27056726970155 7.62828996444814 7.3283405053905 7.50165408117384 7.3243522947312 0.201511734196176 0.206398015656574 0.203158778730101 0.200712966716101 0.205339414014957 0.210579889145674 0.199629039898248 0.199629039898248 0.210157207903117 0.203358391789247 0.203934403836830 0.200303902882216 0.208186486366895 0.211050708369445 0.202469863005361 0.204490157592082 0.21116331208344 0.214553646640749 0.201639925245363 3 3|0 +|/ 20502894 20503747 20503412.8 20500225 20504053 + gene protein_coding_gene FALSE TRUE AT3G55260.1 glycosyl hydrolase family 20 protein similar to glycosyl hydrolase family 20 protein [Arabidopsis thaliana] (TAIR:AT1G65590.1); similar to Os05g0115900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054468.1); similar to Os01g0891000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045052.1); similar to putative beta-N-acetylhexosaminidase [Oryza sativa (japonica cultivar-group)] (GB:AAT77374.1); contains InterPro domain Glycoside hydrolase, family 20; (InterPro:IPR001540) 0.112665805239636 1.31442280871595 0.215736052902787 1 0.19739036740848 15.6040595257057 0.112665805239636 0.0460919439924104
AT4G20840_at 4.81514875971596 5.46519657333419 4.5195873812165 5.11626922210393 5.63877564672217 5.2185314983776 6.33468843708756 6.52353329280185 5.66224756690974 6.11109844828882 6.77654576825300 6.84846983716534 6.59359444062586 6.34945925898032 6.42720542972091 6.44061795028811 5.21237427942537 5.90617004356322 6.24265277504936 0.198345801013576 0.202691596508868 0.210986502791854 0.197434566438629 0.195341960801231 0.205820041041146 0.202338362611517 0.200275490014986 0.219966097129272 0.201245221113279 0.199007397345286 0.197743574873661 0.209395050654147 0.204795670098159 0.195341960801231 0.195341960801231 0.205848638310163 0.205377573051106 0.195341960801231 4 4 + 11158986 11159514 11159235.182 11157927 11159546 + gene protein_coding_gene FALSE TRUE AT4G20840.1 FAD-binding domain-containing protein similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30740.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90038.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90036.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) -0.173689566354858 -1.31392424345007 0.215898095635066 1 0.196824178264638 11.6162851294627 -0.173689566354858 0.172261893217674
AT3G11830_at 7.34899427185537 8.44643143709176 7.11620057385492 7.53368557309036 8.10332990043491 8.25460534323142 7.7222617882027 8.1761518013035 7.66379192029652 7.45605941626335 7.28428384853856 7.4560509674651 7.28490121875436 7.47781313573621 7.39199845854111 7.0845292960371 7.23121687162203 7.20446835560768 7.49933883868976 0.203801632184107 0.204119091961393 0.207141103470214 0.202487919774717 0.203877670800517 0.206316463173511 0.205023868194312 0.206513689023564 0.217878420815722 0.199500400581816 0.202384600003108 0.205512716433357 0.201665487332583 0.208527374714301 0.199500400581816 0.210056985902621 0.221689030891611 0.208924893387113 0.207167920761731 3 3|0 +|/ 3734861 3736132 3735656.889 3732667 3736380 + gene protein_coding_gene FALSE TRUE AT3G11830.1 chaperonin, putative similar to ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G20050.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus tauri] (GB:CAL57442.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG05730.1); similar to putative t-complex protein 1 theta chain [Oryza sativa (japonica cultivar-group)] (GB:BAD45605.1); contains InterPro domain T-complex protein 1, eta subunit; (InterPro:IPR012720); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844) -0.204663383169603 -1.31389123954024 0.215908826033849 1 0.196786703136398 15.2585264998603 -0.204663383169603 0.21941546568779
AT1G54280_at 0.781022610997945 0.737217643113902 1.27230658162508 1.27590508640398 0.864421876155624 0.687456112106738 1.10879485584383 1.08490280483821 0.411029700810391 1.21136852967101 0.909316593780629 1.01780472156235 0.98967913157366 1.26637310736224 1.28852277600314 1.11206680968340 1.32331051783003 0.842258766436056 1.29309664123948 0.219940395395871 0.224897096955995 0.220358016013253 0.223145723199537 0.217535923390054 0.220931054761388 0.224774019106436 0.228410089354344 0.217796257316760 0.227634054960345 0.226322176534888 0.217535923390054 0.237018518876658 0.226791659977456 0.219272380496769 0.217535923390054 0.228648656129493 0.221246439191975 0.239057169022517 1 1 - 20266541 20267004 20266807.273 20266433 20270960 - gene protein_coding_gene FALSE TRUE AT1G54280.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 6 (EC 3.6.3.1) (Aminophospholipid flippase 6) (ALA6) [Arabidopsis Thaliana] (GB:Q9SLK6); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G17500.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G13900.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G72700.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE81304.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to Putative phospholipid-transporting ATPase 7 (Aminophospholipid flippase 7) (GB:Q9LVK9); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.109436432248182 1.31380733183778 0.215936108506842 1 0.196691430984769 2.00925253485361 0.109436432248182 0.0318249061532316
AT2G27350_at 7.48396011669585 7.62670583937327 8.18853680736744 7.96923233133673 7.82451001310526 7.21993904871423 7.47651625084426 7.461572600548 6.97028470178552 7.42400432164827 7.06399758938547 7.37410740167999 7.32020554671126 7.42070965297352 7.23709472974822 7.74384858364435 6.84227595628279 7.36977063058712 7.52098464546924 0.160249959861505 0.163989638556365 0.159916400059686 0.162069396806232 0.164385809653625 0.170420038761481 0.16502405388389 0.160460770714863 0.173295316835211 0.165984949945153 0.155316343079507 0.153835314290745 0.154090650426786 0.153889690910995 0.155481786493844 0.155111748862073 0.178227630266892 0.168215464274040 0.162974097038296 2 2|0 -|/ 11706882 11707708 11707363.111 11706627 11711326 - gene protein_coding_gene FALSE TRUE AT2G27350.1|AT2G27350.2|AT2G27350.3|AT2G27350.4|AT2G27350.5 OTU-like cysteine protease family protein similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.2); similar to PREDICTED: similar to CG6091-PA, isoform A isoform 5 [Canis familiaris] (GB:XP_863475.1); similar to Os04g0414100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052752.1); similar to OSIGBa0137L20.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66475.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.2); similar to PREDICTED: similar to CG6091-PA, isoform A isoform 5 [Canis familiaris] (GB:XP_863475.1); similar to Os04g0414100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052752.1); similar to OSIGBa0137L20.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66475.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.139887943337244 1.31326980252292 0.216110952666960 1 0.196081200313956 14.9571678681703 0.139887943337244 0.114032408353882
AT3G04150_at 1.35142242278477 1.34224897373961 1.11047881398606 1.05394117234293 1.26209509307269 1.07362306885587 1.50689682700454 1.24002735182521 1.92932914575589 1.28317691088567 1.48206279040875 1.74750659384730 2.15823451906517 1.28571028910521 1.30139530603393 1.54117765528903 1.3986821507312 1.77178275516371 1.53431035982706 0.207814347837108 0.204549117228119 0.233529591994261 0.22779756285347 0.210802673181092 0.215655214448746 0.208772905069532 0.210948167615620 0.208618409345591 0.218096757835467 0.209310585850341 0.221037512802523 0.21408579708292 0.230190266334766 0.208123673787468 0.213675139558995 0.213357551824745 0.218998469436042 0.216222546087506 3 3 - 1089475 1089937 1089719.818 1089458 1090475 - gene protein_coding_gene FALSE TRUE AT3G04150.1 germin-like protein, putative Identical to Putative germin-like protein subfamily 1 member 2 precursor [Arabidopsis Thaliana] (GB:Q9M8X1); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT3G04190.1); similar to germin-like protein 3 [Vitis vinifera] (GB:AAQ63185.2); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -0.11578374407074 -1.31290143790206 0.21623083919362 1 0.195663115497011 2.82663728859067 -0.11578374407074 0.057401394040796
AT4G34620_at 12.8489292348340 12.9833770331239 12.5124591539596 12.7393154712693 12.7983622910816 12.7325865767747 12.9785557135239 13.3518818190664 13.7033686441021 13.4782715846679 13.8175498461385 13.8429231162522 13.5795811754072 13.7022176658947 13.7474293371716 13.5597746067253 13.2603206408474 13.6109517920877 13.4472142352001 0.0690835782266905 0.0655596831595921 0.0675538558977582 0.0661696753436189 0.066269948374118 0.0692424695592442 0.0654145286375609 0.068349333221481 0.0737472251419442 0.0667947412636306 0.0663782009154415 0.065042716353364 0.0666559750860271 0.0704259097984026 0.0702288636047176 0.0675542692529194 0.0707425471283271 0.068538775669963 0.0674183983893318 4 4 - 16535104 16536072 16535536.455 16534860 16536176 - gene protein_coding_gene FALSE TRUE AT4G34620.1 SSR16 (ribosomal protein S16); structural constituent of ribosome Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype similar to ribosomal protein S16 family protein [Arabidopsis thaliana] (TAIR:AT5G56940.1); similar to Ribosomal protein S16 [Medicago truncatula] (GB:ABE93061.1); similar to Os09g0498100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063564.1); similar to Os08g0517900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062247.1); contains InterPro domain Ribosomal protein S16; (InterPro:IPR000307) -0.12393152114511 -1.31266397216784 0.216308152851213 1 0.195393641468204 26.459705916982 -0.12393152114511 0.0799128184737623
AT4G24940_at 8.71580306076382 8.79664590347795 8.81228069295408 8.8207523738207 8.97500509527798 8.72794298090103 8.8069745922718 8.84306756970756 7.69199056628304 8.1042378819531 8.30363296861553 8.45036612476675 8.05409672054188 8.19440597306108 8.27141087877305 8.0724521957293 8.16382059303558 8.26980602742709 8.32731977135213 0.152528843015234 0.157508432504975 0.156505549668711 0.168220704087012 0.154863903708098 0.163104472054706 0.156186632257222 0.160216817637578 0.191167469358034 0.152844802760103 0.159200428499857 0.153803943811565 0.167997259191641 0.164746263154081 0.173328131538563 0.155765266789882 0.170832045291344 0.157597639898959 0.15468076919456 4 4|0 +|/ 12824751 12825952 12825422.2 12823506 12826210 + gene protein_coding_gene FALSE TRUE AT4G24940.1 SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. similar to SAE1B (SUMO-ACTIVATING ENZYME 1B), SUMO activating enzyme [Arabidopsis thaliana] (TAIR:AT5G50580.2); similar to SUMO activating enzyme 1b (SAE1b) [Arabidopsis thaliana] (TAIR:AT5G50680.1); similar to ubiquitin activating enzyme [Solanum lycopersicum] (GB:CAA09619.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) 0.112344349782096 1.31263007213478 0.216319191814902 1 0.195355174807199 16.9441498712001 0.112344349782096 0.0454411778863692
AT3G24790_at 0.781056414816307 0.833816923143125 1.03574844367863 0.721847425364656 0.571205153488584 1.36731208709469 0.89663532953895 1.33204164865345 1.31434151847199 1.02632532217895 1.12055334571945 0.553653142080578 1.27135609313278 1.11781382856122 1.16099764281716 1.10387005151692 0.767279230290144 0.978332879034916 1.59556863509312 0.174907132278653 0.185022256290636 0.178280674169269 0.188436061799846 0.173143480855175 0.182542843498546 0.180272507131135 0.177052411735473 0.185672688616186 0.171576363669218 0.188095392011801 0.177930124419055 0.178517526991692 0.178188067080454 0.185028139048004 0.176317721570694 0.176745192887005 0.182570532974133 0.175060270308941 3 3|0 +|/ 9053855 9054417 9054180.5 9052989 9054538 + gene protein_coding_gene FALSE TRUE AT3G24790.1 kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G07070.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT58829.1); similar to Os07g0668900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060583.1); similar to Os01g0936100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045326.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.169852883450928 -1.31255313054007 0.216344248242257 1 0.195267871108337 2.10311318750172 -0.169852883450928 0.166410073152304
AT4G01400_at 7.48255772132341 7.9915265517715 6.56744259005865 7.14281344155696 7.7361493237197 7.3300489257936 7.2218426862809 7.46782592194688 7.50451917171688 7.72403450701983 8.13431315461764 8.27014872280982 7.3508123990963 7.7388116110741 7.96060456676056 7.86218580075962 6.95005883442836 7.42310350300804 7.8465559064299 0.206884738302327 0.205234444466614 0.212868583178579 0.20456846454764 0.198881156635319 0.226814111593325 0.201305419131625 0.201746138983512 0.228532162022394 0.202542366784989 0.202837600382512 0.202924388827184 0.206584194504643 0.208237638710533 0.204182475886887 0.200090367714211 0.21779269900074 0.216150006200404 0.202523735060250 4 4 - 573165 573669 573463.636 573098 577276 - gene protein_coding_gene FALSE TRUE AT4G01400.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46100.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32707.1); contains InterPro domain COG4 transport; (InterPro:IPR013167); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.163636510517338 -1.31248486568463 0.216366481041792 1 0.195190415704088 15.0690049048689 -0.163636510517338 0.156279588734083
AT1G50140_at 7.0075292937065 6.4844882000294 6.2868736625906 5.91994670973965 6.60166658704733 6.50267032464554 6.33734211935498 5.97872619302799 5.85744795970237 6.38212222426108 6.41121940310375 6.3622368964759 5.84890119873635 6.33686497817744 5.82477840706528 5.83293114675642 6.08654129816226 5.4973936282658 6.34637270211531 0.212494638732295 0.205079259277332 0.21141493621303 0.213007376458823 0.207944669990089 0.209451147751594 0.209218699752168 0.216194008016163 0.228264396970331 0.215631880810124 0.203800173410222 0.208794850236410 0.210156117397432 0.209105156327503 0.212464853755722 0.206961214974598 0.220932867020391 0.211287999906282 0.211010575136082 1 1|0 -|/ 18573591 18574532 18574097.75 18573449 18579492 - gene protein_coding_gene FALSE TRUE AT1G50140.1 AAA-type ATPase family protein similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G19740.1); similar to transitional endoplasmic reticulum ATPase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16461.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.147219028145311 -1.31237398244123 0.216402597988492 1 0.195064610210806 12.5001167187440 -0.147219028145311 0.127944992405646
AT3G29310_at 5.34158794774391 5.13679987587889 5.02588895390264 5.34816288888296 5.05808882048523 5.61231057893338 5.0657395095282 4.85388153650369 4.96027324644753 5.04861349749693 5.39436679616748 4.92360761009795 4.87396373373942 4.89840577284309 5.0289997902057 4.85941177494399 4.98118408018307 5.09461007251512 4.63228540964325 0.199376367559225 0.209290494099282 0.210321760303230 0.199421384292032 0.197371503600962 0.214048064901428 0.204655385366550 0.207194137802025 0.221815713917322 0.197371503600962 0.20094818542286 0.201037162712430 0.209919061543351 0.200399386678387 0.209292132654012 0.203307507262469 0.206092471669621 0.208673152595467 0.215934732250601 3 3 + 11252128 11252656 11252389.636 11250889 11253057 + gene protein_coding_gene FALSE TRUE AT3G29310.1 calmodulin-binding protein-related similar to Os05g0512400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056021.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.144019289555894 1.31214731314713 0.216476444244370 1 0.194807459899983 10.1239122248321 0.144019289555894 0.122104040346780
AT2G22530_at 3.34718010682781 3.90670906660608 3.08162167800303 3.47317294358378 3.68758822013369 3.44364030479256 4.15131707089556 3.57596469920864 4.00223521893694 3.65968570494001 3.33318839241878 3.89712033025781 3.62504627620849 4.03451658311694 3.35219368241150 3.71535371211739 3.60870669000236 4.03322873596228 3.46219372516963 0.22056110640576 0.218911364021585 0.219363826448547 0.227411254019644 0.210851773257271 0.219990339202392 0.207401378471804 0.209563185076390 0.222854259510577 0.203379126173684 0.204312281763163 0.203670236243067 0.208607666696371 0.209022041810050 0.216332875190365 0.202776192013193 0.214200343887511 0.207067788198664 0.210602873373138 2 2|0 -|/ 9580322 9581086 9580773.6 9579876 9584521 - gene protein_coding_gene FALSE TRUE AT2G22530.1 transferase similar to phosphatidylinositolglycan class O (PIG-O) family protein [Arabidopsis thaliana] (TAIR:AT5G17250.1); similar to phosphatidylinositolglycan-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19443.1); contains domain PHOSPHATIDYLINOSITOL GLYCAN (PTHR23072:SF1); contains domain Alkaline phosphatase-like (SSF53649); contains domain no description (G3D.3.40.1150.10); contains domain FAMILY NOT NAMED (PTHR23072) -0.165952932646590 -1.31196908560211 0.216534523277020 1 0.194605287434392 7.2873780195868 -0.165952932646590 0.160197216144851
AT3G03000_at 4.70813676767637 5.15447961655792 4.68615110393839 4.73092045100967 5.46807645387983 5.2177714732129 3.53345806747079 4.05265482796474 5.49829282062604 4.36799688734711 5.22013135222115 4.82172225057909 4.57312558780414 4.7881087281418 4.33213370448806 3.99100001398556 3.25190925553958 4.26643220445411 4.46339269901740 0.210991107095902 0.206851890283323 0.209151980181638 0.208841763092067 0.218941089461717 0.212923828282306 0.224809096218239 0.209762310210913 0.218945780752943 0.209426315185041 0.208567669206636 0.214139261531529 0.206959759380974 0.217178169144025 0.211385683848683 0.211039224230128 0.218775226770615 0.206851890283323 0.212740809185193 3 3 + 677417 677854 677597.182 677247 678091 + gene protein_coding_gene FALSE TRUE AT3G03000.1 calmodulin, putative Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner Identical to Calmodulin-like protein 18 (Calmodulin-15) (AtCaM-15) (CAM15) [Arabidopsis Thaliana] (GB:Q9M8U1); similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G32250.1); similar to calmodulin [Theileria parva strain Muguga] (GB:XP_765284.1); similar to calmodulin [Bigelowiella natans] (GB:AAT09075.1); similar to Os01g0505600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043146.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.146278567707121 1.31156748706251 0.216665439179576 1 0.194149804906349 9.28502168995476 0.146278567707121 0.126394379751149
AT3G13930_at 9.42503460376425 9.50578478709639 9.4454803806725 9.47699597872112 9.60195863698854 9.28104257243872 9.90307131160241 9.72346933899908 9.10414570578784 9.4742581511333 9.63505192046722 10.0386109794086 9.69078451941828 9.67848734345187 9.7536178272914 9.80094153238364 9.56059052228766 9.64115933961722 9.32279720011724 0.105422903545528 0.101881400930332 0.106185312623421 0.106064929428555 0.103164461620969 0.109564996295994 0.105455580132497 0.106325783307887 0.117121736416545 0.106919644488262 0.104051529501626 0.101881400930332 0.105458493618681 0.106176050576238 0.104702709066899 0.101881400930332 0.115013943134681 0.109089508434233 0.105824707221885 3 0|3 /|+ 4599232 4600124 4599794.8 4595883 4600476 + gene protein_coding_gene FALSE TRUE AT3G13930.1 dihydrolipoamide S-acetyltransferase, putative Identical to Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 2) (PDCE2) (E2) (Dihydrolipoamide S- acetyltransferase component 2 of pyruvate dehydrogenase complex) (PDC- E2) [Arabidopsis Thaliana] (GB:Q8RWN9;GB:Q9ASS8;GB:Q9LVK7); similar to dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G54220.2); similar to dihydrolipoamide S-acetyltransferase [Zea mays] (GB:AAD46491.1); similar to Os06g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056555.1); similar to Dihydrolipoamide succinyltransferase [Medicago truncatula] (GB:ABE80470.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide acetyltransferase, long form; (InterPro:IPR006257); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.118267263767146 1.31103057711131 0.216840566435845 1 0.193541009168367 19.0580076264788 0.118267263767146 0.0653857715371944
AT1G70590_at 7.49925255392844 7.26638861066434 8.0150241316505 7.7292430745006 7.6309107294319 7.40265219686124 6.92954006264044 6.71319775446541 6.75728900818872 6.48572136493192 6.28315139188 6.21466405307049 6.5315100031228 6.78675242016814 6.1216396789028 6.74578158905167 6.27162176519425 6.15898358187738 6.94947373634734 0.228299864272422 0.231395163011458 0.229750073638661 0.238361361450522 0.231157841150731 0.235772267614193 0.228395807929539 0.226850684345729 0.243442051371161 0.231435529011056 0.227849144747246 0.225637580931365 0.230015541204566 0.223833200182424 0.223475965581722 0.226671349023129 0.235783037507175 0.232674569445894 0.224795598668891 1 1|0 +|/ 26622872 26623770 26623377.9 26621984 26624051 + gene protein_coding_gene FALSE TRUE AT1G70590.1 F-box family protein similar to suppressor of lin-12-like protein-related / sel-1 protein-related [Arabidopsis thaliana] (TAIR:AT1G18260.1); similar to Sel1-like repeat [Geobacter uraniumreducens Rf4] (GB:ZP_01140406.1); similar to OSIGBa0106G07.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67315.1); similar to Os04g0476000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053077.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.125398905802758 1.31086499575714 0.216894598593057 1 0.193353293892999 13.9583216877167 0.125398905802758 0.0838560798643713
AT3G13330_at 9.67756594506711 9.77697488972156 10.0093498395353 10.1044371653271 9.7938552112117 9.50101006338463 9.1587021078404 9.26432668176997 9.30718350555519 8.94187523891007 8.7776028761764 9.0121459533098 8.79411849729706 8.97762575628264 8.45795207626988 8.84150054619284 8.90165326002566 8.97414267566369 8.72915671917028 0.132313562524293 0.129259160378611 0.128774607068976 0.123672484736041 0.126451234849156 0.129312747659366 0.132342101172004 0.129877868216676 0.133120916137541 0.128264517338638 0.132202242284029 0.128677068613450 0.131195805198890 0.144662856680514 0.14077937175339 0.130197975232965 0.127405299790703 0.126586418226059 0.126355249746568 3 3|0 -|/ 4320143 4321044 4320638.111 4319654 4330068 - gene protein_coding_gene FALSE TRUE AT3G13330.1 binding similar to proteasome activator subunit 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53980.1); similar to Os06g0301300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057456.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.116062440519319 1.31067663149911 0.216956078667183 1 0.193139770544776 18.5781933344976 0.116062440519319 0.0588992683487056
AT3G26920_at 2.21883007354770 1.81745815980572 2.04591995584062 2.12991886242308 1.77968029539173 2.03912092877532 1.66861091629712 1.62054581178783 2.18698587647427 1.86632656073485 1.77693670880661 1.98376089601485 2.27467550502790 2.10462987420131 2.29552420446703 2.06524670514176 1.79375607561386 2.40221535381114 1.95627321344546 0.175163607250327 0.172473998940832 0.174066803271250 0.184455804095769 0.174058599102609 0.180627709783262 0.172696523073696 0.174618498354523 0.179261672355744 0.187049992287381 0.177115165698473 0.169797300045161 0.169797300045161 0.170965817458875 0.169797300045161 0.174324647246389 0.175422174777787 0.171175685278514 0.169797300045161 3 3 + 9924530 9925103 9924747 9922416 9925128 + gene protein_coding_gene FALSE TRUE AT3G26920.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.125598359374396 1.31060865327823 0.216978269544813 1 0.193062718043860 3.96015481661885 0.125598359374396 0.0843852100096338
AT3G18780_at 11.4569539140845 11.6185033507637 11.0935128768224 11.4272906063482 11.5659756523018 11.4741533437494 11.2899572016000 11.6984896173212 12.3424687650999 11.7289059827070 12.2111944398651 11.8134931610235 11.9998639093210 12.0252063803795 11.7335230545168 11.8292667929282 11.6015318301423 11.7516077717196 11.9501915178334 0.0685614426012616 0.0673882509310339 0.0785143558655595 0.0662888474423275 0.069524364478468 0.0770430170999585 0.0684020942386206 0.067843803843171 0.0735460008788585 0.0708259150396913 0.068377160742826 0.067681529317787 0.0663289817478526 0.0685005356073008 0.0681575631909145 0.0662888474423275 0.076211188426298 0.0676868664817204 0.068516566130014 3 3 + 6476153 6476800 6476510.909 6474848 6477210 + gene protein_coding_gene FALSE TRUE AT3G18780.1|AT3G18780.2 ACT2 (ACTIN 2); structural constituent of cytoskeleton Encodes an actin that is constitutively expressed in vegetative structures but not pollen. Identical to Actin-2 (ACT2) [Arabidopsis Thaliana] (GB:Q96292;GB:Q42056); Identical to Actin-8 (ACT8) [Arabidopsis Thaliana] (GB:Q96293;GB:Q41933;GB:Q9M9C2); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT8 (ACTIN 8), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT1G49240.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin 8 (GB:AAC49523.1); similar to actin [Brassica oleracea] (GB:AAD02328.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.131110369431646 -1.31043923785504 0.217033581796872 1 0.192870699942602 23.3920544067241 -0.131110369431646 0.0967924707467188
AT1G33790_at 3.27651458395439 3.89268039045644 3.23366202631755 3.25185393292249 2.90175833269101 3.53269643726507 3.17551994995563 3.46636445587261 3.11808501890651 3.28807247440654 2.94582409627727 2.61742460690620 3.22395410305292 3.1018623315963 3.15890771921044 2.62699979030297 3.29273511449862 3.22853695892972 2.99552662798095 0.219155905500714 0.215683321160984 0.211600678198901 0.212434940438590 0.210570254953710 0.211194092301994 0.210877990808178 0.222330455264531 0.220883748670215 0.210570254953710 0.214887064262383 0.210570254953710 0.219946607937817 0.213194406264889 0.21873644062771 0.21427752899208 0.220021177239500 0.223499852298797 0.211785404382206 1 1 + 12259698 12260385 12260074.2 12256644 12260555 + gene protein_coding_gene FALSE TRUE AT1G33790.1 jacalin lectin family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28520.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.166070639880964 -1.31031524087869 0.217074072771569 1 0.192730170910484 6.4205939122768 -0.166070639880964 0.160732726905611
AT2G17630_at 2.68323085966060 3.10775627673273 2.84974937859042 2.97925430304480 2.79219499752507 2.8821781210629 3.40461257497017 3.00881716139351 3.76736970075629 3.43791770374943 3.90845713502818 4.43225113877107 2.88989847697363 3.38166316221563 4.24418736368886 3.22553203324721 3.40904471834122 3.24508869749215 3.85240143137086 0.222636591716735 0.215913859486221 0.21993584241784 0.22690978393989 0.219566894761368 0.220445996769829 0.221861293394183 0.219459986479239 0.218450275234643 0.227010162081839 0.216464697983346 0.214779806536368 0.227681886496978 0.222776427863663 0.224830407300531 0.216978054668900 0.214779806536368 0.224727095622401 0.220169046584852 2 2 + 7674392 7674917 7674612 7673667 7675140 + gene protein_coding_gene FALSE TRUE AT2G17630.1 phosphoserine aminotransferase, putative similar to PSAT (phosphoserine aminotransferase), phosphoserine transaminase [Arabidopsis thaliana] (TAIR:AT4G35630.1); similar to phosphoserine aminotransferase [Medicago truncatula] (GB:ABE77665.1); contains InterPro domain Phosphoserine aminotransferase; (InterPro:IPR003248); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) -0.134570478019619 -1.31024568002676 0.217096790451047 1 0.192651339872653 6.60243001879516 -0.134570478019619 0.104084047593631
AT1G53510_at 8.04744613808711 8.3660630189888 8.4459233387922 8.1667539903767 9.12691498732773 8.25496304682988 9.0146043769434 8.52961615361742 9.50046987420211 9.54650642072777 9.20719301960329 9.06151691155566 9.12409019065208 9.33118817827998 8.19384564226233 9.31359138278493 8.89699622829383 9.0682832119964 9.15217622004242 0.160778248589673 0.144652723856907 0.145727210336080 0.149363235874094 0.146048147565335 0.153880188806664 0.150885577233029 0.139736131993155 0.154652503483503 0.137392743493780 0.147666258896253 0.141714060322476 0.146556938398037 0.140124484161568 0.149783475768686 0.134846050778669 0.159498545462191 0.141113006954674 0.134846050778669 1 1|0 -|/ 19974698 19975276 19975000.7 19974332 19978061 - gene protein_coding_gene FALSE TRUE AT1G53510.1 ATMPK18 (Arabidopsis thaliana MAP kinase 8); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 18 (EC 2.7.11.24) (MAP kinase 18) (AtMPK18) (MPK18) [Arabidopsis Thaliana] (GB:Q9C5C0;GB:Q9LPG7); similar to ATMPK19 (Arabidopsis thaliana MAP kinase 19), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G14720.1); similar to ATMPK20 (Arabidopsis thaliana MAP kinase 20), MAP kinase [Arabidopsis thaliana] (TAIR:AT2G42880.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to double HA-tagged mitogen activated protein kinase 19 [synthetic construct] (GB:ABG54346.1); similar to mitogen-activated protein kinase homologue [Medicago sativa] (GB:AAD28617.1); similar to double HA-tagged mitogen activated protein kinase 18 [synthetic construct] (GB:ABG54345.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.182961495194883 -1.31016609680988 0.217122783701134 1 0.192561154434525 17.7061884317051 -0.182961495194883 0.187584071844305
AT4G34850_at 1.87569603885430 1.71256145981813 1.52886541764585 1.54553423770668 1.7956320945911 1.74984855209118 1.95090250905332 1.63442648859426 2.06899034663383 2.33224430429826 1.92802904357132 2.03590300684275 2.25443591611482 1.86765282429482 2.18611500767321 1.75994712202161 1.90064349656753 2.47321317349752 2.03808326790661 0.208046205856035 0.213060428480498 0.206131721735949 0.209462240377157 0.212892783552278 0.212129174185351 0.218238246681247 0.215329015404020 0.217075120156038 0.206358124596812 0.208719622640518 0.209215405266135 0.206131721735949 0.206131721735949 0.211442036401567 0.20821596840465 0.227771206072688 0.209717073707845 0.20724545393984 4 4 + 16609041 16609701 16609397 16608318 16609834 + gene protein_coding_gene FALSE TRUE AT4G34850.1 chalcone and stilbene synthase family protein similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT1G02050.1); similar to Chalcone synthase [Silene latifolia] (GB:BAE80096.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain Type III polyketide synthase; (InterPro:IPR011141); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.117061703013960 -1.30978408097715 0.217247592243106 1 0.19212829951501 3.82277422734561 -0.117061703013960 0.0621899677982535
AT1G31060_at 0.276944924952441 0.694346903890045 0.466901601574383 0.599642703900332 0.351186729753589 0.758945653782676 0.314836051198955 0.616826094907749 0.894210755368817 0.80638149602618 0.335639768552253 0.321861507494571 0.68509221920725 0.709571946471517 0.641889997673335 0.381979194595784 0.983590508551927 0.776610285552378 1.16140379114995 0.205753505073403 0.214524481462685 0.212305688847113 0.209229695004263 0.206987678175998 0.21253044504695 0.206144984566125 0.206797217109215 0.212451248803293 0.205753505073403 0.207162806722500 0.205753505073403 0.209810739437085 0.210246108037426 0.205753505073403 0.209059311874687 0.213206732597763 0.207386298640641 0.211449663228243 1 1 - 11078801 11079085 11078927.182 11078793 11079221 - gene protein_coding_gene FALSE TRUE AT1G31060.1 unknown protein -0.140519286910246 -1.30963165864846 0.217297406643898 1 0.191955617493528 1.28921788767537 -0.140519286910246 0.115999554341613
AT3G10880_at 1.46778828839371 1.41516111660814 1.67495831984329 2.00346921928759 1.51789861572026 1.75167061663309 1.44261636710091 1.49794669291050 1.60328433785936 2.07104622572229 1.72943271325914 1.73728490236852 1.68486615227603 1.59003999093074 1.76122880045121 1.41284347636944 1.72571011491038 1.75700265244602 1.4724336922755 0.162829427561749 0.166242622698482 0.162463583969676 0.162156709897840 0.170804926018364 0.160549357585441 0.159737527527324 0.165720333869384 0.165837047745291 0.163386220738349 0.167504144923946 0.163414182734608 0.164805003325711 0.161137521466053 0.157981052238464 0.167987056468536 0.157530436904772 0.170431701555547 0.163485235485119 3 3 + 3406538 3406935 3406733.909 3405822 3407439 + gene protein_coding_gene FALSE TRUE AT3G10880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05180.1); similar to Os05g0168800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054757.1); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE94140.1); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) 0.12016704585423 1.30956958669522 0.217317695579596 1 0.191885299111819 3.29163324739326 0.12016704585423 0.0710156594330982
AT2G45690_at 6.41163426290566 6.91230438281706 6.63596999832775 6.9360381101382 7.60510351889621 6.81958399228749 7.60906250902691 6.44257480820312 4.79395542952289 5.69961955274435 5.55278221485697 5.20409846022009 5.62540602956782 5.78866147694615 4.88214005912389 5.77736596727992 5.82849129245473 5.52249515447013 5.13294935867352 0.272654528740044 0.264244554800439 0.277234791956349 0.270041659948722 0.275496656176681 0.271469524563173 0.269581508582242 0.273641936763662 0.287111066480224 0.278204405258196 0.264244554800439 0.264244554800439 0.26815589981963 0.272806631348642 0.267447740479467 0.269808502669166 0.267038569425220 0.272692683623915 0.26829463680186 2 2 - 18830551 18831443 18831090.909 18830245 18832809 - gene protein_coding_gene FALSE TRUE AT2G45690.1 SSE1 (SHRUNKEN SEED 1) Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica. similar to putative shrunken seed protein [Brassica napus] (GB:AAZ20121.1); contains domain FAMILY NOT NAMED (PTHR13299); contains domain SUBFAMILY NOT NAMED (PTHR13299:SF3) 0.234559274529467 1.30938308778542 0.217378664264098 1 0.191674037451452 12.2872947122479 0.234559274529467 0.263500712171294
AT3G06200_at 5.60302040981985 5.57164908878385 5.38162866890504 5.68290804084211 6.13291406429432 5.61968450629574 5.83572370332596 6.32315565919756 5.12495375236514 4.79682074088451 5.2059592655196 5.20241296798657 5.42322674158656 5.93225050777783 5.36053307242857 5.90590877695484 5.25703750391735 5.26126133194345 5.12283788852431 0.196065334255336 0.194286246026449 0.208346602920126 0.192270766775656 0.197361622922511 0.193412889888585 0.20421632682717 0.195986698082419 0.211369110826989 0.198212421905287 0.198768458728272 0.195236884675285 0.192270766775656 0.192270766775656 0.192270766775656 0.192270766775656 0.201793008749408 0.200632022132138 0.192270766775656 3 3 + 1877947 1878463 1878203.545 1877600 1879354 + gene protein_coding_gene FALSE TRUE AT3G06200.1 guanylate kinase, putative similar to GK-1 (GUANYLATE KINASE 1), guanylate kinase [Arabidopsis thaliana] (TAIR:AT2G41880.1); similar to Guanylate kinase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95663.1); similar to Os03g0320900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049956.1); contains InterPro domain Guanylate kinase/L-type calcium channel region; (InterPro:IPR008145); contains InterPro domain Guanylate kinase; (InterPro:IPR008144) 0.149799790946098 1.30922018527722 0.217431930499986 1 0.191489522611641 10.9980578001525 0.149799790946098 0.133234999265919
AT3G18880_at 2.11444885221349 2.26007309357879 2.39915449579610 2.55228162329962 2.13124287872331 2.27530236447773 2.33786729776754 1.84054627105418 2.50934732686674 3.26710625325309 2.79450625034994 3.14269098292365 2.5491491300535 2.81776544505425 3.00035625525133 2.85176890032586 2.42863334002916 2.85363526642878 2.45589903452383 0.222278423691697 0.227022554902136 0.234506711300742 0.226896265173834 0.236386094887514 0.237705162053473 0.226740712627736 0.236073687489086 0.23676885305456 0.225288301061892 0.223591768642105 0.229877462468070 0.229555025810482 0.226918885407173 0.227801170294210 0.224402439652058 0.232520746123833 0.228351669786139 0.226562638182702 3 3 + 6509611 6509993 6509750.545 6509546 6510631 + gene protein_coding_gene FALSE TRUE AT3G18880.1 ribosomal protein S17 family protein similar to EMB1129 (EMBRYO DEFECTIVE 1129), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G49400.1); similar to ribosomal protein S17, putative [Medicago truncatula] (GB:ABE91522.1); similar to Os08g0359600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061632.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) 0.130978560004099 1.30919394153318 0.217440512741962 1 0.191459798615338 5.01332997687215 0.130978560004099 0.0967769701968372
AT1G11240_at 6.04717768860245 6.09121425847452 6.30253609776994 5.89226004495137 6.02908383021338 6.04297623265443 5.92031519426544 5.94712924388591 5.36963846928757 5.43861529351781 5.82686053976751 5.94351790858584 5.45686496630618 5.37993248815452 6.14361138263193 5.60057449947426 5.84306841244439 5.70180735285729 5.87670937470357 0.253077433698715 0.258416585145493 0.249761143542965 0.245611305803363 0.250577786690617 0.256169860975821 0.245151928717907 0.247122342657243 0.253847148433912 0.242783559719666 0.250515408401215 0.242783559719666 0.250642328964587 0.247484481244570 0.256081018926523 0.243018672623501 0.244858275413100 0.25762593260239 0.246566082754214 1 1|0 -|/ 3766938 3768170 3767488.889 3766754 3768294 - gene protein_coding_gene FALSE TRUE AT1G11240.1 similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to Os03g0353500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050128.1); similar to hypothetical protein SPAC29A4.09 [Schizosaccharomyces pombe 972h-] (GB:NP_594873.1); contains domain gb def: Hypothetical protein (PTHR14577:SF5); contains domain FAMILY NOT NAMED (PTHR14577) 0.120315134849142 1.30880881252715 0.217566489812829 1 0.191023644971249 11.6834286103259 0.120315134849142 0.0715989806526021
AT4G27500_at 9.72754610617023 9.91491457930936 9.72287975056153 9.80188335357834 9.8876738363151 9.29986016356375 9.07116717411928 9.20228504513707 9.34842049994184 9.19543122470497 9.573059985274 9.70132406596137 9.29755507637053 9.35592135879914 9.1201379049175 9.2906720786328 8.87324261573004 9.2774211968646 9.16278291370973 0.122606394784645 0.121006404898799 0.120448614352433 0.116820862129227 0.121771235393594 0.121698816682013 0.117102546944819 0.116820862129227 0.130235023985136 0.120063708689887 0.120675570639128 0.118885694215339 0.116820862129227 0.123859474771900 0.119391699129344 0.117049034032912 0.122599498289833 0.129138198272107 0.116820862129227 4 4 + 13745219 13745881 13745579.091 13743116 13746217 + gene protein_coding_gene FALSE TRUE AT4G27500.1 PPI1 (PROTON PUMP INTERACTOR 1) interacts with H+-ATPase, and regulates its activity similar to PPI2 (PROTON PUMP INTERACTOR 2) [Arabidopsis thaliana] (TAIR:AT3G15340.1); similar to Chorismate mutase; Prefoldin; tRNA-binding arm [Medicago truncatula] (GB:ABE89096.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.137358977843631 1.30880413671274 0.217568019656513 1 0.191018350227748 18.8518820834798 0.137358977843631 0.110004157424783
AT3G09770_at 7.84874334609867 8.10633762526065 8.25224621291206 8.32353632231118 8.6843843103191 8.56386750167589 8.29174976617534 8.5665201968808 7.66952436914802 8.28415083583768 8.06395958286448 7.84425976024285 8.35605557176823 8.08121443611277 7.40492013891157 8.49238718640077 8.33240647476317 7.98696355488292 8.29799231799072 0.169129712737824 0.167198468923918 0.156375951301687 0.160624023084109 0.164547198610518 0.167700865579407 0.164313531801629 0.167790402450114 0.191562504830791 0.165433034937929 0.156768751925659 0.163124578786386 0.160935472199728 0.172337542612146 0.165784035024977 0.156375951301687 0.178390876312963 0.175129385240136 0.159982653666957 3 3 - 2996490 2997064 2996820 2996274 2998195 - gene protein_coding_gene FALSE TRUE AT3G09770.1|AT3G09770.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03200.1); similar to Os10g0204100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064306.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95025.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03200.1); similar to Os10g0204100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064306.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95025.1); contains domain MAHOGUNIN (PTHR22996); contains domain RING/U-box (SSF57850); contains domain no description (G3D.3.30.40.10) 0.119526258559284 1.30853639199321 0.217655635721804 1 0.190715186883844 16.4067531664886 0.119526258559284 0.0695370125097761
AT1G67710_at 2.41253523890631 2.46278467989967 2.18597377021351 1.98751747602506 2.11962809469766 2.69156415378320 2.40721326245447 2.26315292862484 2.67503891639268 3.26613356662171 3.00707673593709 2.71484001344483 2.95719688519028 3.10010574859184 3.03970759799066 2.6851972395399 2.74582012413162 3.04340001157227 3.19110906229106 0.221459486039576 0.213999063152456 0.214970268535194 0.221739004363313 0.222624439892138 0.218271239914067 0.217361975252860 0.216317208846129 0.225472317707564 0.220989209663632 0.216713883990525 0.213999063152456 0.220252192994981 0.21880302974678 0.220975593346779 0.21566128205432 0.225481544785365 0.228928254813012 0.222157234369538 1 1 - 25380682 25381139 25380899.455 25380414 25382807 - gene protein_coding_gene FALSE TRUE AT1G67710.1 ARR11 (RESPONSE REGULATOR 11); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-component response regulator ARR11 (Receiver-like protein 3) (ARR11) [Arabidopsis Thaliana] (GB:Q9FXD6;GB:O81712;GB:Q9MAY2); similar to ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT3G16857.2); similar to Response regulator, RegA/PrrA/ActR type [Medicago truncatula] (GB:ABE84620.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.136338228838400 -1.30845683026536 0.217681676870825 1 0.190625108762360 5.29417714706807 -0.136338228838400 0.108041304777705
AT1G62910_at 1.77175640202012 1.51534346703824 1.50363787480818 1.57588223440901 2.00392005149697 1.72078031888885 1.68785564096224 1.68575946039584 1.41173612408616 1.31838879069877 1.69125642509860 1.23522247780395 1.2635990690935 1.58089458096781 1.65641007999168 1.32538668192473 1.88752721603080 1.44961077218416 1.19904286936164 0.179477680452614 0.185361251678178 0.184758242953569 0.182383372083909 0.178367086563236 0.181485595484939 0.191434584465330 0.179005632911286 0.189133662070768 0.179750188607620 0.176088185161677 0.179346508359938 0.183851705316850 0.184786414568894 0.178198411641786 0.181454215611202 0.181496008806327 0.178964953566663 0.181910781073513 1 1 + 23306295 23306413 23306365.364 23302722 23306827 + gene protein_coding_gene FALSE TRUE AT1G62910.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63150.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63400.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.118696097734012 1.30838738468198 0.217704409020690 1 0.190546487086357 3.09359743505364 0.118696097734012 0.0672778451309255
AT2G35040_at 7.2805591581939 7.58962926819835 7.32391515985752 7.4270283876857 7.54554913139616 7.5865839556463 8.11632852139996 8.26365636204594 6.9356792902185 7.34248286578485 7.76305462138912 7.7779892209791 7.4897418104021 7.50627596576111 8.08583445674115 7.46361409114573 7.80775336505627 7.44562270324789 6.99726793052699 0.195085278278433 0.189433997480418 0.194614113642993 0.193169577665299 0.188287106175522 0.187912491154629 0.191617492033311 0.189251820415955 0.18931890834977 0.189900704058812 0.195279618754414 0.185723654060922 0.186001564899689 0.191012560125113 0.189793216992629 0.188763289854341 0.194729815520268 0.189384534515483 0.197696802653163 2 2|0 -|/ 14772428 14773154 14772813.9 14772239 14775367 - gene protein_coding_gene FALSE TRUE AT2G35040.1 AICARFT/IMPCHase bienzyme family protein similar to phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Nicotiana tabacum] (GB:AAG40879.1); similar to putative aminoimidazolecarboximide ribonucleotide transformylase [Oryza sativa (japonica cultivar-group)] (GB:BAD11555.1); similar to aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase [Vigna unguiculata] (GB:AAO40252.1); contains InterPro domain MGS-like; (InterPro:IPR011607); contains InterPro domain AICARFT/IMPCHase bienzyme; (InterPro:IPR002695) 0.116950790841873 1.30818068687022 0.217772080516897 1 0.190312494980054 15.0213041471449 0.116950790841873 0.0622867033476079
AT1G55960_at 9.75180764219204 9.73189212820012 11.2964272268856 11.2288461771988 11.2806201799480 11.1394843395570 12.0516658095705 12.0515237685435 11.8978276861608 12.0819231467544 11.8149711273853 11.4018052283885 12.1200080447178 12.0609295335476 11.0513035806051 12.4933820886659 12.3909546427064 11.9966942154140 12.1387889892426 0.0670085235108116 0.0612682047996490 0.0623940119260863 0.0604448196091416 0.0609480851221668 0.0642534166129759 0.0641558667934543 0.0603401062937352 0.0676111752213622 0.0621777743559857 0.0601370132091108 0.0612391557428457 0.0599975538655078 0.0608018048259345 0.0651906622234877 0.060566691342337 0.0698251176966855 0.0630957485984392 0.0619522940267459 1 0|1 /|- 20931639 20932139 20931835.4 20931308 20933682 - gene protein_coding_gene FALSE TRUE AT1G55960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13062.1); similar to Lipid-binding START [Medicago truncatula] (GB:ABE91086.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) 0.108182463698534 1.30805993605311 0.217811621525402 1 0.190175811177735 23.0444180748777 0.108182463698534 0.0272983360164178
AT1G66620_at 1.48924893143636 1.41470218083243 1.37021915289104 1.70965010835548 1.29450759904034 1.15305255344334 1.86899976867971 1.47393085440463 1.47411200841178 1.26010159435796 1.45498934995574 1.89397533225202 1.60390226048598 1.67822727015129 2.23506611138425 1.52163650831161 1.32732677216113 1.82039899816942 1.02372194213501 0.216876133972452 0.216779338958015 0.212950691090739 0.206106552731874 0.206106552731874 0.210700091259221 0.206106552731874 0.206106552731874 0.223905166265922 0.219520325103269 0.216032685908919 0.212800985150975 0.209808475945453 0.210102000453747 0.210487816883757 0.206106552731874 0.216795635594251 0.220242397482089 0.212969350327656 1 1 - 24856606 24857018 24856844.182 24856469 24857816 - gene protein_coding_gene FALSE TRUE AT1G66620.1 seven in absentia (SINA) protein, putative similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT1G66630.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.129716031659141 1.3080454764799 0.217816356845863 1 0.190159444270992 2.94408164713234 0.129716031659141 0.0942885232638317
AT4G25540_at 1.70283104405537 1.59148044945968 2.26403338934626 1.96766196275070 1.83271065233128 1.73370809811912 2.11930510455368 2.06606408511377 2.14314984177482 2.62246374568785 1.82564734999897 1.95840812545564 1.71248919095614 1.98958716282823 2.25440028702100 1.83744098457329 2.37003428609178 2.55262602219235 2.3543019816603 0.193835244731608 0.187167909770735 0.199506366853925 0.195151816051433 0.184188137945086 0.192694133211019 0.184861585056183 0.186896507029199 0.196503829417412 0.184350927497563 0.191910866944394 0.184700894910258 0.191357184592558 0.186621402283205 0.184188137945086 0.187222105028300 0.206498478679129 0.184348315318613 0.194489761480784 4 4|0 -|/ 13042794 13043400 13043193.3 13042566 13048222 - gene protein_coding_gene FALSE TRUE AT4G25540.1 MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G). Identical to DNA mismatch repair protein MSH3 (AtMsh3) (MSH3) [Arabidopsis Thaliana] (GB:O65607;GB:O81818); similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to DNA mismatch repair protein [Petunia x hybrida] (GB:AAT67046.1); similar to OSJNBa0032F06.21 [Oryza sativa (japonica cultivar-group)] (GB:CAE03438.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain MutS IV; (InterPro:IPR007861); contains InterPro domain MutS III; (InterPro:IPR007696); contains InterPro domain MutS II; (InterPro:IPR007860); contains InterPro domain DNA mismatch repair protein MutS, N-terminal; (InterPro:IPR007695) -0.115558829363386 -1.30771642045023 0.217924141222444 1 0.189787017632755 4.1276665311399 -0.115558829363386 0.0581399516404218
AT1G76100_at 11.6931426099769 11.7416312724042 11.4257838593248 11.4434724779754 11.8062382007080 11.6621952101839 12.0855785491188 12.1296781750794 12.3317759405304 12.2839117596804 12.5332224424103 12.6296456282083 12.3147311858724 12.3167272078360 12.6188232828554 12.3458863752494 12.0201938089124 12.4301916022079 12.2526722515790 0.0783532682619883 0.0751675120338151 0.0756282904901116 0.07868279982983 0.078182169118791 0.0758051610815527 0.074113607300437 0.0744399822024184 0.0762984479180576 0.076795579263823 0.076360639333156 0.074113607300437 0.0764246258979283 0.0800460048916165 0.078646032774402 0.074113607300437 0.0756378609558694 0.0748159602403864 0.075674193089076 1 1 - 28559115 28559520 28559280.909 28558881 28559662 - gene protein_coding_gene FALSE TRUE AT1G76100.1 plastocyanin Identical to Plastocyanin minor isoform, chloroplast precursor (PETE) [Arabidopsis Thaliana] (GB:P11490;GB:P93656;GB:Q52K91;GB:Q9SGS3); similar to DRT112 (DNA-damage-repair/toleration protein 112), copper ion binding / electron carrier [Arabidopsis thaliana] (TAIR:AT1G20340.1); similar to plastocyanin (GB:AAA32834.1); contains InterPro domain Plastocyanin; (InterPro:IPR002387); contains InterPro domain Blue (type 1) copper protein; (InterPro:IPR001235); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Blue (type 1) copper subtype; (InterPro:IPR011572) -0.108180420083012 -1.30753652824349 0.217983084554862 1 0.189583443035651 24.093780548825 -0.108180420083012 0.027557126934779
AT2G26520_at 1.16326689737685 1.17824937102777 0.570365423941082 1.20331730472776 0.9740373900218 1.13430728010468 1.40671661969828 0.89706084290045 2.26443767318395 1.49195745162800 2.27349880052782 1.67328525711513 1.54917539033283 2.23612639628457 1.94728820019945 1.77159123701264 1.01340446460306 1.782827565345 1.94576469045954 0.225615810559081 0.220307136908413 0.233384525086506 0.243376766982916 0.229668590210781 0.227123404824971 0.229276038083031 0.234150683269059 0.227673624631328 0.224814995058006 0.228774763896900 0.223807055482141 0.225835996733330 0.221434790815551 0.230120577908785 0.220312977003255 0.227860083978029 0.224818737446402 0.230492687392953 2 2 + 11287400 11287741 11287542.455 11287103 11288018 + gene protein_coding_gene FALSE TRUE AT2G26520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57500.1) -0.155318428774137 -1.30701990823589 0.218152432591291 1 0.188998921132676 2.90672494240053 -0.155318428774137 0.143362812559464
AT3G17340_at 4.45382778467636 4.49923674146966 3.89099785465409 4.17856678567385 4.09441077309263 3.8510605505944 3.80860656200767 4.48668794243928 4.70043560092541 4.04409499910225 4.1801811586796 4.62178246423673 4.28545146068783 4.36272135844538 4.21241600881872 4.85020470148122 4.1558906266168 3.98719313436938 4.22761503821435 0.28811917482073 0.300021056402420 0.319378009163348 0.313496354068849 0.291887033604520 0.294812378388858 0.303862873906935 0.288862709229437 0.295145836024716 0.296148074459736 0.290664652596198 0.295911474190409 0.308712197824084 0.292833984726513 0.293686492170590 0.288467110217559 0.295203189630059 0.291005026868035 0.305306725121464 3 3|0 -|/ 5921275 5922041 5921756.286 5920461 5926923 - gene protein_coding_gene FALSE TRUE AT3G17340.1 protein transporter similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to Os11g0695900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068508.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96559.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95547.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) -0.150199599279105 -1.30667196180041 0.21826655026532 1 0.188605334319083 8.4859387044498 -0.150199599279105 0.134468212402222
AT3G02860_at 5.43816518797614 5.6155457728293 5.81490745822022 5.48754320628507 5.92010198808825 5.10518538940184 6.1735667950446 5.75547858193064 5.74797251233585 5.9972559841765 5.82862388599016 5.95666646107761 5.41083246683826 5.71824296313764 5.76939951353041 5.58978086255242 5.53378681763856 5.53556292326231 5.79910040495634 0.194222643080382 0.183328048826209 0.19434963506639 0.180195537933478 0.185916315059998 0.198949585505166 0.193122066317768 0.184335623266164 0.193908818238396 0.190039370367545 0.181605546932171 0.186770870352578 0.180481616491123 0.190605846728017 0.186390307851684 0.180832376114249 0.191632242537820 0.188419146600484 0.193701970849353 3 3 - 625327 626197 625877.455 625170 627374 - gene protein_coding_gene FALSE TRUE AT3G02860.1|AT3G02860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to CTV.12 [Poncirus trifoliata] (GB:AAN62341.1) -0.172001110507898 -1.30665413806308 0.218272397321236 1 0.188585174622255 11.4217976077602 -0.172001110507898 0.171098301758361
AT4G08150_at 1.36280276092728 1.08187074240275 1.30974113234455 1.35784524832134 1.20440741229141 1.22937807006894 1.47370120201553 1.19539753447506 1.05366468334075 1.62928662273780 0.683089552112684 1.06922011309987 1.07545062024493 1.58184140121179 0.921070226478774 1.00497535218732 1.02928617813009 1.29973138752587 1.27208962237414 0.215940590364248 0.206890100408802 0.213033990214260 0.206870835065107 0.208052150931762 0.210769765226584 0.209707522863172 0.209796787421048 0.212919925450067 0.225763445193264 0.210096203228442 0.206870835065107 0.209483678337189 0.212674814491719 0.208239457594471 0.210064568927288 0.206879248819190 0.215696817291568 0.208306699189115 4 4|0 -|/ 5147971 5149741 5148770 5147697 5150963 - gene protein_coding_gene FALSE TRUE AT4G08150.1 KNAT1 (BREVIPEDICELLUS 1); transcription factor A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate. Identical to Homeobox protein knotted-1-like 1 (KNAT1) (KNAT1) [Arabidopsis Thaliana] (GB:P46639); similar to STM (SHOOT MERISTEMLESS), transcription factor [Arabidopsis thaliana] (TAIR:AT1G62360.1); similar to BREVIPEDICELLUS [Cardamine hirsuta] (GB:ABG66654.1); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain KNOX1; (InterPro:IPR005540) -0.119181983237787 -1.30661936462383 0.218283805076766 1 0.188545844373197 2.47760805286826 -0.119181983237787 0.0690731535223539
AT4G12430_at 4.8444092192556 4.67180500689734 4.40802127788358 4.31920891343739 5.10464469663863 4.49106761094743 4.6935184168165 4.54470791799655 3.17190251632946 2.92774464250964 3.58601003061943 4.3453335052635 3.53125271460524 3.56763209868687 3.14792828339167 3.96323738043239 4.09381675187721 2.99016469463986 3.70063787064670 0.272264237739733 0.262871730815677 0.266558651616281 0.265706205200291 0.279915799162642 0.27580313534772 0.268313310392652 0.265041496990372 0.273461612325473 0.277511490291069 0.266749593193398 0.261863980206668 0.273273552429148 0.267839530156007 0.266377252770864 0.261863980206668 0.266869129001535 0.265679295183393 0.274237284037055 4 4 - 7365624 7366403 7366044.091 7365254 7368727 - gene protein_coding_gene FALSE TRUE AT4G12430.1 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G22590.1); similar to trehalose-phosphate phosphatase [Nicotiana tabacum] (GB:AAU03490.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) 0.139267870214756 1.30611785689737 0.218448383838892 1 0.187978699880126 8.09463968695152 0.139267870214756 0.114307977069453
AT1G29520_at 2.65157808094431 2.15439438150684 2.13124110710193 1.96306175875081 2.38435953784625 1.95747164244023 2.71917675069809 2.99802797504751 2.57539800774446 2.63754532964397 3.87661731108458 4.49173458169265 3.4396448109789 3.24147996424408 3.95766113019699 3.79676351602155 3.02993305649537 2.95700496542197 3.14356036673961 0.22967417315902 0.235066374873889 0.235035521673763 0.248005476384620 0.232027751967544 0.233057272899628 0.228948536893387 0.232888350842712 0.240901098731295 0.242256143882196 0.233873400594819 0.24269636149908 0.238980173796669 0.228948536893387 0.235586545711564 0.242871736879156 0.251390138042569 0.245647263219993 0.236523807161813 1 1|0 +|/ 10323733 10324131 10323983.75 10323641 10324729 + gene protein_coding_gene FALSE TRUE AT1G29520.1 AWPM-19-like membrane family protein similar to AWPM-19-like membrane family protein [Arabidopsis thaliana] (TAIR:AT5G46530.1); similar to AWPM-19-like [Medicago truncatula] (GB:ABE81135.1); contains InterPro domain AWPM-19-like; (InterPro:IPR008390) 0.145796448396640 1.30607590317822 0.218462156318152 1 0.187931262277042 5.56209198015518 0.145796448396640 0.126633831285285
AT1G49910_at 1.07441165078863 0.818503989222599 1.03980882500254 1.18385223748546 1.33564296978702 1.1190340710134 1.44072730635385 0.811197967324146 1.16309479225317 1.25027579809436 1.09040133638221 1.13098863769641 1.13068590221746 1.08089189818982 1.67956899702107 1.21453027470405 1.27767282645007 1.41470713126755 0.871689555755705 0.194914982707895 0.195491341177819 0.195379628736279 0.199154673575921 0.198755467457203 0.193912114107801 0.192810329782498 0.190200971960908 0.192743373085840 0.190200971960908 0.200482125696117 0.196721340822815 0.191584956885640 0.19747451779348 0.197165587060175 0.197118105843785 0.192985012744342 0.195099502448367 0.206238948023894 1 1|0 +|/ 18483456 18484599 18484057.125 18482693 18485143 + gene protein_coding_gene FALSE TRUE AT1G49910.1 WD-40 repeat family protein / mitotic checkpoint protein, putative similar to WD-40 repeat family protein / mitotic checkpoint protein, putative [Arabidopsis thaliana] (TAIR:AT3G19590.1); similar to putative mitotic checkpoint protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57743.1); similar to Os03g0448600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050471.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.145392562094899 1.30592561756700 0.218511497611113 1 0.187761341263206 2.27662283921828 0.145392562094899 0.125921955782150
AT1G63160_at 2.59356823943712 3.19640518239967 2.76893819395181 3.03311848770928 2.80119610057950 2.97543121439571 3.02994344601267 3.22956026950416 2.48797694893144 2.12587328229857 2.70636370161157 2.81668297725225 2.5860304302862 2.74281403851179 3.34410501421325 2.62024185627004 2.66541832400208 3.13215764017837 2.65112083867999 0.194091304389487 0.192014818253097 0.193156129808083 0.199338230912368 0.193843636778993 0.201011320881449 0.194947836800233 0.197650013173684 0.201732778822994 0.204137241293547 0.194812968012710 0.192829938531558 0.199854409958395 0.199028293703648 0.19356534031145 0.194556229661883 0.193224368585202 0.193703653581732 0.202111225534821 1 1|0 -|/ 23425780 23426539 23426224.333 23425529 23427493 - gene protein_coding_gene FALSE TRUE AT1G63160.1 replication factor C 40 kDa, putative similar to EMB1968 (EMBRYO DEFECTIVE 1968), ATPase [Arabidopsis thaliana] (TAIR:AT1G21690.1); similar to replication factor C 40kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB69675.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.143685719654015 1.30579253340342 0.218555199011808 1 0.187610880667613 5.57771202729575 0.143685719654015 0.122784492384782
AT1G49015_at 1.08520916088813 1.08590581003411 1.36210653561889 1.44374896677584 1.34939035700498 1.54127421113458 1.06237471586796 0.99239229197509 1.55967661204537 1.69458039192954 1.61533205773803 0.989610669103785 1.10381484980921 0.737631901176755 1.22269696151491 1.30045112304515 2.17704909570236 1.46583783181502 1.16830772527277 0.197184396680909 0.195596114992401 0.194392242377912 0.195445978164157 0.193678268295143 0.197884421186759 0.193678268295143 0.196235407840878 0.204919909563855 0.204486203128871 0.200015127437212 0.193678268295143 0.203311018552668 0.194772496190107 0.202272300392612 0.193678268295143 0.203131400551457 0.199730543118361 0.198641641754120 1 1 + 18138411 18138932 18138690.273 18138196 18138980 + gene protein_coding_gene FALSE TRUE AT1G49015.1 eukaryotic translation initiation factor-related similar to EIF3B-2 (eukaryotic translation initiation factor 3B-2), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G25780.1); similar to TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G27640.2); similar to Translation initiation factor eIF-3b [Medicago truncatula] (GB:ABE81765.1); similar to Os10g0569200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065446.1); contains InterPro domain Translation initiation factor eIF-3b; (InterPro:IPR011400) 0.110012170548924 1.30571933433510 0.218579238750681 1 0.187528128817596 2.6406709083228 0.110012170548924 0.0380653097509103
AT4G39280_at 9.02164030166253 9.14256532755269 8.96912131888089 9.14446086053965 9.24873790214045 8.73647356582683 9.29534029733427 9.36320925982665 8.89743589361982 9.08356187320494 8.7888352328276 9.01847336842078 8.80771598454851 8.55670535576115 9.08432497626685 8.8656043373248 8.85410123660707 9.12232419581523 8.92129143530533 0.101798106433504 0.103043607087815 0.113478261854555 0.104122954870224 0.102096771062891 0.108840838911759 0.101376528957958 0.105767297515485 0.112293793160112 0.101138470115972 0.105911494069829 0.101138470115972 0.104838720742959 0.118186950232689 0.103212377405898 0.105883794557733 0.112888162471349 0.105063310397395 0.102041329349057 4 4|0 -|/ 18281642 18282656 18282196.444 18281438 18284894 - gene protein_coding_gene FALSE TRUE AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative Identical to Probable phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) [Arabidopsis Thaliana] (GB:Q9T034;GB:Q8LPR1); similar to phenylalanyl-tRNA synthetase class IIc family protein [Arabidopsis thaliana] (TAIR:AT3G58140.1); similar to Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II [Medicago truncatula] (GB:ABE82725.1); similar to Os10g0400800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064545.1); similar to phenylalanyl-tRNA synthetase alpha chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47545.1); contains InterPro domain Phenylalanyl-tRNA synthetase, alpha subunit; (InterPro:IPR004529); contains InterPro domain Phenylalanyl-tRNA synthetase, class IIc; (InterPro:IPR002319); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.130579766421973 -1.30545761439526 0.218665209486757 1 0.187232280156279 18.0425387642154 -0.130579766421973 0.096723123897722
AT2G37740_at 1.18422134256766 1.63728900959386 1.45594637102981 1.58182211814993 1.22031612039660 0.506299298695019 1.69672124317903 1.49055505656638 1.75145915749623 1.20414994982485 1.40195252981163 1.46129484739400 0.914307474964096 1.61752179333048 1.48629233637440 1.03568073816638 1.51376701901596 1.59016441895863 1.20585295696273 0.209460761845492 0.217015313385267 0.218001802728278 0.212617522415581 0.215809538685798 0.223577408037386 0.209460761845492 0.210003941804414 0.215041755595689 0.212781759732423 0.209460761845492 0.211510557211359 0.209460761845492 0.214553064519134 0.219391808835045 0.210982310994506 0.228125629732262 0.220420469384311 0.223508055847858 2 2 - 15834798 15835293 15835072 15834784 15835698 - gene protein_coding_gene FALSE TRUE AT2G37740.1 zinc finger (C2H2 type) family protein similar to RBE (RABBIT EARS), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G06070.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE82910.1) -0.160316031292443 -1.30545553854650 0.218665891480108 1 0.187229933780869 2.72903465311223 -0.160316031292443 0.152193635460836
AT2G24230_at 3.67966723576964 3.9129487907417 2.52032284546972 2.41366303064504 2.39936785141868 2.74987873177732 3.04430318247048 3.47927230372245 2.37166399114704 3.00396465811886 3.11164946678184 4.17965442556365 2.94976732320899 3.62565125099594 3.98309281650265 3.34601864257061 2.89344961761892 3.54425680834149 2.77335012145801 0.220366493373320 0.209765208307181 0.207871368930389 0.205901734311992 0.20429687762411 0.209725897632971 0.20429687762411 0.208082939402364 0.213074939195631 0.213614272765739 0.204545325094247 0.222786827848056 0.218915031819885 0.212655878540219 0.206876686535352 0.20429687762411 0.211055823666876 0.209470451323833 0.209962498153772 2 2 - 10309100 10309618 10309384.273 10308897 10311892 - gene protein_coding_gene FALSE TRUE AT2G24230.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58150.1); similar to Protein kinase [Medicago truncatula] (GB:ABE85425.1); similar to Os08g0276400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061434.1); similar to Protein kinase [Medicago truncatula] (GB:ABE88713.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.135186738154167 -1.30531940313147 0.218710620824949 1 0.187076062822187 6.11018739692987 -0.135186738154167 0.106376212504508
AT3G61700_at 6.78918878672131 6.39424481534654 6.75462602725244 6.5295132723739 6.99328340475837 6.757577500056 6.78154481520594 6.86218635593205 5.7108754586453 6.13858460696261 5.72775876541724 6.28146102981907 6.00450486278957 6.0997757419387 6.25259082368966 6.43499205304984 6.31047714714962 6.18764909690483 6.029343230299 0.182128181077187 0.182128181077187 0.194250094416874 0.185216792038586 0.189522016859879 0.190042383806157 0.193102281104079 0.183516390090340 0.19835231708704 0.182128181077187 0.187957879008378 0.187693637761925 0.186895410805694 0.195493090946182 0.182128181077187 0.188156586137038 0.185138466627470 0.18915460638318 0.185797926747959 3 3 + 22847836 22848869 22848556.444 22846182 22850064 + gene protein_coding_gene FALSE TRUE AT3G61700.1|AT3G61700.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46420.1); similar to uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum] (GB:AAU93592.2); contains InterPro domain Conserved hypothetical protein 1589, plant; (InterPro:IPR006476) 0.127379474633950 1.30520857834458 0.218747039522279 1 0.18695080830198 12.7937717665710 0.127379474633950 0.0897079097301412
AT1G14480_at 1.96688685717840 2.68996618825758 2.93378792796349 3.26186377824715 1.74296989875013 1.79775093805979 1.87651554295659 1.92113465446935 1.78348064125812 1.89320497075924 1.49157156376290 1.96917498862837 1.73581871082381 1.87832711254279 1.80563671413353 1.69885709662188 2.17295018354587 2.30569172929110 2.01957240376232 0.217351362352521 0.225869986607069 0.228458856703057 0.241301867976504 0.223688481040307 0.219391895827103 0.214947136547498 0.218942669750047 0.228719650260949 0.214947136547498 0.220158232821901 0.214947136547498 0.227383080131196 0.225879571467108 0.221791773723979 0.216017755385759 0.220538495328286 0.218255969105033 0.220078619252055 1 1 + 4957303 4957827 4957598.091 4956252 4957966 + gene protein_coding_gene FALSE TRUE AT1G14480.1 protein binding similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G14500.1); similar to Ankyrin [Medicago truncatula] (GB:ABE88815.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.151984082765939 1.30507466525376 0.218791052020716 1 0.186799469338093 4.16436256540798 0.151984082765939 0.137952825047934
AT3G13170_at 0.868546248158337 0.784670598356731 0.880567144260844 0.744637953493421 0.348519372621863 0.729978269562459 0.538104202412452 0.604727066590491 0.916001057597434 0.914228313367156 0.719814350174103 0.648722430560762 0.600743070550138 0.323070303903630 0.575886668260862 0.672958361620874 1.05948853849325 0.863387567812693 0.871328465780003 0.199157514169444 0.207124149798792 0.203210483013055 0.211252455881596 0.200753304153434 0.210957517439835 0.199052129694144 0.205361917653973 0.205336264387891 0.208603533017251 0.200906712842289 0.203356642843819 0.201453408071569 0.208985350851608 0.207719962673213 0.199052129694144 0.203830260360738 0.210692464379908 0.204194701374698 3 3|0 -|/ 4231567 4232886 4232087.7 4231567 4234199 - gene protein_coding_gene FALSE TRUE AT3G13170.1 DNA topoisomerase VIA (SPO11-1) Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. similar to RHL2 (ROOT HAIRLESS 2), ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT5G02820.1); similar to putative topoisomerase 6 [Oryza sativa (japonica cultivar-group)] (GB:AAP68363.1); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A, N-terminal; (InterPro:IPR013049); contains InterPro domain Meiotic recombination Spo11; (InterPro:IPR013048); contains InterPro domain Spo11/DNA topoisomerase VI, subunit A; (InterPro:IPR002815); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.120298355693840 -1.30499000293548 0.218818881278695 1 0.186703795725946 1.47923295210053 -0.120298355693840 0.072489325805734
AT1G67270_at 2.33918307432483 2.16301926044437 2.77915242542203 2.80823064058867 2.18284867238286 2.47483085798418 2.1697609950294 2.47381314446707 2.96845835462123 2.04100328088695 2.18214422089747 2.01692992269597 2.49095849384783 2.78424789781868 2.51704843367441 2.63464799780832 2.36662182921648 2.36722818366761 2.33747557183407 0.184860144429718 0.187270360574383 0.191434473088031 0.183459008997102 0.191548468336644 0.178380328152637 0.182728176555331 0.184452889435940 0.185767748864884 0.190855000486051 0.196446958003336 0.190529508309967 0.191050725668661 0.182730443208507 0.186089821805061 0.188188086713141 0.187481394806564 0.184325525660062 0.181456874541604 1 1|0 -|/ 25187085 25187936 25187615.9 25187032 25189456 - gene protein_coding_gene FALSE TRUE AT1G67270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67780.1); similar to Os11g0568300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068113.1); similar to PREDICTED: similar to cell division cycle associated 7 [Apis mellifera] (GB:XP_001121657.1); similar to Os05g0300700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055133.1); contains InterPro domain DDT; (InterPro:IPR004022) 0.122910416933639 1.30479965874723 0.218881459709289 1 0.186488711141251 4.85833360461414 0.122910416933639 0.0792243680511227
AT3G47990_at 7.70921539653247 7.71200486786735 7.83666800096345 7.76343873807104 8.04417770503132 7.66928900523532 7.80666156800483 7.71383765279147 7.51897122488749 7.76644555512838 7.4464046099525 7.42688987298606 7.54771274933731 7.38081680976391 6.8182989836603 7.71318553351878 7.39315562494352 7.37006058678346 7.86630644036934 0.158367010948194 0.170724573385025 0.160256837182396 0.163841447724415 0.165080708820534 0.160553224713448 0.162420277927029 0.157187896338692 0.177686738750576 0.155762307026909 0.166428428140649 0.161114457793633 0.155762307026909 0.175743172039132 0.163690580338069 0.156837476188569 0.170533818946466 0.169763683796566 0.157335232095594 3 3 - 17724414 17725304 17724705.9 17724129 17727293 - gene protein_coding_gene FALSE TRUE AT3G47990.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G32600.1); similar to Os05g0145000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054629.1); similar to hypothetical protein T17F15.140-like protein [Hordeum vulgare subsp. vulgare] (GB:AAL85697.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.118605993033627 -1.30444091893605 0.218999440555848 1 0.186083403650947 15.3340649517271 -0.118605993033627 0.0680279011671987
AT4G12960_at 1.64415925116384 1.88058061612284 1.74816098981693 1.83469975081152 1.52207784908069 1.33382663185000 1.43487867775979 1.90007742126619 1.55490466995762 2.19945395617001 1.88174413048715 1.37071914497203 1.90250230121426 1.93233876818609 1.87061181218265 1.99411208821353 2.06626339043311 2.08028447083464 2.37577447681247 0.212751456446098 0.209209822355714 0.209551244341606 0.207141342705705 0.209773633640645 0.206292699315201 0.212443566387782 0.211950364503928 0.213426254891535 0.208427411208604 0.208495593458120 0.212486099174651 0.208230829889860 0.205192860682993 0.212285240716404 0.205192860682993 0.209592206662164 0.212643739438380 0.207383672730253 4 4|0 +|/ 7583425 7584366 7583861.333 7583269 7584627 + gene protein_coding_gene FALSE TRUE AT4G12960.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein [Arabidopsis thaliana] (TAIR:AT4G12900.1); similar to putative legumaturain [Oryza sativa (japonica cultivar-group)] (GB:BAD73620.1); contains InterPro domain Gamma interferon inducible lysosomal thiol reductase GILT; (InterPro:IPR004911) -0.130644186926488 -1.30406233867773 0.219124002994222 1 0.185655765716713 3.62765750563171 -0.130644186926488 0.0971625131758398
AT2G09840_at 0.987580221533543 0.715249975524108 1.17104153654968 1.23680298490760 0.585750681759165 1.25702122346575 0.790596210543161 0.779410447766473 1.13865279870353 0.821241444283025 0.805184116320014 1.07678674175675 0.976212534386248 0.441678659376863 1.21574968600106 0.791897386982192 1.53734588817091 1.15644280257841 0.903121119254353 0.194737716608441 0.202666331062813 0.204345395275137 0.199348193992679 0.196441265915295 0.192304256389819 0.203196201205504 0.197610202864572 0.199244873261443 0.195888463594153 0.202076159461615 0.192139271580696 0.199881055460307 0.201671570881188 0.192139271580696 0.192139271580696 0.20101314231569 0.19530308118653 0.198412673007722 2 2 - 3712048 3712451 3712249.455 3712042 3712533 - gene protein_coding_gene FALSE TRUE AT2G09840.1 similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G06904.1) 0.145134332847490 1.30374876721665 0.219227219880558 1 0.185301627110703 1.91768200076961 0.145134332847490 0.125892669988116
AT4G13190_at 2.31843143660899 2.26652199931144 1.74443207324788 2.06123167296021 1.78204308424977 2.21848250346532 1.76256365315938 2.20830162068543 2.67250159420579 2.41379926253280 2.36280899659433 2.33706291367070 2.47966348715677 2.50717075196779 2.48658861244354 2.29033740150431 2.58714680757033 2.36924276850390 2.49007556758942 0.242745306305553 0.245605156516420 0.240934905571821 0.241555806706692 0.241434619934790 0.243353521718206 0.23883498989204 0.245627324582689 0.250105449121379 0.246706901628993 0.251906357585357 0.246803555206727 0.24278780343308 0.243741540039575 0.245069435533410 0.253871485535105 0.246588026854056 0.252887654568445 0.241692215578828 4 4 - 7659456 7660171 7659743.636 7659431 7661102 - gene protein_coding_gene FALSE TRUE AT4G13190.1 kinase similar to kinase [Arabidopsis thaliana] (TAIR:AT3G24790.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT58829.1); similar to Os01g0936100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045326.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.142681717321697 -1.30331547366097 0.219369910733232 1 0.184812376956386 4.52173176822895 -0.142681717321697 0.121412157477210
AT4G01110_at 1.51864733514745 1.01379985343846 1.29949427387515 1.25376751550224 1.00870259802351 1.68807609982749 1.07031007255893 1.21928755947814 2.07181236226279 1.26564144834482 1.67550311392050 1.70243274707202 1.63100554219962 1.36548876416734 1.98792161679374 1.70574704795536 1.75908720492662 1.99073229550780 1.21649837925709 0.202872857982897 0.205648479573805 0.199660125259138 0.193218226651704 0.197322820848809 0.199561579353680 0.198293453748895 0.20376536153376 0.199139402630616 0.199256822350913 0.205037323358680 0.199892394566207 0.193218226651704 0.1937163150469 0.195998649259462 0.194917894332476 0.207299666823081 0.198196181321018 0.194151821471660 4 4 - 480355 480774 480631.4 479964 481160 - gene protein_coding_gene FALSE TRUE AT4G01110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46300.1); similar to Os01g0195400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042290.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV24918.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019) 0.158127322465496 1.30329917988921 0.219375278031223 1 0.184793981211578 2.88162259090947 0.158127322465496 0.148938102985086
AT3G26140_at 1.11916804931391 1.34796847825264 1.74078454828905 1.18747520968460 1.05132929958687 1.63982979970705 1.15864961781347 1.19960420345223 0.962133142373845 1.13937849777756 1.56783386744408 1.01180218799679 1.33272167872102 1.16477051139496 1.20544871852753 1.26195018156573 1.63365060818780 1.41499255659666 1.53008319986724 0.197194441566181 0.198604513647611 0.199501888032766 0.196739026056273 0.196739026056273 0.196739026056273 0.197845178638782 0.204314436167190 0.207945353156063 0.196739026056273 0.202134234198588 0.198089549263167 0.199394919285458 0.198532233179134 0.196741860076266 0.196739026056273 0.203731733876641 0.202546462701258 0.204651309912823 3 3 - 9561018 9561379 9561210.182 9560919 9564307 - gene protein_coding_gene FALSE TRUE AT3G26140.1 glycosyl hydrolase family 5 protein / cellulase family protein similar to glycosyl hydrolase family 5 protein / cellulase family protein [Arabidopsis thaliana] (TAIR:AT1G13130.1); similar to OSIGBa0158F13.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66880.1); similar to Os04g0480900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053105.1); similar to H0510A06.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67676.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547); contains InterPro domain Ricin B lectin; (InterPro:IPR000772); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) 0.156060901286802 1.30303634966826 0.219461871270414 1 0.184497267143554 2.57294010183441 0.156060901286802 0.145459725935226
AT1G65340_at 1.20998911793831 1.06349684254395 1.44785959753367 1.61705167133314 1.34674793290243 1.01503098073182 1.75410246325464 1.36547719853473 1.43082992413795 1.51348591479939 1.42058489052145 1.2215716881472 1.39374855611436 0.965444922879918 1.26469146856518 1.48924672298979 1.25251901725043 1.45886418321381 1.78735092452341 0.171503800677931 0.183900754953128 0.173236325993047 0.165435370448553 0.166011093378543 0.170324640210078 0.172775294905831 0.171459550624355 0.171931168385857 0.166370551618717 0.165435370448553 0.165435370448553 0.167661794459265 0.171446122413213 0.172246206399400 0.165435370448553 0.168104120678431 0.171846325640105 0.167693598054772 1 1 - 24271831 24272368 24272119.364 24271798 24273309 - gene protein_coding_gene FALSE TRUE AT1G65340.1 CYP96A3 (cytochrome P450, family 96, subfamily A, polypeptide 3); oxygen binding member of CYP96A similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT1G57750.1); similar to CYP96A9 (cytochrome P450, family 96, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39480.1); similar to CYP96A4 (cytochrome P450, family 96, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G52320.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Os01g0183600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042228.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93891.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.130241091609644 -1.30295813510939 0.219487645603226 1 0.184408977407199 2.79524756844518 -0.130241091609644 0.0965315725716503
AT4G35760_at 9.23962011684885 9.61587476723542 9.29639061932346 9.26781858890827 9.63622450204032 9.13174801122869 10.4080854347670 9.96563573422445 9.20665846716194 8.97422482076422 9.26059127875853 9.15374341531009 9.19541488954938 8.99819046719003 9.07570208954522 9.56546995382223 9.34815441563757 9.21716708921094 8.97117164640204 0.180607949749287 0.175073618508331 0.189953055889187 0.193255752624708 0.177641042482174 0.186352835713443 0.176744774643318 0.183358494218170 0.204839016534459 0.186363852701308 0.180915673823879 0.181213332231821 0.194458720951800 0.189728220773138 0.190228978622235 0.177573423552188 0.196923874887589 0.182617638145993 0.200346603149598 4 4|0 -|/ 16942765 16943710 16943313.3 16942326 16944682 - gene protein_coding_gene FALSE TRUE AT4G35760.1 electron carrier/ protein disulfide oxidoreductase similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55978.1); similar to Os03g0131500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048864.1); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Vitamin K epoxide reductase; (InterPro:IPR012932); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.149069680562570 -1.30289708343955 0.219507765909920 1 0.184340063997135 18.7089193108158 -0.149069680562570 0.133223117077343
AT3G58510_at 7.73530111757832 7.08104925922321 7.61788738012801 7.29653933209061 6.93321096333566 7.65418234934975 6.68271973803025 7.44603124309881 6.77818026929212 6.68109044602688 7.00466606586957 6.94285852377208 7.12765595668484 7.01236887858087 6.79727385053926 7.27973581928355 7.63050739609527 6.6062994305141 6.88390905662638 0.154667936462942 0.154024741802573 0.153703166126571 0.152588780975587 0.152523857683922 0.159484988968439 0.156386647965792 0.154667900291176 0.156038471147050 0.156186366139020 0.163105369264358 0.154165405023182 0.162745579613881 0.1560700782814 0.158859952929821 0.155482920501634 0.151128473509238 0.151666151003911 0.151017774653745 3 3 + 21653947 21654412 21654184.545 21650955 21654772 + gene protein_coding_gene FALSE TRUE AT3G58510.1|AT3G58510.2|AT3G58510.3 DEAD box RNA helicase, putative (RH11)|ATP-dependent helicase Identical to DEAD-box ATP-dependent RNA helicase 11 (EC 3.6.1.-) (RH11) [Arabidopsis Thaliana] (GB:Q8LA13;GB:Q8W4P3;GB:Q9M2G5;GB:Q9ZS09); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G58570.1); similar to Os07g0202100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059135.1); similar to Os03g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051626.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE89166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.204145241464503 1.30284635017857 0.219524486811870 1 0.184282799455808 14.2214805049289 0.204145241464503 0.221195696823703
AT1G10800_at 2.53793939578698 2.26163977462758 2.73332823007796 2.49770073803397 2.52407816135451 2.92004176615469 2.51103067275552 2.9540241031864 3.23414487485496 2.75579545139008 2.7493751230169 2.57484659554142 3.2755521027883 3.37918910273419 2.97292222714996 3.12214965687854 3.06392401024578 2.91046378927369 2.48325861797575 0.210170513808344 0.212825055245076 0.219538250029111 0.214598186134666 0.208493918990538 0.213246332673212 0.208493918990538 0.220488966973229 0.208493918990538 0.219971562708346 0.215510019708638 0.208493918990538 0.215841861649466 0.211617030151316 0.217750611391152 0.216058645402234 0.212161670679541 0.223844215570562 0.212824369735700 1 1 - 3598167 3598490 3598358.636 3598159 3598592 - gene protein_coding_gene FALSE TRUE AT1G10800.1 similar to hypothetical protein MtrDRAFT_AC146632g32v2 [Medicago truncatula] (GB:ABE85810.1) 0.142140957598081 1.30276689795022 0.219550675141133 1 0.184193121906200 5.5326990922608 0.142140957598081 0.120505227032604
AT1G28490_at 7.0895561723174 7.15158153058802 7.0223949020652 6.59614336888047 7.4875881733086 6.48521405182635 7.38158377188301 7.08886305253824 6.57702809758874 7.10206901361557 7.14787610322469 7.29119073336183 6.65036670805883 6.8633800409915 6.46360828457184 7.23446306633529 6.40383797776887 6.45364013771285 7.04359361147178 0.220143629051304 0.213877758545715 0.233003952448932 0.226937266889234 0.215475254155287 0.23120128066876 0.225858484774424 0.220881501521864 0.238187524914363 0.213877758545715 0.217839811067889 0.227024505769487 0.228385665690613 0.22564975204235 0.233482369338612 0.213877758545715 0.242444334999904 0.224400128064154 0.224935130926556 1 1|0 +|/ 10016867 10017803 10017299.667 10015905 10018033 + gene protein_coding_gene FALSE TRUE AT1G28490.1|AT1G28490.2 SYP61 (SYNTAXIN OF PLANTS 61) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. Identical to Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1) (SYP61) [Arabidopsis Thaliana] (GB:Q946Y7;GB:Q8VYF3;GB:Q9SGP7); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to SNARE domain, putative [Medicago truncatula] (GB:ABE91641.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012)|Identical to Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1) (SYP61) [Arabidopsis Thaliana] (GB:Q946Y7;GB:Q8VYF3;GB:Q9SGP7); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to SNARE domain, putative [Medicago truncatula] (GB:ABE91641.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) -0.187039600266832 -1.30274045612232 0.219559391226619 1 0.184163277933616 13.8984201057902 -0.187039600266832 0.195481066298382
AT4G23280_at 3.02920904230876 2.74810127998391 2.77743813605519 2.70166815258015 2.38805920439616 2.19027833448104 1.30806379124900 1.61354227818462 1.91712645635011 1.67646028381374 1.41956762117756 1.88297771386439 1.09612512929794 1.76370192296844 1.30974231347293 1.39208914598811 1.78868489345239 1.72836483934330 1.32854438569095 0.251358263602284 0.257105467504565 0.24101159060628 0.245952879406069 0.235730566297778 0.240656720399259 0.238740371002928 0.238088494471029 0.242868536039456 0.253723207819400 0.235730566297778 0.235730566297778 0.241085874834836 0.239919984258456 0.24127381585201 0.236765227987035 0.2508489390128 0.239558482280676 0.235730566297778 4 4 + 12177024 12177426 12177299.222 12174750 12177481 + gene protein_coding_gene FALSE TRUE AT4G23280.1 protein kinase, putative similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23270.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.123289090553629 1.30267910358595 0.219579616108205 1 0.184094033108724 3.93872856377014 0.123289090553629 0.0806510938649501
AT2G01950_at 2.49957204030435 2.72139622396761 2.30293787361218 2.367164025215 1.79581915551106 2.01313002457511 2.81475307762173 2.77790300716676 2.87232209551239 3.49001400770124 4.05518760108818 4.26233015519362 2.95472079543098 3.54887898039719 4.26595299194563 3.54430923263660 2.56462518439445 3.60311978410521 3.37172387880658 0.233958148688875 0.230293538114922 0.237260478199967 0.250646525008623 0.238350961120986 0.243210191696706 0.233326913383778 0.231889137469087 0.241413774695497 0.233901980843852 0.231008051209282 0.235968405694288 0.235474208317631 0.232369671011947 0.235769782556965 0.230293538114922 0.237385674509561 0.238403819472348 0.231574333047738 2 2 - 440884 441367 441174.455 440635 444275 - gene protein_coding_gene FALSE TRUE AT2G01950.1 BRL2 (BRI1-LIKE 2); ATP binding / protein serine/threonine kinase Similar to BRI, brassinosteroid receptor protein. Identical to Serine/threonine-protein kinase BRI1-like 2 precursor (EC 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 2) (Protein VASCULAR HIGHWAY 1) (BRL1) [Arabidopsis Thaliana] (GB:Q9ZPS9); similar to BRL3 (BRI1-LIKE 3), protein binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G13380.1); similar to BRL1 (BRI 1 LIKE), kinase [Arabidopsis thaliana] (TAIR:AT1G55610.1); similar to BRI1 (BRASSINOSTEROID INSENSITIVE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G39400.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36390.1); similar to brassinosteroid receptor [Pisum sativum] (GB:BAC99050.1); similar to hypothetical protein [Solanum lycopersicum] (GB:CAC36401.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.114219693780599 -1.30266401952590 0.219584588806870 1 0.184077009013727 5.83387305415792 -0.114219693780599 0.0552456268986036
AT1G80100_at 1.80624486395872 1.80863195502159 1.68333886447199 1.82423522845464 1.3393341101367 1.51199355605531 1.67978988750465 1.79679812436429 2.02862430525586 2.15257675234636 2.3441051095856 2.03523777172812 1.85060084640367 2.08513529139939 1.88265569510022 2.18278519421414 2.25777321470180 2.12854881501978 2.22286187436638 0.239231009213057 0.234461765311675 0.246797193306603 0.247687956427181 0.248319370834627 0.235698522645066 0.252538924741872 0.241606172161373 0.239236719251715 0.236079080100389 0.240125819161469 0.238714091046723 0.24841624895893 0.249315823172171 0.245307969457901 0.235364259028654 0.248306277657977 0.242105353269563 0.234019801452331 1 1|0 +|/ 30138721 30139133 30138891.111 30138711 30139545 + gene protein_coding_gene FALSE TRUE AT1G80100.1 AHP6 (ARABIDOPSIS HISTIDINE PHOSPHOTRANSFER PROTEIN 6); transferase, transferring phosphorus-containing groups AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. similar to AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT3G21510.1); similar to putative histidine-containing phosphotransfer protein 3 [Populus x canadensis] (GB:CAH56501.1); contains InterPro domain Hpt; (InterPro:IPR008207) -0.110986584826549 -1.30224782092076 0.219721831661757 1 0.183607336110327 3.79656726687529 -0.110986584826549 0.0435601983033058
AT1G22420_at 0.518389883546138 0.532598901465236 0.537412126343276 0.807888821978948 0.563135634948550 0.577724718055239 0.692310766233776 0.793780091553167 0.473085205619499 0.19057550449762 0.59101045706608 0.228453689323791 0.96721142153404 0.309725574251136 0.839155160107236 0.585743960370308 0.403268069995367 0.695227811905134 0.354441568426828 0.189800222468974 0.181777889666689 0.194737950126404 0.175356192891144 0.177139714800027 0.192993443391072 0.177696066562493 0.184346039844692 0.180182647828114 0.181536689576784 0.177323716271368 0.184752166806366 0.181505328366042 0.183032356985266 0.183550119907952 0.182186305403383 0.178833273467065 0.179415839652603 0.175356192891144 1 1 - 7916081 7916638 7916416 7916065 7917507 - gene protein_coding_gene FALSE TRUE AT1G22420.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22485.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1) 0.112688753259873 1.30213704634389 0.219758371784271 1 0.183482346826619 1.08632609014077 0.112688753259873 0.0501167036615944
AT1G72175_at 5.43949652533670 5.65325487910566 5.28341616206077 4.93198163067619 5.33916742445656 5.48085596959811 5.31940702145364 5.05142276365201 5.40210904000984 5.07869501625423 5.18225839880764 4.8697201301736 4.83055588078984 5.34200359733376 5.0369228267916 4.79695537042304 5.15634187245688 5.2993120470303 5.14991245975633 0.202129747568393 0.200896021104623 0.208092112543239 0.202038594275433 0.199900295152210 0.204786473465359 0.194573374349199 0.20348164305297 0.207882849689182 0.194573374349199 0.194573374349199 0.195006866265237 0.197645964554918 0.202764979112232 0.200506067969153 0.200277496584316 0.19826238472152 0.198640952162987 0.194660840780818 1 1|0 +|/ 27161646 27162912 27162231.667 27161537 27163220 + gene protein_coding_gene FALSE TRUE AT1G72175.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22510.1); similar to hypothetical protein LOC406612 [Danio rerio] (GB:NP_999915.1); similar to Os03g0839000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051839.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.126510036943364 -1.30205169280289 0.219786529915707 1 0.183386045767188 10.4496240991171 -0.126510036943364 0.0884256956780037
AT1G57906_at 1.99718951407794 1.72201179278310 2.39947418691045 2.06441186364256 1.92355222324453 1.92694819872176 1.85975094387250 1.98645558818581 1.95514733615074 2.46680245557506 2.26250293370603 2.04604406364105 2.28442572918988 2.09328815345025 2.03274549768973 2.36818308091407 2.40545604998136 2.08836243571645 1.99962036551087 0.173461183178459 0.175176277571261 0.170613291327096 0.174027642396009 0.166541292776071 0.166702891193018 0.168445478404871 0.167417396869647 0.174031798929329 0.168525476175690 0.168755881332970 0.172291420359143 0.172092534965410 0.169274768741606 0.172061564607841 0.172928390064449 0.173041776674848 0.180224594194312 0.176027789579903 1 1 + 21439515 21440448 21440162.455 21439092 21440475 + gene protein_coding_gene FALSE TRUE AT1G57906.1 ATP-dependent helicase similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G17690.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE79308.1); contains InterPro domain ATP-dependent DNA helicase RecQ; (InterPro:IPR004589) 0.122173632845268 1.30144664049638 0.219986221430818 1 0.182703517099853 4.15404897832066 0.122173632845268 0.0781730533977919
AT2G17972_at 7.67926248201494 8.30296172652204 7.5238330212881 7.71296089462707 8.06130509821028 7.67971190886724 8.5146633649745 8.69123949397035 8.37824593177244 8.66219044206855 8.85325544023434 9.3427012626075 8.51553619372274 8.75342325108008 9.24214963494658 8.7496594195829 8.13658667709586 8.64720497949194 8.53876345247208 0.194215864902879 0.191778393159479 0.206027498714611 0.198123756599549 0.183657316361233 0.194087269073407 0.198872380127431 0.188815775335306 0.210575833950107 0.195473459907878 0.1919764576485 0.200859096449133 0.199091545137170 0.190144920045879 0.202019479497842 0.185020784590662 0.197390238254023 0.195466600154561 0.194179594814139 2 2 + 7828718 7829145 7828963.545 7828667 7829412 + gene protein_coding_gene FALSE TRUE AT2G17972.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81091.1); similar to Os06g0715200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058582.1) -0.149457185440701 -1.3014114575318 0.219997837791347 1 0.182663835903263 16.6739745235341 -0.149457185440701 0.134222004014696
AT3G18490_at 11.7851612881327 12.1168812387831 12.5308055487598 12.6146744987139 12.3473885231583 12.4309451656811 12.4361269628014 12.7605216566003 11.9565659233013 12.2829617828452 12.0619371669081 12.1161340158622 12.6414768098734 12.0231501948221 11.5304488025005 12.5258944551287 12.4476838766146 12.1076149787580 12.1802256755753 0.0881730121749479 0.0822995644602902 0.0866873680114035 0.0896397009376934 0.0832928319425788 0.0898965926108204 0.0850923459146758 0.083101262874894 0.0893546427379199 0.0827054216556108 0.0846057772744916 0.0842045697414617 0.0822995644602902 0.0924746472071048 0.0840182978183537 0.0840685055337926 0.0871717557110365 0.083533740934249 0.0833500407519157 3 3 - 6349207 6349602 6349381.818 6348761 6350674 - gene protein_coding_gene FALSE TRUE AT3G18490.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAT38006.1); similar to Os01g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041979.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.124077695575048 1.30137928999593 0.220008458987474 1 0.182627556330619 24.5386682760617 0.124077695575048 0.0828651357480395
AT3G21310_at 1.23243277584342 1.48927894899154 1.15894402642843 1.7686206296306 1.13179124034941 1.50452154043402 1.01176594158501 1.28769391336686 2.12805241026682 1.84694688169586 1.4475520493978 1.42622263929005 0.996776539278413 1.20001599363311 1.79351280083421 1.77926396372347 1.86595328974368 1.58561314244944 1.88308821208094 0.193028442451852 0.187648319642966 0.190792930394433 0.194645737421502 0.187793508637672 0.189239537761748 0.190120358824011 0.189136968226433 0.187648319642966 0.191867476431805 0.192358376440211 0.187648319642966 0.189378090670925 0.187648319642966 0.187648319642966 0.189149026733473 0.19834620755342 0.192032491531571 0.199690098319997 3 3 + 7498427 7498975 7498674.545 7497296 7499158 + gene protein_coding_gene FALSE TRUE AT3G21310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51770.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77886.1); contains InterPro domain Protein of unknown function DUF266, plant; (InterPro:IPR004949) -0.152577784061763 -1.30108429404593 0.220105881435899 1 0.182294880117075 3.05541094556615 -0.152577784061763 0.139814850158188
AT1G52100_at 2.50851606601084 2.38159129345579 2.73552228468059 2.61485380735982 2.35248223043808 2.59935451306996 2.26861989009737 2.74183403119501 1.97867240662481 2.80512926647087 2.33426762307811 2.70506108748119 2.47920739985998 2.63229274051447 2.39050333081185 2.42603714180876 2.40589434182653 2.44651731122663 2.16766271799255 0.203576220391301 0.206560167193265 0.203669819112756 0.198780800035692 0.218164125765019 0.202514715056562 0.207879194314594 0.208459891786767 0.21566408707998 0.204936272941221 0.203626877935762 0.207767356266174 0.20370687857016 0.19854023805409 0.207756656892516 0.205319753715271 0.199821548314668 0.206830489113976 0.201288269857209 1 1 - 19386966 19387676 19387338.7 19386791 19389202 - gene protein_coding_gene FALSE TRUE AT1G52100.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT5G35950.1); similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT5G35940.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 0.130365356871945 1.30105370923248 0.220115984095990 1 0.182260391717653 4.92266047409111 0.130365356871945 0.0972111875687968
AT4G04990_at 1.80062559050069 1.66068547629407 2.08248521772114 2.21159894511096 1.93182046128211 1.62069175332816 1.95169205070083 1.65572503630648 2.12739931721847 1.51479677691757 1.73104698968464 1.80708887892674 2.09905036038593 1.95650758124116 1.82322782771479 1.62717074975763 2.3278836967779 2.11596499082734 2.00880798382103 0.207544201383416 0.204865369741678 0.205320050484885 0.208261662847397 0.206833930730241 0.206129741959288 0.203572419001648 0.206096109135369 0.202263299352120 0.207157378253668 0.202263299352120 0.208432054196806 0.212188673074061 0.204973507651309 0.205600230481851 0.203090842933419 0.221825304485623 0.202263299352120 0.204763220370012 4 4 + 2555447 2557007 2556545.909 2555088 2557044 + gene protein_coding_gene FALSE TRUE AT4G04990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61260.1); similar to fiber expressed protein [Gossypium hirsutum] (GB:AAY85179.1); contains InterPro domain Protein of unknown function DUF761, plant; (InterPro:IPR008480) 0.123395832169452 1.30104817038012 0.220117813709415 1 0.182254145994615 3.77424589660566 0.123395832169452 0.0812898631682641
AT3G09530_at 1.43348921034074 1.01562515562625 1.36933995048288 1.52247243204078 1.19637187545045 1.58483534469781 1.43211246117981 1.15417199845633 1.59099325054534 0.931931606920239 1.19772890671387 1.19639815335852 1.16373881975421 1.06815794990051 1.48243415889907 1.15219486710655 1.85604652311048 1.49198720536237 1.10542872503684 0.217246172677137 0.220066815015592 0.226455843634228 0.224740474574682 0.228019829258326 0.219568352087314 0.217246172677137 0.217246172677137 0.233480150933345 0.222508771622134 0.223689338131471 0.217246172677137 0.231577766541625 0.221909243070168 0.223019639924921 0.220394566854428 0.223476006836145 0.234366574351739 0.226261644552097 3 3 + 2927651 2928168 2927865.455 2926308 2928221 + gene protein_coding_gene FALSE TRUE AT3G09530.1 ATEXO70H3 (exocyst subunit EXO70 family protein H3); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70H4 (exocyst subunit EXO70 family protein H4), protein binding [Arabidopsis thaliana] (TAIR:AT3G09520.1); similar to Exo70 exocyst complex subunit [Medicago truncatula] (GB:ABE84275.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.138019911562709 1.30078184864971 0.220205800753022 1 0.181953858402892 2.60632081213097 0.138019911562709 0.112978945404678
AT1G33560_at 7.78900767809099 7.8417407840772 8.13319341575465 8.1313575055042 7.86628723394198 7.5743212142168 6.93394216468244 7.16354919755455 6.17632101103685 6.58230641334278 6.06417969953962 5.47359342612027 5.8794861050886 6.2180067996285 5.51774432930446 5.31593866457298 5.34028333298274 5.75463116260126 6.51338840119554 0.242538992722943 0.250880537300155 0.256613126379194 0.256874423050195 0.251392229590940 0.253496146816800 0.245570558637989 0.242393383113116 0.264242114876954 0.242393383113116 0.242393383113116 0.247928764749886 0.247339148485194 0.246449370497578 0.254892733778362 0.246298269365715 0.273047873734251 0.248516699988178 0.242393383113116 1 1 + 12171275 12171830 12171528 12168748 12171985 + gene protein_coding_gene FALSE TRUE AT1G33560.1 ADR1 (ACTIVATED DISEASE RESISTANCE 1) Encodes a NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens. Identical to Disease resistance protein ADR1 (Activated disease resistance protein 1) (ADR1) [Arabidopsis Thaliana] (GB:Q9FW44); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G04720.1); similar to ADR1-L1 (ADR1-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT4G33300.2); similar to ADR1-L3 (ADR1-LIKE 3), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G47280.1); similar to Probable disease resistance protein At4g33300 (GB:Q9SZA7); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.117146224479404 -1.30037280709704 0.220340995498278 1 0.181492733772252 13.7389190068136 -0.117146224479404 0.0649238038651872
AT4G30760_at 8.88108801598144 8.78697549129008 8.76068386187786 8.61315085562903 9.42608545519715 9.17556423213452 8.91441680258306 8.75602541512219 8.88829322543438 8.49748347252092 8.84064035869755 8.96861455659127 8.85042176072754 8.70852258256313 8.89267763283985 8.75852333828177 8.80333230959612 8.61117595052004 8.81250603202187 0.113986579203271 0.107498734230339 0.115539871374028 0.113473543792417 0.117013140250765 0.117110552866425 0.114701432067345 0.114365236897894 0.123629301215652 0.112984526002983 0.108481513895831 0.106976475329028 0.110821212023630 0.113226726129634 0.115645965548072 0.115172082896657 0.112810137642401 0.119938827470643 0.111765900820691 4 4 + 14982576 14983267 14982994.909 14982528 14983427 + gene protein_coding_gene FALSE TRUE AT4G30760.1|AT4G30760.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62050.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96170.1); similar to Os03g0370200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050197.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.115361160600111 1.30035562376228 0.220346676351622 1 0.181473364740685 17.6827485018367 0.115361160600111 0.0595649703432816
AT4G23410_at 2.43343400973692 2.42387667518478 2.39200748606959 2.38940756610717 2.64773327103831 2.48643332993307 2.00139898208227 2.22409591089769 1.98630735635116 2.44060464704115 1.82881244028761 2.50944091942474 2.42442797879526 2.19197772987744 2.16401549611259 2.56743701962699 2.13581159195620 2.37054152279234 2.34878951615401 0.190716397232391 0.196125470125955 0.202959216724266 0.188819324987991 0.200772803839582 0.199412541386913 0.197186477435825 0.186161640261566 0.197647963132378 0.189831817349418 0.187533634256645 0.189198297740624 0.191229836254932 0.205298318924193 0.189797097614404 0.191643493129514 0.200056275553373 0.186386313812325 0.189009368458697 4 4|0 +|/ 12224268 12225030 12224644.7 12223963 12225235 + gene protein_coding_gene FALSE TRUE AT4G23410.1 TET5 (TETRASPANIN5) Member of TETRASPANIN family similar to TET6 (TETRASPANIN6) [Arabidopsis thaliana] (TAIR:AT3G12090.1); similar to putative senescence-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90676.1); similar to Os05g0126100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054524.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.111842466494331 1.3001780730871 0.220405382071646 1 0.181273240482405 4.64111103415185 0.111842466494331 0.0476166740402902
AT2G17870_at 8.15629497726934 8.28077631574038 8.36409413628414 8.01363587800113 8.4745438530692 7.95995158922605 7.988876748767 8.14556846300873 8.39710122752431 8.11369852122927 8.53937322009895 8.31091751426438 8.51797381810367 8.56105208923245 8.62104555973995 8.52479570437097 8.20312616411997 8.4553217059403 8.24155574708298 0.124011013366886 0.126800799265440 0.128747516491914 0.132651826227409 0.122763208800568 0.140627920562600 0.125862756778487 0.126210710532512 0.128555618325895 0.128543497098251 0.126462619398792 0.123407678021355 0.121793960579076 0.126874818280828 0.123261589287200 0.121793960579076 0.132856931446903 0.129867130345344 0.130300257146198 2 2 - 7771358 7771877 7771630.273 7771057 7772312 - gene protein_coding_gene FALSE TRUE AT2G17870.1 cold-shock DNA-binding family protein similar to CSDP1 (COLD SHOCK DOMAIN PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G36020.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); similar to Os02g0121100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.138046397326873 1.30010411629604 0.220429839075883 1 0.181189886626701 16.5317106888021 0.138046397326873 0.113172204539809
AT1G10340_at 9.04099998236247 9.470778627902 9.4114829478080 9.35984634657899 8.16082395543404 8.16552400437014 3.51790308786652 3.74083824864633 7.21302421089168 4.78047572546074 3.16748456408138 2.95360670991826 3.38548213666447 3.51629875786055 3.07887124639805 3.7017468398512 3.40979707353866 3.97377642357808 4.45002037197943 0.366459492368065 0.371653563877227 0.369823399866247 0.372073264944125 0.368852072659443 0.367055288921923 0.36440710822047 0.364513010010021 0.372607615322232 0.36440710822047 0.36440710822047 0.369006514750401 0.367164673420534 0.366812049757250 0.369227735495525 0.36440710822047 0.366338922682867 0.366080457504598 0.36440710822047 1 1 - 3390504 3390856 3390693.545 3390324 3392573 - gene protein_coding_gene FALSE TRUE AT1G10340.1|AT1G10340.2 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G24600.3); similar to Ankyrin [Medicago truncatula] (GB:ABE80931.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.124499429864588 1.29966868570571 0.220573878057708 1 0.180699197703127 12.0483028526695 0.124499429864588 0.0842650408477241
AT1G21690_at 5.53305989216198 5.6698481175802 5.18797389520903 5.68671233884106 5.67973836931301 5.52193560788571 5.53204043278399 5.63028647874247 4.0153180743896 4.80238602473588 4.41511659639457 4.79662921839469 5.18610545495166 4.7826035440144 4.77145025634049 5.15016557000103 5.1154573929432 4.47691178624694 4.70063018620196 0.214532808786648 0.212422633227525 0.218747822948090 0.217085778783458 0.212984555864152 0.217053124530980 0.220954622645378 0.212196611577055 0.223676455733894 0.211383218320328 0.212670617283668 0.207842364578977 0.212143270066221 0.210197989295254 0.206823787045600 0.210578888216535 0.225463869955069 0.221530098349601 0.208794201132533 1 1|0 +|/ 7616990 7618306 7617637.875 7615611 7618594 + gene protein_coding_gene FALSE TRUE AT1G21690.1|AT1G21690.2 EMB1968 (EMBRYO DEFECTIVE 1968); ATPase similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to Os12g0176500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066296.1); similar to replication factor C 37 kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB16441.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959)|similar to replication factor C 36 kDA, putative [Arabidopsis thaliana] (TAIR:AT1G77470.1); similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to Os12g0176500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066296.1); similar to replication factor C 37 kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB16441.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.129237435731719 1.29948209460881 0.220635625354623 1 0.180488962926274 10.2266575944914 0.129237435731719 0.0951021666166063
AT3G01750_at 3.47699340748776 3.43158333628987 2.88018256656619 2.84514120053695 3.1016617296792 3.25282435247161 2.35910566518935 2.61738881160974 2.61578637145414 2.46335487240637 2.78170028782531 3.12142175081680 2.82277038696322 2.99098808696168 2.83378682901479 2.90751437553923 2.44288306973248 3.50123713189445 3.16362463048558 0.229281470690588 0.225049342921008 0.213645090406510 0.214487080806189 0.215576090948891 0.219990820611231 0.223368396893581 0.222445147086775 0.219976219265879 0.217935765369629 0.213645090406510 0.213645090406510 0.216498761080096 0.221949581250466 0.214848877460673 0.213645090406510 0.220542265636041 0.213645090406510 0.217109721959865 3 3 + 272166 272632 272352.455 270236 272983 + gene protein_coding_gene FALSE TRUE AT3G01750.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G04140.1); similar to Os05g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055122.1); similar to hypothetical protein [Cicer arietinum] (GB:CAD56218.1); similar to Os02g0601700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047352.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.113191886115386 1.29940096088194 0.220662478790817 1 0.180397555107690 5.83204831604159 0.113191886115386 0.0527320857902492
AT1G03210_at 9.25829615109093 9.23900514988719 8.7766546580633 8.90273435346782 8.76222636555175 7.7967678488808 7.1712370566536 6.333267499577 7.80885851980669 6.47866180769856 7.0451225869987 7.32660221691485 6.03898747912605 7.60021331515657 6.67932649087734 6.5852829336799 6.36532984703412 7.07823706686224 6.68356423310212 0.214562580519316 0.215245012053612 0.223298006442155 0.215000303558479 0.215496047986033 0.239370399860203 0.217912004952533 0.223953342253359 0.232484582098251 0.219939707851691 0.217250125022360 0.214678196990729 0.214658750995593 0.220761345976507 0.218364313164910 0.215980627831736 0.232784283032676 0.226196540429452 0.218754768275753 1 1|0 +|/ 783396 783957 783693 782948 784240 + gene protein_coding_gene FALSE TRUE AT1G03210.1 phenazine biosynthesis PhzC/PhzF family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT4G02860.1); similar to Phenazine biosynthesis PhzC/PhzF protein [Medicago truncatula] (GB:ABE77454.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) 0.204335282033751 1.29917005347125 0.220738918589492 1 0.180137429678064 15.1951482665384 0.204335282033751 0.222331224733201
AT3G53480_at 0.0304514944130925 0.634285677786263 0.473156177688278 0.611013667652658 0.352238351078326 0.640357144967517 0.61928704061458 0.131243935106637 0.8290113794948 0.894839207867893 0.399502384171687 0.0869322446995015 0.308429044702773 0.434447297023511 0.426604667961109 0.870376534919931 0.492075990063372 0.532843967035926 1.03688811217396 0.187958532343479 0.187193922230348 0.188031921837268 0.196282064149891 0.191547675928783 0.185383454139007 0.197193716384959 0.187955902707643 0.199207169356012 0.203606648661061 0.192208187118623 0.185458120868938 0.191818461855684 0.187924161669831 0.196881579804044 0.190584285150272 0.194695010767073 0.197700852829361 0.188833486257046 3 3 + 19841973 19842584 19842257.182 19836285 19842775 + gene protein_coding_gene FALSE TRUE AT3G53480.1 ATPDR9/PDR9 (PLEIOTROPIC DRUG RESISTANCE 9); ATPase, coupled to transmembrane movement of substances Identical to Probable pleiotropic drug resistance protein 9 (PDR9) [Arabidopsis Thaliana] (GB:Q9LFH0); similar to ATPDR5/PDR5 (PLEIOTROPIC DRUG RESISTANCE 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G37280.1); similar to ATPDR13/PDR13 (PLEIOTROPIC DRUG RESISTANCE 13), ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G15215.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT4G15236.1); similar to Pleiotropic drug resistance protein 15 (GB:Q7FMW4); similar to Pleiotropic drug resistance protein 3 (NtPDR3) (GB:Q5W274); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59575.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.155485209245054 -1.29907338278306 0.220770926979542 1 0.180028536437839 1.11857806091398 -0.155485209245054 0.145285437344788
AT2G10950_at 8.2998294826323 8.53021858590765 8.33419953301193 8.19274277583163 8.72593615572696 8.21686076060606 8.22808619008432 8.33675481308675 8.07041472245059 8.16373413778596 8.00438523360075 7.62548733937822 8.190485259002 7.96992018440949 7.4892254833257 7.90001715025647 7.64585511994616 7.51102779645949 7.99110588135377 0.165795639071478 0.163758775824735 0.171339420616609 0.164145010118006 0.167064169991619 0.169855905482078 0.164284192217032 0.164229158365461 0.171921562000190 0.175279221675906 0.163157987040837 0.169405461087851 0.163418902382111 0.173024558313647 0.174673666318624 0.162146429267835 0.18241888688265 0.168429318540627 0.173688789417279 2 2 - 4322623 4323432 4323023.273 4322495 4324944 - gene protein_coding_gene FALSE TRUE AT2G10950.1 BSD domain-containing protein similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65910.1); similar to Os01g0766600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044357.1); similar to putative BSD protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53348.1); contains InterPro domain BSD; (InterPro:IPR005607) -0.132160964849879 -1.29883002538946 0.220851521262504 1 0.179754435613351 16.2916462169413 -0.132160964849879 0.101507407838915
AT3G52905_at 5.39226043195007 5.6133208352024 5.33277873679578 5.56928350320176 5.70869085077031 5.84502039233198 6.39353267103057 5.77060459904639 3.74590494626686 4.96885053556734 4.11057411899436 4.25568488991210 4.48819505399073 4.72049300930195 4.24062305033634 5.02807609065711 5.08589205057627 4.5724604178844 5.29839929546718 0.259415675004015 0.262185306376758 0.259415675004015 0.263747714074769 0.259415675004015 0.269181979269177 0.259415675004015 0.276593075395110 0.267349615544363 0.263642375791546 0.259415675004015 0.259415675004015 0.275215407908401 0.268046718674829 0.259415675004015 0.261936722086725 0.259780493172602 0.270658040119349 0.262483473621866 3 3|0 -|/ 19625275 19626381 19625949.143 19624986 19626723 - gene protein_coding_gene FALSE TRUE AT3G52905.1 DNA binding / hydrolase, acting on ester bonds / nuclease/ recombinase similar to hypothetical 19.6 kDa protein [Cicer arietinum] (GB:CAB88667.1); contains InterPro domain Resolvase, RNase H-like fold; (InterPro:IPR006641); contains InterPro domain Holliday junction resolvase YqgF; (InterPro:IPR005227); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.143394010379768 -1.29841668427126 0.220988465381941 1 0.179288960440347 10.3200872163614 -0.143394010379768 0.123758568007815
AT1G21090_at 0.5492039916129 0.900298114268851 0.352261628498910 0.7531086907252 0.725897662770806 0.27352642141413 0.882208496917074 0.762983604895531 1.38030429051747 1.31202683718703 1.11640153652121 1.64084689717771 1.25800035967752 1.10731075083693 1.77186048678926 1.12412569728106 0.493994100644389 1.79554688191253 1.28766982498079 0.194067218156241 0.198812891328533 0.209200375534179 0.195670107060578 0.191838319101372 0.199794074302183 0.192211713144509 0.193392011891717 0.216254019919433 0.204353229932794 0.199426978282363 0.195720929687705 0.200591202376399 0.199798571107472 0.197448202149485 0.199513031948025 0.217113696789447 0.191838319101372 0.193785964657996 1 1|0 +|/ 7385157 7386158 7385799.2 7384618 7386547 + gene protein_coding_gene FALSE TRUE AT1G21090.1 hydroxyproline-rich glycoprotein family protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20570.1); similar to Cupredoxin [Medicago truncatula] (GB:ABE83169.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.142815548222342 -1.29824379873803 0.221045764732413 1 0.179094300308823 1.95752498792968 -0.142815548222342 0.122710250046710
AT3G46650_at 2.66084498984899 2.30620317032750 2.88256528488870 2.54266386968241 2.34870220392579 2.72270622058549 2.5667289171595 2.36576561760211 3.07941090805330 2.55808248437381 3.11189615884893 2.97737896475626 2.6032478978677 2.42767111307360 2.83751513195873 2.97389291376817 3.03929765365929 2.98966333158948 2.5959183487147 0.191665253201284 0.183203048921112 0.183538038013306 0.190245659341634 0.183825825996073 0.193252254166056 0.187616414583273 0.183003743642320 0.193080266739813 0.188946957089603 0.183707432757684 0.184922725649025 0.193010645524588 0.183669066217417 0.182640363810149 0.195807929028220 0.191408804492323 0.189781683219188 0.185029818934778 3 3 - 17197399 17197838 17197607.182 17197346 17198797 - gene protein_coding_gene FALSE TRUE AT3G46650.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46680.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46690.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.137436768172869 1.29823813882013 0.221047640801236 1 0.179087927846130 5.356793022288 0.137436768172869 0.112361535289948
AT1G52470_at 1.24294209698444 1.11843506761784 1.17842836186789 1.53194706939428 0.597929231396637 1.13552045404790 0.473659929011632 0.921140367338973 1.10193666206126 0.96686857596273 1.44301743799899 1.19484824470098 1.32958534872466 1.00183606235152 1.58957752888069 1.19970104905157 1.20678847202770 1.14852471228796 1.33475802146342 0.198109204722391 0.202062126228653 0.198109204722391 0.201321933937898 0.202173148289448 0.203414041647168 0.208411619764632 0.201527684494719 0.202743687657494 0.202282011650766 0.210774095119518 0.198270894090234 0.203786478468018 0.199428173380099 0.198113450870105 0.198109204722391 0.203277778301585 0.200375082154931 0.207959674749054 1 1|0 +|/ 19558386 19559001 19558718.4 19557016 19559026 + gene protein_coding_gene FALSE TRUE AT1G52470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52460.1); similar to Phospholipase/Carboxylesterase [Medicago truncatula] (GB:ABE78991.1); contains InterPro domain Phospholipase/Carboxylesterase; (InterPro:IPR003140) 0.150812842222831 1.29804961096533 0.221110138772011 1 0.178875676894238 2.22437829395686 0.150812842222831 0.137327412863541
AT1G01930_at 6.29969243480158 6.26935968740046 6.3758978737761 6.41910461477853 6.54119353314757 6.34962307624555 6.16027184356036 6.31864510049426 6.35787740453532 6.33078684331891 5.75729015040893 5.88361218525504 5.81148988649927 6.15708769784097 6.20312104556255 6.29603573508807 5.47418185594348 6.02054625544107 6.30484737171507 0.195747284041203 0.198108332974720 0.191928297851544 0.195183460379998 0.192291094734620 0.203720018993724 0.189485809570001 0.201929144733591 0.202568147011752 0.192572832024274 0.195657108637999 0.192142302477535 0.195978377377353 0.192617425806534 0.199003597183339 0.191326122805262 0.217778670694742 0.202335857014114 0.188923425536828 1 1 - 320063 321080 320699.636 319836 322860 - gene protein_coding_gene FALSE TRUE AT1G01930.1 zinc finger protein-related similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG09306.1); similar to Os04g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053619.1); similar to OSJNBa0019K04.19 [Oryza sativa (japonica cultivar-group)] (GB:CAD41672.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.110643715214367 -1.29703744613133 0.221445924012149 1 0.177736522003538 12.4825190912062 -0.110643715214367 0.0439736724257810
AT4G03260_at 10.0010540213556 9.866642851403 10.1193996782988 9.96220531233431 10.1546594592900 9.66196357475074 10.315226898133 9.89106544507035 10.0277022713974 10.1917619158161 9.946431556393 9.8884113366771 9.90824216758305 10.0072704320374 9.46109038923942 10.1532543807927 10.0507354438276 9.94926155074076 10.2515188163168 0.0823305445530157 0.0803791199628933 0.0854768855829792 0.0803791199628933 0.0814564503372487 0.0871877683584319 0.083160680107126 0.0809677713249987 0.0847099518284145 0.0827235468776369 0.0830854908899996 0.081863271051673 0.0856990078244265 0.0803791199628933 0.0866618295159126 0.0830735818064028 0.0827150789638126 0.0822148326177768 0.0870272394033522 4 4 + 1430846 1431406 1431128.727 1428171 1431663 + gene protein_coding_gene FALSE TRUE AT4G03260.1 leucine-rich repeat family protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G78230.1); similar to Os07g0106100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058703.1); similar to Os05g0501600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055971.1); similar to leucine-rich protein [Porphyromonas (GB:NP_905954.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, SDS22; (InterPro:IPR007092) -0.140173737585362 -1.29645162600843 0.221640460148287 1 0.177077490927167 20.0353179009152 -0.140173737585362 0.118063188726141
AT3G53920_at 9.41004829745302 9.11372555376529 9.42414674003718 9.16204604072373 9.61367273059242 9.30996874543028 9.88645223760296 9.54620701160988 9.60390716430707 9.8554093232421 9.62227194522872 9.57169444809944 9.73281617724198 9.68663278868225 9.31985078175032 9.82479425739206 9.82890606292005 9.561491904175 9.9363563199526 0.0765698121694857 0.0777740632296661 0.0765503178989144 0.076403351375642 0.0769508197018549 0.0838402677913818 0.0770083594893315 0.0764597045774297 0.0842784868167682 0.0788317456264987 0.0758541048447355 0.0750869455114317 0.0780062167620254 0.0757115937451895 0.0763948637569588 0.0742913685247253 0.0777317653335498 0.077525379551467 0.0776610157926089 3 3|0 -|/ 19972032 19972840 19972361.9 19971847 19974927 - gene protein_coding_gene FALSE TRUE AT3G53920.1 SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription factor Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to sigma factor 3 [Sinapis alba] (GB:CAB83107.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.133325008863127 -1.29625186690941 0.221706827081423 1 0.176852815934448 19.1543408687453 -0.133325008863127 0.104480722383930
AT1G03400_at 10.0269827652067 10.0596428375210 10.3569898099286 10.2219274492209 10.2160299339185 9.7843006036919 10.0465941343837 9.5925891874263 10.4085876769764 9.49631022791464 10.0649531079258 9.78819452729715 9.71083565180543 10.0763600465834 9.58838424213191 9.84847118754687 9.89565403718322 10.2878553568159 9.63861511427555 0.100342821541914 0.0995396270181967 0.100137329255725 0.0979758200484713 0.0983366325759942 0.101097606542708 0.0997578672567189 0.0976083644612104 0.109058363784032 0.110616274176374 0.098391732800866 0.0983714540770836 0.101706661824638 0.101679429792974 0.104143687683723 0.096640258742268 0.106794135305430 0.0995306403609485 0.102726621370898 1 1 - 842911 843454 843124.909 842746 844189 - gene protein_coding_gene FALSE TRUE AT1G03400.1 2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC synthase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. similar to 2A6 [Arabidopsis thaliana] (TAIR:AT1G03410.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.136555282330593 1.29613334636099 0.221746211421094 1 0.176719523977243 19.9158451865206 0.136555282330593 0.111054616847611
AT1G64410_at 2.08888893017491 1.90005456354426 2.34333800752625 2.07741273558855 2.38434424816128 2.25555646495332 2.72407161451101 1.93887790026221 3.18526031441242 2.75641997507087 1.89145671950987 2.37871442419616 2.79767200309771 2.41322190538369 2.49329860663409 2.48496432727277 2.29047011356160 2.37442349190461 2.47932039673291 0.157860746511459 0.161432627591319 0.165245050523619 0.157979517631578 0.163883223817646 0.164865959993969 0.165381286699841 0.162629105876482 0.161958494675568 0.157860746511459 0.159223327793076 0.158878354365573 0.166262542053080 0.158281414046659 0.161983001434412 0.163754665717323 0.159726880003635 0.168251789711963 0.162193042704395 1 1 - 23931413 23931424 23931419.1 23930056 23935866 - gene protein_coding_gene FALSE TRUE AT1G64410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52960.1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT3G43350.1); similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT3G42100.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) -0.157141458929711 -1.29576217170294 0.22186958966799 1 0.176302145238397 4.81283202193212 -0.157141458929711 0.148815956124704
AT2G22250_at 4.4465487401075 5.35543885492338 4.64907532273089 4.81207860301848 5.23993153985886 3.78812207513542 5.43897417374687 5.76592358957723 5.59949932660863 5.70264454764764 5.82382833091404 6.10413174568805 5.92522584426066 5.86203260448829 5.29453434136127 5.42597476156643 5.24616792906807 5.58487273707307 5.34580074601451 0.231281892741252 0.228009145119207 0.243203139687046 0.237212359377908 0.23680005760998 0.263510040368434 0.228009145119207 0.229532842484328 0.242695467198036 0.228009145119207 0.230803208028828 0.237391894606866 0.233352314552257 0.235057638026086 0.228009145119207 0.238129860229686 0.247450830346651 0.242327043240868 0.235623534070784 2 2|0 -|/ 9465112 9466048 9465582.7 9464890 9467999 - gene protein_coding_gene FALSE TRUE AT2G22250.1|AT2G22250.2|AT2G22250.3 AAT/ATAAT/MEE17 (maternal effect embryo arrest 17); aspartate transaminase similar to aminotransferase class I and II family protein [Arabidopsis thaliana] (TAIR:AT1G77670.1); similar to aspartate aminotransferase [Pinus pinaster] (GB:CAF31327.1); similar to Os01g0871300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044936.1); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.260194145511972 -1.29556724700472 0.221934405011024 1 0.176082990193348 10.5408420675004 -0.260194145511972 0.30308279970218
AT1G80730_at 1.25180967872057 0.870523971042205 1.39810317629886 0.85450016263951 1.15881759404130 0.99417089274355 1.20258779749963 1.18191226945831 1.26000981541911 1.80076250679108 1.00269355557275 1.4731365543956 0.9975240754605 1.01199114470521 1.76856265140180 1.05980491772889 0.782295987046235 1.18514747613344 1.18531913293456 0.209719021965176 0.209689063310501 0.206948262752973 0.201731854493079 0.207381222981832 0.210907863917395 0.206667176616813 0.202666279920135 0.203542224712735 0.201731854493079 0.207902425229012 0.205432015145968 0.207521328960544 0.202521116746158 0.208053973822006 0.202129704017939 0.20282793156855 0.210832819438828 0.201731854493079 1 1 - 30344496 30344946 30344710.273 30344215 30345139 - gene protein_coding_gene FALSE TRUE AT1G80730.1 ZFP1 (ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein and is expressed at high levels in the shoot apex, including the apical meristem, developing leaves and the developing vascular system. expression induced three days post germination. T-DNA insertion mutant has a dominant phenotype in leaf initiation. Identical to Zinc finger protein 1 (ZFP1) [Arabidopsis Thaliana] (GB:Q42485); similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G10970.1); similar to zinc finger protein (GB:AAA87300.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.140264872912704 -1.29547772512656 0.221964177547712 1 0.175982348042477 2.40180737464906 -0.140264872912704 0.118440594419166
AT3G54230_at 6.42273133335314 6.52181670734112 6.9571569815835 6.56753957521799 7.29995829044383 6.97672274589264 6.65020430308708 5.93791795511846 6.04323058632246 6.89624445550852 6.01346532078831 6.35822572860774 6.39960007094151 6.2322958571515 6.32170958842532 6.61020867253246 6.48690950681654 6.42229932870193 6.87450515080309 0.197704449464833 0.193493356985159 0.191631302607659 0.198052652496755 0.191676592834154 0.200368249232749 0.191049538529088 0.198122749306736 0.209708985200059 0.198372255434539 0.200773357269525 0.195035837031422 0.191049538529088 0.194928498539724 0.209930419014020 0.191049538529088 0.197226975973552 0.206206036610317 0.201116914826652 3 3 + 20090375 20091049 20090648.636 20084082 20091242 + gene protein_coding_gene FALSE TRUE AT3G54230.1 nucleic acid binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G16940.1); similar to putative RNA-binding protein 10 [Oryza sativa (japonica cultivar-group)] (GB:BAD26240.1); similar to Os02g0167500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046007.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain D111/G-patch; (InterPro:IPR000467); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.159053009296922 1.29516451243768 0.222068369259829 1 0.175630267443028 13.1468806482332 0.159053009296922 0.152194930299608
AT4G11560_at 8.15359397831295 8.00852792492252 8.3473018845888 8.21138412376414 8.48354865813493 7.80327708296468 7.90485154102107 7.75052716248874 7.28841641941873 7.78437990991877 7.22276879869491 7.45770871192733 7.3376293896438 6.69608733989492 6.85975482589086 7.45820476926929 7.16612052461526 6.58104270845009 7.8542806118202 0.244998874797506 0.241679342103169 0.243935838426328 0.242285624637534 0.254906779872478 0.263477763979390 0.249764579399450 0.245833520646225 0.252232712145722 0.259398970556623 0.253711691963087 0.251057834755497 0.248539214937333 0.252052861947277 0.245608266588974 0.255673682602419 0.284322880645442 0.277680453396308 0.245302432700141 4 4|0 -|/ 7000096 7001394 7000554.25 6999890 7003487 - gene protein_coding_gene FALSE TRUE AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25120.1); similar to Bromo adjacent re (GB:ABE92119.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.143970780580387 -1.29508935509733 0.222093376661251 1 0.175545792506722 15.4527633514918 -0.143970780580387 0.125521693785091
AT2G27450_at 8.92732649875647 9.21928035588227 9.21899711905469 9.19720709128079 9.34509775474695 8.66845509347348 9.93991632839903 9.51943720657826 8.95541283026444 9.19171097885121 8.93146753583209 9.10635599573175 8.98073520505879 8.97075495129989 9.04071599250448 9.26291644707389 8.94246695733524 8.80599834131276 8.92174645559556 0.145853431578517 0.139290241065514 0.146827118545546 0.140310989036013 0.139290241065514 0.145880191738082 0.142453001080781 0.144122817909477 0.157339707765602 0.139290241065514 0.154407063972150 0.139290241065514 0.145569262938969 0.149678843397394 0.139290241065514 0.141727138649343 0.153738125868709 0.144628440181314 0.148039599050811 2 2|0 -|/ 11744774 11745843 11745230.2 11744510 11746768 - gene protein_coding_gene FALSE TRUE AT2G27450.1|AT2G27450.2 NLP1 (NITRILASE-LIKE PROTEIN 1); hydrolase, acting on carbon-nitrogen (but not peptide) bonds Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis. Identical to N-carbamoylputrescine amidase (EC 3.5.1.53) (Nitrilase-like protein 1) (CPA) [Arabidopsis Thaliana] (GB:Q8VYF5;GB:Q9ZQH4); similar to BETA-UP (BETA-UREIDOPROPIONASE), beta-ureidopropionase [Arabidopsis thaliana] (TAIR:AT5G64370.1); similar to N-carbamoylputrescine amidase (GB:Q3HVN1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010) -0.155915579700076 -1.29495912224392 0.222136715010421 1 0.17539942234686 18.2685312726077 -0.155915579700076 0.146878441394518
AT2G41200_at 3.4877918787687 3.89151669949275 3.69561029107847 3.94589997356968 4.17144700667468 4.18254704633902 3.92297697661909 4.06558875926919 4.07475344255783 3.75225845778581 4.0816757127832 4.06883676391652 3.95901749692568 3.79495978494957 4.02668523790046 4.22817436568828 4.4510486863205 3.73965777401194 4.02691269417403 0.232933454764556 0.236348489756250 0.240425649602587 0.242349897934933 0.238482635816008 0.245441861027471 0.236824683587941 0.238238337986698 0.243689266996448 0.237063889023715 0.234365097487432 0.232933454764556 0.233997925422177 0.232933454764556 0.237538937563901 0.232933454764556 0.237636913387506 0.237068616197686 0.23661471348929 2 0|2 /|+ 17178952 17179980 17179621.7 17178703 17180209 + gene protein_coding_gene FALSE TRUE AT2G41200.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28332.1); contains domain EF-hand (SSF47473) 0.124678140258749 1.29456259298417 0.222268712959589 1 0.174953823115231 7.91795491696873 0.124678140258749 0.0858497636348639
AT3G57980_at 2.84758835028776 2.75059979700339 2.9813300150622 2.97007612566504 3.03788066157251 2.96650723407074 2.96578736216667 3.26850252997397 2.48030161823696 2.24977026496646 2.89059179023129 2.05212013704227 1.84920905771440 2.62650177926624 2.6232678677642 2.61070449027340 3.00703372306206 2.63954721235197 2.29140395102799 0.174667201428169 0.168196556408942 0.172175027065180 0.178330537593520 0.171814894623599 0.170899759723724 0.175275588009933 0.170859583314347 0.172026411442360 0.171713830743424 0.17080682968673 0.169053906972426 0.174958163584949 0.173314297286274 0.169057821645258 0.173285450400478 0.170053983023066 0.179248846107133 0.170948781319601 3 3 - 21477912 21478426 21478175.636 21477896 21480125 - gene protein_coding_gene FALSE TRUE AT3G57980.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42150.1); similar to Os07g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060010.1); similar to Os08g0510700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062208.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10737.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.113854530852051 1.29447286451062 0.222298590962291 1 0.174853004323558 5.4124659854538 0.113854530852051 0.0564126534313176
AT1G53860_at 2.23741134013411 2.06457642671757 2.28625542300411 1.95472074873254 2.07167109728611 1.9902589496534 1.83674648722157 2.00308075506732 2.26265945289229 2.08414720943212 2.11963846185575 2.07109099567036 1.90915391951777 2.13985221214017 2.44181616583135 1.66045693154251 2.74359610094187 2.53595115116544 1.66714900250223 0.208455856862650 0.204944177354046 0.204472076983650 0.210755400831164 0.206109335075241 0.202471930236393 0.206472232671139 0.203425235048197 0.205864781771721 0.20665796193997 0.20919032188781 0.205003490780203 0.207842538883060 0.209461870564175 0.207364727078541 0.202301273652567 0.205798917392427 0.204787714060443 0.213475555737710 1 1 - 20110841 20112113 20111290.727 20110775 20113179 - gene protein_coding_gene FALSE TRUE AT1G53860.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT2G02170.2); similar to Remorin, C-terminal re (GB:ABE86453.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.119157703220752 1.29377263071596 0.222531869315857 1 0.174066393300806 4.15926334378144 0.119157703220752 0.0722038672064412
AT4G13420_at 1.21606897619302 1.03486405633696 1.14705716506170 1.21076834401789 0.839024983064126 0.936089431864728 1.12674642157807 1.29262637314737 1.22829499395799 1.35028894268736 1.41961971473227 0.77595790193506 1.23136405216534 1.3718283339178 1.15126863741465 0.998476831758994 1.12521151517274 1.44056121190934 1.25297119681251 0.206137794324144 0.205253527477210 0.211714313163751 0.217852410234687 0.204549148392316 0.212604360307547 0.209354488258307 0.209303584450798 0.208417275527456 0.20660292916376 0.205468725929579 0.212752190827918 0.212971723783558 0.204549148392316 0.2135748392541 0.209293150165458 0.210556051765261 0.204549148392316 0.207029242258896 4 4 - 7797066 7797598 7797381.455 7796846 7802247 - gene protein_coding_gene FALSE TRUE AT4G13420.1 HAK5 (High affinity K+ transporter 5); potassium ion transporter Encodes a protein of the KUP/HAK/KT potassium channel class that is upregulated in the roots by K levels. Identical to Potassium transporter 5 (AtPOT5) (AtHAK1) (AtHAK5) (POT5) [Arabidopsis Thaliana] (GB:Q9M7K4;GB:Q9T0L3); similar to KUP11 (K+ uptake permease 11), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT2G35060.1); similar to KUP10 (K+ transporter 10), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G31120.1); similar to potassium transporter family protein [Arabidopsis thaliana] (TAIR:AT1G60160.1); similar to high-affinity K+ transporter [Capsicum annuum] (GB:AAT58045.1); similar to K+ potassium transporter [Medicago truncatula] (GB:ABE79825.1); similar to putative high-affinity potassium transporter [Hordeum vulgare] (GB:AAC39315.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.111120247710961 -1.29359039132160 0.222592613997950 1 0.173861723442268 2.33364125358885 -0.111120247710961 0.0470224910964254
AT4G02900_at 1.90312070636849 1.86559023120212 1.70879868386021 1.46839845820577 2.14588367728523 1.84529720193838 2.62349425019879 2.26107414579327 2.20550440893714 2.10390933176668 2.44926016383572 2.78026378685031 1.89377772270068 2.57046659994739 2.21982784168295 2.63865754268839 2.43817303988647 2.01654950760655 2.46705986237842 0.20928509392826 0.20928509392826 0.226474986716178 0.215516049788154 0.214449995503071 0.219659070300477 0.221233967285544 0.214509527119389 0.2277090638416 0.220314544068877 0.214333533187411 0.221041750478292 0.211937644971978 0.215876868762816 0.20928509392826 0.215318230133560 0.215470940087907 0.216983037456973 0.215425546784797 4 4|0 +|/ 1286890 1287570 1287221 1284066 1287747 + gene protein_coding_gene FALSE TRUE AT4G02900.1 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G04340.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); similar to Os05g0393800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055457.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) -0.127088918389605 -1.29315685512624 0.222737176298895 1 0.173374909007974 4.29505544936181 -0.127088918389605 0.0917191948803283
AT3G10780_at 0.620799402965181 1.30388116556023 1.15454037500412 1.09945303487178 1.13155257959640 0.771221509470872 0.757588006694446 0.778214475048284 0.927539271729948 0.597122970247352 0.659841209602017 0.958329347757657 0.6726883430651 1.31515283359108 0.696445924888537 1.21806478012821 0.908018066479716 0.78599756377918 0.81295189095176 0.188080920510176 0.183931119416338 0.179667219166933 0.190571423565284 0.183024700498188 0.181998325323189 0.183958655325283 0.186360699721842 0.182306285547333 0.183955685276248 0.185670530236861 0.180173569719045 0.190230736980279 0.181987790742280 0.184707951766852 0.181097784482786 0.187533218222436 0.185271236467877 0.183523543720549 3 3|0 +|/ 3375288 3376265 3375780.5 3375166 3376339 + gene protein_coding_gene FALSE TRUE AT3G10780.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G09580.1); similar to Os06g0210100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057112.1); similar to Os02g0768200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048237.1); similar to emp24 protein [Hyacinthus orientalis] (GB:AAT08688.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.14834182992692 1.29259707128171 0.222923949275501 1 0.172746503833704 1.79266730347031 0.14834182992692 0.134036310265913
AT1G73080_at 4.47366892184327 4.47746331039346 4.12318641131178 3.83920415375819 4.21299450175174 4.16434383612063 4.78398563616087 4.12003635608703 4.22952006586897 4.71897826241192 4.85707896843081 5.01475585358571 4.35053352774043 4.54002121587706 4.86506982424897 4.52115611890328 3.88193102421743 4.22893852539431 4.3734990619559 0.188385870720826 0.197847105910904 0.187635994380913 0.188300306985175 0.188875275216762 0.186827014250980 0.191161276693751 0.185357172996691 0.215450304362374 0.196116999115950 0.185357172996691 0.194952694297755 0.185919731424224 0.185357172996691 0.197177839975891 0.188380928044297 0.195575502491626 0.190875158928772 0.189511896964688 1 1 + 27490961 27491658 27491269.182 27488174 27491862 + gene protein_coding_gene FALSE TRUE AT1G73080.1 PEPR1 (PEP1 RECEPTOR 1); ATP binding / kinase/ protein binding / protein serine/threonine kinase Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G17750.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63930.1); similar to Putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAL75739.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD09494.1); similar to Receptor-like protein kinase precursor (GB:P93194); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.143543247415710 -1.29253800242527 0.222943665178325 1 0.172680205292714 8.76091110545104 -0.143543247415710 0.125253309153684
AT3G15460_at 4.66455357367011 4.30518728381646 4.78731225710892 4.78982043372652 4.13038485240695 4.08522802495552 4.90404443073754 4.93578923958984 3.95848097821509 3.95652520567307 3.78795249601954 3.8803645095951 3.93449845743555 3.45222647425611 4.31526121896056 4.17327192030448 4.60803818540885 3.71297494640027 3.96608466307548 0.198809229836135 0.196103697117508 0.185944964013385 0.197685859220323 0.190861958274247 0.189002535432422 0.192554691996519 0.189266195340552 0.198914798223617 0.19190609250418 0.192762321966267 0.195870883613090 0.191505090267618 0.190770443224163 0.191891089572027 0.190006666812515 0.193459876378348 0.192734882518024 0.193519877277322 3 3|0 -|/ 5214318 5215341 5214857.4 5214091 5216268 - gene protein_coding_gene FALSE TRUE AT3G15460.1 brix domain-containing protein similar to brix domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52930.1); similar to hypothetical protein UM05180.1 [Ustilago maydis 521] (GB:XP_761327.1); similar to Os02g0591800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047289.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.115748664755499 -1.29237626309521 0.222997657550437 1 0.172498681046534 8.54700858285253 -0.115748664755499 0.0629208512334605
AT4G02840_at 7.04808677869718 7.6199466471335 7.26206411818164 7.2914591119385 8.03904026601763 7.55359306787498 7.42031279826374 7.53010549819573 7.2138368938715 7.44162308342044 7.89642874456555 7.97226720488666 7.50264005664039 7.51368259173572 7.47941286586281 7.3757813852672 7.08755133667113 7.18358669646226 7.36377498236118 0.180655901352087 0.178571679388962 0.182641538583422 0.184688819965505 0.178571679388962 0.186978680601641 0.183049498177694 0.188232647783354 0.198272000401147 0.190467257340173 0.179932587361438 0.183547016390207 0.182788172262429 0.182390262992336 0.179661103407166 0.185145295906536 0.197164534752111 0.197247706749176 0.186768523036930 4 4|0 +|/ 1264898 1266190 1265811.2 1264627 1266486 + gene protein_coding_gene FALSE TRUE AT4G02840.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative similar to small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative [Arabidopsis thaliana] (TAIR:AT3G07590.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE77444.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.14680004207054 1.29235407078843 0.223005066695156 1 0.172473775306495 14.8911579591941 0.14680004207054 0.131293779704204
AT1G23880_at 3.08330391710543 2.87474112364663 2.90061664957103 3.01620910792100 2.40138789871556 2.85685077270629 2.84379921781237 3.47895692152056 3.52513941404067 3.84284019648809 3.98391298534585 3.81217111694676 3.23200280315688 3.55407854437470 3.9079759121985 3.48299111417292 3.31708483716946 3.83442329221558 3.63903889740348 0.173736268212326 0.177504126530746 0.178224592980318 0.181138447495605 0.173736268212326 0.178993175665084 0.176093725906006 0.176308467136229 0.178364486657358 0.185275215174390 0.178550787803930 0.173736268212326 0.182517667204961 0.182415086858938 0.177192990915658 0.181893513916072 0.185373362965757 0.176517999454759 0.175784062491859 1 1 + 8438026 8438532 8438280.818 8435646 8438734 + gene protein_coding_gene FALSE TRUE AT1G23880.1 NHL repeat-containing protein similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70280.2); similar to Os06g0269300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057356.1); similar to NHL repeat [Medicago truncatula] (GB:ABE85368.1); similar to Os02g0730400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048013.1); contains InterPro domain NHL repeat; (InterPro:IPR001258) -0.152430140702972 -1.29209470652821 0.223091673208449 1 0.172182721385838 6.58677632362902 -0.152430140702972 0.141411371907004
AT1G72470_at 3.06384147026096 3.68264476733819 2.95878895681938 3.41773260684211 2.70927769154793 2.94558386324392 3.65364103933849 4.58716886106765 4.73790558972327 4.07148655460951 5.23530676127282 5.30553358882992 4.34137579336554 5.28596183152843 3.90429204249572 5.00556990900359 3.64401341334913 4.35073027906093 4.05880557115037 0.228944785548875 0.212722916729196 0.223727725423858 0.219036941063392 0.217747626457942 0.220336392333344 0.215330952991299 0.215515703896522 0.233346433524030 0.217490653246102 0.222789307602250 0.212722916729196 0.222036833520392 0.230536770540467 0.220748497433679 0.217585514825801 0.224971448014323 0.212763175388565 0.212722916729196 1 1 + 27288801 27289278 27289052.364 27287355 27289557 + gene protein_coding_gene FALSE TRUE AT1G72470.1 ATEXO70D1 (exocyst subunit EXO70 family protein D1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70D3 (exocyst subunit EXO70 family protein D3), protein binding [Arabidopsis thaliana] (TAIR:AT3G14090.1); similar to ATEXO70D2 (exocyst subunit EXO70 family protein D2), protein binding [Arabidopsis thaliana] (TAIR:AT1G54090.1); similar to putative leucine zipper protein [Oryza sativa (japonica cultivar-group)] (GB:BAB86177.1); similar to Os08g0455700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061962.1); similar to Os09g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063276.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) -0.197139770509558 -1.29124382620060 0.223375990832065 1 0.171228170840017 7.83908350248615 -0.197139770509558 0.213416579279597
AT4G38110_at 4.01060419314107 4.10630785039777 4.01985498206824 4.01613503563896 4.83383806822191 3.65177465853657 4.23026308307872 4.48778011530033 3.33686480483160 3.78848051672052 4.11528224471259 4.18334878501147 4.47409288525333 4.04763950984557 3.91448656043463 4.2748175782307 4.02807502699341 4.25338309612775 3.95496739581083 0.226557963870832 0.226557963870832 0.231564669899112 0.227926153377891 0.230704055027183 0.233372698872698 0.242206005070424 0.226557963870832 0.240585758869138 0.231334871352908 0.231176356102452 0.226557963870832 0.228271952641180 0.238008579524986 0.238126017891446 0.226557963870832 0.232679132132958 0.232089034318664 0.233111521572990 4 4|0 -|/ 17889154 17890590 17889920.667 17888521 17892120 - gene protein_coding_gene FALSE TRUE AT4G38110.1 binding similar to PREDICTED: hypothetical protein LOC217026 isoform 10 [Mus musculus] (GB:XP_908012.1); similar to Os08g0152900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061008.1); similar to 2700008B19Rik protein [Mus musculus] (GB:AAH03942.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.194807507004406 1.29071293596976 0.223553535188938 1 0.170632824507314 8.0969838899382 0.194807507004406 0.210014647776422
AT2G42000_at 1.66349365291547 1.53051715998651 1.94357753870809 1.54859668636696 1.60276554236459 1.6489348982717 2.03906142625715 1.73459651803164 1.88706474814893 1.62641681670887 1.96174215240734 1.85961839672221 1.66351404608505 1.93086670004038 1.93705063552387 1.74074583465696 2.04817411909643 2.21252803882316 1.32118452015697 0.183900629243995 0.180805536354471 0.174395486239362 0.176587308340015 0.1817014289242 0.175008782021586 0.183328319182036 0.179361633980875 0.175311269910507 0.182979596651627 0.175842428077158 0.176656630139908 0.178226846975901 0.175743591903556 0.188226349586953 0.180787825732618 0.183195770034669 0.176155107381856 0.192707610884766 2 2|0 -|/ 17536502 17536874 17536667.8 17536321 17536906 - gene protein_coding_gene FALSE TRUE AT2G42000.1 plant EC metallothionein-like family 15 protein Identical to EC protein homolog 1 [Arabidopsis Thaliana] (GB:P93746;GB:Q42258); similar to plant EC metallothionein-like family 15 protein [Arabidopsis thaliana] (TAIR:AT2G23240.1); similar to EC protein homolog 1 (GB:P93746); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347); contains InterPro domain Growth factor, cystine knot; (InterPro:IPR002400); contains InterPro domain Whey acidic protein, core region; (InterPro:IPR008197); contains InterPro domain Plant EC metallothionein-like protein, family 15; (InterPro:IPR000316) 0.125888052938990 1.29007099067489 0.223768373349753 1 0.169913172779045 3.47936060390827 0.125888052938990 0.0896755694484174
AT1G69760_at 6.63952901656067 7.24456438250917 6.15774906737911 6.62769511163507 7.20369151602945 7.13610917079586 6.95631671930632 7.69560913139828 5.69758804336007 6.52879963021282 6.22919831821233 6.04450471752495 6.03833797028559 6.31148764753124 5.57097728695555 6.97154363943747 6.45437528327006 5.40527497272105 6.16959327728176 0.232488439968934 0.227844975829982 0.241973161424249 0.229849924161335 0.232963747373558 0.234017389470429 0.227844975829982 0.234498298597579 0.255050129748843 0.234524769916499 0.239528843126933 0.232917575549498 0.235489763534500 0.236385899850729 0.239913844114638 0.22823852333784 0.232864320051796 0.23554427327410 0.242667288931782 1 1 - 26243801 26244156 26243976 26242923 26244371 - gene protein_coding_gene FALSE TRUE AT1G69760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26920.1); similar to hypothetical protein [Ricinus communis] (GB:CAH56540.1) -0.178237383388166 -1.28985292103523 0.22384139250158 1 0.169668764227894 13.0877610793403 -0.178237383388166 0.184612726748945
AT3G13590_at 1.50330168058654 1.91572652446544 1.37095261806333 1.22774894718013 1.09852722909374 1.40990753842168 1.50879246448481 1.89097671657543 1.95086461294576 1.71181185701972 2.04715134854868 2.21382893189837 1.72276801592449 2.01273405499817 1.91710902696932 2.17851791649137 1.4091159379076 1.42219400433771 1.47390185916860 0.210184438456463 0.207018271252731 0.215151763987395 0.209877776639471 0.213483793298653 0.214411039535282 0.214523151225236 0.211803031796606 0.218956250318602 0.219015455361822 0.20691681026399 0.220693305584846 0.218893552189340 0.218624728342042 0.218419832569701 0.21223562542294 0.216438519550282 0.217976076789593 0.212685231772516 3 3 - 4435392 4435850 4435632.727 4435323 4437341 - gene protein_coding_gene FALSE TRUE AT3G13590.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42280.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.137340317540949 -1.28971318231278 0.223888193300051 1 0.169512163051437 3.27955180536513 -0.137340317540949 0.113956731692445
AT1G06340_at 1.45702635364394 1.34039753272673 1.38354696735157 0.935692718893969 1.19088234215540 1.30619639782444 1.08769433332519 1.03586294381445 1.72328320067857 1.46603405748195 1.36605900525532 0.891672014861362 1.38144978575648 1.33672473631296 1.65408414933282 1.30283232971289 0.727897418894111 1.32267229279273 1.21413131083342 0.200890967695259 0.203741553427864 0.208655669587735 0.201657461857199 0.199237860424508 0.200368846048493 0.211805334693762 0.210057330566953 0.202359034756225 0.201086850024578 0.202250433563395 0.208114437470342 0.203470759998546 0.204145006882792 0.20756614942009 0.208197471386505 0.206568607724188 0.201641353743946 0.207756293547209 1 1 - 1933587 1933911 1933748.182 1933290 1934013 - gene protein_coding_gene FALSE TRUE AT1G06340.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G09320.1); similar to Agenet [Medicago truncatula] (GB:ABE82901.1); contains InterPro domain Agenet; (InterPro:IPR008395) -0.123028953685523 -1.28969743359310 0.223893468306445 1 0.169494514671589 2.5750325268567 -0.123028953685523 0.0830228796619996
AT1G19120_at 8.50971378569489 8.74413397924106 8.48209621044069 8.68989310404798 9.33263739042482 8.63306902163537 8.81234832439677 9.0345919603555 8.18057776699537 8.47027701974786 8.98658111496757 8.77113185232806 8.45615456240524 8.99821356319489 8.3923431991524 8.86033834180915 8.09663139761567 8.63604661432255 8.42420313740036 0.188222280926755 0.179116275304022 0.197580517478902 0.174357507488874 0.176392062161196 0.188023094875472 0.184008027282969 0.174357507488874 0.19861497203513 0.187189865525461 0.179728881547093 0.179419296502722 0.189383898214180 0.186778899596594 0.186033549082592 0.179166386885939 0.21088583059544 0.191497315211834 0.184859932252507 1 0|1 /|+ 6608492 6609128 6608701.667 6608106 6609360 + gene protein_coding_gene FALSE TRUE AT1G19120.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT3G14080.2); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE78228.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.150277179279205 1.28965822459046 0.223906601734819 1 0.169450576822996 17.2838268330825 0.150277179279205 0.138110254618332
AT1G54970_at 1.30075079705211 1.00243078619857 1.70351779862791 1.65910522679601 1.31252004974736 1.44532424911712 1.38389217307506 1.44571601187985 1.56656486053485 1.35140604357631 1.62243009308536 1.5882231945181 1.83024656338876 0.883300974671547 1.71628511307875 1.48745271836251 1.51394080307080 1.19600527567798 1.57853458129984 0.198014788537210 0.200449382637247 0.196589271065838 0.195725718537101 0.194766992120081 0.199131200425063 0.197159948429984 0.193362451065398 0.203857889677095 0.206357978193487 0.195285462343949 0.194957915133647 0.193714704390421 0.199692421327678 0.197461927088433 0.194599070144862 0.199482429164310 0.207304841602042 0.207302224677258 1 1 + 20509076 20509830 20509579.636 20508667 20510155 + gene protein_coding_gene FALSE TRUE AT1G54970.1 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. similar to PRP3 (PROLINE-RICH PROTEIN 3), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT3G62680.1); similar to TrPRP2 [Trifolium repens] (GB:BAA96106.1) 0.113909909599380 1.2894607234753 0.223972766176312 1 0.169229270343991 2.89594251345445 0.113909909599380 0.0580253211163698
AT1G79850_at 10.4530755295063 10.6438897202461 9.76350993623981 9.89921031192469 10.3407425526781 10.2010433756696 10.270331539949 10.8880854531515 11.2166331438073 11.2209434983644 11.49578771446 11.7679842658220 11.1721089274153 11.4058012399246 12.0161550979717 11.5116204369520 10.8531106295186 11.1588812309299 11.1249965435309 0.0806707775683638 0.0747990154009115 0.0856424170120557 0.0808213950898054 0.0779964171764183 0.0836063268545569 0.0759155617707713 0.0786014680305005 0.0800802149073086 0.0757211306093907 0.0750199205221392 0.07512164426099 0.0761715535101504 0.0773881652874191 0.0782197946938597 0.0757514116012453 0.07975317312656 0.0764853450308578 0.0767912116417098 1 1 - 30046391 30046764 30046569.091 30046136 30046845 - gene protein_coding_gene FALSE TRUE AT1G79850.1 RPS17 (ribosomal protein S17); structural constituent of ribosome nuclear-encoded 30S chloroplast ribosomal protein S17 Identical to 30S ribosomal protein S17, chloroplast precursor (CS17) (RPS17) [Arabidopsis Thaliana] (GB:P16180); similar to EMB1129 (EMBRYO DEFECTIVE 1129), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G49400.1); similar to ribosomal protein S17 (GB:AAA84030.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) -0.138781109472544 -1.28933859033874 0.224013689733806 1 0.169092428250581 21.6125888464749 -0.138781109472544 0.116854885232633
AT2G01810_at 1.48174453710235 1.85334104514697 1.90163180049492 1.75687642988655 1.25890414108377 2.00321631495086 1.65143772447767 2.02914496868748 1.52378009287844 2.21330783084873 1.52901262202204 1.48519773376645 1.13966498796558 1.31895422103894 1.37090997224737 1.47347091976418 1.16176133319169 1.80468926464639 1.40105823687380 0.215026886514771 0.214886379139848 0.215051672325417 0.211965200867002 0.211833525757597 0.219888558881846 0.217277737952918 0.218238693253171 0.222111094599544 0.21288535513791 0.212712067953021 0.213371525691270 0.211833525757597 0.211833525757597 0.211833525757597 0.216685955196337 0.230481299077151 0.225425153956512 0.216951244174378 2 2 + 349373 349924 349673.727 347536 350178 + gene protein_coding_gene FALSE TRUE AT2G01810.1 PHD finger family protein similar to MMD1 (MALE MEIOCYTE DEATH 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G66170.1); similar to putative collagen [Oryza sativa (japonica cultivar-group)] (GB:AAL58226.1); similar to Os03g0716200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051078.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.163008826143125 -1.28923719474393 0.224047669331660 1 0.168978828221456 3.30362362957748 -0.163008826143125 0.160082715850242
AT1G02250_at 1.21695961614966 1.22427044996847 1.04418693095375 1.23027675944515 0.787244579901156 1.12173144227072 0.821549928183957 0.98227161456141 1.29526798165997 0.969627043105276 0.72200935770062 0.935351538155795 0.934516331547013 0.663660474842843 0.872607595091038 0.994118435385957 1.18375401469073 0.87420317564462 1.09311855422284 0.212147383267383 0.214432338167399 0.212147383267383 0.220262798431409 0.216194217230058 0.217377488864299 0.219634167990047 0.223956443458549 0.224803715757783 0.221820234376607 0.216439995248521 0.219011618243591 0.224228206037839 0.219367466210749 0.212147383267383 0.213993960995100 0.220179731758919 0.219707454485456 0.226821878579509 1 1|0 -|/ 438238 438823 438502.2 437951 439559 - gene protein_coding_gene FALSE TRUE AT1G02250.1 ANAC005 (Arabidopsis NAC domain containing protein 5); transcription factor similar to ANAC004 (Arabidopsis NAC domain containing protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G02230.1); similar to nam-like protein 1 [Petunia x hybrida] (GB:AAM47025.1); similar to Os08g0157900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061034.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.118606609176776 -1.28920063309224 0.224059922870667 1 0.168937867406070 2.06199415270180 -0.118606609176776 0.071853287163895
AT1G72360_at 3.46991369581974 4.47882147182911 3.9507068890021 3.82333125303176 4.02830840577401 4.64479402157442 3.18808110622094 3.64507358058254 4.14995023117 3.24996440933267 3.49483833436495 3.35280595794442 3.45480085259781 3.93743493126092 2.73211282787933 3.5912223040108 4.06591762971111 3.41021233776353 3.15489639240886 0.245250795306865 0.243484804663805 0.237418974902135 0.245024275547396 0.242194884047365 0.241144128192152 0.235426936588234 0.240505691531095 0.244605666958829 0.239957269053888 0.238711692599233 0.235381609352327 0.237242146930078 0.235381609352327 0.241526079388937 0.236010431768209 0.242005196866366 0.235381609352327 0.239596561559729 1 1 + 27246033 27246383 27246219.455 27245474 27246489 + gene protein_coding_gene FALSE TRUE AT1G72360.1|AT1G72360.2 ethylene-responsive element-binding protein, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G47520.1); similar to ethylene response factor [Manihot esculenta] (GB:AAX84670.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471)|similar to RAP2.12 [Arabidopsis thaliana] (TAIR:AT1G53910.3); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.201480240685127 1.28894526746858 0.224145523227182 1 0.168651798830719 7.41522304860206 0.201480240685127 0.220467572648015
ATCG01080_at 10.4293646329873 11.2487727463565 11.0145231078551 11.4583602396915 10.317196512594 10.4955881955308 10.5123936932507 11.376070387581 11.9238107939728 11.7418423170949 11.2695938317841 11.9620645564475 11.4793174690688 11.5396136920693 11.0162421067756 11.7274147209439 11.0598411022085 12.1488423686002 11.9143215634859 0.101673956569835 0.102730669995623 0.101435797106526 0.105627539139394 0.104721383128451 0.108482504833080 0.104997344922647 0.100629572002765 0.105488120022234 0.100629572002765 0.101603027147939 0.102013092923119 0.101160932270042 0.102677131013611 0.103813986969215 0.100629572002765 0.110839758532463 0.100629572002765 0.100629572002765 C C - 118383 118881 118687.818 118377 118907 - gene protein_coding_gene FALSE TRUE ATCG01080.1 NADH dehydrogenase ND6 Identical to NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) (ndhG) [Arabidopsis Thaliana] (GB:Q95695); similar to NADH-plastoquinone oxidoreductase subunit 6 [Gossypium hirsutum] (GB:YP_538987.1); contains InterPro domain NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; (InterPro:IPR001457) -0.202429339161654 -1.28831091762153 0.224358277290492 1 0.16794135517366 22.5492125840668 -0.202429339161654 0.222035411075888
AT4G25720_at 7.94179397503145 7.90046934216836 7.75186883860949 7.93667609300825 7.89857110409642 7.5713677513628 7.1903696147212 7.16628947076793 7.56470976016072 7.0068876208717 7.53812443636083 7.24024872816223 7.129274166457 7.34130014953037 7.25461976200223 7.30683388265625 6.78860299536156 7.09049803377458 7.0842485769107 0.160691480298473 0.157318468534867 0.169479686446210 0.158439950245102 0.165470478218673 0.163632051631654 0.162415742033828 0.157553211379385 0.163746892557149 0.170884709931082 0.157461328494199 0.160721262281925 0.164131771746611 0.167212319264341 0.172087168199720 0.161495793614667 0.171959877494032 0.169474855031745 0.164994450440127 4 4|0 -|/ 13100003 13101609 13100918.6 13099821 13102587 - gene protein_coding_gene FALSE TRUE AT4G25720.1|AT4G25720.2|AT4G25720.3 glutamine cyclotransferase family protein|catalytic similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Glutamine cyclotransferase; (InterPro:IPR007788)|similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Glutamine cyclotransferase; (InterPro:IPR007788); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) 0.116231398035382 1.28781308726056 0.22452535960209 1 0.167383982029205 14.8845773180220 0.116231398035382 0.0655562802941324
AT2G17890_at 1.84463574371717 1.74856620558134 1.86218146862313 1.63668527328862 1.23318420040326 1.41793856350896 1.37020926226405 1.62122784524661 1.86486163177899 1.68244618846883 2.19829586918644 1.38212071001039 1.83913694007843 1.53065395543988 1.75618537382880 1.87241750370777 1.28612335066195 2.09599290215174 2.06572016709567 0.213651241733057 0.215672731002963 0.209590755586799 0.208602440806439 0.212389687627348 0.208158534338668 0.212098554581867 0.204076174774248 0.211660166499315 0.208583682446573 0.209908873593123 0.207483537681512 0.206810946251726 0.204076174774248 0.21270416796398 0.204076174774248 0.205858296908811 0.215566699470138 0.204076174774248 2 2|0 -|/ 7776969 7777875 7777425.111 7776967 7779709 - gene protein_coding_gene FALSE TRUE AT2G17890.1 CPK16 (calcium-dependent protein kinase 16); calcium- and calmodulin-dependent protein kinase member of Calcium Dependent Protein Kinase similar to CPK18 (calcium-dependent protein kinase 18), calcium- and calmodulin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT4G36070.1); similar to CPK28 (calcium-dependent protein kinase 28), calcium- and calmodulin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G66210.1); similar to calcium-dependent protein kinase [Nicotiana tabacum] (GB:AAX81331.1); similar to calcium-dependent protein kinase CPK4 [Nicotiana tabacum] (GB:AAL30819.1); similar to calcium-dependent protein kinase CDPK1444 [Medicago truncatula] (GB:AAX14494.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.117277945613809 -1.28752728209064 0.224621327683592 1 0.167064062721245 3.39989114770298 -0.117277945613809 0.068618387858956
AT1G79230_at 9.44017291651668 9.50091001096627 9.39503416155687 9.50071206043953 9.48280961842159 9.26874101310954 9.76821254328976 9.81445497702339 9.25028392287034 9.4330908165027 9.34398058348873 9.42786665020418 9.35701981944715 9.21009724356952 9.40517301699454 9.35326705309632 8.82643549615019 9.4192304368916 9.19588676126731 0.109848900684749 0.106809547284576 0.119338288081871 0.110204426566378 0.108068068181772 0.114423291756214 0.108344644469369 0.106134722555779 0.116937547020856 0.109173949320639 0.106808810293080 0.104650135602646 0.106484809036309 0.118990651852594 0.109080182134999 0.104650135602646 0.141624560996456 0.114983577285520 0.105168328664561 1 1|0 +|/ 29807271 29808519 29808003.143 29805586 29808832 + gene protein_coding_gene FALSE TRUE AT1G79230.1|AT1G79230.2|AT1G79230.3 ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); thiosulfate sulfurtransferase|ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification. similar to ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2), thiosulfate sulfurtransferase [Arabidopsis thaliana] (TAIR:AT1G16460.2); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307)|similar to ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2), thiosulfate sulfurtransferase [Arabidopsis thaliana] (TAIR:AT1G16460.3); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307) -0.109658388983488 -1.28718962499399 0.224734749808569 1 0.166686167673818 18.8143663898456 -0.109658388983488 0.0433744671329327
AT1G77050_at 2.2265130626963 2.04655541305082 2.32017103305124 2.59300332362911 1.86437861335434 1.6643501028674 2.04613419756424 2.18970539374672 1.15052113108688 1.30903359047237 1.52332624858093 1.45556469349881 1.41178635306101 1.64759231146080 1.67683765625316 1.71412779723291 2.23969442741991 1.69776647116897 1.79447457998459 0.208421562639445 0.207164561583384 0.207164561583384 0.207164561583384 0.207164561583384 0.215594022865986 0.209663433768802 0.216062719694533 0.212877364726793 0.209509290438688 0.207164561583384 0.207183304604872 0.217712760097029 0.20764194363533 0.212532785585099 0.209894187427728 0.220448288623953 0.210002127307978 0.210763111684133 1 1 - 28954808 28955268 28955017.091 28954789 28956420 - gene protein_coding_gene FALSE TRUE AT1G77050.1 DEAD/DEAH box helicase, putative Identical to Putative DEAD-box ATP-dependent RNA helicase 29 (EC 3.6.1.-) (RH29) [Arabidopsis Thaliana] (GB:O49289); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to putative ATP-dependent RNA-helicase [Oryza sativa (japonica cultivar-group)] (GB:BAC98579.1); similar to putative ATP-dependent RNA helicase [Oryza sativa (indica cultivar-group)] (GB:AAU01909.1); similar to Os08g0416100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061808.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.118037989557144 1.28716994086521 0.224741363329702 1 0.166664140007654 3.66327477350294 0.118037989557144 0.0708143211010123
AT4G22960_at 1.49035671288959 1.81013089653904 1.58463384915670 1.56679089364175 1.03742394614862 1.75827941833685 1.12537672500324 1.71230690589439 2.16665872722727 2.12323894840959 1.65646028845127 1.60877682943832 2.28087126263653 1.93396289785109 1.87701448206334 1.68080808333262 1.89135475071288 2.06321949102801 2.2019715662786 0.217759546212933 0.220061079969182 0.211951076643067 0.22405861012263 0.220209893930368 0.213887326080860 0.214903078895043 0.215071628251683 0.215037330412712 0.222187981286307 0.217868816443265 0.211951076643067 0.214778453204542 0.213766588278898 0.214079134360250 0.215684500150609 0.217299505303097 0.213242648194699 0.217877672625755 4 4|0 +|/ 12031399 12032380 12032025 12030031 12033148 + gene protein_coding_gene FALSE TRUE AT4G22960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11860.1); similar to PREDICTED: similar to Y55F3AM.9 [Macaca mulatta] (GB:XP_001106845.1); similar to Os06g0712400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058557.1); contains InterPro domain Protein of unknown function DUF544; (InterPro:IPR007518) -0.168829343271576 -1.28699209070010 0.224801125056752 1 0.166465126401351 3.52966988078181 -0.168829343271576 0.170148340679892
AT1G66660_at 4.91392259426616 5.29783840387629 5.09034310048584 5.15575051469300 6.02962511285817 5.59898065537807 5.5272324655675 5.08307744329573 4.74684178228978 4.57126669345946 4.12299423956381 4.38958962993854 4.55469035340099 3.99351100292819 4.15315745516144 4.47399952326873 4.10699924858048 4.20973518415436 5.08466459524178 0.269952150862921 0.261729152081321 0.254871152091249 0.253368961615085 0.260166209881842 0.26020532313324 0.258394130928685 0.258308627284684 0.253368961615085 0.2581039733883 0.253368961615085 0.260669580158215 0.253368961615085 0.263852030351623 0.254394878169709 0.255639929613328 0.253368961615085 0.253368961615085 0.253368961615085 1 1 - 24865790 24866273 24866089.818 24865539 24867031 - gene protein_coding_gene FALSE TRUE AT1G66660.1|AT1G66660.2 seven in absentia (SINA) protein, putative|protein binding / zinc ion binding similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66650.1); similar to SIAH2 protein [Brassica napus var. napus] (GB:CAB89184.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) -0.143591329135047 -1.28693005121857 0.224821974792679 1 0.166395709094602 9.86285075461338 -0.143591329135047 0.126507316463303
AT1G07745_at 3.00277837786105 2.26641009180558 3.17321042349274 2.4042332099357 3.11885595974821 2.79667289371651 2.72780183903682 2.0391442618453 2.51988151434054 2.99897836720226 2.68425328873801 2.80482500647672 2.54093408732368 2.73452716973309 2.89198311617686 2.67489946643842 2.72337162726357 2.75280039931728 2.52104204310099 0.214142271613549 0.206798708927885 0.213328644832639 0.205281233813395 0.210487193262204 0.227962096513075 0.203072694551518 0.201378550056349 0.213018681624432 0.205404669932224 0.225129319049472 0.209296159544389 0.208791837559831 0.205324634409122 0.214540709905588 0.20753469565532 0.208123054996362 0.226321367908791 0.209922224628354 1 1|0 -|/ 2401353 2402424 2402041.333 2400586 2402870 - gene protein_coding_gene FALSE TRUE AT1G07745.1|AT1G07745.2 ATRAD51D/RAD51D (Arabidopsis homolog of RAD51 D); DNA binding|ATRAD51D/RAD51D (Arabidopsis homolog of RAD51 D) Identical to DNA repair protein RAD51 homolog 4 (AtRAD51D) (RAD51D) [Arabidopsis Thaliana] (GB:Q9LQQ2;GB:Q5K4Q1); similar to ATRAD51B/RAD51B [Arabidopsis thaliana] (TAIR:AT2G28560.2); similar to Trad-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34152.1); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553) 0.205095720527479 1.28664493585337 0.224917814384595 1 0.166076718119486 5.39409667137926 0.205095720527479 0.22640520134275
AT4G31070_at 1.58369378020373 1.43911110511443 1.33618403047774 1.43476455149052 1.00169353688603 1.44633842017795 1.33686751628728 1.07531429209218 1.16970872228978 1.35843998171581 1.50540613140486 1.32969057080653 1.52642189537193 1.48117882628756 1.37665885979844 1.32323047027311 1.66938237024120 1.62786949818958 0.984284706077567 0.178602313501763 0.179347006188547 0.182154975780033 0.188310258249462 0.178749420188084 0.184812826968012 0.180629935022059 0.178602313501763 0.189827630402519 0.186138085708758 0.185268252014258 0.182889374109877 0.18830664784949 0.195393292819129 0.189622090674190 0.181073974766388 0.188228843737041 0.183843820755873 0.184532300336365 4 4 - 15118870 15119272 15119071.545 15118702 15120543 - gene protein_coding_gene FALSE TRUE AT4G31070.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2758 (EMBRYO DEFECTIVE 2758), binding [Arabidopsis thaliana] (TAIR:AT4G33990.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE84706.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.127583576217960 1.28662705852783 0.224923824836294 1 0.166056718404354 2.65714138633675 0.127583576217960 0.0942697598844796
AT3G11960_at 6.51526970268345 6.60290626025628 6.25636784145999 6.51810991667244 7.24812430580662 6.7635127872703 6.25637098349107 6.06482631092469 6.1347627511967 6.10270654374236 6.20494262633993 6.15965447129454 5.79698559631572 6.39198008413813 6.03341717581146 6.71526170215277 6.07259403334527 5.84303802080797 6.44228451562523 0.220092499078424 0.211323465080175 0.216160738726171 0.210408587419984 0.210818158694685 0.211218215944066 0.207189527360967 0.220193921125504 0.217506041592936 0.210256723801945 0.212638843025437 0.206993022647087 0.208083795306752 0.21518099828677 0.216072429369484 0.212036327133583 0.231144534075324 0.217012299643358 0.210274773291995 3 3|0 +|/ 3791918 3793142 3792632.8 3786392 3793663 + gene protein_coding_gene FALSE TRUE AT3G11960.1|AT3G11960.2 cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to putative Splicing factor 3B subunit 3 [Oryza sativa (japonica cultivar-group)] (GB:BAC79787.1); similar to Os07g0203700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059140.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871)|similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to putative Splicing factor 3B subunit 3 [Oryza sativa (japonica cultivar-group)] (GB:BAC79787.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871) 0.131167504358878 1.28655818070527 0.224946983150554 1 0.165979665286902 12.7175954222192 0.131167504358878 0.102047499726094
AT2G20180_at 5.69537452294446 5.95000869839929 5.6679076583345 6.02883831616872 7.28577579239422 7.07800916373007 6.73718853658925 6.65964650930749 6.37779503843 6.89926016399769 6.13618464215766 5.96780518059254 6.20829584106018 5.86587997832043 6.21528096423451 6.64616168040175 6.63519218882491 6.1755973965357 6.92320452573428 0.220459587813814 0.216347297180354 0.219984733526519 0.213365762847658 0.225699060040029 0.235684395770321 0.219992466076830 0.226942317182135 0.213690314496382 0.215941250735727 0.213607075436967 0.21103630942616 0.218212032809360 0.223024601307559 0.221624218748755 0.21103630942616 0.233343279783443 0.218341810634851 0.217359458363434 2 2 - 8711824 8712366 8711963.091 8711105 8713973 - gene protein_coding_gene FALSE TRUE AT2G20180.1|AT2G20180.2 PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription factor Member of the basic helix-loop-helix (bHLH) family of transcription factors. PIF1 has transcriptional activation activity in the dark. Light reduces this activity in a phy-dependent manner. Negative regulator of seedling de-etiolation by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. PIF1 is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.| similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G28811.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97814.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.123771004762304 -1.28652683292203 0.224957523643106 1 0.165944597726008 12.8702034714351 -0.123771004762304 0.0855333492486857
AT3G02550_at 2.88127236639952 3.15279312658595 2.42042328538390 2.40783564980291 2.41690745119931 2.60854331816169 2.72534518122095 2.63249980246686 2.44346593329867 2.05969255362901 2.42552606228083 2.097672423966 2.48649496506107 2.33711721906697 2.45233053004409 2.05618516566817 2.33206777275861 2.51206504090367 2.04061038604565 0.199557086471413 0.218367587021936 0.202137400457612 0.203694503810085 0.208506067500456 0.201724821299655 0.205851899563613 0.199557086471413 0.19956170456434 0.201498126366506 0.204872449166727 0.209226807015043 0.202833717459091 0.203096719741885 0.206146493928548 0.203516470399099 0.206653615574241 0.204957951803764 0.199557086471413 3 3 - 536791 537257 537019.909 536512 538005 - gene protein_coding_gene FALSE TRUE AT3G02550.1 LOB domain protein 41 / lateral organ boundaries domain protein 41 (LBD41) Identical to LOB domain-containing protein 41 (LBD41) [Arabidopsis Thaliana] (GB:Q9M886); similar to LOB domain protein 40 / lateral organ boundaries domain protein 40 (LBD40) [Arabidopsis thaliana] (TAIR:AT1G67100.1); similar to seed specific protein Bn15D17A [Brassica napus] (GB:AAP37970.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.114187043276902 -1.28644209560751 0.224986018042162 1 0.165849808401559 4.91504686688253 -0.114187043276902 0.0597543850576165
AT3G19500_at 1.62376830006640 1.84529426137557 1.43360789184374 1.79088105381427 1.56412115204820 1.66688110956228 1.34034821417586 1.78584124853112 1.88162181530937 2.17530356404694 1.49107250643302 1.92740767420517 1.71153165627431 1.99248318939548 1.54152909457714 2.00696137188674 2.15896067750593 2.11034960637542 2.2433555735424 0.215318478232252 0.211101969240127 0.211219863454731 0.213685050312502 0.213729615997151 0.211101969240127 0.211101969240127 0.219102032574982 0.221713243388095 0.213706310769222 0.218329881747329 0.215925139603145 0.217104280244484 0.215518633313426 0.225214170308526 0.211101969240127 0.219660093647067 0.223874441395941 0.227881728374255 3 3|0 -|/ 6759318 6760657 6759939.333 6759022 6760945 - gene protein_coding_gene FALSE TRUE AT3G19500.1 ethylene-responsive protein -related similar to ethylene-responsive protein -related [Arabidopsis thaliana] (TAIR:AT1G49830.1); similar to Os03g0759700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051340.1); similar to bHLH transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53363.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.133748441552350 -1.28623472722564 0.225055761693372 1 0.165617859641509 3.61515821545113 -0.133748441552350 0.107480950804300
AT1G78800_at 6.13146126294992 6.25895669815597 5.7160506181242 5.73763469207531 6.57997925266353 5.30058560972383 6.18446043690897 5.78137286450168 5.5134550706319 5.1274863523905 5.62685590741914 5.22270147172132 5.43180869826344 5.7285430543811 5.0647755845809 5.23256520147794 4.98920992017305 5.05269118755094 5.73075778025184 0.212681543431110 0.212540903678655 0.214983776838376 0.214301927831159 0.214463020441539 0.222512597837796 0.225573870121330 0.214075262009879 0.219081106762482 0.210776644265668 0.208782570164592 0.211845070208825 0.213182346131397 0.215257571414626 0.222100967610897 0.214906958405248 0.225643726554973 0.213721375903229 0.208127165556643 1 0|1 /|- 29630832 29631437 29631113.778 29630552 29632862 - gene protein_coding_gene FALSE TRUE AT1G78800.1 glycosyl transferase family 1 protein similar to SUS5, UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TAIR:AT5G37180.1); similar to Os04g0589600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053699.1); similar to PREDICTED: similar to Alg2 protein [Strongylocentrotus purpuratus] (GB:XP_794663.2); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.209544731022258 -1.28578770224513 0.225206168386305 1 0.165117937476694 11.3367511523650 -0.209544731022258 0.233209934220859
AT1G14650_at 5.20269072352211 5.2715980263992 5.04945854226437 4.90183344174232 5.24428095234646 5.27683690960933 5.27506446733644 4.97363793359307 4.98578843736431 4.79735815691411 4.61769663681261 4.72893955530891 4.4568510816562 4.5694628627872 5.00380078584019 4.83872324011255 5.03950916051911 4.48567893815425 4.86602005055801 0.207243467401426 0.194091356942976 0.197762401617146 0.198070527188110 0.20386058368294 0.203339954563093 0.200218293136831 0.205212636114195 0.218317529431099 0.194091356942976 0.194091356942976 0.207331038344598 0.204246698514692 0.210204250447257 0.196794415623448 0.196551167031173 0.201617735138377 0.199048915535259 0.203140498632262 1 1 + 5029830 5030480 5030117.182 5027657 5030787 + gene protein_coding_gene FALSE TRUE AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein Identical to Probable splicing factor 3 subunit 1 [Arabidopsis Thaliana] (GB:Q8RXF1;GB:Q9MA20); similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G14640.1); similar to SWAP/Surp; Ubiquitin [Medicago truncatula] (GB:ABE94283.1); similar to Os02g0245000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046418.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.114059045926009 -1.28568949912426 0.225239220935513 1 0.165008130454732 9.9497442900655 -0.114059045926009 0.0595617932660831
AT1G68930_at 1.29168307362163 1.78432780660562 1.63800189301155 1.90110912698226 1.58439129577989 1.67295371146633 1.83086939117739 1.54692034279255 1.33228388058419 1.53953972188416 1.43179086097643 1.36035806258919 1.80624428801009 1.83921163741171 1.89925138831036 1.23844691294934 1.89258964140417 2.04199535024576 1.64333470107112 0.212978092435208 0.219209215336955 0.218260571216002 0.213928897801211 0.216928438272457 0.226509319364094 0.216487221629579 0.212822348314701 0.222051785972678 0.223338061152423 0.21329451161729 0.217496123993204 0.212019179510822 0.214782944489231 0.229277667354036 0.221374410713583 0.220391534268189 0.218680730262056 0.218072766858218 1 1 + 25923655 25924149 25923904.455 25921977 25924208 + gene protein_coding_gene FALSE TRUE AT1G68930.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to Os02g0106300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045627.1); similar to Os03g0775400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051430.1); similar to hypothetical protein [Oryza sativa] (GB:AAL31064.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.134673551575677 1.28557696680889 0.225277101173085 1 0.164882308436155 3.25317647297146 0.134673551575677 0.109503353855337
AT3G22710_at 1.08085275009105 1.24962263775640 1.17206534422405 1.50385687790583 0.943749444590524 1.52282741203162 1.16142976086479 1.21894841242533 1.42590959803425 1.79011186591222 1.44501029783822 0.91138215912235 1.67554516567092 1.24816266397252 1.39246754845215 1.47784778522486 1.33339012991941 0.699773381034499 1.76505872102533 0.190151253702045 0.191983019878909 0.195382238832901 0.186744291893284 0.1911536265835 0.197014941813601 0.193381238376786 0.194104264213931 0.194840529266851 0.190612318564888 0.189483808303623 0.182971702678333 0.200115118419521 0.198653522261648 0.182971702678333 0.183961241829333 0.204537089969301 0.200336550152043 0.194357308644454 3 3|0 -|/ 8026210 8026800 8026422.6 8026209 8027281 - gene protein_coding_gene FALSE TRUE AT3G22710.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22720.1); similar to Os09g0479100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063476.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.139750645424644 -1.28543406494101 0.225325211791382 1 0.164722541660454 2.69832280651702 -0.139750645424644 0.119546655829355
AT1G06620_at 1.22910382991918 1.20479818792998 1.49597696438327 1.47443498028747 1.01844545115796 1.12057298332836 1.26553844257351 0.264975350041849 1.11782405627761 0.95173938586936 1.25129958439400 1.11705973816638 1.17891120333483 1.20230451330394 1.37719951840348 1.0341554338275 0.948451769791235 1.37591012544403 1.32018821781357 0.203114450594041 0.206946179220939 0.225919501811824 0.20788190717334 0.212621622119458 0.208099887719495 0.203114450594041 0.204935699572598 0.208633869128278 0.208459559457900 0.205313870608944 0.209693287689232 0.204541539269233 0.208211989569129 0.209286823444294 0.203940639990054 0.210499919947158 0.211186636564651 0.211223328783274 1 0|1 /|+ 2026474 2027062 2026746.5 2025600 2027270 + gene protein_coding_gene FALSE TRUE AT1G06620.1 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G61400.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.170998954009731 1.28479673064496 0.225539884464262 1 0.164010145365617 2.29202012661271 0.170998954009731 0.17414247188278
AT2G24490_at 2.84717015654563 3.26279737146186 2.66997683998321 2.35816483541698 1.78886485200001 2.09966138956909 2.67853826893783 2.59190043441666 1.79143715516708 3.13605923453948 3.01908980942996 3.19009983643239 2.39276945504344 3.04555273291752 3.57474928242911 2.86677908942763 2.55746525407479 2.75620062720711 2.79741857126911 0.236824413618848 0.237974085820378 0.240855878973886 0.243292624669150 0.257469089299025 0.240563866177950 0.238005810735411 0.248514811654984 0.248705820808038 0.241573125713636 0.237538674329578 0.239401324918581 0.242840769448457 0.242460490645544 0.250372960400000 0.237098368821523 0.241628826285664 0.247389385065405 0.236544769371281 2 2|0 -|/ 10405736 10406682 10406260.143 10405484 10407568 - gene protein_coding_gene FALSE TRUE AT2G24490.1 ATRPA2/ROR1/RPA2 (REPLICON PROTEIN A); protein binding Encodes a component of Replication Protein A. Component of transcriptional gene silencing which does not affect endogenous small RNA accumulation nor DNA methylation. Localized in the nucleus. Involved in DNA repair. Interacts physically with ROS1. similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT3G02920.1); similar to RPA 32kDa [Pisum sativum] (GB:AAP58374.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.132783985693245 -1.28461318914154 0.225601737481943 1 0.163805034110548 5.28728922580581 -0.132783985693245 0.105842885062157
AT1G72070_at 2.06806486677443 2.20649611786301 1.94351831921946 2.15686007741417 2.20607809992567 2.13869257463343 1.62524072655031 1.49853517539972 2.31445351773471 1.63777263038038 1.2604406926761 1.48306271708673 1.15993850366770 1.2920020753652 1.38986733082675 1.40666324439263 1.88872851901332 1.82501888166946 1.89024779905707 0.206010490888673 0.208461582928967 0.195141639702219 0.194983324876266 0.209073713572103 0.193922037437957 0.198225355873575 0.197513010941471 0.196421350357599 0.199162876038964 0.196595579757793 0.199445820410765 0.196360256718945 0.197837554184887 0.205912077542766 0.195934242594334 0.213234582878907 0.203812373245683 0.203929711583147 1 1|0 -|/ 27122907 27123233 27123131.111 27122285 27123370 - gene protein_coding_gene FALSE TRUE AT1G72070.1 DNAJ heat shock N-terminal domain-containing protein similar to J8, heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G80920.1); similar to JA-domain [Ipomoea batatas] (GB:BAE97716.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.111286511992753 -1.28460841721340 0.225603345793964 1 0.163799701666009 3.68578902537817 -0.111286511992753 0.0505346354503089
AT2G17040_at 8.57857663857709 8.96609666500193 9.45470131903849 9.48230145334887 9.46697981570319 8.67258638353738 8.37276207270826 8.44845755505234 7.64386083773896 6.04679134118268 5.19154963979117 6.09271469549061 5.14831245510226 5.81631450062701 5.42018784734269 4.51339019207422 5.10526433326409 5.97677583194195 5.51799644561872 0.224845902896806 0.216244902172874 0.218913105212633 0.219440476771102 0.220435180505502 0.223894793208592 0.215086099021264 0.223207590136588 0.230344243974537 0.216113153603098 0.217540173061258 0.215086099021264 0.226309031711703 0.229186344104894 0.22255342626925 0.220173162591481 0.232380285387163 0.21983828586312 0.228848658902827 2 2 + 7414578 7415153 7414908.364 7414205 7415352 + gene protein_coding_gene FALSE TRUE AT2G17040.1 ANAC036 (Arabidopsis NAC domain containing protein 36); transcription factor similar to ANAC034/ANAC035 (Arabidopsis NAC domain containing protein 34, Arabidopsis NAC domain containing protein 35), transcription factor [Arabidopsis thaliana] (TAIR:AT2G02450.2); similar to NAC6 protein [Glycine max] (GB:AAX85983.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.158575088910228 -1.28459858487307 0.225606659677020 1 0.163788714451833 14.8357810187715 -0.158575088910228 0.153592645581075
AT4G21080_at 0.864462488875648 1.15353399436484 1.35969229724292 1.52232911216665 0.984870751467568 1.18372358935392 1.15738403633514 1.14943485445388 1.14403371646982 1.72388621076681 1.14120544863123 1.14905326916115 1.07979459769744 1.30345355308464 0.859146602936925 0.95677963589905 1.08092049224562 1.37277189325494 1.72860962582710 0.198712488676474 0.198562296350419 0.194686709866184 0.197873459749160 0.193453587335148 0.198083332928447 0.201729664090188 0.202246393933798 0.193453587335148 0.195996094597977 0.201737151261982 0.198682380102935 0.196326563512111 0.205828336280194 0.201860473470616 0.20324309765184 0.195543104027567 0.202428198258340 0.210724379320579 4 4 - 11254630 11255127 11254893.182 11254613 11255362 - gene protein_coding_gene FALSE TRUE AT4G21080.1 Dof-type zinc finger domain-containing protein Identical to Hypothetical Dof zinc finger protein DOF4.5 (AtDOF4.5) (DOF4.5) [Arabidopsis Thaliana] (GB:O49550); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21040.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE81562.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.116417868511825 -1.28458162134747 0.225612377141575 1 0.163769758588543 2.49696249268346 -0.116417868511825 0.0669385437797387
AT1G17000_at 0.87434452109363 1.01665073938660 1.17696591650410 1.62892665016613 0.519126638727582 0.53609684911063 0.845731564619943 1.29284526859881 1.05576646380560 1.01000069508618 0.616352537101403 0.752088251148096 1.44392317493228 1.01426645352326 0.386014064359382 0.853484675386304 1.01553175312985 1.00418460927428 1.28218937152090 0.207795725038407 0.202319530338766 0.210071219195542 0.20349420518745 0.210600251858990 0.202319530338766 0.202319530338766 0.207143421855204 0.211287648968147 0.202392984573628 0.209637142987541 0.202319530338766 0.206825940707154 0.205419263618908 0.206779372599011 0.206285987641138 0.208369437919779 0.206153527830658 0.205749940592548 1 1 + 5816240 5816586 5816463.636 5812721 5816655 + gene protein_coding_gene FALSE TRUE AT1G17000.1 ATTPS3 (Arabidopsis thaliana trehalose-phosphatase/synthase 3); alpha,alpha-trehalose-phosphate synthase (UDP-forming) Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. similar to ATTPS2 (Arabidopsis thaliana trehalose-phosphatase/synthase 2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G16980.1); similar to ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G78580.1); similar to ATTPS4 (Arabidopsis thaliana trehalose phosphatase/synthase 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G27550.1); similar to trehalose-6-phosphate synthase, putative [Musa balbisiana] (GB:ABF70084.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) -0.136184415039171 -1.28442315999492 0.225665791389177 1 0.163592694859261 1.98719411852314 -0.136184415039171 0.112780431660097
AT1G60440_at 7.7227821398118 8.12462975207201 8.49893382690941 8.44940684450894 8.74921351252209 8.40003613210876 8.14902379632905 8.00169288130595 7.75854444481107 7.74395220963132 7.77205182393458 7.44380683917828 7.36550796201233 7.7843011534136 6.95854702892346 7.82519448217568 7.39424939873683 7.46545694876296 7.80694976226927 0.168503564626133 0.165455764754402 0.172308418414663 0.173606186047386 0.165592106740034 0.178006844573792 0.169359518995871 0.163496913064808 0.180384376914309 0.166917195986562 0.163135458639819 0.165179568285519 0.172012630973129 0.164493678389802 0.179212690625439 0.165907674791924 0.173685168641465 0.171852367396241 0.165827626123599 1 0|1 /|- 22270363 22270947 22270559.333 22270171 22272908 - gene protein_coding_gene FALSE TRUE AT1G60440.1 ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4?-phosphopantothenate. Identical to Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid kinase 1) (AtCoaA) (COAA) [Arabidopsis Thaliana] (GB:O80765;GB:Q66GL8); similar to ATPANK2 (PANTOTHENATE KINASE 2), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT4G32180.2); similar to partially similar to pantothenate kinase family protein [Solanum lycopersicum] (GB:BAD95798.1); contains InterPro domain Fumble; (InterPro:IPR011602); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567) 0.128094709518797 1.28402452626122 0.225800208675396 1 0.163147333071876 15.8974423241357 0.128094709518797 0.0959736993358526
AT2G40790_at 1.51562528644548 1.88783964559977 1.72375959143088 1.66521884494542 1.50806486506854 1.56961531553228 1.46550046094348 1.56002628805211 1.15646971251550 1.42916202800749 1.81275620937206 1.73180545236359 1.35573205665476 0.890073019527181 1.64310921787108 0.964939998566426 1.50773941582559 1.21015478417525 0.91068514282274 0.238863609422047 0.240811008877519 0.234946222217721 0.234946222217721 0.237391464154002 0.234946222217721 0.236187699847246 0.234946222217721 0.244469051779947 0.234946222217721 0.234946222217721 0.234946222217721 0.236771670700359 0.234946222217721 0.234946222217721 0.234946222217721 0.249378537885253 0.243352721763972 0.234946222217721 2 2 - 17030193 17030784 17030488.889 17030041 17031346 - gene protein_coding_gene FALSE TRUE AT2G40790.1 thioredoxin family protein similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G56420.1); similar to thioredoxin-like protein [Phalaris coerulescens] (GB:AAD49233.1); similar to Os01g0168200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042127.1); similar to thioredoxin h-like protein [Zea mays] (GB:AAN63617.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.116758271081658 1.28397756375846 0.225816048491045 1 0.163094872109207 2.88944515245711 0.116758271081658 0.0680644338602611
AT3G25890_at 5.01366857458324 5.17793357770856 4.59074299902625 4.89025726553952 3.88822117513952 3.98962975218097 3.17706942280347 3.78846273838265 2.16046533987128 2.73558319068086 2.67460066795786 2.89687200045677 2.58037384412438 2.64486123771889 3.29716881699769 2.55706701378219 2.49484135504861 2.76651024400797 2.62565796277833 0.250334822392346 0.247141242501858 0.248387253755226 0.246409318445694 0.246455904575386 0.245131936305925 0.238078551531741 0.249757692902611 0.233005656482498 0.244403456214188 0.235625375427902 0.233005656482498 0.237086750242777 0.238671607313027 0.240085256014923 0.233519866697878 0.239157497798998 0.243376306680760 0.233005656482498 3 3 + 9477755 9478236 9477950.364 9476587 9478697 + gene protein_coding_gene FALSE TRUE AT3G25890.1|AT3G25890.2 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G68550.2); similar to Os09g0309700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062835.1); similar to AP2 domain-containing transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36231.1); similar to Os01g0131600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041926.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.141115309668528 1.28396978006726 0.225818673912084 1 0.163086177221067 6.93763438581483 0.141115309668528 0.122463202792696
AT3G49770_at 1.57460314071148 1.95037915707951 1.7672567445701 2.01831331218517 1.22210366945529 1.52266347264696 1.19353573628474 1.64308565957322 2.17846842696996 1.99336395883785 1.76537686611558 1.44547618483198 1.92171274158725 1.68077068441445 1.76500075245808 1.72661268720307 2.28720498088466 1.54097916709456 2.09963925502928 0.199858023167743 0.197925287550610 0.205612123332806 0.199204262591101 0.201943350659412 0.203626475780758 0.198573077524718 0.197925287550610 0.19932359352345 0.20367519529109 0.201868809200655 0.202726108899967 0.200801767641972 0.197925287550610 0.202184264375659 0.197925287550610 0.203187841793086 0.203583564971455 0.205688935365916 3 3|0 -|/ 18472126 18472741 18472423.556 18471875 18472861 - gene protein_coding_gene FALSE TRUE AT3G49770.1 unknown protein -0.140832706284925 -1.28380457748229 0.225874402230007 1 0.162901644104685 3.54005876407301 -0.140832706284925 0.121959756314999
AT1G71697_at 7.58070150573559 7.950709470434 7.59760470432844 7.82539252272839 7.9748806410745 7.57212064060035 7.24253358415257 7.33041371647496 6.81428320371143 6.71667126175996 7.17629646001076 7.32948127465083 6.45963495278814 6.66041215853068 6.5542991859658 7.11252685459273 6.68853964568148 6.45504758173466 6.74202059368797 0.229510146004661 0.232677316146603 0.222866772398969 0.225935986933597 0.222409513448876 0.233443716706601 0.221256590102195 0.236834101591356 0.242057498747350 0.233502654796345 0.223821996459034 0.223722066456465 0.230045438899558 0.231014353355626 0.224664608755934 0.221746962573108 0.227556902461682 0.231357487488918 0.220901581520709 1 1|0 +|/ 26975803 26976601 26976170.5 26974885 26977126 + gene protein_coding_gene FALSE TRUE AT1G71697.1 ATCK1 (CHOLINE KINASE) Encodes choline kinase. mRNA levels are increased in response to wounding. similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to GmCK2p (GB:AAC49375.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575) 0.131640734587455 1.28373994271636 0.225896208733503 1 0.162829450977408 14.4153886568399 0.131640734587455 0.103649735407182
AT1G51350_at 6.0167016810456 6.55393778940534 6.46581188696706 6.72455389663625 6.19388786373147 6.37514322220533 6.4668685268179 6.15008894456925 4.46471637122794 5.06636017642075 5.11938312254678 4.86266878723398 5.04843098792717 5.12353184652151 4.89299891205079 5.4835199315829 6.04607531771825 4.24822302477616 5.3652870705843 0.265074202321307 0.257135045870682 0.265387703266145 0.257135045870682 0.260404666282295 0.265368176604792 0.263476855831391 0.288788438409593 0.274437856238632 0.260707616302223 0.258088025803604 0.257135045870682 0.257135045870682 0.261409779385021 0.264028631627010 0.257135045870682 0.265725218585626 0.282012781194609 0.263059577869411 1 1|0 +|/ 19041551 19042373 19042036.5 19039423 19043009 + gene protein_coding_gene FALSE TRUE AT1G51350.1 armadillo/beta-catenin repeat family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G22125.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94931.2); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.140299716904602 1.28359007515791 0.225946777712935 1 0.162662067974599 11.4026534917751 0.140299716904602 0.120986483755465
AT1G20560_at 7.17311179399929 7.02829728073856 7.83882401784496 7.86971217861809 7.4568182022892 7.87380578250277 7.53250071753923 7.81595418075508 7.77730571035756 8.2454161458231 8.13527308605816 7.25690934647772 7.79219622281991 7.72162452921294 7.44353681719869 8.08959979248831 8.12265359509457 7.97241589933866 7.78983527797646 0.160086567851898 0.165328748090875 0.159830791881555 0.157281993400588 0.16477031024628 0.161232327927229 0.155799916389199 0.156298748779496 0.172276122365929 0.164123688116552 0.161003666664198 0.161274253822781 0.159655350343639 0.164811622261856 0.170862701555608 0.155799916389199 0.161537564999672 0.164620120534840 0.160394955353464 1 1 - 7119997 7120480 7120177.818 7119666 7121807 - gene protein_coding_gene FALSE TRUE AT1G20560.1|AT1G20560.2 AMP-dependent synthetase and ligase family protein similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT2G17650.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05508.1); similar to Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1] (GB:YP_421864.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT2G17650.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.125790584211400 1.28342622626047 0.226002074895191 1 0.162479085589636 15.4507756221885 0.125790584211400 0.0909401566087549
AT1G04440_at 8.61445904564421 8.7348720553571 9.25617879185154 8.82381261143847 9.1173209811475 8.93459171536412 8.60907001167662 8.3817611149171 8.6762575328347 8.903530451182 8.59496405933026 8.41779084316446 8.78429849729765 8.54674430027107 8.11943137632024 8.58138035426062 8.61512755131982 8.62242986930556 8.6106548353807 0.112263295394346 0.110529743335288 0.111681833681680 0.111432515985441 0.114355801723702 0.118845247683284 0.116236936145413 0.106691189450124 0.112861341783539 0.113149805495968 0.111971570619497 0.109327613886335 0.10851195312143 0.120197603188400 0.116024622768246 0.110616483782957 0.121698781803720 0.116631936272497 0.111744764821001 1 1 + 1204489 1205617 1205157.818 1202254 1205802 + gene protein_coding_gene FALSE TRUE AT1G04440.1 CKL13 (CASEIN KINASE LIKE 13); casein kinase I/ kinase similar to CKI1 (CASEIN KINASE I), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G14340.1); similar to CKL10 (Casein Kinase I-like 10), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT3G23340.1); similar to CKL8 (Casein Kinase I-like 8), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G43320.1); similar to Os02g0810400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048470.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.126529358997279 1.28337544709445 0.226019214538054 1 0.162422380068184 17.4417175223618 0.126529358997279 0.0926285698383975
AT1G65290_at 9.23416301584205 9.64675135271444 9.16504838694942 9.37281637764902 9.23972490101952 9.184898034876 9.71198208524427 9.8190976406396 9.30673799352305 9.22605416734135 9.46406212069795 9.70945560233632 9.18130343380318 9.37073138635803 9.63556017634775 9.2288322191174 9.16396988067703 9.34870070446275 9.27699271127854 0.0999598068308664 0.0921539116651725 0.101598503929938 0.09492123517795 0.0920280338701546 0.0941271588568778 0.0924944116486804 0.0958510249855646 0.107354419436281 0.0935511742188149 0.0920253148993855 0.0920253148993855 0.0929407063793353 0.0954173775168883 0.0972418465643344 0.0920253148993855 0.102304792920003 0.100980209860252 0.0969546167873108 1 1 - 24252751 24254002 24253513.273 24252492 24254080 - gene protein_coding_gene FALSE TRUE AT1G65290.1 acyl carrier family protein / ACP family protein similar to mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1), acyl carrier [Arabidopsis thaliana] (TAIR:AT2G44620.1); similar to Acyl carrier protein (ACP) [Medicago truncatula] (GB:ABE78017.1); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) -0.122238974362928 -1.2831895742375 0.226081961791712 1 0.162214827977411 18.7506878399615 -0.122238974362928 0.0826100688274625
AT1G29195_at 1.98815774056737 1.61519622735453 1.50221152260866 1.75197701564719 1.72558852886138 1.69430122311003 1.54360242743601 1.72375653541837 2.03714147733483 1.67028652394613 2.11635430091045 1.72037967927480 1.94987273578764 2.26236396897614 1.88468092835439 1.83419407755011 1.76277221169694 1.99941566015066 1.23241696488421 0.179165771608333 0.182963005404458 0.177647243347781 0.174290262152512 0.175788933439201 0.176025676685440 0.176969869924390 0.175788620914055 0.179044983160923 0.183249060121764 0.174844034672975 0.179575823261001 0.173851406329529 0.174072429248249 0.182023433977022 0.175814239137929 0.1738140555501 0.182069352611902 0.181352788039792 1 1 - 10202870 10203208 10203049 10202522 10203382 - gene protein_coding_gene FALSE TRUE AT1G29195.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30230.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90229.1) 0.122740273239331 1.28298398888072 0.226151380155409 1 0.161985289275352 3.48703349465512 0.122740273239331 0.083876632105196
AT1G01760_at 1.77994091990241 2.00151324585207 2.14446188150251 1.59107477869154 1.91087246899788 1.93057146164099 1.87355968426168 2.39189140433222 2.03010375354383 1.98986217471974 1.74390274476320 1.79806260345617 1.73045608679999 1.87300300503873 1.78376583790476 2.00228763834948 1.56695907629885 1.73028950741421 1.85566912762867 0.200158266695058 0.208552135352924 0.212865570863606 0.199760691228927 0.202626216682466 0.204513784852822 0.198262384725557 0.207620227341971 0.208403459652974 0.201295255966438 0.200521955450632 0.200265361173370 0.203280080085995 0.206974921493494 0.201327632274258 0.201461868227895 0.202055543716645 0.199590841597254 0.206704703934896 1 1|0 -|/ 276877 277752 277296.333 276866 278448 - gene protein_coding_gene FALSE TRUE AT1G01760.1 RNA binding / adenosine deaminase similar to OSJNBa0032F06.25 [Oryza sativa (japonica cultivar-group)] (GB:CAE03442.2); similar to H0306F12.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86175.1); contains InterPro domain Adenosine deaminase/editase; (InterPro:IPR002466) -0.148717686003219 -1.28280939715849 0.226210346783964 1 0.161790376030209 3.82155364621462 -0.148717686003219 0.136744659597858
AT2G39280_at 3.2299233941597 3.42842762095099 2.52378113006541 2.60984676171389 3.02498491801286 2.68197317765609 3.51539153565829 3.22155255882193 2.57230180555898 2.80326925289273 3.80926897273329 4.22578661327835 3.34178863350981 4.37273633666538 3.86644803699751 3.84750189433600 2.38953684837049 3.86611630796499 3.10992615783904 0.283281841359154 0.275915298976121 0.291320865681295 0.285497245187176 0.283952697576001 0.301504463766521 0.297124779227156 0.283904878030627 0.299448311402633 0.282237364154121 0.291208013787424 0.27645756425309 0.29018216159282 0.277589448008905 0.290069411099376 0.278442742764232 0.294654502521779 0.275905751680246 0.286732833161091 2 0|2 /|- 16410548 16410856 16410684.857 16408837 16413728 - gene protein_coding_gene FALSE TRUE AT2G39280.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G37290.1); similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55020.1); similar to Os01g0835000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044724.1); similar to RabGAP/TBC domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73388.1); similar to putative lyncein [Oryza sativa (japonica cultivar-group)] (GB:AAN64504.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.123860801424697 1.28249644336696 0.226316075187614 1 0.161441043636281 6.30118365091934 0.123860801424697 0.0866673270562173
AT4G21720_at 5.69769877833388 4.85035219535683 5.19556165647369 5.12830074863942 4.20724493193385 4.71357402284323 3.95695093858689 4.50364003251121 4.53558522167679 4.0480986857299 4.66584728107474 4.76214238252966 4.3240405303757 4.72655774236243 4.55565677786257 4.52022292759148 4.66070867696131 4.20540489533731 4.14580518074237 0.212676206642584 0.202272265121233 0.205830138592874 0.199939353528083 0.201136135044083 0.205730943251958 0.207207046242958 0.20348725671965 0.208941957265822 0.199941669153368 0.199939353528083 0.203937781199042 0.201271492352763 0.201809610182039 0.202808982854379 0.199939353528083 0.200621247227388 0.199939353528083 0.208895062757799 4 4|0 +|/ 11542593 11544250 11543650.556 11542510 11544620 + gene protein_coding_gene FALSE TRUE AT4G21720.1 similar to Os04g0680300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054285.1); similar to hypothetical protein TTHERM_00059270 [Tetrahymena thermophila SB210] (GB:XP_001007659.1) 0.184209738077114 1.28242036291083 0.22634178431479 1 0.161356128597839 9.17953325365733 0.184209738077114 0.195617487301886
AT1G76110_at 8.81700808609077 8.53017405608952 8.8840599400336 8.68715892457936 9.36533725803378 8.81456916363418 9.69031806036814 9.15099083741174 9.06213528032304 9.18230501829388 9.08757407492635 8.89192920288313 9.16632037518296 9.10070494521802 8.41654570706564 9.45717491094512 9.44076800425623 8.80512892017935 9.4893700877394 0.144513739302651 0.146462181580357 0.146117383234508 0.151145728992052 0.141898127123220 0.136553160031750 0.138080903772830 0.137281012622601 0.142553776511220 0.151257506013942 0.138470244996676 0.135735037683546 0.135392330264181 0.142113424197754 0.159065525653067 0.136003691311521 0.147276159367016 0.138587554007436 0.136369553581884 1 1|0 -|/ 28560399 28561254 28560711.3 28559936 28562480 - gene protein_coding_gene FALSE TRUE AT1G76110.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04880.1); similar to glutathione S-transferase GST 16 - like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79159.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.154088316478242 -1.28226673036451 0.226393707117892 1 0.161184666990485 18.1376379056306 -0.154088316478242 0.146357918300079
AT3G44210_at 1.06443180187138 1.12940401758037 1.35301972987743 0.953969682617808 0.818568973778846 1.22213112072739 1.29269777363453 0.789982825596483 1.07082403681660 1.75511159060232 1.06490396399559 0.923791116899164 1.20697552063066 1.26050131644941 1.07456249689774 0.992811606682893 1.12738861812449 0.752961460275385 1.25381281740798 0.182107119848220 0.183627728265346 0.183650440651595 0.193845799953063 0.182096465794006 0.187134061476214 0.184347520416812 0.184612734415499 0.189467936260847 0.189506389238561 0.187608552446326 0.181873598833452 0.186318687793552 0.188892456343697 0.184282110481989 0.184763663410362 0.193140644553132 0.181873598833452 0.198091990018136 3 0|3 /|+ 15927451 15928276 15927793 15927257 15928319 + gene protein_coding_gene FALSE TRUE AT3G44210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43870.1) -0.14581793185077 -1.28182510453839 0.226543016321800 1 0.160691872368084 2.28322732109555 -0.14581793185077 0.131686191125442
AT4G36810_at 7.90523035285165 8.31008066392856 8.07492726031856 8.13424433745835 8.27323009337958 8.10052511625394 8.90071101506184 9.09061864604527 8.70675998806122 8.48905933801635 8.74297749512682 8.91481811321057 8.58388172874889 8.85437839650302 8.52532146862808 8.71070500881638 8.32234548921318 8.59366731975184 8.28946260821734 0.152721498431804 0.157137001032062 0.165570922366862 0.161197234810159 0.154977976191982 0.153019493915529 0.162917173503682 0.166841731911199 0.161114811544287 0.151303370064335 0.152225172480412 0.151946676727437 0.152766993970399 0.164452854975694 0.17296997993351 0.148158611729468 0.173694131973682 0.15885504365705 0.156216949620809 4 4 + 17344039 17344541 17344218.182 17343378 17344869 + gene protein_coding_gene FALSE TRUE AT4G36810.1 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. Identical to Geranylgeranyl pyrophosphate synthetase 1, chloroplast precursor (GGPP synthetase 1) (GGPS1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] (GGPS1) [Arabidopsis Thaliana] (GB:P34802;GB:O23201); similar to geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative [Arabidopsis thaliana] (TAIR:AT2G18620.1); similar to geranylgeranyl pyrophosphate synthase (GB:AAA32797.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.122505284108839 -1.28176425618475 0.226563594817926 1 0.160623983370946 16.9242488634613 -0.122505284108839 0.0835899183026135
AT1G26840_at 2.10681197029998 2.24672925391442 2.3131467528001 2.74117121455984 1.78720998044446 1.71621831627870 2.30972459169604 2.33589455112973 2.47083329269502 2.47553425482213 2.37472564396801 2.18740576776134 1.98446435992212 2.57570415202041 2.08127902464284 2.43494013151135 2.48929873659237 2.06228172001016 2.26778566128110 0.203807356541004 0.203807356541004 0.208511411188984 0.209505483448979 0.205069994869902 0.210230249652294 0.205009629210806 0.203807356541004 0.209572296893134 0.207679358177041 0.204086628912656 0.215095681972875 0.203807356541004 0.208776836382725 0.212117846406908 0.210673898089498 0.207100934100238 0.203807356541004 0.210964537208412 1 1|0 +|/ 9299396 9300527 9299747.667 9298809 9300686 + gene protein_coding_gene FALSE TRUE AT1G26840.1 ATORC6/ORC6 (Origin recognition complex protein 6); DNA binding Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Identical to Origin recognition complex subunit 6 (ORC6) [Arabidopsis Thaliana] (GB:Q9ZVH3;GB:Q6EWW9); similar to 3975 (GB:AAD14490.1); contains InterPro domain Origin recognition complex subunit 6; (InterPro:IPR008721) -0.120654409975888 -1.28170448217686 0.226583811460242 1 0.16055729527677 4.53385341805024 -0.120654409975888 0.0790211007665353
AT1G27510_at 6.63134299629231 6.85642398869966 6.7030508310394 6.44526948954261 7.10821467081673 6.59289093252387 6.96398409189594 6.80186561752161 6.37167426367169 6.06355014534796 5.87970863303431 6.04804570801863 6.22920089953675 5.63279413281339 6.48806253353999 6.34924357854117 6.27623584730706 6.08259687602614 6.44019011025616 0.189009286440945 0.188601417005948 0.184909708341835 0.187333235785817 0.189326371636633 0.193177070096997 0.189160350773673 0.19606396185129 0.197308557524621 0.186323724969251 0.187352666104312 0.180502118539511 0.185298907947872 0.193663335836633 0.195730167016555 0.18312627703585 0.186748577313034 0.199025963330251 0.192846563888044 1 1 - 9555614 9556378 9556067.455 9554732 9558354 - gene protein_coding_gene FALSE TRUE AT1G27510.1 similar to EX1 (EXECUTER1) [Arabidopsis thaliana] (TAIR:AT4G33630.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44852.1) -0.134808253139073 -1.2813734158833 0.226695810631807 1 0.160187974722449 12.9704007602219 -0.134808253139073 0.110667561535997
AT2G13290_at 6.01923726173141 7.05665476478353 5.96364276621257 6.62443860643125 7.35085838676234 5.95877429906902 7.03324006460292 7.19146938058471 5.47259124533543 5.82884194417616 5.17804798909316 5.28522432148747 5.65826909231237 5.92369883319858 4.97358911411261 5.41763488476037 5.73999493111287 5.61693739157196 5.69664257284878 0.274918642258023 0.286210418885189 0.282623621175191 0.301586721853968 0.279326461549618 0.286303355292931 0.293156985350834 0.285249338338259 0.294579639909647 0.275855737890746 0.276985544234888 0.278565425717755 0.278026900324663 0.282184909175322 0.287927118060694 0.274918642258023 0.289731557319939 0.278966378437241 0.274918642258023 2 2 + 5519710 5520163 5519933.182 5518644 5520347 + gene protein_coding_gene FALSE TRUE AT2G13290.1|AT2G13290.2 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G12990.1); similar to Os12g0611900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067255.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); similar to Os04g0477500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053087.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) -0.271286268860401 -1.28125200835112 0.226736893894183 1 0.160052555837148 12.2198893531854 -0.271286268860401 0.322635386956421
AT2G45820_at 10.6392235950704 10.5724921439186 10.6950124149708 10.6335323360778 10.8999424523734 10.9357797442584 10.5905113137829 11.1159229998604 11.1073001413555 11.2085446848522 11.5736656350236 11.3092488630249 11.4847059644128 11.3977926739093 11.2048867074112 11.6093161080366 11.1708444160310 11.3228132843322 11.2641983751389 0.0864810577220359 0.085653700923979 0.0863189046009663 0.082589820487958 0.0802768545715043 0.0850252426217052 0.0839681849691645 0.0834923767068748 0.0895246265981528 0.0868008902440584 0.0803998520336352 0.0803294453544102 0.0805305429585278 0.0825828730493345 0.0806936066422615 0.0799093010708636 0.083910208839641 0.0804541478523313 0.0822790795149831 2 2|0 -|/ 18870245 18871602 18871108.75 18870032 18871765 - gene protein_coding_gene FALSE TRUE AT2G45820.1 DNA-binding protein, putative similar to DNA-binding family protein / remorin family protein [Arabidopsis thaliana] (TAIR:AT3G61260.1); similar to DNA-binding protein (GB:AAA57124.1); contains InterPro domain Remorin, N-terminal region; (InterPro:IPR005518); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.126170348251292 1.28040455165067 0.227023834849272 1 0.159107552190245 22.0490555951915 0.126170348251292 0.0924790001126389
AT1G71120_at 1.35235599228284 1.80646997203875 1.39320500124827 1.22018987945342 1.58123522616111 1.61234068445321 1.51941902316052 1.70637868863987 1.66747439811776 2.30793022570383 1.5125545782033 1.84586891501980 2.15372993550184 1.68404164936299 2.05495845410429 1.97769292398291 1.81101575387205 2.12039819589803 2.02761578649604 0.248458209866692 0.252250945038493 0.252658074194368 0.249296463854800 0.255287711389636 0.250187737886982 0.244704173458634 0.247950983159481 0.244039658693503 0.243672539591248 0.251768700407578 0.243295510264467 0.246083964962246 0.254983854419945 0.245511697994018 0.247853355500098 0.253606239629556 0.246933067944622 0.244255948754063 1 1 - 26824751 26825388 26825154.455 26824734 26826082 - gene protein_coding_gene FALSE TRUE AT1G71120.1 GLIP6 (GDSL-motif lipase/hydrolase 6); carboxylic ester hydrolase Contains lipase signature motif and GDSL domain. similar to GLIP7 (GDSL-motif lipase 7), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT5G15720.1); similar to Os09g0132200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062626.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96893.1); similar to lipase SIL1 [Brassica rapa subsp. pekinensis] (GB:AAM47031.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.125193736948774 -1.28032951928498 0.227049254352844 1 0.159023904772021 3.47196898552093 -0.125193736948774 0.0902667467417491
AT2G02050_at 8.83038152939486 9.1849911472642 8.86719356524095 8.93780303160884 9.07416627741373 8.4118859693937 8.87085316980308 9.21258758839778 8.97108213079214 8.8363277075475 9.53122420162601 9.72676528480951 9.3275064618757 9.50135505788669 9.28233827624513 9.38419720384374 8.67810410066798 8.92386130554887 8.55731406278804 0.139215221411375 0.138359951456541 0.133693604277019 0.139437374694401 0.132227736782746 0.151068782388882 0.136317431058673 0.135975143469918 0.144403353047847 0.136529092043070 0.138344359374800 0.135496448824308 0.135281184440262 0.136852677050704 0.138101101569158 0.133970475449966 0.140423152735519 0.142069274735049 0.136542404194316 2 2 + 490025 490303 490167.545 489965 491993 + gene protein_coding_gene FALSE TRUE AT2G02050.1 NADH-ubiquinone oxidoreductase B18 subunit, putative similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN17398.1); similar to Os03g0129900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048851.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85408.1); contains InterPro domain p8MTCP1; (InterPro:IPR009069); contains InterPro domain NADH-ubiquinone oxidoreductase B18 subunit; (InterPro:IPR008698) 0.152118269193194 1.28016845123862 0.227103828895528 1 0.1588443551074 17.9650629282841 0.152118269193194 0.143346443649749
AT2G39160_at 2.95329285505609 2.94598034316812 2.48151938041155 3.32552472024592 3.15344158182005 2.98980052803276 3.03253387835058 3.41256515009355 3.51417472632414 3.56922772869599 3.28767829963848 3.21607207338828 3.71623426665411 3.11554235693372 3.49414736962871 2.98918825707526 3.04229197608924 3.8540057393663 3.61944796856996 0.199847503237476 0.206140716820433 0.211732783908426 0.198325000782575 0.198698252265350 0.206225987968431 0.202275849509099 0.205923555115032 0.200412767282685 0.198325000782575 0.202444217211120 0.198325000782575 0.203441983097770 0.20552694635434 0.200443311249339 0.198325000782575 0.200170515614889 0.198325000782575 0.200287602253066 2 2|0 -|/ 16340593 16341227 16340825.4 16340568 16341251 - gene protein_coding_gene FALSE TRUE AT2G39160.1 unknown protein -0.163371634778057 -1.27987027913544 0.227204886469740 1 0.158512012219528 6.49033822975239 -0.163371634778057 0.162671443675521
AT3G43740_at 6.49029355796908 6.82396402085875 6.5002668890341 6.86649341486591 6.79322825046841 6.26641044207788 6.51711865179978 6.6518582447821 6.3816733602502 6.30402229743795 7.13734635221734 7.06177704132075 6.6841766095917 6.80318946392506 6.8545435656714 6.70082352472303 6.07993712212781 5.71483137384476 6.30106153605085 0.211671299657748 0.208425979667753 0.224498782772534 0.206999019859938 0.213975482402453 0.215471116882044 0.213649593211878 0.215579013479287 0.242073855513673 0.211345803529441 0.206999019859938 0.206999019859938 0.207405174641737 0.214660970098516 0.224788409508511 0.212093906349953 0.219273689213079 0.24632707080085 0.214301133683441 3 3|0 +|/ 15655312 15656407 15655867.9 15655041 15656649 + gene protein_coding_gene FALSE TRUE AT3G43740.1|AT3G43740.2 leucine-rich repeat family protein similar to leucine-rich repeat protein, putative [Arabidopsis thaliana] (TAIR:AT5G21090.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABE82625.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.143225098678605 1.27983266489823 0.227217637423980 1 0.158470091298981 13.0929527821107 0.143225098678605 0.127303980063842
AT3G05260_at 1.04454404491812 1.10952080917909 1.51400031717815 1.49598040261373 1.24318742306139 1.19676469520330 1.36925883445167 1.13265427920228 1.29664504358682 0.661990660438072 1.02258206039122 0.937215542728296 1.56215555169567 0.943752840212203 0.79554450793726 0.833777598232637 1.27830987588474 1.29491410039239 1.23332761986853 0.203697907744063 0.200162130196751 0.200162130196751 0.204206837584855 0.200162130196751 0.213179881250353 0.208206466493253 0.201127384121339 0.210806878050969 0.224382409114106 0.200162130196751 0.206446021974629 0.208419416198429 0.209223534211649 0.211892830668720 0.200162130196751 0.209830091007649 0.210931511010642 0.209261149164925 3 3|0 -|/ 1497838 1498370 1498075.1 1497495 1499010 - gene protein_coding_gene FALSE TRUE AT3G05260.1 short-chain dehydrogenase/reductase (SDR) family protein Identical to Glucose and ribitol dehydrogenase homolog 2 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9MA93;GB:Q944H4); similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G54870.1); similar to seed maturation protein PM34 [Glycine max] (GB:AAF89645.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.109016226314756 1.27978485030707 0.227233847065356 1 0.158416803398526 2.33699849288369 0.109016226314756 0.0433271243971719
AT2G15535_at 0.715618653865716 0.617603089585917 0.552756737898945 0.627638894848347 0.538854386884404 0.815702631419341 0.648794093607783 0.707001563156843 0.733094941028354 0.317780698153695 0.696549625927734 1.20326573511251 1.14372006593441 0.85199401959382 0.583838698805822 1.00481306148169 0.496781455051491 0.528049418010143 0.60454512737216 0.193005160891614 0.195877710583736 0.195736927989356 0.192479095297918 0.194039063829483 0.197019960823504 0.203014731570749 0.190456172339608 0.195327915025214 0.194062502694704 0.190968658696627 0.195567761408219 0.190456172339608 0.192007189921715 0.190456172339608 0.195343644241522 0.194321720181277 0.194573791092292 0.208167923381056 2 2|0 +|/ 6785333 6785679 6785530.3 6785277 6785935 + gene protein_coding_gene FALSE TRUE AT2G15535.1 LCR10 (Low-molecular-weight cysteine-rich 10) Identical to Putative low-molecular-weight cysteine-rich protein LCR10 precursor (LCR10) [Arabidopsis Thaliana] (GB:Q8S8H9;GB:P82725); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat; (InterPro:IPR010851) 0.111651700256830 1.27949721139211 0.227331379501752 1 0.158096268734069 1.33571297249563 0.111651700256830 0.0534084510533472
AT1G22440_at 1.53223803394222 1.43997002079066 1.98942581959214 1.85253475779945 1.55879331058000 1.59531431669695 1.50512090449394 1.63225339489988 1.57290529039651 1.85843591731311 1.75935823115713 1.54931062650912 1.47390708684332 1.56294010049105 1.51125150154600 1.6961645249888 1.54268909423197 1.58818725759654 1.34527790757070 0.177435088698878 0.181690750181113 0.183170626716583 0.184415319417461 0.1754122467964 0.179199737228205 0.176476160932590 0.174615561662616 0.180436153293688 0.180510772311107 0.176986708776996 0.177286975410207 0.182815245284591 0.174615561662616 0.178864512456332 0.180659716563381 0.180026512883629 0.178427506427233 0.182479806226087 1 1 + 7923474 7924707 7924160.727 7922417 7924933 + gene protein_coding_gene FALSE TRUE AT1G22440.1 alcohol dehydrogenase, putative similar to oxidoreductase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G22430.2); similar to alcohol dehydrogenase ADH [Lycopersicon esculentum] (GB:AAB33480.2); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.107445571897921 1.27886545912896 0.227545713306008 1 0.157392447612632 3.2270475321897 0.107445571897921 0.0366079146413158
AT1G50490_at 3.88625334516088 3.77923878116624 3.39603957800353 3.51721723395292 2.86721982024754 3.58768794869564 3.60142297379752 3.29049568391071 4.35195111943431 4.43879382769937 4.04027413607523 4.49012614444929 4.15698333701787 4.31554769095446 5.15336926513749 4.2082437694378 4.57623450836126 4.51652032476624 4.50949800138637 0.213345547945566 0.227172891266827 0.221022690438081 0.217331458206251 0.222939970153347 0.210213156549255 0.220304934333032 0.219123716111822 0.216120829267538 0.210593587511970 0.212363955282496 0.213413256941302 0.210280148616629 0.211483169162349 0.213463206497810 0.213944641347871 0.211943561429992 0.213954378897468 0.210971583166010 1 1|0 -|/ 18708675 18709923 18709314.222 18708473 18710146 - gene protein_coding_gene FALSE TRUE AT1G50490.1 UBC20 (ubiquitin-conjugating enzyme 20); ubiquitin-protein ligase Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells. similar to UBC19 (ubiquitin-conjugating enzyme 19), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G20060.1); similar to hypothetical protein DDBDRAFT_0206182 [Dictyostelium discoideum AX4] (GB:XP_641954.1); similar to Os01g0273100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042713.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -0.149281734966163 -1.27854418267144 0.227654775441326 1 0.157034616285291 7.92348527721602 -0.149281734966163 0.138647595623474
AT1G31960_at 1.91475907704999 1.76072615053207 1.58774105665289 1.603451261937 1.03446073830278 1.58213222137031 1.44452781305398 1.31542673682513 1.70172156847800 1.7340131791694 1.44337388564945 1.39466148777586 1.90605355228609 1.64090383422497 1.72590537256334 1.51797480581648 1.98006587347982 1.79267720637781 1.898250000156 0.172664895669522 0.172647813251181 0.171429666234867 0.172094647191850 0.178908904155830 0.172364440288612 0.176480519360273 0.175872736024042 0.171429666234867 0.176998037567434 0.173218131600990 0.179508923122188 0.176480086391375 0.176565601854079 0.177352198299194 0.171508892093245 0.181583623988444 0.171429666234867 0.178923332936764 1 1 - 11479154 11479596 11479370.727 11479113 11479634 - gene protein_coding_gene FALSE TRUE AT1G31960.1 unknown protein -0.129853269231144 -1.27851276445186 0.227665443112515 1 0.156999626758592 3.25700159106862 -0.129853269231144 0.100993980378084
AT3G44610_at 3.79626057411673 4.69923371107885 4.24206950380261 4.66603623084947 5.08429885485883 5.52996547642513 5.39069497235342 5.57640984513554 5.158701743344 5.34441906594788 5.17755831871828 5.585800432948 5.66950281206238 5.31761569926971 4.59784710129348 5.5878394072409 5.07713467621004 4.63295410185782 6.24615766700748 0.233247908987614 0.227046163005501 0.223475182824568 0.231236755979143 0.223556837965931 0.226787359094655 0.225550289340339 0.228382098154468 0.239781358186889 0.224558030552868 0.221968815061011 0.223228732017137 0.234374073256659 0.229120563935373 0.220799336710878 0.224632161464746 0.232797453645172 0.23910793242551 0.228083400446278 3 3 - 16199261 16199891 16199540.455 16199116 16203162 - gene protein_coding_gene FALSE TRUE AT3G44610.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to Os11g0150700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065761.1); similar to stpk1 protein kinase [Solanum tuberosum] (GB:CAA62476.1); similar to Os12g0149700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066161.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.181184257960082 -1.27836682634937 0.227714999938984 1 0.156837107966641 10.2675583431442 -0.181184257960082 0.191787750029653
AT3G04750_at 3.15683203359655 3.40634457457116 3.09779262998260 2.87779263631905 3.63286964951846 3.40476325843679 3.56899453312431 3.33475714964616 3.15225795127145 3.5799475577486 3.25534441296284 3.29265592132932 3.54658749079395 3.05375401050535 3.49693349460334 3.35084291979214 3.13190267545037 3.2359055286808 3.5398986042913 0.185056275242258 0.183009046775526 0.177401481470734 0.181027004659263 0.181495920878601 0.186854209074171 0.180246296581992 0.179022640654302 0.184062870554165 0.177401481470734 0.180920080938464 0.177492915927003 0.177401481470734 0.181821061412827 0.179103035230394 0.177472071925679 0.18370355614918 0.179265401999857 0.180524872389939 3 3 - 1301511 1301964 1301809.364 1301397 1303382 - gene protein_coding_gene FALSE TRUE AT3G04750.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP12991.1); similar to Os03g0743200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051231.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.120985713421336 -1.27805945516803 0.227819404000892 1 0.156494858485183 6.66978106375033 -0.120985713421336 0.080717745461639
AT3G11430_at 1.15660648362994 1.30554475334202 0.650044724591089 0.85537703252891 0.565328089278819 1.30635239415425 0.879979991739777 1.40004404509810 0.745095067419741 1.28485397292852 0.73320420671843 1.07858005667893 1.15644232138265 1.00263884590892 0.752853111646904 0.895185297863755 0.880635551962307 0.851457052244589 0.681532261861535 0.224510070222483 0.21803259278245 0.225827304947224 0.223744282976200 0.226633366897317 0.220904405988069 0.221152328557122 0.218934044297148 0.226526033903487 0.214872103611547 0.223242962586137 0.225741616294376 0.223913202383797 0.220866701557009 0.222563193636131 0.214872103611547 0.21864382982761 0.220409129701087 0.219635190003191 3 3 + 3597094 3597648 3597386.545 3595771 3597958 + gene protein_coding_gene FALSE TRUE AT3G11430.1 ATGPAT5/GPAT5 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 5); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase/ organic anion transporter Encodes a protein with glycerol-3-phosphate acyltransferase activity, involved in the biosynthesis of suberin polyester. Identical to Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15) (AtGPAT5) (GPAT5) [Arabidopsis Thaliana] (GB:Q9CAY3); similar to ATGPAT7/GPAT7 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 7), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT5G06090.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE83474.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.163110401749990 -1.27768263206274 0.227947451778008 1 0.156075356738213 1.92626051743907 -0.163110401749990 0.162701537332312
AT2G19660_at 0.698171886715772 1.03095440639839 1.10670395582337 1.21223929331662 0.902536991351373 1.05445637092081 0.714086968671809 0.884571024381178 1.00729430449985 0.838465646487968 0.83873386052423 0.835007264988459 1.21393151094757 1.27273119555864 0.698036827098206 0.664538306494047 1.16662519996547 1.0902642487753 1.07681414559854 0.210469283351238 0.206013203002876 0.207983180448699 0.212442192441892 0.214928489357333 0.213303944231074 0.215495888060746 0.209939998532448 0.205954071757507 0.208180211578185 0.206622154104201 0.206116521382854 0.210568611173886 0.210925301633817 0.213469864715228 0.214035089831099 0.217535980064724 0.212090802663817 0.215264527145312 2 2 - 8504148 8504616 8504384.091 8503802 8505790 - gene protein_coding_gene FALSE TRUE AT2G19660.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19650.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37620.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G04680.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.117665133788230 1.27761322185387 0.22797104435722 1 0.155998094873401 1.92380257085881 0.117665133788230 0.0721922631197179
AT1G54540_at 1.08279615171992 0.731961340484206 1.42972832660187 1.08326515035594 1.06737367845533 1.02524499356311 0.887844966889074 1.11971609182787 1.36766858092039 1.54226176565124 1.45049706410892 0.552905842222346 0.715417890194545 1.26838697865123 0.818407728074233 0.863578888768658 1.29143424998406 0.953312871220442 1.40601941173402 0.194783924531140 0.195201169958799 0.198523070257399 0.200087089694528 0.195632596612633 0.201610885473133 0.196737703852456 0.198011173487099 0.201718321074042 0.202927463382734 0.199709900897405 0.196808784463063 0.204759573383422 0.197282830121511 0.204483161053872 0.194473809043869 0.193678267835935 0.198066120694387 0.200916642247676 1 1 - 20371483 20371898 20371694.727 20371239 20372101 - gene protein_coding_gene FALSE TRUE AT1G54540.1 similar to harpin-induced protein-related / HIN1-related / harpin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G65690.1); similar to Os04g0677300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054263.1); similar to unknown pollen protein [Petunia integrifolia subsp. inflata] (GB:AAS90599.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.126791915384184 -1.27727179706546 0.228087123805603 1 0.155618092097007 2.2674376417813 -0.126791915384184 0.094574150834284
AT4G34720_at 11.0219785764650 11.123243683014 11.1376343518752 11.3077066869584 11.3752039952686 11.3712571385827 11.5217901365051 11.7422005298177 11.4512098116032 11.4391292498398 11.761198916653 11.6157255387472 11.7017562609443 11.6922506210198 11.6357857008121 11.5462022579925 11.5617393190603 11.7386664234519 11.2515931032794 0.0643493033550854 0.060679607792317 0.0632570668305517 0.0639346904968332 0.0606585760697805 0.0616687535453716 0.0633858610035665 0.0638611460900537 0.0761006487752184 0.0636226343949824 0.0635286899422503 0.061737054270554 0.0660321063374488 0.066069131575457 0.0623524301636109 0.0606585760697805 0.068183753720109 0.0612974744627666 0.0648647324503488 4 4|0 -|/ 16568229 16568681 16568419.1 16567829 16569300 - gene protein_coding_gene FALSE TRUE AT4G34720.1 AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AVAP4) [Arabidopsis Thaliana] (GB:P59229;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q944R9;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 2) (AVAP2) [Arabidopsis Thaliana] (GB:P59228;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3), ATPase [Arabidopsis thaliana] (TAIR:AT4G38920.1); similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (GB:Q43434); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, V0 complex, proteolipid subunit C, eukaryotic; (InterPro:IPR011555) 0.110834443324245 1.27704818908168 0.228163173312233 1 0.155369257889831 22.8437817296821 0.110834443324245 0.0512707963754556
AT2G22640_at 6.50683369545991 6.53069052219245 6.78631231230794 6.91874380362942 7.36922221691842 6.87108659055988 7.39000799226324 7.00733591323029 7.15278238927222 6.43047358685768 7.2102136864908 7.16466297780119 6.76425244678561 7.0848465974856 6.99204574299817 7.23201721882414 6.94301384708959 6.95016617494025 7.12009020203156 0.173270860459070 0.171217534030189 0.173030429446722 0.175134057064812 0.170788898908143 0.182776950077506 0.166760386365992 0.174015818083012 0.173500571331172 0.178874942836738 0.173453976024522 0.171974786033646 0.169632589640764 0.175667592689337 0.171433199177482 0.167611571997998 0.166760386365992 0.167893238636245 0.171432145019075 2 2 + 9630363 9630459 9630415.75 9630148 9631298 + gene protein_coding_gene FALSE TRUE AT2G22640.1 BRK1/HSPC300 (BRICK1) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2. Identical to Protein BRICK1 (AtBRK1) (BRK1) [Arabidopsis Thaliana] (GB:Q94JY4;GB:Q9ZQ49); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84182.1); contains domain no description (G3D.1.20.5.30) 0.134580571949438 1.27684248042151 0.228233153438386 1 0.155140369928734 13.8944129954564 0.134580571949438 0.111171192938708
AT1G08750_at 5.79129632791704 6.49480993876012 5.78151788098812 6.20711109383979 6.5139887213661 6.26205191532113 6.78510088988549 6.24148516353904 4.34824314941188 4.504978864591 5.39634247042889 5.5600391627308 4.94185274422807 4.86718412758905 4.98631493148934 5.51519584734915 5.71000929448969 4.44441101780539 5.24210435624504 0.250256696814629 0.250810474294139 0.254152717114435 0.246911960977766 0.246911960977766 0.252254607020639 0.246911960977766 0.247347041749502 0.256098032536860 0.249718904895363 0.251380287139061 0.255879485118332 0.253941024438808 0.255436641599891 0.249137905891483 0.249561320258934 0.246911960977766 0.252782337372960 0.246985527327825 1 0|1 /|+ 2803018 2804369 2803639.556 2801070 2804540 + gene protein_coding_gene FALSE TRUE AT1G08750.1|AT1G08750.2|AT1G08750.3 GPI-anchor transamidase, putative similar to ALPHA-VPE (ALPHA-VACUOLAR PROCESSING ENZYME), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT2G25940.1); similar to hypothetical protein DDBDRAFT_0186511 [Dictyostelium discoideum AX4] (GB:XP_638069.1); similar to Os02g0219400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046312.1); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) 0.171110449475593 1.27676231434994 0.228260429899122 1 0.155051177893179 11.197725652917 0.171110449475593 0.176061429486148
AT3G18180_at 1.79260554719806 1.56545544148517 2.04771778470476 1.76205532598860 1.56622320907726 2.04231891379873 1.89025790819169 1.63607670704712 2.02047120900603 1.77352045720589 1.86012110723454 1.86777251042109 1.84876584080011 1.87915005265938 2.37394467065528 2.04416344707054 2.00110014991556 2.18485227920116 1.81701420217207 0.163635278219348 0.166849413489634 0.170310432646952 0.171237289711762 0.163307034573581 0.166576506005466 0.167703318280428 0.170441501140479 0.167662073199973 0.172041880264013 0.170200343974047 0.168988565006933 0.165563591349452 0.167436911486561 0.166307361133227 0.162717140019222 0.167547396123938 0.171682731393716 0.167196698491992 3 3 + 6231299 6231750 6231541.273 6230276 6231884 + gene protein_coding_gene FALSE TRUE AT3G18180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18170.1); similar to glycosyltransferase [Triticum aestivum] (GB:CAI30081.1); contains InterPro domain Protein of unknown function DUF563; (InterPro:IPR007657) 0.135314187597604 1.27636736466041 0.228394850018942 1 0.154611819195020 3.72674837803944 0.135314187597604 0.112748189887755
AT3G51990_at 4.88274624031552 5.33668870383912 5.33175420944926 5.24009900563854 4.66280688017563 4.97283109505723 4.95047707171163 5.70565576289282 5.35938130393857 5.43831715766837 5.08716052707967 5.30598554025029 5.62278305453894 5.40473137803318 4.74846355899559 5.307438562749 5.54023629913283 5.8233400447592 5.74290148289933 0.192633414350762 0.195089908462899 0.194441986396217 0.200950246017227 0.196434641999669 0.197096390003432 0.206252072925724 0.199069534895634 0.196232107407291 0.197573972658376 0.202038067645364 0.194287005817832 0.193099819575433 0.208602145792847 0.195563706391463 0.192633414350762 0.195266410747582 0.192633414350762 0.195824580371643 3 3 + 19299470 19300024 19299791.273 19298856 19300308 + gene protein_coding_gene FALSE TRUE AT3G51990.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G28390.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV31339.1); similar to Os05g0387700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055424.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.162767545626345 -1.27631386903446 0.228413062068325 1 0.154552315909475 10.5696577138988 -0.162767545626345 0.162420289095827
AT1G69210_at 2.67047740507446 2.33049858208789 2.4948489212149 2.65722816531279 2.04284883182059 2.22666318723536 2.09202455179748 2.09581175649186 2.21855628342186 2.46821650601165 2.2335423967707 1.80430879856727 2.07735837494354 1.8952261903617 2.57882564077457 2.33362248214695 2.24919271945419 1.9855452720311 2.62793265701903 0.176971438740299 0.184998983481626 0.186894639536807 0.193197635228048 0.188148415566867 0.184260592147314 0.179904123586294 0.185544602456434 0.188517155132141 0.179092818739842 0.183844151879213 0.176971438740299 0.182054083916858 0.181442085437428 0.176971438740299 0.177300383795956 0.184585426836065 0.182058196443144 0.181641969440247 1 1|0 -|/ 26022271 26022938 26022572.9 26022101 26023721 - gene protein_coding_gene FALSE TRUE AT1G69210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77122.1); similar to Os04g0438300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052862.1); similar to Os07g0155200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058919.1); similar to H0315A08.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67581.1); contains InterPro domain Protein of unknown function DUF150; (InterPro:IPR003728) -0.117669105951638 -1.27622558736867 0.228443119258741 1 0.154454123962836 4.6177691167288 -0.117669105951638 0.0725498896314269
AT4G13820_at 3.09234196188671 3.2717100483966 3.75653565306866 3.58123753597631 3.30652328076956 3.08002923713719 2.41500300094041 1.83720659588766 2.61326956148823 2.43428032123044 2.17216775368449 1.59218080564904 1.62782684892420 1.93950152581026 1.82180899060674 2.00714182550379 2.16068792199209 1.93873040285396 2.18490563013409 0.313723748182654 0.317781262454836 0.324950028366287 0.325694718913379 0.320294262741201 0.315297770397717 0.310697754426583 0.311973453494405 0.312717046834519 0.310697754426583 0.315294616243985 0.323374197207469 0.314364188896095 0.314710732903498 0.317335366185648 0.310697754426583 0.316418623254331 0.312066072433175 0.313393958955618 4 4 - 8008167 8008794 8008501.9 8007985 8010739 - gene protein_coding_gene FALSE TRUE AT4G13820.1 disease resistance family protein / LRR family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13810.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13920.1); similar to verticillium wilt disease resistance protein precursor [Solanum torvum] (GB:AAQ82053.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.136851640026954 1.27621809795092 0.228445669323010 1 0.154445794026078 5.20173554608905 0.136851640026954 0.115836873950486
AT2G25740_at 7.56220179244957 7.85014530496128 7.3784193883428 7.71057757692942 8.34738850254618 7.98960765820028 7.44836151103527 6.94712987962965 6.23379350810162 6.10580679431729 5.7989098114202 6.24587932593467 6.31663813069033 6.51054579507594 6.16653184552413 6.41683872954953 6.66559527046428 5.99819267754123 6.80027470047543 0.216486466525072 0.21607473269428 0.212522018640123 0.210377210994734 0.221578625246824 0.213124409188223 0.21335363961473 0.210386915398557 0.212467590995485 0.21848730466016 0.218876684882812 0.212688024383626 0.216267290975352 0.215353076819158 0.216608070419352 0.213128122532060 0.217601292117311 0.219930687534746 0.216714087979221 2 2|0 +|/ 10989611 10990674 10990188.9 10987200 10991009 + gene protein_coding_gene FALSE TRUE AT2G25740.1 ATP-dependent protease La (LON) domain-containing protein similar to Os05g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056076.1); similar to Os01g0743600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044220.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG06776.1); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111) 0.144735886731324 1.27588185947901 0.228560178670503 1 0.154071856504737 13.9766538430484 0.144735886731324 0.130937418553763
AT4G35890_at 7.53968928608934 8.08462725212362 8.04174844455123 7.8122054755994 7.57181942273105 7.45034486541517 7.31105567829147 7.50297222610337 7.51940510374028 7.72801875025683 7.92125843748648 8.3874449941927 7.7125881130222 7.94605875791796 7.46645741247914 8.12688722835347 7.58301143428716 7.00497283101557 7.58486812703566 0.186023996113838 0.180248144533952 0.194182702396778 0.185505551803202 0.185037821655127 0.197194355291376 0.189409987204738 0.195555817570503 0.187523704341245 0.191536595635921 0.183023981970923 0.189350997640626 0.182068838269298 0.191804540857364 0.189675642914421 0.185113588028931 0.199536510660869 0.181731562557839 0.192433456855270 4 0|4 /|+ 16998992 17000387 16999776.7 16997142 17000836 + gene protein_coding_gene FALSE TRUE AT4G35890.1 La domain-containing protein similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G66100.1); similar to RNA-binding protein Lupus La [Medicago truncatula] (GB:ABE93453.1); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630) 0.133632174419505 1.27509847488969 0.228827149108951 1 0.153200913431233 15.3539822787490 0.133632174419505 0.109618265120338
AT3G21680_at 1.03218167136594 1.10467312636953 1.36136799887984 1.28122035691911 1.25601143110518 1.35255028556177 1.43663238365026 0.968372091972194 0.783494353780952 1.29747770539646 1.40326647458818 1.38557650669213 1.29565052824851 1.42788331064280 1.11052777618375 0.771863198387583 1.52661007923362 0.799160435589052 1.36219841402411 0.161541037942578 0.162864006146687 0.159354774137048 0.160132719684286 0.15755493258381 0.165396670829795 0.160884786867672 0.15755493258381 0.167686948102480 0.160436859034423 0.159622453231027 0.159111562273798 0.160423094946421 0.162856475545474 0.160487967162505 0.15755493258381 0.160523401606224 0.15755493258381 0.159183665519791 3 3 - 7633503 7633836 7633680.273 7633501 7633860 - gene protein_coding_gene FALSE TRUE AT3G21680.1 unknown protein 0.122333248702763 1.27463567415929 0.228984986530714 1 0.152686566327380 2.40552155810942 0.122333248702763 0.0848261123861772
AT3G53280_at 7.54917101969309 7.56914994493472 7.17763107197053 6.686098868368 8.08137175435975 7.38622366037452 6.98486011077601 6.98961973530236 7.08853287950895 6.99446207872514 7.08296813828271 7.58724984870606 7.56511881034667 7.6051193428694 7.03199298563304 7.34761888047435 7.29984382238096 7.2622183250082 7.21670773228268 0.152460102284897 0.162173755500392 0.15252902720772 0.151700896138919 0.159493735125816 0.170833890395884 0.151806307910595 0.156518419031968 0.163707933539540 0.167349050132533 0.152920185869152 0.151164748931732 0.153250738361186 0.158646073249276 0.156753594804858 0.163945218343929 0.158590823504216 0.156093476396544 0.154286818787856 3 3 + 19767845 19768374 19768121.727 19766682 19768591 + gene protein_coding_gene FALSE TRUE AT3G53280.1 CYP71B5 (CYTOCHROME P450 71B5); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B5 (EC 1.14.-.-) (CYP71B5) [Arabidopsis Thaliana] (GB:O65784); similar to CYP71B38 (cytochrome P450, family 71, subfamily B, polypeptide 38), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G44250.1); similar to CYP71B22 (cytochrome P450, family 71, subfamily B, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26200.1); similar to CYP71B21 (cytochrome P450, family 71, subfamily B, polypeptide 21), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26190.1); similar to Cytochrome P450 71B8 (GB:P58048); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.153748254232702 1.27459064464837 0.229000348493741 1 0.152636528629620 14.5268493537482 0.153748254232702 0.147376809424277
AT1G64160_at -0.00442869136207595 -0.42190853559567 -0.169652391952386 0.312742994614991 -0.25949143493372 0.0728391871748266 -0.097908768173081 -0.108836630114746 -0.258642231492317 -0.248373154512564 0.0397554492703612 0.227687882856620 -0.0435866994551191 -0.674701729616688 -0.254357729113559 -0.343003371069218 -0.069474229535411 -0.125693488747776 -0.363624249604643 0.203589326380486 0.199873158990602 0.20014272115782 0.198694954450303 0.198694954450303 0.201597440569303 0.200882715237743 0.200696098158294 0.214753677484563 0.198873048998370 0.208861177952669 0.208778256295263 0.209523524109756 0.202416136842955 0.210942875327974 0.198843744730409 0.205200002261682 0.210007272056036 0.207823689560879 1 1 + 23817798 23818194 23817981.727 23817673 23818502 + gene protein_coding_gene FALSE TRUE AT1G64160.1 disease resistance-responsive family protein / dirigent family protein similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT4G23690.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25363.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.141085858740407 1.27399656729076 0.229203098338695 1 0.151976496906635 -0.307398009440828 0.141085858740407 0.124498102642267
AT3G56100_at 2.25400475122887 2.25650230850287 2.64132804522274 2.14859191728584 2.17826789039070 1.95576849025636 1.70196728199882 2.12647082560062 2.37934531289176 2.36302197883601 2.46043744221194 2.73810981905921 2.49295624810191 2.19468581302344 2.60918868802468 2.36002715398407 2.40477315236953 2.85496616389388 2.4104925636917 0.190523909676821 0.190674307112169 0.194268938381531 0.191983059591854 0.193326013509053 0.196442758108249 0.194476502083262 0.195065188663708 0.193336981553349 0.195238727367630 0.195357162360367 0.198469864665785 0.187735823566777 0.197878387349196 0.206023836459737 0.191329517223058 0.190029351638529 0.197912383020934 0.197146324201606 3 3 - 20828069 20828578 20828368.182 20827910 20830496 - gene protein_coding_gene FALSE TRUE AT3G56100.1 MRLK (MERISTEMATIC RECEPTOR-LIKE KINASE); ATP binding / protein serine/threonine kinase Protein kinase expressed in meristematic cells. Phosphorylates AGL24. similar to IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G51740.1); similar to receptor-like kinase RHG1 [Glycine max] (GB:AAM44273.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95455.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91103.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.13817961778327 1.27377731515059 0.229277962708152 1 0.151732959325192 4.60720252808922 0.13817961778327 0.118955964676227
ATCG00590_at 9.51600743489223 10.4719777896770 10.5772506732925 9.92510927703354 10.6956159219218 9.07141495914155 10.4598092581379 10.4162398233891 12.1372954801905 12.2025544276630 13.2605273395492 13.3108766249337 12.7645125471211 12.8178312779924 12.5921296243611 13.0598722398314 12.3741487011725 12.4530918925700 11.9866255895731 0.141981286824832 0.137734685583779 0.134201524476274 0.137257229170083 0.134087361574313 0.139710806400003 0.134315499476453 0.138970281318012 0.143565085368268 0.134219025232076 0.128719983983522 0.131372200059672 0.129242358885150 0.131362444074876 0.136465475823391 0.128719983983522 0.137744092874493 0.137308732631706 0.128719983983522 C C + 65712 65780 65748 65712 65807 + gene protein_coding_gene FALSE TRUE ATCG00590.1 similar to cytochrome b6/f complex subunit VI [Gossypium hirsutum] (GB:YP_538953.1); contains InterPro domain Cytochrome B6-F complex subunit VI; (InterPro:IPR007802) 0.285818873227933 1.27348670012049 0.229377224796282 1 0.151410200806982 22.6106526155608 0.285818873227933 0.345203706487238
AT2G02610_at 2.18062050785423 2.6759705828723 2.42832958762285 2.8943865074906 1.78320400232575 2.62223352855553 2.48433518144928 2.61300152722689 2.27732946874635 2.82945153142008 1.72921753510585 2.32650363771384 2.40152143315558 1.89845031308399 2.02920412152916 1.89827469699277 2.59380588139218 2.46637952704367 2.29711690061175 0.242476055627294 0.243486152516118 0.241407849123758 0.242969009427162 0.239432198210445 0.239432198210445 0.239432198210445 0.239975479413691 0.253494535558281 0.246179599758726 0.246987531634675 0.243557687124179 0.243848761947595 0.251915206493760 0.247380573300791 0.244286696767685 0.245700650836108 0.243904056115873 0.249532186334244 2 2 + 712014 712505 712292.273 710711 712818 + gene protein_coding_gene FALSE TRUE AT2G02610.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02640.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02680.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G02690.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.178244933512962 -1.27346862170567 0.229383400789409 1 0.151390124578215 4.77820298326377 -0.178244933512962 0.188232753772858
AT3G09040_at 1.45706887189172 1.30498916368045 1.63346542866175 1.55892184218631 1.36835192416694 1.59059659307913 1.25022228014222 1.38831007133980 1.25987688893154 1.31925321407960 1.43677182629738 1.47042299768845 1.43339790301727 0.923576845349887 1.43202070955733 1.41901211140181 1.81935003908092 1.35326964922327 1.54930090611899 0.215539335168293 0.213584908001652 0.216916870173986 0.216181766483027 0.213584908001652 0.216213571886897 0.215888547743495 0.213584908001652 0.223092252514988 0.216752086152974 0.226773548534554 0.220717018303306 0.22599390112034 0.213584908001652 0.218117313053931 0.220096126898925 0.232484868472004 0.226878046276825 0.214731120171517 3 3 - 2761229 2761757 2761473.818 2761200 2764286 - gene protein_coding_gene FALSE TRUE AT3G09040.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to OSIGBa0140J09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67622.1); similar to Os04g0514500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053307.1); similar to PPR1106-17 [Physcomitrella patens] (GB:BAD67156.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.111260220375989 1.27326475869956 0.229453054330649 1 0.151163747217854 2.83755148684958 0.111260220375989 0.0539380919489428
AT1G30810_at 5.41686678665653 5.87820894998495 5.66856287848966 6.04850624428362 6.47616541209981 5.69452422496928 5.8586629987494 5.49738486058208 5.46143493706921 5.56724754924864 5.27516173971371 5.35457746818490 5.96233293686505 5.85609453208591 4.96940444178346 6.19269153672624 5.72865114752667 5.16203670098055 5.54310613315996 0.182203035842614 0.184502263938406 0.187217515435094 0.184024237469238 0.191686010040440 0.192535717827185 0.194842221940880 0.182524110757997 0.199301718618351 0.186127626125609 0.182535547729591 0.184104415056988 0.185569379237657 0.183885549285996 0.185774915997243 0.186570781904493 0.19035651842768 0.189384985525603 0.185634258809002 1 1|0 -|/ 10938163 10938832 10938586.667 10937885 10942273 - gene protein_coding_gene FALSE TRUE AT1G30810.1 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to MEE27 (maternal effect embryo arrest 27), transcription factor [Arabidopsis thaliana] (TAIR:AT2G34880.1); similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G20400.1); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.173924032062362 1.27316702843438 0.229486451764502 1 0.151055232998809 11.3606344708815 0.173924032062362 0.181392196385263
AT1G05410_at 3.84848740215626 4.28000485928991 4.03244611934083 3.91201358126768 4.55004785296272 3.70764029269413 4.56862282967558 5.11006268067984 3.91911460647315 4.27949036237461 4.42211113684365 4.15589968150345 3.88054772358859 4.49100354535925 4.50507552527777 4.35612446459864 4.02045908389258 3.88343307031066 4.31564132564688 0.238892615115622 0.243111630743705 0.244875087625885 0.258297454380139 0.252662275097914 0.267742253734306 0.243682299140501 0.245129626012139 0.247786744815206 0.238892615115622 0.250938470542405 0.244340593910503 0.246630244768033 0.241271445780796 0.239837011434537 0.243964919857355 0.247926486304723 0.242920012915634 0.243917100530702 1 1|0 -|/ 1585508 1586217 1585795.889 1585370 1587777 - gene protein_coding_gene FALSE TRUE AT1G05410.1|AT1G05410.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22520.1); similar to CDPK adapter protein 1 [Mesembryanthemum crystallinum] (GB:AAK69758.1); contains domain GAT domain (SSF89009)|similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G48160.2); similar to CDPK adapter protein 1 [Mesembryanthemum crystallinum] (GB:AAK69758.1); contains domain GAT domain (SSF89009) -0.179170566980221 -1.27280259103398 0.229611026044288 1 0.150650634931848 8.44403930746839 -0.179170566980221 0.1898496362376
AT1G03780_at 1.49960041532772 1.25438685568169 1.25189689283362 1.28153182911812 0.822523634235365 1.36029745103834 1.09375794726215 1.67410576617227 1.10748076550501 1.22458210983576 1.70945943942354 1.6208970553753 1.07671225303446 1.27800901255107 2.2242277660682 1.91931366517495 1.74164255859047 1.93044709243516 1.21899169432601 0.21880697794484 0.217742049531114 0.223339579224343 0.21432781201194 0.220058106099605 0.21432781201194 0.221982957710053 0.228118907568242 0.227199929669307 0.21871249649281 0.217020831667830 0.220131359603625 0.22508118717158 0.220752004630029 0.222626860937565 0.21432781201194 0.218546697462488 0.219606072635606 0.217096165358233 1 1 - 947787 948436 948103.636 947643 951809 - gene protein_coding_gene FALSE TRUE AT1G03780.1|AT1G03780.2 targeting protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22860.1); similar to PREDICTED: similar to restricted expression proliferation associated protein-100 [Strongylocentrotus purpuratus] (GB:XP_798362.1); similar to Os07g0507200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059737.1); similar to restricted expression proliferation associated protein-100 [Gallus gallus] (GB:NP_989768.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22860.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81485.1); similar to Os07g0507200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059737.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) 0.151251727235725 1.27243907280899 0.229735340848881 1 0.150247140358928 2.71539932990228 0.151251727235725 0.143438431956917
AFFX-Athal-5SrRNA_at 9.02276029651765 9.6057580373935 9.98683097573782 10.2410516599190 9.56047422117248 8.94794133359740 9.82244916223567 9.6413842191369 9.60399970397671 10.3572123324740 9.7658077490643 10.2686520310346 9.54005847875346 9.5529414248119 8.86441091256958 9.81052307972894 8.76734380453866 9.89398334594062 10.1463732857547 0.132186739801238 0.130367572011955 0.131376328774979 0.132844652607159 0.130055407044992 0.139970882951794 0.129924368457815 0.129437013936116 0.142019881781236 0.130753156770416 0.128072737885847 0.131661666158129 0.132783928699543 0.139363097554214 0.134779511996275 0.128223347609995 0.137356070850008 0.135242347502166 0.130298751863833 NA NA NA NA NA FALSE FALSE -0.158455025988734 -1.27229171106606 0.229785750719529 1 0.150083596770010 19.4004946769007 -0.158455025988734 0.155988941100169
AT4G09890_at 5.87215130910895 6.19203894960279 6.880033930218 7.13342908285903 8.03554471494805 7.48245253847077 7.9847097957665 8.27394595174524 7.45492710101083 8.19930249736035 8.18232545866626 8.1341391614816 7.76945455638954 8.63544008855422 7.59018071458047 8.9642368576751 8.0939941765474 7.30620085870719 8.6460182859291 0.235700897361988 0.226579595468139 0.230451449413087 0.235090217251284 0.228530643018113 0.228014880422009 0.241512630843653 0.236229431512552 0.239555924076859 0.231786356141459 0.227120796446830 0.225517973118283 0.233728102955303 0.233778718630237 0.230963889805711 0.224635755220826 0.247721980821177 0.232236165870541 0.228566685931910 4 4 + 6218504 6218737 6218623.636 6218393 6218924 + gene protein_coding_gene FALSE TRUE AT4G09890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11970.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81195.1) 0.143283710521610 1.27202183273619 0.229878094662231 1 0.149784118348075 15.3240778401776 0.143283710521610 0.129051182197228
AT1G10580_at 7.74989975624627 7.69111351745304 7.32997598058706 7.35932794243079 7.58603312858385 7.53084315082508 7.40531483145536 7.12931856448282 6.60572798241095 6.13619070673705 6.29915310670967 6.55446824405922 6.47987136615429 5.5970941170917 6.56112785918763 6.19722530118447 6.39364780279241 6.03734187412078 6.58619820375384 0.201370635381143 0.212217132074557 0.20801799403117 0.200657828251723 0.215793651865862 0.206041804020447 0.204041492275148 0.212334639857789 0.211068045664377 0.206682857394293 0.204057689237648 0.202625158793922 0.212294689561232 0.219471305286937 0.21522730552439 0.20560986315375 0.220251949280683 0.209226204497231 0.206130013599048 1 1 - 3492117 3492352 3492233.375 3491282 3493738 - gene protein_coding_gene FALSE TRUE AT1G10580.1 transducin family protein / WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54520.1); similar to hypothetical protein LOC514003 [Bos taurus] (GB:NP_001069111.1); similar to Os03g0397500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050302.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.110040519428720 -1.27184588013509 0.229938316381248 1 0.149588891998302 13.8265767789479 -0.110040519428720 0.0500176576757671
AT4G35520_at 1.13827684462991 1.09987703784040 1.21896792279546 1.38474757490205 1.31621209206395 1.12019429606602 1.03526813006640 0.872700724414922 1.48061199611325 1.14602811529199 1.12805997528399 1.35074804057002 1.17238552347232 1.31639626773140 1.03755487533896 1.17746907903177 1.44004040327936 0.905931549642532 0.951884924268965 0.186027679770014 0.182595541467711 0.189839532534336 0.190167511361214 0.190119698101142 0.185673505237186 0.188716646971508 0.182771427654728 0.186326002465650 0.182978852360088 0.179177854395147 0.180249458210783 0.187404530411164 0.187475025930208 0.184815180492817 0.181392513899108 0.193961602273365 0.184571975321193 0.182950819962052 4 4|0 +|/ 16870741 16871458 16871119.125 16865493 16871769 + gene protein_coding_gene FALSE TRUE AT4G35520.1 ATMLH3/MLH3 (MUTL PROTEIN HOMOLOG 3); ATP binding DNA mismatch repair protein similar to MutL. Required for normal levels of meiotic crossovers similar to DNA mismatch repair protein, putative [Arabidopsis thaliana] (TAIR:AT4G02460.1); similar to Os09g0551900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063871.1); similar to DNA mismatch repair protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD33895.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain DNA mismatch repair protein; (InterPro:IPR002099) 0.110865661477344 1.27181298305875 0.229949577190184 1 0.149552393551899 2.34023802427332 0.110865661477344 0.0530035037986691
AT3G50140_at 2.06752928696444 1.96947600588671 1.78331530269031 1.50889878294921 1.67990432806708 2.00576718298429 1.33990001903836 1.35313549657440 2.23717882468177 1.72052577870648 1.55153080879471 1.78862122780450 1.53637961669260 1.41904936410793 1.44515815392237 1.56573911126214 1.23586909057405 1.91901978712653 1.6117779703908 0.213442671366942 0.205215296671090 0.210876340120970 0.215512259289935 0.205946033589412 0.212075547644827 0.221714645557419 0.214967041977921 0.210603811813854 0.215845526103762 0.217983168738844 0.214693409521562 0.225313014262960 0.215028287841255 0.223211128819626 0.212318528293647 0.226359660016333 0.214797244828744 0.213821075186580 3 3 - 18603473 18604404 18603822.545 18603455 18605547 - gene protein_coding_gene FALSE TRUE AT3G50140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50130.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50190.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.118431049583667 -1.27176762582493 0.229965103898393 1 0.149502072000905 3.420573343792 -0.118431049583667 0.0756865706426781
AT1G12200_at 4.87734801998865 5.24448630738901 5.60163057057328 5.71691758016191 5.88352861241609 5.57899139752288 5.13491688213452 5.57882972176976 2.92191034897321 3.80710091634747 2.6703545822191 2.75743739340447 3.53961357954549 3.00105966395794 2.24309811717971 2.98039781961883 3.77864949891158 2.93641605804792 2.88098636334301 0.319606018297956 0.317142786996222 0.327886881721548 0.325113705830357 0.317202270572002 0.318621531568313 0.322827608939069 0.3184054099049 0.323892905925906 0.317142786996222 0.319723516712411 0.327395791935158 0.317142786996222 0.317142786996222 0.317142786996222 0.317142786996222 0.317142786996222 0.32303135199729 0.318199159177102 1 1|0 +|/ 4138918 4139802 4139350 4137531 4140026 + gene protein_coding_gene FALSE TRUE AT1G12200.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62580.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.135708801785394 1.27176563606549 0.229965785053215 1 0.149499864493276 8.54793657749378 0.135708801785394 0.114515011328181
AT1G50060_at 0.98789019875956 0.878730457138433 1.09217485458555 1.01282045943596 0.663268491591944 0.997456479546715 0.955189103270108 1.33218390306256 1.06610216219419 1.10258458449937 0.930010610979372 0.806504579426325 0.594759993959918 0.623711521878977 0.782846059610049 0.989924443591637 1.38653917892478 0.810388844171838 0.882882297577148 0.196851771933009 0.195494465965258 0.193680898657393 0.197507219816243 0.199419455055351 0.192857585734603 0.192005485445659 0.192668362329834 0.195643796446252 0.193451731487993 0.199692996802672 0.194092309325787 0.203534166623799 0.192005485445659 0.198555793139827 0.195001617187895 0.208705997706828 0.200161844557946 0.195032693192593 1 1 + 18554872 18556068 18555098.364 18554854 18556246 + gene protein_coding_gene FALSE TRUE AT1G50060.1 pathogenesis-related protein, putative similar to pathogenesis-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G50050.1); similar to Allergen V5/Tpx-1 related [Medicago truncatula] (GB:ABE86578.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.124336185811664 -1.27160019128851 0.230022427535270 1 0.149316323060494 1.93135191116957 -0.124336185811664 0.09025753207861
AT4G03100_at 1.86449736227237 1.93185733382632 2.27340876169767 2.19417651515853 1.62594504740297 1.81752549255755 2.13155603124844 1.98494049807962 2.06471735285763 2.20923543524070 2.34525014815993 2.6166036950589 2.1808131040455 1.90672191419517 2.73543756381473 2.4240461904122 2.25348807690294 1.97237441669160 1.98498648054279 0.241418307265953 0.250196959832487 0.259294550355551 0.26783702251274 0.246251921253034 0.257555843367793 0.246014864543778 0.249209059564668 0.251764975984186 0.244234487201535 0.242184950249854 0.253146348880347 0.243763358343498 0.261363340643058 0.249352208497956 0.250303930628522 0.246631613909035 0.244812876939738 0.244947147448659 4 4 + 1375240 1375889 1375575.909 1374281 1376231 + gene protein_coding_gene FALSE TRUE AT4G03100.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT5G22400.1); similar to rac GTPase activating protein 3 [Lotus japonicus] (GB:AAC62626.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026); contains InterPro domain RhoGAP; (InterPro:IPR000198) 0.108789973480288 1.27103910924250 0.230214606694087 1 0.148693996849523 4.17331586938402 0.108789973480288 0.0454624503425468
AT2G12170_at 1.83230637778862 1.92290881239232 2.10755217980882 1.79749930324229 1.83767193934097 1.97303038817773 1.87485638396987 1.49102576216834 1.89890943661944 2.10577379951297 2.19538259563000 1.89285371949446 1.92089406212801 2.05565506327582 2.38868188311463 2.22002989913545 1.95275955344435 2.10629918419951 1.97123340056297 0.152723130507106 0.158898040164596 0.163114567148546 0.155542843869358 0.155907437020800 0.156042035548902 0.156167331041587 0.159785612370007 0.156906492400147 0.153118026111851 0.159382581282969 0.159063263754865 0.158711742236193 0.157432483218966 0.158164259174885 0.151530940818104 0.16034425075954 0.16165262299388 0.164787193340098 2 2|0 -|/ 4897304 4898213 4897581.286 4897274 4898273 - gene protein_coding_gene FALSE TRUE AT2G12170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43390.1) 0.124130700691824 1.27098517429732 0.230233087101899 1 0.148634185127085 3.89637724700341 0.124130700691824 0.0899200831274461
AT2G23830_at 1.56783384210265 1.96661073253222 2.08297956710137 2.48970242225571 1.63018626873550 1.77675702713045 0.946141876209136 1.46521961185285 1.70394347956839 1.23170320168435 1.46581410030657 0.864094656733161 1.93795354431818 1.35645899742401 0.98327478347047 1.10899750800273 1.33341808508200 1.11841582867511 1.52234046911402 0.180870457677556 0.191086840945755 0.177459763112565 0.179772723499007 0.179109779117804 0.181136601902209 0.183242348266951 0.186276301199211 0.185765765821385 0.183071955820069 0.182124718368770 0.183246551383733 0.177576618916266 0.182444398726508 0.193032807342614 0.178261467427419 0.193745715445171 0.183174158647518 0.189369316107343 2 2|0 +|/ 10150733 10151528 10151076.3 10150726 10151591 + gene protein_coding_gene FALSE TRUE AT2G23830.1 vesicle-associated membrane protein, putative / VAMP, putative similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1) [Arabidopsis thaliana] (TAIR:AT3G60600.3); similar to Major sperm protein [Medicago truncatula] (GB:ABE80895.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.146756263422074 1.27059119049156 0.230368119260396 1 0.148197328108289 3.11920349588521 0.146756263422074 0.135753764519483
AT3G06510_at 10.2785914193392 10.4586697554296 10.8318135903985 10.8143420287017 10.6622814656494 10.2791962809441 11.1490829859271 11.1372995875185 9.9186852357659 10.5577757936871 10.0451230883318 9.93603780843092 10.2312360548896 10.0589541047636 9.77776541113147 10.4314906416235 10.4120816504257 9.97299195284 10.2258178160121 0.116928439519678 0.120035524237655 0.120683627850904 0.121163435710596 0.12031041188399 0.130014617087383 0.121367841572050 0.123039691356238 0.135863453355352 0.118755061311351 0.115842361246009 0.117849638156160 0.121122769172802 0.123203374408714 0.123196588600949 0.115842361246009 0.131104248457988 0.129610169108182 0.123131940482353 3 3|0 +|/ 2018470 2019483 2018959.25 2016443 2019680 + gene protein_coding_gene FALSE TRUE AT3G06510.1 SFR2 (SENSITIVE TO FREEZING 2); hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing similar to glycosyl hydrolase family 1 protein / beta-glucosidase, putative (YLS1) [Arabidopsis thaliana] (TAIR:AT3G60130.3); similar to putative beta-glycosidase [Glycine max] (GB:CAJ87636.1); similar to putative beta-glycosidase [Solanum lycopersicum] (GB:CAJ87637.1); similar to putative beta-glycosidase [Zea mays] (GB:CAJ87638.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.117442727532006 -1.27058877285217 0.230368948069205 1 0.148194647683179 20.87256115801 -0.117442727532006 0.0733446763164703
AT4G40090_at 0.668953654146469 0.632574118896487 0.721516737961167 0.897077445586832 0.636155494482149 1.02750734204962 0.704609413057226 0.80424043857336 1.22470444568509 0.770625688181537 1.92693655672181 0.918321767340031 0.743941086098584 0.900939823411193 0.82540841471212 1.06926745003308 0.807347667709752 1.26379180820659 0.818021423796441 0.178705261765379 0.184451015504422 0.181102473742313 0.183086900245981 0.178705261765379 0.178705261765379 0.179727403965989 0.186002223729542 0.183204391672885 0.1794902843479 0.198129635523530 0.180805783436351 0.181486526993228 0.190816644548124 0.178955620511903 0.183329953474962 0.184844736573145 0.183791347139068 0.184089200579148 4 4 - 18581207 18581359 18581276.455 18580832 18581560 - gene protein_coding_gene FALSE TRUE AT4G40090.1 AGP3 (ARABINOGALACTAN-PROTEIN 3) similar to AGP2 (ARABINOGALACTAN-PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT2G22470.1) 0.118590159038172 1.27029761739447 0.230468778922506 1 0.147871871899549 1.75896841776091 0.118590159038172 0.076463462962564
AT3G42600_at 0.492158085861168 0.561325566223596 0.92607594216788 0.822189255206236 0.808496502018216 0.86327403607148 0.936535544229473 0.451801760488303 0.761118316571018 0.901804814129441 0.907049238254633 0.681102330054969 0.740254797401197 0.693610984070982 0.86078097528957 0.762230714225349 0.880219449912457 0.604963967645301 0.6324762808805 0.202040315979354 0.204012029343158 0.199815482661038 0.207937574494565 0.214768732767846 0.205725122627849 0.221146981531236 0.198878492788406 0.205762281403382 0.210690712178952 0.199074582693674 0.206691892159034 0.207173635973056 0.199663361844746 0.197945429149254 0.199705470221817 0.201272698580878 0.213234453985008 0.203049680329949 3 3 + 14708900 14709303 14709094.455 14708749 14709408 + gene protein_coding_gene FALSE TRUE AT3G42600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12120.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains domain Prokaryotic type I DNA topoisomerase (SSF56712) 0.122848557289236 1.26996761197583 0.230581973036688 1 0.147506091374316 1.49843693368352 0.122848557289236 0.0871384799344827
AT1G05400_at 3.42006367709824 3.24800761289669 3.31930707752835 3.59442321196682 2.6270316734984 3.04371525103621 2.65342297883552 3.08632465933597 3.56043716876022 3.47179921832458 2.95125207068521 2.81702360889612 3.20894961090746 3.45504993206013 2.97771289930713 2.96322352113684 3.29145724247167 2.99250133812906 3.17055212102426 0.254428000375250 0.259358667631114 0.259200896766156 0.257923034393401 0.263021651788504 0.258666405840985 0.265845623790083 0.262213270215427 0.253920498325219 0.255401261889353 0.256078714537004 0.255262590162426 0.253920498325219 0.256558557985958 0.253920498325219 0.257034229706132 0.254271100169307 0.256373566183741 0.255040689530752 1 1|0 +|/ 1584347 1585205 1584748.875 1584341 1585243 + gene protein_coding_gene FALSE TRUE AT1G05400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06810.1); similar to Os12g0162900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066226.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) -0.137309326643989 -1.26943152213497 0.230765951706710 1 0.146912031299437 6.36557490810063 -0.137309326643989 0.118175081120919
AT3G49130_at 1.95808543778416 2.2285189155087 2.96712491505599 2.96740669912512 1.79293945834075 2.09026085865746 1.83934550844937 2.34159316361529 2.27305593340599 2.36199514554353 1.96018530161938 1.80371864048991 1.99927459575386 2.09792078732193 2.72300772871328 2.01503902847251 2.55176958090728 2.04226920211909 2.09687532212816 0.231066075576506 0.230747625045833 0.229849800043859 0.241743977900066 0.228446529284550 0.243321496243159 0.233147756865628 0.229479735416415 0.232386511080805 0.241678478440418 0.237260406579589 0.236655571742353 0.231910998255191 0.247907422116661 0.236915954105526 0.234912923385366 0.247580086885819 0.237502920621552 0.239020407616496 3 3|0 +|/ 18221940 18222668 18222201.8 18221438 18222693 + gene protein_coding_gene FALSE TRUE AT3G49130.1 RNA binding similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06520.1); similar to SWAP/Surp; Ubiquitin [Medicago truncatula] (GB:ABE94283.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061) 0.133859933802104 1.26931198546567 0.230806991289335 1 0.146779593146364 4.46972115716738 0.133859933802104 0.111319632656184
AT4G03290_at 1.79423110939085 1.91646124241546 1.96149123828597 1.62351885762620 1.59472507785738 2.05012995014338 1.94446232222113 1.92380597939773 2.82358988952187 1.67192021907046 1.81200782701197 2.04972053260822 2.10367612411541 2.02919353965578 2.01033625230618 1.92927546724701 1.94788838151335 1.97816518316263 1.96215874889530 0.227462723080328 0.229008401098606 0.223902366042408 0.227703062961298 0.221830677669469 0.229151174052047 0.231821529595253 0.227436589827452 0.226553840271450 0.229001838617514 0.222482960557371 0.228311185995291 0.233062990357539 0.224015052441110 0.220141230645016 0.225363394642817 0.220141230645016 0.227213413214284 0.224537272832712 4 4 + 1442824 1443250 1442964.545 1442634 1443499 + gene protein_coding_gene FALSE TRUE AT4G03290.1 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G05990.1); similar to calcium-binding protein [Lotus japonicus] (GB:CAB63264.3); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.128648627377348 -1.26909118313979 0.2308828131862 1 0.146534983467399 3.91864782180815 -0.128648627377348 0.100459062242235
AT3G12710_at 2.9288075523162 2.69192217228594 1.7464107260415 1.2422274629701 1.28952747269376 1.41355891862520 2.17333352721386 2.25677110198459 2.55473168753644 2.06963936768360 3.51460947763546 4.63731647906515 3.05740574354587 3.63938265445909 4.72284636409196 3.23944583507434 2.28644272581034 3.9841870826223 3.78170633144310 0.242871883433933 0.241726100228413 0.247085899503499 0.249476568055658 0.239496328707618 0.245421216776654 0.238449699011935 0.233411319875229 0.234369929134644 0.242554707953464 0.237636093836326 0.251933489596136 0.234999892536048 0.237418931097346 0.246218477959085 0.236147367596119 0.242884057042894 0.237388448651628 0.245672102740231 3 3|0 -|/ 4040615 4041460 4040879.2 4040331 4041989 - gene protein_coding_gene FALSE TRUE AT3G12710.1 methyladenine glycosylase family protein similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT5G44680.1); similar to Methyladenine glycosylase [Medicago truncatula] (GB:ABE81339.1); contains InterPro domain Methyladenine glycosylase; (InterPro:IPR005019); contains InterPro domain DNA glycosylase; (InterPro:IPR011257) -0.128299346816913 -1.26858787754573 0.231055720175637 1 0.145977525122922 5.18643503718762 -0.128299346816913 0.09981235463246
AT1G31600_at 6.7676371288094 6.35446192699206 6.52188285163392 6.07536514002927 7.24577808789197 6.30745723938895 6.86856405803217 6.25335879527559 5.79026238012568 6.3287743361813 5.9279611732664 5.84812976746428 5.51068534663733 6.10671032905136 5.48069623626262 6.48982467369976 6.18975569754158 5.82810633236124 6.77032741496642 0.237082405122429 0.227401988149435 0.229207875769372 0.230621651686653 0.220656610150554 0.235430000576295 0.226681709854622 0.222652878141037 0.240264024475913 0.227648897953617 0.226145434790847 0.227165745544887 0.227625831413418 0.220656610150554 0.228231649447446 0.220656610150554 0.232903632506350 0.256204099604401 0.230136140491226 1 1 - 11313693 11314202 11313972.222 11312942 11316454 - gene protein_coding_gene FALSE TRUE AT1G31600.1|AT1G31600.2|AT1G31600.3 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02485.1); similar to OSJNBa0041A02.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41869.2); similar to 2-Oxoglutarate-and iron-dependent dioxygenase-related proteins (ISS) [Ostreococcus tauri] (GB:CAL55675.1); similar to Os04g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053775.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02485.1); similar to OSJNBa0041A02.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41869.2); similar to 2-Oxoglutarate-and iron-dependent dioxygenase-related proteins (ISS) [Ostreococcus tauri] (GB:CAL55675.1); similar to Os04g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053775.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.198552831715085 -1.26850426736796 0.231084454020028 1 0.145884934421052 12.6589073559867 -0.198552831715085 0.220874660787038
AT4G27670_at 1.55732955029669 1.04403519362965 1.11767923121298 1.07378226574622 1.13572231629896 1.49611034333862 1.3029419688442 1.23671249170594 1.70678329719101 1.76404165711647 1.83776779635175 1.5280049348063 1.04729886148317 1.55630621063654 1.47277683235339 1.25293861731548 1.62300560502855 1.6754043931281 1.58544666956138 0.205129533613760 0.209317524589983 0.204853562157881 0.207155084535528 0.203375550508257 0.203452474481474 0.206744768557056 0.210231513389470 0.203291324432258 0.208465724547281 0.214556044392412 0.208192888078667 0.205361635922445 0.203291324432258 0.208587661581235 0.203972273289831 0.211735786390636 0.2083321809011 0.203907981220616 4 4|0 -|/ 13819062 13819769 13819303 13818876 13819977 - gene protein_coding_gene FALSE TRUE AT4G27670.1 HSP21 (HEAT SHOCK PROTEIN 21) chloroplast located small heat shock protein. Identical to Small heat shock protein, chloroplast precursor (HSP21) [Arabidopsis Thaliana] (GB:P31170); similar to 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) [Arabidopsis thaliana] (TAIR:AT5G51440.1); similar to heat shock protein 22 [Metarhizium anisopliae] (GB:ABD49720.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -0.132833615102484 -1.26847816490825 0.231093425100856 1 0.145856029211658 2.83784506063959 -0.132833615102484 0.109403389281701
AT3G43290_at 2.1127141838332 2.21413442374970 2.60564502792429 2.67591411909984 1.91299992621872 2.67423313469712 2.75945416822135 2.744497444948 2.47000226196082 2.57295921909294 2.95552943503424 2.99336471586396 2.8820687436593 2.82929054641038 2.95419264187529 2.82529296362863 2.85152088172926 2.54433181172216 2.67742112245743 0.248591669998218 0.24859259303178 0.258583286255454 0.253496698218663 0.257870001424105 0.248648572113878 0.247390268879758 0.243154817505074 0.247635695075732 0.254083535229735 0.245391469250695 0.250176442369898 0.245508839804198 0.250003075870236 0.243154817505074 0.246170594140092 0.252512591074643 0.249789487162332 0.255663463148670 3 3|0 +|/ 15241567 15242062 15241810.556 15241556 15242103 + gene protein_coding_gene FALSE TRUE AT3G43290.1 unknown protein 0.145243048225135 1.26823557099488 0.231176815036202 1 0.145587407314519 5.17640397125026 0.145243048225135 0.133479285829171
AT4G31240_at 4.25367417524403 4.66174816251749 4.81297255792387 4.19900737029273 5.59954279637975 4.72138335390558 3.70569682136429 3.10182863427763 3.23511603394179 2.82808407468062 2.68042950027353 2.0767442128849 1.95652779606520 2.65885228832282 2.34935242231464 2.59902782238403 2.64969031191559 2.79921322681739 2.85384363897662 0.254772389619063 0.250440887968413 0.254632467376601 0.250772981666941 0.249948992547574 0.268218275356967 0.249948992547574 0.251540200130383 0.253747145354253 0.249948992547574 0.255505009178105 0.252064433087672 0.256645587347299 0.249948992547574 0.249963914449196 0.249948992547574 0.257386965197492 0.260328781136277 0.251917383057908 4 4 - 15176669 15177174 15176981.636 15176461 15178774 - gene protein_coding_gene FALSE TRUE AT4G31240.1|AT4G31240.2 electron carrier similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60420.1); similar to Os04g0608600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053815.1); similar to protein disulfide isomerase (PDI)-like protein 3 [Cucumis melo] (GB:AAU04767.1); similar to OSJNBa0060N03.13 [Oryza sativa (japonica cultivar-group)] (GB:CAE03648.2); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain C1-like; (InterPro:IPR011424) 0.20068567651527 1.26788673619257 0.231296767309630 1 0.145201210863587 7.10377054073247 0.20068567651527 0.224257640394287
AT3G13772_at 9.30464055805822 9.58070559939274 9.55170694855008 9.71413387993766 9.7131005101767 9.47329483803154 9.09762664010485 9.31516466303682 8.87587531917396 8.5934130346803 8.48054568384756 8.67285106287756 9.04750518033127 8.61723455864565 8.53130694087956 8.74156194193132 8.8749564568981 8.71019767707976 8.80936006061104 0.160072569458184 0.161681754653972 0.165108866104326 0.164226694160751 0.165954596432368 0.162131174740822 0.171425610479575 0.160115667761709 0.173434511736602 0.167437024114497 0.165504935327044 0.16390401041778 0.160161078700000 0.168773333687503 0.168494023372443 0.166887457654133 0.16170786336314 0.172870598260339 0.164118540290691 3 3 - 4521749 4522235 4521925.182 4521539 4524401 - gene protein_coding_gene FALSE TRUE AT3G13772.1 endomembrane protein 70, putative similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT1G55130.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10383.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54580.1); similar to Nonaspanin (TM9SF) [Medicago truncatula] (GB:ABE93901.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) 0.119247572674375 1.26761239023111 0.231391140899562 1 0.144897535156346 18.2033314093110 0.119247572674375 0.0788157070349906
AT1G52700_at 2.22145536528277 1.99038978629948 1.91839386107295 1.77194154566252 2.15605090028969 1.57878673636579 2.28068113644743 2.26806083453199 1.95915323338981 2.39976286745876 3.74219833615939 3.34305693027588 2.51213032783591 2.82518946316034 3.51700596269251 3.05794605201200 2.38920491115880 2.97124058447065 2.97397701617708 0.207482079834675 0.207197884252598 0.216049386645819 0.211811793555135 0.21743645063389 0.214329180326547 0.206208421899277 0.214410278600016 0.214747161145977 0.211153520685424 0.212720043422318 0.207784523592922 0.211038859518037 0.212987730500706 0.207717583290794 0.212918063227682 0.211744463347712 0.220851400550604 0.208994058346602 1 1|0 -|/ 19635073 19636704 19635700.143 19634794 19637108 - gene protein_coding_gene FALSE TRUE AT1G52700.1 phospholipase/carboxylesterase family protein similar to phospholipase/carboxylesterase family protein [Arabidopsis thaliana] (TAIR:AT3G15650.1); similar to Phospholipase/Carboxylesterase [Medicago truncatula] (GB:ABE78991.1); contains InterPro domain Phospholipase/Carboxylesterase; (InterPro:IPR003140) 0.133297672751391 1.26746958591630 0.231440277202857 1 0.144739482698058 4.76774215906703 0.133297672751391 0.110569982183799
AT2G39200_at 2.48984601918565 2.81163813252176 1.2580268375818 1.27499779236939 3.65546467423652 3.51172616377215 0.638392634260221 0.481648342406717 3.28337596809858 1.77706311302976 1.46978884377179 1.97654899679134 1.38082494537112 1.2395429754137 2.09126965497909 1.18961039284707 1.04397630901555 1.63516512914104 1.22013176395026 0.259814092835873 0.256263907458371 0.256866188239553 0.257674237366815 0.287301362601017 0.287103271722614 0.251202584250849 0.254399179048533 0.250773326905108 0.249967669627615 0.249967669627615 0.249967669627615 0.254570148911884 0.257377279038192 0.256562723605832 0.250411267685409 0.267627595378577 0.259114191083425 0.251484446354271 2 2 - 16363422 16364247 16363653.273 16363232 16366891 - gene protein_coding_gene FALSE TRUE AT2G39200.1 MLO12 (MILDEW RESISTANCE LOCUS O 12); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in root tips and cotyledon vascular system, in floral organs (anthers and stigma), and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 12 (AtMlo12) (AtMlo18) (MLO12) [Arabidopsis Thaliana] (GB:O80961;GB:Q94KB3); similar to MLO2 (MILDEW RESISTANCE LOCUS O 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G11310.1); similar to MLO6 (MILDEW RESISTANCE LOCUS O 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G61560.1); similar to MLO1 [Lotus corniculatus var. japonicus] (GB:AAX77015.1); similar to MLO1 [Capsicum annuum] (GB:AAX31277.1); similar to MLO1 [Brassica rapa] (GB:AAX77014.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.114744937893257 1.26658993412897 0.231743135629461 1 0.143766188164647 3.81364983501304 0.114744937893257 0.066815173087415
AT1G60680_at 2.00051542789646 1.77708130365217 2.48796403010297 1.84208824018633 2.45692706906387 2.0427569653071 2.21543721953760 1.37807568549300 1.94175729759886 2.21941880894508 2.47639767602719 1.87941601226402 2.07189396513233 2.22539181349664 2.26760829622920 1.80744369062294 2.25412955756055 1.86048693831056 2.13968639847651 0.236506092839364 0.237365923798831 0.253596018159798 0.242263050302483 0.240564881808207 0.250110181395582 0.240569491579322 0.233877984110242 0.249243677769597 0.237624669040877 0.233877984110242 0.233877984110242 0.239194399074274 0.233877984110242 0.233877984110242 0.239501600649228 0.23977665208054 0.243481497088707 0.247442208699753 1 1|0 -|/ 22351493 22352133 22351712.333 22351287 22352962 - gene protein_coding_gene FALSE TRUE AT1G60680.1 AGD2 (ARF-GAP DOMAIN 2); aldo-keto reductase A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD2 belongs to the class 1, together with AGD1, AGD3, and AGD4. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.184857579526102 1.26614771467312 0.231895510272143 1 0.143277076780529 4.12792249034439 0.184857579526102 0.200309525526132
AT3G11160_at 1.76756631322676 1.33491612969242 2.35848080933424 2.30214452767895 1.56135753101265 1.86809552362681 1.95046986730478 1.84957345628804 2.26281694915657 2.28017950979418 2.30855364234306 1.93229855505131 2.12721911173803 2.21632085693385 2.37690719000905 1.96132329674105 2.20929733458565 2.43450582683195 2.18267605597221 0.225398691830161 0.22852539675672 0.225317500045196 0.230302684877919 0.231594392674737 0.229008282765382 0.225317500045196 0.225317500045196 0.231481340837679 0.225317500045196 0.225317500045196 0.240945005483801 0.225991133043445 0.228736381141760 0.252147392640314 0.225317500045196 0.226228042762150 0.227059167729390 0.230282739772792 3 3|0 -|/ 3496243 3497141 3496821.5 3496073 3497169 - gene protein_coding_gene FALSE TRUE AT3G11160.1 unknown protein 0.125400272378375 1.26610801831601 0.231909192335906 1 0.143233177145382 4.09292255231403 0.125400272378375 0.0939334976115473
AT4G16790_at 4.30598094326714 4.7749918523048 4.99978433801393 5.68056764497056 5.50314393610178 5.37564645451611 6.33099632337999 6.36442209090815 4.10740515745623 4.72333219558629 4.79108503699626 4.85523562009245 4.45866009865598 4.20778828245833 4.50899407303146 4.9635119566809 5.04939167337035 4.42117909014073 4.06950916205227 0.222577887020316 0.215187591822611 0.217478369073053 0.223840661585404 0.221013970707929 0.223180948664238 0.234657710414313 0.219635626343638 0.228085963517969 0.226190109300958 0.223945359185709 0.221633915899822 0.220428066714941 0.229707770886747 0.222908296300496 0.221549438969274 0.222752313338676 0.220756313426057 0.222947169907142 4 4 - 9451767 9452284 9452109.364 9451604 9453273 - gene protein_coding_gene FALSE TRUE AT4G16790.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60380.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96200.1); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816) 0.151293174082812 1.26600074039611 0.231946170875553 1 0.143114544996007 9.8954731482461 0.151293174082812 0.144871669019855
AT4G40060_at 7.79541142765739 7.67617674170023 7.67900451931465 7.81415226016651 8.57320417860866 8.23542105347164 8.24946849302582 8.3658037346552 8.35315814532547 8.17608769008795 7.99869218577255 8.0723946600497 8.14991059160178 8.0296834089436 8.22872824468904 8.21255452217092 7.82115362550767 8.15378520920996 8.57512728320027 0.172753633809474 0.169864271995058 0.183762427580331 0.191345906553471 0.170972851639254 0.188047931104807 0.173538162612976 0.164645299363311 0.198229414809582 0.170599481072579 0.179096089080909 0.168746068884555 0.173129711608958 0.180809376818679 0.180769335319608 0.164961438349822 0.184439590159458 0.186619674998726 0.177266793007901 4 0|4 /|- 18571680 18572008 18571862.4 18571353 18573078 - gene protein_coding_gene FALSE TRUE AT4G40060.1 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 13); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-16 (Homeodomain transcription factor ATHB-16) (HD-ZIP protein ATHB-16) (ATHB-16) [Arabidopsis Thaliana] (GB:Q940J1;GB:Q9SMQ1;GB:Q9SWZ8); similar to ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6), transcription factor [Arabidopsis thaliana] (TAIR:AT2G22430.1); similar to homeodomain-leucine zipper protein [Brassica napus] (GB:AAR04932.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.115515581623683 -1.26575409716006 0.232031206561409 1 0.142841824720976 16.2743238905072 -0.115515581623683 0.0692463376748014
AT2G35780_at 8.29461351846629 8.62881202493602 8.21068247491436 8.1982069509901 8.51591508744163 8.2534767307064 8.37559456323976 8.3173829524162 8.21940137686408 8.65606998473631 8.96363319708072 9.18590656059756 8.58388380753362 8.72286366551225 9.25172024611215 8.6915256550209 8.51347083995019 8.60646453644834 8.53676653884519 0.154809533612643 0.152296106357414 0.140813528907646 0.150512109389354 0.157066922926972 0.161978812930102 0.144654919562301 0.145080221958491 0.167828270427042 0.153640584597510 0.150056140823882 0.149499314299433 0.146964951018378 0.148845409890411 0.153477817332003 0.141278999548728 0.165171450003624 0.159366447918006 0.158555670890353 2 0|2 /|- 15044818 15045510 15045127.8 15044741 15047206 - gene protein_coding_gene FALSE TRUE AT2G35780.1 SCPL26 (serine carboxypeptidase-like 26); serine carboxypeptidase similar to SCPL27 (serine carboxypeptidase-like 27), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G07990.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os01g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042076.1); similar to Os01g0833500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044713.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.11732857148267 1.26570549303391 0.232047966884478 1 0.142788086315284 16.9921753030624 0.11732857148267 0.074253713714645
AT4G10100_at 10.1280389328636 10.1879348461112 10.0670768462982 10.0881797415575 10.0148825135025 10.0903614744337 9.70097822481455 9.93482596876842 9.8670838137037 9.8009800745865 9.56676997055317 9.57529620922051 9.51351737612048 9.58402721873203 9.34220340053112 9.83085058804734 9.64101598610004 9.3603271043412 9.86646145449089 0.0987771943353933 0.0973511497396901 0.0967544745479546 0.0967700480540978 0.098320485994755 0.101313065137798 0.0964170441606095 0.0972130967744247 0.104927939755638 0.103872188087371 0.101197038959406 0.0973121657174388 0.102994063565342 0.097270641251979 0.107973817475083 0.097642701473782 0.0990206644439545 0.110129139482826 0.097249038086502 4 4 + 6309118 6309353 6309234.273 6308679 6309542 + gene protein_coding_gene FALSE TRUE AT4G10100.1|AT4G10100.2|AT4G10100.3 CNX7/SIR5; catalytic|CNX7/SIR5 molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling. similar to VP15 [Zea mays] (GB:ABB96257.1); contains InterPro domain ThiamineS; (InterPro:IPR003749); contains InterPro domain Molybdopterin converting factor, subunit 1; (InterPro:IPR010034) -0.107955074206374 -1.26566645215856 0.232061430190580 1 0.142744922450337 19.7248311998601 -0.107955074206374 0.0439213601027651
AT1G03180_at 1.70406161118416 2.21836615988469 1.53039761805339 2.18830908943913 1.61088143025139 2.06257060011952 2.22334154017679 1.86424714627542 2.26624258033018 1.89443964278039 2.09226423103735 1.69628438801782 2.13643556288714 2.11253482885796 1.47873026449610 1.83434068084249 1.62266638681065 2.36638701610571 2.14442964347175 0.197617642370005 0.193475817815507 0.188052499718831 0.189985918426327 0.193642476307458 0.190281914587363 0.186710319809722 0.198466997848733 0.192469894163951 0.191122614810840 0.188949105794319 0.198880217546219 0.194346038074519 0.186975026418802 0.201166172214692 0.189785797642309 0.191056881654041 0.195095283504961 0.195600611586883 1 1|0 +|/ 774332 774838 774552 773411 775344 + gene protein_coding_gene FALSE TRUE AT1G03180.1|AT1G03180.2 similar to Os05g0251400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055029.1) -0.169356482779972 -1.26550783125906 0.232116137365239 1 0.142569559964706 3.93485158712773 -0.169356482779972 0.175659312138844
AT1G68250_at 1.25023030367504 1.39368036598594 1.27289694380736 1.24788789557404 1.31576909125452 1.45592283493999 1.68252738138905 1.45044502623281 1.34167700505215 1.64079129461500 1.37133183135137 1.4954477443213 1.76373442315363 1.48724964130981 1.29683129155911 1.12293297147068 1.17433733827355 1.25329376112542 1.42817355980265 0.172664579987355 0.167821688568578 0.179569102344137 0.167821688568578 0.167821688568578 0.176186961837001 0.175962992247937 0.17679040245907 0.170145295693161 0.182964633209071 0.171501619942905 0.174192130443033 0.172845441129860 0.168342405240471 0.175743847230852 0.173073509952253 0.176621660225476 0.179508137791336 0.175971523298358 1 1 - 25583170 25583456 25583323.545 25583036 25583857 - gene protein_coding_gene FALSE TRUE AT1G68250.1 unknown protein -0.110335327881361 -1.26490470401403 0.232324246938772 1 0.141902920831357 2.80409939459595 -0.110335327881361 0.0532571796709207
AT2G21510_at 0.176991368536606 0.0888114003265987 0.432999010356263 0.402813248699023 0.420716151592923 0.143723140994634 0.61803830892061 0.252287557949230 -0.0805064583994806 0.420092969493963 0.103092883663401 0.636027402399585 0.640697259085988 -0.0245587017220864 0.308058688323317 0.371859674525218 0.459882876117071 0.0413499289867331 0.0905008501700406 0.198155743511615 0.199731990760726 0.198155743511615 0.200258427180838 0.202449361819639 0.20333023649929 0.199042324295093 0.199685915710284 0.210299383809384 0.202395864301893 0.198155743511615 0.208217815893027 0.209375766118442 0.209757146737258 0.204171672786093 0.202528421594551 0.199133991444055 0.205183907284503 0.200942568898993 2 2|0 -|/ 9217923 9218882 9218325.625 9217735 9220138 - gene protein_coding_gene FALSE TRUE AT2G21510.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G39150.1); similar to Os09g0493800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063548.1); similar to DnaJ-like protein [Brassica juncea] (GB:AAW50121.1); similar to Os05g0543700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056206.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.119859763322506 1.26489981021479 0.232325936166679 1 0.141897512633076 0.547254376010608 0.119859763322506 0.0810194599133016
AT3G13200_at 9.1036395346739 9.42753000575885 9.13449072430098 9.15290426086356 9.5592752707986 9.26618946070214 8.89010814396522 9.15989421758425 8.99211051536299 8.98948528180795 9.42828230190935 9.20544549725988 9.15592278769734 9.44201606201502 9.05421327665074 9.21519102965001 8.51030104194966 8.90798410297311 9.02332586854908 0.158845042656670 0.152310293551892 0.152994232585900 0.148400309881662 0.153405642283397 0.162838917315489 0.14947443081732 0.149780756149628 0.160234054216978 0.152947075528029 0.155277913995884 0.154404591511726 0.153423375510195 0.166498948608358 0.155955856548612 0.154268072571442 0.169464705601783 0.161323090371994 0.165382663923857 3 3|0 +|/ 4242349 4243945 4243412.7 4242132 4244152 + gene protein_coding_gene FALSE TRUE AT3G13200.1 Cwf15 / Cwc15 cell cycle control family protein similar to Cwf15/Cwc15 cell cycle control protein [Medicago truncatula] (GB:ABE80889.1); contains InterPro domain Cwf15/Cwc15 cell cycle control protein; (InterPro:IPR006973) 0.123100455471951 1.26486875855029 0.232336654725162 1 0.141863197405544 18.2700339862075 0.123100455471951 0.0889049557118887
AT4G00570_at 8.03857788053989 7.84509379704371 7.42959150223803 7.24619632946015 7.24955213378591 7.09377819863442 7.22768953639879 7.25464848298275 7.46787700505103 7.25450917764414 7.73182075312124 7.89103537956753 7.18754232308871 7.62303864252732 8.0269031159664 7.22879092563 7.01995030859643 7.06190677255721 7.34419253170033 0.193242943437435 0.188532301330888 0.201003235833051 0.208119999226541 0.195661065060769 0.210492319265887 0.194834490118461 0.195528696001713 0.235436164037069 0.221398154758945 0.188532301330888 0.192783341996132 0.2020512802786 0.211252252912535 0.191072538963618 0.189191776985719 0.195288682314012 0.200615451268162 0.207879120677811 4 4|0 -|/ 242844 244038 243407.333 242515 246771 - gene protein_coding_gene FALSE TRUE AT4G00570.1 malate oxidoreductase, putative similar to malate oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT2G13560.1); similar to putative mitochondrial NAD+-dependent malic enzyme protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13628.1); similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37225); similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47850.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) -0.110437796855820 -1.26484149406216 0.232346066338856 1 0.141833067892497 14.8365908655173 -0.110437796855820 0.053636389423704
AT4G18360_at 1.09689013772139 1.19158023054415 0.855791549511476 1.13392943446140 0.813672725400923 1.10611880178812 1.18584581256923 1.14435343350441 1.12515004422174 0.843104189264515 1.14522530641202 0.887502495663914 1.09444857637282 1.24955538534951 1.02286399542842 0.894225235681736 1.27788854671759 1.15903011376386 1.47253030444733 0.200123509034312 0.200002987785598 0.202524820689856 0.198725372850629 0.197828875688258 0.202885337078748 0.197828875688258 0.202580336819848 0.212000955991401 0.199436866521691 0.206021039991289 0.206409367562343 0.209972223049800 0.207961178847447 0.213640182403877 0.2076174848189 0.201769167404375 0.200796313268213 0.202607637756209 4 4 - 10146170 10147409 10146760.909 10145930 10148693 - gene protein_coding_gene FALSE TRUE AT4G18360.1|AT4G18360.2 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.2); similar to glycolate oxidase [Brassica napus] (GB:AAV28535.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase; (InterPro:IPR000262); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase, active site; (InterPro:IPR008259)|similar to (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G14420.2); similar to Peroxisomal (S)-2-hydroxy-acid oxidase (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) (GB:P05414); similar to Chain , Three-Dimensional Structure Of Glycolate Oxidase With Bound Active-Site Inhibitors (GB:1AL8); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase; (InterPro:IPR000262); contains InterPro domain FMN-dependent alpha-hydroxy acid dehydrogenase, active site; (InterPro:IPR008259) -0.116437499090888 -1.26465535533156 0.232410329085993 1 0.141627381747934 2.18515808380510 -0.116437499090888 0.0720982411932988
AT3G59100_at 1.97313012009618 2.00425395153966 1.88147585579999 1.82036555300543 1.48741816562418 1.50439277982343 1.88785135341625 1.66978784548877 1.92347745898433 2.42874561177222 2.46165355367572 2.47558321028870 1.34381153911208 1.81565656714711 2.49570148614289 2.18687756599220 1.83030363848601 2.57307348850544 2.10150258884704 0.218483284671168 0.215915177593901 0.213298224783961 0.218807186546732 0.220830412940597 0.214273316074926 0.216064643985159 0.222221135555807 0.224903354431428 0.222591993752348 0.217048109241052 0.212952030447429 0.221431070855149 0.221600619447531 0.225649704683597 0.216061527284579 0.219500596545720 0.212952030447429 0.214074127221719 3 3|0 +|/ 21863992 21864810 21864441.2 21854384 21864837 + gene protein_coding_gene FALSE TRUE AT3G59100.1 ATGSL11 (GLUCAN SYNTHASE-LIKE 11); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a protein similar to callose synthase similar to ATGSL07 (GLUCAN SYNTHASE-LIKE 7), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G06490.1); similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to putative beta-1,3-glucan synthase [Nicotiana alata] (GB:AAK49452.2); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.106875992218860 -1.26442420592159 0.232490151419356 1 0.141371988564765 3.92812171195089 -0.106875992218860 0.0396680372091597
AT4G19850_at 1.64962817169369 1.87487954634353 1.74256163423865 1.85907293974337 1.42102636588610 2.09554316871180 1.64909904672747 1.64893857920279 2.43317520590944 2.38983013488885 2.55660919989269 2.20431304992437 2.03333179531136 1.65117671909692 2.12693546494029 1.97496112373435 1.96876527012894 1.60691153729688 2.28532776241373 0.170512929918592 0.172264204203937 0.171481869932923 0.177686290667525 0.168273117990657 0.169809917418738 0.168575504082559 0.17436464533665 0.175482478526555 0.171017310573956 0.183672350998667 0.172847881946265 0.170395980940907 0.176742132122511 0.172161389963111 0.171637533144592 0.169525051205745 0.173821670188051 0.174138530093321 4 4 + 10776956 10777491 10777298 10776935 10777519 + gene protein_coding_gene FALSE TRUE AT4G19850.1 ATPP2-A2 (Arabidopsis thaliana phloem protein 2-A2) encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family. similar to ATPP2-A4 (Phloem protein 2-A4) [Arabidopsis thaliana] (TAIR:AT1G33920.1); similar to Os01g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042077.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08190.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.140077078271752 -1.26390731523136 0.232668728560847 1 0.140801006631827 3.93500362545746 -0.140077078271752 0.12470579027364
AT3G06710_at 0.927095094359968 0.85363288103993 0.651224027092111 1.15884751198852 1.60950309894695 1.00619335870568 1.39897888368462 0.740790633970208 1.00867914270435 0.982312677674724 0.960415872160215 1.32278665846235 1.74335834967404 1.02505708434188 0.894725672576871 1.52721918441607 1.24492481538929 1.29231646205417 1.11824701609432 0.206682203646225 0.203083635819328 0.209244882903615 0.206501022006826 0.204521051367452 0.203707247186857 0.203103947663585 0.208255339034207 0.217446828026649 0.206663122291905 0.208892314379108 0.203100850119363 0.215505050934414 0.209492319541422 0.212946003379813 0.202469128033957 0.213870612330146 0.214304932921240 0.201594104387651 3 3 + 2119109 2119830 2119524.091 2118214 2120065 + gene protein_coding_gene FALSE TRUE AT3G06710.1 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G32670.1); contains domain SSM4 PROTEIN (PTHR13145) 0.170627596406431 1.26343099389676 0.232833388037805 1 0.140274988962486 2.18716491516124 0.170627596406431 0.178193599438663
AT4G28650_at 1.49993499534994 1.18174815785406 1.21923039711554 1.35592694344841 0.987676338438409 1.23054612618553 1.65516351061395 1.38992985108436 1.86251751058784 1.23842277750844 1.46639885455828 1.32365950577451 1.39085315504515 1.62149979841503 1.66634428302426 1.40775319835064 1.9142236439228 1.15068242043819 1.40837822668576 0.228212242187566 0.215405233484311 0.214287125680415 0.214612615012285 0.215919274534692 0.217515843163519 0.215952515754491 0.220758978711297 0.219228078743951 0.222466062824044 0.224308500824196 0.216528107986675 0.216534515723037 0.218935107303565 0.21724571404492 0.214954554464447 0.220505222885081 0.219155318885309 0.217512731586458 4 4|0 -|/ 14144165 14144792 14144519.6 14143990 14147543 - gene protein_coding_gene FALSE TRUE AT4G28650.1 leucine-rich repeat transmembrane protein kinase, putative similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to CLAVATA1 receptor kinase (CLV1) [Arabidopsis thaliana] (TAIR:AT1G08590.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G61480.1); similar to putative receptor-like protein kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:AAP68887.1); similar to Protein kinase; Actin-binding, actinin-type [Medicago truncatula] (GB:ABE92015.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17351.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.121889245790756 -1.26323550813716 0.232900992806506 1 0.140059148958242 2.81291105452884 -0.121889245790756 0.0863997722670072
AT4G33200_at 6.59282468571504 6.50710859620372 6.9803550491349 6.62954712591052 7.25322290168669 7.02471711856955 6.85370765065293 6.46313916190053 6.15858269667442 6.41797722868054 6.29811374623107 6.32102716097377 6.55600636287657 6.11329809800832 6.41321698978226 6.62731889383923 5.95507809665237 6.34380184043532 6.7446617429586 0.229218086959972 0.229253101156908 0.221235226453857 0.216535483248923 0.222634413118573 0.226013428656171 0.220928853171909 0.236685661336513 0.228827291364175 0.230728995137665 0.221319564422750 0.220501905410597 0.218562772680793 0.229444388886560 0.227290178356606 0.219714577790324 0.24845417925838 0.226222518320678 0.222018586397809 4 4|0 -|/ 16002782 16004633 16003583.111 16002535 16014971 - gene protein_coding_gene FALSE TRUE AT4G33200.1 XI-I (Myosin-like protein XI-I); motor/ protein binding member of Myosin-like proteins similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to myosin class 11-1 [Adiantum capillus-veneris] (GB:BAD80748.1); similar to putative myosin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:AAM22736.1); similar to putative myosin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD16972.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.127920475518019 1.26313593527049 0.232935434166215 1 0.139949217713156 13.1725227219073 0.127920475518019 0.100188350871152
AT1G11840_at 9.80381747750789 9.97784650847794 10.0189067645743 9.85596917894427 10.1044255227758 9.77673305477317 10.7883438934340 10.8869466688966 9.60277879143303 10.4773339200073 10.5366120618785 10.6054313044622 10.6168888321170 10.6077006603069 10.8599404096888 10.5018289525061 10.5017150361114 10.8289065062217 9.84374535392003 0.098369628987302 0.0996779938020093 0.103304015305690 0.107015730453541 0.0999757557483923 0.111088224955261 0.106366991158703 0.102819960861227 0.111916877816468 0.0996667093828561 0.102510946258147 0.0972600461202722 0.101325797655632 0.100882568326521 0.100718889444870 0.0962505901211135 0.101846399990956 0.099232326888269 0.106709575887522 1 1|0 +|/ 3996480 3997358 3996914 3995171 3997852 + gene protein_coding_gene FALSE TRUE AT1G11840.1|AT1G11840.2|AT1G11840.3|AT1G11840.4|AT1G11840.5 ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D-lactoylglutathione methylglyoxal lyase) (GB:Q39366); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.116264304239613 1.26247390915216 0.233164527955986 1 0.139218481636076 20.4551222964389 0.116264304239613 0.0721742979536266
AT4G23870_at 4.19227242898567 4.65762961797032 4.27610684987378 4.59669277111501 6.13121223496373 5.23705947291234 4.88406828461912 4.45797023715982 4.13331686742461 4.33784231170347 4.19910885231348 4.52040692831099 4.24503423014642 4.40425166999499 3.72347510705649 3.63955624215815 4.20291542668787 4.30370382622909 4.43579434007848 0.239577217348479 0.241226211643229 0.245851565862854 0.234545607310574 0.248478273019874 0.250392169706364 0.245997928079358 0.25080511626572 0.237546061497657 0.246102105139726 0.238747406364258 0.235285970649458 0.241445727545583 0.237211299189079 0.243775381763147 0.234529207327752 0.241354286162104 0.238294523834470 0.241265192957045 4 4 + 12414542 12414745 12414651 12414240 12415059 + gene protein_coding_gene FALSE TRUE AT4G23870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11020.1) 0.182385692829574 1.26212054990546 0.233286882406534 1 0.138828561603692 9.03268867474882 0.182385692829574 0.197343131088772
AT2G04440_at 1.35256631957239 2.03164740494474 2.0120237720614 2.36184113029742 1.36921811359801 1.95128749828165 1.60360811684157 2.04106031181863 1.90778478748801 2.36318846984893 1.70435386017277 1.95018805423804 1.50972431941530 1.46182232639005 1.20023728046862 1.64067861034787 1.38352807028821 2.15052378739558 2.14258055992913 0.258060225149405 0.244687246096051 0.241323882865908 0.262669403500142 0.241323882865908 0.246564862759455 0.243259133656735 0.24581759961762 0.252263660153480 0.248648008709014 0.241542214895657 0.241578490273233 0.249014197458462 0.253343371093782 0.243325678366209 0.24388406475851 0.252460415006332 0.241323882865908 0.241323882865908 2 2|0 +|/ 1541796 1542684 1542283.2 1541508 1542726 + gene protein_coding_gene FALSE TRUE AT2G04440.1 NUDIX/mutT hydrolase family protein similar to ATNUDT5 (Arabidopsis thaliana Nudix hydrolase homolog 5), hydrolase [Arabidopsis thaliana] (TAIR:AT2G04430.1); similar to Nudix hydrolase 5 (AtNUDT5) (GB:Q9SJC6); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) -0.17317357178359 -1.26209638167273 0.233295252817041 1 0.138801895658210 3.72189823893276 -0.17317357178359 0.182627407761795
AT2G27570_at 0.745572493780313 0.655314116176367 1.12424011170422 0.877222688851952 0.605401296935281 0.888397919762057 0.62339066187502 0.776491658158792 1.20569470640720 0.821330385291334 0.68225763334124 0.935868138492272 1.10501222144019 1.19625707530492 0.836730225354987 0.933693305564173 1.16575433145245 0.885246768339527 0.699897322997358 0.18373401455827 0.179510385098769 0.184908308267716 0.182638610574136 0.179510385098769 0.182583952939445 0.184128178433672 0.182256087979253 0.186184907355775 0.184947994927650 0.179510385098769 0.185953610346743 0.191260732025640 0.185690534734502 0.186687958822378 0.181103468837345 0.185453427583625 0.184742057897392 0.181672204794539 2 2|0 +|/ 11782640 11783125 11782908.667 11782406 11783382 + gene protein_coding_gene FALSE TRUE AT2G27570.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT3G45080.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.116125797997505 1.26199291377475 0.233331090572883 1 0.138687738847459 1.72529216872709 0.116125797997505 0.0719148192854757
AT1G74460_at 0.756897895900969 0.654760195056123 0.623691719563296 0.884612178443824 0.70698705562354 0.811186490201987 0.87207525397055 0.733112524861112 0.606009516533556 0.384606517557715 0.66342626909832 0.609880948272383 0.686142568343419 0.785965067005527 0.638619560401835 0.785724754676722 1.39510551210259 0.670702827015465 0.687831690226605 0.251186264492847 0.248705795320625 0.266851581585890 0.252368685604866 0.24471896295768 0.259059054309253 0.248949352690274 0.249505186884009 0.258638140743672 0.248238132023162 0.247110569455358 0.246682606817285 0.244273416783952 0.244209263900569 0.252392527044943 0.249208860078078 0.257378625207992 0.249611991664376 0.263256120689049 1 1 - 27991811 27992663 27992170.636 27991622 27993462 - gene protein_coding_gene FALSE TRUE AT1G74460.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G37690.1); similar to putative family II lipase EXL1 [Oryza sativa (japonica cultivar-group)] (GB:BAD37268.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.11118562855144 1.26196137443844 0.233342015611233 1 0.138652942637647 1.42487967077125 0.11118562855144 0.0570502615004036
AT4G08670_at 0.329742310288475 0.333639011524101 0.47518021102698 0.375253379940806 0.63826636401545 0.348343362979774 0.256755585715219 0.666688298235788 0.76078841042591 0.871804922569131 0.565009188426883 0.558026051429946 0.448570772749529 0.582595610104448 0.183575414315121 0.395155027442864 0.608632195667377 0.426605479729178 0.704208143862683 0.176548733748012 0.180506864820824 0.183496356870496 0.174890358068156 0.186707554702920 0.180459552804641 0.186422307154305 0.175328629731345 0.174838387067166 0.174165193339445 0.179669072643948 0.18115219907827 0.181451463515294 0.182122384891811 0.183492259534863 0.174146495283468 0.178833134826186 0.181090962876516 0.177340953351552 4 4 - 5536780 5538166 5537666 5536696 5538207 - gene protein_coding_gene FALSE TRUE AT4G08670.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G36150.1); similar to xylogen protein 1 [Zinnia elegans] (GB:BAD24657.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.122679040043108 -1.26187935421796 0.233370428866475 1 0.138562455639320 1.05296108701703 -0.122679040043108 0.0885966751944718
AT3G21640_at 6.66928745390534 7.25844183262427 6.89648417614395 6.87854115490282 6.6640990815441 6.35360317373207 5.77770465625634 5.8807684484835 5.32403572692984 5.62479494434437 5.99998760487445 5.49940474312751 5.59394186147919 5.59332433599505 5.71418363562635 5.67646167827714 5.63439212239485 5.20129757449327 5.98425183299983 0.225164957088084 0.224169251048446 0.222576097042968 0.221911465714709 0.228036256188028 0.229463089254687 0.221911465714709 0.223244986397157 0.239448514657137 0.225612252936945 0.221911465714709 0.221911465714709 0.221911465714709 0.227153812630233 0.229334973833894 0.222846059014073 0.239234904507464 0.233536067616620 0.226962434771995 3 3 - 7619042 7619568 7619330.455 7618937 7621484 - gene protein_coding_gene FALSE TRUE AT3G21640.1 TWD1 (TWISTED DWARF 1); FK506 binding / peptidyl-prolyl cis-trans isomerase encodes a 42 kDa FK506-binding protein (AtFKBP42) that possesses similarity to multidomain peptidyl-prolyl cis/trans isomerases (PPIases, EC 5.2.1.8), which are known to be components of mammalian steroid hormone receptor complexes. The protein appears to be localized to the plasma membrane by electron microscopy and binds to HSP90.1 and calmodulin in vitro. It also aggregates citrate synthase in vitro but does NOT show PPIase activity in vivo. Mutants are reduced in size and exhibit disoriented growth in all organs. Identical to 42 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (Protein TWISTED DWARF1) (Protein ULTRACURVATA2) (FKBP42) [Arabidopsis Thaliana] (GB:Q9LDC0;GB:Q8RWM0); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91481.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.135697329269416 1.26159173836537 0.233470086220783 1 0.138245183430748 12.1766087618448 0.135697329269416 0.116661780911041
AT3G13320_at 6.3551622768274 6.70299277416511 6.73393595056424 7.08240349984248 7.40422738338004 6.7106950630183 6.6018564809825 6.76219793254532 6.42897078426357 5.8373434454775 5.96743630580512 5.81692595312863 6.20324436188536 6.18858061004569 5.47302678437366 6.6909899292593 6.18339783448942 5.8168952742319 6.07189080002481 0.211285095506312 0.215703164014138 0.214548871877926 0.215223795326438 0.210102520372088 0.210144807100238 0.210455884568891 0.212322104369916 0.217443199448834 0.214031106541543 0.207371826341330 0.211284405161243 0.208526731072789 0.211117836080233 0.220444467929625 0.207371826341330 0.219587007414463 0.207516244727368 0.213473444624803 3 3|0 +|/ 4316673 4317784 4317331.556 4314536 4318358 + gene protein_coding_gene FALSE TRUE AT3G13320.1 CAX2 (CATION EXCHANGER 2); calcium:hydrogen antiporter low affinity calcium antiporter CAX2 Identical to Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger 2) (Ca(2+)/H(+) antiporter CAX2) (CAX2) [Arabidopsis Thaliana] (GB:Q39254;GB:Q944Q1;GB:Q9LTT6); similar to ATCAX6 (calcium exchanger 6), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT1G55720.1); similar to ATCAX5 (calcium exchanger 5), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT1G55730.2); similar to low affinity calcium antiporter CAX2 (GB:AAB05914.1); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium/proton exchanger superfamily; (InterPro:IPR004798) 0.153545114900804 1.26157218671703 0.233476862012864 1 0.138223617692711 12.8718324909528 0.153545114900804 0.149781000764090
AT1G06310_at 2.07254040619275 1.62629666570761 1.84171477427255 1.79739941774250 1.81408192936188 1.89000403891037 1.53447614994636 1.52975404145446 1.35009833236815 1.92142772549552 1.88134081015526 1.82291445125586 1.92750103947379 1.85365059620231 1.62170426791029 1.96379601192191 1.95086631576476 1.83273361991739 2.02237997107333 0.221813378448535 0.216931628304931 0.215511605717537 0.218828701193574 0.219497376519934 0.215923746544807 0.221664766586425 0.210824482130585 0.231378474710831 0.218529974372811 0.212025625511159 0.215453009078595 0.228128981178417 0.214782731808587 0.218241937228562 0.211605079822119 0.218628953743212 0.219222433748497 0.212096727424596 1 0|1 /|+ 1929268 1930145 1929793.833 1926790 1930257 + gene protein_coding_gene FALSE TRUE AT1G06310.1 ACX6 (ACYL-COA OXIDASE 6); acyl-CoA oxidase Encodes a putative acyl-CoA oxidase. However, no transcripts have been detected for this gene and no altered phenotypes have been detected in plants mutant for this gene. This suggests that ACX6 does not significantly contribute to seedling beta-oxidation of fatty acids or indole-3-butyric acid in vivo. Identical to Putative acyl-coenzyme A oxidase 3.2, peroxisomal precursor (EC 1.3.3.6) (ACX3.2) [Arabidopsis Thaliana] (GB:Q9LMI7); similar to ACX3 (ACYL-COA OXIDASE 3), acyl-CoA oxidase [Arabidopsis thaliana] (TAIR:AT1G06290.1); similar to hypothetical protein DDBDRAFT_0188084 [Dictyostelium discoideum AX4] (GB:XP_636605.1); similar to Os06g0354500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057591.1); contains InterPro domain Acyl-CoA oxidase, C-terminal; (InterPro:IPR002655); contains InterPro domain Acyl-CoA oxidase; (InterPro:IPR012258); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type 1; (InterPro:IPR006090); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.118605635171363 1.26121236766818 0.233601588829956 1 0.137826775511694 3.57400779397566 0.118605635171363 0.078713013890434
AT3G19790_at 4.80932383510059 4.38522451462093 3.84545422444108 4.27359781896926 4.96848631136859 4.27058310190735 5.0435256706807 5.5016327869717 5.07251034183793 4.3803687764437 5.27338075834526 4.93930991872101 4.36414509919394 5.02212309771749 5.37326811313993 4.61086658367238 4.82978952071442 4.93533906848247 4.53782264680873 0.242685252824529 0.231414617016616 0.243467694255823 0.235509497515113 0.233584828230973 0.258040458359170 0.235024273556274 0.231414617016616 0.240765121112466 0.231414617016616 0.237172329799821 0.231414617016616 0.242486782341497 0.234363856562469 0.238145711749241 0.231414617016616 0.239754925209911 0.232874460754675 0.234146736544238 3 3 - 6874992 6875314 6875132.364 6874609 6875862 - gene protein_coding_gene FALSE TRUE AT3G19790.1|AT3G19790.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22450.1) -0.170217911351833 -1.26046382830762 0.233861233545836 1 0.137001478745605 9.42827604552177 -0.170217911351833 0.178178933324741
AT1G75130_at 7.99986441402063 8.08419140669324 7.79583946154023 7.92728285929784 8.27963307107635 8.02813418958276 6.95602687787822 6.59255605674608 7.55099721466252 7.11766545357432 6.90684269169765 6.86941476052314 6.63133713003007 7.04948373278086 6.92204941323801 7.07865082578905 7.19592660968268 7.30693865603667 7.39875038230759 0.151165199944536 0.144464426573285 0.144769152623564 0.144501430202474 0.144067147184757 0.146151296861964 0.148556229227991 0.148826945431391 0.153553521767873 0.145714634186994 0.142243490674602 0.141978065892253 0.145670270270791 0.146038749100146 0.149900654741142 0.141978065892253 0.151678604240867 0.145449440974375 0.146665871928757 1 1 - 28203750 28204328 28204017.909 28203631 28205611 - gene protein_coding_gene FALSE TRUE AT1G75130.1 CYP721A1 (cytochrome P450, family 721, subfamily A, polypeptide 1); oxygen binding member of CYP721A similar to BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G26710.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE92022.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.119419416915273 1.25981608744064 0.234086102901154 1 0.136287603058559 14.8833834559313 0.119419416915273 0.0811239091752885
AT1G49780_at 3.02402300096122 2.73994501168792 3.14488269545333 3.06119286805053 2.67638822036348 3.0326937056795 4.36752950593552 4.05280440666175 3.51566372258723 3.69139433000161 4.59894714803153 4.08940677098793 4.01750331709199 4.23844250532364 4.19940431919636 3.97903313079963 4.54865061778861 3.12689720476433 4.14692996246128 0.21437057037553 0.205194214919280 0.204713521609284 0.206275433663527 0.207959638671116 0.216802781821253 0.204713521609284 0.220573786165405 0.217796623146131 0.212908183971442 0.204713521609284 0.204713521609284 0.204807672690795 0.207176433776305 0.204713521609284 0.204713521609284 0.223331417230478 0.215095454260905 0.208151041624855 1 1 - 18432693 18433176 18432939.273 18432574 18433987 - gene protein_coding_gene FALSE TRUE AT1G49780.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19380.1); similar to putative immediate-early fungal elicitor protein CMPG1 [Oryza sativa (japonica cultivar-group)] (GB:BAD16187.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.126081576930131 -1.25957163914868 0.234171010893385 1 0.13601826551026 7.20465657606485 -0.126081576930131 0.0969275724158824
AT3G51780_at 7.22358574593543 7.31956448209563 7.36356104783116 7.30402218944197 7.38003231572975 7.22731469172089 7.56757785539328 7.21123536592148 6.55513810739627 6.76488425843291 7.02392218595541 6.98743539346084 7.21041305860158 6.99265184092551 6.56338912439537 7.12845556977765 7.27948413531023 6.8557779342515 6.96928316951097 0.157734856961331 0.15475644852417 0.158259779109509 0.173494320436374 0.156789209012239 0.156951753385205 0.155638517086019 0.158313036354600 0.159631804694379 0.163774417508709 0.154367653719573 0.152474628554037 0.160813090570136 0.159442053960110 0.160816266766697 0.156960916406465 0.15801637394681 0.16648479208477 0.165532350848327 3 3 - 19218028 19218647 19218338.818 19217745 19219287 - gene protein_coding_gene FALSE TRUE AT3G51780.1 ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4); protein binding A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. similar to ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G07220.1); similar to BCL-2 binding anthanogene-1 [Hordeum vulgare subsp. vulgare] (GB:CAI39214.1); similar to Os01g0831200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044700.1); contains InterPro domain Apoptosis regulator Bcl-2 protein, BAG; (InterPro:IPR003103); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.11516550453293 1.25946807243487 0.23420699183052 1 0.135904165253813 14.2087582119828 0.11516550453293 0.0698805437816337
AT4G28530_at 1.78524970902455 2.17290867443316 2.38097443058121 2.48297878787196 1.83016004307185 2.36716335990682 2.19564012041166 2.06431497061730 2.06866524590726 2.29254954541412 2.19343776213766 2.44637305310097 2.4262944641164 2.16832572389289 1.90643387512568 2.18587437774041 2.79832966147999 1.96596262872212 2.23801066397990 0.196456550446123 0.19745860108354 0.204492875479248 0.202058376256567 0.196456550446123 0.198431435472203 0.19718182986801 0.199550785107281 0.199261614252288 0.198394089760887 0.201459922637859 0.202727432472356 0.202107560360262 0.199897467188056 0.203742231649380 0.196456550446123 0.201443376810743 0.200515984542221 0.196456550446123 4 0|4 /|- 14090736 14091279 14091053 14090495 14094782 - gene protein_coding_gene FALSE TRUE AT4G28530.1 ANAC074 (Arabidopsis NAC domain containing protein 74); transcription factor similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to salicylic acid-induced protein 19 [Capsicum annuum] (GB:AAQ75123.1); similar to Os04g0515900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053312.1); similar to Os02g0810900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048472.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.136213955796025 1.25931544444133 0.234260025690887 1 0.135736026195522 4.39048414285145 0.136213955796025 0.118172797050866
AT3G19590_at 3.75660145053516 4.00972379080887 3.31293856873629 3.46483536368287 3.56075042412166 3.69970164106788 3.52146212345788 4.1595498000397 3.10349198713668 4.10897199625191 3.97949742515874 4.57626896557696 3.96828183329231 3.98841700871293 4.71576004055343 3.63183120653441 3.55375804567629 4.03757415007773 3.06482381828769 0.200893270971182 0.204592386911012 0.205629207854957 0.212097608479335 0.208763091389807 0.214629602603936 0.204326182991898 0.203574203114138 0.209570886542474 0.206445898367299 0.212974810467011 0.204037577605039 0.210500519899327 0.207609642850135 0.208214842596804 0.207051780024224 0.210152006761498 0.200893270971182 0.202500731106984 3 3|0 +|/ 6806821 6808354 6807721.444 6805637 6808599 + gene protein_coding_gene FALSE TRUE AT3G19590.1 WD-40 repeat family protein / mitotic checkpoint protein, putative similar to WD-40 repeat family protein / mitotic checkpoint protein, putative [Arabidopsis thaliana] (TAIR:AT1G49910.1); similar to putative mitotic checkpoint protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57743.1); similar to Os03g0448600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050471.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.139191596040431 1.25912632182249 0.234325753866944 1 0.135527704173351 7.42678848780959 0.139191596040431 0.124021998114945
AT2G25640_at 1.83432145958182 2.09145019236701 1.80435397515205 1.53106273209338 1.86985262112903 1.71524030704058 1.90178422886627 1.65750251456427 1.75290730933193 1.94594547777506 1.89155934525443 2.08096030955379 1.76736654808200 1.43204231756674 2.12103733928449 2.11653946047658 1.53522218537276 1.83421081424153 2.13796987025812 0.215064539550601 0.214811880564069 0.211963544596361 0.215604568755768 0.209613232419518 0.212813430399877 0.214954747850341 0.213067261376116 0.218168012113509 0.213294844672186 0.215105029071099 0.223874999637119 0.228024016071794 0.212983637559797 0.209998977106711 0.218236040381278 0.218798107172293 0.228062661769514 0.215416885369094 2 2 + 10919440 10920084 10919718.778 10917576 10921047 + gene protein_coding_gene FALSE TRUE AT2G25640.1 similar to transcription elongation factor-related [Arabidopsis thaliana] (TAIR:AT5G25520.2); similar to PHD finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD24999.1); similar to Os02g0208600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046260.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain SPOC; (InterPro:IPR012921) -0.119688726233539 -1.25909040737267 0.234338237355454 1 0.135488146312268 3.69718342506634 -0.119688726233539 0.0819741899518628
AT1G78690_at 4.91035203626108 5.33556571014226 4.88743673272295 4.59204741130123 4.76286646271617 4.85655671317719 5.94631460721355 5.09228966661212 4.88618367334194 5.39973523066846 5.6532722532845 6.13054237216229 5.79667744720261 5.72161705586179 5.51420337090118 5.19749140579899 4.89916182956628 5.14360951003823 5.5994348019468 0.208998551885429 0.207712485525273 0.217796612881070 0.204758577859726 0.202944306173879 0.224920050909719 0.215909637454569 0.214226349008908 0.225508570448958 0.202944306173879 0.207825899428214 0.208187337159509 0.211795076628181 0.204746437884774 0.214049896434488 0.206194679870877 0.233776521744320 0.208688416915538 0.202944306173879 1 1|0 +|/ 29602258 29603278 29602909.2 29601548 29603522 + gene protein_coding_gene FALSE TRUE AT1G78690.1 phospholipid/glycerol acyltransferase family protein similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G05510.2); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE88806.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain Tafazzin; (InterPro:IPR000872) -0.167224835730809 -1.25895148202096 0.234386531425852 1 0.135335135108243 10.4490235713122 -0.167224835730809 0.173590130223749
AT4G27530_at 2.13674014413619 2.46424291325425 2.36239458534508 2.31652598890116 1.89725151051164 1.98725530011427 2.06735111232828 1.85269607712699 2.04565646332421 2.23793670376239 2.34364917630351 2.13510354009315 2.26463482684504 2.60018010515896 2.33024428554016 2.16609922359335 2.59490959930391 2.55897809676984 2.18022417813419 0.198323984399251 0.204621345528413 0.204342559414776 0.202064495633399 0.206247926931316 0.205054107029263 0.201788040714075 0.202348467778565 0.199396269908378 0.200398722211767 0.203832359566224 0.198029664438889 0.200981062060804 0.201072444294845 0.205792730848009 0.197407985943171 0.215263797710912 0.210976902433360 0.201760952431655 4 4|0 +|/ 13752712 13753014 13752870.6 13752639 13753263 + gene protein_coding_gene FALSE TRUE AT4G27530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53895.1) 0.115109179733669 1.25845446249719 0.234559374286035 1 0.134787822241009 4.39997252318536 0.115109179733669 0.0699833270563803
AT2G21380_at 7.85984684265784 8.06850720855306 7.69393117576688 7.25747747970155 8.17758990204316 8.18043762841059 8.13616245430623 8.00855702360242 8.22397661213062 8.1629483291827 9.0778104082336 8.80676173184056 8.35351448486318 8.58642643360197 8.73153822203335 8.43321275650688 8.22486300155515 8.47366524799316 8.06929933726092 0.161105578963754 0.156739730098491 0.166488693343329 0.170425311227298 0.16186170846993 0.159630575287830 0.159847004461022 0.156739730098491 0.170339593759357 0.165993087607393 0.160356729338057 0.156739730098491 0.161820538005909 0.175109385960257 0.16540808851373 0.157991054767636 0.176523922739652 0.169230116349438 0.157361086688099 2 2|0 +|/ 9154839 9155924 9155315.8 9148711 9156389 + gene protein_coding_gene FALSE TRUE AT2G21380.1 kinesin motor protein-related similar to kinesin-related protein (MKRP1) [Arabidopsis thaliana] (TAIR:AT1G21730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to kinesin-related protein (MKRP2) [Arabidopsis thaliana] (TAIR:AT4G39050.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13527.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.121494970252196 1.25836183117274 0.234591599029106 1 0.134685834886333 16.2918381120568 0.121494970252196 0.086583077801463
AT1G06320_at 0.607488880762158 0.423383861133398 1.07942952440103 0.807605805723869 0.522557017096927 0.701929392714905 0.530832038421124 1.04408692937 0.702947902829393 0.958237617893712 0.817816798411818 1.21877637006878 0.90331202322271 0.824433961689054 0.944492285437244 0.666681726361208 0.696785075846006 1.10257228476221 0.616741068958298 0.219189615067899 0.215013078121563 0.217642876718938 0.225545218785873 0.212590897063192 0.212978157527919 0.214798919284101 0.229149678576839 0.216447512029200 0.212590897063192 0.219930356029887 0.213447073243470 0.21756187074027 0.215967982836668 0.216677817436680 0.214537637328602 0.2246321215192 0.217012620741396 0.222447209844051 1 1 + 1930653 1931422 1931145.7 1930601 1931448 + gene protein_coding_gene FALSE TRUE AT1G06320.1 similar to hypothetical protein MtrDRAFT_AC140034g4v1 [Medicago truncatula] (GB:ABE80503.1) 0.131991230030129 1.25808440763014 0.234688131024893 1 0.134380423332593 1.54274802067893 0.131991230030129 0.109911896319947
AT1G05210_at 2.07808700841590 2.26844956908599 1.93886890611679 2.10355305010841 1.77940749247539 1.23474933086942 2.01798834412463 1.80620355717053 3.04360053719899 2.23708008727219 2.90387887170595 3.50758750573418 1.89840831590238 2.34859385804083 3.47917223761602 1.98023241772164 1.51528811761744 2.84811277869604 2.35645417465999 0.211191470805733 0.210355977746852 0.206673295630019 0.208721307498794 0.211776663981423 0.209204644735863 0.212040164986877 0.209292817703294 0.212070542513400 0.211657043017709 0.206336315917632 0.207199508108931 0.217413100989029 0.210187863744082 0.219147649912379 0.209953874458201 0.212871042989274 0.217363500298656 0.211185989325663 1 1|0 +|/ 1510488 1511449 1510856.9 1510403 1511682 + gene protein_coding_gene FALSE TRUE AT1G05210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32380.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57387.1); similar to Os07g0458700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059570.1) -0.132044880818921 -1.25766763123723 0.234833212466388 1 0.133921692040579 4.45634883859073 -0.132044880818921 0.110112831915340
AT4G05370_at 0.382468292725493 0.591741732854664 0.64136418207466 0.670908968282868 0.281311421001587 0.327013102335723 0.634046103041511 0.206542250070251 0.697888535790254 0.917443183620791 0.248067339463711 0.86946679400998 0.823261815447229 0.471594127728789 0.458009509684202 0.146358037328000 0.949127261534157 0.483086689769045 0.851700477475325 0.192037082707964 0.187028818388170 0.187335477904826 0.19253114477113 0.190082639985881 0.187028818388170 0.191063818186280 0.187028818388170 0.189742111247667 0.195013660021144 0.191131057318910 0.190016207311466 0.18791398741367 0.193840719451168 0.195412456313111 0.187028818388170 0.193390389187731 0.189755350036097 0.189635288383823 4 4 + 2736175 2736517 2736319.909 2736132 2736581 + gene protein_coding_gene FALSE TRUE AT4G05370.1 similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G43910.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE92508.1); contains domain BCS1 AAA-TYPE ATPASE (PTHR23070); contains domain AAA-TYPE ATPASE-RELATED (PTHR23070:SF1) -0.119886397503711 -1.25724356369828 0.234980906412811 1 0.133455048797881 1.15615726279806 -0.119886397503711 0.0829068131789626
AT3G51280_at 2.11907236130738 2.04763327565555 1.99098041216003 1.94985316778649 1.93924374932042 1.98979337656354 2.00484709293830 1.87095045683212 2.38078018091991 2.38587470154383 2.35972012188508 2.78463237789642 2.39091828034227 2.61129118982506 2.71929609221138 2.44357405391781 2.32017677523672 2.48378866788481 2.02132867388469 0.191722126296165 0.182862964784269 0.182923768352442 0.188328705879720 0.185004661287996 0.194080657328018 0.189032458915203 0.182862964784269 0.19335308143136 0.186938103457655 0.186697659407525 0.190216363760323 0.191294214205842 0.182862964784269 0.200645744088281 0.192835051927344 0.194364189127523 0.182862964784269 0.193895626076237 3 3 + 19049170 19049733 19049478.364 19048121 19049930 + gene protein_coding_gene FALSE TRUE AT3G51280.1 male sterility MS5, putative similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G48850.1); similar to tetratricopeptide repeat, putative [Medicago truncatula] (GB:ABE88165.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.104177694612375 1.25721610354859 0.234990472803132 1 0.133424835628736 4.37746467674519 0.104177694612375 0.0285820967775026
AT2G36020_at 0.709308223337292 0.829420844920805 0.83419767414056 0.686485131548485 0.489690767474664 0.921961772328215 0.44536936414526 1.38185059716865 0.842666417872475 0.798103122240865 0.964032690426552 0.200466063623534 0.51018852599459 0.794029606040397 0.710641466051183 0.407206870679514 0.843680188349776 0.186930343538172 0.796170614585552 0.213832004349246 0.210538266916186 0.214687938109298 0.210117875116064 0.221077973504271 0.216418744478298 0.212512238578265 0.210117875116064 0.217712630422481 0.212412087282493 0.216194612600890 0.210117875116064 0.215718447438543 0.212063722271845 0.217737769549012 0.210117875116064 0.211553277706088 0.238738422261722 0.213940737691073 2 2 - 15130503 15131361 15130810.273 15130233 15132667 - gene protein_coding_gene FALSE TRUE AT2G36020.1 abscisic acid-responsive HVA22 family protein Identical to HVA22-like protein j (AtHVA22j) (HVA22J) [Arabidopsis Thaliana] (GB:Q8GXE9;GB:Q8LEZ1;GB:Q9SJ48); similar to abscisic acid-responsive HVA22 family protein [Arabidopsis thaliana] (TAIR:AT5G42560.1); similar to TB2/DP1, HVA22 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94986.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) -0.171784918290843 -1.25698070455003 0.235072492511965 1 0.133165856329704 1.48201572400179 -0.171784918290843 0.181509624567365
AT4G30560_at 2.67665795657506 2.80102234726755 2.24825760482295 2.43580640767760 2.82000591273167 2.59037816042517 1.97582959769029 1.61536273565577 2.69875896588078 2.04197705591516 2.37501204839815 2.61322648350453 2.12395635734659 2.49029598891255 2.63698811127962 1.81733858363850 1.72333994996427 2.17919623728152 2.04265479558976 0.221989332379206 0.219788132508521 0.217623445100784 0.212105024669501 0.214066654596104 0.217243726372644 0.215297594286861 0.214040483782391 0.215099822996292 0.221296269409757 0.214227440986526 0.212110449025620 0.219410146429897 0.212105024669501 0.220486325262882 0.214043179914826 0.221924284326979 0.221772194120931 0.217022442688103 4 4 - 14926995 14927554 14927300.818 14926980 14930162 - gene protein_coding_gene FALSE TRUE AT4G30560.1 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 9 (Cyclic nucleotide- and calmodulin-regulated ion channel 9) (CNGC9) [Arabidopsis Thaliana] (GB:Q9M0A4); similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5), calmodulin binding / cyclic nucleotide binding / potassium channel [Arabidopsis thaliana] (TAIR:AT5G57940.2); similar to ATCNGC6 (CYCLIC NUCLEOTIDE GATED CHANNEL 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G23980.1); similar to ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G19780.1); similar to Cyclic nucleotide-gated ion channel 9, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97880.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.120091404848000 1.25651397901192 0.235235181402701 1 0.132652482191583 4.64843983660706 0.120091404848000 0.083588505074666
AT2G25360_at 1.15858743237410 0.929309048536939 1.03144203189453 1.06239074136085 1.12241046865959 1.34415377466858 1.03050391186314 0.874841441728426 1.24871931635669 0.831212150603941 1.10409960019045 0.747106756580239 1.21269675464672 0.710941097036555 1.41004759378876 1.34485556350748 1.46004277377069 1.19615350165350 1.11743916279107 0.196927089882971 0.195487169597548 0.203095174600787 0.205259859080060 0.198189411808612 0.198112138719565 0.202664184956797 0.201661826808505 0.202541326431008 0.203165602716321 0.197752893112250 0.19841799786638 0.197453273057458 0.199869353156759 0.194512846038098 0.195730029231760 0.197364046100261 0.206538108426482 0.197672465218079 2 2|0 +|/ 10812034 10812812 10812288.5 10811328 10812840 + gene protein_coding_gene FALSE TRUE AT2G25360.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G25370.1); similar to Zinc finger, RING-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85921.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.112120770374900 1.25642148670401 0.235267432719266 1 0.132550761827120 2.17622143891779 0.112120770374900 0.0616539386547198
AT1G51670_at 1.53052067271437 0.825653231381812 1.50852914567938 1.4579632366254 0.95834845265642 1.23022274980825 1.38430484979577 0.949340176388204 1.22314248841964 1.19476029744419 1.47275230388000 1.16449193486185 1.49264747083144 1.56512177927227 1.63268510603826 1.42015931474324 1.35033049228581 1.51341950271424 1.36337938033081 0.220111171999835 0.215987175813646 0.226415625357675 0.220801386473144 0.214327205483847 0.232380199829750 0.214327205483847 0.217766729686125 0.228981935866178 0.229685565734595 0.214327205483847 0.227308373302006 0.216977380205341 0.224930196132739 0.217924179171033 0.220274225226919 0.219569701594345 0.21495890648551 0.216016215026861 1 1 + 19161538 19162146 19161717.4 19160810 19162417 + gene protein_coding_gene FALSE TRUE AT1G51670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48180.1); contains domain Cysteine proteinases (SSF54001) 0.153667381484582 1.25633976326835 0.235295931991626 1 0.132460889279345 2.58654950278617 0.153667381484582 0.151113976352973
AT4G01760_at 0.770744403335322 0.814840695104254 0.613902735152262 0.901426570376746 0.415404758925727 0.976200526685215 0.514251846135216 1.15546939158117 0.986328664051526 0.890319198319491 0.686235111487124 0.809263730568518 0.726004361066048 0.799086704120425 0.878869005064085 0.615568466814403 1.11996523849217 0.601883819410458 1.13885546126213 0.220866592897554 0.21663499807382 0.222024038785444 0.217494423599349 0.218903857863147 0.216015157380675 0.227867846001631 0.223009529724976 0.21755908278353 0.21750866133508 0.223852707726714 0.2218065271455 0.229939625576618 0.217740340171796 0.217474467322450 0.221078590734011 0.230697786861055 0.216015157380675 0.226076132376124 4 4 - 759163 759673 759433.182 759131 761134 - gene protein_coding_gene FALSE TRUE AT4G01760.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01910.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02180.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G11550.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.156325578085241 -1.25618783004286 0.235348922818714 1 0.132293817198750 1.66266878049813 -0.156325578085241 0.155774795157883
AT4G32680_at 4.64529581705365 5.53205221290498 5.01399434803844 5.25637823437954 4.98522953867315 4.85921686727136 4.3412656843349 5.16220528702074 4.89745825617757 4.41298408813524 4.01246125552197 3.98316447789249 4.19855211789038 4.32411585405149 3.58352581050551 4.42075819961605 4.02904056020212 4.37688797029457 4.51757609996749 0.24218824477728 0.238370422922613 0.246536291567709 0.248603393571643 0.239342085064170 0.250792837665676 0.237783645907398 0.239120487221771 0.246171438894428 0.240535988756195 0.236205814380532 0.246785045603468 0.238034455782778 0.243349586805074 0.244027999286620 0.236737458803232 0.259332720422093 0.240067088265597 0.248139575304932 4 4 - 15763489 15764000 15763770.091 15763242 15765119 - gene protein_coding_gene FALSE TRUE AT4G32680.1 similar to Unknown protein [Medicago truncatula] (GB:ABE84119.1) -0.192388101958944 -1.25596171691144 0.235427803756035 1 0.132045200973188 9.3371561297964 -0.192388101958944 0.214399844304774
AT1G17150_at 1.87231224149080 2.20120640838637 2.39014794466994 2.05098318573819 2.09131329051192 2.27764537593214 1.94690086584003 1.94715263336263 2.33658446491524 2.38623487535431 2.50687887565492 2.04646095255299 2.67118587204429 2.23572499523082 2.47816206192808 2.35605635760041 2.81624344171150 2.60125491917916 2.57022182733628 0.203029624341767 0.202853877184025 0.211882334555893 0.203613603115338 0.203595907776776 0.204220146935546 0.198913331813460 0.211881973281832 0.204307321947643 0.201048201176612 0.198913331813460 0.20413488008257 0.204310187948274 0.210109723820153 0.200371979205304 0.208268232310842 0.208193710264158 0.211329343946458 0.212030149630724 1 1 + 5866830 5867453 5867165 5865700 5867488 + gene protein_coding_gene FALSE TRUE AT1G17150.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G26620.1); similar to Exopolygalacturonase precursor (Pollen allergen Pla a 2) (GB:Q6H9K0); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.121805811947792 1.25595629320323 0.235429696111925 1 0.132039237888991 4.54471257175302 0.121805811947792 0.0878878885444471
AT3G43270_at 6.18723676971555 6.5919692514317 5.98555396112118 6.00351890724197 5.90416160547961 6.52485953403035 6.54107917692952 6.85295055113938 6.32158345506205 6.05769482843858 6.7727133796431 6.67303230992022 6.58825238178744 6.3291999991719 6.47050023661483 6.95586809891637 6.84003210392815 6.88688411339517 5.49179359183539 0.191699432751606 0.189586379947574 0.190975846360863 0.188775320617515 0.190890780907004 0.193714036542602 0.196780499163462 0.189039560641738 0.188774879431953 0.184967368517968 0.191719757511784 0.186149679918348 0.187879211775715 0.187124368915965 0.189671983298621 0.183771598311771 0.193873056097115 0.184517157729216 0.190479376916969 3 3 - 15233390 15233919 15233652.818 15233113 15236448 - gene protein_coding_gene FALSE TRUE AT3G43270.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G33220.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); similar to pectin methylesterase PME1 [Vitis vinifera] (GB:AAK81875.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.146875467070525 1.25551724660509 0.235582922199229 1 0.131556591076851 12.6472083628199 0.146875467070525 0.139162292157223
AT3G04130_at 2.55215063308365 2.59410630819333 2.90512488247206 2.77547224791382 2.27822480043517 2.67379632239261 2.62415447618574 3.02749582406676 2.44147743535903 2.68620147330124 2.47157395069323 2.45687050087114 2.54784721139951 2.12345284121318 2.33703009496859 2.64883388019622 2.67219763356698 2.49415373288457 2.9192795478428 0.178595398605085 0.182311539743018 0.180296465650690 0.180577899382479 0.183676692387637 0.185821109757839 0.180597194043739 0.193878609071553 0.18149420769387 0.185532539063181 0.179054366814737 0.178483825591999 0.183024821631438 0.177285156582428 0.187363135007197 0.177614718895226 0.184162807682278 0.185291432530458 0.177285156582428 3 3 + 1085107 1085639 1085364.091 1083981 1086392 + gene protein_coding_gene FALSE TRUE AT3G04130.1|AT3G04130.2 pentatricopeptide (PPR) repeat-containing protein|binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22670.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE84187.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.127323375927901 -1.25551668839967 0.235583117062707 1 0.131555977515963 5.25447291995549 -0.127323375927901 0.100570097554362
AT3G30820_at 1.21210387465842 0.899666096911809 0.870279536097366 0.485021310843022 0.484754059476716 1.22023360300781 0.882265723174272 0.628482347038714 1.50409301955480 0.881394655643374 1.24074236783103 1.15069224381523 0.953393884094926 0.383392063127934 1.29124331269673 1.09011645219362 1.12048485688287 1.07974067626699 1.26003382583111 0.189021534091040 0.191493397789744 0.196467516431335 0.195838090023474 0.190569201846672 0.197827532186291 0.20694299526506 0.201822387654794 0.204664892180219 0.191929192320889 0.196126781009219 0.189021534091040 0.200823137392452 0.193671804641903 0.200635125831575 0.189914676111004 0.200509615301888 0.196127457322751 0.197022151618714 3 3 + 12533131 12533676 12533314.455 12532322 12533714 + gene protein_coding_gene FALSE TRUE AT3G30820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14000.1); similar to hypothetical protein 27.t00034 [Brassica oleracea] (GB:ABD65055.1) -0.158502742326170 -1.25546918296564 0.235599701173626 1 0.131503761843201 1.96230060179606 -0.158502742326170 0.159677738608335
AT1G76340_at 4.79947442792152 4.93522890958621 4.96105559258014 5.17311206927908 5.72559915989038 4.89014922393383 5.62872369898338 5.31822918192194 5.33131216341594 4.77970734271877 5.4528842026095 5.6565541562398 5.07750411906958 5.55769788307739 5.78212651228188 5.1552840082134 5.15754745625768 5.53733721031595 5.25372831344604 0.245409118603372 0.250978802396420 0.23629417209106 0.245477976783029 0.236896469412673 0.248651257883193 0.241060521601724 0.23741294725798 0.259037094167083 0.238520957761948 0.244748166401911 0.23629417209106 0.240259668618325 0.241273066582451 0.238387150628545 0.23629417209106 0.257878675222131 0.249391050144965 0.241743772626292 1 1 - 28640222 28640642 28640432.455 28639849 28641200 - gene protein_coding_gene FALSE TRUE AT1G76340.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G19980.1); similar to Os03g0215000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049374.1); similar to integral membrane family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94634.1); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132:SF11) 0.158799646899413 1.25504859195240 0.235746570329375 1 0.131041531155882 10.4507963080296 0.158799646899413 0.160277085074535
AT4G34360_at 2.95006791279833 2.80170189393002 2.91583936659892 2.75621203436882 2.06267548719233 2.50034669610518 2.17474060592171 2.54158827384909 2.93288431675686 2.75061644192432 2.62375992337031 2.46235655245357 1.97517542959889 2.19251050283215 3.1977536969718 2.27938834974963 2.81711531200959 2.70131913272708 2.51294237482226 0.225279638208087 0.230762433445770 0.232363388184229 0.229006781753070 0.226945788802034 0.235589417213753 0.228268602020136 0.236922562545059 0.230709016044163 0.222067615427651 0.221672665544658 0.223611170022688 0.230911111101115 0.228895405092967 0.228359448143392 0.221719283389592 0.230467568767863 0.227885681036089 0.222104858078275 4 4|0 +|/ 16432417 16433719 16432937.1 16431945 16433962 + gene protein_coding_gene FALSE TRUE AT4G34360.1 protease-related similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to Os11g0557700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068093.1); similar to PREDICTED: similar to C17E4.11 isoform 1 [Canis familiaris] (GB:XP_545229.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.129615812131081 -1.25425147957124 0.236025122592082 1 0.130165811114936 5.21955657066152 -0.129615812131081 0.105779676960662
AT3G47130_at 0.83501644390618 0.671317694485087 0.932179539764924 1.27191623106865 0.706446994634856 0.504726776636893 0.961156386717698 0.351949739573071 0.96932664819144 0.614685827573929 0.703892352766282 1.12760686960891 1.01116991929343 1.12221263797111 0.990938089678895 1.17889814704832 0.991873977282526 1.05522763031290 1.08425426388608 0.200052441673724 0.192919785873359 0.190487306997502 0.194766149853343 0.191789063545615 0.194713145854745 0.196167536793668 0.202235789768186 0.191382231249293 0.210214429151042 0.199618721288037 0.194062453125001 0.200752842991269 0.197446507180817 0.191531218145096 0.197053242563697 0.200449444335143 0.195204965415304 0.194566949025519 3 3 + 17365289 17365798 17365528.8 17364699 17365836 + gene protein_coding_gene FALSE TRUE AT3G47130.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G47150.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.141131262900319 1.25403636212462 0.236100341285646 1 0.129929549017383 1.73541357562131 0.141131262900319 0.128811514233101
AT4G27650_at 7.88807684923224 8.06176919431573 8.01211254474407 7.86447713651511 8.22435161574046 7.89984857648725 8.22407382137634 8.1164830887291 7.8846126174185 8.02497519907326 7.84378370082039 7.9534032189113 7.82754194592158 7.66363667980515 7.74590501825046 8.16141836336563 7.50348491429948 7.52681724758708 7.89853578860696 0.139616177735711 0.135613628133958 0.140236360603885 0.143962709956651 0.133794681363616 0.13894373480252 0.135647549640783 0.133794681363616 0.140873349357305 0.143983598127570 0.143453002352005 0.139883682880041 0.139673183503444 0.145103009212441 0.147423933549897 0.133794681363616 0.151111898079892 0.139685315538876 0.14135121044252 4 0|4 /|- 13803497 13805007 13804084.286 13803303 13807941 - gene protein_coding_gene FALSE TRUE AT4G27650.1 PEL1 (PELOTA); translation release factor Encodes Arabidopsis homolog of Drosophila pelota protein. similar to eukaryotic release factor 1 family protein / eRF1 family protein [Arabidopsis thaliana] (TAIR:AT3G58390.1); similar to putative pelota [Oryza sativa (japonica cultivar-group)] (GB:AAL87190.1); similar to OSJNBa0015K02.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE02893.2); similar to OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa (indica cultivar-group)] (GB:CAH67807.1); contains InterPro domain Probable translation factor pelota; (InterPro:IPR004405); contains InterPro domain eRF1 domain 2; (InterPro:IPR005141); contains InterPro domain eRF1 domain 3; (InterPro:IPR005142); contains InterPro domain eRF1 domain 1; (InterPro:IPR005140) -0.115097792810534 -1.25396188393981 0.236126388091348 1 0.129847756972897 15.8935441473024 -0.115097792810534 0.0711090926943828
AT4G35240_at 3.93071619080392 4.26276598262983 4.08904304747355 4.00913403633799 4.78279568876315 3.59044075663894 4.54993614125352 4.00127278358822 4.4636056750011 3.9873219665183 5.2248073155728 5.25396986628302 4.99671780938744 5.05540432476993 4.70970728635814 5.0004351796852 4.45722472365376 4.23153152586286 4.71073023588609 0.194228128598212 0.196172830903881 0.199617094139550 0.196110578398336 0.195128834670003 0.209363729121283 0.198147527958895 0.19753930390416 0.195827929609020 0.200429037358701 0.195493718926762 0.195801103789271 0.195791870675430 0.198082482674709 0.19643155256861 0.194228128598212 0.202777071937122 0.201388226239184 0.198146976679936 4 4 - 16761501 16762044 16761776.909 16761484 16764329 - gene protein_coding_gene FALSE TRUE AT4G35240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17110.1); similar to Os09g0547300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063849.1); similar to bzip-related transcription factor -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46467.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.205343034606339 1.25395555940726 0.236128600038821 1 0.129840811525228 8.7787351016437 0.205343034606339 0.234703487598772
AT3G30240_at 1.04133185289580 1.25881276609358 1.25601108859402 1.01104017598430 1.18385181960295 0.916776526016909 1.25596161459553 1.27034844607277 0.842475943666618 0.594941119118913 1.20503203555631 0.855657018459398 1.04177662557365 1.06294751989160 1.36929530092322 0.617150574496344 1.48422432688771 1.06698753535579 0.7872110817148 0.193243736054875 0.194224570217719 0.191982698320644 0.19105604681473 0.190374795285332 0.187561817251723 0.187561817251723 0.192614247119121 0.204698133782719 0.194974288488478 0.191494935763262 0.190749184081140 0.197851085522756 0.200740307530296 0.192679116001756 0.190910641142823 0.191265547885571 0.196718498128664 0.201555111890940 3 3 + 11886316 11886621 11886457.909 11886304 11886966 + gene protein_coding_gene FALSE TRUE AT3G30240.1 contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) 0.115823692472340 1.25370432452936 0.236216480679612 1 0.129564932092358 2.06398007722020 0.115823692472340 0.0731849153299878
AT1G55150_at 7.12663530812104 7.3785555999396 7.29368217872683 7.07800019170557 7.27200429765239 7.52779436523955 7.57462592164396 7.01024753654548 6.44154498660429 6.42480155225797 5.78294840091443 6.16563424329658 6.14782935378626 5.61732152761153 6.35999329533348 6.23186184048778 6.83973414734742 6.13303007506373 6.49824481958133 0.19897042489994 0.199585568920645 0.197548160216384 0.203165862250663 0.197444143554056 0.195706705679257 0.203607760126883 0.19972091043506 0.200341963983324 0.194154919559134 0.200030332912811 0.197965297960512 0.205865665500458 0.197624764924638 0.198057881621423 0.196482055559920 0.201986413849533 0.194559417905082 0.202980255352453 1 1 + 20579935 20580606 20580300.091 20578147 20580987 + gene protein_coding_gene FALSE TRUE AT1G55150.1 DEAD box RNA helicase, putative (RH20) Identical to DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.1.-) (RH20) [Arabidopsis Thaliana] (GB:Q9C718;GB:Q9ZS02); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to Os01g0197200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042298.1); similar to ethylene-responsive RNA helicase [Lycopersicon esculentum] (GB:AAD46404.1); similar to putative DEAD box RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD82427.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.137357754449572 -1.25369655386383 0.236219199238695 1 0.129556399814186 13.5900221232608 -0.137357754449572 0.121623585142688
AT4G10020_at 1.49824829082719 1.26560049146047 1.59840474801585 1.11765406216680 1.10062818984334 1.28534946901184 1.49986166281461 1.44524944243097 1.80221917274617 1.75841317819389 1.72664168331795 1.8642549065372 1.65958317048274 1.70181709821887 1.42519495800185 1.14435800323085 1.96546085051694 1.24915156409417 1.51653565156835 0.210280574678982 0.206386301534871 0.215450099321942 0.206386301534871 0.206386301534871 0.209853749031993 0.210282146800275 0.207152209516094 0.208825971089117 0.207658678858350 0.206475024184980 0.207274254629504 0.207217985705125 0.212880421954734 0.213761894921254 0.209096630961913 0.213322175000291 0.213201280337244 0.209065506838481 4 4|0 +|/ 6269424 6270023 6269798.2 6268286 6270431 + gene protein_coding_gene FALSE TRUE AT4G10020.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G50700.1); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G50600.1); similar to steroleosin-B [Sesamum indicum] (GB:AAM46847.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.126031204746625 -1.25313378144675 0.236416151760705 1 0.128938571584346 2.99359810130615 -0.126031204746625 0.0982534013936895
AT2G25735_at 6.2057365173426 6.480811362183 4.91254622196936 4.96155554786667 5.86608767632246 5.9041210476252 2.45284203905133 2.03697378121956 6.08612104509564 3.87952295074411 4.14619340066018 5.5759350107787 3.04318049348990 4.30320964401399 3.39173999570946 3.28775184143869 2.62247799973022 3.37619346129923 3.81363264480206 0.273373079978515 0.264946692295643 0.274099943068772 0.269221966799015 0.267581541982981 0.267658364553898 0.26670096334846 0.271986079729308 0.289126303699206 0.267714236499496 0.263969745617865 0.26196505875339 0.268074346361021 0.271871328141691 0.270062487305822 0.26196505875339 0.268515107326406 0.283131455445606 0.272724395237078 2 2 - 10982434 10982719 10982566.545 10982138 10982837 - gene protein_coding_gene FALSE TRUE AT2G25735.1 unknown protein 0.121114857919787 1.25284360445964 0.236517756317237 1 0.128620085500779 9.00829799641618 0.121114857919787 0.086952181530162
AT4G34040_at 6.98364528846497 6.99179827573319 7.08629622208119 7.28535363401266 7.53719622893 7.43808702005041 7.4716129183403 7.46058084721445 6.859020385055 6.61319016913607 6.49962834004499 6.66707979934323 6.98032404462079 6.80830897158183 6.76306636212893 7.02286432438198 6.72667935489356 6.94110633764194 6.62678783378324 0.166938396125829 0.171232946557592 0.176824576520434 0.172386525172351 0.169577472491315 0.175470738605981 0.168089733397557 0.172799279899919 0.171598624977341 0.170902129325481 0.175641764784835 0.173535010233086 0.166114870259120 0.171910877866161 0.173567451054096 0.165261336017961 0.173715573892696 0.169784973966899 0.167755909501457 4 4|0 -|/ 16304675 16306080 16305288.9 16304285 16308684 - gene protein_coding_gene FALSE TRUE AT4G34040.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G15530.2); similar to Zinc finger, C3HC4 type (RING finger), putative [Medicago truncatula] (GB:ABE89604.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.105645003167611 1.25267072949819 0.236578304696961 1 0.128430370693169 14.0322204649306 0.105645003167611 0.0385545697791895
AT4G19030_at 1.54782098901963 1.75563392552437 1.56334767796723 1.97885718983933 1.43470421585842 1.39050275239817 1.45664795015242 1.92663396480224 1.54393273509526 1.57326864185757 1.39481331088984 1.30522592293961 1.39103524209168 1.4160543918956 1.17375008073629 1.30946033093253 1.59393521864113 1.46755522811321 1.59001854645198 0.192995190794198 0.188690523143117 0.197282121402297 0.192073984512861 0.196051124067951 0.197480729957180 0.191741107900225 0.194322271869743 0.197106729680731 0.192524844572705 0.195751294864358 0.190749376101964 0.188690523143117 0.192044830540843 0.188690523143117 0.195502969920535 0.198431276270632 0.198368710916395 0.193585750832673 4 4|0 -|/ 10421836 10422971 10422288.778 10421536 10423498 - gene protein_coding_gene FALSE TRUE AT4G19030.1 NLM1 (NOD26-like intrinsic protein 1;1); water channel an aquaporin whose expression level is reduced by ABA, NaCl, dark, and dessication. is expressed at relatively low levels under normal conditions. Identical to Aquaporin NIP1.1 (NOD26-like intrinsic protein 1.1) (Nodulin-26-like major intrinsic protein 1) (AtNLM1) (Protein NLM1) (NodLikeMip1) (NIP1.1) [Arabidopsis Thaliana] (GB:Q8VZW1;GB:O48595;GB:O49416); similar to NIP1,2/NLM2 (NOD26-like intrinsic protein 1,2), water channel [Arabidopsis thaliana] (TAIR:AT4G18910.1); similar to NIP2 [Medicago truncatula] (GB:AAS48064.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.133712920190249 -1.25258227433268 0.236609290407917 1 0.128333306424035 3.10704459498602 -0.133712920190249 0.114618507123605
AT1G72950_at 2.46851230103339 2.58603074969356 2.44633673063039 2.82136947602888 1.90598766130676 2.59800536635263 2.46632036555138 2.01727746073597 2.47512103003525 2.93908344780428 2.36439070133819 2.37417270939599 2.51065717581154 2.24855416931893 1.92402436088177 2.35514002091948 2.25360675706748 2.04136157887848 2.48098621485736 0.184806221353637 0.185342408392523 0.189569499969008 0.184640484442719 0.186019309190213 0.189642951201561 0.184401281198252 0.196745838123679 0.196223344256689 0.182393923547982 0.185265408290565 0.187189447828529 0.189933807892523 0.185123958162668 0.193443147340360 0.185227845483961 0.194430383765361 0.186175719809653 0.191340605428700 1 1 + 27448910 27449396 27449159.909 27448246 27449641 + gene protein_coding_gene FALSE TRUE AT1G72950.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72940.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44391.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -0.157176103685694 -1.25206807569037 0.236789478303235 1 0.127769160937138 4.85908934646684 -0.157176103685694 0.158133350192273
AT4G36640_at 5.90414967624983 6.16752286363372 6.43278290871771 6.52408565305153 5.81369314055699 5.29570576622604 5.60893488146001 5.45892449889571 3.72928430834956 4.61258182412828 4.09118966663747 4.0088365254354 4.29230085779225 4.58623712534594 3.59926304781563 4.15975554032545 4.77903495055281 4.25324961292224 4.24269505407077 0.217263178383313 0.22198332571111 0.227628682899953 0.225882288044596 0.224888427502847 0.23156361772887 0.222647177303913 0.217263178383313 0.241671723302324 0.222820831067177 0.220102722977850 0.222973516635901 0.21729414335115 0.226860012479227 0.233166460814178 0.222056182174339 0.227504009878506 0.233636607603068 0.217263178383313 4 0|4 /|- 17277226 17277798 17277617 17276941 17279206 - gene protein_coding_gene FALSE TRUE AT4G36640.1|AT4G36640.2 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to transporter [Arabidopsis thaliana] (TAIR:AT1G75170.2); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE78877.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071)|similar to transporter [Arabidopsis thaliana] (TAIR:AT1G75170.2); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE78877.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.129031787041055 1.25190241931984 0.236847551969863 1 0.127587449371606 10.1087684959504 0.129031787041055 0.105053683085926
AT1G47400_at 3.33389596192925 3.98759261476156 2.60575282988309 2.67759500266007 5.22974290431211 4.4762443963721 3.21957587417577 3.07209684699332 3.97142860844957 6.33131557765975 3.30755121927717 6.78302394099877 6.191269916905 4.94190461646907 5.16838435530375 7.68293196625961 5.27731745067223 2.57143542748721 5.44847386097963 0.279544394210080 0.279544394210080 0.293776278162817 0.294081898946021 0.285977760314682 0.279544394210080 0.279898294226430 0.280978233174318 0.304587220816214 0.279544394210080 0.287198435420118 0.282260793448254 0.282286493237261 0.286657935168802 0.279544394210080 0.292276708018469 0.289184491473238 0.313485474599934 0.279570368697202 1 1 + 17388261 17388351 17388300.5 17388157 17388626 + gene protein_coding_gene FALSE TRUE AT1G47400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47395.1) 0.167057402408579 1.25153956052882 0.236974798479951 1 0.127189483916188 8.82075374256986 0.167057402408579 0.174947110916769
AT3G03680_at 2.91507831832517 3.17804370023352 2.30248407995635 2.26900172056306 2.67384211771314 2.81953328869324 2.05195578258038 2.99689984382630 2.26698212980708 2.57642496454161 2.64408857119787 2.77468996602484 2.50959478090439 2.2514744541031 2.20558890403299 2.62809777050070 2.49347917791965 2.40317378402695 2.80546978474846 0.23835610080277 0.236406406674567 0.238692807730672 0.226235715182488 0.226347998669344 0.235153533896782 0.222331486919721 0.224468765807263 0.247165202573260 0.224164819614214 0.230362603141027 0.227764520673625 0.221402418008591 0.223739975247191 0.227033141382092 0.221402418008591 0.236979010742924 0.226341485156630 0.232101785738642 3 3 + 910090 910650 910315.364 907507 910814 + gene protein_coding_gene FALSE TRUE AT3G03680.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48060.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17980.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G74720.1); similar to putative phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAB89913.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to putative phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAP68393.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.165065654893401 -1.25122778759861 0.237084174379530 1 0.126847613944547 5.17005438271366 -0.165065654893401 0.171701019152613
AT2G44050_at 7.45915969130023 7.23110173271994 6.78158301733183 7.05352136871557 7.3381488908041 7.00343129435251 7.83169014237312 7.79103469881033 7.1590940069593 6.91235164150568 7.66603470770092 7.98896699322494 7.53252491325358 8.02283645840522 8.39669719322571 7.84182231971994 7.81742562375575 7.4992670920474 7.14330771997375 0.151008893431308 0.145364090291485 0.155652338861855 0.150690136242592 0.149787883392362 0.149243145120261 0.153567035645441 0.149686148241942 0.157726870221299 0.161416218084486 0.145364090291485 0.146141913758092 0.152580620115229 0.146650837118748 0.146336158852851 0.155634292342059 0.166039589344949 0.155216132431635 0.149004654698984 2 0|2 /|+ 18231620 18232750 18232056.167 18231327 18233236 + gene protein_coding_gene FALSE TRUE AT2G44050.1 COS1 (COI1 SUPPRESSOR1); 6,7-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Identical to 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) [Arabidopsis Thaliana] (GB:O80575); similar to 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum] (GB:AAD44809.1); contains InterPro domain 6,7-dimethyl-8-ribityllumazine synthase; (InterPro:IPR002180) 0.120018516510267 1.25097856307548 0.237171636399877 1 0.126574375082755 14.7698495389574 0.120018516510267 0.0847172194123307
AT1G23860_at 6.79914419168882 7.04874632085295 6.88111949217126 7.23808540041878 7.97696037709457 8.15793682433783 6.90266213087414 7.47737598844132 6.76482805367252 6.29414174852206 6.35123336728021 5.59222573116361 6.31064722695248 6.49616091290681 6.45093485024449 6.36262254348453 6.99686955474786 6.73406310982628 6.852090703379 0.213868881056754 0.209947772437188 0.209024137477507 0.215464246908228 0.209731493319446 0.212243497512579 0.209988287156602 0.215599742135392 0.216099211683781 0.209840539130842 0.209020328450701 0.209551411633361 0.206787623045133 0.210128376542917 0.208370786895770 0.206787623045133 0.206787623045133 0.208726194404787 0.208463315751998 1 1|0 -|/ 8428228 8429115 8428579.6 8427345 8429308 - gene protein_coding_gene FALSE TRUE AT1G23860.1|AT1G23860.2 SRZ-21 Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. similar to SRZ-22 (serine/arginine-rich 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84871.1); similar to Os06g0187900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057018.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.140683929546281 1.25075083353514 0.237251577806031 1 0.126324737021944 13.8346862560351 0.140683929546281 0.128664062271050
AT2G20480_at 1.02565658641779 1.07685825843820 1.48728527238132 1.43420712816510 1.32906720956944 1.71928432031047 0.911850465029953 1.49114262457374 1.39179970992739 1.60607793373195 1.65990449822626 1.24745200484127 1.30834004791073 1.31767234393249 1.35165817153190 1.41557453509070 1.65326502138793 1.43507601452178 1.54941870639954 0.180904700734132 0.184787835352690 0.178225602086869 0.184927489119107 0.177847065180107 0.181957539018067 0.188309539337964 0.181692793482252 0.181523396734914 0.182429040862351 0.184306056173101 0.181451267401905 0.202191909025219 0.184870058962296 0.197291632955698 0.187758184580865 0.189122712990514 0.178635248305481 0.183695049706988 2 2|0 -|/ 8837807 8838547 8838355.222 8837648 8838614 - gene protein_coding_gene FALSE TRUE AT2G20480.1 similar to Os09g0446000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063306.1) 0.136968189326207 1.25051161318369 0.237335576321108 1 0.126062538320043 2.77911062296076 0.136968189326207 0.121543979445025
AT1G09740_at 6.77320071612467 6.38416817517827 6.87015394582005 6.38540836292976 6.20239831888457 6.09473452026196 6.19269539945715 5.63080495066543 5.10330651536036 5.25907578514368 5.14315369889506 4.2888194244673 4.34708361193321 5.07033920734118 4.87053537694696 4.0426379028465 4.40471633567646 5.21928801299654 4.98729395464449 0.219131363457494 0.218299822339135 0.212581262806918 0.209670016361418 0.212537956311641 0.220461419706244 0.207720543908219 0.210808499662118 0.210566933801415 0.209548634294391 0.207720543908219 0.212220130031231 0.226981373436853 0.211917742499837 0.234785007169951 0.213978274346096 0.228592966413685 0.229981984143894 0.219453168621742 1 1|0 +|/ 3154629 3155783 3155032 3154534 3156275 + gene protein_coding_gene FALSE TRUE AT1G09740.1 ethylene-responsive protein, putative similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G11930.1); similar to ER6 protein [Lycopersicon esculentum] (GB:AAD46412.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) -0.150140289355289 -1.25018788390725 0.237449287038908 1 0.125707771321207 11.2116357727173 -0.150140289355289 0.146191451352798
AT1G65240_at 1.33269796639783 1.44165652366499 1.28700628898434 1.20409423101454 1.08040685938689 0.9621279643639 0.748467063579096 1.41451849617435 1.0314470684802 1.37182032748634 1.00379394601561 0.927941597354047 1.00403742399161 1.08335534799268 1.03233155655329 0.991788968534613 1.11007224947452 0.927685366961536 1.13935984877956 0.230435520070695 0.234950864794183 0.233195937249796 0.235474654701931 0.227769120958862 0.229962659938299 0.227769120958862 0.230673706518493 0.237363747638823 0.229811926587258 0.229184221982476 0.227769120958862 0.232284618134192 0.238252751442474 0.229008461438645 0.238546661292604 0.228997733530726 0.230488568084076 0.227776133919080 1 1|0 -|/ 24234628 24235682 24235104.2 24234530 24237012 - gene protein_coding_gene FALSE TRUE AT1G65240.1 aspartyl protease family protein Identical to Aspartic proteinase-like protein 2 precursor (EC 3.4.23.-) [Arabidopsis Thaliana] (GB:Q9S9K4); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G36260.1); similar to Os02g0473200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046837.1); similar to Eukaryotic aspartyl protease [Medicago truncatula] (GB:ABE89788.1); similar to OSJNBa0008A08.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01597.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.135838058827805 -1.24993948862666 0.237536566299145 1 0.125435606358456 2.27937270187496 -0.135838058827805 0.119440416423148
AT3G26490_at 3.63109143856953 4.33226842663365 3.32573003628730 2.8446697144051 3.52596000812584 3.42481325899535 3.69272938496843 3.83434513899394 3.52321532358592 3.20217109624802 4.29788922626202 4.33533642891577 3.61533775261235 3.86270602846980 3.34098473785931 3.81627074619173 2.86182427820444 2.95806058960036 3.31966961029025 0.194815729989451 0.191487118421406 0.194110864899758 0.190570619877199 0.185358755935284 0.194776881556057 0.193824384159042 0.193605615046042 0.191856793534587 0.191148811875963 0.187164354657379 0.185680367743593 0.189881906844302 0.18739219462837 0.194665996402812 0.185280040731549 0.203402759937197 0.193190583289507 0.185280040731549 3 3 + 9706732 9707324 9707107.545 9705379 9707398 + gene protein_coding_gene FALSE TRUE AT3G26490.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G67900.2); similar to Os12g0583500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067147.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94544.1); similar to OSIGBa0116M22.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66936.1); contains InterPro domain NPH3; (InterPro:IPR004249) -0.152308064682457 -1.24944036230854 0.237712023786399 1 0.124888836260456 7.06865254265033 -0.152308064682457 0.150204458902338
AT1G10560_at 3.17383730907595 3.39005704183560 3.23748085076794 2.83560263186704 3.12814362918237 3.386143405436 3.31048110875689 2.84158834147125 3.29970084151671 3.04790455857746 3.81292206221919 3.58275167033911 3.3625278480954 3.08858563298578 3.61320232424224 3.39158527049537 3.51017378607303 3.40348164695791 3.14637888131595 0.219009545263417 0.228648869571855 0.220099296431734 0.214101700449206 0.222657284534364 0.212193798849541 0.227395936190957 0.218752587430901 0.218910263317302 0.214427338480147 0.224832900306498 0.217967322613548 0.223119862021922 0.215574123392002 0.220680499869139 0.214469271653658 0.226565469582924 0.219083346918697 0.219966521367171 1 1 + 3486193 3486678 3486399 3484581 3486966 + gene protein_coding_gene FALSE TRUE AT1G10560.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60190.1); similar to putative Avr9/Cf-9 rapidly elicited protein 276 [Oryza sativa (japonica cultivar-group)] (GB:BAD26073.1); similar to Os09g0378700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063049.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.136922016033858 1.24929141744277 0.237764402506158 1 0.124725704778121 6.48057439345549 0.136922016033858 0.121715557621221
AT3G12300_at 5.57998899196524 5.86081013857452 5.57284187757362 6.01862553640837 6.39690091613395 6.29580164565125 5.80882631690461 5.73271777037499 5.19806014247627 5.3445207910272 5.06548602221798 4.70970205317243 4.89194847389405 4.56072633392688 4.31076972889546 5.19522393891434 5.24553958101769 4.52455951426917 5.61453553450038 0.241548221408197 0.237446377168415 0.239493570276974 0.238428601886732 0.243105321668302 0.235018497985077 0.241683826038232 0.239169390596054 0.242439835086357 0.246372799555911 0.237012526161772 0.240581733356392 0.23809339914264 0.232707843479759 0.253346385191741 0.235312816856638 0.241528180565836 0.247977975134131 0.24702704723844 3 3|0 -|/ 3921905 3923064 3922348 3921535 3923162 - gene protein_coding_gene FALSE TRUE AT3G12300.1 similar to Protein of unknown function DUF667 [Medicago truncatula] (GB:ABE88669.1); contains InterPro domain Protein of unknown function DUF667; (InterPro:IPR007714) -0.123627172029582 -1.24892865945928 0.237892010792559 1 0.124328454308149 11.0076641217599 -0.123627172029582 0.0937689889444266
AT1G80080_at 1.33983791283187 1.89993600469322 1.04444078106929 0.858534727169723 1.24548431486512 1.41006961353819 1.14728702715032 1.02415871573846 1.29298686316177 1.07050681707364 1.06644245383928 1.68157337994782 1.04435319794217 0.506258969113218 1.30629222204116 1.398854956678 1.26568343889206 1.35921083091565 1.38858555341446 0.195393292813919 0.201038801722573 0.20356370529369 0.201824693208924 0.199367245008235 0.195065187103166 0.195218837673532 0.202060521326826 0.201441209267159 0.198934360947093 0.195511457685285 0.19707210437715 0.20733981414669 0.204016588532355 0.197762865914537 0.196451167670938 0.195065187103166 0.204419785598027 0.202934972119394 1 1 - 30133002 30133541 30133244.273 30132898 30134484 - gene protein_coding_gene FALSE TRUE AT1G80080.1 TMM (TOO MANY MOUTHS); protein binding Encodes a transmembrane leucine-repeat containing receptor-like protein that is expressed in proliferative postprotodermal cells. Recessive mutation leads to disruption of asymmetric cell division during stomata development. Identical to Protein TOO MANY MOUTHS precursor (TMM) [Arabidopsis Thaliana] (GB:Q9SSD1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G42800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS72353.1); similar to putative leucine-rich repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47071.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.130140976327505 -1.24850901331801 0.238039699663879 1 0.123869011406993 2.47335701665925 -0.130140976327505 0.108144604465831
AT1G26960_at 2.73299834136015 2.84974265557274 3.51032694887870 2.97589152555318 2.46624268313876 2.9506374306152 2.59505629636675 2.91600939674900 2.92849541233025 2.71250604905600 3.26518548272841 2.61684996623436 2.99837501574399 3.31134656365621 2.41533760458639 2.65575127235504 2.85151795726585 2.56261084464323 2.59696192382175 0.222017443848213 0.218911381136675 0.218381747645261 0.219753738028700 0.212526641125764 0.218517198599009 0.212071225753435 0.213502146790056 0.215374217410805 0.223584092616042 0.212071225753435 0.214140101396872 0.212296580153788 0.215356610084239 0.212071225753435 0.214563975254431 0.212071225753435 0.213971510462485 0.215199293413314 1 1|0 +|/ 9356494 9357190 9356927.8 9355907 9357447 + gene protein_coding_gene FALSE TRUE AT1G26960.1 ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23); DNA binding / transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-23 (Homeodomain transcription factor ATHB-23) (HD-ZIP protein ATHB-23) (ATHB-23) [Arabidopsis Thaliana] (GB:Q8LFD3;GB:Q9ZVG2); similar to ATHB13 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69780.1); similar to 64038 (GB:AAD14502.1); contains InterPro domain Moesin; (InterPro:IPR008954); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.145478508933326 1.24848726540793 0.238047355565815 1 0.123845204120658 5.66491797651482 0.145478508933326 0.138107989500150
AT4G17280_at 1.36695759969021 1.41824724038893 1.46238571188366 1.60574112637932 1.51092349376990 1.1777532884885 1.55415884207663 1.27751055490013 1.48395308779040 1.24504932172261 1.23749690360328 1.86243723362789 1.65839003995506 1.17805181596273 1.33940053337403 1.40381916801564 1.75187717251087 1.93268123527872 1.30654384774137 0.218053152249136 0.226525960415939 0.224797709147061 0.227282609433945 0.214205733718156 0.219043341990283 0.222230869416747 0.21587097512281 0.216437062005548 0.214205733718156 0.217165746318419 0.214903183312459 0.219520232943634 0.219720988937889 0.222620091855366 0.214205733718156 0.214466385779311 0.217767276579587 0.222656264828595 4 4 - 9679340 9679969 9679645 9678638 9680401 - gene protein_coding_gene FALSE TRUE AT4G17280.1 auxin-responsive family protein similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G47530.1); similar to hypothetical protein 31.t00023 [Brassica oleracea] (GB:ABD65115.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) 0.117659761452969 1.24817896455238 0.238155907863402 1 0.123507741828686 2.86706040646840 0.117659761452969 0.0794390771516235
AT3G47040_at 1.99935879122924 1.56572612667321 1.96897931334987 1.89158377799631 1.13960248584081 1.82500270214512 1.4621924836518 1.82301377291017 1.98336449888562 2.13621752028903 1.85126756208394 1.73991207440655 1.84942195631952 1.31781452000246 1.75261955166178 1.92842187371173 1.51506677696832 1.58199761494423 1.86400574603875 0.178541106745204 0.178541106745204 0.194540768738447 0.181936271658388 0.181096458782050 0.188304042017904 0.185757953561713 0.178541106745204 0.181900747443578 0.182360798108272 0.183217129948486 0.183798418789740 0.182649784667668 0.178984532987475 0.185129295987506 0.181729966376946 0.184185169208030 0.193987945499399 0.184274913985007 3 3|0 -|/ 17335230 17335861 17335535.8 17335216 17338090 - gene protein_coding_gene FALSE TRUE AT3G47040.1 glycosyl hydrolase family 3 protein similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47050.1); similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G47010.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47000.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to Chain A, Beta-D-Glucan Exohydrolase From Barley (GB:1EX1); similar to Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole (GB:1LQ2); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.154372368795949 -1.24773065321266 0.238313828862987 1 0.123017134212097 3.55272967989129 -0.154372368795949 0.154202563811837
AT1G74900_at 3.03466410725175 3.47052185431365 3.36998178951024 3.81669295388768 3.58845439055009 3.30892786769763 3.52207708151469 3.73532353029442 3.31113624049684 3.35012703334302 3.37026186589680 3.48603496472329 3.46860136872306 3.57770931410135 3.22223640659247 3.74283164433539 3.68568824515525 3.66145696602333 3.33306532052789 0.203526172947612 0.198162660526127 0.202201476436275 0.198667082053595 0.197107541658852 0.196096114622523 0.202257029598194 0.201068644868288 0.208759865709818 0.196096114622523 0.202673138760412 0.197340458936835 0.203885245895999 0.196975046662386 0.204155535159426 0.196183266523339 0.204800989228521 0.206915164416195 0.201397524164944 1 1 + 28138471 28139018 28138743.727 28137594 28139042 + gene protein_coding_gene FALSE TRUE AT1G74900.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to Os02g0679200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047736.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98845.1); similar to putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] (GB:AAK71569.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.137888669611201 1.24760697342477 0.238357410840736 1 0.122881808375912 6.90997817774408 0.137888669611201 0.123964645465068
AT1G16490_at 0.94019514933502 1.22585825290396 0.792428191064813 1.42064254609836 1.15295828164316 1.35585433711045 1.35203932129033 1.06167934334864 1.33403907121949 1.47983555228599 1.77172978895675 1.85004017291701 1.80470722922245 1.78119134020412 1.59945154005488 1.66965162614492 1.48447406584527 2.19123875204061 1.74038587711264 0.205554202395284 0.203279032519382 0.211401233301915 0.206975418796338 0.205848069202577 0.216541322802658 0.204011895622106 0.207359505316252 0.214042032186867 0.207384166525109 0.2098309625624 0.208129399321826 0.205966033561699 0.210937176688617 0.203279032519382 0.204718008760565 0.204119515249025 0.209835324983230 0.20347409558919 1 1 - 5629854 5630496 5630152.818 5629648 5630988 - gene protein_coding_gene FALSE TRUE AT1G16490.1 AtMYB58 (myb domain protein 58); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB63 (myb domain protein 63), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G79180.1); similar to Os02g0695200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047809.1); similar to Myb-related protein Zm1 (GB:P20024); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.143250776571794 1.24728021152898 0.238472585299054 1 0.122524324695064 2.80628062683065 0.143250776571794 0.134240947896069
AT1G79250_at 1.07576829664399 0.505331832908559 0.987348521893851 0.859333320355469 1.18949525911181 0.847317577056029 1.15922900984442 1.05006135008285 1.91094493115492 1.17273552648969 1.20594198597783 0.790794796710365 1.23822655595089 0.967978244600847 1.13012887750875 1.10545954358743 0.919026268097575 1.07239925030849 0.958507178009955 0.206112299504901 0.206057365871560 0.203725557747251 0.207791719879726 0.211139511471508 0.214106121198332 0.214634894048639 0.211980531408409 0.211120781887104 0.221055059871748 0.221553210576030 0.203725557747251 0.210500107721270 0.203725557747251 0.204153313295365 0.206006616044137 0.207927115635554 0.216987630453470 0.204527087263645 1 1 - 29815287 29815804 29815565.636 29815027 29817111 - gene protein_coding_gene FALSE TRUE AT1G79250.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G12690.3); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G16440.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE86905.1); similar to viroid symptom modulation protein [Lycopersicon esculentum] (GB:AAF66637.1); similar to protein kinase [Solanum berthaultii] (GB:CAA66616.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.135187695487209 -1.2471982092089 0.238501495870644 1 0.122434623328989 2.15980580543427 -0.135187695487209 0.118739814724560
AT1G70760_at 9.7293365136664 9.66711524465591 9.1336263657254 9.28583886447407 9.87352789791813 9.56212382842306 10.4585967484662 10.2588507280461 9.995069610189 10.1358932278935 10.26047734 10.4697760219446 10.1496821113902 10.3421373793093 10.5036986610665 10.6435728308946 10.3004483600894 10.5088980388589 10.0513035190220 0.079116501932679 0.0752688892450566 0.0829308043279483 0.079970785711538 0.0789080186037183 0.0824854908714585 0.080339246337665 0.0746007294429998 0.0863938315981434 0.0746007294429998 0.0769764014121446 0.0755710235180288 0.0746007294429998 0.084038519175015 0.0761564312440668 0.0751659467871675 0.0826800430029703 0.0803504187515796 0.0774198858012134 1 1|0 +|/ 26690944 26691809 26691239.714 26690892 26692046 + gene protein_coding_gene FALSE TRUE AT1G70760.1 inorganic carbon transport protein-related similar to NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1] (GB:NP_681495.1); similar to Os05g0348100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055267.1) -0.114057339498726 -1.24665022191592 0.238694765678508 1 0.121835296954383 19.9751729215781 -0.114057339498726 0.0700627997696463
AT3G24710_at 2.88318471521769 2.59926704014850 2.91286376485463 2.60237816423372 2.60068391377464 2.3862168656189 2.51638524575818 3.12806434445881 2.92705921293943 2.66373990613507 2.54662983173518 2.77278240915672 3.17924959399696 2.78884450872506 2.48415927374496 2.71225979709743 2.61174355166447 3.04844638490891 3.10170356971553 0.206382462127981 0.200627078959788 0.207757322204814 0.202422568426298 0.206335762034492 0.207899099484980 0.203026756850826 0.206933863777609 0.211539627027466 0.200627078959788 0.210142366827515 0.212711409483161 0.211259587743944 0.205191913464673 0.204196095769093 0.200627078959788 0.203599362417817 0.201690768109722 0.211198884344393 3 3|0 -|/ 9023970 9024334 9024206.9 9023967 9024374 - gene protein_coding_gene FALSE TRUE AT3G24710.1 similar to flavodoxin family protein [Arabidopsis thaliana] (TAIR:AT3G02280.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96847.1); contains domain (Trans)glycosidases (SSF51445); contains domain NADPH FLAVIN OXIDOREDUCTASE (PTHR19384); contains domain no description (G3D.3.20.20.80); contains domain NADPH FAD OXIDOREDUCTASE (PTHR19384:SF10); contains domain no description (G3D.3.40.50.80) -0.142838068329978 -1.24606772059587 0.238900346611806 1 0.121198433757095 5.53638816432916 -0.142838068329978 0.133729718797482
AT3G19870_at 7.1311168448364 7.10870973523456 6.99461026331667 7.20474558722244 6.79001897271535 6.88060426505212 6.62202320680079 6.51124195298317 6.9152434444781 6.42919649812108 6.81445744334166 6.97566771407126 6.31619711233538 7.09312251834775 7.04152056573472 6.83208603345156 6.30372055740636 6.56871239608005 6.61984132897437 0.172912650854880 0.171952106383281 0.188006718856793 0.178728622085259 0.176921351974719 0.181145199714977 0.175317924841011 0.183325849919699 0.184840447545432 0.169353234323335 0.171979194836337 0.178827188048917 0.17361939459492 0.181478137916824 0.178334562439363 0.175406667273543 0.207625013375723 0.172536927464555 0.172002304092408 3 3 + 6910526 6911065 6910751.727 6907487 6911239 + gene protein_coding_gene FALSE TRUE AT3G19870.1 binding similar to Os02g0829400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048606.1); similar to unnamed protein product; gene_id:MPN9.11 unknown protein [Medicago truncatula] (GB:ABE78160.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.106323477925581 1.24585680713402 0.238974819014717 1 0.120967890380589 13.6043568367472 0.106323477925581 0.0441669658333994
AT1G73290_at 1.31404511456418 1.16353522503932 1.03254386040480 1.20215486223332 1.24024436136467 1.0322272493066 0.901046259786321 1.16390472574240 1.83837833417814 0.805113985157552 1.16302938449849 1.22810377803512 1.35129339220307 1.38416315493919 1.07865890991773 0.931211775591962 0.657423160105903 1.11903333612336 1.35618208250831 0.184814670564453 0.179141240986871 0.177837282005766 0.188625654180108 0.183534667387433 0.179407501195976 0.186524642446288 0.181910341657283 0.177250266201099 0.18899108704899 0.186263337156804 0.177250266201099 0.177435331785222 0.182216352145097 0.181979971476910 0.179338637536572 0.180542853533660 0.18148964223122 0.181925819021786 1 1 - 27560081 27561144 27560585.182 27560058 27562434 - gene protein_coding_gene FALSE TRUE AT1G73290.1 SCPL5 (serine carboxypeptidase-like 5); serine carboxypeptidase similar to SCPL3 (serine carboxypeptidase-like 3), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73280.1); similar to SCPL1 (serine carboxypeptidase-like 1), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G36180.1); similar to SCPL2 (serine carboxypeptidase-like 2), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73300.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.113975218571762 -1.24585446814832 0.238975645002765 1 0.120965333862981 2.35488241332596 -0.113975218571762 0.0700362317770685
AT2G27580_at 7.38514491985774 7.68591434527305 7.85513242656811 7.54609828193195 7.80754988214279 7.52969646109056 7.36251461894808 7.42375366835603 7.59174181484252 7.36200964571675 7.64752610142804 7.33275380111558 7.54534313269652 7.45817317821247 7.79611980519538 7.89014759494727 7.67103803639986 7.57489671553452 7.8219658134719 0.197286071727731 0.198102470116419 0.186541593943786 0.188395073970954 0.191379417985816 0.189109312551362 0.193226715125957 0.196436334010352 0.195711702058038 0.18688341070511 0.186169691115336 0.184282648279919 0.184099538045602 0.186207077834519 0.187081383321683 0.181688267355568 0.190487985229856 0.188877898603453 0.185947270163284 2 2 - 11783811 11784147 11783975.273 11783488 11784605 - gene protein_coding_gene FALSE TRUE AT2G27580.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (AtSAP3) (SAP3) [Arabidopsis Thaliana] (GB:Q9ZNU9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT3G52800.1); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.121440706252719 1.24565262379200 0.239046932865293 1 0.120744730637986 15.1776783523718 0.121440706252719 0.0894069958411807
AT1G36756_at 2.12714747963354 1.91701348857532 1.76444018965768 1.75499447531755 1.83712926629887 1.62298986727685 1.85627208845374 1.87454245764141 2.87304551318734 2.31092134258769 2.61359467017348 2.72060734700935 2.38499760256897 2.33428150802912 2.58635570560917 2.21627645749201 3.13691263347482 2.44449811025573 2.53336450532896 0.231592983007438 0.23194106266963 0.226710117406695 0.226993264031592 0.232761881319135 0.225593022726214 0.231554601629025 0.232679435108964 0.229195440820527 0.24175182054953 0.228645103706208 0.232262992488989 0.243773390545751 0.226690685197708 0.223335001789289 0.223335001789289 0.244607766765004 0.232535716814676 0.240913254432993 1 1|0 +|/ 13918593 13918885 13918758.571 13918543 13919028 + gene protein_coding_gene FALSE TRUE AT1G36756.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04273.1) -0.108304355823174 -1.24547798297612 0.239108626740583 1 0.120553880230441 4.40788330978749 -0.108304355823174 0.0520417137800188
AT2G14860_at 1.0977481941098 1.12140595879700 1.09354470239585 0.917920292538355 1.31082022511236 0.962287503515478 1.50298013252059 1.41946522384154 0.998847163264318 1.13264570552749 1.49262316566093 1.91963952110941 1.55034122243298 1.29689163666454 1.90274102903717 1.49346908513358 1.24666214085682 1.29549634201163 1.11820104475925 0.212904165071479 0.213653191546377 0.222687826807313 0.214848898252573 0.213654803091740 0.215239010017536 0.215573210510763 0.212133032334607 0.218012542707097 0.218475464238066 0.21201990025369 0.216638508959135 0.230196210238168 0.216624808096322 0.21412418114012 0.215759471104731 0.226449437011128 0.222864358019925 0.2097016451244 2 2|0 -|/ 6395140 6396429 6395666 6394706 6396710 - gene protein_coding_gene FALSE TRUE AT2G14860.1 peroxisomal membrane protein 22 kDa, putative similar to peroxisomal membrane protein 22 kDa, putative [Arabidopsis thaliana] (TAIR:AT4G33905.1); similar to hypothetical protein DDBDRAFT_0189006 [Dictyostelium discoideum AX4] (GB:XP_635703.1); similar to Os12g0508100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066849.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.113622508459821 1.24522464680896 0.239198143450063 1 0.120277064948385 2.48225369029407 0.113622508459821 0.0691901505698371
AT3G16290_at 7.69233068535855 7.50049859666456 7.27905251109253 6.87834935359164 7.64092639294195 7.36251711394426 7.77194619310186 7.15985152440884 7.4888814103978 7.80469100134728 7.71668831153252 7.7463060141108 7.33267859036904 7.33102095549841 8.1204223237167 7.77181353335283 7.66727147144183 7.72276401168589 7.88682731171274 0.140266547160277 0.138663458731586 0.137725906604967 0.142610730340435 0.138854675776122 0.139894140399703 0.138356005076091 0.137336718735720 0.148040364543196 0.139531026004079 0.142057854708704 0.132919723372808 0.135964925151176 0.132997895405759 0.145891658651067 0.143975345479922 0.149047020077196 0.1476387219364 0.138459812537074 3 0|3 /|- 5521205 5521898 5521546.1 5521077 5525001 - gene protein_coding_gene FALSE TRUE AT3G16290.1 EMB2083 (EMBRYO DEFECTIVE 2083); ATPase/ metallopeptidase similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to Peptidase M41; Ribosomal protein S19/S15; DNA repair protein RadA; L-Aspartase-like [Medicago truncatula] (GB:ABE80934.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.145812331673314 -1.24499131125995 0.23928061679141 1 0.120022140309005 15.1121443260294 -0.145812331673314 0.139471127899295
AT4G05640_at 2.75787283420328 2.84803566817016 3.56509038503215 3.82082276082914 2.08781891351411 2.22779178150968 2.4249696840455 2.19987223426979 3.09607924980089 3.15158972434626 1.86049660284534 2.8558580381567 2.61996939824299 2.54004656752838 1.8470829008316 2.63490210549569 2.82886546811263 2.78358199836294 3.01875061510906 0.230726530142043 0.234023817199333 0.243185806397582 0.235782652845180 0.235104815606807 0.230720232644766 0.230720232644766 0.230720232644766 0.232408134787943 0.239238994264484 0.244046949390025 0.230720232644766 0.230720232644766 0.237721184101783 0.252219092795685 0.236892840691720 0.240541549633979 0.230720232644766 0.230720232644766 4 0|4 /|+ 3023333 3023622 3023556.6 3022681 3023682 + gene protein_coding_gene FALSE TRUE AT4G05640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G41855.1) -0.112381394877976 -1.24491523432889 0.239307511423928 1 0.119939031992478 5.53411274004627 -0.112381394877976 0.0656216463190023
AT2G16510_at 10.4962137404870 10.5395727316694 10.6846027080923 10.7489017637417 10.5728924421845 10.6580031525953 10.6840194225916 11.0697542106683 10.5301601064929 10.5705988623161 10.8795412557006 10.7098502822934 10.8459005788343 10.8309966266148 10.8442198050930 10.5538019968057 10.5138158381478 10.737273618042 10.3413486341173 0.0663000355414281 0.0606326474223791 0.067920804980743 0.0623826276872038 0.0624323644584913 0.0657282626587072 0.0637392134207476 0.0610332921141741 0.065589070126568 0.0606326474223791 0.0634429780360798 0.0622281023169479 0.0649885089879458 0.0623173703823158 0.0636461310810344 0.0606326474223791 0.063649971720353 0.0639666143063122 0.0608918560806555 2 2 - 7167110 7167489 7167337.545 7166711 7167974 - gene protein_coding_gene FALSE TRUE AT2G16510.1 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AVAP4) [Arabidopsis Thaliana] (GB:P59229;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q944R9;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 2) (AVAP2) [Arabidopsis Thaliana] (GB:P59228;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3), ATPase [Arabidopsis thaliana] (TAIR:AT4G38920.1); similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (GB:Q43434); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, V0 complex, proteolipid subunit C, eukaryotic; (InterPro:IPR011555) 0.113716228091035 1.24444622030532 0.239473370518182 1 0.119426751417168 21.2918087887539 0.113716228091035 0.0696638057622461
AT3G51690_at -0.0442143667175828 -0.0887500345124234 0.202695973246750 0.284963048584737 0.51195832387412 0.531056260121896 0.00858201369494682 -0.053398027258961 0.147449963861267 0.653440801412732 -0.113324157048310 0.203196742116256 0.00737432115078844 0.141407321679948 0.238995069566049 0.164508987459689 0.404992545553362 -0.144356080567243 0.207450610500724 0.231850646721612 0.230444939666817 0.233602661800087 0.227724866281366 0.228536095388933 0.24611130817594 0.227724866281366 0.229217968680233 0.230963849842092 0.228240815430840 0.228316055269810 0.233424496222361 0.237627341032902 0.227724866281366 0.227724866281366 0.230756777969607 0.227724866281366 0.23974911063451 0.238582498062332 3 3 - 19187483 19187984 19187758.778 19187353 19189140 - gene protein_coding_gene FALSE TRUE AT3G51690.1 DNA helicase homolog PIF1. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51700.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) 0.101924528484645 1.24439433407838 0.239491724914554 1 0.119370087346229 0.393593216711048 0.101924528484645 0.0196990291252911
AT2G34120_at 2.43895523009674 2.26572540223285 3.03897355609953 2.46739435077540 2.05452745876634 2.64415869221932 2.18475242239488 2.29067201632835 2.46830556593963 2.81033829698253 2.60740011848604 2.52532492264449 2.55239627684044 2.52226921529633 2.70569011670892 2.47915367375385 2.71208244711893 2.71183723168101 2.39879091988935 0.154377758283942 0.149516620300064 0.152477944617376 0.155821938114783 0.152445010485911 0.154526856373395 0.152785394325242 0.151771253568992 0.153267145539734 0.155578088080288 0.152095397627524 0.159496438308539 0.152318252837744 0.150647648397452 0.151017474580492 0.152485109592515 0.154649472791049 0.155395588024967 0.150923837324750 2 2 + 14412420 14412528 14412481.909 14412418 14412630 + gene protein_coding_gene FALSE TRUE AT2G34120.1 cytochrome-c oxidase similar to cytochrome-c oxidase [Arabidopsis thaliana] (TAIR:AT1G32720.1); contains InterPro domain Cytochrome oxidase c, subunit VIb; (InterPro:IPR003213) 0.149555784707180 1.24439108915804 0.239492872820473 1 0.119366543680939 5.00372698007422 0.149555784707180 0.146391901424461
AT2G40860_at 4.03501575801672 3.48622786747648 3.81182539024903 3.817158874676 4.47014213284257 4.18065419987874 4.35800433805648 4.28899150336075 3.4831051445462 3.21903314966604 3.30886150631010 3.19429623759269 3.43759165226814 3.47568846821878 3.68183064130336 3.66303949299307 3.66749560427994 3.50430398642149 3.07873961015503 0.226591943261669 0.222685040925179 0.224805824162104 0.222685040925179 0.232680226795339 0.227668648696441 0.227118806146657 0.239299916726092 0.229955433269549 0.23202347230035 0.222685040925179 0.225371706596835 0.222685040925179 0.222685040925179 0.230152724662949 0.226817154730060 0.238224094190391 0.223368966279508 0.222685040925179 2 2|0 -|/ 17063115 17063935 17063642.444 17060659 17064205 - gene protein_coding_gene FALSE TRUE AT2G40860.1 protein kinase family protein / protein phosphatase 2C ( PP2C) family protein similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31750.1); similar to Serine/threonine protein phosphatase (ISS) [Ostreococcus tauri] (GB:CAL57140.1); similar to Os01g0541900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043271.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.129615548284169 1.24394559658906 0.239650509986859 1 0.118880100732005 7.43196804980086 0.129615548284169 0.108039709132194
AT4G20460_at 1.90912706810294 2.19089927067047 2.27880311299322 2.62752637875055 1.91262366831572 2.17601024008409 1.61562428011048 1.66918321274133 1.72335330672669 2.07946199866905 2.02290246923043 1.52272912299288 1.47162289209691 1.82275540147770 1.99628441030862 1.73983869847064 1.87448705630711 1.52516287402908 1.91539720047064 0.201526691924441 0.200115535051930 0.200265772076909 0.200612362074031 0.194399525620663 0.194462224434404 0.197618698210676 0.203624197450619 0.211388457997155 0.203492748918724 0.195975459696855 0.194399525620663 0.199690161888016 0.197616611165949 0.203325564634407 0.200112657021983 0.206124616219041 0.202944290496513 0.207102257636716 4 4|0 -|/ 11029779 11030480 11030059.8 11029747 11031583 - gene protein_coding_gene FALSE TRUE AT4G20460.1 NAD-dependent epimerase/dehydratase family protein Identical to Putative UDP-arabinose 4-epimerase 3 (EC 5.1.3.5) (UDP-D-xylose 4- epimerase 3) [Arabidopsis Thaliana] (GB:Q9SUN3); similar to MUR4 (MURUS 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G30620.2); similar to DUR (DEFECTIVE UGE IN ROOT), catalytic [Arabidopsis thaliana] (TAIR:AT5G44480.1); similar to Putative UDP-arabinose 4-epimerase 3 (UDP-D-xylose 4-epimerase 3) (GB:Q9SUN3); similar to Putative UDP-arabinose 4-epimerase 2 (UDP-D-xylose 4-epimerase 2) (GB:O64749); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) 0.121717211227486 1.24393870894276 0.239652947830302 1 0.11887258096126 3.87399650442258 0.121717211227486 0.0904605139491649
AT3G48120_at 5.97468882182756 6.12007380780294 6.14723231577668 6.067869577169 6.24782612218115 6.43308859879553 5.70034963225237 5.50683936814602 5.19539522258418 5.28561831142378 4.59701609886473 4.33457085957839 4.58609226768923 4.53906636282359 4.29594916767716 4.83039637164964 5.13375129707238 4.8501621045882 5.30494766622941 0.273898751553940 0.281475720883332 0.282042516421457 0.273898751553940 0.284681178930374 0.278331951910042 0.273984055402312 0.273898751553940 0.273898751553940 0.273898751553940 0.278297831244822 0.273898751553940 0.276809495436002 0.278861920936037 0.285619743409305 0.273898751553940 0.287451781628293 0.27730509379451 0.273898751553940 3 3|0 +|/ 17783640 17785336 17784931.25 17783042 17785724 + gene protein_coding_gene FALSE TRUE AT3G48120.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to At3g48120 [Medicago truncatula] (GB:ABE82374.1) -0.108797627264756 -1.24323987973425 0.239900398276929 1 0.118109773763414 10.9786773469883 -0.108797627264756 0.0545063530508485
AT3G05190_at 1.63126841901808 1.90144170737132 1.69352502002180 2.2254087495181 1.47179816866907 1.96196564410626 1.77327104988319 2.37358577043133 2.27514162257025 2.70821166272138 2.01795661807234 1.95715755125323 1.93304812753419 1.49838915682994 2.34976584199740 2.09446588250513 2.25677796499234 2.22635509202711 1.87198803576735 0.196138870342497 0.203237713188613 0.194872807100203 0.190291848550182 0.192713360884881 0.202380827709625 0.192610767726356 0.196542996866166 0.19998941516651 0.19105525741633 0.194484655488133 0.194130295411969 0.195413479422466 0.191278356848250 0.196490610215968 0.190291848550182 0.196058889032989 0.200996707898195 0.193003511757641 3 0|3 /|+ 1474054 1475035 1474484.222 1471403 1475790 + gene protein_coding_gene FALSE TRUE AT3G05190.1 aminotransferase class IV family protein Identical to Branched-chain-amino-acid aminotransferase-like protein 1 (Atbcat- like) [Arabidopsis Thaliana] (GB:Q8W0Z7;GB:Q9MAA0); similar to aminotransferase class IV family protein [Arabidopsis thaliana] (TAIR:AT5G27410.1); similar to Aminotransferase, class IV [Medicago truncatula] (GB:ABE80609.1); similar to branched-chain amino acid aminotransferase-like protein [Cicer arietinum] (GB:CAD70620.1); similar to branched-chain amino acid aminotransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96064.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544) -0.162545792691017 -1.24313813557470 0.239936442306096 1 0.117998741025588 4.04245971767129 -0.162545792691017 0.169252046308301
AT1G53950_at 1.80139145243587 1.80612424552719 2.20440222502119 1.93649931657693 1.42250525190498 1.92498161904178 1.63558081406358 1.83262261554452 2.04866135447819 2.29442128237338 1.82664876190450 1.44369821630719 1.79129368023811 2.03020302261993 2.31587541304028 1.23869582871260 1.29292752840402 2.4232567945971 2.11888092804786 0.179697133540614 0.178981540246893 0.179338942433211 0.178918925340778 0.182437018604263 0.183599566397244 0.181462856040611 0.176267745527966 0.183634638558475 0.1792385345175 0.186500975467406 0.177219137297608 0.176299522258303 0.179486229886080 0.184227331074727 0.184580649192014 0.180838121552474 0.188819112095197 0.181774081003626 1 1 - 20150132 20151568 20150602.545 20150116 20151656 - gene protein_coding_gene FALSE TRUE AT1G53950.1 ubiquitin family protein similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ14 (ubiquitin 14), protein binding [Arabidopsis thaliana] (TAIR:AT4G02890.3); similar to hypothetical protein DDBDRAFT_0184145 [Dictyostelium discoideum AX4] (GB:XP_629924.1); similar to ubiquitin 3 [Physarum polycephalum] (GB:BAB63444.1); similar to hypothetical protein DDBDRAFT_0218177 [Dictyostelium discoideum AX4] (GB:XP_641560.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.127747813997540 -1.24293630502491 0.240007955981303 1 0.117778504319294 3.79516982286172 -0.127747813997540 0.104279233705531
AT3G18940_at 5.5609633370203 5.34179057813887 5.03155609905745 4.92672861612885 4.98569973536676 5.2207895622061 5.15126787695615 5.10016486869988 3.92529187964425 4.31088403294937 4.32609271585194 4.94663118298453 4.34702859173353 4.81002685813719 4.81470239137447 4.48705804684051 4.83417647672973 4.30974699226624 4.18938149861035 0.215683854949225 0.211808257204596 0.215744484732906 0.212875596669924 0.212719885672845 0.213695257823923 0.21436979814396 0.216075319030344 0.221013200991329 0.217627612848949 0.210202751407369 0.212078445644965 0.213351091755830 0.216590204191592 0.211424337782608 0.210202751407369 0.215144967593408 0.213838753552003 0.210202751407369 3 0|3 /|- 6527096 6527588 6527393 6526964 6529155 - gene protein_coding_gene FALSE TRUE AT3G18940.1 clast3-related similar to Os03g0766900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051385.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99058.1) 0.110113637287217 1.24256843468452 0.240138345891419 1 0.117377152889281 9.54051277289234 0.110113637287217 0.0591695744769736
AT4G16265_at 4.41754694452185 4.75240620935353 4.1723010493804 3.98979454507743 3.60649321197850 2.99967527203312 3.39773241264216 3.91400580236659 3.27362777006902 2.78731750609146 3.75689928138244 4.49631248323503 4.00995517085808 3.64848416348932 3.91794714056484 3.52874485949199 3.59067944326675 3.51331717033182 3.15977229078518 0.258892667532672 0.252187616371172 0.255254649300209 0.255035162669012 0.244106450874752 0.254647872967368 0.244106450874752 0.246289890062900 0.244106450874752 0.251610845276577 0.247666537788211 0.248545767128379 0.251298357769855 0.250121758640808 0.244676687800706 0.244106450874752 0.245154077495487 0.244106450874752 0.246140007418147 4 4|0 -|/ 9202552 9203638 9202834.444 9202371 9204094 - gene protein_coding_gene FALSE TRUE AT4G16265.1 DNA-directed RNA polymerase II, putative similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT3G16980.1); similar to DNA-directed RNA polymerase, subunit C11/M/9 [Medicago truncatula] (GB:ABD32320.1); contains InterPro domain Zinc finger TFIIS-type 2; (InterPro:IPR013138); contains InterPro domain DNA-directed RNA polymerase, subunit C11/M/9; (InterPro:IPR012164); contains InterPro domain DNA-directed RNA polymerase, M/15 kDa subunit; (InterPro:IPR001529); contains InterPro domain Transcription factor TFIIS; (InterPro:IPR001222) 0.152931559579321 1.24225957521736 0.240247863696704 1 0.117040250186661 7.34692692411558 0.152931559579321 0.152857880362437
AT1G04900_at 1.41632591550543 1.56708433540047 1.29559648177848 1.49615055413513 1.31010966791761 1.32495357712497 1.78491847979309 1.51216791540738 1.29537142302025 1.84479565468936 1.67304102163039 1.93258698499230 1.34206880278746 1.58788655881416 1.88980035340080 1.55608036910673 1.36384443719404 1.57908806856474 1.73614307750470 0.180387017658055 0.185484431324948 0.188494644059487 0.182068465083592 0.184523386045805 0.185900681227031 0.184154063673594 0.183376319202525 0.188150054754205 0.185129539442540 0.183795078274608 0.179508628914869 0.191765569558312 0.184725334661673 0.183067366961496 0.190684383564115 0.181350313074685 0.190713794988295 0.189208709324209 1 0|1 /|+ 1386532 1387522 1387033.556 1383840 1387894 + gene protein_coding_gene FALSE TRUE AT1G04900.1 similar to hypothetical protein TTHERM_00446060 [Tetrahymena thermophila SB210] (GB:XP_001023370.1); contains InterPro domain Protein of unknown function DUF185; (InterPro:IPR003788) -0.111654367565493 -1.24209658769774 0.240305673285991 1 0.116862488722547 3.08390651236587 -0.111654367565493 0.0641851440839907
AT2G21900_at 0.99721343840245 0.571404669097075 1.00950403250686 0.835818001062335 0.273857447750658 0.563393072988159 0.0832694864460054 0.468672347967309 0.208147490024084 0.379967959150861 0.306166855356066 0.794163771350879 -0.252551982132766 0.691517135493956 0.777452526382796 0.0907831051413203 0.577223979729956 0.500445281590471 0.343279683913716 0.245522325519066 0.243933329974133 0.240005372588200 0.242261550385223 0.249086542226018 0.241580141695576 0.246158327187964 0.234197440540335 0.252999160834019 0.253531002624875 0.234156954685115 0.239859242284162 0.237727554864918 0.235188620408372 0.236748077306813 0.234156954685115 0.256174947403797 0.260694204381801 0.246408405129681 2 2|0 -|/ 9341416 9343255 9342873.714 9341229 9343302 - gene protein_coding_gene FALSE TRUE AT2G21900.1 WRKY59 (WRKY DNA-binding protein 59); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 59 (WRKY DNA-binding protein 59) (WRKY59) [Arabidopsis Thaliana] (GB:Q9SJ09;GB:Q8VWV5); similar to WRKY71 (WRKY DNA-binding protein 71), transcription factor [Arabidopsis thaliana] (TAIR:AT1G29860.1); similar to putative WRKY transcription factor [Nicotiana tabacum] (GB:ABE77148.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.132844096424996 1.24134646807489 0.240571875440965 1 0.116044594713407 0.973449126266093 0.132844096424996 0.115292101618315
AT3G19200_at 0.800927323561258 0.453503719929698 1.02579885368346 1.09852627551709 0.666531050920184 0.85173397594241 0.702283641280245 0.663564408119163 0.74379501920706 0.89102125638939 0.675748067135749 0.687568648369334 0.514017323113805 0.99751174051135 0.782318871854706 0.875757624116538 1.13635966590755 0.690937134653699 0.836619087910733 0.197219715586124 0.196350086511217 0.192312815925413 0.191083947008451 0.195852079272039 0.193411280207856 0.195091705373645 0.194685542038191 0.196404974554886 0.191859563848214 0.191083947008451 0.197271207865164 0.191083947008451 0.201894640583112 0.191083947008451 0.196398937801668 0.194571340023946 0.192372038043727 0.199094007740297 3 3|0 -|/ 6649635 6649973 6649816.1 6649323 6650083 - gene protein_coding_gene FALSE TRUE AT3G19200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34420.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80518.1) 0.113396681207655 1.24116022030494 0.240638007728733 1 0.115841575203591 1.59227824226597 0.113396681207655 0.0696083728286102
ATCG00050_at 6.95114369052252 8.13606447932651 7.73800221800602 8.25093389428159 8.13379872610583 7.12673215610952 8.64894580917136 8.59459485307096 9.31055116251196 9.3638697042343 9.18679896570308 9.66458683971814 8.67357928656485 9.2342197580876 9.11856335367493 9.14300707091842 8.13666011750045 9.44071973206484 9.1541671547235 0.189351116274768 0.166532699111217 0.167131154496381 0.165815115228688 0.165614281737342 0.177864416644912 0.155547777934359 0.163359309729427 0.167015882757500 0.158378250580753 0.156076795182812 0.170119113129296 0.162155212208707 0.167285703023332 0.16343852973345 0.159656312490307 0.174671766535129 0.158863414772657 0.157273696944397 C 0|C /|- 5089 5257 5167.444 5084 6188 - gene protein_coding_gene FALSE TRUE ATCG00050.1 Homologous to the bacterial ribosomal protein S16 Identical to Chloroplast 30S ribosomal protein S16 (rps16) [Arabidopsis Thaliana] (GB:P56806); similar to SSR16 (ribosomal protein S16), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G34620.1); similar to Chloroplast 30S ribosomal protein S16 (GB:P10359); contains InterPro domain Ribosomal protein S16; (InterPro:IPR000307) -0.235874788012323 -1.24114391604746 0.240643797690644 1 0.115823803797470 17.1230084271671 -0.235874788012323 0.283528468751968
AT3G17790_at 8.20069488278474 8.76784891428522 8.30165278623499 8.66776215920799 7.6912836996385 7.25693902141415 7.0996826947109 7.2520161145982 3.56173297326981 4.91330192449378 1.85660422609295 3.36317913800631 4.23809737126632 3.34610808293702 2.27044127556725 4.55149021024524 5.74980825825964 3.24625348328255 3.58446419406240 0.330673042506488 0.331128269601876 0.335053001665148 0.337613762352964 0.327505439155187 0.335764238277833 0.339887684437887 0.334904188085337 0.339309003255521 0.334900499996141 0.333952098583074 0.327505439155187 0.327505439155187 0.330521318121471 0.331304167334326 0.327505439155187 0.331897464257497 0.336266127850925 0.332480596457985 3 3 + 6090405 6090964 6090701.091 6089612 6091237 + gene protein_coding_gene FALSE TRUE AT3G17790.1 ATACP5 (acid phosphatase 5); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G14700.1); similar to putative acid phosphatase [Lupinus luteus] (GB:CAE85073.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.146368254936179 -1.2407943597071 0.240767958969126 1 0.115442833506103 11.7035254272672 -0.146368254936179 0.141393236698966
AT4G39350_at 8.65587790727153 9.08937911291692 8.41807031107919 8.66576141649236 9.29511192045543 9.0449588363224 9.83940857727124 9.72470933832027 10.1769534109249 9.93409301865648 10.6099178979867 10.4410169825922 10.0126386245251 10.4368136038778 10.2250078186663 10.2259077674420 9.71518432737968 10.3580788368964 9.98371164236368 0.137342667343838 0.123236609955207 0.132312712880971 0.130556735652511 0.121021769191812 0.127919923649542 0.121209670059172 0.119048561476297 0.123234357228003 0.118305964238003 0.119483697992471 0.121032467634043 0.121806559609171 0.124133870385019 0.120740424124259 0.118305964238003 0.132249770596954 0.124286366321967 0.12060139555866 4 4 + 18301313 18301813 18301630.182 18296903 18302186 + gene protein_coding_gene FALSE TRUE AT4G39350.1 CESA2 (CELLULASE SYNTHASE 2); cellulose synthase/ transferase, transferring glycosyl groups Encodes a cellulose synthase catalytic subunit. Identical to Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC 2.4.1.12) (AtCesA-2) (Ath-A) (CESA2) [Arabidopsis Thaliana] (GB:O48947); similar to CESA6 (CELLULASE SYNTHASE 6), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G64740.1); similar to CESA5 (CELLULASE SYNTHASE 5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G09870.1); similar to CESA9 (CELLULASE SYNTHASE 9), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G21770.1); similar to cellulose synthase [Populus tremula x Populus tremuloides] (GB:AAT09898.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25581.1); similar to Zinc finger, RING-type; Cellulose synthase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE92734.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.124941702209282 -1.24050907040135 0.240869330989979 1 0.115131964005875 19.2339880557174 -0.124941702209282 0.0986573482677118
AT1G10420_at 1.87442184394948 1.77866469972423 2.11740639179297 1.7802636902718 1.48831612332118 1.57683709731698 1.76273486042827 1.63992286682431 1.09836113516854 1.43720919610090 1.35880353432709 1.42657632973288 1.50137881973402 1.94628179664719 1.95709844373047 1.53187345297177 1.61027417128385 1.44980686322885 1.51524827927210 0.210606042074612 0.204688155099141 0.207433859000598 0.205415893921461 0.209202139116969 0.203393262036705 0.210296442469095 0.208706655464192 0.206726145902995 0.213129977325392 0.210699248847112 0.203393262036705 0.204065069707799 0.205018103179303 0.204634081980276 0.203393262036705 0.210657598863157 0.209501635393971 0.206568328135978 1 1 - 3427003 3427404 3427213.818 3426978 3427458 - gene protein_coding_gene FALSE TRUE AT1G10420.1 unknown protein 0.112129282110331 1.24047807311658 0.240880347341108 1 0.115098190530147 3.22633822002242 0.112129282110331 0.0660682230136387
AT3G12660_at 1.61795291886405 1.40183062127858 1.39115949603084 1.43024955530361 0.948802338674844 1.40086984792611 1.51668478883988 1.29415452197913 1.43063423707319 1.43847515023450 1.17512602150615 1.31926021770537 1.60940518654413 1.38610171385589 1.87697232749819 1.18891096036697 1.95665438436571 1.36595804932612 1.83086798460604 0.232905927418377 0.236110061024852 0.233451394129455 0.237219038468247 0.232269282231524 0.229321368909165 0.239840161084582 0.227445903504919 0.233520767852284 0.238150113501696 0.231912043422179 0.227445903504919 0.230687786981889 0.231135565657896 0.240691358572645 0.227445903504919 0.229185442557465 0.232097685745688 0.229845293721089 3 3 + 4019244 4019781 4019487.455 4019067 4019834 + gene protein_coding_gene FALSE TRUE AT3G12660.1 fasciclin-like arabinogalactan family protein fasciclin-like arabinogalactan-protein, family (FLA14) Identical to Fasciclin-like arabinogalactan protein 14 precursor (FLA14) [Arabidopsis Thaliana] (GB:Q9LTW9); similar to fasciclin-like arabinogalactan family protein [Arabidopsis thaliana] (TAIR:AT2G24450.1); similar to Os06g0656800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058255.1); similar to putative fasciclin-like arabinogalactan protein [Salicornia europaea] (GB:BAE75863.1); similar to Os02g0461500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046792.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.123372959790870 -1.24043432549004 0.240895895818739 1 0.115050525812617 2.90094187692079 -0.123372959790870 0.0951205208323093
AT1G63240_at 5.89318063866332 6.28063048101304 5.41355974177892 5.16120675223918 5.90872661035958 6.2867686905276 5.90342738732844 5.87363587699195 5.33383101361444 5.82921806996814 6.79235370944285 6.56585826532634 5.83700642580165 6.28969836671232 6.27314083130598 6.02082303889578 5.60548095106676 6.25111384209151 5.80258041827892 0.212429717282658 0.218659376543654 0.204986300000070 0.206667335403806 0.215675296969191 0.202837834983312 0.203763729418265 0.209314460557680 0.211187286748826 0.205409738583785 0.20868138053228 0.204867642307103 0.202871302442503 0.202837834983312 0.208429691846044 0.206292785092863 0.228638821692227 0.216104343869510 0.202837834983312 1 1 - 23459883 23460423 23460106.273 23459686 23462326 - gene protein_coding_gene FALSE TRUE AT1G63240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to glutamic acid-rich protein cNBL1700 [Trichinella spiralis] (GB:AAM19760.1) 0.127035723801849 1.23956537280385 0.241204900220888 1 0.114104023513439 11.7699641537549 0.127035723801849 0.103486509556627
AT3G29390_at 7.23471279462477 6.25392635705063 7.20947876623389 7.0192572242827 7.74406347969544 6.86685940946992 6.78695610204215 6.09410366910532 6.50950776183984 7.2019620572925 6.65123203179184 7.08654067411721 7.50477234631576 6.65590486938595 7.04016290567961 7.75879076080319 6.68202895602125 6.83716310582395 7.90635464959413 0.219834651489950 0.215717326500589 0.217934980028012 0.212936940071329 0.222162207288779 0.219207596978711 0.218979547457994 0.218922291867667 0.224225842195382 0.212823278166311 0.222186477932259 0.211761170926719 0.215844589888733 0.227866618264933 0.215331181049545 0.211761170926719 0.21735428052445 0.216363611526473 0.215203422831764 3 3|0 +|/ 11293857 11295726 11294692.1 11290850 11296011 + gene protein_coding_gene FALSE TRUE AT3G29390.1 RIK (RS2-INTERACTING KH PROTEIN) Nuclear localized K-homology containing protein that interacts with AS1. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to ROUGH SHEATH2-interacting KH-domain protein [Zea mays] (GB:AAY24682.1); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.219311477940817 1.23940725176784 0.241261163199189 1 0.113931843206466 14.0176776982220 0.219311477940817 0.259446847863598
AT2G30410_at 8.39529776344244 8.36904137907484 8.24740935550531 8.15322228543661 8.64819273960451 8.42183853718405 8.52117038596423 8.38851577665185 8.42423653078415 8.41878798358092 8.7709009927559 8.91615982368052 8.44504796639915 8.86960992838396 8.8759372636548 8.5871313288117 8.45595301642634 8.72996293208957 8.48260059834156 0.120334450354147 0.109899616311916 0.112913869314536 0.118554407480462 0.110960725862367 0.108675821894239 0.108523086900318 0.115908485077056 0.122031474195482 0.117024450826162 0.110368544582396 0.110070599929596 0.1146003438791 0.107261882758592 0.116456083607235 0.110513344680106 0.116231015010069 0.111405117264958 0.11259885457697 2 2|0 +|/ 12966940 12967604 12967193.8 12966366 12967887 + gene protein_coding_gene FALSE TRUE AT2G30410.1 KIS (KIESEL); unfolded protein binding mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A Identical to Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1- chaperonin cofactor A homolog) [Arabidopsis Thaliana] (GB:O04350;GB:Q949R2); similar to putative tubulin folding cofactor A [Oryza sativa (japonica cultivar-group)] (GB:BAD22013.1); similar to Os02g0816500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048513.1); contains InterPro domain Tubulin binding cofactor A; (InterPro:IPR004226) 0.106811136052826 1.23921629668500 0.241329123326113 1 0.113723930869536 16.9671924999050 0.106811136052826 0.0484534739911172
AT2G23620_at 2.20946336472825 2.68465063522553 2.47945750077317 2.41114382179896 2.30535307305328 2.52662807249737 2.2323488670733 2.28847212404413 2.51427450328631 2.65528126306659 2.68675133889641 2.11923426586611 1.9945306135724 2.15221186369813 2.05452050370270 2.22210971778021 2.59655988251026 2.11229375331117 2.51920405365851 0.182909317862673 0.192779335105169 0.187783309258461 0.190298012147702 0.185630850971410 0.182271251378583 0.184231723013776 0.187876034702532 0.200861648767727 0.187674999079896 0.185170967781243 0.190382079694880 0.191323762889732 0.184376115844862 0.193467355681943 0.185719175538596 0.189061215075682 0.194163913232245 0.188782596179163 2 2|0 -|/ 10054580 10056073 10055564.8 10054459 10056371 - gene protein_coding_gene FALSE TRUE AT2G23620.1 esterase, putative similar to ACL (ACETONE-CYANOHYDRIN LYASE), hydrolase [Arabidopsis thaliana] (TAIR:AT2G23600.1); similar to salicylic acid-binding protein 2 [Nicotiana tabacum] (GB:AAR87711.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.121865789161867 -1.23882429789038 0.241468682306558 1 0.113297195199327 4.79478789860974 -0.121865789161867 0.0919931875943995
AT1G26795_at 0.848069235093248 1.33294146726264 1.20762214050031 1.63368751558826 1.02361269653282 0.846804609220228 1.33707281535354 1.36100849052577 1.29709470848076 1.92303155861448 1.53647531022896 0.874566070867511 1.37544008297397 0.985234509923429 1.27823819404964 1.5855512981547 1.22939353562834 1.37040697107779 1.28955770141981 0.259330996971547 0.252694500657895 0.261160441043764 0.249314468647268 0.253687137077504 0.268945976807619 0.264095861481508 0.263336150028219 0.262661942457566 0.270449664643176 0.260043163696693 0.249314468647268 0.259494369241325 0.255966125812087 0.249625635817237 0.258950720995749 0.255231191145284 0.256363620135520 0.257305697721459 1 1 + 9276443 9276831 9276597.875 9276368 9276941 + gene protein_coding_gene FALSE TRUE AT1G26795.1 self-incompatibility protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26796.1); similar to Plant self-incompatibility S1 [Medicago truncatula] (GB:ABE83730.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) -0.132828002245185 -1.23844868784017 0.241602467441417 1 0.112888393348404 2.59017298931863 -0.132828002245185 0.115890665732687
AT4G20440_at 7.51010883516313 7.69949375168758 7.14041013674334 7.36110139046073 7.2483318905421 7.09894743180119 6.92318286247959 7.86811534828303 6.37847056123462 6.42955257977012 6.72283360448791 7.03628623845404 7.01842133088289 6.81365620497668 7.47560647240931 6.7744764786303 6.5928824352901 6.68567239488778 6.01337155024246 0.208241131300208 0.212371331742311 0.212237270261545 0.209935076474576 0.213308961918031 0.224496049387210 0.215286485074659 0.215672341159198 0.222477974637613 0.209047818034763 0.207633684465526 0.211475432959136 0.211085334980569 0.219877276452649 0.209229872644042 0.207633684465526 0.208968923906298 0.211607331631728 0.213509434131719 4 4 - 11022859 11023414 11023188.182 11022086 11023766 - gene protein_coding_gene FALSE TRUE AT4G20440.1|AT4G20440.2|AT4G20440.3 SMB similar to small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidopsis thaliana] (TAIR:AT5G44500.2); similar to Small nuclear ribonucleoprotein-associated protein B' (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') (GB:Q9N1Q0); similar to small nuclear ribonucleoprotein polypeptide B/B' isoform B' [Bos taurus] (GB:NP_001029903.1); similar to snRNP-associated polypeptide N (GB:AAA42059.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.164076838785076 1.23773094276889 0.241858280232069 1 0.112107475435387 13.9381002686041 0.164076838785076 0.173036007106922
AT2G42750_at 10.3794846343811 10.43417779075 10.2761585903769 10.5178372461937 11.2242374607577 10.9716511712207 11.2592386683105 11.1001298428239 11.2668414196902 11.6180941325607 11.2481892575358 11.1557772643888 11.5243279550178 11.3810132494815 10.8798738954145 11.8120403877776 11.4493351783502 10.8258701687608 11.5046874752330 0.0932070016301637 0.0878307533421943 0.089643911751229 0.0928075302913957 0.0920016195528822 0.0879259269626929 0.0921736215299903 0.0897589053886664 0.0942195161564454 0.090067125876421 0.0878307533421943 0.0878307533421943 0.0878307533421943 0.0878307533421943 0.0945341583404585 0.0889492033372584 0.0942740414280536 0.0882154922548879 0.0878307533421943 2 2|0 +|/ 17801263 17802471 17801949.333 17800384 17802757 + gene protein_coding_gene FALSE TRUE AT2G42750.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23240.1); similar to 4Fe-4S ferredoxin, iron-sulfur binding; Heat shock protein DnaJ [Medicago truncatula] (GB:ABE80753.1); similar to Os01g0730500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044143.1); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain 3Fe-4S ferredoxin; (InterPro:IPR001080); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.112220436583085 -1.23752273222047 0.241932529637559 1 0.111881001177006 22.1442449733112 -0.112220436583085 0.0671388236361268
AT2G11910_at 7.99000695321746 8.26058075552994 7.9243171532313 7.8578023508084 8.25038670644758 8.25737373655764 8.149365817709 8.37439487265653 7.15540865794095 7.74375099462062 7.43723937300824 7.56169465011357 7.83919400287087 7.46384268070142 7.47301857772698 7.45342381095667 7.66121939266729 7.36582864591571 7.99647958221018 0.161577323955411 0.161090433124459 0.168589482085893 0.166893308757433 0.162951426099824 0.155045888726558 0.168120186731180 0.171924623760305 0.222812111185709 0.166499995848332 0.176021398878231 0.168086346875327 0.158906342336642 0.174862949503412 0.173289782574965 0.161035500004361 0.172201193785568 0.181895967332634 0.155045888726558 2 2|0 -|/ 4813086 4814217 4813819.25 4812767 4814401 - gene protein_coding_gene FALSE TRUE AT2G11910.1|AT2G11910.2 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93307.1) -0.110532108097913 -1.23742721827788 0.241966596736294 1 0.111777118334605 15.7149347366042 -0.110532108097913 0.0619915757758525
AT2G12880_at 1.46828174874615 1.59799486011274 1.56187062522899 1.62065818194066 1.02893410660415 1.23600894849715 1.14554253922624 1.83557827333933 1.38817094953963 1.45624921144313 1.18913505759562 1.19373677076549 1.32119839274743 1.62967135533352 1.0757882992876 1.12928248908408 1.24228448108945 1.46978182765506 1.37988143054305 0.173952200427812 0.17555396658763 0.176445514678031 0.179953483971096 0.172588878629581 0.174889445671342 0.172902133952721 0.175462961988261 0.182862755487275 0.185634351200968 0.172836854866828 0.182128355007045 0.190926302528357 0.175782432027842 0.177240436402463 0.176564493373808 0.176207252499792 0.183322243240330 0.179379409946505 2 2 + 5298605 5298915 5298778.364 5298605 5298964 + gene protein_coding_gene FALSE TRUE AT2G12880.1 zinc knuckle (CCHC-type) family protein similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT3G42860.1); similar to hypothetical protein CIMG_07760 [Coccidioides immitis RS] (GB:XP_001240597.1); similar to PREDICTED: similar to zinc finger protein [Strongylocentrotus purpuratus] (GB:XP_001177915.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.138361043051101 -1.23736885429367 0.241987415401759 1 0.111713643410847 2.78158884281362 -0.138361043051101 0.127087505580750
AT1G73250_at 4.82224258108756 5.00482703478689 4.37532219028321 4.48784925176842 4.49395241238877 4.70298868210619 3.89153042152454 4.52977340382456 4.12704726988442 4.33481519472883 4.08565684273733 4.29739617516156 4.06296514260722 4.25349346212355 3.86908178264842 3.88541875243889 3.72945600342137 4.19708379372634 4.35416896502613 0.203747980946333 0.207797916468089 0.218057870991505 0.209306471422567 0.217494611124473 0.205878484864100 0.208908083170228 0.209628029305321 0.209340169586859 0.215451963974444 0.204471026092081 0.204592864049981 0.216676536066855 0.210724755101477 0.215854711514379 0.205270819390971 0.210021371039005 0.209934170661643 0.215750724184883 1 1 - 27548941 27549442 27549208 27548667 27550096 - gene protein_coding_gene FALSE TRUE AT1G73250.1 ATFX/GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1); GDP-L-fucose synthase encodes a bifunctional 3, 5-epimerase-4-reductase in L-fucose synthesis and converts GDP-D-mannose to GDP-L-fucose in vitro along with MUR1 (GDP-D-mannose 4,6-dehydratase). It is expressed in all tissues examined, but most abundantly in roots and flowers. Identical to GDP-L-fucose synthase 1 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D-mannose- 3, 5-epimerase-4-reductase 1) (AtGER1) (AtFX) (GER1) [Arabidopsis Thaliana] (GB:O49213); similar to GER2, catalytic [Arabidopsis thaliana] (TAIR:AT1G17890.1); similar to Os06g0652400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058235.1); similar to GDP-fucose synthetase [Methanosarcina barkeri str. fusaro] (GB:YP_303606.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.135753354178806 -1.23728634845626 0.242016848017652 1 0.111623916274088 8.69835048267354 -0.135753354178806 0.122006568100770
AT1G79730_at 7.17437803480085 7.02009609155127 6.86789986591649 6.70054803083213 7.42150113482951 6.4788349554154 6.98911455580182 6.59193744816255 7.0615153493191 7.09395888510046 6.68266650518257 6.82530526672103 7.0373991280498 6.85105819596317 6.53840068164655 7.14138802790037 6.72335330107127 6.90326301174777 7.14178159015214 0.195959544691521 0.188178094268283 0.195907217784783 0.186586884151554 0.188119418462205 0.212057694738711 0.188418823568321 0.185743990852516 0.200999558438787 0.189127064531035 0.190702000090886 0.189916016251092 0.187130501024001 0.193767658730521 0.183763665166637 0.184333070758493 0.191851729116647 0.19571957115165 0.189918430783723 1 1|0 -|/ 30005698 30007360 30006434.222 30005431 30008898 - gene protein_coding_gene FALSE TRUE AT1G79730.1 ELF7 (EARLY FLOWERING 7) Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to hypothetical protein DDBDRAFT_0190242 [Dictyostelium discoideum AX4] (GB:XP_645948.1); similar to Os08g0157100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061029.1); contains InterPro domain RNA polymerase II associated, Paf1; (InterPro:IPR007133) -0.168958272951333 -1.23699876599952 0.242119460868493 1 0.111311197540016 13.8740085344850 -0.168958272951333 0.181350944998234
AT1G52820_at 1.08109426811765 0.792944647295363 0.740656672075866 0.865161490080551 1.31603588039029 0.901708375003574 1.13585419366747 0.866337828552583 1.45785794859531 1.28557925519957 1.14373393239489 1.19504554591225 1.41391947807528 0.827748903642108 1.36989424878595 1.20838111396646 1.23814133631819 1.00959819078688 1.49895612528776 0.200172929354393 0.205276833210318 0.205829617200774 0.203304722337932 0.202088138431239 0.200172929354393 0.204404081962174 0.202094117522233 0.209830236886996 0.210803272997052 0.211716595768937 0.20479514535424 0.210658046842828 0.211765637192175 0.205710606032335 0.208084604478411 0.216888415000616 0.210800505050124 0.208633855630759 1 1|0 +|/ 19673334 19673898 19673665.222 19672851 19674095 + gene protein_coding_gene FALSE TRUE AT1G52820.1 2-oxoglutarate-dependent dioxygenase, putative similar to AOP1 (2-oxoglutarate?dependent dioxygenase 1.1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03070.1); similar to Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD33293.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.125745197989830 -1.23657904408177 0.242269285384728 1 0.110854885308352 2.25744364611265 -0.125745197989830 0.101327607531036
AT1G48220_at 1.44835484208798 1.56848943518958 1.16981256625451 1.41219303125849 1.14694936854934 1.53861305842550 1.17495664502854 1.32962770380989 2.00330937619667 1.60641899708923 1.46560089854951 1.26705744864484 1.38991700800333 1.32310821505912 1.82084534247367 1.61998654162712 1.44208486145621 1.36361494470018 1.30074843517279 0.232826539922597 0.229967743421661 0.234610249019412 0.230209626850348 0.223693362135235 0.223693362135235 0.224116801749427 0.223693362135235 0.223693362135235 0.228226864230251 0.226120658431744 0.224585822011452 0.232424101740967 0.228960917950670 0.223693362135235 0.223693362135235 0.226789120635731 0.223693362135235 0.223693362135235 1 1|0 +|/ 17807547 17808576 17808145.5 17806532 17808623 + gene protein_coding_gene FALSE TRUE AT1G48220.1 serine/threonine protein kinase, putative similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G48210.2); similar to Pto kinase interactor 1 [Lycopersicon esculentum] (GB:AAC61805.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.119381922831180 -1.23634349679567 0.242353399289478 1 0.11059885334867 2.89780083651738 -0.119381922831180 0.0866145408499483
AT4G17050_at 9.09898149407768 9.293127480133 9.77330042509701 9.51990743917929 9.98561023062806 9.73727111630538 9.71651809954135 9.8320010725321 9.23287641422695 9.47237435413675 9.74124479803183 9.44925886379284 9.97426978356495 8.05682811047528 8.5982659227732 9.24939659563793 9.5812530818172 9.45472055570188 9.206389064044 0.175354775830123 0.183973780218717 0.191472253808508 0.198365139819175 0.175354775830123 0.180891069575873 0.175354775830123 0.175354775830123 0.202331964051353 0.175354775830123 0.204441787955260 0.175354775830123 0.175354775830123 0.363289724932689 0.220001485380423 0.189182603285133 0.201279001685339 0.196282411206862 0.179610687649398 4 4 + 9591248 9591627 9591398.5 9589586 9592606 + gene protein_coding_gene FALSE TRUE AT4G17050.1 transcription factor similar to protein of unknown function DUF861, cupin_3 [Deinococcus geothermalis DSM 11300] (GB:YP_594116.1); similar to Os07g0495000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059692.1); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin 2, conserved barrel; (InterPro:IPR013096) 0.114070018034941 1.23626635624589 0.242380951268053 1 0.110515011948219 18.9031069987419 0.114070018034941 0.0727878082708041
AT1G22210_at 2.40039342632064 2.63958733115849 2.70657410372515 2.97819766870560 1.64939213633724 2.28848253954200 1.78130320530294 2.55452350654276 2.81294455565148 2.26241993851752 1.85021185765444 2.21267358875372 2.43205489139069 2.1020764452751 1.68318660116901 2.21487209674465 2.50340385186194 2.75168923554 2.79073102100073 0.196859455068931 0.196859455068931 0.205664740341409 0.201553086024628 0.205540959766015 0.200760343129937 0.214796787272130 0.200884928269417 0.205094537921054 0.200831635252653 0.20630362138373 0.201556421596494 0.196859455068931 0.202219009931811 0.210537148487741 0.199066349668027 0.212287372684509 0.201534342034807 0.201213777927474 1 1|0 +|/ 7842378 7843597 7842868 7841507 7844045 + gene protein_coding_gene FALSE TRUE AT1G22210.1 trehalose-6-phosphate phosphatase, putative similar to ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE) [Arabidopsis thaliana] (TAIR:AT1G78090.1); similar to Os02g0753000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048143.1); similar to Os08g0409100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061780.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) -0.170775511297462 -1.23611665972844 0.242434424946601 1 0.110352322920458 4.79520819442365 -0.170775511297462 0.184552820487400
AT1G30910_at 7.89320978761522 7.72230598190935 7.55804693744193 7.43353202787811 8.1951361515118 7.76792928372149 8.51360903208729 8.11461074726111 7.59104385388818 8.00003170666385 7.9404322319524 7.68284468030996 7.60957611356291 7.91451621481587 7.86586943204552 8.03160580364993 7.9239819781834 7.8441133193412 7.76839803758401 0.165163222188047 0.154326382368429 0.153099663223137 0.151047496530878 0.153701610813087 0.148142316358348 0.153977744232983 0.155098207022339 0.158031933371118 0.154304053606538 0.151412439099436 0.151388505578456 0.152223458276074 0.158349573238531 0.154702582076855 0.151978234523549 0.165522205240496 0.155769384288726 0.161935416139998 1 1|0 +|/ 11001774 11002752 11002264.571 11000864 11002917 + gene protein_coding_gene FALSE TRUE AT1G30910.1 molybdenum cofactor sulfurase family protein similar to molybdenum cofactor sulfurase family protein [Arabidopsis thaliana] (TAIR:AT5G44720.1); similar to molybdenum cofactor sulfurase-like protein 1 [Oryza sativa (japonica cultivar-group)] (GB:ABH88162.1); similar to Os09g0560700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063929.1); contains InterPro domain MOSC, N-terminal beta barrel; (InterPro:IPR005303); contains InterPro domain MOSC; (InterPro:IPR005302) -0.128573257362971 -1.23604068087077 0.242461569276347 1 0.110269755209515 15.7188518292339 -0.128573257362971 0.107575073663861
AT2G19130_at 8.46982927761689 8.79362139345596 8.80389143898227 8.72122981244213 8.65988951292425 8.53009186124797 7.01151453772065 7.28567541646133 7.97564506260618 7.83156958781335 7.3583256044066 7.4116468658759 7.18640872268888 7.28698758154352 7.1144475007135 7.06346761437475 7.30687243026856 7.36570721670226 7.64814389538603 0.177657128588254 0.181133478893978 0.183287744722945 0.179316602282290 0.186664796448953 0.186709239133169 0.182399016080495 0.183346970024775 0.18577237888831 0.187651960290292 0.192933712102775 0.180173140169014 0.181802947404487 0.183732498282660 0.193382803370291 0.185820118541997 0.191729605666786 0.197427999315348 0.180848487443511 2 2 + 8302786 8303333 8303115.727 8300764 8303357 + gene protein_coding_gene FALSE TRUE AT2G19130.1 S-locus lectin protein kinase family protein similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to S-domain receptor-like protein kinase [Zea mays] (GB:CAA09029.1); similar to putative S-receptor kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD82381.1); similar to putative S-receptor kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83324.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain N/apple PAN; (InterPro:IPR003014); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.115947796777671 1.23541129451803 0.242686518730322 1 0.109585931936387 15.8245608016932 0.115947796777671 0.078102293547518
AT1G53530_at 5.38162765257328 5.22868437334557 4.68695766124503 4.84339663463463 5.1806601931245 5.14543051848117 4.76478969948785 5.1613020464676 4.78875221321821 4.025183567515 4.29454211340306 4.38138040097512 3.77352320486236 4.44925281024511 4.65608458768446 4.09852016040155 4.32332164661936 4.47752472181406 4.29321528713743 0.272292499642016 0.267859392495414 0.268177932710796 0.281306951290669 0.266758565079194 0.266758565079194 0.279577473260035 0.277935077925804 0.279417769428396 0.273587653881365 0.269884343958623 0.269013050030539 0.271314966892202 0.282890722074278 0.269446223683011 0.275973639781106 0.281832270684336 0.269993737259067 0.266758565079194 1 1|0 +|/ 19981983 19983265 19982278.222 19981814 19983752 + gene protein_coding_gene FALSE TRUE AT1G53530.1|AT1G53530.2 signal peptidase I family protein similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G29960.1); similar to Os11g0620000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068291.1); similar to signal peptidase I family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94772.2); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) -0.116135670651741 -1.23537505933381 0.242699474675334 1 0.109546570477152 9.3870156282737 -0.116135670651741 0.0786072061691174
AT2G45430_at 1.94480599585567 1.75658887308861 1.75965814855282 2.21759593346078 1.80219982179496 2.15995712500572 1.96049086618736 2.11681224636488 1.55514917057712 1.58879944960565 1.94446386017974 1.87308518689138 1.7670388719761 1.99911029959892 2.00420307191622 1.74247109801219 1.83146236865605 1.77362265326146 1.80202483345455 0.232947510842682 0.228532601771881 0.237238606569630 0.229081360189913 0.233147543869394 0.234676207428326 0.240598649607565 0.227120294026161 0.233683977407168 0.240333002374969 0.244187524009142 0.232218803084686 0.238716864888343 0.255140729317474 0.229147125282733 0.228255408468669 0.235352486431038 0.228234718429794 0.234063699078882 2 2 + 18735308 18735847 18735561.364 18734635 18736009 + gene protein_coding_gene FALSE TRUE AT2G45430.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G22810.1); similar to hypothetical protein 23.t00073 [Brassica oleracea] (GB:ABD65635.1); similar to Os06g0136900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056730.1); similar to Os02g0448000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046754.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.129226310130921 1.23533636388396 0.242713310905270 1 0.10950453742265 3.72255862338416 0.129226310130921 0.109114960682472
AT3G22890_at 12.0502805661406 12.3543442550651 12.3506310691037 12.3099173525889 12.1678976093209 12.0352412385459 12.5452442686560 12.6623446960338 12.1201842966986 12.6162285083826 12.3597573791722 12.0998585253732 12.3455915368453 12.5373959860232 11.8204036691550 12.3359865995410 12.0626159746169 12.4896709551668 12.1321070352837 0.075510199285884 0.0689022731430798 0.0758212827873174 0.0718588174751334 0.0708704411626547 0.0763103352075412 0.0745760053150977 0.0704554843625859 0.0759334907826653 0.0707392090398796 0.071034906640509 0.0712342806465498 0.0689022731430798 0.070772642212092 0.0743227399319848 0.0689022731430798 0.080580318740211 0.0722023089926613 0.069172398359696 3 3|0 +|/ 8113936 8114690 8114305.2 8112730 8114997 + gene protein_coding_gene FALSE TRUE AT3G22890.1 APS1 (ATP sulfurylase 3) encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arabidopsis thaliana] (TAIR:AT5G43780.1); similar to APS2 (ATP SULFURYLASE PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G19920.1); similar to ATP sulphurylase [Brassica napus] (GB:AAB53100.1); similar to ATP sulfurylase [Brassica juncea] (GB:CAA11417.1); similar to ATP sulfurylase (GB:AAA21570.1); contains InterPro domain ATP-sulfurylase; (InterPro:IPR002650) -0.110114082151124 -1.23522005313415 0.242754903646430 1 0.109378200320930 24.5824459777777 -0.110114082151124 0.0612873907766301
AT1G70520_at 9.5210911382901 9.52865619470662 9.40200590828018 9.32987896681376 9.67283257673378 9.49091771827388 8.89557484551614 8.96080801156273 9.1728384408181 8.48270162316694 8.89575598332732 9.10140899268391 8.84168420138462 8.99793338121372 8.41426689803886 8.8041845216109 8.7246294928724 8.59500728768024 8.8557105844525 0.0979256481123397 0.0941417912177085 0.100245493289261 0.0961114375989669 0.098246995708903 0.0977715943920066 0.0997238167427948 0.0963357895014716 0.102888276301402 0.109294530889031 0.097417839804047 0.0955952841964254 0.0948745418196432 0.0989839588590285 0.0978594665321476 0.0957496922262695 0.0982128628532062 0.100348265337061 0.101390615135946 1 1|0 -|/ 26588588 26589256 26588904.333 26588392 26591082 - gene protein_coding_gene FALSE TRUE AT1G70520.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70530.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93633.2); similar to Os05g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054549.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.103575770189409 1.23486889254262 0.242880513448321 1 0.108996821557968 18.1671918671875 0.103575770189409 0.0357213950105387
AT4G25430_at 0.929708800405238 1.05024669241924 0.457876943616622 0.844221666515382 0.788444693126636 0.863930654808341 1.02464912204444 1.01883152195055 1.25553457172838 1.06326692737751 1.46865021927552 0.93452162598046 1.28702210258620 1.18587767759854 1.53911387262073 0.995444940199924 1.56826546447045 1.23694034643775 1.39077913426895 0.216846896065508 0.217752105224616 0.226524291573167 0.218135087445485 0.217148139063273 0.226163637239849 0.218369292121505 0.216471013918025 0.216471013918025 0.219764222677514 0.218068972490739 0.216471013918025 0.230490111077930 0.216471013918025 0.216471013918025 0.221951959937678 0.222534096540512 0.220856434153827 0.219193681566833 4 4 + 12999516 13000192 12999938.273 12998600 13000221 + gene protein_coding_gene FALSE TRUE AT4G25430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51850.1) -0.11339394566677 -1.23485008401542 0.242887242712227 1 0.108976396759852 2.12899196632971 -0.11339394566677 0.0712522192062067
AT2G01630_at 3.55355397526449 3.71299506991245 3.34663458053372 3.29261261779719 4.31719568778396 4.03815771531379 4.38866151445711 4.11688313644259 4.22724909811621 4.15116347019158 5.15623249107088 4.85535800944727 4.29874034049132 4.81411819767671 4.25364173188 4.43419607530987 3.97438668440399 4.73896044161244 4.05059859268346 0.263432871118137 0.248206398207043 0.257545716374904 0.249604192847509 0.242323993825475 0.251270805893089 0.243917439018675 0.245178573729195 0.255203494689996 0.259135508197490 0.253480564655753 0.246357673795458 0.243902617705607 0.241468668441007 0.241468668441007 0.252099226157298 0.255216963049945 0.243792457669426 0.24338214559239 2 2|0 -|/ 279550 280269 279836.556 279281 282122 - gene protein_coding_gene FALSE TRUE AT2G01630.1|AT2G01630.2 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative Identical to Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 3) ((1->3)-beta-glucanase 3) (Beta- 1,3-endoglucanase 3) (Beta-1,3-glucanase 3) [Arabidopsis Thaliana] (GB:Q9ZU91); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G66250.1); similar to Os03g0221500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049413.1); similar to beta-1,3-glucanase [Camellia sinensis] (GB:AAK85402.2); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490)|Identical to Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 3) ((1->3)-beta-glucanase 3) (Beta- 1,3-endoglucanase 3) (Beta-1,3-glucanase 3) [Arabidopsis Thaliana] (GB:Q9ZU91); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G66250.1); similar to beta-1,3-glucanase [Camellia sinensis] (GB:AAK85402.2); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.114163626247071 1.23476370030031 0.242918150766223 1 0.108882592776333 8.20019077059665 0.114163626247071 0.0734342355214931
AT2G33980_at 0.795704498454085 1.04439560733506 1.04586511686645 0.906689111100005 1.32303774400538 1.21949586747807 1.17480275815209 1.13515359960168 0.89690932988524 0.949678512534805 1.1784061255398 1.26020610125130 1.06660425771469 1.03841510050927 1.13915323019019 0.898212596987142 1.11417949378364 0.793726680685774 0.949866233068118 0.192031821825955 0.188682746354582 0.189906047364892 0.195520939755114 0.190288373110181 0.18960994567561 0.195478754919817 0.190990208390729 0.193732520534822 0.201521990944687 0.191700431444138 0.195537043048772 0.188682746354582 0.189773797914833 0.193298327751675 0.191800319017969 0.193581110272210 0.190634223290136 0.191461555274475 2 2|0 -|/ 14365303 14366395 14365719 14356843 14366919 - gene protein_coding_gene FALSE TRUE AT2G33980.1 ATNUDT22 (Arabidopsis thaliana Nudix hydrolase homolog 22); hydrolase Identical to Nudix hydrolase 22, chloroplast precursor (EC 3.6.1.-) (AtNUDT22) (NUDT22) [Arabidopsis Thaliana] (GB:O22951;GB:Q9C5F2); similar to ATNUDT15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15), hydrolase [Arabidopsis thaliana] (TAIR:AT1G28960.5); similar to Os08g0375900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061674.1); similar to NUDIX hydrolase [Pseudomonas fluorescens PfO-1] (GB:YP_346742.1); similar to Os05g0209400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054910.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.107609716906710 1.23472880129026 0.242930638511633 1 0.108844697345043 2.07727519128849 0.107609716906710 0.0529191440071388
AT1G51680_at 9.09321805339196 9.30154390895076 9.67608438680159 9.63938690590155 9.47820923672102 9.06630817123881 10.4029945309025 10.3817688301745 9.56977021582305 10.1511493369061 10.1381127310193 10.2914029753396 10.1939221515791 9.8663726127768 10.1945915089291 10.2007453014288 9.74172894395663 9.8998551084944 10.1868328783172 0.118643346574770 0.119897286249214 0.123732533052498 0.118006963976734 0.121478492631732 0.131499554571309 0.120802758287289 0.127781605684533 0.130787661686950 0.119218192180009 0.117370565298768 0.117369993279588 0.119424626873087 0.126966322788520 0.11660387942822 0.120301129654435 0.133819430755493 0.126043417971715 0.114184264370575 1 1 - 19162737 19163633 19163352.727 19162420 19165220 - gene protein_coding_gene FALSE TRUE AT1G51680.1|AT1G51680.2|AT1G51680.3 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase|4CL1 (4-COUMARATE:COA LIGASE 1) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. Identical to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1) (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL3 (4-coumarate:CoA ligase 3), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G65060.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); similar to 4-coumarate:coA ligase 2 [Rubus idaeus] (GB:AAF91309.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|Identical to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1) (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); similar to 4-coumarate:CoA ligase 3 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK58908.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|Identical to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1) (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); similar to 4-coumarate:CoA ligase 3 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK58908.1); similar to 4-coumarate:coA ligase 2 [Rubus idaeus] (GB:AAF91309.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.116646774673747 -1.23427044114319 0.243094699163332 1 0.108347055487737 19.6474853665300 -0.116646774673747 0.0802159022044846
AT3G48680_at 9.19624868891879 9.58061044077243 9.24987825446172 9.23810760686313 9.3119355652426 9.2386633635636 8.88071701617113 9.22828705867298 9.31332534271552 9.1208601135177 9.13008242277476 8.9226210705548 9.24720544200103 8.86555656088507 8.51377439833087 8.9053303177014 8.4590442735304 9.03884650705591 9.06121678583268 0.155523000125737 0.1608419341345 0.163471622993101 0.167010900211341 0.161753545313725 0.170475981105815 0.163766005067130 0.168881738154975 0.178533849431424 0.157479469374517 0.162727539178054 0.156147009759188 0.158226059811832 0.161061054860926 0.165300581516654 0.156762228571206 0.185620719245109 0.171512398389302 0.160102593039512 3 3|0 +|/ 18046279 18047690 18047324.6 18045996 18048021 + gene protein_coding_gene FALSE TRUE AT3G48680.1 GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); acyltransferase Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. Identical to Unknown mitochondrial protein At3g48680 [Arabidopsis Thaliana] (GB:Q9SMN1); similar to GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1), carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT5G63510.1); similar to mitochondrial NADH:ubiquinone oxidoreductase 29 kDa subunit [Chlamydomonas reinhardtii] (GB:AAS48196.1); similar to Os02g0508000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046924.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.120823030092714 -1.23423149174553 0.243108644403481 1 0.108304774359946 18.2657768517298 -0.120823030092714 0.0905931255122484
AT1G69310_at 4.27018377802322 4.62573171614283 2.78183160458269 3.3991867197284 3.94221543379049 4.66757004635614 3.14059212207383 3.99159389387379 2.46022248121917 3.178657330343 2.59019916865537 2.05146387398289 2.82366439598906 2.59872342670309 2.53990368866311 2.73756807310762 3.59628670379999 3.15374810230413 2.90964811611065 0.245954196619188 0.244588585716946 0.232194300812361 0.232305136566785 0.235033502738709 0.241691195961006 0.226649839797521 0.235214156901826 0.238082277326286 0.233884505578627 0.227951969750269 0.230784627896236 0.226649839797521 0.229080662388664 0.230453500231394 0.231496809062773 0.232294744910592 0.231400890880092 0.230717759865399 1 1|0 -|/ 26059785 26061274 26060214.4 26057971 26061768 - gene protein_coding_gene FALSE TRUE AT1G69310.1|AT1G69310.2 WRKY57 (WRKY DNA-binding protein 57); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 57 (WRKY DNA-binding protein 57) (WRKY57) [Arabidopsis Thaliana] (GB:Q9C983;GB:Q9C798); similar to WRKY48 (WRKY DNA-binding protein 48), transcription factor [Arabidopsis thaliana] (TAIR:AT5G49520.1); similar to Os03g0758000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051329.1); similar to TPA: TPA_inf: WRKY transcription factor 29 [Oryza sativa (japonica cultivar-group)] (GB:DAA05094.1); similar to Os07g0111400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058737.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.198694528243803 -1.23417827958521 0.243127697247006 1 0.108247012016912 6.65784015850889 -0.198694528243803 0.229444968590747
AT1G71160_at 1.36243905128342 1.62389268639835 1.82713292802056 1.73600778749649 1.83059218422016 1.69100799347652 1.71079831228038 1.82562381656801 2.09233523143132 1.68264488158060 1.76881354638970 1.69348775152762 2.17963476095277 1.96163939167855 1.87672834633787 1.64056082164546 1.50466645257382 1.91353913757798 1.44621908836236 0.173954490368308 0.168469239913179 0.176307482661389 0.170685971504839 0.168469239913179 0.180083943678795 0.170223108178395 0.178947253084925 0.170446393044231 0.170470660965958 0.172553505492256 0.172404280684906 0.174573983544704 0.173123260748653 0.170474654089991 0.170950644621501 0.177857106142164 0.170529126687005 0.169844728871359 1 1 - 26832491 26832962 26832701.182 26832363 26833870 - gene protein_coding_gene FALSE TRUE AT1G71160.1 beta-ketoacyl-CoA synthase family protein Identical to 3-ketoacyl-CoA synthase 7 (EC 2.3.1.-) (KCS-7) (Very-long-chain fatty acid condensing enzyme 7) (VLCFA condensing enzyme 7) (KCS7) [Arabidopsis Thaliana] (GB:Q9C992); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G25450.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.108740399482469 1.23363884699496 0.243320911078139 1 0.107661555686898 3.47982859990643 0.108740399482469 0.0572207901475967
AT3G49960_at 1.01607854071642 1.41977561809824 1.25642035824205 1.00327454545610 0.975219484502804 0.93423251248633 1.09311166450582 1.29410439704347 1.65962627369077 1.24748588059268 1.29870089898279 1.20983346441129 1.27748638496493 1.17447353026798 1.74560319741099 1.37804279796485 1.59264770053770 1.22940722238859 1.41478476069878 0.15553912645812 0.156990054645516 0.160908026145658 0.159976833489764 0.15553912645812 0.158763415499346 0.158854869982599 0.156264215331926 0.165601501314883 0.168141877693656 0.155951386809738 0.165369688993269 0.156842735585193 0.166278845231834 0.165277590545092 0.160158316300806 0.161272717419342 0.168146682920538 0.163937028391762 3 3 - 18535373 18536091 18535677.818 18535069 18536672 - gene protein_coding_gene FALSE TRUE AT3G49960.1 peroxidase, putative Identical to Peroxidase 35 precursor (EC 1.11.1.7) (Atperox P35) (ATP21a) (PER35) [Arabidopsis Thaliana] (GB:Q96510); similar to peroxidase 73 (PER73) (P73) (PRXR11) [Arabidopsis thaliana] (TAIR:AT5G67400.1); similar to peroxidase 1 [Artemisia annua] (GB:AAO45182.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.120419367648551 -1.23359496989373 0.243336632385180 1 0.107613943311565 2.52598049243651 -0.120419367648551 0.0897772075620822
AT2G30530_at 6.85104934743597 6.51256405441658 7.18085096715982 6.7775903752674 7.23888944732164 7.18607826502756 6.78859555519132 6.36470920250278 5.74873576401708 6.21474004881546 5.96219388696686 5.83037712563295 5.81708192180749 6.29073110744572 5.83508438048034 5.9349812682716 5.94962998277695 5.48040397955176 6.30115204107739 0.187400753657232 0.187170770323773 0.195221275724263 0.190474178378177 0.191161742443344 0.200864787278048 0.186527369131336 0.188384404009281 0.192984924080424 0.192959530319559 0.186042989972117 0.186042989972117 0.194348980097115 0.186042989972117 0.191208930477114 0.186042989972117 0.190297534861495 0.190576826955596 0.189974897917405 2 2|0 +|/ 13017165 13017787 13017564.25 13015993 13018140 + gene protein_coding_gene FALSE TRUE AT2G30530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01970.1); similar to Os05g0315200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055171.1); similar to Os11g0118800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065600.1); similar to expressed protein-like protein [Sorghum bicolor] (GB:AAO16693.1) 0.132986947893756 1.23334223152611 0.243427205229968 1 0.107339713452484 12.8504257724171 0.132986947893756 0.117328006707442
AT4G26370_at 8.46617700428286 8.34975994722607 7.33093488088969 7.40372542987897 8.60490605484309 7.97209867099142 7.4084262495902 7.11783929940575 6.76300011224582 7.14331156557178 6.91746973831155 7.69332821361315 6.88351082645081 7.12338622854129 8.2974498045684 7.02834562529783 7.0836103610432 6.94534646657784 6.9961183854916 0.20763565040819 0.208180441330168 0.210454641375311 0.212524069616877 0.205155744432263 0.216264334891589 0.205449187162560 0.208115809823125 0.212269935285401 0.207510672456877 0.209794529767062 0.204629143382920 0.210602311918433 0.207155885669085 0.20912619616165 0.204500080285583 0.227871700715735 0.206160699707331 0.215503928296619 4 4|0 -|/ 13334201 13335426 13334855 13333733 13336239 - gene protein_coding_gene FALSE TRUE AT4G26370.1|AT4G26370.2 antitermination NusB domain-containing protein similar to hypothetical protein M3E9.200 [Sorghum bicolor] (GB:AAL73975.1); similar to Os03g0656900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050811.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027)|similar to hypothetical protein M3E9.200 [Sorghum bicolor] (GB:AAL73975.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027) 0.135722427152676 1.23323898347019 0.243464213607858 1 0.107227697621598 14.9387497400486 0.135722427152676 0.122824608102368
AT3G09780_at 2.60272550175672 2.7402600012344 2.28000789054550 2.64020091542107 1.8964197307078 2.64026352073608 2.13650695135631 2.31926531995686 2.5912166555978 2.70152682401598 2.48252515211452 2.64630834357106 2.47490728172744 2.87064431544764 2.51872150316596 2.35896447426739 1.99491571503908 2.66598606787526 2.85160864007366 0.204664947977748 0.203030887341515 0.204157690329165 0.210818043679131 0.208465528947104 0.207023459412392 0.207649746421589 0.204450008882767 0.217147239212663 0.213327198737535 0.206391777537377 0.206795504737285 0.205202587157043 0.214284413858765 0.214075946615219 0.20522933909025 0.216532376170896 0.207901441883313 0.210536258133618 3 3 - 3000885 3001413 3001122.727 3000764 3003184 - gene protein_coding_gene FALSE TRUE AT3G09780.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G39180.1); similar to Os03g0637800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050726.1); similar to Putative receptor protein kinase CRINKLY4 precursor (GB:O24585); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain TNFR/CD27/30/40/95 cysteine-rich region; (InterPro:IPR001368) -0.149314431234115 -1.23312994998105 0.243503300625719 1 0.107109412541005 5.01515905223777 -0.149314431234115 0.148399692800905
AT4G14070_at 8.93844535620178 8.95433827620432 9.2345975539381 9.13548972354391 9.5785930580231 8.95003213594324 9.2994681961365 8.85495647401985 9.0431020733291 9.03880790076048 9.23082069192371 8.89202932821502 8.75723397919673 9.05122205259677 8.90661219078362 9.14457508586032 9.1694214241618 8.77776854220726 8.68026453708371 0.132101835202352 0.130742098010287 0.127593850993537 0.127593850993537 0.130557704179058 0.146023427572943 0.133893015806867 0.133930589856031 0.131487867904191 0.133261620403190 0.129269207758935 0.130473506012448 0.142983148410436 0.132921939689479 0.143521658997845 0.136216719355031 0.135333754747978 0.135877498148189 0.134804045362406 4 4|0 -|/ 8112315 8113205 8112730.444 8111957 8118155 - gene protein_coding_gene FALSE TRUE AT4G14070.1 AAE15 (ACYL-ACTIVATING ENZYME 15); acyl-ACP synthetase Plastidic acyl activating enzyme involved in the elongation of exogenous medium-chain fatty acids to 16- and 18-carbon fatty acids. similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G23790.1); similar to AMP-binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99869.1); similar to AMP-binding protein [Brassica napus] (GB:CAA96521.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE90455.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.141680808515934 1.23308474133257 0.243519508785868 1 0.107060370150816 18.0742077212143 0.141680808515934 0.134354903384724
AT4G34320_at 2.30845607818836 2.51863533163809 1.87559954479762 1.92025696283087 1.77647744704846 1.75689501653403 2.07317602433977 2.13839201863653 2.00197449940015 2.18193494111581 2.08867510361170 2.2050530816123 2.11418349035977 2.24410815900229 2.37937660903784 1.82312423980042 2.53183991331857 2.42714980186222 1.83840113009721 0.182701759944491 0.184333581390316 0.186409393722487 0.188510267339654 0.185070430858312 0.203465826331800 0.191383350041841 0.190349064607741 0.191972457613090 0.185507799614398 0.185762571082348 0.194599324413494 0.193999764342154 0.187689963796073 0.190559681681093 0.184292398804243 0.186762519050240 0.186247263472122 0.188360030854299 4 4 + 16423257 16423782 16423518.091 16422170 16423952 + gene protein_coding_gene FALSE TRUE AT4G34320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34330.1); similar to Os03g0199100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049283.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58139.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) -0.104052838721678 -1.23267472927202 0.243666545435058 1 0.106615648957311 4.16304888135006 -0.104052838721678 0.0390069208677912
AT4G00950_at 4.26599416893744 4.25136936033458 3.72494764835877 3.8271140687665 4.75478637584932 3.97336473380225 5.31925411569123 5.03416202313411 5.22095261201179 5.01956370544679 6.20043914541635 5.32135021447896 5.93533170858175 6.01840864128076 5.02058443129354 5.06615441919904 5.33903181280391 5.45760358958582 5.33557954553858 0.24891445426558 0.234030374969625 0.247113892456299 0.246026679823099 0.233645873382123 0.250220934872371 0.234663479380797 0.235881782029091 0.249389138360582 0.235862636520452 0.236209788514402 0.231107281522281 0.241386056236976 0.248850696460298 0.23556433654697 0.229758854619558 0.241085749940234 0.229379938746430 0.231018399697954 4 4|0 -|/ 406315 406768 406593.5 405673 407142 - gene protein_coding_gene FALSE TRUE AT4G00950.1 MEE47 (maternal effect embryo arrest 47); transcription factor Identical to Protein At4g00950 [Arabidopsis Thaliana] (GB:Q9M160;GB:O23083) -0.147405334666252 -1.23264184490399 0.243678341361470 1 0.106579985506306 9.76232153669048 -0.147405334666252 0.145051312610875
AT1G51200_at 11.5075627128014 11.5270084531581 11.6344183143956 11.6444533734382 11.7568218153800 11.8217251641776 11.3384140110024 11.649360728545 11.2717846355642 11.3275348552282 11.5488107461173 11.2408039316057 11.7005734713694 11.4451010641078 11.1891267702286 11.3492366212119 11.4498714806861 11.3579353931544 11.6093159583321 0.0548937577111892 0.0541823933425616 0.0550611257057484 0.0555888212474434 0.0543058907355713 0.0563306568156148 0.0537396749748805 0.0576861798133406 0.0640230737397506 0.0570260835880684 0.0600712720779498 0.0543879562923093 0.0551191945425347 0.0592767520776298 0.0574968334617403 0.0544261333430597 0.0587212430563168 0.0553917145489052 0.0553194474074904 1 1 + 18989387 18989805 18989624.182 18988102 18990236 + gene protein_coding_gene FALSE TRUE AT1G51200.1|AT1G51200.2 zinc finger (AN1-like) family protein|DNA binding / zinc ion binding Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 2 (AtSAP2) (SAP2) [Arabidopsis Thaliana] (GB:Q8H0X0;GB:Q9SYC3); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G36320.1); similar to unknown [Prunus armeniaca] (GB:AAD38146.1); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.108036071119897 1.232611585285 0.243689196170899 1 0.106547169241619 23.0165010305381 0.108036071119897 0.0551007639521011
AT2G01930_at 5.93151066790683 5.8574238389642 5.64998234840279 5.32230839478909 6.65461943509698 6.71960847931375 5.91275488709582 5.79217562513888 6.5854277394999 6.18821999077584 6.7734214854441 6.79964210879867 6.20613455605539 6.89279163195298 6.15978862805568 6.73723286819272 6.04822390288092 5.77519099134985 6.47594051325059 0.169010487126065 0.159680421674697 0.166435653342844 0.168559013429889 0.168483969228327 0.171255459871791 0.165679802236005 0.162065615027002 0.167563972448193 0.164702123299922 0.164498694719256 0.159995598033405 0.16215440800578 0.165927289768168 0.167619100554661 0.159680421674697 0.17168295727741 0.170940984882012 0.159680421674697 2 2 - 427490 427915 427646.273 427116 428838 - gene protein_coding_gene FALSE TRUE AT2G01930.1|AT2G01930.2 ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor|ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1) BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant. similar to BPC2 (BASIC PENTACYSTEINE 2) [Arabidopsis thaliana] (TAIR:AT1G14685.1); similar to GAGA-binding transcriptional activator [Cardamine pratensis] (GB:ABG57059.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.110343633353366 1.23251376709172 0.243724288422150 1 0.106441090405816 12.4003393026386 0.110343633353366 0.0627837961444839
AT1G04830_at 6.67898881190819 6.6013712933787 6.49693064794656 6.35707761709184 7.45195610962778 6.82871587067711 6.9750700083003 6.9418233547096 7.10930112927076 6.43327952587189 6.49949735993747 6.10906860745954 6.74275602616543 6.6149361433324 6.44593959630661 6.6044022004805 6.68330310847078 6.57125228921904 6.7924945818873 0.200461969159134 0.193011035786595 0.196012839461809 0.199471333627262 0.194782317060881 0.202142337084264 0.189094090685686 0.189094090685686 0.200699297644526 0.192496379353949 0.192873839297001 0.201145931056435 0.189094090685686 0.196877906056140 0.191152928207011 0.193696366018891 0.207859588672540 0.196183896237303 0.195073620851648 1 1|0 -|/ 1359142 1360248 1359642.556 1358916 1361980 - gene protein_coding_gene FALSE TRUE AT1G04830.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G13730.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE83596.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) -0.13005365083011 -1.23240831696699 0.243762123167529 1 0.106326742060491 13.4476181285874 -0.13005365083011 0.111498393996610
AT1G64940_at 4.55131674264989 4.40024678156003 5.13476409387601 4.67248028875452 4.04550635394481 4.63255647306793 4.40461512200782 4.49574161587893 4.80799686736693 4.81180473733894 5.02732429855788 4.77809554519213 4.84359303056111 4.87663509169703 5.42357925724566 4.79231328689747 5.28874720959918 4.93991099040525 4.99918713456704 0.15655196899513 0.157548852431296 0.159297591276918 0.15709017204283 0.162474713838668 0.155539737889396 0.158120399322311 0.152772726287228 0.158107077158884 0.153873744902827 0.154002181183010 0.154888777987148 0.160358584994510 0.154438298403396 0.159956974855947 0.156778710492250 0.164014431059318 0.159873394317813 0.158940701229832 1 1 + 24128452 24128872 24128562.818 24127452 24128987 + gene protein_coding_gene FALSE TRUE AT1G64940.1 CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6); oxygen binding member of CYP89A similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to CYP89A7 (cytochrome P450, family 87, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.140812664615908 1.23237919626384 0.243772572296309 1 0.106295165325896 9.47678897656438 0.140812664615908 0.132865002303927
AT1G54690_at 6.60737576935232 6.78457845993148 6.78661541161748 6.63645604252132 6.84460426620302 6.38760311117636 6.89528530097885 6.2186090419214 6.18174917884712 6.30475910980625 6.24890215372595 7.04182441791579 6.21293502943437 6.16563517156144 7.17705448019886 6.68963731582001 6.23593081428899 6.49000536678739 6.33350047307461 0.168386849702858 0.17083242753449 0.172164417481948 0.174351834322582 0.170590280911719 0.171609516519095 0.180026752435285 0.167108123648992 0.187514532352233 0.163830919111807 0.169005946001694 0.170801268657022 0.169474849813581 0.164753079937051 0.168489065512235 0.163437752604616 0.175235890308956 0.188824406733407 0.168873543590160 1 1|0 -|/ 20418276 20418839 20418558.8 20417983 20418954 - gene protein_coding_gene FALSE TRUE AT1G54690.1 histone H2A, putative Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT1G08880.1); similar to Histone H2AX (GB:O65759); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.148380952320403 1.23222595591494 0.243827564119113 1 0.106129009768165 13.0481793492757 0.148380952320403 0.146912039805166
AT1G72390_at 5.88208237299225 6.25977660852072 5.8013612329418 6.20974636683006 5.99386134499103 6.21937513735993 5.23056646223863 5.25917799917739 4.91873753874812 5.45483867662949 4.96345249573666 5.0318593729773 5.4302862990131 4.85418559603113 4.85746914030906 5.21887644990628 4.88285816862673 4.73206919905963 5.05169283324645 0.222190774120522 0.222513277647209 0.227643259283762 0.228914260240485 0.235256140422909 0.238244724545307 0.220819310522307 0.224575668288007 0.222015488524588 0.227159655954017 0.220961054120679 0.221345434334495 0.223669751383162 0.225671166960843 0.220987220474866 0.223702088035843 0.222029591182280 0.224922696716498 0.226683002639595 1 1 + 27254337 27254776 27254618.818 27250615 27255238 + gene protein_coding_gene FALSE TRUE AT1G72390.1 similar to transcription initiation factor IID (TFIID) subunit A family protein [Arabidopsis thaliana] (TAIR:AT1G17440.2); similar to Conserved hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52107.1) 0.126405450232295 1.23115675247883 0.244211535378902 1 0.104970115870087 10.9260626605059 0.126405450232295 0.103992238578326
AT1G34190_at 9.06226787131816 9.27354578561465 9.38672590712067 9.19905750359854 9.43741127150829 9.08219213656913 8.87210800624536 8.85390346159683 8.75190758708707 8.26043414656423 8.36452294202513 8.33041591733372 8.56168168546918 8.49595245670274 7.969265671257 8.43199165136728 8.19562020144096 8.49208323451081 8.14151122088198 0.140079657455192 0.143910789347223 0.137087694939615 0.145236106443316 0.138592661520550 0.139779318218593 0.136826292232877 0.143474713755979 0.142705615603485 0.134552590070310 0.139996359210089 0.133778722237881 0.137133198098867 0.137983151434862 0.147029182321410 0.136849933700288 0.149387077179694 0.140627008895473 0.133818729821838 1 1|0 +|/ 12453065 12453843 12453508.3 12451429 12454120 + gene protein_coding_gene FALSE TRUE AT1G34190.1 ANAC017 (Arabidopsis NAC domain containing protein 17); transcription factor similar to ANAC016 (Arabidopsis NAC domain containing protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34180.1); similar to nam-like protein 7 [Petunia x hybrida] (GB:AAM34770.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.115732246003835 1.23105159936169 0.244249324035145 1 0.104856181908286 17.5158061787087 0.115732246003835 0.0786151788921535
AT3G13570_at 7.98735160186909 7.68911928772225 7.6602011115075 7.39111276007835 7.62058415088357 7.50606052190954 7.7841790305038 8.1255045425706 7.5030497481125 7.12326842745657 7.30809133389644 7.5188691227837 7.31550755859436 7.74865307300428 7.38214320356729 7.36089816107347 7.4224229912138 7.16286937995106 7.25469179044339 0.187573099820164 0.185294535517730 0.189554218177502 0.198008206444205 0.189344288770238 0.199134703878773 0.189320621328406 0.194973429456870 0.185294535517730 0.192204851888792 0.192619799501214 0.185294535517730 0.191476652660286 0.196261265168918 0.195666258484243 0.185294535517730 0.190906243137710 0.196151951085521 0.197793497774333 3 3 - 4429621 4431060 4429955.909 4429305 4432166 - gene protein_coding_gene FALSE TRUE AT3G13570.1 SCL30a (SC35-like splicing factor 30a); RNA binding encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. similar to SR33 (SC35-like splicing factor 33), RNA binding [Arabidopsis thaliana] (TAIR:AT1G55310.2); similar to RNA-binding re (GB:ABE89154.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.121643557615981 -1.23070729932843 0.244373087229648 1 0.104483181081224 15.0685650467213 -0.121643557615981 0.093348486584137
AT3G11250_at 5.62410700055915 5.78381768338415 5.35057045030114 5.55136634015296 5.59776015868282 5.33899908231535 5.94321608598398 6.23657470303313 4.58644828929954 4.86868267131683 4.79048550458762 5.44038191313675 4.62195833519029 4.71541452216119 5.59453726680371 4.70918114167908 4.63239036443526 4.18414097564210 4.44077106091681 0.247392236429405 0.246425991262981 0.241894144945375 0.247474120125933 0.246316771001481 0.253417798000998 0.244387938038625 0.243330088339696 0.253797723564863 0.241275309881495 0.240344453613868 0.240044506112527 0.241059523362395 0.251901598736204 0.243066529786385 0.249659874762406 0.251404292514545 0.244141995949441 0.243113911766746 3 3 + 3522051 3522724 3522338.909 3521363 3523007 + gene protein_coding_gene FALSE TRUE AT3G11250.1 60S acidic ribosomal protein P0 (RPP0C) Identical to 60S acidic ribosomal protein P0-3 (RPP0C) [Arabidopsis Thaliana] (GB:P57691;GB:Q8LAM3); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to 60S acidic ribosomal protein PO [Euphorbia esula] (GB:AAF34767.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.116580473966796 -1.23055137786286 0.244429151798693 1 0.104314287278375 10.4123157347844 -0.116580473966796 0.080956123033512
AT1G34320_at 6.7986294835215 6.73530138323253 6.68970491847725 6.49523914529147 7.27482030034307 6.38196601832266 6.8497552128995 6.61767903992716 6.08292466909892 6.29819768114354 6.82832805110061 6.83473187446379 6.69321058897571 7.15433420775953 6.24828767519486 6.59348309353792 6.04050790913605 5.94597654975507 6.18088264960676 0.221402630517776 0.207262724434990 0.207572756978893 0.215234383237098 0.204990349575698 0.22217561357774 0.212677587284395 0.218206164480126 0.227741604402274 0.209491705018225 0.213133280470489 0.204990349575698 0.205931012495188 0.207787414836719 0.223360042441119 0.211881146881506 0.229244709976455 0.218630424093585 0.210691519112793 1 1 + 12523528 12523991 12523729.909 12520157 12524348 + gene protein_coding_gene FALSE TRUE AT1G34320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08660.1); similar to Os05g0430300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055623.1); similar to Trp repressor/replication initiator [Medicago truncatula] (GB:ABE83667.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82727.1); contains InterPro domain Protein of unknown function DUF668; (InterPro:IPR007700) 0.157556904752072 1.23046762231912 0.244459271976411 1 0.104223569949747 13.0952331845970 0.157556904752072 0.163522968398349
AT1G76210_at 1.37096652773545 1.13533863225628 1.25613220338011 1.27818141798327 1.16770037722630 1.21572221067156 1.15963531069247 1.3263208780488 1.29367296241313 1.10081179357542 1.42021168615221 1.11942810992137 1.38668339388752 1.46584440292251 1.52058105849051 1.26801049418640 1.19345185456522 1.07170738610146 0.826931686776448 0.208621929572809 0.204999907725290 0.21001039532074 0.203952403164078 0.203952403164078 0.209117469388592 0.206552436995504 0.210681964088483 0.212342308273292 0.219020485514779 0.206779065199499 0.213647697001766 0.214101389937320 0.204994680701815 0.209677785627985 0.204282295056043 0.208997049453767 0.206916621584541 0.209627331914277 1 1 - 28600096 28600573 28600311.727 28599844 28600875 - gene protein_coding_gene FALSE TRUE AT1G76210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20520.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) 0.106651516244397 1.23036226868973 0.244497163485502 1 0.104109465747832 2.42852233434931 0.106651516244397 0.0507781569626326
AT1G66650_at 0.964608450042528 1.11508666342215 1.21039154054986 0.640823583527674 0.82253427194833 0.859292286749324 1.38490425689788 0.683479826985386 1.60426121943686 1.65860524376309 1.13866431763205 1.24872903770441 1.80342207933648 1.57696050775686 1.03287429995183 1.43234416632751 0.873219358542047 1.26832134945765 1.09473395670226 0.201789018432016 0.197935471178044 0.200661992474329 0.196407609165924 0.194330867041615 0.199718921555094 0.194330867041615 0.196812604665302 0.1979609247048 0.210340765307743 0.200396533024832 0.194330867041615 0.203226258737786 0.204486744843341 0.198823769452957 0.198767776383086 0.206636146114779 0.199000773678603 0.198034532631333 1 1 - 24863847 24864235 24864033.818 24863776 24865484 - gene protein_coding_gene FALSE TRUE AT1G66650.1 seven in absentia (SINA) protein, putative similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT5G37930.1); similar to SIAH2 protein [Brassica napus var. napus] (GB:CAB89184.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) -0.154737981177661 -1.23032290269923 0.244511323074454 1 0.104066831900397 2.33481529146006 -0.154737981177661 0.158644858787222
AT1G75520_at 1.27995849914777 1.01756710216601 1.57925860573132 1.27650538419256 1.07468659214208 1.14931868489622 1.00943045451061 0.953312997578589 1.46678309343046 0.940197464958806 0.923886333926783 1.40729788021629 1.42538880180356 1.53413569263399 1.27523834110490 1.14231669629287 1.50546491006562 1.07637868184653 1.38883738708730 0.250679799140909 0.254456342342808 0.256940020850684 0.254236373713644 0.265097534637146 0.252009414771238 0.258354438406056 0.267268575750242 0.253578635366637 0.264790027781023 0.257656648493154 0.258962312923134 0.255122134493756 0.255344831561552 0.255657606064042 0.253474833346825 0.260999665341429 0.257354824325900 0.255399583446123 1 1 - 28355440 28356375 28355850.636 28355223 28357156 - gene protein_coding_gene FALSE TRUE AT1G75520.1 SRS5 (SHI-RELATED SEQUENCE 5) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. similar to SRS7 (SHI-RELATED SEQUENCE 7) [Arabidopsis thaliana] (TAIR:AT1G19790.2); similar to hypothetical protein [Thellun (GB:ABB45842.1); contains InterPro domain Zinc finger, LRP1-type; (InterPro:IPR006510); contains InterPro domain LRP1, C-terminal; (InterPro:IPR006511); contains InterPro domain Protein of unknown function DUF702; (InterPro:IPR007818) 0.112932911066964 1.2300669408183 0.244603406270442 1 0.103789646545875 2.4432728229099 0.112932911066964 0.0711900438699054
AT3G48540_at 1.93311462596725 1.69584896119113 2.38371925444253 2.44451075298055 2.05579082620581 2.02272369346956 2.61948706265054 1.87200087666025 2.15580869254359 2.53875089679830 2.28153030733647 2.37496891093412 2.29782509728383 2.60106988938068 2.34661578124340 2.46510944698801 2.28256532169907 2.05933784718984 2.05704213623291 0.255571895975213 0.250272210116919 0.269381041302737 0.254851735271956 0.250272210116919 0.250272210116919 0.290660105291436 0.250272210116919 0.271988398575572 0.258456245661935 0.259706138288369 0.251632328408444 0.250272210116919 0.26918124922283 0.250272210116919 0.250272210116919 0.250272210116919 0.250272210116919 0.257429780629932 3 3 - 18000960 18002185 18001562.333 18000783 18003000 - gene protein_coding_gene FALSE TRUE AT3G48540.1 cytidine/deoxycytidylate deaminase family protein similar to Os01g0765000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044347.1); similar to Deoxycytidylate deaminase (ISS) [Ostreococcus tauri] (GB:CAL57775.1); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125) 0.142333583444658 1.23004470481174 0.244611407064998 1 0.103765568810167 4.42298037358688 0.142333583444658 0.136243556882569
AT1G47540_at 1.10517951807094 0.894056021489226 1.1787434855146 0.81145157494343 0.792282506175144 1.26522159589888 0.830681694017832 0.958484149902205 0.965263321018258 0.847057274393642 1.17650317467304 1.18999495904355 1.18551778274616 1.19243955302296 1.04566934881253 0.799735233557085 0.955018025071312 1.39022480295188 0.952402445900047 0.207033367504246 0.203296340664464 0.202998850815341 0.209105129501390 0.201522998474253 0.205308644062852 0.200548812896213 0.208357333100124 0.204412670302388 0.209828829651533 0.205357317388131 0.200548812896213 0.201113898785557 0.202973650248453 0.204583514037086 0.201400772991436 0.207400307251400 0.203539785023432 0.210265942500019 1 1 - 17458150 17458531 17458274.818 17457973 17458607 - gene protein_coding_gene FALSE TRUE AT1G47540.1|AT1G47540.2 trypsin inhibitor, putative Identical to Putative trypsin inhibitor At1g47540 precursor [Arabidopsis Thaliana] (GB:Q42330;GB:Q9SX84); similar to trypsin inhibitor, putative [Arabidopsis thaliana] (TAIR:AT2G43535.1); similar to rapeseed glutamyl endopeptidase inhibitor [Brassica napus] (GB:CAJ44306.1); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) 0.130068978821898 1.22990324227700 0.244662311975065 1 0.103612396939159 1.99874367179593 0.130068978821898 0.112082968711091
AT1G76930_at 1.74426791983062 3.50452212862255 1.2324353392217 1.77284066109540 1.93223591026717 2.30639878643579 0.595086183934245 1.43012810937744 1.05815265939249 3.30629256724577 1.29606022346836 1.57787955226303 0.94922071316027 0.917695429562906 1.29399538868047 0.878450964126555 1.33307145049737 1.54503714783809 0.985217165325806 0.18180378847842 0.193653867286376 0.185631675314148 0.190466160554285 0.177697758314111 0.184679762609893 0.177881840114277 0.180902907007592 0.183855604143699 0.179593950637523 0.175714088795228 0.175714088795228 0.18608783639593 0.182311467706586 0.179458463367938 0.181534762960508 0.178834528163688 0.183964188006902 0.183713929397092 1 1 - 28900595 28900606 28900600.636 28900195 28901777 - gene protein_coding_gene FALSE TRUE AT1G76930.1|AT1G76930.2 ATEXT4 (EXTENSIN 4) Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness. Identical to Extensin-1 precursor (AtExt1) (AtExt4) (EXT1) [Arabidopsis Thaliana] (GB:Q38913;GB:Q9FS15;GB:Q9SAW2); similar to ATEXT3 (EXTENSIN 3), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G21310.1); similar to Extensin-3 precursor (AtExt3) (AtExt5) (GB:Q9FS16); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.283408924903959 -1.22976552730952 0.244711876489818 1 0.103463295289082 3.31831295785861 -0.283408924903959 0.355829412423176
AT1G10940_at 7.37058290067033 7.55792376756798 8.0115662084329 7.96900366674344 8.2594973319243 7.59881783086237 7.96855250155829 7.84003419001087 7.46708560136428 7.93282073649778 7.98035412147878 7.67387314813986 7.80449961424711 7.8740949444507 7.35453351231729 8.20622884517556 7.62525120565112 7.6496911732882 7.93281235011251 0.171528659521315 0.164064328790472 0.164962054958229 0.167118904492541 0.159274747561474 0.171238199274578 0.165940988869647 0.169105120342696 0.191203278264334 0.169197409391589 0.163641847871808 0.157880291223741 0.162453008015645 0.174361704394947 0.159208578707251 0.157880291223741 0.174654581888762 0.163199070313668 0.163756534168404 1 1|0 -|/ 3656209 3656932 3656421.889 3655777 3658578 - gene protein_coding_gene FALSE TRUE AT1G10940.1 ASK1 (ARABIDOPSIS SERINE/THREONINE KINASE 1); kinase Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. Identical to Serine/threonine-protein kinase ASK1 (EC 2.7.11.1) (ASK1) [Arabidopsis Thaliana] (GB:P43291); similar to SNRK2-10/SNRK2.10/SRK2B (SNF1-RELATED PROTEIN KINASE 2.10, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10), kinase [Arabidopsis thaliana] (TAIR:AT1G60940.2); similar to serine/threonine protein kinase (GB:AAA33003.1); similar to serine/threonine protein kinase (GB:AAA33004.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.134470422070469 1.22960720571793 0.24476886740715 1 0.103291898382675 15.5963166580139 0.134470422070469 0.121128688172175
AT3G62610_at 1.64631677587731 1.63373650932547 1.66944606045859 1.59950847308374 1.67759289319163 1.92371516575819 1.61148500829975 1.70259519855335 1.85525055930290 1.99698781652102 1.39579481753420 1.50687499243501 1.33893441520304 1.29596328878372 1.12152125143280 1.71607066535421 1.80988114740620 1.88236342965561 1.51380059939054 0.197269609734598 0.194334514106533 0.197969112825053 0.195864649794726 0.194502241179258 0.198369033324014 0.197331968306182 0.193014247474708 0.194177108492240 0.197799494996557 0.195897564609024 0.194241498319156 0.198174588711463 0.196174812997974 0.197916024470545 0.201134432954383 0.19539129372534 0.193014247474708 0.196252914864595 3 3 + 23166824 23167319 23167059.818 23165734 23167561 + gene protein_coding_gene FALSE TRUE AT3G62610.1 AtMYB11 (myb domain protein 11); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB12 (myb domain protein 12), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT2G47460.1); similar to Myb-like DNA-binding domain, putative [Medicago truncatula] (GB:ABE90996.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.105610941160075 -1.22936768501092 0.244855107735751 1 0.103032627241269 3.33160209025871 -0.105610941160075 0.0470526590015508
AT1G02320_at 1.15885462656872 1.21576070783115 1.21225602628361 1.40132532960215 1.35589881466390 1.51428950038272 1.18469871853805 1.50472574433864 1.47429242327903 1.34918098450564 1.18066615532594 1.34682769721898 1.44026196136534 1.78108490742734 1.45685636433985 1.35803009237935 1.59817833149217 1.49375993204375 1.18638368067540 0.174087042663559 0.174280852688084 0.179023258329966 0.177977347629236 0.180590829872304 0.17406062727112 0.179225414871567 0.176751409753310 0.176832524252445 0.176069543936464 0.180806619632572 0.177216532080360 0.181749737885557 0.173810953618835 0.182439336063464 0.181590126586785 0.188530296089562 0.180404116526193 0.178002654738490 1 1 + 461828 461950 461896.727 461828 461974 + gene protein_coding_gene FALSE TRUE AT1G02320.1 unknown protein 0.112635809563176 1.22902997743687 0.244976741983106 1 0.102667136100058 2.71526478836901 0.112635809563176 0.0706119035835395
AT3G24680_at 1.9695671762928 1.86137266924804 1.84494806093169 2.33271214772755 1.82630780539817 2.05975973714034 2.47899577852771 1.98524148988338 2.01622559535640 2.18541959668200 2.04703629243116 2.17731215572360 1.81051756787822 2.01282074903427 1.75934559349597 1.67371193893854 2.37156863502853 2.16213372728708 2.45751455132843 0.182390836799826 0.184329093061014 0.183790778345418 0.184775086230453 0.191739894930262 0.182126773333320 0.199164068575276 0.185113358987312 0.187764524733606 0.181184903658515 0.181921427254282 0.184047882996284 0.196214695923029 0.189482648555063 0.190597228525123 0.181499295883684 0.191039286509001 0.195499241954451 0.186326798043116 3 3 - 9015531 9015987 9015767.182 9015507 9016970 - gene protein_coding_gene FALSE TRUE AT3G24680.1 zinc finger protein, putative similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) -0.137888211333494 -1.22849668482088 0.245168919914001 1 0.102090119500094 4.1556259816101 -0.137888211333494 0.128097039771121
AT4G11140_at 0.701334364943015 0.465035475962117 1.08220471127737 0.56233577560549 0.540128474882099 0.564430907270944 0.84551215783377 0.610982234140466 0.516819560331908 0.173634195461913 0.804598580836791 0.76192803573519 0.397213890468466 0.900779766917262 0.810453683882361 0.252483586072674 0.948391806641209 0.614140498756326 0.698129769647793 0.196080291554927 0.190608242014561 0.193467302577311 0.190746356142403 0.186399407614941 0.189980598684237 0.194773101904255 0.188441588850720 0.188048106306556 0.194606349343744 0.191731589044032 0.192094606899835 0.190957636822124 0.196727349475676 0.190667852718414 0.189642041279912 0.193360505298476 0.186228821425912 0.188469186641219 4 4 - 6794926 6795408 6795188.455 6794772 6795789 - gene protein_coding_gene FALSE TRUE AT4G11140.1 CRF1 (CYTOKININ RESPONSE FACTOR 1); DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). similar to CRF2 (CYTOKININ RESPONSE FACTOR 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G23750.2); similar to TSI1 [Nicotiana tabacum] (GB:AAC14323.1); similar to Os01g0224100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042450.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.127473232527857 1.22841984369584 0.245196620422292 1 0.102006993470515 1.24605046589490 0.127473232527857 0.106915822347256
AT2G20080_at 1.58949708012807 1.48334274386425 1.71158764786781 1.6571042716016 1.36754630431323 1.23755472624277 1.11532163698475 1.86882997868501 1.88395927928038 1.35292057476762 1.46695938938719 1.34003291896016 1.69002317422920 1.02716627003217 1.75513093711435 1.29860104790062 1.53560797184573 1.31778966273122 1.83287843718131 0.261133989919834 0.269489813358535 0.268033015863447 0.271480536607550 0.261133989919834 0.273368405101419 0.275870372499702 0.273006970433913 0.261133989919834 0.269064008501107 0.2683442191818 0.261133989919834 0.263709386045519 0.272734335532378 0.261133989919834 0.276818201180753 0.268806051105585 0.270191744799567 0.273831065487424 2 2 - 8671597 8671722 8671657.333 8670011 8672107 - gene protein_coding_gene FALSE TRUE AT2G20080.1|AT2G20080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28840.1); similar to Os01g0676900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043850.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85100.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28840.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73533.1) -0.140902565646926 -1.22828204741118 0.245246300976635 1 0.101857936295798 3.06326472467836 -0.140902565646926 0.133925730029473
AT1G75600_at 1.04633850688069 0.883477494391807 1.14816497564726 1.32479674119558 1.43918635395725 1.23905496580868 1.19535518320671 0.962536988718225 1.41390361518879 1.50920516200234 1.26369722318067 1.18306560824135 1.58011164231984 1.50978132273646 1.34210849986796 1.43442341848842 1.71797456265394 1.76090113206981 1.62760351162984 0.158678135264344 0.169179968669298 0.159946417595889 0.164860485407543 0.160917721059228 0.162623609103082 0.159652537756442 0.160505015528462 0.178783248441436 0.167195080052429 0.158678135264344 0.165143793415947 0.160779182217455 0.158678135264344 0.159991448999446 0.161713132546267 0.159651073083016 0.162836313530143 0.168701635919455 1 1 + 28394425 28394995 28394627.455 28394326 28395154 + gene protein_coding_gene FALSE TRUE AT1G75600.1 histone H3.2, putative Identical to Histone H3-like 3 [Arabidopsis Thaliana] (GB:Q9LR02); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to Histone core [Medicago truncatula] (GB:ABE85856.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.111488772886992 1.22825112932945 0.245257449173217 1 0.101824493240325 2.65031991246001 0.111488772886992 0.0674645509397138
AT3G52260_at 4.23800237302607 4.03675979594225 3.67069794848802 3.55496814480339 4.582841917655 4.3429673605818 4.00452251284847 3.87063025442352 3.60596632615622 3.68901594730965 3.83671622786053 3.42928479131428 3.51738463734461 3.21760517504401 3.63122727065058 3.52281951072838 4.24767575668081 3.59742892375852 4.23979387039191 0.194688849058559 0.185282857213190 0.206209850053924 0.189553062971773 0.187826085926472 0.185282857213190 0.196502186571513 0.185934433411372 0.200359727235783 0.206369813367386 0.199064928514220 0.185977181097017 0.193959947329534 0.196762654971751 0.188955095575098 0.192861017875867 0.202617116101989 0.191997511979294 0.199785877469309 3 3|0 -|/ 19394907 19396475 19395526.625 19394244 19397471 - gene protein_coding_gene FALSE TRUE AT3G52260.1|AT3G52260.2 pseudouridine synthase family protein similar to pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G51140.1); similar to pseudouridine synthase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95377.1); contains InterPro domain Pseudouridine synthase, Rlu; (InterPro:IPR006224); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145)|similar to pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G51140.1); similar to Pseudouridine synthase, RluD [Crocosphaera watsonii WH 8501] (GB:ZP_00517595.1); contains InterPro domain Pseudouridine synthase, RluD; (InterPro:IPR006225); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) -0.109758742895619 -1.22789059025889 0.245387479462491 1 0.101434555959366 7.77264537245038 -0.109758742895619 0.062241703269231
AT3G18840_at 2.41028866884965 2.22366949084307 2.91791551182379 2.65126371205393 2.18325522645228 2.95623070219986 2.29354821702541 2.38852037544174 3.22927853636862 2.60485853543443 2.73128306382414 2.36584919260304 2.83550253805635 2.94300563617238 2.75653873342005 2.64865953738285 2.64637623884118 3.00689709297274 2.55130950528484 0.206477204756183 0.202420594184752 0.213701243514451 0.210325097781689 0.220469124437462 0.209421419130293 0.211049935725048 0.214145402473264 0.213035637937069 0.214179739244547 0.224548127359413 0.20718325703872 0.210655593399868 0.204815502949554 0.207005826974083 0.202420594184752 0.211050369346692 0.206789375010529 0.206271088233328 3 3|0 +|/ 6497766 6498752 6498324.889 6496204 6498946 + gene protein_coding_gene FALSE TRUE AT3G18840.2 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to Os03g0775400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051430.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE94373.1); similar to hypothetical protein MtrDRAFT_AC149805g18v1 [Medicago truncatula] (GB:ABE88407.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.14738737261115 1.22782561958019 0.245410917346804 1 0.101364296565994 5.27154291968041 0.14738737261115 0.146068869444372
AT3G11740_at 1.51592264471343 1.8514405582302 1.82820112242497 1.83576001469802 1.81469397834230 1.68228592276629 1.51904475675275 1.62321510319574 2.10722253597109 1.86256069155460 1.72073907149897 1.59211576237719 1.95736116317308 1.99175452087063 1.83218126935450 1.54476959345093 2.01191161860752 2.03013740050214 1.36030729478071 0.280687726643598 0.278977409796266 0.292318036281865 0.288856746786861 0.28114176607769 0.290772095431165 0.281396701332535 0.286923671756365 0.286382692907372 0.291818785997711 0.283209257822293 0.278977409796266 0.284876788626133 0.278977409796266 0.291277907337089 0.278977409796266 0.280720913023399 0.289045687014420 0.286093381386333 3 3|0 +|/ 3712441 3713341 3712767.8 3712385 3713452 + gene protein_coding_gene FALSE TRUE AT3G11740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01750.2); similar to Protein of unknown function DUF567 [Medicago truncatula] (GB:ABE88873.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.11062697652272 1.22778567077196 0.245425329592523 1 0.101321097222271 3.51472958301455 0.11062697652272 0.0649849092283666
AT4G29430_at 3.42415729813544 3.96550182455128 3.40569677761329 3.85085321061216 3.33177622075095 3.71689463140713 3.70612414407661 3.73409581906281 2.87749483510851 3.59611619224167 2.69391408328205 3.15710306052344 2.76545709799316 2.74361824128031 3.48986894633192 3.57333273250332 3.44491682003978 2.9907256773239 3.31457707014592 0.237027113809906 0.236214782859504 0.225000438946670 0.229707105193704 0.225000438946670 0.231801056364586 0.226591082721370 0.228982260032073 0.232645590866014 0.225184722654722 0.227201706403987 0.225110776119220 0.229858661665195 0.232948668292953 0.227754336993627 0.227298981407687 0.232626955017384 0.227631293297795 0.230259354845399 4 4|0 +|/ 14472450 14473301 14472887.7 14472406 14473627 + gene protein_coding_gene FALSE TRUE AT4G29430.1 RPS15AE (ribosomal protein S15A E); structural constituent of ribosome Identical to 40S ribosomal protein S15a-5 (RPS15AE) [Arabidopsis Thaliana] (GB:Q9M0E0); similar to RPS15AB (ribosomal protein S15A B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G19720.1); similar to 40S ribosomal protein S15a (GB:Q9AT34); similar to Os02g0255200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046462.1); similar to Os02g0478600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046846.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) -0.143263422391473 -1.22777782715223 0.245428159397987 1 0.101312615508266 6.82693571489709 -0.143263422391473 0.138477986328795
AT2G10020_at 5.17523026526449 5.26181618346602 5.45707159604557 5.40607183644017 5.07490425992509 5.05762431643384 5.0231128662636 5.30852235033005 5.82421473654408 5.45499954888527 5.72485719327602 5.44849183474359 5.71344491524671 5.65915492038158 5.73088072475324 5.56157989657898 5.73011303048743 5.71047260249897 5.2294835891185 0.152511936226690 0.157118967115948 0.156438668174268 0.149827713587693 0.151915342197949 0.144515964203165 0.144537671958535 0.158255986666958 0.151697477363684 0.157411455540967 0.144515964203165 0.14823006259814 0.155654218668136 0.14990060966565 0.147444235169271 0.147201119895760 0.162166541742305 0.149710362422331 0.147287083133826 2 2 + 3804319 3804486 3804403.091 3804313 3804513 + gene protein_coding_gene FALSE TRUE AT2G10020.1 unknown protein 0.106861342054996 1.22761506373302 0.245486886757743 1 0.101136619966783 10.8019310499020 0.106861342054996 0.052448773809363
AT1G03190_at 3.21065573886235 3.46255843991929 2.61447368746127 3.23337367258678 3.65841731363517 2.89198104176335 3.36065344166200 3.57201857482566 3.09047028837977 3.24674686828854 3.83521577871153 3.32366912865763 3.0023185139979 3.56771312945538 3.11573269919692 3.33240574225677 3.36342863426949 2.76529459161099 3.62170041593763 0.210738592795271 0.209938482965196 0.213100318176144 0.205986589101680 0.206639932757941 0.206355732890806 0.201815207724037 0.204254552653151 0.211856121053002 0.208241745025319 0.210057139759385 0.203021075440443 0.201220888654785 0.208505631740033 0.213929301694290 0.204790698294096 0.205656942751737 0.202967514269162 0.216053784985447 1 1|0 +|/ 778562 779827 779264.889 775527 780062 + gene protein_coding_gene FALSE TRUE AT1G03190.1|AT1G03190.2 UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding UV damage and heat induce a common stress response in plants that leads to tissue death and reduced chloroplast function. The UVH6 product is suggested to be a negative regulator of this response. Identical to DNA repair helicase UVH6 (EC 3.6.1.-) (UV hypersensitive protein 6) (XPD homolog) (ERCC2 homolog) (RAD3 homolog) (AtUVH6) (AtXPD) (UVH6) [Arabidopsis Thaliana] (GB:Q8W4M7;GB:Q9SE44;GB:Q9ZVS1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G79950.1); similar to PREDICTED: excision repair cross-complementing rodent repair deficiency, complementation group 2 protein isoform 5 [Pan troglodytes] (GB:XP_001164105.1); similar to PREDICTED: similar to Xeroderma pigmentosum D CG9433-PA, isoform A [Apis mellifera] (GB:XP_396155.3); similar to ERCC2/XPD gene product (GB:AAA85822.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain DEXDc2; (InterPro:IPR006554); contains InterPro domain Helicase c2; (InterPro:IPR006555); contains InterPro domain DEAD_2; (InterPro:IPR010614); contains InterPro domain Protein of unknown function DUF1227; (InterPro:IPR010643); contains InterPro domain Xeroderma pigmentosum group D protein; (InterPro:IPR001945); contains InterPro domain DNA repair helicase Rad3; (InterPro:IPR013020) -0.166663516777373 -1.22731156640603 0.245596422976773 1 0.100808495240616 6.5544472229086 -0.166663516777373 0.179726407516552
AT1G17560_at 1.39045046905461 1.54219298582880 1.249503923821 1.50070585476712 1.79118097280256 1.82821130551076 1.86427744398107 1.87905072135556 2.04751667005325 2.11673132685326 2.7580517964947 2.91897167157309 2.03257073568704 2.35791599265634 2.62178684946487 2.29745946148705 2.09272204558485 2.59095588217242 2.34356644329330 0.206226052690039 0.206638810696037 0.216168352232586 0.206060229524156 0.204562694284557 0.205120199036387 0.201175486913624 0.201965026070957 0.206989120958814 0.209973780919041 0.201223371993463 0.206258485869648 0.205448911642968 0.201175486913624 0.220408222707865 0.201175486913624 0.205411246805850 0.205710581284685 0.201188637301904 1 1|0 -|/ 6037632 6038543 6037999.444 6037457 6038685 - gene protein_coding_gene FALSE TRUE AT1G17560.1 HLL (HUELLENLOS); structural constituent of ribosome Mutant shows abnormal ovule development similar to ribosomal protein L14 family protein / huellenlos paralog (HLP) [Arabidopsis thaliana] (TAIR:AT5G46160.2); similar to Ribosomal protein L14b/L23e [Medicago truncatula] (GB:ABE94699.1); contains InterPro domain Ribosomal protein L14, bacterial and organelle form; (InterPro:IPR005745); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) 0.106470216746897 1.22681488933783 0.245775764773518 1 0.100271644129893 3.94473460186851 0.106470216746897 0.0512539000774232
AT1G14910_at 7.07294556391068 7.33684294305257 6.8799963557167 6.93955311098853 6.97836226771892 6.56583496259922 6.87041135361057 6.68787734334295 7.0796510206508 6.3684150031527 7.06896475135865 7.47759557953171 7.10724019250331 7.05469996608079 7.64485911142358 6.95643241243486 6.34962223288101 7.08029586392616 6.65448354345772 0.207643403761731 0.194614422524531 0.206522011083966 0.201748400590805 0.203632710374904 0.199196164209413 0.195297274910074 0.197378544897984 0.216652440227770 0.200310597671837 0.194043385129139 0.197692911346933 0.204646735352567 0.214486817058885 0.203906748494577 0.194043385129139 0.223711798697947 0.209836345160253 0.208469295038313 1 1 - 5139973 5140480 5140262.091 5139707 5143684 - gene protein_coding_gene FALSE TRUE AT1G14910.1 epsin N-terminal homology (ENTH) domain-containing protein Identical to Putative clathrin assembly protein At1g14910 [Arabidopsis Thaliana] (GB:P94017;GB:Q8L644;GB:Q9LQU0); similar to epsin N-terminal homology (ENTH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01600.1); similar to Os01g0694900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043956.1); similar to Carbamoyl-phosphate synthase L chain, ATP-binding; ANTH [Medicago truncatula] (GB:ABE84582.1); similar to Os05g0549000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056232.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.120265640645209 1.22667887520861 0.245824895491965 1 0.100124656348553 13.8131347973781 0.120265640645209 0.0910284435885495
AT4G07510_at 0.971918903673777 1.40418762533173 1.72943625888084 1.47105632243336 0.914129957915308 1.13650376201647 1.07665299317340 1.27600261668743 1.92734720968255 1.56148965424282 1.45851454237289 0.967953517342656 1.11139540013022 1.30154186824967 1.55063219755512 1.46534624961833 1.22552172406770 1.50373916557409 1.62052157265412 0.190346039918784 0.187217579353942 0.188153277459741 0.197514978602989 0.189040973831184 0.189749554701205 0.188837792319099 0.197807951925024 0.196182375900834 0.187835087216280 0.187217579353942 0.188862864327276 0.191559186121523 0.187217579353942 0.187217579353942 0.193641608085478 0.200149377537276 0.197005765341747 0.197509341775036 4 4|0 +|/ 4312780 4313567 4313297.25 4312209 4313619 + gene protein_coding_gene FALSE TRUE AT4G07510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42110.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.124723927575541 -1.22655622728159 0.245869204843461 1 0.099992123458995 2.76058608600087 -0.124723927575541 0.101322998825256
AT4G02140_at 0.960405777977555 0.493600394982759 0.56047317180666 0.621858509368984 0.632334085925047 0.7849337726722 0.302832820710543 0.406209211674091 1.19590869376331 0.8227105041045 0.97741977810776 0.867477736038649 0.936999562325565 1.03280906666076 0.742720960315332 1.18226936252663 1.003341117944 1.30976206491127 0.61588190606011 0.186705202189943 0.192543014440171 0.188193025822882 0.198996942925986 0.18781846892883 0.186542241563560 0.192077657980466 0.197842777989171 0.192666994185895 0.191809092751123 0.191241732478134 0.196986861455822 0.194289532401187 0.189537794646857 0.188185243496338 0.189322833804042 0.198637232196494 0.186337386271957 0.189204257626663 4 4|0 -|/ 949824 950207 950017.3 949617 950270 - gene protein_coding_gene FALSE TRUE AT4G02140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02700.1) 0.118785377534045 1.22644622925819 0.245908949569062 1 0.0998732683180684 1.53771446351292 0.118785377534045 0.0874994171177337
AT3G18295_at 3.18861288645023 4.14671382877394 3.86949928971173 3.7961896475532 4.21469860966751 3.81949246809920 4.04442142424813 3.98562110036597 3.68523086190796 3.66224014522038 4.23368178535864 3.95883338171226 4.02533731890738 3.75309177624354 3.85762458502698 4.16790128315263 3.7046351913083 3.29017148685478 3.5250428576495 0.201214172279168 0.215804194617414 0.204024480746271 0.205778512254063 0.205827850970478 0.199635983260791 0.201940403558886 0.204941655395747 0.210094567463036 0.204101271539688 0.199400553537158 0.210533232514218 0.201586313438694 0.205491987710682 0.209307433961430 0.208012221389578 0.210613513000283 0.215116305339339 0.201324127984673 3 3 + 6281325 6281971 6281578 6281210 6282087 + gene protein_coding_gene FALSE TRUE AT3G18295.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48770.1); similar to Os01g0688600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043919.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79894.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) 0.166683003304812 1.22585148863646 0.246123931648966 1 0.0992307749043708 7.63219660152366 0.166683003304812 0.180091387065700
AT1G58030_at 9.63909528531223 9.83631048837506 10.0951617314735 10.1121325005216 10.4585155613671 10.4098859670017 9.47713796462358 9.65339902158926 9.79102584448244 9.55810791857137 9.06824766850142 8.93793471446715 9.78317796047997 9.4192830917149 8.8102306611202 9.28351096479554 9.64386635481254 9.43187389063073 9.76401756360909 0.101386906811305 0.0961737212946847 0.0980385374079392 0.103373609296971 0.0989552198349106 0.0968015730162455 0.0993048523348393 0.0961737212946847 0.100599946234190 0.0995545483448705 0.103740204147562 0.105466798833543 0.100158853110191 0.104976419901311 0.097258645477628 0.0961737212946847 0.112116915863063 0.103997286822441 0.0972231914282081 1 1|0 -|/ 21467911 21468964 21468545.111 21467671 21472085 - gene protein_coding_gene FALSE TRUE AT1G58030.1 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g58030) similar to CAT4 (CATIONIC AMINO ACID TRANSPORTER 4), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT3G03720.1); similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABD28534.1); similar to Amino acid permease-associated re (GB:ABE92408.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99422.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.105160068938471 1.22531908561127 0.246316508033635 1 0.0986558192568353 19.4610295344678 0.105160068938471 0.0466332200969368
AT1G22620_at 8.16944381334577 7.78217692878105 7.56492987534566 7.50293759906155 8.01519810379502 7.72228458642733 7.11614295449851 6.87414206425578 6.76058170554242 7.05772755280364 6.78501317161905 6.55151676182087 6.61744991264252 7.06497266643129 6.55334381748531 6.81065885669637 7.17655135264483 6.72860090807105 6.45788698454091 0.195006609749333 0.19601592352265 0.202586598124351 0.193131972607960 0.190735220098566 0.205965136924231 0.183440708714739 0.186810726679118 0.192647045629810 0.191703556431203 0.187042843445932 0.191371629876200 0.191119864091058 0.183440708714739 0.193764384678836 0.187693774856858 0.185849539109111 0.188436533742757 0.189702190060946 1 1|0 -|/ 7997899 7998682 7998339 7997665 8002933 - gene protein_coding_gene FALSE TRUE AT1G22620.1 ATSAC1 (SUPPRESSOR OF ACTIN 1); phosphoinositide 5-phosphatase SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization. similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G20840.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G43220.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G14205.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); similar to Os08g0109100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060808.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.121571225450598 1.22500789666189 0.246429124541371 1 0.0983198436711802 14.3657797466332 0.121571225450598 0.094498216748288
AT2G42980_at 1.00454859435396 1.56414982995272 1.73431425178886 1.40713589885865 1.13408862831181 1.23350835256819 1.02047534668119 0.95467360990777 1.16757193696045 1.66417686116806 1.49321276696813 1.31646977927771 1.53731512881436 1.25982195557909 2.07996343239693 1.56821218112157 1.53224271799689 1.15102136466470 1.58609293005188 0.200497449681219 0.200680833871534 0.204520443847415 0.201467458443487 0.206600638377484 0.200009454039100 0.202746000950954 0.198709460493748 0.204052215912916 0.208702099163263 0.201482820998473 0.211412311161336 0.199368684736555 0.200531098974713 0.204222094108012 0.200064315801614 0.200584532391503 0.201216176053858 0.198709460493748 2 2 - 17882100 17882527 17882300.273 17882082 17883665 - gene protein_coding_gene FALSE TRUE AT2G42980.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G59080.1); similar to Os02g0314600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046662.1); similar to Avr9/Cf-9 rapidly elicited protein 36 [Nicotiana tabacum] (GB:AAV92892.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.130484222058463 1.22486085725366 0.246482351126134 1 0.0981611142719259 2.73905997667583 0.130484222058463 0.114060402125672
AT3G55590_at 1.74719178002022 1.83382012275003 1.83169194515248 1.73059296881989 1.53446708244811 1.64613693070229 1.56034582907028 1.82246397562426 1.51024416519464 1.99065126343951 1.82617255295120 1.62681571209657 2.26252615317624 1.23598544622280 1.84778444116879 1.86420519444532 1.68435044991915 1.98223004378191 2.34998688599579 0.217957816003607 0.216587990362111 0.216912485406629 0.212032601846527 0.223592107673466 0.217979565085631 0.214530193167101 0.212032601846527 0.218502488781203 0.214931307523694 0.212871458766737 0.21864680384802 0.215562063846351 0.239404787954501 0.212290310214379 0.219708990330263 0.214682073916109 0.219459483052620 0.212032601846527 3 3 + 20629304 20629730 20629535.818 20628458 20629860 + gene protein_coding_gene FALSE TRUE AT3G55590.1 GDP-mannose pyrophosphorylase, putative similar to CYT1 (CYTOKINESIS DEFECTIVE 1), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39770.1); similar to GMPase [Medicago sativa] (GB:AAT58365.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.107134275370954 -1.22449852934884 0.246613548952320 1 0.0977700404269821 3.58411525637189 -0.107134275370954 0.0544232982630093
AT1G78300_at 8.67716941431015 8.85498855555365 8.38285930601887 8.53550884422831 8.26406516408069 8.43368254030438 8.86065869098458 9.20080064226411 9.08457862095918 8.68624703487987 9.57819737119626 9.27852307410724 9.2099179853948 8.91847890996087 9.45445359816721 8.80303286711818 8.5982436168477 9.10898923091501 8.78973992973482 0.112916457832687 0.110859672511695 0.110706340474478 0.113124760581711 0.117658712723677 0.113902818280546 0.115568197658224 0.115058174689385 0.119199423432528 0.118613332000424 0.109930424766953 0.113404158633065 0.116424673535071 0.122412378096091 0.115117345180470 0.109590413270475 0.122795477682968 0.115676732849330 0.117909010666163 1 1 + 29466956 29467916 29467255.636 29466564 29468278 + gene protein_coding_gene FALSE TRUE AT1G78300.1 GRF2 (GENERAL REGULATORY FACTOR 2); protein phosphorylated amino acid binding G-box binding factor GF14 omega encoding a 14-3-3 protein Identical to 14-3-3-like protein GF14 omega (General regulatory factor 2) (GRF2) [Arabidopsis Thaliana] (GB:Q01525); similar to GRF4 (GENERAL REGULATORY FACTOR 4), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G35160.1); similar to GF14omega isoform (GB:AAA96253.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.114583821132304 -1.22417050951276 0.246732372118693 1 0.0974160701899854 17.6373423665038 -0.114583821132304 0.0772739224896229
AT1G16360_at 1.66913277625329 1.35642872423815 1.76262264232512 1.98530882339275 1.56464191429275 1.44357169525936 1.97758050732007 1.21237848380422 1.73505826809208 1.71411518560915 1.67557049726276 1.66428864648432 2.08538905069512 2.01081087317002 1.19435989441077 1.38874488439048 1.77677314301665 1.86835283746830 1.18714942561765 0.217210969750684 0.221730105461779 0.220857966241261 0.220847769290838 0.217210969750684 0.224654025848937 0.218691243604782 0.227077167853706 0.221007850291489 0.23658250355805 0.223173316842279 0.220141220630564 0.231244201933023 0.217210969750684 0.218950204955363 0.219336141619767 0.217597798783919 0.227055918163794 0.228600371674797 1 1 - 5593516 5594315 5593909.364 5593295 5595173 - gene protein_coding_gene FALSE TRUE AT1G16360.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G79450.1); similar to Os06g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058302.1); similar to Os02g0173800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046043.1); similar to hypothetical protein [Lotus japonicus] (GB:BAD32828.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) 0.14887570725145 1.22391075852927 0.246826497807468 1 0.097135819375821 3.24819678992835 0.14887570725145 0.149626258195066
AT1G04820_at 7.30142253278591 7.00816798760926 6.40087923374238 6.32422012191868 6.33990828794334 6.11852759157575 7.19676948652667 6.99130563621257 6.91459807306944 6.66490429585355 8.25043210301366 8.94226861536326 7.01269884586586 7.74658262632843 9.07040163099062 7.5775320168961 6.48947746408847 8.11947389202047 6.9579933476171 0.185913073343081 0.186517581155963 0.183083127254369 0.183313489656304 0.181601040217284 0.184133667731927 0.184943462014968 0.180242927063445 0.184851339345102 0.177519686167452 0.185975376360935 0.191444262722182 0.177519686167452 0.185159040758210 0.186464449599450 0.18306950512539 0.202646742233564 0.178934740423332 0.178676846738154 1 1 - 1356623 1356862 1356797.818 1356190 1358385 - gene protein_coding_gene FALSE TRUE AT1G04820.1 TUA4 (tubulin alpha-4 chain) Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA6 (tubulin alpha-6 chiain) [Arabidopsis thaliana] (TAIR:AT4G14960.2); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to Tubulin alpha chain (GB:P33629); similar to alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] (GB:AAV92352.1); similar to putative tubulin alpha-2/alpha-4 chain [Brassica napus] (GB:AAQ81585.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.113371945909469 1.22381239181009 0.246862150349685 1 0.097029700909184 14.0836202622064 0.113371945909469 0.0740503422392544
AT4G35980_at 5.69604740093527 6.43857179688086 5.84634489030537 6.21267336588796 6.16383565744711 6.28940372371568 6.0450547843249 6.50858591272394 5.53478098263523 5.44585691862666 6.01614840573649 6.06736444738979 5.98938771596268 6.29112253055469 5.67407458245386 6.33181519288952 5.57114531189827 5.37458629969623 5.68359515324299 0.221669096769322 0.222219389429023 0.226139360147648 0.220071261757969 0.217093740466925 0.241500129279844 0.217093740466925 0.221128772075813 0.227599539606756 0.222070480327353 0.217093740466925 0.221424541874324 0.223722136139210 0.221446447635226 0.219198282909269 0.221573482597008 0.236326485838756 0.226416025505826 0.219495973519379 4 4 - 17030819 17031101 17030948.273 17030575 17031699 - gene protein_coding_gene FALSE TRUE AT4G35980.1 similar to hypothetical protein MtrDRAFT_AC148217g8v1 [Medicago truncatula] (GB:ABE88169.1); contains domain gb def: Hypothetical protein (PTHR21068:SF3); contains domain FAMILY NOT NAMED (PTHR21068) 0.157855322471927 1.22326957958106 0.247058964116050 1 0.0964442258543038 11.8846646476898 0.157855322471927 0.165642105908081
AT3G50780_at 4.91346511419643 5.22638616364838 4.30739477397474 4.33708814390962 5.85549370729029 5.53777993654552 5.6352934952023 5.56039401401291 4.40584847232106 4.41864330530648 4.90745207039879 5.58091547085837 4.91539222519791 5.04349015126768 5.45913933065955 5.20893375011678 5.36562537165016 4.27776013246373 4.7971389918323 0.208988665207069 0.210395137200048 0.219939998900043 0.207296767282819 0.205555536267113 0.221481551691456 0.210606902260982 0.207579240999874 0.217872736328446 0.213756258569615 0.205902012541273 0.206809575306425 0.214800791386050 0.206861948600321 0.214190125388375 0.205555536267113 0.220725400314505 0.229316933836174 0.210257268947231 3 3 - 18886672 18887131 18886894.2 18886380 18888505 - gene protein_coding_gene FALSE TRUE AT3G50780.1 similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT1G63850.1); similar to PRLI-interacting factor G-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83795.1); similar to Os03g0769400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051395.1); similar to Os07g0123500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058798.1); contains domain POZ domain (SSF54695) 0.114924708335855 1.22323650313596 0.247070961084673 1 0.0964085559354355 9.9893529949208 0.114924708335855 0.0784213113412406
AT4G24760_at 4.10126187646257 4.91236150275951 4.62221060737545 4.66523785074563 5.25352432771564 5.35098357443109 4.84732156872247 5.06304112869816 5.70036377805853 5.12409277439574 4.88941664243276 4.42690932600157 4.81311646219589 5.04320592993337 4.58612977387211 4.89448172278483 4.45484579413924 5.10102240356258 5.11178528694877 0.200733510757007 0.195413239784607 0.193500231890327 0.191269090879230 0.197252026219463 0.195799795512687 0.190669188105927 0.207702278269371 0.206920350703489 0.202216227605734 0.193001842034917 0.196463739105754 0.197583982031682 0.19864302818541 0.202601402558489 0.198997738837436 0.199482659352304 0.200044229103770 0.192285873935556 4 4|0 -|/ 12761723 12762296 12761944.9 12761293 12763791 - gene protein_coding_gene FALSE TRUE AT4G24760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14390.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.146973517681387 -1.22282503672668 0.247220240671104 1 0.0959648866197076 9.89610361461364 -0.146973517681387 0.146409480166619
AT1G13310_at 1.86529780571815 1.70551505310332 2.53909310352003 2.29625701851605 1.55304213973067 2.0666225234224 1.38644357209224 1.63393009785581 2.49361022562832 2.03437036607188 2.05950713721807 1.41094132698414 1.75792330413757 2.04615859731301 1.90457671260934 1.57346794690290 2.33604768188562 1.53866936965801 1.58302290534237 0.219038045151011 0.217323952874800 0.218897975896716 0.225309640207119 0.224062209497218 0.214844294816025 0.213586721155305 0.214666894075724 0.216332102711940 0.218438467726722 0.209420035272528 0.212708812465002 0.216562608333972 0.209394901509571 0.207008931962003 0.210737782080305 0.224708345646283 0.21512306421023 0.21887258901417 1 1 - 4561221 4561503 4561366 4561065 4562295 - gene protein_coding_gene FALSE TRUE AT1G13310.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56082.1); contains domain PCD6 INTERACTING PROTEIN-RELATED (PTHR23030) 0.128683704006316 1.22281771498879 0.247222897643063 1 0.0959569928534537 3.81348150187955 0.128683704006316 0.110743395405353
AT3G06120_at 1.18989084927726 1.19530635986735 1.43896861236898 1.05051403016430 1.10203742876228 1.31368855016655 0.77082193265081 0.67540900028363 1.54750170321816 1.67514618384103 1.32145898851640 0.875395401743553 1.27480973975103 1.10303238002878 1.14558158792978 1.08497207490862 1.30993268429544 1.44980052751019 1.85860682221026 0.213444319965632 0.221087409739498 0.215163401791593 0.218168464103709 0.219218536594389 0.220042605880427 0.221310153853631 0.225415260118510 0.225353983364087 0.222582624205720 0.226595315292251 0.224258596615783 0.218160656459697 0.213444319965632 0.214859170003111 0.213444319965632 0.218618649963377 0.217755934346773 0.228220618492569 3 3 + 1846581 1847996 1847297.909 1846537 1848236 + gene protein_coding_gene FALSE TRUE AT3G06120.1 basic helix-loop-helix (bHLH) family protein similar to FMA (FAMA), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G24140.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAW57801.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.114841763412622 -1.22275567656595 0.247245411568414 1 0.0958901089310394 2.53676684186362 -0.114841763412622 0.0783205938724643
AT2G30695_at 5.59964421287615 5.44193867175087 4.96276645029823 4.7760353817197 5.85608887758558 5.23588306543333 5.89078138273095 5.26824364002158 3.66925006493314 4.63071090525054 4.89827944194058 5.20489320740218 4.66420826962765 5.25491200042328 5.53859679134227 5.43157387592598 4.21567376353319 4.95840792547827 4.81533366736723 0.255461160393281 0.251653185466633 0.238923094881005 0.244032381128916 0.247888380688342 0.256186034414868 0.244971696158385 0.244167012326474 0.261550909150702 0.252014111037388 0.246398894369228 0.242728418204427 0.248247909212755 0.2433888332455 0.246844147891541 0.238923094881005 0.265523040476403 0.247698006740483 0.240542416071002 2 2|0 -|/ 13086367 13088145 13087389.333 13086167 13088476 - gene protein_coding_gene FALSE TRUE AT2G30695.1|AT2G30695.2 similar to Os01g0894700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045071.1); similar to P0696G06.13 [Oryza sativa (japonica cultivar-group)] (GB:BAC06256.1); similar to Os09g0515400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063667.1) 0.15329737359493 1.22246891681995 0.247349498825761 1 0.0955809844407156 10.0752142296235 0.15329737359493 0.157845208922932
AT1G61840_at 1.65400777579034 2.01194195808799 1.95800066637169 2.27204238168660 1.67786966528179 1.96225791790337 2.09062883893088 1.79427585704831 2.48067183232177 2.0848000249836 1.55859147955885 2.07732799220947 2.24714419549674 1.72333421617291 1.63296939681256 1.80135107675893 1.81153247524195 2.59128844961579 2.23170281122761 0.220434637245240 0.231923361415582 0.226472091502433 0.230480009693019 0.219416782947962 0.220830687681582 0.222266892298818 0.224514590966206 0.230208346048759 0.219416782947962 0.230533822010256 0.225078973829345 0.223593697541741 0.232615043812567 0.225129951508187 0.219416782947962 0.233104432300983 0.222522802872766 0.219416782947962 1 1 + 22852900 22853465 22853116.091 22851054 22853498 + gene protein_coding_gene FALSE TRUE AT1G61840.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02640.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40050.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02610.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.127726714465553 -1.22230427746504 0.247409274994289 1 0.0954035288658793 4.02571178250982 -0.127726714465553 0.108823846192159
AT1G53325_at 0.335513376844648 0.411924276133034 0.69674902907274 -0.0648362916332918 0.362796081140711 0.601977498132339 0.299167575777207 0.438516582180905 0.759158787617448 1.01408132065315 0.609515516974227 0.294881167842100 0.332814601201267 0.201784085697472 0.364405682377005 0.35557645529188 0.305213900788146 0.250380579678737 0.191603504774317 0.195780274272927 0.192242838944498 0.190749927009267 0.198095049164138 0.189348391351509 0.189348391351509 0.19517255603227 0.191546148214611 0.195617072568268 0.192203156374219 0.206937672312863 0.192099612147125 0.201146895307454 0.191839248335117 0.189348391351509 0.189348391351509 0.197484286551353 0.208108334149876 0.192486521365605 1 1 - 19898926 19899339 19899142.182 19898895 19899401 - gene protein_coding_gene FALSE TRUE AT1G53325.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G58090.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.143867622919720 -1.22205604512268 0.247499423388053 1 0.0951360064597225 0.882360700829199 -0.143867622919720 0.140853816654015
AT1G19290_at 2.46896399357318 1.9180785198392 2.91787382351741 2.34680782465019 2.10293010721797 2.29790835260971 2.50050735565912 2.46385248976682 2.11562649562868 2.54522460888782 2.01611760375279 1.96034721028936 1.77344456544719 2.16349967310361 1.77724474119101 2.16867008389875 2.28723735542718 2.15522799751757 2.55315748658257 0.215204859192790 0.209717197022122 0.221198066032877 0.206862451140010 0.204006069782464 0.207817074131345 0.210961956554025 0.207597907883858 0.211377060972018 0.212700203502319 0.210029295702249 0.205839089827902 0.210572337698441 0.208500767014397 0.213139037810262 0.207385674985335 0.207805286058665 0.209733824943821 0.211138234614693 1 1 + 6668360 6668798 6668537.727 6666717 6668954 + gene protein_coding_gene FALSE TRUE AT1G19290.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G59900.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85126.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.144208219624343 -1.22181130491869 0.247588329280809 1 0.0948722868735623 4.59831190045159 -0.144208219624343 0.1415404431808
AT2G23560_at 1.80498262488606 1.82674234141375 1.82744271289324 1.73992294184133 1.17702717392531 1.83749101697416 1.39557835877395 1.11504761405431 1.89110006393223 1.82907404978085 1.81491088395436 2.04810978172650 1.89095046694532 1.63289522094730 2.19527108527191 2.08072720661316 2.12929888839251 1.84088713430283 1.65810851993010 0.211573552072058 0.215064240441307 0.222493909325535 0.216634761492833 0.211262415723470 0.213735199369161 0.214902595723071 0.214115902153117 0.234806274108879 0.211665889737768 0.213016751977253 0.213508130172338 0.214627441729167 0.219779794745032 0.213872753782189 0.211485172985256 0.213320171180773 0.214531807102832 0.224400056917865 2 2 - 10036448 10037154 10036749.455 10036355 10037462 - gene protein_coding_gene FALSE TRUE AT2G23560.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.135626841132333 1.22169776760681 0.247629582240115 1 0.0947499581005505 3.46397545379541 0.135626841132333 0.125156117055754
AT2G25540_at 0.785270538050358 1.03465530329851 0.889806346638398 1.10382282194591 0.867959416539383 1.15496434184084 1.27164068703817 0.960692032079165 0.873362384777355 1.14904275744817 1.00947732589040 1.39554706670669 1.05608033471304 1.05706036910549 1.42404603933210 0.967457904674034 1.37802688205513 1.07037156133948 0.737285780654827 0.224497001565670 0.223267009127715 0.223727195510578 0.234526449019086 0.219724289541010 0.227681660430654 0.227297303000741 0.228305381494780 0.228530246197894 0.224078147771380 0.224459727027403 0.220554780515011 0.222528548133582 0.226637663822815 0.219724289541010 0.222152215644977 0.227829467699732 0.219724289541010 0.219724289541010 2 2 - 10874172 10874690 10874406.273 10873900 10879155 - gene protein_coding_gene FALSE TRUE AT2G25540.1 CESA10 (CELLULASE SYNTHASE 10); transferase, transferring glycosyl groups cellulose synthase Identical to Probable cellulose synthase A catalytic subunit 10 [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) (CESA10) [Arabidopsis Thaliana] (GB:Q9SKJ5); similar to CESA3 (CELLULASE SYNTHASE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G05170.1); similar to CESA6 (CELLULASE SYNTHASE 6), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G64740.1); similar to CESA1 (CELLULASE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G32410.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25536.1); similar to cellulose synthase 5 [Eucalyptus grandis] (GB:AAY60847.1); similar to CesA1 [Acacia man (GB:AAT66940.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.120467526404087 1.22150520687364 0.247699560349161 1 0.094542506146034 2.05342914081409 0.120467526404087 0.0927186621461215
AT1G51910_at 2.26109195299211 2.52378955758734 2.72371576439055 2.84048661692554 2.30496292183321 2.33268902655015 2.97512731208646 2.56222173438774 3.11751584773595 2.57875922897351 2.60249569110328 2.45296496548072 2.62332741319256 2.54020164389004 2.91787310398146 2.61445494491445 2.95996768785219 2.84177779514268 3.00465348655862 0.189420932574956 0.183009853393594 0.201411584408293 0.199846198425625 0.189365951113490 0.196437244620405 0.186660726082047 0.183993754414918 0.205289545611162 0.197206112665967 0.191867231593606 0.205599625577106 0.203950228972607 0.189515734974664 0.196561489193669 0.188406421549699 0.184893756759128 0.202271299604104 0.190776022578627 1 1 - 19287947 19288567 19288195.818 19287946 19292054 - gene protein_coding_gene FALSE TRUE AT1G51910.1 protein kinase family protein similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51890.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51880.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51860.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.118135336116619 -1.22098448066418 0.247888875588732 1 0.0939816318984584 5.36273182423616 -0.118135336116619 0.0872005290302559
AT3G26200_at 2.8698290718375 2.67823823974149 2.55227134511125 2.94686069014718 1.83918408408026 2.70481076271531 2.29115028968936 2.47809969120301 2.88714980836283 3.63938600004940 3.03341756563433 3.42923785211598 2.47481173700986 3.21496689663666 3.14163508286582 4.13174395109146 2.23973937233416 2.74249096734492 3.38460615523732 0.219091687338125 0.237930736448041 0.226781471167266 0.227447630742253 0.223277709733400 0.218311055940975 0.219296627721312 0.233535413718370 0.229558340701027 0.215555479045402 0.222668023079784 0.227851790280023 0.215555479045402 0.239778510877414 0.218478525697886 0.234955513993258 0.23843684492493 0.225662817716601 0.225383209306337 3 3 + 9591646 9592181 9591964.545 9590519 9592416 + gene protein_coding_gene FALSE TRUE AT3G26200.1 CYP71B22 (cytochrome P450, family 71, subfamily B, polypeptide 22); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B22 (EC 1.14.-.-) (CYP71B22) [Arabidopsis Thaliana] (GB:Q9LTM1); similar to CYP71B5 (CYTOCHROME P450 71B5), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G53280.1); similar to CYP71B38 (cytochrome P450, family 71, subfamily B, polypeptide 38), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G44250.1); similar to CYP71B21 (cytochrome P450, family 71, subfamily B, polypeptide 21), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26190.1); similar to Cytochrome P450 71B8 (GB:P58048); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.160628081179186 -1.22058563695008 0.248033957420294 1 0.0935521568814617 5.72241522982183 -0.160628081179186 0.171023842239976
AT3G13682_at 2.46287863819564 2.31486686915775 2.56018911768658 2.15630592812614 2.20009893031074 2.48016956806209 1.97684637793399 2.18819838648787 2.32575149835176 2.21990616343021 2.07924987267499 2.45830375504918 2.71117767370149 2.41325702457954 2.52074614893263 2.84484019357793 2.55723524926768 2.77441234208300 2.69893152377545 0.196436882030744 0.194001982978011 0.198680477573732 0.188384460292476 0.189455176298598 0.187386783720847 0.190059225240868 0.184368460970549 0.190046008629168 0.191263695589228 0.190380918503087 0.184450341119665 0.186740355876664 0.186624870392863 0.193361995180305 0.18883477181656 0.186140639135198 0.189179142498671 0.188173373746849 3 3 - 4479221 4479739 4479457 4479200 4481516 - gene protein_coding_gene FALSE TRUE AT3G13682.1 amine oxidase family protein / SWIRM domain-containing protein similar to amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62830.1); similar to FLD (FLOWERING LOCUS D), amine oxidase [Arabidopsis thaliana] (TAIR:AT3G10390.1); similar to putative polyamine oxidase isoform-2 [Oryza sativa (japonica cultivar-group)] (GB:BAD13198.1); similar to B0103C08-B0602B01.13 [Oryza sativa (indica cultivar-group)] (GB:CAH68056.1); similar to Os08g0143400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060976.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Amine oxidase; (InterPro:IPR002937); contains InterPro domain SWIRM; (InterPro:IPR007526) 0.121766519366702 1.22020415073231 0.248172788840183 1 0.0931414695120234 4.77232714916299 0.121766519366702 0.0960630083575336
AT4G31900_at 1.51630339677891 1.02789844427569 1.40977153111482 1.36576724596168 1.32690142930921 1.43041510993977 1.24521037085540 1.44496157699938 1.47984021536639 1.9172834188039 1.39654901438092 0.9371020213956 1.30141562747723 1.23777161628359 1.86027101352026 1.45138308394033 1.63127040489731 1.36905842797408 1.74471891093681 0.205859939550682 0.202456145496395 0.197724643772481 0.204111199592573 0.198671016021983 0.199252303180114 0.196637986163127 0.203427678009254 0.215478678651746 0.201497495948329 0.200313256895241 0.198498825786309 0.208745854514144 0.200870267986262 0.198618478269826 0.196352295752787 0.196434885830405 0.205799771970108 0.195978308645732 4 0|4 /|+ 15437693 15438378 15438098.444 15431534 15438449 + gene protein_coding_gene FALSE TRUE AT4G31900.1 chromatin remodeling factor, putative similar to PKL/SSL2 (PICKLE, SUPPRESSOR OF SLR2) [Arabidopsis thaliana] (TAIR:AT2G25170.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (japonica cultivar-group)] (GB:BAD72546.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa] (GB:AAL47211.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (indica cultivar-group)] (GB:AAL47203.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Protein of unknown function DUF1086; (InterPro:IPR009462); contains InterPro domain Protein of unknown function DUF1087; (InterPro:IPR009463); contains InterPro domain Chromo; (InterPro:IPR000953) -0.120612240974004 -1.22018954932178 0.248178103855611 1 0.0931257523121138 2.90192872128904 -0.120612240974004 0.0933679871517925
AT2G16960_at 1.12764766920540 1.45390888531265 1.66094055983053 1.5814987360614 0.950542704543518 1.51524202319394 1.58636725998250 1.53937058757906 1.54619146057448 1.89722888997291 1.34649103840463 1.30776803780773 1.20130411181974 1.14819289455652 1.04615486124029 1.69004279654219 1.99191784246848 1.77473573855027 1.65178924040859 0.192700900065456 0.188351785605256 0.188351785605256 0.202019194447827 0.192094408365325 0.191955509548544 0.192719349653879 0.193531490016638 0.193282421903765 0.198340704340216 0.191750738078867 0.188504955655348 0.189303393299734 0.196675288461576 0.190437841534377 0.188351785605256 0.196941446930638 0.191109614217527 0.203077030685271 2 2 + 7375076 7376015 7375539.091 7371765 7376045 + gene protein_coding_gene FALSE TRUE AT2G16960.1|AT2G16960.2 importin beta-2 subunit family protein similar to protein transporter [Arabidopsis thaliana] (TAIR:AT2G16950.2); similar to transportin-like protein [Cicer arietinum] (GB:CAD56216.1); similar to OSJNBb0020J19.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE05776.2); similar to Os04g0691500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054359.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357)|similar to protein transporter [Arabidopsis thaliana] (TAIR:AT2G16950.2); similar to PREDICTED: similar to transportin 1 [Danio rerio] (GB:XP_691079.1); similar to OSJNBb0020J19.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE05776.2); similar to Os04g0691500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054359.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.129922438212078 -1.21991994261870 0.248276258923919 1 0.092835568195607 2.99530435929315 -0.129922438212078 0.113986601578197
AT3G04450_at 3.09054340984127 3.11502525985094 3.38017747047345 3.11311912250548 2.91856213279580 3.27749411608558 3.02410841089811 2.81352579438387 3.16160678955805 3.44303854998571 3.07236585656578 2.93501574126113 2.97698631555325 2.60369791806786 2.49358513705709 3.23096744035199 3.12682741656982 2.92977235717807 3.34783554969249 0.195632152530078 0.198676886486254 0.190608833197244 0.189679019129848 0.197762153968491 0.198355208642835 0.203348688519620 0.191092362784531 0.19673207251235 0.204632638007681 0.192632086579272 0.191709580736834 0.194814229705589 0.194392523279092 0.193097303143639 0.195685448998509 0.205060360634772 0.198491815152857 0.192327019865257 3 3 + 1185143 1186219 1185715.273 1184305 1186346 + gene protein_coding_gene FALSE TRUE AT3G04450.1 transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G29000.2); similar to CDPK substrate protein 1; CSP1 [Mesembryanthemum crystallinum] (GB:AAF32350.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.11740193259913 -1.21973844482034 0.248342353860232 1 0.09264024450805 6.21089241588983 -0.11740193259913 0.0856745961269827
AT2G17060_at 0.929027585189496 1.19501827995335 0.820021325362826 0.684337125725414 0.56097190525415 0.856543740980721 1.05142317111475 0.606187587802445 0.969389657412256 0.837913292969508 0.592582422402436 0.711627443426842 1.08279655141672 1.06231738799318 0.989135369111771 0.713169646298398 0.845285111681555 0.880768141752333 0.88372519819867 0.216411259428672 0.226915800571367 0.222517927803851 0.219511565114508 0.219797409545121 0.217014477530268 0.219523223627919 0.216411259428672 0.219546001575302 0.222643844368464 0.220127236069161 0.220405833043573 0.218761000824991 0.222291209829298 0.217627248904963 0.218703323896404 0.226643166834081 0.219329062013111 0.218931117772333 2 2 + 7433343 7433924 7433586.3 7429493 7433959 + gene protein_coding_gene FALSE TRUE AT2G17060.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45230.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.126122377641986 -1.21973511712762 0.248343565816829 1 0.092636663523658 1.71630116123317 -0.126122377641986 0.105939803247159
AT4G39440_at 1.35373179399944 1.65976257688436 1.38160022966085 1.40672184136051 1.30694010233993 1.56800335810152 1.49264612388884 1.24173426031289 0.99312882022658 1.03619952703250 1.57388016376984 1.18443241485658 1.02749491140026 0.837834394497256 1.31988182813686 1.09138957155429 1.62569597300087 1.54095555869282 1.03687349719314 0.201347487942733 0.209498282644071 0.199691750022556 0.201629209207507 0.203551372704135 0.202923081080169 0.200871204420888 0.204751352854813 0.201664693358312 0.200841606802243 0.206498361320015 0.203087132190710 0.206139539005648 0.203324681219859 0.212879613151323 0.202976348787607 0.210407712993263 0.201109130154859 0.215140568395222 4 4 + 18346539 18347122 18346857.818 18345679 18347221 + gene protein_coding_gene FALSE TRUE AT4G39440.1 contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.115988007299425 1.21940627253292 0.248463355403437 1 0.0922828241448092 2.57502397755488 0.115988007299425 0.0821593710697072
AT1G37020_at 1.03059153680900 1.15123515120929 1.20551709154087 0.983210672055496 0.839472840980822 1.10013466693150 1.11777466454342 1.32989694156004 1.57645169624002 1.2447812007554 1.16872185801095 1.20382185449439 1.04464235124869 0.705593037528787 1.12568054593171 1.05331293416033 1.66900408259901 1.43163565946870 1.00377430928861 0.175481470109351 0.178350661070126 0.177337903727365 0.1801353821086 0.181904072483414 0.175481470109351 0.18091502579678 0.178515658183596 0.189240194926784 0.176964524855729 0.175540581682030 0.175959929810038 0.175580121014637 0.181813505714379 0.193245427005204 0.181308653772797 0.185103340995435 0.179308203940890 0.187099852762655 1 1 + 14051597 14052151 14051796.818 14049176 14052183 + gene protein_coding_gene FALSE TRUE AT1G37020.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G45570.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65085.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.112495808658811 -1.21920054805620 0.248538318980645 1 0.0920614988825853 2.31988116696630 -0.112495808658811 0.0727890779241471
AT3G06210_at 4.37876769837065 4.07892700398053 4.36172533972314 3.75297826242628 5.22750742066176 4.56822205309703 4.21049637576693 4.19801916921820 4.70913871515039 4.45206751363437 4.32893092080102 3.82568572407474 4.20792164397442 4.21744400290965 3.84688971395029 4.17910484652317 3.96658309901584 4.49942451591172 4.96128591559397 0.197618102781212 0.199753715705881 0.197219595186365 0.198065892259991 0.193895340463964 0.204984038533749 0.194235669335169 0.202924027486485 0.200895260350332 0.196879580763569 0.194756050722073 0.198634618067425 0.198413626631675 0.196929197610764 0.199238122672758 0.198778027665174 0.200177578816832 0.195089734821104 0.198098420846497 3 3|0 +|/ 1882652 1883262 1882975.8 1880753 1883497 + gene protein_coding_gene FALSE TRUE AT3G06210.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G18980.1); similar to Os03g0362200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050159.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17354.1); similar to Os12g0528100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066912.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.156221807960746 -1.21905304080006 0.248592080008062 1 0.0919028226612912 8.7678281353329 -0.156221807960746 0.16374394638164
AT1G71950_at 9.10947833202676 9.12895552057777 8.86859111152038 9.0144570636791 9.35093518840628 8.98607353043274 8.76385266520305 8.91922069324896 8.76486734461329 8.55585000355305 8.79638680278903 8.78446766016107 8.89022529527785 8.97843775702277 8.5204350766433 8.88963953066133 8.5238021286096 8.65468599998793 8.49199593374416 0.0970213904823896 0.0978137150656983 0.0987859593519458 0.101342757181730 0.098490091000728 0.0957325313670785 0.0961590043866198 0.0976013659313634 0.0999707601068014 0.094547130445534 0.0978495485971226 0.0985346676383578 0.100013286326215 0.104863665180692 0.0969766110447561 0.095698493693188 0.103948890621486 0.0971790449338567 0.0989742882487883 1 1|0 -|/ 27084136 27085194 27084776 27083846 27085275 - gene protein_coding_gene FALSE TRUE AT1G71950.1 identical protein binding / subtilase similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G11940.1); similar to putative Pi starvation-induced protein [Cicer arietinum] (GB:CAA07232.1); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.112579845751383 1.21853349814873 0.248781508373494 1 0.0913440544099765 17.6971944091523 0.112579845751383 0.0732001775316901
AT3G42860_at 2.34944431721324 2.27978646139949 2.5672614843866 2.12929194472468 2.39723374107717 2.5723573326001 2.25615446806603 2.09883649176312 2.28545632193297 2.53186364474673 2.48188833820922 2.29538749223301 2.42376839261337 2.66459402353480 2.50324982434934 2.36318811697381 2.74334737295679 2.41732621831129 2.44741053242531 0.199804552011972 0.193025953402754 0.189698181999799 0.190530356315921 0.194540262440965 0.194362136715301 0.196081985117894 0.188664696507498 0.196633436747705 0.202923415853866 0.188664696507498 0.19875202420022 0.190836997389757 0.191217258121546 0.193589105770274 0.193476339651598 0.191771678929481 0.199215171882253 0.198468792998557 3 3|0 -|/ 14957466 14958427 14957777.4 14957176 14959155 - gene protein_coding_gene FALSE TRUE AT3G42860.1 zinc knuckle (CCHC-type) family protein similar to CSDP1 (COLD SHOCK DOMAIN PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G36020.1); similar to GRF zinc finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99235.1); similar to Os03g0786500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051489.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Zinc finger, GRF-type; (InterPro:IPR010666) 0.117748790224684 1.21829272945728 0.248869333162599 1 0.0910851674126251 4.78538105787016 0.117748790224684 0.0868877037178716
AT3G54310_at 1.36680698887816 1.70074499538081 1.79614879177811 2.32101909578845 0.881205027135002 1.47768586903730 1.23847760888765 1.88025381043798 1.74635402557914 2.05679094442112 1.76218900499142 1.65625089648782 1.38390755009351 1.25511064076818 1.48208094616919 1.73556179582601 1.74346466340191 1.81915844965542 2.24317775768383 0.204079609322685 0.203641282761947 0.205858945668539 0.206977345313881 0.206093341086422 0.205766973153793 0.206027043893775 0.208256292736473 0.211751463396369 0.206396883003688 0.203206889959293 0.204980002276841 0.218006096760901 0.210224757644251 0.208582308702292 0.206643390838529 0.212253342766802 0.214430203026541 0.203206889959293 3 0|3 /|- 20122380 20122909 20122579.9 20122131 20123922 - gene protein_coding_gene FALSE TRUE AT3G54310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38430.1); similar to Os02g0504100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046910.1) -0.169140785382641 -1.21819671884816 0.248904361694448 1 0.0909819423841736 3.39287097474154 -0.169140785382641 0.185956840256732
ATCG00510_at 10.4820881843615 11.4258859848738 10.8194174629131 10.9257694330315 10.6540207607379 10.4419286696185 10.7421917791204 11.2471412838923 12.3972020486408 12.1863593390211 13.1887092516269 13.3076231913153 12.8072565670886 12.8977967947950 13.0170099048533 12.9868456683703 12.3089034835123 12.2384608958586 12.1280812218039 0.08910634986126 0.0843402788705152 0.0946073842323685 0.0895303947712602 0.0850944663101254 0.0915758881225118 0.0875185070250424 0.0846890740084001 0.0905467359042378 0.0871781960488103 0.0856282680026338 0.0859936410233234 0.0922371303319589 0.0890340470805544 0.0897919112580705 0.0863186954677927 0.0892300957309212 0.0850525885410133 0.0858177051392977 C C + 59248 59314 59283.727 59247 59360 + gene protein_coding_gene FALSE TRUE ATCG00510.1 Encodes subunit I of photosystem I. Identical to Photosystem I reaction center subunit VIII (PSI-I) (psaI) [Arabidopsis Thaliana] (GB:P56768); similar to photosystem I subunit VIII [Cucumis sativus] (GB:YP_247609.1); contains InterPro domain Photosystem I reaction centre, subunit VIII; (InterPro:IPR001302) 0.171409395017779 1.2181749368504 0.248912309191203 1 0.0909585244840416 23.382950406235 0.171409395017779 0.189731540080961
AT1G36640_at 1.43869600869094 1.84886785631696 1.80249648732651 2.19529462005604 1.51609196836641 1.53774602739727 0.86864516272786 1.39397117518912 1.22119893057721 1.82621544599338 1.59014178119274 1.4093831528205 1.34089160292182 1.39246119111436 1.32352331044522 1.24537526633199 1.21852081991252 1.28031359136388 1.29053067637866 0.211141770451944 0.21968934220168 0.20388048259386 0.208262873767105 0.211271969245149 0.20437890995641 0.203069782385037 0.20825239154586 0.203069782385037 0.203069782385037 0.207928273205417 0.207319965051494 0.212897960087643 0.205825697751822 0.203648059720225 0.207346006536371 0.207177680861612 0.217418375148746 0.205415648815525 1 1|0 -|/ 13854411 13854764 13854583 13854388 13854899 - gene protein_coding_gene FALSE TRUE AT1G36640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36622.1) 0.1397284401259 1.21801744916539 0.248969777023223 1 0.0907892181610587 2.97325517517353 0.1397284401259 0.133932194889974
AT2G04880_at 8.62744165211535 8.89881456912557 8.93519080968564 9.01158190569224 8.91061748314033 8.81883881342041 8.88550575063686 8.99739440463123 8.62291934581883 8.95978871829838 8.46688122099658 8.42267913946209 8.56205458928813 8.50695046437455 8.13399830213587 8.7594843436992 8.48310957384782 8.43171650503896 8.66990210592623 0.120741020792163 0.122840012561733 0.124180391030452 0.122378657840532 0.121763764261403 0.130972646295051 0.128975549194553 0.127531638955719 0.132424743062116 0.122656364076454 0.123841666481725 0.121466807391899 0.125437946985446 0.124567968737025 0.122946929846601 0.123307722766649 0.136517750296801 0.140631540300951 0.121748821111611 2 2|0 +|/ 1719530 1720184 1719864.4 1717885 1720523 + gene protein_coding_gene FALSE TRUE AT2G04880.1|AT2G04880.2 ZAP1 (WRKY FAMILY TRANSCRIPTION FACTOR 1); transcription factor/ transcriptional activator Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic scid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. Identical to WRKY transcription factor 1 (WRKY DNA-binding protein 1) (Zinc- dependent activator protein 1) (Transcription factor ZAP1) (WRKY1) [Arabidopsis Thaliana] (GB:Q9SI37;GB:Q43388); similar to WRKY20 (WRKY DNA-binding protein 20), transcription factor [Arabidopsis thaliana] (TAIR:AT4G26640.2); similar to putative WRKY-type DNA binding protein [Glycine max] (GB:AAP85545.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.106621315234170 -1.21730606802054 0.249229494616619 1 0.0900246535305257 17.4965378355742 -0.106621315234170 0.0548398337765
AT3G06000_at 1.57601355108238 1.62565169562222 1.63534125782539 1.19970387533133 1.23268525841968 1.76605937426464 1.16132366851357 1.67507380568391 1.36627801570502 1.08340267398069 1.6570875060269 1.43814724450909 1.57780835926803 1.60883489083987 1.58967338126613 1.35750714451115 1.64195880257709 1.84778603523439 1.28058619317465 0.215843945682554 0.214242778343387 0.217428646212985 0.225562321173437 0.209134669553020 0.211863447078843 0.207070641322105 0.211950629161904 0.20979642424545 0.212726976932637 0.214874261132451 0.207070641322105 0.213491345812184 0.209740896265868 0.212179447741758 0.216902016852063 0.212641100283929 0.215124218977176 0.223177541314954 3 3 + 1801490 1801923 1801679.636 1801452 1802087 + gene protein_coding_gene FALSE TRUE AT3G06000.1 leucine-rich repeat family protein similar to RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2), RAN GTPase activator [Arabidopsis thaliana] (TAIR:AT5G19320.1); similar to Ran GTPase activating protein [Medicago sativa subsp. x varia] (GB:AAF19528.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor type; (InterPro:IPR007091); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.147679943738517 1.21720623835879 0.249265958650163 1 0.0899173869865623 2.90061791825082 0.147679943738517 0.148934731152828
AT3G09280_at 2.58078698057927 2.51023032766164 2.40281739580689 2.67189769131809 2.18821582284858 2.21373686903252 1.69176309940877 2.45633454624519 2.51213840191362 1.9693729588867 2.48551478694076 2.2415649609389 2.54097816300675 2.18466050306146 2.35744788659287 1.96127920158025 2.56406994066466 2.58787275402705 1.93311279469725 0.208599688839920 0.214036475284030 0.214193284101852 0.217690974577678 0.211662578360424 0.215929688719443 0.212113793756957 0.210052006458781 0.213627147788544 0.219271680797581 0.222003206293489 0.207447962008006 0.217316555993607 0.219781855027798 0.212157940149299 0.207447962008006 0.215169303556489 0.209185845868936 0.210606840158515 3 3 - 2850933 2851222 2851092.273 2850926 2851264 - gene protein_coding_gene FALSE TRUE AT3G09280.1 unknown protein 0.143301839523434 1.21718893119134 0.249272280742845 1 0.0898987911720879 4.59128862982968 0.143301839523434 0.140867268901296
AT3G61580_at 10.8986749133875 11.1636497957018 10.3864819378158 10.4433378742404 11.5740880057453 11.0584911938463 11.2408736149997 11.047857964399 11.1670794345453 10.8533060880784 11.3681327041962 11.1819805844094 10.9545885068204 10.9526580124620 10.8914024238711 10.4558319650783 10.6199051459985 11.1037551474591 10.8919223690734 0.102156201062823 0.102156201062823 0.106886902790589 0.102156201062823 0.10480560235501 0.102375135839329 0.105384023420412 0.105744330147191 0.109078222994802 0.102688221660654 0.102156201062823 0.102226481603584 0.106528801187975 0.107074680440968 0.103967066396938 0.106018474311179 0.118051716191352 0.109080024433983 0.102601819763922 3 3 + 22798020 22798518 22798163.909 22797022 22798947 + gene protein_coding_gene FALSE TRUE AT3G61580.1 delta-8 sphingolipid desaturase (SLD1) similar to delta-8 sphingolipid desaturase, putative [Arabidopsis thaliana] (TAIR:AT2G46210.1); similar to Fatty acid desaturase, putative [Medicago truncatula] (GB:ABE90798.1); similar to delta 8-sphingolipid desaturase [Borago officinalis] (GB:AAG43277.1); similar to delta-8 sphingolipid desaturase [Brassica napus] (GB:CAA11857.1); contains InterPro domain Fatty acid desaturase/sphingolipid desaturase; (InterPro:IPR012171); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Cytochrome b5; (InterPro:IPR001199); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257) -0.125950902577777 -1.21696160338459 0.249355332641219 1 0.089654555307366 21.9325824667766 -0.125950902577777 0.106191198130438
AT2G41300_at 2.30180255704406 2.24610848664725 2.01279125177355 2.04730883630114 2.24299937973596 2.25014605224906 2.24407090474736 2.33221403054142 2.68271870266545 2.48449466473312 2.63251016183203 2.90525378986598 2.14156674030406 2.60577474392103 2.68627343662366 2.46021423409431 2.43216140419882 2.44090698777952 2.61630286157594 0.203405814924291 0.199267568355511 0.198720499556327 0.203176316412606 0.204760624053922 0.211733151478682 0.212641630076004 0.209152453605571 0.213996562590223 0.208203777316624 0.201765382891584 0.202997805166675 0.202912219881136 0.20366541730233 0.208946353694459 0.2018666200774 0.204766482718930 0.20581746401153 0.200606476874190 2 2 - 17221533 17221935 17221746.7 17221315 17223370 - gene protein_coding_gene FALSE TRUE AT2G41300.1 strictosidine synthase similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57010.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.0995801685304182 -1.21661487570972 0.249482048597277 1 0.0892821040099258 4.77597423587277 -0.0995801685304182 0.0190466911718647
AT1G34170_at 1.47673030124609 1.75649233216692 1.85910106621472 1.66553418449677 1.37936804860749 1.79853082832824 1.74318339882747 1.68652468357539 1.63244714886252 2.20811401528777 1.36105781333015 1.70637634916463 1.67486367423895 1.90916541653385 1.72680937480811 1.94893479456779 1.93359925245851 1.7000752528277 2.14723147616954 0.193019976138563 0.192105154057992 0.194814980561636 0.188251675475105 0.195043430534636 0.191404405605389 0.193692989544712 0.194044518563737 0.193940366297333 0.196722243937153 0.200753606367966 0.191615312212899 0.192372695146222 0.201128863522182 0.200614140697592 0.195301937767379 0.193104138338758 0.189229321507356 0.187637895095473 1 1|0 -|/ 12443558 12444597 12444343.1 12443525 12446742 - gene protein_coding_gene FALSE TRUE AT1G34170.1|AT1G34170.2 ARF13 (AUXIN RESPONSE FACTOR 13); transcription factor|ARF13 (AUXIN RESPONSE FACTOR 13) Identical to Putative auxin response factor 13 (ARF13) [Arabidopsis Thaliana] (GB:Q9FX25;GB:Q9XIC3); similar to ARF22 (AUXIN RESPONSE FACTOR 22), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34390.1); similar to ARF14 (AUXIN RESPONSE FACTOR 14), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35540.1); similar to ARF15 (AUXIN RESPONSE FACTOR 15), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35520.1); similar to Putative auxin response factor 13 (GB:Q9FX25); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Auxin response factor; (InterPro:IPR010525)|Identical to Putative auxin response factor 13 (ARF13) [Arabidopsis Thaliana] (GB:Q9FX25;GB:Q9XIC3); similar to ARF22 (AUXIN RESPONSE FACTOR 22), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34390.1); similar to ARF14 (AUXIN RESPONSE FACTOR 14), transcription factor [Arabidopsis thaliana] (TAIR:AT1G35540.1); similar to Putative auxin response factor 13 (GB:Q9FX25); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Auxin response factor; (InterPro:IPR010525) -0.120459893078784 -1.21621752957125 0.249627326890974 1 0.088855375588375 3.5412036659818 -0.120459893078784 0.0939357831671435
AT1G76190_at 3.02140301351883 3.01176462725646 2.17683970390589 2.34328109934439 3.02895216375038 3.02859135994222 2.33672463724680 2.65850656857731 2.67474028585974 2.65398728778218 2.47327659216310 2.79427807327228 1.99771078305744 2.50711601315536 2.30637739376832 3.04071148274140 2.58035254159575 3.0061086813862 2.75110082609529 0.206700237140652 0.196072089626790 0.200449357751991 0.199782765847663 0.199788365256554 0.206652455210130 0.199889928960367 0.198221756998429 0.202944630638822 0.203798772450272 0.199547339006885 0.198375990469651 0.200099725556166 0.202450556635158 0.199785810381026 0.197930960081084 0.202732351205051 0.19683708697764 0.200523884723857 1 1 + 28597138 28597456 28597314.182 28597119 28597490 + gene protein_coding_gene FALSE TRUE AT1G76190.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G20470.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.108859159008691 -1.21616860706817 0.249645218677051 1 0.0888028425891899 5.34151668588689 -0.108859159008691 0.0627163515429035
AT1G47655_at 2.95895962839805 2.61995156080134 2.4670306019542 2.85692627300714 2.15606731889052 2.68957976552189 2.25356977659543 2.74274700293262 2.98464819836646 3.06813650877441 2.96593947450333 2.95348540442518 2.87498536317235 2.54763402814332 2.90964729017496 2.63934326824611 3.04579266838088 3.00439107254669 3.14766152032375 0.189120929296614 0.192692502367931 0.195972195310735 0.193153770558810 0.190628678874817 0.195074004226456 0.188087502506693 0.189967573516776 0.193556979995882 0.199523897827291 0.196426070263851 0.191805156710773 0.192938773132601 0.190169834016767 0.198221561703251 0.192185709107228 0.201632746298049 0.189529449448708 0.195819459596018 1 1 + 17527934 17528458 17528228.909 17527805 17528746 + gene protein_coding_gene FALSE TRUE AT1G47655.1 Dof-type zinc finger domain-containing protein Identical to Hypothetical Dof zinc finger protein DOF1.6 (AtDOF1.6) (DOF1.6) [Arabidopsis Thaliana] (GB:Q9SX97); similar to OBP1 (OBF BINDING PROTEIN 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G50410.1); similar to DNA binding with one finger 5 protein [Pisum sativum] (GB:BAC81662.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.150284545147096 -1.21605458066696 0.249686924030868 1 0.0886804070833566 5.56033785618964 -0.150284545147096 0.153899507486053
AT1G75810_at 4.77984909081698 5.25349593807132 5.04758391804238 5.25962429241286 5.40110377506691 5.17364304315195 4.42469215731401 5.33538273751492 3.78874265116902 4.01435344345299 4.02545113121647 3.49409908910896 4.60805014980873 4.68671799249932 3.82751898301605 4.65590760515055 4.41635506777768 3.20220489835628 4.34515690039592 0.260570270995843 0.263984257781469 0.255916672838394 0.256372886363596 0.256779379273673 0.253115235321492 0.260517238645128 0.265309977579569 0.273371808233358 0.262067491410502 0.260665954116904 0.262130422409279 0.253330758027547 0.264190043133152 0.253115235321492 0.253365236085718 0.257104908957056 0.26022148917143 0.257465105671535 1 1 + 28465413 28465752 28465573.545 28465325 28466027 + gene protein_coding_gene FALSE TRUE AT1G75810.1 unknown protein 0.168627112924997 1.21598105654293 0.249713818554615 1 0.088601465288248 9.16639975886028 0.168627112924997 0.185612576728158
AT3G47250_at 10.6828436649064 10.8786135141580 10.8279402494723 10.8525503029622 11.1928720970984 10.7578305249061 10.6393388071409 10.5861169460267 10.9995576165560 10.6610752836047 10.5307213301270 10.1962457374285 10.3584630203381 10.4928942094025 10.0658064407159 10.5803773622047 10.2270624093831 10.4944025659796 10.7736237111223 0.0879198236852686 0.0873354363285024 0.0916374457568114 0.0881317843990705 0.0884252514088639 0.0955679955310744 0.0873354363285024 0.089112097900525 0.093881576521397 0.0892880774717302 0.088674709914039 0.0873354363285024 0.0887780067907244 0.0890722921870808 0.0885270258889922 0.0873354363285024 0.0948215380956117 0.0936126797708804 0.0886131840104012 3 3 - 17411115 17411665 17411340.636 17410862 17412716 - gene protein_coding_gene FALSE TRUE AT3G47250.1|AT3G47250.2|AT3G47250.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47200.2); similar to hypothetical protein LOC_Os12g29620 [Oryza sativa (japonica cultivar-group)] (GB:ABA98257.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.116051087714239 -1.21591276649105 0.249738800568037 1 0.0885281464103627 21.3920960157714 -0.116051087714239 0.0831788685638216
AT2G05830_at 8.32916850058313 8.33501206218735 8.45256043915843 8.348889846249 8.99244138069096 8.56439312570996 8.58329040286366 8.4137344583617 8.05999532722209 8.44081068357893 8.05780254866458 8.20326342876785 8.50966114520728 8.24482491323017 8.20804876872584 8.48641128981194 8.4153375968295 8.44400984921474 8.29278443549339 0.142056508176119 0.141546481124719 0.145353180034528 0.144743939966340 0.136658915600716 0.158759264667461 0.139049203006085 0.140464836260128 0.144363159632906 0.144043969937502 0.140249803795931 0.135434034032636 0.141090612186522 0.139731400020232 0.144572380171565 0.141460776158174 0.152780615620622 0.140642677904848 0.137921733113335 2 2 + 2230801 2231618 2231323.182 2229599 2232103 + gene protein_coding_gene FALSE TRUE AT2G05830.1|AT2G05830.2|AT2G05830.3|AT2G05830.4 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein|GTP binding / translation initiation factor similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT3G07300.2); similar to CIG2 [Nicotiana tabacum] (GB:BAB63262.1); contains InterPro domain Initiation factor 2B alpha/beta/delta; (InterPro:IPR011559); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) 0.115454817872408 1.21575538493702 0.249796381819759 1 0.0883591870252006 16.7952863226362 0.115454817872408 0.0816767169381063
AT4G27550_at 1.74165999624823 2.03903986394058 2.03357030119083 1.99204739316625 1.30245133504299 1.8844388370155 1.71695680120622 2.10147865534632 2.45922710775430 1.75181801191446 1.13193625817377 1.85224247496852 2.04322050021136 1.77788923860625 2.06298187680210 1.46146990637883 1.60925714557559 2.23510643697846 1.64296488735161 0.20931168809276 0.210535614163538 0.208534393279020 0.199646737169071 0.198831193586988 0.203074082394318 0.198831193586988 0.200611202032760 0.205300557902204 0.209299800639132 0.204342331584596 0.203224390901375 0.202998683393638 0.198831193586988 0.202122791979042 0.201638323447484 0.208255171426431 0.198884443890752 0.203281782445124 4 4 + 13758944 13759676 13759431.7 13755695 13759746 + gene protein_coding_gene FALSE TRUE AT4G27550.1 ATTPS4 (Arabidopsis thaliana trehalose phosphatase/synthase 4); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain. similar to ATTPS2 (Arabidopsis thaliana trehalose-phosphatase/synthase 2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G16980.1); similar to ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G78580.1); similar to ATTPS3 (Arabidopsis thaliana trehalose-phosphatase/synthase 3), alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Arabidopsis thaliana] (TAIR:AT1G17000.1); similar to trehalose-6-phosphate synthase, putative [Musa balbisiana] (GB:ABF70084.1); similar to SL-TPS/P [Sela (GB:AAD00829.1); similar to Trehalose-6-phosphate synthase component TPS1 and related subunits (ISS) [Ostreococcus tauri] (GB:CAL50152.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) -0.138115275938183 -1.21531498844242 0.249957566153626 1 0.0878864787727085 3.71300522225394 -0.138115275938183 0.131421937313478
AT2G26620_at 0.812667584858195 0.848327464918249 0.839073757472777 1.11385041324947 0.802530128491598 0.925213025484957 1.08700365526824 0.86075092311698 1.12708929955219 1.31000611913381 1.12516502411840 1.09946577961248 0.778616245103702 0.971214988945867 1.00414235422811 1.06815831999282 0.774614917824815 1.45311906742826 1.37755279992623 0.17462098478916 0.172023834320720 0.175896692125541 0.177297803528071 0.170998928399321 0.170998928399321 0.175956108322912 0.173844274966689 0.182943994906113 0.172244390305212 0.178741801516544 0.176741711323155 0.174100287470956 0.179733116652223 0.178584072717620 0.170998928399321 0.177051336160794 0.173493481779904 0.177190745904361 2 2 - 11332291 11332825 11332529.545 11332241 11333913 - gene protein_coding_gene FALSE TRUE AT2G26620.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G15450.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G15460.1); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G15470.1); similar to Zea m 13 allergen [Zea mays] (GB:ABD79096.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.109628947456494 -1.21506051776676 0.250050739784763 1 0.0876133955500575 2.064107865788 -0.109628947456494 0.0654446955750655
AT1G70710_at 2.91119984624254 3.05163415796756 1.91225452325308 1.39334520826794 1.55324759254000 1.97990113510872 1.52109564384237 1.84914541522922 2.57930108242403 2.42922943535609 2.94795178474635 3.71072047746717 2.46499877304192 3.24985105636292 3.26518955415849 2.75073724984549 2.56273272274021 2.79866475077959 2.85648346867031 0.255269602421820 0.249606063627154 0.262154868694373 0.255054167078510 0.255457047259717 0.253491483647508 0.250358438300439 0.267665951496831 0.254426674326126 0.249756644893247 0.249606063627154 0.249606063627154 0.249828526135331 0.257679951810517 0.253388005791956 0.255716975532418 0.254930698534538 0.251279286530487 0.249606063627154 1 0|1 /|- 26663018 26663568 26663235.8 26662794 26666672 - gene protein_coding_gene FALSE TRUE AT1G70710.1 CEL1 (cellulase 1); hydrolase, hydrolyzing O-glycosyl compounds endo-1,4-beta-glucanase. Involved in cell elongation. Identical to Endoglucanase 8 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 8) (Cellulase 1) (AtCEL1) (CEL1) [Arabidopsis Thaliana] (GB:Q9CAC1;GB:O23696;GB:O23697); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G23210.1); similar to endo-1,4-beta-glucanase precursor [Fragaria x ananassa] (GB:AAC95009.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAB43937.1); similar to endo-1,4-beta-glucanase isoform 02 [Fragaria x ananassa] (GB:AAQ15175.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -0.138198591851018 -1.21505777778323 0.250051743171787 1 0.0876104553888502 4.81674150278622 -0.138198591851018 0.131639734517627
AT3G04770_at 4.02735687567868 3.96624803151091 4.19341889069407 3.84535711614952 3.87399350841549 3.79380686772075 4.2794255224061 3.83096351255239 4.03192687385946 4.08099040673089 3.54900425739436 4.09524587185316 3.85916678558861 3.88746412545175 3.93725412597758 3.85449547132897 3.81794285521063 3.6684469044394 3.8269588361864 0.243184374018302 0.245828841025279 0.248270122708453 0.245819879778476 0.237235025558928 0.262064217485778 0.23906438359725 0.247766706382838 0.237235025558928 0.242385849158116 0.240233785660709 0.238187069658936 0.237235025558928 0.24208518467737 0.241217191097895 0.24023748012259 0.251257672878977 0.241276768370405 0.246016129610620 3 3|0 -|/ 1309568 1310263 1309932.1 1309300 1310893 - gene protein_coding_gene FALSE TRUE AT3G04770.1|AT3G04770.2 RPSAB (40S ribosomal protein SA B); structural constituent of ribosome Identical to 40S ribosomal protein Sa-2 (p40 protein homolog) (RPSaB) [Arabidopsis Thaliana] (GB:Q8H173;GB:Q8LB49;GB:Q8S9I1;GB:Q96317); similar to P40 (40S ribosomal protein SA), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G72370.2); similar to 40S ribosomal protein SA (p40) (Laminin receptor-like protein) (GB:Q9ZSR8); contains InterPro domain Ribosomal protein S2, eukaryotic and archaeal form; (InterPro:IPR005707); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) -0.122842772864378 -1.21478630109743 0.250151174359406 1 0.0873191695421597 7.88311441826489 -0.122842772864378 0.0997775867198597
AT1G52060_at 2.55255797356864 2.22093553748512 2.39431214814787 2.14841465318971 2.07210553933512 2.76878232292946 2.62875585155154 2.33742026456497 2.83114810944491 2.14242819466247 2.09645855453620 1.87950047859531 2.21989328294161 2.13891033027972 2.51417911689407 2.28024656134432 2.16007590582694 2.41646895025128 2.28309902639415 0.215106619172804 0.213984451355979 0.214550666122245 0.215089548616050 0.213984451355979 0.213984451355979 0.227827414195632 0.213984451355979 0.219239173252019 0.219921484696900 0.215127732808461 0.214212795276810 0.217840001061053 0.215302039939314 0.214083968182689 0.216357113008182 0.221018804987873 0.221378901370586 0.213984451355979 1 1 - 19362711 19363492 19363060.545 19362708 19364344 - gene protein_coding_gene FALSE TRUE AT1G52060.1 similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G52070.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.147344435071095 -1.21443956871895 0.250278214592894 1 0.0869472069392142 4.70646474855532 -0.147344435071095 0.148935028537908
AT1G68830_at 10.5196183138744 10.5688470165156 10.7203042775750 10.6415321489957 10.7462129599925 10.5358794085008 11.1167859597048 11.0661596793591 10.8635253234203 10.8192017053265 10.8761185895027 10.6897306160351 10.8931171882596 10.7651713783910 10.5286889892799 10.9129712174250 10.6877757576549 10.7520188498092 10.7535022073495 0.0833671527489114 0.0824464325942974 0.0861519188170128 0.0851220015078112 0.0832257696800244 0.0843340069545151 0.0850387693226486 0.0845889617213645 0.0926359590908341 0.0851160394368379 0.086051586211489 0.0832329250391143 0.0837827137097917 0.0857354981685096 0.0838673698784751 0.0826459775083914 0.0893096511479844 0.0863050911191437 0.0834773996799896 1 0|1 /|- 25876343 25876933 25876707.556 25876108 25879200 - gene protein_coding_gene FALSE TRUE AT1G68830.1 STN7 (STT7 HOMOLOG STN7); kinase/ protein kinase STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation Identical to Serine/threonine-protein kinase SNT7, chloroplast precursor (EC 2.7.11.1) (Stt7 homolog) (SNT7) [Arabidopsis Thaliana] (GB:Q9S713); similar to STN8 (state transition 8), kinase [Arabidopsis thaliana] (TAIR:AT5G01920.1); similar to Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily (ISS) [Ostreococcus tauri] (GB:CAL56118.1); similar to Os05g0549100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056233.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.102873941167436 -1.21437712251823 0.250301099895898 1 0.0868802251673133 21.5270552132281 -0.102873941167436 0.0407438955779894
AT3G16710_at 1.87430701097260 1.94828253100957 1.80430112192777 1.98734034101618 1.98967604277101 2.61591532262917 2.11380450898042 2.55377922044266 2.65694227166594 2.45513913597349 2.14220929897601 2.32979635766652 2.55880701735592 2.20971235497000 2.09993209699275 2.30754290105306 2.02903882326799 2.17061945031456 2.35559127558628 0.205143285814551 0.210746998871628 0.214904510153313 0.213874034924546 0.209492481167359 0.210726659005444 0.214654946901618 0.208640554460599 0.210103832843400 0.206100816088578 0.205704379941744 0.203014481245621 0.203769466756292 0.203213205599871 0.216292590457274 0.203014481245621 0.204555874323035 0.213724377669002 0.211987838534851 3 3 + 5690990 5691474 5691257.182 5690245 5691549 + gene protein_coding_gene FALSE TRUE AT3G16710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G41170.1); similar to fertility restorer homologue C [Raphanus sativus] (GB:CAD80164.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.140751025466290 -1.21392067634975 0.250468429113523 1 0.0863907041600841 4.47101652012693 -0.140751025466290 0.136782073002312
AT1G64185_at 1.44919320412947 2.34004431039009 1.63883886163156 1.80462149966797 1.44215223823764 1.08984384599906 1.49968701471835 1.53677797725263 1.66665312118251 1.97018723062623 1.60363634183551 1.63129262081331 1.73237758166316 1.59340500840085 1.62347704128218 1.67019036914594 1.34150598049612 1.79241223632238 1.54532931884640 0.189515247182579 0.196066537685755 0.192407707393650 0.188623088606922 0.194110988943093 0.203436981884983 0.190394874717771 0.187991512179934 0.203087632537012 0.200008657499063 0.189824372227647 0.193719111160279 0.189871250594702 0.191417366164802 0.191137822580366 0.189367461360784 0.189938544660449 0.191207456812223 0.193610504957373 1 1|0 +|/ 23828201 23828788 23828447.556 23828177 23829046 + gene protein_coding_gene FALSE TRUE AT1G64185.1 lactoylglutathione lyase family protein / glyoxalase I family protein similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT5G41650.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79739.1); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) -0.15820712898101 -1.21384704815280 0.250495428926552 1 0.0863117535327791 3.27560838786 -0.15820712898101 0.168370406183085
AT1G48230_at 6.56881919037845 6.66655497515345 6.18809848619041 6.40381677174594 7.22686989460361 6.7571715839634 6.6455699914061 6.81664118654223 6.41002330478318 6.14987440340815 6.70597980226053 6.754416033317 6.77834791775081 6.53126550070978 6.46445295570393 6.30956604304951 6.06080465907122 6.341511511013 6.10288331035196 0.203813940939749 0.184622238090373 0.191773943305993 0.194935880382243 0.193113840166351 0.197137726411913 0.200326571841465 0.192460696091316 0.195872453472949 0.193075414001987 0.190472235758107 0.189485486874796 0.187346206011783 0.193911014069454 0.185229090851497 0.187519656615644 0.203661030910672 0.190192292350769 0.188382340193825 1 1|0 +|/ 17811209 17812233 17811751.556 17809932 17812553 + gene protein_coding_gene FALSE TRUE AT1G48230.1 phosphate translocator-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT3G17430.1); similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07264.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.120979447467080 1.21377367261648 0.250522338396484 1 0.0862330773656651 13.0163027895182 0.120979447467080 0.0957241856313858
AT3G48720_at 9.42597975293375 9.65204357280683 9.6765641479549 9.8541600811246 10.4916846236278 10.2862866459530 10.5023456643873 10.6207397365947 11.1906164936322 10.6920377912978 11.4947332388120 11.3472622764696 11.2218090373308 11.2698744294824 10.812442079157 10.7223040530865 10.2924810725473 11.1903854467223 10.6747199289872 0.0741975501910775 0.073318627428823 0.0796560846057073 0.0769837302643227 0.0744280339100059 0.0795356289090873 0.0784170203780887 0.074512477888938 0.0818236782468833 0.073318627428823 0.0760318416561474 0.0733551862012452 0.0741029158637588 0.077555902580779 0.0789651749980125 0.0747707881051541 0.0773433039665015 0.073318627428823 0.0755328436897887 3 3 + 18059756 18060068 18059930.182 18057308 18060448 + gene protein_coding_gene FALSE TRUE AT3G48720.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G63560.1); similar to Os11g0507200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067952.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD88037.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.109175037939843 1.21345161608326 0.250640475466627 1 0.0858877972913354 21.0119102909262 0.109175037939843 0.0644847869365055
AT2G32220_at 2.44822257761973 3.2383929731992 1.8036368321405 2.63967585073771 2.30161731334848 2.22203221610236 2.47209600173289 2.71446563979657 1.41669123326652 2.23034937048148 2.23316389376082 2.48742685744111 2.31091928553366 1.66407808518966 2.62290978256852 1.79191908836318 2.02350175291501 1.51004059517799 2.24075092042376 0.202290867714981 0.200540455701206 0.202754446213965 0.198142861679387 0.201915864569705 0.200794960130612 0.197481304481052 0.212160873594653 0.212767914070617 0.207210850377689 0.201413128194482 0.200916813458754 0.197481304481052 0.197481304481052 0.199086668203968 0.198337929343251 0.200373872256512 0.206291976085358 0.201615835493927 2 2 + 13686044 13686404 13686199.182 13685996 13686600 + gene protein_coding_gene FALSE TRUE AT2G32220.1 60S ribosomal protein L27 (RPL27A) Identical to 60S ribosomal protein L27-1 (RPL27A) [Arabidopsis Thaliana] (GB:Q9SKX8); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) -0.179328001055006 -1.21313754558698 0.250755725863779 1 0.0855511446272924 4.50156347175601 -0.179328001055006 0.203911517166959
AT3G51120_at 6.91592292707204 7.18065508616194 6.79203922317424 6.832307176188 7.03191483934754 6.85354233974197 6.39557528912799 6.67728092945678 6.35354028791716 6.54999101320036 6.40891319870543 6.38569946103186 6.87170034882442 7.05278421078215 6.6337706226495 7.06119498050454 6.52900539564437 6.00626322435906 6.53355790739658 0.168709551796105 0.171910858053542 0.167831091010260 0.172298073670583 0.173120157123231 0.17838040553569 0.175727800479412 0.176517318688878 0.176057409399007 0.169453152990294 0.186708434853318 0.170851210178117 0.174328424992633 0.175246021807429 0.173494059821240 0.171709305360459 0.177871286626834 0.173987436899784 0.170792471108941 3 3 - 18997009 18997555 18997333.091 18996880 19002989 - gene protein_coding_gene FALSE TRUE AT3G51120.1 zinc finger (CCCH-type) family protein similar to PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G18090.1); similar to Plus-3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54582.2); similar to Os10g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065041.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Plus-3; (InterPro:IPR004343); contains InterPro domain GYF; (InterPro:IPR003169); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.112364515399777 1.21310887761822 0.250766247882128 1 0.0855204186077905 13.3837528095258 0.112364515399777 0.074005798720693
AT1G26970_at 2.40881463916159 2.44141407048038 2.60336438361151 2.54742846548122 2.24042000428646 2.4338899516984 2.29148671411069 2.27445283674904 1.84172433759009 2.21287775251751 2.26589827358001 1.62276677492677 2.18446895049022 2.10505244297290 2.27708369678338 1.99839901335080 2.32650460039790 2.17750030152710 2.00113935373456 0.226538339178154 0.224473118694105 0.229508861037291 0.227219139926338 0.231014228800964 0.224550637295378 0.22995212741998 0.22666369956941 0.224453704457146 0.243731735127277 0.229579824210026 0.231949191240112 0.229085570000767 0.231499980931568 0.225165494890873 0.224453704457146 0.225938968161831 0.227850847362995 0.237629341743439 1 1 + 9360865 9361609 9361292.727 9359669 9361820 + gene protein_coding_gene FALSE TRUE AT1G26970.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G69790.1); similar to putative protein kinase [Solanum demissum] (GB:AAT40481.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.101681205808444 1.21294151270498 0.250827682932162 1 0.0853410494593517 4.47430375221459 0.101681205808444 0.0354286151035884
AT1G75220_at 7.98745098114642 8.48573397840297 8.39698219267943 8.44415919435414 8.83679056498064 8.56788049922876 8.79494174908742 8.73441039538318 8.82156892487219 8.54469200240707 8.83069388014737 8.43069279565175 8.77717598038393 8.86205290067762 8.5123705764506 8.5711320543445 8.49438960304692 8.9491889692461 8.11817922773551 0.138589850592834 0.138765362524238 0.137071949970913 0.136802749463520 0.133612954080812 0.139770343120186 0.133730084818949 0.144256391599966 0.134866509271028 0.143142110480101 0.129055613034889 0.130571739806992 0.134455823481838 0.133852024602265 0.134355200903132 0.129055613034889 0.142437864928001 0.139708760340856 0.140720227506794 1 1|0 -|/ 28233122 28234165 28233719.25 28232818 28236492 - gene protein_coding_gene FALSE TRUE AT1G75220.1 integral membrane protein, putative Identical to Sugar transporter ERD6-like 6 [Arabidopsis Thaliana] (GB:Q9FRL3); similar to integral membrane protein, putative / sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT1G19450.1); similar to 10A19I.3 [Oryza sativa (japonica cultivar-group)] (GB:AAD39600.1); similar to Os05g0579000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056416.1); similar to integral membrane protein [Beta vulgaris] (GB:AAB53155.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.122233773397211 1.21264829508183 0.250935343967123 1 0.0850268451184045 17.1176814344071 0.122233773397211 0.098881969511639
AT2G24255_at 1.19680123187877 0.969074560392515 0.939868454577142 0.83897570877939 1.05986817937245 1.26552067404422 1.0446026506403 1.16040036903920 1.20510640100406 1.55467349445652 1.19643034447006 1.33535874379732 1.90909756963405 0.953647333628968 1.06705056935735 1.27735445358764 1.19084947815920 1.42392766292997 1.56801950168917 0.224484291567414 0.223039314872342 0.233855935051678 0.229643338077345 0.218620953795831 0.219626773579319 0.223736622143452 0.227589813354311 0.237773962830849 0.219428321185799 0.221769798950694 0.225979307780726 0.224595810113033 0.220450612149086 0.226011453087998 0.218620953795831 0.230780529738845 0.227010100629105 0.226794759607269 2 2 - 10323143 10323685 10323430.727 10322595 10324433 - gene protein_coding_gene FALSE TRUE AT2G24255.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G64840.1); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.107523364199371 -1.21262782295669 0.250942862115051 1 0.0850049098306501 2.42779613783824 -0.107523364199371 0.0593809141119779
AT1G50080_at 1.10864601430251 1.09022421093251 1.22524010907405 1.74484235087046 1.02829732429969 1.25492643889369 0.636195446901035 1.22252158746719 0.682740817092067 1.60854410161895 1.30726461901888 1.07844319424391 1.03790170888021 1.21226301016571 0.937338186022357 0.662392652522319 1.17912921110499 1.34798991871390 1.03397494599323 0.234160054801838 0.235990208396857 0.238157827853132 0.239504750846681 0.234160054801838 0.234160054801838 0.234160054801838 0.240921166693378 0.237234859402256 0.237064110677602 0.239910587241673 0.2366426113168 0.241045102313004 0.238639080047477 0.239028318880796 0.234160054801838 0.252615708988974 0.253409357280466 0.237566143086232 1 1 - 18557679 18557904 18557785.6 18557669 18557944 - gene protein_coding_gene FALSE TRUE AT1G50080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60720.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1) 0.142925049283140 1.21261120907007 0.250948963502088 1 0.0849871087355728 2.26574181908537 0.142925049283140 0.141171133393085
AT4G29370_at 2.42162261788261 2.15171049214137 2.32734862825770 2.19572813286593 2.05747748224024 2.05796680983420 1.94546271562242 2.35093242508753 1.96527368513989 1.94727954595334 2.30118259361444 2.44515238564525 2.28166467301021 1.81533024724876 2.00121559427894 2.25395412815485 2.08746632773382 2.51599905616582 1.84845426912394 0.187362082946490 0.190465444376037 0.191903859649361 0.192245514117359 0.18780683173314 0.185226655569563 0.193206594499967 0.193514724735684 0.194727996838082 0.195073239634659 0.192400945400253 0.186610013792546 0.185368070280480 0.189627199585679 0.192130709539566 0.190801646389478 0.195810549447136 0.189587417194114 0.193396729812401 4 4 + 14456148 14456711 14456456.091 14455608 14456744 + gene protein_coding_gene FALSE TRUE AT4G29370.1 kelch repeat-containing F-box family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39560.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.117303996470912 1.21190969418095 0.251206700107313 1 0.0842356297193702 4.25507189256012 0.117303996470912 0.0873167426849212
AT4G02600_at 7.51543556719237 7.3698958358342 7.56349302067386 7.78461058553097 8.04229528988677 7.3780777497362 7.85375227695353 7.71356025313628 7.35394504861525 7.38488341150175 7.33101938568215 7.37055034662096 7.64958770098461 7.72414486942058 7.3395361293971 7.74879918058831 7.53309648427385 7.28896927843854 7.18276934387632 0.157507783820947 0.150670521317889 0.153219786125671 0.1509238639616 0.152182898192714 0.148174996687627 0.148225632997982 0.156618657928869 0.155615690308350 0.158784405054199 0.148174996687627 0.158172267895750 0.150251702296959 0.161735086203378 0.157912246953122 0.150949812537206 0.154119298386142 0.150763928774381 0.152990414037142 4 4|0 +|/ 1146378 1146999 1146623.556 1143962 1147422 + gene protein_coding_gene FALSE TRUE AT4G02600.1|AT4G02600.2 ATMLO1/MLO1 (MILDEW RESISTANCE LOCUS O 1); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 1 (AtMlo1) (MLO protein homolog 1) (AtMLO-H1) (MLO1) [Arabidopsis Thaliana] (GB:O49621;GB:O22766); similar to MLO15 (MILDEW RESISTANCE LOCUS O 15), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G44110.2); similar to seven transmembrane protein Mlo8 [Zea mays] (GB:AAK38344.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.134985916052923 1.21167260818757 0.251293853189527 1 0.0839817307331424 15.0553461673298 0.134985916052923 0.126094227884210
AT2G02170_at 2.54456201540654 2.92234323225183 2.35151782848361 2.13149433864961 3.08484800061011 3.05605843020042 3.30000531269372 3.14037967840861 2.73428716543621 3.47863122206187 3.86136679027792 3.70967589852491 2.96342932739275 2.92670280651901 4.12392621162949 3.52058459166962 3.01609428122132 3.65742776299463 3.92980584011592 0.235718589023965 0.238865408614507 0.228335790945031 0.240776972863092 0.234628940871307 0.240378919207501 0.233042379360774 0.238655519946614 0.236840208809199 0.238332052900572 0.228496552750917 0.233959170880624 0.231379513151434 0.239842216138804 0.230432743228890 0.235891450311462 0.237650948582454 0.233598434250754 0.236264950811693 2 2|0 -|/ 556597 557345 557060.5 556492 558797 - gene protein_coding_gene FALSE TRUE AT2G02170.1|AT2G02170.2 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT1G30320.1); similar to Os02g0116800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045682.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15296.1); similar to Remorin, C-terminal re (GB:ABF93690.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) -0.114675013648433 -1.21148280430331 0.251363642677401 1 0.0837784934720606 6.24305562191307 -0.114675013648433 0.0806958492517183
AT4G13410_at 0.477039582256456 1.23303364653419 0.440468504062732 0.57142700876189 0.695634685672172 0.356044962415035 0.397490401149686 0.548201439363261 1.28464535060899 0.964137757207607 0.560593947469354 1.22203816700877 1.02290046776663 1.01329480665766 0.732584125024751 0.99341497305535 0.525468039822389 1.25884729999355 0.932651628095653 0.194086163715867 0.191921277778508 0.198732797706879 0.202443304790521 0.197145835880134 0.199348717198731 0.204659607370428 0.190130805226176 0.187666206352609 0.193730383926850 0.191443913872584 0.194995373033596 0.201672508605981 0.191119949781863 0.197504709792220 0.191251147997260 0.187666206352609 0.197573901185514 0.192472362405469 4 4|0 -|/ 7792769 7794156 7793211.4 7792215 7795820 - gene protein_coding_gene FALSE TRUE AT4G13410.1 ATCSLA15 (Cellulose synthase-like A15); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLA11 (Cellulose synthase-like A11), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16190.1); similar to ATCSLA03 (Cellulose synthase-like A3), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G23480.2); similar to ATCSLA10 (Cellulose synthase-like A10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G24070.1); similar to glycosyltransferase 10 [Ipomoea trifida] (GB:AAQ62572.1); similar to glycosyltransferase 1 [Ipomoea trifida] (GB:AAQ62570.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -0.14619149702611 -1.21127745727996 0.251439164653064 1 0.0835586396456788 1.57822801560387 -0.14619149702611 0.147524624993443
AT4G16230_at 2.06694257774061 2.1791478395252 2.45275073527826 1.93102702453875 1.68121157255698 2.23497480325088 1.93948998917811 2.67292547296505 3.30254369552533 2.92642387738674 3.29698672247208 3.21608392596892 2.98394719253665 2.90428404274489 2.68798794306564 2.7618611759873 3.22776179430512 3.04611845705372 3.40072210420873 0.29111267655422 0.286690349038627 0.303978551652249 0.292475960273123 0.300105485476609 0.286690349038627 0.286690349038627 0.291679835336843 0.286690349038627 0.28812726794246 0.291457202541590 0.293368805404569 0.286690349038627 0.28737145368002 0.291138526710748 0.286690349038627 0.290346193684913 0.305051509213654 0.297906572200193 4 4 + 9186390 9188522 9187929.571 9185313 9188552 + gene protein_coding_gene FALSE TRUE AT4G16230.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G23540.1); similar to H0404F02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66728.1); similar to Os03g0310000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049914.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.166951544109749 -1.21121181187662 0.251463311355715 1 0.0834883625438938 5.25757148478276 -0.166951544109749 0.183908096812891
AT2G21870_at 10.7407593782738 10.7001523720369 11.0562355914077 10.8719090382235 10.6385461435245 10.5073491041403 10.9922503091796 10.7813102198285 10.3939823501828 10.5381798973044 10.5431038141830 10.7873289115181 10.7065404775627 10.4279048921059 10.8429196206060 10.5523249615653 10.7634729933426 10.7134355091985 10.3289330197306 0.083164098705929 0.0781304881489728 0.0814964022244257 0.0818292176297061 0.0791842287222605 0.0807201847760627 0.0801646680594322 0.078094229112536 0.0789504701447023 0.0818054787895975 0.0799291290379374 0.078094229112536 0.0804507952957715 0.0797418851722937 0.0792140453907135 0.080628322362062 0.0791843572941654 0.0790248643167226 0.0840248002426764 2 2|0 -|/ 9327539 9328736 9328183.8 9327278 9329814 - gene protein_coding_gene FALSE TRUE AT2G21870.1|AT2G21870.2 Identical to Probable ATP synthase 24 kDa subunit, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9SJ12;GB:Q8LBN3); similar to hypothetical protein MtrDRAFT_AC155898g5v1 [Medicago truncatula] (GB:ABE87707.1) 0.105827853965986 1.21093279547956 0.251565964075071 1 0.0831896913550678 21.3298110128683 0.105827853965986 0.0539901684586222
AT4G00940_at 3.35107069119097 3.43319429518233 3.63941061863237 3.69502646940605 2.9462901960953 3.95803682913926 2.8208931926121 2.84105106077680 2.61744942403716 2.59129735362144 2.55671568901020 2.17080999584715 2.32211552800973 2.46498339740003 2.27576118929996 2.45290360218357 2.96671297549165 2.77100372606382 2.65518957229245 0.215816776400539 0.21069104564837 0.20811324270922 0.211303604051043 0.214252081710478 0.213249682900977 0.206671082308755 0.211057946038280 0.209928263008434 0.209550472190623 0.21264729043708 0.215960510964002 0.215508669808171 0.208311839282210 0.21137206459761 0.211621188683399 0.208322762535074 0.206671082308755 0.209907964503874 4 4 - 403342 403820 403599.545 403320 404810 - gene protein_coding_gene FALSE TRUE AT4G00940.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF4.1 (AtDOF4.1) (DOF4.1) [Arabidopsis Thaliana] (GB:Q9M161;GB:O23083); similar to DAG1 (DOF AFFECTING GERMINATION 1) [Arabidopsis thaliana] (TAIR:AT3G61850.3); similar to Dof17 [Glycine max] (GB:ABI16018.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.162226182320305 1.21090780398368 0.251575160306801 1 0.0831629418748772 5.8950906089112 0.162226182320305 0.175961365911026
AT1G52950_at 1.62241716434708 1.07203779209246 1.76890929879441 1.86132281288970 1.13699154965977 1.63594915623484 1.24266956834422 1.30515863999083 1.30427289227540 1.60922900771416 1.42985822374485 1.52131468496521 1.49858787265449 1.36037394275168 1.40206644036553 1.23628439592115 1.32247185836413 1.85056544154307 1.49396244440122 0.209773675916871 0.206359462729477 0.213563482420506 0.206359462729477 0.207637281103671 0.214801724729293 0.216183377478335 0.206359462729477 0.217884961895372 0.212010128459951 0.217964240639101 0.212624238530498 0.211565258554012 0.207810419630400 0.208074697458345 0.211186711936047 0.211140657179162 0.207287483270344 0.207993109829619 1 1|0 +|/ 19730908 19731538 19731280.667 19729151 19731675 + gene protein_coding_gene FALSE TRUE AT1G52950.1 replication protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07630.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.136878994638102 1.21085503623288 0.251594578370059 1 0.0831064636139943 2.91660456729534 0.136878994638102 0.130000949661895
AT1G05290_at 1.26733744257335 1.16833546155522 1.43092564188364 1.35987167259176 0.925300850688107 1.32236254377530 1.30177650429375 1.45039912001360 1.69021207559475 1.53630028589797 1.52931283565858 1.19231598479776 1.46095885113723 1.44112715248663 1.67780810819285 1.41151546497053 1.33610110679676 1.61069849891547 1.71170611029582 0.188555052236174 0.190763279981472 0.188555052236174 0.188739300414719 0.191763150155883 0.197135494726515 0.189728822758050 0.196338800939487 0.193529469045657 0.192661909558244 0.188555052236174 0.193630230033824 0.188555052236174 0.190468355859735 0.188731551596718 0.190188476795157 0.197759863258863 0.202926415947887 0.194933912667755 1 1|0 -|/ 1539178 1539886 1539594.8 1539151 1540561 - gene protein_coding_gene FALSE TRUE AT1G05290.1 transcription factor similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT3G21880.1); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07833.1); similar to Os02g0724000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047975.1); contains InterPro domain CCT; (InterPro:IPR010402) -0.112970014217161 -1.21057901705562 0.251696170430561 1 0.0828110651957616 2.83006494182133 -0.112970014217161 0.0763398101795978
AT1G06020_at 1.82256983547124 1.74187196944464 1.79080228144431 1.74881633990001 1.81552749066988 1.60397463048456 1.53407391047957 2.00284909029867 1.83890785902101 1.81611169754263 1.79931978799438 1.64180530848559 1.53280394198718 2.00473961670262 2.0332368167399 1.86936599857589 1.62280761032457 1.61404169158218 2.24307406371131 0.20917013429715 0.204270895433863 0.211690817257822 0.201325799355991 0.204320569267781 0.204669167340507 0.218366034833395 0.203758907556252 0.212239959504232 0.217159145638204 0.211259733346417 0.213042927957275 0.207817562383461 0.201325799355991 0.210852991365803 0.205657561846996 0.222629934918362 0.216690430228126 0.21504423876605 1 1|0 +|/ 1825517 1826071 1825722.6 1824547 1826100 + gene protein_coding_gene FALSE TRUE AT1G06020.1 pfkB-type carbohydrate kinase family protein Identical to Probable fructokinase-3 (EC 2.7.1.4) [Arabidopsis Thaliana] (GB:Q9LNE4); similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to putative fructokinase 2; S2 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ10000.1); similar to putative fructokinase 2; S1 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09999.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.118413563004059 -1.21049924327963 0.251725538179955 1 0.0827256998458551 3.62295884517779 -0.118413563004059 0.0903835445398824
AT1G04930_at 2.84515890890882 2.78349170518823 2.76634674841446 3.02432258017403 3.48978010319854 3.49790948394823 2.99834399908285 2.78078918374453 3.61000285487689 2.81904170933881 2.84852229159886 3.23281807356356 2.98936291475249 2.74355563134775 2.97267899825234 3.12859611454952 3.16924138830597 3.00817522628232 2.99002884158662 0.203144230643745 0.200913231605091 0.208874552865567 0.196734934030742 0.205872394111787 0.202556714460722 0.197046968561359 0.197688116907493 0.204104172794687 0.207843270184209 0.200982590779194 0.205209291397765 0.205612068401494 0.201187922821169 0.199780861988715 0.208958310269129 0.20707746549002 0.205305377841449 0.202549117956624 1 1|0 -|/ 1396555 1398543 1397855.2 1396292 1399052 - gene protein_coding_gene FALSE TRUE AT1G04930.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT2G32840.1); similar to transposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94827.1) 0.107285737133435 1.20993968096621 0.251931610985888 1 0.0821270337453404 6.09892282163198 0.107285737133435 0.0593833638932059
AT1G48970_at 4.68356475910471 4.93389066485398 5.3462596181842 5.20890014357695 5.76217383283428 4.95680107125421 5.18717035746165 4.61117388015203 4.17838067547241 3.9140443422651 4.14834999721069 3.92505134665312 4.33201217706868 3.22014729159461 4.16333555324241 4.32112243186878 4.22127650167739 3.7265866203278 4.34219719003825 0.237388870633468 0.234370025070022 0.231453037820052 0.240955141048849 0.236497083750705 0.238611423786353 0.23584001216506 0.231453037820052 0.23787029836678 0.240565077259386 0.231453037820052 0.234113741550528 0.239518960004596 0.246751511522483 0.232931158054534 0.2362946455956 0.235963057808201 0.239227110074035 0.231453037820052 1 1|0 -|/ 18117906 18118348 18118169 18117382 18121501 - gene protein_coding_gene FALSE TRUE AT1G48970.1 GTP binding / translation initiation factor similar to eukaryotic translation initiation factor 2B family protein / eIF-2B family protein [Arabidopsis thaliana] (TAIR:AT5G38640.1); similar to Translation initiation factor eIF-2B delta subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97867.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) 0.163472460883085 1.20984577311814 0.251966208059208 1 0.0820265835200163 9.16229644553476 0.163472460883085 0.178332634686621
AT3G62270_at 2.39524809048974 2.26362880187668 2.24275502229821 2.06505505729095 1.72296022072152 1.90975767969067 1.72857189151090 2.34965301304904 1.82215699873086 2.36397055354033 1.9318316680548 2.330572573809 1.72296930763052 1.81770984816898 1.87547028715919 1.76461696858319 2.02557466759659 1.82427567480058 1.73738353878344 0.237580697526556 0.231474437530355 0.238853965532415 0.234358406439859 0.232072390522122 0.228335448110003 0.237688861037899 0.236908847130577 0.231666822078781 0.228972222047871 0.234953247733824 0.231566503204371 0.227171941690393 0.232832334461544 0.231237793691022 0.227171941690393 0.241306911654734 0.233329175119707 0.235803540109782 3 3|0 -|/ 23053507 23054216 23053834.444 23053259 23057023 - gene protein_coding_gene FALSE TRUE AT3G62270.1 anion exchange family protein Identical to Putative boron transporter 2 [Arabidopsis Thaliana] (GB:Q9M1P7); similar to BOR1 (REQUIRES HIGH BORON 1), anion exchanger [Arabidopsis thaliana] (TAIR:AT2G47160.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G06450.1); similar to HCO3-transporter [Medicago truncatula] (GB:ABE78978.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) -0.131009763387053 -1.20936401276736 0.252143755361018 1 0.0815113510287827 4.02776938286275 -0.131009763387053 0.118581718443602
AT2G38360_at 3.21649886441675 3.63708758486312 2.69916872571593 2.96831437798236 2.56570638781979 2.64177444443261 3.29886647893763 3.86557719203911 3.37117430797418 3.63793912060748 4.36760962965413 4.8102596555707 4.15261011397933 4.07155691492211 4.97144608781842 3.67048298254638 3.31702820838114 3.73408561094167 3.86871558968259 0.218654108318703 0.220073023978936 0.216126109120062 0.21607786762961 0.224091137842132 0.215429270078805 0.219013050003922 0.215857010832789 0.218269706981583 0.218277078142300 0.220927394767665 0.219014226365218 0.213173587649437 0.216776220028792 0.217745424468609 0.218327369605828 0.225075729684192 0.232050399004837 0.21373869284229 2 2 - 16076986 16077374 16077199.182 16076693 16077667 - gene protein_coding_gene FALSE TRUE AT2G38360.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G56110.1); similar to prenylated Rab acceptor protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAV65110.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) -0.137412325843915 -1.20935831001660 0.252145857641391 1 0.0815052529715764 6.99303821030832 -0.137412325843915 0.131371360638191
AT3G61970_at 4.60722013735523 4.93902542196059 4.61057958797566 4.8582034556814 4.94118472328305 5.1823284571508 4.7850303374115 4.82710890503859 4.88306806370405 4.51871262997749 5.14469674604832 5.16415293331927 5.62159431830579 5.44016762458905 4.66943952790968 5.24459301944167 4.26546147253172 4.4378335837633 5.22662264568524 0.198680856028043 0.199848971339394 0.201463477388908 0.208508887832678 0.199965532168503 0.220934014776397 0.198743566756052 0.200739541869278 0.214106044650295 0.20296005593054 0.197885408460861 0.202128729256575 0.201088171111593 0.204003508002574 0.212167915495218 0.197885408460861 0.212174956818981 0.221190144543559 0.201588642233604 3 3 + 22963115 22963636 22963358.455 22962438 22963826 + gene protein_coding_gene FALSE TRUE AT3G61970.1 NGA2 (NGATHA2); transcription factor similar to NGA1 (NGATHA1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46870.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.115417906182128 1.20905366782678 0.252258182203909 1 0.0811795245145452 9.7811485530792 0.115417906182128 0.0832342981211458
AT3G47100_at 2.1676856566513 2.30590715517399 2.59675057041583 2.54463440393393 1.84892992451101 2.65099034690565 2.00147200164252 2.68605119460572 2.86927548044932 2.96559621679764 2.44628217844539 2.25595281590899 2.48090889631861 2.17482899514037 2.47604236065762 2.25505112016222 2.61113994607564 2.25264260857534 2.63301110475589 0.284106308500031 0.290634025765732 0.295569254416027 0.304055089235524 0.288318726199892 0.294027120374621 0.29581151078476 0.288906919918038 0.289619206806242 0.315030890321853 0.284106308500031 0.28623207883213 0.294559317986303 0.292989636643454 0.287659027585007 0.298923200978312 0.287965624875645 0.286468250280529 0.2872078557722 3 3 + 17356555 17356797 17356679.222 17356555 17357091 + gene protein_coding_gene FALSE TRUE AT3G47100.1 unknown protein -0.166737088041936 -1.20811550028277 0.252604344012719 1 0.0801768038165734 4.94616951464406 -0.166737088041936 0.184266316878668
AT2G32070_at 8.30048326564937 8.68141084059997 8.39054911390353 8.34724775013004 9.10698362739715 8.75750964012449 8.62326401189758 8.58482534438471 7.97579222907347 7.65392669007502 8.34849394374829 8.20534085886558 8.23154950733676 7.9579963441915 7.6070754287031 8.03810544282015 7.99482751694338 7.78949451527439 8.03617146066657 0.197062070059219 0.198474342600057 0.202207282066068 0.207163940436574 0.20724708966634 0.207255369409452 0.211340361057575 0.205271929443859 0.225006856283051 0.209441415256448 0.203403225018874 0.197062070059219 0.205714433486884 0.214307582852641 0.201473090621715 0.20253844182463 0.204348029051823 0.214136202551596 0.202079258833242 2 2 - 13648021 13648454 13648253.364 13647745 13649030 - gene protein_coding_gene FALSE TRUE AT2G32070.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.2); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.118028492693137 1.20808521193141 0.252615526000412 1 0.0801444410448084 16.5541544849311 0.118028492693137 0.0900201059809038
AT1G78260_at 1.94553901569054 2.03440672024067 2.10734417058415 2.25355735114565 1.50683894391582 2.03796464121485 1.73146907283797 1.92221142464515 1.52945003285597 2.12842387682020 2.22130723653758 2.30382979097125 1.86346535892706 1.78426515224560 1.73526759848414 1.89165486321655 2.10992698144361 2.42807965675262 1.93385227102653 0.193281789117881 0.194209639115717 0.202315822691792 0.198955131229335 0.198330623096576 0.195100115152763 0.197512979004783 0.198263716569761 0.211614593960225 0.202713720271543 0.193281789117881 0.196231635098559 0.195140004378856 0.193281789117881 0.209165489004864 0.194563910196651 0.196946098732069 0.199220852360745 0.195405308925351 1 1|0 +|/ 29453037 29455016 29453933.1 29451878 29455408 + gene protein_coding_gene FALSE TRUE AT1G78260.1|AT1G78260.2 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G22330.1); similar to putative RRM-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37669.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G22330.1); similar to putative RRM-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37669.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.123167785641467 1.20807610620257 0.252618887770728 1 0.0801347117913086 3.89548307089595 0.123167785641467 0.102051336564691
AT1G34210_at 6.34168424347352 6.39910776417825 6.52396306778742 6.52376233554582 7.31184261848413 6.71162323875237 7.55322408186187 7.44982377974606 7.09859408334437 7.99486806166161 7.51167802962452 7.58605022762381 7.7583059024253 7.5749276158325 7.58316799667578 8.17901223028481 7.4441982371731 7.30287522305001 8.0031176593483 0.184332624446503 0.187566772064610 0.190226874473501 0.188710276836111 0.179875244111035 0.191061386608640 0.183431721618781 0.186213981041008 0.185513132274655 0.187155982461451 0.188164199447064 0.179875244111035 0.179875244111035 0.179969073186723 0.184920312944003 0.179875244111035 0.187838452721028 0.179905588369491 0.187446401941511 1 1 + 12462100 12462664 12462324.182 12458648 12462883 + gene protein_coding_gene FALSE TRUE AT1G34210.1 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2); kinase Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. similar to SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G71830.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4), protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13790.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase 1 [Citrus unshiu] (GB:BAD32780.1); similar to benzothiadiazole-induced somatic embryogenesis receptor kinase 1 [Oryza sativa (indica cultivar-group)] (GB:AAR26543.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.124747577060510 -1.20675392991537 0.253107403860192 1 0.0787225775327838 14.5100723250392 -0.124747577060510 0.105868222358181
AT3G28200_at 6.1780969719211 6.50121651433455 4.74061309361988 5.24381112165907 6.0630534897867 6.26024857233895 7.44498867411457 7.39489483865512 7.62163880985689 6.56528464592572 8.89270326957027 8.65142169355709 8.03494383638033 8.56075874533877 8.41907153647697 7.63636413727264 7.27631221279548 7.73549438564034 7.11489352537595 0.226848215343157 0.226088493912074 0.249536365510708 0.249023261531071 0.228370081197763 0.243788668239851 0.239325081810677 0.226839300004589 0.23796105957874 0.22736392710516 0.23863211394332 0.229490935071424 0.228582097852164 0.224649265117264 0.227753970512927 0.223719638920008 0.233270156578586 0.228815421757042 0.234018337315598 3 3 + 10519682 10520098 10519860.182 10519307 10520403 + gene protein_coding_gene FALSE TRUE AT3G28200.1 peroxidase, putative Identical to Peroxidase 31 precursor (EC 1.11.1.7) (Atperox P31) (ATP41) (PER31) [Arabidopsis Thaliana] (GB:Q9LHA7;GB:Q94CB9); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G40150.1); similar to Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] (GB:ABE90190.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.12629480683119 -1.20643281984377 0.253226160573654 1 0.0783797936254698 13.8541101033113 -0.12629480683119 0.109313822783917
AT1G22980_at 0.881755083155905 0.92640517892164 1.25485781643369 1.34506154521576 0.978854776112214 1.33414524417743 0.656072351174781 1.21220393376715 1.55294572887553 1.05437241405065 0.995336150269572 1.89625898820676 0.97811943688685 0.877968376174784 0.738200987274334 0.916104509048763 1.25558121726778 1.3181399570372 0.910743658292096 0.214352231306994 0.213910570063628 0.224243694156881 0.208552220411018 0.219588733345109 0.214487164929853 0.208658272670865 0.215054293126511 0.207257756154406 0.216808409399055 0.218528559000429 0.213783858962983 0.210280383351714 0.23665041026334 0.222499718904195 0.207649906918616 0.215182959842716 0.212985420438089 0.214614793626893 1 1 - 8132767 8133231 8132957.625 8132436 8134339 - gene protein_coding_gene FALSE TRUE AT1G22980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22970.1); similar to Os05g0554500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58733.1) 0.129198572213951 1.20623941387590 0.253297709633015 1 0.078173366201627 2.22099497604158 0.129198572213951 0.115525362163070
AT1G50400_at 2.28096652563179 2.82416103252339 3.03341719920124 2.94481639062587 2.22670043324268 2.32151710307980 2.26402536515490 2.65660094459802 2.79820774496666 3.24345001827731 2.3810561418168 2.20857228313472 2.56114653551016 2.74036463253545 2.64149771403009 2.35239349381603 2.74862625782272 2.51781705371614 2.67338703527417 0.185753565367934 0.188747427875754 0.189736671834958 0.189302149100554 0.189523161240408 0.188732587094653 0.186407645952560 0.19308034417695 0.193884526949730 0.196373632252602 0.186578213789306 0.189138283074065 0.194368889002988 0.187478503446724 0.189430459726550 0.188205905073623 0.189392572815096 0.185753565367934 0.190800555346375 1 0|1 /|+ 18672788 18673805 18673279.778 18671823 18674214 + gene protein_coding_gene FALSE TRUE AT1G50400.1 porin family protein Identical to Putative mitochondrial import receptor subunit TOM40 homolog 2 (Translocase of outer membrane 40 kDa subunit homolog 2) (TOM40-2) [Arabidopsis Thaliana] (GB:Q9SX55); similar to TOM40 (translocase of the outer mitochondrial membrane 40), voltage-gated ion-selective channel [Arabidopsis thaliana] (TAIR:AT3G20000.1); similar to Porin, eukaryotic type [Medicago truncatula] (GB:ABE85742.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) -0.130453177115622 -1.20621922821772 0.253305178089524 1 0.0781518229231293 5.28100022270078 -0.130453177115622 0.118136417697672
AT1G35620_at 8.65937945033021 8.67711168695221 8.19293554045028 8.2691941523737 8.94345726972163 8.39219945920128 8.49774853815569 8.51534064479642 8.82871467399127 8.64600756251166 8.78413048515593 8.76879180051625 8.88549995806195 8.76581331490426 8.51302131263557 8.75969995239082 8.54184143896485 8.47765402607056 8.89559795640093 0.117911024009756 0.117289345085542 0.114539649168516 0.123112725990151 0.126428368421941 0.118708344342695 0.122160269458823 0.115946288307383 0.125605456931500 0.116965063515559 0.120361999739531 0.114539649168516 0.119516379120508 0.125328693619627 0.116297639414845 0.120232747927986 0.123239011103170 0.118048570530709 0.115691348121483 1 1 + 13157596 13158184 13157983.545 13156346 13158445 + gene protein_coding_gene FALSE TRUE AT1G35620.1 ATPDIL5-2 (PDI-LIKE 5-2); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-1 (PDI-LIKE 1-1), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G21750.2); similar to protein disulfide isomerase [Zea mays] (GB:AAX09969.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) -0.120499334751170 -1.20604939073572 0.253368022899840 1 0.0779705733722771 17.2570024762754 -0.120499334751170 0.0964031700050197
AT4G29590_at 8.85529713903419 8.63959691289756 8.5424247741824 8.31971874586326 8.99083861138048 8.37721132845198 9.72813651219736 9.42404257021835 9.19194317091228 9.14350435014007 9.28417699108616 9.34610631713216 9.12072693475649 9.34621263161482 9.41428282776303 9.78909416669578 9.15648515313909 9.53447237818704 8.79140060434567 0.122428577454299 0.121504593325038 0.130415891460995 0.126785044711811 0.121504593325038 0.134898608885746 0.121504593325038 0.124273745620446 0.126958198709257 0.125722238156788 0.125930240754358 0.123093182270973 0.121504593325038 0.124425964944672 0.121504593325038 0.125146070682927 0.131842664332459 0.122661453759559 0.125444094600293 4 4|0 -|/ 14512746 14513697 14513096.857 14512555 14514498 - gene protein_coding_gene FALSE TRUE AT4G29590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01660.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79229.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.136278976018256 -1.20512424446633 0.253710571702658 1 0.0769835967188448 18.0677720160346 -0.136278976018256 0.130094772153859
AT4G22050_at 0.701042166128271 0.483155548873137 0.41369886904698 0.961452618546343 0.618730744572753 0.706907485886844 0.783332885784089 0.670609308097279 0.747330546109454 1.09123706600595 0.746617884960495 0.434987776080278 0.8915083205292 0.4971125807942 0.793696201435134 0.592136625876074 0.705739889787068 0.767133714594998 0.989228903851372 0.207307110968900 0.211843441433123 0.222944661631213 0.210328141213897 0.207669574631866 0.207307110968900 0.214767307904602 0.207307110968900 0.238147932095209 0.230436128343878 0.223080559544264 0.207307110968900 0.212090312930596 0.221480585004698 0.207307110968900 0.208094797264602 0.216451339533389 0.210822740397698 0.211524571493043 4 4 + 11684617 11685440 11684971.5 11683877 11685656 + gene protein_coding_gene FALSE TRUE AT4G22050.1 aspartyl protease family protein similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G69100.1); similar to PREDICTED: similar to CG1548-PA isoform 1 [Tribolium castaneum] (GB:XP_966517.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.124159881052938 -1.20496177415964 0.253770766680076 1 0.0768103262882471 1.47797393482335 -0.124159881052938 0.104978800483481
AT2G38690_at 0.903547124054435 1.02830061752074 1.05533695365912 1.09778998481714 0.921468597531924 1.37390419455791 0.574996252142900 1.00808293137020 0.909797500944352 1.54595539047254 0.955122339344256 1.09857700072166 1.39141161259875 1.14001996491155 1.15117848198581 1.45174308519124 1.33352359071688 1.47029939804385 1.23104395254066 0.228943342726186 0.218004094706863 0.218186028573389 0.213744348120958 0.214982288353023 0.228063137479497 0.219026854678329 0.217783739508563 0.213744348120958 0.226433635757492 0.215773693599101 0.214729557684167 0.223604438189079 0.213744348120958 0.220109796655157 0.223030067715497 0.216130341038992 0.232190896693275 0.220633825634301 2 2|0 -|/ 16183588 16184595 16184224.2 16183554 16184741 - gene protein_coding_gene FALSE TRUE AT2G38690.1 unknown protein 0.126722677119759 1.20411514496950 0.254084625135668 1 0.0759076997374135 2.23438668971101 0.126722677119759 0.110758734541052
AT3G61200_at 7.48399102162487 7.73456896884648 7.68654830112385 7.82782740185283 8.1906960083233 7.2306756087387 7.57723628143665 7.76863251933422 7.79957337189122 8.14124549175799 7.34142835651059 7.31375581452663 7.59796439146255 7.93550744395688 6.95506198345749 7.53588243951658 7.6500275639573 7.68455018631629 7.81283793112133 0.194015968146035 0.191440956381998 0.206258167030607 0.198501774503986 0.19629010668004 0.221011468656991 0.195171816902525 0.193019133411502 0.209663709054658 0.189029494225541 0.199763291277393 0.196448117426968 0.195904039823937 0.196954548990394 0.204553999656474 0.195049056206735 0.221009814383432 0.193092509854667 0.194079526142908 3 3|0 -|/ 22668593 22669264 22669003.444 22668430 22669365 - gene protein_coding_gene FALSE TRUE AT3G61200.1 thioesterase family protein similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G04290.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07026.1); similar to Os07g0463500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059584.1); similar to Os07g0462700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059581.1); contains InterPro domain Thioesterase superfamily; (InterPro:IPR006683) -0.161641846797343 -1.20391058445732 0.254160505122037 1 0.0756896802376159 15.3973509492701 -0.161641846797343 0.176568410399009
AT1G61550_at 0.662082679783844 0.496939881370179 0.853922201691353 0.838812106838246 0.259350829642396 0.544766874187273 0.90609573118957 0.47749587946664 0.98023091696309 0.743098533063209 0.470174069439965 0.445883405337842 0.708974379711754 0.964965125769648 0.319103836228796 0.570008760790436 0.85007452888592 0.692195353563811 0.839802286079416 0.205230831790220 0.203434028807021 0.204033098165947 0.205423994805634 0.208518628128987 0.207092902818839 0.203434028807021 0.203434028807021 0.209182196883579 0.207150191084297 0.210742210693442 0.203434028807021 0.209240787182097 0.206028185177501 0.208992647762423 0.204745214713053 0.208081882822594 0.203434028807021 0.204845549820675 1 1|0 -|/ 22708534 22709022 22708738.5 22708531 22711491 - gene protein_coding_gene FALSE TRUE AT1G61550.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G61420.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.119072676382646 -1.20355081668145 0.254294001614076 1 0.075306308687548 1.37095811193848 -0.119072676382646 0.0936193119304582
AT2G30560_at 4.25001071307004 3.94988538461469 4.36778721700482 4.24524616029182 3.99591011214716 4.08562155300348 4.17899251514455 3.83656160104623 4.66446520041495 4.30545512708227 4.80212971202165 4.22557444664742 4.31262513865573 4.47529836632459 4.8347678461971 4.24278541906134 4.70142403250266 4.74559927801221 4.32813887812222 0.159464546789544 0.165714409710904 0.161170682299684 0.1592862384789 0.154248474302616 0.157755675574972 0.160168780194869 0.15538764953128 0.161031549475903 0.162426266118819 0.159353930723282 0.155698757602137 0.162410790576680 0.163480966370594 0.158874506920265 0.159872878708081 0.16363069349471 0.158777971650031 0.153799644395144 2 2 + 13024427 13025902 13025233.091 13024424 13025934 + gene protein_coding_gene FALSE TRUE AT2G30560.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G46730.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001070790.1) 0.114808917598817 1.20335379999411 0.254367130815049 1 0.0750964022764539 8.60135787294084 0.114808917598817 0.0830659857006602
AT4G31170_at 9.57008252530338 9.6194722523223 9.786448263552 9.7651509921863 9.57025506878333 9.49591555942906 9.23016233231156 9.09260548206996 9.5576798443589 8.96584348969524 9.40284161271166 8.93344469433342 9.20124084588273 9.31626022290417 8.5628557267112 9.1626715753612 9.270157155228 9.16416514474651 9.0874844848834 0.109083734910015 0.10584184503479 0.112911772159939 0.113399856988185 0.109178016211758 0.116409581999812 0.111352119015413 0.113366655843561 0.117564425583838 0.120678780403656 0.107684793237782 0.110755802149123 0.110636351242831 0.10584184503479 0.10874921139939 0.106130886060387 0.116770946080104 0.118603429084840 0.116478399254433 4 4 - 15153601 15154155 15153835.091 15153188 15155683 - gene protein_coding_gene FALSE TRUE AT4G31170.1|AT4G31170.2|AT4G31170.3 protein kinase family protein|kinase similar to serine/threonine/tyrosine kinase, putative [Arabidopsis thaliana] (TAIR:AT2G24360.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06448.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06449.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0996985861207769 1.20310185917877 0.254460671252576 1 0.0748280157051388 18.6814485071018 0.0996985861207769 0.0286148744338228
AT1G27410_at 2.90657009406328 2.68654862800866 3.37327307486298 3.00620017563037 2.98615672880639 3.34761529866412 3.14935952369886 3.53416029531392 2.8058711957497 2.80121699078954 2.89738751211182 2.63709110468851 3.2204017641492 2.65145081582682 2.81432626476885 3.12603913503343 2.96799195783763 3.341377152747 2.81234108366344 0.196704683866122 0.198162079040951 0.200874142353822 0.202054037052866 0.203068980683994 0.207483955732942 0.199275989987717 0.200361766146335 0.197988980759521 0.200241217568138 0.198639377302137 0.19617329779767 0.198430555521046 0.199280984137664 0.200760913948641 0.19617329779767 0.204115123449235 0.19617329779767 0.203351868594622 1 1 + 9518155 9518541 9518397.364 9517188 9519012 + gene protein_coding_gene FALSE TRUE AT1G27410.1 DNA cross-link repair protein-related similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.3); similar to Os01g0783400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044453.1); similar to hypothetical protein LOC768137 [Danio rerio] (GB:NP_001070751.1); contains InterPro domain DNA repair metallo-beta-lactamase; (InterPro:IPR011084) 0.129841737107149 1.20291175435710 0.254531271348722 1 0.0746255293057191 6.00547779577923 0.129841737107149 0.117610461597129
AT1G27820_at 2.30607682826366 2.03120803988203 1.95114255606788 1.73732527034013 1.75816303579401 1.86175623811349 2.33072029196075 1.77144215441209 2.13269501177623 2.07289409158513 1.98969388401363 1.71474198798270 1.92836192596450 2.48805827126900 2.04529253516402 1.82717674153035 1.86986240922138 2.03526491078541 1.68076919336948 0.222876920552401 0.228773640289433 0.215694809652028 0.226362647146755 0.216430689906497 0.223683139238934 0.219925233543049 0.221182349632089 0.227817618174470 0.227875123706821 0.218951017384411 0.229015375490549 0.217226867355618 0.226038110656606 0.224235951687258 0.220150277586268 0.218177929406356 0.231961312997197 0.215218506393662 1 1 + 9691995 9692499 9692316.5 9691615 9692547 + gene protein_coding_gene FALSE TRUE AT1G27820.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G27890.1); similar to putative CCR4-associated factor 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68660.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.128788951276494 -1.20290560124323 0.254533556718706 1 0.0746189758367936 3.94319230959675 -0.128788951276494 0.115415171048195
AT1G54890_at 2.0803449586999 1.93908123371870 2.45705813860507 2.10771658108298 1.95392978731335 2.25701713381395 1.63419920530030 1.89961491001810 2.0816123886816 2.0675869844322 1.88132606881159 1.63709936059771 2.60990877845597 1.93355994034666 1.99623220252966 1.38283962641309 2.33480830455332 2.20639272681853 2.04228912918026 0.207500482476398 0.203149987079761 0.208799274464779 0.222365149774298 0.208593352749124 0.207302874437015 0.205437975453244 0.203149987079761 0.213522116684311 0.210160180799224 0.211355058154955 0.206515586482735 0.21577301969403 0.214149972047825 0.208827125911094 0.209804865232404 0.214713583749822 0.21283373155758 0.213060029600432 1 1 + 20467493 20468021 20467738.636 20466750 20468137 + gene protein_coding_gene FALSE TRUE AT1G54890.1 late embryogenesis abundant protein-related / LEA protein-related similar to late embryogenesis abundant protein-related / LEA protein-related [Arabidopsis thaliana] (TAIR:AT5G54370.1); similar to Curculin-like (mannose-binding) lectin; Root cap [Medicago truncatula] (GB:ABE80074.1); contains InterPro domain Root cap; (InterPro:IPR009646) 0.119780854285359 1.20285927237057 0.254550764564718 1 0.074569633358892 4.07192043198429 0.119780854285359 0.0954632018554544
ATCG01090_at 13.2683830808171 13.6054186665851 13.639683864971 13.6761868490779 13.5684021145898 13.0501234081151 13.6655160182808 13.7252502821057 14.5390088363238 14.4223176241257 14.9252025414244 14.9172423889010 14.8375691773789 14.7100542158071 14.7341322051575 14.7808174162844 14.4441641352837 14.8766748827053 14.3750630612527 0.0766021605605548 0.0766738571401119 0.0854455817645259 0.0785134683957377 0.077444824230771 0.0860335546506671 0.0786707214184087 0.0785210920524911 0.0815888159316027 0.0766281818572172 0.0774294491945823 0.0766021605605548 0.0766021605605548 0.0823049925465679 0.0785987269151099 0.0766021605605548 0.0850319068450331 0.0792719345231035 0.0766021605605548 C C - 119318 119738 119572.727 119244 119762 - gene protein_coding_gene FALSE TRUE ATCG01090.1 Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex Identical to NAD(P)H-quinone oxidoreductase subunit I, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) (ndhI) [Arabidopsis Thaliana] (GB:P56755); similar to ATMLO14 (ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14), NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] (TAIR:AT1G16700.1); similar to NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) [Arabidopsis thaliana] (TAIR:AT1G79010.1); similar to NADH dehydrogenase subunit I [Nicotiana tabacum] (GB:NP_054561.1); contains InterPro domain NADH-quinone oxidoreductase, chain I; (InterPro:IPR010226); contains InterPro domain NADH-plastoquinone oxidoreductase, subunit I; (InterPro:IPR004497); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450) 0.125112996854184 1.20235402748991 0.254738486723726 1 0.074031615328331 28.1367181827021 0.125112996854184 0.107670942315039
AT3G32090_at 2.33002055031914 2.16158411362865 2.51164240748471 2.78531537117425 1.56537162777314 1.74899502158157 2.02659709408930 2.08166110511482 2.28782225384961 2.24867719908216 2.17386312371067 1.88588373008067 2.24382477505854 1.77844505357587 1.85434322188976 2.18204516092692 1.88385371650159 2.28386938083553 2.2288089612083 0.191434565179657 0.190557197623755 0.192923185904190 0.198987706471424 0.189162555619282 0.190613798986178 0.190540450027867 0.195806398531665 0.189162555619282 0.192831753649185 0.194566485812998 0.190492728510095 0.191363952895446 0.195141557150768 0.189162555619282 0.189736783792435 0.193852146591211 0.193289673632786 0.192912534964546 3 3|0 +|/ 13082671 13083604 13083060.333 13082669 13083634 + gene protein_coding_gene FALSE TRUE AT3G32090.1 transcription factor-related similar to WRKY40 (WRKY DNA-binding protein 40), transcription factor [Arabidopsis thaliana] (TAIR:AT1G80840.1); similar to transcription factor wrky [Brassica napus] (GB:ABA71354.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.108235696587736 -1.20205780330848 0.254848599020177 1 0.0737162547602784 4.2968328239136 -0.108235696587736 0.064755131386939
AT2G48040_at 6.89500467691948 6.72377944197241 6.69969142402712 6.5833471819895 7.62252142261944 6.69035700584401 6.90665912564722 6.51956301235332 7.41409543378632 7.4324112686286 7.33930595444116 7.09950338234444 7.28257057598616 7.31354624753968 6.28643801899828 6.91931247392335 6.85023453818885 6.93471522137853 7.54977903781505 0.208533182289135 0.209994880138640 0.214523845370171 0.220194480807361 0.210134831757269 0.211264210279833 0.214269990074072 0.213392806547544 0.213026127755493 0.207565906381534 0.209851072121194 0.207962194752111 0.207565906381534 0.209842820258058 0.207993807808769 0.208106307322873 0.218603142342883 0.210740776583064 0.207565906381534 2 2|0 -|/ 19658665 19659515 19659144.222 19658266 19659835 - gene protein_coding_gene FALSE TRUE AT2G48040.1 similar to Os01g0388500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043105.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69280.1); contains domain UNCHARACTERIZED (PTHR13167); contains domain UNCHARACTERIZED (PTHR13167:SF2) -0.162248792039842 -1.20089811255676 0.255280042369928 1 0.0724822049875491 14.0644313522599 -0.162248792039842 0.178307447443652
AT3G46230_at 2.30679285267702 1.72535070173826 2.54212787561467 2.40075439005497 1.76553907334607 1.92827014645662 1.80158983068748 2.27880035723071 1.78126924054800 1.70504368760388 1.63900745481658 1.54848655748329 1.73317005137364 1.88003782842306 1.84643507152697 1.99997178413559 2.37194168850872 1.86723481254178 1.65804160217066 0.209811280460664 0.208675711403927 0.215920919749495 0.215293168575417 0.210083211863123 0.212258580985072 0.212858991030414 0.210500733161553 0.219030230751867 0.218233726145850 0.209550591708363 0.214082692023023 0.221980710761275 0.216177601750127 0.213299228129673 0.208675711403927 0.208675711403927 0.216269737968345 0.208675711403927 3 3 - 16995261 16995694 16995494.091 16995103 16995826 - gene protein_coding_gene FALSE TRUE AT3G46230.1 ATHSP17.4 (Arabidopsis thaliana heat shock protein 17.4) member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds Identical to 17.4 kDa class I heat shock protein (HSP 17.4) (HSP17.4) [Arabidopsis Thaliana] (GB:P19036;GB:Q94EJ5;GB:Q9LX72); similar to 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) [Arabidopsis thaliana] (TAIR:AT1G53540.1); similar to low molecular weight heat-shock protein [Brassica rapa] (GB:AAB72109.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.138520124222535 1.20082025025184 0.255309030487892 1 0.0723993820432527 3.88143840324675 0.138520124222535 0.135411567374152
AT1G48500_at 1.08585969755606 1.63446217580791 1.39101244746649 1.26060935568061 1.27146492151286 1.40189273119032 1.29410063471746 1.27554486296162 1.59079975548531 2.20102100226081 1.47593741717719 1.11965167645145 1.79064258437961 1.58213872878676 1.72377456316036 1.37170632592105 1.6149930434282 2.10377142288819 1.75753755876952 0.221668295915837 0.221668295915837 0.229118615556795 0.223659656742454 0.222700594447273 0.221728546486870 0.223439326584638 0.236664961938653 0.240420713967735 0.221668295915837 0.224360899902592 0.228499519333082 0.224991039392932 0.224922176257113 0.221668295915837 0.221668295915837 0.242195855613297 0.230056615813916 0.229673945598223 1 1 + 17937217 17938059 17937580.625 17935144 17938330 + gene protein_coding_gene FALSE TRUE AT1G48500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17860.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAD04851.1); contains InterPro domain ZIM; (InterPro:IPR010399) -0.121603057014653 -1.20065653890632 0.255369988707451 1 0.07222525366469 3.05067489125132 -0.121603057014653 0.100211258885942
AT1G77020_at 1.22774054507952 1.48714702967639 1.43131746200645 1.18064596426432 1.35131251308631 1.31317411056266 0.747673888053671 1.07566802061378 1.53315642006669 0.764333123558758 1.29209439414603 1.60610779684622 1.26061026870590 0.948789131594682 1.78919474521521 1.14956849256174 0.553713574402454 1.64983993814896 1.40924417458275 0.184343042409083 0.202030131789240 0.187110643195207 0.17950416974787 0.194620261577582 0.182312090876959 0.189555181537568 0.184143819086879 0.193781017320309 0.189240108793289 0.180824870119357 0.183117966575554 0.181855184130433 0.184301037072161 0.185502437534621 0.17950416974787 0.193661738757224 0.188853772836706 0.189874768280557 1 1|0 -|/ 28949986 28950918 28950354.444 28949737 28951925 - gene protein_coding_gene FALSE TRUE AT1G77020.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76700.1); similar to Os09g0493800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063548.1); similar to DnaJ-like protein [Brassica juncea] (GB:AAW50121.1); similar to Os02g0555700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047124.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.115108514128672 1.20015016330131 0.255558611733728 1 0.0716867694092005 2.48524379105391 0.115108514128672 0.0846310935595263
AT3G56350_at 1.39176419495357 1.39033169421126 1.37445173871986 1.42534833618305 0.71413586271297 1.13431476750876 1.16965525548256 1.64471166399017 1.14108739811844 1.40162597963909 1.29650561379412 1.21034284080752 1.02242736615647 0.945288256173736 1.49792990547788 1.25722710932575 1.11771893802272 1.66418393520509 1.25635691223768 0.197306796069796 0.207707271736021 0.203900795379783 0.200886337174506 0.205935047578202 0.208012624726578 0.207704321251805 0.204928836233532 0.199971624861012 0.203061791354239 0.204156577154099 0.200199675733914 0.20638542574964 0.202239704490098 0.199822040444694 0.196716297697254 0.209121440962178 0.20475527215841 0.200192765609062 3 3|0 -|/ 20905160 20906415 20905894.1 20904925 20906604 - gene protein_coding_gene FALSE TRUE AT3G56350.1 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative similar to MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1), manganese superoxide dismutase [Arabidopsis thaliana] (TAIR:AT3G10920.1); similar to MnSOD [Gossypium hirsutum] (GB:ABA00455.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -0.125978396794777 -1.19991268354274 0.255647110143165 1 0.0714342898180282 2.53949406869635 -0.125978396794777 0.110107030297033
AT2G35600_at 3.04573287183946 2.7330284079864 2.94108063758804 3.05713208254102 2.53650695269779 2.72426553664503 3.05174343283944 3.3257144062727 3.38412469076240 3.56181343994312 3.50018954948665 3.34755732670729 3.79129476492763 3.11060161316826 3.7966412998762 3.33145198293972 3.01253189541669 3.99390369367286 3.52089825848775 0.223568248351857 0.215558467806526 0.219830680325190 0.215604184519333 0.218804386784990 0.213629874218726 0.229882198606887 0.212169449015928 0.228925375489560 0.22609269171587 0.212169449015928 0.214792311508804 0.219431802748257 0.219500648279076 0.214529087786898 0.212853472199051 0.22298116721097 0.217903794010888 0.215917621474326 2 2|0 -|/ 14948341 14948983 14948598 14947924 14952436 - gene protein_coding_gene FALSE TRUE AT2G35600.1 BRXL1 (BREVIS RADIX like 1) Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. similar to NIP3,1/NLM9 (BREVIS RADIX), identical protein binding / water channel [Arabidopsis thaliana] (TAIR:AT1G31880.1); similar to Os02g0700700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047842.1); similar to major intrinsic protein, putative [Solanum bulbocastanum] (GB:AAP45183.2); similar to Os08g0462700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061986.1); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591) -0.113866212328267 -1.19989962902197 0.255651975702244 1 0.0714204118227864 6.41413403047065 -0.113866212328267 0.0814581004382356
AT2G27270_at 1.49279950267444 1.23223418085337 1.06905166800031 1.34581308763568 1.11940406937320 1.42100792413561 1.46293821736881 1.11320851425351 1.87388614088241 2.12067713481891 1.7840406761223 1.63323166763625 1.84127392907038 1.80086670142136 1.28126803528760 1.71929694299704 2.14946208562751 1.91680023203845 1.78122439276189 0.217167232875220 0.213075784582406 0.211104534232136 0.214024838957316 0.215932629793796 0.215802851162827 0.220283669762532 0.213082468483723 0.210619339373986 0.215624243958101 0.215377435778809 0.210551059962401 0.215617363343076 0.217343814915504 0.22484955992862 0.212579741972935 0.221818548975796 0.221450060339788 0.219855217555557 2 2|0 +|/ 11679626 11680172 11679843.5 11679349 11680286 + gene protein_coding_gene FALSE TRUE AT2G27270.1 similar to harpin-induced family protein / HIN1 family protein / harpin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G01410.1); similar to Os02g0538700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047054.1); similar to Os04g0416700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052766.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.122979219440312 -1.19988034677788 0.255659162534655 1 0.0713999134680916 3.12757844050162 -0.122979219440312 0.103510260021402
AT4G28420_at 2.22092441484708 2.22187427212357 1.57384153908696 1.69084125574610 1.77494964058755 2.0342172732856 1.48524184009316 1.71589168885771 1.07967126389518 1.41711205944532 1.22335653923514 1.48251033487168 1.37195198121020 1.35097481549670 1.6807703578382 1.51859085439675 1.99804007788674 1.71260774372031 1.05708340156502 0.200066950915084 0.200084095182325 0.193551295982386 0.203884432584088 0.198117881265979 0.204903951565134 0.199269961019917 0.193500888617623 0.200677926868545 0.202364113622467 0.197841805365147 0.196774474861824 0.20413515370723 0.202143776183172 0.196044512065833 0.194529760093339 0.198817444541329 0.194601933336058 0.194471092329938 4 4 + 14056444 14057091 14056813.909 14055667 14057598 + gene protein_coding_gene FALSE TRUE AT4G28420.1|AT4G28420.2 aminotransferase, putative|transaminase similar to SUR1 (SUPERROOT 1), transaminase [Arabidopsis thaliana] (TAIR:AT2G20610.2); similar to Os02g0302400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046626.1); similar to putative nicotianamine aminotransferase A [Oryza sativa (japonica cultivar-group)] (GB:BAD23582.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839)|similar to SUR1 (SUPERROOT 1), transaminase [Arabidopsis thaliana] (TAIR:AT2G20610.1); similar to Os02g0302400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046626.1); similar to putative nicotianamine aminotransferase A [Oryza sativa (japonica cultivar-group)] (GB:BAD23582.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.107603734821481 1.19986219334455 0.255665928785931 1 0.0713806153420175 3.20320903043703 0.107603734821481 0.0633741428548217
AT1G05020_at 1.97994112201968 1.80473031863579 2.09782294302379 2.03529615358883 1.73814968202593 1.80682933345149 1.98740801891216 2.04517448038554 2.20474663997280 2.20522828928987 1.96460371663650 2.24145349510007 1.93494656412640 1.99875514497741 1.83827729050405 1.8223107815707 2.09801721314285 2.04202257870734 2.06715795033615 0.182057714333340 0.177229556792395 0.184063319195390 0.180458056411733 0.187150555519138 0.179124093001825 0.178543471204046 0.177419036209647 0.179653425376953 0.183708686102749 0.179698325822183 0.178877934682647 0.188785970085415 0.177229556792395 0.187966854939033 0.194899578951781 0.177389918357169 0.189103939857896 0.180369651997479 1 1 - 1435526 1435918 1435693.727 1435253 1437666 - gene protein_coding_gene FALSE TRUE AT1G05020.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related Identical to Putative clathrin assembly protein At1g05020 [Arabidopsis Thaliana] (GB:Q9ZVN6); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT4G02650.1); similar to Os03g0275500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049708.1); similar to putative clathrin assembly protein [Oryza sativa (japonica cultivar-group)] (GB:AAV25008.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.100642451034862 -1.19984572222638 0.255672068118071 1 0.0713631058008984 4.01271532715304 -0.100642451034862 0.0357441815457957
AT2G29510_at 6.57822414377225 6.86812945446094 5.87326509814562 6.24849012053853 6.36786700527777 6.48904196799991 6.23630670394009 6.80914032225615 6.72343933427665 7.20504415501286 7.16301164076266 7.1724674373989 7.15193783088752 7.1984957956456 6.65759888046805 7.06843103112992 6.8230248447227 6.55819025456194 6.67390311928477 0.205587890093853 0.202994874296965 0.2164292703077 0.206116748862838 0.209154687086967 0.206309653798462 0.207436229882092 0.206317648783238 0.213896077417948 0.211249829797268 0.205707529033091 0.204367745391603 0.200174050040039 0.210679805221019 0.205944559180229 0.210905724206708 0.203604194547729 0.212442324402580 0.203141553533561 2 2 + 12644255 12644886 12644502 12641591 12645095 + gene protein_coding_gene FALSE TRUE AT2G29510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59020.1); similar to hypothetical protein MtrDRAFT_AC146330g22v1 [Medicago truncatula] (GB:ABE90884.1); contains domain Transcriptional factor tubby, C-terminal domain (SSF54518); contains domain no description (G3D.3.20.90.10) -0.135800798263916 -1.19959281203401 0.255766350828236 1 0.0710942734212225 13.3546115607015 -0.135800798263916 0.130385019522302
AT3G59710_at 1.51671362515857 1.29607594150222 0.97199868918195 0.622701393933463 0.961516663155467 0.984275852835146 1.44298228904194 1.21816496168772 1.11552406082579 1.04645521045637 0.79402624446479 0.96077074836645 0.265022176604401 1.36251797422111 1.47234048191587 1.13921661077069 1.78380263018362 1.17406810454126 0.42792936085256 0.212842268936179 0.214695849346293 0.219496814794626 0.205440842272847 0.204914285912653 0.203006176162230 0.211383005989632 0.205915778040753 0.224780645086159 0.209115765524467 0.204957763752684 0.210772980464559 0.207043817368150 0.208070665759645 0.222483535165354 0.206757971271426 0.214603134271854 0.232113660003649 0.205061053056584 3 3 - 22066280 22067145 22066566.909 22065914 22068133 - gene protein_coding_gene FALSE TRUE AT3G59710.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G51030.1); similar to putative short-chain hydrogenase/reductase [Musa acuminata] (GB:AAR96014.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.113846655282911 -1.19955789997486 0.255779367905874 1 0.071057166769216 2.11794042644294 -0.113846655282911 0.0814921007175382
AT3G02640_at 1.90374694975327 1.80947762541670 1.49974782654464 1.22210149926238 1.33881162564282 1.21019981934785 1.73862047975767 1.94718299118232 1.99951512592160 2.54946791632325 1.93046683628239 2.45094148729936 2.60800548203496 2.67761068440724 3.32041006390039 2.35429596875935 2.23772597933811 2.72110775698778 2.11811910561150 0.227093784531737 0.224160223701031 0.229530061220339 0.221774239565094 0.223491479270106 0.229254446005399 0.226184755755311 0.220100099722466 0.231496161585001 0.220100099722466 0.220100099722466 0.220869866460933 0.225230555360756 0.223226271535703 0.241534610875587 0.220100099722466 0.225041133332035 0.221511267986336 0.224326067080387 3 3 - 565191 565559 565322.091 564891 565715 - gene protein_coding_gene FALSE TRUE AT3G02640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16250.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78001.1) -0.108419334535328 -1.19922505333775 0.255903497284607 1 0.0707034377289956 3.96370505961094 -0.108419334535328 0.0661271526946729
AT4G14370_at 0.662703519271482 0.399547126165035 0.45907892384601 0.587948889798095 0.51314552715661 0.885232373628485 0.340290039155297 0.672405012539337 0.923165976584834 0.549665351829843 0.700562597623779 0.454855836428338 0.864834606146901 1.23076242736987 0.708626161703158 1.02432241678524 0.754852846700481 0.935044193843632 0.57928696313563 0.210906569243076 0.210115748359873 0.210115748359873 0.214222128110889 0.213686319451069 0.213452060809453 0.218814201994150 0.210710199973261 0.215473793796797 0.221626406114788 0.210115748359873 0.215137672631173 0.214532749580249 0.215093362414795 0.210448948209971 0.214886347041922 0.22044939728714 0.221982794136948 0.214639313968426 4 4|0 -|/ 8274349 8274988 8274832.2 8274309 8283259 - gene protein_coding_gene FALSE TRUE AT4G14370.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G16870.1); similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G23270.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G38850.1); similar to putative regulator of chromosome condensation protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44179.1); similar to H0723C07.10 [Oryza sativa (indica cultivar-group)] (GB:CAJ86040.1); similar to Regulator of chromosome condensation, RCC1 [Medicago truncatula] (GB:ABE91733.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.121404104816459 1.19915406019437 0.255929979129676 1 0.070628000055007 1.32417995961602 0.121404104816459 0.100103968355722
AT2G37310_at 1.97799137192588 2.08708662216467 2.0193033041279 1.70737992428959 1.46729149693506 2.19656166611015 1.81807726754507 1.74754933053357 1.97930788865331 1.86866518948595 1.56585683001464 1.69491352131233 1.60182732387228 1.60300358254492 1.45562593844688 1.41008772862555 2.09369371050671 1.55008312094183 1.67898523630217 0.17100603157418 0.173278239553193 0.170304260374439 0.176599979492527 0.181232511471912 0.175468896805843 0.181661410512748 0.171389619433228 0.178018774851537 0.172740766134482 0.174213501842065 0.174307915666845 0.172691531725534 0.178785881458075 0.172188222052967 0.171820319404840 0.169510888237743 0.172055761823471 0.175267618270731 2 2 - 15672320 15672735 15672581.455 15671883 15674158 - gene protein_coding_gene FALSE TRUE AT2G37310.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE82964.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88515.1); similar to Os03g0283500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049755.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.140237509395310 -1.19909012297956 0.255953830834945 1 0.0705600629039295 3.60975807679413 -0.140237509395310 0.139091940588799
AT4G39830_at 4.37548562882937 4.41913196342032 3.90443473232583 3.59610421163325 2.68022823949922 2.82134754599873 0.869925920327794 1.85599332214602 2.62257768945202 1.47573236633415 1.86873571646739 2.38189985837181 1.59301443164849 2.22661711085057 1.83383134479298 1.97479879185262 1.64583346490429 2.01685681449692 1.86164522310983 0.236721739687071 0.239190522391338 0.226411625783571 0.232801690682563 0.218307924390405 0.230547256587916 0.218846038068676 0.218307924390405 0.22501800890716 0.225295929307185 0.223036018301190 0.224247145869938 0.218307924390405 0.218307924390405 0.224568323164397 0.218307924390405 0.223140513625107 0.226132431139330 0.228563858077696 4 4 + 18480623 18481097 18480846.636 18478923 18481337 + gene protein_coding_gene FALSE TRUE AT4G39830.1 L-ascorbate oxidase, putative similar to L-ascorbate oxidase, putative [Arabidopsis thaliana] (TAIR:AT5G21100.1); similar to putative syringolide-induced protein B13-1-1 [Oryza sativa (japonica cultivar-group)] (GB:BAD33459.1); similar to ascorbate oxidase [Lycopersicon esculentum] (GB:AAY47050.1); similar to syringolide-induced protein B13-1-1 [Glycine max] (GB:BAB86897.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.163220577862257 1.19816386068901 0.256299569812223 1 0.0695761571614261 5.03000654617513 0.163220577862257 0.180609409356387
AT3G29080_at 2.91978723836557 2.9122198798952 2.98251378778004 3.02922965071749 2.07996283097628 2.85360282264475 2.25570357890427 2.59016689433447 3.53200493457372 3.37937609443731 3.10737222616511 3.3244592303141 3.01508936693554 3.07300307609261 2.97326403770988 3.24041817012924 3.12209106787643 3.3871208122266 3.61826513091915 0.196005633331073 0.183792688138446 0.188003844442790 0.186495795646725 0.189636185370552 0.196156779199159 0.203192773267739 0.186692232451115 0.194827051643063 0.196447431466209 0.193354823946974 0.189028742199089 0.191715697483146 0.190405288296866 0.198141055962429 0.195466591101048 0.191237196227902 0.187866857591753 0.188655622822435 3 3 + 11071932 11072531 11072308.727 11070589 11072613 + gene protein_coding_gene FALSE TRUE AT3G29080.1 unknown protein -0.143835964862055 -1.19815627305096 0.256302403521976 1 0.0695680996751201 6.03551548632288 -0.143835964862055 0.146087677927984
AT3G18610_at 3.02336138344616 2.53782346749903 3.19139670502248 3.21137899740671 2.26029061738162 3.25015214146534 3.07508286177434 2.56526273269983 2.87343712512273 2.8702979739036 2.8594391730691 2.80149667512222 2.7806186545728 2.88963469296908 3.12551464715647 2.90162814889516 3.45077329713236 3.15709022454946 2.69193029028991 0.171569406115312 0.168946479912935 0.179384160588799 0.172830295324621 0.169009100286746 0.176087806144626 0.168946479912935 0.184217391370196 0.174060428366117 0.170368847980829 0.177227237353764 0.168946479912935 0.171401800023066 0.170035854331821 0.170252347582021 0.171407527869894 0.191023750358765 0.171353486043262 0.173296706662817 3 3 - 6404426 6405116 6404636.545 6404276 6407828 - gene protein_coding_gene FALSE TRUE AT3G18610.1 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding similar to nucleolin, putative [Arabidopsis thaliana] (TAIR:AT1G48920.1); similar to Os04g0620700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053909.1); similar to H0714H04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66982.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.180903990021056 1.19768946640498 0.256476786802803 1 0.069072460435609 5.79317506448131 0.180903990021056 0.210237469578515
AT1G64405_at 2.38194789116447 2.65156797516311 1.99699765413067 2.28402574801067 2.56908966967259 2.35205184919602 1.76389789271325 1.67344015586909 2.55714470594807 2.33781666836838 2.53021656767094 2.80315344691736 2.42345235048823 3.28048935266473 2.41795368452667 1.93126277582300 2.07387909127852 2.28034021742396 2.37905429687033 0.181532275377417 0.184178613182063 0.184007920067221 0.175373299773183 0.179211959363850 0.179517921820900 0.179938393078934 0.178047377053774 0.188436992289708 0.178147077521141 0.175788611129713 0.191477796553881 0.176257072604987 0.188856473440741 0.180608978420676 0.17445367701394 0.179541122845041 0.177101642679443 0.182039299028253 1 1 + 23927538 23927786 23927694.636 23927395 23927999 + gene protein_coding_gene FALSE TRUE AT1G64405.1 similar to hypothetical protein MtrDRAFT_AC142526g15v1 [Medicago truncatula] (GB:ABE94050.1) 0.112874648489296 1.19767633692176 0.256481692896842 1 0.0690585220910356 4.65526001761237 0.112874648489296 0.0793730895686458
AT3G56940_at 12.6869737951036 12.8285264183707 12.6401534728752 12.5451080357270 12.8108557084329 12.5113522075006 13.2141429739323 13.3696269500073 13.1971514779237 13.4311020681153 13.6776282000779 13.7481684241273 13.4401004743696 13.4554311420587 13.4121685119234 13.5552435878978 13.2505506530243 13.4186551490811 13.3102935647658 0.0909832032964216 0.0857143573204615 0.0898451226453505 0.0867808801355104 0.0857143573204615 0.0962451336265483 0.0899205105126094 0.0872892199044191 0.094621458334238 0.0883125267678417 0.088769029183629 0.0857143573204615 0.0875661760454183 0.0936262199837034 0.0923507080937108 0.0857143573204615 0.0914963390368098 0.0901735353301254 0.0883054565704718 3 3|0 +|/ 21088498 21089219 21088843.1 21087523 21089422 + gene protein_coding_gene FALSE TRUE AT3G56940.1 AT103 (DICARBOXYLATE DIIRON 1) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. Identical to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (Copper response defect 1 protein) (Dicarboxylate diiron protein) (AtZIP) (CRD1) [Arabidopsis Thaliana] (GB:Q9M591;GB:O04051;GB:Q38892;GB:Q8GUS3;GB:Q9M1K4); similar to Ferritin-related [Medicago truncatula] (GB:ABE79845.1); similar to putative desaturase-like protein [Trifolium repens] (GB:CAK54360.1); similar to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (GB:Q945B7); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Rubrerythrin; (InterPro:IPR003251); contains InterPro domain Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; (InterPro:IPR008434) -0.108027973667232 -1.19737041333112 0.256596028437875 1 0.0687337839874843 26.2296385976212 -0.108027973667232 0.0654294016175862
AT2G22800_at 3.85466852406726 3.69229120612856 3.26084148217368 2.91235486741214 5.7409752696431 4.30653009934730 4.42260462049146 4.16383929908033 3.4508988088304 4.50835735961067 3.42365600492963 3.41436826124462 4.75352128862616 3.83876188743684 2.4877229909038 4.61921877872751 4.13900198709229 2.83632216967049 4.45017320231783 0.260967142193930 0.253244780161682 0.253003841148465 0.256551688990922 0.259497074831265 0.273537423336242 0.252998479122528 0.260754642912455 0.261219510249056 0.259340882963646 0.257286337607819 0.263904742185476 0.251177414188586 0.251177414188586 0.286536007642503 0.251177414188586 0.255260629042969 0.275056519369059 0.254392826285662 2 2 - 9712029 9712760 9712288.636 9711786 9713230 - gene protein_coding_gene FALSE TRUE AT2G22800.1 HAT9 (homeobox-leucine zipper protein 9); DNA binding / transcription factor Encodes homeobox protein HAT9. Identical to Homeobox-leucine zipper protein HAT9 (Homeodomain-leucine zipper protein HAT9) (HD-ZIP protein 9) (HAT9) [Arabidopsis Thaliana] (GB:P46603;GB:O82763;GB:Q0WP63); similar to HAT22 (homeobox-leucine zipper protein 22), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37790.1); similar to homeobox protein (GB:AAA56908.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.212790134319284 -1.19735549451605 0.256601605212574 1 0.0687179492422706 7.95703723504225 -0.212790134319284 0.260871037694948
AT1G70620_at 7.8179784953287 7.51619468817666 7.44211732224555 7.08289950621761 8.01694229641404 7.11266777137724 7.34136655790084 6.90584256505615 7.63126253482586 8.54220200638833 8.06954008222894 8.41141091830249 7.99467940147347 7.79142720360733 7.98472188365767 8.56683956904758 7.38960210194944 7.47691447980076 8.7813739303087 0.197980616866156 0.200406505521638 0.202648189643518 0.198613120652588 0.199593852393479 0.223332996201856 0.197196989262532 0.206366194323681 0.208566548837699 0.195856201903856 0.202740050149800 0.20427703497728 0.195856201903856 0.206304055771387 0.200934041233381 0.205504856325575 0.208772755788863 0.213702445138778 0.197381709616371 1 1|0 +|/ 26633198 26633938 26633583.1 26630229 26634767 + gene protein_coding_gene FALSE TRUE AT1G70620.1|AT1G70620.2 cyclin-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Os04g0661700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054150.1); similar to H0112G12.14 [Oryza sativa (indica cultivar-group)] (GB:CAH67069.1) -0.169663194025570 -1.19731241386385 0.256617709651077 1 0.068672224512429 15.5439618730976 -0.169663194025570 0.191732108925550
AT2G24762_at 4.90015669451664 4.79067257438075 5.51996210580419 5.20562025993812 5.19412854591144 4.06018852773327 5.70783170947575 5.77760353564214 4.35862841185277 5.11235177170531 5.16750911594593 6.24061185583452 5.2329677324293 5.73936062408683 6.49620549458644 5.19531114534451 4.49830569077491 4.63474160802977 4.76820158293926 0.226058679114384 0.218906664224313 0.225903892099466 0.223732069295894 0.219399941281306 0.233871457563079 0.223006552495764 0.230091760514433 0.221114638697416 0.219869714483759 0.217882902641248 0.223117045648420 0.220840133540426 0.217882902641248 0.222421384590254 0.219582189171357 0.236366998298009 0.219928876870463 0.227202626685933 2 2 + 10566594 10566891 10566734.364 10566463 10567254 + gene protein_coding_gene FALSE TRUE AT2G24762.1 similar to GDU1 (GLUTAMINE DUMPER 1) [Arabidopsis thaliana] (TAIR:AT4G31730.1); similar to At5g57685 [Medicago truncatula] (GB:ABE81292.1) 0.177570733778091 1.19731164498704 0.256617997080407 1 0.068671408456934 10.2180307844477 0.177570733778091 0.204869654149892
AT1G17260_at 0.718624838480161 1.01230788232941 0.663589832164048 1.03287905223566 1.23099338595637 0.985408682397332 1.42306404864698 0.889256314281685 1.16406432483209 1.39260223240204 0.985409221934764 0.946651941512005 1.20694785540915 1.25526215227571 1.5580919017511 0.88336067502219 1.52472964343635 0.386831269316686 1.43882946074743 0.173336676861483 0.178166226462747 0.179349379771857 0.182443829204323 0.179123889474770 0.173818060038875 0.178481428616251 0.178779348922721 0.179018480506503 0.173094504524028 0.176315903785562 0.177374141714796 0.176960945435356 0.174439872519784 0.186932339345425 0.173094504524028 0.176383343858098 0.191439509297949 0.177533911783622 1 1|0 +|/ 5908047 5908861 5908408.667 5904051 5908891 + gene protein_coding_gene FALSE TRUE AT1G17260.1 AHA10 (AUTOINHIBITED H(+)-ATPASE ISOFORM 10); ATPase belongs to H+-APTase gene family, involved in proanthocyanidin biosynthesis, disturbs the vacuolar biogenesis and acidification process Identical to ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump 10) (AHA10) [Arabidopsis Thaliana] (GB:Q43128); similar to AHA8 (ARABIDOPSIS H(+)-ATPASE 8), ATPase [Arabidopsis thaliana] (TAIR:AT3G42640.1); similar to AHA11 (ARABIDOPSIS H(+)-ATPASE 11), ATPase [Arabidopsis thaliana] (TAIR:AT5G62670.1); similar to AHA4 (Arabidopsis H(+)-ATPase 4), ATPase [Arabidopsis thaliana] (TAIR:AT3G47950.1); similar to plasma membrane proton ATPase [Nicotiana plumba (GB:AAD46188.1); similar to P-type ATPase [Petunia x hybrida] (GB:ABC59935.1); similar to plasma membrane H+-ATPase [Oryza sativa (japonica cultivar-group)] (GB:CAD29315.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.135508478078908 -1.19689434268985 0.256774034929883 1 0.0682285581415958 2.20713679884950 -0.135508478078908 0.130410991209588
AT2G33160_at 1.88091795225684 1.87409921899086 1.76294893977006 1.52988322436326 1.47168563438477 1.77268286145229 1.81026011623568 1.82837371240915 2.16498494829259 2.08123295211616 1.98581298694968 2.08441096621416 2.10852548447909 1.80385452492608 1.76588953117442 1.86262879002715 2.18705071336888 1.97149620802461 1.67378189103505 0.192498662816832 0.191464127793642 0.190320436174698 0.194643143379465 0.193630098230938 0.197214438153661 0.195093929011719 0.190709799554832 0.195187251603534 0.191310786662827 0.187905693289868 0.195678987442992 0.190650970601126 0.187952188160203 0.187905693289868 0.187905693289868 0.202029498700375 0.190379251694326 0.196833762024791 2 2 + 14062725 14063260 14063015.364 14060481 14063323 + gene protein_coding_gene FALSE TRUE AT2G33160.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G78400.1); similar to Exopolygalacturonase precursor (Pollen allergen Pla a 2) (GB:Q6H9K0); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Viral protein, DNA-binding; (InterPro:IPR009021); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.108118599074816 -1.19647888314749 0.256929458454304 1 0.0677877781775821 3.71362741471291 -0.108118599074816 0.0659639242616796
AT1G02830_at 1.62587502388835 1.74361707149542 1.77844905523521 1.59818746812529 1.20651768667847 1.85638431630056 1.62463255813421 1.7218101477315 2.00866221767635 1.95469523088564 1.63970207481557 1.94247682533990 1.87315383611059 1.92678758435972 1.47846037067419 1.69704887794727 1.75131893823682 2.27050149316393 2.07731361691734 0.184796076136343 0.184756710837489 0.183459493733793 0.189300542185266 0.18619124908803 0.187183128633920 0.193615678974797 0.184596146209024 0.185447842246527 0.185043808329270 0.188185462276248 0.183620871092633 0.202143881114302 0.199075237508729 0.188388784817448 0.189188900014205 0.190051687676902 0.188532261114048 0.195111205597007 1 1|0 -|/ 625180 625571 625397.6 625145 625608 - gene protein_coding_gene FALSE TRUE AT1G02830.1 60S ribosomal protein L22 (RPL22A) Identical to Putative 60S ribosomal protein L22-1 (RPL22A) [Arabidopsis Thaliana] (GB:Q9SRX7); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicago truncatula] (GB:ABE84977.1); contains InterPro domain Ribosomal L22e protein; (InterPro:IPR002671) -0.130112420236464 -1.19626928512092 0.257007897429877 1 0.0675654495523031 3.56242830190235 -0.130112420236464 0.119661706559790
AT1G44920_at 9.27254890233174 9.38640776052622 8.95114453782436 9.02304866952323 9.18039781585005 8.76932763711141 9.68807579669298 9.71726500816198 9.31990733287262 9.19628075661197 9.71796153501394 9.65383342466871 9.26903438650793 9.45476501805001 9.79390017137697 9.38227113381325 9.31843110209728 9.3521947888673 9.02374058991695 0.117452986017067 0.120161141430788 0.120856201515517 0.119407960136067 0.116391987847632 0.122406908369901 0.120644259991244 0.122237766270992 0.126288928572171 0.121830925363970 0.119693376986995 0.116187583444243 0.120612187890140 0.121235436144220 0.123991113644700 0.121976303228922 0.122435722281053 0.122733884998004 0.116578096563860 1 1|0 -|/ 16985880 16986573 16986255.375 16985344 16986859 - gene protein_coding_gene FALSE TRUE AT1G44920.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38479.1) -0.111135991634358 -1.19594978472311 0.257127502270144 1 0.0672265993962241 18.5849146017610 -0.111135991634358 0.075027678487812
AT2G19720_at 3.38986267342318 3.63285520045065 3.76057626038086 3.83458425112575 3.67834604646327 3.75366398506138 4.82561869412317 4.45812144402455 3.84390330343584 4.25835027194098 3.82526285812575 4.13314469641116 4.05449127429942 3.72603215932739 4.53792526698956 4.23892005861224 3.85972476007196 4.12443948790239 3.79974154822927 0.195026933654109 0.190292131062456 0.192783260372000 0.194185106531784 0.201719323374187 0.191917428392137 0.197527905110086 0.189097994520793 0.205343035856432 0.188779539237842 0.202621977039608 0.190049584353391 0.191400470501850 0.204532877627188 0.204023859703611 0.190783986786436 0.193314507617181 0.190335122098315 0.192028179159053 2 2|0 -|/ 8517308 8518244 8517626.6 8517102 8518421 - gene protein_coding_gene FALSE TRUE AT2G19720.1 RPS15AB (ribosomal protein S15A B); structural constituent of ribosome Identical to 40S ribosomal protein S15a-2 (RPS15AB) [Arabidopsis Thaliana] (GB:O82205); similar to RPS15AE (ribosomal protein S15A E), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G29430.1); similar to 40S ribosomal protein S15a (GB:Q9AT34); similar to Os02g0255200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046462.1); similar to Os02g0478600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046846.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) -0.112330502449390 -1.19570158684148 0.257220445487195 1 0.0669634167935707 7.93161570842469 -0.112330502449390 0.078401511884954
AT3G30660_at 0.835928757550618 0.346821727195386 0.922609308918613 0.803027221758887 1.20009938013252 1.54743626801656 1.10955920147678 0.863202136696417 1.13113803762878 0.688144321574018 1.07238499571684 1.20272449623612 0.387082677104252 0.434484442054109 0.248581690894084 0.816813241745411 0.727595977831403 0.62566804697526 0.473171454435291 0.291019928825517 0.291359629438875 0.298594670584958 0.292655987820082 0.302633597851935 0.298636884592019 0.305025069214233 0.283952787706472 0.283952787706472 0.334871635637069 0.283952787706472 0.283952787706472 0.301020370208949 0.288440374352531 0.299285914436465 0.284682318350421 0.294275584722677 0.289264353219395 0.305794123242535 3 3 + 12209664 12209739 12209699 12209587 12209820 + gene protein_coding_gene FALSE TRUE AT3G30660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G31753.1) 0.127340381916916 1.19509046458526 0.257449407297572 1 0.0663155729707435 1.68036960885941 0.127340381916916 0.114119058092995
AT4G15810_at 3.41850493306467 3.60535912288769 3.69496823504479 4.40627823878063 3.96043612970551 4.00136929103068 4.2854931334171 4.60996704320126 3.00113930371953 3.30964157562096 3.12764015096287 3.0758194255572 3.86353976539523 3.073579760455 3.08736359315318 3.91385925152026 3.60523478619498 3.50465198127259 3.17744411889472 0.210970991917289 0.211691321739269 0.211474742213836 0.217713671798713 0.216124520810654 0.223037300740633 0.212516826649262 0.212980637755901 0.229781506812074 0.220697519303781 0.220212359257756 0.217153169126370 0.211792849796296 0.218757308338049 0.212909461812912 0.215397615575031 0.226133292003146 0.229816416403427 0.218701534832032 4 4 - 8989221 8991328 8990813.75 8989175 8992604 - gene protein_coding_gene FALSE TRUE AT4G15810.1 chloroplast outer membrane protein, putative similar to TOC159 (translocon outer membrane complex 159) [Arabidopsis thaliana] (TAIR:AT4G02510.1); similar to putative chloroplast outer envelope 86-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44144.1); similar to Os05g0151400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054673.1); contains InterPro domain AIG1; (InterPro:IPR006703) 0.139825669366618 1.19469010503518 0.257599492718305 1 0.0658912908308628 7.2823983935877 0.139825669366618 0.139288607307006
AT3G55670_at 1.21734894344414 1.41874672255686 1.72406436732086 1.58712919591201 1.15341592474316 1.54011612422198 1.03886115581369 1.63617364924463 1.86876284658535 1.44496564145774 1.52536572227774 1.37871030476706 1.93257589360778 1.73554279653023 1.67748346128662 1.55413407921711 1.77611182742921 1.68686941943284 1.37074876755108 0.199034249571710 0.186302068200836 0.189240786319147 0.185179574464642 0.188050425514413 0.188023273066065 0.195937605520163 0.183507201702136 0.182951339083575 0.195361252313252 0.189343874779394 0.183169172789014 0.183413098758258 0.18812151684129 0.182951339083575 0.186641829150489 0.195448887037875 0.186592920677955 0.197218695413543 3 0|3 /|- 20669025 20669629 20669202.5 20668992 20670482 - gene protein_coding_gene FALSE TRUE AT3G55670.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain FBD; (InterPro:IPR013596) 0.135127777410929 1.19468936110124 0.257599771666228 1 0.0658905025439556 3.02440281370715 0.135127777410929 0.130151784441087
AT3G04230_at 3.9875991687625 3.91615675532049 3.81377781675565 3.557728930893 3.57369521012713 3.92537505981604 2.84263385392891 3.78880986447711 2.78693658788299 3.42094614732555 3.30375570530334 3.50197575908239 3.46375293335314 3.66206844142176 3.70157035355624 3.60179427446741 3.0537909480208 3.13982678536943 3.35283984324329 0.196150056829536 0.196516743932296 0.198024430897411 0.195968948295862 0.196268093115927 0.203114359942300 0.195507026898204 0.191621757736461 0.200658442699082 0.191621757736461 0.197270063438545 0.197680818448857 0.19844770375929 0.191621757736461 0.193923128904417 0.193476946152565 0.207947794853243 0.215228272873585 0.198016446557088 3 3 - 1113185 1113587 1113405.545 1112997 1113666 - gene protein_coding_gene FALSE TRUE AT3G04230.1 40S ribosomal protein S16 (RPS16B) Identical to 40S ribosomal protein S16-2 (RPS16B) [Arabidopsis Thaliana] (GB:Q9M8X9); similar to 40S ribosomal protein S16 (RPS16C) [Arabidopsis thaliana] (TAIR:AT5G18380.1); similar to 40S ribosomal protein S16 (GB:O22647); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754) 0.162751858848457 1.19458969557975 0.257637144742762 1 0.0657848983390756 6.98345929562131 0.162751858848457 0.180640622991066
AT3G16880_at 1.44951078304082 1.22222839540200 1.27017973691659 1.57417980538206 1.07741936521656 1.37163188905545 1.15849990806263 1.07282767093434 1.54818098886808 1.2742145123921 1.46553470524738 1.48453356084426 1.36320939622368 1.21810315155493 1.43318243687621 1.11860754521200 1.45815937506256 1.50104678920337 0.924312394016742 0.181770674274222 0.182551244426580 0.180035742000946 0.190245121218138 0.184042650292216 0.189613554398533 0.181205807883396 0.185246057335217 0.19563053133935 0.192762268448411 0.190952259468738 0.182904404777878 0.180863212968012 0.188560159485176 0.186680389123421 0.184438718804977 0.188758075743030 0.197286105978513 0.198491950787322 3 3 + 5767282 5767765 5767495.818 5766739 5767836 + gene protein_coding_gene FALSE TRUE AT3G16880.1 F-box protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G16740.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABD33336.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.114490249025895 1.19455385208231 0.257650586567176 1 0.0657469206800863 2.58915957014482 0.114490249025895 0.0844205396810367
AT1G72420_at 4.4889800482537 4.57694024065673 4.22030883947452 3.98782424124766 4.4018694429283 4.05461579225894 3.41114934774541 2.95081691622727 4.32447749748449 3.98297402077525 4.10341503386883 4.14130364767024 3.3597002825919 3.95225244611466 4.09118514416450 3.41850035826309 2.92605773719032 3.19923361047477 4.31515405164441 0.248096033802109 0.240357242929347 0.245277554574928 0.251310462002326 0.238666927100877 0.257458042744394 0.238666927100877 0.239727823456306 0.248161269534241 0.239912683531142 0.241380468437643 0.241581024971076 0.252597062921531 0.246995146586138 0.242658810077880 0.240230561118438 0.249558052183913 0.243621921703743 0.24625562608179 1 1|0 -|/ 27265064 27266465 27265589.444 27264859 27267328 - gene protein_coding_gene FALSE TRUE AT1G72420.1 similar to auxin-induced-related / indole-3-acetic acid induced-related [Arabidopsis thaliana] (TAIR:AT1G17350.1); similar to PREDICTED: similar to CG7598-PA [Tribolium castaneum] (GB:XP_975544.1); similar to Os01g0727400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044122.1); contains domain SUBFAMILY NOT NAMED (PTHR13194:SF2); contains domain FAMILY NOT NAMED (PTHR13194) -0.124698108334592 -1.19402213047030 0.257850055038327 1 0.0651836400712149 7.93980871985423 -0.124698108334592 0.108663602972556
AT2G37890_at 1.76720210985781 2.17342704168035 1.96702741868948 2.25379634367280 1.70811156456971 1.40760629656504 1.69321559080921 2.28802301021624 1.80929059006065 1.75424484358128 1.43213471248241 2.20838996967725 1.77233885536437 1.56551090062716 2.11186872273502 1.83968567673627 1.89906064667624 1.62921279057163 2.27194755579039 0.224323141582189 0.232483517441541 0.247818045895600 0.23137341774944 0.233788082879887 0.238041745915221 0.226423494718967 0.227307364288847 0.234410227596428 0.238114193890334 0.225718584642014 0.22946634356045 0.225118679058296 0.225850680312568 0.229399561240401 0.229933215180961 0.238830019093501 0.241144529347209 0.237818379190762 2 2|0 -|/ 15869102 15870023 15869500.889 15868766 15871087 - gene protein_coding_gene FALSE TRUE AT2G37890.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT3G53940.1); similar to Os03g0267700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049667.1); similar to putative peroxisomal Ca-dependent solute carrier protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06887.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.142108622192645 -1.19350338516637 0.258044773472027 1 0.0646342870957415 3.78351931242570 -0.142108622192645 0.143891013528187
AT4G20900_at 0.976414009075115 0.61765648953538 0.880897039430564 0.653188111613128 0.70111259500514 0.576160804469308 0.373426624921906 0.686757445878518 0.781878546081712 0.732401376275507 0.897537170729789 0.568773996359757 1.12790015224321 0.996860395725708 1.10974288998960 0.818073105570198 0.940301051788587 0.623806481529106 0.550778563981346 0.213112384739892 0.215872267487299 0.213198386852605 0.21221609288544 0.209084640226847 0.221234336886431 0.211020223587312 0.210458790144999 0.208837830646833 0.225973768338865 0.211419316023220 0.207847199048023 0.217014060916921 0.216756887874892 0.216033178631366 0.21199930960123 0.211252978421293 0.217634268292641 0.209518739428757 4 4 - 11184328 11184617 11184462.818 11184114 11185855 - gene protein_coding_gene FALSE TRUE AT4G20900.1 MS5 (MALE-STERILE 5); binding ms5 mutants are male sterile, pollen tetrads undergo an extra round of division after meiosis II without chromosome replication, resulting in chromosome abnormalities. Gene product has some similarity to SCP1, a rat synaptonemal complex protein. similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G44330.1); similar to tetratricopeptide repeat, putative [Medicago truncatula] (GB:ABE88165.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.118148785994639 1.19308113148089 0.258203358361512 1 0.064187251193897 1.47006525712689 0.118148785994639 0.093888728883549
AT2G03280_at 3.75222395611185 3.24254108099662 3.18467042330553 2.98523385174037 3.16940787804315 3.08954250622316 2.99815102602476 3.04362291405725 4.09669571770936 3.55131493120596 4.39918468503584 4.10519870079845 3.21078147843778 3.80640322138562 4.0375573314126 3.75810949458974 2.59962657684114 3.65671532544123 3.70059880099659 0.182776294793142 0.181065699129943 0.177347968885154 0.186688684989722 0.182337622014951 0.178904510122860 0.184732697968022 0.183702770063928 0.182142514155680 0.187176516848656 0.184815776501178 0.178326040057597 0.177706760246668 0.181535318650665 0.183832007746421 0.188906689414847 0.189373153225322 0.196091255011781 0.188148755051376 2 2|0 -|/ 996264 996888 996512.8 996085 998292 - gene protein_coding_gene FALSE TRUE AT2G03280.1|AT2G03280.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14020.1); similar to Os03g0169000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049097.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96844.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.119046897182036 -1.19304394480822 0.258217328175203 1 0.0641478877052937 6.92295766375289 -0.119046897182036 0.0960410898259952
AT3G12680_at 5.49559626461473 5.71727998222051 5.71505757725943 5.71569677421543 6.0244041706306 6.27637970113963 5.10394054507748 5.56863765710173 5.83559279790695 5.35271418155158 5.43049583332286 5.26114179459217 5.3486671278382 5.53217708379241 5.54407748440466 5.5532573180882 5.28526448729419 5.78928700989953 5.87810547575273 0.222112563772266 0.216742428207194 0.221557158306174 0.213148181620011 0.220998363138582 0.228283611235855 0.211883522806409 0.220720193533050 0.225575570645994 0.215243496247767 0.222623971531874 0.216602389294374 0.211883522806409 0.213794950529741 0.215470470747192 0.214372617210501 0.220712914191429 0.216046324148221 0.216731954590025 3 3|0 -|/ 4025312 4026499 4025805.5 4025083 4029147 - gene protein_coding_gene FALSE TRUE AT3G12680.1 HUA1 (ENHANCER OF AG-4 1) Member of the floral homeotic AGAMOUS pathway. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G47850.3); similar to Unknown (protein for MGC:30371) [Mus musculus] (GB:AAH19429.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.120381404612297 1.19292091805427 0.258263549558209 1 0.0640176658261953 11.280549168603 0.120381404612297 0.099198090183931
AT4G22670_at 8.97381650388703 9.17619461741528 8.77503538394649 8.76123630340605 8.45588183506828 8.14019960513594 8.16462448414677 7.98096643415688 8.66568673987168 8.16689453604617 8.05039772670065 8.28086449062811 8.09573038302729 8.12844147141438 8.23942963297163 8.1436116069257 8.27931318224638 8.31912494187221 8.28055879759915 0.124349677998146 0.114516638660763 0.116043310273594 0.118934422220886 0.119148675344092 0.114149465797001 0.128053643947931 0.118357126031934 0.125033654256616 0.120829344339767 0.116486898542962 0.116437222352139 0.115853629682804 0.122581410460040 0.119084290540105 0.117249417727637 0.126233239302072 0.124021407363847 0.125929371527301 4 4|0 +|/ 11919830 11920616 11920273.1 11918091 11920921 + gene protein_coding_gene FALSE TRUE AT4G22670.1 tetratricopeptide repeat (TPR)-containing protein Identical to FAM10 family protein At4g22670 [Arabidopsis Thaliana] (GB:Q93YR3;GB:O49648); similar to ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G17880.1); similar to Os02g0100300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045581.1); similar to ABI3-interacting protein 1; CnAIP1 [Chamaecyparis nootkatensis] (GB:AAP31311.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) -0.109872369855671 -1.19260698695181 0.258381523750023 1 0.0636854203432603 16.8350748312182 -0.109872369855671 0.0722972731091229
AT1G20150_at 2.23334228270592 2.18368599069152 2.36250904059876 2.31038541135553 1.76353677611869 2.65165545046320 1.70321645071056 2.27396806306778 2.44103853013441 2.38658693254756 2.34735986099947 2.47369845985883 2.43619908175028 2.57536934775482 2.47067358275508 2.25725237216964 2.29201092711692 2.62210786904962 2.01230030835406 0.208790506586675 0.209327463068921 0.210875212532510 0.213663980515245 0.223132468393347 0.211682774792825 0.2293727385614 0.208185561920259 0.216035643918250 0.217665930338398 0.212407737881360 0.216652776767909 0.209414163330640 0.206827704095033 0.217246663692252 0.209323275354677 0.221294125341160 0.218214947825782 0.220109937128619 1 1 - 6987348 6987884 6987669.364 6987323 6990352 - gene protein_coding_gene FALSE TRUE AT1G20150.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20160.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAG38994.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.163913576754961 1.19251817585601 0.258414906385155 1 0.0635914400116652 4.54244203056092 0.163913576754961 0.183118886644857
AT4G20050_at 2.08157719665296 2.25476011231831 2.52342228584295 2.38813034253203 1.68771222075710 1.95043699764111 1.86868436550783 1.94075802366585 2.52632294654845 2.20235812308282 2.10765422166813 2.15328098489086 1.70473109920706 2.11278103789553 1.96936465512270 2.14722269200707 2.29807594218002 2.75754423373744 2.67957913589793 0.207995205855229 0.207407290975443 0.217177974669449 0.213381236332197 0.214635267801031 0.207816026536456 0.206756431656404 0.214390925207901 0.212870424844006 0.209234233040978 0.203351467600776 0.203351467600776 0.212957389429444 0.203385841583885 0.215949074841295 0.205895271413348 0.209990733833493 0.209116613959635 0.214250199805648 4 4 - 10849951 10850490 10850199.455 10849792 10853356 - gene protein_coding_gene FALSE TRUE AT4G20050.1|AT4G20050.2 QRT3 (QUARTET 3) Encodes a polygalacturonase that plays a direct role in degrading the pollen mother cell wall during microspore development. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20040.1); similar to Os04g0613200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053852.1); similar to OSJNBa0070C17.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE05209.2); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.106053836507038 -1.19207678961043 0.258580866895793 1 0.0631244408349245 4.39981115653893 -0.106053836507038 0.0605728783056053
AT1G51320_at 1.08138129550707 0.71830863419464 0.9211951039657 1.08175622252403 1.12077043434960 1.31328165203003 1.14525096073217 1.05952958389846 1.69199140555331 1.18926614526396 1.33315243214795 1.32561531387080 1.72357597526323 1.37361980944222 1.53612550822030 1.55255212218827 1.44427253705634 1.52954110883615 1.20466276071138 0.166944342602402 0.169469111036225 0.168907558444173 0.169025260671077 0.172133173666134 0.177094452101189 0.177397536755340 0.165040413380712 0.177212385942983 0.175310580127676 0.166227014544667 0.165040413380712 0.174287681390536 0.173152933164312 0.170991591585683 0.165040413380712 0.165040413380712 0.168378334561952 0.170469024069357 1 1 + 19029843 19030346 19030092.545 19029310 19030437 + gene protein_coding_gene FALSE TRUE AT1G51320.1 F-box family protein (FBX11) similar to F-box family protein (FBX10) [Arabidopsis thaliana] (TAIR:AT1G51290.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.111733324168100 1.19175504952908 0.258701893797618 1 0.0627841124276116 2.4748243799274 0.111733324168100 0.077780391065785
AT2G13760_at 2.54173925782058 1.87414524917216 2.13649876383602 3.01737288821640 2.17093240568234 2.7394339991736 1.96603978241853 2.01934427772052 2.96576807725011 2.74155145643853 2.55302264529340 2.57780513374345 2.38993765066448 2.60838138210647 2.55068661215462 2.73581657071518 3.04166876466897 3.36113210191243 2.62324612313222 0.331756754017202 0.331756754017202 0.331756754017202 0.331756754017202 0.352856466315501 0.331756754017202 0.331756754017202 0.339028664487835 0.3862345828205 0.331756754017202 0.331756754017202 0.331756754017202 0.331756754017202 0.333115094407110 0.363965046868338 0.331756754017202 0.374159106896064 0.331756754017202 0.333593950650445 2 0|2 /|- 5742192 5742465 5742328.5 5742037 5742726 - gene protein_coding_gene FALSE TRUE AT2G13760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24380.1); similar to conserved hypothetical protein [Asparagus officinalis] (GB:ABB55300.1) 0.183096755580616 1.19174639146762 0.258705151264412 1 0.062774955104641 5.06026911630385 0.183096755580616 0.215288377130102
AT3G49630_at 1.55989939941043 1.45255765596102 1.49668281045202 1.64653016221869 1.28605728903693 1.40270437486041 1.22087315742744 0.578146235899244 0.806104048692809 1.27036697869815 1.15629788673361 1.00764865864075 0.994179933891177 1.24748802366127 0.79781382453248 0.932039397420049 1.64790242071669 1.06467134807756 1.23556107626705 0.203974860371554 0.219165571978434 0.212515399640851 0.2136435373262 0.209585971641538 0.207156647694966 0.216954799160694 0.211141149177592 0.210900154720822 0.213233894749455 0.209842343197068 0.208801106580721 0.205332739740771 0.209607329063145 0.213435110939643 0.211220871750365 0.232237021160021 0.210676544059796 0.214514543783329 3 3|0 +|/ 18410153 18411198 18410924.429 18408744 18411240 + gene protein_coding_gene FALSE TRUE AT3G49630.1 2-oxoacid-dependent oxidase, putative similar to DIN11 (DARK INDUCIBLE 11), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49620.1); similar to putative flavonol synthase-like protein [Euphorbia esula] (GB:AAF34802.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.128559516228671 1.19170568287674 0.258720467701149 1 0.0627318997483634 2.43543932962254 0.128559516228671 0.117458221135999
AT4G35360_at 8.41266322062692 8.35992898302061 8.34292491191721 8.40850837181079 8.97454068924902 8.50711968283224 8.58578070981356 8.73606582647542 7.91038077915746 7.62168328944745 8.0564202621997 7.68602639121441 7.71876914922564 8.49514832556711 8.02504683912715 7.9314469144249 7.39706717923843 7.73772637849513 7.52534562375933 0.16226637645285 0.162024153056289 0.165841782259064 0.163985563880597 0.161425974619155 0.16998545173656 0.166207404124536 0.162076758008203 0.173469640253995 0.174210779919035 0.164971248763119 0.169081103110775 0.163547675847769 0.162841925607635 0.169888522296529 0.161620788816999 0.185162191848102 0.165799480669290 0.166004785518126 4 4|0 -|/ 16812657 16813452 16813121.75 16812121 16814750 - gene protein_coding_gene FALSE TRUE AT4G35360.1 pantothenate kinase family protein similar to pantothenate kinase-related [Arabidopsis thaliana] (TAIR:AT2G17340.1); similar to Os06g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057524.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52501.1); contains InterPro domain Protein of unknown function DUF89; (InterPro:IPR002791) 0.114908464058332 1.19167276523294 0.258732853351487 1 0.0626970852780236 16.3243213798305 0.114908464058332 0.0862066042838831
AT2G26780_at 7.8781121200768 7.64681896458444 8.15011397495106 7.94355532184094 8.43220088210695 7.72611580339646 7.9006192418353 7.44639679953022 7.41519888841943 7.37890062344554 7.49930910141716 7.62244678917579 7.17378171314193 7.68816732303472 6.92088292721064 7.61961464038059 7.61982432885044 6.99096907831964 7.53041144367192 0.177402135293021 0.17245564273395 0.179032656488686 0.1749161324684 0.181720181468023 0.172604332396674 0.187221232114195 0.183057839482217 0.181821956276694 0.175838803636682 0.170319625517098 0.174536187504252 0.179724333126835 0.16931307955302 0.195405810180450 0.173819104462232 0.186498304780872 0.190447253906167 0.179274879244070 2 2|0 +|/ 11429127 11430641 11430015.8 11417154 11430850 + gene protein_coding_gene FALSE TRUE AT2G26780.1 binding similar to HEAT repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95739.2); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52718.1); similar to HEAT repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91356.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.147690274956447 1.19070946601177 0.259095513839238 1 0.0616785971014179 15.3071807083088 0.147690274956447 0.154885100338777
AT2G39795_at 4.46300558341319 5.21958616675957 4.63757562372245 4.66204323765998 5.374765942445 3.83978112355982 5.24046114089839 4.75276173848513 3.11996718363078 3.96330748213796 3.68587117213725 3.39267729755821 3.52829359894578 3.24794711311146 3.34139285878069 4.15276886512367 3.47532498431657 3.01448686170937 3.9392125140894 0.237523061386852 0.235816670692889 0.233952069495794 0.239465398151833 0.23453822301342 0.251121212191345 0.241855821196724 0.232981056987846 0.252677259269212 0.232272378803202 0.235274928675887 0.233786088713693 0.236170060526404 0.229610142038780 0.240928019812164 0.235403599625791 0.248478307099841 0.235038829121250 0.240426573682896 2 2 + 16604280 16605021 16604634.818 16604065 16605240 + gene protein_coding_gene FALSE TRUE AT2G39795.1 mitochondrial glycoprotein family protein / MAM33 family protein Identical to Uncharacterized protein At2g39795, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q8W487); similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT3G55605.1); similar to Os01g0143300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041996.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16469.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) -0.242364612433964 -1.19069054576536 0.25910264091184 1 0.0616585990747569 8.35075143824115 -0.242364612433964 0.307971278263486
AT3G22530_at 7.98779571052833 8.48473819982189 8.64569771382627 8.6883829179475 8.78525075454494 8.38885797699932 9.23717785937671 9.16000100066444 8.17003736517504 8.51614316819024 7.95463376483768 8.27554005325043 8.3670730390889 8.12351317065104 8.12381073284975 8.70015254261438 8.25247179041164 7.86758953997106 8.41955200050298 0.177073168185021 0.169385981692805 0.172438442564907 0.172244422706982 0.173748517623444 0.175651141111439 0.182485576025500 0.172611399930433 0.191894004946790 0.179034673422286 0.182084469213846 0.176537907571504 0.172035935221656 0.185561047313973 0.177741530319482 0.170888002649813 0.183985330622184 0.176655306186730 0.179850762154218 3 3 - 7977859 7978331 7978074.818 7977611 7978642 - gene protein_coding_gene FALSE TRUE AT3G22530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14830.1); similar to HSP20-like chaperone [Medicago truncatula] (GB:ABE82966.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) -0.125430141924197 -1.19051502164413 0.259168766533546 1 0.0614730877023971 16.9605755619631 -0.125430141924197 0.111059759018917
AT1G25290_at 3.95290049059764 4.04966847433655 3.53765034649876 3.41449361639053 4.29962682987218 4.02505842719849 4.21870980672216 4.06546951338696 4.67055452479854 4.6087394926777 4.82256557367592 4.83622689691407 4.15667166537442 5.15859442792819 4.63041433181292 4.61283801572699 4.26546813979599 4.66406544687583 4.52915254622650 0.171199815230444 0.173461956906221 0.179195261695330 0.182788097926307 0.172928504662557 0.17751020213521 0.179052627439422 0.172040259307572 0.183461679369187 0.174920197989422 0.172012633864607 0.172063034201271 0.173336100656585 0.174690605704098 0.170060687864347 0.168431565534375 0.176787325278048 0.168431565534375 0.168431565534375 1 1|0 +|/ 8867866 8868887 8868416.222 8867095 8869079 + gene protein_coding_gene FALSE TRUE AT1G25290.1 rhomboid family protein similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT1G52580.1); similar to Rhomboid-like protein [Medicago truncatula] (GB:ABE84238.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -0.105969862621022 -1.19039890029894 0.259212520543020 1 0.06135037038591 8.56853272987405 -0.105969862621022 0.060791721101151
AT1G15230_at 5.40085098239854 5.16192727977992 5.1241665857998 4.90116950277985 5.57791683438973 5.3822290778213 5.67368198158673 5.41158538030551 5.19142649668927 4.90555393260808 5.0758952458409 5.06226089941196 4.89512900775981 4.93020697731625 5.01991267280207 5.01527294714775 4.92392652431689 5.01617332360037 5.05761755835679 0.212738035881891 0.209485615110785 0.216448529228407 0.21427094025433 0.219770659778844 0.219283873933792 0.214857662072596 0.210227748044053 0.224882864789911 0.211629342836130 0.208250470253662 0.217913499858670 0.219108900588661 0.218488234552562 0.213836043279645 0.212307493355113 0.220812651477754 0.224223730251103 0.20797976485491 1 1 - 5242830 5243102 5242979.182 5242193 5243222 - gene protein_coding_gene FALSE TRUE AT1G15230.1 similar to Os09g0344700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062932.1) -0.112413184298442 -1.19025066511378 0.259268383396396 1 0.0611937281467189 10.3511308842706 -0.112413184298442 0.0800180066583502
AT1G63930_at 2.85923486162079 2.15574125216206 2.95930986026881 2.09211380521751 2.42759106061887 2.38371608843676 2.42670004032464 2.71263271461821 3.11008961154053 2.78519596517134 2.94248514862321 2.44440641335952 2.67006535815429 2.43879049656051 2.57254275717031 2.39764552956219 2.70910174653769 3.03783899932742 2.88073265930354 0.207071462961571 0.206760742041263 0.224723810299251 0.210233674523588 0.211651865575646 0.214480927366845 0.206002531283441 0.204600597788092 0.214825267025180 0.207657041428317 0.209881430829644 0.217303535996357 0.225036525234268 0.211666785620359 0.214772874909181 0.208621687607276 0.216776437505001 0.223135455321232 0.217463818510349 1 1 + 23732255 23732813 23732513.364 23731554 23732996 + gene protein_coding_gene FALSE TRUE AT1G63930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23530.1); similar to Protein of unknown function DUF793 [Medicago truncatula] (GB:ABE83157.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) -0.17331218469459 -1.18989218855577 0.259403515674861 1 0.060814981392053 5.29060444449197 -0.17331218469459 0.1996224938815
AT4G29810_at 10.1340741357161 10.3245017642667 10.3618979441940 10.1210963247063 9.59071566762491 9.55539249642973 9.41008661465884 9.48196861887452 9.85167740392708 8.87567572981642 8.98337045089152 9.29682875147606 8.96068230870235 9.06192030786171 8.78308643150642 8.724339407577 8.24747533130587 9.43266178961394 8.91579486073104 0.134628883163237 0.134652110823964 0.139385838268298 0.141391207283216 0.135653222578241 0.133622286168732 0.134627446095527 0.138586609070627 0.139219235794939 0.146959177063327 0.138201382580228 0.133299758882113 0.138270905031512 0.137067270543756 0.140474161223290 0.14226015201318 0.159765095846105 0.137987724242910 0.142654032902995 4 4|0 -|/ 14593311 14594075 14593609.9 14593045 14595298 - gene protein_coding_gene FALSE TRUE AT4G29810.1|AT4G29810.2 ATMKK2 (MAP KINASE KINASE 2); MAP kinase kinase/ kinase encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2. Identical to Mitogen-activated protein kinase kinase 2 (EC 2.7.12.2) (MAP kinase kinase 2) (AtMKK2) (AtMAP2Kbeta) (MKK2) [Arabidopsis Thaliana] (GB:Q9S7U9;GB:O80395); similar to MEK1 (mitogen-activated protein kinase kinase 1), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26070.3); similar to double MYC-tagged mitogen activated protein kinase kinase 2 [synthetic construct] (GB:ABF55662.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to MEK1 (mitogen-activated protein kinase kinase 1), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26070.3); similar to double MYC-tagged mitogen activated protein kinase kinase 2 [synthetic construct] (GB:ABF55662.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.104234621299156 -1.18985070536064 0.259419156886384 1 0.0607711580447944 18.9478058269047 -0.104234621299156 0.0549057616439049
AT3G03330_at 8.35766726019183 8.31492933710084 8.03767445847827 8.07451329123411 8.618105321972 8.2505408014715 8.09002994409192 8.09648062667832 7.77077802276385 8.09054167974693 8.00629083338696 8.17508589526208 8.00516205335148 7.86713767556457 6.91078056653456 7.7840732387745 7.76119934231603 7.44077186815766 8.10323156515338 0.236659542976203 0.242165729600888 0.249539484251034 0.247637321912307 0.234000170676985 0.246894439626141 0.240651431926592 0.246076832508525 0.288132766843045 0.234000170676985 0.234000170676985 0.234000170676985 0.234000170676985 0.249531862712111 0.261408665133770 0.234000170676985 0.268224433468726 0.277317139839879 0.243141038720579 3 3|0 -|/ 783599 784587 784061 783339 786216 - gene protein_coding_gene FALSE TRUE AT3G03330.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03350.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE78015.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.106969697723164 -1.18936189131651 0.259603520087425 1 0.0602548554332737 16.0959908501806 -0.106969697723164 0.0643635215012005
AT1G71750_at 4.72077801085188 4.6740771902908 4.87593416950032 4.8158271890304 5.14487095487086 4.67629422786811 4.92810842427766 4.63325327360373 3.72746704582517 3.92969826927736 3.78135106715161 3.71652050118303 3.83929562441039 4.04994844036804 4.12367778337738 3.89987317009748 3.93405614585421 3.90300033891071 3.76494431590863 0.207306434497251 0.201313479278071 0.196451839202705 0.20230721357371 0.188399089840775 0.197327908455276 0.189902629334003 0.192197185862716 0.191379945282014 0.188993432791134 0.190401280798829 0.195257939804323 0.204516714439181 0.190896955309790 0.193344236643303 0.190568149933739 0.192827754357599 0.188105726916366 0.195934154889728 1 1|0 -|/ 26991641 26992732 26992334.8 26991438 26992822 - gene protein_coding_gene FALSE TRUE AT1G71750.1 phosphoribosyltransferase family protein similar to Hypoxanthine phosphoribosyl transferase [Desulfotomaculum reducens MI-1] (GB:ZP_01148584.1); contains InterPro domain Hypoxanthine phosphoribosyl transferase; (InterPro:IPR005904); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) 0.118886458738396 1.18861400060547 0.259885798277884 1 0.0594652154269278 8.66531056049813 0.118886458738396 0.0967091528513024
AT1G09540_at 0.757885936063157 1.16311733485007 1.06942132795006 0.917728800094264 0.463986696866491 0.760784594060105 1.14863069279875 1.31911083607467 1.09945786996738 0.802304161227447 1.21038938423228 1.59610156092968 1.34161418181746 1.64907186217515 0.802550024495032 0.603802482528861 1.19450950065102 1.42824428264316 1.61055056681231 0.255185399116909 0.240531437150500 0.257241066875909 0.232933909493629 0.238836719220346 0.241478460394096 0.244713299189580 0.232933909493629 0.263591632945859 0.285436715144849 0.23884517816562 0.241475198235693 0.247797931459007 0.23863034084861 0.232933909493629 0.256282279867035 0.252444606898957 0.248041531300573 0.234189332249434 1 1 + 3087236 3087631 3087387.167 3086161 3087914 + gene protein_coding_gene FALSE TRUE AT1G09540.1 MYB61 (myb domain protein 61); DNA binding / transcription factor Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. similar to AtMYB50 (myb domain protein 50), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G57560.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE81808.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.118345650636115 -1.18839844280245 0.259967201813822 1 0.0592376938954271 2.14961141531293 -0.118345650636115 0.0954746800108664
AT1G59940_at 2.68213678323094 2.6699850763704 2.47792724375543 2.15430265964807 2.20514147118045 2.37832363087558 2.36642636542942 2.66224597481978 2.65574678630487 2.34881605300649 2.79354657812078 2.47342966897801 2.46298547890137 2.66849108094152 2.75344856766466 2.84313712323332 2.46137148220430 2.51395726031499 2.66239913074292 0.207190136480651 0.208452627961765 0.215433751144027 0.215088588499363 0.210138318603117 0.208700196936201 0.218544040121584 0.215664907986684 0.224937459594641 0.210873538060913 0.209492289715162 0.208459287480906 0.214529372234306 0.208081453258865 0.210965672954570 0.211913253024145 0.216981136889884 0.208928306493672 0.210875111029764 1 1|0 -|/ 22069570 22070432 22069921.3 22069282 22070638 - gene protein_coding_gene FALSE TRUE AT1G59940.1 ARR3 (RESPONSE REGULATOR 3); transcription regulator/ two-component response regulator Type A response regulator highly similar to bacterial two-component response regulators. Rapidly induced by cytokinin. Involved in red-light signaling. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. Identical to Two-component response regulator ARR3 (ARR3) [Arabidopsis Thaliana] (GB:Q9ZWS9); similar to ARR4 (RESPONSE REGULATOR 4), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT1G10470.1); similar to response regulator protein [Dianthus caryophyllus] (GB:AAK14395.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.112816441785488 -1.18824450682654 0.260025346737399 1 0.0590752332629775 5.03803609819524 -0.112816441785488 0.0816080432757269
AT1G59520_at 5.90365595972123 6.13504695890105 6.04470000129501 5.68472232878452 6.90353438355732 5.49250240559604 5.87071735700888 6.08155687620718 6.23216801813783 5.80369365276782 6.51782110801478 6.14247305622469 6.6419581029255 6.79342937366316 6.00709763908538 6.5115329762649 6.22218586827301 5.96168161743933 5.85927587131462 0.242963296116736 0.241648410190238 0.245154931448306 0.242562385982051 0.258326990642507 0.267918079185931 0.247098900091983 0.238218768866605 0.268187474963045 0.250147316451233 0.240865248122565 0.24621704633403 0.242054336650614 0.240478942963531 0.238218768866605 0.238534737278154 0.260317024703795 0.259373720993898 0.246274289004788 1 1 + 21867855 21869523 21868959.727 21865049 21869855 + gene protein_coding_gene FALSE TRUE AT1G59520.1|AT1G59520.2|AT1G59520.3 CW7 Encodes CW7. similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAL91603.1); similar to Os07g0248800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059288.1); similar to Os04g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052185.1); contains domain gb def: CW7 protein (At1g59520) (PTHR21477:SF3); contains domain FAMILY NOT NAMED (PTHR21477)|similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAL91603.1); similar to OSIGBa0140C02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65852.1); similar to Os07g0248800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059288.1); contains domain gb def: CW7 protein (At1g59520) (PTHR21477:SF3); contains domain FAMILY NOT NAMED (PTHR21477) 0.209173556089111 1.18820175424318 0.260041497130131 1 0.0590301159365825 12.1719636914555 0.209173556089111 0.257763760778123
AT2G24460_at 0.728714050744077 0.652198337860917 0.41858662350338 0.28082580334615 0.394603142841158 0.85284359578788 0.507070952213999 0.599256247331294 0.696498276594878 0.743348546239333 0.60931728472673 1.02605842833461 0.867762609729514 0.457883185753434 0.858209628993093 0.407595676682892 0.784547720302853 1.31042262684965 1.21093296827616 0.186024687348808 0.192994251656462 0.189357780958493 0.192434312410122 0.189730475398306 0.189274127879971 0.190492594860157 0.187994367285349 0.199260848962159 0.199498562240757 0.190895395993787 0.195858731070224 0.190378683079403 0.200639292550104 0.196552678385650 0.194469793373968 0.194210748804655 0.202557979520937 0.199117724100516 2 2 + 10401629 10401970 10401803.091 10401409 10402470 + gene protein_coding_gene FALSE TRUE AT2G24460.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G24480.1) -0.114231862099894 -1.18806153338840 0.260094473105702 1 0.0588821477104997 1.39117129864113 -0.114231862099894 0.0853626470637515
AT1G72380_at 2.46440847509240 2.79342858270738 3.43475454037308 2.75540224968607 3.16168437230044 3.16890231503191 3.18729485514981 2.85759828802413 2.52092493078631 2.89239144157346 2.38617899903546 2.42833118730696 2.92540625426696 2.81864756840962 2.45372786138196 2.38568016084467 2.45191686865954 3.16337728938709 2.53598322604084 0.221150996349356 0.220981090904788 0.212884764093304 0.212939065318679 0.219748088357023 0.222864393675061 0.215895878428615 0.21743824307552 0.222425035811639 0.217463739868292 0.216082484100455 0.216776543543727 0.213963317187887 0.213830496298779 0.212884764093304 0.212884764093304 0.219207160203896 0.215017075895577 0.214348916299742 1 1|0 +|/ 27249171 27250497 27249782.1 27248832 27250525 + gene protein_coding_gene FALSE TRUE AT1G72380.1 similar to Conserved hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52107.1) 0.140697529982888 1.18758237689272 0.260275564647942 1 0.0583766163238333 5.61614661302652 0.140697529982888 0.142549748700951
AT3G02140_at 2.14834442244523 2.03258681421447 2.3915500728465 1.90825192708672 1.85442996815445 2.00849217354282 2.03155508837202 1.92708541709137 1.87259503364566 1.85721470630522 2.3361787083621 2.21417039308782 2.4809774168238 1.84235160552282 1.87867204908567 2.20278966996282 2.06667885675495 1.93629434059486 1.94634880561143 0.199444484746746 0.197306195695386 0.198241323364508 0.203298512383428 0.197306195695386 0.202891298413648 0.197306195695386 0.199040986087215 0.201048276342556 0.207552691807109 0.197588961228933 0.200584336845212 0.20311697760077 0.20115607781725 0.201391534920628 0.203912718118246 0.208340766038581 0.200528606904320 0.204076523698027 3 3 - 385556 386060 385801.273 385324 386545 - gene protein_coding_gene FALSE TRUE AT3G02140.1 TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29575.4); similar to Os07g0602900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060209.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94628.1); similar to Os03g0419100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050378.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 0.116749690690217 1.18746271350364 0.260320805560947 1 0.0582503900606542 4.04369547474176 0.116749690690217 0.0918374209484927
AT1G02100_at 7.83066702934663 7.73878643791145 7.91575008604463 7.56181505265552 8.38059224916854 7.9689558041861 7.34797459738709 6.70705223561256 7.21104298779834 6.24914437399905 6.30827607547282 6.47917374262632 6.95328535913515 6.29587671576481 6.09620040124833 6.65793351615528 7.09179276494021 6.51326260142214 6.98466920561183 0.199461624304264 0.196644554381482 0.199993453736326 0.196644554381482 0.21070818557491 0.202851237790390 0.197420065784595 0.204544866620625 0.210221637008104 0.196644554381482 0.208327991345142 0.203445313606001 0.206980013330710 0.198474447814819 0.204435035153013 0.196644554381482 0.209089903858617 0.218217146737347 0.197635503992043 1 1|0 +|/ 390511 391650 391067.25 389812 392816 + gene protein_coding_gene FALSE TRUE AT1G02100.1|AT1G02100.2|AT1G02100.3 leucine carboxyl methyltransferase family protein similar to Os06g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056749.1); similar to hypothetical protein DDBDRAFT_0219323 [Dictyostelium discoideum AX4] (GB:XP_636813.1); contains InterPro domain Leucine carboxyl methyltransferase; (InterPro:IPR007213) 0.142590590454247 1.18718663443547 0.260425205965159 1 0.057959206075078 14.3636628546551 0.142590590454247 0.146222290888549
AT1G26940_at 4.41910315960896 4.26027615542316 4.03832036137919 3.60984827377705 3.75989944294284 3.48330995989015 3.42335134774200 3.55295733189851 3.46067497540641 2.99035739563025 3.4767503696839 3.85939970556694 3.32992415264196 3.19505120245052 3.02962178933193 3.22328731731644 2.89193471911800 3.13124867841264 3.48556588796604 0.229574903206524 0.216496125219974 0.214114791185091 0.223275138169191 0.215275850773943 0.218719965851684 0.224971808433551 0.220640930938034 0.222388952033679 0.215305148115364 0.214114791185091 0.218947171507455 0.215783479163487 0.217674833366745 0.219882572948071 0.218116004802594 0.218149048869071 0.222411369501117 0.217379131419842 1 0|1 /|+ 9343541 9344381 9343899 9343113 9345132 + gene protein_coding_gene FALSE TRUE AT1G26940.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G44600.1); similar to 51434 (GB:AAD14500.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.118062333511560 -1.18704462931861 0.260478918652869 1 0.0578094513648498 7.10805908482416 -0.118062333511560 0.095119287831383
AT3G08840_at 3.20175687777216 3.63917960101387 3.42265713776033 3.21096928166042 4.10149627991826 3.19439018335582 4.03196379730669 3.53423630145946 2.73197253355133 2.83409159336134 3.34273700983536 2.83139066449822 3.53806432667849 3.12037699511881 3.47590187924563 3.69943954490245 3.04949167255886 3.76438608828572 3.10317421893585 0.198681878419606 0.199222266941726 0.211820083303217 0.192985145942116 0.203213040666324 0.201965233883131 0.202661464639897 0.199485946236313 0.192985145942116 0.196631472018037 0.202327700561135 0.192985145942116 0.199642150856618 0.203909371571743 0.193158329771023 0.192985145942116 0.218671618383407 0.198217938882846 0.193885465078845 3 3|0 -|/ 2682666 2683848 2683109.8 2679654 2686230 - gene protein_coding_gene FALSE TRUE AT3G08840.1|AT3G08840.2|AT3G08840.3 D-alanine--D-alanine ligase family similar to D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens] (GB:BAE45860.1); similar to Os07g0691200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060716.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain D-alanine--D-alanine ligase, N-terminal; (InterPro:IPR011127)|similar to D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens] (GB:BAE45860.1); similar to Os07g0691200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060716.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain D-alanine--D-alanine ligase, N-terminal; (InterPro:IPR011127); contains InterPro domain D-alanine--D-alanine ligase/VANA/B/C; (InterPro:IPR000291) 0.171785741821633 1.18679174691601 0.260574591764315 1 0.0575428018649033 6.66331600149252 0.171785741821633 0.197822336869500
AT1G69820_at 2.59621587461898 2.58305216693451 2.63029618440427 2.60870487931573 2.33793262122455 2.57353082554305 2.19491806484431 2.33161296213671 2.77103716941555 3.15843365164497 2.77918205192072 2.76182415683105 2.62478327964513 2.32433794059914 2.66067476349162 2.42327247970628 2.34814782372555 2.59574360306028 2.71037233910536 0.188373086304608 0.191185154559675 0.184413727468966 0.184413727468966 0.192937869534255 0.185107440040081 0.185656202661030 0.186155271218693 0.185295996704237 0.19571891888464 0.189735759771816 0.188200048405968 0.188082920974626 0.188856607677587 0.194543267688366 0.191267459520786 0.209047059746929 0.189912305217112 0.186032235150254 1 1 - 26287106 26287763 26287345.727 26286788 26287899 - gene protein_coding_gene FALSE TRUE AT1G69820.1 gamma-glutamyltranspeptidase family protein similar to GGT1, gamma-glutamyltransferase [Arabidopsis thaliana] (TAIR:AT4G39640.2); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAC45233.1); contains InterPro domain Gamma-glutamyltranspeptidase; (InterPro:IPR000101) -0.102017798597276 -1.18674104336582 0.26059377780214 1 0.0574893431205316 5.20437968859165 -0.102017798597276 0.0473396960451389
AT4G24600_at 1.48470850720206 1.48549790416489 1.79553508412401 1.88382414296823 0.891387467018543 1.49840294383842 1.08997088898751 1.44246656580308 1.63555695788968 1.43687004754311 1.34133275035988 1.34718116026375 1.08374857660826 1.48020950990827 1.67482085908754 1.4561805554981 1.65007548123756 1.55547698402733 0.91592383764953 0.224055241076120 0.216309079807467 0.21914060138911 0.218359772434604 0.215944905101023 0.222693427001335 0.221794487473509 0.222412969099615 0.216185087681465 0.224278261818018 0.215944905101023 0.215944905101023 0.228400990035336 0.217736838073817 0.225521066431977 0.221517885560867 0.218859300862308 0.220961336724646 0.222406804576060 4 0|4 /|+ 12700136 12700416 12700294.5 12699996 12700488 + gene protein_coding_gene FALSE TRUE AT4G24600.1 unknown protein 0.130402198272155 1.18663508017262 0.260633877490317 1 0.0573776275113808 2.83551344583898 0.130402198272155 0.122431321966542
AT3G46540_at 6.62416011067727 6.7393298075766 6.67259293359416 6.83716896718292 7.04612058945903 6.34147678443353 7.48619587453309 6.93254247594775 6.85233641643245 7.09192961832737 7.03595165687532 7.25181151369176 6.49240093293388 7.04130800141133 6.72970688809944 6.60568576514694 6.39859020735205 6.51233155603475 6.56386585104668 0.181814238974609 0.182135213358049 0.185892796063485 0.180365970019363 0.184836934662845 0.195080287898427 0.184752288279057 0.179669725838868 0.199484222775508 0.178914874748636 0.176820667782868 0.185991981171567 0.176462148044329 0.180415594610667 0.181362110038822 0.182726099850138 0.181661330537873 0.185733206372211 0.182625023844948 3 3 - 17145239 17145851 17145526.727 17145076 17146572 - gene protein_coding_gene FALSE TRUE AT3G46540.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT1G08670.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_451737.1); similar to Os01g0841000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044763.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.149393947629293 -1.18659202901197 0.260650170748708 1 0.0573322413793522 13.6322070814899 -0.149393947629293 0.158928291759392
AT2G38940_at -0.185459272354189 0.116097428493209 -0.104321934517444 -0.0220279807305747 -0.276445030084348 -0.237756198654351 -0.552875071193061 0.00645777109239258 0.0673452937859021 0.00876595937785142 -0.398351941288978 -0.419508005733349 -0.525871106976403 -0.0752578819938921 0.466143174359656 -0.18111849060215 -0.373560133096877 -0.248580415666064 -0.00307282494705355 0.268672070673769 0.262919348866983 0.262446775717264 0.275188762997365 0.274665055918068 0.265728215778438 0.264644562813175 0.264032175891316 0.274632490050924 0.292275578378792 0.271656972466071 0.288562226213469 0.262446775717264 0.278151997061074 0.273207650149005 0.264187588519154 0.275395637880014 0.262446775717264 0.269750654884663 2 2 + 16264316 16264432 16264387.5 16264306 16267303 + gene protein_coding_gene FALSE TRUE AT2G38940.1 ATPT2 (PHOSPHATE TRANSPORTER 2); carbohydrate transporter/ phosphate transporter/ sugar porter phosphate transporter (AtPT2) Identical to Inorganic phosphate transporter 1-4 (AtPht1;4) (H(+)/Pi cotransporter) (PHT1-4) [Arabidopsis Thaliana] (GB:Q96303); similar to ATPT1 (PHOSPHATE TRANSPORTER 1), carbohydrate transporter/ phosphate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43350.1); similar to PHT5 (phosphate transporter 5), inorganic phosphate transporter/ phosphate transporter [Arabidopsis thaliana] (TAIR:AT2G32830.1); similar to PHT3 (phosphate transporter 3), carbohydrate transporter/ phosphate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43360.1); similar to phosphate transporter 1 [Lupinus albus] (GB:AAK01938.1); similar to phosphate transporter [Catharanthus roseus] (GB:BAA20522.1); similar to inorganic phosphate transporter [Nicotiana tabacum] (GB:AAF74025.1); contains InterPro domain Phosphate permease; (InterPro:IPR004738); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.125026121434962 -1.18656176244490 0.260661625997068 1 0.0573003339821334 -0.254624764686474 -0.125026121434962 0.111086913668144
AT2G02280_at 2.98669712413624 3.07730462899913 3.00787310564241 3.0058813961645 2.41270782900232 3.04458207684716 2.55111279839656 2.8709406324667 3.46517436670946 3.68835699241763 3.14880365506498 2.89154270013532 2.99027183263923 3.5889586719193 3.30846838688909 3.14591379537041 3.14313343771388 3.10866401946529 3.11791543409477 0.183068821620972 0.187681390822033 0.185337718422981 0.181758580539469 0.201014210675721 0.181548736832602 0.187994080290347 0.181835182707173 0.183655078243394 0.182237488745591 0.180422543067275 0.186910042103749 0.180400167745438 0.182485008311878 0.183662084727488 0.179340522198109 0.181420475655121 0.184159536840931 0.189540850994009 2 2 - 600500 601414 600887 600490 601438 - gene protein_coding_gene FALSE TRUE AT2G02280.1 ATPP2-B4 (Phloem protein 2-B4) similar to ATPP2-B8 (Phloem protein 2-B8) [Arabidopsis thaliana] (TAIR:AT2G02340.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1) -0.130924364713245 -1.18639394263197 0.260725149424284 1 0.0571234273257887 6.16440502902703 -0.130924364713245 0.123557708839682
AT2G17640_at 8.42665895338222 8.22727906324646 8.66799101397032 8.47681227157828 8.77365643931136 8.81024059442498 8.46835840001302 8.47816061653312 8.08517839968893 8.32081062047867 8.39800868315238 7.94509722493596 8.15357607680033 8.2221289504107 7.67074534734894 8.29920247541746 8.55329175176547 7.9242670650788 8.26432748086406 0.150695444607303 0.155904526954300 0.147398168674210 0.150001469282635 0.150221058025913 0.147568185014840 0.154252679101231 0.151744463511575 0.163267732348254 0.158140265284911 0.15339433497839 0.150386263551326 0.150878962349119 0.155303688807663 0.171871728353670 0.148978064738871 0.158942579951058 0.166806974183383 0.149084977391265 2 0|2 /|- 7675321 7676054 7675703 7675160 7677577 - gene protein_coding_gene FALSE TRUE AT2G17640.1 AtSerat3;1 (SERINE ACETYLTRANSFERASE-106); acetyltransferase/ serine O-acetyltransferase Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation. Identical to Serine acetyltransferase 2 (EC 2.3.1.30) (AtSAT-2) (AtSERAT3;1) (SAT2) [Arabidopsis Thaliana] (GB:Q8S895;GB:Q9STB0;GB:Q9ZPJ4); similar to ATSERAT3,2 (SERINE ACETYLTRANSFERASE 3,2), acetyltransferase/ serine O-acetyltransferase [Arabidopsis thaliana] (TAIR:AT4G35640.1); similar to Putative serine acetyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAN05506.1); similar to Os03g0133900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048879.1); contains InterPro domain Serine acetyltransferase, N-terminal; (InterPro:IPR010493); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Serine O-acetyltransferase; (InterPro:IPR005881); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) 0.102205842357036 1.18636444412176 0.260736316511809 1 0.0570923335219617 16.7257589343280 0.102205842357036 0.0482497183674076
AT4G21060_at 4.37972440937487 4.15005998843478 4.48443492468315 3.87494063000048 4.14785791035669 4.32359293444269 4.27302574142298 4.42483713666184 4.37789865721576 4.36706939392003 4.24931345890747 4.58667458613453 4.16132111289674 4.1210503583586 4.55652329545655 4.62367590214407 4.36221524686339 4.25475176602339 4.82495665468099 0.213561444297845 0.203949969380239 0.209216561201732 0.209898842014907 0.2066395502803 0.204266060163043 0.208374474727511 0.206537525370684 0.208342178294051 0.215202894371251 0.207720470240176 0.212602497873852 0.212321043877968 0.209859619437257 0.207843753229392 0.204587192811067 0.217623710908162 0.205487565411555 0.219742613090220 4 4 + 11243973 11244842 11244529.818 11240741 11244871 + gene protein_coding_gene FALSE TRUE AT4G21060.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74800.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G27120.1); similar to putative galactosyltransferase family [Sorghum bicolor] (GB:AAL73538.1); similar to Galactosyltransferase family, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99401.2); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.129036369263517 -1.18635883546584 0.260738439792345 1 0.0570864216130511 8.70118368498236 -0.129036369263517 0.119665584470724
AT4G09700_at 0.298338355995284 0.069301892085643 0.302891708433778 -0.0680605599583786 0.102875167342986 0.426861016339656 -0.164651737910433 0.0813563080058309 0.243946371335498 -0.167282711384191 -0.044466307412101 0.0274452234512138 0.896298734445343 0.36291263941096 0.517337951887589 -0.0234661980750751 -0.104544358417070 0.473718341278043 0.344290606799998 0.197857851902438 0.195896248105491 0.198419964208017 0.197172300635684 0.197356704382814 0.193660653945467 0.195156587149640 0.203075024874895 0.206221001811346 0.216211597676735 0.196705317704138 0.196620004756184 0.208826575553701 0.198876331449034 0.196514493671203 0.197915827411934 0.194127060700087 0.202069321542552 0.195377435481389 4 4 + 6127414 6127860 6127662.273 6126772 6127887 + gene protein_coding_gene FALSE TRUE AT4G09700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06820.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) 0.121446021449720 1.18630013307039 0.260760663699964 1 0.0570245465144742 0.332850314910903 0.121446021449720 0.103189069449227
AT4G26700_at 9.45082413059885 9.52441433080318 9.54326568236482 9.4860283148877 10.1775728256690 9.67495688188419 10.3921754233569 10.1372654774919 9.89034215850763 10.2135645508704 10.1532720037533 9.8969243483232 9.94583752919377 9.92077065238498 9.71223604064782 10.1175865392198 9.90585856603991 10.0800768770089 10.0460071531124 0.096538503670297 0.0913633447326133 0.0942731844814267 0.0933256296464316 0.0913174666857144 0.100309972313100 0.093641383920743 0.0910736671683322 0.100695252006224 0.09234601197313 0.0924049652577496 0.0910233015743316 0.0923065995246624 0.0923107629554545 0.0914838419006503 0.0906445898663108 0.104139228794433 0.094218811283847 0.0926208732266054 4 4 + 13466573 13467385 13467057.636 13463122 13467607 + gene protein_coding_gene FALSE TRUE AT4G26700.1|AT4G26700.2|AT4G26700.3 ATFIM1 (Arabidopsis thaliana fimbrin 1); actin binding fimbrin-like protein Identical to Fimbrin 1 (AtFIM1) (FIM1) [Arabidopsis Thaliana] (GB:Q7G188;GB:O49182;GB:O49963;GB:Q9SZ12); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G35700.1); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT2G04750.1); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G55400.1); similar to Os02g0588300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047274.1); similar to Os02g0719100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047943.1); similar to fimbrin/plastin-like [Triticum aestivum] (GB:AAC49813.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) -0.119557441143304 -1.18622230830247 0.260790129377891 1 0.0569425190832389 19.8065836869162 -0.119557441143304 0.0988524687819849
AT1G26690_at 7.24934689120735 7.499780793897 6.9721952193783 7.31660200626501 6.85550899540901 5.9434948849155 5.62035272542504 5.92598193659645 6.10582388210525 4.96201180136878 5.25489795649918 5.83832593504717 5.66128759015084 5.71349274226897 5.29724490758077 5.68534701298639 5.20568971068209 5.83280987606159 5.2354749726689 0.219492400419513 0.227698766291200 0.227556649178426 0.223146181609087 0.225819431652426 0.219574875958248 0.225013682020678 0.229311765516853 0.231155335906729 0.224607551202525 0.225294913814846 0.219492400419513 0.22646783410349 0.224550294560166 0.220059197429581 0.219492400419513 0.231130915781188 0.231077229952477 0.224442818883674 1 1 - 9224324 9225576 9225117.545 9224132 9225762 - gene protein_coding_gene FALSE TRUE AT1G26690.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G69460.1); similar to Os03g0376000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050219.1); similar to GOLD [Medicago truncatula] (GB:ABE86767.1); similar to Os07g0632700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060368.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.162392385369571 1.18601515208414 0.260868574790413 1 0.0567241958284804 12.170694857532 0.162392385369571 0.182037724024368
AT3G15490_at 0.315842309521679 0.359207716985395 0.50049412646985 0.719172122002961 0.409953498625721 0.652145571483593 0.736409816425287 0.283320560540842 0.694740927579125 0.276280615378977 0.552030841391362 0.299654880561305 0.549022420928508 0.496877442329314 0.669984420074435 0.526678594148373 0.843950938765942 0.767320610251909 0.521701437809237 0.215571658799375 0.205293346094484 0.214464200800941 0.205406606291659 0.21082828865884 0.204857945877315 0.205731876137975 0.209539019723591 0.213502868777533 0.216979944351144 0.227055211478162 0.206770400170127 0.209747073112164 0.215860928344036 0.204857945877315 0.205017933045473 0.212790880379886 0.214995535765576 0.207883171224535 3 3|0 +|/ 5229835 5230587 5230284.8 5229131 5230653 + gene protein_coding_gene FALSE TRUE AT3G15490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14830.1); similar to Os03g0710000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051046.1); similar to Protein of unknown function DUF292, eukaryotic [Medicago truncatula] (GB:ABE90208.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.118680960205589 1.18567906707762 0.260995882290278 1 0.0563700547445335 1.03995038799634 0.118680960205589 0.0969179505573616
AT2G17920_at 0.707414131675074 0.864264335188728 1.03696672276184 0.60104898216958 0.651808252293743 0.713378206265897 0.752997335012155 1.07269091816163 1.26405956214659 0.96082319039504 0.864771658859295 0.521281158628648 0.998746920639047 1.06005830363074 0.908178782857714 0.482324249836732 1.0284931036479 1.07286057607459 0.795504501235567 0.191763213332740 0.193039205048481 0.199240114996106 0.188095841968509 0.188095841968509 0.19069536219215 0.189731541790085 0.191505974432603 0.188095841968509 0.191404103987697 0.188441205312768 0.188234902839933 0.192400585426853 0.193257092929805 0.188095841968509 0.194184755662418 0.189718375665215 0.190570595624636 0.188095841968509 2 2 + 7790326 7790608 7790462.8 7789794 7791369 + gene protein_coding_gene FALSE TRUE AT2G17920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41590.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain Retrovirus zinc finger-like domains (SSF57756) -0.119123773061933 -1.18556930642280 0.261037469764301 1 0.0562544135910372 1.73701365820653 -0.119123773061933 0.09798945994966
AT4G25220_at 1.71675652544674 1.5608428276802 1.69630081865845 1.87729278636163 1.37301434222521 2.02899330318109 1.36949343997181 1.59215275198473 2.31804988380587 1.75082709954298 1.69739832147573 2.06429994940834 1.72712494527626 1.56787804891012 2.25632315003738 1.91543409325387 2.45979690183790 2.1673427097834 1.63524019752494 0.227103485791560 0.229787381165599 0.237233917061632 0.229771479353408 0.239332422792727 0.235722012475909 0.233436143864952 0.231756759463373 0.247020717098625 0.234121651316145 0.238355730395425 0.227225555623185 0.238705424493790 0.227103485791560 0.233372705854688 0.229461769645561 0.227103485791560 0.232611901300393 0.229405488813820 4 0|4 /|+ 12922263 12922585 12922416.6 12920937 12922895 + gene protein_coding_gene FALSE TRUE AT4G25220.1 transporter, putative similar to glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative [Arabidopsis thaliana] (TAIR:AT3G47420.1); similar to transporter, putative [Arabidopsis thaliana] (TAIR:AT1G30560.1); similar to Os08g0156600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061024.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.132333148854501 1.18469161192675 0.261370209775915 1 0.0553299859304596 3.59351692874997 0.132333148854501 0.12680936838607
AT1G58200_at 10.0261428254643 9.94453098980482 9.62357949055879 9.48506944660872 9.90481390729655 9.68205907328082 9.75430559783758 9.53153478339883 9.58515549917653 9.84318700137376 9.72573926517727 9.64858975643456 9.60592160190308 9.5924731311042 9.53590961914366 9.66460381543565 9.58887025264185 9.61806336382031 9.65188389810343 0.0837356267401184 0.0823310789720083 0.0815062976835904 0.0817748118092082 0.0827325686726079 0.0839846326392726 0.0817401322484297 0.0837465455675206 0.089194160976201 0.0804931867979338 0.0826747720842246 0.0804154602790742 0.0804154602790742 0.0836437740726816 0.0849865733687283 0.0810261724250396 0.0869587223831942 0.0843103981015266 0.0821654098678327 1 1 - 21552104 21552602 21552344.091 21551852 21556792 - gene protein_coding_gene FALSE TRUE AT1G58200.1|AT1G58200.2 MSL3 (MSCS-LIKE 3) A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. similar to MSL2 (MSCS-LIKE 2) [Arabidopsis thaliana] (TAIR:AT5G10490.1); similar to 117M18_28 [Brassica rapa] (GB:AAZ66947.1); contains InterPro domain MscS mechanosensitive ion channel, C-terminal; (InterPro:IPR011066); contains InterPro domain MscS Mechanosensitive ion channel, transmembrane; (InterPro:IPR011014); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain MscS Mechanosensitive ion channel; (InterPro:IPR006685) -0.105567759266919 -1.18449222041619 0.261445847128631 1 0.0551200496000345 19.4019695894107 -0.105567759266919 0.0612065932955909
AT4G17895_at 3.87257433521861 4.50456154830192 3.70664127561782 3.97380981221229 4.54693130012842 3.81449846567040 3.66371754537061 4.17051053608224 4.27172529273145 3.81963949773310 4.17410518664837 4.15278840348214 3.90128570302381 4.24140406369096 3.14763359933078 3.75214433450215 3.21690477560580 3.45054172417503 4.06243823308876 0.230427110055935 0.23808536113367 0.239119772881389 0.235914413039217 0.226241624164955 0.241299742116144 0.233895447591491 0.230875477950103 0.233989270898234 0.226241624164955 0.226241624164955 0.226241624164955 0.237388086252618 0.232868637948202 0.232478527446009 0.228463842187707 0.230046493332542 0.236191795771508 0.233788739371881 4 4 + 9941978 9942669 9942250 9939708 9942716 + gene protein_coding_gene FALSE TRUE AT4G17895.1 ubiquitin-specific protease 20, putative (UBP20) similar to UBP21 (UBIQUITIN-SPECIFIC PROTEASE 21), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G46740.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 [Medicago truncatula] (GB:ABE85427.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.169518739273253 -1.18447447274950 0.261452580381732 1 0.0551013646376896 7.93458992648786 -0.169518739273253 0.194567926455842
AT4G17040_at 10.8945021879935 11.0780045111947 11.1398881768673 11.0619035906993 11.5736795639379 11.2138908819315 11.2710970132312 11.1318460776577 11.0340084721384 10.8144289775609 11.1235989607234 10.9336816013806 10.8911412400562 10.9956362652901 10.9854226177655 11.0680815001606 10.8123275203740 10.9696199488647 10.8691187559836 0.109704158716767 0.105442838857192 0.112234023290133 0.111653988409439 0.111207590823151 0.116644022675290 0.112766901361384 0.116619923695245 0.122428547048729 0.107825113384310 0.111472170911251 0.111918520161228 0.105308044847830 0.114385984423826 0.109448502264401 0.107375360919733 0.114913242929328 0.110042749601330 0.108416481909147 4 4|0 -|/ 9586964 9588265 9587743.1 9585724 9589381 - gene protein_coding_gene FALSE TRUE AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative similar to endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G09130.2); similar to putative ATP-dependent Clp protease proteolytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD81195.1); similar to Os01g0271400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042707.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.110032372052818 1.18359936089877 0.261784757208726 1 0.0541802976455878 22.1097468881331 0.110032372052818 0.0751530434376197
AT4G25240_at 1.57191160845382 1.51148655214928 1.84219637318159 2.01801181013914 1.66093391868635 1.74411880107699 1.47931863937557 1.61266720744088 2.19349397833099 2.36338277900619 1.78707208841018 1.62973678124028 1.83197613354772 1.56880046662353 2.06476181014448 1.65501046031078 1.91294525065129 1.70894511273499 2.17355112271784 0.173591940823547 0.167933387367091 0.179592148805219 0.173338573999952 0.173647613573463 0.167933387367091 0.170362584295995 0.169406255441452 0.176099992800866 0.172957579629775 0.172757602886596 0.171080425903517 0.180442099393772 0.177886794255590 0.170902077447378 0.167933387367091 0.176779465188417 0.175270001199520 0.175066292419729 4 4 + 12932692 12933352 12932977.273 12930412 12933902 + gene protein_coding_gene FALSE TRUE AT4G25240.1 SKS1 (SKU5 SIMILAR 1); copper ion binding Encodes GPI-anchored SKU5-like protein. Identical to Monocopper oxidase-like protein SKS1 precursor (SKS1) [Arabidopsis Thaliana] (GB:Q8VXX5;GB:Q9SB39); similar to SKU5 (skewed 5), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G12420.1); similar to SKS2 (SKU5 SIMILAR 2), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G51480.1); similar to SKS3 (SKU5 Similar 3), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G48450.1); similar to C-terminal peptide-binding protein 1 [Zea mays] (GB:BAE95064.1); similar to Os06g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056550.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:BAC55686.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.100550361572151 -1.18347481723517 0.261832058823527 1 0.0540492554508998 3.68677160030107 -0.100550361572151 0.0421287070729766
AT3G61920_at 2.47934691760045 2.08918226278812 2.33895488561105 2.31138279547902 2.18113532682539 2.30563731439948 2.54290527789295 2.13729873483249 2.81306665340632 2.31401044346338 3.13840785225886 2.78908965988519 2.34653849862098 2.78106224825198 3.34392346454091 2.58034341084285 2.81286210786533 3.33176852229315 2.7425431267497 0.216621915440233 0.219228536752137 0.215084419007357 0.221103249984811 0.218743874222992 0.221496912486403 0.222028320329027 0.220798744414203 0.221003481599398 0.216174204436311 0.214848598510292 0.218401955931365 0.216616612865177 0.218937207654038 0.217964076384081 0.218745886624625 0.219780550263785 0.215227352822092 0.214330030451642 3 3 - 22943642 22944079 22943864.364 22943471 22944337 - gene protein_coding_gene FALSE TRUE AT3G61920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64700.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79778.1) 0.119693505831838 1.18327605600818 0.261907562200090 1 0.0538401446362732 5.0550835453168 0.119693505831838 0.0998641009264546
AT2G16940_at 8.02043658058824 7.98867546867742 7.72860563280059 8.05653106473621 8.21512073087282 8.14045279251082 7.99119557568118 8.16597166833516 6.94624294605613 7.62031255739158 7.84799897511586 7.8589825211551 7.62124720519035 7.80828975893954 7.56240717008579 8.22984967302661 7.79069274515257 6.60619837716403 7.77042892638505 0.214830758137005 0.204923318905718 0.207028634502151 0.204037503606213 0.214091509577534 0.220370175534033 0.203724368188588 0.216312833402237 0.225123693697948 0.230009439773159 0.206398437542888 0.206188041978199 0.216105689282352 0.239578239595496 0.212477458556416 0.203724368188588 0.232478860831226 0.230844665665772 0.212991665800225 2 0|2 /|- 7349964 7350814 7350458.111 7349689 7354490 - gene protein_coding_gene FALSE TRUE AT2G16940.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G09880.1); similar to RNA-binding re (GB:ABE81620.1); contains InterPro domain Splicing factor, CC1-like; (InterPro:IPR006509); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.106827279263711 1.18268923988144 0.262130576139792 1 0.053222927154458 15.5940585791951 0.106827279263711 0.0658212772777442
AT1G57670_at 1.37516554815751 1.23687572768379 1.55880565410058 1.76858890803440 1.22508730848911 1.30497920202001 1.15611310923224 0.984654340999999 1.50337582610035 1.40562094776890 1.24312584908768 1.44277419932275 1.24898964791400 1.82593671818734 1.19896481315179 1.35704106520924 1.40032617285809 1.24557821887903 1.40971500963998 0.176923297816163 0.177555939745501 0.184475441253318 0.178330751988968 0.178424188195591 0.184854765190002 0.180212343484429 0.178486662382831 0.187465513677545 0.189688553637236 0.184169019167285 0.177035092127792 0.186197295707879 0.183163934223169 0.193371756312846 0.187521572565284 0.189786353466128 0.189572324600941 0.17823842817094 1 1 - 21360835 21361391 21361113.818 21360834 21363537 - gene protein_coding_gene FALSE TRUE AT1G57670.1 Toll-Interleukin-Resistance (TIR) domain-containing protein similar to Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03030.1); similar to TIR [Medicago truncatula] (GB:ABE82717.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.103467288857901 1.18257594434666 0.262173650291738 1 0.053103788661732 2.73124006487936 0.103467288857901 0.0544266992546403
AT3G61210_at 10.2517010988324 10.1490747564610 10.5351289548789 10.4452708556548 10.8980772966631 10.4109327345362 11.0991218619177 10.84409260958 10.4589552830635 10.3268015801229 9.96507093644038 9.88781209366368 10.2312792029746 10.1264009501426 9.47432859313346 10.4864430650119 10.6144424371335 10.0069914240476 10.1835855244796 0.0843246863817903 0.0817411875951265 0.0865077171335654 0.0844787780059495 0.0826890608812135 0.0881276121956388 0.0845575507835196 0.0880650892053652 0.0873446935020971 0.0823159922091592 0.0831712242711394 0.0829930400761552 0.0849639079685342 0.0879036889638755 0.0868046176655289 0.0816198222369803 0.0872698764044964 0.0831241752578734 0.0855417281078716 3 3 - 22669990 22670375 22670191.182 22669653 22670845 - gene protein_coding_gene FALSE TRUE AT3G61210.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT1G55450.1); similar to embryo-abundant protein EMB-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89030.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.118831581334025 -1.18244515683177 0.262223381713401 1 0.0529662667783398 20.7902801295857 -0.118831581334025 0.0980406811712608
AT3G09590_at 1.75802275789454 1.57356474471941 1.32302853987634 0.77324733122575 1.28296291140702 1.35960922263150 1.22114798619525 1.04292073680797 1.72944684106984 1.42206737778885 1.77554476708483 1.10158234116950 0.975551495684167 1.20024331748014 1.40365366522775 1.23927688979230 1.58488613785611 1.54191073702624 0.997612157934002 0.26162852884448 0.258334859857536 0.264194854875925 0.258564568971417 0.263548882944760 0.257186223509203 0.252380579715207 0.251896422239075 0.259427770408590 0.253771383773213 0.259005052021745 0.247787313677669 0.250425301988901 0.247787313677669 0.251972267699608 0.254281237746895 0.249360961671689 0.256410859293164 0.247787313677669 3 3 + 2944958 2945452 2945232.545 2944958 2945518 + gene protein_coding_gene FALSE TRUE AT3G09590.1 pathogenesis-related protein, putative similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G02730.1); similar to Pathogenesis-related protein PRB1-3 precursor (PR-1B) (HV-8) (GB:P35793); similar to Pathogenesis-related protein 1 precursor (GB:Q05968); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.122206505900788 -1.18237290959574 0.262250856622590 1 0.052890304382452 2.65974967610107 -0.122206505900788 0.105821723519667
AT4G12350_at 1.43647655938562 1.26062551443694 1.61795122424740 1.51450511045801 1.18063728737023 1.53434172652013 1.61559502771235 1.19405425995069 1.89912932451091 2.00645162410519 1.78823432668807 1.27319618973483 1.5411671655773 1.25181317296104 2.14036378439514 1.50480177144102 1.39868054646158 1.62491461117089 1.76809284601689 0.187228658693798 0.190737954604850 0.190608923819542 0.188717673151191 0.190273461450626 0.193026542360349 0.190841558799928 0.193372739865895 0.190686421227752 0.194171601095769 0.191045247031153 0.201355810188265 0.196518194218813 0.189206731133100 0.187913718151950 0.194896159824188 0.204608198879904 0.198126006123435 0.185972055502623 4 4 + 7326127 7326602 7326411.636 7324910 7326633 + gene protein_coding_gene FALSE TRUE AT4G12350.1 MYB42 (myb domain protein 42); transcription factor Encodes a putative transcription factor (MYB42). similar to MYB85 (myb domain protein 85), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G22680.1); similar to myb-related transcription factor [Pimpinella brachycarpa] (GB:AAF22256.1) -0.12032857768986 -1.18231158730501 0.262274178665006 1 0.052825831469189 3.14758386089253 -0.12032857768986 0.101562321573070
AT3G52540_at 2.07278266292536 2.29150041000055 2.05326138037027 2.35898978566564 1.69225949757136 2.31457703587507 1.96682075254973 2.35313323913462 2.29466501833031 2.23609560016142 1.79904134257642 2.29203680508826 2.33045484554191 1.95900026802547 1.59015066695144 2.18766650993667 2.58199994120871 1.89105799092610 2.34708282118369 0.203390881252333 0.204376527220880 0.200488365768884 0.202427065030768 0.201341406895850 0.199140189745099 0.196395044152978 0.202873372577423 0.209174643856155 0.202180537798923 0.194902513958027 0.193841831495875 0.201713540052034 0.193841831495875 0.195858854593716 0.194948145754227 0.197431562165105 0.196678336544449 0.209855972523465 3 3 - 19499791 19500120 19499944.818 19499530 19500828 - gene protein_coding_gene FALSE TRUE AT3G52540.1 ATOFP18/OFP18 (Arabidopsis thaliana ovate family protein 18) similar to ATOFP15/OFP15 (Arabidopsis thaliana ovate family protein 15) [Arabidopsis thaliana] (TAIR:AT2G36050.1); similar to H0913C04.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86167.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) -0.139987887445954 -1.18191791160269 0.262423940049622 1 0.0524119895031234 4.32368585859841 -0.139987887445954 0.142475996829946
AT1G51260_at 2.48498265864477 2.49155732503160 2.91847954227100 2.75202001662329 1.96546212454390 2.26778560001907 2.08384416002747 2.69420583197510 2.72566479679091 2.8699843222866 2.65240750502260 2.69515041163354 2.63483260509741 2.37881418725689 2.82581821304391 2.56167394387834 2.32030305110775 2.51852039232703 3.01261605915073 0.201504939099554 0.195872094410395 0.197421480955582 0.201546628364652 0.203051543551100 0.197961099625062 0.213086646784701 0.197137209144090 0.218379146233388 0.19610381379804 0.196452878193125 0.196895076112523 0.202252701753686 0.194052530787839 0.203957917184276 0.199293630251687 0.211693141740494 0.194739398327398 0.198909158533527 1 1 - 19007152 19008024 19007597.455 19007044 19009309 - gene protein_coding_gene FALSE TRUE AT1G51260.1 LPAT3 (Lysophosphatidyl acyltransferase 3); 1-acylglycerol-3-phosphate O-acyltransferase ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE, PUTATIVE SIMILAR TO ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE GI:4583544 FROM [BRASSICA NAPUS] Identical to 1-acyl-sn-glycerol-3-phosphate acyltransferase 3 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 3) (LPAT3) [Arabidopsis Thaliana] (GB:Q9SYC8); similar to LPAT2 (Lysophosphatidyl acyltransferase 2), 1-acylglycerol-3-phosphate O-acyltransferase [Arabidopsis thaliana] (TAIR:AT3G57650.1); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase (putative) [Limnanthes douglasii] (GB:CAA88620.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.129346180230282 -1.18178823241054 0.26247328713573 1 0.0522756901734998 5.17872303976553 -0.129346180230282 0.12134733877124
AT4G04470_at 8.3839042906468 8.56507782586945 8.95420287535747 8.93080798780397 9.1013704058232 8.6109827439421 8.41195299907784 8.64699949497198 8.12822619384991 8.17028069821085 7.51461138780607 7.84095248009302 8.09749301888055 8.0530309973087 7.27504066784163 7.90962824602 8.07604356131094 8.18409276506609 7.78464305432844 0.164610529456900 0.163917755705646 0.165882873976090 0.179546915004049 0.167846049473805 0.163185397281695 0.169626695929219 0.166784686033932 0.182884983145704 0.169799283544570 0.169946342190436 0.17365032369623 0.165703277499559 0.169623133029857 0.183705196507345 0.173578257168113 0.182398232105528 0.174262178602179 0.168410025593360 4 4|0 -|/ 2227989 2229177 2228615.778 2227659 2229278 - gene protein_coding_gene FALSE TRUE AT4G04470.1 PMP22 (peroxisomal membrane protein 22) 22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer. Identical to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein) (PMP22) [Arabidopsis Thaliana] (GB:Q9ZS51); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14305.1); similar to Os08g0566900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062544.1); similar to Os02g0226000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046343.1); similar to hypothetical protein DDBDRAFT_0188787 [Dictyostelium discoideum AX4] (GB:XP_635840.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.119251171167325 1.18138951993909 0.262625055848031 1 0.0518566940319163 16.6489514726052 0.119251171167325 0.0992763920493282
AT2G24610_at 0.832538471691138 0.554772594430517 1.09100668209195 0.821833867803577 0.528718787350883 0.977138381030708 0.89521533845141 0.824504026780584 1.34954172678213 1.29677707390283 0.753139854439816 0.6352224801758 1.29081488033486 0.963682279537068 0.980864173555398 0.828800111144766 1.16199848064496 1.04282848939418 1.18456120819524 0.199865261973507 0.194678754454038 0.201056013941808 0.204007451625905 0.194930381187827 0.198914670474739 0.198664748349153 0.196479795008654 0.201468915106156 0.204454682407861 0.203864893046841 0.200022371673732 0.198928474165867 0.201564048138705 0.196864878555586 0.206845814851584 0.197402464722414 0.198334572813797 0.196366141527827 2 2 + 10466857 10467385 10467123.182 10464124 10467587 + gene protein_coding_gene FALSE TRUE AT2G24610.1 ATCNGC14 (cyclic nucleotide gated channel 14); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 14 (Cyclic nucleotide- and calmodulin-regulated ion channel 14) (CNGC14) [Arabidopsis Thaliana] (GB:Q9SJA4); similar to ATCNGC16 (cyclic nucleotide gated channel 16), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G48010.1); similar to ATCNGC17 (cyclic nucleotide gated channel 17), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30360.1); similar to ATCNGC18 (cyclic nucleotide-gated ion channel 18), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT5G14870.1); similar to putative cyclic nucleotide and calmodulin-regulated ion channel [Oryza sativa (japonica cultivar-group)] (GB:BAD36523.1); similar to Cyclic nucleotide-binding; Ion transport protein [Medicago truncatula] (GB:ABE89042.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938) -0.120937168787921 -1.18124396129993 0.262680479551784 1 0.0517037569692441 1.93278044201056 -0.120937168787921 0.103209097569916
AT4G14780_at 1.48219309948546 1.68493647631485 1.33360974706596 1.65981535656766 1.65981014786464 1.77699806991173 1.76707407620862 1.62681081007683 1.95298034941499 2.23580647286205 2.00455481554566 1.55985339027183 2.31809860775802 1.40432867360116 2.05196036033669 1.65011443874289 1.40348397807106 2.0202688881019 1.77339881820458 0.265363416605159 0.240291642583122 0.258000452798251 0.256032769303167 0.240356101480196 0.248651281725599 0.248804925681902 0.2446526599898 0.256234633865925 0.249492802045368 0.252160842980376 0.250020024245084 0.255753586442039 0.244494617777741 0.242458050453529 0.247348274544587 0.242837450900491 0.249612416208918 0.249736719115584 4 4|0 +|/ 8493675 8494429 8494063.375 8492827 8494586 + gene protein_coding_gene FALSE TRUE AT4G14780.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G22750.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06453.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.109253802304585 -1.18100935028488 0.262769830739570 1 0.0514572833506264 3.51839502671073 -0.109253802304585 0.0736086277125381
AT3G13910_at 7.46023098941591 7.75148488362423 7.40645250707755 7.71668225079924 5.56775318439546 6.07234266762986 4.23557367193262 5.18291507691404 5.09792107275007 4.65331542939489 4.75160678299649 4.73682217827996 4.77705683570279 4.49763106366941 4.27341104571572 4.77277394905102 4.25549163079695 4.65054860038905 4.58422245251661 0.260573978084083 0.260410914097885 0.258272673813259 0.258677402129915 0.253876638030298 0.26392911665493 0.257125721369371 0.255303402175355 0.256250226885041 0.253876638030298 0.256109989582113 0.254762208950086 0.264958956746060 0.261912247839447 0.253876638030298 0.253876638030298 0.258919411073630 0.253876638030298 0.253876638030298 3 3 - 4591163 4591406 4591288 4590926 4591490 - gene protein_coding_gene FALSE TRUE AT3G13910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19460.1); similar to hypothetical protein MtrDRAFT_AC152551g19v1 [Medicago truncatula] (GB:ABE86249.1) 0.172093969804241 1.18075575218136 0.262866440078208 1 0.0511909041395522 11.1081314434965 0.172093969804241 0.199811646353397
AT4G08380_at 2.59521025569135 2.88401311310462 3.01074507884294 3.23710713573475 2.54309698349042 2.81179062835188 1.88985337060694 2.90534689275615 2.81119066985812 2.77212103638436 2.90124500222832 3.02107630120857 3.15982063558861 2.48136344538533 2.33091759545683 2.75332794967837 2.67701022725871 2.51799325031473 2.59753974140255 0.220804582352404 0.218108015155823 0.228225783283778 0.222915554231054 0.230610070768764 0.224306579923935 0.229730359727644 0.221123322541789 0.224542206484905 0.222942256712201 0.221522854808112 0.219816814586424 0.219415032540548 0.223843593761140 0.22391930124478 0.218108015155823 0.219233818165990 0.223450597832797 0.221567008004482 4 4 - 5311105 5311205 5311161 5311090 5312403 - gene protein_coding_gene FALSE TRUE AT4G08380.1 proline-rich extensin-like family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G26240.1); similar to extensin class 1 protein [Vigna unguiculata] (GB:CAA62943.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) 0.167736433453413 1.18030154496644 0.263039542356511 1 0.050713913187916 5.46329282404152 0.167736433453413 0.192555509819926
AT1G74860_at 4.05816152888126 4.30497269036495 4.11959011988207 4.34938679467821 5.47808771993432 4.93088744223718 4.92332754152507 4.38032863685833 4.14776856732791 4.30148239380835 4.15223743267658 4.58696568520597 4.30672092817740 4.43838293782106 4.15781946559651 4.47113388291715 3.9076106615305 4.14081821336457 4.42121361052943 0.238944458371809 0.238986985161560 0.244870286024753 0.248295052859267 0.243839961925146 0.250636895329506 0.243751849756972 0.246755627653475 0.251778663250341 0.252467636374239 0.239401521464455 0.238944458371809 0.241997779353894 0.249317977708142 0.251858142066724 0.246600038435692 0.25650513553512 0.244934928532935 0.246797953421183 1 1 + 28128674 28129213 28128912.364 28126980 28129543 + gene protein_coding_gene FALSE TRUE AT1G74860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19010.1); similar to hypothetical protein LES1_20t00016 [Lycopersicon esculentum] (GB:AAX95765.2) 0.14142335673243 1.18014627347947 0.263098738263476 1 0.0505508848059194 8.84827581336173 0.14142335673243 0.145612745183180
AT4G00810_at 10.1632538498463 10.2654520424100 9.8903807391049 9.88434179449174 9.9864502056255 9.56972465460123 10.2194246612520 10.4071685380117 9.4032933816724 10.1973184874276 10.3913902954070 10.6104269631640 9.9841389653321 9.92496082894884 10.7768301261760 10.0689389130363 9.29539440218542 9.57651934254472 10.0127713211752 0.111939218950890 0.111939218950890 0.112579266353344 0.113621218183458 0.114136825421929 0.124460921692506 0.118824145557618 0.111939218950890 0.122081483763973 0.116189671328031 0.114366805682758 0.112521282785440 0.117678128818437 0.117977569216211 0.117322952858974 0.111939218950890 0.139952280341458 0.128845692656784 0.115107805266059 4 4|0 -|/ 346179 346928 346491.333 345952 347199 - gene protein_coding_gene FALSE TRUE AT4G00810.1|AT4G00810.2 60S acidic ribosomal protein P1 (RPP1B) Identical to 60S acidic ribosomal protein P1-2 (RPP1B) [Arabidopsis Thaliana] (GB:O23095;GB:Q9ASX0); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.111826587458304 -1.17997735907608 0.26316314733959 1 0.0503735503313296 20.0231259155135 -0.111826587458304 0.0810570177222019
AT3G03670_at 1.91736803498063 1.58578348982088 1.71433223958412 1.91130667599716 1.87191531115382 1.4807886471715 2.09218031932366 1.56124594289293 2.05016501630044 2.07508059872016 2.02133248287055 1.68002461429210 1.89349634318313 1.84033798169342 2.07052628144529 1.89862176165436 1.87353460879081 2.14785245482332 2.33254870524720 0.196384069804372 0.194388920873295 0.191420651115069 0.202459236667001 0.193146138304444 0.197181230692410 0.191775024188534 0.195934621081465 0.193183454967869 0.196355861237165 0.191217721231213 0.191548641557948 0.194776999036727 0.190880284459511 0.201286657770617 0.199743992123369 0.197369902536770 0.206415177547392 0.195158863012483 3 3 - 902021 902653 902304.091 901848 903418 - gene protein_coding_gene FALSE TRUE AT3G03670.1 peroxidase, putative Identical to Peroxidase 28 precursor (EC 1.11.1.7) (Atperox P28) (ATP39) (PER28) [Arabidopsis Thaliana] (GB:Q9SS67); similar to peroxidase 57 (PER57) (P57) (PRXR10) [Arabidopsis thaliana] (TAIR:AT5G17820.1); similar to Os01g0543100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043276.1); similar to putative peroxidase ATP6a [Oryza sativa (japonica cultivar-group)] (GB:BAB89258.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.134470509469842 -1.17978266775676 0.263237400879357 1 0.0501691777764702 3.80727204404062 -0.134470509469842 0.132204998972189
AT3G32960_at 0.682903665930558 1.10260857605657 1.14023719662357 1.28775345472332 0.750034939217236 1.08317045570062 0.8009631969333 1.08309342045355 0.531753082127914 1.07721071995772 0.685242961647015 0.726178158711739 0.770291376957493 1.01776062557079 1.05042561393990 1.01705164139806 1.02086765478295 1.09306466461428 0.865818425102222 0.225018099514772 0.225830679378753 0.220492402034123 0.219566694673992 0.217429067635473 0.229787795586402 0.214697844067883 0.222916890834207 0.218375851841645 0.224859631272911 0.215682619413901 0.216750843435528 0.225193933841584 0.226390029285439 0.219641759483452 0.217736703137993 0.218966529349587 0.219677693922843 0.224735324457212 3 3|0 +|/ 13503509 13504038 13503743.2 13503390 13504128 + gene protein_coding_gene FALSE TRUE AT3G32960.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G47260.1) 0.122794862431425 1.17924728258035 0.263441677174259 1 0.0496073012544604 1.86511448633754 0.122794862431425 0.107863181608906
AT2G30570_at 13.1831955089588 13.3331558904970 13.3640167431965 13.3164057090388 13.2690079172210 13.2284575582172 13.3430073553971 13.5003932069611 13.9792580949212 13.8230939694624 14.1959964993536 14.2771799070283 14.0465531219564 14.0497458944012 14.0540317352618 14.1136479198406 13.8303724040705 14.1906589284223 13.7482075658376 0.0731638564286165 0.0710825076908526 0.0768882341974408 0.0700896682620357 0.0712689901019364 0.0799326195962815 0.073446082417357 0.0714248425172561 0.0767528736099385 0.0718082056633427 0.0712544157007484 0.0698898177505464 0.0698898177505464 0.0753771638206633 0.0717339157055406 0.0698898177505464 0.080138852837068 0.0716576930661205 0.0706783858977048 2 0|2 /|- 13026403 13026609 13026501.7 13025520 13027271 - gene protein_coding_gene FALSE TRUE AT2G30570.1|AT2G30570.2 photosystem II reaction center W (PsbW) protein-related Encodes a protein similar to photosystem II reaction center subunit W. Identical to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (PSBW) [Arabidopsis Thaliana] (GB:Q39194;GB:O04338); similar to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (GB:Q41387); contains InterPro domain Photosystem II protein PsbW, class 2; (InterPro:IPR009806) 0.0995603746748537 1.17912326079390 0.263489015522539 1 0.0494771702255125 27.2896849085354 0.0995603746748537 0.0391461601346892
AT1G11680_at 9.18204550037593 9.29046010208924 9.09987649729252 9.21010279345217 9.43097012957177 9.20799013068625 9.49581744165155 9.6351741157198 9.48912960861742 9.46367239771147 9.54077515675434 9.45985533185473 9.44500388401438 9.47325880831063 9.50554183960326 9.42856427746354 9.01334510765768 9.50215728645837 9.4356669440839 0.0879821225149897 0.0863409332011374 0.0919368305817075 0.0831784996909854 0.0850827885256537 0.0916640785094597 0.084868773672646 0.085028689275429 0.0918982953283502 0.0835680688574997 0.0838069011449869 0.083047478559309 0.0881813877327382 0.0828884385971308 0.0868833617424378 0.0828884385971308 0.0937500497326157 0.0840614764117547 0.0871808164872396 1 1 + 3940015 3940560 3940304.545 3938501 3940754 + gene protein_coding_gene FALSE TRUE AT1G11680.1 CYP51G1 (CYTOCHROME P450 51); oxygen binding putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340.1); similar to obtusifoliol-14-demethylase [Petunia x hybrida] (GB:CAL69911.1); similar to cytochrome P450 monooxygenase CYP51G1 [Medicago truncatula] (GB:ABC59074.1); similar to obtusifoliol 14alpha-demethylase [Solanum chacoense] (GB:AAT12274.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) -0.102699837082381 -1.17879055981693 0.263616038536162 1 0.0491281316371935 18.7609974363477 -0.102699837082381 0.052787041065545
AT2G40800_at 3.30827375955496 3.47427442173533 2.83640900809298 2.50486352555678 3.41353713835976 2.62176478831591 3.69311159518001 3.86326072485767 3.48265307280227 3.33154373049898 3.73054791062150 4.24315382716932 3.30853973669484 4.10662887336481 3.67243737826216 3.59332070032644 3.30466410522591 3.86969622486166 3.02474874848118 0.206022709719424 0.206022709719424 0.215514542496450 0.221169040979886 0.206022709719424 0.207571696355814 0.20965875486812 0.210858142468751 0.211277381015639 0.213262923367298 0.218329152993497 0.20661083092462 0.206022709719424 0.209838953171362 0.209169056836387 0.211646786520584 0.213244542662637 0.207393929836873 0.211429781172739 2 2|0 -|/ 17031864 17033275 17032465.5 17031469 17034051 - gene protein_coding_gene FALSE TRUE AT2G40800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56430.1); similar to Os01g0168300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042128.1); contains InterPro domain Mitochondrial TIM21; (InterPro:IPR013261) -0.145805716472808 -1.17876960376976 0.263624041030193 1 0.0491061490126703 6.71857292612 -0.145805716472808 0.154138459855741
AT2G24430_at 2.12118617534548 2.20303870404105 2.21319000189086 2.448593016527 2.32258031776952 2.56327798937722 1.94973209716825 2.37275246857812 2.59664358705318 2.99200694909143 2.46660161493813 2.19556824050917 2.45755649756597 2.38030661293051 2.68051421897649 2.72990883734702 2.91128368724822 2.84997984754808 2.13684919046144 0.241818324784511 0.232051334137071 0.233906272977143 0.231275044327833 0.238981433372661 0.229645084929185 0.226629218091463 0.238007489834965 0.240858774532864 0.22930774322769 0.237170695662153 0.233843583469167 0.230028976833285 0.237359247465388 0.242935326614579 0.231843782504604 0.250796141018247 0.226629218091463 0.226629218091463 2 2|0 -|/ 10390679 10391280 10390880.2 10390597 10393705 - gene protein_coding_gene FALSE TRUE AT2G24430.1|AT2G24430.2 no apical meristem (NAM) family protein similar to ANAC058 (Arabidopsis NAC domain containing protein 58), transcription factor [Arabidopsis thaliana] (TAIR:AT3G18400.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE93368.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.117015669602764 1.17856756153542 0.263701204797224 1 0.0488942244421081 4.85385960642134 0.117015669602764 0.0946272047331717
AT1G48240_at 5.1223430280438 5.06300827166015 6.06097244571017 5.16245009604627 6.25889730865334 5.96913657136098 6.75101519177521 6.30232511862231 6.53121254269097 6.50210586549471 7.48512732602915 6.70573642049352 7.04702934623592 7.25357077160842 7.03535510715754 6.53318159649654 6.88925904294655 7.02072020644076 7.14972376529573 0.229716170013942 0.220819615038237 0.208265127981695 0.210487661900058 0.207990003272201 0.233271972776001 0.213661196458874 0.211144497881610 0.213121494615486 0.220950474207273 0.212944031917558 0.213911342609930 0.208291294992986 0.216487770743702 0.207806558118602 0.210764857964143 0.219254590365529 0.211507771718338 0.216213885704391 1 0|1 /|- 17812931 17814065 17813396.375 17812675 17815563 - gene protein_coding_gene FALSE TRUE AT1G48240.1 ATNPSN12 (novel plant SNARE 12); protein transporter member of NPSN Gene Family Identical to Novel plant SNARE 12 (AtNPSN12) (NPSN12) [Arabidopsis Thaliana] (GB:Q9LNH6;GB:Q9SX59); similar to NPSN13 (novel plant SNARE 13) [Arabidopsis thaliana] (TAIR:AT3G17440.1); similar to Os07g0637400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060402.1); similar to SNARE 13 [Oryza sativa (japonica cultivar-group)] (GB:AAU94637.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.160878977799784 1.17855429509191 0.263706272126516 1 0.048880310067168 12.6982326048190 0.160878977799784 0.181183116732957
AT3G02530_at 7.57642422475652 8.22979427713836 7.29525348846244 7.70789758893476 7.92052819426288 7.65937760627871 7.89967354934197 8.13100721829997 7.43635708185876 7.54140986426561 7.56884631373251 7.59672981632525 7.57734792405349 7.31773300871306 7.84285232129348 7.33837425051655 7.38816180092925 7.31460283333798 7.4119993272603 0.161106966325071 0.160736998330439 0.16866374188609 0.166076851953515 0.162424314576282 0.165169548548660 0.165824900542246 0.166252872011370 0.175436423607457 0.162167953907057 0.163015471076852 0.159953698180217 0.169905622013099 0.179408812973861 0.158974571092341 0.158974571092341 0.170458828079610 0.170263766700990 0.163582400007608 3 3 - 528862 529867 529325.636 528581 532589 - gene protein_coding_gene FALSE TRUE AT3G02530.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT5G16070.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96914.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus tauri] (GB:CAL56563.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96959.1); contains InterPro domain T-complex protein 1, zeta subunit; (InterPro:IPR012722); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844) -0.141817494374185 -1.17852858096477 0.263716094265196 1 0.0488533404021457 15.2806627474716 -0.141817494374185 0.146727749435783
AT1G76530_at 4.30376714937874 3.95999617513894 3.63185534769537 3.37722809858458 4.1485192301523 3.62893198729323 2.91276472958041 2.29536669234290 2.22213302287371 2.75258429893009 1.42770768245159 1.71904128718108 2.6483478154215 2.14897697260945 1.65526120068908 2.89802556991673 2.91184769922153 1.81808906059592 3.35867459082194 0.25521835904849 0.255878722169017 0.249455766159880 0.244675028635194 0.249808150086209 0.252585311519079 0.253294417536096 0.243564623966447 0.244202452558696 0.247403486019074 0.260314907483109 0.250741048687156 0.250992143312689 0.248459560850949 0.254680460762477 0.241543457902847 0.241543457902847 0.260824547642637 0.248558055775884 1 1|0 +|/ 28724379 28725115 28724743.778 28723273 28725265 + gene protein_coding_gene FALSE TRUE AT1G76530.1 auxin efflux carrier family protein similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT1G76520.2); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE88820.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.147862581938300 -1.17821530399009 0.263835781201641 1 0.0485248028166918 5.99790840888053 -0.147862581938300 0.158055359479630
AT3G47700_at 4.53802706226057 4.75561867338577 4.39063896949604 4.25076024505711 4.8280269511959 4.25952611468789 4.87349329462816 4.50416687591764 4.95013190780944 4.63232371958395 4.63592317931037 4.90292618474089 4.78802230354155 5.0462866081256 4.59568017900865 4.46131477247613 4.56402254466172 4.78548038937994 4.66410373226509 0.226861606633844 0.229643743309627 0.221643850933691 0.218566364156604 0.2183549197984 0.227320972170174 0.216000212937122 0.221428059889520 0.217659546448119 0.229096466210379 0.221762369805016 0.217352819677358 0.224345180872692 0.216000212937122 0.221354126146932 0.222994031761376 0.231744519982541 0.222761896571322 0.224611062195050 3 3 - 17594822 17595327 17595066.455 17594586 17597609 - gene protein_coding_gene FALSE TRUE AT3G47700.1 MAG2 Involved in transportation of seed storage proteins from the ER to the vacuole. Mutant seed cell accumulates the precursors of 12S globulin and 2S albumin instead of the vacuolar-located mature proteins. similar to chromosome structural maintenance protein-related [Arabidopsis thaliana] (TAIR:AT1G08400.1); similar to Os02g0748100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048119.1); similar to Os07g0686700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060686.1); similar to PREDICTED: similar to RAD50-interacting protein 1 [Gallus gallus] (GB:XP_425422.2); contains InterPro domain RINT-1/TIP-1; (InterPro:IPR007528) -0.130992253084676 -1.17812893083016 0.263868787445167 1 0.0484342337779867 9.28568734334952 -0.130992253084676 0.125569896410673
AT4G13650_at 1.19131930441072 1.44136732454281 1.41687637507058 1.16836000240975 1.48527561437021 1.03987831224278 1.36963248214984 1.45346610970230 1.47301740005368 1.90060247823582 1.43718036839457 1.80176853428132 1.79423957289463 1.25180448612378 1.60237633198590 1.59106118079289 1.85500904030864 1.49538475432132 1.89160876829644 0.210556612108727 0.210170894736686 0.208105339234787 0.211557838888472 0.214969076915158 0.22036480427198 0.207016291753031 0.212267719935096 0.213880898045995 0.215005449633005 0.210239809214022 0.212797563090749 0.216090030326830 0.211296429087662 0.206260528223572 0.211746983026066 0.212611990517254 0.212126857390799 0.210981554093965 4 4 - 7939711 7940138 7939910.364 7938963 7942894 - gene protein_coding_gene FALSE TRUE AT4G13650.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G09950.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99524.2); similar to PPR1106-17 [Physcomitrella patens] (GB:BAD67156.2); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.118910955534429 -1.17764179080682 0.264055001808906 1 0.0479235231508005 3.00011156519564 -0.118910955534429 0.0993658170231702
AT2G47600_at 8.25505189309837 8.3297637546793 8.15118838605633 8.02566847408323 8.29516464111416 8.2583936327146 8.54113002001509 8.63563610073007 7.89395010206123 7.93191446590513 8.15179527662898 7.93877356894234 8.17154627171567 8.05601717740227 8.18028854863498 7.89401978200946 7.82218346532056 8.25305618123639 8.16367147872297 0.161596760502698 0.15365317072467 0.150210834348667 0.157942283587388 0.151070338684133 0.167509387697007 0.157541467176158 0.161887843801438 0.163510117820146 0.159469601560752 0.158372940140044 0.159162359801395 0.153432169157061 0.163699565653783 0.155266019436223 0.16355999522608 0.17051361065697 0.170687113311318 0.160749096133439 2 2|0 -|/ 19531626 19532315 19531939.3 19531230 19534483 - gene protein_coding_gene FALSE TRUE AT2G47600.1 ATMHX (MAGNESIUM/PROTON EXCHANGER); cation:cation antiporter Encodes a magnesium/proton exchanger, member of putative Na+/Ca2+ antiporter gene family similar to Os11g0660000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068402.1); similar to Sodium/calcium exchanger membrane re (GB:ABE84975.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) -0.0979218201077012 -1.17762816702406 0.264060211129671 1 0.0479092424659808 16.3389856375861 -0.0979218201077012 0.0307729036698286
AT1G74100_at 10.3636358627354 10.9388094108304 10.5776080677026 10.8942888358236 10.3827347936078 9.83989090006621 10.3732935199995 10.8107783154749 9.4543561281996 9.72182295398627 10.2204199643012 10.5109786699258 10.1660797704705 10.1193867408993 9.50786770561777 9.95027579237673 9.2953107440957 10.2714430576850 9.33356447265103 0.154117887025074 0.152464124406525 0.152599060335758 0.158483511629783 0.152990373438349 0.148223759363846 0.153354210164333 0.152852898665945 0.162210365842036 0.152475816384261 0.151858771292469 0.150271170950261 0.153329531037723 0.15990643937702 0.157509302805221 0.14856265896789 0.165663725681117 0.149143372412046 0.161419451997459 1 1 - 27868155 27868724 27868431.182 27868006 27869355 - gene protein_coding_gene FALSE TRUE AT1G74100.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74090.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.151986913049596 1.17739799552856 0.264148233955258 1 0.0476679915934146 20.2768640419220 0.151986913049596 0.165733951751551
AT4G10260_at 0.459970287978277 0.510476852712463 0.906771967297427 1.06292180017105 0.712944273738468 0.98505969185389 0.676838428000587 0.824101411265742 0.657450666112978 1.19262160409597 0.616386906912119 0.550624481989023 0.682380042822066 0.85004033191299 0.82701027014287 0.821991026592002 0.763112265814837 0.763293653257495 0.621697476988824 0.225656012686555 0.225757307048051 0.227937627989912 0.234910021326794 0.225656012686555 0.230868130162272 0.225656012686555 0.225656012686555 0.227523228776413 0.235546218166801 0.235130138758667 0.229514974233813 0.233311120966138 0.225656012686555 0.22887752114336 0.232909166630970 0.228502099635162 0.243981845251413 0.232412176396616 4 4|0 -|/ 6371505 6372262 6371955.9 6371482 6372766 - gene protein_coding_gene FALSE TRUE AT4G10260.1 pfkB-type carbohydrate kinase family protein Identical to Putative fructokinase-5 (EC 2.7.1.4) [Arabidopsis Thaliana] (GB:O82616); similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G59480.1); similar to Fructokinase-2 (ZmFRK2) (GB:Q6XZ78); similar to Os08g0113100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060837.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.104754655820222 1.17734938923024 0.264166825066356 1 0.0476170501730895 1.54652464987541 0.104754655820222 0.060610372153779
AT1G37000_at 0.462489434615891 0.385562597908559 0.969675994501224 1.06800464769052 0.57251300653702 0.666431964568973 0.756883284180597 0.414159548093698 0.410886592549238 0.741290962838006 0.460032055405039 0.620963453639159 0.499293225839965 0.513531889395091 0.487336326131348 0.591832716369792 1.38922239840807 0.180245862228411 0.932628446110026 0.220713191933112 0.215780359725609 0.219443723313195 0.215967925516070 0.212414275107798 0.215330424869802 0.213917959405219 0.214292808706920 0.223296743747752 0.221999677460205 0.215049639841369 0.209511317511071 0.228422023669770 0.2258247612126 0.211865922922765 0.212981443811196 0.215816658005476 0.221173656988072 0.211475354064283 1 1|0 +|/ 14038541 14039509 14039214.4 14038479 14039586 + gene protein_coding_gene FALSE TRUE AT1G37000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29200.1); contains domain SUBFAMILY NOT NAMED (PTHR23421:SF5); contains domain BETA-GALACTOSIDASE RELATED (PTHR23421) 0.106127297109717 1.17716501152317 0.264237355880381 1 0.0474238291241347 1.30583634714183 0.106127297109717 0.0651813537828054
ATCG00420_at 10.4111793922327 11.4056388426182 10.7181006646567 11.0490998684820 10.3908057758176 10.1357330864263 11.2011725689112 11.3012521408960 11.3843869092128 11.8759153978155 12.0810029029184 12.3683416129836 11.7183548825912 11.6469789419935 11.6378141480892 12.0189176460014 11.5456910216062 11.3167982929077 11.5812820603533 0.0938594017712327 0.0938594017712327 0.0947923534441564 0.095525821657499 0.09401363962886 0.110728882772015 0.0943749898674923 0.0957220960994255 0.102017216158994 0.0938594017712327 0.095475737410314 0.0951954981559853 0.0944242910829064 0.097962214845709 0.09521008062588 0.0954697724662372 0.101007653868648 0.100117439492611 0.0938594017712327 C C - 48704 49106 48896.6 48677 49153 - gene protein_coding_gene FALSE TRUE ATCG00420.1 Encodes NADH dehydrogenase subunit J. Its transcription is increased upon sulfur depletion. Identical to NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) (ndhJ) [Arabidopsis Thaliana] (GB:P56754); similar to NADH dehydrogenase subunit J [Raphanus raphanistrum] (GB:BAE46913.1); contains InterPro domain NADH dehydrogenase (ubiquinone), 30 kDa subunit; (InterPro:IPR001268); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) -0.164249955988165 -1.176632660858 0.264441081537746 1 0.046866073589831 22.5294222359702 -0.164249955988165 0.187474045380388
AT1G43730_at 1.02292524864789 0.605199084871309 0.227776421073844 0.581970983750775 0.88988731401951 0.47618214080391 0.91851251469092 0.706441564292864 0.572931219473506 0.899766155449919 0.896460684950499 0.463285301987817 0.587307438863849 1.05085029046485 0.588175571239588 0.547201301366306 1.22946372267561 0.241165385349125 0.60163161226639 0.190201519012088 0.190201519012088 0.193599008109727 0.195645571478947 0.190201519012088 0.194957439833407 0.193175443342653 0.196573494206426 0.197057057284862 0.197008943841231 0.190201519012088 0.190627502846212 0.199015409931276 0.193061939310587 0.201782201743789 0.194215895977845 0.209621523677395 0.198240127596700 0.197704297809325 1 1 - 16511234 16511719 16511465.182 16511163 16512224 - gene protein_coding_gene FALSE TRUE AT1G43730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04650.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.130134835915735 -1.17589237217343 0.264724588677275 1 0.0460907738677009 1.37457776293995 -0.130134835915735 0.124319632112077
AT4G16350_at 1.69319954240437 2.04361252225313 1.46264501733063 1.64785856411956 1.63993214010584 1.33469882527212 1.57638775292295 1.82351335838850 1.05675736941224 1.20433747001169 0.88871906957761 1.33717563285492 1.55661159381366 0.873914961935584 0.802217473994171 1.46556586740497 1.19336774015326 1.42031851028319 1.23214332123026 0.198514335296541 0.202690167895104 0.200813797076626 0.198297995892016 0.205071299396065 0.207923714439164 0.200211213148396 0.198483226201911 0.220397890132255 0.200576458076639 0.196147999153482 0.197011666314954 0.199797954561314 0.197803997695552 0.200385570696098 0.196147999153482 0.210921204350134 0.202965603757812 0.196147999153482 4 0|4 /|- 9242528 9243452 9242899.429 9242337 9243929 - gene protein_coding_gene FALSE TRUE AT4G16350.1 CBL6 (CALCINEURIN B-LIKE PROTEIN 6) Calcium sensor protein. Binds CIPK14. Identical to Calcineurin B-like protein 6 (SOS3-like calcium-binding protein 2) (CBL6) [Arabidopsis Thaliana] (GB:Q9C5P6;GB:O23480;GB:Q9FVF2); similar to CBL2 (calcineurin B-like protein 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G55990.1); similar to calcineurin B-like protein 3 [Populus euphratica] (GB:ABJ09706.1); similar to Os03g0626800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050704.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.117535510625549 -1.17573230474793 0.264785920883739 1 0.0459231847689289 2.83105550358475 -0.117535510625549 0.0965595022565935
AT1G26320_at 2.37383361464289 2.37112348932801 2.98253644297461 2.35420653489453 2.02180759604702 2.56967183417151 1.87508594693197 2.0593644134754 2.04582841637019 2.50228237708941 2.05563680976559 1.85930602819766 2.34076074259575 2.29036303578741 2.10240056138323 2.14923983887012 2.34959401377257 2.80692159958147 2.26929379561459 0.196213319962565 0.208488179240081 0.200675317983717 0.206764898264040 0.195608355941793 0.192891574733815 0.193017808391604 0.192891574733815 0.199795940220534 0.202056490629967 0.207503719155967 0.194952982744962 0.20298189192697 0.204269387275807 0.204123655141921 0.196768615885716 0.199499959982187 0.196926869538748 0.197771963125108 1 1 + 9106275 9106991 9106726.273 9105195 9107176 + gene protein_coding_gene FALSE TRUE AT1G26320.1 NADP-dependent oxidoreductase, putative similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT3G03080.1); similar to allyl alcohol dehydrogenase [Nicotiana tabacum] (GB:BAA89423.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149) 0.142006684156755 1.17562370403886 0.264827539222855 1 0.0458094906663533 4.58432674660939 0.142006684156755 0.147748513637884
AT1G56190_at 10.5437551159775 10.5544695596803 10.5486390620020 10.4963552405339 9.94162940676593 9.9106478677818 10.6435893267421 10.8481159822142 11.2135115892076 11.0270784350890 11.1561334078928 11.4471804710738 10.9554854390510 11.2422445886540 11.4807233125184 11.6597963363778 10.8541867136997 11.4681870851107 10.9318787120338 0.0657198403269244 0.0623972739118864 0.0679762115213136 0.0660542383019853 0.0637009859144529 0.0676561801521523 0.0643203709107973 0.0625818761359905 0.0669476741810179 0.064802285973974 0.0633350304028115 0.0630604939104197 0.0629758060096714 0.0629639269450926 0.0640256021893092 0.0623449294618689 0.067271659922569 0.0640906286856107 0.0643583119068772 1 1|0 +|/ 21033341 21034077 21033736.8 21031903 21034314 + gene protein_coding_gene FALSE TRUE AT1G56190.1 phosphoglycerate kinase, putative similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576) -0.0988310056810628 -1.17551508028104 0.264869171544756 1 0.0456957803801702 21.6061410692493 -0.0988310056810628 0.0369703276025500
AT3G62750_at 9.03914947355275 9.12135665498709 8.7528605307466 8.6201855479872 9.82122998435591 8.73313094873181 9.67528944934299 9.27517245933531 9.11378480684493 10.2144267955469 10.1267034620632 10.0403603077580 9.73939550243022 10.1854927044146 9.75014117516107 9.74206257186422 9.22812788193272 9.58418861830647 10.2201160725305 0.199844472257717 0.198641031706486 0.221145212949284 0.213507798273332 0.187623268435099 0.205656954630151 0.199423947770538 0.192356989762485 0.197280203604641 0.187392768570773 0.187392768570773 0.187392768570773 0.187392768570773 0.194810630180514 0.187392768570773 0.197263622004179 0.222985472335431 0.199307471001161 0.190765556464963 3 3 + 23226951 23227731 23227257.167 23225347 23228021 + gene protein_coding_gene FALSE TRUE AT3G62750.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27820.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G62740.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.172886893332637 -1.17549952895553 0.264875132336269 1 0.0456795014825632 18.9542976742793 -0.172886893332637 0.202437995719571
AT1G52530_at 2.83839265921468 2.78953285740645 2.94266722747577 2.75453738787120 2.91071066970394 3.09699474259055 3.1744683751528 2.81084195612582 3.13383539966962 2.67441687062011 3.11775255244007 3.09507675399091 2.77877325144656 3.13225492108656 3.29246436953923 2.99241047542879 2.99264132660684 3.4346835766016 2.91166344999275 0.248491739064198 0.245072988709864 0.265456736951997 0.250187209855818 0.245464980093911 0.247811722373984 0.241066830160928 0.244468641303844 0.253600786406770 0.246081488138185 0.241128353066690 0.251262697653051 0.247718904215695 0.241873065987015 0.247124397754617 0.249040594006119 0.246343123463103 0.246464261073231 0.245658851599291 1 1 + 19573083 19573648 19573428.273 19572257 19573727 + gene protein_coding_gene FALSE TRUE AT1G52530.1 similar to Hus1-like protein [Medicago truncatula] (GB:ABE90135.1); contains InterPro domain Hus1-like protein; (InterPro:IPR007150) 0.110393562450253 1.17548238718552 0.264881702864252 1 0.0456615579199215 5.92034109785268 0.110393562450253 0.0782976345942316
AT2G45580_at 1.75844061823504 2.27683898473154 2.21204559604061 2.15737465607297 1.94959674953457 2.20461074291792 1.94671236726843 2.03068561737274 2.07921502751965 2.10004489416225 2.15756183560723 2.40241394885823 2.42491571101061 2.04226648369066 1.94391098068866 1.89654343047015 1.95017447039121 2.60952325762851 2.02167477120739 0.207354815266342 0.201323132425797 0.209954180064088 0.202322847037578 0.208597108998961 0.206077308545708 0.211887713852010 0.210246129933114 0.206785920778879 0.207104379677065 0.202288096619387 0.204046759782436 0.208092489725742 0.203575003277071 0.204527987561913 0.201323132425797 0.214770596294939 0.204089300838978 0.204002676942781 2 2 - 18789465 18790020 18789692.636 18789399 18791421 - gene protein_coding_gene FALSE TRUE AT2G45580.1 CYP76C3 (cytochrome P450, family 76, subfamily C, polypeptide 3); oxygen binding member of CYP76C Identical to Cytochrome P450 76C3 (EC 1.14.-.-) (CYP76C3) [Arabidopsis Thaliana] (GB:O64638;GB:Q8GXM0); similar to CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45550.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.119586536534821 1.17540706424538 0.264910576052092 1 0.0455827141549633 4.18973416439985 0.119586536534821 0.101471059459427
AT1G77570_at 2.14186483179431 2.18789284010307 2.14506589446961 2.74789045466748 2.54896123271505 2.51654741408417 2.06409199651657 2.33581509320319 2.64091036230524 2.07181983319818 2.28846362181444 1.90516629776936 2.40964435226712 2.04519501771216 2.15796107007629 2.40953090685609 2.05435547784907 2.18150550616679 1.99986202605854 0.187791003364334 0.184992336899645 0.186600705656708 0.185328872888943 0.1900507683928 0.183791334173275 0.183056391291989 0.183955560323672 0.190451990365872 0.180831714412772 0.181879379316017 0.184528192718238 0.183299755749153 0.189357159369816 0.180203267918233 0.185361089356426 0.196925123893686 0.191787287664641 0.191208677619557 1 1 + 29148328 29148662 29148451 29148244 29148897 + gene protein_coding_gene FALSE TRUE AT1G77570.1 DNA binding / transcription factor similar to AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G13980.1); similar to Os03g0854500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051938.1); similar to heat shock transcription factor 1 [Medicago sativa] (GB:ABJ09073.1); similar to heat shock transcription factor 1 variant c [Medicago sativa] (GB:ABJ09074.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.125573549686528 1.17535607146362 0.264930124280908 1 0.0455293399839373 4.54552048061146 0.125573549686528 0.114843659984489
AT3G20140_at 2.21965940041057 2.22008109893863 2.32199636545871 2.35789834766672 1.70020683244272 1.80103666613678 2.16196157303720 2.19061223981389 2.69676484462286 2.1875100821997 2.31312207673728 2.05775991759335 2.11595096704895 2.47259692329945 2.25163871031260 2.29459810984630 2.66159008519335 2.28752365955269 2.15517234703642 0.215570664229557 0.213652932043443 0.214100447090819 0.218361847807370 0.214978302938808 0.225559448413050 0.224908224964471 0.218549568095997 0.220038711706444 0.226051690649555 0.219946434224004 0.217945438718524 0.224535072095357 0.218254401966982 0.214770647317582 0.214431332372488 0.218350319616662 0.230633885724277 0.216257766383396 3 3 + 7030194 7030750 7030506.182 7029181 7030793 + gene protein_coding_gene FALSE TRUE AT3G20140.1 CYP705A23 (cytochrome P450, family 705, subfamily A, polypeptide 23); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20100.1); similar to CYP705A15 (cytochrome P450, family 705, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20080.2); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94648.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.096214446772753 -1.17533690227521 0.264937473137722 1 0.0455092760375349 4.44834655589698 -0.096214446772753 0.0191744616120359
AT2G22560_at 2.41957817763639 2.86454987114086 2.03429469659876 2.12601811560061 2.19060605954423 2.20944163705810 2.22954490067038 1.99705125041171 1.85335425268418 2.27098454771716 2.0923407826352 2.43415769971095 1.90821615522837 2.08214812213124 1.94822048947519 2.04659231364155 2.22094572225279 2.18560853808451 2.19224615964028 0.193154384064212 0.186359709751741 0.185240015488019 0.188319786953086 0.186718272381608 0.189684593828009 0.189267889068131 0.193114535926799 0.190783886422244 0.190742122656861 0.18796302358828 0.188323645337056 0.19716829933347 0.185450237513366 0.207393118110194 0.188994722904687 0.185240015488019 0.187303201703187 0.190128809972936 2 2 + 9595389 9595874 9595644.364 9593243 9595918 + gene protein_coding_gene FALSE TRUE AT2G22560.1 kinase interacting protein-related similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT5G10500.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84476.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.114170257441653 -1.17523401704338 0.264976918802706 1 0.0454015926734298 4.36903911253705 -0.114170257441653 0.0883801316439724
AT4G31530_at 9.2806741995805 9.28276223475937 9.2141868783762 9.1266974026172 9.21843971325131 9.02434753472012 9.70148058366245 9.74243647030657 9.6011795373149 9.7029055275099 9.85628430300457 9.71674015942367 9.64609297301354 9.84148011651997 9.98017917058835 9.97225968771316 9.46949659499732 9.73269153438037 9.55231528652755 0.102373734913485 0.103887639772544 0.101055342589007 0.0970111410644274 0.100791637700010 0.110749525471205 0.107415727498513 0.102287716042799 0.114572274050548 0.103582658543013 0.103498891042877 0.101120333772307 0.103853612411065 0.104439618274662 0.100365435445496 0.09881414792052 0.106591859179294 0.110013599071103 0.103673223803496 4 4|0 +|/ 15282861 15284008 15283363.333 15282236 15284222 + gene protein_coding_gene FALSE TRUE AT4G31530.1 catalytic/ coenzyme binding similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT2G37660.1); similar to Male sterility-like [Trichodesmium erythraeum IMS101] (GB:YP_724032.1); similar to Os03g0355900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050138.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0989087697491748 -1.17518826326278 0.264994462049795 1 0.0453537074207656 19.0217297194455 -0.0989087697491748 0.0375205206627533
AT1G62760_at 1.76563307715117 2.01375301474439 1.66691156268323 2.02423880802201 1.61565829277362 2.34289889108432 0.947488930617735 1.65109592026869 1.73352705906153 1.48639100968236 1.81964072393394 1.96761264492616 1.56835149255528 1.51554087657512 1.98408426451646 1.47297700717062 1.68127537559895 1.69491860648006 1.87836354040942 0.195690923294693 0.197741830335341 0.192949160755067 0.193457983638629 0.201892341131467 0.191019828558712 0.197375722410683 0.194585839978704 0.191019828558712 0.205078478766027 0.194224175303205 0.200067372419402 0.191256961640888 0.200107641368846 0.191019828558712 0.191019828558712 0.197253535632257 0.194334443616075 0.199499459004207 1 1 - 23241251 23241697 23241456.545 23241239 23242177 - gene protein_coding_gene FALSE TRUE AT1G62760.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT4G25260.1); similar to pectin methylesterase inhibitor isoform [Solanum phureja] (GB:ABG49144.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.165778536931886 1.17451704517517 0.265251930435255 1 0.0446513823034966 3.45969847567848 0.165778536931886 0.190610733039954
AT2G21160_at 10.0325063249435 10.173242243049 9.84076092745298 9.8822506105516 9.841607609835 9.53549344185368 10.1615365968458 10.1724867885904 9.65508935979002 9.72522989598358 10.0109575328663 10.1803481566541 9.787226755865 9.73251353298199 10.0619748472182 9.51922815808248 9.32719338361015 9.62609895207631 9.5056742706819 0.0770308498809126 0.0765103312745461 0.0789788156261335 0.0775967149650222 0.079934150583569 0.0791088310108497 0.076822762499062 0.0758044618297542 0.0885996065198429 0.0778185159404077 0.0780561389077708 0.07570992837556 0.0772623602199136 0.0799677595093007 0.0838396359060866 0.07570992837556 0.0930482300477848 0.0804461321943786 0.0791515898457751 2 2|0 +|/ 9076154 9077103 9076752 9075399 9077512 + gene protein_coding_gene FALSE TRUE AT2G21160.1|AT2G21160.2 translocon-associated protein alpha (TRAP alpha) family protein Identical to Translocon-associated protein subunit alpha precursor (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha) [Arabidopsis Thaliana] (GB:P45434;GB:Q94A59;GB:Q9SKP7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16595.1); similar to alpha-subunit; putative (GB:AAA21820.1); contains InterPro domain Translocon-associated protein (TRAP), alpha subunit; (InterPro:IPR005595)|Identical to Translocon-associated protein subunit alpha precursor (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha) [Arabidopsis Thaliana] (GB:P45434;GB:Q94A59;GB:Q9SKP7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16595.1); similar to alpha-subunit; putative (GB:AAA21820.1); contains domain TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT (PTHR12924); contains domain Ribosomal protein L30p/L7e (SSF55129) -0.103943342416510 -1.17421705169807 0.265367066694558 1 0.0443375840697297 19.6596641547591 -0.103943342416510 0.0587758919972532
AT2G25080_at 12.6841987052206 12.7285838233492 13.052986971687 13.0410837263712 13.2724460307830 12.9595092534862 13.2645677058144 13.1730293845792 13.6243220065952 13.5510189763640 13.7903938360308 13.4793113960821 13.7194006254831 13.7957891377411 13.2742247886768 13.6885364270818 13.5131500140519 13.6540437705842 13.4042288165449 0.0752549306091718 0.0712066037875702 0.0768169641487161 0.0702857265123057 0.0716578519256752 0.0769038310063573 0.0787683191784477 0.0766876278098714 0.0717314149853164 0.0702857265123057 0.0720592532637084 0.0734600943338722 0.074468600090494 0.071608696400229 0.0721211159002441 0.0714880953206459 0.0749211435462702 0.070684945162918 0.0702857265123057 2 2|0 +|/ 10675355 10676880 10676173.556 10675137 10677098 + gene protein_coding_gene FALSE TRUE AT2G25080.1 ATGPX1 (GLUTATHIONE PEROXIDASE 1); glutathione peroxidase Encodes glutathione peroxidase. Identical to Phospholipid hydroperoxide glutathione peroxidase 1, chloroplast precursor (EC 1.11.1.12) (PHGPx) (GPX1) [Arabidopsis Thaliana] (GB:P52032;GB:O19985;GB:O81717); similar to ATGPX7 (GLUTATHIONE PEROXIDASE 7), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G31870.1); similar to glutathione peroxidase [Brassica napus] (GB:AAM12502.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.103372286903046 1.17349546051814 0.265644171425334 1 0.0435830360493873 26.5924904581453 0.103372286903046 0.056982151655455
AT1G18220_at 1.64448716453229 1.84733510617133 1.3398055788112 1.58505569730343 1.49872175328265 1.90627649675407 1.45804878405965 1.92741145257601 2.19127954026476 1.87316776377844 1.81760242372027 1.66461610020313 1.81058904116303 2.07823362093362 1.76132895963804 1.60561806529249 1.95036058715728 1.65989183562847 1.67452350686354 0.182764768104666 0.184154102230447 0.182917586105872 0.180795736675914 0.179706068527216 0.183345779631942 0.183822203115486 0.180015877789619 0.179165137104066 0.184533291465452 0.182074455253826 0.183615468979215 0.187255175405623 0.184852220044724 0.181081378301151 0.178359282211146 0.182240823917911 0.188833882779932 0.178359282211146 1 1 - 6269663 6269774 6269724.2 6269663 6269800 - gene protein_coding_gene FALSE TRUE AT1G18220.1 ATPUP9 (Arabidopsis thaliana purine permease 9) Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. -0.128157968191093 -1.17308785695395 0.265800799496297 1 0.0431569714477554 3.50415292894598 -0.128157968191093 0.120853265809945
AT1G30880_at 9.21564330141594 9.53433766744745 9.01228169644955 9.18281733083043 9.71085764926134 9.6196661655041 8.95105974035894 8.84454775202097 9.36753396602458 9.10154149887981 9.16824140085548 8.90967399496528 9.1277059481937 8.88135622832898 8.86528134911932 8.89995131993417 8.83335094344589 8.74072279593175 9.68891824066539 0.133657035128901 0.135314121093804 0.131373825047364 0.132108106489669 0.13652765992582 0.138074727660115 0.133677960930561 0.131114310152363 0.146976862161905 0.12724519434774 0.130350525114919 0.133417777430378 0.131523476183421 0.133329042302582 0.130406653469664 0.130149821649029 0.136132934093380 0.140395343856048 0.126766023239802 1 1 - 10993366 10993947 10993660.545 10993176 10994106 - gene protein_coding_gene FALSE TRUE AT1G30880.1 similar to Os04g0611300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053837.1); similar to OSJNBa0085I10.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE03572.2) -0.106351904529621 -1.17296877025834 0.265846574134868 1 0.0430325122775854 18.4160431126378 -0.106351904529621 0.0670928249022134
AT1G47870_at 4.53558538633817 4.5596196396182 4.75888254243437 4.8172096954551 4.23302806807914 4.21808607564282 4.13513344167725 4.61549455409444 3.45259744307324 3.89402086670607 4.2083676204046 4.0052091875106 3.94140311651744 3.94657402029093 4.14356017240339 3.9425364636313 3.75560572673621 3.64117414844143 3.9602829732381 0.223388248443564 0.222919859393569 0.230398936771603 0.228419239347865 0.227409543335766 0.238086618001538 0.222919859393569 0.225869256545547 0.222919859393569 0.231296184578493 0.22592205022758 0.228626393905157 0.234426826517746 0.225193239816287 0.238502187451103 0.229614355918817 0.234692032367305 0.228627428238591 0.225785844236898 1 0|1 /|+ 17639145 17639958 17639573.75 17637228 17640210 + gene protein_coding_gene FALSE TRUE AT1G47870.1 E2FC (ARABIDOPSIS HOMOLOG OF E2F C); transcription factor Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. AtE2Fc is regulated by a balance between gene expression and ubiquitin-proteasome proteolysis. AtE2Fc might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. similar to E2F1, transcription factor [Arabidopsis thaliana] (TAIR:AT5G22220.3); similar to E2F-related transcription factor 2 [Thlaspi caerulescens] (GB:AAM90621.1); contains InterPro domain Transcription factor E2F/dimerisation partner (TDP); (InterPro:IPR003316); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.112215026311845 1.17294253800935 0.265856658140608 1 0.0430050978735892 8.342640376083 0.112215026311845 0.0838823935058712
AT4G18240_at 9.88752065587299 9.74134984656075 9.82274235547102 9.6913833585008 10.3202090386354 9.86639492524577 10.1500877142321 9.64259870656393 9.36731082487184 9.53754696423636 9.62596395654808 9.44625140511088 9.53211810030652 9.66806456425316 9.42726563770144 9.6260956152303 9.71952642600357 9.6568622895586 9.29400045518469 0.110327400407371 0.106679887558929 0.107131315775101 0.109137123413674 0.110146137719160 0.106679887558929 0.109992259926985 0.107107464871972 0.119906430102007 0.109435640980546 0.106795012319147 0.106679887558929 0.115218266677186 0.107155953591014 0.112268982602313 0.107546179581459 0.128474716627620 0.113991439438959 0.109110836587214 4 4|0 +|/ 10086133 10087027 10086551 10082119 10087214 + gene protein_coding_gene FALSE TRUE AT4G18240.1 starch synthase-related protein similar to ATSS3 (STARCH SYNTHASE 3), starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G11720.1); similar to starch synthase IV [Triticum aestivum] (GB:ABD64538.1); similar to starch synthase isoform IV [Triticum aestivum] (GB:AAK97773.1); similar to starch synthase, isoform V [Vigna unguiculata] (GB:CAB40375.1); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.128971136615295 1.17275938521906 0.265927072752874 1 0.0428137042510979 19.383979782187 0.128971136615295 0.122626470545780
AT1G13420_at 1.04900747981618 1.03736953160573 0.879387418787951 0.789436891553774 0.940168792753523 1.12906660643353 0.895107204057598 1.05006142306365 0.989347904432204 0.502035678889257 1.21132635403925 0.968120813657875 1.37788481796200 1.03926098389926 1.11423968481856 1.27347123833337 1.36216281079349 0.880352503303782 1.14689258520205 0.193170658661489 0.195072269012267 0.200821910698609 0.193170658661489 0.19759731859631 0.193194823344116 0.194378043269797 0.193613381795206 0.199930307430781 0.200774137393159 0.20253315363662 0.196105760874146 0.19327255944296 0.201751824386749 0.205476708802025 0.195418556878279 0.193170658661489 0.210799672797083 0.193170658661489 1 1 + 4605299 4605687 4605461.273 4604838 4606050 + gene protein_coding_gene FALSE TRUE AT1G13420.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G13430.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.100277764544759 1.17255213404155 0.266006769874259 1 0.0425971552537525 1.98758956368839 0.100277764544759 0.0451004934515125
AT2G17760_at 7.28089852557022 7.7480052868504 7.91306036185533 7.97178779051812 7.4577172867281 6.97133408123987 6.8914618320878 6.43034824631447 5.61295412688913 6.071590593395 5.92200273262801 5.77600039922544 5.40428196765757 5.29484018000083 5.76234364762792 5.52503772626682 5.99909346575564 6.06548813059557 6.11283660969935 0.254235078028934 0.258576111990282 0.260015720044491 0.253069651978799 0.251052963239390 0.273595590331962 0.255127150719239 0.251386293379294 0.269512899200614 0.254819086828366 0.260800712540693 0.254326284188190 0.273306350862352 0.265222564057695 0.258622319216875 0.251532087202112 0.263775127197463 0.254999092559622 0.250796477811230 2 2 + 7722359 7723321 7722916.7 7720396 7723546 + gene protein_coding_gene FALSE TRUE AT2G17760.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to Os04g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052287.1); similar to H0209A05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66084.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.138485997635764 1.17245850704172 0.266042779698531 1 0.0424993374131167 13.1586249136693 0.138485997635764 0.141739270492319
AT1G06230_at 7.75507640466534 7.97518637821535 7.72080663144998 7.81401184588753 8.13084098539754 7.923951178754 7.32510945336447 7.46452524256536 7.66946552282689 7.53120841325006 6.83319885470317 7.41622056666965 7.4791120676903 7.16826425198021 6.65869352449038 7.42560519631439 7.28978222191494 7.04051499221237 7.71754439308482 0.182682042886763 0.184192567907949 0.187490311735787 0.182381664605975 0.184732332633393 0.186682070258743 0.178206905128199 0.181267137367648 0.190158416064371 0.188874639388824 0.18486483661609 0.180801677751151 0.187083859109169 0.191016596842392 0.181100767068158 0.182458193930793 0.190250081579252 0.181363253390876 0.181499325031478 1 1|0 +|/ 1909330 1910138 1909697.3 1907088 1910847 + gene protein_coding_gene FALSE TRUE AT1G06230.1|AT1G06230.2 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G17790.1); similar to Bromodomain [Medicago truncatula] (GB:ABE82885.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) -0.104026929777017 -1.17185512053471 0.266274939760017 1 0.0418690846661877 15.1653535496462 -0.104026929777017 0.0597917679695621
AT1G56710_at 2.99556874666435 2.89385631687836 2.77244662021425 2.98968394429163 2.64318885447275 2.44003360230414 2.91753326804019 2.61647041683321 2.22371994929507 2.35231628345445 1.92704993479824 1.83687223542939 1.99496352970677 1.63841122403587 2.47054410915689 1.93498680459458 2.81462252861596 2.28006227852187 1.98087957964156 0.246617089479479 0.24335190384341 0.245131684566558 0.242828638381659 0.245190599211958 0.250812157034140 0.242390722288141 0.248504626403589 0.246429540995779 0.244381950029669 0.251107705365024 0.244730184136382 0.246398257671807 0.246652529790716 0.242390722288141 0.254773554329260 0.242390722288141 0.248652172317843 0.243866732830490 1 1|0 -|/ 21261889 21262673 21262254.5 21261673 21263598 - gene protein_coding_gene FALSE TRUE AT1G56710.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to Ribosome-binding factor A; Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE78820.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.108984227653124 -1.17168678909104 0.266339735666286 1 0.0416933019951984 4.93251156358127 -0.108984227653124 0.0753231969818085
AT1G72170_at 7.84345330954677 8.08899634574911 7.6838116771783 7.96780620528912 8.27092821910039 7.76117328499367 8.09577215426489 7.84184186362196 7.59681309694475 7.71168288622218 8.19896551562859 8.31669188301763 7.51461270525219 7.82137743657974 7.9519517170505 8.01684835853227 7.62216935270257 7.64493852398792 7.44968010513778 0.170121864830928 0.168016050120949 0.177504255310130 0.178169480942171 0.171671339443024 0.178337707256696 0.168751992780064 0.170199936637743 0.183205664290760 0.171029415411064 0.169554702050860 0.170134824167399 0.179662744441024 0.189039390600788 0.181266777770101 0.169894288154432 0.184897839061288 0.193915723026033 0.169522352358607 1 1|0 +|/ 27160081 27160554 27160392.889 27159997 27161368 + gene protein_coding_gene FALSE TRUE AT1G72170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22520.1); similar to hypothetical protein MtrDRAFT_AC125481g45v1 [Medicago truncatula] (GB:ABE94326.1); similar to Os03g0840900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051850.1); contains InterPro domain Protein of unknown function DUF543; (InterPro:IPR007512) 0.126649834418521 1.17146078993182 0.266426749122515 1 0.0414573290293373 15.6802244488158 0.126649834418521 0.118042431898292
AT3G44590_at 7.1944222992332 7.38803386207263 7.12121270516126 7.2461325452003 6.86503521589768 7.06254817075523 7.21798103113314 7.71218385025268 7.01223596822923 6.79268803261821 7.31564121566668 7.88114830362095 7.23187348257057 7.08875716453693 8.05507842274275 7.24617397668062 7.35078160993015 7.0019400484391 6.75887005556992 0.177857769033244 0.169206831670354 0.165588548555331 0.170736735356481 0.165588548555331 0.170041717276484 0.166128061147212 0.170203144489045 0.176773116094462 0.17512413426342 0.168064011544556 0.168114104642925 0.171626006603414 0.174487736452729 0.165588548555331 0.167636685348023 0.166732706978693 0.175772429507502 0.171145438482259 3 3|0 +|/ 16175003 16175620 16175347.111 16174804 16175918 + gene protein_coding_gene FALSE TRUE AT3G44590.1|AT3G44590.2 60S acidic ribosomal protein P2 (RPP2D) Identical to 60S acidic ribosomal protein P2-4 (RPP2D) [Arabidopsis Thaliana] (GB:Q9LXM8); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acidic ribosomal protein [Prunus dulcis] (GB:AAL91663.1); contains InterPro domain Putative DNA binding; (InterPro:IPR009061); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) 0.118701578899196 1.17137211096259 0.266460898111394 1 0.0413647458996503 14.3514548583779 0.118701578899196 0.100362484571834
AT1G21700_at 7.29854895117694 7.22927454210038 7.38275094893601 6.88214243264608 7.7708804978146 7.20681252249644 7.34191898198208 7.2116873671872 7.66855216556325 7.66959856190637 7.45902166224483 7.45674173022044 7.25696853810125 7.21879761013665 7.14425906409745 7.31146687497407 7.06798414485674 7.47096377036388 7.48071749755215 0.173333622825977 0.171387500400559 0.171414418214754 0.172550561285534 0.175582440061543 0.188847053011272 0.173422985749788 0.176113836748268 0.178689850835664 0.170992168259996 0.17194481198002 0.167207780394705 0.17222147379575 0.174634190241492 0.171849107978953 0.166701869363442 0.185917155871941 0.171754125688105 0.166613813617708 1 1 - 7620181 7620598 7620366.273 7619990 7624125 - gene protein_coding_gene FALSE TRUE AT1G21700.1 ATSWI3C (Arabidopsis thaliana switching protein 3C); DNA binding a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). similar to ATSWI3A (Arabidopsis thaliana switching protein 3A), DNA binding [Arabidopsis thaliana] (TAIR:AT2G47620.1); similar to Os11g0183700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065911.1); similar to SWIRM domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96607.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.13386242205227 -1.17101799306935 0.266597298086287 1 0.0409950906560606 14.7427844469000 -0.13386242205227 0.132986714395326
AT4G14060_at 2.15381145433555 1.93785092922905 2.13083046168278 2.05536865128658 2.09843527947123 2.02974869490682 1.7836080185681 2.3874006148674 2.18358252325128 2.30051582619995 2.32123620603556 1.94512322854410 2.06836969636487 2.07072200813835 2.12884473418573 2.02705849887439 1.89991043963960 1.94758652206503 2.45163634578487 0.165717755755044 0.167677002109109 0.175860296415555 0.168305349545543 0.171946623727039 0.170656462832864 0.172301355503356 0.16744030792427 0.167590151211547 0.16895697962021 0.165909337713060 0.169995914569704 0.171883628305019 0.167110337218838 0.171052320040369 0.167381285702426 0.171963453713716 0.172112280663654 0.172620276382622 4 4 + 8107469 8108101 8107952.455 8107332 8108302 + gene protein_coding_gene FALSE TRUE AT4G14060.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT2G01520.1); similar to major latex-like protein [Rubus idaeus] (GB:CAA11844.1); similar to ripening-induced protein [Fragaria vesca] (GB:CAA04770.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.123938565380458 -1.17070564354168 0.266717655156964 1 0.0406691067438989 4.25364075394826 -0.123938565380458 0.112367896558853
AT4G25140_at 1.65427295705412 1.60846977200703 1.92390321535763 1.59510203402973 1.53023634343082 1.52560145865868 1.85900736889405 1.96823706794208 2.03604930974587 2.1035829612119 2.13091399367215 1.95150984473505 1.54334526368444 1.75926616110646 2.02982281419692 1.49742058769363 1.88816306479314 2.14934797104759 1.70426641500069 0.192317132993643 0.187823583873626 0.192199854915264 0.185823184356946 0.187933939586998 0.188317738830549 0.191956337664204 0.189003304222067 0.185823184356946 0.193339210539777 0.192957542493550 0.191093406002749 0.186659228503500 0.196167591930402 0.187616510868366 0.189737363616477 0.185823184356946 0.197958044988044 0.195837256967852 4 4 + 12900524 12901110 12900691.455 12900440 12901587 + gene protein_coding_gene FALSE TRUE AT4G25140.1 OLEO1 (OLEOSIN1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Identical to Oleosin 18.5 kDa [Arabidopsis Thaliana] (GB:P29525); similar to OLEO3 (OLEOSIN3) [Arabidopsis thaliana] (TAIR:AT5G51210.1); similar to Oleosin Bn-III (BnIII) (GB:P29110); contains InterPro domain Oleosin; (InterPro:IPR000136) -0.104014272320876 -1.16943974768742 0.267205877629576 1 0.0393486284780142 3.61644874780626 -0.104014272320876 0.0604852064388234
AT2G22590_at 1.70156119413586 2.01933771653246 1.96920998643091 1.63520061054674 1.74614429444931 1.80525612541209 1.9704816832784 1.83376298453477 1.99222441894831 1.94711482036714 1.50012781064430 1.7715721153228 1.55402900702261 2.20694316398240 1.64884184974474 1.15705761742487 1.69705412130100 2.15501696948716 1.58873779199059 0.215679870541259 0.208535825917664 0.208854647535869 0.20801189253797 0.221620612022164 0.226767468717738 0.207367647256212 0.209332986466997 0.209234308450458 0.213337648702019 0.212044475071208 0.210603596734764 0.207367647256212 0.219298583459050 0.215506487152017 0.209893856262685 0.213275465088866 0.213749107971031 0.216255613204011 2 2 + 9600930 9601305 9601108.273 9600076 9601615 + gene protein_coding_gene FALSE TRUE AT2G22590.1 glycosyltransferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G65550.1); similar to putative anthocyanidine rhamnosyl-transferase [Capsicum annuum] (GB:AAM12787.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.111847576156528 -1.16925598987463 0.267276806448552 1 0.0391570375388728 3.61213066223253 -0.111847576156528 0.0838432241391714
AT2G38370_at 2.63942828287107 3.0801960526966 1.91648501211445 2.08125350130593 2.27621985199948 2.49689271360217 1.78795287233575 1.95950101528338 1.61908315156522 2.11242403503593 2.29420562418393 2.37098810957728 1.36572041301276 1.77859570371566 2.48292774459249 2.0787140438329 1.6695164567842 2.18089512688088 2.52592219490785 0.210015032015505 0.212844348203299 0.214975486015522 0.215185218071461 0.205680118331856 0.212925195991796 0.203963526328524 0.206248367589522 0.209820339072684 0.204750275596439 0.210968272026048 0.210189820185221 0.210011505265545 0.21102019719722 0.205006378036729 0.210498264659552 0.20738334814266 0.209102991353728 0.213049251428034 2 2 - 16079321 16079756 16079579.455 16079148 16081336 - gene protein_coding_gene FALSE TRUE AT2G38370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51720.1); similar to putative paramyosin [Zea mays] (GB:AAV64207.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88908.1); similar to Os03g0339700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050061.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) -0.116085588527505 -1.16883828024135 0.267438093513030 1 0.0387216069982665 4.33649376110553 -0.116085588527505 0.094714852074713
AT1G30130_at 6.18382966042711 5.83353046546533 5.79874250652288 6.14013449109772 7.09651721255328 6.30924368148998 6.76921254543943 6.671402158288 5.63720758092169 6.51291097202716 6.22790688281293 6.20801038721695 6.72792140869877 6.67068223384865 6.22786837525586 6.77256825511934 6.64975225735995 6.2427165768275 6.27230099865695 0.203407820111493 0.199798964259600 0.203346405263866 0.201506946004414 0.197709419161383 0.205152251028584 0.197405345531279 0.205092890657304 0.208072556004741 0.205367208266193 0.206599408921528 0.195793065499400 0.200059582098467 0.197603087723462 0.206234514934978 0.197803221201946 0.202898814257672 0.195793065499400 0.200297966832914 1 1|0 +|/ 10588551 10589178 10588879 10587586 10589744 + gene protein_coding_gene FALSE TRUE AT1G30130.1|AT1G30130.2 similar to hypothetical protein [Brassica oleracea var. alboglabra] (GB:CAA99112.1); contains InterPro domain Protein of unknown function DUF1365; (InterPro:IPR010775) 0.148393772725778 1.16845892560034 0.267584637061378 1 0.038326260928938 12.6536939973327 0.148393772725778 0.161286992875615
ATCG00440_at 12.625168901062 12.6722072112920 13.0432685398978 12.9308900592023 12.6511273898329 12.5284199098211 12.9458929481572 12.9552355822263 13.3895099384306 13.6537733140623 13.9595679714455 13.8993782713071 13.6461682308552 13.7280830483121 13.6520079686336 13.8075689756419 13.3587693322449 13.658980259694 13.4823706985336 0.0768525009163719 0.071734215681461 0.0748234230579862 0.0731271138564473 0.0736834654859335 0.0762096027663312 0.0726444193673347 0.0742513996596667 0.0848329805120875 0.0729900047737962 0.0766727058345946 0.0730457769962242 0.0729508045454182 0.0769333232865 0.0768574315266015 0.0725761054897526 0.0796721167000982 0.0776803791722702 0.0732669640376082 C C - 50045 50318 50175.909 50001 50363 - gene protein_coding_gene FALSE TRUE ATCG00440.1 Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex Identical to NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) (ndhC) [Arabidopsis Thaliana] (GB:P56751); similar to NADH-ubiquinone oxidoreductase chain 3, putative [Arabidopsis thaliana] (TAIR:AT2G07751.1); similar to NADH dehydrogenase subunit 3 [Jasminum subhumile] (GB:ABG74817.1); similar to NADH dehydrogenase subunit C [Populus alba] (GB:YP_665563.1); contains InterPro domain NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; (InterPro:IPR000440) 0.0970322521310565 1.16845165950117 0.267587444548661 1 0.03831868948314 26.4052097298242 0.0970322521310565 0.0299669203113361
AT2G20980_at 2.35952774260142 2.49162690885068 2.42826976655313 2.50376073936034 2.35775878698363 2.55000727233932 2.41990109518266 2.56220849914716 2.97756842346941 2.28528133051599 2.95031498195952 3.13217903826735 2.36894394695451 2.9927542885986 3.11445747893251 2.96755230978059 2.93597743861470 2.61717540723474 2.79176497581134 0.222473183636588 0.222356143697341 0.221125655946756 0.225026737459224 0.228617624361848 0.226325963174391 0.226327421560745 0.225707112723671 0.233438242925842 0.222569620060039 0.223545876957323 0.225233813633962 0.220066966779399 0.220066966779399 0.231444517631559 0.223666230800475 0.220066966779399 0.223605268832799 0.224766855153281 2 2|0 -|/ 9019272 9020128 9019799.778 9018470 9021012 - gene protein_coding_gene FALSE TRUE AT2G20980.1 similar to hypothetical protein [Hordeum vulgare] (GB:CAG30729.1); similar to Os09g0539400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063804.1); contains domain gb def: Hypothetical protein (PTHR13454:SF4); contains domain FAMILY NOT NAMED (PTHR13454) 0.100840432278764 1.16824412429817 0.267667642102956 1 0.0381024480211972 5.24402807032316 0.100840432278764 0.0490572441851437
AT3G06580_at 9.44793788832243 9.48110725902578 9.7514944544131 9.58485970496812 10.0937544993416 9.62138482808772 9.5777301159815 9.20094954556491 9.24857826577946 9.52047890627122 9.38241753422113 9.22524009910924 9.34413444465412 9.37579405562177 9.1063282597979 9.0675263075793 9.29643669481323 9.20871003527275 9.25936376058184 0.104668546452772 0.103073554561597 0.105854032738340 0.103073554561597 0.109742740476259 0.112321242726347 0.107907841659774 0.10775424379793 0.117982897109960 0.109590948415015 0.103787476176330 0.107064668598397 0.104061788249555 0.108325790278628 0.103909452140936 0.109507740353928 0.113176517420923 0.103073554561597 0.106828083393517 3 3|0 -|/ 2049359 2050186 2049746.444 2048911 2052031 - gene protein_coding_gene FALSE TRUE AT3G06580.1 GAL1 (GALACTOSE KINASE 1); ATP binding / galactokinase Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast Δgal1 mutant defective in the galactokinase gene GAL1. Identical to Galactokinase (EC 2.7.1.6) (Galactose kinase) (GAL1) [Arabidopsis Thaliana] (GB:Q9SEE5;GB:O24021;GB:O48936); similar to ARA1 (ARABINOSE SENSITIVE 1), ATP binding / galactokinase [Arabidopsis thaliana] (TAIR:AT4G16130.1); similar to putative galactose kinase [Trifolium pratense] (GB:BAE71243.1); similar to Mevalonate and galactokinase [Medicago truncatula] (GB:ABE82788.1); similar to galactokinase [Pisum sativum] (GB:CAF34022.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Galactokinase; (InterPro:IPR000705); contains InterPro domain GHMP kinase, ATP-binding region; (InterPro:IPR006203); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.121979310409243 1.16817341316981 0.267694971220078 1 0.0380287771671446 18.8917174901771 0.121979310409243 0.108620451951595
AT3G57720_at 2.82926560640454 2.61028299328390 2.90509978580568 2.69304724100554 3.21324047251348 3.04972146390754 3.12762638303288 3.02443442784834 3.32761741880609 2.90139646851526 3.44938339659143 3.51702113741787 3.43128295738635 3.17737510340109 3.28477803546752 2.96497047739044 3.35219263087536 3.34746835570182 3.29298067893061 0.171443420329406 0.169902938048315 0.170216121154094 0.171087452226475 0.173400945014109 0.165631979740621 0.166979261294995 0.167700781741281 0.173921285887027 0.165782897248695 0.164863194736837 0.165066567861314 0.165429265931657 0.167391311637346 0.169926435828677 0.166547323698652 0.167726723629789 0.179169459824046 0.170032995473777 3 3 + 21399299 21399718 21399492 21398699 21400703 + gene protein_coding_gene FALSE TRUE AT3G57720.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57730.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.104467855596992 1.16793812687459 0.267785922700831 1 0.0377836669659806 6.17636839699006 0.104467855596992 0.0624693089759436
AT3G29660_at 1.87145684326857 2.03304215155005 2.42345564809295 2.46841237908936 1.77191058013532 2.0033633048398 1.80070402837192 2.11356342347837 2.02011150683844 2.17703629131523 2.34373319542065 2.04775984514224 2.13524145809216 1.9886993930253 1.93247335601101 2.31467374285389 2.28032014349306 2.20059506375751 2.25780367269964 0.143714769302580 0.132178454372909 0.132231224410168 0.131640041777868 0.131920628685542 0.127981994085534 0.133136081393403 0.130548269971404 0.133559746229246 0.140378163154544 0.127981994085534 0.137866740216459 0.145708208843300 0.131528902087279 0.127981994085534 0.131651643692617 0.133479462302515 0.132669733737709 0.127981994085534 3 3|0 +|/ 11525022 11526318 11525336.556 11525003 11526500 + gene protein_coding_gene FALSE TRUE AT3G29660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37120.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G18420.1); contains domain UBC-like (SSF54495) 0.107940200406084 1.16781620286140 0.267833062778452 1 0.03765666700589 4.21428230235775 0.107940200406084 0.073335634502166
ATCG00770_at 10.2985378012015 10.1224282723184 10.2951709983485 10.0109314242906 10.8387708823143 10.0184982110038 11.4334378769993 10.3697149569203 11.1044697098452 11.1332807054363 11.9239108465819 12.0566625507416 11.6246765758726 11.8285353785936 11.7618721675927 11.9616133016343 11.2456488909982 11.1835114867301 10.8964186046613 0.123310212269116 0.126382190275746 0.122972728439618 0.128782054663990 0.126301224566014 0.129413507155172 0.125366545414635 0.122896707247506 0.127081492551832 0.119026395152135 0.123649486035632 0.123779613366918 0.121693021930184 0.127557299059446 0.122178110173973 0.123640889508148 0.126992263654322 0.122396506683585 0.129790150850754 C C - 80078 80446 80255.818 80068 80472 - gene protein_coding_gene FALSE TRUE ATCG00770.1 chloroplast 30S ribosomal protein S8 Identical to Chloroplast 30S ribosomal protein S8 (rps8) [Arabidopsis Thaliana] (GB:P56801); similar to ribosomal protein S8 [Eucalyptus globulus subsp. globulus] (GB:YP_636334.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) 0.194197022662479 1.16763190944399 0.267904329406831 1 0.0374647201837501 21.7949497561699 0.194197022662479 0.239551690053532
AT2G17850_at 0.859618313555926 1.26457290227859 1.60087267538287 1.52498539930615 1.03311315621485 0.88579850169948 1.05221649901656 1.39483784338468 1.25218652102316 1.87601303701626 1.14691371631045 1.21681335892909 1.44982241294650 1.12378247291297 0.992124586537928 0.89466918282779 0.863143945840963 1.06746287378361 1.20895017018882 0.187555641128225 0.186682107518784 0.187148429838818 0.184589147361784 0.182877582802701 0.187515614205639 0.195450837497031 0.186691837047446 0.193511191319176 0.184496708285941 0.183948194880710 0.189459167372187 0.188456422091248 0.189123153171425 0.196069385650111 0.184589504629400 0.185009861928358 0.193541042953235 0.186640150691664 2 2|0 -|/ 7767145 7767746 7767498.111 7767087 7767904 - gene protein_coding_gene FALSE TRUE AT2G17850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66170.2); similar to Rhodanese-like domain [Medicago truncatula] (GB:ABE88183.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.116496981861508 -1.16694762928876 0.268169072117271 1 0.0367522242825929 2.47203098377351 -0.116496981861508 0.0961720198512192
AT3G49190_at 1.68244401583122 1.45408657121963 1.80525652590764 2.0434767188249 1.32253437627901 1.42134981103973 1.42922928184838 1.86721533248056 1.61576876132795 1.48026555889787 1.2524945891598 1.34958434494227 1.81294956083397 1.25006207074411 1.31679755966602 1.51419323613760 1.44968346959860 1.46577773225255 2.00247141379477 0.204802281997781 0.193055830198511 0.192599561181899 0.197120631708073 0.195492743325919 0.202142622354217 0.196836780374739 0.190781496250242 0.200283249820850 0.194791461158669 0.195016560916292 0.196621777628846 0.195354820900668 0.198625012030054 0.199871433720581 0.20040955156685 0.201784742322057 0.199807345370832 0.21652408675219 3 3 - 18242985 18243838 18243277.182 18242861 18245376 - gene protein_coding_gene FALSE TRUE AT3G49190.1 condensation domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49200.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49210.1); similar to Protein of unknown function DUF1298 [Medicago truncatula] (GB:ABE82755.1); contains InterPro domain Protein of unknown function UPF0089; (InterPro:IPR004255); contains InterPro domain Protein of unknown function DUF1298; (InterPro:IPR009721) -0.116574266627730 -1.16665637337488 0.26828181904741 1 0.0364490549178225 3.19117144505741 -0.116574266627730 0.0964292286291583
AT4G04900_at 2.83002802420301 3.26144238144699 3.14558581726417 2.98884348462771 2.34646164692751 2.88607302295408 2.50958616639759 2.34385495439859 3.25019947067292 3.00851341388593 2.575501112545 2.88745802118378 2.61333206044396 2.60160195662921 2.72395603687455 2.31915835447550 3.02763201263557 3.16199282645794 3.05355559878126 0.188298703056092 0.182435930027045 0.178742473684205 0.185204371115075 0.182167574945781 0.180767656164837 0.181793649140772 0.183699934114932 0.183961837140996 0.187066743798213 0.179390938337800 0.185270603237588 0.180936704883756 0.186128505933594 0.180506367363393 0.184113480220723 0.188626538741765 0.194485663161075 0.179054538519081 4 0|4 /|- 2486245 2487194 2486811.444 2486216 2487777 - gene protein_coding_gene FALSE TRUE AT4G04900.1 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC9 and RIC11 (subfamily group I). Gene is expressed predominantly in roots, leaves, and seedlings. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21745.1); similar to Os06g0681300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058377.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25214.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026) -0.129873667729595 -1.16660126533676 0.268303155886625 1 0.0363916992235777 5.71044370832865 -0.129873667729595 0.125906488632311
AT3G07510_at 2.14724291027656 2.89964501661634 1.61556132301546 2.44066184334123 2.50833114457788 2.56254450113945 3.01802756254454 3.21411598958851 3.13218451680564 2.75373495221471 3.10574182777530 3.45601340982289 2.84934029182442 3.31190653701353 3.92727948058817 2.26496957117471 2.52476660794692 2.59805364167472 2.52262797252183 0.235021071712807 0.233318837166493 0.236454685984913 0.229627074095739 0.226796620144820 0.236769253405019 0.223604842536808 0.223604842536808 0.229975034945639 0.226210395024855 0.231357472298219 0.226081400238268 0.231324059443097 0.229311061025901 0.223604842536808 0.223908124081067 0.24409754345383 0.237743366538645 0.230999939996193 3 3 - 2393925 2394445 2394133.182 2393692 2394681 - gene protein_coding_gene FALSE TRUE AT3G07510.1|AT3G07510.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01580.1); similar to Os07g0240400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059264.1); similar to Os10g0178200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064246.1); similar to H0201G08.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67780.1) -0.168036696470564 -1.16655495317372 0.268321088151065 1 0.0363434997478234 5.45457032046665 -0.168036696470564 0.196421964940394
AT4G16890_at 6.44899464954311 6.82507976972766 6.81131217075077 6.8262737367918 6.98564822015584 6.44149456359988 6.68123466742243 6.70427151409029 6.80015728376703 6.55101204336146 6.96826760931572 6.90728591030389 6.84148351947788 6.98949982085711 6.24219935669164 6.92842339614356 6.54279904936345 6.6776586217723 6.49225931101845 0.145434445305081 0.141944695644300 0.14395617062864 0.143951715062514 0.141625463104047 0.1536807266908 0.149887838338854 0.146747625504393 0.146927562875593 0.147896740772911 0.146746811272191 0.141625463104047 0.144610602240499 0.14812126223893 0.158648312020822 0.141625463104047 0.145396809228977 0.145532701614737 0.146006317827844 4 4|0 -|/ 9500525 9501491 9500909.5 9500525 9505474 - gene protein_coding_gene FALSE TRUE AT4G16890.1 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.1); similar to RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) [Arabidopsis thaliana] (TAIR:AT4G16860.1); similar to MRGH5 [Cucumis melo] (GB:AAO45748.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.124506485201874 1.16655175818903 0.268322325297255 1 0.0363401746147581 13.4038778481134 0.124506485201874 0.114569214544521
AT1G77760_at 11.6190233440205 11.7800240430873 11.8368953748805 11.9692637589459 11.6991860136583 11.7052590799302 11.9711412703012 11.9429200873024 10.8953676260399 11.4977730049966 11.1827095740438 10.9656319309666 10.8678572455153 10.9219620973623 10.2004889659088 11.2720403763261 11.2602397819691 11.4252663079452 11.1538743384387 0.0796464109698466 0.0795282830269662 0.0831703100058456 0.0791555089497331 0.0837006007306674 0.0811764167482592 0.0799847200977224 0.0821098864241414 0.0973605129315078 0.0833929384638443 0.0797653333495179 0.0789323161683304 0.0802695792993648 0.0854962613002069 0.0906700796832317 0.0796646686130601 0.0819609870659914 0.0854858688317609 0.0824331705514463 1 1 - 29240959 29241466 29241294 29240697 29244339 - gene protein_coding_gene FALSE TRUE AT1G77760.1 NIA1 (NITRATE REDUCTASE 1) Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin. Identical to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) (NIA1) [Arabidopsis Thaliana] (GB:P11832;GB:Q9CA18); similar to NIA2 (NITRATE REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT1G37130.1); similar to Nitrate reductase [NADH], clone PBNBR1405 (NR) (GB:P39867); similar to Nitrate reductase [NADH], clone PBNBR1412 (NR) (GB:P39868); similar to nitrate reductase 2; NR2 [synthetic construct] (GB:AAS86310.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain NADH:cytochrome b5 reductase (CBR); (InterPro:IPR001834); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066); contains InterPro domain Nitrate reductase NADH dependant; (InterPro:IPR012137); contains InterPro domain Cytochrome b5; (InterPro:IPR001199); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) -0.097969958738955 -1.16651287451367 0.268337382000597 1 0.0362997075591858 22.9126455505973 -0.097969958738955 0.0364138971687653
AT1G03530_at 3.39276392687541 2.64849532436808 3.13183563879701 3.23701292958440 2.71566700072489 3.37401038268448 3.04699110455926 2.96262394359498 2.51313176206544 2.80087918450803 2.89863633885427 2.95411308177991 2.80359296957207 2.44460516779733 2.67688708112861 3.06371030132583 2.97559064727609 2.83759256298098 2.55795670632803 0.205471819187324 0.211419853254367 0.209459656449627 0.206235261900250 0.203466926972144 0.205691341942583 0.205960030030522 0.208415051523779 0.206134910013509 0.206425234674919 0.208291211361630 0.205506873569095 0.203466926972144 0.209415653264391 0.203641766496904 0.204546570395454 0.207728432453805 0.207698708027175 0.206946482094388 1 1 - 880727 881187 880951.364 880497 883391 - gene protein_coding_gene FALSE TRUE AT1G03530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66540.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_456157.1); similar to Os05g0502800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055976.1); contains InterPro domain NAF1; (InterPro:IPR008696) 0.154882357151907 1.16627359318727 0.268430052131214 1 0.0360507050278698 5.79159014963517 0.154882357151907 0.173532659167546
AT3G46110_at 4.96635569818069 4.8596255196802 4.71113742795933 5.22371291076809 4.83850492953812 4.99526900683975 4.23232003838846 4.48811488742831 5.34979343851024 4.46435678911285 4.59045882829291 4.73566739696564 4.07506082723682 5.05879754330974 4.57449729877554 4.78092440027329 4.44552929780651 4.95309746484063 4.33826759722041 0.189776380984025 0.195515766600667 0.192416540233611 0.203600799793434 0.192095118081024 0.190213377224553 0.190177714405674 0.19274896727288 0.195284754726738 0.190196154390417 0.195595959183977 0.189776380984025 0.195430508539758 0.200468749390718 0.189776380984025 0.194866579548354 0.196872383320942 0.196881003493647 0.192467065036917 3 3 + 16943841 16944516 16944051.091 16943097 16944711 + gene protein_coding_gene FALSE TRUE AT3G46110.1|AT3G46110.2 signal transducer similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59790.1); similar to auxin-regulated protein [Lycopersicon esculentum] (GB:AAL08561.1); contains InterPro domain Protein of unknown function DUF966; (InterPro:IPR010369); contains InterPro domain CheW-like protein; (InterPro:IPR002545) 0.119916778381688 1.16611852453035 0.268490121341976 1 0.0358893571740878 9.47399342258227 0.119916778381688 0.104426830681694
AT4G07410_at 5.23220626937463 5.120158404299 4.98455651977181 4.45389968381301 5.31125792041384 4.41322814211515 5.79554349881867 5.13948796918549 5.08047351004227 4.567288943352 5.02398708434904 5.56026035676168 4.81976041109729 4.75450439001857 5.22783632686903 5.23082446407187 5.25318020392004 4.9572608906969 5.13983943569942 0.236558415071638 0.224250019892379 0.233875727021437 0.227540243227682 0.224250019892379 0.228578065737873 0.224250019892379 0.22827889249081 0.245846680448791 0.227904594561949 0.232950655962669 0.224883407832739 0.224250019892379 0.233241772546456 0.241000562954817 0.232308179760612 0.249217121321042 0.231463418805052 0.224250019892379 4 4 - 4201541 4202120 4201911.909 4201246 4205221 - gene protein_coding_gene FALSE TRUE AT4G07410.1|AT4G07410.2 transducin family protein / WD-40 repeat family protein similar to transducin-related / WD-40 repeat protein-related [Arabidopsis thaliana] (TAIR:AT1G27470.1); similar to Os03g0735100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051185.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT78790.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.178431166307921 -1.16591156034085 0.268570309841270 1 0.0356740377816419 10.0726184988094 -0.178431166307921 0.214127979865611
AT2G43250_at 3.99874374430065 3.93389762912425 4.26179560565701 4.64926505625695 4.34554523364997 4.38974435796625 3.8728863026451 4.3807606894501 4.07416842044651 3.67844603800912 3.88477679047960 3.90899403111518 3.68211112395136 3.68372488353224 3.23491506982197 3.62768082121299 4.01775217759943 3.60496579540730 3.72157640311568 0.203582426083145 0.207908355288404 0.21153072848041 0.201013674898427 0.202936082622492 0.207566584991012 0.202610723181352 0.202244817199613 0.209084005769926 0.208488872927183 0.205275361434956 0.201013674898427 0.208534123548467 0.209236816412759 0.202177963144635 0.201928676154853 0.207941955816831 0.209927822659217 0.210197802293736 2 2 + 17986068 17986518 17986277.727 17984305 17986685 + gene protein_coding_gene FALSE TRUE AT2G43250.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91029.1) 0.122950135726045 1.16560694247427 0.268688368533081 1 0.0353571752418523 7.9942525142965 0.122950135726045 0.111378867490284
AT1G09770_at 8.06689025463182 8.29677893193927 8.02127243300437 8.17117656780676 8.47101163343392 8.46053275540436 7.5766182903584 7.76414238650704 7.71813602647403 8.0189387293145 7.91370137997825 8.40433758461739 7.96545218301504 7.72506581640723 7.68482446077912 8.13662849613063 7.67567743991892 7.43061564683446 8.31177030577805 0.185563952721639 0.187774909337867 0.191488062584576 0.187596811599923 0.188436933587071 0.189569616692779 0.188704517794894 0.188984055623798 0.190983279318264 0.185726515873966 0.191229083558053 0.187669366616937 0.195733787098045 0.189989241894693 0.188233080357163 0.184070345363387 0.201138972885500 0.196016956034612 0.195800316590645 1 1 + 3164498 3165086 3164753 3161843 3165362 + gene protein_coding_gene FALSE TRUE AT1G09770.1 ATCDC5 (Arabidopsis thaliana homolog of cdc5); DNA binding / transcription factor member of MYB3R- and R2R3- type MYB- encoding genes similar to MYB3R-5 (myb domain protein 3R-5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02320.1); similar to Unknown (protein for MGC:154633) [Xenopus laevis] (GB:AAI28683.1); similar to CDC5 protein [Zea mays] (GB:AAL59389.1); similar to Unknown (protein for MGC:114655) [Xenopus laevis] (GB:AAH97531.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.102823535162244 1.16546937039891 0.268741699754245 1 0.0352140938333255 16.0452126882102 0.102823535162244 0.0575507971210874
AT1G52900_at 0.615694755156411 0.511058758132854 0.48577408887707 0.704138667140816 0.311685803127569 0.821401914362216 0.031708821909914 0.693102828250521 0.457309597012002 0.934105916038627 0.482706451893379 0.433637678778869 0.850931300280031 0.46203734858001 0.305310306300334 0.64929906035623 0.412984868791762 0.728571562502981 1.43722794879180 0.193384994926559 0.193384994926559 0.196549008555783 0.199314045555920 0.199139040058521 0.197242946344087 0.195931579188326 0.201669254568298 0.198250253881081 0.196250170706461 0.195117517802662 0.200735659216856 0.196614657906379 0.19699713716735 0.198508930784669 0.195677747165725 0.195570005536599 0.198433014056343 0.203833121641524 1 1 - 19706074 19706507 19706281.364 19705879 19706584 - gene protein_coding_gene FALSE TRUE AT1G52900.1 disease resistance protein (TIR class), putative similar to disease resistance protein-related [Arabidopsis thaliana] (TAIR:AT1G61105.1); similar to putative TIR/NBS/LRR disease resistance protein [Pinus taeda] (GB:AAM28917.1); similar to Os07g0566800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060018.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -0.142168752123767 -1.16517209886217 0.268856968453661 1 0.0349049613390808 1.26360369268613 -0.142168752123767 0.150456508075666
AT4G14010_at 6.82449360658749 7.00762899043875 7.07228937665327 7.31279069916774 6.44224619330824 7.4243483630269 7.06112587098173 8.0339955090171 8.33558890037869 7.98557471562685 9.16037788960441 8.94182473566286 8.79177536117705 9.10071875147189 8.76333388182935 8.67229656504068 8.26827889904092 9.20520110318694 8.57896601957416 0.183186715979689 0.169759619850784 0.180171824394193 0.168699097252451 0.176889776763134 0.194296442499272 0.178468279248557 0.169801638483226 0.173673763094489 0.169147801530149 0.169548772206383 0.167588255777397 0.166246745777026 0.170430087461192 0.176593787387096 0.174785469413322 0.184559849298597 0.166246745777026 0.166950481284234 4 4 - 8093011 8093325 8093149.636 8092828 8093377 - gene protein_coding_gene FALSE TRUE AT4G14010.1 RALFL32 (RALF-LIKE 32) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to Rapid ALkalinization Factor [Medicago truncatula] (GB:ABE90453.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.197020175149816 1.16479017324988 0.269005119141225 1 0.0345078851169294 15.7288743812660 0.197020175149816 0.244881794306889
AT2G47300_at 1.05093713234670 1.04501573531612 0.991060214920018 0.971033289652176 1.34049165081343 1.10486327358205 1.04686909481742 0.88021413017063 1.51635487676685 1.16667650805091 1.29013586551206 1.12153694875115 0.810486923627454 1.35992893104844 1.24609069137695 1.18161547377642 0.980822963455457 0.867037437307748 1.53150023871150 0.153050538556766 0.154316998686751 0.155382896000218 0.156777975642367 0.152793319602107 0.156359059519325 0.157744828885 0.154306143771095 0.153599140179250 0.158459314580516 0.153876999349776 0.152765027096847 0.154176651295327 0.155075108903162 0.152961821106633 0.154468222656510 0.154188199455289 0.154691767837687 0.156939443744824 2 2 + 19425858 19428546 19427264.7 19425541 19429311 + gene protein_coding_gene FALSE TRUE AT2G47300.2|AT2G47300.3 ribonuclease P similar to Ribonucleases P/MRP protein subunit POP1 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95344.1); contains InterPro domain POPLD; (InterPro:IPR012590); contains InterPro domain Ribonucleases PMRP subunit POP1; (InterPro:IPR009723)|similar to Ribonucleases P/MRP protein subunit POP1 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95344.1); contains InterPro domain POPLD; (InterPro:IPR012590) -0.100766943036797 -1.16449639337454 0.269119121242634 1 0.0342025186390364 2.30983595463567 -0.100766943036797 0.0500755581669467
AT3G19270_at 3.19522199236988 3.27113429242584 2.67326310988554 2.88827761961092 3.80473757914472 3.73987942068429 3.52472174463597 2.93036405020740 1.16443694022389 1.14048192241023 1.02175792807076 1.46370522428583 2.28072951685374 1.52825475253901 1.28690952298014 1.18157557964768 2.45515229454539 1.84722772380784 1.99788594918955 0.247993069597975 0.251746401139468 0.239766657832192 0.239426958850244 0.254206182770889 0.250230755700637 0.24379008618601 0.250991640769367 0.240151371850328 0.253534635229006 0.245180548835991 0.239910845506331 0.249602826682669 0.241343582322898 0.249432684064089 0.246792619337927 0.255655425692425 0.246711064823804 0.243347506862735 3 3 - 6673909 6675319 6674657 6673733 6676526 - gene protein_coding_gene FALSE TRUE AT3G19270.1 CYP707A4 (cytochrome P450, family 707, subfamily A, polypeptide 4); oxygen binding Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. similar to CYP707A1 (cytochrome P450, family 707, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G19230.1); similar to cytochrome P450 monooxygenase [Nicotiana tabacum] (GB:AAZ23260.1); similar to ABA 8'-hydroxylase CYP707A2 [Solanum tuberosum] (GB:ABA55733.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.122537354827502 1.16444250495811 0.26914003690366 1 0.0341465112352557 4.78716614534516 0.122537354827502 0.110736267170607
AT3G54930_at 2.35185927115135 2.29457576404215 2.13610479996798 1.98049551650932 2.49784598093369 2.04496501844684 2.69394475541052 2.59818048110965 2.51558327362752 3.02142298451888 2.93289994081521 3.26246434939755 2.69814468729645 3.18107272856860 3.14817631745237 2.7156176982422 2.72707605546184 3.15708876321957 3.10820271799057 0.182035498224011 0.181385333678057 0.185003843430872 0.198844374956482 0.177329416870414 0.182470629949550 0.175116969075390 0.180810411782630 0.187033375126397 0.177475953164827 0.180755225391612 0.18180192377078 0.175116969075390 0.176323462515849 0.182715711315694 0.180884656057684 0.179107277665991 0.175116969075390 0.179108839740439 3 3|0 -|/ 20362170 20362701 20362495.1 20361817 20363926 - gene protein_coding_gene FALSE TRUE AT3G54930.1 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative Identical to Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' epsilon isoform (PP2A, B' subunit, epsilon isoform) (AtB' epsilon) (B'EPSILON) [Arabidopsis Thaliana] (GB:Q9SV41); similar to ATB' BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime beta), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G09880.1); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to Os03g0681800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050908.1); similar to Os08g0122000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060884.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.111852998393115 -1.16439371341385 0.269158975419652 1 0.0340958028219168 5.25452339491429 -0.111852998393115 0.085090753245637
AT2G23640_at 2.16013373492858 1.72180003280597 2.17249959101222 1.88426329429568 1.63586982400572 2.01037176202854 1.79015684759695 1.92050967067368 2.31685247543800 1.66540497363648 1.87009875338989 1.71398018886726 1.65704616290483 1.66104185041590 1.49900225962228 1.67141016654814 1.86143998364519 1.87602001761936 2.02272078026650 0.216185203852788 0.208011966939882 0.208399850691822 0.206748739490251 0.205015427077553 0.219377174669925 0.217665796506125 0.202625973774057 0.202617281026060 0.216969287501684 0.213110688254749 0.211341129463814 0.206004675405534 0.209524183381944 0.207712511394419 0.204672858391894 0.209859698277394 0.208935854933607 0.205974097871920 2 0|2 /|+ 10064842 10065950 10065187.111 10064634 10066188 + gene protein_coding_gene FALSE TRUE AT2G23640.1 reticulon family protein (RTNLB13) similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10915.3); similar to 24 kDa seed maturation protein [Glycine max] (GB:AAD01540.1); contains InterPro domain Reticulon; (InterPro:IPR003388) -0.123901720284734 -1.16417408846223 0.26924423613124 1 0.0338675694928344 3.77590776099689 -0.123901720284734 0.113803693922151
AT3G13370_at 1.72110957857871 1.68828693901401 1.66517203147744 1.68920507732777 1.84044482005468 1.93305859374725 1.68396458030033 1.81098373331589 2.22220624971715 1.91675589652118 2.34303940586747 2.42432942956983 2.64417707578287 1.86364970651137 1.96311581023872 2.24928256270340 2.12018717459163 2.29597768169937 2.16435254510476 0.191507730825477 0.200494967902121 0.187967679659500 0.186520139968508 0.186673504018199 0.197945626408576 0.182862316373250 0.182862316373250 0.200900324771783 0.196004840014293 0.189176214254554 0.186447458839419 0.189281869624212 0.186073907731327 0.188883107063061 0.182862316373250 0.18941010555731 0.185395413327275 0.190606905893441 3 3 + 4341673 4342204 4341992 4341671 4342237 + gene protein_coding_gene FALSE TRUE AT3G13370.1 similar to unnamed protein product [Homo sapiens] (GB:BAC86381.1) 0.0963744408028827 1.16389816552836 0.269351382315190 1 0.0335808779510037 3.92356554571949 0.0963744408028827 0.0280999901124529
AT4G05570_at 1.89824629553032 1.95926209037143 1.84437475706924 2.11241574811196 1.64282384911933 2.05160125525270 1.80985733508778 1.80575121836964 2.20304756079511 1.38734033039065 2.03401020690636 1.65877241220403 2.18207501623364 1.74214151442423 2.36558428929852 1.40878415644209 1.80429082843564 1.89588382012337 1.5315376041217 0.210023458868342 0.209097842914031 0.206624388221268 0.207178037512267 0.213209808184385 0.214579601032179 0.208751283455136 0.209426585062317 0.220761566547409 0.208807869807231 0.211772043800762 0.206543999848031 0.211697779572065 0.206543999848031 0.206698718308580 0.217320007415846 0.211451141141686 0.213801185884677 0.232632546138636 4 0|4 /|- 2839624 2840398 2840074.143 2839609 2840634 - gene protein_coding_gene FALSE TRUE AT4G05570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42460.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.11182947481059 1.16351247056795 0.269501211093927 1 0.0331802168847489 3.68741720808620 0.11182947481059 0.0852519912505283
AT4G28025_at 9.63294397108367 10.0662276931815 9.7900633448934 9.8381531272914 10.1186488122151 9.9954200761755 10.0933398015231 10.6708205055311 10.5966530224980 10.5899091899788 10.4073218185174 10.5440984330682 10.4128767111802 10.5888219011282 10.3442226055683 10.8407423003310 9.95053603206139 10.5604214041154 10.4213860211268 0.116339765799940 0.100823636394138 0.101833750953069 0.111126737604474 0.111607875383996 0.102852419027611 0.111232696730478 0.106649750327097 0.105111704359852 0.105152936706132 0.101538228332087 0.0999925122997098 0.102463755588314 0.104098786799466 0.100469131365392 0.104475758897919 0.127969897563096 0.0999925122997098 0.104326148738161 4 4|0 -|/ 13935842 13937317 13936460.111 13935610 13937514 - gene protein_coding_gene FALSE TRUE AT4G28025.1 similar to hypothetical protein MtrDRAFT_AC157348g23v1 [Medicago truncatula] (GB:ABE86435.1) -0.130057123237163 -1.16341085327297 0.269540696669303 1 0.0330746733538557 20.5217586141273 -0.130057123237163 0.127017489801841
AT1G69240_at 0.944968634292006 0.935105523560007 0.775431021554337 1.23357815031392 0.88770170800587 1.00299326577724 1.06411287035476 1.28388670493059 1.35529332563924 1.24349444765494 0.948211566859796 1.05437152194954 1.34964817459019 1.42138765265914 1.06563661363310 1.13670355951391 1.03781467246370 1.22967462777184 1.30329840146659 0.199658481115022 0.199658481115022 0.208012510753693 0.207037334001314 0.205560192452251 0.206684093705698 0.21320963759262 0.199658481115022 0.206534314960789 0.206847063675694 0.203414630455038 0.2000677934939 0.205888949969351 0.207930722891666 0.206726902511702 0.201057918020706 0.202518059226821 0.199658481115022 0.205826011436516 1 1|0 -|/ 26031790 26032526 26032142 26031639 26033897 - gene protein_coding_gene FALSE TRUE AT1G69240.1 hydrolase, alpha/beta fold family protein similar to SP1L1 (SPIRAL1-LIKE1), hydrolase [Arabidopsis thaliana] (TAIR:AT1G26360.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -0.113678369889134 -1.16289004433985 0.269743139293475 1 0.0325338517834814 2.24403545498213 -0.113678369889134 0.0901860154260607
AT3G21540_at 3.32914117357312 3.22718880500889 2.93961519107135 2.80987826606882 3.04505534733100 2.86563160653542 3.21403731536343 3.23852354586076 3.02183691217296 2.66803434763075 3.06828816942392 3.27200169745607 2.60990123627699 2.74683918651094 3.43822512068431 3.39889875759124 3.002340747593 2.8334519960033 3.03026778201635 0.193179983714682 0.186281394152342 0.199625443432384 0.189573233286664 0.186062906518644 0.188412415545685 0.19023983939575 0.185873992794955 0.194175959196484 0.187410959069494 0.189717726937078 0.185873992794955 0.197609225778462 0.189395736333052 0.185873992794955 0.190511682428517 0.189887226694864 0.187588562198046 0.187451044260877 3 3|0 -|/ 7586107 7587074 7586612.444 7585952 7590862 - gene protein_coding_gene FALSE TRUE AT3G21540.1 transducin family protein / WD-40 repeat family protein similar to TOZ (TORMOZEMBRYO DEFECTIVE), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G16750.1); similar to WD repeat-containing protein 3 [Homo sapiens] (GB:NP_006775.1); similar to PREDICTED: WD repeat-containing protein 3 isoform 1 [Macaca mulatta] (GB:XP_001113341.1); similar to U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) (ISS) [Ostreococcus tauri] (GB:CAL56834.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Dip2/Utp12; (InterPro:IPR007148) -0.0988236285987226 -1.16248249891933 0.269901638550009 1 0.0321107745363484 6.06011209529284 -0.0988236285987226 0.042396064952741
AT1G26290_at 1.99467249398387 2.20641822257926 2.24762352397180 1.98341560746877 1.74360677571269 2.05613157126347 1.5760436231856 2.02561878495565 1.71198135050963 1.71076089829439 2.08065349590705 2.02431276023291 2.04205097315629 2.05283194714576 2.40109007817914 2.00001059485737 1.98359688529918 1.76275436617123 2.14273904306834 0.184293854442734 0.182879780292323 0.18564231688308 0.184241470186577 0.18340948891632 0.181630268063850 0.183187653949250 0.186363829031714 0.184345021351093 0.181824033637864 0.183478108376626 0.182031993431651 0.182674784147840 0.188602529318366 0.181750427607213 0.180345625003246 0.193067582084498 0.180325618671289 0.189814120710993 1 1 + 9098040 9098503 9098250.091 9097971 9098654 + gene protein_coding_gene FALSE TRUE AT1G26290.1 similar to hypothetical protein LOC_Os10g23004 [Oryza sativa (japonica cultivar-group)] (GB:ABG66051.1) 0.122629147711294 1.16244650012303 0.269915642415944 1 0.0320734092278733 3.92847785951151 0.122629147711294 0.111406303848897
AT1G49880_at 2.92528074231932 3.10448249788679 3.68005051433541 3.78103275679644 3.60652798797626 3.92405187956701 3.05034496497256 3.81173650942920 3.57993148644986 3.73680521449885 3.50030877404871 3.14161721788005 3.34553940381445 3.58398980869972 3.29911750337772 3.88268415391078 3.71204100905194 3.14246812533549 3.77074635336494 0.235940006693014 0.23515865726191 0.238574843802622 0.238606339752676 0.230689200939466 0.246251135505865 0.228678471009202 0.241369700267218 0.228608884457502 0.232025932053418 0.235239707835105 0.229168291533373 0.230980502939909 0.23675955944828 0.235777679650698 0.228608884457502 0.233023663262347 0.238403377362150 0.2335911561924 1 1|0 +|/ 18467752 18469486 18468259.6 18467685 18469745 + gene protein_coding_gene FALSE TRUE AT1G49880.1 Erv1/Alr family protein similar to Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins (ISS) [Ostreococcus tauri] (GB:CAL57284.1); contains InterPro domain Erv1/Alr; (InterPro:IPR006863) 0.140048835380227 1.16207972307499 0.270058354537165 1 0.0316927595548647 7.05883769880341 0.140048835380227 0.147132006207146
AT3G14780_at 1.90144332155265 1.96755702417784 2.39579846050090 2.07623821322109 1.69670724876564 2.20237502069647 1.7394362972339 2.3055510520378 2.57061068828615 2.24360046230414 2.08651764893471 1.80410479503499 2.00771798497282 1.97247731956715 2.23154482081922 1.90110481604683 1.84771956170524 2.36730997606494 2.43792137354804 0.234854648629165 0.242964807106394 0.235274914634966 0.241894162104272 0.237468003000236 0.240526150334678 0.234604298321085 0.239382095708531 0.236933359588343 0.237894151426313 0.242807971631012 0.234604298321085 0.239169196729861 0.235894623639870 0.234604298321085 0.237103992105274 0.241263563720022 0.237288784767079 0.236439985571453 3 0|3 /|- 4961928 4963050 4962304 4961813 4963551 - gene protein_coding_gene FALSE TRUE AT3G14780.1 similar to ATGSL04 (GLUCAN SYNTHASE-LIKE 4), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G14570.1); similar to Os06g0728800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058646.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains domain UNCHARACTERIZED DUF605 (PTHR12741) -0.137891290303698 -1.16200621559423 0.270086963240419 1 0.0316164827984409 4.25798314149296 -0.137891290303698 0.142985004510088
AT1G56720_at 4.66830306761729 4.5663402567693 3.75418762049122 3.90063170338147 4.34641248517678 4.43926780881726 5.76832942420734 5.52406820528127 5.93268051226865 6.46913313513647 7.98808303377659 7.79956855818367 6.88543246163251 7.43324488232135 7.37949362825494 6.48758909778933 6.06219584021361 6.88156409927399 6.48766251472567 0.220677274819015 0.224910756741169 0.236514175012369 0.228652728923141 0.231321095615235 0.226523035944718 0.220053499043095 0.22508507389021 0.223827094364813 0.221667547390681 0.224223739226005 0.222530948399224 0.226097719184067 0.231530509148959 0.224598129908151 0.222880053447221 0.224368256745197 0.224363500217111 0.222889266439909 1 1|0 -|/ 21267317 21268005 21267648.5 21267085 21270033 - gene protein_coding_gene FALSE TRUE AT1G56720.1|AT1G56720.2|AT1G56720.3 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G09440.1); similar to Os01g0323000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042894.1); similar to putative receptor-like protein kinase 3 [Glycine max] (GB:AAU10525.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.101740468932483 -1.16182550862949 0.270157303478298 1 0.0314289836079582 11.3265118235799 -0.101740468932483 0.0547596854947551
AT4G23630_at 11.2777367269743 11.3808343600077 11.6652189371450 11.6869900044070 11.3436834217145 11.2443524008297 11.7193203010027 11.8115306904001 10.4673456877637 10.9154793664071 11.0786948704040 11.0157856636478 11.0863978892770 10.9463710556717 10.7219058325017 11.0731289943207 11.0957052024516 10.7609421500274 10.7687481068970 0.0709364992248417 0.0709364992248417 0.0720695008345856 0.0709364992248417 0.0726380725478928 0.0732018690301328 0.073390373223781 0.0774479501576501 0.0836859608086965 0.0715462626571203 0.0709364992248417 0.0709364992248417 0.0745222484618170 0.0779934637156528 0.0721961918784496 0.071550729509899 0.0819674327452704 0.0737690975428227 0.07240245592707 4 4|0 +|/ 12318807 12319545 12319075.125 12317071 12319947 + gene protein_coding_gene FALSE TRUE AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1) similar to BTI2 (VIRB2-INTERACTING PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT4G11220.1); similar to Os05g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056102.1); similar to Os01g0736900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044177.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB32723.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0964405375131678 1.16180252236287 0.2701662519177 1 0.031405134949294 22.3609871107986 0.0964405375131678 0.0297092618788014
AT4G03210_at 2.6745630168865 3.34929892961149 1.68790216896617 1.67852584592507 1.79662545867155 2.37173282801999 2.60112019518947 2.98293031500652 4.40044843950532 3.74795446450217 5.47762352888857 4.90559519172272 4.4547333571968 5.63452620512624 7.08782698747293 4.27814471181979 3.21061332902157 4.98634504801022 4.71408824680762 0.262737477611303 0.257524871632334 0.282531759566154 0.286390163078959 0.27409576698923 0.260813743105285 0.262678103339885 0.262114875052456 0.259321998365459 0.252583200257519 0.253744079553825 0.256416108736250 0.25984143721018 0.270840386132509 0.270881004870087 0.25989538083817 0.265164972694997 0.254419573449831 0.267676272500332 4 4 + 1416516 1417159 1416901.273 1415949 1417352 + gene protein_coding_gene FALSE TRUE AT4G03210.1|AT4G03210.2 XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9); hydrolase, acting on glycosyl bonds encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers. Identical to Xyloglucan endotransglucosylase/hydrolase protein 9 precursor (EC 2.4.1.207) (At-XTH9) (XTH-9) (XTH9) [Arabidopsis Thaliana] (GB:Q8LDW9;GB:Q9ZR10); similar to EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G13870.1); similar to xyloglucan endotransglycosylase/hydrolase [Brassica rapa] (GB:AAV92081.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713)|similar to EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G13870.1); similar to xyloglucan endotransglycosylase/hydrolase [Brassica rapa] (GB:AAV92081.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.150676272071076 -1.16161765404735 0.270238228676023 1 0.0312133438635829 7.03879889237412 -0.150676272071076 0.16705682271595
AT1G50520_at 2.82160443281696 2.3134918531223 2.49194899466216 2.71481085605869 2.83862312661853 2.53954969562471 2.32554585643247 2.37132843816775 2.55453494788672 2.42021032585219 1.90398228528934 2.46831270355238 1.99802472688542 2.02410280647159 1.83911686053934 2.08119888609737 2.22460023097557 2.02408478594623 2.53092155308542 0.203354943334413 0.209732911690740 0.207727915331419 0.201851765131716 0.20954040255232 0.207369707036995 0.195445580116114 0.199289933694723 0.205735503911855 0.194763623716426 0.198571357847789 0.200342957894855 0.207958620100078 0.194763623716426 0.198162748655575 0.19848264858072 0.207740072044871 0.208732737248997 0.196879794053464 1 1 + 18724210 18724660 18724421.909 18723046 18724887 + gene protein_coding_gene FALSE TRUE AT1G50520.1 CYP705A27 (cytochrome P450, family 705, subfamily A, polypeptide 27); oxygen binding member of CYP705A similar to CYP705A25 (cytochrome P450, family 705, subfamily A, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G50560.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.121610254224487 -1.16146366222681 0.270298195422413 1 0.0310536032501564 4.83827133318516 -0.121610254224487 0.109365449529429
AT1G32260_at 4.7086668356006 4.53578220430622 4.36098008270264 4.36367438433676 4.01235070322595 4.24340471717331 3.00650120056899 3.83563622527947 3.42088580372691 3.47551947286664 3.50337531402270 3.43928864669152 3.33873809912293 3.44610524510812 3.49756898334808 3.73788547460054 3.80304681630528 3.29273744191901 3.44123199509322 0.223128790402670 0.219548093283151 0.223589882079739 0.220527701154895 0.226868513113632 0.229382196632382 0.223727565966735 0.223409982517541 0.223897837157893 0.228137086330747 0.221871163651056 0.224033614418824 0.222374250721095 0.220950271491725 0.220849349469414 0.219184383918228 0.224805646404821 0.220981864682779 0.230346659802549 1 1 - 11640820 11641694 11641213.273 11640562 11641851 - gene protein_coding_gene FALSE TRUE AT1G32260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35480.1); similar to Os02g0127900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045765.1) 0.142460008749181 1.16119538286960 0.270402692356737 1 0.0307753470677898 7.60998571575026 0.142460008749181 0.151928512674361
AT4G18395_at 1.00291618288031 0.869650039309956 1.24900992700049 0.838963273925396 0.604711203989839 0.593766598734124 0.727792891883098 0.93025234624294 1.12709468495674 1.08320890533085 0.909355655292519 0.701029135668375 0.97346352109487 1.12304472364613 1.36898017328928 0.857013006649689 1.00388773908569 1.25395366111119 1.34137725294036 0.170496406172262 0.170496406172262 0.180137110832431 0.177918820978508 0.177576811518066 0.174589484030250 0.175320036080632 0.179022914975501 0.174938473297294 0.174875041818062 0.182780777069385 0.176134076169624 0.189098928880694 0.174663729024077 0.177050598224911 0.172970714035019 0.177837694982922 0.186616469812715 0.187524945075617 4 4 + 10169488 10169801 10169647.545 10169455 10169941 + gene protein_coding_gene FALSE TRUE AT4G18395.1 unknown protein -0.110546388298106 -1.16105993224480 0.270455463464091 1 0.0306348778791868 1.95600009119029 -0.110546388298106 0.0824524639610445
AT1G23100_at 2.86443465600799 2.74214127179513 2.57195323919920 2.73774408433449 2.30128109459411 2.02246313283273 2.50355953522759 2.65349714695701 2.39203835101673 2.46242531422307 2.18052221850051 2.2621541213883 2.11768900033576 2.41151783330772 2.9494013926316 2.50546718103181 2.41336624434986 2.32595473805746 2.11350927766910 0.190557591520162 0.194007385236781 0.186889689559896 0.188312143374254 0.185714236295318 0.185714236295318 0.187728236788826 0.198456385693580 0.190946450342799 0.193835522961809 0.196763431458351 0.186625988529591 0.191776763930272 0.189224549943375 0.189080013498647 0.191259442639892 0.196131720017209 0.209211729387765 0.190651210572545 1 1|0 +|/ 8195873 8196299 8196096.889 8195765 8196464 + gene protein_coding_gene FALSE TRUE AT1G23100.1 10 kDa chaperonin, putative similar to CPN10 (CHAPERONIN 10) [Arabidopsis thaliana] (TAIR:AT1G14980.1); similar to 10 kDa chaperonin (Protein CPN10) (Protein groES) (GB:Q96539); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains InterPro domain GroES-like; (InterPro:IPR011032) -0.104723160596361 -1.16096429154984 0.270492729613689 1 0.0305357011315268 4.90884263953687 -0.104723160596361 0.065364059048932
AT1G09400_at 1.28878090267166 1.09190900975386 1.94061871353407 1.36200083906578 1.24551963879215 1.22252178937868 1.31573575994202 0.833389604229013 1.17742758251820 1.21726758656742 1.17216574201823 0.828466717692864 1.36398584641616 1.00893937464993 0.851787308582352 1.05959793274426 1.13223188371531 1.13388569998034 0.940900183014212 0.192897118119957 0.203507663600823 0.194191128551596 0.197267772933991 0.190996631524875 0.193126556549831 0.201048024165927 0.199034684874953 0.202208425073910 0.209989651256624 0.191666745217361 0.197709655858355 0.193936223990474 0.190996631524875 0.193431989112043 0.196558081013978 0.201314436565248 0.202434616885405 0.190996631524875 1 1 - 3033680 3034296 3033964.455 3033514 3035038 - gene protein_coding_gene FALSE TRUE AT1G09400.1 12-oxophytodienoate reductase, putative Identical to Putative 12-oxophytodienoate reductase-like protein 1 (EC 1.3.1.-) [Arabidopsis Thaliana] (GB:Q8GYA3;GB:O80523); similar to OPR1 (12-oxophytodienoate reductase 1), 12-oxophytodienoate reductase [Arabidopsis thaliana] (TAIR:AT1G76680.1); similar to OPR2 (12-oxophytodienoate reductase 2), 12-oxophytodienoate reductase [Arabidopsis thaliana] (TAIR:AT1G76690.1); similar to LEDI-5c protein [Lithospermum erythrorhizon] (GB:BAD06575.1); contains InterPro domain NADH:flavin oxidoreductase/NADH oxidase; (InterPro:IPR001155) 0.133614435950926 1.16095147704014 0.270497723059696 1 0.0305224133132321 2.37793337246667 0.133614435950926 0.134798797515520
AT4G21960_at 13.5112028765709 13.5683291612008 13.2190056765917 13.1942657259779 13.4581223067015 13.4355865057115 13.707935175731 13.7364580460433 13.1858889630777 13.6535995425164 13.9042350320740 13.9655053175445 14.3280860825942 13.9877208209849 13.9172986627184 13.7848519685186 14.0137842007072 14.2047732095845 13.7209508096868 0.0512002520176027 0.0493766395905835 0.0496088411973056 0.0504976734537905 0.0496073551805367 0.0504002663481424 0.0517376546215539 0.0510335023949536 0.0572217539454103 0.0502011509139487 0.0515445596843849 0.0506177172336267 0.0497381970924301 0.0527062417285384 0.0517247964993311 0.0491016702385575 0.0523429695618056 0.0518650797944529 0.0489782503327114 4 4|0 -|/ 11646683 11647582 11646988.2 11646186 11648474 - gene protein_coding_gene FALSE TRUE AT4G21960.1 PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxidase 21 (PER21) (P21) (PRXR5) [Arabidopsis thaliana] (TAIR:AT2G37130.1); similar to peroxidase (GB:AAA99868.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.0944496061364752 1.16054682049899 0.270655443206979 1 0.0301028681116768 27.2455773594499 0.0944496061364752 0.0124754217848630
AT1G66450_at 1.05233637612889 1.10576336382927 1.45174951910414 1.12371638450013 1.17914018348972 1.01071262118996 0.774774838162204 1.11734278849396 1.61743369061398 1.71946180047417 1.10407406926949 1.08959128302119 1.24710217009076 0.850479849481132 1.22458477531287 1.13719244964127 1.60381798809253 1.20124442492072 1.42073560912613 0.200313051289902 0.195558169743655 0.200721703285565 0.197572848821020 0.195096950596025 0.202377525395886 0.195096950596025 0.199089608914219 0.195096950596025 0.205284947365238 0.199248042790591 0.204687254365113 0.195096950596025 0.199592740508741 0.198024749595811 0.196095774052881 0.2080601791015 0.197527763618333 0.201875604998844 1 1 + 24791369 24791925 24791755.636 24789863 24791965 + gene protein_coding_gene FALSE TRUE AT1G66450.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62030.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G66440.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.112420410879302 -1.16036640841870 0.270725784360789 1 0.0299158539885643 2.48601096417904 -0.112420410879302 0.087590421800555
AT3G43220_at 8.45484905086089 8.48372809360468 8.9337401478241 8.8871050018338 9.15409517471552 8.5950163619245 9.20948782121361 9.16267041300111 9.0159664382407 8.97825591802875 8.99769740567519 8.54026450794853 8.8389457400594 8.71184751479803 8.45445412135185 8.89229748240472 8.65672876018894 8.7406002772841 9.08578369345168 0.161401076958625 0.155160011182295 0.155006208996563 0.153663574065270 0.152301975472797 0.157502977758949 0.152134506208948 0.154361645787556 0.159090651082341 0.161524034819350 0.157015132738615 0.155539311032624 0.157424631575271 0.171701805026848 0.161427740420504 0.152134506208948 0.165835597782115 0.163486978368405 0.156550841268347 3 3|0 -|/ 15208115 15209386 15208933.6 15207851 15214050 - gene protein_coding_gene FALSE TRUE AT3G43220.1 phosphoinositide phosphatase family protein similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G20840.1); similar to ATSAC1 (SUPPRESSOR OF ACTIN 1), phosphoinositide 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G22620.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G14205.1); similar to Os03g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049173.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) -0.116379440061060 -1.16006140598473 0.270844734792143 1 0.0295997406123478 17.7379730878494 -0.116379440061060 0.0975527766163028
AT4G21380_at 8.0178574806507 8.64209813603342 8.20361508513764 8.05311079531507 5.97902905178153 5.40342058321933 6.27015282303573 5.96531027970914 6.33341634130477 5.05926921106643 4.96135656394179 5.85707247188911 5.1492822095599 6.3914486563872 4.62922322256978 5.9407210575479 5.50740163363758 6.26700369303311 5.30307963062602 0.249748842644614 0.241305099677140 0.239539305829802 0.235698732031637 0.233515240232571 0.248787913287319 0.235847918480258 0.239958320809067 0.243765618106822 0.230093858980733 0.232440802710859 0.230516028152801 0.232042398690090 0.230093858980733 0.236556807189760 0.231337118052852 0.23624587418064 0.246475778795039 0.230979554566929 4 0|4 /|- 11389237 11389658 11389398.889 11388936 11393237 - gene protein_coding_gene FALSE TRUE AT4G21380.1 ARK3 (Arabidopsis Receptor Kinase 3); kinase encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G21370.1); similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to ARK2 (Arabidopsis Receptor Kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G65800.1); similar to serine /threonine kinase [Brassica oleracea] (GB:CAA73133.1); similar to receptor kinase 5 [Brassica rapa] (GB:BAB69683.1); similar to receptor-like kinase [Brassica oleracea var. acephala] (GB:CAA67145.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.145688586711066 -1.15991269133881 0.270902748085568 1 0.0294456314046901 12.6434211541453 -0.145688586711066 0.158284202279845
AT2G17340_at 9.33436239389608 9.37147462613886 9.32621931083761 9.38148280375964 9.6064984583421 9.25673133129134 10.2553846772827 10.1362153309856 9.1383928070491 9.8099985074698 9.69026304179867 9.72148434262029 9.93778694189192 9.78055764489167 9.22460749427104 10.0333463810095 9.94094953987585 9.76715088441632 9.81981966098119 0.093475180614242 0.0982765871753965 0.0976950500172522 0.0987264653051748 0.0939834332816403 0.0944727027656338 0.0994067148822197 0.0929287386084965 0.106545940901436 0.0952670086331601 0.102448444544115 0.0933969411152435 0.0964998386136414 0.0988626359133642 0.101401165065302 0.0928386958413259 0.0956142362939185 0.100328916421674 0.0954354946256819 2 2|0 -|/ 7548719 7549833 7549240.143 7548488 7551208 - gene protein_coding_gene FALSE TRUE AT2G17340.1 pantothenate kinase-related Identical to Protein At2g17340 [Arabidopsis Thaliana] (GB:Q949P3;GB:Q7XJS9;GB:Q8LCJ8); similar to pantothenate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35360.1); similar to pantothenate kinase-related [Arabidopsis thaliana] (TAIR:AT2G17320.1); similar to Os06g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057524.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52501.1); contains InterPro domain Protein of unknown function DUF89; (InterPro:IPR002791) -0.104505827835627 -1.15988436300563 0.270913800015799 1 0.0294162771804398 19.2592570877402 -0.104505827835627 0.0649749971640391
AT4G09990_at 1.00608405521085 0.652067547365675 0.776557513659717 0.902310611058455 1.11991833717306 1.12205518902106 1.30609933600838 1.01059998516266 1.66042950378989 0.800777446731541 1.56624019133072 1.44278292458932 1.33855157040116 1.51065302147125 1.75977775955902 1.31285061468280 1.32135319231369 1.24169477334739 1.14551485936386 0.212708597207137 0.211796702648201 0.213273044053241 0.212310435560101 0.210640263968051 0.214744693759880 0.211595321706635 0.212740718107676 0.211628487389896 0.210299737698419 0.209997023397317 0.209780001790724 0.209780001790724 0.211853533662183 0.210743439608613 0.212676090932546 0.211033347391808 0.215325311447337 0.221892174035412 4 4|0 -|/ 6259131 6259706 6259368.2 6258877 6260061 - gene protein_coding_gene FALSE TRUE AT4G09990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33800.1); similar to Os12g0204500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066378.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); similar to Os11g0242600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067591.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) 0.110497542229001 1.15952065511289 0.271055727265148 1 0.0290394464049314 2.30645087646099 0.110497542229001 0.082716863974073
AT1G69580_at 1.76221959854518 1.85119015027769 1.43749364510174 1.39063390882225 1.76853282718346 2.09034236793592 2.26387200714243 2.1124393871762 1.66841645730668 1.84162434723609 2.51432063025716 3.02712180745606 2.03895568851837 2.45084357909422 2.80186459974798 2.38749111449966 1.92675243507462 2.638981208718 2.30782838100999 0.194242610799966 0.196455244168291 0.196861083093031 0.201190948796143 0.192140906195872 0.199140162908240 0.193900819320474 0.193011105949853 0.203885954915713 0.196382078395642 0.195560882608597 0.196549831580765 0.198617805164786 0.201861767761267 0.199842251299294 0.194782359381034 0.207985909810811 0.197751483508388 0.199224207608531 1 1 + 26176590 26177240 26176922.636 26175606 26177275 + gene protein_coding_gene FALSE TRUE AT1G69580.1|AT1G69580.2 transcription factor| similar to MYR1 (MYB-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G18240.4); similar to Os03g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049984.1); similar to transfactor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83815.1); similar to Os05g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055886.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.104161027939318 1.15949437244751 0.27106598562425 1 0.0290122189294135 4.04088104224228 0.104161027939318 0.0639611565879165
AT3G48750_at 8.83781780524997 9.13692981344646 8.74802033362313 9.06838010540079 8.63198167302081 8.58721558566679 8.43193592630676 8.59373522988709 8.70974360935752 8.6381728798727 9.07935680558295 9.00008840077834 8.81713370222263 8.62669715184438 9.0461298867761 8.87156493484607 8.83901165767673 9.10614376593288 8.78866523348072 0.134067130736136 0.138157260113904 0.150782064874787 0.142841152871691 0.146834184918810 0.148294521347886 0.141480610419259 0.143544436832797 0.155372537939803 0.142302601391192 0.152104724312533 0.137387595279301 0.141680270460008 0.143583285735421 0.138070313423783 0.139565677177131 0.146031170658301 0.14796960343762 0.135632597549702 3 3|0 +|/ 18083813 18085235 18084385.6 18082521 18085626 + gene protein_coding_gene FALSE TRUE AT3G48750.1 CDC2/CDC2A/CDC2AAT/CDK2/CDKA;1 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype is reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Identical to Cell division control protein 2 homolog A (EC 2.7.11.22) (EC 2.7.11.23) (CDC2A) [Arabidopsis Thaliana] (GB:P24100;GB:Q9M307); similar to CDKB1,2 (cyclin-dependent kinase B1,2), kinase [Arabidopsis thaliana] (TAIR:AT2G38620.2); similar to cyclin dependent protein kinase homolog; similar to moth bean p34cdc2 protein, PIR Accession Number JQ2243 (GB:AAA92823.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.109933305671254 1.15936572843405 0.271116200914919 1 0.0288789572039824 17.5722319069641 0.109933305671254 0.0812217263534366
AT2G18340_at 2.25508984115578 1.69425019900337 2.07649902705798 2.10063665977362 2.0863274724182 1.94351554626152 2.06111072997851 1.83830036413568 2.47684259087403 2.02926762345024 2.15186102968756 1.88554425605194 2.33213513389514 2.47272423916143 2.31508102346481 2.20030232989053 2.20494278223593 1.99462459878539 1.62351148843186 0.183587717844925 0.183060763095860 0.182041056834714 0.179077212522042 0.182564492829402 0.178160895910628 0.183090609062323 0.179867814200206 0.180853261785181 0.179035051408602 0.182773718774249 0.182078839680413 0.182983466460674 0.178160895910628 0.184107514521879 0.181016571780763 0.183595281876460 0.199443063889083 0.185137775336532 2 2 + 7977535 7978083 7977743.091 7976402 7978196 + gene protein_coding_gene FALSE TRUE AT2G18340.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein similar to late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36600.1); similar to PvLEA1 protein [Polypedilum vanderplanki] (GB:BAE92616.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) 0.120500791352022 1.15917563932055 0.271190414195195 1 0.0286820654248261 4.1258958091724 0.120500791352022 0.107400383851748
AT4G16930_at 1.01243494705675 1.38845460831072 1.61150431700635 1.47680126509987 1.29256215806272 1.63348650125289 1.26678015705477 1.18153301088538 1.32601626169286 1.81220928479411 1.69908552521715 1.50610128143283 2.02516911669425 1.60730219682797 1.70261626523795 1.20607163257037 1.55644781324293 1.50055192559226 1.85258124797891 0.171934849240247 0.176331714192696 0.172221645818321 0.176075205702369 0.182127258278150 0.175377250067518 0.178671125133316 0.176725910915873 0.186828532814661 0.180976574850555 0.176046647280817 0.180808651909131 0.183573951622487 0.17290064566796 0.182025432112699 0.179567800419093 0.171934849240247 0.184802038355556 0.183452458157604 4 4|0 -|/ 9529740 9530109 9529889.3 9529583 9530134 - gene protein_coding_gene FALSE TRUE AT4G16930.1 disease resistance protein (TIR-NBS-LRR class), putative similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to disease resistance-like protein 9 [Brassica rapa] (GB:AAV88086.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.114051917154279 1.15909585420479 0.271221568085331 1 0.0285994323955722 2.98995486280314 0.114051917154279 0.092066411829225
AT4G14530_at 1.71947436513845 1.88991321011424 1.80132371599656 2.19825411011256 1.59151167124217 1.73380837360730 1.70706501252767 1.63102163019574 1.75709748716892 1.64635913676605 2.11947270124367 1.72377795466175 2.01003098229485 1.64728306360271 1.64796911832977 1.80615701921772 1.64302572707342 1.72789530030333 1.59547886536244 0.215830541558811 0.223862295111128 0.220365834908656 0.221067980391795 0.219577689066945 0.220569203181328 0.219890698121091 0.212874078554077 0.218969064199828 0.218241398999285 0.212873651431044 0.222095541636127 0.218750102617706 0.213803416043436 0.223342042520181 0.217057670144491 0.212586937822004 0.222308395980385 0.221303279661676 4 4 - 8343474 8343843 8343654.909 8343472 8343879 - gene protein_coding_gene FALSE TRUE AT4G14530.1 similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G46408.1) 0.109372783410361 1.15889289051544 0.271300832438250 1 0.0283892435076127 3.51255316767019 0.109372783410361 0.0797994226957321
AT3G29760_at 8.28695361831432 8.44762743867242 8.28033495739178 8.2682463019821 8.79344053428726 8.25772125394204 9.16239144097091 8.94358436233848 8.26780096886213 8.4334907917128 8.78009844542659 8.58796167129971 8.76916765169708 8.56197603722094 8.19152752557924 8.80395368947514 8.49364102136711 8.496492411733 8.83866863916397 0.142642920784009 0.137594874314023 0.139289188090524 0.147192640999831 0.143411443593048 0.147574034848810 0.140457955240213 0.137011382937871 0.151938485203891 0.148098819023616 0.145544969878825 0.137011382937871 0.147343435242831 0.157543541894627 0.154958737845982 0.137011382937871 0.152939816251112 0.152322925807529 0.142317302188172 3 3 - 11592282 11593142 11592804.778 11591984 11594312 - gene protein_coding_gene FALSE TRUE AT3G29760.1 NLI interacting factor (NIF) family protein similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT2G36540.1); similar to unknown protein [Sorghum bicolor] (GB:AAM47581.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.118960639847340 -1.15881113455923 0.271332766092045 1 0.0283045850938243 17.104498708473 -0.118960639847340 0.103952986882523
AT3G02130_at 6.82621176452989 6.67365026492823 6.29722315585521 6.58350327032024 6.99869367337014 7.10409479282054 6.77035597248216 6.80016210860337 6.93887467467831 6.60354632430248 6.8579427010007 6.77252070404147 6.76861039854721 6.55877960720033 6.31214902511083 6.91402750404682 6.73099719607563 6.50064118275460 7.03957767222044 0.151144815118229 0.146799688768564 0.157657192512475 0.151642347795262 0.147616089252148 0.147415045225493 0.153505510658389 0.152000213591366 0.155337180201144 0.149920991532856 0.151664739863752 0.144638730537316 0.14771817773667 0.145707446019482 0.151476907463757 0.146533111485838 0.149593494350757 0.155569420461456 0.143909058567971 3 3 + 383637 384115 383894.273 381226 384449 + gene protein_coding_gene FALSE TRUE AT3G02130.1 leucine-rich repeat transmembrane protein kinase, putative similar to RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G69270.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72006.1); similar to Os07g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060207.1); similar to putative protein kinase [Sorghum bicolor] (GB:AAM47583.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.102711994215459 -1.15878134805475 0.271344401350418 1 0.0282737422562619 13.5255492571542 -0.102711994215459 0.0592517326476829
AT2G26920_at 6.69093363578043 7.03108294726596 7.16547023050326 7.1910800848354 7.30741304406544 7.08042399717894 6.87488707088047 6.78514642068926 7.0087951842479 6.67480610291094 6.31402666985926 6.50635798950395 6.5859625247937 6.2613099662273 6.16214895434818 6.3886434576201 6.61034366233388 5.83329646307318 6.97732188181867 0.203217795456988 0.194403394601687 0.204544471910648 0.199414142077117 0.195283669353178 0.213834047086436 0.194403394601687 0.200949226361218 0.194403394601687 0.199524658334674 0.196809354379289 0.194403394601687 0.195808144810177 0.206067317802374 0.213500196643240 0.195487999701684 0.200411968010770 0.202832090455323 0.201917952798295 2 2 + 11498088 11498583 11498282.636 11496082 11498829 + gene protein_coding_gene FALSE TRUE AT2G26920.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12120.1); similar to Calcium-binding EF-hand; UBA-like [Medicago truncatula] (GB:ABE81075.1); similar to Os05g0409000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055525.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.106814429098748 -1.15836189417489 0.271508290639769 1 0.0278394772905303 13.6256724792144 -0.106814429098748 0.0725870624902712
AT4G20060_at 2.98355245131590 3.07688056107930 3.40749393073888 3.39731165171807 3.44909133452441 3.13359187832368 3.51328995757407 3.25718328582711 3.04265593570406 3.12056384021010 3.11901986407015 2.40278859411846 3.2089048794903 2.96728826100812 2.34891530094526 3.60385184811184 3.16728952091482 2.95566123878465 3.80922099516648 0.202947563406015 0.203914493827713 0.204689254080272 0.207259960233928 0.205552119183690 0.208588596969756 0.202311584500099 0.203375808495591 0.207420352821622 0.207093209367007 0.216094891907632 0.213631858635764 0.205115963290709 0.202341930770826 0.206875218666343 0.204434168245846 0.201771691853801 0.205625290734228 0.202628420476519 4 4 - 10854824 10855367 10855124.364 10854800 10859340 - gene protein_coding_gene FALSE TRUE AT4G20060.1 EMB1895 (EMBRYO DEFECTIVE 1895) similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44829.1); similar to Os01g0103700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041758.1); contains domain ARM repeat (SSF48371); contains domain FAMILY NOT NAMED (PTHR13322); contains domain gb def: Hypothetical protein AT4g20060 (PTHR13322:SF2) -0.106643175192965 -1.15799783973439 0.271650596982986 1 0.0274626651520821 6.42523031244968 -0.106643175192965 0.072175278801794
AT3G23980_at 7.26682414878415 7.23713359480952 7.14360407871833 6.67587866276526 7.12193919830628 7.12422530109458 7.20019965217843 7.27139160018469 6.78810510536164 6.52820157159701 6.97237696652869 6.99067406281138 6.27561728086841 6.58357161712745 7.0639471207177 7.02868941888205 6.40175114949787 6.65642797759212 6.90175467433916 0.177309455469604 0.183339393845615 0.185879193133774 0.180387292288026 0.177495364468389 0.176648909909700 0.181032771929338 0.183042170381927 0.189540063222193 0.182476101606435 0.187467131901442 0.176648909909700 0.181273696872912 0.180961510082400 0.180073386676949 0.183364175291013 0.197178887180328 0.178320902364887 0.181811770202636 3 3 - 8662799 8663800 8663392.667 8662440 8667759 - gene protein_coding_gene FALSE TRUE AT3G23980.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to heavy meromyosin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72706.1); similar to Os01g0911800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045163.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.110098636640407 -1.15796545054336 0.271663260517505 1 0.0274291453112737 13.8731423961147 -0.110098636640407 0.082036328091754
AT1G50930_at 0.661847376075419 0.929355675985823 1.20438425251142 1.15194654711293 0.675303018964794 0.92604868970582 0.702581725530691 0.876627418594357 1.27703183613534 0.95999318314503 0.856422923137343 0.55989545281809 0.368888399037641 0.81203947025063 0.414379695059885 0.650296586075551 0.602702722374362 1.21175322947288 1.04417644588598 0.190918936141700 0.194002540507136 0.197048785892756 0.194353407311666 0.188145881587707 0.192365428558195 0.192896631370151 0.193792578833443 0.19465844142174 0.194438804331355 0.191714693796168 0.192028335849033 0.196920922774525 0.194756711654165 0.196405561200249 0.188145881587707 0.205507732994317 0.2008054740833 0.192671665049163 1 1|0 +|/ 18880568 18881339 18880910.6 18880505 18881512 + gene protein_coding_gene FALSE TRUE AT1G50930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20557.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91163.1); contains domain UNCHARACTERIZED (PTHR23140:SF6); contains domain UNCHARACTERIZED (PTHR23140) -0.106184466958323 -1.15788844992045 0.27169336809513 1 0.0273494596033078 1.78015240381036 -0.106184466958323 0.0708205355212908
AT3G27570_at 8.1632018945774 8.19024290608943 8.37238048344764 8.49675148294022 8.10822065489881 7.9652144503459 8.79563470210437 8.63435133303938 7.5663963286878 8.10600817733002 7.73696726083601 7.7769821700302 7.72853015905962 7.75815639648986 7.36122496081554 8.00202643564955 7.94468593708407 7.80029565720131 7.5794526798622 0.176133535269893 0.164769018403243 0.164351798922388 0.168917712260179 0.168916628301577 0.168527001552946 0.171087621946187 0.163505090662065 0.167930584270971 0.157426744638704 0.168240204619230 0.168210479877054 0.161068286836914 0.169622465106492 0.161544319112347 0.168574260152086 0.169776819838713 0.161828693593315 0.157740044260376 3 3|0 -|/ 10215531 10216646 10216068.9 10215233 10217973 - gene protein_coding_gene FALSE TRUE AT3G27570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40510.1); similar to Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum] (GB:AAB33256.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Sucraseferredoxin-like; (InterPro:IPR009737); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.09861319042937 -1.15767793455078 0.271775693838259 1 0.0271316239976123 16.0978635804833 -0.09861319042937 0.0433198588987685
AT1G57700_at 2.83131531581947 2.76087717765102 2.64634702392672 3.00656708693616 2.58865384249024 2.48093083738042 2.76331722333416 2.82840272642318 2.74624268218548 2.97799567997073 3.75033762244940 3.43564442990451 3.28322499918323 2.98150081979647 3.45039933875706 3.49953972086667 2.55642611360725 2.8793758145386 2.98873360121395 0.191272352222543 0.192629621936435 0.197141388831364 0.196951384125634 0.196807686643975 0.196967894244446 0.193345869462997 0.192655424699855 0.208999399048976 0.194785272505461 0.198417026136428 0.194890835652854 0.190667325241070 0.196406740352418 0.199875915787346 0.197670005487028 0.196100367995123 0.192906380259146 0.194992323226432 1 1 + 21376914 21377493 21377150 21374716 21377525 + gene protein_coding_gene FALSE TRUE AT1G57700.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G09600.1); similar to Os08g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060831.1); similar to transposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96101.2); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.104939353237135 1.15719493661762 0.271964652412556 1 0.0266319450319743 5.80524145183415 0.104939353237135 0.0671488653827686
AT1G26370_at 5.27595936363905 5.45910067336422 5.14767542772774 5.40401194334447 5.62503699623207 5.55720432714047 5.74538315436913 5.49052834964968 4.3183099613131 3.92417476354318 4.58444992004399 5.00737037073229 4.51894017726365 4.13371837053125 4.31242475602727 4.81898552800084 4.39881098624604 4.49689519836696 4.5443675003827 0.230392395964901 0.229442514794917 0.236550338407461 0.227184471063756 0.234503816792383 0.233697925486801 0.226318712926035 0.2295747832877 0.249033472797356 0.229722010579353 0.236012108156708 0.230301207223432 0.226318712926035 0.229182954962911 0.232350225987289 0.226318712926035 0.242333758234502 0.232976042207679 0.231644881994436 1 1 - 9122020 9122867 9122373.727 9121479 9125544 - gene protein_coding_gene FALSE TRUE AT1G26370.1 RNA helicase, putative similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to putative RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD35264.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.106202313338772 1.15707947572746 0.272009838261742 1 0.0265125200993005 9.86122927367395 0.106202313338772 0.0711002812400525
AT3G09880_at 5.73662414929435 6.06474474252845 5.52005780097022 5.38467856872426 5.95909312802255 5.84754180134546 5.354773184891 5.87935512519847 5.88543927584328 5.51563397656224 5.88117321904038 5.73664019351875 5.69218506385981 5.26336380709943 5.64063777804761 5.77549072378948 5.31106604840652 5.20200402378282 5.7762956811361 0.253174397134874 0.253789301396546 0.25119873795001 0.259780608167393 0.255434248895608 0.264351301608838 0.257895254055710 0.264043136904154 0.264172511494841 0.254197413547821 0.262798661161452 0.249987722580406 0.257976393628804 0.264094273103148 0.252680071741545 0.254171294929902 0.271261807541869 0.256653791137876 0.249717622359097 3 3 + 3030840 3031874 3031232.455 3029516 3032261 + gene protein_coding_gene FALSE TRUE AT3G09880.1 ATB' BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime beta); protein phosphatase type 2A regulator Encodes B' regulatory subunit of PP2A (AtB'beta). Identical to Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform (PP2A, B' subunit, beta isoform) (AtB' beta) (B'BETA) [Arabidopsis Thaliana] (GB:O04376); similar to ATB' ALPHA (PP2A, B' subunit, alpha isoform), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT5G03470.1); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to Os03g0681800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050908.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.12200050651661 -1.15695162549367 0.272059879553489 1 0.0263802910789256 11.3626634384753 -0.12200050651661 0.111297234404887
AT1G76810_at 7.6622776346965 7.66819754538444 7.59509047900759 7.70351759560375 7.77420175978526 7.34833989363978 7.65339729797 7.54166574749822 7.37346515711815 7.47260791412676 7.89869116064468 7.81756619998616 7.45914025423158 7.43748430262955 7.79403729154595 7.78325565016262 7.4874510294223 7.16837594228012 7.24096904630879 0.161023081187208 0.167180617640946 0.165850636289908 0.161791167811610 0.171361258862805 0.172937900510755 0.162985323617123 0.178534369584704 0.180523437410735 0.163075311176083 0.168324272468133 0.163777663603463 0.166981978622638 0.171489533530999 0.16395553257953 0.162806779362399 0.175631843883684 0.179160204206646 0.168615299223257 1 1|0 -|/ 28836415 28837055 28836765.333 28835900 28841480 - gene protein_coding_gene FALSE TRUE AT1G76810.1 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G21160.1); similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76825.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor [Pisum sativum] (GB:AAN32916.1); similar to putative translation initiation factor IF-2 [Oryza sativa (japonica cultivar-group)] (GB:AAT44302.1); similar to GTPase [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_569115.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.108652865983387 1.15627797448409 0.272323669183046 1 0.0256837521800841 15.1023847948886 0.108652865983387 0.0784748527210376
AT3G21055_at 12.9631308870911 13.1214949432684 12.6711534417272 12.6679107453107 12.8909270808266 12.8776384526700 13.2884848385953 13.3720861791543 13.7978491358546 13.6382459771082 14.0049219203446 14.1059786263927 13.6229148746162 13.9073300816087 14.0156481309694 13.835818837708 13.5037813993995 14.0222292935420 13.5448720246376 0.0654260298592359 0.0654573907266836 0.0736876086559873 0.0682281159247833 0.0663982819792566 0.0726908231851781 0.0655008393834146 0.0657625054225428 0.0686109481398269 0.0634669742563704 0.0637923260784655 0.0634669742563704 0.064311431179758 0.0659979868862916 0.065438495660105 0.0634669742563704 0.0688214871519246 0.0634669742563704 0.0648978902257033 3 3 - 7376767 7377054 7376886.909 7376641 7377192 - gene protein_coding_gene FALSE TRUE AT3G21055.1 PSBTN (photosystem II subunit T) Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc). Identical to Photosystem II 5 kDa protein, chloroplast precursor (PSII-T) (Nuclear encoded psbT) (PsbTn) (PSBT) [Arabidopsis Thaliana] (GB:Q39195;GB:Q41925;GB:Q9LJC7); similar to photosystem II 5 kD protein [Arabidopsis thaliana] (TAIR:AT1G51400.1); similar to unknown [Brassica rapa] (GB:ABD91572.1) -0.0961931327605665 -1.15625437396577 0.272332914345527 1 0.0256593554286513 26.7504284584668 -0.0961931327605665 0.0310802809282759
AT3G12530_at 2.76889841127065 2.39378160907105 2.6641245124601 2.65881413390229 1.92425912025071 2.59366217754923 2.30086230375402 2.67990435658096 1.92168434014063 2.26284137635690 1.38610799553222 2.33709868808306 2.07255673488565 1.75188614745117 2.26797396852138 2.18392016265528 2.02476908467154 1.85386993363861 2.38187272206334 0.197353261114293 0.191988984513943 0.192408823141768 0.197890369258198 0.194447031006766 0.195547312523575 0.194836993881381 0.195565661473623 0.201369253964696 0.198761186798530 0.199089514583344 0.193402053953434 0.201131228200464 0.193103288387919 0.192787673115789 0.193128836421681 0.204901113222740 0.194144016054577 0.191988984513943 3 3|0 -|/ 3972813 3973699 3973324.125 3972353 3974202 - gene protein_coding_gene FALSE TRUE AT3G12530.1|AT3G12530.2 Identical to DNA replication complex GINS protein PSF2 [Arabidopsis Thaliana] (GB:Q9C7A8;GB:Q5EAG9;GB:Q9LHF6); similar to At3g12530-like protein [Boechera stricta] (GB:ABB89770.1); contains InterPro domain GINS complex, Psf2 component; (InterPro:IPR007257) -0.139836662109504 -1.15609215367138 0.272396468443636 1 0.0254916724426481 4.58482448757995 -0.139836662109504 0.148112364817685
AT4G02290_at 0.940337033148792 1.20098423881364 1.30441347810904 1.13621381588162 0.930407371696852 1.24231328216058 0.910321239180202 1.43738270809873 1.09733129204920 1.39740994793089 1.76317669978381 1.93058175960983 1.54386701580100 1.24428674137478 1.56994701602162 1.40472165116263 1.10949083231816 1.68703302351453 1.44153036092150 0.211208915531328 0.211208915531328 0.213384550554267 0.215952608851864 0.213434333156632 0.212783024677171 0.211208915531328 0.224762619014730 0.211208915531328 0.218892068234093 0.217972122914725 0.214882379787014 0.220820638416602 0.212715626642731 0.216012915876904 0.211208915531328 0.215096080253749 0.225824503835692 0.220732157403524 4 4 - 1002703 1003477 1002936.455 1002394 1005253 - gene protein_coding_gene FALSE TRUE AT4G02290.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 17 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 17) [Arabidopsis Thaliana] (GB:O81416); similar to ATCEL2 (Arabidopsis thaliana Cellulase 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G02800.1); similar to endo-1,4-beta-glucanase [Pisum sativum] (GB:BAA85150.1); similar to endo-1,4-beta-glucanase precursor (GB:AAA80495.1); similar to Endoglucanase 3 precursor (Endo-1,4-beta glucanase 3) (OsGLU8) (GB:Q8LQ92); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) 0.125314120483056 1.15582710011804 0.272500335138780 1 0.0252177319943577 2.55966095892726 0.125314120483056 0.118805169024044
AT3G55620_at 9.27402017503669 9.37956289598912 9.48999248720895 9.34437847523075 9.40155531457478 9.35280810842767 9.38120880509226 9.45134524604978 8.5075225808453 8.78048900612851 8.75046788158176 9.104189326379 9.07916555666753 8.89012463068565 8.8184500834808 8.84567992393023 8.75334214701708 8.69177122562368 8.80857965176629 0.122298245663109 0.122186821777507 0.122165067965096 0.125867908079301 0.124721424986517 0.124392579042623 0.121091170577034 0.121457700715591 0.131796953997802 0.122245186855240 0.120727171723141 0.119183075577065 0.118045312914243 0.121306627026331 0.123539191333665 0.118472491207980 0.118045312914243 0.135476874258045 0.118045312914243 3 0|3 /|+ 20646042 20647187 20646829 20645181 20647485 + gene protein_coding_gene FALSE TRUE AT3G55620.1 EMB1624 (EMBRYO DEFECTIVE 1624); translation initiation factor similar to eukaryotic translation initiation factor 6, putative / eIF-6, putative [Arabidopsis thaliana] (TAIR:AT2G39820.1); similar to Os07g0639800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060417.1); similar to putative eukaryotic translation initiation factor 6 [Trifolium pratense] (GB:BAE71264.1); contains InterPro domain Translation initiation factor IF6; (InterPro:IPR002769) 0.096717208246297 1.15578735628685 0.272515912246032 1 0.0251766597405878 18.1671152350350 0.096717208246297 0.0344540131389426
AT1G78370_at 11.285701480935 11.3317388974885 10.3554318240944 10.3267212160132 10.5285267203507 10.4681937265127 11.5198276261609 11.8701219097752 10.3048876436771 11.8112880501470 12.1306738226802 12.2317421902268 11.8122673076133 12.1196725227060 11.9505178056059 11.6156471957609 11.7051675841644 12.0773143079930 11.1233148090490 0.0836683454511937 0.0805069719207487 0.0833241788696801 0.0842847802416104 0.0819574261054858 0.082641196911224 0.0816619514617997 0.0809450926424456 0.0971695347263238 0.0824734430856691 0.0840061375183639 0.0804623425082474 0.0804623425082474 0.0832313302684411 0.0852803754577827 0.0804623425082474 0.0855133128171045 0.0804623425082474 0.0812405230697832 1 1|0 -|/ 29489361 29489964 29489697.1 29489162 29490183 - gene protein_coding_gene FALSE TRUE AT1G78370.1 ATGSTU20 (Arabidopsis thaliana Glutathione S-transferase (class tau) 20); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G78380.1); similar to glutathione S-transferase [Brassica napus] (GB:ABD36807.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.103291966188856 -1.15560054446874 0.272589140170300 1 0.0249836182580089 22.4783856800254 -0.103291966188856 0.0622251001740852
AT1G63190_at 0.343523899447521 0.500765628937691 0.423928446847552 0.127833284976426 0.295753562909472 0.0830763674738551 0.594663414316407 0.277842951309160 0.476308039953253 0.253682956769323 0.209264441139455 0.611870453352297 -0.105994466052597 0.163950400495262 0.280055934597093 0.171967605893193 0.430556950061112 0.395830937614367 0.161773187219417 0.196984957333701 0.203505070826830 0.19740750956768 0.196984957333701 0.197720584388532 0.196984957333701 0.200645859037808 0.200295326055628 0.201387681260342 0.207239497220574 0.198290794383025 0.196984957333701 0.210180597115337 0.201570980666861 0.201792952612901 0.197097003927067 0.21322720724244 0.203451380797838 0.197486402727501 1 1|0 +|/ 23435636 23436641 23436042.2 23435500 23436667 + gene protein_coding_gene FALSE TRUE AT1G63190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63200.1); contains InterPro domain Arabidopsis thaliana cystatin-related protein; (InterPro:IPR006525) -0.112059001897005 -1.15540132222517 0.272667249770177 1 0.0247777787564667 0.614394699586354 -0.112059001897005 0.087901566168216
AT3G14100_at 9.92745944123763 9.99071231338498 9.76997878992918 9.84465253071999 10.1323589697798 10.0432458838607 9.7051069159234 9.95706477598145 9.77559828525823 9.82574592581845 10.0553666020442 9.86051528649482 10.0389132005413 10.0547345565313 9.91406175196206 10.0891178224945 10.0611538623170 9.8624386140825 9.93354620893338 0.0829350224236455 0.0849358980556277 0.0895856917994156 0.0889925038009424 0.0829031278994894 0.0846795145889537 0.090292963647627 0.0845672566645474 0.0884944973813736 0.083256020303761 0.080884560302022 0.0858781859713815 0.0822584183654292 0.082931381439004 0.0856008763820556 0.080884560302022 0.0824994674964108 0.0819792639672826 0.0859488437164758 3 3 + 4675003 4675929 4675621.636 4672926 4676169 + gene protein_coding_gene FALSE TRUE AT3G14100.1 oligouridylate-binding protein, putative similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to UBP1A, mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G54080.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0997737103311647 1.15533903344214 0.272691675089247 1 0.0247134265856406 19.8398230452997 0.0997737103311647 0.049252524399795
AT2G31820_at 8.12941626157286 8.34771170753273 8.24845875139857 7.92402586081263 8.95174817867804 8.1632795232079 8.47643290408487 8.25855187479302 8.48559218455066 8.32250387946424 8.20142040096592 8.21049070164421 8.1794313554567 8.41051370524438 7.55769100990825 8.48158014969504 8.0371823739145 8.13007016083255 8.5677970317781 0.187044598817354 0.183314699549953 0.192339762546994 0.195692391448005 0.189287806681104 0.188676338926333 0.193500261687858 0.183273524941300 0.199275378566963 0.182429436512938 0.1796286487281 0.178520632939361 0.190545952888465 0.178520632939361 0.202939216516675 0.178520632939361 0.197175652792762 0.190381176907466 0.181054887326109 2 2 + 13539127 13539574 13539369.636 13537427 13539639 + gene protein_coding_gene FALSE TRUE AT2G31820.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G05640.1); similar to Os08g0542700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062394.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08980.1); similar to Os09g0518500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063687.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.144366829097443 -1.15525611814626 0.272724191341542 1 0.0246277687367117 16.6172923898294 -0.144366829097443 0.156904815449831
AT3G52105_at 7.57576810420428 8.02528123214064 7.27852335660287 7.53203327018023 7.99213380372781 7.9460290533905 7.32313520306933 7.58026920709815 7.2850873061853 7.00472962590603 7.29603547649091 7.61896336871911 7.45114807660081 7.58707742377072 7.26013722530278 7.6157940233704 6.9703037772552 7.49691749951977 7.42783325180194 0.149190212507998 0.137982988793608 0.149459546080268 0.134447669265937 0.135880531446271 0.152426866645731 0.161777767435036 0.134221257266985 0.138025891382939 0.151792385926917 0.142662031934616 0.134221257266985 0.14567207517126 0.134447823176397 0.136546851833061 0.140392414315964 0.138728594872538 0.141278483133297 0.136790892008022 3 3 + 19334383 19334527 19334455 19334310 19334805 + gene protein_coding_gene FALSE TRUE AT3G52105.1 similar to putative protein [Medicago truncatula] (GB:ABE93778.1) 0.116948407630771 1.15516508730540 0.272759893693338 1 0.0245337323165337 14.9822785722233 0.116948407630771 0.100098753761364
AT1G07080_at 10.5703276068555 10.7627139407960 10.7656813858681 10.9347588315198 10.7780322772197 10.7382154843200 10.7270052123723 10.979177948149 10.6440571736872 10.7358188307499 11.0070635967422 10.8007595987938 11.0754782671534 10.8318644698454 10.7905115260969 10.9118826479140 10.7571822455573 10.8209886458222 10.7564909354508 0.0856439975449858 0.0797688854899682 0.0809954257352012 0.082890453181031 0.0800869007556296 0.0820963322396101 0.082747905219628 0.0827555723741488 0.0938962933308645 0.0823020465107502 0.085271235874813 0.0796570491962492 0.0809230194537852 0.083571543483567 0.0894966186397156 0.0793478949245498 0.088828371453994 0.0890099848847298 0.0806618205794792 1 1|0 +|/ 2170272 2171827 2171077.1 2169981 2172193 + gene protein_coding_gene FALSE TRUE AT1G07080.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to OSH1 (OAS HIGH ACCUMULATION 1), catalytic [Arabidopsis thaliana] (TAIR:AT5G01580.1); similar to Os03g0295800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049827.1); similar to Gamma interferon inducible lysosomal thiol reductase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95437.1); contains InterPro domain Gamma interferon inducible lysosomal thiol reductase GILT; (InterPro:IPR004911) 0.103354939566705 1.15512283825031 0.272776465039447 1 0.024490090241141 21.5752834299059 0.103354939566705 0.06258173244351
AT1G04000_at 4.44720625532798 5.05263586533978 3.85803690833076 4.10038307454453 4.26229463012999 5.12414244752062 4.43663519586677 5.31253819708137 4.84928092268695 4.65744458772819 5.32201453697027 5.1063985291728 5.28175465616949 5.18294398174541 4.69476899874074 5.05186722077506 4.49147297757235 4.19522787081882 4.96953269896555 0.187837432983834 0.183393295182299 0.186059985535715 0.183532642056662 0.182966602930546 0.191990507489999 0.184891396124775 0.182430584718985 0.190471639569826 0.185056842637558 0.182430584718985 0.182430584718985 0.184777757597493 0.188740130439041 0.186141403604193 0.182430584718985 0.185620491925678 0.185991759072209 0.185073037082721 1 1 - 1028460 1028820 1028639.455 1028105 1029118 - gene protein_coding_gene FALSE TRUE AT1G04000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44060.1); similar to Os02g0621600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047462.1); similar to hypothetical protein LOC_Os10g33360 [Oryza sativa (japonica cultivar-group)] (GB:AAP54238.2); similar to hypothetical protein [Oryza sativa] (GB:AAG16859.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.192826459951890 -1.15500860375744 0.27282127517134 1 0.0243720953565271 9.44484682157898 -0.192826459951890 0.240742885925989
AT3G59000_at 5.32891781044809 5.53576881615357 5.04522446538228 5.21153702706396 5.62300072229214 5.56660380944278 5.15259905154673 5.43500803908182 4.8041589565471 5.18254789658631 4.7903211959724 4.52774301989525 4.77337037312442 4.89371444429855 4.34638772354626 4.85329452983337 4.93336359663557 4.78390742297848 4.85172043233723 0.200693697549985 0.189716538633680 0.195979636731799 0.195527009603448 0.189417274764454 0.201791011336312 0.201473101736708 0.202344375943229 0.196031625699182 0.189140979681465 0.190860576173353 0.189686002077722 0.192448865718045 0.195532648569739 0.194944412494177 0.191118002433849 0.195044348867500 0.188624475632507 0.194920343522019 3 3|0 +|/ 21811578 21812489 21812153.222 21810253 21812720 + gene protein_coding_gene FALSE TRUE AT3G59000.1|AT3G59000.2 F-box family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52650.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85825.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101)|similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G58930.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE93480.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.104930781733468 -1.15492070621130 0.272855758169983 1 0.0242813104520719 10.2042850760643 -0.104930781733468 0.0677752975846329
AT3G21380_at 1.22892645431354 0.885378284185159 1.10242992747215 0.919412150758441 0.991921557413936 0.937239735058388 1.07709111999467 1.21943884849471 1.41575805594970 1.49839142239849 1.22793188356905 1.32837204675420 1.77949878797131 1.72323668329039 0.904284701700342 1.27452635915749 1.90889735501946 1.33329606927787 1.68447116640407 0.197720501602948 0.201861487833737 0.197720501602948 0.199165736949632 0.197720501602948 0.201271093412621 0.197720501602948 0.199794232018203 0.200921472882441 0.201102800360915 0.213054758195051 0.202991681739117 0.20357014362808 0.20340873422797 0.201451415280929 0.199719782316122 0.207265919850312 0.206512802764352 0.206393857510281 3 3|0 +|/ 7529778 7530438 7529991.444 7528190 7530683 + gene protein_coding_gene FALSE TRUE AT3G21380.1 similar to MBP1 (MYROSINASE-BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52040.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72270.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.106412948239767 -1.15487631286563 0.272873175373275 1 0.0242354608296644 2.52916927675801 -0.106412948239767 0.0723471635608606
AT4G22410_at 0.991396733035297 0.748209795768993 0.767638655111093 0.592054537817438 1.25993017488036 1.32825785804361 0.83867649765268 1.12356130435132 1.13061663721497 0.779817248608274 0.799361596668049 0.865265186157182 0.99532073782508 1.03569556412854 1.09069650611573 1.36156665976885 1.37816553219936 0.858391496194036 0.779546423516194 0.260563995566390 0.259353926915106 0.268761262944753 0.261261571840984 0.254727292932432 0.254727292932432 0.254727292932432 0.257394534910661 0.261569605135479 0.254727292932432 0.254727292932432 0.257135245830070 0.254727292932432 0.267967683964853 0.254727292932432 0.258727453736571 0.254727292932432 0.254727292932432 0.260935078360676 4 4|0 -|/ 11819313 11819364 11819340.5 11818225 11820147 - gene protein_coding_gene FALSE TRUE AT4G22410.1 ubiquitin carboxyl-terminal hydrolase family protein similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G22350.1); similar to ubiquitin thiolesterase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G22285.1); similar to SAP DNA-binding domain-containing protein [Dictyostelium discoideum AX4] (GB:XP_647829.1); similar to Os09g0407900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063139.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.106453515265006 1.15455042371464 0.273001060714214 1 0.0238989224567876 1.92857470108022 0.106453515265006 0.0725587671643355
AT2G03390_at 8.88563602135211 8.97718341831614 8.8372126615675 8.97030810540754 9.3898759224779 8.69322835001915 9.57743203804285 9.25186179325167 9.02917167822753 8.84709796857403 8.7944247347145 8.76983013184934 8.63750899419243 8.85581711360866 8.69765958027 9.0131823943594 8.64249165423214 8.67747326876168 8.60640165723491 0.110917495187282 0.111217763865368 0.114208406177772 0.111304642059024 0.117487040793452 0.114808546585961 0.118395089389325 0.114180626991768 0.117447754281254 0.111558396726459 0.113428897498256 0.110728665790454 0.111553763955313 0.117349152430438 0.112029360448882 0.110153080668981 0.121495151708669 0.115822090289635 0.117262985177930 2 2|0 -|/ 1030653 1032325 1031576.722 1030399 1032622 - gene protein_coding_gene FALSE TRUE AT2G03390.1 uvrB/uvrC motif-containing protein similar to PREDICTED: similar to F-box only protein 21 isoform 2 [Canis familiaris] (GB:XP_543416.2); similar to PREDICTED: similar to F-box only protein 21 [Rattus norve (GB:XP_341092.3); similar to Os08g0172200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061100.1); contains InterPro domain Hemimethylated DNA-binding region; (InterPro:IPR011722); contains InterPro domain UvrB/UvrC protein; (InterPro:IPR001943) -0.133440337609823 -1.15433386928242 0.273086066841036 1 0.0236753317192346 17.8671450814764 -0.133440337609823 0.135978372179555
AT2G24260_at 1.77116108220280 2.47446405395073 2.05201925639140 2.26041166317572 2.08065930755366 2.05864024786105 2.27996446598373 2.46429782776872 2.08169710819871 2.38169849265048 2.01308729332398 1.89476956553618 2.07134018634595 1.92189333748974 2.01390308367524 1.77028194885274 2.14932133721557 2.57092050975223 2.07074831056117 0.195775864585464 0.195168083063534 0.191073818754719 0.194755086827659 0.185273615331464 0.185892452267986 0.197032254388981 0.201278821220355 0.19509634103528 0.195790505987093 0.200997772019052 0.185273615331464 0.185273615331464 0.189317987627147 0.19119026687314 0.185273615331464 0.200559981593239 0.18639428693287 0.196756510618089 2 2|0 -|/ 10326750 10328529 10327129.8 10326417 10329302 - gene protein_coding_gene FALSE TRUE AT2G24260.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G30980.1); similar to bHLH transcription factor PTF1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD29274.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.130948775713601 -1.15432278130975 0.273090419862494 1 0.0236638843377663 4.29457105223301 -0.130948775713601 0.130942596998178
AT2G28680_at 1.48933117301892 1.28446127096878 1.83333503205129 1.31976697376904 1.49793510664089 1.36495385192941 1.66133820897530 1.68532077603555 1.97917024054472 2.00173969859359 1.36896918283995 1.7724934603283 1.72554188953929 1.56126954008378 1.39660198818151 1.66894325608010 2.04767657026361 2.22190793524806 1.79896985911052 0.192193542335219 0.194191938475874 0.200509889586896 0.206493437761688 0.197344798871108 0.191262348681004 0.200381764781566 0.195181302452763 0.191262348681004 0.191891939088282 0.196795722860551 0.197979377096711 0.195632191343241 0.197463280943135 0.199785508320789 0.195308636313933 0.200993220627488 0.206445809961545 0.191262348681004 2 2|0 -|/ 12310213 12310633 12310411.5 12310040 12311876 - gene protein_coding_gene FALSE TRUE AT2G28680.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT1G07750.1); similar to legumin-like protein [Zea mays] (GB:AAO63625.1); similar to Os05g0116000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054469.1); similar to Os01g0976200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045565.1); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) -0.116158118873841 -1.15394063770627 0.273240478546808 1 0.0232694051799345 3.34058133779208 -0.116158118873841 0.0985018580109055
AT3G18650_at 1.05850988160131 0.97958428859633 1.18169182583257 1.07615522320713 1.02920271674798 1.00799799966655 1.35407371248906 1.22001243692739 1.65919838782050 1.80916298416415 1.40158865625507 1.54243016155963 1.49821285426638 1.50359920663876 1.41162735584431 1.63432172067563 1.32817013958628 1.45608748287713 1.28728175768596 0.183593963082409 0.186522114794151 0.183593963082409 0.183593963082409 0.187322005989694 0.187535318523711 0.187879869933640 0.191368315295295 0.192068309314588 0.187185470773792 0.183593963082409 0.184641934880093 0.185077259500598 0.187437537938961 0.184646013366697 0.183593963082409 0.192701024079995 0.183845356993158 0.187063054144642 3 3 - 6417388 6417858 6417653.636 6417350 6418510 - gene protein_coding_gene FALSE TRUE AT3G18650.1 AGL103 (AGAMOUS-LIKE 103); transcription factor similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT4G11250.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE87908.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0962464089419685 -1.15365692768231 0.273351926356779 1 0.0229766016031882 2.64201304751842 -0.0962464089419685 0.0327385805314104
AT4G14690_at 2.80459591593959 2.39934113992263 2.79674911783538 2.91928988967584 2.4734698283216 3.03242075452316 3.49707197935446 2.90097291176532 3.45800610205954 3.74059514574521 3.24285403637841 3.12176247209965 3.65969337768071 2.92868093265991 3.41021802158733 3.40729025277053 3.39322575031974 2.79960795648412 3.12513253295851 0.200409966719461 0.20441448318037 0.211092115732686 0.20161879870219 0.198451716682625 0.204556268639732 0.194550972197138 0.195415675485642 0.194335381504232 0.200358954038142 0.199926793971339 0.202660191924459 0.194855630061386 0.198220036293731 0.193099922449783 0.192998920151272 0.196428020567481 0.209819539365046 0.206431364306960 4 4|0 +|/ 8418387 8419097 8418849.1 8418278 8419258 + gene protein_coding_gene FALSE TRUE AT4G14690.1 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2); chlorophyll binding Encodes an early light-induced protein. similar to ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G22840.1); similar to ELIP [Brassica rapa subsp. pekinensis] (GB:AAR11456.1); contains domain EARLY LIGHT-INDUCED PROTEIN (PTHR14154:SF1); contains domain UPF0041 BRAIN PROTEIN 44-RELATED (PTHR14154) -0.145420541373353 -1.15358973474090 0.273378326485081 1 0.022907263036145 6.1963195389599 -0.145420541373353 0.159267455308863
AT4G36740_at 0.94488074276439 0.720419073905542 0.906609483906527 0.73161501508375 0.576117718635479 0.881455572175137 0.705101670276963 0.75823761216942 1.50050995158366 1.00078129296151 1.10257052910039 0.7401851670733 1.22205032184595 0.902251556786624 0.949783104668578 0.706212216546398 0.936582146580171 1.04449224112343 0.964296419025593 0.193938301576281 0.192438013497994 0.194720946617358 0.190189113305584 0.194506377119447 0.191766354343699 0.192762226775782 0.192687474463148 0.192229033696558 0.199054814221298 0.194174355913926 0.190189113305584 0.193673517171952 0.194859249510573 0.193762576097821 0.190189113305584 0.199904322308693 0.193491521315802 0.196871521459452 4 4|0 -|/ 17314706 17315832 17315410.8 17314563 17316378 - gene protein_coding_gene FALSE TRUE AT4G36740.1 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40); DNA binding / transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-40 (Homeodomain transcription factor ATHB-40) (HD-ZIP protein ATHB-40) (ATHB-40) [Arabidopsis Thaliana] (GB:O23208); similar to ATHB21/HB-2 (homeobox-2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G18550.1); similar to homeodomain leucine zipper protein 14 [Oryza sativa (japonica cultivar-group)] (GB:AAS68139.1); similar to Os07g0581700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060106.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.106445152360086 -1.15351676280500 0.273406999437406 1 0.0228319644352482 1.83091051027591 -0.106445152360086 0.0728189551385832
AT2G38250_at 2.22888662678913 2.29420810416998 3.07051828702415 2.60297527213715 2.16503425994975 2.45293202651748 2.16787738824461 2.04128313211099 3.05030000816014 2.90275645707345 3.01913737740847 2.56496233741328 2.40369309791168 2.64832015794751 3.27796365876408 2.83634082076839 2.93280564732052 2.92025617315783 2.99681883951355 0.210846722482532 0.209804331870817 0.218312949357485 0.216965454329573 0.227307331469213 0.213417677933908 0.225990338262937 0.217747492437948 0.222149377843807 0.213346246092825 0.216474345062186 0.213786937216488 0.220713709138881 0.209804331870817 0.213137401722475 0.21255864735058 0.224413035767729 0.223748252891725 0.214394050644766 2 0|2 /|+ 16026038 16026552 16026277.2 16025462 16026578 + gene protein_coding_gene FALSE TRUE AT2G38250.1 DNA-binding protein-related similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G01380.1); similar to OSJNBa0041A02.12 [Oryza sativa (japonica cultivar-group)] (GB:CAD41865.2); similar to B0403H10-OSIGBa0105A11.17 [Oryza sativa (indica cultivar-group)] (GB:CAH67865.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.11597214458294 1.15347777766534 0.273422318878579 1 0.0227917377710046 5.28232772566066 0.11597214458294 0.0981655682110193
AT1G53930_at 1.10963181560032 1.2621494396773 1.25271579472280 1.47691750083146 0.896456759498849 1.13536500658059 1.06027193065627 0.947438593086054 1.25550744641406 2.26361833228199 1.46036093434472 1.78096950381469 1.15011845761304 1.00610507417426 1.40407341912294 1.64800156871927 1.32835372572131 1.73811394390913 1.71037162690875 0.213331051436013 0.213331051436013 0.218771690570248 0.213331051436013 0.216008904001881 0.213331051436013 0.218978351880352 0.217991236202987 0.213366701745792 0.21460214617974 0.213331051436013 0.215327588802641 0.213670044479273 0.215760527732851 0.219237130868463 0.216382486524765 0.213331051436013 0.224684660514363 0.214257536914615 1 1 - 20144082 20144500 20144280 20144079 20144555 - gene protein_coding_gene FALSE TRUE AT1G53930.1 ubiquitin family protein similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ14 (ubiquitin 14), protein binding [Arabidopsis thaliana] (TAIR:AT4G02890.3); similar to polyubiquitin [Volvox carteri f. nagariensis] (GB:CAA52290.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.104081451393705 -1.15332489418994 0.273482401812601 1 0.0226339955844055 2.73395729522955 -0.104081451393705 0.0655181719300006
AT3G43150_at 1.97461765385911 1.17706025110112 1.79428179026047 1.20613138166134 0.93004729524772 1.46087081075141 1.33096892233503 1.31299889938163 2.23094917754284 1.94460599898325 1.80862570409000 1.65884696288414 1.78134193127810 1.61052934964519 1.70613816926882 1.4546216362111 1.86249918181054 1.82551603368549 1.65184216683734 0.207737223089101 0.200883612135925 0.206683330731706 0.200147218725049 0.197105493493022 0.196995975780353 0.196995975780353 0.19844191631936 0.224575114436944 0.202853802225687 0.197044913806273 0.201072814707436 0.206901332464284 0.202362805550815 0.208693541178081 0.197440837430480 0.199341566717973 0.202659093407750 0.207406984451058 3 3 + 15154685 15155291 15155000.778 15154683 15155333 + gene protein_coding_gene FALSE TRUE AT3G43150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11010.1) -0.165014761100478 -1.15299420300931 0.273612398123614 1 0.0222928495682038 3.22636245168989 -0.165014761100478 0.194570341700774
AT3G18165_at 7.6052165784246 7.7568284612452 7.31414563108493 7.33041830800195 7.52701254036725 7.15728546486533 7.45857493051948 7.77588415859209 6.52451671081714 7.00036282857287 7.06414088994865 7.32283100843063 7.17274147070907 7.0587139084759 7.31166440378405 6.7683509442162 6.85392530127407 6.43573295875553 7.19179391937653 0.202604191344755 0.204746327659257 0.208543221630835 0.207470779436736 0.199938747041215 0.205851355936734 0.207902909758419 0.204439693928421 0.211882168949431 0.200784953655996 0.211412798829332 0.201846304207562 0.202562415192165 0.203178602930701 0.203529768969916 0.20766126025672 0.210165043174845 0.206387541783597 0.204993364650185 3 3 + 6223419 6225053 6224263.636 6223194 6225378 + gene protein_coding_gene FALSE TRUE AT3G18165.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81183.1); contains InterPro domain Breast carcinoma amplified sequence 2; (InterPro:IPR008409) -0.111977877502531 -1.15279196440384 0.273691922873095 1 0.0220842540349566 14.4427059742817 -0.111977877502531 0.088348468516624
AT3G05440_at 0.609017542522262 0.968022142466738 1.08750927155089 1.26022923990362 1.01879977847785 0.594817355187121 0.761444912349741 0.95253586501249 0.7448536498862 0.946156328514765 1.17419557673934 0.66923755186912 1.17991893358110 1.32037984615832 1.20610439156251 0.970863729273131 1.20376570452362 1.01722313419742 1.37479594191592 0.165271446619002 0.159663654387342 0.166716148956383 0.166937389922337 0.165557563737063 0.170083088654631 0.161075085602590 0.158973646734387 0.166220799829925 0.169538914720033 0.164892858657317 0.176625425390553 0.159388003474651 0.166908396294354 0.178567805998967 0.170563074496667 0.164304457576399 0.172066299853951 0.167762435764730 3 3 + 1572724 1573229 1572839.636 1572724 1573272 + gene protein_coding_gene FALSE TRUE AT3G05440.1 C2 domain-containing protein similar to (AT)SRC2/SRC2 (SOYBEAN GENE REGULATED BY COLD-2), protein binding [Arabidopsis thaliana] (TAIR:AT1G09070.1); similar to C2 domain-containing protein / XYPPX domain-containing protein [Musa acuminata] (GB:ABF69997.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.119179798703920 1.15245391162599 0.273824893084614 1 0.0217356377961005 1.96387022106402 0.119179798703920 0.10597296460861
AT3G52230_at 10.2474905372428 10.4229478880106 10.3727571983329 10.5984194903935 10.5055648854738 10.5972875530651 10.9572609010359 11.1379548993200 10.7152729175035 10.7314542718790 10.5528069445615 10.4112960984002 10.5782022173028 10.7309279354808 10.5338720613769 10.6854145251218 10.7457969278767 10.5564018496645 10.4475587910996 0.0751437465252536 0.0765464805525126 0.0785334531489896 0.0787605570127706 0.0747891624847575 0.0767158818430003 0.0767161437949014 0.0775365338432277 0.0795629930031676 0.0792477765156832 0.0751976302863736 0.0747891624847575 0.0806244508110088 0.0760466351074306 0.0778757803194141 0.0747891624847575 0.075758086550143 0.0795574513403009 0.0794657931040392 3 3|0 +|/ 19382331 19383246 19382597 19382191 19383656 + gene protein_coding_gene FALSE TRUE AT3G52230.1 similar to E24 ASN [Spinacia oleracea] (GB:CAA56654.1); similar to chloroplast outer envelope 24 kD protein (omp24) [Spinacia oleracea] (GB:CAA53243.1) -0.102497557386771 -1.15189730917181 0.274043937826803 1 0.0211618130576949 21.2203446591763 -0.102497557386771 0.0606363689676782
AT1G14410_at 5.88821442673096 5.88198015875147 5.55186701783651 5.35865579634613 5.29157039750849 5.14932258305328 5.32353788339669 5.43087606876002 3.4181129652931 4.21365607096287 4.38970974202492 4.72647583099508 3.96331876573549 4.07070509128857 5.06523426908085 4.29092999281887 4.17649860911751 4.14493498945003 3.95726821350631 0.266548558766091 0.268402341262535 0.266548558766091 0.268815703871455 0.267742721200882 0.266548558766091 0.269653500114737 0.266548558766091 0.268730520172569 0.267624347082071 0.268076100804612 0.266548558766091 0.266548558766091 0.268018004904065 0.266548558766091 0.266548558766091 0.275608122734071 0.270485483879231 0.266548558766091 1 0|1 /|- 4929370 4930145 4929852.714 4929118 4930899 - gene protein_coding_gene FALSE TRUE AT1G14410.1 ATWHY1/PTAC1 (A. THALIANA WHIRLY 1, PLASTID TRANSCRIPTIONALLY ACTIVE1); DNA binding Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. similar to ATWHY3/PTAC11 (A. THALIANA WHIRLY 3) [Arabidopsis thaliana] (TAIR:AT2G02740.2); similar to DNA-binding protein p24 [Solanum tuberosum] (GB:AAF91282.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Plant transcription factor; (InterPro:IPR013742) 0.0985826545013995 1.15168658579179 0.274126901360505 1 0.0209446248630676 9.59274720549861 0.0985826545013995 0.0454990196510779
AT1G18900_at 3.97952002950895 4.29267344356022 4.4223682085489 4.96676893098013 3.62354182093057 4.37831956150684 4.02465085701438 4.76914840158879 3.55152267481876 3.52387336376999 3.58324332842342 4.45217765588659 3.64250123014102 3.78081211326588 3.15286862152595 3.98043251151776 4.16450419490358 3.78223845485137 3.56618619336396 0.232743953418774 0.231339407600331 0.231004229102687 0.237710798048287 0.227433534548409 0.238066044978207 0.227901456534382 0.232176715198637 0.257757588004808 0.236852467398296 0.235147060372275 0.227433534548409 0.227586986576473 0.227608012936993 0.232890309680425 0.228653291820161 0.227433534548409 0.236976688286924 0.231077433272808 1 1 + 6531780 6532308 6532055 6528975 6532605 + gene protein_coding_gene FALSE TRUE AT1G18900.1|AT1G18900.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G74750.1); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os12g0638900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067384.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE93331.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.175702317035204 1.15149955342942 0.274200553961994 1 0.0207518799764324 7.98939457727085 0.175702317035204 0.213244023747084
AT3G30810_at 2.37815642601305 2.31979345432763 2.69590478572600 2.29805455708363 2.07098483385908 2.41853922389982 2.17435359670113 2.52569336477965 2.04868395563561 2.19651997302535 2.22618950719426 2.61929387750211 2.67861606379525 2.22292558453749 2.26765544819109 2.4136706135323 2.52362208886329 2.37976491224314 2.34255507126010 0.205308991445108 0.199571308915957 0.203915016787010 0.201127328881306 0.209781289337999 0.201165428111481 0.201388868302345 0.208676649502737 0.204559612799709 0.213960144574128 0.215555482551713 0.199934239004422 0.205735369148527 0.205381926923515 0.205535164105395 0.202167241845634 0.204599751062312 0.206979436031868 0.215815070212607 3 0|3 /|+ 12498570 12498807 12498692 12495302 12498859 + gene protein_coding_gene FALSE TRUE AT3G30810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07530.1); similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436) 0.120959617514391 1.15147581529004 0.274209903051193 1 0.0207274185168569 4.66637849461011 0.120959617514391 0.110256972178861
AT4G38230_at 2.18166596423295 2.3166036699185 2.56264006131319 2.24916184371417 2.4466402611605 2.27258156232262 2.48382396303180 1.86015968315476 2.6510007476003 2.33741312741930 2.70604405549090 2.54824263828483 2.05814685750313 2.54084254553039 2.24785809627380 2.46276403441110 2.79955289975304 2.47826124923677 2.19756255985101 0.180280177515806 0.180181307807148 0.186633752628914 0.18504158747116 0.179741600269239 0.180675498943052 0.179489095800893 0.184269387727392 0.186284392981806 0.181592083447554 0.182280531582542 0.185333931298746 0.194662700040871 0.18183263958395 0.184859246087627 0.183085027036163 0.194440224644479 0.199060266984593 0.179765972027638 4 4|0 -|/ 17928989 17929805 17929486.5 17928671 17931176 - gene protein_coding_gene FALSE TRUE AT4G38230.1 CPK26 (calcium-dependent protein kinase 26); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6), anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G17290.1); similar to calcium dependent protein kinase (GB:AAC49405.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.128540590406706 1.15136039659784 0.274255363387292 1 0.0206084884241630 4.73442938878141 0.128540590406706 0.126664942414368
AT2G11360_at 0.222512186637287 0.44921092443761 -0.0933108041180377 -0.0607853859022291 0.0714352271252662 0.392513230888137 0.169011434769759 0.242498455853719 0.424125809974862 0.320761382473422 0.360789152672397 0.101054254392634 0.570536841673789 0.835991041077738 0.330022050289447 0.523107275588967 0.562434254241276 0.384619103411281 0.681413488408613 0.226939635750054 0.220806701142314 0.229239348725197 0.229703588838805 0.220806701142314 0.220806701142314 0.232637326081563 0.223881219042054 0.230137958707632 0.229814222135503 0.224102073365075 0.220806701142314 0.229953716938526 0.220806701142314 0.234304015789421 0.233575007111804 0.225397900506658 0.247286620915897 0.222125474343492 2 2 - 4538095 4538551 4538273.444 4537975 4538585 - gene protein_coding_gene FALSE TRUE AT2G11360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24900.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.105104748521750 -1.15104800969398 0.274378433731051 1 0.0202866434929635 0.641137062188476 -0.105104748521750 0.0694252622759975
AT1G66390_at 1.61237389922045 1.87768258919802 2.23641994479883 1.61380192967653 1.58486216549244 1.86646293589324 1.61081314908386 1.52241275711762 1.91979880505583 1.14327942917711 1.21890851972787 1.71519922649853 1.48279757403400 1.41575007149707 1.60135073912228 1.56355084821115 1.48758469762077 1.65669384840686 1.22490351171793 0.205572620278955 0.210744746498822 0.208898095092546 0.21100325782786 0.208484221752534 0.209253753407342 0.207478823573962 0.206288569505302 0.210238420648369 0.209146824474501 0.206432845209990 0.205421101174573 0.214400266827347 0.208070575500604 0.211851776120170 0.208310303016042 0.210619200478086 0.207770466880472 0.208083002887017 1 1 + 24768646 24769016 24768860.2 24767620 24769204 + gene protein_coding_gene FALSE TRUE AT1G66390.1 PAP2 (PRODUCTION OF ANTHOCYANIN PIGMENT 2); DNA binding / transcription factor production of anthocyanin pigment 2 protein (PAP2) similar to PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G56650.1); similar to An2 protein [Petunia x hybrida] (GB:AAF66727.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.128984168649899 1.15055434886445 0.274573007981038 1 0.0197781725695015 3.21413201595518 0.128984168649899 0.127774300980950
AT2G34600_at 0.812708142899962 0.645765509950827 1.66079878382101 1.48898837333562 0.632587376203481 0.606956570364342 0.548835089179158 0.607408515379066 0.959413811794397 0.640843814916579 0.75233201353537 0.279522734728614 0.582882937165627 0.750036510908373 0.97956705703762 0.850891200442768 0.888075046244435 0.439495730063621 1.21468461574895 0.205864662138575 0.206777629274214 0.218403872558533 0.207748004338491 0.203035908901382 0.203256595848446 0.204336571676924 0.210785956203938 0.206216739895857 0.204554973610181 0.208754407145820 0.206991766941564 0.203001489105461 0.205853759274893 0.205488485958483 0.206574700252901 0.203455706220336 0.205787194229185 0.201994145980396 2 2|0 +|/ 14580273 14580754 14580562 14580159 14580935 + gene protein_coding_gene FALSE TRUE AT2G34600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30135.1); similar to ZIM [Medicago truncatula] (GB:ABE81432.1); contains InterPro domain ZIM; (InterPro:IPR010399) 0.0978448922623443 1.1496933289174 0.274912632758985 1 0.0188917212419357 1.68983828743457 0.0978448922623443 0.0429079413537402
AT3G43630_at 2.84882176714221 2.96836155591516 3.32730700171071 2.89233104716257 2.76799327086171 3.09761899380446 3.19432808576391 2.94816532568504 3.23056828938692 3.18111722515581 2.97400145625468 3.19487687193651 3.48322719114872 3.48929441013348 3.17080435446116 3.1546981097032 3.63295356261608 3.58048446860387 2.97528165977033 0.20795616424307 0.225445347002094 0.211391055929592 0.21642472313542 0.211852965702446 0.214941599438986 0.213454512852699 0.217245160512991 0.221203078035747 0.209673289402610 0.207848321632816 0.206573933815409 0.210199427164800 0.207305405183789 0.208942425256990 0.208908829016712 0.211212486915708 0.220204518254592 0.209408280929469 3 3 + 15549940 15550371 15550159.818 15549804 15550406 + gene protein_coding_gene FALSE TRUE AT3G43630.1 nodulin, putative similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT1G21140.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) 0.118723444880571 1.14937305254842 0.275039047642426 1 0.0185621147740219 6.2376316866115 0.118723444880571 0.105654522918158
AT3G15000_at 8.14583950810338 8.12632886056151 8.08132848151716 8.18065782628656 7.67293050347617 8.11914897941935 7.67249504804372 8.37793718487646 7.84778317429589 7.94800135356005 7.39072433398855 7.44029014376999 7.72114077409305 7.39513526835073 7.65201061467235 7.7042656177761 7.95845129791464 7.58512672500779 7.64628657396878 0.153196217462473 0.152271057349553 0.158282285053997 0.152390703397742 0.159477404914274 0.155741346776155 0.158806566577135 0.156255472990700 0.161048960039814 0.15117609725648 0.171805020217007 0.15569695101921 0.156049877736865 0.156638203115571 0.155818271971918 0.156172336344841 0.162006385693567 0.162599539550987 0.152692584492625 3 3 + 5051582 5052084 5051789.636 5050264 5052439 + gene protein_coding_gene FALSE TRUE AT3G15000.1 Identical to Unknown mitochondrial protein At3g15000 [Arabidopsis Thaliana] (GB:Q9LKA5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53260.1); similar to Os09g0509000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063625.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1); similar to Os09g0132600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062627.1) -0.137632153191525 -1.14894635808763 0.275207536754211 1 0.0181230994049484 15.7570416978130 -0.137632153191525 0.145510729389517
AT1G28170_at 0.456629038414948 0.803684519334249 0.582071197308233 0.127479556563745 0.747582442119372 0.623775411695571 0.780646142242708 1.02960486976132 0.711680408216833 1.00071164813144 0.937282623791424 1.21218478308752 0.528861781124768 0.403423346424296 1.17105616998101 0.856359530103631 1.56217176619694 0.652655773589556 1.01528262465890 0.201943218564970 0.204451955325164 0.208118653666332 0.205312715389401 0.200176499999043 0.205954045357164 0.202978421499826 0.200176499999043 0.20725906953628 0.206986234148045 0.200176499999043 0.201666548439759 0.205059597935588 0.205554937151615 0.202650814063042 0.202244598934682 0.2013558644518 0.210645866949650 0.207031745975973 1 1 + 9841700 9842210 9841885.727 9841319 9842299 + gene protein_coding_gene FALSE TRUE AT1G28170.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G13420.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) -0.12056970619912 -1.14863244987452 0.275331541253609 1 0.017800206756296 1.55629632990824 -0.12056970619912 0.110051023888268
AT2G22060_at 2.90240236184173 2.69538272069753 2.86371298878004 2.80482101487677 2.17113239715439 2.62321248084534 2.18470526418483 2.36836344787952 3.11322950968432 3.16768559336562 2.77927012640391 2.5375029092389 2.58210968455396 2.42215858837719 2.71326947660720 2.53409244496306 2.93728333824431 2.89645907490579 2.65709083161827 0.176418126925875 0.175669074311537 0.177035820113894 0.169172992149791 0.172642859662730 0.170986216648191 0.178691806734560 0.169172992149791 0.176863457372749 0.172197565042987 0.184219150280466 0.17346952616706 0.176070636238662 0.171855915657437 0.175749399448316 0.174649907847552 0.174591426343381 0.172607266456048 0.173590877658301 2 2 + 9388780 9389109 9388950.818 9388072 9389225 + gene protein_coding_gene FALSE TRUE AT2G22060.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G41360.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.113030417190524 -1.14780128313318 0.275660090922270 1 0.016945577579643 5.40401834301645 -0.113030417190524 0.0922938222973536
AT3G02090_at 11.0431472883365 11.0777932816077 11.1404510311504 11.1668321992861 10.8861981667304 10.7908449717742 11.0661704205569 11.1440205714296 10.6797208623205 10.6375067448677 10.8369351150116 10.9567236945635 10.7990092530702 10.7780297992810 11.0773787547635 10.8058086691478 10.8271477886255 10.7556609212537 10.4204651833026 0.0621767270634875 0.0607431397044147 0.0635740868140806 0.0611013077841084 0.0621678035109744 0.0643866774836277 0.0619324951462599 0.0647314003650855 0.0670669430380998 0.0602223910778796 0.0611314295746762 0.0604576450487328 0.0602223910778796 0.0620123874171202 0.065842159326551 0.0610649086969381 0.0614918846711679 0.0631198283037056 0.0632528265179287 3 3|0 +|/ 367290 368505 367848 365556 368918 + gene protein_coding_gene FALSE TRUE AT3G02090.1|AT3G02090.2 MPPBETA; metalloendopeptidase Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G51980.1); similar to mitochondrial processing peptidase beta subunit [Cucumis melo] (GB:AAK07827.1); similar to mitochondrial processing peptidase-like [Solanum tuberosum] (GB:ABB86276.1); similar to mitochondrial processing peptidase [Avicennia marina] (GB:AAK51086.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.094327260526798 1.14779252497091 0.275663554538639 1 0.0169365747139846 21.7563410811730 0.094327260526798 0.0225961873169119
AT1G41860_at 1.23356956802331 1.3825882132467 1.44030489330286 1.42246413062068 0.716612594252123 1.64518946994909 1.12611250432630 1.40846607325173 1.84894885791017 1.64250417110445 1.60913585896905 1.33835596679991 1.23008206366092 1.05978811987867 1.63446439630704 1.23793403333107 1.59420574249280 1.64051759784717 1.72070833766776 0.186419963792781 0.179908100212610 0.187040078707202 0.186690670155144 0.184028425014923 0.179908100212610 0.189505325118810 0.184423397022573 0.185137802826157 0.185034928788151 0.181875394651955 0.179908100212610 0.181819824779008 0.181474878477572 0.183059920531050 0.180931819571533 0.184499447641048 0.194701777529454 0.184166755502217 1 1|0 +|/ 15642599 15643194 15642800.6 15642597 15643235 + gene protein_coding_gene FALSE TRUE AT1G41860.1 contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) -0.150433983748726 -1.14756784469284 0.275752421108057 1 0.0167056348660999 2.87463722819074 -0.150433983748726 0.169955486789584
AFFX-r2-Ec-bioB-5_at 6.92919109415609 7.37625041108309 7.48392080338605 7.53970586939108 6.38819224415252 6.79317578133772 6.91267389825625 6.93744931561706 2.00588164959102 1.74572803835279 2.30742022704690 1.92012825077607 1.92268380944194 1.95558726289516 2.32375006294720 1.71510445018320 2.33722951718336 2.12343119379919 1.80313259636985 0.421469484971721 0.423267623199546 0.42364833051015 0.425980559341981 0.419457146946872 0.434020064315818 0.422749381627058 0.421989438749678 0.410098288141263 0.410938842324309 0.417124252190892 0.410098288141263 0.411800310155199 0.410098288141263 0.410098288141263 0.414666467502818 0.413593460276644 0.410098288141263 0.410098288141263 NA NA NA NA NA FALSE FALSE 0.118221790067481 1.14756572289947 0.275753260435840 1 0.0167034541250023 9.00869373128349 0.118221790067481 0.104923014573408
AT1G72140_at 0.444740922153533 0.57882229916408 0.0719565494822604 0.0946492553176488 0.764150933103118 0.346874823934553 0.680960856146404 1.05002910227770 0.899141748194505 0.63338342674687 1.07779046656711 0.281124837138340 1.02338297025146 0.843413534333676 0.580147401542427 0.296568869755821 1.23854986886960 0.870328481163133 0.383901061685763 0.226695658352133 0.226763906129078 0.235131989203643 0.232406242096407 0.225261402458250 0.232766259755974 0.225838137560156 0.228387628279920 0.224657909026735 0.230058324421457 0.226127820471961 0.230517322674136 0.232978607535464 0.227991387578700 0.224657909026735 0.228324994116817 0.224657909026735 0.225106987108922 0.225930789505635 1 1 + 27147414 27147973 27147653.364 27145476 27148152 + gene protein_coding_gene FALSE TRUE AT1G72140.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72130.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G22540.1); similar to putative oligopeptide transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD81722.1); similar to Os01g0871500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044938.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.115812923157858 -1.14749795029935 0.275780070609372 1 0.0166338002905883 1.21163411731995 -0.115812923157858 0.099234966924851
AT3G07060_at 3.06169386595407 3.50378679679137 3.29728691742933 2.90915383672002 2.75323988776743 2.68595333740663 2.84448464495523 3.04208203212055 3.02991262093117 3.04715436468850 2.94250479804482 3.63845685596372 3.10481177895661 2.79006800751911 2.99357761442590 3.03592395000095 2.53658513744931 3.0566551393928 3.07216949712456 0.171894866289974 0.165949492808988 0.162785815195385 0.164176172197118 0.170451121448715 0.166984615142945 0.173427808007258 0.163193387178641 0.168725552275483 0.160592911056415 0.169349369916709 0.170753234817033 0.164181544391298 0.168466582847424 0.163586629485569 0.165500653110505 0.169945993941744 0.165601182227715 0.167450724670258 3 3 + 2236151 2236895 2236555.273 2232612 2237095 + gene protein_coding_gene FALSE TRUE AT3G07060.1 EMB1974 (EMBRYO DEFECTIVE 1974) similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56500.1); similar to Quinoprotein amine dehydrogenase, beta chain-like [Medicago truncatula] (GB:ABE85228.1) -0.119512962076688 -1.14704551168428 0.275959102910218 1 0.0161688836873533 6.0432443671267 -0.119512962076688 0.108026267949665
AT1G56080_at 0.65758528643858 1.06041716705082 1.47438082443539 1.03306184938106 1.15304401519676 1.65529719521591 1.21803637488370 1.10216921075716 1.31626844027139 1.57548824021845 1.90360263320019 0.67134921128666 1.44726725816340 1.49546949120899 1.42794521017740 1.59770736214256 1.72641480853041 1.26368375640062 1.59425892359788 0.264369016357781 0.261347004265836 0.26686283040416 0.282230566990923 0.261347004265836 0.265411070303232 0.267981223029524 0.268027256538444 0.275212615881976 0.265752775273695 0.261347004265836 0.264643392559575 0.265740946712986 0.265338275259365 0.275722184511926 0.261347004265836 0.275230133840257 0.261756883624728 0.265642553218538 1 1|0 -|/ 20978319 20978823 20978645.222 20977826 20979956 - gene protein_coding_gene FALSE TRUE AT1G56080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16520.1); similar to putative protein [Avicennia marina] (GB:AAV33647.1); contains domain PAH2 domain (SSF47762) 0.132867696483793 1.14687426804439 0.276026888520315 1 0.0159929539289864 2.63775824096227 0.132867696483793 0.136561887974799
AT1G50990_at 0.599683568437282 0.814217847669232 0.96133533377826 0.645485037541391 0.39435153920202 0.328716101809895 0.572694915496056 1.15747560302016 0.869758000797894 0.553060468727839 -0.0744092318233499 0.665135208624933 0.955507535999616 0.596228237953712 0.730136161722905 0.875683838955626 1.14544208828691 0.938061625961006 0.906710534246403 0.230819807578092 0.227471972081607 0.225011212716071 0.227172365109915 0.223370287022381 0.227231364379325 0.223370287022381 0.225644959096496 0.250900839067749 0.225046263736855 0.237747295741758 0.225444292292338 0.231926059466858 0.226918173561187 0.225772137099774 0.228949497733965 0.223370287022381 0.232309152728392 0.230751035713949 1 1 + 18908153 18908761 18908509.091 18906598 18908872 + gene protein_coding_gene FALSE TRUE AT1G50990.1 protein kinase-related similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35230.1); similar to Os03g0132800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048870.1); similar to protein kinase-like protein [Oryza sativa] (GB:AAG13605.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.125541232643333 -1.14682888014043 0.276044857182426 1 0.0159463273527397 1.43698641893639 -0.125541232643333 0.121392984228319
AT4G26560_at 0.980560616372866 0.688160112270979 0.750748573488502 0.96807018667392 0.936137029156078 0.97925840623899 0.856341674995188 1.20898065956731 1.29336831670317 0.849356095700436 1.05938699055202 0.973135525391985 1.15266086242732 1.24043122997485 0.613252104989231 0.76988427154758 0.42177652508833 0.843308008687969 1.10281319573393 0.226719257757051 0.225323808294584 0.219746688849482 0.218617391851728 0.218617391851728 0.218729699003008 0.218617391851728 0.225600670765984 0.219464082467834 0.22944355865578 0.218617391851728 0.222846271018286 0.227645577520374 0.22680682609151 0.218954092193828 0.222395330652695 0.229273254537230 0.224457492720254 0.222588295165641 4 4|0 -|/ 13406750 13407897 13407345 13406739 13407979 - gene protein_coding_gene FALSE TRUE AT4G26560.1 CBL7 (CALCINEURIN B-LIKE 7) Encodes calcineurin B-like protein 7 (CBL7). Identical to Calcineurin B-like protein 7 (SOS3-like calcium-binding protein 3) (CBL7) [Arabidopsis Thaliana] (GB:Q9SUA6;GB:O65578); similar to ATCBL3 (CALCINEURIN B-LIKE 3) [Arabidopsis thaliana] (TAIR:AT4G26570.1); similar to Os03g0626800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050704.1); similar to calcineurin B [Pisum sativum] (GB:AAM91028.2); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.111286823229491 -1.14681144948183 0.276051758065216 1 0.0159284213736227 1.90406981195127 -0.111286823229491 0.088060927017808
AT1G03390_at 0.795571945682667 1.11493618964288 1.4637906239996 1.33992313206383 1.57011831262237 1.03485514485150 1.57744423410195 1.37884861726341 1.43651146796786 1.37803580949034 1.67801691314177 1.29013536926994 1.47172286200400 1.48276388156415 1.56483781133917 1.40151403134272 1.05343666440780 1.22032130063738 1.04176949913209 0.214774474263873 0.216383075738001 0.215592739653054 0.219312595525520 0.215659811536191 0.220503195290759 0.208791090608228 0.211376552574847 0.223758977960966 0.213297102022804 0.210506373856949 0.218020264838383 0.216086495769281 0.214853790624448 0.215764608589880 0.212278479584385 0.219311072704517 0.211089741595430 0.221115697545950 1 1 - 841042 841586 841298.727 841032 842417 - gene protein_coding_gene FALSE TRUE AT1G03390.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G41040.2); similar to Os11g0507200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067952.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD88037.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.122688117697433 1.14675524284261 0.276074011463266 1 0.0158706834447765 2.62482728990026 0.122688117697433 0.115219004184475
AT4G29830_at 5.89096684392573 5.50925643922408 4.96773860603245 5.04799537860332 5.49328115556315 5.49109263714047 5.16714939438787 5.36961537554602 4.36675116171424 4.62343933636117 5.03971172327864 5.31082770544458 4.93795535683271 5.05720090142543 5.06730532297057 4.73985259227409 4.67203858921667 4.26689907500087 4.32513669745257 0.196288184958638 0.206821280547296 0.203555076579047 0.197641373394264 0.198875584091854 0.204332899961423 0.196288184958638 0.206240639867484 0.212181972501481 0.20045686897901 0.196288184958638 0.198279193885116 0.199568507752454 0.199951149539886 0.199088524672183 0.196402260644228 0.202359947854716 0.219009631914933 0.200480077259781 4 4 + 14598564 14599107 14598877 14597667 14599306 + gene protein_coding_gene FALSE TRUE AT4G29830.1 VIP3 (VERNALIZATION INDEPENDENCE 3); nucleotide binding The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. similar to WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Arabidopsis thaliana] (TAIR:AT2G41500.1); similar to Os11g0660300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068403.1); similar to vernalization independence 3-like protein [Solanum tuberosum] (GB:ABC01893.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.106905720430018 1.14664986416564 0.276115736877537 1 0.0157624396882071 10.0295951322103 0.106905720430018 0.0760537831558958
AT1G19050_at 9.05096312224053 9.16240833962385 8.4985112416398 8.56462978045937 9.55402025026966 9.31579255673536 9.26359519371622 9.38164348712839 9.60584739061877 9.3649206131664 10.4762464169830 10.3132970772202 9.9290207930866 9.63511428339623 10.6603095379657 10.0279997407093 9.09440610439873 9.73709348817247 9.69070340392314 0.123895503392389 0.119667916058515 0.124699846577096 0.122110535510366 0.122481353905707 0.124872261137341 0.129067178280839 0.122474336914622 0.136919152389409 0.119146680574871 0.12112890784904 0.122176337371472 0.121703035104381 0.126556162332823 0.123606877676858 0.120471032019295 0.129960075152557 0.130379041342197 0.119057381146582 1 1 - 6577960 6579019 6578678.818 6577824 6579169 - gene protein_coding_gene FALSE TRUE AT1G19050.1 ARR7 (RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Identical to Two-component response regulator ARR7 (ARR7) [Arabidopsis Thaliana] (GB:Q9ZWS7); similar to ARR15 (RESPONSE REGULATOR 15), transcription regulator [Arabidopsis thaliana] (TAIR:AT1G74890.1); similar to Response regulator receiver [Medicago truncatula] (GB:ABE82371.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.099474024635448 1.14640005109011 0.276214671713276 1 0.0155058650747779 18.8679503628821 0.099474024635448 0.0511842720993479
AT1G33811_at 6.243201847499 7.0660365954405 2.73775674766528 2.82412570243915 5.95220328782487 5.92009261585108 2.65207895522302 3.41851620429882 5.42593272305695 3.54882172895760 5.16074481756334 7.79022743582313 3.81808808543497 3.90338671836555 6.61069513149194 5.23147261171073 3.06052386075078 5.03633336901519 5.78203892670915 0.243355560253251 0.236248431731986 0.246349653725239 0.236253512373715 0.236252860206063 0.241362140329748 0.234975567471214 0.244832132453704 0.241420750284495 0.242602702951713 0.237517809956957 0.234904307903695 0.24112077829435 0.234904307903695 0.245560914055354 0.236775534261616 0.236757570052992 0.236357355059326 0.234904307903695 1 1|0 +|/ 12268927 12269604 12269337.4 12267846 12269893 + gene protein_coding_gene FALSE TRUE AT1G33811.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G45670.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.164455467321012 -1.14636046837859 0.276230350404213 1 0.0154652149380506 9.59943405953556 -0.164455467321012 0.195250896045566
AT3G16990_at 6.73120790620252 7.16575392002733 7.4951968526231 7.54846761224086 6.96318720296562 6.26658195583574 6.28441779329461 6.268856334108 5.64590685288233 5.81597041497857 5.45841787335189 5.27078999486985 5.5955218774407 5.42100473209526 4.98860416446457 5.61161516515335 5.56498004861049 6.34790807345487 5.68876797355739 0.201711039446513 0.203609171452679 0.201332716153048 0.20244009782762 0.199475551430794 0.215087566360156 0.196620141736504 0.200352046329458 0.202607487721526 0.196828355159289 0.204720553382077 0.200240490811759 0.196620141736504 0.202892271875535 0.199073968007756 0.196620141736504 0.208900270508403 0.203747988842090 0.206410253230394 3 3 - 5795957 5796691 5796339.818 5795845 5796856 - gene protein_coding_gene FALSE TRUE AT3G16990.1 TENA/THI-4 family protein Identical to Seed maturation protein PM36 homolog [Arabidopsis Thaliana] (GB:Q9ASY9;GB:Q8LBN8); similar to Seed maturation protein PM36 (GB:Q9SWB6); contains InterPro domain TENA/THI-4 protein; (InterPro:IPR004305) 0.135636455774455 1.14547308601634 0.276582024054479 1 0.0145541852788746 12.465077191322 0.135636455774455 0.1424071698271
AT1G16190_at 2.90190421977530 3.62112732257992 2.59044727330544 2.59610116526319 3.31200288505913 2.92768410562846 3.5890740476158 2.97000648231197 2.61487491166094 2.94910697457948 2.65692544341610 2.87646164645425 2.80794941042566 2.52897710806923 2.66512471534744 2.66534707754786 3.0509888698691 3.33219097377705 2.58775838808303 0.232465393087534 0.230038429831206 0.244933884291258 0.233888153181738 0.231422316246665 0.243055012311045 0.232816440372363 0.245838466827219 0.23765737975942 0.236531319612392 0.236514015787554 0.231496072133291 0.227864274115035 0.233624339204706 0.233487270503915 0.227677209819289 0.236998285401008 0.232994583564032 0.229002018886593 1 1 + 5543734 5544978 5544482.818 5543146 5546097 + gene protein_coding_gene FALSE TRUE AT1G16190.1 DNA repair protein RAD23, putative Identical to Putative DNA repair protein RAD23-2 (RAD23-like protein 2) (AtRAD23- 2) (RAD23-2) [Arabidopsis Thaliana] (GB:Q84L32;GB:Q9S9L8;GB:Q9SA20); similar to RAD23, damaged DNA binding [Arabidopsis thaliana] (TAIR:AT1G79650.2); similar to RAD23 protein, isoform II [Daucus carota] (GB:CAA72742.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.154110131625587 -1.14528558628871 0.276656375637814 1 0.0143617582716671 5.83366464455298 -0.154110131625587 0.177181222305527
AT2G47150_at 1.51758956971752 1.21293279132773 1.60268302617382 1.4104752809425 1.17276327828415 0.835964601119278 1.48059242527597 1.48539782621775 1.87382612894659 1.55046703180630 1.50750085258690 1.5623518721855 1.52861727301539 1.75958684780454 1.96575944088213 1.40754578065269 1.28463449021105 2.07802098743023 1.64042335241499 0.214358630825209 0.214601131340112 0.213347412073488 0.216674136765723 0.219725519167313 0.217990699630907 0.213330592062309 0.210299511254178 0.214517067624992 0.216682827390662 0.218715767828553 0.216303032376077 0.210299511254178 0.219567477030009 0.221780194337683 0.211350333807498 0.210940786661592 0.213521930361633 0.218633041061861 2 2|0 -|/ 19359397 19360118 19359779.5 19359394 19360184 - gene protein_coding_gene FALSE TRUE AT2G47150.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta-hydroxysteroid dehydrogenase [Di (GB:AAW31719.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.110071625565689 -1.14486082198761 0.276824870227440 1 0.0139259210815036 3.00229536529168 -0.110071625565689 0.0853452565896811
AT3G27700_at 7.02776791930089 7.3940787332502 6.92539725416651 7.55996105405249 7.18891261468787 7.3187995560117 7.14675244216335 7.0950419970525 7.58709011316454 7.04355558133075 7.11995690418648 6.96722884406859 7.02091467293458 6.52359923349574 6.11592878048994 7.08858401829429 7.64823301767141 6.54962615155875 7.02793026594586 0.217458596093137 0.215725153893430 0.223685431135563 0.21410471347412 0.213143586606046 0.213143586606046 0.215785699772878 0.215640770740988 0.219580408543337 0.22154458487506 0.214859750539794 0.214911031187236 0.218529651619205 0.223805640573400 0.219713956743839 0.213143586606046 0.221338734540559 0.232450921053774 0.221132469658838 3 3 - 10258958 10259831 10259464.455 10258354 10263211 - gene protein_coding_gene FALSE TRUE AT3G27700.1|AT3G27700.2 RNA recognition motif (RRM)-containing protein similar to H0718E12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66461.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.128954510260835 -1.14466644878414 0.276902000407374 1 0.0137265222884453 14.2564810828279 -0.128954510260835 0.129085256128647
AT3G51190_at 1.37394930828933 1.04450154520228 0.93164063482703 1.29152965076542 1.16140785962559 1.33966523051250 1.45650456467557 1.58584762342007 1.59046861972404 1.69490508913238 1.28017435825045 1.5656507317984 1.61221749779807 1.49083252230223 1.63358981310998 1.14008775051104 2.06529547752162 1.89441585244519 1.59489220680574 0.209681005729853 0.211071349971164 0.208987469029945 0.206615664553078 0.206615664553078 0.213289879624278 0.212067449909207 0.208370370186477 0.211520701269474 0.214553738868889 0.209333051057955 0.206615664553078 0.213747688278218 0.206615664553078 0.215788384515919 0.206815922882522 0.210877640915780 0.212941811109614 0.214454840357451 3 3|0 -|/ 19027612 19028308 19028055.5 19027585 19028526 - gene protein_coding_gene FALSE TRUE AT3G51190.1 60S ribosomal protein L8 (RPL8B) Identical to 60S ribosomal protein L8-2 (RPL8B) [Arabidopsis Thaliana] (GB:Q4PSL7;GB:Q9SD27); similar to 60S ribosomal protein L8 (RPL8C) [Arabidopsis thaliana] (TAIR:AT4G36130.1); similar to EMB2296 (EMBRYO DEFECTIVE 2296), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G18020.1); similar to Translation protein SH3-like [Medicago truncatula] (GB:ABE82951.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein L2; (InterPro:IPR002171); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.112806110608888 -1.14414157206070 0.277110362872005 1 0.0131882045673892 2.87914995500865 -0.112806110608888 0.0926386119306245
AT4G00130_at 2.01237946628216 1.79428713279419 2.30037622855631 2.03009559408075 1.85794212761128 2.14490316718890 1.96656991215181 2.01942992429747 2.00465839596185 2.28641969852523 2.63579827981627 2.01953144273296 1.91230163613535 2.44062007643461 2.30309736803654 1.76215223505807 2.34990941025944 2.09091466178806 2.03722488219481 0.197623962192472 0.194095100756776 0.195334714732992 0.193380370759275 0.19265805100315 0.205816257326409 0.194302373239161 0.202877680483263 0.209563801295469 0.196884972389049 0.194405910721385 0.198386540719527 0.19265805100315 0.208420722362915 0.192759594282681 0.19265805100315 0.196293044953626 0.200871396037491 0.205498420948602 4 4 + 48477 49012 48812.9 48266 49068 + gene protein_coding_gene FALSE TRUE AT4G00130.1 similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G25210.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.107509491849966 1.14402256389829 0.277157622994807 1 0.0130661752220281 4.165110426292 0.107509491849966 0.0784983101564703
AT2G02640_at 1.65827563800174 1.51604476130208 1.65967342820438 1.39127102623086 1.05511713721688 1.32993817876486 1.33802685735138 1.61879033689486 1.42001634207008 1.67108817032391 0.98458141939747 1.14212368379916 1.56815605942683 1.60353473341303 1.60640403579249 1.61608864656797 1.36132751134372 1.52155937443020 1.32524064009981 0.168745721252595 0.169358895436612 0.17002940413055 0.171704487834724 0.165132294806115 0.177908759848595 0.165132294806115 0.167186184155843 0.166659485533596 0.170769949923987 0.166035200654542 0.168055809296426 0.167105920927056 0.179112399521138 0.172855673002299 0.168055301469212 0.176502733928549 0.170421695764890 0.170289532251617 2 2 + 733677 734171 733971 732387 734270 + gene protein_coding_gene FALSE TRUE AT2G02640.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02680.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G02610.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G02690.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.110213786796589 -1.14401994183761 0.277158664329377 1 0.0130634867065483 2.89468566242219 -0.110213786796589 0.0859411498003743
AT2G05850_at 0.789781934765709 0.469072731788574 0.672296991104333 0.703062934792565 0.528833271774456 0.783272497868874 0.592954895930621 0.590731079926102 1.36900257963090 0.697336753349374 0.71672622306044 0.82974652824898 0.594181979120483 0.273617768728072 0.948610658169202 0.197786536782649 0.551710295227911 0.55125159510419 0.496016186425044 0.198712301916863 0.202717578421141 0.198519073633547 0.209150575304580 0.205033700601989 0.199947490076908 0.199169239739354 0.197736838477185 0.217630519019680 0.210542856430434 0.197736838477185 0.205868525895188 0.202014021983361 0.201785246169470 0.201445896385507 0.206593272512534 0.199522946171678 0.204740395985974 0.207623011040878 2 2 - 2242790 2243269 2243021.182 2242678 2244484 - gene protein_coding_gene FALSE TRUE AT2G05850.1 SCPL38 (serine carboxypeptidase-like 38); serine carboxypeptidase similar to SCPL36 (serine carboxypeptidase-like 36), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52000.1); similar to SCPL37 (serine carboxypeptidase-like 37), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52010.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC19488.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.104966647565447 -1.14380831979827 0.27724271870284 1 0.0128465168189265 1.35978701950575 -0.104966647565447 0.0710463063294017
AT1G73430_at 4.9915922687396 5.61571621666412 5.30860656275315 5.37437977379633 5.41760722706564 5.40933768683209 5.71448411601317 5.27818835058521 5.19600258320813 5.51363064397349 5.52354567118036 5.50707319547479 4.98337143557863 5.07848678977168 5.25165688879493 5.06947543502353 4.70716630218809 5.07068458354741 5.45202594617932 0.270213255058166 0.275685541289063 0.270577753761874 0.278088724895559 0.271791203245152 0.277266081776454 0.266453079303712 0.279223817638928 0.307939413281033 0.265981911490244 0.262925649366118 0.262925649366118 0.26937325977428 0.27041069015787 0.277356672855537 0.27168617508289 0.265617275827090 0.308184539086218 0.270458227166333 1 1 + 27612940 27614455 27613723.4 27607316 27614729 + gene protein_coding_gene FALSE TRUE AT1G73430.1 sec34-like family protein similar to Subunit of cis-Gol (GB:CAL52453.1); similar to Os08g0451000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061944.1); contains InterPro domain Sec34-like protein; (InterPro:IPR007265) -0.130399806073719 -1.14374809395812 0.277266643490992 1 0.0127847746617954 10.6568151563805 -0.130399806073719 0.132279797128936
AT1G61920_at 4.22347769533371 4.3302936308893 4.64624242112607 4.35211768086467 3.99345157613856 4.27035519001434 4.04760582470345 4.37337588854245 5.13009561752087 5.11506561370654 4.80569762589347 4.7508448751983 4.74514919067459 5.03319567725329 4.70188159429654 4.69794974136666 4.82162255242662 4.69547566870392 4.98917346388653 0.191390385512987 0.183298730251846 0.185161837272659 0.185998676371716 0.186878693092316 0.187679456486001 0.195413272662951 0.188933759123305 0.183298730251846 0.188447401325416 0.185144896678315 0.191826492855031 0.198808519549693 0.186808149172996 0.188962874968635 0.186737215599682 0.188232560007988 0.183298730251846 0.192672037914669 1 1|0 +|/ 22892136 22892404 22892332.1 22892122 22892433 + gene protein_coding_gene FALSE TRUE AT1G61920.1 unknown protein -0.112390496071312 -1.14371500611219 0.277279788361692 1 0.0127508548199193 9.2094093288339 -0.112390496071312 0.0916897034091957
AT4G18490_at 1.50313604245058 1.25244544611560 2.1668104895582 1.98167610523238 1.57999609494274 1.56607108887045 1.93165054144799 1.96102771118780 2.21304044829935 2.09509239830939 2.15236299824419 1.73273688845328 2.07764795193211 2.01639013711784 1.50844867083878 2.48878091823561 2.19979664629919 2.38543628319113 1.78712427209179 0.177638187261692 0.175984542517772 0.175946001930991 0.178361463824379 0.178178359482205 0.180495996469261 0.180250959191906 0.181490731145111 0.18618580285033 0.188449869287846 0.175700699786678 0.179989524265245 0.178366352036381 0.18249725672109 0.181588403245372 0.177844794347501 0.177059933653597 0.185332696815217 0.182129231139121 4 4 + 10207037 10208157 10207563.091 10205298 10208208 + gene protein_coding_gene FALSE TRUE AT4G18490.1 Identical to Hypothetical protein At4g18490 [Arabidopsis Thaliana] (GB:P16128;GB:Q9SB82); similar to Os01g0755100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044283.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87293.1) 0.100010599119643 1.14367365048365 0.277296218471666 1 0.0127084603613207 3.79382790732032 0.100010599119643 0.0542237011748693
AT3G06540_at 6.04115476530593 6.30497237250571 5.67878530688431 6.20854948485202 6.18060062697752 5.98566876734014 6.04424701355533 5.56284722896751 6.04838345918436 5.43152221905061 5.41226588287847 5.49434386173076 5.33856954051587 5.57614668026188 5.06982640193952 5.63065381197666 5.19555724770107 5.32706494958085 5.53075830897231 0.235617315506420 0.225746357952499 0.237804526493611 0.223183659474981 0.234743880253177 0.250867552086436 0.229097143498968 0.230579488722715 0.235592449097654 0.223511041203506 0.225319077214015 0.221975584089932 0.221975584089932 0.235411734140057 0.23137595215243 0.221975584089932 0.236239804705341 0.225001606125198 0.223319483027782 3 3|0 -|/ 2035247 2036039 2035680.9 2035010 2037794 - gene protein_coding_gene FALSE TRUE AT3G06540.1 GDP dissociation inhibitor family protein / Rab GTPase activator family protein similar to ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1) [Arabidopsis thaliana] (TAIR:AT2G44100.2); similar to putative Rab escort protein (REP) [Dictyostelium discoideum AX4] (GB:XP_641266.1); similar to Os01g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042697.1); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005); contains InterPro domain Yeast Mrs6p protein; (InterPro:IPR000632) -0.132286040283041 -1.14313204965416 0.277511460101744 1 0.0121533635246384 11.5262406338697 -0.132286040283041 0.136262718837135
AT4G18400_at 5.89633686396284 6.17543286388517 5.78121474853223 5.83901385566564 6.48727108598546 6.0920506292253 4.98336401363392 5.65606219785379 5.49684578792986 5.7208554388924 6.10017671366699 5.69939341955104 5.59269230193842 5.81542920262949 5.21618892861602 5.26918447960089 4.93837933154788 5.67098208598799 5.6958268811082 0.214458291087966 0.205611434883612 0.210457729810462 0.202314115650451 0.208100835671112 0.217888466518113 0.213383241331126 0.207247143078154 0.214439632102653 0.209409950844152 0.208345357051644 0.205104212791639 0.199728523315174 0.228583296901218 0.203368243697474 0.201060635167753 0.220612004806397 0.205551803202903 0.203943323936422 4 4|0 -|/ 10170048 10171196 10170510.778 10169877 10171268 - gene protein_coding_gene FALSE TRUE AT4G18400.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25549.1) 0.136024600158539 1.14302671439689 0.277553337266156 1 0.0120454269109209 11.4516662876360 0.136024600158539 0.143745559353544
AT2G02730_at 3.45125979471625 3.5505124228995 3.63643858716537 3.82813173866213 3.62935488113554 3.5054671957228 3.50492908001277 3.49411229744353 2.90634351745416 2.97493447285036 3.10810114292491 2.88706814782788 2.99386874076783 3.19712554423117 2.75012935064320 3.20029357247227 3.67159172079768 2.68362992282306 3.16816149916168 0.174979269382618 0.183822854842121 0.177796953952048 0.173431218700884 0.168197503274155 0.170850879508408 0.17296559074802 0.170800926533789 0.175593778631625 0.174693986781480 0.175714582259233 0.170491579403244 0.178501294801356 0.179631342724212 0.174871131130876 0.174128766256243 0.175538157953385 0.168915417565116 0.173583850515852 2 0|2 /|- 765495 766704 766283.667 764546 767435 - gene protein_coding_gene FALSE TRUE AT2G02730.1|AT2G02730.2 similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G27000.1); similar to bZIP transcription factor bZIP109 [Glycine max] (GB:ABI34660.1); contains InterPro domain Protein of unknown function DUF1664; (InterPro:IPR012458) 0.097320444946189 1.14302199179730 0.277555214901549 1 0.0120405878611377 6.61400367353627 0.097320444946189 0.04311198064381
AT3G60530_at 5.26154023153563 5.52615012597145 3.67948902838486 4.02417216865797 4.6936878344842 4.89004715593764 3.9356417645358 4.71201956869417 4.83573456940227 4.74668371616112 5.69240723826579 5.9597843462861 5.6413793949747 5.6541678222336 5.6792977341388 5.70268820233818 5.69416914722398 5.83488658102394 5.14431966258358 0.219283428733654 0.214636089178105 0.213564956516569 0.226943228621958 0.210804806204345 0.224562831586517 0.218186253887040 0.211717129317333 0.223240031476034 0.208924012446759 0.210609827815512 0.208924012446759 0.210526675937598 0.219580168435315 0.214078400708838 0.208924012446759 0.227649071001684 0.216548792370539 0.208924012446759 3 3 + 22384614 22385085 22384783.909 22384190 22385362 + gene protein_coding_gene FALSE TRUE AT3G60530.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 4 (AtGATA-4) (GATA4) [Arabidopsis Thaliana] (GB:O49743); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT2G45050.1); similar to AG-motif binding protein-3 [Nicotiana tabacum] (GB:BAC98493.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.143223016555110 1.14285281953221 0.27762248179576 1 0.0118672542666256 9.9109735886217 0.143223016555110 0.157674010399794
AT3G27320_at 6.61757027901864 6.42700662771886 5.99946234134376 5.93837855450344 6.60774723362585 6.81210797565203 6.41423801072412 6.50152890787988 6.12072379095157 5.81000823754388 6.4790432140274 6.20276403581439 6.25280681978818 5.97975117026402 6.34027468914938 6.62153016547409 5.88752073065108 6.03497278678378 5.69594960703738 0.210668321830285 0.203259809111152 0.207077097580068 0.204902691194012 0.201724496992993 0.205947044472924 0.202758619329368 0.204039521361623 0.214142530192205 0.200139029820744 0.20330011967885 0.205419319045435 0.211922316804441 0.205599658174196 0.205552677549581 0.202271864998427 0.209096510983583 0.203372576075741 0.207654197866862 3 3|0 +|/ 10092334 10093541 10093273.1 10091302 10094028 + gene protein_coding_gene FALSE TRUE AT3G27320.1|AT3G27320.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14310.1); similar to CXE carboxylesterase [Actinidia deliciosa] (GB:ABB89022.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.0993052381311611 1.14282740230031 0.277632589384017 1 0.0118412135206326 12.4649517396441 0.0993052381311611 0.0517513737720453
AT4G20380_at 8.5425058453961 8.4648102011866 8.59338178411507 8.44175478893421 9.08760266706548 8.7866665854462 8.5117365756002 8.373174143649 8.65227707949568 8.11262047684255 8.2871286172623 8.28112951814923 8.24089385121964 8.400530994108 8.18869546249106 8.5168958367746 8.44190328632303 8.27670238244608 8.36881443825517 0.117063613615547 0.119576101151721 0.116646893211936 0.115537349178560 0.121181399253338 0.123018293228094 0.117464860520714 0.114931003291482 0.127264532561745 0.123818267835226 0.122450492721293 0.116948108122286 0.115941108840635 0.118057562166536 0.118969198222432 0.114931003291482 0.120001184671791 0.122791521635287 0.118912915682599 4 4|0 +|/ 11005120 11006283 11005875.556 11004528 11006799 + gene protein_coding_gene FALSE TRUE AT4G20380.1|AT4G20380.2|AT4G20380.3|AT4G20380.4|AT4G20380.5|AT4G20380.6|AT4G20380.7 LSD1 (LESION SIMULATING DISEASE) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge similar to LOL1 (LSD ONE LIKE 1) [Arabidopsis thaliana] (TAIR:AT1G32540.1); similar to zinc finger protein LSD1 [Brassica oleracea] (GB:AAL50981.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735) 0.102812880165608 1.14278549446731 0.277649255361214 1 0.0117982786118592 16.9537735698214 0.102812880165608 0.0644705694928457
AT2G24140_at 2.20162862068686 2.52545908869037 2.63602614259745 2.62552613583147 2.23489262582351 2.28294398899944 2.54900127296792 2.17642494760263 1.99768274104452 2.3951728853493 2.66512138253471 2.46314276709043 2.21518331508313 2.56517155189313 2.37729465029738 2.36916289224556 2.42778598851567 2.12180059552801 2.39378462842160 0.164400202557566 0.159722942580478 0.159782980647739 0.150873195601692 0.158851303573378 0.158226082685049 0.158959176666241 0.158169256128728 0.158052488064642 0.156111721892951 0.158102572194915 0.156296830435712 0.163910889314220 0.154170548849424 0.158688271158583 0.152649047094774 0.164158963622614 0.153941178757605 0.168501823137695 2 2 - 10269940 10270455 10270167.909 10269634 10271113 - gene protein_coding_gene FALSE TRUE AT2G24140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30830.1); similar to Protein of unknown function DUF593 [Medicago truncatula] (GB:ABE79503.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.110044107726361 1.14261500138375 0.277717065358656 1 0.0116236195633852 4.73538600848511 0.110044107726361 0.0858494996340057
AT3G14640_at 1.69024584598449 2.11318947791868 2.15484398701028 1.82375895349920 2.19187177802431 1.61260555676744 2.46105402841406 2.73725244216432 2.26335316945460 2.48297501369584 2.23407756506317 2.38057189568991 2.65810281619806 2.58670840709003 2.19975252416697 2.67373382481552 2.19414613225618 1.95404119350511 2.23908982098023 0.232740481104647 0.232740481104647 0.232740481104647 0.23831258929972 0.234115755872928 0.249272328274043 0.239699477330277 0.250044098438665 0.253414411991305 0.242084583189744 0.240737472839888 0.246426210087543 0.234626543669817 0.241642943632193 0.24887441853846 0.232740481104647 0.245862335428296 0.243307518416476 0.24796144056889 3 3 + 4921146 4921761 4921484.333 4919863 4921794 + gene protein_coding_gene FALSE TRUE AT3G14640.1 CYP72A10 (cytochrome P450, family 72, subfamily A, polypeptide 10); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.136498126495257 -1.14240762462277 0.277799562415223 1 0.0114112025871081 4.44240999016868 -0.136498126495257 0.144822409580783
AT1G22970_at 6.25908614382547 5.51074846293925 6.18349951707687 6.17674904373293 6.37525109099446 5.97347236941881 6.13835549649721 5.66862496249736 5.31542573093832 5.01929980912223 5.00433766205816 5.09256622679323 5.18986564726428 5.21820821824527 5.42028783510475 4.97987109455442 5.31004569744453 5.08828963660611 5.11112786933688 0.210587126428730 0.204450698875063 0.212532714962918 0.209558284995235 0.208520664808124 0.218231099305798 0.211130370558523 0.204144133472881 0.215549162004181 0.217117084740007 0.209497800936583 0.206045210957008 0.208706161303449 0.206944710555427 0.214795190517809 0.208911640906714 0.20753287174706 0.211451480836901 0.217233152846662 1 1 - 8130906 8131385 8131113.545 8130705 8132197 - gene protein_coding_gene FALSE TRUE AT1G22970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71150.1); similar to Os05g0554500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58733.1) 0.148677718996157 1.14238791668679 0.277807403469022 1 0.0113910171989167 11.1914992885684 0.148677718996157 0.167972509422144
AT2G43990_at 1.11813163994145 1.02353888605049 0.971799436910674 1.41953050207769 1.17087166479392 1.26614527164848 1.04574516744386 0.838715645627383 0.900460263416385 1.97016098400921 1.73194953704538 1.15513189562648 1.08888600888388 1.55112292304818 1.43514357941622 1.09207435557341 1.44658583208043 1.27721871154538 1.10694391849277 0.220229706310354 0.220229706310354 0.220229706310354 0.225736866631359 0.221279255781173 0.224708526915949 0.221700173911232 0.226901992974812 0.229110890181663 0.226698271345702 0.220229706310354 0.220229706310354 0.230398977011278 0.230549801785142 0.220229706310354 0.220229706310354 0.235678268573083 0.233442910886533 0.221312460048014 2 2 + 18220350 18220892 18220600.636 18219000 18220998 + gene protein_coding_gene FALSE TRUE AT2G43990.1 similar to hypothetical protein-signal peptide prediction [Rhodopirellula baltica SH 1] (GB:NP_870028.1) 0.110981467094098 1.14205784534536 0.277938752145719 1 0.0110529892004839 2.44336935716601 0.110981467094098 0.0884695621653434
AT1G09870_at 4.99958106179980 5.25248501114833 4.58196155668434 4.88251969591713 5.3602361091513 4.83676969335088 5.1609519455706 4.40379416207837 3.98209566717630 4.32842760157238 4.68499064484955 4.74704966640574 4.03785451945101 4.68522111571797 4.60912751731236 4.48863963605096 4.50415642126861 4.11043031631446 4.11444917408755 0.264235050986606 0.257440485161934 0.258534682925777 0.263967865143897 0.259233591537796 0.257440485161934 0.257440485161934 0.271263490162797 0.272185950954126 0.260002876808368 0.259158840946551 0.257983760837108 0.257440485161934 0.262570547564041 0.260822102341027 0.257440485161934 0.265930600391030 0.266867059375002 0.262135158832700 1 1|0 +|/ 3207610 3208413 3207994.4 3205743 3208600 + gene protein_coding_gene FALSE TRUE AT1G09870.1 histidine acid phosphatase family protein similar to alkaline phytase isoform 2 [Lilium lon (GB:ABD96176.1); contains InterPro domain Histidine acid phosphatase; (InterPro:IPR000560) 0.15147248367628 1.14199914736547 0.277962115492070 1 0.0109928841184462 9.24733300977096 0.15147248367628 0.173193104103311
AT1G33930_at 2.10313736604700 1.48696562564955 1.35177178778065 1.43447927413341 1.67148336769034 1.55228598048569 1.54105363572613 1.48154763579709 1.95178946827049 1.90005827789680 1.46054784759392 1.80478448172230 1.66085933229123 1.74670188791594 1.58008186727988 1.57323279370817 1.92703065182702 2.06902573683973 1.59858251002369 0.215105014971648 0.220992110078315 0.219901294322472 0.215841146458374 0.220919456757591 0.221889126180509 0.228271642659253 0.218688920022636 0.218499921732169 0.218697006500120 0.214863922112487 0.220398324797979 0.214863922112487 0.220803619701171 0.219370447375163 0.221255008509372 0.217265355449388 0.225646544985652 0.216205168251580 1 1 + 12326176 12326927 12326455.091 12323868 12327064 + gene protein_coding_gene FALSE TRUE AT1G33930.1 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative [Arabidopsis thaliana] (TAIR:AT1G33900.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) -0.119848986891071 -1.14185340555393 0.278020131185417 1 0.0108436588673854 3.35013716431087 -0.119848986891071 0.110030262358682
AT1G54780_at 12.8425130040063 13.1406117942654 13.0524154126270 13.0984204342338 12.9122281401627 12.8869625572814 13.2502597285008 13.6000302119296 13.8661927265095 13.7689964313798 13.9494927879807 13.8395479937079 13.8059419644933 13.9253382605622 13.7034898003530 13.8966209815090 13.1888177180787 13.8216065186008 13.6482409928725 0.0713910087263432 0.0729441252658187 0.0723633754012247 0.0767505547220017 0.0711011104124555 0.0759125178419015 0.0728009843975385 0.0724145619841253 0.0821462968031095 0.0727475047086397 0.0707893329501759 0.0722363482493947 0.0715679056658202 0.0735030601710396 0.0725413593897679 0.0707893329501759 0.0828118556587305 0.0780351738426171 0.0732597479759484 1 1|0 +|/ 20443463 20444587 20443978.375 20443101 20444826 + gene protein_coding_gene FALSE TRUE AT1G54780.1 thylakoid lumen 18.3 kDa protein similar to Os05g0401100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055486.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57312.1); contains InterPro domain Protein of unknown function DUF477; (InterPro:IPR007621) -0.107816714512952 -1.14147217311034 0.278171933564345 1 0.0104533836659008 26.8616803537499 -0.107816714512952 0.0800472931908587
AT4G19010_at 3.53046556402398 3.51269880134874 3.4263420412818 3.64294358161439 3.78820206962153 3.77070366456431 3.77080344908162 3.28656705357406 3.57740485228705 3.46783007957276 3.25429092276205 2.94761158264167 3.5638175033011 3.10039388317129 2.78580045994872 3.43786141897891 3.19873648973985 3.10527081499648 3.54665575055070 0.189698572475791 0.186592457977839 0.193695120483393 0.184214596560645 0.184268452343869 0.183437867976657 0.189233578804457 0.193793087737175 0.185934609906714 0.187048449051759 0.182525714979546 0.182525714979546 0.182525714979546 0.182525714979546 0.183612246940028 0.185458358921819 0.183050244953431 0.190679151271505 0.187442628118899 4 4|0 -|/ 10411790 10412847 10412449.5 10411501 10414260 - gene protein_coding_gene FALSE TRUE AT4G19010.1 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to putative 4-coumarate--CoA ligase 4CL2 [Oryza sativa (japonica cultivar-group)] (GB:BAD13196.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.112246610382125 -1.14140383438227 0.278199152070377 1 0.0103834345480402 6.94351733409514 -0.112246610382125 0.0919021233986203
AT3G12560_at 6.49902670870894 6.06880713230626 5.89289368473557 5.72531113503351 5.71805097145159 6.09270801769676 5.49636542102113 5.75571485537166 5.44596470797154 5.56985409264685 6.30237668712876 6.39530086352624 6.1889870624057 5.79007185210055 5.64874755921895 6.63932382896706 5.77138640200026 5.64279500983435 6.10849427382635 0.193739386418924 0.184732423437045 0.184889955458463 0.187491583852947 0.187462426005953 0.189723521986439 0.185377479380693 0.195621292780069 0.198949057916157 0.191684502036598 0.194727919237319 0.195005586778453 0.193802590283798 0.187825038263406 0.186908032218687 0.185065972719547 0.205465823448435 0.186528432880081 0.183731835620998 3 0|3 /|- 3982362 3983001 3982644.3 3981991 3985557 - gene protein_coding_gene FALSE TRUE AT3G12560.1 TRFL9 (TRF-LIKE 9); DNA binding Encodes a telomeric DNA-binding protein. similar to TBP1 (TELOMERIC DNA BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G13820.1); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.120765861438425 1.14119304418121 0.278283120353411 1 0.0101676974002116 11.7838487489387 0.120765861438425 0.112259378114463
AT1G20180_at 1.08914840600168 1.11968077889591 1.32660166307797 1.04067314121132 1.06269183651707 1.43623711467127 1.03653059550360 1.14159858637594 1.70818222084370 1.21281111658228 1.00959386532386 1.40499732756059 0.908004632801525 0.746346940783383 1.1702702038486 1.21754604810504 1.39581577036713 1.38504660062649 1.55686946306465 0.201384274753997 0.204843307261532 0.205067061498593 0.203268605681041 0.198204753911524 0.211840240345405 0.204911766931655 0.198204753911524 0.200668766881403 0.217754408967547 0.209028814314186 0.202379321971435 0.206542861614879 0.206525558752160 0.204935227309169 0.202885476886597 0.211195086573647 0.224064709775716 0.206079262316963 1 1 + 6997199 6997733 6997475.273 6996201 6997934 + gene protein_coding_gene FALSE TRUE AT1G20180.1|AT1G20180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49070.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE88938.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) -0.109053456322339 -1.14105413388543 0.278338466042564 1 0.0100255438271539 2.48030706886882 -0.109053456322339 0.0835806914864167
AT3G59910_at 5.49778248371854 5.54016300275129 4.77544146547563 5.39973600648999 5.55718782902957 5.72077012600543 6.18601672559137 6.27511785208396 5.55617781522042 5.9054191768184 5.94013911395792 5.82619793791399 5.9099518710949 5.90698072797984 6.32989558205745 6.25763357462501 6.06536461839093 5.67022924929696 5.69508671372846 0.182886469668757 0.183611623767895 0.190685385199040 0.198847574164766 0.189277334538229 0.190078373664432 0.187788871718712 0.186198188807409 0.195108068289702 0.18783360819521 0.183376339163113 0.182886469668757 0.186399752023271 0.201107562023778 0.182886469668757 0.182886469668757 0.198563771178030 0.188180998989986 0.189876561982614 3 3 - 22141825 22142327 22142104.727 22141460 22144560 - gene protein_coding_gene FALSE TRUE AT3G59910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44090.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96769.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA92347.2); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84657.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.121040821730301 -1.14074781600005 0.278460541763815 1 0.00971212106598052 11.4726237628951 -0.121040821730301 0.112982029256865
AT3G14510_at 3.82532013067462 3.21283465779486 3.59311152145716 3.01678087783953 3.07907124563491 3.42330283741611 3.21824813322678 3.16901421667484 3.25243994408846 3.30292251358285 3.91887185006905 3.58410600712531 3.67358409385184 3.6898056818439 3.57693166885613 3.10611184665727 3.83549167170231 3.83826748619842 3.31150187971308 0.182099969693966 0.192176485529405 0.182411406462867 0.183693982424913 0.189307486667349 0.187757237868736 0.187664979123037 0.18955373867212 0.184687145943381 0.182235105774787 0.192098802803228 0.182099969693966 0.186271781122118 0.188924703614839 0.187076794715355 0.18710450564005 0.188102988174945 0.198729606327325 0.192318431961284 3 3 - 4867461 4867865 4867756.455 4867385 4868421 - gene protein_coding_gene FALSE TRUE AT3G14510.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT3G14550.1); similar to geranylgeranyl pyrophosphate synthase (GB:AAA32797.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.142826922577025 1.14046370452965 0.278573804839269 1 0.00942147764572243 6.78813598629793 0.142826922577025 0.157490662542973
AT4G02880_at 7.07949279550342 7.07022313792506 6.84404565228833 6.66976354852948 7.07063828333495 7.26866207232685 6.5238012941223 6.75793549506548 6.12871710296763 6.54334122886852 6.06707536528022 6.10808996019296 6.17377575782497 5.96196614523078 5.69636920315344 5.93496206698747 6.60987339024379 5.69311179333199 6.345751183716 0.234272514914196 0.226196869714555 0.228510119269933 0.234049111327164 0.230925265940643 0.23427375274914 0.228523226005261 0.243687370243025 0.231472121831384 0.230062165574323 0.231539072520659 0.229256953271979 0.225599921426492 0.238787496149170 0.237808434012205 0.226863276817894 0.237413945031173 0.241353751939363 0.234733629850676 4 4|0 +|/ 1276881 1277876 1277609.3 1274512 1278165 + gene protein_coding_gene FALSE TRUE AT4G02880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03290.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77463.1); contains InterPro domain UBA-like; (InterPro:IPR009060) -0.101601334885421 -1.14046213228276 0.278574431726369 1 0.00941986940656436 13.0955316842860 -0.101601334885421 0.0610597143673873
AT1G70470_at 3.05773902372321 3.37201059360749 2.42947298223404 3.04879971911362 2.68216407959990 3.01829814213393 3.33912388539347 3.23529927890663 3.14942792892348 3.09496314091581 3.58227988921415 3.64592461320424 3.53495021711486 3.20544866647945 3.7889745323328 3.59639515010062 3.31500163921558 3.16886783452273 3.61304418269232 0.228075543162577 0.226869180909374 0.232163323288054 0.230576809883695 0.221987822116794 0.229869041459798 0.223777949945993 0.22427045500838 0.231489190502613 0.224538482272705 0.228433250298849 0.221987822116794 0.223292752451167 0.223675570684670 0.222625545128634 0.224670341663627 0.230332167243604 0.224600207194131 0.232863867259177 1 1 - 26563236 26563670 26563490.364 26563022 26563786 - gene protein_coding_gene FALSE TRUE AT1G70470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23530.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37652.1) -0.131220448854074 -1.14045677428890 0.278576568076703 1 0.0094143887690008 6.4056344973975 -0.131220448854074 0.134727016253885
AT4G13230_at 2.13380208722126 1.73310309924348 2.01746002844799 2.41746662879679 2.10923927733679 1.80785321595081 2.23669100960606 1.71409548331048 2.29263849706712 1.81167088644995 1.95080001050917 1.93357692418833 2.67581803383368 2.24847471536170 2.48131055459958 1.50459466397541 2.11042453129782 2.24958991372412 1.91687941494267 0.200008444046157 0.196240412436056 0.209611758294629 0.200362118576529 0.207067959646901 0.203464676275307 0.201293587890309 0.197927062920915 0.202663778230372 0.202153030011996 0.200813243121489 0.20574550021358 0.202657314508003 0.198349492232391 0.200702353956953 0.195999231315041 0.194972302152690 0.2023837628363 0.211413990954728 4 4|0 -|/ 7675868 7676597 7676213 7675649 7676676 - gene protein_coding_gene FALSE TRUE AT4G13230.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein similar to late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72100.1); similar to late embryogenesis abundant protein [Picea glauca] (GB:AAA85367.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) 0.135421301702047 1.14037665164532 0.278608516260786 1 0.00933243449251009 4.09690715436728 0.135421301702047 0.143176418311136
AT3G20800_at 7.27197527839644 7.7735812837123 7.40837990184883 7.32644816751358 7.62779271545762 6.93309225048737 7.09712037858906 7.30010386045983 6.37691344873546 6.02402495420587 6.38079928446016 6.85596247745299 6.92893894422055 6.79550012854137 6.71430970738679 6.69062897635075 5.63812279879765 6.26381415325903 6.24648778674964 0.231225254372129 0.222027519959325 0.229602966044705 0.234691254499958 0.223220497092026 0.245234173885168 0.225248610289889 0.228771967249315 0.241629489779537 0.225186636197036 0.221141412302378 0.223978405431340 0.225525324980182 0.229864333957137 0.225857485567248 0.226873825201139 0.263665549583468 0.223204644187340 0.231557475768423 3 0|3 /|- 7271454 7272762 7272060 7271143 7273953 - gene protein_coding_gene FALSE TRUE AT3G20800.1 rcd1-like cell differentiation protein, putative similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT5G12980.1); similar to Os04g0613400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053854.1); similar to PREDICTED: similar to rcd1 (required for cell differentiation) homolog 1 [Apis mellifera] (GB:XP_623701.1); similar to PREDICTED: similar to rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) [Canis familiaris] (GB:XP_853052.1); contains InterPro domain Cell differentiation proteins, Rcd1-like; (InterPro:IPR007216) 0.140466943724558 1.14021209443517 0.278674140898489 1 0.00916412933620014 13.7169708739110 0.140466943724558 0.153046517909891
AT4G21400_at 4.51847685470022 5.13131718040373 5.42869186728819 5.4119445467373 5.58098967235701 4.71321528140924 4.06277384824287 3.34141264002392 4.45324325034335 4.97282546643272 3.69827645916864 3.76064379730412 3.92276604194074 4.10607793194721 3.56411539176348 4.46891381610548 4.89157517340679 4.06281037034172 4.73712790062503 0.228559793912261 0.223384184269271 0.230487853437309 0.227933691842389 0.219918021566971 0.223756964125092 0.225287345588264 0.227393722251253 0.244237541521875 0.225916524701385 0.226012413416361 0.223922969885041 0.228119370031204 0.227062513936484 0.229865061616586 0.221149326206384 0.247472127763128 0.233639803368434 0.223100693887156 4 4|0 -|/ 11399234 11399877 11399423.5 11399142 11401720 - gene protein_coding_gene FALSE TRUE AT4G21400.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G21410.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00970.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.179273522359412 1.14016237408185 0.278693971503159 1 0.00911328023084346 9.1638341923358 0.179273522359412 0.222242087319374
AT1G78360_at 0.888732681894563 0.48977225833537 0.742245761706933 0.805528132674352 0.950568819896911 0.787527925298707 0.829106907708681 0.927401374447825 0.961495718348936 0.799506857358164 0.67748377036051 0.900620248511606 0.634118842096273 1.05078573553071 0.822569085637778 0.954257134819446 0.823340642142786 1.17906366600586 0.352758439887734 0.21788085177841 0.217052708426187 0.219686597704945 0.217052708426187 0.217969480113509 0.223141534397245 0.220019255904201 0.223677604581772 0.217741324216784 0.222448654574199 0.21809121148447 0.217052708426187 0.225562732164892 0.221731947424306 0.219403872587412 0.219459529933672 0.223911103160775 0.224781415611203 0.225071086567384 1 1 - 29487013 29487716 29487401.273 29486963 29487859 - gene protein_coding_gene FALSE TRUE AT1G78360.1 ATGSTU21 (Arabidopsis thaliana Glutathione S-transferase (class tau) 21); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G78380.1); similar to glutathione transferase [Carica papaya] (GB:CAA04391.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.106703619868729 1.13995985236826 0.278774757159118 1 0.008906178494959 1.59504393066362 0.106703619868729 0.0772797518180042
AT3G09085_at 6.72556583263016 7.31748851089992 7.07963936365121 7.42828035918971 8.4072990016041 7.64981367083128 6.92539784365143 7.04550221626504 7.29636185177212 6.79254622046793 6.61128400093807 6.35301947626917 6.72103402882217 6.99045596816327 6.380678799135 7.19279401095838 6.65734871293549 6.81506722474182 7.04695161040984 0.196726916409221 0.200559887762912 0.207734917878817 0.200945782029158 0.209056799612362 0.21935656336772 0.209233585561728 0.199241984446642 0.216802635098425 0.203088960963161 0.203169237506990 0.199548563879014 0.200137347916007 0.216969670622717 0.199092529807463 0.198866959681094 0.220394786756890 0.199247692140757 0.200581012657956 3 3 + 2782256 2782480 2782350.364 2782138 2782745 + gene protein_coding_gene FALSE TRUE AT3G09085.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06841.1) 0.153846607409782 1.13922264828413 0.279068980604791 1 0.00815254167365964 14.2026217691547 0.153846607409782 0.178181781929079
AT4G05260_at 1.84268781422391 1.57613299295913 1.72144890671967 1.93301075759681 1.53462583226509 1.69548979779429 1.78991458120503 1.21310236082153 1.63244123349644 1.54717437372245 1.56139631036596 1.53049884370320 1.55764526316608 1.70615129629817 1.94699142060541 1.38963248869766 2.05479965015898 1.81236699588749 1.51011356844215 0.190780288159351 0.190780288159351 0.197288294820613 0.192362042771159 0.192130040576868 0.192094797916035 0.193186844108416 0.195741690665233 0.199152024046847 0.197285379867188 0.194477366908185 0.197624772593982 0.201768379077374 0.196640904318547 0.205192482399569 0.190825900721007 0.203602436122592 0.192015889090007 0.197134301197624 4 4 + 2693862 2694423 2694078 2693678 2694457 + gene protein_coding_gene FALSE TRUE AT4G05260.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05230.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.123688305674128 1.13918309146014 0.279084774833880 1 0.00811211371100218 3.29239080153021 0.123688305674128 0.119194274065375
AT2G26800_at 8.81885162713632 8.95623722101127 9.00800672097131 9.122522822886 9.28637894188365 9.20694695281996 9.22983106752223 9.41818402193042 9.38622383878443 9.20332254864481 8.9989699153712 8.68881804563692 9.0223180101313 9.22404849717549 8.61643786334109 9.19711962855819 9.07901081847483 9.16299596867232 9.14424387367404 0.10935828038811 0.105171840901995 0.114529708392188 0.104802913241212 0.101593613016052 0.107684871621856 0.10420536482698 0.102056918561446 0.106866028084866 0.107851791904478 0.111275557267331 0.106966052421297 0.101157614448634 0.108051288443467 0.111294476918513 0.104508125366901 0.117415981875019 0.104890525280538 0.105310868779505 2 2|0 -|/ 11436284 11437569 11436825.8 11436100 11439810 - gene protein_coding_gene FALSE TRUE AT2G26800.1|AT2G26800.2|AT2G26800.3 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to MAM1 (2-isopropylmalate synthase 3), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT5G23010.1); similar to putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense] (GB:BAE71196.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891)|similar to putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense] (GB:BAE71196.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891) -0.097847017520378 -1.13912041706780 0.279109800855798 1 0.00804806128661695 18.2525257205808 -0.097847017520378 0.0470043403418856
AT2G42900_at 2.44165176995978 2.30771907211092 2.51106323338120 2.02197328293710 2.14963067708523 2.42547550717897 2.63683095342360 2.95482240663346 2.69222514875822 2.3231665236074 2.98478715043986 3.63462331143286 3.25214730357458 3.6404356243366 3.12148362818494 3.76268770546745 2.36132051810029 2.72898673247493 2.88962124800791 0.224438457269072 0.231415880059906 0.234376702942931 0.223043033784138 0.216063976144687 0.226337833166774 0.219852537213368 0.234529136372121 0.235127595155170 0.216250572857287 0.218547241671425 0.217499319762359 0.227492617605482 0.222232561355658 0.230897825658489 0.223665040950033 0.229874296108995 0.219743925392923 0.226521339034963 2 2 + 17861918 17862400 17862116.182 17861634 17862558 + gene protein_coding_gene FALSE TRUE AT2G42900.1 similar to Os05g0582000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056435.1) 0.121292157286974 1.13860630860456 0.279315151286581 1 0.0075227514404963 5.34155251461009 0.121292157286974 0.114052855077361
AT3G19320_at 0.735582439789934 1.09716786320123 0.881176222088252 0.840452026189922 0.696610194735016 1.17598468118275 0.811578309272042 1.38040402669449 1.55525525616873 0.777627130311709 0.871693541511199 1.34491728835918 0.550197631560672 0.714440875031703 1.04518408902388 1.03587041874159 0.65349140246256 1.34783968914641 0.991966820839907 0.230034231835116 0.228059574442210 0.23926995257614 0.238624449109400 0.233254527507710 0.238518669545173 0.228059574442210 0.228675666670531 0.240872717078732 0.238765946259461 0.235861482843461 0.231742147421014 0.234428841238784 0.231312431872059 0.228989889094753 0.232671251026486 0.229556468436486 0.23618899773155 0.230725259987707 3 3 - 6696403 6696945 6696639.818 6696401 6698079 - gene protein_coding_gene FALSE TRUE AT3G19320.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G49750.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABD32635.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.135228040408786 -1.13818933808969 0.279481788047450 1 0.00709683008445972 1.97923818843742 -0.135228040408786 0.143308182869930
AT4G18990_at 1.03559796642571 0.92109545831744 1.14400363766398 1.0557316440952 0.825598831827776 1.10144285376016 0.451666697445287 0.230317051097938 0.691674941929166 0.63969595532438 0.524272789715672 0.341862274028695 0.358369195329443 0.0871270281849195 0.109804340236284 0.529211816082015 0.734210711544994 0.667980318770661 0.424697036149952 0.191717393146149 0.194934151437649 0.200164901122857 0.225936795755139 0.189962996817033 0.195597149107247 0.191174747687569 0.185630915227425 0.198452793043573 0.203002538057223 0.190063127035291 0.187724415639756 0.19005579673695 0.18554751353727 0.18554751353727 0.192454115033449 0.191746702633735 0.189199654659434 0.19978766061257 4 4 - 10401958 10403277 10402303.273 10401921 10404259 - gene protein_coding_gene FALSE TRUE AT4G18990.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 29 precursor (EC 2.4.1.207) (At-XTH29) (XTH-29) (XTH29) [Arabidopsis Thaliana] (GB:Q8L7H3;GB:O49412); similar to XTR4 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT1G32170.1); similar to xyloglucan endotransglycosylase-related protein (GB:AAB18365.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.102886889975302 1.13805001905251 0.279537482263093 1 0.00695454715092403 1.34791216109806 0.102886889975302 0.066121458144641
AT4G08340_at 0.625687554975018 0.227968525385405 0.470040125247585 0.338332181393923 0.247681935732394 0.609588680121516 0.380787943564239 0.7238491183512 0.693128032884572 0.721046164958525 0.0974934538127891 0.487026878136252 0.400574070259529 0.592262200378551 0.0676207838281754 0.918893778575524 0.619949051116135 0.52707944123974 0.481587881012614 0.215207146178741 0.214869539199665 0.230343080457607 0.220298993084608 0.218891513899197 0.220514769757008 0.219098914986529 0.220443351623091 0.224675476398332 0.224742037948577 0.214869539199665 0.224945546772776 0.220927943728751 0.229426889489149 0.217303265375246 0.214869539199665 0.220520661407066 0.227360038178463 0.227983205045445 4 4 - 5264302 5264759 5264503.818 5264212 5271145 - gene protein_coding_gene FALSE TRUE AT4G08340.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1); similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G42820.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.120610395364339 -1.13782842305480 0.279626085291834 1 0.00672826452020758 1.00088358315653 -0.120610395364339 0.112710925046095
AT1G75860_at 6.67679914589601 7.23104801192006 6.42392018390173 6.54926480969363 7.26993357818936 5.71103781439548 6.69106444836994 6.65823465477093 6.51503920260789 6.8256590842871 7.05513151723411 7.18197772569035 6.35177677094862 7.19553075460126 6.76535939856171 6.59067780442682 5.51658403530234 6.42392341850207 6.89830151310426 0.237499280859379 0.231842817874470 0.243750904566865 0.236821466648793 0.228673217539990 0.259051570412086 0.228767389010519 0.224429315150239 0.260494576328393 0.235764541913844 0.224429315150239 0.224429315150239 0.226771940239912 0.224429315150239 0.224429315150239 0.225948493607275 0.232478384071172 0.240003963662566 0.228153634149941 1 1|0 -|/ 28487922 28488524 28488210 28487824 28489612 - gene protein_coding_gene FALSE TRUE AT1G75860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20100.1) -0.218480278601096 -1.13756751703473 0.279730434001874 1 0.00646188398986824 13.3421395533046 -0.218480278601096 0.287194466735867
AT3G07720_at 7.70050411854092 7.58970221101746 8.39217355729494 8.20505974125276 6.92361662429943 7.19381698788109 7.4318525548221 7.68726338317474 7.0233461841362 7.3911041939665 7.11249738907693 6.97990672169661 7.62679065634612 7.46723352189644 6.8902823951058 7.64173014963947 7.47078922707301 6.83975599084089 6.94234113381706 0.182043419172202 0.186043696153681 0.182803093848795 0.182638362487006 0.188666235245745 0.183916899200152 0.184344204391876 0.189758446421352 0.190353029792462 0.180808185140301 0.181688874564835 0.180239015780744 0.182730579582668 0.188978123157286 0.185619976418114 0.179189272130137 0.189567880151347 0.183325373817501 0.185401492395409 3 3 + 2466476 2467015 2466714.909 2465371 2467239 + gene protein_coding_gene FALSE TRUE AT3G07720.1 kelch repeat-containing protein similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G48180.1); similar to putative D-protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19903.1); similar to Os09g0249000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062670.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.105514456639705 1.13722087122777 0.279869120884662 1 0.00610803742201182 14.8267755275018 0.105514456639705 0.0745404857435868
AT3G23160_at 2.57735350428645 3.58122151623828 2.96607147372256 3.54060215990955 2.89683763186048 3.20660473144185 3.26174661364588 4.23496146780311 3.61274531775661 3.92173673279542 3.77373474623383 3.7047500405836 3.76627087890412 4.124199475736 3.35384577592429 4.07950439220113 3.8023370308292 3.2530172467906 4.11349719306538 0.216188193198603 0.210447745722159 0.210128927982345 0.205953041730299 0.205473523909476 0.208134512825206 0.20327885770014 0.211779136409013 0.219084401026472 0.205963423255200 0.209052711290144 0.210286095242092 0.203707433685294 0.206681638399353 0.211051881206645 0.203664435251180 0.215735934976039 0.208656906889631 0.209508358919306 3 3 - 8260067 8260586 8260337.545 8259862 8262035 - gene protein_coding_gene FALSE TRUE AT3G23160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51670.1); similar to P0650D04.6 [Oryza sativa (japonica cultivar-group)] (GB:CAI44602.1); contains InterPro domain Protein of unknown function DUF668; (InterPro:IPR007700) -0.205872037865971 -1.13711700292444 0.279910687154116 1 0.00600202767422298 7.09060848549993 -0.205872037865971 0.267028410170918
AT2G39720_at 7.47565177380349 7.66558276847596 7.42545197176724 7.5189648570356 7.84827388854206 7.51021729818528 7.46337036297096 7.62898779124711 7.48403999623026 7.11713654863328 7.3104647434431 7.17242308864327 7.44992558770209 7.80477805050117 7.14412908354676 7.35200210522822 7.62332328405762 7.1201514435734 6.93409870065951 0.211738096251927 0.203119092308901 0.205844082532224 0.202643476729588 0.202035638996094 0.212800023172103 0.199427898172703 0.197950927626596 0.211176761798514 0.211622225211752 0.199828016147444 0.197996700033104 0.199512273274769 0.197950927626596 0.216551721696897 0.197950927626596 0.215852379556332 0.211846831771483 0.20754782505205 2 2 - 16574621 16575127 16574914.909 16574287 16575900 - gene protein_coding_gene FALSE TRUE AT2G39720.1 RHC2A (RING-H2 finger C2A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHC2a. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G59550.1); similar to putative RING-H2 finger protein [Oryza sativa] (GB:AAK73147.1); contains InterPro domain Protein of unknown function DUF1117; (InterPro:IPR010543); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.105526710627051 1.13662765097092 0.280106581672295 1 0.00550268717496816 14.8423499665924 0.105526710627051 0.0747407512869984
AT4G15250_at 1.40151584263651 1.17111807230138 1.26457597801677 1.50029976750984 1.29469980350148 1.56337076424818 1.21142828512479 1.07928638295819 1.29054299830434 1.2669401378027 1.23982458328118 1.34426230075401 1.20248757764163 1.82639003373108 1.52708342488491 0.941841498282191 1.47073613414172 1.39357927838506 1.47939626558627 0.214507820387246 0.217118178334418 0.211519877590453 0.216510221698339 0.211582909374844 0.214828306959452 0.223450468158511 0.214545694959312 0.224049238166600 0.225622501041515 0.211519877590453 0.214359455268534 0.214059080559343 0.211519877590453 0.226678971972851 0.211519877590453 0.2201246389361 0.218450375411729 0.222851132483308 4 4 - 8710248 8710801 8710531.818 8709942 8711106 - gene protein_coding_gene FALSE TRUE AT4G15250.1 zinc finger (B-box type) family protein Identical to Putative zinc finger protein CONSTANS-LIKE 11 (COL11) [Arabidopsis Thaliana] (GB:O23379); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT3G21880.1); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to Zinc finger, B-box; CCT [Medicago truncatula] (GB:ABE83395.1); similar to Os02g0724000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047975.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.106274284610232 1.13617556334039 0.280287653286015 1 0.00504151884256188 2.66773789759655 0.106274284610232 0.0770616916201693
AT3G55605_at 3.92648407082355 4.29848532605859 4.03033496638757 3.97692936847216 3.15021234364888 3.54279853585541 3.7038996714781 3.91008874285568 2.71041042581284 3.01501858814415 2.99111642057361 3.02909033209304 2.86332353745560 2.58118279355324 3.28010731711528 3.15125380615479 2.82145494932836 2.83037276619793 2.9422660286001 0.240435215902142 0.238346912959705 0.236985322345530 0.240983522372955 0.237533932939915 0.241985364421291 0.238829936411326 0.238695522181314 0.240691886128075 0.242638263208821 0.236985322345530 0.242766679765148 0.240830936631202 0.240741303324953 0.239242223440381 0.237699721311047 0.247415438223420 0.236985322345530 0.240664418708173 3 3 + 20633829 20634838 20634512.273 20633599 20634981 + gene protein_coding_gene FALSE TRUE AT3G55605.1 mitochondrial glycoprotein family protein / MAM33 family protein similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT2G39795.1); similar to Os01g0143300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041996.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16469.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) -0.115207294878178 -1.13595441186727 0.280376262670448 1 0.00481597679812817 6.73376383877816 -0.115207294878178 0.100591503837369
AT4G11240_at 6.6291463384867 6.7202405076177 6.45206161654417 6.26635308361458 7.0968926032878 6.97870253394186 5.6976467307698 5.95585773147475 5.6501852912904 5.70287250801384 5.72635480091595 5.48607163232322 5.67178611822169 5.3570997816117 5.89172148313142 5.83892551571844 5.8501622574914 5.34191298359201 6.3201811820703 0.24286621470716 0.216938513222375 0.226938872511188 0.225681071391378 0.222227700114887 0.230658277816981 0.232222826354752 0.218624597761884 0.237698474946518 0.224831026857884 0.234147514414915 0.218268006134594 0.219133478380914 0.220565014345187 0.232965742263006 0.218909085974611 0.228150867044616 0.216938513222375 0.222455344802357 4 4|0 +|/ 6848240 6848839 6848418.556 6847108 6849296 + gene protein_coding_gene FALSE TRUE AT4G11240.1 TOPP7 (Type one serine/threonine protein phosphatase 7); protein phosphatase type 1 encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 6 (EC 3.1.3.16) (TOPP6) [Arabidopsis Thaliana] (GB:P48486;GB:Q9SUT7); similar to TOPP3 (Type one serine/threonine protein phosphatase 3), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT1G64040.1); similar to Serine/threonine-protein phosphatase PP1 (GB:P48488); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.101102146713713 1.13569783954596 0.280479091457778 1 0.00455435310232366 12.2429046342591 0.101102146713713 0.0607980269827949
AT1G65840_at 5.3293329910197 5.70217848236059 5.95658311211478 6.12554586394832 4.99238071148943 5.14341261212313 6.44716526153665 6.38103734665597 5.7626383707802 5.60664977670667 5.83963857709476 6.66328125421564 5.93289845425573 6.09596612963173 6.28167549470806 6.11354830340992 5.53090796262457 5.85606566441511 6.15304490225078 0.188405826849966 0.193912403309918 0.186732623727732 0.189766957985160 0.200981766970103 0.194213518600973 0.190604703086837 0.188990491836164 0.205473874989126 0.198147120705642 0.186732623727732 0.186732623727732 0.191864304554309 0.200263882755222 0.198516307956683 0.194748614693460 0.197192659376647 0.191075691515274 0.188079067265809 1 1|0 +|/ 24495713 24496367 24496132.5 24493443 24496687 + gene protein_coding_gene FALSE TRUE AT1G65840.1 ATPAO4 (POLYAMINE OXIDASE 4); amine oxidase similar to ATPAO2 (POLYAMINE OXIDASE 2), amine oxidase [Arabidopsis thaliana] (TAIR:AT2G43020.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); similar to OSJNBb0004A17.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE03599.2); similar to Os04g0671300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054219.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.105988949337877 -1.13566345950977 0.280492872475357 1 0.00451929965671827 11.6997172543012 -0.105988949337877 0.0763690266799881
AT1G54200_at 1.58010286896451 1.77495745284984 1.45653285094846 1.71647360798755 1.35217335107959 2.35970354578625 1.97444049280146 2.22109481028480 1.94998296316837 3.14433256448146 3.72626766233751 4.04907435545086 3.35243947547478 3.57589756393887 4.32821698700918 3.60281865600581 3.29215360562418 3.34256169490092 4.42917463892612 0.247240501960141 0.24566940629402 0.244245567265317 0.250969066949742 0.252151641417089 0.244022764969610 0.255650477233948 0.244022764969610 0.264107103965525 0.244022764969610 0.259933448842745 0.247787319802655 0.250930875750673 0.246558687734609 0.252612193749785 0.248599713349787 0.260691573731297 0.256680659977915 0.272137500274416 1 1 + 20240055 20240586 20240311.182 20239379 20240732 + gene protein_coding_gene FALSE TRUE AT1G54200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13980.1); similar to Os03g0175800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049135.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001071968.1); contains domain Tautomerase/MIF (SSF55331) 0.158876980313045 1.13560943532169 0.280514528786768 1 0.00446421893787929 5.22102260873018 0.158876980313045 0.188104365863927
AT4G16900_at 2.99837560481677 2.72563183434205 2.82004582248633 3.24691769010606 2.97898366420321 2.75239540763585 2.37334060797718 2.55580421630271 3.25986719073251 2.65941589453683 2.61131535571006 2.71402134672088 2.64487536113562 3.03568242023236 2.47322350376675 3.1884891329923 2.33696974192435 2.93263040571093 2.47386620869088 0.232818220130117 0.221522455970829 0.231904087548819 0.222942463742204 0.228421601638365 0.228682159322198 0.221522455970829 0.236347733824679 0.236373647417603 0.222147425884068 0.223299159883501 0.221522455970829 0.230484941515324 0.221522455970829 0.225746411609473 0.225005165113633 0.222000376539032 0.234074650802156 0.22879477929285 4 4|0 -|/ 9512247 9513048 9512538.125 9512026 9516560 - gene protein_coding_gene FALSE TRUE AT4G16900.1 disease resistance protein (TIR-NBS-LRR class), putative similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16940.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16960.1); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) 0.115366028726133 1.13547416073103 0.28056876108839 1 0.00432630769631204 5.57637052590589 0.115366028726133 0.101091768899525
AT1G73650_at 10.0346021412879 10.3473503329860 10.5172823904491 10.5528002027661 10.4706320805990 10.1390032957479 10.0380753915817 10.4135089524970 9.75722822272873 9.57756293885175 9.57708087435917 9.4842078837387 9.85522911436803 9.76283936291536 9.12419186547565 9.72520835985762 9.73023379966654 9.50542976456082 9.3911109635433 0.100981934719177 0.090491655905972 0.0978896105947142 0.0937519826445362 0.0957767055846404 0.094037128221043 0.101832055545389 0.0947037026039525 0.0994894525278716 0.0922226062479214 0.0923203461048451 0.0913364086245268 0.0943930962505233 0.100591589790812 0.099401139589972 0.090491655905972 0.106750722100373 0.097058958191210 0.0913368579133826 1 1|0 -|/ 27692218 27693106 27692616.857 27691784 27693968 - gene protein_coding_gene FALSE TRUE AT1G73650.1|AT1G73650.2|AT1G73650.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18180.1); similar to hypothetical protein MtrDRAFT_AC139526g26v1 [Medicago truncatula] (GB:ABE80157.1); contains InterPro domain Protein of unknown function DUF1295; (InterPro:IPR010721); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.115898603772735 1.13542633152840 0.280587938015742 1 0.0042775492812559 19.8995835167355 0.115898603772735 0.102380659617479
AT4G29800_at 1.98744031528972 1.81500142298764 2.17847589863509 1.97044497074402 1.66972235975568 1.91310591225386 1.83983493982011 1.57691757870593 2.18331739273144 2.12033562766001 2.67001754534222 2.08134025864752 2.26094543088776 2.55958580613484 1.56121518378271 2.21496554186436 2.73203399131239 1.98295916236813 2.2159663554728 0.197693930238953 0.196190851825294 0.196696303330023 0.200936724879314 0.190660029838949 0.197569909398513 0.196677479500797 0.191576162397187 0.19824141100701 0.200078168825587 0.202529192208888 0.192015573828919 0.198444758158216 0.191178317431338 0.193467951578348 0.197734603533022 0.195901617959353 0.190249088256934 0.193775668824367 4 4 - 14590886 14591514 14591123.9 14590837 14592542 - gene protein_coding_gene FALSE TRUE AT4G29800.1 PLA IVD/PLP8 (Patatin-like protein 8) similar to PLA IIIA/PLP7 (Patatin-like protein 7) [Arabidopsis thaliana] (TAIR:AT3G54950.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) 0.106407563783696 1.13540330395960 0.280597171189865 1 0.00425407490408647 4.08441258660596 0.106407563783696 0.077657618713691
AT4G18980_at 2.21349019199091 2.16665370623959 2.95184373272488 2.99067829706643 1.6870993759188 2.53223048828576 1.69911364201483 1.97141705285670 2.12836820171692 2.16088179242944 1.87268052492043 1.56481395592035 1.83179065063427 2.24800685854816 2.16879202529444 1.44616916498519 1.44522026175559 2.38052808368622 2.06110928532590 0.218942884927702 0.221255426033278 0.212658400544085 0.233373526130639 0.222956680520659 0.218347064101257 0.212487853646680 0.214594125047509 0.216054367576668 0.215760947180945 0.212760859484782 0.220455834700435 0.223764208893507 0.218154690758782 0.212859798397008 0.223113944859158 0.214552628655593 0.221754068906136 0.212487853646680 4 4 + 10398966 10399276 10399156.444 10398929 10399523 + gene protein_coding_gene FALSE TRUE AT4G18980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45630.1); similar to hypothetical protein MBP_91N22.56 [Musa balbisiana] (GB:ABF70130.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.140379044725393 1.13540226633797 0.280597587241991 1 0.00425301715792958 4.26983411949166 0.140379044725393 0.154018410112423
AT4G33560_at 1.74639155753566 1.46553648623541 1.89501567901701 1.88935015726992 2.04176813601223 2.14280833899564 2.32087393024562 2.14098931821233 2.64152878363466 2.35097761917715 2.73405442734273 2.41950923528575 2.75228289289332 2.33868888871412 2.17739962349157 2.59874224531086 1.81566601190619 2.57940111444531 1.90431646487534 0.17446737835215 0.175832683603452 0.179625627358884 0.184638723597947 0.177490921259584 0.174242786812743 0.175150190929105 0.175619201151393 0.176542395147791 0.177769047473806 0.174242786812743 0.174841533113537 0.176966719054904 0.175624375860793 0.178077264432643 0.178855041314394 0.182232926566533 0.177536397672677 0.178720588014344 4 4 + 16135468 16135708 16135585.091 16135403 16135917 + gene protein_coding_gene FALSE TRUE AT4G33560.1 similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G14070.1) 0.100907426897230 1.13504762442381 0.280739815010745 1 0.00389154068173314 4.3182962058502 0.100907426897230 0.0603162575035456
AT1G03960_at 3.15878819699095 3.33581051721886 3.00762727721522 3.09056267939420 3.52912772816378 3.81535274548957 3.42783121255464 3.11498040408833 2.76956513917887 3.03800989406858 2.93692513022678 2.90510345420428 2.92917440648011 3.19381858973521 2.60649098358515 2.60529865316982 3.05292896541659 2.80838210183732 2.49085377923649 0.227483040179136 0.217047445570823 0.230047733857669 0.220054088710126 0.223734581051958 0.227442575980535 0.224162674089061 0.225815521549097 0.217047445570823 0.217627248862745 0.221230635138870 0.217047445570823 0.222232920095768 0.224574834944052 0.225953853621303 0.226065764118485 0.228357025561948 0.21775534666785 0.224151799013791 1 1|0 +|/ 1016392 1017152 1016865.333 1013714 1017928 + gene protein_coding_gene FALSE TRUE AT1G03960.1|AT1G03960.2 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28900.1); similar to calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B'' regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G44090.1); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28850.2); similar to putative protein phosphatase 2A regulatory subunit [Oryza sativa (japonica cultivar-group)] (GB:AAK13162.1); similar to putative phosphatase subunit, 3'-partial [Oryza sativa] (GB:AAL31038.1); similar to putative protein phosphatase 2A 48 kDa regulatory subunit isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD34016.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|similar to calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B'' regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G44090.1); similar to putative protein phosphatase 2A regulatory subunit [Oryza sativa (japonica cultivar-group)] (GB:AAK13162.1); similar to Os10g0476600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064850.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.107468686469879 1.13494911594393 0.280779331376695 1 0.00379114922896961 6.13296420667772 0.107468686469879 0.0808029218107039
AT1G65990_at 1.42648668988255 1.11059895250543 0.8144199504614 1.15336993358141 0.836168699747257 0.931008070356245 1.26614840892293 1.41443749956133 1.34629510709774 1.36375942485315 1.12684606249829 1.46135444551251 1.35225131330017 1.49383284211553 0.857840990911781 1.04885344132316 1.74041215835852 1.26265733581048 0.712506689312859 0.196533285234522 0.1937367010318 0.1920262339839 0.193900101644810 0.191194172190491 0.194787856909843 0.194522152721848 0.200170047826525 0.192743794789698 0.197576161267555 0.196067781659494 0.196480397753815 0.200258546188977 0.191194172190491 0.193377608996793 0.193158947693827 0.207462780338376 0.194216858482389 0.191194172190491 1 1 - 24575327 24575839 24575627.818 24575266 24577134 - gene protein_coding_gene FALSE TRUE AT1G65990.1 type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10740.1); similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] (GB:AAD33602.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.109261945436962 -1.13479142942424 0.280842595805808 1 0.00363046254748078 2.33600968270234 -0.109261945436962 0.085772343032947
AT1G70840_at 3.52287896439602 3.22829563380913 3.24088041902262 3.2112955804209 3.01602141543435 2.86607635954029 3.31966848628727 3.25261370321706 3.7049666225012 3.20026956185336 3.91104160988929 4.04245436584752 3.78671838702447 3.96814043753733 3.84087058168987 3.83455820436583 4.01189393951521 4.29057890848251 3.63317038784351 0.228822796464388 0.244737559681606 0.229587121968688 0.230790684258655 0.224419588147676 0.226428777647538 0.235181630077305 0.226931447443651 0.224419588147676 0.227704886551937 0.227787435498159 0.224419588147676 0.236689778954758 0.235733648832544 0.231417125424951 0.224419588147676 0.233647916332373 0.238355396738302 0.225730213373723 1 1 - 26716837 26717638 26717161.727 26716644 26717728 - gene protein_coding_gene FALSE TRUE AT1G70840.1 Bet v I allergen family protein Identical to MLP-like protein 31 (MLP31) [Arabidopsis Thaliana] (GB:Q941R6;GB:Q9SSK8); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.100342055119241 1.13410758567050 0.281117084435263 1 0.00293380722277981 6.9440084427793 0.100342055119241 0.0585923493860568
AT2G24300_at 1.51619709225327 1.42531678400135 1.37108023825265 1.20373528667423 1.26759034106024 1.43383150018897 1.59785207670212 1.25281826145495 1.79324516157978 1.63968315625126 1.65176300506061 1.62617045499413 1.65198607274649 1.25443792134433 1.45915434962067 1.16313627523787 1.69652097707314 1.56835898436978 1.33708267148757 0.176882699925065 0.172446789740608 0.170142088937706 0.185692074442751 0.172573327692984 0.177390470546883 0.171695301460393 0.173604648688209 0.177251090961056 0.171530610414622 0.171612806511121 0.172897687652185 0.173482014635274 0.173293671402383 0.176051403554798 0.168292713090703 0.173158097248924 0.174906029133221 0.171654936223058 2 2 + 10349951 10350422 10350163.909 10347896 10350816 + gene protein_coding_gene FALSE TRUE AT2G24300.1|AT2G24300.2 calmodulin-binding protein similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G31000.1); similar to Os02g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047151.1); similar to calmodulin-binding protein (GB:AAB37246.1); similar to Os02g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046071.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR012416) -0.105024685054613 -1.13381677286410 0.281233877053837 1 0.0026376443379299 2.93302503165451 -0.105024685054613 0.074019673427229
AT2G19950_at 6.52913265805598 6.08811711156271 6.13314777212953 5.68214224228736 6.77043403840653 5.85454160788658 6.16747788771372 6.15702086969844 6.63058439063219 5.79346463748011 6.0634331931807 5.98479994122519 5.55425224564811 5.78550854573273 5.77139454766549 6.06569408805751 5.96345997613868 5.92824595392095 5.83493927046283 0.231380484552605 0.229959911587631 0.229959911587631 0.232099335729702 0.246174026183325 0.237548791446315 0.242466094403219 0.234617835877767 0.242709587837795 0.237074391964147 0.239878845373964 0.237741920245737 0.236070627362662 0.237577982963346 0.234192861021355 0.242044551817044 0.231613518201991 0.229959911587631 0.239069886716189 2 2|0 -|/ 8623452 8624810 8623913.2 8623174 8628486 - gene protein_coding_gene FALSE TRUE AT2G19950.1 Identical to Golgin-84 [Arabidopsis Thaliana] (GB:Q8S8N9;GB:Q6NMI2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18190.1); similar to Gol (GB:Q6GNT7); similar to Os01g0744400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044225.1); contains domain SUBFAMILY NOT NAMED (PTHR13815:SF1); contains domain FAMILY NOT NAMED (PTHR13815) -0.161050793996209 -1.13362829786358 0.281309590123946 1 0.00244573326953601 12.1607157706199 -0.161050793996209 0.192462073019870
AT4G00270_at 5.7250276175318 5.6069103970587 5.67098431690848 5.66985678279636 5.93360549038043 5.76418958969819 5.66697440811679 5.29075997812978 5.52788684098456 5.2743320827912 5.309904459873 5.37548524897964 5.36874831064686 5.72913914020889 5.38105370583049 5.43508102985939 5.44373435102756 5.68856432145852 5.52842180072293 0.165327394182660 0.171484917713662 0.161949606249272 0.163499347997905 0.179620019554638 0.166934077710179 0.170578803032884 0.170057342942694 0.163495676617321 0.171634505620525 0.166021095694017 0.166998912760073 0.161949606249272 0.163455641999656 0.162421942337975 0.170277245621287 0.171334736799843 0.161949606249272 0.168004438561216 4 4 - 117645 118040 117856.182 117152 118577 - gene protein_coding_gene FALSE TRUE AT4G00270.1 DNA-binding storekeeper protein-related similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT2G25650.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.105078928777957 1.13349813089658 0.281361889257015 1 0.00231320761728260 11.1210439371535 0.105078928777957 0.0742708992956482
AT1G35183_at 2.31889568055103 2.18674846511204 2.50013119534592 2.35931368710055 1.86149435094853 2.24750873307250 1.8034881738586 2.18482057147051 2.37627175261541 2.24473665778382 2.24549712428867 2.10130564286141 2.60400518648045 2.38287183998162 2.65389375977580 2.26943394392538 2.40823042691377 2.50944578605213 2.23796896647818 0.148187538900795 0.143416194813362 0.143416194813362 0.158584778792935 0.150283009295132 0.145474548977094 0.149082773326685 0.146187462318438 0.144491019542182 0.148491499691964 0.144696179489365 0.144448533895919 0.147881049458210 0.16100879384933 0.145181200634126 0.147587456277418 0.151684172751036 0.144612510809967 0.144739618665754 1 1 + 12884419 12884543 12884476.727 12884416 12884568 + gene protein_coding_gene FALSE TRUE AT1G35183.1 unknown protein 0.114566720180632 1.13338136229988 0.281408811538692 1 0.00219433311433181 4.52438073522115 0.114566720180632 0.0996701658818378
AT4G10510_at 1.21289256927043 1.09468414370600 1.12148197603237 1.07365252355034 1.08068670468307 0.780491683727022 0.558388510654756 0.811407371123428 1.19607781120487 1.29766816390175 1.22865181709522 1.34148459019170 1.22678234105423 1.26409002085762 1.18237466361283 0.979205601134217 1.32322218816426 1.13612432940668 0.79647196697556 0.197580391609925 0.196198481602844 0.198425590454194 0.201757945342864 0.199279831334673 0.196198481602844 0.196198481602844 0.200913141790699 0.198964410037653 0.202134225669044 0.202487331949797 0.196198481602844 0.202300993649236 0.202119149206901 0.198053107414039 0.199906421760204 0.201709992668062 0.196198481602844 0.201228851261795 4 4 + 6498472 6498978 6498771.727 6495951 6499006 + gene protein_coding_gene FALSE TRUE AT4G10510.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10550.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.104118851610875 1.13319960817025 0.281481859668083 1 0.00200931988124364 2.12020131432692 0.104118851610875 0.071435423047353
AT4G22140_at 5.99734836950073 6.2843526674202 6.21210839094978 6.01236272367101 6.47509842727595 6.0040622313108 6.34335867538397 5.97304431185568 5.04460477503507 5.65831295319739 5.64322224829546 5.87381579335193 5.8984898498169 5.34525575051037 5.97864897148709 5.630583842567 5.71110901299676 5.65847872887403 5.78804830974959 0.192250262658414 0.182366076501067 0.195812669187843 0.185408346476239 0.190215535468725 0.192801508904750 0.184164809897899 0.189532667434129 0.189450987512198 0.186810156412812 0.183513179403467 0.187985086618505 0.192594448879142 0.189691856362462 0.190077411077304 0.184149160394414 0.186777515509619 0.186326779224519 0.184076445847941 4 4|0 -|/ 11728591 11729346 11729022.7 11727738 11730521 - gene protein_coding_gene FALSE TRUE AT4G22140.1|AT4G22140.2 DNA binding similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) 0.123421891335918 1.13309611971499 0.281523458895745 1 0.00190398596826336 11.7699365767034 0.123421891335918 0.120055246399444
AT2G13510_at 1.19632269938307 1.48678860989182 1.09654786661854 1.64140556542926 1.25528892905706 1.33531869015667 1.38292581510202 1.92029322177048 1.47080067418769 1.85540158139372 1.1827468853628 1.29153213425681 1.78217148948340 0.93171711083971 1.92614877666646 1.76693445371201 1.50864752824334 1.76106145571334 1.54173328045118 0.210956247783802 0.208168999889352 0.208219901505345 0.200767766521999 0.200767766521999 0.200767766521999 0.202750349616108 0.211682517131482 0.212779262788951 0.202341631941176 0.209635715384352 0.212415197268976 0.209121299879513 0.206238940140850 0.207738325429129 0.205937852925424 0.210177460715067 0.203946136351189 0.208940773952465 2 2|0 -|/ 5637242 5637832 5637479.6 5637083 5638189 - gene protein_coding_gene FALSE TRUE AT2G13510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13500.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) -0.134108761557128 -1.13290960736002 0.281598443250217 1 0.00171416638538746 2.98511900365725 -0.134108761557128 0.142327214047024
AT1G14940_at 2.19397503333786 2.26718387608032 2.52286746678411 2.01257761143283 1.94454529355149 1.96290072628839 2.41335682792861 2.07902550003215 2.49227813781101 2.49243761191447 2.63764840992687 2.08954186913028 2.25073515112048 2.42070523063366 2.74122503123356 2.10426632830558 2.52880613924037 2.42133829811954 2.53383929167388 0.187442148734611 0.189595606322370 0.187643595487136 0.193739085967831 0.195099243041408 0.188763652917408 0.203081657251596 0.191068270964470 0.197008796422044 0.188368836121196 0.198613243882325 0.188055290874044 0.190816999369150 0.188660116299857 0.188545856104051 0.186283706050466 0.186283706050466 0.191858116158531 0.194774382869358 1 1|0 -|/ 5154775 5155477 5155137.4 5154538 5155558 - gene protein_coding_gene FALSE TRUE AT1G14940.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT1G14930.1); similar to major latex protein [Ficus awkeotsang] (GB:AAQ07269.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.117282120708260 -1.13242832107337 0.281792008319647 1 0.00122445740828681 4.62728820243626 -0.117282120708260 0.106378607744858
AT3G17010_at 1.80212425698088 1.84696414703123 1.69766066866106 1.90889849812419 1.61381745663789 1.64659279825014 2.00548754946062 1.97633074463424 2.16315116276046 1.99002664463461 1.8829275054703 1.92979335515453 2.03147282780067 1.95253291810510 2.38946851530141 2.05743892327131 1.93060099742690 2.31474859169722 2.0296307939294 0.208243825474961 0.206857226654887 0.219404794975703 0.209892202574887 0.207214581026681 0.207889087969785 0.205996156180206 0.209006451119508 0.207237842291758 0.211124480297477 0.213442908467341 0.202737103403371 0.20995568316899 0.221677740692413 0.204986612965973 0.202427584343818 0.223786345589397 0.21006908820534 0.204853017392243 3 3|0 +|/ 5801535 5802250 5801981.9 5800466 5802474 + gene protein_coding_gene FALSE TRUE AT3G17010.1 transcriptional factor B3 family protein transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT5G18000.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE89390.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.095398782635741 -1.13212278040077 0.281914945012767 1 0.000913653044907536 3.87326409233249 -0.095398782635741 0.0381334810972179
AT3G24890_at 2.37794194678284 2.5132830039792 2.33614176683433 2.38725169552639 2.64525122807964 2.29311431284138 3.10767958215869 2.50404669495198 2.19288700348592 2.05020883683016 2.0384490785847 2.23444485195190 2.22652797015461 1.96426878527041 2.52745221449850 2.09692057222995 2.15039132872987 2.03454665776586 2.35282341469664 0.200932476594042 0.200519124833275 0.196333983197258 0.194267583564112 0.193711411808196 0.198292933694205 0.198715525951326 0.194373006819192 0.198071781713581 0.201825588408924 0.198174854127509 0.195243225190599 0.194040622598455 0.199425117132839 0.195794162379292 0.191666306870179 0.200570682463428 0.204899753909423 0.193917737636459 3 3|0 +|/ 9098199 9098708 9098399.5 9098132 9098763 + gene protein_coding_gene FALSE TRUE AT3G24890.1 ATVAMP728 (Arabidopsis thaliana vesicle-associated membrane protein 728) member of VAMP72 Gene Family similar to ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) [Arabidopsis thaliana] (TAIR:AT2G32670.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Histone-fold; (InterPro:IPR009072) -0.124906312710212 -1.13209884863597 0.281924575901078 1 0.00088931173186102 4.69947124592887 -0.124906312710212 0.123501209359559
AT2G42300_at 6.16253999887636 6.29208413350927 6.40231518139188 6.21455808228037 7.26130353729109 7.05869162242725 7.45674869279795 7.47203755804575 6.52051424150982 6.25206056844408 7.50433252343372 7.05197700995733 7.50580055196909 7.0126440102932 6.50571221927499 6.7515456533149 6.55849768205345 6.85155026165521 7.20405134736152 0.18725718062876 0.189030090574147 0.186272859575423 0.189712934317754 0.187854746789893 0.186966195794773 0.190753976541844 0.187318387867778 0.193503017970792 0.190020779386614 0.196083487256905 0.185995100585097 0.196691496020311 0.188656601856238 0.188262417116300 0.182975745867787 0.190210596448040 0.197557162030095 0.182975745867787 2 2 + 17628956 17630747 17629634.455 17628234 17631919 + gene protein_coding_gene FALSE TRUE AT2G42300.1|AT2G42300.2 basic helix-loop-helix (bHLH) family protein|DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G57800.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94659.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0986233066312487 1.13177370820550 0.282055447804578 1 0.000558646499118853 13.6033512882104 0.0986233066312487 0.0528652253596658
AT1G09660_at 4.61932326192633 4.60420174614128 4.52826446786960 4.47351964081213 5.47367441870745 4.94097228524278 5.40485275485359 5.1107251911525 4.58996169928867 4.55599487456107 4.48113189435326 4.31095630330259 4.65424157184474 4.78817997055313 4.1893634492944 4.40596592748380 4.55539090833532 4.44151381180545 4.74873396066472 0.168344687301711 0.163849831684301 0.165211043161949 0.166304558702564 0.165591352304587 0.167973655464746 0.167625708267865 0.163794483034992 0.173136529791185 0.166053598314975 0.165224031327815 0.164990659608810 0.166242222996824 0.164273684919349 0.167261786909639 0.165475748033161 0.166936607422287 0.170492893362479 0.166023613973246 1 1|0 -|/ 3128048 3130769 3129129.55 3127773 3131096 - gene protein_coding_gene FALSE TRUE AT1G09660.1|AT1G09660.2 KH domain-containing quaking protein, putative similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26480.1); similar to Os05g0419500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055572.1); similar to KH [Medicago truncatula] (GB:ABE91933.1); similar to Os01g0886300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045029.1); contains InterPro domain KH; (InterPro:IPR004087) -0.116944283621832 -1.13170215736369 0.282084253968885 1 0.000485889710882481 9.4493949664014 -0.116944283621832 0.105762912863377
AT1G58420_at 3.19305696861702 3.10711140807740 3.09353491092222 2.98776258855821 2.64869227579882 2.54342507520352 1.63383435457118 1.80424723724942 2.59521613651292 2.14784735107201 2.19135243224176 2.29981924822346 2.08497869119177 1.91934830023562 1.89541077106975 2.24008853476380 1.69562170975105 1.88967081313121 1.91278495268616 0.239283193307613 0.259695908389831 0.254365210236643 0.261711859752313 0.245132193457787 0.241777499258678 0.238967960399679 0.248420242218575 0.236788982455278 0.239441817808482 0.251308973560549 0.243523580848659 0.240487936193900 0.237124515209094 0.247528578191611 0.251236146060875 0.261600685351751 0.249281794730282 0.241771140772622 1 1 + 21711100 21711547 21711261.727 21711044 21711783 + gene protein_coding_gene FALSE TRUE AT1G58420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10140.1); similar to Os07g0123800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058800.1) 0.09610569315548 1.13165117113493 0.282104782269270 1 0.000434046308035119 4.74928433204126 0.09610569315548 0.0419264551114692
AT1G18980_at 0.53554658073847 1.17224504195133 1.45014015914948 1.23668285014877 0.833637056518594 0.603201684134209 0.574963629870787 0.960482034582147 0.560447734388674 0.714616813569017 0.46583557872468 0.522450443734868 0.870491512636383 0.59025619701863 0.141292771733317 0.699956048976363 0.883245856035039 0.355138336517732 0.287301430560807 0.204948192124553 0.204948192124553 0.209772153636454 0.204948192124553 0.206372879261499 0.208897777960541 0.210155613262931 0.204948192124553 0.208794188234940 0.220733711017865 0.204948192124553 0.206923583492881 0.207528018730917 0.209748666999400 0.208780957002324 0.210218785694210 0.21091971314758 0.205888604107 0.209101301025234 1 1 - 6557421 6557719 6557559.636 6557245 6558036 - gene protein_coding_gene FALSE TRUE AT1G18980.1 germin-like protein, putative Identical to Germin-like protein subfamily T member 2 precursor [Arabidopsis Thaliana] (GB:Q9LMC9); similar to GLP4 (GERMIN-LIKE PROTEIN 4), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT1G18970.1); similar to germin-like protein [Ananas comosus] (GB:AAM28275.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.132700399684021 1.13161266135947 0.282120288012041 1 0.000394890307132689 1.46429838097587 0.132700399684021 0.139807804520676
AT3G44910_at 1.04178437347625 1.30871695000365 1.39364665370300 1.36023512403058 0.905147319492109 0.91338483374623 1.06787715212765 0.997119254136334 1.07533021289069 1.01606684719118 1.04499015971166 1.07319588185618 1.21463905674966 1.16115731663133 1.37504543533979 1.01714567332586 1.07740119136817 1.56312508708926 1.01408027154125 0.174150233873543 0.175740764748830 0.170640726299995 0.177064785502453 0.170640726299995 0.170640726299995 0.171143491534895 0.177578422712322 0.178320137430332 0.182791909056847 0.175970976395817 0.172190037856249 0.186234049608565 0.172943120495627 0.171069489632364 0.184354788992257 0.177535241230412 0.172371224859787 0.173737110679295 3 3 - 16403078 16403566 16403311.636 16403049 16405240 - gene protein_coding_gene FALSE TRUE AT3G44910.1 ATCHX12 (cation/H+ exchanger 12); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX10 (CATION/H+ EXCHANGER 10), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G44930.1); similar to ATCHX9 (cation/hydrogen exchanger 9), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G22910.1); similar to ATCHX11 (cation/H+ exchanger 11), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G44920.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91505.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.0974537075124765 1.13144885326473 0.282186251789049 1 0.000228344881117892 2.23648725048949 0.0974537075124765 0.0481589294950572
AT3G51310_at 8.73000583253195 8.8323862498204 8.43323823063 8.57106168730966 9.12964077507454 8.55321845949003 8.86202155924562 8.77637373071622 8.49808672048436 8.84333266825864 8.51511146028419 8.80515713326226 8.65994902666424 8.66686289529345 8.4236715376467 8.52259667971625 8.61035008492722 8.70018287756826 8.81211340418312 0.116341220656193 0.11764912616343 0.131472944901688 0.119833061898488 0.120588227780251 0.119968212717509 0.119014644563169 0.116739967582923 0.127475784049688 0.119074033893352 0.118971548115441 0.118443326146145 0.119787598248224 0.119599898275851 0.125066461483938 0.123522659893266 0.126078405525069 0.123069000154056 0.120148229002021 3 3|0 -|/ 19055715 19056426 19056112.25 19055502 19060361 - gene protein_coding_gene FALSE TRUE AT3G51310.1 vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75850.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17790.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF93242.1); similar to Os03g0801600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051593.1); contains InterPro domain Vacuolar protein sorting-associated protein 35; (InterPro:IPR005378) -0.116633053670441 -1.13127844402694 0.282254886453074 1 5.51077712203085e-05 17.4014080537168 -0.116633053670441 0.105133420344318
AT1G53450_at 5.81780592782633 6.25553889653944 6.53284110045949 6.18260718521149 6.99808138778448 6.8843788843038 6.22368542246213 6.20512165347556 5.21054270498265 5.48019092120218 4.35177682111109 4.30501534322862 5.34175932725761 4.78622984420798 4.35822748845455 5.1891376342677 5.26746682188979 4.6418049025312 5.90619337673092 0.216166207219494 0.212274887178116 0.214493017038677 0.215742150625670 0.210713059219049 0.210713059219049 0.22083324082202 0.221575684565019 0.245846439351733 0.217876363638286 0.218875638040170 0.214947636292816 0.211994144768332 0.224323609803381 0.221518446668605 0.211858803541318 0.244423273779249 0.227253669872339 0.215633017453302 1 1|0 -|/ 19955432 19956301 19955894.889 19954674 19957776 - gene protein_coding_gene FALSE TRUE AT1G53450.1|AT1G53450.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14830.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS72350.1); similar to Os01g0729900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044138.1) -0.114096281869697 -1.13126986519181 0.282258342038695 1 4.6387106810708e-05 11.5437506941781 -0.114096281869697 0.0990421368556783
AT2G01140_at 8.29854320979577 8.34257211229914 8.43150195183946 8.64390901074436 7.75196892319272 8.06161416082224 8.18388737719128 8.50282010930173 7.76974006622276 8.19265150935572 8.54297939153476 8.3357066674969 8.11558771426945 8.52206114225005 8.46601123108237 8.28423385063468 7.90813818147809 8.05771333547882 7.89271640221938 0.162145054313604 0.159637414169369 0.158863585731792 0.162533251061864 0.154343342097106 0.159996449663696 0.153177339865406 0.158710058908481 0.171340462064470 0.160673082114444 0.160235511501284 0.153952728237136 0.156991037156899 0.163497042389082 0.161381333115357 0.154715645588294 0.168271011488987 0.154449753087263 0.159847669408379 2 2 - 95081 95548 95295.818 94810 96652 - gene protein_coding_gene FALSE TRUE AT2G01140.1 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to Os01g0118000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041857.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) 0.108822044757451 1.13089617137802 0.282408899050396 1 -0.00033343519329343 16.3924804061704 0.108822044757451 0.0855971059013106
AT1G04670_at 2.02789578679376 1.79229381687836 2.00665036642911 1.77456747013673 1.50565891939999 1.75580255471932 1.57593916429541 1.81304412958725 2.10495947281938 2.41027734878247 2.21519113162937 1.65123006952501 1.91205896846990 1.82437545120267 1.99459800226388 1.81007755996481 2.03727867281305 2.31467381014831 1.91597577059975 0.191074698837222 0.194260452311745 0.190343353570992 0.193332068874264 0.193093681532595 0.196018478308234 0.190065269088669 0.190647274330808 0.191650724399163 0.190065269088669 0.193868343309939 0.194400083166729 0.200897545078736 0.193072396137223 0.199445555175875 0.195723493441017 0.197199878916532 0.195327238727899 0.190065269088669 1 1|0 +|/ 1301998 1302487 1302287.333 1301860 1302671 + gene protein_coding_gene FALSE TRUE AT1G04670.1 unknown protein -0.107712734599572 -1.13050665159686 0.282565898351388 1 -0.000729239778213153 3.83831802052299 -0.107712734599572 0.08266170486281
AT1G19230_at 1.06911958286862 0.659063164276848 1.10415072127078 0.624481901924757 0.318640658301019 0.974318420054787 0.972625485618886 1.24824145767870 0.852007896210367 1.04191384524165 0.84233736434452 0.692192468810627 0.917086059640208 0.91175080799358 1.15394046398394 0.758908403537098 1.13352724131620 1.05819073633569 1.08267119491088 0.196580134205664 0.194431353082643 0.194431353082643 0.195225220622964 0.194431353082643 0.200302103143735 0.200670302591074 0.194978971352368 0.201466999780746 0.196946977466476 0.201451387790528 0.200451944395984 0.19664962616274 0.194446344580365 0.199765108310707 0.194761718718633 0.194431353082643 0.202181895916205 0.197995335418684 1 1|0 +|/ 6648083 6649103 6648457 6644180 6649366 + gene protein_coding_gene FALSE TRUE AT1G19230.1 respiratory burst oxidase protein E (RbohE) / NADPH oxidase similar to respiratory burst oxidase, putative / NADPH oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G11230.1); similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F), NAD(P)H oxidase [Arabidopsis thaliana] (TAIR:AT1G64060.1); similar to respiratory burst oxidase homolog [Solanum tuberosum] (GB:BAB70750.1); similar to NADPH oxidase [Nicotiana tabacum] (GB:CAC87256.1); similar to respiratory burst oxidase homolog [Nicotiana benthamiana] (GB:BAC56864.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623) -0.145285224715996 -1.13037589891309 0.282618614493102 1 -0.00086207849848241 1.83417484334906 -0.145285224715996 0.164548136328224
AT3G12210_at 4.65093234718085 4.81827132900735 5.03155251872083 4.7183501244130 5.65075095229448 5.81685182903417 5.35456909866329 5.82392106875988 5.18211330868096 4.97048094323297 5.05062771213751 5.24557836526492 5.0137388341455 5.1676057525324 5.59887175227804 5.24814102555138 4.80457375924866 4.84509312306336 4.93910203496857 0.226850869141855 0.223422468483229 0.223422468483229 0.228556784781499 0.233392466791456 0.232933103210410 0.226438224576597 0.227909001909025 0.225665074102691 0.228171811899454 0.224743968067093 0.226378917047658 0.223942734785436 0.233385809066387 0.230727502441931 0.228019814898479 0.234329140295951 0.223422468483229 0.223422468483229 3 3|0 +|/ 3894898 3895830 3895291.778 3894785 3896073 + gene protein_coding_gene FALSE TRUE AT3G12210.1|AT3G12210.2 similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG04365.1); contains domain no description (G3D.1.10.340.10); contains domain SUBFAMILY NOT NAMED (PTHR21521:SF2); contains domain FAMILY NOT NAMED (PTHR21521)|similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG04365.1); similar to Os03g0728600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051148.1); contains domain no description (G3D.1.10.340.10); contains domain SUBFAMILY NOT NAMED (PTHR21521:SF2); contains domain FAMILY NOT NAMED (PTHR21521) 0.116833128389832 1.13035229074857 0.282628133513387 1 -0.000886062043396585 10.3093220182535 0.116833128389832 0.105829520299388
AT2G19300_at 1.85844313385910 1.90378449488228 2.02869687055254 1.78052439077525 1.45670003000525 1.79234914855250 1.57213464513822 1.51593932016894 2.02741686564860 1.95954591487499 2.08429742303807 1.49508305907916 1.64587711390775 1.41702655315631 1.8065663430024 1.74996205081585 1.68423806495746 1.75452552125233 1.90980934327462 0.182757015992585 0.179586945735505 0.179586945735505 0.182367921609398 0.180924138484811 0.181150022722289 0.186711237124855 0.179586945735505 0.199107427233673 0.186767731306429 0.179586945735505 0.187205504515170 0.180815271934069 0.185522338569530 0.182616662908990 0.188048877310355 0.184146913355066 0.189621784663527 0.186523791412619 2 2 - 8375135 8375273 8375192.091 8375122 8375301 - gene protein_coding_gene FALSE TRUE AT2G19300.1 unknown protein -0.104450740161160 -1.13014975197268 0.28270980913516 1 -0.00109180536616582 3.57371536628371 -0.104450740161160 0.073311410136546
AT2G14850_at 5.17886069836873 5.31119019545386 5.35499280382055 5.7025338275009 6.22294640638038 5.14835253181821 5.31354725726658 5.64858439478515 5.19368933795281 5.26054260142928 5.35639504530508 5.2556768189638 5.22430906346556 5.52660522077609 4.90163377206424 5.42025280665692 5.16304056524331 5.32928606437909 5.08823394979962 0.230062961418125 0.228762859636111 0.236422776945622 0.232612066295077 0.228762859636111 0.239558565248572 0.230140827670163 0.235985485611868 0.233400895046771 0.23146333670402 0.228762859636111 0.228762859636111 0.228762859636111 0.236393737575248 0.241929707642945 0.229661909277135 0.234362304459041 0.244006051849104 0.229388666083130 2 2 + 6393799 6394332 6394064.909 6392954 6394652 + gene protein_coding_gene FALSE TRUE AT2G14850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33890.2); similar to hypothetical protein MA4_8L21.20 [Musa acuminata] (GB:ABF70007.1) 0.167744356228813 1.12997751770628 0.282779278560110 1 -0.00126674228101564 10.7116119557580 0.167744356228813 0.205148091730286
AT4G19510_at 5.26743815978809 5.90787444631998 5.90276687881711 5.90353695884013 6.14915564858605 5.466799585325 5.92264257961663 6.0079353156226 5.52151278153594 6.01167320641574 5.48878862191372 5.36173840605539 5.61201870934988 5.31405561030906 4.80328724415219 5.71234551280733 5.52843334652295 5.23107792004276 5.71355095301705 0.219788981215005 0.219536213028208 0.229016301184906 0.228233753577631 0.218734838085692 0.217824178334127 0.216636165548741 0.226818033625073 0.227254546801959 0.222844456211242 0.216636165548741 0.222974485940044 0.216636165548741 0.222964239440221 0.232600378859621 0.232758016224790 0.233434623573978 0.226305614114959 0.222171667091932 4 4 + 10637576 10638933 10638101.545 10633715 10639011 + gene protein_coding_gene FALSE TRUE AT4G19510.1|AT4G19510.2 disease resistance protein (TIR-NBS-LRR class), putative similar to CSA1 (CONSTITUTIVE SHADE-AVOIDANCE1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G17880.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G12010.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.144175999853416 -1.12970220180279 0.282890352648388 1 -0.00154633554804173 11.3812089391396 -0.144175999853416 0.162620184699773
AT2G33720_at 0.860527169865617 1.14617814850558 1.27407030575052 1.08316800863987 0.925541944364723 0.66853748628057 0.772253060110827 1.04582863197366 1.34826128512300 1.19679684818715 1.09591915110549 1.35235844400249 1.54325980958992 1.35539579966712 1.43084043990943 1.48055364900094 1.72791371305611 1.27260955500072 1.11434100883742 0.240604956200193 0.237698501915230 0.239994064003483 0.237698501915230 0.237698501915230 0.240015445826164 0.238106587345191 0.240969538098168 0.237698501915230 0.242176910208288 0.250540275498557 0.243741772622907 0.243040074451613 0.240026876313691 0.249058546075308 0.238518237034313 0.239432806210712 0.254287510235912 0.242262439340402 2 2 + 14271500 14272028 14271802.455 14270808 14272278 + gene protein_coding_gene FALSE TRUE AT2G33720.1 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78640.1); similar to hypothetical protein MtrDRAFT_AC136679g10v1 [Medicago truncatula] (GB:ABE92942.1) 0.109594644881169 1.12937709962497 0.283021556105643 1 -0.00187642074752259 2.28559111154428 0.109594644881169 0.0880600102677074
AT1G71250_at 0.600893059680186 0.256738499282134 0.148983210135492 0.274607696150402 0.367632582024178 0.596976718740544 0.485880252730205 0.160267201608206 -0.352838712145250 0.529037318533552 0.417818785686277 0.424557754486252 0.243693681113688 0.561560237850074 0.248159726257686 0.0107408305869651 0.526316897942746 0.696547816764063 0.240263749595276 0.200828991516201 0.202700411178687 0.206643650323647 0.204768002772154 0.201810000152501 0.203751686633295 0.200309761249635 0.205549465160944 0.219401541892992 0.204155352358855 0.203895589578959 0.203275925037632 0.204452687946869 0.200309761249635 0.209015946663727 0.200309761249635 0.202580556959488 0.200309761249635 0.206584857386203 1 1|0 +|/ 26864515 26865218 26864904.9 26863780 26865388 + gene protein_coding_gene FALSE TRUE AT1G71250.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G08460.1); similar to Os05g0419800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055574.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96893.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) 0.111729489722790 1.1292100741109 0.283088981916015 1 -0.00204597778558446 0.626495028375832 0.111729489722790 0.0936490337966132
AT1G01490_at 10.9481272801693 11.0072309628154 11.4155303097555 11.4159200414458 11.5835968439947 11.4450501735672 11.3926646798832 11.4984269208364 11.5700878490917 11.8268966801851 11.8562428428995 11.4569471054943 11.8428228747630 11.7982887390750 11.0423526442205 12.0022068319370 11.6990008638596 11.3839017588679 11.7046827517960 0.0688657059186823 0.0671054729135893 0.0686178860439097 0.0682980321777578 0.0679365137536568 0.070360736820063 0.0682377554090539 0.0701117568420249 0.071403553272024 0.0664324383856233 0.0697387634979234 0.0676325050217417 0.066439132379474 0.0706175843545822 0.0688735523822223 0.0663366187156697 0.0728258007419293 0.069250076240959 0.0677845238839475 1 1|0 -|/ 180404 181386 180624.7 180059 182357 - gene protein_coding_gene FALSE TRUE AT1G01490.1|AT1G01490.2 heavy-metal-associated domain-containing protein|metal ion binding similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.0940382892733633 1.12890041251774 0.283214020757139 1 -0.00236028145463507 23.0062065105571 0.0940382892733633 0.0318506291615821
AT3G49450_at 0.746152684497422 0.745545139810906 0.74270028680743 1.03977746263800 0.566181410459556 0.835494390358679 0.505342217884785 0.610672369125467 0.745208416024166 1.17035596078144 0.777950567061529 0.839772871235137 0.792280150024901 0.846301584477574 -0.0578333298468777 0.612445949578607 0.705885762567684 0.929575896559557 1.18209394511985 0.180418670049482 0.179071914222295 0.179506307554564 0.187578819531705 0.181756119759905 0.185669649686189 0.180272030080990 0.180507365327215 0.180173162013622 0.179887300881942 0.181308053381745 0.188880855212582 0.180375901125172 0.179138698149207 0.180209225317876 0.188266114951931 0.184105301234589 0.177651841185555 0.178540937115385 3 3 - 18348326 18348797 18348598.273 18348290 18349483 - gene protein_coding_gene FALSE TRUE AT3G49450.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G31470.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.103822528890809 -1.12888368759483 0.283220775361672 1 -0.00237725519974319 1.58065834791399 -0.103822528890809 0.0717455374491354
AT4G20870_at 5.02602024853102 5.68362822637278 5.11830515577344 5.42680702242659 6.29445801808485 6.42966202306354 7.08184295423048 7.3388115795717 6.59126825739216 6.43148569843192 7.8633062389235 7.76844690942718 7.02634283811799 6.91632166396557 7.79826630103706 6.8282322257551 6.49266076736941 7.1959516464608 6.50881068906236 0.284057674188041 0.267803732727223 0.281043205187052 0.283828441259160 0.263311133951025 0.27041362955455 0.275205605422649 0.263311133951025 0.283531866352797 0.271481567528769 0.27002523945582 0.269124599006385 0.279252439433067 0.264062769077598 0.276502829209809 0.268741060959387 0.274003731238925 0.27969547046117 0.269861324812384 4 4|0 -|/ 11174644 11175452 11175221.4 11174461 11176892 - gene protein_coding_gene FALSE TRUE AT4G20870.1 fatty acid hydroxylase, putative similar to FAH1 (FATTY ACID HYDROXYLASE 1), catalytic [Arabidopsis thaliana] (TAIR:AT2G34770.1); similar to Fatty acid hydroxylase, putative [Medicago truncatula] (GB:ABE90051.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Fatty acid hydroxylase; (InterPro:IPR006694) 0.130200914123603 1.12885954402792 0.283230526313861 1 -0.00240175761541861 12.9232982145956 0.130200914123603 0.135374177567995
AT3G22800_at 1.05203342566676 0.996675056140728 1.27494455916890 1.11323034196070 1.13535500855800 1.20512871466447 1.03132441715632 0.933122641198908 0.834942825213595 1.80477504740093 1.49647971702491 1.45980821315714 1.31445560680635 0.997127332405396 1.48827461422198 1.50978075292568 1.41755851165312 1.10332100654118 1.37343214910298 0.233858120063687 0.228166723418330 0.245037458038867 0.239564357783253 0.22807016983212 0.239723042637694 0.232118375836514 0.233766813960177 0.24874832010785 0.229501962268443 0.237578898226194 0.23299034977064 0.238597891565135 0.231713723769992 0.230231420111098 0.230668425722195 0.235026837703458 0.233631713142386 0.235220585456215 3 3 - 8063070 8063546 8063357.545 8062895 8064563 - gene protein_coding_gene FALSE TRUE AT3G22800.1 leucine-rich repeat family protein / extensin family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to extensin precursor-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91812.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0947549082417365 1.12871452454224 0.283289101339257 1 -0.00254892401341922 2.43576046718825 0.0947549082417365 0.036187876144847
AT3G26370_at 6.92076241717765 7.31917575373134 6.84744169841762 6.89526241595412 7.02281304746494 6.63760970553686 6.78655590261253 6.75826049370647 5.1840740804431 6.26873569972833 6.68186763998984 6.49704402133845 5.95726906402555 5.73406847785552 6.15352713210995 6.19757028815332 6.13383890134015 5.72304017606302 5.98883430851772 0.24284900063443 0.239814301653707 0.239014767409588 0.235631372813389 0.236705593199543 0.251739060605725 0.235718577596675 0.238960545099982 0.26044759517322 0.243059002333769 0.252028488838465 0.242230293111323 0.236413495111700 0.235631372813389 0.236057074192944 0.244150618452952 0.248097550634004 0.243649542873596 0.238538855148288 3 0|3 /|+ 9660364 9660948 9660567.111 9657981 9661165 + gene protein_coding_gene FALSE TRUE AT3G26370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65470.1); similar to Os02g0158800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045959.1); similar to putative axi 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD46055.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.112744962374742 1.1285137615792 0.283370207260394 1 -0.00275263499237743 12.8728149670781 0.112744962374742 0.0963841854750926
AT3G29800_at 1.87750634614093 1.92512553078035 2.23058181974789 2.15903464522272 1.73553021851578 1.89792269553312 1.63681337221099 2.0920841060078 2.25681622159873 2.15635514370422 2.45673240478213 1.94606168063694 2.12469827877668 2.15387982216255 2.53080535014954 2.34884703899820 2.16160834698261 2.08370124349671 1.98276651559206 0.220117468173482 0.211026531630405 0.216259594870543 0.214998367313231 0.211026531630405 0.218334636288389 0.211026531630405 0.212680132283772 0.225033566530913 0.211026531630405 0.215671164174884 0.213427674233528 0.211026531630405 0.214842285012492 0.211026531630405 0.216059035119284 0.221200307757861 0.211026531630405 0.213633978129978 3 3|0 +|/ 11723321 11724421 11723694.5 11722575 11724582 + gene protein_coding_gene FALSE TRUE AT3G29800.1 AAA-type ATPase family similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G17740.1); similar to Os05g0588900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056478.1); similar to putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAT37998.1); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.108348741543180 1.12841132989385 0.283411595400494 1 -0.00285655999049417 4.12321037395987 0.108348741543180 0.084960736022982
AT4G11050_at 1.36166943253012 1.5317674768705 1.43799348963222 1.12583792934865 1.46046421453368 1.40051399973774 1.84711432452314 1.14127526352290 1.88053817833859 1.89847067445207 1.63593455945472 1.69985419986407 1.69332266268331 1.77338467643170 1.95024702344577 1.84024832782311 1.76498676870240 1.93603815750347 2.02456168546112 0.200810903185934 0.196353173857721 0.201006782479349 0.210071558905128 0.203895734727790 0.200816530490570 0.208253005000236 0.199586181769282 0.203966702562039 0.204287939254879 0.209740566504082 0.205767924766671 0.205852321246244 0.196353173857721 0.202409468726571 0.204499982024805 0.201719542218882 0.202150802470714 0.196353173857721 4 4 - 6747511 6748318 6748033.545 6747463 6751307 - gene protein_coding_gene FALSE TRUE AT4G11050.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 19 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 19) [Arabidopsis Thaliana] (GB:Q8L7I0;GB:O82513); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G64390.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G48930.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G32990.1); similar to endo-1,4-beta-D-glucanase [Pyrus communis] (GB:BAC22691.1); similar to endo-1,4-beta-glucanase [Glycine max] (GB:ABC94542.1); similar to endo-beta-1,4-glucanase [Prunus persica] (GB:CAI68020.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -0.131012840905306 -1.12834086422883 0.283440070192461 1 -0.00292804871045294 3.27396729620695 -0.131012840905306 0.137159031196738
AT2G46410_at 2.44543096941690 2.20546496776618 2.7862064046563 2.75493794743542 2.01181657468087 2.43077268825289 2.12306461283460 2.11772970950102 2.53335974307587 2.74986042384898 2.63257672408626 2.24487522708146 2.63325584314923 2.59930452964909 2.89044192811131 2.39281890834721 2.81409115386061 2.07378285338105 2.49389386775497 0.176793679210968 0.178900010353185 0.174512310149325 0.175831295650900 0.178286207871513 0.174240996058268 0.177455548261606 0.179019136131289 0.197867887451679 0.180242433427137 0.189719687548581 0.177236861014817 0.178527517598169 0.179310090953664 0.174240996058268 0.185517650487804 0.183966761906250 0.181059051548364 0.185214062077517 2 2|0 -|/ 19056409 19057234 19056832.333 19056245 19057414 - gene protein_coding_gene FALSE TRUE AT2G46410.1 CPC (CAPRICE); DNA binding / transcription factor Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. Identical to Transcription factor CAPRICE (CPC) [Arabidopsis Thaliana] (GB:O22059); similar to TRY (TRIPTYCHON), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G53200.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.107891444970848 1.12831695013690 0.283449734249943 1 -0.00295230921384415 4.9231853547438 0.107891444970848 0.0837330824575072
AT2G25940_at 2.96160349804715 3.31067578905724 3.16863304427176 3.40328424002257 3.33359443754432 3.37743580834915 3.14835591542722 2.93107406179307 3.34122142223538 2.97196530540414 3.44503386759467 2.90327028817944 3.23532647070539 3.28916889965106 3.19818043362325 3.4396803272531 3.22225374302011 3.10571248387933 3.43060652741656 0.193482273340256 0.202016967627658 0.200554041415853 0.197610432598654 0.208178034055256 0.194649781458648 0.199143620189034 0.199024431511275 0.203598625833808 0.193482273340256 0.196427645234263 0.193482273340256 0.204877108408119 0.193482273340256 0.20234144356631 0.200627388472360 0.19762867895399 0.199450589294730 0.197942804863956 2 2|0 -|/ 11070625 11071453 11071097.3 11070379 11073106 - gene protein_coding_gene FALSE TRUE AT2G25940.1 ALPHA-VPE (ALPHA-VACUOLAR PROCESSING ENZYME); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. Identical to Vacuolar-processing enzyme alpha-isozyme precursor (EC 3.4.22.-) (Alpha-VPE) [Arabidopsis Thaliana] (GB:P49047;GB:O82806); similar to GAMMA-VPE (Vacuolar processing enzyme gamma), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT4G32940.1); similar to vacuolar processing enzyme-1b [Nicotiana tabacum] (GB:BAC54828.1); similar to unnamed protein product [Homo sapiens] (GB:BAC86022.1); similar to aspara (GB:BAA76744.1); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) 0.107353397842690 1.12818315779773 0.283503806523149 1 -0.00308803228446175 6.44321179894255 0.107353397842690 0.082277641535432
AT1G63450_at 1.36444434768161 1.15817446442899 1.6345258361196 1.33955065823288 0.903200728005866 1.18974102936843 1.42145581188355 1.47884071460044 1.40616919240123 1.31207951574412 1.58941149270351 1.52180878741434 1.60290264848190 0.90583916084046 1.35404655528432 1.33626681946372 1.17969642263329 2.07951457687334 1.9930523011723 0.196609654285857 0.194907870243060 0.194849847906029 0.189892455997869 0.194696865730918 0.186649469558598 0.193669233405927 0.186736295133192 0.191181635475528 0.18894298083223 0.194754854218064 0.191238652778637 0.190982717027113 0.193461325616789 0.203530286109797 0.188565237320337 0.204122441952317 0.192300441812597 0.198317509247953 1 1 + 23537593 23538068 23537781.636 23535074 23538234 + gene protein_coding_gene FALSE TRUE AT1G63450.1 catalytic similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G41250.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE92010.1); similar to Os03g0144800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048945.1); similar to Xyloglucan galactosyltransferase KATAMARI1 homolog (GB:Q8H038); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.106611066763822 -1.12801279661397 0.283572669670713 1 -0.00326083389320586 2.81955143765738 -0.106611066763822 0.0802339337535415
AT3G60380_at 5.37625325125157 6.02239208390642 4.97919468395753 4.7881679692972 5.5521951653773 5.80749512224717 5.84600835358581 6.03475609743456 5.49007522168007 5.93827184957146 6.24040252026875 6.70142568441956 6.05836228461836 6.42478550441523 6.39308418146554 6.30521518051148 5.2719440061103 5.757821582828 6.1513948319639 0.218108891499481 0.220825445400995 0.226417663144731 0.228894812719367 0.224192134061564 0.237620061454731 0.221023954473708 0.220871471986176 0.231656011536197 0.223405737245535 0.221152865102242 0.221040731578727 0.229026298526319 0.218597968547518 0.223898138010417 0.21965912345746 0.225706613582023 0.220238305685167 0.215629172688796 3 3 - 22327908 22328340 22328135.909 22327888 22330241 - gene protein_coding_gene FALSE TRUE AT3G60380.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G16790.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83694.1) -0.126936530491809 -1.12754097602229 0.283763455835541 1 -0.00373930790145871 11.5528298837913 -0.126936530491809 0.128898471421762
AT3G15357_at 0.508185580519551 0.654692338720802 0.767412846730264 0.694653800401108 0.356745172149215 0.5936199207039 0.854695347269656 0.465476948682710 0.536589584577404 0.513300026822573 0.860728698455558 0.752578827276397 1.17305038081859 0.420850998641744 0.564672054245355 0.665033556444444 0.990722532037055 0.743827143758982 0.56470616751725 0.211251916500456 0.211015369129914 0.214428072709069 0.215722970877221 0.213503159594276 0.211143677553900 0.210852278321494 0.214872936107508 0.212416140131235 0.231106345752792 0.21357239169468 0.210014488178689 0.217171073125249 0.214065558388124 0.215380421786806 0.210014488178689 0.2113706219284 0.215804264486647 0.221298751368574 3 3 + 5187197 5187434 5187300.727 5187123 5187717 + gene protein_coding_gene FALSE TRUE AT3G15357.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to hypothetical protein PF14_0191 [Plasmodium falciparum 3D7] (GB:NP_702079.1) 0.107789906092649 1.12708908920810 0.283946274600001 1 -0.0041974217755798 1.26675105286324 0.107789906092649 0.083776818610461
AT1G48900_at 9.50085346050393 9.60693578499386 9.725976936856 9.68178459354872 9.72848146827294 9.70799034514997 9.63190933186081 9.45526662890593 9.30416295235299 9.16511741813125 9.30652465698405 9.33623801089358 9.26028864236351 9.16155068872636 9.38078137870306 9.24721904906367 9.28878365362152 9.0975198345397 9.22917189162009 0.0901595582585652 0.0900867075315581 0.0900709488264062 0.0895115384397211 0.0911783209995252 0.0925411904028058 0.0954105682419306 0.0896313211300203 0.0881984568970373 0.0905324591981737 0.0919322701144485 0.0896466976330609 0.0898306436679107 0.090082766044121 0.0874928597038582 0.0881911999238437 0.0897418129463548 0.0954090758639225 0.0931477106752508 1 1|0 -|/ 18088642 18089386 18088926.889 18088450 18091547 - gene protein_coding_gene FALSE TRUE AT1G48900.1|AT1G48900.2 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) Identical to Signal recognition particle 54 kDa protein 3 (SRP54) (SRP-54C) [Arabidopsis Thaliana] (GB:P49967;GB:Q93W49;GB:Q9FVP9); similar to ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT1G15310.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to GTP-binding signal recognition particle SRP54, G-domain [Medicago truncatula] (GB:ABE77897.1); similar to signal recognition particle 54 kDa subunit (GB:AAA66200.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain Signal peptide binding (SRP54) M-domain; (InterPro:IPR004125); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle protein SRP54; (InterPro:IPR006325)|Identical to Signal recognition particle 54 kDa protein 3 (SRP54) (SRP-54C) [Arabidopsis Thaliana] (GB:P49967;GB:Q93W49;GB:Q9FVP9); similar to ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT1G15310.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49966); similar to signal recognition particle 54 kDa subunit (GB:AAA66200.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain Signal peptide binding (SRP54) M-domain; (InterPro:IPR004125); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle protein SRP54; (InterPro:IPR006325) 0.0946814265256304 1.12687061265857 0.284034695789226 1 -0.00441885798029473 18.8762401487932 0.0946814265256304 0.0366406026285489
AT2G44660_at 2.7436345572611 3.69483205724254 3.76907084225566 3.75282452787867 3.33309103148975 3.25285280290283 2.86915707374364 3.40664812835319 2.6777937657898 2.76532242531908 2.56951779844882 2.94125773540004 2.95896888865624 2.54558456976392 2.51121713665389 2.71340465754303 2.27477930531890 2.86637455907520 2.66920798060171 0.242585253407258 0.233974610197863 0.231144907698446 0.229519894822647 0.232671380193814 0.235968934436386 0.234625073650781 0.229935941998098 0.234148356448699 0.236761837809905 0.229519894822647 0.229519894822647 0.232358188381961 0.229519894822647 0.230443112305111 0.229519894822647 0.250623795513771 0.243701209591379 0.234246586445659 2 2|0 -|/ 18428200 18429185 18428580 18428171 18429902 - gene protein_coding_gene FALSE TRUE AT2G44660.1 ALG6, ALG8 glycosyltransferase family protein Identical to Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3- glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP- dolichyl glucosyltransferase) [Arabidopsis Thaliana] (GB:O80505); similar to ALG6, ALG8 glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G38460.1); similar to Os02g0688500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047779.1); similar to putative glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD07664.1); contains InterPro domain ALG6, ALG8 glycosyltransferase; (InterPro:IPR004856) 0.158460935551126 1.12666853110929 0.284116500593596 1 -0.00462364749649224 6.0411369469381 0.158460935551126 0.189601538655599
AT2G48080_at 1.42559090680933 1.40131293083776 1.78782051649023 1.59183104763835 1.75648953833014 1.93764752243186 1.63912850536542 1.72411880929543 1.77051281707707 2.01122689490287 2.09891615389825 1.55739332379113 1.41665893934472 1.31330722293959 1.99692597027920 1.59744351294577 1.66158963598039 2.23456649282646 1.50211888356364 0.235185842519690 0.236285943162946 0.238148153600713 0.235812663681708 0.234323919877763 0.235469741338234 0.235333550188213 0.234886461857715 0.237014181637401 0.243818384440799 0.2385736115323 0.236064370352653 0.242196169794738 0.238835037042267 0.235662779134790 0.232920032493081 0.237836231735392 0.241022495530956 0.232920032493081 2 2 - 19672279 19672980 19672650.636 19672060 19674162 - gene protein_coding_gene FALSE TRUE AT2G48080.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02940.1); similar to Os05g0401500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055490.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.2); similar to Os10g0116900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064055.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.0971116630659102 1.12614238045887 0.284329577540527 1 -0.0051567153314136 3.40593564965742 0.0971116630659102 0.0486535605474964
AT4G13240_at 1.50308471072638 1.25674970811996 1.42919918804744 1.44031652378878 1.03799923651958 1.37080586655822 1.39728402657201 0.996091119057827 0.897868757832163 1.15526555270959 1.10628216107336 1.3961287380651 0.763834170671431 1.25077346474793 0.9489281927678 1.33413690277606 1.29282489216648 1.50801043274671 0.957743776952922 0.197062242237156 0.196517336118183 0.197644216918388 0.198118039634729 0.197291746073155 0.201811455109053 0.196517336118183 0.198488904489811 0.210591817613287 0.198669008493567 0.196703979439586 0.196517336118183 0.196517336118183 0.199263569492033 0.199416575437565 0.196517336118183 0.205395200130584 0.199709950326357 0.20056297465884 4 4 + 7681602 7682311 7681988.455 7680149 7682410 + gene protein_coding_gene FALSE TRUE AT4G13240.1 ATROPGEF9/ROPGEF9 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF8/ROPGEF8 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT3G24620.1); similar to Protein of unknown function DUF315 [Medicago truncatula] (GB:ABE82772.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) 0.113883326410713 1.12613149890801 0.284333985581124 1 -0.00516773790428571 2.40581174669465 0.113883326410713 0.0997912678713572
AT1G60080_at 3.88676853405637 3.81849984322387 3.63542635166739 4.14385939403466 3.44477006073546 3.81476534440641 4.03712804735274 4.03752758638549 3.06570437442979 3.33037594523835 3.00581118269447 3.0128470724915 2.85143704071596 2.95770275782483 3.46081916283405 3.15581156434072 3.5373631580253 3.37136729435117 3.26314334078145 0.263344880444403 0.266723211117693 0.256946921526061 0.264851208486065 0.256231866351818 0.256231866351818 0.256231866351818 0.264237970163803 0.278107387970455 0.265554524483196 0.256231866351818 0.257575501436366 0.256231866351818 0.258677770030172 0.267838125574717 0.256238740057994 0.263030307177748 0.258520633430708 0.267856432550534 1 1|0 -|/ 22156440 22157412 22156787.778 22155895 22158254 - gene protein_coding_gene FALSE TRUE AT1G60080.1 3' exoribonuclease family domain 1-containing protein similar to 3' exoribonuclease family protein [Arabidopsis thaliana] (TAIR:AT3G60500.2); similar to 3'-5'-exoribonuclease/RNA binding protein-like protein [Solanum tuberosum] (GB:ABC01886.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247) -0.117936015516876 -1.12599071827521 0.284391019599336 1 -0.00531033557932648 7.0467862073876 -0.117936015516876 0.109457785174091
AT2G31400_at 11.1867164767699 11.2429775491360 11.3146028678441 11.3652912967664 11.3867283985556 11.1694184263999 11.0582897683379 10.8694508050814 10.8264734812267 10.9124299174603 10.7307083728372 11.1071948060446 10.9173594508753 10.7365140903471 10.7074553522949 11.1080946374412 11.0330310836670 10.7442461507186 10.9900796485612 0.070486998872103 0.070486998872103 0.070486998872103 0.070486998872103 0.0709696184601977 0.0730478409372086 0.0710785535717878 0.0742575953096291 0.080313766375594 0.0731046883043572 0.0721211779051702 0.0717245195730161 0.070486998872103 0.0726882804870096 0.07276442742235 0.0707655806167203 0.0781544219429105 0.0772541046063344 0.0729834691501516 2 2 - 13394291 13395212 13394625.545 13394081 13397783 - gene protein_coding_gene FALSE TRUE AT2G31400.1 pentatricopeptide (PPR) repeat-containing protein similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2), binding [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98950.2); similar to Os12g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067027.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0977830374195117 1.12597494333672 0.284397411001815 1 -0.00532631326313338 22.0968027030002 0.0977830374195117 0.0515163716904097
AT1G48850_at 9.1126632825369 9.21462648436849 9.51469686336974 9.40121786732166 9.02034591804554 8.6481300776744 9.7497688175767 9.56370556555277 9.11523907484333 9.09871592632933 9.1930451977903 9.48832222094866 8.7937639058492 9.20339323889483 9.25744026788559 9.13495234922858 8.72018186793804 8.97418590638706 8.91177682160719 0.104788757745667 0.100126177801266 0.105128945517390 0.102950304934305 0.106053908303649 0.114466357625789 0.100126177801266 0.101832892838610 0.104106610267124 0.103833884548947 0.101755031366537 0.101076525411016 0.103391797331404 0.105319749524836 0.103023064373814 0.104438753825078 0.107522937353989 0.102715988803965 0.103251562431638 1 1|0 -|/ 18068842 18069760 18069215.7 18068573 18071758 - gene protein_coding_gene FALSE TRUE AT1G48850.1|AT1G48850.2|AT1G48850.3 EMB1144 (EMBRYO DEFECTIVE 1144); chorismate synthase Identical to Chorismate synthase, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase) [Arabidopsis Thaliana] (GB:P57720;GB:Q570J9;GB:Q93ZI3); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative [Arabidopsis thaliana] (TAIR:AT1G48860.1); similar to Chorismate synthase 1, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate phospholyase 1) (GB:Q42884); similar to putative chorismate synthase [Fagus sylvatica] (GB:ABA54870.1); similar to Chorismate synthase, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate phospholyase) (GB:P27793); contains InterPro domain Chorismate synthase; (InterPro:IPR000453)|Identical to Chorismate synthase, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase) [Arabidopsis Thaliana] (GB:P57720;GB:Q570J9;GB:Q93ZI3); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative [Arabidopsis thaliana] (TAIR:AT1G48860.1); similar to putative chorismate synthase [Fagus sylvatica] (GB:ABA54870.1); contains InterPro domain Chorismate synthase; (InterPro:IPR000453) -0.105171672066941 -1.12570301149589 0.284507604849254 1 -0.00560171281574884 18.3469299730351 -0.105171672066941 0.0767001507573438
AT3G05720_at 0.414534146247538 0.722724368452336 1.02895109850906 0.282076510345046 0.397245061504726 0.275730669008432 0.624079499703192 0.247102590068252 0.910794183012464 0.681951799588833 0.78196519535609 0.347796119339308 0.369560520145921 0.430321210069164 0.476753030123347 0.554546133802126 0.636165490463074 0.215880729597931 0.658660364170935 0.193277824531391 0.182344562155642 0.191505517478834 0.190186271453768 0.183378399227790 0.191737422687089 0.182344562155642 0.184109294211480 0.192234751682075 0.191023080514317 0.184778165242752 0.188618460873425 0.199576119925897 0.184329308911977 0.18942029931977 0.184726412609535 0.192387999108792 0.19278498284218 0.192168144599511 3 3 - 1688014 1688849 1688499.455 1687998 1691742 - gene protein_coding_gene FALSE TRUE AT3G05720.1 importin alpha-1 subunit, putative similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) -0.139977272460651 -1.12505189181453 0.284771589554863 1 -0.0062609262349057 1.11260166091459 -0.139977272460651 0.155718448492324
AT3G04280_at 1.85590792848035 2.00866071031244 2.03010988721356 2.30655396714272 1.86283831794544 2.5429326846356 1.70904353700636 2.32686710405614 1.82933126139636 2.13246239324906 2.25635544770931 2.23883084449144 1.90252106169723 1.86693000126844 2.29827773046787 1.82927986973688 2.35634952300042 2.20499499522790 2.14848381254755 0.197732574695532 0.193860683622512 0.201068218093994 0.195593391098447 0.198839818791874 0.194262908584099 0.192792413659349 0.199645558706283 0.209157730285874 0.193776845849422 0.195405881698766 0.196435069929645 0.204712110381096 0.193245637851687 0.194439626942852 0.196201605985414 0.198110564213253 0.198147206368818 0.193163809959487 3 3|0 -|/ 1130203 1130603 1130451.8 1129951 1131101 - gene protein_coding_gene FALSE TRUE AT3G04280.1|AT3G04280.2|AT3G04280.3 ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22); transcription regulator/ two-component response regulator|ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22); two-component response regulator|ARR22 (ARABIDOPSIS RESPONSE REGULATOR 22) Encodes an atypical subtype of the ARR (Arabidopsis response regulator) protein family. ARR22 is more similar to the receiver domains of hybrid kinases than other response regulators. Identical to Two-component response regulator ARR22 (ARR22) [Arabidopsis Thaliana] (GB:Q9M8Y4); similar to ARR24 (ARABIDOPSIS RESPONSE REGULATOR 24), two-component response regulator [Arabidopsis thaliana] (TAIR:AT5G26594.1); similar to response regulator protein [Brassica napus] (GB:AAC62225.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.146461086369726 1.12467599260671 0.284924077241825 1 -0.006641363491946 4.15834006206454 0.146461086369726 0.168138351908232
AT4G30890_at 8.25569917964955 8.35986402301361 8.13938145532129 8.24234971372135 8.2663285987877 8.09126639669582 7.9247309652919 7.86417163042398 7.59131706669792 7.15969826961377 7.54012535446545 7.56458896480761 7.57273699430995 7.43441581668107 7.34579384733549 7.73840749154349 7.39190980735737 6.85137541852997 7.21819527160225 0.180124521720660 0.184007499566601 0.187521404944479 0.193602025340357 0.193544111748602 0.177363733741768 0.194487731720545 0.180800562988513 0.187779710536807 0.190421762593094 0.177483046149218 0.174903193208613 0.179063204243309 0.204012149250933 0.178524649290036 0.176607252625064 0.184335385540068 0.192386564881486 0.188678764567577 4 4|0 -|/ 15036393 15037225 15036731.8 15036102 15039269 - gene protein_coding_gene FALSE TRUE AT4G30890.1|AT4G30890.2 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT1G17110.1); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAC83574.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.095282050388801 1.1244694042781 0.285007908947867 1 -0.00685040390619207 15.5194687026215 0.095282050388801 0.0408669182067349
AT3G33530_at 8.03496080495924 7.9621348446938 8.02307098354331 7.78897213705641 8.28075374044924 7.94564873330716 7.79792160698343 7.60739441847218 8.20929062770075 7.86831508222708 8.23126773894903 8.21542377629932 8.06638565089214 7.95729108224827 7.82266571240645 8.06863527312235 8.25119232817804 8.33077593428624 8.11812366475073 0.142462173347421 0.137961720066872 0.136831320626017 0.130675243100987 0.12762966682054 0.140960615586750 0.136286956754689 0.140805760871538 0.159737592056423 0.136312119745289 0.128728519513191 0.134069141826139 0.131643008534217 0.150582945912343 0.14148772373102 0.129377500233908 0.146575001729323 0.135164787974001 0.128963553796717 3 3 + 14103420 14104292 14103864.375 14096340 14104656 + gene protein_coding_gene FALSE TRUE AT3G33530.1 transducin family protein / WD-40 repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26610.1); similar to bromodomain and WD repeat domain containing 2 [Mus musculus] (GB:NP_758459.1); similar to Os02g0137000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045826.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.105860020983373 1.1244081181999 0.285032781957558 1 -0.00691241169053458 16.0217060646534 0.105860020983373 0.0790581183991893
AT4G11170_at 1.05341192335533 1.21104346655652 1.17158220839922 1.12849500812245 1.07565986037667 0.903643594095607 1.00542846523089 0.670186763602602 0.593015677424052 0.88643565773918 0.696585232119461 0.724042167376087 0.891602890816876 1.09254098858934 1.02688633751774 0.631677765879309 0.578492419123058 0.80903298776994 0.575000096976968 0.179194309821623 0.180789050965931 0.187008156353932 0.178963938968656 0.178466432852936 0.175333569494801 0.182201497298395 0.175333569494801 0.183542821667806 0.180106775765065 0.191371968438130 0.184246442823743 0.179950434020335 0.185419889960445 0.180393759504858 0.179470343029650 0.181209629974511 0.180230048582545 0.187819029691421 4 4 + 6816548 6816856 6816740.545 6811123 6817126 + gene protein_coding_gene FALSE TRUE AT4G11170.1 disease resistance protein (TIR-NBS-LRR class), putative Identical to Putative disease resistance protein At4g11170 [Arabidopsis Thaliana] (GB:O82500;GB:Q9T016); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G65850.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G49140.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G41540.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.103183983832196 1.12428321342341 0.285083479864016 1 -0.00703877923809859 1.77301878256526 0.103183983832196 0.0710748807940882
AT2G39000_at 9.51682596164309 9.56989531152469 9.63117100861417 9.62508458485014 10.2852416949790 9.87754412399318 9.46771057353972 9.25278639221679 9.71753411252684 9.28852616883123 9.43589593029492 8.93417795153998 9.28020223177979 9.31243813774829 9.1287816806777 9.42635355910488 9.369862746762 9.23925150452068 9.36282730768601 0.118101843464041 0.119031107022702 0.129134073670672 0.12810894009592 0.123329960910172 0.135022699840518 0.118378755179525 0.124742008150919 0.120382666711428 0.126994916274257 0.119888653788742 0.122098201505220 0.135142894892796 0.124592140465717 0.129423073468333 0.116083664763879 0.129632916654752 0.125103166063019 0.125303143834852 2 2|0 -|/ 16293589 16294319 16293936.3 16293414 16295048 - gene protein_coding_gene FALSE TRUE AT2G39000.1|AT2G39000.2|AT2G39000.3 GCN5-related N-acetyltransferase (GNAT) family protein similar to Os02g0806000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048446.1); similar to hypothetical protein slr1906 [Synechocystis sp. PCC 6803] (GB:NP_440447.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182)|similar to Os02g0806000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048446.1) 0.106265199083441 1.12414056309146 0.285141389077342 1 -0.0071830868498779 19.0143656218292 0.106265199083441 0.0802912310665785
AT3G59610_at 1.44457072468053 1.34136636347231 1.60842174541478 1.36543331203125 1.47882512520393 1.55311309281200 1.50867975455481 1.14136694121958 1.74245482964065 1.49385054844168 1.73539464740686 1.67209168394106 1.91106475729737 1.72101206148740 1.93193517513803 1.55399349408010 1.24996710940042 2.30465672026614 1.83556705578304 0.183978387364276 0.177528713253936 0.185556924260107 0.179214108714936 0.181434965278083 0.179876614690677 0.181732072031933 0.183451205622166 0.177528713253936 0.182462912724258 0.18052878562152 0.183906301660835 0.187547591800779 0.183932515466305 0.177528713253936 0.184130448878549 0.187807856160913 0.186354531971484 0.180312612477771 3 3|0 +|/ 22031558 22032116 22031830.6 22030530 22032285 + gene protein_coding_gene FALSE TRUE AT3G59610.1 F-box family protein / jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT3G59590.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE93721.1); similar to myrosinase-binding protein related protein [Brassica napus] (GB:AAC08051.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.105921342194531 1.12406161778727 0.28517344100099 1 -0.00726294322141185 3.15554143279813 0.105921342194531 0.079328515339871
AT4G21160_at 9.27966777109541 9.3888475758028 9.47105268797923 9.55056972977033 9.76858576945939 8.98168604519931 9.47332168575148 9.36357941032475 8.63771565102367 8.83756179698188 9.18190892476964 9.00978651587605 9.0967664191227 9.18648522705661 8.72215644080968 9.07092075244136 8.38720070568024 8.77103989046138 8.7202109519125 0.132967022723550 0.135792501179581 0.144315066692154 0.136198855275230 0.133563697375322 0.150683781494900 0.132967022723550 0.142630874313128 0.162795007185047 0.133644082214343 0.139819106526799 0.133961617471490 0.132967022723550 0.145125051743123 0.142756033422131 0.137010435883548 0.156147356578760 0.149161675312876 0.133182424501975 4 4 + 11285628 11286516 11286052.909 11284157 11286777 + gene protein_coding_gene FALSE TRUE AT4G21160.1|AT4G21160.2|AT4G21160.3|AT4G21160.4 ZAC (ARF-GAP DOMAIN 12); ARF GTPase activator ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to AGD13 (ARF-GAP DOMAIN 13) [Arabidopsis thaliana] (TAIR:AT4G05330.1); similar to C2; Arf GTPase activating protein [Medicago truncatula] (GB:ABE87454.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.131536545123156 1.12311660631856 0.285557333262054 1 -0.00821852299322612 18.2397201225061 0.131536545123156 0.139467214697624
AT1G56090_at 5.48404626620995 6.02753756852152 5.66190489892306 5.29451244642841 6.58212035069702 6.14524463540201 5.6737230937131 5.78826901241091 5.84276914758411 5.66265189784082 5.33755397092763 5.19799758230792 5.52201866146224 4.99730231430914 4.92139657343664 5.78555781283184 5.4275112420835 5.1822810819144 5.70091404789815 0.199641277113344 0.203128516051918 0.200560755052015 0.202613564276522 0.198703502402526 0.204036110887463 0.201333360343161 0.203799644100572 0.200218101262676 0.213368999727683 0.202229873435981 0.197840110936513 0.203451010915432 0.214055527608354 0.210982076416365 0.205975753392142 0.211688798173685 0.207659160170924 0.214079764405691 1 1|0 -|/ 20981661 20982301 20981913.4 20981360 20983022 - gene protein_coding_gene FALSE TRUE AT1G56090.1 tetratricopeptide repeat (TPR)-containing protein similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to H0525G02.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86311.1); similar to Os04g0616100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053875.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.130720514274888 -1.12300050121794 0.285604526179200 1 -0.00833588353384529 11.3481185020467 -0.130720514274888 0.137830317549512
AT3G42960_at 1.58900668554868 1.24630592339340 1.44825222055584 1.82017740041754 1.31864101101617 1.65298055673617 0.965714186326118 1.84484965499496 1.10648185353908 1.47268268182217 1.95157535815374 1.52089612296396 1.62426766849582 1.73934243583544 1.06350361504793 1.63856045144821 1.91570424196631 1.56676768932584 1.81754445204766 0.187936543855130 0.185220492068184 0.186676298556371 0.186274373710976 0.191621023887316 0.188583186091780 0.184614617788645 0.187652974348885 0.189717674333492 0.204447430386797 0.185462825980332 0.18913112157541 0.186558714255473 0.191161071541542 0.189403435305699 0.189367570420652 0.191132391975196 0.191731039022322 0.191043647176615 3 3 - 15029742 15030358 15029971.273 15029683 15030673 - gene protein_coding_gene FALSE TRUE AT3G42960.1 ATA1 (ARABIDOPSIS TAPETUM 1); oxidoreductase Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G26760.1); similar to STA1-12 (GB:AAB42054.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.155275610025331 1.12290963660247 0.285641463866707 1 -0.0084277241005355 3.03231438506075 0.155275610025331 0.184807007603959
AT1G34380_at 5.84784725402187 5.03747019178857 4.91676061256906 4.78221023182603 4.30969363187615 3.64398907897197 2.92887209289407 2.94645277600831 3.172509667237 2.57331407642468 2.66259138852961 2.6040219160811 2.95683155636756 2.93052594417689 2.58258891026742 2.63528239925501 2.86085575161177 3.01874746324891 2.34205787339293 0.274544763067726 0.266958133869067 0.268302178918139 0.275817869561816 0.268188866572975 0.26683873256803 0.265048993192027 0.262029598511432 0.27156270397525 0.266314269066120 0.262657665335416 0.260675946828604 0.269310048991189 0.264583111750679 0.262307441376120 0.263572741493951 0.260675946828604 0.260675946828604 0.263931788979393 1 1 - 12552823 12553490 12553180.2 12552633 12554298 - gene protein_coding_gene FALSE TRUE AT1G34380.1 5'-3' exonuclease family protein similar to 5'-3' exonuclease family protein [Arabidopsis thaliana] (TAIR:AT3G52050.4); similar to putative DNA polymerase I 3'-5' exo domain [Oryza sativa (japonica cultivar-group)] (GB:BAD82085.1); similar to putative DNA polymerase I [Oryza sativa (japonica cultivar-group)] (GB:BAB86222.1); similar to Os01g0874800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044959.1); contains InterPro domain 5'-3' exonuclease; (InterPro:IPR002421); contains InterPro domain 5'3'-Exonuclease N- and I-domain; (InterPro:IPR000513) 0.154236468653340 1.12257517697845 0.285777457972106 1 -0.00876572640090445 7.04035758634975 0.154236468653340 0.183003684442311
AT4G34260_at 7.52057614260516 7.56783389543498 6.56067100506793 6.4523366499014 8.16853120929981 7.71810745912035 8.32782778007928 8.11686075400963 8.8450536547271 8.32976347134298 9.73234884541795 9.18073882378361 8.67241163745363 8.92652726509846 9.36251997685363 8.68740544578887 8.13959166586654 8.9615508088255 8.37802853946346 0.197609617342751 0.199345448663160 0.213527198092818 0.213882659804935 0.203191418627366 0.200479096478356 0.197584885898504 0.196667120421493 0.195183016149263 0.200999782636274 0.198772449815328 0.197228067574899 0.191777090720667 0.201717057676048 0.191978463827845 0.191777090720667 0.205549898307654 0.201756241365432 0.194936633352688 4 4 + 16400787 16401563 16401200.182 16398032 16401814 + gene protein_coding_gene FALSE TRUE AT4G34260.1 similar to Hypothetical protein [Oryza sativa] (GB:AAK98716.1); similar to large secreted protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66023.1); similar to large secreted protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66022.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928) -0.109045737696689 -1.12213222314125 0.285957643662110 1 -0.00921325187399691 16.2918441271801 -0.109045737696689 0.0884711006259633
AT3G10200_at 1.39646478900905 1.25719094031592 1.42022492318372 1.53289461761221 2.00972858314550 1.04747441466944 1.46484414443170 1.35241269291012 1.25573591699069 1.87530121372268 1.17987188074106 1.63678609968762 1.69487574650911 1.72269979615441 1.46020150631533 1.57116066294585 1.84530461696062 2.01481488916950 1.31134628735866 0.177613810142045 0.181244167731779 0.177214855695148 0.183244216342885 0.177214855695148 0.186146219886055 0.181629511112321 0.177214855695148 0.184876110092538 0.187330342691808 0.186793450045821 0.180417748526065 0.181539386304963 0.185645476621701 0.186754651818586 0.182046900805857 0.182754346980860 0.190853914635906 0.178284380144675 3 3|0 +|/ 3159137 3159908 3159509.6 3157613 3160193 + gene protein_coding_gene FALSE TRUE AT3G10200.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G04060.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Os05g0378800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055389.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.147386210052891 1.12210553776631 0.285968501594616 1 -0.00924020828656047 2.99590882441027 0.147386210052891 0.170497542303065
AT4G28200_at 5.38420976635968 6.09805646636113 5.61686295053352 6.14291215132651 6.38140958351987 5.65484133935817 6.02347610883364 5.88328161202301 4.59873445011025 4.50143148808433 4.54255959341694 4.93926268608324 4.64260777961681 4.72101851521099 4.34441771965463 4.85293603971197 4.78162005359705 4.33118194040608 4.15698618027107 0.223148058096619 0.222717929418784 0.230257730946297 0.223233413975098 0.224495050987605 0.239770521347482 0.2182491257828 0.225469013342814 0.234606209907974 0.224549324593435 0.218149348110691 0.221916488161824 0.225926392360428 0.222815510933754 0.221263119636666 0.220229210911544 0.235937844003821 0.228092896062173 0.225642735195046 4 4|0 -|/ 13987825 13988546 13988191.5 13987608 13990456 - gene protein_coding_gene FALSE TRUE AT4G28200.1 similar to Ribosomal protein L29 [Medicago truncatula] (GB:ABE89112.1); similar to Os02g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045609.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.163575176298576 1.12209711419243 0.285971929103508 1 -0.00924871731358312 10.4298818708482 0.163575176298576 0.199865833943062
AT2G30800_at 4.45105080490277 4.46068845387213 4.62606312055325 4.48440674358237 5.13352977838542 4.65481321927571 4.71493047811507 4.52881392261436 4.72007218714377 4.69383893171587 4.75101631024591 5.12109984274406 4.71085760771648 4.73648335201927 4.77868939527686 4.75351260186374 4.9506506857804 4.63162958189512 4.89364993101958 0.228250968766906 0.233042910227492 0.234675772518360 0.223852479004656 0.232966750284405 0.232809166892372 0.231601537315673 0.224371143833592 0.239021702364162 0.2268629005979 0.231711960654241 0.225073516075754 0.22420148006376 0.240250319020186 0.222063593812891 0.221942772996991 0.233810618073263 0.222762158081509 0.222711271508062 2 2 - 13127722 13128222 13127969.909 13127430 13133847 - gene protein_coding_gene FALSE TRUE AT2G30800.1 HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family. similar to NIH (NUCLEAR DEIH-BOXHELICASE) [Arabidopsis thaliana] (TAIR:AT1G06670.1); similar to Os01g0767700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044362.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL52525.1); similar to putative RNA helicase A (GB:AAB01660.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.110443853069716 1.12183061975399 0.286080380688948 1 -0.00951788962096656 9.4185017845722 0.110443853069716 0.0922185440742617
AT3G62780_at 4.64800730411217 5.14106020413757 3.96167124830324 4.21176266313111 3.35878104074724 2.82999582346126 2.12285903194992 1.98342802744358 2.47727720144548 2.38506413086746 1.97855690689214 2.34430300549399 1.94116814413517 2.04093114740054 1.52974634380000 1.64368939695450 2.18591195093006 2.33031143905164 2.25978425227004 0.266072064274885 0.277656631417697 0.281992821322252 0.279714223327320 0.288136763578466 0.269993413000231 0.256028403467058 0.256028403467058 0.264401846562135 0.265462869435311 0.260216628299417 0.256408268710315 0.258721403071372 0.256028403467058 0.263465430538437 0.258301129458671 0.284155884577889 0.256028403467058 0.258284535710735 3 3 - 23233011 23233491 23233228.545 23232820 23233970 - gene protein_coding_gene FALSE TRUE AT3G62780.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G16510.1); similar to C2 domain-containing protein / XYPPX domain-containing protein [Musa acuminata] (GB:ABF69997.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.129000258847754 -1.12181219973184 0.286087878005253 1 -0.00953649290346648 5.71888024459072 -0.129000258847754 0.134571749603397
AT2G34210_at 1.26873031152454 1.08584080094505 1.21109017955879 1.33810732458042 1.02112288260096 1.15314686736028 1.20875300227410 0.863316769174759 1.72230242603924 1.13467132782094 1.79737481495273 1.56872215698592 1.20270662263398 1.57620218296116 1.48094775198518 1.51094155918933 1.51472937971372 1.69914891251941 1.37244129254333 0.179766041107385 0.172121060103745 0.17687594581895 0.174010441857046 0.175055431000802 0.171698999511023 0.173155804927315 0.175299541338513 0.172337004609497 0.178414546514960 0.172452571109329 0.173108824554090 0.171781213465250 0.17446476033821 0.170458019791883 0.180245831633319 0.179933156727632 0.173686859733271 0.172048454445367 2 2|0 +|/ 14456818 14457423 14457142.5 14453017 14457601 + gene protein_coding_gene FALSE TRUE AT2G34210.1 KOW domain-containing transcription factor family protein Identical to Putative transcription elongation factor SPT5 homolog 2 [Arabidopsis Thaliana] (GB:O80770); similar to KOW domain-containing transcription factor family protein [Arabidopsis thaliana] (TAIR:AT4G08350.1); similar to putative KOW domain-containing transcription factor [Oryza sativa (japonica cultivar-group)] (GB:BAD16863.1); similar to Os02g0772000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048262.1); contains InterPro domain Ribosomal protein L24/L26; (InterPro:IPR005825); contains InterPro domain NGN; (InterPro:IPR006645); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Supt5 repeat; (InterPro:IPR005100); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain Bacterial NusG ribosomal protein; (InterPro:IPR003257); contains InterPro domain KOW; (InterPro:IPR005824) 0.104124124847672 1.12165750159969 0.286150849213780 1 -0.00969272076779737 2.62058936129512 0.104124124847672 0.0747023990864289
AT1G57540_at 6.10884021556282 6.43425688937084 5.99830468348274 5.86754399443611 6.70648732984873 6.67109597867865 5.83311130062908 6.19978258346921 5.2694841808936 5.52912602211026 5.34988235550713 5.07594030493272 5.48379274058825 5.87695567136467 5.29311543251236 5.33659038636247 5.68716610536136 5.78304332069971 5.50649022675691 0.21190582939427 0.215504611165346 0.216491084679666 0.214448076740923 0.229138962893099 0.226606888338498 0.214126295648332 0.213593793842576 0.2275469744129 0.211784051166322 0.213230243447253 0.211784051166322 0.219063784457954 0.217569789227757 0.214181704814861 0.213426183398696 0.220237551747311 0.22105713585575 0.21738955957997 1 1|0 -|/ 21314155 21314804 21314382.2 21313994 21315167 - gene protein_coding_gene FALSE TRUE AT1G57540.1|AT1G57540.2|AT1G57540.3 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81218.1); similar to Os01g0250600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042596.1) 0.108818781216365 1.12153934958899 0.286198951212125 1 -0.0098120298616755 11.6878500050613 0.108818781216365 0.0880191383674954
AT2G01110_at 10.0564405283851 9.91739733438766 9.8577021630669 9.87805066125952 10.5431328292471 9.87013307534315 10.8970281376064 10.4206765340517 10.1623412003713 10.2836602548187 10.1871268752695 10.1625794123963 10.4087118624973 10.1452737507767 10.0076906606298 10.3172924782543 10.1752291608783 10.2843274192031 10.1339716864857 0.115029927195072 0.109411210342266 0.114195854239752 0.118662316040983 0.113720362754643 0.120619724984669 0.118709446650973 0.113306745443139 0.118141120305613 0.109930639924668 0.109411210342266 0.109411210342266 0.110707987067279 0.125272187486921 0.118720934097218 0.112922634998566 0.128826861505144 0.120367272413798 0.110126993163534 2 2|0 -|/ 83791 84514 84197.1 83260 85229 - gene protein_coding_gene FALSE TRUE AT2G01110.1 APG2 (ALBINO AND PALE GREEN 2) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC) similar to TatC [Pisum sativum] (GB:AAK93948.1); contains InterPro domain Sec-independent periplasmic protein translocase; (InterPro:IPR002033) -0.133963189724475 -1.12151476902621 0.286208959224812 1 -0.00983684992037004 20.3822468244418 -0.133963189724475 0.144745158477289
AT2G22125_at 8.74170564954652 8.76675404680278 7.9185825033774 8.167401182755 8.45563908553358 8.61207043036581 8.7333402378069 8.83423077447326 9.60760590712196 9.28540116566207 10.1083494093322 9.90036229399036 9.77989592219278 9.82254848590879 9.85400470207634 9.51164177034105 8.98691124997028 9.60789775376611 9.3425039468041 0.119142054738325 0.120844865504190 0.126145924811535 0.128245590778046 0.121312623293766 0.126439364696226 0.116590930311407 0.124634447895105 0.121702705164043 0.12045457828382 0.120342686687939 0.116740349551373 0.116590930311407 0.118585650755987 0.121633911834414 0.117066332186054 0.133240502847249 0.117625218238945 0.118451680441082 2 2|0 +|/ 9420801 9421254 9420990.9 9413343 9421598 + gene protein_coding_gene FALSE TRUE AT2G22125.1 binding similar to C2 domain-containing protein / armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G77460.1); similar to C2 domain-containing protein / armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G44120.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38184.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91813.2); similar to C2 [Medicago truncatula] (GB:ABE94518.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Sialidase; (InterPro:IPR011040); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0979849673657758 -1.12130855279936 0.286292931104196 1 -0.0100450587447267 18.0828597163210 -0.0979849673657758 0.0539497250930011
AT3G52810_at 2.05129789287238 1.86572122350940 2.38936494883922 2.08525063027131 1.98824712448957 1.75647870673211 1.76765035622307 1.95746351027840 1.85010913580490 1.90723705177692 1.82639334954659 1.40043438793653 1.73815567446514 1.94965538376585 1.88939649452357 1.63302554035583 1.99444118835512 2.0791009886281 1.48052808267581 0.220294210614103 0.218364189011359 0.222358202039399 0.219860072120463 0.219828992909900 0.216514321359658 0.2149150759629 0.218531698198485 0.218284880858076 0.219094103185191 0.2149150759629 0.2149150759629 0.218180829043277 0.217098182823171 0.2149150759629 0.2149150759629 0.226611052376391 0.226967326271284 0.220861320858024 3 3|0 -|/ 19582099 19583054 19582615.2 19581939 19584711 - gene protein_coding_gene FALSE TRUE AT3G52810.1 ATPAP21/PAP21 (purple acid phosphatase 21); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP22/PAP22 (purple acid phosphatase 22), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52820.1); similar to Ser/Thr protein phosphatase family protein, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX94837.1); similar to Os11g0151700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065769.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.106084696361728 1.12125988042997 0.286312753414646 1 -0.0100941970836053 3.76257603216841 0.106084696361728 0.0805531543059857
AT1G79180_at 1.65207044841904 1.71325586015568 1.36980295445679 2.13226659022337 1.74847890960072 1.93962480424404 1.69463743538967 1.78886592620215 1.79437267385933 2.30467799594672 1.59103724164565 1.76768342386215 2.01515816732122 1.72980556696267 2.12684421864521 1.89052742719952 2.52218966463213 2.41755554968880 1.39796629670579 0.198073817778232 0.194559421461875 0.199187881323023 0.203293297151307 0.212700360177788 0.195657851584868 0.205950432383717 0.205111678530366 0.213406683762209 0.201513067903576 0.194559421461875 0.197049592035740 0.199368951458077 0.203986704895029 0.200067831582225 0.196564424594346 0.196027145952483 0.198758727419681 0.207854251265548 1 1 + 29791920 29792455 29792131 29791388 29792695 + gene protein_coding_gene FALSE TRUE AT1G79180.1 AtMYB63 (myb domain protein 63); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB58 (myb domain protein 58), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G16490.1); similar to Myb-related protein Zm1 (GB:P20024); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.130298532873491 1.12112151910169 0.286369108236464 1 -0.0102338739834513 3.67484493925241 0.130298532873491 0.137413490190468
AT1G27650_at 6.86829402249599 6.7028006926212 6.20367082194726 6.58470994633756 7.0709693781647 6.51300551479898 6.44845705139252 6.55333896456387 6.77950488765207 6.32802515080601 6.6255250712201 5.9466183798872 6.55972933905092 6.66108036219039 6.54292709433029 6.6754702499891 6.15908722986159 5.98510480581325 6.66264352781364 0.182563007550052 0.170805889183044 0.179855451463743 0.172305944750498 0.173357932481477 0.181113187867924 0.174018343528898 0.173776182777085 0.174851779001812 0.179344865613652 0.174600669717416 0.176931693334505 0.170805889183044 0.181274581663114 0.171276836937134 0.179586923065019 0.184812573703277 0.17450291506715 0.182545936279454 1 1 + 9615442 9615821 9615635.727 9614538 9616344 + gene protein_coding_gene FALSE TRUE AT1G27650.1|AT1G27650.2 ATU2AF35A; RNA binding|ATU2AF35A U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to RNA-binding re (GB:ABE79661.1); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to hypothetical protein LOC664621 [Mus musculus] (GB:NP_001034752.1); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.122874403168661 -1.12100575838414 0.286416264363049 1 -0.0103507250996500 13.1104061350236 -0.122874403168661 0.121742786923127
AT2G21655_at 1.58385173243649 2.02721968570841 1.47496934033032 1.85673742765013 1.12594509906971 1.67166223425528 1.43940694609984 1.59776564808396 1.77033973960832 2.01889309914791 1.74490849836746 1.66430883715413 2.11377436896263 2.16390731498554 1.78088605736377 1.76498802963249 1.74782851945244 1.62380520789061 2.09080555780432 0.236895627238161 0.229657995947133 0.235524792265334 0.218907788548958 0.233576137261933 0.232273512990069 0.232435469006507 0.229230042157059 0.232038674781055 0.220019157042581 0.220969259029827 0.221409503782487 0.226536764421345 0.220037942124923 0.228119038307116 0.223344158716849 0.218949038261345 0.231813952497048 0.233430106841128 2 2 + 9270688 9271107 9270882.556 9270617 9271178 + gene protein_coding_gene FALSE TRUE AT2G21655.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29797.1); contains InterPro domain Protein of unknown function DUF784, Arabidopsis thaliana; (InterPro:IPR008502) -0.1320972111916 -1.12085987952876 0.286475697903774 1 -0.0104979647086132 3.48997659074409 -0.1320972111916 0.141143736513236
AT1G32780_at 0.628259572890512 0.372591199263539 0.675088584579052 0.435760582050041 0.936839620782417 0.564077393484378 1.28975394928385 0.855551652757524 1.22904909923915 0.892356847110031 1.17720519155608 1.75957831574084 0.752937255705482 1.00085207555161 1.36256728766877 1.05948661663637 0.226706936610333 0.868790005118405 1.27758572481292 0.204349373020585 0.206704747819700 0.214653165847554 0.214714979850935 0.205241199770719 0.203343980774954 0.203343980774954 0.206299225529481 0.210706137515275 0.21941495850316 0.208065726814000 0.212883118731531 0.203876860084558 0.222437836208594 0.218196590729105 0.211001384372128 0.211060058911754 0.226058015715998 0.210307525589811 1 1|0 -|/ 11869978 11871257 11870323.556 11869805 11872906 - gene protein_coding_gene FALSE TRUE AT1G32780.1 alcohol dehydrogenase, putative similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G64710.1); similar to Os10g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064203.1); similar to alcohol dehydrogenase [Solanum tuberosum] (GB:CAA37333.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.120289655736049 -1.12065466741075 0.286559320935158 1 -0.0107050658541638 1.79924666153351 -0.120289655736049 0.116105045249980
AT4G33170_at 0.937690071148372 1.30435733908702 1.21561796285560 1.46488769181673 1.01602250232093 1.11150006488599 0.712682039598602 1.34588952683593 0.855721831736528 0.673765452033931 0.662219085016617 0.912492195848545 0.79789198895106 1.21380031039968 1.48500599672260 0.941866912632718 1.12522573508044 0.974564456754706 1.11966210744933 0.20169838636421 0.200192801611815 0.200139185894255 0.205533206413907 0.201561383111372 0.197496723606101 0.20321133030151 0.202185596133932 0.213528533116182 0.205396864933908 0.209665550545780 0.200493826914046 0.206639783495893 0.199992328693477 0.198761898603536 0.200414286545629 0.204584090878961 0.202124696720837 0.200510263347847 4 4 - 15995743 15996277 15996036.818 15995704 15998676 - gene protein_coding_gene FALSE TRUE AT4G33170.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G09950.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81759.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.128967924702431 1.12062346394596 0.286572037858221 1 -0.0107365539755483 2.08717246594318 0.128967924702431 0.134788140619211
AT2G18480_at 1.77110012056715 2.14606736425827 2.31027834401225 2.02865610265326 2.04463133130179 1.97174983454643 2.28308142480765 2.31780871464714 2.66377892939011 2.2267049009593 2.3508529539789 2.39832423667673 1.85963567518403 2.3266060971267 2.17132094218405 1.90817665412213 2.45066904883395 2.54996455429337 2.38323438763663 0.211001823095902 0.219068489564994 0.208908140528312 0.208601261106794 0.208601261106794 0.217652493785340 0.211057988876901 0.210388561893846 0.209579779744401 0.212388514970530 0.212108672734611 0.208601261106794 0.212707498552979 0.213353187216424 0.208601261106794 0.208601261106794 0.213438494016638 0.213665253343478 0.211820815268213 2 2 - 8016802 8017215 8017034.727 8016664 8018325 - gene protein_coding_gene FALSE TRUE AT2G18480.1 mannitol transporter, putative Identical to Probable polyol transporter 3 (PLT3) [Arabidopsis Thaliana] (GB:Q9ZNS0); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT4G36670.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE78857.1); similar to putative polyol transporter 1 [Lotus japonicus] (GB:CAJ29288.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.106657235985158 -1.12060619726222 0.286579075055149 1 -0.0107539778836748 4.44742990941357 -0.106657235985158 0.0823473335847367
AT3G23630_at 1.76764197818202 1.59665877150269 1.52361896976273 1.6488668844411 1.56755296685910 1.25338488234732 1.70082752669679 1.44954478224763 1.63922855562118 1.41225287527417 0.800538732977736 1.4433273977914 1.2847443752139 1.21958761888795 1.47632549448247 1.61639712338758 1.71245698624756 1.92390409734588 1.49379072470104 0.194300865629287 0.191656649699521 0.192627530746816 0.191656649699521 0.194052998817662 0.191656649699521 0.191672150983600 0.195538258987194 0.193002643362934 0.196251319969472 0.194393397112531 0.191656649699521 0.196499295689003 0.194606706470861 0.202451597112487 0.201584661560814 0.212004400691688 0.20147385028893 0.191656649699521 3 3 + 8489278 8489806 8489486 8488702 8490217 + gene protein_coding_gene FALSE TRUE AT3G23630.1 ATIPT7 (Arabidopsis thaliana isopentenyltransferase 7); transferase, transferring alkyl or aryl (other than methyl) groups Encodes an isopentenyl transferase involved in cytokinin biosynthesis. similar to ATIPT5 (Arabidopsis thaliana isopentenyltransferase 5), transferase, transferring alkyl or aryl (other than methyl) groups [Arabidopsis thaliana] (TAIR:AT5G19040.1); similar to isopentenyltransferase [Brassica rapa subsp. pekinensis] (GB:BAE43829.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) -0.105371414522518 -1.12056565520088 0.286595598871781 1 -0.0107948882874712 3.03838756866689 -0.105371414522518 0.078690773875091
AT4G15300_at 1.48327606002097 1.49175594364701 1.91777046346704 1.95283759120623 1.73218201461119 1.79752402116248 1.54835721438013 1.67160144942558 1.96053553472458 2.11602978835151 2.12623104991293 1.68877053088621 1.49634749919970 2.03695320795862 1.77865364870873 1.67476962467096 2.10993656900993 2.05737512555469 1.88669920152839 0.199635685225659 0.208726787320695 0.199403958229101 0.215774077826317 0.203665187600874 0.203822391990777 0.209917097727721 0.209189173322429 0.22013702786438 0.206042971075465 0.210182557459167 0.207759402236163 0.201457027909827 0.199431637919818 0.201379701249825 0.201283723130432 0.215625883832374 0.209227430929974 0.199403958229101 4 4 - 8730753 8731541 8731126.818 8730723 8732748 - gene protein_coding_gene FALSE TRUE AT4G15300.1 CYP702A2 (cytochrome P450, family 702, subfamily A, polypeptide 2); oxygen binding a member of the cytochrome P450 gene family. molecular function unknown. similar to CYP702A5 (cytochrome P450, family 702, subfamily A, polypeptide 5), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT4G15393.2); similar to CYP702A1 (CYTOCHROME P450, FAMILY 702, SUBFAMILY A, POLYPEPTIDE 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G65670.1); similar to CYP702A6 (cytochrome P450, family 702, subfamily A, polypeptide 6), heme binding / iron ion binding / monooxygenase [Arabidopsis thaliana] (TAIR:AT4G15396.1); similar to putative cytochrome P450-like protein [Sorghum bicolor] (GB:AAL73972.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0923528355981024 1.12038361915744 0.286669800758034 1 -0.0109785640422928 3.62885534400135 0.0923528355981024 0.0249344875170926
AT3G54680_at 3.36414318030132 4.01206006900636 4.17882199508495 4.42590937827817 5.06642528062824 4.23815776079716 4.55988920248546 4.76631532542374 3.19277151735369 2.76305066571732 2.58901460290844 2.50460574746604 3.06196743288788 2.92462706953102 2.16229598297922 3.1602686075215 3.81028089442324 3.78394360113415 3.00047224140396 0.259821412834272 0.252188568043329 0.264037401435400 0.257271482184170 0.261452995137746 0.286997141760492 0.252188568043329 0.257561287991399 0.254940781475589 0.256752691745486 0.255583128244839 0.260924665891311 0.252188568043329 0.254859419114596 0.261996897246478 0.252302338472467 0.256323665610119 0.252188568043329 0.255749571713834 3 3 + 20255598 20256101 20255882.727 20255367 20257058 + gene protein_coding_gene FALSE TRUE AT3G54680.1 proteophosphoglycan-related 0.157960338462176 1.12027229861616 0.286715184754532 1 -0.0110908758979915 7.31899375759139 0.157960338462176 0.190319796177674
AT4G39680_at 8.21291657955054 7.91481632773243 8.2469544581633 7.94023666864607 8.51317497712412 7.98877482576165 8.45740015723835 8.17671894810893 8.37284880299215 8.41906322947538 8.20231009904393 8.1006717059245 8.31867265879956 8.24834005427024 8.15137409663495 8.40712463261026 8.16609870126273 8.25732880233132 8.59841668341179 0.114688980868279 0.118261065637530 0.119877962926578 0.115325904061478 0.11231459391788 0.116241302167444 0.117945463515186 0.115769864577286 0.138135288626024 0.115095096492263 0.115826936161579 0.113000378298166 0.118371946359800 0.118654113746393 0.132011301180548 0.116561412249949 0.1289131401622 0.122283538935998 0.117727082389215 4 4|0 -|/ 18414641 18415243 18414908 18414300 18417524 - gene protein_coding_gene FALSE TRUE AT4G39680.1|AT4G39680.2 SAP domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to RNA-binding re (GB:ABE94513.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) -0.125065291083595 -1.11974371047865 0.286930759174809 1 -0.0116240528440781 16.5288406173671 -0.125065291083595 0.126781531233241
AT2G47400_at 12.8093407211521 12.7793956372359 12.7906646065217 12.7733817816174 12.9749205236906 12.8107158722514 12.8358143293628 13.0576138112575 13.0628429501015 13.0680624273965 13.3820232357215 13.3683519622181 13.3503324931257 13.2665867652883 13.2233672716706 13.2650041019566 13.1611373966617 13.2149556293171 13.0281131636489 0.0749684648714286 0.0774325352572149 0.0768405842966756 0.077976996906778 0.0770126501388077 0.078330219757708 0.0786471367460257 0.0758550731384769 0.0767365201287764 0.0747302165183044 0.074543314711954 0.0745275754563429 0.0743526827101168 0.0795549295094765 0.07593779498125 0.0743526827101168 0.0772398104089205 0.0744614349232699 0.0751932008541421 2 2 + 19453960 19454303 19454074.818 19453924 19454508 + gene protein_coding_gene FALSE TRUE AT2G47400.1 CP12-1 (CP12 domain-containing protein 1) CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494. similar to CP12-2 [Arabidopsis thaliana] (TAIR:AT3G62410.1); similar to CP12 [Nicotiana tabacum] (GB:CAA96569.1); contains InterPro domain Protein of unknown function CP12; (InterPro:IPR003823) 0.096421623940457 1.11954124462908 0.287013364042486 1 -0.0118282245782891 26.0199689290748 0.096421623940457 0.0481308489633104
AT1G41810_at 1.43391516266598 0.768170648126994 1.38979909973678 1.06558616147800 0.823442129847691 1.27226189209398 1.12070622035036 0.841220624541871 1.42866356963853 1.26084282896555 1.09887480362638 1.38866498931895 0.957995371778024 1.08921187613207 1.57464792634105 1.14403774821522 1.87023122037709 1.37261124454449 0.695941430951466 0.221316150022216 0.221440363181126 0.228021238972342 0.224511665038266 0.227144246838747 0.229322484577871 0.223497349931506 0.218741990876117 0.233322405890887 0.218520364945478 0.220488493141383 0.224331861598112 0.229757572602359 0.220001252610637 0.219370596673394 0.218110736903155 0.227548541410049 0.221255035894111 0.227963175948326 1 1 - 15582279 15582934 15582587.727 15582258 15582998 - gene protein_coding_gene FALSE TRUE AT1G41810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34590.1) 0.140160472278812 1.11930335684338 0.287110444277723 1 -0.0120680800480391 2.30964624605196 0.140160472278812 0.157458934792291
AT1G44960_at 3.65699749314206 4.36936307335148 4.03182142126465 4.14248383647953 3.83435221512433 4.57211848902490 3.74978517213753 4.34156786992287 2.53903772852126 2.60937047846965 2.68577745949912 2.97735358236451 2.992169412539 2.8331271094002 2.60256713747826 2.82051902835001 2.85276194724708 2.87603218905278 2.68999284967629 0.282132539635928 0.268914444343942 0.267495338361438 0.265971119484274 0.265033437613802 0.263836812996668 0.26395141222491 0.267274829387508 0.27440452800778 0.267735468362159 0.270525639264293 0.269030281550039 0.261501245267005 0.267319317505897 0.26772722048237 0.261501245267005 0.278420149901238 0.270961428308559 0.262732453369212 1 1|0 +|/ 17002263 17003843 17003480.667 17001978 17004169 + gene protein_coding_gene FALSE TRUE AT1G44960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03260.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94087.1); contains domain UNCHARACTERIZED (PTHR12677) 0.166501859676917 1.11911724694312 0.287186411992100 1 -0.0122557017411703 6.8087306140378 0.166501859676917 0.205798067697886
AT4G35250_at 10.6243035573274 10.5667362634989 10.7515895241778 10.5306884940520 10.5742596975441 10.6042724960304 11.5232349688501 11.5627179922751 11.5160040221338 11.3460035509922 11.7201809428651 11.7566802311049 11.6015210173445 11.7632854383016 11.6631502820729 11.9156277819639 11.4362302646257 11.7128990363294 11.4328875788081 0.0913703080845185 0.0883346446545477 0.0890891887617466 0.0903268585023145 0.086862225786289 0.0904358243758428 0.0860992362575829 0.0862321334296549 0.0923806398556348 0.0897628438319004 0.0873798245425785 0.0851825261980689 0.0851825261980689 0.0865515766110259 0.0891874644793375 0.0851825261980689 0.0914507505758419 0.0851825261980689 0.0879338300528156 4 4|0 -|/ 16771415 16772351 16771912.625 16771176 16773369 - gene protein_coding_gene FALSE TRUE AT4G35250.1 vestitone reductase-related similar to DVR (PALE-GREEN AND CHLOROPHYLL B REDUCED 2), 3,8-divinyl protochlorophyllide a 8-vinyl reductase [Arabidopsis thaliana] (TAIR:AT5G18660.1); similar to hypothetical protein MtrDRAFT_AC121239g27v1 [Medicago truncatula] (GB:ABE78447.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.0947402427610948 -1.11910190051813 0.287192676900766 1 -0.0122711717450984 22.4061396700382 -0.0947402427610948 0.0404263012530565
AT2G13370_at 7.77638118955017 7.68953495686055 8.07470442339996 8.01748106640983 8.0653739619785 7.88139168773612 7.45942195597993 7.5410479929529 7.66027475749641 7.52600072684903 7.4823569602322 7.53590471836467 7.34988119467222 7.36497102283501 7.00027295119281 7.70401226392482 7.86015535577714 7.011030143406 7.66712815343157 0.169939255997474 0.172368663548169 0.175289288777277 0.173169310554439 0.174778375514779 0.180590734824684 0.170562002696259 0.168871935014096 0.179029863456209 0.169433309426415 0.177616007547786 0.171829465031265 0.168546104938863 0.17635210275116 0.176638426988586 0.171116433855582 0.169906121718221 0.170672062436617 0.175489610742514 2 2 - 5551696 5552415 5551900 5551263 5563546 - gene protein_coding_gene FALSE TRUE AT2G13370.1 CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase similar to PKL/SSL2 (PICKLE, SUPPRESSOR OF SLR2) [Arabidopsis thaliana] (TAIR:AT2G25170.1); similar to SNF2-related; Chromo; DEAD/DEAH box helicase, N-terminal; DNA-directed RNA polymerase, subunit beta-prime [Medicago truncatula] (GB:ABE84348.1); similar to Helicase, C-terminal; Homeodomain-like [Medicago truncatula] (GB:ABE84346.1); similar to PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2 (ATP-dependent helicase CHD2) (CHD-2) isoform 3 [Mus musculus] (GB:XP_982327.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Chromo; (InterPro:IPR000953) 0.0944565623767462 1.11853954620061 0.287422320853054 1 -0.0128379407823633 15.3288542988050 0.0944565623767462 0.0392071249519263
AT1G80290_at 5.22326248733377 5.38554314422174 4.78718041587981 5.12441540723315 4.41816709699698 4.50292260644004 3.76143576740242 3.75707490371158 4.57023089164834 3.46557632541562 4.18659330290372 4.30603449741741 3.76617702282833 4.15648931256951 3.99518707118694 4.25781247258957 3.56038943310023 3.86564381256889 3.92150118395480 0.191922851704414 0.188212065640039 0.187309405713133 0.186179489179729 0.184037346747579 0.189592134742559 0.186561787198705 0.185913887476948 0.197095243457964 0.186131359788222 0.189847200535489 0.188337150278421 0.184351056949141 0.182035006625524 0.182046007104144 0.190341999325634 0.184606228018493 0.188186595393531 0.184694601664719 1 1 + 30193867 30194434 30194103.182 30193213 30194618 + gene protein_coding_gene FALSE TRUE AT1G80290.1|AT1G80290.2 glycosyltransferase family protein 47 a member of the Glycosyltransferase Family 64 (according to CAZy Database) similar to EPC1 (ECTOPICALLY PARTING CELLS), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G55830.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG12906.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448); contains domain EXOSTOSIN-RELATED (PTHR11062:SF3); contains domain EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED (PTHR11062) 0.101181852304719 1.11822929083137 0.287549077823740 1 -0.0131505370122984 8.61878039497835 0.101181852304719 0.0664099306199777
AT3G26270_at 2.48572521898317 1.65769655822025 1.98280050298138 2.16846566045773 2.13943143963837 1.93533128879540 1.84435628340660 2.1880966238144 2.19283245001221 2.27130361430752 1.83497351101552 1.9118391685423 1.96962268039428 1.77132458266998 1.95208928857940 2.07937658438148 2.13003188930999 1.97236610527402 2.28675905930474 0.216254157170491 0.222600462073546 0.217237635755785 0.220760863255905 0.217863080163142 0.219674966991073 0.215305841138405 0.219503040106559 0.226174035272219 0.220580196193891 0.219603315514395 0.216143640225090 0.218764661327845 0.215055956209658 0.215761460924618 0.216015957515429 0.215181931889424 0.213734910388689 0.218110542944653 3 3 - 9628953 9629392 9629174.091 9628799 9630437 - gene protein_coding_gene FALSE TRUE AT3G26270.1 CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B25 (EC 1.14.-.-) (CYP71B25) [Arabidopsis Thaliana] (GB:Q9LTL2); similar to CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26280.1); similar to CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26220.1); similar to CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26230.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.142528423204252 -1.11797442506930 0.287653237215297 1 -0.0134072752899974 4.15173862244334 -0.142528423204252 0.162332036831602
AT2G11010_at 1.55990483238460 1.30564972044800 1.43900406426617 1.37716251404658 1.02974190951173 1.74579443250234 1.37378609513333 1.48482631123848 1.67779506888479 1.52665118659936 1.58728369255363 1.40017416691076 1.18549200876303 1.27673299317481 1.33429113597844 1.05611218473675 1.70540145613458 1.96474143453472 1.78011024660706 0.211765341293745 0.206858111319818 0.204812796902626 0.206478009428198 0.206615483631746 0.207382569764687 0.205088512628506 0.203976945121481 0.205053519085878 0.212560616678471 0.203456724710890 0.206048365747097 0.210048538053455 0.203209297586982 0.204869070971084 0.209808576196852 0.210636883684592 0.207460167731081 0.21092314698499 2 2 + 4371287 4372973 4372610 4368951 4373001 + gene protein_coding_gene FALSE TRUE AT2G11010.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT5G32590.1); contains InterPro domain Hypothetical protein MTH865; (InterPro:IPR009108) -0.127928104825730 -1.11769798919167 0.287766244819823 1 -0.0136856907226963 2.96463246900578 -0.127928104825730 0.133323000469056
AT4G00280_at 1.90432707762836 2.48847660792992 2.38053626865781 2.46172839772365 1.75795871046497 2.06302180594296 2.08191910107327 2.38265858711078 1.83892868728573 2.06193142542288 2.25357267867954 2.32752131762005 2.06162900485707 2.29488403800441 2.05965577550209 1.97585965182144 2.48829146233157 2.40292694361441 1.90549095049619 0.217020555631993 0.213113263049611 0.214064750110285 0.218008834564603 0.214798813830760 0.213113263049611 0.214170664017434 0.223220608261435 0.227388335609157 0.223380879884944 0.213113263049611 0.214324092855121 0.220779782555952 0.220089988869122 0.229758723747676 0.221026499967907 0.216437928270076 0.224985036563622 0.220430941932270 4 4|0 -|/ 122430 122827 122591 122409 122851 - gene protein_coding_gene FALSE TRUE AT4G00280.1 similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19210.1) 0.124529103456993 1.11760253913152 0.287805272961599 1 -0.0137818118665159 4.27432480129418 0.124529103456993 0.126143741504532
AT2G35430_at 2.72275796808092 2.67575606109535 2.59375192031379 1.86156970815047 2.61517432815579 2.77660113053186 2.49707571129418 2.80844876739024 2.81751176051043 2.66533241280506 2.58250261431604 2.34432911718614 2.84489381201358 2.84550596074710 2.51869713453668 2.52091982070739 2.47818436342275 2.63959700955690 2.45380628995442 0.223416251902174 0.218373745564722 0.228572560646022 0.228705457448154 0.223010327782867 0.224310705914952 0.218373745564722 0.227006904203637 0.224943545554813 0.221314399089106 0.224094423699049 0.224173862796424 0.227502996619687 0.218373745564722 0.221596681388250 0.227639898901886 0.220636241424972 0.227452452227683 0.221298983761463 2 2 - 14908848 14909277 14909102.2 14907957 14909464 - gene protein_coding_gene FALSE TRUE AT2G35430.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G32360.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE79187.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.131478390269837 -1.11733517308997 0.287914616759313 1 -0.0140510237038663 5.19008139111864 -0.131478390269837 0.140729917177104
AT3G49600_at 4.85755402399281 3.98410636606194 4.63910379110198 4.26097046047231 4.85142432844315 4.50818319943337 4.96388289256434 5.14624347695532 4.17939145043505 4.99542639551014 4.04781056827967 4.80104626904392 4.85923239502834 4.26140233258393 4.35629675280541 4.7263918533069 4.59215927286896 4.59781482556681 4.80132979175685 0.195315052986668 0.194680522699658 0.197207114383739 0.199754772503385 0.197273062955908 0.206973308504536 0.193772940978025 0.195791102067764 0.204984954372830 0.199103877452423 0.194224399542304 0.203983105727370 0.194097552567461 0.199190814338020 0.203374244762538 0.193310406254135 0.207226428035432 0.192858954141039 0.199851325397260 3 3|0 -|/ 18391952 18392900 18392387.8 18391534 18398113 - gene protein_coding_gene FALSE TRUE AT3G49600.1 UBP26 (ubiquitin-specific protease 26); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G06600.2); similar to ubiquitin-specific protease, putative [Arabidopsis thaliana] (TAIR:AT3G11910.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal re (GB:ABE80390.1); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1; (InterPro:IPR006615); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.150736420289711 -1.11726031080705 0.287945238671682 1 -0.0141263938320632 9.2459261488379 -0.150736420289711 0.177915469204635
AT4G03430_at 5.91828159872087 5.89349115180102 6.23116929981857 6.11096779380102 6.47665274838335 6.21627766956903 5.77604612253973 5.88243559012155 6.17640157585344 5.58037257882667 5.6448792952953 5.76661624694216 5.52282749328579 5.20300225285917 5.56340933603871 5.7682027915148 5.26721955783427 5.69871826478855 5.49543266147209 0.240767092514487 0.25428448610372 0.248933746866954 0.24326144749139 0.245933083979045 0.253040301339074 0.236403397280093 0.237295386902533 0.273878920454546 0.242551374941698 0.240281227651481 0.234785651222993 0.236026602877662 0.248804649718242 0.236587596688727 0.235766180896679 0.252129381331922 0.24456267304884 0.241612888098241 4 4 - 1517460 1517982 1517769.636 1517132 1520561 - gene protein_coding_gene FALSE TRUE AT4G03430.1 STA1 (STABILIZED1); RNA splicing factor, transesterification mechanism Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. similar to BGAL14 (beta-galactosidase 14), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G38590.1); similar to MGC97740 protein [Xenopus tropicalis] (GB:NP_001025642.1); similar to Protein prenyltransferase; PRP1 splicing factor, N-terminal [Medicago truncatula] (GB:ABE92650.1); similar to putative pre-mRNA splicing factor [Oryza sativa (japonica cultivar-group)] (GB:AAL58273.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain PRP1 splicing factor, N-terminal; (InterPro:IPR010491); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.097413530766487 1.11719672006836 0.287971252005565 1 -0.0141904128680475 11.7157127519463 0.097413530766487 0.0531074478615657
AT1G17120_at 5.72522547707549 6.68838491548202 5.97293580131973 6.0342772847268 6.74916660959418 6.39224103343616 6.17187504710234 6.37753213583972 7.13377180376755 6.11613461442644 6.96384692551046 7.04039934022332 7.0965783326076 7.0661872906714 6.75727684118294 6.93466731494123 6.31668236968637 6.8625644820025 6.61254984803606 0.206962339027021 0.189672554558922 0.210055530142814 0.203046668359328 0.196216401236925 0.208922627812064 0.200515095127967 0.194459329176073 0.210077523174458 0.198779007419306 0.201219193678205 0.193456301390132 0.191013382807332 0.208047423212947 0.200740678010548 0.197938165326337 0.217731751979846 0.196133544212802 0.194313614436045 1 1 + 5853132 5853645 5853384.182 5851946 5853948 + gene protein_coding_gene FALSE TRUE AT1G17120.1 CAT8 (CATIONIC AMINO ACID TRANSPORTER 8); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g17120) similar to CAT5 (CATIONIC AMINO ACID TRANSPORTER 5), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT2G34960.1); similar to Os01g0209800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042365.1); similar to Os06g0539400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057802.1); similar to Amino acid permease family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99390.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.152678697543771 1.11683870481927 0.288117740614083 1 -0.0145507865331393 13.0142518468287 0.152678697543771 0.181594430239368
AT1G20120_at 1.48999989064455 1.97473639080978 2.83943457862021 2.38047594469104 1.99289348950115 2.41931852509204 3.48009394514724 3.38792486381635 2.07652541584169 1.9070263221625 1.56613583858857 1.63322285629115 2.05397615269343 2.1653899467925 1.71482899308141 1.83004456464404 2.42885123984576 1.3932863425023 1.81608201451309 0.244379705173569 0.242705400856025 0.247572943818621 0.242705400856025 0.254026613757471 0.252838269902746 0.253954224927145 0.249366846826807 0.251237608094514 0.258708266801170 0.244472399125261 0.243420831862167 0.245668568134096 0.243435842546001 0.248107989306030 0.242705400856025 0.247725951032410 0.248966687007214 0.242705400856025 1 1 + 6976354 6977084 6976678.727 6975379 6977255 + gene protein_coding_gene FALSE TRUE AT1G20120.1 family II extracellular lipase, putative similar to family II extracellular lipase, putative [Arabidopsis thaliana] (TAIR:AT1G20130.1); similar to anther-specific proline-rich protein [Brassica oleracea] (GB:AAL67433.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) -0.130076198581287 -1.11673746500989 0.288159175176624 1 -0.0146526769622456 4.38632382486229 -0.130076198581287 0.138004552093176
AT4G30430_at 0.56826920951821 0.955798981236036 1.17943415118850 0.942735262451026 0.939009937737583 1.04789809579326 0.708896682326926 0.763440573135087 0.948853341524348 0.707269950580909 0.721135566588919 0.927558360369442 0.49910338272324 0.87942674184699 0.766532582607445 0.867356933634951 0.491873017160151 0.649970795167592 0.719079648044308 0.225486551030946 0.229151951119088 0.226402181470067 0.231448427024231 0.224528141745011 0.235860518640254 0.225192083541826 0.228942976802702 0.236446847024217 0.223972664236354 0.236847694042983 0.227021782110237 0.228355401162673 0.233378013215638 0.225782736848883 0.22443946832286 0.229867996846678 0.225777087391049 0.227197020163115 4 4|0 -|/ 14879045 14879982 14879472.1 14878789 14880337 - gene protein_coding_gene FALSE TRUE AT4G30430.1 TET9 (TETRASPANIN9) Member of TETRASPANIN family similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein DH [Zea mays] (GB:AAV31120.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.105901679683839 1.11633133577140 0.288325438408851 1 -0.0150613439688980 1.64673735462109 0.105901679683839 0.081360975193028
ATCG00070_at 11.2696616605626 11.8083372559176 11.4169500220952 11.3202390328573 11.6247771852757 11.1110464605093 11.6354912484692 11.7868878307990 12.1829735405824 11.8100606682258 12.768257083066 12.7961803294036 12.6142846438584 12.5977727176189 12.2424663669552 12.6199236882083 12.0237731791439 12.5324242528664 12.0454208823277 0.105841745229132 0.0961661889372424 0.118394680713688 0.105976306501583 0.0989898615000065 0.113216786442865 0.0995912423290897 0.0998876754405234 0.102617033665939 0.102127329306971 0.0983989170272978 0.101630581420931 0.100271313096337 0.0999512743245766 0.101249606866275 0.100232146521017 0.112899172947364 0.0976408510358884 0.0969832385489232 C C + 7035 7177 7106.364 7017 7202 + gene protein_coding_gene FALSE TRUE ATCG00070.1 PSII K protein Identical to Photosystem II reaction center protein K precursor (PSII-K) (psbK) [Arabidopsis Thaliana] (GB:P56782); similar to Photosystem II reaction center protein K precursor (PSII-K) (GB:P10347); contains InterPro domain Virus capsid protein, alpha-helical; (InterPro:IPR008935); contains InterPro domain Photosystem II protein PsbK; (InterPro:IPR003687) 0.127362797587697 1.11612499266281 0.288409940487042 1 -0.0152689321407419 23.7652756602367 0.127362797587697 0.132515652029318
AT2G17900_at 1.68971703857334 2.25105593413217 2.03036766122394 2.4719842190277 2.26158542952043 2.12976956801174 2.3523234027041 2.52582820862134 2.4687139062214 2.55847302633349 2.7825159096843 2.70489998996273 2.73363750340607 2.74209465165812 2.92304040934857 2.8978644644681 2.49486853279806 2.48194701375061 2.43453390370667 0.191237757634764 0.1936817600831 0.191237757634764 0.203878824648602 0.196139616418695 0.192996321484627 0.192059532563955 0.197306714971755 0.199255868767743 0.192790254213177 0.198247277584008 0.193637743784042 0.199115394182622 0.197101322432512 0.196944298762478 0.199982559228228 0.205622174506723 0.203752354476279 0.193166476898992 2 2|0 -|/ 7780595 7782100 7781501.25 7780410 7783765 - gene protein_coding_gene FALSE TRUE AT2G17900.1 SDG37 (SET DOMAIN GROUP 37); zinc ion binding Homology Subgroup S-ET - Protein containing an interrupted SET domain. Identical to Histone-lysine N-methyltransferase ASHR1 (EC 2.1.1.43) (ASH1-related protein 1) (Protein SET DOMAIN GROUP 37) (ASHR1) [Arabidopsis Thaliana] (GB:Q7XJS0); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G21820.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33400.1); similar to putative MYND finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07242.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893) 0.125781927034465 1.11592120153668 0.288493416188547 1 -0.0154739236236437 4.81775335179606 0.125781927034465 0.129225130650366
AT1G50560_at 0.988118414058081 0.7315988847538 1.10456754088313 0.910964818809926 0.889766114404422 1.20526474671267 0.823850258432148 0.732944526507885 1.25594720576123 0.690649093517669 0.863032515082349 0.545531197931358 0.90139049605152 1.01030026794870 1.14661756957359 0.623346837247063 1.16897330609850 0.926607350799793 0.742405242731037 0.199742091417971 0.197807206062387 0.200269352324546 0.193912234174234 0.19690921771806 0.198948138896910 0.207720748379264 0.195765323296526 0.214825182305254 0.207179355798904 0.200687535928192 0.195739846354533 0.20043803831208 0.193912234174234 0.193912234174234 0.204451919466738 0.198932309520086 0.205875884056372 0.193912234174234 1 1 + 18729103 18729560 18729325.545 18727875 18729940 + gene protein_coding_gene FALSE TRUE AT1G50560.1 CYP705A25 (cytochrome P450, family 705, subfamily A, polypeptide 25); oxygen binding member of CYP705A similar to CYP705A27 (cytochrome P450, family 705, subfamily A, polypeptide 27), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G50520.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.105201939759760 1.11576637526194 0.28855684763507 1 -0.0156296423739484 1.82066380803439 0.105201939759760 0.0795086883179485
AT1G11250_at 2.26081402243827 2.24145640056239 2.52420669878223 2.69239948801704 1.94341133918036 2.14854163566511 2.53983823135685 2.57939242992943 2.25016377216987 2.76966238662667 2.45288289706760 2.50576096256856 2.62127232769379 2.13653387167106 2.29940314391783 2.25785221652999 2.52107305921231 2.14621410717532 2.42263914547622 0.196112951173806 0.191228655596943 0.194971156638576 0.197945088237074 0.189330403942061 0.193535238814788 0.189330403942061 0.202041636343388 0.190489036803583 0.193884895178780 0.192800094510521 0.193712694412999 0.191222610440243 0.196005309597932 0.194403730569573 0.190374939926662 0.209745748197714 0.195100765552001 0.195195738815714 1 1 + 3769032 3769673 3769333.455 3768724 3769706 + gene protein_coding_gene FALSE TRUE AT1G11250.1 SYP125 (syntaxin 125); t-SNARE member of SYP12 Gene Family Identical to Syntaxin-125 (AtSYP125) (SYP125) [Arabidopsis Thaliana] (GB:Q9SXB0;GB:Q4PT35); similar to SYP124 (syntaxin 124), t-SNARE [Arabidopsis thaliana] (TAIR:AT1G61290.1); similar to putative syntaxin-related protein Nt-syr1 [Oryza sativa (japonica cultivar-group)] (GB:BAD25019.1); similar to Os06g0590500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057967.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) -0.0957165877609567 -1.11554110478040 0.288649158850515 1 -0.0158561813654849 4.7904804514017 -0.0957165877609567 0.0465341722530187
AT1G09210_at 10.9772088406273 11.0790058917386 11.1366740356153 11.1894480050124 10.0586987084037 10.2147304862863 9.82362825715297 9.96837573338675 9.61300426842863 9.5042767111957 9.65306933630002 9.78345743419544 9.46089949367974 9.51614173956454 9.87391826390638 9.33915159903682 9.03644118274594 9.191844179898 9.32350541669632 0.0838345324502698 0.083882261479831 0.0863618943902488 0.0891347594176251 0.0857129767427621 0.0874767995940492 0.0838994208671907 0.0852631365079059 0.0896486312391571 0.0888307704543451 0.0841997802087398 0.0836680666447428 0.0853368326945216 0.0907342908425787 0.0856540987724615 0.0845976607053315 0.0973829080457437 0.0882871981636739 0.089240386910529 1 1|0 -|/ 2973333 2974942 2974181.5 2972844 2976752 - gene protein_coding_gene FALSE TRUE AT1G09210.1 calreticulin 2 (CRT2) Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to calreticulin-1 [Glycine max] (GB:BAF36056.1); similar to calreticulin (GB:AAA80652.1); similar to Calreticulin-2 precursor (GB:Q38858); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580) 0.0947181998309927 1.11552678768943 0.288655026468553 1 -0.0158705778735393 20.0370350126643 0.0947181998309927 0.0418368298992239
AT2G43090_at 9.4106250357413 9.5236959036466 9.33055160115198 9.38553006925176 9.54076003627964 9.14610030855741 9.34713202949004 9.67606229995132 9.46278569591063 9.00294716575063 9.57463012168334 9.6057291451346 9.4655854130205 9.56059084509218 9.95734465595647 9.49706659468705 8.92957871711799 9.32660034713403 8.92991695590869 0.110360229307862 0.105868303119453 0.110453664622580 0.112227569544811 0.106445511601785 0.109433797838107 0.105778286833978 0.103585106614828 0.114790121720817 0.107903073371304 0.107462618970545 0.103585106614828 0.103585106614828 0.108975456232093 0.113670672743248 0.103947167049385 0.119513043286985 0.103585106614828 0.103585106614828 2 2 + 17926213 17926548 17926340.273 17926004 17927506 + gene protein_coding_gene FALSE TRUE AT2G43090.1 aconitase C-terminal domain-containing protein similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58990.1); similar to putative protein [Oryza sativa] (GB:CAC39061.1); similar to Os02g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047617.1); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573) 0.109557072028917 1.11549300942164 0.288668870285255 1 -0.0159045429399246 18.7308191617595 0.109557072028917 0.0915325161557772
AT1G19000_at 10.8555763510892 11.0295211834347 10.9753226845695 11.0630087302190 11.2603663084177 11.2672092242521 11.5990121143434 11.6608340228402 11.1957108248367 11.3720968128435 11.4033030243739 11.1216684085715 11.3722628573222 11.2093727144910 11.1472853591997 11.2322993309873 11.3331144455232 11.2513997591467 11.3354570562559 0.0764111765286707 0.071178658346979 0.0742670332756614 0.072771281014949 0.0717237482006486 0.0736655503814072 0.0705881738361469 0.075399762741148 0.0751160911698278 0.0737720830855206 0.0715340913665715 0.0732142218519676 0.0716545005629495 0.0734704656464651 0.0768607452596963 0.072994351753954 0.0733569258582962 0.0754321895073776 0.0763848794027018 1 1 - 6561359 6562003 6561547.909 6560783 6562777 - gene protein_coding_gene FALSE TRUE AT1G19000.1|AT1G19000.2 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G74840.1); similar to Putative DNA binding protein, identical [Lycopersicon esculentum] (GB:AAX95766.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0935045874611875 -1.11548927058494 0.288670402656055 1 -0.015908302403714 22.4938195617777 -0.0935045874611875 0.0353872123884212
AT2G30430_at 0.448949756310367 0.713210113651929 0.402229196516142 0.592342580669673 0.320515613069281 0.652935302508935 0.548769523094519 0.782791001827718 1.07621745877149 0.689034988323688 0.935158681750407 0.534587797239734 0.487841616952042 0.744267264752036 1.01356953132471 0.745276224440382 0.80317587980549 0.957763961035361 0.827714023872134 0.203442306969544 0.197176490248497 0.197176490248497 0.198227701933048 0.199230944796423 0.200058290192873 0.197176490248497 0.199788586005561 0.203886161316349 0.209991503363915 0.207508938490645 0.197176490248497 0.199380954320475 0.199201679596077 0.201128908175515 0.200260406589070 0.209582620157569 0.2032595729439 0.206101316313889 2 2 + 12975255 12975457 12975349.636 12975253 12975489 + gene protein_coding_gene FALSE TRUE AT2G30430.1 unknown protein -0.109020731428355 -1.11546458074323 0.288680522001543 1 -0.0159331282125736 1.37873152428188 -0.109020731428355 0.0901290117565367
AT1G69740_at 9.67741386475508 9.82364013074862 9.73420687564067 9.69709073850728 9.86159338028752 9.74865795289158 9.94631115665113 9.87518357558576 10.0114808890797 9.74593157318052 10.1498917170235 10.2520485128702 9.78745864063765 9.88626029402901 10.4129557820394 10.1073974589562 9.75330525292655 10.0789281912466 9.63202451108398 0.0929642054482327 0.0908043085835436 0.0936161241265342 0.0894929209785871 0.0899361494332713 0.0916866581704353 0.0901275264513647 0.0913138347945942 0.0979495791339446 0.0914232149119648 0.089554707268748 0.0892706367871821 0.090670990901795 0.0907049322538551 0.0911994900376167 0.0898215276870547 0.091970745974782 0.0887743390127517 0.0916326329288057 1 1|0 +|/ 26237533 26238341 26237875 26235467 26238626 + gene protein_coding_gene FALSE TRUE AT1G69740.1|AT1G69740.2 HEMB1; porphobilinogen synthase|HEMB1 Identical to Delta-aminolevulinic acid dehydratase, chloroplast precursor (EC 4.2.1.24) (Porphobilinogen synthase) (ALADH) [Arabidopsis Thaliana] (GB:Q9SFH9); similar to HEMB2, porphobilinogen synthase [Arabidopsis thaliana] (TAIR:AT1G44318.1); similar to Delta-aminolevulinic acid dehydratase, chloroplast precursor (Porphobilinogen synthase) (ALADH) (GB:P43210); similar to aminolevulinate dehydratase (GB:2114378A); similar to aminolevulinate dehydratase [Raphanus sativus] (GB:AAK15323.1); contains InterPro domain Delta-aminolevulinic acid dehydratase; (InterPro:IPR001731) 0.0934008974990108 1.11533727056455 0.288732705515554 1 -0.0160611327008072 19.7205170705489 0.0934008974990108 0.0348580689409248
AT2G39340_at 8.2860796097405 8.3588325015597 8.49709001902255 8.33685643892298 9.02219440913681 8.26441799165549 8.5777272835656 7.9023628670063 7.57954570326277 8.27856636514275 7.97857419787568 8.19973465072438 8.57072536220556 8.03944029762677 7.66749810964177 8.79493009464337 8.16429671280223 7.74005695855047 8.41780262504885 0.168223427716352 0.166056683790672 0.168780940169184 0.174216497085401 0.173746048040483 0.178297282999393 0.168839584205317 0.175261302130597 0.173765792624935 0.17823298258013 0.172043894862399 0.170349944387984 0.166056683790672 0.171535095414743 0.173959665462709 0.166056683790672 0.177526193380802 0.175821295545017 0.171639139031692 2 2|0 +|/ 16435822 16436781 16436236.2 16430719 16437186 + gene protein_coding_gene FALSE TRUE AT2G39340.1 SAC3/GANP family protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to putative GANP protein [Oryza sativa (japonica cultivar-group)] (GB:AAT39189.1); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) 0.150662316370209 1.11524678426915 0.288769799602782 1 -0.0161521055658888 16.5238844463230 0.150662316370209 0.17828074142716
AT1G49320_at 2.75502657799063 2.94798755811072 2.977440236034 2.42993605884073 1.94104743166134 2.51584367588471 2.44596369712389 2.56065472889765 2.39675461607782 2.48368184682406 3.03383322994317 2.40791840014676 3.24344599663369 2.88053506891868 2.82221245614756 2.65448187471350 3.47241355277652 3.22454305777658 2.59459092135952 0.265140411624411 0.263009315680131 0.265427848913599 0.265121399947295 0.25933182386389 0.258308857782888 0.268726656322272 0.267465200783723 0.266853393575592 0.268080391903508 0.262092807280135 0.260461911952646 0.263438437226367 0.277110077984811 0.269133675296586 0.261361822705403 0.267914938389993 0.257834005983832 0.260102855483635 1 1 + 18250903 18251444 18251164.091 18249973 18251660 + gene protein_coding_gene FALSE TRUE AT1G49320.1 BURP domain-containing protein similar to RD22 (RESPONSIVE TO DESSICATION 22) [Arabidopsis thaliana] (TAIR:AT5G25610.1); similar to BURP domain containing protein [Brassica napus] (GB:AAC15700.1); contains InterPro domain BURP; (InterPro:IPR004873) 0.132202934976365 1.11500200029263 0.288870165096538 1 -0.0163981770179863 5.30128687026089 0.132202934976365 0.142761131980843
AT1G33500_at 0.809839794532306 1.21495980797629 0.839389980991504 1.38754552485015 1.25793697129302 1.00632509131447 0.625083189352696 0.931674486041766 0.966604915936207 1.06348606567839 1.31143630215919 0.668389515522566 1.29669814406531 0.996212822281903 1.07643861293033 1.00986832938913 0.761971768331283 1.15715371484026 0.981672251585938 0.176987508838468 0.180356376927407 0.179379687379534 0.184733068146203 0.180338390747284 0.181600455783041 0.184715766354377 0.177352260979028 0.188901246091208 0.181646945212715 0.176987508838468 0.189511558976391 0.178880672397641 0.176987508838468 0.190888832375821 0.187452315800726 0.184562960925220 0.18215209064115 0.179857926085117 1 1|0 +|/ 12153359 12154502 12154120 12152754 12154665 + gene protein_coding_gene FALSE TRUE AT1G33500.1 similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT3G22790.1); similar to hypothetical protein TTHERM_00463770 [Tetrahymena thermophila SB210] (GB:XP_001018874.1); similar to hypothetical protein MCAP_0861 [Mycoplasma capricolum subsp. capricolum ATCC 27343] (GB:YP_424803.1); similar to Os08g0320300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061527.1) 0.129130073046504 1.11498539270013 0.288876975457648 1 -0.0164148704371853 2.02844047025578 0.129130073046504 0.136472392082134
AT1G13150_at 1.68368078407837 1.65077010000378 1.73489999461109 1.41029771649903 1.58885674148638 1.40897958870268 1.64595047490111 1.70043249061553 2.17331524553325 1.98503299810604 1.84380709593848 1.81231203556917 1.93638504190923 2.24077289061813 1.88270852898705 1.72049551835054 2.02719515106733 1.80804060007428 1.76827501749468 0.200426512655775 0.19857754011876 0.206666085278979 0.19501836493662 0.197052150147586 0.194356360578977 0.206083252042721 0.198738759988143 0.205208830705474 0.20919054692786 0.196294499244613 0.201923915637979 0.195010849832639 0.204197410843953 0.195661524721534 0.196609356356020 0.194997157455191 0.195699424315708 0.203638350152605 1 1 - 4482023 4482478 4482229.636 4481872 4483693 - gene protein_coding_gene FALSE TRUE AT1G13150.1 CYP86C4 (cytochrome P450, family 86, subfamily C, polypeptide 4); oxygen binding member of CYP86C similar to CYP86C2 (cytochrome P450, family 86, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26125.1); similar to CYP86C3 (cytochrome P450, family 86, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13140.1); similar to cytochrome P450 [Brassica rapa subsp. pekinensis] (GB:AAK31592.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.100513215652644 -1.11496361058527 0.288885907949165 1 -0.0164367648268208 3.54523633379171 -0.100513215652644 0.06516004076571
AT3G59980_at 7.50529664220131 7.66883255064193 7.67940470445014 7.49559977900948 7.22301334692605 7.22294170469826 8.05293453117035 7.79519114376822 7.08370341992892 7.22956836030673 7.41312719857545 8.11672708571137 7.21965466313056 7.25755369628338 8.60468626212087 6.95426143619901 7.57042755839888 7.32789418962262 6.71316381847122 0.172636739640170 0.166362177196198 0.159903292737033 0.160301482152471 0.168403733511577 0.165891866252676 0.164324284784316 0.170626216581005 0.168164088041245 0.165437346364016 0.168588701123452 0.159903292737033 0.164807914397537 0.170542848243668 0.162350310816978 0.161978065743587 0.163650865088786 0.163909198496827 0.165424312518293 3 3|0 -|/ 22165534 22166285 22165900 22165221 22166618 - gene protein_coding_gene FALSE TRUE AT3G59980.1 tRNA-binding region domain-containing protein similar to methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative [Arabidopsis thaliana] (TAIR:AT4G13780.1); similar to tRNA-binding protein (ISS) [Ostreococcus tauri] (GB:CAL52895.1); similar to Os04g0303900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052413.1); similar to OSJNBa0079M09.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40498.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Endothelial monocyte-activating polypeptide II precursor pro-EMAP II; (InterPro:IPR008232); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain t-RNA-binding region; (InterPro:IPR002547) 0.0994529059225873 1.11444071838415 0.289100401357737 1 -0.0169622522934954 14.8638284891037 0.0994529059225873 0.0616618568524848
AT3G49920_at 2.93456489113648 3.07370011236091 3.06290644847258 3.27572779658083 2.88548619410804 2.70152311548601 2.59009555235371 2.60284832085871 3.33202403033846 3.31525368385283 3.76615592494312 3.12072391987438 3.51517909986963 3.49813360700159 3.32488869054847 3.17722096678215 3.27604100948428 3.53189523305261 3.51515264403426 0.176307755736421 0.168165804077293 0.174508226668558 0.175267754807129 0.168165804077293 0.173456528249157 0.175730993808749 0.172803119293075 0.189007718058423 0.17342267316685 0.171718632578865 0.168165804077293 0.181705581555932 0.168717734916510 0.175387174734804 0.171803941181769 0.181770921538751 0.176973833568458 0.183312974495741 3 3 - 18516837 18518404 18517234.545 18516821 18518684 - gene protein_coding_gene FALSE TRUE AT3G49920.1 porin, putative similar to porin, putative [Arabidopsis thaliana] (TAIR:AT5G67500.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) 0.0974558449268783 1.11407451143201 0.289250694526559 1 -0.0173301625439363 6.28523485017951 0.0974558449268783 0.0543558565213918
ATCG00600_at 8.97527232537317 9.97895834957614 9.72805310017623 10.2667944023015 9.7518483736692 9.11729222994795 9.8304968690326 10.1097893054176 10.1880378956925 10.3680438890497 10.2239887242305 10.8380722379223 9.93747011639732 10.3394017250045 8.84525399126773 10.6087088445956 9.22346624168078 10.1877257393277 10.5783214605571 0.162276645121885 0.165879848169765 0.168266890493947 0.166665010630196 0.169256212701672 0.183442655644286 0.164144891184526 0.168475823796398 0.172596774207847 0.168159905377789 0.162458832970099 0.165405644758777 0.160773293732399 0.181395441101495 0.180991555064858 0.161549841563716 0.179643405434645 0.187379743746959 0.165060722886938 C C + 66012 66087 66050.636 65998 66111 + gene protein_coding_gene FALSE TRUE ATCG00600.1 Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results in disruption of cytochrome b6-f complex. Identical to Cytochrome b6-f complex subunit 5 (Cytochrome b6-f complex subunit V) (Cytochrome b6-f complex subunit petG) (petG) [Arabidopsis Thaliana] (GB:P56775); similar to cytochrome b6/f complex subunit V [Nuphar advena] (GB:AAZ03999.1); similar to cytochrome b6/f complex subunit V [Nicotiana tabacum] (GB:NP_054520.1); similar to cytochrome b6/f complex subunit V [Oryza sativa (indica cultivar-group)] (GB:YP_654227.1); contains InterPro domain Cytochrome b6/f complex, subunit 5; (InterPro:IPR003683) -0.180127824186316 -1.11403424490251 0.289267223779991 1 -0.0173706106141825 19.9216358032633 -0.180127824186316 0.230773023234379
AT2G13840_at 5.58362209957825 5.50312916975212 5.20625500810133 5.44871751858419 5.62037851166613 6.20407446221592 5.39802670577958 5.27606440521879 5.08028057083839 5.14960600715927 5.0085092611768 4.73408222778208 4.76452056610719 4.34992516452902 4.8589968324425 4.59581078758122 5.00216657306424 4.72757764621998 5.28185881626863 0.19214503053924 0.18761699565742 0.199352294273167 0.192438633860508 0.184068320685471 0.192972722072695 0.187879253244605 0.191207752355466 0.201537622514274 0.191046617750718 0.187999785591372 0.187081369652326 0.192687013197691 0.186954648341581 0.190838029721191 0.183870870142791 0.185236540529846 0.1925293484978 0.196659348774477 2 0|2 /|- 5795729 5796299 5795988.4 5795634 5798208 - gene protein_coding_gene FALSE TRUE AT2G13840.1 PHP domain-containing protein similar to Os03g0192000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049236.1); similar to putative PHP domain N-terminal re (GB:BAD15560.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain PHP, C-terminal; (InterPro:IPR004013); contains InterPro domain Phosphoesterase PHP, N-terminal; (InterPro:IPR003141) -0.117868692833090 -1.11379390064886 0.289365899274570 1 -0.017612014771772 10.4929237003379 -0.117868692833090 0.112264729466521
AT2G30300_at 1.28705673226753 1.73854776440807 1.56136668662894 1.51830837051555 1.32967879410939 1.56197739756708 1.61445665976145 2.00211002597735 1.4681108992926 1.96338151331159 1.60371266179166 1.36638734717314 1.31897005940147 1.70701520730455 1.50728007364579 1.56500332978688 2.07270916525721 1.30554714217095 1.43578000523098 0.200708297852195 0.199304375952882 0.202313228816201 0.206720928947788 0.197659639762728 0.208012664455331 0.208458751480001 0.202103111433712 0.197789215416834 0.209430537562952 0.199014921164367 0.198974196723143 0.202597398041423 0.202652701583262 0.206482677663340 0.202903547357535 0.210591947912322 0.205050742329605 0.202524587071098 2 2 + 12927439 12928265 12927972.182 12926478 12928299 + gene protein_coding_gene FALSE TRUE AT2G30300.1 nodulin-related similar to NFD4 (NUCLEAR FUSION DEFECTIVE 4) [Arabidopsis thaliana] (TAIR:AT1G31470.1); similar to Os05g0475700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055832.1); similar to nodulin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73446.1); similar to Os01g0825500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044670.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.117152999680145 -1.11301387603271 0.289686323796144 1 -0.0183951997000448 3.16581393520185 -0.117152999680145 0.110800394834476
AT2G31370_at 6.40026956655704 7.11938348459531 7.22012380992416 7.35854089119839 7.27953955207883 6.86484336418743 7.52263879146534 7.53331077654866 6.83860281232869 6.56408882768478 7.08945050235919 6.84482601789146 7.02207257224936 6.99910134868048 6.87268327700382 7.34084676763276 6.33553841084521 6.83946575729504 6.66166144918634 0.200154349991557 0.205542602631276 0.201417688939577 0.204269512892760 0.206169854512238 0.20344053747991 0.210587327325839 0.201094829892459 0.215743304471524 0.207889400424706 0.204536055621558 0.200757387965452 0.200462669668894 0.204543842106021 0.204441358228030 0.199447643662782 0.213990017865548 0.211793138094667 0.209686571153850 2 2 + 13387362 13388118 13387807.545 13386021 13388600 + gene protein_coding_gene FALSE TRUE AT2G31370.1|AT2G31370.2|AT2G31370.3|AT2G31370.4|AT2G31370.5 bZIP transcription factor (POSF21)|DNA binding / transcription factor Identical to Probable transcription factor PosF21 (AtbZIP59) (POSF21) [Arabidopsis Thaliana] (GB:Q04088); similar to bZIP transcription factor, putative (bZIP69) [Arabidopsis thaliana] (TAIR:AT1G06070.1); similar to Transcription factor RF2a (GB:Q69IL4); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.133370817450170 1.11279066409989 0.289778066715642 1 -0.0186192373136547 13.9653891686417 0.133370817450170 0.145651068417402
AT3G27220_at 2.07036097043558 1.46079850939712 1.79133798936743 2.17404872981929 2.12748504706974 2.15799573455589 2.22517876704934 1.97052346632564 2.20185139325291 2.03524044204032 2.14680306149569 1.98294939331436 2.42842864126295 1.91571913389770 1.94148308526201 2.42818741027514 2.57171894121683 1.97167847482301 1.91496444936827 0.211965931873663 0.201161202268742 0.196692880494762 0.198550989346418 0.196692880494762 0.197826150962116 0.200140524715104 0.200910200010865 0.197434770601571 0.198090926667907 0.200845304330201 0.197782248747928 0.203580309840252 0.200561515322928 0.199694662252346 0.198118240158119 0.203431561873697 0.213499890152095 0.200551140645554 3 3|0 -|/ 10053023 10053783 10053444.6 10052849 10054915 - gene protein_coding_gene FALSE TRUE AT3G27220.1 kelch repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51540.1); similar to Glycosyl hydrolase family 98, putative carbohydrate binding module [Deinococcus geothermalis DSM 11300] (GB:YP_594177.1); similar to Os08g0128000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060908.1); similar to Os04g0487100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053143.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.126843518187064 1.11277476012531 0.289784604302421 1 -0.0186351987820876 4.10924437470948 0.126843518187064 0.132227141253886
AT4G26620_at 7.84059343363705 7.84626801499769 7.5307608389837 7.39541082628633 7.54361479280728 7.72971466871112 6.98867839770866 7.47125168609449 7.45648749702747 6.91290042703822 6.75138180098675 6.66904534040024 6.65301598221505 7.41144356362155 6.57658384271414 7.27685135867713 7.08262551356303 7.00812991400421 7.11399238999225 0.177113246661036 0.176989822239743 0.184079703330426 0.194935563358477 0.170613069209568 0.182292965539304 0.181201273898791 0.171247415868770 0.183220186320418 0.184102458230115 0.175416301142114 0.180007575263168 0.174664114445995 0.175511139253840 0.188901196683045 0.171451791629826 0.174605255784621 0.169598525768384 0.176007574285771 4 4 - 13427615 13428229 13427952.636 13427417 13429970 - gene protein_coding_gene FALSE TRUE AT4G26620.1 sucrase-related similar to sucrase-related [Arabidopsis thaliana] (TAIR:AT5G55900.1); similar to Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum] (GB:AAB33256.1); similar to Os02g0725100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047981.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Sucraseferredoxin-like; (InterPro:IPR009737); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.109657354121122 -1.11264582089565 0.289837611052232 1 -0.0187645975716496 14.588167300341 -0.109657354121122 0.0925255123430198
AT4G01720_at 4.79670620934496 5.42810608665293 3.76974154598468 3.8785568644504 4.99871418414894 5.09498936933453 2.45896712443639 2.78714700885236 4.30184239270463 2.74630756561986 2.58816161125493 2.27054302709458 2.44051838094778 3.30141688914351 2.74355510848026 2.62909440967594 1.94537054348575 2.3682886587468 3.00534520242074 0.292170132383084 0.291784813824308 0.293788673301701 0.287866720249984 0.28938069327472 0.286361643230689 0.283445472389618 0.292878027330568 0.280592408663496 0.280592408663496 0.283700987108864 0.283802382266323 0.280592408663496 0.281242885032574 0.285905959532946 0.280592408663496 0.298275061273606 0.285306386208763 0.280592408663496 4 4 + 747649 748195 747967.636 744921 748554 + gene protein_coding_gene FALSE TRUE AT4G01720.1 WRKY47 (WRKY DNA-binding protein 47); transcription factor member of WRKY Transcription Factor; Group II-b Identical to Probable WRKY transcription factor 47 (WRKY DNA-binding protein 47) (WRKY47) [Arabidopsis Thaliana] (GB:Q9ZSI7;GB:Q9M116); similar to WRKY42 (WRKY DNA-binding protein 42), transcription factor [Arabidopsis thaliana] (TAIR:AT4G04450.1); similar to Os01g0289600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042784.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABD32403.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.123763795660038 -1.11263650720376 0.289841440187592 1 -0.0187739440064815 7.09513286524337 -0.123763795660038 0.125685532200885
AT3G24240_at 2.11087021828248 2.27867221082857 1.99415991588419 2.71610290466613 1.5832480626824 2.30631152479405 1.93571948224175 2.29765724410183 2.4076504561065 2.65229870237956 2.34995962518948 1.79387083633182 2.10452097658607 2.47886947567991 2.53256578472726 1.95926545999063 2.01197114342878 2.42261719028115 2.48228297914504 0.206871784101019 0.206617920464671 0.207530040410555 0.208941409901400 0.206294248970218 0.209531855108946 0.203202824794754 0.207313197824915 0.205568207928640 0.208415632537831 0.205518514370457 0.203013670128956 0.208800910730101 0.204863944931131 0.209689500704088 0.214998167282435 0.204695831479333 0.203013670128956 0.205469060128981 3 3 + 8783397 8784099 8783795.818 8780431 8784375 + gene protein_coding_gene FALSE TRUE AT3G24240.1 leucine-rich repeat transmembrane protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G26540.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1); similar to ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G56040.2); similar to clavata-like kinase [Brachypodium sylvaticum] (GB:CAJ26360.1); similar to receptor protein kinase [Pinus sylvestris] (GB:CAC20842.1); similar to CLAVATA-like kinase [Triticum aestivum] (GB:CAJ19346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.156573252270220 -1.11237950783643 0.289947115607792 1 -0.0190318228172036 4.5132339158038 -0.156573252270220 0.189822816004468
AT3G25420_at 1.65141874764840 1.26698469103043 1.40917519906223 1.62891228917764 1.22764213907122 1.97862251295338 1.12732318014804 1.47419810778171 1.01027051646495 1.65642138642164 1.17528393670784 0.996860950588024 1.87066997370774 1.20523607100034 1.48147858617222 1.16614378801481 1.69557514742710 1.20769744260322 1.07525025156473 0.168837519256870 0.168837519256870 0.17332785593068 0.170042676585876 0.190158410170203 0.171322919646643 0.174715240989164 0.175296823051805 0.176807173399931 0.182896408492761 0.174983206714817 0.180704233975926 0.173960083202327 0.185188981257570 0.180579179259869 0.168837519256870 0.185403649134432 0.176871916305299 0.18340117236467 3 3|0 +|/ 9220869 9222035 9221541.333 9219069 9222162 + gene protein_coding_gene FALSE TRUE AT3G25420.1 SCPL21 (serine carboxypeptidase-like 21); serine carboxypeptidase similar to SCPL20 (serine carboxypeptidase-like 20), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G12910.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentum] (GB:AAF44708.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.141830519478930 1.11233051163412 0.289967265689709 1 -0.0190809814129705 2.76912575261485 0.141830519478930 0.162373574261027
AT4G17060_at 6.14644650605793 6.55021297684225 6.0193106926648 6.29411335741387 6.42161893277357 6.64741566170689 5.57545249823992 6.37843111061066 6.09628728602045 5.77037448969694 5.6899423404821 6.0053914760654 5.78230064487406 6.20358786848638 6.33199590090658 6.21052216321791 5.54763669589381 6.11794363121176 5.77455076443494 0.208136724147422 0.206169073339459 0.203229097510778 0.196715483817594 0.198388696023069 0.196771915829711 0.203837710470483 0.198423172907649 0.213307894353335 0.198544099168177 0.199941563695427 0.196715483817594 0.201923706544173 0.197610543630968 0.205771112024658 0.207606775002567 0.215931406776735 0.205066577117574 0.196715483817594 4 4 - 9593793 9594296 9594099.364 9593548 9595268 - gene protein_coding_gene FALSE TRUE AT4G17060.1 similar to transcription factor [Arabidopsis thaliana] (TAIR:AT2G44730.1); contains domain Origin of replication-binding domain, RBD-like (SSF55464) 0.14436989914678 1.11211985846404 0.290053910764732 1 -0.0192923135459074 12.1874098521352 0.14436989914678 0.167273485251273
AT1G63440_at 3.17917373782157 3.33332316150418 3.96031267127128 4.28671325481578 2.70723103630557 2.92212480191144 2.7969891232396 3.38506012008700 2.82895851166503 3.39517074509453 2.95073979978973 3.0524305178445 2.76286097883510 2.77166004387352 3.01399215656511 2.95902968592574 3.56047911545595 3.18835604473407 3.01924166603137 0.201128413665427 0.211765836916556 0.212818640349594 0.205879364235058 0.199981810424048 0.206165412648701 0.200181036914346 0.205126785021802 0.210633665755345 0.201761121268232 0.200046884848200 0.196431494707409 0.197441215139398 0.201694769957263 0.196623637292208 0.200192269540567 0.20537977073124 0.196061772810571 0.201966246852602 1 1 + 23534098 23534688 23534464.182 23531320 23534774 + gene protein_coding_gene FALSE TRUE AT1G63440.1 HMA5 (HEAVY METAL ATPASE 5); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed. Identical to Putative copper-transporting ATPase 3 (EC 3.6.3.4) (HMA5) [Arabidopsis Thaliana] (GB:Q9SH30); similar to RAN1 (RESPONSIVE-TO-ANTAGONIST1), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT5G44790.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE93624.1); similar to putative copper-exporting ATPase [Sorghum bicolor] (GB:AAT42168.1); similar to putative ATP dependent copper transporter [Zea mays] (GB:AAT42153.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P type cation/copper-transporter; (InterPro:IPR006403); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Copper-transporting ATPase 1; (InterPro:IPR001877); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) 0.123389403680293 1.11183156274958 0.290172523741842 1 -0.0195814879017574 6.37814958027369 0.123389403680293 0.125067913387299
AT2G21910_at 1.80395879946582 1.95848559882451 2.25468009720784 1.88584907844572 1.58183037862530 1.67654430077617 1.65029102312982 1.91319141436701 2.42667561467366 2.13389291958743 2.51104121436806 1.9922134188583 1.73727279865171 1.92768334995227 2.16474488414587 1.7794143535409 2.06283127915340 1.90670489438190 2.16414468136491 0.219346196382568 0.217054098281223 0.228468251459084 0.225047677304029 0.223893910209196 0.217794670373471 0.224566942828184 0.222970100989888 0.220554605349621 0.221989061858398 0.226669318107783 0.220700373531628 0.220654286521020 0.218604313255281 0.218374408087967 0.217052436342019 0.223012226884913 0.220696478252703 0.229269285506809 2 2 + 9349515 9350067 9349784.727 9348578 9350110 + gene protein_coding_gene FALSE TRUE AT2G21910.1 CYP96A5 (cytochrome P450, family 96, subfamily A, polypeptide 5); oxygen binding member of CYP96A similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A1 (cytochrome P450, family 96, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G23180.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.106544271463407 -1.11162938155066 0.290255729023951 1 -0.0197842504198109 3.96650850935872 -0.106544271463407 0.0844255287151946
AT1G12180_at 2.69657285983782 2.19967584542420 2.6084286175476 2.51722179758037 2.17725983028819 2.81138148061965 2.3628547231701 2.47265710787943 2.85564123932041 2.84209857311590 2.38221294451846 2.59576541702603 2.50003080247615 2.39299957890574 2.32193630774613 2.45891799810565 2.28093931593081 2.74053374771368 2.75390565164519 0.199714205448443 0.195564598192786 0.202777176214381 0.204651442895705 0.202915571532938 0.197747219838413 0.200850420553512 0.199307808390237 0.206301319200602 0.196447923838733 0.196423092476015 0.196034611794367 0.201829325778011 0.201790671267177 0.201176393306352 0.197151239948281 0.200618665458038 0.196768315948517 0.1981781512975 1 0|1 /|+ 4130663 4130889 4130788.8 4130419 4131135 + gene protein_coding_gene FALSE TRUE AT1G12180.1 similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT5G47600.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) -0.131207671604968 -1.11146990334596 0.290321373331283 1 -0.0199441668780963 5.11894761716675 -0.131207671604968 0.141587077682114
AT3G52170_at 2.18042009814571 1.86160455017065 2.14090644156602 2.09873485377460 2.56006915013970 2.34550566172081 2.14460201219940 2.73021005129105 2.27219808747815 2.37313934910032 2.51041408088284 2.5989333491874 2.58691716764866 2.53192942101239 3.09584735778279 2.66874842691982 2.47399698522893 3.01694435318729 2.85243442913642 0.157933333808063 0.166429507192038 0.166900141704802 0.165580026979362 0.171823205578463 0.166310670515539 0.165997542074932 0.166806350669205 0.167849445645686 0.160228889228850 0.159967554823686 0.163087906044126 0.162695885448237 0.162679300260502 0.164632629014922 0.157933333808063 0.170247242718952 0.164861739785037 0.159047834485560 3 3|0 -|/ 19358260 19359165 19358859.9 19357777 19360491 - gene protein_coding_gene FALSE TRUE AT3G52170.1 DNA binding similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.4); similar to plastid DNA-binding protein [Brassica napus] (GB:BAD90706.1) 0.121651976504108 1.11113015465005 0.290461258501775 1 -0.0202847895596815 4.85011844302744 0.121651976504108 0.121434081894292
AT1G69450_at 6.86331569768719 6.66186289017706 7.82294953185735 7.69473428733931 8.04993114261252 7.56496803460912 7.66811632466817 7.59459644713893 6.73058810900915 7.05742710310027 5.82356751573642 5.0358829770051 6.99346875206852 6.92676137303925 4.9381253871374 6.8879963981525 7.415827319735 6.90011621361135 6.40482907058809 0.204087858546704 0.197093082877862 0.208473655808148 0.195386582920712 0.196820366876584 0.195505918493211 0.20269688481087 0.203999695220881 0.20127021148103 0.195864432561902 0.196525407286533 0.195386582920712 0.198923160477120 0.207996428393106 0.196432005159795 0.203940027877897 0.197507134365531 0.200023506441425 0.196455965048013 1 1 - 26110788 26111477 26111179.545 26110783 26113811 - gene protein_coding_gene FALSE TRUE AT1G69450.1 similar to HYP1 (HYPOTHETICAL PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G01100.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.110221528507466 1.1109937834741 0.290517421349453 1 -0.0204214887018254 14.0381424626578 0.110221528507466 0.0944086980071666
AT1G79900_at 2.43549558759222 2.48069312294404 2.99388899167358 2.79800489937532 2.29713334286611 3.11528800035341 1.89817420953706 2.32343275941302 2.32585946826110 2.25891494250554 2.05944558406941 2.07321296501592 2.32214377133649 2.25114163275911 2.38321666963839 2.13144882570440 2.61014216061422 2.22968803672867 2.88554177007108 0.243770607699371 0.238256604401919 0.250692962944983 0.258052057461683 0.244329207797714 0.254374101502215 0.238875500014029 0.241019597766221 0.238902118103786 0.246960378108633 0.238256604401919 0.238256604401919 0.238603592705097 0.247386428210058 0.238256604401919 0.242358322048831 0.239452561602747 0.251177820042055 0.244527565820058 1 1 - 30057423 30057981 30057670.182 30057190 30058624 - gene protein_coding_gene FALSE TRUE AT1G79900.1 ATMBAC2/BAC2 (Arabidopsis mitochondrial basic amino acid carrier 2); L-ornithine transporter/ binding / carnitine:acyl carnitine antiporter encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol similar to BOU (A BOUT DE SOUFFLE), binding [Arabidopsis thaliana] (TAIR:AT5G46800.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE77727.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.142039725408135 1.11011879884415 0.290877971933050 1 -0.0212982662282216 4.9165940388923 0.142039725408135 0.163317699362507
AT1G77270_at 1.20596696494016 1.39449638266808 1.41536829674146 1.20231470742388 1.10950191655774 1.35434561202776 1.01496003104210 1.00681215454864 1.68428192529007 1.30804301546006 1.94678694732983 1.36766246165540 1.30851827801741 1.24539786181373 2.01393680645321 1.65172244737611 1.81995715245169 1.80184277382495 1.68550468953544 0.217071977560277 0.208959866074333 0.213981817955338 0.214616369087268 0.210516032322178 0.208550069717941 0.21025224299362 0.218036799966816 0.213551515086713 0.212673893684229 0.209643164057112 0.215032898917882 0.215326337743233 0.209380824246647 0.211746252450613 0.210207236319302 0.212825493318663 0.214568667156761 0.219978757686232 1 1 + 29034336 29034863 29034666.364 29032672 29036179 + gene protein_coding_gene FALSE TRUE AT1G77270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07730.1); similar to Hypothetical protein CBG09238 [Caenorhabditis briggsae] (GB:CAE64508.1) 0.100012648787367 1.11003054524912 0.290914357232548 1 -0.0213866707385904 2.81484807551563 0.100012648787367 0.0649704451696045
AT4G18700_at 7.91405273660003 7.75854520727304 7.94944914867256 7.70471372576851 8.6222951772092 7.8777202497947 8.46271312111878 7.79570631602215 8.4520791954968 8.57198766343707 8.81480347552637 8.72478408919047 8.93776353018164 8.83913277035129 8.22802169273618 8.75157873724595 8.92034201012082 8.68444115265013 8.45046049599625 0.124804100065301 0.117635486662495 0.118512537228458 0.125802579104166 0.123416353616477 0.115392128440795 0.132063912970184 0.122731629951620 0.124553037182714 0.122729633489261 0.117230958696014 0.122337946316638 0.116528995037336 0.117149084260586 0.124252534882276 0.120754977912787 0.138448712554664 0.128905752536283 0.118923960117709 4 4 - 10289123 10289623 10289364.818 10288809 10290861 - gene protein_coding_gene FALSE TRUE AT4G18700.1 CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIPK18), kinase [Arabidopsis thaliana] (TAIR:AT1G29230.1); similar to putative serine-threonine kinase [Gossypium hirsutum] (GB:AAT64036.1); similar to CBL-interacting protein kinase 19 [Populus trichocarpa] (GB:ABJ91226.1); similar to CBL-interacting protein kinase 18 [Populus trichocarpa] (GB:ABJ91225.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.150944772024032 1.10997727978853 0.290936319273324 1 -0.0214400246302984 16.6252082355876 0.150944772024032 0.180123880071343
AT3G54270_at 2.76501929910612 2.76115308773458 2.84663883015226 3.30086125647571 2.57141117104812 2.99237914168575 2.10563608065313 2.57158681039629 2.89803726164762 3.18109240382535 2.70815672034056 2.72620318421932 2.53327471093989 2.73052146499021 2.81459564475904 2.60472319291033 2.9877033343116 3.05005344290396 2.59559495778939 0.179492593517312 0.177615262482729 0.191222876442887 0.191169983464034 0.183027246792158 0.181539401288852 0.187849873229968 0.186556588009793 0.182343655817775 0.182608928072136 0.182673576681116 0.178606730349238 0.181041326109099 0.178275841819799 0.180744263816645 0.178393715754098 0.193724242183553 0.176699256271521 0.176699256271521 3 0|3 /|- 20098843 20099276 20099052.167 20098060 20100824 - gene protein_coding_gene FALSE TRUE AT3G54270.1 sucrose-phosphatase 3 (SPP3) similar to sucrose-phosphatase 1 (SPP1) [Arabidopsis thaliana] (TAIR:AT2G35840.2); similar to sucrose phosphate phosphatase [Malus x domestica] (GB:AAS79793.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Sucrose phosphatase, plant and cyanobacteria; (InterPro:IPR012847); contains InterPro domain Sucrose-phosphate phosphatase; (InterPro:IPR006378); contains InterPro domain Sucrose-6-phosphate phosphohydrolase C-terminal; (InterPro:IPR013679); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380) 0.127401433934505 1.10977858178174 0.291018256277875 1 -0.0216390348877218 5.56982512782782 0.127401433934505 0.134120945522454
AT3G14250_at 1.43271696398109 1.38996195746494 1.92284287576765 1.50537040622321 1.49125274489220 1.60818813519010 1.43237776587272 1.31586564770387 1.80433330997872 1.71517221473795 1.28847153030727 1.41658284922057 1.96577622180994 1.81418253360088 1.72128302819937 1.66403106108969 1.78746919489189 1.89163180445166 1.65429725401500 0.226408331366134 0.223789165788778 0.236305298586005 0.232730502763243 0.225287588765305 0.223299903569421 0.219715578263973 0.219715578263973 0.232781051584193 0.224965061710679 0.225217539801243 0.224138142932863 0.224800913205104 0.226689805645783 0.229383571232748 0.219715578263973 0.231114815951359 0.227001503363888 0.220793620344614 3 3 - 4745976 4746581 4746356.091 4745933 4746965 - gene protein_coding_gene FALSE TRUE AT3G14250.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G53690.1); similar to putative ubiquitin conjugating enzyme 7 interacting protein 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD28661.1); similar to Os09g0283600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062773.1); similar to Os08g0451800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061950.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.104130279232577 1.10972279613586 0.291041263765314 1 -0.0216949032010963 3.22146178923212 0.104130279232577 0.0780398276528223
AT2G20920_at 10.5588986675102 10.5071754013493 10.7759431836841 10.7340346315662 11.1083266594673 10.8954073486050 10.7560130320368 10.6663072263452 11.1444375223073 11.0411577421333 11.0496454972493 10.7245995405637 11.0196071086806 10.9246021473429 10.7924702557404 11.2958846975876 10.9992300674241 10.9997706433628 10.9455570739377 0.0621069351063541 0.0596029178517034 0.0639859306567557 0.0623365884816196 0.0596029178517034 0.0639808763937553 0.0621590550909727 0.0596029178517034 0.0662208766547726 0.0596029178517034 0.0605572433872513 0.0605632709260917 0.0596029178517034 0.0612669906634076 0.0602856849230189 0.0596029178517034 0.0602234731043581 0.0607335038330891 0.0607945215624947 2 2 + 9006094 9006840 9006562.182 9005767 9007013 + gene protein_coding_gene FALSE TRUE AT2G20920.1 similar to CDF1 (CELL GROWTH DEFECT FACTOR 1), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G23040.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93866.1) 0.0941690863190694 1.10959533125082 0.291093838925022 1 -0.021822548748224 21.7599851142555 0.0941690863190694 0.0416099809125366
AT4G39570_at 4.75481198485049 4.59997272998224 4.79020906820174 4.31619429476026 4.39471318863658 4.99683561700539 4.52661563403843 4.43789560491295 4.20404178285782 3.83977975394482 4.00938455773549 4.36281476715871 4.03696846849269 4.33169002129887 4.29891825282009 4.09603353492157 4.32062002362476 4.60109241216314 4.09190897057707 0.21742911342068 0.218015124303651 0.221838691609987 0.21526513226103 0.220405798814957 0.225668960264392 0.221947279361287 0.215556593436223 0.225484624429557 0.219217786701060 0.21526513226103 0.229347973062059 0.215898285510989 0.21526513226103 0.219680415696170 0.215842342515568 0.217297678772403 0.21526513226103 0.216991109160442 4 4 - 18384249 18384811 18384476.273 18384094 18385538 - gene protein_coding_gene FALSE TRUE AT4G39570.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.128305403010989 1.10914709748304 0.291278778847351 1 -0.0222713269381370 8.75337289391692 0.128305403010989 0.136163107039097
AT3G02470_at 12.5067098984633 12.8080649662256 12.7343013911627 12.8577543272619 12.6243850411797 12.6618258726417 13.0859600588379 13.3396095241255 12.9554601000388 12.9347346483486 12.9813061354663 12.8902863064266 12.9784329875188 12.9568043277985 12.8084615417226 13.0324250964479 12.6099891865128 12.7619404515746 12.7073830242411 0.0675632196526703 0.0645704044018257 0.0643871203420605 0.0639037464050028 0.0642466325278215 0.0709445209601686 0.0649481829347319 0.0644456451604031 0.0727322155747525 0.0635672675392332 0.0646411543280664 0.0646174999889177 0.0635880683286719 0.0665906325363537 0.0668108567054993 0.0635700684385958 0.0756137765912966 0.0701832951534111 0.0635672675392332 3 3 + 510750 511248 510977.909 509103 511583 + gene protein_coding_gene FALSE TRUE AT3G02470.1|AT3G02470.2|AT3G02470.3 SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase|SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis. Identical to S-adenosylmethionine decarboxylase proenzyme 1 (EC 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] (SAMDC1) [Arabidopsis Thaliana] (GB:Q96286;GB:Q96531;GB:Q9M893); similar to adenosylmethionine decarboxylase [Arabidopsis thaliana] (TAIR:AT5G15950.2); similar to S-adenosylmethionine decarboxylase [Brassica juncea] (GB:AAS45435.1); similar to S-adenosylmethionine decarboxylase proenzyme 3 (AdoMetDC 3) (SamDC 3) [Contains: S-adenosylmethionine decarboxylase 3 alpha chain; S-adenosylmethionine decarboxylase 3 beta chain] (GB:Q9SDM8); contains InterPro domain S-adenosylmethionine decarboxylase; (InterPro:IPR001985) -0.101961478605439 -1.10870854838843 0.291459810217857 1 -0.0227102716966548 25.6989838908505 -0.101961478605439 0.0717280521579244
AT2G40316_at 5.26414987155801 5.54046047101332 5.34951258785045 5.14144408660197 5.85365540604902 5.69460907881527 6.02274475865707 5.94323585750824 5.0242699377176 5.12976933865249 5.14051254097256 5.12278236801521 5.16384252150774 4.98560585034114 4.77352947132325 5.32160194517232 5.19167079967234 5.08264724321831 5.19417865467662 0.185129902563260 0.184004270639494 0.187117707643253 0.189637644989357 0.184787262625041 0.189322853593799 0.188467281526449 0.190620121850485 0.191866478522779 0.183437208305275 0.187925288256571 0.185020380484567 0.188234501645614 0.188454130699148 0.192668936429334 0.185283055612037 0.184876139164832 0.18773087636662 0.186473429874038 2 2|0 +|/ 16843449 16845561 16844505.375 16843288 16846267 + gene protein_coding_gene FALSE TRUE AT2G40316.1|AT2G40316.2 similar to Os03g0296700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049832.1); similar to PREDICTED: hypothetical protein [Tribolium castaneum] (GB:XP_973862.1)|similar to Os03g0296700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049832.1); similar to PREDICTED: hypothetical protein [Tribolium castaneum] (GB:XP_973862.1); contains domain FAMILY NOT NAMED (PTHR15380); contains domain gb def: Hypothetical protein (PTHR15380:SF3) -0.100570500504681 -1.10850131967011 0.291545383481715 1 -0.0229176402262942 10.7081498828617 -0.100570500504681 0.0673041265633556
AT3G24450_at 1.45157913661576 1.56314181218394 1.61116169062897 1.67471288486343 1.33138299873136 1.62721548682159 1.43244022311964 1.30532431411965 1.96576864287825 1.72554101979821 2.01767731958639 1.88521676357230 2.22847675968539 2.10690722540754 1.60464950933244 2.09290380444690 1.65099850527093 2.11875401871665 1.97654934664519 0.196412024905703 0.193294137799823 0.192128973047654 0.194013629023356 0.194292322702463 0.201475140200408 0.197098554803504 0.199770717841783 0.205272319826209 0.206360517301214 0.204431475044783 0.194438133419026 0.192262427362116 0.19971136356857 0.205902508175987 0.193727972143661 0.198209269437161 0.200662412713787 0.193907824615846 3 3|0 -|/ 8880298 8881567 8881165.8 8880072 8881729 - gene protein_coding_gene FALSE TRUE AT3G24450.1 copper-binding family protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G37390.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE91607.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.0984542727816781 1.10847229080647 0.291557372234019 1 -0.0229466862580113 3.42586198073197 0.0984542727816781 0.059987920925838
AT3G60430_at 2.37260375987851 2.43689630978609 2.30129639716567 2.51253686686858 2.23052942864363 2.63566221528417 2.42704974102993 2.73471518134923 2.94357510106385 3.06656130809829 2.76165472668184 2.36970323697363 2.84208444926698 2.90120079959245 2.84799029763302 2.63201605508407 2.87048784608081 2.86743749547947 2.71951898817155 0.200201356126268 0.20088955647024 0.204655161826780 0.200762139239878 0.214791757146996 0.201538811454312 0.225792526256516 0.203982262438664 0.205203330470324 0.209241052516310 0.209071263750608 0.207935506206737 0.214498791597054 0.199661428908244 0.208648516395665 0.214315681987926 0.213020333995978 0.206997200051223 0.20552378618531 3 3|0 +|/ 22347266 22348267 22347731 22347088 22348305 + gene protein_coding_gene FALSE TRUE AT3G60430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60440.1); similar to pRIB5 protein [Ribes nigrum] (GB:CAA07566.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain PRIB5; (InterPro:IPR012398) -0.110561645057978 -1.10828430345024 0.291635019083810 1 -0.0231347704145628 5.29213973539752 -0.110561645057978 0.0959707347280262
AT1G08340_at 1.81735113075077 1.51196625688545 1.71100137620329 1.77760901394142 1.10208499399311 1.63127231292106 1.15069224358975 1.32840068190134 1.71219446893786 2.02116347671243 1.49956574988409 1.43595972777312 1.16655807940710 1.48476095325766 1.25934807286075 1.49751572960868 1.71959890752957 1.64664661545287 1.66766286132224 0.225885808795711 0.226598402105947 0.228009107674754 0.225885808795711 0.230156107188859 0.229350509241478 0.231291247055511 0.235305783172207 0.236902346743285 0.234989071725060 0.228211828241574 0.229467150525385 0.230860223792002 0.225885808795711 0.23587143351717 0.225885808795711 0.23111166283194 0.238738518693752 0.239612972865081 1 1|0 +|/ 2631887 2632625 2632199.9 2631065 2632868 + gene protein_coding_gene FALSE TRUE AT1G08340.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT5G22400.1); similar to RhoGAP1 [Nicotiana tabacum] (GB:ABG85154.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.116603346768113 -1.10813325920788 0.291697418342379 1 -0.0232858743849299 3.13583950050456 -0.116603346768113 0.110716582509467
AT4G10780_at 0.810978874708222 0.545369807209725 0.76737384981773 0.508504753391134 0.537766006474833 1.03229985469241 0.552499323856658 0.552960894516434 0.502796015963917 0.677402883553685 1.07299979125675 0.384587119880988 0.72006759701525 0.841687781488325 0.865023822472946 0.403160845252398 0.446137450980719 0.995934812636784 0.566450970224965 0.186711397183076 0.189089370854949 0.189976951122437 0.190449859351117 0.188789307733078 0.195051904334167 0.185421260381322 0.185421260381322 0.187783259319228 0.191220816692159 0.189935484791954 0.188434415049183 0.191644534973410 0.190253196558008 0.186782854282973 0.190302321334621 0.194323135209839 0.19372519862408 0.187901983031237 4 4 - 6634775 6635324 6635091.091 6634775 6637453 - gene protein_coding_gene FALSE TRUE AT4G10780.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Putative disease resistance protein At4g10780 [Arabidopsis Thaliana] (GB:O82484); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12290.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G12280.1); similar to RPS5 (RESISTANT TO P. SYRINGAE 5) [Arabidopsis thaliana] (TAIR:AT1G12220.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.115008585198382 1.10805863457021 0.291728250986516 1 -0.0233605225955347 1.31267743351866 0.115008585198382 0.106975966536185
AT4G00690_at 1.70738026839918 1.47249894349934 1.83035813968851 1.47135805064624 1.16776464685348 1.58259732073936 1.29023361530945 1.67341482457717 1.62067887358466 2.01996708492198 1.1817950730646 1.48475573163706 1.53342923788479 1.58010000766185 1.73898881133062 1.50612727873085 1.39435306928079 1.74727700655206 1.58467214065503 0.175481573492176 0.179772760357431 0.179513157790608 0.178396557253666 0.176806928009199 0.175746559750936 0.175620234898181 0.186799225224721 0.180549743314117 0.18356247691614 0.177409145987039 0.177245423481242 0.176810290374458 0.177862678643105 0.183155198892743 0.180509548618803 0.182712953450767 0.179520730124529 0.183256751067772 4 4|0 +|/ 281934 283066 282313.857 281645 283129 + gene protein_coding_gene FALSE TRUE AT4G00690.1 Ulp1 protease family protein similar to ESD4 (EARLY IN SHORT DAYS 4), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G15880.1); similar to putative SUMO protease [Oryza sativa (japonica cultivar-group)] (GB:BAB19414.1); similar to Os01g0355900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042999.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.121890898083558 -1.10794842412890 0.291773791184357 1 -0.0234707606697545 3.15576371458328 -0.121890898083558 0.122730324527901
AT2G32590_at 2.00225364313661 1.99928721524337 1.98244330024474 1.64433721316689 1.52844156739932 1.97072786165153 1.36381518221739 1.93459897080882 2.19761685791502 2.23146938004710 2.11566914287322 2.47071848235038 2.14192536332556 2.38739444624224 2.31849059797657 2.10019981728364 2.78583794940002 2.83516710876816 1.84956427795323 0.199180061179018 0.198249700695995 0.201413594566006 0.20322332616352 0.19596111589537 0.201666066926607 0.197284156355249 0.202069989733972 0.201310801353029 0.19596111589537 0.215987329565257 0.200564557823799 0.200629757958043 0.200675270752822 0.201439841314577 0.196617540340947 0.206568195576765 0.207982355296670 0.202457172795018 2 2|0 -|/ 13836497 13837165 13836668.3 13836497 13840286 - gene protein_coding_gene FALSE TRUE AT2G32590.1 similar to Barren [Medicago truncatula] (GB:ABD32414.1); contains InterPro domain Barren; (InterPro:IPR008418) 0.129020295493218 1.10776671170653 0.291848888722829 1 -0.0236524999513117 4.04689255364988 0.129020295493218 0.137981750661359
AT1G53640_at 3.11557714679709 2.94265642553782 3.66853460541368 3.4968449444688 2.96631091245345 3.65008562182966 3.21667902295900 3.20360288099579 3.73637665841122 3.76664826399158 3.66884130924641 3.23061907882054 3.34582311395415 3.12412416224795 3.50251368995605 3.40624847823029 3.34125000610477 4.34487350766647 3.22185197494432 0.196877689654832 0.203713206941589 0.198969589501104 0.208333090044740 0.201261475967147 0.208956444822587 0.198509198569809 0.203333908680542 0.204105773567249 0.201365901635928 0.200836205239114 0.204203522965620 0.203464640291673 0.205863719400179 0.199551865636384 0.199535683996718 0.213067564595279 0.219568003755477 0.207559353531290 1 1|0 -|/ 20024618 20028647 20026636.5 20024553 20029129 - gene protein_coding_gene FALSE TRUE AT1G53640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53625.1); similar to GRound-Like (grd related) family member (grl-17) [Caenorhabditis elegans] (GB:NP_506359.1); similar to hypothetical protein FG03825.1 [Gibberella zeae PH-1] (GB:XP_384001.1); contains domain SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE (PTHR23258); contains domain SOMATIC EMBRYOGENESIS RECEPTOR KINASE (PTHR23258:SF396) 0.123196427232464 1.10772303379297 0.291866942004988 1 -0.0236961808500173 6.81778426208726 0.123196427232464 0.125640278643397
AT2G46570_at 2.50246937462014 2.88592759737333 2.64567256657316 2.78229681335523 2.27031606069785 2.31864738278095 2.60499260060678 2.57003411000755 3.44736775914532 2.99424563184759 3.29787808255368 3.03194391852384 2.88243473362193 3.27566799837461 3.237266222613 3.11249532703220 3.16020716442458 3.2329683284527 3.22018392379478 0.219429011382014 0.219429011382014 0.225194585233939 0.220309249302657 0.224496394253435 0.237766407330844 0.224409794646572 0.221728951087448 0.228772644531331 0.22418893435084 0.221721171014281 0.221934043119637 0.229671300234944 0.226346680906911 0.223569573780809 0.220236273360033 0.22559813559335 0.230820178519119 0.224470254308644 2 2|0 +|/ 19135589 19136095 19135782.7 19133944 19136141 + gene protein_coding_gene FALSE TRUE AT2G46570.1 LAC6 (laccase 6); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to LAC5 (laccase 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G40370.1); similar to laccase [Populus trichocarpa] (GB:CAA74104.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.101682048889905 -1.10749596400940 0.291960809998328 1 -0.0239232444746105 5.75977297669127 -0.101682048889905 0.071197727003498
AT4G15955_at 3.73925479433803 3.08493253353135 3.74887947188956 3.13770471289409 3.35532829499902 3.22819812556157 3.53347110648119 2.64317394796866 2.53812618244421 2.38103909526677 2.32814149321388 2.13802713079513 2.48231887915176 2.59793276808492 2.76260691253913 2.45522466971456 2.94522485164861 3.07842768890305 2.19269850054350 0.299516850672483 0.297222938481446 0.296802205510013 0.300875096108733 0.294972366371936 0.295306695824965 0.296710957253871 0.29074663007622 0.293852211732175 0.293901692393382 0.303642426721945 0.307591056034159 0.295942980936320 0.28871064392578 0.292881318673958 0.28871064392578 0.292796027917412 0.291447872756535 0.305957772530058 4 4 - 9045173 9045499 9045354.556 9043727 9045613 - gene protein_coding_gene FALSE TRUE AT4G15955.1|AT4G15955.2 epoxide hydrolase-related|catalytic/ hydrolase similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089)|similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G15960.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.172593172797237 1.10727950638231 0.292050312618457 1 -0.0241396623747107 5.7934225277952 0.172593172797237 0.219613344826598
AT3G17620_at 0.915739291759678 0.720580015976556 1.06381779740989 1.16553687360418 0.821080712142919 1.08465596871378 1.12229318851114 0.665963598696652 0.76263159015758 1.08497338726710 1.09597577674818 1.11776700640641 0.904924602196655 1.15559833833080 0.880095346140009 0.900651592023278 1.20872596664283 0.810520168514827 1.04372670674060 0.201104518680546 0.200503503380042 0.204528458701324 0.200503503380042 0.207215861103043 0.201273009571470 0.201969365621433 0.203581190954036 0.219834212494688 0.207444894168625 0.204345226820093 0.207934337868732 0.201900632178999 0.208566651511060 0.216692464130762 0.201207563832063 0.202389101927279 0.208235570491364 0.209762341886538 3 3 - 6026569 6027073 6026835.455 6026452 6027700 - gene protein_coding_gene FALSE TRUE AT3G17620.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G16740.1); similar to F-box protein interaction domain [Medicago truncatula] (GB:ABE93710.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.111566967900984 1.10703318371396 0.292152189684789 1 -0.0243858996293950 1.93148821969208 0.111566967900984 0.0988295963985415
AT3G13120_at 11.2536003209089 11.1493288244939 10.5787587621453 10.6586987351891 11.2046039832157 11.0597661764670 11.3991116992471 11.1867055394894 11.063839759839 10.9234199649578 11.0544314343947 11.3361415923134 10.8076432711774 10.8160527779275 11.7222262114726 11.1378182607491 10.9871780672308 10.9330844230831 10.7701093355784 0.0926954701384785 0.0934963807890427 0.0925898454276407 0.0937943951745282 0.091008176570388 0.0953386540946246 0.0930320174229476 0.09166369113161 0.0995801562906277 0.0933668745861326 0.089575183012702 0.0912242190911298 0.095152782437593 0.0954970948005762 0.093575343407692 0.089575183012702 0.0933484426155087 0.0970039793547134 0.0958126914953917 3 3 - 4220342 4221497 4220947.182 4219782 4221637 - gene protein_coding_gene FALSE TRUE AT3G13120.1 30S ribosomal protein S10, chloroplast, putative Identical to 30S ribosomal protein S10, chloroplast precursor (RPS10) [Arabidopsis Thaliana] (GB:Q9LK61); similar to 30S ribosomal protein S10-like [Brassica napus] (GB:AAW22623.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, bacterial form; (InterPro:IPR005731) -0.0957653485560188 -1.10700024111466 0.2921658165449 1 -0.0244188275605838 22.0705442676039 -0.0957653485560188 0.049963764970465
AT1G43760_at 0.420612328896458 0.609264374880451 0.400311488119086 0.169807059433741 0.533479327960154 0.495138434151804 0.416763789714042 0.60637149416171 0.402780895392426 0.609378094226615 -0.0256398672271919 0.550628135667967 0.990354421463322 0.386813799384276 0.561515315328817 0.346618263503483 0.0704870430496793 0.601020720904729 0.54500734112502 0.208101433560002 0.201432958705056 0.207369909189843 0.207241716155054 0.209724045653479 0.217512682267031 0.201457232152746 0.201432958705056 0.207873765056461 0.201432958705056 0.206691035257127 0.201432958705056 0.204789652473448 0.207831015601894 0.207746734467953 0.202111469242646 0.212465696401159 0.206061397815239 0.206627730993444 1 1 - 16531347 16531895 16531613.273 16531320 16533505 - gene protein_coding_gene FALSE TRUE AT1G43760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40390.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain no description (G3D.3.60.10.10); contains domain DNase I-like (SSF56219); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain DNA/RNA polymerases (SSF56672); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.0986998170344684 -1.10662684970624 0.292320305738495 1 -0.0247919991859833 0.93360862346005 -0.0986998170344684 0.0614631581286915
AT3G11630_at 11.5423967482164 11.6802700149555 10.9822989435169 11.0830822874796 11.2256055847613 11.2882084433169 12.0377715736689 12.2111389251980 12.2661955578830 12.2145307294634 12.7416917206064 13.0241837498816 12.4528340181452 12.7424948866848 13.0732890706991 12.6836834508900 12.1159984466046 12.6376838066014 11.9671886079379 0.0708313320404229 0.0693055343986088 0.071976706129063 0.0706059652318816 0.0761219672403577 0.0712126031385222 0.0712884845576099 0.0688709785658475 0.072982838962431 0.070188084872061 0.0709681972182009 0.0688709785658475 0.0688709785658475 0.07172877075021 0.0754792058761735 0.0688709785658475 0.0774819023392129 0.070409964943771 0.0688709785658475 3 0|3 /|+ 3673020 3673901 3673454.25 3672126 3674081 + gene protein_coding_gene FALSE TRUE AT3G11630.1 2-cys peroxiredoxin, chloroplast (BAS1) Identical to 2-cys peroxiredoxin BAS1, chloroplast precursor (EC 1.11.1.15) (BAS1) [Arabidopsis Thaliana] (GB:Q96291;GB:P92938;GB:Q9S7Y0); similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to 2-cys peroxiredoxin BAS1, chloroplast precursor (Thiol-specific antioxidant protein) (GB:O24364); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; (InterPro:IPR000866) -0.0942090360358443 -1.10557313650901 0.292756613302327 1 -0.0258445614754084 23.9229902445687 -0.0942090360358443 0.0434851890685343
AT2G07320_at 1.56095701614730 1.40291726364571 1.91091902033386 1.61244127120129 1.37961698270577 1.33513330360996 1.76848768437618 1.53570326208521 1.65376774370631 1.70473904113606 1.48922241527793 1.35858243900052 1.29643263680483 1.67193526841918 1.61636624486200 1.29231460989575 1.83480012323669 1.69463909610442 1.82363018137511 0.184249883098846 0.195071168673111 0.190668105457517 0.187003185174902 0.185883752498147 0.185078130384149 0.189884434990871 0.185376532106986 0.193332153676512 0.196937729832802 0.186372481095324 0.186033089612747 0.196532418387731 0.188726754605944 0.189878873417976 0.184206693364282 0.185541955953363 0.185509448202455 0.199093243442689 2 0|2 /|- 3037410 3039779 3038858 3037410 3042857 - gene protein_coding_gene FALSE TRUE AT2G07320.1 SWIM zinc finger family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37880.1); similar to MuDRA-like transposase [Cucumis melo] (GB:AAS91797.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527) -0.101540523319936 -1.10525571074653 0.292888146584244 1 -0.0261614868792773 3.19285477198282 -0.101540523319936 0.0714011285225786
AT3G19440_at 1.90093209248712 2.58831160505669 2.41049393012249 2.66969624722373 2.13451677431129 2.37415212656467 2.3696133596373 2.09927036334317 2.05558548955261 1.59411916822570 1.86622805767487 2.04704895137324 1.69907925285138 1.98426036437469 2.33367448143724 1.58666939192964 2.16486460131704 1.64120994954675 1.78644151673846 0.235470487545458 0.235244575656207 0.230249596590585 0.227777952208755 0.228693097170025 0.227294237944243 0.227489178512680 0.23053139816197 0.229743252560947 0.229445107901498 0.228516327775103 0.230114733722568 0.233338535262144 0.231903254998388 0.230366952514442 0.226321752291390 0.227380376193159 0.240648712822878 0.228637907277987 3 3|0 +|/ 6742209 6743054 6742686.3 6740701 6743256 + gene protein_coding_gene FALSE TRUE AT3G19440.1 pseudouridine synthase family protein similar to pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G78910.1); similar to Os09g0103500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062556.1); similar to Os08g0520100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062265.1); similar to putative ribosomal large subunit pseudouridine synthase C protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09700.1); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) 0.130506785449330 1.10518576557910 0.292917136200766 1 -0.0262313122236388 4.18208736541932 0.130506785449330 0.141671100190779
AT3G43940_at 2.39871769811155 2.0952504675339 2.69855696735357 2.41832960821895 2.05265636281477 2.68602072780897 2.27883313055025 2.53013946413945 2.60761740366219 2.56313688989730 2.20102879967752 2.49567731971778 2.73896348177938 2.83934724317257 2.66968845780175 2.31887345201952 2.95184958310101 2.54823453082182 2.25806050194205 0.185969999249084 0.186374555172609 0.186171837799676 0.193536621811633 0.195618526602426 0.192633797882874 0.188591078208141 0.187100527693107 0.190571775893536 0.19974244407616 0.186342686919900 0.185317644322571 0.189127358172214 0.185620053442769 0.19323841290357 0.183607939979568 0.183556067696174 0.186416889993711 0.187703319223071 3 0|3 /|- 15775282 15775880 15775579.375 15775252 15776358 - gene protein_coding_gene FALSE TRUE AT3G43940.1 similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT4G12275.1) 0.128670993238091 1.10513127254107 0.292939723020962 1 -0.0262857095147259 4.93067778182239 0.128670993238091 0.137893733497718
AT1G56610_at 6.6749984860984 6.89886728607844 6.6831001042185 7.03518407855319 7.73146662122944 7.01111280575459 6.42612615905089 6.76244249545278 6.30008875792967 5.97880219785567 6.15539483769657 5.82939880567203 6.32692199558136 6.30609344304827 5.35424300936831 6.8724371578299 6.10452603498855 5.71370170296198 6.41963912936249 0.238883486919773 0.227982090701428 0.227982090701428 0.227982090701428 0.236413065532531 0.237531457131642 0.231118548125061 0.233404151887663 0.242541676651834 0.230530512046718 0.229395183332556 0.236233166724270 0.230726514059156 0.230943354669060 0.245467946595268 0.231568361502412 0.250197444573779 0.233889268135581 0.236719354068433 1 0|1 /|+ 21217098 21217585 21217358.111 21215620 21218227 + gene protein_coding_gene FALSE TRUE AT1G56610.1|AT1G56610.2 syntaxin-related family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14096.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85215.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.137301778723117 1.10495604102008 0.293012363788387 1 -0.0264606189271060 13.0607537471092 0.137301778723117 0.155373664307407
AT2G40480_at 2.29681743017598 2.08684362764397 1.94202178682060 2.00596740580937 1.90971035569589 1.83009315841015 2.65091730478875 2.47048021321866 2.77321139890016 2.85453953333567 3.03922264108331 3.49300135430884 2.84120544823349 3.26561860251145 3.66035635585687 2.68055537413022 3.34285917412869 2.98703973910527 3.07554988898361 0.186223438606095 0.17836471561982 0.182283485183906 0.179324970269855 0.181772370551053 0.178909749199315 0.174502472715083 0.178829032126428 0.179496952845119 0.180046870302311 0.179985942059296 0.183349704347194 0.181447809630502 0.188779603070505 0.186072615736988 0.174502472715083 0.195925914273251 0.186866644289512 0.181434615712772 2 2 + 16918952 16919467 16919239.636 16917442 16919670 + gene protein_coding_gene FALSE TRUE AT2G40480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56270.1); similar to putative myosin heavy chain [Dendrobium grex Madame Thong-In] (GB:AAD20814.1); similar to Os07g0677900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060633.1); similar to Os03g0339700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050061.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) -0.095842202421442 -1.10487192546259 0.293047238097513 1 -0.0265445721586057 5.18152271527521 -0.095842202421442 0.0510656374912904
AT3G25130_at 1.74212418369761 1.90666243313549 2.04864116292638 1.84896108338668 1.62239781860742 1.62466029107385 1.57646277393554 2.17813623934267 1.77808565395622 2.33761958118668 2.21454273296547 2.45677406839288 2.38650564271014 2.78628453455780 2.40401797873206 2.28926401161022 2.43128154596045 2.12164447119311 2.14492286859087 0.206531732624455 0.200191690201603 0.203059234387923 0.203731253599625 0.199478296808302 0.205112143526551 0.204185996655381 0.205630697311858 0.202848470288279 0.199862528896158 0.201448202206827 0.205846548821092 0.202185716995136 0.199478296808302 0.199478296808302 0.200517472712986 0.201634985991174 0.200642619113402 0.207181129009754 3 3 + 9153070 9153603 9153359 9152411 9153878 + gene protein_coding_gene FALSE TRUE AT3G25130.1 similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G47270.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93516.1) 0.117366010079051 1.10464487976347 0.293141387128672 1 -0.0267711547480822 4.0550884521848 0.117366010079051 0.113342356170458
AT2G45350_at 1.91894281003503 1.79365301390205 1.67318286334957 1.72043388542951 1.67516502745596 2.00410335241449 1.6374825121678 1.53018465800134 1.28719233063918 1.89746223197947 1.68055711865736 1.41262172319728 1.83576380100904 1.71483385838665 1.66794550433325 1.79782915681000 2.07858913659148 1.38484133684085 1.45387341073772 0.212611911291470 0.202425124024990 0.207640671486926 0.211631056114859 0.206419106830694 0.21174148579807 0.208281960899013 0.207065090047644 0.223165344162686 0.20506837509362 0.206040556671929 0.202892927618589 0.203528528247845 0.212571440694911 0.205373998342037 0.208215633896915 0.222164730734026 0.214966957574081 0.212378215919472 2 2 - 18702037 18702444 18702218.636 18701890 18703710 - gene protein_coding_gene FALSE TRUE AT2G45350.1 CRR4 (CHLORORESPIRATORY REDUCTION 4); binding Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to selenium-binding protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10060.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0993011234976396 1.10461284985719 0.293154670834795 1 -0.0268031163906524 3.36554286314298 0.0993011234976396 0.0642038501010762
AT3G08890_at 5.26319743190933 4.98819128388878 4.58029260841678 4.51536129791056 4.53522079661728 4.83976544721241 5.12698175326283 5.43328761347972 4.31586573704242 4.34694370859775 5.2170181003644 5.00014567070531 4.65499603137311 4.45367999086098 4.84066741338545 4.41983557317474 4.47305689229216 5.00156717455892 4.50005050298669 0.213638420793542 0.215549910778157 0.213892563071217 0.218127129748957 0.215410042264982 0.220284079888481 0.215288426904366 0.216903823100054 0.223568954783798 0.21497634885281 0.212421261752802 0.217174187719222 0.219220910279373 0.223161489004275 0.229075371448302 0.216964647460799 0.22080419752221 0.224033052130198 0.218833773577075 3 3|0 +|/ 2706724 2707665 2707348.333 2706638 2708753 + gene protein_coding_gene FALSE TRUE AT3G08890.1|AT3G08890.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37070.1); similar to Protein of unknown function, DUF538 [Medicago truncatula] (GB:ABE91533.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.107626805066069 -1.10428046440888 0.293292547702710 1 -0.0271347506442268 9.48290769844471 -0.107626805066069 0.0893228953382644
AT1G74770_at 2.39789106093396 2.25072743332571 2.06837997650299 2.09761202346390 2.31416509610619 2.25743794437744 2.18017225708339 2.27115276040935 3.04298111713048 2.61937623304720 2.71008296772029 3.03849712783939 3.04195462100237 2.79190013859458 2.74059550279522 2.59439321641707 2.69292572220395 2.5980120726485 2.94591927779813 0.197049919817945 0.193987352975808 0.185394212352969 0.190088330018091 0.192678278187642 0.19199334559808 0.186873872274823 0.190551995381463 0.194306293185944 0.191670444386828 0.185424363814552 0.183163974485432 0.195822596954001 0.187620570775281 0.193005188052745 0.184942822051760 0.186760226597142 0.186902127695631 0.184289289505563 1 1 - 28094821 28095311 28095109.909 28094772 28098495 - gene protein_coding_gene FALSE TRUE AT1G74770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18920.1); similar to Os01g0689300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043922.1); similar to putative E3 ubiquitin ligase [Lotus japonicus] (GB:BAF38781.1); contains InterPro domain Hemerythrin HHE cation binding region; (InterPro:IPR012312) -0.0919837446657022 -1.10411989977969 0.293359169347750 1 -0.0272949244256241 5.052427675931 -0.0919837446657022 0.0319130196978355
AT2G29750_at 0.497750047406173 0.647171991381734 0.475940175619654 0.48665357216916 0.290565830758957 0.348142593611167 0.370689024575232 0.68286291058802 0.67331477697696 0.369179411842349 0.262361538295542 0.347421328534119 0.507164480291635 0.52522640579841 0.259204623202153 0.403987649646345 0.56565452199262 0.498752084661007 0.362744475644609 0.178607940243307 0.173337567334168 0.174376961659130 0.172035062412253 0.171042063811343 0.174241764268206 0.172658955698462 0.173328905017769 0.168388635270834 0.173804079471228 0.168185271188372 0.171218730366888 0.175364138582889 0.176121744423398 0.175256327403032 0.175623909101236 0.169379057903653 0.178639033424361 0.171265924439976 2 2 + 12717863 12718390 12718045 12716804 12718773 + gene protein_coding_gene FALSE TRUE AT2G29750.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G07260.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G29740.1); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 (GB:2ACV); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose (GB:2ACW); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.098242129774983 -1.10373815295749 0.293517610709517 1 -0.0276756688242122 0.919789251867446 -0.098242129774983 0.0607442362398476
AT3G45390_at 1.07140789726824 0.90370936605655 0.605892096806789 1.00845518017804 0.859748312608292 0.890396785390898 0.99626019783905 1.01059379381069 1.2289560793827 0.950783140703997 0.961186869539237 0.844960462700309 0.801894402570335 1.02621784048407 1.14970669600937 0.884652798246217 0.99598187156541 0.755284697224528 0.756242153884213 0.228670684337282 0.219222853163522 0.224452018502488 0.219652573791181 0.227754752203568 0.223347235383408 0.221551139939101 0.224087601061448 0.230619992429397 0.227739804297917 0.226295400094213 0.224686028583079 0.227152232881159 0.222865831418446 0.222592599736180 0.218788070689800 0.221427830638152 0.24326213828722 0.218788070689800 3 0|3 /|- 16658920 16659297 16659071.8 16658906 16660959 - gene protein_coding_gene FALSE TRUE AT3G45390.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G45330.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.102772236597749 -1.10358522121361 0.293581102360175 1 -0.0278281700814245 1.87138103513619 -0.102772236597749 0.075695268055387
AT2G46480_at 1.13258546722822 0.934493749792918 1.12855923466898 0.887071934565708 0.641276690413539 1.10992923960443 1.00269780154927 1.49762035342817 1.42217078867201 1.28260315867283 1.19553108646382 1.30311769663960 1.11102067443790 1.01986773130574 1.22390408631113 1.28779758875965 1.30914715411212 1.21256474559171 1.06610708699616 0.188585828830668 0.190584049545530 0.189807528263571 0.200928122878326 0.189236421289706 0.187212286673568 0.188457616418269 0.197675958978809 0.204537187721374 0.186640457385026 0.188461769162517 0.189173738374725 0.194113218044548 0.191850866457267 0.193423177712825 0.188947633856671 0.198037052785499 0.196576108379209 0.186362059427527 2 2 - 19083495 19084160 19083904.545 19083477 19085458 - gene protein_coding_gene FALSE TRUE AT2G46480.1 GAUT2/LGT2 (Galacturonosyltransferase 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT1/LGT1 (Galacturonosyltransferase 1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G61130.1); similar to Os09g0531900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063757.1); similar to 68 kDa protein [Cicer arietinum] (GB:CAB81547.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) -0.124615783757052 -1.10340983688445 0.293653928455240 1 -0.0280030403641198 2.27419390402292 -0.124615783757052 0.129749456804463
AT1G05280_at 0.808014678369015 0.85964822291063 0.883428963523969 1.29644482244960 0.500021340876138 1.20467754947431 0.848909435986164 1.22617348425789 1.18629996047534 1.1380654987212 1.17814854541994 0.879956181053704 0.400219079595212 0.460333592564645 0.879927562021699 0.352569716314633 1.09712319240856 0.867161593377651 0.899710995736297 0.216384469483185 0.220479040958349 0.216384469483185 0.221324993722025 0.22156451132023 0.217800650447756 0.219442280938118 0.220572381974901 0.220459037403825 0.230694477462103 0.223307543635809 0.226908556101760 0.223117411207708 0.217869810625587 0.228108607073448 0.221178267118691 0.220129903858089 0.223129065161794 0.22007126481336 1 1 - 1535585 1536117 1535807.909 1535443 1537524 - gene protein_coding_gene FALSE TRUE AT1G05280.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G15240.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) -0.137402752549848 -1.10340391230600 0.293656388802189 1 -0.0280089471979877 1.87297585447536 -0.137402752549848 0.155952563203859
AT4G39720_at 2.02721820947758 2.23305926092749 1.92836821960452 1.82589149018949 1.93657893343291 2.04738455959434 2.04970009643748 2.47935363530879 1.77903344910360 2.20160817754508 1.6899906913412 2.19211412153776 2.32587616574017 2.42061119130411 2.02743348880387 2.32731437226489 1.53803728435871 2.30147758398407 2.17857789585274 0.213384773393929 0.214343857745942 0.215480158611712 0.217375835232177 0.216887251260579 0.217620895356606 0.214987803632555 0.210462662760968 0.211012309020403 0.217154955015253 0.220822353925136 0.210226483525828 0.215058267478755 0.210917083486067 0.211862376177278 0.212261847735752 0.231569826047193 0.214483331585996 0.211999563323726 4 4 - 18429991 18430534 18430247.182 18429886 18430944 - gene protein_coding_gene FALSE TRUE AT4G39720.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT5G65170.1); similar to VQ [Medicago truncatula] (GB:ABE94086.1); contains InterPro domain VQ; (InterPro:IPR008889) -0.106496655791404 -1.10339109677216 0.29366171086519 1 -0.0280217242633849 4.14390931891357 -0.106496655791404 0.0864844156098
AT4G32410_at 9.80012279595506 9.94680509790797 9.16563767705036 9.61565117572088 10.4123536130977 9.50500214134547 10.812227014785 10.4972996896455 10.7753470608972 10.7249919008191 11.3181239960538 11.0752104098004 10.9288337217085 11.1710005824155 10.9419882077387 10.7877649700983 10.3334733294262 11.1202678278529 10.5270011779015 0.120608976664048 0.119480623158083 0.135745940291246 0.121779517064484 0.114270495119164 0.131293280791599 0.113790696882448 0.118194975732946 0.121792639961198 0.117000611612529 0.113790696882448 0.113790696882448 0.116133174794081 0.117959235973285 0.119894345746121 0.113790696882448 0.121836528251599 0.118591556727598 0.115644042956418 4 4 - 15641056 15641561 15641306.273 15640626 15646671 - gene protein_coding_gene FALSE TRUE AT4G32410.1 CESA1 (CELLULASE SYNTHASE 1); transferase, transferring glycosyl groups cellulose synthase catalytic subunit Identical to Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) (CESA1) [Arabidopsis Thaliana] (GB:O48946); similar to CESA3 (CELLULASE SYNTHASE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G05170.1); similar to CESA10 (CELLULASE SYNTHASE 10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G25540.1); similar to IRX3 (IRREGULAR XYLEM 3, MURUS 10), cellulose synthase [Arabidopsis thaliana] (TAIR:AT5G17420.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25536.1); similar to cellulose synthase 5 [Eucalyptus grandis] (GB:AAY60847.1); similar to CesA1 [Acacia man (GB:AAT66940.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.152824831836117 -1.103263453237 0.293714722986279 1 -0.028148978310635 20.7870688642765 -0.152824831836117 0.185297327520922
AT1G32370_at 5.41674797330679 5.60059941541296 5.57852512830085 5.47631976502855 5.8384296917554 5.8896200362921 5.34917097583047 5.1839251060222 5.23953405659654 5.20361124879778 5.52076336543961 5.21580308097324 5.25420303042512 4.98627116575105 5.37150931191738 5.26004371240651 4.99927747015625 5.24931329355584 5.60891433189028 0.21063844137154 0.203246676130065 0.213909936472446 0.209900112792972 0.222170154372952 0.216942382409857 0.201869126413678 0.207059180052209 0.209299071743567 0.208708985199842 0.206062634518233 0.20358725662353 0.214519271948676 0.213653829600259 0.202752706240729 0.202307845249514 0.225906410037365 0.207474698955208 0.209839015570290 1 1|0 +|/ 11677013 11677881 11677309 11676941 11678429 + gene protein_coding_gene FALSE TRUE AT1G32370.1|AT1G32370.2|AT1G32370.3|AT1G32370.4 TOM2B (tobamovirus multiplication protein 2B) Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta. similar to hypothetical protein MtrDRAFT_AC144430g21v1 [Medicago truncatula] (GB:ABE91312.1) 0.0947871478838547 1.10316959865829 0.293753706765092 1 -0.0282425391527727 10.8330845612885 0.0947871478838547 0.0471312519600932
AT4G28440_at 7.80123445708501 7.81128001563091 7.87723323886683 7.73588262225109 7.56722092301757 7.32315366966205 7.53307256806488 7.62595143747291 7.31145976564921 6.84896361702265 7.29037060058124 7.25317421888402 7.4768357186977 7.70451859166895 7.47533354061532 7.19463472448512 7.11057235922744 6.80789211735201 6.9313728513331 0.147580864706105 0.143155983690196 0.146349627744438 0.142748073414748 0.145423626563629 0.148291632914441 0.142748073414748 0.147296242438438 0.145484856988819 0.147944019217345 0.144240785333039 0.146536888200535 0.149204268800782 0.146524847443413 0.142748073414748 0.148816853074258 0.163699814373857 0.159132304073630 0.155783277276677 4 4 + 14060080 14060920 14060436.273 14059994 14061392 + gene protein_coding_gene FALSE TRUE AT4G28440.1 DNA-binding protein-related Identical to Protein At4g28440 [Arabidopsis Thaliana] (GB:O49453); similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G33845.1); similar to Os01g0238600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042538.1); similar to unknown [Medicago sativa] (GB:AAZ32857.1); similar to Os01g0754100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044277.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.0957778665783051 1.10316088801912 0.293757325048852 1 -0.0282512222143225 14.8192612308101 0.0957778665783051 0.051416814744751
AT2G30090_at 1.19966967680659 1.41931642672536 1.06884355382688 1.35119158847565 0.98395000095115 1.51073866422282 1.30589504192871 1.23665090548083 1.39350431164340 1.52422333686025 1.63860392533284 1.24075822209234 1.27527281368692 1.39651479185363 1.17466481024294 1.54932576383044 1.66680678461277 1.05455619674683 1.71764488792171 0.208165048156508 0.205941642758335 0.206990744864919 0.205684937649148 0.212365421344395 0.206884697406459 0.210830879381259 0.204044743074951 0.212756330137384 0.208892925862019 0.215935394882267 0.212036729040494 0.208076737200762 0.211205502206002 0.216794250320558 0.207934589665988 0.208763843492269 0.213979397555753 0.206212281840363 2 2 - 12850683 12851211 12850949.636 12850660 12852674 - gene protein_coding_gene FALSE TRUE AT2G30090.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to HLS1 (HOOKLESS 1), N-acetyltransferase [Arabidopsis thaliana] (TAIR:AT4G37580.1); similar to Os03g0764000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051365.1); similar to putative N-acetyltransferase hookless1 [Brassica napus] (GB:CAC80824.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.116131663062432 -1.10312968558819 0.293770286404247 1 -0.0282823254188538 2.71937552848139 -0.116131663062432 0.110845011521865
AT4G36060_at 0.710700866989086 1.10539466158097 1.09891924872715 1.11851803580180 0.583555419736685 1.12972639032630 1.10344033095650 1.49609126294363 1.49950834751871 1.41586802057288 1.53843880152959 1.02723188486284 0.328070839802182 0.932697620170797 1.38907048131379 1.32848548567418 1.33432147917353 2.09079617200940 1.22162245140802 0.253235770977066 0.262556356687925 0.257319686036492 0.253235770977066 0.261329760024962 0.262160607072713 0.253235770977066 0.261465249489554 0.256062146947044 0.265403857078089 0.259299543359998 0.263039747145064 0.260477432502371 0.259513420462757 0.260137764620055 0.253235770977066 0.258763377567674 0.256931943195672 0.259423186362255 4 4 + 17055783 17056478 17056177.286 17055324 17056707 + gene protein_coding_gene FALSE TRUE AT4G36060.1|AT4G36060.2 basic helix-loop-helix (bHLH) family protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G19860.2); similar to Os02g0433600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046730.1); similar to Os02g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046728.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91241.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.127043758951197 -1.10298909907137 0.293828690872146 1 -0.0284224563170861 2.35586262816622 -0.127043758951197 0.135009789919593
AT2G32940_at 2.14507019304221 1.96620866062001 1.70250392017562 2.11021310933956 1.32569616639625 1.84420011321559 1.44592317066690 1.73065315962305 1.69093019100197 1.65078182423917 1.78186965633682 2.20638517573322 2.26784919452772 1.97354129484693 1.87197872647725 1.92884399481128 1.66504860443758 2.06410571581865 1.59646424665855 0.255708303615163 0.250125074575441 0.257399628330985 0.259644664309054 0.261763351732342 0.260114648585555 0.247629669247325 0.253434858108388 0.25402908192529 0.248853143137475 0.263262126255217 0.247629669247325 0.259055079939056 0.263295847157883 0.247629669247325 0.257707486204831 0.249929615954668 0.252675927833071 0.247629669247325 2 2 - 13979319 13980053 13979605.25 13979074 13984553 - gene protein_coding_gene FALSE TRUE AT2G32940.1 PAZ domain-containing protein / piwi domain-containing protein similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21030.1); similar to AGO4 (ARGONAUTE 4) [Arabidopsis thaliana] (TAIR:AT2G27040.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21150.1); similar to AGO4-2 [Nicotiana benthamiana] (GB:ABC61505.1); similar to putative ARGONAUTE9 protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84805.1); similar to Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi [Medicago truncatula] (GB:ABE82627.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) 0.123791786350416 1.10279911798657 0.293907629672194 1 -0.0286117994908532 3.59181433630502 0.123791786350416 0.128123079377417
AT1G04950_at 4.66861169691448 5.04571665284168 4.76529532011997 4.93547158767297 5.26774911650935 5.15297194640248 5.02516055021049 5.52601703071466 5.06845175046886 5.34569248964251 5.3855529212779 5.06292881161243 5.27959085424392 5.03467860102258 5.04289298420442 5.2343137082192 4.94132169832413 5.06070448000036 5.57368113183267 0.208334604680199 0.200731458259148 0.203203658695786 0.201148682637840 0.202546661666447 0.210165345586267 0.199507816008616 0.202827721576957 0.212589837810959 0.202882320539367 0.199202626477288 0.200568332125435 0.199203311740422 0.204769888881386 0.205922130004719 0.200656098266889 0.213409640293357 0.210638335973825 0.203519184749272 1 0|1 /|- 1403620 1404066 1403827.444 1403084 1407500 - gene protein_coding_gene FALSE TRUE AT1G04950.1|AT1G04950.2|AT1G04950.3 TAFII59 (TATA box associated factor II 59); transcription initiation factor putative TBP-associated 59 kDa subunit protein (TAFII59) similar to RNA polymerase II transcription factor/ binding / transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G54360.4); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); similar to hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] (GB:NP_587928.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain TATA box binding protein associated factor (TAF); (InterPro:IPR004823); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442) -0.117515803306180 -1.10270557872418 0.293946502020764 1 -0.0287050152898621 10.2781358033455 -0.117515803306180 0.114163510190186
AT3G02350_at 8.170212439006 8.68525111845562 7.66518558148029 8.22577555317114 8.26947121402863 8.33550215494544 9.0871099558868 9.19981623854848 8.55184872306734 8.55535460443158 9.14991644788925 9.27985207878598 8.75510671715947 8.77366704955656 9.1455338580354 8.93562019273405 8.55644980931098 9.16068149032725 8.57476537294048 0.158780781375986 0.151669982621912 0.159929830905529 0.153242345453408 0.151737937392599 0.153276868224538 0.157115260516556 0.146729393168793 0.168161506048813 0.154359078613238 0.156530014750566 0.151764457085474 0.155864529178729 0.147946924748172 0.164142754768459 0.146981071395680 0.157249044299873 0.151109910613193 0.15043457041524 3 3 + 480486 481102 480804.455 479013 481481 + gene protein_coding_gene FALSE TRUE AT3G02350.1 GAUT9 (Galacturonosyltransferase 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. Identical to Probable glycosyltransferase At3g02350 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q9FWA4); similar to QUA1 (QUASIMODO1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G25140.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96860.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE89660.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96904.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.126333295036392 -1.10234893546995 0.294094749296326 1 -0.0290603684539533 17.2199203764176 -0.126333295036392 0.133665964775268
AT3G20480_at 2.69442039031902 2.70749882923244 2.77575834951790 2.89128765614199 2.90623017634925 2.79760193729741 2.68996262702851 2.72087374189076 2.60898331519471 2.67319763563717 2.61084745576802 2.48500649301452 2.51912459133055 2.80413078050874 3.05410405778013 2.98310531941384 2.98796105368997 2.93500624114632 2.98135894910224 0.209122668295836 0.205912710226941 0.202818581269307 0.210621960895976 0.201312140948953 0.205141796652810 0.204952084884991 0.218116104723651 0.203579828990495 0.205759074038977 0.201427630696857 0.201312140948953 0.204075593112427 0.208560618598108 0.205661019055851 0.204735538685649 0.208609742924198 0.211053643972707 0.206834195102364 3 3 - 7151508 7152475 7152096.273 7151430 7153398 - gene protein_coding_gene FALSE TRUE AT3G20480.1 tetraacyldisaccharide 4'-kinase family protein similar to Os07g0102000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058679.1); similar to Tetraacyldisaccharide-1-P 4'-kinase [Halothermothrix orenii H 168] (GB:ZP_01189426.1); contains InterPro domain Tetraacyldisaccharide-1-P 4' (InterPro:IPR003758) 0.0912140409062141 1.10165862508668 0.294381855947608 1 -0.0297479260239539 5.54891623800194 0.0912140409062141 0.0280506917594403
AT4G34110_at 10.9315322587287 10.9494752438784 10.5983003104083 10.6048595602633 10.7549203714354 10.7536133424333 10.6451243923398 10.6577483166444 10.8808309826150 10.9861806728453 10.9228493356885 10.9736782996615 10.9425667813523 10.9683279084921 10.9491670302845 10.8985351954734 10.8569451859489 10.8681653717385 11.0822781379538 0.0911862296301453 0.0902140446966268 0.0887239755642879 0.0896036353007355 0.0896697419066895 0.094567338436589 0.092141372606219 0.0936025180837682 0.0935893831884078 0.0916742180726315 0.0878536656558788 0.0878536656558788 0.088384211229334 0.0916698552471556 0.0907107602635147 0.0895504727180745 0.0979987338643016 0.0884972924028695 0.0878536656558788 4 4|0 +|/ 16338891 16339857 16339432.333 16336392 16340102 + gene protein_coding_gene FALSE TRUE AT4G34110.1 PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins. Identical to Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 2) (PAB2) [Arabidopsis Thaliana] (GB:P42731); similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to RNA-binding re (GB:ABE82276.1); similar to poly(A)-binding protein [Cucumis sativus] (GB:AAF63202.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66825.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0893069329937317 -1.10164115700704 0.29438912387121 1 -0.0297653200685464 21.6897597177088 -0.0893069329937317 0.00396912958835752
AT2G32630_at 2.06641554397963 1.58956413236408 1.83968442900960 1.45264965326127 1.62994562980799 2.08090551331756 1.74925410363844 1.98937597047777 1.97002941079508 2.24262783362421 1.96799501759046 1.95925365525577 1.51954109114566 2.11848398651410 1.73246047081838 1.80185723231808 1.74303467025321 2.09257630426707 1.86506152532877 0.218457399327687 0.209242113592775 0.206966435671568 0.211326316961857 0.206966435671568 0.212492736199188 0.208281122487676 0.215434022218588 0.209953371866172 0.21618932508691 0.210893720257412 0.215780923929135 0.227262219797619 0.213482202296138 0.209958934655369 0.208565053996359 0.213100890243113 0.216000877196457 0.213129943125273 2 2 + 13853195 13853759 13853541 13851911 13853785 + gene protein_coding_gene FALSE TRUE AT2G32630.1 pentatricopeptide (PPR) repeat-containing protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to Os07g0671200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060597.1); similar to Os10g0495200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064949.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92824.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.128431042164109 -1.10160349138506 0.294404795830311 1 -0.0298028253169935 3.74612765203356 -0.128431042164109 0.1382496129956
AT1G72490_at 0.640335763308504 0.969566641850056 0.805565481785528 1.06840636691579 0.824981726860404 0.750182384561914 0.94039606708235 0.98912788696149 1.18346714447333 1.24415203789179 0.873492365162453 1.02375588628036 1.63259323256804 0.755322097068216 0.983650266706759 0.462099956754222 1.03602914291356 0.564019023544443 0.866907621652427 0.247474484240788 0.247370927635040 0.258070269140759 0.251349071838264 0.252046003227044 0.248197632869061 0.244526353271516 0.251255201469562 0.244526353271516 0.244526353271516 0.251764594571283 0.250095218184436 0.256481206345233 0.247971078039751 0.251866805122805 0.250183273922458 0.250099953784419 0.250406308438076 0.254592888126768 1 1 - 27293276 27293709 27293521.125 27292570 27294702 - gene protein_coding_gene FALSE TRUE AT1G72490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17400.1); similar to Os09g0439800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063278.1); similar to Os07g0614400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060263.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89241.1) -0.102188977367058 -1.10143813008556 0.294473607125206 1 -0.0299674706520163 1.88084321377272 -0.102188977367058 0.074523702759394
AT1G11070_at 1.12952616999392 1.14472837143254 1.13279305011689 1.15479331543347 0.660314139430479 1.00102098003933 1.23224318044030 0.917463028028764 1.41044302129258 1.43123877085266 1.37937667319857 0.903566654326057 0.988191753308337 1.44295998024885 1.47223121783128 1.24543715154481 1.35673987136614 0.93972869030866 1.07499681379859 0.180651228543514 0.183795561802017 0.18880214858912 0.179262163610349 0.182404214284364 0.178806690412716 0.178806690412716 0.186018486486683 0.183788134839310 0.184884080777546 0.189690106356539 0.184996957838135 0.178806690412716 0.187598067422643 0.190643193746252 0.186225262698535 0.18399107391255 0.185189774260986 0.182770620496498 1 1 - 3690466 3691279 3690920.455 3690212 3692826 - gene protein_coding_gene FALSE TRUE AT1G11070.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G61080.1); similar to diaphanous protein [Entamoeba histolytica HM-1:IMSS] (GB:XP_653752.1); contains domain DIAPHANOUS HOMOLOG 1 (PTHR23213:SF17); contains domain FORMIN-RELATED (PTHR23213) -0.104145176258431 -1.10129329551537 0.294533886809939 1 -0.0301116622260185 2.30740454653006 -0.104145176258431 0.0804067194281777
AT1G13560_at 9.31097388461205 9.53533606552947 9.37895932508945 9.3518702710245 9.5549037929535 9.59397331675813 9.6524226653686 9.62996892741034 8.96887956470667 9.14100873811686 9.43147856490655 9.30742559190999 9.48336404352856 9.30380559526842 9.27020026121409 9.33580402288051 9.3459901446753 9.25235185674 9.16857019742136 0.114051433492083 0.109610508022142 0.106906324139079 0.107095758973312 0.112139147942805 0.106368300741963 0.109596359989071 0.112561308607072 0.116704505233518 0.110785128550136 0.104740768051257 0.108789506263192 0.110326342939501 0.119885801705031 0.109595890809018 0.107967673281443 0.109125610163977 0.108970305418988 0.108880226302825 1 1|0 -|/ 4638943 4640254 4639518.625 4638511 4642101 - gene protein_coding_gene FALSE TRUE AT1G13560.1|AT1G13560.2 AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase Encodes aminoalcoholphosphotransferase AAPT1. similar to AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE), phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT3G25585.4); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAB53764.1); similar to aminoalcoholphosphotransferase [Brassica rapa subsp. pekinensis] (GB:AAL46934.3); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAD56040.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.0931171503925408 1.1011718082211 0.294584456718152 1 -0.0302325987187029 18.7181120362043 0.0931171503925408 0.0398787953986517
AT3G51700_at 1.66378705967424 1.61582381434655 1.28590304739625 1.19430491109730 1.20470537145199 1.37201603882951 1.05977439396119 1.38675260259397 1.87603179735447 1.42425286960659 1.42041090425439 1.55238083584353 1.87652021386365 1.39478903955143 1.33751251414635 1.61728074752465 2.02428415780495 1.52417491094164 1.57497583505235 0.186604602293548 0.187540175906477 0.190962910960866 0.193136583753250 0.191699604245553 0.186634254212737 0.193323666836237 0.186232790144824 0.188250637304365 0.195409392169275 0.186232790144824 0.188065681944644 0.201805542331438 0.196344843163511 0.197312203384376 0.186232790144824 0.192759662399126 0.191157684192477 0.193832075754307 3 3 - 19190652 19190995 19190847.909 19190245 19192168 - gene protein_coding_gene FALSE TRUE AT3G51700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51690.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285) -0.099484896981685 -1.10070916702279 0.294777095100342 1 -0.0306930466827093 2.95713640466677 -0.099484896981685 0.0660330655782583
AFFX-TrpnX-M_at 0.94559985258870 0.584523519704841 0.98897357493451 0.962483856277348 0.814093721040136 0.976772233150018 0.596317520116104 0.94111699761107 0.847575240965044 0.731112213902664 1.23435036534630 0.887097885880442 0.931299363679468 0.819459829634045 0.882318575844358 0.6667956558334 0.883191677485421 0.738745753953922 0.921330777979802 0.134555450554996 0.132111311942456 0.130775823026374 0.131212847921726 0.128322694279613 0.130759368213913 0.128719699914628 0.131169845097461 0.134523351170667 0.132565236740575 0.129861276351608 0.132444472515066 0.127697447241779 0.129808026987785 0.128738560968293 0.131758938668534 0.128721079496818 0.135287902082754 0.128635901975907 NA NA NA NA NA FALSE FALSE 0.107879675676662 1.10050746866203 0.294861110114075 1 -0.0308937413950343 1.70810855913101 0.107879675676662 0.0909860797429523
AT2G43700_at 2.43553638752909 2.29469503001859 2.85485267413228 2.51555403173243 2.83340844084514 2.32688162880654 2.65256800958135 2.16882451035991 2.80085122604026 2.6421482603111 2.77846396991963 2.37562105938156 2.37738350103232 2.61040216438483 2.66790957648961 3.01394797708636 2.79889084357399 3.05140854946279 2.65325875602092 0.208383531417993 0.210200436965291 0.208477082092287 0.217514694812013 0.216914054122173 0.2115488575632 0.216582025758001 0.209349563867291 0.225873295553348 0.214983426035073 0.216268737090945 0.212102561570293 0.219041808139242 0.222879413246143 0.209136642546469 0.207682403483511 0.211019355478583 0.215784014983009 0.211648350057549 2 2 + 18124985 18125410 18125169.273 18123567 18125921 + gene protein_coding_gene FALSE TRUE AT2G43700.1 lectin protein kinase family protein similar to ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT3G59700.1); similar to receptor lectin kinase 3 (lecRK3) [Arabidopsis thaliana] (TAIR:AT3G59740.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G43690.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.127634458607912 1.10043162380039 0.29489270711522 1 -0.0309692013965305 5.21429319043757 0.127634458607912 0.136870490530137
AT3G25160_at 0.817675737128176 0.783706827687975 0.643982342287712 0.894196003524686 1.03450278317528 0.868374947365028 0.67552645737059 0.916540392678427 0.482029436392248 1.23869962632824 0.754753085104801 0.66722081477464 0.889489422905249 1.01524459705681 0.481139249996873 0.563304370379581 0.310068324634323 0.388023641234279 0.964080001111445 0.255398584493231 0.259574263483915 0.271807865266706 0.261788572199460 0.250406227281565 0.256842998796161 0.256869683219494 0.263650531605356 0.257027242818622 0.265333869009077 0.253911555787 0.255534132347482 0.258413525090093 0.257273874230556 0.25807809878628 0.250406227281565 0.255540206856618 0.264314646685036 0.262283010813811 3 0|3 /|- 9160501 9161441 9160959 9160175 9162074 - gene protein_coding_gene FALSE TRUE AT3G25160.1 ER lumen protein retaining receptor family protein similar to ER lumen protein retaining receptor family protein [Arabidopsis thaliana] (TAIR:AT4G38790.1); similar to ER lumen retaining receptor family-like protein [Solanum tuberosum] (GB:ABB02637.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) -0.0996896254889705 -1.10012498407239 0.29502047977129 1 -0.0312742435865113 1.59360908283797 -0.0996896254889705 0.0669001079443722
AT3G06180_at 3.60600016584338 3.92785510510193 3.76504968735528 3.67472847472597 3.3804874111315 4.08660847105726 3.56591019598655 3.94513702120256 4.58698016368093 4.55425238502352 4.66382347737922 3.97969177119272 4.30267526117088 4.39860517311183 4.11096934194329 4.52771882617767 3.88984335670486 4.46171532415988 4.43539811821318 0.191940003574251 0.195009026167943 0.191257676197201 0.189800422112859 0.206351601154000 0.19395430255364 0.194491747342135 0.190585222057734 0.193421829141559 0.196533265732640 0.191424515475832 0.191354089829484 0.193838577631723 0.193307346038780 0.191619467715052 0.195094535303102 0.200892823853833 0.192557271596832 0.208007624928718 3 3|0 +|/ 1871994 1873534 1872362.3 1871694 1873758 + gene protein_coding_gene FALSE TRUE AT3G06180.1 structural constituent of ribosome similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G19020.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV31269.1); similar to Os05g0393200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055454.1); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.134085175062634 -1.09961938994124 0.295231246560470 1 -0.0317770581387768 8.15268400261018 -0.134085175062634 0.150285641965659
AT1G01650_at 8.50196358283734 8.53391945234566 8.61210562786411 8.32247684742273 8.59221909081452 8.2078901008036 7.64664996178241 8.0022202168814 8.37251992948178 8.10566639352884 8.06441685748112 8.05549778138655 8.21958972817127 8.11645209436337 7.96817624603491 8.38793847821811 7.99309099472178 8.22262292845866 8.01806934849976 0.119236167557907 0.118573394335990 0.121313103708745 0.117273193541258 0.125192968394061 0.128823013296737 0.123313832619872 0.121259961976658 0.114783438049353 0.114842694605320 0.127497749652700 0.117894526915502 0.114783438049353 0.119517305098531 0.117989297797505 0.118109812494612 0.128621640486914 0.124689425078081 0.117353043591168 1 1|0 -|/ 233387 234944 234289.167 232841 237817 - gene protein_coding_gene FALSE TRUE AT1G01650.1|AT1G01650.2 peptidase similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 [Medicago truncatula] (GB:ABE91379.1); similar to Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 [Medicago truncatula] (GB:ABD32820.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369)|similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.112769597349440 1.09953125651472 0.295267998489302 1 -0.0318646884920841 16.4493764579813 0.112769597349440 0.103694982270904
AT3G18980_at 7.03838167350898 7.5221624180813 6.56370661241094 6.1747271213309 7.66780369630833 7.17351295279497 8.31126143602635 7.70661992288495 6.63791222979989 6.89365616206164 7.74021719231011 7.9796051653258 7.15814310769761 7.39412156404161 7.85962249900538 7.78976951801001 6.91508197947252 6.86787038847081 7.48168712312843 0.235192781653795 0.228820178739959 0.250227815647590 0.241184853565259 0.242657194395558 0.24944139340929 0.228820178739959 0.235915172393442 0.248429689201177 0.229858317107449 0.231802580037460 0.229289126700738 0.245234366982394 0.237566875799734 0.228820178739959 0.232207060830791 0.242393157577185 0.2434777881228 0.240116892048027 3 3 + 6547199 6547712 6547398 6546469 6548068 + gene protein_coding_gene FALSE TRUE AT3G18980.1|AT3G18980.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G18910.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.145516672559515 -1.09927818474098 0.295373549706690 1 -0.0321162850993885 14.5035081950625 -0.145516672559515 0.172644345148567
AT4G08290_at 7.4961571738227 8.04316946149776 8.78705605552223 9.0989073798733 8.81929459181347 8.10758715272501 9.88662917696268 9.78889571307425 7.81852336152224 8.33716554222696 8.15351186900639 7.41200213723133 8.20031705000771 7.94084929519643 6.27021734326275 7.59246728497184 8.57012433668326 7.76454953250542 7.60690953567449 0.195905783765923 0.185844539163735 0.189832164033026 0.192156819130171 0.190100442586467 0.204548194418334 0.197962762927057 0.190081778307815 0.209581127335593 0.188607868555870 0.191402715279608 0.197056816387794 0.192274968487008 0.194508557807333 0.200967740404868 0.188133450792576 0.194581570081062 0.201066185491913 0.191081308862012 4 4 + 5240009 5240813 5240357.182 5238903 5241028 + gene protein_coding_gene FALSE TRUE AT4G08290.1|AT4G08290.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G39510.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to nodulin MtN21 family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47055.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.141681438361132 -1.09924732597658 0.295386422259435 1 -0.0321469608804147 16.5828975894528 -0.141681438361132 0.165315036229142
AT3G62640_at 1.23304841463567 1.45563421108371 1.20430326241493 1.22676858309762 0.693514543296941 1.25593692009778 0.753929522281461 1.48904673753388 1.53556114992532 1.6990323129622 1.23419945278425 1.50914241999432 1.31272942720997 1.20659272457006 1.33590903757490 1.19211347148225 1.46838986339859 1.36261487588024 1.18344687315187 0.191047559757829 0.193467893016172 0.199258391541095 0.193637650091787 0.192928345605614 0.197828213122327 0.192220972986121 0.193418234925546 0.194765278363647 0.200213003544675 0.190735961441367 0.198639898587977 0.205582455032159 0.192482764967685 0.191180197345026 0.192986366346175 0.195290191926516 0.192085898646506 0.19749945398217 3 3 - 23177559 23177788 23177680 23177265 23177876 - gene protein_coding_gene FALSE TRUE AT3G62640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G47480.1); similar to hypothetical protein MtrDRAFT_AC145329g26v1 [Medicago truncatula] (GB:ABE91000.1) -0.141376298529084 -1.09898946473875 0.295494004339594 1 -0.0324032666794545 2.56421853486773 -0.141376298529084 0.164789969238437
AT1G16040_at 6.10983276441815 6.31480643782922 6.438906777046 6.33600542640619 6.62431897632565 5.85428187017648 6.24953301530972 5.20599896521639 4.81503276842856 4.5102760343169 4.57969699024091 4.61770588759459 4.83240405545008 4.87313300373903 4.25158209693941 4.8633101781175 4.97805792353506 4.69047206830369 4.78080385454875 0.191374089319476 0.189630185512626 0.197477057117482 0.194215550657902 0.186429425320953 0.191609671603873 0.19090476669074 0.193019719941185 0.198452620515199 0.188616653865488 0.189777102879751 0.185889435325205 0.183706210268142 0.187772829922579 0.186772807589700 0.183706210268142 0.195782637674606 0.192724532451625 0.186413992990277 1 1 + 5504766 5506341 5505264.2 5504729 5506605 + gene protein_coding_gene FALSE TRUE AT1G16040.1 similar to phosphatidylinositol glycan synthesis class F protein [Oryza sativa (japonica cultivar-group)] (GB:ABH07430.1); similar to Os03g0129000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048844.1); contains InterPro domain Phospho-ethanolamine N-methyltransferase; (InterPro:IPR009580) 0.176046594926919 1.09896818855880 0.295502882295843 1 -0.0324244124139184 10.8481269430517 0.176046594926919 0.227915249251103
AT4G19470_at 1.38753191940869 1.54182999020770 1.46376127591407 1.72479353050610 1.15384779086503 1.47435351577748 1.37620560884742 1.40850401903734 1.33387719229867 1.33666398035413 1.81742740175835 1.48579948265559 1.36169565072903 1.83370947440459 1.50484274345486 1.33862030044101 1.56975092937468 1.43191480714359 1.41968818759794 0.184377804742992 0.182859045102437 0.179944244792225 0.185769281515889 0.182927611345020 0.183430975069472 0.191102677385131 0.184706988975806 0.181507923221116 0.190770965123513 0.183496871255192 0.190458329105254 0.184017283600027 0.182660066462022 0.187845123584182 0.191737810788161 0.182768285547712 0.180730585945711 0.188570652325130 4 4 - 10613008 10613552 10613247.636 10613004 10614350 - gene protein_coding_gene FALSE TRUE AT4G19470.1 disease resistance protein-related similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G12010.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81427.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.102615727942674 1.09884823544487 0.295552939201013 1 -0.0325436240807676 2.89454339906821 0.102615727942674 0.0765584209000048
AT1G44446_at 10.9311952797553 10.9797521053587 10.9801796889177 10.9578121633700 11.2225040131299 11.0936543715071 12.0674609498545 11.7513045506158 11.5502738224625 11.5292769045989 11.8681212156052 11.9379822885702 11.6043528029210 11.4314085858790 11.7162749490395 11.8132488876610 11.5511700878054 11.565172742657 11.4568281323564 0.0802120641534025 0.079022514001966 0.078924026496421 0.0778004343809853 0.0769756257036071 0.0790776058896917 0.0780742448560082 0.0808236094811042 0.0840336410358327 0.0791902851122351 0.0797391952708338 0.0784280069531808 0.0773972683590347 0.0796918061430143 0.0813241989939252 0.0776424528654852 0.0803960527655177 0.0797001070829874 0.0806094387183808 1 1|0 -|/ 16851107 16851809 16851527.2 16850799 16853664 - gene protein_coding_gene FALSE TRUE AT1G44446.1|AT1G44446.2|AT1G44446.3 CH1 (CHLORINA 1); chlorophyll a oxygenase Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22. Identical to Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) (AtCAO) (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to LLS1 protein [Oryza sativa] (GB:AAG03051.1); similar to chlorophyll synthase [Phyllostachys pubescens] (GB:ABC02752.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806)|Identical to Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) (AtCAO) (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to LLS1 protein [Oryza sativa] (GB:AAG03051.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP55073.2); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806)|Identical to Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) (AtCAO) (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to LLS1 protein [Oryza sativa] (GB:AAG03051.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP55073.2); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.097525251810117 -1.09858399619712 0.295663230154333 1 -0.0328061940243194 22.8470292560586 -0.097525251810117 0.0598016352034203
AT4G34270_at 6.93801651136625 6.99275340748716 6.83168240607929 7.10506877440279 7.15099286355282 7.2248197685108 6.63241599392302 6.72203339842298 6.52077385668295 6.39155869988353 6.19315016671604 5.74307054911682 6.09573050729532 6.10415801064383 6.11482368899187 5.94681606202287 6.08124436654155 6.01725443709792 6.54258903051326 0.195887376621253 0.199558186972732 0.196869187285792 0.195024993840839 0.20262684128446 0.201239099728984 0.197799953976738 0.202365629366877 0.200248019320425 0.190613358684890 0.195899020115937 0.197189128843881 0.190894640887495 0.196684824482780 0.203420947482468 0.196246371193700 0.19933644756036 0.198242897072359 0.194073822946656 4 4|0 -|/ 16404186 16405434 16404880.7 16403848 16406244 - gene protein_coding_gene FALSE TRUE AT4G34270.1 TIP41-like family protein similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54365.1); similar to Os03g0760600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051346.1); contains InterPro domain TIP41-like protein; (InterPro:IPR007303) -0.0955533817350311 -1.09821865530563 0.295815771813881 1 -0.0331691453242182 13.2107253084247 -0.0955533817350311 0.0522664981073323
AT3G16610_at 0.991277658283437 0.981504617612121 1.11224893647727 1.08347521750031 0.867889616576427 1.07267367564788 1.16431482979332 0.637960686314346 0.935397227703821 0.93823303929458 1.68026227124050 0.566913554366694 1.11677665067077 1.29637649612546 1.13173351514865 0.938873239800377 1.21756549309344 0.872977264055355 1.04388928792063 0.206074097830814 0.209718697251252 0.205546491847955 0.209121824068097 0.207270277072873 0.21070765506241 0.207635239658468 0.206093701680905 0.214707854497833 0.208287825740011 0.210717622462587 0.206524213346915 0.211481001737027 0.208519990556434 0.207569117541309 0.217167599514148 0.21180383327131 0.215471548862813 0.208262475568574 3 3 - 5656383 5656841 5656610.273 5656377 5658341 - gene protein_coding_gene FALSE TRUE AT3G16610.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to putative vegetative storage protein [Sorghum bicolor] (GB:AAL73981.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.110242852902989 1.09760916041212 0.296070389610749 1 -0.0337744428714044 2.02651381921014 0.110242852902989 0.097880524748319
AT2G43840_at 2.46494928928371 1.74777758914470 1.98383721951668 1.83208554341483 1.98219761806118 2.12069951112962 1.95260473044636 1.97920733204951 2.32466177172836 2.02218044665748 2.22817920877443 2.06006401352186 1.82208900092263 1.80998704086177 2.06663263068012 1.63932813636294 2.16150782772481 2.44046380200647 2.31164081730253 0.161032656615871 0.159033891863947 0.169909450812981 0.166607023667784 0.162794669900893 0.164517406091716 0.168513175656943 0.158445833705867 0.164033346667159 0.160310146712318 0.176237681213575 0.159948921015234 0.163800448667004 0.158427279794927 0.159823626132576 0.162966177389073 0.162601709056308 0.163245357811817 0.158813101930762 2 2 + 18165644 18166161 18165844.727 18164715 18166308 + gene protein_coding_gene FALSE TRUE AT2G43840.1|AT2G43840.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2), UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT2G43820.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.123696324911536 -1.09758521402243 0.296080396685919 1 -0.0337982189688009 4.13193275554899 -0.123696324911536 0.129184384053390
AT3G45690_at 0.814425293872769 0.88532484668238 0.895768457518259 0.826567492441267 0.624330201883671 0.749242641670935 0.96836427149587 0.990073414354008 1.38596329511119 1.37330569140134 1.22940304075693 0.944194703061317 1.24327564977688 1.50901144663084 1.3863935180219 1.08458644396627 0.96308812797351 1.45498832545561 1.04471184632311 0.201912437115482 0.204288176136251 0.211450914326312 0.206950281405978 0.20755940753111 0.206316529602889 0.207503684015393 0.206444514748972 0.215609115450431 0.211978588089407 0.201232404992884 0.201668249550834 0.207413917780437 0.209328686335792 0.204797378383584 0.201232404992884 0.202640464850981 0.218595984270662 0.216590824346137 3 3 + 16788453 16789035 16788678.636 16787253 16789135 + gene protein_coding_gene FALSE TRUE AT3G45690.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45680.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45700.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45710.1); similar to Major Facilitator Superfamily protein [Solanum demissum] (GB:AAT39312.2); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.0908478561062659 -1.09757418237898 0.296085006840935 1 -0.0338091720248974 2.09169271144021 -0.0908478561062659 0.0278450948288429
AT3G49820_at 1.19545177721528 0.497658286601756 1.06966400370545 0.977942708473355 0.847088320297823 0.432496844568944 0.814883189783132 0.503494800736575 0.61750878199793 0.703050067086854 1.24101751900971 0.886494003237337 0.771604704479258 1.06961138946433 1.19240265592595 0.674735444553899 0.740625750692022 0.535566648937065 0.777459004582081 0.196955488218979 0.195049327122999 0.197693755883133 0.194527815511280 0.193960223538813 0.199989906645650 0.204349726031982 0.193277317246887 0.199921881351672 0.196720227046359 0.192098395386888 0.203623907785316 0.192441237945728 0.198155657283226 0.198784182197982 0.191760368448796 0.194947006960152 0.206981715968100 0.196954619724525 3 3 + 18492274 18492505 18492391.364 18492222 18492707 + gene protein_coding_gene FALSE TRUE AT3G49820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65925.1) 0.134296967829515 1.09729788003116 0.296200492273786 1 -0.0340834778661024 1.58650826596932 0.134296967829515 0.151279609527701
AT1G31010_at 3.11970630449887 3.4484047388216 3.80262524776423 3.55620702010144 2.95743366036855 3.31811851321420 3.26624925506066 2.76082666015766 2.28378229392636 2.46979830240165 2.08939098904219 2.16589753738049 2.36165433475791 1.94740540264724 2.15674960302464 2.36982670005695 2.57420176547319 2.30827573165897 2.02481869644165 0.240058281951772 0.243057275806304 0.241001827589964 0.246128465819419 0.230555307760535 0.244162644400918 0.231365369373524 0.237984417833460 0.237085954431158 0.232370928612991 0.233487737094553 0.230555307760535 0.231146343412685 0.230555307760535 0.234944320113167 0.232971460092327 0.232661859295165 0.240989542601090 0.239122245604303 1 1|0 -|/ 11054966 11055882 11055412.625 11054718 11056902 - gene protein_coding_gene FALSE TRUE AT1G31010.1 single-stranded DNA binding similar to PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9), single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G20010.1); similar to mitochondrial SBP40 [Solanum tuberosum] (GB:AAX34397.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Single-stranded DNA binding; (InterPro:IPR010913); contains InterPro domain Single-strand binding protein/Primosomal replication protein n; (InterPro:IPR000424) 0.123504098904694 1.09728054572658 0.296207738599349 1 -0.0341006851095392 5.53176726946261 0.123504098904694 0.128842674078465
AT4G18370_at 8.46973839902079 8.58510776149736 8.03845231937652 7.86621146264545 8.66333874694309 8.15442969170684 8.93849349993548 8.74253517826961 8.67015645947858 8.80550079283304 8.84378344903274 9.28097805751266 8.72862455802565 9.06460308184465 9.28341991520524 9.42273694625874 8.85122144961024 9.02354361920881 8.86993214579688 0.131355299019369 0.125066053958363 0.136761399528473 0.130744867907024 0.127609674024978 0.134809315952517 0.136117887192267 0.133887515875396 0.131783276397307 0.128940761034999 0.135897965422754 0.137429162722378 0.124987934870694 0.130180197068814 0.130619197953576 0.132430353812270 0.139587093115316 0.129710678127305 0.131581426815846 4 4 + 10149707 10151012 10150617.636 10149140 10151229 + gene protein_coding_gene FALSE TRUE AT4G18370.1 HHOA (DEGP PROTEASE 5); serine-type peptidase/ trypsin Encodes a putative protease HhoA precursor (HhoA). Identical to Protease Do-like 5, chloroplast precursor (EC 3.4.21.-) (DEGP5) [Arabidopsis Thaliana] (GB:Q9SEL7;GB:O49507;GB:Q93ZW5); similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to Protease Do-like 5, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99861.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.111429951314161 -1.09724820626245 0.296221257951296 1 -0.0341327869538075 17.3544018910695 -0.111429951314161 0.100961504728937
AT2G37040_at 5.5977155313462 5.74115983757739 5.66164689648855 6.07306939144241 5.46984845373935 5.47115755550317 6.34933378861338 6.5784660627651 6.52189378102922 6.59577983166494 7.1988119368507 8.23538245800819 7.03144792986486 7.42713143197864 7.49597590283252 7.43253216341654 6.81818119444639 6.95901378247298 7.03091897987817 0.179990578621907 0.182667512142955 0.180380052702526 0.170803963269060 0.1827964299935 0.178279368131965 0.182367651787095 0.181709988830077 0.181428567078170 0.177858890706206 0.174318355514046 0.171705201825131 0.177597473375275 0.179367867091248 0.186701652395345 0.173191598877773 0.177701911828071 0.175032521114771 0.177075287712824 2 2 - 15564683 15565206 15564967.273 15564455 15567442 - gene protein_coding_gene FALSE TRUE AT2G37040.1 PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G53260.1); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22053.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22055.1); similar to Phenylalanine ammonia-lyase (GB:P45730); contains InterPro domain Phenylalanine ammonia-lyase; (InterPro:IPR005922); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Phenylalanine/histidine ammonia-lyase; (InterPro:IPR001106) 0.105436919172132 1.09722225678819 0.296232106340858 1 -0.0341585452228009 12.8883032551051 0.105436919172132 0.0851928356151878
AT3G01910_at 10.2186613266603 10.1682508407291 10.2726330120459 10.2103481299879 9.9383934214999 9.95895565051355 10.1808551434157 10.3607091629721 10.2661555827627 10.3508068890421 10.1354323289059 10.1614056560000 10.1458542808710 10.2175027567888 10.1847287753139 10.296237730141 10.1781163992851 10.3283043623386 10.1401642515732 0.070966995302898 0.06971176660936 0.070910160522436 0.0719099485825142 0.06971176660936 0.0719621266460554 0.06971176660936 0.06971176660936 0.0750017840896221 0.0719011918318521 0.0719718239784883 0.0706468564958828 0.0734286519885775 0.0711586312613333 0.0789764629951406 0.0713971327663593 0.0725447271046956 0.0703265461376267 0.0715181863449049 3 3|0 -|/ 314965 316013 315543.1 314701 317438 - gene protein_coding_gene FALSE TRUE AT3G01910.1|AT3G01910.2|AT3G01910.3 SOX (SULFITE OXIDASE); sulfite oxidase|SOX (SULFITE OXIDASE) Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite. Identical to Sulfite oxidase (EC 1.8.3.1) (Moco-containing protein AtMCP) (At-SO) (AtSOX) (SOX) [Arabidopsis Thaliana] (GB:Q9S850;GB:Q9SNW2); similar to NIA1 (NITRATE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT1G77760.1); similar to sulfite oxidase-like [Solanum tuberosum] (GB:ABB86275.1); similar to sulfite oxidase [Codonopsis lanceolata] (GB:BAE48793.1); similar to Sulfite oxidase, putative [Brassica oleracea] (GB:ABD65019.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066)|Identical to Sulfite oxidase (EC 1.8.3.1) (Moco-containing protein AtMCP) (At-SO) (AtSOX) (SOX) [Arabidopsis Thaliana] (GB:Q9S850;GB:Q9SNW2); similar to NIA1 (NITRATE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT1G77760.1); similar to Sulfite oxidase, putative [Brassica oleracea] (GB:ABD65019.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066) -0.091732176593129 -1.09660094854080 0.296491940010159 1 -0.0347751326540648 20.3927625163105 -0.091732176593129 0.0342590969606241
AT1G06670_at 6.1934830488397 6.71335458606682 6.47401467811413 6.15305397240936 6.29161067602859 6.32311569544469 6.21914923332634 6.3313046006599 6.19071429249832 5.73271599407108 5.35754885012478 6.13106992936452 6.15909306725866 5.91044528732539 5.72063928713629 5.58218641386743 5.96823781527655 5.661409493425 6.0333766740691 0.201235048146128 0.205097269905242 0.204556241333387 0.217356701803136 0.214204505479859 0.209263367759366 0.214730817764556 0.202796905461248 0.212726368295699 0.206739751440492 0.201235048146128 0.213230462875216 0.212318180302381 0.217043868361582 0.205789138911775 0.208769373775812 0.212468872475554 0.203350673295989 0.201235048146128 1 1 + 2046756 2047252 2046975.727 2040432 2047611 + gene protein_coding_gene FALSE TRUE AT1G06670.1 NIH (NUCLEAR DEIH-BOXHELICASE) nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins similar to HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM), ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G30800.1); similar to Os01g0767700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044362.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL52525.1); similar to putative RNA helicase A (GB:AAB01660.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.114073831982248 -1.09640700903611 0.296573081967281 1 -0.034967542420969 12.2358513554538 -0.114073831982248 0.107635769383496
AT1G02370_at 3.11229638792949 2.66420313745261 2.76860436637046 3.01530286864509 2.65804979863120 2.92573465716794 2.54385542793824 2.98567059309139 2.61954913412492 2.2155914608388 2.3005118827545 2.50103248332897 2.17442523130529 2.28644504588712 2.52270221883384 2.08720345489402 2.13024665860479 2.20512356159073 2.77082282121529 0.194573492953527 0.196513780778671 0.194877429864575 0.196824526831881 0.197382620260779 0.202844749905143 0.198396470291706 0.197762918004410 0.203571536531424 0.193588505341274 0.196957078031501 0.194857602118173 0.200899268482851 0.216566019062993 0.196896179749474 0.198382303592207 0.198141868842390 0.201650925258023 0.199205492312852 1 1 + 475790 476314 476058.364 474500 476511 + gene protein_coding_gene FALSE TRUE AT1G02370.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G01990.1); similar to H0107B07.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66166.1); similar to Os01g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042820.1); similar to Os04g0320200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052458.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.121971642737844 -1.09602488597505 0.296733007312397 1 -0.0353465732137487 5.23985588259142 -0.121971642737844 0.125807709811742
AT2G41450_at 0.974122302009054 1.16275279766742 0.830807184079414 0.674787591429543 0.382275910798831 0.589719928792915 0.627748196176313 1.01716988531351 1.03631327821625 0.784239691640517 0.72814266094468 0.912342000622005 1.04488984969030 0.415778735136828 1.19411820640627 0.93124020845914 0.743625650929436 0.895394256097933 0.412373686382986 0.204210465560664 0.206180981088474 0.200684115810219 0.211567310723793 0.206472913235690 0.206435973803443 0.212248895051114 0.200684115810219 0.213110457159656 0.204774615507431 0.204419812223081 0.203670111939604 0.204217613504619 0.206145916572343 0.208220291142749 0.21658861509154 0.208910074857432 0.210740735797702 0.208460918207004 2 2|0 +|/ 17291225 17292127 17291592.25 17285268 17292165 + gene protein_coding_gene FALSE TRUE AT2G41450.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57200.1); similar to SDL-1 protein [Medicago truncatula] (GB:ABD33320.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.106084040446913 -1.09597722378755 0.296752959412218 1 -0.0353938424252671 1.58367314025791 -0.106084040446913 0.0873207579634254
AT1G27910_at 5.00860652034278 4.63190692117106 4.56327645055586 4.73183822074862 5.17571560126261 4.86174313449616 5.52949832588473 5.32855967916999 5.11387808013434 5.40478476629371 5.46159622842867 5.56754641715225 5.27534423606465 4.7887793285683 4.75708665170634 5.18984634244266 5.25156436732968 5.41747781554442 4.90443247103181 0.210073833480995 0.205954251400236 0.207411322168506 0.214561480627008 0.210369157708123 0.218001820847624 0.209053390261154 0.231633724728433 0.211895750255613 0.211170668668696 0.208956899560591 0.206008779470943 0.210514690316298 0.225021511067425 0.217684968414894 0.212653538576921 0.230296433535422 0.205926125094321 0.211180443583836 1 1 - 9720950 9721471 9721188.364 9720723 9724701 - gene protein_coding_gene FALSE TRUE AT1G27910.1 U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G24330.1); similar to Os01g0901000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045108.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.109438054479162 -1.09597666540626 0.296753193164998 1 -0.035394396193128 10.1562365796496 -0.109438054479162 0.096239354690025
AT3G24270_at 1.20588430130399 1.04697169930673 1.37135733058450 0.95858745015918 0.952916867963025 1.03980014711379 1.37390736035718 0.863805634425833 1.35230194368883 1.31112871959942 1.58715672548006 0.76008279780908 0.929973025229483 1.25524972532443 1.07639624486665 0.968303651748485 1.38911223538784 1.09766823672820 1.31985901972244 0.214321610763709 0.215328578718199 0.212866231367286 0.212866231367286 0.217347602757252 0.212866231367286 0.214114022569171 0.215054854880311 0.219554590723336 0.221322024341992 0.212866231367286 0.214710578072183 0.225594512349128 0.219302794128354 0.213790528077582 0.221227194173806 0.213470434886741 0.212866231367286 0.216730340420115 3 3 - 8796551 8797012 8796805.636 8796548 8797038 - gene protein_coding_gene FALSE TRUE AT3G24270.1 APUM25 (ARABIDOPSIS PUMILIO 25); RNA binding / binding contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.118373598620882 -1.09588490425139 0.296791608656906 1 -0.0354853961927508 2.33203187789778 -0.118373598620882 0.117802399422465
AT3G58450_at 1.75020093799246 1.82257356520561 1.90817760013438 1.81463312961124 1.84990649865698 1.73750653097747 1.76567469183808 1.83716331671115 2.15082851657069 2.6307514425198 2.06488048171955 2.08622087723873 2.11839212049058 1.99772786269759 1.93813981261066 2.01035103168479 2.22222967819296 2.18860860855586 2.10113025454703 0.224022022740387 0.221404648611344 0.222613954628573 0.224816538244957 0.225173712891229 0.224439466041409 0.227416589729202 0.221404648611344 0.233057728796762 0.2359561190266 0.227594576671429 0.226461339001720 0.222804522463610 0.221404648611344 0.225644434860133 0.224056178704889 0.221404648611344 0.221404648611344 0.223080970616692 3 3|0 +|/ 21633031 21633797 21633410.222 21632974 21634143 + gene protein_coding_gene FALSE TRUE AT3G58450.1|AT3G58450.2 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G11930.2); similar to putative stress-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87267.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016)|similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G11930.1); similar to putative stress-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87267.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) -0.0911325584110678 -1.09588127503816 0.296793128092644 1 -0.0354889951787937 3.99700730740493 -0.0911325584110678 0.0308274146455385
AT2G24530_at 3.16033242838402 3.97100729340309 2.82681244616856 3.21081230305066 4.42409978270303 4.15601352524728 3.86343462179232 3.49335932511544 2.71864609751675 2.54030934485547 3.06903788941143 2.76521539115513 3.09778897659798 3.3907022794303 3.18062182952047 3.23077381667289 2.68986660298042 2.60036472478774 2.97203209179389 0.213830430949833 0.225488838534694 0.218385782019153 0.225169067856253 0.214419147225039 0.225582925428558 0.214858585497479 0.218212807841761 0.219193714499907 0.227856249444360 0.216096652380434 0.212902439850733 0.216667874820468 0.217267407378404 0.212902439850733 0.213113173991162 0.220058575308536 0.230109514409558 0.221576350229628 2 2 + 10430355 10430857 10430586.273 10430142 10430900 + gene protein_coding_gene FALSE TRUE AT2G24530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31440.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAL87175.1); similar to Os04g0658100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054127.1); similar to OSIGBa0132E09-OSIGBa0108L24.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67788.1); contains InterPro domain Histone-fold; (InterPro:IPR009072) 0.145892512274753 1.09586579108181 0.296799610797679 1 -0.0355043500663481 6.51158844083717 0.145892512274753 0.174216769049441
AT4G24710_at 2.13808368692212 2.18053050743225 2.02949349896801 1.98524894386206 1.99189289781568 1.80636629718711 2.10108244525295 1.89347356562162 1.37221530139166 1.80006713748785 2.12617125809761 2.36421699015721 1.87047300157205 1.72855118758842 2.3822698538147 2.15698346333640 2.20794216897962 1.62149223526220 2.05645714866319 0.212247565131754 0.208077609708347 0.213671774773256 0.207945209048259 0.214421820935698 0.216985635358643 0.207338792567846 0.206987209222512 0.215527568045840 0.215710494022004 0.20890764810931 0.205266684363074 0.217143576959113 0.207672087634826 0.211752760873002 0.208716478460620 0.205848686996522 0.216185332646528 0.211036102021565 4 0|4 /|- 12745830 12746733 12746278.125 12745557 12749005 - gene protein_coding_gene FALSE TRUE AT4G24710.1 ATPase similar to CDC48B, ATPase [Arabidopsis thaliana] (TAIR:AT2G03670.1); similar to PREDICTED: similar to Thyroid hormone receptor interactor 13 isoform 1 [Strongylocentrotus purpuratus] (GB:XP_785120.1); similar to OSIGBa0116M22.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66942.1); similar to OSJNBa0044K18.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE05878.3); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0946535910772202 1.09582378348657 0.296817198762864 1 -0.0355460066429323 3.91585933823202 0.0946535910772202 0.0493375415983187
AT2G04740_at 5.3983794166012 5.53454046315992 5.45712433448837 5.42299682366407 5.8414562773601 5.5644535952527 5.18422884491308 5.41482947902904 4.96815602232314 4.87884384721424 4.00015897064035 4.24134633875912 4.51668242482951 4.51917090224002 4.08379063275871 4.24437617809308 5.32263276872708 4.50192060720342 4.60051460717277 0.269555743492867 0.261705920729726 0.272313403680207 0.264698001254930 0.271851260654042 0.261705920729726 0.274467125856365 0.261705920729726 0.269580674431202 0.270994131573999 0.264990377399822 0.261705920729726 0.269381768741016 0.261705920729726 0.265043771071852 0.262902824479862 0.261705920729726 0.262824888012304 0.261705920729726 2 2 + 1658936 1659534 1659198.3 1657118 1659686 + gene protein_coding_gene FALSE TRUE AT2G04740.1 ankyrin repeat family protein similar to MGC80260 protein [Xenopus laevis] (GB:AAH72172.1); similar to Os06g0318200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057501.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.0992825496157375 -1.09551173798252 0.296947872572049 1 -0.0358554054103352 10.0995501602135 -0.0992825496157375 0.0669369659051341
AT3G45430_at 2.27020071115584 2.53864953290532 2.06806769568188 2.17547622614955 1.71541967309882 1.96487547497561 2.58371615415577 2.58964832070946 2.11726659220887 2.47756193791352 3.33862636645856 3.55523096646622 2.68682148830571 3.17120467123504 3.57406984871447 3.03901064989667 2.39011700677497 3.09957765434486 2.58787385690927 0.202460489789286 0.202460489789286 0.214240047806131 0.212195232940259 0.205817080213997 0.208479732578335 0.214351728345068 0.206459882559555 0.205825069855993 0.202460489789286 0.202460489789286 0.209603849676642 0.206757657885381 0.208856830922426 0.213304780594087 0.205627012245848 0.204060084338959 0.227234188653482 0.207536594411399 3 3 - 16671807 16672265 16672002.364 16671744 16673585 - gene protein_coding_gene FALSE TRUE AT3G45430.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G60320.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G60300.3); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G45440.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.0990021451294389 1.09517134719653 0.297090466506291 1 -0.0361928301060094 4.98878995387159 0.0990021451294389 0.066093459417567
AT1G63170_at 6.35336449383922 6.41503885397256 6.15736672035754 5.99034573018575 6.78434672641733 5.78068350769647 7.11093484029948 6.52839514758943 6.13958825186961 6.16313911225681 6.27776014286457 6.8527413579727 6.42600586915081 6.45818849829849 6.60576832060006 6.11027951166514 5.94964992152904 6.29555449224957 6.51075059890978 0.218759964549007 0.207549385970007 0.227955252373057 0.222244214478339 0.207512113316542 0.222783221715885 0.205930889750615 0.221502587489114 0.233537586896315 0.216783682009034 0.212564787907281 0.208379685280075 0.220676357045629 0.218740087153283 0.219728029767928 0.205930889750615 0.232353068932999 0.225419898315240 0.218217675281847 1 1|0 +|/ 23429957 23430624 23430271.625 23429017 23430974 + gene protein_coding_gene FALSE TRUE AT1G63170.1 zinc finger (C3HC4-type RING finger) family protein Identical to Ubiquitin-protein ligase At1g63170 (EC 6.3.2.-) (RING finger protein At1g63170) [Arabidopsis Thaliana] (GB:Q8LDB8;GB:Q93Z65;GB:Q9CAM6); similar to protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G12760.1); similar to ring zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29468.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.161456734740833 -1.09500619569461 0.297159669363704 1 -0.0363565128347947 12.7116359201964 -0.161456734740833 0.203174731172367
AT1G69600_at 1.33908458501649 1.53556875639402 1.23108584032325 1.05736174594765 1.06251075706426 1.00054599514566 0.928538471607952 0.907587870087837 1.23912399951201 1.27994608783253 1.23478639655416 1.31630146770847 1.2091825341307 1.40604031412924 1.03681085708771 0.872472768292638 1.22084987609287 1.24772332454693 1.35431868218023 0.180587218924903 0.179450867165429 0.182782009751468 0.179411953072738 0.181979188920691 0.179712868096210 0.183622471741869 0.182184128007298 0.187371603129610 0.184537325753839 0.179915191247369 0.181041948729744 0.182088863770684 0.180202874570444 0.181389384501083 0.185810345724912 0.180820138150902 0.191278673745966 0.183020771167181 1 1 + 26186376 26186813 26186646.364 26186133 26186861 + gene protein_coding_gene FALSE TRUE AT1G69600.1 ATHB29/ZFHD1 (ZINC FINGER HOMEODOMAIN 1); DNA binding / transcription factor/ transcriptional activator Encodes ZFHD1, a member of the zinc finger homeodomain transcriptional factor family. Binds to the 62 bp promoter region of ERD1 (early responsive to dehydration stress 1). Expression of ZFHD1 is induced by drought, high salinity and abscisic acid. similar to ATHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60480.1); similar to Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation re (GB:ABE90495.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.0939637418400612 -1.09449209761483 0.297375168890962 1 -0.0368659146277901 2.37486076877810 -0.0939637418400612 0.0467774951151315
ATCG00480_at 14.1048760890002 14.3475293415218 14.3195661571131 14.3407821298373 14.0514095521584 14.0311893867306 14.4329572978638 14.3961355150800 14.9574077938616 15.0281981299675 15.4510258045795 15.4005850692605 15.2699668890442 15.1281108156215 15.3163442329863 15.2266529724096 14.9658448124943 15.1861621881539 14.7810782496596 0.0517307830701069 0.0518425213129412 0.0560194341020647 0.0536733966341245 0.0519907117391441 0.0584594970895926 0.0530705861284804 0.055823332662053 0.0590124150277475 0.0531144775854226 0.0511058153088694 0.0512906894532508 0.0549975989652548 0.0567488102963054 0.0559296301694959 0.0511058153088694 0.055599320709564 0.0555713177674024 0.0529859545585786 C C - 52689 53180 52983.182 52660 54156 - gene protein_coding_gene FALSE TRUE ATCG00480.1 chloroplast-encoded gene for beta subunit of ATP synthase Identical to ATP synthase subunit beta (EC 3.6.3.14) (ATPase subunit beta) (ATP synthase F1 sector subunit beta) (atpB) [Arabidopsis Thaliana] (GB:P19366); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08670.1); similar to ATP synthase beta chain 2, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08690.1); similar to ATP synthase beta chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G08680.1); similar to ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) (GB:Q9MS49); similar to ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) (GB:Q9MTG8); similar to ATP synthase beta subunit [Cleome hassleriana] (GB:AAK72746.1); contains InterPro domain ATPase, F1 complex, beta subunit; (InterPro:IPR005722); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; (InterPro:IPR004100); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding; (InterPro:IPR000194); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793); contains InterPro domain AAA ATPase; (InterPro:IPR003593) 0.0931103929162873 1.09437914944304 0.297422530466427 1 -0.0369778058316442 29.3357130116123 0.0931103929162873 0.0427747643368799
AT4G00450_at 7.14951273695835 7.28566241239622 6.97886085234999 7.22217240438984 7.4946534845268 7.38890039565794 5.97379262659508 7.04637616457017 6.75081523859315 6.60110131645816 6.75732642457824 6.5348732555124 6.98901930018809 6.62437116418414 6.07950116083645 6.83131259766122 6.84736455865991 6.2405171773616 6.77582474678427 0.240107872769806 0.230970457458069 0.237459625943586 0.236483659351718 0.224672010338596 0.23305779925349 0.223754231363511 0.229144561637288 0.229197292577773 0.231441697765149 0.227944433411732 0.222751027929586 0.224000774078619 0.232009477322083 0.233425120720591 0.222751027929586 0.227222609500858 0.228809399512263 0.225560315811402 4 4 + 209928 210578 210337.5 203471 211003 + gene protein_coding_gene FALSE TRUE AT4G00450.1 CRP (CRYPTIC PRECOCIOUS) A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype. similar to 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula] (GB:ABD32834.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK43491.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP54923.2) 0.15554970168104 1.09416436021836 0.297512612054414 1 -0.0371905600226664 13.7286327874229 0.15554970168104 0.192655501877507
AT1G07250_at 9.17735034761835 9.6408218820486 9.27689871011825 9.48925101990365 9.6788865991388 9.53832315578853 9.88473967663579 10.1674992490174 9.8333895475897 9.87443631048202 9.94564923635353 9.56075672871183 9.98573040759467 9.94700499116434 9.44787253447155 10.1532316538361 9.70358161920283 9.81895878213828 9.76141616955124 0.11028010572213 0.105771886397098 0.108105526308110 0.103722116826514 0.105087187376822 0.111097993383849 0.106430115013333 0.108644155890044 0.113516505540758 0.110101492746448 0.100735070639784 0.100735070639784 0.100735070639784 0.106015335223955 0.106009984328414 0.103202340359222 0.110794138412220 0.103648453209276 0.105488167801796 1 1 + 2226871 2227347 2227108.091 2225899 2227565 + gene protein_coding_gene FALSE TRUE AT1G07250.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G07260.1); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 (GB:2ACV); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose (GB:2ACW); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.112247674641455 -1.09411868522555 0.297531770616333 1 -0.0372357980331658 19.4284357900629 -0.112247674641455 0.103776601470467
AT2G35320_at 6.44059227646282 6.95233700732964 6.25342161875238 6.14350256078536 6.83267883381813 6.32721625244095 5.81534166120371 6.23677336375064 5.60220093866372 6.28302449455537 5.82022830487438 6.13044633945537 5.76029865847885 5.91423384402075 5.97409876681259 6.15493127433106 5.2281127716276 5.73388805443356 6.50356546066489 0.245627735490702 0.243874646730418 0.240944369100930 0.253732418002546 0.238845837218787 0.259177238645422 0.238845837218787 0.245889799536976 0.27334837915402 0.243111846745707 0.245919524971497 0.243372617557045 0.24950727344559 0.258124916579138 0.249836390140770 0.238845837218787 0.254149094972779 0.253863259214478 0.238845837218787 2 2 - 14874188 14875021 14874525.636 14873911 14875939 - gene protein_coding_gene FALSE TRUE AT2G35320.1 ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG); protein tyrosine phosphatase, metal-dependent homologue of the animal Eys Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent. similar to OSEYA1 [Oryza sativa] (GB:BAA85161.1); similar to Os06g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056580.1); contains InterPro domain EYA; (InterPro:IPR006545) -0.131061736805607 -1.0940735782014 0.297550691865817 1 -0.0372804720521855 12.3597963050091 -0.131061736805607 0.145516435341451
AT1G51810_at 0.994989001229154 1.19127996661032 1.43384774417588 1.4143360517586 0.86387393552549 1.26431605997414 1.02342642382117 1.05647983570972 1.91493215218840 1.82576157454388 1.65828733039447 1.09925998412388 1.16840711796400 1.71698377211186 0.942626291499078 1.15204151139299 1.24464901016181 1.87382086132347 1.47768171026388 0.170962053100715 0.169469333362001 0.169469333362001 0.173433010271783 0.170055999103093 0.169469333362001 0.170085304558499 0.171549639099900 0.171748410435618 0.170029349697990 0.183805351798670 0.171072310423701 0.180805532003852 0.177028860310746 0.180238282384596 0.174253967615652 0.177709570191944 0.186006723041286 0.176460762624422 1 1 - 19230793 19231540 19231049.2 19230788 19236028 - gene protein_coding_gene FALSE TRUE AT1G51810.1 kinase similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.102449676555671 -1.09386801018415 0.297636934053402 1 -0.0374840483856118 2.70355260928564 -0.102449676555671 0.0774614929784564
AT4G23493_at 1.94132228828678 1.90779167509378 1.63528359911464 2.09603628686787 1.94336803013044 2.17465714694176 2.06929922567538 1.93651157563992 1.34678438080496 2.09516037924242 1.56340991158284 1.49457675123053 2.44960779996387 1.64961587791557 1.30112118623747 1.89968322986433 2.21652675073998 1.62433246517328 2.52466315340804 0.224536141442968 0.225715267955536 0.224714637391401 0.230829584092921 0.221004603026681 0.232524275920386 0.226180959026105 0.225020943394362 0.246637099277458 0.227131293115123 0.224632492449503 0.231555681606289 0.240607377685618 0.221651606920036 0.221004603026681 0.221954080485367 0.231924004912211 0.235851690448396 0.225395131930057 4 4 - 12256340 12256675 12256467.182 12256190 12257049 - gene protein_coding_gene FALSE TRUE AT4G23493.1 unknown protein -0.107702491653471 -1.09362747319251 0.297737871038983 1 -0.0377222167115109 3.84489800400563 -0.107702491653471 0.0923120613815127
AT1G17545_at 0.872094257344482 0.89441953660547 0.999696798772264 1.11713582357756 1.07118300575034 1.03772565807235 1.24971772656781 0.951137254291522 1.37280006763371 1.23195834765521 1.28597538634546 0.92050748088609 1.01032009741089 0.98113539032625 1.00499507069629 1.28628947609722 1.02684967980398 0.948985741038419 1.33926126396828 0.206462107714058 0.206879180508724 0.205706061913287 0.203504584399773 0.206205352939704 0.206227787042782 0.203182979182229 0.201009173379012 0.216341077992712 0.208393097433730 0.209748235454975 0.207343476499517 0.204917250885216 0.201009173379012 0.204418269222849 0.203922869474798 0.213663206769532 0.212990286819818 0.204476880478859 1 1 + 6033323 6033848 6033602 6033102 6033901 + gene protein_coding_gene FALSE TRUE AT1G17545.1 protein phosphatase 2C-related / PP2C-related similar to HAB2 (Homology to ABI2), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G17550.1); similar to Os05g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056498.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:AAT39223.1); similar to Os01g0583100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043415.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.0959739041263419 -1.09250396424247 0.298209677215459 1 -0.0388341165637524 2.21054151599505 -0.0959739041263419 0.0559585133846921
AT2G01960_at 1.47602509735231 1.23089963970006 1.24119619930863 1.34522054326236 0.911742224316282 1.17070493772838 1.05540356285607 1.01731243231574 0.528102912586122 0.741299903040402 0.897816095004505 0.761809986527634 1.13205524256006 0.69011447854702 0.51160762245476 0.6920528503371 1.24491988431571 1.16683342961104 0.719137006406813 0.226733788344748 0.225267779281566 0.222501994885723 0.226845200771160 0.228253012404375 0.222371653642962 0.226499705856206 0.225644573197000 0.237690680936443 0.226019763622160 0.228747569910342 0.224452927224123 0.233178855888501 0.222371653642962 0.226596483217549 0.228472692071053 0.238933201878929 0.233865823804695 0.247805247818001 2 2 + 450490 451624 450917.1 450378 451909 + gene protein_coding_gene FALSE TRUE AT2G01960.1 TET14 (TETRASPANIN14) Member of TETRASPANIN family similar to TET15 (TETRASPANIN15) [Arabidopsis thaliana] (TAIR:AT5G57810.1) 0.0983051922115746 1.09221324337985 0.298331855339388 1 -0.039121687053137 1.95606198261207 0.0983051922115746 0.0646169001977955
AT3G53520_at 8.02106241314586 8.18939205886928 7.45186530431634 7.56271722135267 7.68853247862704 7.74958240618763 7.91269326706308 8.00291149204324 6.53022129016012 6.78713646502072 6.8754071427365 7.33007527878249 7.08631002159758 7.03393426913851 6.94410905904218 6.93489805536308 6.68906194092595 6.61059498814154 6.79544112346312 0.224237377374045 0.222230716823486 0.23559049904816 0.230832037025810 0.225627742811573 0.233527876554015 0.238124756616359 0.235951643416141 0.259411039971106 0.235102778099692 0.225714515442461 0.227529898588698 0.22780508534599 0.23592710175553 0.231216279771740 0.233237726489839 0.237859581648804 0.229062118297367 0.227915566471056 3 3|0 +|/ 19853566 19854984 19854362.7 19852462 19855286 + gene protein_coding_gene FALSE TRUE AT3G53520.1|AT3G53520.2|AT3G53520.3 UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); catalytic|UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1) Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. similar to UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2), catalytic/ dTDP-glucose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT3G62830.1); similar to putative UDP-glucuronate decarboxylase 4 [Nicotiana tabacum] (GB:AAT40110.1); similar to UDP-glucuronic acid decarboxylase 1 [Populus tomentosa] (GB:AAX37334.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)|similar to UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2), catalytic/ dTDP-glucose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT3G62830.1); similar to UDP-glucuronic acid decarboxylase 1 [Populus tomentosa] (GB:AAX37334.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0922789517873936 -1.09177517369195 0.298516030280289 1 -0.039554895918117 14.6435021488743 -0.0922789517873936 0.0396478163644405
AT3G56750_at 5.30341822765395 5.16760635994032 4.55725397208418 4.74918291899547 5.77211801847237 5.067224837715 5.50338109624213 5.07677885195362 4.45498300383605 4.82582167343325 4.64161914937638 4.71346015441628 4.78004916897768 4.43365771067154 4.86722261468842 4.74498266305088 4.90870274759771 4.40987141013372 4.89518278038074 0.210056240700621 0.210859104852984 0.213449877832124 0.210943783712422 0.212085402315177 0.219343403285471 0.210675481997002 0.208776239339076 0.216263380127456 0.203262728164265 0.203253845499378 0.208288838711109 0.203253845499378 0.207655541468727 0.213928431809455 0.203253845499378 0.213046323624057 0.203715050152662 0.214264812739454 3 0|3 /|- 21029380 21030126 21029791.778 21029068 21031410 - gene protein_coding_gene FALSE TRUE AT3G56750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41150.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96132.1) -0.132117323658343 -1.09160315258080 0.298588375764593 1 -0.0397249708940197 9.85600796283917 -0.132117323658343 0.148277196200496
AT1G18670_at 3.82995331170891 4.53698253556284 3.93671540351772 4.2423207442919 4.09059007210436 3.87269779063129 5.22679694159031 5.23987222814755 4.96450168391395 4.36988346830199 5.83478556081212 5.50213429474893 5.543488505124 5.65677322146459 5.36482361988389 4.76790749986236 4.81329170597299 4.39439863752515 5.11562550417882 0.298535965854451 0.299893517372368 0.319354899167218 0.301253875478324 0.292610397403923 0.309086849092839 0.300595202100905 0.300090637248856 0.314587039096823 0.304036206409254 0.292610397403923 0.294366366117656 0.298754479557459 0.298388526822098 0.296480493851585 0.300543747675579 0.316175810046546 0.313933067436111 0.292610397403923 1 1|0 -|/ 6428033 6428625 6428274.625 6426890 6430688 - gene protein_coding_gene FALSE TRUE AT1G18670.1 IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); kinase Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT1G74330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79143.1); similar to Os07g0596600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060172.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.127395044870044 -1.09151280171785 0.298626379229162 1 -0.0398142911394626 9.3976764281806 -0.127395044870044 0.138544602165756
AT3G14310_at 10.9682281942069 11.4028086013371 9.39438821997216 9.20063210022541 10.6116619139727 10.2361390782245 8.80861929705463 9.0852918099455 10.9199659169891 10.3683215532596 11.0144375762362 11.0444323118994 10.2295199179682 10.7696176073837 10.6730120013039 10.5000283202862 9.11302391266063 10.9186789298489 10.3944457028557 0.0967532516542303 0.0906707812309096 0.101191733028553 0.101913343350431 0.0928712102968961 0.09879294296064 0.102400591800383 0.101870797088277 0.0945133672949928 0.0906707812309096 0.0906707812309096 0.0906707812309096 0.0934807343832407 0.0906707812309096 0.091905495965199 0.0906707812309096 0.106340896117261 0.0912303048550004 0.0908070413018033 3 3 - 4772304 4772790 4772540.455 4771909 4775126 - gene protein_coding_gene FALSE TRUE AT3G14310.1 ATPME3 (Arabidopsis thaliana pectin methylesterase 3) encodes a pectin methylesterase similar to ATPME2 (Arabidopsis thaliana pectin methylesterase 2) [Arabidopsis thaliana] (TAIR:AT1G53830.1); similar to pectin methyl esterase [Solanum tuberosum] (GB:AAF23892.1); similar to pectin methyl-esterase [Nicotiana benthamiana] (GB:AAO85706.1); similar to pectin methylesterase [Nicotiana tabacum] (GB:CAB95025.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.116799441520212 -1.09135584205254 0.298692408520634 1 -0.0399694465592202 20.5103485918173 -0.116799441520212 0.115307744969969
AT2G15080_at 8.96592477960719 8.92826318976424 9.71352706412757 9.76013620461102 9.89882324087127 9.10842972828456 8.78623447508897 8.1090796650907 8.40656499632932 9.2558880630253 8.10249767914054 8.18117274396078 8.55225781417598 8.87511177700572 6.8972871713948 8.82390587172934 9.03941739028608 8.44649041615644 9.30914503305683 0.164364738413878 0.163063676755946 0.166826677756606 0.166101742935492 0.173613373838367 0.171322720608164 0.170841650093901 0.169067161363988 0.189554420822796 0.169072938424996 0.168099528973624 0.165970911948608 0.167751671997307 0.165804437290440 0.194257603610597 0.162385758324956 0.175810914935584 0.176003635701441 0.170358006594481 2 2 + 6543212 6543740 6543502.636 6540769 6544077 + gene protein_coding_gene FALSE TRUE AT2G15080.1|AT2G15080.2 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G11010.1); similar to disease resistance protein [Lycopersicon esculentum] (GB:AAC78591.1); contains InterPro domain Bacterial surface protein 26-residue repeat; (InterPro:IPR011889); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.148544221298279 1.09119391849730 0.298760537671848 1 -0.0401294904080364 17.8364524461565 0.148544221298279 0.180413230174479
AT3G44820_at 4.11148420363677 4.38565594088649 4.64859391083725 4.31729451343739 4.62769003935471 4.79652190454132 5.01324512312926 5.19390629375441 3.79986805488836 4.02328243212177 4.98532942824608 4.23999060161511 4.7059513558857 4.58656690131775 3.86225894792841 4.17399358428521 4.28936380223934 4.29354853178411 4.48742687338926 0.249386214741571 0.243330415307433 0.236389698329453 0.245129987307754 0.236463286871396 0.242392984362683 0.239524247545434 0.246168028188802 0.245456561261068 0.238409640525981 0.236389698329453 0.236389698329453 0.237772014292034 0.248897177130566 0.23932955959431 0.23883356701515 0.249086027463119 0.24038383895077 0.240137228035469 3 3 - 16372905 16373350 16373142.455 16372851 16375396 - gene protein_coding_gene FALSE TRUE AT3G44820.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G30440.1); similar to putative non-phototropic hypocotyl 3-like protein [Ipomoea trifida] (GB:AAS79592.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) 0.105025904526926 1.09052684049454 0.299041334941607 1 -0.0407886274481426 8.88462458167846 0.105025904526926 0.0858448975203591
AT2G34315_at 0.893302477034447 1.20282494310532 1.08052631488916 1.53294445379921 0.87710187464387 1.19322390772243 0.88667366159709 0.720344619954458 1.18506657398273 1.12705356621787 1.12052538649895 1.06890177485690 1.44311296692727 1.41024992781669 0.891555112529437 1.32256458778538 1.29444041572165 1.61669311896830 1.54159513612949 0.204069354611382 0.203640460780455 0.199559675190459 0.202389638244874 0.199687538403571 0.200697493370365 0.196132737028429 0.198816470406248 0.209440340223734 0.202942469261653 0.198498161843748 0.198536034954357 0.200249569951745 0.198112998769911 0.207413049475825 0.196561451152046 0.198737610271926 0.202585882866329 0.200481879857561 2 0|2 /|- 14487344 14489447 14487885 14487333 14490135 - gene protein_coding_gene FALSE TRUE AT2G34315.1 disease resistance protein-related similar to avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative [Arabidopsis thaliana] (TAIR:AT1G33870.1); contains InterPro domain AIG1; (InterPro:IPR006703) 0.115798182476108 1.09035451331459 0.299113906377455 1 -0.0409588516562626 2.32615636667563 0.115798182476108 0.113226536178267
AT3G30350_at 2.22049149599219 1.71613061585028 2.06575183859763 1.99193387697685 1.62088406690407 2.01597352579698 2.07226148090244 2.44854406376267 2.03573574107647 2.42720995061898 2.40986257083285 1.84195853998305 2.27378975613794 2.0363890669666 2.49804844430186 2.31775841655912 2.66102205168464 2.56314884820894 2.67798685470820 0.219300458874838 0.216048830108186 0.215091616889103 0.219931753471385 0.212370910969628 0.223668776258682 0.219904712702935 0.211066053688322 0.212599832874642 0.211858091746422 0.216804586955974 0.218455845525702 0.214418070780264 0.215470298927785 0.21506931847964 0.207768944287721 0.215171828645590 0.209657512263983 0.21367943282733 3 3|0 -|/ 11963043 11964205 11963492.3 11962896 11964265 - gene protein_coding_gene FALSE TRUE AT3G30350.1 unknown protein -0.122892362012426 -1.09032910758437 0.299124606523417 1 -0.0409839455596835 4.37177540091569 -0.122892362012426 0.129214397024904
AT2G39790_at 0.500105435616879 0.994899649695003 0.717773784114428 0.621639890749498 0.682702880222422 0.799833458241994 0.0788100102845924 0.510418532246211 0.712410141419311 0.671551390259827 0.825065990904627 0.815042632553893 0.761299848354167 0.793050053546354 0.994129313154214 0.700404229713329 1.1602979765676 0.725215860833279 1.00640737366151 0.190023240597062 0.194245875139196 0.192015276209683 0.196613009700912 0.195635345689844 0.190023240597062 0.199015916611306 0.195075536640121 0.196981209161286 0.195197009946463 0.205062594376853 0.192558606421150 0.192298082594334 0.194100455051013 0.190505573036619 0.193926547219060 0.199521629945424 0.210971137474631 0.198040609190564 2 2|0 +|/ 16602047 16602761 16602334.3 16601911 16602878 + gene protein_coding_gene FALSE TRUE AT2G39790.1 mitochondrial glycoprotein family protein / MAM33 family protein Identical to Uncharacterized protein At2g39790, mitochondrial precursor [Arabidopsis Thaliana] (GB:O22288); similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT2G39795.1); similar to Os06g0326500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057529.1); similar to Os01g0143300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041996.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16469.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) 0.117226349730648 1.09006547940555 0.299235656177128 1 -0.0412443108247658 1.43507439180487 0.117226349730648 0.116612205389312
AT3G23930_at 2.16201349320914 2.48405586461116 2.69208643349508 2.22338080005167 2.48955438486518 2.5980256395599 2.48980997651806 2.38119880315777 2.73284622849810 3.02661646066887 3.02285761604094 2.80214426225906 3.08723481729656 3.17762109751196 2.85836323799686 2.84700714120822 2.69935298262518 2.87903891997721 2.70366315001686 0.183720037956881 0.189957051250921 0.196964028891661 0.181782868475347 0.186041733970669 0.195141060554464 0.183595060516018 0.193673745381815 0.190210359461839 0.187918627590424 0.181305232861422 0.189040673908737 0.183799219385964 0.186594099323853 0.188321477909587 0.180832264600266 0.193507816006373 0.199799022645936 0.195748054026797 3 3|0 +|/ 8647149 8647755 8647494.1 8646904 8647915 + gene protein_coding_gene FALSE TRUE AT3G23930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13540.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG09246.1); contains domain C-terminal, gelsolin-like domain of Sec23/24 (SSF82754) 0.111076421544409 1.08993797784919 0.299289375682522 1 -0.0413702165138882 5.31138790231305 0.111076421544409 0.101934729276493
AT1G12310_at 9.012090212112 9.28295397378462 8.83738550297194 8.86213895966744 9.41198392338492 9.09599686721385 9.01030501206632 9.27414821991673 9.28578377623862 8.70988358674882 9.41094555440203 9.54602486337612 9.05394691734645 9.29038364418488 9.58849691808711 9.22031007857652 8.76146174614192 9.14623256847417 8.85342465998476 0.111444863856325 0.0993760377439455 0.100915563095017 0.101785540009959 0.103277923478203 0.0988064869903151 0.106626329693588 0.100826786645385 0.0998538917713457 0.103565780225040 0.0978087836912856 0.100344305241907 0.100138973379004 0.104637711885985 0.104718463884914 0.104621475316015 0.106679729823261 0.102963692446485 0.107984813174920 1 1 - 4187606 4187908 4187749.727 4187163 4188054 - gene protein_coding_gene FALSE TRUE AT1G12310.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G62820.1); similar to putative serine/threonine kinase [Vitis vinifera] (GB:AAO49473.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.104764952086268 1.08951988566651 0.299465579648552 1 -0.0417829942946802 18.1993366475469 0.104764952086268 0.0853847167409531
AT3G57700_at 3.66027069922229 3.91532273714634 4.21311711546134 4.82967687477754 3.07354452353599 3.34322503802156 2.47386447500734 2.79111164730383 3.97375234174897 2.84578561635758 2.80389666813974 2.48721104965452 2.38153558376994 3.13696532226889 2.23384231626450 2.94490791797095 3.07140973464417 3.20997202211304 2.74002555150075 0.2383112840983 0.23831616269421 0.239311600870286 0.242889405105042 0.237509385434076 0.247196146156114 0.244375087974756 0.238321556039420 0.253265007003116 0.237509385434076 0.237509385434076 0.247296483638121 0.237796175512099 0.245147478767366 0.25009428414722 0.243551768281184 0.246004420755831 0.238501387298155 0.237509385434076 3 3 + 21396380 21396860 21396670.909 21395894 21396916 + gene protein_coding_gene FALSE TRUE AT3G57700.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57770.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to Protein kinase; Type I EGF [Medicago truncatula] (GB:ABD28548.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.125972452631638 1.08921138787998 0.299595645989868 1 -0.042087490768256 6.52263601217069 0.125972452631638 0.136106236381146
AT3G52340_at 7.52725638902985 7.94473494014248 7.48183530040999 7.42869084530538 8.25144831758104 7.58415760910612 9.13697660548597 8.83861211357268 8.41993917584638 8.23035835419781 8.52983884529954 8.7043596848729 8.68842102149 8.64662072239535 8.36600361080083 9.29794314493419 8.63012605824628 8.42938829888042 8.0923096451253 0.171962571752163 0.170903605745411 0.183276508265882 0.173131288347813 0.163802924113273 0.181483731845960 0.165066280545724 0.170610588862614 0.168604371095747 0.161740492278994 0.16783804963322 0.166748170428041 0.174907010974566 0.163105422249820 0.173734917877067 0.167115479579655 0.181340144809713 0.173806333772244 0.162716241620494 3 3|0 +|/ 19419321 19419964 19419582.3 19418001 19420435 + gene protein_coding_gene FALSE TRUE AT3G52340.1|AT3G52340.2|AT3G52340.3 SPP2 (SPP2); sucrose-phosphatase sucrose-phosphatase (SPP2) similar to sucrose-phosphatase 1 (SPP1) [Arabidopsis thaliana] (TAIR:AT2G35840.2); similar to sucrose phosphate phosphatase [Malus x domestica] (GB:AAS79792.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Sucrose phosphatase, plant and cyanobacteria; (InterPro:IPR012847); contains InterPro domain Sucrose-phosphate phosphatase; (InterPro:IPR006378); contains InterPro domain Sucrose-6-phosphate phosphohydrolase C-terminal; (InterPro:IPR013679); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380) -0.130655022824334 -1.08886348623140 0.299742377102492 1 -0.0424307985283222 16.4787757142899 -0.130655022824334 0.145963267122904
AT1G77740_at 7.77737941393959 8.27821073359434 7.76105878273465 7.89506296730072 8.11145773297394 7.98814959299621 9.0678335607972 8.55449261072925 7.6013193133032 7.98469160399796 8.6288346650371 8.68272994249279 8.28721147993517 7.92197116093523 7.77728485075365 8.39344265590629 8.20678048695052 7.70811634793137 8.30619164753628 0.20168951062822 0.206450896673915 0.224064990113974 0.219610564525562 0.200417220841504 0.222260613806615 0.206434850046625 0.207091682638979 0.218473322106117 0.213821075934289 0.206310342140204 0.213997036872951 0.200417220841504 0.206480138696128 0.209262227955469 0.205531060059986 0.215207914092991 0.218404397564463 0.207946451562821 1 1 + 29227624 29228721 29228387.727 29225432 29229114 + gene protein_coding_gene FALSE TRUE AT1G77740.1 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative Identical to Phosphatidylinositol-4-phosphate 5-kinase 2 (EC 2.7.1.68) (AtPIP5K2) (1-phosphatidylinositol-4-phosphate kinase 2) (PtdIns(4)P-5-kinase 2) (Diphosphoinositide kinase 2) (PIP5K2) [Arabidopsis Thaliana] (GB:Q8L796;GB:Q9CA20); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to ATPIP5K1 (Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase 1), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT1G21980.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT2G26420.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); similar to putative phosphatidylinositol-4-phosphate-5-kinase [Zea mays] (GB:AAL76002.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABE83677.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.121908941816717 -1.08632138348044 0.300816196895344 1 -0.0449367103340432 16.2616376595609 -0.121908941816717 0.128050273404084
AT4G30090_at 1.4487267073357 1.78320408933699 1.40310782472317 1.56692233277312 1.10509523015658 1.64473675788453 0.964754898537627 1.18161933693347 1.49778516795477 1.59136964419628 1.90704458372407 1.73431338145441 1.08682652240693 1.54447279793403 1.45351360614139 1.36567455624561 1.19656907580663 1.56188488499249 0.902450976252718 0.211968395115124 0.208728103508508 0.213000266540795 0.214889835305797 0.213148960704875 0.208956089308515 0.209954583824359 0.208728103508508 0.216505166983816 0.214398024330857 0.225469379828771 0.213260648525063 0.21620683051577 0.211536183361168 0.214743680226759 0.217232439175225 0.215932168860742 0.21837286683462 0.216621164294281 4 0|4 /|- 14709340 14710098 14709638.625 14708723 14711618 - gene protein_coding_gene FALSE TRUE AT4G30090.1 EMB1353 (EMBRYO DEFECTIVE 1353) similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93369.1) 0.118070720817671 1.08614998455386 0.3008887034338 1 -0.0451055029205852 2.79318224165487 0.118070720817671 0.11951469754548
AT1G68380_at 0.161607411621524 -0.374095993715675 -0.0368069529434581 -0.328919446149601 -0.112032174418221 -0.367910141412681 0.230837121905811 -0.364496881082539 -0.0307909204774811 -0.0476778968567367 -0.100385446101668 -0.168736401468052 -0.113615358545241 -0.56685556115452 -0.176592835695384 -0.206220232437349 0.0523281616605764 -0.29018126564956 -0.0793151810897704 0.192939876561421 0.195273803548531 0.192039767861139 0.194062680648775 0.20045002875285 0.19325414515848 0.191232895991878 0.199890201496664 0.198709686062062 0.198566332777492 0.198976642416269 0.197410585120068 0.194892510550480 0.191551966110224 0.199114488740382 0.192391680756456 0.194438657577668 0.191232895991878 0.191638034086308 1 1 - 25639610 25640137 25639872.545 25639501 25641125 - gene protein_coding_gene FALSE TRUE AT1G68380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68390.1); similar to Protein of unknown function DUF266, plant [Medicago truncatula] (GB:ABE91847.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77886.1); similar to Protein of unknown function DUF266, plant [Medicago truncatula] (GB:ABE78946.1); contains InterPro domain Protein of unknown function DUF266, plant; (InterPro:IPR004949) -0.134283897347921 -1.08606237242172 0.300925770951453 1 -0.0451917746841504 -0.273415648806970 -0.134283897347921 0.154028757268916
AT4G23090_at 1.79030518854032 1.79793037818032 2.27158216850073 2.41110236323644 2.19106545305689 2.00985634803604 2.02295521436451 2.08844815251361 2.33892200406976 2.65292490359212 2.46032587295539 2.32949553509020 2.70289702865879 2.00952066639181 2.39505548832031 2.37214968469271 2.17508623793286 2.87629456399673 2.58961223906171 0.179676257543237 0.181197116269207 0.186054444377418 0.184149469545356 0.184332445361642 0.177962935126993 0.184823866160229 0.181721603436740 0.185389274386633 0.186306372723772 0.183008660642683 0.182538457476172 0.180203035172812 0.178692476879314 0.191785185369829 0.177962935126993 0.182589993568941 0.184396412799463 0.181969173655691 4 4 - 12100589 12101463 12100951.364 12100402 12101494 - gene protein_coding_gene FALSE TRUE AT4G23090.1|AT4G23090.2 contains InterPro domain Green fluorescent protein-like; (InterPro:IPR009017) 0.0919709678274114 1.08465962096782 0.301519729527935 1 -0.0465723178066964 4.54403375013497 0.0919709678274114 0.0411892250801787
AT4G12010_at 4.98818859635054 5.86080721678968 5.54076005686569 5.51676859006596 5.34295314566642 5.33032930572891 4.10511618962131 4.26526232977772 4.05317914831299 3.81717941102455 3.57551109722701 3.54457507203113 3.41356299301314 3.7444557144467 2.81481942762762 3.81235513804611 3.31613216959290 3.68650748696829 3.67556301720845 0.238273255184829 0.236616472694845 0.233742750912790 0.236890750438953 0.236610120349863 0.247304280392771 0.233373912268335 0.239369376316918 0.252952610767401 0.235812042614141 0.232644442518605 0.235589846788259 0.234190889135930 0.237783140720607 0.234384603480891 0.232644442518605 0.266068152341282 0.237604788226038 0.239115827609703 4 4 - 7197371 7197879 7197674.727 7197205 7201387 - gene protein_coding_gene FALSE TRUE AT4G12010.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G19510.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45200.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.133854276650357 1.08429083873666 0.301676028682358 1 -0.0469350277105537 8.7873383853005 0.133854276650357 0.153604414810465
AT2G27470_at 4.15082417401343 3.4671996892257 4.2627559622901 3.96284599010674 3.71219456237578 3.70076626624037 3.84356566551994 3.45167348711542 3.97186250884727 3.71741060741916 3.73447110230818 4.15873147852571 3.80506802889702 3.820011786548 3.92780871466563 3.57149993418213 4.08016445859083 4.00932703976013 3.73937452821299 0.190814690212808 0.195490401674008 0.194864037527837 0.189978031252795 0.190032544360795 0.189339229529175 0.197025288501630 0.203539199063842 0.189339229529175 0.191381877548286 0.195623933141521 0.192665432461986 0.191717973954507 0.189339229529175 0.191037067849158 0.190438493410824 0.197655151090094 0.199808936603403 0.190702730531014 2 2 - 11752307 11753001 11752652.273 11752059 11753471 - gene protein_coding_gene FALSE TRUE AT2G27470.1 CCAAT-box binding transcription factor subunit HAP3-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to PREDICTED: similar to polymerase (DNA directed), epsilon 3 (p17 subunit) [Strongylocentrotus purpuratus] (GB:XP_785187.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001076490.1); similar to Os09g0568200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063969.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.130080522196429 1.08424663598417 0.301694767051067 1 -0.0469784960906504 7.66794549099152 0.130080522196429 0.145920951954644
AT1G70450_at 3.16586426529475 2.77750226446108 3.16687042266138 3.09574445843373 2.67756664879039 2.69744206241503 2.63747947728957 2.44482594530896 2.89927525688886 2.9082372544873 2.94115089628755 2.63508437812716 3.15961786722031 2.68575694301095 3.00803114938527 2.64217102365982 2.75594516293871 3.21766606107276 2.68693901355929 0.164872444137663 0.162817526642833 0.16732482630793 0.165080652746349 0.163777689912329 0.166881441091346 0.160006636450549 0.168024096327322 0.161411094812864 0.159581997277937 0.160394617839643 0.162913541351315 0.16377317152933 0.162374140891938 0.162908486199344 0.158271328002813 0.168908229358459 0.161652713361980 0.162305325790586 1 1|0 +|/ 26557349 26558050 26557917.7 26556239 26558100 + gene protein_coding_gene FALSE TRUE AT1G70450.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70460.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70139.1); similar to Os06g0486000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057663.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.101091001777106 1.08410857206582 0.301753300612456 1 -0.0471142572437848 5.68899283151084 0.101091001777106 0.0761036019836702
AT3G57480_at 4.92657221654119 5.56440802220433 5.61221137982584 5.45955273812443 5.09909510897602 4.53012809863820 4.23645700660481 4.72480686073153 4.8044236146272 4.92032059239398 4.69949963596021 4.50274132110479 4.5164906766305 4.52890933713111 4.22691418879519 4.18503747897406 3.79890850135393 4.67361085017546 5.24646269178812 0.224385134068288 0.229609428576109 0.23788743132694 0.233347580630200 0.219113144564204 0.218620939102852 0.214403755833911 0.216844263017728 0.237512661608314 0.218845014656625 0.227210734655977 0.214403755833911 0.215940433716483 0.226201916084159 0.232912331610440 0.214403755833911 0.237914184187169 0.243860731508448 0.226291810611816 3 3 - 21289063 21289580 21289329.9 21288913 21290331 - gene protein_coding_gene FALSE TRUE AT3G57480.1 zinc finger (C2H2 type, AN1-like) family protein Identical to Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 (AtSAP13) (SAP13) [Arabidopsis Thaliana] (GB:Q9SCM4); similar to zinc finger (C2H2 type, AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G41835.1); similar to putative zinc finger protein [Cucumis sativus] (GB:CAI30888.1); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.143351247983392 -1.08391299806153 0.301836230921039 1 -0.0473065459108022 9.71011207814017 -0.143351247983392 0.172391303840017
AT4G19410_at 10.7066664145310 10.7128626079316 9.70453232794936 9.52663049279626 10.5147230390761 9.8544288073093 9.45057827744422 9.44548343085677 10.5182575970915 10.0009802772054 10.347936340378 10.5080647390721 9.65926388544844 10.1749192603946 10.4809883125530 10.0122994534019 9.33812224416252 10.0936074245443 9.87866213504043 0.108191649149125 0.106318354051134 0.114208894015004 0.106341149929564 0.111303029893850 0.116777197232198 0.113470583098922 0.106981357075002 0.112541389726332 0.107403891428313 0.105050969501819 0.104977064024122 0.112130623184822 0.108402997128448 0.107328388487031 0.106185756972235 0.118509532137235 0.106473067481098 0.109960885621534 4 4 - 10582202 10583403 10582567.636 10582032 10585769 - gene protein_coding_gene FALSE TRUE AT4G19410.1 pectinacetylesterase, putative similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G45280.2); similar to OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41867.2); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); similar to Os04g0602500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053773.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.11727607242979 -1.08351950868772 0.302003136861438 1 -0.0476933422754154 20.0942549467069 -0.11727607242979 0.118349892685526
AT1G11160_at 1.3876919871687 1.36866968271705 1.13525969059641 0.986197201975786 0.86711347209064 1.01188138733099 1.04860826005889 1.03864217570085 0.81073035062032 0.624605072880084 1.08782899287553 1.10102268555355 1.35059573849327 0.920764889118506 1.18551064713265 1.68046546016675 1.43516008496957 1.30924347683318 1.16324051669532 0.210629542167311 0.212922612060255 0.213820844930063 0.210336307126427 0.209129185221952 0.211624702654355 0.212325174332801 0.210788455374238 0.216375226152421 0.210629548633843 0.212304267804182 0.208319433654297 0.208319433654297 0.219163698497139 0.208319433654297 0.214738813156586 0.211935252155442 0.223595349129494 0.212089653632540 1 1|0 +|/ 3738191 3739126 3738706.889 3733925 3739703 + gene protein_coding_gene FALSE TRUE AT1G11160.1 WD-40 repeat family protein / katanin p80 subunit, putative similar to WD-40 repeat family protein / katanin p80 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G61210.1); similar to H0801D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86243.1); similar to H0402C08.11 [Oryza sativa (indica cultivar-group)] (GB:CAJ86235.1); similar to OSJNBa0064G10.18 [Oryza sativa (japonica cultivar-group)] (GB:CAE05767.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0909209642073579 1.08312050017644 0.302172455479373 1 -0.0480854506414123 2.16801597068397 0.0909209642073579 0.0361508441133105
AT4G27800_at 11.2952752199593 11.121791900544 11.3825153425560 11.1961144986343 11.4771426256631 11.2138591257781 11.1855732074908 11.0133945418457 11.2643104945708 11.2672293752905 11.2475660129169 11.1584684362734 11.2662207207914 11.3230372539461 11.1004964121187 11.3725769327872 11.3321854747106 11.3627747755768 11.1754710987687 0.0607770583190432 0.0600078910672886 0.061708994002702 0.0613475287987399 0.0600307534408246 0.0617471840893298 0.0596828722785279 0.0617702369151164 0.0660837980853039 0.0622393160088935 0.0615840493941822 0.0593119000849906 0.0593142981260371 0.0619164337807523 0.0606400438005871 0.0596133675998514 0.0622703629108518 0.0594137345615173 0.0605950138525413 4 4|0 -|/ 13852066 13853256 13852572.9 13851868 13854197 - gene protein_coding_gene FALSE TRUE AT4G27800.1|AT4G27800.2|AT4G27800.3 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) Identical to Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) (PPH1) [Arabidopsis Thaliana] (GB:P49599;GB:Q9M0J6;GB:Q9STP6); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G43900.1); similar to protein phosphatase homolog (GB:AAA92889.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|Identical to Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) (PPH1) [Arabidopsis Thaliana] (GB:P49599;GB:Q9M0J6;GB:Q9STP6); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31860.1); similar to protein phosphatase homolog (GB:AAA92889.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0990723051056852 1.0829385892295 0.302249673037211 1 -0.0482641779028146 22.4887513454423 0.0990723051056852 0.0700402127030648
AT4G01850_at 10.4970720796809 10.5300720765991 10.3418023890917 10.4916902635273 10.5542695398771 10.5011615430969 10.6281984153656 10.7596447087248 10.8142584624545 10.6133174370264 10.5510720659309 10.6755433330321 10.5629338273745 10.544540599072 10.7180864200533 10.8152514658997 10.7957362033569 10.5879668983439 10.6924669981268 0.0738935822210269 0.0735107825522642 0.0765978471050745 0.0784590111886407 0.0769218312637691 0.0753966979741428 0.0749391867538488 0.0788384319464107 0.0845498712660403 0.0722422421450636 0.0769488599099357 0.073101973857133 0.0733721045988311 0.0736287346023506 0.0746024707731145 0.07169548133223 0.0763554779119168 0.0779921306477308 0.0726456336679215 4 4 - 796321 796841 796580.545 796097 798286 - gene protein_coding_gene FALSE TRUE AT4G01850.1|AT4G01850.2 MAT2/SAM-2 (S-adenosylmethionine synthetase 2); methionine adenosyltransferase|MAT2/SAM-2 (S-adenosylmethionine synthetase 2) Identical to S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine adenosyltransferase 2) (AdoMet synthetase 2) (SAM2) [Arabidopsis Thaliana] (GB:P17562;GB:Q42263); similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT3G17390.1); similar to MAT3 (METHIONINE ADENOSYLTRANSFERASE 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT2G36880.1); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71235.1); similar to S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (GB:P49611); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71233.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) -0.0909027502153656 -1.08289048005483 0.302270096926645 1 -0.0483114411374803 21.2195250357465 -0.0909027502153656 0.0361572291239462
AT2G01720_at 9.94100037455266 10.2743858223182 9.92789834318755 9.95136739022855 9.87017317378903 9.7657475692992 9.60008158358746 9.64506514690228 9.1343551490241 9.13739771379694 9.27926199306974 9.56932758772112 9.07991607199958 9.32821410790924 9.47263044204284 9.1750374149675 8.8001531428505 9.48593712647041 9.01179721203456 0.142883681901675 0.141277488532721 0.144536014953289 0.13922265661051 0.137561481511832 0.147012144196711 0.142517204400295 0.136612761941093 0.159209083891052 0.143959984927443 0.138081887971697 0.139096258772268 0.140735279391712 0.137336882053327 0.139306785242126 0.137791244339728 0.164124997029347 0.147650128099825 0.144369765123654 2 2|0 -|/ 317218 318291 317683.333 317032 320263 - gene protein_coding_gene FALSE TRUE AT2G01720.1 ribophorin I family protein similar to ribophorin I family protein [Arabidopsis thaliana] (TAIR:AT1G76400.1); similar to Os05g0301500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055134.1); similar to putative ribophorin I homologue [Hordeum vulgare subsp. vulgare] (GB:CAA74910.1); contains InterPro domain Ribophorin I; (InterPro:IPR007676) 0.0964782157731283 1.08285629349030 0.302284610858468 1 -0.0483450255657107 19.0561281392318 0.0964782157731283 0.0610921888997702
AT3G50110_at 3.15987981298867 3.35129532348413 2.78760699834275 2.70606329595755 2.48707564024304 2.86014786252597 2.81586263785837 2.79941709930621 3.16187379114098 3.59010701294089 3.85660222714499 3.54358082142620 3.37023735813272 2.98566314889618 3.92723472301975 3.3716352340857 3.00292981742364 3.47527339488427 3.21052377207391 0.209113855515251 0.208543145203203 0.219004307090018 0.207681064655319 0.209378523871732 0.220399575063934 0.209466341099355 0.207526894903401 0.223847926451762 0.216708615847725 0.213553253444183 0.207526894903401 0.207526894903401 0.217070537172327 0.220094710547387 0.213798761573938 0.220898470692774 0.227892561394952 0.212270983423601 3 3|0 -|/ 18591797 18592451 18592026.3 18591592 18595518 - gene protein_coding_gene FALSE TRUE AT3G50110.1 phosphatase-related similar to phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT3G19420.1); similar to GA19047-PA [Drosophila pseudoobscura] (GB:EAL29329.1); similar to Os12g0407500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066634.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.100290268616963 -1.08284805811698 0.302288107271594 1 -0.0483531157622037 6.25215830851097 -0.100290268616963 0.0739781083203886
AT4G17470_at 2.29165224062556 2.75393031677961 1.67433452131824 1.70447677063042 1.69581291781337 2.19931988070385 2.14776251204664 2.01286027926514 1.65669079767384 2.11675171684130 1.97122769293506 1.51293818385181 2.00085957944712 1.56817280929774 2.42117972322236 2.83557847831644 2.38763104066298 1.83981016759549 1.68814494053330 0.231942452863112 0.230517977344518 0.223622106813313 0.230715244924614 0.223663101944723 0.22068437487955 0.223602302564774 0.224451349354867 0.231308129935614 0.239176307634335 0.228341100150406 0.228318249288879 0.222634135405552 0.225774434788709 0.223397581715085 0.226163308677991 0.227263664532258 0.224971475929966 0.225931556249964 4 4|0 -|/ 9742963 9743934 9743414.375 9742771 9744872 - gene protein_coding_gene FALSE TRUE AT4G17470.1 palmitoyl protein thioesterase family protein similar to palmitoyl protein thioesterase family protein [Arabidopsis thaliana] (TAIR:AT4G17480.1); similar to palmitoyl protein thioesterase family protein [Brassica oleracea] (GB:ABD65098.1); contains InterPro domain Palmitoyl protein thioesterase; (InterPro:IPR002472) -0.118209878414726 -1.08271263940201 0.302345605098816 1 -0.0484861402849529 4.00387061044732 -0.118209878414726 0.120683445072692
AT4G01280_at 5.80990994841504 5.85797839874884 6.31214866344126 6.56629875087146 6.64014845241267 6.76935229530709 7.09405791154165 7.16463748720211 5.15900429681155 5.66118671747473 5.19980772993039 5.17829499788794 5.70663014081286 5.50095489218022 5.1083744792606 6.16608389314935 6.29172909463497 5.87485441713064 5.77187751413089 0.253627527504958 0.238606447163714 0.239811455477244 0.248380798954058 0.248699629094747 0.242952942670496 0.253407451714249 0.238007490629334 0.249364149945677 0.243195392701314 0.246113080895712 0.243253338662124 0.243505251265539 0.238007490629334 0.244810443251732 0.238007490629334 0.24426475074538 0.247295999252366 0.244168118592494 4 4|0 +|/ 535792 536680 536175.4 535211 537320 + gene protein_coding_gene FALSE TRUE AT4G01280.1|AT4G01280.2 myb family transcription factor|DNA binding / transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G01520.1); similar to MYB transcription factor MYB133 [Glycine max] (GB:ABH02857.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0939964000910951 1.08240364566152 0.302476832768173 1 -0.0487896218287205 12.1063318460404 0.0939964000910951 0.0515046127672215
AT3G11750_at 3.98853411267701 3.86277384511545 3.49185745313491 3.14246261877964 4.01199761834937 3.92780964412739 4.01472434639501 4.50134774393444 3.23763250698418 3.59166969402022 3.52838191878450 3.58498322527849 3.86923039851884 3.96394742467787 3.81024500343344 3.92912437503625 4.00761043159823 3.46315599687645 3.80791582105208 0.181708821198890 0.180877787764964 0.179525936832678 0.180529074860048 0.181723930701194 0.186540505786898 0.181043697575506 0.196019792128723 0.184347661107508 0.183921039270679 0.187508088516630 0.189319136863378 0.179525936832678 0.183299634990467 0.186756415205083 0.183378706278608 0.180828111535519 0.187480202030044 0.185336250298009 3 3|0 -|/ 3715127 3715885 3715373.556 3715077 3715910 - gene protein_coding_gene FALSE TRUE AT3G11750.1 dihydroneopterin aldolase, putative Identical to Dihydroneopterin aldolase (EC 4.1.2.25) (DHNA) (FOLB1) [Arabidopsis Thaliana] (GB:Q9SF23;GB:Q6R8J1); similar to dihydroneopterin aldolase, putative [Arabidopsis thaliana] (TAIR:AT5G62980.1); similar to dihydroneopterin aldolase [Lycopersicon esculentum] (GB:AAR23754.1); contains InterPro domain Dihydroneopterin aldolase; (InterPro:IPR006157); contains InterPro domain Dihydroneopterin aldolase family; (InterPro:IPR006156) -0.112233836171317 -1.08151466589130 0.302854618151251 1 -0.0496623611595066 7.52535051654465 -0.112233836171317 0.106927946484038
AT4G35280_at 0.861246809934096 1.34167290550880 1.48298910213209 1.16350517058272 1.05370531920145 0.9340250906909 1.11563488410133 1.30507016000027 0.805563118116047 0.681409391735313 0.88978847163811 1.36456437988298 1.31338464044167 0.945498663781058 1.59727531983402 1.05272436554846 0.731354081372583 1.77235382624193 1.47236755902935 0.21437432604854 0.210679911324640 0.203122096574582 0.207851946620868 0.203122096574582 0.208999650701682 0.203285956238999 0.209234098154614 0.212959942193949 0.20722456232318 0.207782429100475 0.205741858292527 0.208957934226914 0.206506266228753 0.211031930017161 0.204153500102752 0.204198307223293 0.214240548955852 0.204109013917196 4 4 - 16787471 16787998 16787730.273 16787434 16788288 - gene protein_coding_gene FALSE TRUE AT4G35280.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT2G17180.1); similar to PEThy;ZPT4-1 [Petunia x hybrida] (GB:BAA19114.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.112285629865684 1.08129221338565 0.302949208743374 1 -0.0498806611074181 2.25463850937871 0.112285629865684 0.107110673534
AT4G37550_at 9.22046331881651 9.50336754003636 9.64720421950448 9.7215552777870 10.1638838145460 10.0097521567657 10.4744755674863 10.359665222441 10.0946141689292 10.6079457161699 10.6325942212067 10.6449797110839 10.4091480795729 10.4295506360314 10.4689680133202 10.8562776384973 10.5811953683023 10.552205225957 10.4243267495011 0.0978212211698202 0.0954964777392189 0.0993026768078391 0.097823147078304 0.0948180832944874 0.102441718453899 0.0955794068913194 0.0919922366939937 0.111042254387432 0.0949461028183043 0.094329503150682 0.0911087206388695 0.094818240871145 0.0950138152679272 0.093561194521876 0.0911087206388695 0.0969452020383616 0.0946998600296434 0.094975011784585 4 4|0 +|/ 17644813 17645625 17645189.3 17643575 17645824 + gene protein_coding_gene FALSE TRUE AT4G37550.1|AT4G37550.2 formamidase, putative / formamide amidohydrolase, putative|formamidase similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37560.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346.1); similar to formamidase [Synechococcus sp. WH 5701] (GB:ZP_01084549.1); contains InterPro domain Acetamidase/Formamidase; (InterPro:IPR004304)|similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37560.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346.1); similar to acetamidase/formamidase family protein [Synechococcus sp. JA-3-3Ab] (GB:YP_475820.1); contains InterPro domain Acetamidase/Formamidase; (InterPro:IPR004304) 0.0961709692510826 1.08100115496134 0.303073005621828 1 -0.0501662326857397 20.3612927596462 0.0961709692510826 0.060569345317037
AT1G15640_at 1.08948434251701 1.28284522252105 1.61254870533869 1.74686167973017 1.31412856420574 1.19119745314271 1.28254209281017 1.51468122095954 1.52611511797486 2.19487446191721 1.31933618096534 1.38266535554787 1.24719497820697 1.58228229080877 1.33017973238338 1.6126010486488 1.37599692121639 1.42937063184151 1.60801243873600 0.196301260131584 0.194634526342256 0.192452375165323 0.197429197003021 0.193589485962460 0.191967097387964 0.19089551963085 0.195512617659270 0.192590893590483 0.194307150210725 0.194696537753971 0.192368431318734 0.198022916274656 0.199938621852165 0.193209066448767 0.192106667237270 0.202973096917156 0.199920919891435 0.190345708280678 1 1 + 5379316 5379965 5379617.909 5378881 5380132 + gene protein_coding_gene FALSE TRUE AT1G15640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15620.1) -0.0962923664272979 -1.08091715293538 0.303108741634405 1 -0.0502486398573807 2.972429859484 -0.0962923664272979 0.0610441680889522
AT3G44370_at 3.12395719027936 3.87384498059029 3.84417120172448 3.71123686294092 3.04629398488706 3.24605104592888 3.16275265090593 3.71039456805874 2.37034988765521 2.91440152336865 2.98948413690341 2.86069681468630 3.43391993907500 3.16254959058957 2.92122642498612 3.19181767901693 3.04611775360939 2.96289807274600 3.07339236850897 0.265266501536527 0.282198878615639 0.273617981885148 0.269210940672157 0.271092241956486 0.265590632236829 0.270228287285457 0.263218522212691 0.283082082801290 0.265430095660126 0.276363365592817 0.263218522212691 0.268464017597254 0.263218522212691 0.272237847668974 0.263218522212691 0.263218522212691 0.274057639476253 0.286010113522174 3 3|0 -|/ 16044323 16045504 16045115.714 16041311 16046148 - gene protein_coding_gene FALSE TRUE AT3G44370.1 binding similar to OXA1 family protein [Arabidopsis thaliana] (TAIR:AT1G65080.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28559.1); similar to Os06g0171600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056935.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.139620900676201 1.08066223387596 0.303217208496484 1 -0.0504986880503405 6.39340617464572 0.139620900676201 0.165971764176306
AT2G27630_at 0.952249024630488 1.29992671167000 1.41667739614375 1.35084853734027 1.03372652135534 1.19567381419548 0.99495046042902 0.863345590636283 1.01792216629338 1.29557730996674 1.00104007278880 0.967739115255111 1.28623923168436 1.02980610261827 1.39849300503301 0.916343520462906 1.41704773424580 1.44246375917462 1.30357634355877 0.189924847869625 0.188098539075065 0.184421785768386 0.189985876844995 0.191713792204833 0.185837157154583 0.187253923602067 0.184238596300142 0.188508640343766 0.188866492252953 0.1847307361951 0.194835885237929 0.185453432744618 0.184238596300142 0.184238596300142 0.184238596300142 0.197116163180760 0.194070689692733 0.184238596300142 2 2 - 11794748 11795413 11795034.6 11794475 11799681 - gene protein_coding_gene FALSE TRUE AT2G27630.1 ubiquitin carboxyl-terminal hydrolase-related similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT2G27650.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT5G51530.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT5G61950.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) 0.0991591240677474 1.08037281214268 0.303340391805345 1 -0.0507825231256382 2.33246901084882 0.0991591240677474 0.0710915594254293
AT2G42810_at 7.01143487635653 6.85937113475582 6.83451518729215 6.68226764166963 7.40410698974632 7.33131371390151 6.6100114725257 6.99159399671458 6.8242952338649 6.13924716997406 6.69666043427883 6.2124492391693 6.88435578073654 6.4937134140481 6.34963550116274 6.692601443571 6.89970753600225 6.00013509557401 6.60139530166295 0.193352623457209 0.179431705512869 0.184624086066865 0.188577370876282 0.184368423951200 0.18376395425012 0.186515891296452 0.184831802455084 0.189956178352995 0.188622445168718 0.184464134770259 0.181461055264933 0.178871572115033 0.189734628987077 0.182991427662508 0.180254643367211 0.189400161023468 0.181901906015795 0.188069876940377 2 2|0 -|/ 17819634 17820327 17820025.222 17819012 17823769 - gene protein_coding_gene FALSE TRUE AT2G42810.1|AT2G42810.2 PAPP5/PP5 (PROTEIN PHOSPHATASE 5); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase|PAPP5/PP5 (PROTEIN PHOSPHATASE 5); phosphoprotein phosphatase/ protein binding Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes to the cytoplasm in darkness and in the nucleus in light. The gene is alternately spliced. This variant does not contain membrane domains.|Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope. similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to TOPP8 (Type one serine/threonine protein phosphatase 8), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT5G27840.2); similar to type 5 protein serine/threonine phosphatase 62 kDa isoform [Lycopersicon esculentum] (GB:AAO26213.1); similar to type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] (GB:AAN64317.1); similar to Os05g0204900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054892.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein phosphatase 5; (InterPro:IPR011236); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Serine/threonine phosphatase, PPP5; (InterPro:IPR013235); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)|similar to TOPP8 (Type one serine/threonine protein phosphatase 8), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT5G27840.2); similar to type 5 protein serine/threonine phosphatase 62 kDa isoform [Lycopersicon esculentum] (GB:AAO26213.1); similar to type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] (GB:AAN64317.1); similar to Os05g0204900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054892.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein phosphatase 5; (InterPro:IPR011236); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Serine/threonine phosphatase, PPP5; (InterPro:IPR013235); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.100979708399061 1.08031088151722 0.303366755573149 1 -0.0508432505059105 13.4907284803212 0.100979708399061 0.0768500632822583
AT1G62980_at 1.94785302860600 1.99941561995266 2.12753129745159 1.83341789200793 1.77232397886058 1.85754015670252 1.80693136120185 1.90372889710851 1.72226926277167 1.90245186568754 2.1733783015069 2.33311266885536 2.12428929771510 1.89984717762192 2.29845213757170 1.5749284668062 1.74717506302287 2.0893771963738 1.84532535698033 0.218715828707381 0.211145124830193 0.21648884971545 0.221202840283677 0.219229584448991 0.209609112364792 0.219892157909566 0.211112908682746 0.218261939127915 0.220893671251949 0.213869827169265 0.219091341523474 0.217286283921457 0.214634775137616 0.215370543140245 0.209609112364792 0.220846610458273 0.212785737989969 0.21571569125102 1 1|0 +|/ 23335851 23336554 23336169.6 23335341 23336775 + gene protein_coding_gene FALSE TRUE AT1G62980.1 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A18 precursor (AtEXPA18) (Alpha-expansin-18) (At-EXP18) (AtEx18) (Ath-ExpAlpha-1.25) (EXPA18) [Arabidopsis Thaliana] (GB:Q9LQ07); similar to ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7) [Arabidopsis thaliana] (TAIR:AT1G12560.1); similar to Putative expansin-A30 precursor (OsEXPA30) (Alpha-expansin-30) (OsEXP30) (OsaEXPa1.32) (GB:Q8W2X8); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.094971157371391 1.08013987086930 0.303439563564609 1 -0.0510109243039449 3.83280221256849 0.094971157371391 0.0562874642398893
AT1G10180_at 5.96142717740029 6.80023942648719 5.02368188459387 5.57608211290592 5.945382246029 6.52329334092104 5.23181704741165 6.53642579369768 6.02723036161591 5.74715003665024 6.00656378978718 6.51802018028267 5.96882445417067 5.79626744016732 6.08371573792399 5.80165152719299 5.15807325883193 5.166303119406 5.86427904175305 0.239040074384418 0.239146046460921 0.248242495227402 0.239040074384418 0.248043375082573 0.241808363686964 0.252615064541608 0.244973641826215 0.243265112115025 0.239040074384418 0.241314101978386 0.241635534064206 0.242685062424792 0.246831700669605 0.246083082826988 0.240302961131231 0.250931536675186 0.241073838391114 0.244392544317981 1 1|0 -|/ 3338386 3339180 3338640.8 3338305 3341610 - gene protein_coding_gene FALSE TRUE AT1G10180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49830.1); similar to Os07g0568000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060025.1); similar to AT5g49830/K21G20_4 [Medicago truncatula] (GB:ABE86338.1); contains domain SUBFAMILY NOT NAMED (PTHR21426:SF2); contains domain FAMILY NOT NAMED (PTHR21426) -0.216246586669731 -1.08007272838672 0.303468153184407 1 -0.0510767509275105 11.7957839212525 -0.216246586669731 0.30196611799166
AT1G07390_at 2.55712972560405 2.8370918683491 2.86230575749832 2.95483392730842 3.62528367776433 3.75971211794322 3.42900500800515 3.70445093678567 2.26276329686551 3.32129733221812 2.11827711126237 2.32676603369709 2.35425080175139 2.42005020174898 2.40452132525897 2.42348524433138 3.41227584464151 2.48969447968541 3.00218074936248 0.185052967599775 0.182777614544607 0.186661638410293 0.181229607167888 0.183905135258338 0.188574775720889 0.183872395594028 0.188921658905552 0.181808413122817 0.186481133866607 0.194723119212803 0.180508821239669 0.188354752515469 0.179543474154230 0.179543474154230 0.179543474154230 0.184617826803836 0.183174259930078 0.179543474154230 1 1 + 2274040 2274630 2274328.818 2269891 2274813 + gene protein_coding_gene FALSE TRUE AT1G07390.1 protein binding similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74170.1); similar to H0821G03.10 [Oryza sativa (indica cultivar-group)] (GB:CAJ86059.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0999004218711586 -1.07992919775671 0.303529276133806 1 -0.051217457788333 5.89409942229687 -0.0999004218711586 0.0736004819298795
AT3G50200_at 2.19837669638380 1.98305149351911 2.30918402513015 2.57918223588306 1.66511522150751 2.20007259723773 2.19092660696756 1.95480780876057 2.18321982563298 2.19561641793754 2.06399389196160 2.02721286507028 2.00105358182146 2.10141178351413 2.20369217206303 1.89126849916708 1.8448031273342 2.00793367193540 2.69293222546454 0.197144802269154 0.187792575214908 0.187792575214908 0.187792575214908 0.187792575214908 0.192907825116542 0.192513887355885 0.188486611556602 0.190433022074825 0.198679110808056 0.190263514961736 0.188929530221056 0.193079538684048 0.193341733414356 0.202203380882767 0.188665380151080 0.196475030499846 0.190597189120757 0.188999595057587 3 3 - 18623693 18624185 18623931 18623445 18624306 - gene protein_coding_gene FALSE TRUE AT3G50200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50170.2); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.116493544352387 -1.07959526265205 0.303671519560647 1 -0.0515447659341626 4.32255326340039 -0.116493544352387 0.117523798137465
AT4G00840_at 1.4163577088611 2.57206587175165 2.36454081275119 2.73369030995214 3.46552422875987 2.53699580736249 2.48147132692572 2.49859189947103 3.28248860208235 2.37702655360851 2.49669255712704 2.80330998785281 2.91314849896799 2.81638831878444 1.46002981026092 2.54989663515479 2.64027007675228 2.59220244510655 2.37816133066842 0.32167816960401 0.307197868803190 0.317282773069802 0.297908700683496 0.294600374955721 0.30925009757558 0.31386123377292 0.293458536195882 0.295641121910820 0.299563797063801 0.304971171661691 0.292736815593868 0.301545959569667 0.301127896957161 0.292736815593868 0.305950254555866 0.293844249909372 0.298446563243254 0.295003337756271 4 0|4 /|- 355853 356101 355955.6 355258 357226 - gene protein_coding_gene FALSE TRUE AT4G00840.1 zinc ion binding similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT3G60800.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE93522.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.193916441875904 1.07955344732047 0.303689334836706 1 -0.0515857457969512 5.11526363908137 0.193916441875904 0.264405262268323
AT4G12860_at 2.95857186587503 2.903775580409 3.26257711481989 3.10695866785596 2.48612993183683 3.18654117087904 2.72501612741036 3.17595927054056 3.26039476715431 3.27522653562187 3.29777427009025 3.15994930380511 3.0692806808 3.27201746986202 3.35781031667851 3.31623567674063 3.16016662665373 3.49204061267491 2.69041929239319 0.168129790616629 0.170311519038198 0.162628731812701 0.172084547374545 0.181370842560464 0.165608638483645 0.176592821233330 0.168700299191078 0.164997351397739 0.166499512903598 0.171874845898205 0.173151233387942 0.172656589646901 0.173393048889112 0.169953208941749 0.166344877297008 0.171969467106452 0.171397796627509 0.171036276823897 4 4 - 7538442 7538862 7538687.273 7538442 7538900 - gene protein_coding_gene FALSE TRUE AT4G12860.1 UNE14 (unfertilized embryo sac 14); calcium ion binding similar to AGD11 (ARF-GAP DOMAIN 11), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G07490.1); similar to calcium-binding protein [Lotus japonicus] (GB:CAB63264.3); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.130016757447939 1.07953413172385 0.303697564447043 1 -0.0516046750446644 6.14619433356313 0.130016757447939 0.146958501038603
AT4G14615_at 8.98845888391867 9.10703506323087 8.94829612830692 8.90723794195598 9.3472395572717 8.95850655244787 9.36648917782136 9.36219828966693 8.9054305644929 9.3666744423657 9.08201129617499 9.13349750843604 9.1507980415307 9.15643112985962 9.15236865281242 9.13888520982893 8.861352665549 8.98794339711772 9.07316423259682 0.115399104109688 0.110041521072152 0.111336385457464 0.116647242767692 0.109899806854252 0.118452503113415 0.106694587473721 0.107591488572016 0.115967561578426 0.109435105507483 0.108050471176578 0.108993568229775 0.111179780282584 0.112823504239318 0.111246472303686 0.110080354773774 0.120489757334982 0.115998598827458 0.114069291684696 4 4|0 +|/ 8383869 8384778 8384278.111 8383759 8385074 + gene protein_coding_gene FALSE TRUE AT4G14615.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52825.1); similar to Os07g0181800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059047.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83054.1) -0.0989520337426488 -1.07944487397132 0.303735595836668 1 -0.0516921439913325 18.2221830664019 -0.0989520337426488 0.0706940154281248
AT4G35170_at 1.23465780092343 0.883024749014566 0.956988031066477 0.805128259792583 1.01544699500379 0.502175322730728 1.07815017567303 0.929362320014845 0.9508243523019 0.176950512351679 1.16336225431363 0.973185546463188 0.960311675978233 1.16825795032325 0.733637722244867 1.01169410479187 0.890265947653328 0.745442343226038 0.416410291642235 0.248143880229643 0.248143880229643 0.251287742626015 0.262091894861401 0.260070217474521 0.248143880229643 0.267828422536242 0.269529303779357 0.248143880229643 0.25341259531913 0.253420711184321 0.249682627076314 0.248143880229643 0.248143880229643 0.266637963500205 0.253479071196647 0.259292859261535 0.257989389714247 0.257278598416999 4 4 + 16736882 16737245 16737083.167 16736762 16738442 + gene protein_coding_gene FALSE TRUE AT4G35170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41990.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to CAA30379.1 protein [Oryza sativa] (GB:CAB53482.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.114838599217145 1.07910522813825 0.303880346875592 1 -0.052024930699714 1.66086574605555 0.114838599217145 0.113781675215123
AT2G24800_at 0.676221997668849 0.276839112253002 0.746863128992936 0.907288265155388 0.671296652990587 0.595895214522158 0.597376256482291 0.516438418038852 1.21227811211403 0.699047734560325 0.387189984620759 0.825269304503482 0.692418168252258 0.482362933421897 0.955666226964255 0.627588102591333 1.01541242594196 0.83045827301044 0.305417510092205 0.200781167578125 0.208012987366970 0.197070678078802 0.198852508547944 0.197070678078802 0.201973029662117 0.198062164838601 0.198087587067962 0.197070678078802 0.206534234301575 0.202674218547609 0.197070678078802 0.203082026037303 0.201631635226199 0.198570697997040 0.197070678078802 0.197070678078802 0.203722002913355 0.200763604585081 2 0|2 /|- 10578340 10578867 10578626.3 10578334 10579649 - gene protein_coding_gene FALSE TRUE AT2G24800.1 peroxidase, putative Identical to Peroxidase 18 precursor (EC 1.11.1.7) (Atperox P18) (PER18) [Arabidopsis Thaliana] (GB:Q9SK52); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G31760.1); similar to peroxidase [Spinacia oleracea] (GB:CAA71496.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.100874047231148 1.07899529978092 0.303927207605486 1 -0.0521326213108982 1.35650744559742 0.100874047231148 0.0769031296272803
AT1G10660_at 6.75915657178891 7.04339965335767 7.30888195613368 7.65649930149642 8.2926526852915 7.01729775456397 6.9869807803324 6.47816495219051 5.43083513552120 5.76027963065951 5.1700564975491 5.08466942360127 5.91219725053234 5.37753913171733 4.45108426389805 5.74375695195306 6.30791257802311 5.2302779420359 6.18140362114162 0.278655856267457 0.276321869124499 0.278233818963823 0.272758415350556 0.280244531179891 0.292140535090366 0.279171375624964 0.280733160628923 0.281172521663133 0.276733335154190 0.281443557051734 0.2782838527049 0.275905247557500 0.279767959066762 0.281122731891969 0.272758415350556 0.274891119011883 0.273881018094202 0.272758415350556 1 1|0 +|/ 3533627 3534755 3534345.5 3532429 3535132 + gene protein_coding_gene FALSE TRUE AT1G10660.1|AT1G10660.2|AT1G10660.3|AT1G10660.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62960.1); similar to hypothetical protein MtrDRAFT_AC124952g40v1 [Medicago truncatula] (GB:ABE93571.1) 0.185377363713508 1.0785275864159 0.304126647749721 1 -0.052590716657807 12.7931423155717 0.185377363713508 0.250005939965518
AT4G26390_at 1.98836394078067 2.11644660162086 2.41481772610652 2.57958518656333 2.52142549045802 2.28883033633181 2.2703744299347 2.29906382521064 2.35823241567108 2.55680279920219 2.34421689123715 2.34206391553919 2.01698766004968 2.4044531959433 2.57607823270515 2.20942942097249 2.33125008113723 2.84108697994527 2.51643389628141 0.191647530099761 0.179187165800697 0.182140221554285 0.188249778423286 0.180687548091072 0.183407230088312 0.185555013837826 0.181074582599288 0.194601426867687 0.184239166235505 0.186087860588269 0.179710009389383 0.190344805148883 0.178984124959882 0.183995063447611 0.178902892465765 0.193841626854248 0.183206418760541 0.181355961372274 4 4 + 13343852 13344374 13344133.273 13342216 13344427 + gene protein_coding_gene FALSE TRUE AT4G26390.1 pyruvate kinase, putative Identical to Probable pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK) [Arabidopsis Thaliana] (GB:O65595); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63680.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G56350.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G08570.1); similar to pyruvate kinase [Glycine max] (GB:CAI53675.1); similar to Pyruvate kinase [Medicago truncatula] (GB:ABE78303.1); similar to Pyruvate kinase, cytosolic isozyme (PK) (GB:Q42954); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) 0.0943209561422467 1.07837703287069 0.304190867206670 1 -0.0527381407888089 4.74003952591386 0.0943209561422467 0.0543063819509724
AT3G44320_at 3.73278424289253 4.01799807494085 4.07036299149415 4.17591122841193 3.49719701170015 3.30732600727497 3.89463721677700 4.42950764105966 4.26100327348075 4.1567375913914 4.174124790284 4.13765424847111 4.33265227341321 4.36794542954493 3.74053648300099 3.92236433864348 3.75766149937659 4.52317253960029 3.85529531617365 0.229509195842238 0.228393286499052 0.208659673634545 0.216933076150569 0.208562008243656 0.219256446320557 0.21670665120736 0.214593249723572 0.226494736756818 0.215664827169018 0.214732839675518 0.208562008243656 0.212254398606661 0.216614987679035 0.219304730020745 0.208562008243656 0.230395434481056 0.222921200420947 0.226273029741204 3 3 + 16005709 16006423 16006059.545 16004366 16006798 + gene protein_coding_gene FALSE TRUE AT3G44320.1 NIT3 (NITRILASE 3) Nitrilase (nitrile aminohydrolase ,EC 3.5.5.1) catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA). It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. Identical to Nitrilase 3 (EC 3.5.5.1) (NIT3) [Arabidopsis Thaliana] (GB:P46010;GB:O04909); similar to NIT1 (NITRILASE 1) [Arabidopsis thaliana] (TAIR:AT3G44310.3); similar to nitrilase 2 (GB:AAB05220.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010); contains InterPro domain Nitrilase/cyanide hydratase; (InterPro:IPR000132) -0.113765297126993 -1.07831984399532 0.304215264137078 1 -0.0527941366638822 7.99597855713912 -0.113765297126993 0.111432252261483
AT1G65510_at 2.33708506677514 3.20478560813992 2.65394865329831 2.49517895499397 2.53454585484615 2.54683603024405 2.02995096196418 1.90867306251532 2.13159888543115 2.19389633738359 2.28636018737146 2.29236318103830 2.32998317587923 2.35095800158663 2.4723192852878 2.33325243896085 2.08951145253058 2.36424418385702 2.38150265557911 0.219734119795668 0.217063855995805 0.217542081989657 0.217512902963083 0.218315700759270 0.220694778555882 0.212376816356161 0.212368392681758 0.217772911112311 0.224568941561653 0.214738800500950 0.216565005928915 0.217310584195332 0.211729636425769 0.215226338256893 0.210819120350695 0.223114495547747 0.212741420398732 0.213040357544265 1 1|0 +|/ 24363134 24363463 24363297.6 24363116 24363744 + gene protein_coding_gene FALSE TRUE AT1G65510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65490.1) 0.133355863673173 1.07825868897082 0.304241354679727 1 -0.052854013350575 4.73914549798643 0.133355863673173 0.154103348833562
AT1G14960_at 1.83012446283289 1.56969194782339 1.45642467578229 1.93627287991440 1.48849996554876 1.33034129176048 1.63132293697257 1.83141971135846 1.76103695089771 1.96080323142759 2.02455855504484 1.98123688655514 1.81299985449347 1.83915282739876 1.81504338595099 1.58909851092513 1.38094375992976 1.81940736327833 1.80283999922666 0.217346606292244 0.216597230336790 0.215101706408192 0.221484309155446 0.219543230573708 0.218169622410214 0.219361868511588 0.212688802377456 0.218903060539487 0.214162575424786 0.217481271335139 0.213973657434059 0.213764384116016 0.215089044946768 0.215164763169475 0.213374397745420 0.217575345086323 0.223120734152381 0.234744732385215 1 1|0 -|/ 5159331 5159944 5159560.6 5159194 5160078 - gene protein_coding_gene FALSE TRUE AT1G14960.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT1G14950.1); similar to major latex protein homologue [Datisca glomerata] (GB:CAD33533.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.110754989532807 -1.07758595197174 0.304528476221894 1 -0.053512510516135 3.44644483573134 -0.110754989532807 0.104283532896504
AT1G19835_at 8.50062070095874 8.84104030256312 8.76942099323034 8.77838251417569 9.22459368957051 9.23486874694395 9.04549408098861 8.94381643255132 9.66270081745906 9.72620587942675 10.2765983586414 9.82586479765788 9.70152590152654 9.45370003445124 9.48365139180329 9.71859025440488 9.55231976181595 9.62969948117353 9.65755600946453 0.112132870121448 0.113776106919455 0.110083406944586 0.112313705311975 0.115132203043647 0.112268918251574 0.117537307095092 0.111552342435335 0.111881644970146 0.115519160725072 0.111572366315841 0.116271018908493 0.11542157767535 0.113471756162310 0.112299212641640 0.108675805133891 0.117750072124624 0.115639751041398 0.111709992974365 1 1 - 6856217 6856688 6856393.818 6855943 6860323 - gene protein_coding_gene FALSE TRUE AT1G19835.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47900.1); similar to Putative myosin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL77142.1); similar to Os03g0246500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049544.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) 0.0960815594744509 1.07707203840825 0.304747950942440 1 -0.0540153268151955 18.61097867419 0.0960815594744509 0.0615281091041476
AT1G65650_at 7.33335615527789 7.22383120908486 7.33456085111452 7.19875525353096 7.34738261881536 7.47632755403246 7.165310611555 7.00946842529046 6.5243863862601 6.29073186884434 6.50825313573761 6.37567947064352 6.09184265579241 6.3497136662396 6.82555612181217 6.45254525843292 6.71564853501017 6.08379955434534 6.37579499842352 0.190994729547503 0.190606865937663 0.188425968599677 0.189928941656111 0.198067931342512 0.193925827466918 0.192988711720538 0.191679008579231 0.205460382875819 0.199865804799462 0.203308934150340 0.18787502165175 0.190629682633226 0.200505795594718 0.198066032015352 0.190431488046222 0.199703951054387 0.192777280911963 0.193844600999192 1 1 - 24418897 24419400 24419154.364 24418678 24421372 - gene protein_coding_gene FALSE TRUE AT1G65650.1 ubiquitin carboxyl-terminal hydrolase family 1 protein similar to ubiquitin carboxyl-terminal hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G16310.1); similar to ubitquitin C-terminal hydrolase [Chlamydomonas reinhardtii] (GB:AAT02518.1); similar to Os02g0180100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046089.1); similar to Os02g0822200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048557.1); contains InterPro domain Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; (InterPro:IPR001578) 0.0923368421568336 1.07691990289708 0.304812945761408 1 -0.0541641407263954 13.6722995269682 0.0923368421568336 0.0462261554914015
AT4G31670_at 6.66004569249677 6.70604949941048 6.79969521764661 6.51474123356209 6.7392653158387 6.82365642537716 6.44195488316214 6.0777469495025 6.11187717710596 6.54182750445213 6.10543710960602 5.8835092604356 5.88111287190244 5.92905117072106 5.6875292072265 6.19300037783085 5.95430833635742 5.81681845921157 6.49766942853948 0.216380955487107 0.216898510932627 0.215174958189195 0.234731918221195 0.214773412480751 0.224816573868106 0.216055848345637 0.229701887866726 0.242425381757459 0.217009440113091 0.223729347373079 0.221247191934776 0.236181112318605 0.214125829834427 0.215042292860017 0.213830106175891 0.217192380360157 0.219607166568509 0.219413482367469 4 0|4 /|- 15336015 15336455 15336182.9 15335873 15339597 - gene protein_coding_gene FALSE TRUE AT4G31670.1 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT2G24640.1); similar to putative ubiquitin-specific protease 15 [Oryza sativa (japonica cultivar-group)] (GB:BAD37420.1); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.10227761445396 -1.07678194968442 0.304871890751168 1 -0.0542990675894639 12.7529630117215 -0.10227761445396 0.0817368525753726
AT4G26650_at 5.72418927166631 5.82546554395985 4.98340769498843 5.33553156779963 5.13747740216455 5.76982999567898 6.08875370222474 6.0259398232614 5.53034532527871 5.20489899587463 6.289578492361 6.27912911191169 5.87087422015852 6.23623982008064 5.98905024333661 5.87050592645215 5.87502911376748 5.55536892151038 4.70137992761556 0.222864270890223 0.213290431458774 0.22957014756885 0.225968860329524 0.212793483459832 0.222358266974545 0.221066290966083 0.209998916922641 0.227199079132907 0.232761346793459 0.212248262282677 0.210955657787887 0.212909014953078 0.225470751554473 0.223031908638718 0.213426852012626 0.220703288481846 0.212660656324605 0.212135968613445 4 4 + 13446912 13447420 13447194 13444856 13448218 + gene protein_coding_gene FALSE TRUE AT4G26650.1|AT4G26650.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55550.1); similar to Os07g0584500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060120.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.120327572410417 1.07668611788495 0.304912843085399 1 -0.0543927890191025 11.1819560739448 0.120327572410417 0.126940460812476
AT1G23420_at 1.30354221205259 1.64015600479412 1.93416584259765 1.76688413323237 1.49638951410263 1.44052877554976 1.71954872702843 1.4056428617096 1.56781886131962 1.60446043219246 1.99273053828698 1.32859030877110 1.55982566234556 1.36710352214990 1.45526540133973 1.23609662896281 1.8288454118878 1.36734027232588 1.18448147896284 0.217440415810977 0.219940893959745 0.224434049427146 0.217987558954538 0.217440415810977 0.217440415810977 0.222886998638276 0.220160506999800 0.234099208883228 0.220400385549875 0.222179731628102 0.217440415810977 0.223360907761276 0.217440415810977 0.228653535041621 0.230792856322634 0.230874049175338 0.231085880467157 0.219430701899389 1 1|0 +|/ 8317640 8318481 8317970.7 8317385 8319472 + gene protein_coding_gene FALSE TRUE AT1G23420.1 INO (INNER NO OUTER); transcription factor Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. Identical to Axial regulator YABBY4 (Protein INNER NO OUTER) (YAB4) [Arabidopsis Thaliana] (GB:Q9LDT3;GB:Q9SE21); similar to YAB2 (YABBY 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G08465.1); similar to inner no outer [Impatiens niamniamensis] (GB:AAT42250.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.103495371204084 1.07663184111574 0.304936039327765 1 -0.0544458675959258 3.07297141342524 0.103495371204084 0.0852984542263936
AT1G49940_at 2.18888499865343 2.37852202569304 2.60091224861329 2.54383239859582 1.87052866627058 2.40748452062275 2.12273421112773 2.37509942832482 2.26311834738247 2.53316848988794 2.35123883192124 2.37939055341474 2.50329418420600 2.40001305349082 2.27271674737031 1.93635835520521 2.46409758174179 2.42404508481901 1.82258448522733 0.205779300434758 0.201351190350753 0.202620911175684 0.199990124423335 0.201656431452959 0.199990124423335 0.211580946816268 0.206368089661781 0.208897957674182 0.208740427866565 0.199990124423335 0.205732902871289 0.210284734895253 0.204401579303473 0.207900114383816 0.199990124423335 0.210531719095984 0.203844690185455 0.213119606246981 1 0|1 /|- 18492330 18494195 18493230.714 18492185 18494488 - gene protein_coding_gene FALSE TRUE AT1G49940.1 similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT1G04770.1) 0.112241575382209 1.07640364063776 0.305033579914570 1 -0.0546690072199149 4.58484218216454 0.112241575382209 0.108242905275097
AT2G35000_at 1.3849472133086 1.34930128131478 1.14263110527769 1.19498223833063 1.00255873603257 1.02252405127887 0.966472842077107 1.13627109612891 1.11077021664059 1.15568900844353 1.29459446479200 1.0018302672214 1.08596780045315 0.826314177040252 1.28901725450957 0.79431500140451 1.37255882163761 1.22401204568706 1.24875309439619 0.184377240676473 0.187054694700105 0.192346927490463 0.186048145586622 0.186076621452667 0.182898326837495 0.193046320768884 0.182712534796171 0.190984460668242 0.191561014756063 0.181844327595247 0.18600467958561 0.186153013726576 0.190479449649153 0.185991914506884 0.182611356608902 0.186761563646634 0.19434198957987 0.198133242511707 2 2 - 14758896 14759353 14759122.182 14758653 14760398 - gene protein_coding_gene FALSE TRUE AT2G35000.1 zinc finger (C3HC4-type RING finger) family protein E3 ligase-like protein induced by chitin oligomers. Identical to RING-H2 finger protein ATL2G precursor (RING-H2 finger protein ATL9) (ATL2G) [Arabidopsis Thaliana] (GB:O64763); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G35330.1); similar to RING/C3HC4/PHD zinc finger-like protein [Cucumis melo] (GB:AAO45753.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0896176431054915 -1.07637246963874 0.305046905287240 1 -0.0546994840237395 2.29136790492863 -0.0896176431054915 0.0315516832394413
AT2G33460_at 3.25447909784395 3.19703286137902 3.39751473709835 3.20606256966098 2.76604479778708 3.18712977400628 2.94538238769631 2.97660805388349 3.72486542580802 2.99967407060621 3.26900577144677 3.21970892935401 3.79576441064876 3.20923665965397 3.59340384895532 3.37005219989381 3.18812914540319 2.90193687973975 2.75651528589538 0.224023097963406 0.242624960426353 0.220821047942455 0.227006591278635 0.220563250862837 0.223972402684340 0.221232208276500 0.22825863817084 0.22174052475297 0.230069214995129 0.222246873173759 0.217019333617047 0.232715321538222 0.235622590859986 0.227378536948324 0.225330545880584 0.227997131614989 0.230477613814538 0.231487589519138 2 2 - 14181761 14182064 14181916.727 14181666 14182914 - gene protein_coding_gene FALSE TRUE AT2G33460.1 RIC1 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 1) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC3(family subgroup III). RIC1 is localized to the apical region of the plasma membrane in pollen tube and mutation analyses indicate that this localization is dependent on ROP1 binding. Gene is expressed in all tissues examined.Analysis of overexpression and loss of function mutants indicates a role in cortical microtubule organization during pavement cell morphogenesis. similar to RIC3 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT1G04450.1); similar to desiccation-associated protein [Lilium lon (GB:AAQ05795.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026) 0.101932752985613 1.07633620154739 0.305062410184693 1 -0.0547349435248022 6.35565994728951 0.101932752985613 0.0808447976539234
AT1G47210_at 2.81242260711804 2.80426561022854 3.20804774581423 3.03754211494427 2.56950203968832 2.42892677891072 3.64321383102251 2.99203258290887 2.22411709824819 2.84811197555300 2.75440632448594 3.30262467548544 3.3039767959628 2.53268722160614 3.26172771928555 3.20985499896092 2.81272771370373 2.99527556326305 2.53634747393302 0.213574234330867 0.209231751870836 0.211787935601172 0.212490556598744 0.209374503013805 0.215645335547549 0.220568623403531 0.209655915302871 0.221326234369544 0.208967853748053 0.209529901452633 0.209876950853675 0.221779385366556 0.208967853748053 0.217592232906879 0.210875965451032 0.220805295412075 0.211012012150792 0.209597545189526 1 1 + 17303574 17304109 17303819.182 17303391 17305306 + gene protein_coding_gene FALSE TRUE AT1G47210.1|AT1G47210.2 CYCA3;2; cyclin-dependent protein kinase similar to CYCA3,1 (CYCLIN A3,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G43080.1); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028)|similar to CYCA3,4, cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G47230.1); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.116744478018011 1.07596458315488 0.305221314419075 1 -0.0550982222103867 5.71592031841557 0.116744478018011 0.119010426920123
AT1G09170_at 1.04790534387491 1.01145493208409 1.15271579381977 0.740848374220829 0.724200082527785 0.899878939205548 1.23652371636966 0.883319287229492 1.64777584867681 0.845388395470076 1.76567707751231 0.803738701793266 0.897780750300222 1.41291401205722 0.911435639349158 0.967694200825412 1.20627743510113 0.956383036720808 1.00708549116109 0.227961647309329 0.225334831472956 0.227048756143311 0.220220927172523 0.220688640428547 0.226270423618880 0.220904060901601 0.230262751023427 0.224436584907726 0.231995978529777 0.222482316791705 0.238852334843547 0.227907969079551 0.223227771675654 0.233582458604975 0.227831546156221 0.222732689820862 0.220220927172523 0.223261880895204 1 1 - 2956640 2957246 2956898.6 2956591 2962209 - gene protein_coding_gene FALSE TRUE AT1G09170.1 kinesin motor protein-related similar to microtubule motor [Arabidopsis thaliana] (TAIR:AT2G47500.1); similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to Kinesin-4, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95490.1); similar to Calponin-like actin-binding; Kinesin, motor re (GB:ABE84966.1); similar to kinesin [Gossypium hirsutum] (GB:AAW03152.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) -0.108451163753970 -1.07586138258410 0.305265454168016 1 -0.05519908916157 2.10309956790489 -0.108451163753970 0.0988958322302917
AT3G07690_at 3.46826485319396 3.91979427104137 3.47365695632909 3.26536945610878 4.11662012028581 3.44866562485566 3.32241310623506 2.75119618931926 3.43817696745211 3.11863629680787 2.65521196415504 2.89361095501487 2.75936227172771 3.27857642990036 2.96224790335088 2.95272290315145 2.56294409020096 2.86139820529650 3.53344278869152 0.193164109195067 0.202706918831259 0.195602288651051 0.196029899430098 0.200885651759472 0.208517342852966 0.206481029807349 0.205103035175927 0.203888891213511 0.198937856255848 0.197319802729909 0.193164109195067 0.197790912372014 0.19634108225423 0.202111900710356 0.194541704895455 0.201153781074035 0.205099701273430 0.195233982318837 3 3 + 2458466 2459351 2458982.182 2457114 2459558 + gene protein_coding_gene FALSE TRUE AT3G07690.1 glycerol-3-phosphate dehydrogenase (NAD+) similar to GPDHC1, glycerol-3-phosphate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT2G41540.3); similar to Os01g0939600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045350.1); similar to putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:AAU44049.1); similar to putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:BAB90253.1); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase; (InterPro:IPR006168); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; (InterPro:IPR011128); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; (InterPro:IPR006109) -0.143499204760012 -1.07580602443115 0.305289133307122 1 -0.0552531923708117 6.58533658450457 -0.143499204760012 0.174752178908363
AT3G04310_at 5.4235872336576 5.53568931429755 5.32675860960891 5.75055174440406 5.94736004922794 5.78230720520181 6.0523102320151 6.27106199552661 5.74888925068551 4.97942293429409 5.4541850221207 5.29130398230794 5.53669648290306 5.47532513640452 4.73111752908019 5.3329798015625 5.24153665661235 5.18000792054479 5.38523972067826 0.26621656324071 0.267823815451556 0.272862069180461 0.26621656324071 0.269802023056336 0.278401048434736 0.271653012081736 0.270538524306442 0.275916197802136 0.272058628167234 0.268472047092058 0.270259135163387 0.266885021366356 0.271598817627255 0.26621656324071 0.26621656324071 0.286185020960462 0.274958796536948 0.273067889775463 3 3 - 1141606 1142241 1141890.545 1141588 1142535 - gene protein_coding_gene FALSE TRUE AT3G04310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33250.1); similar to Os01g0680600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043873.1) -0.104853846937074 -1.07530144581347 0.305505028139347 1 -0.0557462307202041 11.0869923154898 -0.104853846937074 0.0894647879238816
AT2G31690_at 0.479000004658229 0.304774999082092 0.268719338664365 0.643522834410695 0.197549818255219 0.201074723495549 0.474626114520946 0.291012331940595 0.613540567012326 0.0411981862287512 0.0554209453586585 0.398916363386228 0.56917192996299 -0.042803572386177 -0.0538904417393538 0.358974939656105 0.232796574950873 0.241152272262517 0.432082275159528 0.188486130050113 0.188904699377781 0.191007018507906 0.195486520688620 0.188486130050113 0.190289298903523 0.191568908692664 0.188929397331364 0.203631622283544 0.200912612202127 0.191412705620209 0.194560235250510 0.193841290507917 0.188486130050113 0.196936181156248 0.198292039052546 0.200446851886854 0.189087513226253 0.192849355268003 2 2 - 13483188 13483732 13483482.545 13483170 13484624 - gene protein_coding_gene FALSE TRUE AT2G31690.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G05800.1); similar to Lipase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96672.1); similar to Os11g0299300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067729.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.100971491773032 -1.07525422473798 0.305525238611509 1 -0.0557923624167979 0.648655546910969 -0.100971491773032 0.0782694045374768
AT4G16170_at 6.8604196691118 6.89435962657501 6.63140086362439 6.37151408130404 7.1080665099757 6.91215842273518 6.7900483949593 6.52442070669673 6.6916336002809 6.21653643262272 6.48043760315957 6.28308934982038 6.39317451193299 6.28288107330921 6.43273407193526 6.05665585072928 6.19128982039697 6.1053545531692 6.48728647316487 0.175290722628141 0.172557537592582 0.18049556535959 0.186438541915422 0.173444359503309 0.168512181895368 0.170403692005268 0.169005236239137 0.169962989329130 0.178320233807285 0.175719124400816 0.175877363049790 0.175600136122549 0.173762242296737 0.185614969219689 0.175164403225791 0.187690337441472 0.184986546927860 0.180681827628890 4 4 - 9165399 9166273 9165839.545 9165289 9167452 - gene protein_coding_gene FALSE TRUE AT4G16170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28720.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95572.1) -0.0992385971543854 -1.07502502072312 0.305623351601058 1 -0.0560162559360402 13.1332256708708 -0.0992385971543854 0.0729361475022229
AT1G13230_at 1.17736651701228 1.20305990805773 1.49474037745998 1.20637544924416 1.20112855876774 1.44338028269226 1.33109548476504 1.04009711595431 1.42563643109437 1.23335423275203 1.15670477970563 1.22999374784073 1.43366885382615 1.31013974895181 1.45941757495931 1.49680077585095 1.24183635678179 1.65797857080955 1.29232697373981 0.191920823792859 0.193228878247909 0.183331678727686 0.183687367771083 0.183014253161766 0.193813954125454 0.185248608528604 0.184689023597542 0.188142103609885 0.185177427841434 0.186638068940800 0.197512108738148 0.182490578638287 0.185408251921894 0.183948869111362 0.183758605559216 0.190463765983141 0.190266632347083 0.18629003332949 1 1 + 4521846 4522396 4522107.182 4520628 4522541 + gene protein_coding_gene FALSE TRUE AT1G13230.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G25670.1); similar to unnamed protein product; contains similarity to elicitor-inducible receptor EIR gene_id:T5M7.12 [Medicago truncatula] (GB:ABE90677.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.102356541244515 1.07492990628316 0.305664073261145 1 -0.0561091555329831 2.60736717688726 0.102356541244515 0.0824838202486118
AT2G31240_at 5.12759948136498 5.35258920862065 5.29792159240209 5.13766245194512 4.63500690450951 4.89649849704698 5.6043691674088 5.18111670924582 4.33322757944953 4.39732589063193 4.51973295603213 4.32903224639663 4.69830705144136 4.32445695443267 4.66309255964093 4.49507565487865 5.00946459598038 4.63243543757454 4.69648345283936 0.219475222263584 0.217373169771207 0.221286325805351 0.214201379318948 0.216463165820049 0.225903290615121 0.217262627468748 0.221623672856486 0.223825638247939 0.217689709897609 0.21305309205073 0.211025989091557 0.220635371902297 0.216189694776926 0.216672451567468 0.210503432928400 0.215621603668107 0.220677327930794 0.214208425194698 2 2 - 13324813 13325286 13325063.273 13324492 13326637 - gene protein_coding_gene FALSE TRUE AT2G31240.1 tetratricopeptide repeat (TPR)-containing protein similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT4G10840.1); similar to Os02g0820300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048541.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN87741.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.108187786221958 -1.07485450273218 0.305696358953629 1 -0.0561827985998314 9.68390982974505 -0.108187786221958 0.0984776631883522
AT4G11745_at 1.83081603939216 1.88877787866789 2.26641523149296 2.35437791587895 1.72031438865860 1.7188285802562 2.06115668853038 1.87757966410354 1.89227468606316 2.44481641791329 2.17829518778733 1.81439513245128 1.82240091766539 1.90007668764182 1.84560133749213 2.03234765868288 2.50525458086967 2.32947381008236 2.66633602471843 0.163316284165717 0.167145341904526 0.172403440591983 0.162084827131444 0.171473965637605 0.166776497851554 0.163936040811693 0.168495883202500 0.163548438852881 0.167348213555437 0.166919520669577 0.163745750561240 0.167174018699741 0.165515576893975 0.164526483978819 0.162084827131444 0.164532019092560 0.169510710199315 0.169379564972501 4 4 - 7075850 7076194 7076051.4 7075820 7076674 - gene protein_coding_gene FALSE TRUE AT4G11745.1 kelch repeat-containing protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G11770.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.090296792041333 -1.07471045732079 0.305758042352175 1 -0.0563234695265085 4.15876148519712 -0.090296792041333 0.0366286620779142
AT4G29390_at 9.93232116186286 9.95195048140382 9.83092838070344 9.74363428513384 9.89211103333625 9.7660253457789 9.76408919239563 10.0841883663875 9.76889783512745 9.51360803077134 9.62281067350298 9.65362680743818 9.67181962380731 9.66189486946637 9.71740153779764 9.6793346541366 9.3883097249154 9.20175070443756 9.64165324610696 0.089107222031524 0.0901196637569397 0.0955178714545824 0.0908637083260357 0.0932091907264156 0.0904250196088588 0.0872202448681457 0.0890792060359323 0.101234618161604 0.0929973479582985 0.0965345117488295 0.0904655165880165 0.0895045176112743 0.09365222724077 0.0898319987529718 0.0873352471714806 0.092053287649832 0.0967484930191316 0.0864882835023845 4 4|0 -|/ 14465649 14465757 14465688.778 14464993 14465989 - gene protein_coding_gene FALSE TRUE AT4G29390.1 40S ribosomal protein S30 (RPS30B) Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal protein S30 (RPS30C) [Arabidopsis thaliana] (TAIR:AT5G56670.1); similar to Ribosomal protein S30 [Medicago truncatula] (GB:ABE80883.1); similar to Os06g0172600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056941.1); contains InterPro domain Ribosomal protein S30; (InterPro:IPR006846) -0.0958651677525895 -1.07467832043187 0.3057718053577 1 -0.0563548515201694 19.4786585034285 -0.0958651677525895 0.0615176229767522
AT2G30520_at 10.4822249959055 10.8499753860422 10.9726746084746 11.1592147900536 11.7304631608699 11.3017574312340 11.9777593274080 11.7791873547147 11.4367112357048 11.0681558436938 11.4397384067808 11.4298378551050 11.7358420467509 11.4071628642754 11.0337274196208 11.7413082184406 11.3911611472213 11.2828427900054 11.1764948981123 0.0897363779806548 0.0877442726760553 0.0904974954842242 0.0913960618979663 0.0920117146790963 0.0925902314289727 0.0913966437675813 0.0909602574082595 0.0925293513306952 0.0936512143801481 0.0890168972765888 0.0877789159662134 0.0884190185646768 0.089521756566196 0.0905908059489798 0.0876359331819891 0.0923326129797827 0.0908286123390146 0.0909716762249584 2 2|0 -|/ 13010061 13012594 13011113.3 13009819 13012677 - gene protein_coding_gene FALSE TRUE AT2G30520.1|AT2G30520.2|AT2G30520.3 RPT2 (ROOT PHOTOTROPISM 2); protein binding|RPT2 (ROOT PHOTOTROPISM 2) light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;GB:Q93VA6;GB:Q9M6N8); similar to signal transducer [Arabidopsis thaliana] (TAIR:AT5G67385.1); similar to BTB/POZ; NPH3 [Medicago truncatula] (GB:ABE77699.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;GB:Q93VA6;GB:Q9M6N8); similar to signal transducer [Arabidopsis thaliana] (TAIR:AT5G67385.1); similar to BTB/POZ; NPH3 [Medicago truncatula] (GB:ABE77699.1); contains InterPro domain NPH3; (InterPro:IPR004249) 0.112161332997563 1.07453206949530 0.305834444990192 1 -0.0564976576258286 22.6115687581855 0.112161332997563 0.108522939768938
AT1G28430_at 1.91939793814772 1.93763725594026 1.82297701411653 1.84442669934952 1.89188013381252 1.81992120339147 1.54974015701256 1.75631708987492 2.22975831848130 1.85534201760707 2.47155109416813 2.37106936840547 2.54536168671494 2.20254029224193 2.33113451741543 1.88377074686109 1.95579532473630 2.07637220196395 2.22300398246909 0.208634761850632 0.210012724105629 0.220400933110330 0.212099880890371 0.216797743841463 0.209119072882089 0.214385512001161 0.226124787300781 0.210032534629929 0.210913695318333 0.210203235364802 0.222017068170498 0.212035275273856 0.208582896202943 0.212143402498419 0.208234604530297 0.214092251344676 0.218118592144053 0.210768958015518 1 1 - 9992980 9993460 9993260.455 9992972 9994628 - gene protein_coding_gene FALSE TRUE AT1G28430.1 CYP705A24 (cytochrome P450, family 705, subfamily A, polypeptide 24); oxygen binding member of CYP705A similar to CYP705A1 (cytochrome P450, family 705, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15330.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94648.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0905130584839479 1.07406890379065 0.306032884114426 1 -0.0569498121239517 3.98398760824697 0.0905130584839479 0.0381682167467044
AT2G36560_at 0.459494061945824 0.875708974436425 1.06065226751576 0.801592843351074 0.887111854048104 0.863186628280647 0.980125510171598 0.55399047988601 1.52558660137524 0.920761530794705 1.26721647473978 1.26175025146480 1.33240158875171 1.18818939167212 1.13323290571987 0.916468353467604 1.67549908765156 0.956204295591303 1.07778339409116 0.226786214696176 0.226093563226554 0.235861706231197 0.2241196040401 0.226496626267228 0.225228542668381 0.221218565792152 0.232960218073155 0.230930306647502 0.221218565792152 0.226414504775498 0.233130721279788 0.231883398973395 0.221218565792152 0.234699974644505 0.238385053396063 0.227648369338673 0.241666282696985 0.225019991690021 2 2 - 15336290 15336826 15336549.455 15336222 15339526 - gene protein_coding_gene FALSE TRUE AT2G36560.1 DNA-binding protein-related similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G62260.1); similar to Os08g0512400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062218.1); similar to putative AT-hook DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10063.1); similar to putative AT-hook DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10062.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.113732963283789 1.07383396561722 0.306133578496787 1 -0.0571791058286593 2.00577322864745 0.113732963283789 0.112486878512159
AT4G14430_at 6.31943928974149 6.29632190276328 6.49980300588117 6.5469810889592 6.73960971136871 6.05216110625293 6.14356037638297 6.21439349140066 5.91313653367677 6.39303300707864 6.03735137395366 6.11216202482123 5.94403575643146 5.8578035043567 6.48073599844478 6.59414436118174 6.08873010947131 5.70000232195037 5.94661878803181 0.186861235817779 0.190780596181585 0.197908043293149 0.201018029058715 0.192729774811504 0.19886712923641 0.198444689363 0.192535856789545 0.197003891750833 0.18718242789522 0.190344985132154 0.189158156705084 0.188731953579323 0.193207618881793 0.191834679585227 0.18502538833492 0.193448217648241 0.203820104312042 0.186651099388018 4 4 - 8304981 8305455 8305225.727 8304596 8305701 - gene protein_coding_gene FALSE TRUE AT4G14430.1 enoyl-CoA hydratase/isomerase family protein similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14440.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.116908934053701 1.07375846989363 0.306165941250958 1 -0.0572527792960551 12.4446004753882 0.116908934053701 0.119941127589390
AT3G62380_at 0.651317024133845 0.938098324893877 0.632963584918522 0.774717228763753 0.80613534357022 0.794605759149519 0.60997533265882 0.671526079880952 1.19361818006178 0.95592592879765 1.13600216721789 0.410532369504811 0.910582869139996 0.722424927366439 0.8035518014803 0.681125291995472 1.11633841262087 0.70160334559902 0.95076950273948 0.193479233779273 0.197602048017158 0.198939120152189 0.196952895524381 0.193747386216344 0.192988040818551 0.202273542605897 0.197820242760675 0.198169974819921 0.201394623900537 0.198028643125771 0.195772378934085 0.200340893456668 0.205974531786264 0.201065593547232 0.194436471330404 0.195789937768224 0.197565495410032 0.199852271219290 3 3 - 23094612 23095056 23094852.818 23094498 23095976 - gene protein_coding_gene FALSE TRUE AT3G62380.1 similar to S locus F-box-related / SLF-related [Arabidopsis thaliana] (TAIR:AT1G71320.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0943957168543703 -1.07323907669852 0.306388659760325 1 -0.0577595244177531 1.65677134407047 -0.0943957168543703 0.0564113175657532
AT1G20700_at 1.3483498639147 1.69675230251887 1.41510598770985 1.51572937033337 1.25002033082849 1.76413133257868 1.23119288530001 1.03380848047059 2.15909188267332 1.65081045202268 1.96191706548407 1.83038139388173 2.00810571941426 1.66453097728887 1.65075856906151 1.67990607753457 1.97672983869206 1.97406631050638 1.51011798896053 0.201360432631038 0.197832050230915 0.195785914536035 0.199339384695664 0.195933334282646 0.214087248007793 0.196103842495349 0.199015966714628 0.202648039560429 0.206120203932675 0.193118233991787 0.193966693059688 0.197016893531147 0.196388465953852 0.199562510971248 0.193118233991787 0.201035863698936 0.197656639733275 0.198691471085596 1 1 + 7182655 7183693 7183272.364 7182548 7183999 + gene protein_coding_gene FALSE TRUE AT1G20700.1 homeobox-leucine zipper family protein Identical to WUSCHEL-related homeobox 14 (Homeodomain protein PALE-2) (AtPALE2) (WOX14) [Arabidopsis Thaliana] (GB:Q9LM84); similar to homeobox-leucine zipper family protein [Arabidopsis thaliana] (TAIR:AT1G20710.1); similar to HB1 homeodomain protein [Populus tremula x Populus tremuloides] (GB:CAA09366.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.114340129204488 1.07312473617308 0.306437706040836 1 -0.0578710544422981 3.21520612014104 0.114340129204488 0.114108530347795
AT1G04500_at 0.975534853748843 0.994186577267147 1.58271046585627 1.54084991413282 0.532402330762153 1.54986171149263 1.15531153737890 1.01560402757227 0.936715404928015 1.18275797516979 1.32933185503380 0.89685319755441 1.33797128660007 0.847385357044284 1.29868593205777 0.981249489515133 1.26566050878310 1.53930486222517 1.37214285361299 0.197398042656189 0.20448145688675 0.213711162683882 0.202808435124622 0.206650720823335 0.213819547828466 0.200117392438515 0.197398042656189 0.211059908140350 0.202932496942065 0.197398042656189 0.197398042656189 0.217707530207235 0.199566376931301 0.197969045775301 0.199709310104068 0.202799660030899 0.203939608736141 0.201234055246232 1 1|0 -|/ 1221975 1222660 1222379.1 1221432 1224365 - gene protein_coding_gene FALSE TRUE AT1G04500.1 zinc finger CONSTANS-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33350.2); similar to CCT motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93890.1); contains InterPro domain CCT; (InterPro:IPR010402) 0.144740044883648 1.07285517066361 0.306553359479208 1 -0.0581339566918673 2.34377137177904 0.144740044883648 0.177905073892466
AT1G69100_at 1.37244195782561 1.72832190805499 1.65227265952003 1.99216320044955 1.44425886570366 1.82949447278113 1.93270812417170 1.38240974058695 1.64933579641695 1.27528060838080 1.90215890824118 1.61277797221812 2.12223535155183 1.46879406693819 1.61187842014313 1.80315612266700 1.71300364301313 1.71727342214282 1.91702986674806 0.195613189045891 0.188605452119738 0.188769227690495 0.205488444713816 0.194060781394789 0.193366837288915 0.202004904998506 0.188290013314497 0.203834705411099 0.187838614905770 0.193229796080935 0.195758569706685 0.191905363138505 0.188263621123211 0.185393097291308 0.187532413809073 0.19225044558854 0.209494146680702 0.185393097291308 1 1|0 +|/ 25984211 25985065 25984693 25983662 25985099 + gene protein_coding_gene FALSE TRUE AT1G69100.1 pepsin A similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G22050.1); similar to cathepsin D-like aspartic protease [Opisthorchis viverrini] (GB:AAZ39883.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.127802257401468 1.07249494980710 0.306707958933099 1 -0.05848519161087 3.34565478057655 0.127802257401468 0.144104864354281
AT4G34450_at 10.0194670589767 9.99792928477374 9.92312947973967 9.88175127322052 10.0926067299443 9.87638425284043 9.90360800940142 9.8709012004433 9.8031789530584 10.0094238877303 10.3598055464929 10.3000747714619 10.0305763565816 10.0469054980606 10.178037946332 10.0136683116556 9.84351568956565 10.0201534389662 9.92838102332808 0.0940576341048099 0.0898156723711688 0.0923559280931716 0.0927793641966607 0.0906056674761866 0.089300507382542 0.0900424775613628 0.0884478168636612 0.101639368196942 0.0935346836807724 0.0973512123734195 0.0884478168636612 0.0895575867212146 0.0916800678918882 0.092686365237153 0.0893734257874493 0.0966412144016596 0.0959853115453047 0.0937325929761804 4 4 + 16475912 16476765 16476343.6 16471839 16477025 + gene protein_coding_gene FALSE TRUE AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to PREDICTED: similar to coatomer protein gamma2-COP [Gallus gallus] (GB:XP_414981.2); similar to Putative Nonclathrin coat protein gamma - like protein [Oryza sativa (japonica cultivar-group)] (GB:AAN60990.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0904612261940265 1.07232980662497 0.306778854744482 1 -0.0586461838986323 19.9520989026318 0.0904612261940265 0.0386953968942820
AT1G22760_at 1.6469000174362 1.71435010083321 2.01909252171362 1.64585728128439 1.45239318702504 1.81909004791400 1.70062415196266 1.87787400547308 1.21813737883805 1.56776737220882 0.954845411575052 1.63359070095349 1.09680520583309 1.34322409688041 1.0350725508022 1.36677891757228 1.2556650300374 1.32861856444242 1.60968219857147 0.216892181833904 0.203630280346185 0.212297750974432 0.206520635326445 0.214524348091494 0.203630280346185 0.209271765863957 0.203630280346185 0.214026288951737 0.214193415173667 0.206771080526058 0.203630280346185 0.213152127838677 0.209722764281408 0.210378999936927 0.204456228501246 0.211093782177577 0.211840876498563 0.203630280346185 1 1|0 +|/ 8057826 8058758 8058266.5 8055314 8059004 + gene protein_coding_gene FALSE TRUE AT1G22760.1 PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding Putative poly(A) binding protein May there fore function in posttranscriptional regulation, including mRNA turnover and translational initiation. Expression detected only in floral organs. Identical to Polyadenylate-binding protein 3 (Poly(A)-binding protein 3) (PABP 3) (PAB3) [Arabidopsis Thaliana] (GB:O64380;GB:O80546;GB:Q9FYS4); similar to PAB5 (POLY(A)-BINDING PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT1G71770.1); similar to poly(A)-binding protein (GB:AAA32832.1); similar to RNA-binding re (GB:ABE82276.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515) -0.107099699776381 -1.07228233545717 0.306799236366173 1 -0.0586924582319018 3.09303301902269 -0.107099699776381 0.0963120579597759
AT2G18510_at 6.68691797921416 6.49693648508366 5.99547086342457 6.58582015077995 6.17985641086044 6.61523425287187 7.1133058742646 7.45102607565656 4.91909894674448 5.53463913319373 4.87278180127288 5.39241259877107 5.83879531457316 5.53467381885853 5.675695783136 5.86591932098225 6.42040493809368 5.82047065821743 5.56541777932323 0.236516480809913 0.235964737647715 0.237065578042288 0.239331973618668 0.239822594731781 0.238389837923357 0.247736800316395 0.236986577491661 0.245557762928183 0.237474785424195 0.245424857616031 0.238629615279953 0.240438909233567 0.245387637391726 0.241498182169811 0.240723657757046 0.252600371110655 0.240121374759709 0.242489258114974 2 2|0 -|/ 8038660 8039253 8038955.9 8038264 8040701 - gene protein_coding_gene FALSE TRUE AT2G18510.1 EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to PREDICTED: similar to Splicing factor 3b, subunit 4 [Strongylocentrotus purpuratus] (GB:XP_784135.2); similar to PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 6 [Bos taurus] (GB:XP_885204.1); similar to Os10g0457000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064759.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.127512762293111 -1.07222778562849 0.306822658457541 1 -0.0587456307524865 12.1492524610154 -0.127512762293111 0.143563842893535
AT2G28290_at 8.45192789015917 8.583815881237 8.30795518187978 8.47005177776087 8.67297512679431 8.54776130059033 7.95312785156584 8.47701805073459 8.62309853249584 8.54312474742503 8.34866303281307 8.21429238033963 8.25242747512074 8.29123066758552 7.9205787292732 8.31864372827052 8.08142354979373 8.55798833861517 8.62878171718963 0.154826270204818 0.151474042113668 0.158141982069762 0.158967782181527 0.151939993436622 0.151870088378422 0.161720857560245 0.154612603903236 0.151600680297266 0.149492271479502 0.146271798197462 0.148239089223296 0.154421674140772 0.156633337480177 0.151839445262026 0.147676575531954 0.164266584973436 0.163154788533768 0.148669828915288 2 2 + 12079468 12079892 12079665.909 12063290 12080160 + gene protein_coding_gene FALSE TRUE AT2G28290.1|AT2G28290.2|AT2G28290.3 SYD (SPLAYED) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT3G06010.1); similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT5G19310.1); similar to RSC complex subunit Sth1 [Asper (GB:XP_754000.1); similar to unnamed protein product [Asper (GB:BAE55049.1); similar to putative STH1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45237.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Nuclear receptor coactivator Src-1; (InterPro:IPR008955) -0.108482791489106 -1.07198519955350 0.306926834167114 1 -0.0589820658579594 16.8563246259719 -0.108482791489106 0.0999844480603694
AT2G47690_at 6.10282778207544 6.15884556347243 5.83162067622438 5.96773221737571 5.98553969039539 5.33576722432755 6.05756850407494 5.868919767912 5.48859108473431 5.77044067646391 5.88074093313657 5.87130561376327 5.82733552187457 5.70270099663123 5.79829515986209 5.60107986263981 5.61053853026857 5.51353433539504 5.81730613337126 0.173792999251726 0.175727628048467 0.172168018353217 0.172711224248873 0.177690070682105 0.182093870817304 0.170024353248864 0.170876898740148 0.174372262282719 0.175347212862073 0.170718152782308 0.175442397753916 0.181587913527213 0.173804735248547 0.179893269338596 0.170224778200661 0.184861651166035 0.174084267087196 0.174723671502189 2 2 + 19558335 19559090 19558497.273 19558333 19559425 + gene protein_coding_gene FALSE TRUE AT2G47690.1 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT3G62790.1); similar to fiber protein Fb14 [Gossypium barbadense] (GB:AAP34361.1) -0.116648357314856 -1.07181626452135 0.30699939711624 1 -0.0591466923197691 11.6225046785920 -0.116648357314856 0.119827946187488
AT1G52320_at 7.71640438276904 8.15255709648264 7.95205877256065 8.27166868805038 8.11985226589838 7.77384757383298 7.37368973532747 7.51079759723725 7.48810835787948 7.75980395008429 7.66132666057252 7.50074562121303 7.556718818801 7.7088840723956 7.38289221008958 8.0630437465419 7.49430258618182 7.68498828228843 7.98605682030456 0.188908003961039 0.189540417192638 0.195383352675015 0.189351576871731 0.194634776164088 0.197233364819571 0.188217956227076 0.194330242688126 0.201487973501829 0.191127872047115 0.191143124863055 0.187039121828809 0.188144864400711 0.199109256919964 0.198548745498550 0.190621966036385 0.205782291166943 0.198591209895858 0.187039121828809 1 1 + 19490281 19490848 19490568.727 19488024 19491148 + gene protein_coding_gene FALSE TRUE AT1G52320.1|AT1G52320.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25590.1); similar to Spectrin repeat [Medicago truncatula] (GB:ABE93358.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25590.1); similar to Spectrin repeat [Medicago truncatula] (GB:ABE93358.1); similar to Os05g0394200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055459.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.113975497901269 1.07172199085261 0.307039896285744 1 -0.0592385526502756 15.5469940769448 0.113975497901269 0.113597898028461
AT2G47900_at 7.11702991943488 6.97364043146117 6.38915462700411 6.69442007650622 7.44506397340838 7.21998569158678 7.158692946729 7.39125595184128 6.54288610608586 6.76845901638502 6.92664229676873 6.8162168516313 6.98563295157067 6.6300780339755 6.98515048298685 6.75998501513439 6.38469705819635 6.83969603134538 7.00171886504153 0.179973380583611 0.174275594263424 0.193189353271693 0.172568494550148 0.175245144596861 0.198405685304377 0.173693889642218 0.179625094931354 0.190393907319531 0.174047889948595 0.173989086562116 0.172401254501724 0.174270479095876 0.189688833311014 0.183713724176673 0.178125182922073 0.188788950257918 0.178700608703569 0.174077060983553 2 2|0 -|/ 19618288 19618922 19618642 19618013 19620290 - gene protein_coding_gene FALSE TRUE AT2G47900.1|AT2G47900.2 AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP10 (TUBBY LIKE PROTEIN 10), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G25280.1); similar to Tubby protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95936.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) -0.101503854604932 -1.07164179473965 0.307074351037834 1 -0.0593166907510362 13.8296722869325 -0.101503854604932 0.0808914078616214
AT1G51100_at 4.82434684975845 5.60431426682082 4.93049322426937 5.24311559698021 5.48732797360198 4.82684219832678 6.94449526762653 6.60420613840313 4.92540163613622 5.41343742553557 6.44961494171742 6.07521273538751 5.79444024720868 5.76412879398102 6.36876877284672 5.60574810013658 5.14260829395945 4.91919021661888 5.25749073139898 0.280395844980266 0.280951559508745 0.284627513489504 0.286999740364590 0.286792013733544 0.296368849709896 0.28060817371808 0.281913426325714 0.292006995533167 0.287559208089530 0.291267252700504 0.279030825410005 0.282132523798491 0.297351972721582 0.276746452626480 0.282005170456785 0.294968562265695 0.293386829217196 0.282258471640132 1 1 + 18938046 18938619 18938232.545 18937976 18938861 + gene protein_coding_gene FALSE TRUE AT1G51100.1 similar to Os01g0676200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043849.1) -0.153104233657934 -1.07150047305937 0.307135074358723 1 -0.059454374501894 11.0400129946846 -0.153104233657934 0.194108410495794
AT1G73620_at 0.839730450415647 0.865272136839469 0.555340725050085 0.742512599370597 0.548677013141038 0.538092752049936 0.722424052323438 0.684507035192126 0.802565652972158 0.828130490616937 0.402255711426114 0.514780561138078 0.53624285767185 0.53207972622882 0.990990074518465 0.882610072265505 0.623606001846104 0.549975591710924 0.247767529089784 0.17395859241411 0.172828378412882 0.172607606179965 0.183870772228633 0.179487622146679 0.180186412879909 0.173029841669616 0.179777929480568 0.169974146118672 0.177076989724829 0.178057849277250 0.178682915501242 0.179843203602579 0.178147541477101 0.176657402486077 0.173547201414340 0.170225203301959 0.176046198678085 0.172076712610194 1 1 + 27685580 27686576 27686207.455 27685069 27686790 + gene protein_coding_gene FALSE TRUE AT1G73620.1 thaumatin-like protein, putative / pathogenesis-related protein, putative similar to ATLP-1 (Arabidopsis thaumatin-like protein 1) [Arabidopsis thaliana] (TAIR:AT1G18250.1); similar to thaumatin-like protein (GB:AAA32875.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) -0.089457314624325 -1.07105522590754 0.307326448239584 1 -0.0598880657488364 1.31468066162797 -0.089457314624325 0.0333934590459900
AT1G26700_at 0.864135387563228 0.468642146219738 1.26063835501926 0.85211490480576 1.18096758721546 1.01648494971787 1.09331762842626 0.523624280416399 0.958509790695995 1.23046642146932 0.670495832807463 0.990838060189735 0.800421187750164 0.957661233463429 1.0087127124682 1.02938024196934 0.606484905862112 0.900824009067478 0.682926163831883 0.194657831706907 0.198110691045276 0.193148136475713 0.206912522171488 0.192077687639212 0.197915094102967 0.195269545846835 0.195155830903721 0.201243366946832 0.196045085074802 0.197998424568411 0.193718605036589 0.195674663620928 0.201684902649884 0.201603427898159 0.193729084501105 0.193717769024409 0.21219521050309 0.205518967780449 1 1|0 +|/ 9231253 9232174 9231840.3 9228222 9232227 + gene protein_coding_gene FALSE TRUE AT1G26700.1 MLO14 (MILDEW RESISTANCE LOCUS O 14); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO14 belongs to the clade I, with AtMLO4 and AtMLO11. The gene is expressed during early seedling growth, in developing primary root, and particularly in root tips of 10-day old seedlings; it was not expressed in leaves or flowers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 14 (AtMlo14) (MLO14) [Arabidopsis Thaliana] (GB:Q94KB1;GB:Q9LQY2); similar to MLO11 (MILDEW RESISTANCE LOCUS O 11), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G53760.2); similar to OSJNBb0017I01.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE05742.1); similar to H0901F07.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86271.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.126711534740678 1.07105033936014 0.307328549050895 1 -0.0598928246771777 1.82144218739615 0.126711534740678 0.142169579131342
AT1G12663_at 2.22277346776011 1.312389990857 2.09850830664286 1.92349905433322 0.84807479135515 1.30939249973593 1.78385573230107 2.25943253200693 2.00972931034485 0.994961201560924 2.14550316554877 2.53004031647449 2.25247366784146 2.98321707180736 2.15587960598342 1.83126370894214 2.28669610495045 2.38912087163572 1.98357295629644 0.342609547374937 0.342609547374937 0.343058693678984 0.342609547374937 0.354323762599742 0.342609547374937 0.368356855944119 0.342609547374937 0.389109390568277 0.342609547374937 0.378135164611067 0.343557447597443 0.343292191469087 0.366271394235017 0.342609547374937 0.377194378697179 0.342609547374937 0.342609547374937 0.342609547374937 1 1 + 4310993 4311049 4311016.5 4310967 4311455 + gene protein_coding_gene FALSE TRUE AT1G12663.1 Encodes a Plant thionin family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12660.1) 0.154637778516377 1.07066435716007 0.307494523790991 1 -0.0602686719368687 3.71200519864839 0.154637778516377 0.197192249611366
AT2G07180_at 9.07449584333533 9.08358538492125 8.70113719486636 8.80302297026173 9.14868701769783 8.55291829141786 8.01848838201962 7.1843657747398 8.77070155991207 8.11529891981956 8.4257211946865 8.41813544992438 8.06955751365266 8.54193139237587 7.91468819524487 8.45760744062828 8.27047173369448 8.19759738841694 8.49073978290982 0.140804858562123 0.142301908211940 0.146986399963454 0.140372256512536 0.136678411165112 0.150011539290126 0.143071206957891 0.168890463126501 0.149495686621588 0.146333292539176 0.136160957517549 0.139029252570513 0.14661555026331 0.143388545182002 0.142020396019006 0.136762415134634 0.140553604312325 0.147148858864827 0.136160957517549 2 2 - 2981097 2981793 2981417.273 2980896 2983486 - gene protein_coding_gene FALSE TRUE AT2G07180.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G01020.1); similar to Protein kinase APK1B, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95681.1); similar to Os11g0121400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065612.1); similar to Os06g0663200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058289.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.144628945002227 1.07063306052039 0.307507984510330 1 -0.0602991420883674 16.9437762121367 0.144628945002227 0.178268499559397
AT3G21210_at 0.360159110339165 0.355568027586689 0.60820458984039 0.42445664453549 0.316304010352739 0.536830254673201 0.338086703833653 0.599397036393761 0.34518134224084 0.366286621580230 0.477596817287312 0.656634308789048 0.455927453077891 0.486348079815733 0.52215993901416 0.80370492051353 0.449639010093183 0.146359573067708 0.379809796968447 0.187161709904560 0.184805990610343 0.179413987546522 0.178208976881227 0.177879417974472 0.180375838796071 0.183766267585668 0.178202722040820 0.182240881464908 0.186362627325084 0.179095081587869 0.178882358328201 0.177879417974472 0.182240159998405 0.178398698551510 0.180778974207198 0.185166534873969 0.186532028410630 0.178723418769090 3 3 - 7438471 7438815 7438683.6 7437970 7440832 - gene protein_coding_gene FALSE TRUE AT3G21210.1 protein binding / zinc ion binding similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G34480.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.0970915822114765 1.07055588650938 0.307541179041783 1 -0.0603742750489581 0.874153555346299 0.0970915822114765 0.0671798338162399
AT1G55050_at 2.66325028432262 2.58326127730292 2.878215376352 2.18136789916701 2.33297836693425 2.84165972900447 2.51570842406469 2.56573528816478 2.82141166028865 2.66384349928744 3.00881403609610 2.84746942611546 3.12175267030743 2.9356083355479 3.31287109339693 3.01669082989339 3.1970111234482 3.31171320770834 2.9436440418507 0.224446417144984 0.216717541675827 0.226771880733980 0.235846968772698 0.223372981739409 0.217814567858732 0.228009929164061 0.212464278149373 0.219218901977693 0.226672283154016 0.219313653249916 0.214187770886709 0.212464278149373 0.217909323538438 0.217008887535428 0.212464278149373 0.213463956074574 0.224899982224822 0.220644211602458 1 1 + 20548709 20549236 20548951.727 20545554 20549429 + gene protein_coding_gene FALSE TRUE AT1G55050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09040.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09050.1); similar to Homeodomain-like [Medicago truncatula] (GB:ABE90703.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.130462398786319 1.07027172309361 0.307663428406546 1 -0.0606508860035104 5.52208428439234 0.130462398786319 0.150194506910626
AT2G02180_at 8.13341381448546 8.34260462916511 8.32076806410629 7.81465800907842 9.22571238778849 8.69728501011232 8.54492010529242 8.14069634985773 8.0872192085049 7.87522678753542 8.2617825953648 7.8444487772458 7.7782547344043 7.81978786652508 7.79946855492148 8.07859375543375 7.98928465970444 8.17847386948341 7.8367791613338 0.180922587626342 0.172718743828716 0.173709708091003 0.189324799728183 0.186463907310384 0.170682799332606 0.184597530242319 0.176199312513046 0.189651855631954 0.180683668646461 0.179202005514948 0.177403930332903 0.170682799332606 0.179783398670698 0.180621547178322 0.177242238392211 0.181987725707072 0.182709742029760 0.181950848236996 2 2|0 +|/ 561615 562889 562341.25 560863 563232 + gene protein_coding_gene FALSE TRUE AT2G02180.1 TOM3 (tobamovirus multiplication protein 3) Necessary for the efficient multiplication of tobamoviruses. similar to (TOM THREE HOMOLOG), virion binding [Arabidopsis thaliana] (TAIR:AT1G14530.2); similar to unknown [Brassica rapa] (GB:ABJ15786.1); contains InterPro domain Protein of unknown function DUF1084; (InterPro:IPR009457) 0.129941971124271 1.07025854255624 0.307669099670165 1 -0.0606637148145935 16.3534257482825 0.129941971124271 0.149122572720922
AT3G60910_at 7.1668003523164 7.2763170371283 7.9939179678427 8.1176470713172 8.17481079747815 7.78679058168805 8.56118548000377 7.97833348525612 8.01256447717859 8.15385305926668 7.59134417329705 7.47285403967364 8.03113173387623 7.68573996333277 6.93926005622902 8.46337332383234 7.69234375176079 7.38796860510467 8.33657752328244 0.218626800607645 0.217041421177660 0.217248459100877 0.217815559392051 0.223225173755654 0.244619722099488 0.22309887596088 0.217041421177660 0.266905615487229 0.229275769320962 0.225111641268156 0.224170139756653 0.222925169552065 0.226503965781505 0.228283413292739 0.220289888575485 0.232112077874098 0.233137737261576 0.230275436572889 3 3 + 22513089 22514120 22513777.6 22512673 22514347 + gene protein_coding_gene FALSE TRUE AT3G60910.1 catalytic similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G17365.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.118515274057774 -1.07017543053892 0.307704862563713 1 -0.0607446060738962 15.7948088345276 -0.118515274057774 0.124500645348812
AT4G31580_at 8.45325693623412 8.44836732834303 8.54451266137758 8.48705445136219 8.69717988700172 8.43988368936235 8.7534016674986 8.74372910470113 7.65664328822039 7.8006861102309 7.78544895527231 8.06356714546636 8.08913163586413 7.91857267057434 8.28647662609344 7.53882052077259 7.88436502504746 7.54763823110267 7.48805785954288 0.176968908696805 0.172291929805350 0.180263510705735 0.176865037012177 0.165722527247093 0.170633935735961 0.166916190569325 0.173187671218565 0.180150029528549 0.174049646000295 0.165506633257176 0.170508359084586 0.17017124404851 0.180338344853576 0.167617978510868 0.166120189044260 0.182216825285810 0.175730579751081 0.170296550652033 4 4|0 +|/ 15307014 15307844 15307419.4 15306660 15308353 + gene protein_coding_gene FALSE TRUE AT4G31580.1|AT4G31580.2 SRZ-22 (serine/arginine-rich 22) 9G8-like serine-arginine rich (SR) protein interacting partner to the Arabidopsis U1-70K similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT2G24590.1); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84871.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0916295475122539 1.07005953122613 0.307754738995441 1 -0.0608574002182738 16.3397807260379 0.0916295475122539 0.0456615957249713
AT2G22940_at 1.67683824238280 1.59008436599693 1.54950791506806 1.61219972865355 1.20101372656192 1.40254648695130 1.45933717651206 1.45138583558647 1.33571053371653 1.12616502846419 1.78640666482218 1.40491795117863 1.521188280808 1.79876317506501 1.30896442663781 1.42300057769200 1.85885086018851 1.78632622257795 1.51948513108153 0.198254699475670 0.193493629078298 0.201418054256876 0.198406491694627 0.194900174948856 0.198485284260582 0.196585485923514 0.194647916554022 0.201682104825907 0.202272233881719 0.196609102040695 0.195199331814361 0.193493629078298 0.198053748323615 0.204819805364541 0.195669763007484 0.193493629078298 0.204051437006289 0.201975078753784 2 2 - 9768742 9770514 9769840.909 9768735 9770542 - gene protein_coding_gene FALSE TRUE AT2G22940.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G45560.1) 0.0904187989864924 1.07005937484283 0.307754806297993 1 -0.0608575524052026 2.96195043519348 0.0904187989864924 0.0395137938319568
AT3G17520_at 1.78022035101704 1.93533628099327 1.78978536421807 1.8237620467496 1.56065906083797 1.49514941397267 1.66708795023939 1.68867659927520 1.85946295043632 1.69698877092679 1.91738688344385 1.53641346435014 1.75254402060339 1.88738845608446 1.48483193248135 1.31476575041737 1.96711363218705 2.01279712408537 1.87762174356881 0.179060118928472 0.185313568329899 0.193377891863852 0.19049559622802 0.179129697494059 0.178535603915704 0.178535603915704 0.178868754509700 0.185976197001257 0.178879527387049 0.192946320957148 0.179168199263771 0.183316507530867 0.181038811502187 0.178535603915704 0.181755059235683 0.18636206546974 0.182501005687361 0.178535603915704 3 3 - 5999469 6000016 5999750 5999295 6000376 - gene protein_coding_gene FALSE TRUE AT3G17520.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein similar to late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44310.2); similar to Hypothetical protein CBG04830 [Caenorhabditis briggsae] (GB:CAE61080.1); similar to Os03g0168100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049087.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -0.0888469938119983 -1.06989677294227 0.307824791164052 1 -0.0610157815061001 3.4903411232132 -0.0888469938119983 0.0299604308626337
AT2G14700_at 1.57202065319438 1.87365442682768 1.49564850832947 2.29196129670095 1.49552371523598 1.60231653959893 1.42857232236807 1.27762771781080 1.69675143200120 1.55188138250353 1.47150098850749 1.25862255954065 2.00085086962422 1.34901332203830 1.78586993261807 1.64452767087700 1.74497199204419 1.85599422304691 1.43421827907248 0.242347900245227 0.235006464865620 0.243281699679489 0.235617841987839 0.232834753910967 0.241979067136216 0.232584570804644 0.232860285609921 0.237940500513937 0.233623785677355 0.238712142011042 0.235021056164866 0.232987386371342 0.247771867826921 0.232584570804644 0.232584570804644 0.233968846529311 0.24468623420219 0.247534136306630 2 2|0 +|/ 6299648 6301998 6301445.143 6299548 6302808 + gene protein_coding_gene FALSE TRUE AT2G14700.1 unknown protein 0.130681157588733 1.06967873803243 0.307918653621327 1 -0.061227922889689 3.22960030216470 0.130681157588733 0.150794671638887
AT3G44840_at 0.453137556990537 0.466755806800877 0.571562533857166 0.588027588409554 0.447499896552043 0.507997116294595 0.509482865329526 0.6536378393212 0.512918317948593 0.461246341692397 0.352047911148803 0.37593543955526 -0.234528128456176 0.198446728982944 0.485553535926246 0.512405162297073 -0.0481186453342147 0.0296024107062842 0.207428827916723 0.205156287230892 0.202554127592976 0.210249849457816 0.20956114304957 0.202554127592976 0.20614798188672 0.202554127592976 0.202554127592976 0.206319950166466 0.207056175303557 0.212365729379072 0.206636856279335 0.211409039145087 0.204269187891575 0.205235172975056 0.209193320806276 0.205954788974246 0.203541209975647 0.204447859236284 3 3 - 16383517 16384141 16383845.091 16383484 16384744 - gene protein_coding_gene FALSE TRUE AT3G44840.1 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G44860.1); similar to defense-related protein [Brassica carinata] (GB:AAK50345.1); contains InterPro domain SAM dependent carboxyl methyltransferase; (InterPro:IPR005299) -0.0884640886657445 -1.06962835612890 0.307940345744326 1 -0.0612769380741214 0.826153924297361 -0.0884640886657445 0.0273059887372548
AT3G13222_at 5.02246774957454 5.12302270367516 4.99467181962395 4.87402260015375 4.45861492776602 4.71906979877494 4.03765206534947 4.63685282281434 4.97271862226995 4.87748815249392 4.81687955500807 4.84220599447971 4.48891899134323 4.46157564628594 3.88620221894774 5.04465650733967 4.59886109777512 4.7493241237731 4.84205766025785 0.228006908339647 0.220380380345620 0.248020401769262 0.220380380345620 0.224976560823714 0.221051892957958 0.221401655664314 0.231751967446341 0.240179019879764 0.231581584067988 0.220380380345620 0.225190008307888 0.235334830381552 0.229221376491754 0.233690704059521 0.224020895691221 0.228222249028996 0.226935509257257 0.230657165008978 3 3 - 4251335 4251953 4251604.9 4251021 4254274 - gene protein_coding_gene FALSE TRUE AT3G13222.1 GIP1 (GBF-INTERACTING PROTEIN 1) Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55820.1); similar to hydroxyproline-rich glycoprotein family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29556.1); contains InterPro domain Protein of unknown function DUF1296; (InterPro:IPR009719) -0.114873755122605 -1.0694740691283 0.308006781792284 1 -0.0614270282920828 9.48754655857135 -0.114873755122605 0.116287817953838
ATCG00780_at 8.74203733567258 8.86779281563185 8.63452008702171 8.82098776634484 9.73567050038945 8.42108790473678 10.2877507622136 8.83502969157508 9.71565075872854 9.73219234848537 10.594193429986 11.1526225404530 10.2311574509060 10.5822668347722 10.6808319723092 10.530059122803 9.96999170115623 10.0721353210310 9.71631045496673 0.110972303717459 0.117471931825781 0.112791156593143 0.110420862124231 0.108155205580263 0.112088358239700 0.111557249878927 0.112676359972247 0.113294332144347 0.112494356889973 0.111120910673203 0.108155205580263 0.108155205580263 0.111729947192791 0.112497479170987 0.108155205580263 0.114641025063532 0.112239810604110 0.111477113843726 C C - 80743 81035 80919 80696 81064 - gene protein_coding_gene FALSE TRUE ATCG00780.1 encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L14 (rpl14) [Arabidopsis Thaliana] (GB:P56792); similar to ribosomal protein L14 family protein / huellenlos paralog (HLP) [Arabidopsis thaliana] (TAIR:AT5G46160.2); similar to ribosomal protein L14 [Eucalyptus globulus subsp. globulus] (GB:YP_636335.1); contains InterPro domain Ribosomal protein L14, bacterial and organelle form; (InterPro:IPR005745); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) 0.237593344650064 1.0691800617601 0.308133411478275 1 -0.061712990690838 19.1421305166502 0.237593344650064 0.341278124907409
AT2G35300_at 1.91880864151828 1.64622697985199 2.16182847959426 2.32916894170326 1.71506912480071 1.95439892538821 1.84627225047886 2.10622968225712 2.18915366245436 1.9352506733108 2.34329674406606 1.79318151088284 1.60169533264463 2.03051368630708 2.36034386961681 2.14154277325954 2.30618167556418 2.17746695110865 2.03010623610798 0.203821227323792 0.196131558541861 0.197752132958458 0.198695515751580 0.197952948170267 0.199070250408305 0.204321070219756 0.200352526826761 0.202421609092493 0.204998192588314 0.194849217986852 0.193924309457201 0.195571664071248 0.203005070395239 0.195971635191347 0.196763026180520 0.200568910899373 0.203394335880716 0.196968290544021 2 2 - 14870149 14870395 14870296.636 14869980 14870466 - gene protein_coding_gene FALSE TRUE AT2G35300.1 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein similar to late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G32560.1); similar to seed maturation protein [Glycine tomentella] (GB:ABB72430.1); contains InterPro domain Late embryogenesis abundant (LEA) group 1; (InterPro:IPR005513) 0.101753136659278 1.06860617675595 0.308380698476180 1 -0.0622709923486385 4.03264104914355 0.101753136659278 0.082480149785207
AT2G19380_at 2.96691607304013 2.71253359045397 2.51285181230185 2.93696985958933 2.20895566246265 2.66322720770625 2.59872384029430 2.71573802710615 2.98838929962336 2.87471743082082 2.84877122881945 2.85018591926191 2.82219487294898 2.59186556389336 2.8011952658728 2.38274836951778 3.0340003555088 2.89373478289621 2.66017997894158 0.182045949080791 0.187776595127981 0.179417259572751 0.18070585658256 0.182823006182208 0.179417259572751 0.184324742466619 0.183279196938199 0.181903340335734 0.179417259572751 0.182277804742111 0.179417259572751 0.181042873861888 0.181019611213210 0.182103117503894 0.181445847362725 0.185415333356657 0.181749892191685 0.179417259572751 2 2 + 8393094 8393660 8393402.364 8390938 8393686 + gene protein_coding_gene FALSE TRUE AT2G19380.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G22100.1); similar to RNA-binding protein [Gymnadenia conopsea] (GB:ABD66518.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.115492636081979 -1.06857994518799 0.308392005238919 1 -0.0622964922171823 5.47408081643691 -0.115492636081979 0.117962051470652
AT2G28610_at 0.668521860708871 0.781976104470612 0.83213079565757 1.04443619630377 1.02946789954479 0.910693852073442 1.14679284924451 0.833351924042379 1.21647414296313 0.981308026525346 0.364967813346314 1.07727194498597 0.925378066124146 0.960982420131 0.31075953363739 0.510270764801818 0.885356997590368 1.06605150942288 0.968650993835463 0.224600549917292 0.210797406026944 0.210735432033559 0.213116369942037 0.213236069377832 0.217517818165281 0.210873214237253 0.210107305510899 0.225176772644846 0.211797266769033 0.215356070112825 0.215948593008401 0.214393607924944 0.216793616904292 0.216946688401439 0.217486215211478 0.210171391173647 0.219011542135541 0.211207184589991 2 2|0 +|/ 12269401 12270320 12269937.9 12269090 12270492 + gene protein_coding_gene FALSE TRUE AT2G28610.1 PRS (PRESSED FLOWER); transcription factor pressed flower (PRS) encoding a putative transcriptional factor with a homeodomain, required for cell proliferation. Identical to WUSCHEL-related homeobox 3 (Protein PRESSED FLOWER) (WOX3) [Arabidopsis Thaliana] (GB:Q9SIB4); similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G18010.1); similar to Homeobox domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91096.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.0981631692873482 -1.06844833315611 0.308448739553881 1 -0.0624244255708561 1.81497523643723 -0.0981631692873482 0.0714147632585038
AT2G27980_at 5.68149143060162 5.72733281316511 5.41729462581918 5.47898585477147 6.04893729123601 5.8199655489052 5.40958319471684 5.79833353703309 5.79854666792861 5.58666768545881 5.39191238764679 5.7454484601493 5.66757477335343 5.56380854395379 5.61836353211721 5.62131890466699 5.16968369005761 5.18397432308755 5.815686821278 0.199662032841419 0.208490325881527 0.213999933431223 0.205706717280712 0.205410318399630 0.213045150105157 0.198613955455223 0.202370420803372 0.209020798042910 0.198613955455223 0.206022307528064 0.202763084210211 0.202158567583949 0.198613955455223 0.203598855747962 0.200519559389689 0.202653355764062 0.201648211393478 0.198613955455223 2 2|0 -|/ 11921053 11922152 11921545.7 11920706 11926818 - gene protein_coding_gene FALSE TRUE AT2G27980.1 protein binding / zinc ion binding similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G36720.1); similar to putative PHD zinc finger protein [Ipomoea trifida] (GB:AAS79577.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.100631280852791 -1.06836597109934 0.308484247574614 1 -0.0625044791588866 11.2871876879148 -0.100631280852791 0.0792019844438961
AT4G32620_at 6.66064213408327 6.85478545161347 6.43644889227844 6.94607548238352 6.9993683421197 7.2357270566018 6.67345330743135 7.26914182373998 6.09076487024193 6.31805306004329 6.70206892214853 6.72625735899624 6.48252579036967 6.77799235781606 5.70613813329796 6.61450041556868 6.61787318546119 6.66523786421641 6.55254139655511 0.235043296369528 0.228866160198175 0.23194738010279 0.226968755421495 0.226325290196775 0.244488092550286 0.238617970812787 0.228057519193766 0.248409430494768 0.233453372169166 0.23453647893179 0.226325290196775 0.237315271543206 0.240710568444485 0.232523043170778 0.229991896036635 0.246786206987008 0.233638673701534 0.23256276660166 4 4 + 15736553 15737168 15736880.636 15731679 15737278 + gene protein_coding_gene FALSE TRUE AT4G32620.1 nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04670.1); similar to Os01g0179500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042200.1); similar to Os02g0100200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045580.1); similar to Tudor [Medicago truncatula] (GB:ABE86625.1); contains InterPro domain Tudor; (InterPro:IPR002999) 0.128010204333206 1.06816618857104 0.308570390867848 1 -0.0626986417363957 13.312968992497 0.128010204333206 0.145625385405068
AT4G11510_at 2.09922741466878 1.94116067769182 2.41860468774172 2.69767165065038 1.89956464636566 2.07948844889032 2.34733119378882 2.04221713419697 2.34374419678091 1.70456290226172 2.20703013034305 1.86186490527384 2.25229605745873 2.29253569049899 2.28342029121048 1.89174624444 1.92765169470478 2.62770145707171 2.34418810518886 0.195918447288120 0.194056711204896 0.194511534581834 0.199604035236680 0.194056711204896 0.197606969367122 0.199796076793473 0.201410436788371 0.202084879138164 0.20274030421419 0.194056711204896 0.203861516032544 0.194056711204896 0.199340477445479 0.195750358240900 0.194056711204896 0.203247984279804 0.200655314523398 0.200612185829293 4 4 - 6984050 6984257 6984163.455 6984046 6984303 - gene protein_coding_gene FALSE TRUE AT4G11510.1 RALFL28 (RALF-LIKE 28) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL21 (RALF-LIKE 21) [Arabidopsis thaliana] (TAIR:AT3G04735.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.101773663728392 1.06806309478513 0.308614850501881 1 -0.0627988241655061 4.34008950355882 0.101773663728392 0.0826923611699886
AT4G20770_at 0.943101111685476 0.829170521937522 1.05905358851081 1.35877438306048 1.02001708161012 0.864308465682048 0.669654621643592 1.14211433414040 0.93800550485168 1.12455937993162 1.14133287230572 1.07630863609731 1.69891389135074 0.785747394727659 0.855512724944622 1.04525205447209 0.819719442661766 0.620943404748804 0.838307550972185 0.170242380375781 0.173908627561876 0.17945333699641 0.170242380375781 0.17175301606244 0.175434840379681 0.175159586814425 0.174572806039886 0.181259728413955 0.177844330493307 0.175545986388475 0.180175213024138 0.177384514049280 0.174971112615842 0.1713311072041 0.173434090839278 0.184311170897254 0.178405416341251 0.174924211941745 4 4 - 11130858 11131219 11131059.273 11130773 11132995 - gene protein_coding_gene FALSE TRUE AT4G20770.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02330.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26238.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.109018528221271 1.06786894158234 0.308698593033430 1 -0.0629874736285908 1.97198615415818 0.109018528221271 0.102420891731041
AT1G05590_at 4.91610827553513 5.27532671016003 4.81311638032168 4.76957628319344 5.26626199674559 5.21977210922658 5.19217320470192 4.88474126352543 5.04834778416823 5.0635484309079 5.31992813996016 5.60563707947328 5.33439127778795 5.38014277657389 5.23595105782408 5.6287901987189 5.04626576066241 5.13472451398232 5.13531245236512 0.174217218558111 0.181471535539256 0.178516000956478 0.177517921525499 0.178169403947609 0.178369560086087 0.182255747329685 0.176668702962489 0.182152504897005 0.176825705054593 0.177036638565087 0.179317355607112 0.176804749797286 0.184136329178404 0.175499982127082 0.174217218558111 0.187524958172549 0.176841844305993 0.17798462855199 1 1 + 1671118 1671653 1671393.727 1669349 1671875 + gene protein_coding_gene FALSE TRUE AT1G05590.1 glycosyl hydrolase family 20 protein similar to glycosyl hydrolase family 20 protein [Arabidopsis thaliana] (TAIR:AT3G55260.1); similar to Os07g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060078.1); similar to Glycoside hydrolase, family 20 [Medicago truncatula] (GB:ABE82127.1); similar to Os03g0219400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049401.1); contains InterPro domain Glycoside hydrolase, family 20; (InterPro:IPR001540) 0.101710145183491 1.06786355645563 0.308700916001201 1 -0.0629927057122245 10.2512003978112 0.101710145183491 0.0825616454849138
AT1G12470_at 7.32848418623877 7.02949365869298 7.02404227498769 7.0398559663406 7.2476555505773 7.20236675584613 6.90153040675183 6.56317086167225 7.07821450022364 6.85475581317555 6.39560673473628 6.32876174626763 6.4404739709669 6.58507542819499 6.66686618313795 6.41469288703993 6.17234436835722 6.95983735036618 6.67392283695022 0.187434519417471 0.187892933121604 0.185880681391507 0.183598925703558 0.189897479446941 0.192472466813828 0.183919994265694 0.193576441971133 0.193140644430775 0.188372386809662 0.190602871961698 0.185145933358688 0.185816097460331 0.194611514226688 0.192140243253729 0.183337616299921 0.204509745041975 0.188583062639861 0.192721454888698 1 1 + 4256307 4257171 4256696.182 4251357 4257390 + gene protein_coding_gene FALSE TRUE AT1G12470.1 Pep3/Vps18/deep orange family protein similar to vacuolar protein sorting protein 18 [Danio rerio] (GB:CAI11898.1); similar to Os08g0178100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061126.1); contains InterPro domain 7-Fold repeat in clathrin and VPS proteins; (InterPro:IPR000547); contains InterPro domain Pep3/Vps18/deep orange; (InterPro:IPR007810); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.100348345608722 -1.06753581099073 0.308842319543864 1 -0.0633110972860758 13.7242858161800 -0.100348345608722 0.0785797125190305
AT4G23210_at 4.62725064155644 4.82931762250661 4.08845728994559 3.84917280170209 4.45942253975381 4.38177386659161 1.47272729279111 2.01165418661496 2.55713154410836 2.43012000381173 1.83100262010000 1.52000688317647 1.40725395655520 1.71923206261328 1.33484289569899 1.7288998547655 1.68253931906808 1.57385279212224 2.02126296874232 0.304095487474599 0.305458416551902 0.305136141541899 0.297293326027926 0.311866616040607 0.323962226522577 0.300307546979923 0.300782537514768 0.297923438032206 0.297030949488293 0.296915705661941 0.296915705661941 0.300441410111953 0.304286116349541 0.296915705661941 0.298216684052717 0.300214204365602 0.303366444863907 0.296915705661941 4 0|4 /|- 12149514 12150203 12149729.5 12148725 12151490 - gene protein_coding_gene FALSE TRUE AT4G23210.1|AT4G23210.2|AT4G23210.3 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23300.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23300.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23300.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.111500740544665 1.06750114206681 0.308857280074624 1 -0.0633447722091801 5.68290968196608 0.111500740544665 0.108702526886735
AT4G00850_at 2.97848373536841 2.52774859766263 2.49221989223906 2.45656629956809 2.6237304224489 2.88163701401967 2.33417166912410 2.59711254482964 1.79373730915097 1.97284942363878 2.12740190395461 2.01446147790077 1.76205024120670 1.89897020566491 2.62141618910618 1.70257927311100 2.31684801568681 2.34268959210218 1.89076484634833 0.224759858788951 0.225102410593965 0.222885487577003 0.222245775897236 0.2281595042156 0.241800435056801 0.218956280462014 0.227413653402003 0.227516038438390 0.225406215794971 0.218721471760734 0.218721471760734 0.219990067553217 0.224844975507917 0.220597172606169 0.221423218658171 0.218721471760734 0.218721471760734 0.219489992870786 4 4|0 +|/ 358296 358872 358535.375 357551 359194 + gene protein_coding_gene FALSE TRUE AT4G00850.1 GIF3 (GRF1-INTERACTING FACTOR 3) Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA similar to GIF2 (GRF1-INTERACTING FACTOR 2) [Arabidopsis thaliana] (TAIR:AT1G01160.1); similar to Os12g0496900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066805.1); similar to Calcium-responsive transcription coactivator (ISS) [Ostreococcus tauri] (GB:CAL54353.1); similar to Os11g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068275.1); contains InterPro domain SSXT; (InterPro:IPR007726) 0.108338761475846 1.06696767799836 0.309087552517717 1 -0.063862831527253 4.60350175793473 0.108338761475846 0.100920259840157
AT1G12360_at 9.37249759483324 9.36508996595455 9.27446955089466 9.26764754880011 9.63107192400494 8.98703939637084 8.77830569649247 8.39580552713992 8.82179058248429 8.58061573231103 8.7224793192994 8.65009442053843 8.5269013019517 8.8101902256783 8.23635859999345 8.74717368883372 8.50871646619024 8.61530865839029 8.61840237537311 0.144345450035198 0.138463794607206 0.146189280852148 0.141661312272364 0.137057465334003 0.136896610427656 0.142601938727389 0.138763664642663 0.142172347519215 0.135402926679247 0.144984602588477 0.135503968856122 0.144410004515803 0.141607832196954 0.148282955864966 0.138342848300698 0.142854845556881 0.150214235043831 0.145118678163034 1 1 + 4204937 4205928 4205443.636 4200874 4206402 + gene protein_coding_gene FALSE TRUE AT1G12360.1 KEU (KEULE); protein transporter encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis. Identical to SNARE-interacting protein KEULE (KEU) [Arabidopsis Thaliana] (GB:Q9C5X3;GB:Q9LNB0); similar to SEC1B, protein transporter [Arabidopsis thaliana] (TAIR:AT4G12120.1); similar to SEC1A, protein transporter [Arabidopsis thaliana] (TAIR:AT1G02010.1); similar to Probable protein transport Sec1a (GB:Q7XWP3); similar to Sec1-like protein [Medicago truncatula] (GB:ABE87444.1); similar to Sec1-like protein [Medicago truncatula] (GB:ABE92383.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.120341173649616 1.06599944140160 0.309505827785357 1 -0.0648025821803174 17.7718687664775 0.120341173649616 0.129639277401621
AT4G15950_at 3.159238702574 3.09249060738949 3.05154670253968 2.63245687472174 3.33969918138642 3.60165490567499 2.84892226927788 3.17252233673773 2.42369835802401 2.47839687384915 2.57122927462131 2.65243832985353 2.55532747946934 2.94042794963268 2.63379088070490 2.72916109483669 3.28446174320545 2.5321309493886 2.92040372830821 0.237811147860286 0.229460013802883 0.229460013802883 0.234920742846117 0.233829809699784 0.245787798415003 0.236373632020980 0.235745462521811 0.249866626696764 0.235412225422918 0.232446027325633 0.229460013802883 0.237849503057911 0.230636128576355 0.229460013802883 0.231723444019975 0.259016985596997 0.235598706749219 0.233184449819107 4 4|0 +|/ 9040783 9041863 9041489.25 9040758 9041898 + gene protein_coding_gene FALSE TRUE AT4G15950.1 contains domain DNA-DIRECTED RNA POLYMERASE II (PTHR21297) 0.108958623203105 1.06550910535539 0.309717814350064 1 -0.0652782333217578 5.78475175559167 0.108958623203105 0.102880873504569
AT1G64690_at 3.78068124123735 3.05308277007026 3.12188631009486 3.07489877066778 2.77474929563259 3.45642209216573 3.2001478518778 3.48051172677507 3.21065736154237 3.5741992380312 3.35487120725585 3.51580876901231 3.4596354373984 3.0098843197121 3.79445247919855 3.36133866697684 3.300314883668 3.28937018939707 3.42451292924034 0.203297374134632 0.197664668066259 0.197834404648799 0.201427894145587 0.209470016357686 0.195906151420583 0.213059051201850 0.199648412166669 0.201581359758127 0.198201258370081 0.195695941052582 0.197168325093495 0.196809291248642 0.203585982958386 0.209387263013233 0.198944886537664 0.203457260316115 0.203888553492889 0.199100505133223 1 1 + 24042024 24042503 24042290.182 24041697 24042840 + gene protein_coding_gene FALSE TRUE AT1G64690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50660.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP55027.2); similar to hypothetical protein [Oryza sativa] (GB:AAK31269.1) -0.144515231271897 -1.06538965567269 0.309769472520896 1 -0.065394079260144 6.63721384248953 -0.144515231271897 0.179417636351559
AT1G06650_at 10.0341940987443 10.3033744843198 10.4923691875535 10.5198516648653 10.6236417746121 10.0627012703601 10.6192143527196 10.0916706157202 9.4268295288334 10.0500693128697 9.94095487908056 9.79858638319545 9.9689080354934 9.79214563738007 9.45329812587349 10.1098299994325 9.97536016724743 9.77632941680447 9.81348393408168 0.134205178899001 0.128143474066164 0.134327988577972 0.127981172851815 0.129774910751563 0.134063178884087 0.134183694235808 0.135049575771072 0.152353310708363 0.133494498504669 0.139689658296289 0.130959912832635 0.133169450880044 0.137052587173304 0.133388102561772 0.128119951759662 0.133361210859236 0.142418530482905 0.132176004731978 1 1 + 2036554 2037157 2036861.364 2035838 2037365 + gene protein_coding_gene FALSE TRUE AT1G06650.1|AT1G06650.2 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06640.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.125496620886818 1.06444681402203 0.31017744958195 1 -0.0663081128385847 20.1510709340244 0.125496620886818 0.141245898893249
AT1G15920_at 7.36680078999269 8.0977083282664 7.28734898788881 7.7770104934952 8.95509901959647 8.18670566450236 8.22970512325626 8.21934143132652 8.10828101046447 7.94411343625879 8.03884277908449 7.80392098099171 7.78755245241879 8.09438999263349 7.00108820851695 8.0353268122522 7.5668998652898 7.61985878959491 8.3357191399046 0.225098067702618 0.204337762886432 0.234475242496070 0.211852199086254 0.20243904926984 0.216601146160596 0.197491338507258 0.205466560448188 0.204515176738514 0.204426028583558 0.205288715519415 0.208457526748020 0.202882143364315 0.209226126481967 0.211324312419470 0.197187410807332 0.213604330465224 0.203195732616726 0.210553495425896 1 1 + 5470308 5470782 5470514.818 5469383 5471143 + gene protein_coding_gene FALSE TRUE AT1G15920.1|AT1G15920.2 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G32070.1); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.156367043642289 -1.06422943180964 0.310271570515968 1 -0.066518761619835 15.9513930701108 -0.156367043642289 0.202150513097957
AT4G19900_at 2.27011362976092 2.44782721922684 2.38555212331494 2.64085676231652 2.56196214053247 2.38725007181193 2.57313216259808 2.60570119884632 2.0664821727691 2.78089892076036 2.20845570587598 1.90147892395274 2.44103869395874 2.1405347933281 1.65037384138302 2.3160069086945 2.79866415540057 2.51909680064442 2.5226942986133 0.208566725975870 0.203119987262077 0.203119987262077 0.211386749332741 0.207778693025710 0.210547898555021 0.215861841271757 0.207869177281675 0.214544424456775 0.203119987262077 0.21174668488985 0.203119987262077 0.206130837195199 0.20593846718121 0.207948276218159 0.209420567869359 0.206929302693973 0.21345890836885 0.204086930909963 4 4 - 10787019 10787488 10787233.727 10786958 10791443 - gene protein_coding_gene FALSE TRUE AT4G19900.1 glycosyl transferase-related similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to Glycosyltransferase sugar-binding re (GB:ABC75355.1); similar to Os11g0607100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068255.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Glycosyltransferase sugar-binding region containing DXD motif; (InterPro:IPR007577); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Alpha 1,4-glycosyltransferase conserved region; (InterPro:IPR007652) -0.0950119237951161 -1.06365658641109 0.310519701069253 1 -0.0670736989395249 4.83587342619384 -0.0950119237951161 0.0619979359123069
AT2G32000_at 5.88727617454764 5.81560811267228 5.07394169997749 5.2897879882486 5.69594582218056 6.01840474335536 5.88498383525216 5.17469657683599 5.0767889063306 5.70705311571093 5.38846700649304 5.84873048024684 5.31461195625735 5.14581482661026 5.43060421137816 6.00649508507964 5.63832009611506 5.43385965418389 6.03099796922244 0.230484628116097 0.224859975383076 0.224859975383076 0.228279826850586 0.227831118770535 0.230513872679891 0.224859975383076 0.230174950009422 0.239598961651765 0.230192557534014 0.233937403161263 0.226006555889579 0.239320673045774 0.228991786491625 0.245051117282538 0.230020789423100 0.227954543750178 0.230267974872063 0.229886131173033 2 2 - 13623099 13623621 13623419.727 13622977 13628718 - gene protein_coding_gene FALSE TRUE AT2G32000.1|AT2G32000.2 DNA topoisomerase family protein|DNA binding / DNA topoisomerase type I similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to topoisomerase (DNA) III beta [Mus musculus] (GB:NP_035754.1); similar to topoisomerase (DNA) III beta [Gallus gallus] (GB:NP_001006181.1); similar to MGC53016 protein [Xenopus laevis] (GB:AAH46848.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain DNA topoisomerase, type IA, central; (InterPro:IPR013497); contains InterPro domain TOPRIM; (InterPro:IPR006171); contains InterPro domain DNA topoisomerase, type IA, domain 2; (InterPro:IPR003601); contains InterPro domain DNA topoisomerase, type IA; (InterPro:IPR000380); contains InterPro domain Toprim subdomain; (InterPro:IPR006154)|similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to topoisomerase (DNA) III beta [Mus musculus] (GB:NP_035754.1); similar to topoisomerase (DNA) III beta [Gallus gallus] (GB:NP_001006181.1); similar to MGC53016 protein [Xenopus laevis] (GB:AAH46848.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain DNA topoisomerase, type IA, central; (InterPro:IPR013497); contains InterPro domain TOPRIM; (InterPro:IPR006171); contains InterPro domain DNA topoisomerase, type IA, domain 2; (InterPro:IPR003601); contains InterPro domain DNA topoisomerase, type IA; (InterPro:IPR000380) -0.125102430297819 -1.06361512766568 0.310537664915007 1 -0.0671138523803473 11.1704854082839 -0.125102430297819 0.140613029865731
AT1G75030_at 1.45167328564509 1.98650698831816 0.849106594773729 0.742158534794554 0.820173172866029 0.882367322523857 0.615340135394576 0.544569991131634 1.77887939324596 0.66155336490741 1.27745780036173 2.43660647499453 0.673688191562299 0.933869537247797 2.08613349859498 0.77941845007021 0.462587491189638 0.730820502184606 0.735261780743511 0.28009946656858 0.284023868418783 0.27978090517624 0.282097909808514 0.274429535845621 0.27801497954446 0.276310600593633 0.276705551687899 0.276834413242671 0.267988601049184 0.278517533759174 0.273499657461898 0.277905554079777 0.283802598337283 0.271071210086359 0.27331542389555 0.273086349628824 0.273529818419384 0.269787973686362 1 1 + 28178449 28178859 28178668.636 28178039 28179044 + gene protein_coding_gene FALSE TRUE AT1G75030.1 ATLP-3 (Arabidopsis thaumatin-like protein 3) encodes a PR5-like protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) -0.106031648453031 -1.06357246371679 0.31055615178678 1 -0.0671551717776973 2.10205579796830 -0.106031648453031 0.0957856395829105
AT3G13780_at 4.64777050836591 4.41514856151768 4.88325020959773 4.44096969637271 5.35844521521758 4.39946077325667 4.21373963995728 3.67429072040918 5.34269244089348 4.87120984694862 4.9535964927788 4.98627452734829 4.84827869671103 5.35634616509393 4.55420032873473 5.1404911286727 4.35398333404296 4.265844743496 4.84641212289606 0.228796637847662 0.226174760358184 0.230892078028597 0.225787541907494 0.238454198908960 0.244612089232389 0.2291002996972 0.223279566715664 0.228850594844658 0.226638956139269 0.224160373005724 0.223207595681563 0.224678995753406 0.224357917428929 0.229337807132828 0.223432202667038 0.234892707357299 0.225168361824617 0.231680233414557 3 3 + 4525446 4526105 4525803.455 4525079 4526221 + gene protein_coding_gene FALSE TRUE AT3G13780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02720.1); similar to SMAD/FHA [Medicago truncatula] (GB:ABD28514.1); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) 0.16003311978954 1.06349882377273 0.310588062932378 1 -0.0672264878570368 9.41787528093144 0.16003311978954 0.209130050568343
AT1G20800_at 1.36884141579678 1.54513488191167 1.60141029431288 1.52747130702559 1.60134158618881 1.29203408503864 1.57974437413025 1.47986638747364 1.66917999596451 2.00229049361775 1.73398817296276 1.49471628812973 1.31810122713890 1.64871698139387 1.81338792263114 1.62071700678136 1.70680374751270 1.66321883606492 1.81478434128849 0.232095833353170 0.236608415762688 0.231980940438027 0.225869128673316 0.236445641871031 0.227962316018224 0.228126333756075 0.237786390960206 0.230163874580055 0.241729429256087 0.232884157171392 0.239831349912707 0.235456746057549 0.231217867210659 0.238281461415547 0.229016224678308 0.237289732204745 0.230635482465187 0.228635567047059 1 1 - 7228707 7229169 7228902.545 7228707 7231589 - gene protein_coding_gene FALSE TRUE AT1G20800.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G20795.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.095813892074966 -1.06253369456416 0.311006520707663 1 -0.0681607966196486 3.22633448304337 -0.095813892074966 0.0652563191186109
AT2G42090_at 1.54493849741930 1.34135741905479 1.23214299058510 1.09444802447493 1.44741623507378 1.09076938917224 1.42530759088367 1.25021210154880 1.34746633410655 1.29746542339287 1.89772396120272 0.779959524622974 1.18416944966917 1.13230146817193 1.33364145406838 1.31922643419240 1.21970928158653 1.07444699719906 1.16396803900083 0.198795971273195 0.201428744414229 0.201582337967224 0.198795971273195 0.201717769576872 0.205322830827594 0.203659290985323 0.198795971273195 0.203611940266177 0.200492036690283 0.199410156216991 0.204823699926445 0.209748391649845 0.203678264974626 0.202758426956803 0.202338344114212 0.214573303897288 0.208009161533314 0.200005944732914 2 2|0 +|/ 17564773 17565413 17565029.5 17563822 17565447 + gene protein_coding_gene FALSE TRUE AT2G42090.1 ACT9 (ACTIN 9); structural constituent of cytoskeleton actin related gene or pseudogene, based on sequence divergence and lack of expression Identical to Putative actin-9 (ACT9) [Arabidopsis Thaliana] (GB:P93738); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to actin [Hordeum vulgare] (GB:AAN59956.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.100622843280530 -1.06249213775279 0.311024548319959 1 -0.0682010111734238 2.55946432444619 -0.100622843280530 0.0808483093793277
AT2G15130_at 2.58024467872231 2.45052408154581 2.53733005531167 2.68402153303234 2.54795275696373 2.36254534577859 2.55097496928838 2.49742995457149 3.17328597972078 2.92603627805461 3.03734674387454 2.35088077996175 2.81069049066167 3.15248497604572 2.73934954168969 2.68166936230399 3.15045976612707 2.77211773853354 2.99891722939243 0.151665975077516 0.146858521459562 0.155342888501209 0.158541088953576 0.150134416944700 0.154101093781767 0.145504519583333 0.148000806157160 0.157290985340608 0.147713820965277 0.168347149123616 0.149290310270989 0.159274810811037 0.147138173723536 0.156658574072739 0.148568687182709 0.153344770334192 0.160552539672692 0.14587708363715 2 2 + 6572362 6572750 6572585.909 6572027 6573086 + gene protein_coding_gene FALSE TRUE AT2G15130.1 plant basic secretory protein (BSP) family protein similar to secretory protein, putative [Arabidopsis thaliana] (TAIR:AT2G15220.1); similar to NtPRp27-like protein [Solanum tuberosum] (GB:AAO22065.1); contains InterPro domain Plant Basic Secretory Protein; (InterPro:IPR007541) -0.0913512845416369 -1.06206188078657 0.311211242845613 1 -0.06861729743146 5.46118863221296 -0.0913512845416369 0.0475786409440482
AT4G20510_at 0.349041100730524 0.297972689950209 0.478037421368328 -0.230301545398460 -0.0155683531258171 0.680641411746502 0.479234424623179 0.48572070994461 0.760503860672506 -0.13892063463501 0.43916196855588 0.465364099868178 -0.263744446826323 -0.216119805957623 0.42025902461167 -0.0453075056131372 0.199614850592301 0.536606683233699 0.271707384888358 0.230888761235263 0.256129772363328 0.239304740993656 0.230888761235263 0.230888761235263 0.230888761235263 0.272648027906221 0.244114473013665 0.24874667974342 0.235122882986789 0.233325407489094 0.237960970916905 0.230888761235263 0.230888761235263 0.230888761235263 0.230888761235263 0.230888761235263 0.245142222801592 0.230888761235263 4 4|0 +|/ 11042433 11044707 11043570 11041668 11044810 + gene protein_coding_gene FALSE TRUE AT4G20510.1 similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1) -0.140287088040848 -1.06182942428598 0.311312144103942 1 -0.0688421499954435 0.560468680246567 -0.140287088040848 0.172109121640668
AT4G17960_at 4.76030259436928 4.5135168568618 4.64952280454047 4.12009195503139 4.47253898652 4.61879446168248 4.19856283196808 4.03525164582707 3.74570010717671 4.27802050962148 3.92376635608687 4.01184337034883 4.30065244321194 3.95260087719672 4.45896867895584 3.92884709221563 4.31515123141137 4.16859861745018 3.97549621218354 0.198418023356095 0.203493887098255 0.197948679341095 0.192646126867888 0.192037191738265 0.202024264533908 0.199139887738981 0.194186399362999 0.213720081591909 0.193694202876499 0.199789321467202 0.200412335617015 0.195309986063454 0.197673761377421 0.200924751937815 0.195963728965707 0.193440889317803 0.200752525544863 0.205338159708890 4 4|0 +|/ 9971190 9972189 9971612.7 9970859 9972469 + gene protein_coding_gene FALSE TRUE AT4G17960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46620.1); similar to Os02g0128100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045767.1) 0.110571605026397 1.06144693109482 0.311478224693370 1 -0.0692120459492124 8.48721903027686 0.110571605026397 0.107970222434511
AFFX-r2-Ec-bioD-3_at 11.6545698555565 12.0244632862635 11.9020925178050 11.7657789820886 11.8829730016062 11.6332765030943 11.7616693583971 11.9967771189244 1.15138053056138 1.26599048039628 1.51077308717270 1.11542760390692 1.80734242763388 1.29177731787584 1.35844164018669 1.54452727090206 1.93169560678456 1.79454519674038 1.40253541982599 0.274661054101758 0.279196989990167 0.276919449227301 0.276925152072133 0.276392998856647 0.281222390875803 0.275933114960863 0.280427509430326 0.280554688789495 0.28239338651698 0.279386416608866 0.273245912587143 0.283262009724804 0.281088748030297 0.274870065627309 0.278145594616119 0.275512756641584 0.290610806408143 0.278187691610451 NA NA NA NA NA FALSE FALSE 0.103837235834485 1.06134003896776 0.31152464975639 1 -0.0693153986336629 13.2365092842144 0.103837235834485 0.0904244202860576
AT1G74600_at 2.99927280205920 2.68582977709570 3.38448077948731 3.21906357100354 2.82069290422805 2.70989690632731 3.34304410103314 2.01200119288075 2.63592591578263 2.92054988192534 2.75379056951854 2.69748254167865 3.02352558192032 2.53284413100581 2.62456220518245 2.95627831005668 3.39748895378317 2.92860710493198 2.79934613831699 0.211962934474911 0.222900589658893 0.224384862180181 0.223964890418358 0.213708778723892 0.217752795283109 0.212511905609749 0.211962934474911 0.226752546123824 0.212429056550922 0.213988825834826 0.214775146464589 0.213456506287443 0.220343846938309 0.215383675470805 0.222780680492781 0.213519888365634 0.21613705823365 0.211962934474911 1 1 - 28028905 28029353 28029117.364 28028814 28031501 - gene protein_coding_gene FALSE TRUE AT1G74600.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to Os09g0413300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063163.1); similar to pentatricopeptide repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAS93059.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.176272509039534 1.06125347760244 0.311562248643976 1 -0.0693990876716120 5.72158345598172 0.176272509039534 0.239138776673549
AT1G77010_at 2.04732830686453 2.06909161807224 2.20602291228145 1.81834366230404 1.93258755664339 1.92978534742416 2.21400165178393 1.80871172354046 2.12427658396733 1.59849542154205 1.67489606449216 1.51330378477395 2.05098839924224 1.94761283980534 1.70281027966715 1.56077980310854 1.86837612840498 1.91080650963924 2.06170600264209 0.196029962386994 0.196294454004277 0.191750750035345 0.191750750035345 0.193566812413589 0.198136050487106 0.195580600237114 0.191750750035345 0.203861900915879 0.207636229082298 0.192648768724608 0.197449676577186 0.197762301937859 0.202318240964317 0.203239350272688 0.191750750035345 0.195441451065446 0.207525567677025 0.199343255497467 1 1 + 28949094 28949661 28949433.182 28947604 28949691 + gene protein_coding_gene FALSE TRUE AT1G77010.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99910.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.106280532655411 -1.06098348743422 0.311679543819018 1 -0.0696600839046284 3.85666212846037 -0.106280532655411 0.0971323348291304
AT1G13670_at 1.45583623241914 1.41495913141039 0.92412390567945 0.987742981644642 1.30716155995787 1.06587516998525 1.12141196928577 1.06588463631589 1.83654255587079 1.72668016723994 1.43366601408822 1.39416060053162 1.75969354482678 1.64903323412776 1.90601580814124 1.6237646793392 1.49333489534768 1.48005781193748 1.17789406517827 0.200311430222352 0.206465605220823 0.207326378141156 0.205645777499816 0.210145266935836 0.204501822785462 0.204764335654402 0.205393830912664 0.204827687182676 0.212364643313776 0.202076573467927 0.202354373283652 0.209303489594551 0.202748722835931 0.205617482045699 0.20541832303926 0.201842131607261 0.203302915347295 0.200041693580899 1 1 + 4688280 4688636 4688459.818 4688153 4688963 + gene protein_coding_gene FALSE TRUE AT1G13670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69160.1) -0.0906017636307492 -1.06012778300893 0.312051517818668 1 -0.0704869330099378 2.75429349149005 -0.0906017636307492 0.0448010185612045
ATCG00080_at 12.0373487642385 12.4587960137121 12.3622510497702 12.1858541238731 12.0724891615686 11.9361254210947 12.0881399025125 12.3658078655599 13.0156271758082 12.9258374532834 13.5848525969113 13.5705571130107 13.4480697103381 13.1864390897692 13.1136289549361 13.4316696044099 12.9461550786229 13.1232191616881 13.0317989425818 0.0784738915295673 0.0736586453988544 0.0763150175008931 0.0740859988446204 0.0757430577783916 0.0769511727165701 0.076035014344624 0.0781966733143061 0.08385065040355 0.0748560767928929 0.0775864722943588 0.0758264639425839 0.0812540108913173 0.0797784176840276 0.079117089229618 0.0743138920335265 0.0813373977305373 0.0796761482194985 0.075061107703895 C C + 7583 7667 7625.909 7583 7693 + gene protein_coding_gene FALSE TRUE ATCG00080.1 PSII I protein Identical to Photosystem II reaction center protein I (PSII-I) (PSII 4.8 kDa protein) (psbI) [Arabidopsis Thaliana] (GB:P62100;GB:P09970); similar to photosystem II protein I [Liriodendron tulipifera] (GB:YP_740186.1); similar to photosystem II protein I [Ranunculus macranthus] (GB:AAZ04048.1); similar to photosystem II protein I [Typha latifolia] (GB:AAZ04049.1); contains InterPro domain Photosystem II protein PsbI; (InterPro:IPR003686) 0.105571429528585 1.06009182185184 0.312067157418566 1 -0.070521669861713 25.3341824232589 0.105571429528585 0.095482936550935
AT1G21870_at 0.560134407826024 0.634235270210472 0.880662050061076 1.05313043074278 0.422513575164682 0.744689703874147 0.824210950900305 0.679942953683592 0.719405754686396 0.99069290217795 0.584763369018226 1.08974054201946 0.854495363334978 0.457813187879967 0.961170809597918 0.919933121115032 1.16967356622277 0.937286758272864 0.626992113510497 0.201989802829170 0.202795651830501 0.193881504636410 0.193881504636410 0.193881504636410 0.198396878326094 0.196306781704151 0.196915673002943 0.197886448323976 0.198369823489120 0.211301499725225 0.196277185609181 0.196316467285073 0.199782598041763 0.212914007290886 0.196307467676474 0.193881504636410 0.195008525412039 0.212417268783963 1 1 + 7679171 7679638 7679389.636 7678197 7679686 + gene protein_coding_gene FALSE TRUE AT1G21870.1 glucose-6-phosphate/phosphate translocator-related similar to glucose-6-phosphate/phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G77610.1); similar to hypothetical protein DDBDRAFT_0187416 [Dictyostelium discoideum AX4] (GB:XP_637234.1); similar to Os08g0104900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060782.1); similar to Os04g0692000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054364.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0967236885983046 1.06002969367336 0.31209417851386 1 -0.0705816806576232 1.55038484104502 0.0967236885983046 0.0691887594045759
AT2G17470_at 2.37405630582279 2.48053741969287 2.38038385051016 2.31454082388234 2.13274617418780 2.48543912466106 2.27781934993085 2.46120487473923 3.07793337204734 2.74651315722367 2.14604557955537 2.45937208109682 2.49403862242802 2.27833586699191 2.57497640090910 2.9087613917937 2.65056145273962 2.66335470394383 2.11632317630635 0.205328503033560 0.206860637954935 0.218695822133452 0.203649780994142 0.208755142203302 0.207348307054230 0.206819018254092 0.205920008197390 0.220445772055646 0.20405839070996 0.207033579165551 0.209534179550029 0.210180003044199 0.204731072686945 0.207050987354512 0.210201805974899 0.209219366728904 0.209428166903882 0.203473655159428 2 2 - 7591718 7592199 7591890.636 7591587 7595090 - gene protein_coding_gene FALSE TRUE AT2G17470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68600.1); similar to Putative expressed protein [Brassica oleracea] (GB:AAW81734.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) -0.0975597334981296 -1.05953491764655 0.312309431823077 1 -0.0710594941042145 4.94776798924076 -0.0975597334981296 0.0721237569862724
AT1G43000_at -0.083364670926647 0.663082350851693 0.72383196221487 0.425858926367956 0.199540566522424 0.296688885819885 0.0638401534149501 0.153492932810741 0.258156768570930 1.15899590987616 0.0751277884112993 0.754542877847711 0.303747792526044 0.186267909745659 0.310371481167275 0.0943946742957613 -0.182752921173247 -0.0254917557229672 0.536704251861876 0.194275298368424 0.204809855491694 0.193736216678932 0.19737755340755 0.19756085077395 0.203577218695065 0.193736216678932 0.195162047992023 0.204000619222222 0.201889186387758 0.195300571144120 0.195948136430243 0.199449120007014 0.203957055872402 0.201682086704676 0.198849757161121 0.204276882816236 0.199494697017728 0.203247257439993 1 1|0 +|/ 16143314 16144071 16143782.333 16143256 16144095 + gene protein_coding_gene FALSE TRUE AT1G43000.1 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G76590.1); similar to Protein of unknown function DUF597 [Medicago truncatula] (GB:ABE94698.1); similar to Os06g0624900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058108.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) -0.124771134427766 -1.05943658618442 0.312352224431466 1 -0.071154433227157 0.725777200546242 -0.124771134427766 0.140956874933092
AT3G21230_at 5.51519975233612 6.04684823485568 6.4878187454151 6.85462830836382 5.32672593222622 5.64984799891696 6.48570444651295 6.40796137278821 3.51382204885926 4.44286982366818 3.3368425447141 3.18197805623513 4.09351727407749 3.71146317246568 3.34999475195756 4.64818726233518 4.83675279140252 3.3574480006026 4.09140860909323 0.200748393366754 0.197241769819684 0.198149394898149 0.198700604258261 0.196717683759522 0.197026562000732 0.194476172862688 0.196896439420352 0.204048836095622 0.208028878509082 0.194839337128760 0.194559944883139 0.200795708451489 0.199210696561245 0.196222280831835 0.193257440845136 0.195773954682932 0.201543840669074 0.196160621010907 3 3|0 -|/ 7448480 7449035 7448768.4 7448046 7452006 - gene protein_coding_gene FALSE TRUE AT3G21230.1 4CL5 (4-COUMARATE:COA LIGASE 5); 4-coumarate-CoA ligase The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. Identical to 4-coumarate--CoA ligase 4 (EC 6.2.1.12) (4CL 4) (At4CL4) (4-coumaroyl- CoA synthase 4) (4-coumarate CoA ligase isoform 5) (4CL4) [Arabidopsis Thaliana] (GB:Q9LU36;GB:Q84P22;GB:Q8LPN8); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL1 (4-COUMARATE:COA LIGASE 1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G51680.1); similar to 4-coumarate:CoA ligase [Betula platyphylla] (GB:AAV65114.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.117841858771246 -1.05931644232160 0.312404515510292 1 -0.0712704226982446 10.0121200867256 -0.117841858771246 0.125706224044587
AT2G17020_at 3.83474709183436 3.79344544717050 3.14921525655575 3.65533211860571 4.26163248865054 4.08548856728317 3.93883826358479 3.45848585183096 4.38184568771557 4.08647494391804 3.61981744900955 4.20442292385457 3.77189353061235 4.01713588089362 3.587120016701 3.97078327475121 4.17597171962161 4.34281912893477 4.21446268866228 0.246533393363919 0.226096305211559 0.237221437069009 0.224366627763513 0.228652938165492 0.238112708117616 0.224268293191460 0.228559902268166 0.231598831653324 0.227535434110185 0.228222169019409 0.228213244300440 0.225970859299456 0.227436734648887 0.228172439358836 0.228235821733486 0.255469618907569 0.224268293191460 0.226578863050546 2 2 - 7403760 7404155 7403991.636 7403419 7405920 - gene protein_coding_gene FALSE TRUE AT2G17020.1 F-box family protein (FBL10) similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55590.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE89445.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) -0.117405502691327 -1.05918200751669 0.312463034348607 1 -0.0714001965047888 7.86656810101245 -0.117405502691327 0.124746514655509
AT4G01220_at 3.1998134290744 4.30629364565193 3.47193188112766 3.42118685813935 3.60184690222999 3.43605152332931 3.96276207140555 4.39345202797135 2.62748917349832 3.09870599902143 3.6501387291881 4.3485538423063 3.82270750810209 3.599046008268 4.29043977029060 3.82372936339023 3.63623075396826 3.72797270781866 3.46093508139792 0.220066054629941 0.216557139360744 0.226975562900971 0.214440333353066 0.211747374673014 0.215239454745762 0.214840420670684 0.220848253073308 0.226938068227088 0.220059471005758 0.219377581786082 0.21197245146219 0.221033520904182 0.211288633482685 0.213172289392620 0.215015444434383 0.216483442215214 0.218359984963521 0.215308400422591 4 4|0 -|/ 514154 515314 514734 513213 515853 - gene protein_coding_gene FALSE TRUE AT4G01220.1|AT4G01220.2 similar to RGXT1 (RHAMNOGALACTURONAN XYLOSYLTRANSFERASE 1), UDP-xylosyltransferase [Arabidopsis thaliana] (TAIR:AT4G01770.1); similar to putative alpha 1,3-xylosyltransferase [Linum usitatissimum] (GB:AAZ94713.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.158574790895707 1.05910542409659 0.312496374439065 1 -0.0714741188177497 7.1865318357274 0.158574790895707 0.207655175059611
AT4G00585_at 8.4042784457946 8.48933166482356 8.29836869083986 8.38962922008956 8.06855461842551 8.36599890671548 8.0524969420694 8.18141103150972 7.76168607347793 7.77111829245985 8.04926861389642 8.24054559921718 7.61045092306518 7.86264140630531 8.2573523379008 7.61431554198465 7.65197976663385 7.85546179230885 7.57711681199527 0.142031356111373 0.140867072056137 0.152974551499216 0.152571071726803 0.146863945842163 0.143185631729724 0.141116058762799 0.150430908793247 0.147180372613124 0.143080073117349 0.141926331955545 0.140621913375899 0.148694141593545 0.143605993096942 0.146644538382973 0.138328301990187 0.140352538790946 0.143436543956209 0.155481706227035 4 4|0 -|/ 251201 252227 251962.333 250955 252598 - gene protein_coding_gene FALSE TRUE AT4G00585.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28446.1) 0.0941016381606472 1.05910192077391 0.312497899651679 1 -0.071477500305528 16.0792882185210 0.0941016381606472 0.0601111499905758
AT2G20140_at 6.37664626946797 6.8233110719176 5.49409230224511 5.79591484549953 6.30732226096587 5.75016254340492 6.62603028146227 6.94554034236852 6.2260610397249 5.97047645460306 6.61353331347865 6.964750265282 6.40810760994306 6.67620722362774 7.43011460799852 6.64069402493955 5.9219175048442 6.41754990033034 5.89754264762233 0.269679396906964 0.264207649768547 0.28628432744934 0.282571234059974 0.273691246689486 0.279171303699722 0.288256962845576 0.271888616893363 0.272069813068519 0.264064067400727 0.266314707007926 0.266697568680609 0.26770266940024 0.265621915834982 0.264064067400727 0.266284705011574 0.271467206513364 0.269674899028883 0.270746806667411 2 2|0 +|/ 8701031 8701892 8701357.5 8699781 8702165 + gene protein_coding_gene FALSE TRUE AT2G20140.1 26S protease regulatory complex subunit 4, putative similar to RPT2A (regulatory particle triple-A 2A), ATPase [Arabidopsis thaliana] (TAIR:AT4G29040.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABD32889.1); similar to 26S proteasome subunit 4-like protein [Brassica napus] (GB:CAC14432.1); similar to 26S proteasome subunit 4-like [Solanum tuberosum] (GB:ABB02638.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.126629872143244 -1.05867944023472 0.312681872581727 1 -0.0718852227873034 12.5976121664776 -0.126629872143244 0.145110223169731
AT3G60510_at 5.28302582803359 4.60483730399664 4.71494613490237 4.50401057058256 5.4900164935153 5.50151422005811 5.38124895429818 4.77208271950901 4.3248142737925 4.30427311690834 4.41196690298269 5.0366343104293 4.45144237521986 4.82037738321586 4.6077350737595 4.63589196950513 4.81361859654092 4.3733827503499 4.62114214914938 0.226075843038659 0.231359930720192 0.225486066366074 0.227349600528248 0.235566626165134 0.239907213950481 0.238632179659191 0.223955491940916 0.225763955207975 0.229170766749381 0.230112473230624 0.223955491940916 0.237260516616453 0.226963274853281 0.231114082991693 0.225735098709133 0.235569351726216 0.244367310591482 0.22752111619883 3 3|0 -|/ 22368130 22369034 22368621.375 22367927 22371122 - gene protein_coding_gene FALSE TRUE AT3G60510.1|AT3G60510.2 enoyl-CoA hydratase/isomerase family protein|catalytic similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G31810.1); similar to putative enoyl-CoA-hydratase [Oryza sativa (japonica cultivar-group)] (GB:AAG13484.1); similar to Enoyl-CoA hydratase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47969.1); similar to Os10g0552900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065335.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.134730571802775 1.05834003767386 0.312829727480950 1 -0.0722126752791368 9.5617724532122 0.134730571802775 0.161937854883198
AT4G24860_at 1.27132657667086 1.30941700296898 1.37579678133968 1.56699900072493 1.33247637482877 1.4354539809882 1.73923236518388 1.86938594609836 1.41825452235252 1.29877416631588 1.45174292991498 1.07321320325806 1.34837538142695 1.22854722479244 1.26410306014694 1.15204026889155 1.50527072245812 1.3816588587198 1.36791379504854 0.159899446059155 0.159154378213687 0.160685936932955 0.160645485597983 0.159926542036968 0.16097722197089 0.166715049450681 0.162291169211168 0.164658270564284 0.162577196419983 0.1610865944345 0.157442049741932 0.161410836964967 0.159128016200276 0.166628917083824 0.161651565799524 0.161471897331069 0.167073262987739 0.162751183782481 4 4|0 -|/ 12801590 12805601 12803031.4 12801559 12808200 - gene protein_coding_gene FALSE TRUE AT4G24860.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G62130.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G02890.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G02480.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85040.1); similar to AAA ATPase; DEAD/DEAH box helicase, N-terminal [Medicago truncatula] (GB:ABE78936.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85038.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0903437383156657 -1.05827948976083 0.312856109667242 1 -0.0722710825403391 2.81864422898717 -0.0903437383156657 0.0443079123033306
AT4G12110_at 7.97248380224201 8.25908916402452 7.47772882625716 7.79742776678194 8.16111778503382 7.91603011655184 8.1569323909626 8.1932918263642 7.38341129485125 6.8226770266639 7.7108250333771 7.9272017893326 7.94440498531524 7.73553804874161 8.11670175954437 7.40087512427753 6.98066366809281 7.63543056250888 7.30483117145761 0.175715966991137 0.171265458713164 0.181981446737493 0.177149675526216 0.173544336142289 0.183352960121117 0.172820878370503 0.175246153792215 0.178928339419491 0.171763059887214 0.170570389261809 0.170944133212307 0.171891407984683 0.17561660490329 0.169955424931975 0.169955424931975 0.185021657308532 0.176949164818448 0.172135423412386 4 4 + 7254792 7255657 7255096.364 7254043 7256394 + gene protein_coding_gene FALSE TRUE AT4G12110.1 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); catalytic Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase. similar to SMO1-2 (STEROL C4-METHYL OXIDASE), catalytic [Arabidopsis thaliana] (TAIR:AT4G22756.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABE87434.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.101887725749518 1.05815040488907 0.312912360647342 1 -0.0723955947493278 15.4176435193054 0.101887725749518 0.085786954914088
AT3G05950_at 1.81602540913535 1.35798449657982 1.86932835130468 1.49811667854822 1.59309125307728 1.56494633307616 1.52059390543320 1.24495989116861 1.74659479107847 1.55261409354935 1.97782461533326 1.69512981685226 1.14298534557526 1.30253966380920 1.90184312953803 1.90690418623369 2.22626907439719 1.63045979767957 1.63625229775406 0.173664650752091 0.172167567334019 0.176502276011644 0.172418191441705 0.169164426589797 0.169111171347864 0.176148819483975 0.173529561592071 0.180245699244025 0.169543655836045 0.170418356755547 0.169111171347864 0.181419698670140 0.169930720753047 0.182991031589474 0.170434523746400 0.171456973621754 0.169864306401310 0.182776917060927 3 3 - 1781220 1781852 1781442.545 1781073 1782013 - gene protein_coding_gene FALSE TRUE AT3G05950.1 germin-like protein, putative Identical to Germin-like protein subfamily 1 member 7 precursor [Arabidopsis Thaliana] (GB:Q9SFF9); similar to GLP2A (GERMIN-LIKE PROTEIN 2A), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G39190.1); similar to germin-like protein 3 [Vitis vinifera] (GB:AAQ63185.2); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.112160227319508 1.05802163282880 0.312968482894039 1 -0.0725197931421437 3.24220488035938 0.112160227319508 0.112733635221395
AT3G59140_at 6.0122407949897 6.0154837384135 6.3915057600935 6.22626184217571 6.08172325222642 5.83561362744946 7.0860350379848 6.4392568220123 5.52487723526148 5.93698638671416 5.44673499490694 5.45820654147557 5.4503969304872 5.58712851808846 5.4029213669754 5.62908710369435 6.02102542825607 5.47112348521614 5.14905174153185 0.202926043700259 0.215578250302635 0.226414469534813 0.214262804798161 0.214358990018683 0.222992058248776 0.21880610064749 0.212566669203714 0.208032626504130 0.206753577875724 0.206686217612742 0.209600927958550 0.2035363822426 0.207703835642445 0.212575784296390 0.204652608973661 0.214908923300001 0.216960454812440 0.208085937580431 3 3|0 -|/ 21874496 21875320 21874895 21874397 21879678 - gene protein_coding_gene FALSE TRUE AT3G59140.1 ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) member of MRP subfamily similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis thaliana multidrug resistance-associated protein 8) [Arabidopsis thaliana] (TAIR:AT3G13090.1); similar to ATMRP6 (Arabidopsis thaliana multidrug resistance-associated protein 6) [Arabidopsis thaliana] (TAIR:AT3G21250.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE87094.1); similar to multidrug-resistance associated protein 3 [Zea mays] (GB:AAT37905.1); similar to ABC transporter, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92722.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.116560859781057 -1.05794051799952 0.313003838753921 1 -0.0725980207747666 11.8086650264048 -0.116560859781057 0.123125453544913
AT1G67410_at 3.54044318237666 3.17105467300666 3.21139033893951 3.44123978196398 3.28680679320748 3.84780283596263 3.35656483565918 3.31589866169254 3.15826455012676 2.97257050491565 3.20493282072244 3.21539631177032 3.02911767833136 3.41993669896664 3.07852711460271 3.36105687444201 3.19247662477125 2.92789381341192 3.00847903450797 0.199861653994302 0.197988424548225 0.199345928474499 0.196874327437255 0.195177658838389 0.20135662989244 0.194920210163329 0.195845777885105 0.217030885294089 0.208727641294480 0.196459873925759 0.196473594259495 0.197722334225745 0.198220969565315 0.204747453792158 0.195744545423696 0.197986731941026 0.204975987116960 0.206127872227813 1 1 - 25255514 25256269 25255806.182 25254856 25257330 - gene protein_coding_gene FALSE TRUE AT1G67410.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT1G74680.1); similar to Os01g0921300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045226.1); similar to secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] (GB:AAX33321.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.116524405805923 1.05787790898354 0.313031130461743 1 -0.0726583980133635 6.50895277383981 0.116524405805923 0.123057434428508
AT3G24750_at 0.600544476127847 1.01414999403667 0.762570318247481 0.694068089166676 0.870445411560158 1.07187532073202 0.989244356361287 0.823063027565642 1.18233693542134 1.28515969343389 1.07589752864246 0.737072911499526 1.18241360897909 0.995599997651093 0.707740666384804 0.590885438988878 1.12242736443407 1.31472468324699 1.01931432062942 0.198299382855088 0.19790841958668 0.206967481689453 0.199845797873998 0.202050330404013 0.196810084049461 0.196810084049461 0.198108204019842 0.208068352043193 0.211281998957552 0.204116816513216 0.200736609567536 0.203509650471910 0.199609916269949 0.211853277072476 0.200824116578635 0.206358410834402 0.209149129174661 0.205657849005666 3 3 + 9036778 9037258 9037030 9036275 9037764 + gene protein_coding_gene FALSE TRUE AT3G24750.1 unknown protein -0.101717860056399 -1.05750927994427 0.313191854728534 1 -0.0730138289322557 1.91730291996135 -0.101717860056399 0.085474345948796
AT1G23360_at 8.22113468144903 7.91510389566603 7.63017677545461 7.00129948788189 8.96997211514537 7.94950601963629 8.17726790451963 7.48070590006006 7.4569642496624 8.22138218987316 7.78391403524524 8.14289016026745 7.44946426612663 7.95579561576857 8.17220367070539 7.90873058530806 6.28511944332474 7.77656590088563 8.2680550816457 0.215226057156427 0.214463458015474 0.22863092779955 0.24795425082357 0.213649392404456 0.222114149379362 0.224883408371606 0.212110676519169 0.255352903466894 0.217281853459015 0.210722013216046 0.212985259897352 0.221021632186024 0.212807423638123 0.212242404325122 0.210722013216046 0.24815149635655 0.222240274183243 0.210722013216046 1 1|0 -|/ 8295446 8296431 8295854.5 8295174 8296912 - gene protein_coding_gene FALSE TRUE AT1G23360.1|AT1G23360.2|AT1G23360.3 UbiE/COQ5 methyltransferase family protein similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT5G57300.2); similar to Fgenesh protein 2 [Beta vulgaris] (GB:ABD83274.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain UbiE/COQ5 methyltransferase; (InterPro:IPR004033); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601)|similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT5G57300.2); similar to OSJNBb0002J11.21 [Oryza sativa (japonica cultivar-group)] (GB:CAE05694.2); similar to Fgenesh protein 2 [Beta vulgaris] (GB:ABD83274.1); similar to OSJNBa0043L24.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE04724.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain UbiE/COQ5 methyltransferase; (InterPro:IPR004033); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.179306438291969 -1.05736136770486 0.313256362712901 1 -0.0731564176132988 15.7513804975255 -0.179306438291969 0.245694426004401
AT4G35600_at 6.9366792917631 7.3746810234794 7.6539197003795 7.73456526637057 7.18722799054796 7.03002560904895 6.19438797377147 6.00667448566078 6.9097581853781 5.82167192412169 5.86412672225246 5.85170452890782 5.95708239499715 6.31153252917106 4.6777984457225 5.9557535913124 6.07939165971898 5.70193264794212 6.37306844894319 0.213183650096259 0.214939259700305 0.220646853390557 0.216302224417955 0.211964692973538 0.212054189111437 0.215111496497681 0.210931055775346 0.224910633264319 0.215037905157117 0.215884538209814 0.214762946446195 0.215967811910855 0.211043767795711 0.219417788428302 0.210931055775346 0.219102720260584 0.215387600823825 0.218793280034803 4 4 + 16898106 16898683 16898464.273 16896242 16898881 + gene protein_coding_gene FALSE TRUE AT4G35600.1 CONNEXIN 32; kinase plant-type connexin (gap junction-type protein), a component of plasmodesmata Identical to Probable serine/threonine-protein kinase Cx32, chloroplast precursor (EC 2.7.11.1) [Arabidopsis Thaliana] (GB:P27450;GB:O81792;GB:Q8VZ07;GB:Q9M068); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G17220.2); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to Os06g0727400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058637.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.102539038386729 1.05706240866162 0.313386776241546 1 -0.0734445680717661 13.0988109182031 0.102539038386729 0.0879516456385554
AT4G10010_at 1.52004879919685 1.48823101678137 1.54629821830772 1.64911725642466 1.23964707028412 1.46767087690608 1.24539414648687 1.49835926434770 1.75181363437752 1.55055762408218 1.68610324901844 1.48469731845983 1.60902575553179 1.77858916667092 1.72804303843285 1.95389628835977 1.4705704312708 1.70590739275997 1.27575384952089 0.177572153055054 0.175399557354474 0.17622249471826 0.174035894913265 0.177873080746580 0.183506251670708 0.178439191855121 0.182722759241078 0.180812164539665 0.180902689276203 0.174781361857197 0.172504324585231 0.188015440410872 0.172504324585231 0.177155820184887 0.177019406775337 0.181696835448714 0.188724812131805 0.18215308327155 4 4|0 -|/ 6263999 6264622 6264317.5 6263594 6266242 - gene protein_coding_gene FALSE TRUE AT4G10010.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G33770.1); similar to Os08g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060831.1); similar to transposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96101.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0943687130901495 1.05702281989839 0.313404048925957 1 -0.0734827206589935 3.05841872245354 0.0943687130901495 0.0618099159144569
AT3G19630_at 5.7908648755747 6.08020169965471 6.10816186026354 6.05173236003961 6.12633472029159 6.21821760787232 5.84629473003387 5.62753112505954 5.10302253808126 4.5554198031277 4.33513197076573 5.05901210936463 4.53194726885678 4.70203140190477 4.46663022224184 4.55252082273377 5.32566350260369 4.5867573401611 4.7240125051172 0.177440171944087 0.174875692594131 0.176726288569317 0.181230317092401 0.180262440662047 0.186569342310691 0.175219299792153 0.180186567312804 0.183268707208398 0.185912246124046 0.178798453060306 0.179501589974138 0.191446881127159 0.178417787945082 0.188389184565047 0.175811903326921 0.181288464748268 0.178810840988688 0.185280736859953 3 3|0 -|/ 6818744 6819770 6819204.6 6818393 6820749 - gene protein_coding_gene FALSE TRUE AT3G19630.1 radical SAM domain-containing protein similar to radical SAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39670.2); similar to Os03g0202300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049302.1); similar to radical SAM domain-containing protein (ISS) [Ostreococcus tauri] (GB:CAL53142.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Conserved hypothetical protein 48; (InterPro:IPR004383) 0.0953493719615246 1.05666233749833 0.313561361303616 1 -0.0738300731754313 10.7257240949843 0.0953493719615246 0.0654869731159874
AT3G12160_at 2.4645395442065 2.02953742385656 2.29778600685924 2.08065924337476 1.99301852577821 2.23220383952527 2.01889532159029 2.34070125963957 2.74206802492608 2.64250729608424 2.12359186264467 2.76659597364812 2.27291511479177 2.64530713163433 2.36618428625295 2.52776579357236 2.13649255677352 2.49198857013437 2.33988823966344 0.223389358684283 0.22383591810409 0.222206374793511 0.222786772192517 0.223447561721351 0.222459110592384 0.221511590204243 0.223705887190223 0.226308964612156 0.231259565039589 0.222242715481056 0.221986200164278 0.233029903815823 0.227490030331592 0.225505132268354 0.225375182530149 0.233154550396728 0.225562904751401 0.226916621183287 3 3 - 3879538 3880329 3879850.091 3879502 3880444 - gene protein_coding_gene FALSE TRUE AT3G12160.1 AtRABA4d (Arabidopsis Rab GTPase homolog A4d); GTP binding similar to SMG1 (SMALL MOLECULAR WEIGHT G-PROTEIN 1), GTP binding [Arabidopsis thaliana] (TAIR:AT5G47960.1); similar to Ras-related protein RGP1 (GTP-binding regulatory protein RGP1) (GB:P25766); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.110483754574304 -1.05639038108772 0.313680080742795 1 -0.0740920614338235 4.67775581964019 -0.110483754574304 0.109057334528724
AT2G32415_at 1.50881762535933 2.37536007400717 2.19599049072154 1.98340151624946 2.56568503961969 2.26478124939305 2.48379619443654 2.00374039835666 1.84815643865195 1.17613593150923 1.30097249760906 1.61257694368080 1.40299067466769 1.27428929146882 1.94224381277580 1.52701537801806 1.17779011674743 2.21617001175095 1.25431312928182 0.248251158694865 0.239850846582274 0.258002137125916 0.251048923060180 0.248578904042656 0.247678438531789 0.237779491127726 0.248504632286845 0.256284854089056 0.251994441465437 0.244112302088639 0.248329109824913 0.251464965778475 0.24390230092361 0.243034980183168 0.239985243851979 0.242097269624148 0.239987887495032 0.239778944247898 2 2|0 -|/ 13771024 13771966 13771584.667 13768214 13772533 - gene protein_coding_gene FALSE TRUE AT2G32415.1 3'-5' exonuclease/ nucleic acid binding similar to 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35910.1); similar to hypothetical protein DDBDRAFT_0203581 [Dictyostelium discoideum AX4] (GB:XP_645586.1); similar to Os07g0513100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059769.1); similar to similar to Homo sapiens (Human). PM-scl autoantigen [Dictyostelium discoideum] (GB:AAO51604.1); contains InterPro domain HRDC; (InterPro:IPR002121); contains InterPro domain 3'-5' exonuclease; (InterPro:IPR002562); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.145045129324084 1.05604764835084 0.313829744886478 1 -0.0744221550538242 3.66417553551168 0.145045129324084 0.182905480453779
AT3G59800_at 4.97456002620296 5.25311134449255 4.84235735735435 5.06179529331173 5.07252161212863 5.35811939655501 5.14584738202212 5.30513583148954 4.63808253882737 5.26220069169219 4.70530567052936 5.05080191095525 4.64133486912195 5.13567454721787 4.86708964235413 5.04107753840096 4.91370361233009 4.78959031774781 5.1262037849309 0.193697373832474 0.183721419463827 0.191373021426394 0.188499226122999 0.184383962333550 0.184592599500495 0.183721419463827 0.186545112933560 0.203278695890647 0.186798127202571 0.206469502721683 0.184020668689851 0.186812972809430 0.185248819728717 0.194564951528709 0.188084657665819 0.188571390516642 0.188773626274142 0.18537485757969 3 3 - 22105588 22107095 22106339.182 22105414 22107335 - gene protein_coding_gene FALSE TRUE AT3G59800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43795.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83898.1) -0.100860986391169 -1.05570326593983 0.313980183455057 1 -0.0747537512718972 10.0776316648108 -0.100860986391169 0.08347672480783
AT1G54420_at 0.172558080467846 0.0818507144939076 0.316426712376586 0.427916662604525 0.640225808808306 -0.150472159186203 0.405976301300127 0.51165482531884 0.416278716456203 0.455633517007206 0.322477584859253 0.0283944413537640 0.376116461128511 0.142710847628231 0.533041538439748 -0.0730765428993003 0.196278537214743 0.113019779410824 0.533146831132855 0.187684350791431 0.186790416358098 0.175999850423448 0.175999850423448 0.175999850423448 0.175999850423448 0.180159706958969 0.178266560770225 0.178644161890705 0.183350098236975 0.192498290325099 0.185209482022876 0.188952539028943 0.176111211148537 0.180021809692668 0.178363414983869 0.186054427814404 0.191174237084241 0.183800873781941 1 0|1 /|+ 20315920 20316028 20315989.333 20315286 20316085 + gene protein_coding_gene FALSE TRUE AT1G54420.1 unknown protein -0.123984207442246 -1.05544627163453 0.314092483072725 1 -0.0750011475832404 0.637378794485022 -0.123984207442246 0.140273488601857
AT1G66730_at 2.34219234575119 2.49767679085327 2.20749967945635 2.07600387732971 2.32845205109740 1.89888229034591 1.99115898743458 2.20773928086435 2.82480534129493 2.88771208895928 3.19655667315931 3.39138456078534 3.58053432364341 3.10907928148137 2.52616931499355 3.24592488214325 2.84265867321366 2.74677985892419 2.51169294852947 0.201737688791826 0.202149761678472 0.198778889274735 0.212667042287872 0.201920465947126 0.198984164870534 0.205481628536971 0.203441535768028 0.199526544229171 0.197070698378468 0.206768167422439 0.206556047784967 0.210827220709271 0.203983790114036 0.205200615569381 0.198861038480741 0.226232321719230 0.199881440857198 0.203431261030896 1 1 + 24894581 24895416 24895039.182 24888571 24895486 + gene protein_coding_gene FALSE TRUE AT1G66730.1 ATP dependent DNA ligase family protein similar to ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1), ATP binding / DNA ligase (ATP) [Arabidopsis thaliana] (TAIR:AT1G08130.1); similar to ATP-dependent DNA ligase; DNA repair metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase [Medicago truncatula] (GB:ABE93666.1); contains InterPro domain DNA repair metallo-beta-lactamase; (InterPro:IPR011084); contains InterPro domain ATP dependent DNA ligase, central; (InterPro:IPR012310); contains InterPro domain ATP-dependent DNA ligase; (InterPro:IPR000977); contains InterPro domain ATP dependent DNA ligase, C-terminal; (InterPro:IPR012309); contains InterPro domain DNA ligase, N-terminal; (InterPro:IPR012308) 0.103250054889974 1.05541286785265 0.314107081845288 1 -0.0750333002940128 5.10434536571038 0.103250054889974 0.0904040878910754
AT3G60060_at 0.62913681793109 0.784910224595303 0.944695901751537 0.769435101711072 0.48680288583396 0.985665308159036 0.667308272315292 0.92191937643665 1.07493561174249 0.961584227120316 0.578282195564866 0.191949569932404 0.662955745008428 0.336939922436605 0.784817077609158 0.477903669036496 0.646329661869613 0.953963380085617 0.491091273731797 0.192439459009590 0.204714145229468 0.192420812145326 0.193345002252166 0.196100116880636 0.200194587017090 0.200789816812447 0.195479535220007 0.206193314394184 0.19750053891034 0.209461072597267 0.196969248730970 0.201454660686986 0.201344738636417 0.192420812145326 0.195514600832628 0.193681730263204 0.203406247896475 0.198407511930571 3 3|0 +|/ 22193277 22194031 22193745.714 22193268 22194055 + gene protein_coding_gene FALSE TRUE AT3G60060.1 similar to male sterility protein, putative [Arabidopsis thaliana] (TAIR:AT3G56700.1); similar to male sterility protein 2-1 mutant [Brassica napus] (GB:AAQ81302.2); similar to Os03g0167600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049083.1); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) -0.108781629147159 -1.05534411752324 0.314137130060149 1 -0.0750994731582104 1.48457408120396 -0.108781629147159 0.105075997788904
AT2G15300_at 1.08291133300223 0.967786533380902 1.21863807191477 1.12094069518467 0.750836561265225 0.788746506320027 1.01438408700046 1.08427689808305 1.26593000028278 0.959014677521321 0.9117200895326 0.797302976134238 0.806014827072255 0.893996816891879 1.00293874771708 0.927010341061952 0.80740166246966 1.45037974355171 0.946630051725532 0.231653395487828 0.226343419362332 0.232933405527439 0.248472980568715 0.228260128569323 0.229776788187789 0.226343419362332 0.230657823442052 0.227018659438004 0.227166461057841 0.229010510728127 0.236883103281100 0.227775005931808 0.226343419362332 0.232421686835084 0.227966391210306 0.238894971719215 0.231375325208558 0.236741105028674 2 2|0 +|/ 6658363 6658984 6658720 6656712 6659092 + gene protein_coding_gene FALSE TRUE AT2G15300.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G34220.1); similar to Os06g0638500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058153.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os09g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062569.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.087572590075721 -1.05526853682837 0.314170166066045 1 -0.0751722163385208 2.00695869930082 -0.087572590075721 0.0295313947374372
AT3G52220_at 8.67192252679622 8.63476599698105 8.88507774555703 8.88031189843282 8.91377495014078 8.70412819059094 9.04935446124187 8.94409034306676 8.80381258671535 9.12800003832912 9.1618718361846 9.18875423420536 9.20174799680434 9.25323730894463 8.81666849647629 9.34465265148876 9.10844458023335 9.06688563272792 9.0222473892145 0.123765563984985 0.121654048262603 0.141485584294807 0.128908771034972 0.120732852362710 0.131406030421136 0.125407510364866 0.125837611589875 0.137236694599215 0.132981030184455 0.124991410904345 0.123957193223996 0.130020876514362 0.121855651364751 0.136003000621315 0.123493909312612 0.128315638182448 0.121921109288264 0.126345053147857 3 3|0 -|/ 19380558 19381128 19380892.9 19380340 19382052 - gene protein_coding_gene FALSE TRUE AT3G52220.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF98440.1); similar to Os08g0558700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062496.1); contains domain gb def: Hypothetical protein F4F15.330 (At3g52220) (PTHR14580:SF3); contains domain FAMILY NOT NAMED (PTHR14580) 0.0894430174362078 1.05501948963664 0.314279042022929 1 -0.075411884108908 17.8991630208773 0.0894430174362078 0.0411111812767998
AT2G26640_at 4.55534034100463 4.48269936849936 3.27355886099186 3.73553546347427 4.54884246858684 4.59516264856762 4.9523481327293 5.10743295435069 5.29205493193914 4.70477513909221 6.35114576562294 6.66409727742092 5.91051150503632 6.26950248631925 6.62718064985986 4.76631014018778 4.94692337418856 5.54061577993075 4.83910183138185 0.223794336795712 0.219661264715561 0.240968061267030 0.224301278522145 0.222751451332547 0.224375688215034 0.222240628067080 0.218491801005327 0.227652216301027 0.224255896195128 0.232722951538097 0.225272281780573 0.223399478195891 0.230179476481583 0.228217108957702 0.220099666395481 0.244430499957754 0.219753503926459 0.227692295334937 2 2 + 11338203 11338659 11338412.182 11336948 11338936 + gene protein_coding_gene FALSE TRUE AT2G26640.1 beta-ketoacyl-CoA synthase, putative Identical to 3-ketoacyl-CoA synthase 11 (EC 2.3.1.-) (EC 2.3.1.119) (KCS-11) (Very- long-chain fatty acid condensing enzyme 11) (VLCFA condensing enzyme 11) (KCS11) [Arabidopsis Thaliana] (GB:O48780); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT5G43760.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT1G04220.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to fatty acid elongase 1-like protein [Limnanthes douglasii] (GB:AAG28600.1); similar to beta-ketoacyl-CoA-synthase [Marchantia polymorpha] (GB:AAO48425.1); similar to putative fatty acid elongase [Zea mays] (GB:CAC01441.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.101522449721109 1.05488561460524 0.314337579880255 1 -0.0755406985484894 9.82128828300483 0.101522449721109 0.0856394978698347
AT1G16730_at 5.03826588032683 5.31470611745771 5.49392375332675 5.79057994895258 5.58102399583625 5.50785115464339 5.94399219880639 6.81052829522339 4.89269346606027 5.5204766113681 4.9390075157098 4.4937130238595 5.30739733501775 4.92899766278452 4.84025176044392 5.41834774253191 5.62048255289456 5.02961248545996 5.07079832815644 0.210728748360134 0.214740976148076 0.209523927876033 0.211370064272813 0.216973962815375 0.209523927876033 0.221087697814666 0.228519347242118 0.228624643623456 0.21526625682568 0.212703361105757 0.215352395298412 0.209523927876033 0.214512476189422 0.221729301595342 0.209523927876033 0.214642787021996 0.211328042668276 0.213474439203921 1 1|0 -|/ 5726880 5727237 5727074.9 5726361 5727305 - gene protein_coding_gene FALSE TRUE AT1G16730.1 unknown protein -0.136312475893851 -1.05476110817608 0.314392028596372 1 -0.0756604867941566 10.8018834489213 -0.136312475893851 0.166048017208010
AT3G15610_at 8.72046525299351 9.05558324654886 8.99312369438304 8.98558311025658 9.37702911285488 9.01590080198248 8.80645200360783 8.82860864784288 8.88066080217364 8.86298711797323 9.10049260690511 8.91038421486215 8.95267917167634 9.06211662536375 8.68066138156619 8.99731551141275 8.56521108573753 8.63218496000482 8.95622847329606 0.111977016958298 0.111451259851266 0.111144273997813 0.112966918886026 0.113431227758466 0.120400958599297 0.109643183619914 0.11695337227049 0.122125721236778 0.123634832793017 0.114557004179841 0.109535445851791 0.115562021183223 0.111532913212894 0.114163189988766 0.107502998070221 0.124500745157148 0.122824998983634 0.115017829506750 3 3 - 5291133 5291923 5291390.455 5290854 5293097 - gene protein_coding_gene FALSE TRUE AT3G15610.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G52730.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.101401894498874 1.05465540562414 0.314438259626504 1 -0.075762174861876 17.8541379800615 0.101401894498874 0.0853539397801999
AT2G17930_at 8.6406778348609 8.8966395674297 8.41235590210262 8.63671923679969 9.19416868494826 9.00640078107904 8.4583736084406 8.4827187803672 8.75972746152602 8.62492585840328 8.3031175255144 8.44794051667068 8.2142012474112 8.46831206365061 8.16678871851723 8.45521624704922 8.25134752493087 8.54978177842155 8.83924767837309 0.153193820741483 0.143144832794592 0.152500121565202 0.156587029843734 0.149148830367892 0.147988727565780 0.157065166258782 0.158645674917447 0.165843756098805 0.147936462047799 0.153001046898243 0.151012464498503 0.146852337834215 0.143144832794592 0.154399202738441 0.147892224253778 0.16231758777238 0.150409634452171 0.153797553141712 2 2 - 7791564 7792263 7792001 7791380 7809312 - gene protein_coding_gene FALSE TRUE AT2G17930.1 FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein similar to FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G36080.1); similar to related to the component Tra1 of the SAGA complex [Neurospora crassa] (GB:CAC18279.2); similar to hypothetical protein FG06089.1 [Gibberella zeae PH-1] (GB:XP_386265.1); similar to related to the component Tra1 of the SAGA complex [MIPS] [Neurospora crassa OR74A] (GB:XP_960936.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain PIK-related kinase, FATC; (InterPro:IPR003152); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0957017132694697 -1.05452149018796 0.314496837432385 1 -0.075890992609895 17.2652010672726 -0.0957017132694697 0.0674035780759899
AT4G30930_at 4.62588465410902 4.19381852844212 4.01972526383977 3.65356953650176 4.09164354498475 4.07816221285033 3.92596212525866 4.28086490474433 2.94472313167607 3.56970543139513 3.27773777572551 3.90777700646883 3.10502205631393 3.11729305102242 3.77838924316091 3.71783631060528 3.39978507142691 3.78507982425012 3.80938074642493 0.208089870665735 0.205485458742269 0.200569549578139 0.212538034875308 0.203687745155206 0.202697284756417 0.207153524596515 0.205286977807456 0.203790352781241 0.201485681716149 0.203555641430220 0.200569549578139 0.215014518507548 0.201528934956978 0.205313025853714 0.200569549578139 0.204731043782910 0.204351124389656 0.200569549578139 4 4|0 -|/ 15050176 15051335 15050869.889 15049853 15051671 - gene protein_coding_gene FALSE TRUE AT4G30930.1 NFD1 (NUCLEAR FUSION DEFECTIVE 1); structural constituent of ribosome Identical to 50S ribosomal protein L21, mitochondrial precursor (RPL21M) [Arabidopsis Thaliana] (GB:Q8L9A0;GB:O65556;GB:Q9B7N7); similar to 50S ribosomal protein L21, chloroplast / CL21 (RPL21) [Arabidopsis thaliana] (TAIR:AT1G35680.1); similar to Os05g0557800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056292.1); similar to Mitochondrial/chloroplast ribosomal L21 protein (ISS) [Ostreococcus tauri] (GB:CAL50346.1); contains InterPro domain Ribosomal protein L21; (InterPro:IPR001787) -0.113006070527340 -1.05443137144393 0.314536262133787 1 -0.0759776734862133 7.58489625244323 -0.113006070527340 0.115686606924802
AT1G50740_at 8.46467934417647 8.47761030459884 8.3261212242507 8.4592842232938 8.41573916558077 8.01241048344407 7.15899214631397 6.9092190541839 7.81500520389068 6.4772521902138 6.54978636446833 6.84779463986447 6.19190794941796 6.92779343787096 6.44743585993307 6.71657424576123 6.99320598163523 7.1431853911682 6.9335616129483 0.177950322778481 0.169084783780093 0.188584806048501 0.184395510063852 0.176119611462784 0.178316742250405 0.168838356839082 0.168838356839082 0.1818020677051 0.182694315770205 0.172289319205853 0.168838356839082 0.173086110441501 0.170078276561499 0.181759367554377 0.173899009860063 0.181767804416952 0.177101925879445 0.179387164913927 1 1|0 +|/ 18811549 18812388 18811839.444 18811340 18812667 + gene protein_coding_gene FALSE TRUE AT1G50740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20510.1); similar to hypothetical protein 11 [Plantago major] (GB:CAJ34819.1); similar to Os03g0584300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050565.1); similar to Os03g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050510.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.101350521619025 1.05431276548881 0.314588154935931 1 -0.0760917458063317 14.9292487362882 0.101350521619025 0.0853003654455634
AT2G37240_at 8.7661674085269 8.6613081949967 8.9977893771731 9.04368322380247 8.714419306174 8.47932574825988 10.0348776289303 9.92985062028281 8.70935952373022 9.09922415944219 8.99623414312463 9.04502894090277 9.3891038036011 9.16750234083338 8.8532148639044 9.58308834675485 9.69184497435229 9.17787595098855 8.83310824238507 0.102917502712646 0.0985417034415505 0.100729468011537 0.100968564313984 0.099302488270311 0.102242373147356 0.108097736899164 0.104431844564938 0.114596340940295 0.106437845019963 0.106041225258411 0.100281576095544 0.102750676438818 0.101603152935139 0.111548800005192 0.103889773834079 0.103260248625874 0.104863422758406 0.102070632226578 2 0|2 /|- 15647334 15648415 15647866.857 15647018 15648842 - gene protein_coding_gene FALSE TRUE AT2G37240.1 Identical to UPF0308 protein At2g37240, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU2;GB:Q94A62); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65840.1); similar to Os03g0284600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049763.1); similar to PREDICTED: similar to TPA_exp: C9ORF21 isoform 2 [Pan troglodytes] (GB:XP_520707.2); similar to Os03g0729200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051153.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0909119269799528 -1.05396831960001 0.31473889429151 1 -0.0764229672822412 18.1377030113901 -0.0909119269799528 0.0487637684455405
AT4G31470_at 2.58192100466365 2.33430878697841 2.55036643748252 2.80378746734495 1.83919067157396 2.55176486494271 1.94591523902944 2.15070232570171 2.93806595251704 2.69665208609252 2.76972750597439 2.2734329602052 2.51779325121085 2.49983210647706 2.94393746473457 2.97281280636595 2.98160887616492 3.08693299786956 2.43413405057603 0.223109889907680 0.220265799956686 0.22696196790143 0.222041924222878 0.219506923436904 0.224772457854017 0.228139148482257 0.219506923436904 0.226958348933496 0.221042650643212 0.224759317926283 0.219506923436904 0.219506923436904 0.223885869571666 0.219506923436904 0.227072554641105 0.22576623023261 0.219661241469906 0.225921290533492 4 4 - 15261766 15262252 15262063.364 15261752 15262309 - gene protein_coding_gene FALSE TRUE AT4G31470.1 pathogenesis-related protein, putative similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to pathogenesis related protein-1 [Zea mays] (GB:AAC25629.1); similar to pathogenesis-related protein 1 [Zea mays subsp. parviglumis] (GB:ABA34066.1); similar to pathogenesis-related protein 1 [Zea mays subsp. parviglumis] (GB:ABA34056.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) 0.124603952153089 1.05310212675924 0.315118204671448 1 -0.077255521407196 5.06743315430825 0.124603952153089 0.142203531581876
AT3G47060_at 5.88475039234655 6.00574865827767 6.25546343805794 6.14926036081168 6.38284286116882 6.03968963274959 6.05256785057113 6.0008649494034 5.79535333562417 5.58823399775831 5.50768612231899 5.56208692413727 5.77017134732089 5.85338550205038 4.98107846698933 5.82055404957319 6.06933673424237 5.74981661523633 5.70043656194516 0.19339363130456 0.201631783756849 0.197752652018152 0.191182301054804 0.192536722484722 0.1988217799546 0.191355207342453 0.201241789822186 0.191947256725920 0.194826501882106 0.189792775961182 0.188154383043804 0.184882433691849 0.193668195631842 0.189783442376790 0.188052007650679 0.191059669911960 0.210519889820556 0.190159191277477 3 3 + 17346816 17347555 17347145.909 17343970 17347951 + gene protein_coding_gene FALSE TRUE AT3G47060.1 FTSH7 (FtsH protease 7); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FtsH protease that is localized to the chloroplast similar to FTSH9 (FtsH protease 9), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G58870.1); similar to Os02g0649700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047584.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL56127.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0952104745025175 1.05288555273603 0.315213097170219 1 -0.0774635991399782 11.7758680689281 0.0952104745025175 0.0662026270208645
AT4G39300_at 5.12148298480767 5.42077824083672 4.95955473204922 5.27450103665139 5.54492078227899 5.00130756645314 5.46942858982178 5.37092250150598 4.21736514756769 4.21552959657821 4.05944739644963 4.10980888847013 4.1499997997456 4.08614690425734 4.4953682334206 3.89881623652201 4.55175141115779 4.01199186061761 4.31850480906153 0.198255477843601 0.197885688565266 0.193140175360723 0.190931579040671 0.201697253107154 0.196559392973501 0.196915488141238 0.203654974822722 0.203272310194928 0.192268491967659 0.192969700215528 0.196828829925506 0.192020661634360 0.206363152683501 0.193950783829079 0.195751443713082 0.196323353455396 0.198994639420598 0.195713800083972 4 4|0 +|/ 18286829 18287188 18286952.625 18286739 18288332 + gene protein_coding_gene FALSE TRUE AT4G39300.1|AT4G39300.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13674.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82724.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13674.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11630.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82724.1) -0.115316113145283 -1.05249147082197 0.315385820248343 1 -0.0778421331731823 9.48080348383356 -0.115316113145283 0.121630175394967
AT2G37980_at 2.04522606784045 1.81491698639601 2.20056054566005 1.95988485415595 1.63495677835156 1.60107931326819 0.97933319656179 1.20639483927912 1.69147729303716 1.42520973686744 1.75620884324827 1.11537741768338 1.85959720528969 1.50154522924689 1.76478430558399 1.05868374161701 0.970794132290364 1.74053860301959 1.73154631856663 0.194716594134323 0.194716594134323 0.196468865137814 0.199114939075366 0.201775346495556 0.194716594134323 0.198428223346447 0.211710404041631 0.210943776113236 0.194716594134323 0.196866333168349 0.194716594134323 0.206592336280460 0.201588998449471 0.203431540627586 0.194716594134323 0.197757931403127 0.206473275850739 0.200687319471907 2 2 - 15901293 15901868 15901565.455 15901135 15904688 - gene protein_coding_gene FALSE TRUE AT2G37980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01100.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54100.1); similar to Os05g0451900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055708.1); similar to putative axi 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD82651.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.0962580011316239 1.05226855514622 0.315483553922082 1 -0.0780562038267859 3.22380355647471 0.0962580011316239 0.0700116236196383
AT2G41980_at 5.89808209135713 5.78167357196657 4.99658130376644 4.41438230614759 6.0715046631514 5.35683157516357 6.49557662165619 6.07351714287964 4.68257976577472 4.35537979963687 5.27617184593125 5.62934467831233 5.43404906259239 5.26126668031758 4.858677424903 5.08189766768366 4.28481553856578 4.84587063104566 4.50445036475242 0.226215462849173 0.220920587177289 0.225184357205634 0.220622861429295 0.219171127611172 0.226523285479532 0.22136648182752 0.219171127611172 0.226302724356766 0.223251795290007 0.219679812618159 0.224064424159505 0.219171127611172 0.219171127611172 0.22859673654269 0.221352754444793 0.23399514463933 0.225912121080731 0.222322768494651 2 2|0 -|/ 17530590 17531276 17530953.9 17530572 17531770 - gene protein_coding_gene FALSE TRUE AT2G41980.1 seven in absentia (SINA) family protein Identical to Putative E3 ubiquitin-protein ligase SINAT1 (EC 6.3.2.-) (Seven in absentia homolog 1) (SINAT1) [Arabidopsis Thaliana] (GB:P93748); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G58040.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.141256173563337 -1.05195651855678 0.315620399344992 1 -0.078355798204472 10.4350928267895 -0.141256173563337 0.176600435372662
AT1G32500_at 9.23468079691449 9.36080039274364 9.34846811253664 9.31822596052205 9.39463981830295 9.07049058653357 9.7034691229757 9.52300712443264 9.23951265551685 9.09274943140258 9.48337712000846 9.53507523061901 9.23227243161628 9.5208484653411 9.71959052685724 9.47846958969174 9.047844228874 9.4747182649299 8.88614650691383 0.122027358767353 0.117697826426328 0.116665081500672 0.115676885520816 0.119168198621491 0.129351754961245 0.120783354009939 0.118089339620121 0.127459449652986 0.114658896083173 0.113430021719264 0.115951042284384 0.120753556721202 0.129939392976139 0.120176456758850 0.115468414433298 0.122731552163253 0.119800919733852 0.119039779743573 1 1|0 -|/ 11750071 11751118 11750451.5 11749803 11752086 - gene protein_coding_gene FALSE TRUE AT1G32500.1 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data. Identical to Protein NAP6, chloroplast precursor (Non-intrinsic ABC protein 6) (Plastid SufD-like protein) (NAP6) [Arabidopsis Thaliana] (GB:Q9LQK7;GB:Q8LCI4); similar to ATABC1 (ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT4G04770.1); similar to Os01g0127300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041902.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54531.1); contains InterPro domain SufBD; (InterPro:IPR000825) 0.0955941889191538 1.05140242056466 0.315863511914219 1 -0.0788876266143741 18.6238864127969 0.0955941889191538 0.0680129041875263
AT4G34700_at 10.3979884953789 10.4903650361041 10.2839834292853 10.4431848313079 10.2580538755925 10.1217080328155 10.3816095142377 10.5108386054916 9.88290317297552 10.1481292243736 10.5975550583462 10.4955531154467 10.2477459610086 10.3418784232750 10.5302840933298 10.4167117573379 10.1990546929904 10.1187816938278 10.0289364923538 0.0877102430048636 0.0865543885358661 0.0858118450268263 0.0859474615614565 0.0854731267841527 0.090301264542656 0.090499964528806 0.088035529628871 0.105511784644123 0.0919382173795014 0.0875686185179497 0.0881547581318882 0.0866328270769258 0.088731024897209 0.0875085381520618 0.0872039008936587 0.0924120022575773 0.0910606167805269 0.087689149919827 4 4|0 +|/ 16556910 16558182 16557358.375 16556830 16558851 + gene protein_coding_gene FALSE TRUE AT4G34700.1 complex 1 family protein / LVR family protein similar to Os06g0714100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058571.1); similar to hypothetical protein CX157 [Homo sapiens] (GB:AAK67625.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) 0.0899940494957807 1.05131631937353 0.315901301739613 1 -0.0789702471934757 20.5551840921998 0.0899940494957807 0.0455133300453895
AT3G44900_at 0.740951172594962 0.157494663183410 0.318221798773224 0.152975890461313 0.456518987236247 0.327400787989139 0.252253249400551 0.245436259341237 0.673365565075227 0.813121651310387 0.182649933834704 0.56719703832424 0.225967200192958 0.193493097675010 0.639907220705509 0.107234860182255 0.318628378217531 0.734702312654282 0.176638044043698 0.228384078549161 0.223275589271921 0.229926296951274 0.228357504753226 0.230110145860516 0.233853655014484 0.226310969701705 0.227582604266968 0.228546278925872 0.223753009085098 0.231041663462213 0.222948704659252 0.234408271939320 0.230486686725497 0.229014107665066 0.231298918266852 0.226113794036948 0.234547782975187 0.225974325943260 3 3 + 16401746 16402267 16401960.818 16399709 16402345 + gene protein_coding_gene FALSE TRUE AT3G44900.1 ATCHX4 (CATION/H+ EXCHANGER 4); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX3 (cation/hydrogen exchanger 3), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G22900.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE79315.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.109203525800759 -1.05088415844781 0.316091028456313 1 -0.079384856283601 0.794205397139051 -0.109203525800759 0.107300267784286
AT1G75460_at 10.8921544502430 11.1380199480724 11.2058737565753 11.2104115817380 10.9592092228228 11.0886145585371 11.6944710418922 11.854329969689 11.6981429097273 11.7210736293723 11.8772573541913 11.6409702668179 11.7391420190903 11.8740159675343 11.5162906838163 11.9360716977923 11.5678736930674 11.8313211872266 11.5411735073331 0.07935544297783 0.0789551753698856 0.078491967674082 0.0795426400435727 0.0771794708876751 0.0817261257400781 0.0777510374788529 0.0783260901246724 0.0824392121265345 0.0796151387917506 0.0789244049615635 0.0776257000285926 0.081988644202784 0.0770124208625984 0.0842156856066036 0.0767124750736715 0.0833393386105502 0.0825762736008662 0.0785084995304154 1 1 + 28331933 28332428 28332097.091 28331547 28333425 + gene protein_coding_gene FALSE TRUE AT1G75460.1 ATP-dependent protease La (LON) domain-containing protein similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19740.1); similar to Os07g0509700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059749.1); similar to hypothetical protein all4335 [Nostoc sp. PCC 7120] (GB:NP_488375.1); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111) -0.09215603133735 -1.05038500773609 0.316310271265431 1 -0.0798635644600248 22.9560511699477 -0.09215603133735 0.0554777335391891
AT3G50310_at 2.42509275058125 2.8201617062534 3.15330347673623 3.4690660128173 2.68682411412050 2.51711965693708 2.64477803927726 2.68511190417602 2.32759556066514 2.13110017940505 1.52723826082973 1.76964969697688 2.84951755482462 2.10590184373492 1.48775681431684 2.75940101371078 2.58078955594038 1.83493758541278 2.20186548892175 0.191939313911708 0.191152340047388 0.196281661493249 0.200235485854724 0.201154451496708 0.189727683675058 0.205947242520211 0.187879727018575 0.193666727628899 0.205226683642554 0.192457522917619 0.200605197297974 0.191304327851742 0.200027636176784 0.194374863019769 0.195100139085204 0.191714313748445 0.187879727018575 0.196278823308213 3 3 - 18659278 18659843 18659552.091 18659133 18660503 - gene protein_coding_gene FALSE TRUE AT3G50310.1 MAPKKK20 (Mitogen-activated protein kinase kinase kinase 20); kinase member of MEKK subfamily similar to MAPKKK19 (Mitogen-activated protein kinase kinase kinase 19), kinase [Arabidopsis thaliana] (TAIR:AT5G67080.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93553.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.103502089734256 1.04998282081825 0.316487007427145 1 -0.0802491473796688 4.96747526613689 0.103502089734256 0.0925821235570945
AT3G29010_at 2.78443251028346 3.09547968714724 2.76683859189456 2.85716676775466 2.90233691109112 2.95904222491435 2.66794105552314 2.74774126485122 2.73234340672736 2.74025672632905 2.96417399754013 3.07243700322428 2.83820854796248 2.96422663007389 2.97950079561647 2.92240495794667 2.86832605996099 2.83360484370279 2.90388540204323 0.213067258000520 0.202001460817225 0.206341800776152 0.213868138490592 0.202925153306651 0.206166584673532 0.205477282787227 0.200137770553356 0.219577192525684 0.202318856466509 0.203832119686882 0.205079670770825 0.204908599704527 0.204910439759745 0.2024678926604 0.200791222810974 0.225222089927615 0.208048359214185 0.209781394407022 3 3|0 +|/ 11008579 11009147 11008772.6 11008477 11009214 + gene protein_coding_gene FALSE TRUE AT3G29010.1 similar to Biotin/lipoate A/B protein ligase [Medicago truncatula] (GB:ABE80361.1) 0.0928230019663294 1.04922843348079 0.316818713405097 1 -0.0809720711661094 5.70888347645081 0.0928230019663294 0.0585562086081171
ATMG00010_at 2.32071678049836 2.51239712661599 2.64448270783243 2.15877489217377 2.11025462865938 2.17156011995284 2.53913520127964 2.13298310564016 2.6304934192492 2.68333191962493 2.92773650199023 2.39133540252837 2.48719378431622 2.37751594696316 2.90985113905941 2.34920455410404 2.37077780758837 2.61962996504606 2.70640514918575 0.209398148410088 0.213165961126984 0.209398148410088 0.215194603185848 0.229345892662903 0.228212529124283 0.221100201797473 0.212617976081557 0.210444858220109 0.211379261383053 0.209398148410088 0.212465578644309 0.219383097423362 0.231024998091969 0.226747790615205 0.213033056004139 0.224863421436031 0.214674617490612 0.222262895759076 M M - 303 694 474.4 273 734 - gene protein_coding_gene FALSE TRUE ATMG00010.1 Identical to Hypothetical mitochondrial protein AtMg00010 (ORF153a) [Arabidopsis Thaliana] (GB:P93275) -0.112147245670539 -1.04919590668691 0.316833021373317 1 -0.0810032319845966 4.93757097052463 -0.112147245670539 0.114970220797308
AT1G80780_at 9.75279575569327 10.0081574580462 10.3116909963047 10.3073399114220 10.7271477295131 10.2863526883995 10.4719246159849 10.5491386541223 9.9526314940963 10.1889092375380 10.2133249123483 10.0094708786077 10.3824468441571 10.1336553160444 9.73165850442114 10.5804593458354 10.2959620634189 10.2618017028954 10.4865394833831 0.110701114421412 0.104008507773075 0.110474330015796 0.116139019364743 0.101999505243967 0.102948594337835 0.103523933534693 0.105391840714039 0.112633156903479 0.103661364924797 0.101999505243967 0.105714852160851 0.106678501774606 0.108612108992714 0.107274927314608 0.105165933645863 0.106473749727298 0.104014387282303 0.103253210870907 1 1 + 30363641 30364149 30363888.545 30363007 30364265 + gene protein_coding_gene FALSE TRUE AT1G80780.1|AT1G80780.2 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G32070.1); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.102183042370871 1.04898802009670 0.316924478487995 1 -0.0812023700030573 20.507047235005 0.102183042370871 0.089167800026279
AT3G32280_at 0.822013161770571 1.00395026977527 0.996769666640621 1.3428196457735 0.635018016472558 1.16083945303868 0.919494317626166 1.15981272331761 0.895178948532778 0.79136176112613 1.10118033739979 1.0541475639198 1.13008210834972 1.04215309174887 0.974971359433351 1.18052806249678 1.30294500846083 -0.0474630072800222 0.700718353159879 0.182899065974379 0.182899065974379 0.184155118467188 0.183365259197718 0.183754613295217 0.182899065974379 0.18468047105271 0.185579950227491 0.184908222597017 0.182899065974379 0.185040719271912 0.187521651990499 0.188833832752541 0.183952197635806 0.182899065974379 0.186552493579473 0.182899065974379 0.196548422892912 0.194257726432201 3 0|3 /|+ 13243670 13243798 13243742.286 13237545 13243867 + gene protein_coding_gene FALSE TRUE AT3G32280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31900.1); similar to Os07g0434500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059497.1); similar to putative SNF2 domain/helicase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84084.1); contains domain Ribosomal protein S5 domain 2-like (SSF54211); contains domain ATP-DEPENDENT HELICASE (PTHR10799:SF41); contains domain ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED (PTHR10799) 0.114554560992740 1.04886206822277 0.316979899067259 1 -0.081323006004104 1.88662520005474 0.114554560992740 0.120778371988409
AT3G24010_at 7.67204714956035 7.66217383788122 7.6412743844294 7.51450047751536 7.78070665810337 7.89911900692574 7.59096898535829 7.58441399520071 7.18495342416234 7.47294048714486 7.40563597325986 7.16163251839677 7.37003996116715 7.27763927663099 6.88994728363374 7.37714812604686 7.37081014838407 6.87509990871596 7.75707731993779 0.175317677201483 0.174279374567311 0.174037292269637 0.174803434337207 0.177877135256103 0.185169427742845 0.186637981643750 0.169325059115450 0.178496922913783 0.180330189373516 0.178257884298691 0.175734698791170 0.169325059115450 0.171515203800295 0.178612475305890 0.169325059115450 0.176057928939250 0.193318994680950 0.172186249291277 3 3 - 8676151 8677095 8676531.727 8675965 8678227 - gene protein_coding_gene FALSE TRUE AT3G24010.1 PHD finger family protein similar to PHD finger protein-related [Arabidopsis thaliana] (TAIR:AT1G54390.3); similar to hypothetical protein LOC322113 [Danio rerio] (GB:NP_001018304.1); similar to Os03g0143600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048939.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0870818939044586 -1.04842334260967 0.317173001144223 1 -0.0817431242458627 15.0119761751773 -0.0870818939044586 0.0300903983978468
AT3G48450_at 2.20166966597995 2.67418099390648 2.35743855368217 2.63024539253887 1.84406785198935 2.39322372423605 2.16630266535201 2.38338645583035 2.72185446505333 2.87364201127011 2.68717899405566 2.44800235795794 2.65463291698095 2.98478740758283 2.45747540457042 2.18560967546681 2.45252762857165 2.41218446139866 2.59568685573003 0.175021712750990 0.176984027931942 0.176301256252783 0.173890051000739 0.175339887317540 0.183782407600381 0.193976842721412 0.173318634383964 0.172627318319926 0.175954121552278 0.170796437579155 0.176010284504760 0.173978020074696 0.176776414433244 0.170796437579155 0.178249906799792 0.178909989350293 0.183954034721710 0.184615451464105 3 3|0 -|/ 17955409 17955540 17955474.7 17955014 17955873 - gene protein_coding_gene FALSE TRUE AT3G48450.1 nitrate-responsive NOI protein, putative similar to nitrate-responsive NOI protein, putative [Arabidopsis thaliana] (TAIR:AT5G63270.1); similar to Os04g0620600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053908.1); similar to Nitrate-induced NOI [Medicago truncatula] (GB:ABE84626.1); similar to Os09g0253000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062688.1); contains InterPro domain Nitrate-induced NOI; (InterPro:IPR008700) -0.122617826425151 -1.04827367882165 0.317238894790486 1 -0.0818864082009254 4.96416156285987 -0.122617826425151 0.139132943864437
AT2G39010_at 11.0903282064052 11.4790090423819 11.2116871598371 11.404866240479 11.7904987733178 11.5776711603574 11.8601553058283 12.0887051043066 12.2376767661182 11.950995227308 12.7322906505201 12.4866768360891 12.6750975550361 12.5577181016039 12.3157607851601 12.2597147576055 11.7818936683993 12.6281627166897 12.0803954363142 0.0848603911958165 0.0799706239384434 0.0869600027227563 0.0804815562660664 0.0825132443683036 0.0890717951490028 0.0805611727578257 0.0814389371212828 0.0847470568355575 0.0861855926352072 0.0832283089477667 0.0807008180160057 0.0799706239384434 0.0830255695335433 0.0801707126733532 0.0799706239384434 0.0873883532291167 0.0806467406009227 0.0816631418384682 2 0|2 /|+ 16299463 16300787 16300075.222 16298555 16301112 + gene protein_coding_gene FALSE TRUE AT2G39010.1 PIP2;6/PIP2E (plasma membrane intrinsic protein 2;6); water channel Identical to Probable aquaporin PIP2.6 (Plasma membrane intrinsic protein 2e) (PIP2e) (PIP2.6) [Arabidopsis Thaliana] (GB:Q9ZV07); similar to PIP2,5/PIP2D (plasma membrane intrinsic protein 2,5), water channel [Arabidopsis thaliana] (TAIR:AT3G54820.1); similar to putative aquaporin [Vitis vinifera] (GB:ABH09326.1); similar to aquaporin [Vitis vinifera] (GB:AAV69744.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.103303329704270 1.04813888747794 0.317298249205083 1 -0.0820154396492586 23.8225418876815 0.103303329704270 0.0925351545778587
AFFX-ThrX-5_at 3.04087417046804 3.08282729969638 4.07285993340179 3.13757122846923 5.06406077836735 3.12264360724845 5.30245593789046 3.47573935510761 4.88367708038911 5.51014321367364 4.74601594226308 5.10856474666702 4.64581133878718 4.63713423230513 4.30715203941693 4.67461359348815 4.35565699152029 4.38909026683797 5.73424931719595 0.169680938147886 0.159627500403403 0.158170798438857 0.161067100282874 0.159377741001480 0.168904167830371 0.158675609559262 0.160325982183942 0.159799697415688 0.160925952456525 0.156248780915836 0.157279046143596 0.158976877168595 0.155702536975727 0.159852094493498 0.155702536975727 0.159343985530522 0.155702536975727 0.163311727110434 NA NA NA NA NA FALSE FALSE -0.322104306880547 -1.04810139529484 0.3173147601011 1 -0.0820513273530531 8.77939308766297 -0.322104306880547 0.488937437488518
AT3G12140_at 5.8995453105888 6.44919033968695 5.88620626901472 6.04998152154746 6.9940437424118 6.5567519567861 6.4580984698146 6.38339098495029 5.79866060492059 6.0881275727325 5.80687093655832 5.43499661091882 5.70525486838691 5.70235750832207 5.30824884352857 5.55032148492556 5.84711909608694 5.3610394803405 5.80323274011914 0.231192523673029 0.223304315373384 0.234296136971625 0.247805313485011 0.224697043939625 0.230614779016388 0.221119013849704 0.221319710210049 0.239174427672631 0.227545858031687 0.227774594262581 0.221119013849704 0.232853587432631 0.227877339886965 0.226586374801019 0.230657628365594 0.24770449700554 0.231676198021523 0.221645617057265 3 3|0 -|/ 3868959 3870258 3869516.9 3868594 3871734 - gene protein_coding_gene FALSE TRUE AT3G12140.1|AT3G12140.2|AT3G12140.3 emsy N terminus domain-containing protein / ENT domain-containing protein similar to emsy N terminus domain-containing protein / ENT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06780.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAL87186.1); similar to Os08g0328300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061559.1); similar to Os09g0279000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062755.1); contains InterPro domain ENT; (InterPro:IPR005491) -0.116478969722043 -1.04795755353424 0.317378111445143 1 -0.0821890038469879 12.0777509457955 -0.116478969722043 0.125478033979752
AT3G03070_at 9.95382082882765 9.8563293998332 9.72989744875668 9.87233170272434 10.0421659658266 9.76737180416755 9.8052608040691 9.95787786623736 10.0905751376458 9.77155092352496 10.1974600338826 10.2312742891909 10.0980480815870 10.1874543626009 10.2380916183417 10.0676842187990 9.80863615713433 10.0678107977531 9.79134490716649 0.0798153154867129 0.0864725914610345 0.0862328275142358 0.079042797065079 0.0774718423949933 0.0962474799437077 0.0814121153173643 0.0853288133079607 0.0884304043952288 0.0811717376249254 0.0801141136042306 0.0774718423949933 0.0815264253925277 0.0778382532242201 0.0808130420979243 0.0801262976633318 0.0854354848240434 0.0841856066836654 0.0806946592647203 3 3|0 -|/ 696611 698051 697453.6 696306 698163 - gene protein_coding_gene FALSE TRUE AT3G03070.1 NADH-ubiquinone oxidoreductase-related similar to NADH:ubiquinone oxidoreductase 13 kD-like subunit [Chlamydomonas reinhardtii] (GB:AAQ64639.1); similar to Os08g0161700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061051.1); contains domain NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT (PTHR13156); contains domain SUBFAMILY NOT NAMED (PTHR13156:SF1) 0.0935933138795333 1.04759586768028 0.31753744837955 1 -0.0825351203440835 19.8714058614004 0.0935933138795333 0.0620578691907138
AT1G49750_at 11.6357335583268 12.0355439925918 11.4484683147052 11.5066502986795 11.0945764550806 10.9119900893775 11.4985173751997 11.7395719699607 11.7969515476760 11.6008781512684 12.0194088832902 12.3878644988411 11.8501812274267 12.0340957068392 11.6774626102572 11.9003745431736 11.5028190054221 12.3788494582263 11.6563360230573 0.0901410858976925 0.0869320750800743 0.086244675794534 0.0903477316971825 0.0878764506356326 0.0939109442079793 0.0864776154839734 0.0886044053800345 0.0994429248603802 0.0870286445842212 0.0862922192618385 0.086449296796752 0.086244675794534 0.0888955836547594 0.0906242133316822 0.0866240976494685 0.10278780116988 0.090728007626601 0.0875988471813462 1 0|1 /|- 18414964 18415390 18415136.2 18414597 18416469 - gene protein_coding_gene FALSE TRUE AT1G49750.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G19320.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABD32635.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.101380175104179 -1.04733579068139 0.317652059608915 1 -0.082783942661568 23.3106834562494 -0.101380175104179 0.0873332367678062
AT3G27840_at 1.71373741974627 1.97383787474161 1.86236598191971 1.88778850467132 1.62512045194295 2.16839762940752 1.97945979177629 2.14520767533524 1.93555875149989 2.25440132960986 1.63399181893383 2.01268609261441 2.24225877866002 1.99974862569728 1.94473983208338 2.04853410728448 2.26102323396227 2.19993854845642 2.39221149253343 0.234455228092534 0.245204841830751 0.248022848969502 0.241111742956230 0.235448985387959 0.235332366785438 0.234455228092534 0.236075024790246 0.247399817147793 0.235186734155206 0.237211719234491 0.245375369283334 0.239387970031222 0.234455228092534 0.246686323945656 0.236335969405721 0.25030300883071 0.244175468471814 0.234455228092534 3 3 + 10324691 10325143 10324905.091 10324591 10325187 + gene protein_coding_gene FALSE TRUE AT3G27840.1 RPL12-B (RIBOSOMAL PROTEIN L12-B); structural constituent of ribosome 50S ribosomal protein L12-B Identical to 50S ribosomal protein L12-2, chloroplast precursor (CL12-B) (RPL12B) [Arabidopsis Thaliana] (GB:P36211;GB:Q9LK93); similar to RPL12-A (RIBOSOMAL PROTEIN L12-A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G27830.1); similar to 50S ribosomal protein L12, chloroplast precursor (CL12) (GB:P02398); contains InterPro domain Ribosomal protein L7/12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) -0.10916730495868 -1.04708506016348 0.317762581333965 1 -0.0830237760311547 4.03795057665557 -0.10916730495868 0.108200136993218
AT1G16380_at 2.05429696485550 1.45322720324958 2.05503005005847 2.36331135121256 1.80022861333792 2.02289834737596 1.94785238953104 1.92153592143173 2.15831318547929 2.27163708220627 2.4029337696954 2.24219482159323 2.32698852466207 2.15911788170604 2.19527962770989 2.05986956449403 2.04024183564243 2.23007290237047 2.14795410893534 0.222753955681929 0.219556852532377 0.220985538546745 0.216409016644643 0.221292556487775 0.225390379941289 0.218029131521607 0.226803987995641 0.215349019141775 0.212732475630871 0.215153520769079 0.214019775532827 0.215706356775888 0.211676653099592 0.211010304197638 0.220147700559992 0.214551652078226 0.216495861926144 0.20983362908077 1 1 - 5598523 5599132 5598892.364 5598447 5601361 - gene protein_coding_gene FALSE TRUE AT1G16380.1 ATCHX1 (CATION/H+ EXCHANGER 1); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX2 (CATION/H+ EXCHANGER 2), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G79400.1); similar to Sodium/hydrogen exchanger [Medicago truncatula] (GB:ABE93142.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.115295772253246 1.04627390341308 0.318120335517131 1 -0.0837993629024133 4.15215868422717 0.115295772253246 0.123172693152307
AT4G33870_at 0.880168758644357 0.880747106405315 1.61806730952466 0.9708528562832 0.813338418305028 1.15817237222176 0.814959834931862 1.21274298572995 1.00180506968759 0.99423498433594 1.05178778204520 1.05925201263099 1.09579168889875 0.615324930845397 1.13199249386894 0.892140799260197 1.48711244316838 0.595716430636224 0.808008728627806 0.230591083611472 0.237905487103265 0.235869800384024 0.243074218473060 0.234560473086740 0.235195523135517 0.240191913857041 0.228910826769414 0.243509867274761 0.245134059650151 0.23449000549263 0.226891351101751 0.23736388666242 0.24046702134063 0.226891351101751 0.228329858147221 0.231039261436787 0.234537543186437 0.227955580720437 4 4|0 -|/ 16234687 16235601 16235110.25 16234675 16236497 - gene protein_coding_gene FALSE TRUE AT4G33870.1 peroxidase, putative similar to peroxidase [Arabidopsis thaliana] (TAIR:AT2G41480.1); similar to Putative Peroxidase 48 (Atperox P48) (GB:O81755); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.124704981387304 1.04544274557034 0.318487223609015 1 -0.0845935732857254 2.00654258036562 0.124704981387304 0.144376631472925
AT1G07220_at 4.94198029908893 5.20757681660339 4.78527766079436 4.68360022841647 4.36979990325347 4.12022486722427 4.42127445379511 4.08533254999332 3.85871473456673 3.93511842071553 3.97667920500560 4.03343780967271 3.7108161725222 4.20834853262061 3.91519877868308 4.44887365018143 4.23400471325823 3.28327001766276 4.21984568885553 0.22043608584484 0.213917115478737 0.211086202163285 0.214388792376039 0.214068147733477 0.214220684763790 0.219284340474213 0.216703495886694 0.209105866770281 0.208274106449303 0.214114429227828 0.209871082785105 0.209367297758823 0.210217357966977 0.221341881679854 0.208274106449303 0.216231224420031 0.214668303540421 0.211263190183943 1 1 - 2217185 2217810 2217473.455 2216928 2219473 - gene protein_coding_gene FALSE TRUE AT1G07220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23850.1); similar to OSIGBa0159I10.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67462.1); similar to Os02g0642700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047557.1); similar to Lipopolysaccharide-modifying protein [Medicago truncatula] (GB:ABD33425.1); contains InterPro domain Lipopolysaccharide-modifying protein; (InterPro:IPR006598); contains InterPro domain Protein of unknown function DUF821, CAP10-like; (InterPro:IPR008539) -0.101273184854908 -1.0454042764632 0.318504212230038 1 -0.0846303200548305 8.56732745972788 -0.101273184854908 0.0875636884980879
AT4G19210_at 9.40225442089742 9.46174660952966 9.5131557912848 9.46244944777894 9.40079149048582 9.17138713040128 9.4737048246091 9.5043919881973 8.4638977581821 8.73228757711407 9.09098660164491 9.11677784737934 8.595132934532 8.46404473805646 8.95549806743321 8.51896770916487 8.66825532953363 8.83245563016279 8.3908178350382 0.117390833727424 0.111931775452333 0.113513880892066 0.115429621870474 0.116468984301739 0.111931775452333 0.115929488760532 0.111931775452333 0.141119909197696 0.113280504588260 0.113000897255973 0.111931775452333 0.116989261888299 0.122849751091600 0.119533652081173 0.114084882311383 0.119059587941623 0.119391747601959 0.118859587611871 4 4|0 +|/ 10504061 10504755 10504402.778 10501211 10505228 + gene protein_coding_gene FALSE TRUE AT4G19210.1 ATRLI2 (Arabidopsis thaliana RNase L inhibitor protein 2) member of RLI subfamily similar to ATRLI1 (Arabidopsis thaliana RNase L inhibitor protein 1) [Arabidopsis thaliana] (TAIR:AT3G13640.1); similar to RNase L inhibitor-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19067.1); similar to 68 kDa protein HP68 [Triticum aestivum] (GB:AAL26702.1); similar to PREDICTED: similar to CG5651-PA, isoform A [Tribolium castaneum] (GB:XP_968009.1); contains InterPro domain ABC transporter, ABCE; (InterPro:IPR013283); contains InterPro domain Possible metal-binding region in RNase L inhibitor, RLI; (InterPro:IPR007209); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.0888426523198089 1.04534490438223 0.318530433295281 1 -0.084687031799111 18.0783681699063 0.0888426523198089 0.0422758468914968
AT4G24890_at 0.669716040916179 0.447375428440963 0.706224060408172 0.44226110262247 0.881938632747279 0.712157952369483 0.66213086830374 0.932560303947009 0.716558828894593 1.04316152718597 0.705050905144932 0.544915365403497 0.196612157537037 1.11407700624593 0.511841839384306 0.768390003130917 0.856270616607236 0.799452196522625 0.919607900525172 0.239243106521358 0.23678979048652 0.240097848033007 0.236294240928539 0.234090096615087 0.230076594482012 0.237183886101786 0.237589224804166 0.231275804679086 0.236844888165270 0.235365959515378 0.230353413041451 0.236262525754596 0.230723367628390 0.231630296204996 0.230076594482012 0.249351306129675 0.246310361788536 0.230076594482012 4 4 - 12811540 12812174 12811821.545 12811489 12814459 - gene protein_coding_gene FALSE TRUE AT4G24890.1 ATPAP24/PAP24 (purple acid phosphatase 24); acid phosphatase/ protein serine/threonine phosphatase similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G13750.1); similar to ATPAP27/PAP27 (purple acid phosphatase 27), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G50400.1); similar to putative metallophosphatase [Lupinus luteus] (GB:CAD12839.3); similar to diphosphonucleotide phosphatase 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99049.1); similar to diphosphonucleotide phosphatase 1 [Lupinus luteus] (GB:CAD12836.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.09916669049332 -1.04531597621231 0.318543209707286 1 -0.0847146628221072 1.47188838877723 -0.09916669049332 0.081366863496566
AT4G36590_at 0.84454753389783 1.37158734168801 1.12251718338259 0.860004157848186 0.870216453656753 1.07989621162329 1.05017805293360 1.08563485180412 1.51046815479989 1.30133684908506 1.11712983535969 1.03603539260533 0.907941184994333 1.38106405522599 1.33043460857146 1.34320951803629 1.52557903451337 1.33250395149136 1.26806081026529 0.20544731010745 0.212691671141863 0.215867707420509 0.207612937998651 0.207073454709417 0.214720959638147 0.203274385921295 0.211747389547632 0.215530777588915 0.201328538109573 0.209423934330991 0.205008555306457 0.212679178713514 0.219691995766483 0.200963407309977 0.203472601280791 0.209520446965234 0.218314996402649 0.206310806855892 4 4|0 -|/ 17261188 17262000 17261633.9 17260942 17262232 - gene protein_coding_gene FALSE TRUE AT4G36590.1 MADS-box protein (AGL40) similar to MADS-box protein (AGL62) [Arabidopsis thaliana] (TAIR:AT5G60440.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE91589.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.109023258618436 -1.04518177173001 0.318602487457358 1 -0.0848428415068107 2.33891895784587 -0.109023258618436 0.108336481286370
AT3G19460_at 3.82188728244635 4.49981749801523 4.94241750093179 4.36234091145439 5.54247725783264 4.31430471720045 4.93583899708302 4.62317485257459 4.7361796875756 4.41159003534164 4.83932031713222 4.63829859751076 4.85615440641497 4.25407193962989 4.25566217916522 4.56013466913128 4.30773991205263 4.59692144762189 4.28916974406472 0.249276162009180 0.222149328800873 0.240858028156865 0.234962464328021 0.223609201092314 0.250189608930305 0.227157320936541 0.226214584641240 0.236163502247884 0.23815412457403 0.230914351672960 0.227153465985987 0.226875538035043 0.247337269026436 0.229706596246402 0.224132405600253 0.246188658500208 0.231875272848375 0.225215716416757 3 3|0 +|/ 6747635 6748774 6748229.889 6747376 6749313 + gene protein_coding_gene FALSE TRUE AT3G19460.1|AT3G19460.2 reticulon family protein (RTNLB11) similar to reticulon family protein (RTNLB10) [Arabidopsis thaliana] (TAIR:AT2G15280.1); similar to Os04g0670000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054209.1); similar to H0818H01.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86090.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.189881775290028 1.04506362566994 0.318654679075859 1 -0.084955671855052 9.13904125514714 0.189881775290028 0.268220486892648
AT3G60250_at 7.1040541692426 7.54081348890468 7.39744279487873 7.46247008593479 7.90378569978968 7.72280250871545 7.3411169120175 7.12969343703706 7.64816710035545 7.3600018818568 7.79570884842728 7.39098203257117 7.19110344154598 7.90083568952129 6.71731848526099 7.4998562570525 7.48035370345318 7.11768936436205 7.56720634734442 0.169818024135146 0.167459031290206 0.167459031290206 0.172638567042951 0.169036771626864 0.167459031290206 0.173215265851087 0.167931749111502 0.176142550292861 0.169149275675797 0.174878815228843 0.172253889870258 0.179717321738436 0.182565262868197 0.174238278361390 0.16901936817414 0.174861833084181 0.177267176761656 0.17210993287715 3 3 - 22281696 22282583 22282038.636 22281317 22283088 - gene protein_coding_gene FALSE TRUE AT3G60250.1 CKB3 (casein kinase II beta chain 3); protein kinase CK2 regulator Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis Identical to Casein kinase II subunit beta-3 (CK II beta-3) (CKB3) [Arabidopsis Thaliana] (GB:O81275); similar to CKB4 (CASEIN KINASE II BETA SUBUNIT 4), protein kinase CK2/ protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT2G44680.1); similar to protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum] (GB:CAD32500.1); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) 0.102155819225647 1.04450509883298 0.318901497703158 1 -0.0854889303581786 14.9062004308783 0.102155819225647 0.0903275810772824
AT1G05900_at 5.34912312769024 5.34536926535673 5.46730446706502 5.05461526224598 6.00474149552501 5.2152339133519 6.37535007051772 5.76357143368452 5.63827934661173 5.63489707485712 5.55690839689126 5.39970128898897 5.71657180469983 5.67076675990303 5.29753826940088 5.80687681093819 5.55189349008223 5.67671000141066 5.53545400709675 0.169188406597759 0.162693101208677 0.170185393279382 0.181791400494124 0.172139067092593 0.178726451645234 0.172641097604018 0.166161443252923 0.166986414597620 0.163329005363404 0.169572907193996 0.164543721135333 0.182023884755361 0.165697603380286 0.165393502544565 0.16732115281172 0.172571816356697 0.170047324617209 0.165773095544795 1 1|0 +|/ 1787648 1789012 1788444.625 1786855 1789673 + gene protein_coding_gene FALSE TRUE AT1G05900.1|AT1G05900.2 endonuclease-related similar to endonuclease-related [Arabidopsis thaliana] (TAIR:AT2G31450.1); similar to HhH-GPD; Helix-hairpin-helix DNA-binding, class 1; Endonuclease III/Nth [Medicago truncatula] (GB:ABE85980.1); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain Endonuclease III, HhH; (InterPro:IPR004036); contains InterPro domain HhH-GPD; (InterPro:IPR003265)|similar to endonuclease-related [Arabidopsis thaliana] (TAIR:AT2G31450.1); similar to HhH-GPD; Helix-hairpin-helix DNA-binding, class 1; Endonuclease III/Nth [Medicago truncatula] (GB:ABE85980.1); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain Endonuclease III, HhH; (InterPro:IPR004036); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.145567823248903 -1.04447316457907 0.318915614090895 1 -0.0855194129525577 11.1656624605853 -0.145567823248903 0.187020920117030
AT4G29710_at 0.991633481352963 1.01845036525853 1.28363225397499 0.976446333283205 1.05539804063302 0.888963223773528 1.37720522863495 1.18052356575941 1.45065333899575 1.24577791031994 1.27777571474326 1.15067288177918 1.28222248038613 0.995646058114448 1.36813499302796 0.904042824673972 1.17352505209083 1.19297187738096 1.10776960345101 0.178603576797259 0.185406731515339 0.181310789373601 0.177951359095839 0.178856306941405 0.185622226750130 0.176520648042403 0.182024495378018 0.17702832262216 0.183928880038352 0.180693518987659 0.187095306336405 0.179712275161025 0.179331957466245 0.176999504663830 0.178069758990995 0.188004168645855 0.180965926496134 0.181348732957188 4 4 - 14547023 14547322 14547192.273 14547007 14547408 - gene protein_coding_gene FALSE TRUE AT4G29710.1 phosphodiesterase/nucleotide pyrophosphatase-related similar to type I phosphodiesterase/nucleotide pyrophosphatase family protein [Arabidopsis thaliana] (TAIR:AT4G29700.1); similar to Type I phosphodiesterase/nucleotide pyrophosphatase [Medicago truncatula] (GB:ABE79240.1); contains InterPro domain Type I phosphodiesterase/nucleotide pyrophosphatase; (InterPro:IPR002591) -0.0953930814914586 -1.04432946405575 0.318979142018174 1 -0.0856565719076864 2.31462702968224 -0.0953930814914586 0.0695383856627708
AT3G19050_at 1.61056264324175 1.68886391242987 1.78730247062273 2.22649335162663 1.67390969982075 1.94444284590088 1.77805201409937 1.91543551014918 2.42430262204712 1.62439754854995 2.30025818533104 1.47389365271808 1.79133027819321 1.80794323994495 1.9666728259261 1.74858571264361 2.58595546540321 2.03591811074050 1.70290216132179 0.200744438192899 0.204711857861232 0.199505428304487 0.198576853690624 0.217286368250654 0.203266309926599 0.214992631654570 0.210302875297704 0.201987810879052 0.198576853690624 0.199579613915984 0.199675023809880 0.211425924978633 0.204004641077913 0.198886103441931 0.20613321156999 0.206956026131786 0.203949362863992 0.200885904627362 3 3|0 +|/ 6579797 6580794 6580362.111 6578053 6590194 + gene protein_coding_gene FALSE TRUE AT3G19050.1 POK2 (PHRAGMOPLAST ORIENTING KINESIN 2); microtubule motor PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls. similar to POK1 (PHRAGMOPLAST ORIENTING KINESIN 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT3G17360.1); similar to Kinesin, motor re (GB:ABD32417.1); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87264.1); similar to Kinesin motor domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99145.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Kinesin-related; (InterPro:IPR010544) 0.103213739284504 1.04418078161026 0.31904488234131 1 -0.0857984700376047 3.76864303657084 0.103213739284504 0.0933664997598774
AT3G02400_at 3.75900738024199 3.81768645742348 3.92520755647997 3.62934462248952 3.82929271043412 3.79102448841466 4.11501857734203 3.66498935723404 4.21715384414546 4.05892757577231 4.27890025854067 3.67857277404012 3.91868876567848 4.32432588344175 4.03445083632071 4.27588271884363 4.02907802543842 4.25056835974132 4.50429355841843 0.182575795985511 0.182375771326677 0.178394987514918 0.182927215996781 0.178659178171408 0.178649196456680 0.192812849857230 0.194466449038983 0.175327311668872 0.181256801855266 0.184515817756225 0.176948551151902 0.177662136262648 0.185352276551098 0.186051494766245 0.175835066258824 0.182882419144578 0.179182719316514 0.18207904795774 3 3 + 491052 491551 491355.818 489837 491594 + gene protein_coding_gene FALSE TRUE AT3G02400.1 forkhead-associated domain-containing protein / FHA domain-containing protein / AT hook motif-containing protein similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14490.1); similar to hypothetical protein B14911_03489 [Bacillus sp. NRRL B-14911] (GB:ZP_01168655.1); similar to conserved hypothetical protein [Entamoeba histolytica HM-1:IMSS] (GB:XP_656594.1); similar to Os03g0728500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051147.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) -0.103387319314455 -1.04365404415654 0.319277862168501 1 -0.0863010420604496 7.99591311652466 -0.103387319314455 0.0939877811501392
AT3G06890_at 2.65064353962519 3.00869493635617 3.41648386110831 3.66585806373092 2.55694986849316 2.48784447415830 3.08851165988703 2.61022669963148 2.58699533446911 2.55167474579915 2.68006459085878 2.97298818988161 2.28692340413772 2.44452766663837 2.47800935030588 2.40920434738651 2.67928850719716 2.81881572135486 2.56329531298493 0.201146287255756 0.203346508423275 0.204015083502736 0.202447328718117 0.202523793647887 0.201801957195402 0.209835862686184 0.215569317015015 0.206807933156770 0.205781900142331 0.207145892151517 0.205580852210759 0.203742915524042 0.205830569634486 0.200577625982668 0.20383045002479 0.204949454363321 0.202211194784785 0.201868748220140 3 3 + 2177005 2177301 2177137.091 2176862 2177592 + gene protein_coding_gene FALSE TRUE AT3G06890.1 similar to oxidoreductase/ transition metal ion binding [Arabidopsis thaliana] (TAIR:AT2G31940.1); similar to Os03g0343800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050080.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16010.1) 0.110585391233377 1.04339369954218 0.319393061449738 1 -0.0865493674452626 5.51742639785941 0.110585391233377 0.112674448948738
AT1G70870_at 1.27207887979702 1.36606119118644 1.56191256772994 1.62939062247770 1.43059994645899 1.10910796704193 0.973285890899548 1.34102027606371 1.23945060143180 1.21407348226931 1.73527127795279 1.21189954509847 1.22294377783002 1.36283126374854 0.757894956234078 0.930028944843484 1.30962557084946 1.40070039163626 1.24960399845088 0.183242795398384 0.187649374617360 0.184145384715817 0.184482626229845 0.185419944176137 0.183242795398384 0.185145771758140 0.186626439787066 0.196324473505914 0.183242795398384 0.196083128499901 0.196670841611652 0.184036708376235 0.190187298211156 0.184574232794801 0.187999020268377 0.186054646756530 0.194084223050597 0.185049543427506 1 1|0 -|/ 26724712 26725201 26724868.444 26724682 26725225 - gene protein_coding_gene FALSE TRUE AT1G70870.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT1G23120.1); similar to putative Bet v I family protein [Cicer arietinum] (GB:CAG34224.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.100832327540302 1.04333662656926 0.319418319687898 1 -0.0866037988980716 2.57331991441098 0.100832327540302 0.0868678622107355
AT4G35410_at 3.42449095955971 3.7617208414234 3.6486540501711 3.80552838419391 4.10409846181499 2.65652234699995 3.9161069120608 3.75137102807769 3.69467622076313 3.72927605344191 4.70392941928562 4.83466374378203 3.63075313190345 4.71067370274451 4.93297566822254 4.03361778074582 3.17087655791925 4.08919767910500 3.77663360847751 0.226294111111539 0.230372923895959 0.225239598270794 0.231378704824199 0.225018001134959 0.227250424809067 0.23227779617111 0.231436902619716 0.242651654708219 0.229176514691428 0.225714839868613 0.225018001134959 0.228418954040336 0.232975436091992 0.238228072047886 0.230357442401137 0.23314274575812 0.239185341749941 0.227350046356430 4 4|0 +|/ 16832936 16833773 16833322.7 16832486 16834014 + gene protein_coding_gene FALSE TRUE AT4G35410.1|AT4G35410.2 clathrin adaptor complex small chain family protein similar to AP19 (associated protein 19), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT2G17380.1); similar to AP-1 Gol (GB:AAB39510.1); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012)|similar to AP19 (associated protein 19), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT2G17380.1); similar to AP-1 Gol (GB:AAB39510.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.185042854208634 1.04330822068452 0.319430891564271 1 -0.0866308891754999 7.63199391704988 0.185042854208634 0.260212767508806
AT1G54020_at -0.158001283258217 0.0535494468518588 -0.590952855636603 -0.332882217880268 -0.294408121842983 0.0168825499526198 0.066841440561539 -0.094901644002173 -0.0649819543167078 -0.224735782288667 -0.0425487453112600 0.473912062687763 0.0985446561654648 0.415334272243936 -0.126776063970284 -0.0104772902426701 -0.188022343512557 -0.27357898129873 0.216548559810575 0.21482453999528 0.211593342072477 0.218055588662939 0.223197117968748 0.216125983135641 0.217017924180658 0.211593342072477 0.211593342072477 0.211593342072477 0.230621801873563 0.215633179168967 0.218183717092445 0.212356069499798 0.218045928903667 0.215284615706682 0.218370880385713 0.215526746960839 0.226467105968549 0.217470907793967 1 1|0 -|/ 20165541 20166232 20165854.556 20165338 20167416 - gene protein_coding_gene FALSE TRUE AT1G54020.1|AT1G54020.2|AT1G54020.3 myrosinase-associated protein, putative similar to myrosinase-associated protein, putative [Arabidopsis thaliana] (TAIR:AT1G54010.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.099761989973293 -1.0431098717502 0.319518687142402 1 -0.0868200351350087 -0.157279725533308 -0.099761989973293 0.0837872125377657
AT4G17870_at 9.0764797962464 9.48469626227586 9.35450272921272 9.70290296796408 10.0552681629021 9.80420953734596 9.90693550153644 10.0389079993565 9.86129269489865 9.71553090043778 9.75086490545283 9.18116172304124 9.41083184410898 9.72682296137893 8.8916063931542 9.90876704684369 9.36641482599812 9.43867403027369 9.75380217765996 0.129312624910642 0.125112426158689 0.121009424543278 0.123713868768346 0.123206025740300 0.135732903202832 0.126078276310055 0.126414405600959 0.14214026939812 0.123879587736995 0.124229188388233 0.131339062505593 0.12866034761838 0.125446661685706 0.124875002679274 0.124479056565388 0.134377792296034 0.128759820820146 0.126155067848131 4 4 + 9928865 9929329 9929073.545 9928691 9929531 + gene protein_coding_gene FALSE TRUE AT4G17870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46790.1); similar to Streptomyces cyclase/dehydrase family protein [Brassica oleracea] (GB:ABD65175.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) -0.107508165940795 -1.04309860400733 0.319523675146845 1 -0.086830779210527 19.2961219815785 -0.107508165940795 0.105047257547223
AT2G26500_at 13.1595340627702 13.2090055651780 12.8923765700667 12.9245887183994 13.0693456915510 12.8037827360624 13.3646683698075 13.4218481768397 13.3376328155477 13.3829516590347 13.8574034200528 13.7222183174276 13.3167885250962 13.5544811748034 13.6101995493943 13.3725794488672 12.9589471025200 13.5887615860532 13.2126831682859 0.068068306185301 0.0659281698528472 0.069076598053294 0.0683562109042012 0.0659281698528472 0.068494970625485 0.0669408531894051 0.0666474796712907 0.0714116337331389 0.0679964620398656 0.0673867809735087 0.0659281698528472 0.06738795898831 0.068609871599092 0.066865954510856 0.0659281698528472 0.0710473974823187 0.069456038983861 0.0674158892677328 2 2 + 11277457 11277764 11277632.636 11277213 11278031 + gene protein_coding_gene FALSE TRUE AT2G26500.1|AT2G26500.2|AT2G26500.3 cytochrome b6f complex subunit (petM), putative similar to unknown [Euphorbia esula] (GB:AAF34768.1); contains InterPro domain PetM of cytochrome b6f complex subunit 7; (InterPro:IPR012595)|similar to unknown [Euphorbia esula] (GB:AAF34768.1) -0.0898287191957818 -1.04305002592328 0.319545180359487 1 -0.086877098564324 26.5100245387425 -0.0898287191957818 0.0481074117122307
AT3G28900_at 8.194859000227 8.15103657086307 7.41321058182637 7.32601859365556 7.37746601955407 7.42347257849456 7.49043444270849 7.74931608649886 7.34843645008703 7.1628097271423 7.1737022967279 8.64379195448631 7.39158043867372 7.52395500728656 8.81660974501647 7.02212391617819 7.06143062675544 6.86731748899777 7.18175106190112 0.186617192810155 0.187415951875644 0.196594798544551 0.193852471534029 0.199564042055827 0.191473780002659 0.195849625894942 0.197304997652748 0.197593176179331 0.189705252028800 0.200385416526782 0.186617192810155 0.195900613359443 0.198846879887562 0.195844264013132 0.194542687499037 0.204441577504325 0.196130590805587 0.194227986227251 3 3|0 -|/ 10904168 10905626 10904955 10903884 10905695 - gene protein_coding_gene FALSE TRUE AT3G28900.1 60S ribosomal protein L34 (RPL34C) Identical to 60S ribosomal protein L34-3 (RPL34C) [Arabidopsis Thaliana] (GB:Q9LJW6); similar to RPL34 (RIBOSOMAL PROTEIN L34), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69620.1); similar to 60S ribosomal protein L34, putative [Solanum demissum] (GB:AAT39969.1); similar to 60S ribosomal protein L34 (GB:P41098); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.089902363568284 -1.04283694195118 0.319639524073967 1 -0.087080254307049 15.0375082412162 -0.089902363568284 0.0485353261152417
AT2G12320_at 1.8411244581248 1.66344054932455 2.17701727588554 1.89436663365528 2.02496171283306 1.87812971853991 1.88913642941072 1.82282270635718 2.10512657461786 2.01475411175635 2.53876886443627 1.83368819685217 2.33608491244839 1.98381219187063 1.85761628408939 1.81066752619355 2.1769141610665 2.19580991840861 2.16135356461192 0.158712557453026 0.159838395977827 0.160499346153232 0.160227163408219 0.156884194610827 0.163460820121442 0.156062855189748 0.159707840591149 0.155892448540765 0.159130740994747 0.162274633694754 0.159591937068139 0.157245408320913 0.160702169239905 0.158260522300124 0.159032201004269 0.159731063883762 0.166582349178626 0.158500109161713 2 2|0 +|/ 4942858 4942897 4942872.143 4942708 4943368 + gene protein_coding_gene FALSE TRUE AT2G12320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32169.1) 0.0937066530080595 1.04253929379930 0.319771343733374 1 -0.087363978267492 3.99158243914108 0.0937066530080595 0.0641517400032346
AT4G32560_at 5.17550922990449 5.2735684806435 4.77497596383096 4.86261880302416 5.2737070138218 5.13155593407306 4.83575268507379 5.07048738512611 4.41569043641431 4.52133911698743 4.32150303500060 4.18442355934534 4.62885086147444 4.52351155145496 4.3291934146159 4.39078754606791 4.42584419338195 4.19701084194912 4.49875122329788 0.205354305200391 0.20906651488775 0.21846108414295 0.203169660738243 0.213534813449695 0.207805328086748 0.214242934992584 0.215807085027444 0.225995478460076 0.209440722242807 0.205896372786281 0.214078650592707 0.217686882638293 0.218938004046932 0.217164158588122 0.209969448948615 0.210255115320956 0.211648409559740 0.205408344663739 4 4|0 +|/ 15714522 15716015 15715157.333 15713742 15716665 + gene protein_coding_gene FALSE TRUE AT4G32560.1|AT4G32560.2|AT4G32560.3 paramyosin-related similar to MGC89046 protein [Xenopus tropicalis] (GB:NP_001008173.1); contains domain FIDIPIDINE (PTHR16441)|similar to coiled-coil domain containing 93 [Gallus gallus] (GB:NP_001026433.1); contains domain FIDIPIDINE (PTHR16441) -0.0907839916607054 -1.04235272541838 0.319853990118544 1 -0.0875417856468154 9.47663904575947 -0.0907839916607054 0.0526621557567688
AT1G13220_at 4.33685095169512 4.61718360123056 4.38185543609821 4.31203523039187 4.83535801156531 4.70844436733102 4.62683067558611 4.7366214911188 4.60566108886281 4.36297142202241 4.95815909463462 4.97251265620309 4.61575736410845 4.75049902457214 4.69907419917183 4.97341290374794 4.59198999546194 4.58235083093923 4.72355966382791 0.194087777090684 0.200570726846652 0.194273321214922 0.201782599180068 0.198126094880314 0.204638042950354 0.196155869412427 0.195757011354044 0.19951267225935 0.203459304817582 0.206720708614846 0.194778616166843 0.202492500509239 0.201022219968126 0.196974099453912 0.194087777090684 0.208019252876792 0.203379251105138 0.198056010486753 1 1|0 +|/ 4519267 4520043 4519665.2 4515603 4520281 + gene protein_coding_gene FALSE TRUE AT1G13220.1|AT1G13220.2 nuclear matrix constituent protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68790.1); similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] (GB:BAA20407.1); contains InterPro domain t-snare; (InterPro:IPR010989)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68790.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67230.1); similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] (GB:BAA20407.1); contains InterPro domain t-snare; (InterPro:IPR010989) 0.0919785159030739 1.04178829473674 0.320104119770013 1 -0.0880795556029872 9.23541425404843 0.0919785159030739 0.0578174445085768
AT3G20080_at 3.88429829526071 3.67870447581072 3.68003473595817 3.85099816282219 3.58480100929222 3.28838323519366 3.2146794458368 3.57301671723402 3.97943159453588 3.17811276336536 3.43476738174641 3.44124370291234 3.03248004658147 3.68711156576988 2.92067799744943 3.21947771298771 3.23588426505050 3.50748699675313 3.42891556695989 0.217554288668344 0.220664467957756 0.21954086651408 0.218178639128593 0.216241274317963 0.222305882658814 0.213745433863624 0.219351904104109 0.221147220406715 0.217238275897655 0.217559354698634 0.213745433863624 0.225770575266833 0.215643007556541 0.213745433863624 0.217727646530837 0.230508734000958 0.215967327267528 0.213745433863624 3 3 + 7009915 7010445 7010206 7007875 7013700 + gene protein_coding_gene FALSE TRUE AT3G20080.1|AT3G20080.2|AT3G20080.3 CYP705A15 (cytochrome P450, family 705, subfamily A, polypeptide 15); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A23 (cytochrome P450, family 705, subfamily A, polypeptide 23), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20140.1); similar to CYP705A4 (cytochrome P450, family 705, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15380.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|similar to CYP705A4 (cytochrome P450, family 705, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15380.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.102774607008176 -1.04168590843485 0.320149508309314 1 -0.0881770806158426 7.01372010148109 -0.102774607008176 0.092833207582529
AT2G17880_at 3.75307370896545 3.82595173213098 2.09315658322247 1.75808591588451 4.24938795827151 3.69605674635984 1.74568551913104 2.32261502952065 3.0352228038185 2.02795265005480 2.80039521665141 3.41681070774461 2.84199480737425 3.20168314305697 3.22408301728586 3.49911729251928 1.99617091620809 2.88532939376371 3.23566247383679 0.211310835905536 0.219592286362883 0.216215157907815 0.212700149352652 0.216453832487373 0.231630322172362 0.214102995674975 0.208805467382948 0.213444455059362 0.211042068072086 0.208444732989638 0.212771072973097 0.210190489988635 0.213411504697231 0.217465938670299 0.211167697380717 0.219949014121771 0.212468105475171 0.209899198497189 2 2 - 7774304 7774559 7774431.091 7774044 7775013 - gene protein_coding_gene FALSE TRUE AT2G17880.1 DNAJ heat shock protein, putative similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.127129528043191 1.04163701335157 0.320171185525873 1 -0.0882236514466764 5.80524033471692 0.127129528043191 0.150528378905357
AT1G80090_at 1.60881839443647 1.6788228755386 2.04984238240420 2.33112294869315 1.80751490626876 1.24734095625252 2.08382690939154 1.55702914102169 1.26690084259170 1.59110902475861 1.64610852976697 1.76747232236578 2.00969629330993 1.39569427425604 1.73273211277252 1.72475643950067 1.87152116134997 1.81998189104792 2.02107049868591 0.213568928401610 0.219569842920572 0.219072099687166 0.212828858711921 0.212407189188765 0.216275427670194 0.212210763416913 0.214942471597986 0.213607509967165 0.214207128993532 0.214578643179148 0.214377842485407 0.214376061683738 0.21961653168476 0.214653735418596 0.212210763416913 0.214671691757718 0.214309672949005 0.225003922142048 1 1|0 +|/ 30135994 30136688 30136377.5 30134997 30136833 + gene protein_coding_gene FALSE TRUE AT1G80090.1 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G15330.1); similar to SNF4b [Medicago truncatula] (GB:AAO61675.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.123233112170865 1.04147688150510 0.320242186283081 1 -0.0883761590364718 3.48171756428002 0.123233112170865 0.142213678587326
AT2G40550_at 3.29230241847223 3.10346193601089 3.09023268517159 3.53578379817101 1.88368539240837 1.93800700748309 3.05342611159731 3.55269914428302 1.98025819784596 2.19794502000570 2.96748804191134 3.4933492077528 2.18627486236221 3.01097799321897 4.14188936663762 2.44852896475085 2.14471552365565 2.98055247292510 1.98910892748724 0.218960806292616 0.218477282212594 0.220210929028377 0.214129499684319 0.225117653735477 0.225959593802371 0.214129499684319 0.221116878975639 0.219480974245938 0.218022806511611 0.214129499684319 0.215545488339558 0.221744615758541 0.214129499684319 0.224628611093476 0.214129499684319 0.221714180794267 0.217783694742591 0.215936689529687 2 2 + 16944184 16945037 16944599.727 16941912 16945279 + gene protein_coding_gene FALSE TRUE AT2G40550.1 similar to Os01g0166800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042118.1); similar to P0028E10.3 [Oryza sativa (japonica cultivar-group)] (GB:BAB39900.1); contains domain gb def: Hypothetical protein At2g40550 (PTHR13489:SF2); contains domain FAMILY NOT NAMED (PTHR13489) 0.113703078628253 1.04139844633567 0.320276967892967 1 -0.0884508528402258 5.41994619633208 0.113703078628253 0.120692560884975
AT4G12020_at 3.59719501177602 4.23341480862393 4.20022731624807 4.05108861910257 4.20097381618581 3.98423113530851 4.52788562527629 3.56968406418844 4.11362697080307 3.47762323037218 2.90604519863186 2.66464677309721 2.71713623529128 2.77743704612381 3.8847456629159 3.77090225286401 3.93227924265708 3.7451745587567 3.61343014999599 0.313570404736803 0.302884040808476 0.305022615491252 0.289909791833254 0.297492886209603 0.289909791833254 0.300848194816059 0.289909791833254 0.29903245625038 0.291420679432264 0.30457752857807 0.302704861306511 0.305541075543802 0.307985677724559 0.332137809829291 0.289909791833254 0.302812813384446 0.289909791833254 0.307497490908292 4 4|0 +|/ 7208146 7208518 7208276 7201650 7208760 + gene protein_coding_gene FALSE TRUE AT4G12020.1 WRKY19 (WRKY DNA-binding protein 19); transcription factor member of MEKK subfamily Identical to Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19) (WRKY19) [Arabidopsis Thaliana] (GB:Q9SZ67); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G19500.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) -0.154006117426557 -1.04085758867635 0.320516884808603 1 -0.088965788335671 7.56293221043003 -0.154006117426557 0.204185847905099
AT4G22130_at 2.9741263284096 2.356917703314 1.72354259464330 2.16919353549176 1.84830426037641 2.33361404867563 2.47356183454304 2.83876939827062 2.41762339811949 2.67590898738886 3.9927970376351 4.25842604649547 3.42709183628453 3.42076750345153 4.40911485578028 3.33060100572588 3.02979630536684 3.76646118851376 3.27882594509721 0.20993572323775 0.211402763601048 0.224692334378304 0.221921643341402 0.216829249435019 0.214480387091334 0.213292931962683 0.215418136849444 0.217902810207371 0.214918365205994 0.213308027926998 0.223398226533948 0.211738083581741 0.214434431012961 0.218785475265058 0.211544836252007 0.21329993105565 0.212562637021771 0.211328752141059 4 4|0 +|/ 11726493 11727189 11726818.222 11723525 11727685 + gene protein_coding_gene FALSE TRUE AT4G22130.1 kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G53730.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G14350.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to leucine-rich repeat transmembrane protein kinase 2 [Zea mays] (GB:AAC27895.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.135707827933643 1.04059481302601 0.320633496846320 1 -0.089215892018309 5.58733775426981 0.135707827933643 0.168535466537707
AT3G26730_at 8.46067006206596 8.4215386132302 7.92631132232436 7.71765637298935 8.47632537799407 7.87800622379507 8.15773087153891 7.90960401928892 7.8094822151708 7.99072259664384 8.31088256321153 8.32076695161023 8.07619023428988 7.76792073617861 7.60105862535516 8.42052307836414 7.7773941772491 7.94225723285592 8.24248473842616 0.168919498336336 0.168814125666423 0.172940084286159 0.173451875786937 0.173839391945676 0.182986372414658 0.173894822806175 0.165781250078482 0.175911245163453 0.161758061806997 0.171192845426571 0.166210896024976 0.170915840310954 0.180894835221263 0.174558510085113 0.17369026907817 0.181331541444618 0.171979995891101 0.166341745120861 3 3 + 9827497 9828482 9827992.727 9824922 9828675 + gene protein_coding_gene FALSE TRUE AT3G26730.1 zinc finger (C3HC4-type RING finger) family protein similar to MGC130952 protein [Xenopus laevis] (GB:AAI08525.1); similar to Os02g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046958.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.112458358723116 -1.04051581549073 0.320668559800319 1 -0.0892910700799067 16.1391573828881 -0.112458358723116 0.117959434096591
AT2G35910_at 2.14318842831348 2.58157772338384 2.01427293901467 1.78896808045036 1.84439189214851 2.21748760153218 1.76523180872756 1.97679908563922 2.48745932424070 2.04518592055123 2.03064511024479 1.87634514496762 2.08645795517797 1.59922385856518 2.12325283964755 2.06056439275425 2.00865682351591 2.28860703884068 1.7062507232787 0.222590303158588 0.223399855403148 0.224337766115468 0.225778986574321 0.232429535600903 0.217762234372025 0.225091880094755 0.220407419530556 0.229675750425736 0.222465940357918 0.220632134195786 0.21769546502905 0.218201071180096 0.223338414719060 0.22039856072662 0.216356138969487 0.224128967942002 0.225954289000569 0.227569804840658 2 2 - 15080306 15080792 15080521.455 15080011 15081160 - gene protein_coding_gene FALSE TRUE AT2G35910.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2I (ATL2I) [Arabidopsis Thaliana] (GB:Q8RX29;GB:Q9SJ59); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06490.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE84207.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.110415988561114 -1.04027317402284 0.320776273800243 1 -0.0895219512895534 4.08591526231179 -0.110415988561114 0.113070873388236
AT4G34860_at 3.3810291741967 3.95831620762337 4.41503540814003 4.25929327512754 3.60540084429098 3.93103207497835 3.47355003816728 3.61322101646543 2.94596914024369 2.48009569655603 2.10461046195597 1.91482079785491 2.71785110410033 2.25745079383312 2.01599917489045 2.68951413823103 3.35131378235722 2.35924765888693 2.51104621095103 0.223517603227193 0.226277721770612 0.217709143269277 0.225093881238546 0.217709143269277 0.234647309768376 0.220771409963621 0.226329298470028 0.219689194112604 0.218733675231237 0.222209891690614 0.218781175693362 0.219595306018508 0.220720732897524 0.221899776159349 0.221998735584075 0.225682047818753 0.217709143269277 0.224083823382649 4 4|0 -|/ 16609961 16610635 16610335.4 16609751 16612912 - gene protein_coding_gene FALSE TRUE AT4G34860.1|AT4G34860.2 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative|beta-fructofuranosidase similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) 0.113404298975598 1.04026818149334 0.32077849037981 1 -0.0895267013879719 6.36563709067237 0.113404298975598 0.120277300399118
AT1G09155_at 2.17840380662262 1.88163817237267 2.15733220339620 2.22829278518023 1.72242544346444 1.75454798788883 1.58040331114421 1.38410701358673 2.01398615986213 1.79263165572596 1.91341105605356 1.59910330790940 2.10666665839459 1.97204035798106 2.12096316772979 1.64455889365315 1.92606139606973 1.30381358905720 1.73278154136823 0.194890870730508 0.195513718596621 0.195544435175459 0.199010684753373 0.195983135819957 0.192677102615693 0.196681658353908 0.195544602722197 0.197626983487718 0.196789348535088 0.197557167292547 0.200650604582023 0.194317561700259 0.191130956406134 0.196562079606807 0.199474063374534 0.197628449496441 0.205622717753371 0.194317285485501 1 1|0 -|/ 2949923 2950449 2950166.2 2949678 2950991 - gene protein_coding_gene FALSE TRUE AT1G09155.1 ATPP2-B15 (Phloem protein 2-B15) similar to ATPP2-B13 (Phloem protein 2-B13) [Arabidopsis thaliana] (TAIR:AT1G56240.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1); contains domain no description (G3D.1.20.58.140); contains domain F-box domain (SSF81383) 0.0931861900440789 1.04012108997093 0.320843801096022 1 -0.089666642094084 3.69579071829441 0.0931861900440789 0.0630330892670983
AT1G76430_at 1.10129345141920 1.29153614797248 1.70605200612570 1.35083562391850 0.739653081299821 1.00228012471467 1.23704515014478 1.54360381044432 1.16170834779744 1.03236691506360 1.06045689867876 0.730723638038609 1.26640895965887 0.696488715747808 1.05483082840856 0.954601410774732 1.07186103561107 1.43341253250783 1.25437131176523 0.202201352268358 0.197996599684113 0.205334937921557 0.199360897596044 0.197996599684113 0.203777890860818 0.200301647753798 0.198134155024898 0.206056760227274 0.202473143510714 0.208269934547249 0.205506336586798 0.201726732250117 0.202768968613694 0.202405650976510 0.197996599684113 0.197996599684113 0.197996599684113 0.201426789251579 1 1 - 28684025 28684558 28684323.727 28683829 28686889 - gene protein_coding_gene FALSE TRUE AT1G76430.1 phosphate transporter family protein Identical to Inorganic phosphate transporter 1-9 (AtPht1;9) (H(+)/Pi cotransporter) (PHT1-9) [Arabidopsis Thaliana] (GB:Q9S735); similar to phosphate transporter family protein [Arabidopsis thaliana] (TAIR:AT1G20860.1); similar to putative phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD33230.1); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.104774310047165 -1.04009498262396 0.320855394164369 1 -0.0896914785748828 2.33807752149012 -0.104774310047165 0.0987052190929205
AT4G11150_at 11.5910959182283 11.6698753969892 11.9365108808274 11.9497164884175 11.5859801287424 11.7019737174853 11.9349322902008 12.0406539805613 11.7476601793351 12.0415892803753 12.2229508200105 12.1382971907123 12.1371604574579 12.1331178530241 12.1400456229229 11.9156782019556 12.0139657858821 11.9224866789233 11.8793165201788 0.069947092395696 0.0685734320292553 0.070805652584335 0.0698340248266158 0.0685734320292553 0.0696779875332209 0.0693896836910222 0.0735720630011964 0.0848555636036673 0.0693024227326408 0.0693779019019637 0.0688307409044084 0.0685734320292553 0.0703817668776171 0.069589144921476 0.0685734320292553 0.0743134392160563 0.0749487252397359 0.0732237067910167 4 4|0 +|/ 6800316 6801664 6801183.5 6799931 6801928 + gene protein_coding_gene FALSE TRUE AT4G11150.1 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. Identical to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) (VATE) [Arabidopsis Thaliana] (GB:Q39258;GB:O82502); similar to VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3), hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT1G64200.1); similar to vacuolar ATPase subunit E-like protein [Thellun (GB:AAM19709.1); contains InterPro domain ATPase, V1/A1 complex, subunit E; (InterPro:IPR002842) 0.086423370218987 1.03984923100397 0.320964536444541 1 -0.089925242785799 23.7850847600103 0.086423370218987 0.0304754042759171
AT4G33010_at 12.8489836353355 12.9779680823755 13.3634485822188 13.412034696435 12.8402989182633 13.034625167514 13.7391869572977 13.9781701736009 13.7569894982965 14.1543716120543 13.9001747628045 13.7486579365323 14.0856785720455 13.9747184742387 13.6477551629830 14.2943837721274 14.0486686879572 14.1232952357602 13.9036595608641 0.0539709228493747 0.0567661919715241 0.0554301556536737 0.0539174911209609 0.0542050465544601 0.0539174911209609 0.0563090675446748 0.059563214518005 0.0608203639717366 0.0539174911209609 0.054069408567544 0.0540028935571289 0.0555395122369253 0.0579611651202657 0.0549015781146525 0.0539174911209609 0.0562487633686747 0.0571877207423478 0.0539950885503063 4 4|0 -|/ 15926861 15927872 15927314.889 15926673 15931335 - gene protein_coding_gene FALSE TRUE AT4G33010.1 glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative Identical to Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase 2) (Glycine cleavage system P-protein 2) [Arabidopsis Thaliana] (GB:Q94B78;GB:O82642;GB:Q8GTY1;GB:Q8VZF0); similar to glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative [Arabidopsis thaliana] (TAIR:AT2G26080.1); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:P26969); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49954); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49850); contains InterPro domain Glycine cleavage system P-protein; (InterPro:IPR003437) -0.0919495096134262 -1.03980826487314 0.32098273286169 1 -0.0899642063242172 27.2324679262773 -0.0919495096134262 0.0583974923052575
AT2G47730_at 11.4430254564857 11.5741223537149 11.1789403884872 11.2282400807625 10.7827541609221 10.8275595855927 10.9201459952235 11.4303233367176 11.3488359681428 11.0415944106718 11.4087168456498 11.4819762250755 11.1515859087568 11.4484913423283 11.1484129450928 11.1688016524848 10.8585656818748 11.2424819558227 10.9262100754673 0.0703045075239763 0.070767026076396 0.0709925616255089 0.072644854129048 0.0698167414772772 0.07361269352158 0.0708569380553212 0.0710538465906441 0.0735115986128106 0.0731788970136617 0.0698167414772772 0.0698167414772772 0.0710296060031942 0.0709115794499728 0.0725036251568621 0.0703346576069608 0.076820143214972 0.0698167414772772 0.0745170669454621 2 2 + 19565499 19566278 19565965.182 19565270 19566533 + gene protein_coding_gene FALSE TRUE AT2G47730.1 ATGSTF8 (GLUTATHIONE S-TRANSFERASE 8); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Glutathione S-transferase 6 (EC 2.5.1.18) (GST class phi) (GST6) [Arabidopsis Thaliana] (GB:Q96266;GB:O82242;GB:Q9FUT2); similar to ATGSTF2 (Arabidopsis thaliana Glutathione S-transferase (class phi) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT4G02520.1); similar to glutathione S-transferase [Vitis vinifera] (GB:ABK81651.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.102224240026300 -1.03955882725609 0.321093545171829 1 -0.090201423740023 22.3452268636031 -0.102224240026300 0.0918829499496727
AT1G79580_at 0.67898793845321 0.58458195699357 0.993957427015334 0.693375447126722 0.960666126897239 0.629329752066296 0.849351085467998 1.21553202770154 0.442884813021643 1.00764172686158 0.893665088781421 0.955027445042096 1.30146297248185 1.12992312448461 1.21990049110607 0.729971910857746 0.879100643663102 1.37282359165274 1.05797032358690 0.220289145677300 0.219341423367066 0.220187200426724 0.222051531096593 0.224580003696997 0.218490627264939 0.223337894963146 0.216118749801824 0.218129647989634 0.220236725378582 0.218209354490262 0.217280386279733 0.218683135633551 0.219742284998347 0.221629449698216 0.223621190054372 0.229346796907091 0.224987545384725 0.214711952966604 1 1 - 29945921 29946422 29946256.091 29945743 29948495 - gene protein_coding_gene FALSE TRUE AT1G79580.1|AT1G79580.2|AT1G79580.3 ANAC033; transcription factor|ANAC033 similar to ANAC070 (Arabidopsis NAC domain containing protein 70), transcription factor [Arabidopsis thaliana] (TAIR:AT4G10350.1); similar to hypothetical protein [Zea mays] (GB:CAH56056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.105643861737157 1.03873856121542 0.321458148485172 1 -0.0909811810130732 1.77392273504794 0.105643861737157 0.101371382419374
AT1G20370_at 2.89709521136143 3.3703103006925 2.75847018327319 3.15718325936721 3.4936131883642 2.98023940202996 3.57148909298574 3.33057876999811 3.0570270385911 2.87895419575332 2.77586481454259 3.16625870919424 2.96134783723872 2.56650350775857 3.1092900550037 2.67123860266032 2.74388663606471 2.77058362087512 2.76158462911685 0.175352195400155 0.179654033985461 0.181093070068117 0.170757469393500 0.175336221952678 0.169499874368176 0.181673400929178 0.175766955900164 0.183654918785907 0.171209513187573 0.173866966504345 0.175700010376734 0.177081676083150 0.183907706971165 0.180720603447372 0.176448395497164 0.171271409140611 0.172529032927603 0.173311597627083 1 1 - 7051910 7052439 7052253.545 7051567 7053631 - gene protein_coding_gene FALSE TRUE AT1G20370.1 tRNA pseudouridine synthase family protein similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G76120.1); similar to hypothetical protein FG06586.1 [Gibberella zeae PH-1] (GB:XP_386762.1); similar to Os02g0668400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047686.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) -0.124279366868655 -1.03847891870566 0.321573622343288 1 -0.0912278978224595 6.06727759804454 -0.124279366868655 0.145252055165246
AT3G55330_at 10.2445156842424 10.2262264420780 9.9107992126152 9.7091275596286 10.4999898515440 10.0807582703004 10.9951141926890 10.7534687942430 10.4504644959374 10.6470175922392 11.0821340642919 11.0734667199227 10.5860004475034 10.5952448810632 11.1157611873779 10.9218702275177 10.5131964810364 10.6211626084047 10.4395488175103 0.117821642944534 0.118373020096816 0.122962458507631 0.125569898446555 0.120127172304831 0.119601316833974 0.118165423861097 0.117760603275921 0.127705520802632 0.115848428367506 0.118196334459721 0.116610291122932 0.118058562857563 0.128174259016627 0.116112609780049 0.115848428367506 0.123885913965788 0.121154853070077 0.119206651447960 3 3|0 -|/ 20525021 20525943 20525525.778 20524802 20526328 - gene protein_coding_gene FALSE TRUE AT3G55330.1 photosystem II reaction center PsbP family protein Identical to Thylakoid lumenal 25.6 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:P82538); similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT2G39470.1); similar to PsbP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66119.1); similar to Os10g0461100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064776.1); similar to Os08g0347500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061609.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.101700806440133 -1.03823398747151 0.321682581839238 1 -0.0914605901896601 20.9654741071019 -0.101700806440133 0.0907759668850525
AT4G16040_at 2.16309234021543 2.57728961736774 2.18341660040404 2.00052302549517 1.76512378374478 2.06020407892243 1.92354911377918 2.35606892594911 2.09563128959824 1.94928134458544 2.22036040540074 2.13174046443509 2.65750140144139 1.62483311403436 1.89619531395583 1.76820047402715 1.93523218244359 1.79110614415766 1.88433164582616 0.24337723074867 0.236804770680463 0.240161312110202 0.243979717569411 0.250577422475925 0.236563872942691 0.244540333948951 0.236563872942691 0.239794224222240 0.238264795361583 0.242793698974741 0.240089542852425 0.247164898425018 0.239841500178055 0.239246598771878 0.241912215895563 0.250303547048444 0.240990033496253 0.243546354342914 4 4 - 9087194 9087435 9087311.455 9087194 9087466 - gene protein_coding_gene FALSE TRUE AT4G16040.1 unknown protein -0.112975849851281 -1.03821725126727 0.321690028070025 1 -0.0914764884958058 4.11843890947986 -0.112975849851281 0.119790234907899
AT4G18030_at 8.76733877596026 9.21929301687157 8.3491076530409 8.4513799904588 9.24087806769818 8.87431659504724 9.73863631181931 9.6332519098821 9.50924453693194 9.54594644521762 10.4187922973867 10.1772443638310 9.66561698385947 9.8938784542734 10.1367678851999 9.55033111189864 9.21212789818797 9.84939694206636 9.3407730830565 0.129377441491464 0.127007834507946 0.136792730119127 0.135350017951073 0.130446705873693 0.130975491868397 0.126921512241504 0.130257969723440 0.130171050005905 0.128816222728809 0.126921512241504 0.126921512241504 0.130644578058450 0.133184117222628 0.128934080246473 0.126921512241504 0.134046825301751 0.129944230578068 0.131311598662953 4 4 - 10012882 10013729 10013352.727 10012373 10015827 - gene protein_coding_gene FALSE TRUE AT4G18030.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G26850.2); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Putative methyltransferase [Medicago truncatula] (GB:ABE90775.1); similar to unknown [Malus x domestica] (GB:AAF27920.1); similar to Methyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48009.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.106505645026393 -1.03783155265915 0.321861667762445 1 -0.0918428199009456 18.6984457136756 -0.106505645026393 0.103860981069234
AT1G54720_at -0.402036938707889 -0.151659774248714 -0.673462179538107 0.232228908054652 -0.0165179222572755 -0.420477541332708 -0.0530275509654701 -0.21997781219529 0.397411155286904 0.115120745384462 -0.440495685779384 -0.2205624838922 0.243071283516863 -0.0732237027140957 0.591386519193422 -0.229939434015036 -0.244528648983764 0.0787393917559475 0.182410949454769 0.241962450342346 0.240665609441319 0.240665609441319 0.251308802315281 0.244334616523164 0.243615150667006 0.240665609441319 0.243771364131950 0.250064693459095 0.246246523696544 0.252308862070300 0.240665609441319 0.240665609441319 0.240665609441319 0.255162455706268 0.240665609441319 0.252597240606158 0.261771877971313 0.248150884896418 1 1|0 +|/ 20426514 20427322 20427076.2 20426498 20427421 + gene protein_coding_gene FALSE TRUE AT1G54720.1 early-responsive to dehydration protein-related / ERD protein-related similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2) -0.140736688281255 -1.03780322609708 0.321874276053751 1 -0.0918697197702492 -0.115764590601885 -0.140736688281255 0.179345160070633
AT2G05260_at 5.52877250866259 5.51025761737266 5.07683049376154 5.41148919400648 4.47366385388395 5.19360987363546 4.07033467012272 4.54062687958597 4.21005616617991 4.38231401611388 4.16414406738715 4.33918068485084 4.46068240247842 4.32851792032955 4.2498844903442 4.38540007714211 4.19267170672073 4.55353478202944 4.00341965053424 0.205463519086890 0.206158652101639 0.210659871225284 0.216983708895051 0.210168560914935 0.213192546999612 0.211274276506037 0.214141944790851 0.224008681332079 0.207638672814642 0.205151130819242 0.207471169662215 0.209663131724761 0.212692021566998 0.218184823101450 0.203724647359360 0.204950438790180 0.208588682455337 0.217162884076757 2 2 + 1919308 1919814 1919535.091 1918286 1920039 + gene protein_coding_gene FALSE TRUE AT2G05260.1|AT2G05260.2 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G10955.1); similar to Os02g0286200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046574.1); similar to lipase class 3-like [Oryza sativa (japonica cultivar-group)] (GB:BAB84413.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921)|similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G10955.1); similar to Os02g0286200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046574.1); similar to lipase class 3-like [Oryza sativa (japonica cultivar-group)] (GB:BAB84413.1); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) 0.131027920176749 1.03768207266411 0.321928206195192 1 -0.0919847645263713 9.2421224500554 0.131027920176749 0.159720762400094
AT2G20580_at 9.16468589846788 9.35248058628715 9.4821964957947 9.50949220853284 9.47541857896766 9.39224050573245 9.34091137073207 9.20837036665377 9.40015352843615 9.3720515059136 9.25848520364132 9.18482957535413 9.29901992217805 9.33300294915534 9.24197232630552 9.35645851326677 8.91100817185789 9.25708563081506 8.98375760481658 0.113445069546540 0.105513642401923 0.111856518551670 0.107711703759507 0.104225943602384 0.109890780282767 0.108137269541940 0.104225943602384 0.106981972799095 0.104433549393214 0.107926575114451 0.105631964979662 0.108553954588116 0.107480563328578 0.106710977849939 0.104641025283674 0.113891382345726 0.115007749923355 0.110361529981733 2 2|0 +|/ 8870894 8871532 8871266.5 8866091 8871946 + gene protein_coding_gene FALSE TRUE AT2G20580.1 AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding encoding the RPN subunits of the 26S proteasome similar to AtRPN1b/RPN1B (26S proteasome regulatory subunit S2 1B), binding [Arabidopsis thaliana] (TAIR:AT4G28470.1); similar to putative 26S proteasome regulatory subunit S2 [Oryza sativa (japonica cultivar-group)] (GB:BAD54002.1); similar to Proteasome/cyclosome, regulatory subunit [Medicago truncatula] (GB:ABE89010.1); similar to 26S proteasome regulatory complex, subunit RPN2/PSMD1 (ISS) [Ostreococcus tauri] (GB:CAL55270.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) 0.0882350659523423 1.03754844188777 0.32198769830458 1 -0.0921116449554733 18.6068346678763 0.0882350659523423 0.0425649784785771
AT4G11210_at 0.90186277430222 1.05873840253089 1.31813715876631 1.34713530940446 0.928797758878825 1.30757322939808 1.58653208511297 1.13195056420050 0.604213232477514 1.00903355807831 0.972747914743794 1.04159025878931 0.889491139949844 0.530424537976452 1.08985787901202 0.965818108893633 1.15517184830675 0.613677233180817 0.631974871106933 0.197372359472047 0.198858128371905 0.209179241310934 0.196619299813813 0.198546933627192 0.199908441996543 0.196619299813813 0.200752240531223 0.206173715487159 0.204821490726011 0.201366460556842 0.200533321990210 0.202663634042219 0.208938518598350 0.201799091374452 0.196619299813813 0.209241244789354 0.198805450462606 0.203019533072487 4 4 + 6832698 6833189 6832901.273 6832687 6833241 + gene protein_coding_gene FALSE TRUE AT4G11210.1 disease resistance-responsive family protein / dirigent family protein similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT4G11190.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25363.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.107290026063799 1.03717557359167 0.32215374174148 1 -0.092465608216549 2.02546820315470 0.107290026063799 0.106053860928972
AT2G14460_at 3.56941982314801 4.36489672040871 3.21346234412456 3.32708077332643 2.89148520398794 3.50103818629452 3.47638001089689 3.85383869200967 3.28143079716032 3.49025595846129 3.8075912025158 4.35814862676996 3.60370751050290 3.12671539642612 4.41067121683006 3.46424565717313 3.80532792063355 3.36343118063640 3.57224322457635 0.182254156984575 0.180992865343736 0.181579949264967 0.176509488573031 0.178512417782898 0.183736365080302 0.180997195282964 0.181351822072527 0.183522309061627 0.184070369239359 0.183384416492998 0.180782645742919 0.182847222282507 0.178535305005804 0.178886637114163 0.18263602817625 0.182572056691226 0.182429145561995 0.182303676251710 2 2 - 6161666 6161763 6161719.727 6161575 6162086 - gene protein_coding_gene FALSE TRUE AT2G14460.1 unknown protein -0.144182002906226 -1.03694191735140 0.322257824640409 1 -0.0926873654473405 7.11992846877558 -0.144182002906226 0.186363284624627
AT2G35840_at 9.63654494348825 9.58483618949684 9.95212909234077 9.77244829433231 9.92600042991857 9.76462423483218 10.6865496026451 10.4152194158004 10.0654845614337 10.4738711381177 10.1487390929505 10.2217391959544 10.2415964312997 10.1790220200363 10.0156851517968 10.4247553685572 10.4707297154419 10.3217793806521 10.0965606253550 0.0980843691756924 0.0965210153857763 0.0993091579983206 0.095503677334365 0.0985732997047144 0.0974518279399353 0.0996889654119586 0.097810990251287 0.103776367510912 0.0997779987052127 0.0994837878286755 0.095503677334365 0.0984840740208557 0.100912339964502 0.098669480440867 0.095503677334365 0.0957261537311281 0.0980114534872723 0.0959464323483845 2 2|0 +|/ 15062127 15062655 15062427.111 15060702 15063084 + gene protein_coding_gene FALSE TRUE AT2G35840.1|AT2G35840.2 sucrose-phosphatase 1 (SPP1) similar to sucrose-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G51420.1); similar to sucrose phosphate phosphatase [Malus x domestica] (GB:AAS79792.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Sucrose phosphatase, plant and cyanobacteria; (InterPro:IPR012847); contains InterPro domain Sucrose-phosphate phosphatase; (InterPro:IPR006378); contains InterPro domain Sucrose-6-phosphate phosphohydrolase C-terminal; (InterPro:IPR013679); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380) -0.0929766693588727 -1.03639603381372 0.322501087835599 1 -0.0932052927717825 20.1997829768009 -0.0929766693588727 0.0634951053524742
AT4G00150_at 6.42671712665856 6.57287780070882 6.37030789415683 6.41711403689413 6.78088904125841 6.69185209895578 7.48977986947119 7.28534418452754 5.51035940890015 6.08025279371155 5.99742817950244 6.48002802660128 6.46835263117066 6.58216453593472 6.41169747606987 6.74352777587018 6.61877628531004 6.25204377831759 6.07231215878189 0.195583467873597 0.198281283824715 0.202289371326478 0.194671236931541 0.193729848984682 0.193343340780274 0.192050994236864 0.20144224923368 0.223534323119543 0.194517319160226 0.196269250380389 0.19057886059252 0.194635524263296 0.195947155805389 0.196928050761882 0.192059207969188 0.211832183563767 0.201669450606339 0.202201672530703 4 4 - 57431 57978 57748.455 57199 59286 - gene protein_coding_gene FALSE TRUE AT4G00150.1 scarecrow-like transcription factor 6 (SCL6) similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G45160.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G60630.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85338.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.0889859523869982 1.0363476623283 0.322522650317785 1 -0.0932511764158483 12.9203071515264 0.0889859523869982 0.0468448727103664
AT2G13650_at 7.84387653607132 8.09391621077568 8.32663513044222 8.26197092934267 8.21696819047502 7.60371934436132 7.54588875072462 8.07600877851932 7.46606319461323 6.9067130170079 7.14111469036281 7.4106349713299 7.0225111478978 7.38065461015222 6.73246886191108 7.01660279616815 6.98972341469039 7.23587397590956 6.86341141643315 0.192026437895504 0.193048585336351 0.196985436914723 0.190536974318200 0.192479684593907 0.212107357171985 0.210604807207873 0.191821853370511 0.201041874414347 0.187567197106655 0.191182085564458 0.187567197106655 0.190046065694593 0.197863933050370 0.201600015383888 0.189727144716125 0.202181255003502 0.201918748249219 0.188122912405813 2 0|2 /|- 5694854 5695377 5695147.333 5694476 5697790 - gene protein_coding_gene FALSE TRUE AT2G13650.1|AT2G13650.2 GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1); nucleotide-sugar transporter|GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-mannose transporter Identical to GDP-mannose transporter (GONST1) [Arabidopsis Thaliana] (GB:Q941R4;GB:Q9SIT2); similar to nucleotide-sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT1G07290.1); similar to GONST2 Gol (GB:ABF99644.1); similar to Os08g0107400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060797.1); similar to putative lipophosphoglycan biosynthetic [Oryza sativa] (GB:AAK82435.1); contains domain SOLUTE CARRIER FAMILY 35 MEMBER D (PTHR11132:SF13); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132) 0.124934839416939 1.03629427438081 0.322546450227646 1 -0.0933018165111685 15.0935866177911 0.124934839416939 0.147229014165182
AT4G24580_at 1.67056770434023 1.40232453295262 2.27309351314508 1.60316577771001 1.12601180132922 2.02266646031949 1.36996782260927 1.61117118236651 1.87047527105824 1.65398617714953 2.12750942319261 1.74979424954998 1.94752839405965 1.8428596767194 1.81973958727185 1.60104113538595 1.86336541765876 1.47712521724731 1.69706801572113 0.198275650816578 0.194893918021092 0.205504245107283 0.207924429578789 0.201212400266451 0.198032305110847 0.203600137895157 0.200069481124946 0.200246139815133 0.212255077198960 0.19970228439147 0.194893918021092 0.207201302997239 0.201368121920342 0.201172595977492 0.201785592702055 0.207494101678732 0.199148940675140 0.196481849309202 4 4 - 12687891 12688710 12688221.091 12687889 12694258 - gene protein_coding_gene FALSE TRUE AT4G24580.1 pleckstrin homology (PH) domain-containing protein-related / RhoGAP domain-containing protein similar to pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12150.1); similar to pleckstrin homology (PH) domain-containing protein / RhoGAP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19390.2); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73663.1); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD30338.1); similar to pleckstriny domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96033.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain RhoGAP; (InterPro:IPR000198) 0.152918571942425 1.03591149551771 0.322717128238678 1 -0.0936648323300171 3.40693620381921 0.152918571942425 0.203508621025714
AT1G64320_at 1.590850016072 1.28325569946434 1.46724649637955 1.80759510525089 1.26341604786712 1.74815574310288 1.31775673717813 1.58622697261507 1.86322994793772 1.50537320611382 1.83460692915045 1.43192548118442 1.56258527244804 1.89489410263306 1.75634979933075 1.29395821214478 1.75669372112861 1.86606425223951 1.34844474887978 0.168446928098099 0.168535411228223 0.170385564522984 0.171946817604958 0.167640963183367 0.171717677418184 0.167640963183367 0.167640963183367 0.171210753740076 0.170074967294229 0.175972292781573 0.17038544679276 0.175878220435147 0.175606733808786 0.171864909844067 0.178288956407123 0.171007857159575 0.171641324568659 0.169215315273269 1 1 + 23873668 23874152 23873905.455 23872699 23874211 + gene protein_coding_gene FALSE TRUE AT1G64320.1 myosin heavy chain-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT5G41780.1); similar to putative myosin heavy chain-like protein [Trifolium pratense] (GB:BAE71306.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.114683206061536 1.03560898158771 0.322852064357841 1 -0.0939516508305805 3.13155486337103 0.114683206061536 0.124491185307124
AT2G47380_at 10.7573934628297 10.9071151372603 10.9886540022398 11.0279186427080 10.7707983952843 10.6173057490002 10.6667659593335 10.8830234360304 10.6229555847531 10.8479481131476 11.0102607340631 11.0108874251992 11.0597002862089 10.8910746600770 10.7838042248054 10.8107452770847 10.8480425458432 10.707071754777 10.8009126214959 0.0770260463671045 0.0751763360227638 0.0752056905865416 0.07662890665836 0.0764582125019995 0.0754792989515067 0.0785917843675961 0.0751570825484624 0.0859514149021217 0.075957975183601 0.0793635527515102 0.0744529441770589 0.0758562403681359 0.0806188805462486 0.078513684798196 0.0746818621686059 0.0791968192306701 0.081024313411841 0.0740947926790751 2 2 + 19448769 19448926 19448837.727 19448025 19449123 + gene protein_coding_gene FALSE TRUE AT2G47380.1 cytochrome c oxidase subunit Vc family protein / COX5C family protein Identical to Probable cytochrome c oxidase polypeptide Vc-1 (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c-1) [Arabidopsis Thaliana] (GB:O22912); similar to cytochrome-c oxidase [Arabidopsis thaliana] (TAIR:AT5G61310.3); similar to Cytochrome c oxidase polypeptide Vc (Cytochrome c oxidase subunit 5c) (GB:Q42841); contains InterPro domain Cytochrome c oxidase subunit Vc; (InterPro:IPR008432) 0.0902604777431883 1.03507975741933 0.323088225481327 1 -0.094453254618402 21.6511070830722 0.0902604777431883 0.0531380909232036
AT2G26260_at 2.59602398721751 2.83212966238320 2.61260783152585 2.75463743808379 2.65634031609907 2.26569892683301 3.58212322505084 3.09696852203722 2.78644386826736 2.47662120466481 2.85609295207082 3.1020721239445 2.47796055498265 2.82489657798842 3.30017429628627 2.51820693148338 2.58930661691705 3.45550624172854 2.71599408540194 0.213154111874043 0.211241993429261 0.21382012168642 0.217005665094455 0.210035836973940 0.20818848602336 0.214495907129733 0.20818848602336 0.209625112797890 0.208312812252886 0.209775123293508 0.20818848602336 0.210894604619052 0.216618268370699 0.212458375438559 0.20818848602336 0.210646808874643 0.213511418111524 0.209594392924179 2 2 + 11186203 11188623 11187945.091 11185178 11190054 + gene protein_coding_gene FALSE TRUE AT2G26260.1|AT2G26260.2 AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating)|AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2); 3-beta-hydroxy-delta5-steroid dehydrogenase Encodes an enzyme with 3β-hydroxysteroid dehydrogenase/C4-decarboxylase activity in vitro. The activity of the enzyme was determined using microsomal extracts of yeast overexpressing the Arabidopsis gene. Cytosolic fractions failed to be associated to the activity, leading to the speculation that the enzyme is membrane-bound. similar to AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1), 3-beta-hydroxy-delta5-steroid dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G47290.2); similar to Os03g0405000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050327.1); similar to putative 3-beta hydroxysteroid dehydrogenase/isomerase [Oryza sativa (japonica cultivar-group)] (GB:AAP50919.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225); contains InterPro domain Reticulon; (InterPro:IPR003388) -0.111824785111466 -1.03500825975197 0.323120140480363 1 -0.0945210049434742 5.5746729501721 -0.111824785111466 0.117867133864619
AT3G07880_at 9.42101740268046 9.54477935156804 9.4099976140943 9.42795928482798 9.82333503837936 9.50518050779045 9.51727863957627 9.47071613963896 9.06465434773007 9.04340330558009 9.275758488591 9.24293499706092 9.39260014975486 9.19406115439238 9.3968936068038 9.49761840046067 8.65612617600346 9.15417264571726 9.1791464316114 0.121505420097107 0.117280017214886 0.120426464288075 0.122829583428047 0.117117442886463 0.126916037742654 0.117117442886463 0.119938463807105 0.139945405371068 0.118922855267709 0.122321360907029 0.117357751168063 0.118485798078841 0.121875909705712 0.117117442886463 0.117117442886463 0.136905840195262 0.124633239034791 0.122279418040496 3 3 + 2514317 2515521 2515078.455 2513977 2515829 + gene protein_coding_gene FALSE TRUE AT3G07880.1 Rho GDP-dissociation inhibitor family protein Identical to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1) (GDI1) [Arabidopsis Thaliana] (GB:Q9SFC6); similar to Rho GDP-dissociation inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62450.1); similar to Rho GDP dissociation inhibitor 2 [Medicago truncatula] (GB:CAF02296.1); contains InterPro domain RHO protein GDP dissociation inhibitor; (InterPro:IPR000406) 0.0918531176406423 1.03496808285902 0.323138075599251 1 -0.0945590744248551 18.6760356959804 0.0918531176406423 0.0597051163671776
AT3G50220_at 1.02616452345366 1.22711177426611 1.15168001924569 1.87556771574261 1.04387635821466 1.47879335091990 0.901225357008866 1.12423355729973 1.33151773242859 1.03567438562968 1.29620435266740 1.20031255555801 0.506800902296636 1.13345439346624 1.00196047249550 0.863229787256223 1.90132497189909 0.932970885416446 1.12895393607373 0.204775947086199 0.204428079257117 0.205071282543126 0.217663439516505 0.211046276864865 0.204428079257117 0.208382631918639 0.204428079257117 0.211605356165058 0.209922223483003 0.205927585032806 0.207803784856112 0.207264846137955 0.205125077801110 0.205994487221815 0.207621341104678 0.220928159828248 0.207922672016013 0.209160557814880 3 3 - 18628727 18629229 18629009.273 18628406 18629711 - gene protein_coding_gene FALSE TRUE AT3G50220.1 nucleic acid binding / pancreatic ribonuclease similar to nucleic acid binding / pancreatic ribonuclease [Arabidopsis thaliana] (TAIR:AT5G67210.1); similar to Uncharacterized plant-specific domain 01627 [Medicago truncatula] (GB:ABE82263.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514); contains InterPro domain Pancreatic ribonuclease; (InterPro:IPR001427) 0.128472915055782 1.03494547064159 0.323148170105752 1 -0.0945805000320925 2.36353873610688 0.128472915055782 0.155101650060134
AT4G15930_at 8.87018892991446 9.08656166664676 9.08068757289846 9.03960429155774 9.3904038990282 9.16658798030402 9.45308719035768 9.53783884546864 9.2639577126981 9.35405984538152 9.56809010696716 9.5093975000884 9.55969974736486 9.6341437945075 9.46892774148279 9.79747558193957 9.5250258883517 9.52340850847023 9.35319661993372 0.107704797929247 0.104040305301114 0.112935719937479 0.113685784539030 0.109517733573981 0.110576113326240 0.109596100865763 0.109106255324536 0.11328707181429 0.107448120577179 0.110205905836133 0.107907458068855 0.104753908435187 0.109182507004202 0.114381135828727 0.107891111852454 0.120832013630379 0.111755939722635 0.107619853259149 4 4|0 +|/ 9036439 9037809 9037027.778 9036236 9038077 + gene protein_coding_gene FALSE TRUE AT4G15930.1 dynein light chain, putative similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT5G20110.1); similar to Dynein Light Chain family member (dlc-1) [Caenorhabditis elegans] (GB:NP_498422.1); similar to Os01g0256400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042625.1); contains InterPro domain Dynein light chain, type 1; (InterPro:IPR001372) 0.0909674135794849 1.03461241468608 0.323296879565005 1 -0.0948960346330847 18.6516246310142 0.0909674135794849 0.0562843914734765
AT1G17430_at 5.88782039702131 6.73192884621463 4.37686439247212 4.20826426143096 4.34057759154423 4.38072746290751 3.21429519460999 3.18560906500853 4.61729929942031 2.79475816886047 4.7439539364691 4.29115004988562 2.95574741430926 3.89328902235281 4.39774778153398 3.07608073030403 2.87334798289403 4.28904340305564 3.50201946603535 0.257527599992472 0.249298712724787 0.265308009147482 0.25490308876127 0.251878480766560 0.249115397534885 0.24557703711254 0.260491546454824 0.271462964643158 0.24557703711254 0.256584681324858 0.254845655933422 0.249758393053365 0.248654551479121 0.248201955965727 0.246034717104412 0.251490734087745 0.255363087471617 0.24557703711254 1 1|0 +|/ 5982796 5983842 5983142.222 5982260 5984006 + gene protein_coding_gene FALSE TRUE AT1G17430.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G72620.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE81749.1); similar to Os03g0178500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049153.1); similar to Os07g0622700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060317.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.125642776648197 -1.03452426247643 0.323336248047072 1 -0.0949795356334424 8.26729624383746 -0.125642776648197 0.149206842417295
AT1G05350_at 5.65935884484821 5.83398296617588 5.63076199269185 5.41116954989311 5.11084967274513 4.82149668430126 5.02052833266225 4.63352514050946 5.07471246242396 5.20137780842529 5.14852219306792 5.89703372016742 4.66419875766239 4.68033902842227 5.31928546825099 5.14219183730645 4.71535901613254 5.02335699000133 5.43621780366737 0.240456882277396 0.231443168079511 0.237417023215076 0.238039671155806 0.234728143923552 0.238246021975862 0.227779895164334 0.234695188909958 0.238763884609261 0.233490884329517 0.227185883976497 0.229012542640968 0.238755278661038 0.233140486871166 0.234628091279884 0.227185883976497 0.236784917279969 0.234881232481414 0.233226882564394 1 0|1 /|- 1560893 1561970 1561327.429 1560677 1564122 - gene protein_coding_gene FALSE TRUE AT1G05350.1 thiF family protein similar to SAE2 (SUMO-ACTIVATING ENZYME 2) [Arabidopsis thaliana] (TAIR:AT2G21470.2); similar to Os02g0506500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046919.1); similar to putative Ubiquitin activating enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAD23175.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) -0.103464747301787 -1.034478615515 0.323356635230064 1 -0.0950227718508402 10.4208200985860 -0.103464747301787 0.096695762203933
AT2G38130_at 8.04959395912251 8.49866766624846 7.6330665964618 8.30447912955959 8.17800675007559 7.68482441867875 6.49826819901177 7.63508607551766 7.35308631741445 7.18848661374296 7.77160205717895 7.57895432468913 7.1312957672884 7.9254998723168 7.11030789355781 7.57147523805339 6.40894100186947 7.17399356537725 7.21347725958986 0.224650161673926 0.22420837060124 0.235359933666044 0.232187609291265 0.227931309669958 0.24656047921761 0.229380451628634 0.224291891870397 0.239145345407284 0.226083700060809 0.223353524503879 0.225953100847227 0.225336273097492 0.232426743771641 0.224653556184215 0.224898331344455 0.248288196415841 0.229943999325187 0.223353524503879 2 2|0 -|/ 15985728 15987136 15986268.9 15985590 15987793 - gene protein_coding_gene FALSE TRUE AT2G38130.1|AT2G38130.2 ATMAK3 (Arabidopsis thaliana MAK3 homologue); N-acetyltransferase Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. similar to GCN5-related N-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G13780.1); similar to unknown [Solanum tuberosum] (GB:ABA46754.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.181007783422238 1.03383138831675 0.323645807617179 1 -0.0956356515164152 15.1030951553131 0.181007783422238 0.255983221518171
AT3G20340_at 1.50568794552866 1.07784850875606 1.45214161072048 1.52668551305809 1.15322346171220 0.99090713569381 0.926660536947954 0.858038475210175 1.48662305412505 1.21355454150206 1.27230202190763 1.00538152786943 1.34925883348053 1.24558880088271 1.40472476553503 1.07604646262687 1.00520481484283 1.48280499613285 0.968430814540545 0.198345260576044 0.204767110879399 0.196415628810549 0.201982115821372 0.197618014854490 0.197374871165882 0.197295310902499 0.199692979302316 0.203143167593936 0.201309454046686 0.195944367161946 0.196740075446745 0.195944367161946 0.198212769172951 0.19995296478685 0.196399057495481 0.200488510099668 0.201721245414483 0.201345216976512 3 3 - 7093094 7093373 7093204.091 7092906 7093507 - gene protein_coding_gene FALSE TRUE AT3G20340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21920.1) 0.0979875607696412 1.03377893049759 0.32366925349403 1 -0.0956853119052127 2.41291589743624 0.0979875607696412 0.0811068927524699
AT2G13560_at 10.6871591623289 10.7589872324537 10.7994008084072 10.7610417198177 10.7260468878769 10.4921071149814 10.4440395421629 10.4659687105216 10.4817904659601 10.7368583841299 10.9391505141169 10.8403913314041 10.6475176107131 10.7216993369802 10.5256029916732 10.7321447304973 10.4229795888097 10.4284874291904 10.5420960527748 0.0988765480984574 0.0972187786525505 0.098761665563622 0.100314016100294 0.100420378315101 0.10130790004207 0.0981144783812687 0.100082149650006 0.10420510397519 0.0972187786525505 0.0985367007503866 0.0972187786525505 0.0996966945623043 0.100966216856868 0.100749666404647 0.0972187786525505 0.111264775357885 0.0996694916832279 0.0999236782844338 2 2|0 +|/ 5660358 5662153 5661273.333 5657046 5662402 + gene protein_coding_gene FALSE TRUE AT2G13560.1 malate oxidoreductase, putative similar to malate oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT4G00570.1); similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37221); similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37225); similar to NAD-dependent malic enzyme 65 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37224); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) 0.0879710974777612 1.03338962817822 0.323843290590953 1 -0.096053790259096 21.2639247269661 0.0879710974777612 0.0430344177507282
AT2G25160_at 2.10862064143163 1.92714078006006 1.88122768069781 2.08464893308338 1.68887662173096 1.87901906244107 1.28299995473612 1.49500714975125 2.21467757166539 2.29446664965847 1.81481861393453 1.63726803296002 1.83475464540607 1.78798871245218 1.71044221594848 1.54198913190629 1.78583863949574 2.04735589675863 1.90508171399122 0.227634477812949 0.240296176092609 0.231062923557772 0.241373212308409 0.233203200351676 0.232068489191025 0.234817955309179 0.233811662427313 0.243875921984851 0.240791808785427 0.23913703184153 0.227634477812949 0.230519614855362 0.238379163893152 0.242857864425856 0.227634477812949 0.234757140448268 0.227634477812949 0.231493152993274 2 2 - 10716356 10717175 10716669.364 10716143 10718319 - gene protein_coding_gene FALSE TRUE AT2G25160.1 CYP82F1 (cytochrome P450, family 82, subfamily F, polypeptide 1); oxygen binding member of CYP82F similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p [Glycine max] (GB:AAB94590.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.094008691335207 -1.03330634855597 0.323880529678855 1 -0.0961326006702441 3.74750875193125 -0.094008691335207 0.0682231319554583
AT3G16330_at 1.14328621616185 1.66389627368899 1.31052052387139 1.17941414836598 0.717395319252952 1.55884506140426 1.39783469663446 1.20246727184984 1.74374975621081 1.6503001901141 1.42902493840756 1.41195830963348 1.18159876169981 1.74782753580663 1.58973335163642 1.57483680750578 1.19122933568582 1.34011336671759 1.25533831847336 0.209031297934241 0.210364657158374 0.209706311910152 0.216010852888328 0.211773629609906 0.209145642391817 0.208537253637144 0.212397263066433 0.215083844865469 0.216392665905259 0.206764482995461 0.209469784828286 0.213740058041973 0.217345071728505 0.206764482995461 0.208231042717799 0.213775719068750 0.206764482995461 0.224043960423173 3 3 + 5535352 5535751 5535570.455 5535202 5536069 + gene protein_coding_gene FALSE TRUE AT3G16330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52140.1); similar to Avr9/Cf-9 rapidly elicited protein 146 [Nicotiana tabacum] (GB:AAG43551.1) -0.138416569369794 -1.03300952347429 0.324013283088948 1 -0.0964134548954346 2.76325063348008 -0.138416569369794 0.176008573186492
AT1G66510_at 2.35867626451494 2.49206261101332 2.45759385242406 2.58638629448829 3.08311202148565 2.1803851124927 3.34925765956113 2.84643040469961 2.85147127379894 2.54861748806033 2.59547303202337 2.74313428262843 2.36418143745297 2.75331413905335 2.76282830504617 2.40335211645519 2.56077621674692 2.67368565801377 2.71450812770748 0.171046078196535 0.168220722242876 0.163885457941558 0.163852109909156 0.163852109909156 0.173770480840589 0.165652399325931 0.165880462110696 0.170710391762338 0.169088877113739 0.165220566348852 0.176567728192027 0.173420576056407 0.163852109909156 0.171253828390347 0.170548643800772 0.169101476983107 0.168194122875388 0.174680727257014 1 1|0 +|/ 24818073 24819290 24818708.3 24816500 24820283 + gene protein_coding_gene FALSE TRUE AT1G66510.1|AT1G66510.2|AT1G66510.3 AAR2 protein family similar to CePP protein [Brassica napus var. napus] (GB:CAB89180.1); contains InterPro domain AAR2; (InterPro:IPR007946) -0.141254948076317 -1.03296992878229 0.324030994660685 1 -0.0964509142467026 5.32521741672651 -0.141254948076317 0.181676947625928
AT2G38480_at 2.70496915526266 3.23274570862818 3.31609926267457 3.93013009210512 3.79529493110524 3.46086380962693 5.41008332619366 5.14827137256757 4.2253554889271 4.26838050633922 6.17696302844545 4.80976480898908 5.09919938240281 5.16290527435331 4.86846487386493 4.78333260489847 4.95244990357624 5.16063587507297 4.61298091736915 0.292118731028528 0.297278023720991 0.297058067168981 0.287333381512938 0.290464135661645 0.301199448967009 0.29513407715435 0.304047695526273 0.3005807631388 0.290074315941828 0.291433402617483 0.294911422706439 0.294980886830451 0.291066642329903 0.287656512887299 0.287333381512938 0.293999941858037 0.307202542685463 0.287333381512938 2 2|0 -|/ 16118092 16118715 16118385.3 16117819 16118875 - gene protein_coding_gene FALSE TRUE AT2G38480.1 integral membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36330.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO60016.1); similar to Os03g0817100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051699.1); similar to Os05g0344400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055254.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.129694232310099 1.03279219662877 0.324110507014434 1 -0.0966190470300603 8.62261726051827 0.129694232310099 0.158226446988823
AT3G24070_at 6.13370921898386 5.54300887944697 6.05680139142109 5.73754936959687 6.97201693275927 6.20706032315562 6.28723261283814 6.07896671234203 6.47176904806149 6.46172649418952 5.3113989123986 5.52005255311229 6.2584792275071 6.0811398108014 5.59585201030667 6.4315605160455 6.27566577480963 5.89978511050865 6.37107168164335 0.18255393512694 0.177669155399280 0.182863289249235 0.189215475154984 0.187603055880026 0.194994990851594 0.182496627513669 0.179611997407488 0.186186709903229 0.198048584402918 0.194006502802153 0.184176630843755 0.180652372784168 0.194924120599996 0.185363441064873 0.185117823639043 0.193757509891231 0.189375907590943 0.188199703702465 3 3 + 8693864 8694307 8693995.636 8693092 8694716 + gene protein_coding_gene FALSE TRUE AT3G24070.1 zinc knuckle (CCHC-type) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13450.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.140243176765713 -1.03250846790898 0.324237469324764 1 -0.0968874030630493 12.3053419204352 -0.140243176765713 0.179792223187748
AT2G22540_at 10.0664018093744 10.2506624000657 10.0929283732483 10.1065172427811 10.5043531817391 10.4240684739221 10.5344974986123 10.4559536633601 10.2717446127138 10.4029806383846 10.2467536708488 10.1111821225367 10.2518287437519 10.2117907641595 10.0926011766649 10.4658927777919 10.3180676193336 10.2775076270328 10.4526371072695 0.0740872810060363 0.0681801016853293 0.0708792908098115 0.0694657704216844 0.0701118509286555 0.072558008157903 0.0703477302607771 0.074389532410446 0.0731015259833065 0.0699376519520573 0.0715994459661395 0.0697587760129623 0.071778068616478 0.0717466244626599 0.0717643811141968 0.0684726293434168 0.0724586156395061 0.0682679537257801 0.0714389811603135 2 2|0 +|/ 9587588 9590199 9589643.833 9586954 9590973 + gene protein_coding_gene FALSE TRUE AT2G22540.1 SVP (SHORT VEGETATIVE PHASE); transcription factor Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. It represses FT expression via direct binding to the vCArG III motif in the FT promoter. Identical to Protein SHORT VEGETATIVE PHASE (SVP) [Arabidopsis Thaliana] (GB:Q9FVC1;GB:Q9SJY1); similar to AGL24 (AGAMOUS-LIKE 24), transcription factor [Arabidopsis thaliana] (TAIR:AT4G24540.1); similar to short vegetative phase protein [Brassica rapa] (GB:ABI96182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.0868732074773744 -1.03239310586945 0.324289101857635 1 -0.0969964976553853 20.6157930881651 -0.0868732074773744 0.037418000513013
AT2G26940_at 3.76947194997946 3.99414129217982 3.6375626861717 4.39956309541310 3.51877855030245 3.95592185775938 3.39103986715046 3.8803192075731 4.33653906875773 3.96135762925634 4.17186410250719 4.42242909518447 4.04307470383351 3.82865253532012 4.58366176802133 4.11988063108942 4.42181503665963 4.16733017702852 3.88247686341691 0.243528430649061 0.243528430649061 0.270570093100854 0.257900839389499 0.251933345257293 0.264552238538736 0.257048063128452 0.257093729742062 0.261244421447201 0.245505113338917 0.245930301000125 0.245941071000344 0.245632594210064 0.262583495676262 0.247271024130109 0.244692715196142 0.246636553742263 0.252734040309381 0.251216896446848 2 2 - 11503603 11504109 11503874 11503596 11504456 - gene protein_coding_gene FALSE TRUE AT2G26940.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G56200.1); similar to tapetum-specific zinc finger protein 1 [Petunia x hybrida] (GB:BAA19113.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.139463726959741 1.03225828611985 0.324349450818673 1 -0.0971239803759492 7.95833132665744 0.139463726959741 0.178305895237224
AT3G07870_at 6.94104547200164 7.19885061125338 7.4527166764651 7.6018324755582 7.87951792640713 7.58763032568406 6.4351032458382 6.79003644940573 7.12785092511321 6.66265287654171 6.15992823948711 5.82633533816282 6.4145403289897 6.67272870838894 5.69095321023703 6.979992400642 6.64714659436996 6.19578904197836 6.93210251892473 0.179372906235049 0.184502059604950 0.18543843262554 0.184770974260379 0.182534787306369 0.190752894745853 0.192790821567295 0.181839078252406 0.196116958816881 0.184437101267601 0.179372906235049 0.181096072914916 0.185004146410934 0.187957552388742 0.179372906235049 0.179372906235049 0.186953820446850 0.182727589152475 0.180416644022857 3 3 + 2511531 2512103 2511795 2510789 2512400 + gene protein_coding_gene FALSE TRUE AT3G07870.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23880.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE89134.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.102528349496327 1.03214658656807 0.324399456882026 1 -0.0972295909396588 13.8513227343143 0.102528349496327 0.0947661878880683
AT1G16560_at 6.81672657402219 7.02876848432415 6.32035398729952 5.9914062441273 6.39332138064996 6.01386860928065 6.31509422945944 6.114436666856 5.86254853234119 5.03877865914963 6.11143001336712 6.30846790187013 6.0903308625437 6.02588040512465 6.0051277949699 5.39903073012818 5.7106348511134 5.62695774047511 5.03303377524737 0.219202077437620 0.207475446681549 0.214186669495004 0.212870688815195 0.210038189478438 0.219286827613728 0.209575232389012 0.207475446681549 0.222814684692748 0.21893911030309 0.207914498566111 0.217229357965279 0.207475446681549 0.222735811671440 0.221028152987559 0.207475446681549 0.223597508795530 0.208005763430195 0.210693146984759 1 1|0 +|/ 5669615 5670238 5669928.5 5668377 5670701 + gene protein_coding_gene FALSE TRUE AT1G16560.1|AT1G16560.2|AT1G16560.3|AT1G16560.4 Per1-like family protein similar to Per1-like protein-related [Arabidopsis thaliana] (TAIR:AT5G62130.1); similar to Per1-like family protein [Solanum tuberosum] (GB:ABB72805.1); contains InterPro domain Per1-like; (InterPro:IPR007217) 0.104629974271771 1.03191440676020 0.324503418333324 1 -0.0974490845844154 11.9848401185166 0.104629974271771 0.100523200379894
AT3G42480_at 1.01108718867970 0.982334391308782 1.11925442173199 1.10963739467826 1.08824372189117 0.689685210586177 0.712877818179861 0.84839183691277 1.18005612165926 0.94411636183509 0.79623797293392 1.23728578785012 1.13303501375882 1.40964622810262 1.06067105688889 1.02763343282560 1.11003447527457 1.29957975265579 1.04612995031922 0.172974697788819 0.172846627237557 0.182959943394829 0.178759922944320 0.172197520656324 0.178251676214174 0.173163243542820 0.1715155366436 0.184248025834443 0.172878667543903 0.174692029638874 0.178357876910566 0.181263807995195 0.176664284524419 0.180471934105660 0.175361994360129 0.172985845477036 0.177737632231978 0.175367923130409 3 3 - 14639357 14639566 14639444.455 14639205 14639621 - gene protein_coding_gene FALSE TRUE AT3G42480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03979.1) 0.0952651827750287 1.03164825710896 0.324622620690932 1 -0.0977006429183778 2.04070546948316 0.0952651827750287 0.0730389395268454
AT1G32130_at 9.3814407824367 9.65424193454962 9.6439066280913 9.72915033946671 9.91667159009902 9.53621563043546 9.57718975866015 9.31180091323033 9.12853920650947 9.16961974834964 9.24449612428607 9.31963071002482 9.03971889826017 9.11014802116607 8.74015448096082 9.18442048468198 9.19981895988856 9.30313706520894 9.1920315451081 0.121006069387926 0.114954827413872 0.123570156595653 0.116854299270973 0.114954827413872 0.121585031263363 0.121958365392440 0.117105839093417 0.128564237948942 0.119581774892196 0.116521788939246 0.116457240118083 0.116078481465883 0.12153252789465 0.12382104054394 0.118718545826096 0.129279643716154 0.120398233597642 0.118473202513444 1 1|0 -|/ 11559138 11560351 11559603.444 11558861 11561845 - gene protein_coding_gene FALSE TRUE AT1G32130.1 similar to IWS1 C-terminus family protein [Arabidopsis thaliana] (TAIR:AT4G19000.1); similar to Os01g0147200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042011.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53710.1); contains InterPro domain IWS1, C-terminal; (InterPro:IPR008654); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990) 0.102305729770599 1.03163921475449 0.324626671127087 1 -0.0977091886166288 18.7468709103122 0.102305729770599 0.094289375583735
AT1G23680_at 2.15584017783219 1.66365860793391 2.2124154391558 1.74181305875508 1.72193898407012 1.96089310091352 1.34389851043823 1.91092848702804 2.10130487895830 2.01010899971806 1.84383587379683 2.15911956422644 2.17106898825394 2.13087148243367 2.30388016533293 2.12470199445431 2.51325561779575 2.42531378555022 2.15873175941835 0.203798144973895 0.201759089561840 0.205726575311904 0.209171233308960 0.200512831421094 0.201631942486754 0.212389290181617 0.204916895380831 0.203141105015076 0.200512831421094 0.208487065116078 0.202239632588308 0.210418309640949 0.202566639459575 0.201286135460975 0.204299656433233 0.210626131468073 0.201520175131612 0.207105012659387 1 1 - 8376707 8377033 8376855.909 8376676 8377145 - gene protein_coding_gene FALSE TRUE AT1G23680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23600.2); contains InterPro domain Protein of unknown function DUF220; (InterPro:IPR003863) 0.129820543932238 1.03151066838759 0.324684256306665 1 -0.09783066796081 3.9884505357719 0.129820543932238 0.158827168487311
AT3G52880_at 10.6370348670187 10.8288392547295 10.9848438350744 10.9869011264566 11.0113217836400 10.6079485662133 11.044994072506 10.9574715105740 10.6940368327170 10.8832648679485 11.0040678489120 10.9373841282438 10.7494669387793 10.9960287615863 11.0099607777891 10.9276775463242 10.486460979307 10.8365182296528 10.5379175793639 0.100456919377386 0.0929382934838813 0.097051655013925 0.0949107263153414 0.0926751915651246 0.102828954035923 0.094044456005397 0.094306610569883 0.104287646887751 0.094135261429069 0.0926751915651246 0.0926751915651246 0.0947814665133012 0.096128587972424 0.0926751915651246 0.0926751915651246 0.0969333342434839 0.0942377588742232 0.0946373906740886 3 3 - 19612457 19613209 19612779.273 19612190 19615432 - gene protein_coding_gene FALSE TRUE AT3G52880.1 ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 3 (EC 1.6.5.4) (MDAR 3) [Arabidopsis Thaliana] (GB:Q9LFA3;GB:Q8LBV9); similar to monodehydroascorbate reductase, putative [Arabidopsis thaliana] (TAIR:AT5G03630.1); similar to monodehydroascorbate reductase [Brassica rapa subsp. pekinensis] (GB:AAK72107.1); similar to monodehydroascorbate reductase [Rheum australe] (GB:ABI35909.1); similar to monodehydroascorbate reductase [Brassica oleracea] (GB:BAD14934.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.0970207298100976 1.03150631209790 0.324686207935746 1 -0.0978347845429486 21.6691787493603 0.0970207298100976 0.07876616947488
AT1G36670_at 1.73638090898353 1.82415484897996 2.22796412657068 1.90091855169234 1.60026581753485 1.83565002494100 1.82299159552453 1.72051036913852 1.62073866742885 1.82518501651358 1.57819856283377 1.62910763487942 2.20236341131743 2.08224356810997 1.87818795022714 1.64037191660076 1.85474159083974 1.88260446513989 1.85767692416072 0.165383462041302 0.158032484252114 0.161318799416863 0.164821721770554 0.157268146401648 0.160443542694901 0.161083680492387 0.161175769429701 0.164611958942614 0.157268146401648 0.169127370834583 0.157268146401648 0.168082711866271 0.160867808827776 0.164865010688422 0.158001974047788 0.159637790298377 0.159623617194980 0.161702376079933 1 1 - 13865675 13866460 13866194.7 13865447 13866548 - gene protein_coding_gene FALSE TRUE AT1G36670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37050.1) 0.0954003588269437 1.03148932027859 0.324693820398243 1 -0.0978508412426072 3.63927665885129 0.0954003588269437 0.0735372778491489
AT4G16060_at 6.36261567668025 7.02776619694239 6.17582104138557 6.82819136494487 6.30382666614143 6.62683951842307 6.04460996119111 6.59120343939804 6.72446152566906 6.94646443128102 7.38858389991159 7.30569589070027 6.64470574265039 7.16918251909594 7.67151911593926 7.08606928436141 6.76611537133584 6.9052312553777 6.72468043538414 0.21798664129128 0.212299849682676 0.201635882854406 0.205633660343154 0.202443030634530 0.214879262566730 0.206288963320438 0.201581518773948 0.213013144242860 0.214749563290960 0.213466681413777 0.201581518773948 0.202240111316455 0.217731258812857 0.208625345390906 0.207790925070515 0.211327089602239 0.204364026959771 0.210905713207645 4 4|0 +|/ 9094779 9096121 9095454.875 9094415 9096293 + gene protein_coding_gene FALSE TRUE AT4G16060.1 similar to Os05g0358400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055302.1); similar to hypothetical protein MED92_03118 [Oceanospirillum sp. MED92] (GB:ZP_01165985.1) 0.147861624990467 1.03120378394737 0.324821762669345 1 -0.098120631539466 13.4529459076548 0.147861624990467 0.195108215488791
AT1G20730_at 2.63081310550926 2.44678099370742 2.77978124116967 2.41987243316193 2.04881775039011 2.69865526684793 2.36204552318707 2.82689327069393 2.92071175332662 3.00943506749081 2.61590304368543 2.60728365453826 2.51801472804648 2.62316974504124 2.96991589740172 2.18236354042264 2.49005442972504 2.4575725527076 2.27162328216261 0.209905080141940 0.208088179210685 0.20506984158339 0.211644721839234 0.213922031943524 0.213672606303562 0.216027670768213 0.208168986123729 0.210276990380006 0.210811848529229 0.205926610197384 0.204762323709089 0.204986754163492 0.203046013433191 0.213670447455293 0.203046013433191 0.207069326768313 0.207031795472443 0.205823162501617 1 1 + 7198090 7198632 7198329 7194266 7198671 + gene protein_coding_gene FALSE TRUE AT1G20730.1 similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT1G20240.1); similar to H0409D10.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66750.1); similar to Os09g0323500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062871.1); contains InterPro domain Protein of unknown function DUF833; (InterPro:IPR008551); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.127870109547986 -1.03064338216452 0.325072974795579 1 -0.0986499542532392 5.17268648138645 -0.127870109547986 0.154956357563604
AT4G38420_at 5.58167831031298 5.53511914542652 3.95239160367162 4.4302332003268 5.17998146194178 5.2559331985454 3.72682173070965 4.17141960272730 4.46872510121609 4.00065128773947 3.71251787042268 4.52546385400917 3.66568008662471 3.43792352573473 4.23366900233021 4.69564777128093 3.92261205402883 4.06438429252891 4.13845134851778 0.235473687730876 0.22163731697738 0.226902848336995 0.228865854095941 0.23919853311925 0.237798088448022 0.22273205110839 0.223975286845179 0.228022361658742 0.232177748559917 0.225879951985706 0.220035921227642 0.22408770116671 0.229682730559419 0.223836520672792 0.225126707434573 0.232962014022207 0.220807853068422 0.229267922213435 4 4|0 +|/ 17984418 17985129 17984753.3 17982768 17985366 + gene protein_coding_gene FALSE TRUE AT4G38420.1 SKS9 (SKU5 Similar 9); copper ion binding / oxidoreductase similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS10 (SKU5 Similar 10), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G28090.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.109748384938568 -1.03045116732342 0.325159172475822 1 -0.0988314555870916 8.84662055818 -0.109748384938568 0.113997752586391
AT1G69295_at 5.71445283021106 5.89986276779122 5.04934495870737 5.81225767429129 5.54667521668873 6.00360496270111 6.24928812016078 6.67441454239068 6.11549437132681 5.58412219085677 6.41141953450016 6.67897428661597 6.64438377146625 6.50170685749586 6.98351787260203 6.94979434671968 6.45696172071499 6.62546297131872 5.85453486916591 0.173616528099250 0.163853954342167 0.171979904586793 0.175322397951804 0.166138285216919 0.169900516874344 0.165743642016371 0.175340720431169 0.178586321311400 0.171289564011511 0.164182219785669 0.163376474527024 0.164882594695689 0.168321218582027 0.170514141421755 0.163376474527024 0.171434653321134 0.165255962667132 0.170431984056701 1 1|0 -|/ 26054248 26055131 26054579.2 26053860 26056230 - gene protein_coding_gene FALSE TRUE AT1G69295.1 beta-1,3-glucanase-related similar to beta-1,3-glucanase-related [Arabidopsis thaliana] (TAIR:AT1G26450.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); contains InterPro domain X8; (InterPro:IPR012946) 0.136804998844033 1.03002201161002 0.325351686278188 1 -0.0992365926477309 12.1226933744323 0.136804998844033 0.173567005917336
AT1G09850_at 7.45690863061348 7.83884067024757 7.18075407548987 7.45912704846238 7.43617407920568 6.88963516382768 7.69421868624866 7.63559962887569 5.64030584115794 6.75322404581722 6.33191746480412 6.85454256774752 6.84762655396086 6.55655320795877 7.35322103415812 6.71804128099994 6.59652000756699 7.2769021927607 6.12553192771987 0.192289476412863 0.184648207198486 0.187060565268185 0.185052727016030 0.185012327237116 0.190103453804821 0.193348608875706 0.190488672433652 0.203631668335861 0.190924252630500 0.195567132660577 0.182336579712708 0.190182534609375 0.204627746546742 0.185347038758306 0.181150368840260 0.200821637946177 0.189637700035072 0.191417804357314 1 1 + 3203115 3203799 3203513.091 3201801 3204152 + gene protein_coding_gene FALSE TRUE AT1G09850.1 XBCP3 (XYLEM BARK CYSTEINE PEPTIDASE 3); cysteine-type peptidase Arabidopsis thaliana papain-like cysteine peptidase similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to cysteine protease [Hevea brasiliensis] (GB:ABG33750.1); similar to Os05g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055994.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Granulin; (InterPro:IPR000118) 0.114462810798167 1.02992504260898 0.3253951970691 1 -0.0993281156703457 13.9438753196929 0.114462810798167 0.125450257938243
AT1G68430_at 1.38128410962205 1.15660908473081 1.44942257722847 1.71288129396746 1.7969585504715 1.06836393006864 1.91749790357182 1.79442805427400 1.3744744766914 1.9300329391391 1.92150515140407 1.89448360170849 1.65422473230124 1.77255098196053 2.33312288626947 1.94674471869755 1.74312747562470 2.01885214625709 1.53219523349572 0.222116095246652 0.208970905718439 0.210499052046471 0.208970905718439 0.209829602909267 0.208970905718439 0.213732842059319 0.213045499656277 0.214407011488337 0.220913452256517 0.224288568470038 0.210741832162199 0.208970905718439 0.217644633568040 0.220497176693693 0.213213587389412 0.232084790811145 0.210141171297605 0.221100261504355 1 1 - 25658659 25659050 25658863.818 25658568 25659107 - gene protein_coding_gene FALSE TRUE AT1G68430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G66890.1) 0.121397022610086 1.02979049090124 0.325455578692499 1 -0.0994550991400396 3.29608602710183 0.121397022610086 0.141215751891543
AT2G47250_at 8.84119496078132 8.91180325810955 8.94884623506891 8.84589635458737 9.1788953319301 8.92010666721202 8.66744639794728 8.4291825610851 7.99505453217793 8.05140945028219 7.85567391966266 8.1134500496637 7.83531542490596 8.11351269918997 7.88277099124485 7.86776896020404 8.10846140682264 7.8041357328162 8.0234630964047 0.163787728947006 0.161622319710961 0.162917799229112 0.151937047294009 0.150121706110000 0.160255567813614 0.149776124294863 0.15248664379334 0.160248814952201 0.154603072697313 0.163506817366152 0.151530102417164 0.154392633701329 0.154445068913310 0.161136412849812 0.156736643157233 0.159839310132167 0.169522993017144 0.159326647148218 2 2|0 -|/ 19407035 19407788 19407353.556 19406764 19410114 - gene protein_coding_gene FALSE TRUE AT2G47250.1 RNA helicase, putative Identical to Probable pre-mRNA-splicing factor ATP-dependent RNA helicase (EC 3.6.1.-) [Arabidopsis Thaliana] (GB:O22899); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G62310.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95605.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE87664.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL50218.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.092678237247132 1.02976162865250 0.325468532042302 1 -0.0994823362037408 16.8283940580162 0.092678237247132 0.0645949426914666
AT3G45590_at 4.53120736119904 4.01052453225675 4.40557840331831 3.98860902240572 4.81652367718394 4.40505747794618 3.51936433572385 3.66120127686249 4.06535899036269 3.53773298039699 3.11603471442043 2.53078661582542 3.3207435573459 3.13543705372433 2.50438511158197 3.39034522511524 3.14395429492732 3.34390157698247 3.71798438247286 0.225986365194598 0.225022200334296 0.220506155554953 0.226091174878209 0.221204243767848 0.227326717176416 0.219362056096490 0.228796371771622 0.24082151628116 0.219362056096490 0.222103642785918 0.225310856625038 0.221041935449411 0.220211324129538 0.222631241888182 0.221662309022954 0.231382956402457 0.225103302077234 0.221090384985963 3 3 + 16744200 16744717 16744480.636 16743578 16744839 + gene protein_coding_gene FALSE TRUE AT3G45590.1|AT3G45590.2 ATSEN1 (SPLICING ENDONUCLEASE 1); tRNA-intron endonuclease|ATSEN1 (SPLICING ENDONUCLEASE 1) Encodes a catalytic subunit of tRNA splicing endonuclease. Identical to tRNA-splicing endonuclease subunit Sen2-1 (EC 3.1.27.9) (AtSen1) (tRNA-intron endonuclease Sen2-1) (SEN1) [Arabidopsis Thaliana] (GB:Q9M1E8;GB:Q9S7L3); similar to SEN2 (SPLICING ENDONUCLEASE 2), tRNA-intron endonuclease [Arabidopsis thaliana] (TAIR:AT5G60230.2); similar to tRNA intron endonuclease, catalytic C-terminal [Medicago truncatula] (GB:ABE94660.1); contains InterPro domain tRNA-intron endonuclease; (InterPro:IPR006676); contains InterPro domain tRNA intron endonuclease, catalytic C-terminal; (InterPro:IPR006677) -0.119812915150395 -1.02927191794397 0.325688372131332 1 -0.099944378046937 7.58445357910432 -0.119812915150395 0.137836298734489
AT3G28970_at 8.59301564788031 8.66298388972775 8.8134788473504 8.71408563948442 8.73329016796708 8.66046822758172 8.63834879843304 8.63834011314728 8.45954059972708 8.48306987554144 8.22171861796261 8.06550907579595 8.2160417053721 8.23428971762367 8.17936241995258 8.51592000477694 8.20469168828827 8.28333405921141 8.57775852847437 0.152058497997296 0.145538000542142 0.149630646976139 0.142621153376791 0.145845157899960 0.147189810009208 0.142379530991594 0.146874105427508 0.151303122681126 0.139366394461769 0.148269241274400 0.142172290498037 0.141775358370746 0.145561960660921 0.148254050713290 0.145215995720188 0.152818655168006 0.139376220523289 0.139661137712029 3 0|3 /|- 10989232 10989872 10989471.333 10989024 10991158 - gene protein_coding_gene FALSE TRUE AT3G28970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12760.1); similar to Protein of unknown function DUF298 [Medicago truncatula] (GB:ABE80372.1); contains InterPro domain Protein of unknown function DUF298; (InterPro:IPR005176) -0.084761324246273 -1.02885599257859 0.325875175242837 1 -0.100336663888700 17.0552004559651 -0.084761324246273 0.0245210579523509
AT3G02360_at 10.3333730644167 10.4592185844599 10.5008302212859 10.7535568387520 10.2650354364681 10.3269863325707 10.33217641802 10.5449553677986 9.9470615598541 10.2462473823135 10.1468776824167 10.2025423173791 10.0280830679022 10.1820995431205 10.128041872118 10.2208240969422 10.3147842908681 10.4268464557071 10.0065421943353 0.0730005222450888 0.07082549119116 0.0725436148715871 0.0703152400491095 0.0685489300143632 0.070864437625788 0.0695860228235206 0.0727217170493373 0.074044807494244 0.069781484330344 0.070624242180658 0.0686028664536737 0.0688625297574915 0.0736377184550975 0.0711653862582076 0.0685489300143632 0.0733835276930337 0.0685489300143632 0.0697934144945321 3 3 + 483373 483915 483691.273 481905 484154 + gene protein_coding_gene FALSE TRUE AT3G02360.1|AT3G02360.2 6-phosphogluconate dehydrogenase family protein similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96861.1); similar to 6-phosphogluconate dehydrogenase [Glycine max] (GB:BAA22812.1); similar to 6-phosphogluconate dehydrogenase (GB:AAB41553.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal; (InterPro:IPR006114); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal extension; (InterPro:IPR012284); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain 6-phosphogluconate dehydrogenase, decarboxylating; (InterPro:IPR006113); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal core; (InterPro:IPR012283) 0.0919083594505834 1.02857666159246 0.326000674855449 1 -0.100600046853521 20.5759562636253 0.0919083594505834 0.0621120727770091
AT1G10030_at 4.25129333688139 4.78127251168033 3.56876581632709 3.72080056990047 4.58521698652399 4.31552517659321 4.97943721018784 5.47076134647364 5.05870783802944 4.85317186068018 5.91810542066625 6.2327018093406 4.92526427859338 5.71077664585166 6.10596461766825 5.67924724188494 4.60916332381096 5.51133877242295 5.09198651877267 0.288603792434541 0.287813552240848 0.288259071252385 0.286246653934938 0.285910050227777 0.298089396197021 0.290336468592915 0.286964504703132 0.295521708378162 0.286408240645428 0.291020264309844 0.285801674304255 0.288822767121364 0.290210874780708 0.290874722106733 0.286543938785194 0.297600244089603 0.292404288869255 0.291214638990172 1 1|0 +|/ 3274003 3275605 3274981 3273827 3275839 + gene protein_coding_gene FALSE TRUE AT1G10030.1 ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) Identical to Probable ergosterol biosynthetic protein 28 [Arabidopsis Thaliana] (GB:O80594); similar to Protein of unknown function UPF0143 [Medicago truncatula] (GB:ABE93132.1); similar to Os12g0633200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067350.1); contains InterPro domain Erg28-like; (InterPro:IPR005352) -0.11891621967525 -1.02838865028316 0.326085165986039 1 -0.100777291345219 9.7530636207913 -0.11891621967525 0.136057241988410
AT4G09510_at 4.8279635721940 4.55448204441645 4.13097030317644 4.3115283169012 4.06373644923962 3.87031454728879 4.46987708782264 4.17725388398276 4.12961467433935 4.44077317684387 4.69754835286822 5.11067916546803 4.57192643707149 5.00557857263394 5.22611672550736 5.02248297015312 4.22373451836337 4.98779488583668 4.16842209548549 0.206772049456400 0.199581932864675 0.195013320283657 0.194821362802047 0.190476764276549 0.212926723666835 0.191553289504045 0.201332511413566 0.202295238578081 0.1941642057321 0.193734364042723 0.194674355362697 0.197107412405822 0.193907200700259 0.190476764276549 0.194027749547894 0.205372723132358 0.193020984945270 0.200102651342588 4 4|0 -|/ 6021412 6021905 6021717.8 6021161 6023870 - gene protein_coding_gene FALSE TRUE AT4G09510.1|AT4G09510.2 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT4G34860.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937)|similar to beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT4G34860.2); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.3); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Neutral/alkaline invertase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22388.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) 0.0981029891562107 1.02823108481032 0.326155987467031 1 -0.100925813352422 8.85176711848307 0.0981029891562107 0.0830723158587328
AT1G18370_at 1.48279023589547 1.63617892112238 1.62403310982484 1.36331828348777 1.18441463387133 1.18740121339516 1.34755140493554 1.51270006598961 2.14055691588475 2.13456437984392 1.82890726557179 2.57327960149325 1.68919635474876 1.43193688869374 2.26799754031226 1.47072970083266 1.54311655749240 2.01244123789667 1.36381762855668 0.180239127859771 0.176624163167152 0.184757648654106 0.182154857386632 0.177650540160872 0.182129668337212 0.176624163167152 0.183423522372744 0.176624163167152 0.180311566528297 0.177922491020813 0.181215971390846 0.178832248330693 0.177707318933845 0.187609455096636 0.182058518261949 0.182622274060403 0.180354018846098 0.184139297467394 1 1 - 6319733 6320354 6320107.273 6319643 6323813 - gene protein_coding_gene FALSE TRUE AT1G18370.1 HIK (HINKEL); microtubule motor Mutant has cytokinesis defects; seedling lethal similar to TES (TETRASPORE), microtubule motor [Arabidopsis thaliana] (TAIR:AT3G43210.1); similar to kinesin-like protein NACK1 [Nicotiana tabacum] (GB:BAB86283.1); similar to kinesin heavy chain [Zea mays] (GB:AAK91813.1); similar to kinesin-like protein NACK2 [Nicotiana tabacum] (GB:BAB86284.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.0912295057779506 -1.02811872168519 0.326206498672971 1 -0.101031716154626 3.28322195930292 -0.0912295057779506 0.0596432112590356
AT2G20770_at 3.86749612387628 3.43372505359594 3.21889262418261 2.93247745932065 3.27026972797065 3.49888268462619 2.92761090533113 3.14308406693357 3.19313508943802 2.47190790606989 3.04169231429595 3.14017323991177 3.01049851090908 2.81359788881946 2.92004002815521 2.90350602336513 3.01274843025289 3.08382160853701 2.33303907460280 0.216603085559326 0.214227433504483 0.211621529145284 0.211621529145284 0.218663795396918 0.213141036155342 0.214826161235111 0.21353273467911 0.212820233062031 0.214937672504401 0.217876043734619 0.211621529145284 0.212958219163214 0.220761847878503 0.219587908344095 0.216986571292804 0.222084837925211 0.216301809226357 0.218518722184982 2 2|0 +|/ 8953619 8954091 8953912.3 8952399 8954391 + gene protein_coding_gene FALSE TRUE AT2G20770.1 lanthionine synthetase C-like family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT1G52920.1); similar to Lanthionine synthetase C-like; Glycoside transferase, six-hairpin [Medicago truncatula] (GB:ABE84131.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Lanthionine synthetase C-like; (InterPro:IPR007822) 0.105941992709018 1.02768289971402 0.326402471041057 1 -0.101442391934344 6.11494838684682 0.105941992709018 0.105106108179909
AT3G17190_at 1.50482499998322 1.89462112916430 1.95153917541169 1.93319889344097 1.3056858953074 1.89807836352332 1.51625449744371 1.78186661299224 1.90671557641283 1.58582781174642 1.99148140415319 1.63622521110476 1.99166580575042 1.84471140750814 1.39646287696594 1.78880774149714 1.76701798266232 2.02030892339822 1.51511740738792 0.185979821628078 0.185768358217750 0.181978570653219 0.182374038671578 0.187498358614488 0.183643344056134 0.185659767225122 0.181978570653219 0.190791077896545 0.197124434726228 0.187850757908967 0.183421172996129 0.182022170353425 0.183444004963341 0.189980765280032 0.184237974298848 0.183245863866225 0.189153609396035 0.181978570653219 3 3|0 +|/ 5867400 5867893 5867636.1 5867398 5867954 + gene protein_coding_gene FALSE TRUE AT3G17190.1 unknown protein 0.116549337986304 1.02685064610144 0.326776946222451 1 -0.102226234485027 3.46016141306456 0.116549337986304 0.131083170131411
AT3G46460_at 7.95436467526455 8.04226032681339 8.1920755787671 8.00916409649511 8.53071196240107 7.96647781058362 8.81971633575877 8.39893495944651 8.2276671032674 7.86744849656258 8.32506809968626 8.17142017018526 8.33959250844133 8.5270523337301 8.04729754310961 8.23184307469439 8.06733818835714 8.26224109227241 7.56859102139942 0.129656499812391 0.130522100806034 0.130691100204457 0.141797009757829 0.127584105314664 0.139204616067361 0.132122885337726 0.134342719313227 0.141396635516420 0.141845804122903 0.137888985884441 0.131590255262738 0.131158230363342 0.131330754794949 0.145493409867478 0.132281114265215 0.133781263576255 0.130071564775898 0.141177785122188 3 3|0 -|/ 17107323 17108275 17107740 17106865 17108437 - gene protein_coding_gene FALSE TRUE AT3G46460.1 UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19) (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) (UBC13) [Arabidopsis Thaliana] (GB:Q42541); similar to UBC14 (ubiquitin-conjugating enzyme 14), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G55380.1); similar to ubiquitin-conjugating enzyme [Arachis hypogaea] (GB:ABI84264.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.114683853487006 1.02684915986848 0.326777615242797 1 -0.102227633806121 16.3064051348843 0.114683853487006 0.126767638353193
AT1G76790_at 6.55406709992875 6.82959521700947 3.44343907965321 3.50167836284883 3.43142560761238 3.71355472413949 2.04064671295291 1.87870127661932 0.777948492815546 1.62034932915488 1.92824442299966 2.01039893240807 2.63708193859326 3.35393843304950 1.90020149093527 1.15705970396983 2.22002703899586 1.95873624040855 1.05778252458547 0.284118421684685 0.281628915806671 0.264685640457414 0.253787296039964 0.255136431730167 0.253565832723822 0.252017599790788 0.250901133016209 0.256436132427928 0.249426722631443 0.248119166103207 0.245070254615108 0.249154925972230 0.252941714480374 0.245070254615108 0.254988876243647 0.245070254615108 0.245070254615108 0.266539182342859 1 1|0 -|/ 28827271 28827867 28827478.889 28827080 28828567 - gene protein_coding_gene FALSE TRUE AT1G76790.1 O-methyltransferase family 2 protein similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21100.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21130.1); similar to phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] (GB:BAD18975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.095228054960282 1.02661856266021 0.326881429737171 1 -0.102444726301835 5.57300741377319 0.095228054960282 0.0744599179392308
AT2G39705_at 5.75283349333209 6.19233503228177 5.68892330033621 6.00438363241028 6.60914539522652 6.08074815315507 5.23326398530546 5.37748108361822 5.34627681835021 6.21534318567376 5.15010140525285 5.98426590393423 5.81850902201251 5.03781165320420 5.60131012271882 6.68579856104621 6.2109504991992 5.25156977093774 6.25687913438416 0.187916921815883 0.207919500889168 0.188826711411909 0.195029203235646 0.191044449453895 0.210400211303778 0.194856407489190 0.188857930618577 0.198915600458045 0.191789916465333 0.191848715895253 0.189880180979761 0.193539083871864 0.193058464900385 0.190021572856339 0.191698919929071 0.200056894882200 0.195836072931440 0.197479972992090 2 2 + 16564128 16564354 16564249.364 16563934 16564655 + gene protein_coding_gene FALSE TRUE AT2G39705.1 DVL11/RTFL8 (ROTUNDIFOLIA LIKE 8) similar to DVL8/RTFL7 (ROTUNDIFOLIA LIKE 7) [Arabidopsis thaliana] (TAIR:AT3G55515.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83577.1); contains InterPro domain DVL; (InterPro:IPR012552) 0.117430813066572 1.02635151894225 0.32700168296692 1 -0.102696081533055 11.6959089245037 0.117430813066572 0.133227258929016
AT4G08880_at 0.668060429508358 0.909697656813059 0.907419930764038 1.02667437402563 0.927002906661799 0.94795230322841 0.70225741096733 1.37371045881162 1.45205358482441 1.55071503294954 1.47990814879498 1.24877208964031 1.50529998808571 1.43889328913914 1.03778881953521 1.12295436803248 1.03360958613914 1.11777074114587 1.54182483058385 0.21442282257785 0.221278368163727 0.218974340368710 0.229938311471108 0.226469430171341 0.220361796883935 0.228683504586073 0.224877152871615 0.223634117095843 0.224345454939271 0.223067409067269 0.220893700229289 0.232032005937313 0.223208033348947 0.216934053832967 0.227147177418570 0.223870191832593 0.221154072053951 0.221269657505037 4 4 + 5691154 5691224 5691189.091 5685008 5691310 + gene protein_coding_gene FALSE TRUE AT4G08880.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD65034.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Tetracyclin repressor-like, C-terminal; (InterPro:IPR011075) -0.113954482163474 -1.02608596904571 0.327121296050874 1 -0.102945978208218 2.31434148964755 -0.113954482163474 0.125258376841982
AT2G47260_at 2.44667568812902 2.23226757789793 2.30726841315877 2.21795034077048 2.74816583600726 2.80995238770213 2.34254010373900 2.11184485371718 2.10705174976534 2.49422315574589 1.93158620525582 2.88084736334599 1.99039317622200 1.91204524444659 2.58216212622066 2.29208033124327 2.26862616260158 2.64674463120222 2.50720719841909 0.181787623877276 0.176636898968187 0.186405785642086 0.185839960926523 0.175223963615883 0.184529075673382 0.176599405188232 0.175997771774775 0.187518543692875 0.184760846552739 0.187037246475883 0.175496572710125 0.177272588767329 0.189909976122558 0.174723850919369 0.177998321354280 0.189739058768642 0.183830611067924 0.182773471050617 2 0|2 /|- 19412130 19412512 19412341.8 19411890 19414154 - gene protein_coding_gene FALSE TRUE AT2G47260.1 WRKY23 (WRKY DNA-binding protein 23); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 23 (WRKY DNA-binding protein 23) (WRKY23) [Arabidopsis Thaliana] (GB:O22900); similar to WRKY68 (WRKY DNA-binding protein 68), transcription factor [Arabidopsis thaliana] (TAIR:AT3G62340.1); similar to WRKY54 [Glycine max] (GB:ABC26920.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.090534404481351 1.02589246458055 0.327208477758895 1 -0.103128043298174 4.74336049499557 0.090534404481351 0.0576525144368339
AT1G21650_at 2.62454715355703 2.53447023061222 2.65141631504009 2.91557564489236 2.46220697691304 2.41037445956113 2.85941770855416 2.55544388510862 2.10677846104714 2.74445707650603 2.37930348761302 2.33662908428786 2.58456683240246 2.35848054855345 2.28101047740847 2.22256343272999 2.23130585836845 2.22034509449568 2.59457488269287 0.211488788089778 0.202554893638381 0.197722038872419 0.20347172987724 0.196093191312590 0.202650848691187 0.198177242146850 0.200849664184593 0.198927063063610 0.206990898301331 0.210961632302078 0.198001348575206 0.201136487059509 0.199329530488661 0.197015598939709 0.195297974258491 0.199885590330893 0.195297974258491 0.196584547494474 1 0|1 /|- 7593520 7594609 7593903.556 7593502 7604141 - gene protein_coding_gene FALSE TRUE AT1G21650.1 preprotein translocase secA family protein similar to preprotein translocase secA subunit, putative [Arabidopsis thaliana] (TAIR:AT4G01800.1); similar to preprotein translocase, SecA subunit [Synechococcus sp. JA-3-3Ab] (GB:YP_474232.1); similar to preprotein translocase secA family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91870.2); similar to preprotein translocase, SecA subunit [Oryza sativa (japonica cultivar-group)] (GB:AAX96055.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain SecA Wing and Scaffold; (InterPro:IPR011116); contains InterPro domain SecA preprotein cross-linking region; (InterPro:IPR011130); contains InterPro domain SecA protein; (InterPro:IPR000185); contains InterPro domain SecA DEAD-like; (InterPro:IPR011115); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0943688000613049 -1.02535655845785 0.327450015426049 1 -0.103632123197326 5.03103775114538 -0.0943688000613049 0.0719750759104488
AT2G22850_at 2.05851070124158 2.57520474748210 1.89947311562438 2.07733038980671 2.29318349902267 2.25042514942619 2.30828869941208 1.91467530176175 1.95280727086655 2.28593797045261 2.69178110305635 2.73510014040233 2.90810364478146 2.89295142095745 2.70645686536983 2.77215505522034 2.32327057158155 2.19752402809760 2.80731989982128 0.205825463381555 0.199001975393424 0.198703476939534 0.19470049599775 0.195173043451179 0.202984970914234 0.197443639324255 0.200494988864851 0.202512167197383 0.195004932300526 0.204244603082528 0.19470049599775 0.196796929494890 0.196556343943313 0.198808824832433 0.198572769100613 0.201718764725889 0.195526870578997 0.195172287919736 2 2 - 9739705 9740256 9740065.182 9739555 9740422 - gene protein_coding_gene FALSE TRUE AT2G22850.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT4G37730.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96858.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.110331324649413 1.02531709309195 0.32746780804389 1 -0.103669236374029 4.67318956750394 0.110331324649413 0.116778657960099
AT2G22330_at 9.51224046764584 9.76245029198258 8.21525444127913 8.26413080162075 8.1551981754655 7.7728134823274 9.19354035290519 9.05356725627552 6.10979149021884 7.61247704914413 7.9680977318596 8.80216551123842 8.46556140499115 8.25661652861628 7.14437100966924 8.46292808555707 8.04645681232469 8.551917573313 7.66534821287195 0.181331543097369 0.181704789296958 0.187652213403700 0.178009559731277 0.17780834565914 0.195912731879318 0.178024801768257 0.180733181695401 0.203346635812805 0.177385959694506 0.184950439714430 0.175569061428619 0.175714653987842 0.188750271860408 0.187361142720790 0.175569061428619 0.187430038435213 0.178618206432889 0.186261941693473 2 2 + 9497503 9498029 9497792.727 9495634 9498267 + gene protein_coding_gene FALSE TRUE AT2G22330.1 CYP79B3 (cytochrome P450, family 79, subfamily B, polypeptide 3); oxygen binding Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. similar to CYP79B2 (cytochrome P450, family 79, subfamily B, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39950.1); similar to cytochrome P450 [Brassica napus] (GB:AAN76810.1); similar to Cytochrome P450 79B1 (GB:O81345); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0977708094556093 -1.02451985370988 0.327827390026605 1 -0.104418711426100 16.4118843668250 -0.0977708094556093 0.0831391016452663
AT4G16140_at 1.61719225359091 2.03660772018317 1.27628200023553 1.02812215035551 1.10570863886080 1.53968298209462 1.53020501091637 1.87364028108154 1.77408511972839 1.62609360183851 1.79825920026402 2.19985442668714 1.65670085228869 2.23372065227858 2.31735325469274 2.01492398785472 1.32197302434359 1.56271769720156 1.37184883749667 0.237497430283645 0.238680555282449 0.240144413965644 0.248649637213723 0.239268216570192 0.242465535368691 0.248240534284534 0.24302416520881 0.258741789344377 0.250071065672147 0.238835703857788 0.249590365193001 0.237709126232108 0.238239579323072 0.245931800011472 0.243703400610152 0.248609058933271 0.241020992991067 0.244645097704726 4 4 + 9129070 9129521 9129317.818 9129028 9129853 + gene protein_coding_gene FALSE TRUE AT4G16140.1 proline-rich family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G49280.1); similar to OJ1116_C07.3 [Oryza sativa (japonica cultivar-group)] (GB:BAC00686.1); similar to Os01g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042851.1) -0.114725169813096 -1.02398207625053 0.328070111140018 1 -0.10492400271739 3.24036199965109 -0.114725169813096 0.127612316144642
AT2G47120_at 1.08507607100789 0.890663541119935 1.13805615087803 1.26786513825606 0.438207514491509 1.00293883211553 0.979986211214205 0.561223867322582 1.25237561182550 1.35253756352424 1.19140539324191 1.10770509052696 1.04111000537277 1.0667667726762 1.14795195889857 1.15333527218987 1.21328553827166 1.09144059769633 1.7123485746628 0.199947848211161 0.198298862505205 0.199375148193639 0.199986525394097 0.205228806156223 0.200794713167038 0.196647538193657 0.196921072578617 0.206058855851642 0.198973159474061 0.199083793386415 0.197792992817973 0.200133377101958 0.199704256458401 0.200741667225464 0.203171829451935 0.201139910348025 0.196112517605188 0.210361848367596 2 2 - 19354432 19354918 19354692.182 19354429 19355308 - gene protein_coding_gene FALSE TRUE AT2G47120.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68713.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.114966342562884 -1.02382249146754 0.328142163942893 1 -0.105073905907769 2.20335833010745 -0.114966342562884 0.128215868362776
AT4G36180_at 2.05492837802373 2.28825275553279 1.59866219430929 1.52313711885482 1.09337045428112 1.63013474815939 1.24594108844399 1.49347530673917 1.97046244033432 2.02477492682139 2.35986891217173 2.58278094139886 1.91204873881347 2.15731556219801 2.20528421850928 1.72993424091733 1.55648288018230 2.15478120488642 1.96989980471793 0.190565603294495 0.192044252380194 0.194811469792257 0.190386806758147 0.190871565470037 0.190386806758147 0.190386806758147 0.195895432790749 0.199383253894739 0.199014289620813 0.197474499508974 0.197648292932457 0.197926483845854 0.195339620045129 0.190386806758147 0.198186318779576 0.198463912868823 0.195640583946939 0.195373829423667 4 0|4 /|- 17120260 17120626 17120445.2 17120088 17123844 - gene protein_coding_gene FALSE TRUE AT4G36180.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G75640.1); similar to Os04g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053628.1); similar to H0404F02.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66725.1); similar to OSJNBa0020J04.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD41303.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.107695111595150 -1.02336375900536 0.328349347734973 1 -0.105504702820289 3.65133332788098 -0.107695111595150 0.110745980029310
AT1G77220_at 5.78403974924986 6.11406419664535 5.88783669119651 5.73280405007924 6.31483762885866 5.9875715748704 5.62792619155272 5.33191421252552 4.92675800122722 4.90475117217007 4.8040208332578 5.11700726816835 4.82790853224842 5.23194559701309 4.96109006044656 4.65116402038519 5.12864575284485 4.89673559606603 5.2051434933326 0.187734396831908 0.181264097914396 0.182625364300131 0.188618265725538 0.184193556653510 0.183144400708350 0.186301683134007 0.180461249840718 0.193065177199839 0.1765993944572 0.181881071426611 0.181207416136576 0.176943125217452 0.185300521701482 0.185739317275888 0.1765993944572 0.179191366797359 0.194554255126589 0.183802440976384 1 0|1 /|+ 29019813 29020376 29020082.9 29017611 29020697 + gene protein_coding_gene FALSE TRUE AT1G77220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38360.2); similar to MAP kinase activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61807.1); similar to Os05g0516900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056049.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.103186775367499 1.02302931123937 0.328500460158025 1 -0.105818684994902 10.8298904184375 0.103186775367499 0.0990618796165927
AT2G27130_at 4.71130839951319 5.18964178319421 4.50144520125539 4.66421893778534 5.24838353633124 5.60186193691226 6.76351011870365 7.03180989581427 5.669087951113 5.87601930900072 7.13760051146408 7.02788654586139 6.7682569401667 7.00029067629922 7.26846597261624 6.44112549238254 6.75544589827105 6.09684931273338 5.47106915985038 0.238990110987685 0.233944091430031 0.245860543028569 0.239633562416258 0.232365367592768 0.240802421904156 0.232365367592768 0.233096166771564 0.236490314439111 0.236302473861878 0.232365367592768 0.233983562206159 0.232365367592768 0.247418892164284 0.233467388440561 0.232365367592768 0.242501895792465 0.232365367592768 0.248115650539898 2 2|0 +|/ 11602557 11603442 11602754.2 11602370 11603620 + gene protein_coding_gene FALSE TRUE AT2G27130.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Identical to Xylogen-like protein 11 precursor (XYP11) [Arabidopsis Thaliana] (GB:Q9ZVC7;GB:Q8L963); similar to lipid binding [Arabidopsis thaliana] (TAIR:AT3G43720.2); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE89509.1); similar to Os05g0489200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055891.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.109920607917177 1.02302646658814 0.328501745668257 1 -0.105821355218866 11.7060469638782 0.109920607917177 0.116375866574039
AT2G43230_at 1.07500382735978 0.667200406507422 0.842119751396861 0.905532415349846 0.899943859367543 1.12547694415332 0.740252869632613 0.868923502987152 1.93866784963539 0.989072581041492 1.15482105967996 0.850355487439488 1.24119497744250 1.01245375449724 1.01537478908709 1.31186819052669 1.20584871384375 1.46343420845304 1.44737995574158 0.210582884502995 0.217076037186179 0.213979982377656 0.217929468329888 0.223465538580764 0.212568232833191 0.22801568414283 0.216935301114695 0.218256629415443 0.213651502157447 0.231968515034897 0.217502217609634 0.213735890118620 0.223599775629326 0.210582884502995 0.214906356576413 0.214949003446742 0.228888963176898 0.217530470629998 2 2|0 +|/ 17974696 17975480 17975089.2 17973384 17975803 + gene protein_coding_gene FALSE TRUE AT2G43230.1 serine/threonine protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT3G59350.3); similar to protein kinase Pti1 [Glycine max] (GB:AAO92595.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.0980157367865586 -1.02280390414214 0.328602334154499 1 -0.106030252004834 2.19820287697467 -0.0980157367865586 0.0843800947942908
AT3G44510_at 1.22341606283802 1.22718243567126 1.32470771844297 1.44081205962307 0.647008977424458 0.91586345130358 1.15938753791777 1.25453868634753 1.19356900419009 1.33407356449799 1.08524657451376 1.12979705084458 1.31154166048827 1.08845179796993 1.71677198921823 1.32373194805462 1.46173927993625 1.33092286566362 1.52362240007376 0.210178734499688 0.228546789122854 0.217826421196094 0.216822238486287 0.210178734499688 0.213044525383976 0.217458998524781 0.216453817138190 0.213885837856883 0.219491152122951 0.211630049797337 0.224659461759334 0.218335667364906 0.213691023924701 0.219973559776745 0.210966842046464 0.232282496836305 0.217369763745530 0.214507670234468 3 3|0 -|/ 16119264 16120296 16119640.2 16119094 16120345 - gene protein_coding_gene FALSE TRUE AT3G44510.1 similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G08310.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93175.1); contains domain no description (G3D.3.40.50.1820); contains domain E set domains (SSF81296) -0.0892146947064583 -1.02268342681933 0.32865679414869 1 -0.106143316471027 2.47733814224113 -0.0892146947064583 0.0532915291145607
AT2G22090_at 5.70282840216469 6.34908004725477 5.69703141830272 5.89415795397547 6.7111821254554 6.31834314974627 5.44072874062685 6.34531706208179 5.71549695916488 5.75934526612825 5.65137559178914 5.51049895724678 5.84747540351927 5.85674528041462 5.86334616992797 5.98147555775356 5.81657254231745 5.3995574752503 5.41876243451126 0.247733816355546 0.245855029293969 0.255080441487788 0.246054362908101 0.246499880078354 0.252861945620593 0.246704828243882 0.248298439512843 0.249222607316423 0.245361307232832 0.241996633166969 0.241996633166969 0.261369458976781 0.254616192257768 0.252097912301577 0.241996633166969 0.250121674117598 0.244150210346530 0.242809963075075 2 2 - 9396505 9396997 9396749.182 9395340 9397587 - gene protein_coding_gene FALSE TRUE AT2G22090.1|AT2G22090.2 UBA1A; AU-specific RNA binding / RNA binding|UBA1A; RNA binding encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G19380.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71267.1); similar to RNA-binding protein AKIP1 [Vicia faba] (GB:AAM73765.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.152684708923599 1.02246938294396 0.328753566008792 1 -0.106344163791365 11.7433748252238 0.152684708923599 0.206878331720173
AT2G44440_at 3.77722372501829 3.83910559379217 3.73418177118216 3.37837645189363 3.70542997835741 3.87216036972557 3.88309852816469 4.32486002602301 3.9211043082038 3.7935191113909 4.25257982931316 4.1620775809903 4.66130250065865 4.1449208116669 4.12481817620282 4.10804090393278 3.60611446601145 4.07056488964709 4.48589513660227 0.208510329613139 0.209009608371140 0.209669826239741 0.201658009105018 0.199735787966304 0.208680733251567 0.200844718218013 0.213007809771337 0.201320016786198 0.210291871728043 0.203796761546214 0.209633252551374 0.217758724507319 0.200441986046644 0.20331670020643 0.199735787966304 0.207841789289185 0.209192470849717 0.209629956362576 2 2|0 -|/ 18344177 18345015 18344568.4 18343476 18346290 - gene protein_coding_gene FALSE TRUE AT2G44440.1 emsy N terminus domain-containing protein / ENT domain-containing protein similar to emsy N terminus domain-containing protein / ENT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G13020.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAL87186.1); similar to Os08g0328300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061559.1); similar to Os09g0279000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062755.1); contains InterPro domain ENT; (InterPro:IPR005491) -0.104535974694637 -1.02228701635495 0.328836032826748 1 -0.106515259945414 7.91837551228723 -0.104535974694637 0.102873543252355
AT2G28550_at 8.09514073044216 7.93966342551244 7.4058941498979 7.10562813837075 8.73617932194599 7.93143161887854 8.31835502491224 7.9337376172287 7.22550258763369 8.24292621494384 8.67003141221673 9.02363285127102 8.60950469449668 8.38432026940637 7.75329982617588 8.18276252890808 7.95364662022581 8.02714417494954 7.88761350250438 0.205086235374049 0.204553119867456 0.219936122773954 0.205451894132903 0.220528604825923 0.210558466117686 0.216149190915009 0.212272798641263 0.211711207277604 0.195837258335185 0.200444322106518 0.203797431167974 0.198343024192534 0.207864862393168 0.210450656552042 0.195837258335185 0.210499393540714 0.207530987853965 0.196660688635609 2 2 - 12233273 12234201 12233597.273 12233028 12235620 - gene protein_coding_gene FALSE TRUE AT2G28550.1|AT2G28550.2 TOE1 (TARGET OF EAT1 1); DNA binding / transcription factor similar to TOE2 (TARGET OF EAT1 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60120.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE87891.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.131627234964185 1.02214588638922 0.328899862811314 1 -0.106647650952738 15.9886988695154 0.131627234964185 0.165072950161356
AT1G05940_at 7.99686292805346 7.93669204271868 8.45375718300552 8.40877031945791 8.30421732797143 8.00818369655561 8.15876867729864 8.14435120239484 7.59787539427119 7.95514870586283 7.33559360136407 7.4656134184712 7.8185521441234 7.74347393906133 7.36816165926361 7.87667853260509 8.23261029580497 7.94853898569567 7.78716738231598 0.141831120400740 0.135699659001424 0.148561825734559 0.135697550551040 0.136349471299437 0.140313698956134 0.138872136965635 0.140228932358240 0.157850169185795 0.135197182505903 0.136039104428491 0.130911158618891 0.141475205203635 0.139442564673852 0.150489992968445 0.133821872766214 0.136149336358868 0.143804412328537 0.136819407686339 1 1 - 1801430 1802455 1801924.545 1801161 1803983 - gene protein_coding_gene FALSE TRUE AT1G05940.1 CAT9 (CATIONIC AMINO ACID TRANSPORTER 9); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g05940) similar to CAT4 (CATIONIC AMINO ACID TRANSPORTER 4), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT3G03720.1); similar to putative protein [Oryza sativa] (GB:CAC39065.1); similar to Os02g0655700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047620.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.0890762068482747 1.02208909145849 0.328925552500145 1 -0.106700924881574 15.928308746948 0.0890762068482747 0.0529128969349098
AT1G75360_at 2.80301097971705 2.82777268365284 2.40041210840875 2.77344404651901 2.76671849333068 3.01424983064301 2.69149995732761 2.80654106330471 2.99945823964086 2.45372159078562 2.45924295436988 2.13683179659218 2.41125902721519 2.32913432138379 2.67734585553463 2.48786201297292 2.32228284054297 2.65563892461371 2.30027108381818 0.220214837540943 0.214222428253875 0.217247396700095 0.217102918901737 0.221346427589939 0.224303889584532 0.218451955582916 0.216037044955637 0.226359239737695 0.221171524833568 0.216387883574607 0.224453443892753 0.220029626853929 0.225878479306154 0.231909310240001 0.214539421146316 0.224106453548072 0.220913629167259 0.219161898681251 1 1 + 28278958 28279604 28279212.1 28278249 28279651 + gene protein_coding_gene FALSE TRUE AT1G75360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27670.1) -0.0965169863517922 -1.02164160881365 0.329128011440781 1 -0.107120581858919 5.27017282273031 -0.0965169863517922 0.0801062146506827
AT4G34500_at 5.91353872543952 5.99238986365546 5.605312444761 5.46688397457609 5.46168523338764 6.20552337121867 4.87716714833343 5.82723723202151 4.78845993216396 5.29933618731145 5.75718426985342 5.36298393919077 5.20264866405431 5.60894500824188 5.17241426486854 5.31137795410196 5.03388708181213 5.0212521685512 5.0087451028773 0.246979266279086 0.234042168272639 0.237367790297205 0.242150856949457 0.240143342873902 0.247726411266407 0.239184363376014 0.234042168272639 0.248779111708018 0.244576601119173 0.240838858538684 0.236583517567712 0.243043827805574 0.241780712393161 0.234804786839363 0.234042168272639 0.239904105265124 0.24574436591516 0.243643468065180 4 4|0 -|/ 16487956 16488645 16488275.333 16487759 16490959 - gene protein_coding_gene FALSE TRUE AT4G34500.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01540.2); similar to Protein tyrosine kinase, putative [Medicago truncatula] (GB:ABE87947.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.154462137503372 1.02129447211699 0.329285133416072 1 -0.107446029993049 10.8392257873168 0.154462137503372 0.210623116024690
AT1G32580_at 4.55082951601575 5.10914766264769 4.40376697393667 5.01577694961101 4.60683698199525 4.46926995677798 4.87119440909189 5.04262138661881 4.12187002412442 4.55446309448071 4.41125217022255 4.30679501075519 4.40451394975564 4.63066047118589 4.32662527474601 4.74312927681988 4.78264829853753 4.37649360062158 4.75011150705616 0.197425304102677 0.20159477092569 0.200868987623787 0.195450110669035 0.196400837262851 0.196374893377723 0.191186063308507 0.195940973960981 0.209540975398761 0.200216900368307 0.190905992901351 0.191839993103643 0.195188376257997 0.197077812093734 0.191380021508397 0.196513189984258 0.203877819364453 0.212751226960651 0.193684933349653 1 1|0 +|/ 11784228 11785359 11784647.6 11784037 11785617 + gene protein_coding_gene FALSE TRUE AT1G32580.1 plastid developmental protein DAG, putative similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT2G35240.1); similar to putative plastid protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22214.1); similar to OSJNBa0041A02.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD41861.2); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.123626156659935 -1.02127638997753 0.329293319325327 1 -0.107462979929940 9.2453036288207 -0.123626156659935 0.148321805524354
AT3G53160_at 1.76514519189812 1.39074436060772 1.78334557689937 1.48143076126963 1.10043943402205 1.76866773135536 1.48399560813678 1.56699823863822 1.27595986052506 1.42484061442398 1.61995985714613 1.25943904311543 1.63699234302939 1.37578157362494 1.56152329422293 1.51893032133050 1.54364806672258 1.8158497732323 1.14127450908128 0.191955742595366 0.187266695511554 0.189940496187792 0.189026002503598 0.183748116071845 0.180412526664434 0.180412526664434 0.183595623371599 0.185379691798755 0.188906461258248 0.180643873095347 0.190802059549453 0.189697283446495 0.186660051412821 0.188653747077614 0.184917526235831 0.184720771629847 0.187174430384655 0.203804722827994 3 3 - 19713498 19714029 19713803.545 19713434 19714954 - gene protein_coding_gene FALSE TRUE AT3G53160.1 UGT73C7 (UDP-glucosyl transferase 73C7); UDP-glycosyltransferase/ transferase, transferring glycosyl groups similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36770.1); similar to glucosyltransferase-14 [Vigna angularis] (GB:BAB86932.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.121286949387988 1.02125527275205 0.329302879429628 1 -0.107482774604526 2.95369946055164 0.121286949387988 0.143201770463591
AT4G05310_at 1.70083900819229 1.36045188728502 1.44300896128650 1.58126909595961 1.14128606362292 1.89343737850039 1.32042499158584 1.51587814253557 2.01038453683076 2.03666137688643 1.56085285902504 1.88613905958398 1.34755857201866 1.72625747829159 1.33636272426163 1.24647412942403 1.94785880032572 2.03723662407451 1.72522546390714 0.198527356944898 0.191145640598948 0.189906051817847 0.191440590271199 0.192111537497173 0.190723332426817 0.193887723001565 0.196714031011575 0.194418926773502 0.187826176913174 0.192727252493709 0.193070593076969 0.193356460701229 0.187826176913174 0.187826176913174 0.195403926683524 0.211650304255195 0.202308133263898 0.190308563587679 4 4 + 2715462 2715956 2715718.273 2714763 2716010 + gene protein_coding_gene FALSE TRUE AT4G05310.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05270.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.123823030444892 -1.02124468484940 0.329307672819111 1 -0.107492699272349 3.27466593616289 -0.123823030444892 0.148757852589348
AT1G24050_at 9.47683559014748 9.35604761538733 9.6110534753359 9.37980824504467 9.6921389587488 9.40466867834752 9.34256114825258 9.31631117242085 9.03213772519152 8.97303493911274 9.16907351180583 9.0390506344922 8.94462470200687 9.01011495998144 9.16707185046709 8.95528134076708 8.87647423444255 9.05382689953692 8.9667321393857 0.118753462920651 0.116449657709623 0.118461990521124 0.117632582252199 0.117697215194901 0.120578035524557 0.115144382249809 0.117354300835268 0.127346674317537 0.119744193078786 0.113275407064105 0.116282879683880 0.122758380928862 0.129100790806136 0.118729069855918 0.120455191981222 0.129637884627367 0.120799268688397 0.117720174305154 1 1|0 +|/ 8507067 8508403 8507760.8 8507009 8508853 + gene protein_coding_gene FALSE TRUE AT1G24050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70220.1); similar to hypothetical protein Afu6g08070 [Asper (GB:XP_750698.1); similar to Os02g0741900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048085.1); contains domain FAMILY NOT NAMED (PTHR13542); contains domain SUBFAMILY NOT NAMED (PTHR13542:SF2) 0.0926416449706708 1.02101634704304 0.329411059214747 1 -0.107706713499833 18.4562154610860 0.0926416449706708 0.0673341252659894
AT3G26750_at 2.32971932976412 3.10607038070511 2.70263853295070 3.13979787483420 3.64760337801426 3.2297968820173 3.09812643270241 2.59009690219898 2.59899361906113 2.79413260437701 2.83434562981672 2.94680683917215 2.73251901483287 2.66879288065917 2.70936081635795 2.65407808441274 2.77552528278537 2.84484977419267 3.24829545135018 0.211738856024905 0.208323004319048 0.208323004319048 0.210317589237577 0.209123931460433 0.210011214644324 0.211559692497532 0.216427539184463 0.219369664113509 0.215323442480539 0.213636582719115 0.214667019304368 0.209496784552676 0.219484235394817 0.212939698327584 0.208323004319048 0.219349207140962 0.208323004319048 0.213365201017411 3 3 - 9841386 9841889 9841629.909 9841213 9843316 - gene protein_coding_gene FALSE TRUE AT3G26750.1 similar to hypothetical protein MtrDRAFT_AC125480g17v1 [Medicago truncatula] (GB:ABE84077.1) 0.144633402147031 1.02096250763997 0.329435440025716 1 -0.107757169912389 5.80611055508579 0.144633402147031 0.191652513783769
AT4G32030_at 6.07764243618603 6.45852340145248 5.41744600477072 5.9886278672371 6.23781293803358 6.77620803034418 5.8190832660547 6.47302016379321 4.99810485154906 5.82909004359733 6.01212285582236 5.72206771932057 6.55436564989366 5.79818629512966 5.91221869766671 6.19452360826631 6.15177311290656 5.29658399459687 5.87369724252258 0.218857331428251 0.219307621375698 0.223038016423538 0.219069926139792 0.218429152143971 0.232747809540972 0.224985385379497 0.220574637584401 0.238821806634713 0.225048304257388 0.220347824066943 0.228443232544019 0.217350138121975 0.224643065124724 0.216332683764813 0.216332683764813 0.218379025252770 0.229561477496353 0.218291312470813 4 4 + 15491071 15492965 15491733.636 15490746 15493429 + gene protein_coding_gene FALSE TRUE AT4G32030.1|AT4G32030.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80610.1); similar to Os02g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046100.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80610.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15800.1); contains domain Multiheme cytochromes (SSF48695) 0.143111294517736 1.02081878657722 0.329500529681344 1 -0.107891849711075 11.917142657279 0.143111294517736 0.188686871139023
AT4G31100_at 1.50999619653475 1.46445346806546 1.62264191039388 1.33747059524480 1.48926773771715 1.50389236065362 1.56321570670568 1.28580612962045 1.49673670090608 1.61384626378433 1.90053980552847 1.53450364947378 1.32012692257616 1.66432810639865 1.54430388155857 1.43421420609815 1.60963993108555 1.64031723206563 1.17065450259036 0.148305404925052 0.144224718059498 0.141489870787934 0.142498003671541 0.148155690007632 0.145084286963818 0.14478682404014 0.150426782875227 0.146806583994779 0.155661626435328 0.141489870787934 0.145127042081721 0.144774742797639 0.145081447210571 0.141489870787934 0.145601316537753 0.147750666809698 0.145763100104146 0.147913509587713 4 4 + 15125839 15126220 15126054.545 15123787 15126537 + gene protein_coding_gene FALSE TRUE AT4G31100.1 wall-associated kinase, putative Identical to Wall-associated receptor kinase-like 17 precursor (EC 2.7.11.-) (WAKL17) [Arabidopsis Thaliana] (GB:Q9M092); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G17910.1); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G19390.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31110.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.0931839184293207 1.02075044573208 0.329531483821252 1 -0.107955885944923 2.97613094942116 0.0931839184293207 0.0693443603469756
AT2G05710_at 11.0806636094 11.2189565913430 11.5644947068784 11.5934422802771 10.8218851575484 10.7013686616314 11.2229926849123 11.2691881254464 10.2673236829028 10.6683606012271 10.5635909213466 10.5890833618277 10.4878205124884 10.439427459961 10.3923404555367 10.5332506501671 10.7970232703014 10.9715536157548 10.2603761996262 0.0779725876718514 0.07717465271365 0.0802029664680195 0.0786317742352076 0.078020402105969 0.08053364461468 0.0787885103300991 0.0782306396685781 0.0892686411862998 0.0801299734126621 0.079731181903101 0.0785463902963481 0.078483167754934 0.0784870423518723 0.0819067258954222 0.0780888664837421 0.078573794959547 0.0854437571601822 0.0802378823326848 2 2|0 +|/ 2145507 2146163 2145888.333 2141396 2146675 + gene protein_coding_gene FALSE TRUE AT2G05710.1 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Identical to Aconitate hydratase 2, mitochondrial precursor (EC 4.2.1.3) (Citrate hydro-lyase 2) (Aconitase 2) (ACO2) [Arabidopsis Thaliana] (GB:Q9SIB9;GB:Q8L784); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:P49608); similar to Putative aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:Q6YZX6); similar to aconitase [Lycopersicon pennellii] (GB:AAP30039.1); contains InterPro domain Aconitase/homoaconitase; (InterPro:IPR012084); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573); contains InterPro domain Aconitate hydratase 1; (InterPro:IPR006249) 0.0852109509063324 1.02070918021340 0.329550175569091 1 -0.107994550571912 21.6818480316005 0.0852109509063324 0.0331168734846149
AT2G40830_at 7.83212126533476 7.56382504335006 7.87154073629503 7.93732997199345 7.8998659917938 7.63483622063975 7.47470018222834 7.68977959820075 7.36229310815028 7.23851780708303 7.22066239648646 7.08817193731174 7.48387498854063 7.57827749904897 6.8845330684808 7.52938689394112 7.21863791473609 7.53362038501812 7.36715975280208 0.161645582750098 0.153754733772537 0.154239980301709 0.158486931527785 0.152487417038166 0.158535672286180 0.150989656937202 0.154628813121413 0.160208107001223 0.154013269129693 0.160265434145815 0.160544987169821 0.158452823079933 0.156312940359579 0.157647207646802 0.155961227167827 0.158744110404531 0.150022134770709 0.152220861357247 2 2 + 17051113 17051682 17051322.727 17049730 17051937 + gene protein_coding_gene FALSE TRUE AT2G40830.1|AT2G40830.2|AT2G40830.3 RHC1A (RING-H2 finger C1A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHC1a. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G56580.3); similar to Os03g0351800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050120.1); similar to putative ring finger protein 126 isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68141.1); similar to Os01g0802000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044543.1); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0951377270011966 1.02064212379988 0.329580551308018 1 -0.108057377834559 15.0579011386248 0.0951377270011966 0.0759887385765978
AT1G69630_at 1.01762383192529 1.26729089085313 1.55723732366156 1.49394087034933 1.31796960184777 1.48113824439136 1.13506315353234 1.2696643310163 1.33111075834142 1.60018762939331 1.30684004512719 1.26030802684008 1.61764769774409 1.50389101302754 1.35576765177968 1.38240735229878 1.38210781922374 1.50615222291660 1.64204789863698 0.184563922430464 0.18969126574368 0.182920028961693 0.179295560582939 0.181544663274197 0.180716788560083 0.178422568555986 0.177312898499518 0.181474207187107 0.187657464552544 0.180900551557571 0.185283043315572 0.181233953100474 0.187617213425615 0.190548560816563 0.181533767938135 0.189718762537046 0.180767246368341 0.187298272305034 1 1|0 -|/ 26195303 26196034 26195776.333 26195303 26196837 - gene protein_coding_gene FALSE TRUE AT1G69630.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G78750.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE78248.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0900512123632746 1.02034855750070 0.329713557656157 1 -0.108332389900162 2.78691052631894 0.0900512123632746 0.0576772175821575
AT4G33730_at 2.25433865435789 2.03620501201845 1.87942454764371 2.12598328039274 2.24261943758894 2.18845752139076 2.27593714415890 1.97272057337809 2.77735478579958 2.59439252362647 2.70481034836522 2.65059631344852 2.43853838725282 2.29966680740308 2.55340518351902 2.71344527228016 2.76172857704194 2.84278862850171 2.98730551160206 0.225689693522238 0.229603177286534 0.239531813611708 0.228609371217553 0.233099621927571 0.237978029640068 0.229287251467348 0.232850680885426 0.226078480190261 0.232416377527593 0.228500349909561 0.234915149327253 0.226398463454815 0.22817440046478 0.236061031665484 0.234538885008845 0.233653653368298 0.22592868003263 0.234053061296405 4 4 + 16185156 16185575 16185359.818 16185101 16185619 + gene protein_coding_gene FALSE TRUE AT4G33730.1 pathogenesis-related protein, putative similar to PR1 (PATHOGENESIS-RELATED GENE 1) [Arabidopsis thaliana] (TAIR:AT2G14610.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.0957038249202214 -1.01999355934097 0.329874450036096 1 -0.108664865386366 4.82544746140082 -0.0957038249202214 0.0780181587877175
AT3G18100_at 2.58543796695779 2.66721799770221 2.82626548195895 2.78071492787920 2.8607301568291 2.70577119044005 2.55527773481586 2.50652320283238 2.36443736308123 2.63143598920680 2.5247280162434 2.03806293164408 2.12757662781104 1.96335113946704 1.91879631068205 2.32086872324215 2.50040629149294 1.99240878476910 2.67852290421593 0.178138102930229 0.178159388754944 0.173531010994178 0.170968287322176 0.170297901131698 0.182484237225222 0.178363839994364 0.183703924703841 0.181541299572574 0.172387217575400 0.173396945396883 0.175198350230027 0.173515839403169 0.174329889257223 0.182914514735592 0.170128559725421 0.175520120345035 0.181669872453265 0.172244181573953 3 3 + 6203955 6204543 6204128.727 6200584 6204589 + gene protein_coding_gene FALSE TRUE AT3G18100.1|AT3G18100.2 MYB4R1 (myb domain protein 4R1); transcription factor Member of the R2R3 transcription factor gene family. similar to MYB3R-3 (myb domain protein 3R-3) [Arabidopsis thaliana] (TAIR:AT3G09370.2); similar to Os07g0139500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058860.1); similar to putative myb transcription factor [Dictyostelium discoideum AX4] (GB:XP_638274.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to MYB3R-3 (myb domain protein 3R-3) [Arabidopsis thaliana] (TAIR:AT3G09370.2); similar to Os07g0139500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058860.1); similar to putative myb transcription factor [Dictyostelium discoideum AX4] (GB:XP_638274.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0850505093162885 -1.01997147314995 0.329884461865487 1 -0.108685547227554 5.05169580176209 -0.0850505093162885 0.0324458398349449
AT3G15720_at 2.28198671282515 2.03168634087925 1.77718294235341 1.78756270492518 1.50248122588751 1.48128839457354 1.53843677725721 1.61021243432256 1.64300358459546 2.10729731119215 2.08083744277596 2.1432300850557 1.50640332102019 2.46619511963918 3.29299994137901 1.99550267192082 1.63554785015664 2.48141336859891 1.64166533771727 0.19607649696576 0.194926548629044 0.189349548774134 0.204389899282715 0.203078284120203 0.188108044133511 0.195278569782891 0.191297125809744 0.199325688487847 0.187403149699176 0.193890317897468 0.200374051892396 0.191518039695508 0.197756147836693 0.192253635913500 0.189348147785930 0.192872669705059 0.187879631696345 0.189548199314777 3 0|3 /|- 5325353 5325857 5325573.778 5325297 5327646 - gene protein_coding_gene FALSE TRUE AT3G15720.1|AT3G15720.2 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein Identical to Putative polygalacturonase At3g15720 precursor (EC 3.2.1.15) (PG) (Pectinase) [Arabidopsis Thaliana] (GB:Q9LW07); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G27530.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABC75354.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334)|Identical to Putative polygalacturonase At3g15720 precursor (EC 3.2.1.15) (PG) (Pectinase) [Arabidopsis Thaliana] (GB:Q9LW07); similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G27530.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABC75354.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.0872461989236049 1.01983646157346 0.329945668471909 1 -0.108811966193602 3.75014884307961 0.0872461989236049 0.045246066593718
AT2G26120_at 3.02821400243705 2.30511971567927 3.01102411681980 2.71611818832256 2.53480415741133 2.83153734754753 3.01810795733282 2.70211896263515 3.15591213108433 2.79320212279232 3.32841529375633 2.74682099967778 3.08165415069529 3.36249098921979 3.42649371139566 3.06325174542813 3.24921552244845 3.20431776294613 2.87139445362429 0.205383233284907 0.215980332500272 0.212816333277265 0.215600757638463 0.200697150777645 0.204956300308674 0.210184641721027 0.210365506255950 0.205877421319415 0.209629793638107 0.200281054109678 0.201599107987255 0.205881013788428 0.200281054109678 0.209094318080276 0.208868172024975 0.211095751813724 0.200281054109678 0.207117929518414 2 2|0 +|/ 11130522 11130836 11130649.5 11130508 11130895 + gene protein_coding_gene FALSE TRUE AT2G26120.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31590.1) 0.126321872891599 1.01963859199000 0.330035386516897 1 -0.108997218117818 5.82988160157965 0.126321872891599 0.154565474417772
AT4G09160_at 3.51335480159141 3.26743824450665 2.82870225897719 2.85326917194155 2.63866956689297 3.40912207962641 2.26172041763546 3.32077855710368 4.40119842999582 3.34315871488048 4.83083095446978 4.7787948765763 4.55317189811321 4.04896490844416 4.48373463574939 4.26791294888131 3.69168612656583 4.50814290915791 3.97795892937153 0.248114817902685 0.248330670436951 0.265651527540931 0.256353030749837 0.241290573406197 0.259858979175727 0.241290573406197 0.241290573406197 0.256782631832019 0.241290573406197 0.26047209511203 0.246567595575809 0.253263978683941 0.250460867176763 0.245124305463478 0.249312761513634 0.241290573406197 0.251310550185984 0.250255625117777 4 4|0 +|/ 5841410 5842084 5841760.667 5839680 5842391 + gene protein_coding_gene FALSE TRUE AT4G09160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-5 (PATL5) [Arabidopsis Thaliana] (GB:Q9M0R2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G72160.1); similar to putative cytosolic factor [Trifolium pratense] (GB:BAE71201.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.164791989989509 1.01961934537236 0.330044114282902 1 -0.109015235868455 7.16305368661475 0.164791989989509 0.230642312975046
AT4G35780_at 6.25937508833983 6.43596415575606 6.51433104345207 6.0383669307077 6.81277566012818 6.56939695307031 6.4656772251652 6.27766131981226 5.95636474906937 6.49542894570607 6.20174751702909 5.97259535994607 6.4041422176203 6.31281419351762 5.35891808130178 6.0204746755074 6.01288416863699 5.56591574373971 6.48906050960253 0.188860150444997 0.175842509037653 0.179193743863838 0.182898724108860 0.170027578291379 0.183582647819699 0.172099935758971 0.167415072131606 0.187363350633793 0.171682116372724 0.169367744711167 0.169644674163094 0.176520491174634 0.172219974261217 0.179788092564419 0.16816783712491 0.190677491845597 0.171943171929217 0.174475536886200 4 4|0 -|/ 16946751 16947810 16947224.5 16946526 16950599 - gene protein_coding_gene FALSE TRUE AT4G35780.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G38470.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06436.1); similar to Protein kinase; Amino acid-binding ACT [Medicago truncatula] (GB:ABE89440.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06437.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.104191686946195 -1.01949472063900 0.330100632007059 1 -0.109131896821492 12.5690958284481 -0.104191686946195 0.102717631981829
AT4G16840_at 4.97104677111905 5.11185633942379 4.65599056981009 4.66209102583177 5.0033093093158 5.29645349994144 4.5003086785606 4.16330321725052 4.49684191917067 3.73557386879267 3.81736171351792 3.76076501692729 3.60756217964608 3.63522098001934 3.12475781858938 3.53686761190614 4.18118743870173 3.45361696641261 3.91975318639755 0.260736131933694 0.266078225042316 0.269410609924706 0.259884300461312 0.268523156567462 0.263273070034670 0.261947129392948 0.262010978961110 0.256091639793228 0.267577234410624 0.255917836561404 0.258990978120390 0.262248554005731 0.257720425876244 0.268339803042633 0.260690835629702 0.265463084229016 0.255917836561404 0.255917836561404 4 4|0 +|/ 9474933 9475109 9475007.5 9474904 9475542 + gene protein_coding_gene FALSE TRUE AT4G16840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61630.1) -0.096611588051141 -1.01944230398639 0.330124405268741 1 -0.109180960482021 8.64074015499098 -0.096611588051141 0.081053666582326
AT3G47110_at 1.63582118536048 1.67958945434710 2.08159905378147 1.30865321629806 1.43405047851017 1.58387569992731 1.56077416823461 1.64720853005052 2.05894136275701 1.85723671518291 2.01166789881456 1.75525359278607 1.82642065040015 1.80348253705938 2.18921898540774 1.89934576718180 1.82400831921412 1.47750154131465 2.25274690979195 0.178456740773788 0.178408225149806 0.178666511800435 0.184158211949592 0.185014693022793 0.184017135649600 0.178602455600963 0.181513757446697 0.180994526132724 0.179740795921949 0.185715415655684 0.180459449318699 0.180702024722646 0.182017868842749 0.190349321520668 0.180004849914197 0.183511345840494 0.185408270812645 0.186797761661698 3 3 - 17358179 17358760 17358502.818 17358088 17361281 - gene protein_coding_gene FALSE TRUE AT3G47110.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to EFR (EF-TU RECEPTOR), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G20480.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47580.1); similar to putative receptor kinase [Hordeum vulgare] (GB:AAP31049.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91397.1); similar to Leucine Rich Repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.118374820045286 -1.01903812705679 0.330307759841088 1 -0.109559214204634 3.56878184369685 -0.118374820045286 0.137279305715752
AT2G22160_at 1.20101812797116 1.47108175364975 1.26022136940362 1.75487714372771 0.923167345812473 1.43163292786358 0.663243864236321 1.11362062367468 1.42178493736035 1.70070523175551 1.58314806417169 1.49615670994098 1.39059614074166 1.46242297853616 1.76091104622246 1.54478185546041 1.46487918453341 1.42596586186953 1.36447356855142 0.220638896803670 0.219911283273811 0.217650835704362 0.231941530910130 0.220487289563047 0.220515439381463 0.220233682228796 0.221180659787216 0.229986129935391 0.224060227314137 0.216562203992984 0.222703374434236 0.221357360494163 0.216014579735864 0.219295898787737 0.222277211277477 0.228337753536380 0.222719149622019 0.221325853943263 2 2 - 9432231 9432516 9432351.091 9432223 9432540 - gene protein_coding_gene FALSE TRUE AT2G22160.1 cysteine endopeptidase-related similar to cysteine proteinase, putative [Arabidopsis thaliana] (TAIR:AT3G48350.1); similar to pre-pro-TPE4A protein [Pisum sativum] (GB:CAA06243.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.125343377640488 1.01860930821879 0.330502375513419 1 -0.109960396174808 2.73323904924589 0.125343377640488 0.152739262966844
AT4G35190_at 2.21530933493059 2.21284880974335 2.41203031942140 2.2945851391537 1.55857532033337 2.21432774750517 2.05127272831450 2.41066956988758 2.63370251345326 2.17839419805435 2.14444833517989 2.65427661288869 2.4286479058521 2.03622435982805 2.26836654468396 2.04776280997884 2.49963242605344 2.18543835513631 2.42269732077102 0.179216703586775 0.181059635832371 0.182833001507907 0.181852894106545 0.1767138372948 0.176472899096508 0.179283313681683 0.174874248859919 0.184104340956332 0.182407357146530 0.179352079014217 0.174861544500128 0.182560181623176 0.180842567177743 0.189151818344808 0.179638036878939 0.176704629273412 0.179299188174573 0.187229949010435 4 4|0 +|/ 16746969 16748070 16747582.556 16746604 16748271 + gene protein_coding_gene FALSE TRUE AT4G35190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37210.1); similar to Conserved hypothetical protein 730 [Medicago truncatula] (GB:ABD32794.1); contains InterPro domain Conserved hypothetical protein 730; (InterPro:IPR005269) -0.115571910587492 -1.01857829198733 0.33051645524519 1 -0.109989408128614 4.51855121089106 -0.115571910587492 0.130994123002587
AT2G45060_at 5.19768028046597 4.98468978152737 5.09568125337031 5.46820750224627 5.131211513882 4.53014366516 5.53707090149204 5.59374062751374 4.15977353039353 4.64610211732119 5.21679282431152 5.08597338038817 4.85809122321596 5.00512758908249 5.04994728440278 4.71332528107768 4.33578777797427 4.18408633480607 4.11092035203816 0.233768505074616 0.235604473957776 0.231948642311138 0.234340589965398 0.233369643377608 0.228828475203372 0.237554459130930 0.244587373236524 0.241900282738347 0.232438409112758 0.234983778026359 0.240468843512646 0.23019061670972 0.226692530614073 0.226852721583555 0.227730142805046 0.247865815875502 0.243517463570829 0.234085754509338 2 2|0 -|/ 18591752 18593502 18592785.625 18591427 18593851 - gene protein_coding_gene FALSE TRUE AT2G45060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26410.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90926.1); similar to Os02g0104800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045615.1) 0.114279190618971 1.01783429269775 0.330854324543766 1 -0.110685114914297 9.74817325495304 0.114279190618971 0.128181389182472
ATCG00120_at 12.7829357355964 13.6752081001680 12.9666314836570 13.4189501784709 12.2894458165338 12.7564604777444 12.7628306722777 13.4743021216249 13.3880587315547 13.5237905307157 14.2783010413859 14.4995530786446 14.0394485884051 13.9858755006136 14.0493540464533 14.1616839916656 13.605919156527 13.6501898346506 13.2654488124254 0.093042465692757 0.0914755798330378 0.0967743886809316 0.0905027760150646 0.092747795611554 0.0989300291403763 0.0927780347285044 0.0905027760150646 0.106611090697477 0.0905027760150646 0.0933949623392767 0.0905027760150646 0.0910907595481382 0.0979739078285788 0.0931527221272214 0.0909219943196392 0.100505890533481 0.09632639701544 0.0905027760150646 C C - 9950 10502 10282.636 9938 11461 - gene protein_coding_gene FALSE TRUE ATCG00120.1 Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. Identical to ATP synthase subunit alpha (EC 3.6.3.14) (ATPase subunit alpha) (ATP synthase F1 sector subunit alpha) (atpA) [Arabidopsis Thaliana] (GB:P56757); similar to ATP synthase alpha chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT2G07698.1); similar to ATP synthase CF1 alpha subunit [Eucalyptus globulus subsp. globulus] (GB:YP_636284.1); similar to ATP synthase CF1 alpha chain [Populus alba] (GB:YP_665543.1); similar to ATP synthase CF1 alpha subunit [Morus indica] (GB:YP_762246.1); contains InterPro domain ATPase, F1 complex, alpha subunit; (InterPro:IPR005294); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; (InterPro:IPR004100); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding; (InterPro:IPR000194); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793) 0.162705397456362 1.01775919843927 0.330888440963928 1 -0.110755311908860 26.7289572464384 0.162705397456362 0.227291110885928
AT1G68660_at 10.974046913509 11.0606697770194 11.2907040101811 11.3572120208272 11.4019818865476 11.0071663686935 11.7313828132132 11.9122075816921 11.2214947854967 11.5020834878268 11.3926463196157 11.1722059061103 11.4774357863751 11.5207563415259 11.1177447259497 11.6372570383817 11.2809997715584 11.2889765124499 11.4653834939883 0.0566970421619727 0.0553030485474426 0.0606714130738191 0.0575331784477293 0.0581956697652723 0.0635644611630351 0.0579017668446529 0.0557559998538904 0.0600974031877677 0.055084532288641 0.056607337023269 0.055617249572597 0.055084532288641 0.0626669490237956 0.0601431949705283 0.0569718370604752 0.0608445582020931 0.0588293748557842 0.0565405815416506 1 1 - 25781721 25782707 25781978.091 25781514 25782824 - gene protein_coding_gene FALSE TRUE AT1G68660.1|AT1G68660.2 similar to Os08g0432500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061868.1); similar to ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium erythraeum IMS101] (GB:YP_720956.1); contains InterPro domain ATP-dependent Clp protease adaptor protein ClpS; (InterPro:IPR003769)|similar to Os08g0432500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061868.1); contains InterPro domain ATP-dependent Clp protease adaptor protein ClpS; (InterPro:IPR003769) -0.0953142443270911 -1.01758859225087 0.330965959513441 1 -0.110914776393208 22.7205831161353 -0.0953142443270911 0.0774897985382878
AT4G34460_at 8.48255639248152 8.86831563522942 8.80382082571214 8.94069201416396 9.21731707805839 8.913457617619 8.66769106992009 8.668531805609 9.13934325640506 8.7753272362967 8.9634887295023 8.67990119218877 8.83510416054968 9.04006398850036 8.5804264542233 8.9506740661073 8.61149691931135 8.87033072136611 8.8334652777519 0.0792908500595954 0.0758659306163055 0.0792384178861927 0.0818341859832694 0.0769328562844198 0.079810581575837 0.0778100754865745 0.0779559858158553 0.0881082379253669 0.0773518193882651 0.079717125928175 0.0756850056050821 0.0789289340152368 0.0802693296539821 0.0753578309342311 0.0767860191488353 0.085274195614549 0.0797086091131542 0.0769564635055021 4 4 - 16477736 16478380 16477919.364 16477110 16479510 - gene protein_coding_gene FALSE TRUE AT4G34460.1|AT4G34460.2|AT4G34460.3|AT4G34460.4 AGB1 (GTP BINDING PROTEIN BETA 1); nucleotide binding|AGB1 (GTP BINDING PROTEIN BETA 1) Encodes a putative heterotrimeric G-protein beta subunit involved in organ shape. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to G protein beta subunit 2 [Solanum tuberosum] (GB:AAL07488.1); similar to Guanine nucleotide-binding protein subunit beta (GB:P93563); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632)|Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632)|Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G25150.1); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632)|Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to Guanine nucleotide-binding protein subunit beta (GB:P93563); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632) 0.098719340114557 1.01674804871702 0.331348074266978 1 -0.111700109736839 17.6865383227425 0.098719340114557 0.0882197294118446
AT4G38640_at 7.1011023496566 7.18531155259543 7.1050529728344 7.43158030686 7.16887248266353 7.58770306269591 6.92808179572785 7.37660267547565 6.95209803780366 7.11840665457523 7.1679077704327 7.24261214066323 7.35109414094938 7.28016002949122 7.10961017149082 7.23710785053331 7.08685109310278 7.000512807122 7.34249377541843 0.174065689152213 0.173798385338787 0.177743850394160 0.180076173713302 0.176565604247368 0.170525752774919 0.160395894342221 0.170325946035384 0.177061482724557 0.167054554853294 0.166697941355621 0.172012492195999 0.166058576505172 0.168585793407546 0.168252983014297 0.160939776192046 0.172458523328800 0.174842515158126 0.169340038725852 4 4|0 -|/ 18059897 18060501 18060222.778 18059647 18062283 - gene protein_coding_gene FALSE TRUE AT4G38640.1 choline transporter-related similar to choline transporter-related [Arabidopsis thaliana] (TAIR:AT1G25500.2); similar to Choline transporter-like protein (ISS) [Ostreococcus tauri] (GB:CAL55455.1); contains InterPro domain Protein of unknown function DUF580; (InterPro:IPR007603); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) 0.111171728720161 1.01638509441857 0.331513175578121 1 -0.112039060716299 14.3966124780165 0.111171728720161 0.121175505753714
AT1G20670_at 5.34044204174841 5.93754018483705 5.20500699802816 5.47416670592317 6.32956598738494 6.48702071087915 6.33359060082973 5.98156400033876 6.06039804888438 6.01292798418695 5.7427111448846 5.91987782550102 5.55141670323357 5.69413959117289 6.1866673899627 6.07156251896807 6.27457218385759 5.73938269806083 6.2394722693556 0.225553981295553 0.223087562338200 0.222767634821138 0.220993698864249 0.223983984212115 0.226612731167635 0.224289396142402 0.225391372333197 0.221670201901008 0.232139807871133 0.223851883613086 0.220172421976299 0.220172421976299 0.225409360839861 0.225367918999355 0.220172421976299 0.22261417773723 0.246364802079279 0.228271837183865 1 1 - 7164530 7165093 7164793.091 7164527 7167923 - gene protein_coding_gene FALSE TRUE AT1G20670.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76380.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22713.1); similar to Os03g0130800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048857.1); similar to Os09g0550000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063862.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) -0.115534475119226 -1.01620345465556 0.331595823011336 1 -0.112208651129352 11.8870158326282 -0.115534475119226 0.131531546930209
AT3G53470_at 9.21239270752877 9.18774667772648 9.18936064307617 9.04366535514158 9.6088702002673 9.25219361522757 9.7555222812722 9.5957293443986 9.424814498529 9.43422668628885 9.4546328274397 9.46492140531396 9.41169849606817 9.4481870837467 9.31030398425768 9.50393821537422 9.31075913277713 9.19276188221603 9.37115781032053 0.113810879647578 0.10722052530329 0.114914810959713 0.117736359526023 0.111437105214888 0.115729407273852 0.10722052530329 0.113840238911935 0.120809936695569 0.108177522947485 0.113663684605504 0.109567497543413 0.120144489132647 0.115345044676365 0.119620254707990 0.107319014787852 0.117088701668089 0.113846757855838 0.110772147761241 3 3 + 19833792 19834216 19833976.545 19833722 19834471 + gene protein_coding_gene FALSE TRUE AT3G53470.1|AT3G53470.2 similar to Os03g0285100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049768.1) -0.0936206263084716 -1.01616747401488 0.331612196273919 1 -0.112242242015425 18.7542934581358 -0.0936206263084716 0.0723083835631328
AT1G23205_at 1.57309157745223 1.61807892352326 1.76684942206418 1.73477392804172 1.17143299954107 1.69669526529943 1.70150104886768 2.56933142015696 2.22001436821872 2.73169000150187 3.2402270150612 3.44821041134030 1.41239985330861 2.43130434836092 4.17659896436768 2.48563890388814 1.91403204787003 2.78133338588373 1.62143989202964 0.213872407126501 0.205184253756569 0.213224349019622 0.213878011403782 0.208398096564259 0.217424383981195 0.206723257942106 0.206710993761593 0.208859170542761 0.211659537694142 0.209508866383393 0.220639673393543 0.216061677016775 0.20650860835893 0.222208526441522 0.204500695997489 0.210848885826662 0.214606819561985 0.208780892229845 1 1 - 8234246 8234751 8234542.545 8233986 8234882 - gene protein_coding_gene FALSE TRUE AT1G23205.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G70720.1); similar to 21 kDa protein precursor (1.2 protein) (GB:P17407); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.136053595123286 1.01610598278292 0.331640179705963 1 -0.112299646897320 4.19260242487339 0.136053595123286 0.175808778751997
AT1G30250_at 11.419242618057 11.8478035436300 12.0056498518210 12.1729932433124 12.1895178515609 12.2164310253412 11.5777489292496 12.2231298059330 10.8386693581618 11.6967315535253 11.7554253810608 10.9299117401772 11.7191804748151 11.0004290656872 10.4335547340771 10.7929559529783 11.3191843948359 11.1551148386531 11.3087330879652 0.102068937659313 0.0941961498380104 0.094796909015644 0.0940448441165077 0.0940915992785894 0.0957023493939073 0.0939707025252219 0.0939707025252219 0.110012220949150 0.0975823084611657 0.0977831794834094 0.0969598900379207 0.0984174753752028 0.113003833348293 0.0963783932632694 0.0939707025252219 0.115753518499190 0.100309542487080 0.0939707025252219 1 1 - 10647258 10647367 10647315.833 10646971 10647495 - gene protein_coding_gene FALSE TRUE AT1G30250.1 unknown protein 0.118004170846479 1.01600087343083 0.331688016911473 1 -0.112397764752432 23.1663633949480 0.118004170846479 0.137238902992558
AT4G23330_at 2.88974819645836 2.869405261755 3.12592212231495 2.74404425518708 2.76697656750606 2.67578049910822 2.55012787810180 2.64772774844429 2.98846522966996 2.54544359295990 3.19551306655088 3.04471217246102 2.82660949872619 3.19117111584855 2.32272345824569 3.33603782912945 2.99257194931909 2.71355072815157 3.03377530422319 0.217561770739444 0.226846634941376 0.218869296030192 0.221384231089676 0.216403342910451 0.222996335211895 0.220867985358484 0.217000861873545 0.232983471041709 0.216561376849211 0.225392543596214 0.216403342910451 0.216403342910451 0.219540865528208 0.22366417411612 0.220112544725462 0.221771585528212 0.218983838996647 0.221437069746623 4 4|0 +|/ 12192338 12194592 12193479.429 12192146 12194620 + gene protein_coding_gene FALSE TRUE AT4G23330.1 eukaryotic translation initiation factor-related similar to EIF3A (eukaryotic translation initiation factor 3A) [Arabidopsis thaliana] (TAIR:AT4G11420.1); similar to Os07g0483400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059646.1); contains domain EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT (PTHR14005:SF4); contains domain FAMILY NOT NAMED (PTHR14005) 0.0929475540961269 1.01580212575174 0.331778484572733 1 -0.112583269892838 5.68809453423701 0.0929475540961269 0.070100383319107
AT3G58690_at 4.75126613017537 5.01445499945203 4.63986288167314 4.43212858079629 4.75819963964298 4.63894880188793 5.37516192593049 5.46431790496786 4.6249646384862 4.35660876534293 5.05002638974341 5.10913552652284 4.8747618234897 5.4380392133333 4.99375968947418 4.64826263065159 4.54807064386337 4.60520592909132 4.68836601208595 0.251804106388158 0.24752757525368 0.261879974616361 0.251636563651872 0.244667340053174 0.253498825332525 0.244667340053174 0.25663712365004 0.253701800532902 0.250507160942218 0.252507223858876 0.244667340053174 0.244882122400622 0.251932831394220 0.250593236740558 0.248145403003207 0.259467782907042 0.247912136353007 0.244667340053174 3 3|0 +|/ 21721452 21722182 21721832.889 21720147 21722358 + gene protein_coding_gene FALSE TRUE AT3G58690.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G54820.1); similar to Os05g0207700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054902.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90116.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0911270026659201 -1.01579884093388 0.331779979937133 1 -0.112586335595715 9.61681970943721 -0.0911270026659201 0.0634880632464197
AT3G28050_at 9.62832628364128 9.91125411334777 9.98951726925075 10.0784025042305 10.5463518820541 10.0571476178838 9.91058542018316 10.0997883278162 9.57928670278962 9.66310519579635 9.5484749897394 9.57429323159513 9.59122213893884 9.4926794165198 9.0374213487122 9.46809698269313 9.41655509939865 9.8677525425848 9.47114028246262 0.109384887605102 0.104315359626946 0.113239195575720 0.108525772432026 0.108658650441364 0.109313277342728 0.115629275130699 0.103425850579419 0.110328353341285 0.10366216505966 0.104311551100984 0.104614638125813 0.102484978922828 0.102959073814987 0.117120377094523 0.103176650107211 0.118061010389249 0.109695891442537 0.104505797578123 3 3|0 +|/ 10445476 10446402 10445781 10444051 10446635 + gene protein_coding_gene FALSE TRUE AT3G28050.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT5G40240.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.104375428598792 1.01555067482874 0.331892968249613 1 -0.112817924378852 19.5630413585287 0.104375428598792 0.104274201362879
AT3G02440_at 0.536975935205521 0.823669691530304 0.626772097705539 1.15305649192566 0.870349805571137 0.94332077588900 0.840899737703154 0.523966262063746 0.619341737229881 1.22784862904093 0.731162105575119 0.67957646647088 1.21331765626479 1.21806536455661 0.815602397064696 0.857813584117294 1.31479882298885 1.48495730249246 1.26351394079355 0.201416544038023 0.203206950328596 0.213297890196187 0.207199496716043 0.201416544038023 0.207400192358219 0.202332238070439 0.213992490633336 0.207731065513957 0.213653726735923 0.203857885856102 0.20221394083781 0.207600363976337 0.203218319998425 0.208474212874794 0.20577284300631 0.211105898187561 0.216321966159926 0.207287575493217 3 3|0 -|/ 501046 501690 501379 500811 502236 - gene protein_coding_gene FALSE TRUE AT3G02440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15900.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96951.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.109753581450183 1.01533724513917 0.331990164031134 1 -0.113017060308825 1.82803292376399 0.109753581450183 0.117999954604295
AT3G49080_at 4.71933370798507 5.087810613129 5.02287867251001 4.6984639195924 4.79804366834446 4.6237223361878 5.49018720858973 5.30485561418952 4.62013768178467 4.58364878124169 4.56592068671877 4.84697451062085 4.70920810637296 4.48137711569387 5.23497602349516 4.76358023388891 4.93422330228897 4.94065768148772 4.73758714384306 0.154499715935476 0.145156724766533 0.14318315331532 0.146455814649399 0.141556733572765 0.148780488973442 0.145892442867308 0.157346273504134 0.146740376546722 0.142017882957121 0.143564426580278 0.145650587682388 0.142330556359610 0.148624912295471 0.148291752027680 0.143173750150702 0.146809068026764 0.151683098912690 0.144257631886009 3 3|0 -|/ 18205487 18207502 18206709.5 18205139 18207712 - gene protein_coding_gene FALSE TRUE AT3G49080.1 ribosomal protein S9 family protein similar to RPS9 (RIBOSOMAL PROTEIN S9), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G74970.1); similar to putative 30S ribosomal protein S9 [Oryza sativa (japonica cultivar-group)] (GB:BAC81159.1); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754) -0.101139732433449 -1.01484353493835 0.332215079942359 1 -0.113477575419206 9.69653158916302 -0.101139732433449 0.0956909183885184
AT4G34100_at 10.0797546583519 10.1109668179897 9.98110540811652 10.0464023510848 10.4107873876790 10.0759425872121 10.0168485045943 9.87260409307275 10.3253324472712 9.97347523374822 10.3122439814417 10.2019591921831 10.0868333465608 10.2269869200166 9.90453138176832 10.0973754684613 10.0463481926350 10.2195177481005 9.89014071441853 0.0953333510504224 0.09079245139019 0.0996905162839626 0.0986390413045133 0.09079245139019 0.0944975773509138 0.093918317635037 0.0935864148276417 0.0971807289395002 0.0910440322331379 0.09079245139019 0.0926099690547836 0.0958424804732364 0.0911284537716278 0.092184311916908 0.09079245139019 0.096929352738863 0.0973107469912678 0.09079245139019 4 4 + 16334196 16334836 16334479.111 16330595 16335079 + gene protein_coding_gene FALSE TRUE AT4G34100.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G32670.1); similar to zinc finger (C3HC4-type RING finger)protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37529.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE82278.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0912538227187669 1.01473503206708 0.332264524864400 1 -0.113578758573356 20.1742801397002 0.0912538227187669 0.0643254638241847
AT4G15700_at 5.97206885362687 6.56438192153185 6.26933185149909 6.60873027578366 6.83161961830812 6.55438174257287 5.95442482442564 6.37001200289943 8.34364426050056 8.06883148230895 8.53485855313252 8.0790676836482 6.43218074818979 7.08196035695713 8.19921007840106 7.48705494902433 7.66035422451558 8.27552553321694 7.06456493573255 0.176006087403817 0.1676087398105 0.171920125066492 0.17331398496822 0.175306573775655 0.174504920676973 0.177361306442623 0.168558742571322 0.175069118615023 0.175508505833618 0.172387181152317 0.173961979476788 0.173386864594805 0.175082789246299 0.172709304832331 0.1676087398105 0.176389099574192 0.177343953828858 0.1676087398105 4 4 + 8937581 8937825 8937696.818 8937391 8937890 + gene protein_coding_gene FALSE TRUE AT4G15700.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S3 (AtGrxS3) (GRXS3) [Arabidopsis Thaliana] (GB:O23421); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15690.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); similar to Glutaredoxin-like family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99336.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.121945130562496 1.01465273324307 0.332302032184347 1 -0.113655499563344 14.1628472573641 0.121945130562496 0.146392340275969
AT2G37670_at 2.06190898818371 1.44215189703716 1.57307880064066 1.95895991832594 1.56670479152576 2.09872574551463 1.47470133290201 1.95633789614722 2.34819704792783 2.34015667731145 2.18850036712084 1.91665753537936 1.83796738799125 1.60572598367871 2.02285170464174 2.25775059427631 2.13053829537352 2.24858824244675 2.40561418039687 0.220902074313946 0.217750246744894 0.218361402691091 0.213810497066470 0.230332661403912 0.229756711165009 0.213473950606604 0.225516875519644 0.213316420665598 0.215926507763207 0.220397130533338 0.219442918187044 0.214362331411064 0.217018277612380 0.228135294124889 0.213316420665598 0.228426446275564 0.21846175806435 0.214434109241162 2 2 - 15804470 15804996 15804775.636 15804462 15807614 - gene protein_coding_gene FALSE TRUE AT2G37670.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G02430.1); similar to hypothetical protein LOC_Os11g08400 [Oryza sativa (japonica cultivar-group)] (GB:AAX96348.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.136495584623803 -1.01445409797894 0.332392572186181 1 -0.113840699659108 3.96193541248911 -0.136495584623803 0.177161255264074
AT4G37770_at 2.69098698770695 2.78875811463792 2.99119409284204 3.11375223210993 2.48705708020371 2.96373996383772 1.85310942928857 2.17932033002431 5.23222168974884 3.29522473479117 4.21806862120393 3.6900713684715 3.05481776560785 2.56275671202676 4.83780788268656 2.48698480839979 2.90176033324842 3.31260500009872 3.7783281658404 0.230479370942504 0.225846190553084 0.233036685983791 0.230700945882347 0.225511401938365 0.229531260513766 0.236008127542854 0.228763785594038 0.248388632480979 0.240037165180355 0.229406240548029 0.233081976058087 0.226896815592221 0.229942520279799 0.237505003428376 0.230332418040308 0.233325017068258 0.227973613711988 0.237151932535392 4 4 + 17753336 17753866 17753537.636 17752078 17754151 + gene protein_coding_gene FALSE TRUE AT4G37770.1 ACS8 (1-Amino-cyclopropane-1-carboxylate synthase 8) Encodes an auxin inducible ACC synthase. Identical to 1-aminocyclopropane-1-carboxylate synthase 8 (EC 4.4.1.14) (ACC synthase 8) (S-adenosyl-L-methionine methylthioadenosine-lyase 8) (ACS8) [Arabidopsis Thaliana] (GB:Q9T065); similar to ACS4 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 4), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT2G22810.1); similar to ACS5 (ACC SYNTHASE 5), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT5G65800.1); similar to ETO3 (ETHYLENE OVERPRODUCING 3), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G49700.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Brassica oleracea] (GB:BAC00822.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Diospyros kaki] (GB:BAB89348.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Actinidia deliciosa] (GB:BAA31137.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.103961837579143 -1.01409143217603 0.332557925953362 1 -0.114178759594622 6.37600674129543 -0.103961837579143 0.103575755561500
AT3G10710_at 1.75577701735619 2.35648729157999 2.53803089115958 2.73828300497838 2.35717770769698 1.99614457295112 1.86709616136711 2.06389689904397 2.21425171524489 2.48620589168682 2.30991939702461 1.98729939333868 2.36899481762241 2.50453687177611 2.36482231833821 2.42559348813580 2.25556999146919 1.94993467248007 2.61244100727823 0.212758826604335 0.204033387065811 0.206288627408066 0.224490811712395 0.204932544613814 0.203832205714840 0.206269203647822 0.201636604428136 0.217358429697432 0.225544312532104 0.206955868023959 0.201636604428136 0.203235247135515 0.205386648697597 0.212995260301524 0.203781350577607 0.207064231586893 0.210951073173253 0.209162383082365 3 3 + 3353655 3354212 3353922.182 3352294 3354242 + gene protein_coding_gene FALSE TRUE AT3G10710.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G04960.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE86450.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.114897849614762 1.01391617484302 0.332637854490086 1 -0.114342090954076 4.56334506335489 0.114897849614762 0.130656752220268
AT4G37130_at 4.43734678893058 4.89898060795821 4.85289522057875 4.95928649523382 5.12448229520399 4.9357636313542 5.19257856812325 4.99352368512898 5.12125416561803 5.45968734932998 5.01692018858486 5.09404493732536 4.78407696500205 5.21010709554111 4.68910903425693 5.27737905252084 4.46790364658268 4.68621222879653 4.99515306871021 0.189520778441610 0.185562558036889 0.200573462567462 0.187964544154555 0.185242704516169 0.185242704516169 0.191722752837377 0.192007049042303 0.192539912233239 0.188900377365870 0.189840687826221 0.190222459401037 0.198621610290433 0.188640730433589 0.192580037656323 0.186243196124465 0.193305666728230 0.200423460858806 0.194020288386520 4 4 + 17491120 17491897 17491531 17489461 17492004 + gene protein_coding_gene FALSE TRUE AT4G37130.1 hydroxyproline-rich glycoprotein family protein similar to structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50947.1); similar to Os09g0453500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063345.1); contains domain UNCHARACTERIZED (PTHR23245:SF2); contains domain UNCHARACTERIZED (PTHR23245) -0.100656443126170 -1.01342235893715 0.332863142299455 1 -0.114802179934202 9.97198249729515 -0.100656443126170 0.0947326056936824
AT1G36070_at 6.13383696708022 5.73069890384869 6.02213262095031 5.80042679832031 7.01434457522409 6.51146376414471 5.32237794247664 5.08241105070242 5.04620652156706 5.47146076556217 5.09815050043321 4.6411167333921 4.8447201795094 5.64745214231522 4.74826735755612 5.31400193132792 4.87576826209488 4.97960311238065 6.1729033131054 0.235957303827219 0.235957303827219 0.240851015459961 0.239549091545915 0.240558482279922 0.267443598631014 0.244852516183510 0.244200086690614 0.26508785113509 0.235957303827219 0.243830004942209 0.237399727858236 0.245563635016760 0.242695397517617 0.239149749136422 0.250527806812433 0.248887144807049 0.255461415596001 0.237884653756307 1 1 - 13468436 13469205 13468775.909 13468123 13471888 - gene protein_coding_gene FALSE TRUE AT1G36070.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G78070.2); similar to WD-40 repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96310.1); similar to WD domain, G-beta repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85309.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.112436108798753 1.01320622253955 0.332961783060266 1 -0.115003497125455 11.2432908582373 0.112436108798753 0.125048848526203
AT1G73320_at 3.74929352787633 4.14638656462351 3.94818268310629 4.05414901462647 3.89619344650139 3.7992512777504 3.57483907258098 3.97721353329991 3.38972748902551 3.32855844410237 2.97365915777054 2.84751602664325 3.5116525184704 3.35141204951919 3.23763672785035 3.18502230709024 3.4345053345148 3.35972090146699 3.79929517827099 0.225921567869042 0.226656705137173 0.218675846866421 0.21952529308393 0.214708852499551 0.233215661110779 0.214708852499551 0.214708852499551 0.222822731296108 0.221018497094628 0.214794638131712 0.219338552608104 0.22253387640673 0.219362614950940 0.217657577759539 0.214708852499551 0.221478554968128 0.228981889873358 0.216512333980527 1 1 - 27569391 27570151 27569751.818 27569055 27570883 - gene protein_coding_gene FALSE TRUE AT1G73320.1|AT1G73320.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08125.1); similar to Os06g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056528.1); similar to DNA ligase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22961.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain UNCHARACTERIZED (PTHR14614:SF1); contains domain UNCHARACTERIZED (PTHR14614)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08125.1); similar to Os06g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056528.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53004.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain UNCHARACTERIZED (PTHR14614:SF1); contains domain UNCHARACTERIZED (PTHR14614) -0.102854405824808 -1.01288629385662 0.333107832319784 1 -0.115301426009046 7.26493913923666 -0.102854405824808 0.100939202006474
AT3G07660_at 5.94397070670499 5.70508677293223 5.19512417661132 5.18552002930056 5.60873882231687 5.51096916810061 5.77315483044044 6.06222161735431 5.9910377736467 5.21922355736196 5.23485238248782 6.23672289484683 6.19387814714968 5.89144082888062 5.88495024044189 5.97586718290902 5.48680254750634 4.87019392680304 5.01808900625704 0.208166959994007 0.190590488529106 0.19506400446912 0.208018959962059 0.192104556970058 0.201741682986389 0.199241013203370 0.198114061529543 0.195125282130493 0.193097717591523 0.194289250493713 0.190590488529106 0.190590488529106 0.197290560939741 0.194859616605845 0.192714436665136 0.199168429977713 0.197439349134770 0.193314010512328 3 3 - 2445307 2445903 2445542.182 2444784 2450567 - gene protein_coding_gene FALSE TRUE AT3G07660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13990.1); similar to hydroxyproline-rich glycoprotein family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29556.1); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383); contains InterPro domain Protein of unknown function DUF1296; (InterPro:IPR009719) -0.0918160131596967 -1.01267287615954 0.333205284972305 1 -0.115500125510758 11.1887425811202 -0.0918160131596967 0.0670854804810975
AT4G23250_at 2.62820091908141 2.75109039707895 2.79125047558818 2.42496765498339 2.57843352280555 2.45107934653435 2.55835337447609 2.60444640816248 2.03903466108178 2.29255243497510 2.16233482104309 1.93511549599594 2.47514408377848 2.15352364663119 2.07483499050377 2.34490394331222 2.58872432896654 1.86702704285511 2.60397874032828 0.177808067185774 0.182695625977608 0.181849882927054 0.177549411071117 0.177549411071117 0.188484433919567 0.181518892617915 0.187267657246155 0.188533187563611 0.177549411071117 0.189186100327617 0.181052293825325 0.177719730036404 0.188061914059572 0.197080787393563 0.181295044081868 0.188340531707555 0.182204060883401 0.187076014413419 4 4 - 12162052 12162701 12162412.455 12162014 12167036 - gene protein_coding_gene FALSE TRUE AT4G23250.1 EMB1290 (EMBRYO DEFECTIVE 1290); kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23260.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0928721296905654 -1.01263600405257 0.333222123965157 1 -0.115534451306194 4.85450592380422 -0.0928721296905654 0.0708486263773434
AT2G42990_at 1.15896559337827 1.08462441840597 1.60881315140241 1.18646423556008 1.15274234472668 1.47314381651316 1.14908159529773 1.09122083107506 1.48248878826860 1.17155412916250 1.26109597336194 1.42425938943181 1.72829138768401 0.870607258089115 1.11458465934043 1.46748338591871 1.23003085133017 1.56453778201844 1.44668605961403 0.235750875323808 0.227322772329071 0.235866290165079 0.230978914447967 0.226076281638546 0.231633107036422 0.224715413764153 0.221321116196432 0.225793166467388 0.227824192630294 0.226111641802417 0.227717969040693 0.228412011548633 0.226123622703687 0.225336384376265 0.221321116196432 0.223127011664016 0.224358305273453 0.228135565341937 2 2 + 17886712 17887233 17886967.727 17886108 17887640 + gene protein_coding_gene FALSE TRUE AT2G42990.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G04570.1); similar to GDSL-motif lipase/hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22300.1); similar to Os02g0189300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046141.1); similar to Os06g0636700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058145.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.100009727196554 1.01243547839867 0.333313712305098 1 -0.115721111256268 2.58789249575086 0.100009727196554 0.0931783566934808
AT2G30210_at 1.95755699504037 1.56700824231125 1.83586852816665 1.53459157505778 1.74435027764883 1.69696340394714 1.71243645509179 1.42682570102370 1.05283072503127 1.39087060992328 1.50136654541905 1.37632851808481 1.80022893122407 1.21580864518830 0.978270252047496 1.63640513615299 1.30634070062085 1.67863483408682 1.36494861121955 0.218524390108779 0.209414404954644 0.207478900023593 0.211919491039384 0.209328235347618 0.218205144187693 0.211378586932545 0.206942694635562 0.213647979735906 0.209013765008612 0.211100759771260 0.206161889530147 0.210376159679892 0.213240610123883 0.212078563951633 0.206799833178741 0.215601937536103 0.214754223605285 0.207364966094971 2 2 - 12894844 12895472 12895211.273 12894523 12896934 - gene protein_coding_gene FALSE TRUE AT2G30210.1 LAC3 (laccase 3); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC12 (laccase 12), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G05390.1); similar to LAC13 (laccase 13), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07130.1); similar to LAC5 (laccase 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G40370.1); similar to laccase [Populus trichocarpa] (GB:CAA74104.1); similar to diphenol oxidase laccase [Glycine max] (GB:AAM54731.1); similar to laccase [Pinus taeda] (GB:AAK37826.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.102054780566668 1.01211428089288 0.333460455126938 1 -0.116020036263628 3.03756161099148 0.102054780566668 0.098976852009845
AT3G04050_at 1.61073011278896 1.77797899741588 1.96337398920508 1.94671229157697 1.57972274679262 1.44948939734087 1.75884040388014 1.53726732244607 1.35777607323361 1.69872078540947 1.45260690677656 1.54399831645877 1.28901224746124 1.93222694215781 1.84578863009613 1.88571569526729 2.01460449157787 1.76433877857596 1.75293404988515 0.216855241026846 0.217479035413988 0.216740031737158 0.226444085856386 0.217803272249255 0.223327006413653 0.216740031737158 0.216740031737158 0.217538199197053 0.217835354531093 0.218970395583139 0.223973628021057 0.218406222237880 0.217937531914368 0.224662563624138 0.216740031737158 0.226482405864833 0.222207983834501 0.225728290098641 3 3 + 1050932 1051483 1051196.727 1049802 1051529 + gene protein_coding_gene FALSE TRUE AT3G04050.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT3G55810.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT3G55650.1); similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT3G25960.1); similar to pyruvate kinase [Glycine max] (GB:CAI53675.1); similar to Pyruvate kinase [Medicago truncatula] (GB:ABE78303.1); similar to Pyruvate kinase, cytosolic isozyme (PK) (GB:Q42954); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) 0.0882566309832486 1.01208590837984 0.333473419728706 1 -0.116046437655210 3.36260447629209 0.0882566309832486 0.0531436072555233
AT2G17550_at 5.3530470793034 6.41631528636898 5.09814360864705 5.48887640660781 6.78959722349213 6.07418171823639 5.33052511025079 5.57556281766436 6.60409595080724 5.69860992625921 7.18954866605017 6.09480160191411 6.13195765999139 6.55982354176752 5.70234361567702 6.50830049725468 5.40219529305869 6.51423732530695 6.06996310260278 0.247894538899599 0.241292204223237 0.261744663106532 0.254442483833159 0.244734864166659 0.267384034712957 0.240921299755535 0.240043698692587 0.256237616249818 0.246686757502491 0.243789767158604 0.241887421916979 0.249105810383873 0.244724154750566 0.249616021202332 0.248341065479591 0.248910187929373 0.252922646446609 0.240185045006178 2 2 - 7641703 7642094 7641890.182 7641356 7644914 - gene protein_coding_gene FALSE TRUE AT2G17550.1|AT2G17550.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20240.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93803.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22715.1); similar to Os03g0130700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048856.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20240.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93803.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22715.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93804.1) 0.166257598876725 1.01202078603669 0.333503178287913 1 -0.116107033479291 11.9593431654967 0.166257598876725 0.235702372143564
AT2G16570_at 1.43549526450970 1.55526928816374 1.55947815186366 1.62753728975973 1.46557317298441 1.28186364183619 1.49079868678316 1.85403720656894 1.80347975571181 1.50575843826079 1.28363700151427 1.46125777105285 1.81808874232419 1.19532560023305 1.52296525104849 1.03940613726664 1.66058812745466 1.57462466490133 1.28640476255888 0.191195406328869 0.183058025758042 0.183857378336825 0.183058025758042 0.189294541974829 0.190003677054172 0.185285965795459 0.184685808334867 0.192410856358561 0.187499407378602 0.189479675610725 0.188701938234282 0.183891038751536 0.193909213203011 0.187420530682245 0.186221154521062 0.193249978718304 0.201363172773234 0.189807044718482 2 2 - 7187533 7188049 7187752.727 7187227 7189275 - gene protein_coding_gene FALSE TRUE AT2G16570.1 ATASE (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1); amidophosphoribosyltransferase Amidophosphoribosyltransferase (ATase: EC 2.4.2.14) is a key enzyme in the pathway of purine nucleotide biosynthesis similar to ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G38880.1); similar to ATASE2/ATD2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34740.1); similar to 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum] (GB:AAR06289.1); similar to Purine/pyrimidine phosphoribosyl transferase [Medicago truncatula] (GB:ABE79947.1); similar to phosphoribosylpyrophosphate amidotransferase [Vigna unguiculata] (GB:AAC24007.1); contains InterPro domain Amidophosphoribosyl transferase; (InterPro:IPR005854); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -0.0938406854657233 -1.01196062723359 0.333530670427784 1 -0.116163007947036 3.02194041155116 -0.0938406854657233 0.0743670634152932
AT1G25375_at 5.46757391639021 5.76269475052735 5.18004657396013 5.31119297858307 5.06079101795909 5.44034490707732 5.57521342706086 5.16556075650556 4.88568701499245 5.5262824663254 6.06899715972954 5.62040144998985 5.64575845138465 5.22340758345909 5.46915404374818 5.25348396817252 5.43095640373932 4.90492432933516 4.56941012351053 0.212239227021056 0.204837523124580 0.208060826316548 0.206940533980244 0.208291728376322 0.209154412488164 0.204484168147842 0.211454247685974 0.232204883229999 0.21629654584849 0.213316514662249 0.201955592602879 0.20787653792493 0.211679766575564 0.213364855098281 0.20597406996583 0.221163780642643 0.210230841501241 0.213167423980080 1 0|1 /|- 8900298 8901411 8900806.2 8900140 8903244 - gene protein_coding_gene FALSE TRUE AT1G25375.1 metallo-beta-lactamase family protein similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52799.1); similar to Os01g0133500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041939.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.106837689429614 1.01188273608734 0.333566268602233 1 -0.116235477361922 10.5933916036601 0.106837689429614 0.111639996909123
AT4G33900_at 1.90876562315441 1.60996973494302 2.03187357587162 1.80817733241009 1.50692101232837 1.62055490218070 1.70221531272554 2.32987169383939 2.4031179159894 1.94730118603416 2.38423876122008 1.99030284562654 1.99031079890254 1.70164931518717 2.12135638591827 2.10163397959963 1.69189774835838 1.72103443344823 1.78143314190678 0.163172269899139 0.17142508036473 0.167533721287696 0.172433318715882 0.165469617606636 0.166935151274971 0.170445150127152 0.164540695152551 0.167178078276993 0.167125426265004 0.165498803149620 0.171508896721675 0.166050410340935 0.168826211157825 0.171558813738005 0.166319594124794 0.168293350377057 0.174374721256279 0.168450119341091 4 4 - 16251582 16252152 16251860 16251577 16252716 - gene protein_coding_gene FALSE TRUE AT4G33900.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G23580.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.113485799956035 -1.01185124635733 0.333580660980175 1 -0.116264773911896 3.81817053918634 -0.113485799956035 0.127894794584419
AT1G17240_at 1.69984485733558 2.30124723111314 2.99385758074972 2.75600309474687 2.13603640648554 1.92519038057891 2.07360853959505 1.52440922544434 1.79913792008047 1.79850337173858 1.40336594951160 1.44460874702092 1.37132121922468 1.31224549182867 1.38534238959300 1.57108377787012 1.92373452713844 1.40008199696875 1.7477187795926 0.197024448266977 0.195281045041421 0.193484079637872 0.205814658774232 0.187535858772594 0.188176513088623 0.187535858772594 0.189596073287089 0.199982824137561 0.187822957661619 0.199229538006477 0.194479986580003 0.187535858772594 0.192784501360805 0.190623309826045 0.191957647723573 0.19475484698692 0.189953983816075 0.200167479275808 1 1 - 5896526 5897082 5896782.636 5896409 5898710 - gene protein_coding_gene FALSE TRUE AT1G17240.1 leucine-rich repeat family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72300.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17250.1); similar to leucine-rich receptor-like protein kinase [Daucus carota] (GB:AAL99366.1); similar to leucine-rich receptor-like protein kinase [Daucus carota] (GB:AAL99365.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.123840362096102 1.01180147940694 0.333603407893082 1 -0.116311073205936 3.80540451593868 0.123840362096102 0.151295261026743
AT1G78120_at 2.96957687854570 3.08376010792394 2.78490322418458 3.01877745411904 2.79194656257845 2.79255126282813 3.08324167653681 3.23368623979341 3.09466808351541 3.57228858900369 3.49647276550666 3.5540220680646 3.46096317336954 3.35220938485635 3.63677700559442 3.1424891061044 3.49947872484282 3.62072563497922 3.535534809693 0.196500675198915 0.204937730965973 0.192598707496639 0.201643719350124 0.194000085845293 0.196520447937189 0.194465706885320 0.194667018027255 0.198635990126446 0.1918119192048 0.198430856931987 0.193275847866276 0.195285633612860 0.200742846444402 0.196664955336780 0.193643046773076 0.209185595505079 0.205686616930189 0.199044727887337 1 1 - 29398921 29399563 29399346.727 29398832 29400979 - gene protein_coding_gene FALSE TRUE AT1G78120.1 tetratricopeptide repeat (TPR)-containing protein similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT5G65160.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE94078.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0879799304641833 -1.01179993190728 0.333604115224993 1 -0.116312512849351 6.40541678930648 -0.0879799304641833 0.0520226894135722
AT3G58290_at 1.43174306212443 1.56919043975211 1.31792333330491 1.14486821685875 1.35972950815782 1.30074252290449 1.17149959585406 1.50833601099608 1.25036310351092 1.43695636815296 1.56932504128504 1.14892289094437 1.21681595622084 1.18807664741355 1.19247171493151 1.16947493714734 1.14007656661196 1.55431754250803 1.26787305666680 0.250926947020069 0.249837679180162 0.249606832521023 0.251222244946216 0.246491210579324 0.250051607439671 0.243520996794286 0.252166215103356 0.251555147144966 0.242469888581087 0.252791685951735 0.249935602198394 0.243064440753986 0.246485762118235 0.248128939737874 0.243934647238167 0.244712381108165 0.246490054730990 0.248871320133372 3 3 - 21591599 21592395 21591872.182 21591549 21592838 - gene protein_coding_gene FALSE TRUE AT3G58290.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58280.1); similar to Os12g0489100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066793.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94399.1); similar to ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98280.2); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.0926693645929529 -1.01163772886818 0.333678261199854 1 -0.116463400859928 2.64592042203228 -0.0926693645929529 0.0704606870721539
AT2G31660_at 5.65775215069616 5.6310404377262 5.94340305829546 5.69263656742825 5.78909879473427 5.46307699066464 6.63205521788567 6.60195290542816 5.09433214924859 5.33105368423528 5.34997193513593 5.89965511238412 5.61351217759926 5.40297086315779 5.47608611038943 5.58697075329244 5.72973724878425 5.30888629537464 5.54432815786282 0.186179470083423 0.174632606083143 0.186433067984701 0.174528853779421 0.181859736821212 0.182496396576596 0.187101525053094 0.186334746319499 0.184940915706083 0.184102645568022 0.180793172095574 0.187781749683318 0.178159205581193 0.193242596461472 0.194260189498075 0.176055761649985 0.188383652580366 0.184676899165256 0.180251351381795 2 2 + 13477550 13478391 13477936.364 13471375 13478898 + gene protein_coding_gene FALSE TRUE AT2G31660.1 SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2); protein transporter SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) (ISS) [Ostreococcus tauri] (GB:CAL58278.1); similar to OSIGBa0137O04.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66582.1); similar to OSJNBa0008A08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01598.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) -0.0929552551271103 -1.0114362969662 0.333770356309570 1 -0.116650753760246 11.3609829199225 -0.0929552551271103 0.0715186404296757
AT1G49190_at 1.55714955556098 1.61721034407080 1.92565929402076 1.96194362162251 1.51052109843521 1.74180757555719 1.87455843482524 1.66079206422520 2.47459024840919 2.09581741973407 1.87692644243787 1.70848441626791 1.75631079669776 1.57818123211928 1.88218428435159 1.84124523991167 2.01350545823456 2.71426281706552 2.04934461915280 0.194970632069734 0.1936702697265 0.200729422551533 0.208556418453190 0.195171749945621 0.195473673142186 0.191015028157092 0.195455579832774 0.191490992953909 0.204502456631489 0.212267342848356 0.196788911982854 0.20873847759915 0.197284816075424 0.195852611805906 0.191015028157092 0.208313892583582 0.21486632640345 0.202184319082014 1 1 + 18196459 18197182 18196977.273 18195010 18197266 + gene protein_coding_gene FALSE TRUE AT1G49190.1 ARR19 (ARABIDOPSIS RESPONSE REGULATOR 19); transcription factor/ two-component response regulator member of Response Regulator: B- Type Identical to Putative two-component response regulator ARR19 (ARR19) [Arabidopsis Thaliana] (GB:Q9M9B9); similar to ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT3G62670.1); similar to Putative two-component response regulator ARR19 (GB:Q9M9B9); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.0888206060706102 -1.01139781062559 0.333787954480368 1 -0.116686546655554 3.79519108936530 -0.0888206060706102 0.0558388558552286
AT1G29610_at 1.28671630320548 1.34943947742892 1.52151323689056 1.34398825581489 1.72950021454526 1.69809089903669 1.88155056770057 1.60170512898302 1.79496879012013 1.90426484317224 1.33008488131229 1.66560621919033 1.88436613056498 1.83414112982047 1.86357981560759 2.40807085535408 2.35848282867154 1.74414709078365 1.55254887237384 0.185769390536311 0.187802630137817 0.186873712183376 0.191109081174736 0.184172647776740 0.183904543831464 0.187673739808296 0.183904543831464 0.184792821280872 0.187188846626043 0.186707678311417 0.187293803982117 0.184927500448973 0.185714188230558 0.186223567983091 0.190923212995727 0.183904543831464 0.188065629021298 0.185175874169309 1 1|0 +|/ 10345752 10346170 10345954.444 10345749 10346229 + gene protein_coding_gene FALSE TRUE AT1G29610.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G29570.1) 0.0894429913000324 1.01084019639611 0.334043004528063 1 -0.117205012057827 3.36989002918493 0.0894429913000324 0.0586216971543543
AT4G14080_at 0.943335344465283 0.518926718411965 0.92553570537069 0.777642969525368 0.13362612532213 0.6100985144821 0.732038718477609 0.51538354912142 1.38774459190320 0.377671139919736 0.954015395345908 0.795886109598935 1.10452158231323 0.735496397783497 0.917725960691471 0.653699547173956 1.35522804007876 0.443419326315372 1.30619267905299 0.191394844105153 0.187766528289140 0.184101551717264 0.194696966591003 0.183714685969486 0.197387972271521 0.196960653558183 0.186640429366471 0.187220724850955 0.180015317054799 0.182625978751731 0.186275430864469 0.184173146108697 0.193464820203095 0.191019250270355 0.180015317054799 0.188173681908794 0.196578469755498 0.190167830296573 4 4 - 8118872 8119310 8119115.091 8118532 8120353 - gene protein_coding_gene FALSE TRUE AT4G14080.1 MEE48 (maternal effect embryo arrest 48); hydrolase, hydrolyzing O-glycosyl compounds Identical to Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3- endoglucanase) (Anther-specific protein A6) (A6) [Arabidopsis Thaliana] (GB:Q06915); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G23770.1); similar to beta-1,3-glucanase homologue [Brassica napus] (GB:CAA49513.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.109782839661665 -1.01037607159846 0.334255402419178 1 -0.117636374047157 1.59150771324938 -0.109782839661665 0.119390203515765
AT1G64440_at 5.32373775694831 4.78906950148058 5.0183285577541 5.38842879957841 5.21022218757177 5.22248032803562 5.72323845202262 5.43576116035139 5.46068686888443 5.46960176099745 5.33242407557629 5.77254079248829 5.22646402443831 5.46489528531944 5.47333789072701 5.22394649741396 5.40218391270068 5.15728278505971 5.55798994296651 0.191915468905736 0.191303162238942 0.190303605791564 0.200994577481093 0.191267390593917 0.198161267489529 0.188393731777834 0.192678878723514 0.201704432336521 0.198039478147936 0.190157632147753 0.191261518353137 0.19173441016278 0.192062798564580 0.191502077685865 0.189406663926109 0.193094830998773 0.202989073351824 0.190977044883723 1 1|0 +|/ 23941950 23942984 23942180.3 23940693 23943562 + gene protein_coding_gene FALSE TRUE AT1G64440.1 RHD1 (ROOT HAIR DEFECTIVE 1) Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis. similar to UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT4G23920.1); similar to UDP-glucose 4-epimerase [Medicago truncatula] (GB:ABE94042.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) -0.111272599558210 -1.01020399517112 0.33433417519579 1 -0.117796262486951 10.7027719757586 -0.111272599558210 0.123056077979464
AT4G04110_at 1.22550217453689 0.909514404190403 1.26805205197586 1.24965875255619 1.07871311859939 1.41054855858511 1.18542448806873 1.25984056483353 1.20060018151772 1.23159432097770 0.992512829668898 1.09091580652462 1.59741364915208 1.48384693326686 1.16077661030656 1.37323681360348 1.49598271907313 1.66578951838970 1.38757293954154 0.206097955509108 0.203670876127677 0.204865344834362 0.202170122808892 0.208200725872596 0.207978649138818 0.202170122808892 0.202170122808892 0.218132722534939 0.207665423201756 0.204658794646842 0.205534019154689 0.207115860526536 0.21177884368067 0.203396896741823 0.203664496060730 0.212348782321476 0.203967377089366 0.210699417549320 4 4 + 1973290 1973963 1973539.818 1972589 1974012 + gene protein_coding_gene FALSE TRUE AT4G04110.1 Toll-Interleukin-Resistance (TIR) domain-containing protein similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G46470.1); similar to disease resistance-like protein [Brassica rapa] (GB:AAV74409.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.095488129253799 1.00977568322582 0.334530306280242 1 -0.118194141175363 2.51381435117351 0.095488129253799 0.0803985775117771
AT2G30040_at 3.30995291614140 2.96384554001260 4.10288800038639 3.68892410300372 2.90427694036902 3.07298639170491 4.51513182485189 3.93029349276532 1.96253985836986 2.48891930487565 2.15833453235943 2.17075494166860 2.75799626886762 2.45008850580348 2.54974201957517 3.3181261385457 3.4346427805869 2.42757743773337 2.09845918403564 0.237380892553607 0.233111511078514 0.234334100324802 0.230956088524368 0.234570652155085 0.231970248811845 0.241026029834984 0.231406864231046 0.237006929666396 0.230448486287816 0.234354409929350 0.230412155463263 0.229714077954917 0.231576563780438 0.244278529776590 0.229714077954917 0.232632668713261 0.233553815874760 0.240893863037235 2 2 + 12829616 12830190 12829898.273 12828787 12830246 + gene protein_coding_gene FALSE TRUE AT2G30040.1 MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14); kinase member of MEKK subfamily similar to MAPKKK13 (Mitogen-activated protein kinase kinase kinase 13), kinase [Arabidopsis thaliana] (TAIR:AT1G07150.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95405.1); similar to Os03g0292700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049804.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.118782313902683 1.00930306263396 0.334746825324975 1 -0.118633020577001 5.98189437310587 0.118782313902683 0.140766452419137
AT1G74700_at 3.36239471319249 4.00902632741775 3.51274381771006 4.15862074820742 3.83420805390488 3.6774916149515 3.23411666294091 3.47556627315532 3.52178715515667 3.73640203720701 3.45943784141414 3.39302686905458 3.4483270479686 3.38558126665619 3.38468803713647 3.17829448952613 3.76874271337627 3.44305705603406 3.08448110846862 0.243151742137215 0.229880759849853 0.239173464523072 0.239980990569624 0.233539818795132 0.248064008543003 0.234970559426269 0.230963713578038 0.251939026541806 0.228184172432285 0.231636437437083 0.236492483258726 0.234518414695930 0.230383692453131 0.239927584024824 0.228043667888432 0.236868468051067 0.236570557984485 0.228293494932856 1 1 + 28069666 28070755 28070354.273 28068927 28070878 + gene protein_coding_gene FALSE TRUE AT1G74700.1 NUZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Identical to Nuclear ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3 endonuclease) (Zinc phosphodiesterase NUZ) (NUZ) [Arabidopsis Thaliana] (GB:Q8LGU7;GB:Q9CA48;GB:Q9SSF6); similar to CPZ [Arabidopsis thaliana] (TAIR:AT2G04530.1); similar to Os02g0214300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046280.1); similar to RNase Z (ISS) [Ostreococcus tauri] (GB:CAL55620.1); contains domain RIBONUCLEASE Z, CHLOROPLAST (PTHR12553:SF4); contains domain no description (G3D.3.60.15.10); contains domain Metallo-hydrolase/oxidoreductase (SSF56281); contains domain ELAC RELATED (PTHR12553) 0.130288856359272 1.00898838053736 0.334891046085968 1 -0.118925144079935 7.09812161748 0.130288856359272 0.165820994248714
AT3G01250_at 1.13195257098151 1.06829877628852 1.5794547839676 1.13582110861585 1.24061330641925 1.03680312430573 1.07842407788257 1.33653054827906 1.54493277888853 1.45907824222511 1.56309317167057 0.871108255502246 1.40725876624796 1.35268154815770 0.891275380631524 1.20515449957669 1.08196913523588 1.16376012374794 1.45961033177003 0.198024276797495 0.190008313030611 0.193955213015901 0.192446012964300 0.191598633476421 0.190799394403395 0.189939997816636 0.189556279050684 0.199063277560425 0.192159201105096 0.193464362483207 0.199361281153461 0.198038686473185 0.191913993342183 0.197787790569046 0.194488680965554 0.194236538203726 0.197680844823306 0.192747488824406 3 3 + 79419 79863 79608.364 79312 80112 + gene protein_coding_gene FALSE TRUE AT3G01250.1 unknown protein -0.100732293364525 -1.00893163343251 0.334917058503566 1 -0.118977815253972 2.54094298428795 -0.100732293364525 0.096200367541473
AT3G62370_at 7.87238238524662 7.69324542092277 7.19085144167307 7.28597096314135 6.80693620043595 6.99102462461692 6.49649457232388 5.86479809886797 7.44249075750413 6.46930744265742 7.06139800618362 6.86276015229273 6.34350119952871 6.79430683597029 7.11442753994949 6.10978097633835 6.19064647475089 6.79950223319155 6.98486748042686 0.192156049436669 0.188732808297803 0.194657319356137 0.190608912736173 0.203216225505389 0.194791823813995 0.192528961484339 0.191605967854221 0.20302132778535 0.192298644459330 0.199351914916937 0.188732808297803 0.198032397725319 0.20024090237259 0.194902491415994 0.190229503899764 0.196431496749784 0.200546677532679 0.188732808297803 3 3|0 +|/ 23092939 23094097 23093714.333 23091734 23094257 + gene protein_coding_gene FALSE TRUE AT3G62370.1 similar to Os03g0309000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049909.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95557.1) -0.109524555730295 -1.00889010851700 0.334936094133942 1 -0.11901635606062 13.8377607904728 -0.109524555730295 0.119152472733033
ATMG01330_at 3.41262418800733 2.79567270625738 3.35249153702562 3.15817395947186 3.02067127474146 3.32173872781415 3.08857603840405 2.86310728483868 3.20199058769558 3.35320461106277 3.05453952455346 3.11246261953622 3.27109846443403 3.26561790247454 3.33621427882037 3.02524331346741 3.40415614972936 3.37740384335769 2.97443649221674 0.161312098520593 0.164656038737955 0.155304553852961 0.158569482625091 0.162418822907571 0.163418878010454 0.156421832566275 0.156281138736875 0.155982578831610 0.158181227996596 0.154421825682409 0.159055370962357 0.159729406937244 0.159843785129957 0.154421825682409 0.154421825682409 0.157954747635347 0.156536708186955 0.156619558380163 M M - 329217 329230 329223.091 329082 329465 - gene protein_coding_gene FALSE TRUE ATMG01330.1 Identical to Hypothetical mitochondrial protein AtMg01330 (ORF107h) [Arabidopsis Thaliana] (GB:P92563) 0.113785967720677 1.00850740646119 0.33511156785838 1 -0.11937149506251 6.33032491908923 0.113785967720677 0.129486782948517
AT1G61280_at 2.00998598757484 1.82055338645488 2.38561605460326 2.28928120106426 1.72694501506724 2.30088270112285 2.04693951332961 2.07160062882968 1.89939154973105 2.01518916371708 1.7789065294468 2.01171317225116 2.2833147116948 1.57036305346437 2.20451867615085 1.75750602169194 2.11720411935712 2.26547826930983 2.02075149229119 0.184325058113144 0.177745525964854 0.178129362182817 0.180266502261469 0.178439470698808 0.179726616024303 0.180525664742975 0.180047187427621 0.192676295989542 0.182931367031573 0.179944375007087 0.179560955521806 0.180211205137669 0.181990127591564 0.177836510452391 0.183315249079158 0.187309944070367 0.18404581522849 0.182716197941117 1 1 + 22607293 22607709 22607435.727 22607251 22607746 + gene protein_coding_gene FALSE TRUE AT1G61280.1 Identical to Probable phosphatidylinositol N-acetylglucosaminyltransferase subunit P (EC 2.4.1.198) [Arabidopsis Thaliana] (GB:O64792); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39440.1); similar to Os03g0640300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050743.1); similar to Down syndrome critical re (GB:ABF97824.1); contains InterPro domain PIG-P; (InterPro:IPR013717) 0.104296432254116 1.00843788210216 0.335143452914910 1 -0.119436000327471 4.07001037988114 0.104296432254116 0.105999019174895
AT1G01980_at 0.650244099120813 1.06812409957997 1.48304607401132 0.841721577681775 1.01878812729958 1.01090446893606 1.02489520227622 0.346526561834991 1.13944078779265 0.925582723381099 1.09651220084854 0.843457105314505 0.825035213182654 0.908099771252241 0.798440388609234 0.774020362258288 1.41414898963144 0.682934693110277 0.823558255395641 0.215207205425820 0.212186572393077 0.213634496447882 0.220665153550894 0.215596630549878 0.222251831573675 0.214780934798398 0.211284443817401 0.243527165577547 0.217864089508748 0.21939163669099 0.211284443817401 0.216739588123156 0.219901409362729 0.225697770257147 0.211284443817401 0.213129905195717 0.227015056674281 0.216674452177181 1 1 - 340526 340917 340688.909 340172 341999 - gene protein_coding_gene FALSE TRUE AT1G01980.1 ATSEC1A; electron carrier member of Reticuline oxidase-like family similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G11770.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20840.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90038.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.135569036474308 1.00813699970962 0.335281468446954 1 -0.119715119638789 1.87087711603377 0.135569036474308 0.177004297124176
AT2G27330_at 5.46722257084759 5.43279298390939 5.21964386357029 5.34506786946703 5.05051172661545 5.24019083523217 5.09039595560678 5.01137340651222 4.58279971550135 4.36994234444413 5.05928773910999 4.95272477279657 4.38054920940948 4.95807747135561 4.89300123251086 4.33491349820315 4.43686519970807 4.45957068087875 4.47692652668655 0.207290871327566 0.213110543428880 0.203750436154255 0.213789616191617 0.212796997891249 0.210902399555017 0.206247876685218 0.219109380182111 0.221330347389695 0.218192566041953 0.224916082519674 0.202014661215465 0.215055159197825 0.203629626188353 0.203302180329214 0.202014661215465 0.215139521728812 0.202014661215465 0.214425415191355 2 2|0 -|/ 11702431 11702896 11702711.75 11702112 11703705 - gene protein_coding_gene FALSE TRUE AT2G27330.1 RNA recognition motif (RRM)-containing protein similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G06210.1); similar to RNA-binding re (GB:ABE84363.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0856124372273934 1.00775157510354 0.33545832479825 1 -0.120072566888908 9.8126148619904 0.0856124372273934 0.0420844268648355
AT4G26800_at 1.51231194911222 1.31690900965475 1.85673122549739 1.77773996871931 1.30172459556692 1.45663037110670 1.48820037565287 1.84714998382517 1.76813541126289 1.45660538102650 1.91880711551964 1.63364128994332 1.87725552729125 1.57860686875161 2.15229943113910 1.44117308747036 1.92719710976682 1.91172192547958 1.79665193209262 0.156271986607545 0.156271986607545 0.158726950846914 0.160616621741124 0.164643917282475 0.166431395625519 0.166860318760012 0.165370728377617 0.160038241047213 0.167128651625558 0.166186751229505 0.159546839360272 0.168967546556318 0.161862729572047 0.163101706341312 0.169746557835985 0.166903912940115 0.162716837346978 0.161230370188881 4 4 + 13490916 13491438 13491141.545 13489841 13492060 + gene protein_coding_gene FALSE TRUE AT4G26800.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G62680.1); similar to pentatricopeptide repeat-containing protein [Raphanus sativus] (GB:AAP86199.1); similar to fertility restorer homologue A [Raphanus sativus] (GB:CAD80166.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0941769651437675 1.00749771853555 0.335574847177193 1 -0.120307935503546 3.30911736949902 0.0941769651437675 0.0768609286043451
AT2G16980_at 1.64909462431272 1.50292048432570 1.62898665288000 1.41759713186169 1.55678620095796 1.84087372423284 2.17840540311651 1.69041407510202 1.50068924868396 1.48692316379696 1.55746570294747 1.94505345169983 2.06993038596269 1.68458683816073 2.09007635499076 2.03771813921270 2.14905729564703 2.00599984535708 1.77908926768871 0.237580328823055 0.237446152641707 0.255587268111917 0.247363557564820 0.239917375046959 0.255929187316316 0.233773182347531 0.235706730578111 0.247673506586157 0.233773182347531 0.236131398369244 0.233773182347531 0.248812756083373 0.234125226336675 0.233773182347531 0.24019706619707 0.242964939747711 0.241050241412540 0.250007446351433 2 0|2 /|+ 7386783 7387968 7387515.429 7383431 7388185 + gene protein_coding_gene FALSE TRUE AT2G16980.1|AT2G16980.2 tetracycline transporter| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16990.2); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE80432.1); contains InterPro domain Tetracycline resistance protein; (InterPro:IPR001958); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.104718861229814 1.00749742335097 0.335574982686816 1 -0.120308209162160 3.44882806800059 0.104718861229814 0.107362765574263
AT1G59950_at 1.38647079349053 1.73001117752569 1.35304291764257 1.93283394120445 1.26807769305658 1.73237032960371 1.49016258035661 1.55751162677023 1.93629843236332 1.62236039881191 1.68676342692679 1.50955985095404 1.11851275179021 1.10940722801340 1.53630883357236 1.22022282795221 1.62294012251536 1.59564391910483 1.52258353433219 0.173782312949689 0.173933079499555 0.176331194857616 0.175005320976656 0.170815204309253 0.174478787613105 0.172411815446065 0.170694589653068 0.176737438812643 0.175923777326674 0.172212411652902 0.171853908559260 0.173682554749989 0.176132579616933 0.181618703039200 0.173384878672355 0.175490744727314 0.171174199829344 0.179014054016828 1 1 - 22071718 22072711 22072319.818 22071698 22074253 - gene protein_coding_gene FALSE TRUE AT1G59950.1 aldo/keto reductase, putative similar to aldo/keto reductase, putative [Arabidopsis thaliana] (TAIR:AT1G59960.1); similar to reductase 1 [Hydrangea macrophylla] (GB:AAR89809.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.119142704612216 -1.00732323438031 0.33565495418808 1 -0.120469684210483 3.11564379509269 -0.119142704612216 0.142103189179671
AT3G06870_at 1.23499903914635 1.38907088097426 1.01959106482070 1.02216199539017 1.58777201721574 1.40489044581997 2.09451985685098 1.19996919215329 1.63421445806634 1.89995728727656 1.67428919095740 1.86183417575053 1.69424996406697 1.27416500180458 1.68668119307200 1.42740672255171 1.48619490293029 1.51928820357050 1.30108836024027 0.202151127694661 0.200961161063702 0.205417684136508 0.198764730866670 0.205344908115356 0.208432266423428 0.208248944721625 0.199959476355060 0.203457697632835 0.214517279356377 0.203692671577642 0.207133483911361 0.201846196889531 0.204607400052612 0.204066624614901 0.204838367594000 0.208051488743738 0.209292012464402 0.202928332828980 3 3 - 2167941 2168658 2168325.818 2167853 2168966 - gene protein_coding_gene FALSE TRUE AT3G06870.1 proline-rich family protein -0.127387780329649 -1.00691762059195 0.335841228929106 1 -0.120845604254826 2.96400533047929 -0.127387780329649 0.160242573154476
AT2G45900_at 0.435053088047515 0.727756888474179 0.650244034231293 0.586866862865236 0.638655634618741 0.62969361036329 0.62366072668565 0.392143237033952 0.848933244902614 0.92517059949841 0.713490395549264 0.389306895668778 0.542407623791477 0.492787083926234 0.648379238959567 0.760429881418358 0.655960649544844 0.82988764938364 0.903443107329234 0.189451736952306 0.192132272448224 0.193605898935837 0.188543335168654 0.188543335168654 0.196155723219026 0.188543335168654 0.188543335168654 0.196374954090606 0.197806516298444 0.188543335168654 0.193301666049181 0.197767529196737 0.196224786398489 0.188543335168654 0.191591492727596 0.192963705059339 0.195049553183153 0.194836078611521 2 2 - 18893165 18893690 18893403.091 18893142 18895747 - gene protein_coding_gene FALSE TRUE AT2G45900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61380.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32828.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) -0.0908614614185829 -1.00680969323882 0.33589080646589 1 -0.120945609764319 1.34630767421849 -0.0908614614185829 0.0655264683931765
AT1G74190_at 1.81047315229993 1.91573158635847 1.88199867526434 2.14060793949108 1.7285912114288 1.98626255668556 1.42060156419491 1.89723181344842 2.35661281827906 1.82588738292111 2.21985552662197 2.06551159609004 2.23555792919707 1.91695186538909 2.32859741592065 1.95935402630293 2.18420678816687 2.61588113254567 2.28625917949778 0.205733877725496 0.211140262926289 0.207210465142226 0.212977378707081 0.208785200821418 0.205808965783886 0.215083247284645 0.204653419099107 0.216672450023919 0.221297655717096 0.200619799748823 0.202710384541009 0.205307842887223 0.201774773026242 0.201814921728123 0.202947507949890 0.216697885776546 0.203081009097399 0.200619799748823 1 1 - 27906332 27906716 27906487 27906251 27909819 - gene protein_coding_gene FALSE TRUE AT1G74190.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25470.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74170.1); similar to Os04g0647900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054072.1); similar to H0821G03.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86057.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.103920987385992 1.00669977763534 0.335941302856803 1 -0.121047448594707 4.02118364336074 0.103920987385992 0.105482319445283
AT3G43280_at 0.642581007469498 0.794552439804765 0.7059294881229 0.693034110352904 0.305454505496384 0.618086346145084 0.545545480993786 0.576358232418222 0.451083796219193 0.892174843347382 0.472054451910844 0.471537663684041 0.944742712084502 0.722610649602955 0.783804718740783 0.662223235396804 0.746244030899187 0.228462124640346 0.90329722229019 0.241855585188077 0.243697796947590 0.241855585188077 0.245446036873171 0.244161696400519 0.246480729149965 0.245241724466829 0.247734832076801 0.250652028769646 0.248276738310332 0.246858777372270 0.241855585188077 0.248776503810476 0.257822428815908 0.243450570810886 0.242985212763243 0.244887226633552 0.254642148190528 0.244816088804671 3 3 - 15240768 15241203 15240998.182 15240766 15241239 - gene protein_coding_gene FALSE TRUE AT3G43280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19240.1) -0.0895125916122857 -1.00654416438878 0.336012802773044 1 -0.121191611613903 1.29909865251154 -0.0895125916122857 0.0604329336260415
AT1G17910_at 1.99727688509279 2.10520430509839 1.87246601548870 2.16376345430855 1.61115716009696 1.75257541396297 1.79467676042155 1.92214343370737 2.27430568531997 2.15631438794815 1.76389617448464 2.03640166939951 1.86398831000380 2.03132767139049 2.23340473472964 1.91664056928613 2.31824623425026 1.96642182618181 1.84468609875270 0.157392448553902 0.164428697467466 0.160975572299248 0.156367761686661 0.158183948008132 0.167017501498486 0.162180932526890 0.168284453555564 0.164505558995451 0.159501151595402 0.166550900105614 0.156607455299766 0.166294043455053 0.161641454895914 0.163536951594411 0.157240865365265 0.159400693794429 0.160873131553654 0.165374823960346 1 1 + 6161014 6161489 6161295.545 6159119 6161608 + gene protein_coding_gene FALSE TRUE AT1G17910.1 wall-associated kinase, putative Identical to Putative wall-associated receptor kinase-like 13 precursor (EC 2.7.11.-) (WAKL13) [Arabidopsis Thaliana] (GB:Q9LMT9); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT4G31100.1); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G19390.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31110.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) -0.0901563302034455 -1.00624730148188 0.336149233970344 1 -0.121466580502933 3.95643773988352 -0.0901563302034455 0.063052105468436
AT4G22860_at 2.61564517930034 2.17739937191070 2.43193110558724 2.44717301899229 1.92413685834324 2.61849641589775 2.39717797021900 2.61257748606769 2.40253677460045 3.1866294448224 2.99647064982719 3.28354066704330 3.01361935187612 2.88997756529662 3.31936633789583 3.07083084323367 3.25244034306333 2.95032851483935 2.6892930757139 0.196104796447537 0.199808812271566 0.193969768948270 0.193969768948270 0.212109867674182 0.201300381098636 0.209305354285862 0.207455528926106 0.200550990901822 0.203566420725320 0.195986450193392 0.204081659846633 0.199907571516235 0.197615984639888 0.211961207014248 0.203189065261350 0.206093343700994 0.203587246104261 0.202008311036768 4 4|0 +|/ 11999620 12001055 12000175.714 11997404 12001636 + gene protein_coding_gene FALSE TRUE AT4G22860.1|AT4G22860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11990.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81485.1); contains domain FAMILY NOT NAMED (PTHR14326); contains domain gb def: F11M21.29 protein (PTHR14326:SF5) 0.121159850126434 1.00611765114183 0.336208830986213 1 -0.121586648191749 5.33134628371312 0.121159850126434 0.146925738376753
AT4G37360_at 1.68654565916459 1.64917837296182 1.81937893062279 1.50114867685475 0.970846795435975 1.68378252463731 1.58503525379855 1.24645984307095 1.48230760178680 1.684247592521 1.63222154440348 1.67137151140257 1.20144189703537 1.63626474159241 1.69127822748575 1.41926273582616 1.92186747985511 1.80198444888191 2.28353390054922 0.194020520654421 0.194207098318329 0.188793007869529 0.190050311180068 0.187932830531676 0.191140505931456 0.189358707840885 0.198559962987861 0.192919275371033 0.198659007331426 0.192882258053964 0.189110695315597 0.191294468230773 0.191742274359766 0.189400728965602 0.193005172485500 0.210828745901932 0.200177644982625 0.187932830531676 4 4 - 17567172 17567570 17567369.182 17567118 17568852 - gene protein_coding_gene FALSE TRUE AT4G37360.1 CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2); oxygen binding member of CYP81D similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.121375171001632 -1.00609195215489 0.336220645089507 1 -0.121610446228091 3.23712597619968 -0.121375171001632 0.147409408258383
AT2G17050_at 0.855318246555075 0.815319442680356 1.20977366362414 1.26403519592349 0.623722684685342 1.08382329218397 0.810288045640158 0.786455527624653 1.49114273508800 1.24837083282320 0.902089902826998 0.742124411749955 1.16745421024531 0.922106979835717 0.772055170754095 1.11700060848247 0.747614085167176 1.18579581452616 1.35053801443998 0.177826464464981 0.177908511061822 0.176561777171643 0.177978464340296 0.174534920005034 0.174534920005034 0.174534920005034 0.174534920005034 0.176916711268509 0.177222459024346 0.182724303552003 0.177265495524619 0.182040387905489 0.176125088100508 0.179417030470320 0.177289804321933 0.185990625761655 0.174534920005034 0.181150162724243 2 2 - 7417917 7420200 7418472.364 7417917 7422692 - gene protein_coding_gene FALSE TRUE AT2G17050.1 disease resistance protein (TIR-NBS-LRR class), putative similar to SLH1 (sensitive to low humidity 1) [Arabidopsis thaliana] (TAIR:AT5G45260.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G19520.1); similar to TIR-NBS-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81434.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.095163493011366 -1.00574501727167 0.336380164688639 1 -0.121931669809702 2.08503235006409 -0.095163493011366 0.0805782313569227
AT1G64800_at 1.71336884068020 1.8374025295288 2.19684790069701 2.0002024111937 1.9414289276052 1.72554842887113 2.12203320915051 1.60429341200232 1.94952961442257 1.91232823050959 2.04346314642010 2.23414042898365 2.00781876032324 2.01998076060909 2.00431267128729 1.67267484790706 2.26176838308516 2.26121173221346 2.14584420989676 0.169544745518906 0.170374036102768 0.169106719302932 0.177163295403952 0.172035614472675 0.166738155551140 0.167430254882137 0.170945937608257 0.181592650161657 0.168586445637221 0.172082254604314 0.167496227686811 0.173742627816576 0.173174849320196 0.175911100794795 0.171079597286891 0.173318540479758 0.170562829158334 0.168083895598203 1 1 + 24088749 24089071 24088937.909 24088749 24089096 + gene protein_coding_gene FALSE TRUE AT1G64800.1 unknown protein 0.103668204497646 1.00571518799145 0.336393882697001 1 -0.121959284222554 3.92551005394774 0.103668204497646 0.105081763250587
AT3G45830_at 5.88833710728574 6.34744431262514 6.09785795290877 6.65303588193488 6.40294780075866 6.35011529574089 5.05202392997185 6.02202201379955 5.36977382994154 5.61523476779054 5.27591152580281 4.99326119540327 5.08579852366139 5.24942277483016 4.64312765196346 5.58017923922943 6.1206985568067 5.36621591479460 5.62007879646987 0.197465834594217 0.197576797909284 0.202056666393437 0.199785569673895 0.202778030171239 0.205240913470187 0.213018500434561 0.196889313786287 0.208705585069962 0.196659106232363 0.196659106232363 0.197482947009013 0.200793028081372 0.205147421158069 0.198443019315442 0.196659106232363 0.214614989790552 0.203717270851830 0.198464528665512 3 3 + 16855572 16856077 16855836.455 16852262 16856526 + gene protein_coding_gene FALSE TRUE AT3G45830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02290.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44209.1); contains domain NFRKB-RELATED (PTHR13052); contains domain NFRKB (PTHR13052:SF3) 0.151415091663031 1.00566365459629 0.336417583049016 1 -0.12200698961260 11.5139010639842 0.151415091663031 0.209295254860368
AT3G14300_at 1.60512489023985 1.36995155224714 1.78424598241048 2.07032375324934 1.54798980957998 1.54686707232582 1.55170836396616 1.57141822373738 2.01215247691968 1.4151530558813 1.66282524317600 1.31257205427049 1.612338260901 1.53942630180133 1.71831729675499 1.60338197396412 1.59574911112269 2.02525542145227 1.57017456953745 0.200999524180539 0.206176049438657 0.206307617231911 0.202329433810665 0.209546766551419 0.203308273110420 0.209048354825376 0.200999524180539 0.207195088129641 0.207261862690709 0.205320639420777 0.204899522317491 0.203873942504719 0.20849977124443 0.205830466657456 0.206252733555694 0.203548128544334 0.203398505124966 0.207639009953685 3 3 - 4767000 4767485 4767231.636 4766912 4769905 - gene protein_coding_gene FALSE TRUE AT3G14300.1 pectinesterase family protein similar to ATPME1 (Arabidopsis thaliana pectin methylesterase 1), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G53840.1); similar to Pectinesterase-3 precursor (Pectin methylesterase 3) (PE 3) (GB:Q43111); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0903562019973274 1.00518376690864 0.336638343655229 1 -0.122451134422106 3.28073366032444 0.0903562019973274 0.0641789568172939
AT2G14570_at 2.43815434377963 2.5385468174603 2.40297300103662 2.73961062522496 1.98857325514433 2.16743111342764 2.45293046400801 2.20528164133624 2.08934416853482 2.35080540747757 2.09133892012847 2.14147076105112 2.64874681502628 2.38789477979962 2.48115062822880 2.046779755567 1.70319054975260 2.21164474988946 2.52021224902179 0.204622565592338 0.200473350722639 0.198062231589937 0.203865315425124 0.201152187205291 0.203163688140428 0.210170556061271 0.205457064725155 0.220641571888441 0.201970785195097 0.208612255618743 0.201990465056292 0.200031757799098 0.198062231589937 0.205837059062325 0.203123394910684 0.214732519701329 0.207735045219753 0.203410844968604 2 2 - 6228911 6229671 6229179.364 6228862 6230999 - gene protein_coding_gene FALSE TRUE AT2G14570.1 SWIM zinc finger family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48290.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABA98502.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527) -0.0950874031759832 -1.00499100713605 0.336727048037568 1 -0.122629488370096 4.63376152181479 -0.0950874031759832 0.080563147039036
AT3G61340_at 1.16000936456702 0.858754154877647 0.869027937945954 0.865687159170944 0.856958194338577 0.915313068937295 0.98347526193645 0.688704004903861 1.10772419974258 0.47652547644972 0.94311890598786 1.03126928403938 1.26280333098679 1.09492907690063 1.45449645936389 0.879366831604059 0.865471067393103 1.09675887947574 0.955551333823995 0.193308834170998 0.192124338004575 0.19191301331104 0.189627349817042 0.187499050026264 0.189777874096657 0.18879184589065 0.188042794774922 0.203541181516998 0.19401002551086 0.190842198174059 0.190948595651627 0.193433680724094 0.187978295129949 0.189339486821443 0.189611582012993 0.190821801523322 0.1979642629486 0.191392658699395 3 3 - 22712199 22712764 22712468.455 22712054 22713456 - gene protein_coding_gene FALSE TRUE AT3G61340.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G31470.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0929686431618909 1.00488024677963 0.336778025615628 1 -0.122731958456798 1.86230467640523 0.0929686431618909 0.0736369958145067
AT1G70460_at 2.31534369160663 2.36770033012139 2.28812416692141 2.35997074206333 1.94341646250149 2.2750054179517 2.10088158413492 2.39582109138944 2.4623216131417 2.90844227162177 2.61192339940402 2.57877254618118 2.17507153018479 2.51327562899276 2.82285930212736 2.61115548412271 3.15838480776488 2.48020691130322 2.8174020082189 0.189972044121719 0.191432429807260 0.197582618382628 0.194066528597979 0.189972044121719 0.194080953189420 0.195325986463696 0.195359727193298 0.195558649113854 0.191850084648412 0.199502283233667 0.197809753055221 0.200811280729961 0.193475925355941 0.197586939992353 0.191916536095829 0.196200313302262 0.195369385450238 0.194815861656162 1 1 + 26562000 26562633 26562450.273 26559509 26562947 + gene protein_coding_gene FALSE TRUE AT1G70460.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G10620.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G23540.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70139.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0943699533438099 -1.00477497702652 0.336826481392254 1 -0.12282934035439 4.92995535196341 -0.0943699533438099 0.0783239551200941
AT3G46220_at 6.90315505327307 7.44384178648492 6.86550537086671 7.08398849278777 7.28629369801257 6.88195431555654 7.18998669253328 6.67495683649067 5.78791412562471 5.96028038529252 5.60017539069469 6.09044196879366 5.42548261160288 5.89189514827677 5.21355809080038 5.6269749128762 6.37685586903154 5.78926427573533 6.17567724226037 0.257763396019692 0.252164284075387 0.263997664224065 0.259452440655084 0.254248983390432 0.260287938263947 0.252164284075387 0.255429962982255 0.285959046736690 0.252164284075387 0.258693147569396 0.252164284075387 0.255408872071099 0.267663978447602 0.262870229011121 0.26246343080029 0.268101322056056 0.260953144251692 0.252164284075387 3 3|0 +|/ 16993988 16994900 16994487.4 16990060 16995162 + gene protein_coding_gene FALSE TRUE AT3G46220.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80013.1) -0.123171253569513 -1.00467943742227 0.336870462804501 1 -0.122917713968781 12.9044377563518 -0.123171253569513 0.151738756866950
AT3G24640_at 1.23869886706248 1.29348638292496 0.990472747088987 1.383687283715 1.06861539166059 1.20579575810986 1.25998943539373 1.31437197473090 1.07934804990262 1.50511231842261 1.4464813326046 0.974567572163373 1.73429332513358 1.85711667567912 1.51151187966514 1.03696789535570 1.49953689310640 2.09971547255665 1.07508089174503 0.214698276706002 0.216907876564592 0.218857109241846 0.212845673478917 0.216806856433412 0.216397045800379 0.219396992058839 0.217660359694749 0.212559352177003 0.214604715790758 0.222210331662626 0.219703991004491 0.218221910468058 0.229282793361032 0.226344650665353 0.212559352177003 0.217030374415204 0.216275998071083 0.218749144256514 3 3|0 +|/ 8992299 8992706 8992509.25 8992296 8992768 + gene protein_coding_gene FALSE TRUE AT3G24640.1 lyase 0.092841462104286 1.00458245592375 0.336915112303564 1 -0.123007414306732 2.58932521382239 0.092841462104286 0.07329743661267
AT3G26220_at 7.78374656071245 8.19640626397852 7.853353649211 8.32946800718686 8.26687059377652 7.95842184967277 5.1364891899941 5.71271689729411 6.35854401388321 5.65001158458748 3.99371245112053 4.02063674980433 5.0781542695187 4.6273355488039 3.05128965594445 5.11595485800236 5.69049380285861 4.21663534759339 6.3513925048134 0.260549713487574 0.260872976988987 0.259926583845195 0.259989946727827 0.25537509908229 0.263464722750510 0.253444500835758 0.254179788682212 0.2538825384728 0.253272160566399 0.267947903770089 0.266152819409532 0.255547270535765 0.260360745197045 0.272778475538143 0.255243004005371 0.26505508337892 0.263881235561781 0.253539317232724 3 3 - 9597447 9597976 9597649 9597314 9599070 - gene protein_coding_gene FALSE TRUE AT3G26220.1 CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B3 (EC 1.14.-.-) (CYP71B3) [Arabidopsis Thaliana] (GB:O65785;GB:Q8W4B9;GB:Q9LTL9); similar to CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26280.1); similar to CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26270.1); similar to CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26230.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.125508659335962 -1.00361061604701 0.337362779582006 1 -0.123905899875367 12.7018137697535 -0.125508659335962 0.157103891582603
AT2G42330_at 3.49390857314979 3.04957276471605 3.87978726994603 3.77253276172316 4.26012548641323 3.61410353617973 3.93310426968742 2.83758454714212 3.73919973964663 4.00780711480225 3.89087365995328 3.3591315984229 3.78371928177489 3.6290151726249 3.46207704405293 3.55003195728027 3.80400315713847 3.7371749185659 3.88535955467677 0.189679040902856 0.185813378275367 0.198040392621315 0.18692603877566 0.189147188003633 0.185813378275367 0.198063822485884 0.189448364991863 0.198016411008265 0.188906274626593 0.190725824257791 0.191331295461180 0.189709751669705 0.187997102946448 0.191900337904278 0.191967201074768 0.192324193976086 0.197025227284797 0.186280758395078 2 2 - 17638957 17639456 17639182.273 17638164 17641167 - gene protein_coding_gene FALSE TRUE AT2G42330.1|AT2G42330.2 D111/G-patch domain-containing protein similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G17070.1); similar to tuftelin interacting protein 11 [Gallus gallus] (GB:NP_001025836.1); similar to septin and tuftelin-interacting protein [Sus scrofa] (GB:NP_001070682.1); similar to Os12g0615800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067277.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) 0.163821301954918 1.00306497961549 0.337614312325438 1 -0.124410040244320 7.36981931033731 0.163821301954918 0.233876553992743
AT4G21450_at 9.96695307716982 10.2595432875691 10.1533353519101 10.3382271335313 10.5002680957293 10.2029835039360 9.6076087428126 9.7499373832742 9.63705006215743 9.65436077253184 9.55728735169083 9.6578405473969 9.66557839054942 9.51521298987216 9.09222127265737 9.6735489647327 9.32098346476935 9.41941328133054 9.80644403793944 0.120762896804260 0.119647326067264 0.123761040554557 0.118739235645545 0.126808164576892 0.121444094941922 0.123127142705039 0.121405116446407 0.1295404621288 0.122410219148030 0.123601771429044 0.1174275893512 0.122726466760082 0.124564851680411 0.124599058131026 0.1174275893512 0.126127403226667 0.123162130154248 0.118503386182918 4 0|4 /|+ 11427156 11428112 11427584 11426034 11428356 + gene protein_coding_gene FALSE TRUE AT4G21450.1|AT4G21450.2 vesicle-associated membrane family protein / VAMP family protein similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G05060.1); similar to Major sperm protein [Medicago truncatula] (GB:ABD32337.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.0955843619511139 1.00304933904782 0.337621524494223 1 -0.124424488031170 19.6908799422005 0.0955843619511139 0.0827102762829857
AT2G17130_at 8.57761104952551 8.70280351561483 8.36741329520475 8.34185906675267 8.00409921844668 7.38063004050405 6.92847281419574 7.40868076762419 6.86565876624347 7.24350879913017 6.95199939752686 7.4135073712532 6.5788329977422 6.96639043135203 6.63913709869159 7.23261729955363 6.54592978847865 6.54023749948642 6.12298781170648 0.211361135931931 0.21517830613303 0.219788998064015 0.219843606604237 0.214223952524494 0.223916546639529 0.214716851577074 0.213247336487263 0.213632577975335 0.211361135931931 0.218079314527655 0.211361135931931 0.21221260146392 0.217507313014532 0.211361135931931 0.211361135931931 0.224178747283839 0.21706465079264 0.213335197977017 2 2|0 -|/ 7468154 7468678 7468336.5 7467896 7469636 - gene protein_coding_gene FALSE TRUE AT2G17130.1|AT2G17130.2 IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+) NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2) Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 2) (NAD(+)-specific ICDH 2) (IDH-II) (IDH2) [Arabidopsis Thaliana] (GB:P93032;GB:Q7XJT6); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804)|Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 2) (NAD(+)-specific ICDH 2) (IDH-II) (IDH2) [Arabidopsis Thaliana] (GB:P93032;GB:Q7XJT6); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.116819030818750 1.00304593937962 0.337623092162060 1 -0.124427628409543 14.7652628599189 0.116819030818750 0.137971315002428
AT1G04260_at 6.1010903915993 7.10600725616224 5.94532415841962 6.2685259119881 6.79367696646922 6.43335138376019 5.3400790457348 6.58334854583066 5.95902579275101 4.79822577536704 5.6419163246133 5.90178446737194 5.61716098875959 5.66389846736284 5.51861898023529 5.51129105242413 5.18312933846644 5.82591259468827 5.13747765881058 0.261973763625510 0.250292030693362 0.259327516826597 0.256258820550238 0.253605037715191 0.262571201815825 0.257515673930182 0.250320525308996 0.251334697121967 0.259957237494962 0.250292030693362 0.252547166855185 0.257756356658129 0.262796422042172 0.257681089986522 0.250292030693362 0.269347648901343 0.255049883471089 0.253807178623102 1 1 - 1140773 1141163 1140978.909 1140527 1141364 - gene protein_coding_gene FALSE TRUE AT1G04260.1 MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT1G17700.1); similar to Prenylated rab acceptor PRA1 [Medicago truncatula] (GB:ABE79235.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.193654623212438 1.00297286091861 0.337656791669793 1 -0.124495131134316 11.7745290086871 0.193654623212438 0.289051586805631
AT2G18910_at 7.38962883336298 7.43665964795258 6.22524833427908 6.7500286886616 7.33945327501823 7.14987415553425 7.3146083603885 7.16578497279635 7.68453271739791 6.88529870552545 7.61225977093225 7.27575085259604 7.22142796839345 7.43839621600444 7.73801172314915 7.6755172339727 7.1634925156682 7.46329797703497 7.00357234579743 0.181667934458795 0.18131803599679 0.189861423739395 0.182874871843370 0.180975003691260 0.193568506203837 0.184486633337907 0.183878276455128 0.181920887388183 0.19214945670488 0.181771432087759 0.178499643333464 0.178522612483116 0.1842248472898 0.185658343102367 0.182019477023719 0.178499643333464 0.180986191242464 0.178499643333464 2 2|0 -|/ 8200101 8201189 8200940.3 8199790 8201420 - gene protein_coding_gene FALSE TRUE AT2G18910.1 hydroxyproline-rich glycoprotein family protein similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84008.1) -0.101567323803256 -1.00263345292375 0.337813339127494 1 -0.124808590297110 14.4162377193954 -0.101567323803256 0.100266468575534
AT3G17080_at 1.19228457164757 1.38273547391316 1.00964944577789 1.59811391515409 1.17613212980266 0.940115747528717 1.12570913138815 1.12479255373239 1.23476091379280 1.17449999901592 1.01814958651457 1.06821510292255 1.03620716471794 1.09966710597034 0.575052191502078 1.23809286724974 1.19398808793401 1.23828988652694 1.33193289161081 0.183489492399687 0.182064764494431 0.182093497843844 0.185477348363202 0.180282527851887 0.183925169749530 0.182011135653425 0.182676490085620 0.189286645636774 0.188705651380089 0.186026139517793 0.185136451649327 0.190208330832675 0.189142755632802 0.205553403685847 0.182084947388589 0.192082683399226 0.195648954120562 0.186380990236347 3 3 + 5825348 5825720 5825523.545 5825295 5825873 + gene protein_coding_gene FALSE TRUE AT3G17080.1 self-incompatibility protein-related similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G16970.1); similar to Plant self-incompatibility S1 [Medicago truncatula] (GB:ABE83730.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) -0.106992237705192 -1.00246879028815 0.337889306781402 1 -0.124960632697372 2.3464527964383 -0.106992237705192 0.114565134916338
AT3G32140_at 1.18779110452228 0.923666646050014 1.27015283699462 1.14942147338682 1.04597636782901 1.13067920972881 1.19131968705173 1.10056790010407 1.51166991943348 1.27965031846750 0.956715810788776 0.907286720258133 0.824542436507908 0.820637389561826 1.50660448668808 1.04408368578602 1.19666777168474 0.883365048654292 0.9318475995083 0.19002092042343 0.184236967898958 0.188667975869779 0.18527632119113 0.183174103990865 0.185939142029777 0.187538019666876 0.182522758276824 0.189931019481377 0.183938124597152 0.183130846225403 0.184287007406020 0.192709906416469 0.198455512373111 0.187314562174236 0.185817580884718 0.190773429325464 0.195450549200719 0.188427136832299 3 3|0 -|/ 13141942 13142633 13142423.25 13141934 13142722 - gene protein_coding_gene FALSE TRUE AT3G32140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31410.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) -0.0876734447545415 -1.00146007915413 0.338354952637662 1 -0.125891587481331 2.25421883548058 -0.0876734447545415 0.054655761618568
AT3G49500_at 5.71696058233901 6.1268929359603 5.3521668133232 4.67145229307944 5.4365381817543 5.36936553794592 4.88940254182731 4.80634434245745 6.13262005003476 6.12733735215616 6.47018383748566 6.52399544701802 5.93971423568259 6.24738946163171 6.12954228215023 6.2650719111364 5.44005823861312 6.6671241771932 6.54040710244093 0.231402740428993 0.227991611418555 0.226836399752215 0.236472241684731 0.216671106260238 0.225170961927345 0.227741814522884 0.229918293445167 0.219836600744693 0.223270151319342 0.216572135935230 0.214752341605811 0.219926430246746 0.224885320433055 0.220128345687788 0.214752341605811 0.241850046477003 0.232716655172411 0.227328467536427 3 3 - 18360178 18360707 18360455 18360178 18364190 - gene protein_coding_gene FALSE TRUE AT3G49500.1 RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance. similar to RDR1 (RNA-DEPENDENT RNA POLYMERASE 1), RNA-directed RNA polymerase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G14790.1); similar to putative RNA-dependent RNA polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAC00725.1); similar to RNA-binding re (GB:ABE88477.1); similar to putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] (GB:AAU21242.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA dependent RNA polymerase; (InterPro:IPR007855) -0.116961306733524 -1.00135083302961 0.338405411571 1 -0.125992366379736 11.5347269621231 -0.116961306733524 0.138749227132907
AT4G02410_at 8.98620928758023 9.2716105516659 9.37542863380224 9.49226758194009 9.39089873738307 9.05921739000938 8.95574680891656 9.11132110532792 8.96878303271533 8.68177554155739 8.40436718024667 8.51125476025304 8.40038925631659 8.6038482041589 7.30590182300323 8.47830992386069 8.53463900403283 8.3972635043591 8.65544212291765 0.149041706226062 0.149503625587201 0.147810558823210 0.156525127437315 0.148558267435867 0.150323589075055 0.147341419627408 0.147062281753471 0.15770860993944 0.144694599697851 0.152729133450756 0.148307794618942 0.146799506731663 0.152082877321430 0.156388892388974 0.144360497734508 0.16551555263904 0.159268127617547 0.157440232781513 4 4 - 1060091 1060586 1060325 1059889 1062153 - gene protein_coding_gene FALSE TRUE AT4G02410.1 lectin protein kinase family protein similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to RLK (RECEPTOR LECTIN KINASE), kinase [Arabidopsis thaliana] (TAIR:AT2G37710.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G02420.1); similar to receptor kinase Lecrk [Gossypium hirsutum] (GB:AAP47579.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.095469522311767 -1.00130325354520 0.338427389453676 1 -0.126036255359079 17.7544193151243 -0.095469522311767 0.082871522069063
AT3G60650_at 0.814924069076707 1.12010647513691 1.15978492320045 0.954553016310366 0.824619822559605 1.03342368464267 1.24565911414859 1.17091019907466 1.15754245194590 1.00493261254562 1.26370596122620 1.11015617240506 0.99379356340785 0.988743110770509 1.42103212931538 0.86219735007692 1.07206027760756 1.47672086644057 1.55577959432614 0.179521980878084 0.175057675825725 0.183195293089657 0.181005906770671 0.181613124888120 0.175966325580214 0.183672045713354 0.175440637892039 0.180818673897236 0.182050863936686 0.175057675825725 0.184878392325201 0.180627182256598 0.178313243822149 0.179532620890296 0.177664748404082 0.178450033052902 0.187133393530642 0.179919103589066 3 3 + 22430931 22431207 22431078.364 22430926 22431249 + gene protein_coding_gene FALSE TRUE AT3G60650.1 unknown protein -0.0928358216902865 -1.00126947344824 0.338442993768261 1 -0.126067414265634 2.23448236227482 -0.0928358216902865 0.074321465879609
AT2G15670_at 1.61283798100896 1.15524077849400 1.41437825741252 1.51568613806788 1.1311306413343 1.36619204409333 0.814900344525387 1.07674169277265 1.36375691496039 1.35465155458988 1.33693978367584 1.13605058322934 1.30820431322624 1.29820615506637 1.37380313794091 0.761921452065918 1.76722683627571 1.17233853813428 1.05431802792699 0.164564656641157 0.155925967219700 0.162116900711105 0.162570537274438 0.163040561602138 0.155925967219700 0.160040302273760 0.162425186433900 0.164116733594675 0.160663276249761 0.165365221925595 0.158932007987392 0.165966037777894 0.166388013824457 0.159617877723741 0.162574154415686 0.164824642460677 0.165781114434056 0.163008061631366 2 2 + 6835215 6836631 6835908.545 6835215 6836703 + gene protein_coding_gene FALSE TRUE AT2G15670.1 similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT3G51670.1) 0.101838710909747 1.00114401806511 0.338500951011492 1 -0.126183127322791 2.52434440926908 0.101838710909747 0.101421437592017
AT1G50300_at 6.67915635296211 6.0574675556529 6.3563534750202 6.34785807958647 6.35996397305492 6.61517711121187 6.2018859060202 6.10009363954967 7.23332175606108 6.7223439459796 6.70668065273491 6.82407447902274 6.58640279140415 6.81003073599959 6.18574286424993 6.35707664546977 6.61361498978967 6.5522461159391 6.91151230390015 0.195435184465416 0.198938651380629 0.196469172370842 0.195627464759399 0.208622814686958 0.206636671500562 0.202012923785678 0.197090288227644 0.202611321952411 0.198246524476012 0.204233715756304 0.195435184465416 0.199153642534383 0.20778579156343 0.199257145381334 0.195485271881853 0.206373509743682 0.199508874223237 0.198948177162918 1 1|0 -|/ 18632493 18634561 18633471 18632223 18635614 - gene protein_coding_gene FALSE TRUE AT1G50300.1 zinc finger (Ran-binding) family protein / RNA recognition motif (RRM)-containing protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G58470.2); similar to RNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33184.1); similar to Os07g0296200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059411.1); similar to Os09g0299500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062815.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.108027523240950 -1.00072595802191 0.338694136814873 1 -0.126568636993823 13.1073493422855 -0.108027523240950 0.117634478167226
AT2G18210_at 1.92343197891919 1.83076172862008 2.10430461982966 2.39544757324386 1.39725666707361 1.91287676913568 1.83544143021810 2.21476569279722 1.93644860734149 2.49617859199456 2.3974520165195 2.69725976959553 2.75811072088171 2.4852577504744 2.44705464641451 1.79575325131719 2.50891927041105 2.69130581144758 2.3289385832204 0.194664893477450 0.210405947803438 0.196286350597359 0.20556444211956 0.195199155899808 0.199858016580106 0.207443893704666 0.195397639620509 0.195065159007056 0.205226760593872 0.200712983492834 0.199686181793637 0.201530777787513 0.19707717763235 0.195460419580154 0.196274764085547 0.207472102855672 0.203880670036940 0.200520123343634 2 2 - 7932475 7932794 7932660.273 7932280 7932948 - gene protein_coding_gene FALSE TRUE AT2G18210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36500.1); similar to hypothetical protein [Thellun (GB:ABB45855.1) 0.110077546731295 1.00050581403415 0.338795897975018 1 -0.126771587504014 4.31503301522209 0.110077546731295 0.122747244910493
AT2G17480_at 3.5774621618895 4.15821749779926 3.17046249334022 3.13050437677765 3.30100345990974 3.16086458868954 3.72322961740933 3.97339833644542 3.69636125551504 3.84265918776039 5.15394781615301 4.80035830117491 4.47685085990529 4.70918887765048 5.15446222682043 4.64896449494237 4.40319539284402 4.08207028811298 3.85943208413863 0.239184439840433 0.23853701583709 0.23513418579269 0.240008163973125 0.234249718765680 0.233154942669341 0.244618500386659 0.234347623821068 0.252545914047100 0.237260087274737 0.236376990657722 0.236556579767948 0.235705177911116 0.234557548522238 0.243691320407506 0.231897741261637 0.241259430527676 0.234986287428373 0.243946634645442 2 2 - 7597660 7598317 7597921.545 7597377 7601172 - gene protein_coding_gene FALSE TRUE AT2G17480.1 MLO8 (MILDEW RESISTANCE LOCUS O 8); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO8 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO9, and AtMLO10. The gene is expressed during seedling growth, in cotyledons and hypocotyl, and in fruit abscission zone, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 8 (AtMlo8) (MLO8) [Arabidopsis Thaliana] (GB:O22757;GB:Q94KB5;GB:Q9SHM0); similar to MLO10 (MILDEW RESISTANCE LOCUS O 10), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G65970.1); similar to Mlo-related protein [Medicago truncatula] (GB:ABE78077.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.105888716344580 1.00046497953050 0.338814776114828 1 -0.126809228772817 7.76344979553514 0.105888716344580 0.112298570580471
AT4G30190_at 10.2775071811005 10.3117736625291 9.840333677043 9.67309196700837 9.56178008308738 9.48771461628307 9.29538625842862 9.37101017047658 9.75791501172668 9.50292122246253 10.0435059941682 10.7040398370019 9.5075135605346 9.71192779767848 10.3496959133824 9.87972786017847 9.09117570570596 10.1352226309254 9.50064878942066 0.122003505320075 0.115254134294661 0.126527574593058 0.115455362871108 0.119233798345257 0.115254134294661 0.117457235345641 0.120348624949501 0.14110033357487 0.120895433919537 0.125071569557167 0.117358951991079 0.120619701190085 0.124906818063256 0.123376813492494 0.118244536344314 0.133317255598612 0.115934790849474 0.120618350578995 4 4 - 14770834 14771544 14771213.182 14770505 14776062 - gene protein_coding_gene FALSE TRUE AT4G30190.1 AHA2 (Arabidopsis H(+)-ATPase 2); ATPase belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom Identical to ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) (AHA2) [Arabidopsis Thaliana] (GB:P19456); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to plasma membrane H+-ATPase [Lycopersicon esculentum] (GB:AAB17186.1); similar to H(+)-transporting ATPase [Solanum tuberosum] (GB:CAA54045.1); similar to plasma membrane proton pump H+ ATPase (GB:AAA32813.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.0837501278160355 1.00026996683826 0.338904942784 1 -0.126988974245532 19.4848311204863 0.0837501278160355 0.0347614446032917
AT3G24620_at 2.08819916009624 1.33077047571999 1.84395191546791 1.95328867436068 1.59609828289459 1.58149345546922 1.97762372006247 1.74584288117628 2.3052405474603 1.95061030007702 2.07547473317843 1.80273802519728 2.29003090019720 1.94911279587255 1.93022678651527 1.64595096265152 1.90747390556971 2.14554001192582 2.22347314458309 0.151439418148764 0.153045136682788 0.162593303024632 0.155789704496606 0.152608451533389 0.151443091330289 0.155513474236300 0.159968605258799 0.156559647152827 0.154883743726347 0.163497563650963 0.156532903482269 0.157576460743796 0.158747980130552 0.152351596291226 0.157605196867763 0.152472245443899 0.157073911061669 0.158429503999375 3 3 - 8980758 8981334 8981041.636 8980702 8982800 - gene protein_coding_gene FALSE TRUE AT3G24620.1 ATROPGEF8/ROPGEF8 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF9/ROPGEF9 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT4G13240.1); similar to Protein of unknown function DUF315 [Medicago truncatula] (GB:ABE82772.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.116678563058652 -1.00023825067973 0.338919608827709 1 -0.127018204687756 3.82870516024523 -0.116678563058652 0.138399205253941
AT1G42960_at 10.1738401575388 10.4152651164782 10.2348520099692 10.3878819081561 10.2518074675489 10.2960054690514 10.4409188192174 10.7352980625103 10.0109037005263 10.5808382868611 10.9158928668111 10.6377260884679 10.5277723749527 10.6768823582791 10.6952379552760 10.7750115545462 10.6515882407814 10.6787298906188 10.4954271010993 0.0986661766540643 0.0939258664693474 0.100150720344700 0.0988504475213009 0.100614750508201 0.108520256182407 0.100681282605451 0.097311888903739 0.107768074991250 0.0941200311262306 0.0995127668972368 0.0939258664693474 0.0984491396169979 0.101293860754361 0.103753571897174 0.0939258664693474 0.102003462003456 0.098447030284841 0.0951375283334176 1 0|1 /|+ 16128683 16129482 16129096.5 16128222 16129727 + gene protein_coding_gene FALSE TRUE AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16660.1); similar to hypothetical protein [Plantago major] (GB:CAH59416.1) 0.0918858223998056 1.00011082781856 0.338978535824835 1 -0.127135633288041 20.8956060574982 0.0918858223998056 0.0714187105594092
AT1G53730_at 7.67012418989488 7.73917811156847 7.23122123903201 7.4757276263321 8.19830224417255 7.89056011752115 8.0301992516691 7.60685639241037 9.26557653673572 7.91589665173127 9.7536680803623 8.6479615543504 8.50584375697923 8.9092832812319 9.04750123657471 8.34231404152728 7.78274999126956 8.90649709728402 8.23286620500868 0.160790634295962 0.158788668505877 0.16466673001535 0.163945624315239 0.164473490023468 0.163733521718037 0.162258626772425 0.164493917207596 0.161973175039257 0.159949568189334 0.158898370988193 0.157870635212311 0.161548584262761 0.156112343376861 0.163063926046330 0.155588732846781 0.184683550930299 0.158034918017803 0.157844461357406 1 0|1 /|+ 20068337 20069113 20068839.556 20065369 20069381 + gene protein_coding_gene FALSE TRUE AT1G53730.1|AT1G53730.2 leucine-rich repeat transmembrane protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT4G22130.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G14350.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to kinase [Arabidopsis thaliana] (TAIR:AT4G22130.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G14350.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.101447117917145 0.999956105784931 0.339050097483003 1 -0.127278203422967 16.3344830687947 0.101447117917145 0.100680968144983
AT1G21430_at 1.21088544578085 0.852090084734441 0.974077799952486 1.00079203819386 0.914517765479546 1.01735797838436 1.11695830184401 1.00674295906715 1.34424266600788 1.05780896100359 1.07907005387935 0.840405037524371 1.15257052365021 0.78621995566501 1.10588976313645 1.03396788325370 1.49991077000139 0.652915158489927 0.989021701873738 0.222708705597150 0.222959981919874 0.225390320152281 0.226194774645359 0.222708705597150 0.225343426005427 0.225695425177938 0.224853663540131 0.233069589684548 0.226015580983238 0.237703288330251 0.226031936867819 0.229502417282399 0.226158985217741 0.223669126529767 0.222708705597150 0.227236561241528 0.229527962252719 0.223862135064349 1 1|0 +|/ 7501413 7502009 7501700.6 7500834 7502175 + gene protein_coding_gene FALSE TRUE AT1G21430.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G48910.1); similar to Os12g0189500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066335.1); similar to hypothetical protein, similar to flavin-containing monooxygenases [Oryza sativa] (GB:AAF34432.1); contains InterPro domain Monooxygenase, FAD-binding; (InterPro:IPR002938); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.0907359677245336 -0.99949317891921 0.339264275416281 1 -0.127704664098886 2.08629100642715 -0.0907359677245336 0.0675071344084607
AT3G52390_at 3.67432951506985 3.94458839465494 3.02323848224229 3.69775238212168 3.12632951879265 3.06878293397131 3.57447168832246 3.14870556507696 3.41544882324685 3.74857747226951 3.29112912753598 3.88743429786236 3.6614559942738 3.97278768817261 3.93105960342123 3.53521337104549 3.95787413968328 3.5925922366916 3.67244005870648 0.237856910568095 0.236226667075841 0.2406601356763 0.237793871361607 0.257944013195532 0.237879621529009 0.244763791144421 0.236226667075841 0.245558313671083 0.237037497038515 0.237522177656984 0.238245349069951 0.237447254095028 0.250783422629078 0.239864711517926 0.241855583617847 0.236226667075841 0.250590344397562 0.239768749102159 3 3|0 -|/ 19434263 19435170 19434695.667 19433966 19436192 - gene protein_coding_gene FALSE TRUE AT3G52390.1|AT3G52390.2 tatD-related deoxyribonuclease family protein similar to tatD-related deoxyribonuclease family protein [Arabidopsis thaliana] (TAIR:AT3G03500.1); similar to LOC494648 protein [Xenopus laevis] (GB:AAH82480.1); similar to Os07g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058926.1); contains InterPro domain Mg-dependent DNase, TatD; (InterPro:IPR012278); contains InterPro domain TatD-related deoxyribonuclease; (InterPro:IPR001130) -0.119980052785444 -0.99944635611622 0.339285943993678 1 -0.127747789522154 7.07769918940322 -0.119980052785444 0.146084918751902
AT2G33640_at 1.11298584833783 0.589703955286166 0.88427190689101 0.622674453269237 0.651613165878979 0.578227326295279 0.739415862371904 0.812465327039318 1.00727959320002 1.38399662065413 1.09371920598004 0.930671982852646 1.07439978140366 0.714539827475712 1.09784621067782 1.14014404393786 1.26089558181154 1.07476491885660 0.978471556067384 0.220136128293337 0.223275429529409 0.228595635649057 0.223093463661124 0.222720906989644 0.230661070687014 0.231500464358082 0.221075578337458 0.230855545075282 0.219594037924352 0.222799762388224 0.223966691978951 0.225454126924513 0.226679519901342 0.218949673826570 0.221493629656616 0.225561917018851 0.221131801167435 0.233086662418381 2 2 + 14248791 14249266 14248975.182 14246339 14249441 + gene protein_coding_gene FALSE TRUE AT2G33640.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT4G15080.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE83246.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) -0.102161298845602 -0.999274911116361 0.339365293675160 1 -0.127905682189794 1.83473070605371 -0.102161298845602 0.102815280362385
AT1G73490_at 8.51293764294597 8.47861860223896 8.89351999992333 8.56267356185435 8.6918034473393 8.1281079572571 8.43037152961278 8.37948506475415 8.24605399361101 7.96373962969065 7.9543925090364 8.59935783132005 8.03283293307111 8.20875243384125 8.5248601439398 8.38222068278958 8.08058492430883 7.87152764313774 8.12906161908004 0.170459238819729 0.164198573247806 0.182928428629864 0.166742087573625 0.171770974396401 0.161348217322445 0.165672200108420 0.163996760029821 0.167970984491318 0.169169265055371 0.170726089101889 0.160303595351128 0.168215043686545 0.171741882545619 0.170229313745622 0.165216023233510 0.175230107335183 0.172748720810210 0.161040374839709 1 1 - 27637159 27637860 27637464.818 27636926 27638593 - gene protein_coding_gene FALSE TRUE AT1G73490.1 RNA recognition motif (RRM)-containing protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G51730.1); similar to Os04g0620700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053909.1); similar to H0714H04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66982.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.106268710962791 0.999214639749575 0.339393192229005 1 -0.127961183975664 16.6695736683113 0.106268710962791 0.113608666773937
AT3G19190_at 6.91739947055344 6.94758931077109 6.98192510010316 6.73603911757008 6.71131834506638 6.55826575385323 5.60305644171574 5.2660508704607 6.45885290144389 5.86351542741972 5.7452463948881 5.52960569934718 5.65282943090401 6.02223130230021 5.55550461197794 6.24954383909161 5.62868987247813 6.00979159113597 6.20449017829801 0.216958635298903 0.216076000632178 0.221997078664506 0.218779567757222 0.221963562594414 0.224499513210849 0.222705836884896 0.231323225545974 0.216576420090359 0.212052645553954 0.214148030002153 0.211776142575504 0.218665275196829 0.219148114808887 0.218330582059037 0.211776142575504 0.223818808412078 0.215798103960298 0.216336810849918 3 3 + 6647067 6648177 6647821.455 6639717 6648242 + gene protein_coding_gene FALSE TRUE AT3G19190.1 similar to unnamed protein product; gene_id:MVI11.11 unknown protein-related [Medicago truncatula] (GB:ABE80517.1); similar to Os06g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057350.1); contains domain FAMILY NOT NAMED (PTHR13190); contains domain RecG, N-terminal domain (SSF69008); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11 (PTHR13190:SF3) 0.0934619480755738 0.99915220003708 0.339422096244086 1 -0.12801867962451 12.4526054738380 0.0934619480755738 0.0770762225264426
AT3G17310_at 5.5793455329398 5.24421610451759 4.94469243980183 5.05463187957804 5.16148172057968 5.22109351556986 5.37870549383307 5.39297480067335 5.26212142989912 5.46354420832671 5.51240595457057 5.4039734160606 5.81982515922097 5.63921394079673 5.27950033664069 5.68058310084313 5.65062603054131 5.30282891679817 5.50804391558077 0.203448297693756 0.201932344228455 0.211018323624595 0.211769876836812 0.203479012013937 0.204135681074423 0.199214797164695 0.202871978032624 0.215648418966149 0.21097946493421 0.203582547155395 0.202753004663556 0.199165986020850 0.202519052845404 0.221746287120705 0.199165986020850 0.215163986299566 0.204297556487906 0.199165986020850 3 3 - 5909388 5909866 5909611.182 5909007 5913248 - gene protein_coding_gene FALSE TRUE AT3G17310.1|AT3G17310.2 methyltransferase family protein similar to DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G14620.1); similar to Os05g0133900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054563.1); similar to putative DNA methyltransferase DMT106 [Oryza sativa (japonica cultivar-group)] (GB:AAT85176.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525) -0.0892262525550549 -0.999018470635482 0.339484007091523 1 -0.128141810248326 10.7208207483714 -0.0892262525550549 0.0619515377733726
AT1G54460_at 6.53190658653263 6.242957048122 5.52564662049609 5.52347559561837 6.78593017750944 6.2975611461686 6.35351989289221 5.48175297155754 6.54861998634567 6.37881461509797 6.55198341003978 6.61350319462662 5.78841622516924 6.24101010527606 6.60470899939444 6.34692570565299 5.87168605321827 6.62115816005608 6.51844232621035 0.162617401101346 0.165741339727736 0.166877783703658 0.175734986324189 0.173077804640602 0.164490086128418 0.180540766475150 0.168345942886663 0.174581441967689 0.170870938996249 0.162071611154304 0.164764220280085 0.168244200467413 0.167704178459311 0.167150191650703 0.163211306746112 0.181168062302119 0.169555718553569 0.169803733731044 1 0|1 /|- 20344575 20345783 20344973 20344267 20347197 - gene protein_coding_gene FALSE TRUE AT1G54460.1 similar to WDL1 (WVD2-LIKE 1) [Arabidopsis thaliana] (TAIR:AT3G04630.3); similar to Targeting protein for Xklp2 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99369.1); similar to Os03g0799100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051574.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) -0.135707867016721 -0.998345196810092 0.339795829021628 1 -0.128761518469234 12.4987852336440 -0.135707867016721 0.180008332326914
AT4G32010_at 6.02885216069784 5.86950788321657 5.7183162395054 5.80938076665305 4.85472966422301 5.74942546950297 4.89166601536076 5.41793852339504 5.69054186952901 5.03847998473579 4.87637220434458 4.88038560328482 4.91402265354098 5.05252759097063 5.08818277846348 4.85601036177566 5.37933902830909 5.28467194902391 5.15946404744488 0.215765549932516 0.197160101266454 0.203598890925943 0.198697635110651 0.204799533015406 0.202721527013065 0.193215145843396 0.198344505131411 0.193161895391867 0.193161895391867 0.198819946443153 0.195321710632961 0.207361114528943 0.193161895391867 0.193381362961884 0.201291760573036 0.208005740084099 0.199368287937936 0.196018901558469 4 4 + 15484342 15484822 15484568.909 15479530 15485359 + gene protein_coding_gene FALSE TRUE AT4G32010.1 transcriptional factor B3 family protein similar to HSI2 (High-level expression of Sugar-Inducible gene 2), transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT2G30470.1); similar to Transcriptional factor B3 [Medicago truncatula] (GB:ABE94132.1); similar to Os07g0679700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060642.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.136875528359432 -0.9983038877123 0.339814967861529 1 -0.128799529878828 10.7112775845447 -0.136875528359432 0.182416910744677
AT1G47920_at 0.778785580519985 1.1147431769654 1.00137599006697 0.93942792135315 1.05807292108011 0.791644601750328 0.638690450980842 0.8013850184121 0.743241252258498 1.13167779943478 0.954017290842462 0.976865825496498 1.12213232960401 0.640806799773758 0.761886795149204 1.26398377319566 1.02475718760423 1.22879005911704 0.892023827313253 0.202779369492757 0.195913814499308 0.207314105648185 0.195330215484824 0.195883532358023 0.202529721155969 0.20466143081884 0.201027817715428 0.200229424915717 0.196822787741329 0.198523558152671 0.202873041489858 0.202477456891422 0.204135998571376 0.200293574550559 0.210971825577155 0.210397221153450 0.198860818926501 0.202778861087518 1 1|0 +|/ 17665306 17666038 17665698.667 17664764 17666063 + gene protein_coding_gene FALSE TRUE AT1G47920.1 syntaxin-related family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G48400.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0942850082193698 0.998085803686607 0.339916021045103 1 -0.129000182994182 1.85000035794113 0.0942850082193698 0.080084987027972
AT1G77180_at 9.38593892808525 9.60760759901635 9.52173241675098 9.64585564144054 9.6543359827277 9.63988107347432 9.0728349527638 9.25926832788194 9.378009732872 9.62861200639136 9.59387070199717 9.52229012983674 9.48498172026627 9.50976792259479 9.07533927390864 9.62826782834905 9.59403493648856 9.3984072992473 9.74906143191668 0.102277229328860 0.0967467019876685 0.104913824298836 0.103114198434738 0.0937128329029873 0.0956997842168163 0.0955330553920874 0.0973779268784895 0.0945441523869342 0.0926526738117414 0.101218890655871 0.0939186441324075 0.0987484363608064 0.101185946079353 0.100904577468737 0.0918714020330593 0.0933828483112477 0.101539785015072 0.0957963198031991 1 1 - 29004691 29005251 29004975.636 29004502 29007029 - gene protein_coding_gene FALSE TRUE AT1G77180.1|AT1G77180.2 chromatin protein family similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G16940.1); similar to Os02g0759800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048184.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAO25542.1); similar to GAMYB-binding protein [Glycine max] (GB:AAZ38969.1); contains InterPro domain SKIP/SNW; (InterPro:IPR004015) 0.0873405397604632 0.997828246425811 0.340035393207525 1 -0.129237108102335 19.0039807154240 0.0873405397604632 0.054590428297639
AT2G45890_at 0.418040115285061 0.338223114907797 0.607881473271444 0.306638090057735 0.123195862951199 0.475305558410675 0.0861664891142143 0.543647370566329 0.44292679358001 0.00361157443919128 0.113197023633259 0.64236054637487 -0.21793367567018 0.589967099656087 0.38805949390301 0.510173508053683 0.122145912488874 0.568258323850387 0.0307811424615394 0.202420044500862 0.199354209721746 0.20304097618737 0.208498966444123 0.204672915255661 0.201550165150830 0.204250063849758 0.200900210029611 0.211374366379120 0.211637136624104 0.208587735392508 0.206443718060571 0.210421329775797 0.203803599393839 0.200393290114199 0.200225907437718 0.205482634718205 0.213552178264686 0.201053404353672 2 2|0 +|/ 18891743 18892243 18892048.2 18890546 18892639 + gene protein_coding_gene FALSE TRUE AT2G45890.1 ATROPGEF4/ROPGEF4 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF2/ROPGEF2 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor/ / protein binding [Arabidopsis thaliana] (TAIR:AT1G01700.1); similar to Protein of unknown function DUF315 [Medicago truncatula] (GB:ABD32835.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) 0.106078999623541 0.997717780897268 0.34008660097138 1 -0.129338709214613 0.611704775585471 0.106078999623541 0.113530760861358
AT3G27010_at 2.57267766954629 2.85330179151631 2.55547737550784 2.82655013852419 2.83366387604806 2.73390819997085 2.47693512916918 2.80427357923555 3.3825878955696 3.43584416220073 3.28949162112515 3.14087485052865 3.20660140104444 3.32796542459443 3.07191008684919 2.93612431098968 2.97870833620253 3.32822556357573 3.42773314993944 0.216320621704284 0.210942343855131 0.220600349498058 0.215802613036888 0.216644029366999 0.213398725897599 0.211153275196132 0.216321068327962 0.212445828563701 0.212575037080738 0.217563462073525 0.210942343855131 0.212404635449742 0.218720911891287 0.212229140382175 0.215525384408089 0.214072385992223 0.215792232957475 0.214369500869628 3 3 - 9959126 9959615 9959430.636 9958619 9960135 - gene protein_coding_gene FALSE TRUE AT3G27010.1 AT-TCP20 ("Arabidopsis thaliana teosinte branched 1, cycloidea, PCF (TCP)-domain family protein 20"); transcription factor Belongs to a TCP protein transcription factor family. Members of this family contain a predicted basic-helix-loop-helix domain involved in DNA binding. Related to rice PCF1 and PCF2 genes. Binds to the GCCCR element of CYCB1;1. Involved in regulation of expression of cell cycle control and ribosomal protein genes. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G41030.1); similar to Os01g0924400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045247.1); similar to TCP-domain protein-like [Solanum tuberosum] (GB:AAU89787.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.0973989240301474 -0.997654748823432 0.340115822856972 1 -0.129396679087841 5.9947865209066 -0.0973989240301474 0.0898105349406017
AT1G19200_at 4.61391350182957 5.04147973438196 4.15460230324214 4.36130051098391 4.10355166314263 4.60956830518509 4.14329883194242 5.04323662191897 4.20509816485899 4.02805416932393 3.68297326122948 4.00882740912513 4.78604905589608 4.53816626920823 3.92592485430289 4.16146988727841 4.26156139957287 4.25066174681359 4.02584720126969 0.232106169852817 0.245638340820645 0.238098017640832 0.230266602403928 0.23760844326941 0.234708109628307 0.237186722224054 0.246866371063320 0.232694063768074 0.230266602403928 0.237317089431574 0.233307400169698 0.237356538182565 0.233382302597259 0.235499247639663 0.230266602403928 0.236462015112071 0.230572386981634 0.241141843591112 1 1 - 6625096 6625747 6625502.636 6625011 6625847 - gene protein_coding_gene FALSE TRUE AT1G19200.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G74940.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE90961.1); contains InterPro domain Ferrochelatase; (InterPro:IPR001015); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) -0.143802709967830 -0.997472894394277 0.34020014149721 1 -0.129563911698466 8.6530126410346 -0.143802709967830 0.196664873657370
AT4G04670_at 3.53189847990711 3.33782091173902 3.3374879964494 3.42909788896632 3.51005370830373 3.13494321579532 3.17207216214391 3.54059146531597 3.11312471093895 3.64920108212757 3.14358446646973 3.20625214514949 3.45366422555635 3.50548925832536 3.25243143758357 3.33139221547455 3.16005322936572 3.11986830199587 3.52586769732365 0.195193447113826 0.199849444114281 0.198597973180259 0.198181161489301 0.199460207275572 0.202461240970304 0.199153549686468 0.197793265353566 0.199115322577238 0.206258975752756 0.197921045376561 0.202237082716647 0.198898304797987 0.195075289501347 0.195075289501347 0.198444092790117 0.203053589660906 0.197164593884288 0.195075289501347 4 4|0 +|/ 2370813 2371721 2371189.2 2367564 2372214 + gene protein_coding_gene FALSE TRUE AT4G04670.1 Met-10+ like family protein / kelch repeat-containing protein similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G18610.1); similar to Os07g0515000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059774.1); similar to MET-10+related protein-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL55396.1); contains InterPro domain Protein of unknown function DUF207; (InterPro:IPR003827); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Protein of unknown function Met10; (InterPro:IPR003402); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.100252986268892 -0.996699329735664 0.340558983554495 1 -0.130274999553426 6.72474059863766 -0.100252986268892 0.0982872541573933
AT2G45810_at 9.34587869916572 9.57645774885737 9.62918716450826 9.58657430342828 10.1721729026698 9.57927134710008 9.91297667407424 9.77847529042958 9.29504829973436 9.26032849921813 9.5058181058589 9.37304842749464 9.613883554187 9.4686982916022 9.11981499144026 9.63747253794927 9.41281264716483 9.31928303511133 9.3699247810051 0.129404498295611 0.128750810605292 0.129577495115009 0.131796990162951 0.131387855757001 0.138067206063603 0.130750596133244 0.128447335289510 0.149403972678647 0.135151172746820 0.127055015719960 0.131312921231908 0.128647080587796 0.128207942123926 0.136334986963143 0.128236057329577 0.142744678208883 0.132398074213341 0.129856963501364 2 2|0 +|/ 18868450 18869341 18868762.6 18866673 18869992 + gene protein_coding_gene FALSE TRUE AT2G45810.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 6 (EC 3.6.1.-) (RH6) [Arabidopsis Thaliana] (GB:Q94BV4;GB:O80838;GB:Q9SB95); similar to DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana] (TAIR:AT3G61240.2); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G00660.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84720.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84723.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84719.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.105637207580036 0.996372233216139 0.340710800766035 1 -0.130575542178287 19.0675181706976 0.105637207580036 0.112765455971107
AT1G63560_at 0.0558489323718136 0.0817051110238849 0.504238891555256 -0.276228788252948 0.181618149987228 0.299508373367102 -0.0388416516397077 -0.103448318358922 0.39786508625938 -0.0557417013849257 -0.0793742677979315 -0.0722473843220087 -0.246477433065218 0.241038047463206 0.246483085550052 0.493351295682371 0.418396376196950 0.0284658220100413 -0.114553724657805 0.207634486116910 0.207634486116910 0.207634486116910 0.219734681579856 0.207634486116910 0.208350493007648 0.212396860162968 0.211966793906552 0.210543448711815 0.212761602447371 0.208523528254417 0.209270088962176 0.212908180145483 0.209015199998207 0.209827525112661 0.212689370811825 0.210018842332492 0.215621157848776 0.213479430817977 1 1 + 23577151 23577844 23577399.545 23576757 23577941 + gene protein_coding_gene FALSE TRUE AT1G63560.1 similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G63600.1); similar to Protein kinase [Medicago truncatula] (GB:ABE84759.1); similar to Protein of unknown function DUF26 [Medicago truncatula] (GB:ABE89786.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 0.115658013812012 0.996223054715867 0.340780056292841 1 -0.130712583429854 0.190330585566830 0.115658013812012 0.137125535308866
AT3G03050_at 4.18254641823349 4.81209036480679 3.80850529950656 3.95405704812463 4.56095689091361 4.64704818347085 4.42675522153172 4.44373990917624 5.16521086706087 4.7873994238028 4.91754722774366 4.93580852597774 4.97716361431351 5.40072335374762 4.78950885309341 5.10592282190943 4.74266194741126 5.01422034678404 4.96662339357625 0.20908903568281 0.205606966791175 0.203445919847457 0.20947925531849 0.205377905049948 0.201573972734369 0.215096089777812 0.21675741774447 0.218376275430373 0.205563908417802 0.211300837162483 0.20002205253175 0.206665529657117 0.208193224919739 0.218555597765158 0.202297161797562 0.216306440347229 0.211398258159113 0.202852540499867 3 3 + 691185 691610 691396.636 687059 691905 + gene protein_coding_gene FALSE TRUE AT3G03050.1 CSLD3 (CELLULOSE SYNTHASE-LIKE 3); cellulose synthase/ transferase, transferring glycosyl groups encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. similar to ATCSLD4 (Cellulose synthase-like D4), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38190.1); similar to ATCSLD5 (Cellulose synthase-like D5), cellulose synthase [Arabidopsis thaliana] (TAIR:AT1G02730.1); similar to ATCSLD2 (Cellulose synthase-like D2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16910.1); similar to cellulose synthase-like protein D4 [Populus tremuloides] (GB:AAO03579.1); similar to putative cellulose synthase [Oryza sativa (japonica cultivar-group)] (GB:AAL58185.1); similar to cellulose synthase D-like protein [Nicotiana alata] (GB:AAK49455.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.105637215686934 -0.99607692805396 0.340847905001606 1 -0.130846804834843 9.33372365756343 -0.105637215686934 0.112845850890929
AT3G51540_at 1.13711068274968 0.904141231265342 0.815890767014719 1.55608184497332 1.13015181688218 1.13852446317788 1.08955068625911 0.89158009044569 1.23583151065582 0.576306867123386 1.24572083600422 1.14110332269966 0.565082085666636 0.995525401455067 0.927834806002787 0.852801451303764 0.811839761184 1.29240671707676 0.891027403155093 0.218236475479181 0.20686292848214 0.213341577686584 0.211889908835753 0.206288887789941 0.206288887789941 0.20733640993178 0.209167817913482 0.217812573064437 0.214079172475749 0.208533207169266 0.213505531947563 0.206288887789941 0.211652023746521 0.207029127877902 0.207453267523105 0.212569377147551 0.219613597566633 0.212086050832474 3 3 + 19127490 19128130 19127796.273 19126321 19128189 + gene protein_coding_gene FALSE TRUE AT3G51540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08670.1); similar to Os01g0819000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044636.1); similar to Os05g0480600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055856.1); similar to Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster] (GB:NP_523475.3) 0.116275293847376 0.99604343609643 0.340863457190858 1 -0.130877565856192 2.02292622683876 0.116275293847376 0.13859723793161
AT3G05400_at 1.80117985074481 1.75392389967161 1.87520037412684 1.88907907694448 1.87739538239898 2.17389860487768 1.96880662848454 2.28132980850635 1.81813824288788 1.69684086464028 1.58496573426574 1.61537819095770 1.22094257725442 1.20309816474573 1.62749934890165 2.0449957400831 1.67779453469552 1.42679562783188 1.69848822878738 0.219577323476956 0.226034112697828 0.218126379172317 0.218126379172317 0.218126379172317 0.227286183026620 0.219702790077184 0.223759950513219 0.234576474138470 0.220387541379909 0.232283202912406 0.218275937690891 0.224138658795734 0.224523056586203 0.226174703124914 0.22101735135116 0.224262563831724 0.232161667935955 0.218126379172317 3 3|0 +|/ 1551851 1553394 1552750.714 1549592 1554154 + gene protein_coding_gene FALSE TRUE AT3G05400.1 sugar transporter, putative Identical to Sugar transporter ERD6-like 12 (Sugar transporter-like protein 5) (SUGTL5) [Arabidopsis Thaliana] (GB:Q8VZT3;GB:Q9MA53;GB:Q9SCW6); similar to SFP1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G27350.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.0925276964306912 -0.995674215704387 0.341034941281137 1 -0.131216623794924 3.59660479585965 -0.0925276964306912 0.075036837939075
AT3G01175_at 1.75515956067532 1.93076555406666 1.24890718044700 1.64838804755106 1.74453210186787 1.45754356916690 1.32647937130063 1.46515900904692 2.00523531440777 1.46014974871767 1.50534224464392 1.38634796257516 1.56391664224604 1.70288901640715 1.96450584626058 1.70529130284249 1.74153282949719 1.74148984532507 1.83310936883262 0.221632077211054 0.225498896406142 0.225641256401054 0.2281906893114 0.228203948264394 0.224488609693148 0.221206904587615 0.224065520974287 0.222379277087762 0.226629787292063 0.224277207311661 0.224456380425012 0.221206904587615 0.221206904587615 0.227449177451670 0.228745483190827 0.221898287601407 0.221709030798488 0.222851982517878 3 3 + 60166 60812 60466.364 59478 60852 + gene protein_coding_gene FALSE TRUE AT3G01175.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39785.2); similar to hypothetical protein SDM1_29t00014 [Solanum demissum] (GB:AAT39968.2); contains InterPro domain Protein of unknown function DUF1666; (InterPro:IPR012870) -0.0983992492210801 -0.994950281477142 0.341371355055217 1 -0.131881119004555 3.28715643520399 -0.0983992492210801 0.0935162949694945
AT1G67990_at 0.86127602743942 0.397799405927805 0.385023291961896 0.458106185618226 0.389327079495138 0.75100474562424 0.575737683896637 0.712424086719411 0.888628919302427 0.518914092121212 0.360788779243019 0.61729204239889 0.361952454611008 0.490015722267402 0.332530963888324 0.280498147097086 1.07830410729238 0.886210049577716 0.438047677465112 0.192428727775388 0.193090322748008 0.193240388082501 0.200105340268185 0.198631702023123 0.190573847584200 0.19438964430325 0.191003185642914 0.196599906869509 0.19544268082316 0.198631798772836 0.194456247586401 0.195240381946594 0.193615430924820 0.191512977964048 0.190876924732779 0.192060444145574 0.195907360357956 0.199355065658152 1 1 + 25493362 25494383 25494091.273 25493118 25494530 + gene protein_coding_gene FALSE TRUE AT1G67990.1 caffeoyl-CoA 3-O-methyltransferase, putative Identical to Probable caffeoyl-CoA O-methyltransferase At1g67990 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) [Arabidopsis Thaliana] (GB:Q9C9W4;GB:Q8L5T6); similar to CCoAMT (caffeoyl-CoA 3-O-methyltransferase), caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] (TAIR:AT1G67980.1); similar to S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase (GB:AAA62426.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) -0.102595919160107 -0.994831950647466 0.341426366710945 1 -0.131989696527972 1.14941027813196 -0.102595919160107 0.105214616251978
AT2G23800_at 1.76758366191230 1.40936686587837 2.04472766418324 1.78053734075677 1.60465182670507 1.53614386829340 1.85828548282721 2.00932744955954 1.13174807551868 1.49253110806533 1.73941736120667 1.11559294385336 1.78714730301392 1.67319221607386 2.01513516488108 1.76033155363894 1.72882503793427 1.72665219619455 1.82886641293766 0.218012004839662 0.218883221877076 0.215132041830396 0.215132041830396 0.231116082839751 0.221918720915149 0.226418478785822 0.215132041830396 0.227699923595307 0.223062920515151 0.220580891028706 0.231650384049703 0.221298946808362 0.215132041830396 0.217742440078739 0.21644887123283 0.231477861655713 0.22087417012935 0.21928146375753 2 2 - 10138711 10139272 10138998.818 10138569 10139859 - gene protein_coding_gene FALSE TRUE AT2G23800.1 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2); farnesyltranstransferase encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase Identical to Geranylgeranyl pyrophosphate synthetase 2 precursor (GGPP synthetase 2) (GGPS2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] (GGPP2) [Arabidopsis Thaliana] (GB:O04046;GB:Q38917;GB:Q7DN59); similar to GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT2G18640.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.0946395832663135 0.994828972478024 0.341427751336807 1 -0.131992429087987 3.34016231381789 0.0946395832663135 0.0822005674716302
AT4G22580_at 4.53217091396922 5.44729503743605 4.12583839626335 5.12070199506081 4.26670562791167 4.48017440713421 5.013326849822 5.71571550162764 3.54269522846296 3.65249876488981 3.62496568150410 3.87060778971402 3.63948199933569 4.08848495736347 3.83918635914237 3.81130274279088 3.67827145637727 3.94861102113436 3.28386709328797 0.217554306586193 0.212246170691318 0.211546460663016 0.215055946475263 0.210151316109000 0.216386491757019 0.213900859899695 0.221263483245565 0.226510740696161 0.210780836833784 0.208028334888327 0.211557753734829 0.209587966325654 0.215506102942193 0.213322806034113 0.210876952872157 0.214662930779689 0.20902161535496 0.214184638992697 4 4 - 11889622 11889944 11889768.545 11889109 11890736 - gene protein_coding_gene FALSE TRUE AT4G22580.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT4G13990.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13471.2); similar to Os10g0553600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065337.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.179589165207264 -0.99442287203273 0.341616596098441 1 -0.132364975620280 8.49055827272004 -0.179589165207264 0.266196353719519
AT3G62320_at 2.14969791818733 2.37730935134424 2.46864679262965 2.56813248236411 2.18603109665651 2.73506640926187 2.17097145165669 2.59472001230152 2.69163303366011 2.54027050833319 2.84010154258306 2.17821393140931 2.34966031113882 2.73542022384133 2.6769911994648 2.75321940716229 2.60238518356299 2.34635718693174 2.27990624429547 0.213956427915925 0.217843526645358 0.223333997834602 0.220168294304693 0.216644761826967 0.211687708694466 0.220172597254012 0.215037040085455 0.215339175547078 0.222795708850220 0.215976303214377 0.20829867423662 0.219347313782287 0.214469689434791 0.22233575022419 0.211413040804365 0.20829867423662 0.214011735818035 0.222737514040825 3 3|0 -|/ 23072815 23073182 23073045.889 23072780 23073373 - gene protein_coding_gene FALSE TRUE AT3G62320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48350.1); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87676.1); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87673.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.111325769843896 0.994105984891078 0.341764007936742 1 -0.132655593396874 4.93843704864593 0.111325769843896 0.127487032808446
AT3G49430_at 6.96267527045104 6.90762937224959 7.04882487171558 6.73539173274041 6.42466851190563 6.79800480824542 6.71414945472531 7.11450017393576 6.34958984179407 6.10625847908463 6.11236372606338 6.08025702860038 6.37325490269357 6.50883397117728 6.79168656588055 6.46809781938753 6.40549514502895 5.76455992863296 6.5892162104878 0.191375366272589 0.182535693797935 0.182249793057821 0.189878995905419 0.180227627788863 0.189635048302846 0.200691444533351 0.185109099221663 0.191527221630579 0.185053889119043 0.182767008969281 0.187913926778131 0.192236167000223 0.187408013964958 0.18212671486193 0.185778515147744 0.187993045355949 0.191908787991190 0.180613540878839 3 3|0 +|/ 18344023 18345309 18344607 18342531 18346024 + gene protein_coding_gene FALSE TRUE AT3G49430.1|AT3G49430.2 SRP34A (SER/ARG-RICH PROTEIN 34A); RNA binding|SRP34A (SER/ARG-RICH PROTEIN 34A) similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to pre-mRNA splicing factor-like protein [Solanum tuberosum] (GB:ABA46766.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.104151147272212 -0.993946472108138 0.341838228830742 1 -0.132801854108619 13.1689422643570 -0.104151147272212 0.109576687004765
AT2G02510_at 9.69281647796815 9.76474955629186 9.50423416787057 9.63290040779813 9.42841137976627 8.84166519307372 9.50599482947175 9.7162003434625 9.5210690371129 9.58764623702932 9.68844647706196 9.88144105428531 9.34757309378068 9.6514329621283 9.62994116835275 9.51111779657047 9.27316467942933 9.67519757975892 9.31148393413642 0.110155427718191 0.107408373387840 0.117117001697753 0.111236701313667 0.113637759997145 0.126455250200492 0.115824832892318 0.110167375287507 0.120242748285608 0.109060263268485 0.110554478565931 0.112764981982335 0.111991579005687 0.114983485265959 0.10925575399767 0.108077191274225 0.117264999703092 0.108178480365028 0.1108924971218 2 2 + 673369 673514 673453.545 673304 674739 + gene protein_coding_gene FALSE TRUE AT2G02510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14450.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15588.1) -0.104623949671651 -0.99385757429876 0.341879597868446 1 -0.132883358071278 19.0387160882198 -0.104623949671651 0.110834293187329
AT3G26120_at 1.40209847695914 1.31882733610523 1.75511942318979 1.76358316739678 1.12101910704391 1.94226469486155 1.32852009308672 2.15381027040920 1.50589163421567 1.49155803772570 1.73757979099035 1.63033028435304 1.65085258429031 1.77122469877512 1.55487145725156 1.23271371493354 1.63937005071794 1.92443997309496 1.33898822095127 0.214737313447723 0.215857617672284 0.225497772854411 0.224104903657301 0.222004795422611 0.212450942485934 0.222397057436875 0.212450942485934 0.224491131986179 0.215345690257533 0.216873705640710 0.217331703929785 0.219859279745807 0.227466850666618 0.214599183224671 0.212450942485934 0.216380696006461 0.215211220155352 0.212450942485934 3 3|0 +|/ 9549607 9550380 9550111.7 9547635 9550423 + gene protein_coding_gene FALSE TRUE AT3G26120.1 TEL1 (TERMINAL EAR1-LIKE 1); RNA binding Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. similar to TEL2 (TERMINAL EAR1-LIKE 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G67770.1); similar to leafy head 2 [Oryza sativa] (GB:ABD49441.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.145938037826457 0.993750759895214 0.341929309321775 1 -0.132981280550277 3.14223137959741 0.145938037826457 0.202004086481718
AT2G22970_at 5.99059798986625 6.66245191318447 6.06475640243852 6.20166156761763 6.60081836570562 6.16460001655278 6.96705876123433 7.37532860921201 5.21544153511644 5.8579521364332 5.94719520853714 6.44718411900581 6.69165414862479 6.63764926429467 5.79738441379766 7.15171178257937 6.4287665937905 6.37401334676877 6.01093823752203 0.237647279435216 0.231400055040489 0.235750565419967 0.231515609464767 0.235907867035776 0.235519405135913 0.228585772277955 0.249696240651929 0.239241779808922 0.232035552405667 0.227944014697007 0.230664126855198 0.233693213443563 0.241840706738818 0.232672304278259 0.226556723601997 0.235264439256566 0.227573221938876 0.233559372679679 2 0|2 /|+ 9783895 9785279 9784526 9781933 9785608 + gene protein_coding_gene FALSE TRUE AT2G22970.1|AT2G22970.2|AT2G22970.3 SCPL11; serine carboxypeptidase|SCPL11 similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.1); similar to SCPL13, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22980.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to SCPL13 [Arabidopsis thaliana] (TAIR:AT2G22980.4); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.124383663177660 0.99358380917465 0.342007018814740 1 -0.133134315910993 12.5680202845758 0.124383663177660 0.157384766935439
AT1G49730_at 3.05679443909807 2.99865250222589 1.68562363569125 1.70679751198922 3.01039927415984 2.47669816487309 3.03755450236946 2.24324102230634 4.16153838209331 3.02687885040998 4.84240741346434 4.56915708341271 3.36087407594007 3.90915998118959 5.20710595293962 3.39961319968529 2.73270412245628 3.46672600286586 3.54709852230572 0.26134664946727 0.264076350074071 0.262133367576555 0.260091433909001 0.267079661559026 0.267061305521963 0.267558645322401 0.260657450659119 0.295248010405034 0.268205066462867 0.265176832668981 0.263904713130492 0.25899618206932 0.266845113945628 0.282515753267968 0.25899618206932 0.273968372794502 0.263772705731990 0.260236281883539 1 1|0 -|/ 18407191 18407976 18407657 18406174 18409237 - gene protein_coding_gene FALSE TRUE AT1G49730.1|AT1G49730.2|AT1G49730.3|AT1G49730.4 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G19300.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0689400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054345.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G19300.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0689400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054345.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G19300.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0689400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054345.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.128358871215188 -0.993565902701668 0.342015354393456 1 -0.133150728624759 6.28420699688776 -0.128358871215188 0.165952077671295
AT3G11000_at 0.70875142348068 0.667717694870243 0.892244817945524 1.08259017843331 0.676900808543158 0.734644703637471 0.739792657608715 0.737227662437133 1.12335445706231 0.991603267000395 1.04809012472638 0.789677256554881 1.13932727788236 1.16541768374313 0.97414178685908 0.415042455081677 1.10503232865613 0.880693566112038 0.60467453220562 0.194455898063856 0.200793164691863 0.200115821283317 0.194677878005814 0.199835856438682 0.200337919590721 0.202699246967222 0.196617735294379 0.206460088761833 0.195561569971998 0.197699673138938 0.198491959303618 0.197208553174602 0.205321794769923 0.19676798248138 0.198316226303884 0.202665754354133 0.200226523631767 0.198810893634960 3 3 + 3449444 3449917 3449675.9 3447574 3450517 + gene protein_coding_gene FALSE TRUE AT3G11000.1 similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G01660.1); similar to hypothetical protein MtrDRAFT_AC158501g20v1 [Medicago truncatula] (GB:ABD33283.1); contains domain KELCH-RELATED PROTEINS (PTHR23230); contains domain no description (SM00767); contains domain SUBFAMILY NOT NAMED (PTHR23230:SF11) 0.0831782460349281 0.992732617222595 0.342403418372868 1 -0.133914232863902 1.70309469105690 0.0831782460349281 0.0351501499257268
AT1G14610_at 8.43235748600861 8.39690327337867 8.2632577882432 8.19782797140677 8.2601692207215 8.22211115591023 8.53717750661293 8.51817634029501 8.10130380200976 8.45491446182252 8.42076691924767 8.9832585458787 8.37277968518903 8.3086511978547 8.66612778569925 8.33340882862465 8.38818153538294 8.21580691576135 8.60678918653964 0.140029073446250 0.147353467818628 0.149083522195887 0.142662507916332 0.150669754773738 0.142141693844745 0.136658405371211 0.150721686236518 0.148695789646437 0.140564106712479 0.144004938332837 0.138795264891923 0.136665070529235 0.146237329167111 0.14525486059202 0.142943744847294 0.143872105429502 0.142212106255015 0.139538413884733 1 1|0 -|/ 5008519 5009465 5009014.444 5008239 5014528 - gene protein_coding_gene FALSE TRUE AT1G14610.1 TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase Required for proper proliferation of basal cells. Identical to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) (VALRS) [Arabidopsis Thaliana] (GB:P93736;GB:Q8W4A8;GB:Q9MA22); similar to EMB2247 (EMBRYO DEFECTIVE 2247), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G16715.1); similar to Valyl-tRNA synthetase, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95812.1); similar to Valyl-tRNA synthetase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAP54522.1); similar to Valyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93604.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Valyl-tRNA synthetase, class Ia; (InterPro:IPR002303); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain ValRS-IleRS-LeuRS editing; (InterPro:IPR009008) -0.0809292954612792 -0.992643757957137 0.342444819417145 1 -0.133995619825019 16.7778935062365 -0.0809292954612792 0.0148338463931695
AT1G73060_at 9.64005587870989 9.73915389264086 9.5599669086054 9.40910824982191 10.00187272213 9.79780629959914 10.3233332262547 10.3165844634956 10.2432507206478 9.98277191691212 10.1337752628476 10.2705167207486 9.89725276217287 10.0207462556510 10.4121436755344 10.4688281781387 9.89973027059302 10.3160983401003 9.87995834166478 0.111345694313663 0.105895995344553 0.116674009467075 0.111500208308153 0.109922362303243 0.112399259531094 0.111264840468361 0.108298370541746 0.110629308411685 0.107184067010414 0.108870486011830 0.107572620948009 0.108134243192782 0.112541092894754 0.108724204507737 0.105895995344553 0.113954473356035 0.109700022396060 0.107449651969089 1 1|0 +|/ 27483562 27484886 27484237 27482631 27485109 + gene protein_coding_gene FALSE TRUE AT1G73060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48790.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL50320.1); similar to Os02g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045684.1) -0.085266940043866 -0.99230057837147 0.342604746957741 1 -0.134309884790072 19.9548419183063 -0.085266940043866 0.047160936834432
AT4G04950_at 6.63223347040611 7.13693130965016 7.11053470427348 7.43366072016837 7.18282806468115 6.92049831645449 6.87153819587497 7.22845503343227 6.09181249229751 6.46130784789303 6.40371792987192 6.24689021180876 6.52633656290392 6.22847656137227 5.60025948239165 6.46536166628749 6.53207863855502 6.22668354792565 6.19654065726698 0.191457169082949 0.179830810429289 0.200968042018532 0.185249242872624 0.177537851584394 0.190804452443757 0.183294139050493 0.177537851584394 0.181613668477321 0.177537851584394 0.181483084918296 0.185144974231775 0.184461572523967 0.183152357476687 0.183101554813737 0.18358078032903 0.182865889193976 0.181377502038397 0.182144027997823 4 4 - 2517885 2518452 2518180.455 2517664 2519975 - gene protein_coding_gene FALSE TRUE AT4G04950.1 thioredoxin family protein Identical to Monothiol glutaredoxin-S17 (AtGrxS17) (GRXS17) [Arabidopsis Thaliana] (GB:Q9ZPH2); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G32580.1); similar to putative PKCq-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93692.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) 0.111714762520289 0.992094909134588 0.342700618468075 1 -0.134498182594503 13.3288912640137 0.111714762520289 0.128961939773107
AT4G14730_at 1.31703509765307 1.96726204963328 1.43470625686461 1.64708353610074 1.94565205047075 1.71756891411726 2.29888311449066 1.57801133407494 1.80891388800708 1.61525029671587 1.59119774431317 1.65900950971515 1.98427415662959 1.86628202875378 2.33096705250749 1.43882480521692 1.92253823628454 2.10051259404605 1.05012053550118 0.260543027585240 0.270947633501282 0.265065578235185 0.260543027585240 0.268878543382749 0.260543027585240 0.260543027585240 0.268839616344938 0.270495534940985 0.262689270530794 0.262791988807096 0.260543027585240 0.278051270597561 0.262818400397024 0.260543027585240 0.260543027585240 0.265896148607899 0.265326385949831 0.260543027585240 4 4 + 8448603 8448698 8448653 8448544 8450068 + gene protein_coding_gene FALSE TRUE AT4G14730.1 transmembrane protein-related similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT1G03070.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.133113658141991 0.991869566531835 0.342805683093078 1 -0.134704455300304 3.41483979717969 0.133113658141991 0.176445947851811
AT3G51290_at 0.545961537742013 0.191907395649861 -0.129292508250959 0.0415203639500345 0.389090386508080 0.319180359588718 0.28303973941922 -0.190291313580784 0.0996168842923364 0.368264910519465 0.341913654223141 0.397036588459005 0.910924518662566 0.495835299757033 0.697529853581964 0.609534815772524 0.632462950518547 0.50960981268134 0.479585182534777 0.174294822833285 0.174166409599843 0.172723823977800 0.177587954726859 0.174837076234572 0.176688250567568 0.176156535173639 0.175877053292062 0.185086822229930 0.174810233679059 0.174257812049755 0.176275550812360 0.176708619306635 0.181086985911832 0.18370539024081 0.17654166293413 0.176246780825606 0.183153841040779 0.176237413091278 3 3|0 +|/ 19052752 19053338 19053076.8 19050959 19053548 + gene protein_coding_gene FALSE TRUE AT3G51290.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G02110.1); similar to unknown [Gossypium hirsutum] (GB:AAN05792.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868); contains InterPro domain Steroid nuclear receptor, ligand-binding; (InterPro:IPR008946) 0.103001960783107 0.991703312719196 0.342883213003289 1 -0.134856615011821 0.626478626372877 0.103001960783107 0.107162774238313
AT1G20900_at 1.86139336544439 1.93745192114312 2.0523163041481 2.17100541013884 1.69864900360472 1.92736630547211 2.40723202860781 1.94659047863298 1.88935353215408 1.90330439272716 1.98382357975030 2.03510931674761 2.28322491495919 1.95363608989910 2.14818223127211 2.21612347601366 2.01696701837037 1.96476183695112 1.61962772879286 0.219738301469445 0.208454983814686 0.212975670858119 0.214219199534433 0.208454983814686 0.211468552359021 0.217175860781405 0.214776504828843 0.225736911881601 0.213667106963856 0.214940656421652 0.216697505146295 0.215608768854766 0.217318187154611 0.212386353363603 0.208454983814686 0.208454983814686 0.218050234888248 0.210861637945058 1 1 + 7273361 7273909 7273595.818 7272545 7274061 + gene protein_coding_gene FALSE TRUE AT1G20900.1 ESC (ESCAROLA) ESCAROLA (ESC) Identical to Putative DNA-binding protein ESCAROLA (ESC) [Arabidopsis Thaliana] (GB:Q9S7C9); similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT1G76500.1); similar to Os02g0713700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047914.1); similar to DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33253.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.0976503237439664 0.991652089085396 0.342907102937322 1 -0.134903491961357 3.93991249009241 0.0976503237439664 0.0922844316585851
AT4G18540_at 0.789855137908089 0.98982487637924 1.23656012870953 1.28727266628274 0.944349047858393 1.05238044260640 0.83658700864466 0.836648266640719 1.10758512139097 1.08276141475003 1.00726565431851 1.16807322319986 0.767588368095226 1.00605408835391 0.85995924083058 0.88113140497161 1.04228746802671 0.94295493095279 0.985215225212945 0.201904674269005 0.200815888291758 0.204702279066679 0.205380937371932 0.200752213642831 0.206943074763693 0.200303395945377 0.205267662964707 0.205114845289322 0.205218558777948 0.200303395945377 0.207468311791173 0.203210315759055 0.201285822037569 0.211470667679916 0.203374175120928 0.217324127993442 0.204810286800024 0.209205884078334 4 4 - 10221221 10221951 10221698.455 10221214 10223039 - gene protein_coding_gene FALSE TRUE AT4G18540.1 similar to conserved transmembrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61224.1) 0.0839027295983765 0.991345033161456 0.343050334688323 1 -0.135184450350239 2.00565213910954 0.0839027295983765 0.0402999852477931
AT2G05600_at 0.617465981000403 0.706841087862706 1.03205725682911 1.12683704799253 0.68488579721174 0.690883409937004 0.598055913381209 0.581379269035641 0.361613824705834 0.860195359981429 0.216338150002569 0.525756998374904 0.402743661330769 0.500100664085507 0.357814005157542 0.611885711255022 0.605499510737897 0.272064621951872 0.372059983424233 0.211252038658219 0.211252038658219 0.220463022443683 0.217855448005185 0.211252038658219 0.226326419850332 0.211442016770946 0.211252038658219 0.216232579705130 0.218854263339983 0.214754756329708 0.213484300701454 0.220835105723426 0.222546630076563 0.217573203751218 0.212721420123129 0.225883791190162 0.214935588131667 0.214994986548369 2 2 + 2072766 2073478 2073254.545 2072643 2073544 + gene protein_coding_gene FALSE TRUE AT2G05600.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G02030.1); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.0814830039153911 0.991310435046497 0.343066476337941 1 -0.135216103395718 1.23870828943921 0.0814830039153911 0.0227520491404070
AT1G54220_at 5.86706952722298 5.98269173674235 5.37797659330399 5.31951199485554 5.88019374669853 4.79420872442038 6.54858632280069 6.17936816569877 5.15877270755709 5.81893344842069 5.70195307718247 6.46511641223509 5.60919688130868 6.19583191870151 6.07662937620168 6.31714823681204 6.0973174619148 5.88292932669792 5.61434903888394 0.169298167088755 0.172865079968708 0.169380579373932 0.173833337086033 0.170983253912706 0.180513639785203 0.166976272405292 0.169483085091184 0.191273526261432 0.166976272405292 0.172034355111916 0.168079501698866 0.175912324415583 0.174839097230122 0.175951129919131 0.172274444763963 0.184475613763066 0.171275612811762 0.17548120514588 1 0|1 /|- 20250286 20250953 20250565.667 20249704 20253977 - gene protein_coding_gene FALSE TRUE AT1G54220.1|AT1G54220.2 dihydrolipoamide S-acetyltransferase, putative|dihydrolipoyllysine-residue acetyltransferase Identical to Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 3) (PDCE2) (E2) (Dihydrolipoamide S- acetyltransferase component 3 of pyruvate dehydrogenase complex) (PDC- E2) [Arabidopsis Thaliana] (GB:Q5M729;GB:Q8L787;GB:Q94IP5;GB:Q9SLL0); similar to dihydrolipoamide S-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G13930.1); similar to dihydrolipoamide S-acetyltransferase [Zea mays] (GB:AAD46491.1); similar to Os06g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056555.1); similar to Dihydrolipoamide succinyltransferase [Medicago truncatula] (GB:ABE80470.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide acetyltransferase, long form; (InterPro:IPR006257); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) -0.144437950934358 -0.99117568783517 0.343129347540938 1 -0.135339371972379 11.5306760521357 -0.144437950934358 0.199761768196370
AT3G22980_at 5.36204748856158 5.77338507280412 5.19904213363593 5.31480538459981 5.33715813251721 5.93551579540728 4.81618207772594 5.28194866014197 5.49409578433684 5.36207406326914 4.93400969207364 4.99377961629473 4.80086251507212 4.63953825877316 4.87995341093092 5.13986758421207 5.1409774962233 5.03434115803392 5.12087456926981 0.206217218263595 0.198618615901219 0.202433996997904 0.200709048262970 0.200881279311386 0.201139998609271 0.208083179858374 0.199713452010356 0.20767898829928 0.200438123419051 0.198618615901219 0.200340188032269 0.203667036411914 0.200803627646805 0.210160291277674 0.198618615901219 0.212908815758888 0.209197488075670 0.202171566985366 3 3 - 8160350 8160819 8160596.364 8160163 8163323 - gene protein_coding_gene FALSE TRUE AT3G22980.1 elongation factor Tu family protein similar to LOS1 (Low expression of osmotically responsive genes 1), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G56070.1); similar to hypothetical protein SPCC553.08c [Schizosaccharomyces pombe 972h-] (GB:NP_587766.1); similar to Mitochondrial elongation factor (ISS) [Ostreococcus tauri] (GB:CAL56720.1); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE84294.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor G, domain IV; (InterPro:IPR005517); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.121012859554271 -0.991167188988856 0.343133313268153 1 -0.135347146370838 10.5130594375461 -0.121012859554271 0.150624192736153
AT4G19610_at 5.5986982583882 5.9888679819219 5.63993456823001 5.4819886459099 5.83010252191891 5.39150019226425 5.88609839765772 5.23956459212685 4.92118405407613 5.17509727680096 5.19806832322058 5.25406360706221 4.99935182709172 3.94102270420473 5.08145081784462 5.09533841107612 4.80770794595608 5.04174950462092 5.14249268861534 0.206924874525449 0.202364802086415 0.205853027835678 0.202364802086415 0.203665172135241 0.214953745658736 0.208997954957834 0.212048901842194 0.210739989258837 0.202364802086415 0.215208938289037 0.202364802086415 0.213879325700801 0.202364802086415 0.211796418543135 0.207177426425088 0.211384025938160 0.207424824219218 0.206860365436255 4 4|0 +|/ 10680770 10681535 10681100 10677675 10681633 + gene protein_coding_gene FALSE TRUE AT4G19610.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G05720.1); similar to Os04g0611500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053839.1); similar to OSJNBa0085I10.19 [Oryza sativa (japonica cultivar-group)] (GB:CAE03574.2); similar to RNA-binding protein (RRM superfamily) (ISS) [Ostreococcus tauri] (GB:CAL51584.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.122336511319544 -0.991093811460952 0.343167554043175 1 -0.135414266867553 10.6355621360349 -0.122336511319544 0.153576365940135
AT1G33420_at 4.42689777513772 5.01773606145847 4.9703377543034 5.13308960397818 3.87860005239565 4.32120936764102 3.06586341110245 3.24063062480658 3.75617858232773 3.1896518231516 2.9320699606676 3.11758817580579 2.68649167872094 3.10264006165738 2.88418017154461 2.66807356853861 3.25876835366447 3.1125273096718 3.1962167401812 0.208962475551256 0.20547833282836 0.20843189615391 0.20407324631934 0.202080765490342 0.206399898220259 0.204856946616949 0.20346286355899 0.205074313957516 0.202080765490342 0.212739523947569 0.202080765490342 0.20864207315884 0.205511838701456 0.202080765490342 0.208256858484683 0.204246163789823 0.204519334084222 0.205997911277007 1 1 - 12121080 12121611 12121355.091 12120866 12123556 - gene protein_coding_gene FALSE TRUE AT1G33420.1 PHD finger family protein Identical to PHD finger protein At1g33420 [Arabidopsis Thaliana] (GB:Q9C810); similar to MMD1 (MALE MEIOCYTE DEATH 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G66170.1); similar to Os01g0877500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044975.1); similar to Os11g0234200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067563.1); similar to putative male sterility 1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37958.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.113818627300158 0.990894543540334 0.343260552696978 1 -0.135596522267197 7.4322829773133 0.113818627300158 0.134273539660661
AT3G50540_at 3.71418074899415 3.82505631913366 4.40196176595792 4.00186231496736 3.81950073903832 4.19786542513815 4.14519548669161 3.65947770025397 4.68080150305614 4.11737897625503 4.32462479810424 4.03811988179608 4.48592883445429 3.75910169744995 4.44234977817186 4.05073243471764 4.35483189173341 4.82327414918881 4.19616050439855 0.155337359662049 0.163540533430233 0.157813283451688 0.155126833736466 0.164174330315971 0.157454376405849 0.162786568700669 0.174197657790973 0.15652854932599 0.160729852866723 0.158268986269030 0.155036476881619 0.162828480497026 0.161512245536380 0.159249002322842 0.155877152923462 0.158091910429921 0.163302990287102 0.157103540761920 3 3|0 +|/ 18768750 18769074 18768911.875 18768730 18769121 + gene protein_coding_gene FALSE TRUE AT3G50540.1 unknown protein 0.111371718069610 0.990719607734494 0.343342210675362 1 -0.135756498093167 8.27879627640786 0.111371718069610 0.128510370797752
AT1G72560_at 4.27383340912995 4.4235037234772 4.60197515511338 4.38665461381825 5.26958625557957 3.64040445629525 5.27229927052824 4.87653609287538 4.38453081106204 3.91754903371975 4.01727830685036 3.86046901707335 4.52501790509321 4.23187939421443 3.49437339482996 4.63304210841359 3.49135715637781 4.32446161449532 4.36679061121682 0.248748174553514 0.253368549002975 0.253410406925738 0.248924481223673 0.246194931800211 0.271847489669083 0.245345019870359 0.248060064459065 0.244560965162571 0.243003509862981 0.243003509862981 0.243003509862981 0.243003509862981 0.245687101967275 0.250304189784028 0.249200118721908 0.276130571375636 0.246190684683068 0.249521710975653 1 1|0 -|/ 27328465 27329595 27329090.125 27328051 27333129 - gene protein_coding_gene FALSE TRUE AT1G72560.1|AT1G72560.2 PSD (PAUSED); tRNA binding|PSD (PAUSED) Encodes a karyopherin, specifically the Arabidopsis ortholog of LOS1/XPOT, a protein that mediates nuclear export of tRNAs in yeast and mammals. PSD is capable of rescuing the tRNA export defect of los1 in S. cerevisiae. psd mutants display disrupted initiation of the shoot apical meristem and delay leaf initiation after germination; they also display delayed transition from vegetative to reproductive development. similar to Os07g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060255.1); similar to PREDICTED: similar to tRNA exportin isoform 1 [Canis familiaris] (GB:XP_531658.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Exportin 1-like; (InterPro:IPR013598) -0.193804980149391 -0.990707893962803 0.343347679032709 1 -0.135767209309712 8.7406949625195 -0.193804980149391 0.293664431746654
AT4G38080_at 0.755158346144706 1.02300714048477 0.939927917912913 0.325633886716712 0.673608178803823 0.822674325889842 0.707016822487212 0.637098181722803 1.01918664460827 1.08619181430771 1.05602173105173 0.94482260339355 0.720321184000867 0.686410483771498 1.27587670331492 0.657468840783571 0.935214827690782 1.27606734523365 1.10225586112493 0.192956173532008 0.199958347832992 0.198417246720677 0.196891102289928 0.188749398974357 0.190146241804844 0.191763842637619 0.194527806166131 0.195341407795884 0.197076200103718 0.201903004237396 0.188749398974357 0.193438872204567 0.196856844695698 0.190364377437433 0.194821009972923 0.192413210338331 0.192172703561584 0.198248128699436 4 4 + 17883020 17883305 17883156.273 17882958 17883606 + gene protein_coding_gene FALSE TRUE AT4G38080.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT2G22510.1); similar to F14J16.29 [Medicago truncatula] (GB:ABE93086.1) -0.107647510243808 -0.990608711279703 0.343393983178691 1 -0.135857899001798 1.7421340524797 -0.107647510243808 0.119421444478926
AT1G15460_at 1.56923005193293 1.48111024621846 1.53230738609849 1.8769323426466 1.03926572383600 1.84927072393557 1.70249819725648 1.58202668092494 2.3938279143157 1.91827494809464 1.55484474468667 1.63482361984221 1.68258668853486 1.76119181812006 2.21003620189193 2.01295382182289 1.91217929180276 2.00514030440387 1.93612528979043 0.199356897822279 0.195995953100433 0.195449410574301 0.20329357897078 0.216107317156472 0.198756577857163 0.20459394884087 0.207235437656183 0.206630372249364 0.203614500157858 0.201088557810598 0.198382114069293 0.199641218973703 0.203695409083789 0.202583895413047 0.202022639108960 0.213510505374085 0.207708306825669 0.201897351522163 1 1|0 -|/ 5310614 5311089 5310844.8 5309996 5314089 - gene protein_coding_gene FALSE TRUE AT1G15460.1 anion exchange family protein Identical to Boron transporter-like protein 2 [Arabidopsis Thaliana] (GB:Q9XI23); similar to anion exchanger [Arabidopsis thaliana] (TAIR:AT4G32510.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G74810.1); similar to anion exchange protein family [Arabidopsis thaliana] (TAIR:AT5G25430.1); similar to HCO3-transporter [Medicago truncatula] (GB:ABE78978.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:ABD78950.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:ABD78951.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) -0.122647702983068 -0.990188148215819 0.343590376685231 1 -0.136242366461037 3.54381130850039 -0.122647702983068 0.154509126058573
AT4G37900_at 2.62093522975480 2.58935013033401 2.43774333144038 2.12562250647682 2.23399308875177 2.28606907873288 2.11457548860499 1.91357374326314 2.23135523407049 1.96372059238841 2.29433756827254 2.19418267057623 2.31879564825273 2.47640620653653 2.35984838118921 2.1167366991855 2.05175976701524 2.68916536167855 2.09120387123670 0.198279696900578 0.212891724903918 0.204249668917900 0.207139654652926 0.200736274396595 0.201682402818826 0.201532371650792 0.203472689166035 0.206503156896672 0.201835924231029 0.204595308823412 0.206494025563379 0.201552760017989 0.198444545817700 0.201980798761908 0.206415431474511 0.202967814121875 0.213343235977762 0.199653085213508 4 4|0 -|/ 17821809 17822331 17822048.5 17821731 17824621 - gene protein_coding_gene FALSE TRUE AT4G37900.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22660.2); similar to Protein of unknown function DUF1399 [Medicago truncatula] (GB:ABE84186.1); contains InterPro domain Protein of unknown function DUF1399; (InterPro:IPR009836) 0.0892379126505036 0.990053079135042 0.343653468295845 1 -0.136365814526950 4.49427312653827 0.0892379126505036 0.0651041301295201
AT4G18250_at 4.89736154742853 5.60971120900029 3.15062851870717 4.25060279804739 3.82517148802378 3.31066579157404 0.9854513219218 1.02663812816284 3.23703166549560 2.08940044515609 1.62354167869936 2.08942339069075 1.51459181546483 1.98033781375679 1.77316146929726 1.70641475893606 1.89648559486621 1.66094408985309 2.52979202243972 0.268352969133446 0.258762137053301 0.257525167255755 0.245978736411207 0.277560937064397 0.247020275983017 0.245406302741230 0.252772216010564 0.240373819481414 0.250928774760816 0.240373819481414 0.245170131035425 0.250846039300359 0.243134595344646 0.250137610236702 0.2422039294492 0.244251304204232 0.243785758497019 0.240790264581917 4 4 - 10087369 10087854 10087539.545 10087354 10091974 - gene protein_coding_gene FALSE TRUE AT4G18250.1 receptor serine/threonine kinase, putative similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70250.1); similar to PR5K (PR5-like receptor kinase), kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G38280.1); similar to receptor serine/threonine kinase PR5K (GB:AAC49208.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.166826101895932 -0.989826753012662 0.343759205586093 1 -0.136572637077775 5.58170582742957 -0.166826101895932 0.243742927689861
AT2G01910_at 7.07348619218158 7.1427765811584 7.10414111437557 6.9969105199164 7.87391517286669 7.6848532003289 7.37483102531548 6.96140395726576 8.37285091492283 7.83353449200274 8.38639422374712 8.37167450624018 8.1791351746995 8.05653791805978 7.62742846377608 7.73453063288671 7.62342360015687 8.02054942332863 8.05996896285182 0.132019771421803 0.126032075390375 0.123325093009644 0.123933797970023 0.124844258104224 0.12937971929894 0.124011889176993 0.128552107376446 0.127687898719769 0.129459607735584 0.126721668252426 0.130604689965248 0.130223766493401 0.12990339629902 0.13066792071171 0.129265922863048 0.133194566038385 0.125399101538981 0.126115062235266 2 2 + 419362 420145 419906.636 416910 420587 + gene protein_coding_gene FALSE TRUE AT2G01910.1|AT2G01910.2 ATMAP65-6; microtubule binding|ATMAP65-6 Binds microtubules. Induces a crisscross mesh of microtubules, not bundles. Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14690.2); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO06976.1); similar to Os03g0237600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049496.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14690.2); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145) 0.0940025079138258 0.989732910717679 0.34380305472301 1 -0.136658381150215 15.3209117368199 0.0940025079138258 0.0817151457484317
AT4G05160_at 9.69995685934014 9.8472958091799 10.0962568911728 10.0999335427464 9.8754954139671 9.56057164993732 9.6564552381237 9.58563121176521 9.65803972732586 9.75540654820624 9.695440348669 9.4722933390099 9.56712384241094 9.55294562336339 9.67981731168371 9.69434691426362 9.56511427781928 9.6507268161395 9.5184474873276 0.101442416204004 0.0996833782018095 0.0988246498797093 0.0992257485608668 0.100709569831561 0.0955578049675341 0.101703992036890 0.0963873998304307 0.0995102142006597 0.0969210173138438 0.101713078231187 0.0997374438265935 0.100168636716018 0.101018708479690 0.100921338212107 0.0973066674605647 0.104680154406709 0.104652301729663 0.0992198146833634 4 4|0 +|/ 2665670 2666470 2666111.429 2664383 2666705 + gene protein_coding_gene FALSE TRUE AT4G05160.1 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94022.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0882455332018466 0.989568866601304 0.343879716451483 1 -0.136808252853256 19.429544900424 0.0882455332018466 0.061407662585965
AT2G36920_at 0.885738709676808 1.38009966325021 1.25676959462814 0.965259766231096 1.01694891066959 1.31941026910398 1.29338909877682 1.38686498425322 1.77972124095828 1.25165642138150 1.38620328075813 1.46344736502506 1.64692011226731 1.15310330219919 1.26512040989780 1.49128253333175 1.25668721487438 1.27299267004794 1.40959768562881 0.221321050582633 0.214732843906449 0.233690003546110 0.220667702989754 0.214907645552013 0.225133840238296 0.219939982172277 0.221049791561177 0.224616735557159 0.214732843906449 0.232799764076484 0.225231250504834 0.222708300495301 0.221763460015314 0.230156771441778 0.214732843906449 0.225205125208230 0.220234688724337 0.216937489151598 2 2 + 15515982 15516523 15516284.273 15515877 15516926 + gene protein_coding_gene FALSE TRUE AT2G36920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02870.1) -0.105140741885200 -0.989277067294895 0.344016112040364 1 -0.137074792010095 2.61170748809360 -0.105140741885200 0.113425596141821
AT3G29300_at 0.891525703967813 0.428724308127657 0.703959989047312 0.489338605172098 0.7309035290458 0.462380049178457 0.452044179201666 0.841758167876061 0.70938118541961 0.895592645517146 0.735605822403858 0.681968764557931 1.26823607640585 0.326936721977131 0.55322640625193 0.527037160731012 1.02549891450603 0.604991585623584 1.01806246533796 0.193575083940700 0.187621761993982 0.192288981345636 0.1932344319455 0.188361264292741 0.189362916178351 0.196273630881836 0.193414257877015 0.194360954767551 0.189277707925861 0.192925236954210 0.187813508328976 0.188316395440024 0.187431413379517 0.191993915836917 0.186375633637770 0.191867585703096 0.202886790683702 0.190770150587787 3 3 + 11248309 11248843 11248576.545 11248248 11248889 + gene protein_coding_gene FALSE TRUE AT3G29300.1 similar to Os04g0648600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054076.1); similar to H0821G03.14 [Oryza sativa (indica cultivar-group)] (GB:CAJ86063.1); similar to OSJNBa0010D21.7 [Oryza sativa (japonica cultivar-group)] (GB:CAD41705.2) -0.107887648608395 -0.989127677824281 0.34408595634646 1 -0.137211224294844 1.41997087327648 -0.107887648608395 0.120422835879582
AT4G09950_at 2.66317985138213 2.7138876707297 2.48568305689644 2.37573256976921 2.11623513397188 2.41903697454369 2.27039834768990 2.71482874425636 2.64119377270633 2.71307631968545 3.48504679068044 3.74736787004452 2.52504584356188 3.03236510813753 3.50796719110787 3.33976765675643 2.63608064689955 3.29809397976052 2.92010435461349 0.251131727401149 0.242468273210139 0.250522458743275 0.245551850029906 0.250686447396928 0.246291502586702 0.242718386462727 0.241537342363969 0.248172189397329 0.242417551971187 0.246023112068488 0.253272186850715 0.240792654372787 0.244771794168497 0.251950956181138 0.256152796517294 0.249926172093615 0.250893112744222 0.243062398553061 4 4|0 +|/ 6235499 6236268 6235784.333 6234759 6236309 + gene protein_coding_gene FALSE TRUE AT4G09950.1 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT4G09940.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 0.0984701752404732 0.989092575534596 0.344102369278232 1 -0.137243279555732 5.44716864442342 0.0984701752404732 0.0953949961699333
AT4G13000_at 2.31386905105703 2.15861895367376 1.86693586771954 2.19378082889810 1.78536937996911 2.18054701201533 2.05734351994137 2.11221818409844 2.50227661479559 2.17076311707634 2.11757166708052 1.68883025353465 2.23813470095788 2.01644343091594 2.01902800228834 1.91793835284328 2.09973496640012 2.49576438683847 1.67412076137120 0.243550328858423 0.239905317977544 0.259882833361304 0.24736644072674 0.242655617220562 0.241897450156295 0.242888213917657 0.251900846257964 0.242167686768924 0.239375000867481 0.240916055288059 0.239375000867481 0.243710154203244 0.244547144326606 0.239569133844581 0.239375000867481 0.251461294974442 0.246681913300077 0.239533957557339 4 4 - 7598194 7598671 7598503.727 7598090 7599254 - gene protein_coding_gene FALSE TRUE AT4G13000.1 protein kinase family protein similar to AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1), kinase [Arabidopsis thaliana] (TAIR:AT3G25250.1); similar to Os02g0603000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047362.1); similar to Os04g0488700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053154.1); similar to putative viroid symptom modulation protein [Oryza sativa (japonica cultivar-group)] (GB:BAD21495.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0976967996745537 -0.98891117395411 0.344187197110491 1 -0.137408919798931 4.17853579193247 -0.0976967996745537 0.0932099490446135
AT3G14070_at 2.16730721787188 2.48231063259012 2.77034224053947 2.6325204773509 3.01811911397143 3.2830310138296 2.78935661881952 2.40960130067181 2.77830012032483 2.7875937604897 1.96083456291408 1.97447986599475 2.60798512825523 2.2972093006194 2.38192172739956 2.29451105882888 2.75485334621988 2.39582096697405 2.22608889894172 0.205057474320733 0.205151236578036 0.203860659450344 0.213793017596674 0.211669921036612 0.218571897785392 0.222825466873675 0.206292260125852 0.21943291753582 0.203807573128262 0.210088218164425 0.204951530732536 0.210789268732397 0.214529530738317 0.215013258788808 0.205343591095492 0.214307188447498 0.209407961848328 0.207572853109742 3 3 - 4661150 4661709 4661452.818 4661150 4663081 - gene protein_coding_gene FALSE TRUE AT3G14070.1 CAX9 (CATION EXCHANGER 9); cation:cation antiporter similar to cation exchanger, putative [Arabidopsis thaliana] (TAIR:AT1G54115.1); similar to Sodium/calcium exchanger membrane re (GB:ABE92415.1); similar to Os03g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049159.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) 0.0999918351665814 0.988715991542943 0.344278486225862 1 -0.137587115608833 5.159463370907 0.0999918351665814 0.0998053531341546
AT1G01260_at 5.02234331839662 5.52147505923501 4.77619985386250 5.06101382165834 4.98934419493429 4.97817491350045 4.73416465682849 4.94082614948103 5.54276197920301 4.9310954029155 5.62586055176428 5.13664717533714 4.94904603906274 5.25708557786332 5.16873833523209 5.02729110958005 4.6875638405885 4.76297260847213 5.05910274988515 0.19583284007548 0.191573805283903 0.191130442698741 0.191425198966782 0.195877206590008 0.206715657277053 0.191130442698741 0.192067383989185 0.194511284891151 0.194365646998919 0.198840163535889 0.191600036407754 0.192778504904975 0.193935546982473 0.194320202389788 0.197220806442240 0.208480336043241 0.204598715012246 0.193818911683330 1 1 + 110800 111296 111004.909 109032 111609 + gene protein_coding_gene FALSE TRUE AT1G01260.1|AT1G01260.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46510.1); similar to Os01g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042524.1); similar to bHLH protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81265.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.102135911296709 -0.988613055962259 0.344326637520233 1 -0.137681081123505 10.1302197620231 -0.102135911296709 0.105703003595110
AT1G02490_at 2.95416172628118 2.23037426086904 3.21249667573259 2.63521428643046 2.52824921568774 2.948176838406 3.05541984984467 2.45670424573736 2.79138960018519 2.64953760556404 2.74544327192194 2.31544863525892 2.91228796552701 3.09573813880041 2.49504701976086 2.74350713428092 3.15788254444162 3.14337260779014 2.6303565205652 0.229283292144261 0.219186115658760 0.223856146287273 0.226668461991837 0.219186115658760 0.223983662071397 0.220332118474036 0.222978095684447 0.22284696372187 0.219795984874332 0.219697038187523 0.222414247853528 0.222643789656682 0.219186115658760 0.224528197835916 0.223971642309669 0.223482774019823 0.229091417237073 0.219751137237798 1 1 + 516629 516705 516674 516618 516734 + gene protein_coding_gene FALSE TRUE AT1G02490.1 unknown protein 0.146266119666194 0.988601824821208 0.344331891530108 1 -0.13769133306789 5.51085904912073 0.146266119666194 0.204169510626085
AT3G62490_at 0.98119767991434 0.96223710802156 1.1425858975776 0.893813462385905 0.767640400060403 1.21430258438677 1.20788832863987 1.08605449087579 1.27083675444961 0.774940009992929 1.19751109184443 1.23253170794466 1.28333646275038 1.08834530436631 1.43866312993175 1.12893311414274 1.46019318266804 1.21802361061770 0.97629244387876 0.202922109705192 0.204651928520148 0.202005126008031 0.199806663702977 0.198932411898491 0.199476535002397 0.201882713357452 0.203167723066681 0.201013891784365 0.201694776155866 0.200127070858107 0.214042183122785 0.199793773807170 0.205766964760805 0.198567117100036 0.202054789235392 0.201014156430424 0.207958849810157 0.207628420379591 3 3|0 -|/ 23123615 23123804 23123723 23123476 23125975 - gene protein_coding_gene FALSE TRUE AT3G62490.1 similar to ASY2, DNA binding [Arabidopsis thaliana] (TAIR:AT4G32200.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT4G20730.1); similar to filament protein-related [Arabidopsis thaliana] (TAIR:AT3G10100.1); contains domain (Phosphotyrosine protein) phosphatases II (SSF52799) 0.096913490999633 0.988542979468425 0.344359420771634 1 -0.137745046372745 2.16361429563629 0.096913490999633 0.09101389138744
AT3G01610_at 4.70206280671221 4.99524963905743 4.78718903796778 4.59806773149951 4.6419063493033 4.94471286637563 4.73725909163399 4.6120857014588 4.69949516528466 4.56820889465062 4.90148249363665 4.51381388008638 4.44224162652989 4.42828134698103 4.63735944773286 5.14714258926726 4.73469342449926 4.51188100005323 5.2353927401972 0.202107165840224 0.20449592825969 0.199475314391376 0.207854944848256 0.204565830241057 0.209317986595915 0.209518617533569 0.205616829195038 0.206747943946483 0.214880913339883 0.205941025911734 0.200655086940154 0.200617704354594 0.205353819679094 0.208835339250282 0.200187158821959 0.208593424063040 0.215483605565711 0.210583362475427 3 0|3 /|+ 234346 235031 234703.7 231658 235221 + gene protein_coding_gene FALSE TRUE AT3G01610.1 CDC48C (EMBRYO DEFECTIVE 1354); ATPase AAA-type ATPase - Over 90% homologous to CDC48a Identical to Cell division control protein 48 homolog C (AtCDC48c) (CDC48C) [Arabidopsis Thaliana] (GB:Q9SS94;GB:Q8L769); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to Os06g0109400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056576.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL57923.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.094224468687442 -0.988385865650899 0.344432930175742 1 -0.137888445027262 9.50180544107232 -0.094224468687442 0.0828289503082286
AT1G59600_at 5.28579062301864 5.42576326306485 5.22949279626676 4.99824043881506 5.58841438451175 5.0842690744392 4.89368518270085 4.71188487745412 4.73632277459364 4.11243650427766 4.34619030174289 4.28931777860088 3.8260860610673 4.07578942927916 4.08461696103593 4.21088200250358 4.34871538178151 4.17032497963661 3.48734929788602 0.232440915681779 0.228244400779862 0.227479207175902 0.232170015931927 0.237859081730612 0.223749779030552 0.225204777224865 0.223018215312751 0.241516208896508 0.232407799309785 0.224987656727813 0.223018215312751 0.227007075541974 0.225814708582765 0.234646834122947 0.229365737227853 0.227061186909396 0.241348711121554 0.22963821345731 1 1|0 -|/ 21893710 21895112 21894588.5 21893360 21895627 - gene protein_coding_gene FALSE TRUE AT1G59600.1 ZCW7 similar to Os01g0593100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043458.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52709.1); contains domain FAMILY NOT NAMED (PTHR12484); contains domain SUBFAMILY NOT NAMED (PTHR12484:SF3) 0.101388678326061 0.987924243316206 0.344648977245898 1 -0.138309661855283 9.29270585713812 0.101388678326061 0.103873723049347
AT1G32320_at 0.589276695335316 0.733644137833124 0.900357493389883 0.829233437340671 0.918762274633722 1.00052835864587 0.614908685124908 0.867292889855896 0.997082110543826 0.910911894933493 0.830276852646333 0.732608561538011 0.882822155257816 0.306105129520606 0.81910277925278 0.905675987909786 0.89120263139422 1.03640897417701 0.608778365013283 0.198583229247881 0.192405116927788 0.195783028525417 0.193210588640725 0.197086249456719 0.196415542045533 0.194967035420026 0.191038402128527 0.201894985703456 0.194857639939221 0.19091464792634 0.19091464792634 0.191412390291417 0.198100285265429 0.19091464792634 0.197957478947365 0.197132882901854 0.201522938429429 0.19751397657264 1 1 + 11655474 11656019 11655640.909 11655136 11656053 + gene protein_coding_gene FALSE TRUE AT1G32320.1 ATMKK10 (Arabidopsis thaliana MAP kinase kinase 10); kinase member of MAP Kinase Kinase similar to ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9), kinase [Arabidopsis thaliana] (TAIR:AT1G73500.1); similar to double MYC-tagged mitogen activated protein kinase kinase 10 [synthetic construct] (GB:ABF55670.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0862705247152146 0.987896036069196 0.344662181916508 1 -0.138335394893587 1.62647525024939 0.0862705247152146 0.0536982986469161
AT1G29120_at 6.80208287535163 7.1818191756511 7.31344352089035 7.00832968185865 7.34203517776555 7.39020270050998 8.33538860434204 8.35730701360431 7.31348983980929 7.73457686816469 7.76578521438328 7.75466015680179 7.76649729625419 7.72183786450457 7.44445433413667 8.29588286973286 8.18767297121815 7.79355620829325 7.82750198043822 0.180973954145159 0.172304206548771 0.180268268640342 0.178722189620798 0.169553046702119 0.177248376863707 0.173831216847177 0.174050004323093 0.201696025473188 0.170555590948971 0.176228243072538 0.169553046702119 0.173313625587674 0.179526071836425 0.188474547616212 0.169553046702119 0.184651320955337 0.178181555029977 0.169553046702119 1 1|0 +|/ 10177127 10178093 10177730.2 10174228 10178475 + gene protein_coding_gene FALSE TRUE AT1G29120.1|AT1G29120.2|AT1G29120.3|AT1G29120.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25770.1); similar to Protein of unknown function DUF676, hydrolase-like [Medicago truncatula] (GB:ABE79089.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Protein of unknown function DUF676, hydrolase-like; (InterPro:IPR007751) -0.094771422684805 -0.987559943292739 0.344819545541735 1 -0.138641960672861 15.1995675573565 -0.094771422684805 0.0847958386610679
AT1G03790_at 1.15356064675092 0.871183038449855 0.654522971732628 0.563572383092349 0.836192622473897 1.14102719086062 1.07608067463626 0.686535716563927 1.05411974445031 1.07440199657829 1.23177256309143 0.672876343754132 0.713596067704507 0.89388102138721 1.27891709703387 1.28485708210403 1.09092744818558 1.10399082427360 1.12812991715282 0.221199483510222 0.217692451449857 0.224630930352286 0.222499154073735 0.226334472712099 0.218900295651969 0.221930118710631 0.221328760895167 0.224483137047105 0.217583794975711 0.215759850699080 0.221061562040057 0.216793719490907 0.224414001701577 0.219787986848781 0.215002026696338 0.223682140721394 0.218911402821254 0.22428279810673 1 1 + 955209 955716 955447.636 954524 956096 + gene protein_coding_gene FALSE TRUE AT1G03790.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G44260.1); similar to putative CCCH-type zinc finger transcription factor [Gossypium hirsutum] (GB:AAX20386.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.0998547369228553 -0.987326305334272 0.344928969144554 1 -0.138855022111311 1.93253583490452 -0.0998547369228553 0.0998149705444581
AT3G66658_at 5.6553624793336 5.98337985454101 5.50617402775034 5.40721934215898 5.74435803633872 5.32764688785306 6.05337186347343 5.92952015952707 5.48137494402549 5.35922230125816 5.4236154409943 5.79606959356423 5.46425150004622 5.58002505192307 5.91818348604144 5.55144573925975 5.22365632103268 5.57093597282756 5.22072288406482 0.206317376515642 0.200508682435167 0.198705417966914 0.204679571463792 0.197889029331504 0.203115063417111 0.197889029331504 0.19853244599485 0.201800548393355 0.210988410513754 0.198449875971327 0.197889029331504 0.202086190110453 0.198598909365332 0.198731389684143 0.201537346652524 0.21601260683212 0.197889029331504 0.201468059815301 3 3|0 -|/ 2095381 2096247 2095755.3 2095111 2099157 - gene protein_coding_gene FALSE TRUE AT3G66658.1|AT3G66658.2 ALDH22a1 (ALDEHYDE DEHYDROGENASE 22A1); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 22A1 precursor (EC 1.2.1.3) (Novel aldehyde dehydrogenase family 22 member A1) (ALDH22A1) [Arabidopsis Thaliana] (GB:Q0WSF1;GB:Q70E95;GB:Q9C837); similar to ALDH10A8 (Aldehyde dehydrogenase 10A8), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G74920.1); similar to Os07g0688800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060704.1); similar to Aldehyde dehydrogenase (ISS) [Ostreococcus tauri] (GB:CAL55273.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086)|Identical to Aldehyde dehydrogenase 22A1 precursor (EC 1.2.1.3) (Novel aldehyde dehydrogenase family 22 member A1) (ALDH22A1) [Arabidopsis Thaliana] (GB:Q0WSF1;GB:Q70E95;GB:Q9C837); similar to ALDH10A8 (Aldehyde dehydrogenase 10A8), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G74920.1); similar to Os07g0688800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060704.1); similar to aldehyde dehydrogenase [Trypanosoma brucei TREU927] (GB:XP_825447.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.0984047519659186 -0.987061996132194 0.345052788025472 1 -0.139096003576151 11.1607772137023 -0.0984047519659186 0.0957877267648777
AT3G08590_at 9.36662869298046 9.3758314731911 9.82859032530081 9.9854514159706 9.38556383248415 9.1312041972131 10.0945103530098 10.1260801855808 8.83966680005561 9.53374019018355 9.25013204416815 9.4583265793382 9.52732133114843 9.51068539361687 9.4917970986991 9.54433510426146 9.72505830455837 9.57805354059967 9.16968181991172 0.12583620079141 0.122360131333580 0.131695415571979 0.124394548527973 0.127061716165738 0.127401902961887 0.127661952364809 0.123180414423739 0.136135475479448 0.126102464917126 0.123731229161359 0.125005352223530 0.124981351884247 0.124664209824715 0.122349334377039 0.124293686284189 0.127444277811445 0.122404689223141 0.127810683351058 3 3|0 -|/ 2608719 2609562 2609061 2608477 2611424 - gene protein_coding_gene FALSE TRUE AT3G08590.1|AT3G08590.2 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative Identical to Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (BPG-independent PGAM 2) (PGAM-I 2) [Arabidopsis Thaliana] (GB:Q9M9K1); similar to 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative [Arabidopsis thaliana] (TAIR:AT1G09780.1); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:P30792); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:Q42908); similar to apgm [Malus x domestica] (GB:CAA06215.1); contains InterPro domain BPG-independent PGAM, N-terminal; (InterPro:IPR011258); contains InterPro domain Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; (InterPro:IPR005995); contains InterPro domain Metalloenzyme; (InterPro:IPR006124) 0.0858119188583819 0.986855061930113 0.345149751482991 1 -0.139284636866468 19.0076041984326 0.0858119188583819 0.0520274884802818
AT2G16390_at 3.84624599893289 4.20663913906245 3.46269362672395 3.15431320127056 4.22098494013980 4.14241591700475 3.43865424993274 3.858678985082 3.75338413526719 2.93607501329240 3.44233664362988 3.39012242000298 2.97002105756203 3.12506209464367 3.4646115885596 3.08873875695276 2.90360283854579 3.31141250152007 3.29165878548802 0.253965443322688 0.246270995827458 0.247712819072767 0.250283119490262 0.245496111152547 0.240579359687068 0.245819575520154 0.246609898967871 0.255925036915925 0.25025980933455 0.24364999163369 0.241849827977363 0.250755634899319 0.241935872530727 0.240818031198876 0.240596821729139 0.247158603614185 0.248799560902476 0.243812184087966 2 2 + 7107619 7108125 7107860.727 7104720 7108178 + gene protein_coding_gene FALSE TRUE AT2G16390.1 DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1); ATP binding / DNA binding / helicase/ nucleic acid binding Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins. Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation. similar to CHR34 (chromatin remodeling 34), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT2G21450.1); similar to putative SNF2 domain/helicase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84084.1); similar to putative SNF2 domain/helicase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05447.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM15781.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.103751747819930 -0.986853066944673 0.345150686372786 1 -0.139286455260384 7.0608421567818 -0.103751747819930 0.110480945231755
AT4G11190_at 0.916847363343056 1.12572525859424 1.30293922020978 1.09332468154287 1.07567836224583 1.34345226881387 1.20516007503619 1.00906594854409 1.08671124509562 1.40730362112354 1.34751101413554 1.14882524662856 0.842374095656939 1.36366826208164 1.24420793978936 1.45713859216683 1.48572908527306 1.41882022556116 1.23689736504236 0.179627560029395 0.181028156345470 0.188983179727496 0.180472595252872 0.179627560029395 0.183059847223541 0.179627560029395 0.179627560029395 0.18528564971654 0.180600311718343 0.187377280965243 0.185391039061631 0.180237955607053 0.179627560029395 0.186004731624472 0.180452652834276 0.187281380375961 0.192553268023926 0.190530221415711 4 4 + 6826701 6827146 6826935.273 6826673 6827379 + gene protein_coding_gene FALSE TRUE AT4G11190.1 disease resistance-responsive family protein / dirigent family protein similar to disease resistance-responsive family protein / dirigent family protein [Arabidopsis thaliana] (TAIR:AT4G11210.1); similar to dirigent-like protein [Thuja plicata] (GB:AAF25363.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 0.0922729345324135 0.98684171364342 0.345156006790335 1 -0.139296803535931 2.40011000633231 0.0922729345324135 0.0769507759400837
AT3G10770_at 10.0842980584400 10.2144768767804 10.1440416005710 10.0963691358452 10.7879611307710 10.4742204199078 10.0284624963927 10.091498470564 10.2512689230748 9.98303228545167 9.94342931027791 9.63647981742057 9.74800738767714 9.79898419088688 9.391695035226 9.84746729231573 9.78679870166978 9.59103894352061 10.2588563213548 0.106656529221931 0.104330336245983 0.107913151755931 0.104330336245983 0.107569123111570 0.111436762177042 0.112482046448828 0.108525360443968 0.112509767359113 0.107650815048773 0.108232850455611 0.105997170909473 0.108395408870253 0.111514684811339 0.115752667244355 0.107288193255498 0.107614289877924 0.108497914054627 0.105019168205796 3 3 - 3372467 3373148 3372823.636 3372269 3374276 - gene protein_coding_gene FALSE TRUE AT3G10770.1|AT3G10770.2 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G05100.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46211.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374)|similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G05100.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -0.0877170810949806 -0.986576480523058 0.345280318118801 1 -0.139538529607623 20.1813527377431 -0.0877170810949806 0.0603526636088258
AT1G59960_at 6.45088338958941 6.51975171523459 5.5531241324373 5.4401325890113 5.37176113700357 6.05839268398743 4.29408583972724 4.29881723581886 6.09757736303082 6.07897202715267 6.73532187945708 7.06379986780338 5.77572133966281 6.35615576643113 6.32678045520985 5.58171208214696 5.67667418982738 6.74293978799901 6.66848981328517 0.213577269927802 0.207011697698018 0.211547541567964 0.208393489549264 0.214579447772346 0.213644666824584 0.206533724629173 0.209415204026794 0.219910133352837 0.207031392866071 0.209492383440016 0.210057870179247 0.2149784667157 0.208391077669659 0.211135243398515 0.213509800019683 0.206533724629173 0.209064150160379 0.219572380098534 1 1|0 -|/ 22075099 22075932 22075640.778 22074957 22076812 - gene protein_coding_gene FALSE TRUE AT1G59960.1 aldo/keto reductase, putative similar to aldo/keto reductase, putative [Arabidopsis thaliana] (TAIR:AT1G59950.1); similar to reductase 2 [Hydrangea macrophylla] (GB:AAR89808.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.107838263547511 0.986501972989274 0.345315244701181 1 -0.139606424076858 11.7804025431296 0.107838263547511 0.121013997444208
AT3G01260_at 0.0498965876930139 0.657298156106944 0.469742752255684 0.759494153899733 0.53684002778665 0.579403022643926 0.681389349235692 0.366458431941792 0.55959228547633 0.93467682009456 0.474707079504081 0.823627002840167 0.988229417245893 0.963273665698526 0.505235871801769 0.675726320432887 0.414485444026345 0.600907653450239 0.324988960738678 0.187163921213181 0.188688708539663 0.185576828479633 0.187884716050368 0.186302606482928 0.191406495825645 0.185490758620471 0.186583700679131 0.193368404225184 0.183406283054599 0.194358357924798 0.182831542908825 0.186363900118265 0.186726955758407 0.188395082218815 0.182831542908825 0.188051303192486 0.188425707885675 0.186128581385672 3 3 - 80263 80828 80560.818 80183 81958 - gene protein_coding_gene FALSE TRUE AT3G01260.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE81353.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.110982029670302 0.986209307754205 0.345452461053012 1 -0.139873072383013 1.15616201635118 0.110982029670302 0.128793325634499
AT1G11755_at 5.03347996470294 5.19701562375305 4.97952944122838 5.21330759869546 5.45162291897064 5.00533038476752 5.13579718423994 5.17643142624802 3.52872977967923 3.67633450046532 3.97674202578648 3.76422090005378 4.06583912981869 3.28629509206139 3.91438694951302 3.61535014989982 4.23767027913475 3.83713476884266 3.80489595349762 0.290953080693453 0.291969789524875 0.290778981363332 0.288346291622553 0.292591518289538 0.296520694303231 0.305583165196340 0.292148099749829 0.294970132708727 0.288346291622553 0.288346291622553 0.288346291622553 0.292822073150539 0.291983243974587 0.289791397310857 0.288346291622553 0.288346291622553 0.292978134833287 0.293578947034528 1 1 - 3970611 3971442 3971029.182 3969681 3971840 - gene protein_coding_gene FALSE TRUE AT1G11755.1 similar to hypothetical protein MtrDRAFT_AC126792g27v1 [Medicago truncatula] (GB:ABE94701.1); contains domain FAMILY NOT NAMED (PTHR21528); contains domain Undecaprenyl diphosphate synthase (SSF64005); contains domain no description (G3D.3.40.1180.10); contains domain SUBFAMILY NOT NAMED (PTHR21528:SF2) 0.0969923517604742 0.986174610557424 0.345468731496549 1 -0.139904680801279 8.90266014604385 0.0969923517604742 0.0919349226862956
AT1G71450_at 2.02857587199836 1.56582243054771 2.14737248235652 2.03810164487098 1.23616493116559 1.54387692569064 1.72173444424834 2.21811707592877 2.27025286883156 1.72150936888451 2.14691651309925 2.04232154665182 1.69013980117087 1.95423233664394 1.89410214177219 2.03480378738147 1.44515480262194 2.10228520905959 1.99245280997839 0.192639543313524 0.192513798020831 0.194131025386990 0.200368846494546 0.19477580784595 0.205500234422216 0.192513798020831 0.199027608857231 0.194153715424541 0.193567474827172 0.198236289801003 0.192513798020831 0.197503386027394 0.193446349165121 0.196057869924866 0.197823712547206 0.193624363840432 0.195761530851532 0.193014047925209 1 1 + 26930895 26931181 26931010.545 26930700 26931718 + gene protein_coding_gene FALSE TRUE AT1G71450.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G33760.1); similar to OSJNBa0058G03.2 [Oryza sativa (japonica cultivar-group)] (GB:CAD41044.1); similar to AP2 domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95397.1); similar to Os02g0656600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047627.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.111588645795608 -0.985926046046095 0.345585306361899 1 -0.140131091089636 3.76671215911667 -0.111588645795608 0.130327885774763
AT2G47950_at 1.62316273791374 1.49638647916552 1.85070263862489 1.74524824830573 1.79476968018207 1.92458617560428 1.66642291273402 1.74343555755680 2.08079135234559 1.9403416619671 1.70696520699778 2.01362541256472 1.71794805817133 1.80721982220028 1.79374304592869 2.04844285513737 2.11975425995842 2.17378210928539 1.83750632608977 0.184894828693244 0.174595347255043 0.174595347255043 0.174839339866602 0.180597936590836 0.175000200927685 0.188391177134379 0.175531979855714 0.174595347255043 0.181560087500265 0.181319074391943 0.183336845122469 0.179921599539619 0.191331193425601 0.175169357118425 0.181871302255998 0.181838586153224 0.177437418007473 0.177836220360396 2 2 + 19631366 19631668 19631486.727 19631280 19631879 + gene protein_coding_gene FALSE TRUE AT2G47950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62990.1) 0.083140039991534 0.985560893819318 0.345756611918926 1 -0.140463612582796 3.66837174196821 0.083140039991534 0.038686956744638
AT4G29990_at 2.56515899346138 2.57453305089973 2.33147125634493 2.49269581591662 2.66242435577780 2.37428098011346 2.64216413445525 2.28073579093106 2.47440319261644 2.99606588202822 2.91007757948281 2.52146606281282 2.62938569231476 2.58808572151755 2.16235688746431 2.43601004050830 2.81656402649336 2.59062838096854 2.69088210490841 0.187979114235365 0.192464489704346 0.191773234795072 0.188838626481104 0.188279219006597 0.188559194330556 0.189764061460751 0.189187924868732 0.197143151846938 0.191633746820557 0.190337957846564 0.190959623848271 0.186374855185273 0.189184166303157 0.194575807954374 0.193153564323978 0.19974231599893 0.188300918531060 0.190755030270410 4 4|0 -|/ 14665813 14666461 14666166.1 14665697 14670036 - gene protein_coding_gene FALSE TRUE AT4G29990.1 light repressible receptor protein kinase similar to FRK1 (FLG22-INDUCED RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT2G19190.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19230.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19210.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.094529242318852 -0.985246196412677 0.345904296961065 1 -0.140750106641836 5.14156914330236 -0.094529242318852 0.0847328870696387
AT1G62970_at 4.21205928361827 4.64547898063565 4.49251585757434 4.55925850950358 4.28028900099246 4.63746418777845 4.37648785421206 4.29544170918057 5.16348119070417 4.76752013771474 4.27285439273484 4.36566728640816 4.51960703569288 4.41383173681191 4.59321740887837 4.3730434466693 4.85165726175667 4.83464541315669 4.57890255977170 0.199079884334328 0.193140393556813 0.184659837171268 0.189721085117486 0.209909780932308 0.196414587097933 0.191710167610858 0.196804836864947 0.184659837171268 0.184659837171268 0.185120354379444 0.196023132718911 0.198556450426325 0.196812132221229 0.18537715777962 0.184659837171268 0.18510231731842 0.202417453200896 0.192898965566051 1 1 + 23328901 23329649 23329078.2 23326982 23329718 + gene protein_coding_gene FALSE TRUE AT1G62970.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G64360.4); similar to Nahoda protein [Drosophila melanogaster] (GB:CAC20094.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0992770997913474 -0.984921859315754 0.346056553876518 1 -0.141045297645867 9.11972448651716 -0.0992770997913474 0.0988761428088782
AT1G56540_at 1.32859389753526 1.24237761780095 1.26397172034794 1.37903956200689 1.06096337375030 1.28561074948223 0.63619838113567 1.05657894864843 2.09112378552348 1.13133217173774 1.45189714334793 1.38713379505956 1.37142618391532 1.20154179461169 0.99494530057076 1.42117228383586 0.857023178135145 1.29483204773154 1.63387244785341 0.203900947929368 0.213379133306004 0.210607783909783 0.208995019132683 0.204183693114314 0.209386506836792 0.20642663540158 0.208689759662524 0.210952244390196 0.211028122084399 0.206926989871479 0.210797765206128 0.203728702002378 0.206091818767351 0.203728702002378 0.204356926823118 0.207560072344709 0.208341920990015 0.205397364087545 1 1 + 21188402 21188933 21188663.545 21185329 21188971 + gene protein_coding_gene FALSE TRUE AT1G56540.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G16870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56510.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56520.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.0949102645102333 -0.984447925767602 0.346279125097759 1 -0.141476497902672 2.58980308180805 -0.0949102645102333 0.0861562198565706
AT3G49380_at 1.68705914019961 1.45533347421833 1.80416148507824 1.72222883374915 1.53071002809794 1.62996394883871 1.71489018420872 1.38254682584253 1.97984607860122 2.14918097941263 1.99743161434687 2.15192560524148 1.90905231406581 1.91321376207094 1.87265808930709 2.10801094776356 1.63095490623718 2.19189789813113 1.57588182533466 0.205052511452021 0.196734932452777 0.198049224174552 0.200460744693332 0.199944523999321 0.204481619995385 0.196714527158322 0.198853846349316 0.204939660584683 0.200346308518585 0.209321690635655 0.195912567998698 0.205949493466083 0.208608936247924 0.197861710031567 0.207283840977232 0.204050344353718 0.208592270539590 0.197053118610038 3 3 - 18322941 18323551 18323262.545 18322894 18324475 - gene protein_coding_gene FALSE TRUE AT3G49380.1 IQD15 (IQ-domain 15); calmodulin binding similar to IQD17 (IQ-domain 17), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G00820.1); similar to IQ calmodulin-binding re (GB:ABE86306.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to IQ calmodulin-binding re (GB:ABE78154.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.0910327577598574 0.984175949437459 0.346406899112609 1 -0.141723873678207 3.55262645832666 0.0910327577598574 0.0735661853190314
AT2G40570_at 5.40097327651243 5.93454157167602 5.32023418038016 5.45662839211378 5.96786657082998 5.4873296871069 5.7733263557479 5.90226730856421 4.26411464188808 4.7719812132174 4.4435864192681 4.86934594742449 4.90362220858054 4.11434619028505 4.41892525713657 4.64345809692716 5.13694034674615 3.71855738601651 4.63654045909658 0.234102506533222 0.228496181623308 0.233154726305414 0.230013080421296 0.231684674432977 0.230002633438437 0.233829424073488 0.23210512687518 0.230812545775971 0.236463558707568 0.234054381634679 0.228496181623308 0.232888144713034 0.238434844014339 0.229025214891750 0.228496181623308 0.240619809095134 0.242337797277323 0.239411086244929 2 2 + 16949280 16950334 16949694.5 16947913 16950570 + gene protein_coding_gene FALSE TRUE AT2G40570.1|AT2G40570.2 initiator tRNA phosphoribosyl transferase family protein|transferase, transferring pentosyl groups similar to hypothetical protein DDBDRAFT_0187104 [Dictyostelium discoideum AX4] (GB:XP_637631.1); similar to Os06g0555500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057852.1); contains InterPro domain Initiator tRNA phosphoribosyl transferase; (InterPro:IPR007306) -0.110605063518358 -0.984163250663307 0.346412865813038 1 -0.141735422458701 10.1997175026741 -0.110605063518358 0.128438738681085
AT2G15010_at 2.15340395364639 2.42834338743467 2.20716314927206 2.7825068351546 1.99733469636661 2.03169035735739 2.74212850985438 2.40832162740522 2.37994861744109 2.43478281291183 2.48977898923389 2.29880683446502 2.47109199230681 2.45908637153202 2.25673615563944 2.57043256716338 2.56561300497405 2.37442308111202 2.61175169842434 0.217661309560196 0.217148437538882 0.223933350003893 0.226518324291549 0.227191475423171 0.226760883367930 0.216109493209381 0.218408318977821 0.217335214392806 0.224198368666978 0.228598355187023 0.216592852892385 0.221579038621973 0.216272998251808 0.214755788464225 0.218768855296597 0.223060853506226 0.214265481054157 0.220689384684087 2 2 + 6491528 6492022 6491710.727 6491461 6492234 + gene protein_coding_gene FALSE TRUE AT2G15010.1 thionin, putative Identical to Probable thionin-2.3 precursor [Contains: Probable thionin-2.3; Acidic protein] [Arabidopsis Thaliana] (GB:Q8VZK8;GB:Q9ZUL0); similar to THI2.2 (THIONIN 2.2), toxin receptor binding [Arabidopsis thaliana] (TAIR:AT5G36910.1); similar to crambin precursor=thionin variant Thi2Ca12 [Crambe abyssinica, seeds, Peptide Partial, 135 aa] (GB:AAB33011.1); contains InterPro domain Thionin; (InterPro:IPR001010) -0.109061930876630 -0.984088825592358 0.346447836998947 1 -0.141803105170365 4.79948181496762 -0.109061930876630 0.124697791414431
AT3G27980_at -0.125587904633335 0.209709781193067 -0.268700873897088 -0.194151535980924 -0.0837608717877111 0.0529463445621023 0.149165071845284 0.0846058828554151 0.250414329622793 -0.341077645015703 -0.155336560253974 -0.0575610386781143 0.0671348904229717 0.254590572287693 -0.262720922343799 -0.124234187004357 0.0274727146432917 -0.143017890005501 -0.133786366419245 0.177017874155530 0.179614840719673 0.182300702759854 0.180283545525970 0.186185256252425 0.175487198622053 0.176727951645371 0.179251751105185 0.189721524705387 0.181365310520983 0.179379548837984 0.184982842405484 0.182658945151965 0.185285618302341 0.185148734172168 0.177567858160029 0.176860808162466 0.178260766883277 0.180748486791745 3 3 + 10396614 10396715 10396700.909 10395141 10397098 + gene protein_coding_gene FALSE TRUE AT3G27980.1 pectinesterase family protein similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectinesterase [Arabidopsis thaliana] (TAIR:AT4G03930.1); similar to Pectinesterase-1 precursor (Pectin methylesterase 1) (PE 1) (GB:P14280); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.0886412170517174 -0.983894269826138 0.346539267866438 1 -0.141980015709615 -0.0839845698406615 -0.0886412170517174 0.0649448339333558
AT4G21890_at 2.72853909444747 2.66662602212568 2.59843018068865 3.10749344856992 2.41742675192718 2.65523945308821 3.63173023312230 3.45747539262188 2.83501364669997 2.99227535467382 3.11987779525155 3.04820049585289 3.42787227239311 3.09425077475689 3.04318348361881 2.91774150912789 2.94478980706454 3.37777995949133 2.86102622172037 0.187347860609568 0.183338812430905 0.183338812430905 0.189566385013795 0.189021250254709 0.193005015934205 0.191770960014787 0.185936659690782 0.191970242922400 0.184731585985115 0.188031087739211 0.183981365012338 0.1919269219444 0.183338812430905 0.190970958702605 0.186304018213563 0.186296060619198 0.189333873793668 0.189166042072118 4 4 - 11611886 11612428 11612119.727 11611855 11612915 - gene protein_coding_gene FALSE TRUE AT4G21890.1 unknown protein -0.100419144590468 -0.983831756593353 0.346568649488238 1 -0.14203685319055 5.91677861535358 -0.100419144590468 0.102365639825312
AT1G12650_at 4.57819197507655 5.35746503362859 5.10992117227425 5.29382354973813 5.43588832570942 5.40055890022054 4.70438939694181 5.54239876879961 4.34154955431982 4.47469294671295 4.2985775787212 4.94979104570872 4.57033733009813 4.65298352902535 4.34683397147727 4.41569435085747 4.68818271856712 3.96104204196748 4.57051556430113 0.238242473374852 0.237360375618472 0.232325859445903 0.2253849935594 0.227280932684475 0.233120057251044 0.223878532519466 0.231408890785539 0.237768341790182 0.228657505051791 0.231205106705486 0.222978280194568 0.226142521846862 0.234976608665127 0.220126557344203 0.222700350594035 0.227023900074902 0.23217546183089 0.228214371099739 1 1|0 +|/ 4306424 4307643 4307137.286 4305931 4308003 + gene protein_coding_gene FALSE TRUE AT1G12650.1|AT1G12650.2|AT1G12650.3|AT1G12650.4 similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_783665.2); similar to Os09g0525200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063717.1); contains InterPro domain Protein of unknown function DUF947; (InterPro:IPR009292) 0.143807162866076 0.983760604248145 0.346602093753397 1 -0.142101541794364 9.65167114492235 0.143807162866076 0.200668390221314
AT4G13570_at 1.29113229362609 1.36330222507819 1.87671365261154 1.51760082340262 1.34174969575895 1.19845734536142 1.54318302928464 1.77191938608542 1.58503895369713 2.00406818949721 1.84303549680374 1.3537722471584 1.48198031328103 1.38678622122986 1.31235591813501 1.52313369594585 1.59213524674187 1.42962326770983 1.41039362331846 0.219496340406257 0.223850569339821 0.238256270126229 0.221891123858421 0.219496340406257 0.220423743704587 0.225710275439275 0.226721804179315 0.233052178581538 0.219496340406257 0.219496340406257 0.219496340406257 0.227789013512097 0.221359969592011 0.226216526519119 0.22622478348659 0.223028979554288 0.231259248681543 0.223491789996021 4 0|4 /|+ 7885431 7885628 7885524.143 7884512 7885660 + gene protein_coding_gene FALSE TRUE AT4G13570.1 histone H2A, putative Identical to Putative histone H2A.8 (H2A-4) (HTA4) [Arabidopsis Thaliana] (GB:Q9T0H7); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT2G38810.2); similar to histone H2A.F/Z [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to Os03g0162200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049049.1); similar to Os10g0418000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064611.1); similar to H2A protein [Oryza sativa] (GB:AAF07182.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0924506544317599 -0.983003611746295 0.346958053904255 1 -0.142789527631285 3.06643383459109 -0.0924506544317599 0.0787395947110755
AT3G50420_at 2.31653428757697 2.40924475204555 2.42212672491337 2.32285640014272 2.05340547582357 1.96263764784730 1.95809168917409 1.92442713667868 1.97170158852931 2.00837019136878 2.18393598440833 2.32278972468061 1.97633590346944 2.02800365859975 2.11444720161320 2.21099387409404 2.25247347494001 2.53143138475912 2.25323670145907 0.166116825652570 0.168215154957165 0.170336148601117 0.169723091837732 0.166237399625423 0.169130202703519 0.172950056107322 0.172120548563134 0.167903609014728 0.171925445245692 0.172779210444242 0.170264936117966 0.168886847516486 0.171875481486339 0.176170940438117 0.169655903722396 0.176221661218464 0.173165645296646 0.171685154457162 3 3 - 18721946 18722410 18722213.818 18721852 18724630 - gene protein_coding_gene FALSE TRUE AT3G50420.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to H0322F07.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67767.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0814820014238804 0.982896496379983 0.347008444162044 1 -0.142886843224201 4.31132596157842 0.0814820014238804 0.0288653562251305
AT2G41010_at 2.90988586048266 2.96793204696926 3.05353081745567 2.90355615468286 2.84102123410347 3.02100397874033 3.41645189558954 3.80437229769236 3.58991603935048 3.57206103758503 3.69325229615064 3.74766368699630 3.61445642160525 3.48081968308837 3.54419175361678 3.98513427525383 3.64448942931249 3.61354282508967 3.42969971566471 0.233589193256638 0.228082303507728 0.232913842441964 0.233410227906894 0.228968228087656 0.236511980453176 0.23565044597573 0.231037132240595 0.238814509819941 0.239368448764835 0.233079869934878 0.227593071674738 0.227256087701558 0.236728730170978 0.23032928488032 0.228473854673886 0.239582284602900 0.233981757916914 0.232848660482514 2 2 - 17121112 17121495 17121308.273 17120944 17121882 - gene protein_coding_gene FALSE TRUE AT2G41010.1 ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA); calmodulin binding Encodes a novel calmodulin binding protein whose gene expression is induced by dehydration and ionic (salt) and non-ionic (mannitol) osmotic stress. Lines over-expressing this gene are more sensitive and anti-sense lines are more tolerant to osmotic stress, suggesting this gene may be a negative regulator of response to osmotic stress. similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT3G56880.1); similar to VQ [Medicago truncatula] (GB:ABD32874.1); contains InterPro domain VQ; (InterPro:IPR008889) -0.0924988067077224 -0.982468057388172 0.347210047823981 1 -0.143275997783114 6.71272064934247 -0.0924988067077224 0.0790649215489167
AT1G09010_at 8.33280678482578 8.29593369826542 8.34294218315816 8.00938374865924 9.0698983030264 8.23397767567135 8.7496900157016 8.44491450516364 8.62052178359274 8.89686379328304 8.48409361877193 8.61624115186505 8.78897143964277 8.85463580412118 8.10668326840082 8.66102474869785 7.96987730233239 8.79517660059103 8.71871121102702 0.187086463444489 0.174884184153292 0.191663276040303 0.192307828939477 0.186845109939737 0.178084971012299 0.181594344286840 0.188515957872822 0.192514679939644 0.185440160306266 0.180427611324065 0.177007136470265 0.179671474213995 0.197606495813287 0.185154456553444 0.186164422035172 0.204788958255936 0.180893239316889 0.183908127083695 1 1 - 2895301 2895795 2895561.909 2895169 2899387 - gene protein_coding_gene FALSE TRUE AT1G09010.1 glycoside hydrolase family 2 protein Identical to Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152) (Endo-beta- mannosidase) (AtEBM) [Contains: Mannosylglycoprotein endo-beta- mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit] (EBM) [Arabidopsis Thaliana] (GB:Q75W54;GB:O04029); similar to endo-beta-mannosidase [Brassica oleracea] (GB:BAE97370.1); similar to endo-beta-mannosidase [Lilium lon (GB:BAD89079.2); similar to glycosyl hydrolase [Gossypium hirsutum] (GB:AAO27794.1); contains InterPro domain Glycoside hydrolase family 2, sugar binding; (InterPro:IPR006104); contains InterPro domain Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich; (InterPro:IPR006102); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.12628168876252 -0.982466503585002 0.347210779127128 1 -0.143277408860442 17.0749201581942 -0.12628168876252 0.164563271450201
AT1G51860_at 3.87396152158761 3.87767987217197 3.47424463400077 3.23879242091064 2.08819375507033 2.49801923405918 2.15658921903001 1.20451276841020 2.89798442287634 1.50485480145035 1.76728897767518 1.96655715147413 1.56279979124581 1.39756043090936 1.86151538254698 1.90724158235174 1.59156030459127 1.99782393448274 1.8190082241321 0.206955379722507 0.19871122853986 0.193169797399808 0.194903863360664 0.188052067149428 0.192995478720975 0.191260894075384 0.199670826204699 0.188052067149428 0.202195842049370 0.203560577707787 0.189013483148405 0.196383056988772 0.192094664263401 0.189540298420872 0.190701978745435 0.204684397620136 0.198304284408621 0.188052067149428 1 1 - 19261306 19261850 19261531.455 19261303 19265148 - gene protein_coding_gene FALSE TRUE AT1G51860.1 leucine-rich repeat protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G51870.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51890.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51880.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.135389519683165 -0.982093694774861 0.347386275320725 1 -0.143615919844008 4.71674547510305 -0.135389519683165 0.183948077133050
AT1G17300_at 1.77856106308110 1.82310281992478 2.1183944958714 1.81751168174181 2.02950656068186 1.72073170200882 1.99204308870922 1.97063859601039 2.16608944783444 2.28284420523069 2.10566385118702 1.69403261527878 2.35610231674442 2.07239201009022 1.96611928188347 1.72765698437455 2.4027718740384 2.27566098462489 2.41510690615426 0.192133496572822 0.183530955054846 0.184716166634682 0.186735692715567 0.181346287004122 0.186506515547627 0.183110849450094 0.181175708241023 0.187128717411135 0.184877103193379 0.185091405279540 0.180612640660894 0.193799483129034 0.180612640660894 0.18391170895225 0.18289073322931 0.180979703875602 0.180612640660894 0.180612640660894 1 1|0 +|/ 5926989 5927405 5927144.333 5926987 5927777 + gene protein_coding_gene FALSE TRUE AT1G17300.1 similar to ALAAT1 (ALANINE AMINOTRANSFERAS), alanine transaminase [Arabidopsis thaliana] (TAIR:AT1G17290.1) -0.0912569059087389 -0.98180932403686 0.347520183471083 1 -0.143874057710919 4.08784300576243 -0.0912569059087389 0.0750974500297272
AT4G08460_at 6.57633322479798 6.21195927433322 6.2793570562212 6.08027458451951 6.59406723987452 6.4402744667652 6.09882541535065 5.79433433010467 6.52778972008684 5.68081983854519 6.21880883475805 6.16952573475543 6.1177342019245 6.19939033625031 6.17198136679068 6.32964948056506 6.28124345059395 6.10170596098081 6.34072371219245 0.157335382305815 0.153281183532431 0.152554482966923 0.160271774027321 0.150306938065125 0.162288977202755 0.156870609603855 0.156961353467372 0.156484390986002 0.156278185318763 0.150306938065125 0.153012041171300 0.158698390878677 0.155267685625050 0.157675737667240 0.162676704484933 0.160308797940557 0.158622990866597 0.159109837849863 4 4 - 5377403 5377941 5377668.545 5377120 5380615 - gene protein_coding_gene FALSE TRUE AT4G08460.1|AT4G08460.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77770.2); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.0968870531255046 0.9814553920904 0.347686899887801 1 -0.144195253747035 12.4503612045470 0.0968870531255046 0.0929948238684337
AT2G17530_at 4.94774842660066 5.18275315648815 5.0419837623933 4.38821741329717 5.69127139169869 4.93569893309181 5.28943607502643 4.10381538939617 4.41466937828422 4.59650944283997 4.97391782490002 4.80708264215368 4.87029696903588 5.45180187726797 4.77832895410918 5.38462358294825 4.58820069973825 4.34040170705007 5.0069285622362 0.213742378221154 0.210562673493695 0.214097614222996 0.217455245010688 0.211449092729428 0.223668720430326 0.218572699991843 0.216571790623303 0.226320823426608 0.210247951369298 0.211949425886593 0.221289665372863 0.214918830157711 0.225325142913628 0.210333452323180 0.213657235093090 0.230876553550535 0.231516127995557 0.222890527900583 2 2 + 7634979 7635603 7635317 7633440 7636231 + gene protein_coding_gene FALSE TRUE AT2G17530.1|AT2G17530.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35500.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to Os09g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063873.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35500.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to Os09g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063873.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.179991967136338 0.981352829020782 0.347735222144529 1 -0.144288312696700 9.73363269013432 0.179991967136338 0.271382810448286
AT2G17260_at 3.00651426505311 2.58616954334694 2.76636289343999 3.00858435561125 3.10601117289540 3.03353167924077 3.59078261710898 3.49446684611346 3.14064838826697 3.13691025210949 3.30489695997679 3.69867186566447 3.77451151765959 3.63622715779454 3.27732816928527 3.42132846839511 3.82513493812905 3.39764092989869 3.20741139730176 0.190573891887542 0.196035163284034 0.186567631611194 0.188565104319953 0.190517223139129 0.187221046117615 0.190473709882741 0.194470752555688 0.189432290584397 0.188697926315125 0.186157168075639 0.185606256466753 0.186909436773635 0.19329904951109 0.188833394222728 0.189744780545039 0.192477949281347 0.193899857174300 0.19044660701984 2 2 + 7514717 7515321 7515027.182 7511838 7515476 + gene protein_coding_gene FALSE TRUE AT2G17260.1 GLR2 (GLUTAMATE RECEPTOR 2) Encodes a glutamate receptor. Identical to Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) (AtGLR2) (GLR3.1) [Arabidopsis Thaliana] (GB:Q7XJL2;GB:O49119;GB:Q9ZT36); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to GLUR2 (Glutamate receptor 2) [Arabidopsis thaliana] (TAIR:AT4G35290.1); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to ligand gated channel-like protein [Brassica napus] (GB:AAF21901.1); similar to Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) (AtGLR2) (GB:Q7XJL2); similar to glutamate receptor [Raphanus sativus var. sativus] (GB:AAQ02674.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) 0.094725014507797 0.98134689901831 0.347738016195113 1 -0.144293692943704 6.4258650116395 0.094725014507797 0.0865084541761166
AT2G01240_at 2.38010150388135 2.58627090915554 2.25083009072274 1.9825246732171 1.7843601333305 2.36081507589692 2.26717023149516 1.98238864405963 2.77061489595791 2.63591396711404 2.81100354930979 2.52663797256514 2.66847783728784 2.87857760669239 2.92868446741699 2.70759241229716 2.34465991640445 3.29109782610116 2.92924942839795 0.21031100351208 0.207895691278403 0.228267316291154 0.209688299237115 0.230931169768435 0.215897528540036 0.221189306738853 0.207895691278403 0.215476594944573 0.215589057440129 0.208186242892223 0.214798982273897 0.220026145665654 0.211593225104184 0.218633890280435 0.207895691278403 0.222174794888534 0.223538259731711 0.215203257867472 2 2 - 128439 129198 128828.636 128439 129255 - gene protein_coding_gene FALSE TRUE AT2G01240.1 reticulon family protein (RTNLB15) similar to reticulon family protein [Arabidopsis thaliana] (TAIR:AT3G10915.3); similar to reticulon [Hordeum vulgare] (GB:ABB51093.1); contains InterPro domain Reticulon; (InterPro:IPR003388) -0.109175822085018 -0.981308619247605 0.347756052940231 1 -0.144328423248964 4.9733997638862 -0.109175822085018 0.125735196817390
AT1G12320_at 7.190686535371 7.3934927027726 7.22440379945493 7.06712987572548 7.10238591542615 6.90266282113748 6.10911713860781 6.14347001024794 6.05908650937321 6.08042508415443 5.92276093659519 5.55298605476416 5.6837854260626 5.93032823950988 5.20442565456127 6.33144214944682 5.15928254255006 5.46027369463723 6.44041309824122 0.191374110828316 0.194811371790183 0.185776356603504 0.186269219848661 0.189791215614606 0.191286919159153 0.183921258524932 0.183921258524932 0.19442273148986 0.191038371391718 0.183921258524932 0.183921258524932 0.193413057778872 0.183921258524932 0.192148988272666 0.183921258524932 0.196306279834049 0.192450196597120 0.192566773136089 1 1 + 4189630 4190103 4189829.636 4189353 4190340 + gene protein_coding_gene FALSE TRUE AT1G12320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62840.1); similar to Os02g0455400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046773.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19988.1); contains InterPro domain Protein of unknown function DUF1442; (InterPro:IPR009902) -0.0863468185687775 -0.981254769821607 0.347781426979743 1 -0.144377277632677 12.8161530087707 -0.0863468185687775 0.0565904263988342
AT2G02520_at 0.411976373091528 0.519788334494573 0.575214482711173 0.219781668120141 0.333505499547243 0.601960754201902 0.491215840635345 0.338403921300983 0.837407367238464 0.750020965136526 1.10989921083503 0.383375438174730 0.372218632896982 0.52385807688156 0.471339210704476 0.664528182110524 0.282056305838478 0.53472038675462 0.580212333337098 0.174097429495318 0.168176699950746 0.163620443219689 0.166727589813955 0.1649715207755 0.163620443219689 0.172682809522129 0.178050604128431 0.171977141597112 0.180321369579052 0.171229137405139 0.17219977221179 0.163620443219689 0.169525272095866 0.165316057509043 0.174537006809608 0.172473940589656 0.17892152718864 0.179185487124618 2 0|2 /|- 676838 677293 677000.333 676770 678144 - gene protein_coding_gene FALSE TRUE AT2G02520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43730.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.0937639871408194 -0.981009769045852 0.347896889190369 1 -0.144599524361286 1.06912901881048 -0.0937639871408194 0.0836009171888276
AT1G64060_at 5.40038198714216 5.33287008444978 5.81363421782731 5.729568231596 4.95788131695174 4.5903786371051 5.85013309111958 5.38075456834027 4.16709186170905 4.37033822352852 4.62618571919360 4.19238471305999 4.7873555799306 4.3241078809944 4.46675518977352 4.55512654727170 4.90023416073739 5.05557444759145 4.04230733035936 0.236521984931058 0.231736509295071 0.236763723863630 0.238455396622429 0.231736509295071 0.238679742756116 0.239355854116000 0.236469423594336 0.243342922387401 0.237064633743311 0.238089770206779 0.236654239647165 0.231736509295071 0.238807868293963 0.240645684679524 0.235997857322303 0.233818738336500 0.233537823679673 0.23623223640807 1 1|0 +|/ 23778863 23779403 23779126.429 23773437 23780594 + gene protein_coding_gene FALSE TRUE AT1G64060.1 ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. similar to respiratory burst oxidase, putative / NADPH oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G11230.1); similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to respiratory burst oxidase protein E (RbohE) / NADPH oxidase [Arabidopsis thaliana] (TAIR:AT1G19230.1); similar to respiratory burst oxidase protein F [Solanum tuberosum] (GB:BAB84124.1); similar to respiratory burst oxydase [Solanum tuberosum] (GB:BAC06825.1); similar to respiratory burst oxidase homolog [Nicotiana benthamiana] (GB:BAC56864.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623) 0.101025196363597 0.98094568636133 0.347927094212553 1 -0.144657647919375 9.78530593432552 0.101025196363597 0.104837332956277
AT3G16540_at 1.21368449173564 1.40964531580390 1.69531397551782 1.79072408977603 1.53727430146894 1.74585844280238 1.65906993413146 1.55030945400199 2.02988327732147 1.78263688159825 1.59721941693900 1.8516281096617 1.31409787454108 1.26881117071003 1.73217207294233 1.32103999229437 1.70108903368261 1.35489844472565 1.95905667666844 0.194686804722006 0.191784838296577 0.195805548562104 0.194098521603132 0.194128191509636 0.195165389439622 0.201632820743414 0.203328911323396 0.199816412223029 0.199183087804727 0.202232605719046 0.192507763894620 0.201628321547031 0.194167686685738 0.191911554724650 0.193894584826572 0.201830043431872 0.196594924105643 0.198003494170447 3 3|0 -|/ 5626298 5627326 5626553.5 5626296 5628863 - gene protein_coding_gene FALSE TRUE AT3G16540.1 DEGP11 (DEGP PROTEASE 11); serine-type peptidase/ trypsin Encodes a putative DegP protease. Identical to Putative protease Do-like 11, mitochondrial precursor (EC 3.4.21.-) (DEGP11) [Arabidopsis Thaliana] (GB:Q9LK71); similar to DEGP12, serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT3G16550.1); similar to Os06g0234100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057235.1); similar to Os05g0417100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055560.1); similar to hypothetical protein DDBDRAFT_0204001 [Dictyostelium discoideum AX4] (GB:XP_640805.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.0860620136429561 -0.980877712971719 0.347959135179097 1 -0.144719296958566 3.29597423047134 -0.0860620136429561 0.0554963185258405
AT3G29690_at 2.28567100131396 2.15713491095286 2.74202117876777 2.58331013116082 1.80920447130592 2.05049793042765 1.73227939216617 2.50684633111718 2.39054365748329 2.46939279123651 2.00095812087869 2.06731737232107 2.17245605395029 1.81986920075949 2.14357544802953 2.06741533606240 2.71283688754514 2.03268502281728 2.60174406571394 0.223540404710462 0.21893976737875 0.223300491118657 0.223136587152919 0.219758208839859 0.217245085232292 0.217245085232292 0.224680234757309 0.221065526895962 0.217632124987899 0.221944317685189 0.227533941579291 0.231227917878308 0.228972171595958 0.223944535983191 0.224085726206754 0.224950053135214 0.218531752558893 0.217245085232292 3 0|3 /|- 11543270 11543682 11543485.875 11543249 11544028 - gene protein_coding_gene FALSE TRUE AT3G29690.1 transferase-related similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G29680.1); similar to quercetin 3-O-glucoside-6''-O-malonyltransferase [Verbena x hybrida] (GB:AAS77402.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.117156069410549 -0.980694971751044 0.348045285474953 1 -0.144885018180024 4.54055367762157 -0.117156069410549 0.144776253323374
AT2G46660_at 1.93924608090346 2.54752750053074 2.45647106454485 2.60482307510125 2.73789171599897 2.80918391144231 3.07845816135033 3.21787615949633 2.61943697001513 2.86081682011930 2.29203647520647 3.15084015243301 3.12247008452339 2.87061950891733 2.99269238151066 3.53853517369264 3.20743850379412 2.65428086999423 2.70340995787957 0.226071120411409 0.228116845973390 0.225456467186872 0.222272742451526 0.224393646821534 0.228411641180706 0.221950026090704 0.223360602889759 0.232890206724457 0.224581818813199 0.221950026090704 0.223249222111577 0.225483171225074 0.228149515563512 0.225382640885722 0.229036609256195 0.232628042185982 0.223569807442287 0.230195527636545 2 2 - 19160680 19161221 19160971.727 19160398 19162559 - gene protein_coding_gene FALSE TRUE AT2G46660.1 CYP78A6 (cytochrome P450, family 78, subfamily A, polypeptide 6); oxygen binding member of CYP78A similar to CYP78A9 (CYTOCHROME P450 78A9), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G61880.1); similar to CYP78A8 (cytochrome P450, family 78, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01190.1); similar to Cytochrome P450 78A3 (GB:O48927); similar to cytochrome P450 monooxygenase CYP78A29 [Medicago truncatula] (GB:ABC59089.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.103520846977973 0.980292799831377 0.34823493726784 1 -0.145249643236519 5.52718573855285 0.103520846977973 0.111688595151060
AT4G31420_at 8.28762694982 8.31056524474837 8.23768682766243 8.12478269514668 8.73877047350126 8.46992435956573 7.8127828041035 7.9766164034852 7.31019283972216 7.95667428993623 7.41545224544116 7.6640791901831 7.41742967878523 7.53272473542641 7.35867596669497 7.61566018700595 7.30750710361027 7.49832222794357 7.53017455477552 0.198525583758805 0.191535892399912 0.198562597736124 0.19235766235557 0.191587217736277 0.196704359897184 0.195853361178385 0.192394637659027 0.209353679896942 0.194006076641094 0.195508200994385 0.192456564563982 0.196240518141058 0.186041292328648 0.192041804906448 0.189207906903655 0.194577941989126 0.194080419825526 0.192719694917396 4 4|0 -|/ 15245993 15246827 15246367.1 15245822 15247933 - gene protein_coding_gene FALSE TRUE AT4G31420.1|AT4G31420.2 zinc finger (C2H2 type) family protein similar to FZF, transcription factor [Arabidopsis thaliana] (TAIR:AT2G24500.1); similar to Os06g0693500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058435.1); similar to putative C2H2-type zinc finger protein [Brassica rapa subsp. pekinensis] (GB:AAO32058.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.0865553802523928 0.979830306234901 0.348453127646709 1 -0.145668805784454 15.7824671256030 0.0865553802523928 0.0580167379414867
AT3G55980_at 7.53857205112928 7.87384901951098 8.10797470688934 8.1973975410336 7.15417894387479 7.2069015271138 6.55562325152798 6.84010469903543 7.43978152098717 6.014648176611 6.421460152866 6.73922605473067 5.70085232356047 6.46484657381278 6.5766860953999 6.02671028202554 5.68284126416855 6.8120693418869 6.29666489508431 0.238398972382319 0.23616551411686 0.238627071384692 0.241415903945646 0.235114368913624 0.239803942907967 0.239725156592305 0.238658642971956 0.239800149422279 0.235114368913624 0.235605682209396 0.242037044580345 0.241324156327651 0.243239759871094 0.235913751423924 0.239726157774242 0.244696092389575 0.241039545051094 0.238957396455681 3 3 + 20788999 20789517 20789219.545 20787274 20789821 + gene protein_coding_gene FALSE TRUE AT3G55980.1 zinc finger (CCCH-type) family protein similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.0919821189612429 0.979795987081931 0.348469322331676 1 -0.145699903069445 13.8777175718230 0.0919821189612429 0.078184797379664
AT1G55990_at 1.37712428238689 1.55904960977554 1.99852410659079 1.99827893203984 1.67516731075125 1.54007433766424 1.22691773846260 1.55273991273628 2.06866811569171 2.29538178521385 1.74671909468905 1.50740388055011 1.71188418190087 1.83590266971186 2.07962616979543 1.74708216721673 1.67845735805020 2.14206738962930 1.64107266534198 0.198450947485056 0.187770553988343 0.192182338676289 0.194015921676031 0.187606555335847 0.190661971755233 0.198658938758678 0.187606555335847 0.187606555335847 0.195073894732001 0.188041370573074 0.187606555335847 0.187606555335847 0.197721767842706 0.197118986820899 0.192384820420879 0.187606555335847 0.192060101930621 0.187606555335847 1 1 - 20946152 20946224 20946185 20946152 20946616 - gene protein_coding_gene FALSE TRUE AT1G55990.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G33610.1) 0.0892443138908181 0.979577120980771 0.348572614761277 1 -0.145898200967245 3.51990972181366 0.0892443138908181 0.0686804853682818
AT1G21500_at 10.5062663869678 10.7297979203403 10.2316694158247 10.2472507550811 10.5450491743279 10.4989834613607 10.9668042635557 11.2197407871027 11.8115683532571 11.6255303131742 12.3099407707905 12.2515561063709 11.7890445975135 12.1102712241033 12.2828841481847 12.0750064375579 11.2861557865108 12.0187032709576 11.7050869915711 0.0822997100709336 0.0793469560308652 0.0836446716667554 0.0847635109855242 0.0878041323627572 0.0887904979123143 0.0792095894183455 0.0819884408891417 0.0852444736701494 0.0843408759016366 0.0795470238062222 0.0788055518129216 0.0788055518129216 0.0909595940172913 0.0800088576963568 0.0807550081225177 0.0912245988563913 0.081654303138048 0.0823391698946075 1 1 - 7530050 7530823 7530230 7529871 7531014 - gene protein_coding_gene FALSE TRUE AT1G21500.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83904.1) -0.0867653655475853 -0.979506161502615 0.348606108394958 1 -0.145962484096028 22.4829488599449 -0.0867653655475853 0.0590185061703194
AT3G57390_at 2.9921549681624 3.16904612221795 3.66609692051703 3.28911397289381 3.69132647707516 3.69140354776395 3.0738108622458 2.88067950071636 3.09911530521431 3.43493555808349 3.29164277861334 3.23748138794046 3.05303023866003 3.09750154581055 2.88020290092915 2.62737620011121 3.08464428713542 3.13145972564651 3.72991855626833 0.191634093506803 0.200379674722283 0.18715000096285 0.193667476476439 0.189825010759936 0.193790974017717 0.185938469899721 0.187253641412157 0.191991967300058 0.192582705701486 0.189663897220551 0.198600082274791 0.195132645037767 0.186748824693893 0.189272328410504 0.189968850384045 0.19246679898426 0.185938469899721 0.191010139943806 3 3|0 +|/ 21245618 21246683 21246287.444 21244678 21246888 + gene protein_coding_gene FALSE TRUE AT3G57390.1|AT3G57390.2 AGL18 (AGAMOUS-LIKE 18); transcription factor encodes a MADS-box containing protein likely to be a transcription factor that is expressed in endosperm and developing gametophytes. The protein sequence is most similar to that of AGL15, which is expressed in developing embryos. similar to AGL15 (AGAMOUS-LIKE 15), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G13790.1); similar to MADS-box protein 9 [Petunia x hybrida] (GB:ABD77426.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)|similar to AGL15 (AGAMOUS-LIKE 15), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G13790.1); similar to MADS-box protein 9 [Petunia x hybrida] (GB:ABD77426.1); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.0923283047386572 0.979460457917295 0.348627682213563 1 -0.146003885543097 6.54257430792966 0.0923283047386572 0.079436869705912
AT1G31300_at 7.47063878375238 7.71960042248879 7.83338116432676 7.58201775210986 8.1535116473662 7.94805233917402 8.42129017028893 8.60519007779166 8.07725572182078 8.00317218385625 8.4093899908289 7.77251270667765 7.98002322925107 8.32486633387044 7.64254474322836 8.01385727429097 7.78843137281655 7.80522317924395 7.84669536454634 0.192838796836048 0.180331852163201 0.191894964158097 0.197197326277391 0.184201473232449 0.188940456868440 0.190075438149975 0.198505531531587 0.194331147235231 0.185075389752534 0.180980548068261 0.184056476343801 0.195333703976356 0.192679199324313 0.192699053296439 0.184556395352161 0.204277353919193 0.189151626234661 0.184755629939945 1 1|0 +|/ 11194735 11195626 11195080.625 11193616 11196293 + gene protein_coding_gene FALSE TRUE AT1G31300.1|AT1G31300.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19645.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53332.1); similar to Os05g0511000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056013.1); similar to Os03g0666700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050848.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Protein of unknown function DUF887, TLC-like; (InterPro:IPR010283) -0.091770395400681 -0.979327352308286 0.348690518609759 1 -0.146124452664128 15.9381172249209 -0.091770395400681 0.0776238745801823
AT4G14210_at 9.79709801608625 9.7945963905523 9.92313598647116 9.82452366045824 10.1453325845764 9.82629913121442 10.3925047179941 10.260926756288 10.1901760761800 10.3476923274400 10.1898451574402 10.2238714427230 10.2983351817811 10.1746666167277 10.0511666564419 10.5219786480627 10.3306806169066 10.1734471826656 10.3291035030991 0.0936421896064814 0.0902567308997091 0.0897428665765209 0.0969308743113548 0.093176651104852 0.0955665498863174 0.0897234750054594 0.0945456237993486 0.103971118415758 0.0932229447990513 0.0974808944665683 0.0915725919229746 0.0929440542707509 0.0970977345608271 0.0945913329113472 0.0929066821127163 0.101412248150136 0.0954944087991418 0.0921704294218283 4 4|0 -|/ 8190452 8191473 8190923.9 8190207 8195260 - gene protein_coding_gene FALSE TRUE AT4G14210.1|AT4G14210.2 PDS3 (PHYTOENE DESATURASE) Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid. Identical to Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.-) (Phytoene desaturase) (PDS) [Arabidopsis Thaliana] (GB:Q07356); similar to ZDS (ZETA-CAROTENE DESATURASE), carotene 7,8-desaturase [Arabidopsis thaliana] (TAIR:AT3G04870.2); similar to Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) (GB:P28554); similar to phytoene desaturase [Prunus armeniaca] (GB:AAX33347.1); similar to Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) (GB:P28553); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.0874751636397701 -0.978959854302786 0.348864049469803 1 -0.146457262308410 20.2627969421634 -0.0874751636397701 0.0621133071541879
AT2G18440_at 9.1179652121087 8.66560093547139 9.56311731105621 8.8133425585032 10.4374165108835 9.31027513488497 9.56016396853304 8.62364129020138 9.28136439512842 9.43338558581915 9.20996119855166 9.21396222527018 9.23282902982513 9.1394208406206 8.77348912266162 9.60667390669959 9.5153510309062 9.26261368826633 9.48110192052852 0.143117887558690 0.145994646942982 0.140561801432591 0.147943175972770 0.152022072353577 0.150802495609184 0.147869583196672 0.155964809951108 0.147867917840591 0.142022141515322 0.144790549093279 0.143846479971866 0.153324713374528 0.146508968097276 0.150680421031013 0.140843865235043 0.147478324409991 0.142092107856483 0.144208926516155 2 2 - 8003501 8003697 8003587.364 8002811 8004000 - gene protein_coding_gene FALSE TRUE AT2G18440.1 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15) Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product. 0.192432678555739 0.9788205109807 0.348929863126372 1 -0.146583425970581 18.5828928306264 0.192432678555739 0.295428085003089
AT1G74310_at 3.08528649151428 2.93704902856847 3.07512831992457 3.36450591709930 3.00310224742530 3.13705345841050 3.03462753108526 2.49630613472317 2.86571594950935 3.2198241055038 3.29022236869930 3.23922334091661 2.97092863252129 3.44529574505317 2.75678841811693 3.05763481284997 3.06843688843261 2.97344330630598 3.36600982725354 0.183087439752774 0.181086722940991 0.182795747576936 0.186829282968233 0.180100026229103 0.186805165007812 0.180100026229103 0.184000536930138 0.188875679277635 0.182813765860073 0.183031660955558 0.181483464432986 0.189998499744301 0.180100026229103 0.180100026229103 0.183554546958713 0.191964234537933 0.183480679796570 0.189301865455624 1 1|0 -|/ 27940434 27941035 27940781.8 27940169 27943851 - gene protein_coding_gene FALSE TRUE AT1G74310.1 ATHSP101 (HEAT SHOCK PROTEIN 101); ATP binding / ATPase Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature. Identical to Heat shock protein 101 (HSP101) [Arabidopsis Thaliana] (GB:P42730;GB:Q8W4F2;GB:Q9LE57); similar to heat shock protein 101, putative / HSP101, putative [Arabidopsis thaliana] (TAIR:AT4G14670.1); similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT5G15450.1); similar to CLPB-M/CLPB4/HSP98.7 (HEAT SHOCK PROTEIN 98.7), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT2G25140.1); similar to heat shock protein 101 [Vitis vinifera] (GB:AAX08108.1); similar to AtHSP101 (GB:AAA67927.1); similar to heat shock protein (GB:AAA66338.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Clp, N terminal; (InterPro:IPR004176); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.103180125465940 0.97855902135877 0.349053392378809 1 -0.146820142822307 6.14201404936096 0.103180125465940 0.111273824772611
AT2G43770_at 7.40409114665893 7.7078594357954 7.75733778369002 7.67184262917678 8.04847237835434 7.97930329790919 7.79988094117321 8.03056946132334 6.65133593759634 6.36559467070962 5.95400626251833 6.18085573616292 6.78161306853666 6.4332014682617 6.28394815189626 6.79833868673104 6.48883459340292 6.19686572283433 7.07303417120349 0.215246503480508 0.215246503480508 0.227100164322436 0.219111635458655 0.216351663475355 0.228400022433139 0.215246503480508 0.219189386531852 0.231598324905473 0.221833063158343 0.224250654610251 0.217983373671086 0.220211992918987 0.215246503480508 0.225862045833599 0.218116925983517 0.226795573064677 0.215930701520844 0.228097492226254 2 2 - 18141385 18141909 18141594.545 18141138 18143078 - gene protein_coding_gene FALSE TRUE AT2G43770.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to WD40-like [Medicago truncatula] (GB:ABE81644.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.0891540945826357 -0.978535533935468 0.349064489530078 1 -0.146841402559530 14.3431010781582 -0.0891540945826357 0.0686977211156834
AT3G03400_at 1.34871841203195 0.984260904260315 1.26628694899827 1.56981731396703 1.15978795376423 1.29982625524620 1.89357785464632 1.36516147364805 1.22387428130759 1.28826943018437 1.89703100351211 1.48484194662839 1.46583157005718 1.84293663431253 1.80145631167526 1.28549798763746 1.25384383552007 1.74021848232188 1.40337238242772 0.183817275221410 0.185587434461433 0.187907799409724 0.18813272787878 0.192515358001917 0.183817275221410 0.190683789720376 0.185655467942677 0.188068765755235 0.186717972129287 0.189407809598317 0.191006334366081 0.185869579592754 0.188502266016042 0.187656162635725 0.19214986834278 0.197861540673864 0.196737835065746 0.184396500573236 3 3 - 808787 809069 808922 808752 809165 - gene protein_coding_gene FALSE TRUE AT3G03400.1 calmodulin-related protein, putative similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT5G17470.1); similar to calcium-binding protein [Olea europaea] (GB:AAF31152.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.108642573499412 0.978300961215585 0.34917533263005 1 -0.147053703901596 2.81174426595263 0.108642573499412 0.125245980710544
AT4G26230_at 9.37746108712386 9.50376299282512 9.3257343146121 9.21512246090536 9.37014448192823 9.1792055754274 9.61906459561212 9.56586822911015 8.92790366545154 9.35228516096793 9.40308098686831 9.71933289505809 8.97758932151509 9.11524222043254 9.87230617377425 8.96093205105585 9.06238901384884 8.940888433222 9.25907570836902 0.0975446521791268 0.0957038499526862 0.096249898139040 0.103055927051574 0.0976022271840267 0.101782487251593 0.0985593707728263 0.097224937931727 0.115047594234727 0.0974329825516482 0.096993886674426 0.0962063276212163 0.101931008603623 0.101405222040663 0.100037142986014 0.0963681322122742 0.102194340917901 0.102240492845350 0.0950717366424316 4 4|0 +|/ 13286061 13286527 13286395.667 13285834 13286800 + gene protein_coding_gene FALSE TRUE AT4G26230.1 60S ribosomal protein L31 (RPL31B) Identical to 60S ribosomal protein L31-2 (RPL31B) [Arabidopsis Thaliana] (GB:Q9STR1); similar to 60S ribosomal protein L31 (RPL31C) [Arabidopsis thaliana] (TAIR:AT5G56710.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) -0.0836361129535845 -0.9782883445202 0.349181295145015 1 -0.147065121520866 18.6126579581437 -0.0836361129535845 0.0449524847342594
AT4G37670_at 4.06257719270781 3.84483573017494 3.6101430282928 3.8232099938226 4.01179004980546 3.74762635349315 4.37489863842736 3.3988001981745 4.040242083191 4.03807875082338 3.74568168712404 4.29656633968113 3.29700995994038 3.54669308365151 4.09987470156798 3.88616348837854 3.83230120573614 3.93303714516514 3.85002194525243 0.231854772721892 0.229583493341696 0.229214124334382 0.237159942812585 0.227641309074968 0.239189180198754 0.230618982584321 0.239390549189594 0.234621920938242 0.228706697467289 0.229112049488546 0.236915562889278 0.225088444489356 0.23146800726541 0.244519377745302 0.225088444489356 0.227520590159178 0.225088444489356 0.228718961999777 4 4|0 -|/ 17696486 17697271 17696808.8 17696053 17698830 - gene protein_coding_gene FALSE TRUE AT4G37670.1|AT4G37670.2 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein [Arabidopsis thaliana] (TAIR:AT2G22910.1); similar to putative amino-acid N-acetyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAR87160.1); similar to Os03g0431200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050426.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Amino-acid N-acetyltransferase (ArgA); (InterPro:IPR010167); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182)|similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein [Arabidopsis thaliana] (TAIR:AT2G22910.1); similar to Os07g0585600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060125.1); similar to putative amino-acid N-acetyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAR87160.1); similar to Os03g0431200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050426.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Amino-acid N-acetyltransferase (ArgA); (InterPro:IPR010167); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.134266945933821 -0.978066643346629 0.349286080794982 1 -0.147265732632759 7.76212525369293 -0.134266945933821 0.182764037365037
AT1G76010_at 9.93086581204262 9.66584782328706 9.97576722254187 9.90733935864752 9.82467847167193 9.78790528762002 10.0243818687918 10.0415323654337 9.76975983016298 10.0165808127079 10.0828097579378 10.0202225219018 10.3128801869751 9.9831061760307 10.1578535058228 10.2708350999522 10.4186605171661 9.8899092883417 10.0095698205866 0.0700861817125062 0.0706759016288942 0.0705929160021712 0.0737887069691106 0.0718396946722741 0.072824816820754 0.0717087234837384 0.0724773472315422 0.0798581679812018 0.0705746712556714 0.0743277300264584 0.0695765909213272 0.0694439689040524 0.0726459188008493 0.0708361934970034 0.0706551208021362 0.072418155923278 0.0735566989650266 0.0717272089245248 1 1 - 28532440 28532741 28532616.455 28531738 28534451 - gene protein_coding_gene FALSE TRUE AT1G76010.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G20220.1); similar to Os09g0542000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063818.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71254.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775); contains InterPro domain Alba, DNA binding; (InterPro:IPR011574) 0.08416504750586 0.977805034988954 0.349409757656755 1 -0.147502406334462 19.9317921693805 0.08416504750586 0.0478843579164181
AT1G15660_at 5.31360540936933 5.84223134448229 5.03496347905928 4.6316297199549 5.29431521409429 5.45876467560844 5.71983417631118 5.31216425372252 4.57370150869266 5.35641111357654 5.24069602353327 5.69054600628028 5.31981842070292 5.51304483969669 5.54968682799139 5.52944912883489 4.89551705310473 4.80379363088176 5.38040750402589 0.247047725683713 0.245895208456927 0.244069167649282 0.249252668002807 0.247737435690478 0.256265506037503 0.244069167649282 0.249603280492015 0.254689770143535 0.244069167649282 0.245894210630205 0.246269534510428 0.247635246319057 0.250897227379822 0.258622702224906 0.249455749557627 0.255252101085234 0.244631689473396 0.244499931015023 1 1|0 +|/ 5384031 5384990 5384756.125 5381165 5385249 + gene protein_coding_gene FALSE TRUE AT1G15660.1 similar to CENP-C [Medicago truncatula] (GB:AAU04617.1); contains domain CENTROMERE PROTEIN C (PTHR16684); contains domain YrdC/RibB (SSF55821); contains domain gb def: CENP-C (Fragment) (PTHR16684:SF3) -0.113864120589445 -0.977784354964662 0.349419535612105 1 -0.147521113055460 10.5366013841469 -0.113864120589445 0.137941164941073
AT1G74010_at 2.49771883762128 2.66155118047985 2.8232016785302 2.70288910005074 2.0962094866512 1.7603831658514 2.25426529634344 1.97915640845729 1.89703553770644 1.89635444098996 1.84118741246864 2.04304798525453 1.82157277508685 1.7078103309124 2.04239849931950 2.49266381614183 2.19920084084032 2.31702400743953 1.81396455225648 0.208433122100371 0.211709033839598 0.224697513640365 0.212455200011472 0.21198817449609 0.216508023059355 0.226506261285578 0.220003873602252 0.209220466488681 0.213197428214005 0.210266023163181 0.215660038694857 0.225965537309686 0.214520350459791 0.208433122100371 0.211781813958339 0.214486406226736 0.222291681788743 0.211293688429266 1 1|0 -|/ 27836116 27837013 27836438.3 27835819 27837774 - gene protein_coding_gene FALSE TRUE AT1G74010.1 strictosidine synthase family protein similar to SS2 (STRICTOSIDINE SYNTHASE 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT1G74020.1); similar to strictosidine synthase (GB:AAB40593.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.0932464792470383 0.977715676984396 0.349452009445845 1 -0.147583235387510 4.3105375869568 0.0932464792470383 0.0829544658449756
AT3G23960_at 2.14827151803851 2.23214813261240 1.96507933558090 2.30257342970005 1.78542996112003 2.30229799446177 1.98351512339457 1.88689643765325 2.17897427956748 2.52716048330201 2.14654834125659 2.12234731421760 2.29331980645115 1.92919344670383 2.30363300837876 2.29879159052953 1.94423450313991 1.96989388310448 2.36387997021509 0.198198120857178 0.196631736071152 0.203528976071511 0.198954868619676 0.208000104046169 0.199092469651400 0.203463241899638 0.202480425943228 0.206389762875105 0.214277682042095 0.203504474094855 0.196454154949251 0.202734889832399 0.200990029009273 0.209948595903664 0.196810254082532 0.211626635436482 0.205241225351831 0.211053987076246 3 3 + 8658352 8658903 8658615.545 8657743 8658951 + gene protein_coding_gene FALSE TRUE AT3G23960.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G31470.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.102269481840561 -0.977709038833213 0.349455148358546 1 -0.147589239703796 4.31710989877898 -0.102269481840561 0.109096559511829
AT3G57960_at 2.12377323738156 1.96022569080159 1.80105607235437 1.67680399219744 1.71957953370063 2.08428662436697 1.31197674904263 1.74597475736252 2.10694561761849 1.40324860266764 1.88016126334654 1.53150384506827 1.89728860010001 1.68112969403837 1.90808845461828 1.57219911235756 2.18083222167389 2.27146071804321 1.58771031844948 0.189698001703503 0.191998677327105 0.198594622926861 0.196027016949675 0.189698001703503 0.194584320335852 0.193712211483322 0.197180331574097 0.197473494957074 0.190726978982672 0.194918038861022 0.189698001703503 0.194755543943208 0.201740212550202 0.193264668901303 0.200876686030766 0.192038326591742 0.199248496979933 0.196908922385804 3 3|0 +|/ 21474140 21475138 21474652.4 21474068 21475171 + gene protein_coding_gene FALSE TRUE AT3G57960.1 emsy N terminus domain-containing protein / ENT domain-containing protein similar to emsy N terminus domain-containing protein / ENT domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57970.1); contains InterPro domain ENT; (InterPro:IPR005491) 0.100487711375836 0.977477194382102 0.34956479103338 1 -0.147798925678314 3.58527683293478 0.100487711375836 0.104343770217768
AT1G16340_at 5.19627828274511 5.28309442488318 4.78655777161711 4.87060773888806 5.70255208857565 5.07031804242441 5.51834592607092 5.19587101436444 4.90343819346978 5.44953141768169 5.50140563150438 5.9896931629779 5.49331088973014 5.43401467246206 6.51258069576208 5.3572710378096 5.31651999877772 5.25246050373191 5.24642796191979 0.202510851789897 0.199630948892796 0.205393644935817 0.206110714366709 0.201188940766081 0.204890507830779 0.19832376475088 0.204442528430078 0.204135702563528 0.200904584710882 0.198439489783907 0.196312255318277 0.199672060983731 0.20455640665216 0.200802356285136 0.196312255318277 0.207067803271842 0.200600665892663 0.196727439758083 1 1|0 -|/ 5588130 5589422 5588696.714 5587806 5590645 - gene protein_coding_gene FALSE TRUE AT1G16340.1|AT1G16340.2|AT1G16340.3 ATKDSA2/ATKSDA; 3-deoxy-8-phosphooctulonate synthase|ATKDSA2/ATKSDA Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500). similar to AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1), 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] (TAIR:AT1G79500.4); similar to 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) (GB:O50044); contains InterPro domain 2-dehydro-3-deoxyphosphooctonate aldolase; (InterPro:IPR006269); contains InterPro domain DAHP synthetase I/KDSA; (InterPro:IPR006218) 0.108234690715557 0.977022132831887 0.349780068909463 1 -0.148210375401541 10.6064312937552 0.108234690715557 0.124588709498607
AT3G13190_at 3.75126250728318 3.66685048593550 3.54800514767526 3.39289814498576 3.17409902981961 3.74782610607552 3.23183007368091 3.43581620497127 3.05560036772286 3.39439227560756 3.62090286360319 4.06045163877491 3.72527595396837 3.16131034431381 3.81375927547647 3.67617669149045 3.32902230991036 3.58689869977991 3.63342895668399 0.162908610097543 0.173723283789099 0.168447045554117 0.161555645089946 0.168326978248821 0.163596410356469 0.160937359497613 0.167670008487388 0.167110319441336 0.165437934267805 0.162457957949635 0.162993821006861 0.165061520658535 0.165091447063637 0.162158099370526 0.160835993517539 0.163321156843658 0.169018743782162 0.163119245585044 3 3 + 4241221 4241787 4241513.364 4240179 4241968 + gene protein_coding_gene FALSE TRUE AT3G13190.1|AT3G13190.2|AT3G13190.3 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55860.1); similar to Prefoldin [Medicago truncatula] (GB:ABE89308.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.102425738998932 0.976978175513262 0.349800869072394 1 -0.148250111591412 6.98500609030478 0.102425738998932 0.109716748490262
AT2G46230_at 8.68864638052537 8.64004901950853 8.6994530620078 8.60837907622771 8.88195547608992 8.72383183637172 8.70445923484654 8.83254201393155 8.54051146307957 8.2780932415294 8.1213959592619 8.20636629280402 8.5000870967822 8.25156960936164 8.15635163267931 8.32633694112846 8.00138778940396 8.19165583777904 8.37076276548267 0.115353151136088 0.112769232072817 0.113313161121034 0.112151220165326 0.114462866967584 0.114288446304912 0.116739949134595 0.114681715088142 0.115446758783885 0.112646841474469 0.111588112258122 0.117453839772186 0.114374595905532 0.112158594250349 0.111446998492813 0.112537100922968 0.122528148739202 0.111485684165942 0.113631330458386 2 0|2 /|- 18991647 18992595 18992093.571 18991274 18993032 - gene protein_coding_gene FALSE TRUE AT2G46230.1|AT2G46230.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26530.1); similar to Nucleotide binding protein, PINc [Medicago truncatula] (GB:ABE90358.1); contains InterPro domain Nucleotide binding protein, PINc; (InterPro:IPR006596); contains InterPro domain Protein of unknown function DUF652; (InterPro:IPR006984) -0.0825406139962606 -0.976878420371165 0.349848075533138 1 -0.148340281978401 17.0303393715706 -0.0825406139962606 0.0394869858695153
AT1G64670_at 3.16701748550298 3.43499757459612 2.48338542092937 2.73661358287051 3.14160569800783 3.79609581679092 3.38650626613856 4.19077318878695 6.10857951338679 4.5106432815226 6.24534545607059 6.43791818080113 5.16422134864652 6.1023637947016 6.49697309946623 3.92672814622397 3.81102940699316 5.55673343506365 5.09438156654262 0.233873195455454 0.232809450269873 0.237636355191236 0.243437332368959 0.234305199814577 0.235948835482721 0.232809450269873 0.234172465174276 0.233682256756209 0.240385668548054 0.238828971147416 0.23988106208331 0.237333990309567 0.242633608359247 0.239343828057572 0.233636898282458 0.240879462415024 0.234216740450386 0.235946221950367 1 1|0 -|/ 24034658 24035570 24035035.3 24034483 24037219 - gene protein_coding_gene FALSE TRUE AT1G64670.1 BDG1 (BODYGUARD1); hydrolase Encodes a epidermally expressed extracellular protein that likely functions as an alpha-beta hydrolase and is required for normal cuticle formation. Homozygous mutant plants are dwarfed and have abnormal leaves, collapsed cells, reduced numbers of trichomes. The specific role of BDG is unclear: it may function in cutin biosynthesis or as a cross-linking enzyme in the cell wall itself. similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G41900.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO33147.1); similar to Os10g0532200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065147.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.137801255547317 -0.976854835043848 0.349859237335344 1 -0.148361600049231 8.64489049369283 -0.137801255547317 0.190449816559082
AT3G57430_at 3.84768787825122 4.7001917127693 3.40658168167680 3.31063588810355 3.64467373919961 3.84887118892128 2.83577794206571 2.8523697810252 2.4924880376239 2.53752612168773 2.58928501506253 2.78326274342081 2.90980345190927 2.64946223706388 2.63358857218276 2.91704073633401 2.98952410801453 2.42930878244031 2.44331891645756 0.239494014396670 0.244100650933461 0.231344864976465 0.232784031458977 0.235363422487989 0.237129070700130 0.231344864976465 0.239621380540598 0.231344864976465 0.235181787012294 0.237380243707072 0.231344864976465 0.233635534662056 0.236260601334198 0.237450813246104 0.233177990858728 0.237684722391635 0.235737740256582 0.234500390206158 3 3 - 21266719 21267279 21267013.636 21266612 21269457 - gene protein_coding_gene FALSE TRUE AT3G57430.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to Os04g0118700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052059.1); similar to H0613H07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66009.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.120116113247283 0.976504224185843 0.350025195052637 1 -0.148678456554514 6.17023396703154 0.120116113247283 0.152635809692627
AT1G78200_at 9.12947989952486 9.19267454103178 9.64888072859816 9.566113672602 9.7794351326533 9.10606617872869 9.60193647813034 9.3186015429378 8.55491796033186 8.96139537399447 8.97636343634762 8.84682702216768 8.98171638968538 9.01037532997783 8.31497788786385 8.97750490080411 8.8701494619145 8.70515793542322 8.97659144267213 0.165094689253011 0.166435752033334 0.169808653653853 0.171215270427552 0.170605521914652 0.184006285691666 0.167915612503132 0.170681962104307 0.181208975740449 0.170393173627178 0.175128901895428 0.165094689253011 0.168360704675453 0.173627944684090 0.193790293136586 0.165274262737136 0.198638916214123 0.184321715798923 0.171486661705013 1 1 + 29425809 29426513 29426135.727 29425146 29426757 + gene protein_coding_gene FALSE TRUE AT1G78200.1|AT1G78200.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G22280.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.109433299631442 0.976417920695934 0.350066054591706 1 -0.148756436936376 18.2510746740371 0.109433299631442 0.127703130586594
AT1G26240_at 1.83153666973133 2.11844671404842 1.70959988055631 2.13094707091395 1.56046229789831 2.28089721110144 1.57008393801552 2.63160816667664 1.74858067413602 2.70164672369849 2.18581976565409 1.63055202204044 2.32700112764861 2.02481477396678 2.38926770938941 1.66504813406123 2.35960158748125 1.99467625548035 2.38578514650129 0.213840594439687 0.235522591128601 0.217860928154721 0.231709999259599 0.213621217462141 0.226525057566158 0.209059458481434 0.217428386532042 0.225524868497416 0.215349129202802 0.209059458481434 0.213487458330688 0.219072143085646 0.212301280320829 0.211259808097424 0.214440949333507 0.21481421081552 0.216979050757779 0.226820409727152 1 1 - 9078142 9078461 9078252.909 9078127 9079563 - gene protein_coding_gene FALSE TRUE AT1G26240.1 proline-rich extensin-like family protein similar to proline-rich extensin, putative [Arabidopsis thaliana] (TAIR:AT1G26250.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.162007716573567 -0.976121889506904 0.35020623391385 1 -0.149023875608579 4.15458200365634 -0.162007716573567 0.238897621662984
AT3G20310_at 6.84366939103408 7.94939004686598 7.36127208323156 7.22471469110468 8.39782311661009 7.59978384808067 7.49812906544921 8.02381536571578 6.87732669904537 6.90401209922812 7.43803509568572 7.33157373345207 7.42341457828363 7.26460819874474 6.83655056384771 7.21318461367424 6.30638461063488 6.74791454616481 6.61232878506928 0.2403784371876 0.239643496825157 0.245346001768024 0.240555206725197 0.242623673895429 0.250822963001644 0.240266947575191 0.241543997027216 0.248333852899948 0.239643496825157 0.244725061217596 0.245544508592513 0.239643496825157 0.249196312963963 0.248304853487422 0.243269770402338 0.248470940116825 0.244564605505749 0.239643496825157 3 3 - 7085976 7086435 7086207.818 7084812 7086811 - gene protein_coding_gene FALSE TRUE AT3G20310.1 ERF7 (ETHYLINE RESPONSE FACTOR7); DNA binding / protein binding / transcription factor/ transcriptional repressor Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box?mediated transcription together with AtSin3 and HDA19. Identical to Ethylene-responsive transcription factor 7 (Ethylene-responsive element-binding factor 7) (EREBP-7) (AtERF7) (ERF7) [Arabidopsis Thaliana] (GB:Q9LDE4); similar to ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT1G50640.1); similar to AT-rich element binding factor 2 [Pisum sativum] (GB:AAV85852.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.169733257801938 0.975333253285684 0.350579874468238 1 -0.149736013380088 14.5463734195158 0.169733257801938 0.254012112062186
AT4G23440_at 2.29042247492150 2.74113608026374 1.62092122631389 1.72573415482915 1.84660192266365 2.7786213397332 1.83008880679327 2.14529894131122 2.91321058050191 2.75946350770914 3.35198932518746 3.15771838271089 2.90462560056521 2.94220857937951 2.84105566011146 2.62006758652046 2.53294899374793 2.64610513530771 2.99351063225433 0.180763518708283 0.182659909473537 0.190228270317488 0.185678928469779 0.180527465897691 0.182148993789138 0.183204742913927 0.182261066376684 0.190027479383629 0.191513387621360 0.193302175453463 0.190985939313204 0.179817134530427 0.186992548722993 0.188407448226531 0.182501080454101 0.184205939617670 0.182760930090422 0.181926373953603 4 4 + 12240094 12240622 12240342 12237775 12240836 + gene protein_coding_gene FALSE TRUE AT4G23440.1 transmembrane receptor similar to nucleoside-triphosphatase/ nucleotide binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G56220.1); similar to putative ATPase [Triticum aestivum] (GB:CAJ19360.1); similar to Os08g0499100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062146.1); similar to Os01g0760400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044316.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -0.136452623575628 -0.97514712404128 0.350668101003510 1 -0.149904018518487 5.00401219240193 -0.136452623575628 0.188156354372884
AT3G45440_at 1.04612292444738 0.67115029754335 0.961047522301753 1.17673088909755 1.21246428260518 1.39647430513027 1.34783527946329 1.00922041663939 1.36545243479664 1.20862101207556 1.65925051297977 0.955036652679668 1.02369848685846 1.41927502692823 1.10247421665102 0.993620069797755 1.16551145562192 1.19813116503444 0.906501399520668 0.194114793552723 0.189494145994437 0.193051403119236 0.184326623608616 0.182840790569329 0.185915631191631 0.188311951685277 0.186920171557397 0.188038732074760 0.184818067758071 0.186063292759205 0.183689908011002 0.185157100358086 0.185549552095513 0.185570827717054 0.185588578233361 0.183280554810947 0.184284985501711 0.193154431298504 3 3 - 16675871 16676358 16676105.909 16675860 16677869 - gene protein_coding_gene FALSE TRUE AT3G45440.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G60320.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G60280.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G45330.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.0987650515574788 0.974997416881636 0.350739074890380 1 -0.15003912889329 2.27753889654512 0.0987650515574788 0.100258782898957
AT1G75240_at 4.07462933247028 4.1373424226453 4.00843343161078 3.80614180387477 3.74351522720091 3.82133528116126 3.77952923575965 3.89234290388977 4.08412549772549 3.77681987218216 4.232269173157 3.98026765837642 4.17111777232257 3.79984493554288 4.02331450245959 3.99250627606557 4.19769071879006 3.81504677762477 4.33879284223074 0.150913442228815 0.153278379917063 0.150755966642029 0.148852409874504 0.156857208539691 0.1483079684167 0.153953971028508 0.150015072281999 0.154611363651895 0.157196544423072 0.151465051691771 0.15033929836052 0.150485807015807 0.151122804734349 0.153676817787967 0.152950241215457 0.155618325987203 0.154939841903403 0.155918222901205 1 1 + 28245569 28246060 28245769.727 28244733 28246417 + gene protein_coding_gene FALSE TRUE AT1G75240.1 ATHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33); DNA binding / transcription factor similar to ATHB24 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 24), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G18350.1); similar to Os11g0243300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067594.1); similar to zinc finger homeodomain protein 1 [Physcomitrella patens] (GB:AAZ07989.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.0830883574915466 -0.974701965191815 0.350879174568063 1 -0.150305723055945 7.95445202024583 -0.0830883574915466 0.0436556651636324
AT2G18160_at 8.97419506881404 9.04263032764397 9.43225754977682 9.4392693211004 9.67641493822484 9.51783202361626 9.98953855301607 10.0084907893506 8.8673060154063 9.69968114695807 9.59239234028631 9.5563846620576 9.84749752065092 9.70591832100363 9.20738154745539 10.1090392504126 9.33165425789873 9.44610429280706 9.78415314208405 0.0782224847331917 0.0732280668225365 0.0794375149112413 0.0733504061193824 0.0706156051729163 0.0759128176963625 0.0723985295533228 0.0766759852630108 0.0917249013203272 0.0746793343772133 0.07580598042475 0.0702867018325734 0.078163429303591 0.0711940608990343 0.0729177167391114 0.0712505490011523 0.0823444681754966 0.0724116714081052 0.0716035494210477 2 2 - 7905502 7905856 7905660.273 7905094 7906324 - gene protein_coding_gene FALSE TRUE AT2G18160.1 GBF5 (G-box binding factor 5); DNA binding / transcription factor Encodes a b-ZIP transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE85416.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.080948098031061 0.974570219988906 0.350941659639587 1 -0.150424578829273 19.0350418842200 0.080948098031061 0.0300937421272288
AT2G28605_at 5.35696836079806 5.88626842389134 5.5576678391633 5.36085053242719 6.46809602134276 5.66706060293706 6.95113585386072 6.7243879813582 6.79781175668757 6.56829871875805 6.94807988781014 7.30961612209587 7.01608852228314 7.17916507640119 7.2130303397379 7.15347709111747 5.79266426175433 6.69115216085561 6.75164411952686 0.200430094971211 0.187285223216769 0.202102931737930 0.194391929387148 0.195404690442393 0.207751999542206 0.193883131297701 0.205023564446249 0.194010221391777 0.194248797088559 0.194079933119291 0.196982717963231 0.193062813359959 0.191596554894412 0.200790064179948 0.190131275629940 0.210725390485113 0.194609034008112 0.192346221512608 2 2 + 12262207 12262723 12262407.909 12261965 12262914 + gene protein_coding_gene FALSE TRUE AT2G28605.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79267.1) -0.129640210788355 -0.97424356512086 0.351096622638403 1 -0.150719217770001 12.8059681425129 -0.129640210788355 0.174087138477875
AT1G11600_at 2.71748696158777 2.57297254542478 2.70439667551390 2.89526261003557 2.53564511817036 2.91885633544951 2.96053946627805 2.65306547855062 3.60831019844549 3.05376662116380 3.30721803248179 3.44048153993479 3.6718304667527 3.1378158862476 3.48667205841991 3.2313754462486 3.4987114546902 3.25954543984277 3.00813582577943 0.185205068768386 0.190413929554195 0.188912452157673 0.184786286687192 0.186438185835841 0.190128635496635 0.184285936923990 0.193041999998574 0.189729990902344 0.201533762147334 0.186253816908296 0.186891212378809 0.185956676573225 0.185787748881061 0.183212058619089 0.186751103971241 0.191140932857400 0.187323011117598 0.181665211407683 1 1 + 3903029 3903457 3903303.182 3902012 3903778 + gene protein_coding_gene FALSE TRUE AT1G11600.1 CYP77B1 (cytochrome P450, family 77, subfamily B, polypeptide 1); oxygen binding member of CYP77B similar to CYP77A4 (cytochrome P450, family 77, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G04660.1); similar to Os06g0680700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058373.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE77793.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0966630736398773 0.973736775846054 0.351337138300707 1 -0.151176174196866 6.04608340172975 0.0966630736398773 0.0945811914717024
AT3G49510_at 1.28550179483104 1.04688961746486 1.40671059382334 1.56775826735282 1.17804318773740 0.94239809755686 1.31866354529891 0.99381236990904 1.64500182582307 1.83516295270317 1.45433773912828 1.01262374638504 1.37701928984108 1.23042334086158 1.45885994591831 1.45763083032074 1.35837405658926 1.97871358961481 1.66708608675975 0.186262530409589 0.18611017748762 0.187259676337788 0.188237716470824 0.188405142758205 0.18611017748762 0.18611017748762 0.194148765658424 0.186960255829172 0.195100704137236 0.197092866421759 0.18611017748762 0.186360217135009 0.189408536139461 0.191979474182477 0.188862237002323 0.190982495766802 0.189939474794180 0.194587147977016 3 3 + 18366910 18367435 18367191.273 18364827 18367493 + gene protein_coding_gene FALSE TRUE AT3G49510.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G49520.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE85493.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABD33326.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0936208831773174 -0.97334259104424 0.351524295771705 1 -0.151531462628059 2.78334623712731 -0.0936208831773174 0.0854702634490201
AT1G35470_at 7.33651045834122 7.6127205681881 7.56324318098178 7.77562936245707 7.84674399872264 7.6268349318552 7.51434686871398 7.86869119113005 6.92562230703798 7.05154060116506 6.96887170806862 7.31018202372417 7.06065938815062 6.67171734971952 7.26487740586744 7.26853243352762 6.84414759634564 7.14362751414829 7.0041242159209 0.225217455383140 0.212294299937549 0.22812670769159 0.213871788781043 0.216288792188347 0.223210032837161 0.223772251317245 0.227572995953904 0.242577307313864 0.219608096719029 0.214510551293666 0.212169618000719 0.217709512609905 0.224121194723482 0.220193389086573 0.213525221040036 0.238647874143177 0.223957136552525 0.213805455103516 1 1|0 -|/ 13051625 13052921 13052043.9 13051388 13054992 - gene protein_coding_gene FALSE TRUE AT1G35470.1|AT1G35470.2 SPla/RYanodine receptor (SPRY) domain-containing protein similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09340.1); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877)|similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09340.1); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877) 0.096430074823424 0.973231851830898 0.35157688731647 1 -0.151631253184938 14.6732597211247 0.096430074823424 0.0940436765619707
AT3G21000_at 2.28899265616263 1.84086826570359 2.11673665902314 1.81486404232779 1.4837312248631 2.01937785054334 2.05757897570714 1.90852881303543 1.8133765436329 2.11906663137685 2.12731087054325 1.67044198420287 2.38155083899231 1.78371797741812 1.62861952490249 1.80197584123624 1.9037643798735 2.17444516968537 2.04397825315964 0.180866445144445 0.177333315795974 0.187644723274943 0.185949668064516 0.177333315795974 0.177333315795974 0.179678179315169 0.192201116784963 0.192906981072791 0.180800880584663 0.184956049757889 0.182582549609477 0.181237222374154 0.185546662225929 0.182588112065866 0.180499477400808 0.1807807454342 0.196462729469118 0.189000724457128 3 3 + 7364554 7365093 7364841.182 7363927 7365144 + gene protein_coding_gene FALSE TRUE AT3G21000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20980.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAP46257.1); contains domain GAG-POL-RELATED RETROTRANSPOSON (PTHR11439); contains domain "Winged helix" DNA-binding domain (SSF46785) -0.111738443081276 -0.973169961729677 0.35160628223983 1 -0.151687020192375 3.90439421062739 -0.111738443081276 0.134167686524755
AT3G16050_at 3.80845363635762 3.6121269475618 3.74035349419154 3.74575305320206 3.17167151532688 3.35483623103527 3.42286404902566 3.39746637116793 3.82762726900399 3.44685853909922 3.54402337773142 3.49113443305682 3.2935647698147 3.61997503046463 3.97735353901713 3.42768864343706 3.80404484518473 3.72043540326288 3.88474886286109 0.195278120404694 0.192997427405740 0.187261388270281 0.185485082024957 0.182555823330233 0.181844025295447 0.182048738385695 0.181844025295447 0.195678309926126 0.185034664532945 0.184304311864456 0.185236588178169 0.182383335933875 0.185100878450104 0.181844025295447 0.181844025295447 0.181844025295447 0.186631681361929 0.188931854557392 3 3 - 5444212 5444639 5444408.273 5443956 5445335 - gene protein_coding_gene FALSE TRUE AT3G16050.1 A37 (PYRIDOXINE BIOSYNTHESIS 1.2); protein heterodimerization Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation. Identical to Probable pyridoxal biosynthesis protein PDX1.2 (AtPDX1.2) (AtPDX1;3) (PDX12) [Arabidopsis Thaliana] (GB:Q9ZNR6;GB:Q0WS48); similar to PDX1 (PYRIDOXINE BIOSYNTHESIS 1.3), protein heterodimerization/ protein homodimerization [Arabidopsis thaliana] (TAIR:AT5G01410.1); similar to pyridoxine biosynthesis protein [Lotus corniculatus var. japonicus] (GB:AAZ67141.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Vitamin B6 biosynthesis protein; (InterPro:IPR001852) -0.083520781332287 -0.973068063622844 0.351654682981997 1 -0.151778830623245 7.1964518600174 -0.083520781332287 0.0466823348760322
AT3G15950_at 0.501111000442089 0.448957207817422 0.269301843137872 0.67117289063009 0.567149467098265 0.711795880891247 0.482128385267664 0.595567432321448 0.73860336688586 0.172787778409187 0.305076766995035 0.372529975449639 0.886201483838661 0.975107377008106 0.355214292435655 0.762395902949577 0.575832559641208 0.446091566437431 0.441113974205755 0.220292449864555 0.221879503849208 0.219268071790124 0.226284485812596 0.219341595961542 0.219419309910088 0.219268071790124 0.226091994768192 0.234527831981929 0.229674662922091 0.225257332311878 0.222103435301475 0.223981807762425 0.219268071790124 0.223826608906584 0.219268071790124 0.226578317080989 0.219268071790124 0.229118169547022 3 3 - 5397912 5398299 5398113.727 5397575 5402658 - gene protein_coding_gene FALSE TRUE AT3G15950.1|AT3G15950.2 (TSA1-LIKE); unknown protein Similar to TSK-associating protein 1 (TSA1), contains 10 EFE repeats, a novel repeat sequence unique to plants. Expressed preferentially in the roots. similar to TSA1 (TSK-ASSOCIATING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52410.2); similar to Myosin class II heavy chain (ISS) [Ostreococcus tauri] (GB:CAL51591.1); contains domain no description (G3D.1.20.5.110)|similar to TSA1 (TSK-ASSOCIATING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52410.2); similar to hypothetical protein UM00766.1 [Ustilago maydis 521] (GB:XP_756913.1); contains domain no description (G3D.1.20.5.110) 0.0909426073690132 0.972438194479463 0.351953972521800 1 -0.152346167621012 1.04871865366477 0.0909426073690132 0.0770066730088178
AT1G21340_at 1.66376665565127 2.09226096273886 1.58649727524751 1.71401774983638 1.66668622385914 1.72455842765316 1.39777585129531 1.76369036296577 2.19630268001365 1.95176930532484 2.02178637852491 1.99353468781482 1.78927516292721 2.03002208298995 1.90707962580006 2.08703219891445 2.18005801581773 2.20395031851346 2.35388470887446 0.223438106541723 0.222208393334943 0.222532741836858 0.224794548338865 0.227318026367889 0.223878878130947 0.229958151032039 0.222208393334943 0.226637070928051 0.226746767498231 0.223900832973762 0.238984563643601 0.227215006323474 0.222364023716520 0.23964852743133 0.224875717485397 0.233252575578605 0.232097355290595 0.224887575453891 1 1 + 7476265 7476770 7476480 7476075 7476857 + gene protein_coding_gene FALSE TRUE AT1G21340.1 Dof-type zinc finger domain-containing protein Identical to Hypothetical Dof zinc finger protein DOF1.2 (AtDOF1.2) (DOF1.2) [Arabidopsis Thaliana] (GB:P68349); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52440.1); similar to Os01g0865800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044901.1); similar to Dof16 [Glycine max] (GB:ABI16017.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.0985800640859567 -0.97240579392883 0.351969372996325 1 -0.152375343288896 3.79811229214783 -0.0985800640859567 0.100477788815694
AT1G74550_at 1.59448338264413 0.944322529760244 1.41101647571544 1.43188528230230 1.19319056744024 1.12961459261595 1.38537920758359 1.21577675878210 1.32566165542896 1.48488921351168 1.05356844518235 1.14400580773040 1.08130582434049 1.33529229002826 1.1820308952359 1.23889802135018 1.29696204475634 1.39366368907444 1.48371521129863 0.207163192583539 0.206221472129671 0.210657056969255 0.214429077042401 0.2080131460313 0.212866645804716 0.213290336830571 0.209835655925042 0.219871165831957 0.205866717439898 0.207452390018922 0.216929035290568 0.209560819855509 0.220111740191185 0.207257933574173 0.208581993738660 0.212170659877005 0.214931683134457 0.207266746711092 1 1 + 28020651 28021176 28020915 28019706 28021372 + gene protein_coding_gene FALSE TRUE AT1G74550.1 CYP98A9 (cytochrome P450, family 98, subfamily A, polypeptide 9); oxygen binding member of CYP98A similar to CYP98A8 (cytochrome P450, family 98, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G74540.1); similar to cytochrome P450 monooxygenase CYP98A37 [Medicago truncatula] (GB:ABC59086.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.104634944854081 -0.972109541521373 0.352110208876524 1 -0.152642071873250 2.61177755158486 -0.104634944854081 0.116853748899553
AT1G49930_at 3.03957597294389 3.64521280973142 3.86117780488848 3.61407840693327 3.19625676333678 3.47260729092343 3.34565794395699 3.45878497464475 3.95755441400258 3.85792685479489 3.69317274967198 3.79736543329583 3.82420164208473 3.95367541178983 3.70190794547717 4.17575420097067 4.19353983998165 4.12650171274403 3.829874999252 0.242030221929340 0.238433320590807 0.247169717361503 0.233600115187034 0.236004448090782 0.236789027633203 0.236962939083092 0.236750118102244 0.246614026299885 0.229620436978238 0.232903796577230 0.243808520592830 0.236979465833783 0.242543864710516 0.243848683192767 0.244071313824574 0.245545990230290 0.234687264591686 0.235362305865291 1 1|0 +|/ 18488659 18489268 18488958.333 18488600 18489307 + gene protein_coding_gene FALSE TRUE AT1G49930.1 similar to aminoacyl-tRNA synthetase family protein [Arabidopsis thaliana] (TAIR:AT5G22800.1) 0.107600792760029 0.971862489775842 0.352227686343012 1 -0.152864451579057 7.36169414076245 0.107600792760029 0.124433575420545
AT1G19500_at 2.05301911885069 1.74896206623340 2.00834666482671 2.25750014222279 1.39734234353404 1.84041335875646 1.47028315111604 1.95940977400214 2.06064439580138 1.67483739552038 1.21110066060811 1.97320910652573 1.63805141445820 2.34290499935275 2.38851936571689 2.15314762405311 2.39382728216575 1.58633331391175 1.68471553312376 0.214130485059907 0.213533041615643 0.209083387295160 0.213007365176711 0.209083387295160 0.21003054736255 0.212946135933320 0.209083387295160 0.219247852260184 0.215619905864588 0.219382493867865 0.209343124330425 0.219540142282171 0.211892864880554 0.214698541394943 0.220138506397570 0.209083387295160 0.214998089315143 0.216430178299323 1 1|0 -|/ 6755309 6755483 6755404 6754778 6755564 - gene protein_coding_gene FALSE TRUE AT1G19500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35765.1) 0.111068189575815 0.971802462156613 0.352256234815511 1 -0.152918477422215 3.72571915860822 0.111068189575815 0.132935375799390
AT2G32910_at 8.26797376294722 8.40528181053062 8.08493907501502 8.41227706080922 8.39244041552137 8.36809353423636 8.25209320345359 8.32841981415153 8.0558511124834 7.93301128785184 7.53047946194488 7.69585433698434 7.74399245622501 7.79186053338014 7.71352860550581 8.14352021451794 7.97885151704634 7.90477722148896 7.9749242858949 0.169300332512488 0.162363937066724 0.168740511679946 0.160994521366279 0.172903208162757 0.170186608476526 0.164363678541106 0.166255171044681 0.163040652690111 0.164442446833491 0.166768785729232 0.16566125987801 0.164330414522441 0.165846288412544 0.168373512387994 0.158619135100580 0.169391810556579 0.164665365989768 0.158748741896648 2 2 + 13968614 13969016 13968821.636 13966127 13969195 + gene protein_coding_gene FALSE TRUE AT2G32910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61910.3); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94008.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG22502.1); similar to Os06g0227200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057206.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.087037739199306 -0.971658319207877 0.352324794442484 1 -0.153048197162538 16.2143333039815 -0.087037739199306 0.0629743470123158
AT2G21420_at 1.51734324993357 1.79866143010539 2.09662583593292 1.52650570188134 1.09971023069345 1.80374136862112 1.91839026072493 1.46555275907041 1.70509358920296 2.26619690223402 1.37132653871743 1.77307272487227 1.58121105847106 1.70473284621867 1.24718621342071 1.61038838504010 2.01170816362382 2.23779891124544 1.77304369119612 0.200223250984136 0.201182818169889 0.197763957155980 0.200255209642226 0.202863376704244 0.200830923003651 0.197763957155980 0.197763957155980 0.206961052913930 0.204523334087906 0.197763957155980 0.198339617129997 0.200063222848572 0.203127030757133 0.207993226309248 0.198057405567775 0.206486234291933 0.203214577683305 0.201171554083876 2 2 + 9178144 9178778 9178409.909 9176793 9178826 + gene protein_coding_gene FALSE TRUE AT2G21420.1 zinc finger protein-related similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G37560.1); similar to zinc finger family protein, putative [Solanum demissum] (GB:AAT40530.2); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867) -0.132970548176440 -0.971596380245387 0.352354257828669 1 -0.15310393350552 3.45679443765984 -0.132970548176440 0.181904945386721
AT4G19130_at 2.14024674672435 1.80075390456689 2.5803828765837 2.20681199101623 1.81475273191408 2.33146703349875 2.26087602786592 2.17580220461401 2.07920140883922 1.95224260571660 1.98215442295639 2.11982941657654 2.15936115074530 2.14978661287471 2.05395899581016 2.0642302177068 2.22107081313271 2.1202704087391 2.06320807649580 0.21014842294789 0.218644112392373 0.211577755556871 0.218096119386480 0.214595180325963 0.211889945288623 0.212137292220256 0.212587711630063 0.21260180066181 0.210355761299394 0.208740710567177 0.208740710567177 0.216321652695800 0.214176577870693 0.210887370871965 0.208740710567177 0.218077859658649 0.216293685956725 0.214497020055226 4 4 - 10466640 10466934 10466775.818 10466488 10468071 - gene protein_coding_gene FALSE TRUE AT4G19130.1 replication protein-related similar to replication protein, putative [Arabidopsis thaliana] (TAIR:AT5G45400.1); similar to RPA 70kDa subunit [Pisum sativum] (GB:AAQ23194.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Replication factor-a protein 1 Rpa1; (InterPro:IPR004591); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.108107997555454 0.97121522897644 0.352535604680743 1 -0.153446851221267 4.23407841551545 0.108107997555454 0.125871761634666
AT3G51480_at 3.36439144147106 3.30554114135691 3.54501676867628 3.50252504735715 2.67389513742833 3.37539174847622 4.07134134649565 4.31246607545348 3.02717972824829 3.42244637339168 3.95500452912628 4.0730810096826 3.89040324161607 3.89895457895338 4.41910137909614 3.84297394881624 4.21723446333437 3.67799084398907 3.41702385117447 0.269431750154042 0.257243475816842 0.261871603583726 0.269002507192744 0.257536641260459 0.276507229910245 0.265107973290157 0.261327596301414 0.257578480852058 0.258555933064657 0.263465176813876 0.264337692443746 0.269744755161307 0.268799719315889 0.259531276140405 0.258587141446718 0.257243475816842 0.273387647133808 0.264732439668465 3 3 + 19114922 19115636 19115256.636 19111655 19115804 + gene protein_coding_gene FALSE TRUE AT3G51480.1 ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.6 precursor (Ligand-gated ion channel 3.6) (GLR3.6) [Arabidopsis Thaliana] (GB:Q84W41;GB:Q9SD01); similar to GLR2 (GLUTAMATE RECEPTOR 2) [Arabidopsis thaliana] (TAIR:AT2G17260.1); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to GLUR2 (Glutamate receptor 2) [Arabidopsis thaliana] (TAIR:AT4G35290.1); similar to H0307D04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66856.1); similar to Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) (GB:Q7XP59); similar to Ionotropic glutamate receptor; Extracellular ligand-binding receptor [Medicago truncatula] (GB:ABE83251.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Metabotropic gamma-aminobutyric acid receptor, type B; (InterPro:IPR002455); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) 0.109365928006086 0.971163877750178 0.352560042088056 1 -0.153493042854303 7.16168424680518 0.109365928006086 0.128981755875940
AT1G70630_at 2.59934672300535 2.19795715981306 2.05707811833005 1.98295029270913 2.34256766435828 2.03444310774726 2.4855570074181 1.95452045206497 2.14636990998509 1.85162532146292 2.69424817050154 2.5507215076005 2.20729639725511 2.83814909339562 2.38446675171091 2.21523170630939 2.28671426891953 2.00640255227928 1.92769896343597 0.199252379473063 0.194445729684725 0.202647100904500 0.195611648332870 0.201012405798209 0.204734511859401 0.199941545220094 0.199845586932989 0.197734054819396 0.196575982721603 0.197604645640768 0.193914714457102 0.191730515430494 0.198283227250213 0.199269608913998 0.194725008149822 0.203802121592476 0.193995104295455 0.198525530080785 1 1 + 26637048 26637466 26637257.364 26634895 26637765 + gene protein_coding_gene FALSE TRUE AT1G70630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35610.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU03099.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.108793433956318 0.971134092052613 0.352574217290729 1 -0.153519834861534 4.39337016782635 0.108793433956318 0.127585902812096
AT4G22212_at 2.45590630127146 2.50156176092341 2.36090344629713 2.44265690145771 2.03694620332593 2.32440058296220 2.31898487286570 2.14332062970976 2.27423613888464 2.60846771731178 2.0059050319196 2.40423203020599 2.66420712912820 2.21138845842268 2.43138174908266 2.55538239520141 2.72587051533557 2.62342438109945 2.80251259114148 0.19902470683126 0.194859258592985 0.193358135001909 0.197097019843292 0.194487321252553 0.203051486992784 0.201549203476693 0.197144908160765 0.198377986931287 0.198727534245430 0.193358135001909 0.199771899437651 0.198938660298353 0.194118585594946 0.194877445746877 0.196000636408352 0.201942201281671 0.206969721756926 0.200325517918981 4 4 + 11754044 11754378 11754253.545 11753998 11754700 + gene protein_coding_gene FALSE TRUE AT4G22212.1 Encodes a defensin-like (DEFL) family protein. similar to LCR85 (Low-molecular-weight cysteine-rich 85) [Arabidopsis thaliana] (TAIR:AT4G22210.1); contains domain Scorpion toxin-like (SSF57095) -0.086365731080849 -0.970951622419826 0.352661064741217 1 -0.153683950049434 4.83031647589103 -0.086365731080849 0.0605087791475281
AT1G61120_at 1.18556259405093 1.783646869187 2.5528103033903 2.77985596428821 1.47706235776209 1.01752807312251 1.56519199419245 1.62283062753952 2.05288077740134 2.25595351246768 1.55801343917974 1.25001133795233 1.69021860141595 1.58313333847106 1.42604237913673 1.66677052678527 1.36840945439118 1.69072446270646 2.20632210396607 0.205527609698585 0.208181714179856 0.212957460181631 0.214932497663416 0.205963527179065 0.206506744588395 0.212670124018717 0.206268186078916 0.213453688570536 0.207141169760062 0.205527609698585 0.218955733784158 0.209699788702702 0.205527609698585 0.212142671772091 0.205527609698585 0.212232775549855 0.206731440190143 0.209416204859241 1 1 + 22531702 22532236 22532052.455 22527302 22532476 + gene protein_coding_gene FALSE TRUE AT1G61120.1 terpene synthase/cyclase family protein similar to GA2 (GA REQUIRING 2), ent-kaurene synthase [Arabidopsis thaliana] (TAIR:AT1G79460.1); similar to linalool synthase [Clarkia concinna] (GB:AAD19839.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.112523601020946 -0.970860445015027 0.35270446693467 1 -0.153765946438568 3.59850321816656 -0.112523601020946 0.136674680142754
AT2G42560_at 3.18105791032482 2.75489984309705 3.38697263189596 2.49013552151739 2.70787813133804 2.90383254093902 2.80196450512479 2.55516074344454 3.11048906256913 3.07934193371427 2.42882158599839 2.65507692493370 2.59324795965169 2.79050414075884 2.63972226248972 2.87508799271485 3.19509785265046 2.89561044642482 3.02685518212220 0.175940174437861 0.164166776904409 0.164742604542034 0.173204385585439 0.168787226362961 0.173576514652628 0.165190576797668 0.166909180756141 0.164505964703421 0.169125083700329 0.172026704297382 0.177145951627642 0.168297446081584 0.166913797391505 0.167911725927605 0.164959215352071 0.1735197624402 0.169356019357829 0.17671732952903 2 2 - 17721920 17722563 17722239.545 17721716 17723990 - gene protein_coding_gene FALSE TRUE AT2G42560.1 late embryogenesis abundant domain-containing protein / LEA domain-containing protein similar to ATECP63 (EMBRYONIC CELL PROTEIN 63) [Arabidopsis thaliana] (TAIR:AT2G36640.1); similar to LEA protein [Glycine max] (GB:AAC61783.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -0.132074312253792 -0.970672654192375 0.352793871132869 1 -0.153934807764275 5.7634251643792 -0.132074312253792 0.180279252962638
AT3G60310_at 2.89169548033285 3.0306430140523 2.84780323940253 2.93745331157269 3.34635577021169 3.1508896413994 3.54751036641659 2.96469711013960 3.46905884465015 3.20295234053491 3.00883529472591 3.06193630638222 3.56783044897071 3.0576298756884 3.07098105915105 3.06378790615184 2.8506323262134 2.89648726669388 3.04170402036692 0.238987948574381 0.241042043683801 0.243087289026340 0.242019446247131 0.240636736914117 0.239346354128219 0.238452644031813 0.242097027477176 0.252260298818239 0.239711983618492 0.244911142971241 0.234498927073616 0.242872494708528 0.235807570079219 0.242335324418633 0.234498927073616 0.244368190202928 0.242714582159355 0.244116838965229 3 3 + 22300767 22301323 22301003.636 22298660 22301354 + gene protein_coding_gene FALSE TRUE AT3G60310.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68628.1) -0.101825505054451 -0.969668554936519 0.353272184594678 1 -0.154837233739339 6.24471605619821 -0.101825505054451 0.110161473521267
AT1G60980_at 1.90108390372280 1.45860393253077 1.66725860389910 1.87411017751626 1.16920344024999 1.43621437722642 1.20106493304630 1.73500899271368 1.58218801607418 1.94748246616989 1.66443519651675 1.52481552642474 1.92866555507048 1.56558332225124 1.56220170617466 1.40365297503856 1.37082580583065 1.75354628179816 1.81494400218632 0.201462525043409 0.198747757518288 0.197635476846299 0.199751760497016 0.198629992339679 0.202544828809287 0.198153207874312 0.197206800988500 0.202088835579792 0.210973941267657 0.20282554142766 0.199678894779535 0.203512773080013 0.196106153693095 0.196106153693095 0.198774516378232 0.20277186050759 0.206064495773944 0.202361461224588 1 1|0 +|/ 22456917 22457687 22457194.5 22456238 22457805 + gene protein_coding_gene FALSE TRUE AT1G60980.1 ATGA20OX4 (GIBBERELLIN 20-OXIDASE 4); gibberellin 20-oxidase similar to YAP169 (Gibberellin 20 oxidase 3), gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT5G07200.1); similar to (GB:AAR83346.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.111033078059542 -0.969502630984089 0.353351269334900 1 -0.154986282038852 3.24444552392064 -0.111033078059542 0.133484186543244
AT2G26770_at 7.4977813034562 7.36196120898825 7.45532147871033 7.37529350380349 7.49258314730035 7.62705288769612 8.02395239099576 8.06367538403137 7.09293134763525 7.26380008472246 7.85420997808848 8.06454655277575 7.4624708697303 7.77616190713112 7.79937968893081 7.5886933179021 7.38592994238446 7.76528367444653 7.5430619081055 0.179016582604387 0.172041852114472 0.186884139774758 0.185299497270312 0.175121642987693 0.187632348165682 0.177952721168481 0.175356163057833 0.19636384867755 0.171505251362502 0.171505251362502 0.182477778380840 0.177517523643547 0.181000385875937 0.176059866112004 0.178740387496420 0.177691942900421 0.186887068353464 0.176591104468128 2 2|0 -|/ 11411490 11412573 11412089.667 11411144 11415404 - gene protein_coding_gene FALSE TRUE AT2G26770.1|AT2G26770.2 plectin-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT3G56480.1); similar to plectin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68172.1); similar to Os01g0805700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044563.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.08143678022282 0.969476634256587 0.353363661377579 1 -0.155009632798285 15.1182104655784 0.08143678022282 0.036510679944297
AT1G53690_at 3.14911778886576 3.07433466335523 3.37961829199732 3.41213207438673 3.12365951795510 3.51397710181414 4.39009712272578 4.16560856610415 3.84829137084588 4.10799793244592 4.51030056971549 4.16450057179103 3.86492137740294 4.26975953237002 3.8164031432462 4.22140915452677 4.44908610766642 3.94351415051611 4.044068107177 0.192609359533142 0.187975098088551 0.188906029247118 0.187598274529866 0.186473116639933 0.194538270460682 0.198770409032083 0.198280068296672 0.198640808034705 0.198813275702409 0.204754663367981 0.189590258170265 0.186473116639933 0.190213068713380 0.191511817279308 0.188762336562687 0.189328042883019 0.195070722057485 0.200379639292995 1 1 - 20046510 20046987 20046737.818 20046308 20047012 - gene protein_coding_gene FALSE TRUE AT1G53690.1 DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative similar to DNA-directed RNA polymerases I, II, and III 7 kDa subunit, putative [Arabidopsis thaliana] (TAIR:AT5G41010.1); similar to PREDICTED: similar to DNA-directed RNA polymerases I, II, and III 7.0 kDa polypeptide (ABC10-alpha) (RPB7.0) (RPB10alpha) (RPABC4), partial [Apis mellifera] (GB:XP_001122738.1); contains InterPro domain RNA polymerase Rbp10; (InterPro:IPR006591) -0.091287549821484 -0.969208768624265 0.353491365051014 1 -0.155250204634728 7.60362112226418 -0.091287549821484 0.079188836604825
AT3G28670_at 4.63587218570374 5.11542962310033 4.84542516732046 4.92582047514477 5.33753528156607 4.84691109475969 5.24562115323701 4.90967865840678 4.78141648170427 4.43013563253719 4.89316804398577 4.77526834555201 4.65795049498874 4.55495395214148 4.64070597157616 5.14610967977449 4.23496721905936 4.8269121864586 4.30955790925457 0.201517827343129 0.194848261953781 0.197907383411473 0.202727906131147 0.207190622186572 0.192407374980560 0.205081549129567 0.194576980850368 0.205006272979736 0.198246143078617 0.192407374980560 0.196638974197063 0.199095930750821 0.196176507310942 0.197974635791783 0.195383297112537 0.200888555915434 0.197152129588728 0.209084147138647 3 3|0 +|/ 10747530 10748162 10747879.2 10745060 10748400 + gene protein_coding_gene FALSE TRUE AT3G28670.1 oxidoreductase/ zinc ion binding similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95579.1); similar to expressed protein, partial [Oryza sativa (japonica cultivar-group)] (GB:AAX95550.1); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085) 0.110745205889592 0.969007816400552 0.353587189953391 1 -0.155430644946557 9.59443228550023 0.110745205889592 0.132926732527416
ATCG01120_at 8.40853261761634 9.30633283891802 8.77779378595993 9.14528888925848 9.25992407932105 8.78680023214641 9.52994474336536 9.28283836393341 9.8351890485217 10.1427279645187 10.5812079681605 11.0320146172934 10.0316420685835 10.4502715746522 10.6106127364351 10.6125455479755 10.0417317317339 10.0596720259169 10.0626686618537 0.125760809188952 0.118423237714950 0.132100019165454 0.121865777694283 0.121476442425241 0.127512213276347 0.119007194647022 0.123771537329467 0.124247429489372 0.118423237714950 0.121038325214690 0.118423237714950 0.120649333669533 0.118423237714950 0.123321968463880 0.119071645292157 0.121079355646401 0.124794233226181 0.118763845482643 C C - 123362 123499 123425.182 123296 123562 - gene protein_coding_gene FALSE TRUE ATCG01120.1 encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex Identical to Chloroplast 30S ribosomal protein S15 (rps15) [Arabidopsis Thaliana] (GB:P56805); similar to ribosomal protein S15 [Eucalyptus globulus subsp. globulus] (GB:YP_636356.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15, bacterial chloroplast and mitochondrial type; (InterPro:IPR005290); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) 0.137236665629523 0.968876723238813 0.353649712381657 1 -0.155548340249146 19.2826773648858 0.137236665629523 0.191615015892525
AT1G51060_at 7.81483608143606 7.95458219825824 8.0015609134136 8.05045981093312 7.80064271556612 7.54500644098985 8.2584303004647 8.40190892848948 8.33604958710103 8.45634221761723 8.50272602175956 8.67070039897779 7.97738419100383 8.38393656525556 8.7144447167966 8.33434162059518 8.09350132802582 8.13701633177451 8.00063555208555 0.128441256588421 0.127297493074505 0.132869416903310 0.130627174406901 0.128299354886863 0.131299649692958 0.126559599286013 0.124069963077473 0.133866098028747 0.123426273769548 0.128388178703924 0.125054272027991 0.132007481822212 0.123662524279792 0.125635000292744 0.123426273769548 0.129859639059832 0.133257639580425 0.130570046300739 1 1 + 18930616 18931087 18930859.455 18930544 18931314 + gene protein_coding_gene FALSE TRUE AT1G51060.1 histone H2A, putative Identical to Probable histone H2A.1 (HTA10) [Arabidopsis Thaliana] (GB:Q9C681); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT3G20670.1); similar to Protein H2A.7 (wcH2A-4) (wcH2A-10) (GB:Q43312); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.08530398121539 -0.968769625347148 0.353700796640066 1 -0.155644482829078 16.2864778482147 -0.08530398121539 0.0568336653972085
AT2G42940_at 2.37483710630555 2.17910875960155 2.56646945936517 2.33521752532981 1.95065397056252 2.20492378187596 2.06029811768331 2.15963531609094 2.398404010436 2.52258205556098 2.53594430477332 2.27362211990782 2.36741117092259 2.52373802546294 2.52061071945730 2.73249525224479 2.8148224179905 2.65661946972087 2.41854515594272 0.218081417417575 0.210378389075520 0.215657415396301 0.214338363591495 0.210236142370467 0.21318722492892 0.22238061276443 0.215578638701548 0.217379869916870 0.212729840894113 0.215276077141464 0.211095588316912 0.217828627957656 0.218170121896702 0.209166521144930 0.209150385821179 0.216902984994048 0.213312661930486 0.221442441982264 2 2 - 17869577 17870095 17869793.364 17869331 17870533 - gene protein_coding_gene FALSE TRUE AT2G42940.1 DNA-binding family protein similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G45430.1); similar to Os04g0590200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053704.1); similar to hypothetical protein 23.t00073 [Brassica oleracea] (GB:ABD65635.1); similar to Os02g0448000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046754.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.0887469435549035 0.968481445291754 0.353838281119797 1 -0.155903140483927 4.72872717578847 0.0887469435549035 0.0705732235404412
AT3G21570_at 2.41295537891498 2.58604841134074 2.70849189005252 2.3664037894586 2.43332900406787 2.82679260049776 2.40840147893194 2.62743385366955 2.6969840062633 2.47175234480926 2.77544171998776 2.3163264169316 3.0173837567836 2.42063563551109 2.94023883881833 2.61809746278139 2.78448747010465 2.88993720297710 2.62441560245937 0.190870002894775 0.191790679803997 0.193950949788708 0.189541023958088 0.197298488635279 0.200505758552549 0.192763856057644 0.200094590779609 0.189110046267162 0.203576800167831 0.193500212830604 0.190202903072906 0.189821747542688 0.190254036390198 0.203189444890071 0.191394945319430 0.189704545195231 0.193133966548979 0.205101719309694 3 3 - 7600341 7600687 7600508.364 7600156 7600889 - gene protein_coding_gene FALSE TRUE AT3G21570.1 similar to Os01g0384800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043098.1) 0.0988228927239228 0.968256322851488 0.353945709013059 1 -0.156105156038850 5.2052499912822 0.0988228927239228 0.102347496654345
AT2G22475_at 5.06990164234004 5.5132041971692 5.35549266662597 5.17787068780913 4.99824976899468 5.42040366150569 4.50267772480199 4.85716900316718 4.43763163993416 3.62456239247459 4.37237555663079 3.67167374819941 3.93121262556904 3.87074457488262 3.88416649656719 3.60961242221870 3.85637380062462 4.15971024365562 3.80576607721436 0.241417304181933 0.242097683836728 0.244387528374857 0.247068947197710 0.24057666217487 0.255193317652788 0.237090413829228 0.238502653157884 0.244122575037791 0.242648608684268 0.233513516704041 0.237292641852677 0.241093661731368 0.241332306029296 0.244525440782481 0.237568617415788 0.240818998669369 0.240247234760855 0.235029845629656 2 0|2 /|+ 9551121 9551821 9551503.222 9548481 9552090 + gene protein_coding_gene FALSE TRUE AT2G22475.1|AT2G22475.2 GRAM domain-containing protein / ABA-responsive protein-related similar to ABA-responsive protein-related [Arabidopsis thaliana] (TAIR:AT4G40100.1); similar to putative ABA-responsive protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36095.1); similar to Os03g0187600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049211.1); contains InterPro domain GRAM; (InterPro:IPR004182) 0.107881517350031 0.967933111421338 0.354099985904198 1 -0.156395124519009 9.04960636242734 0.107881517350031 0.12621662126387
AT2G39300_at 1.69935128812152 2.06497976133263 1.96490320214405 1.31857833885338 1.40320855790575 1.45021350642217 1.45522913771010 1.65885390790374 1.60653851804708 1.96306849921084 1.94973637577295 1.58043517042309 1.94455400991808 1.85819075256085 1.92730923235880 1.39806015155485 1.55777528777089 1.84881608520000 1.81372733463852 0.185081094525052 0.185787792465986 0.187731353823593 0.182541292099809 0.185945015088416 0.191870886327282 0.182593052199683 0.185637757829018 0.200707954995107 0.190908386380714 0.187493154413779 0.182945803452381 0.185470006962623 0.183106543301302 0.183440695455566 0.187357108264139 0.195425273070047 0.192882599557179 0.187848186715766 2 2|0 -|/ 16417207 16418137 16417716.5 16417187 16419947 - gene protein_coding_gene FALSE TRUE AT2G39300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55060.1); similar to Moesin; Prefoldin [Medicago truncatula] (GB:ABE91351.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) -0.110856386603102 -0.967908915556232 0.354111537147632 1 -0.156416828561422 3.40319192112938 -0.110856386603102 0.133498244349469
AT1G64480_at 0.528699511362501 0.610978344719071 0.739703589570504 1.18793650936848 0.634056490471313 1.04916741981360 0.81377715619978 1.15874810512451 1.25201147815452 1.46999437375206 1.09448608912347 1.32289928608057 0.926477516876666 0.485962080191625 0.650505107609958 1.01934301028872 1.35887145334514 1.03773264404097 1.25071292975226 0.217883049253151 0.215339696717344 0.215005442260509 0.212861682029711 0.213929359457321 0.215984256796815 0.212999299328120 0.224175553296512 0.227474054549346 0.239879373705426 0.215476046247123 0.219462416815706 0.217026392166851 0.220058737641896 0.213356191966254 0.214249444698526 0.217792388044609 0.216701005913755 0.212861682029711 1 1|0 -|/ 23951704 23953328 23952472.111 23951691 23953414 - gene protein_coding_gene FALSE TRUE AT1G64480.1 CBL8 (CALCINEURIN B-LIKE PROTEIN 5) calcineurin B-like protein 8, member of plant-specific family of calcium sensor proteins containing 3 EF-hand motifs Identical to Calcineurin B-like protein 8 (CBL8) [Arabidopsis Thaliana] (GB:Q9FUQ7;GB:Q9SGW7); similar to SOS3 (SALT OVERLY SENSITIVE 3) [Arabidopsis thaliana] (TAIR:AT5G24270.1); similar to Os05g0534400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056148.1); similar to calcineurin B-like protein 4-1 [Populus euphratica] (GB:ABJ09703.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.106269861243567 -0.9677025762688 0.354210055744730 1 -0.156601899624372 1.99602051199418 -0.106269861243567 0.122246259899457
AT3G48810_at 4.07348358699126 3.65993429225452 3.90423393651873 3.95681092892223 3.59850659171448 4.11637446939806 3.60688635646181 3.89562636681914 4.35530929247864 4.14831196852302 4.19701051681642 3.65053017119498 4.12758660389587 4.3790626770715 4.32826999582917 3.90455286744266 4.79067870100808 4.33083854640382 3.74685603816990 0.184323951357210 0.1886248639576 0.198258556119341 0.189554804811717 0.191251008982074 0.189347533185139 0.186623777576441 0.188298919792857 0.192165708746136 0.196189958336643 0.194171603534186 0.193145468449579 0.197011865028389 0.190946507359048 0.184323951357210 0.187367882683909 0.190099972688228 0.193854502661867 0.188468444894328 3 3 + 18109437 18109985 18109663.091 18108033 18110012 + gene protein_coding_gene FALSE TRUE AT3G48810.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97191.1); similar to Os05g0132000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054555.1); similar to putative membrane-associated salt-inducible protein [Oryza sativa] (GB:AAG59660.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.107536328953662 0.967669938387575 0.354225640814081 1 -0.156631170390627 8.00001141264253 0.107536328953662 0.125431244173108
AT2G15800_at 1.22550679277053 1.61163788236592 1.73963435279048 1.77321175836913 1.34066713857829 1.27175688283473 1.57824613719669 1.72962348486206 2.01045322837905 2.12876596719151 1.56210027941027 1.93694102302801 1.84977930917557 1.36324716315110 1.84858717088571 2.10026778818005 1.75690479902116 1.47661814834042 1.59210228530009 0.193528420153708 0.195296915012877 0.191849352305126 0.193910929838222 0.199340940778087 0.192807295192919 0.203077808926655 0.196037574069302 0.200611741272156 0.194171323389949 0.2073402377521 0.195373663698879 0.196261868162861 0.199946283691390 0.197698293401703 0.198366681180102 0.196950502093344 0.19251797677412 0.195853637241406 2 2 + 6889117 6889644 6889379.818 6887907 6889823 + gene protein_coding_gene FALSE TRUE AT2G15800.1 unknown protein -0.0892854123150768 -0.967044149406048 0.354524559988669 1 -0.157192240987262 3.35740865560727 -0.0892854123150768 0.0729889480500008
AT3G55460_at 9.17126887930314 9.45958723749143 9.1813309291155 9.27762068448996 9.64991718309245 9.42345143361606 8.92691043877034 9.29749845634752 8.90589545087445 8.81396155665802 9.10128449066836 8.84881824881881 8.93719978380765 9.11728597218634 8.870450768292 8.97339928926757 8.2036141588386 8.83119611194937 8.79896759911503 0.135059498119058 0.123280452421534 0.134453408740153 0.125275926318132 0.130754808139304 0.131203413698304 0.127172541703814 0.129120929064563 0.143865857629774 0.133777779582288 0.126059400543470 0.126847860637434 0.128374280087809 0.127051299841508 0.130148370822400 0.126329026992456 0.159822489927765 0.134295686542084 0.123280452421534 3 3|0 +|/ 20572317 20574438 20573869.571 20571785 20574740 + gene protein_coding_gene FALSE TRUE AT3G55460.1 SCL30 (SC35-like splicing factor 30); RNA binding encodes an SC35-like splicing factor that is localized to nuclear specks. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to Os02g0252100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046448.1); similar to pre-mRNA splicing factor [Oryza sativa (japonica cultivar-group)] (GB:BAC78592.1); similar to Os12g0572400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067091.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0950308526815709 0.966893052140886 0.354596761537904 1 -0.15732766683174 18.1484553078755 0.0950308526815709 0.091738790497063
AT3G42390_at 2.43937779623332 2.79480504146592 2.88479949330365 2.95753847178159 2.09451638756794 2.71009305973237 2.30810480168622 2.62596884302455 2.79557366931516 2.68831219409024 2.22685512962037 2.28202307871234 2.24448007861767 2.52392393769063 2.17327639340673 2.33897085744623 2.42795134797135 2.90135140512284 2.71358571696918 0.184565426037478 0.193679396366542 0.184031819033139 0.183590867312803 0.181853976398766 0.186689264023770 0.183927993661065 0.189064325713174 0.180971286109786 0.179605598950308 0.178783019504769 0.182288535554613 0.182916715994494 0.182782805130294 0.184986420511621 0.181393018423792 0.183232526581203 0.183601221106322 0.184931506455846 3 3|0 -|/ 14529007 14529391 14529246.6 14529007 14529453 - gene protein_coding_gene FALSE TRUE AT3G42390.1 unknown protein -0.111481882862060 -0.966700212844234 0.354688924847311 1 -0.157500479836891 5.16307276453197 -0.111481882862060 0.135336234907625
AT4G26550_at 5.99557459418949 6.4690541796817 5.33932869410284 5.8415417050893 5.69720665957025 5.57463045401523 4.45217478085191 5.13997382587842 5.32361752014288 4.46146579451252 4.63689756069161 5.2060325760054 4.8613069299405 5.32070474279873 5.3842916529758 4.88823437025985 4.63442722698716 5.46530298485897 4.90067179582805 0.276539806516445 0.259510188857041 0.267645983095891 0.266570484119191 0.263743062381305 0.268126360284494 0.259881983634793 0.264863248515475 0.289550146530655 0.266774800656770 0.260769898778569 0.258172089891511 0.258172089891511 0.262345797533671 0.26995889878864 0.259898421762101 0.27591733778463 0.268450615471842 0.263198377610964 4 4|0 -|/ 13402773 13404107 13403435.25 13402521 13404351 - gene protein_coding_gene FALSE TRUE AT4G26550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56020.1); similar to Os06g0300300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057449.1); similar to Phosphatidylinositol-4-phosphate 5-Kinase family protein [Tetrahymena thermophila SB210] (GB:XP_001021172.1); similar to Os06g0608600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058041.1); contains InterPro domain SFT2-like; (InterPro:IPR011691) 0.126690292557148 0.96644503965116 0.354810905832183 1 -0.157729109437112 10.536136341202 0.126690292557148 0.169954594932737
AT1G43640_at 1.49890617724974 1.70567584190081 1.61331458236541 2.09133726230810 1.45359208625981 1.94723818296418 1.4145148852123 1.72255582668188 2.08695883078483 2.13096290449953 1.92900289971740 1.80785551585645 2.23414572149807 1.94142156840518 1.86656156898971 1.68614747284779 1.96138107355750 2.4274703779914 1.63199791760546 0.231305332231991 0.229748068211265 0.238881211458575 0.234184215362811 0.229275613828066 0.235767867408963 0.229275613828066 0.239849981670126 0.231003486642097 0.240364625977300 0.240193327598497 0.23245860182888 0.243948926220971 0.230436044690882 0.240297708140454 0.229275613828066 0.263594859292539 0.237803059538137 0.23583591120925 1 1 - 16442075 16442573 16442339.545 16441875 16444284 - gene protein_coding_gene FALSE TRUE AT1G43640.1 AtTLP5 (TUBBY LIKE PROTEIN 5); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP1 (TUBBY LIKE PROTEIN 1), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G76900.2); similar to Os04g0687900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054335.1); similar to Os05g0437900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055656.1); similar to CAA303719.1 protein [Oryza sativa] (GB:CAB53492.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) 0.111366201470594 0.966399986803051 0.354832445683380 1 -0.157769470603349 3.64675260186171 0.111366201470594 0.135141739562916
AT1G26780_at 0.842822112197071 0.933431186149 0.899889723319196 0.90491444555161 0.679836601506825 0.734601708724495 0.591228306779939 1.03582006295649 0.988246221830944 1.05183350079678 0.688616151208895 0.92686717511579 0.864681824417409 0.413641386159301 0.825774124916713 0.99771843858539 0.573411661164085 1.07613813974980 0.755182094699875 0.201777861416968 0.203018646387976 0.202725934031471 0.200432169944084 0.213284802259542 0.19822488275319 0.19822488275319 0.206953609528391 0.211302935896645 0.205433544916959 0.19822488275319 0.203759917188001 0.204170050754421 0.204070740934235 0.203886945227367 0.202626819077735 0.208963154404981 0.217680020474015 0.2120465924307 1 1 + 9271280 9272081 9271842.364 9271019 9272115 + gene protein_coding_gene FALSE TRUE AT1G26780.1 MYB117 (myb domain protein 117); transcription factor putative transcription factor (MYB117) similar to MYB105 (myb domain protein 105), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69560.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE80439.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0909563118448093 -0.965989498962454 0.355028744132183 1 -0.158137139446277 1.69162304428501 -0.0909563118448093 0.0790949362903837
AT4G34410_at 0.919046558255591 0.614890486103678 0.837696849939119 0.710749322934673 0.375882687061732 0.699835406753917 0.553254018899534 0.654814015866414 0.97026142531597 0.86809880002195 0.579156662624621 0.484765097336748 0.365715298034222 0.441304298974512 0.647465237706762 0.216603739135582 0.725274593992617 0.809357244566566 0.225160553027763 0.203333610246442 0.207376917577587 0.203208696703553 0.200728229351104 0.200107112665776 0.205397178378284 0.203028384946159 0.209808289700730 0.200107112665776 0.207136959489439 0.206972947925595 0.204283386057721 0.202405859551972 0.205640729970709 0.218065678052845 0.213791941233691 0.206883016141669 0.214634899198567 0.201387405986705 4 4 + 16452227 16452652 16452476.091 16451880 16453264 + gene protein_coding_gene FALSE TRUE AT4G34410.1 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G50080.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE80530.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.0917975955088585 -0.965975433712605 0.355035471630355 1 -0.158149735218922 1.28154393372767 -0.0917975955088585 0.081883642464061
AT1G31330_at 13.6566562388535 13.8147747162873 13.6491558468714 13.6781821131452 13.7301333402661 13.574571308643 13.9435143896660 14.1243894735996 14.4472464654754 14.3641923099698 14.5842105784633 14.5955660817801 14.4854974886337 14.4908776519764 14.3122955892429 14.3754101591663 13.8240404479922 14.6346201983357 14.2476281076444 0.05915468871596 0.0550276947490239 0.0607960767384663 0.0577189656973735 0.055107624778087 0.0583556866875275 0.0588977860531456 0.0558667589688929 0.0662297578590341 0.0553209876006361 0.056430987976227 0.0550276947490239 0.0564195595187979 0.0579299912807202 0.0602374158940005 0.0559514612149968 0.0650726805465503 0.0566423714980553 0.0560029670778072 1 1 - 11215047 11215830 11215459.636 11214805 11216018 - gene protein_coding_gene FALSE TRUE AT1G31330.1 PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. similar to photosystem I reaction center subunit III [Vigna radiata] (GB:AAD27880.2); contains InterPro domain Photosystem I reaction center protein PsaF, subunit III; (InterPro:IPR003666) -0.0835152861422586 -0.965820458083608 0.355109603542511 1 -0.158288509581025 28.1543407128225 -0.0835152861422586 0.0497842262180545
AT4G12570_at 6.98349367325198 7.53402497793914 7.44157870378284 7.46197854240956 7.80955621538076 7.82218188109317 6.6434263729188 6.80637246757793 6.51830172529672 6.60331464916686 5.88720058636457 5.64149680771285 6.07499920308661 5.69888475130624 5.23254555063889 6.53200139638518 6.40918096540033 5.64081012207474 7.05853955479466 0.230155253462445 0.226810397424252 0.231925702107966 0.232416554689792 0.233155709390975 0.236685427965809 0.230800022715270 0.23348099732921 0.259938346684409 0.230038110542190 0.226810397424252 0.238886396127024 0.226810397424252 0.229969655193697 0.237681032107261 0.228887055375494 0.235703307547351 0.243170530417088 0.232239309518589 4 4 + 7448211 7448781 7448518.545 7445359 7449083 + gene protein_coding_gene FALSE TRUE AT4G12570.1 UPL5 (UBIQUITIN PROTEIN LIGASE 5); ubiquitin-protein ligase similar to UPL1 (UBIQUITIN-PROTEIN LIGASE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G55860.1); similar to HECT-domain (ubiquitin-transferase), putative [Medicago truncatula] (GB:ABD32998.1); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.0975421287351428 -0.96574299635207 0.355146661204996 1 -0.158357866480847 13.6210058872729 -0.0975421287351428 0.0994442191141113
AT4G12330_at 0.580138180931647 0.520441447890579 0.342123070779133 0.444586175629072 0.500812601852475 0.232974699109013 0.590609025021673 0.605009217876145 0.316763827117995 0.0935807436772998 0.119866984020724 0.399620503382197 0.329868424215984 0.183761843129458 0.482882193083191 -0.0337302250565231 0.487182717741919 0.619818440399792 0.481037785748 0.189751147423437 0.197451279740355 0.19094763049432 0.190731599054082 0.190349296393911 0.189759448935204 0.199760437233221 0.189868736455314 0.194150432261955 0.206289993475206 0.19571644484347 0.198006850056198 0.193440045384961 0.199703085178047 0.192805013055649 0.202035209080428 0.201957486166276 0.196139395201166 0.203968288968899 4 4 - 7317778 7318330 7318020.091 7317558 7319737 - gene protein_coding_gene FALSE TRUE AT4G12330.1 CYP706A7 (cytochrome P450, family 706, subfamily A, polypeptide 7); oxygen binding member of CYP706A similar to CYP706A3 (cytochrome P450, family 706, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G44620.1); similar to putative cytochrome P450 [Matthiola incana] (GB:AAG34695.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0836969615770466 -0.965615621453676 0.355207603369020 1 -0.158471904090245 0.787479958534062 -0.0836969615770466 0.0507516240029716
AT2G43640_at 7.26337099537533 7.6648376374323 7.12106908030854 6.85653977548355 7.14892408760296 6.67951133664771 6.81629997904058 6.78917530485333 6.49875467056062 6.4442258922917 6.64462745930508 6.83602274616878 6.24254138716143 6.636518457852 6.7585356491332 6.24181351968735 6.16502689961324 6.2938278574699 6.56556257355169 0.221754328073191 0.195722149538057 0.196589678274097 0.199390341927905 0.207355326792717 0.217345390184315 0.201879858175943 0.209113337159050 0.230444024840014 0.202667122206777 0.208368747582733 0.201574990555022 0.206332252059115 0.203371413776341 0.204851455558084 0.195722149538057 0.202071838763999 0.198298230707784 0.213280015942697 2 2|0 -|/ 18104701 18105462 18105089.111 18104483 18106207 - gene protein_coding_gene FALSE TRUE AT2G43640.1|AT2G43640.2 signal recognition particle 14 kDa family protein / SRP14 family protein Identical to Signal recognition particle 14 kDa protein (SRP14) (SRP14) [Arabidopsis Thaliana] (GB:O04421;GB:O22839); similar to PREDICTED: similar to signal recognition particle 14kDa (homologous Alu RNA binding protein) isoform 1 [Macaca mulatta] (GB:XP_001092939.1); similar to Os04g0623700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053927.1); contains InterPro domain Signal recognition particle, 14 kDa protein; (InterPro:IPR003210); contains InterPro domain Signal recognition particle, 9 kDa and 14 kDa protein; (InterPro:IPR009018) -0.103696687125248 -0.96509819879624 0.355455240308119 1 -0.158935019629445 13.5325720041848 -0.103696687125248 0.116376565396354
AT2G39540_at 1.44771131426067 1.18649964956953 1.31771386803888 1.44898160991583 1.07675925589629 1.20813166382787 1.36790987754622 1.46196410141728 1.6601770440387 1.54667758535454 1.53479852143029 1.38004216373510 1.45231451388858 1.34880827259558 1.74090399253354 1.61059742908848 1.61040195939847 1.6554354942323 1.61984975989289 0.229892293859543 0.222093815678774 0.229061357246508 0.228196311881094 0.227707840114543 0.229074423105044 0.225213401051718 0.224205251012736 0.232931730713899 0.216358061029229 0.227476444521593 0.223689743611000 0.216358061029229 0.220688990260663 0.229163849710495 0.216358061029229 0.216358061029229 0.216358061029229 0.224370153366871 2 2|0 +|/ 16507945 16508295 16508132.833 16507944 16508319 + gene protein_coding_gene FALSE TRUE AT2G39540.1 gibberellin-regulated family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10588.2); similar to snakin-1 [Solanum tuberosum] (GB:CAC44032.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) -0.0851816530056471 -0.964841361738674 0.355578207960656 1 -0.159164823332819 2.88974104578816 -0.0851816530056471 0.0578032784278762
AT2G43400_at 5.20049599213563 5.44095370867909 4.9945623863271 4.8463359820743 6.01022166208064 5.45844932783863 4.97572514241214 5.51093859133269 5.36803391495872 5.14510663013522 5.09621811952113 5.45104236562845 5.40087379276735 5.74322778412239 5.65312383663575 5.7319328872787 4.94118066205234 4.98627364331515 5.06576547965116 0.259581224169812 0.246977535882715 0.256092867659437 0.249936075153417 0.254600182094991 0.273920453430726 0.250778691670322 0.254696272571994 0.262669173470237 0.257192089088089 0.248587090590384 0.250297026514392 0.247108428945686 0.254925734400963 0.251195011942931 0.247272015981756 0.268963277550371 0.2558544331074 0.246977535882715 2 2|0 +|/ 18030923 18031687 18031288.333 18028257 18032369 + gene protein_coding_gene FALSE TRUE AT2G43400.1 ETFQO (ELECTRON-TRANSFER FLAVOPROTEIN:UBIQUINONE OXIDOREDUCTASE); catalytic/ electron acceptor Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. similar to Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47885.1); similar to putative electron transfer oxidoreductase [Oryza sativa] (GB:AAK39567.1); similar to Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47884.1); contains InterPro domain Electron transfer flavoprotein-ubiquinone oxidoreductase; (InterPro:IPR007859); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.113939721220202 0.964694678476117 0.355648450272475 1 -0.159296044688058 10.5889367547751 0.113939721220202 0.141725021118950
AT3G14660_at 10.1192151015653 10.0176075960036 10.2269352978902 10.1584023115266 10.3867954216369 10.1321290061704 10.0203198900347 9.81815178029274 9.1723188012983 9.86982655957365 9.54474096047989 9.43031163933395 9.68201128942825 9.50463412225062 9.34929267515818 9.85451665214876 9.77910969910042 9.661800938511 9.94279489477318 0.0919991914241673 0.087594628210797 0.0902272924319676 0.0861028868441128 0.086828142174991 0.0909655479920766 0.088491629939236 0.0871342327127885 0.100760285554542 0.0861028868441128 0.0937515427303755 0.0897504453169169 0.0908300288555136 0.096005525746156 0.0947302198671845 0.088278872634364 0.0956707109273086 0.0928345395199035 0.0865623023665412 3 3 + 4926259 4926807 4926566.364 4924784 4927441 + gene protein_coding_gene FALSE TRUE AT3G14660.1 CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0856987062508183 0.964465252016102 0.355758335924325 1 -0.159501254055844 19.7411690501066 0.0856987062508183 0.0601343874006025
AT2G46505_at 8.33161029052618 8.45367542638385 8.0483651648154 8.2586599332284 8.05108430192584 7.53820282953403 8.14857796633649 8.34645666707967 7.8628046350744 7.67375852497212 8.11563083891207 8.38322782739552 8.5185174350209 8.16928660889294 8.26672494783919 8.62623115908145 8.12819051672257 8.36019793521193 7.79446875740805 0.204282767549643 0.200990330603276 0.209463008673461 0.207250810344909 0.204810594464383 0.226552535432808 0.216287285757244 0.199869440679310 0.218089751008608 0.213236728132257 0.208032686741723 0.203666576365679 0.199869440679310 0.200637328413143 0.221520301911451 0.199869440679310 0.214002389309349 0.223298392676568 0.221038721876966 2 2 - 19097112 19097482 19097309.364 19096801 19097621 - gene protein_coding_gene FALSE TRUE AT2G46505.1 SDH4 (Succinate dehydrogenase subunit 4) Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion. similar to succinate dehydrogenase subunit 4 [Podophyllum peltatum] (GB:AAK77855.1); similar to succinate oxido-reductase subunit 4 [Lonicera sp. Bergthorsson 0301] (GB:AAW47289.1); similar to succinate dehydrogenase subunit 4 [Gymnocladus dioica] (GB:AAK77856.1); contains domain Fumarate reductase respiratory complex transmembrane subunits (SSF81343) 0.0989941196387099 0.964066292811818 0.355949478903273 1 -0.159858004650037 16.1960848463718 0.0989941196387099 0.104024016624980
AT1G28360_at 1.42395319864430 1.07527366991884 1.31820800500426 1.44709869573672 1.08132633053906 1.61309610933464 1.22643630121822 1.41704118208093 1.94256775293971 1.58083182424383 1.82750380585559 1.54803703775641 1.48747933566106 1.96189555308148 1.6949323872753 1.74385505896601 1.82756708500786 2.10751388989899 1.41594214497361 0.234327870293094 0.226348243430318 0.226296505895520 0.227608593128217 0.222564772140562 0.227362325667022 0.225218935321376 0.222564772140562 0.237695446597579 0.226946484061192 0.222786716281296 0.224200419180286 0.232962127637081 0.222564772140562 0.222564772140562 0.226089647430021 0.226784357418679 0.227440185595833 0.228201622271624 1 1 + 9951981 9952442 9952260.091 9951835 9952726 + gene protein_coding_gene FALSE TRUE AT1G28360.1 ATERF12/ERF12 (ERF domain protein 12); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 12 (Ethylene-responsive element-binding factor 12) (EREBP-12) (AtERF12) (ERF12) [Arabidopsis Thaliana] (GB:Q94ID6;GB:Q9SGN3); similar to ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G15210.1); similar to ethylene responsive element binding protein C1 [Capsicum annuum] (GB:AAX20034.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.103828487828443 0.963999958718228 0.355981267009511 1 -0.159917308925933 3.03595181651307 0.103828487828443 0.117026358485057
AT2G32780_at 1.25724147901425 0.948279248420018 0.745003782157924 0.767850747025842 0.86032505131378 0.880062460616903 0.874944609828046 1.07663617441073 1.31314518488604 1.03379115774658 0.816704481095414 1.18389803757437 1.03669835272052 0.97563591429155 1.39024666989817 0.752402740257748 1.13139565702613 1.24962515859101 0.695872155944231 0.204417291113453 0.201638237664989 0.197030472711462 0.205166946644656 0.199098770405718 0.201908771286556 0.197030472711462 0.197030472711462 0.199405225138871 0.202375867744361 0.199573087003904 0.202219299247209 0.202362444647845 0.198768922986645 0.197852510808852 0.201748199658350 0.207575282121647 0.204041410909868 0.201168542742701 2 2|0 -|/ 13905527 13906125 13905824.9 13905508 13908947 - gene protein_coding_gene FALSE TRUE AT2G32780.1 ubiquitin-specific protease 1, putative (UBP1) Identical to Ubiquitin carboxyl-terminal hydrolase 1 (EC 3.1.2.15) (Ubiquitin thioesterase 1) (Ubiquitin-specific-processing protease 1) (Deubiquitinating enzyme 1) (AtUBP1) (UBP1) [Arabidopsis Thaliana] (GB:Q9FPT5;GB:O48839); similar to UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT1G04860.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type [Medicago truncatula] (GB:ABE89159.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.0865792453667017 -0.963486715192626 0.356227288686189 1 -0.160376046448754 1.96696563207718 -0.0865792453667017 0.0640649899374528
AT4G29270_at 2.14334929655001 2.35187462085251 2.09774770490490 2.00576904488617 1.48637381780247 2.33931549128924 1.87922229731003 1.75860672026184 2.60854074433341 2.07895142664320 2.19784987194675 1.92399856182234 2.35533009071305 1.92390352024720 1.89389673734518 1.79499271816160 2.37508653824536 2.54538743209350 2.25367630839421 0.18651663841377 0.185946873462077 0.194205767760279 0.185280480017365 0.190850860313977 0.190308661137106 0.190940758002750 0.199326678821054 0.192758783866595 0.186121027209309 0.188191601737742 0.193555332592560 0.183808170627628 0.186475097179945 0.204225447393769 0.190513462984118 0.189982374712631 0.189801274024217 0.186616885657890 4 4|0 -|/ 14423803 14424650 14424411.2 14423668 14424888 - gene protein_coding_gene FALSE TRUE AT4G29270.1 acid phosphatase class B family protein similar to acid phosphatase class B family protein [Arabidopsis thaliana] (TAIR:AT4G29260.1); similar to Plant acid phosphatase [Medicago truncatula] (GB:ABE84853.1); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519); contains InterPro domain Plant acid phosphatase; (InterPro:IPR010028) -0.119189430828986 -0.963358252385171 0.356288886086895 1 -0.160490834874878 4.22779662937155 -0.119189430828986 0.154203310030632
AT1G14330_at 7.23114149123376 7.33867956883192 7.47034590095553 7.60419383082354 6.3966857340037 6.91050608837024 6.36857362818274 6.83252983715691 7.28593045662348 7.13367423794365 7.55488327095113 7.13296691963773 7.16332362849416 7.29070588162586 7.21147540066583 7.15961674855156 7.07338750689647 7.42904239113164 7.15717934786291 0.183155535650142 0.177102498616311 0.184287663177759 0.192286805995770 0.181711313151211 0.178095577894217 0.184837621257516 0.179345942027715 0.177786674415067 0.187281775468394 0.182879602212505 0.176351469030324 0.174782155812836 0.182450777356342 0.172668349660841 0.175439957615401 0.184325809954353 0.172668349660841 0.185456402183634 1 1 - 4890371 4890909 4890642.636 4890113 4892246 - gene protein_coding_gene FALSE TRUE AT1G14330.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G02870.3); similar to kelch repeat-containing F-box family protein, putative [Solanum demissum] (GB:AAT40540.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.106182814102266 0.962638933496686 0.3566339383243 1 -0.161133350073776 14.2411752929303 0.106182814102266 0.123433770080892
AT1G12570_at 1.64349331521255 1.73960499060112 1.52637043757341 1.37340107824747 1.33137577721961 1.44105812892507 1.41510065222455 1.59786737679504 1.89256477771396 1.80943468675566 1.52346281587612 1.70805635343536 1.68103017444051 1.59550052044866 2.03815483136470 1.81756799677613 1.68388851692247 1.58845944508069 1.36631502296588 0.204413844218931 0.203777099763178 0.205294188581675 0.209884419722923 0.207739726604496 0.203157661091751 0.210656847083128 0.209999816721641 0.202644615377927 0.201710956535562 0.203901022208345 0.206624341449987 0.207008483314542 0.207469874017792 0.207068116279324 0.201963496195701 0.205345347023385 0.213387530476337 0.207231409486773 1 1 - 4278346 4278785 4278571.091 4277991 4280860 - gene protein_coding_gene FALSE TRUE AT1G12570.1 glucose-methanol-choline (GMC) oxidoreductase family protein similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G51950.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os04g0573100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053612.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) -0.082944154451174 -0.962543487662023 0.356679741095781 1 -0.161218574928662 3.20551059173564 -0.082944154451174 0.0483535209806592
AT3G14580_at 1.03984504793988 1.05873664018200 1.1639996175956 1.44062101957377 1.29209718614284 1.25897004611817 1.25931402236217 1.38132285339450 1.33405496904499 1.51831379569002 1.50166168109325 1.29234812569658 1.54002624450554 1.38243442995478 1.54974190210613 1.45288005704204 1.62594987678694 1.33222117022167 1.33599792339410 0.191360964500073 0.191616952784903 0.192031099312634 0.192226640789754 0.188284716169343 0.192075711691506 0.191194309042982 0.188958885740246 0.185800117002800 0.188285033816350 0.188385068936789 0.197670295786007 0.18788127011031 0.187769651845673 0.196141359958405 0.193580659049436 0.19212955835315 0.195575493647287 0.190302832424914 3 3 + 4903669 4904211 4903866.727 4903019 4904236 + gene protein_coding_gene FALSE TRUE AT3G14580.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46100.1); similar to OSJNBa0058K23.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE02149.2); similar to H0313F03.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86125.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0838265164687264 0.962290711725448 0.356801064263009 1 -0.161444248004174 2.66475338681473 0.0838265164687264 0.0527348005174887
ATCG00800_at 11.7277153514611 11.8749203280655 11.5765377866810 11.360454624577 11.8407523039609 11.2427845402611 12.2857557851275 12.2680856144118 12.4040806183176 12.4036420666529 13.0288908099639 13.2939806481773 12.3100701064054 12.6740279280385 12.8564778627671 12.7987740997226 11.962963974853 12.3761387249695 12.1908779244837 0.117740465794974 0.116882611160442 0.126045485941692 0.117413725467609 0.116882611160442 0.126598960548454 0.122491697728258 0.118428165362974 0.122422838218935 0.123630017193049 0.116882611160442 0.117187117849885 0.117525268074606 0.126417775227198 0.119602272785796 0.116882611160442 0.122350990913204 0.120917402563211 0.119910210658733 C C - 82879 83292 83081.545 82826 83482 - gene protein_coding_gene FALSE TRUE ATCG00800.1 encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex Identical to Chloroplast 30S ribosomal protein S3 (rps3) [Arabidopsis Thaliana] (GB:P56798); similar to ribosomal protein S3 [Gossypium hirsutum] (GB:YP_538974.1); contains InterPro domain Ribosomal protein S3, C-terminal; (InterPro:IPR001351); contains InterPro domain KH, type 2; (InterPro:IPR004044); contains InterPro domain Ribosomal protein S3, N-terminal; (InterPro:IPR008282); contains InterPro domain Bacterial ribosomal protein S3; (InterPro:IPR005704); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019) -0.102094153176170 -0.96218470777071 0.356851951107567 1 -0.161538871463532 24.2698919864083 -0.102094153176170 0.112982156287861
AT1G14660_at 2.88295372979949 2.79295505926685 2.59480303587216 2.11097335961099 2.81102368339326 2.50076571847860 2.46586017080940 2.15222774251612 2.4522612855619 2.61860398024304 1.89921086522716 2.31256930347640 2.33118921556366 2.51222838544156 2.28617324711741 2.47780326427743 2.44425284609234 2.51613810154781 2.37964978872463 0.221685174125904 0.206638099218733 0.220547073726734 0.215475250689898 0.215292330406816 0.220389589687119 0.22389811218672 0.210855470628382 0.217919455668365 0.209743854599163 0.206638099218733 0.206638099218733 0.210997585316986 0.217662614419038 0.210578587994239 0.207470712151990 0.206843003164423 0.214593793900092 0.219323202049503 1 1 - 5032171 5033025 5032736.909 5031967 5036443 - gene protein_coding_gene FALSE TRUE AT1G14660.1 ATNHX8 (Arabidopsis thaliana Na+/H+ exchanger 8); sodium:hydrogen antiporter member of putative Na+/H+ antiporter (AtNHX) family. Functions as a plasma membrane Li+/H+ antiporter. Involved in Li+ efflux and detoxification. Identical to Sodium/hydrogen exchanger 8 (Na(+)/H(+) exchanger 8) (NHE-8) (Protein SALT OVERLY SENSITIVE 1B) (NHX8) [Arabidopsis Thaliana] (GB:Q3YL57;GB:Q9LQW7;GB:Q9MA19); similar to SOS1 (SALT OVERLY SENSITIVE 1), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT2G01980.1); similar to putative plasmalemma Na+/H+ antiporter [Solanum lycopersicum] (GB:CAG30524.1); similar to Na+/H+ antiporter [Populus euphratica] (GB:ABF60872.1); similar to putative Na+/H+ antiporter [Suaeda japonica] (GB:BAE95196.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.102583545421385 -0.961835682395173 0.357019536484704 1 -0.161850364554888 4.9544206483531 -0.102583545421385 0.114375416025948
AT2G10380_at 2.28612478791084 1.85852129928325 2.18375908307552 2.19529328861919 1.57281949071801 1.68873222105255 1.49416575431658 1.96038259384898 2.35046000579681 2.54237754181537 1.95052362312937 2.03477387142594 2.16496628927398 2.39367451402099 2.06672223368024 1.99992705385672 2.87119575197092 2.31368818374885 2.42011989166641 0.206077277540751 0.202279017449561 0.208346994006705 0.203766227098752 0.199333530566874 0.202147136931294 0.214366115982291 0.206390313533319 0.207907694824908 0.215198271801748 0.199333530566874 0.199333530566874 0.215892059616347 0.199333530566874 0.200088814660314 0.199333530566874 0.203148742605737 0.207549716383043 0.207786173980088 2 0|2 /|+ 4006426 4006477 4006454 4005622 4006571 + gene protein_coding_gene FALSE TRUE AT2G10380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36070.1) -0.101433063797378 -0.96183510827479 0.35701981219664 1 -0.161850876860129 4.23601802480207 -0.101433063797378 0.111317563342445
AT2G02120_at 2.3216125180383 2.14567662613149 1.9814771202614 2.33740210063227 1.78357797962331 2.34184332907310 2.07299728332552 2.20655646148399 2.05283081815522 1.92608243434691 2.45926778331669 2.30732541358538 2.13519542685880 2.20798013209400 2.33449812215041 2.39322587433286 2.24366535538932 2.50267628463376 2.13290498356890 0.178768781517971 0.17842902484866 0.184445349063634 0.192054557524881 0.193485687894556 0.178058851627201 0.179387209571284 0.187672750992857 0.182705356112039 0.184931774934975 0.181598846283716 0.182767003594116 0.182099987256696 0.190878108345554 0.186992807045728 0.186129482016625 0.185804643416348 0.188926454071758 0.180739384880046 2 2 + 538344 538787 538704.636 538249 539054 + gene protein_coding_gene FALSE TRUE AT2G02120.1 LCR70/PDF2.1 (Low-molecular-weight cysteine-rich 70); protease inhibitor Identical to Low-molecular-weight cysteine-rich protein LCR70 precursor (LCR70) [Arabidopsis Thaliana] (GB:Q41914;GB:Q9ZUL6); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-rich 69), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02100.1); similar to protease inhibitor II (GB:AAA91049.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Gamma Purothionin; (InterPro:IPR008177); contains InterPro domain Knottin; (InterPro:IPR003614) 0.105035481920418 0.961686936590695 0.357090974350427 1 -0.161983086505886 4.32901894952226 0.105035481920418 0.120783512732866
AT3G54400_at 3.93199775152406 4.32476221484182 1.17792242641049 1.31777462447325 1.75576829330994 1.58389903356429 4.45511943120096 4.4396459018324 3.88733023475267 3.48327807537441 7.3924297379125 9.43240540239217 5.91927788905362 6.5191671644157 9.69758558477726 6.25128719357093 3.29466601057033 6.03557722867089 4.05417890772834 0.347009905670606 0.349533007444478 0.36329536129341 0.363878833659179 0.349716393172585 0.353324387125872 0.347009905670606 0.347009905670606 0.361512207147694 0.347009905670606 0.348953549266167 0.361190611830434 0.347009905670606 0.347009905670606 0.360042973246075 0.349570160048047 0.359769631591964 0.347009905670606 0.351902422942618 3 3 - 20151281 20152044 20151571.273 20151036 20153620 - gene protein_coding_gene FALSE TRUE AT3G54400.1 aspartyl protease family protein similar to pepsin A [Arabidopsis thaliana] (TAIR:AT5G07030.1); similar to Peptidase A1, pepsin [Medicago truncatula] (GB:ABE83791.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.09024844502915 0.961638466973285 0.357114254983449 1 -0.16202633097962 8.18639217583077 0.09024844502915 0.0780860216982045
AT1G35614_at 2.41722207275175 2.05899408210684 2.54924016799023 2.36977630221492 2.45173913271849 2.27685849697068 2.32098383500782 2.22439206227573 2.54574264792374 2.46039737165921 2.19438014239578 1.96001206852462 2.366693772905 1.82397297847132 2.49017654474154 2.48298740923530 2.62169758488725 2.69433663776168 1.91095725138604 0.187323836504394 0.187482004342720 0.194433286080049 0.189348387283408 0.191936211008285 0.191641142053587 0.186668222255593 0.189078091323364 0.190670211491312 0.192011046598953 0.192286542359447 0.186233977236165 0.192482577000212 0.189009996790172 0.190719770572990 0.188193056331031 0.188737031414629 0.19345092423961 0.196997883087852 1 1|0 +|/ 13148571 13149508 13148979 13148570 13149537 + gene protein_coding_gene FALSE TRUE AT1G35614.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35500.1) 0.0900442819901797 0.961359461292869 0.357248286537674 1 -0.162275223936091 4.65114138534871 0.0900442819901797 0.077478986848441
AT1G76910_at 1.82670308392715 2.19510150945724 1.87523929895602 1.95736195241321 1.61323105601677 2.23310193065674 2.12566863280961 2.09548955063715 2.31146663661105 1.97020143517517 2.06761137375577 2.00420779072717 1.90400855290859 2.35042161847631 2.16969488773093 2.14620087849166 1.87059208626518 2.06858774319793 2.15480256567214 0.188792061238930 0.187855758133688 0.183405142911274 0.184293058765574 0.197033340954884 0.186987976902583 0.182941207753113 0.191371226416746 0.187028301636931 0.185576322331660 0.189234638872029 0.182941207753113 0.190972964473499 0.185731480212094 0.187722485885311 0.186751209340191 0.186523743850934 0.186330429063112 0.192998402891080 1 1|0 +|/ 28892120 28892972 28892548.667 28892112 28892998 + gene protein_coding_gene FALSE TRUE AT1G76910.1 unknown protein -0.106915865369514 -0.961116030383146 0.357365257885298 1 -0.162492332622138 4.09931504132439 -0.106915865369514 0.125701576953628
AT2G01470_at 6.7138631431507 6.97053392395915 6.83910289821092 6.97502392737307 7.2975134237401 6.53723053327946 7.07984784638889 6.64182731469769 6.08250645289469 6.46435501767102 6.7022979056161 6.70358746460302 6.32611667327919 6.71250868869147 6.89224794337415 6.3059158744647 6.57156988721124 6.36443187408534 6.62374961589206 0.211658408159248 0.197604289071824 0.193280376361113 0.194038961574176 0.199732173670473 0.219428072299003 0.199657160619485 0.202480999909888 0.201666769560264 0.194906996998714 0.20039271463845 0.192906956345064 0.202649304857942 0.200418627492683 0.204885799320393 0.201915594252755 0.201397507477647 0.210394065204331 0.203537152214817 2 0|2 /|- 212244 213293 212719.857 211969 214471 - gene protein_coding_gene FALSE TRUE AT2G01470.1 STL2P (SEC12P-LIKE PROTEIN); nucleotide binding Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. Identical to Sec12-like protein 2 (STL2P) [Arabidopsis Thaliana] (GB:Q39221;GB:Q7EP29;GB:Q8VZ72); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50650.1); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50550.1); similar to St12p protein (GB:AAA32871.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.121415241015752 0.960754873783724 0.35753884853078 1 -0.162814353090906 13.3631369935508 0.121415241015752 0.159946560650892
AT1G80860_at 6.57952564502121 6.67126051467632 6.25986021682736 6.21014939871683 7.15317597119641 6.66606370570594 7.3906111876649 6.93149572467957 6.73317277715835 6.57994977591563 6.29792101252133 6.89544335526998 6.5962027364302 6.47743923039669 7.09633894704691 6.57093002600101 6.76723069692204 6.83358686570109 6.42109943827469 0.187061295063013 0.184512257527702 0.182453136411631 0.182965269003997 0.181768494849308 0.185765670719827 0.181435484522480 0.183431304006128 0.191590888235408 0.183666843227011 0.184839999800074 0.185740208292163 0.182283973180778 0.188677485461003 0.183486245305487 0.187285481674523 0.200369174076157 0.180535633272883 0.182129327217600 1 1|0 -|/ 30393329 30394136 30393818.8 30392927 30394194 - gene protein_coding_gene FALSE TRUE AT1G80860.1|AT1G80860.2 N-methyltransferase similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19687.1); contains InterPro domain Phospholipid methyltransferase; (InterPro:IPR007318) -0.103549166614463 -0.960653713415256 0.357587482335942 1 -0.162904533346294 13.3677480985123 -0.103549166614463 0.117237582874061
AT2G11090_at 0.83736902933701 0.839649301817173 0.699805567838717 0.545677698475953 0.446258257040784 0.855858039179415 0.776462963355071 0.587007671342613 0.785149485777477 1.04112345502586 0.941074608202477 0.36780665861171 1.34133509513235 0.914529865823847 0.505252180730713 0.87884795812906 1.25459902170514 1.05657607302556 1.07524556393323 0.177987697945145 0.181998376606487 0.18082936798667 0.185284666679781 0.179107862522168 0.178766912689957 0.183400938431096 0.177834130253069 0.183853074266943 0.181040613373590 0.182358129173856 0.177573045083503 0.187616178757029 0.181995507061138 0.184198466279508 0.177573045083503 0.183613323120413 0.180582869818598 0.184359973461164 2 0|2 /|- 4406517 4406922 4406726.444 4406516 4407042 - gene protein_coding_gene FALSE TRUE AT2G11090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07880.1) -0.0914462515356645 -0.960208939833099 0.357801367889208 1 -0.163300936797692 1.63584882483949 -0.0914462515356645 0.0825283682760644
AT3G30300_at 7.05614831641932 7.02426509968777 6.75226177477818 6.09756294633281 6.94015946883912 7.06211729522553 6.98848699806935 7.2142467448402 7.53557526896318 7.08293943144146 8.14069668514883 8.27711902933174 7.7523450529989 7.9813146560051 8.0569416475577 8.11047982666153 7.2188432521228 7.61867696120662 7.3604074942157 0.200000147956370 0.204942628835358 0.209079586975094 0.214788635982003 0.209177836334772 0.205931730853102 0.216293442964524 0.199664794255168 0.214409882012279 0.203509487198906 0.203143035722383 0.202792892536826 0.199590958647710 0.207738148947772 0.206384988462514 0.202917340964461 0.209121704233147 0.207137768724452 0.213793002204616 3 3 - 11923992 11924496 11924229.545 11923677 11926893 - gene protein_coding_gene FALSE TRUE AT3G30300.1 similar to EDA30 (embryo sac development arrest 30) [Arabidopsis thaliana] (TAIR:AT3G03810.1); similar to putative auxin-independent growth promoter protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85168.1); similar to Os05g0132500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054559.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.105241661106063 0.959881546168924 0.357958865803958 1 -0.163592628120462 14.502335849067 0.105241661106063 0.121814783273368
AT1G07840_at 4.79762276585766 4.65600536345957 4.92401038736667 4.80227007043831 4.76431048073731 5.0630874037575 5.02872244374191 4.89861838652335 4.1328141315851 3.95757715869249 4.1211905742071 4.43617574608144 3.96614759365406 4.24287773152594 4.80410087920726 4.21677838713949 3.82997464982788 4.43498095988533 4.29006413386632 0.213922809246612 0.208020855627952 0.209419922015962 0.206495253295831 0.20895603275659 0.205909504040673 0.205833475206583 0.206194848451919 0.219971897333289 0.207423619430959 0.208281757670436 0.205706404169338 0.211938451668971 0.218962440759959 0.207050434476209 0.206349277371893 0.209640396626673 0.211094154399462 0.205706404169338 1 1|0 +|/ 2425483 2426249 2425787.6 2424051 2426673 + gene protein_coding_gene FALSE TRUE AT1G07840.1|AT1G07840.2|AT1G07840.3 leucine zipper factor-related similar to Sas10/U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to neuroguidin isoform 1 [Homo sapiens] (GB:NP_001036100.1); similar to PREDICTED: neuroguidin isoform 5 [Pan troglodytes] (GB:XP_001163084.1); similar to Os01g0911000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045157.1); contains InterPro domain Sas10/Utp3; (InterPro:IPR007146)|similar to Sas10/U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to Disrupter of silencing SAS10 (ISS) [Ostreococcus tauri] (GB:CAL52517.1); similar to Os01g0911000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045157.1); contains InterPro domain Sas10/Utp3; (InterPro:IPR007146) 0.0864435930778733 0.959350278811802 0.358214546435213 1 -0.164065784615469 9.05850430768813 0.0864435930778733 0.0649983063063064
AT3G49890_at 3.59070534881149 3.3668959674336 3.6900167611979 3.65303962209654 3.53019643222409 3.57606060128817 4.15430933351011 3.60039018875337 2.59184694470491 3.09319651207195 3.03709650274154 2.80614014999504 3.07125994275202 2.61106519621415 2.82303549622487 2.62134444178164 2.94952182648456 2.92790732764109 3.27618393136035 0.215794292685889 0.21531229661286 0.216297478543254 0.212654811454641 0.219115945082276 0.208517093778334 0.230840006219266 0.216399731932827 0.215324974285833 0.206902101593804 0.207587679358884 0.211267828841573 0.222525086844880 0.213686755763831 0.209646488867110 0.209972204823092 0.213426699370661 0.216996944214310 0.20943266568932 3 3|0 +|/ 18510346 18511460 18510921.7 18510163 18511705 + gene protein_coding_gene FALSE TRUE AT3G49890.1 similar to hypothetical protein MtrDRAFT_AC147000g8v1 [Medicago truncatula] (GB:ABE85871.1) -0.0984506454959203 -0.95924409307281 0.358265665699432 1 -0.164160329462568 6.56670036017696 -0.0984506454959203 0.103888721551844
AT4G11610_at 0.292711653750774 0.517820069161938 0.80589302947956 0.668887931966425 0.722978668410259 0.750039897183704 0.479127862671205 0.518424497489873 0.745328208839036 0.629814233709017 0.534437176240617 0.658626355178522 0.784224281702698 0.7840179323286 0.201216437595975 0.457738278741742 0.647986750333736 0.189251225206155 0.58260378782415 0.206294195428586 0.209361011638703 0.202267804494689 0.208502569324319 0.205638630822388 0.209475158454701 0.220592262456885 0.215110244172316 0.217293647930634 0.206719577265104 0.207585046871030 0.208076386669852 0.21388670850341 0.206474073090861 0.215340488063698 0.216433286160155 0.216257301028718 0.221762818869403 0.21464529573957 4 4 - 7013982 7014525 7014277.364 7013723 7018043 - gene protein_coding_gene FALSE TRUE AT4G11610.1 NTRB (NADPH-dependent thioredoxin reductase B) NADPH-dependent thioredoxin reductase, major mitochondrial isoform similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00700.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12970.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57880.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to H0306F12.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86177.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0822670444334054 0.959211900343789 0.358281164754228 1 -0.164188991258915 1.18687014199259 0.0822670444334054 0.0463452961646313
AT1G53660_at 0.508421572346841 0.870873649976763 1.05937258652116 0.93674047039818 0.947645179694526 1.01940075027693 0.963224678774187 1.07901432698913 1.22668340053579 1.06353501910455 0.245689113804772 1.04010029108952 0.521378933909803 0.521588901994478 0.521746402924042 0.564892237240864 0.909149988558299 1.28943343679288 0.748107958445162 0.203958851023327 0.209352932151014 0.214559181091474 0.203958851023327 0.203958851023327 0.211828516315570 0.207488347263920 0.204823632008932 0.206883307484809 0.208914782038780 0.206604593479715 0.21115239519959 0.213938816692033 0.211600103997542 0.20629108522932 0.213753072775174 0.211013837772856 0.212528816256776 0.208062074292340 1 1|0 +|/ 20038795 20039588 20039220.5 20036950 20039614 + gene protein_coding_gene FALSE TRUE AT1G53660.1 phosphate translocator-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT3G14410.1); similar to Os08g0135100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060938.1); similar to putative phosphate/phosphoenolpyruvate translocator [Sorghum bicolor] (GB:AAL73533.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.087810928185766 -0.959110870145302 0.358329808449867 1 -0.164278935161681 1.78034808819780 -0.087810928185766 0.0702879468945783
AT3G49100_at 5.07026048900325 5.24425312120141 5.10108534266985 4.69320423988607 4.63348764642831 4.69999011163139 4.16088103150394 4.1451354097079 3.94641063840562 3.79747463394585 4.19664343061161 4.26018672954129 3.81059390140136 4.06651159397506 3.89738668024018 3.74388850595884 3.54240078226815 3.59336555482727 3.76389301234996 0.217037563986296 0.215076815389311 0.216235500733406 0.212643221247769 0.227603065662888 0.215906426533703 0.221150450850387 0.212150432623572 0.225232309015887 0.211828151237085 0.218114460635293 0.216299941106852 0.223142427845573 0.214168267594816 0.217209188381006 0.212753636701072 0.221039820186103 0.230361122575298 0.222191513182053 3 3|0 +|/ 18207929 18209235 18208467.556 18207824 18209442 + gene protein_coding_gene FALSE TRUE AT3G49100.1 signal recognition particle 9 kDa protein, putative / SRP9, putative Identical to Signal recognition particle 9 kDa protein (SRP9) (SRP9) [Arabidopsis Thaliana] (GB:Q9SMU7); similar to Signal recognition particle 9 kDa protein (SRP9) (GB:O04438); contains InterPro domain Signal recognition particle 9 kDa; (InterPro:IPR008832); contains InterPro domain Signal recognition particle, 9 kDa and 14 kDa protein; (InterPro:IPR009018) 0.089877687376135 0.959061534273558 0.358353564251605 1 -0.164322854420989 8.58093629513073 0.089877687376135 0.0776456246811877
AT2G46750_at 1.57860845340736 1.48428511563211 1.96872948651545 1.77026449004074 1.37219031726257 1.65649211288876 1.50687891624177 1.47118902170403 1.71614764045727 1.72181662794060 1.58172170432093 1.69120859038869 1.59476114581256 1.79603864998050 1.9604462639011 1.89268990520906 2.09748397674014 2.08006726066036 2.10285398653450 0.218664822820718 0.223297484133164 0.218462478787063 0.219146717107769 0.218829207329389 0.23281077289697 0.226057882199054 0.226023269681440 0.226735055149272 0.219219177014842 0.225313391041249 0.223903523995260 0.223641662171089 0.219527643621829 0.220312207555565 0.222220454785397 0.226302946397820 0.217105941852198 0.221669477620196 2 2 - 19215536 19216078 19215867.545 19215390 19218028 - gene protein_coding_gene FALSE TRUE AT2G46750.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46740.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46760.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G56490.1); similar to Os08g0114300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060850.1); similar to Putative FAD binding domain containing protein, identical [Solanum tuberosum] (GB:AAV31183.1); similar to Os03g0563100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050492.1); contains InterPro domain Plant-specific FAD-dependent oxidoreductase; (InterPro:IPR010030); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) 0.085770746873221 0.95885403604253 0.358453489476320 1 -0.164507550730436 3.44295054193033 0.085770746873221 0.062488437557487
AT4G28410_at 2.07601584549022 1.45054255633827 1.89012270964676 2.02556793053501 1.33098486379499 2.10642087153981 1.49580543175901 1.88767165603697 2.27715043596996 1.37611638354842 2.19277059814065 1.89648244853576 2.02835304545407 1.8316662308422 1.96147008052467 1.75076584012754 1.77615987068129 1.88099012043465 1.62296566811526 0.223318220309579 0.222494300018806 0.228818065438536 0.230294850279674 0.226257253232623 0.218528341029685 0.225348356847002 0.219421855688374 0.22264608953376 0.227167692116 0.222137571506431 0.217186774908416 0.218854692283433 0.228855413267437 0.228653889704496 0.221124668159013 0.224285258788122 0.219106205186099 0.221580154088529 4 4 + 14052397 14052694 14052538.455 14052248 14055018 + gene protein_coding_gene FALSE TRUE AT4G28410.1 aminotransferase-related similar to SUR1 (SUPERROOT 1), transaminase [Arabidopsis thaliana] (TAIR:AT2G20610.1); similar to Os11g0552000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068082.1); similar to putative nicotianamine aminotransferase A [Oryza sativa (japonica cultivar-group)] (GB:BAD23582.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.133426669135539 0.95830920881901 0.358715958005205 1 -0.164992348759093 3.61967970408621 0.133426669135539 0.186740527189765
AT2G10090_at 1.94809697480659 2.17066262816835 2.00844171346584 2.21918737982997 1.81607975539642 1.92416278471010 2.01542644879665 2.12471157835546 1.9702814095001 1.75281804409762 2.06370039953787 2.50864886473866 2.23236092149359 2.26951160071980 1.95742344528568 2.20636747499796 2.18509966991787 2.63533774466175 2.32086907995232 0.173424629033441 0.176399616950566 0.180825893741648 0.175071772285579 0.175361800320145 0.175209087528793 0.179789217758935 0.177638655694866 0.177668899015272 0.176061460261928 0.176968929115003 0.176075974201118 0.177781489201291 0.175760198324178 0.179782939266194 0.173424629033441 0.178121613423056 0.184526913016852 0.177212947646351 2 2 - 3830614 3830944 3830765.727 3830613 3830972 - gene protein_coding_gene FALSE TRUE AT2G10090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04460.1); similar to pol polyprotein [Citrus x paradisi] (GB:AAK70407.1) 0.0849467940689783 0.95812527273475 0.358804599707209 1 -0.165155966947589 4.16432737945075 0.0849467940689783 0.0593389242866988
AT2G13350_at 2.16845999198941 1.75033880569442 2.14038180355554 2.30650675846328 2.05608257312838 2.44782428180423 1.88711978249941 1.93041588946764 3.24506265613337 2.52846755801535 2.07585421219725 2.18391053904875 2.22846679422952 2.48487531845306 2.12255143206174 2.32126137146896 2.84676783817942 3.15507269092281 3.00851094214972 0.199831213658761 0.196690224431527 0.196833611136750 0.193650923165101 0.198032115144332 0.206183851043914 0.193650923165101 0.207557886253920 0.197438800223870 0.195581209691123 0.198560767732427 0.197384999454806 0.193650923165101 0.193650923165101 0.199072507143838 0.199724530712906 0.203028725937914 0.193650923165101 0.195911033145770 2 2 - 5543643 5544129 5543913.818 5543474 5544963 - gene protein_coding_gene FALSE TRUE AT2G13350.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G33320.1); similar to C2 calcium/lipid-binding re (GB:ABE92950.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.0981933953520782 -0.95805468712121 0.358838620205257 1 -0.165218748612998 4.76323727416012 -0.0981933953520782 0.103509106408807
AT4G01700_at 8.30131472013425 8.89271729993006 8.00235878185607 8.22591643621765 4.26581012161164 4.03281376565503 2.53340018936798 2.91405640730699 5.13147935747904 3.20830931817395 3.28947116785313 4.1849209145678 3.06826800968237 3.45656010618987 3.80405885374611 4.06644976500623 4.18139337938509 3.73403736733246 3.5842877501422 0.303855213784868 0.289815048868435 0.291622086459395 0.293521552250786 0.281064686834041 0.291271252024073 0.275927849099528 0.280811234531782 0.274962823810773 0.271776727480999 0.293679829045271 0.281929959094347 0.27914159552388 0.284363856035454 0.278818607679258 0.280172221940038 0.290978307402512 0.279930289119423 0.269333719686147 4 4|0 -|/ 732420 733200 732786.4 732313 733510 - gene protein_coding_gene FALSE TRUE AT4G01700.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT1G02360.1); similar to chitinase (class II) [Arachis hypogaea] (GB:CAA57773.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 0.109902712844467 0.958044084723959 0.358843730495342 1 -0.165228178476266 9.74496700896102 0.109902712844467 0.133927036116286
AT1G31000_at 0.856407893943433 1.34340635875695 0.694070771379991 1.36966132381456 0.993647638895143 1.01398587451313 0.745612882505385 1.16340432896641 0.716525407437408 0.860312537347962 0.761876936923196 1.17888062564970 1.24198274363440 1.58334516930049 1.02494817991494 0.779713040204421 1.40001074498091 1.18199760796041 1.09738642990589 0.211152214263125 0.217730437516915 0.206467053338092 0.207369015070713 0.221993657195617 0.20777295605816 0.209102703627327 0.215958962948239 0.245359334712679 0.211873404801345 0.206467053338092 0.209268140802862 0.214734393845779 0.214334915257611 0.214366302440406 0.209186125008394 0.216518669275186 0.211038502093513 0.210392329885873 1 1 - 11053384 11053883 11053628.636 11053358 11054542 - gene protein_coding_gene FALSE TRUE AT1G31000.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G11590.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.121659896140816 0.957978469294256 0.358875357890508 1 -0.165286535471531 2.04027588708095 0.121659896140816 0.161280395327183
AT1G03330_at 9.23088981067914 9.14918466728065 9.22306778489172 9.31596529598205 9.67481474256292 9.2335505242137 9.38274199710158 9.30352477048691 9.11680546087616 8.68737977866474 9.0634805852817 9.06568459250877 9.159428031355 9.17604604477514 8.97941074825132 9.16794561389585 8.74069304159611 8.88683608026145 9.02790789300023 0.132621927792433 0.126576507600685 0.125393318542128 0.123780849064667 0.124561393399372 0.136061643432125 0.117667062371795 0.124662672185183 0.136168343182251 0.124947029587104 0.126922534502278 0.122940374768268 0.124985059906789 0.117877378785564 0.130942391327631 0.120075358937660 0.126808055246867 0.117667062371795 0.117667062371795 1 1|0 -|/ 818182 819055 818591.3 817983 819563 - gene protein_coding_gene FALSE TRUE AT1G03330.1 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative similar to putative snRNP core protein SMX5d [Oryza sativa (japonica cultivar-group)] (GB:BAC99422.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.0905869117929117 0.95767707177218 0.359020660696261 1 -0.165554549407072 18.3012032673603 0.0905869117929117 0.080483472524431
AT1G50340_at 0.958158250651068 1.04659737630645 1.31397958012657 1.58494960945517 0.745500716332716 1.16468340888477 0.866347735851615 1.26713368999881 1.76208790420380 1.43067216189681 1.46198987310986 1.13423536026897 1.60055437862433 1.00799499235903 0.88105387862086 1.15325013833108 0.963893966534116 1.05289653007882 1.38818389202865 0.220870448999221 0.227249989002175 0.229102616914004 0.223408367631123 0.225395526717942 0.226389281790417 0.229061669290159 0.217980377027261 0.23427062365505 0.224266912421520 0.221822907795507 0.226070425623135 0.220532535831027 0.217980377027261 0.222613498626878 0.220388204810154 0.217980377027261 0.223954555818745 0.232407713723644 1 1 - 18651168 18651490 18651296.4 18651044 18651517 - gene protein_coding_gene FALSE TRUE AT1G50340.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G48010.1); similar to pectinmethylesterase inhibitor [Actinidia deliciosa] (GB:BAC54966.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186) -0.101139307068859 -0.957242313894647 0.359230330525841 1 -0.165941028681443 2.46040127550955 -0.101139307068859 0.111829973305786
AT1G35500_at 2.08127624802214 1.97857825927133 2.38769851903637 2.20973730398768 2.08159753132599 2.32053102898540 2.08014780820345 1.88046319588058 2.08393522437425 2.46796272880669 2.79779404107207 1.97436229004659 2.00210990516323 1.78168488691101 2.04066493855244 2.00132983815428 2.66712766812273 2.14071668761765 2.19279228755717 0.185305394871641 0.184382758142814 0.186493245254140 0.193384318271190 0.184382758142814 0.19056489425253 0.191402563698731 0.190813975600198 0.201291995007889 0.187598987664698 0.196736002922403 0.189128494608638 0.18626389508296 0.189352257776113 0.186194362670396 0.189802430868154 0.188441443320357 0.18842333638426 0.190742484877621 1 1 + 13066065 13066510 13066248.818 13066065 13066574 + gene protein_coding_gene FALSE TRUE AT1G35500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35614.1) 0.0861342098492269 0.957144425779396 0.359277550958228 1 -0.166028026454407 4.33948066793964 0.0861342098492269 0.0645612730615042
AT3G30320_at 1.47617567828844 1.37753835257584 1.89154372952872 1.65119493237414 1.46368313710193 1.57067026321889 1.63005739297446 1.71614318523314 1.80800751499103 2.14867266673583 1.79712368580183 1.68750714987745 1.51883213136068 1.45598076609388 1.46454681847219 1.26528777819765 1.80739560981872 1.07997726730116 1.35277343356538 0.160108093806833 0.168316729372793 0.160461481727463 0.165559627864838 0.160108093806833 0.163132786208378 0.165749017285832 0.160989981826463 0.165438266703619 0.160108093806833 0.166254411328214 0.164985702374235 0.160108093806833 0.161586433289199 0.161241931827666 0.162670916867920 0.164846059822262 0.167254435293182 0.167653682485896 3 3 + 11936675 11937103 11936915.727 11933766 11937173 + gene protein_coding_gene FALSE TRUE AT3G30320.1 unknown protein -0.0829710538053425 -0.956997530305306 0.359348420503375 1 -0.166158565474202 3.23682547022671 -0.0829710538053425 0.0508538951838226
AT2G16340_at 5.254595419452 4.69834982429652 5.62260368249652 4.92528969515295 4.77695195786755 5.24010497931396 5.05786332423288 5.07420231766513 6.18674947795689 5.37724606155232 5.58099236254421 5.77679682030349 6.09909827548688 5.3543398666073 5.81310457895264 5.37188001435903 6.04050883401547 6.38415615647806 5.44015921832083 0.231073963832351 0.235163191663400 0.235676650754965 0.223910406669252 0.221983387647422 0.244423056789822 0.224823191375594 0.234052923560108 0.225866370389049 0.222768024853571 0.229527391154161 0.227027614713090 0.219846691258939 0.226700603934709 0.22097686640907 0.217553652892182 0.221889153873615 0.219375136158472 0.220298694623596 2 2|0 +|/ 7080217 7080469 7080368.6 7080216 7080566 + gene protein_coding_gene FALSE TRUE AT2G16340.1 unknown protein 0.127271442473076 0.956898839026773 0.359396039627745 1 -0.166246258349694 10.8165757498281 0.127271442473076 0.17395511645089
AT4G39490_at 0.541670811065764 0.559079510513972 0.693480201012589 0.926112089554081 0.323228711404735 0.736131165321838 0.75566441391674 0.711871701374431 1.38433537881175 1.04602282015379 1.0041464975058 0.871882390865906 0.797192998030758 0.783014195071244 1.42895661583425 0.799994838692534 0.81212606169259 1.33181311355341 1.13495408513589 0.178145611992943 0.174698783190894 0.176782692990630 0.180916574766154 0.172406526239549 0.179636955774285 0.172677104170404 0.175138896848121 0.171419099299068 0.178876486982227 0.176349107708659 0.177760157216719 0.180330293829760 0.181477899124259 0.182566495711162 0.174736389495437 0.174913011445096 0.192723768536544 0.179430270994714 4 4 + 18366206 18366703 18366399 18365043 18366882 + gene protein_coding_gene FALSE TRUE AT4G39490.1 CYP96A10 (cytochrome P450, family 96, subfamily A, polypeptide 10); heme binding / iron ion binding / monooxygenase member of CYP96A similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A9 (cytochrome P450, family 96, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39480.1); similar to CYP96A1 (cytochrome P450, family 96, subfamily A, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G23180.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0910650782612074 -0.956554325557606 0.359562304913094 1 -0.166552319347276 1.73944395899033 -0.0910650782612074 0.0824196153491599
AT1G66110_at 1.91958739499703 1.80305207656854 2.45266025253637 2.40630801722821 1.71653636438226 2.15065700440911 2.27584811526838 2.05567368516671 2.22654661056337 2.72352434342204 1.83197566033753 2.02609285097213 1.80388801465261 1.95596777627332 2.01794111436397 1.94245641947465 2.11050716146644 2.73886330987492 2.26916704743097 0.188974655051991 0.191329370957956 0.189880824206993 0.193696900536373 0.190790646709437 0.184319411136638 0.192206550186556 0.193392612302772 0.189720952431884 0.184319411136638 0.187994623280235 0.190588479593279 0.191492495835827 0.188455670226291 0.185868361809283 0.187101435935193 0.186553539502811 0.190396720761015 0.186341884770163 1 1|0 -|/ 24612774 24613454 24613225.5 24612757 24613895 - gene protein_coding_gene FALSE TRUE AT1G66110.1 similar to binding [Arabidopsis thaliana] (TAIR:AT5G37410.1); contains InterPro domain Protein of unknown function DUF577; (InterPro:IPR007598) -0.0924755185365143 -0.956475065360952 0.359600564403784 1 -0.166622720022719 4.32747746660245 -0.0924755185365143 0.0869875616581864
AT3G29400_at 7.1239669740067 7.11087526749709 7.28663742290908 7.30969152598392 6.97991586722618 6.99056133789165 7.01345071558329 7.04613721847494 6.33311107381679 5.86937990939468 5.77900411584450 5.86761622084171 6.01803530309607 6.0424606854937 5.46584324811602 5.86312366312849 5.93470426822574 5.72004578022903 5.97659796360536 0.191541963615191 0.194502360232816 0.190315412738029 0.190518151804037 0.189094499997566 0.192821691787315 0.197118521177536 0.200008339261659 0.203553513597883 0.188129241054318 0.190699048040296 0.189325243565286 0.210077890097324 0.202277139016129 0.207876353398049 0.191709662013678 0.198686755479114 0.200174905934531 0.193943429932987 3 3 - 11298601 11299149 11298888.545 11298520 11300857 - gene protein_coding_gene FALSE TRUE AT3G29400.1 ATEXO70E1 (exocyst subunit EXO70 family protein E1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70F1 (exocyst subunit EXO70 family protein F1), protein binding [Arabidopsis thaliana] (TAIR:AT5G50380.1); similar to Os01g0763700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044336.1); similar to leucine zipper-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB63582.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) -0.0776240801857473 -0.956440174145475 0.359617407580992 1 -0.166653709638911 13.0556797793104 -0.0776240801857473 0.007512681396225
AT3G19780_at 1.55705733067990 1.54638519017231 1.89905679048689 1.71913227475633 1.82346833060761 1.59014413481167 1.63625534080760 1.72989749345831 2.22877134999842 1.78908700841994 2.03896181827588 2.01088013673834 1.94628004903458 2.12353705742158 1.92548733620801 1.82851021128479 1.99450973635037 2.11709508970267 1.89736649712601 0.132103561610463 0.133918033642050 0.133098996482777 0.131715937086229 0.130645587542467 0.134535051889637 0.140908045594781 0.132187779482827 0.141326085333469 0.131673121011602 0.131461202446914 0.134921849154424 0.139196308286839 0.139523690849143 0.133180549172029 0.135941866886115 0.135954921224530 0.132194738869245 0.138110000179383 3 3 + 6870900 6870910 6870905.111 6870205 6874856 + gene protein_coding_gene FALSE TRUE AT3G19780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33780.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE78179.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein of unknown function DUF179; (InterPro:IPR003774) 0.0834838023741677 0.956391096111425 0.359641100176610 1 -0.166697298084277 3.67262425966848 0.0834838023741677 0.0535339949668092
AT2G46700_at 4.39679768247798 4.00980932067456 4.07730159721633 3.96270744687653 4.42962855311397 4.05475854690066 4.51963901479214 4.24721356822149 4.41165271058719 3.99535002002169 4.61163956518631 4.89664211003514 4.64097211248465 4.70554670213514 4.79343558936563 4.4020617408955 4.58405395474786 4.44879771143508 4.41828201630554 0.215910348702182 0.216226070423773 0.207625576203756 0.215205389423132 0.214417537995893 0.214161659337647 0.212021808551901 0.212716786342558 0.213684680040391 0.210610642556589 0.209039860485623 0.209801792089051 0.215946354375962 0.211307705018639 0.207625576203756 0.20766450054934 0.211236980443884 0.213796486572494 0.207625576203756 2 0|2 /|- 19190056 19190875 19190352.714 19189794 19193648 - gene protein_coding_gene FALSE TRUE AT2G46700.1 calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT5G24430.1); similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G49370.1); similar to calcium/calmodulin dependent protein kinase MCK2 [Zea mays] (GB:AAG01179.1); similar to calcium/calmodulin-dependent protein kinase homolog|CaM kinase homolog|MCK1 [Zea mays] (GB:AAB47181.1); similar to CDPK-related protein kinase [Zea mays] (GB:BAA12692.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0990164548164268 0.956177663078827 0.359744148760888 1 -0.166886836050455 8.6674762669961 0.0990164548164268 0.106345569825393
AT3G09670_at 4.4045027509568 3.9888135513502 4.01171985172304 4.14021955475432 4.02078012942271 4.71797721393507 3.57035082511945 3.83261252824739 3.49071204412681 3.34984830217947 3.46805837657641 3.34272392478254 3.71509845360101 2.85356305485342 4.07533747342508 3.61046075402194 3.456677618504 3.5917742180395 3.82612754352283 0.207763699424637 0.198435266525363 0.209585073868946 0.20291980932164 0.207171844541562 0.217477134354154 0.204479249746223 0.19868615371204 0.210062358165219 0.198435266525363 0.199415226946653 0.202341184770337 0.203964250720644 0.204459360438323 0.198631377280531 0.199837118877065 0.198702786505934 0.198435266525363 0.202606079141512 3 3 + 2968327 2968771 2968498.455 2966380 2968975 + gene protein_coding_gene FALSE TRUE AT3G09670.1|AT3G09670.2 PWWP domain-containing protein similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02950.1); similar to PWWP domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX94928.1); similar to PWWP domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22458.1); contains InterPro domain PWWP; (InterPro:IPR000313) 0.116126688911390 0.95588674678807 0.359884641511099 1 -0.167145125831297 7.62075923277289 0.116126688911390 0.149286572406874
AT3G42090_at 0.248698361935983 0.63916839520419 0.687368993326974 0.592463272876161 0.219449327712665 0.813777621172312 0.392724904612691 0.564929181216337 0.133537931080385 0.530742174181131 0.629524587585052 0.141820009208308 0.211096912497441 0.423690125138145 0.385307355233772 0.470322119727297 0.51051805504608 0.363145925325685 0.219562146280418 0.184998358746122 0.185929306129596 0.184098477966460 0.184627411583329 0.182542900302913 0.185047350831512 0.182695293014129 0.184884865632054 0.182946826380270 0.192801012876383 0.183997308023078 0.188991562499605 0.185723340910163 0.185932838305081 0.194875859515025 0.198161631001335 0.198413703373934 0.196814907374289 0.18585942657537 3 3 + 14285221 14285661 14285383.545 14285208 14285685 + gene protein_coding_gene FALSE TRUE AT3G42090.1 contains domain LIN-9 RELATED (PTHR21689); contains domain ALWAYS EARLY (PTHR21689:SF2) 0.107099322701320 0.95567427921727 0.359987273743985 1 -0.167333723614984 0.863093617290931 0.107099322701320 0.127680380199334
AT4G01250_at 2.76022381524746 2.67459618848157 2.30025147321847 2.46030861004883 2.12733171266217 2.29011373323397 1.69172822030239 1.95174088111392 2.32988092344518 2.42222740076687 2.75557511048444 2.65917709597601 2.37873709665801 2.53462551406034 1.96663677356480 2.61801735240922 2.41400027035706 2.47942995507234 2.23839877335387 0.209853810966446 0.209816581808387 0.218977734448837 0.207863945110513 0.208629642142452 0.208199984628648 0.212869091155273 0.210108200032119 0.208207167554364 0.207011625249561 0.205256517431292 0.205714941719686 0.205568148010986 0.207096131808344 0.208688528498178 0.208999259000861 0.213830304910854 0.208629640340903 0.212061497696076 4 4 - 522878 523803 523167.909 522604 524216 - gene protein_coding_gene FALSE TRUE AT4G01250.1 WRKY22 (WRKY DNA-binding protein 22); transcription factor member of WRKY Transcription Factor; Group II-e Identical to WRKY transcription factor 22 (WRKY DNA-binding protein 22) (WRKY22) [Arabidopsis Thaliana] (GB:O04609); similar to WRKY27 (WRKY DNA-binding protein 27), transcription factor [Arabidopsis thaliana] (TAIR:AT5G52830.1); similar to WRKY transcription factor 22 [Capsella rubella] (GB:AAO23324.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.0852674847776683 0.955420196732624 0.360110035582214 1 -0.167559215204754 4.68500879358597 0.0852674847776683 0.061684933171766
AT2G46880_at 1.20219644072168 0.900099286783307 1.65861994736293 1.27860905995040 1.11920824099987 1.55230777664404 1.36949151825921 1.02494374305892 2.01625685898974 1.07123864950727 1.78849178388573 1.41103449384041 1.08590683047054 1.28840849942177 1.47110839723086 1.60068351270256 1.77666217655842 1.77967859038169 1.68072676706806 0.187238188343466 0.187427249671979 0.188242496859114 0.190752298937588 0.187033340217337 0.192360257889926 0.191860795400861 0.189172279569846 0.192992882310477 0.19324809930394 0.194134201228932 0.194573331802595 0.188034182482202 0.195347986771992 0.205590371208308 0.190635391041813 0.200152911524208 0.191991344929882 0.187033340217337 2 2|0 -|/ 19272117 19272580 19272381.9 19271642 19273515 - gene protein_coding_gene FALSE TRUE AT2G46880.1|AT2G46880.2 ATPAP14/PAP14; acid phosphatase/ protein serine/threonine phosphatase|ATPAP14/PAP14; protein serine/threonine phosphatase similar to ATPAP29/PAP29 (purple acid phosphatase 29), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G63140.1); similar to putative PTS protein [Cicer arietinum] (GB:CAB76911.1); contains InterPro domain Phosphoesterase At2g46880; (InterPro:IPR011230); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.106921434703336 0.95509006038401 0.360269588260489 1 -0.167852127996404 2.82051160709747 0.106921434703336 0.127399188439888
AT3G59870_at 6.81909323024676 6.86525434212983 6.40781522623291 6.2887833833486 7.25889620957401 6.69417969952499 7.57586903842334 7.0023397134603 6.94365390232002 6.8184895686153 6.89787841192871 7.12866700472035 6.80928101287047 7.1055463155831 7.37042946264314 6.85930426363753 6.51567012163027 7.29560725925457 6.69652416312341 0.194935805434637 0.188935206659865 0.180934024519779 0.192673146274393 0.187339724917143 0.187598040149538 0.179059332026186 0.183166486861692 0.200719422143119 0.181510330850630 0.188857507651110 0.179059332026186 0.192104553094881 0.18417416453429 0.189601746937889 0.179059332026186 0.183220771313042 0.191427054924730 0.179668055168890 3 3 - 22127345 22128368 22128022.818 22127138 22129218 - gene protein_coding_gene FALSE TRUE AT3G59870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43945.1); similar to Os01g0338600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042944.1); similar to hypothetical protein Tery_2745 [Trichodesmium erythraeum IMS101] (GB:YP_722402.1) -0.112489173940493 -0.954887186289968 0.360367661092952 1 -0.168032085772927 13.7727057851441 -0.112489173940493 0.141030531828717
AT4G39110_at 1.22857055936065 0.864955515663785 1.30398400342253 1.08581127206451 1.13471941311349 1.12334837008783 1.09351720817677 1.16408017463883 1.79764977180145 1.24218805718069 1.33198546335837 0.818106408654708 1.28647735968834 1.33253669540346 1.06087861525931 1.0638834333729 1.14883265757951 1.50223940106236 1.29340547917960 0.220593965460237 0.227720283142208 0.217976834027572 0.228743655058694 0.218988688876063 0.221442367424331 0.223023788815017 0.223137369363683 0.223032836109611 0.217998957847136 0.225682438566068 0.223424661887040 0.22038272564624 0.218325096689213 0.228275473388611 0.217976834027572 0.234016112160355 0.235215283025267 0.218156928321057 4 4 - 18222519 18222963 18222720.727 18222477 18225113 - gene protein_coding_gene FALSE TRUE AT4G39110.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G61350.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G21480.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAK63934.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98993.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0885560157722323 -0.954816248983522 0.360401957926065 1 -0.168095002603267 2.44363928474169 -0.0885560157722323 0.0744182690315875
AT2G32460_at 1.54415213354736 1.49068201405853 1.87794478393210 1.72872351207368 1.39869602367367 1.31374278179540 1.44259656457677 1.36349953013195 1.67458101865931 1.94823524757075 1.80610242798364 1.68007756584695 2.01354721205264 1.57097915353785 2.02708861752445 1.85845743219154 2.25040512392696 1.81053013776017 1.88842430365222 0.204432669673263 0.209568415693327 0.213000012400258 0.204451502603716 0.210322283905654 0.203313782631367 0.208414446717127 0.213128883926953 0.223390226944832 0.205729792873244 0.208131028851364 0.217484291638785 0.203313782631367 0.203313782631367 0.217533499358679 0.207691281933476 0.210710061481977 0.215083065950265 0.210181365314947 2 2 - 13789538 13790253 13789925.636 13789285 13791548 - gene protein_coding_gene FALSE TRUE AT2G32460.1|AT2G32460.2 AtM1/AtMYB101/MYB101 (myb domain protein 101); DNA binding / transcription factor|AtM1/AtMYB101/MYB101 (myb domain protein 101) Member of the R2R3 factor gene family. similar to ATMYB33/MYB33 (myb domain protein 33) [Arabidopsis thaliana] (TAIR:AT5G06100.3); similar to protein 3 [Petunia x hybrida] (GB:CAA78388.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0798062418411634 0.954478029232158 0.360565512899779 1 -0.168394928217589 3.37711899238057 0.0798062418411634 0.0339995983391189
AT1G43810_at 1.64522288621391 1.41933092962074 1.59377439391730 1.54126670802198 1.40909819387932 1.23659911832538 1.60232429020001 1.60187689266410 1.65851790737137 2.16198713758859 1.43126755270572 1.70834428739164 2.03176389403351 1.64043370260897 1.56337820446178 1.46962259195132 1.97378018931354 1.60457111968485 1.34262018497709 0.244035740461108 0.250627966158239 0.251708521611033 0.246670698727638 0.240923448298208 0.236538396837194 0.236695522999242 0.236056394618783 0.238796567946602 0.246160433916015 0.244413178722753 0.239950361450623 0.236056394618783 0.24533433531649 0.245944231976143 0.239615958596751 0.244317338465893 0.245682352009891 0.240498197381872 1 1 - 16582896 16583200 16583060.364 16582887 16583240 - gene protein_coding_gene FALSE TRUE AT1G43810.1 unknown protein -0.0825753483410662 -0.954401844644667 0.360602361284359 1 -0.168462474763447 3.20565514464597 -0.0825753483410662 0.0500185952446578
AT1G22200_at 7.59263845300524 7.83649936724765 8.10918028987847 8.16887759819732 8.47298223038184 7.67934957938272 8.59778727589005 8.08313503361603 6.04962317775789 7.30409989739626 7.13548647111543 7.10038306781088 7.23267774775025 6.90693339360607 7.00590209068993 7.24569104532267 6.4345240889865 6.92366654699675 7.1320036838774 0.210963782531988 0.215102030386517 0.214410746523613 0.21483372379687 0.210765942098344 0.211163028282175 0.213897139886225 0.211541253011573 0.242157205173521 0.21937705360645 0.220265756211088 0.210592313231271 0.213450972547466 0.222071575674855 0.228837850137294 0.213714248023028 0.224116744642911 0.21190243768094 0.215631410494372 1 1|0 -|/ 7838061 7839082 7838620.889 7837580 7840777 - gene protein_coding_gene FALSE TRUE AT1G22200.1|AT1G22200.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36050.1); similar to Serolo (GB:ABF95668.1); similar to Os04g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052965.1); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) 0.124832431105654 0.954335651189744 0.360634379425346 1 -0.168521159353541 14.9809230498892 0.124832431105654 0.169359575998513
AT3G46290_at 6.41367179614615 7.07059440968162 7.02037121330336 6.79125660643495 7.47309485023387 7.11990836512616 8.08201701386423 8.34812880434021 7.7360977439643 6.8786383147687 8.19367488581501 7.38755887822815 8.28884018140121 8.42230934587106 7.25290926324897 7.43605208524716 7.3766324170549 7.95762156064245 6.9426115216986 0.177739613596485 0.180199245730687 0.178068885042252 0.1868964909454 0.177245862127218 0.175861353203908 0.180606841764001 0.181142086681296 0.189215282279250 0.180711541750132 0.179756297156058 0.179035157088808 0.186482904711559 0.186974835423711 0.175948302124084 0.178212055911378 0.192730819578024 0.178151213965009 0.186805898935357 3 3 + 17025888 17026389 17026138.818 17023994 17026772 + gene protein_coding_gene FALSE TRUE AT3G46290.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39110.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT07653.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAN64488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.113111026572307 0.954332749772473 0.360635782903581 1 -0.168523731561719 14.7774965593909 0.113111026572307 0.142662238764400
AT1G63950_at 2.44969446127008 2.51795816685158 2.05024871951437 2.51549341765969 2.15031507678595 2.28626366037764 2.01430751852753 2.46728244980135 2.67695690622376 2.81195409357087 2.71966656567479 2.09565987375158 2.40272183403926 2.41833584038256 2.53736472261738 2.26394234072454 3.00415591374141 2.29826268136973 2.19145340001816 0.213218729126220 0.206652497462798 0.202789606369530 0.205618163389480 0.211364397632148 0.204816485168262 0.210019374672448 0.204211971535241 0.206576914469334 0.203658615740211 0.211640915322186 0.21379925250536 0.208862328521025 0.211766690284338 0.202789606369530 0.205247727467699 0.203947841323546 0.209405215846928 0.20652155234864 1 1|0 +|/ 23738663 23739191 23739044.125 23738660 23739219 + gene protein_coding_gene FALSE TRUE AT1G63950.1 heavy-metal-associated domain-containing protein similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT1G01490.2); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.102169087797416 -0.954278745617446 0.360661906595141 1 -0.168571606949619 4.82026302791948 -0.102169087797416 0.115413432414195
AT2G15560_at 5.62918213016912 6.05510748413931 5.37649164235276 6.0983804311928 6.72231367917971 5.39631039300883 5.87040911678738 6.0084238149207 4.67603193413712 4.07926055599419 4.95253921193089 5.17456326956455 5.07554892800905 4.04312540599444 5.11945274358477 4.99506795206615 4.02036491702232 4.97161989882133 4.59606138124269 0.484102825296346 0.491698959167042 0.45778636448247 0.45778636448247 0.45778636448247 0.504332428873276 0.45778636448247 0.45778636448247 0.487607573879219 0.494272513502517 0.485589977540183 0.45778636448247 0.475817155876824 0.45778636448247 0.45778636448247 0.45778636448247 0.476637096748133 0.471908489430886 0.490998003843249 2 2 - 6795635 6795758 6795714 6794951 6797183 - gene protein_coding_gene FALSE TRUE AT2G15560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62200.1); similar to EDA32 (embryo sac development arrest 32) [Arabidopsis thaliana] (TAIR:AT3G62210.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to Protein of unknown function DUF537 [Medicago truncatula] (GB:ABE81607.1); similar to Os08g0230500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061299.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.175588700172793 0.954127573434222 0.360735041061199 1 -0.168705611053804 10.5168206271349 0.175588700172793 0.272519537373538
AT4G37160_at 0.90651922991103 1.08343687989336 0.989658434338052 0.700219390231169 0.810192030393216 1.16672894408146 0.836432153626697 1.00258604289919 1.40970541919267 1.27589832946532 1.10876222912957 0.743488220840337 0.800073957429738 1.01004811966488 1.2906508741377 0.949136002882105 1.04430687585969 0.971451739856485 0.720854224916604 0.188068557741955 0.189943814625413 0.192229121394907 0.198470341499581 0.196483181926339 0.191908009989703 0.192052251337179 0.190454652713354 0.194152723254354 0.200155875724144 0.195679793010706 0.189321866563750 0.188068557741955 0.191784924473801 0.194902617998073 0.192911473441230 0.192059166505568 0.199639798961015 0.190787449212548 4 4|0 -|/ 17494864 17495530 17495286.6 17494699 17497118 - gene protein_coding_gene FALSE TRUE AT4G37160.1 SKS15 (SKU5 Similar 15); copper ion binding similar to SKS16 (SKU5 Similar 16), copper ion binding / pectinesterase [Arabidopsis thaliana] (TAIR:AT2G23630.1); similar to SKS17 (SKU5 Similar 17), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G66920.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); similar to Os07g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058771.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.0931450577690315 -0.953824456127819 0.360881715953425 1 -0.168974251105197 1.99958451000507 -0.0931450577690315 0.0898886139437264
AT2G33630_at 8.14446357398497 8.327859115607 8.31043025388479 8.27363429779 8.50210922753066 7.93533618206999 7.74882923054368 7.4253067455196 7.23458926949539 7.50519828248276 7.39806638471386 7.60908097771341 6.91105420019365 7.20977653753247 7.37372190570052 7.06561719108208 7.51830265059172 7.46444468897281 7.63043865978488 0.209831871324914 0.211405154217807 0.202905555282069 0.207872872247628 0.206896192600392 0.214753550292839 0.205055300357778 0.201744952827932 0.229828986704216 0.203796017188625 0.206274574690227 0.210397558158368 0.202022287027682 0.206262802123765 0.207904192728952 0.201887659357105 0.227256122079236 0.218219283061075 0.20898807073296 2 2 - 14244063 14244665 14244375.2 14243909 14245868 - gene protein_coding_gene FALSE TRUE AT2G33630.1 3-beta hydroxysteroid dehydrogenase/isomerase family protein similar to AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1), 3-beta-hydroxy-delta5-steroid dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G47290.2); similar to Os02g0715200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047924.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF93262.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225) 0.102889410189965 0.953659332365737 0.360961635377720 1 -0.169120563373329 15.4712461471915 0.102889410189965 0.117484407544327
AT1G53940_at 1.98998369396479 1.95940798677258 1.75685479968167 1.85962632148742 1.69152040101795 1.59557916538714 1.69669213106712 2.07029199880367 2.3776499720106 2.01766596363315 1.84427730730748 2.27672478279893 1.66891178176729 2.44444130859559 2.36314768749478 1.89654578885216 2.24811130036017 2.20979026520874 1.87411647278100 0.165375843622983 0.165848251484992 0.163824137968951 0.169340000447004 0.165664359630789 0.175081468181300 0.165129342289402 0.163322850841291 0.166303543379607 0.175022945127073 0.169319758721608 0.169132379329525 0.166213525200925 0.166302568271181 0.169963294023276 0.164269008802272 0.187406184298211 0.166447609359642 0.179043059604455 1 1 + 20147937 20149421 20148538.273 20146947 20149448 + gene protein_coding_gene FALSE TRUE AT1G53940.1 GLIP2 (GDSL-motif lipase 2); carboxylic ester hydrolase Contains lipase signature motif and GDSL domain. similar to GLIP1 (GDSL LIPASE1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT5G40990.1); similar to lipase SIL1 [Brassica rapa subsp. pekinensis] (GB:AAM47031.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) -0.0870079028843027 -0.953279021658146 0.361145752906897 1 -0.169457467376507 3.93189685257599 -0.0870079028843027 0.0692820713277253
AT2G24630_at 2.07759540872288 2.21365144575922 1.88085940536796 1.65984092310579 2.38611382760596 2.25751100943702 2.96640902296517 2.50762120131161 2.82253571472446 1.86360154462592 3.39645799524814 3.24776600813862 2.88407309603047 3.30347059187276 3.20830639151661 3.00184236986364 2.42112479653327 3.39373620862443 2.88312813495869 0.201926268705624 0.197498162846223 0.205914894129492 0.197498162846223 0.202010809877782 0.205021110793861 0.199654730674852 0.202106724048147 0.225760531774201 0.200267845661131 0.202161795461796 0.197498162846223 0.203416837103767 0.202565445569174 0.199501671374638 0.200615894469634 0.199787650635312 0.201758017673331 0.212318350605111 2 2 - 10478676 10479168 10478946.364 10478382 10481582 - gene protein_coding_gene FALSE TRUE AT2G24630.1 ATCSLC08 (Cellulose synthase-like C8); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC04 (Cellulose synthase-like C4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G28180.1); similar to ATCSLC05 (Cellulose synthase-like C5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G31590.1); similar to putative glucosyltransferase [Cicer arietinum] (GB:CAB88664.1); similar to TPA: TPA_exp: cellulose synthase-like C3 [Oryza sativa (japonica cultivar-group)] (GB:DAA01751.1); similar to TPA: TPA_exp: cellulose synthase-like C2 [Oryza sativa (indica cultivar-group)] (GB:DAA01750.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.0943853695741327 0.953094923213861 0.361234903543079 1 -0.169620513524969 5.05879310403354 0.0943853695741327 0.0938947728818675
AT2G28490_at 0.548475341491796 0.831598035046586 1.13746553475524 1.06109520861057 1.01574453985133 1.34506769142606 0.958316101208326 1.05813883664306 1.25171236077460 0.874406630500382 1.15832876489232 0.47199805088806 1.12897411703539 1.06083559615345 0.888413912334752 0.472578037050635 1.20807028376441 0.819230422713866 0.912360337820067 0.213941882650158 0.212676597442258 0.218191652671171 0.213805629610623 0.212688752645204 0.220290029803131 0.212805567137520 0.216478491613963 0.212753349250799 0.212676597442258 0.215275890144359 0.212788695151889 0.218869922206049 0.216463784873585 0.218390942142446 0.218750951113448 0.216900260899622 0.227394343497102 0.213056701671097 2 2 - 12185944 12186586 12186178.545 12185674 12188089 - gene protein_coding_gene FALSE TRUE AT2G28490.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to probable major protein body membrane protein MP27 / major protein body protein MP32 precursor - cucurbit (GB:T10443); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.0894691850678915 0.95285393941917 0.361351625033726 1 -0.169833900301594 1.95142770669702 0.0894691850678915 0.078240844685896
AT2G38580_at 4.41210786000638 4.85125079798289 5.13743545378328 4.64492296152804 4.21304315812737 4.48787958874258 3.96608822671018 4.08100242292252 4.75639456671327 4.43783851068171 4.55311607740431 4.56991796423514 4.06338798780859 4.31391330609465 4.54001355283242 4.38471010965007 4.19801608576149 4.68181984491842 4.29006862149075 0.207007063593540 0.202452465838617 0.218064637141238 0.207315815520551 0.209285661882130 0.203597321562507 0.204251520829878 0.204352299446636 0.201018878082621 0.199087615548457 0.205852299490709 0.199286290088503 0.208730212291409 0.21012655518377 0.208619561817859 0.198836292564183 0.202453938435188 0.203794490146907 0.206322215756580 2 0|2 /|+ 16148778 16149415 16149179.3 16145648 16149666 + gene protein_coding_gene FALSE TRUE AT2G38580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65010.1); similar to PREDICTED: similar to myosin XVIIIa [Rattus norve (GB:XP_001080824.1); similar to Os03g0333000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050020.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.105776298383026 0.952337448224005 0.361601880661249 1 -0.170291092289939 8.92815585825043 0.105776298383026 0.125289115934316
AT3G63220_at 5.53588041453151 5.7359140111221 4.97036657588914 5.262706077136 4.64467812145815 5.40699511246376 4.1927176933814 5.00043265068665 4.1690119736561 4.55185441572544 4.92033620291043 4.81073563153114 5.33589805870707 4.7815815795209 4.76050817486908 4.70487132984249 5.19815134974026 4.35266258743106 4.88022463664781 0.18893449850667 0.191626797397091 0.198653824850768 0.193190278269347 0.191120523101616 0.200487912173598 0.186765542553014 0.196909366528033 0.193240865052490 0.189387924217970 0.194215624066995 0.189497625930465 0.188268799465382 0.206785521945001 0.195177540705034 0.187293597796393 0.192002638643778 0.190614469859606 0.187404550535989 3 3 - 23368521 23369046 23368813.636 23368367 23370213 - gene protein_coding_gene FALSE TRUE AT3G63220.1|AT3G63220.2 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G16250.1); similar to Os10g0388200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064494.1); similar to Putative protein [Oryza sativa (japonica cultivar-group)] (GB:AAK13101.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.139673192474473 0.951953228821072 0.361788127093921 1 -0.170631064706782 9.78960639358134 0.139673192474473 0.201740954038888
AT3G29420_at 1.87961693128409 1.07459879365325 1.93515237127883 1.97299460792270 1.79911782060633 1.82339612336219 1.91107496785045 1.26746403373675 1.96138303395969 2.40219396651824 1.9542819603634 1.69938030621406 1.95250142761961 1.98359953829325 1.78463222142168 1.68774602773370 1.73633019720284 2.26537436970040 1.56156274035195 0.175792798500878 0.182892444661929 0.178841648113575 0.183245969378765 0.175792798500878 0.185733617378237 0.179160649728419 0.183546475296332 0.177625204675781 0.180439258061314 0.180762193785783 0.182088975287416 0.175792798500878 0.18038811241652 0.176531221631492 0.175792798500878 0.196887343719267 0.176769524755736 0.191308081824927 3 0|3 /|+ 11309177 11309259 11309237.429 11308244 11309315 + gene protein_coding_gene FALSE TRUE AT3G29420.1 geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related similar to GGPS3 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 3), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT3G14550.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q94ID7) 0.128705362476685 0.951853847634988 0.361836312288219 1 -0.170718982453346 3.63694062438445 0.128705362476685 0.178532597497458
AT2G41490_at 8.04608924604008 8.28123988120096 8.42102432979306 7.71444600702103 8.27138539599474 8.0309848259866 7.30044716645352 7.39247173116858 6.67415710865583 6.85108963233482 6.46940952861505 6.33549637746528 6.58044817418295 6.3743790385037 6.27956977904024 6.66532869536537 7.36724172216433 7.1777293056799 6.84550026048982 0.270007298377725 0.265996651424481 0.248592560754837 0.285195194719105 0.26454083966704 0.251513447723275 0.247444029809554 0.246164762474371 0.285994611167430 0.256196196992484 0.272709939475456 0.246164762474371 0.253377854859730 0.256511325697171 0.255519493280825 0.246164762474371 0.267482136414266 0.246164762474371 0.25934950826026 2 2|0 +|/ 17309902 17311078 17310369.6 17308773 17311289 + gene protein_coding_gene FALSE TRUE AT2G41490.1 GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE); UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase similar to UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative [Arabidopsis thaliana] (TAIR:AT3G57220.1); similar to Glycosyltransferase (ISS) [Ostreococcus tauri] (GB:CAL56387.1); similar to Os07g0661100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060535.1); contains InterPro domain Glycosyl transferase, family 4; (InterPro:IPR000715) 0.110174730308341 0.951741078351086 0.361890994297079 1 -0.170818734730219 14.6554857370176 0.110174730308341 0.136352327524427
AT2G19000_at 1.26956319168749 1.1856239077845 1.10234559383698 1.18751866322523 1.15419477015926 1.18740454078772 1.25894487839528 1.06425529515332 1.98672766586954 1.28867459222533 1.60789831841217 1.19396522296348 1.36939417125993 2.06798240575906 1.37086657308531 1.34832592019862 1.28228530927161 1.42942177023019 1.4735859673527 0.174267557357063 0.174176153512313 0.180360466972868 0.173910775146142 0.174034303517446 0.172762172378505 0.181592888508216 0.172399146385513 0.179919235277712 0.180652055810134 0.179006654492384 0.173030921322125 0.186333707153024 0.174114842674840 0.180968789687036 0.173723267137365 0.177851548831289 0.174559003191828 0.175687513548602 2 2 + 8248299 8248624 8248463.091 8248186 8248866 + gene protein_coding_gene FALSE TRUE AT2G19000.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G21620.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99958.1); contains InterPro domain Whey acidic protein, core region; (InterPro:IPR008197) -0.0804797700022501 -0.951576741936155 0.361970691884096 1 -0.170964084066654 2.69711312340209 -0.0804797700022501 0.0399554616925793
AT3G22960_at 9.54205946438593 9.62241597545864 9.11061300692006 8.96947081287979 9.72687864581144 9.407967793372 9.7425214769397 9.71088115138827 9.56931833656042 9.64350753160334 9.94705022541544 9.8727916833817 9.67589671445044 9.8933207190549 10.0595098702058 9.6901862921716 9.41292045546257 9.94087920708696 9.67988535091948 0.109639947066826 0.106143318515815 0.117439720111432 0.120975352603695 0.112516307384751 0.119243488406441 0.109639613823114 0.116971509318468 0.11908242113211 0.108487989833682 0.108209752388395 0.108263308700087 0.108223631090159 0.110061473190273 0.114574965387809 0.106844410792866 0.112548691267872 0.110121011872087 0.106899574933976 3 3 + 8141103 8141725 8141400.727 8139242 8141992 + gene protein_coding_gene FALSE TRUE AT3G22960.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G52920.1); similar to Pyruvate kinase isozyme A, chloroplast precursor (GB:Q40545); similar to Pyruvate kinase isozyme A, chloroplast precursor (GB:Q43117); similar to ATP:pyruvate phosphotransferase (GB:AAA33871.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -0.0850356480440193 -0.951489449993654 0.362013030624592 1 -0.171041281968031 19.2003376086935 -0.0850356480440193 0.0621754195316497
AT1G58470_at 2.36133742512438 2.77337189852121 2.53710601634161 2.82167616981818 3.07206057652644 2.59820266353462 2.62701809055289 2.69616851211516 2.62140658363882 2.68009246693444 2.26489363632838 2.31902572512074 2.39416886097776 2.48382836442931 2.18817841100761 2.23986446514707 2.56198628730034 2.31142426680529 2.78439869194369 0.191871944786102 0.191948221929368 0.188401078360128 0.188540918638118 0.186540351565032 0.185644395138788 0.186387102674897 0.186322946195510 0.185644395138788 0.185644395138788 0.185817359492691 0.188034380740323 0.193995964667893 0.185644395138788 0.186033003476012 0.188377413945152 0.191560560353957 0.201196765821553 0.185644395138788 1 1 + 21731739 21732131 21731899.545 21730689 21732425 + gene protein_coding_gene FALSE TRUE AT1G58470.1 ATRBP1 (RNA-BINDING PROTEIN 1); RNA binding encodes an RNA-binding protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G26650.2); similar to RNA-binding protein, putative [Musa acuminata] (GB:ABF70162.1); similar to Os10g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064824.1); similar to Os07g0584500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060120.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.103545310194642 -0.951146259775481 0.362179520692334 1 -0.171344729950396 5.20622791888942 -0.103545310194642 0.119905239747713
AT3G27800_at 1.58799449694802 1.17986649482423 1.50104667725074 1.27908319049526 1.08761108861771 1.39006599725345 1.56448943078890 1.21813596803495 1.15965397829180 1.49976558578684 1.0677704415132 1.14861505056711 1.66612068875523 1.64587062146078 1.10846362734387 0.976285947778191 1.36972320780521 1.56108334822308 1.68072894919949 0.190267159629901 0.189752577608317 0.190910925573200 0.189036816115548 0.189036816115548 0.197796262530169 0.189036816115548 0.189036816115548 0.193023195010345 0.196581563442327 0.194030182607264 0.189036816115548 0.189036816115548 0.193625452387624 0.200707126831082 0.194840215613404 0.209276046687539 0.202604294252314 0.197357536684668 3 3|0 -|/ 10303184 10303412 10303273.333 10303165 10303438 - gene protein_coding_gene FALSE TRUE AT3G27800.1 similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT4G05360.1); contains domain SCC1 / RAD21 FAMILY MEMBER (PTHR12585); contains domain SISTER CHROMATID COHESION 1 FAMILY MEMBER (PTHR12585:SF1) -0.100947206828305 -0.9508933264285 0.362302259992015 1 -0.171568314544644 2.73339056191343 -0.100947206828305 0.113119514227390
AT1G59890_at 4.81526615659227 4.86351548085461 5.00887157086564 5.23368762081802 4.95601154460991 4.93750570782842 4.66995049138717 4.81477799930139 4.53665299539048 5.05583593919425 4.76278342152852 5.08198335271397 4.99264504327944 4.82903403825941 4.8602444408518 5.00262470664167 5.14257997768780 4.3325477050409 5.27338026447222 0.211035663472117 0.206475285163305 0.210143442861307 0.208116578323574 0.213528760972121 0.214153192099573 0.207240272257753 0.205891395876865 0.220448959761722 0.207138838685829 0.210123588745703 0.207975256247428 0.217936005475521 0.208204674519229 0.227110692249759 0.203429685628284 0.210454180685667 0.207441029168408 0.218830568643370 1 1|0 +|/ 22053568 22054302 22054002.444 22047495 22054726 + gene protein_coding_gene FALSE TRUE AT1G59890.1 paired amphipathic helix repeat-containing protein similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G10450.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE90181.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.0817035908640452 0.950888310465228 0.362304694356459 1 -0.171572747986078 9.82787085591689 0.0817035908640452 0.0471356325453599
AT1G67000_at 1.52082450042357 2.05298741133728 1.52069342653219 1.75266021962501 1.46388222572992 1.4329017443881 1.24223675053761 0.767460436325935 1.23690133915252 1.42653749982032 1.07106506698413 0.98262034961294 1.38310294678581 0.927774018089037 1.24814234786323 1.17741078150545 1.42141385868483 1.32592116675017 1.99767491412952 0.181146674086312 0.190385719728485 0.182670845187431 0.180545066205312 0.178679299195970 0.180306367155860 0.18254194113207 0.176806349719905 0.185163292956046 0.179130302325037 0.175577824456033 0.183927807006609 0.178619356547693 0.182172093543584 0.187626406912404 0.179931849664583 0.179882103525818 0.185401164399928 0.188599548222206 1 1 - 25007898 25008412 25008092.273 25007772 25011310 - gene protein_coding_gene FALSE TRUE AT1G67000.1 kinase similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66930.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G66910.1); similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G38260.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95895.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.107433068960148 -0.950757610909058 0.362368130038123 1 -0.171688262052736 2.8421487900634 -0.107433068960148 0.129892287102631
AT3G03260_at 0.94426672010519 1.10114034564720 1.29265166336805 1.39447022510137 0.819261997427726 1.13605498038422 1.16902729064592 1.52997436207059 1.04397616562756 1.20136362385189 1.02680134374530 1.09504179491568 1.20967876076818 0.795317386524229 0.88141584341937 0.894244295378895 1.58741108846136 0.961713286716163 1.40315776554949 0.222312099153593 0.220974712233046 0.218568543588312 0.233246836613322 0.21862108503786 0.218568543588312 0.232780058237032 0.219813863271206 0.231358212369413 0.226573472181019 0.220531434002111 0.218680793875321 0.223268813446695 0.228790204916831 0.227829854314912 0.218568543588312 0.222134248340127 0.225905502719361 0.227294961573021 3 3 - 755404 756101 755705.636 755166 759289 - gene protein_coding_gene FALSE TRUE AT3G03260.1 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17320.1); similar to homeodomain protein HOX3 [Gossypium hirsutum] (GB:AAU12247.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.0926026698660266 -0.950568532222626 0.362459914387063 1 -0.171855348943640 2.30966536142751 -0.0926026698660266 0.0891889784351521
AT3G60830_at 5.80904331567499 6.45818848313036 5.76132094930967 6.15319218959249 5.71014302822114 5.99453096258919 5.22046889601401 6.04559843890648 5.62030778620869 5.26029808209193 5.44441868784023 5.81376211152687 6.00890430620337 5.68431140301356 5.86848036645555 5.76611804324069 5.76188840198145 5.03382090854283 5.36994288975439 0.210756280411617 0.214040376008421 0.219910488587970 0.218569136829338 0.210756280411617 0.225005782704654 0.211268596879487 0.217347021999714 0.253032400041950 0.22714097652687 0.216327915378502 0.219150805522299 0.214524369961374 0.22895156811965 0.221856276488161 0.210756280411617 0.214822635408564 0.212599649049774 0.214217283049487 3 3 + 22486273 22486937 22486657.455 22485049 22487420 + gene protein_coding_gene FALSE TRUE AT3G60830.1 ATARP7 (ACTIN-RELATED PROTEIN 7); structural constituent of cytoskeleton Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to Actin/actin-like [Medicago truncatula] (GB:ABE93682.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.138667720789444 0.950545439153065 0.362471125581221 1 -0.171875754150958 11.4388420902392 0.138667720789444 0.200076023554528
AT3G31320_at 0.993936114802607 0.94697428314095 0.279166882221867 0.910285070937738 0.915481320181813 1.11468439950976 0.544832252159435 1.04745142165895 1.51682729752889 1.06148172895662 1.24458271789498 0.824347334916622 1.15263127456648 0.851938781621155 1.18026933665509 0.871795443980423 1.01772496115192 1.22334511244864 1.00342063763805 0.224505066706260 0.221595209268757 0.240817902422372 0.223892643042649 0.233444536765435 0.227377331124487 0.225301710095114 0.221595209268757 0.227606420600667 0.222755122514742 0.22511597740788 0.222312132457625 0.221595209268757 0.232989664134227 0.223039289490813 0.221595209268757 0.225438603465252 0.221595209268757 0.229569313271846 3 3|0 +|/ 12697687 12698397 12698070.333 12697106 12698481 + gene protein_coding_gene FALSE TRUE AT3G31320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40133.1); similar to hypothetical protein 31.t00084 [Brassica oleracea] (GB:ABD65102.1) -0.113237308682232 -0.950484823790373 0.36250055423107 1 -0.171929312365906 1.96397109729944 -0.113237308682232 0.144043812041829
AT2G34900_at 3.86062907462706 4.41689780608238 3.88487509646487 3.92662649936757 4.08130826355514 4.06258508755116 3.92035922747634 3.78569755135365 3.07741557382113 3.13149461920603 2.98375634049865 2.93905800912829 3.31941097289898 2.97139379600415 3.24175056685622 3.16564293931116 2.86802501374758 3.50868840968036 3.71985819303444 0.201534179077936 0.19529455445208 0.19529455445208 0.205258820970502 0.206849462111386 0.200502150252014 0.202624237585092 0.197448183146160 0.200651637520921 0.198707546325888 0.203751534135711 0.204452691706603 0.197396093069462 0.19593288276495 0.198007891425931 0.19529455445208 0.201587883849977 0.198979845509155 0.19529455445208 2 2|0 -|/ 14730445 14731271 14730774.778 14730092 14732729 - gene protein_coding_gene FALSE TRUE AT2G34900.1|AT2G34900.2 IMB1 (IMBIBITION-INDUCIBLE 1); DNA binding Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination. similar to GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6), DNA binding [Arabidopsis thaliana] (TAIR:AT3G52280.1); similar to DNA-binding bromodomain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68656.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) -0.0959604420775187 -0.95036479382300 0.362558833608931 1 -0.172035359423731 7.20952493482788 -0.0959604420775187 0.099361472665696
AT4G35820_at 0.590429613181069 0.646213667211947 0.538828006478264 0.67577095895778 0.755696173148526 0.732707365195458 0.382932424567826 0.460037269149078 0.908040942135988 0.518936273691124 0.644469330995142 0.439534068826472 1.11497569013833 0.618066159728129 0.595367039087846 0.662065425548125 1.10938069432320 0.451752480097945 0.68114826296427 0.188526456790296 0.196107079229209 0.193790672709245 0.193542875177443 0.195964027671132 0.194976013153440 0.189291238291192 0.195275290731477 0.199793755040717 0.19383144567452 0.197533826274153 0.190094832229666 0.19812535297731 0.190588837416406 0.196367352397673 0.193530375620224 0.203886374544539 0.199308600677654 0.199775495607874 4 4|0 +|/ 16971456 16972367 16971900.5 16971225 16972433 + gene protein_coding_gene FALSE TRUE AT4G35820.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G35810.1); similar to Os10g0497800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064962.1); similar to putative prolyl 4-hydroxylase, alpha subunit [Oryza sativa (japonica cultivar-group)] (GB:AAL58274.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.078795125290107 0.95009208673549 0.362691268785833 1 -0.172276255900644 1.30140686174805 0.078795125290107 0.0291322892152515
AT4G26890_at 1.22497338684668 1.10278101987436 1.03063251582705 0.790796128348755 0.930584179301444 1.124888684873 1.29151754198741 1.13833703926963 0.994157621135915 1.94232325838846 1.35903184875925 1.22294446308351 1.87645894666381 1.62121466925589 1.46904450258547 1.29857702466331 1.70138304490964 1.71729579063865 1.51343903090069 0.183594746739253 0.179790756711514 0.190594188754683 0.178702365122894 0.189517557123201 0.184604410238510 0.186263868006084 0.180086412078915 0.195108681493533 0.181691917291267 0.188269143072019 0.187157115932001 0.182613136151976 0.181090198355858 0.179378086064688 0.183970691434221 0.183882508903706 0.178596390607417 0.185679614750761 4 4 + 13512874 13513254 13513070.455 13511845 13513412 + gene protein_coding_gene FALSE TRUE AT4G26890.1 MAPKKK16 (Mitogen-activated protein kinase kinase kinase 16); kinase member of MEKK subfamily similar to MAPKKK15 (Mitogen-activated protein kinase kinase kinase 15), kinase [Arabidopsis thaliana] (TAIR:AT5G55090.1); similar to Os02g0322400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046691.1); similar to protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15943.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.085119860197686 -0.94943477361045 0.363010623018024 1 -0.172856657826393 2.58758902360519 -0.085119860197686 0.0632705872279463
AT3G44770_at 0.605161344492805 0.853952877467072 0.873842732816602 0.828675295804209 1.19591602664011 0.820938620238668 1.27173626077303 0.839333036793142 0.921065304379323 0.875350206602168 1.06477391684861 1.10682342066808 1.04274681906986 1.03927391126884 1.20442869115852 1.19577881157669 1.48087076942758 1.14127514036191 1.20020818276946 0.208449393970721 0.206293216457799 0.206380789504262 0.206869849621819 0.204227858897671 0.214206438018207 0.209769080105739 0.222018402757356 0.213525956673553 0.208777908165259 0.209925997643119 0.216050601810868 0.204227858897671 0.208302639003141 0.215037298698343 0.210750200307124 0.207335195423169 0.215164751949276 0.219679666799044 3 3 + 16328735 16330395 16329841.364 16327067 16330445 + gene protein_coding_gene FALSE TRUE AT3G44770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29550.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) 0.098959579728624 0.948890228211803 0.363275341538703 1 -0.173337232746733 1.99038002419379 0.098959579728624 0.108282714554257
AT1G52740_at 10.7267269962931 10.9609557702403 10.6848023095658 10.7556179075632 11.2268053720525 10.9731300174618 10.2456666877033 10.6272529416635 10.6258217178287 10.6285190655783 10.9772254821561 10.7014644982085 10.8041080797024 10.5864169906880 10.7183030587745 10.7100818916028 10.3343910022940 10.4199841754140 10.9689868986669 0.080412366195152 0.082208036782867 0.0816858297470141 0.0829128512005486 0.0809599590619948 0.0873981756580392 0.0828455019324328 0.0857604810081858 0.094897395340392 0.080412366195152 0.0821640774279329 0.080412366195152 0.0821461210315888 0.0872366461766466 0.0809044882424022 0.0816639034748582 0.0957787297776205 0.0854488534757152 0.080412366195152 1 1|0 +|/ 19649107 19649856 19649611.7 19648936 19650150 + gene protein_coding_gene FALSE TRUE AT1G52740.1 histone H2A, putative Identical to Probable histone H2A variant 3 (H2A.F/Z 3) (HTA9) [Arabidopsis Thaliana] (GB:Q9C944); similar to histone H2A.F/Z [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to putative histone H2A [Pinus pinaster] (GB:CAC84677.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0926629863414243 0.948867833842387 0.363286231012417 1 -0.173356991407599 21.4739228126745 0.0926629863414243 0.089894730902826
AT1G29950_at 6.45763179242543 6.07050681989603 6.35624311460518 5.97065914029575 7.01716823662397 6.25419178950989 7.40598218309971 6.84259635965773 4.78633980806493 5.45335777139089 6.21913943853854 6.14968317796889 6.18319350550563 6.02671682268898 5.64686783823735 6.53488701912643 6.56667479600906 5.61397606964117 6.42989662682474 0.211180529814273 0.198732181916596 0.201592718844953 0.204820634065259 0.198732181916596 0.210313605956778 0.198732181916596 0.198732181916596 0.225077111100364 0.217118013582451 0.207236070118178 0.198732181916596 0.203351149377516 0.213804549604089 0.210837908617695 0.198732181916596 0.217587005780428 0.211387130631206 0.208859370583989 1 1 + 10493602 10494168 10493857.545 10491682 10494582 + gene protein_coding_gene FALSE TRUE AT1G29950.1|AT1G29950.2 transcription factor/ transcription regulator| similar to transcription factor/ transcription regulator [Arabidopsis thaliana] (TAIR:AT5G50010.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE90109.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.133248606429978 0.948013508677958 0.363701828955501 1 -0.174110475748721 12.3839592972932 0.133248606429978 0.189419961596191
AT2G01510_at 0.907241850124828 1.54172563324597 0.826386353866813 1.20998844315326 0.900132277944452 1.15152501525761 0.640882954163656 1.2792518797834 1.50920418071663 0.736752379315621 0.454508601835631 0.67176003848347 0.798510945116416 0.881354938476007 1.35230452088489 1.15957953790811 0.855674473921238 1.08806714962948 1.02520852086215 0.194501105460558 0.192704580663268 0.205062417136262 0.200825270318669 0.194572317465952 0.196596088337244 0.203604229753901 0.197840639456811 0.207162640545630 0.200430296329524 0.196876086942203 0.193833712706140 0.194533978859710 0.193583968091316 0.198715867802204 0.200717212813670 0.198837875930129 0.19666186482949 0.195575820149031 2 2 - 230764 231321 230976.909 230751 232505 - gene protein_coding_gene FALSE TRUE AT2G01510.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.126467945645080 -0.947912745672265 0.363750868862763 1 -0.174199307744131 2.05619599398252 -0.126467945645080 0.174813773059305
ATCG00690_at 9.32388599601442 10.4747027829585 9.8835086181021 10.4327591354043 9.80282150334194 9.7597471723313 10.0914300954004 10.4812671834801 10.7606883733658 10.7598676015176 11.4341405762094 11.5306872589597 11.0994914112815 11.0944655223907 10.7868752633845 11.4023237730515 10.6655802640354 11.1443547337994 10.6252109469403 0.149508969701490 0.126633875748806 0.137532636394331 0.128353616685169 0.126374932345517 0.131487327963566 0.130435385664402 0.126374932345517 0.132134627777549 0.134477221311361 0.128089535738207 0.126374932345517 0.126374932345517 0.131887323878906 0.130678186835033 0.126374932345517 0.135148959753215 0.131100073208860 0.128944479381171 C C + 74085 74110 74097 74082 74183 + gene protein_coding_gene FALSE TRUE ATCG00690.1 Encodes photosystem II 5 kD protein subunit PSII-T. This is a plastid-encoded gene (PsbTc) which also has a nuclear-encoded paralog (PsbTn). Identical to Photosystem II reaction center protein T (PSII-T) (psbT) [Arabidopsis Thaliana] (GB:P61839;GB:P37259); similar to Photosystem II reaction center protein T (PSII-T) (GB:Q6EYH9); contains InterPro domain Photosystem II protein PsbT; (InterPro:IPR001743) 0.153185901306338 0.947089835209259 0.364151544414803 1 -0.174924484772219 20.9612630563776 0.153185901306338 0.230876180135332
AT2G01440_at 5.05504135677765 4.90589125765366 4.73435247218308 4.70477741331784 4.7873588669541 5.55426353671655 4.65168617373473 4.41744864241788 4.19268946831906 4.01385181580417 3.97543095510624 3.76452251612205 3.9190784310171 4.43459151224614 4.12628648533605 4.38065287970404 4.31173064159298 4.20854024760792 4.10685374799113 0.219011570322980 0.217537603324516 0.212512658638826 0.215419362020616 0.228539038172835 0.219830135974883 0.219436695651506 0.225053797645145 0.231796977720302 0.22028726654169 0.220940849745479 0.213073498382227 0.219059406248748 0.222284731970456 0.238244375934797 0.215078594546624 0.231322677043884 0.231298986884015 0.221652818513059 2 2 - 194101 194637 194371.636 194093 199055 - gene protein_coding_gene FALSE TRUE AT2G01440.1 ATP-dependent DNA helicase, putative similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G02060.2); similar to Os02g0710800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047897.1); similar to DNA recombinase [Synechocystis sp. PCC 6803] (GB:NP_442137.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent DNA helicase RecG; (InterPro:IPR004609) 0.111655206266846 0.94706049207499 0.364165837421495 1 -0.174950333232962 8.97363707461761 0.111655206266846 0.141241702763303
AT2G07170_at 2.65191461633863 2.57532274835 2.6731504578814 2.70382101460478 2.61166740715943 2.85243718621059 2.278822938772 2.90613453983819 3.18208742499916 2.9487515041277 2.55911737518204 3.32721985265168 3.04920282941493 2.91748212081518 3.41803415493087 3.40338719837507 2.93572380986833 3.32727053759428 2.93006673072571 0.241087498010431 0.244536974471411 0.237520118640812 0.234971549432264 0.236549512265669 0.242551126675356 0.238754883619992 0.235628688480570 0.25244979185825 0.247762333908408 0.233780410245487 0.246363887846557 0.230621823547034 0.240718337987489 0.232407236434912 0.230621823547034 0.238711105245348 0.234498504807666 0.244343014612372 2 2|0 +|/ 2978092 2978431 2978218.625 2975562 2978817 + gene protein_coding_gene FALSE TRUE AT2G07170.1 binding similar to TOR1 (TORTIFOLIA 1) [Arabidopsis thaliana] (TAIR:AT4G27060.1); similar to Os09g0560000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063922.1); similar to potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigena] (GB:CAD45375.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.102049076937936 0.947030850104195 0.364180276397935 1 -0.174976444260114 5.72539967438016 0.102049076937936 0.117153908287982
AT3G29640_at 1.32406528605342 0.990071042464274 1.27903059817425 1.15126596513938 1.45827932398725 0.84316087526358 1.44820296568897 1.17424219025202 1.87418379624900 2.09965804122240 1.05825503613106 0.836828669885988 1.40696990457126 1.36998068638185 1.67718346265572 1.05855130914445 0.99642376030889 1.96867214159254 0.40930302568793 0.249914912249136 0.249914912249136 0.249914912249136 0.26213209625931 0.267537897295727 0.260454787934265 0.249914912249136 0.252958680608459 0.255537240808066 0.279707584809902 0.254797787383862 0.249914912249136 0.259182846909257 0.253180075801573 0.249914912249136 0.258860641646264 0.280744850106848 0.250022282404673 0.287761489608338 3 3 + 11490549 11490737 11490655.8 11490525 11491040 + gene protein_coding_gene FALSE TRUE AT3G29640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29632.1); similar to hypothetical protein 26.t00020 [Brassica oleracea] (GB:ABD65000.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.107825673429681 -0.946943373027004 0.364222889965274 1 -0.175053497108662 2.58736798540477 -0.107825673429681 0.131942256145520
AT2G15600_at 2.10826197111842 2.3032969832865 2.43078876565354 2.24455217893354 2.10840100130521 2.46444391814594 2.3307547571061 2.43968680745474 2.59007074708125 2.64405362775435 2.28067288049323 2.30914157272296 2.53892746190378 2.42925981529916 2.24096671550466 2.02332976372178 2.38368761415020 2.70113719187200 2.4414296070513 0.175067263910039 0.173233863436726 0.161427333274301 0.167934220352276 0.167131320689949 0.165214533009945 0.161374636519255 0.161607009075959 0.178749924166120 0.165997858093585 0.166843072011759 0.167558304731028 0.161374636519255 0.161507420722620 0.167768299664609 0.163929605434662 0.165660026879239 0.163229331680779 0.162392162142252 2 2 - 6812300 6812512 6812418.455 6812268 6812540 - gene protein_coding_gene FALSE TRUE AT2G15600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41505.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain gb def: Hypothetical protein At2g15600 (PTHR19446:SF12) -0.0892906403678548 -0.946854869316413 0.364266007270591 1 -0.175131448196968 4.76472748333589 -0.0892906403678548 0.0795591357128863
AT2G20840_at 2.9654788050807 3.1948256295644 2.39685308530199 2.84982994573318 3.04350927319974 2.89473044911234 3.40906462005807 3.25773119425030 2.8412833229992 3.02465791636444 2.60441050566753 3.24270341661517 2.57180880605674 3.23701055945674 3.27563374373503 2.69409998240022 2.95919337829638 2.99917743098278 2.31140068447064 0.219817034849030 0.220635344263228 0.223164147689342 0.223584393544578 0.21683889614609 0.222464659321446 0.218296319493949 0.22548804096269 0.222665451341577 0.224475226282220 0.21683889614609 0.228224848297201 0.217644157149529 0.218721756150843 0.227245145902412 0.217506901231372 0.223218632956953 0.220691381609923 0.220777828560192 2 2|0 -|/ 8979195 8980225 8979623.875 8978793 8981566 - gene protein_coding_gene FALSE TRUE AT2G20840.1 secretory carrier membrane protein (SCAMP) family protein similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT1G03550.1); similar to similarity to SCAMP37 [Pisum sativum] (GB:AAC82326.1); similar to Os01g0780500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044437.1); similar to Os07g0564600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060004.1); contains InterPro domain SCAMP; (InterPro:IPR007273) -0.0941601436391641 -0.946348294986695 0.364512870681915 1 -0.175577504608873 5.8383955598773 -0.0941601436391641 0.0952311727056581
AT2G32560_at 4.70177160968282 4.85090623639976 5.20484548912918 5.40036266908943 5.12164824212279 4.973642647233 6.02760356624811 5.97664400492326 5.93647946176787 5.5213899393526 6.38163619106654 6.35155688952591 5.90946754362276 6.37634658018512 6.32602803158207 6.76751948379086 5.7634562672428 6.12142049101663 6.15716094144137 0.140592466656566 0.135043104049072 0.139789615575388 0.137708710518059 0.136475045321686 0.149846205537955 0.142202560226683 0.144401665043866 0.141467731390335 0.135719690879046 0.140757421311821 0.139204897791994 0.139470500117208 0.145350536290809 0.141060417095052 0.142487446717694 0.139488123240332 0.136718908202115 0.14060359808245 2 2 + 13832224 13833765 13833087.909 13831871 13834063 + gene protein_coding_gene FALSE TRUE AT2G32560.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G26850.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABD33039.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0819477807401237 0.946153875163228 0.364607646912369 1 -0.175748645067410 11.3428559159076 0.0819477807401237 0.0504449558687685
AT3G26610_at 1.87540535591831 2.30420137912051 2.97644436662984 2.80438238897666 2.18526574647037 1.99846899351221 2.3673769813827 2.59806491512564 2.33553911132469 2.66976783788671 2.88918980034554 2.41201932677698 2.40767493484895 2.43892943782842 2.13827141472326 2.17297856373376 2.27838286138096 2.63055636229164 2.30812257450023 0.239239437426166 0.240461865134588 0.241948310298567 0.239129571104804 0.242100923906261 0.246453508952567 0.244465974537664 0.240905787354096 0.240332991130826 0.23434051752744 0.251809786187687 0.23434051752744 0.23434051752744 0.241019073756997 0.248651096310958 0.23434051752744 0.235912355027801 0.242817548017411 0.236310209314237 3 3 + 9780460 9781476 9781105.909 9778197 9781736 + gene protein_coding_gene FALSE TRUE AT3G26610.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G60590.1); similar to Os01g0636500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043666.1); similar to putative polygalacturonase [Oryza sativa (japonica cultivar-group)] (GB:AAT39158.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.0940343562572306 0.94573827516996 0.364810303562433 1 -0.176114383508458 4.81810635538123 0.0940343562572306 0.0950354236124476
AT3G58800_at 2.49456778647767 2.894796435377 2.50707203117006 2.57527570745628 2.71831312850432 2.77242862313758 2.71259342446273 2.7819500821173 2.97690091621807 2.83860712986579 2.85125338256047 2.75270930238168 2.60627655587848 2.74180480184685 2.75899498218808 2.62968749666103 2.54417730786713 3.27005482130172 2.78142212686832 0.171436591864994 0.1728252231718 0.177087626718878 0.169884544621372 0.176574159633204 0.178783680203572 0.182539235753366 0.170351992006194 0.179685466832495 0.175958416072616 0.171647604451015 0.169884544621372 0.191299075150903 0.175495450599051 0.176254650700814 0.178033870949166 0.182684573688808 0.172757371609283 0.180810493654929 3 3 + 21760016 21760516 21760233.182 21759205 21760905 + gene protein_coding_gene FALSE TRUE AT3G58800.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD86968.1); contains domain alpha/beta-Hydrolases (SSF53474) -0.0869890595949959 -0.945422768354113 0.364964206023997 1 -0.176391947708372 5.49963126349774 -0.0869890595949959 0.0718903203628676
AT1G34650_at 1.57446018635540 1.55150634068232 1.51935686144236 1.75939710273390 1.31137425639736 1.33601554575625 1.49160206467563 1.65749071672784 1.99183186330838 1.63307580503860 1.66143073612541 1.39197858178258 2.07898549962804 1.51462695317682 1.90061543737632 1.87483734621999 2.52623404609659 1.55267941185336 2.04315528990920 0.221783602657062 0.222260532428256 0.222983442606656 0.221130985901796 0.224639575576990 0.226026394078508 0.23042403673939 0.232760099870709 0.224099947951045 0.228151658167995 0.224170393263135 0.221130985901796 0.225561471662351 0.221130985901796 0.225520527994686 0.225379568922759 0.222595584535018 0.231048970845457 0.230086240503742 1 1|0 +|/ 12696752 12697728 12697260.778 12692981 12697798 + gene protein_coding_gene FALSE TRUE AT1G34650.1 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17320.1); similar to homeodomain protein HOX3 [Gossypium hirsutum] (GB:AAU12247.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.0819548517070838 -0.945332920854928 0.36500804160691 1 -0.176470976044513 3.37616429482194 -0.0819548517070838 0.0508299092934504
AT2G36900_at 7.75703398754598 7.93993271555261 7.47653192182077 7.44414462339006 8.55374463127415 7.43390037691785 7.20333513548869 7.11384128530955 7.51374644356955 7.17634399361395 7.09342924382602 6.62605298309168 7.05731043879703 7.19427387060355 6.87879710941369 7.21871944514906 6.65473332056638 6.92346372283556 7.66647895641363 0.186975365777635 0.183977492129996 0.188646220266623 0.181993172077742 0.194114257301855 0.202282901578521 0.18315054202702 0.181735976262524 0.201437769660074 0.192162249342161 0.185100886639817 0.184016021525108 0.187760357745708 0.186246378583653 0.183855198963922 0.181735976262524 0.195708067918267 0.195008885797528 0.181735976262524 2 2 - 15498726 15499543 15499129.182 15498514 15499901 - gene protein_coding_gene FALSE TRUE AT2G36900.1 MEMB11 (Golgi SNARE protein membrin 11); v-SNARE member of Membrin Gene Family Identical to Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member 2-1) (27 kDa Golgi SNARE protein) (MEMB11) [Arabidopsis Thaliana] (GB:Q9SJL6); similar to MEMB12 (Golgi SNARE protein membrin 12), v-SNARE [Arabidopsis thaliana] (TAIR:AT5G50440.1); similar to PREDICTED: similar to Gol (GB:XP_794856.2); similar to Os03g0655200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050802.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) -0.136398836851918 -0.944845509329524 0.365245909674487 1 -0.176899585470661 14.819326741988 -0.136398836851918 0.197051532150441
AT2G05720_at 2.81741914426504 2.92056662071069 2.90182450753545 2.82605227778708 2.80977549976813 2.75040396825727 2.75225137421232 2.33680480776138 2.69646191291041 3.20719321173216 3.15199285214711 3.03844895873665 3.1975664684804 2.85323470283963 3.02761070038011 2.99024070958731 3.06200450077284 2.75539968174222 2.94250900324003 0.192978149862739 0.194913342915000 0.192447142494669 0.192391773816692 0.20612105505748 0.200261139193150 0.199370694784809 0.194940377872281 0.192391773816692 0.201308052101598 0.196425145948967 0.195722710654482 0.196917052770112 0.194671594356188 0.194201885436209 0.195322586454411 0.202948971876368 0.193528947113800 0.192391773816692 2 2 + 2147522 2148188 2147935.636 2147189 2148212 + gene protein_coding_gene FALSE TRUE AT2G05720.1 transducin family protein / WD-40 repeat family protein similar to WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Arabidopsis thaliana] (TAIR:AT2G41500.1); similar to PRP4 pre-mRNA processing factor 4 homolog [Danio rerio] (GB:NP_956049.1); similar to Os03g0355200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050132.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0880472612372724 0.944760444478065 0.365287434616429 1 -0.176974369012108 5.7435291239355 0.0880472612372724 0.0759277531780067
AT3G56850_at 5.27490747687471 5.03669337795343 4.92295740202709 5.00031412706301 4.83360227630013 5.34656158469901 4.63836386764548 4.98495079450336 4.52024284704799 4.92126268571673 4.78513329800769 4.92557168141341 4.84555461435762 4.82396382721106 4.89955635244886 4.68046171324321 4.63893270867906 4.56645821992489 4.3897939633845 0.207453270859380 0.212037900270616 0.208310808574544 0.210985830602675 0.208076504295399 0.230384450614338 0.204832337860079 0.201758992795018 0.212850399705608 0.216320727081037 0.207602000076997 0.207753808414564 0.203866416161063 0.207933026500575 0.203719839146669 0.211152900799246 0.222649197323868 0.219074628733459 0.203576078041745 3 3|0 -|/ 21058135 21058485 21058350.1 21057320 21059495 - gene protein_coding_gene FALSE TRUE AT3G56850.1 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription factor/ transcriptional activator Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation. similar to EEL (ENHANCED EM LEVEL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G41070.2); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE83729.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.101200427402860 0.944687545999627 0.365323023146613 1 -0.177038452179697 9.69536247203017 0.101200427402860 0.115568875482291
AT2G44570_at 1.50890773277252 1.35370186302109 1.20109442505199 1.59844867356944 1.05363763094734 1.56245825427458 0.753481612207275 1.06387229512008 1.58577563396092 1.07892578376767 1.59950683896164 1.13823888825975 1.22169487434616 1.20384429401553 1.41270357093356 1.35788425457411 1.15631525852578 2.13957666978888 1.46499976185170 0.186107001498687 0.187790494219138 0.186107001498687 0.191990586970202 0.190390412819797 0.186227466080115 0.193306354371188 0.186107001498687 0.207919244536094 0.188241530963807 0.189559192430021 0.186133005920971 0.191987654824317 0.186107001498687 0.199888864843361 0.191418324863068 0.194483755271378 0.194130035652718 0.186588902876731 2 2|0 -|/ 18401501 18402161 18401787.6 18401318 18403344 - gene protein_coding_gene FALSE TRUE AT2G44570.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 15 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 15) [Arabidopsis Thaliana] (GB:O80497); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G44550.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G44560.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G44540.1); similar to cellulase homolog [Nicotiana alata] (GB:AAD28258.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) 0.105536195748086 0.944684719625941 0.365324403012395 1 -0.177040936688423 2.65209413138842 0.105536195748086 0.126840930680227
AT2G28180_at 1.88873576914508 1.31711149152904 1.59573781168987 1.59003014374471 1.49083322516045 1.34069566508380 1.85396387978456 1.75213469884841 2.19339121906235 1.62053772769233 1.61735939572966 1.52268075403476 1.43753409474493 1.59801876399524 1.65975060660523 1.83820651206226 1.71591591616466 1.81428909716754 1.12279660089584 0.213303299864345 0.213052732907937 0.222841455046017 0.217796507410297 0.214538283738004 0.218283365513883 0.220786423438943 0.213052732907937 0.215596184756932 0.224965444158013 0.222104829375994 0.215267044781555 0.222112695997131 0.225732858856870 0.217309864567673 0.215770018348329 0.215155802900855 0.216136678474233 0.215951563767114 2 2 - 12018139 12018743 12018462.545 12018071 12020967 - gene protein_coding_gene FALSE TRUE AT2G28180.1 ATCHX8 (cation/hydrogen exchanger 8); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX5 (CATION/H+ EXCHANGER 5), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G08150.1); similar to Na+/H+ antiporter-like protein, putative [Medicago truncatula] (GB:ABE89964.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.0968840191971016 -0.94432064344207 0.365502179974717 1 -0.177360923920620 3.25167762317985 -0.0968840191971016 0.103789144906939
AT4G39930_at 0.682157517820174 0.761706856786631 1.03269358996120 0.919041618628752 1.22779989558897 0.738242100045438 1.11101411741267 1.30604751308472 1.46056132068283 1.30889801461204 1.03264180121913 1.51106542028310 0.708662836019384 1.12483872180255 1.4334942326337 1.22764514891953 1.15252128894097 1.06629423245144 1.30634579976296 0.217104674393983 0.213624394778197 0.220471100555833 0.221916676510573 0.220107588802176 0.213624394778197 0.214468929462905 0.2204828079801 0.221714703668041 0.223801230169459 0.220297698156489 0.217991675232454 0.222571769841457 0.216269440168934 0.220235042981254 0.216368212412950 0.213624394778197 0.219016142266745 0.213624394778197 4 4 - 18518585 18518849 18518701.455 18518337 18518977 - gene protein_coding_gene FALSE TRUE AT4G39930.1 unknown protein -0.09362172581109 -0.944025913852357 0.36564614045507 1 -0.177619886711838 2.23021148715090 -0.09362172581109 0.0943028404873533
AT1G28040_at 3.08955002574559 3.07557851131220 3.16884000326032 3.41937334832452 3.1978259616531 2.68932742342578 3.26881193483149 3.15635058693202 3.42384848235961 3.43561431575527 2.93846927221809 2.94623074820774 3.26850329623604 3.29093407992361 3.43435605546870 3.20381365955208 2.95469680688668 3.36962741134100 3.15507878264967 0.220474536315465 0.225205196034345 0.220485924761692 0.235421055989969 0.222045826857704 0.228473003400304 0.228279225261512 0.220361559014578 0.221014677985211 0.220268608871428 0.221747634577128 0.225868620481947 0.219695072410268 0.223827868633049 0.230160526301958 0.22212806174077 0.220783561140033 0.227746935533750 0.229032959390249 1 1 - 9773622 9774619 9774100 9773567 9775468 - gene protein_coding_gene FALSE TRUE AT1G28040.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G46495.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE94043.1); contains InterPro domain CUB; (InterPro:IPR000859); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0955413456158337 -0.943914456442188 0.36570059229178 1 -0.177717800622621 6.390211946011 -0.0955413456158337 0.100040037572022
AT2G27000_at 1.07389751437676 1.06975883072632 1.51594299322969 1.18301260999401 0.957232652193355 1.46637591164175 1.00959796950461 1.02155906968568 1.21785555367294 1.28177628398114 1.11312883914138 0.881780677099054 1.04628298973651 1.28921525993652 1.47514070828247 1.22536215843009 1.52387410937761 1.10357653655969 1.24883332210365 0.173361260932561 0.174234646819836 0.171449566103546 0.179874596254264 0.170869128706237 0.175994363008327 0.170869128706237 0.172719672776017 0.183312416834482 0.17512833742647 0.171525618099774 0.173841805278242 0.186719283195796 0.173008297752623 0.175864858620426 0.174841839738374 0.179864170708949 0.179665079060200 0.177809822830772 2 2 - 11530553 11530961 11530771.364 11530382 11532173 - gene protein_coding_gene FALSE TRUE AT2G27000.1 CYP705A8 (cytochrome P450, family 705, subfamily A, polypeptide 8); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A32 (cytochrome P450, family 705, subfamily A, polypeptide 32), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20950.1); similar to CYP705A9 (cytochrome P450, family 705, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G27010.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.097372234462931 0.943894647530737 0.365710270419559 1 -0.17773520148573 2.39056396712218 0.097372234462931 0.105297711578459
AT3G20210_at -0.314957161077074 0.106648745498125 -0.299775163741087 -0.158983648433855 -0.11233568316675 -0.0459597756277712 -0.317556768877804 0.0249105558254067 -0.240515680684768 -0.383451861414652 -0.411910506319531 0.0231152156749668 -0.0965670060269653 -0.207402146451813 -0.298942451016855 -0.112166176180351 0.441657746969461 -0.0367874842968109 -0.293699527473403 0.202906494919483 0.202906494919483 0.208533589767621 0.210042186789578 0.202906494919483 0.202906494919483 0.207331815932577 0.202906494919483 0.219693998127195 0.211159109793658 0.209722226530021 0.203047991912615 0.207732933727667 0.202906494919483 0.21309963103693 0.207543457957806 0.212994369302121 0.215773812832048 0.208076428467243 3 3 + 7053836 7054448 7054096.909 7052426 7054749 + gene protein_coding_gene FALSE TRUE AT3G20210.1 DELTA-VPE (delta vacuolar processing enzyme); cysteine-type endopeptidase Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. similar to GAMMA-VPE (Vacuolar processing enzyme gamma), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT4G32940.1); similar to unnamed protein product [Homo sapiens] (GB:BAC86022.1); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) 0.0947443808252124 0.943634247246782 0.365837512322779 1 -0.177963918083550 -0.336383299523565 0.0947443808252124 0.0977817688621432
AT1G15870_at 1.62362396753044 1.93773179885935 2.28732021025663 2.11678602948187 1.40381457205488 1.60385348793843 2.0180873134585 1.92009713329032 2.1912375819359 1.74126122448563 1.82940410238563 1.63255537204953 1.64608946019197 1.39489982585698 2.00101191190411 1.59510302494632 1.78041606875719 1.91285993794263 1.69630602798830 0.203506149480783 0.203506149480783 0.210396957050288 0.209385342356257 0.205691397676807 0.209456565306652 0.213116700717336 0.209126604657527 0.207807784264644 0.213845325734334 0.203506149480783 0.203506149480783 0.217204731477786 0.206843447242171 0.207362888168934 0.206084192615409 0.217209541881715 0.212192425086271 0.215391285805327 1 1 + 5457280 5458087 5457704.545 5457078 5458423 + gene protein_coding_gene FALSE TRUE AT1G15870.1 mitochondrial glycoprotein family protein / MAM33 family protein similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT1G80720.1); similar to Os09g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063903.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16469.1); similar to Os08g0439900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061899.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) -0.0870836467420064 -0.94351695918716 0.365894834228223 1 -0.178066918100151 3.66406968467925 -0.0870836467420064 0.0728811410649934
AT1G67670_at 2.29250186119088 1.80487473214149 2.52457046522414 2.22522995112934 1.84051297891284 2.34198054650413 2.07769035118078 2.43573216643253 2.61789005609310 2.6328317866915 2.2799050917565 2.33329088183674 2.47708438557059 2.2496871656354 2.28076222086531 2.15700691453153 2.82300291393592 2.44315574282058 2.80995551223177 0.170251566587830 0.161089480595414 0.160132314715096 0.164178695815597 0.164089822953396 0.163903591483755 0.168724381837602 0.168058983089111 0.169006417109928 0.166072738370839 0.162446214456927 0.164232124739322 0.166584623007463 0.162770355725141 0.160132314715096 0.162665927393361 0.165836820743459 0.162920302200143 0.169177040322733 1 1 + 25369146 25369304 25369230.545 25369136 25369330 + gene protein_coding_gene FALSE TRUE AT1G67670.1 unknown protein -0.113015914673431 -0.943435988354682 0.365934410640370 1 -0.178138018805407 4.72657631473511 -0.113015914673431 0.145515061922199
AT3G05600_at 1.20185041325409 0.822512285286926 1.20138054725195 0.901295266257925 0.708131321573379 0.85500055852589 0.888222790706477 0.715658033055395 1.48910935076243 1.06453867931051 0.560139297292486 0.777973664072429 1.43549386397047 0.972638087255988 0.963083515890451 0.907525501645076 1.55448934305290 0.980767947460168 1.08888840463338 0.199582433627968 0.195734620981433 0.202177462810830 0.195822750446031 0.195432097146494 0.198311234974162 0.198014938995902 0.195531718208323 0.206894533974712 0.20300807103609 0.200200374072557 0.202934911230122 0.202349250489561 0.201552075277457 0.210714670979377 0.195356783562046 0.198496839830317 0.195356783562046 0.200735054162879 3 3|0 -|/ 1623506 1624273 1623761.8 1623250 1624769 - gene protein_coding_gene FALSE TRUE AT3G05600.1 epoxide hydrolase, putative similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G02340.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE85693.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.0928869330811061 -0.942785097846363 0.366252659655066 1 -0.1787093819444 2.02835275906339 -0.0928869330811061 0.0924341577991759
AT2G46030_at 8.36146910056148 8.25117011240013 8.90318075783513 8.72521924484229 9.21054578975134 9.00377465176222 9.14333179701599 9.12607623592559 9.29105934080455 9.14664592495388 8.9861858919678 8.95064292454934 9.10705348749019 9.18332817929289 8.7885598991322 9.30465346067187 8.8537991159286 9.21709070811984 8.9391429120962 0.157426700167373 0.153854651303089 0.170724800027317 0.171235909141891 0.156039539144160 0.166919304038876 0.157716078536292 0.153188566329787 0.169481124620825 0.162156030951131 0.153368666154214 0.155533458752786 0.151704976389437 0.15724345092956 0.161620528883594 0.163074449473757 0.162959158506223 0.164902059195936 0.157418014202162 2 2|0 -|/ 18939535 18940466 18939870.889 18939092 18940580 - gene protein_coding_gene FALSE TRUE AT2G46030.1 UBC6 (UBIQUITIN-CONJUGATING ENZYME 6); ubiquitin-protein ligase Ubiquitin conjugating enzyme E2 Identical to Ubiquitin-conjugating enzyme E2-21 kDa 3 (EC 6.3.2.19) (Ubiquitin- protein ligase 6) (Ubiquitin carrier protein 6) (UBC6) [Arabidopsis Thaliana] (GB:P42750;GB:O49739;GB:O82365); similar to UBC4 (UBIQUITIN CONJUGATING ENZYME 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G41340.1); similar to ubiquitin conjugating enzyme (GB:AAA32900.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.0817332243405784 0.942351589200958 0.366464730516881 1 -0.179089740298032 17.9278610951013 0.0817332243405784 0.0510109921029271
AT4G30200_at 8.80924581540006 8.99431609732935 9.22493041745218 9.13909073650227 9.4296305068851 9.31285662281858 9.23721517182017 9.27724074049834 9.12026330791462 9.06023931198165 9.19927790532547 9.11470251881693 9.10793026147313 9.05086235251228 8.96339185403217 9.24112881300836 9.26018473781469 8.97936645516253 9.27518394283098 0.0928609342878459 0.0917841203533176 0.0924468967467798 0.096821877196104 0.0917841203533176 0.0955311669874912 0.0951964354472163 0.0922514301685006 0.103604658150618 0.0980179991032109 0.0926234801348601 0.093786017702373 0.0967343524103388 0.096121071265158 0.0917841203533176 0.0996419712346412 0.0969204841369372 0.097968760998831 0.0917841203533176 4 4 - 14786879 14787399 14787090 14786639 14790509 - gene protein_coding_gene FALSE TRUE AT4G30200.1|AT4G30200.2|AT4G30200.3 similar to VIN3 (VERNALIZATION INSENSITIVE 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G57380.1); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE86602.1); contains InterPro domain Fibronectin, type III; (InterPro:IPR003961)|similar to VIN3 (VERNALIZATION INSENSITIVE 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G57380.1); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE86602.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Fibronectin, type III; (InterPro:IPR003961) 0.0799163530058327 0.94234378819743 0.366468547540833 1 -0.179096583518544 18.3113163301769 0.0799163530058327 0.0412646101528644
AT1G34280_at 3.33031074019451 3.56492414163188 3.94678866300101 3.68881603913939 3.55681451849177 3.69274605980843 3.54298902023342 3.42806451492136 3.90516029680814 4.13258076029827 3.90906058762859 3.34855217275214 3.84653411367295 3.23157450429405 3.91622583248467 3.34901597249597 3.85437451940474 4.01248347606723 3.26325529654725 0.167917791866320 0.169396274250761 0.172738470635879 0.167561113735745 0.174512393538551 0.175193081461720 0.171509814858917 0.178915404395381 0.16794703232225 0.168713238238776 0.171359668644554 0.171254250787657 0.167561113735745 0.17214641480116 0.168625795777515 0.171057190646779 0.17700158423168 0.172350340014513 0.169635358968864 1 1 - 12495122 12495335 12495213.455 12495120 12495359 - gene protein_coding_gene FALSE TRUE AT1G34280.1 unknown protein 0.0855990393318394 0.942211411148789 0.36653332382947 1 -0.179212700491488 7.31916992812835 0.0855990393318394 0.0677522487592485
AT4G37870_at 9.84611264489766 9.81490439166355 9.50484660266608 9.5376056643662 9.72343676101173 9.7433061904089 9.9556617354043 10.0196371461114 9.24363747206514 9.5913764030895 9.37667284286716 9.56796538527238 9.5587759126085 9.66172738987433 9.41438299070348 9.56111678742586 9.87392684765942 9.61454134360386 9.51593800444161 0.0960104726805916 0.09340282443338 0.0930770349691005 0.0956253797825128 0.0939902196578573 0.0953395743310092 0.0964212860659049 0.0928815432698779 0.0999595840468922 0.0940730518732518 0.0975680849126153 0.0914422413978374 0.0958505917941784 0.0945838444179681 0.094945888754932 0.0919959893490774 0.0997846517673238 0.0983161173053866 0.0962519506557372 4 4|0 -|/ 17802979 17803793 17803502.5 17802688 17806533 - gene protein_coding_gene FALSE TRUE AT4G37870.1|AT4G37870.2 phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative|ATP binding / phosphoenolpyruvate carboxykinase (ATP) Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).| Identical to Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) [Arabidopsis Thaliana] (GB:Q9T074); similar to phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative [Arabidopsis thaliana] (TAIR:AT5G65690.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43908.1); similar to phosphoenolpyruvate carboxykinase [Flaveria pringlei] (GB:BAB43909.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43907.1); contains InterPro domain Phosphoenolpyruvate carboxykinase (ATP); (InterPro:IPR001272); contains InterPro domain Phosphoenolpyruvate carboxykinase, N-terminal; (InterPro:IPR008210) -0.0767293903014319 -0.941763626330355 0.366752499607306 1 -0.179605381952295 19.2826668824165 -0.0767293903014319 0.0139893675976865
AT3G55250_at 9.78289122581675 9.78459819455663 9.61167270748222 9.44892348687289 9.69346820230903 9.6251696306224 10.3052896770967 10.4133337495528 9.98980530005204 10.1531669869028 10.2657035615299 10.3227029749081 10.1836153721241 10.487957478186 10.1713135183172 10.5128808240809 10.3122025949708 10.0640085210736 9.7709298889103 0.100836860292740 0.0954586414610505 0.0980041819097435 0.10632493320052 0.0982284368396604 0.098728753036344 0.100730915470858 0.100599872601460 0.113778528750147 0.0976611439229389 0.102144012475163 0.0959079865391575 0.102254942823719 0.101355702156248 0.0990090184019742 0.0960235448382483 0.102150381027119 0.105812339809935 0.102788086015804 3 3 + 20490514 20491120 20490771.364 20490266 20491611 + gene protein_coding_gene FALSE TRUE AT3G55250.1 similar to calcium homeostasis regulator CHoR1 [Solanum tuberosum] (GB:AAQ14193.1) -0.0789861622868202 -0.941539982451366 0.366862000798056 1 -0.179801446196260 19.9638427747573 -0.0789861622868202 0.0358137197633799
AT2G04870_at 3.5604295016115 3.07944061528592 3.39834839867444 3.1728973580673 2.65723842616809 3.24778641538003 3.14607439446616 3.24470763012279 3.50009969025099 3.84668359348863 3.38639210912397 3.49292505549165 3.44696437163481 3.48773707613874 3.58073673623299 3.4246019401724 3.76792364260318 3.32213249313401 3.36260536038436 0.195873004638595 0.198724446725791 0.193070328610114 0.194710933790483 0.193720926282476 0.190910737390324 0.197210668306143 0.191109475933559 0.191454982028049 0.188999641889322 0.191735650884855 0.189397459955537 0.191006293564058 0.188999641889322 0.189623937471231 0.188999641889322 0.196647603487024 0.191289797067254 0.192906036069034 2 2 - 1716167 1716359 1716276 1716165 1716383 - gene protein_coding_gene FALSE TRUE AT2G04870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49680.1) -0.109857461220327 -0.94135802638343 0.366951107854084 1 -0.179960934770370 6.71760178885926 -0.109857461220327 0.138514440780388
AT4G19960_at 9.09304934484177 9.21959634234092 9.34895983728643 9.08104589539495 9.29055150092399 8.82154556696566 9.2294457251865 9.11965449564864 7.46713412335708 8.31491987679665 7.43024074715312 8.21583624180425 8.47710864556014 8.29022364098103 6.28079137318413 8.54038627853875 8.69140282647737 8.13981478150853 7.58574092236015 0.149497091338046 0.146819235151368 0.14862802255313 0.159343642053599 0.142883091054615 0.151788432520289 0.145829052887890 0.146057133049883 0.167530467785029 0.149150379208647 0.162698611432584 0.148983697221484 0.150745081322058 0.147498600622192 0.181830979738350 0.142883091054615 0.160287916547056 0.154827451172228 0.170042743604349 4 0|4 /|+ 10816508 10816957 10816643.3 10813595 10817060 + gene protein_coding_gene FALSE TRUE AT4G19960.1 potassium ion transporter similar to KUP11 (K+ uptake permease 11), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT2G35060.1); similar to KUP10 (K+ transporter 10), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G31120.1); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to Putative potassium transporter 12 (OsHAK12) (GB:Q8VXB1); similar to putative potasium transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD21001.1); similar to Putative potassium transporter 9 (AtPOT9) (GB:O49423); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.0945249079339592 0.941166102240258 0.367045113151543 1 -0.180129132604352 17.0492263591097 0.0945249079339592 0.0978658478663934
AT2G02990_at 1.20942880533976 1.46256029007347 1.37477287247064 1.06068610189532 1.19282856990727 1.41662589308370 1.06881267042929 1.24682248984151 1.21287963914677 2.17385514762772 1.26459924787853 1.18307659383230 1.45920762898249 1.14296089547892 1.39148268453704 1.4554051374731 1.15965785503136 0.775171485300886 0.88635925913668 0.192507080825068 0.192402749850302 0.196447677811937 0.19137212875221 0.191392693856171 0.194666965241942 0.199466682673000 0.192822676505526 0.189712154208370 0.199623247448001 0.191852716106613 0.189712154208370 0.190149278515413 0.198223306878301 0.191491239378236 0.191253687830913 0.202990822522867 0.205119892502579 0.203067448197984 2 2 + 873958 874637 874294.636 873505 874810 + gene protein_coding_gene FALSE TRUE AT2G02990.1 RNS1 (RIBONUCLEASE 1); endoribonuclease member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid. Identical to Ribonuclease 1 precursor (EC 3.1.27.1) (RNS1) [Arabidopsis Thaliana] (GB:P42813); similar to ribonuclease T2 family protein [Arabidopsis thaliana] (TAIR:AT1G14220.1); similar to ribonuclease T2 [Cicer arietinum] (GB:CAA10130.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) -0.0905485977439193 -0.94108216908462 0.367086229372865 1 -0.180202680630973 2.58072214814748 -0.0905485977439193 0.0855700254686572
AT1G15750_at 9.39631770096588 9.42554865759934 9.55854901317538 9.62472516790655 9.84421448567843 9.56015519758174 8.9916100407136 9.04407368122433 9.6435414777446 9.34431556852276 9.3091643254481 9.30462345456063 9.33619770039136 9.29804596801693 8.94919794191958 9.49254897370657 8.95905345777915 9.26451101353289 9.5368547866968 0.109512018430624 0.10380198121123 0.112491985038119 0.105736786143294 0.104163231667865 0.111421542109591 0.113810149617712 0.106323911136490 0.120208052979367 0.107748882679677 0.109641475087131 0.104060269434838 0.10380198121123 0.108964208841438 0.108148274552651 0.10380198121123 0.112575358832511 0.112360253358511 0.10380198121123 1 1 - 5415141 5415799 5415461.727 5414812 5420908 - gene protein_coding_gene FALSE TRUE AT1G15750.1|AT1G15750.2|AT1G15750.3|AT1G15750.4 TPL/WSIP1 (WUS-INTERACTING PROTEIN 1); protein binding|TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top help of the embryo during the transition stage of embryogenesis. similar to TPR1 (TOPLESS-RELATED 1) [Arabidopsis thaliana] (TAIR:AT1G80490.2); similar to TPR2 (TOPLESS-RELATED 2) [Arabidopsis thaliana] (TAIR:AT3G16830.1); similar to TPR4/WSIP2 (TOPLESS-RELATED 4) [Arabidopsis thaliana] (TAIR:AT3G15880.2); similar to WD-40 repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC99788.1); similar to CTV.2 [Poncirus trifoliata] (GB:AAN62336.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.0817270113622066 0.941049813293811 0.367102080336065 1 -0.180231031541625 18.8043518091427 0.0817270113622066 0.0515330652757645
AT4G03480_at 0.850609479393681 1.28759480290060 1.14317299179675 0.830752917468985 0.749567574239293 0.673245858561062 0.893405912781506 1.09812343511078 0.979527152206502 1.33993443530305 1.14892059998113 0.999736237340748 1.48743980920015 0.796944081089203 1.16191900542624 0.810143538784702 0.86018309281861 1.02441623757155 0.811573264804424 0.18240737578451 0.192515186869909 0.181501126723589 0.187144120779056 0.18721382927275 0.192842707771329 0.193244265457308 0.195662421490415 0.202291645493304 0.185992902389913 0.185078007333894 0.183248139306644 0.185328526038402 0.185300311182954 0.186439452141550 0.184402160635196 0.188670832396247 0.190107996015598 0.188258955156384 4 4 - 1546096 1546559 1546286.273 1546022 1548869 - gene protein_coding_gene FALSE TRUE AT4G03480.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G03440.1); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to ankyrin repeat family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD28446.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0953570154291162 -0.941023966230223 0.367114743051851 1 -0.180253678764516 1.98075467622218 -0.0953570154291162 0.100356299581366
ATMG00710_at 1.60068145166533 1.84337488303581 1.93128828342642 2.63735695101650 1.60166267655329 2.02682849679552 1.92527346007358 1.95217748863935 2.00020931865399 1.72230479860532 2.1065773537819 1.91370852555791 2.02536859407917 2.41019338231960 1.61144584321693 2.03751033717328 2.25319760023379 2.09884723160750 2.42101883928477 0.204710751072501 0.19956146555745 0.200317292264509 0.202198652753850 0.200551730654806 0.214924769326233 0.200155543702635 0.201690693286328 0.208404417608936 0.215341542987692 0.216242112706906 0.209791256806602 0.201427487946468 0.213853896469081 0.208810030743423 0.19956146555745 0.203441242227774 0.208418572311267 0.202504245968239 M M - 207571 207858 207723.8 207553 207915 - gene protein_coding_gene FALSE TRUE ATMG00710.1 Identical to Hypothetical mitochondrial protein AtMg00710 (ORF120) [Arabidopsis Thaliana] (GB:P92512); similar to Os11g0157000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065797.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAT44282.1); similar to Os08g0518300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062251.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Integrase, catalytic region; (InterPro:IPR001584) 0.114084535371324 0.940921777154247 0.367164809471734 1 -0.180343211831693 3.99230567507287 0.114084535371324 0.148758866717866
AT3G01480_at 10.7691159291621 10.8157122260276 10.3823851852089 10.3165518268873 10.8857289894633 10.4677423092698 11.3020170382169 11.178638557662 11.2662817086935 11.538556783813 12.0300079762016 12.0544376435776 11.5991371917244 11.6917533595183 12.0784103038024 11.8691474085720 11.1647014732483 11.6606978705985 11.5184006142251 0.0848196582282478 0.0852873011081706 0.0918195966547559 0.0862967052884228 0.0865306066265396 0.0978377213477137 0.0863893683511434 0.0894418842118104 0.095696808165504 0.0890536374357117 0.0866880485999717 0.0844404093437341 0.085550051352853 0.0933561373040617 0.0852642207405371 0.0844404093437341 0.102822013256896 0.0915672519616266 0.09113491214969 3 3 + 189856 190643 190241.364 188391 190858 + gene protein_coding_gene FALSE TRUE AT3G01480.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase [Arabidopsis thaliana] (TAIR:AT3G15520.1); similar to Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) (GB:O49939); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.087905954449136 -0.94089841228547 0.367176257516390 1 -0.180363681842026 22.3695446855618 -0.087905954449136 0.0767005836889015
AT1G25420_at 7.72534255651951 7.44264317816704 7.64579053461594 7.5897149915292 8.00224607558656 7.84862240093115 7.978821586704 7.85018558287731 7.58468311309086 8.01341472495285 7.56641375299638 7.74853738367389 7.63854003133308 7.75875552750407 7.58917751583699 7.72407716395669 7.75347760206709 7.41324829505125 7.91844512642824 0.148844304975623 0.14068124111874 0.148858076496119 0.146914529910873 0.14068124111874 0.148088434659755 0.142178485345151 0.143009454644124 0.164667357595976 0.152440095298080 0.152060364531155 0.14068124111874 0.145024350970342 0.143452337331923 0.14068124111874 0.14068124111874 0.149598348436200 0.146550326992694 0.148834742648980 1 1 + 8917059 8917899 8917637.909 8916046 8918219 + gene protein_coding_gene FALSE TRUE AT1G25420.1|AT1G25420.2|AT1G25420.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34220.2); similar to hypothetical protein [Solanum tuberosum] (GB:BAE46414.1); similar to Os08g0175200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061111.1); similar to Os01g0687700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043915.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34220.2); similar to Os08g0175200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061111.1); similar to Os01g0687700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043915.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46466.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) -0.0837369855864023 -0.940773644406804 0.367237394121605 1 -0.180472984031964 15.5043588953045 -0.0837369855864023 0.0607446175900821
AT4G25490_at 3.47073670017733 3.3487681167959 2.87047602353722 3.09484738683148 3.25276554984572 3.41031840723697 2.39808770397055 2.46286653798268 2.76881838949175 2.56615867887032 2.71177969035486 2.28238226840716 2.44643687252503 2.19279308352527 3.00709505947534 2.36203088328081 2.94514117768089 2.55625468038139 2.57284145618466 0.224710342456546 0.234311404951440 0.218337841268833 0.223352462513590 0.220552987984613 0.228043472819189 0.218676458930816 0.223050832475596 0.220686698148719 0.218534262190133 0.218398510158174 0.219183451788649 0.226391815567459 0.226271474995071 0.220915784902595 0.217482635785374 0.218374729255041 0.231058182090169 0.217111192178148 4 4 - 13021932 13022490 13022172.273 13021790 13022735 - gene protein_coding_gene FALSE TRUE AT4G25490.1 CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription factor/ transcriptional activator Transcriptional activator that binds to the DRE/CRT regulatory element and induces COR (cold-regulated) gene expression increasing plant freezing tolerance. It encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF1). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. Identical to Dehydration-responsive element-binding protein 1B (DREB1B protein) (C- repeat-binding factor 1) (C-repeat/dehydration-responsive element- binding factor 1) (CRT/DRE-binding factor 1) (DREB1B) [Arabidopsis Thaliana] (GB:P93835;GB:O65611); similar to CBF2 (FREEZING TOLERANCE QTL 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G25470.1); similar to CRT/DRE binding factor 1 [Iris lactea var. chinensis] (GB:AAZ57434.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0820183917014147 0.9405943843972 0.367325244706753 1 -0.180630002483601 5.63807266461527 0.0820183917014147 0.0531246938318933
AT1G01150_at 0.403787144825275 0.285371535317692 0.570788787423466 0.307475304293492 0.485804515848725 0.393546803348057 0.766919258400939 0.3719008580934 0.337015586815709 0.587322174603574 0.88477589337654 0.597888029630613 0.878715506077768 0.65919724125899 0.583612770367686 0.855642076514203 0.587147244232313 0.543110291546277 0.575122424935767 0.176997579831761 0.175566923798746 0.180793838567792 0.182805735178363 0.175566923798746 0.176809950605819 0.178927208588581 0.183397475807711 0.187835504575485 0.177056235907717 0.185338369446761 0.180386513599570 0.177459937010540 0.186372779876149 0.185415938002546 0.179066689694820 0.186312014495291 0.187825440023469 0.182276722481167 1 1 - 70158 71314 70865.727 70115 71998 - gene protein_coding_gene FALSE TRUE AT1G01150.1 DNA binding / zinc ion binding similar to TRFL10 (TRF-LIKE 10), DNA binding [Arabidopsis thaliana] (TAIR:AT5G03780.1); similar to Os11g0160700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065819.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95463.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0906751115381536 0.940492933359757 0.367374969803066 1 -0.180718854946120 1.04748987281583 0.0906751115381536 0.0861644139722628
AT3G18810_at 2.20833699925233 1.67342396989379 1.78203316927150 1.74433530002524 1.82718456461896 1.64255169300622 1.71596514124989 2.16697883790682 2.51503422517995 2.01396925372573 2.28758886515784 2.11039486883984 2.25276848026282 2.07830140475471 2.16623697243856 1.81929090797257 2.22523464218795 2.28284127450238 1.97973742989757 0.183983603176369 0.188476401323956 0.182665896124623 0.185102330712635 0.180758737239613 0.183506973474810 0.181364756771207 0.186624878614861 0.178914367468397 0.177688949660059 0.181668508854064 0.189199925478353 0.185871751702550 0.17807677740099 0.181891456089215 0.185401369751409 0.177688949660059 0.184278537251846 0.177688949660059 3 3 - 6480777 6481406 6481091.545 6480707 6483599 - gene protein_coding_gene FALSE TRUE AT3G18810.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G18470.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G49270.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G34440.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78862.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.104449090632531 -0.940010631457732 0.367611430242418 1 -0.181141152917970 4.00630744937759 -0.104449090632531 0.125396671617102
AT3G07090_at 7.9212020053693 8.34374882152995 8.40040360310777 8.46156433734884 8.46098745095617 8.0979098879096 9.31372020950514 8.86081308839039 8.39467578979782 8.91503832876736 9.06450378967154 8.68869278040273 8.64336483073385 8.61800297596129 8.664349713947 8.8911256962527 8.48795486381636 8.85282777068737 8.76773593172973 0.144282094348552 0.136351976325560 0.141965480422208 0.145194456023569 0.147612470866369 0.149795539115237 0.141841934305598 0.141435008548550 0.148516759458601 0.141233891760849 0.136351976325560 0.136351976325560 0.145145980829378 0.144602054934147 0.151169392303663 0.140184719822439 0.150531343780633 0.152094844682467 0.143207944818836 3 3 - 2243290 2243811 2243542.182 2243004 2244826 - gene protein_coding_gene FALSE TRUE AT3G07090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25170.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47783.1); similar to unknown protein [Oryza sativa] (GB:AAG16855.1); similar to Os02g0814000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048488.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) -0.104142629391147 -0.93969367391377 0.367766885486091 1 -0.181418578423023 17.1982117519059 -0.104142629391147 0.124699860296447
AT2G16810_at 0.391036832932224 0.444191358135754 0.9335019085135 0.432270242875449 0.110710389035082 0.475373341279644 0.546307009890526 0.430204489513619 0.423588296522758 0.799128795679327 0.534045195848101 0.490578968474399 0.215324952789640 0.448689421186807 0.122400489748116 0.356179190789185 -0.0465615747633823 0.542902756383694 0.471855779659581 0.207419983738814 0.216021131553038 0.204665605906375 0.205549197069458 0.204199667242558 0.210719501058628 0.209594429662022 0.206139470949313 0.215717476385103 0.210974731240078 0.209073873415678 0.204199667242558 0.204199667242558 0.209507957099574 0.216763806805797 0.204199667242558 0.21906213386 0.212746470903203 0.205015141065126 2 2 - 7294781 7295260 7295002.4 7294494 7296027 - gene protein_coding_gene FALSE TRUE AT2G16810.1 F-box family protein (FBX8) similar to F-box protein-related [Arabidopsis thaliana] (TAIR:AT2G40910.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE77917.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.098441825544465 -0.939655523441754 0.367785599949703 1 -0.181451965349005 0.919350721027454 -0.098441825544465 0.109520149840576
AT3G62790_at 8.26448191172775 8.31244078772266 8.42531467507757 8.66294395535654 8.14998708278485 8.30327050840618 8.30483225013508 8.70540949648935 8.30060491335507 8.55668005510893 8.87694977803104 9.0352718988998 8.65108154415746 8.79567700381675 8.58720648120135 8.78530971699758 8.39315233105808 8.50075797620386 8.67623592836422 0.169562000663298 0.168428396771537 0.166133743828966 0.167022066734691 0.168427221464593 0.161562521177105 0.167879185229154 0.164242056493282 0.174132515687368 0.161252696713846 0.165098383781149 0.169655480795922 0.162195729168028 0.173882630048644 0.163994599546786 0.164162762645056 0.167791812813149 0.169668406170642 0.161807331862473 3 3|0 -|/ 23234303 23235141 23234783.6 23234036 23235283 - gene protein_coding_gene FALSE TRUE AT3G62790.1 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT2G47690.1); similar to fiber protein Fb14 [Gossypium barbadense] (GB:AAP34361.1) 0.0902950764536175 0.939438237285492 0.367892201166634 1 -0.181642099046436 16.9982598202484 0.0902950764536175 0.0852591816940454
AT3G49560_at 9.40230171714252 9.33469380709383 9.18423818715402 9.05263282209353 9.48354831444581 8.98336863177482 9.56846152825065 9.4214074245391 8.86681525269647 8.9664001199394 8.92704291228872 9.02995485519009 8.97359068068597 8.9511851577422 9.06796545003166 8.8660329704398 8.60092097807523 8.82383747300195 8.67251084254287 0.129110893647267 0.132658105905633 0.133600524694606 0.130247357389085 0.132045455427622 0.134423226032998 0.130545762138770 0.134854208834117 0.131500041837265 0.130346355368714 0.132394637509772 0.125891164531992 0.127415158528503 0.131534235526487 0.128928816778829 0.128082380894261 0.142913468901157 0.139937218219149 0.141433546583862 3 3|0 +|/ 18381853 18382641 18382133.75 18381549 18383124 + gene protein_coding_gene FALSE TRUE AT3G49560.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein similar to mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] (TAIR:AT5G24650.1); similar to H0502B11.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66528.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.092972446216886 -0.939191127261297 0.368013460771503 1 -0.181858284971509 18.1739857447659 -0.092972446216886 0.0937846796811892
AT3G46920_at 4.41412304263882 4.86957163785806 4.86772528911708 5.08410845975772 4.2788670221587 4.33502901758585 3.65440868225810 4.16339457242608 3.59751317753664 4.52604032425577 3.05924792194202 3.68472638321776 3.58066888941177 3.65573100266323 3.28128005794005 4.35381827890854 4.2165461557043 3.28327931824936 4.51645183399271 0.233738115582492 0.236038404010209 0.238095253836386 0.226836935944533 0.226836935944533 0.247597294157874 0.232307178782966 0.227816421706352 0.230040620364447 0.230283789089877 0.230542533118247 0.228180027534295 0.231976639987635 0.235282978729619 0.236757042504921 0.226836935944533 0.232827426304823 0.227146240399148 0.235138285723879 3 3 - 17291420 17292363 17291885.333 17291415 17295842 - gene protein_coding_gene FALSE TRUE AT3G46920.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16270.1); similar to Octicosapeptide/Phox/Bem1p; Protein kinase [Medicago truncatula] (GB:ABE80960.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.103932448782088 -0.93895963990253 0.368127079951474 1 -0.182060760044773 8.38477714694155 -0.103932448782088 0.124367911374184
AT3G55130_at 9.6225385900801 9.99510179713358 8.79399464404222 8.88673242290431 9.76325701553916 9.2010021170132 8.9040092577521 9.09240523061367 8.70187236947558 8.78265271532849 8.80498459041511 9.21410164554572 9.01943904583365 9.2754780571265 8.38082441683474 8.61044175510344 8.5048480049702 9.0299689164568 8.97193679228099 0.157742966379846 0.156605510436604 0.158940563301718 0.152236659180201 0.162758501799102 0.160782681085587 0.166982923216959 0.152830031461749 0.166603426544715 0.15575326000258 0.152560749297968 0.146701167388434 0.155751376412371 0.152341506420895 0.154685899014505 0.154349485562146 0.166166315904346 0.152940534363155 0.151474875768256 3 3 - 20445106 20445651 20445403.182 20444855 20447367 - gene protein_coding_gene FALSE TRUE AT3G55130.1 ATWBC19 (WHITE-BROWN COMPLEX HOMOLOG 19); ATPase, coupled to transmembrane movement of substances Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. Identical to White-brown complex homolog protein 19 (WBC19) [Arabidopsis Thaliana] (GB:Q9M3D6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55110.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55100.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55090.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90508.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97036.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.103038495339691 -0.938267775132697 0.368466811381152 1 -0.182665664011304 18.1192958492502 -0.103038495339691 0.122249035042513
AT1G35610_at 1.12788220245281 1.40390541954595 1.25026636699881 1.45354773407252 1.24180618221196 1.32131318525326 1.6170468142642 1.40184502286624 1.94328323311925 1.53101236582268 1.60421289222473 1.36774849987769 1.20380894016133 1.55288199109943 1.74428646360649 1.31667233256452 1.86758662429938 1.41262910968074 1.3562269606901 0.205697145164356 0.202394167912023 0.198118367809428 0.198526770199253 0.201183870606976 0.198893672595944 0.200883009970558 0.202366330198458 0.203988817547393 0.203521370142647 0.204707641252599 0.198118367809428 0.204188978131623 0.199924952641297 0.202033120860146 0.198496497940001 0.208785002049141 0.206429053600261 0.218783540453109 1 1 - 13143138 13143682 13143487.273 13143128 13144966 - gene protein_coding_gene FALSE TRUE AT1G35610.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11385.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11390.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13760.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.0861911637514403 -0.938233489737968 0.368483652585227 1 -0.182695630335076 2.91165288757487 -0.0861911637514403 0.0713827529531966
AT2G24070_at 1.38387723398191 1.12477397745745 0.92676964150612 1.66204699988119 1.20503553486040 1.32636313919890 1.43285703270146 1.32489134152102 1.37978087626756 1.25322904475489 1.34712578106909 1.19871125492819 2.09629633019657 1.49856378904781 1.62014607846642 1.76241972031421 1.80116756004966 2.08312966794255 1.63023281067977 0.212646820362089 0.222649642653655 0.214552767211742 0.225068179328662 0.222122663449004 0.215613859234838 0.216298071884476 0.216503111543913 0.228684931442655 0.242763734116999 0.217778104363885 0.218269657012559 0.216452148420505 0.221071313189661 0.221090357931798 0.212646820362089 0.217586339862652 0.224283756711864 0.219987722411607 2 2 - 10238986 10239859 10239355.818 10238762 10242556 - gene protein_coding_gene FALSE TRUE AT2G24070.1|AT2G24070.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30710.1); similar to Protein of unknown function DUF566 [Medicago truncatula] (GB:ABE79495.1); contains InterPro domain Protein of unknown function DUF566; (InterPro:IPR007573) 0.109159022315298 0.93784395128605 0.368675034783312 1 -0.183036032545007 2.84683982929817 0.109159022315298 0.137808924719899
AT1G69810_at 2.04734844258084 1.89028874977053 2.01849776772304 2.24424280620342 1.66935956676917 2.25834262883558 1.43860744428058 1.24613976676483 2.23021310147106 2.13341514782178 2.30486383286839 1.64270863160180 2.13248213722668 1.81696664157803 1.94514646536321 1.90560251914327 2.18577441878007 2.01591909640645 2.18689673034319 0.212845655475938 0.221632264042055 0.214197447921991 0.217199751921469 0.215214626607578 0.217409874859810 0.212845655475938 0.212845655475938 0.213830992600173 0.217344325853484 0.213285656684103 0.213852971336099 0.216873715648675 0.217641657367300 0.216914584915487 0.212888914922011 0.212888734512628 0.215643440488020 0.214641627113055 1 1 - 26280905 26281489 26281154.909 26280901 26282781 - gene protein_coding_gene FALSE TRUE AT1G69810.1 WRKY36 (WRKY DNA-binding protein 36); transcription factor member of WRKY Transcription Factor; Group II-b Identical to Probable WRKY transcription factor 36 (WRKY DNA-binding protein 36) (WRKY36) [Arabidopsis Thaliana] (GB:Q9CAR4); similar to WRKY72 (WRKY DNA-binding protein 72), transcription factor [Arabidopsis thaliana] (TAIR:AT5G15130.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABE84469.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.101094616429627 0.93760610606084 0.36879192407349 1 -0.183243817757617 3.94019904382417 0.101094616429627 0.117316949320997
AT3G23250_at 1.80890199784950 1.39483606539395 2.09896497009758 2.22253800465132 1.55896514329469 1.70510103507907 1.70078472977174 1.43810244049094 1.75025689144567 2.13725143046429 1.70994559771291 1.58708509785809 1.65797381688880 1.65750050844096 1.81598623488524 1.74812481759382 1.66892584495263 2.08501431157114 1.7171936433707 0.215506104569904 0.214119412203847 0.214324813798405 0.215467703109756 0.212882380691164 0.229773009324894 0.221241730947917 0.212994776307875 0.221071837878342 0.214658288959515 0.214603170846875 0.212370550294755 0.218186854179445 0.213848776043258 0.218517842692081 0.210880478391794 0.210301453466544 0.216456220670305 0.213972851402138 3 3 + 8310087 8310603 8310372.364 8309216 8310833 + gene protein_coding_gene FALSE TRUE AT3G23250.1|AT3G23250.2 AtMYB15/AtY19/MYB15 (myb domain protein 15); DNA binding / transcription factor|AtMYB15/AtY19/MYB15 (myb domain protein 15); DNA binding Member of the R2R3 factor gene family. similar to AtMYB14/Myb14at (myb domain protein 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31180.1); similar to myb-related transcription factor LBM1 [Nicotiana tabacum] (GB:BAA88221.1); similar to myb-related transcription factor LBM2 [Nicotiana tabacum] (GB:BAA88222.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to ATMYB13 (myb domain protein 13), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G06180.1); similar to myb-related transcription factor LBM1 [Nicotiana tabacum] (GB:BAA88221.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0919107601075965 0.937255785459054 0.368964137473055 1 -0.183549782655960 3.54580105691102 0.0919107601075965 0.0910929529764026
AT1G15740_at 10.4953064669584 10.5134494882842 10.6783818035011 10.6683660271335 11.2847043069754 11.0341372874122 10.3550866364831 10.0571891032939 10.3301967829249 10.3313261861192 10.0126417914531 9.64132623157547 10.1966209512634 9.98354243744117 9.48856982894644 10.0388124113512 10.2127832539132 10.0797311030715 10.3818993782227 0.0933991386671364 0.0943387231294667 0.0976089186796065 0.0944552607742277 0.0940134810751908 0.0961623511425363 0.0926706829768413 0.0936293043932691 0.0998122556746407 0.091726244811321 0.0939128463078735 0.0918267518194897 0.0927813865882271 0.0931928360690357 0.101306042612877 0.0900021545627201 0.100901332296350 0.097847097202318 0.0901743213243573 1 1|0 +|/ 5413632 5414497 5414109.3 5410907 5414914 + gene protein_coding_gene FALSE TRUE AT1G15740.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G23840.1); similar to Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor subtype; Leucine-rich repeat, cysteine-containing subtype [Medicago truncatula] (GB:ABE93295.1); similar to OSIGBa0112M24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67587.1); similar to Os04g0503500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053240.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.0850427422693052 0.936914586275319 0.369131921819332 1 -0.183847688824423 20.7881081151132 0.0850427422693052 0.0674594197188184
AT1G53620_at 2.39199317903145 2.87366123203018 3.70682114802754 3.19160819996239 3.20026392663872 3.09453328186221 3.21518348633303 2.47495552649837 3.70745197453991 3.43253235749309 2.7959395218456 2.92757622779989 3.86235612114393 3.11599688504299 3.08425054779902 3.09367934851075 3.28043402600756 3.10354150877949 3.25380412942085 0.214941241974147 0.229289580218737 0.239639105232866 0.239519952430094 0.229849218457763 0.225872593900363 0.229592946464995 0.226833435522497 0.216316067845164 0.214941241974147 0.242826766201561 0.220187524790048 0.222780304110754 0.221298474150905 0.219508014375080 0.239233732199099 0.229646760407398 0.243389010588722 0.233641783434244 1 1 - 20015320 20015511 20015422.667 20015097 20015593 - gene protein_coding_gene FALSE TRUE AT1G53620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53610.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_799837.2) 0.126366951348830 0.936746974637188 0.369214364522607 1 -0.183993999744129 6.32991146114004 0.126366951348830 0.177881751411628
AT4G21820_at 0.451218927494323 0.233068144630478 0.260830762546815 0.338280654821639 -0.0434955647782786 0.405753681025119 0.608901688063257 0.287503730514664 0.830464049874606 0.476081697966712 0.506881531353093 0.812354522638928 0.475630366451315 0.302994741823326 0.660494294704023 0.109990138918831 0.45950000870195 0.228089971783581 0.138776147336408 0.172083003101373 0.174394996664946 0.173802265410981 0.173031529247267 0.182896023149800 0.177185430664906 0.172083003101373 0.186046861254794 0.174642299248608 0.173531014265979 0.182045900856795 0.176546842251921 0.174980195405844 0.173957117612392 0.177100201118564 0.176052855630440 0.176793171520028 0.175788838266149 0.182774540748257 4 4 + 11583086 11583633 11583374.909 11577536 11584065 + gene protein_coding_gene FALSE TRUE AT4G21820.1 calmodulin-binding family protein similar to abnormal spindle-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC56022.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.096056378642109 -0.936737602772955 0.369218974623377 1 -0.184002179948114 0.780890709092813 -0.096056378642109 0.103646566051783
AT1G01280_at 0.837103981913278 1.02502841843477 0.971329889595105 1.14218602629552 0.860206849527427 1.29757335634223 1.25833276087001 1.07635392581780 0.6340071623466 1.01526506391051 1.42303183108689 1.12690373981710 1.01400938765305 1.24668702365167 0.768622537461548 0.66042375069014 1.71183909485479 0.860137482512638 1.15635949130143 0.212819439820539 0.212807856536502 0.218719541771261 0.213907961783048 0.212867751801527 0.210971244026003 0.218198575343523 0.218214721048837 0.215961236109859 0.219644395970863 0.211908317257228 0.215302794447620 0.213550562339156 0.213606538654587 0.211737086922572 0.210971244026003 0.215018346034747 0.211877052087578 0.220111727753838 1 1 + 113410 113875 113626.182 112263 113947 + gene protein_coding_gene FALSE TRUE AT1G01280.1 CYP703A2 (cytochrome P450, family 703, subfamily A, polypeptide 2); oxygen binding member of CYP703A similar to TT7 (TRANSPARENT TESTA 7), flavonoid 3'-monooxygenase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT5G07990.1); similar to cytochrome P450 [Petunia x hybrida] (GB:BAA92894.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE91557.1); similar to putative cytochrome P450 family [Sorghum bicolor] (GB:AAL73540.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0924327710637862 0.936257883834679 0.36945500712311 1 -0.184420809469954 2.07684811534226 0.0924327710637862 0.0930179959385556
AT3G01990_at 2.61787939481687 2.55095796496845 2.65212916027750 2.22016679271412 2.29681880837800 2.28478921006547 2.71126136912147 2.26551146223825 2.9029047745232 2.28084912136615 2.71146944748745 2.96957348590308 2.37656854259560 2.51974841941954 2.71873563845734 2.68056588257049 2.982697327973 2.34808677633219 2.87286514171433 0.213242996898007 0.210548510459058 0.211265066439453 0.205205438349654 0.210637324127845 0.206141388699842 0.213067385534267 0.204230412849151 0.213633233503531 0.210991902019263 0.210229882320328 0.201839751657534 0.202751698431001 0.203616007850068 0.218702298804625 0.201387300937306 0.215521238985376 0.206949190273828 0.215573209962126 3 3|0 +|/ 331339 332009 331710.9 330144 332269 + gene protein_coding_gene FALSE TRUE AT3G01990.1 ACR6 (ACT Domain Repeat 6) Member of a small family of ACT domain containing proteins in Arabidopsis. ACT domains are involved in amino acid binding. similar to ACR4 (ACT REPEAT 4), amino acid binding [Arabidopsis thaliana] (TAIR:AT1G69040.2); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.0975177720181885 -0.935828194586755 0.369666514860501 1 -0.184795627483621 5.1244244549693 -0.0975177720181885 0.108059807394731
AT3G45860_at 11.7931844472045 11.9132997418257 12.2845717163306 12.1145684135723 12.0938867549742 11.6497460773336 10.1571009641314 10.0125734801653 11.3859678204197 10.4070869054642 9.87322475804459 9.66611195531967 10.6475510297651 10.5816360153618 9.27973120583123 10.1377224957254 10.1436180835849 10.1270269406355 11.0325501631754 0.0996825533565028 0.0937621160765915 0.099844444097516 0.0972271344774996 0.0959433501988686 0.106671836942748 0.0949367465422692 0.0937332176368194 0.099716050176886 0.0985395061938985 0.101436765243510 0.0946929808921142 0.097997858099477 0.0983233006906393 0.0968386491051904 0.0933659088806524 0.100262550980326 0.103928043400773 0.0933659088806524 3 3 - 16874415 16875135 16874654.727 16874386 16877026 - gene protein_coding_gene FALSE TRUE AT3G45860.1 receptor-like protein kinase, putative similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23310.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23270.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23280.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0909315482006787 0.93566337723677 0.36974766640594 1 -0.184939359365112 22.0018395028855 0.0909315482006787 0.0884913533651779
AT1G52360_at 5.49754446384782 6.29258951273986 5.70652192193453 5.60236296374417 5.51238161381617 5.08927575332557 6.1997552057712 5.83127172672274 6.159202801769 5.92701440257155 6.32885284544398 6.78753029738655 5.847204708506 6.34880781757628 6.35476734876418 5.93228330984773 6.21475688469132 6.19426937650979 5.96813363265609 0.218652127813617 0.214886559738076 0.222437167771241 0.228920675495620 0.222028844437359 0.221340227509327 0.219710205068032 0.220837905030147 0.223736357413955 0.21902628902836 0.225951705676636 0.215430975352114 0.220532211442535 0.22365879576492 0.217593140075255 0.215088390237768 0.236874785361554 0.217964818033872 0.220930519375086 1 1|0 +|/ 19508036 19509014 19508527.2 19502831 19509839 + gene protein_coding_gene FALSE TRUE AT1G52360.1 coatomer protein complex, subunit beta 2 (beta prime), putative similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT3G15980.3); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to Coatomer protein complex, subunit beta 2 (beta prime) [Rattus norve (GB:AAH88397.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.122356268070057 -0.93540773614693 0.369873562094858 1 -0.185162253645833 11.8510509048659 -0.122356268070057 0.169358933442318
AT4G22940_at 0.78143423908381 1.01105362806313 1.14677030826228 0.774065173308556 1.10157705688160 1.24154158714920 0.67883450462223 0.639751583938507 1.32586890499958 1.03854981884648 0.638078476265305 0.879106035141248 0.919197666020474 1.25974618794816 1.53861383339211 0.855827992061737 1.54595967080486 1.49006211820446 1.39326375275819 0.211031241497312 0.204912645454559 0.212685578518944 0.205892291878130 0.209782644782072 0.205685113898031 0.211014489523222 0.205700907257367 0.215771465669553 0.205054987734233 0.216767286146573 0.206857306886827 0.214307101736865 0.207467272656682 0.212288352151652 0.205123301277392 0.213557163728819 0.208584280933466 0.216385228245364 4 4 - 12021799 12022494 12022143.909 12021774 12023478 - gene protein_coding_gene FALSE TRUE AT4G22940.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G44290.4); similar to Os01g0367700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043043.1); similar to putative CRK1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD89473.1); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0882416072092674 0.934923059806665 0.370112334417311 1 -0.185584704103671 2.11857092167094 0.0882416072092674 0.0798214943238686
AT4G28110_at 1.34783398851471 1.21312567122398 0.711236181312687 0.879524969629024 0.753629806227365 1.20812019967503 0.727641332301364 1.10184629108382 1.02021420909218 1.45669011724849 1.17492910324143 1.35104143338952 1.25251254603020 1.35353146945676 1.01778407743756 1.38883328669862 1.36127162979119 1.24125727398506 1.28299133571326 0.204713758233281 0.203288213219114 0.202507649337059 0.198819417589097 0.198736582864383 0.200147898843250 0.197694859949863 0.204257045012704 0.206206390121134 0.200078441020324 0.202869310169548 0.197116067516359 0.203226190196753 0.202753863669936 0.198872187236526 0.202815820408428 0.21014775717276 0.199995975325353 0.199161111833267 4 4 - 13968220 13968717 13968491.818 13968035 13969390 - gene protein_coding_gene FALSE TRUE AT4G28110.1 AtMYB41 (myb domain protein 41); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB74 (myb domain protein 74), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G05100.1); similar to MYB18 [Malus x domestica] (GB:AAZ20434.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0975687415420626 -0.934825445563339 0.370160436607024 1 -0.185669763757044 2.25334163325688 -0.0975687415420626 0.108495519219588
AT3G47840_at 1.89832581879694 1.89520596348955 1.48975798063141 1.51191946647554 1.83292177518996 1.54097287285987 1.92496849810955 1.65665063922427 1.78900825650133 1.32734780986094 1.56251864533973 1.48023315938033 1.23506972324187 1.68646121653428 2.02807166104326 1.54451780353274 2.18966682105882 1.54507714173722 1.62182007156147 0.244244390660876 0.240310571174645 0.242125687032953 0.245999826343038 0.241221915169610 0.249122348262428 0.237483577432819 0.245903467146084 0.241447617208191 0.247593688884548 0.24087237159312 0.242970349870331 0.241267047224700 0.25721389285411 0.244087473278701 0.241651786034763 0.245469360894898 0.248700696437479 0.248092984077616 3 3 + 17664458 17664889 17664701.111 17662897 17665017 + gene protein_coding_gene FALSE TRUE AT3G47840.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53360.1); similar to hypothetical protein [Thellun (GB:ABB45851.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0851673653034654 -0.93468923320335 0.370227566529639 1 -0.185788444791356 3.33801241057619 -0.0851673653034654 0.0687289598313082
AT1G59630_at 1.38014568840097 0.95381656633533 1.22191755742682 1.04173375061254 0.943117904822841 1.37402654473404 0.952965136193012 1.20069946960173 0.73242487768651 1.29021505358424 1.25672064604438 1.05884562388092 1.37613316492565 1.14739121801458 1.27723898244168 1.01087126567513 1.29099904181855 0.938420563745813 0.950977851260978 0.199647625228965 0.20726476160805 0.210990011191829 0.202785332103172 0.201186901508311 0.206704826889866 0.205689534657765 0.210977946235981 0.215510864222618 0.206624516148762 0.197533041117487 0.204507109986513 0.198397705690104 0.197533041117487 0.207512479917502 0.201887887899637 0.216304472461484 0.200732746943404 0.199791307986313 1 1 - 21910863 21911458 21911197 21910842 21911620 - gene protein_coding_gene FALSE TRUE AT1G59630.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G58090.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.100831930037030 0.9344162712169 0.370362117160190 1 -0.18602623126179 2.21394457268037 0.100831930037030 0.117534222911502
AT4G15340_at 0.753010424102464 0.461870501169265 0.630330332566917 0.644713553112598 0.449719898824877 0.262435894434704 0.608523490998947 0.602642129561861 0.061161755350743 0.439735247967213 0.000767164209921658 0.00567772938977177 0.625378235529152 0.576740727205551 0.0454478899865675 0.690754392929441 0.778797594043492 0.417346118886258 0.845650011515547 0.213053651559234 0.211999062452603 0.205863091678791 0.212450629369108 0.206190884041414 0.220196659139646 0.210162086350223 0.208422573323060 0.230812495127556 0.218724856860491 0.212110738411192 0.212929908543773 0.220987861071977 0.205863091678791 0.224209353116004 0.216508007495918 0.210260044223296 0.208650865385592 0.220609269943412 4 4 - 8754680 8755431 8755074.545 8754480 8760589 - gene protein_coding_gene FALSE TRUE AT4G15340.1 ATPEN1 (Arabidopsis thaliana pentacyclic triterpene synthase 1); catalytic/ lyase pentacyclic triterpene synthase similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT5G48010.2); similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT4G15370.1); similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78500.1); similar to beta-amyrin synthase [Euphorbia tirucalli] (GB:BAE43642.1); similar to beta-Amyrin Synthase [Panax (GB:BAA33722.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) -0.082973495072671 -0.93423090042941 0.370453511408713 1 -0.186187680801891 0.972387146329964 -0.082973495072671 0.0599676786951218
AT1G10890_at 1.49858463560715 1.50497563304662 1.60607234703472 1.55329922125765 0.953564833924533 1.72517362922917 1.26461361139881 1.04415399442242 0.567807654418426 1.40471371490553 1.43730643545690 1.38776199069071 0.98989038343171 0.812579437690618 1.75138099799308 1.35944672053538 1.31249323683406 1.05855859026001 1.55735523297090 0.197568074384417 0.192673262216481 0.191196039965764 0.191139655506631 0.197728685537905 0.197083773783537 0.193195256800004 0.208174228859101 0.201745930535706 0.197218181335487 0.195082466021263 0.195611773700936 0.191908287538207 0.199794709048291 0.194176255415738 0.190598422951521 0.199138614261720 0.194237457816212 0.194625642354407 1 1 + 3631675 3632060 3631878.091 3627726 3632131 + gene protein_coding_gene FALSE TRUE AT1G10890.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G17200.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47085.2); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.109248614628021 0.933820865136887 0.370655729915331 1 -0.186544707344510 2.61395611734505 0.109248614628021 0.139178176314124
AT4G26340_at 0.524002379026285 0.721941687585015 0.871305496430014 0.829365794073793 0.467962590075897 0.559598627089144 1.10053729055501 0.660782927112792 0.76243598142476 0.678767307177874 0.426273793752961 0.757342943632948 0.779599191399669 -0.00257736595485986 0.894638452644603 0.738381676583914 0.99311792213495 0.796467007426278 0.906729626124121 0.19471291808673 0.19471291808673 0.200836750088077 0.200777251895148 0.199422820720270 0.199883836961560 0.197570386767433 0.202458344926702 0.200452766383499 0.201701926884021 0.202483841825286 0.201230753180730 0.204182781786383 0.197226070490878 0.203896172394719 0.199498668815957 0.202144012433661 0.202271536064232 0.200086197823671 4 4 + 13324711 13325543 13325166.455 13324139 13325599 + gene protein_coding_gene FALSE TRUE AT4G26340.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G26350.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92026.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.0897483981794617 -0.933753715335653 0.370688853872511 1 -0.186603163573231 1.44471197779923 -0.0897483981794617 0.0852581813866923
AT3G30710_at 2.68397392941602 2.35768538440656 2.66837397188708 2.56090095910508 2.01709409495648 2.13670734551565 2.35273399149153 2.70889657747264 2.94458249648493 2.62485640928538 2.62665214917932 2.78026939812720 2.84375508935042 3.06619031832704 2.8851335604918 2.96950516309706 2.95051835559279 2.96627391179723 3.09224146482331 0.254494230980071 0.254226557167957 0.261498586323017 0.263882679039836 0.256176522337736 0.257018294296090 0.263247181898401 0.260229585256930 0.261990366841093 0.261396361739854 0.274450821327288 0.261997102099610 0.253943780574743 0.259291008795497 0.252725127750573 0.252509663990378 0.256576264330401 0.254741815095553 0.260002121185128 3 3|0 -|/ 12294309 12295011 12294711.8 12294291 12296616 - gene protein_coding_gene FALSE TRUE AT3G30710.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G08113.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436) -0.0906214623915657 -0.93372742181535 0.370701824630970 1 -0.186626052031607 5.32242779850299 -0.0906214623915657 0.0881005946568427
AT1G19060_at 1.32627970067645 1.39586140701453 1.47701448563607 1.46926219927074 1.28581854697490 1.29157080089613 1.04578649998155 1.64820424498663 1.47875099279746 1.32596441133757 1.24963025069926 1.1181525067363 1.69596940137573 1.00216143204491 0.823710922623866 0.951201227096229 1.11906705307054 1.31992877635426 1.33307817558267 0.203443696075413 0.200898740726675 0.204084596780731 0.210446420964034 0.202985277758212 0.209226848138173 0.205677397808893 0.200898740726675 0.202241575110876 0.208444793736166 0.204468894913885 0.206094602438776 0.202819256784048 0.205430306320566 0.204604096502652 0.200898740726675 0.211921162269119 0.200898740726675 0.200898740726675 1 0|1 /|- 6582119 6582795 6582397.3 6582057 6583592 - gene protein_coding_gene FALSE TRUE AT1G19060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02770.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) -0.0962016426463815 -0.93370120620172 0.37071475727807 1 -0.186648872133314 2.63709584709098 -0.0962016426463815 0.104957609335050
AT1G60670_at 4.97312916135498 4.75803456273881 4.8423805700975 4.64677228964843 5.08814563546965 5.2454499218271 4.89963017910005 4.69536622941913 3.68418220699642 4.06476866529561 3.60236714302230 3.64448014704533 4.03385554383176 4.07601971679698 3.73563144068261 4.09894796378137 4.42718069488523 3.73549310673699 3.87307795694623 0.182617359049296 0.17883842901111 0.17883842901111 0.183676699243785 0.184413171040837 0.184772378223836 0.17883842901111 0.181209841322538 0.200556065235579 0.182839846401732 0.187970769767329 0.186192017747211 0.181182709058027 0.183282940790131 0.191515268880087 0.183739101786252 0.181981437338251 0.192188909737492 0.180233510047890 1 1|0 +|/ 22348333 22350765 22349907.222 22347320 22351289 + gene protein_coding_gene FALSE TRUE AT1G60670.1|AT1G60670.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26476.1); similar to Os04g0523100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053344.1); similar to OSIGBa0153E02-OSIGBa0093I20.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67876.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to Os04g0523100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053344.1); similar to H0322F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67770.1); similar to OSIGBa0153E02-OSIGBa0093I20.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67876.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.0846922154795806 0.933651593546666 0.370739232994349 1 -0.186692057359811 8.7902418583789 0.0846922154795806 0.0672460865084071
AT4G05250_at 1.68753616846416 1.81509456044198 1.86128213436406 2.28541821580029 1.28244367181810 1.85499863094702 1.75292137254665 1.84575431861789 1.93111841736647 2.56628340573988 1.72527759013527 1.98527753325336 1.77208593398192 2.18104443397144 1.73326662466474 2.40606379964938 1.57987563557482 2.50144663701085 2.22085912140089 0.197443442660357 0.203978818714225 0.195749592674971 0.204243670267133 0.194575444671892 0.199208092837426 0.193888523660126 0.193888523660126 0.203575600249046 0.200340251589181 0.195145357512233 0.195761574350349 0.211220158902767 0.199856400971078 0.207456247401061 0.200141362856830 0.19932569288497 0.198592788170347 0.200488962926025 4 4 + 2691815 2692348 2692130.455 2691458 2692414 + gene protein_coding_gene FALSE TRUE AT4G05250.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05240.1); similar to PREDICTED: hypothetical protein XP_686065, partial [Danio rerio] (GB:XP_691157.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.104084491545415 -0.933594558617251 0.370767371803062 1 -0.186741700906641 3.910662428308 -0.104084491545415 0.126294304359623
AT4G31060_at 2.8018787516907 2.8239660090014 2.32438479450665 2.35205680577360 2.72980901852922 2.53127210957091 2.05595358114454 2.38496229241751 2.81559471699234 2.83005019089242 2.75787633339820 2.64702734980807 1.93268191473631 2.76828472876934 2.94311783772884 2.61622320538910 2.82709650247521 2.61315705369116 2.67937970810811 0.200028901393345 0.192855347109785 0.194784671253361 0.203145898089352 0.193125197043268 0.196293547611403 0.191895197862318 0.193336468781191 0.199341224909167 0.191948482804947 0.195989852111397 0.189466998358555 0.195593768020647 0.189466998358555 0.190796555622969 0.190631241686487 0.199477826693241 0.200008052597714 0.194453057023964 4 4 + 15116920 15117411 15117193.909 15116803 15117762 + gene protein_coding_gene FALSE TRUE AT4G31060.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G19210.1); similar to dehydration-responsive element binding protein 3 [Glycine max] (GB:ABB36646.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.084567283024933 -0.933573924771365 0.370777552110626 1 -0.186759660103025 5.20713108086956 -0.084567283024933 0.0667814390251539
AT1G76020_at 7.71691583650726 7.72591547673496 7.09508531325652 7.44915368095435 7.88688838905915 7.35952700263412 8.97026778608066 8.99483910315646 7.44189803407616 8.2532238851611 8.78055047388062 8.72177759978759 8.56820784715047 8.6066777009395 8.5527332179765 8.54080916579643 8.52875046507306 8.9162803529851 8.13554460413329 0.1623596086286 0.164647822464391 0.167784329084530 0.162111152186435 0.158164380438032 0.164919802577002 0.160180327950135 0.160025728654456 0.174160904143205 0.158164380438032 0.159766191876086 0.160807396767193 0.158164380438032 0.166186549558391 0.158812920196917 0.158327772105067 0.158164380438032 0.15827171821235 0.158325616326154 1 1 - 28535906 28537075 28536593.545 28535758 28537228 - gene protein_coding_gene FALSE TRUE AT1G76020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20225.1); similar to unknown [Solanum tuberosum] (GB:ABB55396.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0979515544926621 -0.933272718600129 0.37092618349926 1 -0.187021784643828 16.1975885039174 -0.0979515544926621 0.110016933077594
AT1G31710_at 2.15711021012386 2.33569261845493 1.29461604208103 1.19143290077657 1.06850290746820 1.18658327244133 1.41814104307902 1.64003706358895 1.71479802984160 2.24601517296998 3.32407753728275 3.62364534716138 2.69034867157531 3.75655598828614 3.69592115158885 2.77000610119884 2.51530521087401 3.27211970034256 3.05755637797702 0.210464641505244 0.209814918495129 0.215174684481122 0.217678868934669 0.215848461062997 0.219459121243045 0.210139206604047 0.212302010192723 0.22441610303711 0.215230853753416 0.220008430702637 0.224420937279591 0.210464977198428 0.214850387408236 0.224336275368509 0.211928486680246 0.210564028594371 0.211684551771698 0.217473887060884 1 1 + 11350042 11355281 11352619.909 11349821 11355467 + gene protein_coding_gene FALSE TRUE AT1G31710.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31670.1); similar to ATAO1 (Arabidosis thaliana amine oxidase 1), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G14940.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G31690.1); similar to Amine oxidase [copper-containing] precursor (GB:Q43077); similar to copper/topa quinone amine oxidase precursor [Lathyrus sativus] (GB:CAH10210.1); similar to copper amine oxidase [Pisum sativum] (GB:BAA77206.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) 0.0820397417446431 0.933115371139335 0.371003844031222 1 -0.187158687942687 4.30924150248587 0.0820397417446431 0.0562678540609272
AT4G08140_at 0.828021237757984 1.50273579360608 1.49421678306654 1.93504293430070 0.994012692332685 1.11748146908281 0.817817920740616 1.58034682348042 1.39261865191298 1.26179018769003 1.29659568226000 1.49259417344612 1.49893317845798 1.42422703412272 1.26864249434954 1.38230601100010 1.22276437527693 1.36099645034550 1.26242042224752 0.182543435133136 0.182002557334831 0.182566107834015 0.186771236360953 0.184796187979535 0.184710805224083 0.182002557334831 0.182002557334831 0.184019110064488 0.186598328069935 0.182002557334831 0.182958724373152 0.185040404765462 0.188185818925338 0.182002557334831 0.185194056159651 0.182494053834425 0.185319124263863 0.185039530761298 4 4|0 +|/ 5135686 5136094 5135915.333 5135670 5136137 + gene protein_coding_gene FALSE TRUE AT4G08140.1 similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A), binding [Arabidopsis thaliana] (TAIR:AT2G20580.1); similar to Proteasome/cyclosome, regulatory subunit [Medicago truncatula] (GB:ABE89010.1); contains domain 26S PROTEASOME REGULATORY SUBUNIT RPN1 (PTHR10943:SF1); contains domain 26S PROTEASOME REGULATORY SUBUNIT (PTHR10943) 0.132865348378299 0.932845615625384 0.371137011591693 1 -0.187393348978144 2.62070554622475 0.132865348378299 0.193191509441947
AT1G76880_at 3.6800252344489 3.44892815771398 3.12185636897079 3.57399993842676 3.63574439220166 3.2255085100175 3.8026010695016 3.31213263222053 3.88049117470242 4.06635422550819 4.37451663357434 4.56095885994799 4.4547975057654 4.68512094373003 4.60507171018905 4.43479676556108 4.16208068198000 3.97357412017894 4.09732943141594 0.204100296814781 0.192762542215802 0.194245737577051 0.196381578112562 0.199020370063257 0.202229664493705 0.196684477829357 0.191833000995784 0.199595908364676 0.192368955861543 0.191684626903622 0.204285007680992 0.195174120874731 0.195122389797421 0.208911377854149 0.194912051783598 0.199459711011165 0.1925043733443 0.200901648685376 1 1 + 28872228 28872763 28872564.273 28870488 28873119 + gene protein_coding_gene FALSE TRUE AT1G76880.1 trihelix DNA-binding protein, putative similar to GT2 (GT2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G76890.2); similar to DNA-binding protein DF1 [Pisum sativum] (GB:BAB41080.1); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.109997618836634 0.93279323499929 0.371162873750598 1 -0.187438908412722 7.6856443361834 0.109997618836634 0.141301271876978
AT4G18860_at 0.79750988550664 0.699789629991908 0.656494421245494 0.779966163264373 0.551768431443087 1.10226435118046 0.611817668810663 0.788700434348834 0.71571986850032 0.299300134835961 0.608062861145373 0.639091477825639 0.695402452697477 0.58679474488724 0.878838389309205 0.523967500112542 0.863852286380466 1.07939489167428 0.758729080027975 0.205735557960342 0.204755179992704 0.215555041734591 0.208202573864751 0.208054786400871 0.214514034473453 0.209105050550718 0.204755179992704 0.215768485841182 0.212806799011596 0.216567606172111 0.212082146169056 0.210533324806201 0.208971021246029 0.210054276066316 0.206390234207316 0.212592260789919 0.212951023018446 0.209626569328716 4 4|0 +|/ 10344700 10345562 10345184.2 10344698 10345599 + gene protein_coding_gene FALSE TRUE AT4G18860.1 unknown protein 0.0956724090840587 0.932789056101108 0.371164937074758 1 -0.187442543027308 1.41137650820332 0.0956724090840587 0.103706938638759
AT4G15475_at 7.62224140353959 7.31755565622712 7.3573359661165 7.4464623609458 8.22101839224985 7.59643603398223 7.34260518428924 6.91919610793243 7.06829707680224 7.25131468698444 7.02794108164228 7.16076527946086 6.77139663507723 6.91224543184198 6.54899923417897 7.6918688629772 7.52884035159574 7.43758386713439 7.48934332829045 0.201373275658947 0.193421621104049 0.199643067972448 0.197035635137167 0.192418805806547 0.196771825991947 0.205459649596838 0.199375420317617 0.199450626080509 0.191467649607089 0.194300659335185 0.195517220328221 0.192051423316646 0.206006857093479 0.208490840218075 0.191467649607089 0.21504535262616 0.196312830124222 0.192821559602278 4 4|0 +|/ 8847875 8848659 8848381.6 8845873 8848867 + gene protein_coding_gene FALSE TRUE AT4G15475.1 F-box family protein (FBL4) similar to EBF2 (EIN3-BINDING F BOX PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT5G25350.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95013.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.110108497978023 0.932456205797168 0.371329307488098 1 -0.187731997049241 14.6801597833342 0.110108497978023 0.141667761650037
AT2G11490_at 0.91659770519352 0.77961773437932 1.04579039025239 0.976101619284143 1.18179703710825 0.656615401148381 0.160153914337269 1.02025849571464 0.346715837235412 0.885430818923036 0.713783378371326 1.11831200729008 0.674670067593994 0.952669177568643 0.155799354661274 0.818451436171124 0.545308982365219 1.14253686783835 1.05049026394640 0.348028451139755 0.319714685869177 0.318170153060673 0.315726965952916 0.315726965952916 0.315726965952916 0.331480023817659 0.340676454989253 0.334258289044375 0.315726965952916 0.315726965952916 0.315726965952916 0.376698705854368 0.315726965952916 0.345321750399317 0.315726965952916 0.386343294381623 0.346241954175096 0.315726965952916 2 2 + 4611605 4611965 4611783.5 4611375 4612042 + gene protein_coding_gene FALSE TRUE AT2G11490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28980.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35090.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.125115792578161 0.932378119489634 0.371367876073641 1 -0.187799890063683 1.60515172835263 0.125115792578161 0.176415261667371
AT2G18650_at 3.52686361737256 3.72440081489711 3.16160232192817 3.14318796400881 2.66515818669013 2.94216397776272 2.90495957008883 3.45485227731917 2.90387713667200 2.81431438959865 3.38885086843513 2.94088184550512 2.95631851891828 3.54740720901577 2.81155322678221 3.05710872482377 3.41963142311262 3.02362828266477 3.02825257383338 0.228618787637622 0.231837144005347 0.224405754732121 0.228633614111575 0.234210597971702 0.247455278442048 0.224405754732121 0.235343796533764 0.232105248304778 0.230044924084975 0.229829975044924 0.231283093284377 0.224405754732121 0.228612329036648 0.225512078196071 0.232638478771041 0.241431176812890 0.236488049192434 0.23694870793932 2 2 - 8093942 8094507 8094119.727 8093942 8095213 - gene protein_coding_gene FALSE TRUE AT2G18650.1 MEE16 (maternal effect embryo arrest 16); protein binding / zinc ion binding Identical to Putative RING-H2 finger protein ATL2C (ATL2C) [Arabidopsis Thaliana] (GB:Q9ZV53); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G30400.1); similar to RING finger 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36516.1); similar to Os08g0445000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061924.1); similar to Os02g0790600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048356.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0985249058080472 -0.932091646511495 0.371509395844009 1 -0.188048926273037 6.21972553081271 -0.0985249058080472 0.111948342503309
AT1G30600_at 1.26747802316854 1.45471731450192 1.74750998980959 1.25288125465101 1.00442287826524 1.65879311484469 1.53195141341215 1.43889672332837 2.08820577319621 2.25884678961292 2.32335587824394 2.59194104199488 2.06827631986379 2.48914744093713 2.53847941564086 2.03473423523325 2.63651129018951 2.24765971726817 2.05745351767353 0.187547476865896 0.189691343874033 0.189935984163844 0.193038863293228 0.185692474538515 0.195611900407616 0.191970911642233 0.189228324040005 0.187045365694299 0.195554256811015 0.184400382198224 0.188151020298730 0.188618012908591 0.189451972636940 0.191320784586081 0.189393509889998 0.191996933047456 0.197531970534682 0.187665343408865 1 1 - 10841336 10841993 10841609 10841124 10845032 - gene protein_coding_gene FALSE TRUE AT1G30600.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G19170.1); similar to Os06g0700000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058476.1); similar to Os01g0769200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044371.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.112034374025222 0.931843039995822 0.371632240274144 1 -0.188264992333874 3.67013060278885 0.112034374025222 0.146492149755091
AT1G25390_at 8.21466513376614 8.47072815158334 7.98950407146199 8.04990305246775 8.01272626294323 8.00592416895003 6.99376982807674 7.3124340230992 7.09296139935296 6.96559979210258 6.31019696720057 6.82462807182596 6.68364049699482 6.39180285099847 5.73825511634352 7.08774793187348 7.19407935046793 6.52017044943066 7.03639933475746 0.223919738695198 0.228200022014100 0.220435657140596 0.226980272671932 0.220369474084498 0.232586579668909 0.225952704552071 0.225576062209445 0.221622828560686 0.21893724023958 0.224101461213596 0.227305660745247 0.225381859102425 0.222423031757011 0.236918883689962 0.222943299540955 0.219137695955062 0.227808982343842 0.226862939159259 1 1 - 8906627 8907193 8906922.909 8906439 8908841 - gene protein_coding_gene FALSE TRUE AT1G25390.1 protein kinase family protein similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38210.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041957.1); similar to Os05g0550800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056244.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.085611624760674 -0.9315214830639 0.371791174525807 1 -0.188544388357521 14.6939411681083 -0.085611624760674 0.0715219335936512
AT1G15050_at 2.61215562554053 2.40401261558281 2.57214108102019 2.52796981119282 2.33226977983091 2.60881602314788 2.56887563508859 2.91612404463258 3.33250284157821 3.26792481924286 3.0099918728528 3.30110272897407 3.29696969359731 3.11773255215397 3.69056131823828 2.81685715722138 3.10743989560956 3.10962668299991 3.13539661089519 0.210620488314128 0.213614323461168 0.221906253768955 0.221114069978067 0.216601900342889 0.210559254936428 0.215558428616069 0.212521940955354 0.21647323859229 0.213234543615562 0.211323736441829 0.218534536745420 0.216879938360482 0.221786543742976 0.225052538154644 0.215132101291852 0.218725421875948 0.210976258982032 0.210559254936428 1 1|0 -|/ 5182255 5182947 5182721.889 5182251 5183238 - gene protein_coding_gene FALSE TRUE AT1G15050.1 IAA34 (indoleacetic acid-induced protein 34); transcription factor Belongs to auxin inducible gene family. Identical to Auxin-responsive protein IAA34 (Indoleacetic acid-induced protein 34) (IAA34) [Arabidopsis Thaliana] (GB:Q9C5X0;GB:Q9M9Q0); similar to IAA32 (indoleacetic acid-induced protein 32, maternal effect embryo arrest 10) [Arabidopsis thaliana] (TAIR:AT2G01200.2); similar to Os02g0817600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048522.1); similar to Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) (GB:Q59AA1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.0894911629730116 -0.931291668120915 0.371904793451088 1 -0.188744021454485 5.78107557447687 -0.0894911629730116 0.08519034764444
AT3G57690_at 3.71173217679272 3.54807307710709 3.80074288119168 4.11914665688244 3.60450078898292 4.25105846432115 3.25373325319118 3.3374145668633 5.8743587433269 3.46233083376757 3.48681624600614 3.10894104622891 3.6620327399456 3.64161957008352 3.47356804947646 3.31426925759784 4.15592101237638 3.68957786367961 3.43500618280691 0.236212259278208 0.244204061641203 0.236212259278208 0.236212259278208 0.236212259278208 0.238582295830081 0.248729158843459 0.241400699001862 0.271047420822374 0.245630451315911 0.248995354135585 0.242440936680363 0.238529555676596 0.249411919361529 0.240042208307801 0.238361672474141 0.239278322515473 0.242754178520331 0.243712428692272 3 3 + 21395254 21395407 21395305.667 21395181 21395549 + gene protein_coding_gene FALSE TRUE AT3G57690.1 AGP23 (ARABINOGALACTAN-PROTEIN 23) Encodes a putative arabinogalactan-protein (AGP23). Identical to Arabinogalactan peptide 23 precursor (AG-peptide 23) (AGP23) [Arabidopsis Thaliana] (GB:Q8S2W4;GB:Q9SVY3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41905.1); similar to pollen-specific arabinogalacta protein BAN102 [Brassica rapa] (GB:AAD21078.2) -0.104757383718424 -0.931171479169725 0.371964223835593 1 -0.188848409365177 7.61521280473728 -0.104757383718424 0.128714128633842
AT4G11940_at 0.677062221390901 0.860433078371532 0.829966912553389 1.05287685742800 0.96114539377661 0.841485287430548 1.10430635939518 0.766642238291384 0.99834399171348 0.659036642960323 1.09576935275843 0.274856602672152 1.12636324769866 1.15448890645078 0.93391076888663 0.532687469743144 1.11146735625203 0.709473027199539 0.625572485333686 0.221624460438337 0.217816238817664 0.217816238817664 0.220500917417026 0.220795085615224 0.220344499366275 0.218396763769091 0.220906978149247 0.218045743385773 0.218001474020794 0.217816238817664 0.22085316018063 0.218956000775476 0.219347832318888 0.218186971050244 0.217816238817664 0.224477883452477 0.225896683478666 0.221136533613646 4 4 + 7168388 7168936 7168653.818 7168167 7168961 + gene protein_coding_gene FALSE TRUE AT4G11940.1 similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT4G11930.1) 0.087825178278364 0.931145487713233 0.371977076835504 1 -0.188870982278407 1.70092052597644 0.087825178278364 0.0796144210025218
AT3G47836_at 9.2193773358609 9.37686884825768 8.62183628187893 9.03893972186272 9.2343894411248 8.93919745135752 8.85419322399751 9.37529473376995 9.20063625678063 9.18545893869892 9.56395557207936 9.5293875003763 9.16560863196375 9.14843706720726 9.13124017941855 9.24148390761551 8.65003870400343 8.89235134644625 8.99590294084942 0.154226783548078 0.145755611682718 0.173132882994400 0.154265106239596 0.149246256639135 0.168635555576942 0.157036408468726 0.1505264767657 0.162205674331963 0.151660649221158 0.149109608563933 0.150101824513385 0.151864814254963 0.161835719120918 0.150876271466085 0.149350826169133 0.171909134506690 0.157629933560641 0.153122839781859 3 0|3 /|- 17661350 17661452 17661400.667 17661245 17662750 - gene protein_coding_gene FALSE TRUE AT3G47836.1|AT3G47836.2 unknown protein -0.104931329943186 -0.930994616563496 0.37205169013615 1 -0.189001999537466 18.228834917638 -0.104931329943186 0.129208683656497
AT2G47910_at 9.32383032201443 9.24871143316092 9.0342977293607 9.25941189883908 9.79892306847326 9.65645267437128 9.3849209806933 9.39574201683425 9.07442112761608 9.27239161181973 9.05817418572197 8.4722546682589 9.02765223326156 9.00973718549998 8.98708504251665 9.02471953147961 9.26612174962723 8.68607681989766 9.25528877562233 0.121300584869681 0.116590062256585 0.122681111848972 0.118553196408598 0.120293895483291 0.119022432068136 0.116118524500553 0.118443650641414 0.128459798779151 0.124742382069708 0.121637397347328 0.129157803445135 0.117458640514408 0.121511968124182 0.131441684671557 0.120784115833493 0.127066206096820 0.125612922549524 0.119588363052787 2 2 + 19621962 19622589 19622350.364 19621768 19622839 + gene protein_coding_gene FALSE TRUE AT2G47910.1|AT2G47910.2 CRR6 (CHLORORESPIRATORY REDUCTION 6) similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80941.1) -0.0801263367005398 -0.930766342232784 0.372164603318438 1 -0.189200200160918 18.4588753564946 -0.0801263367005398 0.0479377489396116
AT4G31630_at 0.800681607718765 1.00514866897071 1.13948988244445 1.03816954230630 0.81437335071883 0.923763860471947 0.708525547910219 0.90578196968471 1.04117292017516 0.633749824898503 0.660128749662592 0.885205649387631 0.724618177829464 0.841886132627425 0.938165695348462 0.935374707762473 1.29422446853010 1.31853182223941 1.05624786617678 0.215637212438808 0.212384342473715 0.212296013456384 0.210303224505515 0.214178035509811 0.208255151565152 0.208288970657485 0.225395814048534 0.213182540437998 0.2101280053473 0.213064909491762 0.210311666593116 0.215476937006729 0.210624618715634 0.213106279966726 0.209811664410228 0.212914740739672 0.222194082025640 0.218742595302586 4 0|4 /|- 15325411 15325976 15325709.8 15325349 15327226 - gene protein_coding_gene FALSE TRUE AT4G31630.1 transcriptional factor B3 family protein similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT4G31615.1); similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT4G31620.1); similar to reproductive meristem gene 1 [Brassica oleracea var. botrytis] (GB:AAC18082.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.0816457160437898 0.93047113371376 0.372310660683194 1 -0.189456456198528 1.84707036836504 0.0816457160437898 0.0555257343492128
AT2G39690_at 1.31211507222184 1.35299960778098 0.97482209969299 0.79195939990931 1.03392842256562 0.984346197537602 0.905549075093002 0.885712459418247 1.16549731040399 0.72583579773686 1.01840549673450 1.50174123889268 0.767628078715645 0.821007130479486 1.50920983237072 0.417135337640496 0.869689788817588 0.862538140079645 0.98444156482854 0.169654714098208 0.171658273946382 0.174674489461289 0.171401603594733 0.172021371299902 0.169120780047609 0.170526232768041 0.172489418242865 0.175554447345882 0.175985131626119 0.172145207738439 0.173332505718136 0.182899520498903 0.171770733995819 0.187421645212732 0.173393426242573 0.1805234037715 0.169120780047609 0.173090461636410 2 2|0 +|/ 16549550 16550316 16549883.6 16548104 16550456 + gene protein_coding_gene FALSE TRUE AT2G39690.1|AT2G39690.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12540.1); similar to At3g12540-like protein [Boechera stricta] (GB:ABB89771.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.0777511004461276 -0.930365578075086 0.372362895240124 1 -0.189548067276834 1.99493451083885 -0.0777511004461276 0.0337177819475082
AT3G49460_at 1.07017946454791 1.07763165726105 0.86059443363657 1.36559595907037 1.04659728797966 1.10696815440938 0.9773203249209 1.49374957369740 1.0595924119801 1.50809250413181 1.28900476042603 1.26478557326402 0.83534253033204 1.12974870546511 1.64058420395376 0.76624298201198 0.667624772985897 1.3983498456984 1.24519791262682 0.18185340987122 0.184538531325057 0.184250422668171 0.185576286464222 0.176552984040501 0.187957244293597 0.176552984040501 0.184202098627915 0.183331476895621 0.184181481810659 0.180806785544656 0.176644119229094 0.179090025400137 0.181917399048918 0.179077903483023 0.179985446640329 0.177993290899644 0.190059414461575 0.179047577897413 3 3|0 -|/ 18351340 18351571 18351417.143 18351336 18351601 - gene protein_coding_gene FALSE TRUE AT3G49460.1 60S acidic ribosomal protein-related similar to 60s acidic ribosomal protein P1, putative [Arabidopsis thaliana] (TAIR:AT5G24510.1); contains domain 60S ACIDIC RIBOSOMAL PROTEIN P1 (PTHR21141:SF6); contains domain 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER (PTHR21141) -0.103390908739286 -0.930333789656485 0.372378626860792 1 -0.189575654533582 2.32229028928044 -0.103390908739286 0.125440865189855
AT3G10460_at 2.09173777749117 2.50252516130003 2.09089135562053 2.03825677587183 2.05485013295258 2.52641240198852 2.22104181260680 2.04932188058415 2.65595550944180 2.26865242397904 2.42855036247023 2.06981363534427 2.8263646469176 2.34030571926978 2.16004856826159 2.38395514537699 2.52752027961307 2.27106678009002 2.67896447732289 0.244462085434613 0.243378104588395 0.238957193358183 0.242546889285295 0.238957193358183 0.238957193358183 0.246624187652392 0.252441244060534 0.249406435807975 0.24913084472994 0.243108244880357 0.246514210241857 0.252336744767689 0.24883279632703 0.249427078832078 0.238957193358183 0.250317394755068 0.244675188032331 0.263907028017588 3 3 + 3255876 3256163 3256017.364 3255805 3256444 + gene protein_coding_gene FALSE TRUE AT3G10460.1 self-incompatibility protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04347.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) -0.0985624930669038 -0.930203870097815 0.372442927030704 1 -0.189688395662543 4.65211830184321 -0.0985624930669038 0.112602001173420
AT3G61670_at 5.969775625208 6.53737655786248 6.32123513607828 6.43918181475341 6.36917103138164 6.75078914607468 5.44808311825476 5.4816065128344 5.84456477098217 5.39110618874949 5.41034056125655 5.94017340886339 4.97817390637772 5.17286596846346 5.47564692505315 5.29055613698005 5.15680336827076 5.3975288954378 6.04701412123689 0.178473360281471 0.181786204545974 0.181522615404018 0.178341792026665 0.186133446320634 0.192744071526693 0.183387157936263 0.185235263541316 0.187910125266581 0.184239096446954 0.186043405972816 0.179677824003841 0.180120733854800 0.190641026084749 0.191358889888020 0.181853301793873 0.182627637808525 0.183488393081674 0.184112607864923 3 3 + 22832032 22832675 22832363.636 22829564 22832995 + gene protein_coding_gene FALSE TRUE AT3G61670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46380.1); similar to unknown [Striga asiatica] (GB:ABE66402.1); similar to Os02g0258300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046475.1); similar to Os06g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057757.1) 0.101374973940218 0.930017342580175 0.372535257521956 1 -0.189850236683589 11.7214804544696 0.101374973940218 0.120249762580734
AT4G38700_at 4.20144442329665 3.86918137551224 3.90707078215903 3.80985509684732 4.15430318741375 4.21752115007804 5.25987723163366 4.74663786149264 4.74384724376190 4.33277895788863 4.94171948538651 4.46306061715959 4.82792488752203 4.97825528359658 4.60574395581541 4.81495340267264 4.97573220797603 4.8941521191918 4.45067421304175 0.205311071628965 0.202155998251289 0.208606589691483 0.201169062899377 0.215176537094501 0.209108712902871 0.206129852721335 0.210791689348860 0.199901203630575 0.200904734627480 0.205901479929533 0.199901203630575 0.211499485494245 0.205065201408282 0.210017710465585 0.202446048248998 0.20260294816002 0.205691638846639 0.212220506495411 4 4 - 18076591 18077076 18076870.273 18076453 18077171 - gene protein_coding_gene FALSE TRUE AT4G38700.1 disease resistance-responsive family protein similar to disease resistance-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G21110.1); similar to dirigent-like protein pDIR12 [Picea glauca] (GB:ABD52123.1); similar to Os03g0809000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051654.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) -0.0967525310874733 -0.929732900671938 0.372676086498593 1 -0.190096980778222 8.93163283012708 -0.0967525310874733 0.107692403145626
AT2G24420_at 9.92400169827368 10.1381651289435 10.1046081021189 10.1645506114513 10.7515271044121 10.2352410423082 10.8387171491938 10.5251558940190 9.05192745976113 10.0007068560670 9.6900271829059 9.39605780026181 9.82859215940275 9.68228278365774 9.34352249002502 9.34843132646317 9.44883178346875 9.12080204463083 9.85518449055366 0.129255084307861 0.12471428635708 0.127404090231562 0.126836072208796 0.128443654448207 0.132642799279366 0.127358492717274 0.128300981574548 0.158706035009498 0.131174555338652 0.130379959214296 0.12471428635708 0.12471428635708 0.126204887258401 0.138493727242708 0.128417570331699 0.150194385498817 0.136244141448262 0.129073323814547 2 2|0 +|/ 10388638 10389634 10389069.333 10387106 10390485 + gene protein_coding_gene FALSE TRUE AT2G24420.1|AT2G24420.2 DNA repair ATPase-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93369.1); contains InterPro domain Apolipoprotein/apolipophorin; (InterPro:IPR013326); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.0980747041550654 -0.929732227661208 0.372676419755116 1 -0.190097564517814 19.8943748655797 -0.0980747041550654 0.111392779848419
AT3G18300_at 3.14673044347856 2.70291402374003 2.99488025017252 3.16627077873613 3.16825539301799 2.91095560785673 2.81462530310592 3.17239591470306 3.00104859217688 3.21175101417379 3.21549360591249 3.44098034709252 3.33524945453562 3.27615879950973 3.17966650033454 2.92144767735344 3.10974806837506 3.07119511279414 3.08095868951283 0.174255459423447 0.174473623933398 0.176961771925334 0.174255459423447 0.179033225959039 0.175133933546503 0.178763231601015 0.176065118740031 0.182539018073624 0.177107742230784 0.180989734281853 0.174255459423447 0.174255459423447 0.175563670148830 0.178010724487078 0.174255459423447 0.181021899026527 0.183364142414428 0.188437389459424 3 3 + 6283675 6284183 6283979.364 6283402 6284226 + gene protein_coding_gene FALSE TRUE AT3G18300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48780.1) 0.0983735499864453 0.929709140030077 0.372687852246880 1 -0.190117589487559 6.15545940319784 0.0983735499864453 0.112225745028097
AT4G09930_at 1.05504076462631 0.753717076495028 0.967244243498752 0.707209999902127 0.734654701031522 0.81394164113027 0.723141122794772 0.753073366857185 0.612738493303537 0.746047176257283 0.866142010896253 0.569793038891595 0.788446095578543 0.732495399431421 1.12983889919429 0.792891570640894 0.989302301300321 0.923434520256644 0.631000566677292 0.207352613986931 0.195346889551318 0.204569911634905 0.210393558058965 0.196635178620234 0.207108006835007 0.205760159067468 0.200735972351484 0.218507457534404 0.203476970909709 0.209237202461691 0.196335504960246 0.196458070084821 0.197711163348702 0.202139481349466 0.195117188298548 0.208048018176934 0.212193913661097 0.199155956012371 4 4|0 +|/ 6229198 6230020 6229525.3 6228553 6230076 + gene protein_coding_gene FALSE TRUE AT4G09930.1 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT4G09940.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703) 0.085150232237526 0.929665072608006 0.372709674162958 1 -0.190155810038365 1.56965539367689 0.085150232237526 0.0704220074324348
AT1G34150_at 4.05882580610124 3.85675774770819 4.20565074071619 3.28806254779727 3.685551188124 3.67101977672754 2.92658194031623 3.21734588157433 4.05499738402428 3.82479627250794 3.33398863831618 3.46080239533709 3.4488849935791 3.6736400349506 3.1861330182119 3.57918387912902 3.51232751455234 3.42480050997619 3.80256754828695 0.228463186174214 0.207510501926614 0.219611983792604 0.216792525859463 0.212895741587658 0.217229735976400 0.209395509397758 0.213030532555432 0.227290991321276 0.215823546674691 0.208077325876726 0.211589523456146 0.214069841345515 0.212087844742412 0.212359488666983 0.222430900991726 0.212110997776475 0.215925547450078 0.227410487219325 1 1|0 +|/ 12437863 12438830 12438449 12435932 12439477 + gene protein_coding_gene FALSE TRUE AT1G34150.1 tRNA pseudouridine synthase family protein similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G06950.1); similar to Os03g0381100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050239.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_417852.2); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) -0.121978529591792 -0.929590723719768 0.372746493324645 1 -0.190220290851071 7.2870197159396 -0.121978529591792 0.170224085382317
AT4G23080_at 1.81271981750011 2.05692069983175 2.02521368388611 2.25559027966719 1.43577822888995 1.90213266626327 1.44984681513168 2.19966036875829 2.34992696488291 1.90871967643246 1.61392512319525 2.03120457944110 1.90785855891263 2.04928184198185 1.58104051262911 1.93799125807672 1.95326925221435 1.95683228305262 2.16672679369517 0.203777746247929 0.197433631180827 0.193596247096807 0.197761329679289 0.211806180753445 0.193142558545289 0.218680788308099 0.195127063982603 0.200887019764804 0.198391171680801 0.197072199989683 0.193142558545289 0.193142558545289 0.198760018399674 0.207153471173574 0.196415184715938 0.197875364933609 0.198965732271844 0.199821583468031 4 4|0 +|/ 12097550 12098626 12098011.7 12096797 12098899 + gene protein_coding_gene FALSE TRUE AT4G23080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10220.1); similar to ZmEBE-2 protein [Zea mays] (GB:CAD24798.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.118986964722194 -0.929392998398838 0.372844423664250 1 -0.190391751646501 3.90259110558678 -0.118986964722194 0.163480727574198
AT3G10550_at 4.56940171837223 4.62296138289056 4.66368204358189 4.45044428426879 5.44747715268637 4.60452439914807 4.88037764441542 4.84829934106761 5.4760394926243 5.27587177197467 5.33143778961935 5.35300609802231 4.9117913288405 5.41955831540202 4.42966767864507 5.5265399551296 4.76667332578493 4.80315107921853 5.31649447221653 0.191285289515215 0.190584729257408 0.200127151460434 0.201052938818723 0.187133384462948 0.18824777696887 0.191053494130921 0.192086057887822 0.192258233277787 0.189914974518822 0.191268928671024 0.191735927443819 0.187133384462948 0.203615625140646 0.199794400789175 0.189683785264513 0.199029185712190 0.192462002194275 0.190136639125450 3 3 - 3293221 3293849 3293428.636 3292904 3296874 - gene protein_coding_gene FALSE TRUE AT3G10550.1 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase similar to inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT5G04540.1); similar to myotubularin related protein 2 [Danio rerio] (GB:NP_571446.1); similar to Os08g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062478.1); contains InterPro domain Myotubularin-related; (InterPro:IPR010569); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) -0.113567550518775 -0.929373623903418 0.372854020536114 1 -0.190408550910914 9.97282771677284 -0.113567550518775 0.150859339078557
AT2G02515_at 1.71599083003012 1.83471261639217 2.00228294230004 2.0168032460329 1.99948547069942 1.9658864826971 1.89352138214892 2.16571691532797 2.06703347260535 1.51205288662807 1.8010256897509 1.90302319292956 1.75406918052976 1.91141563962310 1.76919511525120 2.07470867895278 1.74471326176179 2.05834527511652 1.84858934122077 0.203659245825442 0.202109448176527 0.205282825121088 0.20276922538581 0.198261513354246 0.204345068371478 0.201734210142127 0.209126198179492 0.205035775673069 0.211799016422356 0.200658977278231 0.200313725510099 0.202247052862393 0.204663635695236 0.207117298529868 0.201374450780216 0.207470259553932 0.201286312719446 0.207067603789817 2 2 + 675283 675514 675394.727 675255 675655 + gene protein_coding_gene FALSE TRUE AT2G02515.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02490.1) 0.0807329351061454 0.92902790077379 0.373025298803555 1 -0.190708271452463 3.79244360456567 0.0807329351061454 0.0517792168840284
AT3G53580_at 8.57568641115043 8.82525570908482 8.58435857177753 8.50143476722008 8.41224117367698 7.9922433084014 8.4130883201743 8.45625777019931 8.10087558220467 8.11057823063018 8.43520740887815 8.83409625956036 8.24187097158156 8.22036584696388 8.64554311675438 8.42615935479616 7.60633008657532 7.16477941591738 8.3311696933411 0.175051168718091 0.167249610727177 0.172444023032309 0.169731750248872 0.169344949531980 0.183956375915603 0.170041846260363 0.167249610727177 0.185197618974035 0.170781204295075 0.178409666232319 0.168558471431793 0.174800558065824 0.182209712361047 0.168886315179077 0.172523307608675 0.198253488634757 0.176131773448925 0.167249610727177 3 3|0 +|/ 19876735 19877858 19877347.1 19875742 19878112 + gene protein_coding_gene FALSE TRUE AT3G53580.1 diaminopimelate epimerase family protein similar to Diaminopimelate epimerase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22051.1); similar to Os12g0567200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067060.1); contains InterPro domain Diaminopimelate epimerase; (InterPro:IPR001653) -0.0895415209067338 -0.929001652340118 0.37303830508473 1 -0.190731023385690 16.6589050338041 -0.0895415209067338 0.0860802148462119
AT2G24340_at 1.19261103174973 1.47739148035029 1.10923878056327 1.51289912952428 1.35659003902010 1.47492786728752 1.16699578750801 1.66546759067662 1.83432559423737 1.93132385519986 1.77364797171101 1.65603964725125 1.56482726493787 1.59128815073316 1.54708612021991 1.52902977802597 1.94324655813730 1.31572190969872 1.65704036923132 0.186767995411122 0.186060568158607 0.187162643289731 0.195690413706522 0.185636030716925 0.195078571116924 0.186203013700856 0.184544998536487 0.189079521392036 0.199317253446631 0.185654989956581 0.186668654260575 0.186910143014845 0.187052396699477 0.184544998536487 0.187767457200226 0.197142343360962 0.190324656572098 0.184544998536487 2 0|2 /|- 10362780 10363328 10363064.3 10362510 10366626 - gene protein_coding_gene FALSE TRUE AT2G24340.1 transcription factor similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT2G21230.2) -0.102327433136242 -0.928622612236638 0.373226157859068 1 -0.191059512010099 3.08085231232443 -0.102327433136242 0.123163329015966
AT1G75660_at 8.2372603003687 8.01165256635766 8.18659203503228 8.01537548515807 8.27773762884459 8.39314518436726 7.86946353058418 7.80857891913739 8.02742785287007 7.77338561034244 7.34635195729064 7.37749088552969 7.40420534524884 7.62813818717949 7.48693674526769 7.59489233646136 7.63710879571729 7.74845337828608 7.97924900393723 0.129900550948926 0.126543572247866 0.137809934384398 0.135584756061770 0.128013837195340 0.137777344599673 0.126543572247866 0.136287753906019 0.129857429921900 0.132261001160487 0.129889876867454 0.13024535462468 0.131756943239628 0.135950385510696 0.132100432483835 0.132283592409176 0.135899146641049 0.139168676800955 0.12773812967326 1 1 + 28418001 28418335 28418159.455 28411808 28418778 + gene protein_coding_gene FALSE TRUE AT1G75660.1 XRN3 (5'-3' exoribonuclease 3); 5'-3' exoribonuclease Encodes a putative exoribonuclease. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to 5'-3' exoribonuclease 2 [Gallus gallus] (GB:NP_001026204.1); similar to Zinc finger, CCHC-type; Putative 5-3 exonuclease [Medicago truncatula] (GB:ABE84268.1); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.0811332654693537 -0.928428295549158 0.373322487407905 1 -0.191227869494411 15.8272930526925 -0.0811332654693537 0.0539641484566103
AT1G07290_at 1.42678858229410 1.62641581506305 1.80661847304187 2.16136663741014 1.88466773038549 1.60827141562832 1.64637478330906 2.25427927324837 2.00457492242534 1.97369896660496 1.9817204789692 1.90261897053609 1.63590712691742 1.84284801605540 1.45339730701926 1.56320765198705 1.50934696095225 1.98533825709807 2.24728758353314 0.190152214596205 0.187435073620312 0.19398389314658 0.199612828080101 0.184495406188114 0.193860599831731 0.189712732591667 0.194391313363051 0.186328296076157 0.190982278803451 0.183690952550863 0.18328582856652 0.195703850598819 0.189595838845794 0.203416352071896 0.18328582856652 0.194229974557981 0.204284364075093 0.190989004256675 1 1|0 -|/ 2242256 2243755 2242797 2242255 2244427 - gene protein_coding_gene FALSE TRUE AT1G07290.1 nucleotide-sugar transporter family protein similar to GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G13650.2); similar to GONST2 Gol (GB:ABF99644.1); similar to putative lipophosphoglycan biosynthetic [Oryza sativa] (GB:AAK82435.1); contains domain SOLUTE CARRIER FAMILY 35 MEMBER D (PTHR11132:SF13); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132) -0.107061305345746 -0.928349165892228 0.37336171977285 1 -0.191296419544723 3.70659046565405 -0.107061305345746 0.135341591028744
AT1G04620_at 5.47413483366732 5.63898134716303 4.36039675007249 4.65703169318206 5.80526864273266 5.70034571718155 6.48804283107802 5.80581029771055 3.61089996195503 4.53608156401781 4.17891924775351 4.94971527080846 4.0854701179355 4.55477245664959 4.37401711867042 4.88019062487012 4.46501286583086 4.54135354974695 3.83813367934676 0.268267301849635 0.263670236220789 0.274163617659118 0.26279473113343 0.263441347768830 0.284996359914985 0.26077566703921 0.271939982251183 0.267145972655230 0.264604618466636 0.264942203313021 0.262851994362041 0.271368515839512 0.266117705998223 0.275193599286545 0.263540899714335 0.271015055114837 0.264569597594435 0.268290944655038 1 0|1 /|- 1283808 1284954 1284454.125 1282740 1286583 - gene protein_coding_gene FALSE TRUE AT1G04620.1 coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family similar to OSJNBb0026L04.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01504.2); similar to OSJNBb0026L04.9 [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL54311.1); similar to coenzyme F420 hydrogenase/dehydrogenase beta subunit-like [Trichodesmium erythraeum IMS101] (GB:YP_720646.1); contains InterPro domain Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; (InterPro:IPR007525); contains InterPro domain Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; (InterPro:IPR007516) -0.106169310926283 -0.928340170609 0.373366179805337 1 -0.191304211850487 9.74061141825165 -0.106169310926283 0.133107805935110
AT2G27880_at 1.30608491005847 1.16146685985635 0.93073294237798 0.771485148269568 0.991268432720009 1.08876244427366 1.08706871293841 0.692644453066281 0.0589534206517719 1.5334658554975 0.915453533330394 0.884921543855101 0.469916004782009 0.94425280557127 0.896729075685638 1.19913475201953 1.34153030135028 0.673831415619168 1.33112582179876 0.232917110999530 0.237110428610643 0.238811741666509 0.235732284147503 0.232418556475366 0.233284314968133 0.234506475076687 0.241167511209162 0.234928599361110 0.236674676402217 0.236612678429971 0.232418556475366 0.239738759712508 0.235753385939733 0.232418556475366 0.233522779028804 0.235011456393193 0.245032472957647 0.241770303241765 2 0|2 /|+ 11882999 11883722 11883389.667 11878565 11883971 + gene protein_coding_gene FALSE TRUE AT2G27880.1 argonaute protein, putative / AGO, putative Identical to Argonaute-like protein At2g27880 [Arabidopsis Thaliana] (GB:Q9SJK3); similar to AGO1 (ARGONAUTE 1) [Arabidopsis thaliana] (TAIR:AT1G48410.1); similar to ZLL (ZWILLE) [Arabidopsis thaliana] (TAIR:AT5G43810.1); similar to AGO1-1 [Nicotiana benthamiana] (GB:ABC61502.1); similar to putative leaf development and shoot apical meristem regulating protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68386.1); similar to putative argonaute protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37538.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) -0.0875239228461224 -0.928123509558025 0.373473615859059 1 -0.191491878694959 1.9488073437831 -0.0875239228461224 0.0795580717464859
AT2G44880_at 0.633719976557633 0.868581480652383 1.04431947095218 1.20925743806945 0.912346537279824 0.756717302999613 0.504191186452446 0.696750207542004 1.28002557102228 0.90003190593292 0.88598491989979 0.579510394417627 0.986887410534717 0.981385263157086 0.761535061061965 0.636255124182072 1.30559970287903 1.11782971612571 0.952878347645539 0.169595047226504 0.173068783943676 0.183882844867746 0.174516428811997 0.169595047226504 0.179232169136659 0.170330435656691 0.171441390840638 0.180997946443083 0.169980965135330 0.171854568461701 0.169595047226504 0.177375744420571 0.175997970153955 0.169595047226504 0.170669900476322 0.176056948893981 0.173068648194478 0.185639151996311 2 2 + 18513383 18513933 18513711.091 18512314 18513981 + gene protein_coding_gene FALSE TRUE AT2G44880.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G29230.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to Asp/Glu racemase [Medicago truncatula] (GB:ABE92336.1); similar to Asp/Glu racemase; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE89255.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0837054910114108 0.927334049292001 0.373865271709511 1 -0.192175379076072 1.80382814534611 0.0837054910114108 0.0655929442360085
AT3G53350_at 2.58830503243456 2.35423201391682 2.78123751717696 2.61270388530949 2.69003973094779 2.48167406632832 3.41747328204588 2.98780418495311 3.22178242027218 3.35420520544742 3.76660725729074 3.66917468374826 2.78871275690614 3.73704224480784 3.44029581021156 3.53692907085814 3.14332990250689 3.20032223913956 3.62443373901691 0.172910440318425 0.1745135809147 0.174941184290005 0.181735141007042 0.179329999809984 0.174767012525666 0.17999256976548 0.17336141646376 0.176760953346942 0.178607337103280 0.177449972479112 0.175981620651181 0.176150829747152 0.171429350666456 0.172916077584428 0.171429350666456 0.183741903743299 0.176239880334878 0.181113269201153 3 3 - 19791181 19791728 19791410.364 19791031 19793658 - gene protein_coding_gene FALSE TRUE AT3G53350.1|AT3G53350.2|AT3G53350.3 myosin heavy chain-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT2G37080.1); similar to P70 protein [Nicotiana tabacum] (GB:CAC84774.1) -0.0926892688127419 -0.927244395795317 0.373909767685794 1 -0.192252968478880 6.14440481443702 -0.0926892688127419 0.096543030426079
AT2G44920_at 9.92595569482811 9.73354948038284 9.7388789676988 9.52933326861523 10.1443217502147 9.86832580343973 10.0382662752911 9.83877373735151 9.65808422882393 9.73676603609515 9.79604607784023 9.86560586003528 9.7637430459509 9.86695761049338 10.1125365788697 10.0540485814434 9.96694992528362 9.77659601939164 9.59465315132203 0.096148841530951 0.0961420243663921 0.103633089537452 0.101746121381588 0.0961420243663921 0.102742520768428 0.0989342441765099 0.0981271352528796 0.107886587577734 0.0974861353118678 0.0962628359057962 0.0962938182795267 0.098754022356587 0.0961420243663921 0.101118843282345 0.0966458092476452 0.0998413311225649 0.0975324243374914 0.099743578733151 2 0|2 /|+ 18531973 18533355 18532633.429 18531462 18533902 + gene protein_coding_gene FALSE TRUE AT2G44920.1|AT2G44920.2 thylakoid lumenal 15 kDa protein, chloroplast Identical to Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) [Arabidopsis Thaliana] (GB:O22160;GB:Q949R8); similar to FIP2 (FH protein interacting protein 2), voltage-gated potassium channel [Arabidopsis thaliana] (TAIR:AT5G55000.1); similar to hypothetical protein BL107_13840 [Synechococcus sp. BL107] (GB:ZP_01468001.1); similar to Os01g0144100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042002.1); similar to hypothetical protein NAS141_07590 [Sulfitobacter sp. NAS-14.1] (GB:ZP_00964231.1); contains InterPro domain Pentapeptide repeat; (InterPro:IPR001646)|Identical to Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) [Arabidopsis Thaliana] (GB:O22160;GB:Q949R8); similar to thylakoid lumenal protein-related [Arabidopsis thaliana] (TAIR:AT1G12250.1); similar to hypothetical protein BL107_13840 [Synechococcus sp. BL107] (GB:ZP_01468001.1); similar to Os01g0144100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042002.1); contains InterPro domain Pentapeptide repeat; (InterPro:IPR001646) 0.0866106537642743 0.926765268569979 0.374147627041033 1 -0.192667515531955 19.6339147561414 0.0866106537642743 0.0767903793573794
AT4G08840_at 1.56706036907082 1.29027269623757 1.69538666168611 1.47142314652854 0.932918347625857 1.00155720921281 0.767609179438749 1.26747311105715 1.46393543617571 1.81475030252351 1.31960382104242 1.00485815380298 1.44159813721229 1.48197837885788 0.879596002055865 1.20549826862557 1.75341131160402 1.51996036765204 1.43230196703872 0.214283642669587 0.223302292510605 0.211229767046494 0.211229767046494 0.211924998104154 0.211702144717514 0.215044091436854 0.212566658935905 0.217593727470057 0.215952478264351 0.221205637945804 0.213339473649772 0.220559505544249 0.217693946218318 0.219751150551327 0.219819290022616 0.215276471603796 0.218923129758436 0.215141456500330 4 4|0 +|/ 5632789 5633568 5633251.6 5631295 5633609 + gene protein_coding_gene FALSE TRUE AT4G08840.1 APUM11 (ARABIDOPSIS PUMILIO 11); RNA binding similar to APUM9 (ARABIDOPSIS PUMILIO 9), RNA binding [Arabidopsis thaliana] (TAIR:AT1G35730.1); similar to Os03g0191700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049234.1); similar to Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] (GB:CAL57619.1); similar to Os12g0493900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066803.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.0961493389135463 -0.926726796853793 0.374166730691997 1 -0.192700793929732 2.69728373528351 -0.0961493389135463 0.106866868930242
AT4G03750_at 2.07209505210377 2.08414582441509 2.67292500385096 2.6026198805876 2.06915775422639 2.01020838459559 2.52702219475205 2.01833854368758 2.52942101038159 2.18066819144974 2.69190470452616 2.37322765500988 2.33014223745673 2.47651438077469 2.00771010146540 2.16526084807021 2.44875264532612 2.35160384084483 2.30472036293206 0.188593111722271 0.187137903737169 0.190060102238429 0.200129787556851 0.184420514020211 0.184544676400663 0.186943126914442 0.182481106103159 0.185392974316605 0.190745632095496 0.182481106103159 0.185570348262411 0.190713398754555 0.190412458337929 0.186314149499757 0.184426796979868 0.193260679461742 0.192589698284534 0.182867977554897 4 4|0 +|/ 1667214 1667775 1667450.429 1667202 1668886 + gene protein_coding_gene FALSE TRUE AT4G03750.1 similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16900.1) 0.090348524419318 0.926513773098635 0.374272522993954 1 -0.192885040428286 4.60401878308007 0.090348524419318 0.0894748035393985
AT4G22300_at 3.12429654975638 3.37900644793739 2.56471912211864 2.51688497885071 2.97208438291565 2.83708807725136 2.93570181361773 3.04732873249045 1.92141331826787 2.24912008484023 2.42382400592305 2.73318734545980 2.70077021301290 2.68442999818859 2.97193848685554 2.38545435089692 2.77625741421397 3.061322907772 2.29829343226807 0.220642153857695 0.215655137677236 0.21434161491903 0.209999612469708 0.221707536017755 0.216243835279368 0.213151755113199 0.210489079423969 0.227997054418756 0.210394834902862 0.208710686428624 0.214737885683114 0.213147007276710 0.216849048655212 0.212503104466071 0.209191593528931 0.210203114155114 0.220417674161018 0.211462807257167 4 4|0 -|/ 11788037 11789133 11788697.889 11787325 11791067 - gene protein_coding_gene FALSE TRUE AT4G22300.1 carboxylic ester hydrolase encodes a carboxylesterase that inhibits AvrBsT-triggered phenotypes in Arabidopsis similar to phospholipase/carboxylesterase family protein [Arabidopsis thaliana] (TAIR:AT3G15650.1); similar to OSJNBa0043A12.21 [Oryza sativa (japonica cultivar-group)] (GB:CAE02816.1); similar to Os04g0669500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054204.1); similar to H0818H01.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86085.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Phospholipase/Carboxylesterase; (InterPro:IPR003140) 0.0809916164159448 0.926400117606377 0.374328975467644 1 -0.192983327668391 5.35885061415849 0.0809916164159448 0.0541331499858075
AT2G32750_at 0.46313881162045 0.868983020029298 0.595453471729649 0.666926328629956 0.568092872853224 0.735308331123348 1.06862556584869 0.638524824052335 0.741530337459566 1.10099320574903 1.05084427629532 0.959566818126535 0.858130455159754 0.298032837150388 0.857205665613778 0.667956498659765 0.987684155754862 0.650846683123358 0.753301231743057 0.206689599560388 0.211633057435173 0.206348075413520 0.20755995674842 0.208829232626947 0.206029590871909 0.214853362128095 0.212492128646023 0.216231525602303 0.208780141609804 0.208448485747633 0.208280911315171 0.215867630426596 0.212703162171029 0.212324212520595 0.208836181532276 0.206509393215293 0.229769024729247 0.21171464625386 2 2 + 13897684 13898095 13897811.455 13896718 13898247 + gene protein_coding_gene FALSE TRUE AT2G32750.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT2G32740.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE92010.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.0961821527760308 -0.926371000051265 0.374343439071695 1 -0.193008506375594 1.52891082759554 -0.0961821527760308 0.107065544153474
AT2G07190_at 0.89150878686287 1.34489040310186 1.40803183515768 1.21315961596887 1.37415506013342 1.55784561624143 1.18110985738615 1.44113823055572 1.27436525537652 1.72743966480545 1.35269344012696 1.15394037616934 1.79260599865761 1.55212683480162 1.63750122438518 1.44694562205315 1.96866462555806 1.58012621136753 1.63501861534495 0.190783011972405 0.186561914628821 0.187096301489297 0.187697667324161 0.186083149380109 0.190755369976784 0.192342323689649 0.187159726762423 0.202699426951020 0.186150078448969 0.193113701154738 0.184940651132329 0.184940651132329 0.194335494996972 0.191048087489670 0.184984938157842 0.190260914668177 0.190113541121881 0.185260562917728 2 2 + 2988309 2988877 2988583.091 2987364 2988942 + gene protein_coding_gene FALSE TRUE AT2G07190.1 similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT3G30450.1); similar to hypothetical protein 27.t00109 [Brassica oleracea] (GB:ABD65088.1) 0.0943019544314952 0.92635610174115 0.374350839682909 1 -0.193021389073999 2.85457161908378 0.0943019544314952 0.101629958886709
AT3G45090_at 2.77704951774199 3.04840833166555 2.84050147839289 2.70996509569627 1.80104319796593 2.29527478175125 2.19584223200330 2.3302212642492 3.08538600113604 2.72821481802379 3.16435116963049 3.22810204772621 3.21296695640981 3.54057002663824 3.38933354494097 3.09161229682373 3.50550059681850 3.0251371159179 2.89878002303782 0.187929843258847 0.190451891940451 0.193744727415077 0.194255161139918 0.197991350491401 0.187929843258847 0.198208062952438 0.187929843258847 0.190482021192336 0.198902191193894 0.194011885302048 0.187929843258847 0.189391171227644 0.188996617741587 0.197162726450041 0.194316004635507 0.197798868761209 0.194792527378206 0.191140943868518 3 3|0 -|/ 16501785 16502473 16502034.1 16501585 16505747 - gene protein_coding_gene FALSE TRUE AT3G45090.1|AT3G45090.2 2-phosphoglycerate kinase-related similar to 2-phosphoglycerate kinase-related [Arabidopsis thaliana] (TAIR:AT5G60760.1); similar to Os09g0572200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063996.1); similar to Os02g0819400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048534.1); similar to hypothetical protein DDBDRAFT_0203344 [Dictyostelium discoideum AX4] (GB:XP_644586.1); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) 0.0946927870002967 0.92621352148591 0.374421670463298 1 -0.193144670632900 5.58670007081452 0.0946927870002967 0.102818056611847
AT2G45130_at 1.88036436955055 1.92522003512833 2.31881050631965 1.87280449205844 1.80105249239484 2.16277929460693 1.8736875302986 2.00261160960442 2.54452613204975 2.13913583053421 2.25766078125431 1.98591649759160 2.55733855421254 2.51744080102057 2.09389130364566 2.10939161115838 2.33438750119766 1.88713069378232 1.75866858469753 0.195502663820903 0.195531736459105 0.195419397255348 0.200846744204707 0.203774041947399 0.193464778789547 0.205734669988620 0.203634178764901 0.201256115977368 0.200978125431446 0.199271684080406 0.194547738990933 0.206241677702027 0.202309187388139 0.199671014248341 0.195424258072821 0.198650438532290 0.204894301881537 0.205838684526501 2 2|0 +|/ 18613718 18614773 18614530.9 18613485 18614928 + gene protein_coding_gene FALSE TRUE AT2G45130.1 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G20150.1); similar to Os03g0406100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050332.1); similar to Os10g0392600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064515.1); similar to putative ids-4 protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16501.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331) 0.0944210062109377 0.925799121841548 0.374627588972117 1 -0.193502889188148 4.16233540811691 0.0944210062109377 0.102146399370622
AT4G32050_at 3.94776540357842 3.8442623908307 3.74994463010157 4.12531576793274 3.89061124281166 3.15988723952285 3.78788734700046 3.80706874677073 3.18187138563988 3.11525641840881 3.12609487146982 3.18496593546450 3.11188646352448 3.06318168119559 2.46970119124877 3.11883589788447 3.29488278291513 3.46324601139324 3.32922010466653 0.243951107881203 0.244649921617753 0.230179860624909 0.235439776852492 0.227442447517879 0.248274423221254 0.235244550836312 0.23859452196972 0.234811141020882 0.230189964844442 0.240094731179721 0.228197186593035 0.226495106338049 0.232991220708228 0.227033772756830 0.226495106338049 0.242019946556196 0.230630481559273 0.229298488725492 4 4|0 +|/ 15498688 15499919 15499281.857 15496543 15500853 + gene protein_coding_gene FALSE TRUE AT4G32050.1 neurochondrin family protein similar to Os02g0798700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048404.1); similar to PREDICTED: similar to CG2330-PA [Tribolium castaneum] (GB:XP_975616.1); contains InterPro domain Neurochondrin; (InterPro:IPR008709) -0.109994766902138 -0.925741736733267 0.374656110397344 1 -0.193552483821161 6.94553384138134 -0.109994766902138 0.14332665368587
AT4G27190_at 0.482116838582421 0.0510865493001916 0.504951023351486 0.160520737656954 0.376471209001918 0.151450009573246 0.48131493773388 0.216869853208058 0.945978128188385 0.258224530078650 0.786526097252552 0.97800151565575 0.931766685810185 0.949319422564645 0.706636420155572 0.779066917963173 0.937944807500376 0.737690505804565 0.730925088511818 0.217157520713385 0.217305307256007 0.220943498262453 0.217157520713385 0.227898761497961 0.220479037619481 0.222717795736398 0.217157520713385 0.229068265465730 0.228031343112567 0.224050732815583 0.220382011813585 0.228612743707816 0.222356969257889 0.221434369492188 0.221115305020238 0.22247762678317 0.223966764867654 0.231227983514127 4 4 - 13621004 13621513 13621272 13620983 13623940 - gene protein_coding_gene FALSE TRUE AT4G27190.1 disease resistance protein (NBS-LRR class), putative Identical to Putative disease resistance protein At4g27190 [Arabidopsis Thaliana] (GB:Q9T048); similar to disease resistance protein (NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G27220.1); similar to RPS2 protein [Brassica oleracea] (GB:AAF19803.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.0981638322592489 0.925711123922161 0.374671326139319 1 -0.193578939645259 1.05105345922500 0.0981638322592489 0.112815857076113
AT1G70110_at 0.842874556383734 0.699921312929998 1.03055002568825 0.822462191296603 0.64911449013193 0.803693297059497 0.616897359037748 1.12906528123881 0.921535301302315 1.27843648391664 0.824023524188344 0.451477082538449 1.03411813773715 1.18104436575122 1.15838099547677 0.827848958382883 1.22559980180832 1.22926258722917 0.22054929025051 0.218627467450789 0.220382033152714 0.232753194426264 0.220849754145728 0.224343751113313 0.225786202021648 0.23214605487758 0.221341975354341 0.231660186333347 0.222712129964127 0.230672160372124 0.224697977133118 0.220815443967928 0.220211361852164 0.224158522063349 0.224616624508449 0.228155813626429 0.236794874453938 0.221350019578675 1 1 - 26409909 26410554 26410225.273 26409901 26411986 - gene protein_coding_gene FALSE TRUE AT1G70110.1 lectin protein kinase family protein similar to ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT3G59700.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G29050.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70130.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.0944472233978588 0.925299625643964 0.374875898940609 1 -0.193934488024016 1.72347720928525 0.0944472233978588 0.102372733418444
AT2G41070_at 1.94616032450692 2.10566056485867 2.02734344977285 1.92767010271077 1.72879185596001 1.92725420406718 1.63767158295128 1.548424789761 1.82536684477787 1.89397463566394 2.37905721323311 1.98968535441738 2.15364339215100 2.07837605667305 1.632685433681 2.09479299125780 2.17632841974204 2.34011167235486 2.39736894659914 0.195652301254666 0.20330617318202 0.202241430675977 0.203206208552868 0.200143268581234 0.204537768446224 0.195940468366141 0.201835708729294 0.207529130639545 0.199195646239006 0.198727639126921 0.198812416809620 0.195182797436348 0.197453218252632 0.20967782860732 0.196900759833535 0.205614561091285 0.220577277246700 0.201560784478326 2 2 + 17138520 17139248 17138868.364 17137852 17139464 + gene protein_coding_gene FALSE TRUE AT2G41070.1|AT2G41070.2|AT2G41070.3 EEL (ENHANCED EM LEVEL); DNA binding / transcription factor Transcription factor homologous to ABI5. Regulates AtEm1 expression by binding directly at the AtEm1 promoter. Located in the nucleus and expressed during seed maturation in the cotyledons and later in the whole embryo. similar to AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G56850.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABD28662.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0799835893083514 0.9249995528214 0.375025127264846 1 -0.194193677053236 3.92836638050813 0.0799835893083514 0.0497746238194313
AT1G19540_at 1.92422686121274 1.93338979144376 1.69650506108812 1.70290492540891 2.32845832251551 2.38836807130655 1.68419042353489 2.16183100001693 2.07311332746877 1.81142874470789 1.49783643112120 1.61398693959890 1.71987036664763 1.36528835931014 1.58458247139202 1.52454891260210 2.13270434409868 2.24595240027949 2.08658235597037 0.194072706309643 0.193508749794853 0.191696185174103 0.195934010144096 0.198194201507889 0.19928553152538 0.199546626163712 0.191185317995062 0.195624843502185 0.195322578743284 0.190882500517150 0.190882500517150 0.201263600716477 0.19503920906886 0.194800313055254 0.196893895708779 0.20498222082115 0.196373932607629 0.190882500517150 1 1 + 6766468 6767123 6766732.818 6765658 6767332 + gene protein_coding_gene FALSE TRUE AT1G19540.1 isoflavone reductase, putative similar to isoflavone reductase, putative [Arabidopsis thaliana] (TAIR:AT1G75280.1); similar to allergenic isoflavone reductase-like protein Bet v 6.0102 [Betula pendula] (GB:AAG22740.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.0883144776116911 -0.924842032166199 0.375103480179181 1 -0.194329707750382 3.82796985082273 -0.0883144776116911 0.0833280427853592
AT3G08010_at 9.69970943136622 9.84609790119084 9.58750965361915 9.61212309807809 9.93480512632095 9.59790519439127 10.1436079954345 10.1144040775807 9.56326942328048 9.79388124721073 9.88471365293998 9.78058793756773 9.639837121405 9.83652257491835 9.68821042002853 9.95205822762265 9.72955441246187 9.61297335595626 9.6343134812769 0.115363753750564 0.114327274300223 0.121784812690262 0.113447824491241 0.111107849998154 0.117764336424677 0.115002996840304 0.120911023534615 0.120500970081944 0.111368001649251 0.111107849998154 0.115197958314226 0.118424330451256 0.114982084148256 0.115361756835695 0.111107849998154 0.124910543463604 0.114368271383706 0.112065514198379 3 0|3 /|+ 2556792 2557398 2557081.222 2555977 2557511 + gene protein_coding_gene FALSE TRUE AT3G08010.1 ATAB2; RNA binding Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. similar to Tab2 protein [Chlamydomonas reinhardtii] (GB:CAE17328.1); similar to Os02g0610800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047402.1); contains InterPro domain Protein of unknown function DUF1092; (InterPro:IPR009472) -0.0830666271754308 -0.924812426419739 0.375118207769848 1 -0.194355272314781 19.5317096081403 -0.0830666271754308 0.06391080912887
AT3G15810_at 9.65987614652534 9.87348837636868 10.1973551519651 10.3803316437790 10.4356980324395 10.0285592218292 10.3230335663152 10.2592173254846 8.97568246156185 9.38189593106457 9.10758531774109 9.05604073076263 9.43084531832733 9.53206286679535 8.6364571818173 9.54836568749999 9.4663446715261 9.12510409167651 9.51545819305442 0.150191593458181 0.139052272191504 0.141424859931920 0.143721499339813 0.139397624660139 0.148389205524102 0.139235250195139 0.139831439021540 0.1532550065762 0.139336817234408 0.151052803487335 0.139951578043314 0.135558905421016 0.140270821530281 0.156114345771999 0.138075780093311 0.151021147099133 0.143293817128440 0.139173859280542 3 3 - 5348071 5349040 5348504.727 5347833 5349295 - gene protein_coding_gene FALSE TRUE AT3G15810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80120.1); similar to Os01g0771000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044381.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16702.1); similar to Os05g0510100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056006.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.08921034843553 0.924732080376667 0.375158178541751 1 -0.194424647652854 19.4091263973359 0.08921034843553 0.0863445844215937
AT2G32290_at 5.31463480466541 5.81055140644177 6.49180239454456 6.68698471905218 6.09563586675912 5.2118205047934 9.11851358145539 8.62392841620918 4.95575423149977 6.47826122285507 5.62327298572596 5.27308351126487 6.8183423151425 7.07089202800469 5.00298656317488 8.43802124779307 8.20834461865478 5.90420088668853 5.71035691683026 0.231421576781835 0.241892489221981 0.236242411805807 0.238383442559815 0.230563802655289 0.2482394920057 0.234519843574015 0.233716721829795 0.247262183529197 0.232706127310868 0.234917083883939 0.230563802655289 0.238631590726478 0.238344232713718 0.239266344029968 0.231018732762020 0.240491062683716 0.245845313288516 0.240195501884644 2 2 - 13721743 13722469 13722036.818 13721624 13724006 - gene protein_coding_gene FALSE TRUE AT2G32290.1 BMY5 (beta-amylase 5); beta-amylase similar to ATBETA-AMY (BETA-AMYLASE), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G15210.1); similar to beta-amylase [Glycine max] (GB:AAY40266.1); similar to Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Re (GB:1UKO); similar to beta-amylase [Castanea crenata] (GB:AAK30294.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.133871975872245 -0.92412234037639 0.375461611669293 1 -0.194950966203735 12.7978258667157 -0.133871975872245 0.198052991630574
AT3G12640_at 6.06831237934205 6.13056882171184 6.00045203681201 6.31586619356235 6.10897281476201 5.94034075468381 5.51470429804423 5.91098407337136 5.13728635880734 5.50118892169727 5.7286152615098 5.3794493153015 5.41834236997887 5.62075574125759 4.92126489501417 5.67373437505138 5.99340427736753 4.93494636478256 5.74638614951508 0.206215416294066 0.203970345572800 0.204732776142919 0.202957686052433 0.208135433486561 0.213040574052344 0.206578774259156 0.210732566894797 0.210769846387134 0.209795502644048 0.202957686052433 0.206460335658471 0.202957686052433 0.208922872485611 0.206572234931943 0.202957686052433 0.210920595006160 0.213994687225089 0.207296868819463 3 0|3 /|+ 4016888 4017621 4017366.3 4014220 4017876 + gene protein_coding_gene FALSE TRUE AT3G12640.1 RNA binding / nucleic acid binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G24350.1); similar to B0806H07.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67273.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0912295775986868 0.924110728956507 0.375467391696629 1 -0.194960986169757 11.4589924473893 0.0912295775986868 0.0930056344831833
AT1G55830_at 5.86634157749787 5.74619894880172 5.40109162336146 5.5969654641406 5.88684034027859 5.83067030753437 5.93703140952536 5.30186365397722 4.83736640621867 5.18410451840841 5.34740986130689 5.17581290786179 5.31627435610123 5.1350333710791 5.21706075447156 5.4501656672267 5.42367942569196 5.25555382536476 5.14962189596864 0.217502156828581 0.218705849809458 0.216196136080262 0.215456624875147 0.212985139681276 0.213146263314905 0.218459586750210 0.220492372941033 0.228348636509154 0.211945635622420 0.216127934452769 0.211945635622420 0.217215603746962 0.218775975433567 0.215628126115113 0.211945635622420 0.218235532413647 0.224254451045671 0.226782490411440 1 1 - 20871614 20872420 20871995.364 20871584 20873983 - gene protein_coding_gene FALSE TRUE AT1G55830.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to HPr serine phosphorylation site [Medicago truncatula] (GB:ABE89314.1); contains InterPro domain Protein of unknown function DUF812; (InterPro:IPR008530) 0.099562933658821 0.923478925711525 0.375781990535399 1 -0.19550603481308 10.8694527713079 0.099562933658821 0.117294041285302
AT1G21170_at 1.95859996267486 2.43094845978288 2.24596691336703 2.72295994308667 2.87921395232103 2.22007647662798 2.53777732951165 2.45842695256091 2.23337341090535 1.98252939885713 1.90186211277836 2.21489192702518 2.32078681303512 2.05997432410768 2.4490381834377 2.29915035867298 2.26465477562634 2.58310663828310 2.37224020183794 0.227766972843516 0.221878603294702 0.234639045694282 0.226122724918722 0.219711023360092 0.238564605438728 0.219711023360092 0.223644820084766 0.222434242167737 0.229937618226812 0.224034674847563 0.226341955044414 0.221764920915254 0.220494116868802 0.220314980102634 0.219747317129082 0.223695486019511 0.222824243167452 0.219711023360092 1 1|0 +|/ 7415781 7416590 7416202.444 7413039 7419632 + gene protein_coding_gene FALSE TRUE AT1G21170.1 similar to SEC5A (EXOCYST COMPLEX COMPONENT SEC5) [Arabidopsis thaliana] (TAIR:AT1G76850.1); similar to H0525E10.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66927.1); similar to Os04g0421900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052787.1); similar to OSJNBa0028I23.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE04638.3); contains domain SUBFAMILY NOT NAMED (PTHR13043:SF3); contains domain FAMILY NOT NAMED (PTHR13043) 0.118125808152719 0.922982867327723 0.376029127138142 1 -0.195933757764918 4.66061165481877 0.118125808152719 0.163387262785970
AT2G40240_at 1.75671007300260 1.78736314304161 1.71386219706675 1.71530771635213 1.49331038060250 1.45947752634130 2.13947120212401 1.71266712998845 1.84899871168102 1.33891563728251 2.05240769043325 1.80994299846703 1.89225510183376 2.06627858281979 1.43126414977367 1.93094414387998 1.97128638544623 1.89142282817928 1.18023521618688 0.19757434797146 0.202281489849955 0.198604071837298 0.207489982479746 0.197519121658659 0.198120524280041 0.206329187188837 0.201760803899678 0.198535656863878 0.205470363640347 0.202916434084603 0.205644892183005 0.198522260783891 0.200028274158087 0.201170811085483 0.197662907212132 0.213643848017462 0.21125215731059 0.205266359409210 2 2 + 16818629 16818916 16818751.818 16818104 16819306 + gene protein_coding_gene FALSE TRUE AT2G40240.1 pentatricopeptide (PPR) repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56030.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE80315.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.085555974052745 0.92286868781707 0.376086027668757 1 -0.19603218082333 3.39065871614205 0.085555974052745 0.0742822057652967
AT2G06820_at 2.05078929556273 2.09087447369858 2.42681925955459 2.25237309893548 1.95986302103191 2.55513507250464 1.91592260478622 2.21792762654922 2.57704746055343 2.91435304246958 2.87193951867918 2.30722082962845 2.55523007745064 2.38947276496203 2.77747307034262 2.69830218276732 2.78115749406730 2.032620275267 2.25059446926876 0.208796217239275 0.203474341170949 0.206794769592235 0.20565038381654 0.216761190606809 0.205218899385946 0.218218352219544 0.208211156568046 0.215426869386696 0.202989096730007 0.204649667623087 0.21099176697724 0.208255497254097 0.211612014650879 0.211231458654263 0.205213046925047 0.20753488156981 0.221524083710216 0.208291232684343 2 2 - 2726679 2727200 2726934.818 2726653 2727481 - gene protein_coding_gene FALSE TRUE AT2G06820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09700.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain Retrovirus zinc finger-like domains (SSF57756) 0.100340574369555 0.922772408113995 0.376134012678819 1 -0.196115166215154 4.74988406528267 0.100340574369555 0.119594938406460
AT2G33735_at 4.04888487287345 3.75556759801442 3.95081981623917 3.73087448743467 4.12682323524402 3.51303591025197 4.2464322108405 4.2220366083955 3.43946836927807 3.77001933230394 3.56371291949156 4.18889123628224 3.92057060188067 4.11087911745229 3.26165044444088 3.52548788299561 3.26019862326233 3.25096606280825 3.59429638497175 0.224395400813340 0.239412896019385 0.228716401195041 0.222975523406499 0.232834553884268 0.239157011047664 0.222975523406499 0.236510836901143 0.236045562070138 0.231633311941746 0.23312564281733 0.225713525120313 0.231449640320093 0.226192595361466 0.229017839428309 0.222975523406499 0.227778206299209 0.243575252044894 0.222975523406499 2 2|0 -|/ 14275613 14276441 14275996.7 14275345 14276517 - gene protein_coding_gene FALSE TRUE AT2G33735.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16650.1); similar to DNAJ heat shock N-terminal domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19401.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.101904355673184 -0.922601915240654 0.376218995512629 1 -0.196262099496654 7.56758732904237 -0.101904355673184 0.123796513428537
AT2G42410_at 2.24993071557569 2.61856932436208 2.2041233545734 2.28644839764279 2.21628319900996 2.23841062624154 2.50918193061620 2.37711108094982 2.70393536920325 3.16892813454075 3.07097579144573 2.82749958026408 2.88862132936262 2.53234019823738 3.11590658997322 2.86748374142494 3.39611359860927 2.72519045507068 2.80931311576327 0.245091805250600 0.249864841245098 0.253790279326193 0.256956409954249 0.248638113308547 0.255647861420519 0.251547393818288 0.248133066400379 0.245839378439745 0.246654356049049 0.248874090571559 0.24019371492404 0.250394331112196 0.244108629077486 0.241440249754273 0.248338884215114 0.246014093202026 0.240657396285101 0.251056255543971 2 2 + 17665336 17665845 17665553.455 17665228 17665872 + gene protein_coding_gene FALSE TRUE AT2G42410.1 zinc finger (C2H2 type) family protein similar to SUP (SUPERMAN), DNA binding / nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G23130.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABD32946.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0842121655648126 -0.922449750723437 0.376294853939588 1 -0.196393217785829 5.24854497048022 -0.0842121655648126 0.0693524352037314
AT3G29170_at 5.67996883799102 6.68116519566064 5.8539689092882 5.90149188288115 6.89552202547792 5.76067439407317 5.3987894789871 5.9022229641125 4.7566613968331 4.98283238161894 5.73993990274026 5.39135954042686 5.13325385915422 5.78617171416839 4.36090255598195 5.3485169812427 4.06698954739645 4.38032335221763 4.87120461237499 0.274160941635554 0.267660203054739 0.269499597566873 0.282291962532205 0.271763860135747 0.286369592281431 0.272411537741924 0.275166219366645 0.282134639730485 0.271061071654415 0.273368609605158 0.278317834185204 0.268898160139159 0.275957616113204 0.278030083516123 0.269945673096976 0.285445202493848 0.295594597715597 0.267978025896907 3 3 - 11137489 11138736 11138388.727 11137243 11139086 - gene protein_coding_gene FALSE TRUE AT3G29170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19350.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91365.1); contains InterPro domain Protein of unknown function DUF872, eukaryotic; (InterPro:IPR008590) 0.171538534233005 0.92226259444983 0.376388171561213 1 -0.196554463017151 10.9573079503632 0.171538534233005 0.276128062742021
AT2G34140_at 2.88226412736165 2.7472275093385 2.66518198618292 2.12440448641080 2.39146378244879 2.79254273106323 2.20321743177619 1.68861511784276 2.2020814151425 1.75577863300964 2.03247961762960 1.89618583412192 1.80547382334795 2.05189998960928 2.0324106595606 1.4349678093231 2.00363095561951 2.28362600839629 1.53901489076827 0.213666589259116 0.210663358180758 0.210390525836831 0.205076667431774 0.206710266155171 0.208829421743559 0.207820192860775 0.210766514792694 0.210154168355925 0.206442132011649 0.207569516291457 0.210375328001216 0.210637566825992 0.212399524554587 0.214656415282127 0.208029216562356 0.215819014819381 0.217267796092729 0.211261239870495 2 2 - 14421268 14421652 14421430.636 14420837 14421844 - gene protein_coding_gene FALSE TRUE AT2G34140.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF2.3 (AtDOF2.3) (DOF2.3) [Arabidopsis Thaliana] (GB:O22967); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G29160.1); similar to Dof3 [Glycine max] (GB:ABI16004.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.111679945420443 0.921976605867704 0.376530799276836 1 -0.196800804293223 4.32430263830702 0.111679945420443 0.148500167959304
AT2G46820_at 12.6317533647506 12.8059624982234 12.6799629485189 12.5762614927471 12.7184918827274 12.5275628787337 13.2264340387193 13.3415602040975 13.6777566611330 13.5789365012205 13.954976505186 13.9294291091045 13.7431165615158 13.8727806907732 13.8407838823621 13.8686824806239 13.237495171702 13.8663798796154 13.4640981326607 0.0604543837894076 0.0613366511584738 0.0617616143529059 0.0636861461261537 0.0635982994148203 0.0633040296315508 0.0637383615225336 0.0668570161522066 0.0710854718899707 0.0602192238419414 0.062422521372967 0.0599259114729936 0.0599259114729936 0.0661322363529835 0.0623409811329127 0.0599259114729936 0.0741682798184621 0.0613581968270966 0.0601800162743614 2 2|0 +|/ 19250828 19251454 19251187.333 19250565 19252208 + gene protein_coding_gene FALSE TRUE AT2G46820.1|AT2G46820.2 TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits. Identical to Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor (TMP14) [Arabidopsis Thaliana] (GB:Q8LCA1;GB:O81038); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52220.1); similar to thylakoid membrane phosphoprotein 14 kda, chloroplast precursor [Medicago truncatula] (GB:ABD32715.1) -0.0801246444968085 -0.921165139681683 0.37693569963074 1 -0.197499423889093 26.4948999802889 -0.0801246444968085 0.0521497100030207
AT3G43390_at 1.73204877101017 1.77309711099635 1.86329343116187 2.10596652523321 1.15558376593666 2.03121577488246 1.60888411458897 1.52920061548650 1.73906257901879 1.57682326434528 1.76298557757229 1.89033562399088 1.39554219436636 1.83381201377230 1.91652736715799 1.70818657995762 1.73599889420009 1.80242964886203 1.64271679633697 0.189271243621688 0.189559850637676 0.186166970678926 0.185366642522872 0.182936837961185 0.188000674582410 0.184364947172304 0.185955805326931 0.195914604519034 0.184832165252808 0.188143582437731 0.187838489208977 0.187111498498228 0.182936837961185 0.185412130355622 0.182936837961185 0.186464568611945 0.189596025511958 0.187572612547393 3 3 - 15337334 15337805 15337686.444 15337252 15341934 - gene protein_coding_gene FALSE TRUE AT3G43390.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G36860.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14770.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1) 0.115533456100492 0.920770434422167 0.377132758075076 1 -0.197839051734843 3.42920865568801 0.115533456100492 0.158007159871203
AT3G23060_at 1.82380438989703 2.02898353757926 2.13483115462411 2.55554714959257 1.29727938564528 1.82142551237140 1.23480878270527 2.03234572289211 2.17464073644265 2.09177382413569 2.07101515794115 1.56162954509794 1.59444721787369 1.88921739458605 1.74083094993238 1.79989705087265 1.73071556325475 2.20599771181026 2.48463993676179 0.243666513776845 0.241112678842003 0.241953841371139 0.251890745084883 0.23958969768458 0.247419775472905 0.245227150245595 0.251222914005008 0.240391676738954 0.247373757452387 0.242863755030982 0.242357322121923 0.245777418498915 0.243648025492660 0.242872247583562 0.245927768378677 0.260491780056276 0.251170063648557 0.238350180598376 3 3 + 8202273 8203076 8202762.455 8200647 8203240 + gene protein_coding_gene FALSE TRUE AT3G23060.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G06770.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G30580.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97766.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.126923741451171 -0.920674520528434 0.377180654492922 1 -0.197921563187457 3.90341336593062 -0.126923741451171 0.183951064797352
AT3G61570_at 5.24444495574707 4.98711671053709 4.69463790597154 4.79152215011024 5.53537067438189 5.11718076404779 4.89072272825925 4.67917137661219 4.45142533794744 4.48729612858539 4.78189954392281 4.87127208448921 4.64737851203994 5.05544454266859 4.84067485796444 4.41523965042125 4.28055446231718 4.35841094317407 4.73599770067181 0.206305735488111 0.185659417386279 0.194312983909127 0.192815923354089 0.187745660166460 0.199845087393031 0.193601855523728 0.190681998825671 0.203149072715844 0.190527628195694 0.193369123769052 0.185088650016502 0.185088650016502 0.185088650016502 0.193829188578991 0.191293207334668 0.198031303084163 0.192533648503725 0.190412826029353 3 3|0 -|/ 22790637 22791502 22790968 22790416 22794809 - gene protein_coding_gene FALSE TRUE AT3G61570.1 intracellular protein transport protein USO1-related similar to intracellular protein transport protein USO1-related [Arabidopsis thaliana] (TAIR:AT2G46180.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56521.1); similar to hypothetical protein DDBDRAFT_0216773 [Dictyostelium discoideum AX4] (GB:XP_646811.1); similar to Os08g0386900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061711.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.0912167665310504 0.920656528492408 0.377189639633834 1 -0.197937040314333 9.5998204317215 0.0912167665310504 0.0940311522708084
AT3G52100_at 3.99101264568298 3.48501167054236 3.71266465420739 3.8776635043068 3.15566811117884 3.49259186819581 3.52059060260097 3.40492242900098 3.77442079646256 3.33295863055402 3.34003987510953 3.7401624714059 3.14212029777293 3.09286829098759 3.38355321455745 2.98314684315134 3.19932466904535 3.02972465953368 3.06842655607500 0.295911703246292 0.310405533741887 0.317261092302531 0.295911703246292 0.299732640456308 0.311901931465894 0.318431287146331 0.297667651496819 0.310428477427245 0.310689372798029 0.295911703246292 0.298804551368800 0.305703850087850 0.308912631994101 0.295911703246292 0.295911703246292 0.313240287685449 0.319743024121685 0.312692981644649 3 3|0 +|/ 19333352 19333680 19333523.75 19330321 19333751 + gene protein_coding_gene FALSE TRUE AT3G52100.1 PHD finger family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G08020.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_795757.2); similar to Os12g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066909.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0969025449931665 -0.920522406554729 0.377256624270209 1 -0.198052406772281 6.89541711966084 -0.0969025449931665 0.110830447711614
AT2G24040_at 5.99188989002555 6.60002778478485 6.5276391465734 6.74206586800425 6.91541211739705 6.34390246765457 5.90673256181326 6.7642231614605 6.18008752955474 5.68903801118023 5.88202947449274 5.81750522802551 6.10970097434441 6.54714889512589 5.47553428637965 5.92403413700923 5.70728000811494 5.78236603601127 5.96299133254172 0.181463340928812 0.16952031710584 0.178045935506478 0.169338648695737 0.171020711408322 0.171502285840938 0.172425547052684 0.171461262706979 0.168782504037960 0.176892418472137 0.165133033185289 0.168343714462023 0.165133033185289 0.174368800575264 0.174890795465260 0.175736416267429 0.189956422869441 0.17201610669586 0.172515445226264 2 2|0 +|/ 10231110 10231586 10231335.8 10231025 10231708 + gene protein_coding_gene FALSE TRUE AT2G24040.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At2g24040 [Arabidopsis Thaliana] (GB:O82232;GB:Q53XD6); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G28088.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABE78792.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 0.139098736282669 0.920506916148015 0.377264361197252 1 -0.198065730101658 12.3988560435626 0.139098736282669 0.210368136837118
AT3G48080_at 7.94698143347222 8.62021905504668 7.56433756528123 8.02695495515722 6.11800155326996 5.55846741284074 3.09451058655199 3.1334411629809 6.3026571609931 3.04881173377788 3.08585931537644 3.80778542114655 2.66229973255404 3.83918780621764 2.77913757916089 3.67910582962028 3.51151741727234 4.75545118505603 3.8201344717571 0.327109046457086 0.315746185412872 0.318184792048084 0.31224475689645 0.305506393266735 0.310532088990912 0.296203481495726 0.299601973804125 0.29804469751901 0.288823281085298 0.288823281085298 0.288823281085298 0.302355183584509 0.292226450633553 0.305453372294327 0.288823281085298 0.290475915185048 0.288823281085298 0.29338175098568 3 3 - 17764114 17764658 17764444.364 17763923 17766175 - gene protein_coding_gene FALSE TRUE AT3G48080.1 lipase class 3 family protein / disease resistance protein-related similar to EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1), signal transducer/ triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT3G48090.1); similar to EDS1 [Lycopersicon esculentum] (GB:AAX73302.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.121330446207757 0.920452299636147 0.377291641164002 1 -0.198112704360951 10.2106529612301 0.121330446207757 0.171477681438973
AT4G20220_at 1.44968875107726 1.37713878135126 1.64252741162915 1.23679992511146 1.35745759753616 1.25537477569175 1.27129035724935 1.26061923910869 0.825878755315944 1.64759422669062 1.59732886741170 1.58079138721938 1.16015093827950 1.39683764502799 1.38643533772708 1.44278233152980 1.83338140518336 1.55757898632289 1.59934062639251 0.194048120747738 0.193195307969591 0.190268759654182 0.196581155214058 0.195905781675215 0.196415306911366 0.197173815656535 0.190212600044497 0.203211941351086 0.193724598116382 0.192822090317719 0.192166740777541 0.193984107567126 0.197912413507019 0.190212600044497 0.191139742129479 0.195366255550626 0.193745982347142 0.191035156771301 4 4|0 +|/ 10918703 10922365 10920033.4 10918686 10922406 + gene protein_coding_gene FALSE TRUE AT4G20220.1 contains InterPro domain Reverse transcriptase, RNA-dependent DNA polymerase; (InterPro:IPR013103) 0.0850809857500872 0.920007649965111 0.377513787386547 1 -0.198495048550243 2.78236980407975 0.0850809857500872 0.0735050711662012
AT4G38000_at 2.48837999419597 1.92106677778314 2.40633865317162 2.06147915582223 2.39930709242331 2.07212842828938 2.66687871882541 2.39405568161125 2.78809499742649 2.39523211067559 2.76893436519855 2.54915954951552 2.53833671600066 2.35412673905067 2.61248769877868 2.63536223246471 2.84624611711659 2.57143005678006 2.88613441946292 0.222742860717952 0.225187655618560 0.220517578011977 0.228741833211613 0.229865243491152 0.229630604216316 0.231518960183756 0.223259239072474 0.227692045129616 0.219725275625408 0.221159893187147 0.225283467642136 0.220748247031025 0.220757713044953 0.22917635286149 0.21954890003219 0.225616771643710 0.223967722175715 0.231582649102648 4 4 + 17858574 17859061 17858817.545 17858354 17859319 + gene protein_coding_gene FALSE TRUE AT4G38000.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF4.7 (AtDOF4.7) (DOF4.7) [Arabidopsis Thaliana] (GB:Q84K52;GB:Q9SZK0); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65590.1); similar to putative Dof zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76333.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.106546017751230 -0.919850262232783 0.377592440096731 1 -0.19863034531669 4.95086978454104 -0.106546017751230 0.136510477627211
AT2G04550_at 6.24197594770475 6.68121405418087 6.70289322333185 6.49088442693785 6.7966199966396 6.63346113273823 6.89427560894087 6.59611052935254 5.89874020923475 6.14260903527277 6.1092836028091 6.46585369345878 6.04310657410285 6.5245326135336 6.4969779869399 6.35836185348176 6.3589043357186 5.78932342636329 6.35693498589831 0.200965822029704 0.19668731816663 0.199542008510969 0.198914197996014 0.201231459150442 0.201067052476803 0.202525580308497 0.198955716292485 0.195936129037115 0.200041237419100 0.203110011295821 0.199038600709215 0.199650474272641 0.190198117223134 0.195945017289848 0.196601321834993 0.211668157926296 0.197612606391481 0.197849083582496 2 2 + 1589047 1589783 1589546.4 1588357 1590163 + gene protein_coding_gene FALSE TRUE AT2G04550.1|AT2G04550.3 IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5); protein tyrosine/serine/threonine phosphatase similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.1); similar to putative dual specificity phosphatase [Oryza sativa (japonica cultivar-group)] (GB:BAD62187.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387)|similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.1); similar to Os06g0308100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057473.1); similar to putative dual specificity phosphatase [Oryza sativa (japonica cultivar-group)] (GB:BAD62187.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.0940511302664182 0.919742071542407 0.377646513841909 1 -0.198723339007973 12.8302065754465 0.0940511302664182 0.102876751011242
AT3G01020_at 1.94562421083088 1.3229132104539 2.01673744444646 1.82211069793685 1.54971081591961 1.57405722664742 1.40536011309973 2.41852449761703 2.04828181994599 1.96781300043312 1.57110177142083 1.57482829452005 2.15577660389297 1.84068352458272 1.74409359402709 2.15758280816298 1.84012628487323 1.83303889485416 2.23376840343902 0.184191713022404 0.180443876988138 0.186709076660952 0.182073212027521 0.186477985187274 0.178872246367542 0.184435143083144 0.187347759417906 0.179727492685237 0.185363685784036 0.185346740859276 0.182971038775449 0.187093681154495 0.181432609008430 0.187247929453914 0.177759428083016 0.181671888345200 0.181173132981222 0.182610020120745 3 3 + 5159 5810 5354.545 5111 6056 + gene protein_coding_gene FALSE TRUE AT3G01020.1 ATISU2/ISU2 (IscU-like 2); structural molecule Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein. similar to ISU1 (Iron-sulfur cluster assembly complex protein) [Arabidopsis thaliana] (TAIR:AT4G22220.1); similar to iron-sulfur cluster assembly protein IscU [Chlamydomonas reinhardtii] (GB:AAL29442.1); contains InterPro domain FeS cluster assembly scaffold IscU; (InterPro:IPR011339); contains InterPro domain Nitrogen-fixing NifU-like, N-terminal; (InterPro:IPR002871) -0.138042615496879 -0.919069170946625 0.377982952195313 1 -0.199301513236282 3.71835063377622 -0.138042615496879 0.208582448036494
AT1G61950_at 1.53751762497927 1.64962401262453 1.74733824186100 1.71724490937800 1.54782104689661 1.37590801994961 1.34931245300152 1.78057033995365 2.1918655513139 1.88022226228549 1.73717318199408 1.79476169551252 1.8346628888958 1.86947899364051 1.94210915515855 1.56773094864349 1.57300234171859 1.85159494874454 1.8209909454502 0.167891834589122 0.169582363830645 0.174374292254507 0.176741366608838 0.175428128562718 0.177347784454526 0.171839558904268 0.172691499981036 0.168574428413486 0.17567675788551 0.177158764840693 0.172318940980503 0.171464103609435 0.171616650543938 0.168025282456110 0.176930557140797 0.179575334211259 0.167901945161832 0.176959965318743 1 0|1 /|+ 22904717 22905557 22905007 22903082 22905611 + gene protein_coding_gene FALSE TRUE AT1G61950.1 CPK19 (calcium-dependent protein kinase 19); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G50700.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to calcium-dependent protein kinase [Malus x domestica] (GB:AAR28084.1); similar to calcium-dependent protein kinase [Solanum lycopersicum] (GB:CAC87494.1); similar to calcium-dependent protein kinase [Nicotiana tabacum] (GB:AAC25423.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0876116850898964 -0.919061341855132 0.377986867843195 1 -0.199308238097984 3.45600400889971 -0.0876116850898964 0.08281545441409
AT4G14450_at 3.07034250108735 2.86663747573400 3.35831739341635 2.80752165136948 2.45218124193884 2.9252330885771 1.98398913476714 2.79785791344745 2.87361210709923 2.75345464904325 3.16148734499501 3.09653560783438 2.11674032160555 3.16367945431759 2.80029662971128 2.60968142832079 2.76416765437297 2.89682662548328 2.68766116698992 0.251960899747744 0.250082874138497 0.255583511102952 0.251452933715675 0.255637164807301 0.247061387361196 0.262286554316228 0.253289191319405 0.248647947800206 0.247061387361196 0.247061387361196 0.249857800317411 0.266059228960274 0.26040096008248 0.259587443969261 0.248481874503352 0.248313567640573 0.262173248551305 0.247061387361196 4 4 + 8309569 8309754 8309639.571 8309470 8310054 + gene protein_coding_gene FALSE TRUE AT4G14450.1 ATBET12 Encodes a member of Arabidopsis Bet1 gene family. In yeast, Bet1p is the v-SNARE (soluble N-ethylmaleimide-sensitive factor adaptor protein receptor, V-type) involved in trafficking between the ER and Golgi. Identical to Protein At4g14450, chloroplast precursor [Arabidopsis Thaliana] (GB:Q6NN02); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23170.1) 0.130353748259548 0.919017522326582 0.378008784303185 1 -0.199345876344402 5.581636478896 0.130353748259548 0.192007415230144
AT2G42050_at 2.42267342467367 2.38596111808894 2.777984730633 2.98906054309575 2.62025599228014 2.71096809452785 2.89987007176202 2.58849265824948 2.94999957415839 2.75399045183019 2.6448046806122 2.85126385105150 2.84830206193157 2.35128027621802 2.79619387989220 2.64781882270738 3.02868506900159 2.91791498725893 2.67915166009381 0.150144513270435 0.151744022583336 0.150433509134219 0.150897665476204 0.155102465576432 0.153309085574758 0.148955038676909 0.148632838846663 0.150716143997155 0.150286731491793 0.148632838846663 0.148632838846663 0.153881605290875 0.151092268235897 0.163000291336497 0.151091927183616 0.149131133590061 0.148632838846663 0.151706906229851 2 2 - 17553485 17553573 17553519.75 17553218 17553637 - gene protein_coding_gene FALSE TRUE AT2G42050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35860.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37570.1); similar to FMRFamide-related peptides type HF-4 precursor (HeptaFaRP) [Contains: FMRFamide-like; ENNNGYIRF-amide; NDPFLRF-amide; QDPFLRI-amide; QDPFLRF-amide; KQDPFLRI-amide; SEPYLRF-amide; NDPYLRF-amide] (GB:Q07981); contains InterPro domain Protein of unknown function DUF321; (InterPro:IPR005529) 0.0833602067486836 0.918912941152485 0.378061094484661 1 -0.199435698934062 5.45199008696968 0.0833602067486836 0.0672658316405593
AT2G21800_at 1.42580877084633 1.46768134561305 1.53204910122285 1.43137563573169 1.29188877641419 1.38949846910521 1.19081797167274 1.48937654793386 1.61898341686635 1.45863916885950 1.91073234818831 2.03890175923266 1.91013220257017 1.24922877014479 1.72382985954662 1.16712697454880 1.35197697298492 1.82546396896821 1.43102455447429 0.188925731963574 0.178673847037110 0.192859457532165 0.184747041501954 0.178344600707127 0.177434218846863 0.184437419479495 0.185907261772895 0.177434218846863 0.177434218846863 0.177434218846863 0.194217220583960 0.194029828839547 0.17784618311122 0.184571815353909 0.180425659299300 0.191245401538357 0.183311371632998 0.177434218846863 2 2|0 +|/ 9307717 9308800 9308173.222 9305234 9309004 + gene protein_coding_gene FALSE TRUE AT2G21800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22140.1); similar to hypothetical protein MtrDRAFT_AC141113g18v1 [Medicago truncatula] (GB:ABE94626.1); similar to OSJNBa0010D21.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE01666.2); similar to Os04g0648700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054077.1) 0.0810367817791722 0.918551183179807 0.378242080536823 1 -0.199746338709699 2.97734032086238 0.0810367817791722 0.0575399170659162
AT3G50760_at 2.97435189289288 3.69602669910904 2.96369156525649 3.43234042807833 3.02063060071621 3.36795511884199 3.94702722489262 4.86904641968177 3.09755085939285 3.82055792129858 3.33218495053714 4.73268743323804 3.68146866235898 3.70861463688785 4.09410221161350 3.53777779777799 3.7246321481749 4.43006330250734 3.64939183191534 0.2055883733541 0.198352004176346 0.211587378736067 0.199349342271774 0.203219713673950 0.200062375363782 0.20496192300278 0.201179791370357 0.214475614622668 0.216525247971071 0.198218188221477 0.205068855175781 0.199276393555375 0.205278605992169 0.204161745741619 0.202413182930791 0.226415516350008 0.203555326297249 0.199529691012096 3 3 + 18879504 18880049 18879775.909 18879046 18880365 + gene protein_coding_gene FALSE TRUE AT3G50760.1 GATL2 (Galacturonosyltransferase-like 2); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL1/GLZ1/PARVUS (Galacturonosyltransferase-like 1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G19300.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE78500.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.146383721118055 -0.918404460684673 0.378315502582133 1 -0.199872299130508 7.24772954222828 -0.146383721118055 0.226377726311843
AT1G70740_at 4.70580126100531 4.9105648950506 5.2217970301762 5.08257141084738 4.84430815622817 4.60590206568671 4.42382240742257 3.98267590851259 5.00907349014498 4.17636896125511 4.4921245337842 3.82127081736513 3.60850840078788 4.03834737138321 4.06287034597904 3.79263874817026 3.63379965545812 3.90163564135199 4.42123501383441 0.235237177644054 0.219907189243756 0.237676303200768 0.226260810632039 0.222838698932416 0.234973774210381 0.223442227613799 0.228373034514467 0.231371502657362 0.219907189243756 0.220079354822659 0.220193344515021 0.230269837445244 0.23076738588437 0.220676753269031 0.221399131129746 0.249871173676047 0.221995681583804 0.219907189243756 1 1 - 26677523 26678192 26677787.364 26677294 26679609 - gene protein_coding_gene FALSE TRUE AT1G70740.1 protein kinase family protein similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); similar to Os03g0556600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050479.1); similar to Os01g0784200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044460.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0918655840281721 -0.91822877395652 0.378403431936686 1 -0.200023102811369 8.94940968904776 -0.0918655840281721 0.0967806743571611
AT2G22650_at 5.21472229461392 4.64165613160025 4.6446622223813 4.43670607082527 4.96118000607752 5.05264942154246 4.16084766427594 3.71423478118297 4.61520168339761 4.99500443260853 4.32696558327619 4.73609180313447 4.41036886032283 4.44129488643988 4.7935831016925 5.07168141624357 4.50633451855143 3.93100540586146 5.62009365005506 0.232400478825067 0.236614844458682 0.245296496298847 0.243837728435644 0.232765742329206 0.255248427829593 0.233384697552754 0.242497122369775 0.241737128635430 0.239430168432973 0.234807730657489 0.236978640900874 0.232400478825067 0.234140021275505 0.242196464909683 0.232400478825067 0.241649104199029 0.25133675002003 0.238930592846157 2 2|0 -|/ 9631867 9632557 9632078.9 9631666 9634049 - gene protein_coding_gene FALSE TRUE AT2G22650.1 FAD-dependent oxidoreductase family protein similar to putative D-amino acid dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:BAD72311.1); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) -0.104333339729207 -0.91698224489415 0.379027719434238 1 -0.201092381882448 9.40529846687613 -0.104333339729207 0.131735447082480
AT1G64300_at 2.43511851012209 1.87947021309267 2.61803090705734 2.30069422686771 2.07838555088335 2.38173362929706 2.12127052081824 2.33677496197213 2.50992504205432 2.33851318984936 2.21862952822622 2.12654634908543 2.73468027697506 1.82959864591939 1.94009264722987 1.89036390088530 1.89498691454115 2.07686870871135 2.49063103841863 0.177346143989995 0.182846289423185 0.180839910426466 0.177923083638038 0.179050545495074 0.184842060262844 0.177124429577304 0.183344840250289 0.187539782841883 0.183572973100014 0.177124429577304 0.177124429577304 0.178904167016911 0.177124429577304 0.185969064452619 0.178293431206747 0.193964654258704 0.182566965832277 0.180682355734154 1 1|0 +|/ 23868785 23869398 23869104.3 23866729 23869708 + gene protein_coding_gene FALSE TRUE AT1G64300.1|AT1G64300.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G41730.1); similar to photoreceptor [Ceratodon purpureus] (GB:CAA71838.1); similar to Light-sensor Protein kinase [Includes: Phytochrome; Protein kinase ] (GB:P25848); similar to Os01g0621600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043605.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein of unknown function DUF1221; (InterPro:IPR010632); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.102916512484484 -0.916922241184276 0.379057788787952 1 -0.201143822399462 4.53659846245757 -0.102916512484484 0.12809667291867
AT3G54030_at 4.25268481234327 4.62073790535782 2.83215822097723 2.96015699994443 4.37408113111945 3.47295543164339 4.36701432542729 3.79927763551593 4.80513873189958 4.08387781904846 6.17776427511833 5.55291419216498 4.54262219071421 6.12082258212214 6.62334171233165 5.34373413531167 3.5203454157542 4.77440150565012 3.76470689327893 0.234211393821347 0.238801290497580 0.239311680370341 0.242410283140729 0.232657208364235 0.24098292941271 0.23653972911697 0.230608889585007 0.237511748098656 0.23925096754693 0.235680525670621 0.237357646717679 0.238765147205917 0.230047581897786 0.23526694002595 0.230380144340326 0.243193661010645 0.238428575451047 0.232524254011069 3 3 + 20023675 20024395 20024046.091 20021905 20024671 + gene protein_coding_gene FALSE TRUE AT3G54030.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G41260.1); similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G59010.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G00710.1); similar to TPR-containing protein kinase [Glycine max] (GB:AAX61123.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82930.1); similar to H0913C04.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86160.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.131997356331820 0.91686895892095 0.379084491263029 1 -0.201189498309147 8.60983384073522 0.131997356331820 0.196262547921952
AT1G03510_at 2.31690786084016 2.03033324258855 2.25658156887814 1.78732351110018 1.74938980054008 2.28709546623256 1.73901933078069 1.67978670291071 2.22143707886250 1.81006214886113 1.71211910808255 1.92704587841703 2.05744253841373 1.81020287154507 1.97269990579481 1.79530738816505 2.61975329579378 2.01833749756751 1.54157419624972 0.211022559092352 0.208719171949312 0.209299322812661 0.211074244573447 0.224218741306805 0.210387384067267 0.218684174517242 0.214192863339383 0.212511437911888 0.218815191957249 0.21873570794531 0.213381502329283 0.21438409773381 0.208336621656009 0.212910368777474 0.209189056259803 0.210150895424757 0.219859051538788 0.215910417154104 1 1 - 876383 876773 876618 876259 877548 - gene protein_coding_gene FALSE TRUE AT1G03510.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO20068.1); similar to Os03g0852000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051920.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.105004110777853 0.916860984566445 0.379088487734842 1 -0.201196334085013 3.90420703638233 0.105004110777853 0.133483830491050
AT3G14225_at 0.902987892802507 1.25083388024255 1.08915077993847 1.01536473404338 1.10605331695431 0.818467284877819 0.683603592280752 1.15140540978496 0.907667503235005 1.06807851777707 0.634549345225579 1.27215036104981 0.679845506858489 0.639465202094807 0.828447165289827 0.960205646164377 0.653309601488445 0.826866998373007 1.07413349398366 0.20518184888844 0.205527962672974 0.20302377586751 0.20235077230746 0.208677520066806 0.208698784763659 0.201628398803011 0.209162323692120 0.207122043130034 0.206615689188627 0.208782108396944 0.206170939695024 0.212878154579805 0.209774928831827 0.201628398803011 0.201628398803011 0.203346200815443 0.211760531651163 0.214409827583086 3 3 - 4734643 4735281 4734867.364 4734623 4736000 - gene protein_coding_gene FALSE TRUE AT3G14225.1 GLIP4 (EMBRYO DEFECTIVE 1474); carboxylic ester hydrolase Contains lipase signature motif and GDSL domain. similar to GLIP3 (GDSL-motif lipase 3), carboxylic ester hydrolase/ lipase [Arabidopsis thaliana] (TAIR:AT1G53990.1); similar to lipase SIL1 [Brassica rapa subsp. pekinensis] (GB:AAM47031.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0973600957523658 -0.916786124659085 0.379126006386019 1 -0.201260503041177 1.91647410302390 -0.0973600957523658 0.113213397728698
AT4G13460_at 7.09371669871718 7.28833925473484 7.44125510385206 7.30326324833478 7.51170572109416 7.64779973973377 7.78910796890874 7.64821089432904 6.7669834736415 7.20297928709606 6.92241524642928 6.78025884372904 7.0785512737968 7.07850154790579 6.97054372642381 7.05252659880732 7.67313726219942 7.00747077946509 6.82478383608994 0.157528360947678 0.153229316735684 0.15995565468725 0.154777834047875 0.152440726335182 0.156540529051044 0.156464774415619 0.160898055194113 0.156956231411605 0.156834191386277 0.160603354588092 0.161253141768833 0.158928049064203 0.161069775816164 0.156578759934837 0.156812776222479 0.161135341821414 0.160071619687477 0.171739016800406 4 4 - 7824691 7825166 7824908.727 7824030 7827000 - gene protein_coding_gene FALSE TRUE AT4G13460.1|AT4G13460.2 SUVH9 (SU(VAR)3-9 HOMOLOG 9); histone-lysine N-methyltransferase/ zinc ion binding Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and this subfamily of the SET proteins have an additional conserved RING finger motif called YDG domain. Identical to Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 9) (H3-K9-HMTase 9) (Suppressor of variegation 3-9 homolog protein 9) (Su(var)3-9 homolog protein 9) (Protein SET DOMAIN GROUP 22) (SUVH9) [Arabidopsis Thaliana] (GB:Q9T0G7); similar to SUVH2 (SU(VAR)3-9 HOMOLOG 2) [Arabidopsis thaliana] (TAIR:AT2G33290.1); similar to Os07g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059503.1); similar to Os08g0565700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062536.1); similar to SRA-YDG; SET-related re (GB:ABE79848.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) 0.0800028549916558 0.916779949868432 0.379129101214048 1 -0.201265795795072 14.4664287581066 0.0800028549916558 0.0534212933244931
AT1G20330_at 8.64609976256856 8.88028650380499 8.5741783184689 8.75775120520664 8.80447207765453 8.91991904025362 9.15990611028532 9.49932525467679 9.59679863431217 8.98222534993089 10.2774256985449 9.9212154465902 10.0234811157291 9.86838790913538 9.73270556956454 9.76170778483473 8.90261976700978 9.61444830859768 9.34179100170655 0.105114367067596 0.108004175060239 0.111328175727052 0.108659774318606 0.104908398784602 0.109254266168957 0.106468648076534 0.106185765378731 0.110542446214735 0.10639350499906 0.104826542617766 0.102823819072706 0.106554211982224 0.106626931776304 0.105754875379367 0.106609763534323 0.122361877352164 0.108665162154252 0.103753800834506 1 1 - 7039104 7039521 7039352.273 7038680 7040149 - gene protein_coding_gene FALSE TRUE AT1G20330.1 SMT2 (STEROL METHYLTRANSFERASE 2) Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression. Identical to 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2) (SMT2) [Arabidopsis Thaliana] (GB:Q39227;GB:Q8H155;GB:Q8L7L3;GB:Q8LCB0;GB:Q9LN25); similar to SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3), S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT1G76090.1); similar to S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum] (GB:AAB62808.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Sterol methyltransferase C-terminal; (InterPro:IPR013705) 0.0867431869564652 0.916601439727233 0.379218578837817 1 -0.201418793659535 18.4400859234402 0.0867431869564652 0.0806285787253719
AT1G10780_at 1.34585176082366 1.17997469834328 1.37613649340147 1.03014086488108 1.19387016634579 1.58231536486300 1.20288607254639 1.26838220180201 1.07157661520243 1.51661826871097 1.09633211096310 1.61717643721788 1.82204613306218 1.16232678742779 1.52626339874232 1.31893773990319 1.67605767031104 1.56914006525503 1.42450924087873 0.216191089870489 0.215261535606229 0.220091277747118 0.225935102629712 0.212523655685651 0.227021531315940 0.217339907107133 0.220503793095408 0.228402638955015 0.212523655685651 0.215990196308584 0.215932422319266 0.2151269761561 0.217818536442586 0.229871950507572 0.219873776143971 0.217244475914109 0.217718911306008 0.217028221152253 1 1 - 3592902 3593608 3593294.909 3592747 3595078 - gene protein_coding_gene FALSE TRUE AT1G10780.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67190.1); similar to Os09g0454300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063351.1); similar to Os08g0469500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062012.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE77844.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0911545201284688 0.91635321075549 0.379343027465193 1 -0.201631504420898 2.67799624510468 0.0911545201284688 0.0951655258221877
AT4G24030_at 3.76048702776218 3.52103760228541 3.90333798223078 4.43528854783355 3.37369661359973 3.82204588128319 3.29012018331049 3.98409300704791 4.11237033837918 3.72120783621904 3.70204591543516 3.66935394507231 3.64311959839253 3.87562407451684 3.83273551940649 3.83745533926342 4.01306403500869 4.08673777942303 3.66394784954919 0.200969413513842 0.203148083817705 0.197678596457568 0.209659376903556 0.207428319685907 0.200268495928419 0.213386265015721 0.203155480461006 0.20477273129669 0.203043862302414 0.201122114469294 0.200641374994558 0.197678596457568 0.197678596457568 0.209635046833374 0.202148083079910 0.216538972167664 0.204435673716171 0.216390311218138 4 4 - 12486264 12486613 12486472.545 12486257 12486643 - gene protein_coding_gene FALSE TRUE AT4G24030.1 unknown protein 0.122333076117161 0.916215695854036 0.379411982377893 1 -0.201749321828807 7.59377620593446 0.122333076117161 0.175026872501749
AT3G09180_at 6.06521768339866 7.04803415820875 6.31031006086177 6.25733181818378 6.94374108528988 7.06378000202311 5.79606249182959 6.3313451839055 5.58863812674887 5.00343998608908 5.13234753726749 5.40677222417555 5.02589132094933 5.55359081911214 4.95758332342065 5.78894023535238 4.92638971328659 5.35626661809042 5.42642783819253 0.229547633379883 0.227166988670924 0.232003255630098 0.229882039705479 0.231658113140847 0.234483101530822 0.225682211631078 0.230273913103442 0.244279340214873 0.221792244373384 0.227680763433153 0.223647848537922 0.222140204612262 0.226381117325536 0.223962776858133 0.222369842612398 0.222409485612472 0.224801083172934 0.220731928813306 3 3|0 +|/ 2820220 2821053 2820683 2819123 2821430 + gene protein_coding_gene FALSE TRUE AT3G09180.1 similar to Os01g0263500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042658.1); contains domain SUBFAMILY NOT NAMED (PTHR13130:SF1); contains domain FAMILY NOT NAMED (PTHR13130) 0.131298301267004 0.916043047230066 0.379498567071666 1 -0.201897219269523 11.7809651642795 0.131298301267004 0.194997502135457
AT1G16130_at 2.85139458753026 3.08265638662854 2.96978743717622 2.71883856305337 3.24619815512156 3.17117604393552 2.29711394736805 2.69439972495824 2.89432867168799 2.67683244994219 2.27624506462646 2.89750853961151 2.40244643464618 2.70546922471480 2.67102222482659 2.52997987700732 2.90580201001654 2.86068994584573 2.74279845218042 0.198186464359416 0.19796601123376 0.202066939509108 0.192102187286464 0.201391139714465 0.189279652453373 0.196221807839689 0.193366195152496 0.197673374430490 0.199718648861777 0.191519554089583 0.19477254712554 0.196428953560748 0.191666640905408 0.194901866709438 0.195630892476247 0.198402852761347 0.193447709212364 0.192745541350399 1 1 + 5527455 5528016 5527799.182 5525485 5528206 + gene protein_coding_gene FALSE TRUE AT1G16130.1 WAKL2 (WALL ASSOCIATED KINASE-LIKE 2); kinase wall-associated kinase like Identical to Wall-associated receptor kinase-like 2 precursor (EC 2.7.11.-) (WAKL2) [Arabidopsis Thaliana] (GB:Q7X8C5;GB:Q9S9M4); similar to WAKL1 (WALL ASSOCIATED KINASE-LIKE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G16120.1); similar to WAKL4 (WALL ASSOCIATED KINASE-LIKE 4), kinase [Arabidopsis thaliana] (TAIR:AT1G16150.1); similar to RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1), kinase [Arabidopsis thaliana] (TAIR:AT1G79670.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protease inhibitor I8, cysteine-rich trypsin inhibitor-like; (InterPro:IPR002919); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.0899672227127096 0.91594724207208 0.379546620129509 1 -0.201979279477478 5.59267824227085 0.0899672227127096 0.0915591101329465
AT2G28960_at 1.18522669808671 1.02088363673643 1.41844400486696 1.52451849096922 0.79007465983014 0.976332960428944 0.81718478975232 0.882935107288977 1.52565682445352 1.57968412070946 1.26697769166782 0.914585815587481 1.31234702171451 1.25645208111615 0.905956588819828 1.37502234642935 1.39014909513084 1.39762850961308 1.65238798770092 0.202080058963971 0.198118625346698 0.202355719753098 0.198753737600581 0.201354633964189 0.204457175709455 0.201060599879880 0.20391287834442 0.208452002793551 0.207800629167895 0.202209338242987 0.200240920682619 0.201767408591393 0.205641112796009 0.212770547266954 0.201290284760347 0.21277395164804 0.205378971940449 0.204871287997642 2 2 - 12445153 12445783 12445463.636 12444991 12449424 - gene protein_coding_gene FALSE TRUE AT2G28960.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G29000.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G28990.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0788673897351884 -0.915773824434979 0.379633612203314 1 -0.202127798815716 2.48359981251889 -0.0788673897351884 0.0481066122328556
AT1G66250_at 4.30679171310305 4.53690855776612 5.18500433405829 5.89194305248584 4.35633741720721 4.18365479528498 5.56366196207394 5.44471728394024 3.85415951490104 4.21196123220196 3.62529434834449 4.12002945397416 4.15293399934668 3.78124270203218 4.39306082095512 3.74570813920052 3.78743784039896 3.67851373188731 4.11869970856469 0.219610747393964 0.220630335068858 0.218596141023550 0.221829246709633 0.219713087981153 0.226143324458998 0.229431873258061 0.235539415098016 0.228996161995391 0.217534412758293 0.217534412758293 0.223515792734900 0.221824447307673 0.220842907312773 0.217534412758293 0.217534412758293 0.225922236991747 0.231867706715376 0.218111799454445 1 1 + 24698047 24698551 24698296.818 24696557 24699178 + gene protein_coding_gene FALSE TRUE AT1G66250.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 2 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 2) ((1->3)-beta-glucanase 2) (Beta- 1,3-endoglucanase 2) (Beta-1,3-glucanase 2) [Arabidopsis Thaliana] (GB:Q9C7U5); similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.1); similar to Os03g0221500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049413.1); similar to beta-1,3-glucanase [Camellia sinensis] (GB:AAK85402.2); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.104932084250112 -0.915571709565652 0.379735017441632 1 -0.202300865188653 8.91969461352662 -0.104932084250112 0.13367654952687
AT1G63010_at 8.49448227283847 8.7905041386755 8.60484912273875 8.58509544493155 8.70723069981507 8.40128609760044 8.63898789908846 8.53613903566534 7.65043326162532 8.27700762091162 8.21649710938554 8.09175201483435 7.9536703296236 7.97203257598812 7.91041463851033 8.24217438418616 8.10698052066281 8.16295149318977 7.68567351080303 0.143107790301724 0.147071588004719 0.143629815452113 0.144596869817820 0.148902083329524 0.142533950355568 0.146359359152350 0.142276653046177 0.156771506495209 0.143929562526685 0.144515733831964 0.142606024594714 0.143591686708855 0.153106038856499 0.142755571153730 0.141265542817506 0.15140406097202 0.157758110489120 0.141343787658108 1 1 - 23351655 23352499 23351951.636 23351382 23356311 - gene protein_coding_gene FALSE TRUE AT1G63010.1|AT1G63010.2|AT1G63010.3|AT1G63010.4 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G11810.1); similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G22990.1); similar to SPX (SYG1/Pho81/XPR1) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44792.1); similar to SPX, N-terminal; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE83067.1); similar to SPX (SYG1/Pho81/XPR1) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29241.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.0853040034443857 0.915500418012574 0.379770790437267 1 -0.202361902817996 16.5713704711246 0.0853040034443857 0.075868068798614
AT2G30480_at 2.29906551832111 1.89987465822762 2.17138007171716 2.41711177490749 1.75528080418548 2.23141232961950 2.12461632353518 1.78062434122274 1.91686297839664 2.26217641180002 2.38541057862805 1.97251666871432 1.90925911274588 2.35360507273782 2.1766232955154 2.28148420502436 2.39805814596977 2.25943537538251 2.20436564179676 0.194649612246942 0.197265955902965 0.194566063739373 0.198930228607402 0.192585393981317 0.190187345548183 0.200065814917844 0.193900665932216 0.205897913209838 0.191411285443971 0.190983161485008 0.188238903563068 0.194842326050301 0.191225853750358 0.197143667053824 0.188238903563068 0.194105565747857 0.193748789400732 0.194605845906314 2 2 - 12995761 12996459 12996101.455 12994173 13000477 - gene protein_coding_gene FALSE TRUE AT2G30480.1|AT2G30480.2|AT2G30480.3 similar to Os01g0167700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042122.1)|similar to P0028E10.10 [Oryza sativa (japonica cultivar-group)] (GB:BAB39906.1); similar to Os01g0167700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042122.1) 0.103499207144683 0.915395145888875 0.379823618684664 1 -0.202452026212543 4.25734609480249 0.103499207144683 0.130052522949836
AT3G10060_at 9.44718136077016 9.49215413857228 9.26089270584987 9.1024506568871 9.99553730942356 9.25706386498654 10.6353073197236 10.1176748432758 10.0368308440453 10.1194900060259 10.4403670341263 10.5261608588264 10.2390726650412 10.3558646856242 10.4358613487963 10.5157174941213 9.8289254224065 10.3438574075231 9.98409849880501 0.120435936609505 0.115587481711002 0.125445293965428 0.125413039936179 0.120048291750882 0.119777550837370 0.119596904870960 0.12449606245258 0.128337194657564 0.115587481711002 0.119432062975529 0.11666562725298 0.115587481711002 0.124293666195146 0.120369562715885 0.115660249915569 0.131013354713214 0.118916472504451 0.115587481711002 3 3|0 +|/ 3102509 3103551 3102896.286 3102162 3104019 + gene protein_coding_gene FALSE TRUE AT3G10060.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT1G20810.1); similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83911.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.115085683182957 -0.915042677327894 0.380000534005624 1 -0.202753710493449 19.8548001820279 -0.115085683182957 0.158646190533649
AT1G25240_at 1.39904018606794 1.37441428590396 1.38905388073733 0.916520504870219 1.27169581418871 1.37134745591263 1.37639438995533 1.49647767550153 1.85833870034273 0.948115320539881 1.10681668647227 1.46046127869796 1.00294513193161 1.12992256798334 1.60767051617230 1.40519495584654 1.19025522119906 1.83549796766956 1.22642705210217 0.199228641848113 0.201945734376835 0.200010765400675 0.202704734795894 0.207531432071541 0.207438556519792 0.19722012789244 0.215144301110725 0.220553601517343 0.208968023819592 0.207433280182185 0.200174759178771 0.202902111769249 0.201903390320682 0.205825575638573 0.200555627397589 0.204890210127281 0.215193082889094 0.198509345086479 1 1 + 8845765 8846308 8846053.091 8845218 8846480 + gene protein_coding_gene FALSE TRUE AT1G25240.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related Identical to Putative clathrin assembly protein At1g25240 [Arabidopsis Thaliana] (GB:Q9FRH3); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT1G68110.1); similar to Os09g0449500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063322.1); similar to Carbamoyl-phosphate synthase L chain, ATP-binding; ANTH [Medicago truncatula] (GB:ABE84582.1); similar to Os08g0467300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062002.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.0881876853391588 -0.914510350718137 0.380267835555298 1 -0.203209152226418 2.66768764001296 -0.0881876853391588 0.0862230290179042
AT1G07050_at 8.04725302578086 7.92122793145166 2.78842429222443 2.37962647533875 5.87979392027144 4.84282492007561 0.811282836920009 0.634681251260229 0.351496428472233 0.182981583708265 0.650796436004333 0.809299949004418 0.422632283559301 0.926569550508783 0.645135055111907 0.312349188422051 0.551477313557143 0.326139997106207 0.854961099219258 0.296396082933902 0.303294411118285 0.290613391971950 0.287694004303987 0.304576606049706 0.309785661074310 0.280576574116747 0.280576574116747 0.280853911938485 0.283624355312951 0.289255207014168 0.280576574116747 0.282126410237530 0.281488435148039 0.280576574116747 0.290044876473590 0.282462991451826 0.282959758559718 0.284025196612812 1 1 - 2164502 2165065 2164844.091 2164187 2165238 - gene protein_coding_gene FALSE TRUE AT1G07050.1 CONSTANS-like protein-related similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.1); similar to putative stress resistance-related protein [Oryza sativa (japonica cultivar-group)] (GB:ABF00989.1); similar to Os06g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057333.1); contains InterPro domain CCT; (InterPro:IPR010402) -0.131770129091475 -0.914491515690665 0.380277295760400 1 -0.203225262769778 4.6849875027283 -0.131770129091475 0.196513519198934
AT3G11280_at 10.0806632312132 10.4899919309940 10.4891493556859 10.5921823052076 10.5853897926305 10.2885919768026 10.7030273784758 10.8348954839315 10.5457874897025 10.6551602308949 10.4248490330145 10.1163155294033 10.2842586823163 10.3246060749147 10.0783178014336 10.5217068470096 10.4736440278279 10.5807873716318 10.2757220135538 0.113267946297039 0.104352805755184 0.110068296921864 0.105337318967123 0.109287129344626 0.112331607304246 0.109748147767036 0.103796516033834 0.111108377817061 0.102686552428817 0.107433009462250 0.103046775397797 0.108667521680103 0.114534513892533 0.104232000053721 0.101707196122905 0.118154426925661 0.109589006201524 0.111859263019247 3 3 - 3533485 3534082 3533710.909 3533261 3534853 - gene protein_coding_gene FALSE TRUE AT3G11280.1|AT3G11280.2 myb family transcription factor Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G05790.1); similar to MYB transcription factor MYB75 [Glycine max] (GB:ABH02835.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0899893611725113 -0.914233098732212 0.380407106650371 1 -0.203446271397325 20.9293783896981 -0.0899893611725113 0.0921658521119785
AT4G16050_at 2.20179419187042 2.2263738359681 2.00090250540771 2.05644353755601 1.51356832530389 2.31860529968627 1.70551843313744 2.40754455681425 2.46892093296619 2.17794888216071 2.14369611774433 2.44235288058214 2.29881859567024 2.58672962958033 2.18894903016531 1.91103501403146 2.44886686915801 2.25959540834252 2.47830209647218 0.201827620726367 0.204413686974913 0.21104086199268 0.201573219122818 0.215357413007482 0.205838261700033 0.205419372835347 0.212782758220506 0.207551870579359 0.225229096073932 0.20393401768785 0.203580344187974 0.210509018324093 0.214903607552185 0.202383027403181 0.210296376279710 0.206544101974075 0.205930902404581 0.213687080781953 4 4 + 9093660 9094221 9093873.818 9092238 9094369 + gene protein_coding_gene FALSE TRUE AT4G16050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51538.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO60015.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) -0.126489849083074 -0.913640369659708 0.380704970413871 1 -0.203952997573513 4.38387520923084 -0.126489849083074 0.185145375007217
AT4G22320_at 3.72870324407649 2.96921905166048 3.34675780809291 3.39508100548799 2.78985256426646 3.15947551203699 3.21091466511054 3.26780830275927 2.52972666502337 3.03106840435864 3.48857548418126 3.2724597682293 2.91731757624604 2.72231948327511 3.18949393780062 2.75038409892388 2.95904383624022 3.03240329145194 2.54018180903003 0.183902578380419 0.175720462435692 0.172920808806328 0.181537348026872 0.179587369443785 0.174316644135652 0.175900975338812 0.176943401603269 0.177198653590973 0.177207518520555 0.172920808806328 0.172920808806328 0.180287460826979 0.175557551524997 0.178808051699982 0.174416831138064 0.180460098037395 0.177457589869889 0.179355018402896 4 4|0 -|/ 11793165 11794459 11794234.9 11792936 11794738 - gene protein_coding_gene FALSE TRUE AT4G22320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55210.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28485.1) 0.109902232487797 0.913263026896551 0.380894681473635 1 -0.204275444317176 6.10438917452684 0.109902232487797 0.14674069980279
AT4G09080_at 2.24044643934552 2.48304081284879 2.66648376780878 2.40996373441033 1.93058762207973 2.39846035659104 2.2509030480204 2.16249871686186 2.67033651353125 2.8266206638581 2.53692114009511 2.4013786468103 2.28170213012497 2.45672564358381 2.41313916050734 1.92993544554231 2.38066706558739 2.41945286633469 2.32163838489183 0.183007177743512 0.183571753710590 0.182299956638104 0.191103593226118 0.189079279462932 0.182884628971334 0.191391208895575 0.189109398745046 0.182299956638104 0.182299956638104 0.195875646642038 0.185058989850438 0.190194557705634 0.188673928667936 0.193957111806762 0.184098238973194 0.192539780305963 0.192020279047914 0.186382318957012 4 4|0 +|/ 5805309 5806038 5805572.2 5803808 5806352 + gene protein_coding_gene FALSE TRUE AT4G09080.1 ATTOC75-IV/TOC75-IV (TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV) Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Knockout mutants have abnormal etioplasts. Identical to Chloroplastic protein TOC75-4 (75 kDa translocon at the outer- envelope-membrane of chloroplasts 4) (AtTOC75-IV) (TOC75-4) [Arabidopsis Thaliana] (GB:Q5IZC8;GB:Q9M0R9); similar to TOC75-III (translocon outer membrane complex 75-III), protein translocase [Arabidopsis thaliana] (TAIR:AT3G46740.1); similar to Protein TOC75, chloroplast precursor (75 kDa translocon at the outer-envelope-membrane of chloroplasts) (Import intermediate associated protein of 75 kDa) (75 kDa chloroplast outer envelope protein) (GB:Q43715); contains InterPro domain Bacterial surface antigen (D15); (InterPro:IPR000184) -0.0932783212419138 -0.913159197970491 0.380946893646483 1 -0.204364148375165 4.79714245378762 -0.0932783212419138 0.102581395008858
AT2G24780_at 0.916058860596233 0.855522011405212 0.681739315040124 0.48702094381882 0.58538398573356 0.405497135508875 1.02148166024056 0.697941259534303 0.691517400879976 0.853327081021205 1.33731307567142 1.01480905514686 1.30016875667788 0.623577171381805 0.745135036661463 0.164517235396151 1.10922113530000 0.908714207173191 0.6639853823219 0.256860078498403 0.259610302217167 0.257753426498754 0.248028478370343 0.262438806188177 0.258042832913862 0.248028478370343 0.248028478370343 0.268486622198071 0.248028478370343 0.248028478370343 0.251069294360093 0.248028478370343 0.280551095016326 0.254091251979642 0.269812032767359 0.256776675920217 0.248028478370343 0.255714506012652 2 2 - 10572760 10572827 10572793.667 10572701 10573025 - gene protein_coding_gene FALSE TRUE AT2G24780.1 unknown protein -0.0843426325751645 -0.913079379293894 0.380987035263222 1 -0.204432333976899 1.52468493677661 -0.0843426325751645 0.0731384011171334
AT2G36550_at 1.65303953590846 1.85529267479483 1.66450734972249 1.83247322039369 1.4870902381763 1.53187400257625 1.42579888909689 1.64343574582545 1.78818738181012 1.98376368274352 1.86321167116163 1.48677955813183 1.67654554466521 1.52349468180738 1.48926206624879 1.64863955009425 1.63431890294287 1.68773376693099 1.54659157217429 0.214563529066596 0.221702171820742 0.22188141923065 0.214678576928628 0.219941264725801 0.217591266138255 0.219810551893299 0.218078860603854 0.217258768521662 0.219907229980959 0.217692178515886 0.215142184466178 0.214563529066596 0.222857361625852 0.214563529066596 0.218100543896936 0.226813695007614 0.21868492244143 0.224478805375349 2 2 + 15334787 15335841 15335369.818 15334626 15335881 + gene protein_coding_gene FALSE TRUE AT2G36550.1 similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT2G36540.1); similar to Os03g0755800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051313.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98949.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.0810024182586677 -0.913050764634882 0.381001426586102 1 -0.204456776998843 3.33623683872372 -0.0810024182586677 0.0595695913908333
ATCG00130_at 10.539025241119 11.8393086731104 10.8838385427959 11.2937653020539 10.6032187867504 10.4380742286210 11.0257212067428 11.5071205095826 11.9366230542980 11.8553436452207 12.7992713663143 13.1649900248162 12.6620624673341 12.4449860280260 12.5786217300425 12.6665597730052 12.2657340590598 11.9672664759485 11.6982497687958 0.113021459110324 0.113802032839209 0.117875754572302 0.114634485409728 0.113010307181932 0.120296717986781 0.112444112591592 0.117161210724480 0.121931856192600 0.117338635662960 0.11200406217524 0.111242489212800 0.111242489212800 0.117868852489804 0.112683170290745 0.111242489212800 0.115346503652541 0.113739121255926 0.122906840653459 C C - 11654 12759 12120 11529 12798 - gene protein_coding_gene FALSE TRUE ATCG00130.1 ATPase F subunit. Identical to ATP synthase B chain (EC 3.6.3.14) (ATPase subunit I) (atpF) [Arabidopsis Thaliana] (GB:P56759); similar to ATP synthase CF0 B chain [Atropa belladonna] (GB:NP_783218.1); contains InterPro domain ATPase, F0 complex, subunit B/B' (InterPro:IPR002146) 0.157772320940060 0.912708480955752 0.381173602702971 1 -0.204749109985345 23.2156383846836 0.157772320940060 0.251840320716383
AT3G14075_at 5.18471270615052 5.24988967122021 5.31001244258075 5.13003998948784 5.58077098791188 5.29084262700014 5.0419721875371 5.17178517972798 5.45394770344108 5.46040665689057 5.16632933489923 5.22290008359953 5.14704853685105 5.45240795257113 5.31563969999606 5.48818584102187 5.42501073292068 5.15305742774204 4.97984654863481 0.179222119371079 0.193071478150628 0.182638278926959 0.169719646701676 0.176361142686490 0.196899206719295 0.175488100457197 0.178165998739611 0.179831339509201 0.179478796535154 0.172642722833639 0.172752515192277 0.169547323031591 0.183910379341738 0.169547323031591 0.173917107944312 0.179215210651398 0.182277140365946 0.186553445891324 3 3 - 4663880 4664315 4664081.091 4663609 4666975 - gene protein_coding_gene FALSE TRUE AT3G14075.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G16070.1); similar to Os02g0780700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048306.1); similar to Os01g0309900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042853.1); similar to Lipase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99539.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921); contains InterPro domain Lipase 3, N-terminal; (InterPro:IPR005592) 0.0820410285654557 0.912673129184581 0.38119138851964 1 -0.204779297457192 10.5421979343799 0.0820410285654557 0.0641815836810205
AT3G12950_at 6.41577460122352 5.71020222892065 5.8201801996561 5.87284197372421 5.40932397691236 5.91672991373575 4.79700798032156 4.88363871436789 4.73550887021292 4.3907333694862 4.79044376558534 4.57762483544448 4.64243536520782 4.41796917884486 4.72253123660726 4.7006963534553 4.88430011767735 4.69106896451725 5.14794113496889 0.223483383060171 0.222742148035874 0.223956149876566 0.228146701775762 0.227138591407728 0.231949832934420 0.218455736418789 0.216131105305314 0.224131453876244 0.223186896656627 0.217094764658562 0.217225255262402 0.216348175075746 0.218754286698906 0.217003094916557 0.217311698297981 0.22393637894526 0.218670648236121 0.218859454827726 3 3 - 4132805 4133472 4133051.636 4132535 4135141 - gene protein_coding_gene FALSE TRUE AT3G12950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45030.2); similar to Os08g0407200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061775.1); similar to OSIGBa0126B18.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66916.1); similar to OSJNBa0008M17.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD41791.2); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.111717868538414 0.912344001985433 0.381357003518872 1 -0.205060297186485 10.3214348746362 0.111717868538414 0.151417520812148
AT3G51610_at 7.90432467779867 7.94878178890004 7.8078289122967 7.87642491734849 8.1575372211705 7.72665207980705 7.81721831152978 7.62473670434137 7.27793740816078 7.03973815526613 6.84986119696273 6.9121415011787 7.0781839977641 6.72186755939063 7.18624681433707 6.87880500833698 6.9166874312189 6.93961676533479 7.21552752632276 0.161759345869049 0.160044576944192 0.163783505536779 0.157042767840289 0.154703963179123 0.168047911203102 0.155775358244799 0.158945854433403 0.179254115947216 0.161761034066098 0.154332471256946 0.157331644000272 0.157833389390667 0.166840123121282 0.153358667103909 0.162972339929637 0.159786194766506 0.158007877176808 0.161618347577651 3 3|0 -|/ 19150862 19152841 19151819.167 19150531 19153064 - gene protein_coding_gene FALSE TRUE AT3G51610.1 similar to Os05g0168400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054754.1) -0.0869813334605896 -0.912237721499825 0.381410494051453 1 -0.205151018202322 14.9145184004318 -0.0869813334605896 0.0828845164704414
AT4G24640_at 1.17945719621457 1.21036259905246 1.41874487140141 1.45655013491025 0.933071882818328 1.29593261495137 1.28245263033720 1.04353204614438 1.53634546317928 1.32463331383924 1.49730112706359 1.54357389336155 1.42523042779657 0.903289531844315 1.90263947420475 1.37127052316502 1.51270423287536 1.26584739149424 1.20404042903494 0.230782807495704 0.23016819674207 0.231065830906059 0.23016819674207 0.235304904923353 0.23250284700824 0.238102656003475 0.23016819674207 0.230326992734779 0.243352756682522 0.23016819674207 0.232744500806397 0.237847695205606 0.233641262189389 0.233298638468688 0.234100221104211 0.234125039115279 0.237948874742320 0.233734779254004 4 4|0 +|/ 12717889 12718784 12718271.3 12717798 12719027 + gene protein_coding_gene FALSE TRUE AT4G24640.1 APPB1; pectinesterase inhibitor Encodes AppB protein (AppB1). similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT5G50030.1); similar to pollen-specific protein Bnm1 [Brassica napus] (GB:AAB48480.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0849247156455218 0.912045175958276 0.381507414831335 1 -0.205315352267319 2.61888223560049 0.0849247156455218 0.075657816416564
AT1G16680_at 6.30822215408875 6.59125730074774 6.1934061212027 6.20496216973435 7.19994322668894 6.90853842403772 6.80087516663684 6.25153273565568 6.23034915024513 6.61898734139355 6.50775426084921 6.33193029637497 5.9854545876808 5.78420629492458 6.1286898506028 6.29829966136845 6.40024038494418 5.94803723364167 6.67815074102 0.218152509152402 0.206759091375658 0.207135507175662 0.20630075511408 0.213908135138748 0.207929443622162 0.210467752677290 0.212984225713046 0.204916705404548 0.213936361227177 0.205565357102634 0.204075948419522 0.226322896806863 0.209043143132159 0.204075948419522 0.206991801225878 0.208574090154731 0.216478700312833 0.209552825639413 1 1|0 +|/ 5704489 5705437 5705117 5702806 5705831 + gene protein_coding_gene FALSE TRUE AT1G16680.1 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative similar to DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative [Arabidopsis thaliana] (TAIR:AT1G79030.1); similar to S-locus protein 5 [Brassica rapa] (GB:BAA85454.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0986725967271087 -0.911969181367132 0.381545672637722 1 -0.205380204161564 12.8984616534414 -0.0986725967271087 0.118252989224506
AT2G39910_at 4.125451350727 3.69362024949733 3.76936172855076 3.37808213146246 4.48631740416403 3.27555051045938 4.08475178956561 4.07236593846336 4.0245919824981 3.54318431959543 3.58985919129977 4.08293138168725 3.72371057708562 4.06143318995599 3.4694759677001 4.04092969215313 3.58093492007631 3.30135405624882 3.71579516587442 0.201990396243966 0.196318797277337 0.199553835922209 0.195426636795927 0.194581250252389 0.194857150528533 0.201275941611856 0.212931329184937 0.202285049028631 0.193866186399050 0.205001964261466 0.200010951938915 0.209103630391017 0.193322721935885 0.197134736549381 0.192563933546624 0.200516754815193 0.201658781425215 0.195440932911393 2 2|0 +|/ 16668881 16669745 16669401.4 16667674 16670123 + gene protein_coding_gene FALSE TRUE AT2G39910.1 binding Identical to Hypothetical protein At2g39910 [Arabidopsis Thaliana] (GB:Q8GXP4;GB:O04194); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57231.1); similar to Os06g0694100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058439.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.148290627850473 -0.911886583454438 0.381587257791547 1 -0.205450685975371 7.6069471935355 -0.148290627850473 0.232543726778473
AT1G75580_at 2.98154652728583 3.26973909829202 2.39060405549103 2.02856460594589 2.21014317364287 2.68773283006444 2.83261016050213 3.48871924389913 2.41154471113367 2.54001000080482 2.92093213808253 2.92625482646260 1.68103158897370 2.07619256555401 3.63170770468991 2.23294179300247 2.84695173449532 2.86589244380556 1.24558756406581 0.191063945076450 0.195061460874365 0.195929862823997 0.198963284422903 0.191063945076450 0.197570306545994 0.197471864374369 0.196059665287563 0.199889982311898 0.191063945076450 0.192699782839959 0.194257888867814 0.201957684970446 0.196858739996177 0.192604414791491 0.193346986184575 0.191776791969246 0.194045699315861 0.207401449882297 1 1 + 28381206 28381476 28381317.273 28381122 28381839 + gene protein_coding_gene FALSE TRUE AT1G75580.1 auxin-responsive protein, putative similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G34760.1); similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G19830.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.115934291913443 -0.911604958312135 0.381729070064837 1 -0.205690959519873 5.09293355758276 -0.115934291913443 0.161664785463504
AT1G75420_at 5.20214402085911 5.27237934590194 4.43805186945586 4.84018149970614 5.2483619915643 5.00274759480478 4.98472987851461 5.42517882192094 5.25312165717372 4.81485864703816 5.62632478472535 5.64431912655205 5.11121060090753 5.26376637403422 5.50581134201876 5.46521453584862 5.02007556295397 4.18189140788025 5.17647949039998 0.203157343974837 0.199205287835405 0.200765967280918 0.196201501793733 0.198435141956519 0.210029896931484 0.198483058097525 0.196201501793733 0.202137929580662 0.20267438672237 0.19687454739531 0.198995540933659 0.196201501793733 0.199711548857302 0.200795090357071 0.200642422060614 0.215928269819030 0.206066425435343 0.204654600377606 1 1 + 28310567 28310952 28310731 28308958 28311164 + gene protein_coding_gene FALSE TRUE AT1G75420.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G19710.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Putative first mannosyl transferase, WbaZ [Burkholderia xenovorans LB400] (GB:YP_558793.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.0964660796276169 -0.911497294301408 0.381783294011558 1 -0.205782798391736 10.2061285353755 -0.0964660796276169 0.112280733735739
AT2G02310_at 1.36016766257317 1.16035028195584 1.26686517091137 1.39279982174669 0.79915419596232 0.819158914745187 0.813053044807084 1.36951632906899 1.17131595298962 1.12834533510796 0.904471179550928 1.01202070514232 1.21138320212387 1.21293239615129 1.06041570731683 0.876477820524223 0.99653962022504 1.35284604724808 1.17955129925335 0.19931735624695 0.202192380792631 0.201147704697169 0.204787743634783 0.199332270738867 0.200620447371985 0.197747046647781 0.200203105967087 0.200943380428825 0.204173619121075 0.201778629613042 0.201121145367674 0.196243396090865 0.197872593572981 0.198831610219277 0.196243396090865 0.201484416459094 0.198807598375164 0.197660788546484 2 2 - 608811 609780 609249.273 608758 610129 - gene protein_coding_gene FALSE TRUE AT2G02310.1 ATPP2-B6 (Phloem protein 2-B6) similar to ATPP2-B2 (Phloem protein 2-B2) [Arabidopsis thaliana] (TAIR:AT2G02250.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.0938144990457664 -0.911479950202132 0.38179202970574 1 -0.205797592285975 2.24169485967248 -0.0938144990457664 0.104671337308336
AT1G18130_at 1.18103566771443 1.06091904033571 1.5511982749717 1.33705775458457 0.969836578983 1.38953157712058 1.17103776389926 1.48399062888837 1.39790880973401 0.976124867218528 1.32677903639530 1.02083727119479 1.2071027795402 1.54247955042710 0.983791266961042 1.05804230322355 1.45309101028155 1.27698155674057 1.03631434974529 0.221335671519222 0.225112717737818 0.234488366345768 0.226445739233121 0.216480282810587 0.230301489073003 0.216480282810587 0.226000198747935 0.221924861814462 0.219249091019251 0.219910067986205 0.220704217561551 0.223279149525608 0.225907914247052 0.219774200123278 0.218895404379093 0.222019187688115 0.234547902464265 0.219227317094886 1 1|0 +|/ 6235911 6238768 6238185.222 6235888 6238792 + gene protein_coding_gene FALSE TRUE AT1G18130.1 tRNA synthetase-related / tRNA ligase-related similar to threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) [Arabidopsis thaliana] (TAIR:AT5G26830.1); similar to Os08g0295300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061475.1); similar to threonyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:CAC79651.1); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Threonyl-tRNA synthetase, class IIa; (InterPro:IPR002320) 0.0922578462425456 0.911383051222838 0.381840837346045 1 -0.205880239249937 2.45328629701793 0.0922578462425456 0.100068035044025
AT3G61800_at 5.37062172858761 5.20002327906226 5.11978035750654 5.43787503333251 5.17207994072777 5.15140306185253 4.57818162954578 4.59057246998729 5.26883353790017 4.57563639912614 4.62800517439313 4.98884475969194 4.43685465410736 5.06126807167673 4.83297017765201 5.03149254666472 4.94652000917018 4.65757891613701 4.99136646013419 0.174753442585477 0.17840582484234 0.177483329273221 0.174255368908045 0.177212882015339 0.175252675306901 0.189217319518758 0.176026617631820 0.174919257296888 0.182207413405194 0.176181594288853 0.172648087381648 0.175949662954281 0.177596688960768 0.177975770735813 0.176069419298393 0.18996231420236 0.174012911438783 0.178051868525277 3 3 - 22885699 22886264 22886015.727 22885530 22887821 - gene protein_coding_gene FALSE TRUE AT3G61800.1 similar to hypothetical protein DDBDRAFT_0189958 [Dictyostelium discoideum AX4] (GB:XP_646872.1); similar to Os02g0293800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046601.1); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.0815489055961194 0.911354432898246 0.381855253121677 1 -0.205904646933991 9.96167748144535 0.0815489055961194 0.0626039735199262
AT4G25450_at 6.85893062336757 6.88349793422881 6.34819277739145 6.41439661382717 6.82941061517072 6.18505836305498 6.77789706122824 6.94285829978797 5.7606904200133 5.98148592919402 5.59048364431721 5.94766718464414 6.40340118595787 6.07976611619633 6.3689487563155 6.43140941608762 6.44545764789848 6.09887015244962 6.09159361965349 0.166264720499360 0.170652947381242 0.167959085144205 0.167155236923651 0.168523191659807 0.172761937893809 0.170521285371938 0.17285729715473 0.172104690260893 0.172671945606426 0.169554392054995 0.165189686370301 0.164298332281175 0.174547525854187 0.164269799134289 0.165204828633804 0.172446691930718 0.171842714955827 0.177554204311453 4 4|0 -|/ 13009872 13013722 13011849.267 13009705 13013978 - gene protein_coding_gene FALSE TRUE AT4G25450.1|AT4G25450.2|AT4G25450.3 ATNAP8 (Arabidopsis thaliana non-intrinsic ABC protein 8); ATPase, coupled to transmembrane movement of substances|ATNAP8 (Arabidopsis thaliana non-intrinsic ABC protein 8) member of NAP subfamily Identical to Non-intrinsic ABC protein 8 (TAP-related protein 1) (NAP8) [Arabidopsis Thaliana] (GB:Q8LPQ6;GB:O65615;GB:Q67ZJ9;GB:Q67ZN9;GB:Q682F1); similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to Os07g0464600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059586.1); similar to P-glycoprotein [Homo sapiens] (GB:AAA59575.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439)|Identical to Non-intrinsic ABC protein 8 (TAP-related protein 1) (NAP8) [Arabidopsis Thaliana] (GB:Q8LPQ6;GB:O65615;GB:Q67ZJ9;GB:Q67ZN9;GB:Q682F1); similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to Os07g0464600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059586.1); similar to P-glycoprotein [Homo sapiens] (GB:AAA59575.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0976854319644945 -0.911260146180342 0.381902750430308 1 -0.205985056566359 12.7127005373089 -0.0976854319644945 0.115751261705560
AT3G19940_at 1.25262163645309 1.53168489649882 1.81926660143192 1.72725190822950 1.47902414293939 1.28585520599651 1.34939978557759 1.28500401845986 0.717396279956785 1.48190526690296 1.05165709223302 0.993908475440804 1.5451932612585 1.02405626868459 0.95369854458611 1.16514752333176 1.25161788868652 1.09629708826380 1.38789309337195 0.202003348312091 0.204851972397037 0.219133226688766 0.204940396431669 0.208154186173115 0.209100855383163 0.202003348312091 0.205831686346721 0.214690292554086 0.213607638086476 0.204702414214942 0.205434417626588 0.204599534661878 0.203795411025770 0.202003348312091 0.204753566773246 0.204702827515385 0.206045811409186 0.207440198423046 3 3|0 +|/ 6939253 6939820 6939521 6938217 6939981 + gene protein_coding_gene FALSE TRUE AT3G19940.1 sugar transporter, putative Identical to Sugar transport protein 10 (Hexose transporter 10) (STP10) [Arabidopsis Thaliana] (GB:Q9LT15;GB:O81707); similar to STP11 (SUGAR TRANSPORTER 11), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G23270.1); similar to STP4 (SUGAR TRANSPORTER 4), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G19930.1); similar to monosaccharide transporter (STP9) [Arabidopsis thaliana] (TAIR:AT1G50310.1); similar to putative monosaccharide transporter 1 [Petunia x hybrida] (GB:AAC61852.1); similar to monosaccharide transport protein 1 [Zea mays] (GB:AAT90503.1); similar to monosaccharid transporter [Nicotiana tabacum] (GB:CAA47324.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.081318675734365 0.91070251931721 0.382183741827315 1 -0.206460467987792 2.6317278067256 0.081318675734365 0.0618665122290844
AT2G27340_at 4.67699408450432 4.48670522498067 4.2021849556765 4.20111218760847 4.27109938007486 4.32794995425452 3.61925369763297 4.19502733856949 3.75121501874148 3.85429497118357 4.1664062322253 4.24206797238718 3.84971366042513 4.19512226795545 4.59857966765659 4.27325569719522 4.24044713700406 4.10883352429560 4.47686502501992 0.255476339878213 0.256556045103803 0.254736725682541 0.247383151894409 0.260141396971507 0.257087308399106 0.260266556550804 0.262625024582191 0.262828921913045 0.239677264033192 0.250280070047773 0.239677264033192 0.254718631478811 0.246704145823748 0.239677264033192 0.239677264033192 0.261866127430716 0.270238067410205 0.251175201480441 2 2|0 +|/ 11704601 11706171 11705490 11703815 11706302 + gene protein_coding_gene FALSE TRUE AT2G27340.1|AT2G27340.2|AT2G27340.3|AT2G27340.4 similar to N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-related [Arabidopsis thaliana] (TAIR:AT3G58130.2); similar to Uncharacterized LmbE-like protein, COG2120 containing protein [Tetrahymena thermophila SB210] (GB:XP_001033028.1); similar to Os04g0678800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054275.1); contains InterPro domain N-acetylglucosaminylphosphatidylinositol deacetylase; (InterPro:IPR003737) 0.093968232279898 0.910554278079795 0.382258465808996 1 -0.206586811329934 8.36592165701675 0.093968232279898 0.105401268895153
AT3G55480_at 6.79544624792694 6.98276254855783 6.49277227910929 6.7438636439524 6.82529210624617 6.58223324967671 6.7959397921045 6.7494481600832 7.01073668619036 6.93640800453508 7.02707150441064 7.31230727434295 6.5375731252266 6.30012310969296 7.27089109500615 7.10909189595305 6.5295815184869 7.02193251661311 6.70734364374414 0.227421129305922 0.222944010623542 0.227694534466101 0.239179282727341 0.221007473731385 0.225112238958213 0.220633202527933 0.220934415363532 0.229655633318402 0.225698860421689 0.236567976095698 0.22194876617011 0.217425562967174 0.227382941087536 0.227506355858431 0.219541948847537 0.230904424917547 0.226895240704471 0.223429620179462 3 3 - 20577361 20578046 20577745.273 20577226 20582227 - gene protein_coding_gene FALSE TRUE AT3G55480.1|AT3G55480.2 adaptin family protein similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G11380.1); similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G23460.1); similar to putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD87374.1); similar to Os01g0973300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045546.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0830584036393138 -0.910552099526955 0.382259564028743 1 -0.206588667941411 13.632670228352 -0.0830584036393138 0.0690861765643419
AT3G50750_at 8.71500382420459 8.71417905574511 8.32104675004269 8.51086274639864 9.3692850333986 9.06191568712734 9.0724526114183 8.74981726000759 9.08307353452227 8.4689099370562 8.82175739874398 8.40224025617163 8.89155420687334 8.67845924956393 8.6347879927302 8.84798361382612 8.30400064887436 8.81828656561332 9.0038801817578 0.126046725058646 0.123247152710825 0.133051477413176 0.126285520119293 0.125108892183345 0.131983720674585 0.129088127524494 0.127709098178737 0.147037012132729 0.13209678727948 0.127789678152250 0.125204835119552 0.127188159354702 0.142436744880291 0.123257008989945 0.123247152710825 0.145746875428067 0.127402791394747 0.129326151021335 3 3 - 18873143 18873677 18873450.818 18872820 18874215 - gene protein_coding_gene FALSE TRUE AT3G50750.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 1 (BEH1) [Arabidopsis Thaliana] (GB:Q9S7F3); similar to BZR1 (BRASSINAZOLE-RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT1G75080.2); similar to Os07g0580500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060100.1); similar to mature anther-specific protein LAT61 [Lycopersicon esculentum] (GB:AAK71662.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) -0.087078221582281 -0.910388102917906 0.38234224191288 1 -0.206728418713638 17.5777395173737 -0.087078221582281 0.0838199831019883
AT4G03830_at 1.63448008440570 1.91559711784730 1.60660546319633 1.62813618337511 1.08496095469734 1.64178364705504 1.11783383326187 1.41842317067004 1.39561468346888 1.24020328317215 0.985071602819072 1.47271754749071 1.04110798850367 1.28307624743578 1.41165059549430 1.43276205739374 2.26769950617120 1.57731625862653 0.977780865543026 0.207406795703865 0.208797344988915 0.211097867182496 0.209825800777530 0.208142154050959 0.207465992826132 0.208429054565387 0.210474596959580 0.207071444395210 0.207598473604971 0.206639484157080 0.206639484157080 0.207697337969554 0.211080804474419 0.211398691840044 0.215964933787243 0.207386771597198 0.209422031394962 0.206639484157080 4 4|0 +|/ 1791673 1792420 1792089.4 1790438 1792456 + gene protein_coding_gene FALSE TRUE AT4G03830.1 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G46696.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF601; (InterPro:IPR006736) 0.0990901459826253 0.910298073344855 0.382387635095079 1 -0.206805128927130 2.82520664159021 0.0990901459826253 0.119882776047316
AT1G47710_at 9.27430456635572 9.4337658093995 8.7734236075964 8.66180402731786 8.79958448635591 8.65481720413479 8.52369716601207 8.73969630689719 6.77084154044594 7.35743207747352 7.54700530176683 7.55330900571888 7.1732791696108 7.50841692069169 7.61535333254896 7.29725678392014 7.21337542104023 7.58213219155538 6.88902668752785 0.217836448663127 0.220776197669744 0.215531190361889 0.219565050605755 0.220960602238630 0.215531190361889 0.222318861558063 0.222594697270734 0.223872225738971 0.219455957454687 0.215531190361889 0.220555083819884 0.219083405939377 0.216345187257280 0.219019462104897 0.226604305880891 0.230438836428938 0.222066348447445 0.227283427888222 1 1 + 17561924 17562475 17562213.273 17560649 17562709 + gene protein_coding_gene FALSE TRUE AT1G47710.1 serpin, putative / serine protease inhibitor, putative similar to serpin, putative / serine protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G45220.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) 0.0800203082796496 0.910288576830129 0.382392423486524 1 -0.206813220112045 16.0786530389282 0.0800203082796496 0.0562094797663859
AT2G34980_at 1.31964651152417 1.08039074349664 1.15558896362707 0.866206239680341 1.28801944170441 1.00259491157224 1.43647715815274 1.40909748667546 1.04702155482375 1.41667702298344 1.19490312416210 1.35723836617115 1.27744919258585 1.58245384914066 1.32764736796047 0.955698233327457 1.20487601201444 1.48252107239611 1.24867165648732 0.214975730708482 0.208820207446043 0.215853939114258 0.209976833053757 0.204181475639936 0.211426239840953 0.206962814382434 0.204181475639936 0.208085162265827 0.204578193792323 0.210718072999769 0.213395086160071 0.208352393783689 0.211086816648874 0.209714751325246 0.206401455637133 0.215613777511139 0.204770749557323 0.205367872387534 2 2 + 14756371 14756804 14756570.182 14756046 14756957 + gene protein_coding_gene FALSE TRUE AT2G34980.1 SETH1; transferase Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway. similar to Os02g0622200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047466.1); similar to GlcNAc transferase [Dictyostelium discoideum AX4] (GB:XP_637791.1); contains InterPro domain Phosphatidylinositol N-acetylglucosaminyltransferase; (InterPro:IPR009450) -0.0864544641806443 -0.910129752437201 0.382472513130157 1 -0.2069485304732 2.46240525554644 -0.0864544641806443 0.0817584835850935
AT1G36020_at 2.52638689209906 2.74744078757840 2.67303734639725 3.00498852074943 2.35001922654843 2.76597358229768 2.32631786293017 2.68856275930356 3.08043409330334 3.31853814444602 2.63833708803499 2.51864300494267 3.08926165968366 2.67834951805288 3.10400097231704 2.89849116554767 2.55622869683755 3.22820488655368 3.08664676302673 0.194218575633521 0.199527682299336 0.186584017822234 0.194009947591347 0.194407720291786 0.186584017822234 0.192552069518314 0.192281485059466 0.192786222387938 0.18759228167305 0.193539259686575 0.192545686853306 0.186584017822234 0.186584017822234 0.197054232500102 0.189962006236946 0.197887263599655 0.20280490889831 0.20361161250924 1 1 - 13435147 13435513 13435285.3 13435131 13435552 - gene protein_coding_gene FALSE TRUE AT1G36020.1 similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G35530.1); contains domain gb def: F15O4.40 (PTHR14025:SF5); contains domain FAMILY NOT NAMED (PTHR14025) -0.0983028913710158 -0.910111484630014 0.382481725706285 1 -0.206964092439099 5.63574718436548 -0.0983028913710158 0.117791103003576
AT2G02440_at 2.68339822690680 2.53630689207582 3.10565685920411 2.82770979912123 2.93669599258767 2.71206497811613 3.01882381386502 3.03505280141747 3.40958818873734 3.48432254737226 2.96244046922829 2.93118445216767 2.859956146279 3.41429826228661 2.94488678146368 3.20658072619402 2.89067654578632 3.54869140403277 3.11682658308211 0.201500238824562 0.195762231803041 0.191655441181402 0.201122353655941 0.196835324868756 0.188556508362110 0.190426433243271 0.192371591730738 0.201060974869205 0.197232285215463 0.189038840120530 0.196387846876504 0.191793036570933 0.193430401096732 0.187819652876401 0.192815483577531 0.194041734839314 0.192986998966051 0.200821391717364 2 2|0 +|/ 638013 639280 638669.2 638011 639304 + gene protein_coding_gene FALSE TRUE AT2G02440.1 unknown protein -0.0824683088048846 -0.909977888631905 0.382549103777007 1 -0.207077892050115 6.07283956449196 -0.0824683088048846 0.066937244580931
AT2G21740_at 0.388543408795424 0.188332527792168 0.481024895886186 0.997432274928193 0.568632753028718 0.569189970410578 1.02985400589276 0.757352872021848 0.546881551814357 0.516829807690409 1.22539605821418 0.113358150708487 0.876002412814165 0.641546843102045 1.09055460792551 0.571028207208386 0.975803286808838 0.98094313847733 0.987051717591102 0.230483133075632 0.224761806792808 0.240032839211117 0.250347028867301 0.224407049476102 0.236364458158223 0.232389400547436 0.230021951944322 0.238137173233064 0.230599928241126 0.226531974292301 0.224407049476102 0.231744488904173 0.230973401097951 0.228116732984955 0.227892080946968 0.228969806874813 0.257774054528983 0.226925356413252 2 2 - 9289145 9289350 9289263.714 9289066 9289443 - gene protein_coding_gene FALSE TRUE AT2G21740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21750.1); similar to Os11g0168000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065842.1); similar to hypothetical protein LOC_Os12g06970 [Oryza sativa (japonica cultivar-group)] (GB:ABA95905.1); contains InterPro domain Protein of unknown function DUF1278; (InterPro:IPR010701) 0.094395332864973 0.909973682047693 0.382551225469015 1 -0.207081475068572 1.36900372885581 0.094395332864973 0.106820878099508
AT4G30850_at 1.69102286262384 1.90266649051723 1.05703252546975 1.6918365232815 1.61570949251864 1.32004321899234 0.876189704607652 0.440104660253897 2.21868125876143 1.64154036850915 2.30969032541251 1.54446059799602 1.53847669008236 2.30686012302745 1.53498781869668 1.73672257799935 0.932812003584408 2.36520017958725 1.41317524402793 0.247825309300766 0.258447482128005 0.247825309300766 0.247825309300766 0.247825309300766 0.247825309300766 0.249556098436002 0.24790018035492 0.247825309300766 0.262440376220326 0.252125246305841 0.2539505583563 0.253792866684290 0.263682816023323 0.248197473531423 0.256274217635426 0.247825309300766 0.251604616642959 0.249053870874347 4 4 - 15020562 15020852 15020690.571 15020188 15022451 - gene protein_coding_gene FALSE TRUE AT4G30850.1|AT4G30850.2 HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) heptahelical transmembrane protein homologous to human adiponectin receptors and progestin receptors similar to HHP3 (heptahelical protein 3), receptor [Arabidopsis thaliana] (TAIR:AT2G24150.1); similar to Os06g0643700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058180.1); similar to Hly-III related proteins [Medicago truncatula] (GB:ABE86349.1); contains InterPro domain Hly-III related proteins; (InterPro:IPR004254) 0.109755921506824 0.909854311842318 0.382611436140464 1 -0.207183144501859 3.09505080810698 0.109755921506824 0.147387097493208
AT1G35730_at 1.62047414761556 1.26674626051804 1.95923599605737 1.82320576848625 1.23373553099136 1.63765932296419 1.35092630816973 1.38539575869685 1.9952430353753 1.67977323622263 1.22666373270268 1.46714919524815 1.17791564399827 1.23653628119026 1.45893033548635 1.37574280810746 1.46029986823498 1.65239954354677 1.78814821397692 0.241956196578745 0.234109505510381 0.242470716850295 0.242721461821269 0.232468794180049 0.23320672966861 0.237963319795156 0.239420147513736 0.256588095202419 0.232468794180049 0.245921134205439 0.234167955759006 0.242773337617819 0.233655289525850 0.239292731670595 0.235769363748379 0.242765098970139 0.250975660308247 0.246840714196651 1 1 - 13228564 13229370 13228999.727 13228536 13231008 - gene protein_coding_gene FALSE TRUE AT1G35730.1 APUM9 (ARABIDOPSIS PUMILIO 9); RNA binding similar to APUM10 (ARABIDOPSIS PUMILIO 10), RNA binding [Arabidopsis thaliana] (TAIR:AT1G35750.1); similar to Os03g0191700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049234.1); similar to Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] (GB:CAL57619.1); similar to Os12g0493900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066803.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.0907633082929186 -0.90961013160685 0.382734622017242 1 -0.207391081332617 3.13617713898208 -0.0907633082929186 0.096036796565958
AT1G76760_at 2.74186879145862 3.32076545585798 3.03676990400140 3.44412784157845 3.14997550363551 2.72913896980103 2.84198059377671 2.67785460726899 2.65573985116762 3.09931651546243 2.75820060850247 2.31542387446370 2.55550081996210 2.37876885720736 1.93182436909192 2.47206334605798 2.30040422933786 2.61739185468638 2.72968430753223 0.238031484349834 0.246590168252311 0.236647968432457 0.235415493439649 0.236694029382268 0.237460843958168 0.231820796436909 0.237440161368608 0.240585480740413 0.234425692527809 0.241825957268801 0.243217624263239 0.231820796436909 0.232698650691108 0.241724937789915 0.237567406700139 0.244083410896969 0.239052277081470 0.234531240480561 1 1|0 -|/ 28816796 28817791 28817343 28816579 28817964 - gene protein_coding_gene FALSE TRUE AT1G76760.1 ATY1 (Arabidopsis thioredoxin y1); thiol-disulfide exchange intermediate similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE83162.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) -0.108831976905091 -0.909188202142268 0.38294754560175 1 -0.207750272753848 5.61503227657291 -0.108831976905091 0.145314668421921
AT2G30680_at 0.767500546833445 0.823786756869565 1.16158797569415 0.92886462599165 0.432505565259909 0.729727428934633 0.458906756912149 0.726249244648343 0.769302295906286 0.639390031022113 0.802541028290539 0.681435292290143 0.853651721003674 0.916743537161525 0.686708621882833 0.537927750170233 0.879094640400442 0.765327134814525 0.728579758755761 0.195949270395950 0.192144025007173 0.195251696470268 0.197771705020779 0.194701281251818 0.192560322828705 0.193778759546843 0.193251801197409 0.204658098484165 0.195065906223853 0.19559633635054 0.188910925618025 0.197225929444853 0.190725843940382 0.194710998266683 0.194011336018760 0.190861677446794 0.195767721079305 0.191914294523182 2 2|0 +|/ 13080817 13082004 13081301.2 13080725 13082473 + gene protein_coding_gene FALSE TRUE AT2G30680.1 similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1) 0.0860326299222806 0.909056586712275 0.38301398131966 1 -0.207862288952536 1.49256748479954 0.0860326299222806 0.0806407134997688
AT1G18140_at 2.06793222710068 1.93426181315465 2.06678517195218 1.64536685353279 2.09331740763951 1.83549144044224 1.97799908540510 1.66270955285475 2.33232456217436 2.08280320193702 2.41573369660644 1.92414872143795 2.4066730626591 1.67139318525784 1.73811101510771 1.89747770503055 2.59167676933305 2.39406111614245 2.53317690365532 0.171130347758028 0.169544959790387 0.169093138395457 0.173492155658067 0.174377521207945 0.178694914129183 0.171277008298549 0.175930362950861 0.170606446750665 0.173662920420042 0.173802453292936 0.168631415427446 0.167748746737932 0.172627342741731 0.168843803720064 0.166260618440677 0.167269340340073 0.168569291699468 0.168205863721665 1 1 - 6238979 6239554 6239228.545 6238837 6241429 - gene protein_coding_gene FALSE TRUE AT1G18140.1 LAC1 (Laccase 1); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis). similar to LAC17 (laccase 17), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G60020.1); similar to laccase [Pinus taeda] (GB:AAK37825.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.093338799106231 -0.908983802591638 0.38305072413346 1 -0.207924228676534 4.1334884264448 -0.093338799106231 0.104026280228882
AT1G16860_at 5.01886940320274 5.32345204453868 4.03085172409505 4.5907245862431 4.19701669414222 4.56027637991483 5.02715286647834 5.98982030253914 5.65981761236032 4.88075598469862 6.44786950917153 6.17286378561941 6.24042273654311 6.19573511277646 6.31483107476567 6.00150430051132 5.35403903092301 5.40084509021411 5.34300894243908 0.178127788979977 0.177141945072961 0.189056795074216 0.182952468706765 0.177626068327402 0.185634057964283 0.183426487214849 0.180667726447277 0.182035842649622 0.179145422307673 0.184111568185768 0.179898590302603 0.177473012698371 0.186037330545529 0.177294268257824 0.180735449301404 0.189903587646227 0.183421448051578 0.194549603564685 1 1 + 5769438 5770149 5769768.909 5767293 5770552 + gene protein_coding_gene FALSE TRUE AT1G16860.1 merozoite surface protein-related similar to balbiani ring 1-related / BR1-related [Arabidopsis thaliana] (TAIR:AT1G78880.1); similar to Os08g0230200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061297.1); similar to Pentaxin [Medicago truncatula] (GB:ABE85291.1); similar to Os04g0606500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053801.1); contains domain UBIQUITIN SPECIFIC PROTEASE UBPY-RELATED (PTHR10420:SF18); contains domain UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED (PTHR10420) -0.136809995595678 -0.908169510673758 0.383461962436249 1 -0.208616909257098 10.4975411717601 -0.136809995595678 0.209454372938432
AT1G70650_at 2.37129913238423 2.12195438851143 2.35514422706337 2.53605049424973 2.26578762194319 2.19103245326840 2.00580705511687 2.00203640499079 2.20538898839627 2.35694108634081 2.14883808305375 1.69876416884194 2.13873995740086 1.82660663240356 1.96035672754429 1.75278883077947 1.83201600388352 2.1671155781127 2.37196309353738 0.177417192875493 0.179783566983796 0.184878503805721 0.180404053584071 0.182933410309130 0.181896984813500 0.185210965353700 0.180089212932673 0.181227496366867 0.187388635209717 0.183028901511375 0.19264974496982 0.177913699250585 0.183489858731417 0.196178304561337 0.178648552360692 0.181376167512284 0.189805800653104 0.182810093985001 1 1|0 +|/ 26643020 26643569 26643349.5 26641739 26643867 + gene protein_coding_gene FALSE TRUE AT1G70650.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G55040.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE26599.1); similar to Os03g0712200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051062.1); similar to Os03g0708900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051041.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -0.0795241772293184 -0.907882492672842 0.383606987489415 1 -0.208860936732239 4.357181124113 -0.0795241772293184 0.0548619946214966
AT2G01260_at 6.5973124317198 7.11961552517577 7.04936017495364 7.18835284026608 6.94976511575348 7.03810196774802 7.90861034462806 7.92336846530813 6.73133142571788 7.40172558615757 7.11725349751595 7.53983182047684 7.40832598880676 7.37493197192089 6.87053924141752 7.72303991692372 7.60710431459921 6.82069996309299 7.33877568032416 0.173092748539202 0.168472305543847 0.172361374998507 0.182720569846025 0.176153294656495 0.172127129871527 0.170505348710609 0.176977023657998 0.183636930174729 0.179361524554218 0.174859578787685 0.171887474390669 0.181539037792254 0.172702300386299 0.180600093833276 0.168472305543847 0.168472305543847 0.186467400304401 0.180535738660584 2 2 - 135528 136761 136069.636 135243 137805 - gene protein_coding_gene FALSE TRUE AT2G01260.1|AT2G01260.2|AT2G01260.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15030.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO39871.1); similar to Os01g0513400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043182.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46235.1); contains InterPro domain Protein of unknown function DUF789; (InterPro:IPR008507) -0.0901966958749703 -0.907870021771135 0.383613289682245 1 -0.208871538216976 14.4543075598995 -0.0901966958749703 0.0948081652202397
AT4G05270_at 1.19272033089950 0.986556814074282 1.27973779308158 1.67768720554783 0.846486206205726 0.984378133843892 1.21755594263389 1.44871430911043 1.85130825133124 1.63329588462879 1.53643138565625 1.38958844058189 1.86334065430977 1.86665637284425 1.12981985578525 1.41921400069188 1.32154562471129 1.86603312338281 1.65255521210895 0.181184935342636 0.181184935342636 0.184898767713529 0.186643624561903 0.181386237159980 0.181951136365312 0.185813482374662 0.182678780030400 0.194574858210799 0.187819076926177 0.181184935342636 0.186376352246335 0.182473828825871 0.191194371761859 0.188736877839122 0.186796710341627 0.193544925580151 0.20815593428704 0.189032124888649 4 4 + 2694962 2695294 2695126.545 2694937 2695326 + gene protein_coding_gene FALSE TRUE AT4G05270.1 ubiquitin family protein similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT4G05310.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.0888111408103353 -0.907604662771104 0.383747406501131 1 -0.209097090009897 2.83496215772552 -0.0888111408103353 0.0904722607047121
AT1G27430_at 4.43902554757663 4.91138844395962 4.46095096045329 4.67887425690953 4.99021090597404 4.24698211736976 4.63390136188613 4.78250074927035 4.62650396021325 4.76109254740448 4.6535650869396 4.77790278088204 4.68386890953222 4.85261973843503 4.21667035259988 4.67729706250732 4.23759826038270 4.28050062464259 4.64837132196755 0.208536978715767 0.206434077727301 0.206544424648709 0.202535719575819 0.201657756504733 0.218639722658586 0.207356284091761 0.204432845034938 0.230805169319056 0.209180439626337 0.210724025473581 0.205959813078121 0.21190445009438 0.208003476470881 0.210544812487331 0.203345070623130 0.22198726296293 0.215179743358838 0.201127031668116 1 1 - 9521062 9521816 9521469.091 9520898 9526915 - gene protein_coding_gene FALSE TRUE AT1G27430.1 GYF domain-containing protein similar to GYF domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24300.1); similar to Os07g0137900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058856.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83483.1); contains InterPro domain GYF; (InterPro:IPR003169) -0.114301278350724 -0.907330942165052 0.383885783771144 1 -0.20932969045332 9.25605869051755 -0.114301278350724 0.159086854801526
AT3G53950_at 3.7748321050695 5.36172719697503 3.29482887669504 3.39232267536819 5.28673086492945 4.84713632692895 4.16485096919985 4.91793041183246 4.83034406620166 4.73363008162222 5.02039363038593 5.23112075323689 4.47671186267481 4.73418438311578 5.28587781343886 5.03582907208129 3.83418539242084 4.69458074974807 4.88002255404184 0.231253865825992 0.223108831189627 0.225999502408647 0.231007097875325 0.233367405159700 0.225971544078509 0.228307176291911 0.228261627593773 0.228007018171674 0.222659578786368 0.231340123168096 0.223431399505196 0.220751290689857 0.241835300540554 0.225575189335705 0.220609123584365 0.227993419410886 0.233295291373804 0.224846447355247 3 3 + 19987752 19988259 19987991.182 19986597 19988417 + gene protein_coding_gene FALSE TRUE AT3G53950.1 glyoxal oxidase-related similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT1G75620.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Glyoxal oxidase, N-terminal; (InterPro:IPR009880) -0.187567797469784 -0.907010538301381 0.384047805713141 1 -0.209601885457991 9.181932940588 -0.187567797469784 0.313802703076291
AT1G19450_at 10.2756644949940 10.2639779546313 10.7331600769791 10.7970936211436 11.2959816849738 10.9632033455070 11.8103197520715 11.5446998602282 11.8863608008089 11.6993925212592 12.2325490570362 11.5816575686933 11.8144247583843 12.1083420235452 11.7000416452707 11.9334027229578 11.8002347457165 11.8529633523343 11.4645573304169 0.079270731197678 0.0743701384044774 0.0790094377925294 0.0770447199843497 0.0708560866869724 0.0767029194023497 0.0730663052841238 0.0767607860706752 0.0798091818202423 0.0727288979034333 0.0707121722704133 0.0706281007221334 0.0756962372229314 0.0707886180470519 0.0748538345220004 0.0706281007221334 0.0737050752301374 0.0775133589093002 0.0721633472377604 1 1|0 -|/ 6731707 6732728 6732118.25 6731425 6734873 - gene protein_coding_gene FALSE TRUE AT1G19450.1 integral membrane protein, putative / sugar transporter family protein Identical to Sugar transporter ERD6-like 4 [Arabidopsis Thaliana] (GB:Q93YP9;GB:Q9LN48); similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G75220.1); similar to 10A19I.3 [Oryza sativa (japonica cultivar-group)] (GB:AAD39600.1); similar to Os05g0579000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056416.1); similar to integral membrane protein [Beta vulgaris] (GB:AAB53155.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.0841046333751125 0.906475665891698 0.384318386701889 1 -0.210056097706783 22.7412070330180 0.0841046333751125 0.0745380455453266
AT1G13290_at 2.39440676221341 2.41120856667104 2.2606497195834 2.42961604251701 2.26400967170539 2.46322669696105 2.26531480724999 2.37473269187528 2.7019900207281 2.72217144508245 2.29091770387024 2.28425828531036 2.80974359733289 2.41157970331219 2.30618529363802 2.544915799252 2.26402522777090 2.89942103671373 2.45304120940514 0.201931149162267 0.202192182561097 0.208332199324328 0.208013178027223 0.207889935871221 0.200530162961707 0.215571989454666 0.208945051558662 0.207907920627723 0.213578077407579 0.204008052923629 0.201483702866251 0.207141636631241 0.204994688602883 0.200530162961707 0.204745168240258 0.200587694179474 0.200530162961707 0.211389745607002 1 1 - 4550383 4551177 4550741.636 4550150 4551617 - gene protein_coding_gene FALSE TRUE AT1G13290.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) protein (WIP2) [Arabidopsis thaliana] (TAIR:AT3G57670.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93767.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0781967842412853 -0.905827623427623 0.384646396587244 1 -0.210606108999043 4.90895314783304 -0.0781967842412853 0.0490974153570909
AT1G55840_at 10.1722792278080 9.93217941743137 9.96615690684236 9.92168544416515 9.9880723980815 9.87364217767857 9.89973084805606 9.90640246497215 9.4306803140346 9.80261941004398 9.78698838360974 9.79350919194283 9.71303758696968 9.77189464325116 9.88227521235053 9.86735804928558 9.8548589616172 9.94456461660962 9.6598670780424 0.0905276134226587 0.088932800919604 0.0876977892558975 0.0860562203895263 0.0904992239929246 0.0902320850941316 0.0884328255794855 0.0907570504398115 0.107308417758043 0.0877885866818525 0.0855805406152777 0.0859444075144371 0.0895513324624697 0.0899705801711341 0.0855805406152777 0.0881646273936228 0.0895478818143695 0.0890515089250788 0.0899748707566835 1 0|1 /|+ 20878953 20879600 20879399.4 20877268 20879938 + gene protein_coding_gene FALSE TRUE AT1G55840.1|AT1G55840.2 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein similar to SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47730.1); similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABD28586.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.0777482360612693 0.905816597668087 0.384651979021667 1 -0.210615463972795 19.6864518263352 0.0777482360612693 0.046681288105177
AT2G03800_at 4.87946102814142 5.19253737369702 5.69031967757483 5.4753945360978 5.72946825085444 5.27936299419532 5.67893599993695 5.38710630784761 5.33632707345338 4.96014970376411 5.35750473623828 4.81114205210528 5.09843544310261 5.17031401501773 5.06874644845978 5.17399647874668 5.121829207568 5.05889570912096 5.22546391379284 0.179820694009212 0.185918702336768 0.184612933774835 0.190496898527124 0.176705150756068 0.182135561894275 0.176896992010563 0.181774134716354 0.179461737766852 0.181149879350271 0.185178853160923 0.176005582618724 0.177501186524497 0.182863556507061 0.178127749770093 0.177360527384858 0.176591700800806 0.179572038341282 0.179762055388178 2 2 + 1157349 1158497 1158092 1156710 1158931 + gene protein_coding_gene FALSE TRUE AT2G03800.1 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. Identical to Ethanol tolerance protein GEKO1 (GEK1) [Arabidopsis Thaliana] (GB:Q9ZPQ3;GB:Q76KI8); similar to Protein of unknown function DUF516 [Medicago truncatula] (GB:ABE92350.1); contains InterPro domain Protein of unknown function DUF516; (InterPro:IPR007508) 0.0963769841164934 0.905769357599215 0.384675897705159 1 -0.21065554443503 10.5548673918590 0.0963769841164934 0.113739040763146
AT3G45810_at 1.38164476864765 1.39323085028438 1.68941908677795 1.58221714414803 1.62016108376905 1.68294970131325 1.43837311572831 1.67408931742338 1.66619529328528 1.77603598926399 1.69077692353807 1.58945334902333 1.83208788498841 1.63534269221712 1.51102905047121 1.54564089571657 1.75461515907952 2.23960757540920 1.78208888402679 0.167863865317177 0.166806141202163 0.169211990480161 0.172269522595717 0.168178714378074 0.166806141202163 0.167468653062274 0.174354257429082 0.172471553458009 0.171544102709420 0.171623706964286 0.170807344970458 0.171977581247651 0.176392905342878 0.167874483891194 0.166806141202163 0.173888510242664 0.173527535275003 0.170527795896964 3 0|3 /|- 16844594 16845442 16845179.556 16843868 16848554 - gene protein_coding_gene FALSE TRUE AT3G45810.1 ferric reductase-like transmembrane component family protein similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F), NAD(P)H oxidase [Arabidopsis thaliana] (TAIR:AT1G64060.1); similar to ferric reductase-like transmembrane component family protein [Arabidopsis thaliana] (TAIR:AT5G60010.1); similar to putative respiratory burst oxidase [Oryza sativa (japonica cultivar-group)] (GB:BAD73392.1); similar to NOX1 [Striga asiatica] (GB:ABG35770.1); similar to respiratory burst oxidase protein A [Zea mays] (GB:ABH85405.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623) 0.0776156883806062 0.905377951764016 0.384874115042459 1 -0.210987561350798 3.29089025692689 0.0776156883806062 0.0461543737854617
AT3G54890_at 14.2119307669499 14.3124803110523 14.3196766233881 14.3159804321471 14.2553323491369 14.3196074214614 14.3680113825876 14.5366091880706 14.7374162806173 15.0289256104793 15.2254050491895 15.2088469045256 15.2850977998962 15.0118755991871 15.0057178114401 15.0409021304042 14.9225484860536 15.2667722412915 14.9770548201203 0.0600020827853984 0.0584698742645759 0.060898120225276 0.0598148527533368 0.0588059037026981 0.0600642339740732 0.0590589756953301 0.0578340740834295 0.071901981242851 0.0586374523583281 0.0613120283490772 0.0585662839092641 0.0582154107848037 0.0622750160695239 0.0618097343122022 0.0578340740834295 0.060600682444534 0.0584527862743133 0.059203505771704 3 3 - 20350717 20351750 20351050.818 20350482 20352081 - gene protein_coding_gene FALSE TRUE AT3G54890.1|AT3G54890.2|AT3G54890.3|AT3G54890.4 LHCA1; chlorophyll binding|LHCA1 Encodes a component of the light harvesting complex associated with photosystem I. similar to LHCB4.2 (LIGHT HARVESTING COMPLEX PSII) [Arabidopsis thaliana] (TAIR:AT3G08940.2); similar to photosystem I light-harvesting chlorophyll a/b-binding protein [Nicotiana tabacum] (GB:CAA45523.1); similar to chlorophyll a/b-binding protein (GB:AAA34140.1); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to chlorophyll a/b-binding protein (GB:AAA34140.1); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to chlorophyll a/b-binding protein (GB:AAA34140.1); similar to chlorophyll a/b-binding protein type I precursor (cab-6B) - tomato (GB:S06329); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCB4.3 (LIGHT HARVESTING COMPLEX PSII), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G40100.1); similar to photosystem I light-harvesting chlorophyll a/b-binding protein [Nicotiana tabacum] (GB:CAA45523.1); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) 0.0759107383555433 0.904984769539855 0.385073303809745 1 -0.211320962445305 29.3476342209263 0.0759107383555433 0.0357517606729324
AT2G40930_at 6.1555835307953 6.74616232195614 6.47169729876397 6.31560425857454 7.2109901257968 6.45914972664551 6.05795944894184 6.26934550303879 5.41817551235023 5.9327024882209 5.58158868731267 5.72792170715167 6.49816062131512 5.60126130055193 5.32540698093484 6.45805501537057 5.25947451704631 5.41050630933676 6.05278466932531 0.256728293212403 0.248397778370580 0.2531384080699 0.243019857546386 0.246042054447374 0.241658619697003 0.250928632204719 0.241658619697003 0.259877237522553 0.250510386707762 0.248018563740202 0.250936138197958 0.241658619697003 0.250551206993158 0.254683566570537 0.247151502084899 0.251145316594412 0.246560282806996 0.243411208552238 2 2|0 -|/ 17083826 17084602 17084238 17083406 17089511 - gene protein_coding_gene FALSE TRUE AT2G40930.1 UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific protease Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. Identical to Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (AtUBP5) (UBP5) [Arabidopsis Thaliana] (GB:O22207;GB:Q9SEX3); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G32850.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10570.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10590.1); similar to Os12g0621000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067298.1); similar to Os10g0160000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064204.1); similar to PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 [Canis familiaris] (GB:XP_860508.1); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1; (InterPro:IPR006615); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2; (InterPro:IPR010460) 0.119336826837100 0.904973019741371 0.385079257444675 1 -0.211330923861183 12.2278204179856 0.119336826837100 0.171585806305636
AT2G47140_at 1.30791993181992 1.26692834964784 1.69745180455222 1.48232425563199 0.808039762068972 0.962301002898752 0.972818017962683 0.972871705691904 1.40844237240349 0.893444676323366 1.01911856242894 1.52066848803830 0.794986857840092 1.12485462242415 0.928675529191045 1.07044328023791 1.15327335454451 0.683173469213782 1.59668873918849 0.20591318863506 0.207763704077075 0.203893737302225 0.207379999396407 0.207289188532039 0.202343197280396 0.20418802525269 0.211146191614484 0.210514327950204 0.214798308810300 0.209726642104199 0.202806441833385 0.206634388163935 0.208347913867052 0.212413884025057 0.207456575058843 0.208090796499262 0.212547233683541 0.203427539089714 2 2|0 -|/ 19358104 19358732 19358487.3 19357810 19359158 - gene protein_coding_gene FALSE TRUE AT2G47140.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G47130.1); similar to 3-beta hydroxysteroid dehydrogenase [Di (GB:AAV68714.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.0776156435706042 -0.904953438953884 0.385089179192589 1 -0.211347524103352 2.35204412034843 -0.0776156435706042 0.0463569178670901
AT1G60660_at 6.53410448451404 6.89108344136732 6.01365755185141 6.04299757651104 6.33961130138851 6.60460637002478 6.68914462383807 6.74550383704954 5.73150535692974 6.24594398663236 7.02665210548537 7.42311849201373 6.64357216986874 6.91279497034536 7.16188548468846 6.4822081939143 6.1112080926465 6.54718020257706 6.48512010308616 0.191658816032003 0.192080631007038 0.200596632177659 0.185631805795907 0.189103682677249 0.195995539218594 0.185350474363744 0.193941862242316 0.206650460499775 0.184110995134280 0.192261668745880 0.186731687117012 0.188307922135524 0.194787580703551 0.193419263863844 0.186903013633798 0.20281877698279 0.193019611642969 0.186321750956290 1 1 - 22346256 22346582 22346409.364 22346079 22346679 - gene protein_coding_gene FALSE TRUE AT1G60660.1 B5 #5 (cytochrome b5 family protein #5); heme binding / transition metal ion binding member of Cytochromes b5 similar to B5 #6 (cytochrome b5 family protein #6), heme binding / transition metal ion binding [Arabidopsis thaliana] (TAIR:AT1G26340.1); similar to hypothetical protein LOC405812 [Danio rerio] (GB:NP_998041.1); similar to Os08g0386300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061708.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.0848233758223571 0.904911293036402 0.385110535485292 1 -0.211383253625230 12.9539722880640 0.0848233758223571 0.0777193793531366
AT1G15260_at 9.16368040399689 9.53645269417036 8.86830548139211 9.06291023134356 9.84513870097815 9.66184279783375 10.4360163083877 10.5554019615906 9.48739491728647 9.98329464351858 10.1589383936313 10.4205769172969 10.5154735706662 10.1691311477556 9.95498459419814 10.2952294851660 9.8977314340563 10.0918032465748 9.9192219352403 0.113901844839697 0.108294768778286 0.117190082139032 0.110013801963454 0.110247028463783 0.122148682995272 0.110034034248964 0.112310252582660 0.122660837943061 0.105324004489859 0.105569397748236 0.105324004489859 0.108924727573653 0.111548493932415 0.111727543466964 0.107104428730818 0.119580347939103 0.108191863885337 0.109584804231494 1 1 + 5249888 5250305 5250130.273 5249755 5250568 + gene protein_coding_gene FALSE TRUE AT1G15260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16070.1) -0.085996052914896 -0.904488773363361 0.385324681500967 1 -0.211741369790711 19.6335289544699 -0.085996052914896 0.0820287341715505
AT2G23140_at 3.64520158724813 3.80771396049251 3.59207632998247 3.50533655972206 4.28105294060077 3.86740441658074 3.63588792880263 3.96045492157292 3.48051953166019 3.91224089342912 3.80116376207106 4.043185619474 3.29547775837917 3.31247347749921 3.18479371891780 3.46898576292444 3.80086953877285 3.0525329604333 3.78166396283396 0.235534730420649 0.235534730420649 0.243350177678044 0.235534730420649 0.239697678189801 0.236419980648599 0.236023498658811 0.251679674068649 0.239748681471211 0.250921218339637 0.235534730420649 0.238282630707849 0.244073639019347 0.278852363583239 0.240207041361423 0.235534730420649 0.239403063555305 0.236507520433207 0.238287172823525 2 2 - 9852960 9853405 9853205 9852933 9855842 - gene protein_coding_gene FALSE TRUE AT2G23140.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G54790.1); similar to Os08g0110500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060820.1); similar to arm repeat-containing protein [Nicotiana tabacum] (GB:AAO61490.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.0903599211531575 -0.904361978784158 0.385388961124522 1 -0.211848809712993 7.39676280768364 -0.0903599211531575 0.096412245212776
AT2G42580_at 6.07330074382959 6.1790349943157 4.78765582333818 5.42176307216897 6.89948425246589 6.50694722635525 6.33177902954742 6.04295708112122 8.00677877789835 6.71370752305412 9.22072484912567 8.34821793228028 7.882721351973 8.60066942566296 8.0722995347557 7.3727005517821 5.91143351695888 7.86354305594027 7.6127735090325 0.223071485569175 0.2185196306295 0.226414946471311 0.222118420844651 0.21822059147306 0.225569342095109 0.22345716842999 0.217353764308400 0.235252623056961 0.215683955530020 0.222224796126923 0.220717775313779 0.215957127385757 0.228112865196115 0.219551526633008 0.210425774436627 0.226285592353044 0.211303688606066 0.210425774436627 2 2|0 +|/ 17737687 17738486 17738035.8 17735793 17738796 + gene protein_coding_gene FALSE TRUE AT2G42580.1 TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); protein binding similar to TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1), binding [Arabidopsis thaliana] (TAIR:AT1G53300.1); similar to TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4), binding [Arabidopsis thaliana] (TAIR:AT3G58620.1); similar to Os01g0218200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042410.1); similar to 4D11_10 [Brassica rapa subsp. pekinensis] (GB:AAZ67524.1); similar to Os01g0616300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043576.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.105906736013393 0.903814856064277 0.385666415627804 1 -0.212312269744582 13.7070946348785 0.105906736013393 0.139604299880428
AT3G45490_at 2.30670715782727 2.01925306029416 2.27076481187091 2.47575286834528 2.26124581625645 2.20698184020687 2.10447117681146 2.29071030686882 2.88551355512636 2.69316721375858 2.43329544716985 2.40913734905379 2.48960896608456 2.45608363055650 2.45490653115467 2.05753909941846 2.52858182820706 2.75580318891960 2.63122228575591 0.188056857041440 0.186485761983512 0.188648151267085 0.191107298515969 0.186349491434472 0.194322268590208 0.188374079354076 0.190240070242625 0.186746443212670 0.188423408986217 0.186349491434472 0.191656891186756 0.187868964346934 0.188821764865260 0.197605440744485 0.193284418182442 0.195306632582246 0.193081726149903 0.191561124871279 3 3 - 16698077 16698754 16698426.727 16697947 16698878 - gene protein_coding_gene FALSE TRUE AT3G45490.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G25370.1); similar to Zinc finger, RING-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85921.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.0825569688784665 -0.903319907795635 0.385917531728857 1 -0.212731328251550 4.83436280811891 -0.0825569688784665 0.0697132309127657
AT3G21360_at 5.65270237949779 5.88274479298292 6.10441364834559 6.2305995237841 6.52740226151392 6.2782095846941 6.73196375838044 6.96919881872122 5.87939467434485 6.49350282241132 6.35236625378982 6.32559141263132 6.72235775965699 6.34900198533607 6.14987487913185 6.79962054034725 6.76486470769018 6.09126578841756 6.38485995953207 0.17108221649146 0.173616458601842 0.171579890869162 0.172299568065037 0.171525529213468 0.173968465033824 0.177579369918609 0.181298804677826 0.181769989139474 0.165723025382976 0.177931246132451 0.174166271804879 0.169924711936614 0.174040851899003 0.170304191615918 0.173195814299874 0.170094374698301 0.175686302771838 0.165116894214545 3 3 + 7523523 7524014 7523800.182 7522810 7524586 + gene protein_coding_gene FALSE TRUE AT3G21360.1 oxidoreductase Identical to Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9LIG0); similar to SyrP-like protein [Marinomonas sp. MED121] (GB:ZP_01078296.1); similar to Os01g0190000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042262.1); contains InterPro domain Taurine catabolism dioxygenase TauD/TfdA; (InterPro:IPR003819) 0.0838929571506086 0.903212690970844 0.385971944103286 1 -0.212822079962126 12.6456312133089 0.0838929571506086 0.074878865523034
AT1G70540_at 1.61772174118807 1.25203533067789 1.57615170521013 1.45830849377343 1.33144639027426 1.63254434950069 1.27526708367154 1.68757918243263 1.91258499500792 1.33468581159104 1.80245744835602 1.16817845751577 1.58968652377222 1.49986996863276 1.92118783809832 1.5464905159495 1.95428597674355 1.6710513810795 1.24000988679967 0.196572372815374 0.194048951217075 0.205288865321705 0.191016175413754 0.192047345427289 0.188376128102317 0.200989684844354 0.186726816721409 0.190394803221927 0.191701680770991 0.197602198680218 0.19147398136009 0.191804362745800 0.188821419643831 0.193700787994979 0.185447828053571 0.192103278575201 0.185447828053571 0.204030184555423 1 1 + 26597677 26598115 26597920.455 26597593 26598333 + gene protein_coding_gene FALSE TRUE AT1G70540.1 EDA24 (embryo sac development arrest 24); pectinesterase inhibitor similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G23350.1); similar to pectin methylesterase inhibitor [Brassica oleracea var. botrytis] (GB:AAZ20131.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0949263414163385 0.902594398052451 0.386285831245588 1 -0.213345244031498 3.04883740704175 0.0949263414163385 0.110575676895316
AT1G29270_at 1.21887763788524 1.60507087295457 1.74177208285363 1.70089251395836 1.16898651643170 1.35891241281933 1.13012861230584 1.60085163530939 1.62764283024152 1.30780206852424 0.772822830335133 1.13618143508872 1.24221274560908 1.12159679196776 1.16241385018582 1.07861964491625 1.37514700304235 0.885457923166382 1.23628240050607 0.185821745449465 0.177160014602861 0.177160014602861 0.177160014602861 0.182325751428508 0.184157313190641 0.178387673703465 0.187036986050447 0.182260713974003 0.181093905062771 0.178658532767721 0.191688962200265 0.177640356943075 0.179100563974782 0.183204543837581 0.183918743929368 0.180732518938494 0.180091843813194 0.180845442367732 1 1|0 +|/ 10230315 10230983 10230804.1 10230305 10231128 + gene protein_coding_gene FALSE TRUE AT1G29270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40435.1); similar to predicted protein [Gossypium hirsutum] (GB:AAT64012.1) -0.0949302732415054 -0.902544855106444 0.386310990285666 1 -0.213387151260385 2.68437768279620 -0.0949302732415054 0.110601883076807
AT3G24850_at 2.39989837010275 2.18582767544938 2.39688037103188 2.51635795285007 2.22597540810923 2.26796425320606 2.6065783596573 2.31699889510523 2.73189457796786 1.90868300649620 2.49856139563786 2.54853565203295 2.32718355080719 2.71368945824538 2.55537528704714 2.5777938195636 2.54237022214648 2.5310521051638 2.40383892762212 0.189333687851909 0.193305381370734 0.183973362782039 0.195213610023624 0.187123131314230 0.185687744127085 0.192362582997608 0.191096336642816 0.184686260804306 0.195644124576468 0.193860850287551 0.188101680992314 0.201033335421509 0.19398184446903 0.197958394480276 0.186717913195124 0.187091863274197 0.192229696612414 0.190304790912535 3 3 + 9071629 9072119 9071868.818 9071112 9072191 + gene protein_coding_gene FALSE TRUE AT3G24850.1 DNA binding similar to DNA binding [Arabidopsis thaliana] (TAIR:AT5G24050.1); similar to Protein of unknown function DUF313 [Medicago truncatula] (GB:ABE88646.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Protein of unknown function DUF313; (InterPro:IPR005508) 0.0815750100945675 0.902478390318261 0.386344744418902 1 -0.213443369212247 4.80703967253529 0.0815750100945675 0.0660607668705417
AT4G22920_at 7.59561228460264 8.0498763275368 9.19888643602119 8.99661071797858 9.43168504501057 8.75849692070352 9.11133505375146 8.47341087705605 7.67914187789541 8.1289210532395 6.97222891632012 6.4559663656707 7.77941976469134 7.77361684903071 5.7995843165397 8.12531820249327 7.9851197124051 7.56324991315983 7.73782527382766 0.232894242278739 0.217328303747687 0.230212444693158 0.233409078894172 0.230032569354217 0.226595970093994 0.231422013767542 0.221607740760165 0.244011967331036 0.219759663185464 0.220008855779624 0.221671069858029 0.227196129458961 0.224295865211657 0.237435616259076 0.217066095387305 0.232699342793672 0.227307889221062 0.219166879270275 4 4 - 12016797 12017615 12017101.455 12016536 12018503 - gene protein_coding_gene FALSE TRUE AT4G22920.1 Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11910.1); similar to senescence-inducible chloroplast stay-green protein 1 [Lycopersicon esculentum] (GB:AAY98500.1) 0.123522373788192 0.901896949586464 0.386640116713053 1 -0.213935019523255 16.2797104111791 0.123522373788192 0.182110808732957
AT2G48160_at 6.17642330406422 6.04032562205076 5.87702895245241 6.56992389580491 5.93201730697026 5.99216637441172 6.54455161239372 6.85004861430166 6.32649382336985 5.46286185830391 5.92052581917468 6.5530709634418 6.6256550090303 6.54896040463697 6.49030801961369 6.4552324703227 6.71692017654574 6.02061811419295 5.90997884031822 0.213259091997444 0.202445843472364 0.218139300813143 0.210888464600533 0.205573324378755 0.232047933335997 0.202445843472364 0.202593853047474 0.220154410828358 0.215147547784456 0.205226560559305 0.212677037222808 0.206932480190797 0.213254466006284 0.210152276788782 0.212287009972587 0.222494276719332 0.224262077881416 0.216110602985516 2 2 - 19697177 19697787 19697481.818 19696479 19703891 - gene protein_coding_gene FALSE TRUE AT2G48160.1 PWWP domain-containing protein similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G63070.1); similar to PWWP; Regulation of nuclear pre-mRNA protein [Medicago truncatula] (GB:ABE77466.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain PWWP; (InterPro:IPR000313) 0.103290021164882 0.901663972108073 0.386758513605059 1 -0.214131943290179 12.4059054833648 0.103290021164882 0.133552049444037
AT3G47730_at 7.4776145525592 7.3517474597136 7.49361005299788 7.526336787595 8.56798500444717 8.17622886921556 7.98859345743289 7.6779838429868 7.78018412064197 8.06208044545283 7.50297618294184 7.24890583948617 7.87656535488975 7.37453630136147 7.00439010995875 7.82137442867114 7.59308656511548 7.18644826604656 7.98941866828738 0.154967645161772 0.149345444927104 0.147363916847406 0.146580498263366 0.150636419311287 0.146466730734144 0.14594145821184 0.153301063157671 0.149353582593263 0.144426805044460 0.144426805044460 0.144426805044460 0.144565623211911 0.154485480604804 0.155625561402511 0.148929772528105 0.154005840517647 0.147949716246778 0.147067091819482 3 3|0 -|/ 17605340 17606003 17605619.5 17605045 17609881 - gene protein_coding_gene FALSE TRUE AT3G47730.1 ATATH1 (ABC2 homolog 1); ATPase, coupled to transmembrane movement of substances member of ATH subfamily Identical to ABC2 homolog 1 (ATH1) [Arabidopsis Thaliana] (GB:Q84K47;GB:Q9STU0); similar to ATATH15 (ABC2 homolog 15), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61690.1); similar to ATATH11 (ABC2 homolog 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61730.1); similar to Os08g0398000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061742.1); similar to PREDICTED: similar to ENSANGP00000009155 [Strongylocentrotus purpuratus] (GB:XP_791165.2); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0879018400055269 -0.901662049716688 0.386759490650816 1 -0.214133568007889 15.4799773996283 -0.0879018400055269 0.0893982314272731
AT2G40370_at 3.44039849343712 3.26501041735119 3.36380340958149 3.51022850537738 2.98389878323291 3.44348172455471 2.76743387765148 3.03380932326125 3.23068426641382 3.77779664770325 3.67334714070856 3.61617676470754 3.70924634258615 3.65505651681039 3.69790640647853 3.46287673132510 3.80719405599603 3.71433614135464 4.04118291646083 0.184906622230971 0.187662078226619 0.191721210025487 0.191641219509002 0.196117526938125 0.187700380962226 0.202101423543102 0.187889866798053 0.194842762923785 0.187583815713248 0.190391928348978 0.189881391868347 0.184862062969143 0.18914382569495 0.19401024838824 0.191916344478503 0.190425544568615 0.189156547351891 0.190521764561666 2 2|0 -|/ 16865281 16866000 16865754.5 16865244 16867684 - gene protein_coding_gene FALSE TRUE AT2G40370.1 LAC5 (laccase 5); copper ion binding / oxidoreductase putative laccase, a member of laccase family of genes (17 members in Arabidopsis). similar to LAC3 (laccase 3), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G30210.1); similar to LAC12 (laccase 12), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G05390.1); similar to LAC13 (laccase 13), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07130.1); similar to laccase [Populus trichocarpa] (GB:CAA74104.1); similar to Multicopper oxidase, type 1; TonB box, N-terminal [Medicago truncatula] (GB:ABE84876.1); similar to diphenol oxidase laccase [Glycine max] (GB:AAM54731.1); contains InterPro domain Multicopper oxidase, copper-binding site; (InterPro:IPR002355); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.0912431566989639 0.90135633875889 0.386914888602004 1 -0.214391903521029 6.90112746148352 0.0912431566989639 0.100068946345709
AT1G69050_at 0.484604469724794 0.6876973571947 0.336397612377208 0.693346238013937 0.631028959698442 0.507879964759428 0.691993430686739 0.701214061605277 0.702460612033196 0.895660915510108 0.628427911155464 0.514881672841269 1.13482558727321 1.25535118835031 0.204134734404896 0.658454931908022 0.726107643743349 0.744666535469638 0.805442864756231 0.212654700230521 0.214656984776529 0.221466010884500 0.211784626070783 0.209900342584728 0.213173164505239 0.210661556411777 0.208463579426109 0.217344436879801 0.208463579426109 0.208463579426109 0.210492922847883 0.220550724915499 0.216113882695835 0.221507194690335 0.209348354995108 0.223886744904998 0.224667064051893 0.214327516788519 1 1 + 25965660 25965884 25965766.182 25965587 25966011 + gene protein_coding_gene FALSE TRUE AT1G69050.1 unknown protein -0.0835229956069324 -0.901134806181144 0.387027524476970 1 -0.214579059070298 1.35904246496246 -0.0835229956069324 0.0742139709627876
AT3G28170_at 1.68320990971047 1.66563543141337 1.86342114121692 1.95174012515290 1.49794501844508 1.42815341899578 1.4003563003318 1.53850552208685 1.77562796193447 1.83826993313903 1.44363642195992 1.97592040567860 2.09903158551233 1.72193228045780 1.73855053760891 1.83412977062094 1.77469473902423 2.14370882181985 1.80088140680475 0.217434530528641 0.208451007352662 0.209781219723854 0.206694167719199 0.217304648174411 0.221191034113913 0.215058165396558 0.205958857802310 0.213315283483072 0.219091953104767 0.217982123231979 0.211004735635688 0.214581182353291 0.20982329662627 0.205958857802310 0.20897787680149 0.228055101485310 0.213970160804742 0.226097391599543 3 3|0 +|/ 10499600 10501323 10500624.125 10499598 10501597 + gene protein_coding_gene FALSE TRUE AT3G28170.1 unknown protein 0.0749561357214781 0.901119198012655 0.387035461145312 1 -0.214592243715997 3.45180936056652 0.0749561357214781 0.0309884710759220
AT1G79860_at 1.27689633894200 1.63611998952826 1.16484434011579 1.07061447678507 1.00326479885804 1.41958091492079 0.903396641342576 0.868008896147885 1.19441782264426 1.37414389298489 0.997275893004675 1.02155973774012 0.961696346067003 0.896716283307459 0.94715631724356 0.85717140451954 1.57978836447766 1.17569061377469 1.11653157119043 0.190669452446105 0.197236280147961 0.194241843273949 0.196823221431721 0.198887782179805 0.191090349923544 0.190669452446105 0.196155999872533 0.204963392234007 0.20323383310147 0.201687381277293 0.190669452446105 0.194339608072666 0.190669452446105 0.193062916727035 0.190772870587746 0.197651899454052 0.197537070900703 0.191727557840181 1 1 - 30047073 30047640 30047309.273 30046985 30049068 - gene protein_coding_gene FALSE TRUE AT1G79860.1 ATROPGEF12/MEE64/ROPGEF12 (KINASE PARTNER PROTEIN-LIKE, maternal effect embryo arrest 64); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF8/ROPGEF8 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT3G24620.1); similar to pollen-specific kinase partner protein [Lycopersicon esculentum] (GB:AAW57535.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.09013094637164 -0.901022930141445 0.387084415338678 1 -0.214673559520217 2.3093389490584 -0.09013094637164 0.0967393060654964
AT3G49930_at 4.15488379585305 4.51015398965185 3.18401772064355 3.32843232011424 3.07755751497923 3.60293770488029 2.54621767837748 2.86854245670859 2.65351144647947 2.72012932604182 3.47933699910092 3.55307459942306 3.22786634879739 3.79992311793797 2.73815370703134 2.69119619756345 2.98105168520384 3.35339321335115 3.04408643546944 0.250626480844384 0.246022254754725 0.252369609212262 0.253125994154035 0.250173225201905 0.247329142642968 0.245946431697749 0.246151389881610 0.241455704211687 0.245443347572064 0.241322517084722 0.241486172945071 0.241322517084722 0.242168017489092 0.250035909285802 0.243824856202932 0.245023780469649 0.241842320052837 0.244290310758346 3 3 + 18521294 18521839 18521560.727 18521231 18521948 + gene protein_coding_gene FALSE TRUE AT3G49930.1 zinc finger (C2H2 type) family protein similar to AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G67450.1); similar to zinc-finger protein BcZFP1 [Brassica rapa] (GB:AAB53261.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.100188624613742 0.900891100687354 0.387151460328683 1 -0.214784901592207 6.42604717409172 0.100188624613742 0.125627446895750
AT4G30280_at 1.10802020513918 1.74454570589208 1.30179490829674 1.54511791684524 1.48577958777642 1.34255587203011 1.23936867215846 1.12577308194809 1.62499048087869 1.88996093661800 2.8314032739473 1.39069328580195 1.29640699122482 2.29783105514367 1.81513781788240 1.26678095695651 2.07808015376043 1.30096137635815 1.58892879878745 0.234030580171685 0.230475988126676 0.230000302936744 0.229363502947516 0.234571036944891 0.235269327179442 0.234828436341683 0.232234398979203 0.230248495958815 0.236588866671885 0.236379436074978 0.228753997746295 0.232468878022387 0.233521190744599 0.237378435473557 0.231068069563818 0.233261169331777 0.237449845105141 0.229413837995578 4 4 - 14825965 14826569 14826234.727 14825814 14827053 - gene protein_coding_gene FALSE TRUE AT4G30280.1 ATXTH18/XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18); hydrolase, acting on glycosyl bonds putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 18 precursor (EC 2.4.1.207) (At-XTH18) (XTH-18) (XTH18) [Arabidopsis Thaliana] (GB:Q9M0D2); similar to ATXTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT1G65310.1); similar to putative xyloglucan endotransglycosylase [Cucumis sativus] (GB:CAD87535.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.0988768067045156 0.900881270578368 0.387156459987509 1 -0.214793203466282 3.10459712841702 0.0988768067045156 0.12209712226968
AT2G29670_at 11.6498643801837 11.8207090368284 11.7352576583802 11.7040073646372 12.3894734431756 12.2849232131563 11.9248336111827 11.8836263808501 11.9362973745618 11.9441353546115 11.6676788585374 11.6567714121432 11.9224543164282 12.039019756456 11.3128366259566 12.0808786754451 12.0777824723646 11.8835655563895 11.7827082260356 0.064728343488619 0.0607276852329359 0.0617149316334392 0.0634595027679736 0.0646296860471877 0.062834531476372 0.0643740576596488 0.0608419783654831 0.0632705742932108 0.0642284966040523 0.0609591973616041 0.0613581375042213 0.0639504529410256 0.0622267014127891 0.0675233397294034 0.061677489173333 0.0648935470821587 0.064178634219353 0.0643941512010851 2 2 - 12689406 12690751 12690082.273 12689220 12692164 - gene protein_coding_gene FALSE TRUE AT2G29670.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G07280.2); similar to Os05g0447700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055695.1); similar to Os01g0855200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044840.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:AAM93690.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0755334375274392 0.900407186598144 0.387397635659013 1 -0.215193492667118 23.7830054415249 0.0755334375274392 0.035799009817624
ATCG00220_at 12.2662589286003 12.5705107563783 12.620494126467 12.5995242379073 12.0430970646521 12.3320144688549 12.0574395342402 12.5832360443907 13.1103589759983 13.2412399597479 13.6496155659851 13.533005332314 13.3500967636172 13.1140198329142 13.1679937207865 13.4013462810126 13.2354511554273 13.4075362165808 13.2282536940864 0.12540998319235 0.124805506265502 0.129541768680839 0.12503447985048 0.121244905337911 0.126356841846164 0.129270392372591 0.126391115716038 0.125419723919329 0.121886600743204 0.127902403060781 0.124687881251461 0.121387274860886 0.128856030536555 0.122036958324549 0.124216011309030 0.133438924955919 0.131805972695618 0.125944655249425 C C - 28731 28779 28760.182 28707 28811 - gene protein_coding_gene FALSE TRUE ATCG00220.1 PSII low MW protein Identical to Photosystem II reaction center protein M (PSII-M) (psbM) [Arabidopsis Thaliana] (GB:P62109;GB:P12169); similar to photosystem II M protein; psbM [Oryza sativa (japonica cultivar-group)] (GB:AAS46110.1); contains InterPro domain Photosystem II protein PsbM; (InterPro:IPR007826) 0.0967600286017336 0.900234967413187 0.387485272793028 1 -0.215338860247826 25.6594055544483 0.0967600286017336 0.116467736232364
AT1G44160_at 0.828066046133457 1.09803561623195 1.38184816924057 1.08794090670355 0.985083895697117 1.11649130050944 0.906847811010883 1.08053458331858 1.58279629277375 1.16764174975413 1.24267037605201 0.972809698265412 1.64049272334913 1.16328653783211 1.18685943151792 1.17738081901034 1.34908639583392 1.57016546408081 1.09864483405198 0.200519120773785 0.205116396343298 0.203000947838307 0.203033090101011 0.208819668194578 0.204730458674681 0.203124287057334 0.199483511906136 0.209692941009315 0.199808102240431 0.210236516883162 0.202161535457156 0.208561905766895 0.212200642495283 0.199483511906136 0.199880989714332 0.203875475656758 0.207904461834119 0.200652982125526 1 1 + 16798051 16798690 16798413.455 16797269 16798890 + gene protein_coding_gene FALSE TRUE AT1G44160.1 DNAJ chaperone C-terminal domain-containing protein similar to DNAJ chaperone C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G11040.1); similar to pollen-specific DnaJ-like protein [Lilium lon (GB:AAR12906.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095) 0.0846431795400188 0.90017001136684 0.387518330546513 1 -0.215393682510226 2.34604181924036 0.0846431795400188 0.0786780517833633
AT3G25060_at 1.53973038361096 0.96436036904086 1.16681676263005 1.09614516474571 1.06266910860184 1.05019961723239 0.677262194786509 1.17194647182612 1.05403132769301 0.866264241006739 1.40014925954788 1.17748546694195 0.764267663734788 1.49344141639077 1.15323438975800 0.959224794216359 0.944082783770824 0.99768899183465 0.815511562012002 0.194161240403494 0.192080529054437 0.192129524623430 0.196430810227014 0.196653773725949 0.196500487522288 0.192391747278035 0.196598442893572 0.192636846667627 0.195660892554943 0.195009100552437 0.190701796628429 0.194424416902203 0.196013168661438 0.202248611871313 0.192637755249610 0.201638286474716 0.196168439250648 0.195662130191756 3 3 + 9129753 9130235 9130028.091 9128523 9130328 + gene protein_coding_gene FALSE TRUE AT3G25060.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G12770.1); similar to hypothetical protein [Oryza sativa] (GB:AAG46111.1); similar to Os10g0540100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065185.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.102446972011768 0.899854951103407 0.387678700449971 1 -0.215659542518753 2.10270753706513 0.102446972011768 0.131898213119491
AT1G48790_at 8.82731005617574 8.97496875270396 8.8575514799641 8.86439714116235 9.45246221867966 9.24945881145795 9.0697409493176 8.78662421639888 9.04052159775038 8.7881867039909 8.93412350551565 8.66974129436837 8.88613427209405 9.14987331868833 8.42920450265066 8.8301422788807 8.64349010262648 9.07016780230382 8.73785105549502 0.124949808350512 0.118678399216685 0.124447797949143 0.125599446972972 0.118514998053699 0.118791526776920 0.123516127074426 0.121353523987704 0.136784574872184 0.117810946007624 0.117279719720107 0.122035265791718 0.121914027838435 0.125131085119672 0.121095312335357 0.117279719720107 0.131623788947110 0.123481923061207 0.117690250596594 1 1|0 -|/ 18047690 18048952 18048247.333 18047378 18051325 - gene protein_coding_gene FALSE TRUE AT1G48790.1 mov34 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G16144.1); similar to Os01g0499300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043127.1); similar to ALM beta-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72364.1); similar to Os01g0338200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042943.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555) 0.0811981340312706 0.899828889422687 0.387691968264779 1 -0.215681530825106 17.8513789134257 0.0811981340312706 0.0654904841153036
AT2G46780_at 1.01347779378577 1.53590633801798 1.19553909946723 1.6882771167786 1.37299576323318 1.65915179191636 1.94727078176710 2.31734386994317 2.79862757587002 2.36481733634489 3.00102169253058 2.70425468275073 2.5567176339253 2.50388928086647 2.93011485638112 2.50515756702919 2.07848786412217 3.12942840014910 2.8446606678021 0.210401037922600 0.208818806628230 0.219527076237196 0.210177212769138 0.207412385870702 0.217894775331866 0.212255483582458 0.215518631018151 0.224936779502499 0.221109904167500 0.220128623666155 0.207412385870702 0.211493448320443 0.222162291235175 0.214012416881029 0.207412385870702 0.214487558739589 0.213394413052466 0.212071246452966 2 0|2 /|+ 19237190 19237796 19237636.857 19236363 19238574 + gene protein_coding_gene FALSE TRUE AT2G46780.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.108871641241332 -0.899397888313438 0.387911433695527 1 -0.216045088982499 4.26399658130951 -0.108871641241332 0.148319225336341
AT1G24260_at 1.31101558699899 0.58769404770409 1.03960363059277 0.994594744337428 0.719508470171718 1.48830308877686 1.25783078279805 1.13907736478196 1.62007820395575 1.6624546831813 1.09153828059029 1.3011976846902 1.21542019382263 0.953487407158172 1.42332105810798 1.52342999836636 1.26356601513019 1.73803914228232 1.36238318014590 0.227521256653263 0.230006040565775 0.232803593773844 0.233750522534289 0.226930862941266 0.228904133775406 0.232029953422615 0.236243840881549 0.2272561186961 0.234851254747104 0.231267301313302 0.226930862941266 0.233215931340045 0.231445932143251 0.236523964911322 0.229216467967598 0.228737726925801 0.228279204003093 0.231187884719644 1 0|1 /|- 8593783 8594811 8594182.222 8593631 8596087 - gene protein_coding_gene FALSE TRUE AT1G24260.1|AT1G24260.2 SEP3 (SEPALLATA3); transcription factor Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals. Identical to Developmental protein SEPALLATA3 (Agamous-like MADS-box protein AGL9) (SEP3) [Arabidopsis Thaliana] (GB:O22456;GB:Q8GWQ4;GB:Q8L9R5); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to Agamous-like MADS box protein AGL9 homolog (MADS D) (GB:O04067); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.123978672671772 -0.899188614867053 0.388018026762432 1 -0.216221561917373 2.49823112865998 -0.123978672671772 0.183989533307174
AT4G02660_at 2.21015976990379 1.83801978794670 2.21983763679097 2.06045486301134 1.72321792537375 2.11206788620286 2.26658565520502 2.22822553003561 2.09887094669115 1.83228756333960 2.54486515028245 2.08889721967701 2.25801307031316 2.62948634504062 2.39951271178973 1.93744467936532 2.51395334461238 2.68181727358374 2.35263670515558 0.223243930881674 0.211472765810016 0.216220625230108 0.217844035813410 0.210321144490424 0.214707575589884 0.208817612891369 0.213020649596186 0.218763030250510 0.231791493076344 0.207309796725094 0.207878720214488 0.20581610723782 0.205512161990803 0.210323012861384 0.215284270306834 0.206894298987502 0.205512161990803 0.207572787609196 4 4 - 1160211 1160669 1160466.909 1159667 1174321 - gene protein_coding_gene FALSE TRUE AT4G02660.1 WD-40 repeat family protein / beige-related similar to WD-40 repeat family protein / beige-related [Arabidopsis thaliana] (TAIR:AT1G03060.1); similar to WD-40 repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98825.1); similar to putative beige protein [Oryza sativa (japonica cultivar-group)] (GB:AAP12994.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Beige/BEACH; (InterPro:IPR000409); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0901486056714457 0.899186264403511 0.388019224082746 1 -0.216223543782135 4.32049469650633 0.0901486056714457 0.0973679460815275
AT3G57550_at 7.65575504395056 7.19052665067351 7.87362021933522 7.59721933126171 7.17670595336048 6.55215152172256 6.87153226933398 6.75890269545647 7.86208431958664 6.43710335382826 6.90409449533026 6.97993339397037 6.10589217469631 6.76689424030325 6.94032503439698 6.37523147450026 6.06792222789606 6.49816340691649 6.62558221921709 0.188758562190533 0.188478419926363 0.191680461951832 0.200246480876183 0.185457730640707 0.192745004106275 0.182722026605679 0.192471853019840 0.181744730393395 0.185423311808611 0.184319542860120 0.187420813806560 0.19700833033249 0.184987238463659 0.191368935394464 0.184477415246111 0.186851847515956 0.190203220850805 0.191300361166696 3 3|0 +|/ 21319193 21320136 21319624.6 21317700 21320441 + gene protein_coding_gene FALSE TRUE AT3G57550.1|AT3G57550.2 AGK2 (GUANYLATE KINASE-ENCODING GENE 1) guanylate kinase similar to GK-1 (GUANYLATE KINASE 1), guanylate kinase [Arabidopsis thaliana] (TAIR:AT2G41880.1); similar to guanylate kinase [Lilium lon (GB:AAG12252.1); contains InterPro domain Guanylate kinase/L-type calcium channel region; (InterPro:IPR008145); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Guanylate kinase; (InterPro:IPR008144) -0.107185574988192 -0.898724882492593 0.388254300689889 1 -0.216612486589699 13.9869168874094 -0.107185574988192 0.144330968484383
AT2G44850_at 4.20846874015826 4.25505608921639 3.58516090497649 4.09366222652341 4.86802957094227 4.43820328875073 4.46257793246548 4.11915113949392 4.18871011264259 4.29941735903545 4.10729699194239 4.0278577841394 4.33070037523852 3.85624733986954 4.15053853002012 4.57011179891386 4.33203425951659 3.90674545780659 4.55638148478188 0.225435072558568 0.218934163645069 0.226553870395331 0.224500166707574 0.227237753051434 0.224976559418192 0.232685275136224 0.223111501121886 0.230054917048141 0.219143479396551 0.226173412028999 0.218934163645069 0.219333812493584 0.236184336955325 0.224526199475467 0.222724735832282 0.226121014703735 0.226716520459108 0.218934163645069 2 2 + 18507310 18507682 18507538.909 18505747 18507898 + gene protein_coding_gene FALSE TRUE AT2G44850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45380.1); similar to putative protein [Oryza sativa] (GB:CAC39059.1); contains domain Cutinase-like (SSF52259) -0.101513781253858 -0.89835072622856 0.388445008121377 1 -0.216927773824185 8.50796934623296 -0.101513781253858 0.129899004801130
AT3G53440_at 1.58048035201780 2.00081554947254 1.71976597682698 1.79981059489486 2.05162113316983 2.11048934368734 2.01514541215243 1.59787484017021 1.50069351624905 2.14700721354388 2.16574188300337 2.17427690065801 1.95295494725414 1.77554228613567 1.93223479060824 2.21374586761377 1.82379691450101 1.80562715476995 2.10607820192658 0.206569635656892 0.20604460600215 0.206504328680115 0.205325354110778 0.211432627596938 0.209749089136086 0.211456870281343 0.224701015270805 0.212845164415905 0.209565309001798 0.217592687689105 0.204296834223472 0.204432059231195 0.210221021263249 0.204906940803892 0.208158815168241 0.213555344910173 0.229670315930791 0.205202458222855 3 3 + 19822871 19823396 19823115 19821766 19823648 + gene protein_coding_gene FALSE TRUE AT3G53440.1|AT3G53440.2 DNA binding similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABD33417.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0922032530931756 0.898241296002598 0.388500797020478 1 -0.217019965386211 3.80870860211959 0.0922032530931756 0.103929233721920
AT1G03540_at 2.69085265556358 2.49525498369045 2.76689814886602 2.90724361274071 2.09132766617100 2.57675833730470 2.45261798209486 2.49074479173174 2.12782148907864 2.09872134061672 2.23580753939461 2.33983034761662 2.14673936671474 1.95066150895264 2.51642319958314 2.31276545883078 2.65085738115556 2.53546185201631 2.40783895144788 0.182319609754462 0.176275763370995 0.185958375194197 0.182082447346348 0.188192223541143 0.181351836560910 0.182748526714063 0.187579135614887 0.187411377183245 0.177936670800075 0.181028961597634 0.177337790846046 0.183771575710266 0.179902175840856 0.181789718516627 0.184997769850822 0.185538804270251 0.182534244709502 0.180212235470803 1 1 + 885012 885515 885233.545 883782 885611 + gene protein_coding_gene FALSE TRUE AT1G03540.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G13600.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD35499.1); similar to Os06g0611200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058058.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0888985380345413 0.897353746948528 0.388953486601096 1 -0.217767344592365 4.83272673501911 0.0888985380345413 0.094001007287267
AT3G16970_at 2.31692094960168 2.50798015168269 2.67941437297411 2.54256066556355 2.26370115073590 2.76642401752286 2.57895772490495 2.07847075281592 2.5610418942192 2.57548728044880 2.86531387291533 2.41399679624673 2.6831461360547 2.02919962544432 2.40395472861508 2.52714543769485 2.83880343715801 2.40967069552093 2.39818134899997 0.193948137294547 0.197192951125468 0.198839689231847 0.193109080871874 0.195601247033338 0.195672120080681 0.199321609204728 0.206511098026703 0.199496005684710 0.192180078123593 0.196004694119637 0.192180078123593 0.192180078123593 0.197902623739675 0.198204019106838 0.200069754438709 0.200350129111447 0.198581312289269 0.195583105241097 3 3 - 5793678 5794063 5793886.273 5793674 5794096 - gene protein_coding_gene FALSE TRUE AT3G16970.1 self-incompatibility protein-related similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G17080.1); similar to Plant self-incompatibility S1 [Medicago truncatula] (GB:ABE83730.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) 0.101138161799023 0.896956861918883 0.389156034309755 1 -0.218101346347304 4.98329073110632 0.101138161799023 0.129322911499480
AT4G11930_at 2.07146413596984 1.75098273153291 2.18069935324167 1.97944099716461 1.82384482039201 1.59527390468018 2.23093132902543 1.81069156926516 2.19988747818923 2.13335675466963 1.91101219145191 1.92100099025321 1.89070870996644 1.88940214499210 1.98101915904873 2.05430857563709 2.36041890668125 1.74252158594889 1.91516708113851 0.222780784368800 0.214879697969615 0.217865055790696 0.214051137358365 0.215409394625045 0.212075503961737 0.217339269157905 0.214423004463016 0.223026301020223 0.221137385466538 0.215468380872440 0.212138721152838 0.221884311324059 0.210986634959433 0.218345265208026 0.212689762831475 0.211489715511869 0.217517968045164 0.213197887389778 4 4 + 7165144 7165558 7165329.364 7164898 7165716 + gene protein_coding_gene FALSE TRUE AT4G11930.1 heat shock protein binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11940.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0926037054568598 -0.896821733517204 0.389225012948227 1 -0.218215036013868 3.95621750732393 -0.0926037054568598 0.105557582284361
AT4G39840_at 2.5954834958053 3.05292328902679 1.67001961687806 2.07146314915277 3.12981057960837 2.81130598081874 4.60560965459327 3.81640457466165 3.48445216628650 3.23445281884511 5.27909087822228 6.62249640662488 4.11008427385298 4.80762215984764 5.58745373309545 4.3146252161407 3.07926241119546 4.09431859454698 3.46672499969939 0.243590076165892 0.247640354511774 0.257696472024584 0.251502290277617 0.243590076165892 0.252041394480144 0.258814337010301 0.258430194472181 0.263038893347853 0.248714484494741 0.254279040218238 0.265811450991314 0.256213814574844 0.253064692737015 0.258291679201011 0.245876566324361 0.247400643982556 0.245927885611849 0.247092428567108 4 4 + 18486065 18486462 18486271.636 18484895 18486808 + gene protein_coding_gene FALSE TRUE AT4G39840.1 similar to hypothetical protein MtrDRAFT_AC125389g23v2 [Medicago truncatula] (GB:ABE94089.1) 0.122351896169931 0.896699654662948 0.389287337526837 1 -0.218317733959606 7.03516714463535 0.122351896169931 0.181063308910998
AT3G08950_at 5.00271893136481 4.70626711780801 5.52499069073983 4.88720885054931 4.75453268993948 4.60471219524457 5.19170806559641 4.91022749656696 3.38310489910844 4.01465469169324 3.50984475387343 3.76868678187855 3.6778176285824 3.66913201428526 3.51906037127513 3.48584071727252 4.2020179629206 3.46376630545889 4.17476476365953 0.229385782817885 0.229380515532594 0.225208743318855 0.231630846447800 0.221493342022537 0.224569868989415 0.229651561683185 0.230865603979593 0.226845067496796 0.224432018402337 0.228912514333952 0.220374886453228 0.223549084417848 0.227283269547232 0.228121573839792 0.221055563703110 0.233555565447841 0.223503187248591 0.220681845743224 3 3 + 2727877 2729241 2728633.909 2727220 2729606 + gene protein_coding_gene FALSE TRUE AT3G08950.1 electron transport SCO1/SenC family protein similar to electron transport SCO1/SenC family protein [Arabidopsis thaliana] (TAIR:AT4G39740.1); similar to Os02g0159700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045964.1); similar to PREDICTED: similar to SCO cytochrome oxidase deficient homolog 1 (yeast) [Strongylocentrotus purpuratus] (GB:XP_001199811.1); similar to PREDICTED: similar to SCO cytochrome oxidase deficient homolog 1 (yeast) [Strongylocentrotus purpuratus] (GB:XP_797763.2); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Electron transport protein SCO1/SenC; (InterPro:IPR003782); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.102678298713067 -0.896040425528912 0.389624011823971 1 -0.218872099871988 8.70756022227472 -0.102678298713067 0.133636621681547
AT1G35515_at 2.10668494116864 2.30994783292687 2.11106431947194 1.80903270908613 1.99890767997250 2.03681185885922 1.66133386846172 1.66214168024963 2.24560613533230 2.31350343019203 1.98124823232839 1.92467189843984 1.77930076313147 2.21593883796416 1.94189393830778 2.15722597562672 2.44776553067698 2.33396018718272 2.37773866271014 0.205047215070633 0.207277197186121 0.205047215070633 0.212290208922159 0.208489902219203 0.215865201805224 0.205810536073777 0.210929152924643 0.208920486046891 0.213837491001459 0.207725810729647 0.207860496541367 0.210853610545666 0.205309021760507 0.210223294981589 0.205946022958153 0.211213187110493 0.21884704913693 0.207038219137200 1 0|1 /|+ 13079949 13080219 13080093.6 13077904 13080243 + gene protein_coding_gene FALSE TRUE AT1G35515.1 HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding Encodes a nuclear localized R2R3-type MYB transcription factor that is involved in responses to abiotic stress including cold acclimation,osmotic and salt stress.Mutants are sensitive to salt, freezing and osmotic stress. similar to ATMYB6 (myb domain protein 6, myb domain protein 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G09460.1); similar to myb-like transcription factor 1 [Gossypium hirsutum] (GB:AAN28270.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.080302505570916 -0.895514337760308 0.389892834749555 1 -0.219314253939929 4.16700731787562 -0.080302505570916 0.0633428003343933
AT4G34400_at 1.44378810824443 1.09978792078661 1.60689988025267 1.23220641431967 0.845631985232923 1.26945328954836 1.1564502384698 1.30284217852338 1.57928473113686 1.71759148874772 1.45347514502854 1.49184731142927 1.72540038712615 1.78334176869555 1.65548424959776 1.51227840361765 1.59714930877144 1.63263838632816 0.906685909955692 0.195563781921773 0.197846354407504 0.198202427753707 0.198941087580809 0.198200075319185 0.197383628161422 0.205437658407819 0.195563781921773 0.195563781921773 0.200969431317844 0.195726684127578 0.201012947669714 0.20167501114572 0.195563781921773 0.201054429781540 0.195563781921773 0.198553395122678 0.201734496975484 0.201636696887212 4 4|0 +|/ 16446750 16447569 16447226 16445212 16447777 + gene protein_coding_gene FALSE TRUE AT4G34400.1 DNA binding / transcription factor similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT3G06160.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE81219.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.0965476371466218 0.895344671033656 0.389979559364566 1 -0.219456804315688 2.7484521252661 0.0965476371466218 0.117344132385242
AT1G13760_at 0.507448709048098 0.66426218015428 0.90633417419258 1.02577462928443 0.658711406069687 0.714114007290807 0.71224270468266 0.897295070702614 0.419472791279913 0.653423082439302 0.762335598710972 0.559474203703422 0.583529266300893 0.713401380025464 0.459458881353964 0.263298798663008 0.516090366686965 0.709582705675103 0.570460555568157 0.205235911161363 0.199978418817591 0.203914830432655 0.208403097071394 0.199978418817591 0.199978418817591 0.2007925222063 0.205103358492378 0.207845111555244 0.202005067344256 0.203578677311478 0.201469440314256 0.204210083538671 0.204664661865837 0.204143891551913 0.199978418817591 0.200493368491688 0.205803542392793 0.202964339236441 1 1 - 4720178 4720397 4720291.455 4720178 4720507 - gene protein_coding_gene FALSE TRUE AT1G13760.1 similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G13750.1); similar to diphosphonucleotide phosphatase 1 [Lupinus luteus] (GB:CAD12836.1); contains domain Metallo-dependent phosphatases (SSF56300); contains domain ACID PHOSPHATASE RELATED (PTHR22953); contains domain no description (G3D.3.60.21.10) 0.0770161558866567 0.895012657979923 0.390149305559606 1 -0.219735688030521 1.32011379846269 0.0770161558866567 0.0477613044096664
AT4G23860_at 4.79685242818618 4.7592432667972 4.91037882738965 4.64420051371652 4.63170445416136 4.87343091233141 4.67563468161384 4.23784104937484 4.59119550355601 3.8360506597941 3.58310393225219 4.08054913463961 4.34471689143677 3.93007490761474 4.31415769704358 4.41121346506511 4.58566582202911 4.09040372107152 3.97777743682423 0.182359585103665 0.173966470144432 0.173880208405299 0.172243031792138 0.179630385340715 0.177656680040166 0.185509886848767 0.179716410859179 0.184757384327115 0.178979082286274 0.180104773058345 0.172469500941770 0.178044205992676 0.176080104720596 0.172100702836795 0.176568796327801 0.183487611165295 0.184292573185016 0.176765669968898 4 4 + 12410661 12411134 12410854.4 12409017 12411575 + gene protein_coding_gene FALSE TRUE AT4G23860.1|AT4G23860.2|AT4G23860.3 PHD finger protein-related|protein binding / ubiquitin-protein ligase/ zinc ion binding similar to Zinc finger, PHD-type; Zinc finger, N-recognin [Medicago truncatula] (GB:ABE94048.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, N-recognin; (InterPro:IPR003126) 0.0900068250380113 0.894937111815406 0.390187936730532 1 -0.21979913284803 8.8424075482558 0.0900068250380113 0.098254867882418
AT2G14590_at 1.03020577642955 0.995002175584576 1.15306802456702 0.619141890506296 1.09047288248273 1.20099946072628 0.985283362326608 0.887023593689634 1.82530208914491 1.39378770452553 1.26117756472715 1.18388253112326 1.80463620374029 1.24254822881917 1.07435156844985 1.11576430734839 1.58481184650794 0.483620502191497 1.09787933776389 0.228017997119193 0.21525888506704 0.21751006884049 0.21525888506704 0.219377918765092 0.221776857570781 0.219285160493003 0.222372103050838 0.218041118520018 0.227905384234128 0.216216805105641 0.223113529823053 0.232874086846828 0.21525888506704 0.225155615214347 0.216747274355032 0.224798457094475 0.222373941810578 0.21525888506704 2 2 + 6236440 6236828 6236682.636 6235919 6236890 + gene protein_coding_gene FALSE TRUE AT2G14590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27606.1) -0.0892993894008419 -0.8948315585468 0.390241916736897 1 -0.219887770443833 2.32406904808486 -0.0892993894008419 0.0960706722685101
AT2G01680_at 7.8689527815323 8.05456034243845 8.08554236237063 8.12291212681967 8.36550815580848 7.85627505721723 8.38246233062837 8.38599575819684 7.12077785215386 7.65044958312809 7.21290775879664 7.29706152268768 7.69629189175511 7.66994293403798 6.44678879847163 7.61229115471046 7.51644407536754 7.37430617992068 7.62410082294906 0.194080618166925 0.204492500727090 0.205542489169001 0.206018991051245 0.197807906742489 0.202748401037777 0.205146959383672 0.199541185164209 0.236594461815078 0.202609772668481 0.201624217545320 0.199269696325397 0.201585088924191 0.217116467794235 0.204319829368270 0.194088450391176 0.207577991623017 0.199358377430076 0.196601452947734 2 2 + 307871 308360 308085.636 306384 308658 + gene protein_coding_gene FALSE TRUE AT2G01680.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G07710.1); similar to Os02g0735700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048047.1); similar to Ankyrin [Medicago truncatula] (GB:ABE93792.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0886442537934311 -0.894723935490439 0.390296960573283 1 -0.219978136954225 15.5494579688159 -0.0886442537934311 0.094021014486332
AT4G24250_at 1.41250438158008 1.31619575452096 1.12484421785246 1.57216797902104 1.55933262682790 1.62903524470480 1.63345330667160 1.49681950908848 1.74815201466158 1.87576964414935 1.64834689298096 2.33860838894616 1.78683350744248 1.85727981985639 1.74093797113567 1.99523428097514 1.62283078058767 2.1400342114258 1.55681808906224 0.198362065286995 0.198088297261155 0.202688671027449 0.201715369354472 0.212713617462916 0.201487457939032 0.205968991337701 0.198012952104138 0.206250113436339 0.203193173435998 0.203767270642067 0.202940529631087 0.200239347616831 0.200354011620705 0.207327948432577 0.203464095430201 0.201207258763392 0.2164558478926 0.204305522277443 4 4 - 12575042 12575883 12575485.909 12574822 12577593 - gene protein_coding_gene FALSE TRUE AT4G24250.1 MLO13 (MILDEW RESISTANCE LOCUS O 13); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO13 belongs to the clade II, with ATMLO1 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and also in placenta of developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 13 (AtMlo13) (AtMlo20) (MLO13) [Arabidopsis Thaliana] (GB:Q94KB2;GB:Q9STW9); similar to ATMLO1/MLO1 (MILDEW RESISTANCE LOCUS O 1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G02600.2); similar to Os01g0888600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045040.1); similar to Mlo-related protein [Medicago truncatula] (GB:ABD32919.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.0854758807569969 0.894550877587571 0.390385482380858 1 -0.220123426900633 3.27713236801333 0.0854758807569969 0.0835158918280482
AT4G33970_at 1.29077922787268 1.32625010515419 1.31649595749699 1.53540491951134 1.08325301454899 1.54206450883013 0.627059528861608 1.37383059760610 1.45346441249275 1.60649536900811 1.50573548282805 1.20958265215919 1.55005182641373 1.67950369685267 1.44150003466978 1.28155993741050 1.62131524223162 1.19331264808603 1.22088338450944 0.193291734410266 0.196226843924795 0.202282999606494 0.202646298966030 0.193291734410266 0.199306281802998 0.193668912871886 0.206724830873873 0.194820630703791 0.193291734410266 0.194676078550632 0.199024458870500 0.217431630613995 0.207057836964963 0.193291734410266 0.196704402262435 0.204453524165131 0.198177819177682 0.198114708775745 4 4 - 16279800 16280370 16280041.091 16279800 16281899 - gene protein_coding_gene FALSE TRUE AT4G33970.1 leucine-rich repeat family protein / extensin family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT1G49490.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); similar to extensin-like protein [Lycopersicon esculentum] (GB:AAD55979.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.111598601650615 0.894523741711721 0.39039936406743 1 -0.220146206524573 2.69302618852769 0.111598601650615 0.156454656234071
AT4G13940_at 11.5852192287903 11.6760354781753 11.4343540770068 11.5522810131624 11.3685805107658 11.3869388245101 11.6871644863206 12.0395395485546 11.6606750422764 11.6697005875352 11.9601552692489 12.0718574173754 11.6581782279326 11.8367361332802 12.0680879229431 11.6428887067565 11.3663806123862 11.8337625409364 11.6348313951802 0.0601984277675487 0.0596118112719713 0.0653846637877438 0.0636811803300409 0.0610658662949155 0.0679184149951916 0.060286408471146 0.060223277924698 0.0691201425042366 0.0605874931216754 0.0595778252208587 0.0595778252208587 0.0603535512714296 0.0613054257319934 0.0595778252208587 0.0596515063564745 0.0664243361245093 0.0600280963397781 0.0634623250679396 4 4 + 8056098 8056635 8056366.818 8054856 8057176 + gene protein_coding_gene FALSE TRUE AT4G13940.1|AT4G13940.2|AT4G13940.3|AT4G13940.4 HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase|HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1) Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Cytokinin binding protein CBP57) (GB:P68172); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P93253); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043)|Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to S-adenosyl-L-homocysteine hydrolase [Beta vulgaris] (GB:BAE07182.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); similar to S-adenosyl-L-homocysteine hydrolase [Hordeum vulgare subsp. vulgare] (GB:CAJ01706.1); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043)|Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P93253); similar to wheat adenosylhomocysteinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72664.1); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043)|Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043) -0.0808821167860612 -0.894247197292495 0.390540853264742 1 -0.220378322354966 23.3211765770047 -0.0808821167860612 0.0662732860864786
AT3G27100_at 7.35361191088756 7.24757560283669 7.29464142738602 7.12760590750713 7.49891694452884 7.26972634523255 7.2029965022217 6.83810276246795 6.77313334107614 7.04723051092951 7.24622712875824 7.06918768623593 6.90427915808791 7.01864972021474 6.66676816639781 7.26577657880595 7.12209699372822 6.96932181904835 7.17986939187795 0.169810018646169 0.1685998845041 0.168990116098305 0.163524446104359 0.178884847348646 0.171654638836138 0.162492732384801 0.168651895822855 0.168183717314444 0.163010845437312 0.168611916612695 0.169034063785192 0.177401810080990 0.168009286657440 0.172001882018328 0.164812322056298 0.168610650429720 0.165731942834865 0.164770342326556 3 3|0 -|/ 9995982 9997049 9996752.5 9995782 9997259 - gene protein_coding_gene FALSE TRUE AT3G27100.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88360.1); similar to Os01g0920200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045218.1); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132) 0.0849308100042987 0.89320871956941 0.391072490333414 1 -0.22124941579216 14.2455802525690 0.0849308100042987 0.0820542544712007
AT2G45880_at 4.71445465833068 4.28857845879813 4.29352980318802 4.4374322441131 4.36113471275063 4.82937600408729 3.95169940977572 4.24252636699694 4.89854392560316 4.48241166684928 4.60086302135713 4.01164400250232 4.42424392461499 4.59279373238815 4.15184592609203 4.60026380892885 3.82228430170786 4.59085326330488 4.80060790612325 0.201184224718677 0.20364834491612 0.196108296265647 0.199297118963148 0.194757368828412 0.211250639515795 0.210511582391396 0.192013378165820 0.215387421818020 0.191200303018732 0.189194062067881 0.192943593169477 0.191116020098047 0.191279596724898 0.208583574594198 0.197510124327867 0.207708251235733 0.198802757142658 0.189958841052611 2 2|0 -|/ 18885930 18886584 18886274.111 18885592 18889651 - gene protein_coding_gene FALSE TRUE AT2G45880.1 BMY4 (beta-amylase 4); beta-amylase similar to BMY9 (beta-amylase 9), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G00490.1); similar to Os09g0569200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063976.1); similar to beta-amylase [Castanea crenata] (GB:AAK30294.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) -0.0983926838435706 -0.893162099532656 0.391096368712383 1 -0.221288501257998 8.92810987249035 -0.0983926838435706 0.123089036325550
AT3G27325_at 2.63195036300484 2.89195914626349 3.01353967027634 2.79737938499354 3.86913996752020 2.95943901300389 4.35423474435222 3.41450201588209 1.96381437324704 1.59691658660759 1.79591068215013 2.27920953145099 2.47769991139434 2.19227317135716 2.30242301221966 2.35702406249611 2.70524959769841 2.21497919547172 1.94625361762057 0.230998342879645 0.222934849596210 0.229672170852164 0.223839945466271 0.233053031699769 0.232767478315024 0.227658012407083 0.237790793554365 0.23582201184402 0.237571882685439 0.231779068772238 0.235189961789948 0.230718233534368 0.222934849596210 0.222934849596210 0.230376844936606 0.227432791322957 0.224208354503574 0.227034598512177 3 0|3 /|+ 10100467 10101347 10100763.111 10097461 10103324 + gene protein_coding_gene FALSE TRUE AT3G27325.1 similar to hypothetical protein [Neurospora crassa OR74A] (GB:XP_962691.1); similar to Os09g0266400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062719.1); similar to hypothetical protein DDBDRAFT_0218240 [Dictyostelium discoideum AX4] (GB:XP_641187.1); contains InterPro domain PGAP1-like; (InterPro:IPR012908) 0.145823780638787 0.893137149805878 0.391109148161828 1 -0.221309417980550 5.30464687383952 0.145823780638787 0.233782905075771
AT2G18640_at 0.652517859776843 0.996105156354367 1.32678939151687 1.28035070925712 1.20324706758621 1.12592760130486 1.46374739048627 0.958189774182352 1.13455292865689 1.55997740012196 1.49836843790829 1.52626175634279 1.55695326989871 1.28331518341489 1.1911710711416 1.50327791498625 1.69054996250491 1.30763497824193 1.73305689561598 0.190929855067818 0.189756588071444 0.188716342978956 0.186762265650030 0.189276989445977 0.188590591747206 0.192783980010177 0.187866758372138 0.190057443576474 0.189426813692895 0.195327924042923 0.191689980952251 0.191508489526074 0.188679368604911 0.194210675876043 0.194489362268695 0.198008161208004 0.198591593940466 0.195426015995957 2 2 - 8090846 8091386 8091135.182 8090822 8091970 - gene protein_coding_gene FALSE TRUE AT2G18640.1 GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase Encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase Identical to Geranylgeranyl pyrophosphate synthetase 4 precursor (GGPP synthetase 4) (GGPS4) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] (GGPP4) [Arabidopsis Thaliana] (GB:Q9SLG2;GB:Q39107); similar to GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT2G23800.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.0926339054448107 0.89264767827643 0.391359917983186 1 -0.221719667983555 2.58613635877638 0.0926339054448107 0.106927000333911
AT1G27620_at 1.61802506299009 1.568047051327 2.02216597346489 2.2144821825484 1.67051792613781 2.05272759422582 1.92738581587192 1.85055655322221 1.91768072558989 2.13610489147378 2.10191733832251 2.12937348384945 1.74731556892009 1.98283673892781 1.98303725454524 2.12148215464644 1.56483448309232 2.00891427808702 2.05924955982455 0.188103991392584 0.189065928121443 0.192204451424653 0.195179630686838 0.188103991392584 0.193079067888158 0.190187948815441 0.194438870168983 0.189825403159989 0.194083606269594 0.191012434237808 0.188103991392584 0.192658058184717 0.194106531928309 0.188103991392584 0.188434021238228 0.198319298142099 0.189031002673476 0.190779890345110 1 1 + 9609827 9610310 9610018.909 9608405 9610529 + gene protein_coding_gene FALSE TRUE AT1G27620.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G40230.1); similar to Os01g0382200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043090.1); similar to Os01g0104900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041768.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD68809.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.0831276592471045 0.89255598467676 0.39140690755409 1 -0.221796499536045 3.86180967239599 0.0831276592471045 0.0757240803583777
AT2G29310_at 8.55026892657645 8.90100130138625 8.73956758163362 8.57165151901691 9.68300058405683 9.08162036399661 10.2787559390348 10.1280938089994 8.91169492147187 9.67092613417334 10.0636717445965 9.77587706403138 10.0741587809386 10.2466045771426 9.78831036581773 10.1276272030840 9.94768926646868 10.0814975056126 9.5224233856616 0.127773025122086 0.127441379645958 0.133361145819222 0.129875353170162 0.121376154068548 0.144799799682374 0.122857767228332 0.120315860607927 0.139087656241468 0.123212533048308 0.120038179280821 0.121086449878660 0.119579248265538 0.126271082866051 0.125472452714122 0.119977429558497 0.141289042827776 0.124594368663635 0.123362396028247 2 2|0 +|/ 12597441 12598299 12597828.556 12597136 12598440 + gene protein_coding_gene FALSE TRUE AT2G29310.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29320.1); similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29300.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.099630717268012 0.892474320356705 0.39144876078523 1 -0.221864921724478 18.9325088583695 0.099630717268012 0.126645542378881
AT2G40880_at 11.1000903115943 11.3002731222936 11.4778018457022 11.4022973890381 11.6295005115138 11.3724948811590 11.6375694495825 11.4640386847317 11.7497954709339 11.5797491694122 11.9351093265063 11.8028519478563 11.6217642935484 11.7241336549826 11.3752893423511 11.8195182008724 11.5782869481163 11.4713548389356 11.4710007721654 0.116612444219456 0.114549714106797 0.114477129672257 0.121021040673656 0.111521462465982 0.117696797551840 0.111589080864356 0.113726267470480 0.112116982298533 0.109753955819767 0.116204344560483 0.110084243737815 0.110177976951441 0.111680804765276 0.115302231603699 0.111893568746881 0.112072606188690 0.112129224507053 0.109762466499367 2 2 + 17064551 17064978 17064802.818 17064480 17065200 + gene protein_coding_gene FALSE TRUE AT2G40880.1 FL3-27; cysteine protease inhibitor cysteine proteinase inhibitor homolog similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT3G12490.2); similar to cysteine protease inhibitor [Populus tomentosa] (GB:ABK20187.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.0804437648891851 0.892239330030911 0.391569211410547 1 -0.222061777820146 23.0561184611102 0.0804437648891851 0.0651979630102451
AT4G09880_at 2.69695016455086 2.60879995995745 2.69443478812960 3.14413085444446 2.41995421383610 2.54477117411592 2.67648102454087 2.56488842789784 2.68081675029939 2.52390121395971 2.4484773695834 2.17033015987208 2.58056690421547 2.73098109765340 2.68892545671079 2.66081550056746 2.96681225231797 2.96840433577089 2.43009403302694 0.193863675724874 0.195251101748959 0.193050663038068 0.195532538294508 0.208294383706709 0.192928518682283 0.195620368251356 0.194895448056502 0.194801242451778 0.196673338152051 0.214405988152895 0.197373527644014 0.200940669426951 0.202031696659621 0.198855861878790 0.201146519941993 0.197346580730383 0.199484684664920 0.199453013650196 4 0|4 /|+ 6215122 6215300 6215204.7 6214621 6215335 + gene protein_coding_gene FALSE TRUE AT4G09880.1 unknown protein 0.0855098327762597 0.89215218755095 0.391613885169377 1 -0.222134767577661 5.26722705944169 0.0855098327762597 0.0844303168364163
AT4G04450_at 1.59568361925035 1.78868915783402 1.17219311010497 1.14778422552775 1.27091102010287 1.36343712253648 0.715592735669102 1.27972084916777 1.08809516725293 0.879330150362618 1.27842748358579 1.32063124713687 1.44251790758416 1.62877040281749 0.94052734126128 1.12550317684534 1.87501628927314 1.73995203395125 1.41981239816026 0.221662241070419 0.221148522662290 0.225632900614166 0.22545754085651 0.224641366362686 0.227385269672272 0.225160559804386 0.222244061101381 0.220995861969533 0.225118917689225 0.220455659850879 0.220455659850879 0.226593736405116 0.226344416707346 0.229111107536579 0.225067124306022 0.220610608198269 0.228493855815773 0.237168483704111 4 4 + 2220531 2221007 2220756.455 2218377 2221111 + gene protein_coding_gene FALSE TRUE AT4G04450.1 WRKY42 (WRKY DNA-binding protein 42); transcription factor member of WRKY Transcription Factor; Group II-b Identical to Probable WRKY transcription factor 42 (WRKY DNA-binding protein 42) (WRKY42) [Arabidopsis Thaliana] (GB:Q9XEC3); similar to WRKY31 (WRKY DNA-binding protein 31), transcription factor [Arabidopsis thaliana] (TAIR:AT4G22070.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABD32403.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.0917493879013435 0.891967308837356 0.391708675297135 1 -0.222289600185485 2.56575021697359 0.0917493879013435 0.104501024290685
AT3G22104_at 7.84555723557974 8.11257996420204 7.44490919207149 7.99518340326932 8.91920705096515 8.27438812957024 9.13575401970601 9.24019564748677 6.26885412576889 7.60892035125595 7.68410409551416 7.42545942618267 8.19628279651934 7.88431718429648 7.4791095614428 7.32055660335497 7.41122423005166 7.2691525397554 6.93479015686508 0.198696272218103 0.201225281516540 0.207917314310775 0.206125502691315 0.204503977162270 0.207749390485705 0.200040943532777 0.202398288259135 0.237221298372223 0.201657140224582 0.206423209443408 0.203684370922212 0.202541545254649 0.21320685540875 0.205385872930407 0.202133224878962 0.223877484724363 0.211782202252964 0.208574865531736 3 3 + 7790906 7791374 7791139.545 7789442 7792387 + gene protein_coding_gene FALSE TRUE AT3G22104.1 phototropic-responsive NPH3 protein-related similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G19850.1); similar to Os04g0674300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054238.1); similar to H0403D02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68185.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) 0.110577243617560 0.89157146278939 0.39191168507401 1 -0.222621022083407 15.6316205049912 0.110577243617560 0.154862396172106
AT3G32150_at 2.15705241978004 1.73325465473089 1.69719484343761 1.46470011587585 1.21018797540361 1.80205006740336 1.60394148578798 1.45563699964849 2.21503439339802 1.90100185558896 2.16710478037538 1.98963463348158 1.99136085426937 1.93919620799576 2.49776997398479 2.16744202902463 2.19612056825204 2.09126606928361 2.30706345757641 0.208572221916974 0.218800343529042 0.213025188576948 0.210015381286606 0.219347652362837 0.206296381626609 0.212576509161277 0.212213258324923 0.215049708776941 0.213622142078835 0.206746456347301 0.208974436644784 0.206217962777490 0.206217962777490 0.210543179023391 0.206217962777490 0.20958241488335 0.216249044504770 0.219830169010170 3 3 + 13147769 13148466 13148193.909 13147340 13148538 + gene protein_coding_gene FALSE TRUE AT3G32150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32190.1) -0.102492242697239 -0.890829143329806 0.3922925804399 1 -0.223242190196969 3.77601238281074 -0.102492242697239 0.134710945914075
AT2G20070_at 1.85793354758461 1.68937997268229 1.80965799292728 2.07675390097186 1.79298591889681 1.51415060139583 1.87977258350862 1.59220751940802 2.05727102646418 1.67945949216165 1.28135245152547 1.75357409576048 1.83593472544161 1.4626149765336 1.48589814295212 1.46007644626944 1.87644422038645 1.78381254204598 1.76525396732092 0.167342499134825 0.164588305042652 0.171857934861678 0.173820871537223 0.167965739261766 0.164896372780454 0.168634264957001 0.166035980357555 0.17171715299161 0.166485491369080 0.177082411220248 0.172245004354703 0.164614142618677 0.164003409937589 0.161445476121897 0.165162120817301 0.163071592442064 0.163828122001737 0.165612067324206 2 2 + 8669121 8669481 8669319 8669119 8669688 + gene protein_coding_gene FALSE TRUE AT2G20070.1 similar to LCR81 (Low-molecular-weight cysteine-rich 81), ion channel inhibitor [Arabidopsis thaliana] (TAIR:AT2G25295.1); contains domain Scorpion toxin-like (SSF57095) -0.0864838403912288 -0.890564562149708 0.39242840303868 1 -0.223463483262534 3.50233439405357 -0.0864838403912288 0.0882737119784873
AT4G28190_at 1.77108846787561 1.56102455471726 1.17753072555391 1.56187891870491 1.32001922942678 1.40323371451317 1.36502792437374 1.2622844359526 2.77667539591097 2.01814961891342 3.86431337408776 2.90309466118781 2.33255062836684 2.92631597347665 3.31155211645245 1.76287089846509 1.38550020776140 2.01238491034501 2.01648160167374 0.247521529276801 0.248766814938165 0.246397926388628 0.245962331956866 0.244791138677857 0.253983127888305 0.251051420394159 0.246307495052888 0.256212882535201 0.247264384295118 0.255616851806892 0.249283449466584 0.249319069020167 0.247712052875344 0.259560540197323 0.253099745461798 0.2510128872402 0.244791138677857 0.244791138677857 4 4 + 13985881 13987025 13986605 13985476 13987267 + gene protein_coding_gene FALSE TRUE AT4G28190.1 ULT1 (ULTRAPETALA1); DNA binding Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. Identical to Protein ULTRAPETALA1 (ULT1) [Arabidopsis Thaliana] (GB:Q8GZA8;GB:Q8L8S8;GB:Q9M0I8); similar to ULT2 (ULTRAPETALA 2), DNA binding [Arabidopsis thaliana] (TAIR:AT2G20825.1); similar to Os01g0780800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044439.1); contains InterPro domain SAND; (InterPro:IPR000770) 0.0838483043775277 0.890259459745191 0.392585067624826 1 -0.223718598213055 3.84414018894004 0.0838483043775277 0.079177237981248
AT1G78140_at 8.76768053983053 9.30757127268367 9.0151447034846 8.89136256173803 9.87666558598714 9.1665621109291 9.98647251986683 9.5884994421508 8.87008053465577 9.36441847802553 9.64402534493087 9.58369160358117 9.28361476336716 9.628160148027 9.29340638689033 9.77751232336802 9.62804637314914 9.54945998575253 9.18444701288227 0.181323904744215 0.168337416567926 0.180470735582464 0.178168620424263 0.172884502341703 0.18483442556406 0.168337416567926 0.179230555982028 0.201894480430059 0.168337416567926 0.173817014261217 0.168337416567926 0.174368470803027 0.171196780375431 0.187593830080837 0.169528974628629 0.186295650746091 0.179702850133558 0.172816401521810 1 1 - 29406873 29407588 29407210.636 29406652 29408839 - gene protein_coding_gene FALSE TRUE AT1G78140.1 methyltransferase-related similar to methyltransferase-related [Arabidopsis thaliana] (TAIR:AT2G41040.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99645.1); similar to Os08g0411200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061786.1); similar to Os06g0646000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058196.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.116859368923591 0.890043389564109 0.392696041968619 1 -0.223899222686465 18.6690639877444 0.116859368923591 0.170389303676231
AT1G36150_at 1.92008280871821 2.08907385316982 2.38400890164551 2.40884246054917 2.10626621576836 1.71409354979895 2.31384306588420 2.25508631700447 2.20212832398892 2.638667995285 2.16796783681199 2.25040796944283 2.07445962258296 2.15872583160841 2.25991726201488 1.96723490660360 2.56175401172003 2.26431478284772 2.32059974931308 0.222900731636694 0.228140732164662 0.227927452483001 0.232352173982059 0.23301131433297 0.246828483299841 0.224451527230347 0.224312877014212 0.2490600772577 0.232477112176983 0.220759367475587 0.220759367475587 0.227432579469228 0.221201570086849 0.223794879686869 0.224284178450929 0.228909657943698 0.233958435432349 0.223133876294246 1 1|0 +|/ 13529651 13530647 13530185.8 13529469 13530682 + gene protein_coding_gene FALSE TRUE AT1G36150.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G08670.1); similar to xylogen protein 1 [Zinnia elegans] (GB:BAD24657.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.082626487080976 -0.890028234144451 0.392703826656476 1 -0.223911890497145 4.44902704697553 -0.082626487080976 0.0747200329004086
AT1G09930_at 1.97097845607050 1.85017240970316 1.52249635320332 2.25404383914172 1.86389526353143 2.27369402166920 1.78084411152983 1.85077302086117 2.14013378164822 2.26265573176932 2.25648797732088 1.99952707923622 2.18421243474372 2.62349017220209 2.51109814238541 2.27682308940964 2.25404338838070 1.94154342901158 2.06746472586599 0.229882566061891 0.236494774801117 0.242127603078145 0.236005348259478 0.242951369181785 0.234551278476296 0.233623629106182 0.230869229398858 0.236357221670484 0.232492045484763 0.231292856950829 0.231537580107122 0.239432905359853 0.234418050601527 0.24180084568612 0.243524645838391 0.249669537892258 0.249873141779317 0.234915437674058 1 1 - 3227511 3228046 3227826 3227492 3230045 - gene protein_coding_gene FALSE TRUE AT1G09930.1 ATOPT2 (oligopeptide transporter 2); oligopeptide transporter oligopeptide transporter similar to ATOPT4 (oligopeptide transporter 4), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G64410.1); similar to ATOPT7 (oligopeptide transporter 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G10770.1); similar to ATOPT8 (oligopeptide transporter 8), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53520.1); similar to isp4 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89477.1); similar to Oligopeptide transporter OPT superfamily [Medicago truncatula] (GB:ABE92893.1); similar to Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily [Medicago truncatula] (GB:ABE84685.1); contains InterPro domain Tetrapeptide transporter, OPT1/isp4; (InterPro:IPR004648); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) 0.107246085418513 0.889983662715188 0.392726721703832 1 -0.223949144909448 4.12718949805418 0.107246085418513 0.147104699329237
AT1G77980_at 2.23732629675661 2.05019511433128 2.16282370807186 2.06025450066566 1.60179609257902 1.94130956650817 1.94872713223963 2.04023037559227 1.99655315515981 2.06719962800167 2.03325297137951 1.93610644505220 2.17515210704492 1.85087288414865 1.86435950752892 1.73320028359074 2.45018650381959 2.1964396176259 2.13350740954459 0.202429461951166 0.201934715462929 0.198942787889928 0.206898866293696 0.204508987577413 0.199106869209105 0.198942787889928 0.211881220698059 0.210768204347017 0.209573495925989 0.202195055197178 0.199722300083456 0.205249801345687 0.202912492391297 0.207221146023681 0.202166735110213 0.202162939433921 0.204918392625027 0.200606949330252 1 1|0 -|/ 29320107 29320746 29320359 29319735 29321961 - gene protein_coding_gene FALSE TRUE AT1G77980.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G22130.1); similar to Os06g0223300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057183.1); similar to putative MADS-box protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10025.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0816904351593257 -0.88980080647896 0.392820659311392 1 -0.224101966090595 4.05318269213931 -0.0816904351593257 0.071180133674229
AT2G41470_at 1.81876916066186 2.15250467405069 2.54827872964984 2.30070942647013 1.96768013889514 2.24492204574284 2.36571420825785 2.37596058832105 1.98842016028185 1.91503944358944 2.28609291001067 2.03277145203299 2.26081966726073 2.05571385410781 2.27716233136888 1.90891900866821 2.18359150601360 2.18170651027082 2.28783127596686 0.216819087583306 0.217718407022666 0.220664898879188 0.220861161236956 0.216819087583306 0.220412628364113 0.216880842926918 0.221795836960894 0.222656155418649 0.218984053581902 0.220842471091558 0.219174756356338 0.222507498457812 0.226500235948121 0.221009136763108 0.220613717010363 0.231430326895890 0.229613629229420 0.216819087583306 2 2|0 -|/ 17299279 17302354 17300215.333 17299223 17303439 - gene protein_coding_gene FALSE TRUE AT2G41470.1 embryo-specific protein-related similar to embryo-specific protein-related [Arabidopsis thaliana] (TAIR:AT5G62200.1); similar to Lipase/lipooxygenase, PLAT/LH2 [Medicago truncatula] (GB:ABD28725.1); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Embryo-specific 3; (InterPro:IPR010417) 0.0858719778603115 0.88976279395645 0.392840189203674 1 -0.224133731499119 4.32787276229589 0.0858719778603115 0.0864646661921657
AT1G69540_at 1.57160459923024 1.94192379474922 2.39104381375655 2.21014360307911 1.92815103864779 1.71841022819893 1.62602015056548 1.98867280083261 2.26249643224244 1.83910709564491 1.71241758038313 1.68266682219733 1.65891991454492 1.54317619474757 1.09912259913484 1.7602981131898 1.67975041355741 1.56137596842530 2.04286456405085 0.284261785449894 0.275654451042284 0.291570117735455 0.284277266638506 0.282086517872413 0.294491739400602 0.275654451042284 0.290180540232117 0.286464738284335 0.278551368218167 0.275654451042284 0.287091083218323 0.311605219880669 0.289571118690364 0.292021330159581 0.275654451042284 0.282099766777216 0.290512496552749 0.275654451042284 1 1 - 26150644 26150757 26150682.714 26148707 26150822 - gene protein_coding_gene FALSE TRUE AT1G69540.1 DNA binding / transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G03060.2); similar to SRF-type transcription factor family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0905291226486614 -0.889066718850886 0.393197934226169 1 -0.224715206221474 3.7396822443418 -0.0905291226486614 0.101700994913867
AT3G21500_at 3.07006685382739 2.90060129630796 3.01174108441502 2.84299269388 2.72815220848468 2.9565459147237 2.62072939046450 2.86297302079917 2.99440513581444 3.37453618488295 2.93997291055682 2.90761470516552 3.2974985249782 2.61972186081742 3.24595021938142 2.81207765104944 2.81023415989344 2.21168548436915 2.75098904235436 0.254811578546741 0.255634198072505 0.254138762907903 0.261282662391565 0.265955288023373 0.263090575540868 0.271178148369341 0.254842840251747 0.255715579191308 0.254138762907903 0.254138762907903 0.260136556524250 0.259125487611233 0.274844147585424 0.257293276607343 0.254138762907903 0.275474314633732 0.257647210894058 0.256661953689901 3 3|0 -|/ 7574075 7574622 7574334.2 7573640 7576584 - gene protein_coding_gene FALSE TRUE AT3G21500.1|AT3G21500.2 DXPS1; 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. similar to CLA1 (CLOROPLASTOS ALTERADOS 1) [Arabidopsis thaliana] (TAIR:AT4G15560.1); similar to DEF (GB:AAC49368.1); similar to Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (CapTKT2) (GB:O78328); similar to CLA1-like protein [Brassica rapa] (GB:ABE60813.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Deoxyxylulose-5-phosphate synthase; (InterPro:IPR005477); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Transketolase, N-terminal; (InterPro:IPR005474) -0.0815585065656988 -0.889026225220278 0.393218752704958 1 -0.224749021101126 5.82201092146797 -0.0815585065656988 0.0709398025283378
AT1G77890_at 2.52126146463448 2.78380943364160 3.37562226001394 3.36217830054364 2.94612718294646 2.59829058679382 3.13389565907516 2.71353163667437 2.77601845719449 2.90019133311116 2.83141408598077 2.56098214190414 2.83344123358457 2.87336757028099 2.26306166773767 2.78253491884587 2.59475699276436 2.85263087045859 2.71889172445648 0.169119811902596 0.166679181496874 0.178166419030075 0.170670706590587 0.165665315362090 0.185253152395502 0.166375416636529 0.166782717339949 0.170825562304177 0.169727642079673 0.166432139417169 0.168384714456381 0.166559552572240 0.177798804165417 0.170736998619513 0.165581053405696 0.171096482197599 0.169311384195043 0.164922099350981 1 1|0 +|/ 29297593 29300296 29299244.462 29297017 29301054 + gene protein_coding_gene FALSE TRUE AT1G77890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08540.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79707.1); similar to Os07g0626300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060335.1); contains domain DNA-DIRECTED RNA POLYMERASE II (PTHR21297) 0.0915432738376554 0.88896517477185 0.393250141243031 1 -0.224799999806677 5.67803499393143 0.0915432738376554 0.104810051748170
AT4G04920_at 5.71535117231139 5.75507493340014 5.43901206688976 5.65888452485547 5.88677398038539 5.33316669511222 5.09988979720092 5.24032578711039 4.73461355572878 4.83043995143804 4.87609926465257 4.91586344217737 5.39011375555773 4.89155293474849 4.82987973997264 4.9880837724052 5.0356348618978 4.75419959975034 5.14408303768322 0.253582066321296 0.252176243153676 0.248056886760651 0.251359757643370 0.253812420515099 0.268201061295549 0.256104653338828 0.263463147380757 0.263490322967137 0.255033148243996 0.249289693566997 0.248602243714375 0.256182236809102 0.252061053182399 0.258981437086212 0.246749944264489 0.258245433461660 0.257163156720322 0.261886412096502 4 4|0 +|/ 2504078 2504748 2504462.5 2497929 2504798 + gene protein_coding_gene FALSE TRUE AT4G04920.1 similar to putative glycine-rich protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93675.1); similar to WD40-like [Medicago truncatula] (GB:ABE83509.1); similar to hypothetical protein, 3'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAL58272.2); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044) 0.0919659003751266 0.888781256839729 0.393344711472312 1 -0.224953557970087 10.4476718378309 0.0919659003751266 0.106132771581453
AT4G15850_at 1.7778669663502 1.88861293073699 1.89947777190466 1.65873395177670 1.94681204399975 1.83739261480348 2.33084168847543 1.61205087109418 1.34739868853515 1.57032604337040 1.47391745332529 0.719535690414463 1.55025857083911 1.10300411714441 1.48679420593128 1.63413539353458 1.85979397580287 1.5127770373174 1.7463637195471 0.200081419100022 0.199131890479771 0.196267864072987 0.202515641266271 0.196783600983751 0.202307734501648 0.200968323307668 0.19568917387312 0.199788326687888 0.205759103027253 0.200708801582825 0.196039786995625 0.198767156203608 0.197760544486643 0.197476533774975 0.199864195647082 0.198966353966128 0.202142026877710 0.201406444843785 4 4|0 +|/ 9003295 9004122 9003715.222 9001344 9004749 + gene protein_coding_gene FALSE TRUE AT4G15850.1 ATRH1 (Arabidopsis thaliana RNA helicase 1); ATP-dependent helicase plant DEAD box-like RNA helicase. Identical to DEAD-box ATP-dependent RNA helicase 1 (EC 3.6.1.-) (RH1) [Arabidopsis Thaliana] (GB:Q7FGZ2;GB:O22679;GB:O23251); similar to DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana] (TAIR:AT4G16630.1); similar to Os02g0795900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048386.1); similar to putative DEAD box-like RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD19076.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.101954056744296 -0.88877872971599 0.393346011023847 1 -0.224955667746511 3.35508520790412 -0.101954056744296 0.133919613260104
AT4G15270_at 4.42453898972008 3.4853205675991 3.78973813176181 3.83971052901469 3.32345408521131 4.04518251520286 3.41491255306449 3.39418632329874 3.84024905722051 3.89128928121814 3.68159038648944 3.99589164155097 4.08989841660194 4.21833727891768 4.14669140660683 4.04160515660055 3.83016151702147 4.02120467076318 3.69563838902833 0.254502055376734 0.261306490973685 0.255602568502998 0.261400607727302 0.268128721496693 0.257696265556293 0.267279483383816 0.252460824492612 0.253835816470995 0.250855572051224 0.260758405606868 0.252081710944078 0.252568279138569 0.250521370765425 0.250521370765425 0.252360372690175 0.260404720718383 0.251941117392726 0.253551509294022 4 4 - 8716835 8717332 8717079.909 8716601 8717796 - gene protein_coding_gene FALSE TRUE AT4G15270.1 glucosyltransferase-related similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G15280.1); similar to UDP-glucose glucosyltransferase [Fragaria x ananassa] (GB:AAU09444.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.131947678520209 0.888695322643052 0.393388904057455 1 -0.225025297502521 7.62074619609647 0.131947678520209 0.205195694604015
AT3G24180_at 8.84841197273783 8.78868019994619 8.86945662597411 8.53500389824155 7.84979188040586 7.94967341797484 8.22007124280075 7.91857772776484 8.24604449972288 7.92413467830047 7.44414677698234 8.2210880665514 7.68471635102915 7.8958003036444 7.61809065401579 7.97757759979529 7.78174082510808 8.14270837801 7.44178206318645 0.171347770804412 0.174831981377649 0.174927571649133 0.169990689472368 0.167811049761201 0.170205619534378 0.166437490276218 0.176206022739634 0.170870012731741 0.172718366860844 0.167630072683108 0.167893172108390 0.166375089789908 0.175905934357055 0.182155702856749 0.170137712613265 0.170026843289584 0.172610527222264 0.170321248622871 3 3 - 8735102 8735674 8735397.091 8734641 8741732 - gene protein_coding_gene FALSE TRUE AT3G24180.1|AT3G24180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49900.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33700.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10060.1); similar to unknown protein [Oryza sativa] (GB:AAL31035.1); similar to unknown protein [Oryza sativa] (GB:AAG16864.1); similar to At5g49900 [Oryza sativa (japonica cultivar-group)] (GB:AAX95400.1); contains InterPro domain Protein of unknown function DUF608; (InterPro:IPR006775) -0.0839369789205926 -0.887371267051001 0.394070248186416 1 -0.226129895618990 16.2306520539617 -0.0839369789205926 0.0804845917032774
AT3G01890_at 3.0189462078686 2.83287261477404 2.61013246125664 3.05512949827508 2.67096956237826 3.02205626702471 2.81269383848609 2.96512308555035 3.54138486426994 3.31932215415506 2.79712959069121 3.34827599727423 3.29027208170084 3.00768972003313 3.43468471485509 3.44328190882278 3.26928347100672 2.58487452348463 2.92812641988990 0.197700345592838 0.200640932914004 0.200456969886731 0.197130905139338 0.198999597470285 0.202071193704979 0.201739910932697 0.206296097664725 0.200741576892633 0.198315218673064 0.203762386942306 0.196502075723252 0.201211688369738 0.201446075950676 0.204528713434713 0.195777950525017 0.205534390213998 0.20238455835714 0.199817372531015 3 3 + 311089 311635 311351.909 310022 311983 + gene protein_coding_gene FALSE TRUE AT3G01890.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G14170.1); similar to OSJNBa0072D21.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40740.2); similar to OSIGBa0092E09.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66378.1); similar to SWIB/MDM2 [Medicago truncatula] (GB:ABE78941.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.0919224839454086 -0.886986890157527 0.394268196973347 1 -0.226450299823987 6.07843093216266 -0.0919224839454086 0.106557598704945
AT1G80240_at 1.62440246001015 1.28552287695435 1.56286417945945 1.49126855538548 1.70687672879537 1.31961237059995 1.91042735047269 1.56489384765793 1.92720311406528 2.05805745442082 2.05972688427335 1.76373401664728 1.68410825878069 2.13825848366538 1.57081764299556 1.98479794273560 2.16944364505482 1.51617446763706 1.92318763334251 0.217779572046817 0.221159256334049 0.215840016793242 0.216930424781455 0.215093375566271 0.221084284298952 0.216961142776256 0.212543772072393 0.214729877582917 0.220498439532650 0.211309701127827 0.221415735052836 0.217544572135534 0.212538616969979 0.212606888903715 0.215025655832598 0.212608868226710 0.220178468560300 0.214822402250831 1 1 - 30176468 30177049 30176713.182 30176249 30177731 - gene protein_coding_gene FALSE TRUE AT1G80240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25460.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.0923781207164334 -0.886764224110928 0.39438289835066 1 -0.226635852797584 3.47341624700021 -0.0923781207164334 0.107980062827342
AT2G25340_at 1.96368820596202 1.55471883989567 1.80655289180657 1.87356527101804 1.77843867667246 1.90370257155187 1.17423746724185 1.99895578909459 1.31266670157481 1.41648117997061 1.73991417548550 1.60001233012417 1.54943656678296 1.84947715753120 1.57711699675176 1.58818478855378 2.02082431109861 1.68363232060245 2.20165489809853 0.227887515403648 0.223209766901424 0.240461808237502 0.228460143997895 0.231060814682977 0.229496135265166 0.224047558552191 0.231668341956619 0.235295518544370 0.239133365253456 0.226061833809956 0.227124840057210 0.228098980436778 0.229090419119863 0.229377437862322 0.234987918631180 0.228906354777961 0.225550251652267 0.229004255982968 2 2|0 -|/ 10799775 10800824 10800429.444 10799743 10800911 - gene protein_coding_gene FALSE TRUE AT2G25340.1 ATVAMP712 (Arabidopsis thaliana vesicle-associated membrane protein 712) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. Identical to Vesicle-associated membrane protein 712 (AtVAMP712) (VAMP712) [Arabidopsis Thaliana] (GB:Q9SIQ9); similar to VAMP7C (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7C) [Arabidopsis thaliana] (TAIR:AT4G32150.1); similar to Lon (GB:ABE77680.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.112569340766011 0.886686513285367 0.394422934754254 1 -0.226700601724079 3.42907034286253 0.112569340766011 0.161191660019221
AT1G77250_at 5.24646113157195 5.14531739873409 5.11792808105639 4.89473840284335 5.52947293294734 5.09212275097271 5.04849954924691 5.51682613688555 5.30713594486694 4.54450132741433 4.9280837247395 5.30021809870926 5.11032615346123 4.94501773230471 5.0904132965945 4.92955834806505 4.82087849904213 4.57236742568505 5.36911412463515 0.236944722195773 0.241652680129682 0.240535253412334 0.235948102159394 0.23326450170794 0.241716572208074 0.235134145111044 0.233036032442617 0.253466002163244 0.234686558085192 0.234796181000901 0.230899806277926 0.231936483741077 0.238558197498093 0.231046332436584 0.231383135405615 0.239095814579063 0.243095523758970 0.232936858917972 1 1 - 29025343 29025859 29025604.091 29025159 29028368 - gene protein_coding_gene FALSE TRUE AT1G77250.1 PHD finger family protein similar to MBD9 (METHYL-CPG-BINDING DOMAIN 9), DNA binding [Arabidopsis thaliana] (TAIR:AT3G01460.1); similar to Os01g0547200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043287.1); similar to Os08g0105000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060783.1); similar to PHD finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82577.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Endoplasmic reticulum ERp29-type, C-terminal; (InterPro:IPR013331) -0.0960932006508164 -0.886583180273768 0.394476175989105 1 -0.22678669163057 10.2167666524309 -0.0960932006508164 0.118722141550558
AT2G15780_at 0.778970102121829 0.557970583084229 1.00017880430428 0.444261190128801 0.646076208201936 0.769916862490867 0.479831321257762 0.525278295120873 0.86563683691723 0.800244688239895 1.27697810648899 0.547337813261773 0.709669801194497 0.826574249457212 0.774558547153342 0.59090341236947 0.920576846582749 0.982763508757889 0.658975642187617 0.205109958335416 0.200968915306287 0.202360317306162 0.204207893411414 0.206521848169081 0.207577144018634 0.205501096517522 0.207414743722898 0.223431773803108 0.209702512311731 0.206381928855755 0.206028147661751 0.216371429247107 0.200968915306287 0.200968915306287 0.204212025927672 0.203141944412774 0.206459924464377 0.203943582325132 2 2 - 6880793 6881565 6881231.364 6880627 6881823 - gene protein_coding_gene FALSE TRUE AT2G15780.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G15770.1); similar to Os06g0216700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057147.1); similar to major ampullate spidroin 2-2 [Kukulcania hibernalis] (GB:AAT08435.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.0916567937143121 0.886175868009078 0.39468608767882 1 -0.227125952450303 1.4521217582254 0.0916567937143121 0.106014467331735
AT1G48450_at 10.0960884704427 10.1186685102637 10.1657937299198 10.1509523908654 10.2805592428861 10.1665556442595 10.3631112081517 10.4807778657287 10.6911002729654 10.7539063276767 10.7802553319376 10.4866623190032 10.5442627036950 10.6364345399379 10.8458881902038 10.6637134414209 10.3744742539599 10.6053919366528 10.6259440160912 0.071328917408203 0.0682525976367598 0.0696207051189973 0.0699782779898468 0.071632693515833 0.0729983068634517 0.0705189354355461 0.0677287394056336 0.0792800853257142 0.0696466156334592 0.0682484321599074 0.0693079784227709 0.0718102239330364 0.0708729221556407 0.0679341823230997 0.0684001483995488 0.0696751409460342 0.0718942842792305 0.0694823290872059 1 1 - 17912419 17912987 17912680 17912171 17914118 - gene protein_coding_gene FALSE TRUE AT1G48450.1|AT1G48450.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38836.1); similar to Os03g0717900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051084.1); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) -0.073438897153518 -0.886051708595022 0.394750089591412 1 -0.227229341499915 20.8815394887376 -0.073438897153518 0.0287356142906824
AT4G00230_at 3.36353915168696 2.73080786454957 2.61154590243249 2.24885590431651 2.84750321402455 2.79316521145238 2.64981023081926 2.65441266093486 3.31783012616643 2.89847578583874 3.50409837228663 3.08808667716290 3.02293413224680 2.846024840379 3.52669236430647 2.97688028882051 3.12913926539793 3.54168081116241 3.31708636008569 0.191903052029560 0.19391986622885 0.194619431332189 0.191734115509263 0.192917346923449 0.197538014551957 0.192376601470630 0.192535942355068 0.206519443774473 0.201240609584426 0.191734115509263 0.191734115509263 0.19702298547506 0.201138726617491 0.196211913804792 0.191734115509263 0.191734115509263 0.194734723196388 0.197591086968103 4 0|4 /|+ 96826 97248 96981.6 93923 97452 + gene protein_coding_gene FALSE TRUE AT4G00230.1 XSP1 (XYLEM SERINE PEPTIDASE 1); subtilase Identical to Xylem serine proteinase 1 precursor (EC 3.4.21.-) (AtXSP1) (Cucumisin- like protein) (XSP1) [Arabidopsis Thaliana] (GB:Q9LLL8;GB:O81324); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G03620.1); similar to subtilisin-like protease C1 [Glycine max] (GB:AAN12272.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.0988651245005678 -0.885890043618344 0.394833435684769 1 -0.227363943322397 5.92857477652738 -0.0988651245005678 0.126562806063805
AT4G25780_at 2.18467878940262 2.02664724965977 2.62027620656112 2.71878932311132 2.66952422205082 2.86862796205506 5.17571906473159 5.27649359887651 4.35398335447518 5.0071265639575 5.78063817651557 5.74408489127489 6.5762763049362 5.85791390246237 4.26962150514141 4.49434737811244 4.34284585007561 4.89172555092686 3.99332295993785 0.294865887940561 0.299938909882197 0.291767347393702 0.311160755601243 0.291208095782434 0.291686101218993 0.290910130686921 0.300352237427933 0.286767035696579 0.284546384728333 0.287944902904242 0.284845917934407 0.284546384728333 0.290755118597509 0.290404952891785 0.284546384728333 0.290526416337256 0.284546384728333 0.284546384728333 4 4 + 13121147 13121660 13121401 13121077 13121964 + gene protein_coding_gene FALSE TRUE AT4G25780.1 pathogenesis-related protein, putative similar to allergen V5/Tpx-1-related family protein [Arabidopsis thaliana] (TAIR:AT5G57625.1); similar to Allergen V5/Tpx-1 related [Medicago truncatula] (GB:ABE83411.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.0766880892079379 -0.885747606745236 0.394906878837944 1 -0.227482518474680 8.04067421258319 -0.0766880892079379 0.0502980954682595
AT1G42470_at 7.67606653832979 7.74589625314006 7.7500114404436 7.66226170190099 8.19837303869781 7.84861742422751 8.09149742902158 7.90302289473358 8.05226278978314 8.08803017126867 8.3665816869986 8.53226362624671 8.12766760414403 8.67850572722046 8.26957399087825 8.40832563992963 8.04667765302904 7.88685987223858 8.27219026793518 0.166641977549317 0.148867877295371 0.148697187827472 0.155197638219161 0.149442377820920 0.151470765572364 0.144939589093970 0.146511450858603 0.159473102608659 0.150826513063319 0.150646487370387 0.149771749017272 0.150687898296128 0.150848509689873 0.154880883913511 0.148096164121018 0.15156859315391 0.148654320416115 0.146673156270306 1 1|0 +|/ 15936242 15937499 15936908.111 15929427 15937648 + gene protein_coding_gene FALSE TRUE AT1G42470.1 patched family protein similar to patched family protein [Arabidopsis thaliana] (TAIR:AT4G38350.1); similar to hypothetical protein SNOG_13186 [Phaeosphaeria nodorum SN15] (GB:EAT79513.1); similar to hypothetical protein MG00819.4 [Magnaporthe grisea 70-15] (GB:XP_368425.1); similar to H0409D10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66746.1); contains InterPro domain Niemann-Pick C type protein; (InterPro:IPR004765); contains InterPro domain Patched; (InterPro:IPR003392); contains InterPro domain Sterol-sensing 5TM box; (InterPro:IPR000731) 0.0813788439672802 0.88568579910687 0.394938750964651 1 -0.227533966723199 16.0729940324359 0.0813788439672802 0.0714419968793452
AT1G80550_at 4.01133637584652 4.6239009472869 4.01254388795977 4.04211917170054 5.02919293953588 4.16557270863807 5.38632589965472 4.65241447773053 4.13447846220193 3.81031865032331 4.18131509597456 4.42095070868932 4.20762761329115 4.33153123792142 3.68415137696129 4.41875481355117 3.49471255126273 3.94787643746455 4.08181593081984 0.220460102237602 0.216972439344889 0.215003872040904 0.209781405595335 0.213637323124989 0.222157630358485 0.209781405595335 0.215358286726907 0.211322406815375 0.21276710477403 0.215247257465192 0.213210535823902 0.210220270481348 0.216173181496739 0.2199168113613 0.209781405595335 0.223997558211230 0.211157416637139 0.210398579112717 1 1 - 30290259 30290778 30290574.727 30289838 30291596 - gene protein_coding_gene FALSE TRUE AT1G80550.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15010.1); similar to H0306F03.10 [Oryza sativa (indica cultivar-group)] (GB:CAH68243.1); similar to Os04g0643700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054053.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.139571641614971 -0.885431851587208 0.39506972183556 1 -0.227745318651932 8.53779379796306 -0.139571641614971 0.223004012456014
AT4G31010_at 5.75689263038188 6.1302531887985 5.44863261627393 5.73052239829808 6.18970349692185 6.22508454417951 5.3497248794993 5.5766063417583 5.06896075998558 5.48383384517578 4.94130840738007 4.86019244332111 5.24997390590854 4.77734732243083 4.80773773812464 5.07485760482078 4.60115535601315 4.94904728769873 5.27496622578548 0.312059325424044 0.300542431392733 0.303212695556125 0.307329152643156 0.315868427972423 0.328961176893454 0.310402398346845 0.305109503062711 0.316377766184074 0.311517964056138 0.316798517429429 0.306222290807774 0.300338814111190 0.308691623795847 0.300338814111190 0.300338814111190 0.314480033985961 0.322233594158235 0.319345188016405 4 4 + 15107541 15108015 15107732.5 15106650 15108642 + gene protein_coding_gene FALSE TRUE AT4G31010.1|AT4G31010.2 DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54890.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE81273.1); similar to CRS2-associated factor 2 [Zea mays] (GB:AAP22136.1); similar to Os08g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061110.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54890.1); similar to Os08g0188000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061154.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE81273.1); similar to Os08g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061110.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.0865506324805997 -0.885383668459548 0.395094575183316 1 -0.227785413988753 10.8927389046112 -0.0865506324805997 0.0901857195545719
AT4G13630_at 5.80740017410924 5.74890588886317 5.8176732904743 5.5624716580646 6.48610156866235 5.57387828560374 5.53159252386696 5.43990457954989 4.98411578632846 4.9933964863783 4.674758199264 4.53486730967399 4.79852932360857 4.902597355886 4.88806044127431 4.89815582564538 5.28338859833959 5.01451097747559 4.64600774579557 0.23652065255434 0.225154434291089 0.233077114989451 0.228871996484406 0.239533179138268 0.247381865598194 0.224174799388787 0.228497845043197 0.231765833690147 0.228987342167967 0.227124619876331 0.224174799388787 0.227742647681378 0.229219275277246 0.230942570700848 0.228597624411063 0.238907020741998 0.231065504748593 0.239220279562657 4 4 - 7934089 7934784 7934499.273 7933904 7936512 - gene protein_coding_gene FALSE TRUE AT4G13630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04890.1); similar to Protein of unknown function, DUF593, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95673.1); similar to Os03g0259900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049616.1); similar to Os04g0311500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052441.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.113966120082874 0.885226931104294 0.395175429376907 1 -0.227915829248083 10.6204235845143 0.113966120082874 0.165002649099639
AT4G29650_at 1.91096396294783 1.39293173511164 1.89293814943012 1.87524872240373 1.92365151867149 2.00721931960568 1.61959957817230 1.69319660282805 2.49224970731553 2.41898788426968 1.96067785042456 1.78907485109332 2.70546454062282 2.18495739759772 1.98035670024213 2.32735868357711 2.31074401333232 2.30224039076257 1.96386202827024 0.226685376461827 0.226725590222908 0.227073055992928 0.226590124184687 0.227912812122587 0.224107593164081 0.226414677447168 0.221259035456562 0.234899618281688 0.229396889972273 0.223099203680090 0.223170116375798 0.221056189501681 0.218022307893261 0.218942519674264 0.218542471328943 0.229691924175267 0.234062294788095 0.238849808992201 4 4 + 14528776 14529308 14529054.545 14528593 14529348 + gene protein_coding_gene FALSE TRUE AT4G29650.1 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29610.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) 0.0870004439671117 0.885162806217285 0.395208511996581 1 -0.227969179463010 4.03287328701721 0.0870004439671117 0.0917467876567945
AT1G78815_at 1.60872709357740 1.33606539114403 1.51314551758815 1.61003105529873 1.22437251459927 1.52940404101497 1.64190037487215 1.36783570757105 1.78264085351067 1.68007164789248 2.02211772093643 1.70093538708929 1.62905696013831 1.76817633844519 1.81281556051585 1.30985168654920 1.78107364039604 1.66264925172231 1.09839167024004 0.192111565961709 0.193378989369715 0.198179764663358 0.193921757785270 0.196040909978921 0.190643952265704 0.194213623086654 0.192960474665951 0.195976039234017 0.189889628368461 0.202525589748054 0.189889628368461 0.200780098740682 0.194721351732685 0.202181242348636 0.196697154044729 0.195520982081856 0.193026764866313 0.204372317759431 1 1 - 29636948 29637479 29637258 29636636 29637638 - gene protein_coding_gene FALSE TRUE AT1G78815.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16910.1); similar to Protein of unknown function DUF640 [Medicago truncatula] (GB:ABE92798.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) 0.0855363256719008 0.885109382543669 0.39523607522228 1 -0.228013624026521 3.09453652467746 0.0855363256719008 0.0868532523987325
AT1G59610_at 8.2138515624922 8.41990488748634 8.23948124511485 8.62125523917585 8.53316739734741 8.33622513908511 8.22406100205171 8.11396305578694 8.38858143969441 8.16920846904543 8.46588996978255 7.96629295171871 8.23488792844315 8.26332458865589 8.23071633734051 8.27595773780434 8.19363438567298 8.2040987154715 8.1897174252762 0.132914252438279 0.130892045036027 0.136907725094433 0.127283205251214 0.135388141935351 0.137925672990589 0.133911025544871 0.131722408089932 0.143061895576013 0.128379957186707 0.132117478210990 0.132406645955368 0.141564026664872 0.137184854568547 0.136464274110591 0.127820836003057 0.148069020336757 0.138796683788525 0.130124979399258 1 1|0 +|/ 21903640 21904413 21904112.7 21896886 21904751 + gene protein_coding_gene FALSE TRUE AT1G59610.1 ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) A high molecular weight GTPase whose GTP-binding domain shows a low homology to those of other plant dynamin-like proteins.Contains a pleckstrin homologous domain. Identical to Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B) (Dynamin-like protein 3) (DRP2B) [Arabidopsis Thaliana] (GB:Q9LQ55;GB:Q9SLT3;GB:Q9SLT4;GB:Q9SXX3); similar to ADL6 (DYNAMIN-LIKE PROTEIN 6) [Arabidopsis thaliana] (TAIR:AT1G10290.1); similar to putative dynamin homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD16041.1); similar to DRP [Cucumis melo] (GB:AAU04752.1); similar to dynamin homolog [Astragalus sinicus] (GB:AAF19398.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.0848841718745148 0.885047678916692 0.395267912030685 1 -0.228064954046356 16.5769984101675 0.0848841718745148 0.0846230522094193
AT1G53720_at 4.46902290582566 4.49324482401724 4.51090451286693 4.59665593455083 4.36109017111106 4.34472186006376 4.89287732981629 4.43241869757389 4.99032395677051 4.8167231752206 4.99724283711568 4.8777469490474 4.66907465328867 4.87717793993413 4.88607732952889 4.58180273342829 4.65878907880081 4.87032068057528 4.74745245985545 0.175013995660199 0.176022091292245 0.171641605903321 0.176518388486545 0.177543668663224 0.17758187091091 0.184819440996669 0.168483960422497 0.174066324746915 0.174252770073773 0.168349514118485 0.173715755523082 0.176486903133661 0.176322424564536 0.169457237809905 0.173866354144398 0.173288767862653 0.177015756089124 0.173164674391427 1 1 + 20062499 20062949 20062714.455 20060201 20063306 + gene protein_coding_gene FALSE TRUE AT1G53720.1 ATCYP59/CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis? trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles. similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to Os06g0670500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058329.1); similar to putative multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAD45454.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0838843291970448 -0.884678861602031 0.395458245166543 1 -0.228371702006199 9.33950647406008 -0.0838843291970448 0.0812122658279607
AT2G18450_at 1.74579425545358 1.68908308721096 1.67907938513169 1.59143076504674 1.64223469069165 1.74597059966333 1.50128720614020 1.73615460675493 1.83815250343765 2.16986347001953 1.94316059309637 1.36432827584400 2.03064131641901 1.8286289820806 1.78685393406355 1.53706771718431 1.94850558799629 2.07190311062886 1.88022095851386 0.197597910230144 0.191826055669150 0.198380746919843 0.199750359759600 0.199604460357271 0.204839586136585 0.196833151464932 0.201641326812784 0.203880523988174 0.197344307870270 0.199820679577579 0.196369149573725 0.196814037401464 0.191826055669150 0.198968817957540 0.19723463899038 0.205739494418464 0.195514391540433 0.203700043271515 2 2|0 -|/ 8004609 8005646 8005135.3 8004474 8007886 - gene protein_coding_gene FALSE TRUE AT2G18450.1 SDH1-2 (Succinate dehydrogenase 1-2) Nuclear encoded mitochondrial flavoprotein subunit of succinate dehydrogenase complex . Identical to Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial precursor (EC 1.3.5.1) (FP) (Flavoprotein subunit 2 of complex II) (SDH1-2) [Arabidopsis Thaliana] (GB:Q9ZPX5); similar to SDH1-1 (Succinate dehydrogenase 1-1) [Arabidopsis thaliana] (TAIR:AT5G66760.1); similar to Succinate dehydrogenase, flavoprotein subunit (ISS) [Ostreococcus tauri] (GB:CAL56758.1); similar to succinate dehydrogenase flavoprotein subunit precursor [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_572631.1); similar to hypothetical protein UM01172.1 [Ustilago maydis 521] (GB:XP_757319.1); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; (InterPro:IPR004112); contains InterPro domain Succinate dehydrogenase, flavoprotein subunit; (InterPro:IPR011281); contains InterPro domain Fumarate reductase/succinate dehydrogenase, FAD-binding site; (InterPro:IPR003952); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.0761301915413923 -0.884288299811161 0.395659868807695 1 -0.228696415762742 3.55469524133887 -0.0761301915413923 0.0479652686497648
AT3G42590_at 1.10758709008555 1.41591319763874 1.68697443727956 1.50797998405228 1.35688868439578 1.88182472165694 1.52402120138099 1.32650854939225 1.76754645484441 1.78884140822908 1.7858400747432 1.30304122172886 1.59513006048996 1.24576949108108 1.56970408238799 1.55762419232736 2.00288210033482 2.10345524650861 1.60743966972641 0.217012241257126 0.219041888542178 0.229302508342598 0.223206652690177 0.220276632405205 0.22113056882041 0.218151366626714 0.217012241257126 0.225975179574566 0.219947196620939 0.220310977880991 0.217012241257126 0.230293314118108 0.221305275175947 0.222020066269248 0.228442559324361 0.239261285187855 0.223906604487003 0.217012241257126 3 3 + 14707394 14707759 14707529.909 14707244 14707936 + gene protein_coding_gene FALSE TRUE AT3G42590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12110.1); similar to hypothetical protein 40.t00047 [Brassica oleracea] (GB:ABD65162.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050) 0.0945322058276791 0.884269478349757 0.395669586991942 1 -0.228712060860519 3.15931555971870 0.0945322058276791 0.115009517027569
AT3G19530_at 2.33019391867512 2.66017717228770 3.17758913211875 2.95994133654810 2.52637506684259 2.54562962844788 2.68662109557093 2.85650093513320 2.63485800331465 2.77727259571076 2.676693311715 2.47407640528365 2.90658845476386 2.98719833287774 2.42232545480786 2.65973715513948 2.62392145783308 2.80522869796962 2.68614300646173 0.179415844474242 0.172646107469522 0.176801960109192 0.170732106414436 0.179094223726225 0.177994482786100 0.175289156831985 0.17022439632938 0.170701434056422 0.175568608382232 0.173605803816394 0.173728935390754 0.182826081000018 0.170207231590927 0.188618328185228 0.173171439291237 0.173428530230199 0.176192616542720 0.172472315507082 3 3 - 6775283 6775507 6775395.182 6775271 6775555 - gene protein_coding_gene FALSE TRUE AT3G19530.1 similar to homeobox protein (HAT 3.1) [Arabidopsis thaliana] (TAIR:AT3G19510.1) 0.0820285671045 0.884116892721723 0.395748378414924 1 -0.228838885184428 5.41482638268362 0.0820285671045 0.0745320156155462
AT4G13390_at 0.77015009344413 0.781288356497365 1.24713435529638 1.18077186312243 0.643521250833086 1.01845224208623 0.716537474356641 1.08713229131452 1.33594440329638 0.950186095897538 1.28409672366852 0.959188435998773 1.2272361836948 1.02678099385659 1.06008148958862 1.02779906855462 1.14796951572096 1.08181370133613 1.04881968653369 0.183133022989966 0.181864926502325 0.181593059121739 0.183669874626395 0.1812750351453 0.182032313523846 0.181908782377554 0.179112739958485 0.191086602532761 0.189407807943862 0.184167812669906 0.18201840613963 0.188978311746201 0.183060035590448 0.182501686935403 0.187281892498049 0.188575448671091 0.194258062754715 0.185082435292037 4 4 + 7784665 7785116 7784921.091 7783814 7785322 + gene protein_coding_gene FALSE TRUE AT4G13390.1 proline-rich extensin-like family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT5G49080.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT5G06640.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT4G08400.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) 0.0869567880372717 0.884028102178139 0.395794232627261 1 -0.228912676443158 2.03738390384964 0.0869567880372717 0.0919703415458492
AT1G12850_at 7.65584059305905 7.92187092855806 7.04429401102040 7.47364566172135 8.07744016940794 6.99177393646968 7.8653442169839 7.89421472069563 8.02640429652608 7.03989666085271 7.91375454496565 8.06248421867825 7.54793070494055 7.96938156599505 7.84338892948919 7.52850591877348 6.74760167412534 7.5774719850515 7.36064756786808 0.181153708229124 0.180493742280628 0.198699866594308 0.189872592785616 0.180865826939208 0.197878853535041 0.181658333750389 0.177401613360843 0.19566246874166 0.188703838921770 0.172018852590997 0.175593363823277 0.184806356677396 0.176023994242780 0.173164501425918 0.172736728109854 0.203057668065642 0.176876124197066 0.176551756484972 1 1 - 4380021 4380505 4380242.182 4379705 4381610 - gene protein_coding_gene FALSE TRUE AT1G12850.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G26780.1); similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Overexpression vector pFC12850OE] (GB:ABK41845.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.132181867916281 -0.883966878194257 0.395825852742331 1 -0.228963554235840 15.1777852553235 -0.132181867916281 0.207277277739472
AT1G64030_at 1.64587655498051 1.26051610679074 1.65487648752203 1.65699615666333 1.24510059866034 1.42144089075175 1.39425574675933 1.41363559334736 1.61853075371207 1.59633715570643 1.83272193118994 1.53035035931473 1.36589894390628 1.58630514851784 1.52080626572147 1.55172601802839 1.99843730915154 1.19195387081200 1.20995374279752 0.212712908841384 0.209538928056934 0.214576516052853 0.220673837117585 0.217528623822578 0.210827302925348 0.213222390539695 0.213163846233140 0.224885991821944 0.222710489860486 0.214482949964651 0.216480063162811 0.209538928056934 0.213963234995480 0.212984697767311 0.209720193874161 0.218445095107793 0.211050715907009 0.222717180214539 1 1 - 23756547 23757107 23756830 23756536 23758011 - gene protein_coding_gene FALSE TRUE AT1G64030.1 serpin family protein / serine protease inhibitor family protein similar to serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G14540.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) 0.0816834815107396 0.883516434576595 0.396058545220091 1 -0.229337785052870 2.98519503271890 0.0816834815107396 0.073416520382561
AT4G35930_at 0.909444444622608 1.05387710504808 1.31753138502427 1.02418574386440 1.09727087791665 1.19943088692353 1.17016916124329 1.4354128028367 1.48931418872721 1.25756265138788 1.64316896995727 1.31304782721094 1.44797638504553 1.19540219432661 1.53433458820167 0.834434056839086 1.14741373005733 1.95186864214841 0.96333411243817 0.228844463731663 0.234500648127428 0.236926348965257 0.232124495233043 0.228871198837018 0.246186106998581 0.227253461802830 0.227253461802830 0.232863232241569 0.229605952984771 0.231302241999995 0.232795509512772 0.233858867594340 0.236297346614619 0.229352018749532 0.230476335487310 0.242977071525444 0.235494001577100 0.231305965864747 4 4 + 17019778 17020675 17020276.3 17018978 17021063 + gene protein_coding_gene FALSE TRUE AT4G35930.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G61340.1); similar to At1g61340 [Medicago truncatula] (GB:ABD32592.1); similar to Os10g0438500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064681.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0820488300167417 0.883085988575194 0.396280995402383 1 -0.229695249216840 2.46101169263883 0.0820488300167417 0.0749754843171235
AT1G32670_at 1.01262260591510 1.38702808625534 1.34310873142293 1.31981510544746 1.42769124803730 1.28374057759571 1.07939774171519 1.18666463126250 1.55376972363839 1.74240942409996 1.17877014647219 1.36553038348213 1.53269943103614 1.08433702572267 1.22214071762865 1.05490359618696 1.24459231266993 1.17784908989911 1.42071689050330 0.167562226496046 0.167722154834639 0.172834750558574 0.17147699917766 0.167843285123315 0.165913583363149 0.171159011423949 0.163700419154393 0.163700419154393 0.163700419154393 0.163700419154393 0.166479073368211 0.168585188799512 0.165742382385668 0.163781567827056 0.169503074505336 0.167371144547553 0.171687568930844 0.176675323803582 1 1 + 11815652 11815931 11815781.636 11815644 11815956 + gene protein_coding_gene FALSE TRUE AT1G32670.1 unknown protein -0.081267596093924 -0.883024081771035 0.396312995306561 1 -0.229746647499553 2.65745934960700 -0.081267596093924 0.0719686968100608
AT4G17030_at 3.80523161360385 4.12914173292149 3.33683639123237 3.40918310791634 3.20990307391275 3.24203440318448 3.82153054635453 3.75125123756387 5.03176791254507 2.99824308490107 4.91217264734639 6.87977598492201 3.95212280379447 3.78247695914207 5.21578957332995 3.68717120087425 2.38246728707371 3.64863568691200 3.63007060084462 0.27777519200801 0.275534124046541 0.271249248377580 0.289228943254050 0.275524237291872 0.278818976129287 0.281790189335418 0.279476291410026 0.295618471300727 0.272521291421056 0.275743872002413 0.292956316047977 0.271249248377580 0.281826601065401 0.280288180609857 0.272329507472705 0.297057945075550 0.272065988248086 0.272654768707817 4 4 - 9581838 9582379 9582159.818 9581605 9583309 - gene protein_coding_gene FALSE TRUE AT4G17030.1 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) EXPANSIN-RELATED. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like B1 precursor (AtEXLB1) (AtEXPR1) (At-EXPR1) (Ath- ExpBeta-3.1) (EXLB1) [Arabidopsis Thaliana] (GB:O23547); similar to ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) [Arabidopsis thaliana] (TAIR:AT4G38400.1); similar to Expansin-like B1 precursor (OsEXLB1) (Expensin-related 1) (OsEXPR1) (OsaEXPb3.1) (GB:Q850K7); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) -0.0782084433610064 -0.883020275246978 0.396314962974051 1 -0.229749807775250 7.68527420534685 -0.0782084433610064 0.0589716406137937
AT1G56530_at 2.64351677301773 2.35426108728644 2.99638890640765 2.60848622621665 2.71199322062076 2.66417463302357 3.11049448995591 2.68793333135971 3.49686423597111 3.23028476442865 3.31519039150745 2.75998571830050 3.15588200161219 3.17790632469723 2.83435381300498 3.14552189934271 3.23347911650895 3.38542052503445 3.34841010529935 0.137814984824154 0.134110770284017 0.141354324821324 0.13747200298127 0.139844158439309 0.136206594765224 0.134110770284017 0.137547354709955 0.139091631372625 0.138971205224719 0.135251354829199 0.136010721494215 0.140970320980170 0.151639202512925 0.136007309259427 0.145432019395974 0.141957980089735 0.134110770284017 0.140144664305475 1 1 + 21182932 21182939 21182935.5 21182902 21184553 + gene protein_coding_gene FALSE TRUE AT1G56530.1 hydroxyproline-rich glycoprotein family protein similar to actin binding [Arabidopsis thaliana] (TAIR:AT1G31810.1); similar to hypothetical protein CC1G_06473 [Coprinopsis cinerea okayama7#130] (GB:EAU86712.1); contains domain PRICHEXTENSN (PR01217) -0.0931714509932191 -0.882965948455912 0.396343046300086 1 -0.229794910025386 5.96439967131143 -0.0931714509932191 0.111480236333057
AT4G16566_at 5.57363894299117 5.7611382084906 5.67427901634477 5.91884431839355 6.7552762619272 6.18521112363087 6.0141425954253 6.3903008485579 5.50861463171608 5.10775134313919 5.35966571153729 5.18763716514786 5.19504446562293 5.66346832709162 4.78401130592909 5.52702805670736 4.69100486773017 5.16203397934974 4.97011725282074 0.251580985423037 0.235629964471202 0.252992208269481 0.243317027839206 0.241893118456295 0.249238967436106 0.236862147089663 0.247458012892596 0.259613613757993 0.235629964471202 0.235629964471202 0.235935399358939 0.235629964471202 0.256662911189044 0.244328130519545 0.235928476390099 0.241166532150554 0.245739093143204 0.244370957325763 4 4|0 -|/ 9334898 9335871 9335364.714 9334644 9335990 - gene protein_coding_gene FALSE TRUE AT4G16566.1 histidine triad family protein / HIT family protein similar to Os04g0535400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053421.1); similar to H0502G05.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67111.1); contains InterPro domain Histidine triad (HIT) protein; (InterPro:IPR001310) 0.0996699284360124 0.882794581944622 0.396431640345611 1 -0.229937163407146 11.2299694865276 0.0996699284360124 0.129668354315086
AT3G12070_at 4.30733525988015 4.63447580021046 4.41718807668025 4.59585160303385 4.3896515819058 5.00470835275006 3.33720519676365 3.44032516511591 3.7766000056392 4.14168365901773 3.50432912104216 3.15707435000682 3.82281297253495 3.3402634629849 3.73985354309544 3.58762099420448 4.20968832843894 3.83833074984948 4.45851618552831 0.223694005944903 0.216268728723317 0.224502707908899 0.219926016594504 0.225590321252619 0.223267332537809 0.22135564125212 0.224074120883721 0.218836997090225 0.23135539723085 0.219175517638177 0.220094934326763 0.223868757935047 0.221427565765255 0.224582167630675 0.220856189109181 0.220722446742133 0.216483460365875 0.220639667650822 3 3|0 -|/ 3845437 3846320 3845799 3845221 3847568 - gene protein_coding_gene FALSE TRUE AT3G12070.1|AT3G12070.2 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative similar to geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative [Arabidopsis thaliana] (TAIR:AT5G12210.1); similar to putative Rab geranylgeranyl transferase type II beta subunit [Glycine max] (GB:AAQ62584.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.098205644153922 0.882714558857103 0.396473015819935 1 -0.230003583429543 8.15364094970821 0.098205644153922 0.125732299762057
AT2G22910_at 4.31044291491132 4.82415063000671 4.57975423462032 4.61413185621335 4.79198305948727 3.81249074374117 4.92345197242208 4.67331459950825 4.14305632266628 4.57240444304592 4.09137916811544 4.61586996175211 4.24271350211300 4.28489585785536 4.1963580828331 4.68921065190587 4.43185009854265 4.46545613134636 4.47889293386244 0.217004600579674 0.213257630985684 0.24315914297785 0.223721093624406 0.225888008367614 0.214487097083941 0.219397582280246 0.219476537604715 0.215014858042640 0.212841511185132 0.221419896634558 0.213140014738720 0.212841511185132 0.232600017460183 0.223643599651098 0.212841511185132 0.219197568498711 0.214098421411377 0.213112761759132 2 2|0 +|/ 9759217 9759774 9759543.6 9756949 9759943 + gene protein_coding_gene FALSE TRUE AT2G22910.1 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein [Arabidopsis thaliana] (TAIR:AT4G37670.2); similar to Os07g0585600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060125.1); similar to putative amino-acid N-acetyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAR87160.1); similar to Os03g0431200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050426.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Amino-acid N-acetyltransferase (ArgA); (InterPro:IPR010167); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.127075636873395 -0.882482435817718 0.396593050542477 1 -0.230196218885657 8.9538822921969 -0.127075636873395 0.196327548389267
AT1G32180_at 0.526051676431117 0.876102907658106 0.995399307277002 0.411194683718137 0.828217762400007 0.631009785658453 0.67922017851191 0.860622702825099 0.281160458703065 0.525439264424322 0.303187829154386 0.594315253498331 0.844335515835575 0.973882144044591 0.657880063945858 0.628056536415358 0.746247033283166 0.686603437178598 0.583138508919885 0.188537616636095 0.185496982861103 0.185714279732535 0.186802975538013 0.185496982861103 0.186521594199691 0.186438606273854 0.188281723472514 0.193597634042237 0.193948982441119 0.196117113335784 0.188018727210160 0.192834961059825 0.189929601517440 0.191652467438362 0.185496982861103 0.191760718900757 0.188370652662447 0.192476833011843 1 1 - 11586536 11587059 11586775.545 11586496 11589631 - gene protein_coding_gene FALSE TRUE AT1G32180.1 ATCSLD6 (Cellulose synthase-like D6); cellulose synthase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLD4 (Cellulose synthase-like D4), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38190.1); similar to CSLD3 (CELLULOSE SYNTHASE-LIKE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G03050.1); similar to ATCSLD2 (Cellulose synthase-like D2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16910.1); similar to cellulose synthase-like D7 [Physcomitrella patens] (GB:ABI75157.1); similar to cellulose synthase-like protein D4 [Populus tremuloides] (GB:AAO03579.1); similar to putative cellulose synthase [Oryza sativa (japonica cultivar-group)] (GB:AAL58185.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) 0.098511708863617 0.882426073590547 0.396622200177666 1 -0.230242986515028 1.29725715256927 0.098511708863617 0.126652934138796
AT1G78990_at 1.09172655136753 0.749286046094762 1.41444844640259 0.752527174953892 0.999225337973045 0.99363497438592 1.79178346166832 1.49939491392352 1.29682795621522 1.43397161308622 2.06470254896647 1.50498487704137 1.58938925447336 1.80419452071399 1.75142418689709 1.53599392740264 1.63340031700828 1.51717969213245 0.947673236048617 0.186900241172549 0.193810865721215 0.188529092360142 0.194060331694235 0.191374599934593 0.188192023994918 0.191889768579244 0.19750765819977 0.187261851738378 0.191506164387718 0.186771359521357 0.192431181258087 0.189197606513531 0.197355881549774 0.192217191606498 0.193888475393110 0.196293274710881 0.200396273827432 0.186771359521357 1 1 - 29718448 29718937 29718696.182 29718424 29719862 - gene protein_coding_gene FALSE TRUE AT1G78990.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G16410.1); similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT1G32910.1); similar to putative anthranilate N-hydroxycinnamoyl/benzoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD69322.1); similar to Os04g0609500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053822.1); similar to Os04g0609300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053821.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.102956151980716 0.882123806329384 0.396778553137872 1 -0.230493754886431 2.61216149702760 0.102956151980716 0.138544021462272
AT3G07840_at 2.50327039441835 2.42190475965323 2.44274331016274 2.1120463561387 1.96866045815893 2.40570789678422 2.14244280514081 2.15174453338802 2.49578212923838 2.52705889855212 2.45199491630503 2.13345142132574 2.45498347065988 2.55633032227661 2.62737371092106 2.59189829836154 2.56405729560991 2.66566839944544 2.80439622067727 0.195654739701681 0.199284498753726 0.198100899906325 0.198038785563716 0.204893015231133 0.195746125541855 0.215246364441447 0.203462373177780 0.198076356099607 0.195654739701681 0.203759978715080 0.203676365353556 0.203742320264914 0.197668729087340 0.197043811960863 0.198046648580551 0.206668979521807 0.207283550465432 0.201960920017132 3 3 - 2501936 2502654 2502337.455 2501899 2503571 - gene protein_coding_gene FALSE TRUE AT3G07840.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase 3 (PGA3) / pectinase [Arabidopsis thaliana] (TAIR:AT3G07820.1); similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G07830.1); similar to Polygalacturonase precursor (PG) (Pectinase) (GB:P35337); similar to putative pollen polygalacturonase [Brassica oleracea] (GB:AAM74219.1); similar to polygalacturonase [Brassica napus] (GB:AAP42648.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.0879552356491962 -0.881903443168005 0.396892566567205 1 -0.230676527234930 4.82596447032349 -0.0879552356491962 0.095897555722273
AT1G26500_at 3.04122322964306 2.8495068167721 3.34025837778777 3.20462135611043 3.08486346452765 3.38109061919383 3.37093645706204 3.54445157628507 3.41486861699790 3.19141688501438 3.12810906366337 3.52795679510631 3.73218425212744 3.75938063545035 3.59652676807809 3.71989950965223 3.26192119430188 3.46120396319757 3.63051006721298 0.200090635010841 0.194013701420521 0.192635776038615 0.199850134335667 0.192635776038615 0.198996016072776 0.192635776038615 0.201001191212081 0.197809789526882 0.204230181585189 0.193130997778761 0.193812150667065 0.203091405482327 0.194806661130226 0.192635776038615 0.197967319255238 0.193793867509295 0.196334394571891 0.200517295463074 1 1 + 9159302 9159786 9159511.727 9158367 9159884 + gene protein_coding_gene FALSE TRUE AT1G26500.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62470.1); similar to putative disease resistance protein RPH8A [Oryza sativa (japonica cultivar-group)] (GB:BAC15497.1); similar to Os07g0599100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060187.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0811557587098758 0.881774188420098 0.396959452032119 1 -0.230783714772259 6.6949504683922 0.0811557587098758 0.071981298140837
AT2G40690_at 4.07985653924748 3.84210419566444 3.62324044508737 3.66870749417543 3.56847713797696 4.0598843602889 4.07939913274997 4.2298249810502 3.57163132741407 4.05446617424208 3.70945966952249 4.54716746348039 4.02199811294709 3.44324610422294 4.50524480008062 4.25279459513643 3.7083333290693 4.00617090496843 3.99540977363217 0.215507752749611 0.224995996523315 0.219445126298485 0.216939205776413 0.216123763229369 0.221758723372277 0.219992852824117 0.227895647714373 0.22415530300389 0.216980636127023 0.214884463352656 0.214884463352656 0.220149546354280 0.228538302287800 0.218897696756272 0.21797493362017 0.224211248518714 0.220063234266657 0.219176918467592 2 2|0 +|/ 16982095 16983161 16982639.5 16981070 16983536 + gene protein_coding_gene FALSE TRUE AT2G40690.1 GLY1 (SUPPRESSOR OF FATTY ACID DESATURASE DEFICIENCY 1); glycerol-3-phosphate dehydrogenase (NAD+) Encodes a putative dihydroxyacetone phosphate (DHAP) reductase involved in glycerol-3-phosphate supply within the chloroplast for synthesis of glycerolipids. Mutants have reduced levels of hexadecatrienoic acid, which is rescued by exogenous glycerol-3-phosphate. This gene appears to be involved in the flux of fatty acids in the prokaryotic glyerolipid biosynthesis pathway. similar to glycerol-3-phosphate dehydrogenase (NAD+) / GPDH [Arabidopsis thaliana] (TAIR:AT5G40610.1); similar to Os07g0229800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059228.1); similar to Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase (ISS) [Ostreococcus tauri] (GB:CAL51808.1); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase; (InterPro:IPR006168); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; (InterPro:IPR011128); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; (InterPro:IPR006109) -0.0886263693984168 -0.881047226854664 0.397335777614586 1 -0.231386314089668 7.84300560120904 -0.0886263693984168 0.0983069950938867
AT3G13820_at 0.702205224792319 0.668186330405294 0.719311452583742 1.12564204848848 0.48472691609978 0.517768131042818 0.381224309752999 0.618581362413679 0.500484203265961 1.16995957818919 0.540690430104351 0.259759947545442 0.762679758636877 0.533018994561567 -0.0071005120686154 0.600761472649039 0.0968558497700098 0.585680904637455 0.454363194589379 0.188056723967899 0.189803444252304 0.192049194427864 0.194897273544623 0.189227758979736 0.187837808195432 0.185164886146285 0.191301173117200 0.210656350103637 0.195895747330433 0.197372782743950 0.185119563747675 0.188468884057734 0.194826772456496 0.193386597376061 0.190790858252179 0.198697573349978 0.195610035671321 0.188700800382216 3 3 + 4550307 4550769 4550540.091 4549623 4550870 + gene protein_coding_gene FALSE TRUE AT3G13820.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G13680.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABD33336.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0837064030363476 -0.880937176336009 0.397392768790725 1 -0.231477501025974 1.21711189581957 -0.0837064030363476 0.0818480744972013
AT3G17750_at 7.17696483760049 7.28709086780432 7.14847074434692 6.98699900433562 7.85058265004102 7.37637673773442 7.97269149163085 7.39445703550354 7.20906027275052 7.10366810808181 7.3982528620916 7.27073821232859 7.31371355367872 7.03415755438523 7.01083784366991 7.59635260431094 7.28622391433875 6.98711762696137 7.65316809084086 0.16833564841346 0.172435906235819 0.173305705165149 0.172876603646896 0.169612694827265 0.174040941174475 0.175160069081655 0.172862544451029 0.180549623051310 0.178553516918242 0.178600765333312 0.172823763282466 0.170241080966257 0.177956037713096 0.1836882758252 0.17162225544995 0.185501587223178 0.177873976811740 0.171688369041839 3 3|0 +|/ 6077614 6078399 6078014.5 6073775 6078728 + gene protein_coding_gene FALSE TRUE AT3G17750.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G73460.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G73450.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT77851.1); similar to Os03g0719500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051095.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.100992496553694 -0.880922725783633 0.3974002526265 1 -0.231489473907715 14.6787740521388 -0.100992496553694 0.133759859323199
AT3G07420_at 3.03761539392824 2.94536629963551 2.62893601128803 2.31589612062925 2.35340801827841 2.13930315431253 2.81536332304844 2.86243939029400 3.24569281174124 2.99614714537461 3.50248686266832 4.56831752738494 3.09600703025566 3.76482877474831 4.5660376861763 3.89940188079025 3.26949003135975 3.86593011459347 3.05986615249794 0.205452712723016 0.206360409905567 0.214322407617955 0.208563494581467 0.215664928166498 0.210667810166609 0.208386220325759 0.213129401627433 0.228164948617232 0.212894043312405 0.207808550407708 0.222669348670914 0.210114197098119 0.209715950148261 0.228457057640268 0.221663547865152 0.214227626541549 0.215419735783696 0.206119822097500 3 3 - 2374211 2374988 2374597.727 2373983 2376748 - gene protein_coding_gene FALSE TRUE AT3G07420.1 NS2 (asparaginyl-tRNA synthetase 2) Encodes an asparaginyl-tRNA synthetase. Identical to Asparaginyl-tRNA synthetase, cytoplasmic 2 (EC 6.1.1.22) (Asparagine-- tRNA ligase 2) (AsnRS 2) (SYNC2) [Arabidopsis Thaliana] (GB:Q9SW95;GB:O48594;GB:Q8GZ48;GB:Q9SRS4); similar to EMB2755 (EMBRYO DEFECTIVE 2755), ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G56680.1); similar to tRNA synthetase, class II (D, K and N); Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE83310.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) 0.0800917548465179 0.880838129895357 0.397444066168652 1 -0.231559561733127 6.09585655977766 0.0800917548465179 0.0680351194229642
AT4G33925_at 2.93256565866530 3.05246538049185 2.92803811016900 2.74477520528041 2.62876438224563 2.91214451406280 2.70855936336480 2.71394942900808 2.3835130656098 3.04423357215040 2.43667522642062 2.38966464200674 2.51563991983044 2.88120199999257 2.57548774695994 2.91963180557033 2.74089515329515 2.69424346569086 2.8314367836625 0.221119202196875 0.215871764021802 0.224588611609875 0.218405388097955 0.215871764021802 0.232740361402894 0.221010103770098 0.219230096294077 0.226031459652433 0.225383875936382 0.222115691406155 0.220405966915409 0.215871764021802 0.220297936909067 0.215871764021802 0.215871764021802 0.227334990389908 0.223654586679034 0.222227825888635 4 4|0 +|/ 16263301 16264040 16263771.2 16263242 16264229 + gene protein_coding_gene FALSE TRUE AT4G33925.1 similar to Os07g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060165.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51847.1) -0.0786677752232224 -0.88071639693549 0.39750711942431 1 -0.231660407562128 5.52627832313352 -0.0786677752232224 0.06198512414921
AT4G39730_at 10.9473092842672 11.0699870853720 11.1435773261474 11.2936591348053 10.5751860427815 10.622053537966 11.8819061685215 12.2077217016777 10.7815893955611 11.3601341193158 11.3829867731090 11.4993810606829 11.5333471012867 11.5493776277777 11.4805051227590 11.3866599333669 11.3638404786289 11.5201699740296 10.8748993211344 0.0590718349441692 0.0555073157142313 0.055172925847604 0.055172925847604 0.0570135338472897 0.0583857276813012 0.0623962100910646 0.0564874569589012 0.0620270256536714 0.0571901222673105 0.0551894620920647 0.0556747261518299 0.0554919758748828 0.0591192012899775 0.0576073868551666 0.055172925847604 0.0599071019087737 0.0571442572923235 0.0609621011591145 4 0|4 /|+ 18433126 18433519 18433329 18432893 18433689 + gene protein_coding_gene FALSE TRUE AT4G39730.1 lipid-associated family protein similar to lipid-associated family protein [Arabidopsis thaliana] (TAIR:AT2G22170.1); similar to dehydration stress-induced protein [Brassica napus] (GB:AAK01359.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976) -0.0795597429582802 -0.880060872790973 0.397846775598246 1 -0.232203250570605 22.4527122623384 -0.0795597429582802 0.0661074967605995
AT3G54650_at 3.63075104724317 4.15681532596676 3.74116418948582 4.23912934746245 3.66043192074737 3.89922162249435 4.11489494406360 5.05166609350286 3.82825236548401 3.71903589658968 3.69313193691608 4.13777437489841 3.63353772967763 4.29763625599291 4.15314156185408 4.38047857951300 3.83114089717477 3.6233761506721 4.09275077633409 0.232310993157969 0.233307767979827 0.240729442369481 0.241371884567927 0.230884256974845 0.235539178805111 0.231336226781513 0.234266008222631 0.229389940814345 0.232539078706598 0.229025166999271 0.227737935576805 0.228105687674508 0.228250002304739 0.244002962439832 0.227737935576805 0.237596975875154 0.240672752446531 0.228337178862888 3 3|0 -|/ 20237460 20238308 20237901.333 20236751 20239899 - gene protein_coding_gene FALSE TRUE AT3G54650.1 F-box family protein (FBL17) similar to F-box family protein (FBL15) [Arabidopsis thaliana] (TAIR:AT4G33210.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97769.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.132390454805907 -0.880036716432867 0.397859295897315 1 -0.232223247962432 7.98615441069078 -0.132390454805907 0.20905072380811
AT3G20015_at 3.29793437888313 3.42888082519119 2.39741256453247 2.97882096481025 2.90030228793153 3.25553014167271 2.75347718619951 2.99877766520249 2.98909540034841 2.71948542044805 2.84257130420207 3.15929338814293 2.51209540461154 2.78722635919784 3.17165259100503 2.80305174402069 2.62684309418155 2.63263749274008 2.62279678051054 0.21802857383275 0.230863062999439 0.215785272657027 0.227942921908537 0.223633733621941 0.221526329457819 0.222778798990222 0.219999031781038 0.232394249272415 0.214753934916129 0.211957154189007 0.214617153843377 0.219797035068388 0.212920968786884 0.223646791241991 0.214322809600216 0.223347308576531 0.217648814818390 0.223599236612604 3 3 - 6978781 6979292 6979001.455 6978483 6980374 - gene protein_coding_gene FALSE TRUE AT3G20015.1 pepsin A similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G18490.1); similar to H0402C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86229.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.098477734485977 -0.879826923625344 0.39796804342908 1 -0.232396901256164 5.79841564648543 -0.098477734485977 0.127350109064639
AT1G48880_at 3.57526904238396 3.47169796654181 3.17548953726823 2.81582930405448 3.0702872283465 3.1588950396234 3.16384688117158 3.76627510134584 3.05327069916087 3.07177008764093 3.06522420357228 3.54671452166004 3.23504175756163 3.73106176973 3.22908655876899 3.41406400121538 3.543212461968 3.41914186600993 3.33394953742735 0.237118110297618 0.253863699547762 0.237676306968175 0.242322602202074 0.265738536629495 0.238150119581959 0.245031514817216 0.241927786280112 0.237641697193510 0.238465272221161 0.232704550280755 0.228174195193687 0.234835255439344 0.246585679277977 0.236276851904392 0.235934257348412 0.260991244070188 0.23588409454732 0.237258450868879 1 1 + 18085566 18086194 18085959.75 18084701 18086593 + gene protein_coding_gene FALSE TRUE AT1G48880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06080.2); similar to Os01g0880400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044993.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91480.2); similar to Os05g0426300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055601.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.0971001763599565 -0.879458982455839 0.398158817659459 1 -0.232701374139716 6.55016884624389 -0.0971001763599565 0.123689125300536
AT1G76320_at 6.99271469007189 7.4021813128051 6.76012423486999 7.24522396043866 7.23556046429714 7.34832484362889 6.77835184907286 7.15503722109759 7.27865496819205 6.82265649526778 6.58719432556442 6.75879119685808 6.85473140731127 6.93847660192242 6.91629119921524 7.18523968315375 7.0336832176048 6.88438898898657 7.37369246719266 0.178116274838269 0.174989083822434 0.188202934435770 0.177667923683382 0.190508132210534 0.191173073854558 0.184918208512553 0.184207613027780 0.188315344532771 0.179781042516639 0.181855356995512 0.18096402554352 0.178249931496134 0.178551803311554 0.174989083822434 0.174989083822434 0.184656869448086 0.181092121796834 0.178358544049782 1 1|0 +|/ 28637959 28638750 28638325.8 28636133 28639018 + gene protein_coding_gene FALSE TRUE AT1G76320.1|AT1G76320.2 FRS4 (FAR1-RELATED SEQUENCE 4); zinc ion binding similar to FAR1 (FAR-RED IMPAIRED RESPONSE 1), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G15090.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) -0.0991239792134744 -0.87942045218374 0.398178798904325 1 -0.232733251790658 14.1412819325992 -0.0991239792134744 0.129223561092042
AT4G00720_at 9.12159452558232 9.13160805138975 9.28090109703777 9.14727950451532 9.54841931240733 9.51956749147404 9.4930037031323 9.60257224924314 9.51531167133905 9.27875502405323 9.7487490807784 9.33126487776271 9.69001967538734 9.4924078279836 9.28318613253211 9.41906356216233 9.58045914533253 9.11716071647632 9.25145181486331 0.0877284500960308 0.0871011780956555 0.0902386952724249 0.0912940177126664 0.0889806065656344 0.0905984395637077 0.0873048901925864 0.0910984375905042 0.0922648921902179 0.096025721287276 0.0913963461319082 0.0884898790380738 0.0892790266258612 0.0962478453921793 0.0887193651151867 0.0893281441245453 0.0935986552855789 0.090512828746141 0.092322386950202 4 4|0 -|/ 294145 295226 294672.222 293641 297314 - gene protein_coding_gene FALSE TRUE AT4G00720.1 shaggy-related protein kinase theta / ASK-theta (ASK8) Identical to Shaggy-related protein kinase theta (EC 2.7.11.1) (ASK-theta) (ASK8) [Arabidopsis Thaliana] (GB:Q96287;GB:P93731); similar to ATSK11 (Arabidopsis thaliana SHAGGY-related kinase 11), protein kinase [Arabidopsis thaliana] (TAIR:AT5G26751.1); similar to shaggy-related protein kinase beta / ASK-beta (ASK2) [Arabidopsis thaliana] (TAIR:AT3G61160.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to Shaggy-related protein kinase theta (ASK-theta) (GB:O04160); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95891.1); similar to NSK6; Shaggy-like kinase 6 [Nicotiana tabacum] (GB:CAA69899.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.073064963119226 0.87927418237166 0.398254658608503 1 -0.232854255819096 18.7587657655413 0.073064963119226 0.0303673681850324
AT3G42910_at 1.44917995274742 1.14807971313012 1.60331352851928 1.45286651020751 1.26397152503452 1.64624125011856 1.36214344710234 1.51097549861796 2.15723243406881 1.77454377534951 1.77877352396129 1.67622428582091 1.7139726256769 1.17561049710910 1.81148443400151 1.70999477034461 1.98392694451687 1.46268303861394 1.95109207007672 0.193653738898448 0.192482626363128 0.194717404365788 0.199771106887253 0.195647498168464 0.196146687156269 0.201891420228948 0.193319393369516 0.195142585919030 0.203106496490665 0.193529311170987 0.199535440344806 0.200685041256368 0.202525948269133 0.202028410974216 0.198305914526999 0.210817310619442 0.209301051724810 0.193955851664639 3 3|0 -|/ 14985128 14985617 14985346.2 14985091 14988749 - gene protein_coding_gene FALSE TRUE AT3G42910.1 cysteine-type peptidase similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT5G28250.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.0864343887944322 -0.87914999870531 0.398319071613861 1 -0.232956975191588 3.24211635727004 -0.0864343887944322 0.0918293961611974
AT1G74200_at 2.15276662528085 2.26677154225887 2.55576184287275 2.02266559911635 2.08736821302249 1.53221842851610 1.75277479609007 1.37216004548665 1.50006535149189 1.72232419480061 0.80705205581479 1.09145909404371 0.780284483014995 1.25368055169612 1.00674910440278 0.99343562791771 1.97759385892561 1.53890419597462 1.45334327908118 0.253553659483138 0.247461894134480 0.236858161192427 0.254912827800740 0.236858161192427 0.238153411962604 0.240070835294002 0.236858161192427 0.272735866209791 0.236858161192427 0.23823551100252 0.248725597684767 0.2617164117711 0.242449441731491 0.245388117692709 0.247477401891964 0.24596882937268 0.236858161192427 0.244718874630300 1 1 - 27910794 27911006 27910885.857 27910570 27913019 - gene protein_coding_gene FALSE TRUE AT1G74200.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74170.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE79507.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.107023734190643 -0.87896794348966 0.398413515056915 1 -0.233107540934452 3.33767212654636 -0.107023734190643 0.149894471341615
AT2G23300_at 1.54646150562423 1.59880945544988 1.60015644304833 1.84063052907195 1.48001253315485 1.46732198469458 1.51660380556042 1.5681263424837 2.28164223018225 1.68514575219012 1.90268301625148 1.41500243715520 1.60415701834773 1.31781911603684 1.82112913247488 1.42257660981883 1.9964801555231 1.91394807170898 1.62391873023091 0.190602561256662 0.187168866584252 0.184221948242939 0.189421015816252 0.184963262147293 0.190411102873541 0.184325905589964 0.184629697755617 0.191120389580729 0.181445291508407 0.182505046933048 0.181445291508407 0.187171399694294 0.185223129858346 0.184324765712664 0.182555811686504 0.185915679277652 0.182952950560423 0.186306708931178 2 2 + 9923687 9924171 9923885.545 9921688 9924210 + gene protein_coding_gene FALSE TRUE AT2G23300.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G67280.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G37250.1); similar to Os06g0638500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058153.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os09g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062569.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0749071821617965 -0.87889846558206 0.398449561661621 1 -0.23316499443748 3.34616199931885 -0.0749071821617965 0.0435684546058033
AT2G38440_at 8.77371972429578 8.77126803556537 8.23742900231835 8.2181038552992 8.8914121826059 8.5392744548661 8.11500240509023 8.33692701940818 8.69277509160828 8.36076671372507 8.65731592415228 8.50610855364006 8.2773956571056 8.39990890301627 8.45607115022645 8.30147165412276 8.29779816451348 8.54727705235797 8.64015199876576 0.135827801616985 0.130265427649472 0.134525508706413 0.124764327301031 0.123263153866797 0.130146322454119 0.130588799100889 0.123668496095545 0.134249161174352 0.123783421382472 0.128198209057526 0.123263153866797 0.131786464565563 0.127985945761289 0.125737517548358 0.123263153866797 0.133774023287020 0.131678917627696 0.131521217454506 2 2 + 16107006 16107524 16107192.111 16102407 16108299 + gene protein_coding_gene FALSE TRUE AT2G38440.1 ITB1 (IRREGULAR TRICHOME BRANCH1) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. Identical to Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein DISTORTED3) (Protein IRREGULAR TRICHOME BRANCH1) (SCAR2) [Arabidopsis Thaliana] (GB:Q5XPJ9;GB:O80907); similar to WAVE3 [Arabidopsis thaliana] (TAIR:AT5G01730.1); similar to SCAR-like protein 1 (GB:Q84TX2); similar to Os03g0298700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049845.1); contains InterPro domain Actin-binding WH2; (InterPro:IPR003124) -0.0809103206460053 -0.87875326450759 0.398524902289303 1 -0.233285053278169 16.9828835768102 -0.0809103206460053 0.0721102370969207
AT3G26790_at 2.42171990904994 2.21212567905373 2.62030226544747 2.43514254904414 2.17204843312516 2.25929915581747 2.16604993697925 2.40829190563507 2.12036680205810 2.65560835490892 2.13782371240770 2.02952868701590 1.93025896881524 2.10278888170519 1.61623395923205 2.4227813870434 2.27415011930626 2.66941833429564 2.35272721137677 0.224673153833758 0.222101793363878 0.217532452370022 0.224396984715016 0.218647975575394 0.219749191318547 0.219915917012319 0.223767450425836 0.239336554436525 0.237987989082589 0.223930006051545 0.227486533087566 0.223803544490197 0.217808845014013 0.219039251588034 0.217296776903075 0.242859667937166 0.223239111447378 0.217296776903075 3 3 - 9855262 9856342 9855550.091 9855065 9857226 - gene protein_coding_gene FALSE TRUE AT3G26790.1 FUS3 (FUSCA 3); DNA binding / transcription factor Transcriptional factor with high similarity to the B3 region of the VP1/ABI3-like proteins. Full length FUS3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of FUS3 requires the B3 DNA-binding domain and an activation domain. FUS3 specifies cotyledon identity. Regulator of gene expression during late embryogenesis. Involved in the control foliar organ identity in Arabidopsis by regulating the synthesis of two hormones, abscisic acid and gibberellin. FUS3 together with LEC1 positively regulate the abundance of the ABI3 protein in the seed. similar to ABI3 (ABA INSENSITIVE 3), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G24650.1); similar to Transcriptional factor B3 [Medicago truncatula] (GB:ABD32571.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.0793549366872645 -0.878635533618756 0.398585996629698 1 -0.233382386038821 4.5989260437735 -0.0793549366872645 0.0657852963100468
AT3G46860_at 1.21176971506081 1.45412143109639 1.25309885885290 1.74906933133962 1.33909548020882 1.4275510795039 1.48941759547194 1.40974336219369 1.30011412735754 1.85986747634794 1.35854093457313 1.21965875063843 1.52697290291482 1.45828347594482 1.41573117374611 1.39215211066398 1.49598558098787 1.36149008153565 1.73282140912937 0.163688906096695 0.164297934633399 0.167213970532219 0.162269643961760 0.162895887930884 0.163532639992080 0.164306543469001 0.165574547488653 0.160374358524445 0.173235873764020 0.162703511101884 0.164196978274211 0.168085158028233 0.163495467858792 0.163084369363794 0.168129211653844 0.175505024423427 0.172373664217 0.169582359220058 3 3 + 17271239 17271560 17271446 17271219 17271584 + gene protein_coding_gene FALSE TRUE AT3G46860.1 serine protease inhibitor, potato inhibitor I-type family protein similar to protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT2G38870.1); similar to Proteinase inhibitor (LUTI) (GB:P82381); similar to Chain A, Solution Structure Of Linum Usitatissinum Trypsin Inhibitor (Luti) (GB:1DWM); contains InterPro domain Proteinase inhibitor I13, potato inhibitor I; (InterPro:IPR000864) -0.0881958998577076 -0.878590258214969 0.398609493206741 1 -0.233419814021168 2.93400146370962 -0.0881958998577076 0.0977250949184775
AT4G28480_at 8.07375456097102 8.47496630366334 8.19919215273087 8.41104791461397 8.40386309111749 8.50258755767947 8.64035440608918 8.59888856536556 8.03511223155743 8.14225049535533 8.43884617562019 8.32907718554333 8.47345076880625 8.31938205364525 8.16756105648902 8.3155572916274 8.07392254817318 8.19237296421232 7.98661338897326 0.141967097307801 0.137277708646937 0.147007976748734 0.156467777810176 0.142558196375908 0.145744165922019 0.137231835746531 0.142433181304162 0.145763175849474 0.143923699377963 0.136180591482864 0.143599936242707 0.144488088318253 0.141836726490697 0.143040784790251 0.137072335458907 0.143355142676032 0.142035990843505 0.145302914807835 4 4 + 14074246 14074979 14074745.909 14073048 14075242 + gene protein_coding_gene FALSE TRUE AT4G28480.1|AT4G28480.2 DNAJ heat shock family protein|heat shock protein binding / unfolded protein binding similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE89016.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)|similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE89016.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.083147135116228 0.878470868270431 0.398671457577979 1 -0.233518502610974 16.5847967994338 0.083147135116228 0.0806738566354627
AT3G32040_at 2.35484981619918 2.52775361506950 2.88171907830221 2.77265292246888 2.28163504929235 2.5155901958509 2.26764901636191 2.29283273529026 2.96057816580737 2.31857521910192 2.46703761309559 2.44845916349351 2.66756849077125 2.49655613386075 2.39536510079777 2.69500934367409 3.01612513046076 2.80992557254858 2.89021268889913 0.18588320565463 0.180531357808693 0.185568008567544 0.184733787712907 0.180531357808693 0.180531357808693 0.184351917385912 0.186920753490238 0.180995066636074 0.18956007223445 0.198216585435389 0.180531357808693 0.187360703596019 0.180712949633497 0.180531357808693 0.180850011768441 0.180531357808693 0.184581911433203 0.181748641904368 3 3 - 13051569 13052026 13051867.364 13051417 13052753 - gene protein_coding_gene FALSE TRUE AT3G32040.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative [Arabidopsis thaliana] (TAIR:AT3G29430.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.0767559048666805 0.878387344678946 0.398714810954072 1 -0.233587536978829 5.16064922519969 0.0767559048666805 0.0539421076052447
AT4G13080_at 1.40492359505289 1.96676461195010 2.10444446272038 2.15496419696283 1.988114683502 1.78640762821056 1.73064223535305 1.73050282259138 1.66841672951825 2.03114000008245 1.93541398740935 1.72185101979029 1.35414464492544 1.65387450811473 1.60157558207465 1.71163079769319 2.03313559250908 2.37164733527062 2.05468264522624 0.192968491596270 0.189116896510128 0.191621548643207 0.184290739267471 0.187433810581841 0.191509504278327 0.186794137615570 0.191441301123719 0.199083442223853 0.204051082013207 0.187832617475822 0.18422494649481 0.195948719402926 0.181343595889861 0.183138041941070 0.185594003614564 0.187018704597097 0.193551816971741 0.189757508703608 4 0|4 /|- 7626632 7627560 7626965 7626609 7628364 - gene protein_coding_gene FALSE TRUE AT4G13080.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Putative xyloglucan endotransglucosylase/hydrolase protein 1 precursor (EC 2.4.1.207) (At-XTH1) (XTH-1) (XTH1) [Arabidopsis Thaliana] (GB:Q9SV61); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT4G13090.1); similar to Xyloglucan endotransglucosylase/hydrolase precursor (BobXET16A) (GB:Q6YDN9); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.0900519092382638 0.878093317068218 0.398867453393932 1 -0.233830513482583 3.7163400170841 0.0900519092382638 0.103674524067163
AT1G31780_at 7.32785234244949 8.02304961978327 7.0896686462066 7.45725793347153 7.77922236590668 7.35442833832119 7.41468597038292 7.6869473037034 7.02448843145162 7.37284426279205 7.77104426079504 7.684122999842 7.45812356212531 7.07503466073628 7.46919841543086 7.14603617862213 4.96559545656386 6.67291102241221 6.78429067638194 0.221909988020927 0.218991172753974 0.212268976054975 0.214377348420829 0.218166818980824 0.217017694496351 0.225026285264839 0.222787906606599 0.228436079519632 0.218687706123254 0.221409983411099 0.225560003476421 0.215795318778471 0.218049365910712 0.212324596870065 0.212533403221711 0.267748724226148 0.223099902106435 0.218551601079427 1 1 + 11393945 11394524 11394241.091 11391210 11394729 + gene protein_coding_gene FALSE TRUE AT1G31780.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN52749.1); contains InterPro domain Conserved oligomeric complex COG6; (InterPro:IPR010490) -0.111636146039589 -0.877718876304639 0.399061899956003 1 -0.234139840275449 14.5620387865820 -0.111636146039589 0.161692459716539
AT1G09370_at 0.121664642470579 0.261896604084408 0.32872019523362 0.404454664920073 0.150277538624579 0.00784136337554445 0.0928072742949494 0.251514044083566 0.411161537722388 0.58458068811415 0.434372971717321 0.305072940646508 0.0314459387560205 0.388298106916258 0.0710142211777454 -0.095820019018649 0.0340822874272942 0.622853059610048 0.249506769568287 0.193863625645509 0.194139263325596 0.193212288607971 0.195864692124243 0.188383770215024 0.188174840017303 0.191728958741744 0.191061431224908 0.193233466756740 0.198191958963193 0.19311264718588 0.188174840017303 0.19469955783078 0.194661516830053 0.193963968264447 0.188824816863126 0.1952876157512 0.191987396444868 0.193164593799906 1 1 + 3025024 3025369 3025218.727 3024898 3025437 + gene protein_coding_gene FALSE TRUE AT1G09370.1 enzyme inhibitor/ pectinesterase similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G09360.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.075157630379564 -0.876872103283581 0.399501868344547 1 -0.234838945079197 0.521896009322086 -0.075157630379564 0.0460717590524611
AT2G34870_at 1.29219949596838 0.900968690260106 1.64929399786805 1.93652942129341 1.19783321597009 1.68062665162127 1.26033431074134 1.52853169517849 1.54020101647053 1.49264371511754 1.31496527555116 1.56269320176805 1.43436931175762 1.12557728286023 1.21198928254358 1.12519795933187 1.42556381940363 1.73236720569881 1.59032234058955 0.223062975608714 0.23048808576599 0.232096568622424 0.224512306100512 0.228440479353017 0.229913361484703 0.224251133436192 0.228014908670859 0.240393576168889 0.225979840943442 0.227611574292016 0.223136935917563 0.223062975608714 0.225910936477821 0.228193966664388 0.223062975608714 0.234835713570392 0.226527532888193 0.228701568229984 2 2 + 14717901 14718124 14718004.091 14717856 14718532 + gene protein_coding_gene FALSE TRUE AT2G34870.1 MEE26 (maternal effect embryo arrest 26) similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G02670.1); similar to proline-rich protein [Brassica napus] (GB:AAT75332.1) 0.0980485001448118 0.876360519343178 0.39976783988115 1 -0.235261033719095 2.88461273890776 0.0980485001448118 0.127237559853823
AT1G48030_at 11.3353907630606 11.3509394730658 11.4879961032271 11.4802675961482 11.4400436555245 11.3298439334113 11.7710910752562 11.8953237523294 11.5648338299681 11.9766622589237 11.6383845930989 11.7009541583998 11.6236778419122 11.6187516814912 12.0659299725368 12.2035557029716 11.8224604507852 11.9147830239540 11.9040855095004 0.0635842608859038 0.0636998710917938 0.0642016097501798 0.0631507128267183 0.0632699385676803 0.066722589255295 0.064272587325102 0.0640155631325194 0.0680964097472873 0.062279809052831 0.0632330914331895 0.0628333797040297 0.0640601601600006 0.0627161750683211 0.0628342109519856 0.0625423136094052 0.0645199920186824 0.0649836457462035 0.0627026479185564 1 1 - 17721106 17721663 17721380.273 17720802 17722810 - gene protein_coding_gene FALSE TRUE AT1G48030.1|AT1G48030.2 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) Identical to Dihydrolipoyl dehydrogenase 1, mitochondrial precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 1) (Pyruvate dehydrogenase complex E3 subunit 1) (PDC-E3 1) (E3-1) (Glycine cleavage system L protein 1) (LPD1) [Arabidopsis Thaliana] (GB:Q9M5K3;GB:Q9LNF3); similar to LPD2 (LIPOAMIDE DEHYDROGENASE 2), FAD binding / dihydrolipoyl dehydrogenase/ disulfide oxidoreductase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G17240.3); similar to Dihydrolipoyl dehydrogenase, mitochondrial precursor (Dihydrolipoamide dehydrogenase) (Pyruvate dehydrogenase complex E3 subunit) (PDC-E3) (E3) (Glycine cleavage system L protein) (GB:P31023); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); similar to dihydrolipoamide dehydrogenase precursor [Lycopersicon esculentum] (GB:AAN23154.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.0726400659186219 -0.876198281801032 0.399852212282717 1 -0.235394845666777 23.3307400661401 -0.0726400659186219 0.0288950657925374
AT2G34230_at 2.46670987181929 2.28321246764744 2.34244887190372 2.54315876992725 1.71746627850825 2.23772365568708 1.94274451106815 2.33503501471173 2.37843939612899 2.25184599615039 2.0529818869857 1.85924610575934 1.97087631002187 2.23395602762193 2.43464067773421 1.97184815490929 2.01438063275159 2.43870295745434 2.17264467245083 0.196528412957301 0.192974316770587 0.203797764721096 0.193571428776432 0.193243695268875 0.193490647426746 0.190397793515491 0.196356491564816 0.187440662572689 0.183077649215003 0.187486325586753 0.183191150199639 0.190407335656435 0.182146702868759 0.192517000803012 0.184877842202925 0.189160720570123 0.187495541330677 0.19040451190334 2 2|0 +|/ 14463295 14464022 14463568.5 14461718 14464252 + gene protein_coding_gene FALSE TRUE AT2G34230.1 similar to MEE20 (maternal effect embryo arrest 20) [Arabidopsis thaliana] (TAIR:AT2G34220.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) -0.0961451665301831 -0.875701809775431 0.400110480908781 1 -0.235804198902355 4.42842365469154 -0.0961451665301831 0.122186315957542
AT1G68290_at 1.63674119751614 1.40093336174882 1.70996979803338 1.77881965664806 1.1097171812409 1.80336130282786 1.36912980163691 2.0021596438543 1.96441151217087 1.83187877973436 1.56881705640134 1.40362976925202 1.42986203394353 1.65459200808780 1.58526854688842 1.65696596663573 1.79153870448796 1.73243757177751 1.69084619953123 0.199604873636154 0.205370689546171 0.208407713161458 0.198521661560830 0.199267040477315 0.202665046538407 0.204333052807983 0.217412406261604 0.222639055178009 0.209376706558944 0.201132053409132 0.209307083813265 0.198514502078737 0.203889039291803 0.210405613617988 0.203635338623554 0.203725110502298 0.199645510840479 0.211211471507940 1 1|0 +|/ 25600883 25601893 25601453.429 25600334 25602101 + gene protein_coding_gene FALSE TRUE AT1G68290.1 bifunctional nuclease, putative similar to bifunctional nuclease, putative [Arabidopsis thaliana] (TAIR:AT4G21585.1); similar to bifunctional nuclease [Zinnia elegans] (GB:AAD00694.1); contains InterPro domain Phospholipase C/P1 nuclease; (InterPro:IPR008947); contains InterPro domain S1/P1 nuclease; (InterPro:IPR003154) -0.113965278231346 -0.875644881671327 0.400140102674386 1 -0.235851124782110 3.31732122010318 -0.113965278231346 0.167980248640451
AT1G76940_at 6.6857100618921 6.5425214280927 6.14768717335793 5.91841197257695 6.77877030975568 5.74088645942711 5.84799143299847 6.42110256936094 6.096609507314 5.95000594604884 5.92485449879393 5.91522750743042 6.06522883630268 6.54028825757433 5.76833172614158 5.92058786115947 5.88376238375683 5.70368352138998 5.95928078218291 0.256064339810607 0.257216796228381 0.280802542108679 0.276608987802425 0.255543599857763 0.269704095982255 0.250751815484689 0.250185011004698 0.255250789711614 0.251239863263108 0.248496422354908 0.253305097409432 0.257693231621454 0.268329637176763 0.250391086942466 0.248496422354908 0.265525720925618 0.256684823077999 0.260177374461319 1 1 - 28907509 28908725 28908316.8 28907322 28909205 - gene protein_coding_gene FALSE TRUE AT1G76940.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G21312.1); similar to RNA-binding protein [Medicago truncatula] (GB:CAD48198.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.132306116043284 -0.87534359016201 0.400296900698763 1 -0.236099436007078 12.2439906688914 -0.132306116043284 0.210439691512245
AT4G17930_at 0.918091513773918 0.619356234501887 0.869690435126744 1.00830987065839 1.15735100220632 1.07475834163212 0.504002044945238 0.82480413457051 1.41302061563437 1.27078959070206 0.809976024297785 1.19124610558378 1.09851169128467 0.997168954117157 0.929205724465029 1.11285566313378 1.29530385505297 0.836763770124634 0.853887114867096 0.196122614886808 0.200845247642184 0.197478736073497 0.196277303242762 0.196900465190537 0.199017688221793 0.198988220170628 0.195931657170589 0.203561013171731 0.200655917307600 0.208963455973368 0.194496655176304 0.195338366021800 0.200548140690747 0.205177634383209 0.198970671039068 0.196925695767324 0.196558786183431 0.202484794560754 4 4 + 9964633 9964822 9964726.545 9964631 9964852 + gene protein_coding_gene FALSE TRUE AT4G17930.1 unknown protein 0.0828052317821536 0.874389139363773 0.400793894163936 1 -0.236885568173132 1.97860115413121 0.0828052317821536 0.0808359143331194
AT2G13730_at 0.46913232358905 0.90365693039035 0.57147773760948 0.548194257250175 0.777835938738342 0.937882107500546 0.45385231548567 0.751620400331186 0.276466408138313 0.962683619025023 0.897007196841659 0.698550031619288 0.82645553686759 0.958007093372386 0.782558752277859 0.396908133091379 0.599779792310071 0.802172903742497 0.667090685328483 0.179968789280569 0.182880098322081 0.180332033624964 0.182633827677439 0.189672650225296 0.189675891276127 0.183559870910395 0.183311011488388 0.195511254988361 0.185109934325335 0.182275469523878 0.180854883694354 0.190656482001188 0.181503223995071 0.181904851508919 0.190005043762247 0.197113967040587 0.187970953862355 0.178579514136759 2 2 - 5732640 5733028 5732790 5732639 5733085 - gene protein_coding_gene FALSE TRUE AT2G13730.1 unknown protein 0.087024188505153 0.874235638588837 0.400873863293783 1 -0.237011930157219 1.36700325178482 0.087024188505153 0.0953583588161647
AT2G38590_at 1.22480673998394 1.15629282101746 1.15708240762218 1.42586166257186 1.44366159418746 1.47429674719449 1.12704481735618 1.29267752957897 1.20471346350600 1.30349672017274 1.39015812800465 1.14088512622729 1.46434710247571 1.43302640734416 1.35943675518474 0.938027687876292 1.40082013305805 1.65205255685104 1.59793792106292 0.186712305071379 0.186734322525298 0.195175930017533 0.188172133991872 0.184737187931985 0.192641178754774 0.184315919060953 0.185932954165275 0.189647143869782 0.184804636702269 0.187224382332559 0.185412778742326 0.185860968270755 0.184315919060953 0.187513728755172 0.185777599811314 0.187520783508910 0.191727728491270 0.184824143777674 2 2 + 16150689 16151224 16150976.909 16149975 16151262 + gene protein_coding_gene FALSE TRUE AT2G38590.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G33290.1); similar to F-box protein interaction domain [Medicago truncatula] (GB:ABE93710.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0768241640618601 0.874048976779407 0.400971123044422 1 -0.237165564670469 2.64574567595988 0.0768241640618601 0.056158612309503
AT1G12040_at 1.82237527325187 2.02276035699377 1.95048745029535 1.82587686732864 1.44971025941657 1.70683209598701 1.22248983066991 2.15301995886023 2.43589865123541 2.11571408834408 2.35038389649453 1.82854838992147 2.2395441409521 2.32529048319496 2.13479298456618 1.93744003460070 2.10189177311932 2.44798087885691 2.43729944157818 0.219145285425690 0.224723202436389 0.218663058405532 0.224007432226327 0.224886059005131 0.22273687813115 0.216428265163094 0.228074352910621 0.230123278232952 0.221476818097156 0.231080691372053 0.230486242085503 0.219759740409221 0.224857915873966 0.226353332189125 0.216281369210092 0.246876397670199 0.220475828349375 0.227360564730448 1 1 + 4071880 4072341 4072170 4070122 4072565 + gene protein_coding_gene FALSE TRUE AT1G12040.1 LRX1 (LEUCINE-RICH REPEAT/EXTENSIN 1); protein binding / structural constituent of cell wall encodes a a chimeric leucine-rich repeat/extensin protein that regulates root hair morphogenesis and elongation. Null mutants develop root hairs that frequently abort, swell, or branch. Gene is expressed in root hair cells and protein is specifically localized in the wall of the hair proper. similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.115419003846500 -0.873995606514293 0.400998934487429 1 -0.237209486606493 4.01937974481667 -0.115419003846500 0.171985337924875
AT4G31560_at 6.71845305230664 6.65441105552307 6.45049305083298 6.66547142923947 7.13075916081304 6.99262616447335 7.43604469710806 7.10752464924365 7.15630296594396 6.68711026656143 6.97134021791695 6.96703956031445 6.888253379998 7.10060402490688 7.02612283080802 7.49295077617794 7.00075021895212 6.8948406777543 7.26095487659673 0.144272226900319 0.140104393862242 0.140484269808158 0.145807298735600 0.147709364055212 0.143990562740101 0.143147450181787 0.149587428746174 0.142114750461692 0.147273417463417 0.149552359328259 0.141106696122376 0.158214856329324 0.140573251645784 0.148285320117668 0.143071433641019 0.147025726134036 0.145291776703075 0.141655490780208 4 4 + 15295226 15295995 15295457.182 15295207 15296247 + gene protein_coding_gene FALSE TRUE AT4G31560.1 similar to hypothetical protein MtrDRAFT_AC130653g13v2 [Medicago truncatula] (GB:ABE94458.1) -0.080661285526382 -0.873955828090484 0.40101966403245 1 -0.237242221415606 13.9332364477197 -0.080661285526382 0.0728729114766593
AT1G63490_at 4.27852877302033 4.31689086633758 4.16499816873477 3.85559281093232 4.72721528253745 4.08432253842471 4.54026821393004 3.78805819019987 3.94318356732156 3.34877913963115 4.45139880097773 4.21561900837095 4.38127860994040 4.11819584731819 3.69799554691802 4.50920015394193 3.78856452670849 3.05613479159092 4.00989152066591 0.219194460217057 0.215740419545216 0.220956482999203 0.217725445525166 0.215239250524922 0.217514572510944 0.218591037415372 0.214580611244042 0.224389202979769 0.220889000542767 0.21112084432575 0.209391346342777 0.217804646697342 0.212880307469035 0.224392550327403 0.211454233547674 0.215195022752756 0.216096731736110 0.209406106027558 1 1|0 -|/ 23548606 23549740 23549130.889 23548321 23555695 - gene protein_coding_gene FALSE TRUE AT1G63490.1 transcription factor jumonji (jmjC) domain-containing protein similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G20400.2); similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G08620.1); similar to PREDICTED: similar to Jumonji/ARID domain-containing protein 1A (Retinoblastoma-binding protein 2) (RBBP-2) [Bos taurus] (GB:XP_584665.2); contains InterPro domain PLU-1-like; (InterPro:IPR013637); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198) 0.118554678733322 0.87362661381279 0.401191254162322 1 -0.237513092201255 8.11677593214482 0.118554678733322 0.179538215142994
AT3G63170_at 6.39985608617231 6.60424764873999 5.35531850205892 5.55798991110303 6.43324518008084 5.72855606423025 6.48217327723947 6.364825858066 4.46825891633969 5.94073439751787 6.21120290070189 6.49934964233557 5.62524747056725 5.7540522394534 7.30963537733857 5.82641060037085 6.18353935525261 6.2271362780718 5.52295738374358 0.249686420332685 0.256564130103862 0.266295156666504 0.256786259362857 0.252357714286383 0.259038929928322 0.249942150552746 0.264080220855706 0.267906699610746 0.255604643069254 0.255743160317817 0.248823373026645 0.256235364106419 0.275353490245928 0.254920239884556 0.247685202132811 0.262960413056222 0.247685202132811 0.250346500538565 3 3|0 +|/ 23345904 23346678 23346231 23345327 23347084 + gene protein_coding_gene FALSE TRUE AT3G63170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26310.1); similar to putative chalcone isomerase [Lycopersicon esculentum] (GB:AAQ55182.1); similar to Os07g0571600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060052.1) 0.0999615986457982 0.873475118722371 0.401270232002273 1 -0.237637709822925 11.8733875487340 0.0999615986457982 0.133286784940700
AT1G64260_at 1.12387233620986 1.07696542345623 1.43849400920481 0.957790450773325 1.03961092408496 1.26985400008786 1.35343252395609 0.99840748242116 1.40992711191476 1.24314564024797 1.72205493245675 1.51007715494798 1.39646007788022 1.52252392784960 1.88600883489074 1.06865805101659 1.70526976203627 1.55369553302926 1.5462192662261 0.207674074951992 0.206268406543055 0.203686600772565 0.208449069727750 0.206500913524330 0.211534210676885 0.205543444700272 0.203686600772565 0.210246835730914 0.205358554290672 0.205530822819812 0.203686600772565 0.204986624306506 0.212729432445805 0.208259693626974 0.209239317716825 0.205629812971380 0.208315796854104 0.207700633929023 1 1 + 23853001 23853546 23853288.091 23851419 23853578 + gene protein_coding_gene FALSE TRUE AT1G64260.1 zinc finger protein-related similar to SWIM zinc finger family protein [Arabidopsis thaliana] (TAIR:AT1G64255.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G49920.1); similar to MuDR family transposase, putative [Medicago truncatula] (GB:ABE90055.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Plant MuDR transposase; (InterPro:IPR004332); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527) 0.0920487163303585 0.873471542907386 0.40127209628487 1 -0.237640651011244 2.62998216397081 0.0920487163303585 0.111123576021348
AT2G18370_at 1.11765453509886 1.33495001132113 1.44593678755626 1.71438979547568 1.06954369060752 1.43111788622636 1.50011353204322 1.2407573751139 1.28007201529395 0.975825333572392 1.66050325208329 1.21164135683505 0.901207600597923 1.21117572220767 1.21895302199428 1.21488312913871 1.45212903911971 1.10016859901135 1.30821330738219 0.236895398640238 0.233702463849579 0.242021774638241 0.247833425442202 0.232022710947621 0.250645951132605 0.232022710947621 0.236980508214018 0.243440225824458 0.235390322119491 0.233539202277796 0.233151003740997 0.243676303729108 0.245898295215059 0.247073945680377 0.241716445458560 0.242433737567363 0.260787023918556 0.243349220161606 2 2|0 +|/ 7987786 7988054 7987921.4 7987707 7988840 + gene protein_coding_gene FALSE TRUE AT2G18370.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to LTP6 (Lipid transfer protein 6), lipid binding [Arabidopsis thaliana] (TAIR:AT3G08770.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE82131.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.0875870031397482 0.873291773109782 0.401365828507822 1 -0.237788502387918 2.57399275195020 0.0875870031397482 0.0974784611626533
AT1G13140_at 1.38579073688268 1.39712753448673 1.40299227273641 1.39244194423340 1.05958083363963 1.08649966613136 1.36204707177884 1.32246538566254 1.38968335671673 1.34053689013230 1.49334208662975 1.28402994660282 1.63456063051297 0.941439780157345 1.08130997791764 1.38091790879733 1.41956955011954 1.55887704452787 1.34857514410844 0.203446909062886 0.196754817694139 0.203183259498491 0.207190964526068 0.197168047288303 0.206290798107507 0.199538496433218 0.200853442860502 0.209818692326914 0.220143672203567 0.201763063206487 0.198088588925932 0.202522031654289 0.196754817694139 0.203248314016824 0.196754817694139 0.217712118498179 0.205946746921433 0.199523987102784 1 1 - 4478693 4479074 4478839.909 4478489 4480268 - gene protein_coding_gene FALSE TRUE AT1G13140.1 CYP86C3 (cytochrome P450, family 86, subfamily C, polypeptide 3); oxygen binding member of CYP86C similar to CYP86C2 (cytochrome P450, family 86, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26125.1); similar to CYP86C4 (cytochrome P450, family 86, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13150.1); similar to cytochrome P450 [Brassica rapa subsp. pekinensis] (GB:AAK31592.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0709108005059171 -0.873251222601916 0.401386973674771 1 -0.237821849473961 2.65554534534928 -0.0709108005059171 0.00870650006289914
AT1G51740_at 4.02205938795532 5.07378298009801 4.64930229925686 4.48764294190271 4.99635915640665 4.81223346130878 4.10740015218572 4.26538860589792 4.46295623260958 3.95609263833008 4.24508476230558 3.94139499281535 4.08752540675094 4.27573511252869 4.01937498054452 4.15147730922594 3.60195252310186 3.93808183817083 4.05146509372702 0.262876917252784 0.247233331030140 0.248946446832011 0.245277517953085 0.251921492979418 0.259378009828191 0.244469623816762 0.247792603271983 0.251434238111399 0.244674586745722 0.25053582552055 0.243422538250786 0.242618772830927 0.247829938847582 0.242601092800062 0.242601092800062 0.260162060111296 0.245835580320823 0.243647731723077 1 1|0 +|/ 19193641 19194230 19193951 19192511 19194968 + gene protein_coding_gene FALSE TRUE AT1G51740.1 SYP81 (syntaxin 81) member of SYP8 Gene Family Identical to Syntaxin-81 (AtSYP81) (SYP81) [Arabidopsis Thaliana] (GB:P59277;GB:Q9C8I2); similar to SYP132 (syntaxin 132), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G08080.1); similar to Os12g0154400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066186.1); similar to Os04g0530400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053389.1); similar to B1011H02.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86206.1); contains InterPro domain t-snare; (InterPro:IPR010989) 0.122483530321375 0.873118541030119 0.401456166162648 1 -0.237930952098818 8.64647930007784 0.122483530321375 0.188869079295164
AT3G58770_at 0.559987873324172 0.648834464658562 0.708520106655801 0.503379382202668 0.755448283914527 0.838741875217855 0.725045544315952 0.477174636091074 0.438883738866959 0.941404411416594 0.19743272035437 0.586769758674337 1.41017211726047 0.778438730200291 0.535937832394352 0.875454060357286 0.894495661248466 0.887124809371548 0.763471124872774 0.197937993541317 0.20083785827179 0.201401456652139 0.203183816069399 0.197937993541317 0.200825290913194 0.198967465003664 0.208917009830809 0.198844754524551 0.205428143071879 0.206380596418831 0.204318429364144 0.209723028572947 0.200681498712754 0.197937993541317 0.208834901357987 0.206654003798103 0.201531374839826 0.197937993541317 3 3 + 21745625 21746001 21745832.091 21743235 21746304 + gene protein_coding_gene FALSE TRUE AT3G58770.1 similar to Os05g0518200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056056.1) 0.0774517842904019 0.873111448005727 0.401459865354317 1 -0.237936784215269 1.39479883893995 0.0774517842904019 0.0595353929190372
AT2G26650_at 3.63850349429108 3.17843658030769 2.92249044531832 2.68375561672737 3.16065632139313 3.68647880952431 2.15575528840048 2.05155287391527 2.81326584517973 2.40757816477569 2.45759299310749 2.5494170368927 2.27987947591509 2.43269966833277 2.62411693793856 2.0230346211371 2.68568426435992 2.72467323774537 2.67745419644602 0.225824313481798 0.233070718150782 0.215227237012361 0.216860159685077 0.218784307175057 0.219402739379357 0.211687066392826 0.21917408631999 0.211687066392826 0.223365497144183 0.211687066392826 0.222503495410871 0.218102321488291 0.212818397340275 0.216958091066098 0.211687066392826 0.225850881134636 0.218255021065213 0.221337720351587 2 2 - 11339051 11339599 11339343.545 11338928 11343659 - gene protein_coding_gene FALSE TRUE AT2G26650.1 AKT1 (ARABIDOPSIS K TRANSPORTER 1); cyclic nucleotide binding / inward rectifier potassium channel Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis. Identical to Potassium channel AKT1 (AKT1) [Arabidopsis Thaliana] (GB:Q38998;GB:Q38797;GB:Q84MA7); similar to SPIK (SHAKER POLLEN INWARD K+ CHANNEL), cyclic nucleotide binding / inward rectifier potassium channel/ potassium channel [Arabidopsis thaliana] (TAIR:AT2G25600.1); similar to AKT5 (Arabidopsis K+ transporter 5), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT4G32500.1); similar to potassium channel [Solanum lycopersicum] (GB:CAA65254.1); similar to potassium channel [Solanum tuberosum] (GB:CAA60016.1); similar to inwardly rectifying potassium channel subunit [Daucus carota] (GB:CAG27094.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) 0.0983272248201487 0.872952919262369 0.401542548204452 1 -0.238067121109258 5.48715535284926 0.0983272248201487 0.129039300106474
AT2G31980_at 1.48630355432513 1.85941818208704 2.01022280655045 2.03846093220786 2.18409125191736 2.11330660485744 1.75583930368150 1.93764903804516 2.06248501268444 1.90154054422827 1.72213592891192 1.63576040081335 2.03254245756732 1.65633045175456 1.45772870996564 1.47468008273979 1.40864507018662 2.0883978281723 1.58611113831800 0.188634123107366 0.188932423306421 0.187950456079435 0.193837881324027 0.187950456079435 0.190386456085531 0.190579619301193 0.18937258767392 0.194640048229028 0.189917856253351 0.192856106228128 0.187950456079435 0.196389406350612 0.188482897153716 0.194805777222202 0.189110391567168 0.203063539833713 0.192586173165537 0.193929070424446 2 2 - 13616354 13616821 13616586.273 13616170 13616979 - gene protein_coding_gene FALSE TRUE AT2G31980.1 cysteine proteinase inhibitor-related similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT3G12490.2); similar to cystatin-like protein [Brassica rapa] (GB:ABB97037.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.080599965267802 0.872866274589098 0.401587743862655 1 -0.238138348794696 3.69044804987941 0.080599965267802 0.0730276662405592
AT4G33130_at 0.690619346865925 1.23452893702412 0.850363108821197 1.09729063081304 0.903150113703503 1.12781958737415 0.888022124918798 0.575357177829252 1.58076552675100 1.60370395385414 1.60983579538758 0.899430278854193 1.21184257005620 0.98669359899508 1.57259587767053 0.935040579353294 1.03718390048059 1.48326197669025 1.48547708208207 0.201462406717330 0.200362115795868 0.202899922189455 0.201750418100045 0.196511652494286 0.201436223589911 0.196511652494286 0.199246882000244 0.199796436062538 0.208425790650564 0.202824977893133 0.197304868679033 0.210850190521296 0.198624360447775 0.198953552387756 0.198574939261361 0.216987569249484 0.205464634186769 0.209514366002224 4 4|0 -|/ 15979591 15979915 15979739 15978992 15980755 - gene protein_coding_gene FALSE TRUE AT4G33130.1|AT4G33130.2|AT4G33130.3 |unknown protein similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G13000.1); similar to Os06g0704100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058505.1); similar to Os06g0692800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058429.1)||similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16750.1); similar to Os06g0704100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058505.1); similar to Os06g0692800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058429.1) -0.096069659262327 -0.872415992653363 0.401822676423392 1 -0.238508412698988 2.30771109162627 -0.096069659262327 0.122984117015165
AT1G31320_at 1.35329859112959 0.824332998501455 1.06155771090049 1.13632039578726 1.19969104592279 1.82317804341060 1.71150448066448 1.47766042179717 1.49661318396198 1.31638927185487 1.16426390365445 1.41815791637628 1.47374057766624 1.51564597077843 2.01565957355829 1.45454340708375 2.18401170922657 1.29648123035606 1.14113681856215 0.216526450906622 0.220679272686969 0.212594060238369 0.212795732057430 0.212594060238369 0.214439851336896 0.217529918967685 0.219428408045429 0.214826813537054 0.220190874900158 0.215671776580985 0.218781795513155 0.214381407106889 0.212594060238369 0.216787538598188 0.212882562451589 0.215275787439018 0.217995191984398 0.213621229955332 1 1 + 11213101 11213890 11213515.273 11212998 11214363 + gene protein_coding_gene FALSE TRUE AT1G31320.1 LOB domain protein 4 / lateral organ boundaries domain protein 4 (LBD4) Identical to LOB domain-containing protein 4 (LBD4) [Arabidopsis Thaliana] (GB:Q9SHE9;GB:Q6DBF5); similar to ASL5 (phosphoenolpyruvate carboxykinase1) [Arabidopsis thaliana] (TAIR:AT2G30130.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07117.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.105377143638309 0.872415579760432 0.401822891891639 1 -0.238508751959479 2.76512269145448 0.105377143638309 0.147737724013316
AT1G72840_at 2.3931436748855 2.51077974203427 2.43817838895084 2.29995376922962 2.6650598749676 2.71014066906384 2.33100814389473 1.71177426170749 2.54433224840082 2.22689437163784 2.66274804082829 2.11316297406490 2.2138463639505 2.47035651038653 2.04279180484226 2.68857755516367 2.20729566596666 2.24097531813309 2.54052837925403 0.230239653079596 0.229629327869646 0.220883017945764 0.225598318742097 0.231723723657905 0.228004718196663 0.225090515534329 0.223731219803041 0.224717073783496 0.222990126060596 0.221111705514727 0.229152659228308 0.228591891775223 0.219663699162794 0.232664170791973 0.227134126465762 0.234266338492202 0.224506544618779 0.219311504007490 1 1 - 27413206 27413818 27413486 27412963 27417284 - gene protein_coding_gene FALSE TRUE AT1G72840.1 ATP binding / protein binding / transmembrane receptor similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G09430.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G17600.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G48770.1); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) 0.0921871663292865 0.8721538913035 0.401959469991375 1 -0.238723744973877 4.76611528839068 0.0921871663292865 0.111942047405746
AT4G10710_at 7.42636369806119 7.5986883322177 7.76132441912868 7.7557583921404 7.22680916416395 7.85589397602751 7.07488037487685 7.47526573412349 7.2696209970458 7.70623898798185 7.32545547871858 7.5050518186894 7.40845355524154 7.25391287471148 6.93865964981537 7.66887490475958 7.6680148853515 7.14434477545056 7.28794636704806 0.124077960175521 0.123681147578860 0.127273204542736 0.126404998901664 0.124997658895449 0.130589689822801 0.132140938530315 0.131701765010509 0.139620800402049 0.127100459904782 0.125760798300642 0.125213460657714 0.134965636737452 0.130256938262660 0.136465159279738 0.12543188770982 0.129837137907225 0.135476650489134 0.138819928638402 4 4 - 6602276 6602785 6602562.727 6601985 6606350 - gene protein_coding_gene FALSE TRUE AT4G10710.1 SPT16 (GLOBAL TRANSCRIPTION FACTOR C); metalloexopeptidase encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16. Identical to FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (SPT16) [Arabidopsis Thaliana] (GB:O82491); similar to GTC2 (GLOBAL TRANSCRIPTION FACTOR GROUP C2) [Arabidopsis thaliana] (TAIR:AT4G10670.1); similar to Peptidase M24 [Medicago truncatula] (GB:ABE78552.1); similar to FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (Global transcription factor group C protein 102) (GB:Q8H6B1); similar to Global transcriptional regulator, cell division control protein (ISS) [Ostreococcus tauri] (GB:CAL57298.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994) 0.099487080931174 0.872054748815963 0.402011221862315 1 -0.238805182093628 14.9145553997762 0.099487080931174 0.132449905143179
AT2G34440_at 0.765769279539379 0.658251305515553 0.824561283473758 0.538594468213847 0.618970533520409 0.655357649379352 1.01641074871993 0.56850189270657 0.845372745814766 1.23259155315115 0.714021156005563 0.98764462401471 1.16190465833630 0.966887550724988 1.30600733694528 1.0305195060944 0.606926819633159 0.713797930997066 0.969735818661683 0.185607734039865 0.195200869255462 0.190907529090588 0.191378114110331 0.183971330033207 0.195610605911049 0.182198324994631 0.200964090583496 0.194190932853656 0.191726858465487 0.189229669105703 0.184426642430769 0.185526733037510 0.200703927653600 0.192145282368417 0.185266639093784 0.193337397502058 0.188414264222076 0.186330774389064 2 2 + 14534069 14534523 14534267.727 14534029 14534768 + gene protein_coding_gene FALSE TRUE AT2G34440.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT3G66656.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE85433.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0863993321693914 -0.87201315824743 0.402032933285846 1 -0.23883934283911 1.68173401366017 -0.0863993321693914 0.0940378947072587
AT1G59820_at 6.11887595985202 6.23123195605908 6.25377719880304 6.17420861328147 6.35546220368371 6.43185651572057 6.09608270196752 5.77432414225539 5.86314781204551 5.79268818255869 5.17873385061547 5.68517916883075 5.56899220336644 5.78814378465248 5.45635805652706 5.88077389419672 5.50872219577221 5.98273789965524 5.51669517203999 0.224860942001149 0.229728254672833 0.238312685541001 0.225687771810449 0.223939845704571 0.234452871241873 0.229324957023519 0.226380971606236 0.231037585046344 0.227960733897802 0.222425220852037 0.223744657461245 0.223532145660802 0.230739735110983 0.224249876260092 0.223176246508373 0.237899753834362 0.219296738392538 0.229720600639403 1 1 + 22022887 22023582 22023229.182 22014993 22023959 + gene protein_coding_gene FALSE TRUE AT1G59820.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 3 (EC 3.6.3.1) (Aminophospholipid flippase 3) (ALA3) [Arabidopsis Thaliana] (GB:Q9XIE6;GB:Q8RWQ3); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to putative ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD54494.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) 0.077862759496336 0.871688834911164 0.402202266577117 1 -0.239105680373064 11.8571685050779 0.077862759496336 0.0619911882697707
AT4G34000_at 6.50951609246933 6.6826150121083 7.55675460609901 7.50656736294094 7.57030935989942 7.13709935577433 8.15994125446192 7.78900573344746 6.50477627582205 7.46202670933082 6.56963308031731 6.91422524456346 7.81737587002676 7.3227401229574 6.36452678748906 7.81934463278424 8.10794423000502 7.3826352770131 7.83158653596112 0.176607014356850 0.167926335169849 0.168754224995796 0.169452684964951 0.165892811781359 0.165204422175674 0.165445845110178 0.165663446807138 0.189983260856907 0.166629967111843 0.177793682405546 0.177638215073196 0.168422729968677 0.175965595076772 0.1793619084643 0.163569394526722 0.180390765506171 0.178050179054586 0.163569394526722 4 4|0 +|/ 16296826 16297951 16297243.2 16295435 16298260 + gene protein_coding_gene FALSE TRUE AT4G34000.1|AT4G34000.2|AT4G34000.3 ABF3/DPBF5 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional activator Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. similar to ABF4 (ABRE BINDING FACTOR 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G19290.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0892932316649448 0.871223327370263 0.402445399322021 1 -0.239487810955727 14.6406925951580 0.0892932316649448 0.103507242770352
AT2G26280_at 7.44042950213083 7.69015023467577 7.57721246392357 7.81646022308209 7.63953775991829 7.53595429330818 7.92590353542135 7.91949844525094 7.88462496191958 8.26532756877949 7.96148759685175 8.28548640381505 8.33983711478791 7.98580812416901 7.48569755548755 8.22790283664177 8.22775993148928 7.62655529619172 8.06445842186172 0.132676827336078 0.134018590775382 0.135031714968653 0.138041703430557 0.135766816947322 0.137815892134893 0.134611366587325 0.136010287068027 0.141151750999338 0.132532686588626 0.139676136286198 0.133126990339898 0.130271050547872 0.130271050547872 0.136557753537586 0.130271050547872 0.132648228276291 0.148808182479196 0.130271050547872 2 2|0 -|/ 11195226 11196395 11195614.25 11194811 11198415 - gene protein_coding_gene FALSE TRUE AT2G26280.1 CID7; ATP binding / damaged DNA binding smr (Small MutS Related) domain-containing protein mRNA, complete cds similar to PRLI-interacting factor, putative [Arabidopsis thaliana] (TAIR:AT5G58720.1); similar to Os06g0199200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057066.1); similar to smr (Small MutS Related) domain-containing protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD19433.1); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625) -0.0778038522013504 -0.869799590637962 0.403189636130168 1 -0.240655453379537 15.7376618946886 -0.0778038522013504 0.0624845956848324
AT1G06500_at 4.98842547413296 5.27015348357797 4.24104834480212 5.01859230134865 6.00541839389578 5.47947769617457 5.18265169638241 5.03762551408474 5.05328520883664 5.41294749611451 5.392238271959 5.68063822314562 5.0035990551647 6.13322797943466 5.36372931658363 5.45252797872657 5.30809942387646 5.39325461373555 5.44302007160173 0.221753126473464 0.220249926622623 0.229428767663728 0.220249926622623 0.225701011140507 0.241943766687012 0.224119976498852 0.226881444614927 0.223894594851875 0.221740995817811 0.222956511060891 0.220678634689942 0.22869372651907 0.220249926622623 0.235197353820958 0.223532847475051 0.228096754324956 0.224258186704552 0.233025919393837 1 1 + 1990180 1990552 1990367 1989478 1990729 + gene protein_coding_gene FALSE TRUE AT1G06500.1|AT1G06500.2|AT1G06500.3|AT1G06500.4 unknown protein 0.114625120494038 0.869656885181647 0.403264285162875 1 -0.240772399180707 10.5374234213895 0.114625120494038 0.171454425564272
AT4G38980_at 4.95860956011018 4.83028566542145 5.03926420116205 4.76338103631495 4.71510048773267 5.32908738840935 5.12196865505432 4.7943714845839 5.15292912766822 5.13817351814958 4.8656189261265 4.95359575465676 5.037308002202 4.96976380837579 4.6868899520367 5.10315093065884 5.00979395685891 4.29125876819537 5.00189299663078 0.192255684335684 0.194336809304825 0.195436779934611 0.195153268596747 0.196392276268305 0.213933716381577 0.194582843195456 0.200109861022893 0.203123023805285 0.195533989113855 0.206132864606558 0.191832632981539 0.191832632981539 0.191832632981539 0.194644134932017 0.199516975745843 0.196894359717885 0.195911599058936 0.193714990972939 4 4 - 18166906 18167447 18167160.091 18166703 18168186 - gene protein_coding_gene FALSE TRUE AT4G38980.1 unknown protein -0.098796632324187 -0.869282580760836 0.403460128244848 1 -0.241079059779604 9.9251774231178 -0.098796632324187 0.131439359169313
AT1G35580_at 8.34651277431329 8.29445900231035 7.50532348400447 7.85030625813776 8.05642536032422 7.57840132877211 7.41483405477422 7.0600658785822 8.37719701193061 7.87815998854982 8.10335530580457 8.26316097650144 7.71908526842514 8.0804309052572 7.8676080849131 7.58222140209673 7.41526668671838 7.77202062609429 7.7684869625523 0.152155572223733 0.145082396839906 0.161498466732551 0.151313516568803 0.148091726101061 0.169558463757772 0.148501807736762 0.148646158270519 0.148051478951437 0.145082396839906 0.148130003002514 0.149691014460435 0.151339864991861 0.152923548560674 0.148509882671219 0.149858718040817 0.155947429716724 0.146412867042652 0.151122913795826 1 1 - 13122447 13123415 13123115.636 13122182 13125242 - gene protein_coding_gene FALSE TRUE AT1G35580.1|AT1G35580.2|AT1G35580.3 CINV1 (CYTOSOLIC INVERTASE 1); beta-fructofuranosidase Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9. similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT4G34860.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937)|similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.2); similar to beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT4G34860.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.094454075193296 -0.869246620352842 0.403478946829827 1 -0.241108515489734 15.6924618399793 -0.094454075193296 0.119406481962354
AT1G71850_at 2.76164735446937 2.47834603364528 2.82615344496628 2.89337751454378 2.49153110982031 2.4812685700153 3.12264207695805 3.13517068989028 2.34674890312462 2.18204858182626 2.39675782844618 2.42045092342201 2.21495955948895 2.03274253107156 2.51966066262787 2.42937197968665 2.40024181450465 2.27623396069078 2.32753349199633 0.187163482931768 0.17825686273144 0.184228422942569 0.186732604151199 0.174187477410368 0.176155805571417 0.175358623228477 0.175682966109729 0.178278315408939 0.179988659280522 0.180737959015552 0.177687400431063 0.175251619059172 0.177284448088914 0.175104703823992 0.176710332341915 0.17479240710563 0.179224290356511 0.175841021813044 1 1 - 27028581 27029092 27028866.182 27028394 27030025 - gene protein_coding_gene FALSE TRUE AT1G71850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24320.1); similar to Os03g0646200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050767.1); similar to Protein of unknown function DUF860, plant [Medicago truncatula] (GB:ABE93198.1); contains InterPro domain Protein of unknown function DUF860, plant; (InterPro:IPR008578) -0.0752550651972013 -0.868836165185607 0.403693786316438 1 -0.241444651219315 5.08464013252595 -0.0752550651972013 0.0504658376979552
AT3G20230_at 7.47037835850475 8.16727379549747 7.05984862503413 7.0745252974601 8.74845415866883 8.10643925862291 7.66100119281806 7.90640358166184 7.55676157217472 7.16231850762735 7.80692821018142 7.8223165089881 7.81874416806318 7.53896845703274 8.04464251853313 7.61919069864835 7.13219922725587 7.44073680968622 7.3960764353687 0.200573030165784 0.196121552804128 0.202009018182840 0.202518046378411 0.199424225197062 0.200791685935396 0.197810227852181 0.198154342148413 0.202874347617801 0.202419709807923 0.198368287023332 0.19908510005842 0.194092667497507 0.209407044839094 0.206174695978987 0.199595955831269 0.219184308617912 0.198528261262301 0.197243015530137 3 3|0 -|/ 7055734 7056651 7056234.4 7055359 7056764 - gene protein_coding_gene FALSE TRUE AT3G20230.1 50S ribosomal protein L18 family similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G08845.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07676.1); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484) 0.113649794617165 0.868696334180637 0.403766994203429 1 -0.241559132408151 15.2866328651279 0.113649794617165 0.169406649642728
AT3G24800_at 5.88463134819887 6.38975972214249 6.16269027886842 6.0332048358731 6.78581177346061 6.9651496693048 6.65205049923624 7.20172853007703 6.5427101109454 6.89461684580945 7.20431721948459 7.11248120281256 7.01880142735466 7.11691560856285 7.09972947294669 7.16687077417102 6.85468151327595 7.01769124735275 7.04881126625477 0.211034428254703 0.195605051522623 0.202852598759041 0.200483582804881 0.191533965972480 0.203738826042188 0.210196234368553 0.204228160379949 0.220432194113563 0.190968029295113 0.195343719531682 0.195638351808114 0.193645193861884 0.202584286327576 0.208099821655039 0.194307034850215 0.209038125635323 0.20525943411645 0.192320138193160 3 3 + 9057118 9057766 9057546.636 9055516 9058005 + gene protein_coding_gene FALSE TRUE AT3G24800.1 PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). Identical to E3 ubiquitin-protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1 protein) (PRT1) [Arabidopsis Thaliana] (GB:Q8LBL5;GB:O82767); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18660.1); similar to Os02g0621500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047461.1); similar to Predicted E3 ubiquitin ligase (ISS) [Ostreococcus tauri] (GB:CAL53964.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0999474658525026 0.86861113211629 0.403811605809146 1 -0.241628880507509 13.4607027317694 0.0999474658525026 0.134741607313745
AT2G30290_at 1.33703047681173 1.23833014370822 1.20332813800756 1.30783959054592 1.22276172404780 1.35103894132039 1.39768629812346 1.38944478068204 1.71370380668870 1.54048644445258 1.95099507232891 1.42124921055425 1.71320686320077 1.56316818591516 1.86584119283945 1.72292161502446 1.53581136006933 1.78106170769043 1.18531328979073 0.181445754551929 0.174775869240523 0.188196859363243 0.190572358560637 0.184682759395581 0.185815509380286 0.184539013401051 0.180598628532213 0.187692839445423 0.183211667946746 0.181771892366429 0.178610609467644 0.186462169897176 0.180658620483814 0.178373680636009 0.180585090917538 0.187526114413103 0.184033924717698 0.175762265813439 2 0|2 /|- 12919982 12920908 12920513.556 12919967 12922858 - gene protein_coding_gene FALSE TRUE AT2G30290.1 vacuolar sorting receptor, putative Identical to Vacuolar sorting receptor 2 precursor (AtVSR2) (Epidermal growth factor receptor-like protein 4) (AtELP4) (BP80-like protein c) (AtBP80c) (VSR2) [Arabidopsis Thaliana] (GB:O22925); similar to ATELP1 (VACUOLAR SORTING RECEPTOR HOMOLOG) [Arabidopsis thaliana] (TAIR:AT3G52850.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.2); similar to VSR-2 (Vacuolar sorting receptor 2), calcium ion binding / peptidase [Arabidopsis thaliana] (TAIR:AT2G14720.2); similar to vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum] (GB:ABC01915.1); similar to vacuolar sorting receptor protein homolog PV72 - cucurbit (GB:T00044); similar to vacuolar sorting receptor [Vigna mungo] (GB:BAB64531.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.0725332804789492 0.868459946509437 0.403890774545307 1 -0.241752629555151 2.89299071895431 0.0725332804789492 0.0333719066643363
AT3G18670_at 1.66094595860083 1.57854463474786 1.51726790812592 1.70484312860771 1.25613176221506 1.67909880903918 1.63395157202680 1.37864497311331 1.59319408579452 1.71027481623315 1.96651618957107 1.66175369243789 1.50689728494875 1.63942555262573 1.44607326988582 1.48118979800531 1.57098110562315 2.01538865084125 2.1221161629003 0.219732492322033 0.212240946538241 0.224158039878287 0.215566498389818 0.215170574911061 0.212240946538241 0.217755398942604 0.220517758869545 0.219233122093771 0.212240946538241 0.224582536877885 0.214645521149225 0.216099318974157 0.217773204213879 0.220915980641393 0.223697838396994 0.215136943070791 0.219268282263660 0.219071725899844 3 3 - 6424170 6424599 6424364.818 6424141 6426477 - gene protein_coding_gene FALSE TRUE AT3G18670.1 ankyrin repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04700.1); similar to Ankyrin [Medicago truncatula] (GB:ABE89653.1); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0855932723044256 -0.868381988815973 0.403931601442196 1 -0.241816432556154 3.28595686729377 -0.0855932723044256 0.0925570737786516
AT1G03660_at 2.33055297366092 2.852921752552 3.41222951613495 3.20584599361881 1.91033579002776 1.97675056541106 1.70625621226926 1.78294570889074 2.21755509471298 2.00377802385120 1.11574825701121 1.46737876389279 1.89299254424542 2.02212829665188 1.48972372752016 1.82550117138873 1.41067596412934 1.76390898136389 1.49868851044774 0.215395693551459 0.222611545472462 0.214057357605641 0.213694987351725 0.215018261587259 0.210754187624504 0.21551001068282 0.213479729392677 0.219500265186563 0.215052107015708 0.218946788408133 0.210754187624504 0.218622014359061 0.220089516783653 0.210754187624504 0.215616539340452 0.224195319346378 0.213057837713234 0.213245613595854 1 1 - 911446 911719 911588.909 911435 911758 - gene protein_coding_gene FALSE TRUE AT1G03660.1 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G03670.1); contains domain ANK REPEAT-CONTAINING (PTHR18958:SF80); contains domain ANKYRIN REPEAT-CONTAINING (PTHR18958) 0.0874773206965195 0.868183635838832 0.404035492774729 1 -0.241978748580834 4.16232035887705 0.0874773206965195 0.0987709400172643
AT4G26430_at 4.93157642281239 5.01346421545893 5.02183874303597 4.68737762983160 4.67703520193715 4.65883794314433 5.32130317603065 5.27629594267158 3.56231559512257 3.93510814117352 3.74713073395177 3.78554699609126 4.14660482290769 3.5292094823634 4.33367107512106 3.58539234867997 4.05177751992486 3.8949897598009 3.49518871439117 0.27116215277674 0.270284451309350 0.281028058885258 0.279382351199618 0.268501050173292 0.2920744136019 0.27420847543523 0.278050733970493 0.29555377670415 0.268501050173292 0.272997711769854 0.268501050173292 0.281992800406276 0.275473355768692 0.268501050173292 0.268501050173292 0.274680434080328 0.270421494413585 0.268501050173292 4 0|4 /|+ 13355807 13357308 13356219.556 13355000 13357610 + gene protein_coding_gene FALSE TRUE AT4G26430.1 CSN6B (COP9 signalosome subunit 6B) one of two genes encoding subunit 6 of COP9 signalosome complex Identical to COP9 signalosome complex subunit 6b (Signalosome subunit 6b) (AtCSN6b) (CSN6B) [Arabidopsis Thaliana] (GB:Q8W1P0;GB:O65591;GB:Q8RXW5;GB:Q8W205); similar to CSN6A (COP9 signalosome subunit 6A) [Arabidopsis thaliana] (TAIR:AT5G56280.1); similar to COP9 signalosome subunit 6 [Chlamydomonas reinhardtii] (GB:ABC49916.1); similar to Os08g0500000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062152.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639) -0.0771506838150485 -0.86815636157119 0.404049779645933 1 -0.242001065139146 8.72271340565742 -0.0771506838150485 0.0601789072763658
AT2G43130_at 7.58699256450185 7.85730712478568 7.69979280236436 7.9889503973368 8.29595163711046 8.1167522032085 9.16764073824026 9.2183435389776 7.2170380140088 7.16537184171282 7.95823013143234 7.62504817455589 7.94473736543444 7.7105914484098 7.58594368497506 6.99876317583232 7.73186517261039 7.84183132662598 6.85989033270896 0.195551329357101 0.186397814929259 0.19069498711336 0.189828081437875 0.188794356906075 0.190014666065197 0.188511861838346 0.191924740819984 0.202459088964029 0.193376626933888 0.189393132434608 0.189883841095433 0.188163125018947 0.200057675264327 0.192636046427842 0.187996773866876 0.202032906817856 0.192391680923191 0.203684925277111 2 2|0 -|/ 17937145 17937902 17937716 17936731 17938013 - gene protein_coding_gene FALSE TRUE AT2G43130.1 ARA4 (Arabidopsis Rab GTPase homolog A5c); GTP binding encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic. Identical to Ras-related protein ARA-4 (ARA-4) [Arabidopsis Thaliana] (GB:P28187); similar to ARA/Ara-1/AtRABA5e/AtRab11D (Arabidopsis Rab GTPase homolog A5e), GTP binding [Arabidopsis thaliana] (TAIR:AT1G05810.1); similar to AtRABA5d (Arabidopsis Rab GTPase homolog A5d), GTP binding [Arabidopsis thaliana] (TAIR:AT2G31680.1); similar to small GTP-binding protein (GB:AAA68983.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.0808251744431725 0.867891644043637 0.404188462553079 1 -0.242217632981028 15.6191628955464 0.0808251744431725 0.0757033135226136
AT2G16780_at 3.10803276565633 2.93343248696178 3.07625339693275 2.9569228289799 2.30676823283248 2.66834126062763 2.77266985718533 2.27289916843535 2.38027268852494 2.85200039407756 2.68301267496422 3.16607468866971 2.58574239653180 2.87628958700605 3.1419811342881 2.43264744660052 2.85566264460203 2.89492757880394 2.64505520036352 0.197525702202844 0.191856222810349 0.187307107709202 0.190802711962487 0.191881583574514 0.196666511713384 0.207983550076835 0.195123056063637 0.209439826933533 0.187077652437816 0.203909935969115 0.191806338554117 0.188685954068023 0.199839247093717 0.190120971421978 0.193143456427321 0.192189140897237 0.189155455555282 0.190302181095883 2 2 - 7288768 7289675 7289206.818 7288544 7290728 - gene protein_coding_gene FALSE TRUE AT2G16780.1 MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) Encodes a WD-40 repeat protein similar to yeast MSI1. Identical to WD-40 repeat protein MSI2 (MSI2) [Arabidopsis Thaliana] (GB:O22468); similar to MSI3 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3) [Arabidopsis thaliana] (TAIR:AT4G35050.1); similar to putative retinoblastoma binding protein [Gossypium hirsutum] (GB:ABC79303.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.0920395174473906 0.867852800117876 0.404208815241342 1 -0.242249406771954 5.4895741813291 0.0920395174473906 0.112848472238075
AT1G76420_at 0.279989119235366 0.701426262071441 0.846004260771789 0.775987561071448 0.429298979637403 0.652233322354971 0.756277842543842 0.765030339551543 0.476808793396019 0.899546571599885 0.856371797000413 1.05976964216763 0.434977871214036 0.973644378384988 0.929018058443135 0.497658514775969 0.596511485535578 1.02513171783295 0.666836960146678 0.189878477242346 0.186609884250741 0.190822646689010 0.187378612831564 0.190477885317488 0.185321051302809 0.197314753927718 0.188620329385444 0.185271909306901 0.184669195851419 0.206591515774976 0.190251205220018 0.187636047844709 0.193075257019793 0.188540149315708 0.182142665701056 0.19373211192533 0.189508331555825 0.185244067347407 1 1 - 28676936 28678136 28677250.909 28676923 28678828 - gene protein_coding_gene FALSE TRUE AT1G76420.1 CUC3 (CUP SHAPED COTYLEDON3); transcription factor Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac. similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT2G24430.2); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE82592.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0828857324484152 0.867764467935798 0.404255100436468 1 -0.242321656712324 1.38963073167982 0.0828857324484152 0.0834058726902884
AT1G17950_at 0.70545672708909 0.408916277796248 0.638055265811447 0.456491556281312 0.393913148103062 0.686217246476292 0.479443725170646 0.734565524729559 1.17895569920696 0.828066933397317 0.828529573805175 0.483007294790048 0.344691539705127 0.286041392990642 0.791741709415535 0.574107164356884 1.17277182774164 0.722462581157627 0.337799089153095 0.186591230139346 0.186197399298245 0.188286120436284 0.188576490674282 0.187035253559738 0.189213162259556 0.189746583135076 0.185397491370031 0.208570679023004 0.188135838334879 0.198176556828767 0.183937372332028 0.194349285016533 0.193845881363940 0.188212650582745 0.184587701644685 0.191988856037015 0.191418540520466 0.190206635754580 1 1 + 6178072 6179030 6178361 6177610 6179282 + gene protein_coding_gene FALSE TRUE AT1G17950.1 MYB52 (myb domain protein 52); DNA binding / transcription factor putative transcription factor: R2R3-MYB transcription family similar to MYB54 (myb domain protein 54), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G73410.1); similar to Os03g0720800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051101.1); similar to MYB transcription factor R2R3 type [Populus tremula x Populus tremuloides] (GB:CAD98761.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0848071823094066 -0.86762699993899 0.404327139522617 1 -0.242434083942553 1.27889562197277 -0.0848071823094066 0.0901597255690957
AT2G35520_at 6.23052789091458 6.46374340181839 5.64551043574851 6.16240617669241 6.38647456093353 5.29847751622923 6.27540835146586 6.3351406914347 5.17121051095871 4.79950422768314 5.50005532526295 6.05954924545172 5.87175492180814 6.05899233036699 5.72488339421103 5.35432466306232 4.77031127789649 5.84022145972438 4.82035863312643 0.311814211611932 0.290431172883458 0.307369523762691 0.314226344268857 0.293740280698491 0.297827002567657 0.30063568119741 0.295941184048733 0.289463766830837 0.287671379541258 0.289784603136989 0.287671379541258 0.290009483491880 0.287671379541258 0.303483612535587 0.287671379541258 0.304605643139175 0.300676438312596 0.287671379541258 2 2|0 +|/ 14928719 14929698 14929220.333 14928571 14929924 + gene protein_coding_gene FALSE TRUE AT2G35520.1|AT2G35520.2 defender against cell death 2 (DAD2) Identical to Defender against cell death 2 (DAD-2) (AtDAD2) (DAD2) [Arabidopsis Thaliana] (GB:O22622;GB:Q94A89;GB:Q9SLH6); similar to ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) [Arabidopsis thaliana] (TAIR:AT1G32210.1); similar to DAD1 [Petunia x hybrida] (GB:AAO73434.1); contains InterPro domain Defender against death DAD protein; (InterPro:IPR003038) 0.132082937563056 0.867587799983966 0.404347683576831 1 -0.242466140540078 11.3886458120609 0.132082937563056 0.212573984286443
AT3G04740_at 5.63522659296759 6.53293101170275 5.32263523873764 5.96821882297625 5.84875829698636 5.79119568249115 5.146427244919 5.83800929915753 5.47165212977091 6.08810654190363 6.14983280370851 5.95814896344169 5.6751155281628 6.01131035925986 5.40173354048754 6.24790262804055 5.87375123452625 5.47870091670431 6.65088107812396 0.197910699663371 0.199458702332649 0.208298657405132 0.201942324134264 0.20491003813661 0.205725782635127 0.200619692592894 0.206755308117443 0.214140333950930 0.202367646189366 0.20092531028629 0.199700952646535 0.200304213897838 0.20823477968512 0.200939697492792 0.197910699663371 0.207702471275781 0.202601325283344 0.199932532138815 3 3 + 1299977 1300483 1300235.545 1293813 1300720 + gene protein_coding_gene FALSE TRUE AT3G04740.1 SWP (STRUWWELPETER) encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors. similar to Os08g0332800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061570.1); similar to Os09g0281900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062771.1); similar to SWP1 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01689.1); contains domain gb def: F7O18.23 protein (SWP1) (Struwwelpeter 1 protein) (PTHR12809:SF5); contains domain FAMILY NOT NAMED (PTHR12809) -0.138048890015130 -0.867419232847129 0.404436034983163 1 -0.242603975698429 11.7203128971044 -0.138048890015130 0.225917583088565
AT2G12900_at 1.87133143997191 1.31853242926040 1.54749827778059 1.56746802981465 1.42774115507766 1.60891735399111 1.69614418375651 1.41090846564535 1.61491083417985 1.99456076522526 1.38136231612550 1.46104484561432 1.88978282611193 1.14086215573634 1.60605184026072 1.84671867582484 1.74552728731291 2.11454541225079 1.77662467137753 0.193842328484703 0.200302097877192 0.187767545200670 0.196161612091745 0.196986933077528 0.187767545200670 0.189298313657342 0.19696975402621 0.19541688815959 0.19132341995734 0.213442955719101 0.197503930878050 0.191152041810028 0.197162673180007 0.197387541762636 0.187767545200670 0.18905298383499 0.200207533801453 0.193050022294116 2 2|0 +|/ 5301327 5302516 5301957.444 5300979 5302562 + gene protein_coding_gene FALSE TRUE AT2G12900.1 DNA binding / transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT2G13150.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE79946.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.091725714591042 -0.86704415988189 0.404632670014092 1 -0.242910585277043 3.27786883866171 -0.091725714591042 0.112174904382981
AT1G20940_at 1.85494951088232 2.27518697278001 2.43052972211813 2.15665216457800 1.32873394366055 2.2972946745782 1.81460692659254 2.65008630289026 2.35198433410888 2.55943257324623 2.50170974417358 1.79477697659831 2.21813006001954 2.13837389614403 2.19951422922169 2.02021696897752 1.88502070695696 2.37067853369252 2.08569656022924 0.223376786736818 0.223376786736818 0.230904362303679 0.240050386262473 0.224535875432544 0.227378354459051 0.228457300473858 0.235818922354774 0.233803975855297 0.233677111656515 0.230051076046695 0.229955067159453 0.224090886762353 0.227973019031662 0.225570427602902 0.22888864508774 0.229358213289561 0.228996678830767 0.230518815741630 1 1 - 7295295 7295822 7295508.364 7295263 7296507 - gene protein_coding_gene FALSE TRUE AT1G20940.1 F-box family protein similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT1G20240.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.143361659220495 -0.866894496234311 0.404711150623020 1 -0.243032898432128 4.33771692492724 -0.143361659220495 0.237768802730405
AT4G10840_at 9.94214401251335 10.0765944626435 9.94350510856608 10.0645438641970 10.0213236453405 10.1402307956390 9.80067419660488 9.86270001986997 10.5256386670223 9.91431435479281 10.4865828845310 10.2224441702026 9.97430915764079 10.1223002204007 10.2265776928802 10.0207639147590 9.99066603050928 10.3120114885167 9.99502239590549 0.0720949804611849 0.0719825497793816 0.0706154303075053 0.0728425223219673 0.0714565113936384 0.0774149600641365 0.0709586476837978 0.0735319880616895 0.0759336243819779 0.0747928018738017 0.0696445814498351 0.0713772138729408 0.0738892432152982 0.071641477645842 0.074021936494513 0.069571450909101 0.0717152686060149 0.0736079220847235 0.0715479395929288 4 4 + 6657988 6658994 6658714.636 6656512 6659261 + gene protein_coding_gene FALSE TRUE AT4G10840.1|AT4G10840.2 kinesin light chain-related similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT3G27960.1); similar to kinesin light chain-related [Musa acuminata] (GB:ABF70051.1); similar to glycoside hydrolase family 17 protein [Musa balbisiana] (GB:ABF70142.1); similar to similar to A. thaliana protein BAB01483 similar to kinesin light chain [Hordeum vulgare subsp. vulgare] (GB:AAM13438.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT3G27960.1); similar to Os02g0708400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047883.1); similar to Os02g0109800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045645.1); similar to similar to A. thaliana protein BAB01483 similar to kinesin light chain [Hordeum vulgare subsp. vulgare] (GB:AAM13438.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0731689097754451 0.866866610523381 0.404725774478859 1 -0.243055686121009 20.1386888885902 0.0731689097754451 0.0389712867077376
AT4G08950_at 1.97453141302802 2.37305533650113 2.39481720297737 1.85620792747018 1.63406455944741 1.91756073307394 1.56917583281713 1.86614929332334 3.26273431696873 1.69340152542063 3.75277671256372 2.29955197812454 1.44515059524030 1.86433288182764 2.2543579080049 2.12081740376228 0.78052050769244 1.51997243143623 1.67383376484165 0.22335782776628 0.220827815869837 0.230993940937635 0.228443316480286 0.22849784997671 0.225982025742675 0.223662392849198 0.219855578671460 0.249138953792601 0.225833760249789 0.221599744247720 0.223753970112701 0.228228075624167 0.223648566284475 0.219855578671460 0.231542154855266 0.222574642169354 0.231039532697569 0.231004293234003 4 4 + 5740725 5741278 5741021.909 5740294 5741521 + gene protein_coding_gene FALSE TRUE AT4G08950.1 phosphate-responsive protein, putative (EXO) similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; (InterPro:IPR006766) -0.100185089960340 -0.866630369099309 0.404849678957953 1 -0.243248712938846 4.05553274803407 -0.100185089960340 0.135986679211394
AT1G55440_at 0.625356275420463 0.52075929133525 0.906484373927516 0.478764427215452 0.711807687791007 0.637686057246792 0.659893989008706 0.635192460229611 0.525483456753954 1.15006803600383 0.82362360970792 0.645347684026776 0.752578857113303 0.71353501317814 0.898452507884209 0.862563507752481 1.13238844943991 1.42594038855444 0.778179022033727 0.18545246836099 0.187347713215428 0.189301508601471 0.194668606399085 0.190247793057653 0.186635301109585 0.198379543507123 0.191639208370365 0.189323236921215 0.19354512712619 0.18545246836099 0.191437941524661 0.18575313227767 0.192272590694677 0.195793045099686 0.193864133184717 0.190924613457573 0.19192183978541 0.197631362219039 1 1 - 20705247 20705734 20705525.455 20705165 20707126 - gene protein_coding_gene FALSE TRUE AT1G55440.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55380.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55390.1); similar to EDA11 (embryo sac development arrest 11) [Arabidopsis thaliana] (TAIR:AT1G55420.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.0811393565783315 0.866535303586458 0.404899546462266 1 -0.243326375754308 1.50935003217401 0.0811393565783315 0.077390282393531
AT4G19620_at 2.34681457380956 2.16344511430036 2.97425057782957 2.63394703835179 2.18311368453266 2.65754458810854 2.05658578487744 2.69569445341105 2.70853998874863 2.25978289257745 2.72461557491705 2.40534176211474 2.19448456448555 2.27358384338597 2.58962912682301 2.31019105920920 2.35915929982552 2.56193072416941 2.56313152983085 0.210898283697125 0.200718789973074 0.208288621674726 0.205217571407273 0.200941777949759 0.206921760287974 0.201537872217043 0.200718789973074 0.210607396652286 0.205180956191963 0.207605827325159 0.200718789973074 0.203120802782891 0.203946043558314 0.200718789973074 0.205117709079806 0.204811685965341 0.207183785476959 0.209375254183764 4 4 - 10682474 10682810 10682615.182 10682443 10682854 - gene protein_coding_gene FALSE TRUE AT4G19620.1 unknown protein 0.106730590626685 0.866099274549254 0.405128323333015 1 -0.243682491313403 4.93285037594526 0.106730590626685 0.153128974833026
AT2G02820_at 2.06655854580863 2.27965716496589 2.55098079239245 2.67745094270681 2.1255810853697 2.44092379565647 2.91683391475529 2.81628489820000 2.41204216537451 2.0895237073105 2.42026641981018 2.53301678556176 2.78735550641433 2.42275776232002 2.69751899668261 2.22970068074543 2.38715374344293 2.22470799886939 2.19597271330739 0.188145783456324 0.183776035251066 0.186409213143296 0.181031833628452 0.185282763403456 0.187235366913979 0.181450854210905 0.194387140092255 0.181808124604376 0.184394918171366 0.185292099772861 0.187144489275367 0.188067275943796 0.190432605379647 0.186725745904942 0.186629875235987 0.182984678504648 0.185793090442416 0.184218652661901 2 2|0 -|/ 806154 807067 806436.556 804173 807207 - gene protein_coding_gene FALSE TRUE AT2G02820.1|AT2G02820.2 MYB88 (myb domain protein 88); DNA binding / transcription factor Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype. similar to FLP (FOUR LIPS) [Arabidopsis thaliana] (TAIR:AT1G14350.2); similar to Myb, DNA-binding [Medicago truncatula] (GB:ABD32995.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.079598698916133 0.8660129553207 0.405173624001624 1 -0.243752972033883 4.83194519184605 0.079598698916133 0.0715527882017721
AT2G01570_at 8.67429656231724 8.94409041990918 8.4328235060774 8.69591610358462 9.0066665378015 8.82941049683755 9.45215108087307 9.36839106007847 8.64648448086211 8.53118407658095 9.07160569303198 9.11387705461067 8.89185250359647 8.70768457431648 8.61423461382873 9.14870639771653 8.92979935753518 8.29546018624608 8.7371749444789 0.144821431761928 0.143296307061285 0.147727593503003 0.153961698268001 0.141548802006637 0.147071692528174 0.143919645146087 0.151817627829160 0.162107795934803 0.146841962313728 0.147512929079530 0.148605671945081 0.150289448033489 0.156172272323482 0.154972552208889 0.143682980294984 0.142122079965607 0.158677251218231 0.160948823944149 2 2 - 255587 256154 255918.818 255248 257549 - gene protein_coding_gene FALSE TRUE AT2G01570.1 RGA1 (REPRESSOR OF GA1-3 1); transcription factor Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. Identical to DELLA protein RGA (Repressor on the ga1-3 mutant) (GAI-related sequence) (Restoration of growth on ammonia protein 1) (RGA) [Arabidopsis Thaliana] (GB:Q9SLH3;GB:O23642;GB:O23725;GB:Q941D4); similar to GAI (GA INSENSITIVE), transcription factor [Arabidopsis thaliana] (TAIR:AT1G14920.1); similar to DELLA protein RGA1 (RGA-like protein 1) (BrRGA1) (GB:Q5BN23); similar to DELLA protein GAI [Gossypium barbadense] (GB:ABG26370.1); similar to DELLA protein RGA2 (RGA-like protein 2) (BrRGA2) (GB:Q5BN22); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.0800783697081378 -0.865896716753276 0.405234631921911 1 -0.243847872707998 17.6679350783937 -0.0800783697081378 0.073510941723666
AT1G06070_at 5.77834426356066 6.18486325517444 5.79259174281499 6.00454238788379 6.14766969154591 6.08946619988977 5.46236323933427 5.49006981796489 6.57478085925366 5.63962926848783 6.19455795331554 5.98918628887844 6.15524684180567 5.35186244721918 6.36883057524651 6.07172230810675 5.74346898312538 6.14287764901684 6.14044900598924 0.235477616172743 0.229309226075837 0.232070725079787 0.234600188392075 0.229309226075837 0.233650434119769 0.237327157533001 0.229309226075837 0.237734037995236 0.242825930614315 0.238806941780580 0.229309226075837 0.230463057581426 0.241986203418446 0.230901799044692 0.229309226075837 0.240250068525899 0.231060271005172 0.232171703607298 1 1|0 -|/ 1835207 1836133 1835416.5 1834828 1837647 - gene protein_coding_gene FALSE TRUE AT1G06070.1 bZIP transcription factor, putative (bZIP69) similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31370.4); similar to Transcription factor RF2a (GB:Q69IL4); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0817950572270474 0.865774460088387 0.405298805214727 1 -0.243947674901972 11.9289915791459 0.0817950572270474 0.0801181545344074
AT1G21080_at 8.4100136505478 8.55325874070893 8.63645509072304 8.58810378361985 8.5781764215509 8.68398737783327 8.98623060407338 9.2552642334407 8.83142895589418 8.5588985788237 8.67167677445911 8.41698078098308 8.72544365037333 8.7569570030382 8.30418014620153 8.75306873019493 8.63721719263015 8.84308316227118 8.44346623452783 0.131327690912635 0.132559073863048 0.133746979733227 0.126977520144679 0.127142144098522 0.127501839059056 0.129795735067236 0.124750770594427 0.123191095300764 0.125899109413995 0.124129587716309 0.125503594084945 0.136369806134633 0.127440815524115 0.127996194644316 0.11997358546877 0.137449325474676 0.124016408086952 0.133565047835474 1 1|0 -|/ 7378817 7380177 7379550.222 7378578 7382451 - gene protein_coding_gene FALSE TRUE AT1G21080.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76700.1); similar to DnaJ-like protein [Brassica juncea] (GB:AAW50121.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.07609989924528 -0.865116924557031 0.405644068773516 1 -0.244484234912763 17.336356497696 -0.07609989924528 0.0564572260416187
AT4G29870_at 7.22976988990913 7.81016908436913 6.50390820395656 7.10303845110983 6.87022158411175 7.36278164359377 6.28923789283525 7.31171721156058 7.10910815912075 6.56718721550896 6.8516610528947 6.84417285147236 6.80345861481583 6.72581637949732 6.86813779811464 6.44434164114764 5.54770095295463 6.8071917979668 6.43220708340839 0.218640115474812 0.208613797342899 0.210273543350864 0.213224080510941 0.217392349561410 0.222899335802241 0.208854710759723 0.208186296036368 0.214877029343374 0.209659378753101 0.206903068975158 0.208391453259610 0.211671104408078 0.212635497216637 0.2111707564723 0.206903068975158 0.251728213141693 0.211308649954380 0.211882876946639 4 4 + 14606026 14606512 14606253.818 14606007 14606680 + gene protein_coding_gene FALSE TRUE AT4G29870.1 similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT2G19340.2); similar to Os02g0315400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046663.1); similar to hypothetical protein DDBDRAFT_0204707 [Dictyostelium discoideum AX4] (GB:XP_641827.1); contains domain SUBFAMILY NOT NAMED (PTHR13160:SF2); contains domain FAMILY NOT NAMED (PTHR13160) -0.145755032773463 -0.864789054285051 0.405816304283263 1 -0.244751651347375 13.7173026395744 -0.145755032773463 0.243749177055874
AT1G21210_at 2.31405121729433 2.09950148807444 2.48314938317643 2.78385874125522 1.57622884139873 2.30128737844355 1.61562052638089 1.95340097905385 2.31100861828173 2.30499122909687 2.02440418908939 2.11969991852216 2.33917792911869 2.3235796671824 2.3925250137266 2.30983176269310 2.12491221039741 2.33345401588424 2.35553437562881 0.201915972601932 0.205077304004756 0.206364602013070 0.216115346125471 0.199412861496002 0.203853933026722 0.194211866581578 0.199815541770307 0.202957580501698 0.204148627300657 0.194155104300103 0.196402189824665 0.203170759697337 0.198357865469016 0.201902084107109 0.196139647034622 0.198702939384760 0.198716588944566 0.193408813627407 1 1 + 7426506 7426935 7426752.364 7424642 7427030 + gene protein_coding_gene FALSE TRUE AT1G21210.1 WAK4 (WALL ASSOCIATED KINASE 4); protein serine/threonine kinase cell wall-associated ser/thr kinase involved in cell elongation and lateral root development Identical to Wall-associated receptor kinase 4 precursor (EC 2.7.11.-) (WAK4) [Arabidopsis Thaliana] (GB:Q9LMN6;GB:O81819); similar to WAK2 (wall-associated kinase 2), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21270.1); similar to WAK1 (CELL WALL-ASSOCIATED KINASE), kinase [Arabidopsis thaliana] (TAIR:AT1G21250.1); similar to WAK5 (WALL ASSOCIATED KINASE 5), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21230.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.106295440345940 0.864674445463189 0.405876521905085 1 -0.244845107606978 4.42578373404929 0.106295440345940 0.152471198082597
AT1G07560_at 2.09381478655082 1.82581808294068 2.18753095103863 2.00635473815831 1.38937866268361 1.86034068828307 1.73732359320499 2.10947989850552 1.59851126309495 2.05003955156678 2.06648018542151 2.02970929928501 1.97989196640762 1.98332520648835 1.70587897760900 1.9938931434453 2.80370283104363 2.38672037308009 1.90466549486758 0.181432001386525 0.182316868107398 0.179683074242691 0.188138188765621 0.183130209608135 0.184292984070193 0.179683074242691 0.185407430398898 0.189430071786418 0.185305783131699 0.179683074242691 0.183493605357503 0.181986911490789 0.189834809525169 0.183896137277394 0.188643961593788 0.188136869976154 0.199271791784646 0.185210322234821 1 1 + 2330446 2331064 2330768.455 2327317 2331093 + gene protein_coding_gene FALSE TRUE AT1G07560.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to MEE39 (maternal effect embryo arrest 39), kinase [Arabidopsis thaliana] (TAIR:AT3G46330.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0934601572057642 0.86460069399509 0.405915275532203 1 -0.244905241630833 3.88614135068271 0.0934601572057642 0.118001532492468
AT4G27540_at 3.7857809966081 4.12515446691582 3.96760602055587 4.27944760649649 3.89126321288097 3.20370374180388 3.32816333063712 3.64009335468582 2.94722968141684 3.12790579488303 2.19730480143412 2.72577880242071 2.78816216316155 2.86883963046734 2.29058010364130 2.86667391489053 2.88087990907856 2.90799141324681 2.98309948621404 0.2299680050432 0.23561702933486 0.225760798951985 0.24409876279029 0.245444074164557 0.241196969893772 0.230495081568952 0.233611703422432 0.230481074624406 0.236452463038482 0.226225150627484 0.231502918585053 0.244440310756664 0.227745099600885 0.231546255818453 0.225760798951985 0.235383572173497 0.232970699681409 0.231424168395452 4 4 - 13753474 13754487 13754083 13753216 13754751 - gene protein_coding_gene FALSE TRUE AT4G27540.1 prenylated rab acceptor (PRA1) protein-related similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT5G07110.1); similar to Os09g0134400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062634.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) -0.106464101828050 -0.864098882506421 0.406179025660459 1 -0.245314281494919 6.63274558955497 -0.106464101828050 0.153078358307018
AT3G59830_at 1.51946093968822 1.59977463589581 1.58464117916806 1.53750125228007 1.28449924035421 1.42984051639338 1.31143377854810 1.45469835234078 1.32789153423618 1.48421079709225 1.13965470942000 1.23921965559874 1.56058510694541 1.61704437554656 1.35824485425610 1.11549408793460 1.73939971739205 1.57656500116701 1.84347284855166 0.187315474896123 0.181271564444889 0.183710054041435 0.181271564444889 0.181271564444889 0.186540259558618 0.188651745427049 0.183755211259724 0.181271564444889 0.191269448143775 0.189497336074229 0.193661658494074 0.184542785928058 0.182501999931900 0.184393193631194 0.181271564444889 0.181271564444889 0.185289745794026 0.183916249500480 3 3|0 -|/ 22114107 22114910 22114381.889 22113780 22116357 - gene protein_coding_gene FALSE TRUE AT3G59830.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative (APK1) [Arabidopsis thaliana] (TAIR:AT2G43850.1); similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G31800.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06432.1); similar to ankyrin-kinase [Medicago truncatula] (GB:AAL78674.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06433.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0729019171650471 -0.86396522094218 0.406249297361507 1 -0.245423198073666 2.95029840274654 -0.0729019171650471 0.0388203260359227
AT1G33980_at 7.08169734877365 7.24878687603767 7.0904193281148 6.92319130715854 7.62758656650245 7.32874022444408 7.02499848406466 7.21395416642531 6.59109548956965 6.4105385307134 6.7026762407673 6.67646208066255 6.69414995097669 6.90537189665795 6.47461188532973 6.8488502113835 6.02136414829696 6.21715806684632 6.52196138268962 0.173363416939616 0.173226502139431 0.190047192614848 0.178337616636154 0.187603473105656 0.201531839506538 0.173864029088979 0.182360814156878 0.177975199630382 0.182218785546657 0.171117303586682 0.174829161760981 0.174591365372716 0.178343332119013 0.179953702623171 0.17155186871972 0.201598751778891 0.175577071335935 0.169095815606911 1 1|0 +|/ 12353536 12354489 12353898.25 12351573 12355003 + gene protein_coding_gene FALSE TRUE AT1G33980.1 ATUPF3/UPF3; nucleotide binding Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) similar to H0525C06.10 [Oryza sativa (indica cultivar-group)] (GB:CAH66847.1); contains InterPro domain Nonsense-mediated decay UPF3; (InterPro:IPR005120); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) 0.0799202817602727 0.863933987306355 0.40626571943837 1 -0.245448647282287 13.7301446349098 0.0799202817602727 0.0736036919590591
AT2G13950_at 1.86259750883356 1.97165714440336 2.15322327723959 2.32522922937449 1.91398384421351 2.22091374750473 1.99329144345385 1.95457341077099 2.79266582401297 1.77039855691019 1.98601048154553 1.90474259317269 2.04965559733501 1.66299021157333 2.27635949030636 2.00272112244629 2.04548845595171 2.13677952862728 1.61879989786358 0.18216930320079 0.181075413268987 0.183597940028807 0.180546958492350 0.180218261938564 0.181987022628773 0.178157651426361 0.186222992329888 0.178566955990741 0.182597883247968 0.178539530699500 0.180215022102043 0.180616132392469 0.177135186789067 0.179054764413398 0.177040241035658 0.187473613953644 0.179085627554409 0.182298130616654 2 2|0 +|/ 5865641 5866306 5865844.9 5864618 5866331 + gene protein_coding_gene FALSE TRUE AT2G13950.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02340.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G13900.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02330.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.0776398282875856 0.86392515753097 0.406270362055549 1 -0.245455841651436 4.08379113141527 0.0776398282875856 0.0640968645147893
AT3G19840_at 5.00726321651575 5.0708338275504 5.04706529036192 5.00502760852161 5.38562513705566 5.19107680288417 5.15600088124872 4.57871802986926 4.67105318870983 5.19613629227728 4.43885109278377 4.71370178038933 4.15477439903244 4.47563557418882 4.87099638935664 4.94497183239661 4.6787000565442 4.07699725291593 4.91417752695815 0.178060481721256 0.178843608721169 0.184478055870998 0.183098729916196 0.180973071835701 0.183092454524548 0.180144768095495 0.180418925685231 0.188862506003482 0.182886267277488 0.177384472470647 0.184276267813550 0.177384472470647 0.189180487127380 0.177412221956942 0.177384472470647 0.181290381492095 0.182778950228011 0.180071417370657 3 3|0 +|/ 6896413 6897142 6896831.5 6891135 6897233 + gene protein_coding_gene FALSE TRUE AT3G19840.1 FF domain-containing protein / WW domain-containing protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G44910.1); similar to hypothetical protein [Oryza sativa] (GB:AAL59029.1); similar to Os10g0485000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064893.1); contains InterPro domain FF; (InterPro:IPR002713); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.0893995339354854 -0.863629555609898 0.406425807794854 1 -0.245696657113179 9.7909267908423 -0.0893995339354854 0.106243856957665
AT4G34880_at 0.720403978486663 1.18150509678632 1.16449667509206 1.29748107350564 0.888787697410445 1.05500547562001 0.661722571164973 1.27884547561775 0.605834069975927 1.07760911718301 0.930585485746509 0.621287388331338 0.96086221795966 1.20611497411554 1.02447837986784 1.23276448608269 0.744690294603793 1.06953530233042 1.05674436741246 0.183173308718865 0.181478199410064 0.187211083287982 0.183295199858088 0.183076144375943 0.182799141519557 0.182586845517649 0.183596701484676 0.185441209379035 0.188252888830046 0.182616444417033 0.185127109562628 0.188265449100402 0.188792177468045 0.183535874984768 0.188527247145928 0.183895833754173 0.189253695118035 0.182102097833945 4 4 + 16616791 16617404 16617094.091 16615554 16617429 + gene protein_coding_gene FALSE TRUE AT4G34880.1 amidase family protein similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G07360.2); similar to amidase, putative [Brassica oleracea] (GB:ABD65012.1); contains InterPro domain Amidase; (InterPro:IPR000120) 0.100608707249517 0.862764193089867 0.406881101974921 1 -0.246401226167324 1.97462383928725 0.100608707249517 0.138310427815151
AT3G57890_at 8.28275402222065 7.97483313005028 8.12585760084061 7.92208714953091 8.27237791509377 8.19773472196414 7.8984398021882 8.0025922458656 8.86138885971553 8.82529643557497 8.6187081824182 8.83547063866008 8.73423177877803 8.48190033461885 8.6904907843607 8.4789941246574 8.55114968407886 8.33373067909779 8.82475775418798 0.165470233298802 0.159851431735264 0.160757957271716 0.166742224748456 0.156985582857641 0.163557219138075 0.153747095030573 0.155301499536127 0.167702146996952 0.149648563652923 0.151552019931667 0.153777808846013 0.152741238057596 0.159147757961199 0.155206493297339 0.147983082034169 0.155911147290838 0.160383655251667 0.153565777253496 3 3|0 +|/ 21451484 21452645 21452062.889 21449180 21452998 + gene protein_coding_gene FALSE TRUE AT3G57890.1 tubulin-specific chaperone C-related similar to tubulin-specific chaperone C-related [Arabidopsis thaliana] (TAIR:AT2G42230.2); similar to Os02g0194800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046181.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57668.1); similar to Os06g0614300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058077.1); contains InterPro domain Cyclase-associated protein; (InterPro:IPR006599); contains InterPro domain Tubulin binding cofactor C; (InterPro:IPR012945) -0.078351805274789 -0.862739200946313 0.406894256283789 1 -0.246421565461255 16.7984506779659 -0.078351805274789 0.0676369294076873
AT1G14030_at 8.00755150423713 7.78935140797795 7.74891014432753 6.94404126995226 8.40040961506442 7.6058240958108 8.40519488987937 7.52384922893176 8.02446467645388 8.33818295269548 8.2480054528017 8.42839832070463 8.0359374294938 8.09836172762603 8.56031478909745 8.37135687815301 8.28146347260525 7.84182729571776 8.45921634843254 0.147991993135999 0.145405608684307 0.148302785216902 0.150733296090413 0.149659331376253 0.152190484029318 0.145675446544774 0.148388756301685 0.158981657257057 0.148688813142133 0.146223799076354 0.143981021246091 0.143055807996646 0.153049558666961 0.143055807996646 0.145148991571814 0.150193971081211 0.153624437521745 0.143055807996646 1 1 - 4805604 4806137 4805922.091 4805303 4807514 - gene protein_coding_gene FALSE TRUE AT1G14030.1 ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative Identical to Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose- bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) (RBCMT) [Arabidopsis Thaliana] (GB:Q9XI84); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) (GB:P94026); contains InterPro domain Rubisco methyltransferase; (InterPro:IPR011192); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.148718482443408 -0.862596995277569 0.40696911001412 1 -0.246537286678645 16.0567229345071 -0.148718482443408 0.250992599009414
AT1G18490_at 7.36366054408707 7.15853551706648 6.95952857968443 7.00879513909367 7.65000730520589 7.13297188247429 7.56141651677988 7.29411284159396 6.35229141028687 6.80236882606318 6.69299042157818 6.59671750330421 6.73886570973965 7.13599838655636 6.54300624662545 6.6094334261033 6.73584788304247 5.74559016302473 6.71234860317058 0.169343300418964 0.176118564373538 0.176605274644595 0.167208581510991 0.168724393530521 0.176496188325626 0.174938204122542 0.174723559994578 0.187760174822669 0.177566160654478 0.17492639219079 0.174823625395133 0.176280805515903 0.169351614512167 0.173252894815876 0.168384761995037 0.176514954867731 0.177486393614667 0.168973028474748 1 1|0 +|/ 6367797 6368593 6368227.5 6366978 6368842 + gene protein_coding_gene FALSE TRUE AT1G18490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39890.1); similar to Putative Expressed protein [Brassica oleracea] (GB:AAW81740.1); contains InterPro domain Protein of unknown function DUF1637; (InterPro:IPR012864); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) -0.0895678453053492 -0.862439124291 0.407052220592931 1 -0.246665736434047 13.8771997894167 -0.0895678453053492 0.107137519539042
AT3G20090_at 0.676233597290605 0.676023068963241 0.777166031872313 0.696567926420964 0.581779068476891 0.625422002082442 0.690253524138923 0.779587112529758 0.81578342347717 0.741360923334755 0.80712492341657 0.837076507306616 0.827772261924983 0.684777496975549 0.610759961978692 0.536058212268122 0.878484422936948 0.581795798151917 0.923450189507656 0.182170285383975 0.177499995281971 0.179062362147248 0.187539184500333 0.178660998151188 0.180036657716787 0.181765013381722 0.185363484890876 0.180659891632949 0.178752417292649 0.178178147553621 0.183536065772362 0.185895335939501 0.183514612686844 0.182855152278354 0.183151882147854 0.182424737393470 0.185767726469827 0.184028732684851 3 3 + 7017710 7018254 7017962 7015803 7018366 + gene protein_coding_gene FALSE TRUE AT3G20090.1 CYP705A18 (cytochrome P450, family 705, subfamily A, polypeptide 18); oxygen binding member of CYP705A similar to CYP705A33 (cytochrome P450, family 705, subfamily A, polypeptide 33), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20960.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0708371079187076 -0.86242935726856 0.407057362784562 1 -0.246673682583979 1.46155206325178 -0.0708371079187076 0.0221491680512707
AT2G40330_at 3.06541214960762 3.57333139142936 3.14102692948107 2.94481714884227 2.34790340204846 2.5260044837243 2.36493964315037 2.82105386052652 3.13257509444044 2.97232044686916 2.68668748977693 2.83013377700196 3.09880349829935 3.20595679215741 3.14855557688843 2.60482532142303 2.87171709705136 3.07029319227036 2.64294414002611 0.210946272569601 0.202774854566734 0.202774854566734 0.203475294347327 0.204785027201810 0.208264996377226 0.20398270939542 0.217248728741092 0.209587406895716 0.205735656258736 0.203790569881350 0.20822668285108 0.213186844116187 0.204227819080121 0.202774854566734 0.207796781914155 0.228657288172349 0.205182802918633 0.202774854566734 2 2 - 16852275 16852807 16852576.182 16851942 16853012 - gene protein_coding_gene FALSE TRUE AT2G40330.1 Bet v I allergen family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38310.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84653.1); contains domain Bet v1-like (SSF55961); contains domain no description (G3D.3.30.530.20) -0.0962856187455372 -0.86225279987542 0.407150325251665 1 -0.246817310886074 5.77584520287817 -0.0962856187455372 0.126725226677946
AT1G68010_at 12.6894003244017 12.9588643813644 13.0831104936890 13.1163416769772 13.0230886765127 13.1066641003864 13.5951916628848 13.6622267103853 13.4163661451950 13.7535595825799 13.6158985228666 13.5196583282588 13.7121230743785 13.4123320353569 13.4174591932081 13.8406987854797 13.7043031758143 13.6172649169440 13.6603385647467 0.0737160648539848 0.0738273434700516 0.0743932656580997 0.0743964939447853 0.0753875160741246 0.0770302156760285 0.0743528061293846 0.0801752635583322 0.0906170060667424 0.0751759549830345 0.0765116156028636 0.0782645107692788 0.0737160648539848 0.079868143039598 0.0775168946423008 0.0737160648539848 0.0834534172592382 0.0791239656867258 0.075806517770256 1 1|0 +|/ 25498115 25499093 25498673.3 25496881 25499651 + gene protein_coding_gene FALSE TRUE AT1G68010.1 HPR (Hydroxypyruvate reductase); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor Encodes hydroxypyruvate reductase. similar to EDA9 (embryo sac development arrest 9), NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34200.1); similar to hydroxypyruvate reductase [Bruguiera gymnorrhiza] (GB:BAB44155.1); similar to hydroxypyruvate reductase [Solenostemon scutellarioides] (GB:ABL10359.1); similar to putative NADH-dependent hydroxypyruvate reductase [Glycine max] (GB:AAO73866.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.0746201881682569 -0.86140984128442 0.407594366221005 1 -0.247502702706435 26.7618886790979 -0.0746201881682569 0.0505111372304409
AT3G15860_at 1.04822296835806 1.27002483792888 1.00312668870239 1.23246995685364 1.38983365413294 0.690607082694436 1.27982173189205 1.06161232541609 1.01435148240414 1.56442055330346 1.43941993498602 1.40169844127810 1.21636048354973 1.27256058239807 1.16712161825103 1.08574638870970 1.18833886513785 1.30587689031797 1.54477657722402 0.197936971093515 0.200440192505418 0.200531064511903 0.201091374157233 0.199555801443017 0.198244709892861 0.196366776886911 0.200217357848382 0.202112282562016 0.198511181394246 0.200679290598322 0.203544865433514 0.198135682108492 0.1978311492268 0.201630077980897 0.200854431572949 0.198720151011615 0.199961181361794 0.202283048182457 3 3 - 5361227 5361665 5361472.545 5361214 5361726 - gene protein_coding_gene FALSE TRUE AT3G15860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26090.1) -0.100393462017450 -0.861071949054161 0.407772448547313 1 -0.247777273409710 2.43904320819186 -0.100393462017450 0.138262721627085
AT1G06450_at 0.933553399379359 1.0349204137601 1.0034934837257 1.4194898568603 1.28165071652442 1.09459597112620 1.65236409022718 1.18351543820683 1.41671999297881 1.41921149106920 1.4641362210686 1.78250995321284 1.33667062146449 1.38414647263179 2.11325940872414 1.52854364649941 1.31516175305703 1.54996382555280 1.28678205715834 0.17735415856439 0.17810251411372 0.177846962987074 0.178431985356203 0.172032743639639 0.181965730420545 0.172032743639639 0.172032743639639 0.179700085492270 0.17678726352995 0.180204880911885 0.175056574212713 0.183612804423983 0.172032743639639 0.172134423041569 0.181486511360198 0.181144139935533 0.195146058299962 0.194898584685801 1 1 + 1966421 1966924 1966725.818 1965839 1967218 + gene protein_coding_gene FALSE TRUE AT1G06450.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT3G44240.1); similar to putative CCR4-NOT transcription complex subunit 7 [Oryza sativa (japonica cultivar-group)] (GB:BAD19081.1); similar to Os02g0796300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048387.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.0918901561866963 0.861023121169484 0.4077981871193 1 -0.247816943189327 2.66721633864884 0.0918901561866963 0.114548173646680
AT3G30260_at 2.26403094560376 1.85399625660009 2.03064018260383 2.05842656140108 1.87838352620589 2.20378697255991 1.87608952747524 2.07251729724133 2.24725028876401 2.52705907157514 2.47401193869638 1.77149169075282 2.18414235298499 2.19536569802511 2.37295951729683 1.84948602201308 2.26585984424502 2.42403695438299 2.39758467668299 0.137935873733881 0.133379700971383 0.136717635000258 0.135258380805792 0.137992345316934 0.134314156695724 0.138119146937862 0.139088206878493 0.134126279655858 0.133185249252640 0.135297923246958 0.133083437551388 0.135050076587648 0.139766259903544 0.135738921437051 0.135814893384574 0.136624315344202 0.134867356689033 0.136460336947644 3 3|0 +|/ 11911602 11914130 11912788.882 11911598 11915359 + gene protein_coding_gene FALSE TRUE AT3G30260.1 MADS-box protein (AGL79) similar to CAL (CAULIFLOWER), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G26310.1); similar to MADS5 protein [Betula pendula] (GB:CAA67969.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.086155644705913 -0.860866148447268 0.40788093941697 1 -0.247944461131100 4.32113420769824 -0.086155644705913 0.0968753455326424
AT2G28830_at 3.70709033115728 4.28816022328916 3.93639875416564 3.70905696464269 3.67011527925175 3.24085905269637 3.60858039812191 3.64890967363414 3.53844679352868 2.53281309532516 3.16832114595534 3.17608168093967 2.94107786755815 3.51988510416347 2.85780012643665 2.90938114086980 3.07188703783555 2.56810575161784 3.07257481437732 0.222375763879953 0.232483507164265 0.222551227897328 0.238612878400297 0.227541061676187 0.256195286293672 0.228247710738732 0.231984443164811 0.236045327972967 0.228587824469852 0.222375763879953 0.228633534501593 0.227199928762837 0.229104648101168 0.233855415048577 0.234186712379247 0.232249131613836 0.236551861690693 0.226722077064880 2 2 - 12375514 12375979 12375769.545 12375299 12377761 - gene protein_coding_gene FALSE TRUE AT2G28830.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT3G46510.1); similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) (GB:Q64HA9); similar to Os03g0275900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049711.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.0977275315082553 -0.860486454418493 0.408081152378163 1 -0.248252825424194 6.76340252611942 -0.0977275315082553 0.131249597955871
AT4G24260_at 1.99134389525246 2.43477755127077 2.49250685092616 2.94378324102790 2.0472768928664 2.48264768423149 1.73163366652811 2.09738076725781 2.49310408374375 2.94644254787814 2.26832902349291 2.90354393394131 2.20923777835162 2.35921920509668 2.48461943551703 2.66177611732412 2.91820515949084 2.83639292984753 2.96195072167436 0.231054456880802 0.234616616047647 0.232605233794411 0.232489071168903 0.233930496365661 0.232734443984746 0.234302891517237 0.239294775087649 0.236619815284951 0.240877937996872 0.243103545143508 0.23529664357565 0.244242130603122 0.231054456880802 0.234922465506321 0.232668904108686 0.24017199700323 0.247532002375611 0.235902274834159 4 4 - 12577915 12578485 12578238.909 12577881 12580143 - gene protein_coding_gene FALSE TRUE AT4G24260.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 21 (EC 3.2.1.4) (Endo-1,4-beta glucanase 21) (KOR3) [Arabidopsis Thaliana] (GB:Q9STW8); similar to KOR1 (KORRIGAN), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49720.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G65610.1); similar to endo-1,4-beta-glucanase [Populus tremuloides] (GB:AAS45400.1); similar to cellulase; endo-1,4-beta-D-glucanase [Brassica napus] (GB:CAB51903.1); similar to endo-1,4-beta-glucanase [Gossypium hirsutum] (GB:AAQ08018.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) 0.103718013651516 0.860372781948783 0.408141104970928 1 -0.248345120431151 4.96800110149423 0.103718013651516 0.147208647941267
AT2G27240_at 0.879527697346192 0.99329825200827 0.882668055961338 0.696918402721526 0.350007744902745 0.96513985258694 0.789351227406865 1.00262505908317 0.805652738023 0.838893815952015 0.741285162124914 1.09777162361844 1.15643058319326 0.676448525072106 0.976075538857724 1.07873672189712 1.02517286888034 0.761107281111082 1.15489229174610 0.195582989682139 0.202792403833082 0.206928425271259 0.195417680637436 0.197468717327747 0.20228900488134 0.200726542380341 0.198558292270329 0.203871291279877 0.195840003856748 0.200623317594889 0.195233184924191 0.199591144638125 0.198854419548736 0.201330581073801 0.202762854297710 0.203340424582894 0.206350644387594 0.198061311006238 2 2 + 11668651 11669285 11669086.727 11666657 11669486 + gene protein_coding_gene FALSE TRUE AT2G27240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08440.1); similar to putative aluminum activated malate transporter [Brassica napus] (GB:BAE97280.1) -0.0932673943653274 -0.860240960787627 0.408210636966955 1 -0.248452137877794 1.75607944650284 -0.0932673943653274 0.118806773321575
AT2G21990_at 1.9586817375097 1.68542816041556 1.74684108687799 1.87210145696176 1.37524486899183 1.58766263230708 1.62604872078704 1.53189844565209 1.85983090107456 1.93372787298085 2.05102807975931 2.06747469715743 2.43130275386988 1.89119045807725 1.65713994980818 2.00468508656474 2.20108494942360 2.34101490627884 1.81718689674510 0.207517353078946 0.207564451134678 0.212996900211783 0.207922366969526 0.203023129955878 0.210812018242657 0.203593928440156 0.211413598819598 0.208714191141346 0.208460680488994 0.206212059923664 0.201033612294809 0.203942775997647 0.208210897608328 0.206816797178152 0.202327678676624 0.207991954197229 0.210912216946026 0.203055474474302 2 2 - 9366740 9367194 9366951.182 9366436 9367744 - gene protein_coding_gene FALSE TRUE AT2G21990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39610.1); similar to Plant-specific domain of unknown function 3588 [Medicago truncatula] (GB:ABE89410.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460); contains InterPro domain Cytokine, IL-1 related; (InterPro:IPR008996) 0.0776573991887323 0.859935465124399 0.408371808422228 1 -0.248700096517677 3.64842022221333 0.0776573991887323 0.0657478506691476
AT4G21950_at 2.08759886798954 2.03516705134875 2.66066504112294 2.71655526239395 1.94262865874560 2.24197446039640 1.80574989611317 1.93208102508942 2.56878247836056 2.47338892694118 2.07191303103084 1.79280296843850 2.19142886541407 2.13670091553024 1.71676484591951 1.92343969282250 2.48462941758888 1.59108207854689 1.74427528982422 0.171437829203325 0.17113138713884 0.176594179011285 0.175336144316419 0.169767309858069 0.178186411550235 0.174384139092112 0.172005127540248 0.175004898565376 0.169978233684520 0.171543741590893 0.173754363222616 0.176970549099932 0.174691294937208 0.172901082700793 0.173255187339259 0.180581823777810 0.17953430855364 0.178216589827964 4 4|0 +|/ 11644230 11644592 11644521 11644230 11644617 + gene protein_coding_gene FALSE TRUE AT4G21950.1 unknown protein 0.0758764870328055 0.859520300608076 0.408590907671346 1 -0.249036947161676 4.30317459554335 0.0758764870328055 0.0577702698567616
AT3G63050_at 1.98249946064100 2.20844099676059 2.87063645382433 3.04758479755897 1.499435889288 1.63898111267505 2.04232710524223 2.37788989769562 2.05523516955770 2.35637212496519 2.11470559542483 2.22869196290147 2.17457713135871 2.46147650361626 2.4628978715322 2.17100567112764 2.20867971312606 2.3435416529483 2.2475111776946 0.177825442477496 0.176361794380559 0.184417301314588 0.181841884274961 0.175873513127192 0.18106907132578 0.181977271134898 0.174965184711974 0.185174609412776 0.174965184711974 0.183874348588127 0.177708470461106 0.178314652548451 0.184962129156109 0.180985620715258 0.175120780339172 0.182028455158388 0.179313896647778 0.184286450502749 3 3 - 23308948 23309264 23309091.636 23308866 23309364 - gene protein_coding_gene FALSE TRUE AT3G63050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G48075.1) 0.0811805268001648 0.859217139271799 0.408750948784092 1 -0.249282833472045 4.45367604929086 0.0811805268001648 0.0801367457289373
AT1G15850_at 1.33021012147989 1.21500189221216 1.20011275644286 1.05004864640032 1.05349789024617 1.35466975127237 1.30307413188035 1.46479640343969 1.40320232303539 1.82531307548739 1.57330781164193 1.52318191856628 1.71707842605397 1.46406419171549 2.09464306594854 1.43106301589887 1.74192879981995 1.47765716456294 1.63190584902282 0.195355215318718 0.198367370280721 0.201042503370873 0.199608557850656 0.190743684243198 0.207126575466409 0.200400843896512 0.194372605172461 0.199613310444468 0.196935233524691 0.190292058069350 0.195156376870468 0.199529091628187 0.195687649383287 0.193921804444557 0.202527071602282 0.215574379741291 0.190292058069350 0.190292058069350 1 1|0 -|/ 5453258 5454047 5453540.222 5453240 5454083 - gene protein_coding_gene FALSE TRUE AT1G15850.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G80670.1); similar to Os08g0176800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061119.1); similar to RNA export 1 [Nicotiana benthamiana] (GB:ABG29731.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.0779816213675626 -0.858723968087097 0.409011388587829 1 -0.249682671875713 2.87042943173399 -0.0779816213675626 0.0676134019700663
AT3G10970_at 9.35714193985955 9.30898824109481 9.36282871403637 9.24367855360188 9.72052838348122 9.23366428548319 9.89821236060739 9.8092546671337 9.2293639779394 9.29947152005943 9.2432677535717 9.37998957684167 9.14799190891376 9.3118586032874 9.1966362502578 9.60897986809973 9.17496796664964 9.11184674253064 9.17792283090513 0.124441563313243 0.124650733407569 0.127808630068059 0.129445691086178 0.122678188049869 0.133875395342181 0.127130671673312 0.125052023884748 0.130078327580308 0.126997819933141 0.119938671404413 0.119938671404413 0.127070816835028 0.134922968261801 0.122210349019513 0.119938671404413 0.131146922059321 0.128832937329913 0.130712503383051 3 0|3 /|- 3433285 3433952 3433632.429 3433078 3436284 - gene protein_coding_gene FALSE TRUE AT3G10970.1|AT3G10970.2|AT3G10970.3 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G11570.2); similar to Os05g0168300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054753.1); similar to genetic modifier [Zea mays] (GB:AAG17894.1); similar to putative genetic modifier [Zea mays] (GB:AAL75477.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834)|similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G11570.2); similar to Os09g0569100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063975.1); similar to Histidine acid phosphatase; HAD-superfamily hydrolase subfamily IA, variant 3 [Medicago truncatula] (GB:ABE92120.1); similar to Os05g0168300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054753.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.083434046944403 -0.858522069408063 0.409118042230343 1 -0.249846304001208 18.7455513648641 -0.083434046944403 0.0884892751375051
AT3G02125_at 0.556792855803858 0.606717933051951 0.617883218417039 0.753519891899713 0.70060748917809 0.419952008676888 0.71389287119893 0.638015844416523 0.44099006982915 0.588515871097802 0.537447225168432 0.862421438090659 0.880969574699042 0.0383210632321087 0.81705387232027 0.481636922850759 0.275622374255883 0.527103174201554 0.158017988745781 0.228959354681387 0.215082752260170 0.217709809164342 0.212431177005262 0.216608456164383 0.213926006688072 0.209198749105305 0.214230851756612 0.220219752936568 0.213422483601224 0.217281039173637 0.215624366623679 0.214467409116573 0.223101966747619 0.212471705231953 0.208986181787119 0.220775136973157 0.219887421031062 0.212575669110728 3 3|0 +|/ 378914 379349 379150.2 378212 379389 + gene protein_coding_gene FALSE TRUE AT3G02125.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15560.1); similar to cell wall-anchored protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (GB:YP_300225.1) 0.0754332108182724 0.858159231283995 0.409309760185119 1 -0.250140288666431 1.100129396827 0.0754332108182724 0.0561867326675052
AT4G09840_at 4.21898646993821 4.30415229260751 4.36312432964763 3.86496776187028 4.13442796216718 4.28341586636656 4.45649674899282 3.97123180688021 4.5875112406316 4.26928467193176 4.53936978146631 3.69524872912713 4.46698562757856 4.51735307323427 4.12714211007348 4.17215938813075 4.83081180220097 4.56548973275116 4.57610142493785 0.179979261044352 0.175979148291084 0.182419300416697 0.17960525489304 0.187295956754528 0.183663635322711 0.193838482505188 0.193154931151519 0.184615532857331 0.179312751390714 0.181125278912907 0.178298254924706 0.178820817862925 0.179101996508575 0.181166587890316 0.179837267774513 0.186260502077145 0.183571100050451 0.178307772596201 4 4 - 6191074 6191241 6191160.545 6190785 6191661 - gene protein_coding_gene FALSE TRUE AT4G09840.1|AT4G09840.2 unknown protein -0.0947726324275902 -0.8575112999031 0.409652268801278 1 -0.250664999353742 8.62057664301083 -0.0947726324275902 0.123959895592085
AT1G21860_at 1.19370595581856 1.38878543570036 1.47337615447783 1.57721004606693 1.11583469634883 1.27046533267421 0.83419665879274 0.939211385357423 1.2575855432713 1.64381572340614 1.2131920275792 1.35748221026236 1.39745165367252 1.46743846924246 1.73291733785188 1.11836888953784 1.23389666812047 1.59264368550179 1.63177968301885 0.182953282108429 0.182851868065114 0.183327608180991 0.186365552135073 0.191459068803219 0.190095847207775 0.188327755117710 0.184861878476203 0.190357496467444 0.186830041469371 0.206403520541912 0.185809713386328 0.185328682667544 0.181831913948511 0.191846564720481 0.185111085531462 0.180116145557885 0.18156244162612 0.180116145557885 1 1 - 7671026 7671890 7671544.364 7671017 7674204 - gene protein_coding_gene FALSE TRUE AT1G21860.1 SKS7 (SKU5 Similar 7); copper ion binding / oxidoreductase similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS5 (SKU5 Similar 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G76160.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.0741801248151576 0.857221611925342 0.40980546625405 1 -0.250899485040346 2.67421530029786 0.0741801248151576 0.0500891491828883
AT3G22480_at 7.11750202841374 7.0506529655239 6.66072079709201 6.83760870732822 6.59677241141227 6.87374465809929 6.20469267020415 6.76729337850842 6.42047169040673 6.07788903112726 6.30441718382013 6.07364576350316 6.1375063809995 6.03646854004135 6.31368321945402 6.23122108816135 5.97226831157017 5.90613194387848 6.28531335420342 0.178028855924883 0.176548246517866 0.178244792652301 0.185679982773397 0.174628836589884 0.184872399951506 0.184973089095872 0.179770012074431 0.195308122317655 0.174968073168331 0.181436979713934 0.178934722695751 0.181601979267846 0.175166984820869 0.184170826672747 0.174256852447757 0.185222328095666 0.186471534468516 0.175234472444038 3 3 + 7969094 7969509 7969260.636 7968085 7969712 + gene protein_coding_gene FALSE TRUE AT3G22480.1|AT3G22480.2 prefoldin-related KE2 family protein Identical to Probable prefoldin subunit 2 [Arabidopsis Thaliana] (GB:Q9LJ98); similar to Os11g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068114.1); similar to hypothetical protein DDBDRAFT_0189393 [Dictyostelium discoideum AX4] (GB:XP_647151.1); similar to Os12g0485800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066784.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) -0.0910652525817777 -0.85709039942405 0.409874868963661 1 -0.251005671463877 12.9551946999932 -0.0910652525817777 0.113346354484683
AT1G26680_at 0.377375324284113 0.638643169804034 0.706513995347747 0.525282559926866 0.816087825495073 0.807985046818693 1.14130665652082 0.754952043766855 0.388950872166547 0.821704758989641 1.04671023832826 0.712492582298159 1.01185511027972 0.663048566453995 0.763910730772993 1.02625053056132 1.07624443206485 1.05092405905794 1.00751305957804 0.204728409253318 0.197733986589122 0.202698997439331 0.201416324120544 0.199149398416034 0.197534938371898 0.198434466770599 0.201408051019131 0.212665561559451 0.199482678501787 0.203837328815579 0.197534938371898 0.203763481145967 0.204678433720488 0.203577110308980 0.199984008048600 0.198469113503411 0.201679645080151 0.201391676640791 1 1 + 9222786 9223443 9223107.364 9219456 9223636 + gene protein_coding_gene FALSE TRUE AT1G26680.1 transcriptional factor B3 family protein similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT2G24650.1); similar to reproductive meristem gene 1 [Brassica oleracea var. botrytis] (GB:AAC18082.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.0827190129761096 0.85668676690418 0.410088413847382 1 -0.251332231373998 1.55017787514814 0.0827190129761096 0.086603660704624
AT2G42070_at 8.73527133390575 8.90927543275466 8.87171857218345 8.68111476651756 9.26194156435435 8.88452388387043 9.39432007290322 9.06822123210244 8.5178133833739 8.13534971607716 8.63502522552905 8.79137686688185 8.53000575602074 8.79894486712214 8.66715387154348 8.84072305656366 8.59822852167184 8.37253718492855 8.48875225700663 0.145694855947724 0.145356422003404 0.137760726145427 0.141584110542251 0.139583328262672 0.141949365333823 0.138190622769125 0.146094945816212 0.14092767125698 0.143125827366399 0.135639389959213 0.135836904100385 0.144415067038407 0.134664941046072 0.148213501800072 0.138490421446412 0.153846839513321 0.140214547572804 0.143325715955143 2 2|0 -|/ 17556749 17557714 17557134 17556169 17558253 - gene protein_coding_gene FALSE TRUE AT2G42070.1 ATNUDT23 (Arabidopsis thaliana Nudix hydrolase homolog 23); hydrolase Identical to Nudix hydrolase 23, chloroplast precursor (EC 3.6.1.-) (AtNUDT23) (NUDT23) [Arabidopsis Thaliana] (GB:P93740;GB:Q8LAH1); similar to hypothetical protein Tbd_0747 [Thiobacillus denitrificans ATCC 25259] (GB:YP_314505.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.0858318227225172 0.856680017291068 0.410091985424243 1 -0.251337691035900 17.4932422927916 0.0858318227225172 0.097187073440062
AT1G70570_at 8.01840030170715 8.13873190181252 8.20549232615712 8.44067974782853 8.18355789917451 8.14626650577735 7.9960519005511 8.29030938817149 7.61642486355878 7.68017025460879 7.47301583879318 7.71135602519116 7.51517624287961 7.69652317416442 7.44671804688454 7.90481780252067 7.78786513111697 7.26964219082489 7.43640891398397 0.176945104048035 0.17527246187692 0.177669857153058 0.181024918931366 0.17527246187692 0.188681932952763 0.18605792276218 0.181694577917739 0.183626891678815 0.186843493017609 0.178030095061350 0.176817586317078 0.183319331520913 0.182178370885931 0.182420545622159 0.17527246187692 0.183518241304780 0.180898399210408 0.177571422976244 1 1 + 26614299 26615378 26614803.909 26612290 26615947 + gene protein_coding_gene FALSE TRUE AT1G70570.1 anthranilate phosphoribosyltransferase, putative similar to Os02g0131200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045789.1); similar to glycosyl transferase, putative [uncultured bacterium 439] (GB:AAR37657.1); contains domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain (SSF52418); contains domain Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain (SSF47648); contains domain GMP SYNTHASE-RELATED (PTHR11922); contains domain ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (PTHR11922:SF1); contains domain no description (G3D.3.40.1030.10); contains domain no description (G3D.1.20.970.10) 0.0780485212517807 0.856538279367792 0.410166991326648 1 -0.251452332155110 15.7665899050295 0.0780485212517807 0.0687379865430485
AT1G25360_at 2.71723764225719 2.71386475642884 2.97035314585869 2.86675247426328 2.57906963198787 2.71319060543936 2.29595634232784 2.81595015717828 2.68590131556724 2.38210157810280 2.44067413015794 2.00015418905520 2.6569633416393 2.60019735543660 2.5818744268366 2.45216534625623 2.76515822136617 2.72335388578059 2.44418803431900 0.217672285519984 0.221122648887671 0.228048745001921 0.22190731665058 0.213943653373006 0.232216466644448 0.217087978662222 0.215977279013697 0.231218639512567 0.219752755034147 0.213579261408261 0.216258166774712 0.228068571129946 0.223504307052518 0.232907871155682 0.213579261408261 0.220908768571603 0.220144839846517 0.221483203519931 1 1 + 8896227 8896758 8896482.091 8894415 8896787 + gene protein_coding_gene FALSE TRUE AT1G25360.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to pentatricopeptide (PPR) repeat-containing protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83258.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0850466046211661 0.856516642389109 0.410178442159548 1 -0.251469831233947 5.22486247183221 0.0850466046211661 0.0946478465227507
AT2G47160_at 5.34132543456513 5.83412844202955 5.29550996385466 5.69375751153033 6.00292628580326 5.67614059521254 6.46060239151935 7.13581764677543 5.80777721487894 6.37696970209906 7.80086957945446 5.88164409544718 6.5280154061314 6.92407642020138 5.85369500494563 5.80736123824456 4.99629928377423 6.83166961735788 5.8948424267781 0.269483306741173 0.2569930960877 0.288042425630532 0.283315366785317 0.2569930960877 0.27338132093797 0.264979789569630 0.257009418594349 0.288794829118797 0.269278199215949 0.274622791618767 0.271829318025977 0.2569930960877 0.257078327054977 0.2569930960877 0.2569930960877 0.278847349862304 0.268908174029021 0.262015737695121 2 2|0 -|/ 19365045 19365680 19365352.667 19364548 19368217 - gene protein_coding_gene FALSE TRUE AT2G47160.1|AT2G47160.2 BOR1 (REQUIRES HIGH BORON 1); anion exchanger|BOR1 (REQUIRES HIGH BORON 1) Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Identical to Boron transporter 1 (BOR1) [Arabidopsis Thaliana] (GB:Q8VYR7;GB:Q9SHX0); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G62270.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G06450.1); similar to HCO3-transporter [Medicago truncatula] (GB:ABE78978.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531)|similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G62270.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G06450.1); similar to HCO3-transporter [Medicago truncatula] (GB:ABE78978.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) -0.112230420089807 -0.856230548479126 0.410329870658212 1 -0.251701176050358 12.1072678398846 -0.112230420089807 0.169925267595343
AT2G32660_at 2.27983800600015 2.04772576585255 2.31766054205617 2.04318785812148 2.00711974529003 2.06628775342863 1.82216086750322 2.06570954412192 2.11088931386521 2.36483091058521 2.03409225949102 2.17662826474960 1.93969782894183 1.70151015146171 2.35041637961637 1.90980771430771 2.27589543404609 1.96462068019835 2.29905057667399 0.210098876348349 0.214746790738627 0.210943865471941 0.212228188586927 0.219686206475261 0.217846482022549 0.211850842060578 0.210098876348349 0.217862468947962 0.210098876348349 0.214029469574023 0.217032729584610 0.215864162546245 0.214368661601343 0.210488317388641 0.210098876348349 0.219016557999602 0.21312756661129 0.211201611181081 2 2 - 13860975 13861517 13861274.636 13860835 13863189 - gene protein_coding_gene FALSE TRUE AT2G32660.1 disease resistance family protein / LRR family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33020.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33060.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33050.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.0797339578759661 -0.855814304257731 0.41055025503359 1 -0.252037645367603 4.23238152170163 -0.0797339578759661 0.0758343144832633
AT4G18850_at 1.19579668715454 1.21021923446912 1.08606343804976 1.06296015233311 1.04526195458405 1.32370802510015 0.952718181681153 1.38953798771827 1.03450592522737 1.59090539463029 1.46169235102625 1.05429676606075 1.23803995258845 1.09864187501630 1.31019298222135 1.27325944557414 1.51026013380108 1.34472529470550 1.56209141062442 0.203572401780877 0.200311946672917 0.207248136413492 0.202636045039054 0.197767886064964 0.199408074349627 0.201010673060594 0.200608144152475 0.215005583342978 0.201742324895712 0.201080427056803 0.199423308642964 0.202810688914093 0.206470091340918 0.202476767163589 0.208594626094431 0.202720061242585 0.203842412471506 0.202165085922236 4 4 - 10342082 10342229 10342155.727 10342074 10342253 - gene protein_coding_gene FALSE TRUE AT4G18850.1 unknown protein -0.0835076368044003 -0.855488421464903 0.410722852775468 1 -0.252300972713625 2.49939462944540 -0.0835076368044003 0.0897694323983995
AT2G14910_at 11.4349503876599 11.6007673242735 11.9442459278772 11.8297499635157 12.1913227133875 12.0712204079174 11.9618569974031 12.0368037399162 12.1292226003159 11.8174637575005 12.1360033147064 11.5508350295461 11.9155811732584 11.8104753648465 11.5924843039341 12.0538429927987 11.8529384278566 12.0547597926174 11.9812110955569 0.0652409537943258 0.0652409537943258 0.0652409537943258 0.068143275993029 0.0652409537943258 0.0678996465637336 0.067051805390653 0.0653554955370504 0.074463850636426 0.0655192433140297 0.0660659529069848 0.0658385434289876 0.0675039101068949 0.0687496767472363 0.0678667218802203 0.065877692658333 0.0712983857722595 0.0686876560271014 0.0669797920505013 2 2 - 6414041 6414725 6414387.545 6413558 6416234 - gene protein_coding_gene FALSE TRUE AT2G14910.1|AT2G14910.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14970.1); similar to seed maturation protein PM23 [Glycine max] (GB:AAF21309.1) 0.0727196865078561 0.85500778242289 0.410977504137522 1 -0.252689191579234 23.8072801166121 0.0727196865078561 0.0426172049210543
AT3G42950_at 5.02239610348442 4.51597990801511 4.53713082735899 4.66441159442571 4.74743138804517 4.81236422956976 5.41412133454315 4.65369600745188 4.45107974656921 4.37716645660178 4.94472360836296 5.15292938764927 4.52764677531999 4.92337891854313 5.0416820918158 4.42774974765753 4.99192630904335 4.84120640267592 4.45883725226059 0.179721617867647 0.173762997837783 0.183598974969759 0.173762997837783 0.190795011692844 0.17773942578905 0.177607947691017 0.178123818442495 0.178367253310546 0.182771649234955 0.179129701110493 0.176060931129197 0.184755001286898 0.173762997837783 0.178603118919781 0.173901914162463 0.183523321413994 0.183995966482194 0.178976729319838 3 3|0 +|/ 15028141 15028690 15028439 15026128 15029059 + gene protein_coding_gene FALSE TRUE AT3G42950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G19170.1); similar to Os09g0439400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063274.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE90955.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.108081879066282 0.854990824575901 0.410986490671218 1 -0.252702885224871 9.43865803591712 0.108081879066282 0.160028384119068
AT3G52110_at 1.50836221715057 1.81644849516792 1.91767089839656 1.80605785732037 2.10745135008206 1.91798480575343 2.64007593495873 2.20777710931930 1.70946758191705 1.89325032890226 2.36486640745203 2.67504581981636 1.92429927581804 1.78172795278893 2.61341557668599 1.68261267399020 1.76325020749474 2.40003274296647 2.01353013357140 0.217481667667777 0.217481667667777 0.219958573513887 0.221720879047111 0.229500072703230 0.228837961479564 0.227990479507978 0.223433450613074 0.218777174951440 0.218801209369742 0.222425133855737 0.22202670506646 0.227253536791565 0.229477955291499 0.240485332185023 0.217481667667777 0.230807390813541 0.223320505058203 0.220718991870579 3 3 - 19334903 19335713 19335278.091 19334750 19336646 - gene protein_coding_gene FALSE TRUE AT3G52110.1 similar to Os03g0174200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049125.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93769.1) 0.0863494697009987 0.854953364885525 0.411006342294047 1 -0.252733133499624 4.0015980903137 0.0863494697009987 0.0994356002943414
AT3G28020_at 2.58754535026326 2.56290090015895 2.68012189800353 2.63585373157245 2.14066061526504 2.58351166614455 1.79961183587464 2.30599256058479 2.03531453639690 2.28011516150776 1.91463824223136 1.98859234142547 2.49449764966919 2.02147193811216 2.05212599149864 1.98226575072032 2.52274392000019 2.28466644428774 2.19371398772410 0.286571507101682 0.287454789628272 0.286906762629708 0.29540972797247 0.29006269739031 0.286571507101682 0.292750463503978 0.286571507101682 0.297539361419179 0.286571507101682 0.292885447209114 0.293733690641324 0.293449201336680 0.286571507101682 0.29558129100025 0.286571507101682 0.294824623102475 0.286571507101682 0.295351513133508 3 0|3 /|- 10419409 10419848 10419598 10419143 10420386 - gene protein_coding_gene FALSE TRUE AT3G28020.1 similar to ATP binding / DNA binding [Arabidopsis thaliana] (TAIR:AT3G48770.1); similar to Os11g0514100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067964.1); similar to Os11g0514000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067963.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93879.1) 0.0919675194464314 0.854766648327538 0.411105301737858 1 -0.252883887913722 4.57569474304309 0.0919675194464314 0.116745286504676
AT4G17380_at 0.409432560218362 0.369860459981434 0.740016095074734 0.564943267187316 0.52262474373644 0.430205413167798 0.934727027363019 0.734896282023708 0.64568173712157 1.10500039408984 0.939696549251667 0.599907832261435 0.790659872609949 0.585819732724819 0.613310802375854 0.60249056177101 0.595512446381503 0.790957270343615 0.618118638441379 0.201784904607778 0.208213982800215 0.197899068221032 0.201021304795257 0.194890816497795 0.193935608306002 0.200252202910022 0.193935608306002 0.211562886917841 0.197162347367791 0.198008331160305 0.197072398407099 0.202935596706241 0.199568227053642 0.194346851182806 0.198572484916907 0.205289315256285 0.206782328398653 0.199239161681772 4 4|0 +|/ 9712912 9713745 9713360.5 9708696 9714147 + gene protein_coding_gene FALSE TRUE AT4G17380.1 MSH4 (MUTS-LIKE PROTEIN 4); ATP binding / damaged DNA binding Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination. similar to MSH2 (MUTS HOMOLOG 2), ATP binding / damaged DNA binding [Arabidopsis thaliana] (TAIR:AT3G18524.1); similar to Os07g0486000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059660.1); similar to PREDICTED: similar to MutS homolog 4 (E. coli) [Gallus gallus] (GB:XP_422549.2); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain MutS IV; (InterPro:IPR007861); contains InterPro domain MutS III; (InterPro:IPR007696) -0.0737937878455033 -0.854698232818235 0.411141565882014 1 -0.25293911927417 1.32803555110206 -0.0737937878455033 0.0491579145118086
AT3G47120_at 7.21707080723661 7.1376083792108 7.35404523560368 7.1683756631752 7.38619786422953 7.15271484727643 7.29500136032115 7.05196591202722 6.9180953283148 7.31602868320065 7.23205034172414 7.2451407021136 7.01310685417104 7.18211683053732 7.07307726625212 7.40015208467563 7.56776600025072 7.11288763300223 7.25430606237517 0.162226165452324 0.162470934470814 0.161886566889025 0.163581238633629 0.172694111533972 0.165892601761258 0.167093847978761 0.164271686596291 0.174068063124023 0.174183249805847 0.170791929877582 0.16244061339151 0.161176605129166 0.173950855622930 0.168009869798432 0.168077217665497 0.166188984899993 0.180029804384474 0.164034491005497 3 3 - 17362416 17362993 17362672.364 17362126 17363807 - gene protein_coding_gene FALSE TRUE AT3G47120.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G19960.1); similar to Os03g0826400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051763.1); similar to RNA binding motif protein, X-linked 2 [Mus musculus] (GB:NP_775552.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0776994886664539 0.854638085055751 0.411173449438466 1 -0.252987672983657 14.4159211279956 0.0776994886664539 0.0679926501687121
AT1G36940_at 2.20526800588985 2.41137134492768 1.96469444065316 2.08335099424483 1.52725692003689 2.39717463122338 2.10598797673929 2.17679119410529 2.6643204998409 2.11351385257816 3.9875802428467 2.51371728294448 2.92130389464501 3.12297164055822 3.21471914658176 2.72067875191198 2.19492821004884 3.17170475531606 2.83010277092449 0.190049327563163 0.188349033784718 0.188921891803114 0.201820628443023 0.189129094403637 0.189529315856223 0.191961168813003 0.190510556492041 0.192109162955613 0.191004617328445 0.195195931793238 0.189776725742299 0.187642700951859 0.195701600471229 0.188855094735301 0.191395756940009 0.187642700951859 0.201811271271666 0.190092452783896 1 1 + 14006635 14007066 14006794.545 14006344 14007352 + gene protein_coding_gene FALSE TRUE AT1G36940.1 unknown protein 0.106618032808078 0.854307667669736 0.411348629362348 1 -0.253254346587683 4.86745170433812 0.106618032808078 0.156547805072414
AT1G13180_at 5.17795588883877 5.64304186198135 5.10468446377859 4.87226118574782 5.34455555072833 5.0111456401293 4.21263618365416 4.20324446977064 4.7569847039471 4.38401519165483 4.75901948555478 5.22745832974472 4.18210106117831 4.71062570632679 3.86604467483879 4.20122358470163 3.22803950529737 4.12317456066008 4.01069248302898 0.239279117013328 0.23737463978459 0.242012585820566 0.239288567592772 0.238361203832213 0.248134617689395 0.239654477718757 0.237947957627943 0.242407426455281 0.23737463978459 0.244725903251986 0.23737463978459 0.241160406535148 0.250777840824581 0.251225296458189 0.23737463978459 0.242043680274058 0.238453221533183 0.242226482851204 1 1|0 +|/ 4496829 4498164 4497599.6 4495025 4498466 + gene protein_coding_gene FALSE TRUE AT1G13180.1 DIS1 (DISTORTED TRICHOMES 1); structural constituent of cytoskeleton Mutant has defect in trichome cell expansion and actin organization resulting in a distorted trichome phenotype. similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to actin-related protein ARP3 [Physcomitrella patens] (GB:CAL22910.1); similar to Os02g0596900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047323.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.088627756514479 0.854130420523608 0.411442622698792 1 -0.25339736265442 9.28174481711934 0.088627756514479 0.106899035146275
AT4G22890_at 12.5394771791575 12.6416054165356 12.8967973958394 12.8132565920624 12.9558421763886 12.8381867885021 13.3876851539288 13.3305834501209 13.1808916787473 13.3866238633596 13.6110201079199 13.5494134498515 13.5533062040128 13.4794846786598 13.3526016849058 13.6693728606735 13.51216474512 13.5510081282331 13.3133652926660 0.0661975561282108 0.0648588215692273 0.0641137465053652 0.0697900887974577 0.0656993161358778 0.0654689317240017 0.0670054855445137 0.0661468150058894 0.0700691545200429 0.0649280023968562 0.069205573685695 0.0636327280362302 0.064725246964375 0.069239074881665 0.0669249352882164 0.0636327280362302 0.0736164393914508 0.0648880696715678 0.0650425681138343 4 4|0 +|/ 12008528 12009139 12008799.75 12006997 12009531 + gene protein_coding_gene FALSE TRUE AT4G22890.1|AT4G22890.2|AT4G22890.3|AT4G22890.4|AT4G22890.5 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11960.1); similar to Os03g0857400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051955.1); similar to Os08g0526300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062297.1); similar to hypothetical protein OSJNBa0003M24.13 [Oryza sativa (japonica cultivar-group)] (GB:AAQ56398.1); contains domain no description (G3D.2.20.25.10); contains domain Zinc beta-ribbon (SSF57783) 0.0711762378800787 0.85401620264452 0.411503199623917 1 -0.253489508466129 26.3396409827401 0.0711762378800787 0.0321493638514629
AT1G67320_at 3.41707950675628 3.22287654943503 4.00582767450739 3.64013553598873 2.47122989799891 2.34988551670757 4.09117739739828 3.8819342255884 3.15983233203229 3.53177531023627 3.50460767720166 4.30520296868479 3.23570458742757 3.34489368484116 4.32834706231997 3.19216066197321 3.01663795272663 3.59617607786977 2.88398625993502 0.270628497197967 0.272902847165447 0.276594765248267 0.273605583568944 0.271126405018598 0.280152576227190 0.270583161557752 0.282480478372511 0.288674530301057 0.276403659878534 0.277903383007186 0.277787826025998 0.281544204207248 0.278248786100424 0.274076769268578 0.272523310647897 0.280039537731429 0.276483587556548 0.274591564281556 1 1|0 -|/ 25209191 25210722 25209865.571 25209055 25212635 - gene protein_coding_gene FALSE TRUE AT1G67320.1 DNA primase, large subunit family Identical to Probable DNA primase large subunit (EC 2.7.7.-) [Arabidopsis Thaliana] (GB:Q84WJ2;GB:Q8LFN6;GB:Q9FYG1); similar to Eukaryotic-type DNA primase, large subunit [Medicago truncatula] (GB:ABE92589.1); similar to Os07g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059432.1); contains InterPro domain Eukaryotic-type DNA primase, large subunit; (InterPro:IPR007238) -0.0814477817155537 -0.853913954296842 0.411557433483325 1 -0.253571988762776 6.7636837721468 -0.0814477817155537 0.0829855654680983
AT1G26480_at 0.8520701700332 1.01444083137135 0.808291349623058 0.894455600335833 1.03232860928181 0.892896649037928 0.966179096036107 0.947887983471647 1.4046682744338 1.47114884864249 1.0353530036502 1.17180812278965 1.14513016039010 1.41173773595394 1.39941973381198 1.26095715414185 1.63860756307774 1.60811669809275 1.44476713771693 0.220125482380381 0.218525364070222 0.218748893825898 0.218966126494154 0.223212100190928 0.220579871574366 0.21965948002851 0.220807612609074 0.230985038075105 0.224543893607497 0.224266597541017 0.222116565352602 0.238768874285325 0.221699947316788 0.21964197674841 0.218525364070222 0.218525364070222 0.228221295013357 0.228972565360605 1 1|0 -|/ 9156796 9157446 9157170.6 9156316 9157937 - gene protein_coding_gene FALSE TRUE AT1G26480.1 GRF12 (GENERAL REGULATORY FACTOR 12); protein phosphorylated amino acid binding 14-3-3 protein GF14iota (grf12) Identical to 14-3-3-like protein GF14 iota (General regulatory factor 12) (GRF12) [Arabidopsis Thaliana] (GB:Q9C5W6;GB:Q9FZD3); similar to GRF9 (General regulatory factor 9), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT2G42590.3); similar to 14-3-3 protein [Medicago truncatula] (GB:ABE90944.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.0722274751338153 -0.853834293633297 0.411599689898363 1 -0.253636242417348 2.313111798692 -0.0722274751338153 0.0400517237247624
AT4G35140_at 4.70856369365663 5.42513341180947 4.99934499671737 5.14168649033074 4.93004397574073 4.90634583077671 5.66333923537585 5.06101713142395 4.89331391054287 5.01810271024184 4.78680839051304 4.55787796260945 4.79158527231952 5.20029208747607 4.69663664884339 5.12309355190253 5.43187589757222 4.86130810070824 4.87839285864731 0.270096573891787 0.265505314777948 0.277874929393085 0.265505314777948 0.273489461752601 0.266980989645639 0.27489509880486 0.275656552061635 0.278727779200675 0.278317701448909 0.270946954736104 0.265505314777948 0.268275062083323 0.269545727796497 0.27759131373753 0.267292054543229 0.268726877627423 0.277714035613031 0.265505314777948 4 4 - 16724920 16725115 16725013.125 16723726 16726641 - gene protein_coding_gene FALSE TRUE AT4G35140.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G38480.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAM34535.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.109454899413021 -0.853600768529234 0.411723581459082 1 -0.253824572027365 10.0349949617975 -0.109454899413021 0.163908145474878
AT2G29600_at 2.09533807330862 2.21493034877015 2.19164074686992 2.44321486877611 2.02677365381328 2.05502845291650 2.14022132915622 2.09497806997098 2.68701572744704 2.81506843487086 2.55851992207213 2.27737073038872 2.33474989545817 2.23447975213030 2.58950529924906 2.53323319108550 2.52790428347355 2.15644448097936 2.27296769358872 0.180138007772167 0.192185218899056 0.182162179164033 0.188274121996528 0.181154371796993 0.18509576415288 0.179866674438065 0.181360988629123 0.185917090843637 0.187938869152845 0.180151398691002 0.190705175986219 0.183844106976908 0.186698781890172 0.188497693880217 0.182979779715002 0.188921249831426 0.193795979882474 0.182821490877701 2 2 + 12663442 12663932 12663662.455 12662228 12664373 + gene protein_coding_gene FALSE TRUE AT2G29600.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G29800.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.0736802661609068 -0.85354285202665 0.411754311685767 1 -0.253871272712041 4.65437064110946 -0.0736802661609068 0.0490807975268717
AT1G47128_at 12.1462644258260 12.3103511111096 12.7018400509920 12.8289430215429 12.7710183173118 12.5310057476311 12.6808765575917 12.6995623678404 12.6827521610897 12.8121469506270 12.6368765387870 12.2756274115583 12.7255503363838 12.7962827635145 12.1404413185564 12.8619292098927 12.7258779016493 12.6837555041897 12.6206078308061 0.0568720062627792 0.0568244053559242 0.0572417285732391 0.0582410007996358 0.0571165992113319 0.0624319569795973 0.0570903770735405 0.0574029502933691 0.0587661736430985 0.0553875435180213 0.0557883101131479 0.0559043979205865 0.0553875435180213 0.0574930972008731 0.0564540050750394 0.0553875435180213 0.0639597669912733 0.0573437554876587 0.0565161425049509 1 1|0 -|/ 17285597 17286597 17285933.4 17285265 17288110 - gene protein_coding_gene FALSE TRUE AT1G47128.1 cysteine proteinase (RD21A) / thiol protease Identical to Cysteine proteinase RD21a precursor (EC 3.4.22.-) (RD21) (RD21A) [Arabidopsis Thaliana] (GB:P43297); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60579.1); similar to Granulin; Peptidase C1A, papain; Phospholipase A2 [Medicago truncatula] (GB:ABD32628.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60580.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Granulin; (InterPro:IPR000118) 0.074780905501516 0.85340535878707 0.411827271185045 1 -0.253982128728531 25.2392135019344 0.074780905501516 0.0550071061454741
AT3G42880_at 1.86558927438994 1.54890910564859 1.69736656271732 1.6721415716163 1.44505332341665 1.60670528988150 1.13230183980794 1.60192693893517 1.58613751736450 1.56003128182350 1.57888975964075 1.25227088668325 1.57384757932904 1.52369207855375 2.25640140639001 1.76241382742065 1.89373721305119 1.58592815955132 1.57173126525201 0.228619616454418 0.229492248634261 0.230347004692427 0.228242532244228 0.23090423508974 0.234920173349320 0.230681361797379 0.234358525354674 0.227324423095348 0.232496053426812 0.227286562194703 0.224836160580677 0.225677165049618 0.230979818113618 0.226294967518393 0.22573338657543 0.225862255683029 0.230282251247341 0.225840577924399 3 3 + 14966883 14967463 14967208.545 14965575 14967565 + gene protein_coding_gene FALSE TRUE AT3G42880.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G20690.1); similar to Sugar transporter superfamily [Medicago truncatula] (GB:ABE78229.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0869495781133456 0.85290255477925 0.412094154026094 1 -0.254387390579801 3.19676472262209 0.0869495781133456 0.102029149692351
AT1G77480_at 4.03565806739678 4.34778155470008 4.61936222887382 4.66252193958251 5.44168933475133 4.5536587409683 5.77789302076676 4.94195128155231 3.41311832976110 3.54538686216620 4.02328253467621 3.92161822080625 3.77598852561854 3.91866608027703 3.51445721414461 3.56221445168500 4.78070960081344 3.72290040872097 4.08605444295065 0.229647345941593 0.224886650607773 0.237616233754147 0.225814190555076 0.228657637036178 0.230102553784813 0.234427670118893 0.231145695197575 0.229487336458944 0.235130205081054 0.224886650607773 0.225861950924670 0.229723088660833 0.228767566525189 0.237740386649575 0.226140547459446 0.239919600416836 0.233589543135102 0.224886650607773 1 1 - 29119844 29120757 29120330.364 29119452 29122232 - gene protein_coding_gene FALSE TRUE AT1G77480.1|AT1G77480.2 nucellin protein, putative similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G44130.1); similar to Eukaryotic aspartyl protease family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96612.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007)|similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G44130.1); similar to Peptidase aspartic, active site [Medicago truncatula] (GB:ABE92379.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.132223415620060 0.852893517523475 0.412098951974016 1 -0.254394672750667 8.58956427501669 0.132223415620060 0.217985740683779
AT4G25750_at 0.149235093372787 0.308806504580102 0.222545789425829 0.498545969763148 0.266943501885997 0.200179076708433 0.536545004585605 0.069779352434142 0.00250316471268836 0.307755821967058 0.221365216979963 0.336996004204829 -0.132625558420762 0.255022766461642 0.0120648030051639 -0.0861116546566513 -0.0949992498673543 -0.206168477734904 0.412308961890001 0.182010455382620 0.180137268844590 0.176659868490194 0.183331370853845 0.180667819641974 0.175480600588935 0.177703176242807 0.177765025506301 0.192210427236716 0.187912012133458 0.181446006542120 0.183759003860133 0.184994768739858 0.191593471179334 0.182396181858415 0.179329892816529 0.176330794266148 0.180996130741792 0.184046475250799 4 4 - 13110810 13111175 13111047.364 13110636 13112369 - gene protein_coding_gene FALSE TRUE AT4G25750.1 ABC transporter family protein Identical to White-brown complex homolog protein 4 (WBC4) [Arabidopsis Thaliana] (GB:Q9SW08); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G52860.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE83068.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0858504529536995 -0.852865039803636 0.412114071259933 1 -0.254417619503713 0.421097018646042 -0.0858504529536995 0.0984993941548083
AT1G65120_at 2.36512358882178 1.82965382950252 2.39372747412450 2.10413774143534 2.02907508816863 2.32742955891912 2.02341571709038 1.96346261506298 2.30049320162391 3.09336220766339 2.24921830933003 2.17325915722325 1.8506041608545 2.23370922182537 2.51611085109419 2.23240577692488 2.64827718808561 2.30257170229055 2.49050258262071 0.197100640993570 0.208322146437222 0.197100640993570 0.197100640993570 0.203981002557587 0.206291805349885 0.197100640993570 0.224536519507722 0.197100640993570 0.198580792180891 0.211105866206588 0.197100640993570 0.218961931155555 0.207481179522737 0.202557158260166 0.215138815743974 0.20371837757566 0.199472080756544 0.197100640993570 1 1 - 24195355 24195816 24195655.167 24195011 24199736 - gene protein_coding_gene FALSE TRUE AT1G65120.1|AT1G65120.2 ubiquitin carboxyl-terminal hydrolase-related similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65130.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65200.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65110.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865)|similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65130.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65200.1); similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT1G65110.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) -0.0920856283199855 -0.852589190186828 0.412260543772744 1 -0.254639859069082 4.58144763993543 -0.0920856283199855 0.117778904056686
AT2G26680_at 4.17554499991908 4.50985331662922 3.88196433666862 4.69576243020813 4.37153126481828 4.20153916823670 4.79238937628873 4.63097018319411 4.78607830459247 4.09058266254377 5.07754080551737 5.30567174109706 4.56490289633559 4.4425595191942 5.01152947119807 4.77401003858956 4.36966835234651 4.9579146575523 4.20314316625837 0.219520328493837 0.206800471377515 0.219855816872364 0.206887426637940 0.206502091569736 0.20764630845514 0.204681653991776 0.217350467794616 0.225990396012625 0.204391082226349 0.209413314850139 0.203915777967434 0.204155194172159 0.210555087395223 0.210928173477748 0.213766385846889 0.213739162810246 0.217845775687623 0.205020984729171 2 2 - 11351086 11351918 11351457.909 11350879 11352480 - gene protein_coding_gene FALSE TRUE AT2G26680.1 similar to Methyltransferase FkbM [Frankia sp. EAN1pec] (GB:ZP_00569541.1); similar to Os03g0566600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050505.1); contains InterPro domain Methyltransferase FkbM; (InterPro:IPR006342) 0.106774902536223 0.852360941571349 0.412381767441441 1 -0.254823701635841 8.99389908267554 0.106774902536223 0.157563668095305
AT1G06530_at 8.62540706032262 8.81337119341766 8.49885779443945 8.70702665991739 8.69532475995135 8.53432214342113 8.53722592800289 8.65999338602145 8.11323021836217 8.29637578159145 7.9975524322803 8.31808006224619 8.11363128001397 7.92451955577273 8.15647059354829 8.29749119332613 8.22739188673367 7.99218277324501 8.2792316338715 0.127250062371216 0.131617133151004 0.125888493314783 0.125582913710202 0.124580434443787 0.12627049615686 0.121187840768357 0.126254642243679 0.128303438515825 0.129324355121453 0.126124023933696 0.125719654375593 0.128167454745592 0.132781310494690 0.123415626028100 0.124974968319769 0.137838598318934 0.125447515779652 0.129368563175350 1 1 + 2002020 2002566 2002382.091 2001593 2002595 + gene protein_coding_gene FALSE TRUE AT1G06530.1 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58840.2); similar to Putative surface protein [Streptococcus pyogenes MGAS10750] (GB:YP_603188.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.0756570624857054 -0.852102554377984 0.412519026952572 1 -0.255031767887599 16.8129548740638 -0.0756570624857054 0.0598625281976061
AT1G34440_at 1.17047536543813 1.47975176652445 1.69847325815109 2.13141176596194 1.45081777728824 1.78746415257891 1.38326458634367 1.53695201662220 1.86361553451834 1.94144021217238 1.57656207082488 1.47040307331504 1.48838671619380 2.05913412213445 1.49665956843077 1.54199844311187 1.60525581510926 2.04368531616571 1.75830808722143 0.228172411542346 0.235135307104596 0.240428677983469 0.228048986664659 0.223135673490039 0.237891410263722 0.231441271562813 0.230820131939261 0.229085518723707 0.227707860397514 0.230223570487367 0.225687741166074 0.245632122784148 0.226288033254713 0.228711745153545 0.225430096065843 0.236415532011428 0.22964164443917 0.224841731642704 1 1|0 -|/ 12591326 12592340 12592135.125 12591326 12592715 - gene protein_coding_gene FALSE TRUE AT1G34440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05095.1); contains domain REVERSE TRANSCRIPTASES (PTHR19446); contains domain SUBFAMILY NOT NAMED (PTHR19446:SF21) 0.0901184170598062 0.851906166779069 0.412623371956214 1 -0.255189872464621 3.33718396209596 0.0901184170598062 0.112157347368761
AT3G02480_at 2.16109053382032 1.97682250266772 2.15752528264758 2.00530695314279 1.64549504544536 1.78320111969773 2.11587824460223 1.82442255340617 1.91429215593688 2.36483744006518 2.26821675993646 1.84295460396624 2.1695016091399 2.00407827713794 2.02201558189238 1.91645994406599 2.18896270474577 2.18545350171273 2.04654429193926 0.199694842859427 0.193502611424144 0.192925584565432 0.195774613000913 0.19469013412465 0.196688403501702 0.201185511723509 0.198680172779669 0.204808043854322 0.198649294708192 0.197757610304579 0.196566937414738 0.196444364597678 0.19800743439059 0.200035530734779 0.196924081695363 0.19406781967666 0.198006753549193 0.19527215451747 3 3|0 +|/ 512400 512839 512676.625 512320 513034 + gene protein_coding_gene FALSE TRUE AT3G02480.1 ABA-responsive protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38760.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96872.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -0.0777619741065885 -0.85155313996732 0.412810987718178 1 -0.255474002327037 4.05034944716463 -0.0777619741065885 0.0694452884269288
AT1G13460_at 6.26723525852821 6.34899916361368 6.15294053708523 6.22128916463327 7.21707716640565 6.18528130372928 7.15299166866009 6.61289992847329 6.09216438811216 5.06590044096955 5.97467158109298 6.01906518988981 6.24157965298405 6.13852972546147 5.57692580150596 6.42195258596301 5.11666094162608 5.71693441436296 5.33885507401065 0.215896708937809 0.204176162269934 0.213533938040296 0.201365639156269 0.214451985279564 0.211411816337295 0.212127535092759 0.206980417516545 0.219960128553119 0.213654576159944 0.206472771445515 0.202871547291455 0.203259442050179 0.205375069923606 0.207031390053435 0.206980949206756 0.226193572603887 0.204672296622902 0.203082702748563 1 1 + 4617382 4617932 4617564.545 4615810 4618326 + gene protein_coding_gene FALSE TRUE AT1G13460.1|AT1G13460.2 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative Identical to Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform (PP2A, B' subunit, theta isoform) (AtB' theta) (B'THETA) [Arabidopsis Thaliana] (GB:Q8LF36;GB:Q9FX52); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT3G21650.1); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) [Arabidopsis thaliana] (TAIR:AT4G15415.1); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os04g0485100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053130.1); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) 0.125216111862270 0.851538079036797 0.412818993119679 1 -0.255486121689513 12.2197209177119 0.125216111862270 0.202382132639135
AT3G44250_at 2.45194395148624 2.68970162981083 2.69172644951285 2.19225470366106 2.14370912684216 2.28701940370526 2.43303060846482 2.28137703754233 2.61957681605235 1.76782263015227 2.51320979585789 2.3082989494786 2.70778884065504 2.80387002707585 2.03561700306495 2.29614276963390 2.56517291298897 2.44406943226514 2.06329696066915 0.177081968748379 0.178709408942171 0.175781456583953 0.190519411865208 0.174644987548648 0.187834584122862 0.178959182861215 0.175468914854784 0.181460815779847 0.181009000420411 0.180566342971151 0.182390001420988 0.181021453317857 0.182667140132118 0.186456461200527 0.184835670824151 0.176999055702968 0.181008780177955 0.190704114154309 3 3 - 15959493 15960062 15959758.909 15959492 15961211 - gene protein_coding_gene FALSE TRUE AT3G44250.1 CYP71B38 (cytochrome P450, family 71, subfamily B, polypeptide 38); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B38 (EC 1.14.-.-) (CYP71B38) [Arabidopsis Thaliana] (GB:Q9LXM3); similar to CYP71B5 (CYTOCHROME P450 71B5), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G53280.1); similar to CYP71B22 (cytochrome P450, family 71, subfamily B, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26200.1); similar to CYP71B21 (cytochrome P450, family 71, subfamily B, polypeptide 21), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26190.1); similar to Cytochrome P450 71B8 (GB:P58048); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0868515974286151 0.851069363442084 0.413068184077029 1 -0.255863199161599 4.70109703987926 0.0868515974286151 0.102312835530001
AT1G08170_at 2.69035417700757 2.50051454333093 2.37079509544215 2.23437286571679 2.14768028732598 2.45052037307075 2.23692765482907 2.47506953379389 2.50616998524321 2.56514915169853 2.80206285393808 2.34056220223887 2.60703678922939 2.37181775097113 2.36177426596189 2.09852135130408 2.53347792341379 2.34688752976952 2.18141898111973 0.202140907026160 0.197207679060360 0.197375557648897 0.203830848217107 0.205931159772543 0.199547762319368 0.199655580955204 0.205707159271954 0.217591836482891 0.202339498825045 0.200759932108214 0.200930463807963 0.200292802040372 0.204979382593447 0.204668968168384 0.201868058938969 0.205113793142058 0.201502723172557 0.197207679060360 1 1 - 2562978 2563479 2563205.091 2562938 2563669 - gene protein_coding_gene FALSE TRUE AT1G08170.1 histone H2B family protein Identical to Histone H2B.2 (HTB8) [Arabidopsis Thaliana] (GB:Q9SGE3); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT5G59910.1); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT1G07790.1); similar to PREDICTED: similar to nadrin [Danio rerio] (GB:XP_683155.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.0798430555926324 -0.851044766168736 0.413081263939798 1 -0.255882982483778 4.81345279433489 -0.0798430555926324 0.077984849427995
AT1G31812_at 12.4134645529857 12.5075315942878 12.6665346929437 12.6891197939719 12.7572247648312 12.6145182315013 12.9870728068636 13.0378290876326 12.7160298039495 12.9006034244770 13.0350623570458 12.9115820655884 13.0733668967243 13.0671210611370 12.6345158777048 13.0774885352717 13.1921217039814 12.9425957116930 12.7698669160223 0.0663720115337767 0.0673375927469898 0.0651375819227872 0.0685160652490374 0.0651845390349659 0.0665231350074928 0.0682320173355493 0.0703734315249389 0.0708829406947941 0.0647739033057609 0.0669182993233356 0.0646168090919542 0.0666435501843537 0.0690733757783574 0.0706239192015568 0.0664592962526303 0.0702828563923711 0.066376648690119 0.0646168090919542 1 1|0 -|/ 11411145 11411591 11411443 11410856 11412185 - gene protein_coding_gene FALSE TRUE AT1G31812.1 ACBP (ACYL-COA-BINDING PROTEIN); acyl-CoA binding Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. Identical to Acyl-CoA-binding protein (ACBP) [Arabidopsis Thaliana] (GB:P57752); similar to ACBP1 (ACYL-COA BINDING PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G53470.1); similar to Acyl-CoA-binding protein (ACBP) (GB:Q39315); contains InterPro domain Acyl-coA-binding protein, ACBP; (InterPro:IPR000582) 0.0708032941816534 0.851034925542138 0.413086496876582 1 -0.255890897055213 25.6027778527737 0.0708032941816534 0.031101755544548
ATCG00520_at 11.1620999719497 11.7647303282694 11.5033033396662 11.7705723976536 11.3634085456519 11.1256702983722 11.6154087764544 12.0419734406079 11.5983110494812 11.7153990205459 12.0412619261926 12.6148791378851 12.2222473243154 12.1178031028751 11.9014581793911 12.1193658564914 11.6460001720336 11.9434467927931 11.6941457219566 0.0849797640679772 0.0849797640679772 0.0883705621088198 0.08818750411679 0.0849797640679772 0.0925023492287456 0.0855741220690372 0.0868021236876233 0.0963026004127832 0.0849797640679772 0.0873205701461887 0.0865838619766415 0.0866308168099867 0.0911261683536838 0.090960907467075 0.0849797640679772 0.0985811594945734 0.0877425666941434 0.0860571675070743 C C + 59838 60287 60055.545 59772 60326 + gene protein_coding_gene FALSE TRUE ATCG00520.1 Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth. Identical to Photosystem I assembly protein ycf4 (ycf4) [Arabidopsis Thaliana] (GB:P56788); similar to photosystem I assembly protein ycf4 [Gossypium hirsutum] (GB:YP_538946.1); contains InterPro domain Photosystem I assembly Ycf4; (InterPro:IPR003359) 0.100604031759110 0.850987821426066 0.413111545990465 1 -0.255928780628121 23.4159424250740 0.100604031759110 0.141975820457840
AT3G25510_at 0.690696386547103 0.851425618160878 1.06943485506591 0.845017317126359 0.683719688676595 0.803828465943121 0.683338385971684 0.8978407642789 0.850070546366414 0.614216262744109 0.648385992877705 1.01859534388449 0.899544229815246 0.469588781553644 0.348316857218074 0.379295987811071 0.59927042718285 0.770706587375139 1.12850305586677 0.200654683925879 0.20245786545808 0.198439388127675 0.202218063242911 0.200216676544946 0.200664153888807 0.203279281329043 0.210571982339004 0.204885925571977 0.200138096352896 0.200437734772738 0.202638585644791 0.200993921690074 0.204838550643271 0.206401671566871 0.199973642639092 0.203089992724332 0.207481813098463 0.204694289275495 3 3|0 -|/ 9262137 9262702 9262314.8 9262075 9270034 - gene protein_coding_gene FALSE TRUE AT3G25510.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G65850.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT3G44670.2); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.0764377346988164 -0.850868409876298 0.413175051491184 1 -0.256024809455927 1.56865084236659 -0.0764377346988164 0.0639681076526536
AT4G18425_at 0.933464458814923 0.88099008124846 0.778211562508282 1.06160249563036 0.97420613300478 1.07056003256468 1.10547104683458 1.30605792880490 1.46696163212206 1.22653191275475 1.80839921556856 1.71262022845436 1.36041475395843 1.66656837290817 2.09141419511906 1.60351041785232 0.983045663973971 1.92016087634755 1.52290266553340 0.196819809008472 0.191148209017092 0.195254255861479 0.199421331247924 0.194576761124396 0.194445275133858 0.195516028809382 0.193666258968245 0.197300882828864 0.194625392521024 0.202213823160922 0.191148209017092 0.194929488135431 0.192472892591311 0.196575983072858 0.192820485330144 0.194171475944656 0.197458788979428 0.197778607158784 4 4 - 10181439 10181922 10181662.636 10181345 10182151 - gene protein_coding_gene FALSE TRUE AT4G18425.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46090.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10653.1); contains InterPro domain Protein of unknown function DUF679; (InterPro:IPR007770) 0.0762252445270233 0.850857524484317 0.41318084089349 1 -0.256033562731109 2.53818652692281 0.0762252445270233 0.0630126114452441
AT4G13150_at 1.72528409004140 1.64631968370793 1.77402225676000 1.87589685795728 2.61418166894931 1.73054137382726 2.02376807224661 2.44143309532822 2.25560949249774 2.28452707427834 1.90606415632827 1.86639487320239 1.85350211049972 1.96415236678157 2.13268605061405 1.84077406183735 1.83142638180652 2.37240182190785 2.16177145541391 0.196004338680687 0.196978466652895 0.198551727835993 0.195764661849901 0.209138441831289 0.205813753154151 0.231109071641345 0.202879233640742 0.20151562104778 0.202386115122529 0.198323334326131 0.2040690515148 0.199641426549097 0.196779226883389 0.200127290131837 0.19777717873012 0.204552996307784 0.208775984555740 0.201749851700356 4 4 - 7651532 7651797 7651646.727 7651532 7652585 - gene protein_coding_gene FALSE TRUE AT4G13150.1 unknown protein -0.11179240440768 -0.850787708743214 0.413217973742754 1 -0.256089701389917 4.08137817165336 -0.11179240440768 0.170603994638179
AT2G16880_at 3.54876348628022 3.59979749222037 3.51453207714688 3.37266913025287 3.73253250597184 3.65972711540412 3.54354023865906 3.59408639907587 3.17141217723103 3.48177041617052 3.59020910389598 3.90513820868381 3.6044965206448 3.65618093946266 3.49242272796381 3.8488910487146 3.60863895181584 3.23980310455983 3.77238468919958 0.191492050986585 0.195805320389657 0.198451796768335 0.198033370675613 0.193302503665608 0.198262939925480 0.195870541452942 0.194149539498859 0.208546106654430 0.194462124030224 0.195832140842708 0.200192797660129 0.191726956352409 0.206329304146438 0.199243416090505 0.190193768549327 0.210914300826232 0.198725174221399 0.193508236314364 2 2 - 7319349 7319910 7319693.182 7319228 7321615 - gene protein_coding_gene FALSE TRUE AT2G16880.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to hypothetical protein MtrDRAFT_AC152818g12v1 [Medicago truncatula] (GB:ABE77876.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0706758923261694 0.850664547907608 0.413283484715554 1 -0.256188724980371 7.11741189058542 0.0706758923261694 0.0302648338268661
AT4G00190_at 2.06393572331599 1.96024688065204 2.58296126304801 2.38642951953981 1.731600952491 1.86619752656200 1.87651370185088 2.03705889639909 2.37950931244829 2.53497060239682 2.0870245248265 2.18697393883981 1.90038802618214 2.18315725358189 2.43015270330938 2.22266281237888 2.14887789230607 2.380062058422 2.57945540303204 0.174085521907604 0.156498465862778 0.159427990400022 0.160362004476168 0.159592996477477 0.158961846560833 0.159754307091514 0.158273230299747 0.162611303339846 0.164983935244256 0.160963881853050 0.159537740787487 0.163137738446306 0.159874625359261 0.161888289465206 0.159210795030175 0.163283320503896 0.156866807088927 0.161132417297792 4 4 - 80452 80940 80709.091 80433 82040 - gene protein_coding_gene FALSE TRUE AT4G00190.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G45220.1); similar to Pectinesterase-2 precursor (Pectin methylesterase) (PE) (GB:O04887); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.0741037616029206 -0.850426669046789 0.413410035706134 1 -0.256379948850774 4.40831347824396 -0.0741037616029206 0.0528503105465947
AT2G04890_at 6.29328636514704 6.33975673439299 6.24403151791194 6.18647582555007 6.58251663681918 6.74977381641701 5.63921293126042 6.05422279980646 5.53594110373308 5.71042430595024 5.61726583154971 5.40543829831434 5.34224207435782 5.54015907119643 5.00865362843907 5.41531018233328 6.07119483984384 5.19665994132279 5.70048789516265 0.214903077548206 0.213485827851823 0.213401576794741 0.217063971674410 0.208327187475396 0.208327187475396 0.218185983272519 0.214746180216769 0.224153105881983 0.21503654156112 0.21634664354818 0.213177808850483 0.208994786323763 0.215248225584444 0.227004296164283 0.216600594172896 0.219926938790696 0.222313288711523 0.226469908003424 2 2 - 1720577 1721137 1720837.909 1720358 1722601 - gene protein_coding_gene FALSE TRUE AT2G04890.1 SCL21 (SCARECROW-LIKE 21); transcription factor Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS7 [Solanum lycopersicum] (GB:ABD72963.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.0798720616635822 0.849969530450723 0.413653305949638 1 -0.256747299224480 11.8104428709306 0.0798720616635822 0.0784837354215334
ATCG00180_at 10.7999230564374 11.5435671525960 11.0569790731075 10.9999463075617 11.0175696077299 10.3056067762719 11.6253155652899 11.4556368547880 11.5725939543987 11.9889380355887 11.9820755278015 12.4462576485187 11.9626021287663 12.0012088543478 12.0190239228090 12.0827640974854 12.1333932960229 11.2587398081764 11.5577542551545 0.092848767084298 0.089632103195425 0.0949149283644975 0.094315814832611 0.0922946814040429 0.0954542781611686 0.0902307208916821 0.089632103195425 0.102433939603704 0.089632103195425 0.093006616323701 0.089632103195425 0.089632103195425 0.0943892009364185 0.0900543323831392 0.0917673319919187 0.0917577696298637 0.0956107948328556 0.0925732850655185 C C - 20423 20784 20608.455 20251 23084 - gene protein_coding_gene FALSE TRUE ATCG00180.1 RNA polymerase beta' subunit-1 Identical to DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) (rpoC1) [Arabidopsis Thaliana] (GB:P56763); similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G35800.1); similar to RNA polymerase beta [Vitis vinifera] (GB:YP_567067.1); similar to RNA polymerase beta I subunit [Cucumis sativus] (GB:AAZ94642.1); similar to DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) (GB:P46819); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) -0.115877901999847 -0.849945702222979 0.413665989000888 1 -0.25676644257532 22.9466615036586 -0.115877901999847 0.180835186149799
AT3G53900_at 5.1208652158865 5.20399058250146 3.94540353675054 3.68733753971219 4.39645692837467 4.57361653825302 5.43965535356652 5.25427558941811 5.33951569878575 5.07743624479635 6.26916766310144 7.10450477300982 5.44092379342314 6.20378163665784 7.48073300215885 5.90128366891781 4.92891970155457 5.9694166733844 5.21687222425572 0.219639938225129 0.211220556465634 0.228475834693824 0.225637243647363 0.222226270905824 0.227819915765845 0.221734115556929 0.222661482017906 0.217789838530428 0.217275059721073 0.213345802007739 0.212911470863070 0.230965331844164 0.220379435238665 0.217455862127617 0.216369545821593 0.223853501559874 0.213253670010879 0.218922181819375 3 3|0 -|/ 19967919 19969468 19968664.833 19967634 19970019 - gene protein_coding_gene FALSE TRUE AT3G53900.1|AT3G53900.2 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) (GB:P93394); contains InterPro domain Uracil phosphoribosyl transferase; (InterPro:IPR005765); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836) -0.0764632040785845 -0.849632313833096 0.413832820721884 1 -0.257018172304779 10.3895082038772 -0.0764632040785845 0.064579555707349
AT1G69610_at 4.92077574408839 5.4099888810168 5.53515014540045 5.38498909718733 4.92378752495193 4.73423521095639 4.90364792474847 5.17341151876873 3.66549933019722 4.26423796034646 3.68056764634175 3.56472286841401 3.77014614131468 3.62918362919706 2.78820436008831 3.79262288343830 4.39321402590151 4.14455566181398 3.88519316052953 0.224174136353597 0.220989962511702 0.224072366440406 0.224903812109904 0.220989962511702 0.228992604220961 0.225881427822327 0.228633976424061 0.231760787777052 0.225476534003582 0.236321682768438 0.225198813074319 0.233203654192902 0.228375955446508 0.232407034098877 0.222237422017395 0.227380522659724 0.229609930998975 0.223563869052071 1 1|0 +|/ 26192264 26192985 26192601.1 26190617 26193152 + gene protein_coding_gene FALSE TRUE AT1G69610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39785.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32213.1); contains InterPro domain Protein of unknown function DUF1666; (InterPro:IPR012870) -0.087661760412801 -0.849610415486727 0.413844479965965 1 -0.257035759181777 8.95260440710053 -0.087661760412801 0.105347559281114
AT2G42180_at 1.68697731130744 2.14618614047733 2.14933435291355 2.06066166653335 1.60116942119426 2.0137587289985 1.81173117293197 1.8258836896115 1.77588858682153 1.97010517284741 1.88286183927704 1.60627885067841 2.10118251425974 2.05644318958699 1.96444426663306 1.89164501352829 2.32911392760718 2.25739891925106 2.02262672518241 0.166549222459527 0.166583899935512 0.158524743958727 0.164897860325857 0.157371311088916 0.157371311088916 0.1577843543124 0.157371311088916 0.166332521246799 0.16147759271909 0.157371311088916 0.160671996894338 0.164361604168091 0.160833322521889 0.159389003529739 0.157371311088916 0.162284436117673 0.159677944866138 0.163446102954586 2 2 - 17588244 17588520 17588378.818 17587995 17589034 - gene protein_coding_gene FALSE TRUE AT2G42180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57950.1); similar to Os09g0279200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062757.1) 0.0884170169900629 0.84881216280354 0.414269641891555 1 -0.257676579393545 3.87898509052257 0.0884170169900629 0.107956962206402
AT3G08730_at 8.86804243508103 8.85551830675493 9.40871249633483 9.5556699620614 9.37865558844487 9.11646956572544 10.140681835468 10.2694913149517 9.35267631490283 9.6462312075537 9.48025593150704 9.5222515698353 9.83330238251328 9.68554620423977 8.99718635604209 9.94358131032203 9.6351309534328 9.51269733971792 9.67226202419379 0.110774587164665 0.108843276717537 0.120478201869599 0.110590075507896 0.112716044581569 0.116731469635206 0.107038095198172 0.110354206769679 0.124287532917348 0.106730970411506 0.110351606913722 0.107138066667836 0.106792350347855 0.108433667987295 0.114699062615638 0.107640375081128 0.118319813894348 0.106730970411506 0.108981955935337 3 3|0 -|/ 2651588 2652370 2652016 2651453 2654218 - gene protein_coding_gene FALSE TRUE AT3G08730.1 ATPK1 (P70 RIBOSOMAL S6 KINASE); kinase/ protein binding Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues. Identical to Serine/threonine-protein kinase AtPK1/AtPK6 (EC 2.7.11.1) (ATPK1) [Arabidopsis Thaliana] (GB:P42818); similar to ATPK19/ATPK2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 19, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT3G08720.2); similar to Os03g0334000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050027.1); similar to ribosomal protein S6 kinase [Zea mays] (GB:AAQ93804.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0746845397605442 -0.848631727071943 0.414365785692914 1 -0.257821357045898 19.0158054488535 -0.0746845397605442 0.0566306000020177
AT4G28700_at 3.85894306380807 3.6875132402642 3.67841404649121 3.74832514003328 3.66401453813811 3.67465830485191 3.96227803057608 3.97544134305871 4.56196948686559 4.60275420791704 4.73537402801907 4.04141292423162 4.14958912689343 4.41484364531188 4.44508096107584 4.24919482760185 4.77445141787258 4.42289698653061 3.93290006018134 0.173949627334759 0.168545820727788 0.183509482450109 0.172255270854578 0.171974079677648 0.182765972949321 0.175306607812292 0.175716658639154 0.186397245619714 0.174808168744380 0.171248966938488 0.173057189838813 0.172940757369984 0.181835758224520 0.168545820727788 0.174425478179686 0.176005869210808 0.173240421242742 0.188555988526558 4 4 + 14162682 14163096 14162903 14161687 14163201 + gene protein_coding_gene FALSE TRUE AT4G28700.1 ammonium transporter, putative Identical to Ammonium transporter 1 member 4 (AtAMT1;4) (AMT1.4) [Arabidopsis Thaliana] (GB:Q9SVT8;GB:Q4PSH7); similar to ammonium transporter, putative [Arabidopsis thaliana] (TAIR:AT3G24290.1); similar to ATAMT1,3 (ammonium transporter 1,3), ammonium transporter [Arabidopsis thaliana] (TAIR:AT3G24300.1); similar to AMT1,1 (AMMONIUM TRANSPORT 1), ammonium transporter [Arabidopsis thaliana] (TAIR:AT4G13510.1); similar to high affinity ammonium transporter [Lotus japonicus] (GB:CAE01484.1); similar to Rh-like protein/ammonium transporter [Medicago truncatula] (GB:ABE90695.1); similar to Rh-like protein/ammonium transporter [Medicago truncatula] (GB:ABE88638.1); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905) -0.0707300036720089 -0.848628607213494 0.414367448218269 1 -0.257823860117020 8.16618850074275 -0.0707300036720089 0.0321724900927889
AT1G47485_at 1.60772343699614 1.29381109200521 1.52883240317770 1.03512363242973 1.23677259137966 1.61602853218583 1.31558068980942 1.09412799491873 1.45551033310965 1.6495331206958 1.25100664957253 1.110449130911 1.42115988118266 1.35134557886007 1.92533015890304 1.2284043645107 1.87684341569013 1.40587806263541 1.88117793257118 0.194296556245043 0.201999746913601 0.200525291311212 0.200636819387126 0.194296556245043 0.210793440602437 0.196502482393465 0.194296556245043 0.19472232258515 0.194296556245043 0.201173214554060 0.205087920073840 0.201655054600694 0.201709835079267 0.203271497532167 0.207414607670667 0.197411379226026 0.199998681712290 0.202667869502622 1 1 + 17425014 17425255 17425151.364 17424888 17425506 + gene protein_coding_gene FALSE TRUE AT1G47485.1 unknown protein -0.0946965769074142 -0.848425293110727 0.414475800945803 1 -0.257986962399923 2.89518802198384 -0.0946965769074142 0.126598171584784
AT4G30790_at 6.8907753672189 7.16699544640204 6.95713085095178 6.91527538791992 7.60284861749705 7.7695248925368 6.61380904084579 6.28512575225472 7.57357654934571 7.78357139524415 7.7189339882458 7.58762186529352 7.27622609842632 6.94082358484726 6.9174777709908 7.82218974021063 7.52470467764117 6.82694840952373 7.85883343454675 0.201361129565505 0.199876967878613 0.203737305277970 0.194886690335806 0.198504155453817 0.200544037897907 0.195697654485252 0.200530651687251 0.204839435593149 0.196652148264221 0.197827933174538 0.193639028220095 0.193639028220095 0.193639028220095 0.194877544250382 0.200327061351685 0.203489826048452 0.206014175094710 0.196153487950418 4 4 - 14993407 14994096 14993687.182 14993092 14997791 - gene protein_coding_gene FALSE TRUE AT4G30790.1 similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to Ubiquitin [Medicago truncatula] (GB:ABE79505.1); similar to Os02g0179800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046086.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.0801119213656116 0.848206450734184 0.414592450590296 1 -0.258162483910904 14.5579487827582 0.0801119213656116 0.0800297082384631
AT1G74320_at 6.70651767803048 6.9695197269576 6.18885608647547 6.56067283059944 7.21076201492251 7.08264697366955 6.87916251171618 5.96155058122699 6.19428495350041 6.32870628920516 5.8953777361753 6.29987907288551 6.41471891174208 5.66418177242272 5.89775453069147 6.31458968585304 5.89840937682779 5.75554280986709 6.61271680964777 0.201040722810360 0.197960504329461 0.202623409903262 0.198279377146944 0.202069428456735 0.210340405598272 0.194648651369637 0.210629148411472 0.218815259229145 0.199502977643533 0.194648651369637 0.199380802773461 0.200047722565298 0.196804224523606 0.202593884074104 0.197680844235844 0.208398287025465 0.198567413949165 0.194648651369637 1 1|0 +|/ 27945464 27946538 27945995.5 27944334 27946865 + gene protein_coding_gene FALSE TRUE AT1G74320.1 choline kinase, putative encodes a choline kinase, whose expression is induced by high salt and mannitol. similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71697.1); similar to GmCK3p (GB:AAC49376.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Choline/ethanolamine kinase; (InterPro:IPR002573) -0.114732880896191 -0.848127764018546 0.41463439842457 1 -0.258225584636474 12.8930240943711 -0.114732880896191 0.178661058939161
AT1G67280_at 10.4986392057344 10.3218635867179 10.6779083251456 10.5388937840802 10.9238314094201 10.4971892151427 10.8297024469167 10.6059736850227 10.4687339369130 10.8383019357019 10.6874855677302 10.5699222911552 10.7718865192493 10.6578780728154 10.6543710061426 10.9629157039388 10.6120600905658 10.7896077736031 10.6184251485735 0.089097827388552 0.09188137870901 0.0932548595755545 0.0903116800723615 0.0912332228399341 0.0967008654420909 0.0923057880520462 0.090798973712119 0.100500220934374 0.0941943399131674 0.0894976861341624 0.0900350608063804 0.091180401798133 0.0929001450712042 0.0937707190270104 0.0914982771583646 0.095698993610197 0.097017757408202 0.0935099122411825 1 1 - 25192360 25193351 25192826.636 25191942 25194357 - gene protein_coding_gene FALSE TRUE AT1G67280.1|AT1G67280.2 lactoylglutathione lyase, putative / glyoxalase I, putative similar to ATGLX1 (GLYOXALASE I HOMOLOG), lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G11840.4); similar to putative glyoxalase I [Oryza sativa (japonica cultivar-group)] (GB:BAD28547.1); similar to Os05g0230900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054977.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360)|similar to ATGLX1 (GLYOXALASE I HOMOLOG), lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G11840.4); similar to putative glyoxalase I [Oryza sativa (japonica cultivar-group)] (GB:BAD28547.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.0834282450515893 0.848054120381648 0.414673660394537 1 -0.258284636603692 21.2892933165456 0.0834282450515893 0.092004684604471
AT3G12400_at 7.63856470581378 7.69545001725977 7.7625904655253 7.7362602395806 7.80159997098577 7.95258584175126 7.11822180630247 7.65828337358169 7.96381943572583 7.65661528527745 7.8475890266211 7.5969187999549 7.64911277334352 8.07264682367313 7.21330344919148 7.79237591537242 7.58358566649132 7.53612478174164 7.71032413363407 0.133141465468347 0.130751765341474 0.13406606091659 0.133396224493645 0.130357991131053 0.130357991131053 0.141398790605080 0.140747602202026 0.135351399288768 0.136857328965908 0.134852903440932 0.132394546781515 0.134280552780376 0.139128198912721 0.143074477326817 0.131568745855058 0.151555189477685 0.130636140104154 0.133298898519372 3 3 - 3944612 3945167 3944787.455 3944303 3945858 - gene protein_coding_gene FALSE TRUE AT3G12400.1 ATELC/ELC; ubiquitin binding Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome. similar to ATELC-LIKE/ELC-LIKE [Arabidopsis thaliana] (TAIR:AT5G13860.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89049.1); contains InterPro domain Tumour susceptibility gene 101; (InterPro:IPR008883) 0.0850833450287745 0.847815651768595 0.414800813493511 1 -0.258475824817812 15.3896329389806 0.0850833450287745 0.0976483002019436
AT3G55110_at 2.42203081117554 2.69055859196583 2.15924601222574 2.71057525960817 2.31344437560036 2.09143927939840 3.06050567558589 2.61531677173847 1.8494932322351 2.93079530506687 2.44247001778284 2.47736437149550 2.17572568139657 2.33726248791622 2.70741870923842 2.78463140837221 2.62668356956701 2.29679053603989 2.11699170914567 0.209344733482879 0.212381627103600 0.208241961014386 0.209729840378248 0.216671523491438 0.211244366115368 0.214727108503893 0.214077082504915 0.206733487398724 0.212844422099413 0.20820015352574 0.210766783483486 0.224347535287282 0.209913897097177 0.211475527607361 0.208029323532332 0.214350213522799 0.214356364363559 0.217634300041553 3 3 - 20435761 20436314 20436071.182 20435527 20438354 - gene protein_coding_gene FALSE TRUE AT3G55110.1 ABC transporter family protein Identical to Probable white-brown complex homolog protein 18 (WBC18) [Arabidopsis Thaliana] (GB:Q9M2V5); similar to ATWBC19 (WHITE-BROWN COMPLEX HOMOLOG 19), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G55130.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55100.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55090.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90508.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97036.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0982383993323646 -0.847675629858494 0.414875486406373 1 -0.258588063326614 4.89795797876661 -0.0982383993323646 0.136652988761923
AT1G63400_at 1.67231131223345 1.73848114016495 1.55639450051848 1.83192697176200 1.53389399185548 1.70361939427013 1.73329109720857 1.58121624265402 1.81937968634362 2.20320592637314 1.60182348706715 1.53544624441712 1.84160777307541 2.24792571377039 2.15618848783638 1.84869787282702 1.83401578988449 1.86930135169369 1.95894061101639 0.148842372864966 0.148576489689757 0.148969944437612 0.156414363084627 0.148576489689757 0.157667447731649 0.159241287374691 0.155280579745079 0.156552511358967 0.16432249727207 0.156590806035045 0.150009990919836 0.154113352633182 0.150001449598588 0.153030670568506 0.148576489689757 0.150947856234155 0.160694533745802 0.159420562056091 1 1 + 23512191 23512662 23512478.091 23510985 23512718 + gene protein_coding_gene FALSE TRUE AT1G63400.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62590.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to fertility restorer [Raphanus sativus] (GB:CAD61285.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0759162339849909 -0.8476135149873 0.414908614831823 1 -0.258637848108414 3.59925078865797 -0.0759162339849909 0.0629286492076558
AT1G35420_at 9.76721624871494 9.65655176584001 9.71320351966798 9.42313596120192 9.99773295779469 9.84158760750907 10.0849419573129 10.0034463618889 10.1764646227746 10.3994785747905 10.4720351742892 10.2125712095033 10.1743640615871 10.3402966146775 10.3236646943526 10.2667074146198 10.1664888296835 10.2901768234220 10.3177976367533 0.0964278998390843 0.094168411594664 0.100103057614437 0.101070957262892 0.0982506669186144 0.102304028243291 0.0962195553331937 0.0926225760246974 0.101870142947276 0.0955070862591048 0.0983127955869569 0.0923026749317106 0.0970979082071965 0.0916113427350114 0.093760975978465 0.0919810664018765 0.0981929030724061 0.09817834433007 0.095839801011549 1 1|0 +|/ 13026783 13027358 13027072.7 13026267 13027645 + gene protein_coding_gene FALSE TRUE AT1G35420.1 dienelactone hydrolase family protein similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23600.1); similar to Dienelactone hydrolase [Medicago truncatula] (GB:ABE94325.1); contains InterPro domain Dienelactone hydrolase; (InterPro:IPR002925) -0.0756247902841625 -0.847166926325648 0.41514685160146 1 -0.258995693768661 20.1003279045945 -0.0756247902841625 0.061770751098282
AT1G55530_at 8.18770475227296 8.6445954318551 8.32484439878446 8.33247771301342 8.39460357509254 8.22221156723908 8.27072734434316 8.61124534110742 8.33384762189478 8.60275550326632 8.49099553701417 8.49461465949827 8.51265681175236 8.48913171227522 8.07965043435603 8.50210925996196 8.27134103980608 8.35574930914276 8.451842750674 0.157108175368647 0.149408430614213 0.153635298717773 0.155273119611609 0.145647906857442 0.163557501128285 0.146873793951456 0.144741694995099 0.160232071338562 0.146404617581175 0.146440032317143 0.146398898458955 0.151276971909298 0.151065926452762 0.154070310122036 0.144977908879151 0.161555242214886 0.152237759822475 0.157958315893686 1 1 - 20733143 20733713 20733427.455 20732848 20734949 - gene protein_coding_gene FALSE TRUE AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G56340.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0866590501657307 -0.846973248952433 0.415250199260483 1 -0.25915083410177 16.8047244591740 -0.0866590501657307 0.103033507611921
AT3G25180_at 1.89504895470006 2.43961531046448 2.23531635401697 2.39840281069745 1.87627973551918 2.20985221086660 2.42927875706877 2.04250804952109 2.01419149602001 2.18565755726280 2.40538816111730 2.12052459394734 2.59593032729030 2.01820645028961 2.43310604809496 1.74898074390983 2.56449218282485 2.55920478943205 2.07310351714258 0.211624182269808 0.201705932699346 0.211288769906274 0.208280206392913 0.20132996036946 0.205340920273466 0.200929284217302 0.203983930990288 0.202231690847752 0.204684649079271 0.201926690649395 0.205329310815393 0.205210151187865 0.20421238260696 0.204792872328263 0.203514713789472 0.20374045500751 0.200461236958017 0.204113344764149 3 3|0 -|/ 9167457 9168116 9167702.9 9167291 9169289 - gene protein_coding_gene FALSE TRUE AT3G25180.1|AT3G25180.2 CYP82G1 (cytochrome P450, family 82, subfamily G, polypeptide 1); oxygen binding member of CYP82G similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C1p [Glycine max] (GB:AAB94590.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.096547490903965 0.846922357267334 0.415277358316269 1 -0.259191594490522 4.38914444898436 0.096547490903965 0.1322495340469
AT1G42190_at 2.27121502433207 2.15807787872175 2.46728323326638 2.74737428993808 2.22541145366413 2.60197362186745 2.33400734496952 2.43114415806339 2.83347447941167 3.03288182097782 2.43195121996613 2.36758161548976 2.28238435844687 2.58129717051875 2.69391901419183 2.34737487684802 2.90536749201181 2.62493587234449 2.84564232359930 0.192623728817862 0.192623728817862 0.198457454453123 0.194217825958915 0.213100691973746 0.201356757333152 0.199569945256169 0.194727968351107 0.205474629533274 0.194329749681009 0.195099549417172 0.196614687718166 0.193711279726757 0.202316336132581 0.193731266708529 0.193768476940263 0.203508433757047 0.197275925323592 0.192623728817862 1 1 + 15763525 15763687 15763604.273 15763523 15763717 + gene protein_coding_gene FALSE TRUE AT1G42190.1 contains domain GAG/POL/ENV POLYPROTEIN (PTHR10178); contains domain POLYPROTEIN-RELATED (PTHR10178:SF12) -0.0813742703450314 -0.8467464629502 0.41537123600029 1 -0.259332456178868 5.12123637250625 -0.0813742703450314 0.0852170156792394
AT4G36530_at 10.2867811849739 10.4359414897851 10.5231618101781 10.4420834791556 10.5722143192844 10.5216173239329 11.0958501493148 10.9751754439023 10.2361062761284 10.5777636765448 10.5765868052934 10.6293679507090 10.6757834709304 10.7448496313555 10.6168565346778 11.0219492253369 10.9448715540873 10.7128602447438 10.4291035315645 0.0886854180388958 0.0876205944178341 0.0891569504478214 0.0882421101824906 0.0901139853525285 0.0909499613857245 0.0923710346981772 0.0932967279711863 0.095454599730701 0.0876205944178341 0.090227351333537 0.0878969195425617 0.0890801504059483 0.0921054801266699 0.089004586260775 0.0876205944178341 0.0952457935687227 0.0909394216657483 0.0882233904509586 4 4 - 17240137 17240855 17240461.455 17239961 17241940 - gene protein_coding_gene FALSE TRUE AT4G36530.1|AT4G36530.2 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G19850.1); similar to hydrolase, alpha/beta fold family [Synechococcus sp. JA-3-3Ab] (GB:YP_473970.1); similar to Os02g0705100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047865.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.0711991742698002 0.846655320248996 0.415419885990064 1 -0.259405436137861 21.1839607360097 0.0711991742698002 0.0370938676533665
AT1G61070_at 1.30999986778420 1.53456213662255 1.46534148685052 1.13617355084381 1.37376726543122 1.78772976856628 1.11398775280449 1.42851822711089 1.28607804985379 1.41485355300554 1.755860037837 1.13024514201354 1.48512947832775 1.64985611566796 1.47046379128398 1.07299476772220 2.03018890452088 1.62512948339992 1.62384990103172 0.193678913301475 0.192012577959592 0.191343844060720 0.189795085230237 0.192413829973929 0.189227201099062 0.189227201099062 0.18987031720968 0.197294926008106 0.190677553994356 0.200334806287162 0.202394542745017 0.199412784663478 0.196203465260121 0.192225940010682 0.198484190321956 0.194020039113604 0.189910598730494 0.194715272406755 1 1 - 22495685 22495828 22495763.636 22495398 22496207 - gene protein_coding_gene FALSE TRUE AT1G61070.1 LCR66/PDF2.4 (Low-molecular-weight cysteine-rich 66) Identical to Putative low-molecular-weight cysteine-rich protein LCR66 precursor (LCR66) [Arabidopsis Thaliana] (GB:Q9C947); similar to LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02130.1); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-rich 69), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02100.1); similar to protease inhibitor II (GB:AAA91049.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Gamma Purothionin; (InterPro:IPR008177); contains InterPro domain Knottin; (InterPro:IPR003614) 0.089937826154363 0.846445081902729 0.41553212131002 1 -0.259573752617633 2.87829865686525 0.089937826154363 0.113357292964743
AT3G12060_at 1.36756308734243 1.41185792745114 1.77497501345940 1.48442809016247 1.16695412503175 1.70672628540056 1.26552782818271 1.22360136019696 2.08076541954476 1.81489535221152 1.52538632099470 1.20935703955711 1.69082908765085 1.43000110965042 1.58172907353669 1.17993116674218 1.48342179402585 1.93678771888549 1.79314921601541 0.225333283972191 0.216920121616866 0.221508864375340 0.215314586272560 0.217318860027790 0.215990359231268 0.217787694162726 0.220151937978291 0.215536187186488 0.227087321864869 0.223618725210762 0.222127164449318 0.218488349420662 0.217575425879461 0.220098630382312 0.215539035773874 0.224738022820952 0.230857722780165 0.228836154185275 3 3|0 +|/ 3844400 3845072 3844838.1 3843148 3845156 + gene protein_coding_gene FALSE TRUE AT3G12060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06700.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16880.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.0877281271616248 -0.846362911844217 0.415575993193023 1 -0.259639527983673 3.12567941955558 -0.0877281271616248 0.106606639871385
AT3G23750_at 5.66353740430256 6.2294845991786 5.14399972306388 5.0834434268737 4.94930690439899 6.15439120299883 5.74791119678837 6.2921458940838 6.66236607899676 6.15308379231202 7.76205927837464 7.33687795673454 6.81034436022609 6.76397475946788 7.25995540154783 6.32711514241872 5.86035561177863 6.55618224355649 6.60703558134897 0.171215726649208 0.162650421201267 0.175779824824231 0.163867453581743 0.173922360044744 0.169061672545684 0.165133576813924 0.172538312669332 0.174688334368552 0.171864662318634 0.17058475619637 0.170345566148954 0.162307092743052 0.174411246419342 0.171542843795580 0.162381623685571 0.181198345741827 0.163004662420664 0.170555605259891 3 0|3 /|+ 8560899 8561228 8561061.4 8558339 8561435 + gene protein_coding_gene FALSE TRUE AT3G23750.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G24650.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01820.1); similar to TMK1 (TRANSMEMBRANE KINASE 1) [Arabidopsis thaliana] (TAIR:AT1G66150.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90463.1); similar to receptor-like kinase RHG4 [Glycine max] (GB:AAM44275.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.145019091271981 -0.846038876169234 0.415749031390007 1 -0.259898857613585 12.3124124998689 -0.145019091271981 0.249125569419336
AT2G47540_at 0.577774847156666 0.651441748803806 0.641537416189022 0.647066694063086 0.401819205397595 0.822649504829867 0.579886813593604 0.786478617011189 0.79639033854044 1.00865747118859 0.931389320143745 0.852592899724352 0.864127725863932 0.820271318632561 0.816574559546698 0.695213723692658 0.58407317125662 0.884211418004803 1.03403233357263 0.246246022579353 0.253628046189013 0.247364684096649 0.257102906903078 0.247615843380727 0.255475201076146 0.249161907282314 0.253410269428576 0.252796827069783 0.24680237656538 0.248005974809497 0.250848159583048 0.248108142698884 0.252567183142032 0.245257365727751 0.245257365727751 0.254371032175985 0.247879434628552 0.245257365727751 2 2 + 19512979 19513541 19513233.636 19512930 19513668 + gene protein_coding_gene FALSE TRUE AT2G47540.1 pollen Ole e 1 allergen and extensin family protein similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT4G02270.1); similar to TonB box, N-terminal [Medicago truncatula] (GB:ABE84972.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.080465291090237 -0.846031386382402 0.415753031583657 1 -0.259904850761561 1.5147902633183 -0.080465291090237 0.082130018617655
AT2G16200_at 1.19499705161326 1.19052391401977 1.25984645677394 1.22357397196941 0.983616023182678 1.10409553965649 1.26841005518786 1.13481906846469 1.18420394422999 0.952541825752245 1.45071163456215 1.45340440987879 1.04736978270389 1.53176328707673 1.11435784006160 1.71868405920795 1.59552864601542 1.20891791785724 1.44783007412232 0.184829932070546 0.181862538475435 0.179053576201645 0.180370418484204 0.178957502066882 0.179779705688771 0.181991041522735 0.17913717254421 0.184375429793926 0.191044763805426 0.179960844816979 0.178424787026495 0.18421381401349 0.188655247759845 0.186189610947685 0.178855952847709 0.184371362050218 0.189446848951899 0.187074619708061 2 0|2 /|+ 7031991 7032161 7032079.2 7031806 7032186 + gene protein_coding_gene FALSE TRUE AT2G16200.1 similar to coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative [Arabidopsis thaliana] (TAIR:AT4G34450.1); similar to Os07g0201100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059131.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to Putative Nonclathrin coat protein gamma - like protein [Oryza sativa (japonica cultivar-group)] (GB:AAN60990.1); contains domain COATOMER GAMMA SUBUNIT (PTHR10261) 0.0704145290215934 0.84542300546893 0.416078046308340 1 -0.260391508942613 2.46246066604451 0.0704145290215934 0.031767466856278
AT1G59910_at 6.60849600381577 6.73255978706405 6.18913215702885 6.25821563619839 6.28603237494683 6.75725718595843 5.83395831552188 6.55982288332393 6.71543973841106 6.70234147453919 7.33637359442983 6.84865298768288 6.85198275154767 6.74438775670688 6.71497305021793 6.81568044878985 6.14134622007549 6.51126571049569 7.25766339821382 0.195421628506430 0.180102842201809 0.18993668720248 0.188788695349233 0.184236041182221 0.195100640444057 0.190261228984775 0.189868741264846 0.192672827130224 0.179567329743899 0.194883107185964 0.182020112188417 0.182209381320972 0.189733156589976 0.184513811887342 0.187287519252046 0.191866045654109 0.182429678190685 0.182411073568903 1 1 - 22057839 22058291 22057990.273 22057616 22060717 - gene protein_coding_gene FALSE TRUE AT1G59910.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to ATFH8 (FORMIN 8), actin binding / actin filament binding / profilin binding [Arabidopsis thaliana] (TAIR:AT1G70140.1); similar to Pyridoxal-dependent decarboxylase; Actin-binding FH2 [Medicago truncatula] (GB:ABE93173.1); similar to Os02g0739100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048066.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.103640982146514 -0.845290884405096 0.416148651855500 1 -0.260497155559149 13.2218831356729 -0.103640982146514 0.151765737799226
AT2G15020_at 6.67978056867923 6.60039626265509 8.57106180938296 8.59590059419877 8.28054054851405 8.22178906939287 9.7742540473697 9.73751336023968 8.32726838403484 9.22070454364471 8.20456124930011 7.70931722019948 9.33443672441736 8.97661761105558 7.75163812311621 9.76457510797535 9.83150500961723 8.68662090479338 9.04236801794613 0.144154271940647 0.144692534075365 0.131139981665516 0.130536583525603 0.133461874662885 0.132471649783814 0.143347653784976 0.136809260428641 0.137285273294223 0.132907905476915 0.135786556774813 0.134183725233169 0.130699431790280 0.137670815486000 0.134957845940873 0.134168585004041 0.13381479179699 0.131054936942363 0.130802049446498 2 2 - 6498974 6499363 6499215.091 6498516 6500434 - gene protein_coding_gene FALSE TRUE AT2G15020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64190.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46203.1) 0.0691494787851723 0.845102729967989 0.416249215605386 1 -0.260647582850785 17.1305825203963 0.0691494787851723 0.0187350737903725
AT1G07540_at 1.11856721159876 1.16160481941704 1.47601754292975 1.92895315257092 1.41739002142408 1.15711960296002 1.23308942437223 1.37109316024352 1.32201314934370 1.7147462615065 1.18331083585066 1.65460260195693 1.68150460188241 1.40023735334889 1.50826082496564 1.35647972391979 1.70067760425015 1.54813498435072 1.79520879905199 0.189359956317243 0.187926546858150 0.186404511960372 0.185456109867364 0.183030030163200 0.188696843568129 0.184613293404351 0.184722333898756 0.189353069928589 0.183922006282721 0.183959977403298 0.191080136070824 0.183030030163200 0.191880432305903 0.186322711301167 0.184689815756111 0.18624767348232 0.187789889926426 0.184839982261936 1 1 - 2318436 2319287 2318861 2318430 2321045 - gene protein_coding_gene FALSE TRUE AT1G07540.1 TRFL2 (TRF-LIKE 2); DNA binding Arabidopsis thaliana telomere-binding protein, putative (At1g07540) similar to TRFL1 (TRF-LIKE 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G46590.1); similar to telomere binding protein [Solanum lycopersicum] (GB:BAF36749.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0836382112057812 0.844854116000487 0.416382118562894 1 -0.260846302290496 2.91538293508106 0.0836382112057812 0.0937995587913653
AT1G28135_at 1.56242946073641 1.40567544602482 1.67539920397402 1.4528952743351 1.91431687768787 1.86597000625648 1.98465485963407 1.42795045749023 2.30346630336719 1.98508559120884 2.20157528679358 2.192982489367 2.26291053153233 2.1813813886902 2.2195218415463 1.86058715698660 2.11368251027831 2.49251975666003 2.15219388285416 0.185137843472856 0.188823921741436 0.184897326619573 0.184104938126711 0.184022690209697 0.184022690209697 0.188350655780481 0.188127043094142 0.184505407423377 0.195082307743215 0.185282155027581 0.189182783454284 0.190527540907565 0.188405843859901 0.191601840299317 0.184469342858223 0.196405999773313 0.191540987929208 0.189792438427662 1 1 + 9829370 9829449 9829393.556 9829248 9829571 + gene protein_coding_gene FALSE TRUE AT1G28135.1 unknown protein 0.0878488228401904 0.844570337501822 0.416533854583261 1 -0.261073067078808 3.82994163795497 0.0878488228401904 0.107563884342845
AT1G60460_at 1.40405244766211 1.59479331183942 1.53305065973892 1.75854660965835 1.19953917729708 1.51663620118193 1.43493028069216 1.32246242194404 1.74632566713405 1.79169431712949 1.46377619253183 1.49279084955632 1.56330546081583 1.87262919276405 1.64139354617438 1.21280462721907 1.38577513598266 1.68089730162776 1.74250392759417 0.219937251437421 0.217889459133483 0.22289670841708 0.225244216457598 0.226822229331348 0.219093042026656 0.22034224998475 0.231312293499243 0.23296057380586 0.223970372373875 0.223349009539567 0.219631099680552 0.216573368454023 0.226022240115618 0.217795415536523 0.218223440462477 0.225924570977956 0.23629610644768 0.221903763109717 1 1 + 22281547 22282203 22281889 22279149 22282671 + gene protein_coding_gene FALSE TRUE AT1G60460.1|AT1G60460.2|AT1G60460.3 similar to Os06g0708200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058532.1) -0.0790597762586371 -0.844092574546262 0.416789398051723 1 -0.26145469376247 3.12017447656170 -0.0790597762586371 0.077475558793995
AT4G32630_at 1.58619291897751 1.72402499112989 2.00918494523114 1.90091582629753 1.59131443071973 2.1367535752175 1.20512337603314 2.49784331455009 1.33835171588263 1.78144419003834 2.11295137182217 1.76849456875105 1.62788807649664 1.80285975482925 2.43925102691763 1.65749617273623 1.82131304149793 1.72391727890780 2.10084365485722 0.229615260018121 0.216100847682418 0.227440140952049 0.219187227526918 0.219343196409399 0.218915236593659 0.226921025708933 0.243811153042459 0.231256753574237 0.222481132629680 0.221254961410632 0.223460108611584 0.226987263555084 0.223465313985877 0.221118893325201 0.231902276080583 0.225860882802446 0.219708707229642 0.224748206361459 4 4|0 +|/ 15739983 15740994 15740383 15737974 15741639 + gene protein_coding_gene FALSE TRUE AT4G32630.1 similar to human Rev interacting-like protein-related / hRIP protein-related [Arabidopsis thaliana] (TAIR:AT4G13350.2); similar to Arf GTPase activating protein [Medicago truncatula] (GB:ABE91595.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.142652134381296 0.843856634104559 0.416915635663545 1 -0.261643088757693 3.63616147148002 0.142652134381296 0.244696392948281
AT1G65360_at 0.99766307962368 1.49129255997563 1.21961806856589 1.33390705178123 0.873910919810637 1.34388117077826 0.73820861354657 1.04023543315248 1.96663504997967 1.72234291663159 0.933210420305155 1.18213472398274 1.08449059329342 1.32771635646164 1.63498742528909 1.37063236992348 1.55856609744403 1.75114325473194 1.32840447637643 0.228763063967813 0.223639568165806 0.219710176780755 0.223715404983165 0.223575136886548 0.219645357453835 0.226705375189812 0.223292261711932 0.223106547794808 0.219143646257997 0.221516392826025 0.222403858565222 0.236811336926292 0.232269610231904 0.22685296157955 0.219143646257997 0.241555470535654 0.221953615210215 0.221606536826707 1 1 + 24285195 24285766 24285499.455 24285000 24285814 + gene protein_coding_gene FALSE TRUE AT1G65360.1 MADS-box protein (AGL23) similar to AGL28 (AGAMOUS-LIKE 28), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G01530.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE91589.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0955606389954416 -0.843710824773649 0.416993662390585 1 -0.261759492529725 2.64375009690838 -0.0955606389954416 0.130518588328294
AT3G02240_at 1.11496404043611 1.21485238621000 1.63979525553385 1.42177744118264 1.34654730613403 1.24913101480860 1.13343773596345 1.36899022605173 1.26419371172133 1.57595842250449 1.45792962878320 0.819213570591882 1.38419197349304 1.34691849325426 1.25382122647738 1.28683232893354 1.60894732064979 1.76841212882874 1.42567942632495 0.178745909843634 0.173011274369149 0.170712068556654 0.175855622423744 0.171873607717702 0.170712068556654 0.180256744233448 0.17284014069567 0.184114611310024 0.172229751746071 0.174388226660197 0.177313556585345 0.170712068556654 0.179793967774816 0.173093083337851 0.172249143329902 0.172897452795781 0.173729800417033 0.177224287338736 3 3|0 +|/ 418738 419035 418912.444 418466 419158 + gene protein_coding_gene FALSE TRUE AT3G02240.1 unknown protein 0.075045568804508 0.843552667888654 0.41707830776867 1 -0.261885733973297 2.70505051948675 0.075045568804508 0.0605652652787288
AT4G00460_at 0.915709635472826 1.31793479465653 0.899138675227583 1.36936109816599 1.11394913472709 1.28666246635302 0.91760877710052 1.1822048616216 1.59118269691879 1.30794510249957 1.37708585553772 1.50693282593758 1.61236544042492 1.97953114110986 1.49128876171518 1.35041361854943 1.57997952620435 1.44725919194076 1.43032177218219 0.196668774469217 0.199712239567344 0.206292907559658 0.199381546080419 0.196571901995216 0.195176772419072 0.202377920232289 0.196069975772639 0.200984697678115 0.195176772419072 0.209354275776285 0.198016392875247 0.204363066882046 0.198995810970855 0.198653048695665 0.195176772419072 0.205186346969856 0.200433886275753 0.197474870803836 4 4 - 211389 211828 211607.7 211081 213697 - gene protein_coding_gene FALSE TRUE AT4G00460.1 ATROPGEF3/ROPGEF3 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF2/ROPGEF2 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor/ / protein binding [Arabidopsis thaliana] (TAIR:AT1G01700.1); similar to Protein of unknown function DUF315 [Medicago truncatula] (GB:ABD32835.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) 0.0919352571914233 0.84345741851833 0.417129290703644 1 -0.261961752483746 2.61844963160447 0.0919352571914233 0.120236904482985
AT3G03410_at 1.47679937575170 1.24868221969431 1.62070821786092 1.27950436782426 1.03237852769367 1.39575137294162 1.1672447644108 1.29179007981768 1.58044452913669 1.25436198718409 1.77345185090339 1.36636140361512 1.0310951804303 1.41718787890369 1.52097619449679 1.27191100859814 1.47184891262192 1.28832337861326 0.944213303994194 0.198145586424513 0.193393525911089 0.188424436183869 0.195739339745993 0.200256690518664 0.188495672445687 0.188424436183869 0.196125260851671 0.191665553684150 0.198844918599568 0.189512914812240 0.192910679490256 0.193845898299652 0.192649700154434 0.188424436183869 0.190755208896268 0.193743597468683 0.189512694189547 0.192071397487629 3 3 - 811383 811702 811511.273 811331 811726 - gene protein_coding_gene FALSE TRUE AT3G03410.1 calmodulin-related protein, putative Identical to Calmodulin-like protein 2 [Arabidopsis Thaliana] (GB:Q9SRP5); similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT5G17470.1); similar to calmodulin mutant SYNCAM48 [synthetic construct] (GB:AAD34248.1); similar to calmodulin [Dictyostelium discoideum AX4] (GB:XP_641695.1); similar to calmodulin (GB:AAA33171.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0844638571230004 0.84274135765699 0.417512702018018 1 -0.262533002026559 2.64026624047995 0.0844638571230004 0.0972821008079404
AT1G68330_at 1.69033402378150 1.73041202384118 0.911452446504754 1.29712388428238 1.09956896888024 1.42875542793784 1.50701245512504 1.41986650329722 2.05787768463035 1.97483755948882 2.35336901473228 2.57312216464184 2.16324904343457 2.43528281028023 2.53365432412818 1.82243804523132 1.95667460645489 2.30244416876896 2.05444200682428 0.225793800418302 0.237197784497494 0.241360998964078 0.230430055863979 0.238415076496822 0.236494545564540 0.242167343850719 0.239539597085958 0.236471314738856 0.225807192506161 0.232295634058567 0.226802146768297 0.241040874779452 0.230927917387770 0.230670195807888 0.229776993230796 0.243003423180909 0.229881509776691 0.240354048254773 1 1 + 25615221 25615646 25615484.9 25614586 25615865 + gene protein_coding_gene FALSE TRUE AT1G68330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48780.1) -0.0821021071910258 -0.842442969963959 0.417672542286672 1 -0.262770921492499 3.53385656130136 -0.0821021071910258 0.0893047323739158
AT4G28610_at 7.46566708600883 7.45501097732348 7.58728554760141 7.73159059665927 8.20586075277306 7.95034204670516 8.41318433502674 8.20640701557762 8.21028841220458 7.91983500912797 7.97992892386668 8.19855033468968 7.20781529567436 8.0006530928143 7.9134947248055 8.36632335403836 7.90931507272852 8.03036780472808 8.1250758918659 0.132282149285532 0.134813541837020 0.135437665344297 0.133081210018322 0.132694851356627 0.128857558037888 0.133349822298019 0.128249712220609 0.137443338582311 0.134123323338832 0.131701419532034 0.138402824132629 0.146733226230726 0.138171935188543 0.133523662205694 0.133298207969746 0.134891142711381 0.136645495646081 0.138781266162241 4 4 - 14133176 14134163 14133605.8 14132862 14135265 - gene protein_coding_gene FALSE TRUE AT4G28610.1 PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G20400.1); similar to transfactor [Nicotiana tabacum] (GB:BAA75684.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0752789899320314 -0.842376952364046 0.417707912148362 1 -0.262823550752805 15.8948548012849 -0.0752789899320314 0.0621514854150155
AT3G63260_at 6.90231059783677 7.18108175412549 7.08027712628833 7.0563361063254 6.92967284133114 7.41549222720992 7.2547116854257 7.6354980226966 7.13973258255059 7.09219950724152 7.11332036789273 7.07671125817284 7.30612844940271 7.0555378435889 6.70490522516286 7.33406447929503 6.9928331343312 6.89571129377386 7.12341999600086 0.167434049302092 0.161159028825135 0.170173472041225 0.161814049787237 0.157295789999192 0.174845065367142 0.15933079457619 0.168237409328843 0.175658127061264 0.165590721805535 0.158686519462135 0.161367793011073 0.159657541457969 0.163048083533838 0.162467724142766 0.155442586275880 0.183662179946283 0.173176717452163 0.161272913547967 3 3|0 -|/ 23384072 23384886 23384372.75 23383856 23385982 - gene protein_coding_gene FALSE TRUE AT3G63260.1|AT3G63260.2 ATMRK1 (Arabidopsis thaliana MLK/Raf-related protein kinase 1); kinase/ protein threonine/tyrosine kinase|ATMRK1 (Arabidopsis thaliana MLK/Raf-related protein kinase 1); kinase protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G22750.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06454.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0907525642721247 -0.841795224291605 0.418019668341122 1 -0.263287149832005 14.2710986460133 -0.0907525642721247 0.117282714254750
AT1G77470_at 5.45360524733205 6.01114029564973 5.49284518494601 5.92805378210787 6.06118942099507 5.71999170433091 5.77708853573556 5.52474267346948 4.63774184288355 5.17231592920252 4.47762041875797 4.790236460184 5.33729663061631 4.87185592006752 4.65842997682474 5.29029711977133 5.5723354460879 5.11771327816115 4.96135198895058 0.223247148482536 0.227508532591099 0.226712970063804 0.213860704093906 0.220823523703715 0.217699048308117 0.227810047450003 0.217935529776505 0.218618287627198 0.214670915705242 0.220215699632222 0.219816264644382 0.218501232287994 0.217369578614530 0.226013053677672 0.216219405693181 0.228203608858106 0.218158479446162 0.222771339767678 1 1 - 29117095 29118191 29117725.545 29116842 29119329 - gene protein_coding_gene FALSE TRUE AT1G77470.1 replication factor C 36 kDA, putative similar to EMB1968 (EMBRYO DEFECTIVE 1968), ATPase [Arabidopsis thaliana] (TAIR:AT1G21690.1); similar to replication factor C 36kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB16439.1); similar to Os02g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048280.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0997728688391197 0.841549935874197 0.418151168747986 1 -0.263482545245719 10.7152203105647 0.0997728688391197 0.142740850424334
AT3G25780_at 2.41982756993415 2.79009460261484 2.63324201549999 2.93203796915574 1.7605606974682 1.81809725471661 1.64119078354858 1.51428224547757 1.58622799824282 2.23976998573021 1.44005200918221 1.72071525618291 1.87269767630967 2.0815538852998 1.74040946222924 1.50678781708433 1.89500172898709 1.89873814574373 1.58021344917518 0.229524122703884 0.229950156238211 0.231213039851602 0.234321270305704 0.219407943341574 0.218258241592979 0.217098373687271 0.220352140223806 0.228298685176047 0.219806144360135 0.225666147347011 0.216551079094425 0.226970608701504 0.216403381922072 0.221360386728341 0.216403381922072 0.217047351794961 0.230756669243399 0.218547786274863 3 3 + 9410787 9411574 9411306.273 9410527 9411804 + gene protein_coding_gene FALSE TRUE AT3G25780.1 AOC3 (ALLENE OXIDE CYCLASE 3) Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884. Identical to Allene oxide cyclase 3, chloroplast precursor (EC 5.3.99.6) (AOC3) [Arabidopsis Thaliana] (GB:Q9LS01); similar to AOC4 (ALLENE OXIDE CYCLASE 4) [Arabidopsis thaliana] (TAIR:AT1G13280.1); similar to allene oxide cyclase [Pisum sativum] (GB:BAE45342.1); contains InterPro domain Allene oxide cyclase; (InterPro:IPR009410) 0.0810298518638267 0.841505457394733 0.418175016874983 1 -0.263517971263208 3.97444912997368 0.0810298518638267 0.0857961897807755
AT1G60350_at 0.52471312701178 1.05883577605655 0.864570231658502 1.26304712656769 1.33260929869062 0.822229028559565 1.0594115979418 1.13287504835301 0.707354938616472 1.39257688522458 1.1431270620265 0.933449714166963 0.979089888226245 1.05829935799309 1.00486466735233 0.719203122324884 0.870572494788472 1.55931159047301 0.775021201673212 0.187886834686925 0.184629712240332 0.187847217728669 0.190189665806267 0.184179922606123 0.182217366494181 0.182166324673491 0.182974070760713 0.190204415028548 0.18580010072395 0.184537924001305 0.183967287053542 0.196555638115593 0.193337029389902 0.189438344299616 0.188423313976109 0.189133605402786 0.199909209788583 0.188467116505752 1 1 - 22245085 22245362 22245233.909 22244938 22245900 - gene protein_coding_gene FALSE TRUE AT1G60350.1 ANAC024 (Arabidopsis NAC domain containing protein 24); transcription factor similar to apical meristem formation protein-related [Arabidopsis thaliana] (TAIR:AT1G60300.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE83460.1); similar to Os10g0477600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064857.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.100913548012913 0.84146982923014 0.418194120368716 1 -0.263546347049164 2.00319011052512 0.100913548012913 0.145813906398338
AT3G11900_at 9.33277185577738 9.5720211693439 9.52164024137874 9.66602522752022 9.83511284640158 9.3615309147368 10.5155027029723 10.2228266805245 9.7346358153659 9.56804631070342 9.76296357213618 9.83404414645641 9.6596088011873 9.76958788832578 9.59865159362566 9.7593364488591 9.36888935200768 9.9421826774942 9.4145189869269 0.105239287767258 0.099374306197499 0.105996757562681 0.104132484885701 0.099374306197499 0.107279381429399 0.100476611875127 0.0994507472716586 0.116208917538221 0.099374306197499 0.100958591807290 0.0997369659795184 0.099374306197499 0.107673667494195 0.104441081593533 0.102144604671373 0.110232106138063 0.106825943209910 0.099374306197499 3 3 + 3759396 3760055 3759730.455 3758458 3760384 + gene protein_coding_gene FALSE TRUE AT3G11900.1 ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid permease/ amino acid transporter encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters. similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT4G38250.1); similar to amino acid transport protein (GB:AAB82307.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.087597802816197 -0.84143416842691 0.418213241950954 1 -0.263574747785148 19.3955831703371 -0.087597802816197 0.107798798904456
AT3G21700_at 2.3997938007706 2.89851742494019 2.74419520583328 2.55575554563412 2.52320910915382 1.85959973451959 2.01422287811985 2.40512734809667 2.21118097083403 2.20749493599456 2.22934535832635 3.11934841050405 2.27354793375747 2.70321481034077 2.17594515833488 2.51737024343268 2.65451004589596 2.16189780788413 2.35032330467187 0.212121459805215 0.217301048956311 0.208857696547067 0.215365626309350 0.215397119185663 0.216481235432081 0.214063927121363 0.210392939185668 0.221765433365241 0.210804424690264 0.208054239615992 0.211938424410125 0.209570823416233 0.211627899389034 0.211818105629357 0.210554066930267 0.223125937478942 0.208054239615992 0.211603248999142 3 3 + 7645134 7646149 7645692 7644357 7646390 + gene protein_coding_gene FALSE TRUE AT3G21700.1|AT3G21700.2|AT3G21700.3 GTP binding similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G54840.1); similar to Ras small GTPase, Rab type [Medicago truncatula] (GB:ABE83942.1); contains InterPro domain Miro-like; (InterPro:IPR013684); contains InterPro domain Ras GTPase; (InterPro:IPR001806)|similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G54840.1); similar to Ras small GTPase, Rab type [Medicago truncatula] (GB:ABE83942.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Miro-like; (InterPro:IPR013684); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.107169468181379 0.841335698416736 0.418266045341775 1 -0.263653165177210 4.79291790166336 0.107169468181379 0.162101372879188
AT4G19690_at 0.311394814714294 -0.0739880431543352 0.149147592994064 -0.014702476905375 0.373243196631717 0.233796487138507 0.463431020378341 0.0252981405314415 0.306708400666605 0.0978577508928649 0.205946083212538 -0.149178676552501 0.114948699785674 0.192830512810032 0.0175557978416149 0.121802832054665 -0.296131461731175 0.49309610451944 0.394810610574797 0.17468480759699 0.187969123537731 0.176306508711738 0.175970682498831 0.176614711453874 0.172494179532275 0.174755280589713 0.182647568502599 0.179382407884152 0.181114380693481 0.176655054038824 0.174266634198573 0.178803008185211 0.174523431745498 0.175075742271816 0.172278793950739 0.174737729786228 0.176365945194659 0.172278793950739 4 4 + 10707537 10708076 10707847.273 10707436 10709025 + gene protein_coding_gene FALSE TRUE AT4G19690.1|AT4G19690.2 IRT1 (IRON-REGULATED TRANSPORTER 1); cadmium ion transporter/ iron ion transporter/ manganese ion transporter/ zinc ion transporter Fe(II) transport protein (IRT1) Identical to Fe(II) transport protein 1 precursor (Iron-regulated transporter 1) (IRT1) [Arabidopsis Thaliana] (GB:Q38856;GB:Q8LBP0); similar to IRT2 (iron-responsive transporter 2), iron ion transporter/ zinc ion transporter [Arabidopsis thaliana] (TAIR:AT4G19680.2); similar to putative Fe(II) transporter 1 [Thlaspi caerulescens] (GB:CAL25151.1); similar to putative Fe(II) transporter [Thlaspi caerulescens] (GB:CAC86382.1); similar to putative Fe (II) transporter 1 [Thlaspi caerulescens] (GB:CAL25150.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689)|Identical to Fe(II) transport protein 1 precursor (Iron-regulated transporter 1) (IRT1) [Arabidopsis Thaliana] (GB:Q38856;GB:Q8LBP0); similar to IRT2 (iron-responsive transporter 2), iron ion transporter/ zinc ion transporter [Arabidopsis thaliana] (TAIR:AT4G19680.2); similar to putative Fe(II) transporter 1 [Thlaspi caerulescens] (GB:CAL25151.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) -0.087506483685797 -0.841092752381881 0.418396341493489 1 -0.263846603133327 0.360486420143061 -0.087506483685797 0.107624502442343
AT1G30690_at 5.59028843370232 5.63029869888992 5.34005004150443 4.74979716606651 7.03127827050007 6.56345960631832 7.79260935398512 7.6169219824788 8.13255603221814 6.7977355589806 9.42744216108407 8.68772650016414 8.19090197154853 8.70713430716655 8.7690158167543 7.24493803090074 6.34363584883315 7.61568403078922 7.80940339119006 0.285133321635132 0.273239956435485 0.270542904039256 0.288747100191291 0.265771325979399 0.278612866238246 0.263391458961902 0.263391458961902 0.270587079405609 0.263391458961902 0.269539620564653 0.263391458961902 0.266879179541490 0.269086044105172 0.270853993015407 0.265255098777320 0.291903372211436 0.275128972966716 0.265947998367592 1 1|0 +|/ 10889338 10890041 10889573.1 10887677 10890314 + gene protein_coding_gene FALSE TRUE AT1G30690.1|AT1G30690.2 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein|transporter Identical to Patellin-4 (PATL4) [Arabidopsis Thaliana] (GB:Q94C59;GB:Q9SA84); similar to PATL1 (PATELLIN 1), transporter [Arabidopsis thaliana] (TAIR:AT1G72150.1); similar to patellin 1 [Cucurbita pepo] (GB:ABB77236.1); similar to Os06g0671800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058333.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.096485920112274 -0.840806541005621 0.418549876619688 1 -0.264074427470491 14.1409420246147 -0.096485920112274 0.134016243802127
AT2G37290_at 1.22286683119075 1.33393786310842 0.809164706759175 1.34276929206521 1.18456062951067 1.24319458788389 1.07338321562037 1.51921299249298 1.35684153347100 1.37537816535367 1.26197499996195 0.9454247379343 1.68783000694987 1.29158293524832 1.32118089646894 1.04722514554807 1.24005460981774 1.25803693383876 1.16446177470496 0.219806753957928 0.227365388381624 0.213258518021873 0.221256332840544 0.218032652062545 0.217554329034237 0.213258518021873 0.2459845382119 0.227365610745653 0.213258518021873 0.213258518021873 0.213258518021873 0.220241124924270 0.223472379338171 0.220947697575095 0.220116113651381 0.233182534589031 0.222948529957694 0.236507825632341 2 0|2 /|- 15665441 15665786 15665605.429 15664014 15668414 - gene protein_coding_gene FALSE TRUE AT2G37290.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39280.1); similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55020.1); similar to RabGAP/TBC domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73388.1); similar to Os03g0283800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049757.1); similar to putative lyncein [Oryza sativa (japonica cultivar-group)] (GB:AAN64504.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) -0.0923289814186393 -0.840652824779546 0.418632351734240 1 -0.264196757830408 2.49391506869437 -0.0923289814186393 0.122279102747932
AT3G09470_at 5.47413592200747 6.0962273975134 5.2430790936216 5.66432505771808 6.11635253283907 5.39287784965969 5.32615312716347 5.63295008388782 4.73249472265301 5.43377124419094 5.4882803061503 5.49892456232026 5.50348224350093 5.51474978791663 5.71991512785106 5.77821980581933 5.33924357307155 5.07693247841688 5.51327103817649 0.179794679478531 0.174186655949498 0.176379355233796 0.175795836305344 0.176285192876479 0.177682590514439 0.176724939125497 0.178738118875898 0.182956220637838 0.174379123072507 0.178428972474869 0.174375112538984 0.177547328815395 0.176354042688839 0.182516097812513 0.17571371151392 0.178028565883116 0.18430066323999 0.174286736012177 3 3 - 2910635 2913976 2911921.864 2910379 2914519 - gene protein_coding_gene FALSE TRUE AT3G09470.1|AT3G09470.2 Identical to UNC93-like protein [Arabidopsis Thaliana] (GB:Q94AA1;GB:Q67XL1;GB:Q67Y57;GB:Q9SF56); similar to Protein of unknown function DUF895, eukaryotic [Medicago truncatula] (GB:ABE82090.1); contains InterPro domain Protein of unknown function DUF895, eukaryotic; (InterPro:IPR010291) 0.117624075720313 0.840628353213875 0.41864548274998 1 -0.264216230985201 10.9765030433702 0.117624075720313 0.188143607151834
AT2G18590_at 2.17435663593442 2.33196164115993 2.50375204677876 2.64729040215174 2.08527351722747 2.01256756355968 2.19739520844195 2.40957481403717 2.41545289138467 2.82906489177124 2.38443163528684 2.20430897356946 2.81953057085641 1.86845653736548 2.30169554506787 2.22507887386831 2.84214687868151 2.48781936595531 2.47246108273685 0.20729499974565 0.211417325318109 0.208273714449832 0.203220976223421 0.204038884731243 0.213410799294604 0.207309925394263 0.206180364836228 0.209368477603820 0.203220976223421 0.210167033880109 0.211222288483905 0.214884318338479 0.207599667845222 0.209945933808138 0.203220976223421 0.221885400688626 0.213789034069883 0.208570295423388 2 2 + 8079440 8079859 8079666.273 8077433 8079948 + gene protein_coding_gene FALSE TRUE AT2G18590.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT4G36790.1); similar to membrane transporter PFB0275w-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC82966.1); similar to Os07g0208900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059164.1); similar to Os03g0809100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051655.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.0733719667567369 -0.840517537922543 0.418704947771205 1 -0.264304405665625 4.77727639676755 -0.0733719667567369 0.0535488675145506
AT1G25270_at 0.72375443771132 0.905322346312235 1.01819374884565 0.742084133646002 0.327230234332905 0.987505119355092 0.905920980167111 0.793568192094638 1.02333667598070 0.606683492719629 0.325757732746135 0.80697143735903 0.363460798180823 0.72618378955296 0.787730865567408 0.881440977512704 1.11769476293926 0.844594660879554 0.943379226471657 0.231026690475559 0.23218995504575 0.235055282590144 0.231026690475559 0.231096676060868 0.234233974657233 0.232714803427531 0.239553336698904 0.237956114050373 0.239985884797848 0.237960258693433 0.231026690475559 0.231026690475559 0.231026690475559 0.233088882903153 0.233283062611248 0.232008759639770 0.246998675533476 0.231026690475559 1 1 + 8859030 8859850 8859376.727 8857713 8859896 + gene protein_coding_gene FALSE TRUE AT1G25270.1 similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G68170.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABD28596.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.0947293001624206 -0.84035940689798 0.418789812905013 1 -0.2644302115416 1.59521198729957 -0.0947293001624206 0.129246405745766
AT1G43940_at 0.339588214138320 0.558435908861479 0.598453601020905 0.535221966498806 0.62784540462785 0.342369621577094 0.751147475105435 0.710040860833817 0.536323830222189 0.87292098600876 0.466089604818734 0.718112229101969 0.633510200393492 0.471284798993995 0.700286237202205 0.74048195144789 0.704062012904645 0.728627267586495 0.787578797292593 0.200476614166342 0.195241761411835 0.200801014716395 0.197587714461935 0.195241761411835 0.204643157968686 0.208137133122719 0.195346154733038 0.202815854378057 0.200728368082913 0.200054634489947 0.195241761411835 0.201393463358438 0.200588836511984 0.195382741040848 0.19544055284656 0.203414393825191 0.204984745827646 0.201623335644872 1 1|0 +|/ 16668904 16670231 16669767.8 16668858 16670257 + gene protein_coding_gene FALSE TRUE AT1G43940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42540.1); similar to Retrotransposon gag protein [Medicago truncatula] (GB:ABE81001.1) -0.075399108169301 -0.840198970089134 0.418875927316378 1 -0.264557830837174 1.24667854440664 -0.075399108169301 0.0636028815036097
AT2G37260_at 1.10748986078213 0.97634596615734 0.705048323824039 1.37420159516951 1.18418267218799 0.858408858860986 1.01178319051021 1.17916763701249 1.21488810159055 1.14564583537254 1.05152126151166 1.37561062294212 1.60818405927032 1.04715237090657 1.25216515280258 1.32404914148418 1.38848807792936 1.13223769555474 0.76387947054971 0.173320471065231 0.172745730684937 0.191583852784307 0.182714962423419 0.172416886129103 0.183965182543681 0.172754752513817 0.171982219631192 0.174683616988148 0.179565711121735 0.172906369226126 0.181506965983333 0.172419744608972 0.174090569468367 0.184467178058771 0.169897267673434 0.171581862965561 0.180517472299461 0.175208785385205 2 2 + 15653201 15653841 15653488.545 15652486 15654007 + gene protein_coding_gene FALSE TRUE AT2G37260.1|AT2G37260.2 TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor|TTG2 (TRANSPARENT TESTA GLABRA 2) Encodes a protein similar to WRKY transcription factors that is expressed in the seed integument and endosperm. Mutants are defective in proanthocyanidin synthesis and seed mucilate deposition. Seeds are yellow colored. Seed size is also affected; seeds are reduced in size but only when the mutant allele is transmitted through the female parent. Identical to WRKY transcription factor 44 (WRKY DNA-binding protein 44) (TRANSPARENT TESTA GLABRA 2) (WRKY44) [Arabidopsis Thaliana] (GB:Q9ZUU0); similar to WRKY3 (WRKY DNA-binding protein 3), transcription factor [Arabidopsis thaliana] (TAIR:AT2G03340.1); similar to WRKY transcription factor 44 (WRKY DNA-binding protein 44) (TRANSPARENT TESTA GLABRA 2) (GB:Q9ZUU0); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.0963593054288402 0.839916915119971 0.419027349099107 1 -0.2647821398489 2.20652710488198 0.0963593054288402 0.133948217104549
AT4G37340_at 1.00723265533180 1.31295257339549 1.12657248563991 1.17024246105174 0.940336880712897 1.27817819556226 0.790501016751798 1.34252586235778 1.10775046188587 1.34985504052136 0.941953601416576 1.20005588077090 0.636855026739146 1.08737568524133 0.744347001878128 0.643423058210019 0.86704504908446 0.834428956408742 0.754522985422366 0.209266736997789 0.208140507364081 0.212223663247016 0.209094520842571 0.212523594360126 0.208140507364081 0.208140507364081 0.216174055021198 0.213240616698768 0.226059691270118 0.211662807968419 0.211614217120031 0.211398560172943 0.208140507364081 0.212254834674095 0.213735923095672 0.212317721518218 0.220465535011904 0.208140507364081 4 4 - 17564960 17565491 17565275.182 17564844 17566781 - gene protein_coding_gene FALSE TRUE AT4G37340.1 CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to cytochrome P450 [Cicer arietinum] (GB:CAB43505.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0928722423460233 -0.83988227863189 0.419045946304294 1 -0.264809680593945 2.09114028055639 -0.0928722423460233 0.124098405501588
AT1G49030_at 1.13845478552195 0.765422982037366 1.38851918530184 1.66489720540035 1.21768419665811 1.31088433644493 1.23457988411308 1.01037571498936 1.19042444346274 1.51601187528409 1.01991002842993 1.35375995609254 1.18041094625648 1.45442266694863 1.20769064815184 0.935367089838909 1.68217547943027 1.32207772742824 1.68347442262600 0.189693049494366 0.191575349606046 0.193893562956079 0.198502275253716 0.191327525432968 0.187230153973670 0.193306546431894 0.18715670539711 0.195657257048667 0.193047438783924 0.194991907427585 0.18715670539711 0.190414389627571 0.191439147469242 0.192482448267679 0.18715670539711 0.192091211908891 0.198314247187467 0.191368703527422 1 1|0 +|/ 18140616 18141300 18140941.222 18140373 18141614 + gene protein_coding_gene FALSE TRUE AT1G49030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18460.1); similar to Os02g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047231.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE80519.1); similar to Os02g0580000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047232.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.082230563325182 0.839787043724435 0.419097083190944 1 -0.264885400283036 2.58274248544823 0.082230563325182 0.0906666583419885
AT4G17420_at 7.13166499412672 6.96986580460175 6.79693692204245 6.85560311781856 7.18337750229752 6.66225112789539 6.58064671945277 6.57003203440259 6.68182391515553 6.59551022972229 6.80688442380466 6.52345403350199 6.14112176565663 6.72383042214861 6.5883558775063 6.19129760819549 6.22145323358611 6.16582029461712 6.66868991086516 0.185574305950762 0.189100302080558 0.201871992768579 0.190632253466965 0.194394039243152 0.190322608611264 0.192560166360529 0.199857328327614 0.222295922518466 0.190381089561407 0.18414501650792 0.185773789201206 0.193682319434919 0.189536315229408 0.191765999343917 0.189114201693477 0.203713172275640 0.193526495027274 0.184422965628341 4 0|4 /|- 9722567 9723427 9722983.75 9722368 9724652 - gene protein_coding_gene FALSE TRUE AT4G17420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47420.1); similar to hypothetical protein 31.t00054 [Brassica oleracea] (GB:ABD65092.1); contains InterPro domain Protein of unknown function DUF124; (InterPro:IPR002838) -0.0834538492515104 -0.839454859784091 0.419275483939535 1 -0.265149455801564 13.3782732241421 -0.0834538492515104 0.0949920474163303
AT1G34480_at 0.232300922450398 0.296881564486089 0.500192619661799 0.428836786293982 0.28960021258229 0.666667557504867 0.75386028443118 0.244850764494479 0.751539482489272 0.589925303109163 0.34342170141222 0.522801105239314 0.21270352386033 0.479503916001148 0.168181277467309 0.691827988263342 0.679763520643937 0.118209521569958 0.663052098723807 0.201927789492158 0.200977630770120 0.203846734536231 0.204460371846112 0.199748942584879 0.202634555443171 0.207106405495919 0.203871692722399 0.199748942584879 0.215818190382968 0.202323248977187 0.211317844550207 0.206917175159247 0.212477168091658 0.203313947723502 0.201471912637543 0.199748942584879 0.216114131970725 0.213476177934930 1 1 + 12608491 12608909 12608665.818 12607254 12609062 + gene protein_coding_gene FALSE TRUE AT1G34480.1 DC1 domain-containing protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G21210.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315); contains InterPro domain DC1; (InterPro:IPR004146) -0.0883849077108438 -0.839453284117622 0.419276330279266 1 -0.265150708094390 0.961760771028773 -0.0883849077108438 0.110881025122333
AT4G16120_at 4.9877898077442 4.65001489610056 4.76922800375387 4.62726435021156 4.27183836639261 5.33293064535829 4.89371259367114 4.90509569705846 5.21868271444961 4.95653718415277 6.0043601228488 5.27633460154641 5.42026680043496 5.42032369209773 5.56087979221843 4.72660285668276 5.1456843143724 5.43307916498909 4.89883995575226 0.211018394112463 0.198232242053894 0.213610196594800 0.204903358449611 0.204323682514540 0.199130336182092 0.202711073171735 0.197606503225395 0.206688189357295 0.206172529405598 0.198465758430712 0.19925843580801 0.197787431308427 0.211061553803247 0.196541951219340 0.205827782494334 0.204191367458999 0.201748137882864 0.201467694750745 4 4 - 9116642 9117174 9116884.636 9116313 9119325 - gene protein_coding_gene FALSE TRUE AT4G16120.1 ATSEB1 putative membrane-anchored cell wall protein Identical to COBRA-like protein 7 precursor (COBL7) [Arabidopsis Thaliana] (GB:Q8GZ17;GB:O24605); similar to phytochelatin synthetase-related [Arabidopsis thaliana] (TAIR:AT3G20580.1); similar to phytochelatin synthetase-related [Arabidopsis thaliana] (TAIR:AT3G16860.1); similar to COBL9/MRH4/SHV2 (COBRA-LIKE 9), hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding [Arabidopsis thaliana] (TAIR:AT5G49270.1); similar to Phytochelatin synthetase-like conserved re (GB:ABE84746.1); similar to roothairless 3 [Zea mays] (GB:AAQ81633.1); similar to Os03g0301200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049863.1); contains InterPro domain Carbohydrate-binding; (InterPro:IPR008965); contains InterPro domain Phytochelatin synthetase-like conserved region; (InterPro:IPR006918) 0.119958446408052 0.839038409068757 0.419499212584698 1 -0.265480367357558 10.0037983131699 0.119958446408052 0.19427588341029
AT2G01350_at 9.2776158943719 9.1160318949011 9.47024881129567 9.2096759598305 8.94934440914022 8.71000258060573 9.07841432253478 9.12077682594335 8.39946795374026 9.10438248550523 8.76671856039188 8.95759139427164 8.74477466511986 9.0010908670855 8.99462354091826 9.262255277798 8.98575022790975 9.03755676807045 8.75530643054504 0.145693188488709 0.137921879003343 0.146904972371159 0.142265710214829 0.147837179532158 0.148784318829778 0.144608089454185 0.143967375332816 0.145783430003241 0.141079197325998 0.142646361946363 0.139116723830056 0.144259557151321 0.145561506894592 0.140872935827702 0.134023044384122 0.157544176116967 0.139648646873563 0.145910781818531 2 0|2 /|- 165350 166244 165794.125 165140 167258 - gene protein_coding_gene FALSE TRUE AT2G01350.1|AT2G01350.2|AT2G01350.3|AT2G01350.4 QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE); nicotinate-nucleotide diphosphorylase (carboxylating)|QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli. similar to quinolinate phosphoribosyltransferase [Nicotiana tabacum] (GB:BAA92153.1); contains InterPro domain Nicotinate-nucleotide pyrophosphorylase; (InterPro:IPR004393); contains InterPro domain Quinolinate phosphoribosyl transferase; (InterPro:IPR002638)|similar to putative quinolinate phosphoribosyltransferase [Nicotiana tabacum] (GB:CAH04307.1); contains InterPro domain Nicotinate-nucleotide pyrophosphorylase; (InterPro:IPR004393); contains InterPro domain Quinolinate phosphoribosyl transferase; (InterPro:IPR002638) 0.0761755392728687 0.838591634678677 0.419739321089483 1 -0.265835215403397 17.9774375636408 0.0761755392728687 0.0677098774654022
AT1G32490_at 6.19486028905373 6.35479473953543 6.51577705864498 6.26895402569369 6.83232284688795 6.35717080249944 6.44679282536127 6.05618025392111 5.23034937816217 5.7300198729226 5.31409329577927 5.77233256858169 5.18218149957141 5.65721712192742 5.12332333454327 5.51379199465396 5.5086972373681 5.63751643600492 5.57800173589978 0.232660764811042 0.220139438075522 0.226500073467032 0.221855892638174 0.221237364253613 0.230440429383298 0.224874223275430 0.228114305513067 0.232967608673821 0.233676668312566 0.221820237869827 0.225602069944208 0.222189397758764 0.220761308891578 0.237038096416943 0.223454510280642 0.257165787857297 0.236225784321798 0.223126971310257 1 1|0 -|/ 11742491 11743492 11743033.556 11742034 11749686 - gene protein_coding_gene FALSE TRUE AT1G32490.1 EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. similar to MEE29 (maternal effect embryo arrest 29), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT2G35340.1); similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT4G16680.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Danio rerio] (GB:NP_956318.1); similar to PREDICTED: similar to Putative pre-mRNA splicing factor RNA helicase (ATP-dependent RNA helicase #3) (DEAH-box protein 16) isoform 6 [Bos taurus] (GB:XP_872459.1); similar to RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01767.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.090626506761265 0.838427772271959 0.419827408258994 1 -0.265965321019634 11.866573862724 0.090626506761265 0.117988294677288
AT3G05270_at 6.02821632171118 6.28399243384622 5.86058114105062 5.96481124311331 5.9777334300174 5.95041092935254 5.77451288576238 6.10568563733961 5.05244591225990 5.97017524626455 5.9396662836567 6.04513330150913 5.53960423389333 5.94084932708282 5.60173087748538 5.86854740970097 6.00832095210876 5.34685547365664 5.54021730044892 0.173741678127175 0.172777025329511 0.167762749711871 0.174587167516223 0.171129353667970 0.175676981925693 0.175312781782672 0.172804238030846 0.184769616071957 0.170232665755023 0.173620009222280 0.170459188544483 0.173583705348244 0.179245796695489 0.167762749711871 0.169873399953611 0.173324104429363 0.173414161236148 0.172780859988532 3 3 - 1500839 1501384 1501074.182 1500809 1503326 - gene protein_coding_gene FALSE TRUE AT3G05270.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G77580.2); similar to Protein of unknown function DUF869, plant [Medicago truncatula] (GB:ABE86171.1); contains InterPro domain DNA topoisomerases I, dispensable insert, eukaryotic-type; (InterPro:IPR009054); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) 0.0778373478071072 0.838290698539305 0.41990110423239 1 -0.266074139636047 11.6468853204631 0.0778373478071072 0.074776286272518
AT3G12200_at 8.67311143960421 8.61030507309264 8.6048101541091 8.57627755563803 8.7760062419005 8.69762541577617 8.54179829268732 8.8123699708576 7.99419946192866 7.97209363662844 8.09906416737263 8.44667203042702 8.35358284546901 8.20328192251148 7.79585566251786 8.46848922432773 8.04442619360764 8.10579121160516 8.18017107201575 0.134695832312125 0.136083802004284 0.141415741253399 0.139561137125586 0.134695832312125 0.137346839454235 0.138665082152646 0.134695832312125 0.148477448552004 0.142263590113985 0.138408736623698 0.137315099944621 0.143720974861922 0.138951288885046 0.138661736357657 0.137428245422353 0.143339149815659 0.147659683956353 0.143654706956633 3 3 - 3887200 3887696 3887418.455 3886999 3890833 - gene protein_coding_gene FALSE TRUE AT3G12200.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20860.1); similar to serine/threonine-protein kinase Nek4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17425.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0725538324171862 0.838221795525335 0.419938152354296 1 -0.266128833775832 16.7807714166686 0.0725538324171862 0.0501892346496002
AT3G04760_at 9.70403029009519 9.7629603841818 9.40893719304943 9.55359174401691 9.77622742047226 9.40737307234682 9.8418254466129 9.78774143793713 9.56421901144243 9.37572279741193 9.35207957787537 9.7137272202051 9.16658076208165 9.3657823883938 9.4389443541452 9.6569219758198 9.31949919407552 9.36320652381612 9.07324137892605 0.123253135721279 0.126116173805242 0.131594072455678 0.125561427013300 0.123672293579146 0.145440116615483 0.125783208656673 0.130359211630993 0.136191548551642 0.132211089480813 0.125818281809915 0.123910363062674 0.124429993729642 0.131114286417839 0.129974056459121 0.124059752423024 0.13703124212398 0.130026861993763 0.126881387073203 3 3 - 1303893 1304390 1304133.727 1303581 1305884 - gene protein_coding_gene FALSE TRUE AT3G04760.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15828.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0766210059719796 -0.837764626599145 0.420184020849593 1 -0.266491628347179 19.0352461129949 -0.0766210059719796 0.0699484093767705
AT3G17000_at 9.0343425440132 9.23399427038532 9.56194316658986 9.6810946735646 9.72600494116843 9.62555761718257 9.23166950958186 9.16980671988586 9.00235498826592 8.83918444875768 8.47913575296094 8.20283247911459 8.7448892319172 8.68130470774193 7.83585794026376 8.77327358430683 8.83191456228413 8.67948386200314 8.75796755879282 0.112658702001361 0.116832071080396 0.120619882727296 0.114518488340525 0.117598116771686 0.122857191490284 0.114228926565625 0.119308177780579 0.124360664104865 0.114369349730914 0.115936462054443 0.126612211243771 0.119613343290892 0.126136711602711 0.129560973998882 0.116382638040674 0.119110143787794 0.120087627888418 0.112562578172465 3 3 + 5798362 5799389 5798934 5797185 5799689 + gene protein_coding_gene FALSE TRUE AT3G17000.1 UBC32 (ubiquitin-conjugating enzyme 31); ubiquitin-protein ligase similar to UBC34 (ubiquitin-conjugating enzyme 32) [Arabidopsis thaliana] (TAIR:AT1G17280.2); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE83180.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.0716405108975326 0.83766095178624 0.420239791293876 1 -0.266573877409315 18.1055961038029 0.0716405108975326 0.0451186940330742
AT2G42920_at 2.50002578234254 2.67555076311047 2.24488496840089 2.71443815820269 2.36822277846728 2.05558679780882 2.56549896831829 2.19837154917153 2.57727454329741 2.53266922434152 2.76854401135925 3.13225119361065 3.03237364206623 3.09567306867694 2.60916372543539 2.95739777332924 2.74781292104423 2.47540606696851 2.48208553344698 0.201642028018487 0.201830034661255 0.207385924569160 0.198790579744337 0.200908758088326 0.203018468649636 0.201237276130921 0.200009873438088 0.201546644164213 0.196177936039679 0.200487010477277 0.202367737964258 0.199405915498626 0.206133244283151 0.202738263991516 0.210344517543479 0.196177936039679 0.201770522305610 0.204303917332144 2 2 + 17866870 17867430 17867120.818 17865775 17867461 + gene protein_coding_gene FALSE TRUE AT2G42920.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G48910.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97777.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0912863883001037 0.837086466770552 0.420548917671135 1 -0.267029477187155 5.10682458773112 0.0912863883001037 0.120371059071545
AT4G21270_at 1.44943155193142 1.58588251731746 1.70844817521453 1.38425249581939 1.77941188764947 1.45131072597117 1.55056248123398 1.51925025864065 1.57769333485928 1.38963100739105 1.72301416301530 1.67567388490284 1.43976134977683 1.29067403236029 1.64087564072219 1.65105483653847 1.97389974195486 1.62211763463277 1.59810261169146 0.22207241196728 0.226467075839165 0.222789726003809 0.227592834219675 0.219751985383628 0.218016989587798 0.225698375943048 0.217746390302487 0.226581842208375 0.219325856346111 0.220586140560028 0.217092982974183 0.216421838774018 0.220236148569328 0.216146713033839 0.220815853403935 0.229085867499036 0.220357662666669 0.219683985820839 4 4|0 -|/ 11329592 11330577 11329991 11329373 11334145 - gene protein_coding_gene FALSE TRUE AT4G21270.1 ATK1 (ARABIDOPSIS THALIANA KINESIN 1); microtubule motor Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis. Identical to Kinesin-1 (Kinesin-like protein A) (ATK1) [Arabidopsis Thaliana] (GB:Q07970); similar to ATK5 (Arabidopsis thaliana kinesin 5), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G05190.1); similar to ATK3 (ARABIDOPSIS THALIANA KINESIN 3), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G54670.1); similar to ATK2 (ARABIDOPSIS THALIANA KINESIN 2), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G27180.1); similar to H0323C08.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86215.1); similar to Kinesin, motor re (GB:ABE93171.1); similar to Os04g0629700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053970.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain t-snare; (InterPro:IPR010989) 0.079949522361723 0.836991466821692 0.420600051178692 1 -0.267104791437469 3.12804020928986 0.079949522361723 0.0834174697996208
AT4G13160_at 3.9232043461924 3.62550717168443 3.87178079429007 3.85199081564111 4.57452693422412 4.45218641441888 4.08058349427273 3.87423684687923 4.28212143170884 4.22315746572695 4.30206949667333 4.16860922236748 4.54168361670095 4.31123784292173 4.10940571535752 4.46605989640033 3.8310068514374 3.72311097807620 4.52092358016738 0.200021884533267 0.208836340606379 0.207533552856573 0.197623620010992 0.199216412911215 0.199890907660634 0.200247384395591 0.200548262582877 0.211290801099303 0.195600202609888 0.203414803709113 0.199070360003502 0.199872349552848 0.196542324520911 0.201580188926259 0.195600202609888 0.202179735292873 0.195600202609888 0.207879541313106 4 4 + 7654324 7654789 7654538 7653643 7654921 + gene protein_coding_gene FALSE TRUE AT4G13160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13630.1); similar to Os03g0708700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051039.1); similar to Protein of unknown function, DUF593, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95673.1); similar to Os04g0311500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052441.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.0756593674219118 0.836558806250799 0.420832982507889 1 -0.267447702917488 8.2936098247135 0.0756593674219118 0.0662511009220553
AT2G47760_at 6.84495316397904 7.32070090704119 6.93721480294465 6.54663440852064 7.06981114213542 6.35870445029865 6.14468884028738 6.29154993644507 6.82194702508752 6.03219044732832 6.39094317378448 6.6177652216244 6.01465272605902 6.42370329610918 6.23497307668471 6.28832095381249 4.76720677696054 6.28924405784928 6.40932189105562 0.213891229601290 0.213603220454664 0.216320092718730 0.218115271417293 0.217162048592375 0.215593182488851 0.220384655109915 0.212959604772228 0.221006712543996 0.216809164251226 0.211969348666695 0.210977392843708 0.213179167809664 0.217708596907071 0.221887791261844 0.210977392843708 0.252853769143496 0.210977392843708 0.232581593672903 2 2|0 -|/ 19572779 19573703 19573122.1 19572552 19575335 - gene protein_coding_gene FALSE TRUE AT2G47760.1|AT2G47760.2|AT2G47760.3 ALG3 family protein|catalytic similar to Mannosyltransferase (ISS) [Ostreococcus tauri] (GB:CAL57845.1); contains InterPro domain ALG3; (InterPro:IPR007873) -0.107591985879987 -0.836543770481254 0.420841078865663 1 -0.267459616964171 12.9640343472153 -0.107591985879987 0.164732212345769
AT3G10920_at 10.4600352146621 10.4063169156059 10.3074869110965 10.4012901962534 10.2689238438573 10.340498654121 10.4928680638598 10.6482807141582 10.3377379761562 10.3882233322563 10.6324610037176 10.6004052445965 10.3787558798357 10.5658766654283 10.9087139032562 10.5374947347933 10.5056606570547 10.6567154451923 10.1314412460341 0.0807033529313803 0.0807033529313803 0.0831376183018968 0.0822333871125026 0.0841505814832164 0.083438891098483 0.0843407138983701 0.0807033529313803 0.0884065783938675 0.0857348878517182 0.0807033529313803 0.0809129528034825 0.0854231858270935 0.0861625761617904 0.082818549772047 0.0807033529313803 0.0845412868817501 0.0807368693271964 0.0820513074392813 3 3|0 +|/ 3418116 3419379 3418773 3417959 3419858 + gene protein_coding_gene FALSE TRUE AT3G10920.1|AT3G10920.2 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); manganese superoxide dismutase manganese superoxide dismutase (MSD1) Identical to Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1) (SODA) [Arabidopsis Thaliana] (GB:O81235;GB:Q9SRK3); similar to superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative [Arabidopsis thaliana] (TAIR:AT3G56350.1); similar to superoxide dismutase [Raphanus sativus] (GB:AAL07333.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) 0.0700671322563273 0.836445131617975 0.420894195833242 1 -0.267537771830953 20.8577432108100 0.0700671322563273 0.0350241252014606
AT3G02170_at 8.71306419877414 8.97250908432818 8.19966667628074 8.4463219815089 9.09861045729534 8.83642400154202 8.5765442001103 8.66308464513192 9.17822320598339 8.85126854535597 9.53695122517905 9.02942604287533 9.23948198535338 9.38249376074564 8.52763770814454 9.16589714636815 8.90123729936392 8.96757400840898 9.46477638499095 0.145242205357988 0.147107509502479 0.148643194031456 0.145870422767703 0.147400846145391 0.153056150380362 0.147640062087118 0.157599811103368 0.155682229865110 0.145080640190334 0.149735379675094 0.147930529858403 0.147184262614536 0.150390989702091 0.149304606891738 0.148032725261528 0.160321818672142 0.1552390400696 0.143326438293676 3 3 - 396406 396769 396603.182 396019 399786 - gene protein_coding_gene FALSE TRUE AT3G02170.1 LNG2 (LONGIFOLIA2) Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function. similar to LNG1 (LONGIFOLIA1) [Arabidopsis thaliana] (TAIR:AT5G15580.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96924.1); contains InterPro domain Moesin; (InterPro:IPR008954) -0.0784817006589733 -0.83585082691957 0.421214323703489 1 -0.26800848961864 17.8175748768706 -0.0784817006589733 0.078235537735806
AT1G49710_at 8.15528020058448 7.85101745997454 8.03963653740022 7.74945548069662 8.11284801343647 7.64119326593833 7.41154062109845 6.96642492289868 6.75317817148011 6.74486290845277 6.51287486177211 6.83779915792521 6.7709625416025 7.02248193286012 6.16415987442981 6.92306132934356 7.02717634334403 6.87302869739977 7.09559592637582 0.206677296667826 0.203118661869562 0.207265272559761 0.206991427526037 0.20508607115463 0.204928562164591 0.209811996063558 0.203118661869562 0.217211470475685 0.207087190054737 0.203119321867679 0.204786179957105 0.203118661869562 0.212666503902605 0.210541350633081 0.203223978435253 0.207526802121579 0.203284377919507 0.203118661869562 1 1 - 18395290 18395973 18395585.636 18395006 18397596 - gene protein_coding_gene FALSE TRUE AT1G49710.1 FUT12 (fucosyltransferase 12); fucosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with core α1,3-fucosyltransferase activity. Identical to Putative fucosyltransferase-like protein (FucTB) (FucT2) (AtFUT12) (FUT12) [Arabidopsis Thaliana] (GB:Q9FX97); similar to FUT11 (Fucosyltransferase 11), 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G19280.1); similar to Fuct c3 protein [Vigna radiata var. radiata] (GB:CAB52254.1); similar to alpha 1,3 fucosyltransferase [Populus alba x Populus tremula] (GB:CAI70373.1); similar to alpha 1,3 fucosyltransferase [Medicago sativa] (GB:AAL99371.1); contains InterPro domain Glycosyl transferase, family 10; (InterPro:IPR001503) 0.0958074733969705 0.835716610648999 0.421286643163676 1 -0.268114755040756 14.5564189433056 0.0958074733969705 0.133753125314602
AT2G21230_at 7.632522173346 7.54454197272791 7.72632855458124 7.74135463805515 7.9653735911441 7.69949169688057 7.70253821845553 7.75735877644861 7.34396343354913 7.24303648767359 7.21155205012031 7.47392709506497 7.3086274406101 7.30814871795825 7.31773861524037 7.20688555308710 7.19526902388593 7.35121154362678 7.24152378328848 0.167865966352747 0.176655996277668 0.176099135293748 0.168463365913144 0.168261352354548 0.180425282709534 0.173204020143885 0.178453160904452 0.167007331219529 0.175165315507030 0.177171655628239 0.170315938080097 0.174075271115071 0.172358241646393 0.173600419946320 0.173910653200641 0.178804389006058 0.17681452907553 0.169431685983826 2 2|0 -|/ 9101031 9102148 9101626.667 9100705 9103428 - gene protein_coding_gene FALSE TRUE AT2G21230.1|AT2G21230.2 bZIP family transcription factor similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G38900.3); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE79946.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G38900.3); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0721961358497882 0.83559264570672 0.421353446317255 1 -0.268212890806721 15.0076109892647 0.0721961358497882 0.0494539164392654
AT4G12530_at 0.243019842507929 0.422627101639654 0.459559377329061 0.433184216567322 0.677076048609229 0.37457064364942 0.712018537493141 0.258087880519554 0.515631151970662 0.373638997120443 0.251423817143632 0.543689531148828 0.781801664367796 0.646934297117897 0.43784722042609 0.393590320083712 0.266407002352563 0.74031337684759 0.359143303396986 0.220424562537223 0.215370121860693 0.223027121517181 0.214562862275106 0.216924628492405 0.215629946072631 0.218857362444757 0.212078332089956 0.231190231040053 0.221113794436532 0.214169216740803 0.215828661695436 0.221891555001019 0.230989363387869 0.21291847979906 0.212491124762469 0.216352147038992 0.231698522962973 0.224499686696399 4 4 - 7428168 7428463 7428330.545 7428024 7428560 - gene protein_coding_gene FALSE TRUE AT4G12530.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12510.1); similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G12520.1); similar to DC2.15 like protein [Daucus carota] (GB:BAA99575.1); similar to P-rich protein NtEIG-C29 [Nicotiana tabacum] (GB:BAB16431.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.0843861585943358 0.835351064593786 0.421483651752423 1 -0.26840409999041 0.909462316630435 0.0843861585943358 0.0994901749637306
AT2G29550_at 5.19503269800023 4.95542588622739 3.95008286900806 3.85781335619677 4.45209302674523 4.23400865016488 5.2863344703049 5.55717213415702 5.98177214600103 5.68615790536277 8.30522688451405 7.77573291866374 6.83102591996704 6.84639931770506 7.77532425886658 6.53994396019984 5.49371469539034 7.11561945258577 5.74785812628650 0.239029303765958 0.220382580044121 0.233097699140358 0.223973528859384 0.218991869671351 0.218991869671351 0.222832183098411 0.225582180496917 0.225046901741864 0.219023030855408 0.23077942995066 0.22818927863491 0.220672814404896 0.223094715668391 0.232077453032649 0.218991869671351 0.233022901596018 0.226254214804738 0.218991869671351 2 2 - 12651411 12651838 12651659.455 12651124 12653114 - gene protein_coding_gene FALSE TRUE AT2G29550.1 TUB7 (tubulin beta-7 chain) Encodes a beta-tubulin that is expressed in leaves, roots and flowers. Identical to Tubulin beta-7 chain (Beta-7 tubulin) (TUBB7) [Arabidopsis Thaliana] (GB:P29515); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB8 (tubulin beta-8) [Arabidopsis thaliana] (TAIR:AT5G23860.1); similar to beta tubulin [Setaria viridis] (GB:CAE52517.1); similar to Tubulin beta chain (Beta tubulin) (GB:P93176); similar to Beta-tubulin [Zinnia elegans] (GB:BAA82637.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.0775594392297342 0.835227469536068 0.421550276444095 1 -0.268501905714213 11.1313134622856 0.0775594392297342 0.0748026502702912
AT2G35390_at 3.56440929323512 3.39269447660916 3.51319844171976 3.31352186425208 3.25787749234758 3.32359041128055 3.54081161650684 3.2153144614406 2.58858763541968 2.53362165746765 2.49304546724004 2.84048389507829 2.55137490633661 2.30005015706867 3.14485643479916 3.02181868417967 3.29945889058375 2.75522245285475 2.58821622179883 0.239285567290936 0.234178264764892 0.233527254237147 0.228432789225108 0.230971458128209 0.231329811590832 0.235565602396611 0.235473992986213 0.237028617253034 0.221855211349649 0.227814956585800 0.222885826995891 0.230383180284970 0.229684802701202 0.239947419494783 0.223414071133110 0.236560566235448 0.228820103542445 0.221921057419783 2 2 - 14904477 14904606 14904523.727 14902358 14904901 - gene protein_coding_gene FALSE TRUE AT2G35390.1|AT2G35390.2|AT2G35390.3 ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)|ribose phosphate diphosphokinase Identical to Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1) (PRS I) (PRS1) [Arabidopsis Thaliana] (GB:Q42581;GB:Q67XL7;GB:Q67YH7;GB:Q84LR8;GB:Q8GUH0); similar to ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) [Arabidopsis thaliana] (TAIR:AT1G32380.1); similar to Ribose-phosphate pyrophosphokinase 2, chloroplast precursor (Phosphoribosyl pyrophosphate synthetase 2) (GB:Q9XG99); contains InterPro domain Phosphoribosyl pyrophosphate synthetase; (InterPro:IPR000842); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) 0.0771933066204791 0.835140305847631 0.421597266821235 1 -0.268570874262075 6.07564260679713 0.0771933066204791 0.0733440086516093
AT4G12740_at 0.639306493214213 0.939148632439282 0.52347998829068 1.52691378372917 1.01772931571927 0.853762196869982 0.83077726299394 0.743601767881355 1.09735887774371 1.01823839720896 1.23035235187692 0.99833000166441 1.11602554125832 1.09724135188800 1.12813149539978 1.3434810435701 0.671450073817104 1.14528208780185 1.04406864948464 0.202631552693722 0.204258865219053 0.201981336294758 0.196891841827402 0.196891841827402 0.200734439559612 0.199147704932006 0.196891841827402 0.201337993585427 0.207846666295429 0.198637161502224 0.197718197366627 0.203209950611828 0.20929827909994 0.199323939420270 0.196891841827402 0.197410880037041 0.204084929625811 0.198559912480097 4 4|0 -|/ 7494656 7495121 7494854.1 7494575 7497593 - gene protein_coding_gene FALSE TRUE AT4G12740.1 adenine-DNA glycosylase-related / MYH-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03710.1); similar to Os12g0211400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066403.1); similar to MutY homolog (E. coli) [Mus musculus] (GB:AAH57942.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.115163775308601 0.835038119066142 0.421652360692152 1 -0.268651721903658 1.95659428925324 0.115163775308601 0.184062934654925
AT1G10400_at 3.01898319364631 3.21282882936555 3.10728656026998 2.95931121482946 2.98106634603939 2.9634808739239 2.98131835867857 3.22046987092356 3.14704681334194 2.99302119211716 2.75680054286519 2.61936745494816 3.24350345968954 2.89989242504523 2.99471122480459 2.74591893009195 2.99644533527665 2.97404894592374 2.69855641486634 0.197656511533773 0.198947043153801 0.197144681511011 0.192289441567776 0.199861679219141 0.19439906786799 0.194282336992259 0.192726010648149 0.19780489930864 0.193996435038229 0.209104476013037 0.19651010314669 0.195011644310646 0.195733796385521 0.198430302381542 0.193801274650037 0.196570321304667 0.200196755394576 0.21039090232276 1 1 - 3415047 3415411 3415196.455 3414853 3416285 - gene protein_coding_gene FALSE TRUE AT1G10400.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G14860.1); similar to Os09g0329700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062898.1); similar to putative UDP-glucose glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD54417.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Tudor; (InterPro:IPR002999) -0.0739929573328314 -0.834925825963704 0.42171290893647 1 -0.268740555485632 5.98061524592915 -0.0739929573328314 0.0591876115763345
AT2G20240_at 1.96178974591124 2.05208214432757 1.70650414180473 1.63084717909955 1.54657977150080 2.09274568258547 2.15766717346909 2.29061235150824 2.31704729072652 2.13400660976866 2.68901067394580 2.79475260700189 2.29399731565655 2.33738054462056 2.79431835101776 2.27287843186258 2.09081184074654 2.80263775089799 2.46907340717046 0.171648875257732 0.174931926263820 0.177684864216598 0.175816169878259 0.172484426351133 0.174329638129535 0.177891571073991 0.176782013228907 0.174450763658895 0.174399025387937 0.171648875257732 0.179529882770291 0.171648875257732 0.177403742598674 0.180078386853171 0.176376469177494 0.186926018145629 0.179081914396973 0.176641601559197 2 2 - 8734859 8735355 8735175.818 8734707 8737581 - gene protein_coding_gene FALSE TRUE AT2G20240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28760.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89949.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain gb def: Hypothetical protein At4g28760 (PTHR21726:SF7) -0.0843021615714482 -0.834820725134668 0.421769584397399 1 -0.268823689935313 4.3379447947878 -0.0843021615714482 0.0993894857647347
AT1G51880_at 1.40807829796153 1.46326463444966 1.42687942249711 1.35373199658244 1.59604647836082 1.53013211626819 1.45980961128010 1.36265626473250 1.91761071705391 1.37238952982285 1.77540282642398 1.46738074304482 1.39212698034086 1.22260907156950 1.28232703050069 1.61828010193347 1.52921298038439 1.70187550848776 1.77903638308695 0.18017408366003 0.174690575107411 0.181867831720850 0.183004283774108 0.176381050957025 0.183484595641648 0.177093186360827 0.179185064580521 0.180462823013214 0.179088951172622 0.174752409807396 0.175572345166817 0.184498306753840 0.179126279289199 0.179798500394376 0.181900927794704 0.182154695831029 0.182487906427800 0.184346832794302 1 1 - 19273862 19274418 19274075.364 19273862 19277737 - gene protein_coding_gene FALSE TRUE AT1G51880.1 leucine-rich repeat protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G51870.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51890.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51860.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0688908349988491 -0.83479378017422 0.421784115247874 1 -0.268845001853550 3.04424024376167 -0.0688908349988491 0.0257726874961161
AT3G21970_at 1.64005598998681 1.42213100437023 1.70667226442667 1.77324645265034 1.53099664766499 1.64503209409702 1.79640687188827 1.6073332666256 1.80478240588370 1.81189483935023 2.06280692663552 1.63327976064367 1.29923378796242 1.55726394923054 1.34445003086213 1.45724318749438 1.81445373270196 2.13679896012956 1.95408028978921 0.191814466227119 0.183802136769873 0.189344499509404 0.189073164779353 0.185874972155268 0.188709055523862 0.193114548751815 0.191775037722578 0.190371781349725 0.183802136769873 0.184654100802771 0.183802136769873 0.189021441262926 0.189427830414199 0.197888181778936 0.186505847335043 0.187282058950619 0.185999801460459 0.196218267751044 3 3 + 7742669 7743399 7743098.818 7742466 7743608 + gene protein_coding_gene FALSE TRUE AT3G21970.1 receptor-like protein kinase-related similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G29040.1); similar to Os07g0537500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059875.1); similar to serine/threonine kinase receptor precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57307.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -0.0731114024457495 -0.834567358075824 0.421906233174701 1 -0.269024065091451 3.40028955911303 -0.0731114024457495 0.0549094384900272
AT1G30300_at 4.10461064839515 3.696477105924 4.09019867356962 4.20112877053001 4.31978835069502 3.71679080181269 4.42506263420272 3.98414988812303 3.57061531186115 3.76167914547917 3.72581674450871 4.0585600499068 4.17859919552401 3.4966335407947 3.90011871948873 3.94901778285577 4.06525390688576 3.92289953793947 3.88559172183294 0.229927134318271 0.234063196147828 0.233991831442176 0.238679391432323 0.233173816793069 0.231952701994588 0.232074399312314 0.227391618010297 0.245190824055058 0.230039901326321 0.234486685365096 0.226962649748829 0.23099808629622 0.233072288101602 0.246492472556895 0.230486714471146 0.227242480708808 0.226962649748829 0.234629465282075 1 1|0 +|/ 10673901 10674999 10674311.375 10672980 10675350 + gene protein_coding_gene FALSE TRUE AT1G30300.1 similar to phosphonate metabolism protein-related [Arabidopsis thaliana] (TAIR:AT4G03610.1); similar to Os03g0643200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050752.1); similar to Os12g0615500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067275.1); similar to hypothetical protein LOC_Os12g42100 [Oryza sativa (japonica cultivar-group)] (GB:ABA99850.1); contains domain no description (G3D.3.60.15.10); contains domain Metallo-hydrolase/oxidoreductase (SSF56281) 0.101109310835428 0.834543448177027 0.421919130062090 1 -0.269042971483919 7.8929797730544 0.101109310835428 0.148553954651217
AT1G72640_at 6.17525940745119 5.10400409462538 5.17588460082493 4.21337758528408 6.17551262378628 4.67176926232584 6.99821189899659 5.2956798830454 5.07012535173538 5.57045435965385 5.60728494433766 6.40903523971652 5.11959907952296 5.63464490111281 6.80970760920876 6.4224269791364 4.73119533647647 5.32902271234285 5.60051327951764 0.309704227399531 0.308781963649033 0.308781963649033 0.308781963649033 0.315122407717646 0.321656542410067 0.320072727340249 0.312552898792541 0.314830522823892 0.312419272923575 0.317673130028711 0.314370164294575 0.315867648394417 0.313145706016599 0.313207398086092 0.308781963649033 0.344777960451378 0.314592850166851 0.318649604734453 1 1|0 -|/ 27351466 27351753 27351620.833 27349923 27351918 - gene protein_coding_gene FALSE TRUE AT1G72640.1|AT1G72640.2 similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT4G31530.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR06314.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) -0.244992933189088 -0.834426846662293 0.421982028157115 1 -0.269135165619632 11.0619935514762 -0.244992933189088 0.465445214790555
AT1G71420_at 2.30742402968590 2.38196485324145 2.5065172503072 2.07835736042701 2.17348975054223 2.39088841311092 2.33518844259224 2.38871247848468 2.46478202337323 2.19651248909547 2.62876874456681 2.32167185701373 2.70583421502537 2.71947945054300 2.82350235154761 2.23422503277013 2.82938434154394 2.02670507537743 2.26918368014141 0.190191967312708 0.185982721400855 0.183354232262836 0.183354232262836 0.187392680965961 0.183354232262836 0.185800786734013 0.183354232262836 0.186502318663684 0.189306175225046 0.188226459583879 0.184601656137031 0.183354232262836 0.186702904859483 0.192105651633299 0.187192878546839 0.189780091209211 0.18809894316704 0.187844820109458 1 1 - 26921490 26922044 26921790.818 26921484 26923761 - gene protein_coding_gene FALSE TRUE AT1G71420.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G09950.1); similar to PPR1106-17 [Physcomitrella patens] (GB:BAD67156.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0800138643037853 0.834323642347349 0.422037704670132 1 -0.269216757542370 4.74349571284156 0.0800138643037853 0.0846030653150426
AT4G17585_at 1.24827892375277 1.0185804235558 1.28558986432911 1.44783129261517 1.00942361824887 1.26930869290761 1.40580519561100 1.71848492692853 1.77247755859948 0.906231167010813 1.80415643286613 1.18902108149292 0.803105207157489 1.39860831098875 1.97246267507826 1.50757616660967 1.67453242058495 1.71707614247493 1.08042444688032 0.203714489213913 0.201771489294204 0.205253569250588 0.207898852644791 0.203580080620081 0.206921686461655 0.201286084722043 0.204468829346286 0.201700086613529 0.204981715743394 0.201286084722043 0.205953623503525 0.209203390057866 0.201286084722043 0.206477679981472 0.208205591272720 0.207065613449235 0.210722764894344 0.202391714568198 4 4|0 -|/ 9792537 9793185 9792671.111 9792536 9793272 - gene protein_coding_gene FALSE TRUE AT4G17585.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17970.1); similar to Protein of unknown function UPF0005; Rho GTPase activation protein [Medicago truncatula] (GB:ABD32785.1); similar to Os10g0572100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065461.1); similar to Protein of unknown function UPF0005; Rho GTPase activation protein [Medicago truncatula] (GB:ABD32183.1); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.0802619566947968 0.834224602521664 0.422091139156903 1 -0.269295048815849 2.68109371498703 0.0802619566947968 0.085551432921964
AT1G20890_at 5.15450043956725 5.54531253979547 5.26930247636096 5.26474034919686 5.88639517807907 4.75539617936108 4.34785872362729 4.29685408709541 4.60265183876011 4.57323427096291 4.57474724822115 4.23497619761566 4.43307644267196 4.75175005120305 4.62163379863512 4.67996473694805 4.25165416988143 4.24730183906918 4.87233122758388 0.225138155187235 0.223316612594317 0.226839335302912 0.226435141463365 0.228279495482712 0.236011538878530 0.213472311096665 0.218588890924021 0.226188894421932 0.225973747622547 0.228268109446488 0.213303873596065 0.221106950171234 0.224144537330005 0.213666787613137 0.220074621963959 0.222585027120156 0.213303873596065 0.223222347052518 1 1|0 -|/ 7266141 7267006 7266533.4 7265812 7267312 - gene protein_coding_gene FALSE TRUE AT1G20890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76480.1); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE92861.1) 0.124738023161603 0.834207598788517 0.422100313556022 1 -0.269308489503101 9.6436085831186 0.124738023161603 0.207269725799586
AT3G24840_at 1.96061504499407 1.57516305317499 1.57209842671686 1.96566567513669 2.20861142189498 1.51173389565949 2.21066502230208 1.99200365199507 2.09882454490471 1.96514292813196 2.9012379647131 2.57937112673881 2.50543031088441 2.08917929692461 2.12336512084741 2.02286415028867 2.12760472508959 2.48623236827551 2.01046070278222 0.241463942856680 0.242520355664571 0.246913964430795 0.244477709394283 0.249055894318678 0.247347535548386 0.241938426376756 0.241002788454491 0.247029738107109 0.245868347700069 0.245820306427154 0.241002788454491 0.254268684764514 0.249539118709744 0.243041394580428 0.241002788454491 0.255779926515429 0.247953180472456 0.242533809864339 3 3|0 +|/ 9069297 9069859 9069700.286 9067269 9070633 + gene protein_coding_gene FALSE TRUE AT3G24840.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to putative phosphatidylinositol/ phophatidylcholine transfer protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07999.1); similar to Os02g0721800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047963.1); similar to Os08g0341700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061591.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.104758451383043 0.833945572064764 0.422241707498814 1 -0.269515579701595 4.06417953643923 0.104758451383043 0.158316124878892
AT3G03750_at 2.73694932674673 3.11688034819005 3.29453048134746 3.35396494980187 3.21784819790082 3.04521094891453 2.95931065836288 3.12267782024343 3.24314959108388 3.02673051488202 3.09991346633485 3.27625437768977 2.63858849455683 2.76097729266058 3.26511971854059 3.17704047726493 2.73120480433068 2.67282512988985 2.85046268691500 0.212792581333742 0.206123948620313 0.208032329598555 0.20910008488001 0.203835858567492 0.224784410210114 0.213810553373528 0.203762028758043 0.212445793372067 0.205523443004008 0.208017750917823 0.206188675503333 0.209072977083514 0.208407442541896 0.215410919753439 0.205615346782591 0.231159688444858 0.218557174719154 0.210483967287151 3 3 + 940449 941492 941103.455 939959 942101 + gene protein_coding_gene FALSE TRUE AT3G03750.1|AT3G03750.2 SET domain-containing protein Identical to Histone-lysine N-methyltransferase SUVR3 (EC 2.1.1.43) (Suppressor of variegation 3-9-related protein 3) (Su(var)3-9-related protein 3) (Protein SET DOMAIN GROUP 20) (SUVR3) [Arabidopsis Thaliana] (GB:Q9SRV2;GB:Q7Y033); similar to SUVH3 (SU(VAR)3-9 HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT1G73100.1); similar to Histone-lysine N-methyltransferase SUVR3 (Suppressor of variegation 3-9-related protein 3) (Su(var)3-9-related protein 3) (Protein SET DOMAIN GROUP 20) (GB:Q9SRV2); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728)|similar to nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G23740.1); similar to Histone-lysine N-methyltransferase SUVR3 (Suppressor of variegation 3-9-related protein 3) (Su(var)3-9-related protein 3) (Protein SET DOMAIN GROUP 20) (GB:Q9SRV2); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728) 0.0782801559851385 0.833709001629378 0.422369392049857 1 -0.269702502122012 6.10234895866454 0.0782801559851385 0.0782338174454131
AT2G18620_at 1.51809953478178 1.62811366612196 1.43979963936843 1.71804853953110 1.53447023719506 1.13593840789265 1.57731724590392 1.96242538237120 2.30396464767268 1.85475230110974 2.39147793220788 2.45362425288481 2.29621263932535 2.52700160076041 1.92271609271332 2.0542220178873 1.99391503034460 2.83722801107337 1.60363913186046 0.203419928926538 0.199288386899577 0.198802897963185 0.19935037243198 0.195241830918104 0.197957460702139 0.196518287699956 0.203928227251057 0.203163804874561 0.205286149654112 0.195241830918104 0.195441987532591 0.219448437726014 0.1980596750242 0.205548078211157 0.196317093705213 0.205931743670013 0.209943502861688 0.201600623219958 2 2 + 8085861 8086349 8086035.455 8085370 8086442 + gene protein_coding_gene FALSE TRUE AT2G18620.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G36810.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.0871697928187176 0.833674547800212 0.422387990028364 1 -0.26972972142278 3.67944411032772 0.0871697928187176 0.108991670358359
AT3G50980_at 1.30487671062015 0.909859024409572 1.26983656156286 1.41649284631570 1.24492756015087 1.45025327405847 1.4538961995885 0.926094441173035 1.82519836630245 1.05319601483369 1.79159856985409 1.26237620674689 1.29502018755372 1.44661100018772 1.76704589931437 1.62796924206488 1.70892759618840 1.47745041156474 1.80401411687695 0.218806930387882 0.211389327236739 0.213882375844863 0.21391730166465 0.217098066444902 0.215242405816299 0.214252411472549 0.222971678359469 0.21803762418352 0.218804599254902 0.216049687290667 0.222872078596538 0.219852503724515 0.211389327236739 0.218368045117123 0.211389327236739 0.231544532397738 0.216961005512943 0.21375643808487 3 3 + 18953018 18953677 18953329.455 18952906 18953846 + gene protein_coding_gene FALSE TRUE AT3G50980.1 dehydrin, putative Identical to Dehydrin Xero 1 (XERO1) [Arabidopsis Thaliana] (GB:P25863;GB:Q9SD47); similar to RAB18 (RESPONSIVE TO ABA 18) [Arabidopsis thaliana] (TAIR:AT5G66400.1); similar to dehydrin [Nicotiana tabacum] (GB:BAD13498.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.0915090115437411 0.833564588340926 0.422447349178236 1 -0.269816585320088 2.80099343816259 0.0915090115437411 0.122157518779440
AT2G25800_at 6.37711720032785 7.14069565861294 5.79623897549127 5.89437744334269 6.91321929886274 7.00216590042835 6.49445575658132 7.0124029125717 7.65012950962071 6.99622183569612 8.18569519116876 7.9072188045339 7.93497889127617 8.28894451386338 8.02699146669672 7.71054476918944 7.31857924525383 7.51430788614648 7.23736843774584 0.215635672535935 0.180233037268078 0.180521719342299 0.181479500901948 0.178709108812065 0.174829074181784 0.186441030836044 0.179462976440309 0.178992445527665 0.185499428527837 0.174829074181784 0.176065300962712 0.177219204999246 0.176421213062841 0.180232309092733 0.174829074181784 0.188779843970777 0.176556228394667 0.184872511787403 2 2 - 11013250 11013791 11013544.273 11013002 11016817 - gene protein_coding_gene FALSE TRUE AT2G25800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20010.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33420.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28473.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05347.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE78559.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528) 0.105833428751503 0.833268852786302 0.422607023096483 1 -0.27005015594544 14.1565745717958 0.105833428751503 0.161309224543100
AT2G11370_at 1.32715226711763 1.21260260984869 1.44793888075075 1.65701721884136 1.13002706997795 1.40211783106189 1.36414884210521 1.38531179608910 1.94874468831470 1.26288413407635 1.49960410005413 1.61252891997842 1.54112095490004 1.58433011275771 1.77376744673144 1.87550857405281 1.70468576236930 2.16317172271949 1.76003777888383 0.213606883985004 0.210072700472228 0.216503063994318 0.210072700472228 0.210650703769144 0.213547905078056 0.210072700472228 0.210072700472228 0.216638834935819 0.213504043454596 0.211644008211790 0.211535032640392 0.214233383797406 0.210250940781611 0.215708522822682 0.210843665960987 0.214915499655318 0.217113704357140 0.210940791237355 2 2 + 4538787 4539238 4539041.091 4538787 4539393 + gene protein_coding_gene FALSE TRUE AT2G11370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30590.1) 0.0745444350691434 0.832819393529356 0.422849773054366 1 -0.270404998657552 3.05407051428426 0.0745444350691434 0.0627109196400936
AT2G32950_at 8.55007595522593 8.5901703131183 8.73244125910319 8.72743748196637 8.88343679421494 8.76792565821209 9.30219313207932 8.94485230025655 7.23322855856744 8.25360858017343 7.91381260675488 8.02500827833752 8.19689899784585 8.2661181027998 7.7627872002522 8.28438974104415 8.52052397297863 7.6423890345318 8.08495870330694 0.163881512382289 0.154575785605030 0.161560051595224 0.156168431913873 0.154518404209238 0.165580505914487 0.16349130568339 0.156816141311788 0.186128301470251 0.163449107409200 0.157951065209996 0.149553888521353 0.156138189667102 0.151161900100387 0.154412128159599 0.149553888521353 0.162192956093157 0.158927311371994 0.155770054049013 2 2|0 +|/ 13988821 13990294 13989801.667 13985010 13990612 + gene protein_coding_gene FALSE TRUE AT2G32950.1 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. Identical to E3 ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive photomorphogenesis protein 1) (COP1) [Arabidopsis Thaliana] (GB:P43254;GB:O23974;GB:O23975;GB:O48770); similar to SPA4 (SPA1-RELATED 4), signal transducer [Arabidopsis thaliana] (TAIR:AT1G53090.2); similar to E3 ubiquitin ligase protein COP1 (Constitutive photomorphogenesis protein 1) (GB:P93471); similar to regulatory protein (GB:AAA32772.1); similar to constitutively photomorphogenic 1 protein [Pisum sativum] (GB:CAB89693.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.075106542169813 0.832630774630228 0.422951672658265 1 -0.270553861353319 16.7791947480224 0.075106542169813 0.0653651743614502
AT2G17770_at 1.07671401109536 1.26080221965384 1.04475805040344 1.09596247887849 0.866893510229478 1.54361152483682 1.17729277672614 1.15978004445973 1.20959863458053 1.01816058260446 1.38089665381923 1.35456170099028 1.2954699796579 1.21244477136182 1.34857824303211 1.05180174191532 1.07787476641660 1.26053060233119 0.875592610612684 0.205842015748523 0.215964800356684 0.198235774155025 0.200096175899514 0.196278118023949 0.197105933314350 0.198912129094018 0.199067178825772 0.196124329221473 0.200674317459089 0.196041405031624 0.197940628772414 0.198672865026130 0.197956031565011 0.198564295555013 0.196041405031624 0.202188305656764 0.204017117263718 0.203799577848487 2 2 + 7730203 7730609 7730388.091 7730185 7730655 + gene protein_coding_gene FALSE TRUE AT2G17770.1 ATBZIP27/FDP (FD PARALOG); transcription factor Encodes a paralog of bZIP transcription factor FD. This protein interacts with FD and FT. similar to FD (FD), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G35900.1); similar to basic leucine zipper transcription factor [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAG01025.2); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0912391631389781 0.832444442917703 0.423052352762028 1 -0.270700890107027 2.29433703538864 0.0912391631389781 0.121725761028073
AT3G07970_at 1.32095053029033 1.21510097729091 1.41852745138192 1.58463941445069 1.05124499354071 1.28551688523165 1.65037039136777 1.18409627044891 0.826903795357855 1.43558578564149 1.33853952729038 1.00597714763349 0.880099715002208 1.16645881551908 1.40845748671125 1.44579562248891 1.72002697304708 1.4044996861138 1.10411459023581 0.217166245977381 0.213531175406803 0.213358675418252 0.206778083746384 0.211758824479759 0.20603469124783 0.208043928680547 0.204833737419349 0.230213406786952 0.211963617719608 0.217617722792405 0.213293770612304 0.206653296905965 0.212029554772422 0.207458025515448 0.204833737419349 0.212218326747965 0.226261795508163 0.21443813645168 3 3|0 +|/ 2542121 2543349 2542929.25 2541012 2543438 + gene protein_coding_gene FALSE TRUE AT3G07970.1 polygalacturonase, putative / pectinase, putative similar to endo-polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT2G41850.1); similar to polygalacturonase precursor [Cucumis melo] (GB:AAC26512.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.0831915625579104 0.83229244017745 0.423134495859951 1 -0.270820809671161 2.54802249531911 0.0831915625579104 0.0965223440375895
AT1G06590_at 2.04780431963631 2.27743450975868 2.06455113302093 1.98842632999204 2.30430127397563 2.5895468348142 2.19701092733280 1.98737437356557 2.18531032124143 2.2534607599256 2.30695037558444 2.27841364073749 2.57755382078221 1.78523376336529 2.66200095941549 2.48142302336004 2.19715613025273 2.44092822929479 2.45003592254582 0.208763013952886 0.208763013952886 0.216336729978649 0.213395879437018 0.219898607867749 0.215208651735505 0.216415136133428 0.211948190738996 0.212051670023680 0.218228256978854 0.217356430642833 0.217160130211935 0.216473684165941 0.219395941311081 0.215560499501749 0.210584778242191 0.217916241235016 0.210076700452733 0.212037131625285 1 1|0 -|/ 2016526 2017743 2017173.4 2016307 2024661 - gene protein_coding_gene FALSE TRUE AT1G06590.1 binding similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99493.2); similar to Os12g0626300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067324.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0771194259944027 0.83208479631642 0.423246724959841 1 -0.270984595370168 4.50079445980536 0.0771194259944027 0.0741993993512891
AT2G27150_at 5.90533442804344 6.64939128391116 6.60904397914328 6.70311546211448 6.8145548797415 5.61868816978305 6.09183505103385 6.39535782663082 6.6034504327987 6.24948882857628 6.13756145951003 6.21321439332115 5.7618409226152 6.02619598702298 4.85266809616289 6.29920050797799 5.78471564975144 6.45571379531127 6.3565727280236 0.267376228327081 0.259154170287941 0.263808459676579 0.269796739886895 0.259154170287941 0.261410393919721 0.274911931738367 0.268437148093065 0.273813838414808 0.261633346599439 0.266987468694101 0.259154170287941 0.271523820221251 0.273445723945994 0.272020016406310 0.263365352100955 0.275792014876502 0.26480332848426 0.261676329726706 2 2|0 +|/ 11613161 11614017 11613704.3 11608832 11615528 + gene protein_coding_gene FALSE TRUE AT2G27150.1|AT2G27150.2 AAO3 (ABSCISIC ALDEHYDE OXIDASE 3) Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis. Identical to Abscisic-aldehyde oxidase (EC 1.2.3.14) (Aldehyde oxidase 3) (AO-3) (AtAO-3) (AtAO4) (AAO3) [Arabidopsis Thaliana] (GB:Q7G9P4;GB:O64429;GB:Q7GD73;GB:Q9SIG7;GB:Q9SLZ2); similar to AAO4 (ALDEHYDE OXIDASE 4), aldehyde oxidase [Arabidopsis thaliana] (TAIR:AT1G04580.1); similar to AAO1 (ALDEHYDE OXIDASE 1) [Arabidopsis thaliana] (TAIR:AT5G20960.2); similar to AAO2 (ALDEHYDE OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT3G43600.1); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93768.1); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93767.1); similar to aldehyde oxidase [Lycopersicon esculentum] (GB:AAG22607.1); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal; (InterPro:IPR005107); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; (InterPro:IPR000674); contains InterPro domain [2Fe-2S]-binding; (InterPro:IPR002888); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; (InterPro:IPR008274); contains InterPro domain Molybdopterin dehydrogenase, FAD-binding; (InterPro:IPR002346); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.14295541819149 -0.832082570188625 0.423247928263968 1 -0.270986351106374 12.5206948923462 -0.14295541819149 0.249864406393323
AT3G12100_at 6.89014304334955 7.27663975753725 7.10562821827582 6.80742336253727 7.45668598070205 6.17660214150969 6.23744107892448 6.4183560594586 6.78107018949394 5.99046787727486 6.32106222374122 5.8889505527963 5.99259848393297 6.8447964460285 5.70064724967781 6.53165291712976 4.95285435016538 6.15880854656204 6.7472504879095 0.242262398523689 0.244483653968583 0.25576875788899 0.24231815840412 0.245399320428980 0.263806458079739 0.245637386022029 0.24591241885042 0.262027123785858 0.242262398523689 0.248508167657083 0.242262398523689 0.243241658388703 0.249725307865581 0.247496617182056 0.250880640514693 0.268545501413545 0.255838619746315 0.242262398523689 3 3|0 -|/ 3854748 3855958 3855338.429 3854521 3857325 - gene protein_coding_gene FALSE TRUE AT3G12100.1|AT3G12100.2 cation efflux family protein / metal tolerance protein, putative|cation transporter/ efflux permease Identical to Metal tolerance protein C2 (AtMTPc2) (MTPC2) [Arabidopsis Thaliana] (GB:Q6ICY4;GB:Q9C7C2;GB:Q9LH56); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04620.1); similar to Os02g0832700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048630.1); similar to PREDICTED: similar to zinc transporter ZTL1 isoform 1 isoform 3 [Bos taurus] (GB:XP_878682.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524)|Identical to Metal tolerance protein C2 (AtMTPc2) (MTPC2) [Arabidopsis Thaliana] (GB:Q6ICY4;GB:Q9C7C2;GB:Q9LH56); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04620.1); similar to Os02g0832700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048630.1); similar to cation efflux protein [Entamoeba histolytica HM-1:IMSS] (GB:XP_655380.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.138200782183219 -0.832026602294927 0.423278181725413 1 -0.271030491368244 13.0737070541937 -0.138200782183219 0.239144434126426
AT3G23850_at 2.6003623748874 2.26483035439953 2.44019556689725 2.23875732470783 2.54716139519518 2.66156166138174 2.52849948643764 2.68052342886489 2.25957787444816 2.44238772298741 2.60409860105718 2.58986295894116 2.72429731768667 2.36271101059698 2.68576207551240 2.54814349180758 2.63014259522308 2.60109607653643 2.47362228449454 0.181654632566218 0.185088123115177 0.183593619153718 0.188847815955355 0.191615297903307 0.188141926037583 0.183191133151319 0.18612264408777 0.187283191074055 0.184325853446423 0.180843448956076 0.183627326447975 0.185566201804960 0.181276071655767 0.185280821257307 0.181299948471407 0.18878687855188 0.187788944766083 0.189692070048101 3 3|0 +|/ 8615571 8616500 8615960.571 8615571 8616540 + gene protein_coding_gene FALSE TRUE AT3G23850.1 contains domain SUBFAMILY NOT NAMED (PTHR14085:SF3); contains domain FAMILY NOT NAMED (PTHR14085) 0.0773833572541424 0.831994540757916 0.423295513250275 1 -0.271055776211502 4.98779989571154 0.0773833572541424 0.0753051902552673
AT2G30925_at -0.348119985294096 -0.267155379629230 -0.424900782264083 -0.209934845025902 -0.237527360037809 0.186393487950297 -0.303959337749131 0.133545045927641 -0.380501203196444 -0.0969315690146902 0.251112007744608 0.0366627023567127 0.0495367859434195 -0.323839964495340 -0.0587717176038 -0.308850721186684 -0.178463797566903 -0.029441080889492 -0.187551910798453 0.159076318931885 0.160097841640679 0.156590918013532 0.160772051408099 0.157949343047880 0.157515102772958 0.158296116656654 0.157450948571795 0.16745748364482 0.158971570991206 0.161482179290462 0.157115554138213 0.157327016164415 0.157926733018742 0.157221311257872 0.162575707945203 0.161419762986842 0.171820538895043 0.160710689139654 2 2 + 13168894 13168996 13168953.364 13168892 13169020 + gene protein_coding_gene FALSE TRUE AT2G30925.1 unknown protein 0.08816731356642 0.831889552673243 0.423352270045762 1 -0.271138567525768 -0.329916661622979 0.08816731356642 0.112669696265774
AT3G07590_at 4.49795861923185 4.87259766413821 4.6897741040807 4.63499868711855 4.69705477845078 3.99005417303634 4.35015679761638 4.11880323532060 3.43475119140139 3.71448287272486 3.23484235088985 3.69549440354808 3.47264400254075 3.45258931905221 3.13835527297977 3.46508666185347 3.52763630737502 3.30107754593276 3.80828392344364 0.255094680312649 0.248380315031109 0.253966114021991 0.255009929503990 0.256076950695844 0.272804107947050 0.254486613315089 0.252534073614801 0.246733839005144 0.246733839005144 0.246733839005144 0.246733839005144 0.250303817274091 0.246733839005144 0.251166777931264 0.246733839005144 0.25082747116447 0.252820624080806 0.253867454092255 3 3|0 +|/ 2423326 2423753 2423587.222 2423091 2424172 + gene protein_coding_gene FALSE TRUE AT3G07590.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative similar to small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative [Arabidopsis thaliana] (TAIR:AT4G02840.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE77444.1); similar to OSJNBa0089K21.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE03048.2); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.0992244531201572 -0.831605851143932 0.423505665189143 1 -0.271362242831346 8.01316062181324 -0.0992244531201572 0.144449245896835
AT3G57630_at 5.09948978671731 5.3263689334607 6.1837811979989 5.95498635819774 4.22095140479808 3.57461809239582 5.25024245253164 4.66404164121255 4.31855246821476 4.10110826364393 4.53188647312599 5.52547826344647 4.28828464589424 4.51383449372982 4.05531748790955 4.51303395156225 3.74441879498149 4.43471149871343 3.99570897378436 0.225670624090313 0.217873735273638 0.240785451245395 0.224131206541483 0.218263292130061 0.223395723579863 0.223148982348775 0.21883101939657 0.23600204560668 0.221852012744476 0.222897726060684 0.222447574666991 0.216806344945155 0.222778379455527 0.222944533865368 0.214562246908298 0.225027639706068 0.230482699208628 0.216135581836319 3 3 - 21350531 21351464 21350909.273 21350279 21354773 - gene protein_coding_gene FALSE TRUE AT3G57630.1|AT3G57630.2 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to Os03g0174300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049126.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN62780.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF, extracellular; (InterPro:IPR013111); contains InterPro domain Exostosin-like; (InterPro:IPR004263)|similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to Os03g0174300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049126.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN62780.1); contains InterPro domain EGF, extracellular; (InterPro:IPR013111); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.105481346244902 0.831537233392358 0.423542771838281 1 -0.271416332297418 9.32897361827313 0.105481346244902 0.160968688162278
AT1G62680_at 2.81193670514891 3.02590289167441 3.05478725176419 3.20208314190520 2.95483915379418 3.0058135365347 3.05777979688439 3.33412828300062 3.18425142887953 3.14186859128243 3.20525239206016 3.06687021400928 3.00563126316583 2.94359658735179 3.19936474210077 3.13996917685599 2.84267715105006 3.19997272249211 3.34211340139853 0.183185474716059 0.174360637046704 0.187524573845196 0.183055680193668 0.175837555942780 0.191591637709980 0.177193081902841 0.177536275029061 0.187084099065823 0.174535696733721 0.174360637046704 0.180242046541486 0.176341177009144 0.178825988176842 0.182983005239314 0.175862622205024 0.179503492246286 0.177655849112658 0.187272398785980 1 1 - 23211913 23212416 23212168.182 23210755 23213578 - gene protein_coding_gene FALSE TRUE AT1G62680.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to pentatricopeptide repeat-containing protein [Raphanus sativus] (GB:AAP86199.1); similar to fertility restorer homologue A [Raphanus sativus] (GB:CAD80166.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0751919204476315 -0.83145570584394 0.423586862586762 1 -0.271480593142102 6.20498947258295 -0.0751919204476315 0.0662246716438886
AT1G13580_at 1.91781123300640 3.25455786413666 2.65380863999259 3.02195648419807 3.88216904120808 2.9054276964257 3.77323112159413 4.09216163642506 3.38105810177580 3.45845051011981 3.69593447028769 3.65162365163922 3.47487379853024 3.11718345525842 2.55665942878686 3.48596433107925 2.74625058704039 3.62213136271274 3.60075279751119 0.260829865421516 0.254481319254404 0.258900005338809 0.254481319254404 0.254481319254404 0.260702941608331 0.260873653766677 0.255886882589059 0.269011196336893 0.257009910969796 0.254481319254404 0.259624407057923 0.254999152212275 0.261188319719601 0.259022757233297 0.254481319254404 0.271630845179846 0.254481319254404 0.25820475585089 1 1|0 -|/ 4645211 4645774 4645583.2 4644610 4646850 - gene protein_coding_gene FALSE TRUE AT1G13580.1|AT1G13580.2 longevity-assurance (LAG1) family protein|LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) Identical to LAG1 longevity assurance homolog 3 (LAG1 homolog 3) [Arabidopsis Thaliana] (GB:Q6NQI8;GB:Q9FZ69;GB:Q9LMZ0); similar to LAG1 (Longevity assurance gene 1) [Arabidopsis thaliana] (TAIR:AT3G25540.1); similar to ASC1-like protein (Alternaria stem canker resistance-like protein) (GB:Q8W4Y5); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Longevity-assurance protein (LAG1); (InterPro:IPR005547) -0.164929749568265 -0.831399298433679 0.42361736996018 1 -0.271525050824463 6.57459785069123 -0.164929749568265 0.298646662164652
AT1G67550_at 6.45668977107872 5.67864014501212 5.80433823671443 5.14391408037267 5.46575980842593 4.6507092306315 5.07837971986993 4.66268698732512 5.05064553038998 4.84208581663832 4.7014139119107 4.90531567212189 4.55526550303469 4.96820535242880 4.56056452962305 5.05341546996421 4.8671120538223 4.69763852340334 4.68730286941442 0.238680270457892 0.237460848254141 0.233239987933403 0.227414664919558 0.239104679126357 0.237209377896027 0.227414664919558 0.231417385202789 0.245459854171172 0.227544332587517 0.233288711867372 0.227414664919558 0.230263284111693 0.234783151120223 0.237120435646787 0.227414664919558 0.235110462237671 0.233899716817130 0.236332496176213 1 1|0 +|/ 25319718 25320506 25320204.1 25316403 25321058 + gene protein_coding_gene FALSE TRUE AT1G67550.1 URE (UREASE); urease Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation. similar to embryo-specific urease [Glycine max] (GB:AAO85884.1); similar to urease [Solanum tuberosum] (GB:CAC43857.1); similar to urease [Glycine max] (GB:CAC43845.1); contains InterPro domain Urease alpha-subunit, N-terminal; (InterPro:IPR011612); contains InterPro domain Metallo-dependent hydrolase, composite; (InterPro:IPR011059); contains InterPro domain Urease, gamma/beta/alpha type; (InterPro:IPR008221); contains InterPro domain Urease, alpha subunit; (InterPro:IPR005848); contains InterPro domain Urease, beta subunit; (InterPro:IPR002019); contains InterPro domain Urease, gamma subunit region; (InterPro:IPR002026); contains InterPro domain Amidohydrolase 1; (InterPro:IPR006680) -0.137156922613815 -0.830900813463921 0.423887034327057 1 -0.271917819111189 10.1919536386886 -0.137156922613815 0.237194076875716
AT1G23720_at 2.25535522876526 2.72933103047505 2.44286605151613 2.71435563641440 2.20042134539318 2.93936276076096 2.65700369139504 2.40153200923214 3.10642014839778 3.20618341394227 3.10134254578292 2.75739221972777 2.94807404256218 2.74641335447465 3.00138619267271 2.76657707605170 2.92034338687418 3.17693741342482 3.30159877498586 0.228428843135412 0.238974044499029 0.240594288173911 0.240486742263283 0.242539180993972 0.231959107422411 0.228050121942359 0.240469634232395 0.231348895846351 0.228050121942359 0.235901200417246 0.242190930561577 0.232105172364795 0.228327965784834 0.233146669591498 0.228939605714214 0.235720588777497 0.234617639907347 0.232623191721136 1 1 + 8390746 8391287 8391003.222 8388644 8391529 + gene protein_coding_gene FALSE TRUE AT1G23720.1 proline-rich extensin-like family protein similar to ATHRGP1 (ATHRGP1), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT3G54590.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G54580.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G28550.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.106989937470655 -0.830887315191187 0.423894338054441 1 -0.271928451869885 5.60854966493819 -0.106989937470655 0.165052771604067
AT3G32050_at 3.25309211652128 3.3899333541724 3.25451067621711 3.32588754941239 2.56879894103997 3.13303850515598 2.34488303558145 3.05224628536557 3.87570311942156 3.65826387802749 3.68541564016828 3.62662811801254 2.77428108098397 3.17816497643421 3.5007038654216 3.58148308827657 3.21472719593274 3.65113361431632 3.47958796414902 0.247723703236306 0.244275052639740 0.247035005380838 0.256158010780314 0.252829207790611 0.255392810036511 0.268065270967389 0.242839738554668 0.247475008087258 0.245802261924180 0.242652676161008 0.238641617449435 0.250406705639796 0.238629725195314 0.242735233983719 0.240431919376369 0.246384660502591 0.238731601026291 0.264936027272546 3 3|0 -|/ 13071421 13072235 13071670.167 13071339 13072295 - gene protein_coding_gene FALSE TRUE AT3G32050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01700.1) -0.104548784854947 -0.830646823523678 0.424024478844391 1 -0.272117864936900 6.57667490025459 -0.104548784854947 0.158847707832291
AT4G31950_at 1.58485277662279 1.51403384094513 1.47110679241783 1.43969860342385 1.31479040145488 1.53483553896 1.45271895970714 1.38804981523034 1.91678974599757 1.85408248558654 1.41133170421878 1.67486762067279 1.98710536528000 1.90136622458091 1.61319527001007 1.66984371899470 1.83255204706788 1.65752057346671 1.67332794714918 0.204635242316757 0.205426472431292 0.204469202283427 0.205936564466762 0.202744777624662 0.20269421726843 0.214006707898010 0.210572551275430 0.202458135798888 0.207448594145982 0.210214953582725 0.208118753191743 0.208076143188989 0.210064819656267 0.202426870200009 0.204337951141625 0.207686907646121 0.208124089665828 0.206686779592317 4 4 + 15456597 15457064 15456858.364 15455169 15457127 + gene protein_coding_gene FALSE TRUE AT4G31950.1 CYP82C3 (cytochrome P450, family 82, subfamily C, polypeptide 3); oxygen binding member of CYP82C similar to CYP82C4 (cytochrome P450, family 82, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31940.1); similar to CYP82C2 (cytochrome P450, family 82, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31970.1); similar to cytochrome P450 [Ammi majus] (GB:AAS90126.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0705332957184108 -0.830593003338834 0.424053607007706 1 -0.272160247579630 3.22911394531903 -0.0705332957184108 0.0418934413029477
AT2G44650_at 9.19644195685538 9.54521549680163 8.59708622434794 8.66579006890937 9.41648576890746 8.88323136635248 8.87676956919822 9.23524822652402 9.21980485573761 9.28328291865147 9.49148230886044 9.79359944548115 9.10404707247044 9.41673789530227 9.72313395500118 9.48366488223356 8.52752233634113 9.05657614584156 9.05947585052182 0.143948275698779 0.142534521955955 0.148397953773117 0.149516670018303 0.151960560501487 0.147211246662923 0.146606823856090 0.148915450827144 0.145914666512449 0.142791304947538 0.143236057399208 0.147376049668048 0.137876975720279 0.145471904582204 0.14887212804266 0.145329845172502 0.160870509796963 0.151263409879350 0.137876975720279 2 2|0 -|/ 18426604 18427541 18427047.714 18426478 18428186 - gene protein_coding_gene FALSE TRUE AT2G44650.1 CHL-CPN10 (chloroplast chaperonin 10) Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. similar to chloroplast chaperonin 10, putative [Arabidopsis thaliana] (TAIR:AT3G60210.1); similar to chloroplast chaperonin 10 [Brassica rapa] (GB:ABK78693.1); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains InterPro domain GroES-like; (InterPro:IPR011032) -0.0928480791638329 -0.830373809249571 0.424172251426526 1 -0.272332835132369 18.3080919414846 -0.0928480791638329 0.127078036118816
AT3G60580_at 2.45898775704934 2.89027836314826 2.28714755334428 2.14561448252544 2.06885544522648 2.16391961722987 1.91657082636050 2.01610662804103 2.19390834019031 2.00099505070586 1.82451170172276 1.89649208756096 2.06583516222471 1.91655807783994 2.25445737401224 2.14439428392391 2.25412718190421 2.37909852176726 2.09236466909446 0.192456715674653 0.202611051315864 0.201815361496056 0.198150473376947 0.201244953752754 0.208810105003852 0.198522935505994 0.196872400816272 0.194387032806553 0.196983131787088 0.210060200660347 0.196583479993704 0.196876013788351 0.197137371422875 0.201147518261068 0.201488020046212 0.206004114902415 0.200097047603398 0.196294920266873 3 3 + 22405288 22405797 22405517.273 22404914 22406019 + gene protein_coding_gene FALSE TRUE AT3G60580.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT2G45120.1); similar to ZPT3-3 [Petunia x hybrida] (GB:BAA21927.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0789616700978196 -0.830347239519581 0.424186634480873 1 -0.272353752727645 4.33728024354884 -0.0789616700978196 0.0820848035679
AT4G25950_at 1.6895115018586 1.2556203442455 1.84178260820772 1.66807198062981 1.48731595106538 1.53534352326298 1.62237243030321 1.61286689742525 2.2029002153175 1.83206518451640 1.97993827338412 1.59996144952882 1.71537877924544 1.70799080297735 1.42606571350583 1.43045483690051 1.56791042996718 1.92601165342684 1.70923036578344 0.180183029059123 0.179722261156186 0.181470980664174 0.178749857853715 0.179499877112627 0.179363963691221 0.182938136297958 0.178749857853715 0.182395946872403 0.187967253342636 0.183428751717199 0.186204381196163 0.187098946430223 0.182707441943726 0.179284938504638 0.181468061932458 0.185836217925783 0.183439788962913 0.188265927822621 4 4|0 -|/ 13173827 13174307 13174090.667 13173762 13174344 - gene protein_coding_gene FALSE TRUE AT4G25950.1 VATG3 (VACUOLAR ATP SYNTHASE G3, VACUOLAR ATP SYNTHASE SUBUNIT G 3) V-ATPase G-subunit like protein Identical to Vacuolar ATP synthase subunit G 3 (EC 3.6.3.14) (V-ATPase G subunit 3) (Vacuolar proton pump G subunit 3) [Arabidopsis Thaliana] (GB:Q9SZH0); similar to VMA10 (VACUOLAR MEMBRANE ATPASE 10) [Arabidopsis thaliana] (TAIR:AT3G01390.2); similar to Vacuolar ATP synthase subunit G (V-ATPase G subunit) (Vacuolar proton pump G subunit) (GB:Q9SP55); contains InterPro domain Vacuolar (H+)-ATPase G subunit; (InterPro:IPR005124) -0.078741103586053 -0.83012942943598 0.424304554409011 1 -0.272525206436333 3.38108361174453 -0.078741103586053 0.0813235260075048
AT2G32900_at 5.94927690091561 5.55200151214961 5.08939462642964 5.13382444467623 5.7691637863403 5.00635257624319 5.34933662930744 5.36918329095853 4.64179636398186 4.69600827383353 5.01519841044819 5.3104371939455 4.51625142248835 5.49250559514368 4.64381267709735 5.06824438151189 4.80343826130114 4.79158050259317 5.21654438529543 0.206769150748894 0.206857624140160 0.212273154105730 0.206199285338572 0.20609807479717 0.218987616605502 0.211035082371446 0.218219100031761 0.219816912470166 0.207442852697175 0.209174191570321 0.203834470129558 0.204401077560062 0.217789062313338 0.215749237532316 0.203834470129558 0.219394172062946 0.205542982573557 0.208681864508360 2 2|0 +|/ 13963190 13964253 13963792.9 13960808 13964825 + gene protein_coding_gene FALSE TRUE AT2G32900.1 ATZW10 homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome segregation Identical to Centromere/kinetochore protein zw10 homolog (ZW10) [Arabidopsis Thaliana] (GB:O48626;GB:O48775); similar to Centromere/kinetochore protein zw10, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94216.2); similar to Os11g0545700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068060.1); contains InterPro domain Centromerekinetochore Zw10; (InterPro:IPR009361) -0.100765921857286 -0.83009574727116 0.424322791508839 1 -0.272551716547833 10.3056333358458 -0.100765921857286 0.149075978760070
AT1G60090_at 2.58695179656515 2.57118416934889 2.39764514495203 2.64856686124318 2.19969961034595 2.87256924649267 2.32995335032676 2.8972271205454 3.04618915048887 2.94747146270623 2.60429461493031 2.88812497640442 3.01481329483682 3.04040175751124 2.69818273674388 3.25712549951026 3.06091230485622 2.72318922235824 3.16460761157828 0.271318083690385 0.233805183863803 0.254045440504224 0.244176517753857 0.233805183863803 0.24196057766326 0.239951791050095 0.233805183863803 0.233805183863803 0.235387505729346 0.254213017494240 0.239507436927926 0.239428985742370 0.246638689604826 0.241073456570761 0.245923552627872 0.233805183863803 0.233805183863803 0.235331498056472 1 1 + 22160845 22161705 22161311.625 22159247 22161730 + gene protein_coding_gene FALSE TRUE AT1G60090.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G45191.2); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G22100.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.104292208734314 -0.829989677256515 0.424380226197968 1 -0.272635194601662 5.5447929753867 -0.104292208734314 0.158395923531607
AT3G03990_at 10.7928844061206 10.9051465514325 10.5304225678900 10.6027488486209 10.6435493306075 10.4781782749796 10.1685634038241 10.3775863899995 9.5007205458608 9.3107351963691 8.99352834447291 8.92644458634163 9.19426905726198 9.24684533086525 8.58747810619734 9.8831017497049 9.27554932061276 8.97062774629936 9.0330253944087 0.146804460185432 0.142418790305951 0.147923474553890 0.147471902387509 0.137515357946561 0.142927282212812 0.147520468002043 0.137515357946561 0.14941643118332 0.152928950618954 0.141726645446554 0.142466297282318 0.143039242045527 0.142887045044809 0.145228084933073 0.137515357946561 0.142270913494870 0.144864410684997 0.142856919396956 3 3 + 1034002 1034534 1034261.364 1033775 1034913 + gene protein_coding_gene FALSE TRUE AT3G03990.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G37470.1); similar to hydrolase [Platanus x acerifolia] (GB:CAJ91149.1); similar to Os03g0203200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049306.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.0720418071565261 -0.829410265035503 0.424694057419065 1 -0.273091033056072 19.7704970929005 -0.0720418071565261 0.0515900522814738
AT4G26820_at 2.46707928863698 2.39567815289593 2.01336639110236 2.59926397112768 1.89331241248467 2.49661953652488 1.73039637397316 1.87367457054769 2.50967396331722 2.47739159961304 2.50224213432871 2.18634746346835 2.23417047901806 2.64740830307368 2.35216054482342 2.45775901477538 2.39209533527111 2.40864649446035 2.00559843978939 0.21752509003474 0.211574450077287 0.218756648168376 0.214710910608505 0.223346122305799 0.21441917663072 0.228476462873617 0.220803143396415 0.221862525745166 0.218708963639396 0.215193973239563 0.214860196423750 0.221489579488915 0.217370589502705 0.212631120210224 0.211574450077287 0.212449629680911 0.213600181007896 0.212267927752256 4 4 - 13493470 13494032 13493802.909 13493459 13494187 - gene protein_coding_gene FALSE TRUE AT4G26820.1 contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.100324600771147 0.829313451591567 0.424746510289372 1 -0.273167171612081 4.54791969819114 0.100324600771147 0.148149572293383
AT1G01710_at 8.19126482729949 8.15355318077008 7.92625488038825 7.79165636037205 8.10233341640355 7.73905491854688 7.87513142257545 7.7262813110658 7.32901934326194 7.98010322289462 7.6765091134125 7.54042258227544 7.6314423531679 7.62066860387328 7.54746815474642 7.80353775506098 7.5718813969242 7.33564410684059 7.63158147643725 0.183508421056997 0.188277402998521 0.206675765937286 0.193608736960035 0.200759118713111 0.203620230663108 0.194319297369868 0.189018168500715 0.20843950396583 0.184944718057611 0.192534659797398 0.183501454298472 0.189839539244546 0.194519410420113 0.186472497570585 0.194891722574839 0.209685504138946 0.203632203818251 0.191276250625428 1 0|1 /|+ 264681 265986 265456.625 262828 267771 + gene protein_coding_gene FALSE TRUE AT1G01710.1 acyl-CoA thioesterase family protein similar to acyl-CoA thioesterase [Arabidopsis thaliana] (TAIR:AT4G00520.2); similar to hypothetical protein PaerP_01005464 [Pseudomonas aeru (GB:ZP_01292630.1); similar to Os04g0558400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053533.1); similar to OSJNBa0065O17.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03486.2); contains InterPro domain Acyl-CoA thioesterase; (InterPro:IPR003703); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595) -0.0763436903718122 -0.829136720327395 0.424842273249516 1 -0.273306141239263 15.5571153425872 -0.0763436903718122 0.0721176222870077
AT2G21590_at 2.16515721013030 1.95052050254961 1.7218367270673 1.83467472989307 2.39697381349989 1.90528627897815 2.3152442387217 2.2832485846876 2.12679716774896 2.01748490052248 2.60635698737864 3.22632701208476 2.40903856270956 2.49466181598602 2.35036626843686 2.44433816544515 2.03516597237466 2.42753682417855 2.21751851163690 0.175183562641697 0.18410824255168 0.180726992536585 0.176332524351120 0.175183562641697 0.186931066903717 0.175433332614613 0.178807321592111 0.180657786748996 0.175183562641697 0.187706580112895 0.18489043147151 0.177465617521486 0.185369111365875 0.177773262545953 0.178856550194446 0.179327084861973 0.182172196630084 0.175183562641697 2 2|0 +|/ 9248109 9249198 9248586.889 9245562 9249520 + gene protein_coding_gene FALSE TRUE AT2G21590.1|AT2G21590.2 APL4 (large subunit of AGP 4); glucose-1-phosphate adenylyltransferase Encodes the large subunit of ADP-glucose pyrophosphorylase, the enzyme which catalyzes the first and limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described. Identical to Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP- glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) [Arabidopsis Thaliana] (GB:Q9SIK1); similar to APL2 (large subunit of AGP 2) [Arabidopsis thaliana] (TAIR:AT1G27680.1); similar to APL3 (large subunit of AGP 3) [Arabidopsis thaliana] (TAIR:AT4G39210.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum habrochaites] (GB:ABC26923.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] (GB:ABC26921.1); similar to ADP-glucose pyrophosphorylase large subunit [Lycopersicon hirsutum] (GB:AAD56405.1); contains InterPro domain Glucose-1-phosphate adenylyltransferase; (InterPro:IPR011831); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain ADP-glucose pyrophosphorylase; (InterPro:IPR005836); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) 0.0823870055543982 0.828596388501403 0.425135144879525 1 -0.273730861781313 4.38152983287948 0.0823870055543982 0.0950354836822077
AT4G04955_at 7.23851428313781 7.3873656577068 7.31724463875667 7.21447764809938 8.0022674679447 7.5303911701032 7.37088816325216 6.65326628542361 7.59846670057022 7.11531999824658 7.0749438051756 7.0507340417701 6.59306745210535 6.73796709778613 6.16882252088784 7.89888075546746 6.70450916024669 6.94293072207889 7.64566139526210 0.203231330267409 0.206330879668653 0.20351347041421 0.208009754440756 0.200889569720757 0.226005589001543 0.200484072620881 0.206089823721835 0.207617334368761 0.20962780830231 0.205536805079371 0.201091891490341 0.206881815870771 0.223271261064874 0.224967068377882 0.205197384876379 0.235647160633566 0.214276268786895 0.208522273626847 4 4|0 -|/ 2522314 2523234 2522882.778 2522032 2525278 - gene protein_coding_gene FALSE TRUE AT4G04955.1 ATALN (ARABIDOPSIS ALLANTOINASE); allantoinase/ hydrolase Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied. similar to dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) [Arabidopsis thaliana] (TAIR:AT5G12200.1); similar to Os04g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054286.1); similar to allantoinase [Robinia pseudoacacia] (GB:AAR29343.1); contains InterPro domain Metallo-dependent hydrolase, composite; (InterPro:IPR011059); contains InterPro domain Amidohydrolase 1; (InterPro:IPR006680) -0.101540393203660 -0.827773844072056 0.425581240504589 1 -0.274376948076637 14.5141175688694 -0.101540393203660 0.151890955437182
AT3G63470_at 1.46568247684667 0.711989152460886 1.11460887882142 1.00267761843002 0.831831593766101 0.976437919142965 0.776738853047998 0.99896130324385 1.89972854952193 1.24756826101415 1.69592033437078 0.795965815948089 1.46071689983044 1.45585749123632 1.73987307553459 1.56301777697876 1.97079224587635 2.06756926839440 1.03109688310914 0.191651118984112 0.188297051234507 0.188962065260987 0.194896920680733 0.190889903306005 0.188988593244934 0.190297976871426 0.188817171842413 0.197556166982017 0.189043345341168 0.188297051234507 0.194297014453742 0.1921989621942 0.190355922029992 0.189437896934223 0.190240421653249 0.193344054823132 0.189010702381455 0.198913773434262 3 3 + 23451278 23451788 23451549.182 23449449 23452035 + gene protein_coding_gene FALSE TRUE AT3G63470.1 SCPL40 (serine carboxypeptidase-like 40); serine carboxypeptidase similar to SCPL39 (serine carboxypeptidase-like 39), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G52020.1); similar to putative serine carboxypeptidase [Pisum sativum] (GB:CAC19488.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0969811358898772 0.827609746744178 0.425670273772917 1 -0.274505775087467 2.47812198017147 0.0969811358898772 0.139615118937009
AT1G75350_at 11.5082982729136 11.6847143149765 11.2885916845930 11.3019208615979 11.839441906032 11.3638875128652 11.9190659204991 11.9825580500854 11.6880971257890 12.0401471058693 12.2262375663672 12.2231943343688 11.9407548956527 11.9189293014200 12.4407899222691 12.1364661656288 11.7179561972215 11.9462534157700 11.9851676765247 0.0778854432454668 0.0750614467734803 0.0772183788427818 0.0752221152260296 0.0760594100586958 0.0766387451600551 0.075784112759388 0.075273920423659 0.0816969857838356 0.0750614467734803 0.0758941968105522 0.076454333079413 0.0774610810768473 0.0765112992387907 0.0750614467734803 0.0751719321538488 0.0821264331875676 0.0775199596489739 0.0750614467734803 1 1|0 +|/ 28275837 28276249 28276059.7 28275732 28276493 + gene protein_coding_gene FALSE TRUE AT1G75350.1 EMB2184 (EMBRYO DEFECTIVE 2184); structural constituent of ribosome Identical to 50S ribosomal protein L31, chloroplast precursor (CL31) (RPL31) [Arabidopsis Thaliana] (GB:Q9FWS4); similar to similar to chloroplast 50S ribosomal protein L31 [Medicago sativa] (GB:AAC77927.1); contains InterPro domain Ribosomal protein L31; (InterPro:IPR002150) -0.0804232797851792 -0.827533177569252 0.425711821685064 1 -0.274565879214893 23.5977064958945 -0.0804232797851792 0.088492296918147
AT2G35750_at 4.63184084349812 4.31115483751669 4.11286300276336 4.17519043452302 4.68183776237801 4.17454971853933 4.38145746944861 4.87992130832718 4.4178709406414 4.32014575968614 4.32868036943389 4.86043640365358 4.57505353066693 4.41265931020661 4.69322710128666 4.64124759286615 4.34697442478061 3.87174779037587 4.43838598959128 0.233970240715065 0.229791828310388 0.238321650425326 0.233360505129525 0.223486317878301 0.247403383069914 0.224787535375737 0.224147813767877 0.238762406198257 0.220328955337498 0.225744117355826 0.224806237288258 0.231088584611050 0.233914234872968 0.227439290641163 0.232843440342365 0.24494453953459 0.238975966821292 0.220611534457280 2 2 - 15036986 15037144 15037062.727 15036908 15037369 - gene protein_coding_gene FALSE TRUE AT2G35750.1 unknown protein -0.0954321498554366 -0.82720535815515 0.425889733401326 1 -0.274823151145207 8.84779569481515 -0.0954321498554366 0.135440188835053
AT3G19350_at 2.09545027529091 2.06387790660994 2.02188406314688 2.31941767662381 1.56897655116048 2.14235117423980 1.37420253275886 1.96800208533663 2.23767413136128 2.18846485346162 2.00602718934462 2.01242428384826 1.94229917532191 2.05010667796085 1.91900837896884 1.67946392765332 1.72368443140280 2.29421865728923 2.45595484138128 0.210393028290314 0.211526215921068 0.208990973918454 0.207941561634982 0.207131905925178 0.212912499012851 0.212281366402025 0.211609926694144 0.217411618006652 0.212340993617798 0.214673578957342 0.210850340521174 0.211272729888703 0.210107094448046 0.223821010473140 0.208076650723183 0.209714924156678 0.212337354379268 0.206410752848244 3 3 + 6705532 6705886 6705723.364 6705499 6706133 + gene protein_coding_gene FALSE TRUE AT3G19350.1 polyadenylate-binding protein-related / PABP-related similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to poly(A)-binding protein [Mesembryanthemum crystallinum] (GB:AAB61594.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004) -0.101426509442006 -0.826690243351383 0.426169392818473 1 -0.27522723236377 4.06798796595847 -0.101426509442006 0.151941544710195
AT4G31720_at 8.98679183372645 9.11155979748282 8.89178288644008 8.95340132494067 9.22880457512703 9.32406238251172 8.57009479124965 8.9844030312687 9.25036305723096 8.68335443632808 8.79571741943466 8.65868882664562 8.7744262212837 8.8790713973602 8.69536251467803 8.6132565987265 8.39603246441864 8.5308842207815 9.09343371503103 0.123038992273408 0.121735846930606 0.119190198825333 0.118877793344101 0.122561427607841 0.135538585788579 0.122966162996568 0.119904305201158 0.125868004802441 0.121499648950238 0.119473589056517 0.115317953748216 0.12207257224655 0.117152099486207 0.123838012319710 0.117042391408594 0.143543404309385 0.128104578933137 0.117838017038593 4 4|0 -|/ 15354238 15355684 15355010.5 15353958 15356358 - gene protein_coding_gene FALSE TRUE AT4G31720.1|AT4G31720.2 TAFII15 (SALT TOLERANCE DURING GERMINATION 1); transcription factor Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15) similar to TATA box-binding protein associated factor 10 [Flaveria trinervia] (GB:BAD08452.1); contains InterPro domain Transcription initiation factor TFIID, 23-30 kDa subunit; (InterPro:IPR003923); contains InterPro domain Histone-fold; (InterPro:IPR009072) -0.0774100080621416 -0.82665538839312 0.426188320238838 1 -0.275254566361151 17.8448527582331 -0.0774100080621416 0.0774096635824448
AT2G29820_at 1.09127427610038 1.15909379296135 1.35400009274293 1.24038545444191 1.13239301783784 1.11563351462401 1.11479855141075 1.05678708185956 1.45473162153079 1.12845014492741 0.901060643038223 0.954632782897269 1.16912386497206 0.894040414565026 1.40090122145514 0.9382277320457 0.943415934996612 1.06156921950707 1.23962131213156 0.181549583932827 0.175842412080432 0.179507239542261 0.181137499955482 0.179863437769686 0.176132615088670 0.177860250232647 0.176679207234739 0.179586978608457 0.183687305911853 0.179035628275522 0.181216435291312 0.182882006440497 0.185603072035400 0.187765855398657 0.179470897733298 0.181916022690169 0.183054138506718 0.180348510282021 2 2 - 12735454 12735940 12735672.091 12735439 12736605 - gene protein_coding_gene FALSE TRUE AT2G29820.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G29830.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.0681408109249763 -0.826390576985562 0.426332140082206 1 -0.275462204230336 2.31161530752129 -0.0681408109249763 0.0251697787734854
AT4G13090_at 1.28792862794015 1.18391084530239 1.37178448257179 1.25752335447706 1.39464089474656 1.55450244789649 0.908670383445316 1.40275563429805 1.92994593952756 1.31001589638863 1.49402405066907 1.57302693682667 1.50374357425443 1.35637672270728 1.74048413672366 1.72263965554529 1.18251426576839 1.70882964750580 1.47128584772488 0.185010598485193 0.181250211409323 0.183746623179067 0.185272530906468 0.180874296009611 0.191503899854602 0.191261920120804 0.181770818820055 0.183407033037801 0.186994804635168 0.186925264417516 0.186836164199553 0.189447267218577 0.184080564678458 0.183903142008753 0.180874296009611 0.185844791192682 0.185875658842550 0.182442973647075 4 0|4 /|- 7631546 7632193 7631791.2 7631532 7632867 - gene protein_coding_gene FALSE TRUE AT4G13090.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Xyloglucan endotransglucosylase/hydrolase protein 2 precursor (EC 2.4.1.207) (At-XTH2) (XTH-2) (XTH2) [Arabidopsis Thaliana] (GB:Q9SV60;GB:Q4PSI7); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT4G13080.1); similar to Xyloglucan endotransglucosylase/hydrolase precursor (BobXET16A) (GB:Q6YDN9); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.0817927006897737 0.82632224632842 0.426369255909356 1 -0.275515772679151 2.84802496798327 0.0817927006897737 0.093761658185085
AT4G21110_at 9.30014263739123 9.82354606479854 9.7758495396629 9.63797725536234 9.8397562978211 9.87414351892913 9.12759646820176 9.72662286287578 9.5675013282253 9.37135122230222 9.3932695097969 9.26450413608218 9.37527904322018 9.50679801000818 9.232374489272 9.39339739386078 8.9767683436642 9.47931583042701 9.32518318562724 0.117922197650486 0.115405672416176 0.114311372732931 0.113549175544081 0.123717467317139 0.117020181223774 0.120226066728029 0.121252485046646 0.115412954806833 0.113119578638848 0.112900348509353 0.112291082866062 0.112216418250035 0.118469819541438 0.120040020013331 0.117213826481868 0.124619294606516 0.118396921230247 0.117223158702520 4 4 + 11267701 11268747 11268260.818 11267196 11268968 + gene protein_coding_gene FALSE TRUE AT4G21110.1 G10 family protein similar to Os01g0857700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044856.1); similar to G10 protein; Cytochrome c and b562 [Medicago truncatula] (GB:ABE90449.1); contains InterPro domain G10 protein; (InterPro:IPR001748) 0.0969113718917722 0.826319420493366 0.426370790892012 1 -0.275517987935349 19.0127336255935 0.0969113718917722 0.139840056483386
AT4G09430_at 0.813279936176695 1.13664136515507 1.61238949467915 1.39632550455784 0.720777105597264 1.43678836503957 1.21979000085962 0.944647495053224 1.73340457933721 1.16746729282878 0.980004414485228 1.32537299093517 1.42759499360792 0.91303677427482 1.49183897768238 1.22379734059047 1.17210669093909 1.77238809176021 1.15159122588902 0.208441371945495 0.208802487180859 0.216431077863890 0.220064171337628 0.209153183162978 0.211419134813800 0.213396597378762 0.214084757944743 0.21421251814778 0.211085746453582 0.219345645716792 0.212716809192753 0.214182785101569 0.221657118242574 0.215258429522159 0.219832402880745 0.214802650850119 0.227043423008074 0.214869963448291 4 4|0 +|/ 5974281 5975305 5974653.5 5970929 5975372 + gene protein_coding_gene FALSE TRUE AT4G09430.1 disease resistance protein (TIR-NBS-LRR class), putative similar to ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G72840.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G17600.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G48770.1); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.100213459878355 0.826302703974503 0.426379871315636 1 -0.275531092376723 2.47962419187451 0.100213459878355 0.148829202591183
AT3G52700_at 0.67801100385914 1.39362213380332 1.03956233089733 1.35621815985737 1.23690867327823 1.33297599472206 1.05604659546408 0.693400571147146 1.52796024513810 1.11310174605496 1.60449094348229 1.42526242207667 0.549000527311245 1.26330701029748 1.12583803500411 1.21160758215253 1.01016895492537 0.94057436786292 1.03694393833760 0.231777417973072 0.225507513512617 0.226735102976686 0.232252862148515 0.231981882490769 0.229055604234704 0.229231591564676 0.231195347746521 0.233054716322291 0.224575286895579 0.224575286895579 0.226319044343756 0.226959344812355 0.232057556321101 0.230697020927081 0.224575286895579 0.230460407450418 0.235923320648957 0.236515384557909 3 3 - 19543403 19544029 19543773.4 19543394 19544071 - gene protein_coding_gene FALSE TRUE AT3G52700.1 unknown protein 0.100712733749592 0.826258710690431 0.426403769111225 1 -0.275565578559575 2.28198478632823 0.100712733749592 0.150180270442077
AT4G22970_at 1.06204676028085 1.44670373400196 1.57228478668596 1.16531595464323 0.892508407569908 1.47145655073936 1.06528034714847 1.54077959127697 1.07961939058336 1.37664612055794 1.09964276492291 1.2506569341624 1.32197968327885 1.31812030250519 1.77861130024447 0.959694377165918 1.40192024041262 1.00418640808434 0.703491492578286 0.203930345905173 0.201247486628548 0.204830108547065 0.206216007731638 0.206203241710562 0.201247486628548 0.201247486628548 0.2061891953986 0.206616035262976 0.208662478337368 0.203089334782740 0.203779137416994 0.207700046443028 0.208299831673772 0.209755258969129 0.201247486628548 0.201247486628548 0.207747037474441 0.206737284326698 4 4 - 12033768 12034620 12034081 12033448 12043583 - gene protein_coding_gene FALSE TRUE AT4G22970.1 AESP (ARABIDOPSIS HOMOLOG OF SEPARASE); peptidase Putative separase gene, homologous to human and mouse separase protein. It contains a predicted 2Fe2S-ferredoxin domain that is not present in the proteins of other organisms. Also contains a putative EF-hand calcium binding domain. Mutant seeds exhibited embryo arrest at the globular stage. The endosperm also exhibited a weak titan-like phenotype. Transgenic plants expressing AESP RNA interference (RNAi) from the meiosis-specific DMC1 promoter exhibited alterations in chromosome segregation during meiosis I and II that resulted in polyads containing from one to eight microspores. AESP plays an essential role in embryo development and is required for the removal of cohesin from meiotic chromosomes. similar to peptidase [Arabidopsis thaliana] (TAIR:AT5G28550.1); similar to Os02g0770700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048252.1); similar to separin [Asper (GB:XP_753668.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidase C50, separase; (InterPro:IPR005314) 0.105143991753221 0.826150606538982 0.426462496659262 1 -0.275650314221006 2.43709893450348 0.105143991753221 0.161865336466102
AT1G52550_at 3.49875194031854 4.01556386789043 4.2902369181208 4.62106236182264 5.05368790856674 4.42068445272791 4.72387004206392 5.03067545475398 5.1818358380594 4.66369973709059 5.0156144574788 4.5809089892568 4.97546365790505 5.7838627000064 4.15119280768009 5.61010275211151 5.16834257623857 4.47471898355801 5.27217181736513 0.273104690039739 0.254815717178312 0.265762128459819 0.257172803558089 0.254739995328689 0.266266908419184 0.265151824622716 0.257967763071037 0.260231105382930 0.262549347643074 0.261060186317619 0.255920922656696 0.254739995328689 0.254739995328689 0.255901825853839 0.254739995328689 0.260371643440207 0.264408739111234 0.259000637828129 1 1|0 -|/ 19576856 19577498 19577042.889 19576596 19577699 - gene protein_coding_gene FALSE TRUE AT1G52550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15780.1); similar to Os01g0392100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043115.1) 0.104996326038588 0.825973971721433 0.426558465067867 1 -0.275788745692109 9.46144744980034 0.104996326038588 0.161541034671491
AT2G30110_at 9.80701634308436 10.1837931425114 10.1467157339338 10.3079530694309 9.91279156487187 10.0424409827878 10.0712077236186 10.2045545822055 9.58896261134433 9.51848370560054 9.85099503214574 9.74051219746137 9.87334242597807 9.5386587789795 9.65499249079632 9.70414538071755 9.78712938442466 9.64700206814972 9.7092717584996 0.123641047145235 0.117033937304770 0.120751149882656 0.118716645072463 0.118757636058206 0.119131111953265 0.116040763083950 0.120713604208100 0.126870087489573 0.122375066717224 0.116040763083950 0.117363468480688 0.121356600708332 0.1250549968853 0.12138772399973 0.120912403623578 0.124725008123794 0.122675000521458 0.120980295107046 2 2 - 12859728 12860158 12859925.727 12859449 12864694 - gene protein_coding_gene FALSE TRUE AT2G30110.1 ATUBA1 (Arabidopsis thaliana ubiquitin-activating enzyme 1); ubiquitin activating enzyme encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the contitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. similar to ATUBA2 (Arabidopsis thaliana ubiquitin activating enzyme 2), ubiquitin activating enzyme [Arabidopsis thaliana] (TAIR:AT5G06460.1); similar to ubiquitin activating enzyme 2 [Nicotiana tabacum] (GB:BAD00984.1); similar to ubiquitin activating enzyme 1 [Nicotiana tabacum] (GB:BAD00983.1); similar to Ubiquitin activating enzyme E1 [Nicotiana tabacum] (GB:CAA71762.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain Ubiquitin-activating enzyme repeat; (InterPro:IPR000127); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594); contains InterPro domain Ubiquitin-activating enzyme, E1; (InterPro:IPR000011) 0.0774284589589722 0.825578859405974 0.426773187740744 1 -0.276098307845284 19.7496440986287 0.0774284589589722 0.07788394141527
AT4G14400_at 10.9738803675128 11.4643525915125 11.3226781678595 11.2609826874265 11.1196694016689 10.6236889400865 10.3287029731519 10.2633160447076 11.0143233582510 9.7763624110944 10.0340893659629 10.5618620399455 10.0017821633172 10.7482944477653 9.06623217895335 10.0621921389876 10.1658851071652 10.8781359320323 10.2085105283878 0.133796319401441 0.129467368268863 0.136866563206506 0.135348487075394 0.134559295769857 0.136006282952431 0.128356853054516 0.133231906767609 0.136248559806043 0.137209860496787 0.129616336397055 0.132252041959609 0.135153460010178 0.128716978613127 0.143831387292661 0.130198646660265 0.135529882654402 0.131323601755826 0.131336011832165 4 4 + 8297804 8298331 8298058.727 8294448 8298598 + gene protein_coding_gene FALSE TRUE AT4G14400.1|AT4G14400.2|AT4G14400.3 ACD6 (ACCELERATED CELL DEATH 6); protein binding encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14390.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT4G05040.3); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to Os11g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065908.1); similar to hypothetical protein LOC_Os11g08050 [Oryza sativa (japonica cultivar-group)] (GB:AAX95030.1); contains InterPro domain Ankyrin; (InterPro:IPR002110)|similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14390.1); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to Os11g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065908.1); similar to hypothetical protein LOC_Os11g08050 [Oryza sativa (japonica cultivar-group)] (GB:AAX95030.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0904677721138103 0.82545295072549 0.426841627582188 1 -0.276196927466778 21.1810961989127 0.0904677721138103 0.121710638532624
AT4G38800_at 10.4440197054538 10.4900615668779 10.7487939478559 10.6567843170017 10.8491693370272 10.6931683087083 10.4369699955548 10.3864604206837 10.6110134178227 10.3643013790220 10.4088905435065 10.2619577931401 10.2554811360172 10.2734599895480 10.1212665620961 10.390908902288 10.3948218930682 10.4262474328347 10.4536729497656 0.0915008652515614 0.0856910252914469 0.089306397951948 0.0909511505707996 0.0899328926703497 0.0913633085254009 0.0888698827299375 0.0888993475526772 0.0962338416234427 0.0855498817047314 0.0902510623644699 0.0855114426879633 0.087242521909872 0.091610257977784 0.0899204978788 0.0884159987265727 0.09480309005334 0.0900925140724365 0.0865741910230566 4 4 - 18113410 18114578 18113862.545 18113155 18115127 - gene protein_coding_gene FALSE TRUE AT4G38800.1 ATMTN1; catalytic/ methylthioadenosine nucleosidase similar to ATMTN2, methylthioadenosine nucleosidase [Arabidopsis thaliana] (TAIR:AT4G34840.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85633.1); contains InterPro domain Purine and other phosphorylases, family 1; (InterPro:IPR000845) 0.0689505440989986 0.825376779933463 0.426883035082517 1 -0.276256582860550 20.9846577151116 0.0689505440989986 0.0334998980245967
ATMG00140_at 1.2320079998662 1.11843361814894 1.34529339259786 1.58929650331347 0.924896856038965 1.32195828741722 1.23860897401403 1.32785816157701 1.21805870482846 1.34854494782687 1.00279395864273 1.22952207295652 1.29208882777265 0.893794225008097 1.06029352978831 0.987086428084032 1.28052124830445 1.15940718517227 1.44593921711812 0.187221386190884 0.189403245923608 0.188586158615295 0.188869953537592 0.192681951814707 0.192593305473478 0.194966364449331 0.194579555441485 0.192467493931655 0.195157904916196 0.196211448496373 0.187221386190884 0.187761963215558 0.187221386190884 0.187221386190884 0.187221386190884 0.193543343467184 0.191237825907855 0.193880888525631 M M + 34605 35068 34831.091 34599 35102 + gene protein_coding_gene FALSE TRUE ATMG00140.1 Identical to Hypothetical mitochondrial protein AtMg00140 (ORF167) [Arabidopsis Thaliana] (GB:P93283); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.07909589200901 -0.825218273352478 0.426969210036498 1 -0.27638070653787 2.48764558631702 -0.07909589200901 0.0844357550382051
AT4G17620_at 8.1232385976214 8.603605979201 8.58129549970005 8.55176703658402 8.3006314759625 8.2160636096004 8.1436024141869 8.19063208668929 7.95331591465429 8.17034583942223 7.81841053460581 8.22631366786401 8.22276220678213 7.86744717685727 7.38982847781095 8.11523312330764 7.47367503739436 7.35045080487868 8.21717620120042 0.165058516886400 0.162770868312195 0.167181217461931 0.159796546140427 0.161800372690614 0.174287127788246 0.160729118759412 0.163098197587030 0.189382475002408 0.165974542366933 0.162241963075979 0.164202692309813 0.166842862582053 0.169679726443823 0.167586550931867 0.164033250195733 0.179824602352512 0.174522490041958 0.160666726593399 4 4 + 9823924 9824832 9824517.2 9821927 9825019 + gene protein_coding_gene FALSE TRUE AT4G17620.1|AT4G17620.2 glycine-rich protein Identical to Protein Dom3z homolog, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8RY73;GB:O23603); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30460.1); similar to glycine-rich protein -related [Brassica oleracea] (GB:ABD65180.1); contains domain Uteroglobin-like (SSF48201); contains domain DOM-3 RELATED (PTHR12395)|Identical to Protein Dom3z homolog, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8RY73;GB:O23603); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30460.1); similar to glycine-rich protein -related [Brassica oleracea] (GB:ABD65180.1); contains domain DOM-3 RELATED (PTHR12395) -0.079213943517139 -0.825003616534897 0.427085930542272 1 -0.276548767280726 16.2996684776665 -0.079213943517139 0.0849534960665369
AT4G39500_at 1.93683517969620 1.86254511491745 1.79062342639295 2.08342237926727 1.68072057951787 2.12537406478928 1.9790640891277 2.63021255997183 2.42532701163311 2.25682118816199 2.40337223080065 2.22326009278365 2.33700886347404 2.69343601675531 2.31663805623904 2.21782604941709 2.25751192622796 2.09558919522889 2.31986849652539 0.202384703620651 0.197588629159949 0.202161286997671 0.194312219225229 0.206215538599141 0.198753113474841 0.210403251644993 0.202191391988748 0.204053416285110 0.191387282378858 0.202130005457213 0.192295442918328 0.194020887658643 0.195093960133605 0.191387282378858 0.19620769933011 0.200383911769622 0.195368465224532 0.201832697727823 4 4 - 18366962 18367468 18367201 18366944 18368353 - gene protein_coding_gene FALSE TRUE AT4G39500.1 CYP96A11 (cytochrome P450, family 96, subfamily A, polypeptide 11); oxygen binding member of CYP96A similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A12 (cytochrome P450, family 96, subfamily A, polypeptide 12), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39510.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0990271925053945 -0.824792167695303 0.427200927466562 1 -0.276714279080429 4.33714260886306 -0.0990271925053945 0.146122227626624
AT4G01510_at 3.01251630981811 3.33982423520049 3.45443940467222 3.312233862473 4.08733307786407 3.14536396114611 3.77029637404786 4.42720773382575 4.11448857178495 3.93527019197038 4.08101987357389 3.78422121681536 3.62221346123553 4.17025228949172 4.09029374151402 3.99133733735993 3.43674419214063 4.49951424259884 4.15768350100763 0.202124806678477 0.204221162798177 0.206097642409556 0.201237688276628 0.201178787823194 0.204847470074044 0.206264793690098 0.196362115092623 0.208444909935634 0.198898994568869 0.196362115092623 0.201140912138224 0.198825915863672 0.203690148530970 0.212111002788883 0.196604436506482 0.204683497886295 0.198804266117344 0.196362115092623 4 4|0 +|/ 643091 644155 643621 642733 644336 + gene protein_coding_gene FALSE TRUE AT4G01510.1 ARV2 similar to ARV1 [Arabidopsis thaliana] (TAIR:AT1G01020.1); similar to Os03g0784300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051472.1); similar to hypothetical protein [Oryza sativa] (GB:AAK72888.1); contains InterPro domain Arv1-like protein; (InterPro:IPR007290) -0.123658231965308 -0.824619279766544 0.427294968269742 1 -0.276849579754876 7.5829503528454 -0.123658231965308 0.208111544394981
AT3G01570_at 1.23466151741419 0.89180747633613 1.31841241795891 0.577635766564366 1.14717219768124 1.11226759043677 1.08620534884389 0.637225401911432 1.46246059679479 1.18370441185536 1.32373820008998 1.01674277589266 1.10733722350366 0.889919742995647 0.9871741096325 0.759235533033553 1.10079365788445 1.00259574063107 1.28177560955776 0.21372898590914 0.205455347701945 0.216725033509137 0.209243867491606 0.206365083438954 0.207118345270009 0.204375221630864 0.208091755000978 0.204375221630864 0.228402885986773 0.207242772723062 0.209869184204704 0.211890576645018 0.212933641430007 0.209621857753797 0.207285165878808 0.210933748606533 0.214378807308088 0.210254522252409 3 3|0 -|/ 222198 222744 222474.6 221946 222834 - gene protein_coding_gene FALSE TRUE AT3G01570.1 glycine-rich protein / oleosin Identical to Putative oleosin 5 [Arabidopsis Thaliana] (GB:Q9SS98); similar to OLEO2 (OLEOSIN 2) [Arabidopsis thaliana] (TAIR:AT5G40420.1); similar to lipid body membrane protein [Daucus carota] (GB:AAB24078.1); contains InterPro domain Oleosin; (InterPro:IPR000136) -0.104737179705393 -0.824571164364257 0.427321142652564 1 -0.276887230067586 2.16705129582365 -0.104737179705393 0.161331157294152
AT3G56650_at 9.01431662840965 8.90686505515145 8.77703156542995 8.46993349640524 9.41761062868188 8.82045667590746 9.6246448678104 9.15584600415992 9.37815109255554 9.26202924419839 9.6542869765561 9.43559906967848 9.14129193309768 9.33528064527512 9.69704408127152 9.2179114749783 9.32285807665677 8.99915271555063 9.08549458752018 0.147002160722264 0.143149751292176 0.149384604262332 0.153955264874948 0.141855133804066 0.154076813109417 0.138772063288197 0.139786630866524 0.151183576646022 0.140499948535473 0.141832568896203 0.140672068628983 0.139525474803084 0.144681837961914 0.144866053050385 0.146635773140339 0.149050522619152 0.145785393899535 0.141060053472961 3 3|0 +|/ 20995981 20996795 20996412.9 20995731 20997110 + gene protein_coding_gene FALSE TRUE AT3G56650.1 thylakoid lumenal 20 kDa protein similar to thylakoid lumenal 29.8 kDa protein [Arabidopsis thaliana] (TAIR:AT1G77090.1); similar to Os12g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066340.1); similar to Os01g0805300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044559.1); similar to thylakoid lumenal 29.8 kDa protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96032.2) -0.0978117835341752 -0.824404022516566 0.427412074734779 1 -0.277018003690094 18.3194979967734 -0.0978117835341752 0.142937315518640
AT1G34070_at 1.89954295453803 1.85528954837759 1.93136262128102 2.46499905694352 1.73077113671609 2.29317887963982 1.59421879810499 2.04342863143405 2.15560156530251 1.98057312520472 1.69818075922391 1.95542595089991 2.29378002399103 2.39120524920013 2.26925701634826 1.85490648531693 2.02510036096243 2.37116529868913 2.34268336458356 0.187485141324555 0.183633323937409 0.185128126521977 0.185208809864370 0.189450993240854 0.183310095396134 0.187517679615429 0.188360639071125 0.189474932914714 0.19080491945017 0.186986457161176 0.181862663058619 0.190733010280062 0.181862663058619 0.187162024165463 0.183070923845478 0.181862663058619 0.181863730691904 0.196505467933576 1 1 + 12402589 12403147 12402868.727 12402261 12403187 + gene protein_coding_gene FALSE TRUE AT1G34070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48050.1); similar to Os12g0429600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066674.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAT93988.1) 0.102358115956744 0.824118128593175 0.427567642712926 1 -0.27724163656697 4.11009745076734 0.102358115956744 0.155250207666090
AT2G31410_at 6.52712682605998 6.70830097136221 6.7933495116531 6.40627807345881 6.29031736441056 6.50450667059854 7.03981503473138 7.05795099112856 4.52224311682558 4.8834128661431 5.27426029969282 5.35162411961086 5.28769888869418 5.14222344356418 5.54136793731216 5.37527026583522 5.56262228912847 4.61393064402239 4.92492257665958 0.228784737794625 0.223429119927931 0.221474478324773 0.220281884856995 0.222686163305291 0.228957826381569 0.225443763949893 0.223709067460613 0.226963967225618 0.220482949922019 0.238540176726164 0.222164623729114 0.225060139304567 0.232642547190040 0.218871928986644 0.222070035526368 0.230913344151118 0.22379799571919 0.21917262923048 2 2 - 13399614 13399872 13399735.727 13399099 13399928 - gene protein_coding_gene FALSE TRUE AT2G31410.1 similar to Os02g0595400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047313.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53709.1) 0.0785398326580824 0.823974228081745 0.427645959826313 1 -0.277354173259941 11.6886978083547 0.0785398326580824 0.0827871411078972
AT4G28520_at 1.34003305736051 1.11505408176531 1.07597933748477 1.39727272727858 1.63584922628681 1.15961412608633 1.38933464870481 1.43090113564196 1.87205455141692 1.91092319264697 1.77985390451884 1.56636885156787 2.01001274375497 1.69037956058074 1.56798045704252 1.88911648257225 1.64519161129557 1.84019226784926 1.97104951219547 0.213686362728720 0.212188835892248 0.219518307261087 0.218746186936410 0.211987558315517 0.219351129285550 0.217883794178947 0.215356577036163 0.213321767330611 0.21558712166775 0.210242617008983 0.213888101470923 0.21416052074189 0.209333823941545 0.2211007300427 0.211598448322095 0.216096459920377 0.231555583823748 0.216777384972444 4 4|0 +|/ 14088809 14089498 14089148.2 14087573 14089802 + gene protein_coding_gene FALSE TRUE AT4G28520.1|AT4G28520.2|AT4G28520.3|AT4G28520.4 CRU3 (CRUCIFERIN 3); nutrient reservoir|CRU3 (CRUCIFERIN 3) 12S seed storage protein similar to CRA1 (CRUCIFERINA), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G44120.3); similar to 11S globulin precursor [Sinapis alba] (GB:AAX77384.1); similar to Cruciferin CRU1 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin CRU1 alpha chain; Cruciferin CRU1 beta chain] (GB:P33525); similar to cruciferin precursor (GB:AAA32989.1); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051)|similar to CRA1 (CRUCIFERINA), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G44120.3); similar to 11S globulin precursor [Sinapis alba] (GB:AAX77384.1); similar to Cruciferin CRU1 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin CRU1 alpha chain; Cruciferin CRU1 beta chain] (GB:P33525); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051)|similar to CRA1 (CRUCIFERINA), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G44120.3); similar to 11S globulin precursor [Sinapis alba] (GB:AAX77383.1); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) -0.0855119885530316 -0.82376742962453 0.42775852553731 1 -0.277515868922151 3.15132782773491 -0.0855119885530316 0.107010576662447
AT1G56380_at 1.53928813906057 1.42069509377402 1.79258796378851 1.91599344837501 1.36366936745189 1.52362312299866 1.20509904922881 1.69269902585603 1.76424766426250 2.04463279194322 1.40933435198077 1.4972379558171 1.92128258743720 1.48478714892864 1.21530227867978 1.54774799516403 1.41062024445919 1.72192864548500 1.81170025135781 0.196748188787455 0.189413818132534 0.191743878820038 0.188819185852461 0.187285865896682 0.191382582504388 0.189162006166350 0.186803885594088 0.188812416153757 0.192148865729879 0.186803885594088 0.194157098366048 0.193566377484883 0.189501510611261 0.193273965088469 0.186803885594088 0.189088418549290 0.194888300422966 0.187436834816156 1 1 + 21105728 21106270 21106066.636 21105039 21106366 + gene protein_coding_gene FALSE TRUE AT1G56380.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62110.1); similar to Os05g0403400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055498.1); similar to Os04g0637500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054025.1); similar to Os11g0206400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067458.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.0814868014267759 -0.823657267899764 0.427818497439882 1 -0.277601989872603 3.25648542807426 -0.0814868014267759 0.0936147621665603
AT3G21170_at 2.50735770639563 2.01923826064452 2.63464493243461 2.39206547115670 2.29307783465938 2.48925760583593 2.03892298794587 2.19980243381317 2.56367749029639 2.55066895979348 2.49579078605725 2.25118819493408 2.48581168407373 2.12169776157392 2.20250741398181 2.09621267467193 3.24931776406473 2.5348237495687 2.44995753322488 0.213073463385873 0.209833975541586 0.209192581803556 0.220344328180371 0.212955376489006 0.210968414358122 0.215209747455887 0.208382536968591 0.224681434963912 0.214134846680350 0.212918005618978 0.207859721484676 0.218422513459765 0.209202794666553 0.215499350997757 0.207872906734252 0.209025960386324 0.219169989288219 0.210917283428865 3 3 + 7420609 7421114 7420894.091 7419982 7421166 + gene protein_coding_gene FALSE TRUE AT3G21170.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G21130.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE85493.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0845826031663554 0.823654813858462 0.427819833480528 1 -0.277603908249865 4.79734761147107 0.0845826031663554 0.104045162486790
AT2G18100_at 2.3146389887891 2.32900552416106 2.42514250487254 2.21581505183164 2.26542962699867 2.54054352590036 2.23935688580963 2.18229279421182 2.53583502703436 2.51772418094365 2.22212902785142 2.08192006902217 2.37011210698966 1.99391178547503 2.45597844340804 2.31984150663811 2.78802078331621 2.50016251223071 2.69694482521029 0.214305178512025 0.220375582163852 0.224842326196115 0.221503329047582 0.220254249197711 0.219005003867527 0.217879390531624 0.215267417613755 0.226685152540892 0.223466358678569 0.218907334103456 0.214305178512025 0.221133466255628 0.219128157996164 0.225804308385941 0.218344016122173 0.219916341546399 0.223031500938402 0.220962833234642 2 2|0 +|/ 7877279 7878376 7877839.2 7874910 7878724 + gene protein_coding_gene FALSE TRUE AT2G18100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36210.3); similar to hypothetical protein LOC_Os10g36830 [Oryza sativa (japonica cultivar-group)] (GB:AAP54584.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93615.1); similar to Os03g0112800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048731.1); contains InterPro domain Protein of unknown function DUF726; (InterPro:IPR007941) -0.0732913429358915 -0.82355704834452 0.427873061696857 1 -0.277680329608485 4.77653354970311 -0.0732913429358915 0.060684807276353
AT2G34570_at 4.09744122271262 4.27998132272832 3.98627732185499 3.68956534869635 4.09060168078979 3.63123897396559 4.18713145051076 3.62205492816477 2.97720742266209 2.80638710346086 3.46094479357106 3.82718546950824 3.51133510047220 3.14462125561866 3.57765250830825 3.21735767167477 2.77707477408514 2.91445159179871 2.95702890492618 0.204481078308279 0.205375543260690 0.208263563547271 0.209394049226182 0.203489748576596 0.203024466478844 0.204398185463815 0.20555373788501 0.204847497427827 0.21015943827181 0.202862074333045 0.205118549854594 0.20796635610804 0.212087338028374 0.202337217219836 0.201001765081681 0.212230470286159 0.209707395214237 0.208098494206388 2 2|0 -|/ 14570304 14571421 14570781.4 14569979 14571861 - gene protein_coding_gene FALSE TRUE AT2G34570.1 MEE21 (maternal effect embryo arrest 21) similar to Protein of unknown function DUF652 [Medicago truncatula] (GB:ABD33130.1); contains InterPro domain Protein of unknown function DUF652; (InterPro:IPR006984) 0.0965276761220736 0.823473232064235 0.427918698791205 1 -0.277745840818532 7.05672105083423 0.0965276761220736 0.139701795875986
AT2G36270_at 3.44707245481906 3.37364697492957 3.54379409808691 3.72254005318853 3.29417614878021 3.48171993143373 3.04879818975706 3.70511557877037 3.75181204626654 3.73349406232263 3.5706498616365 3.54565659132082 4.01733526712441 3.70792914723335 3.81861501133874 4.11355597070803 3.28717431483446 4.01690607527948 3.60094612735123 0.205877866153785 0.197096816692641 0.193218268366425 0.194742466743376 0.207551310172909 0.199700035900238 0.197367019161579 0.201683030629612 0.204610220291002 0.194587530985189 0.196942321475274 0.195873954967014 0.208521432390529 0.195489883899117 0.193339825363341 0.193904788529969 0.202826971794700 0.194828813755455 0.194104013086882 2 2 - 15212062 15212870 15212693.727 15211843 15214607 - gene protein_coding_gene FALSE TRUE AT2G36270.1 ABI5 (ABA INSENSITIVE 5); DNA binding / transcription factor/ transcriptional activator Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. similar to ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2) [Arabidopsis thaliana] (TAIR:AT1G45249.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE77843.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0906048131288355 0.823454926171757 0.427928666590379 1 -0.277760148017541 7.17968052467799 0.0906048131288355 0.122767203644209
AT1G72430_at 6.40337267877998 7.20363797102385 8.32929660317289 8.96033639325984 8.37294964229311 8.34330714009206 9.50264525488142 9.97099627935835 9.84379977531222 9.32201383547635 10.5401660961018 9.37960823791759 10.3787344297001 10.2322218304077 8.61142514886926 10.1944535707593 9.21204792290658 9.28637468826843 10.0101670925899 0.244531043485045 0.234712719724018 0.225115943481234 0.217262219266022 0.218998194522162 0.238039414397010 0.208737299471091 0.210324709745076 0.233785899436526 0.212705839951508 0.211116748084085 0.208493231627613 0.212413648763681 0.216716670953978 0.214409493218559 0.210465491789811 0.223385989655001 0.220901625647736 0.212944770351538 1 1 - 27268814 27269107 27268944 27268573 27269292 - gene protein_coding_gene FALSE TRUE AT1G72430.1 auxin-responsive protein-related similar to auxin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G17345.1); similar to Os08g0452500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061954.1); similar to auxin-induced protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36435.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.117680744091877 0.823423238719145 0.42794592119006 1 -0.277784913085265 18.1131706912289 0.117680744091877 0.194166030617347
ATCG00540_at 11.7525220685024 12.3707591732217 12.1796443593425 12.0305870052772 12.0914702720664 11.983879495552 12.2622519627796 12.5455311980959 13.0886429110531 13.111477761961 13.5891646073973 13.7589028377001 13.2844969078581 13.5065942390209 13.2444981401859 13.5047113528944 12.9373731749681 13.0177941102994 12.8402663316167 0.082440744241903 0.080127438577078 0.0792766741692277 0.0820745848812154 0.0788068689569546 0.0823738060606591 0.0788959600133683 0.0846159764387546 0.0840442796058571 0.0799399557596547 0.0813467253996218 0.082550051569969 0.081258466084031 0.0818101319215155 0.0796263618479554 0.0809956838478874 0.0915009699587026 0.0820200095092606 0.0796777272021582 C C + 62062 62528 62307.091 61657 62619 + gene protein_coding_gene FALSE TRUE ATCG00540.1 Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. Identical to Apocytochrome f precursor (petA) [Arabidopsis Thaliana] (GB:P56771); similar to Apocytochrome f precursor (GB:P36438); contains InterPro domain Cytochrome f; (InterPro:IPR002325); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054) 0.0903043844116165 0.823352371557544 0.427984511782592 1 -0.277840295718602 25.3365328199384 0.0903043844116165 0.121909378668918
AT3G19210_at 2.01614549843643 1.70750812663074 2.07101246369384 1.40888411101261 1.70784265624967 1.90584532052830 2.01867726699224 1.76888856414692 2.18298896735994 1.60425155323476 2.14157854745653 1.59000607331047 1.14703625725772 1.20156926839634 2.12967760837020 2.16976749488083 1.96711999396681 2.47406052989159 2.03255641722312 0.252591505981508 0.253652686028074 0.252591505981508 0.266850939222192 0.264307596173592 0.252591505981508 0.253193160064277 0.252591505981508 0.268419423703286 0.252591505981508 0.260421513001848 0.261476747582023 0.266436674443291 0.263511581712761 0.268381480877904 0.260285819894273 0.262108693096106 0.262620001895376 0.252591505981508 3 3|0 -|/ 6653552 6654402 6654104.167 6652751 6658944 - gene protein_coding_gene FALSE TRUE AT3G19210.1 ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54); ATP binding / DNA binding / helicase Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination. similar to ATRX/CHR20, ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT1G08600.1); similar to DNA repair protein, SNF2 family (ISS) [Ostreococcus tauri] (GB:CAL55125.1); similar to Os02g0762800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048207.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.0958695335475528 -0.823290161409523 0.428018390120763 1 -0.277888909469674 3.72186764310997 -0.0958695335475528 0.137931236538864
AT4G26040_at 2.23425783623638 2.43640392979367 2.49637469268273 2.58896744378949 1.63464445586435 2.29389695878960 1.74731067653263 2.57885336127935 2.56384683900574 2.57846214441435 2.23107149999665 2.25286452218066 2.33461245499339 2.34534049001638 2.61593630252325 2.32350674766812 2.35381877194145 2.14313182294479 2.53544379116351 0.187037932327076 0.182759403886136 0.186872958379447 0.185214445554600 0.182759403886136 0.189981502294268 0.187537156918579 0.186442048282013 0.187964055589429 0.186061955352778 0.182759403886136 0.182759403886136 0.184920768699008 0.190106278070448 0.187497270055981 0.186368117806855 0.183369239531582 0.190201307716144 0.187102320210814 4 4 + 13206881 13207167 13207062.091 13206844 13207212 + gene protein_coding_gene FALSE TRUE AT4G26040.1 unknown protein -0.114975580753538 -0.82319961015036 0.428067705619416 1 -0.277959664478123 4.69348179506817 -0.114975580753538 0.187627775479626
AT3G02270_at 0.916953753135793 0.936415929155116 1.15168838936851 1.42840420875507 0.899547205290685 0.861074754964833 0.878248046155093 0.844889083543982 1.40807111256001 1.38736356305810 0.96421372727553 1.08645166620306 1.01458641158198 0.693494366105579 0.470394339884795 0.97805200540679 0.893231816892755 1.16175621814251 0.92700924030226 0.191619844126554 0.191619844126554 0.202225367836608 0.207260549970878 0.195121447997585 0.194220819445157 0.191619844126554 0.195851296114747 0.197148342423609 0.196391611282446 0.193432005947499 0.191619844126554 0.195981124671038 0.214529820354648 0.199354971396099 0.19902032687701 0.207996831579807 0.212007342120794 0.192271258778634 3 3 - 449017 449515 449309.818 448984 451014 - gene protein_coding_gene FALSE TRUE AT3G02270.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G34970.1); similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G18300.1); similar to hypothetical protein DDBDRAFT_0185388 [Dictyostelium discoideum AX4] (GB:XP_639192.1); similar to Os02g0812400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048478.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.0709950665531102 -0.82297991813016 0.428187368711196 1 -0.278131299324376 2.06394627508451 -0.0709950665531102 0.0488073584672012
AT3G18720_at 0.893899979612882 0.826034282678357 1.00056338611207 1.38901533764012 0.904727740820965 0.648513944969719 0.612761345149793 0.936427435184215 0.992779789941922 1.29746956176845 1.09702656993365 1.12911232929656 1.28951820305404 0.974418888706802 1.35184117165845 0.83810384849617 1.19778415944034 1.20748530608617 1.12444585018376 0.190326465349044 0.188946840334568 0.194567217123576 0.197628122112235 0.188946840334568 0.191727487240534 0.188946840334568 0.191918613649762 0.197173165095247 0.194007910768634 0.195609140463644 0.196096113933385 0.201366014736383 0.194856474202287 0.193734602646609 0.196213578185489 0.191984720128124 0.196744529156086 0.194550317560352 3 3 - 6444446 6444998 6444723.545 6444373 6445765 - gene protein_coding_gene FALSE TRUE AT3G18720.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G56470.1); similar to F-box protein family-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08724.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.0829269586743604 0.822955675504727 0.42820057468408 1 -0.278150236473383 2.03843945329538 0.0829269586743604 0.0987937411382068
AT4G03153_at -0.36163485587827 -0.107943851530803 -0.40944406969315 0.112154236999485 0.0555648808606702 0.0198776763713766 -0.310914592914883 0.0506913676749999 0.151203658155897 -0.0239842648537096 -0.369138867662154 -0.300524894433566 0.0534740098277194 0.0721940243684024 -0.355522190129943 -0.0401838217418443 -0.344561947013564 0.981079686346808 0.674615517931046 0.224991041697655 0.220447280933914 0.221285402944868 0.223471274092173 0.219378407059430 0.222419299902768 0.219451191022766 0.219378407059430 0.2330472132821 0.228397824172871 0.230455568403041 0.219378407059430 0.222963090887347 0.224418609444572 0.223426017579535 0.225978865795269 0.226366494303967 0.233949035686528 0.234213442343713 4 4 - 1394858 1395516 1395137.545 1394845 1395588 - gene protein_coding_gene FALSE TRUE AT4G03153.1 kinase interacting family protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03470.2); similar to Os07g0666600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060570.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99825.1); similar to Os12g0605200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067222.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.0890938197511721 -0.822850609148413 0.428257811856847 1 -0.278232303519171 -0.00426599916900006 -0.0890938197511721 0.118445313232754
AT1G69430_at 1.28305059372555 1.71834314711196 1.49501052480053 1.81299011185312 1.52321672804302 1.49520875001186 1.772719039048 1.67075852763951 2.30484554831661 1.55864051518850 1.35739663456051 1.53804372816297 1.90024372430719 1.92218345512806 1.36403239290472 1.94472013762887 1.64082003703603 1.66090017213391 1.53642403956120 0.186287578122613 0.183574891066864 0.187630150048002 0.185968378050985 0.187751902073121 0.185704678007511 0.187654851306633 0.188592226224596 0.186318162245153 0.185979321412372 0.183490762835915 0.191278170719693 0.190951126519739 0.190284877087910 0.187901997986860 0.187308577989467 0.184863554996987 0.186676783553963 0.188709930447057 1 1 + 26102185 26102647 26102373.364 26101450 26103051 + gene protein_coding_gene FALSE TRUE AT1G69430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26650.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55692.1) -0.0817693986633884 -0.822298208041973 0.428558827998549 1 -0.278663631886222 3.3294184625733 -0.0817693986633884 0.0950653106321101
AT4G01730_at 0.981604117982003 0.91377058962975 0.825059699439984 1.07168922873234 0.800553109098625 1.00724829180145 0.958046586473038 0.808151563948254 1.51771029776229 1.46664054117845 1.26831010123861 1.29409085062774 1.38253677868731 0.935576964742241 1.45557995106737 1.26856740155773 1.27756574546381 1.42688058071354 1.35503545231737 0.178596921589067 0.187662097276259 0.184254458848230 0.181706349567180 0.180354053050087 0.179633223801928 0.181337045102909 0.186525633095876 0.182474498196088 0.185271906933799 0.186605016161762 0.179921615228235 0.179789008559016 0.178915057276205 0.182215870534911 0.177707537810127 0.189186788732048 0.18431143927408 0.191475103820709 4 4 + 751406 751888 751727.818 749922 752034 + gene protein_coding_gene FALSE TRUE AT4G01730.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT2G33640.1); similar to Os12g0263100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066524.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE83246.1); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) -0.0735395912819512 -0.821987280821167 0.428728321275391 1 -0.278906300150967 2.28831572031235 -0.0735395912819512 0.062544102754293
AT2G38840_at 3.14032614621711 3.23955598755706 3.16294049797274 3.18413339128335 3.43861983842501 3.27475041853588 3.20833016627134 3.45796522904483 3.48082523989624 2.90164008964332 3.17822754854884 3.47780695993161 3.48849560609813 3.38718640120368 3.33178317783287 3.23447567170635 3.25045292622673 3.24234485118859 3.16811697929675 0.164811762940670 0.165544711670664 0.170509812061544 0.165033924678162 0.167444140878837 0.166909339235134 0.169717017256762 0.166583239980947 0.174943343823278 0.167604022872075 0.167889173573633 0.165772752312625 0.165757668021565 0.164761219358790 0.167775866139311 0.164026473668946 0.169901412098259 0.165182216960916 0.170314478459533 2 2|0 +|/ 16234952 16239284 16237514.05 16234407 16239534 + gene protein_coding_gene FALSE TRUE AT2G38840.1 guanylate-binding family protein similar to GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT5G46070.1); similar to guanylate-binding family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99346.1); similar to Os07g0181700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059046.1); similar to putative guanylate binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44686.1); contains InterPro domain Guanylate-binding protein; (InterPro:IPR003191) 0.0719429304224937 0.821942769040284 0.428752589272253 1 -0.278941033538511 6.51701474897385 0.0719429304224937 0.0545785305302578
AT1G30500_at 5.97132627976534 5.9006803092184 6.28276576031494 6.41577712156415 7.01427764674082 6.44205387207578 6.69703533751647 6.72797224114214 5.23410061941547 5.31472720867115 5.33033631977343 5.08743634403779 5.97569700854284 5.54702762596219 4.75293383800563 6.05655867772507 5.60227282114417 5.33583068009839 5.97420981580555 0.242819279326434 0.242417618421887 0.240887303590928 0.250752275763124 0.256142730272596 0.246138050721078 0.252666685758406 0.254807882574443 0.246854147046065 0.240827235071445 0.242194856949037 0.243382165890157 0.245243703363572 0.246989638979522 0.247088123612883 0.240827235071445 0.246243255726153 0.249561341854995 0.240827235071445 1 1|0 -|/ 10804720 10805085 10804833 10804432 10806301 - gene protein_coding_gene FALSE TRUE AT1G30500.1|AT1G30500.2 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-7 (AtNF-YA-7) (NFYA7) [Arabidopsis Thaliana] (GB:Q84JP1;GB:Q9S9P9); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT2G34720.1); similar to CCAAT-box transcription factor complex WHAP5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99388.2); similar to Os12g0613000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067261.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.083898754021898 0.82146455822477 0.429013369258293 1 -0.279314086789454 11.9158315105632 0.083898754021898 0.102538358933274
AT2G27030_at 9.5293604680347 9.33583368648778 9.14651677580462 9.2217349759088 9.42955494743866 9.15352482636833 9.08915791963784 9.20683702535635 9.73331586274428 9.33885956101193 9.99780188103495 10.075366137888 9.59966878615104 9.70336856367233 9.75501880206288 9.67012467845995 9.12802697329794 9.85809747758896 9.49903708180586 0.114338080010384 0.116756228242137 0.123944721293741 0.124553716770774 0.115010498484573 0.118759759072783 0.118267039862002 0.115008875519284 0.125928702347532 0.116648987418993 0.119559136311093 0.115204873587896 0.115212140407224 0.120793152114937 0.123601581329401 0.115438504437207 0.124038630111337 0.118139856518184 0.118206275693568 2 2 + 11539149 11540085 11539833.636 11539082 11541382 + gene protein_coding_gene FALSE TRUE AT2G27030.1|AT2G27030.2|AT2G27030.3 CAM2 (CALMODULIN-2); calcium ion binding encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin-3 (GB:AAA32765.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to Calmodulin-related protein (GB:P27164); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0736161335832122 0.821413483140217 0.4290412279707 1 -0.279353919350526 18.8876509103164 0.0736161335832122 0.0631475003903682
AT2G02160_at 8.5952641257804 8.7894695383469 8.62029980325133 8.56151535291898 8.94464087117028 8.89346113865425 8.25767455032446 8.46339984250906 8.88360488732502 8.88650374020439 8.62227424832115 8.62057666940132 8.22682944334968 8.5431988201203 8.36018391844686 8.69440240529373 8.47572058801734 8.52385323949191 8.86763329778161 0.127048766825154 0.127847048343317 0.128197750044423 0.129911328986564 0.133940919844545 0.134643106127216 0.127136708088646 0.132728340433471 0.135460978580249 0.126048309321380 0.132744988910709 0.127665711071423 0.131740541657521 0.134784428384692 0.128836287675498 0.129804465222884 0.130601515201815 0.128938513442919 0.127082776892585 2 2 - 553486 553979 553760.455 553109 556112 - gene protein_coding_gene FALSE TRUE AT2G02160.1 zinc finger (CCCH-type) family protein similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to H0624F09.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67704.1); similar to Os04g0671800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054221.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.0711700573116096 -0.821027967654074 0.429251544706177 1 -0.279654506246738 17.3345292653656 -0.0711700573116096 0.0507831011063204
AT1G06100_at 1.78093162058915 2.05581340904265 1.99995244561782 2.09447067746302 1.70534559654718 2.02103463831070 2.11504435473313 2.01484639126245 2.23075684636238 2.12130002399838 2.08089529430887 2.40955248559417 2.35783033782869 2.49648910637035 2.31096450238814 1.99095987288377 2.59982371494892 2.29884278843263 2.03363770445205 0.238004773533058 0.234780656836554 0.23935793160558 0.242730455503237 0.237171718500934 0.241629866420628 0.232536996818839 0.235414259079605 0.232536996818839 0.237106522914317 0.239177357053790 0.235605055686076 0.232536996818839 0.232536996818839 0.241912730405406 0.241133624352695 0.234633260150004 0.232536996818839 0.242738563992155 1 0|1 /|+ 1852015 1852994 1852538.778 1851529 1853018 + gene protein_coding_gene FALSE TRUE AT1G06100.1 fatty acid desaturase family protein Identical to Delta-9 desaturase-like 2 protein (EC 1.14.19.-) [Arabidopsis Thaliana] (GB:Q9LND8); similar to fatty acid desaturase family protein [Arabidopsis thaliana] (TAIR:AT1G06090.1); similar to desaturase delta 9 [Picea glauca] (GB:AAM12238.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Acyl-CoA desaturase; (InterPro:IPR012196) 0.0765734000756719 0.820764901820006 0.42939509872272 1 -0.279859548175760 4.19679720225345 0.0765734000756719 0.0762605578858494
AT4G09150_at 8.3958809422921 8.74303402750486 8.22234809238414 8.31425660376245 9.03942309853456 8.70122948381666 8.39034885612278 8.37561198260115 8.40528618678045 8.53956275971715 8.69582314745082 8.92134756658647 8.43404546004033 8.74910207290905 8.2879407038031 8.89710689525149 7.89744742976727 8.06363360506422 8.34081288594206 0.147309936657102 0.143095103221292 0.149840123140799 0.150314271021395 0.149982212720534 0.154386661312664 0.149729677744571 0.153907593275064 0.167647023566346 0.151413379125486 0.145634181991474 0.143318153776484 0.153021139905431 0.153954507064415 0.152562421465955 0.147053476305095 0.165205726009126 0.153148049918386 0.145792157248354 4 4|0 +|/ 5832890 5833416 5833209.2 5828622 5833657 + gene protein_coding_gene FALSE TRUE AT4G09150.1 T-complex protein 11 similar to T-complex protein 11 [Arabidopsis thaliana] (TAIR:AT1G22930.1); similar to OJ000114_01.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE03125.3); similar to Os02g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047132.1); similar to H0525C06.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66841.1); contains InterPro domain T-complex 11; (InterPro:IPR008862); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081) 0.078923641728386 0.820723555700234 0.429417664040274 1 -0.279891769439466 16.9836965380052 0.078923641728386 0.085404630631787
AT3G53840_at 2.16768803315800 1.87759520244354 2.24431387986394 2.30905160818711 2.03372459988904 2.18177295143398 1.9577390801286 2.33735983635684 2.60216424375182 2.33139002713087 2.87038017870963 2.21336944765534 2.40274139996021 2.12667915463195 2.00353921089121 1.82479582644611 2.58717603159451 2.06310265115738 1.69586355080334 0.201261278290486 0.201054332967654 0.205791912629530 0.201754011673668 0.205403583847024 0.204895775599058 0.204908989927948 0.207357649129897 0.202499895725410 0.207151652987449 0.20591606531165 0.203815983071830 0.207647863249070 0.205385575680272 0.203312485142288 0.204573591378454 0.208329290490652 0.210473082498226 0.210762014334166 3 3 + 19958125 19958631 19958333.182 19956549 19958697 + gene protein_coding_gene FALSE TRUE AT3G53840.1 protein kinase family protein Identical to Putative wall-associated receptor kinase-like 15 precursor (EC 2.7.11.-) (WAKL15) [Arabidopsis Thaliana] (GB:Q9M342); similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G02070.1); similar to Os05g0318100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055181.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44115.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0793936344452766 0.820344095412117 0.429624797438184 1 -0.280187418679353 4.37429511302903 0.0793936344452766 0.0872811721092673
AT3G44440_at 4.84599133207955 4.51908722758352 4.8537629672467 5.11498786421395 4.53085735781494 4.96260991800622 4.35869715158037 4.81135290555163 5.42125019903984 5.2055775617141 5.62351999428631 5.36802932392434 4.934179133155 5.40385671522039 5.17190282190641 4.85840795594874 5.59406044987747 5.33014967319307 5.36816324138836 0.172709608325085 0.169078367071189 0.173057053259388 0.172471524185708 0.178195169225542 0.174730057742266 0.173853403825411 0.168606282022121 0.174861583453991 0.173988437529680 0.171825749281209 0.171955337545533 0.168616569749835 0.168502308105714 0.170120283317191 0.172440218010232 0.168502308105714 0.171841659097362 0.168764182828044 3 3|0 +|/ 16081981 16082188 16082052.3 16081969 16082243 + gene protein_coding_gene FALSE TRUE AT3G44440.1 unknown protein 0.092810981839943 0.820283351461347 0.429657961481622 1 -0.280234735066136 10.0582568034195 0.092810981839943 0.130241570618749
AT1G48830_at 10.2832576282563 10.5546826977953 10.3440503924781 10.3782292688273 10.4321092741587 10.1556453876524 10.7650737208984 10.5922038119240 9.7950455838128 10.2972102768522 10.5278299723713 10.8447270404904 10.3686816530024 10.1773069383676 10.9614664026797 10.4085484598609 10.2693610339499 10.2490637047757 10.2161612650522 0.097539970294286 0.0969929787544604 0.0996473588376135 0.100001881689674 0.0954532565465569 0.104574509552482 0.0954532565465569 0.100052058398853 0.107973392576667 0.101499570771035 0.096490454836192 0.0954532565465569 0.0954532565465569 0.102232691490998 0.0981899420874756 0.0955272373927112 0.101133801394582 0.106474016314482 0.0959238701444033 1 0|1 /|- 18063524 18064167 18063740 18063304 18064970 - gene protein_coding_gene FALSE TRUE AT1G48830.1|AT1G48830.2 40S ribosomal protein S7 (RPS7A) Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [Solanum tuberosum] (GB:ABA40437.1); contains InterPro domain Ribosomal protein S7E; (InterPro:IPR000554) 0.075885779087748 0.820184839863997 0.429711748933603 1 -0.280311463975782 20.7274959523786 0.075885779087748 0.0736562711999288
AT1G58430_at 0.422185968568505 0.00704100562851175 0.305004707826104 0.573802556528971 0.486849931758264 0.134942653590343 0.860177180365601 0.6847040987291 0.332919090798641 0.453388143267842 0.514156557566497 0.19443987912975 0.217608730664875 0.359831886671601 0.243374372677635 0.436926298853843 0.743654959417597 0.0285183933216738 0.400452494070191 0.186375840110309 0.187627537204348 0.186965160906282 0.186180223909989 0.187293167790507 0.192580116381665 0.189355056058254 0.188140190147803 0.193143275924338 0.187313304607350 0.188024134906852 0.186180223909989 0.186180223909989 0.188575300372815 0.188873113940303 0.188065977064347 0.188860961846739 0.190525796091554 0.188009120318006 1 1 - 21715349 21716093 21715719.364 21715230 21716768 - gene protein_coding_gene FALSE TRUE AT1G58430.1 RXF26; carboxylic ester hydrolase Encodes an anther-specific proline-rich protein. similar to carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT2G24560.1); similar to Os01g0827700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044683.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88960.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0858248960773164 -0.819753960341548 0.42994706219958 1 -0.280646973547851 0.80328874329117 -0.0858248960773164 0.109343594575429
AT2G41020_at 3.54452887781809 3.28445485893173 3.69648822426441 3.48249336712715 4.04686267354357 3.75297521973539 4.19207407943988 3.8328706485012 4.01706005030004 3.43099188586543 3.68506467971719 3.41764487066116 3.9884141358486 3.84120095290871 3.73357529724612 3.80689821427884 3.88827394214117 3.81501745794003 3.4655957680544 0.168278194421013 0.169968651438236 0.169713972190782 0.173617051920884 0.171440492823031 0.174775983666420 0.171741750833383 0.169925605690457 0.175215041978745 0.170523230033703 0.171960812015008 0.167780125928323 0.170555778694715 0.168925975290061 0.174631478668522 0.167550188200327 0.172473155608130 0.167034534694141 0.167339724025583 2 2|0 +|/ 17125336 17127850 17126543.882 17124341 17128197 + gene protein_coding_gene FALSE TRUE AT2G41020.1|AT2G41020.2 WW domain-containing protein similar to putative poly-glutamine tract-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82402.1); similar to Os01g0916300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045193.1); similar to putative poly-glutamine tract-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82403.1); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) 0.0826756903821703 0.819164981568842 0.430268855418014 1 -0.281105339517683 7.43404037462818 0.0826756903821703 0.099235832802052
AT2G13500_at -0.198757497421108 0.419516647468454 0.295006171186856 0.375866564447425 0.266537942805546 0.419448267734876 0.534079884329338 0.347800816501341 0.4234657812972 -0.0771974141821442 0.0465620367213372 0.541847077984716 0.313325621313354 -0.305642871525258 0.153213212822622 -0.154806823030996 0.773077243588651 0.540719370730465 0.03333262387448 0.195463801402173 0.194415229636368 0.194188983092477 0.207549639994362 0.189739014091241 0.193885852677594 0.189401861681591 0.191372025014761 0.207450810140735 0.196230306761433 0.188868035672107 0.193428894825978 0.205684661869086 0.197469855423935 0.18937866757429 0.193244494431656 0.211477175387056 0.204890224775705 0.192445553243783 2 2|0 +|/ 5635462 5636079 5635711.5 5635018 5636181 + gene protein_coding_gene FALSE TRUE AT2G13500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17920.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) 0.0877789843683012 0.819046137468432 0.430333806199739 1 -0.281197793627106 0.489972610750986 0.0877789843683012 0.115685817003418
AT1G08430_at 1.00531145791669 1.29865660284303 1.4549276845677 1.42117993558888 0.952534572696778 1.16986340706693 1.11264263226746 1.35718959673126 1.48392864231793 0.8844911523567 1.09622333168299 1.15402768768078 1.24144805236320 1.38823636075802 1.20941790262324 1.07970192864495 1.26765280887454 1.26766488768127 0.98080954399371 0.198024846431867 0.196433559033893 0.201926438799445 0.192308632919745 0.19904861139954 0.200663442024361 0.191119488819675 0.196676360381809 0.19522327431578 0.193376165401672 0.193377655170767 0.196446321330401 0.195242401736082 0.191935931409643 0.193020686049198 0.191642986915969 0.195470028560600 0.196269720841512 0.194455405595667 1 0|1 /|+ 2660547 2660904 2660696.3 2658715 2661026 + gene protein_coding_gene FALSE TRUE AT1G08430.1 ALMT1/ATALMT1 (AL-ACTIVATED MALATE TRANSPORTER 1); malate transporter Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08440.1); similar to putative aluminum activated malate transporter [Brassica napus] (GB:BAE97281.1); similar to putative aluminum activated malate transporter [Brassica napus] (GB:BAE97280.1); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.0764065840114875 0.818960060624599 0.430380853052261 1 -0.281264749301837 2.38626643600721 0.0764065840114875 0.076266924930644
AT3G15990_at 1.78702040057232 2.31445682886892 2.94209645414343 2.67240340282842 1.53877212728575 1.71386406569713 3.00884705430569 2.89873860210317 2.23788636369287 2.72234729854188 2.47465722498472 2.19382175242168 2.47817240501199 2.61746580137321 1.91049444813597 2.35356693350758 2.89285498880775 3.10624181066049 2.20655723963156 0.228682333401653 0.220669903773478 0.231021171099950 0.22605288998372 0.221212333111007 0.223695533019801 0.224465859965079 0.227168381263679 0.236795002702348 0.226353354587813 0.225879221689259 0.222824085654853 0.220669903773478 0.22357024313919 0.221289308591822 0.226417612343983 0.227736736070046 0.226692965964531 0.233669349532146 3 3|0 +|/ 5429766 5430593 5430086.444 5426993 5430886 + gene protein_coding_gene FALSE TRUE AT3G15990.1 SULTR3;4 (SULTR3;4); sulfate transporter Encodes sulfate transporter Sultr3;4. Identical to Probable sulfate transporter 3.4 (SULTR3;4) [Arabidopsis Thaliana] (GB:Q9LW86); similar to AST91 (SULFATE TRANSPORTER 91), sulfate transporter [Arabidopsis thaliana] (TAIR:AT1G23090.1); similar to SULTR3,2 (SULFATE TRANSPORTER 3,2), sulfate transporter [Arabidopsis thaliana] (TAIR:AT4G02700.1); similar to SULTR3,1 (SULFATE TRANSPORTER 1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G51895.1); similar to plasma membrane sulphate transporter [Brassica oleracea var. acephala] (GB:CAG28416.1); similar to sulphate transporter protein [Sporobolus stapfianus] (GB:CAA65536.1); similar to Sulphate transporter [Medicago truncatula] (GB:ABE80289.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -0.0855012944915102 -0.81893744744639 0.430393213258724 1 -0.281282338151868 4.80569472759312 -0.0855012944915102 0.108584677242064
AT3G54010_at 8.94345492225419 9.06053230476922 8.80489481627411 8.69165345430747 8.40475471123441 8.42288828213134 7.68292445459828 7.8959761728057 8.52081851932786 8.63805996526868 8.51435255243845 8.38469598678134 8.05877483026079 8.39900062359733 8.21804256102167 8.22654188900152 8.14710878086463 8.3717354329949 8.68856079962164 0.145900179229578 0.148025322515391 0.142407652112956 0.149607208934124 0.136168038117415 0.147748256286204 0.144928118641330 0.141593796338168 0.143661907286468 0.136408478872298 0.138154787817392 0.141482013324496 0.142855665120506 0.142419784310032 0.145148507796404 0.138081227350851 0.139922703042593 0.144659773681751 0.139132736643855 3 3 + 20015178 20016006 20015698.364 20011839 20016161 + gene protein_coding_gene FALSE TRUE AT3G54010.1|AT3G54010.2 PAS1 (PASTICCINO 1); FK506 binding / peptidyl-prolyl cis-trans isomerase Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced. Identical to Peptidyl-prolyl isomerase PASTICCINO1 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (PAS1) [Arabidopsis Thaliana] (GB:Q7DMA9;GB:O64403;GB:Q93ZT7;GB:Q9M326); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to Os03g0367000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050182.1); similar to Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] (GB:ABE81489.1); similar to Peptidylprolyl isomerase, FKBP-type; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85899.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|Identical to Peptidyl-prolyl isomerase PASTICCINO1 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (PAS1) [Arabidopsis Thaliana] (GB:Q7DMA9;GB:O64403;GB:Q93ZT7;GB:Q9M326); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to Os03g0367000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050182.1); similar to Peptidylprolyl isomerase, FKBP-type; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85899.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0702278301196617 -0.818513373973865 0.430625052483434 1 -0.281612109783225 16.9413072282266 -0.0702278301196617 0.0465161731698249
AT1G49900_at 2.02134629118481 1.44307804276874 1.22796072319004 1.55971900826755 1.21012150502842 1.65471689107077 1.38193179362566 1.27669774669126 1.84284297433971 2.19607161355219 1.65260051390877 1.98458249907559 1.67737729403848 1.89063961205865 2.02754164635116 1.49836339940491 2.10022639926664 2.22588774252252 1.83018875585800 0.199320044417250 0.205419577086936 0.201227325066449 0.199034915591715 0.201823700445056 0.210161860249863 0.198750107559527 0.21635922733213 0.202849917240935 0.203497991600308 0.217407871627102 0.208484877675937 0.203126294389470 0.198750107559527 0.208060483700396 0.214799566732428 0.198750107559527 0.209047121117629 0.210828535579435 1 1 - 18477898 18478295 18478126.909 18477576 18481311 - gene protein_coding_gene FALSE TRUE AT1G49900.1 zinc finger (C2H2 type) family protein similar to AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G19580.1); similar to osmotic stress-induced zinc-finger protein [Nicotiana tabacum] (GB:AAC06243.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0959246648000237 -0.817833569447332 0.430996871547398 1 -0.282140433283247 3.39120658501756 -0.0959246648000237 0.139863823008470
AT3G19360_at 2.82179118296323 3.3002096411034 3.24446798901603 3.50994522291305 2.93158754521986 3.28558594615444 3.38966231493982 3.20736350226198 3.04196074729812 3.10660600031905 2.81644628969995 3.72528573966444 2.78575424992039 2.67838626049274 3.35651109933118 3.04130127868476 2.84291137012489 3.14347560261034 2.65847940826767 0.182905823192683 0.194630309606656 0.185389122726487 0.197252678284634 0.183276420592098 0.190500069054195 0.183751540723265 0.204734586991551 0.182905823192683 0.188832663578519 0.192291967598618 0.184110422287359 0.192763618929456 0.185011985932527 0.19179802182323 0.186541217096797 0.187093109135334 0.188776371183846 0.186510960332773 3 3|0 +|/ 6708242 6708817 6708495.3 6707247 6709034 + gene protein_coding_gene FALSE TRUE AT3G19360.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G32360.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE86497.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.0881084749316065 0.817809938075828 0.431009800551059 1 -0.282158791959567 6.20354718721033 0.0881084749316065 0.117104456569615
AT3G30190_at 0.712853232428877 1.00589306884233 0.751402370395306 1.03666523301186 0.504973283629395 0.962183701605926 0.838273775660631 0.761164208325279 1.31834963530260 1.30650148359863 1.12724047068665 1.31724349375666 1.11997095578098 0.771965932099234 0.896574974119275 1.39581772326417 1.33546501356945 1.39533520713424 1.34705064767657 0.158682898615071 0.160341426520705 0.167262910213281 0.168005640658727 0.163393203812449 0.159153834512152 0.159767963581678 0.161341631359030 0.164369447732200 0.170920818392638 0.162961636775925 0.161436116319103 0.159813858676229 0.161539058297396 0.173465473466329 0.165735747922004 0.170647035787145 0.172013549438124 0.169807435515653 3 3|0 +|/ 11824192 11824665 11824512.2 11823753 11824820 + gene protein_coding_gene FALSE TRUE AT3G30190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24370.1); similar to conserved hypothetical protein [Asparagus officinalis] (GB:ABB55318.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966) -0.0848777291891298 -0.817715083141693 0.431061699397137 1 -0.282232477932940 2.06863559765108 -0.0848777291891298 0.106991246833791
AT1G65570_at 1.00717679345950 0.612079597896833 0.88776629902249 0.975313467126983 1.16913977308086 1.19839443903881 1.13835355597777 0.932277200042825 0.990598123571442 0.765908389016916 1.17775616255429 0.82287500712019 0.447735783426051 0.727245861215494 1.05140171277250 0.878275503806514 0.858157278481772 0.489925797293297 0.607622600601573 0.180760742482992 0.175807327961401 0.180186920842277 0.181834941872659 0.175077242750106 0.175077242750106 0.175077242750106 0.175077242750106 0.188714448544733 0.185669563377002 0.181848685072684 0.178535236677959 0.185718743643272 0.176186229785836 0.181250001155786 0.175077242750106 0.184135563047349 0.192104883275022 0.180143445073148 1 1|0 -|/ 24377802 24378531 24378245.1 24377761 24379509 - gene protein_coding_gene FALSE TRUE AT1G65570.1 polygalacturonase, putative / pectinase, putative similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT3G59850.1); similar to polygalacturonase [Lycopersicon esculentum] (GB:AAC28947.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.0769051541634194 0.817678762268185 0.431081573064681 1 -0.282260691025344 1.78741997873763 0.0769051541634194 0.0787521561578817
AT4G01150_at 12.9568174374315 12.9263981429067 12.8519201662704 12.6775203441890 12.9357731351366 12.9123385666192 13.2906001792399 13.3832515123238 13.5823341327051 13.5807402712100 14.0739949104336 14.1618177832945 13.9026085548141 14.0201290122273 14.0493102084057 13.9315384302971 13.6303684168179 14.0692996407090 13.4811910226443 0.0766649228444745 0.067891986059106 0.0729573778810757 0.073112981678097 0.067891986059106 0.0727803969843284 0.0683172145898049 0.0720447120649789 0.0787022875225473 0.0707450132724071 0.0719521697983225 0.0679641178270173 0.0696005731529704 0.0726205803879172 0.0732994303769261 0.0692677717391922 0.0746387723375111 0.0705154083112295 0.0710315575866673 4 4|0 +|/ 493697 494479 494134.7 493548 494850 + gene protein_coding_gene FALSE TRUE AT4G01150.1 similar to threonine endopeptidase [Arabidopsis thaliana] (TAIR:AT4G38100.1); similar to unknown (GB:AAB00107.1) 0.0684580645916886 0.817548637114557 0.431152778540329 1 -0.282361759792307 26.755813358087 0.0684580645916886 0.0348154329767688
AT1G57870_at 7.84302105519134 7.9057177995599 7.6299704863999 7.50540063810301 8.3837546916211 7.90843654787724 7.59507110163766 7.73179688824576 7.66422507837929 7.41946937512158 7.69864833417575 7.48193913361492 7.56240324479706 7.67786443630227 7.19929335514964 7.5983863522635 7.36572425463501 7.56981233453071 7.26062541646287 0.184240164894543 0.168715285474591 0.186487251727459 0.175537106236863 0.170508754225978 0.181433281187571 0.174992608427778 0.172589567212098 0.180988518800744 0.17819280705815 0.169664180214865 0.169376700662515 0.169885328493277 0.185758836297331 0.184834099678020 0.169113883638979 0.173526492962211 0.166207506913147 0.171228024058901 1 1 - 21435024 21436481 21435655.545 21434783 21439767 - gene protein_coding_gene FALSE TRUE AT1G57870.1 shaggy-related protein kinase kappa, putative / ASK-kappa, putative Identical to Shaggy-related protein kinase delta (EC 2.7.11.1) (ASK-delta) (ASK4) [Arabidopsis Thaliana] (GB:Q9FVS6); similar to shaggy-related protein kinase kappa / ASK-kappa (ASK10) [Arabidopsis thaliana] (TAIR:AT1G09840.6); similar to Protein kinase [Medicago truncatula] (GB:ABE91930.1); similar to GSK-3-like protein MsK4 [Medicago sativa] (GB:AAN63591.1); similar to putative salt-inducible protein kinase [Zea mays] (GB:AAU43771.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0795705936020041 0.817527920519847 0.431164115537932 1 -0.282377849161264 15.2965789280819 0.0795705936020041 0.0889288512511292
AT1G51190_at 1.86752086826241 1.72677673652330 1.48481776463258 1.83748766852104 1.65393273430213 1.94044518837783 1.82519100437345 1.49736049798330 2.02468243033897 2.03906991965577 2.03344472466163 1.91783608756654 2.15753208870831 1.72954291861256 2.13316849550564 1.99159818665109 2.64140649931653 1.83090106448342 1.60310490615018 0.220182493568104 0.220201540534325 0.218878474344169 0.221659109573339 0.235378594907633 0.219490517294705 0.235504033591688 0.224151391395009 0.232446298343792 0.225986311937243 0.224869006689770 0.225850350243134 0.232087683729271 0.218878474344169 0.226033647026076 0.218878474344169 0.220512657197993 0.223791603295073 0.227620068594076 1 1 + 18983438 18983918 18983694.545 18980952 18984286 + gene protein_coding_gene FALSE TRUE AT1G51190.1 PLT2 (PLETHORA 2); transcription factor Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. similar to PLT1 (PLETHORA 1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G20840.1); similar to AP2/EREBP transcription factor BABY BOOM [Medicago truncatula] (GB:AAW82334.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE78008.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0827174508230112 0.817409255412204 0.431229057914255 1 -0.282470002541129 3.7008821463236 0.0827174508230112 0.0999751634308838
AT1G08590_at 2.01003066111042 2.09226356672788 2.4791114438059 2.55218373386651 2.17217721016138 2.16558271113554 2.23068382313158 2.19996870301113 2.39428443452713 2.24084415822193 2.19241182063663 2.26481288592659 2.05959396864069 2.17590871153226 2.27958419668742 2.29261796532583 2.25949473347761 1.76167089878004 2.07266750061366 0.204967752220876 0.203991123502694 0.206499076623954 0.205206338452533 0.197741397128423 0.202467321588749 0.203401230522295 0.202668754581271 0.210735529759267 0.202227655329453 0.197741397128423 0.202484602533966 0.204846912854079 0.198904751779172 0.197741397128423 0.197741397128423 0.202956995404037 0.197741397128423 0.199118608159201 1 1 + 2721356 2721892 2721593.182 2718781 2722224 + gene protein_coding_gene FALSE TRUE AT1G08590.1 CLAVATA1 receptor kinase (CLV1) similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G28650.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G61480.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to Protein kinase; Actin-binding, actinin-type [Medicago truncatula] (GB:ABE92015.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17351.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0669284763760294 0.817040376355714 0.431430977364440 1 -0.282756393189243 4.43609719599219 0.0669284763760294 0.0197984794086561
AT4G27990_at 9.4674119049057 9.78147987013781 9.80912387737736 9.93766098647209 10.1979163407442 9.71273647133533 9.92363438255318 9.92384790610757 9.68521861153852 9.521159485371 9.615261678593 9.13421251546188 9.73373683983158 9.7068391634078 9.3439469992268 9.8375838289168 9.6119591116242 9.62639089454885 9.4428659142411 0.0971457752493483 0.0919839728086607 0.0984983190992414 0.0919839728086607 0.0979160061959246 0.104626217359644 0.0996587966881593 0.0923609471968386 0.102889915808034 0.095368139001923 0.0936744831435429 0.0953012082256255 0.106887125831266 0.0992942864318256 0.101120090823163 0.0964252383300357 0.0967191504027897 0.0930792100113276 0.0960245374396497 4 4 - 13924066 13924501 13924235.909 13923779 13924698 - gene protein_coding_gene FALSE TRUE AT4G27990.1 YGGT family protein similar to EMB1990 (EMBRYO DEFECTIVE 1990) [Arabidopsis thaliana] (TAIR:AT3G07430.1); similar to Os07g0185300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059065.1); similar to ycf19 (ISS) [Ostreococcus tauri] (GB:CAL52377.1); contains InterPro domain Protein of unknown function YGGT; (InterPro:IPR003425) 0.0833796391453272 0.816605938307566 0.43166886322724 1 -0.283093537436525 19.4072211587883 0.0833796391453272 0.102462395343014
AT1G01310_at 0.581156152210921 0.4846902893727 0.515964429163672 0.362944017214039 0.380549711760136 0.561176441218078 0.881032040928452 0.571466505049649 0.547203456370504 0.505229492554919 0.435148380354897 0.249934390683169 0.558094671636856 0.340313940200463 0.140174084279366 0.128542295360212 0.525047166672623 0.392896749395389 -0.0894544075898828 0.237911647534400 0.239283095367732 0.238378202903051 0.235653917054516 0.235653917054516 0.235653917054516 0.23651459373945 0.237452167682206 0.235653917054516 0.258914544217864 0.235653917054516 0.244148674889767 0.236456639713406 0.247712380144738 0.236114890504833 0.246407730840471 0.241481798035659 0.239372494502078 0.237211630256782 1 1 + 120413 120909 120641.6 120154 121130 + gene protein_coding_gene FALSE TRUE AT1G01310.1 allergen V5/Tpx-1-related family protein similar to pathogenesis-related protein, putative [Arabidopsis thaliana] (TAIR:AT3G09590.1); similar to pathogenisis-related protein 1.2 [Triticum aestivum] (GB:CAA07474.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.0745757421702123 -0.81658425674392 0.431680737707325 1 -0.283110359230492 0.876003351832065 -0.0745757421702123 0.0694761663644494
AT2G20890_at 11.2287731913501 11.4005180106100 11.1061365436240 10.9703096965282 11.5568098360972 11.1684640633944 11.7545875184271 11.8714115172138 11.9615693249668 11.8473734321777 12.2000556178516 12.3646883556275 11.7941981763587 12.0865433392667 12.2056026715173 12.1050143833270 11.5685981346531 12.0564522882574 11.7060731522720 0.0905235590499294 0.086984402824346 0.0837832860706554 0.0862662330208464 0.086801539508871 0.0872429291045356 0.0877740228451522 0.0876754895438203 0.087216554150689 0.083305375195633 0.083305375195633 0.0837454333130095 0.0886177974905662 0.0912730343594955 0.087809269716304 0.083305375195633 0.0985542107478857 0.084133426850413 0.083305375195633 2 2|0 +|/ 8995290 8996223 8995688.3 8994747 8996494 + gene protein_coding_gene FALSE TRUE AT2G20890.1 PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane?delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. Identical to Protein THYLAKOID FORMATION1, chloroplast precursor (THF1) [Arabidopsis Thaliana] (GB:Q9SKT0;GB:Q8LB69); similar to Protein THYLAKOID FORMATION1, chloroplast precursor (GB:Q7XAB8) -0.0770435200519874 -0.81645360450798 0.43175229742861 1 -0.283211718408978 23.3251176758204 -0.0770435200519874 0.0797565185397096
AT4G21490_at 3.37315000686982 3.48278896909490 3.67214251209687 3.87900023789185 3.01725877342414 3.79613729073232 2.79272791877039 3.84498418101459 2.72159904713636 2.87739869730684 2.60098237867325 2.42556128490231 2.66273966017865 3.10557601013659 2.65277826534121 2.88856124228416 3.07737185192455 2.87905908274597 2.62402440714464 0.252960703631542 0.260554597202585 0.252958394723171 0.26870985938626 0.251084961869142 0.264679279000000 0.246458414547252 0.257590576247652 0.26395545592074 0.246458414547252 0.254083775249075 0.246458414547252 0.249210472926709 0.257609430580749 0.257130271137309 0.250714664439896 0.25094874654697 0.258590233668202 0.261184271156020 4 4|0 -|/ 11436522 11437819 11436961.25 11436507 11438969 - gene protein_coding_gene FALSE TRUE AT4G21490.1 pyridine nucleotide-disulphide oxidoreductase family protein similar to NDB1 (NAD(P)H DEHYDROGENASE B1), NADH dehydrogenase/ disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G28220.1); similar to NDB4 (NAD(P)H DEHYDROGENASE B4), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G20800.1); similar to NDB2 (NAD(P)H DEHYDROGENASE B2), disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05020.1); similar to Os05g0331200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055220.1); similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand [Medicago truncatula] (GB:ABD32606.1); similar to external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum] (GB:CAB52797.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.131646636379794 0.81584188757046 0.432087446249345 1 -0.283686095602517 6.24606678917983 0.131646636379794 0.230150068679862
AT4G15720_at 1.64868383770858 2.17581329530377 2.00502831993313 1.90481819660867 1.734488995665 2.41425437266269 1.87074024645307 1.83017236322256 1.96790547742580 1.99381136122466 1.53611255891755 1.39641249121586 1.33054125340449 1.73841333370371 1.5761719756013 1.35715785086367 1.86877176754148 1.49115501486926 1.64488283666161 0.208188778950459 0.227952442144048 0.208188778950459 0.209652465528510 0.208188778950459 0.21157307061787 0.212938816635164 0.218337164229319 0.218710751950375 0.216557147640422 0.213223875071318 0.208188778950459 0.210185971248603 0.211482913407829 0.215098353210001 0.208188778950459 0.213060115255102 0.212712341765995 0.209646652965803 4 4 + 8950780 8951385 8951128.091 8949458 8951538 + gene protein_coding_gene FALSE TRUE AT4G15720.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to Os12g0163600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066232.1); similar to hypothetical protein MtrDRAFT_AC149805g4v1 [Medicago truncatula] (GB:ABE88408.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0993647460636567 -0.81564613670614 0.432194731022732 1 -0.283837831652005 3.65085424804569 -0.0993647460636567 0.150032929806892
AT3G23770_at 0.580172950299401 0.610331288568109 0.395334357803563 0.90232460818566 0.364100611367719 0.94084509701356 1.09181758088256 0.78910757742228 1.44215221325021 0.71443741617551 1.06101377258976 0.684145893762535 0.425894136315373 1.26756581824613 0.676464285985495 0.514243140568264 1.33984381203684 0.812874212137926 0.615607516571427 0.208413222793990 0.211172556504074 0.203644106526492 0.205633350828482 0.205638472783509 0.203739210044857 0.202100336572433 0.212896843528185 0.217143614828757 0.208345570822405 0.212931006991810 0.201099683105747 0.208831719146854 0.201939801975932 0.202748972618020 0.204407530148769 0.211462807571849 0.211749033046907 0.203976830373929 3 3 + 8566555 8567171 8566806.545 8565501 8567503 + gene protein_coding_gene FALSE TRUE AT3G23770.1 glycosyl hydrolase family 17 protein similar to MEE48 (maternal effect embryo arrest 48), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT4G14080.1); similar to beta-1,3-glucanase homologue [Brassica napus] (GB:CAA49513.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.0967581310387756 -0.815524646383193 0.432261324839185 1 -0.283931988690981 1.59516493358669 -0.0967581310387756 0.142936886509174
AT2G06020_at 0.565332409700289 0.899686793140776 0.610194027940449 1.21193647409228 0.731320549434463 0.701073987955325 0.638141253326065 1.26017294276699 1.43430274702996 1.26746222074433 1.18309525127707 1.16714990875536 0.884979022834095 1.12680766003366 0.747515138380145 0.74244182868793 1.02238251125097 0.842269493634465 0.730263799675461 0.227099253470427 0.227948749256012 0.229838678416182 0.230465564439858 0.229619409671537 0.225840289551930 0.226565070684292 0.225840289551930 0.234917267457784 0.225840289551930 0.230314876607186 0.235890730730731 0.232805684554579 0.228816137887967 0.225840289551930 0.225840289551930 0.233044987537116 0.239185012145267 0.232689177827872 2 0|2 /|+ 2344053 2346166 2345699.75 2342532 2346204 + gene protein_coding_gene FALSE TRUE AT2G06020.1 myb family transcription factor similar to UNE16 (unfertilized embryo sac 16) [Arabidopsis thaliana] (TAIR:AT4G13640.2); similar to phosphate starvation response regulator-like [Oryza sativa (japonica cultivar-group)] (GB:BAD07516.1); similar to Os02g0700300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047838.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.103315788585553 -0.815435290362406 0.432310308863355 1 -0.284001233265065 1.88152715029789 -0.103315788585553 0.160645172836137
AT1G60240_at 1.32671832304919 0.786069792805179 0.930011719922737 0.881070841850397 0.862059221314416 1.13421035629286 1.03975407748391 1.34318377136312 1.44318576479220 1.11289095416320 1.33434408167289 1.03408713933033 1.49600469351321 1.29743883022427 1.72920965445211 1.34953944428810 0.831530634682755 1.47876340433341 1.41198340064885 0.192688204487492 0.192714081387935 0.193408981971782 0.192744040266991 0.194083098725580 0.193901642687208 0.191269740575749 0.193389670201174 0.198632917218381 0.196654315671834 0.204724839000878 0.196172448835847 0.203245385408495 0.194541254848395 0.193102393060942 0.198068096697314 0.195079180403041 0.193763963023418 0.197003573191450 1 1 - 22219089 22219495 22219310.727 22218862 22219695 - gene protein_coding_gene FALSE TRUE AT1G60240.1 apical meristem formation protein-related similar to apical meristem formation protein-related [Arabidopsis thaliana] (TAIR:AT1G60300.1); similar to apical meristem formation protein-related [Arabidopsis thaliana] (TAIR:AT1G60340.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.0879577137764337 -0.815281727624514 0.432394498909543 1 -0.284120217961093 2.35866048393367 -0.0879577137764337 0.117477462547018
AT3G50400_at 1.13602316194868 1.215806277846 1.46639115127912 0.867873070968958 0.701083111392655 1.34612302651189 0.621341629033292 1.06336930254101 1.30588625651105 1.79601054944367 1.03218864648559 1.08635210714802 1.58092521717816 0.807864170611613 1.16502483821988 1.33792545479631 1.36677905507665 1.29831197179411 1.42854578980475 0.231967948781929 0.237513159829627 0.254873516997745 0.234237083186377 0.233546292788127 0.231967948781929 0.231967948781929 0.24692714399817 0.235858484283917 0.234766945048595 0.233338240772174 0.232380387878510 0.233262695829825 0.232095426380875 0.231967948781929 0.232892907451159 0.237014380222977 0.241585436738173 0.234790989635488 3 3|0 +|/ 18716632 18717364 18717019.1 18715746 18717551 + gene protein_coding_gene FALSE TRUE AT3G50400.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G23540.1); similar to H0404F02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66728.1); similar to Os03g0310000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049914.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.107246801030061 -0.815109202748721 0.432489097797281 1 -0.284253871632964 2.41203582373201 -0.107246801030061 0.170970142634822
AT1G49810_at 2.23193411266703 2.45765829768148 2.71466890901709 2.32701302917072 2.22411785726886 2.63409381761404 2.46028750868961 2.10069619321935 2.32568865613415 2.29648609626535 2.11219928689903 2.40234412721753 2.25517565669718 2.76200278373208 2.59230732788696 2.23083856947989 2.82257520587407 1.88489734674303 2.47645148618223 0.211972837808867 0.211758428347183 0.211758428347183 0.212364641868635 0.214881817504339 0.218301492964023 0.215442352465488 0.211758428347183 0.221647650052148 0.222734756504125 0.211758428347183 0.211758428347183 0.217327225444893 0.215219235682912 0.212525329371162 0.216627872481791 0.211833423534711 0.221026538154389 0.219303414944345 1 1 - 18443701 18444523 18444097.455 18443681 18445905 - gene protein_coding_gene FALSE TRUE AT1G49810.1 ATNHD2 (Arabidopsis thaliana Na/H antiporter 2); sodium:hydrogen antiporter member of Na+/H+ antiporter-Putative family similar to ATNHD1 (Arabidopsis thaliana Na/H antiporter 1), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT3G19490.1); similar to Na+/H+ antiporter precursor [Populus euphratica] (GB:CAD91128.1); contains InterPro domain Citrate transporter; (InterPro:IPR004680) 0.0894565835378112 0.814744423180142 0.432689158906858 1 -0.284536381916989 4.76830935779609 0.0894565835378112 0.122198491062341
AT1G26540_at 1.44909522534428 1.34578153797255 1.57409624030452 1.39704271146877 1.39310349508115 1.48129027542431 1.54803617423647 1.47950122857853 1.86877152754653 1.75358057138563 1.73921714974776 1.68915456873487 1.96818584394739 1.16439907406695 1.88752810557013 1.68390594125887 1.56522756781427 2.03417449812207 1.95817561372638 0.168961850747038 0.162943112482003 0.165061540238202 0.165576498236983 0.164875021269341 0.170714654999189 0.158577783361903 0.166611419102319 0.158002914169380 0.163173396372812 0.164470943346966 0.158843538076337 0.160016130754094 0.167180705767855 0.159414936635202 0.158002914169380 0.161891432233421 0.170820416226925 0.165048601978574 1 1 - 9167771 9168327 9168094.273 9167576 9170921 - gene protein_coding_gene FALSE TRUE AT1G26540.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G47230.1); similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G03300.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) -0.0689610857624967 -0.814637420541456 0.43274785545474 1 -0.284619231071688 3.24681835998998 -0.0689610857624967 0.0403983935183763
AT3G32180_at 3.15174068558898 2.48268703212033 3.17937857755172 3.07123670959486 1.9289404921111 3.41865638971463 2.94202189623526 2.61433898050282 2.99266823630052 2.86306060944255 3.10630587935629 2.93268979811288 3.1209017719137 3.26698998769122 3.20755472005736 2.9369627896179 3.42873740638828 3.4121905545773 3.0363612810429 0.186173227088181 0.185335038518414 0.182087342905019 0.179636055549911 0.182540904669707 0.183030162540286 0.188745944994111 0.181032702866329 0.179636055549911 0.179636055549911 0.181644111849351 0.180129993397992 0.183211824656394 0.182279512452167 0.185504444905249 0.185837709258996 0.183365987148467 0.181850964100218 0.180534478057283 3 3 - 13166143 13166238 13166193.545 13166126 13166495 - gene protein_coding_gene FALSE TRUE AT3G32180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32160.1) 0.157183732416804 0.81455428269129 0.432793464552147 1 -0.284683595805004 5.91891092329064 0.157183732416804 0.288848763512228
AT1G70820_at 11.2655244438373 11.3218549782395 10.9525604309039 10.9767225688677 11.2862268812297 11.1132491830498 11.2786604718786 11.2271539278932 11.1839251927491 11.6071438802751 11.8253301958192 11.6684289439801 11.6849800648268 11.8198945823485 11.6673607957089 11.7585787663768 11.5547142097714 11.7844189728671 11.3890865842070 0.0703000536526128 0.0681182279240324 0.0702936604821796 0.0704458788327161 0.0686099963868532 0.0722975153773472 0.0730499512721624 0.0720683979969849 0.0703901233688798 0.0681182279240324 0.0688085632331673 0.0688406917710153 0.0699423697190794 0.0699709497391656 0.0702140520543271 0.0681182279240324 0.0703696980946082 0.0681182279240324 0.0706396728359726 1 1|0 +|/ 26710769 26711635 26711280.5 26709180 26711926 + gene protein_coding_gene FALSE TRUE AT1G70820.1 phosphoglucomutase, putative / glucose phosphomutase, putative similar to phosphoglucosamine mutase family protein [Arabidopsis thaliana] (TAIR:AT5G17530.2); similar to Os06g0476200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057639.1); similar to phosphoglucomutase [Spinacia oleracea] (GB:CAA53507.1); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; (InterPro:IPR005845); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; (InterPro:IPR005844); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; (InterPro:IPR005846); contains InterPro domain Phosphoglucomutase/phosphomannomutase; (InterPro:IPR005841) 0.067984703967952 0.81454920049177 0.432796252729902 1 -0.284687530221097 22.7346683785072 0.067984703967952 0.0329854837396998
AT4G09760_at 10.0225019488315 10.1313990373520 10.4642514888171 10.3930008194619 10.6848352893228 10.4393240202655 10.4891886759731 10.4127697655072 9.69317987651644 10.3186594774642 10.1970690296025 9.68243283894943 10.2407870499149 10.2988794568387 9.26516763766352 10.1662213767739 10.1711217162453 9.5252486881879 10.0897890334012 0.0874286584574678 0.0868063839687864 0.091986467332871 0.093099679368385 0.0918884111202987 0.0946154928413857 0.087932969604881 0.0915409235471962 0.107952108968545 0.089261092620244 0.0869791172178803 0.0874008813322707 0.0902725924912642 0.088847856742655 0.0902976235381826 0.0892617111099107 0.097261164954638 0.099700350185857 0.0890025344121636 4 4|0 -|/ 6148968 6149970 6149410.4 6148755 6151396 - gene protein_coding_gene FALSE TRUE AT4G09760.1|AT4G09760.2|AT4G09760.3 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71697.1); similar to GmCK2p (GB:AAC49375.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575)|similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71697.1); similar to GmCK2p (GB:AAC49375.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Choline/ethanolamine kinase; (InterPro:IPR002573) 0.0704389463478037 0.814423102387886 0.432865436015221 1 -0.284785142957559 20.368279932391 0.0704389463478037 0.0498718401555265
AT4G35725_at 0.418120865143626 0.193831789506946 0.480077332381418 0.660159858406537 0.163984571845124 0.390243532940825 0.414024836767271 0.663107917357571 0.417618230746497 0.255827246585343 0.540951520848496 0.681660277741248 0.44956461310926 0.37117913534507 0.284779569141147 0.0803317565787282 0.506499726177552 0.591612331705241 0.189532284070781 0.173110273305090 0.167521271603267 0.170453800468893 0.167521271603267 0.171672261611893 0.172542849261348 0.170732863364319 0.167521271603267 0.175154484453038 0.171304072218964 0.170935972770583 0.174129522114317 0.171156414376534 0.178258787109425 0.173810081235365 0.174210720292774 0.173291131051755 0.170096393710661 0.177293112293929 4 4|0 -|/ 16930049 16930454 16930205 16929948 16930565 - gene protein_coding_gene FALSE TRUE AT4G35725.1 unknown protein 0.0760040421147958 0.813747693745007 0.433236121086832 1 -0.285307752377393 0.785934648109523 0.0760040421147958 0.0766088592236198
AT1G55430_at 1.24507223243711 1.12446055729112 1.29094256067638 1.21779882969323 0.932171039256061 1.24335507073236 1.16618018139852 1.20110963711584 0.666574407224553 1.71828782880245 1.25501942761872 0.885164522543505 1.12259708740372 1.43217981357619 1.23629102329711 1.68588617277868 1.44405725495755 0.768090550615461 1.6946760264816 0.213720988088946 0.213409389683609 0.21422550018102 0.217057438033072 0.215169615152722 0.216305357862511 0.213409389683609 0.213977412100361 0.228018312603135 0.216843003653842 0.21588216320034 0.213409389683609 0.214854165500399 0.217418622375168 0.213409389683609 0.214488030156732 0.217458201165112 0.216358738451448 0.221468542801396 1 1 - 20701409 20701890 20701639 20701315 20703288 - gene protein_coding_gene FALSE TRUE AT1G55430.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55380.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55390.1); similar to EDA11 (embryo sac development arrest 11) [Arabidopsis thaliana] (TAIR:AT1G55420.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.0721620664375704 -0.813709194432753 0.433257257014772 1 -0.285337530455203 2.47188967312595 -0.0721620664375704 0.0594343261440416
AT1G48060_at 0.792899307982053 0.818563589880005 1.22186441658175 0.97171753155467 0.546130880190329 1.08654719504264 1.30449747178430 0.981014299779668 1.34437039665544 0.639345224340602 0.79483797714055 0.808872713731336 0.45964956891777 0.750673557593195 0.347829587365075 0.632133276798536 0.859406020862034 0.909492575537662 0.575737211650123 0.185043993126300 0.190248936062996 0.186581740258700 0.185859311045037 0.193058961184030 0.194720571053041 0.186812312155203 0.194736803069947 0.194595962881182 0.193852077097946 0.198472565113944 0.188405430532561 0.195092687125715 0.196575323809486 0.192322152982742 0.195703156558529 0.194880319351820 0.196425590534094 0.197545904254585 1 1|0 +|/ 17732426 17733080 17732674.111 17731964 17733117 + gene protein_coding_gene FALSE TRUE AT1G48060.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47730.1); similar to Putative F-Box protein, identical [Solanum demissum] (GB:AAT38720.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0877338479931405 -0.813556364757413 0.433341166456945 1 -0.285455727501712 1.73966076357876 -0.0877338479931405 0.117361594758358
AT3G06470_at 7.12418615677116 7.9112449172885 6.58391007770371 6.71853526241405 7.40352385534336 7.79430047296296 6.81811931269606 7.7730691313397 7.4293069445313 6.14271054408659 7.40395289470336 7.62849068528502 7.36829208750075 7.77382315023862 7.1919362060553 7.03143044555338 5.92060534586575 7.3173825631943 6.42072456913836 0.165643100680323 0.164107884142842 0.167989476413892 0.167693949030504 0.161589111156734 0.180257500647947 0.171930705217460 0.161589111156734 0.168530590284650 0.173995393774603 0.161589111156734 0.163634965549522 0.162236468581835 0.167737903318811 0.168760767410034 0.161589111156734 0.175791565956647 0.161589111156734 0.177177824428329 3 3 + 1984452 1984874 1984647.636 1984174 1985265 + gene protein_coding_gene FALSE TRUE AT3G06470.1 GNS1/SUR4 membrane family protein similar to GNS1/SUR4 membrane family protein [Arabidopsis thaliana] (TAIR:AT3G06460.1); similar to long chain fatty acid elongation enzyme [Gossypium hirsutum] (GB:CAE75664.1); contains InterPro domain GNS1/SUR4 membrane protein; (InterPro:IPR002076) 0.129327178648156 0.812975730123143 0.433660055380639 1 -0.285904607484025 14.2002294107574 0.129327178648156 0.225783018127549
AT3G02780_at 8.33668771101235 8.92957226234724 8.70817557029672 8.77453855624789 8.79383261489498 8.45579403830247 9.11504757021047 9.38794360188135 8.6587838835329 8.89015054528609 8.95318078164718 9.02525381840983 8.71608738366638 8.75244093061223 8.90278461460871 9.11535712633735 8.72424891593517 8.7256839564442 8.81316456516309 0.147662344877217 0.136357118137134 0.145571773403841 0.146079344406808 0.139468767552810 0.150812289886820 0.139091823290343 0.136841442795005 0.139504155624149 0.135179875821612 0.140990652915129 0.136323934362873 0.142690024941987 0.137474465123238 0.139149789637784 0.139110430922363 0.149837543139923 0.146868523566985 0.139531123758385 3 3|0 -|/ 602587 603592 602991.4 602440 604691 - gene protein_coding_gene FALSE TRUE AT3G02780.1 IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. Identical to Isopentenyl-diphosphate Delta-isomerase II (EC 5.3.3.2) (IPP isomerase II) (Isopentenyl pyrophosphate isomerase II) (IPP2) [Arabidopsis Thaliana] (GB:Q42553); similar to IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT5G16440.1); similar to isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Brassica oleracea var. botrytis] (GB:AAF36996.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Isopentenyl-diphosphate delta-isomerase, type 1; (InterPro:IPR011876); contains InterPro domain Isopentenyl-diphosphate delta-isomerase; (InterPro:IPR002667) -0.0911071158985304 -0.812863452013333 0.433721737249601 1 -0.285991375599642 17.6385720017917 -0.0911071158985304 0.127716037310589
AT4G28815_at 2.13845328555703 2.14036269853698 2.89369119118762 2.80460498933009 2.24671263468424 2.65151180733497 2.49190720323948 2.66833520800467 2.97414552527715 2.89331954616500 3.20672646104008 2.95937727302588 2.8565842051654 2.84045394591396 2.49788546657591 2.42628675617998 3.23435368001487 2.74811567533466 3.081893698532 0.296036596102835 0.281669210541763 0.301165136898336 0.281669210541763 0.297447141234984 0.310217447749421 0.281669210541763 0.281669210541763 0.317699223968203 0.281669210541763 0.281669210541763 0.308702336630244 0.295384231265453 0.281669210541763 0.303053270684469 0.310918276568575 0.317893605796743 0.282963153982342 0.316866197695278 4 4 + 14228941 14229357 14229135.5 14228725 14230294 + gene protein_coding_gene FALSE TRUE AT4G28815.1 transcription regulator similar to transcription factor [Arabidopsis thaliana] (TAIR:AT4G28800.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99362.2); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0762344498573259 0.812654224946768 0.433836695120929 1 -0.28615303748353 5.41911863868325 0.0762344498573259 0.0779570844651531
AT3G27510_at 0.983035370935975 0.755378462975639 1.27438013773309 1.11239792970908 0.883068861027197 0.65892399652339 0.979894348668216 0.49916676709813 0.817119764439415 0.711726915694544 0.643068952660796 0.655454717894124 0.867904851946053 0.315562755509968 0.995003400635614 0.417879773485972 0.749710582361809 0.85009488430032 0.56504492380133 0.197718307775872 0.198789073102560 0.202964454192047 0.197718307775872 0.203555105092751 0.202008311034716 0.200219492044117 0.200885516845784 0.202301011393147 0.197718307775872 0.201053243933188 0.21017463396155 0.200311498170281 0.207357135329511 0.197718307775872 0.204635735350953 0.205029386422937 0.210042131361987 0.201614072977425 3 3 - 10189496 10190085 10189834.636 10189458 10191580 - gene protein_coding_gene FALSE TRUE AT3G27510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27500.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42840.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G27473.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.0833475578498006 0.812505736949644 0.433918292682277 1 -0.286267746435543 1.58568016324772 0.0833475578498006 0.103747076532312
AT3G24460_at 1.75320642185883 1.29132052063809 2.66742879483975 2.77654512721071 1.82257894185197 2.21904547921997 6.32761602318939 6.41649690077106 1.66693199203271 2.34306671936226 1.83452112758281 1.80778083720176 3.9440667910416 3.21865383820164 1.49450136846064 5.45736391126934 5.89047668564024 2.75690108973787 1.67241297160855 0.361275010978122 0.347578712710932 0.335654646368625 0.335654646368625 0.335654646368625 0.335654646368625 0.345993378700259 0.351225639190187 0.340567644241397 0.335654646368625 0.335654646368625 0.335654646368625 0.346558079600959 0.336893232860165 0.337079049604505 0.360757711126001 0.366917307459031 0.335654646368625 0.338787984622632 3 3|0 -|/ 8889150 8889698 8889439.375 8885825 8889933 - gene protein_coding_gene FALSE TRUE AT3G24460.1 TMS membrane family protein / tumour differentially expressed (TDE) family protein similar to MEE55 (maternal effect embryo arrest 55) [Arabidopsis thaliana] (TAIR:AT4G13345.1); similar to TMS membrane protein/tumour differentially expressed protein [Medicago truncatula] (GB:ABE91594.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) -0.0846822011797967 -0.812477652653383 0.433933726787175 1 -0.286289439860912 5.75661499310238 -0.0846822011797967 0.108118383491822
AT2G01220_at 7.055230272826 6.83901358929686 7.08097796727238 6.59317537020407 7.35335111639224 6.95481187962046 7.20896002798484 7.09004386235717 6.61766315135151 6.80618191927276 7.13282989132313 7.05066997157164 6.94924551677935 7.25921091715546 6.88642298511532 7.4540173859952 6.70119301076893 6.64721389701308 6.92323000818607 0.144943499848833 0.139293638720492 0.143495436646255 0.144766033788054 0.140924433080704 0.147349116151022 0.144518649742631 0.143305326252992 0.152502008703134 0.142660965752315 0.145066454159192 0.141717456820181 0.137297370965945 0.145162440520905 0.143434037534314 0.140816492867901 0.149955563457679 0.140771280371597 0.152203210290891 2 0|2 /|+ 123498 126141 124985.421 123275 126465 + gene protein_coding_gene FALSE TRUE AT2G01220.1|AT2G01220.2 nucleotidyltransferase similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27610.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82489.1); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.0875046163089421 0.812295350299844 0.434033922326343 1 -0.286430241449152 13.9181749140286 0.0875046163089421 0.117074467318829
AT2G32360_at 2.36464048637244 1.96445220833049 2.53049187063913 2.40683305151542 2.11620137022627 2.35732507357594 2.18480953922287 2.39186541323308 2.39841139942614 2.11061456623017 2.33218185010878 2.00555665587875 1.86428971389214 1.77747317746293 2.41948866136977 2.31981786709876 2.39515075012709 2.06485738510283 1.83408782598905 0.208227263561940 0.197994376987325 0.202437334866947 0.201540462119104 0.200333197834546 0.196289404005444 0.194092770048473 0.193922967003732 0.20387220051271 0.196806295373194 0.203476747861383 0.194102273203829 0.195266290953532 0.196401461795136 0.200736727782191 0.191898990569379 0.196695832789281 0.198696797582816 0.198415693203888 2 2 - 13744296 13744573 13744446.818 13744096 13744623 - gene protein_coding_gene FALSE TRUE AT2G32360.1 ubiquitin family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66540.1); similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT2G04970.1); similar to hypothetical protein B14911_03489 [Bacillus sp. NRRL B-14911] (GB:ZP_01168655.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.0796258367239073 0.81227085250431 0.434047387770112 1 -0.286449160258859 4.42043901239542 0.0796258367239073 0.0909903808467296
AT3G10560_at 1.92594101672147 1.79740481740049 1.86121829389799 1.91744148904079 1.41217662914786 1.88296896795471 1.90758109739439 1.90485091737809 2.07823646115366 1.96839244759576 2.04851858861774 1.79793735230419 2.03074603384206 1.79141106777585 2.31735322859573 1.7349596729778 1.82071375333379 1.62558410265957 1.76261348412094 0.183281865649401 0.184274233997502 0.184280124604894 0.183281865649401 0.18418425182334 0.191991241203721 0.185675807840859 0.186586258852623 0.192268316171567 0.195271806104299 0.183281865649401 0.185234972596628 0.184905217342174 0.187616663520741 0.186465345374060 0.184739194248396 0.183281865649401 0.191925631470949 0.191441360366664 3 3 + 3301072 3301452 3301277 3299898 3301709 + gene protein_coding_gene FALSE TRUE AT3G10560.1 CYP77A7 (cytochrome P450, family 77, subfamily A, polypeptide 7, unfertilized embryo sac 9); oxygen binding member of CYP77A similar to CYP77A6 (cytochrome P450, family 77, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G10570.1); similar to CYP77A4 (cytochrome P450, family 77, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G04660.1); similar to CYP77A9 (cytochrome P450, family 77, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G04630.1); similar to Cytochrome P450 77A3 (GB:O48928); similar to Cytochrome P450 77A2 (CYPLXXVIIA2) (P-450EG5) (GB:P37124); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0780021365783604 -0.812214426954685 0.434078403653651 1 -0.286492733877731 3.74235645660204 -0.0780021365783604 0.0850146747022503
AT4G02930_at 5.86268667111297 5.81816011223438 5.96413952115453 6.16994998802037 4.68849629821732 4.545340038829 5.42867729906559 5.78286878369216 4.74426349067269 4.72583886237454 4.63605005071292 5.321605730913 4.46880070960106 4.9793922526397 5.62484497575348 4.97500762111034 4.64122027294346 4.44214415772461 4.49840802100131 0.233609958323079 0.235335965036408 0.243370924176004 0.236061185699928 0.234824656627035 0.241792271780137 0.232969207530056 0.23343968667805 0.240827957779662 0.232969207530056 0.236642179777497 0.232969207530056 0.236660838316738 0.24499628427993 0.24212574866064 0.232969207530056 0.242687140922269 0.243278641974435 0.235890828096263 4 4|0 -|/ 1295918 1296747 1296204.4 1295409 1298404 - gene protein_coding_gene FALSE TRUE AT4G02930.1 elongation factor Tu, putative / EF-Tu, putative Identical to Elongation factor Tu, mitochondrial precursor (TUFA) [Arabidopsis Thaliana] (GB:Q9ZT91;GB:Q39206); similar to AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b), translation elongation factor [Arabidopsis thaliana] (TAIR:AT4G20360.1); similar to translational elongation factor EF-TuM [Zea mays] (GB:AAG32661.1); similar to Os03g0851100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051912.1); contains InterPro domain Translation elongation factor Tu; (InterPro:IPR004541); contains InterPro domain Elongation factor Tu, C-terminal; (InterPro:IPR004160); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Translation elongation factor, GTP-binding; (InterPro:IPR013004); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.0755768291144995 -0.812092043335738 0.434145680266243 1 -0.286587233310292 10.3036915120946 -0.0755768291144995 0.075489508077955
AT2G01200_at 1.48818655996656 1.39749854656706 1.80309290122635 1.11328078148713 1.45006430332776 0.971013923604066 1.16463880539752 1.12602111637082 1.12918452120223 1.59316373231477 1.24427653172684 1.15918101896091 1.48947798843510 1.61571500365569 1.72143384124081 1.62912125831844 0.667533911719084 1.39564966148875 2.07975574076588 0.384338726223717 0.379556675340245 0.379556675340245 0.396993071724523 0.379556675340245 0.379556675340245 0.379556675340245 0.379556675340245 0.379556675340245 0.427690080721401 0.398890478453754 0.379556675340245 0.390386016048460 0.379556675340245 0.379556675340245 0.379556675340245 0.422362959605882 0.462339857060312 0.416629854587536 2 2 + 118811 119000 118882.667 118016 119341 + gene protein_coding_gene FALSE TRUE AT2G01200.1|AT2G01200.2 IAA32 (indoleacetic acid-induced protein 32, maternal effect embryo arrest 10); transcription factor|IAA32 (indoleacetic acid-induced protein 32, maternal effect embryo arrest 10) Belongs to auxin inducible gene family. Identical to Auxin-responsive protein IAA32 (Indoleacetic acid-induced protein 32) (IAA32) [Arabidopsis Thaliana] (GB:Q8RYC6;GB:Q9ZU47); similar to IAA34 (indoleacetic acid-induced protein 34), transcription factor [Arabidopsis thaliana] (TAIR:AT1G15050.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525)|Identical to Auxin-responsive protein IAA32 (Indoleacetic acid-induced protein 32) (IAA32) [Arabidopsis Thaliana] (GB:Q8RYC6;GB:Q9ZU47); similar to IAA34 (indoleacetic acid-induced protein 34), transcription factor [Arabidopsis thaliana] (TAIR:AT1G15050.1); similar to Os02g0817600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048522.1); similar to Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) (GB:Q59AA1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.0975629795742957 -0.811950812123198 0.434223326316900 1 -0.286696270532840 2.79722460892882 -0.0975629795742957 0.146335669247373
AT2G30370_at 0.551903832064311 0.566465864466668 1.05870076936213 0.813803498688428 0.536608139451252 0.731612509531679 0.593660384222861 0.475092049922944 0.607683539513035 1.14139136792577 1.41379618869416 0.920883392744091 0.867581354080018 0.533457952921159 1.03710518955371 0.805568289970556 0.67578671939773 0.676131036816079 1.13470035770488 0.233178734311778 0.220556164453286 0.222085493480844 0.227579654438084 0.223968349688326 0.220556164453286 0.220556164453286 0.234011296477211 0.225494933577999 0.223506565827235 0.232683071767443 0.231450493718371 0.224540182148797 0.224116976358629 0.236565548496154 0.229162288643122 0.229113277461780 0.224560527624082 0.226866071789844 2 2 - 12948355 12949174 12948606.625 12947654 12949244 - gene protein_coding_gene FALSE TRUE AT2G30370.1 allergen-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14723.1); similar to allergen-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87082.1) 0.0717155201984009 0.811908557763166 0.434246558687057 1 -0.286728889678876 1.57975447458216 0.0717155201984009 0.0579854198298638
AT2G34080_at 1.58451362006588 1.75675697666128 2.0508004510224 1.64063782170248 2.04631303286056 1.78475039240699 1.91315128860587 1.66965630387596 1.92895736719294 1.9779657651407 1.80642703498892 1.91785611816590 1.42948589975865 1.98454217687008 1.89987346397864 2.07412003018053 2.38459336271673 1.88230933814307 1.81837224556435 0.203909437719655 0.204445050128207 0.220947233289979 0.217725124249835 0.210886215369077 0.211238218256773 0.214938479674679 0.207787731977211 0.221204198434304 0.208753831200304 0.216052532792717 0.203498399539726 0.205366315765276 0.209029416352870 0.208721794108196 0.205104884919856 0.209507235645274 0.209623892447216 0.214108473853454 2 0|2 /|- 14400559 14401023 14400808.9 14400260 14401937 - gene protein_coding_gene FALSE TRUE AT2G34080.1 cysteine proteinase, putative similar to peptidase C1A papain family protein [Arabidopsis thaliana] (TAIR:AT1G29090.1); similar to cysteine proteinase precursor [Ipomoea batatas] (GB:AAL14199.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.081787506331756 0.811779913330021 0.434317295258647 1 -0.286828190300805 3.72123884626666 0.081787506331756 0.0987482694573141
AT1G31450_at 1.82536498458425 1.64138956951356 1.40402037913616 1.54585327194959 1.70239758691259 2.13909621314844 1.80989879942472 1.6427545977172 1.94615907287957 2.02956726586130 2.16456303383146 2.11129703820878 1.92773594885008 2.05928704908891 1.99764850907787 1.90012758897083 2.25626602912776 1.75635876658607 1.51682393251059 0.190860239594406 0.191386132581877 0.192154224184176 0.187761057377579 0.187761057377579 0.188979948271929 0.187761057377579 0.196493394433044 0.191404366340411 0.195275017910019 0.194634104713751 0.187761057377579 0.18869337483753 0.196550017086984 0.195710489595985 0.191732866196247 0.198203531546938 0.199851967330412 0.190549214734976 1 1 - 11259859 11260393 11260157.909 11259853 11261190 - gene protein_coding_gene FALSE TRUE AT1G31450.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT2G35615.1); similar to Eukaryotic aspartyl protease, putative [Medicago truncatula] (GB:ABE90750.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.0794001400136671 0.811760009860424 0.434328240082064 1 -0.286843552553749 3.64010221824075 0.0794001400136671 0.090354820927262
AT3G58160_at 2.00084154534618 2.45400291723234 2.34529314212714 1.68001464017498 3.07365054686156 2.57656462643803 3.32906815942866 2.16884490091866 1.68080064437498 2.40609464303811 2.28590717720619 2.06651571747303 2.20119100488227 2.42372612830587 1.88128299875648 2.21068868845614 1.82402024820619 2.06207913282477 2.92404031511956 0.202757223274442 0.202757223274442 0.210379684666503 0.216114085627087 0.202757223274442 0.217678052030665 0.206855344343905 0.204287767338104 0.211873897578258 0.202757223274442 0.205675112961178 0.214034567662659 0.214208241217821 0.212846229930452 0.210283770750446 0.205320496903163 0.219221429015548 0.206850875303811 0.207808959917002 3 3 + 21551824 21552543 21552282.909 21545774 21552854 + gene protein_coding_gene FALSE TRUE AT3G58160.1 XIJ (Myosin-like protein XIJ) Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71529.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71527.1); similar to myosin XI [Nicotiana tabacum] (GB:BAD72949.1); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.143430394497358 -0.81150331541012 0.434469411456312 1 -0.287041649463361 4.68173752041165 -0.143430394497358 0.259071740707749
AT3G32270_at 2.57126906596675 3.21461060136319 3.02602093904287 3.39382308307593 2.72901464509768 3.20571524805228 2.71056573223281 3.24548772641798 2.95406866063059 3.20925138206476 2.86017488944269 2.66742482750289 3.12352406909924 2.90560441431343 2.53862549868359 3.07220586608540 3.09116803673052 2.80589303391185 3.60340065418101 0.198988992803592 0.198438621254655 0.200584967848529 0.205501454869796 0.202861990844565 0.201940514841242 0.204190652330793 0.210722355959087 0.205325297973131 0.198438621254655 0.201315401245992 0.198438621254655 0.203031430670055 0.199793816189780 0.202366053232302 0.199378135438119 0.203216728807638 0.198438621254655 0.215958253554280 3 3|0 +|/ 13225853 13226633 13226148.778 13225812 13226724 + gene protein_coding_gene FALSE TRUE AT3G32270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07310.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.109667894416122 -0.811490135307282 0.434476660787294 1 -0.287051819363404 6.08138895270451 -0.109667894416122 0.178385008770689
AT4G08410_at 2.05584924640222 2.22473830179937 2.60610374017706 2.07946923583641 2.22464743488129 2.26236454208213 2.23245699968251 2.7056404103526 3.27863967264040 3.37680556402624 2.49401119210860 2.62945078353745 3.1018091858748 2.77964089189134 2.80785943033069 2.70122766312021 3.21110274453516 3.54860769451865 2.58001375092535 0.29470657186549 0.289639461081498 0.328159187888928 0.318027352392837 0.289639461081498 0.355663433810574 0.289639461081498 0.309598995708935 0.315967098611789 0.293491429857421 0.289639461081498 0.289639461081498 0.322893673458457 0.289639461081498 0.318336502296164 0.289639461081498 0.301280799166557 0.298996021510104 0.319354651108941 4 4 - 5339158 5339548 5339352.333 5339083 5341206 - gene protein_coding_gene FALSE TRUE AT4G08410.1 proline-rich extensin-like family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT5G06640.1); similar to ATHRGP1 (ATHRGP1), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT3G54590.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G28550.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.0903988161363323 -0.811345516886655 0.434556209173223 1 -0.287163398876025 5.29275875262017 -0.0903988161363323 0.126127355309159
AT3G31915_at 1.59332626688844 1.83377614272141 2.01123243566098 1.48188664639570 1.18059193331753 1.38738180381527 1.65760590270430 1.72379078612394 1.773574340241 1.84431145181761 1.85960485600897 1.62809985456916 1.54936904310388 1.84545419592396 1.90069096576693 1.76942629435983 1.76367630180623 1.76351067552056 1.60686843279399 0.203211300295924 0.212060776532835 0.208132843307815 0.202513623319405 0.207203776765426 0.212801742479616 0.208188855304650 0.207288707841708 0.215733727151055 0.215542070481554 0.206089354425916 0.21013092640405 0.208447203225862 0.217640762693762 0.215295350457312 0.208706206274233 0.206323449874634 0.213558914078860 0.210418834178005 3 3|0 +|/ 12912707 12914527 12914006.667 12912330 12914770 + gene protein_coding_gene FALSE TRUE AT3G31915.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31370.1); similar to hypothetical protein 24.t00018 [Brassica oleracea] (GB:ABD64940.1) -0.0842286440236206 -0.810249324291043 0.435159490163203 1 -0.288008592649143 3.35948087220343 -0.0842286440236206 0.107400685257955
AT4G00920_at 0.61506379637751 0.802733802950393 1.31497700037266 0.887169663232993 0.533045947249543 0.878241181302073 1.07010483796550 0.871024368399206 0.555176407230977 0.743899923228003 1.18920227077005 0.480586862068353 0.604890531503258 0.99523096004834 0.805469844171994 0.873668907709056 0.594773963586659 1.13064358301538 0.891471335632453 0.182945907476876 0.194593999635749 0.182534268667117 0.186586678456223 0.187180569986902 0.185461219009773 0.188242754289406 0.185625824976676 0.198206541258119 0.184900883300538 0.188366858220568 0.183930033190254 0.187133702600083 0.182915224472446 0.190523432006551 0.193487511429099 0.1830004099125 0.191548393040691 0.186496606640052 4 4|0 +|/ 394391 395349 395027.8 393767 395382 + gene protein_coding_gene FALSE TRUE AT4G00920.1 COP1-interacting protein-related similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT2G02770.1); similar to mature parasite-infected erythrocyte surface antigen [Medicago truncatula] (GB:ABE84632.1) 0.0838762783057457 0.810223522635298 0.435173696552173 1 -0.288028474337579 1.65379053509271 0.0838762783057457 0.106260627147562
AT3G62920_at 2.85021194793549 2.91577802906234 2.7774242341588 2.98246573883874 3.02459920563555 2.93890789994459 2.55239945684666 2.86738744228018 2.55637362069203 2.94170401991473 2.42126153032068 2.80592594460236 2.60191582510714 2.39741376409453 2.43610766106766 2.74176732765729 2.69504536552466 2.20346245207592 2.96015514641833 0.191985484587307 0.187470558045341 0.185137338900302 0.182482292694213 0.182482292694213 0.18399180171166 0.182482292694213 0.189871458569893 0.184639384226781 0.192036703382071 0.184453474189348 0.184121173332557 0.188361190486169 0.188668408648411 0.186502876321814 0.182482292694213 0.187110563408318 0.192445382276602 0.186458415266068 3 3|0 +|/ 23271702 23272101 23271999.7 23271637 23272268 + gene protein_coding_gene FALSE TRUE AT3G62920.1 similar to Os05g0371500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055356.1) -0.0735716972944142 -0.810026942906438 0.435281943371722 1 -0.288179932302057 5.54228345074512 -0.0735716972944142 0.0676688791225502
AT3G19070_at 0.669913705939998 0.370450319669401 0.79172689132031 0.670992198395394 0.226568571092383 0.490201498861516 0.259163377144643 0.607655694943626 0.51902524370688 0.545719034377863 0.58599221223979 0.620865904134256 0.840919166244988 0.650777169971853 0.849130095027264 0.75863645412406 0.655487521656693 0.98779542223274 0.889091160818277 0.180479052387055 0.178467880588335 0.180245605356905 0.175568586373387 0.180617463228372 0.184491176227424 0.180374917885105 0.179711248719688 0.181614519204134 0.177437619971058 0.179664946787786 0.174926812816083 0.181959350897147 0.183711509786687 0.184137183598294 0.180383884467855 0.17987120262708 0.184971301892669 0.181324331854712 3 3 + 6594305 6594913 6594587.091 6593779 6594983 + gene protein_coding_gene FALSE TRUE AT3G19070.1 cell wall protein-related similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to TPRXL protein [Homo sapiens] (GB:AAI17320.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447) 0.0802492645313 0.809977539566713 0.435309150160236 1 -0.288217990816198 1.20832351859006 0.0802492645313 0.0940252988805245
AT1G15780_at 7.84179792575249 8.26819560256327 8.2404674447566 8.35170738042945 8.7604103990398 7.89213961277235 8.39406015035923 8.27869054248593 7.72128982620283 8.01755967601972 8.01073524093957 8.0747623978459 8.26009297690657 8.1576811440442 7.43418296970218 8.18884533963511 7.69594525847562 7.81346160838908 7.8357188848344 0.177313169746227 0.172547469890360 0.175536141473621 0.170657820209860 0.169568930077386 0.179225162690063 0.174571436161028 0.171832790537567 0.178731761766289 0.169168227150785 0.170259165238119 0.170031145702464 0.165910930417167 0.171992289223369 0.181918503976105 0.163884650528872 0.176551046460977 0.183298494411487 0.171230129470054 1 1|0 -|/ 5430479 5431369 5430782.3 5430178 5435916 - gene protein_coding_gene FALSE TRUE AT1G15780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10440.1); similar to Globin-like [Medicago truncatula] (GB:ABE79971.1); similar to Os08g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062533.1); similar to CTV.22 [Poncirus trifoliata] (GB:AAN62354.1); contains domain no description (G3D.1.10.246.20); contains domain Kix domain of CBP (creb binding protein) (SSF47040) 0.105884529299640 0.808533414766053 0.436104935815319 1 -0.289329591114541 16.1597600469422 0.105884529299640 0.16968127657419
AT1G35820_at 1.46505631562547 1.73734697819021 1.75971707927838 1.92316474815774 1.35757083912292 2.22543697276366 2.24990334656197 1.83662820101754 2.04273127719965 2.08349234400499 2.17744876730417 1.71027467225562 1.84900224609491 1.46228913168047 2.17759636019618 2.15818509453992 2.28952748192352 2.21652722194927 2.51973045528943 0.224408289018165 0.214871543295797 0.231064407546946 0.215872665773926 0.217281264431454 0.214871543295797 0.214871543295797 0.222132623536976 0.226276171715247 0.223200547590225 0.224364093075044 0.222159207515240 0.222094161782811 0.220848523237892 0.214871543295797 0.229411491230021 0.214871543295797 0.218477167287673 0.223858359428632 1 1|0 -|/ 13309409 13309704 13309492.6 13309331 13310469 - gene protein_coding_gene FALSE TRUE AT1G35820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30520.1) -0.107986477011568 -0.8082869231208 0.436240860841477 1 -0.289519151546428 3.92956525883525 -0.107986477011568 0.175191273060469
AT1G21660_at 7.43381692706178 7.30347509201339 6.93942128507597 6.98897990408245 7.34689673744916 7.0704047831693 8.0183452335808 8.28572164145236 7.03836248110223 7.48136686833347 7.8719627117223 8.29891356246114 7.97104218665212 8.02398433255437 7.56281111906272 7.59201823541957 7.65339926108682 7.31560616438184 7.2618236949887 0.189693311951560 0.197684316934714 0.197948689442161 0.197879175132432 0.196024820635101 0.199105657265724 0.195246387902187 0.201898259643719 0.199867741289176 0.209206484957257 0.198244994617175 0.197672520690483 0.190994280715114 0.194842198656422 0.204568561614401 0.197838552281125 0.208217050237704 0.207243942092162 0.194436633796558 1 0|1 /|+ 7607298 7608471 7607974.5 7605688 7609054 + gene protein_coding_gene FALSE TRUE AT1G21660.1 heat shock protein binding similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT4G12770.1); similar to Os12g0548200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066970.1); similar to Os11g0661200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068408.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE79270.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0741072654450243 -0.80815166541677 0.436315459024996 1 -0.28962314774152 14.9467501395569 -0.0741072654450243 0.070800932085404
AT1G17680_at 5.36268829841668 5.78223524631694 5.21902368905823 5.46124950515338 6.33101981349954 5.71758920983109 5.79293700605926 5.05540978737978 4.97015971008718 5.10668837025879 4.39636800775865 4.47859668044246 5.02854973031271 4.8352384882192 4.30944274834195 5.19897948230108 5.39918901892708 4.75860194224448 5.54963118722599 0.193238942055002 0.189478747281501 0.192783406705029 0.201729766212456 0.198246124152658 0.193475309312091 0.18896195320498 0.190246721180510 0.198480623003919 0.197431040450704 0.191737530019698 0.192448701875245 0.18896195320498 0.195920775151642 0.19784455192486 0.189116266516033 0.204828622946511 0.191604279484810 0.196480087418380 1 1|0 +|/ 6081540 6082104 6081823.4 6076070 6082330 + gene protein_coding_gene FALSE TRUE AT1G17680.1|AT1G17680.2 transcription factor-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to Os11g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067667.1); similar to TPR Domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96329.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.11215134518157 -0.80768211357331 0.436574494419064 1 -0.289984055542219 10.5949926618856 -0.11215134518157 0.185978336900595
AT4G31150_at 4.05996341012187 3.72363308803771 3.94915394055822 3.99082113588004 4.72783094805 4.10567068846608 3.56573372572404 3.37844510288299 3.81940679982888 3.17501317589362 3.25779819029137 3.17986062642381 2.77683582075616 3.57114146822069 3.27844912425406 3.35907825780337 3.87889663679817 3.16131803727697 3.92243135068852 0.21673731253775 0.212460171814971 0.218019197102632 0.22252163195432 0.221357799630842 0.209826046244619 0.218277318355010 0.217656449844673 0.220552655374192 0.212012152225058 0.215746678558952 0.214049817823081 0.224716583365106 0.213055574642807 0.212943289712329 0.210707120333442 0.229957774108892 0.212366358262068 0.218664311458975 4 4|0 -|/ 15144210 15145204 15144626.625 15143511 15145635 - gene protein_coding_gene FALSE TRUE AT4G31150.1|AT4G31150.2 endonuclease V family protein similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_794487.2); contains InterPro domain Endonuclease V; (InterPro:IPR007581) 0.090198587319004 0.807466549203158 0.436693447673899 1 -0.290149681327607 7.41109286114766 0.090198587319004 0.126816679556352
AT3G45700_at 1.90377737731438 1.74277413457262 1.97297410172802 1.87780429749335 1.27105881778361 1.45157182695508 1.50883113707943 1.89664018059785 1.74891751371022 1.51370282744232 1.37263550934973 1.24629339343218 1.30002159491733 1.27751418052748 1.83902970861133 1.68327662783735 1.76754208722343 1.59331956547306 1.36689955371587 0.204732526702362 0.200487635650871 0.202605422265946 0.206118197246157 0.203475789929679 0.200513484376826 0.200487635650871 0.208929610507779 0.205176819485551 0.208666427473913 0.209820912406533 0.206125321252092 0.205703787603974 0.201558136493616 0.20281992545476 0.200487635650871 0.202812796293614 0.202300959470009 0.201359052350564 3 3 + 16791456 16791862 16791591 16789698 16792183 + gene protein_coding_gene FALSE TRUE AT3G45700.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45680.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45720.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45710.1); similar to Major Facilitator Superfamily protein [Solanum demissum] (GB:AAT39312.2); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.0764363306345221 -0.80725187276994 0.436811932145384 1 -0.290314586288954 3.22974267504602 -0.0764363306345221 0.0807926482134547
AT4G15830_at 2.2544088925139 2.33016977777063 2.22301737387044 1.73017924218761 1.85047224551317 1.89262055385425 2.41810689358796 2.28409727136164 2.34043558638478 2.28197794169441 2.61168002719298 3.47808957689649 2.27424689854459 2.52648914086576 3.9365906137343 2.5440847162969 2.50238537108553 2.60120663666395 2.14037523962549 0.195036375945466 0.198719714165657 0.199200033611298 0.197655834587752 0.195873374188137 0.198154201860722 0.201909082663389 0.200000406264971 0.194849553152481 0.198144506749840 0.195708700224006 0.194849553152481 0.199937639541823 0.201765614741137 0.214368372248226 0.198147914651135 0.21879750501952 0.194849553152481 0.197001203276238 4 4|0 -|/ 8995425 8996019 8995684.3 8995126 8996614 - gene protein_coding_gene FALSE TRUE AT4G15830.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT3G01450.1); similar to Os02g0305700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046637.1); similar to Os01g0931200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045295.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13157.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0787301725698361 0.806882314414877 0.437015948785235 1 -0.290598374485616 4.65468880394660 0.0787301725698361 0.0896490297427979
AT3G62080_at 3.44535704111617 3.79308670092068 3.35147366190078 3.24087192215181 3.27473517604842 3.4105222030142 3.66260722163072 3.08358407187022 2.43026391399911 2.81940378193094 2.63524865675021 2.62426046456322 2.78861970389997 2.94972706647291 2.46395411429833 2.98600688913621 2.42925333552307 2.80104242922345 2.8779664800274 0.206979535996518 0.201319054766392 0.200014051223742 0.205558050982767 0.203114943004959 0.206191584524889 0.204800953214633 0.204993521571490 0.202959188481704 0.200014051223742 0.20153481349266 0.200014051223742 0.206333847674050 0.209084563619197 0.200219633601881 0.200014051223742 0.207706341192114 0.200014051223742 0.206402212582071 3 3|0 +|/ 22998769 22999429 22999095.6 22997149 22999752 + gene protein_coding_gene FALSE TRUE AT3G62080.1|AT3G62080.2 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT2G19830.1); similar to CHMP family, member 7 [Danio rerio] (GB:AAH66676.1); similar to novel protein (zgc:73300) [Danio rerio] (GB:CAK04367.1); similar to Os01g0286000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042774.1); contains InterPro domain Snf7; (InterPro:IPR005024) -0.0881026638040203 -0.806757076086343 0.437085101486928 1 -0.290694520570294 6.11726748706624 -0.0881026638040203 0.120748832558101
AT1G71696_at 4.24474002799999 3.05867890706124 3.90096268605114 3.37540208079174 3.85116433058557 3.85788445297492 4.28110774199625 3.23603922432859 3.45138811427853 3.39238757115804 3.87546119062461 3.85881113740926 3.89231866372621 3.46217309945514 4.08906126206224 3.69881818285781 3.75065506941017 3.93228909358895 3.80712670682005 0.276252224002271 0.269987701973885 0.281269488515636 0.277706574474547 0.269987701973885 0.295826747422988 0.279550215455587 0.277890477479925 0.288628054258149 0.275315277429033 0.269987701973885 0.275629546632980 0.273085775325759 0.281484141665497 0.269987701973885 0.269987701973885 0.284385042294683 0.282636851622215 0.277775352832423 1 1|0 +|/ 26971982 26972803 26972452.571 26970549 26974234 + gene protein_coding_gene FALSE TRUE AT1G71696.1|AT1G71696.2 SOL1 (suppressor of LLP1 1); carboxypeptidase A Encodes a Putative Zn2+ carboxypeptidase, 4 splice variants have been identified but not characterized for different functions and/or expression patterns. similar to Peptidase M14, carboxypeptidase A; Carboxypeptidase regulatory re (GB:ABE81213.1); contains InterPro domain Peptidase M14, carboxypeptidase A; (InterPro:IPR000834); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969) 0.155429788613624 0.806752699890653 0.437087518015966 1 -0.290697879960317 7.41087206137902 0.155429788613624 0.288288933114795
AT1G31630_at 0.471142622224263 0.639040603347216 0.694204834602427 0.82448122996517 0.740233973068494 0.91104504522738 0.781041044660503 0.991650226024896 1.38492959462220 0.956774662185426 0.776922880635958 0.907124730285881 0.825666011981957 0.830868156885951 0.983256408378119 0.869190438898662 0.697488941319185 0.703111964766255 0.775696557824894 0.193771564308101 0.197972984146411 0.195407391262412 0.196868082067725 0.193771564308101 0.198311804566386 0.196454317479567 0.194282482325089 0.198927191919174 0.197250003673156 0.211133084379826 0.193771564308101 0.206053585851388 0.198603195781702 0.197102573874280 0.195630643031865 0.193771564308101 0.207419261860260 0.196358471247049 1 1 - 11318633 11319067 11318770.364 11318509 11319528 - gene protein_coding_gene FALSE TRUE AT1G31630.1 MADS-box family protein similar to MADS-box protein-related [Arabidopsis thaliana] (TAIR:AT1G31640.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE94129.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0715786332909309 -0.806711721188797 0.437110146823389 1 -0.290729336515837 1.68827359565079 -0.0715786332909309 0.0596208657363125
AT3G52420_at 7.26978978509276 7.45379147719556 6.61197227848099 6.86933809640634 7.1538531767483 7.42541315331316 6.21330446015837 7.06457225526151 6.88665081409102 6.3827063268546 6.54028442820818 6.60963785904745 6.47135506997584 6.44902706082666 6.26429075817944 6.17103460302138 6.16211071634354 6.1641562720315 6.4578590150731 0.186908088038706 0.186556024433889 0.192584637104341 0.182021181860417 0.183408608407922 0.195028305480515 0.189178997262973 0.187085928280236 0.192095918395566 0.187405679702204 0.193579141412977 0.183415236311399 0.186743502517050 0.18732829723112 0.187464960012847 0.187403680850401 0.1996574183008 0.191307451789739 0.184441743114672 3 3 + 19440763 19440915 19440829.909 19440713 19441041 + gene protein_coding_gene FALSE TRUE AT3G52420.1 outer envelope membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63160.1); similar to outer envelope membrane protein (GB:AAA63414.1) -0.103485970454255 -0.806670825076569 0.437132730792478 1 -0.290760728273433 13.4726172426457 -0.103485970454255 0.164036786620098
AT1G56345_at 2.50087862394392 2.87896445302909 2.81455247722317 2.98259953748033 2.81051415053608 2.45376789506864 2.91442118671528 2.67214122839101 2.85401583312929 2.94621407698191 2.46131608742202 2.25656114986698 2.40271743636728 2.42496286041582 2.76067548262355 2.58982513184049 2.80951797806035 2.56252609489826 2.36745243242998 0.197499929666888 0.200197112975528 0.196646811372835 0.197320353117047 0.198018572879487 0.198846408176539 0.198742722736635 0.198903821393799 0.203846028513451 0.202827975057265 0.200086475366065 0.197879660748735 0.198066443824813 0.198105711590137 0.197024314287763 0.199357099494365 0.196646811372835 0.198869211711382 0.202176479453349 1 1 - 21097080 21097627 21097338.091 21096658 21098126 - gene protein_coding_gene FALSE TRUE AT1G56345.1 pseudouridine synthase family protein similar to Pseudouridine synthase, Rlu [Medicago truncatula] (GB:ABE84249.1); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145) -0.0826454305514952 -0.806610900966358 0.437165823937004 1 -0.290806723351395 5.38151672331539 -0.0826454305514952 0.103421871207698
AT4G32390_at 8.0312225895452 8.33149781780025 7.75536945552699 8.14906924640982 7.97665440165043 7.56108279640462 8.54076669996234 8.66558794480526 7.56151765810011 7.13416538833209 7.7187442353721 7.92890810441915 7.4694963386414 7.90095530007634 7.9782014282678 7.38491867394436 7.09529085858937 7.61747095517306 7.13467575693305 0.146020168621349 0.150693383986343 0.161390560610463 0.151876148812316 0.145533963291985 0.173849967347634 0.147827322419794 0.148993366446142 0.160798908904288 0.153046196935151 0.148351669974175 0.151172149308951 0.149792687293678 0.146554506600255 0.148476838115572 0.148015298123481 0.170621876934712 0.146454792218273 0.153214699507575 4 4 + 15637053 15637427 15637283.455 15636556 15637608 + gene protein_coding_gene FALSE TRUE AT4G32390.1 phosphate translocator-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT2G25520.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE88491.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.0858814095041311 -0.806551376457513 0.437198698032936 1 -0.290852408741221 15.5831736213125 -0.0858814095041311 0.113933181982981
AT3G26650_at 13.5849189696387 13.7229868363722 13.6353652526965 13.6049963436229 13.3478049053830 13.4323950797045 13.940714684747 14.1386084330068 13.8194213446376 14.1742002356721 14.2914754136985 14.3718522267550 14.2613335463293 14.1629294606569 14.2991976366127 14.3114301962475 14.1398555781516 13.8975235658295 14.0455610870972 0.0681146177008353 0.067751943613291 0.0705318576478507 0.06702317317402 0.0667785636778932 0.0692074910283931 0.0703069336222291 0.0683283743840578 0.074182112876165 0.069028849348956 0.0698973165503248 0.0667785636778932 0.0667785636778932 0.07291899111632 0.0689065503516958 0.0667785636778932 0.069569946488677 0.0749501695408582 0.0670504527734624 3 3 + 9797442 9797950 9797746.727 9796308 9798282 + gene protein_coding_gene FALSE TRUE AT3G26650.1 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent). Identical to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GAPA) [Arabidopsis Thaliana] (GB:P25856;GB:Q41184;GB:Q9LSE6); similar to GAPA-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G12900.1); similar to glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] (GB:ABA86963.1); similar to unnamed protein product [Pisum sativum] (GB:CAA33264.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P12858); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) -0.06888901084496 -0.806504397852484 0.4372246444463 1 -0.290888462989078 27.7909791092318 -0.06888901084496 0.0445602955283677
AT2G27010_at 0.719768673389205 0.935709959148776 0.635522018066333 0.835129513576212 0.80789053171838 1.10982111624314 0.795182974016753 0.710621685341994 1.05168602616097 0.467986966780588 1.09819158329623 0.789091384742842 1.16588528211651 0.588346689545363 0.935575713779927 0.82737403300908 0.94449575384395 0.813143723446103 0.888139962528213 0.158871549247342 0.155647881179528 0.156199323090817 0.152945250521703 0.153134469180277 0.157522079710051 0.164568348151291 0.152945250521703 0.155115361402795 0.158332355420513 0.162954146832312 0.153564365167178 0.155292438188697 0.157971502134281 0.157818577055535 0.159757157352364 0.161716550453203 0.160897924955761 0.154319545762010 2 2 - 11533314 11533882 11533549.909 11533246 11534932 - gene protein_coding_gene FALSE TRUE AT2G27010.1 CYP705A9 (cytochrome P450, family 705, subfamily A, polypeptide 9); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A32 (cytochrome P450, family 705, subfamily A, polypeptide 32), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20950.1); similar to CYP705A8 (cytochrome P450, family 705, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G27000.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.074714336954705 0.805645174428084 0.437699374579155 1 -0.291547557955609 1.66763947841881 0.074714336954705 0.0743906588311162
AT3G28190_at 0.475984560484876 0.791215262063364 0.793080210242172 0.863765236176113 0.751922713582724 1.02234013540199 0.935140084210943 0.961578980000045 0.996810697319338 0.88772456223216 0.635677050950486 0.534069149711058 0.732714899268318 1.16166627266396 0.557952020993987 0.750025423745413 0.89003821053941 0.922364381807746 1.08122202866499 0.188433979770294 0.189230461008124 0.190401992226076 0.188906296742837 0.186579478773798 0.186442389502971 0.189332861142615 0.193858152394869 0.191571576025719 0.190113165311958 0.190961460101896 0.186177705603746 0.18769702624215 0.193392816467375 0.190609391644229 0.193719189811411 0.186177705603746 0.191872939183525 0.188586308948201 3 3|0 +|/ 10513475 10514255 10513809.5 10513472 10514294 + gene protein_coding_gene FALSE TRUE AT3G28190.1 unknown protein -0.074362492183919 -0.805257500520172 0.437913679463885 1 -0.291844733569808 1.70520299224472 -0.074362492183919 0.0730510791159713
AT4G00530_at 2.64049564705088 2.8659293095382 2.57345166185231 2.55260519652303 2.31689125691212 3.00795427760962 2.85737536977186 2.62336155536079 2.84529818604859 3.12838423702588 2.95798170871488 3.14529183178561 2.82018428553016 2.70813756347144 2.93729404364089 2.84937479583097 2.71226010410883 3.21101925397450 2.92777740750684 0.204845589668361 0.202945813732529 0.200421253837501 0.209517183317015 0.200421253837501 0.200614166099821 0.208217758622291 0.202471843564020 0.218151165786633 0.202616752341937 0.202357225958288 0.200421253837501 0.206494881649906 0.211133891082066 0.214466856275382 0.200421253837501 0.205240458086341 0.200889890054412 0.207973038140135 4 0|4 /|- 233032 233311 233128.25 233030 233553 - gene protein_coding_gene FALSE TRUE AT4G00530.1 unknown protein -0.091762600342221 -0.805094337905778 0.438003895847916 1 -0.291969770041554 5.62218114694865 -0.091762600342221 0.132201244999676
AT1G66180_at 6.71263258515286 7.21230936935051 5.90373066815966 6.11382468181809 7.03804247848865 6.93806679162502 7.02257865796089 7.70322172274203 7.92260395621054 7.87031663696694 9.14860041835662 8.35908394756278 8.77300189790192 8.97748398895305 8.21077359890034 8.04971635431856 7.86535390156453 8.33093551451045 8.19906446565751 0.17035820090704 0.167103110684028 0.177773376157132 0.166971646558154 0.162353427270810 0.170007578549221 0.164885917361121 0.173830458088986 0.178971039259696 0.172521777461902 0.175649581825716 0.167126031874731 0.162642766083217 0.174578101627103 0.168499910241757 0.166114257269245 0.175581526411419 0.165847434792737 0.175025418202725 1 1 + 24651595 24652134 24651847 24650851 24652476 + gene protein_coding_gene FALSE TRUE AT1G66180.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G37540.1); similar to Os01g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044781.1); similar to Aspartic proteinase nepenthesin-1 precursor (Nepenthesin-I) (GB:Q766C3); similar to Os03g0271900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049694.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.0986145394825875 -0.80488807318711 0.438117961861555 1 -0.292127805092602 15.0613993972640 -0.0986145394825875 0.151567287576077
AT1G16070_at 0.761461138024461 0.816899794226302 0.967665658105955 0.65526537002823 0.770309541751881 0.767708273268587 0.647789195787415 0.60481619832576 1.36287637164244 0.975459838648912 0.781608220130765 1.28353619240017 0.989631082429917 1.44083504567867 1.73082095179826 1.13454353350765 0.738284684529684 1.22352853140867 0.981570128322352 0.183838667604051 0.192230050418529 0.189841203482372 0.182993274126040 0.186207177572118 0.187316411744289 0.183984316415446 0.182993274126040 0.182993274126040 0.186421464889335 0.193850311544777 0.182993274126040 0.19320295691374 0.189068986152798 0.187086237176401 0.187993864386058 0.182993274126040 0.184875589705606 0.182993274126040 1 1|0 -|/ 5511895 5512960 5512429.556 5511867 5513890 - gene protein_coding_gene FALSE TRUE AT1G16070.1|AT1G16070.2 AtTLP8 (TUBBY LIKE PROTEIN 8); transcription factor|AtTLP8 (TUBBY LIKE PROTEIN 8) Member of TLP family similar to AtTLP6 (TUBBY LIKE PROTEIN 6), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G47270.1); similar to tubby protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD28008.1); contains InterPro domain Tubby; (InterPro:IPR000007) 0.0706043566142929 0.80488526263658 0.438119516252915 1 -0.292129958222802 1.88498138440984 0.0706043566142929 0.0554101548859526
AT3G07270_at 7.36176065095697 8.08765174532254 7.41814278354039 7.76070096259856 8.0304302427818 7.8791626192996 8.31195003018786 8.00675318771484 7.31375265907881 7.25452899530497 7.66665091453543 7.89517411734347 7.26302884368518 7.87034651959537 8.04473343737744 8.09942013902129 7.69125578365846 7.21825574469932 7.48760975093668 0.202815958252042 0.191581147810178 0.20100739896011 0.194340971880410 0.191366653486541 0.196978102519828 0.189400558955101 0.195056230631397 0.207088818457993 0.204013160681129 0.19280537443383 0.189400558955101 0.190162229379648 0.201041647913111 0.195460477718836 0.192579061617048 0.199105050019938 0.204450666700188 0.191416989476441 3 3 + 2316530 2316974 2316754 2314004 2317194 + gene protein_coding_gene FALSE TRUE AT3G07270.1|AT3G07270.2 GTP cyclohydrolase I similar to GTP cyclohydrolase I [Lycopersicon esculentum] (GB:AAL49957.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain GTP cyclohydrolase I; (InterPro:IPR001474) 0.0983623171127748 0.804837538551836 0.438145910889459 1 -0.292166518082330 15.3923550224318 0.0983623171127748 0.150894437655622
AT4G14760_at 7.1896310339372 7.51199233847148 7.43161060628947 7.55895490867094 7.59287117704287 7.7959914400073 8.07003041948903 8.24193494206621 8.23856041146961 8.62505024160925 8.98920367401721 8.57275792727757 8.51415621582303 8.59413054328957 8.33577543238826 8.35015902291379 8.05090717389378 8.60026605019127 8.61296099158066 0.116311336918987 0.116975476725337 0.119620180779312 0.111943150012073 0.111964649775844 0.118056320856124 0.112522729737637 0.111883087087181 0.114422637721643 0.114732269295191 0.114377400849839 0.112729815552450 0.111417826315363 0.119821202233801 0.115537713952389 0.111417826315363 0.121171820638519 0.111417826315363 0.112545651840437 4 4 + 8480509 8481055 8480774 8475964 8481089 + gene protein_coding_gene FALSE TRUE AT4G14760.1 M protein repeat-containing protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT3G22790.1); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03080.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82954.1); similar to Prefoldin; tRNA-binding arm; t-snare; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE80288.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.074905596866931 -0.804543860908069 0.438308357423474 1 -0.292391452969497 16.1706821348439 -0.074905596866931 0.0756196186682449
AT1G52680_at 1.90375162427921 1.83542777620860 2.14637775566105 2.04439677664709 1.33847886584359 2.32411603035577 1.42932766299699 1.67637124712097 2.29708824560888 2.24860740130947 2.20199393165266 2.16010923237412 2.23732985487404 1.99470617939660 2.17374708237940 2.06810268698442 1.86032353444445 2.68830201330119 2.08055285929743 0.186395206495032 0.192164954267533 0.185482480181934 0.188447514997943 0.185548092883076 0.189330689594210 0.183166920028948 0.196038848431289 0.190257156779892 0.193437864235385 0.186986358997124 0.187782077928111 0.189252029060867 0.184653167735685 0.201817630172113 0.183166920028948 0.190757899235757 0.203233724444093 0.194108817699011 1 1|0 -|/ 19622088 19622583 19622305.111 19621811 19622689 - gene protein_coding_gene FALSE TRUE AT1G52680.1 late embryogenesis abundant protein-related / LEA protein-related 0.108225045914684 0.804452082387915 0.438359132433603 1 -0.29246173358094 4.02819412563805 0.108225045914684 0.177123745433637
AT1G68910_at 4.49533823023340 5.07494586945942 4.97281238871751 5.11004630488236 5.45521539244837 4.76042648535447 5.64657856639076 5.55477314409334 5.57252842455332 5.0749937252734 6.0133602427146 5.55503204236183 5.75329201091744 6.07118603898724 5.02961521801012 5.78254816118945 5.13629846649344 5.24442885674132 5.10913246434434 0.199207195376649 0.203793384157532 0.197467417336616 0.212817668551361 0.208086526515228 0.205563369853753 0.201259036740673 0.200353870231448 0.197388016924183 0.201747434942171 0.194398602522531 0.195105227129541 0.213490762470672 0.210091133561275 0.205524754472024 0.192421092809214 0.215196853829918 0.206348353685015 0.200065391175540 1 1 - 25912626 25913019 25912792.7 25911794 25914148 - gene protein_coding_gene FALSE TRUE AT1G68910.1|AT1G68910.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11390.1); similar to putative protein [Medicago truncatula] (GB:ABE91791.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.101359057629846 0.804357658722962 0.438411374860441 1 -0.292534032390371 10.5464862148978 0.101359057629846 0.159166835280717
AT1G60180_at 0.800932758823023 0.937460557842941 1.46709300148754 0.8221810076087 0.730724605498076 1.15319192914785 0.950455417194342 1.02493405124038 0.89419896533922 1.14683916093321 0.643352448807099 0.714540534608084 0.78408366871856 1.00557699341342 0.67995052648594 1.00081084564522 1.04523357976077 0.740983630851913 0.225896869301872 0.216670086927136 0.214501947377743 0.213659297717067 0.215597238406182 0.211321798875945 0.214828586839697 0.210232649490321 0.214348079347375 0.215667552174812 0.216692874861585 0.217353649000673 0.219364194936154 0.218840260335808 0.217278252379511 0.210232649490321 0.212961839754643 0.22208430885071 0.222284860450956 0.214649554116385 1 1|0 -|/ 22199203 22200011 22199657 22199190 22200350 - gene protein_coding_gene FALSE TRUE AT1G60180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18150.1); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0930117348359887 0.80421695555949 0.438489230249125 1 -0.292641752887001 1.77710242963593 0.0930117348359887 0.136106918389938
AT1G08980_at 9.7989837961082 10.0207541310530 9.42958716782239 9.31083205669001 10.4566746861320 10.2027201974705 9.0787551397666 8.74825124592551 9.4950576226459 9.55581758648642 9.42675799338468 8.89119975248214 9.24276778394588 9.2550334393905 9.33584668282947 8.67027596972292 9.38390108541907 9.29274216293731 9.36386566350495 0.101996040332703 0.0988366057542413 0.0982391501838905 0.10245391378454 0.101604886221486 0.0980765910541846 0.103972825944532 0.103386214423415 0.108696992288788 0.0980765910541846 0.101286876508484 0.100046480622832 0.101889122167342 0.102813406095048 0.10372801854285 0.101900733062040 0.105787880065734 0.102499354523808 0.0980765910541846 1 1 + 2885712 2886409 2886085.818 2884414 2886623 + gene protein_coding_gene FALSE TRUE AT1G08980.1 ATAMI1 (AMIDASE-LIKE PROTEIN 1); amidase Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. similar to chloroplast outer membrane translocon subunit, putative [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to Amidase [Medicago truncatula] (GB:ABE90137.1); contains InterPro domain Amidase; (InterPro:IPR000120) 0.0770013833501562 0.803871536999382 0.438680399471609 1 -0.292906130538218 18.9602677524426 0.0770013833501562 0.0842494665911969
AT4G23780_at 1.90498644884012 1.62496329432073 2.00887355688816 1.73267595568060 1.41201987272163 1.57969089574422 1.60563431052399 1.57451571356204 1.96587952748293 1.84444654083425 2.01678102588227 1.94375521420925 2.3374323477021 2.33942532942446 1.89323898863376 1.79305698511399 1.84209673338597 2.22331348564417 1.90602975819033 0.153533890420619 0.159807830630676 0.157494798339300 0.151099586734286 0.155458410413534 0.154098523133561 0.157251222164344 0.155354147023468 0.151099586734286 0.154199077322102 0.156560215506781 0.153998707601248 0.156471946390312 0.160428309976332 0.156550385048717 0.151099586734286 0.162631049287908 0.159042832572102 0.158452656795342 4 4 - 12386363 12386783 12386615.636 12386363 12386809 - gene protein_coding_gene FALSE TRUE AT4G23780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23770.1) 0.0744878500136295 0.803720861975033 0.438763806535816 1 -0.293021423425441 3.65746473399452 0.0744878500136295 0.074187793837321
AT1G54370_at 8.02526826820846 8.27488598493477 7.81130430692622 8.16270756946693 8.14612119103204 7.95127012046788 7.24593293639799 7.4155399193796 7.90748501329202 7.29546621476494 7.30235807565569 8.03226396784128 7.4235334983168 7.44886593057612 6.8949291905748 7.70144337074507 7.75892524119447 7.71410378992108 7.76686438713854 0.235735061254241 0.227638775115187 0.249653262542232 0.246343212614748 0.23937026245246 0.24500384385809 0.235451448405809 0.232597037977884 0.245393127826888 0.237634338153195 0.235878280127228 0.235438116301962 0.229594967345488 0.246949973134632 0.258234459470039 0.229801790897900 0.271648636211148 0.227638775115187 0.229114711397306 1 1 - 20297047 20298150 20297465.444 20296818 20300798 - gene protein_coding_gene FALSE TRUE AT1G54370.1 ATNHX5/NHX5 (NA+/H+ ANTIPORTER 5); sodium:hydrogen antiporter Identical to Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5) (NHE-5) (NHX5) [Arabidopsis Thaliana] (GB:Q8S396;GB:Q9SLJ7); similar to sodium proton exchanger, putative (NHX6) [Arabidopsis thaliana] (TAIR:AT1G79610.1); similar to Na+/H+ antiporter [Populus tomentosa] (GB:AAX37333.1); similar to Na+/H+ antiporter, isoform 2 [Solanum lycopersicum] (GB:CAC83608.1); similar to Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (GB:Q8RWU6); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.0776958488905288 0.803674979261347 0.438789207255379 1 -0.293056527994342 15.4747078311859 0.0776958488905288 0.0869634942978106
AT3G53710_at 7.41614583288358 7.26476573672758 7.20516763373827 7.08522233548106 7.51922510138276 7.30966601754564 7.2613941314973 7.36024182619923 7.14087511077824 6.85889336153001 7.329615268446 7.23629433469989 6.98442423972256 7.22993728753802 7.33029958590899 7.2838438242185 6.91481478859074 6.75777932325172 6.84345863572725 0.177915439494565 0.177048807129485 0.181695774771344 0.172276748331204 0.177138458987696 0.188962089136237 0.171230149554106 0.178211862929273 0.182230266749949 0.176204256960355 0.180622977563309 0.176930165956788 0.176372612640891 0.174959882070051 0.175736661747115 0.175849505843190 0.187912890540693 0.177511747064903 0.180271231468167 3 3|0 -|/ 19914720 19915507 19915029.8 19914291 19916467 - gene protein_coding_gene FALSE TRUE AT3G53710.1|AT3G53710.2 AGD6; DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to ASP1 (PDE1 SUPPRESSOR 1), DNA binding [Arabidopsis thaliana] (TAIR:AT2G37550.2); similar to unknown [Solanum tuberosum] (GB:ABA46771.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.0699085512059487 0.803610235807286 0.438825050943351 1 -0.293106059796371 14.3432878023780 0.0699085512059487 0.0522007810248139
AT2G36610_at 1.57105037390673 1.17814461735352 1.48644657666717 1.20006858409939 1.4099414829904 1.47526459590622 1.30382079428702 1.77013816153485 1.88684088317093 1.41646214351006 1.11859562378626 1.98213591352285 1.27020918721428 1.30149773056251 1.74291960307560 1.61578331496273 2.03120286325408 1.95771215076198 0.871291655963589 0.236764514757808 0.229121388597087 0.240429493838267 0.231985049941381 0.23571372509444 0.229121388597087 0.250672271337549 0.240208338549500 0.241743336789887 0.229561841982096 0.230873988214647 0.246155470874538 0.233634408213916 0.244350658755584 0.234557646228855 0.235571573648996 0.236170829667612 0.236268035574505 0.233461076423185 2 2 + 15356457 15356933 15356801.75 15356406 15357167 + gene protein_coding_gene FALSE TRUE AT2G36610.1 ATHB22 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22); DNA binding / transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-22 (Homeodomain transcription factor ATHB-22) (HD-ZIP protein ATHB-22) (ATHB-22) [Arabidopsis Thaliana] (GB:Q4PSR7;GB:Q9ZQB1); similar to ATHB51/LMI1 (LATE MERISTEM IDENTITY1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G03790.1); similar to Leucine zipper, homeobox-associated; Homeodomain-related [Medicago truncatula] (GB:ABE89090.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.0865586553281368 0.803350004958648 0.438969141012082 1 -0.293305113293925 2.93387870298020 0.0865586553281368 0.117129538651994
AT3G61610_at 1.65660608304099 2.24742631416757 1.3760923594978 1.34810108905139 1.52455450272635 1.24035536245921 1.30359694814482 1.66649022694198 1.92209564705163 1.88099167110007 1.92363446478643 2.38762372307625 2.17344096919356 1.89613380969224 2.12877069782502 1.30743800562670 1.89289609134344 1.99836614071072 1.59298580930791 0.193295616402486 0.19566733204689 0.195644147919102 0.214009272835525 0.198682127427448 0.19691646827321 0.197962684380925 0.193295616402486 0.205592329878918 0.205535969487790 0.196677738716439 0.207908738072216 0.193568728029809 0.198922059273332 0.199682560441551 0.193295616402486 0.209873831095308 0.193295616402486 0.199430416404286 3 0|3 /|+ 22811197 22811957 22811529.778 22810002 22812180 + gene protein_coding_gene FALSE TRUE AT3G61610.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT4G23730.1); similar to Aldose 1-epimerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72415.1); similar to Os01g0658700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043765.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) -0.090703559672446 -0.80307434738998 0.439121806739263 1 -0.293515905021609 3.42651737588793 -0.090703559672446 0.129769391898725
AT2G41720_at 7.46950668812129 7.14552617443822 7.36124750859188 6.8711698589843 8.38800335137768 6.91150738482172 7.90439800199612 7.72333715268227 6.54255658835148 7.2522986659292 6.09548217606134 7.60289666865782 7.11155590436588 6.68500704125895 7.03658759631656 7.68571886034594 7.02318486990466 6.85772640897837 7.60657959010667 0.222506786685636 0.222506786685636 0.233966507161546 0.233084657802844 0.231538345560174 0.256285146662442 0.222506786685636 0.222506786685636 0.246085680825491 0.240944671923848 0.239964120337184 0.228119042068217 0.230966259676274 0.242548197729540 0.222506786685636 0.225372325448392 0.238494022156798 0.226027384796166 0.227215667200695 2 2|0 -|/ 17410845 17411741 17411307.1 17410681 17414213 - gene protein_coding_gene FALSE TRUE AT2G41720.1|AT2G41720.2 EMB2654 (EMBRYO DEFECTIVE 2654); binding|EMB2654 (EMBRYO DEFECTIVE 2654) similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAM15782.1); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os07g0213300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059180.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os07g0213300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059180.1); similar to Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) (GB:Q76C99); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.149625826212584 -0.802920944516483 0.439206779994082 1 -0.293633182630131 14.5448777928927 -0.149625826212584 0.276777271750170
AT3G48960_at 1.31072260135593 1.06423309206982 1.04332325805190 1.47613280690544 0.664784282768831 1.04303570486788 1.02818692153193 1.15210161140151 1.41783688561463 1.54135186973935 1.77758838634193 1.11885802444072 1.75787147691811 1.22164640701335 1.26139745218027 1.21339028043698 1.67671968870866 1.41069788034830 1.59036426325801 0.200875885359391 0.200109811005446 0.200541029766533 0.200109811005446 0.200666619042368 0.204208017133698 0.200109811005446 0.206637642443773 0.213632645913750 0.206618806933534 0.203655073274171 0.209352485341905 0.215174445803348 0.201071090033977 0.207562268670318 0.204101518900215 0.208016904834897 0.212939969707723 0.218534624830200 3 3|0 -|/ 18161576 18162315 18161877.9 18161429 18162397 - gene protein_coding_gene FALSE TRUE AT3G48960.1 60S ribosomal protein L13 (RPL13C) Identical to Putative 60S ribosomal protein L13-2 (RPL13C) [Arabidopsis Thaliana] (GB:Q9SMT4); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.3); similar to 60S ribosomal protein L13-2 (Cold-induced protein C24B) (GB:P41129); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380) -0.0843692583817054 -0.802919221047458 0.439207734723102 1 -0.293634500122747 2.57095947107876 -0.0843692583817054 0.110336452583699
AT3G09140_at 1.34326865934359 1.35712396431258 1.35380140550879 1.55320933081171 1.05909841696334 1.34600572640875 1.23553655047232 1.21736792445567 1.31721430646093 1.12930512332416 1.09369763621324 1.27146155248269 0.961659953468182 1.22073271759207 1.27460571985012 1.16621802717961 1.22618961715921 1.41064959789569 0.853478622818273 0.208897551872373 0.211350986953689 0.212778776926812 0.222365013301908 0.211567659454546 0.214887604303686 0.211785653502308 0.208115537909007 0.221212803860734 0.212681669785400 0.208605952004052 0.21501399913546 0.217379331844447 0.209753008427096 0.211588930973735 0.210933686942911 0.218565800640914 0.211997234049223 0.219769620942300 3 3 - 2801468 2801811 2801652.364 2800858 2802800 - gene protein_coding_gene FALSE TRUE AT3G09140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43240.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01150.1); similar to Os04g0594500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053728.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB44062.1); similar to OSIGBa0142I02-OSIGBa0101B20.29 [Oryza sativa (indica cultivar-group)] (GB:CAH67986.1); contains InterPro domain Protein of unknown function DUF674; (InterPro:IPR007750) 0.0714284735697085 0.802829220777026 0.439257592962651 1 -0.293703296679365 2.45975209908354 0.0714284735697085 0.060594193705189
AT4G13780_at 8.52353727201376 8.50919467115635 8.42759569019004 8.47343234371608 8.87041567599134 8.47148035851747 8.19122610478846 8.07298197412154 8.26657114434167 8.26683276992774 8.20316976742368 8.33371844559504 8.00578668470716 8.30437851314873 8.00421180157406 8.30901431273037 7.95798964544737 8.12070421985086 8.19666865080027 0.139021311423618 0.138925584146134 0.131521192449826 0.136645152122350 0.136340935578534 0.140196448865248 0.134330699842477 0.13226508731873 0.137476015094611 0.137652911442014 0.130902883035797 0.131666490566970 0.139166375793561 0.136699994297370 0.137879384369196 0.145584068934791 0.141845067417106 0.137124967939186 0.135339541559003 4 4 - 7993363 7994039 7993604.091 7993151 7998511 - gene protein_coding_gene FALSE TRUE AT4G13780.1 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative Identical to Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) [Arabidopsis Thaliana] (GB:Q9SVN5); similar to tRNA-binding region domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40660.1); similar to methionyl-tRNA synthetase [Oryza sativa] (GB:AAC99620.1); similar to Aminoacyl-tRNA synthetase, class Ia; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE91897.1); similar to Probable methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) (GB:Q9ZTS1); contains InterPro domain Methionyl-tRNA synthetase, dimer-forming; (InterPro:IPR008224); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain t-RNA-binding region; (InterPro:IPR002547); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Methionyl-tRNA synthetase, class Ia; (InterPro:IPR002304) 0.0740050818517366 0.802815362736404 0.43926527035296 1 -0.293713889216826 16.6415976090617 0.0740050818517366 0.072484451748113
AT1G55090_at 6.9505227140485 7.33696241891428 7.4902061142892 7.30115562112162 7.61685188974267 7.33398479721354 7.5266492730581 7.1686825160044 6.62731322967023 6.89658826629009 6.70460780559651 7.02590900491474 6.88588250816387 6.46907753583215 6.73764676411235 6.81739983264978 7.1713606518104 6.9506375710023 7.07881557406165 0.191095903565382 0.180405975987034 0.183267698138143 0.193190758221284 0.187964624500177 0.180773933021356 0.178443515938382 0.187287679434018 0.187826172468567 0.178410491163627 0.182005323619454 0.182477394064859 0.180018580205165 0.179782630665273 0.180763555861772 0.181115883431403 0.213561891733453 0.190092762860056 0.177577909590207 1 1|0 +|/ 20561091 20561823 20561366.5 20558019 20562194 + gene protein_coding_gene FALSE TRUE AT1G55090.1 carbon-nitrogen hydrolase family protein similar to Predicted NAD synthase, contains CN hydrolase domain (ISS) [Ostreococcus tauri] (GB:CAL55348.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_453643.1); similar to putative NAD synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAC07390.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010); contains InterPro domain NAD+ synthase; (InterPro:IPR003694) 0.083794113835856 0.80277847772299 0.439285705174751 1 -0.293742081876665 14.1970707010162 0.083794113835856 0.108519173673479
AT1G67500_at 5.95053682433199 6.0679133820086 5.52401959803225 5.7605423505412 6.36873581286189 5.86134627562045 4.67171180493055 4.15100028769547 4.62534539123215 5.14485602280921 4.48206424646748 4.47887847930125 4.53798019896507 4.48570258140051 4.0360901774776 4.54363353832074 5.16213044202493 4.13131222741540 5.12918067927771 0.247352892202411 0.246342090941226 0.24701831295246 0.254434186226973 0.247033960243984 0.257875287769339 0.243205721888229 0.245674698907795 0.255276895639514 0.243205721888229 0.246988788503308 0.243205721888229 0.244295451398662 0.245284018349900 0.246127739507632 0.247534779141314 0.247736524323302 0.244047942430377 0.244285422122422 1 1|0 -|/ 25291381 25292311 25291906.7 25291370 25300377 - gene protein_coding_gene FALSE TRUE AT1G67500.1 ATREV3 (Arabidopsis thaliana recovery protein 3); DNA binding Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). similar to DNA-directed DNA polymerase delta catalytic subunit, putative (POLD1) [Arabidopsis thaliana] (TAIR:AT5G63960.1); similar to REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like [Mus musculus] (GB:NP_035394.1); similar to DNA-directed DNA polymerase B [Medicago truncatula] (GB:ABE90691.1); similar to DNA polymerase zeta catalytic subunit (Seizure-related protein 4) (GB:Q61493); contains InterPro domain DNA-directed DNA polymerase B; (InterPro:IPR006172); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain DNA polymerase B region; (InterPro:IPR006134) 0.0920668615854503 0.802772451980944 0.43928904358078 1 -0.29374668747895 10.2688181341001 0.0920668615854503 0.133858078387481
ATCG00680_at 10.9791220210777 12.3399184164255 11.7535233111368 12.0812645372293 11.3468115427749 11.1150210886011 11.7647000304757 12.1760455637974 12.0199624899795 12.0752524607599 12.6532593055197 12.7955989215703 12.8159405548542 12.6648690326971 12.5582659079252 12.7947513762742 12.1138138980563 12.5228636070699 12.1851141694468 0.0838274805733593 0.0809705972215127 0.0827279937868419 0.0817984588129736 0.0812148257692714 0.0928130982738215 0.0809705972215127 0.0834395337033093 0.0850927020825972 0.0809705972215127 0.0837066174866905 0.0810412040598218 0.0840691050690671 0.0832070943972838 0.082955193273131 0.0815960389955802 0.0901722318538358 0.0824417660572012 0.0818746685595603 C C + 73336 73777 73560.3 72371 73897 + gene protein_coding_gene FALSE TRUE ATCG00680.1 encodes for CP47, subunit of the photosystem II reaction center. Identical to Photosystem II P680 chlorophyll A apoprotein (CP-47 protein) (psbB) [Arabidopsis Thaliana] (GB:P56777); similar to photosystem II CP47 chlorophyll apoprotein [Coffea arabica] (GB:YP_817508.1); similar to photosystem II 47 kDa protein [Nicotiana tabacum] (GB:NP_054526.1); similar to photosystem II CP47 chlorophyll apoprotein [Gossypium hirsutum] (GB:YP_538962.1); contains InterPro domain Photosystem antenna protein-like; (InterPro:IPR000932) 0.140342948712635 0.802428245116865 0.439479770097040 1 -0.294009721592674 24.0487324967188 0.140342948712635 0.255635954777355
AT1G76080_at 11.7081184535861 11.7788275675926 11.8749098230636 11.8905073263606 11.8740603890893 11.7352137841743 12.2196970163563 12.2709282012813 12.3108954299059 12.2707484889727 12.3961647899282 12.2450974351112 12.4001142747534 12.2392820686699 12.1569191315333 12.4590709922913 12.2732219876334 12.2379399000762 12.2679567661725 0.06303188344238 0.0639258070435845 0.0651165954940972 0.0684302796165982 0.0651301118982973 0.0661296615980818 0.0675567425719187 0.0651911926033791 0.0645570133498236 0.0659293977412052 0.0669575518884729 0.066503548685679 0.0643517084665139 0.0665566811005195 0.0668036641428817 0.06303188344238 0.0661154843682254 0.0647734883265328 0.0663902910285817 1 1 - 28552959 28553853 28553200 28552680 28554313 - gene protein_coding_gene FALSE TRUE AT1G76080.1 ATCDSP32/CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD); thiol-disulfide exchange intermediate similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) [Solanum tuberosum] (GB:CAA71103.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0664719424414564 -0.80226841739068 0.439568349799005 1 -0.294131824129762 24.211121095613 -0.0664719424414564 0.0285126005385252
AT1G52180_at 1.50059622166135 1.55555094144891 1.74006682460539 1.84004547013014 1.83025882841542 1.89006143459756 1.94969628416097 2.01879126642926 2.22954910864102 2.06694906536608 1.88879457792383 2.06889759336584 2.40325140798699 2.3679122184988 2.60560176195664 2.27570718234829 1.64785870558252 2.44733624814213 2.15296075279829 0.266175203092637 0.262500072416833 0.268358379215292 0.273681206405508 0.259289003492786 0.260577198409827 0.273583229696236 0.270400227237129 0.267690435267623 0.259609137142145 0.276550154773929 0.276212067758704 0.291283162214321 0.274455291404427 0.269582941103297 0.260002006460099 0.267146850833445 0.272946811175951 0.274360583251183 1 1|0 -|/ 19428627 19429548 19428808 19428613 19429597 - gene protein_coding_gene FALSE TRUE AT1G52180.1 major intrinsic family protein / MIP family protein similar to DELTA-TIP (delta tonoplast integral protein), water channel [Arabidopsis thaliana] (TAIR:AT3G16240.1); similar to aquaporin [Helianthus annuus] (GB:CAA65186.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.0661498903595874 0.802107498091617 0.43965754630268 1 -0.294254738970101 3.97212821105317 0.0661498903595874 0.0252957258870336
AT2G19360_at 0.931694598993153 0.510046390336999 0.886322244253199 1.06206566616557 0.547042218466383 0.988672024354007 0.794086302512592 0.851087556816127 1.19550946180151 1.35928325582794 0.682900453606418 1.30417454374690 1.52079212074425 0.81976953718729 1.18350240344156 0.63947670650566 0.790649229579959 1.00831695944392 1.22974933348799 0.227043149668622 0.229768241537203 0.244333558762403 0.236886573884707 0.234277268716083 0.227043149668622 0.227750256838345 0.228031032464089 0.247569826522265 0.242490914444271 0.239533064944186 0.248437142799032 0.238504969034161 0.237269937923229 0.242163365201285 0.227043149668622 0.233853684040915 0.257142979553089 0.242451416605875 2 2 + 8385772 8386524 8386195.143 8385746 8390456 + gene protein_coding_gene FALSE TRUE AT2G19360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17750.1); similar to Os03g0807100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051640.1); similar to Os07g0205500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059148.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.084259723306041 -0.801697443643741 0.439884890432805 1 -0.294567852406272 1.94898300589782 -0.084259723306041 0.110397345704980
AT4G30700_at 2.16490527798484 2.05310959698329 2.1139362721292 1.58608774596523 1.8658182040997 1.88929504608882 1.63720147528537 1.71767368843076 2.01167732344045 1.74785099425649 2.13546099331237 2.37149464039962 2.13731614027913 1.83266000341564 2.01454184561694 1.86449788970445 2.21611553030419 1.8740512703712 1.84221946831041 0.206114618013556 0.204440364182400 0.204256194105286 0.20286606585364 0.204893949269048 0.209420128605710 0.202283568076979 0.207428759721827 0.210387264064367 0.203825455783382 0.20064508130924 0.204125913713136 0.20064508130924 0.203719264184875 0.205079588752239 0.20064508130924 0.209708530285704 0.212190501958477 0.205533781711935 4 4 - 14962666 14963160 14962909.636 14962499 14965021 - gene protein_coding_gene FALSE TRUE AT4G30700.1 pentatricopeptide (PPR) repeat-containing protein similar to EMB2758 (EMBRYO DEFECTIVE 2758), binding [Arabidopsis thaliana] (TAIR:AT4G33990.1); similar to Os06g0185800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057005.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE79494.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0795399172863326 0.801495402608968 0.439996935223738 1 -0.294722077090112 3.84001168895985 0.0795399172863326 0.0944931203502904
AT1G53400_at 9.3474550337132 9.36363499451646 9.1004359368343 9.3235100147568 9.89758545205937 9.4920268115017 8.89941093514735 8.90431780334102 9.6118838782976 9.31142788832986 9.5642723123408 9.33395816740524 9.32307016687723 9.46646232508367 9.26371794320846 9.46631832727074 8.9482821859449 9.24165311389535 9.5744724019791 0.0924207773679743 0.0890671758621244 0.096839255671621 0.0908654411420587 0.090048076971996 0.0955084518820464 0.0906234567380197 0.0890671758621244 0.104434211114983 0.0911930606913938 0.0899920326945884 0.0890671758621244 0.090257021415563 0.095262820793794 0.0909330554285191 0.0890671758621244 0.098267745175606 0.0989062559221088 0.0917614151624278 1 1 + 19928684 19930034 19929650.727 19928420 19930299 + gene protein_coding_gene FALSE TRUE AT1G53400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16960.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB63530.1); similar to Os09g0345000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062935.1); contains domain SUBFAMILY NOT NAMED (PTHR13609:SF2); contains domain FAMILY NOT NAMED (PTHR13609) 0.0756951451631587 0.801115151658479 0.440207859650594 1 -0.295012242590788 18.7036612263782 0.0756951451631587 0.0801535931508797
AT1G13590_at 3.97827902663185 4.00554363749822 4.25444737115478 4.06581745934126 3.71047543675574 4.23507013846783 3.79456339983768 3.97960265281458 3.93855440713983 4.34551995099071 4.06249158997358 4.31108526491005 3.9281543031032 3.73791446833553 3.95946159063073 3.70326442428152 4.28896026427586 4.3822706350462 3.74737098956299 0.180471285340055 0.182259337092863 0.181731476404572 0.184208707307835 0.186690402510215 0.178131379521374 0.187244404090471 0.188466909239326 0.189140731068637 0.192952864101929 0.181795064000589 0.177847181508669 0.182029365724984 0.190538043143774 0.188451456419710 0.184980061178222 0.181103838606457 0.186373476321617 0.177847181508669 1 1|0 +|/ 4648036 4648584 4648368.778 4647946 4648737 + gene protein_coding_gene FALSE TRUE AT1G13590.1 ATPSK1 (PHYTOSULFOKINE 1 PRECURSOR); growth factor Encodes a phytosulfokine-alpha (PSK) precursor, a unique plant peptide growth factor first described in Asparagus. Identical to Phytosulfokines 1 precursor (AtPSK1) [Contains: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] (PSK1) [Arabidopsis Thaliana] (GB:Q9LMY9;GB:Q7PCB8;GB:Q8W5R0); contains InterPro domain Phytosulfokine; (InterPro:IPR009438) 0.081586978619697 0.801080165517112 0.440227269720697 1 -0.295038934059469 8.03156594037979 0.081586978619697 0.101759045483680
AT3G54770_at 1.11202233068559 0.7443226611464 1.15893433845080 1.13941716700773 0.736048831882878 1.37907996964336 0.771892375345017 0.92426703380624 0.896546172525855 1.00983532333214 1.04630777162504 0.654937994454946 0.681241577348794 0.734096892188375 0.865464604565535 0.680572772448795 0.932528739928688 1.10703608670828 0.707471779478505 0.181502517985142 0.175472219211752 0.177930576883567 0.175472219211752 0.180602170088818 0.18354765869105 0.177204766632019 0.183660286463522 0.183384157893417 0.183372181323858 0.177371707990120 0.175472219211752 0.180253428223392 0.177685272010819 0.177008460841923 0.181877385884124 0.186707600974178 0.180556476996630 0.175632151063793 3 3|0 -|/ 20285579 20286468 20285879.2 20284697 20286876 - gene protein_coding_gene FALSE TRUE AT3G54770.1|AT3G54770.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G20880.1); similar to Os03g0286500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049774.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO16994.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0908664281483854 0.801074575259057 0.440230371209312 1 -0.295043198858792 1.85027695350636 0.0908664281483854 0.130915715647645
ATMG00050_at 0.913534954062986 1.00292124737926 0.745347612717004 0.871159432499162 0.906430557114503 0.945938211077089 0.845457178087836 0.71257693421336 1.16402900553285 0.9116014025191 0.747217907353919 0.64844031413892 0.562358247560284 0.700197795100853 0.572119658760627 0.713073653527381 1.06204351745668 1.44535992973968 0.742458511334585 0.297813709900930 0.297813709900930 0.314335929269094 0.297813709900930 0.311066417246927 0.297813709900930 0.319264881173395 0.310956491160557 0.298357604048081 0.297813709900930 0.297813709900930 0.297813709900930 0.305216642669323 0.297813709900930 0.309326074157693 0.299161427213491 0.324294728873822 0.327176573314893 0.304946011982685 M M + 16903 17205 17004 16856 17251 + gene protein_coding_gene FALSE TRUE ATMG00050.1 Identical to Hypothetical mitochondrial protein AtMg00050 (ORF131) [Arabidopsis Thaliana] (GB:P93277); similar to hypothetical protein BrnapMp008 [Brassica napus] (GB:YP_717107.1) -0.067207610128987 -0.801005556624167 0.440268664093824 1 -0.295095850911768 1.74077794143572 -0.067207610128987 0.035900621646201
AT2G45780_at 2.28412986874757 2.69054897429583 3.28631956283421 3.09487585628116 2.67801297583921 2.58007206334708 2.65010964850405 2.70073806561258 2.99798325984356 3.25092446281778 2.75241451074106 2.71460569942558 2.97610019325591 2.86862499805768 2.75063500079816 2.91344570584651 3.36261686197426 3.1634718536519 3.09570568918766 0.211236969639066 0.211045207389239 0.204439359875845 0.227162639469821 0.205716054550816 0.22264875109459 0.201747282552930 0.206246754365933 0.202862751206431 0.210991443230692 0.210516937328381 0.201747282552930 0.201747282552930 0.205042758543972 0.209118200540196 0.201747282552930 0.207940043651767 0.201747282552930 0.213687981869227 2 2 - 18861878 18862132 18862013.556 18861629 18862258 - gene other_RNA FALSE TRUE AT2G45780.1 other RNA Unknown gene 0.0756533454856482 0.800940903526236 0.440304536873465 1 -0.295145169017822 5.77190612205865 0.0756533454856482 0.0800521098605378
AT4G21610_at 5.3521204524993 5.79501374279853 5.20001226757068 6.15614298292863 5.13420409169533 4.90490730591359 4.09485727427277 4.56626111758987 4.17653381583433 4.42941811386983 3.42865870928076 3.74673944572608 3.74417074373952 3.75069986566532 3.65070769089293 3.85769173599486 3.76696938384572 4.32935744884619 4.64707551559482 0.244261087886816 0.238418016920505 0.251302844239057 0.25172398731893 0.233778414596151 0.253600671287161 0.244223504953380 0.233978474199804 0.233628891513587 0.232546563679075 0.233682188040499 0.230792776550287 0.236605372715042 0.232118106536656 0.233687225960416 0.233050579379119 0.23732895375334 0.253100398259569 0.230792776550287 4 4|0 +|/ 11489166 11490245 11489830.6 11488988 11490410 + gene protein_coding_gene FALSE TRUE AT4G21610.1 LOL2 (LSD ONE LIKE 2); transcription factor Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains. similar to LOL1 (LSD ONE LIKE 1) [Arabidopsis thaliana] (TAIR:AT1G32540.1); similar to zinc finger protein LSD2-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61218.1); similar to zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:CAF05903.1); similar to Os01g0612700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043558.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735); contains InterPro domain Flavocytochrome C3, N-terminal cytochrome; (InterPro:IPR012286) -0.118273960931898 -0.800772107116764 0.440398202611307 1 -0.295273912291001 9.25146500095788 -0.118273960931898 0.203671371749666
AT2G24400_at 1.16385697708296 1.24894939059535 1.32510583095406 1.17735229840016 1.23064656695122 0.751478556859138 1.26976608292057 1.16894731977357 1.25173718032012 1.60282883147845 1.54946585367375 1.57249951237302 1.70204898796031 1.29908556064541 1.15795754330341 1.04890292062779 1.47252911835347 1.67968636076248 1.64497614691339 0.186228435632068 0.183760867600202 0.184480962834451 0.193703602141042 0.190783230791951 0.185448765872151 0.185756153127954 0.196764303200303 0.188732178245904 0.189385613357414 0.185273190459064 0.186041715532318 0.192249971427430 0.184457405289511 0.186903636971364 0.184019216737826 0.183155261156257 0.191553898451185 0.19249755780808 2 2 - 10385105 10385408 10385266.818 10384871 10385666 - gene protein_coding_gene FALSE TRUE AT2G24400.1 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) similar to auxin-responsive protein, putative / small auxin up RNA (SAUR_C) [Arabidopsis thaliana] (TAIR:AT4G31320.1); similar to Os04g0608300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053812.1); similar to auxin-induced protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD13235.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.0781547666634183 -0.800765708087473 0.440401753712648 1 -0.295278792446121 2.63457256216702 -0.0781547666634183 0.089728172345014
AT1G65730_at 3.37635550738746 2.89703016700421 3.47055634786048 3.34655728982243 2.96857137441999 2.66531995581517 3.03603124463282 2.34115336128800 3.27317274589728 3.77259883466922 3.06770846416841 2.98819075395487 2.83301027647773 3.1933729843492 3.22909932757563 2.73174579461069 3.62959498510976 3.46349599833125 3.58045651660765 0.248782885318274 0.242026640238687 0.244801623390488 0.250494250185890 0.244000781988459 0.243205540757327 0.24577302182387 0.236583653438072 0.241532798922150 0.235646407316532 0.235262317411554 0.245634740197580 0.239972563177167 0.236448377020288 0.239382930903964 0.239761035145121 0.243202491269233 0.242260143454342 0.235872579046963 1 1 + 24449201 24449732 24449445.636 24446167 24449954 + gene protein_coding_gene FALSE TRUE AT1G65730.1 YSL7 (YELLOW STRIPE LIKE 7); oligopeptide transporter Arabidopsis thaliana metal-nicotianamine transporter YSL4 similar to YSL8 (YELLOW STRIPE LIKE 8), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G48370.1); similar to YSL6 (YELLOW STRIPE LIKE 6), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G27020.1); similar to YSL5 (YELLOW STRIPE LIKE 5), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G17650.1); similar to YSL transporter 1 [Thlaspi caerulescens] (GB:ABB76761.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE44205.1); similar to YSL transporter 2 [Thlaspi caerulescens] (GB:ABB76762.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.0999700187088967 -0.800581055541668 0.440504233572137 1 -0.295419601059925 6.3547485837606 -0.0999700187088967 0.156702430861191
AT2G35470_at 5.12605608140786 5.7656871374124 4.85495932962406 5.04257756119524 5.36711426518019 5.77187989359875 5.93416564712104 6.15016777621665 6.20197696896366 5.51977286138522 6.89938948128289 6.23087953576604 6.30430136160401 6.50117993219626 5.75128434919846 5.97170892206453 5.28397719151492 6.06809469728182 5.76639696712017 0.206410823772653 0.202650140667434 0.209489307966025 0.197553833437280 0.205179109168387 0.205048664150001 0.215251045515372 0.199032507154283 0.199325157547939 0.207857397786283 0.201570133684438 0.195667158804040 0.200136951648513 0.207341719754618 0.195667158804040 0.195667158804040 0.201046116558979 0.198813829334629 0.199515756759976 2 2|0 -|/ 14916128 14916762 14916519.9 14915923 14916942 - gene protein_coding_gene FALSE TRUE AT2G35470.1 similar to unknown [Solanum tuberosum] (GB:ABC01887.1) -0.0939583650496651 -0.800549401451722 0.440521802765838 1 -0.295443736327295 11.4794430613128 -0.0939583650496651 0.140037542929177
AT2G24200_at 11.6116388556987 11.6636371389883 11.7251721739612 11.7004410959271 11.3329781251355 11.2907338599061 11.4332051266025 11.3622385593537 10.8291569428312 11.3364903007857 11.2023162593099 11.1541525393596 11.1524135024504 11.1981294569072 11.1646969290670 11.1445545224365 11.2499045016694 11.364640867433 11.03735651485 0.0615232658289551 0.0594945526681198 0.060201706186556 0.0604227554853064 0.0597553776863843 0.0608006595733351 0.061263747133116 0.0607040626011201 0.0698200772947187 0.0607130377493892 0.0594945526681198 0.0594945526681198 0.0603320196204464 0.0616067554200965 0.0608753299360241 0.0594945526681198 0.0609560619840872 0.0595524572685978 0.0648619286856251 2 0|2 /|- 10294124 10294941 10294519.444 10293886 10296635 - gene protein_coding_gene FALSE TRUE AT2G24200.1 cytosol aminopeptidase Identical to Leucine aminopeptidase 1 (EC 3.4.11.1) (LAP 1) (Leucyl aminopeptidase 1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1) (PM25) [Arabidopsis Thaliana] (GB:P30184); similar to cytosol aminopeptidase family protein [Arabidopsis thaliana] (TAIR:AT4G30920.1); similar to cytosol aminopeptidase family protein [Arabidopsis thaliana] (TAIR:AT4G30910.1); similar to neutral leucine aminopeptidase preprotein; preLAP-N; metallo-exopeptidase; leucyl aminopeptidase; LAP [Lycopersicon esculentum] (GB:AAO15916.1); similar to Leucine aminopeptidase 2, chloroplast precursor (LAP 2) (Leucyl aminopeptidase 2) (Proline aminopeptidase 2) (Prolyl aminopeptidase 2) (GB:Q6K669); similar to Cytosol aminopeptidase family, catalytic domain, putative [Medicago truncatula] (GB:ABE88725.1); contains InterPro domain Peptidase M17, leucyl aminopeptidase, N-terminal; (InterPro:IPR008283); contains InterPro domain Peptidase M17, leucyl aminopeptidase, C-terminal; (InterPro:IPR000819); contains InterPro domain Peptidase M17, leucyl aminopeptidase; (InterPro:IPR011356) 0.065417273205945 0.800533335632936 0.440530720066646 1 -0.295455985697278 22.6507651128557 0.065417273205945 0.0174229861882469
AT4G33905_at 0.623110673262173 0.585663316074561 0.558590518131235 0.48149989845746 0.78946345964191 0.630647989574339 0.70693874914863 1.18974402601832 0.411522809176317 0.892364650936423 0.722931867840406 0.265886401511517 0.911932546914784 0.609287099439709 0.763531041172774 0.53790647110364 1.12227017706987 0.898058969766495 0.866981231327437 0.219836789737788 0.224309200087719 0.221588249101749 0.221427422224587 0.220992195566829 0.22480251955208 0.224837681418605 0.246203837656528 0.219836789737788 0.235493959581497 0.22178803167336 0.223501424100055 0.227411065532515 0.222567591199205 0.226009842248845 0.219836789737788 0.226246752218948 0.225456487065834 0.225415272740001 4 4|0 -|/ 16254125 16255355 16254832.25 16253820 16255617 - gene protein_coding_gene FALSE TRUE AT4G33905.1 peroxisomal membrane protein 22 kDa, putative similar to peroxisomal membrane protein 22 kDa, putative [Arabidopsis thaliana] (TAIR:AT2G14860.1); similar to hypothetical protein DDBDRAFT_0189006 [Dictyostelium discoideum AX4] (GB:XP_635703.1); similar to Os12g0508100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066849.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) -0.0779805249845066 -0.800447913406613 0.440578135489786 1 -0.295521112167544 1.42200656328814 -0.0779805249845066 0.0891976446394456
AT2G01980_at 6.6095891784337 6.92190717610437 6.86457642547772 6.7187946923881 6.76553266453952 6.56740356166261 6.59111461071221 6.75463456221418 6.62345941885589 6.41733238279895 6.2680916774546 6.46450883417713 6.19511285345172 6.38797252035946 6.19735605715582 6.37724234094936 6.67691327435485 6.39754803467891 6.54540932819886 0.189235864176351 0.185210261930873 0.191831338170075 0.196338005673541 0.194260907783625 0.201689812845612 0.189948299997671 0.190046379731232 0.198461445576567 0.201621513646397 0.189366203130656 0.193913377751253 0.190426394627551 0.192858790365309 0.192870864252097 0.193250379920107 0.198372335686141 0.185210261930873 0.191488302162403 2 2 + 462452 463005 462743.727 457009 463325 + gene protein_coding_gene FALSE TRUE AT2G01980.1 SOS1 (SALT OVERLY SENSITIVE 1); sodium:hydrogen antiporter Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. Identical to Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7) (NHE-7) (Protein SALT OVERLY SENSITIVE 1) (NHX7) [Arabidopsis Thaliana] (GB:Q9LKW9;GB:Q9ZPS6); similar to ATNHX8 (Arabidopsis thaliana Na+/H+ exchanger 8), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G14660.1); similar to putative plasmalemma Na+/H+ antiporter [Solanum lycopersicum] (GB:CAG30524.1); similar to Na+/H+ antiporter [Populus euphratica] (GB:ABF60872.1); similar to putative Na+/H+ antiporter [Suaeda japonica] (GB:BAE95196.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.0741875283638156 -0.799963426267336 0.440847123630599 1 -0.295890372610581 13.1738575634535 -0.0741875283638156 0.0743911179165723
AT3G61250_at 0.754642602271379 0.70866525864659 0.461938904821478 0.638580129046995 0.889116310199518 0.507570205826492 0.517594479055125 0.368108350370450 0.998841510645802 1.21716594913833 0.99870602199119 1.07751166534533 1.16735630700191 0.831189248780473 1.08013988169540 0.6133253174549 0.978952119158356 1.02641606890664 1.25997656791394 0.205486795470199 0.203719116832622 0.213191789536338 0.208609695737460 0.203719116832622 0.219587229433157 0.207995583786003 0.216960372064731 0.210457485268873 0.214628206014567 0.203719116832622 0.209410691907831 0.210903645487877 0.208932766612608 0.208681745536114 0.211717228228691 0.21075189467191 0.218065164517959 0.209486940812208 3 3 + 22682985 22683496 22683265.222 22681977 22683713 + gene protein_coding_gene FALSE TRUE AT3G61250.1 AtMYB17 (myb domain protein 17); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMIXTA/AtMYB16 (myb domain protein 16) [Arabidopsis thaliana] (TAIR:AT5G15310.2); similar to MYB14 [Malus x domestica] (GB:AAZ20433.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0749565244432576 -0.799877445057464 0.440894871790234 1 -0.295955884145249 1.67095749070865 -0.0749565244432576 0.0776318613198414
AT2G01920_at 0.93116989942918 0.749299034065234 0.951120707499646 0.452787788745499 0.265046852041348 1.08063837274661 0.281998623953619 0.593158155541007 1.21697252057201 0.180761946947043 0.78392794465141 0.632413004647674 0.575851740153251 0.540721422825422 0.875482448260162 0.675749128541921 0.77895098142143 0.751481572232944 0.209522214271165 0.206870429182055 0.206870429182055 0.209406026592711 0.215229148723468 0.209838485791519 0.208326120691577 0.219290331652673 0.206870429182055 0.210465224298446 0.222133256959519 0.20944578967873 0.210148326795938 0.212541879077288 0.209554585222232 0.208055617909542 0.206870429182055 0.212240521138680 0.211685827634282 0.208336749276873 2 2 + 426442 426963 426753.182 426051 426989 + gene protein_coding_gene FALSE TRUE AT2G01920.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related Identical to Clathrin assembly protein At2g01920 [Arabidopsis Thaliana] (GB:Q9SHV5;GB:Q4PSW4); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT1G14686.1); similar to Phosphoinositide-binding clathrin adaptor, N-terminal [Medicago truncatula] (GB:ABE85736.1); similar to Os09g0449500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063322.1); similar to Os08g0467300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062002.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.107281027544693 0.798445149997546 0.441690769811009 1 -0.297046278525423 1.28193968305536 0.107281027544693 0.176771971331182
AT2G38810_at 2.73102027446425 2.90099439252409 2.98508392754244 2.98700710256725 2.44971731351466 2.78836998314892 2.67884441177413 3.11547619564212 3.44819683148002 3.32767327597498 3.47601323313621 3.70222911630456 3.07818173920972 3.44068642752706 3.70767981617228 3.25085766455380 3.2441364803012 3.34979369357684 2.79575361479265 0.160601694176425 0.160591842792593 0.167844027032570 0.165554618596379 0.163369947716781 0.160591842792593 0.163229258588324 0.160763661382603 0.177214294270315 0.162297063172462 0.160591842792593 0.160591842792593 0.167200069259322 0.160591842792593 0.164108726882746 0.160591842792593 0.170579603315178 0.160591842792593 0.162574142752758 2 2 - 16226530 16227721 16226860.182 16226363 16228006 - gene protein_coding_gene FALSE TRUE AT2G38810.1|AT2G38810.2|AT2G38810.3 histone H2A, putative Identical to Probable histone H2A variant 2 (H2A.F/Z 2) (HTA8) [Arabidopsis Thaliana] (GB:Q9SII0); similar to histone H2A.F/Z [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to Os03g0162200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049049.1); similar to Os10g0418000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064611.1); similar to H2A protein [Oryza sativa] (GB:AAF07182.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0808083968453315 0.798337854585772 0.441750429574393 1 -0.297127892334660 6.1279334561957 0.0808083968453315 0.100047127105926
AT3G46910_at 0.534925398676289 0.468016887776006 0.330597183918011 0.130322644986005 0.77433385942949 0.430217694204445 0.454265978946414 0.389442288468438 1.06504585864920 0.672915394081173 0.448970214364799 0.6407016133778 0.678978261967901 0.738115725691184 0.525337838566486 0.720559050659155 0.783463502244 0.759549455789444 0.551206650764885 0.178899542713508 0.176382686771903 0.176998556465628 0.182518969880189 0.180355859275348 0.179238107721083 0.179606289303022 0.178757130790007 0.189831953951058 0.180883954476940 0.179430299564158 0.182170770207179 0.182401279495537 0.185131905281902 0.178257883875407 0.177920809360371 0.176763345468365 0.186581493038042 0.181890632587218 3 3 + 17290026 17290540 17290281.455 17289621 17290637 + gene protein_coding_gene FALSE TRUE AT3G46910.1 similar to CUL4 (CULLIN4), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G46210.1); similar to putative cullin protein [Olea europaea] (GB:AAL27655.2); contains InterPro domain Cullin; (InterPro:IPR001373) -0.0731956514157272 -0.79830355430739 0.441769502764634 1 -0.297153980660929 1.15152295488281 -0.0731956514157272 0.0707632107550659
AT1G79940_at 8.17794789410255 8.37752166496244 8.37651479419063 8.04832864198693 8.1997329398847 8.04199306602586 7.97760375830862 7.76211420150624 7.59242979507507 8.00798266376174 7.68859344498231 8.07836502083745 7.73493892575144 7.95676271631552 7.9036187058017 7.73701439482434 7.88865183990378 7.78373060492748 7.76373058948249 0.142181470261852 0.142064265664447 0.134243819287985 0.137472131409521 0.140168668244990 0.135734182635912 0.146549884808711 0.141329849945540 0.148494014713968 0.138091633978137 0.145472993486711 0.137852964147165 0.134243819287985 0.139112095088169 0.144898761790919 0.136764913195228 0.149698302544903 0.135783951058907 0.142450565197948 1 1 + 30077574 30077903 30077735.636 30074497 30078232 + gene protein_coding_gene FALSE TRUE AT1G79940.1|AT1G79940.2 heat shock protein binding / unfolded protein binding similar to DNAJ heat shock N-terminal domain-containing protein / sec63 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21180.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL53183.1); similar to Os04g0307200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052421.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Sec63; (InterPro:IPR004179); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.0756286273484856 0.798283925555791 0.441780417872147 1 -0.297168909578822 15.9374731898415 0.0756286273484856 0.0809580453365102
AT3G42100_at 1.39522818979463 1.74826120211080 1.99007263637539 1.52070906176945 1.08922572951192 1.39317673971419 1.18295234468427 1.51979690925320 1.90050877228821 1.85175934616187 1.48409485675658 1.31403034487977 1.36546011245919 1.76849611711801 1.53648104423860 1.32933059951908 2.02578579740825 1.71703053267640 1.59878833835393 0.190814396060806 0.191344312099053 0.190339025165188 0.188014269349435 0.201118289951318 0.191428000656303 0.190042521126835 0.187314223277977 0.201770019283651 0.202577107005092 0.193922610142463 0.198709365812483 0.192591945598763 0.194133517322526 0.193119391813823 0.190585742474837 0.187314223277977 0.190785782364354 0.209864742807383 3 3 - 14286250 14286664 14286450.909 14286145 14292264 - gene protein_coding_gene FALSE TRUE AT3G42100.1 AT hook motif-containing protein-related similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13250.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30560.1); similar to Protein of unknown function DUF889, eukaryote [Medicago truncatula] (GB:ABE82731.1); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAV44035.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE80108.1); contains InterPro domain Protein of unknown function DUF889, eukaryote; (InterPro:IPR010285); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.0896802147936683 -0.797993197030847 0.441942106126484 1 -0.297389989305259 3.15556493226839 -0.0896802147936683 0.128432323777456
AT4G39970_at 9.76549767622487 9.55923499286957 9.37075977386079 8.95221455065781 9.793363454274 9.36321741235138 10.2498090758973 9.93612098456776 10.3191002541554 10.3396459875154 10.7609225476499 10.8220689023689 10.5019114734037 10.7729508417800 10.6888827713733 10.8117369792253 10.3169829119184 10.6056311392992 10.3245851238414 0.0875392726880306 0.0875392726880306 0.0925403055412296 0.100478891674905 0.0881791692050586 0.0936633516434652 0.0897746899086789 0.0901915823894288 0.0967085713835596 0.0875392726880306 0.0883539178666152 0.0877627500951985 0.089357540476206 0.0883482020801818 0.092524114600241 0.0875392726880306 0.089632693591853 0.0913473901015106 0.0875392726880306 4 4|0 -|/ 18536840 18538006 18537414.25 18536532 18538500 - gene protein_coding_gene FALSE TRUE AT4G39970.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G48420.1); similar to Os08g0485900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062091.1); similar to Predicted haloacid-halidohydrolase and related hydrolases (ISS) [Ostreococcus tauri] (GB:CAL53722.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.0877090302819648 -0.79790498445763 0.44199117307577 1 -0.297457055077373 20.1177337739453 -0.0877090302819648 0.122508797473197
AT4G34830_at 7.58901519691671 7.34855186147851 7.45856315839308 7.04377071015893 7.28444631742384 7.23440299228876 7.92251890320845 7.83116398933565 6.78708543922103 6.6958587070234 6.79923985381563 7.65114786564728 7.42328899413455 7.22072066312588 7.53197365058538 7.45649720044652 7.38822757148706 6.77260707809795 6.64639205303661 0.132317353759152 0.133898224076826 0.135775503636258 0.134564477607403 0.133874101708739 0.137466133581359 0.135799155499031 0.134953252687722 0.141946499509540 0.136661872125155 0.134162320654005 0.13164404609055 0.134823978505151 0.133533536409962 0.132942733054232 0.131686884023588 0.140039708541596 0.136153664572552 0.137127758876133 4 4|0 -|/ 16600007 16603267 16602006.842 16599610 16606014 - gene protein_coding_gene FALSE TRUE AT4G34830.1 binding similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to Putative crp1 protein [Oryza sativa (japonica cultivar-group)] (GB:AAL76193.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65945.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP52447.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0765837167025838 0.797735316918762 0.442085558170379 1 -0.297586030620587 14.4591749375311 0.0765837167025838 0.084907158595868
AT1G44050_at 1.27567977218965 1.54732480040767 1.24446338838659 2.11524600489109 1.01113510948386 1.23730004378953 0.972110791713724 1.20110625276035 1.86907500949532 1.36362979493265 1.14425504796294 1.01977675207484 1.44720037381883 1.22120372053439 1.23728339911146 1.41399250191913 1.29292793370616 1.62162229091403 1.74705962245815 0.186549909661693 0.191606715147126 0.189760685080680 0.190333784337289 0.184809553073430 0.190046677072063 0.184447822480489 0.192380515304008 0.189127767414565 0.191500927888775 0.190365220289272 0.193307373913226 0.190603253901468 0.187373196592378 0.198364419780557 0.188308463232328 0.185961769909148 0.191803833133248 0.185617974875734 1 1 + 16743357 16743909 16743658.818 16742361 16743953 + gene protein_coding_gene FALSE TRUE AT1G44050.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55780.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10370.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G26550.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.103578995376782 -0.797547577828184 0.442190011726828 1 -0.297728715383724 2.80539788451977 -0.103578995376782 0.167393414318692
AT4G36150_at 5.9494623793587 6.26180438883082 5.55421110535018 5.75108367821199 5.39108434583681 4.74993717012029 4.09371348384876 4.23098535125561 5.27699369554115 4.67706545296966 4.66753299732921 4.75197459096998 4.04406959208441 5.27872437983944 3.95972931785963 4.73053647185725 4.0411590382838 4.64146646529528 4.81310854143902 0.252638771333531 0.258432795160931 0.249662841786379 0.262499904917775 0.245674390626465 0.256732580792049 0.247001348587306 0.251124359755308 0.26594821642488 0.252766795916162 0.250343052570622 0.249138957289293 0.266842649853876 0.248660312100493 0.250031783344586 0.247594025991132 0.257891681261969 0.271207691629945 0.247634861009678 4 4 + 17108115 17108648 17108356.182 17104779 17108714 + gene protein_coding_gene FALSE TRUE AT4G36150.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G17060.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45200.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.0902012246185306 -0.797280371624222 0.442338706716978 1 -0.297931745415071 9.96617940618822 -0.0902012246185306 0.130220570935342
AT1G06900_at 6.78415336668378 6.64103989939084 6.36188990285693 6.30561367319618 6.9013216977282 6.6548644316146 7.11787708131668 6.57678259189713 6.41497606906676 7.05102727898552 6.88855050493757 7.34788202278531 6.6238521675637 6.79904945394634 7.183340228754 6.90319779506264 6.95789868278751 6.76946015216254 7.15901430591303 0.187862952176706 0.183274873719855 0.189819024836431 0.192626047725507 0.187411140614940 0.185738899201313 0.193038306817403 0.194549918072976 0.20636160639247 0.190606679718319 0.191821006599112 0.190677602820262 0.186751995657303 0.18627842145278 0.197329717376906 0.186933543036765 0.191351037765326 0.189490365466779 0.186165220353447 1 1|0 -|/ 2115185 2116007 2115602.4 2114930 2120744 - gene protein_coding_gene FALSE TRUE AT1G06900.1 metalloendopeptidase similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT2G41790.1); similar to PREDICTED: nardilysin (N-ar (GB:XP_001140801.1); similar to Os03g0336300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050040.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) -0.0824464085641399 -0.796353682091248 0.442854644400002 1 -0.298635403019958 13.5725227109131 -0.0824464085641399 0.106280491384960
AT1G41770_at 4.27286042267357 3.89782132790451 4.47148622944114 3.91103147708709 4.03408049172017 4.2872794978291 4.28450076882103 4.41671644386888 5.35735408268695 5.12913547602594 5.02815743733017 5.11819972027806 4.34203935454339 5.30613895496978 4.95760854044019 5.22543801029668 5.30570504521951 5.25288581922798 5.12210618957126 0.203554507440227 0.201977917101039 0.200932004839000 0.210745512873463 0.216104765402168 0.203943691162077 0.211755749382907 0.220642409024672 0.200623247312357 0.204028134720620 0.206763121412634 0.200623247312357 0.200623247312357 0.210712357978302 0.206464085915088 0.200992442553118 0.201913010702069 0.211745215183384 0.207012032052727 1 0|1 /|+ 15539788 15539949 15539853.8 15539662 15539973 + gene protein_coding_gene FALSE TRUE AT1G41770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33064.1) -0.0889244779687257 -0.796292501652685 0.442888720656521 1 -0.298681833413860 9.33191551227632 -0.0889244779687257 0.126738715749749
AT4G32250_at 7.51103374231492 7.49854374064322 7.80862764576006 7.55366561944693 8.04379781152622 7.878559994182 7.69994257244692 7.7290901743658 7.54912507160758 7.720584070733 7.6526521431801 7.32977399359005 7.97646076348796 7.27441575825522 7.30454307730019 7.79630549857869 7.90599682643057 7.62485385855699 7.77306765988565 0.156056535318423 0.152807894779066 0.163331746009871 0.155210115133613 0.153960674154873 0.159701928057061 0.153191278286574 0.157306159357231 0.162484437890018 0.149604817983321 0.149604817983321 0.155030466236125 0.153856555997540 0.159950948486399 0.155680018395994 0.15563756157257 0.158101022092742 0.152665331011357 0.149980619862230 4 4 - 15570318 15570843 15570614.273 15570050 15573329 - gene protein_coding_gene FALSE TRUE AT4G32250.1|AT4G32250.2|AT4G32250.3 protein kinase family protein|kinase similar to KEG (KEEP ON GOING), protein binding / protein kinase/ ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G13530.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABE94418.1); similar to Protein kinase; Zinc finger, RING-type [Medicago truncatula] (GB:ABE84394.1); similar to Os06g0639500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058160.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0693549247332415 0.79590075840138 0.443106954254715 1 -0.298979056417928 15.3599330829180 0.0693549247332415 0.0528638106459998
AT4G20210_at 1.34598375317171 1.32987451488187 1.49588343683893 1.75371598138842 1.10336814947710 1.59507432533094 1.54341768950270 1.3663639273215 2.17587611711452 1.51449841870853 1.75264076498747 0.757637219270398 1.71343448277242 1.59413839120235 1.67716546316601 1.47971080553941 1.27615412230062 2.17934194469313 1.72754515885951 0.193329130143834 0.194405803147142 0.201424489454876 0.195822811426824 0.201891593346932 0.201701798349073 0.195971081362531 0.194693486639685 0.202411171776641 0.201267825708197 0.199581425232414 0.195291809339466 0.193549630553848 0.202388049298412 0.193329130143834 0.199763386588790 0.19540997244416 0.204455374422055 0.198573368342163 4 4 - 10913633 10914690 10914195.727 10913623 10918292 - gene protein_coding_gene FALSE TRUE AT4G20210.1 terpene synthase/cyclase family protein similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20200.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20230.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G66020.1); similar to Casbene synthase, chloroplast precursor (GB:P59287); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.0807974151399877 -0.795824836082022 0.443149257429646 1 -0.299036645200067 3.12158578764031 -0.0807974151399877 0.100886583605603
AT1G22670_at 0.69254197728079 1.06625374883957 1.16057922257126 1.01036723241604 0.917688085865581 0.655396115692471 1.19871369703266 0.680398482319096 1.1081208302896 1.25483604231511 0.872461519793993 0.853028126897237 1.58969668186933 0.53502417080416 0.79568920626571 0.930836747603136 1.10439107204089 1.10889743882854 1.16168363783829 0.244517103379213 0.247359909341463 0.247658315164582 0.244517103379213 0.247576483160135 0.267851279682124 0.244517103379213 0.253792728039560 0.246942128042730 0.26595915639791 0.244517103379213 0.24622245334144 0.249948648503822 0.245426547302276 0.254320449957096 0.244517103379213 0.244931207052265 0.249954947710569 0.257081593051700 1 1 - 8021866 8022495 8022198.364 8021843 8023505 - gene protein_coding_gene FALSE TRUE AT1G22670.1 protease-associated zinc finger (C3HC4-type RING finger) family protein similar to protease-associated zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G71980.1); similar to ReMembR-H2 protein JR702, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94173.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0872981809332425 -0.794702801916792 0.443774751391894 1 -0.299887168486469 1.99705896558246 -0.0872981809332425 0.122327967005602
AT1G09800_at 2.24570970223402 2.34553890524566 2.56904707372137 2.80332264078143 2.08459587862434 2.46074911208496 2.67817751943753 2.78558744288006 2.12543871012049 2.62926166064432 2.20705291872698 2.23657463534129 2.07168213382149 2.1675196964011 2.60972644566236 2.33330591650418 2.59830902423536 2.30159162971746 2.54087779010737 0.248599273157587 0.249932315159373 0.246344094433017 0.248510501025765 0.248020256114993 0.246074222463299 0.249097160858343 0.246074222463299 0.251468794615337 0.248999769549415 0.246074222463299 0.247853170758973 0.255565788835599 0.255085861228842 0.258022167895165 0.251211728239905 0.250472390654787 0.251272080299305 0.246074222463299 1 1|0 -|/ 3177092 3178863 3177981.111 3176885 3180423 - gene protein_coding_gene FALSE TRUE AT1G09800.1 tRNA pseudouridine synthase family protein similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G06950.1); similar to Os12g0194800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066352.1); similar to tRNA pseudouridine synthase [Medicago truncatula] (GB:ABE79574.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) -0.0752319015262067 -0.794571328418585 0.443848080864996 1 -0.299986758641756 4.87038087788051 -0.0752319015262067 0.0807776198347571
AT4G17360_at 5.28722107141475 5.42407341239273 4.87966314464212 5.11487325443934 6.08154311632343 4.72711486613103 7.55289507615598 6.90238999955657 4.32866144499549 5.87463154045006 6.19040347430077 6.06432396436681 5.96176934102048 6.9338656378173 6.19840792858263 6.73134761331622 5.30423220168526 5.54554552157843 5.72882405253531 0.225020637289492 0.226970310328545 0.217808249669174 0.223799517841090 0.218055925304441 0.230773816562691 0.218477482408301 0.227941964508948 0.235200135215347 0.216895639065996 0.214130316839991 0.221271623156991 0.216273836253458 0.22044312803095 0.217314944307039 0.214130316839991 0.239331126244803 0.223645053050658 0.214434623129391 4 4|0 -|/ 9703732 9704807 9704299.778 9703559 9705480 - gene protein_coding_gene FALSE TRUE AT4G17360.1 formyltetrahydrofolate deformylase, putative similar to formyltetrahydrofolate deformylase, putative [Arabidopsis thaliana] (TAIR:AT5G47435.1); similar to formyltetrahydrofolate deformylase, putative [Brassica oleracea] (GB:ABD64983.1); contains InterPro domain Formyltetrahydrofolate deformylase; (InterPro:IPR004810); contains InterPro domain Formyl transferase, N-terminal; (InterPro:IPR002376) -0.142657506744746 -0.794556361556013 0.443856429148584 1 -0.299998095002761 11.4596930624622 -0.142657506744746 0.264251983957106
AT2G39390_at 7.43272862037331 7.34457928873329 7.44429535197882 6.99699598997428 7.36706911607698 6.85286031797872 7.27947922333415 7.59457798632883 6.92140746898041 7.32417343577784 7.53668603198839 7.9774322420804 7.01622328246899 7.10771858652679 7.8042486057298 7.12268503651377 6.18073636452942 6.70819025660287 7.09730872907854 0.194123802008568 0.188146344347107 0.189628391192853 0.191797661842693 0.183120222397519 0.186753613569861 0.184484291884097 0.184917128891500 0.208428609077333 0.18871749052618 0.189827078526113 0.189791928504625 0.199641131684842 0.184124828639830 0.194134841796577 0.188806088436894 0.191632355210779 0.190221756953761 0.189024635103185 2 2|0 -|/ 16457881 16458708 16458397.889 16457738 16458956 - gene protein_coding_gene FALSE TRUE AT2G39390.1 60S ribosomal protein L35 (RPL35B) Identical to 60S ribosomal protein L35-2 (RPL35B) [Arabidopsis Thaliana] (GB:O80626); similar to 60S ribosomal protein L35 (RPL35D) [Arabidopsis thaliana] (TAIR:AT5G02610.1); similar to 60S ribosomal protein L35 (GB:Q9M5L0); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.0900462897487035 -0.794097785770062 0.444112265262512 1 -0.300345343083903 14.4370915345560 -0.0900462897487035 0.130830349331760
AT1G09250_at 5.59914438388582 5.47860379534568 4.33863900421728 4.21042879626831 5.69700090925498 4.9117819543644 4.8721702228887 4.82806309401198 5.73355507216029 4.26797896553788 5.77037088294058 5.67706210861809 6.414413970466 5.71309805449939 5.82180092906262 5.94545970307322 5.78153609932451 5.41895687847448 5.67911944817519 0.209068090357162 0.213906000097593 0.21801728086589 0.213349099843159 0.215327756900115 0.211692911363521 0.218443995794764 0.210548368623565 0.231261711595215 0.216050971610478 0.229153287908444 0.209645741142424 0.209068090357162 0.21918116401392 0.221229803105052 0.209068090357162 0.215168954717929 0.219218147864386 0.216348814768940 1 1 + 2989594 2990064 2989806.818 2989380 2990359 + gene protein_coding_gene FALSE TRUE AT1G09250.1 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06590.2); similar to Os03g0311600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049922.1); similar to bHLH protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21355.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0929600625047214 0.793738677568959 0.444312676274614 1 -0.300617147705069 10.5143399318289 0.0929600625047214 0.139465540226703
AT1G67770_at 1.89029777776778 1.96678213525958 2.31924851872274 1.73495756114524 1.65491093966136 2.14915128126488 1.59447125871246 1.95756124363187 2.00773601040487 2.74704319070932 2.12437499928268 1.95917787563542 1.74205939101718 1.94567521540053 2.41347952224659 1.94212823418550 2.32723111815636 2.35368919169069 2.45904053162790 0.225954691357792 0.228829987964934 0.234394739345058 0.237818088416339 0.229516633747761 0.224397963532458 0.22878302178524 0.231011907931557 0.223407867159347 0.223839650147346 0.224078950514250 0.223407867159347 0.228775836888779 0.229144028448639 0.224407842362305 0.223725712733541 0.223560375485292 0.236448382861025 0.224222566979803 1 0|1 /|+ 25413204 25413727 25413542.125 25411706 25413816 + gene protein_coding_gene FALSE TRUE AT1G67770.1 TEL2 (TERMINAL EAR1-LIKE 2); RNA binding Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL2 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. Expression patterns were similar to TEL1, with lower expression levels in most tissues examined. similar to TEL1 (TERMINAL EAR1-LIKE 1), RNA binding [Arabidopsis thaliana] (TAIR:AT3G26120.1); similar to Os01g0907900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045139.1); similar to leafy head 2 [Oryza sativa] (GB:ABD49441.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0956703313866 -0.79368959373266 0.444340073550327 1 -0.300654290237433 4.16121435003702 -0.0956703313866 0.147183335692563
AT2G35770_at 1.26112230347569 1.12152258923547 1.62899234969924 1.18677409230043 1.47651977879082 1.34510473401950 1.58740930167514 1.33018229202885 1.47947527760945 1.73468674442734 1.73408152684531 1.83252090274525 1.4763909048303 1.88293337554648 1.78313354000657 1.41315420551871 2.33578087940019 1.9854003377534 1.98256335855599 0.253564179655521 0.245561743053082 0.266589466667725 0.250247416218254 0.24566420500289 0.254729937255413 0.240622277336125 0.240622277336125 0.256032286177536 0.253743550117613 0.240786713928372 0.251775441367010 0.241184247948056 0.240622277336125 0.246995129307215 0.240622277336125 0.251174556441567 0.259063616632551 0.243651617162149 2 2 - 15041325 15041980 15041644.364 15041116 15043597 - gene protein_coding_gene FALSE TRUE AT2G35770.1 SCPL28 (serine carboxypeptidase-like 28); serine carboxypeptidase similar to SCPL27 (serine carboxypeptidase-like 27), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G07990.1); similar to putative serine carboxypeptidase II [Oryza sativa (japonica cultivar-group)] (GB:AAV43957.1); similar to Os01g0833500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044713.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.07873564132428 0.79324406692533 0.444588804997452 1 -0.300991334897678 3.13603655645899 0.07873564132428 0.0945456271102988
AT2G05000_at 1.80121011947714 1.51313374449181 1.89966440126365 1.90512905265374 1.37579123789510 1.33518546561910 1.51360523469544 1.38846666590540 1.58132288589231 1.65058182219258 1.56663259165083 1.17485473321685 1.43596651570189 1.66787232799803 1.62461092794647 1.20040164489647 1.50456202125541 1.89510782280248 1.93569830139019 0.225784373147192 0.223735137659104 0.221360837697598 0.221082122765182 0.228969118392599 0.235018625126303 0.226748303039555 0.223227156860269 0.238415735685989 0.225339827519983 0.225778495972214 0.233710823584978 0.226016931773255 0.232453257313657 0.224290275835347 0.230406382377047 0.226853493532107 0.232214769167905 0.231711099728510 2 2 - 1761821 1762206 1761958.625 1761801 1762375 - gene protein_coding_gene FALSE TRUE AT2G05000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47320.1) -0.0694723325463438 -0.793226487328917 0.444598621303884 1 -0.301004630581425 3.2071659450878 -0.0694723325463438 0.0548139141155296
AT2G36880_at 9.62070963706883 9.6430140901524 9.6261021216373 9.73607194196031 9.33076738720304 9.15628449174029 10.7233012467738 10.9307246369891 9.65278341297554 10.0235831189354 10.7034915146917 11.0552127162052 10.6226596254132 10.7019378841461 10.8844039939391 10.6405946063287 10.5223339717011 10.5541406171197 9.74150594469613 0.113448025957758 0.100671538184841 0.103797175735334 0.101437188701203 0.102152399529238 0.112942367292655 0.104730902174426 0.100645442549442 0.115623312984711 0.101377837266305 0.102462806529357 0.102528879883802 0.0982213231386006 0.106754485131601 0.102977732857657 0.102774181648685 0.104031086193445 0.103272414675818 0.0982213231386006 2 2 - 15486800 15487313 15487083.727 15486445 15488491 - gene protein_coding_gene FALSE TRUE AT2G36880.1 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT3G17390.1); similar to MAT2/SAM-2 (S-adenosylmethionine synthetase 2) [Arabidopsis thaliana] (TAIR:AT4G01850.2); similar to S-adenosyl-L-methionine synthetase-like [Solanum tuberosum] (GB:ABB02634.1); similar to S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase 3) (AdoMet synthetase 3) (GB:P43282); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71234.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) 0.06875422843997 0.793190010160589 0.444618990314521 1 -0.301032217921993 20.1041491233884 0.06875422843997 0.0507671698866572
AT4G03400_at 8.93422326496955 9.22700465252658 9.25583637550963 9.34685306791926 9.67707839521497 9.33768179569627 9.47548685161128 9.5485312702007 9.31177042408131 9.46476952330651 10.1891278134468 9.17495573548333 9.63485928935878 9.78793247257735 8.65204370166617 9.3560384428877 9.30030021139736 9.04928002991906 9.277141776095 0.12846073593978 0.124544867589939 0.129000655976463 0.129379170231349 0.129647484914526 0.140866952097746 0.127370091500883 0.126685587184077 0.135954653463806 0.123664051768300 0.128406648834474 0.123664051768300 0.128792049360702 0.128067098299499 0.126924694784516 0.128730403650405 0.135516589774814 0.128458036864278 0.128884320370652 4 4 - 1497677 1498348 1498015 1497535 1499864 - gene protein_coding_gene FALSE TRUE AT4G03400.1 DFL2 (DWARF IN LIGHT 2) Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation. similar to JAR1 (JASMONATE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT2G46370.2); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.0749454348445666 0.793178291589672 0.444625534144981 1 -0.30104108032979 18.7224841858325 0.0749454348445666 0.0801544888137052
AT1G02720_at 2.16968249169158 2.46237919540654 2.05764263042979 2.06497821361581 2.33040207950376 2.23709551550587 2.59239039376876 2.59795834515969 2.67954857727630 2.51109631750011 3.22006667205825 3.18529712852818 2.79659611419507 2.67805650827571 3.27295387205995 2.72798762640338 2.36966057005246 3.03844881952898 2.27856642297358 0.216882593864249 0.208355621147998 0.22804063463884 0.221544634013876 0.222164270980586 0.21698386735199 0.214733153593577 0.210803860481755 0.220180440540190 0.213763174096147 0.211199036480513 0.208355621147998 0.215726113071903 0.222613635247724 0.220050501477907 0.208950916208152 0.223498995187793 0.225208376735565 0.211315111470267 1 1 + 592620 593136 592877.455 591826 594236 + gene protein_coding_gene FALSE TRUE AT1G02720.1|AT1G02720.2 GATL5; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups|GATL5; transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL6/LGT10, transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G02130.3); similar to Glycosyl transferase family 8, putative [Medicago truncatula] (GB:ABE91008.1); similar to Os03g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049861.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.0691616556141233 0.793023435242784 0.444712014210445 1 -0.301158182743623 5.01450136803743 0.0691616556141233 0.053187862643489
AT3G12050_at 8.28540063480139 8.13735975617833 8.06902565358506 8.15255929887074 8.17793233385955 7.98800580666725 8.3929688992663 8.29214384462771 8.0628164683617 8.29340312440464 7.982447915849 8.26939816983468 8.24994862752836 8.28204697186568 8.31344539068914 8.2192490773649 8.201030691687 8.43910968823838 8.24636610104633 0.124802111246969 0.137035350939190 0.133027253437910 0.128536665982711 0.132568990363045 0.143042920379727 0.124525215681975 0.129307985118380 0.141760089203320 0.124525215681975 0.137003716146654 0.128673415366806 0.130810739419440 0.130530528293956 0.135384145572457 0.126261427309915 0.137207398188081 0.127750061993372 0.128509904086503 3 3 + 3839834 3841270 3840212.727 3839108 3841472 + gene protein_coding_gene FALSE TRUE AT3G12050.1|AT3G12050.2 Aha1 domain-containing protein similar to DNA alkylation damage repair protein (ISS) [Ostreococcus tauri] (GB:CAL50217.1); similar to Os08g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061992.1); contains domain FAMILY NOT NAMED (PTHR13009) -0.0681824208891011 -0.792967370860473 0.444743326262827 1 -0.301200573671161 16.4096477607669 -0.0681824208891011 0.0474345797751427
AT1G33830_at 1.08759039148240 0.917619360850953 1.45428863422967 0.860005974914846 1.05033003033264 1.29588426286603 1.22125673572675 0.844266469354997 1.63182509782264 1.37824401376303 1.45457126069926 0.970567529935684 1.42448645893694 1.39248377126305 0.977042839783795 0.807238193272536 1.06334758529614 1.61003546550451 1.61167601597004 0.167770391601173 0.170359622999470 0.167770391601173 0.17306454623807 0.169877053170317 0.167770391601173 0.17108793035198 0.170915405174396 0.172905871737829 0.171651185785720 0.169879329157477 0.173980462742847 0.177749124824593 0.167770391601173 0.175171499505895 0.176783546896787 0.179419589296519 0.172613442202914 0.170954773104239 1 1|0 -|/ 12280500 12280966 12280778.6 12279927 12281386 - gene protein_coding_gene FALSE TRUE AT1G33830.1 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to ATPP2-A3 (Phloem protein 2-A3), GTP binding [Arabidopsis thaliana] (TAIR:AT2G26820.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) -0.0903330424333607 -0.792251450555447 0.445143295289489 1 -0.301741656763485 2.46793190610565 -0.0903330424333607 0.132302590593030
AT1G15590_at 1.26912996960516 1.04442539780345 1.46699293183995 1.55677361170877 1.04387219553656 1.24568263324712 1.31872869115494 0.985900011308176 1.31038311969286 1.75942579572504 0.777029258028267 1.05264488712674 1.25828427485674 1.27964557632994 1.48311180293418 0.899562542224917 1.48734516239816 1.26981392120980 1.46464638602843 0.186433601103023 0.190468583846064 0.190969788979328 0.194385834517018 0.186433601103023 0.194820526566773 0.188834694998404 0.189753912162861 0.193181069871978 0.189355074359746 0.192325651700258 0.190261099811753 0.192951318410954 0.192843291488077 0.192185246499766 0.188860662995073 0.196411805272631 0.191231871221183 0.193377028059870 1 1|0 +|/ 5367369 5368053 5367597.1 5367369 5368418 + gene protein_coding_gene FALSE TRUE AT1G15590.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G80400.1); similar to unknown [Phacelia tanacetifolia] (GB:AAD37364.1); similar to Os01g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042194.1); similar to Os09g0323100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062870.1) -0.0746355483641754 -0.792087310876076 0.445235029554936 1 -0.301865650577286 2.59139556958587 -0.0746355483641754 0.0793140124393362
AT3G42300_at 2.68947575926917 2.50963401654442 2.67366906051094 2.88480651316953 2.06916310185993 2.31056898731767 2.8728365212359 3.00520956036008 2.43065660121894 2.84342840458769 2.557704775326 3.0026048228544 2.51160988060105 2.50124580214759 2.68359960262345 2.50261028201931 3.11828991134304 3.11323708979146 2.54984929237444 0.251304838920403 0.258344452851052 0.264693902586564 0.253334705766979 0.258484303314051 0.256706318512923 0.251304838920403 0.260408199994899 0.272485437828217 0.260669435705654 0.269634699061471 0.254571821540926 0.252053987308776 0.262043725938108 0.257990697868647 0.261150415997679 0.258936186712384 0.251304838920403 0.2555536838404 3 3 + 14465926 14466528 14466217.556 14465318 14466582 + gene protein_coding_gene FALSE TRUE AT3G42300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1) -0.0719261885966383 -0.792004893560076 0.445281095528706 1 -0.301927901421619 5.30534087514945 -0.0719261885966383 0.0676290672425904
AT4G03640_at 1.19664967679914 1.01214686382973 0.977611725638425 1.12132708191074 0.957531797322641 1.11817374719671 0.799514756550738 1.26408424772323 1.01955323802596 1.36418830261511 0.893176506563672 1.11488145805457 1.20630987084682 1.01475431973297 1.30016740374195 0.80355491209295 1.23559548645546 1.32827851189848 1.35017660190063 0.165132377114880 0.164627051433278 0.168305833259375 0.169449458929618 0.164919735143304 0.164113818255522 0.16952204913581 0.171351910068905 0.169308558983766 0.166555763700326 0.163788335272205 0.167500676024877 0.166930500664156 0.170301914791621 0.166049995311986 0.165714933143747 0.168421389296842 0.167120455010424 0.166967042492253 4 4 + 1617014 1618012 1617791.636 1614812 1618126 + gene protein_coding_gene FALSE TRUE AT4G03640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43100.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0784936851912269 -0.79176015478032 0.445417907047244 1 -0.302112722027736 2.23424458188171 -0.0784936851912269 0.0942037554791993
AT1G39430_at 1.95153304550336 1.94924191751834 2.17407381273037 2.24141190131104 1.97833869384149 2.05159134829248 2.19616688698 2.37011437688706 1.95790129210622 2.07872833434071 1.61996501321101 2.07240998370840 2.18181493030324 2.12870432565287 2.29331906552086 2.40230563780262 2.49921375699007 2.03328141565037 2.01118824715803 0.220966298991408 0.217777073950422 0.213565564021577 0.222635820973678 0.212790212947274 0.228832727031045 0.212790212947274 0.223210095437626 0.225566360190274 0.219426684136462 0.212800961720187 0.218325332078378 0.220919197246810 0.217873016653252 0.221700282565061 0.212790212947274 0.212790212947274 0.218392189483967 0.212790212947274 1 0|1 /|- 14659305 14659358 14659331 14659294 14659767 - gene protein_coding_gene FALSE TRUE AT1G39430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43100.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.0662636786124648 0.791535673092068 0.445543418709513 1 -0.302282200649115 4.19896702653631 0.0662636786124648 0.0346815311233718
AT4G01560_at 5.95936802213655 6.25759265824911 5.8542999895423 5.77223755270779 5.72159020568734 5.1628594521635 6.49749647096117 5.80780387992208 3.82338021115414 4.02900153097483 3.89726601766307 4.18903026505214 4.26949183490564 3.58540984890538 5.30727808468617 3.81609065316404 5.1309534999033 4.06510251925402 4.09281533791977 0.277996623265627 0.28408104427866 0.283506747816201 0.2849014085393 0.277202673036171 0.289085769070113 0.276026573211175 0.276631640987333 0.291025898179014 0.290957870448541 0.281313724542964 0.276026573211175 0.282015354676757 0.280029097308254 0.281852953850247 0.281353047934729 0.283086462843625 0.282893757114849 0.289728676168515 4 4|0 -|/ 677471 678438 677973 677054 679237 - gene protein_coding_gene FALSE TRUE AT4G01560.1 MEE49 (maternal effect embryo arrest 49) similar to IMP4 [Arabidopsis thaliana] (TAIR:AT1G63780.1); similar to putative RNA processing factor 1-like [Solanum tuberosum] (GB:ABB86266.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.100986488683262 -0.791157984461203 0.445754643033262 1 -0.302567251320314 10.0113111291502 -0.100986488683262 0.162664765628825
AT3G62940_at 8.46219354304475 8.59424763041135 8.47216784145162 8.47127850703232 8.89622586492946 8.45961361111983 8.65449028453683 8.93326642304734 8.60286749635961 8.45707938202681 8.48752196872005 8.50447292980344 8.56698560703692 8.35053841815022 8.50454640088315 8.38031427791803 8.12297761726954 8.30414941696061 8.3572485140408 0.160196671167550 0.163405943501482 0.165648168144123 0.16825489560241 0.161846781608931 0.165389061509471 0.169122119082511 0.163001862889469 0.165095859570780 0.170199505290563 0.162631589355177 0.155319233398761 0.158699169197885 0.167218332960855 0.162238384592922 0.155762683450911 0.167647679895157 0.169080507881595 0.164222704860099 3 3 - 23274093 23274498 23274298.636 23273925 23275684 - gene protein_coding_gene FALSE TRUE AT3G62940.1|AT3G62940.2 OTU-like cysteine protease family protein similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.1); similar to Fgenesh protein 81 [Beta vulgaris] (GB:ABD83295.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) -0.0779690743382089 -0.791152829537348 0.445757526402021 1 -0.302571141034144 17.0554788600643 -0.0779690743382089 0.0925131309314934
AT4G07460_at 0.711976688978651 0.910959965075199 0.614672662882125 0.548695961493351 0.614384950011215 0.712951950174153 0.78133770505806 1.02148864687347 0.804522639705075 0.760575555165085 0.773730087010893 1.28097846031662 1.43371104682461 1.18507331126042 0.728575263031259 1.35774800259064 0.808637467710681 0.874763363374742 1.31881090085924 0.213825217526384 0.206869187753469 0.205042388542193 0.218706533655915 0.205819723648894 0.202039425558311 0.202155434020282 0.207140847636795 0.220007778045589 0.20818865108341 0.204531180423458 0.215038113200697 0.202039425558311 0.218991296925345 0.209573659269286 0.210541847105139 0.208375876910829 0.215275419370567 0.208503229412684 4 4|0 +|/ 4257831 4259174 4258355 4257794 4259250 + gene protein_coding_gene FALSE TRUE AT4G07460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42430.1) -0.0698326385004766 -0.791114985132131 0.445778694763602 1 -0.302599696329735 1.74791114490567 -0.0698326385004766 0.0577430274737515
AT1G13400_at 1.20706909822999 0.952157260851845 1.16915508771022 1.40247372600126 0.947743601513167 1.49487951595076 0.902214770671361 0.986183989588478 1.55659907637570 1.72030990323414 0.998598837339698 0.950096125148234 1.50092242459270 1.52479303484454 1.15787070442936 1.26910336081531 1.35123489673768 1.35711270563604 1.74266428843457 0.222689662717467 0.226566056663161 0.235811175083699 0.226660814101106 0.224828636452623 0.222638369619549 0.228909994264298 0.232713711862052 0.235302915792995 0.23133366398635 0.222638369619549 0.226450868229759 0.223253522478690 0.227333680648684 0.228104013514192 0.224024016843544 0.228527034190530 0.232807096547673 0.229032011289086 1 1|0 +|/ 4597940 4598883 4598594.9 4597624 4598908 + gene protein_coding_gene FALSE TRUE AT1G13400.1 JGL/NUB (NUBBIN); nucleic acid binding / zinc ion binding Along with JAG, it is involved in stamen and carpel development. Expression is limited to the adaxial side of lateral organs. Activated by AGAMOUS in a cal-1, ap1-1 background. similar to JAG (JAGGED), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G68480.1); similar to C2H2 zinc-finger transcription factor -like [Oryza sativa (japonica cultivar-group)] (GB:BAB03385.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0839089375983786 -0.79095806794377 0.445866473762477 1 -0.302718084495436 2.60118843158518 -0.0839089375983786 0.112927439826200
AT1G23280_at 2.99635278659672 3.28251572425787 2.98923130617614 3.27963374025392 3.18037674323577 3.11219491517662 4.09423578772058 3.12312158065131 2.74749343096855 3.32241374069606 3.03158518052561 3.02436450297692 2.58137287409209 2.82148427264464 3.29452583629679 2.92690789334997 2.99775799570499 3.23697516814828 2.84796975343515 0.212609108284717 0.210822802652260 0.210258232204539 0.213579899152601 0.212291151101883 0.212955204741629 0.216714582901218 0.212976490491874 0.221162077212953 0.21457898508207 0.220946086597814 0.215304255151917 0.213857901074545 0.215056817648574 0.209102601500447 0.210203050005076 0.207762529319966 0.212739914414317 0.210223395261090 1 1|0 -|/ 8260855 8261891 8261412.667 8260854 8262639 - gene protein_coding_gene FALSE TRUE AT1G23280.1 MAK16 protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G07770.1); similar to Os07g0270900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059343.1); similar to Mak16 protein [Medicago truncatula] (GB:ABD28714.1); contains InterPro domain Mak16 protein; (InterPro:IPR006958) -0.108475609914257 -0.790518973106653 0.446112161864513 1 -0.303049254969163 6.23820650159228 -0.108475609914257 0.182647237999608
AT1G16210_at 9.45403233371453 9.56745888283038 9.76147250642446 9.820922536209 9.79994046822325 9.60693067695588 9.85815282219421 9.68653496899143 9.11860658698666 9.42731034037506 9.19006713843287 9.086950595148 9.35652588049334 9.46051643496817 9.20910268348514 9.2835330646269 9.23331665979836 9.29341649126908 9.15381497929014 0.108612310112576 0.118109665762974 0.111671873437348 0.111554747719719 0.106078937121107 0.106083346126677 0.108842856385920 0.113270605654398 0.115736873821373 0.105782866582724 0.109538875249651 0.109997581865703 0.101864616320221 0.112294818777175 0.109298446490107 0.106877193715371 0.108639321762241 0.114872416337092 0.101864616320221 1 1|0 -|/ 5546547 5547309 5547014.111 5546125 5547546 - gene protein_coding_gene FALSE TRUE AT1G16210.1 similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to H0211B05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67164.1); similar to Os04g0561600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053553.1); contains InterPro domain Protein of unknown function DUF1014; (InterPro:IPR010422); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.0683532223321457 0.790276038086705 0.446248129898972 1 -0.303232409629363 18.9431419431487 0.0683532223321457 0.0498881975075036
AT1G71930_at 1.38403215041802 1.31335399479910 1.76418370140982 1.81534739215499 1.62432883917145 1.63342050861760 1.86705027742740 1.73177773723783 1.91662591126505 2.31389360630952 2.10805019452837 2.21134582542566 1.96573991925618 1.73109962153103 2.67460304676682 2.04417416949327 1.92201758032695 2.28141605867302 2.13476947215892 0.189794091900244 0.188995736686134 0.190846282392171 0.189388606033352 0.190716666649084 0.189937054013518 0.199887564014556 0.192028817997811 0.192856812288688 0.190106594880303 0.185788087944588 0.190166993276083 0.188936328129035 0.200618938003183 0.197558829366267 0.19190702026381 0.192569242512767 0.185788087944588 0.185788087944588 1 0|1 /|+ 27081021 27081459 27081240 27079802 27081619 + gene protein_coding_gene FALSE TRUE AT1G71930.1 VND7 (VASCULAR RELATED NAC-DOMAIN PROTEIN 7); transcription factor Encodes a NAC-domain transcription factor involved in xylem formation. Induces transdifferentiation of various cells into protoxylem vessel elements. Located in the nucleus. Expression induced in the presence of auxin, cytokinin and brassinosteroids. similar to VND1 (VASCULAR RELATED NAC-DOMAIN PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G18060.1); similar to ANAC076/VND2 (Arabidopsis NAC domain containing protein 76, VASCULAR-RELATED NAC-DOMAIN 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G36160.1); similar to NAC-domain protein Ze567 [Zinnia elegans] (GB:BAE20090.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0654046878951061 0.79011737122488 0.446336948534173 1 -0.303352005622181 3.76122122444352 0.0654046878951061 0.0279012442049476
AT4G08800_at 0.233988467762338 0.333454370501325 -0.0214482661467057 -0.336132675525125 -0.0459076121927258 0.193778804008616 0.0450711944891713 0.0752731764905151 0.0922281586314534 0.126684448468377 -0.232669432539883 0.0445564355778448 -0.0932187188967281 0.156991007700835 0.156311110472810 -0.00593116325545795 0.46697656303481 0.258029307786037 -0.175827978626965 0.21197242575504 0.214121128934314 0.215684129191261 0.20915629953444 0.211953474374837 0.217163725835046 0.218433287300112 0.210495655463307 0.217907751140443 0.231076128102289 0.212165614990639 0.219669991700401 0.211081474340264 0.212615536433142 0.216949940553451 0.214096823213399 0.220301557606339 0.216420613606151 0.221511684377097 4 4 + 5614834 5615882 5615425.909 5614131 5615916 + gene protein_coding_gene FALSE TRUE AT4G08800.1 protein kinase, putative similar to CKL5 (Casein Kinase I-like 5), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT2G19470.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81302.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0724275719320386 -0.789886828907674 0.446466022149196 1 -0.303525740324555 0.113880773203087 -0.0724275719320386 0.0707794592880629
AT1G69700_at 4.00114799068185 4.75776228851062 2.93127605817574 3.84336667103019 4.55189022601675 3.96286084100774 5.12337215900727 4.89736783396717 4.55233127303925 5.36021023911186 6.97456053070558 7.15775725618204 5.24741100305389 6.2478582902193 6.93142254820006 5.05680688163304 5.04779634008928 6.11609811627192 4.99201280488686 0.271143674729653 0.270443551149321 0.273654658058071 0.276663080801712 0.274050480403869 0.289398455240256 0.272713074145771 0.274978449168866 0.282961280450864 0.270443551149321 0.270443551149321 0.270443551149321 0.270850400357998 0.280235186512795 0.274621597345466 0.270443551149321 0.287213622682104 0.28335983895592 0.273155389724258 1 0|1 /|+ 26224748 26225125 26224974.333 26223901 26225488 + gene protein_coding_gene FALSE TRUE AT1G69700.1 ATHVA22C (Arabidopsis thaliana HVA22 homologue C) Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. Identical to HVA22-like protein c (AtHVA22c) (HVA22C) [Arabidopsis Thaliana] (GB:Q9S784); similar to ATHVA22A (Arabidopsis thaliana HVA22 homologue A) [Arabidopsis thaliana] (TAIR:AT1G74520.1); similar to HVA22-like protein c , putative [Solanum demissum] (GB:AAU93595.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) 0.128357489732137 0.789850714232864 0.446486243853883 1 -0.303552951975128 9.79145483011985 0.128357489732137 0.232332447524836
AT3G22700_at 0.951015115984927 0.832764361677285 1.37255012063598 1.19723531672797 0.555461372106337 0.871543462337581 0.466387723399115 1.52297358253900 0.834417787295062 0.909596623515206 1.20719232962127 0.705478464115556 1.12136285450141 0.92449843808265 1.0513721017293 1.00391482643925 1.19957324825523 1.34469133258556 0.95545942693217 0.199239696635781 0.19174615722719 0.195988379560135 0.196683437924432 0.191137026011881 0.193186238615678 0.192829755091581 0.195637102604504 0.196077677010749 0.197303175329123 0.196565776936724 0.200469537179856 0.199864997378930 0.194776935619673 0.198535768240602 0.195794313194024 0.196274109730492 0.198077238598706 0.204868719824814 3 3 - 8024903 8025370 8025118.818 8024805 8025821 - gene protein_coding_gene FALSE TRUE AT3G22700.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G22720.1); similar to Os09g0479100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063476.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.112924104443675 0.789686774214284 0.446578046345297 1 -0.303676463525832 1.95603391292457 0.112924104443675 0.194330454427584
ATMG00070_at 4.34903273971243 5.30651282570775 4.79381370984148 5.46979218696492 5.24601507043772 4.55252957652538 4.9442384748881 5.91444289004323 3.96723496439998 5.41625253169227 4.30701878528472 4.92088044636608 5.08344067786455 4.6208721919193 4.11046186531031 4.91880067499279 4.95748386318133 4.37796118105074 5.17868131856413 0.261091941891457 0.248458644082237 0.259878554582878 0.252651205298668 0.252978612654816 0.256687464907937 0.263724001975318 0.250474326273841 0.265796431799848 0.253084493882591 0.245568800258395 0.258910604459898 0.250922210871278 0.249915857575066 0.249992966524331 0.251962652906012 0.262394954627231 0.255495023607920 0.252813503900958 M M - 23702 24107 23893 23663 24235 - gene protein_coding_gene FALSE TRUE ATMG00070.1 NADH dehydrogenase subunit 9 similar to NADH dehydrogenase subunit 9 [Brassica oleracea var. botrytis] (GB:ABB54699.1); contains InterPro domain NADH dehydrogenase (ubiquinone), 30 kDa subunit; (InterPro:IPR001268); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) -0.152480203725701 -0.789016958756565 0.446953254508804 1 -0.304180863667948 9.8301328004143 -0.152480203725701 0.28936549737704
AT2G23570_at 1.35689701338511 1.55435471101214 1.34983696220188 1.65730341601989 1.42934578227773 1.38493606603444 1.34865926862660 1.21616103935276 1.42383942395027 1.46645705172536 1.4798122857612 1.44550130082306 1.30982715586003 1.11008387766465 1.78211208512320 1.13859426316533 1.92861658105209 1.76984346084802 1.42540184150045 0.191037514795156 0.195184612875826 0.187400613784583 0.189083622710512 0.205308988365477 0.190021432276219 0.192049588023267 0.189348297256772 0.205059012138008 0.192640566394259 0.198221880845203 0.192049173070874 0.190234447314717 0.189688037249816 0.190388269983713 0.187400613784583 0.198522884897020 0.201792396089098 0.194565226264688 2 2 - 10038822 10039462 10039201.182 10038793 10039680 - gene protein_coding_gene FALSE TRUE AT2G23570.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to protein S [Catharanthus roseus] (GB:AAU95203.1); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.0716601595505844 0.788900938207967 0.447018266146855 1 -0.304268193759721 2.8792442733701 0.0716601595505844 0.0677024627906431
AT1G71970_at 7.85115949805006 8.32368021762932 7.90165063037596 8.23027792459735 8.6817754019629 8.29474271787226 8.02420342252282 8.37316946492736 8.61378305298777 8.19986839948658 8.6299632839477 8.32552180544487 8.68647317193336 8.67756691338847 7.97341081224448 8.86738924421491 8.40199947442706 8.2149902456502 8.46131990229786 0.114903360795209 0.119026134980125 0.12214518565635 0.116691102344864 0.118056546818854 0.117894582450043 0.120771329554463 0.120886290361596 0.125252053045583 0.117626672945349 0.122943685456326 0.120911676373005 0.120366792665001 0.122789146915477 0.120656913156380 0.121852897204218 0.125028533196136 0.118400792963363 0.117411660608186 1 1 + 27096951 27097397 27097188.364 27096690 27097689 + gene protein_coding_gene FALSE TRUE AT1G71970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22680.1); similar to Os12g0174300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066287.1) 0.0906162176176848 0.788627168533884 0.447171696221314 1 -0.304474218577222 16.6586598199908 0.0906162176176848 0.134364808255129
AT1G36920_at 1.37831510370973 1.15207024210206 1.36780078056871 1.54507054170732 1.25545194206528 1.21879851611314 1.19239473709235 1.48083078704987 1.86335902375241 1.35949602254246 1.38435397737276 1.25994936547391 1.53497883867743 1.67771834541647 1.26747745491687 1.53433618665371 1.68059908088029 1.93646067341145 1.95195031584482 0.207961519480026 0.206965311752492 0.205359975886265 0.208327231966627 0.207445562805776 0.205475357671993 0.214891466647590 0.206274174317231 0.212469792870405 0.206325343931170 0.208900327131255 0.207965837033992 0.204822360983305 0.204822360983305 0.221796002180175 0.204822360983305 0.219928999507717 0.211914221502735 0.211829408095066 1 1|0 +|/ 13984893 13986426 13985725.5 13984724 13986502 + gene protein_coding_gene FALSE TRUE AT1G36920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05642.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0722865763688786 -0.788416948899033 0.447289533863003 1 -0.304632376052468 2.95355126183285 -0.0722865763688786 0.0707516663327415
AT1G63540_at 1.07433065949741 1.39286959817809 0.969940729811366 1.55017751584626 0.953368535031983 1.23066245079533 1.26579265421515 0.773918543477241 1.45227439158595 1.12853998340142 0.95863350140441 1.23914289750383 1.39197294971429 1.38010926680049 0.822928108535665 1.15874647791013 1.31890564937773 1.40041665935318 1.77107491680988 0.206391947180200 0.206391947180200 0.212443493790714 0.213885684222647 0.210022662746018 0.210217651660037 0.221474993842050 0.212996520550613 0.209975648414035 0.210080038642103 0.207648476535022 0.206391947180200 0.211624630425452 0.209921795256148 0.208891280420785 0.211639694681884 0.208678463698942 0.206391947180200 0.211204909002263 1 1|0 +|/ 23572485 23573021 23572718.2 23571158 23573158 + gene protein_coding_gene FALSE TRUE AT1G63540.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63530.1); similar to Leishmania major strain Friedlin proteophosphoglycan 5 [Leishmania major strain Friedlin] (GB:XP_843163.1) -0.096231690539095 -0.788368315695818 0.447316797853174 1 -0.304668959642785 2.48112593723530 -0.096231690539095 0.150564901205092
AT1G05910_at 7.05767076996513 6.7115432962534 6.70735201232974 6.73086285883849 6.43013067924219 6.58269049861736 6.66081520869606 6.83277051528296 5.33769825358244 6.03352696723751 5.51843666130738 5.97989654481529 6.0425448947794 5.46383745420741 5.90359284495914 5.99339429766025 6.3327347089827 5.26027176407764 5.89070661853046 0.199774484138221 0.208291105742149 0.199774484138221 0.203718509170618 0.200817634106557 0.203719586365417 0.199774484138221 0.200052266130309 0.225236941620994 0.201731218672788 0.201414332212358 0.202254423800998 0.201369592448532 0.205675226056671 0.209882532139468 0.199774484138221 0.200039490434654 0.200892421142418 0.203938024078111 1 1 + 1795770 1796468 1796111.727 1790223 1796646 + gene protein_coding_gene FALSE TRUE AT1G05910.1 cell division cycle protein 48-related / CDC48-related similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G15120.1); similar to bromodomain protein 103 [Zea mays] (GB:AAN41251.1); similar to Os09g0515100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063664.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0725397843636302 -0.788062795228855 0.447488098683718 1 -0.304898737167674 12.4971374429692 -0.0725397843636302 0.0720207093697204
AT3G07190_at 4.27799079362710 4.63948497981581 4.65725433485497 4.71271161782372 4.63563910752503 4.75281076108186 5.05490215142368 4.84635677797079 4.10398228000093 4.29988816916783 4.28353624457537 4.43446267316789 4.54712416205605 4.38917118104997 4.60540123973213 4.47377100341346 4.54179872363494 4.54302840173007 4.54254186671049 0.23653269066619 0.231981394282218 0.234887639358264 0.238237587063482 0.243732568954934 0.2510016074067 0.237041100565451 0.248215259360663 0.239005002031488 0.237351047456625 0.232269649893741 0.243900065552242 0.251286657031851 0.231981394282218 0.237134822272383 0.235257954102629 0.254006597479011 0.239676799888019 0.235563711193666 3 3|0 -|/ 2286054 2287025 2286576.5 2285783 2287453 - gene protein_coding_gene FALSE TRUE AT3G07190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48660.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69146.1); similar to Os03g0848400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051893.1); similar to Os02g0321800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046689.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.0733681056611418 0.78801423817647 0.447515327832684 1 -0.304935248975545 9.09352255333024 0.0733681056611418 0.0756258634555762
AT1G28420_at 6.5735786482473 6.58914188182325 6.75300293595298 6.61013128178827 6.98037643508697 6.58021424851932 6.78536084014158 6.66516467716047 6.91632206385591 6.72041999446147 6.81760035281456 6.77785324661222 6.6161984126855 6.49658785018017 6.60100555361439 6.81863794780444 6.63801580876551 6.36069534308509 6.95964110092207 0.183284455238460 0.178810299574907 0.173001342491766 0.177040576623625 0.179778729516489 0.188908237351706 0.181581381167653 0.175129434818357 0.185590166548307 0.18923895645206 0.177579977433635 0.174196930775048 0.179864654265494 0.177501941793713 0.180587201342424 0.182976207388052 0.184915141412840 0.178678730851332 0.180075308020213 1 1 + 9986892 9987420 9987101.455 9979928 9987624 + gene protein_coding_gene FALSE TRUE AT1G28420.1 HB-1 (homeobox-1); transcription factor similar to homeobox transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G44180.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10652.1); similar to Os05g0562400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056321.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain DDT; (InterPro:IPR004022) -0.0735085125704236 -0.787396412394176 0.447861877547097 1 -0.305399640963804 13.4452640523525 -0.0735085125704236 0.0764642021193319
AT3G52500_at 8.80271568893428 9.03713402208607 8.09270475307513 8.33239745617571 8.53207960504247 8.57131166752706 9.0410575775832 9.23293771029333 8.75823346316716 8.42862963999268 9.54157292955883 9.6598124929821 9.4878176925751 9.67246190008332 9.71687133667742 9.38595101690215 8.659296010172 9.47434329750172 8.79497197062177 0.141226520464434 0.135329431837755 0.138313940463986 0.135429912711499 0.137860735471808 0.138816616334782 0.141326223351258 0.139863870089233 0.155773833927351 0.144445136210069 0.131031193617888 0.136519148396562 0.138133906473502 0.135948922815233 0.141166358445771 0.133818038243872 0.139784162070490 0.140341227629905 0.141096979778638 3 3 - 19476706 19477180 19476966.455 19476477 19478364 - gene protein_coding_gene FALSE TRUE AT3G52500.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G16563.1); similar to aspartic protease [Fagopyrum esculentum] (GB:AAS48510.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.071408132013459 0.787330917582221 0.44789862499077 1 -0.305448851608122 17.7604810729982 0.071408132013459 0.0671937380683441
AT4G29580_at 1.06007682209227 0.824317795724596 1.19817382653901 1.11889872643822 0.931795768659685 0.70314578306452 1.36191607184652 0.61448871533771 1.38302565472437 1.36400401546043 1.48036963194833 0.88344860288797 1.05600944604368 1.23690242993109 1.47886873185798 1.05204728263408 1.72129875510973 0.476983600908709 1.39900197020894 0.210628344186807 0.211906246985724 0.213637113217383 0.217316890772991 0.212374778296657 0.213728651212320 0.219674946724957 0.213806797684275 0.216727589990206 0.216617469531237 0.222304939535501 0.210628344186807 0.210628344186807 0.210628344186807 0.213671152896891 0.212323455273717 0.210628344186807 0.220005865540473 0.210628344186807 4 4 + 14510523 14511014 14510785.727 14510153 14511049 + gene protein_coding_gene FALSE TRUE AT4G29580.1 cytidine deaminase, putative / cytidine aminohydrolase, putative similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29570.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) -0.0929829058538157 -0.786608384853082 0.448304149314436 1 -0.305991498721098 2.25422749219437 -0.0929829058538157 0.141946533779492
AT1G04560_at 1.86224330649139 1.42974111760273 1.75853143200189 2.05108894745124 1.50225908821754 1.65870397730201 1.76904951876869 1.65825398595052 2.02660312512949 1.66860287008461 1.89996589450173 1.41304634359748 1.27763139372344 1.89705133315721 1.8226477700257 1.48196604352242 1.94141693518068 1.44197588786131 1.90514761779700 0.17469040143919 0.176504908063387 0.173755261258084 0.172965303952257 0.176617096467809 0.175162407957881 0.177347228933387 0.175980830560011 0.177168834748380 0.180891051169097 0.173207675012126 0.172740054866972 0.180521989272925 0.180750311593658 0.181363539693571 0.176879548956029 0.185465444945568 0.186676713245507 0.184535385075339 1 1 + 1245099 1245861 1245566.636 1244946 1246058 + gene protein_coding_gene FALSE TRUE AT1G04560.1 AWPM-19-like membrane family protein similar to AWPM-19-like membrane family protein [Arabidopsis thaliana] (TAIR:AT1G29520.1); similar to a Lea protein with hydrophobic domain, high pI value (11.6); 15kD protein; putative (GB:AAC37469.1); contains InterPro domain AWPM-19-like; (InterPro:IPR008390) -0.0784989792171419 -0.786079135169874 0.448601343911272 1 -0.306388704048504 3.46810754065656 -0.0784989792171419 0.0962592664844484
AT1G09610_at 1.02075192548473 0.895383665276053 1.65788234353802 1.22132005839551 1.12979777358583 1.47066143200316 1.43722689692098 0.988061303761337 1.68779559234251 1.22761722957728 1.48599308513489 0.946667822970739 1.13474320419395 1.20859697468501 1.52574868650306 1.30368825024599 1.91884068801220 1.34347527975366 1.48991451801714 0.197177973210028 0.198475483183634 0.197579119018442 0.208619527460994 0.19758201488674 0.198573742074275 0.197177973210028 0.198530704029565 0.208368067672043 0.206524803398317 0.216814310356404 0.205597306199894 0.197177973210028 0.199128237173753 0.205612724808761 0.202837923480837 0.210664623285036 0.201756500417302 0.203236673972737 1 1 + 3112047 3112572 3112219.182 3111696 3112875 + gene protein_coding_gene FALSE TRUE AT1G09610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33800.1); similar to Os12g0204500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066378.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) 0.0872931281558253 0.785897403944207 0.448703422642917 1 -0.306525039987914 2.64109152266224 0.0872931281558253 0.125299415584815
AT3G47400_at 1.46651146107908 1.17306175122424 1.02392109989088 0.872833765892196 1.11712499184999 0.948001548617977 1.24379062265733 1.26264804657326 1.38506141273776 1.00515072129897 1.34265874128292 1.41755368907003 1.17512543225488 1.36476125974028 1.18072423741075 1.09073811762826 1.19328230900123 1.62204083539009 1.04046360032221 0.222416419101102 0.213749915458557 0.211844723981322 0.220444498042920 0.21806644882548 0.217020645932101 0.217960972514955 0.212169021321428 0.216726213051446 0.227017821941613 0.215997241469576 0.220721386159643 0.216706656188853 0.215445992050968 0.217261766421979 0.216926271809345 0.215936732691403 0.218823097321351 0.217969832955518 3 3 + 17478358 17478842 17478587.545 17476575 17479103 + gene protein_coding_gene FALSE TRUE AT3G47400.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G51490.1); similar to Pectinesterase-2 precursor (Pectin methylesterase) (PE) (GB:O04887); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.0706153096090286 -0.785379160055523 0.448994603830398 1 -0.306913676784685 2.35944623889410 -0.0706153096090286 0.0642632980372423
AT3G09710_at 1.84414090992090 1.82904218200071 1.39861049454319 1.63221091809594 1.30052205195001 1.63058545597479 1.75767198460145 1.94916304819931 1.80057342783615 2.18730752814723 2.5600550436475 2.30373914932634 2.12827343102453 2.15143854744929 2.55320619280694 1.95751384677319 1.91282131589444 2.46781582134879 2.15285648377861 0.187827632686202 0.181004200459353 0.19532429448166 0.188566987012913 0.180806658899962 0.185055679986670 0.182188908394133 0.183824087595000 0.189447847058233 0.181741126809624 0.180310036086091 0.182220428568760 0.18232841720622 0.183999729644493 0.182961085925399 0.183520048559298 0.181541827102805 0.189340929253340 0.184789077658537 3 3 - 2976975 2977376 2977160.455 2976669 2979274 - gene protein_coding_gene FALSE TRUE AT3G09710.1 IQD1 (IQ-DOMAIN 1); calmodulin binding Ca(2+)-dependent calmodulin-binding protein. Targeted to the nucleus. Involved in glucosinolate metabolism in response to biotic challenge. Expressed in vascular tissue. similar to IQD2 (IQ-domain 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G03040.1); similar to IQ calmodulin-binding re (GB:ABE78306.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.073538431213196 -0.785154129118492 0.449121078149093 1 -0.307082359352774 3.81837857988806 -0.073538431213196 0.07747126125763
AT4G21990_at 9.13807955770442 9.52515898654566 9.61297171480828 9.64967886993125 9.95627641423845 9.2596559051625 10.4659247862457 10.2367617511449 8.6356643606401 9.47748382696227 9.22897246503232 8.80578339103847 9.00011536156025 8.82899739000151 7.6106724319737 8.86235082997421 8.876986876193 8.91708456009065 8.08069540190852 0.149186793080478 0.145837577988835 0.153575577662253 0.145280649420179 0.148486236266660 0.153491975064581 0.148593421091218 0.147050946376282 0.160043185108977 0.147549673060191 0.145280649420179 0.146523611835162 0.145280649420179 0.159473159405300 0.167333416900977 0.148018737833112 0.154949231450402 0.152077289253210 0.154880327818372 4 4 - 11657299 11657846 11657633.909 11657020 11659117 - gene protein_coding_gene FALSE TRUE AT4G21990.1 APR3 (APS REDUCTASE 3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. Identical to 5'-adenylylsulfate reductase 3, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 3) (APS sulfotransferase 3) (Thioredoxin-independent APS reductase 3) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 26) (PAPS reductase homolog 26) (Prh-26) (APR3) [Arabidopsis Thaliana] (GB:P92980;GB:O48887;GB:Q38948); similar to APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT1G62180.1); similar to APR1 (PAPS REDUCTASE HOMOLOG 19) [Arabidopsis thaliana] (TAIR:AT4G04610.1); similar to APS reductase [Brassica juncea] (GB:CAA04611.1); similar to adenosine 5'-phosphosulfate reductase [Glycine max] (GB:AAL66290.1); similar to 3'-phosphoadenosine 5'-phosphosulfate reductase (GB:AAC49573.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-independent 5' (InterPro:IPR004508) -0.0933731638228286 -0.784923088531876 0.449250954102803 1 -0.307255502248558 18.4793893030910 -0.0933731638228286 0.143643057073105
AT1G17145_at 7.815948073254 7.5796012474293 7.90088079197462 7.4347900125312 8.64191558006263 8.10392518316152 7.84029219667938 7.14720720176428 7.03430000212302 7.42054512630196 7.01309953246958 6.8787802889456 7.07001574409599 7.24742598674843 6.84443403232002 7.47271128672184 7.48280089507505 7.34016696197185 7.69256744383847 0.187715314272402 0.187211304615562 0.200645295008452 0.190998789816160 0.186891816291194 0.211304727248256 0.18999139898863 0.188115185001298 0.210561599147646 0.188850230107347 0.193307476565610 0.185707159987474 0.183569581087086 0.192286274340461 0.199384528526112 0.189418762902859 0.195462784835737 0.182445962763039 0.183349525667335 1 1|0 -|/ 5860362 5861372 5860692.1 5860112 5862675 - gene protein_coding_gene FALSE TRUE AT1G17145.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78420.1); similar to hypothetical protein DDBDRAFT_0205514 [Dictyostelium discoideum AX4] (GB:XP_642422.1); similar to Os02g0244100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046414.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.105412097886575 0.784660331303928 0.4493986886675 1 -0.307452358955886 15.0836451350895 0.105412097886575 0.176727784082959
AT4G22440_at 0.877296996143764 0.727371504922718 1.21702008956676 1.24442519006827 1.03356602149382 0.962340414072156 1.21285700735412 1.07115969535650 1.02718474632919 1.18953937317494 1.10077449427201 1.12031163382403 1.46272871541993 0.9602246396173 0.617789179276065 1.15235488031374 1.37082256563482 1.17105727703238 1.17181177916112 0.192833761966058 0.188269088502079 0.192266973395769 0.198446995625355 0.185396831008797 0.190576276158705 0.188347479271066 0.195845630238962 0.194892106673676 0.198234599210023 0.185676741415765 0.192160534087123 0.195514608495163 0.193207368970495 0.194650292333111 0.188450560255134 0.194526142024805 0.196197921008899 0.193580998567795 4 4|0 +|/ 11831047 11832254 11831809.333 11831036 11832280 + gene protein_coding_gene FALSE TRUE AT4G22440.1 contains InterPro domain Protein of unknown function DUF850, transmembrane eukaryotic; (InterPro:IPR008568) 0.0660812924040042 0.784311613611326 0.449594802891958 1 -0.307713526862574 2.16776455957003 0.0660812924040042 0.0380641228464930
AT3G50130_at 0.281237213716761 0.320774787480310 0.352485662006109 0.313305918868987 0.189956695532660 0.665221307107285 0.46531595613443 0.554998850767664 -0.286035625088055 -0.0403791165001095 0.11123286604047 0.856310399407248 0.00129052412992792 0.0751789350719696 0.0876053654573288 0.138989696176241 0.146625223788228 0.357542283920029 0.465273551515494 0.176241297435162 0.172804856823102 0.177399373232891 0.178735651449345 0.171380793034404 0.174468070967099 0.171380793034404 0.171380793034404 0.179588827163822 0.179881804260955 0.176178859231432 0.178169606559110 0.176225389976404 0.178173643514502 0.185492586818829 0.174839248199818 0.176870290127221 0.184078462830716 0.185663149230758 3 3 - 18600103 18600971 18600473 18600094 18602205 - gene protein_coding_gene FALSE TRUE AT3G50130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50140.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50120.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50170.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Atrophin; (InterPro:IPR002951); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) 0.0751106678135612 0.78412965132883 0.449697158089203 1 -0.307849764532418 0.526978639814129 0.0751106678135612 0.0842507428115174
AT4G14050_at 0.93429734722065 1.19965923723060 1.20461153892069 0.962587617999708 1.09618702610621 1.38252723377310 1.41305328007782 0.906428244620767 1.44400692853731 1.17503985131782 1.23425188023188 0.880596457430085 0.839426470124986 1.06625923276401 1.14210261442987 1.36913684193034 0.845262305777333 1.55580519108826 1.3843127662069 0.219514035293151 0.20647302667069 0.216724038259063 0.210959859876059 0.206032268774298 0.216366724216129 0.206426522904553 0.206032268774298 0.212395827370697 0.213802177437950 0.217605848959239 0.211537117262046 0.209399472552092 0.219474883658815 0.206032268774298 0.212446438264594 0.227374082381358 0.210381067683345 0.209685470881197 4 4 - 8103786 8104135 8103927.333 8103640 8105516 - gene protein_coding_gene FALSE TRUE AT4G14050.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G68930.1); similar to Os11g0661000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068407.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22571.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0848646154430571 -0.784086756805174 0.44972128879052 1 -0.307881876179585 2.36294809386508 -0.0848646154430571 0.118343600073966
AT4G13130_at 1.62965210278841 1.95681197758747 1.91367891416935 2.38238793305917 1.77037288214068 2.03649678673328 1.67561425538727 2.06879376807464 2.21005857870799 2.15713656673723 1.52272844652411 1.67105181337836 1.89406535425006 1.85367405461590 1.37088629396720 1.71198016198949 2.0541713691736 2.23862328913103 2.10971467057741 0.179788146497976 0.178938065217667 0.181030738370378 0.181564622642173 0.178725226639296 0.181321203636724 0.182599391895895 0.179483561620281 0.190491512973012 0.189204383788307 0.188284216256818 0.18560667003017 0.184233121308174 0.178725226639296 0.193599575096734 0.181114234737357 0.191330362187203 0.179636047217436 0.181715889067697 4 4 + 7649181 7649594 7649436.364 7647385 7649827 + gene protein_coding_gene FALSE TRUE AT4G13130.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62030.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02540.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.088153118864659 -0.783944050884858 0.449801575330884 1 -0.307988697327003 3.90353484576900 -0.088153118864659 0.128589489180007
AT1G53350_at 4.22756180734901 4.91250367689045 3.82233420618766 4.38398610085341 3.82742658061518 3.78535456525984 3.95112451256223 3.47479030634843 3.73961288202024 3.68377833039566 3.76979009167945 4.26611293781457 3.38341431603865 3.9497372330944 3.68228611580341 4.01383395180219 3.63003058859687 3.25466247771447 3.87252930715308 0.256623804421778 0.257568939469835 0.267992815668275 0.270201685211502 0.257921034012725 0.263308177111947 0.266494350982632 0.257713015468636 0.263901689912919 0.256993519216173 0.258818461045244 0.252846755720834 0.262859459526835 0.260799159912883 0.253408573629694 0.254504371628829 0.263934345262902 0.26462751880725 0.272138844504649 1 1 + 19909981 19910421 19910154.364 19907567 19910580 + gene protein_coding_gene FALSE TRUE AT1G53350.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance RPP8-like protein 2 (RPP8L2) [Arabidopsis Thaliana] (GB:Q9MAG6;GB:O64976); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G35450.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G48620.1); similar to Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.104146544173416 -0.782344383451842 0.450702185545396 1 -0.309184935314511 7.80265537147044 -0.104146544173416 0.174198456613729
AT1G76170_at 4.90081026578063 4.8051041917932 4.63704256831633 3.9745304037993 5.12039980707315 4.83166037701235 4.47963943397085 3.91972040008071 4.76245975044651 4.49268424373818 4.0307828323621 4.29126056765752 4.0066576185971 4.50561705654653 4.03438286536444 4.42053507644345 4.44642665393915 4.33908387909766 4.45780619390283 0.210451819460897 0.213070471671387 0.194316737159105 0.202474802049102 0.202232900287647 0.215147829295817 0.208420376844384 0.195114325961141 0.194316737159105 0.198291976647593 0.203179066375767 0.199860493944935 0.208675670491507 0.19839194200319 0.208541616530323 0.197874774083789 0.198279202125380 0.198865774401159 0.194328240982671 1 1 - 28589183 28590087 28589551.6 28588933 28591119 - gene protein_coding_gene FALSE TRUE AT1G76170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44270.1); similar to MGC107918 protein [Xenopus tropicalis] (GB:NP_001015743.1); similar to Os02g0762300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048203.1); contains InterPro domain Protein of unknown function UPF0021; (InterPro:IPR000541); contains InterPro domain PP-loop; (InterPro:IPR011063) -0.0985251805671221 -0.782133515283339 0.450820990975849 1 -0.309342462042635 8.9987767883684 -0.0985251805671221 0.159074968754314
AT4G28820_at 2.60666422219393 2.30076561253007 3.29537815270742 2.7769253503206 3.45076781724509 3.12341450976911 2.89599666688075 2.59797715941663 2.45205260938898 3.20443704098325 2.34975563171578 2.29904129725423 2.94379178843789 2.42163213546607 2.46087420955223 2.10103567322384 3.01116931121929 2.26763610082435 2.94391407658801 0.288103203257558 0.26663236800373 0.275470831147561 0.266769421938539 0.267521554298394 0.269631913728527 0.284673173068162 0.272872754116982 0.280933201077403 0.26663236800373 0.26663236800373 0.274022246366276 0.271537651821120 0.279003399595915 0.267926567331025 0.274514756397117 0.271065469284222 0.27291679971769 0.26663236800373 4 4|0 -|/ 14231101 14232214 14231545 14230701 14232348 - gene protein_coding_gene FALSE TRUE AT4G28820.1|AT4G28820.2 zinc finger (HIT type) family protein similar to hypothetical protein LOC393243 [Danio rerio] (GB:NP_956567.1); contains InterPro domain Zinc finger, HIT-type; (InterPro:IPR007529) 0.0881681591984206 0.781966930682918 0.450914860883399 1 -0.309466880637358 5.55532031677384 0.0881681591984206 0.129310525883906
AT1G04910_at 7.23457110961297 7.43944205421929 7.17954529698183 7.30549280800602 7.43413557105641 6.96192769319588 7.34155191182454 7.36102675884995 7.091548120422 7.1108188258865 7.48832520377788 7.05183318277875 6.88389433778542 7.04709042798723 6.88074504446522 7.0008136093491 6.62301403469537 7.18008840660777 6.94551305022819 0.203984364781003 0.188393252128480 0.194896698239619 0.194643134610039 0.185129825952146 0.186022907108647 0.190001696172366 0.195827744378208 0.200866245509219 0.187147530131024 0.184653197778827 0.187822784610480 0.195373513809081 0.182038190357216 0.193580683637925 0.182858245649201 0.216669122466499 0.186349099599537 0.183246494811149 1 1 - 1388113 1388636 1388396.636 1387870 1391186 - gene protein_coding_gene FALSE TRUE AT1G04910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22460.1); similar to Plant protein family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97941.2); similar to Os11g0481200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067896.1); similar to Plant protein family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93715.2); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.0768452087823519 -0.781785828376866 0.451016925815884 1 -0.309602115581709 14.3165960820232 -0.0768452087823519 0.0917670274583333
AT1G27950_at 9.64813297612787 9.90947588113356 9.25520216781502 9.38356611704414 10.2834184618777 10.0789085301971 10.7404830314987 11.0285509521539 11.4147240786094 10.9174151858007 12.0462874763230 12.1109566632186 11.3657742516118 11.5980656678631 11.8779921952254 10.8185561590381 10.5933079362982 11.4096664658319 10.7980703263655 0.0809437773157485 0.0829920162223476 0.0871949795638417 0.0801332341140155 0.0799951420236588 0.0800176641807206 0.0793556783391112 0.0785640507176006 0.0790367788827943 0.0774043935933379 0.077579205631339 0.0777204767964226 0.0769785976410015 0.0828624359633965 0.0798059509733175 0.0769785976410015 0.0813661719079912 0.0769785976410015 0.0801439162502613 1 1 + 9740755 9741945 9741421.091 9740691 9742146 + gene protein_coding_gene FALSE TRUE AT1G27950.1 lipid transfer protein-related Identical to Uncharacterized GPI-anchored protein At1g27950 precursor [Arabidopsis Thaliana] (GB:Q9C7F7;GB:Q570M7;GB:Q8LEI0); similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) [Arabidopsis thaliana] (TAIR:AT2G44290.1); similar to lipid transfer protein-like protein [Thlaspi caerulescens] (GB:ABI81469.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.0736071179969735 -0.781400694567898 0.451234027698042 1 -0.309889615221788 21.3014567891567 -0.0736071179969735 0.0792251842396698
AT2G05090_at 1.35939284470858 1.42826789447822 1.73283593658178 1.64941511532475 1.12366527769008 1.55234243173624 1.25834409236601 1.27504222888463 1.43920028800207 1.62130822773366 1.85386719340024 1.51364400824004 1.62530416577579 1.83280455182538 1.17363032298012 1.25593961704677 1.08104053764326 1.49882890122491 1.49294841843984 0.180114358477356 0.170418200371946 0.180892875964916 0.172690526875765 0.170956931957111 0.176544428150828 0.172959295594192 0.17198552262968 0.172837857487307 0.170422982709149 0.173823253949357 0.174058664589495 0.177093470131009 0.170373401509664 0.183674132788606 0.177102659313359 0.170262837010665 0.176409899657987 0.171090131548866 2 2|0 -|/ 1818180 1818895 1818439.2 1818139 1820698 - gene protein_coding_gene FALSE TRUE AT2G05090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37080.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.0729331797161971 0.780980005534642 0.451471249443702 1 -0.310203513203710 2.92101392288408 0.0729331797161971 0.0765648548062893
AT1G30515_at 0.813455610685629 0.608311702102615 0.818290786877464 0.99730644493213 0.592324436390185 0.90383454401187 0.882001464871774 1.23118411522276 0.483086690223174 0.81051863832036 0.792748624945908 1.42353497897266 1.08716821793266 1.07354419451623 0.896265292333103 0.715430522440664 0.868818400843297 1.0649591719553 1.04639038422828 0.196257031838723 0.194037115781154 0.19623112632862 0.193943288472017 0.194906470927530 0.195796900847597 0.196196592759647 0.200566197877447 0.212537592382796 0.194339335601895 0.193943288472017 0.19762607801788 0.206605223515757 0.195369052311902 0.193943288472017 0.195101487571297 0.207729145060137 0.199773484388162 0.193943288472017 1 1 - 10809471 10809803 10809653.727 10809271 10809897 - gene protein_coding_gene FALSE TRUE AT1G30515.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21740.1); similar to hypothetical protein MtrDRAFT_AC152752g8v1 [Medicago truncatula] (GB:ABE87455.1) 0.0772554672003782 0.780683162295835 0.451638684459836 1 -0.310424913292340 1.74099226134501 0.0772554672003782 0.0936891961767157
AT1G07690_at 1.54999381787134 1.83056517367874 1.79037426541364 1.62384134952214 1.70534247681393 1.19162211432523 1.57898710875060 1.29360801916591 1.54498404537846 1.89953941738830 1.57970648627008 1.88210952056655 1.74593749960179 1.76627931370181 1.48801391560369 1.30910772717584 1.08155906012312 1.85133822327435 1.86611107665939 0.190286280931905 0.184658621729928 0.18058593935002 0.184299621531924 0.182187752578539 0.191436039711912 0.18058593935002 0.186294450635723 0.184575258977529 0.197118696667601 0.187405880379251 0.183228731519933 0.18482722879489 0.185483086006856 0.18058593935002 0.187355277893882 0.183389035434355 0.183693702233795 0.18058593935002 1 1 + 2378115 2378953 2378582.364 2378073 2378997 + gene protein_coding_gene FALSE TRUE AT1G07690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54950.1) -0.0838492616001562 -0.78054030056541 0.451719280204157 1 -0.310531439925454 3.24965078140854 -0.0838492616001562 0.116320972218536
AT1G03160_at 7.39761019629499 7.3237252109166 6.95409956083747 7.09841824417137 7.46820741969773 7.17735951904469 7.5498511474015 7.78394371657085 6.76585348727831 6.50567004154649 6.77682122959399 6.9640782584102 7.02386470652257 7.28695794956518 7.46666193789872 7.3870387566153 6.78647432282345 6.84357945211815 6.48260109842027 0.153998615325626 0.156595383047473 0.159688763128142 0.158879527444595 0.157558433544192 0.159970362471389 0.158654904431951 0.160302100990488 0.162678020789233 0.16724104264751 0.159560449226677 0.153253941293686 0.155982851565704 0.157119070507853 0.157260000859893 0.156561710270617 0.164151707551421 0.161446260637357 0.165325237589013 1 1|0 +|/ 763368 764469 763975.778 761282 766158 + gene protein_coding_gene FALSE TRUE AT1G03160.1|AT1G03160.2 FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. similar to Os05g0390100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055439.1); similar to Mitofusin 1 GTPase, involved in mitochondrila biogenesis (ISS) [Ostreococcus tauri] (GB:CAL55609.1); contains InterPro domain Thiamine monophosphate synthase; (InterPro:IPR003733); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.0714824928767932 0.780399240928155 0.451798868412085 1 -0.310636605859723 14.1699732697545 0.0714824928767932 0.0704395632517096
AT3G46710_at 1.07966532791997 1.15385989220807 1.31100835504219 1.10289022766503 0.806898775491095 1.35861695176028 1.18455171207242 1.24474168068528 1.11727793343027 1.31673213117341 0.9849997808287 1.12835765015110 0.68389388683665 0.430963475591317 1.18236248134283 0.854566177534915 1.55113418288164 1.17260981745604 0.978865954111164 0.209136663214398 0.209416006128622 0.205810501312469 0.211140569382753 0.210585801898066 0.205810501312469 0.207082670120875 0.211133148297582 0.209281193047063 0.206763585691197 0.207467687461660 0.216592724458539 0.210730603151785 0.208705636386448 0.218689969284282 0.209477689228623 0.211609337649107 0.218755784612430 0.21539118301031 3 3 - 17217480 17218049 17217790.636 17217474 17220017 - gene protein_coding_gene FALSE TRUE AT3G46710.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Putative disease resistance RPP13-like protein 2 (RPP13L2) [Arabidopsis Thaliana] (GB:Q9STE5); similar to disease resistance protein (CC-NBS class), putative [Arabidopsis thaliana] (TAIR:AT3G46730.1); similar to RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13), ATP binding [Arabidopsis thaliana] (TAIR:AT3G46530.1); similar to NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81444.1); similar to NBS-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81446.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767) -0.0799327418627516 -0.780267256107197 0.451873344661203 1 -0.310734990885108 2.2233972509303 -0.0799327418627516 0.103375180327751
AT1G52050_at 1.96727334876235 1.93315220777178 2.13420623317557 2.29157324505838 1.56458534595645 2.14527404882313 1.48843797959023 2.23215353462014 1.77784523593623 2.06459757479660 1.58189428326580 1.47501331901084 2.03206458188282 1.6502885212482 1.63389280248586 1.72994562352931 2.29628513648691 2.05365518269141 1.35977333054707 0.19600121921397 0.190412471280731 0.195420205839950 0.190242351941473 0.200038728388959 0.199644554828466 0.196091887901471 0.202473924214495 0.196503023159697 0.192069720421397 0.193800656473273 0.199683943514288 0.195788327818948 0.198885707040750 0.198728274280624 0.192350971026461 0.196805008642394 0.199359784696842 0.203876284592813 1 1|0 -|/ 19358776 19359419 19359165.5 19358588 19360433 - gene protein_coding_gene FALSE TRUE AT1G52050.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G52070.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 0.100606667399554 0.779613192591589 0.452242535934406 1 -0.311222329794189 3.73993298217897 0.100606667399554 0.165648736419410
AT1G66210_at 1.56428146179584 1.02825292020207 1.58820026698388 1.37308055098613 0.845145083546089 2.02862171284958 0.960536779331504 1.22305570269784 1.5226515317232 1.17439283111813 1.22430315839438 1.11373875490759 1.80372972966953 1.50163200105548 1.47600315578854 0.656575511599542 1.41342827747267 1.28516912339474 1.26497850447905 0.201185238248242 0.201516748148549 0.200987652378936 0.203423797200758 0.20449836267381 0.212761920763577 0.202818294049682 0.205707764608291 0.208448330343362 0.202187177579529 0.202371027232527 0.205448849464653 0.206400392739427 0.205473116778793 0.201795291936515 0.203411708949083 0.202312913982372 0.202713301801307 0.199937803977654 1 0|1 /|- 24669550 24669924 24669767.9 24669292 24672446 - gene protein_coding_gene FALSE TRUE AT1G66210.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G66220.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.126689181256560 0.779466447632434 0.452325394023666 1 -0.311331618867826 2.64139518637017 0.126689181256560 0.232379372710456
AT2G34400_at 2.45419694720636 2.47869766457657 2.71605507021814 2.57164868797734 2.29415176859099 2.48595764849709 2.26497876726280 2.38976891203157 2.36990881775628 1.98045641713719 2.05241472655485 2.06483036636800 2.19820081764666 2.25977866059862 2.21275273303835 1.97576443327255 2.68170334965509 2.22679897948453 2.23523073439669 0.189653964223911 0.189653964223911 0.191895086813296 0.194426843439368 0.19202937999463 0.197416011161834 0.194993309870346 0.200963008574462 0.204678055277377 0.189653964223911 0.189653964223911 0.190671265673505 0.195059803793902 0.204303718602288 0.204881746791186 0.190655409054155 0.199344921549609 0.195614855148819 0.202285895937227 2 2 + 14524668 14525184 14524886.091 14523317 14525265 + gene protein_coding_gene FALSE TRUE AT2G34400.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G08820.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22410.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD33369.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0669372864744214 0.779250354943448 0.452447426466786 1 -0.31149252183342 4.6590465156738 0.0669372864744214 0.0470172560323371
AT4G08530_at 0.554330775105607 0.602143585848051 0.748755393489045 0.916876879418045 0.362079273772494 0.483725893602835 0.623196867612624 0.84043144876917 0.546100853006395 0.70724217411004 0.60376695293681 0.622113655605356 0.299421339397478 0.524149047056123 0.412360466669847 0.538351324616956 0.69345253137548 0.949937838571556 0.813643021482929 0.188269237516576 0.186175221689678 0.191104400422873 0.186118204198749 0.188101800091140 0.186686070353877 0.190859973479627 0.190952901302668 0.190487414775136 0.194805433352721 0.187848728287801 0.189429169744348 0.203009203192925 0.186987511274381 0.193323067762011 0.187980763433926 0.186118204198749 0.188991121208973 0.189627014598479 4 4 + 5421882 5422168 5422010.364 5421859 5422353 + gene protein_coding_gene FALSE TRUE AT4G08530.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.0678587571338391 -0.779169009895635 0.452493369366663 1 -0.311553081244444 1.27616226173314 -0.0678587571338391 0.0526438039466923
AT1G03130_at 13.3603403823418 13.4504251612810 13.2788224828279 13.2827402694398 13.3181376219982 13.3174160392530 13.7156726175927 13.7447143706216 14.0260958500074 13.9882174216615 14.2141431220287 14.1721348973642 14.025916686489 14.1003752826598 14.1743772967282 14.0878990216905 13.9484229394142 14.2683120100567 13.9335623904058 0.0571524500810602 0.057646344436085 0.0570544385231927 0.0577971605555393 0.0563922073346206 0.0603936638984788 0.0597355296604818 0.058487271173916 0.0604496285371477 0.0560013619556601 0.0556206440355345 0.056265693757586 0.0568926978711459 0.0589097968975037 0.0583829586827021 0.0554801491318883 0.0576260165147879 0.0578034841082037 0.0559315898061891 1 1 - 753670 753985 753850.545 753307 754198 - gene protein_coding_gene FALSE TRUE AT1G03130.1 PSAD-2 (photosystem I subunit D-2) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2) Identical to Photosystem I reaction center subunit II-2, chloroplast precursor (Photosystem I 20 kDa subunit 2) (PSI-D2) (psaD2) [Arabidopsis Thaliana] (GB:Q9SA56;GB:Q9SUI3); similar to PSAD-1 (photosystem I subunit D-1) [Arabidopsis thaliana] (TAIR:AT4G02770.1); similar to unnamed protein product [Spinacia oleracea] (GB:CAA32182.1); contains InterPro domain Photosystem I protein PsaD; (InterPro:IPR003685) -0.0635932966086172 -0.778959028012856 0.4526119790333 1 -0.311709381752589 27.4868200570422 -0.0635932966086172 0.0163941877336219
AT1G02960_at 5.83814435397201 5.26064879791835 5.54499193947465 5.29196260102337 6.65178235639794 5.61099355634525 6.06133604799014 4.60499403103103 4.86455340490177 5.32378920573069 5.14617365854 5.43003205216143 5.19081740850414 5.30573360071554 5.4774647639536 5.56957086859376 5.52313682173516 5.40837706868885 5.95211457955456 0.182998463444981 0.182803209718911 0.180694600353196 0.18642339514713 0.183858124171915 0.190284422653585 0.194085922400328 0.180694600353196 0.188196734203427 0.194863246592238 0.1914498507186 0.182348281609841 0.188659425773082 0.183667734926506 0.186574748857397 0.184832345357466 0.19075847513024 0.195991599469295 0.192624904481404 1 1|0 -|/ 667151 667980 667575.333 666872 669837 - gene protein_coding_gene FALSE TRUE AT1G02960.1|AT1G02960.2|AT1G02960.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02965.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92670.1) 0.167456344607486 0.778928772972754 0.452629070448392 1 -0.311731899085335 10.9888895490644 0.167456344607486 0.328425581137313
AT2G33260_at 1.74839174946071 1.59228970102723 1.76991608405040 2.24290317478337 1.22665669713997 2.14889325791331 1.97047073159107 1.88327455014798 1.65901883136622 2.42913605674982 1.68226940556460 1.65277062194670 2.23520387342829 1.65149423800647 1.78328135114697 1.55953429046459 1.75785983858407 1.61794482719261 1.92478891728520 0.221935321606130 0.225719510965466 0.239180762215232 0.243449206700455 0.233485881237896 0.232938239983666 0.240528901421759 0.236976533715205 0.229172281655457 0.240379972998922 0.221935321606130 0.221935321606130 0.234280916427543 0.230401503018238 0.241458959962704 0.236106478135452 0.248218300952802 0.225441391326843 0.226498388463982 2 2 - 14108122 14108542 14108329.273 14107917 14109329 - gene protein_coding_gene FALSE TRUE AT2G33260.1 tryptophan/tyrosine permease family protein similar to tryptophan/tyrosine permease family protein [Arabidopsis thaliana] (TAIR:AT5G19500.1); similar to putative tyrosine/tryptophan transport protein [Candidatus Protochlamydia amoebophila UWE25] (GB:YP_007167.1); similar to Os07g0225100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059212.1); contains InterPro domain Aromatic amino acid permease; (InterPro:IPR002091); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422) -0.106642087796804 -0.778918444766186 0.452634905064728 1 -0.31173958568213 3.69627919706036 -0.106642087796804 0.182012712643527
AT2G26720_at 0.0044093134559357 0.108102206655594 -0.0387482192295462 0.271033748027809 0.192536990766067 0.387379753782416 0.337972748406239 0.303811048844989 0.0454574581481801 0.214868474662947 0.172011616461163 0.763966786829613 0.52111802873937 0.245974779807313 0.145381285205856 0.203035518984104 0.124697364761977 0.376200411278548 0.317845769816194 0.189371194205625 0.191597982058272 0.187592027959468 0.190636170508826 0.187951320415374 0.185872319695072 0.190465459245188 0.193076929460132 0.190397313638343 0.198312634103729 0.189272917989048 0.187878535626999 0.1967260921002 0.187303549230894 0.195014950608884 0.193670006149983 0.190712797820269 0.185872319695072 0.194230194876403 2 2 + 11391937 11392400 11392187.273 11391860 11392480 + gene protein_coding_gene FALSE TRUE AT2G26720.1 plastocyanin-like domain-containing protein / mavicyanin, putative similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G31050.1); similar to Blue (type 1) copper domain [Medicago truncatula] (GB:ABE91701.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.0704005310643583 0.778786401758343 0.452709503153543 1 -0.311837848545055 0.451698261280822 0.0704005310643583 0.0660896208241124
AT2G45160_at 7.64112146795379 8.06309572438081 7.4097506700059 7.29101324312324 8.05009250927797 7.73658981541332 7.4711456058745 7.65590535056228 8.05976064831608 7.42309071106891 7.82423083154485 8.17482991660576 7.6408086069919 7.54647646131687 7.06932321228138 7.91800912875205 6.59120376153903 7.34467010771222 7.27030322837201 0.143947126015115 0.143837722444839 0.145967485021620 0.138464243123888 0.141799175709713 0.140083183732868 0.138644690193259 0.136262962103009 0.149935814760057 0.145623354754114 0.140209615632809 0.139643278016477 0.146770553938219 0.141497646969896 0.140649926544669 0.138510719326068 0.159478134632857 0.140938748843034 0.141811598219581 2 2 - 18625228 18625692 18625502.182 18624937 18627225 - gene protein_coding_gene FALSE TRUE AT2G45160.1 scarecrow transcription factor family protein similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G60630.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85338.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.078323168490197 -0.777827190495423 0.453251650550371 1 -0.312551224522568 15.2138787312883 -0.078323168490197 0.0985927142364303
AT3G02730_at 12.042685915034 11.8431953483085 11.9865670738415 11.9559028682986 11.9585790109551 11.8639812096615 12.3449587203468 12.3555940967213 12.2305293306832 12.3245603027040 12.6978152237795 12.5753898217037 12.5155232330543 12.6784577371360 12.5404929192636 12.6018143677095 12.3012912124908 12.6682625070816 12.1523971065776 0.0700942418523371 0.0712091700607329 0.0694762125592059 0.0730560949107007 0.0691306113494598 0.073769980871209 0.0718854850046015 0.06879125591238 0.0753401382884388 0.0708641106514481 0.06879125591238 0.06879125591238 0.0691290776056936 0.06886097725142 0.06879125591238 0.069204935439318 0.0740733536464614 0.0733907122089516 0.0754717439306084 3 3|0 -|/ 588582 589499 589124.8 588415 589692 - gene protein_coding_gene FALSE TRUE AT3G02730.1 ATF1/TRXF1 (THIOREDOXIN F-TYPE 1); thiol-disulfide exchange intermediate Identical to Thioredoxin F-type 1, chloroplast precursor (TRX-F1) [Arabidopsis Thaliana] (GB:Q9XFH8;GB:Q9M8R5); similar to ATF2/TRXF2 (THIOREDOXIN F2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G16400.1); similar to Thioredoxin F-type, chloroplast precursor (TRX-F) (GB:O48897); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.0656004925211366 0.777749900934592 0.453295352930044 1 -0.312608671686461 24.4480379259454 0.0656004925211366 0.0386181999803624
AT1G42700_at 2.32333644287018 2.20000107853860 2.67247033813036 2.40238289455238 1.62074228507268 1.94204022225727 1.53806481225066 2.15000808669484 2.19640163510034 2.54608973448837 2.66868100687854 1.72759813002102 2.01783743989611 1.95051607751625 2.74655469363512 1.83044966641166 2.28132585716510 2.26082473413508 2.66136493688028 0.194015974027996 0.197383210180908 0.203266184055701 0.205144787221589 0.195371527032325 0.197150323786083 0.198498468115775 0.196535511767136 0.200303432961243 0.196203966639491 0.208458884712681 0.196058662965372 0.203759735036665 0.193699060615477 0.201732062676308 0.201732890903851 0.198082813422713 0.197014077624377 0.200186215636111 1 1|0 +|/ 16069373 16069846 16069655.3 16069371 16070032 + gene protein_coding_gene FALSE TRUE AT1G42700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40087.1) -0.0879611607671871 -0.777602330458617 0.453378802289106 1 -0.312718342626232 4.43284354647772 -0.0879611607671871 0.130178727408595
AT4G09810_at 3.12813247853640 3.24598911248314 3.29944914232142 3.33593801578948 3.68484481358363 3.20459886707611 4.11693167392766 3.36946107938783 3.04813476954033 2.88975592268755 3.71507199914954 3.57229050022495 3.50800226338051 3.88756413073414 3.06457732825042 3.00778027687868 2.58764817509692 3.05979262491691 3.13214332044927 0.221909096136533 0.220745809757755 0.220745809757755 0.224325419189863 0.220745809757755 0.230197961787835 0.226063544668529 0.227810982768441 0.236727064925420 0.22747625153904 0.223063013412166 0.221236363373165 0.220949067471463 0.232102379156667 0.224002166109809 0.221383997360140 0.225448670152131 0.230063948264078 0.222705425961851 4 4|0 -|/ 6175434 6176089 6175789.222 6175173 6177290 - gene protein_coding_gene FALSE TRUE AT4G09810.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G34020.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE81202.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0965376825227655 0.777324756396136 0.453535793978973 1 -0.312924579203312 6.5850109394989 0.0965376825227655 0.155226279330880
AT3G44580_at 1.26177936009785 1.37672205588765 1.51055668994741 1.27609054562964 1.37371463296703 1.39775824464564 1.51662204246357 1.61748429236568 1.74912288957772 2.08339173498220 1.70800928899091 1.36797097068275 1.43433211649532 2.07514757065642 1.80936781018949 1.35515292622165 1.68082112427605 2.06376690192515 1.46904054307089 0.230223023514084 0.226408611685076 0.218505665786421 0.221715882353970 0.227205670160311 0.217706038190492 0.224775459772912 0.223904119513553 0.22409091795117 0.235867743119589 0.219489735895456 0.214844778179724 0.217460186905932 0.217013643138889 0.223288704373626 0.216924873271237 0.22139876036136 0.22621702809061 0.221562984703921 3 3 - 16171737 16171962 16171837 16171499 16171990 - gene protein_coding_gene FALSE TRUE AT3G44580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44570.1) -0.0669929383017391 -0.776935231046951 0.453756162717932 1 -0.313213885091855 3.14334405527888 -0.0669929383017391 0.0486211190595111
AT3G13630_at 1.88809209795122 1.86651850521689 1.56287252098024 1.85583201160080 1.42647360650371 1.97665049197888 1.69641200837093 1.72194346755339 2.48575934884862 2.03800981932730 1.91945429082263 1.70640394933980 1.86794667713687 1.83659543896725 2.12243100188916 1.4031067588984 2.20856944852315 2.37041737317300 1.48657573209127 0.192978833892104 0.189067430609715 0.201781392831915 0.200057522925027 0.189554666401815 0.195406100960231 0.195035138489188 0.193307102548278 0.192416189323448 0.194084128876573 0.187999735476164 0.191864895648736 0.195775496567504 0.186958063684556 0.189833180592515 0.188965457450862 0.188335833112998 0.194596127983556 0.198532950338652 3 3|0 +|/ 4457047 4457970 4457543.9 4456961 4458141 + gene protein_coding_gene FALSE TRUE AT3G13630.1 unknown protein -0.0809335223762405 -0.776784158720489 0.453841648430646 1 -0.313326053996331 3.71575629748593 -0.0809335223762405 0.108022315804563
AT2G34585_at 9.51241652260036 9.57342693588048 9.22042858579368 9.45974446155554 9.3718659492762 9.40251661422667 9.10793063921324 9.57090907012623 9.63784184458966 9.46944310989127 9.90886333832811 9.9108074447316 9.87869544420817 9.91220899540853 9.59381444270693 9.74680698142333 9.48468472269281 9.76417865988182 9.52835709664306 0.0786293676733638 0.078799980561234 0.0822264016336046 0.0766388475462732 0.077258876253893 0.076927239612361 0.0785856919074982 0.0816316304661048 0.0889091503887967 0.0777452765920914 0.08005087887919 0.0797624270121764 0.0767199376614176 0.0765110761286547 0.0876807664081803 0.0802213943338749 0.0829598301212442 0.0793368817703945 0.076706248676259 2 2 - 14575388 14575527 14575448.273 14575126 14575716 - gene protein_coding_gene FALSE TRUE AT2G34585.1 similar to Os07g0154300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058914.1) 0.0761307986946373 0.776694197956416 0.453892558514986 1 -0.313392839304986 19.0625156076910 0.0761307986946373 0.0909620566963577
AT1G58410_at 2.44525257297453 2.45404564452255 2.98926934767351 3.03325942276881 2.73361396683981 2.9351630685183 2.69968242922145 2.52184886624982 2.92839484528834 2.64275922521187 2.26532636910472 2.12222876362918 2.43412854577742 1.94450598495846 2.22707818999464 2.35502083325983 2.6891555743685 2.45453446822721 2.14081067399754 0.241822176685026 0.235410439197920 0.231469429939822 0.226280475152774 0.231938297414843 0.233386327440164 0.23376523617578 0.224503342289705 0.227782910709315 0.219308276675701 0.226562875368341 0.225430882917796 0.231581455610235 0.233571641078705 0.23456315636042 0.221416868218548 0.238589563627165 0.229183549989775 0.227371378920420 1 1 - 21705061 21705512 21705304.364 21704850 21707920 - gene protein_coding_gene FALSE TRUE AT1G58410.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance protein RXW24L (RXW24L) [Arabidopsis Thaliana] (GB:Q9C646;GB:Q9SM04); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58390.1); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G58400.1); similar to disease resistance protein (CC-NBS-LRR class), putative / PRM1 homolog, putative [Arabidopsis thaliana] (TAIR:AT1G58807.1); similar to Probable disease resistance protein At1g58390 (GB:Q8W474); similar to Disease resistance protein RPH8A (RPP8 homolog A) (GB:P59584); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) 0.0667307497702148 0.776588950177781 0.453952124411132 1 -0.313470964719394 5.16759304284489 0.0667307497702148 0.0471583520679162
AT1G01100_at 11.1376107277055 11.1971414632413 11.0657161424620 11.0598603467591 11.1754064656773 11.0079278581285 11.2150529352605 11.4668607878704 11.2866613077803 11.331852350394 11.4657921463306 11.6394037180390 11.2339391976877 11.2684503906016 11.7552726231967 11.0955861441755 11.1995460262798 11.0267649174942 11.2637896280017 0.070600697761888 0.0685280251857423 0.073081078169498 0.0719051850848377 0.0704080258871127 0.068479856634126 0.0725362060453345 0.0687674155430604 0.0741364596271328 0.0677434388450214 0.0709416237485818 0.0677434388450214 0.0702375706567865 0.0758726754681515 0.0739290398987988 0.0687232447183455 0.0677434388450214 0.0709694771870937 0.0683838780722242 1 1 - 50293 50930 50672.182 50075 51197 - gene protein_coding_gene FALSE TRUE AT1G01100.1|AT1G01100.2|AT1G01100.3|AT1G01100.4 60S acidic ribosomal protein P1 (RPP1A) Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); Identical to 60S acidic ribosomal protein P1-3 (RPP1C) [Arabidopsis Thaliana] (GB:Q8LEQ0;GB:Q9FIK9); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein P2; (InterPro:IPR001859); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813)|Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); Identical to 60S acidic ribosomal protein P1-3 (RPP1C) [Arabidopsis Thaliana] (GB:Q8LEQ0;GB:Q9FIK9); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.0677227375895049 -0.776203112440546 0.454170535715194 1 -0.313757291709051 22.4805448363219 -0.0677227375895049 0.0533487076770548
AT4G33950_at 7.99980157334406 7.91153440742255 7.75512223735278 7.71071888016401 8.71797445010475 8.2722976069567 8.24079115326015 8.20093349325991 7.3827002173092 7.37430613119783 7.61022943523702 7.53206977854448 7.55429743510231 7.49070451835931 7.02403406363338 7.26787639729486 7.5639189979538 7.26145757869718 7.12073601082725 0.191708816408545 0.187122109223192 0.200707523762223 0.193660194009293 0.185231764171550 0.197146269728577 0.195802339959101 0.188465319213692 0.196410188768940 0.188819562369199 0.185447779388378 0.185231764171550 0.192171049662330 0.191384330026137 0.190303566719101 0.185231764171550 0.191801399098571 0.198583583475873 0.188196977682519 4 4|0 +|/ 16273506 16274418 16274025.5 16272258 16274815 + gene protein_coding_gene FALSE TRUE AT4G33950.1 OST1 (OPEN STOMATA 1); kinase/ protein kinase Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network. similar to SNRK2-3/SNRK2.3/SRK2I (SNF1-RELATED PROTEIN KINASE 2-3, SNF1-RELATED PROTEIN KINASE 2.3), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT5G66880.1); similar to Os12g0586100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067155.1); similar to serine/threonine protein kinase SAPK8-like protein [Solanum tuberosum] (GB:ABA40436.1); similar to Os03g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050653.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0731279379904617 0.776123947183282 0.454215357189197 1 -0.313816023984969 15.4539738812569 0.0731279379904617 0.0792996882106623
AT1G51500_at 9.80260368983288 10.0250976821964 10.1867104279576 10.1473074602125 11.0474371968784 10.7273769759257 11.0264202863152 10.8266390739484 11.1426281022470 10.8989483255878 11.3408526366462 11.1845936655293 11.1560098138048 11.0905806330818 10.8769734086269 10.7799214489858 10.4891416832615 11.0963765893353 10.8508195564368 0.098861633204544 0.0962517843296076 0.0958095506164322 0.0970915079956683 0.0928881607804435 0.103307361917149 0.0933310188083726 0.0928881607804435 0.104783063883178 0.0968379088600967 0.0965374767926307 0.0957032395907487 0.0932826296202713 0.105259549620265 0.0965274240530198 0.0931080983254101 0.104047464404764 0.0971783753995375 0.0961270869057844 1 1 - 19101637 19102543 19102017.182 19101465 19104747 - gene protein_coding_gene FALSE TRUE AT1G51500.1 CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones. Identical to White-brown complex homolog protein 12 (Protein ECERIFERUM5) (WBC12) [Arabidopsis Thaliana] (GB:Q9C8K2); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G51460.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Os05g0222200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054952.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1); similar to Os04g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053375.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.0723460361610408 0.775838766637903 0.454376843208409 1 -0.314027553834474 21.4566682139915 0.0723460361610408 0.076106137443014
AT3G13160_at 4.37864187938937 4.77767937705588 3.96232429081308 3.81467189406014 4.15638718232495 4.31179644908809 3.34330158391321 3.36519273427710 2.92552403674154 3.28402176497047 3.09185682926041 2.84342497963867 2.94337880028277 2.69765435193941 3.22946607583280 2.58864190966404 3.42652555485113 2.35704596559789 3.20484717088856 0.202548894181352 0.205897843576729 0.201481331698442 0.200722621199903 0.197237661715322 0.20503524093888 0.207338959657314 0.202016400627669 0.203848314197359 0.206683843236783 0.199795868308054 0.196271458209499 0.195566206467679 0.199202156529386 0.206334484589267 0.205624575405176 0.198189929111746 0.200596663579156 0.201350123688115 3 3 - 4230015 4230538 4230248.727 4229978 4231293 - gene protein_coding_gene FALSE TRUE AT3G13160.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G55890.1); similar to Os01g0785700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044469.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD28713.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0728953110353976 -0.77573364669306 0.454436377637838 1 -0.314105508117484 7.03143957349035 -0.0728953110353976 0.0784805127901315
AT4G33450_at 0.801595277693754 0.929474305118793 0.575680154717435 0.8209326575839 0.543574456780829 1.05311315021259 0.933541372134427 0.992125757787231 1.18200692001310 0.916062823557303 0.820854375132585 1.29594427344447 1.45347263888534 1.39739411674153 1.02664069722653 1.06568791805540 0.994537837086717 0.970094484016802 1.26104336376985 0.203131905910316 0.217026668495675 0.212406205272375 0.209023447042741 0.213943157694510 0.207585541045559 0.205122017031554 0.202868302617674 0.202904139579449 0.206583255983204 0.202868302617674 0.206289234851684 0.208281391787431 0.206548527782127 0.205823754335823 0.204285571638878 0.214148841763598 0.210174230479931 0.206154218658950 4 4 - 16095855 16096282 16096067.091 16095395 16096606 - gene protein_coding_gene FALSE TRUE AT4G33450.1 AtMYB69 (myb domain protein 69); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to MYB54 (myb domain protein 54), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G73410.1); similar to R2R3-MYB transcription factor MYB3 [Pinus taeda] (GB:ABD60282.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0787425749498053 -0.775708242008194 0.454450766274076 1 -0.314124346180884 1.95514597234716 -0.0787425749498053 0.100842569276799
AT1G25340_at 2.01287548179822 1.94478793582341 2.21331508380258 2.23046843628634 1.57430333461901 2.34581263270255 1.80487200305495 2.14951152402026 2.30530193195318 2.03609062885333 1.67489837494851 1.81364462201134 2.00509126698966 2.03746627830700 2.23618111022242 1.73539450622278 1.90056718026631 1.43123660511929 2.12032302506462 0.229722722350954 0.226826574540523 0.222870932232781 0.229608251712691 0.227473715742134 0.227248769160799 0.225637802228201 0.225305767358273 0.223413433237939 0.218655925016016 0.222494460687677 0.218655925016016 0.222651290619807 0.225316926226606 0.224364208537777 0.221441255921287 0.239379701624793 0.226902232631717 0.229726666920556 1 1 + 8885757 8886158 8885962.273 8885068 8886385 + gene protein_coding_gene FALSE TRUE AT1G25340.1|AT1G25340.2 MYB116 (myb domain protein 116); DNA binding / transcription factor putative transcription factor (MYB116) similar to MYB62 (myb domain protein 62), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G68320.1); similar to MYB transcription factor MYB84 [Glycine max] (GB:ABH02839.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0933160333005283 -0.77545788281277 0.454592579725372 1 -0.31430996307148 4.03860089816406 -0.0933160333005283 0.146732920644897
AT3G16230_at 6.78322935408852 6.51154913275906 7.0516336443501 6.9985944621986 7.36568447173292 6.92628980898566 7.04827951199974 6.66582345375212 5.6950087699433 6.71269238810844 6.00773548857644 5.73824481444755 6.07125083497368 6.2655276721253 5.7200129760778 6.75178851306835 6.61975075185202 6.1189992028122 6.58612239988336 0.187010695505359 0.193920185203907 0.184765891931108 0.191186245659109 0.188024664347299 0.193367269856540 0.193125589077295 0.187410732394256 0.197466829351515 0.192983362338988 0.185322138377875 0.183303326006310 0.187042108444574 0.188543157360290 0.191366994523245 0.183303326006310 0.189133727817529 0.186259109186754 0.191650683919452 3 3|0 +|/ 5502280 5503269 5502855.667 5500559 5503549 + gene protein_coding_gene FALSE TRUE AT3G16230.1 nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16220.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE80928.1); similar to Os01g0231900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042499.1); contains InterPro domain Appr>p cyclic nucleotide phosphodiesterase; (InterPro:IPR009097); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.081859748048466 0.77539113227728 0.454630394706519 1 -0.3143594430972 13.1653546305100 0.081859748048466 0.111612021477784
AT1G11420_at 1.09033107257856 1.16866090525944 1.79419798632237 1.31583723165813 1.09863143428338 1.30208069233789 1.55243173124213 1.33037790472978 1.26532896305997 2.00843575266090 1.57204737780553 1.62447935815562 1.31071928935207 1.65994277091244 1.42588926829292 1.28878071783422 1.38919245542328 1.38711732317343 1.84333686684697 0.175705968961844 0.171776874789124 0.174756910869173 0.174737375120417 0.169475780674387 0.183638352316433 0.174775266295155 0.172679838953933 0.178391919434309 0.169475780674387 0.179140977816502 0.176253846171359 0.169475780674387 0.173498268274902 0.180475427665631 0.170184161984948 0.175342830015952 0.172458099650968 0.192946603011312 1 1 - 3844583 3845147 3844955.273 3844581 3846872 - gene protein_coding_gene FALSE TRUE AT1G11420.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G47230.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) -0.0780965123529754 -0.77512062183181 0.454783662860988 1 -0.314559925098617 2.91305441862211 -0.0780965123529754 0.0987570788967006
AT4G13810_at 6.06379791115197 5.76929021830894 7.07673605317703 6.5601849187329 6.88178607932225 5.91680568908413 6.9335766128967 5.71427249253201 5.41768231811986 5.71744170801021 4.48219438210107 3.96700670681334 5.04987894368163 5.21306203321463 3.33864964636015 5.3121741581002 5.75931252146087 4.32208261404359 5.26784523369046 0.263314857827243 0.257403577139471 0.259063170540984 0.261673031267695 0.257403577139471 0.261186883123938 0.261865314075932 0.258589441248707 0.261332194525239 0.262675869457781 0.264367522548011 0.265713215093954 0.2688054470235 0.257403577139471 0.260282459829499 0.257471886270596 0.261629509611351 0.267582906272032 0.259318696083146 4 4 - 8005239 8005633 8005454.364 8005058 8007283 - gene protein_coding_gene FALSE TRUE AT4G13810.1 disease resistance family protein / LRR family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G13880.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13920.1); similar to peru 2 [Lycopersicon peruvianum] (GB:AAV41396.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.149233708930786 -0.775019700507551 0.454840852258812 1 -0.314634704495919 11.4386570197318 -0.149233708930786 0.288095713406274
AT3G49840_at 2.75928638334509 3.05782762307184 3.57680711354373 2.72587230337942 2.75309675312649 3.43806922354579 3.0607118072214 2.79550239478301 3.32159020526949 3.11118266373093 3.60024770263037 3.06614194014288 3.37441762258686 3.19245994475727 3.45872429290157 3.17809363645252 3.35438114644494 3.38725685113741 3.48088958055225 0.197653316341939 0.196905052916683 0.202861815164256 0.213355543735098 0.196563242759563 0.20390530778297 0.195749752068488 0.208055440875948 0.209514031685052 0.195813724182536 0.194004051328101 0.195724515629238 0.192421071851838 0.198465716000931 0.197411530971487 0.196140063743978 0.201319846135227 0.214525167026716 0.195020049760754 3 3|0 +|/ 18498326 18498921 18498589.556 18495527 18499283 + gene protein_coding_gene FALSE TRUE AT3G49840.1 proline-rich family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G67610.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97955.1); similar to Os03g0654500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050797.1); similar to Os03g0430000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050422.1); contains InterPro domain XYPPX repeat; (InterPro:IPR006031) 0.113520269287180 0.774948667736182 0.454881107393845 1 -0.314687332272906 6.3364064712434 0.113520269287180 0.201275313932157
AT1G11700_at 6.53533725229121 6.91616933405134 7.55872879946266 7.54190811668713 6.7574376785668 7.42926268731869 7.85759934230092 8.12671600999938 6.77665926607127 8.09058571936304 7.39386768457781 7.75705979921211 8.52244457300427 7.86242166311165 6.74242280051179 8.49395767611013 8.56231085676774 6.80025491573839 7.77317831756865 0.172024605056479 0.171903625555303 0.16374389720563 0.16280097996856 0.165616073996769 0.167683783017297 0.163427314025322 0.166417169751674 0.178933709703390 0.16619685762799 0.164831262946532 0.164769887778458 0.16280097996856 0.164925460498736 0.171510652260005 0.163768674884959 0.164570264491974 0.167031288925278 0.16280097996856 1 1 + 3945878 3946172 3946014.091 3945737 3946613 + gene protein_coding_gene FALSE TRUE AT1G11700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61930.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); similar to Os07g0516300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059782.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.0914567821548431 0.774830077211726 0.454948319195547 1 -0.314775185779896 14.9972200344832 0.0914567821548431 0.141554973866076
AT4G35970_at 1.66873792202122 1.75520095350135 1.42691445808772 1.50398253447315 1.29267616160181 1.54687340918396 1.83044492138664 2.20906076106491 2.74754958692739 2.03500183544179 2.41219489825324 2.68279378239073 2.05467894376706 2.03556269191900 3.27026632796979 2.36786226103146 1.98842683587902 2.23563662057063 1.53123758084636 0.226915191361070 0.223847519145827 0.227521335577783 0.231211552953754 0.226139942808931 0.225768966231204 0.225813739288558 0.230829811680414 0.227839097430905 0.229188872418417 0.228356218583884 0.234770465291469 0.233297053460528 0.227801982041007 0.230861460769595 0.229985366840633 0.234076718076527 0.225709024566914 0.225742964203932 4 4|0 +|/ 17029088 17030132 17029674.444 17028609 17030296 + gene protein_coding_gene FALSE TRUE AT4G35970.1 APX5; L-ascorbate peroxidase/ peroxidase Encodes a microsomal ascorbate peroxidase APX5. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase 5, peroxisomal precursor (EC 1.11.1.11) (AtAPx04) (APX5) [Arabidopsis Thaliana] (GB:Q7XZP5;GB:O65634); similar to APX3 (ASCORBATE PEROXIDASE 3), L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT4G35000.1); similar to peroxisomal ascorbate peroxidase [Vigna unguiculata] (GB:AAS46016.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.0734590189197186 -0.774183627438488 0.455314810363318 1 -0.315253874927479 3.89699845497899 -0.0734590189197186 0.0814242953904827
AT1G75110_at 1.89787708429201 2.00765112918847 1.79068436121407 1.88450119563691 1.62552249483247 1.93839943702296 2.07572591131219 2.11662378319094 2.16447779650309 1.93145375223016 2.04266480683042 2.52126546124394 2.18862523356648 2.13748814706960 2.36773375682837 2.01932285846734 1.87895355885350 2.41677956317214 2.26242960505251 0.194486741099917 0.195195782207242 0.190929861268833 0.195460604259357 0.189552005433391 0.189766904117452 0.196912517003057 0.199571662809463 0.199115431339091 0.202868195559396 0.195322427549049 0.191060420994328 0.193167284768759 0.189552005433391 0.190815592526696 0.198159119386853 0.197307739803753 0.196306688462972 0.194275796807193 1 1 - 28198020 28198583 28198288.636 28197776 28199594 - gene protein_coding_gene FALSE TRUE AT1G75110.1 RRA2 (REDUCED RESIDUAL ARABINOSE 2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19360.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83249.1); contains InterPro domain Reticulon; (InterPro:IPR003388) -0.0687710747469555 -0.774138103764499 0.455340626214063 1 -0.315287571355319 4.07515212017753 -0.0687710747469555 0.0600518525221736
AT2G34880_at 1.50516850953368 1.59129991498672 1.84094375124065 1.69334541298920 1.59088662534100 1.61752947808220 1.53396318311974 1.62124647631200 1.75506992355287 1.92223300169333 1.79100874619273 1.90052190496939 1.82375954176364 1.44355302745082 2.04573737818170 1.76384018175673 1.77723363664339 2.04529992961620 1.77473621575473 0.211946139702280 0.216251205537865 0.224246028994611 0.211946139702280 0.216580156926731 0.212441177357548 0.214688786853968 0.214491718208814 0.214705780502308 0.217340638134958 0.214117171854428 0.219014065898549 0.22289629471733 0.212845553630073 0.219519051329006 0.213816774284059 0.218340764657734 0.216460584827911 0.218719968224694 2 2|0 -|/ 14718998 14719746 14719353.75 14718959 14723713 - gene protein_coding_gene FALSE TRUE AT2G34880.1 MEE27 (maternal effect embryo arrest 27); transcription factor similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G30810.1); similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G20400.1); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.0646398544567047 0.773739430640533 0.455566748498402 1 -0.315582592335582 3.44490575577838 0.0646398544567047 0.0335262330560531
AT1G10570_at 5.97327064721418 6.23781534575068 5.94350372326498 5.51950771103062 6.31418780934945 6.08451573244309 6.19500553628651 5.66674489301913 5.8898389653632 5.55520942979899 5.81513728406392 6.32257434836206 5.41945124729506 5.34292051014969 5.91596430632816 5.74477034664112 5.46614440829035 5.90907859174328 6.15109455532294 0.172888247170796 0.169828816132263 0.172868212914803 0.172953013490137 0.170755305059620 0.174806841782845 0.173820805466581 0.173347980246396 0.174150820884792 0.174994656863171 0.170975323326426 0.170357401696323 0.175914391030915 0.174283158318333 0.172848191002727 0.169782857010325 0.172912676995345 0.169297871157252 0.170675650239974 1 1|0 +|/ 3489724 3491058 3490671.6 3487595 3491278 + gene protein_coding_gene FALSE TRUE AT1G10570.1|AT1G10570.2 Ulp1 protease family protein similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT1G60220.1); similar to Os06g0487900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057669.1); similar to Ulp1 protease family, C-terminal catalytic domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99256.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.0880781073407135 -0.773430239941961 0.455742167210731 1 -0.315811302785221 11.7955119817220 -0.0880781073407135 0.131972204396505
AT2G20250_at 1.74410406989395 1.53578674448313 1.94284843695615 2.0036725067656 1.98399400234549 1.62235145961165 2.79158494081839 2.4454747319217 2.25177466045234 2.39286733723781 2.39495140724274 2.61856879464714 2.03659752866591 2.32108536962499 2.23978507490281 2.39901416927278 1.71245397209446 2.50408744310991 1.92761360055082 0.210041728890997 0.209378985190455 0.222084762351927 0.208125123259540 0.208125123259540 0.214952818923852 0.213015069430067 0.220608256669964 0.228788902420446 0.210477232206782 0.210660098034662 0.208125123259540 0.208125123259540 0.208125123259540 0.221510635021083 0.213291898884819 0.224645764803036 0.21883187435527 0.214944907093267 2 2 - 8741166 8741680 8741441.182 8740831 8743658 - gene protein_coding_gene FALSE TRUE AT2G20250.1 unknown protein -0.0767274582474005 -0.773361033939018 0.455781437042943 1 -0.315862483817483 4.24326202961222 -0.0767274582474005 0.0944176604870306
AT2G15230_at 7.8223583330703 7.76908561570432 7.74597974697186 7.9494497261884 8.58105901075923 8.10882127448517 7.47474232553743 6.99399575519102 7.64674579158877 7.23497302946018 6.86218715670712 6.62835925911812 7.03912653832346 6.96746552869938 6.94577572544732 7.0884638893652 7.12760042014191 7.03716878635408 7.23901622189905 0.165941880254297 0.173975050684976 0.174039326124619 0.176382552862509 0.176558346145326 0.166628614906282 0.168436668073336 0.178897053440030 0.169013742734466 0.173692907512391 0.172846426711082 0.172947219316677 0.165305521963492 0.172114219367492 0.170057202613913 0.169672673383894 0.167438877967615 0.168429591162023 0.168210305500702 2 0|2 /|+ 6620824 6622149 6621639.2 6619663 6622477 + gene protein_coding_gene FALSE TRUE AT2G15230.1 ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1); galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular. Identical to Triacylglycerol lipase 1 precursor (EC 3.1.1.3) (LIP1) [Arabidopsis Thaliana] (GB:Q71DJ5;GB:Q9SKL5); similar to lipase family protein [Arabidopsis thaliana] (TAIR:AT5G14180.1); similar to Os09g0103100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062552.1); similar to OSJNBa0094P09.4 [Oryza sativa (japonica cultivar-group)] (GB:CAE05065.2); similar to lipase [Ricinus communis] (GB:AAY17358.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain AB-hydrolase associated lipase region; (InterPro:IPR006693) 0.0848609987978195 0.772977750591061 0.455998964393766 1 -0.31614586591142 14.9734848538229 0.0848609987978195 0.122167738514604
AT3G63140_at 11.5352217844108 11.584625086856 11.5431967543388 11.3851454089505 11.5939656739396 11.4555886372812 12.2103828386463 12.3031576726695 12.4477890519807 12.5770369722119 12.6625966286504 12.8651068365669 12.7282061881154 12.7708590714975 12.7958103394491 12.9369046389247 12.4616218579124 12.952463814563 12.4414001990139 0.0661426782456695 0.0636359522978775 0.0638502124586133 0.0647251832924643 0.0635891344970361 0.0665611263448 0.0685141952440601 0.0657297223556904 0.0680748888267165 0.0650266801974961 0.0668355003732341 0.0641131371229477 0.065608276239791 0.067508746714708 0.0655845652122017 0.0635891344970361 0.0692610205901543 0.0635891344970361 0.0652099055248987 3 3|0 -|/ 23337987 23338698 23338386.5 23337845 23339684 - gene protein_coding_gene FALSE TRUE AT3G63140.1 mRNA-binding protein, putative similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT1G09340.1); similar to mRNA-binding protein precursor [Nicotiana tabacum] (GB:AAP87140.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0654593147301648 -0.772867002384957 0.456061830484942 1 -0.316227724816562 24.3316296053177 -0.0654593147301648 0.0406499062755274
AT1G10550_at 1.64615700471904 1.58174560153356 1.26047894921765 1.64385382805221 1.39138228042132 1.56765434483873 1.50557175558950 1.46796484798191 2.69227844499620 1.93685256103945 3.01865817561723 1.96518251715215 2.31207554504740 2.15527231412508 2.02014320760094 1.73588434083735 1.91806037137194 1.94250592913739 1.94745182981217 0.195078367132877 0.201386068095838 0.212483483386821 0.19969248388469 0.196818664637986 0.203977249540604 0.20366434963363 0.203052292270389 0.199111877911771 0.197780755603285 0.202154063379276 0.196841193491591 0.203439344446412 0.194067133599360 0.194144397820434 0.200182577994749 0.200801993733213 0.194067133599360 0.194067133599360 1 1|0 -|/ 3479360 3480168 3479556.3 3479154 3480989 - gene protein_coding_gene FALSE TRUE AT1G10550.1 XTH33 (xyloglucan:xyloglucosyl transferase 33); hydrolase, acting on glycosyl bonds predicted to function in cell wall modification Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 33 precursor (EC 2.4.1.207) (At-XTH33) (XTH-33) (XTH33) [Arabidopsis Thaliana] (GB:Q8LC45;GB:Q9XIJ7); similar to EXGT-A3 (endo-xyloglucan transferase A3), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT2G01850.1); similar to xyloglucan endotransglycosylase hydrolase [Apium graveolens] (GB:ABA54988.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.0716194651641395 -0.772854703337342 0.456068812368738 1 -0.316236814944921 3.6709346159078 -0.0716194651641395 0.0741537208607624
AT2G41820_at 3.09992730285044 2.88850672951980 2.89157089792669 2.09337642127876 2.60771442130161 2.9075234309086 3.63617981767702 3.53090055052908 3.07030738049296 3.4606934030004 4.85508030836391 5.60609944986789 3.58970086056389 4.77273845332215 6.30661212074891 4.43632985139718 4.03825423433814 4.64329837404402 5.24917748409513 0.231946516334918 0.22593780887245 0.234459363804698 0.234852293945216 0.227753279689322 0.225957440882158 0.226860857873727 0.232593739331134 0.23785190198491 0.231148415488385 0.226844466273876 0.233870892565782 0.22593780887245 0.22593780887245 0.235132223617302 0.22593780887245 0.22593780887245 0.22593780887245 0.229788515725582 2 2 + 17456327 17456905 17456653.636 17453822 17457149 + gene protein_coding_gene FALSE TRUE AT2G41820.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to Os07g0207100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059157.1); similar to putative LRR receptor-like kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAC83241.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.0952279050472137 0.772811196580981 0.45609351069556 1 -0.316268969411914 7.31083259438746 0.0952279050472137 0.153110083020710
AT1G43020_at 0.174634005613022 0.425376339159681 0.170027792455312 0.416512411180955 0.371930275871059 0.499748561531727 0.286199723966913 0.527305942399364 0.765946717072389 0.812054111840987 0.86986347163075 0.613360696382606 0.454548007655977 0.881174382541939 0.410914928519665 0.472830705096028 0.701026704136286 0.724452313337005 0.812183618861836 0.215111203164504 0.214133326165344 0.228597927181105 0.222906928579573 0.213904184940265 0.218834884081867 0.216088370241825 0.213700457184037 0.224162140338717 0.223368330982636 0.212769571379891 0.222057454878546 0.224639678307446 0.216644707820062 0.217715296189043 0.219550587999243 0.218296624353395 0.221767859586634 0.222923312025902 1 1|0 +|/ 16159002 16160170 16159822.444 16157843 16160339 + gene protein_coding_gene FALSE TRUE AT1G43020.1|AT1G43020.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76620.1); similar to Os09g0493400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063544.1); similar to Os08g0515700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062234.1); similar to putative ternary complex factor MIP1 [Antirrhinum majus] (GB:AAO59425.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21060.1); similar to Os09g0493400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063544.1); similar to Os08g0515700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062234.1); similar to putative ternary complex factor MIP1 [Antirrhinum majus] (GB:AAO59425.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.0722654953104268 -0.772684903073752 0.45616521105706 1 -0.316362299841184 1.07784165673272 -0.0722654953104268 0.0770231506034901
AT1G80140_at 1.56650299283318 1.48204329081562 1.69183857099584 1.79752324002743 1.41194021507753 1.50729444721178 1.60151191914084 1.72080971905373 1.68214069312977 2.08733881500627 1.41750546047273 1.36545513243583 1.7701760710986 1.88297131505701 1.61982468157639 1.71054392964493 2.04926757250711 2.12676562801103 1.87575824401359 0.190474426283846 0.188995054076540 0.185990382655862 0.186912635376537 0.191054965006851 0.184458881752833 0.194013513888663 0.189614463718246 0.188944582078220 0.191948835899547 0.191952566043194 0.189431305685584 0.184697577269285 0.184134286702425 0.193971906227857 0.190553793538672 0.191749611171641 0.193030079831011 0.199873483051906 1 1|0 +|/ 30152238 30153041 30152661.5 30151503 30153072 + gene protein_coding_gene FALSE TRUE AT1G80140.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] (TAIR:AT1G70500.1); similar to Os01g0296200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042805.1); similar to putative polygalacturonase PG1 [Oryza sativa (japonica cultivar-group)] (GB:BAD86981.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) -0.0647500278327246 -0.772567055988004 0.456232122680996 1 -0.316449376179289 3.40971287001133 -0.0647500278327246 0.035307852924557
AT3G60800_at 6.81064525383909 6.87716612557985 7.07620030097571 6.77423680095484 6.64700725906097 6.277559712258 5.82638783643997 6.58764187523793 6.06548130389103 5.19180496658472 5.74430457719492 5.49876020285692 5.31943008701427 5.92374164712066 5.79810857559352 5.8585088036907 5.15330417662827 5.36072011264427 5.41684191917678 0.218802624263058 0.2293259567509 0.220818752220297 0.217712807930653 0.230003382411112 0.222576367750051 0.216588882928235 0.215465588436404 0.218407539769671 0.216037645270356 0.216514651817076 0.219374140294714 0.220153495012143 0.224575777568308 0.22250072836916 0.214668051415542 0.237153687194471 0.219626781834971 0.214668051415542 3 3|0 -|/ 22478495 22479800 22479229 22478148 22480567 - gene protein_coding_gene FALSE TRUE AT3G60800.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT4G22750.1); similar to DHHC zinc finger domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99421.1); similar to Os03g0804300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051618.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.0961788942484684 0.77249838066485 0.456271118300609 1 -0.316500114426886 12.1796818969069 0.0961788942484684 0.155903541778358
AT3G27230_at 5.94653469372657 6.66990792855409 6.38217156128359 6.39942029120745 6.05070659025136 5.69687759827778 6.78057508462754 6.58479476034279 5.55151419190255 5.89619355582114 6.44895989283069 6.97813405670415 6.1118433590819 6.34429645347326 6.18984131920517 6.26658286934096 5.88889106084945 6.36089837729929 5.88297340846316 0.218994225452055 0.217811117921306 0.219298830866859 0.219334772897221 0.213172030305339 0.213783035964225 0.222553455668907 0.225006437793298 0.240696710041428 0.229829106298806 0.218080669357560 0.220428838505545 0.214254643636756 0.217717616207035 0.22572065689267 0.213172030305339 0.225347295449874 0.221464941032013 0.229647589956028 3 3 + 10056136 10056652 10056409.182 10055166 10056932 + gene protein_coding_gene FALSE TRUE AT3G27230.1 similar to ATRAD3 (Arabidopsis thaliana Ras Associated with Diabetes protein 3) [Arabidopsis thaliana] (TAIR:AT5G40830.2); similar to hypothetical protein [Prunus persica] (GB:AAO14627.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) 0.0918140491557273 0.772382488756152 0.456336929571396 1 -0.316585727835889 12.3641608846974 0.0918140491557273 0.143446684842089
AT1G51915_at 0.889543950988645 1.58949374781078 1.5764651124974 1.57334818744407 0.843545102689465 1.11382107027132 1.31226099442007 1.30036938888257 1.06591484642264 1.05766840514450 1.07527503726896 1.01940108739753 0.832103255306795 0.531173711622468 0.860014135325125 1.01244325329969 1.19050782214063 1.23796362369670 1.32114961926639 0.230428898004758 0.224732229063287 0.223472236984660 0.245899987807287 0.223472236984660 0.244600236722886 0.227593180878107 0.227454383659821 0.236806737030531 0.226016287957274 0.223472236984660 0.227182935218680 0.232151757016704 0.227374711360937 0.226157626858742 0.236271655501340 0.233611674940477 0.234374231606594 0.231363558966231 1 1|0 +|/ 19297261 19297440 19297323.625 19297147 19297638 + gene protein_coding_gene FALSE TRUE AT1G51915.1 cryptdin protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51913.1) -0.0872531009102802 -0.772252286204674 0.456410874668207 1 -0.316681899409426 2.33390820989308 -0.0872531009102802 0.129863653815608
AT1G03680_at 11.7730306192792 11.9323946633929 11.6153027887411 11.6031952635172 11.9063548504831 11.7956032383522 11.9465425869442 12.0998254974040 11.5289919143264 11.7640794565680 11.9929891261143 12.0514136300559 11.9847562294952 11.9871351426441 12.0315019408698 12.1629153326237 11.8174472951083 11.9426338759624 11.6781973725926 0.069564043549994 0.0671454065646357 0.0693600165008671 0.0693041169020355 0.069072356690295 0.0702039341142353 0.0680889824882847 0.0695181509321683 0.0760858676564182 0.0678284104940433 0.0729740288172792 0.0671454065646357 0.0699384123687826 0.0718573040438472 0.0739919556612235 0.0671454065646357 0.0739719229428647 0.0678233519678937 0.0700201700441225 1 1 - 917022 917811 917475.545 916845 918064 - gene protein_coding_gene FALSE TRUE AT1G03680.1 ATHM1 (Arabidopsis thioredoxin M-type 1); thiol-disulfide exchange intermediate encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. Identical to Thioredoxin M-type 1, chloroplast precursor (TRX-M1) [Arabidopsis Thaliana] (GB:O48737); similar to ATHM2 (Arabidopsis thioredoxin M-type 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT4G03520.1); similar to Thioredoxin M-type, chloroplast precursor (TRX-M) (GB:Q9XGS0); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) 0.0657125919826098 0.77223418754815 0.456421153931011 1 -0.316695266488893 23.6607505149 0.0657125919826098 0.0428480904665941
AT1G09920_at 8.03809494913894 8.39144492464466 8.29215123743365 8.22195745096287 8.43623332002735 8.30914319452144 8.2406862299636 8.24136518843038 7.65507355092968 7.85934323597077 7.93022195817792 7.91494085804118 7.35924821451206 7.88258199395308 7.61835614711585 7.74810018380215 7.86600733747409 7.81502076997324 7.62810583075199 0.147011475111235 0.143265453769537 0.141850204695741 0.146397853237099 0.144135414533715 0.143784649856936 0.140474957919976 0.144678789625774 0.147689043673259 0.148437057798278 0.144586280279117 0.139812603591070 0.152030482324836 0.151720285598857 0.139805613216779 0.141567096712081 0.156020839490248 0.145531815240628 0.152591057007714 1 1|0 -|/ 3224877 3226827 3225525.333 3224686 3227072 - gene protein_coding_gene FALSE TRUE AT1G09920.1 TRAF-type zinc finger-related similar to PRLI-interacting factor K [Arabidopsis thaliana] (TAIR:AT4G15420.1); similar to TRAF-type zinc finger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96034.1); contains domain SUBFAMILY NOT NAMED (PTHR16295:SF6); contains domain FAMILY NOT NAMED (PTHR16295); contains domain Glucocorticoid receptor-like (DNA-binding domain) (SSF57716); contains domain Cysteine-rich DNA binding domain, (DM domain) (SSF82927) 0.0698044773444915 0.77214699096543 0.456470679944763 1 -0.316759663151244 16.0118765062730 0.0698044773444915 0.0661095393689185
AT3G30845_at 1.46667454993816 1.75109157454633 1.59679222937461 1.73385249906992 1.33275147253345 1.96047087940316 1.73403705200936 1.57439225156531 2.18762131511692 1.63307043866342 1.82597134325117 1.49723495963214 1.99889504605269 1.65091296315458 1.57470895126782 1.53044997093134 1.62481137217005 1.54890932872536 1.73536826609628 0.16787293835364 0.161980550167759 0.169213051553813 0.166565354531613 0.161980550167759 0.166094502753879 0.164935186734319 0.167451016800802 0.16851832222992 0.169203754174912 0.161980550167759 0.164199234137161 0.172743854517141 0.164344585055275 0.166642479378693 0.170591066812334 0.184098890117606 0.161980550167759 0.163045356232076 3 3 - 12626922 12627209 12627097.727 12626916 12627233 - gene protein_coding_gene FALSE TRUE AT3G30845.1 unknown protein -0.0855576758234511 -0.772012830731636 0.456546887167606 1 -0.31685873092586 3.39801118781688 -0.0855576758234511 0.124695063378423
AT2G13600_at 2.05350410992898 2.29560019902885 1.99157612618284 1.68963508564571 2.33237100584578 1.75899584397893 2.33841499443406 2.03726425932771 2.12991736797626 1.89294656121202 1.54544338494832 2.04559123022319 2.29683932611825 2.17715533441242 1.80169447708452 1.52779391737459 2.02622587273131 2.32785103960639 1.69338997980449 0.220445211810667 0.207897449806749 0.220213609270258 0.214513516607324 0.212480289388175 0.211163987601967 0.236206504532730 0.220680679175547 0.220454702721248 0.213657316615545 0.214877006318289 0.210901275959195 0.229568265860762 0.209827476296190 0.21659558760769 0.206792088918585 0.218862762288790 0.222640978294104 0.206792088918585 2 2 + 5680113 5680633 5680352 5678575 5680668 + gene protein_coding_gene FALSE TRUE AT2G13600.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to OSJNBa0006B20.5 [Oryza sativa (japonica cultivar-group)] (GB:CAD40814.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE89224.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0874475110592328 -0.771945216267745 0.456585297401768 1 -0.316908653595382 3.99916634928492 -0.0874475110592328 0.130565099133605
AT1G79840_at 2.32184204489534 1.96287552683399 2.21782845787306 1.99771303626469 1.89081705077429 2.16788146515798 1.70746485447995 1.86713788925686 2.747156550305 2.28755208181017 2.24509526952339 2.31098481600697 2.13033266003022 2.25705563838322 2.26948456792283 2.55216607965014 2.60861484606795 2.23844225331615 2.71085150897717 0.213359404060752 0.214329612118788 0.222363703751853 0.212660495729199 0.216436553949655 0.218016939368219 0.211879723291658 0.213141011262119 0.219316444934629 0.21603529337188 0.22320065626481 0.216796545350481 0.222790209732102 0.222845731364574 0.213459787971101 0.214002188900147 0.217169903650093 0.212201512387816 0.219325714400196 1 1|0 +|/ 30045157 30045833 30045573 30042308 30045984 + gene protein_coding_gene FALSE TRUE AT1G79840.1 GL2 (GLABRA 2); DNA binding / transcription factor Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Identical to Homeobox protein GLABRA2 (Homeobox-leucine zipper protein ATHB-10) (HD-ZIP protein ATHB-10) (GL2) [Arabidopsis Thaliana] (GB:P46607;GB:Q39018); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to BNLGHi8377 [Gossypium hirsutum] (GB:AAK19610.1); similar to homeodomain protein GhHOX1 [Gossypium hirsutum] (GB:AAM97321.1); similar to homeodomain protein 1 [Helianthus annuus] (GB:AAC37514.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.0758007201752668 -0.771875304237548 0.456625015013362 1 -0.316960268572871 4.47088273905538 -0.0758007201752668 0.0915012404319244
AT2G33290_at 3.60189222333327 3.58434603246179 3.23615833160164 3.21222457098255 3.19742367792401 3.64812323179089 3.49520197823608 3.56901440581027 3.44563550568855 2.94717841456521 3.39823469608714 3.25474703428853 3.42753424823674 3.3843357061769 3.31521327305542 3.39943137167201 3.32059863977458 3.64996355697211 3.50719122218597 0.207024115262966 0.199623182839492 0.208081085174923 0.197709152953035 0.195103544215047 0.206294308244546 0.194278725669924 0.195622346698407 0.200925179614111 0.197304529177326 0.199328737192536 0.196659054224926 0.202720875428105 0.193994273543077 0.202757331499864 0.198691168113492 0.195423939731663 0.204103499038566 0.20323361897155 2 2 + 14118576 14119078 14118871.818 14117041 14119464 + gene protein_coding_gene FALSE TRUE AT2G33290.1 SUVH2 (SU(VAR)3-9 HOMOLOG 2) Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and this subfamily of the SET proteins have an additional conserved RING finger motif called YDG domain. Gene is expressed in rosettes, stems, floral buds, and flowers by RT-PCR. Identical to Histone-lysine N-methyltransferase, H3 lysine-9, H3 lysine-27, H4 lysine-20 and cytosine specific SUVH2 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 2) (H3-K9-HMTase 2) (H3-K27-HMTase 2) (H4-K20-HMTase 2) (Cytosine-HMTase 2) (Suppressor of variegation 3-9 homolog protein 2) (Su(var)3-9 homolog protein 2) (Protein SET DOMAIN GROUP 3) (SUVH2) [Arabidopsis Thaliana] (GB:O22781); similar to SUVH9 (SU(VAR)3-9 HOMOLOG 9), histone-lysine N-methyltransferase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G13460.2); similar to Os07g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059503.1); similar to Os08g0565700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062536.1); similar to SRA-YDG; SET-related re (GB:ABE79848.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) -0.0726878026246135 -0.77170162367809 0.456723694000958 1 -0.317088476288703 6.78992757148231 -0.0726878026246135 0.0792014037446014
AT1G22010_at 1.10134184737161 0.829196474662235 0.728574042631516 1.21918292161832 0.717793987729479 0.798811706155776 1.26604804466544 0.910954316574149 0.797152372008581 1.02232338311572 0.966363799024846 0.752210379645857 0.729185221567875 0.712440676028096 0.941718213376924 0.829162820951454 1.51379011486468 1.44214341214282 1.15207358539445 0.186654518875165 0.184447599848646 0.188026570172411 0.184006243821949 0.183289281926531 0.181360832329193 0.181115383513067 0.183062388276848 0.187149528620752 0.183119233913803 0.182870085670544 0.183290316243481 0.196054674328658 0.183291441374711 0.184245983446229 0.187036836335852 0.181115383513067 0.181115383513067 0.181115383513067 1 1 + 7749668 7750022 7749812.182 7749560 7750051 + gene protein_coding_gene FALSE TRUE AT1G22010.1 contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.0827170617119261 -0.77161745581331 0.456771520051463 1 -0.317150598200586 1.93468455594602 -0.0827170617119261 0.115754763088766
AT3G14740_at 2.89060006970937 3.01709548255115 3.28866009218603 3.29426682754612 2.05459192791837 2.80027657647920 3.04113256494848 3.26047644317695 3.25882034871297 2.95661272128518 3.24833412186768 3.37686906635787 2.65639764461790 3.49275577759852 3.25003140349068 2.94893549444033 2.89682309936661 3.02823643501212 3.0785669631216 0.207571935617763 0.207758537109462 0.20577870990718 0.207239844873352 0.20577870990718 0.212406138470613 0.208798151553225 0.211637943128290 0.20577870990718 0.215188703414472 0.209714803234221 0.210107256154829 0.214074566003523 0.206354753562592 0.210516167158246 0.207886600225059 0.217977902082492 0.206788617830375 0.207975745135617 3 3 - 4952367 4952845 4952625.091 4952011 4953430 - gene protein_coding_gene FALSE TRUE AT3G14740.1|AT3G14740.2 PHD finger family protein similar to ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX), histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding [Arabidopsis thaliana] (TAIR:AT2G31650.1); similar to PHD finger protein 17 [Danio rerio] (GB:NP_956099.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965)|similar to ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX), histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding [Arabidopsis thaliana] (TAIR:AT2G31650.1); similar to hypothetical protein DEHA0G14685g [Debaryomyces hansenii CBS767] (GB:XP_462140.1); similar to Brpf1 protein-like protein [Oikopleura dioica] (GB:AAS21398.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0892897073800041 -0.771522903202463 0.456825250780679 1 -0.317220377619568 6.0610364437564 -0.0892897073800041 0.136284240299309
AT3G08560_at 1.33013215758715 1.18387842967369 1.49193370198468 1.18972011272622 0.99526379979714 1.10989228330250 0.928909680453554 1.25322778497372 1.74781492449566 1.37705291668988 1.63855887297565 0.965771432720453 1.40883448546214 0.941460266667924 1.30904200425757 1.52255621993839 1.32668576350526 1.35199749639774 1.30894713525667 0.225459195824019 0.209129289775372 0.220563524233427 0.217668678828825 0.210051061962982 0.216138980291514 0.209129289775372 0.211587951673974 0.214341591368471 0.212209442560586 0.212543710872612 0.209129289775372 0.219111174739351 0.220595569361573 0.21491994674285 0.214457794048018 0.211373012217621 0.215558862586695 0.213556575073160 3 3|0 +|/ 2600262 2601757 2600765.111 2600136 2601913 + gene protein_coding_gene FALSE TRUE AT3G08560.1 VHA-E2 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 2); hydrogen-exporting ATPase, phosphorylative mechanism similar to TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) [Arabidopsis thaliana] (TAIR:AT4G11150.1); similar to vacuolar ATPase subunit E-like protein [Thellun (GB:AAM19709.1); contains InterPro domain ATPase, V1/A1 complex, subunit E; (InterPro:IPR002842) -0.0735797732297431 -0.770914873475871 0.457170868388179 1 -0.317668919424592 2.57839556542302 -0.0735797732297431 0.083182451622276
AT2G47940_at 9.20512920752257 9.07145460752759 8.64405979902564 8.54562010252716 9.61486306754038 8.89764615797832 9.6597610094152 9.35907195111545 9.8706568312414 9.76016105935939 10.1877380303434 10.4375566133423 9.82645922679387 10.0422754092803 10.4664566407358 10.1051668955033 9.30352331503704 9.812442068396 9.77994235683479 0.111902362360672 0.11287072468377 0.120728423238171 0.126347166661076 0.115659978730838 0.127243755810281 0.115768724171251 0.113170539245661 0.114120767200065 0.117433344764159 0.116095793478297 0.116599697040194 0.115840102023469 0.116225772833729 0.111197921485674 0.111995443027004 0.122482250155205 0.114443914592247 0.119510740376796 2 2|0 -|/ 19625473 19626352 19625839.6 19625056 19629302 - gene protein_coding_gene FALSE TRUE AT2G47940.1 DEGP2 (DEGP PROTEASE 2); serine-type peptidase/ trypsin Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. Identical to Protease Do-like 2, chloroplast precursor (EC 3.4.21.-) (DEGP2) [Arabidopsis Thaliana] (GB:O82261;GB:Q9FPE9); similar to DEGP9 (DEGP PROTEASE 9), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT5G40200.1); similar to putative DegP2 protease [Oryza sativa (japonica cultivar-group)] (GB:AAT93972.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.0895956931717583 -0.770319362846916 0.457509532489191 1 -0.318107921336788 19.0378452498686 -0.0895956931717583 0.137616358845858
AT2G25790_at 1.76487688019592 2.23651458494804 1.75239935924825 2.12298605778126 2.32366489782410 1.87630740726302 2.27328023342368 2.20870693714116 2.71453078347893 2.77642141664396 2.50992937123908 2.5698078174735 2.63557930984011 2.80028254633131 3.48076318657414 2.77850848097551 2.05683353277774 3.19327503892441 2.98481517376940 0.195393736991254 0.184635510100642 0.200589897176851 0.200288387230067 0.190170758889192 0.189810514286493 0.192091808273079 0.190787295105328 0.188535800098893 0.192294616473914 0.189925350399189 0.183983992323346 0.188440004055443 0.186893696974145 0.201860263676107 0.185547640655255 0.189790551211795 0.189168906523638 0.186566488957213 2 2 + 11010067 11011056 11010639.727 11007677 11011313 + gene protein_coding_gene FALSE TRUE AT2G25790.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G28650.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78378.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.087069304589248 -0.770311691902814 0.457513895968839 1 -0.318113574280269 4.85903114563538 -0.087069304589248 0.129972585222472
AT1G10520_at 0.620855720947254 0.298447005117665 0.197970788865977 0.523652325991132 0.733540185285827 0.211615845858687 0.777734437633047 0.361914663701841 0.163398433044462 0.261047408313393 0.411895184387509 0.365269858602259 0.495723833212952 0.325614761572292 0.415978609564389 0.350995596899817 0.603785240829915 0.354969402097362 -0.0144573944981667 0.186894936825555 0.193422814353996 0.194359900848427 0.191915905848422 0.191368730872260 0.188989517350953 0.187847633370539 0.186077188184791 0.190270768792238 0.195986412532184 0.195265346438925 0.191124291588602 0.197738053664134 0.195010863920291 0.186077188184791 0.186279379140495 0.193278982958375 0.190366569774147 0.193648831831526 1 1|0 +|/ 3467742 3469214 3468451.6 3465965 3469249 + gene protein_coding_gene FALSE TRUE AT1G10520.1 DNA polymerase lambda (POLL) similar to DNA polymerase lambda [Oryza sativa (japonica cultivar-group)] (GB:BAD18976.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain DNA-directed DNA polymerase X, beta-like; (InterPro:IPR002008); contains InterPro domain DNA polymerase beta, N-terminal-like; (InterPro:IPR010996); contains InterPro domain DNA polymerase X; (InterPro:IPR002054) 0.090411537463185 0.770173707994985 0.457592390211423 1 -0.318215250121399 0.741812309933033 0.090411537463185 0.140091672531589
AT2G42800_at 1.00092764074879 1.8479527016414 1.60353333481069 1.76539331017657 1.79458812987235 1.47622382852041 1.71624601612788 1.46178982066049 1.91555227681788 1.91749411648591 1.73098602079528 1.44911148906577 1.4539116050479 1.41426089185341 1.52327745941040 1.57441284657884 1.21697859445340 2.05531267908707 1.87790349507452 0.202489271524188 0.195759750364800 0.194814195696591 0.201371411356579 0.192702558918423 0.196504901567397 0.199133280994708 0.192702558918423 0.201819866079245 0.195021379254196 0.193633663474574 0.199767253827537 0.195158612035614 0.193397677657555 0.195976631737626 0.202432071926088 0.197929607687616 0.201780600641835 0.205783483110376 2 2 - 17815257 17815761 17815486.545 17815019 17816667 - gene protein_coding_gene FALSE TRUE AT2G42800.1 leucine-rich repeat family protein similar to TMM (TOO MANY MOUTHS), protein binding [Arabidopsis thaliana] (TAIR:AT1G80080.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS72353.1); similar to putative leucine-rich repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47071.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.0990814542279469 -0.769445757219139 0.458006639052557 1 -0.31875138530274 3.31129755335946 -0.0990814542279469 0.165061302735428
AT4G15350_at 1.30192465798583 1.52838648032466 1.58011218948433 1.76942994617123 1.21864969977325 1.86010224459108 1.17569336079978 1.36108812626996 1.97065882869875 1.42526932304076 1.65687293225635 1.46681968914709 1.98691107741709 1.33569493173315 2.01108506554905 1.37538995978046 1.41564034954366 1.64994935405219 1.72226975956298 0.199894983621538 0.199625724426946 0.205218835093345 0.196337172346171 0.202048008934555 0.199536593308081 0.203682410403602 0.202686308617301 0.206383951678738 0.205613449017721 0.199594036113685 0.197807326983982 0.205543571411555 0.199290605513305 0.202277456281918 0.196337172346171 0.202208527439377 0.201681736131608 0.203477082117381 4 4 + 8763988 8764488 8764270.273 8762953 8764594 + gene protein_coding_gene FALSE TRUE AT4G15350.1 CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2); oxygen binding member of CYP705A similar to CYP705A30 (cytochrome P450, family 705, subfamily A, polypeptide 30), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20940.1); similar to CYP705A32 (cytochrome P450, family 705, subfamily A, polypeptide 32), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20950.1); similar to CYP705A5 (cytochrome P450, family 705, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G47990.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.085764906580314 0.769153211753271 0.45817318315389 1 -0.318966717861453 3.13360403335954 0.085764906580314 0.126336868807855
AT3G58740_at 2.76081967793912 2.57334816121812 2.88595138087703 2.44207030430782 2.39037042157239 2.70599957380993 2.57810104048109 2.86713603905071 2.77705448850170 2.73025652353734 2.44603883467919 2.43571671377403 2.42781680401214 2.58218068772217 2.56474555301353 2.63206475444156 2.40644099844132 3.10299265737502 2.43770945920401 0.232241927047749 0.223032051372100 0.225380184812823 0.226052258622347 0.22439209886544 0.225572375731299 0.222180123001619 0.230797955466708 0.224106724455704 0.223165278911296 0.222180123001619 0.224844183641272 0.229867946148271 0.235566442016804 0.226639396262938 0.228983244240102 0.230399626861846 0.222180123001619 0.223117581317532 3 0|3 /|- 21732068 21733094 21732731.778 21731750 21734767 - gene protein_coding_gene FALSE TRUE AT3G58740.1 CSY1 (CITRATE SYNTHASE 1); citrate (SI)-synthase Encodes a peroxisomal citrate synthase that is expressed in siliques and developing seeds. Identical to Citrate synthase 1, peroxisomal precursor (EC 2.3.3.1) (CSY1) [Arabidopsis Thaliana] (GB:Q9LXS7); similar to CSY3 (CITRATE SYNTHASE 3), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G42790.1); similar to CSY2 (CITRATE SYNTHASE 2), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58750.1); similar to Os02g0232400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046373.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); contains InterPro domain Citrate synthase; (InterPro:IPR002020) -0.0811719205895569 -0.769113203448985 0.458195962620646 1 -0.318996160926342 5.26201946616372 -0.0811719205895569 0.111528188892448
AT1G61440_at 2.2336391392278 2.15592925962340 2.72616044281241 2.68502063178567 2.06057491127386 2.67147352343029 2.23228629669676 2.35666399764591 2.41804875243480 2.45979656995134 2.45558432370222 2.00495108929891 2.44763871674596 2.24527945862799 2.30295907284821 1.99447471472966 2.17305810776210 2.21889010746603 2.20440458037778 0.194584744267777 0.197588337003652 0.195203708871065 0.200354080147101 0.191683131486696 0.193110204862070 0.192467318308933 0.194873311395027 0.199956144943399 0.200695492055952 0.191834639471085 0.191683131486696 0.212499506082773 0.191683131486696 0.194964986183397 0.194725493141863 0.198217853450591 0.197089152372338 0.198039220930665 1 1 - 22672956 22673633 22673250.545 22672910 22675988 - gene protein_coding_gene FALSE TRUE AT1G61440.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61400.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61490.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61430.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.080391092668373 0.768946320949877 0.458290988081695 1 -0.319118959050513 4.68577073355482 0.080391092668373 0.108955501680974
AT2G25500_at 1.24811107351904 1.48408440587915 1.69158864187358 1.37153283834194 1.26487604746400 1.41017318304893 1.55187474549389 1.35650281576955 1.63863562579602 1.49916298770852 1.30348623849103 1.44478902514215 1.89344497450935 1.48587746772358 1.69911853955597 1.66467226899717 1.8826557517104 1.64815425197801 1.38216962071745 0.146564800453391 0.160459183143775 0.152360395591785 0.148161626208541 0.155176515256004 0.149053097173186 0.153548315013609 0.146073942362518 0.171531165369877 0.157877096466148 0.156736881328146 0.146714694053294 0.156322243313520 0.151523879809365 0.149507806913406 0.146073942362518 0.151035049779562 0.155121021496228 0.153420424774940 2 2 - 10861744 10861994 10861871.545 10861730 10862023 - gene protein_coding_gene FALSE TRUE AT2G25500.1 similar to Maf family protein [Arabidopsis thaliana] (TAIR:AT5G66550.1); similar to Maf-like protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98623.1); similar to Maf-like protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98624.1); similar to putative Maf-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAR01628.1); contains InterPro domain Maf-like protein; (InterPro:IPR003697) 0.0727590771030807 0.768680146463892 0.458442578062484 1 -0.319314770746247 2.98955841534249 0.0727590771030807 0.080688874313228
AT1G33290_at 7.67637774116608 7.5201750052557 7.42582936503448 7.36280834524552 8.05599872314334 7.34978113027134 7.83812076634127 7.86219390336635 7.82598949969162 7.77823729434301 7.95342028965054 8.16626085039096 7.67978914515794 7.9741336717 8.25496022619971 8.22058508272905 7.35559974571746 7.52561866600747 8.05572088123963 0.199030146963833 0.194737325691703 0.207245121141903 0.195949393644815 0.192983425003685 0.223475074774873 0.198782069371533 0.198614583969334 0.215406839243872 0.200307994322961 0.194230542137999 0.192983425003685 0.199672519622517 0.223957779221854 0.195587762852655 0.195327257077237 0.221799784426220 0.211129798615395 0.208802032281989 1 1|0 +|/ 12074987 12075942 12075359.2 12074079 12076084 + gene protein_coding_gene FALSE TRUE AT1G33290.1|AT1G33290.2 sporulation protein-related similar to sporulation protein-related [Arabidopsis thaliana] (TAIR:AT3G10420.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96147.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593)|similar to sporulation protein-related [Arabidopsis thaliana] (TAIR:AT3G10420.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96147.1); similar to Os12g0209000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066391.1); contains domain ATP_GTP_A2 (PS50101); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.0854828642529806 -0.768417026329702 0.458592460122962 1 -0.319508276257246 15.5253832148708 -0.0854828642529806 0.125711289835483
AT1G24110_at 0.949278397288452 0.940283041342952 1.20287976617305 0.983784200314788 1.15103427925319 1.36306012864034 1.24720100068216 1.32165370561626 1.06221921322135 0.760567015293562 0.747904885749029 1.19962443585766 0.806946564272902 0.885009658825468 0.896197306502893 0.848629953269166 1.26696673073989 1.11194696997211 0.866910849839126 0.157474385634897 0.157474385634897 0.164107055108462 0.160268002019233 0.162512478465763 0.169492851338570 0.162483434611312 0.167728816992726 0.159173906781125 0.168611352770526 0.162449856558716 0.160068959853342 0.166069806658286 0.159737343731538 0.159935755759481 0.158327686830343 0.162645574953706 0.16637719119049 0.160896151517385 1 1 + 8528262 8528687 8528480.545 8527827 8528807 + gene protein_coding_gene FALSE TRUE AT1G24110.1 peroxidase, putative Identical to Peroxidase 6 precursor (EC 1.11.1.7) (Atperox P6) (PER6) [Arabidopsis Thaliana] (GB:O48677;GB:Q4PT24); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G47000.1); similar to Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] (GB:ABE90190.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.0672115888634239 0.768376062432764 0.458615797357573 1 -0.319538396891749 2.07838131788056 0.0672115888634239 0.054335292472708
AT4G18550_at 1.31776881277861 1.90726503711454 1.88835591054279 2.03124400308072 1.45738206986158 1.67119697841124 2.22512270371659 1.91038008287048 2.27029833382915 1.80639514805559 2.18291607911059 1.70499815921981 2.27834949863806 1.95584846300599 2.06441180621908 1.79325525816964 2.09509524852540 2.40935456855361 2.38000194579154 0.217710986072955 0.212223013745143 0.222726888602228 0.214810280303862 0.212439258116631 0.219205667727869 0.212263828794482 0.209397375017776 0.220980430131089 0.221217694352389 0.212811409237696 0.208108958792146 0.210009856015358 0.211526774922316 0.215818721103945 0.211589062767279 0.217956653533664 0.211168648953010 0.214132192020951 4 4 - 10225214 10225625 10225408.727 10224932 10226873 - gene protein_coding_gene FALSE TRUE AT4G18550.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06250.1); similar to Ipomoea nil Pn47p (GB:AAB07724.1); similar to Os05g0574000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056386.1); similar to Os05g0574100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056387.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.084896296345562 -0.7682843990062 0.458668020996992 1 -0.319605791570731 3.90746967199992 -0.084896296345562 0.123912763194644
AT3G30220_at 0.923263529139902 1.05240885864438 1.21760173006689 1.38733521906517 1.16200021520497 1.32504541455268 1.12688727930829 1.09369249601200 1.36918799815208 1.64841797860466 0.991939849548571 1.52136515278694 1.20265027061921 1.35603186079147 0.825224713002166 1.29677819336305 1.50064382219281 1.42134899045310 1.84342220167691 0.188525389874113 0.193397351227404 0.194210850437761 0.193397845090315 0.200416226811051 0.190885104696186 0.189997343004265 0.191664326064741 0.194149373097731 0.205042374601320 0.191540092936318 0.193702457091277 0.193572551793282 0.198804982308528 0.206867780350487 0.190367826205798 0.206369849235045 0.189824809973578 0.199200240101086 3 3|0 -|/ 11880359 11880884 11880665.875 11880345 11880937 - gene protein_coding_gene FALSE TRUE AT3G30220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43150.1) -0.065956132801801 -0.768196235899001 0.458718253984333 1 -0.3196706059269 2.60344963411889 -0.065956132801801 0.04681235945186
AT3G42670_at 2.34219641292373 2.39838433494011 2.48531482604962 2.05704626678749 2.20521897502066 2.38292850182497 2.67018880335515 2.45829905306508 1.83223940128887 2.25450062372173 2.36585863172278 2.31167678041064 2.67433612623120 2.08225537102149 2.42376258758091 2.83700678841194 2.58055815101207 2.57650720557418 2.35558167308240 0.194900957572112 0.196728120055462 0.194008976792326 0.201536297911897 0.196283837815144 0.197402833985173 0.204701097400163 0.203008810550615 0.216145136996773 0.196479759794882 0.205455923407362 0.198839286159687 0.197859618179357 0.197283627123203 0.201663762025001 0.196072506823426 0.201561082870876 0.203286045132992 0.196986487548054 3 3 - 14766994 14767452 14767245.455 14766784 14771071 - gene protein_coding_gene FALSE TRUE AT3G42670.1 CHR38 (chromatin remodeling 38); ATP binding / DNA binding / helicase similar to CHR42 (chromatin remodeling 42), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT5G20420.1); similar to SNF2-related; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE84873.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0747073152821568 0.76801709247677 0.458820335983459 1 -0.319802285373486 4.68941503238418 0.0747073152821568 0.0887567971534694
AT3G58280_at 1.01095975866017 1.14181827730408 1.17911941871023 0.767661707831806 0.641538562058777 1.18694435010608 1.14682896640616 0.927662288223697 1.16550210730770 0.908836704941143 1.11492252869825 1.02177769864123 0.596059960279452 1.11261158842903 0.88102992755864 1.26500213007679 0.960225788165968 1.07978434229425 1.11197642420911 0.207399156285949 0.212861436327945 0.218945456346967 0.207697227530634 0.211445675869071 0.206069449589672 0.212954380524454 0.214074901220455 0.217122389525281 0.219854881415972 0.21279568532956 0.213403629084168 0.213623780178246 0.209950440009011 0.212044168980308 0.215392879382939 0.207206129683515 0.216414739968414 0.209992172412434 3 3|0 -|/ 21589602 21590232 21589848.6 21589489 21590744 - gene protein_coding_gene FALSE TRUE AT3G58280.1 similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58290.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.0855898231365858 -0.767935285282652 0.45886695733658 1 -0.319862408701285 2.03333257833126 -0.0855898231365858 0.126214035939309
AT3G20070_at 4.79082928782646 4.98729099544401 4.63456503873225 4.91138921212275 5.98905096542258 5.15668715589336 6.11643296613029 5.83453649703424 4.17671906164515 4.82348394078355 4.98731431150448 5.08919236643534 5.25289840607326 5.21075755320568 4.61115495848162 5.11856497810951 5.09722392396405 4.57477267179060 5.7886925833406 0.205446604382833 0.202778458870327 0.204744893580608 0.200833419131468 0.206293214009645 0.213342051764867 0.216927337716495 0.211048461494126 0.216932456910068 0.207641748794054 0.203110621507394 0.200833419131468 0.205450424011323 0.216487186083784 0.212953871305101 0.201374523686409 0.214088009311961 0.206148869069741 0.200833419131468 3 3|0 -|/ 7004963 7005696 7005220.778 7004678 7006924 - gene protein_coding_gene FALSE TRUE AT3G20070.1|AT3G20070.2 TTN9 (TITAN9) Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information. similar to hypothetical protein MtrDRAFT_AC135416g39v1 [Medicago truncatula] (GB:ABE81966.1) -0.0981231546467725 -0.767690100414656 0.459006704665377 1 -0.320042570595109 10.2637811438851 -0.0981231546467725 0.163032185414508
AT2G37410_at 8.78735833379454 9.02015149850796 8.93667252110827 8.93989547486846 9.51333876154633 9.3259476351915 8.71121733486713 9.01036774036156 8.54086075577397 8.35204124144063 7.97242409855608 8.16352159098337 8.4843061013089 8.38384854928614 8.14864162481269 8.39104145882442 8.28950579476476 8.40126063202705 8.40959480106826 0.148019172259857 0.149209824555577 0.146439655979130 0.144193190818986 0.143361293636208 0.147089417723184 0.142465658900506 0.149113932473410 0.149135182994821 0.140507627369433 0.141780108852483 0.151637963634505 0.143972497459742 0.148769421093489 0.145215821964520 0.144587072873529 0.140064603769280 0.143735194981878 0.146186573697782 2 2 - 15705203 15705735 15705555.182 15704913 15706354 - gene protein_coding_gene FALSE TRUE AT2G37410.1|AT2G37410.2 ATTIM17-2 (Arabidopsis thaliana translocase inner membrane subunit 17-2); protein translocase Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway. Identical to Mitochondrial import inner membrane translocase subunit Tim17 (TIM17) [Arabidopsis Thaliana] (GB:Q9SP35;GB:Q9ZUS5); similar to ATTIM17-1 (Arabidopsis thaliana translocase inner membrane subunit 17-1), protein translocase [Arabidopsis thaliana] (TAIR:AT1G20350.1); similar to unknown [Solanum tuberosum] (GB:ABA81866.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160) 0.0709215015943228 0.767689442268355 0.459007079823842 1 -0.320043054132293 17.3873608279047 0.0709215015943228 0.073177662831469
AT3G02970_at 0.709394712599491 0.374787994480614 0.60500609162953 0.583102700197429 0.944813334592897 0.625673432787274 0.840575550377923 0.376340783726991 0.981055073331948 0.693966870027667 0.789576756259174 0.336885162733055 0.598837270609656 0.599628225196077 0.759730037513189 0.965755850540407 0.412564597261315 0.756192003041724 0.135940346356229 0.232908328836234 0.227660797650735 0.226972168656799 0.227476916213278 0.228108494566316 0.223988315292373 0.230818256200177 0.227577272640303 0.231356306782788 0.233491267563326 0.228891341519787 0.227675193063939 0.231297328690436 0.228701910176099 0.229447588747947 0.23028276737728 0.230987672919457 0.228110391772450 0.226942510697105 3 3 - 669227 670036 669550.545 669110 670548 - gene protein_coding_gene FALSE TRUE AT3G02970.1 phosphate-responsive 1 family protein similar to PHI-1 (PHOSPHATE-INDUCED 1) [Arabidopsis thaliana] (TAIR:AT1G35140.1); similar to phi-1 [Nicotiana tabacum] (GB:BAA33810.1); contains InterPro domain Phosphate-induced protein 1 conserved region; (InterPro:IPR006766) 0.0815581354139524 0.767306453241223 0.459225425638848 1 -0.320324371942917 1.26048699228215 0.0815581354139524 0.113453878677227
AT1G20690_at 1.21583422673643 1.24937600505913 1.10344956616799 1.08544753219333 0.96849446997460 1.07939147276846 0.928035949067703 1.20671389848063 1.52645607640195 0.354555693914358 1.5824912011715 1.04459992200437 1.73968903099259 0.98220616732293 1.35704568084642 1.22229576247153 0.92249744009432 1.67865167874539 1.39472077174144 0.220645096305739 0.230925102403978 0.235314652005417 0.226448577985557 0.227125921422680 0.220892395868193 0.228116575042477 0.221348623531645 0.225883345337534 0.243867015087752 0.218398404494913 0.225476535616646 0.226102831253568 0.222530453728983 0.223269388505876 0.217921510989451 0.230684359896752 0.219129564925486 0.227965652123943 1 1 + 7175219 7175756 7175484.364 7174428 7176367 + gene protein_coding_gene FALSE TRUE AT1G20690.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G20940.1); contains domain SUBFAMILY NOT NAMED (PTHR13711:SF8); contains domain SWI/SNF-RELATED CHROMATIN BINDING PROTEIN (PTHR13711) 0.066739751771834 0.766950113793211 0.459428637965115 1 -0.320586002632902 2.30864061896039 0.066739751771834 0.0523211161670807
AT3G59260_at 1.99782918307325 2.02228947963805 2.17048739518655 2.61615830061782 1.56316190042049 1.90559774154889 1.55657484512833 2.16302815669408 2.38668372327017 2.69237499607696 2.24342724673981 2.37180008873353 2.06934037549251 2.34123520196124 2.35314508472185 1.84666557733807 2.22494793469411 2.31576704485882 2.51616559539136 0.207062544191627 0.202600324688903 0.202600324688903 0.203802501003186 0.206699238560364 0.208866162423424 0.207660426646124 0.202600324688903 0.210809575914553 0.205298083791059 0.202600324688903 0.208201721119953 0.211404922019925 0.204333291847618 0.211541974424393 0.203226224892998 0.210528891931774 0.209780677880243 0.205794912990426 3 0|3 /|+ 21915703 21916047 21915909.1 21914816 21916165 + gene protein_coding_gene FALSE TRUE AT3G59260.1 pirin, putative Identical to Putative pirin-like protein At3g59260 [Arabidopsis Thaliana] (GB:Q9LX45); similar to pirin, putative [Arabidopsis thaliana] (TAIR:AT2G43120.1); similar to PRN (PIRIN), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G59220.1); similar to Putative pirin-like protein At2g43120 (GB:Q9ZW82); contains InterPro domain Pirin, C-terminal; (InterPro:IPR008778); contains InterPro domain Pirin, N-terminal; (InterPro:IPR003829); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313); contains InterPro domain Pirin; (InterPro:IPR012093) -0.0910147253093312 -0.766501440505953 0.45968458802482 1 -0.320915272676707 4.37565712907026 -0.0910147253093312 0.143151753724275
AT1G49430_at 6.10502526256655 6.4554047211522 4.67471006354639 5.48609953944791 8.3546780134744 7.47388655314596 7.42526769599386 7.49247925215855 8.38467723988085 8.16646101230802 9.30343572757542 9.2066068540015 7.91507827383666 8.86364489041627 9.02297914077303 7.02155835478557 6.53222310347288 7.82468829171458 7.67480452823776 0.254871850496791 0.250242726962381 0.257600047351529 0.262204510781984 0.2442814244881 0.252308882234386 0.240802751967891 0.239739856933983 0.253718484274382 0.245502126894671 0.249807704113044 0.247178067942884 0.246613728813394 0.246726367131279 0.239739856933983 0.239739856933983 0.255243597709554 0.239739856933983 0.243270273580846 1 1|0 +|/ 18298457 18298955 18298701.875 18294711 18299493 + gene protein_coding_gene FALSE TRUE AT1G49430.1 LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22526.1); similar to acyl CoA synthetase [Brassica napus] (GB:CAA96523.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.118119060567169 -0.766359813963584 0.459765399208767 1 -0.321019173236506 14.8267394325428 -0.118119060567169 0.216244224509997
AT1G80660_at 0.534675699760276 0.816991003884828 0.542684499959463 1.13462807536292 0.50381436893108 0.4053262292837 0.712975036253772 0.726896187666672 0.397599004288703 0.651911926295654 0.194732599125385 0.312941178176113 0.266645376193162 0.605330516667538 0.592277264665696 0.936547948108908 0.778833475165086 0.494287579686705 0.855514819218712 0.185170338622780 0.179063857126923 0.187087166714568 0.180128592029836 0.180746969784932 0.17849601910914 0.187085344949339 0.184727198460483 0.180853047395146 0.181203082425671 0.189625429066928 0.179994144783463 0.185551865608235 0.179319712376416 0.193264872551083 0.186876214055244 0.180074151772077 0.184169472522453 0.185716812981827 1 1|0 -|/ 30321120 30321926 30321633.333 30321119 30324840 - gene protein_coding_gene FALSE TRUE AT1G80660.1 AHA9 (Arabidopsis H(+)-ATPase 9); hydrogen-exporting ATPase, phosphorylative mechanism Identical to ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9) (AHA9) [Arabidopsis Thaliana] (GB:Q42556;GB:Q9M8N3;GB:Q9SAJ1); similar to AHA6 (ARABIDOPSIS H(+)-ATPASE 6), ATPase [Arabidopsis thaliana] (TAIR:AT2G07560.1); similar to AHA8 (ARABIDOPSIS H(+)-ATPASE 8), ATPase [Arabidopsis thaliana] (TAIR:AT3G42640.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to plasma membrane H+-ATPase [Sesbania rostrata] (GB:BAC77531.1); similar to plasma membrane proton ATPase [Kosteletzkya vir (GB:AAB84202.2); similar to Theoretical protein with similarity to Swiss-Prot Accession Number P19456 plasma membrane ATPase 2 (proton pump) (GB:AAA98916.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.0817901397756057 -0.765698067686178 0.460143107747666 1 -0.321504419442214 1.25110292538347 -0.0817901397756057 0.114790543563668
AT2G45010_at 8.87137012141023 8.97015782046781 8.9763051862679 8.53294574771755 8.44036003054971 8.12716965421479 7.47549535614185 7.57923164641443 8.22292841693373 7.4459064375334 7.13376452134419 7.76882958262496 7.02452003515649 6.96704925070085 7.70425310378578 7.10498032109912 7.06324942903881 7.29391967214275 7.44897273927412 0.194168616019575 0.192603311089348 0.1966425521697 0.203552938250780 0.193232442502777 0.199933390516144 0.188611220430039 0.185394126456217 0.197247486976855 0.199296532580053 0.192712913237769 0.191032545984186 0.197037180648487 0.192468609823088 0.187662566854819 0.192129713429863 0.197770567292533 0.192812609828633 0.188247623611585 2 2|0 +|/ 18575871 18576665 18576275.1 18574985 18576934 + gene protein_coding_gene FALSE TRUE AT2G45010.1|AT2G45010.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51400.1); similar to unknown [Hordeum vulgare subsp. vulgare] (GB:AAS58477.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) -0.076616853257445 -0.764796695600285 0.460657907885455 1 -0.322164778574456 15.8533827474316 -0.076616853257445 0.0971538239662878
AT3G56460_at 8.80422775295658 8.83440480885019 8.68996757694953 8.6522918974217 9.18213672720023 8.39567016311255 8.54641919401541 8.72575210805077 8.3342576251933 8.85544246104715 8.62820824406553 8.40212535900373 8.51039417063449 8.35958748877298 8.35120800848292 8.60677642516234 8.27962809995772 8.49370991474062 8.71718990784372 0.156157705428488 0.146813304226828 0.158861602536814 0.157878442127110 0.147485799147856 0.156702529491185 0.147464694546719 0.146844340973834 0.172169433938131 0.149162458482331 0.157456056899402 0.147898479959156 0.151341901632493 0.161836520027672 0.149234543035262 0.147001535135441 0.159422037971676 0.144057417520413 0.144411253361746 3 0|3 /|- 20944009 20944758 20944288.111 20943770 20945519 - gene protein_coding_gene FALSE TRUE AT3G56460.1 oxidoreductase, zinc-binding dehydrogenase family protein similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT4G21580.1); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Roseovarius nubinhibens ISM] (GB:ZP_00958583.1); similar to Os05g0313500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055166.1); contains InterPro domain Quinone oxidoreductase/zeta-crystallin; (InterPro:IPR002364); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.089679829486376 -0.764645546446775 0.460744269636067 1 -0.322275444993718 17.2736511345099 -0.089679829486376 0.139844879773533
AT2G46920_at 4.89443119439206 5.7049425784826 4.56994328303006 4.48394126226052 5.71705256870692 5.49765740042421 5.39648270443113 4.9367326220272 4.76913681338541 5.72624367160336 5.62060416345258 5.4901651523538 4.75704197005493 5.73918453253372 4.49768230911477 5.47129833627298 5.23455410681328 4.71300008736555 5.17124062326968 0.300577451951262 0.297603142221148 0.307872462359709 0.305714929662322 0.299481173068853 0.306290706202077 0.295995665923048 0.315510170123506 0.325734537974153 0.295995665923048 0.295995665923048 0.298437458912867 0.303188275824821 0.312042140794446 0.300674625926037 0.309584086458417 0.303591907746728 0.312076108751348 0.299742937774284 2 2 - 19285432 19286100 19285664.4 19285056 19288829 - gene protein_coding_gene FALSE TRUE AT2G46920.1|AT2G46920.2 POL (POLTERGEIST); protein phosphatase type 2C Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. similar to PLL1 (POLTERGEIST LIKE 1), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT2G35350.1); similar to protein phosphatase 2C, putative [Medicago truncatula] (GB:ABE88022.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.0988821750343845 -0.764335066165539 0.460921700498104 1 -0.322502707318392 10.3564721358850 -0.0988821750343845 0.166333300236223
AT3G42500_at 1.33293494523547 1.19629648329953 1.63055981818782 1.38053420577319 0.833154974766377 1.33560302891835 0.455188148843708 1.74870148869778 1.26903827717818 1.51786603387034 1.41418179705638 1.29685074220515 1.52448450156571 1.38759268020373 1.72805147938585 1.20805708440828 1.48346795122566 2.09186970837303 1.32313298649375 0.168537017926096 0.170617262409219 0.168537017926096 0.174844266231509 0.178031229135366 0.172302234176074 0.179943530144391 0.173770186644626 0.172410677464962 0.176957904889068 0.179750468423386 0.168537017926096 0.174675713685389 0.174009199361948 0.169361398559054 0.185270429801263 0.179445537711089 0.175318921859522 0.188282878250515 3 0 / Inf -Inf NA 14642275 14642911 - gene protein_coding_gene FALSE FALSE AT3G42500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44860.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.129244900465597 0.763449333786337 0.461428111767244 1 -0.323150585401404 2.68253759949881 0.129244900465597 0.245152786978506
AT1G15900_at 1.47043806203700 1.72781373085678 2.08121768658703 1.73855530162952 1.65494265705636 1.96259319109398 1.55024161123140 1.83665861275088 2.11440963928977 2.58888383698269 2.20732427869840 2.28319430276343 2.52065063064226 1.74681992891971 1.91335221384268 2.57367609331761 2.32233505919152 1.82703123340059 1.98876465606294 0.238019882374193 0.236283295917122 0.236761464131592 0.250764801240606 0.23194883346581 0.235869583537073 0.232625906656506 0.240102499314784 0.242806616643356 0.249545768815418 0.23823102443816 0.231704359862324 0.238342470455691 0.232880285797631 0.238588509918245 0.230851412404982 0.240790470439816 0.239014900130263 0.241616721531036 1 1 + 5464352 5464651 5464509.091 5464350 5464691 + gene protein_coding_gene FALSE TRUE AT1G15900.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45781.1) 0.0783255641789675 0.763175145566509 0.461584948924396 1 -0.323351007599426 3.95529961250978 0.0783255641789675 0.103882293797398
AT3G60680_at 3.55739128116662 3.80918351632143 3.76442437113312 3.91051898163781 3.71631361562101 3.71952824062440 4.08487892300445 4.10404247051591 3.73451198171915 3.56380887306031 3.84447261309693 3.96276331546926 3.18780498663249 4.05144000782897 3.35435944057878 3.88974177398312 3.79289880954301 3.61266532856463 3.90080816505367 0.232563526898683 0.23631160055944 0.234500329097308 0.226288089665264 0.229705891138768 0.244328774913 0.236720522178704 0.230495334999145 0.234204173256037 0.226295655826126 0.227942502702456 0.230148476552879 0.227416038283994 0.243790594189581 0.231230437922043 0.227786208304373 0.235388119442503 0.241089137249572 0.241412601402169 3 3 + 22442150 22442694 22442489.455 22440935 22443017 + gene protein_coding_gene FALSE TRUE AT3G60680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45260.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47396.1); similar to Os10g0508100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065020.1); contains InterPro domain Protein of unknown function DUF641, plant; (InterPro:IPR006943) -0.0661012338234555 -0.763108648838115 0.461622990541302 1 -0.323399604769365 7.55581582053969 -0.0661012338234555 0.0504894330194423
AT1G47660_at 0.245544724970695 0.500664080441152 -0.0466273877564285 0.51090062690766 -0.0789212640668255 0.273534469992032 0.538462306020344 0.155103185492872 -0.239574564498545 -0.283963872547491 0.658798563171918 0.208748211575561 0.379128618062046 0.246783717540127 0.482711704029149 0.657798932422722 -0.0252409598489786 0.0122590671871626 0.385450599610571 0.21535995462008 0.203778648737133 0.212500857685768 0.208619345420276 0.203778648737133 0.210237336668818 0.203778648737133 0.203778648737133 0.215290535396308 0.221642948093497 0.212333224856317 0.21217746470016 0.203778648737133 0.204977222785495 0.217398052596819 0.211018117360686 0.217660875164000 0.208228150995976 0.207087374472645 1 0|1 /|- 17536408 17537490 17536725.7 17536381 17537991 - gene protein_coding_gene FALSE TRUE AT1G47660.1 similar to AGP19/ATAGP19 (ARABINOGALACTAN-PROTEIN 19) [Arabidopsis thaliana] (TAIR:AT1G68725.1); similar to intestinal mucin [Mamestra configurata] (GB:AAL17912.1) 0.0892153989752312 0.762490310812592 0.46197682672244 1 -0.323851318240610 0.403129694061342 0.0892153989752312 0.139210901836264
AT3G46730_at 0.582313966871044 0.158619450955598 -0.186800050376250 0.0401637266872885 0.170229898594023 0.753345260959081 0.0576049410187527 0.355775863467798 0.301100443150654 0.247227313657707 -0.00214640849864427 -0.141592271516748 -0.0777672901047626 0.358733775127592 0.438553469456025 -0.0374735919116448 0.665192290345774 0.0262453224055767 0.167725184544102 0.185121867658021 0.184279455607577 0.188758264044264 0.190158456133723 0.187382896679967 0.193449170441796 0.19319820509189 0.185899977539174 0.197289105630771 0.190885253654234 0.190505395422824 0.193197749465159 0.183896207731496 0.183607768612071 0.190594482146632 0.188450339051623 0.187106817115049 0.191117417769554 0.186694965334230 3 3 - 17224054 17224578 17224304.909 17224054 17226597 - gene protein_coding_gene FALSE TRUE AT3G46730.1 disease resistance protein (CC-NBS class), putative Identical to Putative disease resistance RPP13-like protein 3 (RPP13L3) [Arabidopsis Thaliana] (GB:Q9STE7); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G46710.1); similar to RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13), ATP binding [Arabidopsis thaliana] (TAIR:AT3G46530.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.0896549992417605 -0.762319938329683 0.46207435063462 1 -0.323975722853079 0.437607870120692 -0.0896549992417605 0.140585909131253
AT3G03450_at 1.44797805961214 1.16888782740506 1.85154360763598 1.58810372367763 1.5060828693184 1.68345876389371 2.16040852136462 1.87622783441791 2.50876437804582 1.84206137505353 2.49701693096422 2.53431395050716 1.71870298184864 2.5466241078318 2.93998892234089 2.56646099450007 2.06326561554626 2.27015285147766 2.36317593890865 0.23353880940899 0.234041519563746 0.236183563867275 0.231834567384684 0.234298909058355 0.247838431917851 0.237375919786158 0.237067948350529 0.240143980879568 0.231834567384684 0.231834567384684 0.235148870189181 0.235160701871077 0.231834567384684 0.237686970300139 0.239563919347098 0.231834567384684 0.234481419974718 0.236437261081383 3 3 - 819651 820153 819887.727 819344 821413 - gene protein_coding_gene FALSE TRUE AT3G03450.1 RGL2 (RGA-LIKE 2); transcription factor Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. Identical to DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like protein 19) (RGL2) [Arabidopsis Thaliana] (GB:Q8GXW1;GB:Q9SRP9); similar to RGL3 (RGA-LIKE 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G17490.1); similar to DELLA protein [Malus x domestica] (GB:AAY56750.1); similar to DELLA protein [Malus x domestica] (GB:AAY56749.1); similar to GIA/RGA-like (GB:AAY28970.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.0739934554029576 0.762248065523665 0.462115495706915 1 -0.32402819636827 3.97536958010556 0.0739934554029576 0.0881581972239717
AT1G49245_at 3.56655573514306 3.70799135769094 3.38671131731768 3.59393426653189 3.81847604318769 3.64460422493465 3.77596040827307 3.82813388970963 3.64650678560735 3.70907748338175 3.48446129917671 3.54731683530415 4.00455195901982 3.74649212453041 3.33508596290901 3.97799061570159 3.55035278320472 4.06157047573424 3.85789957410528 0.191677762637979 0.184337335835811 0.180717950347934 0.184923616892931 0.180733514669434 0.190042622438441 0.182437173051257 0.183339155472616 0.193656858218144 0.192534218576577 0.183426933959085 0.180717950347934 0.182297488713265 0.190576877229956 0.186662143677407 0.184271646458456 0.194792394858394 0.182872150373590 0.188665838400933 1 1 + 18222531 18222726 18222639 18222418 18222925 + gene protein_coding_gene FALSE TRUE AT1G49245.1 contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.0665395377308714 -0.762165643313735 0.462162682879572 1 -0.324088366457035 7.39094875767143 -0.0665395377308714 0.0535907761462401
AT2G03370_at 1.56667489816613 1.6035847513487 2.02726583786718 1.97384742404811 1.37701031706233 1.8445151526896 1.44257137585168 1.62108481799132 2.23127283169166 1.73370471069221 2.01739543617174 1.68875448956028 1.9284081008973 1.66059347388489 1.72392498086589 1.74956416375799 2.29041046884300 1.87504072376852 1.93427258605041 0.208820169353966 0.211483312228822 0.212474166078422 0.207524298677629 0.211268721336342 0.21412982510172 0.216204406837981 0.209507783624065 0.230094257208874 0.207721360738111 0.208983850310355 0.212747353992575 0.213599001488665 0.210494186451628 0.214177311118668 0.207135691373288 0.207178663166057 0.209798577874756 0.206899250367112 2 2 - 1024956 1025259 1025090.455 1024707 1027042 - gene protein_coding_gene FALSE TRUE AT2G03370.1 serine carboxypeptidase similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G03360.1); similar to Os01g0498300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043125.1); similar to glycosyltransferase [Saccharum officinarum] (GB:CAI30073.1); similar to glycosyltransferase [Sorghum bicolor] (GB:CAI30072.1); contains InterPro domain Peptidase S13, D-Ala-D-Ala carboxypeptidase C; (InterPro:IPR000667); contains InterPro domain Protein of unknown function DUF563; (InterPro:IPR007657) 0.0737627461589803 0.762041985221247 0.462233483587100 1 -0.324178628805512 3.59865841647653 0.0737627461589803 0.0873272457185371
AT2G35060_at 9.27062573808498 9.4474759800643 9.62214338265788 9.66797531320807 9.8810884788988 9.71185903810415 9.4424160451648 9.4930356387339 9.49603307180907 9.38362370053823 9.39532939846548 8.89603526820727 9.44015681577551 9.30148143635639 8.5225582440897 8.82382177698104 9.28539939691783 9.0609036397459 8.9245828656213 0.122426867601968 0.11833249561488 0.121576362187057 0.119471147956835 0.119454117392698 0.122971765074337 0.121758952258752 0.124191446321145 0.130266595685811 0.124880412278208 0.125121005173420 0.122459386638278 0.125246152099940 0.123273541258728 0.122988561024326 0.125257553801380 0.119982406540350 0.119731291362508 0.11840764119121 2 2|0 -|/ 14782429 14782911 14782653.4 14782142 14785949 - gene protein_coding_gene FALSE TRUE AT2G35060.1|AT2G35060.2 KUP11 (K+ uptake permease 11); potassium ion transporter potassium transporter Identical to Potassium transporter 11 (AtPOT11) (POT11) [Arabidopsis Thaliana] (GB:O64769); similar to potassium ion transporter [Arabidopsis thaliana] (TAIR:AT4G19960.1); similar to KUP10 (K+ transporter 10), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G31120.1); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to Putative potassium transporter 12 (OsHAK12) (GB:Q8VXB1); similar to putative potasium transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD21001.1); similar to Putative potassium transporter 9 (AtPOT9) (GB:O49423); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.0650045352248791 0.762019997474701 0.462246073443028 1 -0.324194677061104 18.7464727650597 0.0650045352248791 0.0439768372257802
AT1G44935_at 2.40051520049780 2.14467221970108 2.76090386222972 2.75096520556936 2.44740261027444 2.50481746577242 2.78791668588134 2.85321028632556 2.99024366070722 2.67025608061103 2.35977204745513 2.29341453610151 2.99019638033238 2.94310149705555 2.22392390510104 2.44903870279824 2.44727921192281 3.04063222384944 2.72045682829729 0.259381693223380 0.267447123474795 0.258758810194193 0.267753569932121 0.258758810194193 0.258758810194193 0.265410622920457 0.27369471621366 0.269963670614814 0.264148414395228 0.277767254359631 0.263282184922665 0.26069818486209 0.262565735855122 0.258758810194193 0.258758810194193 0.266196136051693 0.269321780951731 0.258758810194193 1 1 + 16987564 16988079 16987799.25 16987442 16988292 + gene other_RNA FALSE TRUE AT1G44935.1 SADHU9-1 (SADHU NON-CODING RETROTRANSPOSON); other RNA Member of Sadhu non-coding retrotransposon family -0.0653943444673987 -0.761686872156919 0.462436842785588 1 -0.324437765652579 5.27483644350589 -0.0653943444673987 0.0467933307301342
AT4G14465_at 2.04829145175415 1.46208319770423 1.46837592054888 1.29940498206232 1.56695794067231 1.35000905459341 1.39732894453754 1.63371321403378 1.86950428722425 1.86374559346869 1.80745837737835 1.81948474075556 1.60814561059038 1.92837435621363 1.93627687180280 2.16833824397941 1.89426442385014 2.18243587007517 1.87490356773682 0.208118162535522 0.202418382949753 0.194162003111079 0.207205271830015 0.196263726507338 0.199501120467200 0.204634584338873 0.200757281818358 0.199939002192546 0.201440630335388 0.200507834723129 0.201643552452741 0.199555934333384 0.213097743242789 0.208950552199551 0.200905278492772 0.215609246165046 0.210505083297773 0.206975826964628 4 4 + 8321251 8321783 8321521.545 8320626 8322197 + gene protein_coding_gene FALSE TRUE AT4G14465.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G04570.1); similar to hypothetical protein 40.t00056 [Brassica oleracea] (GB:ABD65169.1); similar to Os08g0563200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062524.1); similar to Os02g0820800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048546.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) -0.0827271992587195 -0.761664953718082 0.462449396476776 1 -0.324453756680236 3.42201148555863 -0.0827271992587195 0.119286723772563
AT2G17410_at 5.50058502849988 5.74117715801407 5.68364420083574 5.616631441759 6.02195027731289 5.87102724669679 5.99487749725236 6.00182080458167 4.98941978466922 4.98485558968046 5.21343302608117 5.07156983691142 5.26484607365938 5.0822900023121 5.16058202349912 5.03312115724619 5.36659736335344 5.06810849745362 5.06872828834203 0.137168156819666 0.136370708945910 0.140635778330809 0.136553130118034 0.139640495580424 0.138286074639135 0.140777415584117 0.144859507147346 0.140105362520100 0.139749024294994 0.137855912463664 0.137661010931922 0.141944342387847 0.141380061387536 0.136665444242114 0.137276286671747 0.141370893288739 0.144862917622030 0.137622784390712 2 2|0 +|/ 7568069 7570524 7569155.952 7566080 7570834 + gene protein_coding_gene FALSE TRUE AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76510.2); similar to AT-rich interaction re (GB:ABE82605.1); similar to Os06g0622300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058097.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.0659660564490481 0.761502997721612 0.462542162807747 1 -0.324571902150316 10.8899157327666 0.0659660564490481 0.0505133649169149
AT2G41830_at 3.60431568137969 3.06366970475187 2.75810816615170 3.01505558228733 3.00118453524342 2.79185070649304 2.61571629813838 3.16413874054999 3.71730936070756 3.0716966427383 4.29509752526227 3.68648623413967 3.35678626893342 3.99408024619933 3.99568247846581 3.4865028027225 2.99105358803945 3.78828556800056 3.10114128215095 0.222486225889848 0.222486225889848 0.222486225889848 0.231839673441544 0.224878205760416 0.222486225889848 0.224344719787625 0.226738201056585 0.231817594591168 0.231864195738087 0.222486225889848 0.223857230861730 0.225060806552164 0.225494391375732 0.222486225889848 0.22704107946559 0.228968484681266 0.227986648028482 0.228317796102442 2 2|0 -|/ 17457514 17458178 17457863.2 17457187 17464165 - gene protein_coding_gene FALSE TRUE AT2G41830.1 cyclin-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21080.1); similar to binding [Arabidopsis thaliana] (TAIR:AT1G05960.1); similar to At1g05960/T21E18_20 [Medicago truncatula] (GB:ABE90589.1); similar to Os02g0143200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045867.1); similar to hypothetical protein MtrDRAFT_AC136506g30v1 [Medicago truncatula] (GB:ABE82339.1); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367) 0.091060359221831 0.761365345049541 0.462621017828962 1 -0.324672300958255 6.49973622729242 0.091060359221831 0.145088340096578
AT4G33500_at 9.17026178526741 9.20471151478901 9.23255627453027 9.06575591341742 9.68788034649174 9.00842060346673 9.4900291641546 9.21312331288644 9.37315602206658 9.32323632828112 9.58604855502068 9.52594117285394 9.34584913061518 9.62789538685308 9.34835712061563 9.80914236995384 9.3763250231572 9.405748369837 9.2334918587589 0.137633867918789 0.132813673767321 0.154480487122864 0.145928807645782 0.136642125760149 0.165763507491446 0.14007178369729 0.139406856617286 0.147232634386210 0.143397744512909 0.133373805309177 0.132505286096986 0.137118291830176 0.134047227592987 0.142144063842868 0.131330741167140 0.145590785049591 0.141463871767593 0.136939105122283 4 4 - 16112859 16113722 16113381.364 16112661 16116351 - gene protein_coding_gene FALSE TRUE AT4G33500.1 protein phosphatase 2C-related / PP2C-related similar to catalytic [Arabidopsis thaliana] (TAIR:AT4G16580.1); similar to Os03g0192500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049240.1); similar to Protein phosphatase 2C containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94415.1); similar to Protein phosphatase 2C containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94416.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.086161914139979 0.761210090382062 0.462709966522521 1 -0.324785518606236 18.6656547614499 0.086161914139979 0.130349516901524
AT1G47300_at 1.06778101544197 0.409312180898132 0.658664057883944 1.08478007563439 0.618456404417357 0.70502517892514 0.738042465125395 0.831088663024534 0.91382510952099 1.30793279846046 0.630883212443874 1.05199047334859 0.471824382619547 1.07986906870933 0.555601734037127 0.358350014510927 1.13024156704100 0.496843910319919 0.490149371318261 0.193302206609402 0.193250264805963 0.195109004847177 0.197184484502905 0.194292653479618 0.193333518446045 0.192451702210050 0.194051458183118 0.198682294613905 0.192451702210050 0.192451702210050 0.196453035610792 0.192954150380917 0.193363251788073 0.193772158601767 0.193793944847880 0.197563451889593 0.210457111841417 0.198068632867443 1 1 - 17342004 17343061 17342442.182 17342001 17343412 - gene protein_coding_gene FALSE TRUE AT1G47300.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47340.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.0884215998142075 -0.760554629929192 0.463085613850223 1 -0.325263278626862 1.57710357440821 -0.0884215998142075 0.137500377505081
AT1G07700_at 10.5184320005175 10.5577030826064 11.0037841079923 10.8610449531044 10.7554985205445 10.6934564637896 11.4210738118064 11.2047760584994 10.9702253405024 10.9502808453821 11.0277317175422 10.7217282325077 10.7250707505294 10.8859369215789 10.7661255756683 11.0431716597857 10.8980041498845 10.9789559407075 10.8224018090585 0.0661517510181709 0.0655081070866092 0.0674634208192205 0.066632391493163 0.0669624669492124 0.0670698222291693 0.0655081070866092 0.0684312895506277 0.0713121082845337 0.0657134197340348 0.0656701793872218 0.0663620187037 0.0675994676796684 0.0662005985530787 0.068103540663639 0.0655081070866092 0.0681035569139867 0.0709458333823972 0.0665463250812421 1 1|0 +|/ 2380364 2381080 2380612.3 2379644 2381359 + gene protein_coding_gene FALSE TRUE AT1G07700.1|AT1G07700.2|AT1G07700.3 thioredoxin family protein similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to thioredoxin 1 [Melopsittacus undulatus] (GB:AAO72714.1); similar to Os02g0567100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047177.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335)|similar to Os02g0567100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047177.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766)|similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to thioredoxin 1 [Melopsittacus undulatus] (GB:AAO72714.1); similar to Os02g0567100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047177.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766) -0.0652561367276001 -0.760397141534525 0.463175900094617 1 -0.325378016030721 21.7745427666108 -0.0652561367276001 0.0466126581035414
AT1G78040_at 11.9290518306330 12.1750764003089 11.4321662656949 11.5150622596444 11.8748558247650 11.7595491447585 12.1263595141959 12.4914368277122 12.4356376400677 12.3227556850760 13.0380013208174 13.0588595202351 12.7994125100837 12.7496088125817 12.9762730851091 12.5656017727539 12.1745234000206 12.8504511102819 12.3969501883203 0.0813496887972274 0.0786478511269034 0.0826322215692159 0.0824510211612998 0.08095007911081 0.0886374543605124 0.0818697706499222 0.0786478511269034 0.0879664090627811 0.0831606335299187 0.0821597262856087 0.0800303002648313 0.0801949908107221 0.0821589249224061 0.0820791481574104 0.0786478511269034 0.0894012440025173 0.083262163630022 0.0832230508233691 1 1|0 +|/ 29350923 29351655 29351385.9 29350732 29352001 + gene protein_coding_gene FALSE TRUE AT1G78040.1|AT1G78040.2 pollen Ole e 1 allergen and extensin family protein similar to SAH7 [Arabidopsis thaliana] (TAIR:AT4G08685.1); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:ABC86745.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.0717979162497047 -0.760126310049603 0.463331190815793 1 -0.325575279457820 24.4937977314508 -0.0717979162497047 0.0800510004255788
AT1G24510_at 9.50378667582288 9.51338112608927 9.31249424537846 9.34304147622828 9.56464848205 9.0366083341193 9.47868429120392 9.2741244853609 8.81663210984253 9.09358859711991 9.16115681359906 9.3260850085682 9.08117537277564 8.93221654462284 9.21595384097626 9.07266247054146 8.71294853673565 8.47436787603879 9.15461907396298 0.115320629264851 0.115577111168938 0.117196808335490 0.113729556266022 0.113964644429336 0.117636853130498 0.117814228763808 0.112085878837285 0.121187719751275 0.114942989054603 0.113055443748007 0.112085878837285 0.118812066893535 0.116030643021789 0.115783499341245 0.115572432847825 0.119671603300309 0.135390456501967 0.112085878837285 1 1|0 -|/ 8685497 8686508 8685943.6 8685294 8688235 - gene protein_coding_gene FALSE TRUE AT1G24510.1|AT1G24510.2 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) (GB:P54411); similar to T complex protein (GB:2206327A); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) (GB:P40412); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, epsilon subunit; (InterPro:IPR012718)|Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) (GB:P54411); similar to T complex protein (GB:2206327A); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) (GB:P40412); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain T-complex protein 1, epsilon subunit; (InterPro:IPR012718) -0.0764192312507304 -0.760110489374241 0.463340263179174 1 -0.325586800703754 18.387688173677 -0.0764192312507304 0.0981536242218804
AT4G23760_at 2.29193353251986 2.04907914594451 2.25114782490285 1.99844931564791 1.68876548883751 2.27496752850307 1.75511406208587 1.61785338363761 1.93254620514056 1.69331735615516 1.46255148596207 1.42757203866352 2.04224144044588 1.51729739367554 1.41110866927592 1.33277212269946 2.03963619009804 1.28274803255150 1.93965782806417 0.249531139730569 0.248718889714918 0.239942173485814 0.247286367111442 0.23801796021642 0.242515706775058 0.23801796021642 0.240322926725751 0.242085768239009 0.241717332776976 0.239750039147351 0.23898610055603 0.240291771161120 0.239290819995910 0.239634757990420 0.241892440330523 0.244650485744697 0.250999945665009 0.243008204494699 4 4|0 +|/ 12379409 12382083 12380836.5 12379384 12383044 + gene protein_coding_gene FALSE TRUE AT4G23760.1 unknown protein -0.0829226831779674 -0.759866516406628 0.463480183755081 1 -0.325764444467441 3.70074614432229 -0.0829226831779674 0.120556903494274
AT4G20230_at 1.65440186510655 1.50526980325148 1.96448857453874 2.19668770647857 1.16334706879764 1.40474296061496 1.59643219491478 2.03577049168936 1.69573287483993 2.37953933245936 2.24047669152380 2.47216777242805 1.93957507937966 2.12586207224781 2.03307922108264 2.03736831289743 1.47498942180754 2.50798017022274 2.64934915464399 0.206314259411304 0.19194512716812 0.201178608811929 0.206133406047115 0.193312050695992 0.200876052219466 0.194040539770485 0.215941011413647 0.204430254637227 0.192857981786793 0.200592807372535 0.192503880416073 0.208397314149997 0.203735321299633 0.197192126805657 0.19194512716812 0.198391540163244 0.194003573606066 0.206987514072313 4 0|4 /|- 10924267 10924825 10924523.3 10924131 10926768 - gene protein_coding_gene FALSE TRUE AT4G20230.1 terpene synthase/cyclase family protein similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20210.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT4G20200.1); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G66020.1); similar to Casbene synthase, chloroplast precursor (GB:P59287); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) -0.0766275612077248 -0.759806856849355 0.4635144031127 1 -0.325807876577528 3.86288148151391 -0.0766275612077248 0.0990270326883773
AT1G22920_at 7.90958494142402 8.07555995327084 7.80173704203553 7.9251508959221 7.59376621371184 7.7321089764336 7.4083466785956 7.56335406253694 6.95597903003533 7.14586149081265 6.87783037476552 7.52232180785767 6.89503255052606 7.29937835853101 7.3191534297781 7.49659517698462 6.84850028922181 7.05160149710771 7.06642345862472 0.200782416086095 0.189036415583076 0.193968912588562 0.189995249240632 0.188649511432601 0.198324473884760 0.195145856898115 0.195271209502188 0.211267522382880 0.190281235112236 0.194265250926642 0.191062993855339 0.213082598879858 0.194480387510255 0.195632089996260 0.194083675357446 0.206277724104636 0.199708042825222 0.189766846445209 1 1 - 8109873 8111118 8110521 8109703 8112040 - gene protein_coding_gene FALSE TRUE AT1G22920.1|AT1G22920.2 AJH1 (COP9-signalosome 5A) AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. Identical to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1) (CSN5B) [Arabidopsis Thaliana] (GB:Q8LAZ7;GB:O23130;GB:O82524;GB:Q84WE7); similar to AJH2 (COP9-signalosome 5B), protein binding [Arabidopsis thaliana] (TAIR:AT1G71230.1); similar to Mov34-1; Invasin/intimin cell-adhesion [Medicago truncatula] (GB:ABE80408.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964)|Identical to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1) (CSN5B) [Arabidopsis Thaliana] (GB:Q8LAZ7;GB:O23130;GB:O82524;GB:Q84WE7); similar to AJH2 (COP9-signalosome 5B), protein binding [Arabidopsis thaliana] (TAIR:AT1G71230.1); similar to putative JUN kinase activation domain binding protein [Medicago sativa] (GB:AAC26484.1); similar to Mov34-1; Invasin/intimin cell-adhesion [Medicago truncatula] (GB:ABE80408.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964) 0.0658465327539568 0.759709042845132 0.463570510468764 1 -0.325879078515648 14.8611459348684 0.0658465327539568 0.0507332682052289
AT4G26500_at 6.46156131087144 6.89618857720824 6.45841905854952 6.78104636668757 6.29950421747336 6.25721712124223 7.43239924572678 7.48328024820762 5.66944167647414 6.64940805733282 6.33746481731728 6.59525569302574 6.31633740869518 6.7023662993088 6.8539093691617 6.60984795792624 6.59294081783263 6.85431113824185 6.09860761573886 0.189147759278814 0.181028249632320 0.190058189586462 0.193870137679225 0.180342031444006 0.198208818906370 0.186223337903532 0.185166620129317 0.196804245870956 0.190512557074769 0.180865325684344 0.184447304990645 0.185264461155709 0.186536798227724 0.192184822225437 0.182906075120606 0.190447934940933 0.184524744446518 0.191554822743020 4 4 - 13382467 13383017 13382735.091 13382206 13383649 - gene protein_coding_gene FALSE TRUE AT4G26500.1 ATSUFE/CPSUFE/EMB1374 (EMBRYO DEFECTIVE 1374); enzyme activator/ transcription regulator Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis. Identical to SufE-like protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q84W65;GB:O65584); similar to BolA-like family protein [Arabidopsis thaliana] (TAIR:AT1G55805.1); similar to Os09g0270900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062734.1); similar to hypothetical protein slr1419 [Synechocystis sp. PCC 6803] (GB:NP_442816.1); contains InterPro domain BolA-like protein; (InterPro:IPR002634); contains InterPro domain Fe-S metabolism associated SufE; (InterPro:IPR003808) -0.0753294583376376 -0.759400509358236 0.463747517523955 1 -0.326103616344310 13.1321803370145 -0.0753294583376376 0.0943689654319378
AT2G32740_at 1.14867287303079 0.760065323095752 0.953011547287215 0.86941597833605 0.554139059929842 0.98343467114633 0.924189986923901 0.89566627876727 1.11570153963243 0.612581019733857 0.71650452313827 0.773749655499362 1.30860478902462 0.832507439987069 0.555790784126168 0.508674519742434 0.775499161854316 0.682374878605842 0.766293050887687 0.180142823079371 0.17874563848723 0.177311764639584 0.175331280980076 0.179482033721124 0.176462585220188 0.181192913062101 0.188196518971825 0.187674330878426 0.186373280186079 0.182556273702548 0.186762707637163 0.189611891923539 0.178727264542359 0.189726710562069 0.178790411561063 0.179977150310763 0.181525252428904 0.182813585689802 2 2 + 13894748 13895259 13894939.091 13893903 13895309 + gene protein_coding_gene FALSE TRUE AT2G32740.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT2G32750.1); similar to Os03g0144800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048945.1); similar to Xyloglucan galactosyltransferase KATAMARI1 homolog (GB:Q8H038); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.0772301428501496 -0.759370795415559 0.463764566817739 1 -0.326125236621545 1.68644367602227 -0.0772301428501496 0.101368144338195
AT1G69680_at 4.69673647784676 4.9086666621566 5.39816889537345 5.37911358012776 4.86845009968651 4.9178268367979 5.78609245633784 5.67868786368703 4.27698049232791 4.82117876762276 4.59636639591169 4.34915193617042 4.79423942007589 4.0809375507048 4.60787798038822 4.89451559213403 5.04267490908388 4.70391770670525 4.81003222879689 0.213551888530162 0.211868283047475 0.215201775159658 0.217261422735914 0.211171548315790 0.224989144914253 0.217072442646183 0.217253409640354 0.222298598545274 0.213185271927639 0.213387559398823 0.216440212817914 0.2145874658423 0.214233827313967 0.211171548315790 0.211171548315790 0.222675125535749 0.219165085133329 0.215556553110304 1 1 + 26208825 26210202 26209522.818 26208468 26210591 + gene protein_coding_gene FALSE TRUE AT1G69680.1 similar to mog1 protein [Xenopus laevis] (GB:CAC35704.1); similar to Os04g0459600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052985.1); contains InterPro domain Ran-interacting Mog1 protein; (InterPro:IPR007681) -0.0645048275981965 -0.75922717493872 0.463846979132855 1 -0.326229726239552 9.83910486699137 -0.0645048275981965 0.0421242625626637
AT1G10700_at 7.25931951625308 7.73007150892299 7.35915068610391 7.00869727512688 7.34907920071568 7.02540069862368 7.10320279327543 6.70036527746176 6.53349115410147 6.23943080964816 6.61589073741807 6.95549206559253 5.72749136688384 6.31880189615324 6.5351682819552 6.12811705475322 6.1991431578707 6.27811463645173 5.69820515500748 0.214385075443055 0.224659975629257 0.224725654265421 0.218602998371985 0.217015463262402 0.225113836145868 0.217226201813266 0.225594571468902 0.236757007395066 0.212165778317992 0.219953173116589 0.214256631834926 0.221877604108716 0.21744332755757 0.223645948454913 0.21650130771473 0.236259551435968 0.228402143886722 0.213558326891253 1 1|0 +|/ 3555066 3556249 3555621.8 3554105 3556504 + gene protein_coding_gene FALSE TRUE AT1G10700.1 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) Identical to Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3) (PRS3) [Arabidopsis Thaliana] (GB:Q93Z66;GB:Q9SAD2;GB:Q9SGY0;GB:Q9XFR3); similar to ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) [Arabidopsis thaliana] (TAIR:AT2G42910.1); similar to Ribose-phosphate pyrophosphokinase 3, mitochondrial precursor (Phosphoribosyl pyrophosphate synthetase 3) (GB:Q9XGA0); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) 0.0875386089400043 0.759117278451128 0.463910046239008 1 -0.326309668409351 13.4428207558374 0.0875386089400043 0.135322868063263
AT3G57790_at 8.34747350471807 8.50661742541464 8.5338074860354 8.63207215374144 9.20719830020623 8.5714588390609 8.56233497348397 8.40725569420939 8.7688354373268 8.51742433915791 8.85773136925548 8.60592495137995 8.64755445160898 8.6106597843809 8.38763077265253 8.59712103453897 8.13833251476523 8.59314681861258 8.72675167002029 0.145990099234831 0.142765865685251 0.146230813835980 0.149160414423625 0.140812144975566 0.147325040503579 0.142185730835769 0.145053346963033 0.153956754214282 0.140767114998122 0.140767114998122 0.142969399799042 0.140767114998122 0.148077459401145 0.148328125852229 0.142842102024300 0.158348831565255 0.162429777839790 0.143406787086044 3 3 - 21416417 21416999 21416633.545 21416364 21418601 - gene protein_coding_gene FALSE TRUE AT3G57790.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Parallel beta-helix repeat [Medicago truncatula] (GB:ABE94662.1); similar to Os09g0487600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063526.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.081986345976073 0.759084430889707 0.463928897769975 1 -0.326333560757883 17.2089105609342 0.081986345976073 0.117778540020505
AT2G29790_at 0.932712017323936 0.939186562410106 1.14377897936827 1.31502344599168 1.28567355144605 1.02571979012384 1.28510852113548 1.06320852458903 1.64667104206614 1.18084699425105 1.20185886342130 1.06881915207714 1.09521341356199 0.907082388589492 1.44258237706922 1.17910261885677 1.59427835267201 1.26456780165953 1.65432550482489 0.180193612826233 0.181426450103510 0.181923966554067 0.172868728992796 0.175734464998431 0.178472080152435 0.178725601886735 0.178278786247539 0.181612870140217 0.181399940899844 0.172868728992796 0.187257204145060 0.18521584269549 0.182338935636544 0.174582369727227 0.18012802057843 0.184794987445384 0.183141997914791 0.191365930782638 2 2|0 -|/ 12728066 12729477 12728918.571 12727961 12729532 - gene protein_coding_gene FALSE TRUE AT2G29790.1 Encodes a Maternally expressed gene (MEG) family protein [pseudogene] -0.0686323453455517 -0.759055402286553 0.463945557969842 1 -0.326354674541256 2.48036940806645 -0.0686323453455517 0.0661653304491893
AT1G26790_at 0.863035640224168 0.373518103507857 0.636967590282504 0.755650309298827 0.581333213238238 0.722514345833526 0.814747960669019 0.713006149326826 1.26971062090074 0.909703088199065 0.93566268992584 0.66805435330704 0.95206694196772 0.909151968511295 1.18577448703306 0.966380140911794 0.943214524552134 0.880546114463877 1.00827400320198 0.200164955284616 0.201431752924485 0.200903349227559 0.199971552335535 0.201886465758082 0.196620045867796 0.207770241301799 0.199562384645140 0.204805837434008 0.203606631493718 0.196758111173301 0.202124848016037 0.204835263658995 0.196620045867796 0.201989583353558 0.196620045867796 0.201220628039128 0.197632012494611 0.205129002474224 1 1 - 9273884 9274419 9274180.909 9273844 9275299 - gene protein_coding_gene FALSE TRUE AT1G26790.1 Dof-type zinc finger domain-containing protein Identical to Hypothetical Dof zinc finger protein DOF1.3 (AtDOF1.3) (DOF1.3) [Arabidopsis Thaliana] (GB:Q9LQX4); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G69570.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE80437.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.0747083834759290 -0.758836352295071 0.464071288199705 1 -0.326513976042771 1.67893115072330 -0.0747083834759290 0.0922231205420177
AT2G27050_at 9.79702275948256 9.70378429039448 9.23326618732803 9.30505735759353 10.1310615514078 9.91476129888917 9.67595534804112 9.62603560582058 10.4128822840835 10.2265857429216 10.5656961934489 10.4644564852958 10.2615183760621 10.1851978075505 10.2727079639871 10.2717588834487 9.98026507655857 10.2123550168775 10.4145406500182 0.0761606936897394 0.072711103118062 0.075598230795692 0.0735450908991209 0.0731668516147444 0.0814582592544579 0.0752945080278134 0.0741905965586256 0.0759725286400876 0.0721748923763828 0.0732600964137006 0.0721748923763828 0.0763277684093322 0.076318442051868 0.0743891567127667 0.0732841495707587 0.0769867383623018 0.0745251893682315 0.0721748923763828 2 2 + 11554584 11555021 11554793.909 11552831 11555371 + gene protein_coding_gene FALSE TRUE AT2G27050.1 EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor ethylene-insensitive3-like1 (EIL1) Identical to ETHYLENE-INSENSITIVE3-like 1 protein (EIL1) [Arabidopsis Thaliana] (GB:Q9SLH0;GB:O23114); similar to EIN3 (ETHYLENE-INSENSITIVE3), transcription factor [Arabidopsis thaliana] (TAIR:AT3G20770.1); similar to EIN3-like protein [Cucumis melo] (GB:BAB64344.1); similar to Ethylene insensitive 3 [Medicago truncatula] (GB:ABE82621.1); similar to transcription factor EIL1 [Vigna radiata] (GB:AAL76272.1) -0.0646273262004158 -0.758431814456492 0.464303541647970 1 -0.326808063580222 19.9874084004087 -0.0646273262004158 0.0434795027053329
AT1G61490_at 2.26529645453728 1.82984659737780 2.23799775406400 2.47680871500036 1.78709417238567 1.78078798460755 1.56637933928784 1.64248219202378 2.55446170445898 2.12596362554711 1.83187265539851 1.75556211793385 1.78861636944411 2.07681980033274 1.93404937691016 1.73661230212169 1.77649157486994 1.91490346626585 2.04909174200998 0.190799065774145 0.194095045660481 0.188096786341246 0.193289712789306 0.191071360515033 0.184329769500207 0.186041375829582 0.186542308101142 0.193564966394178 0.189599237060916 0.184329769500207 0.185212262071377 0.190416617697329 0.192888180176091 0.188864872475952 0.187049893568749 0.190262415582397 0.186402253717061 0.192409941969483 1 1 - 22688848 22689495 22689062.818 22688819 22691932 - gene protein_coding_gene FALSE TRUE AT1G61490.1 S-locus protein kinase, putative similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61440.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G61420.1); similar to Os07g0551300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059942.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0733176943606804 -0.758409429690335 0.464316395358331 1 -0.326824332586465 3.99585580878468 -0.0733176943606804 0.0869552185345098
AT3G54290_at 5.28300304837357 6.22860720974606 6.1530233081787 6.34059209470893 7.26825086452567 6.20146400851601 7.02169107718493 6.68272374180207 5.71684436513045 6.35193424089391 6.25640806576338 6.2380488317933 6.06819099840886 6.08781346680836 5.53763637082881 6.52837886507048 5.82359641047346 6.45002898986463 6.06786923869091 0.243455373395437 0.232931216895012 0.238344467027608 0.235808584788499 0.233116302108429 0.254118834884412 0.237044150006223 0.232318729444843 0.245072890786891 0.250135031436951 0.232318729444843 0.232318729444843 0.245391620264841 0.234336224553381 0.247143927803029 0.232318729444843 0.272836065509371 0.235206232702574 0.237444229120937 3 3 - 20115604 20116291 20115869.636 20115377 20117022 - gene protein_coding_gene FALSE TRUE AT3G54290.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82039.1); similar to Os01g0861700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044877.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Hemerythrin HHE cation binding region; (InterPro:IPR012312); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.132519884005163 0.75767582792842 0.46473776709339 1 -0.327357269376028 12.4820754348536 0.132519884005163 0.255645867110876
AT2G31035_at 1.18892584480405 1.0254516903791 1.34108219073602 1.3300138917807 1.08062420797367 1.46717448536108 1.18464587881563 1.37521930591387 1.33912990879107 1.67594146333748 1.42614165650793 1.06016772616329 1.76043658334156 1.18610155968932 1.70612346758862 1.38880575915637 1.56167963190701 1.42869406546883 1.20878829015248 0.147639667093269 0.152864282971416 0.145768304789011 0.156433649473252 0.148343257194542 0.147222748324465 0.144504264745827 0.155382242665363 0.143871233398311 0.161298562860590 0.149996218227044 0.144379981283574 0.151755882569611 0.146391245194756 0.143577991314071 0.152834916847081 0.150854182261728 0.149737697285984 0.158753113625842 2 2 + 13215781 13215950 13215859.091 13215744 13215995 + gene protein_coding_gene FALSE TRUE AT2G31035.1 similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31030.1) 0.0714892997261124 0.757509486444443 0.464833345372255 1 -0.327478046826979 2.67300320046462 0.0714892997261124 0.0797903344060253
AT2G31725_at 2.57645653422918 2.27753201004929 2.58356373553876 2.30071366766959 2.02152300045260 2.13203070989703 2.56273749600507 2.13704906737684 1.98775170459092 1.89015058771751 2.08179678022121 2.47495949547219 2.01354941510972 2.48439828054014 2.56286801659841 1.9553583235194 2.19369044630728 1.72553728772654 1.82764653202028 0.195305492340627 0.195822781580982 0.199970133488076 0.193940997447015 0.191086992389801 0.206705806435437 0.194762460536819 0.194116674408322 0.201929612066461 0.197309356941208 0.199629331486867 0.191086992389801 0.202700589393062 0.200959368185909 0.195970775041917 0.194451704673671 0.200086369003583 0.200490392920827 0.195857925959389 2 2|0 -|/ 13493527 13494441 13493872.5 13493394 13494522 - gene protein_coding_gene FALSE TRUE AT2G31725.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05730.1); similar to hypothetical protein LOC406709 [Danio rerio] (GB:NP_998565.1); similar to Os11g0256200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067634.1); contains InterPro domain Protein of unknown function DUF842, eukaryotic; (InterPro:IPR008560) 0.077842074525845 0.75749917380328 0.464839271331784 1 -0.32748553386462 4.36813545955051 0.077842074525845 0.104233314235852
AT4G11640_at 3.5200238372796 3.60342587447617 3.34717776813803 3.35419000517349 3.55067007568085 3.72699514476089 3.92587752091513 3.43517868063405 4.31701218018785 4.22848123293796 4.25171743713884 4.27445101263942 4.11651036777056 4.28604273034378 4.2565014166861 4.35042790567124 4.32172866112278 4.35213739903115 4.35004519992578 0.199365257275284 0.192005343963910 0.206791331970927 0.194635989669507 0.203266537531023 0.202318886065012 0.202971872980379 0.198195450198482 0.196543638553343 0.194350550670077 0.198090361832848 0.192005343963910 0.198111374260696 0.204705186880609 0.192504835902113 0.192005343963910 0.199458726499136 0.204615082482969 0.199220947840201 4 4|0 +|/ 7022441 7023205 7022850.667 7021764 7023312 + gene protein_coding_gene FALSE TRUE AT4G11640.1 ATSR (ARABIDOPSIS THALIANA SIGNAL-RESPONSIVE); serine racemase Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases. similar to OMR1 (L-O-METHYLTHREONINE RESISTANT 1), threonine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G10050.1); similar to Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula] (GB:ABE92140.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926) -0.0743457423023169 -0.757356357741471 0.464921342752569 1 -0.327589209808144 7.84529360704112 -0.0743457423023169 0.0913887495474155
AT1G07795_at 2.15097012814875 2.84211506209377 2.69910562143804 3.06592631587380 2.73122618938264 2.53069432556966 2.63492728808430 2.48335167802221 2.33238019328998 2.73665587765964 2.61751909041166 2.54473691185724 2.90442964391547 2.35833982103955 2.57020364163133 2.41702328999812 2.63464819450901 2.56043859622620 2.80773864857227 0.244307625924853 0.246032485657795 0.247076932230444 0.255718169483057 0.262217294838169 0.258186717255334 0.250512530044715 0.245553609232073 0.260927125773487 0.248170381818068 0.249646964360186 0.244307625924853 0.244307625924853 0.249861496925327 0.258472009490861 0.249891735985027 0.253010174323024 0.255178058524358 0.246776782945067 1 1 + 2414441 2414730 2414567 2414283 2414964 + gene protein_coding_gene FALSE TRUE AT1G07795.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28725.1); similar to Thioredoxin-related [Medicago truncatula] (GB:ABD32198.1) 0.0896114497516944 0.757302153901457 0.464952494223771 1 -0.327628553997182 5.24304406201292 0.0896114497516944 0.142223871345142
AT1G08880_at 8.82396235494714 9.09167009375097 8.73255006545225 9.02366160700092 9.54159644374382 9.00164919901205 9.1972993276773 9.1346739331899 8.7856699830633 8.64046640964127 8.7049203664113 8.9833219486124 8.9925782481259 8.65699655162553 8.82066101669207 8.6961697396076 8.59850079916971 8.8891101060139 8.50300203290174 0.128276746020668 0.128496321316241 0.129425111969729 0.124524033436100 0.129122873642109 0.124983618377821 0.130179301628515 0.127144457274881 0.136727710377854 0.128508907483032 0.131168094134235 0.128960190489282 0.124498472923145 0.134776510203747 0.129607185335201 0.131155990662176 0.133228634699402 0.125527263244068 0.123568312446989 1 1|0 -|/ 2847150 2847612 2847405.1 2846952 2847784 - gene protein_coding_gene FALSE TRUE AT1G08880.1 histone H2A, putative Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT1G54690.1); similar to Histone H2AX (GB:O65759); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0813495532872288 0.757243799270181 0.464986032677475 1 -0.327670908254916 17.7862971225473 0.0813495532872288 0.116330626127847
AT3G03430_at 1.66588950783752 1.54721939750053 1.53720997109106 1.58184530817975 1.08304024406087 1.31291436350786 1.02389898650020 1.15477671102401 1.33393857461369 1.58115589267059 1.51691364208957 1.43653359728531 1.53918965471246 1.28498143179153 1.45284556962309 0.954503605312985 1.34827473038978 1.40098939457444 1.67145555456313 0.187849837435662 0.187269431136921 0.187713453131089 0.192698756616173 0.191536998176765 0.197276280334455 0.192381741673973 0.187461124168576 0.19221758013837 0.192191793416854 0.188828524898617 0.190183368510732 0.190025691778750 0.196056709325599 0.195714543864648 0.187303034785272 0.198396373359087 0.187516435417433 0.190480470659031 3 3 + 814508 814715 814620.273 814480 814739 + gene protein_coding_gene FALSE TRUE AT3G03430.1 polcalcin, putative / calcium-binding pollen allergen, putative Identical to Probable calcium-binding protein At3g03430 [Arabidopsis Thaliana] (GB:Q9SRP7); similar to polcalcin, putative / calcium-binding pollen allergen, putative [Arabidopsis thaliana] (TAIR:AT5G17480.1); similar to Polcalcin Bra n 2 (Calcium-binding pollen allergen Bra n 2) (GB:P69198); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.0656323665328748 -0.757181880968277 0.465021620978635 1 -0.327715845868878 2.81116379146516 -0.0656323665328748 0.0507631596414152
AT2G06200_at 0.653622570276257 0.639443041595113 0.86085826555209 0.844973944923306 0.78921284846408 0.925914701418109 0.702401579224871 0.818892820354705 1.13638950830349 1.0236043801298 1.08862477156707 1.09639052623240 0.94600813028916 0.817557181623155 0.861135761375913 1.11364440389196 0.830325895315057 1.22475659380364 0.908802820148176 0.201183468713487 0.196375723394386 0.201251425998273 0.203837151539364 0.195593301593602 0.198447686643703 0.201726340022024 0.201417001929027 0.200138620077146 0.193426296504640 0.203478997516531 0.200265519613035 0.192254969457222 0.195047495536805 0.209909683629432 0.192254969457222 0.210389668248618 0.202126094351578 0.196525531419341 2 0|2 /|+ 2426724 2427211 2427014.222 2426268 2427320 + gene protein_coding_gene FALSE TRUE AT2G06200.1 AtGRF6 (GROWTH-REGULATING FACTOR 6) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in root, shoot and flower similar to AtGRF5 (GROWTH-REGULATING FACTOR 5) [Arabidopsis thaliana] (TAIR:AT3G13960.1); similar to transcription activator-related [Medicago truncatula] (GB:ABE92430.1) 0.0630115545225664 0.757133102900308 0.465049657988401 1 -0.327751244562907 1.78953379357912 0.0630115545225664 0.0312989712195166
AT3G54250_at 4.17897220293616 4.38415369455265 3.02246259623781 3.41408001187911 3.96155764419154 4.26275179428782 4.44296502974849 4.05214252072653 3.62259227493863 4.21575592000646 4.47908320185246 5.06787191283332 4.21565624887296 4.30361517007353 4.37237750141103 4.19384981621245 4.07087807502244 4.33448551591498 3.9877323865946 0.197259538191033 0.200511347187827 0.201609066478438 0.199794851244664 0.199949851525408 0.201810304870208 0.205924634295059 0.205340173467905 0.213083822388877 0.205144273356780 0.205624705063472 0.204733001816949 0.203059613404285 0.198537235554976 0.207424941609707 0.20419866399557 0.20195494548657 0.205493062473850 0.198370085316565 3 3|0 -|/ 20093451 20094198 20093781.5 20093286 20095710 - gene protein_coding_gene FALSE TRUE AT3G54250.1 mevalonate diphosphate decarboxylase, putative similar to MVD1 (mevalonate diphosphate decarboxylase 1) [Arabidopsis thaliana] (TAIR:AT2G38700.1); similar to mevalonate disphosphate decarboxylase [Arnebia euchroma] (GB:ABG24207.2); similar to mevalonate disphosphate decarboxylase [Hevea brasiliensis] (GB:AAL18927.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain GHMP kinase; (InterPro:IPR006204); contains InterPro domain Diphosphomevalonate decarboxylase; (InterPro:IPR005935) -0.0808225152904835 -0.757029950720558 0.465108952079592 1 -0.327826096349866 8.1257627072137 -0.0808225152904835 0.114651006171296
AT3G60440_at 4.06899507663499 3.97401999884125 4.09728214498266 4.217356305762 3.16921066078629 2.6580315343531 5.2150375377883 3.87829809810149 2.36882624835793 3.16659939738804 3.15140667595034 4.19199740205845 2.49819608066166 2.83441378074861 3.92710274246338 3.13199045049367 2.44578895620036 3.13920510406241 2.4921833068169 0.265400717199094 0.257059180958362 0.257220976533112 0.258848441454884 0.257931353729316 0.252124572781276 0.263837014085135 0.265245282969757 0.252124572781276 0.258425120984413 0.252124572781276 0.253386028418711 0.262592621912542 0.253602872068374 0.266439029334642 0.254390254020882 0.255714978681264 0.253047969579954 0.258473574302172 3 3|0 +|/ 22349074 22350093 22349484.6 22348768 22350421 + gene protein_coding_gene FALSE TRUE AT3G60440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60450.1); similar to pRIB5 protein [Ribes nigrum] (GB:CAA07566.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.129737259072463 -0.756993910367929 0.465129669981556 1 -0.327852246679546 6.83022006962334 -0.129737259072463 0.249079381651032
AT4G33240_at 6.67852026471621 6.78900138146083 7.09888026980239 6.78321493686528 7.416417969212 7.05801268181745 6.75394771893865 7.11058582514155 6.84926823105888 7.04693066666855 6.85823911794438 6.77768370399809 7.02567831009619 7.08854710057698 6.27914908437067 7.17865761464085 7.00464180562986 6.83448448299184 7.0469852662547 0.175712738141417 0.171545252873858 0.174057961027579 0.182051461082166 0.170049148218747 0.175742489997583 0.177486186563697 0.172504240647885 0.181582316542755 0.161241943363063 0.173433658059032 0.165644331359213 0.162858520510245 0.177375465402527 0.181477680250223 0.165064943588842 0.172296289732302 0.1676046430645 0.174956466045766 4 4|0 -|/ 16029564 16030109 16029786.8 16029256 16037638 - gene protein_coding_gene FALSE TRUE AT4G33240.1|AT4G33240.2 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding| similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34260.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71010.1); similar to putative phosphatidylinositol 3,5-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP12926.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.0779707156985172 0.756893756300721 0.465187246918117 1 -0.327924911108401 13.8920459012569 0.0779707156985172 0.104908210581962
AT1G61450_at 0.427813636318675 0.55757891825917 0.054988843834983 0.511441647899683 0.479431505724644 0.610729441377894 0.476246795535789 0.605628259003604 0.851588651147964 1.03677471770803 0.948908108351346 0.782753237523564 0.914662521037798 0.876812696719542 0.70736104431768 0.700372195836755 0.49621631648014 0.755410112793689 0.562810954305105 0.203399570845059 0.204926604527594 0.206131893132389 0.215114657612221 0.209509935680847 0.202226595036727 0.202244953319919 0.205154016877032 0.21237639561826 0.206405370766545 0.209006369793258 0.206634167865777 0.205231580552785 0.211098933171068 0.208709899317304 0.203844248323998 0.222541308464568 0.20484997641227 0.205086410694758 1 1|0 +|/ 22676990 22677241 22677145.625 22676987 22677500 + gene protein_coding_gene FALSE TRUE AT1G61450.1 similar to Os05g0275600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055074.1) -0.0734575605789045 -0.756880462545427 0.465194889621164 1 -0.32793455543504 1.26041744942077 -0.0734575605789045 0.0880994255135254
AT3G02800_at 3.2809526855557 3.73803982558323 3.84334827581397 4.04908198383631 3.67958250797243 3.62617215234377 2.82264385854931 3.25980980919751 3.01882699394764 3.33621246958427 2.83018642621013 2.28983534571636 2.32076529465517 2.58347503092676 2.83183438954778 3.29732007383675 2.76317757426741 2.74259350379134 2.85348318887843 0.219080997342601 0.212575808256996 0.206248384695005 0.215829250151225 0.221776592071219 0.225512985560937 0.209235040877962 0.221808923471099 0.212556384311956 0.209178266227073 0.206220196903733 0.206220196903733 0.218116918428648 0.213561546476564 0.210880316613741 0.212096584816267 0.218618841952389 0.210889174027867 0.215422705785132 3 3 - 606654 607657 607019.545 606478 607893 - gene protein_coding_gene FALSE TRUE AT3G02800.1 phosphoprotein phosphatase similar to tyrosine specific protein phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G16480.1); similar to Protein tyrosine phosphatase, catalytic re (GB:ABD28384.1); contains InterPro domain Putative tyrosine phosphatase; (InterPro:IPR004861); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.0810377946678494 0.756748243311503 0.465270908025371 1 -0.328030469348446 6.42590689019273 0.0810377946678494 0.115470618635439
AT2G33040_at 10.6016297486447 10.6850175830286 10.7197182714283 10.6714507058621 10.509168289277 10.2794304506489 10.8228146479202 10.8171896765944 10.4740801212422 10.5555589159271 10.8780908676308 11.0273301134420 10.6666544637804 10.6794076620943 11.0006015537345 10.8178349738808 10.6072884818656 10.6687830042149 10.4035104478265 0.100238889821656 0.0973244168465775 0.0930004056191529 0.0940191640485194 0.097263890613285 0.0979695463928408 0.0982622285976888 0.0931285660463382 0.101275380979976 0.101305518363242 0.0974677582796345 0.0958353483070374 0.0967226332120228 0.0999971573630455 0.0989205231202598 0.0930004056191529 0.1010501770451 0.102940821139261 0.100825744068945 2 2|0 -|/ 14026068 14026794 14026354.3 14025857 14028257 - gene protein_coding_gene FALSE TRUE AT2G33040.1 ATP synthase gamma chain, mitochondrial (ATPC) Identical to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) (ATPC) [Arabidopsis Thaliana] (GB:Q96250); similar to ATPC2 (ATP synthase gamma chain 2) [Arabidopsis thaliana] (TAIR:AT1G15700.1); similar to ATP synthase gamma chain, mitochondrial precursor (GB:P26360); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) 0.064405705169466 0.756422298432973 0.465458341158818 1 -0.328266851021272 21.2737851142150 0.064405705169466 0.0431230567648402
AT1G75430_at 0.510169821229097 0.312685182944475 0.21569373760281 0.419293606541224 0.498165589767381 0.134829145656447 0.612785191155164 0.321910265693587 0.432188102812787 -0.0573604912046999 0.228712734709543 0.0782466315882266 0.151984278439180 0.0998365662333322 0.0927675141525401 0.230153140259794 0.0203550380805966 0.141972015248812 0.0995459516359453 0.210211697084273 0.207094812413922 0.205825163080528 0.212856094376818 0.208002885387626 0.209787321451307 0.21067785655531 0.212044434705114 0.206859355365697 0.213909402158217 0.209358794120800 0.208731492726683 0.212104609398695 0.211750842229114 0.221034744661844 0.211194083926985 0.207949103855290 0.212393073332047 0.20507041599785 1 1 - 28312022 28312421 28312261 28311782 28313271 - gene protein_coding_gene FALSE TRUE AT1G75430.1 transcription factor similar to BLH7 (BELL1-LIKE HOMEODOMAIN 7), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16400.1); similar to bell-like homeodomain protein 1 [Lycopersicon esculentum] (GB:AAP47024.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) -0.0750065633029784 -0.756268777074811 0.465546639533423 1 -0.328378156260967 0.522505573033947 -0.0750065633029784 0.0943226793852633
AT4G11280_at 5.18543102675191 5.41916037100004 6.88116808609636 7.46470346910239 5.22295979551216 4.68555778379038 5.94284574397307 5.6499009502417 5.4232531047383 5.24675822640249 4.81410022508762 5.33086563708607 4.33744138497689 4.91279066340868 4.52588767363566 4.53424358115609 4.13604826501408 4.56626568004124 5.36325542136416 0.227985205383405 0.220968081109883 0.231987322543544 0.231192014665973 0.217657324971536 0.223085078420045 0.244359523690277 0.233498583738848 0.245105439997891 0.220065328203708 0.222222355625194 0.220945988825648 0.223515018101422 0.229230170158842 0.223366139642960 0.227411695322542 0.222919708626188 0.229475261161118 0.216611136302746 4 4 + 6865319 6865894 6865564.727 6864093 6866112 + gene protein_coding_gene FALSE TRUE AT4G11280.1 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family Identical to 1-aminocyclopropane-1-carboxylate synthase 6 (EC 4.4.1.14) (ACC synthase 6) (S-adenosyl-L-methionine methylthioadenosine-lyase 6) (ACS6) [Arabidopsis Thaliana] (GB:Q9SAR0;GB:O82719;GB:Q9SUT3); similar to ACS1 (ACC SYNTHASE 1), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G61510.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Brassica juncea] (GB:CAA51227.1); similar to ACC synthase [Carica papaya] (GB:AAC98809.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Brassica oleracea] (GB:CAA57724.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.0927270507002725 -0.756093580300956 0.465647417597129 1 -0.328505151858895 10.8010297231264 -0.0927270507002725 0.151831235339872
AT1G55250_at 3.30735276111242 3.37940106114835 3.80131937657182 3.55695222751563 3.8155263734481 3.31245181807221 3.55953850664344 3.75327916066975 2.92372542220144 2.51031682206242 2.68515712608922 2.39592443228374 2.82801180695684 2.99003395079122 2.43861928392742 2.88579920923411 2.83532036594939 3.05655376571037 2.75992592283993 0.219598595168352 0.220812466896890 0.218390341180223 0.227092401468783 0.224887067440439 0.220649236859268 0.218651367686067 0.218602427399114 0.220153482628244 0.236525714870890 0.219732148230746 0.225519504525601 0.221341950569680 0.217711000685370 0.226324143857336 0.222063570710373 0.221729207445598 0.248138804930228 0.224624549746795 1 1|0 +|/ 20612429 20613309 20612903.5 20610881 20613370 + gene protein_coding_gene FALSE TRUE AT1G55250.1 HISTONE MONO-UBIQUITINATION 2/HUB2 AT1G55250 and AT1G55255 will likely be merged in the TAIR8 genome release. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. similar to HUB1 (HISTONE MONO-UBIQUITINATION 1), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G44950.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47998.1); similar to Os10g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065421.1); contains InterPro domain t-snare; (InterPro:IPR010989) 0.0773871733791535 0.755937394051524 0.465737271954834 1 -0.328618345077800 6.30860276814058 0.0773871733791535 0.103185533612380
AT2G46735_at 5.22380122747405 5.59997355350915 5.57866638684939 5.40407869669671 5.87010903586801 5.88581477457028 6.62624347230481 6.63999928805647 6.10084069377642 5.99596629029887 6.54036966318946 6.40260709766317 6.11157526679979 6.54932781260891 6.43828409095577 6.68629620531828 6.67243389985632 6.27942529452155 5.85262856032421 0.183391299354766 0.180567207213229 0.183241330080887 0.189359832841721 0.176029709379606 0.189492819355351 0.181777207102795 0.194118980820165 0.182881014808320 0.179815958819071 0.188249389779869 0.183188806900136 0.187787958227223 0.178744124196310 0.177611850585736 0.179023927463703 0.184513641767145 0.184530172633687 0.176855203180567 2 2 + 19211565 19211893 19211727.364 19211255 19212182 + gene protein_coding_gene FALSE TRUE AT2G46735.1 unknown protein 0.0695287865288157 0.75573365473978 0.465854500256784 1 -0.328765970161711 12.0751783533314 0.0695287865288157 0.0718588259140587
AT4G09490_at 2.85874478630474 3.03776153716811 2.52305621233595 2.48063790830851 3.22108141047059 3.12969546596102 2.45643885205903 2.41480111650532 2.76793484227272 2.80601021237449 2.95003766014415 2.98678576644213 2.50646261455145 3.05346894563604 3.07880758121739 2.73486489942514 2.52864887524543 2.47965859080598 2.85512699722551 0.222297021239099 0.229138621519288 0.227586824104838 0.219494282695128 0.220744397458386 0.242883378044685 0.227264615098798 0.233266416285294 0.220378109840800 0.223749324439517 0.221200267209915 0.224736600069448 0.223453465751557 0.219874425545593 0.228082817027806 0.221422425733582 0.230917844386943 0.219421211479812 0.222073427113670 4 0|4 /|- 6015601 6015990 6015809.444 6015559 6016572 - gene protein_coding_gene FALSE TRUE AT4G09490.1 RNase H domain-containing protein similar to nucleic acid binding / ribonuclease H [Arabidopsis thaliana] (TAIR:AT4G37620.1); similar to 80C09_17 [Brassica rapa subsp. pekinensis] (GB:AAZ41828.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.0634161794928043 0.755289567435411 0.466110085797947 1 -0.329087623080594 5.56504343645968 0.0634161794928043 0.0362719444011268
AT3G59190_at 1.34317615109317 1.54997214392181 1.86686720824546 1.60852698664438 1.47744018967739 1.19697207669946 1.59665770944523 1.77019141245132 2.22458113827811 1.98129642562356 1.69928623048528 1.93482330580401 1.66247709255612 1.79548746856346 1.99931121617673 1.75532401555692 1.93405943532620 2.27625132987905 1.78697420194517 0.187538227167472 0.186701176170645 0.183608232264160 0.186092555815144 0.187131137008890 0.185207391447515 0.186526393457342 0.18809288887732 0.193729617844709 0.190600925773206 0.184840778913114 0.19048453790756 0.190070829904495 0.188070398740095 0.194240089797599 0.184553204307562 0.188489607262728 0.188463645885186 0.20074895584563 3 0|3 /|+ 21896902 21897535 21897277 21895504 21897753 + gene protein_coding_gene FALSE TRUE AT3G59190.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14103.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G59200.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92026.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.0715187412000084 -0.755168161450226 0.466179974062529 1 -0.329175528187213 3.49109786831015 -0.0715187412000084 0.0808520133173453
AT1G66360_at 1.35034282496147 1.19455450277350 1.60499703880602 2.06849264802779 1.16357812832528 1.27089658332079 1.14324571289156 1.24262446815065 1.08391006853868 1.38002842555112 1.33871529584119 1.35200596978306 1.28189864047756 0.99639971659678 1.26286025550432 0.944795515396783 1.33274650921901 1.01062605560750 1.54897061782967 0.24957556512122 0.256978648944495 0.258218444490119 0.258677125131427 0.247923146620217 0.255934773204379 0.254772654509141 0.251335801001920 0.248530462920854 0.255486458836774 0.254583056494579 0.247923146620217 0.250134699915353 0.251476973184395 0.247923146620217 0.251666591701704 0.259973616735177 0.258409407471664 0.250405094774884 1 1|0 +|/ 24755134 24756229 24755861.667 24755040 24756497 + gene protein_coding_gene FALSE TRUE AT1G66360.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37740.1); similar to C2 [Medicago truncatula] (GB:ABE81436.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0733344232945651 0.755027440416614 0.466260989498309 1 -0.329277402742642 2.64366267112868 0.0733344232945651 0.088324287696601
AT1G08350_at 3.48353249488045 4.03806203830684 2.98486966491273 2.83506199597682 3.42821272243768 3.19069136307518 3.00857768867885 2.76198890664729 3.42529294263347 3.00595114555610 3.30315291386741 3.74501212549874 3.29490281229825 3.43364775658922 3.51717246734369 3.0652903727048 2.48627862226159 3.57722757137168 3.32241567781573 0.231101629602893 0.220596223931165 0.220769857565425 0.215339609040881 0.213951639434413 0.230006605136234 0.218380619272092 0.216024453695382 0.233912177420903 0.212087381910638 0.214169399659212 0.219614108369195 0.220289448806699 0.214826628634671 0.216561639769652 0.212023594084803 0.224946445123664 0.220802941009232 0.210742345684704 1 1 - 2632981 2633749 2633417.636 2632807 2635849 - gene protein_coding_gene FALSE TRUE AT1G08350.1|AT1G08350.2 endomembrane protein 70 family protein similar to transporter [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to putative syntaxin SYP111 [Oryza sativa (japonica cultivar-group)] (GB:BAC57816.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240)|similar to transporter [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to Putative endosomal protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52585.1); similar to Os10g0112600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064040.1); similar to Os03g0237000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049492.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) -0.0808578436438 -0.754363489849287 0.466643357339747 1 -0.329757838999789 6.49340236048632 -0.0808578436438 0.115722699956125
AT3G01620_at 1.19114474162515 0.902009896735299 1.36497426297994 1.02248359466718 0.922361719680545 0.753713617537509 0.90403374145581 1.02635227641591 0.890465727943913 0.86398248051003 1.22231614290607 1.01172350042074 1.18429189543345 1.38240994563071 0.986313506753921 0.853676783500142 1.35315737551166 1.26510743927329 1.31239360910852 0.193770491850604 0.198440620702954 0.196701506809628 0.191711197469265 0.193118773301381 0.192822972813995 0.192838640866094 0.196582629415753 0.191946224477404 0.199091601360351 0.193053926779757 0.199730149480655 0.204924124454593 0.200510276495279 0.199962074868975 0.192691369525350 0.193858759719046 0.202700334951581 0.195444355083517 3 3 - 235393 235895 235622.818 235204 236932 - gene protein_coding_gene FALSE TRUE AT3G01620.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G27540.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G14480.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) 0.0725460512414208 0.754067463864143 0.46681390220103 1 -0.329971922463522 2.10071182115362 0.0725460512414208 0.0855357269070001
AT2G28010_at 1.19802855620286 1.05852917341493 0.623669836360045 1.26704866113694 1.07322502792054 1.10151405722861 0.961536699955217 1.02995641801393 1.34727657577142 1.37808162194615 1.10602037924044 1.25051859554567 0.931946867939632 0.79639936733434 1.11943295914105 0.957826628262673 0.979991963399722 1.08244054383021 0.704635531205494 0.217051003241579 0.223040376210000 0.229374090785186 0.228633385877033 0.217051003241579 0.224680089023871 0.217051003241579 0.225330223447868 0.224624894342215 0.225873779756765 0.221097950508218 0.217051003241579 0.237653431066225 0.217051003241579 0.228726943897216 0.217051003241579 0.224944201194230 0.22326867399287 0.223823259807111 2 2 - 11937684 11938227 11937984.444 11937656 11938846 - gene protein_coding_gene FALSE TRUE AT2G28010.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT2G28030.1); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT2G28040.1); similar to Eukaryotic aspartyl protease, putative [Medicago truncatula] (GB:ABE90753.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.0804536980614207 -0.753592093837132 0.467087852425435 1 -0.330315548979294 2.12489025680967 -0.0804536980614207 0.114645014214296
AT2G23920_at 1.30466286319020 1.22904671446955 1.40738780350450 1.68602851915607 1.38239961181435 1.43515555392917 1.00625047647560 1.54951426864526 1.83759002090332 1.46070806184350 1.50076631323436 1.22995985368223 1.63194690374717 1.41799607583055 1.40313435171663 1.37095064406021 1.24852126759541 1.75277662344585 1.18227391766786 0.183227685586919 0.182728056775580 0.178678747915278 0.189687981548420 0.180298167282637 0.182279444986688 0.18113385273004 0.178216391476778 0.193053204608664 0.187905039061570 0.177979473263309 0.184009659682628 0.193776362037062 0.185429462446712 0.188324655287007 0.177979473263309 0.185837792900136 0.186263009215963 0.181375617936916 2 2|0 +|/ 10188080 10188261 10188155 10188078 10188291 + gene protein_coding_gene FALSE TRUE AT2G23920.1 unknown protein 0.0781783977158483 0.753542126653752 0.467116653849264 1 -0.330351657072092 2.84407097854923 0.0781783977158483 0.106857182460778
AT3G49300_at 2.61838599764338 2.66648163366272 2.56531183189740 3.01473659119398 2.48536246345266 2.43330090104418 2.59277620699585 2.43904606499585 3.04480248090296 2.86049324760802 2.50727631082868 3.02513307145877 2.63378799895301 3.07242724147829 2.74886081806339 2.77396530325244 3.05472952338853 2.69601670084407 2.24201132632729 0.179075722100297 0.180331801995599 0.189214382868747 0.179115934373493 0.178135655936700 0.179591577062604 0.18385441093091 0.185136506299817 0.188323434292496 0.193449009848795 0.187811465015478 0.184827708464871 0.179789014302089 0.180161429683590 0.182705798111745 0.181996048237956 0.183045928071245 0.183170223294711 0.179212573146135 3 3|0 -|/ 18288031 18288541 18288223.143 18287755 18288590 - gene protein_coding_gene FALSE TRUE AT3G49300.1 proline-rich family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49305.1) 0.0718805369132895 0.753296330911538 0.467258348568037 1 -0.330529246822173 5.36682203101716 0.0718805369132895 0.0831093410077857
AT3G02885_at 3.35789939274864 3.54824847276654 3.24045333463821 3.28157439934416 3.06165443870655 3.38738559350237 2.83893423251766 3.66559542547991 3.68899414015108 3.79257038011532 3.6202992471011 3.73206480287101 3.33543726815705 3.66418199720208 3.22484437038482 3.90826581116379 3.52527050587068 3.56167716584644 3.46893487838766 0.177888297717749 0.177842137369101 0.180612945346253 0.179487092335026 0.178932256487758 0.188588216553659 0.182488180238734 0.183543251356987 0.176852689365425 0.174498853279198 0.174107883667791 0.175098894169312 0.172804637031854 0.171912420657082 0.178718446859616 0.171660361520054 0.18351030681812 0.172288187106852 0.180306003079625 3 3|0 -|/ 638333 638977 638615.8 638028 639062 - gene protein_coding_gene FALSE TRUE AT3G02885.1 GASA5 (GAST1 PROTEIN HOMOLOG 5) similar to gibberellin-regulated family protein [Arabidopsis thaliana] (TAIR:AT2G30810.1); similar to GASA5 (GB:AAA98520.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) -0.0942818797368832 -0.753051867157126 0.467399302439892 1 -0.330705822859998 6.90855396735932 -0.0942818797368832 0.157412526261918
AT1G68220_at 7.1217290810157 7.25019978651912 5.74505585538967 5.65342981644075 6.68488261541206 6.32881021130403 5.59664857949373 5.90290418466156 3.94625172797625 4.7554384190129 4.44769165160733 4.96496738210467 4.53816449156164 4.56216141215880 5.34936038017627 4.46139432245334 5.37757489304167 5.53300888601584 4.4818166411828 0.25023498780191 0.253719040132249 0.251764143365032 0.264063543826999 0.245769313414931 0.253177995408509 0.245769313414931 0.257652867665758 0.250294868536715 0.250503583856763 0.247383400982617 0.25213732335299 0.249126004973194 0.251353264047976 0.252864280429381 0.252975101348120 0.254490429453241 0.25189018965609 0.252851150263239 1 1 + 25574213 25575163 25574768.091 25573894 25575375 + gene protein_coding_gene FALSE TRUE AT1G68220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13380.1); similar to Os08g0261100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061393.1); similar to Os07g0462200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059580.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.0724811906900314 0.752866340507095 0.467506292100344 1 -0.330839794483965 10.9348538613365 0.0724811906900314 0.0857415754072685
AT4G21090_at 5.68729034899409 5.5683657505972 6.05932879718703 5.85144279749049 6.07750380662535 5.55675810525153 5.43133214080485 5.71668961605703 4.88081193179524 5.05894904004875 4.71504465520214 4.60747984439526 4.74140702051723 4.54539213309298 4.58821574890155 4.95379814375540 4.53962819381838 4.45629744153228 5.32158766549699 0.223062677512130 0.208209210026124 0.223895662503544 0.223030376039389 0.214871180287326 0.221541857813701 0.217221405380623 0.209335366935985 0.220615125387083 0.205570363570197 0.213193938452367 0.205570363570197 0.215629341357777 0.212768819290901 0.216292738725600 0.214635114655308 0.209785795202841 0.213810412647577 0.210001161862896 4 4|0 -|/ 11256690 11257470 11257000 11256470 11258599 - gene protein_coding_gene FALSE TRUE AT4G21090.1|AT4G21090.2|AT4G21090.3 adrenodoxin-like ferredoxin 1|electron carrier similar to adrenodoxin-like ferredoxin 2 [Arabidopsis thaliana] (TAIR:AT4G05450.1); similar to Adrenodoxin [Medicago truncatula] (GB:ABE77794.1); contains InterPro domain Adrenodoxin; (InterPro:IPR001055); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.0791847011348925 -0.75228475237379 0.467841783337784 1 -0.331259576990998 10.6088509754254 -0.0791847011348925 0.110804270542865
AT1G30220_at 1.93744003556452 3.07317987928624 3.2914085113949 3.39237689301408 3.20884008337467 2.92443206537838 3.08203949999989 3.21125424049144 3.14678181085367 2.86806609152636 2.33577416939399 2.40033788353146 2.87432163936205 2.19716316175188 2.07919693218196 2.3320394354083 2.28666401654966 2.63871202143498 2.96784136600171 0.239380707630524 0.239372801031472 0.253076269582370 0.250691216998682 0.238024791442492 0.242980147880613 0.238024791442492 0.238024791442492 0.245780222070653 0.241545420903424 0.239009244190775 0.238024791442492 0.242408558904163 0.240714446313673 0.238956946283609 0.238024791442492 0.266118513687509 0.254068799726632 0.238024791442492 1 1 - 10633065 10633528 10633289.727 10632805 10635455 - gene protein_coding_gene FALSE TRUE AT1G30220.1 ATINT2 (INOSITOL TRANSPORTER 2); carbohydrate transporter/ sugar porter Identical to Probable inositol transporter 2 (INT2) [Arabidopsis Thaliana] (GB:Q9C757); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G35740.1); similar to ATINT4 (INOSITOL TRANSPORTER 4), carbohydrate transporter/ myo-inositol:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT4G16480.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABD32437.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAF91432.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAF91431.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.111458812110236 -0.752252800910832 0.467860219071992 1 -0.331282630727716 5.70874935785253 -0.111458812110236 0.204591601138696
AT1G22090_at 0.488655572767172 0.564267938161534 0.928910541708312 1.07223425304008 0.623250634404913 1.07882265448942 0.781527048686677 1.15949514916635 1.43553828242461 0.9299469882848 1.21553670338999 0.754255139681617 0.528181558970095 1.08966512859769 1.26272464200159 0.794120874288348 0.745439772410749 0.99171745302853 0.467528786360179 0.185325315616873 0.189024737908208 0.190348048202417 0.185768700745405 0.184597298789837 0.185573837490558 0.187677439154501 0.184597298789837 0.192852358451558 0.192347854335460 0.194868990856455 0.192463059311357 0.184597298789837 0.188067104130586 0.186839474871257 0.184597298789837 0.195834053292204 0.193301145673587 0.187575135993955 1 1|0 +|/ 7796411 7797185 7796861.5 7795697 7797414 + gene protein_coding_gene FALSE TRUE AT1G22090.1 EMB2204 (EMBRYO DEFECTIVE 2204) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02770.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) 0.0778426168690649 0.752081773497658 0.46795890831768 1 -0.331406016176540 1.77066706308769 0.0778426168690649 0.106208860475273
AT1G63610_at 8.62356412632572 8.45511741766378 8.34956315128193 8.0683964794019 8.57319278005575 8.11102136491604 8.91409746475634 8.42273331843973 8.37313239477414 8.60816554216119 8.71400703796887 8.7769942137593 8.45801536856768 8.59517400153605 9.11776422832582 8.68856216589302 8.62341203045083 8.48095392286 8.58877659893116 0.109365125007557 0.109837854646334 0.113101429260838 0.107454303419103 0.115524647614052 0.11363648201546 0.115529464301336 0.106845266873739 0.107487887330424 0.112932943953379 0.107253548648348 0.110024685123826 0.112663810043977 0.112150375963010 0.112607752817194 0.106845266873739 0.117256072840726 0.112447593758412 0.106845266873739 1 1 - 23587341 23588453 23587693.545 23587184 23589390 - gene protein_coding_gene FALSE TRUE AT1G63610.1|AT1G63610.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14910.1); similar to Os02g0833400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048635.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87215.1) -0.0849162226672282 -0.751783164644357 0.468131248436026 1 -0.331621383450955 17.0423200377513 -0.0849162226672282 0.12978755198167
AT3G50740_at 8.46018911578342 8.6237377091996 6.45520592777258 6.78841776286617 8.7605832106318 8.31254282582677 6.62364393133339 6.37399028640986 4.94703006473556 6.29765893320531 5.95582017121062 7.1031591430777 6.78574342689145 6.44355707582773 5.62166913651221 5.6393417437577 5.9677471481033 5.95373604636233 7.0106752653463 0.207871984840737 0.208493402837979 0.207871984840737 0.212341609013761 0.218867900289846 0.215198477360978 0.211606791071025 0.210150268703786 0.228432530360696 0.213133292432177 0.213527521174864 0.210598522791119 0.210987248973637 0.207871984840737 0.212123007418007 0.214108644734576 0.228948957895902 0.211041062469425 0.212032898187743 3 3 - 18866353 18866889 18866676 18866142 18867865 - gene protein_coding_gene FALSE TRUE AT3G50740.1 UGT72E1 (UDP-glucosyl transferase 72E1); UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G66690.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G26310.1); similar to Anthocyanidin 3-O-glucosyltransferase (Flavonol 3-O-glucosyltransferase 5) (UDP-glucose flavonoid 3-O-glucosyltransferase 5) (GB:Q40287); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0787612432324618 0.751675084481178 0.468193636084478 1 -0.331699315849794 13.6842729250097 0.0787612432324618 0.109564978822368
AT1G71690_at 1.64392415216819 1.27541555741304 1.74544531635278 1.74929383647497 1.06909420458441 1.43230297173855 1.91494763422639 1.37553031892180 1.48825555472560 1.57554198060530 1.18095115402625 1.13006800341830 1.15418535308851 1.49188288129732 1.51211144675259 1.53987021552119 1.53418525197512 1.51208723887052 1.43028871594653 0.216897580441199 0.220835505288530 0.221922877786433 0.222865551792717 0.219847131257829 0.219558164987305 0.230583899201721 0.231086306807499 0.229244331736210 0.220878498929998 0.217337415245133 0.234240942342497 0.226429981963971 0.234286518944509 0.229192704421563 0.224248778391664 0.22769428896313 0.228086751221217 0.229621903207223 1 1 + 26952145 26952699 26952398.818 26951427 26952830 + gene protein_coding_gene FALSE TRUE AT1G71690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33800.1); similar to Os12g0204500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066378.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) -0.0847656953508845 -0.751672546002232 0.468195101446504 1 -0.331701146127790 2.96571747075729 -0.0847656953508845 0.129352433692069
AT2G05290_at 0.877443906374142 1.10949362159168 1.45442262635616 1.46927104592705 0.854441581643286 1.43726396129851 0.781858207045976 0.997902252645552 1.20658826845851 1.44943124221535 1.05383927333495 0.97817601186534 0.971621779376569 1.22591019524823 1.23789619798432 0.598984691077904 1.81867833112920 0.673021517560958 1.15796971279870 0.220371289670539 0.216546342536622 0.218649400047323 0.218156550567243 0.223303543696306 0.21591341483936 0.213707559853591 0.217244222285527 0.22039433054602 0.213707559853591 0.218620209250881 0.217370255455057 0.221464968718974 0.213707559853591 0.213707559853591 0.218677078843182 0.227570842703846 0.218860842277133 0.223261397468295 2 2 - 1925512 1926233 1925956 1924847 1926678 - gene protein_coding_gene FALSE TRUE AT2G05290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1) 0.0803057827157902 0.751645389965251 0.46821077771847 1 -0.331720725655723 2.29331002078765 0.0803057827157902 0.114846838340181
AT1G18270_at 6.95571056219385 7.20871223597381 7.46690448943036 7.11452609071602 7.34253924863739 7.18645218465459 6.89822449882757 6.51291880038642 6.79344161125262 6.97468303370354 6.54657035251778 6.87610524585685 6.88211218248808 6.9618820480977 6.33053092343836 6.80314266693776 6.96442729779396 6.94631069821949 7.2867519714608 0.159718172796901 0.151497839850072 0.162358375526858 0.160675566300393 0.159359386004659 0.165739636735961 0.153870896678303 0.150097993667495 0.160594407928302 0.154867758558035 0.153770889692806 0.160286435491533 0.156026869429397 0.155112566075226 0.156588640509106 0.154292523999493 0.170045020197799 0.156180554876664 0.150097993667495 1 1|0 -|/ 6283630 6284473 6284056.444 6283405 6293864 - gene protein_coding_gene FALSE TRUE AT1G18270.1 ketose-bisphosphate aldolase class-II family protein similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71170.1); similar to unnamed protein product [Asper (GB:BAE56140.1); similar to Os06g0258900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057323.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain Ketose-bisphosphate aldolase, class-II; (InterPro:IPR000771); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204) 0.0771534752303029 0.75149530135738 0.46829742484307 1 -0.331828928277878 13.9893372050480 0.0771534752303029 0.103977491673807
AT3G20320_at 6.91120552077035 7.11505825571033 6.1781403114415 6.35883216503468 6.75236150148804 6.49339223488326 7.43020582797442 7.15587216573687 6.63969510134442 6.4835559379383 7.30950144731128 7.33780003827187 7.26052196341623 7.37013321815828 7.71569380884708 7.4848280197319 6.65375978115197 6.77516536247894 6.89633450540428 0.189189819514689 0.191175556227984 0.197601793489706 0.199393795463299 0.195727329144286 0.188349635622738 0.190444481320174 0.187613138246275 0.218216365699597 0.196217389579737 0.188327440521165 0.197536496712033 0.186047511470316 0.186047511470316 0.195476927360494 0.1909129338666 0.201676689711573 0.198460188612102 0.188302256559718 3 3 - 7087673 7088921 7088500.636 7087477 7089868 - gene protein_coding_gene FALSE TRUE AT3G20320.1|AT3G20320.2 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. similar to Os01g0974000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045550.1); similar to ABC-type transport system-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL53419.1); contains InterPro domain Mammalian cell entry related; (InterPro:IPR003399) -0.0710868079887574 -0.751415308896575 0.468343609152842 1 -0.331886588948744 13.7551938161216 -0.0710868079887574 0.0805270644198994
AT2G28940_at 6.54991444673041 6.56203322661341 5.70304759570504 5.43423679540148 6.49026587377772 5.96674088355056 4.21529588717963 4.04675668894397 5.9308526864047 4.93182437975867 5.12683884187042 5.59979274594628 4.74083925807794 5.69983972922014 4.79996800784893 5.07006743386083 4.26854898260508 4.86443954768557 5.40043586748254 0.234899504804845 0.228361045608002 0.23215010424667 0.230273608191502 0.223544262776478 0.230366246069233 0.230849146762135 0.233706784196201 0.221763979284787 0.224527429382197 0.220456829692610 0.220456829692610 0.224674392675924 0.220456829692610 0.221544167663165 0.220456829692610 0.234144000467567 0.239801490533768 0.224133996537764 2 2 - 12433964 12434574 12434298.091 12433787 12435807 - gene protein_coding_gene FALSE TRUE AT2G28940.1|AT2G28940.2 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G39110.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G09830.2); similar to Os02g0819600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048536.1); similar to protein serine/threonine kinase [Lophopyrum elongatum] (GB:AAF43496.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0776634492913011 0.751035900855489 0.468562702774359 1 -0.332160001521694 10.8422011562068 0.0776634492913011 0.105958360299670
AT2G19045_at 2.5579333670254 1.81217165537802 2.16424282507337 2.81909571320192 2.1336669944093 1.93703183647681 2.37924019322160 2.21478285229427 2.44291926550127 2.65931990146613 2.50135176979382 2.35350417002457 2.57034908665999 2.47964979576684 2.83294407176797 2.32391146785259 3.38440890000548 3.08226090588656 2.43162921451910 0.355933486077691 0.333142263998604 0.325546187195199 0.335975671514332 0.325546187195199 0.333373888827558 0.334366037281312 0.325546187195199 0.357947878996972 0.325546187195199 0.325546187195199 0.325546187195199 0.325546187195199 0.329090264506695 0.325546187195199 0.325546187195199 0.325546187195199 0.325546187195199 0.349272044065661 2 2 + 8258848 8258950 8258904 8258756 8258974 + gene protein_coding_gene FALSE TRUE AT2G19045.1 similar to RALFL11 (RALF-LIKE 11) [Arabidopsis thaliana] (TAIR:AT2G19030.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.101117692892378 0.750908774470185 0.468636127894153 1 -0.332251584917102 4.8534391703677 0.101117692892378 0.177387736187170
AT3G62240_at 6.65652287740276 7.81053061054475 7.42470697237667 7.39746078076933 7.38300833392423 7.31952771558608 6.8663747326149 7.2128309232575 6.71160970101989 6.86265011176253 6.79799915698754 7.24519764707242 6.75395062680337 6.71807636743436 6.48288254062051 7.07126208081475 6.53240915876126 6.18317936737055 6.65172126993878 0.202860449423087 0.20414892567312 0.210469192770338 0.204256429714565 0.206919212186699 0.207264736964251 0.212490060390262 0.209050465238818 0.231073971491454 0.200916452957550 0.199616043950659 0.202582646946604 0.20563045291293 0.218811514015646 0.206995933191892 0.199616043950659 0.224111833204946 0.212545732642911 0.199616043950659 3 3 - 23044672 23045121 23044887.818 23044417 23047740 - gene protein_coding_gene FALSE TRUE AT3G62240.1 zinc finger (C2H2 type) family protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G47090.1); similar to Os05g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055084.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98500.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.112868544350895 0.750768800913594 0.468716981645623 1 -0.332352407539275 13.9914270245463 0.112868544350895 0.208854674770058
AT1G73710_at 5.05567581716962 5.14944308745235 5.54657432716254 5.53250995677198 5.32802675888375 5.29709738406196 5.20288332970137 5.2956882699484 4.62626052120415 5.28852057164613 4.50855305468042 4.85979696610108 5.20489368220429 4.69921810833416 4.60755233586228 5.18473696683723 5.01207231337773 4.52507105033587 4.94077481959341 0.175307916597394 0.171928889515684 0.187389526800320 0.174503646049520 0.172999312876907 0.172321229979855 0.173810396689597 0.170640339751757 0.170471230461777 0.174461527838913 0.175493540345416 0.174078619899003 0.16807883251377 0.184747394882846 0.174296421167822 0.16807883251377 0.178093003557899 0.1719382500392 0.172832175457816 1 1 + 27727243 27727603 27727387.545 27724851 27727826 + gene protein_coding_gene FALSE TRUE AT1G73710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23020.1); similar to crp1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06967.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0617571597770945 0.750549861097887 0.468843466832752 1 -0.332510075673033 10.1895317566596 0.0617571597770945 0.0235757943539197
AT1G30825_at 5.22159625688880 5.40926172197769 4.71175357291064 4.66699943592187 4.97524517658692 5.2547702864338 5.14495052493205 4.63017530408738 4.56067526365336 4.00363514927974 3.98917708723343 4.48114833824179 4.25696464462861 4.17503501506158 4.55342559228353 4.49714065824352 4.81666496497745 4.14095460138554 4.39619883363589 0.25989549049764 0.255158331136831 0.257673807827212 0.26485802240505 0.252955513254135 0.260237859305434 0.261297472587491 0.259487297784391 0.255635755384409 0.260840413447070 0.254668434908593 0.252955513254135 0.261889272121966 0.262529878838304 0.253944646797069 0.252955513254135 0.257615219706937 0.256542126374731 0.261107947310166 1 1|0 +|/ 10961876 10962679 10962276.111 10960922 10963163 + gene protein_coding_gene FALSE TRUE AT1G30825.1 DIS2 (DISTORTED TRICHOMES 2); structural molecule Involved in trichome maturation. mutant displays enlarged trichomes similar to ARPC2B (actin-related protein C2B), structural molecule [Arabidopsis thaliana] (TAIR:AT2G33385.1); similar to Os04g0512300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053297.1); similar to Actin-related protein Arp2/3 complex, subunit ARPC2 (ISS) [Ostreococcus tauri] (GB:CAL53053.1); contains InterPro domain Arp2/3 complex, 34kDa subunit p34-Arc; (InterPro:IPR007188) -0.0778298600537857 -0.750538979920488 0.468849753633531 1 -0.332517910612159 9.34383584077402 -0.0778298600537857 0.106727046198337
AT2G20520_at 0.746806720044563 0.970853045438011 1.18210514795221 0.747872444590684 0.837901492173097 0.66014941236701 0.937163794247681 0.850283989442393 1.6463309518206 0.735747909935081 1.29105460224578 0.89407345920159 1.18964812636558 0.613218442020675 1.06418730052947 0.584668905580477 1.24336717613889 0.990026022876776 0.95315027619528 0.210450355891180 0.213185697148061 0.221269304066837 0.212465390432182 0.212153640399115 0.218669367388074 0.215221471004471 0.210450355891180 0.224072890425530 0.213445641031237 0.210450355891180 0.212272578211581 0.220518581828528 0.220424982418542 0.213135393412153 0.214414347301196 0.21965057842863 0.214635774265430 0.210598821712596 2 2 + 8847897 8848367 8848137 8847744 8848542 + gene protein_coding_gene FALSE TRUE AT2G20520.1 FLA6 (FLA6) fasciclin-like arabinogalactan-protein 6 (Fla6) Identical to Fasciclin-like arabinogalactan protein 6 precursor (FLA6) [Arabidopsis Thaliana] (GB:Q9SIL7;GB:Q9C5Q5); similar to FLA9 (FLA9) [Arabidopsis thaliana] (TAIR:AT1G03870.1); similar to unknown [Brassica rapa] (GB:ABK78690.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.0736161523180807 -0.750345192784948 0.468961726649953 1 -0.332657429090628 1.91440378095873 -0.0736161523180807 0.0912276661869108
AT3G25480_at 7.5762322150128 7.77095802710943 7.68479089628272 7.4850111019872 8.03491252704032 7.85213916265047 8.41759855384897 8.03288985492126 6.8353747881718 7.35211934501882 7.56090917599234 7.60802590372738 7.3138824010539 7.36321676912791 8.0292858436288 7.90714633871184 7.69248607257137 7.20042476442319 7.57348052762747 0.192433564779628 0.185785409322388 0.185405416229077 0.185689397709313 0.191084130306267 0.188741277321374 0.199155756918883 0.191012697307079 0.207532911139216 0.190006699422953 0.186240470810088 0.194533324345455 0.198353947944416 0.192896188636096 0.19746548487216 0.184898527603962 0.186351314316106 0.212020901301906 0.18950409428736 3 3 - 9236833 9237615 9237271.636 9236433 9237844 - gene protein_coding_gene FALSE TRUE AT3G25480.1 rhodanese-like domain-containing protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G01050.1); similar to rhodanese domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82378.1); similar to Os01g0889800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045047.1); contains domain CHITINASE (PTHR11177:SF3); contains domain Rhodanese/Cell cycle control phosphatase (SSF52821); contains domain CHITINASE (PTHR11177); contains domain no description (G3D.3.40.250.10) 0.0727788488244794 0.749856544627203 0.469244149692571 1 -0.33300909190174 15.2758567318203 0.0727788488244794 0.0881113380288292
AT1G70100_at 5.7322977007482 5.95153614009368 4.86793702773907 5.2802952761932 6.51596046772298 6.43823586490824 5.81293219769547 5.87663380809772 5.91662100182482 5.43062595023644 6.39970770310575 6.25157246482831 5.57124883078147 6.12218206102159 6.04321443115342 5.73165727999244 5.0760863513869 5.92694364953705 5.69197301057127 0.230077131809253 0.222229212873153 0.239259699437299 0.225127341701377 0.226226252434643 0.239482477908491 0.22882255424814 0.23096540635116 0.226888127077193 0.237535773271661 0.225721165227618 0.232191967221544 0.226038543837205 0.249775588972827 0.225561565515126 0.227036578264995 0.241548619213032 0.227180225219402 0.233330001863022 1 1|0 +|/ 26408491 26409177 26408758.2 26406746 26409782 + gene protein_coding_gene FALSE TRUE AT1G70100.1|AT1G70100.2|AT1G70100.3|AT1G70100.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24160.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE84619.1) 0.0714219032068977 0.749594353173583 0.469395732287632 1 -0.333197697372461 11.5945118524098 0.0714219032068977 0.082669397035115
AT3G60130_at 7.87488341237082 8.23240524922355 7.5367175620282 7.16339419721769 7.61594900856272 7.36848138256352 6.76332921209164 6.50325093527174 8.25810659783368 7.76867453214865 8.92465531934111 7.7720644200018 8.18957374066355 8.22184043124518 8.28447461960831 7.54854935057555 7.16012046966394 8.24048610586303 7.86441675709431 0.208926528497866 0.193696592799642 0.194131490169168 0.207092148063012 0.19955954603341 0.203523214060425 0.204572818052792 0.212895400914823 0.215665467677033 0.207519461765057 0.197302610957037 0.198625662702929 0.199650339229180 0.194168283639668 0.201196546608765 0.195563400344203 0.212548544940597 0.214541400570116 0.207821181361516 3 3|0 +|/ 22223404 22224498 22223935.625 22221221 22224815 + gene protein_coding_gene FALSE TRUE AT3G60130.1|AT3G60130.2|AT3G60130.3 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (YLS1)|hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G42260.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE83886.1); similar to OSIGBa0135C13.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66812.1); similar to OSJNBa0022H21.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE05483.2); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G42260.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to beta-glucosidase (GB:AAA91166.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to beta-glucosidase (GB:AAA91166.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.07832813172418 0.749336653970627 0.469544747891019 1 -0.33338301389314 15.3855279629892 0.07832813172418 0.108910813176875
AT1G56340_at 10.3469487203783 10.3981923969198 10.6962109838210 10.6486585240912 10.0359028097955 9.73722504239793 9.4288625101003 9.50315483687043 9.46234308837953 9.30916398921311 9.29350924020644 9.47868468343129 9.15921495640691 9.09513095919338 9.49162760633812 8.80755668952444 8.58131201175279 8.98753983134637 9.25108994861132 0.114976417555960 0.115266218759065 0.114976417555960 0.114976417555960 0.115125849167421 0.118039634698838 0.119271231445451 0.117948624420617 0.130075281137797 0.120282325418708 0.116880400560355 0.114976417555960 0.116763554643480 0.120790290695062 0.116950411677282 0.116177011454593 0.136187826911173 0.126534693766107 0.122651228377849 1 1|0 -|/ 21093845 21095044 21094397.429 21093509 21096324 - gene protein_coding_gene FALSE TRUE AT1G56340.1|AT1G56340.2 CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [Glycine max] (GB:BAF36056.1); similar to calreticulin (GB:AAA80652.1); similar to Calreticulin-2 precursor (GB:Q38858); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)|Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to Calreticulin precursor (GB:P93508); similar to calreticulin (GB:AAA80652.1); similar to Calreticulin-2 precursor (GB:Q38858); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580) 0.0655830229164103 0.749201428946818 0.469622954260417 1 -0.333480234044648 19.3257383143849 0.0655830229164103 0.0546192182703193
AT3G58970_at 8.08836671497643 8.31806888617864 8.15808470943002 8.10227919066772 7.97677960694095 8.211574388273 7.91275080655495 8.0504587864411 8.2129417990125 7.65731786759586 7.86127111744016 7.67254553685746 7.6128280165249 7.72443355383493 7.39970534572083 8.04242276964719 8.03637857010533 7.7722536180179 7.88666607566903 0.167622622341121 0.167005213073423 0.169391001264949 0.163714135633363 0.169277463491144 0.178341510543831 0.170934228178433 0.165245274380887 0.180147863445611 0.177753217344316 0.173524534996899 0.164935102396332 0.177665559182107 0.165964465631732 0.166842846306452 0.175883869620269 0.163539173657129 0.178508295357989 0.168055022074449 3 3 - 21800656 21801108 21800865.273 21800309 21802336 - gene protein_coding_gene FALSE TRUE AT3G58970.1 magnesium transporter CorA-like family protein similar to magnesium transporter CorA-like family protein (MRS2-6) [Arabidopsis thaliana] (TAIR:AT4G28580.1); similar to Mg2+ transporter protein, CorA-like [Medicago truncatula] (GB:ABE89684.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) -0.0669886280585321 -0.749098704181531 0.469682369850129 1 -0.333554077616958 15.9443979179050 -0.0669886280585321 0.062388407358135
AT3G14620_at 9.07591803406338 9.09440181419375 9.1535210352453 8.92118918162634 8.23899025111862 7.89622777163582 7.77655430212733 7.53397014051211 6.95114123543676 7.04193139533678 6.702786896508 6.18233252679323 6.72812290186822 7.3063675013858 5.95647590626166 7.40140887890019 7.39651347170097 7.0335711891565 6.64021735182467 0.199681777501359 0.201550371430468 0.196059069091546 0.197948620829055 0.191298268309874 0.197642790791686 0.191511701266640 0.186078734468518 0.188037116632435 0.190343202444748 0.194549248917808 0.194262657303903 0.188188627169797 0.189644056631787 0.211360693044998 0.186078734468518 0.191007881331448 0.198630015530894 0.193447029311792 3 3 + 4916199 4916813 4916553.455 4914921 4917085 + gene protein_coding_gene FALSE TRUE AT3G14620.1 CYP72A8 (cytochrome P450, family 72, subfamily A, polypeptide 8); oxygen binding putative cytochrome P450 similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14610.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.071477534360733 0.749066695934804 0.469700884261017 1 -0.333577084855381 15.3194519346176 0.071477534360733 0.083111821184772
AT2G45640_at 7.33608363630864 7.88218584861774 7.3025354315599 7.82142450368126 8.03394994373524 7.6012237415801 7.11814971882016 7.92509663098763 7.43575610103634 7.63118989907291 7.86237849507617 7.73431321081345 7.60831683519732 7.74226936427736 7.67057773868571 7.7908932740652 7.3928825059993 7.56051569983599 7.65001028844236 0.178846885915988 0.180066392864252 0.192882404159495 0.189996855001378 0.181898456780621 0.185163120316334 0.180087831669956 0.179795957897269 0.192772327740074 0.182960796835296 0.182789536041851 0.179943351332322 0.181000639488030 0.210796968872857 0.194191730624294 0.188356867644871 0.202614851588957 0.196584867354842 0.179618056973748 2 2|0 -|/ 18807118 18808349 18807847.125 18806684 18808457 - gene protein_coding_gene FALSE TRUE AT2G45640.1 SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo. Identical to Probable histone deacetylase complex subunit SAP18 (Sin3-associated polypeptide, 18 kDa) [Arabidopsis Thaliana] (GB:O64644;GB:Q8L8K8); similar to P18 [Solanum chacoense] (GB:AAQ24533.1); contains InterPro domain Sin3 associated polypeptide p18; (InterPro:IPR010516) 0.111177037049427 0.748812135458278 0.469848145138502 1 -0.333760029317339 15.2488747585835 0.111177037049427 0.205191227985837
AT2G39830_at 3.00638937383217 3.45189079801057 3.51774173883813 3.90521729652967 2.49811565337313 2.48623435062430 2.30619235225687 2.95806605316123 2.44249023316563 2.99489163564570 2.88895649072951 2.63007761992732 2.96585264852525 2.57582714001468 2.5877732290627 2.74737249688239 2.79766745032074 2.78456094450742 2.76618840462443 0.227300725871886 0.223138655317570 0.224339099474520 0.230405443153501 0.222563727037479 0.226762651213488 0.2295066870787 0.225320689793988 0.229909155854688 0.219685777364034 0.219685777364034 0.228497117891084 0.220853538573117 0.219685777364034 0.227341530559577 0.220514826882144 0.224172075183025 0.226153214593294 0.229116520641129 2 2 - 16627047 16628272 16627511.545 16626840 16630869 - gene protein_coding_gene FALSE TRUE AT2G39830.1 zinc ion binding similar to ubiquitin interaction motif-containing protein / LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19270.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06895.1); similar to Os03g0267800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049668.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) 0.0919650967718811 0.748804719677173 0.469852435536169 1 -0.333765357967912 5.75712316556568 0.0919650967718811 0.152218208840907
AT2G21600_at 8.63937478190752 8.88974681680795 9.01117756932357 8.86174358865694 9.46451010761263 8.6771426096422 9.18386242130796 9.20482901135308 9.19466131099703 8.6975519230939 9.41719641191685 9.13693329798926 9.19986053445665 9.20257484463006 8.79035241463408 9.21396623315357 8.4776328525085 8.71905119456292 8.701654857862 0.186407375099636 0.170968115132311 0.187131450708681 0.180032483418812 0.172319605348368 0.193787485712761 0.173385081115941 0.167862690436354 0.179234559940068 0.173535552581733 0.175999594257057 0.167862690436354 0.175159833249989 0.174279117697577 0.178684351822482 0.170740104534093 0.190645976078061 0.183359732573544 0.172991858676211 2 2 + 9250650 9251606 9251009 9249881 9251913 + gene protein_coding_gene FALSE TRUE AT2G21600.1 ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) Key player of retrieval of ER membrane proteins Identical to Protein RER1B (AtRER1B) (RER1B) [Arabidopsis Thaliana] (GB:O48671;GB:Q9SIK0); similar to ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) [Arabidopsis thaliana] (TAIR:AT4G39220.1); similar to Retrieval of early ER protein Rer1 [Medicago truncatula] (GB:ABE85945.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.089631743314274 0.74870176505206 0.469912002455799 1 -0.333839331706628 17.9337076984760 0.089631743314274 0.145345710539692
AT3G22690_at 0.903676451334061 0.893614585386998 0.635592394039834 0.608906179627787 0.810500685865394 1.15897022467930 0.623996018180813 0.727950049057006 0.57252594696609 0.344651871697585 0.470094578988176 0.727722771747993 1.08145473222723 0.722852871919765 0.765278411419396 0.334614533795321 0.665558050407233 0.809003461851528 0.820086796056079 0.223257866547879 0.239420436089033 0.233881526137180 0.227372815953455 0.223908142150895 0.234674632664425 0.228385301684781 0.223257866547879 0.228446112694036 0.227414174304353 0.224758348278724 0.223397617053428 0.233321875277752 0.223257866547879 0.226329864878898 0.229783163692327 0.233365967072413 0.225449845869142 0.225903039431952 3 3|0 -|/ 8020801 8022180 8021682.375 8020764 8024541 - gene protein_coding_gene FALSE TRUE AT3G22690.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G16860.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE88530.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein of unknown function DUF1685; (InterPro:IPR012881); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.067083658350677 0.748575290159827 0.469985184128389 1 -0.333930192494393 1.43348113924698 0.067083658350677 0.0631236558196302
AT4G25250_at 0.81951530554293 0.60031744551109 1.20008884449006 1.13614607466434 0.609583196729693 1.15133407326365 0.7446273943832 0.704116602544809 1.24604029919816 1.48611570902462 1.13825560342647 1.20925906399901 0.97514313154837 0.771213872353901 1.27275620589256 0.975601748641794 1.09029998786621 0.963128937316977 0.879916508050574 0.210697359129635 0.208889460610184 0.209077865299203 0.216947007527280 0.207148269452097 0.207018468226822 0.21286838588291 0.213699929012875 0.21673186445064 0.218054646102563 0.213059440560503 0.21021737515755 0.210397660685544 0.207909991859685 0.21371050277078 0.208890853002282 0.205641414948023 0.208941674996193 0.212740294232974 4 4 + 12934660 12935199 12934881.273 12934572 12935383 + gene protein_coding_gene FALSE TRUE AT4G25250.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT5G51520.1); similar to DC1.2-like [Capsicum annuum] (GB:AAX20046.1); similar to DC1.2 homologue [Nicotiana tabacum] (GB:BAA95794.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0762885035404862 0.748457251028543 0.470053491140867 1 -0.334014980560698 1.99745686262711 0.0762885035404862 0.101980676728262
AT4G29630_at 2.50619379070164 2.00715700272407 2.29548687769683 2.44929433455185 2.00243623866313 2.09498682213496 1.98204551124793 1.84261779158062 2.56073969552346 2.38015708791146 2.94372269568659 2.21922969730113 2.22544106521907 2.63807031166258 2.55380787581377 2.24434380198221 2.81911119576230 2.22685834666947 2.44242373059266 0.208249133663600 0.207715310928034 0.210875297283925 0.205007589628756 0.210260360689133 0.20732821493611 0.210779146066698 0.206479806792776 0.207624580763452 0.206071358572801 0.200694709466273 0.201105847537710 0.200758555522981 0.207635636972222 0.20645752655359 0.206802789015946 0.204441646344209 0.206503773506569 0.200694709466273 4 4 + 14522664 14523210 14522907.364 14522575 14523246 + gene protein_coding_gene FALSE TRUE AT4G29630.1 cytidine deaminase, putative / cytidine aminohydrolase, putative similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29600.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) 0.0743819149755391 0.748453704840812 0.470055543349596 1 -0.334017527619034 4.61999227704829 0.0743819149755391 0.0948964857381822
AT1G26160_at 6.4006982317509 6.36421629158707 6.08552773552998 5.74420877409672 6.62676198578274 5.95928605494258 6.97047260970211 6.62104828277249 5.81902799875513 5.20045876026847 6.03533104979846 5.67047957046439 5.24190926722283 5.71860342753162 6.27971648189726 5.9333612527396 5.24079994633979 4.83938016881761 4.91828725188102 0.184573062062755 0.189318577404464 0.187121113428117 0.188666869631544 0.187842167695288 0.203932752253892 0.199451751526198 0.208243101053856 0.199126048623651 0.202180656886601 0.188253241903547 0.185242509396846 0.189600986768971 0.198862783823828 0.194042301834425 0.184573062062755 0.190026760842414 0.197858640667422 0.204536557578429 1 1|0 -|/ 9044806 9046721 9045914.111 9044428 9046966 - gene protein_coding_gene FALSE TRUE AT1G26160.1 metal-dependent phosphohydrolase HD domain-containing protein similar to metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23820.2); similar to Os02g0179100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046081.1); similar to HD domain containing 2 [Homo sapiens] (GB:AAH66332.1); similar to HDDC2 protein [Homo sapiens] (GB:AAH03357.2); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) -0.0889032038659502 -0.748373430159004 0.47010200049778 1 -0.334075182224466 11.8127969870554 -0.0889032038659502 0.143275366834609
AT3G19980_at 8.19754515118037 8.3143263058945 8.40026417180948 8.34536850828676 8.42036097420989 8.27725542306723 8.43573599272026 8.83692706725773 7.52725483288271 7.7616106486574 8.04839442867598 7.57083265155221 8.13251813616023 7.84506891061025 7.71590683269182 8.06209284430251 7.7909872160174 7.59803857399619 7.57168856470868 0.180780465970424 0.187426501323643 0.182736404524109 0.187606191335819 0.180509806006920 0.18733996368648 0.201111318954156 0.186013492557719 0.209116994473181 0.190050841566531 0.185996794570539 0.19168288214796 0.191990909391318 0.187249085653676 0.187475215321314 0.185440439475363 0.182189531235844 0.185639480467252 0.185591686073079 3 3|0 +|/ 6963545 6964742 6964062.333 6961742 6965114 + gene protein_coding_gene FALSE TRUE AT3G19980.1 ATFYPP3 (SERINE/THREONINE PROTEIN PHOSPHATASE); protein serine/threonine phosphatase Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype. similar to serine/threonine protein phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G50370.1); similar to Ser/Thr protein phosphatase homologous to PPX [Malus x domestica] (GB:CAA87385.1); similar to serine/threonine protein phosphatase 2A [Pisum sativum] (GB:AAM21172.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0699869536240088 0.74832733666677 0.470128677369036 1 -0.334108284833191 16.1363052649702 0.0699869536240088 0.0770209617673666
AT2G26570_at 7.88568146047179 8.01730599752928 8.20325641851268 8.34337732236088 8.24347288732906 8.06160834251979 7.94475811155887 8.012394683895 8.29421595389854 8.56748889151608 8.22750161840825 8.27979520999646 8.22705809745795 8.24615502116141 8.04415090804855 8.32670414586133 8.39932666716321 8.56822947864329 8.3656950789781 0.106720377070047 0.100079764986058 0.108328813151111 0.101604026672715 0.102142499818784 0.101587080104037 0.102512280798403 0.109632471883498 0.113899455897531 0.103355128993354 0.104977930650013 0.104790589975213 0.0987883494918791 0.107264640154188 0.112070405000289 0.101838755118895 0.100716799213054 0.103729006830822 0.102477254329962 2 2 + 11308608 11309060 11308840 11306222 11309269 + gene protein_coding_gene FALSE TRUE AT2G26570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42880.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33390.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88908.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.0643127572642581 0.748254523483835 0.470170820360536 1 -0.334160572799786 16.4384811287589 0.0643127572642581 0.0472690522602979
AT1G60990_at 5.51993031281123 4.82415632590629 5.31751585351653 4.89225581837819 5.49530763714043 5.17596058970802 6.58745721350628 5.89075989318739 5.47643757986026 5.92071593010187 5.77713461194072 6.02801561665507 5.71492074911607 6.19246576809742 6.35367958422002 6.1840227879522 6.52665452707645 5.31925364962128 5.82325995089706 0.22560025295884 0.219875574560088 0.225037013745323 0.220956154265667 0.225681490594278 0.224165280436398 0.226946368902642 0.238113061435268 0.235231850442562 0.228880331242228 0.224766414523813 0.221844794714359 0.226104465594540 0.227435238846790 0.230594538490888 0.222821785743839 0.231286881585207 0.225061934107170 0.223456703487263 1 1 - 22466471 22467582 22466939.727 22465691 22469089 - gene protein_coding_gene FALSE TRUE AT1G60990.1|AT1G60990.2 aminomethyltransferase| similar to aminomethyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G11860.2); similar to COG0354: Predicted aminomethyltransferase related to GcvT [Nostoc punctiforme PCC 73102] (GB:ZP_00106552.1); contains InterPro domain Glycine cleavage T protein (aminomethyl transferase); (InterPro:IPR006222) -0.106717685059250 -0.748035275862229 0.470297731432611 1 -0.334317989494865 11.3389960715799 -0.106717685059250 0.193660249095401
AT3G19890_at 0.742095308713123 0.511538732038288 1.00442507891117 1.01364942560929 0.936594676175004 0.809829113835981 1.09180838623061 0.849362474401438 1.80490448325243 1.00253307495403 0.952846460445434 0.979839468230773 1.00270182322522 1.19098124255889 1.17169364643679 1.13153774907707 1.24784418954298 1.20791035523948 0.551215489593068 0.210674404624937 0.210862014405819 0.211317024428718 0.219084452358046 0.209291359972812 0.212980826185332 0.211536058359708 0.217757689695637 0.215969047080832 0.213781542305034 0.213522334297841 0.216543129454419 0.213393742761451 0.215571180975925 0.215195621719476 0.209291359972812 0.213299535681353 0.211530540274789 0.214755311812456 3 3 - 6915035 6915483 6915269.545 6914916 6916148 - gene protein_coding_gene FALSE TRUE AT3G19890.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G32140.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0667708495992006 0.747630723355477 0.47053196263027 1 -0.334608344125653 1.98502309087824 0.0667708495992006 0.0619359115829172
AT1G46336_at 1.28951259162723 1.29909975047831 1.05221224987483 1.55144584587269 0.658082595177328 1.13433967240058 0.563122598655669 1.24004500385518 1.469197470307 1.23577623738840 1.42081517344208 1.04713676399663 1.19536115008265 0.949762120027647 0.8255585032044 1.13841298713143 1.44034248156139 1.17086488819568 1.32607650577645 0.16424515953885 0.164259462651601 0.163670062605989 0.168008497314651 0.167339415224489 0.169140187654555 0.165053055948497 0.166855313154466 0.163670062605989 0.165322041692057 0.163670062605989 0.163670062605989 0.174080036204024 0.171673230430476 0.167000140453777 0.164796958935481 0.164144422773655 0.165789018805523 0.171509143504307 1 1 - 17232883 17233057 17232969.5 17232851 17233093 - gene protein_coding_gene FALSE TRUE AT1G46336.1 unknown protein -0.0970382706790597 -0.747495051594589 0.470610531480347 1 -0.334705686722567 2.34459011996565 -0.0970382706790597 0.16727958676879
AT3G54580_at 1.14712264407014 1.00350018665742 1.35622243951808 1.24814606886848 0.279503572358113 1.15243453572371 0.625704297719225 1.12905796664573 0.725512516050724 1.07868154540838 0.294937585150482 0.745869902471636 0.77407113898541 0.555130124268758 0.816350177584693 0.5180995313484 0.818322819466996 0.796780787484994 0.89214783456368 0.170433222440652 0.169592931435948 0.170968253187015 0.171228147000416 0.172369535650296 0.175014162614129 0.170075970833077 0.181194133788706 0.169592931435948 0.172602071811276 0.172332457974645 0.169592931435948 0.179326969583040 0.176783311977759 0.176092052853083 0.170403158780662 0.174653979594452 0.178169507060317 0.182246703984553 3 3 - 20212280 20212439 20212379.273 20211666 20214760 - gene protein_coding_gene FALSE TRUE AT3G54580.1 proline-rich extensin-like family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G23720.1); similar to ATHRGP1 (ATHRGP1), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT3G54590.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G28550.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.100552496659227 -0.747397781245063 0.470666866789359 1 -0.334775467111551 1.77457440912149 -0.100552496659227 0.177132357618795
AT1G51840_at 0.977074108895537 0.829772992728375 0.907693863831278 1.16248890616268 0.757857398181289 1.30390985557377 1.06511907534284 0.9763894440935 1.02597850565464 1.26902709324876 1.35758319858904 1.26159403551047 0.90301745118685 1.08239239986583 1.47055125720016 1.03373606029625 1.47625883382482 1.02881639982563 1.05501264878171 0.186328485869082 0.179239276696579 0.186245744026387 0.182238948813903 0.183086113888749 0.178790126086879 0.187382471918254 0.184932132865548 0.180559355380465 0.190438109249436 0.180880308029848 0.180165183442057 0.198629613343733 0.199217055014707 0.184866514024269 0.182923367973874 0.183814369299584 0.196620753909408 0.189378649636479 1 1 - 19253127 19253782 19253477.182 19253118 19254378 - gene protein_coding_gene FALSE TRUE AT1G51840.1 protein kinase-related similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to Tyrosine protein kinase [Medicago truncatula] (GB:ABE90332.1) 0.0779847779906022 0.747336396494262 0.47070242070555 1 -0.334819499491054 2.15674643248403 0.0779847779906022 0.108441134788118
AT3G50640_at 1.37367982040326 1.70185428209633 1.7201955198032 2.12492487622636 1.37317185508446 1.95662431529466 1.89128503441669 1.87635495533964 1.42131421569195 1.41600904631068 1.25491225122088 1.20149440597697 1.65340691562115 1.18992219050112 1.89925524510587 1.46267920387438 1.63216681251266 1.70533134771909 1.39404422688822 0.217138038344261 0.213304510536718 0.217987927912519 0.216142388133303 0.214279142904064 0.213007324033005 0.210152651052523 0.221248471180938 0.216584391677003 0.217076509444084 0.215629508498595 0.220337375552007 0.217999346306918 0.21398964535465 0.213314639866553 0.211166092364571 0.21399033848464 0.218002873381186 0.217268354737030 3 3 - 18815268 18815594 18815413.091 18814784 18815644 - gene protein_coding_gene FALSE TRUE AT3G50640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66800.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80518.1) 0.0861879177372111 0.747196183356948 0.470783638208249 1 -0.334920064741683 3.20743727043147 0.0861879177372111 0.1353973330418
AT1G54870_at 0.585695380195659 0.721974640265685 0.428154111368421 0.555596161922246 0.92293710895604 0.57393589018396 0.924407723803166 0.361560210456239 0.894118428053506 0.919747317204247 0.347987717221843 0.668429230504842 0.816198324981374 0.691249934118039 0.239284447173271 0.547556166229382 1.06459409519672 0.890639823152612 0.562639361522688 0.228216841107618 0.22700405101159 0.22700405101159 0.231652396481122 0.22700405101159 0.228033418960490 0.235216173447383 0.22700405101159 0.227510343523291 0.234037011682113 0.233503045893152 0.22700405101159 0.231496629512556 0.230787249223245 0.230716496490604 0.230453434102090 0.22700405101159 0.229309325603862 0.22700405101159 1 1|0 +|/ 20463303 20463932 20463646.4 20462673 20464314 + gene protein_coding_gene FALSE TRUE AT1G54870.1 oxidoreductase Identical to Glucose and ribitol dehydrogenase homolog 1 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9FZ42;GB:Q42157;GB:Q42225;GB:Q9C7L3); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G05260.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD32398.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.0810897860885371 -0.747190319325398 0.47078703510104 1 -0.334924270240737 1.35948807151846 -0.0810897860885371 0.11907024690499
AT4G24730_at 5.73987338535280 5.83265046302353 6.00489191997248 5.51007743548974 5.65592337282796 5.30765677959662 5.38577139827914 5.15191369453564 5.99820924893005 5.39687406024895 5.52882999416813 5.65471358141037 5.22232225301074 5.26503209289016 5.49862231053421 5.56395522614253 4.92293894540311 5.49716320809856 5.54016943012826 0.2216389561947 0.218645846448004 0.222234666968058 0.226148545766751 0.220087776823795 0.220766868212226 0.219400752723765 0.218282551835285 0.223693305632300 0.225862871401358 0.223976091512820 0.217755850442522 0.217755850442522 0.224984059306792 0.229162130267151 0.218332501533191 0.225870999723695 0.220198721114652 0.217755850442522 4 4 - 12752735 12753273 12753007.818 12752587 12754106 - gene protein_coding_gene FALSE TRUE AT4G24730.1|AT4G24730.2 calcineurin-like phosphoesterase family protein similar to PREDICTED: hypothetical protein [Macaca mulatta] (GB:XP_001114048.1); similar to Os08g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062482.1); similar to Os07g0688000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060698.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.0794009516523043 -0.747148940193681 0.470811005478707 1 -0.334953945213343 11.0932355300812 -0.0794009516523043 0.113404030487100
AT2G41260_at 0.236969401614840 0.664646340893992 0.839545347729588 0.530436248785206 0.639333765611867 0.498352240430114 0.140267256251780 0.464342207286126 0.609308902085414 0.518998659000618 0.283594657551969 0.219448925844111 0.217892520351118 0.975086940498021 0.424904005042493 0.77401385289402 0.38209133443693 0.887175777539192 0.714403409794805 0.189571412052628 0.194579266810370 0.194427932235215 0.195142070080402 0.191654756684096 0.193438706245824 0.189571412052628 0.191503958242865 0.193432809383250 0.193924177509434 0.196363901391968 0.203254101578627 0.213517764234066 0.189761032337032 0.196858316657258 0.191913815513490 0.201022586963919 0.205952719938523 0.198060534173288 2 2 + 17214510 17214546 17214534.364 17213588 17214776 + gene protein_coding_gene FALSE TRUE AT2G41260.1|AT2G41260.2 M17 Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis. similar to M10 [Arabidopsis thaliana] (TAIR:AT2G41280.1); similar to Glycine-rich cell wall structural protein precursor (GB:P17816); similar to Os03g0351300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050116.1)|similar to M10 [Arabidopsis thaliana] (TAIR:AT2G41280.1); similar to GRound-Like (grd related) family member (grl-23) [Caenorhabditis elegans] (GB:NP_506146.1) 0.0783248053018145 0.746570561136283 0.471146133295205 1 -0.335368574776543 1.06911809710711 0.0783248053018145 0.109907610151481
AT2G03110_at 1.93894778139162 1.77091955239158 2.6194476071524 2.41021928478078 1.94954911601528 2.08568139281569 2.25795412024370 1.80601474314155 2.19611786730036 2.1711975223756 1.76205073966924 2.19706240422122 1.64297392819102 1.85859825599599 1.96483169453926 1.81956883391895 2.09530108719122 2.10342376697981 1.94877550174516 0.175586834213790 0.17292290662469 0.183062832714698 0.175159923537480 0.172585715969057 0.185089704765769 0.178568780844786 0.172585715969057 0.176529496694564 0.181457841930552 0.176493288472085 0.178658952023322 0.17877289403993 0.177646795669171 0.179834957561546 0.173921987775257 0.180218603409607 0.175412439665033 0.174447162522476 2 2 + 935432 936347 935661.9 935335 936638 + gene protein_coding_gene FALSE TRUE AT2G03110.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G14170.2); similar to KH domain containing protein [Solanum demissum] (GB:AAU90323.1); similar to KH domain containing protein, putative [Solanum demissum] (GB:AAW28569.2); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.0739390046317774 0.746459373756344 0.471210575374961 1 -0.335448250075349 4.1227616843976 0.0739390046317774 0.0939594673920196
AT4G10060_at 10.4068486405223 10.5044142595983 10.6581153911745 10.6895376058893 10.8618630858344 10.7424748614730 11.0376576374911 10.8736644874515 11.0964262310641 11.3757278952217 11.2445069237498 11.1522856174420 11.1074724992698 10.9709352763342 11.0885399705018 11.3138189293760 10.9642642640238 11.0879205786748 11.3518341960007 0.0770928971844376 0.0774349318024937 0.0821879363055893 0.0786136350968396 0.0777332881100319 0.0806670725906489 0.0828162117102871 0.0784021216145845 0.0832606468057648 0.0796058878431824 0.0770928971844376 0.0770928971844376 0.078493395190602 0.0891747908143772 0.0813788988787073 0.0780200598663907 0.0938395031565575 0.0835090650785503 0.0812635653944782 4 4 + 6294594 6295222 6294945.455 6288850 6295398 + gene protein_coding_gene FALSE TRUE AT4G10060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49900.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33700.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24180.2); similar to unknown protein [Oryza sativa] (GB:AAL31035.1); similar to Os11g0242100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067588.1); similar to At5g49900 [Oryza sativa (japonica cultivar-group)] (GB:AAX95400.1); contains InterPro domain Protein of unknown function DUF608; (InterPro:IPR006775) -0.0630466434234664 -0.746401279205289 0.471244248075915 1 -0.335489875581025 21.9172623869378 -0.0630466434234664 0.0393309154755021
AT1G02900_at 1.55306375177844 1.64916033077995 1.59794716599684 1.36603486091514 1.61357159030314 1.65297556161441 1.91278492425058 1.26235407692292 1.97747404309644 1.85644398885143 2.22651562489503 2.21506423913422 1.75677142651162 2.02441473338957 2.25827938741069 2.12506594754307 2.45134878272327 1.76662223714323 1.87611633464859 0.212667836023650 0.206630570935785 0.209209811523999 0.222263401811600 0.207964590533759 0.212541519303787 0.205486439128249 0.208608740124886 0.205872284111025 0.212010595476451 0.212771233560881 0.219097386216942 0.210199001647711 0.214800416747893 0.211100539037720 0.210290880921900 0.210636940912492 0.205395409242950 0.207972586761543 1 1 - 653980 654305 654147.182 653765 654343 - gene protein_coding_gene FALSE TRUE AT1G02900.1 RALFL1 (RALF-LIKE 1) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL22 (RALF-LIKE 22) [Arabidopsis thaliana] (TAIR:AT3G05490.1); similar to RALF precursor [Nicotiana tabacum] (GB:AAL26478.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.081478516126382 0.745832509173728 0.471573998054641 1 -0.335897253544397 3.57916407592484 0.081478516126382 0.120845055573583
AT2G02350_at 3.33340171087850 3.02077158363938 3.1241205108787 2.40734385974234 2.55310263639669 2.24592634738574 1.85178794155277 2.20583168823603 2.8308514347411 2.79463847767799 2.69934401642052 2.50129513176413 2.72572759571826 2.67499651933793 2.57130082120671 2.61897542800448 2.48652829882448 2.97253416147974 2.84342704328951 0.236775240724980 0.238228101520490 0.238372161548206 0.246284139315318 0.237632949089697 0.231001298129189 0.229908711855115 0.247311670603256 0.233828576398890 0.230529112012257 0.229908711855115 0.240902675288478 0.231943122451957 0.229908711855115 0.236753573836087 0.230866775032344 0.234034236494627 0.242785918367613 0.235755591296766 2 2 - 617978 618565 618259.545 617799 619090 - gene protein_coding_gene FALSE TRUE AT2G02350.1 SKIP3 (SKP1 INTERACTING PARTNER 3) encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber. similar to ATPP2-B10 (Phloem protein 2-B10) [Arabidopsis thaliana] (TAIR:AT2G02360.1); similar to Os02g0812600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048480.1); similar to F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22385.1) -0.093479732225402 -0.745646019575312 0.47168214886179 1 -0.336030765019539 5.3324408174208 -0.093479732225402 0.157775239235134
AT3G24000_at 2.46696182250917 2.72006886823221 2.65615065061893 2.27106327704124 2.29894187765359 2.20924278708444 2.69035594687762 2.56543615375613 2.6493814781054 2.51128646190893 2.42194509357265 2.34611913924115 2.51853082774503 2.26477526722499 2.62135808326402 2.70174567592716 2.88580628474744 2.68701916538575 2.17964441075895 0.198859988228143 0.198576773621991 0.200904340478333 0.201488170406447 0.200447461810116 0.200725021981977 0.202992945853713 0.209961792841196 0.220285620119176 0.200018302620690 0.200369976308342 0.198576773621991 0.202802943006862 0.201358689727972 0.198836518575073 0.198576773621991 0.206871726685687 0.199820148602911 0.200789043574771 3 3 + 8674119 8674623 8674344.818 8672781 8674682 + gene protein_coding_gene FALSE TRUE AT3G24000.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23330.1); similar to Selenium binding protein [Brachypodium sylvaticum] (GB:CAJ26357.1); similar to hypothetical protein MtrDRAFT_AC149805g4v1 [Medicago truncatula] (GB:ABE88408.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABB47711.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0713571955983993 -0.745397102986758 0.471826527262126 1 -0.336208922590084 4.98611928583648 -0.0713571955983993 0.0840707934203507
AT3G58180_at 5.66903725106876 6.00543054685969 6.30096465781995 5.95448543096188 6.13206987039628 6.12602662017566 6.16006461147431 6.20493402401457 5.83246393868898 5.42081070776235 5.92102143621603 5.7775993702271 5.40506827501615 5.43090062443135 5.85618011617396 5.76664356190658 5.87159924723488 5.66392462641021 5.80919996149963 0.189734411858160 0.187161704931178 0.18846568019838 0.190464198776456 0.196140629581245 0.187104372810384 0.193925094286574 0.189974282755703 0.196975154621772 0.194251966753356 0.187104372810384 0.190620377761930 0.196738337396295 0.201673331694883 0.195543944958032 0.187104372810384 0.196402058857723 0.196811340762156 0.187159233625948 3 3|0 +|/ 21555964 21556758 21556244.714 21555074 21557156 + gene protein_coding_gene FALSE TRUE AT3G58180.1 PBS lyase HEAT-like repeat-containing protein Identical to Deoxyhypusine hydroxylase (EC 1.14.99.29) (Deoxyhypusine monooxygenase) [Arabidopsis Thaliana] (GB:Q94JW0;GB:Q9M2J8); similar to PBS lyase HEAT-like repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62530.1); similar to Deoxyhypusine hydroxylase-B (Deoxyhypusine monooxygenase-B) (GB:Q2QLW3); similar to Os12g0163300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066229.1); similar to Os12g0626100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067322.1); contains InterPro domain PBS lyase HEAT-like repeat; (InterPro:IPR004155); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0713228288512469 0.745373183922554 0.471840402436534 1 -0.336226039424914 11.7686809731892 0.0713228288512469 0.0839374150727125
AT3G29160_at 8.1742925106347 8.0315082134407 7.86644553143732 7.98701007708472 8.37735776792233 7.76955825775852 8.24932610340653 8.14050718755795 7.41090724231687 7.75824948168023 8.02973261336108 8.06644313245582 7.8631721084644 7.95579542310657 7.46458230193938 8.10064284987823 8.333709477238 7.78600341106736 7.76236719526547 0.173081556281654 0.168782083855608 0.165971993089202 0.165971993089202 0.165971993089202 0.170844685911869 0.173450028047421 0.174355072731293 0.194785150732399 0.175475932251858 0.173027831491644 0.165971993089202 0.171643239961425 0.169055538561631 0.176760628928177 0.166195545098324 0.183976112664851 0.185952008962177 0.175091488620154 3 0|3 /|- 11130135 11131152 11130692.7 11129862 11133313 - gene protein_coding_gene FALSE TRUE AT3G29160.1|AT3G29160.2|AT3G29160.3 AKIN11 (Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE 1.2); protein kinase encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1. Identical to SNF1-related protein kinase catalytic subunit alpha KIN11 (EC 2.7.11.1) (AKIN11) (AKIN alpha1) (KIN11) [Arabidopsis Thaliana] (GB:P92958;GB:P92968); similar to AKIN10 (Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE 1.1), protein kinase [Arabidopsis thaliana] (TAIR:AT3G01090.2); similar to SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3), kinase [Arabidopsis thaliana] (TAIR:AT5G39440.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); similar to SNF1 [Lycopersicon esculentum] (GB:AAF66639.1); similar to SNF1-related protein kinase [Cucumis sativus] (GB:CAA71142.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Kinase-associated, C-terminal; (InterPro:IPR001772); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|Identical to SNF1-related protein kinase catalytic subunit alpha KIN11 (EC 2.7.11.1) (AKIN11) (AKIN alpha1) (KIN11) [Arabidopsis Thaliana] (GB:P92958;GB:P92968); similar to AKIN10 (Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE 1.1), protein kinase [Arabidopsis thaliana] (TAIR:AT3G01090.2); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.0786766315293712 0.745158584495466 0.471964900595022 1 -0.336379587934261 15.8714264417102 0.0786766315293712 0.111641715704762
AT2G17390_at 10.4868395052644 10.7946128281632 10.8072919121773 10.9723443556172 10.7918650858047 10.7358835517842 10.7069736989510 10.9608958703669 10.5553601932756 10.7020837321053 10.6402143792896 10.5947707321012 10.6340305242937 10.7168485750510 10.5450670752753 10.8456343410662 10.6621245910021 10.7401840862374 10.6123640796848 0.0724162492525828 0.0705370934845172 0.0716085504536121 0.0705370934845172 0.0725877152480626 0.0746022287033535 0.0738577786442952 0.0743699301129241 0.0813629169555428 0.0725423496571636 0.0723578431695182 0.0718783037882723 0.0718618169552849 0.0718387583576412 0.0768919803234807 0.0714656198985333 0.077773633976217 0.0746573154249045 0.0730602163476307 2 2|0 +|/ 7563663 7564801 7564280.5 7562712 7565120 + gene protein_coding_gene FALSE TRUE AT2G17390.1 ankyrin repeat family protein similar to AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2), protein binding [Arabidopsis thaliana] (TAIR:AT4G35450.1); similar to ankyrin domain protein [Nicotiana tabacum] (GB:AAN63819.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0693028518385632 0.74501225030548 0.472049807078093 1 -0.336484269127733 21.4299026625468 0.0693028518385632 0.0753487893138193
AT1G72940_at 5.59102570292042 5.82245239953398 6.91709874036841 6.86041916789252 6.39346665333952 5.87376655361409 6.275288585947 5.86422009857535 5.479003447347 5.45948169203653 4.71174120212112 4.43455639439524 4.55818235339779 4.64096762943835 4.64613363335999 6.29526198642147 5.32972310015129 5.30859067745717 5.41212118070946 0.249244502204243 0.24957800317889 0.256009370813262 0.261953374272318 0.250817482786545 0.255158581596017 0.249701516406258 0.260181650610383 0.252649467487911 0.248546707348135 0.252948331542791 0.248582312036999 0.254412674721492 0.250985787726384 0.250711109492458 0.250540636580547 0.259981549825013 0.256037088613764 0.248546707348135 1 1 + 27446716 27447074 27446884.091 27445899 27447517 + gene protein_coding_gene FALSE TRUE AT1G72940.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72950.1); similar to resistance gene analog PU3 [Helianthus annuus] (GB:AAL07535.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.0816917987272943 0.744970694061468 0.47207392072583 1 -0.336513993322782 11.4201406021691 0.0816917987272943 0.121857567399303
AT4G27060_at 6.45099398542272 6.75260567401739 5.74881046119883 5.87499630522063 6.68759692506955 6.13058823532376 6.10528236573668 6.49131218123543 6.0413810156494 5.66357073208458 6.16466132840943 6.56086509451109 6.22445661393678 6.40509955318903 6.31427942903908 6.18256170889467 5.43924115301819 5.84557450081267 6.20820573284723 0.205077790094074 0.205008991624101 0.201316519422757 0.198749411587666 0.200033939517104 0.219032136943055 0.202134282919266 0.201958001837179 0.223987425609889 0.204452396531892 0.205958532401256 0.203367296531628 0.201810631520708 0.201946174507959 0.205100818513589 0.198749411587666 0.218178283427723 0.225162063634678 0.199361706425803 4 4 - 13581650 13582187 13581910.545 13581407 13585161 - gene protein_coding_gene FALSE TRUE AT4G27060.1 TOR1 (TORTIFOLIA 1) Encodes a novel, plant-specific microtubule-associated protein that regulates the orientation of cortical microtubules and the direction of organ growth. The protein plays a role in control of microtubule dependent anisotropic cell elongation. spr2 mutant rosette leaves, cauline leaves, roots, petioles and petals curl in an anticlockwise direction. Identical to Microtubule-associated protein TORTIFOLIA1 (Microtubule-associated protein SPIRAL2) (Protein CONVOLUTA) (TOR1) [Arabidopsis Thaliana] (GB:Q9T041;GB:Q68VK4;GB:Q84MA0); similar to binding [Arabidopsis thaliana] (TAIR:AT1G50890.1); similar to Os07g0520400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059802.1); similar to potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigena] (GB:CAD45375.1); similar to putative potyviral helper component protease-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19987.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain HEAT; (InterPro:IPR000357) -0.084255320350283 -0.744744102329965 0.472205417695787 1 -0.336676042887058 12.3368457247798 -0.084255320350283 0.130213736890540
AT1G33220_at 1.70915716079315 1.53150501545909 1.54573499845326 1.58836650545772 1.43648374141601 1.41196783059601 1.27601248987150 1.74099992808467 1.28967570766425 1.34896722285378 1.31690623366333 1.58312410529829 1.58727653012024 1.34886320210965 1.54480018959780 1.30938086422976 1.33445419088059 1.77736861830293 1.14943842694895 0.220805241608526 0.221631969634441 0.217674132448342 0.226214330577108 0.219165281264586 0.219613032341487 0.218440105696355 0.223105143494759 0.219792597061184 0.223093730280015 0.221449111346138 0.217445746773943 0.222744483131646 0.217920428607589 0.217546520860934 0.217445746773943 0.228278812059184 0.21911566346126 0.224545143649623 1 1 + 12045283 12045817 12045530.545 12044852 12045859 + gene protein_coding_gene FALSE TRUE AT1G33220.1 beta-1,3-glucanase, putative similar to BETAG4 ("beta-1,3-glucanase 4"), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G20330.1); similar to Os01g0801500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044540.1); similar to endo-1,3-beta-glucanase [Hordeum vulgare] (GB:AAC39322.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.0718987881908227 0.744735727758837 0.472210278115171 1 -0.336682031207485 2.89901122256525 0.0718987881908227 0.0865605654668372
AT1G05490_at 1.15015107433498 1.09095619025989 1.30080591155027 1.32034648236427 1.17166124210956 1.37681516477592 0.740765338032399 1.34800573070440 1.46485271633180 1.34155429347195 1.06241523488107 1.48581460942587 1.21084391177692 1.23531896061926 1.12151568506757 1.35679165500812 1.29635955747119 1.37163175073215 1.15478338539907 0.140433479793552 0.137138571172582 0.138917596621263 0.136895936036899 0.137579143048765 0.138750832558036 0.137503841158002 0.139305060142798 0.140160331047358 0.137896583115419 0.138901919575075 0.140645612589776 0.143790126069817 0.140279299054591 0.138189594627671 0.138199346309393 0.140317718529185 0.142147811412874 0.141149554003726 1 1 - 1618839 1621528 1620133.19 1618601 1623451 - gene protein_coding_gene FALSE TRUE AT1G05490.1 CHR31 (chromatin remodeling 31); ATP binding / ATP-dependent helicase/ DNA binding / helicase/ nucleic acid binding similar to CHR40 (chromatin remodeling 40), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G24340.1); similar to SNF2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26561.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0785636195444553 0.744628940837412 0.472272257688677 1 -0.336758384970571 2.48143000127832 0.0785636195444553 0.111444367764770
AT3G26450_at 10.3436641800456 10.4370506067727 10.2940485167716 10.4629878946282 10.7768574976003 10.5530104706528 11.5729990217367 11.6161956206537 10.7529522760129 11.1971575069595 11.7944142379878 11.5286015210961 11.5625914636459 11.5566882703278 11.5211125678867 11.4003474137368 11.4012869073056 11.6372080683817 10.9003992752981 0.103330383330903 0.101274717990160 0.108954229400015 0.106200273262207 0.102106890952876 0.103818752164005 0.10200116594098 0.103929012432415 0.105060846189217 0.100611022787502 0.100076110658170 0.100581341800272 0.100294910405964 0.104950951450070 0.100902559090033 0.100598668907366 0.105291508233594 0.102695322785464 0.101997840850024 3 3|0 -|/ 9682968 9684500 9684012.1 9682535 9684605 - gene protein_coding_gene FALSE TRUE AT3G26450.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT3G26460.1); similar to ripening-induced protein [Fragaria vesca] (GB:CAA04770.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.064680178908453 0.744459470874812 0.472370629271446 1 -0.336879537630783 22.0073272223008 0.064680178908453 0.0516952765402704
AT2G20380_at 2.03762578593777 2.31491628198196 2.18146996169085 2.35739798008154 1.98750480759651 2.32209404828012 2.48230520211959 1.88314191429656 2.50644904133224 2.38896175972945 2.25576776709343 2.39546832125177 2.01224213339718 1.92483770527293 2.33788245262675 2.57436331665367 2.23215135100585 2.64797763679846 2.60311616480853 0.192288373783886 0.194468810634428 0.191361501657793 0.195543724574418 0.194459623285980 0.19469298813999 0.19493172258028 0.192739829301516 0.189818281365862 0.206093222996716 0.195325696078568 0.193340174607948 0.191263873790452 0.19376119119092 0.194531861063724 0.194244486062974 0.203438854106051 0.203660396897274 0.189818281365862 2 2 - 8801905 8802465 8802210.636 8801899 8803061 - gene protein_coding_gene FALSE TRUE AT2G20380.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G48990.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.0846516248913082 -0.7442196440503 0.472509862670681 1 -0.337050945611627 4.59435465981607 -0.0846516248913082 0.131656650412158
AT2G21040_at 2.38974747800944 2.25103671309818 2.33856396658853 2.26528464173002 2.10424012628421 2.45343024465941 2.4624912491981 2.51114999735473 2.53243850081023 2.59264728918383 2.95159822414924 2.65180282122361 2.92073004138029 2.72890123336249 3.01329552059991 2.62282704611807 2.86832989478118 3.31633652005754 2.78349655760229 0.190712391017252 0.18836037316875 0.191360503546009 0.189298675089459 0.190506558385284 0.18920386638707 0.185731767002146 0.185731767002146 0.187903999896606 0.185731767002146 0.189013525216128 0.185731767002146 0.199624415979291 0.188732685725613 0.191433675236487 0.186731164712464 0.191176237290365 0.19333491531914 0.190617844704065 2 0|2 /|+ 9033630 9034350 9034130 9033238 9034391 + gene protein_coding_gene FALSE TRUE AT2G21040.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G21010.1); similar to protein kinase C conserved re (GB:AAW22620.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0674034661220083 0.744097940023268 0.47258052880343 1 -0.337137910459664 5.10720394140257 0.0674034661220083 0.066780256200997
AT2G33130_at 2.12485460155387 2.35196851628236 2.63603407982271 2.64564760045903 1.8908498115924 2.67961170934120 2.09790636471165 2.22933371863760 2.5922295932673 2.72411134045186 2.26167278510734 2.38635691599129 2.10204525163430 2.20361201183998 2.26134596901110 2.02198853479329 2.64125026814978 2.63336886461347 2.94283399432461 0.186579207452977 0.187281343562039 0.191521164189057 0.190896978469264 0.185175315673389 0.191317340159611 0.190393915183656 0.199308740078158 0.190938173402502 0.192484900855332 0.188104303890596 0.191088757477171 0.192960249569545 0.185175315673389 0.190399968944175 0.186772209596955 0.185175315673389 0.194093855669566 0.189417850693197 2 2 - 14053603 14053871 14053740.091 14053598 14053909 - gene protein_coding_gene FALSE TRUE AT2G33130.1 RALFL18 (RALF-LIKE 18) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL14 (RALF-LIKE 14) [Arabidopsis thaliana] (TAIR:AT2G20660.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.0885416170989434 -0.743695216341626 0.472814413378214 1 -0.337425589915106 4.86553249254535 -0.0885416170989434 0.143863666596225
AT4G37790_at 7.63931165293926 8.36010162554296 8.32006252011709 8.54545483574205 9.18560775470854 8.3932302187139 8.63816087758104 8.53517512013835 7.6233282797603 7.70038773739316 7.44584830256136 8.14068235711941 8.00411330122825 7.9483663717312 6.80544046187088 8.60968681042838 7.43805946756118 6.6739332891439 7.90079422382209 0.238446058659812 0.228241674516243 0.243601535645683 0.233347178234007 0.234129405116492 0.241513180663956 0.233836329800039 0.230349703247825 0.244302091179294 0.234918495204609 0.228471355331019 0.232033856766181 0.235473483814677 0.252826285775112 0.248848378144953 0.227461276678626 0.254000479516829 0.248430751521424 0.235167912106609 4 4 + 17768655 17769240 17769100 17768130 17769600 + gene protein_coding_gene FALSE TRUE AT4G37790.1 HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;GB:Q546G6); similar to HAT9 (homeobox-leucine zipper protein 9), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G22800.1); similar to homeobox protein (GB:AAA56908.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.104832197408524 0.743621458927926 0.472857256396129 1 -0.337478262269655 16.1395229301174 0.104832197408524 0.190266351293329
AT4G18060_at 6.61490959147554 7.0742949484821 6.52916437862943 6.4534509407317 7.3077168426402 6.56026058345837 7.25167473784261 6.88883548471965 6.7811123061834 6.71256415947913 7.44673496878018 7.56011868355442 7.08870463463524 7.17334691499492 7.47240723396019 7.45710746108398 6.53327660458396 7.19667341410703 6.92138613742421 0.203150537194966 0.189455204479277 0.195674848104050 0.196831374956517 0.194914559353245 0.205041419697751 0.204899960775710 0.197781411331886 0.200573930433754 0.204613782807505 0.190813064762321 0.192779065355059 0.200944067169533 0.196122043098139 0.198469479930385 0.189455204479277 0.211388842417929 0.194549751766473 0.189455204479277 4 0|4 /|- 10027687 10028700 10028207.889 10027492 10029911 - gene protein_coding_gene FALSE TRUE AT4G18060.1 SH3 domain-containing protein 3 (SH3P3) similar to SH3 domain-containing protein 2 (SH3P2) [Arabidopsis thaliana] (TAIR:AT4G34660.1); similar to SH3; tRNA-binding arm [Medicago truncatula] (GB:ABE92790.1); contains InterPro domain Src homology-3; (InterPro:IPR001452); contains InterPro domain Neutrophil cytosol factor 2; (InterPro:IPR000108) 0.0956224337509335 0.743236190942686 0.473081084341653 1 -0.337753317472585 13.8580719920765 0.0956224337509335 0.164821336824891
AT3G58580_at 5.58366768634182 5.63836230348137 5.37182816819186 4.93420635932908 5.55704612124596 5.42332596440972 5.5695387594725 5.76402427416234 5.4687531081113 5.2884025409425 5.75595949900965 5.91363686230150 6.12316181757062 5.77855221767077 5.61851637115283 5.86283724319656 6.00677350874753 5.39742710495409 5.28177421309888 0.229502115826432 0.230037456125466 0.228369369793447 0.230792067091966 0.222824127330319 0.224180207457803 0.224165922361139 0.222824127330319 0.235059342409576 0.235468900949572 0.222824127330319 0.232327458789211 0.222824127330319 0.227051830539863 0.234274543761592 0.222824127330319 0.234987084613860 0.228732674460968 0.231601374528608 3 0|3 /|- 21671854 21672568 21672213.111 21671575 21675067 - gene protein_coding_gene FALSE TRUE AT3G58580.1 hydrolase similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G58560.1); similar to Endonuclease/Exonuclease/phosphatase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94166.1); similar to Os10g0412100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064587.1); similar to Os03g0166800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049077.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.0717507607270982 0.74319455669119 0.473105276451846 1 -0.33778303385656 11.0569589706425 0.0717507607270982 0.0865636734548286
AT3G46280_at 1.50570010925004 1.38749362659123 1.26011417747276 1.31802845395359 1.43907874519668 1.23120715593598 1.85612464326272 1.37330291261769 1.97565429286372 1.42623758303252 1.49720773015802 1.60670775813434 1.68184726144558 1.44615755896886 1.63004457159698 2.21640641488059 1.94150741887231 2.08913068966516 1.67471657083215 0.208309017170418 0.21654091591041 0.207699102122286 0.208906955085715 0.206191748187607 0.214795639980665 0.205590614078105 0.208244099109774 0.221244984061610 0.222273973045651 0.208774551193306 0.208467581815588 0.203787286678113 0.206673512982083 0.212697422125015 0.203787286678113 0.206950619759038 0.211541876226184 0.203787286678113 3 3 - 17017859 17018750 17018199.364 17016468 17019409 - gene protein_coding_gene FALSE TRUE AT3G46280.1 protein kinase-related similar to receptor protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G46270.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); contains domain Immunoglobulin (SSF48726); contains domain no description (G3D.2.60.40.10) -0.0735624149507847 -0.743131626713944 0.473141844190202 1 -0.337827947201294 3.14929572355577 -0.0735624149507847 0.0937781063066974
AT4G13660_at 2.44942033148093 2.43550310879401 2.24177385871502 2.35235076276931 2.82268748485895 2.64008298286787 2.02666384406683 1.94758309789029 2.43780826288313 2.40466051522870 2.51415037139115 2.01413246333862 2.52932478010654 1.86863054673090 2.06130074550675 1.7255837438282 2.25757611080513 2.29735723996299 2.1549942117864 0.187238730987772 0.180378335634421 0.188343376053830 0.194453683866276 0.183677106161770 0.183572055181465 0.187075613594817 0.191134164849920 0.183174086877785 0.191837026260843 0.186904381521107 0.184519232547895 0.180378335634421 0.182434017219984 0.185373585810210 0.180378335634421 0.18592600785446 0.186339067901113 0.184848744740967 4 4 + 7947255 7948180 7947712.818 7946151 7948372 + gene protein_coding_gene FALSE TRUE AT4G13660.1 pinoresinol-lariciresinol reductase, putative encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. similar to pinoresinol-lariciresinol reductase, putative [Arabidopsis thaliana] (TAIR:AT1G32100.1); similar to TPA: isoflavone reductase-like protein 1 [Vitis vinifera] (GB:CAI56330.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) 0.0627252568270733 0.742387164718263 0.473574575597692 1 -0.338359013676077 4.6100055156845 0.0627252568270733 0.0394697853073904
ATCG00380_at 11.8591344359022 12.5634834031442 11.9641181502950 11.9418314960201 11.8290953059923 11.4308177324263 12.1680738893706 12.0424434647582 13.3488787523523 13.4803766748192 13.7482604784339 14.0252827691088 13.4272017762274 13.6817958091312 13.6524888108418 13.5850039870236 13.0274507964755 13.1397140675407 13.2041251612147 0.089714183287296 0.0878881803924629 0.0965647423257868 0.0930964229184846 0.0880154723281619 0.100220071434434 0.0888641025590688 0.0896777694085981 0.0940604509358605 0.0870636965350067 0.0870636965350067 0.0870636965350067 0.089696374671454 0.0887951847370021 0.0875648877443852 0.0872726254911042 0.0929425337669721 0.089931832235592 0.0871851741214695 C C - 45317 45712 45457.909 45223 45828 - gene protein_coding_gene FALSE TRUE ATCG00380.1 Chloroplast encoded ribosomal protein S4 Identical to Chloroplast 30S ribosomal protein S4 (rps4) [Arabidopsis Thaliana] (GB:P56799); similar to Chloroplast 30S ribosomal protein S4 [Brassica oleracea] (GB:ABD64913.1); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4, bacterial and organelle form; (InterPro:IPR005709) -0.0876892556956337 -0.742347290358249 0.473597760274569 1 -0.338387444832467 25.4150547387269 -0.0876892556956337 0.141758305585848
AT1G24735_at 2.41147945128258 1.99455158212458 2.21444248645678 2.05016416421257 2.35470315095183 1.83662790175527 2.72858960501247 2.58309366186057 3.36696624463883 2.63051306457261 3.01973940100311 3.57952544971277 2.64651578334704 3.32323783942721 3.11185785442802 3.16759861078816 2.53455329445176 3.32133513582136 2.8075150383235 0.208966449604159 0.20873275649178 0.213683353647865 0.215334636544699 0.20873275649178 0.217117767411563 0.210014053650445 0.20873275649178 0.20873275649178 0.223733512330625 0.210674045305532 0.213387760988567 0.209246841763857 0.211409791720988 0.209058592660357 0.214122064275226 0.219846369618232 0.214528163493564 0.212854607478662 1 1 + 8758717 8759394 8759030.455 8758685 8759434 + gene protein_coding_gene FALSE TRUE AT1G24735.1 caffeoyl-CoA 3-O-methyltransferase, putative similar to CCoAMT (caffeoyl-CoA 3-O-methyltransferase), caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] (TAIR:AT1G67980.1); similar to S-adenosyl-L-methionine:trans-caffeoyl-Coenzyme A 3-O-methyltransferase (GB:AAA62426.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) -0.081198421974244 -0.742325447816999 0.473610460774773 1 -0.338403018388244 5.28322826894079 -0.081198421974244 0.121186123189844
AT4G29330_at 6.50286580302904 6.96252915454546 6.90856340537217 6.2503666008198 7.48062729230107 6.0466689690999 6.54213317354054 5.94330018649807 6.05543693935 5.8781000481759 6.40129256856392 6.56219917486027 6.36170144231712 6.48751959723109 5.82717189612926 5.95413577895689 5.06679728326696 5.27187506076305 5.69935713135041 0.260369297243947 0.251220553924754 0.250220774701126 0.256053670148533 0.255815919441366 0.254328457309133 0.249917354090247 0.256108161866557 0.258529990290676 0.255268570406151 0.247840087327047 0.248898169726733 0.253428008122372 0.253254663251675 0.255439951283296 0.254724170611592 0.275646619158411 0.269505933710851 0.247840087327047 4 4|0 +|/ 14446031 14446929 14446485.5 14444825 14447121 + gene protein_coding_gene FALSE TRUE AT4G29330.1 Der1-like family protein / degradation in the ER-like family protein Identical to Derlin-1 (AtDerlin1-1) (DER1) [Arabidopsis Thaliana] (GB:Q8VZU9;GB:Q9M0E8); similar to Der1-like family protein / degradation in the ER-like family protein [Arabidopsis thaliana] (TAIR:AT4G04860.1); similar to Derlin-1 (DER1-like protein 1) (OsDerlin 1-1) (18 kDa cold-induced protein) (GB:Q06397); contains InterPro domain Der1-like; (InterPro:IPR007599) 0.148902357398630 0.742224945125763 0.473668901533792 1 -0.338474670704025 12.5142408097607 0.148902357398630 0.302689914415534
AT3G05860_at 2.46276212643004 2.02728381984866 2.12242347937928 2.14544529726485 1.53376538173870 1.79684464744478 1.86488654720205 2.18492069646829 2.12919040951416 1.86708914017283 2.27779529625921 2.40289320382814 2.11312330715265 2.37341263342449 2.23810471273732 1.43525634986350 2.04384276804596 1.90845090620220 2.0523758955404 0.186982530275414 0.189033653848465 0.187591642205027 0.193276865508929 0.191751247962848 0.192660070575106 0.195916834587262 0.189133998436312 0.19407469851613 0.187637945324393 0.190114205400616 0.183411207581176 0.199350602800331 0.196560177173051 0.196234887736566 0.191223361364427 0.193879661339197 0.190675984645637 0.184425638837462 3 3 - 1751420 1752184 1751855.182 1751412 1752361 - gene protein_coding_gene FALSE TRUE AT3G05860.1|AT3G05860.2 MADS-box protein (AGL45) similar to MADS-box protein-related [Arabidopsis thaliana] (TAIR:AT2G28700.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE94129.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.07622609029182 -0.742152376017098 0.473711102163922 1 -0.338526402665447 4.07495568893791 -0.07622609029182 0.104092619989634
AT3G61410_at 1.20440277507014 0.914469242425869 1.04117169007173 1.28040147107849 1.42741455147941 1.07995739224028 1.11826601036664 1.35730002037124 0.947139912343371 1.32621830748375 1.12281891696147 1.02249918098551 1.68971680171004 1.21901014808994 1.46497816798125 1.26213882004951 1.27843302497276 1.26622410513323 1.32779042010419 0.257398556529849 0.261182216321130 0.257054579877856 0.269112937033529 0.262701177774759 0.263541497548082 0.261448225514133 0.267253167084822 0.257796660988159 0.257861536467212 0.268722626988349 0.262349669820166 0.263189754417722 0.255833980066897 0.262168524650105 0.25799661322808 0.260378771323723 0.256412621038350 0.255833980066897 3 3 + 22732453 22733346 22732969.3 22732013 22733626 + gene protein_coding_gene FALSE TRUE AT3G61410.1 similar to protein kinase family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45910.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains domain no description (G3D.3.40.50.1420); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402) 0.0744856399586833 0.741904906128737 0.473855029440982 1 -0.338702781138608 2.42347803199426 0.0744856399586833 0.097765329208194
AT2G47550_at 0.82801838423844 0.967958322443722 0.946609118522265 0.883110999718797 0.751225023892406 1.04163149206462 1.20533271982529 0.426173938674245 1.23379510649994 0.603861906942449 1.09565081498598 1.28439035506268 1.00924199553989 1.50268144288088 0.977443992339866 1.15092856463149 1.44788158791310 1.15119685812659 1.38141450060756 0.198605200437925 0.198428437318673 0.202667266754549 0.204320761228134 0.195458183079491 0.198980029307539 0.197018571377036 0.198845937165943 0.204341095461269 0.195458183079491 0.215068079690089 0.195458183079491 0.195458183079491 0.196906306398597 0.203651335286385 0.197636033921065 0.197654522471019 0.201772991937636 0.203460560784099 2 2 + 19518117 19518629 19518419 19516050 19518862 + gene protein_coding_gene FALSE TRUE AT2G47550.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G02810.1); similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G02330.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.0890882153362525 0.741422808754768 0.474135493787547 1 -0.339046233532907 2.01898289464833 0.0890882153362525 0.14633504013133
AT4G32800_at 3.11587992794498 3.03898188486493 1.64517906701740 1.89539773961152 1.98336682782891 2.52886250435478 2.62987729921857 2.09622438859794 3.11508848769305 2.83942261569415 4.57288564349486 4.40620274197255 2.59974674247455 4.13707616411468 4.27067962649088 3.54596684154183 2.80680260597501 3.34813752489789 3.57845561308657 0.187950778213668 0.184767977141537 0.192003380776653 0.198605070224849 0.184976941053794 0.195281477110474 0.194062646595403 0.185204323934920 0.195168621609562 0.195891499960546 0.201663346561699 0.184767977141537 0.189243596863297 0.191636386492081 0.196961631692533 0.190907619269588 0.200947336612465 0.187162401312155 0.191378242502334 4 4 + 15819950 15820367 15820104.727 15819528 15820875 + gene protein_coding_gene FALSE TRUE AT4G32800.1 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT2G25820.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE81266.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.0868788381205496 -0.741400286955765 0.474148598588504 1 -0.339062273459925 5.81101760919398 -0.0868788381205496 0.139614863064262
AT1G11100_at 1.98036340619383 1.58453700199217 1.92418103250049 1.88872936963988 1.47969735002387 2.19905187792006 1.69149857649916 1.33655968723449 2.01734543908790 2.04622676971700 2.11720156202702 1.82767455385217 1.81183393448771 2.05415764370914 1.91651423011729 1.90128781038762 2.09068100330641 1.84434279621783 1.89505380787384 0.215845706073479 0.215246138726082 0.23524028994332 0.215246138726082 0.218396985565484 0.222700428340761 0.220570988083619 0.216777069042559 0.218179644819904 0.225051685806407 0.218255970205101 0.220202082482544 0.227959629884830 0.215633730893990 0.222174580791244 0.225058658388621 0.215246138726082 0.233435678170598 0.219473700776878 1 1|0 -|/ 3703957 3704628 3704262 3703691 3709302 - gene protein_coding_gene FALSE TRUE AT1G11100.1 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G50410.1); similar to EDA16 (embryo sac development arrest 16), ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G61140.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20010.1); similar to Os01g0779400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044433.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD52846.1); similar to H0323C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68165.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0919641295390324 0.741340756429884 0.474183238821135 1 -0.339104668737461 3.72641246974519 0.0919641295390324 0.154919006204905
AFFX-ThrX-3_at 5.77135528076144 5.79078683905304 6.97819641936964 5.85296202351505 7.68769951612569 5.9299447196488 7.8315928072659 5.92068244876376 8.49544171001277 8.73785741973406 8.16162806045533 8.28802120894522 7.8414428405417 7.96971537417881 7.82707518763714 8.18118329623825 7.81082088179086 7.53671500835772 8.84209703284234 0.127394131465630 0.129514272147452 0.125134722259238 0.124082220425015 0.118171174175925 0.124849678199244 0.120582748051188 0.122316488386704 0.124396828887912 0.121678906209951 0.118045263583385 0.119927495524999 0.122476604129932 0.121822017714660 0.121916056251775 0.117689366965670 0.122875494120337 0.123717650990337 0.119697336834355 NA NA NA NA NA FALSE FALSE -0.228063581445584 -0.741009006243011 0.474376310121365 1 -0.339340872152887 14.7923394833785 -0.228063581445584 0.489711381488399
AT2G25300_at 5.63688019173757 6.14003327944327 5.62587420446533 5.32062676704812 6.03446911826087 5.03646741021874 5.4444957008439 4.71159051557683 4.37957768554183 4.64696548230188 4.47028813788524 4.99825462628519 4.7217642761706 4.86518129215454 4.88181535572802 5.0351039763478 4.52868924218734 4.57342006129179 4.58100505279227 0.212089808316302 0.203649246512270 0.201423247723171 0.208717626368382 0.207823669263788 0.220475263596178 0.206301378176204 0.203694645142766 0.207018762132325 0.203283750833121 0.199711454054908 0.201108437353056 0.20569664438102 0.210170733517591 0.199711454054908 0.199711454054908 0.229331919562880 0.207031169651025 0.215882498985104 2 2|0 -|/ 10779358 10780524 10779771.125 10778773 10781373 - gene protein_coding_gene FALSE TRUE AT2G25300.1 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G32120.1); similar to Os06g0176200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056954.1); similar to beta 1,3-glycosyltransferase-like protein II [Oryza sativa] (GB:CAD44838.2); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.122287333612765 0.740690631390506 0.474561643669205 1 -0.339567463296933 10.1413866623918 0.122287333612765 0.237248820833613
AT1G48010_at 0.536129773402777 0.609209289234014 0.7798317713811 0.657265554012266 0.523041493762207 0.457128920383683 0.231945033702572 0.478638886856910 0.559353147521638 0.975051876555125 0.705608984137248 0.261317299462550 0.663437024713652 0.888580598951784 0.722188364120111 0.683902106279844 0.742896504392209 1.10293328061009 0.665990297850292 0.19499583567497 0.192055060558093 0.194025082419355 0.196108875521885 0.194323136819867 0.199785395018535 0.197838490739572 0.191470402183836 0.194811130548351 0.194506192555924 0.196289379341024 0.193385840397445 0.196729303180914 0.210082358921722 0.197949688342930 0.192921699334557 0.201612435439396 0.205406657339338 0.195548942386356 1 1|0 -|/ 17715177 17716215 17715434.8 17715160 17716329 - gene protein_coding_gene FALSE TRUE AT1G48010.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G50340.1); similar to pectinmethylesterase inhibitor [Actinidia deliciosa] (GB:BAC54966.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Signal recognition particle, 9 kDa and 14 kDa protein; (InterPro:IPR009018) 0.0641145510550818 0.739931844990945 0.475003534392992 1 -0.340107148463225 1.26156040416317 0.0641145510550818 0.0506212011064132
AT1G29870_at 1.00785280433813 1.10151021963807 1.14957184580724 1.97979290915066 1.10464561999455 1.01730836014296 1.10460015265126 1.28222895463510 0.98603279832298 1.08686364386865 0.665944355476179 0.760292806483604 0.999850756662134 1.05115660105132 1.38274951443728 1.40342475726122 1.32701910645392 1.18145769188397 1.24496898086012 0.232293483642725 0.223530065256244 0.219204843333068 0.245847528438037 0.219204843333068 0.22142355832348 0.22511211225807 0.234526005962704 0.245704816680547 0.221547532648641 0.235794778087381 0.224874561731798 0.229609888205977 0.226241903400954 0.229559650595605 0.231490834554797 0.219429024980936 0.226994848860279 0.22226207692726 1 1 - 10456952 10457624 10457325.333 10456886 10458766 - gene protein_coding_gene FALSE TRUE AT1G29870.1 tRNA synthetase class II (G, H, P and S) family protein Identical to Putative glycyl-tRNA synthetase, cytoplasmic (EC 6.1.1.14) (Glycine-- tRNA ligase) (GlyRS) [Arabidopsis Thaliana] (GB:Q9FXG2); similar to glycyl-tRNA synthetase / glycine--tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G29880.1); similar to Os08g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062369.1); similar to OSJNBa0039C07.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE05155.2); similar to H0209H04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66534.1); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Glycyl-tRNA synthetase, alpha2 dimer; (InterPro:IPR002315) 0.0896567293273323 0.739923744465294 0.475008253248495 1 -0.340112907267954 2.31965990316022 0.0896567293273323 0.148587208782523
AT3G19650_at 5.53119174964396 5.55330104062827 5.70629934738788 5.63788772908332 5.91469078810077 5.87455924831622 6.16914921906003 5.37141469030073 5.32512850057504 5.68196175929423 5.08763257189805 5.43468004511352 5.0327581652728 5.3299325085217 5.41571598679945 5.12771985637577 5.22633190676012 5.26368200713388 5.61216230093577 0.230754079988884 0.221047257049868 0.220228662830421 0.219009127822688 0.216200821252444 0.215035950266674 0.221968279631075 0.225814439179759 0.225749541829578 0.216299940355838 0.226800671610125 0.215723421881040 0.225252191309539 0.214621726649545 0.222471459861422 0.222303166464517 0.240053056997358 0.220840021216016 0.21924334252046 3 0|3 /|+ 6824729 6825114 6824902.6 6823515 6825267 + gene protein_coding_gene FALSE TRUE AT3G19650.1 cyclin-related similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G23900.2); similar to PREDICTED: similar to CARS-Cyp [Gallus gallus] (GB:XP_422008.1); similar to Os03g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049304.1) -0.0864245596517373 -0.739814797058422 0.475071721995647 1 -0.340190354381772 11.1095904688582 -0.0864245596517373 0.138785081197237
AT2G33420_at 2.03863261570580 2.21529677953090 2.29245868119101 2.3076143073286 1.7386938142316 2.17434774574854 1.75941871961643 2.2993242829598 2.96964780821217 2.12004120581820 2.30785160477767 2.02698224480481 1.97327344641358 1.67217667291232 2.54281497109745 2.17865998460207 2.55452929264343 2.18107031003287 2.08997143476870 0.185072759832816 0.185434181212441 0.183187422716864 0.183431578874299 0.183187422716864 0.189648354685974 0.190956769424647 0.194313390481639 0.200117781569155 0.186221725881786 0.187409370634079 0.183800456212644 0.1882567036319 0.186462847786906 0.186154646105149 0.186483137741796 0.183187422716864 0.195072575656369 0.199531216064949 2 2 + 14168782 14169323 14169058 14165781 14169603 + gene protein_coding_gene FALSE TRUE AT2G33420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25800.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20010.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04470.1); similar to hypothetical protein LOC_Os03g04560 [Oryza sativa (japonica cultivar-group)] (GB:ABF93881.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP54227.2); similar to Protein of unknown function (DUF810) [Medicago truncatula] (GB:ABE87967.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528) -0.0817198980087303 -0.739529090208096 0.475238189546203 1 -0.340393405359136 4.38966835104419 -0.0817198980087303 0.12391635787195
AT3G31410_at 1.68510080757013 1.52165817298908 2.00504914524439 1.92197568543738 1.72011548601490 1.83982696890312 1.61043975036133 1.73596288249398 2.1175038933388 2.17103811073555 2.27519749341089 1.61884420256779 2.02699507243899 1.68159603047051 2.07977553825099 2.12395634981737 1.88250430992326 2.13291553019936 1.96673454482234 0.152867165860713 0.153633454173840 0.157014377152375 0.157748455370991 0.152867165860713 0.159820965221816 0.153597402650098 0.152867165860713 0.159371033931611 0.156467030004301 0.162277556844833 0.157342508823532 0.162272647181604 0.159548266516999 0.161021183018315 0.156846918099959 0.152867165860713 0.160768132812102 0.161728688391114 3 3|0 -|/ 12783308 12785286 12784879.2 12782958 12786060 - gene protein_coding_gene FALSE TRUE AT3G31410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32140.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) 0.0630411504828252 0.739494224860794 0.475258506400064 1 -0.340418179237382 3.78642373680202 0.0630411504828252 0.0436775676932586
AT1G17960_at 2.90868258986602 3.23696827143852 3.24778006495439 3.01969523765861 2.46506917055138 3.14946511068957 2.75716610199314 3.17220077192135 2.9427455355607 3.01238631676118 3.0197723879235 2.78063240365025 2.69457321160217 3.15178701403624 2.57771352806936 2.64338503942313 3.17023178353226 2.88344878146682 3.04585346199233 0.19587618571006 0.195179625694098 0.202065321793158 0.201227472039562 0.221735776444934 0.206828026020576 0.218691956828989 0.198870750081565 0.206140395778047 0.200389245532914 0.198776960819752 0.200158413005245 0.197904121447155 0.197710628677044 0.200054954643315 0.199132407415932 0.220510478308091 0.199044523301732 0.204536802261932 1 1|0 -|/ 6181008 6182059 6181484.778 6180889 6183799 - gene protein_coding_gene FALSE TRUE AT1G17960.1 threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative Identical to Probable threonyl-tRNA synthetase, cytoplasmic (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) [Arabidopsis Thaliana] (GB:Q8GZ45;GB:Q9LMT4); similar to threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) [Arabidopsis thaliana] (TAIR:AT5G26830.1); similar to Os08g0295300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061475.1); similar to threonyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:CAC79651.1); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Threonyl-tRNA synthetase, class IIa; (InterPro:IPR002320); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.0916937286165196 -0.739410233834829 0.475307452172835 1 -0.340477855495099 5.92738914329297 -0.0916937286165196 0.154827913618480
AT3G24250_at 3.36519139389180 3.50488429924727 3.69864414778267 3.40987356944946 3.06087236600845 3.52828217839147 3.44652236454194 3.41490800442546 3.61041994447776 3.41377285168370 3.29386838004259 3.2579119084885 3.73531463672137 3.28258525750667 3.80045799886678 3.51730909009186 3.56745198376657 3.53258331668931 3.89172706469338 0.222260025765384 0.222224177532125 0.218681988238358 0.217271414835657 0.21998056483581 0.217188576736562 0.215096246040878 0.217821148205989 0.221442290197183 0.217241776896695 0.217928758735480 0.220698659419307 0.218857982636109 0.220416196944113 0.220412106939167 0.219063456882039 0.215403825238053 0.215601491498823 0.214938922391597 3 3 + 8786779 8787125 8786926.818 8786696 8787398 + gene protein_coding_gene FALSE TRUE AT3G24250.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G29020.1); similar to glycine-rich protein [Gossypium hirsutum] (GB:ABK54298.1) -0.0743315411075868 -0.739072397565003 0.475504358189138 1 -0.34071782929375 6.99718492803731 -0.0743315411075868 0.098256950622769
AT1G22170_at 1.86912751626427 2.35625953493013 1.96549346015535 1.6529669731559 1.71725432843500 2.04339476687668 1.99912726293615 2.6214317935735 1.91312604347253 2.09406026157038 2.53624983645908 2.33710141483620 2.37336076632899 1.89614514685141 2.65249930465615 1.61513644057200 1.76725806095739 2.26248449516141 1.98812547170717 0.203352340229254 0.203273599061721 0.203665412253364 0.206000853434364 0.202199196462864 0.207676403892920 0.212007913813446 0.204511443673647 0.209450777256330 0.200429033505261 0.200542713439744 0.205085867172742 0.200763910129269 0.196785482693357 0.206390109051131 0.205077367596910 0.201005751007475 0.205249301163408 0.209025093485496 1 1|0 +|/ 7827109 7827855 7827507.3 7826278 7828315 + gene protein_coding_gene FALSE TRUE AT1G22170.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT1G78050.1); similar to Os02g0751800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048137.1); similar to putative phosphoglycerate mutase [Oryza sativa (japonica cultivar-group)] (GB:BAD38179.1); contains InterPro domain Phosphoglycerate/bisphosphoglycerate mutase; (InterPro:IPR001345); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain Phosphoglycerate mutase 1; (InterPro:IPR005952) -0.0925584852295723 -0.738973368057392 0.475562086683927 1 -0.340788153854799 4.11736530061313 -0.0925584852295723 0.157527367132357
AT2G19200_at 1.16361033804293 1.21205538032485 1.45533254407417 0.79897645778186 1.30124843487460 1.26346669903479 1.42914342482527 0.948628454869912 1.49380742736872 1.80133554562369 1.41410593447760 1.36999958457397 1.61239700696554 1.52347132541728 1.33692627286919 1.75467266117807 1.37097655960427 1.41822884062375 1.70175262744315 0.191799213994267 0.187172863373216 0.192862397985209 0.202224246019052 0.193901301338423 0.194788302487171 0.192341727191033 0.188001696901139 0.188140748241583 0.197204988967005 0.193906794679180 0.195277504742423 0.196481332653192 0.188829172628758 0.187394513069799 0.188381047827368 0.192662148301015 0.191505770932301 0.1876555509067 2 2|0 +|/ 8340628 8341679 8341289.8 8340300 8341703 + gene protein_coding_gene FALSE TRUE AT2G19200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11700.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) -0.0870689795862628 -0.738712440190258 0.475714213624229 1 -0.340973408015143 2.76692228674133 -0.0870689795862628 0.141171916060801
AT2G04675_at 0.89768369075491 1.15864935102192 1.34492838533693 1.65432059188994 1.05208944043547 1.08518273712722 0.999810801751393 0.998021261758382 1.52042908493768 1.66406601826960 0.941211606865475 1.06889283070717 1.11517753429921 1.13198168663963 0.821060478569282 1.19421642339331 1.04846257780609 1.20414572062973 1.22994595957517 0.184821413885294 0.182951004113943 0.178193797471833 0.183071256187794 0.17913716933262 0.184822038027079 0.178193797471833 0.180824268541207 0.186305685823959 0.186840086514975 0.179989136958400 0.183417320134071 0.192042947279259 0.180597982598571 0.178193797471833 0.191122575613877 0.184597735885564 0.188267943846863 0.180747138339331 2 2 - 1637640 1637801 1637714.364 1637480 1638644 - gene protein_coding_gene FALSE TRUE AT2G04675.1 contains domain Scorpion toxin-like (SSF57095) -0.0676238672606697 -0.738638632361378 0.47575725081643 1 -0.341025799614569 2.41739776332179 -0.0676238672606697 0.0702791549379628
AT4G39870_at 5.82873026235354 6.01509081605051 5.97220322059595 5.14355893462141 6.53889606326533 6.37566619334914 5.86723909666354 5.30495295696751 5.06005001230517 5.14309605576357 5.03753085327679 5.03114947885498 5.09814889216238 5.07261077255008 4.71419225947219 5.07345797115707 5.6898775399335 4.94001429718692 5.20476785901272 0.220027760467219 0.220336615543285 0.236717965921536 0.227281129960036 0.235171634999863 0.240871405740492 0.22828272346439 0.223956645548672 0.241540630724055 0.221303193926715 0.224498621365203 0.219856319376434 0.223668602123176 0.218058266363875 0.219068135530403 0.217680729457038 0.222801680677367 0.233120473011399 0.22280611816579 4 4|0 +|/ 18503084 18504242 18503614.8 18501889 18504460 + gene protein_coding_gene FALSE TRUE AT4G39870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05590.2); similar to Os06g0221100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057175.1); similar to Os02g0754000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048151.1); similar to TLD, putative [Medicago truncatula] (GB:ABE87991.1); contains InterPro domain TLDc; (InterPro:IPR006571) 0.0998646344981344 0.738585807037149 0.475788054651514 1 -0.341063294151529 10.9898392265341 0.0998646344981344 0.178522582406476
AT1G48930_at 1.65776418877275 1.05893006899891 1.33848509456516 1.58059417337951 1.07360744015836 1.09269349771100 1.01353566680622 1.39850487416936 1.24971905878924 1.36429482887718 1.58052457486752 1.26695547119772 1.71613367964029 1.62629687090632 1.27828765580249 1.14153100322039 1.82524291172825 1.45707318740275 1.31180765547755 0.200412560665862 0.198704462554607 0.200455548111814 0.199125100988806 0.195653240884987 0.197704550875414 0.199250837173798 0.201457827668302 0.202498132177848 0.199788599528905 0.198595851001648 0.200660983190723 0.206906991741505 0.207683994428462 0.201874395420799 0.196548008884094 0.208299482602457 0.204670278223081 0.202662847692763 1 1|0 -|/ 18105465 18106145 18105780 18105311 18108329 - gene protein_coding_gene FALSE TRUE AT1G48930.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 5 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 5) [Arabidopsis Thaliana] (GB:Q9M995); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT4G11050.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G64390.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAB43938.1); similar to H0103C06.3 [Oryza sativa (indica cultivar-group)] (GB:CAJ86099.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAC94006.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Carbohydrate-binding; (InterPro:IPR008965); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) 0.0835299200322138 0.73845463214511 0.4758645515834 1 -0.341156389503202 2.67432080076701 0.0835299200322138 0.130169398730538
AT2G01310_at 1.45373069600329 1.83051710085874 1.88041965080226 1.98955234817853 1.83558034857263 2.18850450065176 1.40329640892842 1.71755345030836 2.01395615649424 2.13054748200689 1.75067834202338 1.75666105337662 1.78864146492182 1.55971794714085 1.81028315752949 1.84440287660633 2.23696058440835 1.83889499435336 1.98345742709734 0.196148313790095 0.195166431463694 0.195744322076639 0.202433337069880 0.198801398129916 0.195275928391505 0.194918650210339 0.195300470425098 0.193533358772037 0.206609529504308 0.196309544587051 0.195932770149818 0.193491679577913 0.195890297886517 0.192808159519009 0.194540360666259 0.199109352553065 0.193851921514857 0.197646193903784 2 2 - 152480 152612 152550.273 152480 152641 - gene protein_coding_gene FALSE TRUE AT2G01310.1 similar to CYCA3,2, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT1G47210.2); contains domain CYCLIN (PTHR10177:SF6); contains domain CYCLINS (PTHR10177) 0.0764330810193956 0.738263856903992 0.475975819252849 1 -0.341291756981849 3.72036118357692 0.0764330810193956 0.106283024102227
AT1G03750_at 4.32716158824691 3.87495940481492 3.66408242273307 3.90899319638103 4.04782656635714 3.28218701262532 3.33284173827447 3.50186506714198 3.25961936152487 3.81789163801028 3.49523827421826 3.79940856461993 3.43109868638944 3.91810600776542 3.10128744139722 3.65126341283108 2.80862836660239 3.48981004108641 3.77229235564457 0.226186570728124 0.220887043051393 0.225858138406905 0.212673406860399 0.209808884198806 0.212936889616286 0.212738306473792 0.213843048002903 0.213629263816840 0.207464880029641 0.209010218078240 0.207464880029641 0.213711109032814 0.207464880029641 0.212247925945433 0.207464880029641 0.215277307135279 0.208262716064826 0.207862067926957 1 1|0 +|/ 940308 941007 940672.2 937919 941161 + gene protein_coding_gene FALSE TRUE AT1G03750.1 CHR9/SNF2/SWI2 (chromatin remodeling 9); helicase similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G19210.1); similar to Os05g0247900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055021.1); similar to hypothetical protein CIMG_04482 [Coccidioides immitis RS] (GB:XP_001245041.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain SEC-C motif; (InterPro:IPR004027) -0.0940903345624509 -0.73820147883747 0.476012204144924 1 -0.341336011480302 7.28171773345036 -0.0940903345624509 0.162269632442736
AT1G11190_at 1.78992257208579 1.62419270740449 1.55942313196483 1.76288698759142 2.02764610566772 1.54064156018613 1.83015779474980 1.94444081267261 2.28966436468943 2.26933759269112 2.06848483690574 2.66058528861278 2.27062004058729 2.51360016760569 2.59199711062594 2.12614651500063 1.83756272186279 2.25810197721937 2.53472137840453 0.186964400056299 0.184644631842681 0.195356211140690 0.184723299587281 0.184644631842681 0.186589104968848 0.195376234188939 0.185710432233567 0.188879346556397 0.190909105439254 0.188125242764385 0.186602557295823 0.192654564276346 0.196630967880657 0.192140493781242 0.185866321112783 0.194677508129528 0.202698419738576 0.186036082602354 1 1|0 -|/ 3750344 3751930 3751188.222 3750066 3752780 - gene protein_coding_gene FALSE TRUE AT1G11190.1 BFN1 (BIFUNCTIONAL NUCLEASE I); nucleic acid binding bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence similar to bifunctional nuclease, putative [Arabidopsis thaliana] (TAIR:AT4G21585.1); similar to putative endonuclease precursor [Lycopersicon esculentum] (GB:CAJ87709.1); contains InterPro domain Phospholipase C/P1 nuclease; (InterPro:IPR008947); contains InterPro domain S1/P1 nuclease; (InterPro:IPR003154) -0.0741080691674093 -0.738167585985446 0.47603197444878 1 -0.341360055563215 4.08764484782246 -0.0741080691674093 0.0977564281126289
AT3G44190_at 6.91550184396936 7.19144312041831 6.64041979730686 6.87164884093165 6.99357347186439 6.61318485341395 6.90590693238266 6.87225292846857 6.43635079750637 6.8712649025819 7.33341371175413 7.33754239095548 6.95609550265399 7.05912066755526 6.52795074017578 7.05334909529807 6.56133298178549 7.1952750143264 6.69289693525845 0.173159064454194 0.170958901451831 0.171187448466678 0.172268803443843 0.171964517732683 0.172409478153831 0.167462481890048 0.167413536772730 0.190444426439159 0.170262028074911 0.175736159399033 0.168356312524449 0.175574356754264 0.180913858011053 0.170700487503792 0.170866328866301 0.166332808714524 0.171184489575204 0.168014060129071 3 3|0 -|/ 15912991 15913498 15913218.6 15912784 15914595 - gene protein_coding_gene FALSE TRUE AT3G44190.1 pyridine nucleotide-disulphide oxidoreductase family protein similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G22140.1); similar to Putative pyridine nucleotide-disulphide oxidoreductase, identical [Solanum demissum] (GB:AAU90296.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.0723015012584958 0.737984380998122 0.47613885008274 1 -0.341490006698708 13.7104152526838 0.0723015012584958 0.0908229640168129
AT4G12220_at 0.227280202276024 0.142957428530060 0.275422685964535 0.0130292770816257 0.333954474119606 0.441591715614058 -0.127906842322849 0.524799615460285 0.220998659843951 0.0730337145435653 0.153954695088906 0.0502947174531835 -0.110101262598711 0.301048902899728 0.413095190778349 0.312462693716595 -0.0721946880032178 0.584481367415982 0.0522083581680564 0.200039763833184 0.202378741248538 0.197916675819065 0.206966742407275 0.199198438984798 0.197916675819065 0.204617939941087 0.197916675819065 0.206293431751137 0.211560092949126 0.197916675819065 0.197916675819065 0.20662941288737 0.205580182673696 0.204533347500018 0.197916675819065 0.202554565482203 0.213632589966646 0.199323632410583 4 4 - 7283358 7283692 7283506.636 7283242 7283733 - gene protein_coding_gene FALSE TRUE AT4G12220.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G12210.1) 0.081466780892202 0.736959535210779 0.476736987789016 1 -0.342216417310293 0.388662959396606 0.081466780892202 0.124017802195056
AT4G18420_at 1.93634492013858 1.91390460233193 2.43931513472691 2.00729242323983 1.36053427787276 2.29486319881110 1.65727197868004 2.23892167180642 2.34818820286259 2.22542652942696 2.19989701390860 2.30314894748832 2.22735107331455 1.73740528550989 1.99909400238825 1.72264602899552 2.17859670288520 1.64491102524543 2.35307965137496 0.220834416532884 0.228283238190327 0.222198976503147 0.227687356704391 0.216832665186904 0.216832665186904 0.216832665186904 0.222216829251029 0.230280673015843 0.224213805395202 0.23377862462111 0.228034129573446 0.223757770143125 0.24610832877246 0.224354794951848 0.222417113436291 0.240739902413472 0.224607900853576 0.231310265097496 4 4 - 10174431 10174864 10174694.25 10174422 10174971 - gene protein_coding_gene FALSE TRUE AT4G18420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42810.1); similar to hypothetical protein 26.t00076 [Brassica oleracea] (GB:ABD65021.1) -0.109188201248897 -0.736789532171516 0.476836253272509 1 -0.342336827824724 4.13632071987852 -0.109188201248897 0.20464649414242
AT4G39790_at 1.24394841610460 1.27392198691396 1.56887579867254 1.16849143721227 0.984053872655404 1.44704298002181 1.48744865274136 1.33732445160676 1.68507881222586 1.59063462180716 1.47468234645560 1.53681506617564 1.74412209912068 1.31817457934884 1.65915433769101 1.11436095056711 1.65613917168929 1.7173020442398 1.63893915327442 0.207559817066979 0.205478683502154 0.201217137840633 0.204656018703981 0.206516148039436 0.20266029355654 0.207587238105244 0.200001231952997 0.203297106791762 0.198937220548911 0.201540395872343 0.198999662235490 0.207049905780585 0.201387389629895 0.207938257036423 0.200847589720689 0.201101952708307 0.205945160177360 0.198937220548911 4 0|4 /|- 18462437 18462799 18462634.5 18462184 18464818 - gene protein_coding_gene FALSE TRUE AT4G39790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27090.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44340.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) -0.0770842796963265 -0.736684503533333 0.476897586395047 1 -0.342411205515821 2.89679412624783 -0.0770842796963265 0.109189435125065
AT3G08750_at 1.06658963781507 0.908045203964381 1.40763033170407 0.714552581536903 1.17623456383777 0.888139866960874 0.858736692037687 0.885618276649913 0.827404458493537 1.33412621159343 0.996485147840545 0.843563191260766 0.799527599268075 1.05808605215371 1.01849404649735 0.888298949530827 1.29266857349046 0.885058642408285 0.602660930226011 0.199354061438858 0.216797335021567 0.204399391412172 0.202416033157521 0.19897849114096 0.202772448493299 0.204467303082811 0.200393385128611 0.217403111728408 0.203070722403850 0.205297307595717 0.207741375231803 0.205339907563136 0.199487829687312 0.200243181070940 0.200163316558507 0.204417030735094 0.204504811207600 0.201113629247668 3 3 - 2656730 2657227 2656978.1 2656722 2657831 - gene protein_coding_gene FALSE TRUE AT3G08750.1 F-box family protein similar to F-box family protein (FBX15) [Arabidopsis thaliana] (TAIR:AT4G04690.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0841337292975337 0.73640688533494 0.477059729666392 1 -0.342607759395303 1.93527838201862 0.0841337292975337 0.132837269369479
AT3G45360_at 2.07914187241995 1.44809196153083 2.10439019134123 1.99070274265157 2.05832171410763 1.90490840044432 2.16393279817820 1.98725442828118 2.52628296984479 1.89819273805465 2.08119816737859 1.7754039001064 2.12460550552924 2.07338970073749 2.19860828549070 1.97676699561877 2.18233813045581 2.46466763525198 1.71153364073791 0.159010251813139 0.161014929753764 0.169903473092453 0.162152014305331 0.159010251813139 0.162249202638046 0.166292306546143 0.163735967566167 0.169303441049984 0.167930486283946 0.171170024029834 0.166790720622615 0.164832253860044 0.162316090531197 0.170771900763983 0.159010251813139 0.162085179816274 0.167138086119387 0.166412391856267 3 3 + 16652855 16652864 16652859.625 16652604 16652984 + gene protein_coding_gene FALSE TRUE AT3G45360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04394.1) 0.0796306687794957 0.736335519866764 0.477101416332546 1 -0.342658275449535 4.04457238342782 0.0796306687794957 0.118121657228337
AT3G16630_at 8.60913987494616 8.65859723388926 8.31680416929913 8.49100110028733 8.8710113334767 8.80469907862468 8.5931736132992 8.62248628583368 8.75912442146647 8.7674499858609 9.25241168553736 9.09033981623998 8.76743655780921 9.07788350355585 8.80954186742973 8.89562692798259 8.62549766665592 8.99801967807672 8.9232274587573 0.124126284970503 0.11777444946699 0.123355281283569 0.118715941802772 0.113679779669427 0.121851487505018 0.115315920252861 0.119017233817826 0.131888034289615 0.114727546715940 0.111970288035124 0.115653707454423 0.110422404876820 0.126251163058071 0.119014577688699 0.110422404876820 0.118609622753271 0.119205958496309 0.115793030365641 3 3 - 5662718 5663395 5663095 5662390 5667809 - gene protein_coding_gene FALSE TRUE AT3G16630.1|AT3G16630.2 ATKINESIN-13A/KINESIN-13A; microtubule motor Kinesin-13A localized to entire Golgi stacks. Involved in trichome development. similar to kinesin motor family protein [Arabidopsis thaliana] (TAIR:AT3G16060.1); similar to central motor kinesin 1 [Gossypium hirsutum] (GB:AAQ18797.1); similar to internal-motor kinesin [Nicotiana tabacum] (GB:AAZ79373.1); similar to BY-2 kinesin-like protein 10 [Nicotiana tabacum] (GB:BAB40710.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) 0.0615118796562937 0.73599864038614 0.477298228293867 1 -0.342896676272055 17.4989617536766 0.0615118796562937 0.0337554862011311
AT4G13320_at 2.12330145060398 1.62051830767854 2.01839719423034 1.89238779440059 1.66865909103654 1.78558389424858 1.38686110221588 1.55730490275002 2.16897602384397 1.73247997318329 1.76465270741971 1.53529902310178 2.18735847755679 2.19560134135316 1.68152059361409 1.66647808690741 1.84070138036815 1.586504257835 1.58687552204815 0.213406220148258 0.214723735571170 0.222505311707642 0.22420574673344 0.224882862638361 0.21638795489058 0.226547055463982 0.21756766559689 0.222404084027047 0.214228872835216 0.215633188298727 0.213406220148258 0.218295812451216 0.213406220148258 0.220907401574566 0.214435162758596 0.218254502883299 0.219960688963536 0.222711826971912 4 4 + 7753537 7753989 7753753.364 7753307 7754082 + gene protein_coding_gene FALSE TRUE AT4G13320.1 similar to gag-pol polyprotein [Zea mays] (GB:AAM94350.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.0735405982473075 0.735617680183773 0.477520854284809 1 -0.343166153837309 3.57498087875122 0.0735405982473075 0.0965688064098236
AT2G43630_at 8.57588246856171 8.47640972811657 8.48806606477599 8.39410065924493 8.6628615297227 8.57847377101545 8.87764620066351 8.90048190607742 8.5666164997704 8.8966095431367 8.7454518019847 8.92733700445403 8.62032198766261 8.68376033404947 9.24910500074377 8.85184275708986 8.64965515502925 8.69801763776586 8.78161212859327 0.117255600132052 0.115667234590610 0.123376950393928 0.124189137035656 0.120880825150235 0.114712854789037 0.124216787751596 0.119252152815266 0.122838215046695 0.118645590988270 0.121175889415454 0.123281941086484 0.114314822797267 0.118931126377348 0.118957432045107 0.118235250461720 0.116842580250259 0.117700230901011 0.120574477490397 2 2|0 +|/ 18103881 18104337 18104127 18102852 18104565 + gene protein_coding_gene FALSE TRUE AT2G43630.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT3G59640.2); similar to glycine-rich protein, related [Medicago truncatula] (GB:ABE86768.1) -0.0609112501588571 -0.735614494400202 0.477522716270593 1 -0.343168406817918 17.3949732161961 -0.0609112501588571 0.0281005216663276
AT4G17800_at 1.10982635550790 1.42065190785647 1.25712548141485 1.11963822683069 1.26450575430960 1.20572322988975 1.42853465134831 1.25692786782500 1.68290438776159 1.43026555039862 1.79267915657954 1.33307079697792 1.71935155806493 1.71137674946588 1.90618895610858 1.57287622439458 1.92625391570017 1.6271468958719 1.30636120942612 0.183866415962981 0.186134138224140 0.187621613395760 0.184698791704252 0.183401411012220 0.185009203747955 0.189783930510364 0.183098129951036 0.182554720480640 0.190461340859856 0.182420703490283 0.185364181895613 0.188445688456146 0.183542681751474 0.187886829174290 0.187431261759822 0.183495887751273 0.188191084814954 0.184767684487300 4 4 - 9895671 9896130 9895936.727 9895303 9896681 - gene protein_coding_gene FALSE TRUE AT4G17800.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G35270.1); similar to hypothetical protein 23.t00073 [Brassica oleracea] (GB:ABD65635.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.0666019799633999 0.735492956736835 0.477593754429563 1 -0.343254351498472 2.84376422479326 0.0666019799633999 0.066669753939271
AT2G28305_at 7.29235156265442 7.49738479205254 7.781054297 7.97307299034627 8.24077789318267 7.82461986575742 8.33744744864396 7.91780596102078 6.42361014596101 6.63089814921416 6.28073700062698 6.46158911651715 6.74347646159167 6.67514384856879 5.75953250918675 6.69792369203166 7.1956627105248 5.654141244647 6.35839116805083 0.212183554419412 0.213531137895707 0.220646050423665 0.210840777030559 0.209451658866091 0.229944684795082 0.21021708866761 0.211769785231531 0.219272717027156 0.216489247186999 0.217870576049669 0.216181983806913 0.208447254077151 0.215046629772809 0.218177877741019 0.222748877753623 0.212359477632975 0.213032031971078 0.217346365627722 2 2|0 +|/ 12088339 12091348 12090518.333 12088190 12091741 + gene protein_coding_gene FALSE TRUE AT2G28305.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37210.1); similar to Conserved hypothetical protein 730 [Medicago truncatula] (GB:ABE89044.1); contains InterPro domain Conserved hypothetical protein 730; (InterPro:IPR005269) 0.0780965778492546 0.735316585913443 0.477696854045604 1 -0.343379048458867 14.3103105066842 0.0780965778492546 0.113241276398794
AT1G61110_at 1.2038570047877 0.96930669040495 1.01268631984383 1.27479600451437 0.920433041268263 0.884797206852967 1.0248477611824 0.946554124703377 1.03086824611004 1.13266528658559 0.923905539047578 0.796208473797015 0.972194568976104 1.16868370832666 1.05131282274755 1.18020615823594 0.991259442097267 0.717427244323283 1.11758366371529 0.217448719714577 0.226529105779002 0.22505890785211 0.222912710670280 0.225376671276086 0.223215828325452 0.228510335957253 0.221827592620577 0.234010286279578 0.223532986301507 0.217596024537200 0.217674820784673 0.217448719714577 0.224424325725842 0.220161620675144 0.225201094598143 0.227961692060876 0.226763383164971 0.223011480078653 1 1 + 22520955 22521677 22521409.636 22520267 22521952 + gene protein_coding_gene FALSE TRUE AT1G61110.1 ANAC025 (Arabidopsis NAC domain containing protein 25); transcription factor similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAM-like protein [Prunus persica] (GB:CAG28971.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.0657596197963988 -0.73477610459227 0.478012885306579 1 -0.343761010011164 2.06408750761018 -0.0657596197963988 0.0626627909990013
AT2G28390_at 7.22291325171409 7.25453450167338 6.6610805129766 7.11986517731094 7.47433038261503 7.24416272428679 7.54026936103554 7.33720035739845 6.70046004895565 7.03773313091323 7.37010591999648 7.43175029979918 7.50098286062424 7.07689468555248 7.34069910382468 7.3303895149459 7.34674484354234 7.10897658844821 7.12085195205327 0.187510284854485 0.177930709855095 0.187112551897398 0.175786258749783 0.181087375385037 0.178362576897916 0.184904399577694 0.177307658551874 0.19599390749835 0.185111124400606 0.181521072858187 0.175786258749783 0.184086584334150 0.184164902753332 0.179942595954214 0.182196252650593 0.194153970130518 0.184438943935879 0.191101567838874 2 2|0 -|/ 12146916 12147834 12147443.3 12146660 12150542 - gene protein_coding_gene FALSE TRUE AT2G28390.1 SAND family protein similar to Os01g0976000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045563.1); similar to HSV-1 stimulation-related 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87032.1); contains InterPro domain Protein of unknown function DUF254, SAND; (InterPro:IPR004353); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.0732166322298073 0.734684885734445 0.478066235850556 1 -0.343825450069629 14.3649610441592 0.0732166322298073 0.0956817722654604
AT4G23520_at 1.17945007329550 1.17803434434699 1.57427329911602 1.19391770399155 1.04947107991675 1.12007137680510 1.51817825416578 1.17813381431073 1.63593045131908 1.26113414764849 1.97263317829243 1.24962719629998 1.3160994465314 1.18230838291556 1.27011445044418 1.1561072068858 1.50032373434740 1.67958041169978 1.69259895980398 0.223569485543095 0.224159693134354 0.223350792065045 0.235276302291887 0.226896973329528 0.226009415031863 0.232802563427011 0.228168619213523 0.225684318974223 0.229349722639715 0.24667620346699 0.227088982303491 0.228006238977972 0.232859557978877 0.236456230683873 0.225021712651448 0.246246635587907 0.234121277904821 0.225328552621173 4 4|0 -|/ 12274467 12275238 12274838.778 12274467 12276229 - gene protein_coding_gene FALSE TRUE AT4G23520.1 cysteine proteinase, putative similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to cysteine protease [Hevea brasiliensis] (GB:ABG33750.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -0.071527179284588 -0.734368684181228 0.478251199264421 1 -0.344048769807248 2.72180979516901 -0.071527179284588 0.0891335691492051
AT3G25170_at 2.60596315713850 2.54203522491759 2.51536838254714 3.04028417966537 2.99016618374163 2.41402670072404 2.9720467220784 2.64531899767955 4.03787256767568 2.67593063418656 2.93443334068168 2.99035657202967 3.03276296790238 2.65237247796305 2.86515377540836 2.74811165142085 2.71656067950115 3.13219810230712 2.61401362312433 0.179637435695990 0.176815423353127 0.172781968877236 0.172393075378073 0.18148219257925 0.178462945522356 0.172764090953710 0.180159726221111 0.189912291808518 0.180571954383094 0.176909731017328 0.177990723077324 0.181241993385266 0.179974580288653 0.175922226251158 0.172393075378073 0.180601342933783 0.180513830541971 0.175315334028904 3 3 - 9165982 9166167 9166080.455 9165758 9166260 - gene protein_coding_gene FALSE TRUE AT3G25170.1 RALFL26 (RALF-LIKE 26) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL11 (RALF-LIKE 11) [Arabidopsis thaliana] (TAIR:AT2G19030.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.0883291214388517 -0.734190185874209 0.478355632325793 1 -0.344174797446824 5.71228417901018 -0.0883291214388517 0.146669425905006
AT3G13270_at 2.10778435268121 2.13814554194294 1.85581007414809 1.98995329010625 1.34282792178499 2.17105416543866 1.63887242589885 1.92690533838438 1.85882996954285 2.51378228194975 2.43927407406559 1.92378517148523 2.50872144968544 2.30578441791883 2.53483141541533 1.96634246062239 2.11029461803809 2.04850952515898 2.52098274344652 0.217383410492931 0.215069057783324 0.225091844061073 0.231165597896046 0.224876987757680 0.22487249593694 0.22352484826325 0.216317557701361 0.227890560275656 0.224247332541542 0.226072326060557 0.217548338008866 0.216688724271621 0.224910265510147 0.214763044478864 0.214763044478864 0.227296990408828 0.233895892862051 0.215022072728599 3 0|3 /|- 4285933 4286328 4286078.556 4285858 4288339 - gene protein_coding_gene FALSE TRUE AT3G13270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14450.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0905938293108237 -0.733860092433947 0.478548795864802 1 -0.344407785384954 4.16019808372906 -0.0905938293108237 0.153603720605966
AT1G03090_at 7.39636729553668 7.56691816720512 7.3402636408956 7.20502003094449 8.26012315385176 8.37195841667995 6.9911882201213 7.06841855473492 7.8260937414357 7.58536820811753 7.2902287502431 7.62565142198303 7.09315836611356 7.44336270988647 7.49408802921692 7.56426609244777 7.44506356164841 7.40786254423523 8.08988072729883 0.157226939717979 0.156809614915609 0.150399097257530 0.156270173929204 0.154981619992338 0.154235580666264 0.153176456768686 0.152108621446217 0.163889482598288 0.150652815716025 0.154531606852942 0.151618495738295 0.1527707537754 0.155405707454674 0.161319603950095 0.146498585576697 0.155716798880764 0.146498585576697 0.149893819944231 1 1|0 +|/ 742845 743682 743276.5 739679 744184 + gene protein_coding_gene FALSE TRUE AT1G03090.1|AT1G03090.2 MCCA (3-methylcrotonyl-CoA carboxylase 1) MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. Identical to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (MCCase subunit alpha) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) (MCCA) [Arabidopsis Thaliana] (GB:Q42523;GB:Q9SA61); similar to CAC2 (acetyl co-enzyme A carboxylase biotin carboxylase subunit) [Arabidopsis thaliana] (TAIR:AT5G35360.1); similar to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor (3-methylcrotonyl-CoA carboxylase 1) (MCCase subunit alpha) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) (GB:Q42777); similar to 3-methylcrotonyl-CoA carboxylase precursor (GB:AAA67356.1); similar to Rudiment single hybrid motif [Medicago truncatula] (GB:ABE80280.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Biotin-binding site; (InterPro:IPR001882); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Biotin carboxylase, C-terminal; (InterPro:IPR005482); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Biotin carboxylation region; (InterPro:IPR011764); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) 0.0626487716906206 0.733698480923203 0.478643385179008 1 -0.344521820370619 15.1521527233741 0.0626487716906206 0.0444080267719359
AT1G57770_at 7.43929046622826 7.35090013169692 7.2902545461193 7.30208876535973 7.41787283680329 7.23411550301834 8.15480497806407 7.77065455036234 7.22536493904981 7.9156922511298 7.54177980550885 8.1461079936874 8.07787995077525 8.23723734273443 7.75028061399917 8.8481375125775 8.48812297254024 8.14669045775346 7.8096597641571 0.176254441875314 0.167664568160664 0.176634288763149 0.181394807322416 0.171099461013742 0.170501238965843 0.173259240474162 0.16989836436478 0.189379846670235 0.173754448334269 0.171517838098343 0.163498352186885 0.174238141248321 0.177169893557720 0.169452587077688 0.166085436000495 0.178598026284656 0.177623299791787 0.171725023969011 1 1 + 21401034 21401768 21401500.727 21398861 21401945 + gene protein_coding_gene FALSE TRUE AT1G57770.1 amine oxidase family similar to CRTISO (carotenoid isomerase), carotenoid isomerase [Arabidopsis thaliana] (TAIR:AT1G06820.1); similar to Amine oxidase [Anabaena variabilis ATCC 29413] (GB:YP_321390.1); similar to Os03g0841900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051855.1); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Phytoene dehydrogenase-related protein; (InterPro:IPR008151) 0.0682304888277014 0.733617690505034 0.478690675234632 1 -0.344578818580329 15.3973820051945 0.0682304888277014 0.0752919474251897
AT1G44740_at 0.982652976961686 1.26990431167799 1.10533161887235 0.92962461427782 0.977473910085073 1.21332265695209 1.48253502985804 0.730946545376825 1.18399019279187 1.72265025207017 1.64981557101967 0.951692066621283 1.10309147226448 0.776967822312438 1.34987007728693 0.918909335701228 1.29265832639443 1.16065281329953 0.897023968145517 0.206096913878471 0.212347529634203 0.22013907763007 0.212354564041753 0.20151615183134 0.206888327238406 0.205136192258445 0.202382507327322 0.215470841832927 0.202715601616020 0.202932356895148 0.204400134100254 0.207380837122844 0.203399470449399 0.210421655157249 0.206194989286461 0.205622677138880 0.208784676383421 0.208328996250734 1 1|0 +|/ 16890661 16891293 16890946 16889844 16891595 + gene protein_coding_gene FALSE TRUE AT1G44740.1 unknown protein -0.088751233989245 -0.733364869579114 0.478838680878844 1 -0.344757149083581 2.29564661964857 -0.088751233989245 0.148252018895041
AT3G46600_at 7.51129381136258 7.41018378796455 7.97377470832076 8.20150195156609 8.06001390513679 7.50852151107178 7.7754759991709 7.66859178196172 7.20656962086013 6.63120439358945 6.5736746375788 6.91519921388352 6.04821629448881 6.75627403471636 6.28087204088226 6.54223648979149 6.42740389876576 6.57999191313864 6.28705477288075 0.199151919621869 0.200309834715423 0.20435873039417 0.201262078323217 0.204983391420283 0.213317198523058 0.214261690136233 0.199162882752266 0.204385432430185 0.200053480715708 0.200000956794786 0.201568618204124 0.201573973363221 0.199151919621869 0.204604805277631 0.207498269557168 0.201029528493704 0.202933722672676 0.204019508445111 3 3 + 17170263 17170740 17170470.364 17168909 17170950 + gene protein_coding_gene FALSE TRUE AT3G46600.1|AT3G46600.2|AT3G46600.3 scarecrow transcription factor family protein similar to scarecrow-like transcription factor 11 (SCL11) [Arabidopsis thaliana] (TAIR:AT5G59450.1); similar to GRAS1 [Nicotiana tabacum] (GB:ABE02823.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.075886988435591 0.732816022370578 0.479160083591099 1 -0.345144095412614 14.3755495959940 0.075886988435591 0.106347833066364
AT2G24440_at 2.89064934065531 2.72078475473786 2.56667963302235 2.70696755320484 2.3106812612755 2.30253339303329 2.61303614314908 2.40675334284989 2.66339553605730 2.60398364213409 2.99792532490798 3.00428283241306 2.72059981900134 2.91618330085695 3.31668106384544 2.49725330252958 2.95217289082189 2.85190658931495 2.51327580117099 0.187630150237506 0.183810691106614 0.194426453106021 0.180638519339312 0.182852916524690 0.189328886733472 0.182838388960964 0.187625039277770 0.187993088450042 0.185330436977309 0.192127559630713 0.186852702379838 0.190371326717320 0.180638519339312 0.192456203985141 0.184155950373557 0.188012874219023 0.18374901122928 0.183103739085282 2 2|0 +|/ 10398294 10399533 10398774.286 10398169 10399908 + gene protein_coding_gene FALSE TRUE AT2G24440.1 selenium binding similar to selenium binding [Arabidopsis thaliana] (TAIR:AT4G31360.1); similar to Os05g0250500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055027.1); similar to Os11g0704000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068541.1); similar to selenoprotein H [Danio rerio] (GB:NP_835234.1); contains InterPro domain SelT/selW/selH selenoprotein; (InterPro:IPR011893) 0.0637417727299495 0.732634199260189 0.479266588140993 1 -0.345272226285014 5.31509932786544 0.0637417727299495 0.0522480832202583
AT2G25355_at 3.03396181980348 3.56184190242832 3.40900109043999 3.55388414125493 2.66798341432041 3.06874822739547 2.91187916371400 3.56020457163032 2.60051114235044 2.62486513035092 2.41437970057082 2.62944128478031 2.55852626552688 2.73171133824003 2.42194476568789 2.83010482190461 2.80792874357874 2.66321194145220 2.95540820112643 0.244681807257509 0.230242808253068 0.224196733668699 0.230161330683219 0.227581137287052 0.23587854053615 0.226413949002268 0.228719731197724 0.226477809137817 0.239783738547932 0.22830136389866 0.219525305432916 0.232830998118238 0.230445498394612 0.219461827936634 0.219045186497467 0.221893454363321 0.222118993271069 0.229911330322744 2 0|2 /|+ 10809632 10810572 10810186.889 10808357 10810801 + gene protein_coding_gene FALSE TRUE AT2G25355.1|AT2G25355.2 exonuclease-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32175.1); similar to Os01g0891400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045055.1); similar to Os01g0661400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043778.1); similar to ALM beta-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72364.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0934198481331198 -0.732607064941415 0.479282483582483 1 -0.345291345407590 5.9004801742035 -0.0934198481331198 0.16239377637891
ATMG00160_at 2.01550819464640 3.08259862501603 2.53365416750490 2.87898526244933 2.55994991998159 2.86171748446025 2.55146357404138 3.80822648757709 2.59823740438620 2.62488754194402 2.33696876139136 2.35977074044031 3.0240965531863 2.42387599075757 2.59722660942112 2.7419494626699 2.45919726990541 2.49628005783802 2.83986140059597 0.212331711646825 0.228266446966854 0.219385091701347 0.220018229137956 0.220096662089545 0.216406943570267 0.218791515214393 0.222117983595734 0.223566885477392 0.216315432481906 0.214645792281060 0.212331711646825 0.21778231599919 0.218866513411865 0.225213149084272 0.212331711646825 0.226788041621230 0.217556320458683 0.231822533960990 M M|0 -|/ 40517 42351 41788.667 40502 42628 - gene protein_coding_gene FALSE TRUE ATMG00160.1 cytochrome c oxidase subunit 2 similar to cytochrome c oxidase subunit II, putative [Arabidopsis thaliana] (TAIR:AT2G07695.1); similar to cytochrome c oxidase subunit II [Raphanus sativus] (GB:AAB88866.1); contains InterPro domain Cytochrome c oxidase, subunit II; (InterPro:IPR002429); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Cytochrome C oxidase subunit II, transmembrane region; (InterPro:IPR011759); contains InterPro domain Copper center Cu(A); (InterPro:IPR001505) -0.144306973331011 -0.732553043018811 0.479314130917373 1 -0.345329407919740 5.40780436263128 -0.144306973331011 0.296143619738851
AT1G62950_at 2.11913086787282 2.05404662998636 1.95379316061277 1.87487048688463 1.8348630060851 2.21686800392092 1.84630110331332 2.35129717477255 2.42954616233148 2.48473196939608 2.51047424599368 2.50046340768799 2.29458178983323 2.32491423099418 2.32574486087494 2.53869023867943 2.48820134440989 2.30457490997638 2.41372432133928 0.216304828830185 0.216807990723892 0.218647344039811 0.218691646299950 0.219995971498401 0.216304828830185 0.220199762621876 0.216304828830185 0.230755145169625 0.216304828830185 0.220928239859468 0.219795283397098 0.216304828830185 0.223078116202461 0.226337124229461 0.216304828830185 0.220136807688146 0.218915512990171 0.220870721274584 1 1 + 23321144 23321550 23321331.091 23318959 23321893 + gene protein_coding_gene FALSE TRUE AT1G62950.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G12460.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM88626.1); similar to Os03g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048834.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.077153567704904 -0.732461112254611 0.479367989154681 1 -0.345394174265293 4.45820786063697 -0.077153567704904 0.110999910445021
AT3G15900_at 8.0978622841055 8.36995274081205 8.10126787685337 8.21020153848587 8.35324203261002 8.03641137794104 8.03949492686117 8.58571869182241 7.8299597264639 8.12756239746016 7.4492928592081 8.20918631037456 8.04084334894346 8.03150625112978 8.1085278154898 8.54473766198635 7.9346224391756 7.9563806088342 8.33107416463111 0.135123342268382 0.132250931387872 0.142258313625585 0.133788381181670 0.136387032964577 0.133644428638236 0.131811622466741 0.128870262738325 0.147578077098183 0.137341616491158 0.142444692077152 0.130953014413330 0.147833970638813 0.136200801127340 0.142755325604310 0.135054608893111 0.136695586462846 0.134509602249644 0.129360069411562 3 3 - 5376412 5376940 5376661.545 5376257 5377185 - gene protein_coding_gene FALSE TRUE AT3G15900.1 similar to Os02g0804400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048433.1) -0.079894027693349 -0.732338843326816 0.479439627050416 1 -0.345480302896025 16.2895618960587 -0.079894027693349 0.120474117430789
AT2G21820_at 3.86981593582528 3.55463282314813 3.90208983568388 4.24380993790656 3.31314160549429 3.64098980379243 3.53646680532611 4.26498954108256 3.53350526829883 3.94311143958222 3.20897317496919 3.78270292504552 3.55421606702396 3.47118676105403 3.75825646139622 3.31101043440303 4.13636605099621 3.77763788763449 3.8592952729364 0.204279797516378 0.211304930465592 0.209511703784696 0.219240401793565 0.204279797516378 0.207402790651896 0.210189108696972 0.208730223559248 0.209613266567285 0.206740487736438 0.22274747085991 0.206945803310051 0.209947502265282 0.206373559424577 0.213923065942467 0.204279797516378 0.209500688777894 0.220575717916628 0.210864980128104 2 2 - 9310063 9310274 9310175.364 9309965 9310327 - gene protein_coding_gene FALSE TRUE AT2G21820.1 similar to seed maturation protein PM41, putative [Medicago truncatula] (GB:ABE86900.1) -0.0925310436250252 -0.73217083652142 0.479538073855348 1 -0.34559862910204 7.49258255965965 -0.0925310436250252 0.159955581927300
AT3G27540_at 5.62708893771484 6.77600883290525 6.978012470612 6.95416576720525 6.55314936849829 5.59428800048245 7.98141615151293 7.86685227427294 6.82154292573979 6.301687666564 7.13810535628126 6.79242145821897 6.91831305058455 7.5653629205378 6.64401395599728 6.97841632317437 5.44204113266714 6.6015251429168 6.3057354156243 0.229694679848202 0.221460839576533 0.243875656860681 0.224715135923588 0.221460839576533 0.256812466835071 0.225134148843007 0.22885624703328 0.285033403264923 0.221981929949260 0.221460839576533 0.221460839576533 0.226920648020016 0.221460839576533 0.240502600799671 0.221460839576533 0.275075275721197 0.239940606514542 0.231256559296226 3 3 + 10207528 10208035 10207799.273 10206545 10208543 + gene protein_coding_gene FALSE TRUE AT3G27540.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G01620.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G14480.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G12990.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) -0.129617366248708 -0.73181076056578 0.479749109705809 1 -0.345852146271926 13.4095461854955 -0.129617366248708 0.259762232791112
AT2G44990_at 2.24353410680931 2.85510246254277 2.36814700255819 2.20240602720934 1.95846091965198 2.26127436043120 2.03635277813378 2.00613746964116 2.45854335266092 2.30280594873151 2.08896904261008 2.38292590753358 2.31794754961855 2.55521174737283 2.55576592663847 1.99884628816017 1.96971797227568 3.00884852654703 2.53591078161089 0.265835123619024 0.260797258976671 0.262564379856614 0.260814877641403 0.252382980600191 0.256503228090431 0.252382980600191 0.270187371759925 0.260211615952444 0.255782708969157 0.255121957837437 0.253907241358732 0.256898716524523 0.252529025050993 0.259464664096136 0.253615455430871 0.253943602794077 0.261180369970557 0.256324156322403 2 2 + 18567767 18568366 18568026.636 18566013 18568408 + gene protein_coding_gene FALSE TRUE AT2G44990.1 CCD7 (more axillary growth 3) More Axillary Branching; carotenoid cleavage dioxygenases. similar to NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) [Arabidopsis thaliana] (TAIR:AT3G24220.1); similar to OSIGBa0122F23.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67145.1); similar to Os04g0550600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053491.1); similar to dioxygenase RAMOSUS5 [Pisum sativum] (GB:ABD67496.2); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) -0.0801752671961496 -0.731724581885241 0.479799626497866 1 -0.345912805106155 4.63752646475337 -0.0801752671961496 0.121643380317452
AT4G13960_at 1.50489298602502 1.83476295336498 1.70671341071764 1.77062673695794 1.83389983619851 2.14818874884647 1.89427720613974 1.82591816590822 1.97601047083896 1.45280152402421 2.05875056105204 1.61291293250225 1.93814699635559 2.09164490821150 1.52514514861661 1.99578770603019 1.83236621110456 1.89382715546142 2.06138479025464 0.181148027351025 0.181148027351025 0.194861306872231 0.187446960109064 0.184910216794679 0.188690302555773 0.189763196563403 0.187404772527360 0.190653479052763 0.187006474213304 0.185358906814271 0.185862288889086 0.181761880154395 0.184483780024274 0.181148027351025 0.18261664645703 0.187969970406134 0.185130860313827 0.186848395391122 4 4|0 -|/ 8060729 8061376 8061011.556 8060676 8062226 - gene protein_coding_gene FALSE TRUE AT4G13960.1 F-box family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52650.1); similar to Os10g0128600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064091.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM23236.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51974.2); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0692007313490747 0.7315597070902 0.47989628314025 1 -0.346028838100544 3.66422915424784 0.0692007313490747 0.0804935986329014
AT3G47240_at 1.65404401490892 1.43862199030390 2.05628410381797 1.9321347573325 1.58717672643718 1.54586529791453 2.01819554886042 1.57067490054158 2.04992498728126 2.10478427361514 2.25724214567035 1.68445731171604 2.23067568037164 2.18121306053386 2.24007405260553 2.12889404060294 2.16549023106023 1.78200354467094 1.99965529997266 0.206221569218646 0.206221569218646 0.209208343065436 0.214823799272030 0.216341859862744 0.206221569218646 0.206804902714087 0.209527387267885 0.206221569218646 0.210019962640511 0.206221569218646 0.206221569218646 0.214683700268487 0.206221569218646 0.206221569218646 0.213059619382717 0.215070842714999 0.216583400725566 0.206417210922147 3 0|3 /|- 17404871 17404871 17404871 17404846 17405973 - gene protein_coding_gene FALSE TRUE AT3G47240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1) 0.07114125625138 0.73103698887928 0.480202803077665 1 -0.346396553078531 3.79298022352811 0.07114125625138 0.0888835900052625
AT1G49870_at 1.79564875808111 1.54605245651751 1.25688827918783 1.35618655990953 1.20580488619876 1.57200922454337 1.07850805769362 1.80563174790498 1.65299820349769 1.56386582055019 1.73315408943666 1.28587263021210 1.40074335008137 1.51631152257274 1.78155888346438 1.53835796981342 1.47163588543718 1.80027513746758 1.38589447840450 0.198716820449901 0.190401474837788 0.188574659939148 0.187004256422106 0.190601941968141 0.191230493585419 0.186394847355359 0.194739559808012 0.188583385377896 0.192879856474444 0.193782077760643 0.196153093428979 0.185183376309073 0.185183376309073 0.193663138630270 0.185183376309073 0.189009245074842 0.196279721448414 0.19635071967807 1 1|0 +|/ 18466686 18467057 18466895.7 18464013 18467225 + gene protein_coding_gene FALSE TRUE AT1G49870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to putative transport protein [Oryza sativa (japonica cultivar-group)] (GB:AAT78760.1) -0.0885010840897719 -0.731002061475977 0.480223288718057 1 -0.346421114927784 3.00221200511032 -0.0885010840897719 0.148360737317084
AT2G04700_at 10.8570302678569 11.0362156306555 10.9068826915618 10.8841539769675 11.1185331626371 10.8120733129769 11.0874717955588 11.1586192721156 11.1015636486347 11.0799648960713 11.2999409806142 11.2712773094119 11.1471357893725 11.4646460389598 10.9708514475357 11.2639672762967 11.0465686545312 11.3460855172341 10.7914665786274 0.121113352906334 0.116497226155623 0.122384626124404 0.122792852667037 0.120303666148441 0.128454158922260 0.119478897449652 0.116497226155623 0.129630390861850 0.116497226155623 0.118433875457494 0.116497226155623 0.116497226155623 0.118217875120447 0.122896916411583 0.117095156784480 0.125476474987207 0.121472774698431 0.125519781025703 2 2|0 +|/ 1646975 1648103 1647417.5 1646804 1648554 + gene protein_coding_gene FALSE TRUE AT2G04700.1 ferredoxin thioredoxin reductase catalytic beta chain family protein similar to Ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor (FTR-C) (GB:O49856); contains InterPro domain Ferredoxin thioredoxin reductase, beta chain; (InterPro:IPR004209) 0.0654436483945873 0.731000200050552 0.480224380497632 1 -0.346422423900447 22.0912762643858 0.0654436483945873 0.0627794026233854
AT4G11760_at 2.51908881323243 2.27523080759127 2.32940505641813 1.92637464737512 2.04137349081234 2.40368748809766 2.18579100895468 2.26279838842015 2.43861600169415 2.74157341567927 2.54285720260440 2.45006782638083 2.78277722631658 2.34070165319119 2.74778369788228 2.23485317547251 2.77088919287171 2.39451676591933 2.46212680432436 0.19283444298246 0.197637307959240 0.195567897776791 0.191626956860432 0.199883568332722 0.191236102318954 0.198631431028963 0.194423537935347 0.195594100295741 0.188263223646672 0.191115223110618 0.195196886280556 0.191027753006730 0.196036184875553 0.187836808935839 0.187836808935839 0.191016008017486 0.191231989599483 0.191434881069372 4 4 + 7079323 7080102 7079815.909 7079310 7080439 + gene protein_coding_gene FALSE TRUE AT4G11760.1 LCR17 (Low-molecular-weight cysteine-rich 17) Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Identical to Low-molecular-weight cysteine-rich protein LCR17 (LCR17) [Arabidopsis Thaliana] (GB:Q9T0E3;GB:Q6GKX9); similar to LCR11 (Low-molecular-weight cysteine-rich 11) [Arabidopsis thaliana] (TAIR:AT4G11485.1); contains InterPro domain S locus-related glycoprotein 1 binding pollen coat; (InterPro:IPR010851); contains InterPro domain Knottin; (InterPro:IPR003614) -0.0749499909299451 -0.730759082029672 0.480365816226584 1 -0.346591955121112 4.78321600418561 -0.0749499909299451 0.103703186934604
AT1G04790_at 5.30155279357055 5.14997661008666 4.80642215123456 5.41307785147696 6.29447562782276 5.34183895395793 5.60860385090153 4.85566074275054 4.81919523838784 4.32824653731316 4.44776494433006 4.46892303488036 4.43533666279459 4.90721576222666 4.48098586540812 4.52989577150563 4.84888403973255 4.68339538557485 4.63672104165385 0.226469531782738 0.228730460537302 0.229666969259183 0.224452042794062 0.220632646744150 0.241261978856234 0.238170657664192 0.227172862178299 0.224055241226204 0.224488158125790 0.234147861763874 0.226971366404592 0.22995992529838 0.226983409230292 0.233120425144361 0.220007799502478 0.238302984048956 0.222845918695224 0.233038164044966 1 1|0 +|/ 1347005 1348116 1347525.222 1345035 1348450 + gene protein_coding_gene FALSE TRUE AT1G04790.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G55530.1); similar to hypothetical protein DDBDRAFT_0204786 [Dictyostelium discoideum AX4] (GB:XP_640074.1); similar to Os04g0511600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053293.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.120292195492025 0.73068227893345 0.48041087306372 1 -0.346645945178668 9.94396163393763 0.120292195492025 0.236360390860542
AT1G51110_at 8.89288141407423 8.74774920943348 8.93107747311575 8.65906284948987 9.7120384961192 8.94616146134796 10.3974121271177 9.8154363434427 9.84518824907154 9.93578578942701 10.2813018598487 10.0561421169254 10.0314516338068 10.2194964406348 10.0003135364835 10.4185243105478 9.88394378099329 10.1537014935444 9.99181370613745 0.0968156437025152 0.0972596881663419 0.0996154718058978 0.0974347678260402 0.0976293694683034 0.097496271605207 0.0988891304021 0.0998935680156697 0.0999916327887772 0.095380110527303 0.095264046896542 0.0991701647210739 0.0933216471828614 0.0965799265614219 0.0943447106186922 0.0949574325754753 0.0959336501557325 0.0952244538787377 0.096913672047163 1 1|0 +|/ 18939237 18941120 18940296.053 18938997 18941328 + gene protein_coding_gene FALSE TRUE AT1G51110.1 plastid-lipid associated protein PAP / fibrillin family protein similar to plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] (TAIR:AT3G26070.1); similar to PAP fibrillin [Medicago truncatula] (GB:ABE81557.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.097468944223035 -0.730582999000455 0.480469119925044 1 -0.34671572815255 19.2901634108393 -0.097468944223035 0.1748039505331
AT1G49510_at 7.18082654945173 7.33467960159831 6.59928721936536 6.91311363086041 7.40008042894568 6.97393400447062 7.73352173958217 7.68221976857127 5.92042066348015 7.1386471386937 7.16895828017686 7.5486590535824 7.49028906485589 7.12660304656104 7.62866081977609 7.83176678545828 7.14091843740394 6.80678000086239 6.99882389426556 0.235301801821396 0.224227920870619 0.227504692392122 0.224263416488718 0.217517819537919 0.24569028755971 0.223678551920468 0.241947447236253 0.257380339424564 0.22293055626733 0.221264502420350 0.218605119765024 0.224449658295348 0.225654933511439 0.243817328179209 0.223010505783998 0.248862891606752 0.247820139665867 0.223752829606503 1 0|1 /|+ 18331156 18331483 18331359.75 18330557 18332278 + gene protein_coding_gene FALSE TRUE AT1G49510.1 EMB1273 (EMBRYO DEFECTIVE 1273) 0.072828721690561 0.730511903488984 0.480510833880107 1 -0.346765695309116 14.2416045353046 0.072828721690561 0.0957901640575394
AT1G09510_at 0.860510277930837 0.802448151071596 1.34411258126328 0.973024388065914 0.438802694906162 0.82827509261168 0.847335436732835 1.02753973299419 0.753677153155169 0.942842283592637 0.730709943792308 0.770805699742041 0.99171995970963 1.01512178255807 1.08918858473815 1.02884272995820 0.981179021521995 0.742118281441405 0.652939596652579 0.198918880847613 0.198524159156925 0.198524159156925 0.202151229923312 0.200923819547231 0.205867605440760 0.201550395183447 0.19852782997387 0.204215717565697 0.211239099424782 0.200574771022415 0.200759311660702 0.211534721026271 0.203233220427397 0.207141174162456 0.202604854542045 0.206691721471355 0.205866575380192 0.200632692184466 1 1 + 3070072 3070774 3070408 3069387 3070912 + gene protein_coding_gene FALSE TRUE AT1G09510.1 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09500.1); similar to cinnamyl alcohol dehydrogenase [Quercus ilex] (GB:CAJ43901.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.0735765144143281 0.730426891734043 0.480560715889788 1 -0.346825437300993 1.74118792523016 0.0735765144143281 0.098692756862332
AT1G02730_at 2.67621445947502 2.45682112046257 2.08663451887131 2.18574044070762 1.68929441979944 1.92399699354287 2.44293561806764 2.29216859456437 2.27976287164419 2.87052150935374 2.78524802984059 3.80200878096204 2.82573733111616 3.0875844507958 4.517709015221 3.11872127270427 3.12212370369386 3.60928666742660 3.04505087064038 0.211313277052502 0.203960706271331 0.206615422330641 0.205858747721420 0.207996769603167 0.210090781402515 0.20310620427471 0.199315733532082 0.206542174120401 0.200036360163679 0.201140064845319 0.198834280564313 0.204419496001597 0.201701946166679 0.210232117805545 0.199387049576432 0.207878304457995 0.198834280564313 0.198834280564313 1 1 - 594750 595224 595009 594573 598657 - gene protein_coding_gene FALSE TRUE AT1G02730.1 ATCSLD5 (Cellulose synthase-like D5); cellulose synthase encodes a gene similar to cellulose synthase similar to ATCSLD4 (Cellulose synthase-like D4), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38190.1); similar to CSLD3 (CELLULOSE SYNTHASE-LIKE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G03050.1); similar to ATCSLD2 (Cellulose synthase-like D2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16910.1); similar to cellulose synthase-like D3 [Physcomitrella patens] (GB:ABI75153.1); similar to cellulose synthase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99552.1); similar to cellulose synthase-like D6 [Physcomitrella patens] (GB:ABI75156.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) 0.06557781717259 0.730411101421096 0.480569981464024 1 -0.346836533251251 5.26439118252776 0.06557781717259 0.0637657510383189
AT2G30900_at 2.52610646805606 1.88225303255538 2.72395190700026 2.69179404045296 2.60369685790520 2.40629263479816 3.12100036872601 2.82468632563852 2.91533796619056 2.81114763377735 2.71575051741143 2.49135174326144 3.24850648599771 2.99201178406423 2.75611245983534 3.38375025797277 3.27857573897907 2.9297919793962 2.76009734494762 0.238123554760208 0.236672928418274 0.238900732999953 0.229042706617808 0.233459107655088 0.235477838980054 0.227060095290163 0.234190202583292 0.230119578946122 0.232233946347124 0.227689984987364 0.234489192054839 0.231892375723040 0.230779325667569 0.227060095290163 0.230313955333136 0.234571013556148 0.24838445448134 0.230183429627306 2 2|0 +|/ 13158645 13159435 13159068.4 13157561 13159494 + gene protein_coding_gene FALSE TRUE AT2G30900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78710.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42570.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); similar to Os01g0652100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043736.1); similar to Protein of unknown function DUF231, plant [Medicago truncatula] (GB:ABE82889.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.0817713502607085 0.730307676226255 0.480630672930441 1 -0.346909205438583 5.49914388064321 0.0817713502607085 0.127445309588950
AT3G57900_at 2.63890526506702 2.78223532879791 3.00820105980229 2.77550479425378 2.80700058140385 2.85148050632495 2.74710853964093 2.86647472360533 3.06590986400554 3.25349427814753 2.70602041881307 2.78937006801894 3.30038687492603 2.6328298317358 2.62392925404884 3.0727310802174 2.9507565406622 2.85987008387141 2.96825624183472 0.171537667663602 0.170976985063537 0.169084756665941 0.174780985033913 0.172602273219053 0.169707502257456 0.171197651610569 0.171207976641702 0.177017894037366 0.170677448942398 0.171117268457462 0.169084756665941 0.172647255345571 0.172377907861050 0.171574307823681 0.172400303530348 0.173911694584283 0.169084756665941 0.177285264866109 3 3|0 -|/ 21453261 21453525 21453378.556 21453258 21453551 - gene protein_coding_gene FALSE TRUE AT3G57900.1 unknown protein -0.0635171272287324 -0.730177414803029 0.480707119090585 1 -0.347000721053853 5.79105063171166 -0.0635171272287324 0.0521804461498387
AT1G35410_at 0.368692786884399 1.04258669631715 0.305633899801012 0.752457375917945 0.780173410579668 0.913838707847247 0.637591329901927 0.838761468533647 0.887128317614554 1.28026926008713 -0.0380647797493688 1.00227168312392 1.41594691591235 0.495879394292514 0.155749189814888 0.74181662976731 1.15378660614916 0.555460245612244 0.312840868291524 0.280627406416625 0.27723490589924 0.276586246868461 0.288605927613765 0.279844821615956 0.286936237546719 0.28402821521679 0.307544402625737 0.323919593265962 0.276586246868461 0.285655595805218 0.286222833271200 0.283469469613805 0.276586246868461 0.276586246868461 0.279156177195110 0.298188539336406 0.281991385692767 0.276586246868461 1 0|1 /|+ 13024855 13024895 13024877.667 13024139 13024919 + gene protein_coding_gene FALSE TRUE AT1G35410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35400.1); contains InterPro domain Protein of unknown function DUF1184; (InterPro:IPR009568) -0.08763631746092 -0.730152768731754 0.480721583913597 1 -0.347018034584842 1.46101790161276 -0.08763631746092 0.146035995919661
AT3G05930_at 0.993538768803428 0.589090484014914 0.87121755176734 0.743296859293976 1.00365653390608 0.8755815272936 1.00259510615841 0.890265023314739 1.02387337945615 1.07109401302180 1.09246962906196 0.489200646088202 0.201314730716578 0.49125819855226 1.07939606021446 0.853327733836787 0.977235728661802 0.556520367454454 0.483866905117912 0.202695755751153 0.190825077449838 0.192318044068391 0.187961658201496 0.191666983767235 0.193514481368031 0.195401821385488 0.190167605210386 0.205489670931930 0.188277701954894 0.198894320231107 0.206262853966445 0.211950826435299 0.196625639844978 0.192687503837783 0.187961658201496 0.194587353477247 0.198581718894337 0.197721328725203 3 0|3 /|+ 1770705 1771108 1770915.6 1770343 1771415 + gene protein_coding_gene FALSE TRUE AT3G05930.1 GLP8 (GERMIN-LIKE PROTEIN 8); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP8) Identical to Germin-like protein subfamily 2 member 3 precursor (GLP8) [Arabidopsis Thaliana] (GB:P93000); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G26700.1); similar to germin-like protein 2 [Vitis vinifera] (GB:ABH09468.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -0.068727636608132 -0.729882393789834 0.480880285236874 1 -0.347207934799784 1.65975614149669 -0.068727636608132 0.0791076336064747
AT4G21640_at 0.645659503602110 0.379131361932684 0.987695754596849 0.905147921791432 0.589951428707487 1.18851959295511 0.197032222192514 1.0850877562084 1.55706937081044 1.21450587247722 0.881582639903208 0.98918260979078 0.968814483670438 0.374636395015063 1.60461871110995 1.14198394931124 -0.231112962080296 0.608523122770442 1.24836125405089 0.260980240151061 0.290060938753547 0.327991570318643 0.260980240151061 0.260980240151061 0.337596757704244 0.290415829751081 0.260980240151061 0.323003652456809 0.260980240151061 0.260980240151061 0.260980240151061 0.260980240151061 0.335049913737519 0.260980240151061 0.260980240151061 0.265894881729374 0.294212827947913 0.304339949682419 4 4 - 11496857 11496997 11496950 11496846 11500630 - gene protein_coding_gene FALSE TRUE AT4G21640.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10520.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21630.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21650.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.103299625115518 -0.729530493024988 0.481086888406482 1 -0.347455000626087 1.81340691831459 -0.103299625115518 0.191519047873133
AFFX-r2-Bs-lys-M_at 1.85570740326424 1.55739031492636 2.21690235217548 1.58612467385275 2.82007503360141 1.76126689266436 2.66853271960871 1.23593246143554 2.40474550559661 3.26321811909077 3.53389952544879 3.62624877578491 2.64526785725882 3.12682056323844 2.50956921331387 3.37964096631588 2.10471409793424 2.15086191042332 2.83855771284652 0.18329692802897 0.182334616862638 0.178192358386378 0.187254834592155 0.186792647386119 0.189862664692286 0.181296292396261 0.184017042044969 0.176518292539859 0.184252969387672 0.178422960842765 0.180676890746939 0.180411116179833 0.189347918825575 0.179126426464132 0.182785847266591 0.191979247558817 0.177900633744600 0.182259461182634 NA NA NA NA NA FALSE FALSE 0.157911132234135 0.729456012115402 0.48113062370163 1 -0.347507279144658 4.82280896955415 0.157911132234135 0.331086260838359
AT2G23240_at 2.35763698318253 1.93404953600060 2.31581464845964 2.30575194139882 2.0030380461972 1.97502249446794 2.44224569522221 2.12686538721216 3.09073224973889 2.76320883248589 2.88078213100753 2.22512879901280 2.68464865654154 3.01286619961992 2.58728816684832 2.81873963845094 2.94167028347546 2.64709983265269 2.55431391213009 0.210099701148057 0.218461100203682 0.209554514059101 0.211876851366034 0.214914551393103 0.218391602215313 0.218505370624321 0.217805060955679 0.217263000810045 0.215165226140197 0.207448541961313 0.207448541961313 0.21254018074306 0.207448541961313 0.211338317993517 0.207448541961313 0.211459408977047 0.210559533696129 0.209815193674611 2 2|0 -|/ 9903094 9903363 9903199 9902935 9903405 - gene protein_coding_gene FALSE TRUE AT2G23240.1|AT2G23240.2 plant EC metallothionein-like family 15 protein Identical to EC protein homolog 2 [Arabidopsis Thaliana] (GB:Q42377;GB:Q9SLN4); similar to plant EC metallothionein-like family 15 protein [Arabidopsis thaliana] (TAIR:AT2G42000.1); similar to EC protein homolog 1 (GB:P93746); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347); contains InterPro domain Whey acidic protein, core region; (InterPro:IPR008197); contains InterPro domain Plant EC metallothionein-like protein, family 15; (InterPro:IPR000316) -0.0716331595536403 -0.729350110892874 0.481192813307869 1 -0.347581603467771 4.94631790563569 -0.0716331595536403 0.0915354798439545
AT3G17710_at 2.78786928817494 2.87088349279062 2.55204533896655 3.02598590952854 2.72831166326174 2.62994836909196 2.63538646128763 3.01232653723099 2.56003707379543 2.080249189081 2.55247055498545 2.70513095857167 2.83197297121310 1.9800851435423 2.14300863551156 2.59477834225056 3.07480240655124 2.00757457964315 2.08653135118375 0.216727836467788 0.222360727405289 0.228180267137859 0.216727836467788 0.220705704999606 0.224914242379998 0.216727836467788 0.245780085923719 0.229151842657065 0.216727836467788 0.243565385284167 0.216727836467788 0.220358669409939 0.224143034016633 0.216727836467788 0.216727836467788 0.216727836467788 0.222983516643337 0.220253540960692 3 3 + 6056118 6056467 6056248.5 6055554 6056784 + gene protein_coding_gene FALSE TRUE AT3G17710.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G18340.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE85493.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0757058931773592 0.728967666575491 0.481417442167333 1 -0.347849932318557 5.14459487606847 0.0757058931773592 0.10713609776328
AT1G32760_at 2.39082909611532 2.53924265772405 2.31383750610238 2.05597110569337 1.91221468859537 2.3812456434516 2.64335077002251 1.90661464393956 2.67331016479302 2.10824840094174 2.66751942536357 2.70019078986846 2.66311995264558 2.52900118175317 2.67868574731289 2.67061983879769 2.72997681064552 2.67236458709698 2.04561810796487 0.205709683681616 0.211680465633559 0.214048972543561 0.208318309287431 0.212325651759824 0.217695765481821 0.206569273916519 0.205360313242926 0.205527654783324 0.217859795730295 0.207062550702075 0.210886472678333 0.206566103695341 0.202339462798893 0.207289269616076 0.202339462798893 0.209672926333911 0.210943755964393 0.217445613899414 1 1 + 11858576 11859146 11858800.909 11858191 11859272 + gene protein_coding_gene FALSE TRUE AT1G32760.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Medicago truncatula] (GB:ABE80146.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.0920085888979647 0.728803561296776 0.481513849477357 1 -0.347965032292446 4.7377434387482 0.0920085888979647 0.159669710774558
AT1G10150_at 9.56586416121943 9.87648323557247 10.1974649942112 10.3212822945989 10.5931603021903 10.3541595375237 10.3779509497633 10.4074873194824 9.97134995060262 9.8431553941984 9.71126822483823 9.4309127310682 10.1002234391340 9.6891676447189 8.84265163148935 10.1625909079880 10.1611076307529 9.88014749537374 9.95464411459966 0.0967853315728606 0.097307673132986 0.104252569380889 0.096643148684931 0.100821752365298 0.0973491494029878 0.0969937627299218 0.097794633204156 0.103614964233600 0.0955607616741797 0.09775997400141 0.0942221703794003 0.096131254673381 0.101215666039421 0.105988124378802 0.0938701097179777 0.0969513713553536 0.0938701097179777 0.098665961569794 1 1 + 3326910 3327372 3327148.364 3325826 3327616 + gene protein_coding_gene FALSE TRUE AT1G10150.1 ATPP2-A10 (Phloem protein 2-A10) similar to CF9 [Arabidopsis thaliana] (TAIR:AT1G59510.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85053.1); similar to Os03g0769900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87321.1); contains InterPro domain Growth factor, receptor; (InterPro:IPR009030) 0.0668896294958969 0.728286650589652 0.481817598669875 1 -0.348327430116712 20.0468858658055 0.0668896294958969 0.0713121074806277
AT2G33700_at 5.26942055036197 5.46754113569715 5.5767697572445 5.65556247433287 6.21147820154034 6.21327303414041 5.87357885706075 5.76399284523096 5.43204052480971 5.55665084166552 5.31741972606544 5.15966696207929 5.21248257186075 4.96351707221736 5.04209648369799 5.5956714566386 5.45378239089003 5.11287215321239 5.29916785401357 0.259258739991166 0.258396400833412 0.264119436451068 0.259163531587373 0.263726001349411 0.269195039123311 0.256238561980196 0.268232644692904 0.279167996084775 0.267583645956892 0.272173080317768 0.258662081434690 0.256238561980196 0.25786860491566 0.267168477492720 0.256238561980196 0.260152616219128 0.266640746137083 0.263727886431936 2 2 + 14262061 14262832 14262545.455 14260500 14263069 + gene protein_coding_gene FALSE TRUE AT2G33700.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G51470.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE83255.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.061769857489977 0.728024640439656 0.481971607628104 1 -0.348511032862715 11.0846896114073 0.061769857489977 0.0414870807307903
AT3G49480_at 1.85366219130253 1.82125448304992 2.07741032273561 2.39530622114275 2.16927297911118 1.83624723272862 1.82328766212023 2.30979334792296 1.29144336266224 2.35916927793137 1.90481515942462 1.77033974752776 2.17482768407484 1.56063148460557 2.08220671846224 1.62098734321606 2.15970144384895 1.92343323140856 2.08221880425924 0.216211362422190 0.212425855149438 0.227259932879975 0.214389588497476 0.212425855149438 0.215509163567349 0.213301354789391 0.218667366114652 0.222877016223812 0.219825703543707 0.222779441183587 0.21472244168167 0.220278620342733 0.212425855149438 0.213228025707223 0.220527837991238 0.215770131438223 0.215488563682664 0.222068969371503 3 3 - 18353535 18354062 18353858.455 18353529 18354458 - gene protein_coding_gene FALSE TRUE AT3G49480.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G05080.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0781169022253773 0.727908592063048 0.482039830369767 1 -0.348592334377563 3.94106013827524 0.0781169022253773 0.116050151989419
AT4G27280_at 7.08817441623722 7.05961198367505 7.96514880009545 8.59505128421289 6.84191371151914 6.21676549247439 5.99392599934012 6.33020344554789 7.80755268772652 6.40188743189726 6.82593551290332 6.22141743120233 6.14280430336155 6.8568652937938 6.5212511876168 6.41563348709572 5.78062523505341 6.4249664880492 6.78619648428056 0.169731490503819 0.162959408804728 0.169856306873559 0.175610352108711 0.162959408804728 0.175727583313415 0.165668135790395 0.167440899563182 0.170802722883156 0.167075421582502 0.162959408804728 0.165307504743518 0.179979544506035 0.164727986248979 0.166694640783685 0.167590386579372 0.175092878201473 0.170782844557682 0.165837123496105 4 4 - 13663786 13664138 13663939.364 13663582 13664246 - gene protein_coding_gene FALSE TRUE AT4G27280.1 calcium-binding EF hand family protein similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to Avr9/Cf-9 rapidly elicited protein 20 [Nicotiana tabacum] (GB:AAV92890.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0934413468125643 0.727645813098254 0.482194335547827 1 -0.348776389724113 13.7099658426474 0.0934413468125643 0.164309527039172
AT3G44620_at 8.14937236186717 8.09404149781842 7.87537800734806 7.94744321561666 8.17596499539396 7.29349322925896 8.8083369632936 8.9040816342864 7.21006632805416 7.54395310346488 8.36191984311433 8.22199733087941 8.05833740807706 8.29597679180069 8.54256543754370 8.79130995718556 7.54586028838329 7.97610433680415 7.38053576180741 0.214334825548092 0.214334825548092 0.223335004237063 0.231909988084472 0.226643576851609 0.225042878204342 0.221851277518319 0.225732429383374 0.244116570609755 0.232552531525967 0.223331869685430 0.214334825548092 0.216252967277269 0.234640034534983 0.229747242568715 0.217973432602353 0.234628036676146 0.230461750321519 0.219864094217689 3 3 + 16205041 16206365 16205386.6 16204816 16206820 + gene protein_coding_gene FALSE TRUE AT3G44620.1 protein tyrosine phosphatase similar to Low molecular weight phosphotyrosine protein phosphatase [Medicago truncatula] (GB:ABE89130.1); contains InterPro domain Low molecular weight phosphotyrosine protein phosphatase; (InterPro:IPR000106) 0.0900928036846889 0.727612784087525 0.48221375766985 1 -0.348799519634523 15.9572359824432 0.0900928036846889 0.154414646783875
AT1G77600_at 4.55802998001221 4.64066744031477 4.70866948104603 4.48574435939423 4.48787166960792 4.44011207886030 4.61834263839309 4.29777155873044 4.40562623484195 4.30639448038493 4.74292392560829 4.73136904055198 4.30402425927097 4.53493677609258 4.24179655681375 4.94996487739644 5.21170180070197 4.18801682176307 4.734358083587 0.221284960922631 0.219296987726907 0.217107926944617 0.215041671646149 0.227522883589988 0.228712399129329 0.223066539427326 0.217534515424983 0.215023098678575 0.217396184940606 0.223385227883659 0.217755707027798 0.223936415902876 0.222103235334151 0.218394836314377 0.216744771186211 0.227090490651397 0.226454520357161 0.227545913404685 1 1|0 -|/ 29158337 29159601 29159088.429 29157642 29167856 - gene protein_coding_gene FALSE TRUE AT1G77600.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G47690.1); similar to hypothetical protein 26.t00005 [Brassica oleracea] (GB:ABD64989.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.0664309919340407 0.727212552780652 0.482449145192362 1 -0.349079722793736 9.07726016256796 0.0664309919340407 0.0695609479897931
AT3G18120_at 1.52632719633551 1.29494882079507 1.20814566021264 0.740227558377444 1.38325171418241 1.86211090183585 1.95941161489122 1.50850806438184 1.62862624681723 1.80486905380557 1.93570813319689 1.64507995781895 1.80591715977087 1.45270400899992 1.95606155269632 1.94625091042317 1.87281972602322 2.00771792395230 1.75053200279613 0.192639341512605 0.198465466256267 0.205299630410789 0.201516937456570 0.206102726886259 0.195609819993718 0.20910487782659 0.192530388227075 0.201498034880857 0.200552643599763 0.195148202462173 0.201686370296073 0.211519457667006 0.201454257297599 0.197280893326540 0.195857281000919 0.193751274617214 0.199361613673907 0.198286278355892 3 3 - 6210105 6210544 6210316.545 6210096 6210578 - gene protein_coding_gene FALSE TRUE AT3G18120.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17620.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0870458224891317 -0.727185250310658 0.482465205158651 1 -0.349098832279289 3.21326220275142 -0.0870458224891317 0.145314758188376
ATCG01070_at 8.88812005975408 9.77632561811583 9.49996107385805 9.9489870406199 9.07691717661335 9.06597745094389 9.25850395230121 9.6335452414369 9.82493156559238 10.2357706046530 10.472459764677 10.7519960063531 10.0651377010861 10.3199644190875 10.0850694130004 10.6840677867021 9.60321102477993 10.1868846433455 10.1774290781749 0.16561824836585 0.152576508649715 0.158041007360098 0.15707087270706 0.160316820642343 0.161735145124164 0.153664284458702 0.161098746209267 0.162817635175925 0.156272759941127 0.164778756635488 0.164774284651764 0.161279103277116 0.163402895793867 0.160441171315071 0.158715323385389 0.166530466777805 0.156823725288530 0.152576508649715 C C - 117815 118074 117943.8 117804 118109 - gene protein_coding_gene FALSE TRUE ATCG01070.1 NADH dehydrogenase ND4L Identical to NAD(P)H-quinone oxidoreductase chain 4L, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4L) (NADH-plastoquinone oxidoreductase chain 4L) (ndhE) [Arabidopsis Thaliana] (GB:P26289); similar to NADH dehydrogenase subunit 4L [Oenothera elata subsp. hookeri] (GB:NP_084753.1); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 4L; (InterPro:IPR001133); contains InterPro domain NADH dehydrogenase (ubiquinone), type 1; (InterPro:IPR003215) 0.100279364839503 0.727104787899747 0.482512537005575 1 -0.349155145598496 19.5687801655483 0.100279364839503 0.184066156635878
AT2G29560_at 6.23585502922344 6.66903396229395 6.43874366604918 6.35947202726371 6.75503845923857 6.39940912591545 6.90511103424988 6.36081605679188 6.54033573440661 6.42109811302244 6.86252034228303 6.75846951303531 6.46144816121429 6.45279904154474 6.71992817400168 6.52878699861592 6.44541145731241 6.70004870616823 6.2195039500966 0.151433029434516 0.152185071174728 0.152575400652760 0.152922653998155 0.153558361193873 0.148286415209482 0.15634636739566 0.162544615639694 0.156433279296773 0.157176275037347 0.154231144569326 0.145880727473571 0.155284787899080 0.147034430626785 0.152418814110340 0.153342983223642 0.160387071496520 0.151979986851280 0.153906292731258 2 2|0 +|/ 12655236 12656296 12655951 12653637 12656983 + gene protein_coding_gene FALSE TRUE AT2G29560.1 enolase, putative similar to LOS2 (Low expression of osmotically responsive genes 1), phosphopyruvate hydratase [Arabidopsis thaliana] (TAIR:AT2G36530.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06877.1); contains InterPro domain Enolase; (InterPro:IPR000941) 0.0839962078701726 0.726839535133491 0.482668591818498 1 -0.349340748621045 13.0203461610185 0.0839962078701726 0.135895545237796
AT3G23300_at 6.69443866288113 7.3105020441493 6.64503769813963 6.40300916439634 6.86948588610226 6.66149921111575 7.04365139311501 7.40651876652657 7.07123305625727 6.21571107048441 7.32256425646048 7.66845069314467 6.8344451480513 6.55132499702421 7.09168357846559 6.53402608755752 6.0066353276432 7.20260779921268 6.51327168729134 0.199235247067005 0.184796447552196 0.188660714784746 0.183841211862964 0.189587840805703 0.186692830462535 0.188790710298748 0.193851913652014 0.187835036902697 0.189954912786006 0.184569763280818 0.185229699133001 0.188775681136517 0.198019403934641 0.191403970593838 0.191789283866624 0.190963071901724 0.195490412587139 0.192606369006022 3 3|0 +|/ 8335138 8335817 8335579.7 8333155 8336153 + gene protein_coding_gene FALSE TRUE AT3G23300.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT4G14360.2); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47791.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE90857.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.0838122143977782 -0.726330182067344 0.482968344772016 1 -0.349696982860725 13.6300374402812 -0.0838122143977782 0.135496728111025
AT2G15630_at 1.45950582880354 1.92982645646004 1.85198999818275 1.88172210744208 1.79253273463354 1.76014143669083 1.95099313229918 1.63457829999257 1.28892333520171 1.70210588556542 1.33942639915034 0.924686602220808 0.93395660120696 0.751791349528699 0.735600339935635 1.27527616142109 1.28153539601071 1.41109609171099 0.926013007135783 0.206215798837292 0.187208768633016 0.192281858807210 0.194312509505286 0.187208768633016 0.19262690535163 0.188470606654841 0.205161694580456 0.195317477183045 0.198627348617719 0.200022736203850 0.201122410361031 0.188968865445060 0.202295016120018 0.189379293703059 0.195557952046945 0.191875360405204 0.199864998071281 0.193786738601035 2 2 + 6822894 6823425 6823166.273 6821603 6823486 + gene protein_coding_gene FALSE TRUE AT2G15630.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G01110.1); similar to Os04g0477200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053085.1); similar to OSIGBa0116M22.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66938.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE84479.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0730694925688416 -0.72617664351576 0.483058724468895 1 -0.349804321413885 2.97633717945429 -0.0730694925688416 0.098390827350407
AT4G19070_at 5.22743149046354 4.7026672126506 5.24375983606776 4.26188335080008 5.42515038058725 5.01985332456033 5.43781809749943 4.7776283525072 4.7596736531362 5.16726367664126 4.83108555384208 5.02145929214802 5.1748305455492 4.91774429475932 5.01599294429863 5.06644904105127 4.92938026675451 5.16821555127889 4.26035477082048 0.220134541769264 0.215220713241943 0.219293488129228 0.225635681850306 0.21856855710807 0.221303866931778 0.219500644821463 0.217011007717315 0.212009446749335 0.210489968503044 0.212022960077356 0.213207837853647 0.209849217309031 0.213716349326844 0.218934959233153 0.216378063462576 0.210476752517578 0.211157674167474 0.209525591924626 4 4|0 -|/ 10447147 10447680 10447503.889 10446351 10448201 - gene protein_coding_gene FALSE TRUE AT4G19070.1 cadmium-responsive protein / cadmium induced protein (AS8) Identical to Cadmium-induced protein AS8 [Arabidopsis Thaliana] (GB:P42735); similar to putative cadmium-induced protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19956.1); similar to Os07g0143600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058878.1) 0.118911377033957 0.726120268831194 0.483091911777911 1 -0.349843727735457 9.88439503218013 0.118911377033957 0.234715666862667
AT3G46720_at 2.1144608734877 2.36218670217731 2.08964140501956 2.67030528888357 2.23664389588445 2.60734283748025 2.24606001388357 2.15939111136557 2.47636831420586 2.65878709850539 2.82364825982388 2.11868880237834 2.59081396566594 2.39286579146453 2.70487678073953 2.17133263192555 2.72122291625125 2.27832237363933 2.34395257603376 0.205385303257054 0.201050675989551 0.208280204615502 0.198312592499994 0.201476130596676 0.197285519345984 0.201978878194094 0.206079387651006 0.203199417650014 0.194593301332210 0.197732550131125 0.211762324180188 0.194593301332210 0.211953221625675 0.201985362740128 0.198546954146377 0.194593301332210 0.208887977225948 0.198105217125271 3 3 - 17221932 17222424 17222187.455 17221840 17223333 - gene protein_coding_gene FALSE TRUE AT3G46720.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46680.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46690.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0813220627880668 0.72593941684343 0.483198387392078 1 -0.349970126015915 4.79488273426494 0.0813220627880668 0.127576367204782
AT3G10470_at 1.97337135167822 1.80224512970939 1.92971590682737 2.02278409916987 1.74633809632804 2.11345137806973 1.60590556043918 1.82332096405416 1.97350330380598 2.13871347851477 2.14622633142156 1.81989259426765 2.01174221418399 2.20203344285991 2.18968223768823 1.99411529977737 1.84060710667776 2.26527921270979 2.10656044383 0.222170476117811 0.217362081654891 0.221389559876765 0.22916379140619 0.219452005314860 0.217362081654891 0.22365880505873 0.224033635385075 0.235726528071813 0.220336452384950 0.218806979998144 0.219002903199263 0.217936701515079 0.221012075044783 0.223156950037459 0.223472128046161 0.225214883168721 0.218076375527662 0.218714189278982 3 3 + 3261030 3261463 3261245.545 3260356 3261849 + gene protein_coding_gene FALSE TRUE AT3G10470.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G04390.1); similar to PEThy;ZPT2-6 [Petunia x hybrida] (GB:BAA19111.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.0688165907632726 0.725876074431593 0.483235683331816 1 -0.350014389611849 3.94295308428376 0.0688165907632726 0.08116752470716
AT2G07520_at 0.826233572429837 0.670846258102638 0.829668357400892 0.78969843316864 0.181912000198659 0.872640751489326 0.804492822891749 0.580396923276584 0.508125834621779 0.981975767548894 0.86109819412487 0.419586633021551 0.587017014809468 0.666730266352659 0.515598377695435 0.880409205490012 0.78248254014213 0.711776280902085 0.878010340070958 0.206793296673956 0.204736477072402 0.205599706097514 0.210755811801362 0.207835871092256 0.205622245668116 0.206637953952318 0.209452276679817 0.209589544155039 0.206745982661029 0.207950449257359 0.209938957355805 0.208482424104970 0.206890133963803 0.214956224535466 0.206556279023418 0.206674311524105 0.206860535882397 0.228410434498865 2 2 + 3135253 3135702 3135498.182 3135109 3135777 + gene protein_coding_gene FALSE TRUE AT2G07520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15310.1); similar to Protein of unknown function (DUF635), putative [Medicago truncatula] (GB:ABE90282.1); contains InterPro domain Protein of unknown function DUF635; (InterPro:IPR006912); contains InterPro domain Bacterial adhesion; (InterPro:IPR008966) -0.0816479209787116 -0.725798335193898 0.483281458547168 1 -0.350068708936689 1.42821512061037 -0.0816479209787116 0.128698228996448
AT3G21740_at 3.45388315741857 3.70363022716946 3.11500872533349 3.30199725757686 3.24023151803204 3.11497386523699 3.02349169733228 2.73362237703802 3.10920806101912 2.94305895097875 2.83102067567455 2.56018002168510 2.70432605499554 2.8733295204699 3.35401137925937 2.75739025769425 3.23544243718016 3.22361512338364 3.07499267953250 0.178874408612870 0.185168746332718 0.180017041049661 0.177475390497346 0.183447572677335 0.184547945820024 0.174786010233620 0.175399314297355 0.183675323202974 0.180812557799491 0.183314725834364 0.174539963098074 0.177318255508562 0.175989022299549 0.174539963098074 0.17684634151728 0.185540550497241 0.189757972346551 0.186516298065307 3 3 - 7662568 7663085 7662838.091 7662368 7664017 - gene protein_coding_gene FALSE TRUE AT3G21740.1 APO4 (ACCUMULATION OF PHOTOSYSTEM ONE 4) ACCUMULATION OF PHOTOSYSTEM ONE 4 Identical to APO protein 4, mitochondrial precursor (APO4) [Arabidopsis Thaliana] (GB:Q9LSZ0;GB:Q8GYN3); similar to APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) [Arabidopsis thaliana] (TAIR:AT5G57930.2); similar to H0525G02.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86305.1); similar to Os04g0628000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053956.1); similar to OSIGBa0117N13.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86368.1); contains InterPro domain Protein of unknown function DUF794, plant; (InterPro:IPR008512) -0.0678047432893597 -0.725466002653047 0.483477176331561 1 -0.350300863081575 6.20327201862701 -0.0678047432893597 0.0768199013829656
AT1G62410_at 1.6136500332915 1.64583827847448 1.49245859920395 1.65369746283813 1.25103512756587 1.72492228203249 1.85157340244506 1.54018145194425 2.10242736811038 1.71256018021032 2.37557091202173 2.08541734213058 2.00896266607891 2.12454823430268 2.48257896548106 1.99975328751947 1.56463785134551 1.75157656202656 2.37944195847792 0.227915425283157 0.231194778774721 0.234382361723218 0.240328620383342 0.237417537859823 0.236189360887513 0.234414093714388 0.231553875897313 0.240249073754857 0.230972378629822 0.239500268490626 0.246893382048236 0.22850291572325 0.239569487304991 0.253798787850262 0.237566927015828 0.234254802088925 0.235338682982124 0.228546609861490 1 1 + 23096661 23097503 23096943.727 23096580 23097534 + gene protein_coding_gene FALSE TRUE AT1G62410.1 MIF4G domain-containing protein similar to eukaryotic translation initiation factor 4F, putative / eIF-4F, putative [Arabidopsis thaliana] (TAIR:AT5G57870.2); similar to Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 [Medicago truncatula] (GB:ABE79486.1); similar to Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 [Medicago truncatula] (GB:ABE78808.1); similar to Os02g0611500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047407.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890) -0.0739807658074715 -0.725318238216035 0.483564213774418 1 -0.350404054615566 3.65363986133090 -0.0739807658074715 0.102170869151399
AT3G50010_at 2.5069415893353 2.16238580800104 2.45229204889759 2.21186656309539 2.13427327200873 2.31134350342980 2.03385063830675 1.57174683311138 3.12312525776696 2.42652051660274 2.96156942581878 2.01165351053559 2.52583886850228 2.64581838166676 2.48419175241616 2.48204346403641 3.05506417692988 2.80447640309254 2.48002322460735 0.208465400225689 0.204113408943822 0.208569005386057 0.204491361604965 0.206547263754887 0.206120956911931 0.204177847966768 0.205441892592273 0.206599895067717 0.207704148789616 0.202173264555752 0.204226088469141 0.208704118365228 0.202897735725127 0.210257194417428 0.210764763859072 0.202469959355698 0.201244164059568 0.208266512903239 3 3 - 18548234 18548782 18548562.545 18548166 18550584 - gene protein_coding_gene FALSE TRUE AT3G50010.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26380.1); similar to MEE53 (maternal effect embryo arrest 53), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G10560.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.076744147275854 0.72498521791693 0.483760407796676 1 -0.350636550453948 4.82203169745682 0.076744147275854 0.112341257036721
AT4G21680_at 0.60711917609126 0.317652372280903 0.699296203927686 0.757064038905739 0.310605394275585 0.514208375689386 0.697600209764552 0.516263518891983 0.416914175735899 0.684311893834567 0.47386716141964 0.416353513553909 0.312056887336793 0.563983267927698 0.62568392021504 0.311546589879998 0.569825151652245 0.237904494909172 0.719722242610535 0.201818285188591 0.200395822948068 0.200663301617701 0.202200666680904 0.207382103480848 0.203252641288495 0.200626081978188 0.204147864882715 0.200820495340411 0.203360873143542 0.200572227442084 0.203580686673568 0.205619210974678 0.207157725706537 0.201618170435612 0.207996625294568 0.200395822948068 0.207062230928598 0.206529934254906 4 4 - 11517569 11518126 11517849.636 11517365 11519777 - gene protein_coding_gene FALSE TRUE AT4G21680.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G32450.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32535.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE93051.1); similar to transporter, major facilitator family, putative [Medicago truncatula] (GB:ABE88005.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.0662227317113818 -0.724983460862385 0.483761443070444 1 -0.35063777687445 1.07541885827279 -0.0662227317113818 0.0695381192632923
AT2G46980_at 0.363454334961817 0.456708075024088 0.520645668761758 0.107883538789598 0.0590234902172093 -0.149868371526151 0.225972701032696 0.326325849575957 0.446072817709187 0.334664568038610 -0.0493308623859124 0.451672042826728 0.875794631735154 0.290626973642875 0.212349503688507 0.553954044804742 0.377068790263131 0.323721348055826 0.14718895242042 0.213326653015471 0.203777996158226 0.203283506879038 0.202065298811576 0.203501038498850 0.205615477414339 0.206513826003322 0.2066257619281 0.213085321218195 0.210578558396087 0.210539331127181 0.205611952793610 0.219895074416629 0.211773005031487 0.208547645046283 0.204702441407555 0.214987399454669 0.206855086676680 0.211777317884326 2 2 - 19308949 19309475 19309225.364 19306561 19311240 - gene protein_coding_gene FALSE TRUE AT2G46980.1|AT2G46980.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to UNCoordinated family member (unc-89) [Caenorhabditis elegans] (GB:NP_001020990.1); similar to UNCoordinated family member (unc-89) [Caenorhabditis elegans] (GB:NP_001020984.1); similar to Os10g0405500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064559.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33793.1); similar to SD07741p [Drosophila melanogaster] (GB:AAK93551.1); similar to Os10g0405500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064559.1); contains domain Ribosome recycling factor, RRF (SSF55194) -0.0692604394492802 -0.724902558051747 0.483809113287536 1 -0.350694243971706 0.583163580088765 -0.0692604394492802 0.0834933427898994
AT4G39660_at 7.28975347371792 7.47630077885966 7.19094323537721 7.15927508226246 7.34316247199146 7.02606825984813 7.595690834206 7.4541154018023 6.83818787824552 7.27727098824298 7.24374077600126 7.40275609625689 7.00883502637196 7.23455807460243 7.28331191486711 7.27602798097374 7.23032867865165 6.97501076297268 7.07864331865686 0.198157987893499 0.201471094914598 0.198157987893499 0.20474741327868 0.205561210408263 0.210071172196812 0.20942611792071 0.198157987893499 0.208028080513664 0.211685783518966 0.205347513626113 0.204894207397594 0.198157987893499 0.218141088344551 0.205495935685062 0.203637190611446 0.208033665323046 0.206868038100474 0.201887713788763 4 4 + 18408245 18409227 18408642.091 18406763 18409558 + gene protein_coding_gene FALSE TRUE AT4G39660.1 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, Identical to Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 1) (AGT2) [Arabidopsis Thaliana] (GB:Q940M2;GB:Q9SU41;GB:Q9SWE2); similar to alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative [Arabidopsis thaliana] (TAIR:AT3G08860.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III [Medicago truncatula] (GB:ABE94503.1); similar to Os03g0171900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049115.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) -0.0659912121606141 -0.724877620065687 0.483823808039224 1 -0.350711648596654 14.4526746383676 -0.0659912121606141 0.068437619506043
AT2G47710_at 10.9116087362383 11.1890207042163 11.4057323191562 11.5970412549973 11.3983773986201 11.3846881526274 11.3966321934026 11.6311719893897 11.2324828877679 11.1362292660862 11.0543364492710 10.9469531965950 11.2084023906172 11.0986256791953 10.8366790907761 11.3892635092989 11.3294782685670 11.1405822998651 11.1021207672679 0.0817063462994462 0.0766185329414292 0.0789795066978416 0.079098508847779 0.0781635561748101 0.0766185329414292 0.0781029691965617 0.0780995904529555 0.0858329740144472 0.077255891293655 0.0793840758336627 0.0771294932647593 0.0767086957208948 0.0793888946694153 0.0776697301201205 0.0770072106490645 0.0847384109795092 0.0769044898392756 0.0791548040775652 2 2|0 -|/ 19562146 19562985 19562644 19561904 19563135 - gene protein_coding_gene FALSE TRUE AT2G47710.1 universal stress protein (USP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49050.1); similar to fiber protein Fb19 [Gossypium barbadense] (GB:AAR07598.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.0664735895105382 0.724256043048214 0.484190162765218 1 -0.351145282982437 22.5055263023629 0.0664735895105382 0.071090051333778
AT2G05900_at 1.81372622274184 1.58216547361267 1.74824323728190 1.91307191327424 1.57306300097613 1.32163834963453 1.47113749778051 1.93605467699156 1.68736109307603 2.07691270392878 1.56948672306947 1.58339776223065 2.03881889297885 1.38212451229375 1.45019402297324 1.61126720489474 1.64170515153922 1.81760075346142 1.40643487786508 0.206994099671543 0.200644350870716 0.209910544546941 0.200644350870716 0.200644350870716 0.200644350870716 0.201339684966708 0.201907866154835 0.200644350870716 0.209592898047584 0.207465851327936 0.206166266523609 0.205435300879544 0.206160859271326 0.208645474376860 0.208619707119977 0.203870300117103 0.210218797721024 0.213179419121953 2 2 + 2257365 2257766 2257594.273 2256967 2257905 + gene protein_coding_gene FALSE TRUE AT2G05900.1 SET domain-containing protein / YDG/SRA domain-containing protein Identical to Putative histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH10 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 10) (H3-K9- HMTase 10) (Suppressor of variegation 3-9 homolog protein 10) (Su(var)3-9 homolog protein 10) (Protein SET DOMAIN GROUP 11) (SUVH10) [Arabidopsis Thaliana] (GB:Q3EC60); similar to SUVH3 (SU(VAR)3-9 HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT1G73100.1); similar to SET-domain-containing protein [Nicotiana tabacum] (GB:CAC67503.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Pre-SET; (InterPro:IPR007728) -0.0742560114248705 -0.723595577322674 0.484579626625659 1 -0.351605680200584 3.35008451464674 -0.0742560114248705 0.103854602585631
AT1G33660_at 3.26105406968151 2.69187211390979 3.02434855265174 3.00516405099826 2.35700388896863 2.41490241942103 2.94728383708343 2.66864791948043 2.93094406641418 2.92913329953675 3.11979056007657 2.69515532877117 2.34961064373931 2.21192249447916 2.99373642150084 2.55943649483028 2.92379464457435 3.01649074423679 2.2214746219793 0.198945882403606 0.194580131847075 0.195315082282654 0.196089712983481 0.19085895646357 0.198835467199690 0.188914738542443 0.199197576807198 0.18988203811679 0.194211635161858 0.188034545207752 0.195000070749436 0.190672993652170 0.190877993147797 0.195474511469961 0.193154884618377 0.193058222805300 0.188905073515018 0.193485572201493 1 1|0 -|/ 12197737 12198278 12197979.3 12197681 12198302 - gene protein_coding_gene FALSE TRUE AT1G33660.1 peroxidase family protein similar to APX1 (ASCORBATE PEROXIDASE 1, MATERNAL EFFECT EMBRYO ARREST 6) [Arabidopsis thaliana] (TAIR:AT1G07890.7); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60795.1); similar to ascorbate peroxidase [Glycine max] (GB:AAD20022.1); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60794.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.0759841265731158 -0.723547354924277 0.484608070039272 1 -0.351639280225318 5.51008102110909 -0.0759841265731158 0.110175677900239
AT2G23530_at 1.81530671387541 2.21072023386478 1.86443354369418 1.88267136025879 1.52726324166854 1.65714392596236 1.69788056449128 2.04879543043460 1.96077530764204 2.45928693900261 2.01006554899085 1.98468089329885 2.54683655962315 2.12961906883762 2.38353867528395 2.37407027710573 2.25422419027834 2.11002206569463 2.05183733416076 0.181367629031178 0.183132251578466 0.187442897665208 0.180589430876619 0.186320634040038 0.187390960416079 0.184776069854321 0.184011788877159 0.184543034596379 0.196338136331626 0.185904280841744 0.181132934926666 0.183656311166796 0.195458943933767 0.184855402268839 0.184994742253986 0.189955890642412 0.190402417778871 0.187553214805724 2 2 - 10027773 10028278 10028018.727 10027732 10029944 - gene protein_coding_gene FALSE TRUE AT2G23530.1 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37110.1); similar to Os11g0568300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068113.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56615.1); contains domain no description (G3D.3.30.40.10) -0.0717327090749385 -0.723413321996065 0.484687133213502 1 -0.351732660037965 4.02874288686004 -0.0717327090749385 0.094262337663893
AT1G73730_at 5.10067760352986 5.56883965121594 5.0402805035588 5.39320001879105 5.46282763094402 5.43510993429316 5.47884709261639 5.86258576527831 4.75795090911544 5.20497134480991 5.1938017482087 5.74644301820409 5.36143839802337 5.41299921636874 5.00883467483241 5.31030456669827 5.23699613461802 4.72697598221248 4.80157408076999 0.223367195989734 0.222898289418502 0.225259941219537 0.217943656595361 0.220924056380530 0.241870541466886 0.227058755509290 0.222489109646836 0.240498589109944 0.217943656595361 0.219477591932604 0.217943656595361 0.220150833681961 0.221493175584299 0.217943656595361 0.217943656595361 0.224603389277669 0.225352544658843 0.228466609249401 1 1 - 27734132 27734579 27734337.273 27733692 27736175 - gene protein_coding_gene FALSE TRUE AT1G73730.1 EIL3 (ETHYLENE-INSENSITIVE3-LIKE3); transcription factor Encodes a putative transcription factor involved in ethylene signalling. Isolated DNA binding domain has been shown to bind DNA in vitro. Identical to ETHYLENE-INSENSITIVE3-like 3 protein (EIL3) [Arabidopsis Thaliana] (GB:O23116); similar to EIN3 (ETHYLENE-INSENSITIVE3), transcription factor [Arabidopsis thaliana] (TAIR:AT3G20770.1); similar to EIL1 [Prunus persica] (GB:ABK35085.1); contains InterPro domain Ethylene insensitive 3; (InterPro:IPR006957) 0.0791712164503076 0.723338635556766 0.484731192621125 1 -0.351784686798155 10.5034075228422 0.0791712164503076 0.121354578583573
AT3G06610_at 7.36079094977872 7.50045660651233 7.53419090412053 7.56823367103438 7.56716681656633 7.35679552008595 7.93422948523981 7.88905901042053 7.46337248620666 7.13670615350695 7.18684421294801 7.65040206072278 7.23700103982846 7.08599327651424 7.84836640883947 7.36772427326092 7.43395298677146 6.75887690825796 7.24053837894956 0.15500289988525 0.157985668265187 0.160924833992448 0.165516426125260 0.160180962369192 0.164425148605845 0.156178985890689 0.170877456196445 0.165506716988250 0.156213719731083 0.157432818023170 0.154038023601698 0.162340271589683 0.165270467478672 0.159140101749745 0.154038023601698 0.160575566222304 0.165705486405873 0.161646159068267 3 3|0 +|/ 2060857 2061824 2061385.889 2060744 2062073 + gene protein_coding_gene FALSE TRUE AT3G06610.1 DNA-binding enhancer protein-related similar to MGC85228 protein [Xenopus laevis] (GB:AAH78471.1); similar to Os03g0832300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051800.1) -0.0617989060154298 -0.723138728639195 0.484849134937624 1 -0.351923918633765 14.8895407798601 -0.0617989060154298 0.0447813376082099
AT4G38270_at 5.90310232249133 5.78262804520561 5.88217263163006 5.90343172177045 5.98518370141662 5.98330871461952 5.46564444440803 5.6032176288837 5.38242971769887 5.56706290477989 5.19527698533736 5.16876651804623 5.43746330721251 5.49985004866427 5.49238123145826 5.513663996338 5.57040992154658 5.31338649949251 5.63547609715079 0.205063918135504 0.209148412524451 0.221549576076706 0.204570357820941 0.210459591545806 0.232599194849278 0.20879243072503 0.202471950912983 0.217849699216571 0.204938604277918 0.208214087242473 0.209686957573515 0.208062556030376 0.233779854651465 0.204994991078547 0.206717029206820 0.215198042795967 0.234557843386045 0.202471950912983 4 4 + 17940727 17941375 17941143.455 17938366 17941552 + gene protein_coding_gene FALSE TRUE AT4G38270.1 GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT1/LGT1 (Galacturonosyltransferase 1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G61130.1); similar to putative glycosyl transferase protein A [Oryza sativa (japonica cultivar-group)] (GB:BAD61814.1); similar to 68 kDa protein [Cicer arietinum] (GB:CAB81547.1); similar to Glycosyltransferase QUASIMODO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47337.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.0602264945403879 0.722987906424138 0.484938129715753 1 -0.352028940834329 11.2771975113307 0.0602264945403879 0.0318608144998850
AT2G46300_at 1.55707939404854 1.57425869768944 1.46052388318444 1.64159192864132 1.41268102814393 1.60621639270619 1.65726700738008 1.42101410486058 1.88353781285296 1.58419795652616 1.28434621136308 1.37318618355827 1.29003924481743 1.71136134890939 1.59387893211988 1.45935221241872 1.70680075718320 1.88928259730028 1.46834646736618 0.223298349061670 0.220537644556942 0.218955521259646 0.219001663838263 0.217205765833979 0.218780987399498 0.218509408204007 0.225101605624734 0.230907273422303 0.218823199752666 0.224674822227692 0.217205765833979 0.220649822552607 0.219528408672409 0.221730516730402 0.222836633818140 0.224336583549446 0.219388814993870 0.222385999105103 2 2 + 19015645 19016136 19015887.182 19015364 19016631 + gene protein_coding_gene FALSE TRUE AT2G46300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01110.1); similar to Os02g0261000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046485.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD20046.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.0644906512243373 -0.722967499527779 0.484950171869763 1 -0.352043149274529 3.13327489535209 -0.0644906512243373 0.0615140899702524
AT1G10320_at 5.58187033475776 5.36398440534405 5.62010963430858 5.32909841280073 5.75506490344138 5.34111860373126 5.14170435483610 4.96659613069385 5.28701894852593 5.69459543034549 5.66331994299729 5.36629485889226 4.97826580421892 5.49901664194113 4.82000722438929 5.73358505172849 5.42305039812749 5.14027890352438 6.18452154798679 0.200515787387374 0.197990773661902 0.197994757594272 0.199316839893366 0.205592161867513 0.204021857640836 0.204475356025284 0.198288077998354 0.197691266781483 0.196967162529132 0.204983807687162 0.200763237029924 0.204390593648968 0.196460025580736 0.199710611190922 0.200717475518102 0.210158652281689 0.200746981137236 0.201741163786500 1 1 - 3384169 3384707 3384404.091 3384166 3388375 - gene protein_coding_gene FALSE TRUE AT1G10320.1 U2 snRNP auxiliary factor-related similar to ATU2AF35A, RNA binding [Arabidopsis thaliana] (TAIR:AT1G27650.1); similar to RNA-binding re (GB:ABE91954.1); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.073129436781389 -0.72249442764415 0.485229384497924 1 -0.352372427452813 10.9124546785793 -0.073129436781389 0.10003940294782
AT2G14810_at 1.86491704741768 1.35467375133727 1.65666559747856 1.91292639577449 1.61144685491956 1.53046222887592 1.51120612763747 1.53259772528211 2.31524372190463 1.98556416172303 1.67875541095940 1.83694293021899 1.98344453508824 1.97058360738355 2.25048824870037 1.41800505724705 1.44708021301243 1.88887277618144 1.90157939684035 0.179401517665242 0.184427501205703 0.180582634869147 0.178881444155360 0.178031755750966 0.188927188130554 0.178920343631452 0.180247547105201 0.189863512910741 0.180849374515911 0.182260711322859 0.177333012734873 0.182864079994344 0.182670717915399 0.178317031741455 0.185217830292712 0.19736073042922 0.179492469072779 0.184026062341067 2 2 - 6364548 6365528 6365227.636 6364547 6365552 - gene protein_coding_gene FALSE TRUE AT2G14810.1 unknown protein -0.0730821115651147 -0.722470422595111 0.485243555213596 1 -0.352389130809422 3.56022897817618 -0.0730821115651147 0.0998682748635374
AT4G24740_at 8.98576984504172 8.74853133711138 8.93944801759044 8.78694621405577 9.33199278151474 9.05664335902935 9.13958969978402 8.95967985541508 9.07275833767139 9.14571228589344 8.96383790180137 8.98258704300942 8.98573026156236 8.96987793919645 8.7552822113674 9.10836003875952 8.7273464480702 8.59075226317098 9.0516230816753 0.102655893600130 0.105640701255084 0.107601930026413 0.104307578898323 0.108954576750016 0.113075498587760 0.108706666847017 0.104441695581449 0.111603825624418 0.107665226034894 0.103174733658239 0.101695357270043 0.110970375932036 0.104792010329815 0.107458371051955 0.104300186128475 0.119806381302140 0.109189150500221 0.106806741532342 4 4|0 -|/ 12754746 12755519 12755033.667 12754539 12757796 - gene protein_coding_gene FALSE TRUE AT4G24740.1|AT4G24740.2 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. Identical to Serine/threonine-protein kinase AFC2 (EC 2.7.12.1) (AFC2) [Arabidopsis Thaliana] (GB:P51567); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase MK5 [Mesembryanthemum crystallinum] (GB:AAF40430.1); similar to PK12 protein kinase [Nicotiana tabacum] (GB:AAC04324.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to Serine/threonine-protein kinase AFC2 (EC 2.7.12.1) (AFC2) [Arabidopsis Thaliana] (GB:P51567); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase MK5 [Mesembryanthemum crystallinum] (GB:AAF40430.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.067097281501654 -0.722154069497075 0.48543032942329 1 -0.352609211028733 17.9813266379164 -0.067097281501654 0.0749795686118078
AT4G33440_at 1.62622229758728 1.86286881453457 1.67346221940011 1.66973055965559 1.61508841372325 1.28959835538308 2.59799665245164 2.11962841239012 2.31973316838860 1.85858700222893 2.60524463249952 2.41814883280003 2.34992729426405 2.29058534333565 2.14444530294532 2.57120056183485 2.07909958581497 2.58484300334120 1.94527533910058 0.186174502754097 0.187465763978364 0.181494720782095 0.181494720782095 0.181494720782095 0.183492954407740 0.183228889483491 0.197584145641342 0.188281847465419 0.197454536979052 0.186874214095805 0.198206973733521 0.188132223879927 0.185696671546788 0.192869856364264 0.182189251860524 0.187116418869474 0.184972997499147 0.184554325142812 4 4 + 16094192 16094671 16094449.909 16091943 16094961 + gene protein_coding_gene FALSE TRUE AT4G33440.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G62110.1); similar to Os03g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051812.1); similar to glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99735.1); similar to Os08g0107300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060796.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.075235420417658 -0.72167114528719 0.485715532616079 1 -0.352945003681172 4.01764212706261 -0.075235420417658 0.108182760103708
AT1G15320_at 0.709799188677246 0.43259427782499 0.546813489478392 0.489126325435146 0.860583297415218 0.794847614790823 0.989335803377668 0.77177577465364 0.510467458230975 1.07696133202936 0.634244407997387 1.15034576768115 1.05968868814140 0.553130880575747 1.29562883956353 1.04365044971412 1.16350779025290 1.84951267187662 1.14690310939204 0.199634203117857 0.213618585773177 0.205797170531403 0.203094717225446 0.199634203117857 0.203933559816678 0.199665445838934 0.205399577911761 0.201773203815851 0.216077700258189 0.207470041228466 0.200621008558143 0.202925573838550 0.199634203117857 0.2041119253077 0.201355431946224 0.207480352593396 0.202837781873359 0.201639194152857 1 1 - 5272494 5273184 5272904.182 5272253 5273694 - gene protein_coding_gene FALSE TRUE AT1G15320.1 unknown protein 0.0646180705355363 0.721669370126786 0.485716581173383 1 -0.352946237633353 1.70193829821971 0.0646180705355363 0.0628319321515249
AT1G47810_at 0.684580866733512 0.304703658158755 0.905630156992175 0.843524160614784 0.67624798111428 0.878731697590726 0.651624394338248 0.693176596502295 0.597327842260306 0.363148056808993 0.574585154434948 0.0409392534356652 0.365942354461434 0.291442157729502 0.615387547227271 -0.0201048691979799 0.891167971068914 0.0499582981905452 0.417598234482707 0.178381514861656 0.174336353237038 0.174336353237038 0.180028936497878 0.174336353237038 0.176921917510045 0.181797785099625 0.178210307335869 0.184085786473739 0.182333371559490 0.176729898313608 0.176316784319632 0.174459015541116 0.178381727719876 0.187071989750679 0.176714133691845 0.174336353237038 0.178522269633099 0.18056677816886 1 1 + 17606436 17606975 17606735.273 17605944 17606999 + gene protein_coding_gene FALSE TRUE AT1G47810.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47800.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0671594045231202 0.721367740920898 0.485894768781164 1 -0.353155866837056 1.11003882797366 0.0671594045231202 0.0756092619164408
AT1G28030_at 1.89776807466117 1.71608042959533 1.99898382406575 2.05322168681283 1.76711132697691 1.57894104121638 1.74063510160608 2.03632535069316 2.03204095496363 2.18564412735884 1.67825616172505 1.92993396164710 1.91615808019902 1.53650881442241 2.38205276725842 1.81231005896633 2.31996776708421 2.18294771723410 2.09157030322565 0.217625185645170 0.219304847301054 0.213733367777041 0.218413736588826 0.216910317478367 0.213733367777041 0.215127562176132 0.216670752601592 0.232472135470632 0.225129304213390 0.213733367777041 0.213733367777041 0.219257126717737 0.217553267863383 0.216565079990761 0.214786520551983 0.219039966012673 0.213733367777041 0.213733367777041 1 1 + 9772741 9773302 9773065.545 9771780 9773332 + gene protein_coding_gene FALSE TRUE AT1G28030.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G52820.1); similar to Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD33293.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0657279909099643 -0.720839211393704 0.486207095299178 1 -0.353522998858852 3.88505937674501 -0.0657279909099643 0.0689602589489406
AT4G00220_at 1.90805588787464 1.76508098078280 2.03783630216865 1.99752870897797 1.61277925690367 1.5714221559306 1.69772159538418 1.81956771336935 1.64368800900107 2.11825831690393 1.68920861834654 1.72942704034719 1.73954857904888 1.71177838237845 1.72912353007151 1.99605739337943 1.73885061197450 1.25787244844363 1.71824738754496 0.228513700525185 0.230746369016971 0.228792474925457 0.235546763044185 0.235860183518516 0.226928408519887 0.234726464309057 0.230258789882584 0.234064807472353 0.238418084507651 0.225041183699281 0.232038603473472 0.235614580829833 0.235778401554575 0.227051288155561 0.226773760498502 0.227523039752708 0.225041183699281 0.230020010587772 4 4 + 90301 92053 91606.182 90036 92237 + gene protein_coding_gene FALSE TRUE AT4G00220.1 LOB domain protein 30 / lateral organ boundaries domain protein 30 (LBD30) Identical to LOB domain-containing protein 30 (LBD30) [Arabidopsis Thaliana] (GB:O81323); similar to LOB domain protein 18 / lateral organ boundaries domain protein 18 (LBD18) [Arabidopsis thaliana] (TAIR:AT2G45420.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAL77143.1); similar to Os03g0246900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049546.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.060231425337704 -0.720350758790411 0.486495849246323 1 -0.353862076477382 3.56410635683169 -0.060231425337704 0.0340101563626028
AT1G49830_at 1.58125776937690 1.20801046915937 1.54962253841830 1.53966527747959 1.28389288899380 1.38008408536459 1.57855798669602 1.21961340950302 1.72797818002602 1.92409584113328 1.65327410182125 1.68463568419367 1.41077335737449 1.64665804068162 1.78582940198578 1.46568264999035 1.48222965542417 1.72073475641957 1.71489339759604 0.189849717086507 0.193599210167451 0.191566335278699 0.188733962305766 0.188984999411197 0.189277750707219 0.189126551802652 0.193080171872423 0.203565916246376 0.189005769672608 0.191229798470523 0.192589664474588 0.192206007711512 0.191215312060449 0.194778851118932 0.192713791351131 0.19885917431611 0.192943288614660 0.193821432034706 1 1 - 18448858 18450266 18449790.273 18448779 18450327 - gene protein_coding_gene FALSE TRUE AT1G49830.1 ethylene-responsive protein -related similar to ethylene-responsive protein -related [Arabidopsis thaliana] (TAIR:AT3G19500.1); similar to ER33 protein [Lycopersicon esculentum] (GB:AAD46413.1); similar to Os03g0759700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051340.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) -0.0706528223592563 -0.720302457793621 0.486524408648452 1 -0.353895595153691 3.11519622590969 -0.0706528223592563 0.0911632931956041
AT1G02700_at 3.19488438953795 3.29883977643245 3.18046497983824 3.09834121425266 2.53396697933595 2.91387961368653 2.99095519598558 3.15876774836373 3.16184348658718 3.36612735874532 3.71311132225984 3.02374060363305 3.35402258018094 3.3579911852418 3.59685336663584 3.16703748999612 3.26649258048899 3.57120721612319 3.33043664301391 0.210743098346764 0.207529036885239 0.205318944535429 0.204866902499111 0.197581109667262 0.214664444825507 0.205466802424284 0.210337449722082 0.202882999835412 0.198034158456545 0.198754564478706 0.202149483191272 0.201077234011907 0.199720058841779 0.201253684824969 0.196762247532251 0.214256156247292 0.211434284751920 0.198164704327244 1 1 + 588511 589173 588929.818 588329 589480 + gene protein_coding_gene FALSE TRUE AT1G02700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02140.1); similar to hypothetical protein MtrDRAFT_AC145329g27v1 [Medicago truncatula] (GB:ABE91001.1) -0.0670136835902087 -0.720188837786998 0.486591593942625 1 -0.353974434232386 6.37998392343852 -0.0670136835902087 0.0754418499307139
AT3G26030_at 8.33626211320722 8.80176040058899 8.25655639047069 8.57270491932475 9.59139189613117 8.82382289012425 9.17500174914465 9.3082267646984 9.01728095170554 8.92050663120692 9.07547082233266 8.78539399779402 9.09304094071046 9.00064732431265 8.38363792009379 9.08661290731461 8.9275617883755 8.9094831122134 9.06178137969851 0.149997775480142 0.145714915537161 0.162045510535142 0.152844037597639 0.145714915537161 0.160595406128055 0.152591035490185 0.146466279258740 0.145714915537161 0.156857988451696 0.155057269343437 0.150895129300181 0.146438936048115 0.158115482200404 0.152588402130621 0.148791535872119 0.162404143956118 0.155907303638454 0.148262779764074 3 3|0 +|/ 9519829 9520341 9520042 9518550 9520796 + gene protein_coding_gene FALSE TRUE AT3G26030.1 ATB' DELTA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta); protein phosphatase type 2A regulator protein phosphatase 2A regulatory subunit isoform B' delta Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform (PP2A, B' subunit, delta isoform) (AtB' delta) (B'DELTA) [Arabidopsis Thaliana] (GB:Q9ZQY6); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to Os03g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051871.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.0931594760620178 -0.720166275837586 0.486604935859515 1 -0.353990088267768 17.8120096017181 -0.0931594760620178 0.166308109858776
AT1G08560_at 2.59843237206604 2.66486223554520 2.21538547955231 2.68340684372788 2.04121099705381 2.05437258519788 2.48234338059142 2.80119398176501 2.45732524933353 3.01891252951256 2.45326196958003 3.969273681704 3.27855338073695 3.52780032903522 4.35717350054293 2.68388947620943 2.86797669806665 3.40220202202173 2.87674954966125 0.197358163378349 0.197390496672236 0.204489441184964 0.196973337529864 0.195774466333265 0.201098741328533 0.194971600305724 0.199371366178262 0.194971600305724 0.194971600305724 0.198671791365638 0.208738419734552 0.196951657020341 0.197510813996995 0.222713458800176 0.194971600305724 0.202823101876111 0.209790009471622 0.199693880603694 1 1 - 2709808 2710333 2710114 2709635 2710915 - gene protein_coding_gene FALSE TRUE AT1G08560.1 SYP111 (syntaxin 111); t-SNARE member of SYP11 Gene Family Identical to Syntaxin-related protein KNOLLE (Syntaxin-111) (AtSYP111) (KN) [Arabidopsis Thaliana] (GB:Q42374;GB:Q8VXY8;GB:Q9FRS8); similar to SYP124 (syntaxin 124), t-SNARE [Arabidopsis thaliana] (TAIR:AT1G61290.1); similar to Knolle [Capsicum annuum] (GB:CAB56195.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.0725366283128625 0.720081656348476 0.486654977262517 1 -0.35404879540908 5.49357373030723 0.0725366283128625 0.0987012321512006
AT4G15320_at 1.23213227326101 0.946489324795672 1.58122020976437 1.51576735021403 0.911856677935824 1.43313832922507 1.05728333265166 1.19522303758775 1.60707640972578 1.13861468707351 1.389195786285 1.12840161658423 1.82939844208241 1.21176697192414 1.17939680319065 0.828359322800762 1.03553329389328 1.51447620293827 1.35927955545579 0.240228793636248 0.240228793636248 0.242564710587494 0.240228793636248 0.240228793636248 0.240228793636248 0.243910250267705 0.240228793636248 0.243770799189548 0.249126350620919 0.245045944036249 0.241662051164076 0.241367068792778 0.244850516458272 0.240228793636248 0.246585420032902 0.26038189931445 0.245158975097611 0.243743715247566 4 4|0 -|/ 8742736 8745021 8744495.143 8742639 8747981 - gene protein_coding_gene FALSE TRUE AT4G15320.1 ATCSLB06 (Cellulose synthase-like B6); transferase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLB03 (Cellulose synthase-like B3), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G32530.1); similar to ATCSLB05 (Cellulose synthase-like B5), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15290.1); similar to ATCSLB02 (Cellulose synthase-like B2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G32620.1); similar to Cellulose synthase [Medicago truncatula] (GB:ABD32407.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) 0.0744780769607248 0.719584940154171 0.486948784251906 1 -0.354393280690534 2.55058361978644 0.0744780769607248 0.106205085721319
AT2G33800_at 11.0365593830374 11.1470795525928 10.5959949681619 10.5313008869957 10.9614927392807 10.7771281798857 10.8404281983716 11.0874338345721 11.3059568660588 11.3954849203660 11.5275474653700 11.919331326732 11.2329180324687 11.3918781108040 12.0503584195888 11.5934984061777 11.0707708518828 11.4599203030318 11.3377551723412 0.0834152356571154 0.077353672444923 0.0805040023901289 0.0844815216881593 0.0805721658287448 0.0807291903164304 0.0801311377234025 0.0786731529750492 0.0816192164577492 0.078889010313079 0.0784762280216645 0.0808178960251266 0.0773738727025372 0.0815716938730948 0.0824193935079361 0.0806592006698224 0.087478493199811 0.0789414438514032 0.0775970250587995 2 2 - 14308018 14309092 14308514.091 14307848 14309506 - gene protein_coding_gene FALSE TRUE AT2G33800.1 ribosomal protein S5 family protein Identical to 30S ribosomal protein S5, chloroplast precursor (rps5) [Arabidopsis Thaliana] (GB:P93014); similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT1G64880.1); similar to 30S ribosomal protein S5, chloroplast precursor (GB:Q9ST69); contains InterPro domain Ribosomal protein S5, bacterial and chloroplast; (InterPro:IPR005712); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.0635085851554471 -0.719437497327159 0.487036017567084 1 -0.354495494750303 22.3107656432434 -0.0635085851554471 0.0577603758617398
AT2G42860_at 0.4018746311858 0.838513981952127 0.457720553165464 0.81023851133399 0.339418605504603 0.959577584163783 0.944648436814635 0.851014438019653 0.65611846105074 0.73744448894356 0.65707853771966 0.950343356642699 0.799177463755749 0.611996162905293 0.384318933595841 0.909310715793204 0.734541034168229 0.752592612041648 0.946571144835522 0.206552059499923 0.206552059499923 0.209531521528988 0.207762068040532 0.212066580464787 0.215045280554657 0.208750226748140 0.212076775639566 0.221586284383711 0.212014197097651 0.208535647342066 0.222992538070881 0.210067947471877 0.213098795372513 0.22151072700113 0.214950184667648 0.224300770921097 0.211741751264846 0.219667206562977 2 2|0 +|/ 17841071 17841636 17841314.4 17840842 17842190 + gene protein_coding_gene FALSE TRUE AT2G42860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1) -0.0861994523249556 -0.71923544694502 0.487155574650848 1 -0.354635534549582 1.45285811794471 -0.0861994523249556 0.145642471744498
AT1G01225_at 1.26378640674104 1.31358319494096 1.02211141072122 0.901862110605938 1.17641208367304 1.08147359868373 1.60550786572391 1.25533494732388 1.15852387698309 0.97369376185845 1.89564242734253 2.14472264386001 1.63918558574390 1.62611597195759 2.23733652531678 1.28480535702654 0.961533274223704 1.45788287170337 1.50246977663499 0.218843731827072 0.212596804952077 0.221295797809616 0.218260529321613 0.212519095283456 0.212930798083368 0.212429898558085 0.214453385721138 0.221383089148418 0.220004294056117 0.217474187295344 0.213915358828621 0.212429898558085 0.226672653507828 0.221208015733682 0.217005755913207 0.216120061779375 0.231638928683841 0.217532938736955 1 1 + 96654 97148 96854.727 95987 97407 + gene protein_coding_gene FALSE TRUE AT1G01225.1 NC domain-containing protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00905.1); similar to Os09g0526800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063728.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09241.1); similar to Os08g0546900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062424.1); contains InterPro domain NC; (InterPro:IPR007053) 0.0651261537799122 0.719120687241274 0.487223488231996 1 -0.354715057944869 2.63624172928787 0.0651261537799122 0.0667044365905296
AT1G70560_at 2.6471039754235 2.89188999898116 1.05245712308172 1.20592146426648 1.91767436321987 2.0103991777766 2.22894980932011 2.14491932214667 1.80724263996517 1.97508473979947 2.08719748752192 4.00629552271401 3.03505910631775 2.9640487289541 2.87458640542652 3.65926632955721 2.65456564435790 3.30264390398953 2.26419071125283 0.243976163503270 0.246076217390086 0.266351180039993 0.252576338297529 0.250264633668672 0.240249041971548 0.244522300287973 0.244788605794176 0.24878068635411 0.248875001445805 0.240421291720881 0.264522685656437 0.264131515815571 0.24059004181359 0.249377224693831 0.25534215036226 0.24865233793047 0.245288233699910 0.240249041971548 1 1|0 +|/ 26610224 26610940 26610616.25 26608518 26611166 + gene protein_coding_gene FALSE TRUE AT1G70560.1 alliinase C-terminal domain-containing protein similar to alliinase family protein [Arabidopsis thaliana] (TAIR:AT1G23320.1); similar to Alliinase EGF-like; Allinase, C-terminal [Medicago truncatula] (GB:ABE79686.1); contains InterPro domain Allinase, C-terminal; (InterPro:IPR006948) 0.0629245581920084 0.719082158247442 0.487246290593817 1 -0.354741754264612 4.55664636499903 0.0629245581920084 0.0544862589368574
AT2G10450_at 1.8432899445045 1.9988958622578 2.20852553989843 2.16909751162256 1.52614519807771 1.88771084898155 1.63220104484631 2.13415344071012 2.27521143204361 2.57848835925146 2.04940272756460 1.92590719723837 1.94513664012656 2.57837570976399 1.99261042232701 2.04834069706446 2.26669595215886 2.28712448828795 2.14736518389341 0.210471914353139 0.209453400757884 0.208964644118889 0.214467186103576 0.211626976284164 0.206037123662455 0.210516437680729 0.214299017279976 0.206037123662455 0.206993592377625 0.212329517162296 0.206037123662455 0.206907716127636 0.210458483251487 0.207101133746820 0.207496197235197 0.213622903535448 0.213880809082102 0.218957853947282 2 2|0 +|/ 4027392 4027811 4027631 4027388 4027856 + gene protein_coding_gene FALSE TRUE AT2G10450.1 14-3-3 protein, putative / grf15, putative similar to GRF3 (GENERAL REGULATORY FACTOR 3), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT5G38480.1); similar to 14-3-3 protein [Manihot esculenta] (GB:AAY67798.1); similar to 14-3-3 family protein [Malus x domestica] (GB:AAV50005.1); similar to 14-3-3 protein [Populus x canescens] (GB:AAF76226.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.0756271970904856 -0.71902706480733 0.487278897327338 1 -0.354779925666094 4.16019620105202 -0.0756271970904856 0.110599897514762
AT3G49590_at 7.40417899020864 7.55935039975986 7.62561265504063 7.56561152031057 8.02520940711196 7.67890972417166 7.05635600555203 6.9368047452156 7.60839084033956 7.46276110196288 6.94518874316772 7.02972373692371 7.36588479973722 7.30661109889195 7.05023626342574 7.19575802406463 7.0827386852953 6.92109442350953 7.3251486925761 0.181808250138632 0.169024500291644 0.176838221116197 0.165736224545708 0.174462387832488 0.19142716984202 0.174324180052963 0.172114355977175 0.178184486517716 0.171127975499004 0.174238839828360 0.178051981491223 0.179524777545051 0.169162927444441 0.174349391321554 0.165461819852411 0.190815222826315 0.175166324661261 0.175186121075596 3 3 + 18390092 18390915 18390568.909 18388545 18391269 + gene protein_coding_gene FALSE TRUE AT3G49590.1|AT3G49590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18770.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE83766.1) 0.0656921091960676 0.718970955045027 0.487312106949185 1 -0.354818798511995 14.7702981893396 0.0656921091960676 0.0696304266059474
AT1G74180_at 1.98494640431555 1.48217012479306 2.47690285047829 1.76344952928653 2.43505119844185 1.72503631229746 1.54983231200692 1.73053065740056 1.95961238347039 2.07702015017562 1.85748588165648 1.93588754968062 1.62653731229744 1.89655050981841 2.06689353468730 2.73491581435492 1.93691366207857 2.18248433082195 2.66922768701238 0.228686544713181 0.223205503778171 0.218380356966014 0.235743756599215 0.222421934038336 0.233287466770469 0.223163509345003 0.225656397014293 0.244139576442602 0.228770375931212 0.220875558312194 0.225679739604131 0.218380356966014 0.224366737901670 0.229644694058749 0.218380356966014 0.220664871433693 0.224126462059414 0.220617655968991 1 1 - 27900882 27901352 27901131.364 27900858 27904569 - gene protein_coding_gene FALSE TRUE AT1G74180.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G25470.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74190.1); similar to H0821G03.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86057.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.103830966101003 0.718863469227918 0.487375728358728 1 -0.354893257045719 4.02598758094949 0.103830966101003 0.197204324972009
AT3G15510_at 7.17810788547629 8.0478007491634 6.09358361269611 6.41515081026494 8.87737402311609 8.60692420036413 6.19537476481839 6.43987670449584 3.27321195245501 4.81414077756936 3.20790723308027 3.33825902516384 4.6530679540622 4.08040850765785 2.63322041630774 4.12365641125924 4.53386036145567 3.93073145908234 4.37900209860129 0.305461052113779 0.299464001008169 0.311983319774317 0.296940152558638 0.296940152558638 0.301113182608893 0.316536465528594 0.297752840517521 0.310209122931058 0.296940152558638 0.301533370194652 0.297016340674253 0.301964401530614 0.296940152558638 0.297584637033199 0.296940152558638 0.298985476184099 0.297171122924639 0.296940152558638 3 3 + 5244551 5244943 5244746.909 5243517 5245389 + gene protein_coding_gene FALSE TRUE AT3G15510.1 ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2); transcription factor Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAM-like protein [Prunus persica] (GB:CAG28971.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0950777235442971 0.718826812428951 0.487397426878955 1 -0.354918647973012 11.2158193590747 0.0950777235442971 0.172421461707186
AT1G72660_at 1.58358166830408 1.37102009804324 1.98624287164073 1.56286242520177 0.83066366983153 1.93172521278590 1.12863512187942 1.57102084181948 1.56689865767317 1.58952986743668 1.32850974760125 1.67513154081227 1.38171024103416 1.39281992624887 1.56951525836286 1.41779279539123 1.84957052505884 1.20815540890932 1.09463925880115 0.205300606096641 0.207901065119828 0.203019869231577 0.20456954981219 0.205099021829658 0.202170434547596 0.206809493988953 0.205834719986318 0.207252664490644 0.205204048453116 0.204645886430496 0.203750254146996 0.206066105575836 0.213998570786960 0.213979040715926 0.202170434547596 0.207489495217235 0.211963278416756 0.202170434547596 1 1|0 +|/ 27359296 27360145 27359734.6 27357542 27360332 + gene protein_coding_gene FALSE TRUE AT1G72660.1|AT1G72660.2|AT1G72660.3 developmentally regulated GTP-binding protein, putative|GTP binding similar to ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G17470.2); similar to developmentally regulated GTP binding protein [Pisum sativum] (GB:AAB67829.1); similar to Os05g0357600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055297.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain GTP1/OBG domain; (InterPro:IPR006074) 0.112593599071886 0.718773783338445 0.487428817821128 1 -0.354955377366083 2.94318062622044 0.112593599071886 0.221109084755734
AT1G08320_at 2.18081357737937 2.04720335711161 1.95149058463230 2.13629533885124 1.92680225114489 2.19113778580751 1.60546999760561 1.69234028380217 1.85376752850521 2.14163393675654 2.07950192126120 1.78782237203702 1.93563996234896 2.06239337802514 1.94561308406635 1.66599450833915 2.00686660237414 1.52381521629617 1.75712201462324 0.251321503144114 0.252874364498843 0.255931562777975 0.256532911532929 0.251693648400615 0.26250239381298 0.254188102296240 0.244313835911625 0.247436764909691 0.244313835911625 0.250177110035421 0.244313835911625 0.258627719518919 0.254621090780378 0.250273287493483 0.248579152447202 0.250379677071694 0.246319695303497 0.249624771147126 1 1|0 -|/ 2622312 2623743 2623100.6 2621901 2627845 - gene protein_coding_gene FALSE TRUE AT1G08320.1|AT1G08320.2|AT1G08320.3 bZIP family transcription factor|DNA binding similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT5G06839.1); similar to basic leucine zipper protein [Zea mays] (GB:AAC39351.1); similar to Os01g0859500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044868.1); similar to Os11g0152700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065772.1); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT5G06839.1); similar to Os01g0859500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044868.1); similar to TGACG-sequence-specific DNA-binding protein TGA-2.1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95838.1); similar to Os12g0152900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066179.1); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.064211370049743 0.718311707422963 0.48770239968218 1 -0.355275320236450 3.86317600065276 0.064211370049743 0.0622574127737595
AT1G44990_at 3.84191759784745 3.80090220364667 4.22395860021154 3.96004791587458 3.67681663132853 3.93377430532628 3.96837775490877 3.93782162162777 4.76149530712580 4.58445816367676 4.26158816406844 4.26775235517429 4.34542793021691 4.24106878304021 4.29896298961657 4.16800058105901 4.28998446648693 4.54221618249954 4.13126657117342 0.176455980061020 0.168023576680710 0.171571537506136 0.173724429173510 0.169284918859667 0.175473050443924 0.168902432667919 0.166318553490012 0.166934339209612 0.170994900884089 0.166318553490012 0.170600212361269 0.167844654816638 0.166517227973435 0.169307135755257 0.166318553490012 0.172924424947040 0.167716174226778 0.168307413986973 1 1|0 -|/ 17010009 17010216 17010092.4 17009982 17010248 - gene protein_coding_gene FALSE TRUE AT1G44990.1 unknown protein -0.064568465230426 -0.717934154048418 0.487926008463274 1 -0.355536601559889 8.3150930099359 -0.064568465230426 0.0643549403783916
AT4G19150_at 6.26406977732808 6.27295670608298 5.94307807976706 6.09610421771113 6.51555254054014 6.25917706381657 5.54169434956844 6.49648570819308 6.02558053923389 6.16051487708068 6.12255866211328 6.3848649451293 6.09923393730405 5.78777206290075 6.2328638427235 5.73771112053282 5.18263768301491 5.59777935538557 6.24355981484555 0.213652439239573 0.221054563284004 0.208872895504566 0.206504201271681 0.218179524119690 0.212751389406499 0.213013905612762 0.203483839009336 0.213484123162502 0.205881014528348 0.209744137067834 0.208522618040468 0.213468130889461 0.217157931923771 0.203483839009336 0.203483839009336 0.22799093446865 0.209178492575157 0.203483839009336 4 4 - 10471616 10472130 10471917.909 10471342 10472753 - gene protein_coding_gene FALSE TRUE AT4G19150.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G03430.1); similar to PREDICTED: similar to ankyrin 2,3/unc44, partial [Strongylocentrotus purpuratus] (GB:XP_001199844.1); similar to Os10g0580700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065515.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0951821845415515 -0.717777099361139 0.48801904387736 1 -0.355645252868572 12.1918378611383 -0.0951821845415515 0.173128274259143
AT2G33560_at 1.01875360040706 1.44349707352563 1.45765011838467 1.36117758574288 0.868510972085473 1.56160519178543 1.52792623018894 1.40255062164701 1.60954570908284 1.20814489653567 1.77278458326036 1.62833923356709 1.66363876532797 1.46740465774750 1.75816490718451 1.48355793927023 1.43702650036614 1.95200969627609 1.49927720700046 0.194160460947051 0.195084865750571 0.190297651821284 0.196812428937722 0.188194721029575 0.207376619278302 0.192236416893968 0.191189641922146 0.194967451722097 0.193970739434693 0.193673999435746 0.189158063282383 0.199573767363108 0.192418771516423 0.202454721974357 0.188194721029575 0.196583920489042 0.199251290746413 0.19328916877473 2 2|0 -|/ 14220919 14221974 14221441.7 14220677 14223075 - gene protein_coding_gene FALSE TRUE AT2G33560.1 spindle checkpoint protein-related similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G05510.1); similar to Cellular retinaldehyde-binding/triple function, C-terminal [Medicago truncatula] (GB:ABE79666.1); contains InterPro domain Chondroitin AC/alginate lyase; (InterPro:IPR008929); contains InterPro domain Mad3/BUB1 homology region 1; (InterPro:IPR013212) 0.0852153000297233 0.717228082421488 0.488344354206557 1 -0.356024897215053 2.87238645234487 0.0852153000297233 0.143313149559364
AT1G66400_at 2.27140228496680 3.01072080338329 2.32563817504304 2.50697724850896 2.52639317258875 2.64476061958119 2.39359551563992 2.82000709324403 2.75515786973 2.71530330016626 3.01595472146541 2.64269979854964 2.59410426133261 3.08793591414571 2.64455769672548 2.34461722194970 1.87407663265339 2.68375601241685 2.52221248167245 0.174117738070971 0.183103554950482 0.184741641407849 0.176099734534285 0.174117738070971 0.178153933194570 0.176302810032558 0.186962928906679 0.183317760514374 0.175476262375043 0.175030872911931 0.174543278473972 0.184644638111685 0.176757514561838 0.187081341526107 0.176522233941862 0.178781849754306 0.179079690476116 0.178956042813182 1 1 - 24774609 24774956 24774790.091 24774238 24775034 - gene protein_coding_gene FALSE TRUE AT1G66400.1 calmodulin-related protein, putative similar to TCH2 (TOUCH 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G37770.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); similar to calcium binding protein [Sesbania rostrata] (GB:CAC43238.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) -0.0881254442480395 -0.717116327513112 0.488410588975985 1 -0.356102143429882 5.20003053058338 -0.0881254442480395 0.152377890819804
AT1G61940_at 0.87231617078532 0.694839647405788 0.679192717721417 0.413192382346862 0.50410301639511 0.755313519528757 0.553939432382547 0.473813850039398 0.504203127733179 0.506098340651359 0.759031033627106 0.110026525659907 0.585161316786538 0.352960544103115 0.697760398271073 0.468754125073322 0.368643548244943 0.281547976552408 0.56193732147032 0.180211385045227 0.182237093015700 0.181520671886647 0.176898594576305 0.179759581392127 0.181344900257964 0.180205932511201 0.176898594576305 0.190577779686631 0.176971378967641 0.183655093755794 0.178714747510973 0.183754953837769 0.179665649090093 0.186945877641279 0.182784007806109 0.186108242937584 0.182307031012825 0.187837171651233 1 1|0 -|/ 22901096 22901898 22901525.333 22901064 22902240 - gene protein_coding_gene FALSE TRUE AT1G61940.1 AtTLP4 (TUBBY LIKE PROTEIN 4); transcription factor Member of TLP family similar to AtTLP3 (TUBBY LIKE PROTEIN 3), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G47900.2); similar to Tubby protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95936.1); contains InterPro domain Tubby; (InterPro:IPR000007) -0.0659353896168556 -0.716974868185584 0.488494436862855 1 -0.356199906078203 1.10687148215469 -0.0659353896168556 0.0717250353438362
AT1G01630_at 8.65167724505396 8.71550626493694 9.12546395765071 8.96808767829058 9.05722383784451 8.94100598230507 9.24935094553542 9.14411185118895 9.53912141528116 9.23281746527315 9.64778403352108 9.69239130246998 9.38963467298078 9.21345095559594 9.44264475026283 8.94167494004754 8.78970479734636 9.204893128129 8.98336990321829 0.123403770158954 0.118690566082739 0.127795032091596 0.132807094849341 0.119492102320598 0.128018146164822 0.131161774982053 0.126914169055988 0.128154824797929 0.123586583166524 0.121435333416800 0.122815675127100 0.122659544895570 0.134719446295590 0.124400548828510 0.123761541482201 0.138005330645155 0.124886318537818 0.123214848363731 1 1|0 +|/ 229460 230638 230078.8 229013 230917 + gene protein_coding_gene FALSE TRUE AT1G01630.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G14820.3); similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE80207.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.0606432576486151 0.716969714390668 0.488497491864625 1 -0.356203467540974 18.2525744289183 0.0606432576486151 0.0399989544495303
AT3G27410_at 0.728689696772657 0.625294363653041 0.488232728135678 0.735463128525963 0.534437078659291 0.638896662000753 0.318034009510511 1.05783616718607 0.936868194234137 0.745995830654088 0.765226358155975 0.643138696006393 0.445808884246758 0.364892006153249 1.0846813667158 0.611606681160814 0.608494401369051 1.16829939448624 0.701824826568966 0.190164844742157 0.186223184757071 0.191605339760510 0.188783590842633 0.192821594132775 0.194224427300211 0.193523748807983 0.199606780521345 0.193522599618177 0.201406871172821 0.191685807185469 0.186223184757071 0.193877767023692 0.192416632697678 0.190670404803932 0.189251453268811 0.194931317793796 0.196893276638609 0.193664977656088 3 3 - 10146482 10146842 10146660.818 10146481 10146879 - gene protein_coding_gene FALSE TRUE AT3G27410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40620.1); contains domain E set domains (SSF81296) -0.0832919851162143 -0.716804856289539 0.48859522058734 1 -0.356317378385464 1.39406785798342 -0.0832919851162143 0.137361424324241
AT3G07410_at 2.19192234882984 2.38209271222195 2.52591783710588 1.80716964571693 2.69455603902171 2.6177463025518 2.62906068488747 2.34262578620188 1.62057156064706 2.19715099509481 1.98334677540915 2.47939994035793 2.30518412088828 2.40577299616258 2.20974493310586 2.15501397919671 2.51324374009994 2.3636199350982 2.66110362484568 0.217375242547158 0.210943992015906 0.207783836906988 0.212636160618432 0.205912528942458 0.210455269199284 0.207470888385090 0.20998009456966 0.218760202075593 0.221554973966993 0.221734683183389 0.213289136586478 0.218644404938685 0.21580094351038 0.206562386874288 0.208792430660197 0.20861850648401 0.211643621507617 0.21894949426823 3 3|0 -|/ 2372498 2373382 2372830.4 2372323 2373562 - gene protein_coding_gene FALSE TRUE AT3G07410.1 AtRABA5b (Arabidopsis Rab GTPase homolog A5b); GTP binding similar to ARA4 (Arabidopsis Rab GTPase homolog A5c), GTP binding [Arabidopsis thaliana] (TAIR:AT2G43130.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02108.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.083614574370554 0.716469471180964 0.488794075757183 1 -0.356549044065488 4.62964868426836 0.083614574370554 0.13852033159846
AT4G18020_at 5.16411925113741 4.47797372956728 4.47953384254668 3.76275964894359 4.98540346797836 4.56301841695684 4.70960421240673 4.8216790098766 4.59849614117392 4.74619235254998 4.73319044521401 5.63363001188547 5.44182240523045 5.48965791833714 4.65895692678831 5.24466014512081 5.26707272525844 4.94712682407385 4.54896007662184 0.210245931668643 0.209812666193505 0.204067507884603 0.204588614770288 0.210295802838067 0.215756427533101 0.211130336420121 0.204067507884603 0.215438251750071 0.207192318092791 0.213004387231443 0.204067507884603 0.208230818732117 0.205262211779346 0.211029618978158 0.206842676481643 0.215904016727838 0.213735574747085 0.210459789010456 4 0|4 /|- 10003758 10004601 10004180.667 10003303 10007503 - gene protein_coding_gene FALSE TRUE AT4G18020.1|AT4G18020.2|AT4G18020.3|AT4G18020.4 APRR2 (PSEUDO-RESPONSE REGULATOR 2); transcription factor|APRR2 (PSEUDO-RESPONSE REGULATOR 2) Encodes pseudo-response regulator 2 (APRR2). Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O49701;GB:Q94F45); similar to GPRI1 (GOLDEN2-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G20570.1); similar to Response regulator, RegA/PrrA/ActR type [Medicago truncatula] (GB:ABE93062.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789)|Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O49701;GB:Q94F45); similar to GPRI1 (GOLDEN2-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G20570.1); similar to Response regulator, RegA/PrrA/ActR type [Medicago truncatula] (GB:ABE93062.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.100066639241340 0.716451413770984 0.48880478369678 1 -0.356561514358476 9.5246268801036 0.100066639241340 0.187629152385869
AT4G34150_at 8.57530369857298 8.51428073923696 8.81455897564992 9.0944585360322 8.2896436235021 8.3882313710852 8.66400069285234 8.65338459616332 8.47582391896097 8.13571726988528 7.8321687125823 7.53001614607056 8.18708893987736 8.15395475439346 7.63175494715095 8.41220668630358 8.71610881370314 7.67685720589387 7.95013212922629 0.159016976398153 0.164055992547658 0.167367286781006 0.162497063045888 0.159649158622571 0.162212473715984 0.164185205563045 0.157932387480723 0.172597333721024 0.156898041508795 0.163544166799455 0.166363079950491 0.164087361892963 0.172380030351136 0.166405017035114 0.156898041508795 0.167137377490776 0.162177591389615 0.164366495934973 4 4 + 16355482 16356923 16356341.818 16354950 16357297 + gene protein_coding_gene FALSE TRUE AT4G34150.1 C2 domain-containing protein similar to (AT)SRC2/SRC2 (SOYBEAN GENE REGULATED BY COLD-2), protein binding [Arabidopsis thaliana] (TAIR:AT1G09070.1); similar to C2 domain-containing protein / protein kinase-related [Musa acuminata] (GB:ABF71994.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain XYPPX repeat; (InterPro:IPR006031); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.062362109374829 -0.716388042808895 0.488842363453471 1 -0.356605275557283 16.7266047616891 -0.062362109374829 0.0524614894950106
AT2G35380_at 1.49828503181652 1.18448778514469 1.28790266234095 1.64835751211051 0.956557510663516 1.28641815677639 1.45321898235666 1.53221418256431 1.71052320148159 1.68606904293660 1.48097138262505 1.55732576645033 1.82715774838232 1.24232277048803 1.53944616059055 1.63952177667064 1.57801415868719 1.48418293968008 1.30475442607853 0.210002962874464 0.210197954442627 0.211604822854861 0.219840189120632 0.206202312759025 0.212399367778298 0.207575643730464 0.207991910312522 0.222678051813171 0.206202312759025 0.209459755680235 0.207237599098111 0.206202312759025 0.208692412218384 0.210466676281078 0.216232265931062 0.209494398005895 0.224507579558329 0.207492157632585 2 0|2 /|+ 14900495 14900789 14900639.8 14899680 14901072 + gene protein_coding_gene FALSE TRUE AT2G35380.1|AT2G35380.2 peroxidase 20 (PER20) (P20)|peroxidase Identical to Peroxidase 20 precursor (EC 1.11.1.7) (Atperox P20) (ATP28a) (PER20) [Arabidopsis Thaliana] (GB:Q9SLH7;GB:P93728); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT1G44970.1); similar to Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] (GB:ABE93058.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.0728701269415823 -0.716373948447871 0.48885072182402 1 -0.356615008027794 2.9112969253612 -0.0728701269415823 0.101417223403285
AT1G70510_at 1.5254723327849 1.31891603936738 2.04718148720784 1.77918154295154 1.37686897923146 1.68537030013366 1.87392337600388 1.66533503840750 2.03468778426602 2.37059521512533 2.05913687806603 1.84163131065441 2.09226668582771 2.33627490765765 1.96576844888956 1.95951808676769 2.22471128010857 2.19951243903155 1.81232829622522 0.19095111203308 0.190246960240041 0.186104942382062 0.187018464568541 0.187702351799068 0.183926525002324 0.190496588787964 0.182900620616127 0.184691397842329 0.188643227577297 0.182900620616127 0.193854497931231 0.185463230352902 0.184585929035521 0.18619752212572 0.190655819397560 0.1870629763452 0.204756966035446 0.194659304393130 1 1 + 26580881 26585730 26583708.9 26580149 26586094 + gene protein_coding_gene FALSE TRUE AT1G70510.1 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor A member of class I knotted1-like homeobox gene family (together with KNAT1). Similar to the knotted1 (kn1) homeobox gene of maize. KNAT2 acts synergistically with cytokinins and antagonistically with ethylene based on ectopic expression studies in different mutant backgrounds and hormone treatments. In addition, KNAT2 is negatively regulated by AS and YABBY genes. KNAT2 is strongly expressed in the shoot apex of seedlings, while in mature plants the gene is primarily expressed in flowers and inflorescence stems. Identical to Homeobox protein knotted-1-like 2 (KNAT2) (ATK1) (KNAT2) [Arabidopsis Thaliana] (GB:P46640;GB:Q42414;GB:Q9CAL4); similar to KNAT6 (Knotted-like Arabidopsis thaliana 6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G23380.1); similar to homeobox knotted-1-like protein KNOX3 [Lotus corniculatus var. japonicus] (GB:AAX21347.1); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain KNOX1; (InterPro:IPR005540) 0.0692771434133744 0.716321043251322 0.488882096946419 1 -0.356651538702666 3.73772593859315 0.0692771434133744 0.0870744677792458
AT4G27270_at 4.09446708761248 3.91633232357176 3.62554234600602 3.62038950769786 3.12721227695422 3.38239078227424 3.31831589618856 3.68773512750654 4.36134771776973 4.34725939036178 4.87938209183809 5.18380773922091 4.64590964098396 4.89711827730426 5.10635971120615 4.64231613249704 4.61109383621903 4.68046649689715 4.42705279652775 0.183515960192318 0.183985443914744 0.192177890005553 0.185738784197098 0.192587045773509 0.183515960192318 0.186966464713034 0.188308483963655 0.198465525299365 0.189731191518791 0.186613583390370 0.187975586996504 0.184069649098778 0.189440863727093 0.185536500249183 0.187348780388576 0.198170441880388 0.189627482824648 0.193010635500647 4 0|4 /|- 13661469 13661960 13661735.556 13661337 13663300 - gene protein_coding_gene FALSE TRUE AT4G27270.1 quinone reductase family protein similar to FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT5G54500.1); similar to putative quinone oxidoreductase [Cicer arietinum] (GB:CAD31838.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254) 0.0684622793654958 0.716302690485414 0.488892981238295 1 -0.356664210592251 8.20122818963842 0.0684622793654958 0.0835954671224746
AT3G25280_at 1.58249620261009 1.59052191260607 1.45234220400138 1.63069617377049 1.25981196713708 1.41594670358186 1.52188079978360 1.74589626770548 1.02925463202808 1.33053973528253 1.17264052418018 1.28407284728588 1.22765197488427 0.945418581998375 1.22456284606374 1.18007706992224 1.56120709817517 1.57495273197197 1.32069855116931 0.189083510893662 0.189211092105612 0.193049122647395 0.192482398337692 0.188389308612001 0.188794658921412 0.194407776827977 0.189124195937797 0.208589965613266 0.187702633284509 0.191173352187076 0.189532812020413 0.190719991160758 0.188172756235131 0.198528109166155 0.185822837526044 0.200190176035505 0.188263280795395 0.193623959718698 3 3 + 9208696 9209208 9208969.182 9207420 9209273 + gene protein_coding_gene FALSE TRUE AT3G25280.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G25260.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE79322.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.0630037735350095 -0.71623611102845 0.488932468105377 1 -0.356710178723634 2.77402599496794 -0.0630037735350095 0.056458148861527
AT3G01370_at 8.62777922628773 8.3198524360823 8.3968692320391 8.05514713915619 8.59015712199254 8.4384257874308 8.59471053218257 8.0284789859388 8.58007921700417 9.00307284940876 8.55325305061565 8.9139004792592 8.34127165789003 8.5663296054061 8.97892775377355 8.88083516233626 8.29732266974619 8.60411547508169 8.75900137061214 0.112007321210013 0.108046783753848 0.111257305636008 0.118187454593875 0.107192505485891 0.109308210435920 0.108885235892671 0.113895047471038 0.127980806470988 0.105248902222117 0.107304690991478 0.107570475444046 0.113162722961665 0.107869908791839 0.110083017136407 0.105248902222117 0.111675970534951 0.111201973584035 0.111833476080905 3 3|0 +|/ 142508 143441 143062.4 139018 143713 + gene protein_coding_gene FALSE TRUE AT3G01370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to OSIGBa0130P02.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67138.1); similar to Os04g0464800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053020.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.0806394027731483 -0.716158996809345 0.488978205371096 1 -0.356763415496425 17.0927837046914 -0.0806394027731483 0.128949933512547
AT2G35490_at 10.2254905016735 10.3640589980252 10.3654626596069 10.4181710578510 10.4439925393362 10.1125315667051 10.6524057837275 10.7337227180637 10.6160188612871 10.6210318481394 10.6367892373690 10.5174648680577 10.5155688630409 10.5668199648878 10.6006476516664 10.7618690198316 10.4465633411778 10.6339845825207 10.4276234184651 0.0729051573961449 0.0718137869518344 0.0771651446995492 0.0756653745850711 0.0714726613801344 0.0816025534744026 0.0817653338033667 0.0719787422618861 0.077466105115488 0.0728028664950317 0.0718206181299391 0.0714726613801344 0.0729569410740008 0.0770799787176486 0.0738424041015733 0.0714726613801344 0.0798878784175821 0.0726071843800395 0.0734236509209022 2 2|0 -|/ 14919412 14920301 14919838.5 14919223 14920956 - gene protein_coding_gene FALSE TRUE AT2G35490.1 plastid-lipid associated protein PAP, putative Identical to Probable plastid-lipid-associated protein 3, chloroplast precursor (AtPap3) (Fibrillin-3) (PAP3) [Arabidopsis Thaliana] (GB:O82291;GB:Q94B19); similar to FIB (FIBRILLIN), structural molecule [Arabidopsis thaliana] (TAIR:AT4G04020.1); similar to plastid-lipid associated protein PAP3 [Brassica rapa] (GB:AAK57563.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.0644039896962763 -0.716024381561804 0.489058053422174 1 -0.356856336421772 20.9844068866401 -0.0644039896962763 0.0643935970621882
AT4G16270_at 1.55114665618305 1.86353940724594 2.06806029315171 1.80836484429919 1.38344353974170 1.88452085582325 1.36017243946106 1.17509166966817 2.20222500655049 2.14629925614799 1.94500943063124 1.83241714799033 1.8854481804818 1.95797658368913 2.52954637558108 1.73136432400764 2.37907837677562 2.17991458914384 2.25152220048289 0.24565153813895 0.241361927406037 0.253883763108697 0.240549138583231 0.24274841449715 0.241922239075769 0.248104352884358 0.23605807821301 0.244963394153364 0.240658195612752 0.236792254836136 0.24452359175021 0.238291614980966 0.242736766756359 0.24309563975906 0.242072116615674 0.242762283539104 0.248523272018849 0.239096115060804 4 4|0 +|/ 9205710 9206311 9206053.3 9205032 9206568 + gene protein_coding_gene FALSE TRUE AT4G16270.1 peroxidase 40 (PER40) (P40) Identical to Peroxidase 40 precursor (EC 1.11.1.7) (Atperox P40) (PER40) [Arabidopsis Thaliana] (GB:O23474;GB:Q53XE3;GB:Q67ZY5); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT1G44970.1); similar to Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] (GB:ABE82792.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.076844364212436 0.715824264581964 0.489176769154494 1 -0.356994442095771 3.76434739507911 0.076844364212436 0.116135581447001
AT1G69560_at 0.832808531097437 1.00680492348689 1.35424694779776 0.914750688352324 0.765137871883764 0.704743446089139 0.845277269544615 0.82922638609196 1.04544723306325 1.04963114847388 0.770283822003684 0.85519594562115 1.15392320799277 0.897043229970236 1.01611111897150 0.774466480598189 0.467228461522101 1.13243168953319 1.13242730574118 0.212950310331214 0.215019568905250 0.218128940318743 0.216568973322725 0.212454063672155 0.211225509829321 0.217046193606226 0.213050396587342 0.215954278351884 0.217439740875862 0.217192426836901 0.213738405412051 0.220562173893237 0.218899238853843 0.221807217986836 0.218697124536049 0.217497678038756 0.217497377703161 0.220186157689682 1 1|0 +|/ 26161924 26162456 26162197.7 26161418 26162757 + gene protein_coding_gene FALSE TRUE AT1G69560.1 MYB105 (myb domain protein 105); DNA binding / transcription factor Encodes a putative transcription factor (MYB105). similar to MYB117 (myb domain protein 117), transcription factor [Arabidopsis thaliana] (TAIR:AT1G26780.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE80439.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0681546367953221 -0.715679737270013 0.489262518364242 1 -0.357094162280731 1.88620986985267 -0.0681546367953221 0.082512206764459
AT1G44750_at 7.4614259139597 7.60334389867002 7.89381928951514 7.78367942344435 8.55587728386482 7.80835808785537 8.02205263544032 7.95460588205959 6.82845407790624 6.96854058177293 6.64860563903527 6.9466497865934 7.06527346887237 7.07609501497206 6.20508623964616 6.74307138160278 7.1143515228551 6.8547535782861 6.95696295061772 0.218777780369159 0.223851541587265 0.224447315162475 0.217457068544657 0.215548365629975 0.221967506183512 0.214573191494713 0.222398963101509 0.220539252799179 0.213848268443158 0.221096508112336 0.221824310285499 0.214933941438266 0.221157848169159 0.21506905522456 0.211590249468739 0.227389465637911 0.217837795607332 0.219404689737018 1 1 + 16897032 16897564 16897337.636 16895079 16897905 + gene protein_coding_gene FALSE TRUE AT1G44750.1|AT1G44750.2|AT1G44750.3 ATPUP11 (Arabidopsis thaliana purine permease 11); purine transporter|ATPUP11 (Arabidopsis thaliana purine permease 11) Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP13 (Arabidopsis thaliana purine permease 13), purine transporter [Arabidopsis thaliana] (TAIR:AT4G08700.1); similar to Os02g0689200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047783.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD07671.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0819131987607296 0.715046338040955 0.489638428279546 1 -0.357530977162024 14.7602561513921 0.0819131987607296 0.133555772627383
AT4G39190_at 2.21315858895646 2.39672113005588 2.21252738209229 2.55875819714126 2.28493677894123 2.21930258523763 2.12138896855954 2.29656286013711 2.33294038487946 2.39714990446559 2.31194414278382 3.32225631203719 2.26310421104220 2.33140541358668 3.03216218775229 2.70688250405957 1.98121016792799 2.59874978959013 2.76225203559316 0.166538875468354 0.168699569875215 0.164059664065047 0.164262044004637 0.163381062249401 0.169786382871271 0.163827291171456 0.159523184394517 0.164314334472541 0.165666246424431 0.159523184394517 0.172105658830929 0.165081486316372 0.159523184394517 0.160581207300986 0.165347049313365 0.166709119060054 0.178895379461438 0.166974587758720 4 4 - 18252076 18252597 18252392.545 18251805 18253067 - gene protein_coding_gene FALSE TRUE AT4G39190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21560.1); similar to hypothetical protein cgd3_630 [Cryptosporidium parvum Iowa II] (GB:XP_626648.1) 0.0664701241886348 0.715020797151964 0.489653590017511 1 -0.357548583748539 4.82087545276195 0.0664701241886348 0.0751473261293478
AT2G41110_at 6.94272446738915 7.36526775969386 6.57454972175536 6.46415264792908 6.24280182382496 6.27197536074809 6.07821071197522 6.48423157428285 7.69170537612248 6.05668419548004 7.93741973345694 7.89911522887662 6.38089705064272 7.36898973542481 7.19039252436013 7.05161707687772 6.0075076812281 6.28368363448428 5.86937360923275 0.213325653571305 0.207398973201342 0.213670177848009 0.207796705626546 0.209380311926763 0.212287965635622 0.213198301119716 0.210718847047077 0.217059419784007 0.209646366713946 0.219499192461568 0.213444817754285 0.212724757213322 0.214090542734060 0.206567764939975 0.206740041524806 0.21198676060864 0.208522501813175 0.218450496333805 2 2 + 17147467 17148240 17147927.273 17147389 17148509 + gene protein_coding_gene FALSE TRUE AT2G41110.1 ATCAL4 (calmodulin-related protein 4); calcium ion binding Encodes a touch-inducible calmodulin-related protein. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0732298498931323 0.714986451283661 0.489673979076136 1 -0.357572259143040 13.3300928718402 0.0732298498931323 0.103317313259621
AT2G27250_at 0.959455489304203 0.793425465938162 0.902548832793431 0.733449949440918 1.06047492125822 0.893200245314567 0.601834389586648 0.709199289297916 0.851656924454048 0.739400228357783 0.753056127006849 0.978794440162769 0.571656043990147 0.407072558269555 0.506466968186979 0.669931697804105 0.577386412287172 0.209905512994231 0.930487118511715 0.207601895727222 0.211603978375772 0.208878988069719 0.212094401612408 0.218173222183444 0.208947543890363 0.210853313567698 0.210158700728455 0.210087416650331 0.209576832441269 0.218334882959355 0.215822745037525 0.208246637260141 0.207601895727222 0.220420496645008 0.207601895727222 0.221614476496328 0.219179500934249 0.216606757674042 2 2|0 -|/ 11672264 11672790 11672507.375 11672064 11672846 - gene protein_coding_gene FALSE TRUE AT2G27250.1|AT2G27250.2 CLV3 (CLAVATA3); kinase activator/ receptor binding One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 functions as a putative ligand for the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function. similar to Protein CLAVATA3 precursor [Contains: MCLV3] (GB:Q9XF04) -0.0623956041750362 -0.714818639510308 0.48977360625501 1 -0.357687920871219 1.54409781146455 -0.0623956041750362 0.0535263530059385
AT1G75830_at 1.61354441577971 1.28388182705254 1.35590979382193 1.25308621804386 1.7439922323051 1.70867665584108 1.38434658820724 1.09318575546178 2.23339793235337 1.88743354877988 1.89033759761762 1.33909827033494 1.76777428844557 1.85713655518125 1.83923021674178 1.86426556465344 1.84980665950726 1.69034292177593 2.08366833819214 0.182649020093924 0.177321839454396 0.177523839304754 0.178113952163828 0.180692100134767 0.179958359809799 0.178942458570443 0.177785939811194 0.176832749456319 0.176832749456319 0.176832749456319 0.178546361600218 0.181575897264143 0.181404158558426 0.178311824129205 0.180489560739317 0.179212953135584 0.18364628861448 0.181339372368654 1 0|1 /|+ 28476302 28476386 28476342.833 28476018 28476552 + gene protein_coding_gene FALSE TRUE AT1G75830.1 LCR67/PDF1.1 (Low-molecular-weight cysteine-rich 67) Identical to Cysteine-rich antifungal protein 1 precursor (AFP1) (Anther-specific protein S18 homolog) (Low-molecular-weight cysteine-rich protein LCR67) (AFP1) [Arabidopsis Thaliana] (GB:P30224;GB:Q42179); similar to PDF1.3 (plant defensin 1.3) [Arabidopsis thaliana] (TAIR:AT2G26010.1); similar to Cysteine-rich antifungal protein 1 precursor (AFP1) (GB:P69241); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Knottin; (InterPro:IPR003614) -0.0671205093909505 -0.71445403227158 0.4899901107296 1 -0.357939136347642 3.34478574367616 -0.0671205093909505 0.0784057821328061
AT1G79540_at 3.33295251173682 3.95577987681522 3.66010596473594 3.98098899550879 3.41346479889465 4.67404611672218 3.32575691541462 3.2990085870643 3.09879542038283 3.56131163842298 3.18707777835328 2.91036019180987 3.59683368623222 2.96791846980424 3.2816743118152 3.22984711194748 3.58247991872191 3.0114688046188 3.62867951827458 0.212542199120932 0.211677946603694 0.218917298379848 0.218033878599627 0.216835639489211 0.233869728835474 0.220055148892030 0.214802209133237 0.226248600297535 0.213167577656792 0.214301284129282 0.210008133169439 0.211151046014341 0.210859753849377 0.210008133169439 0.210008133169439 0.213951627937257 0.214446564998817 0.221503845589166 1 1 - 29925282 29925799 29925536.364 29924976 29927569 - gene protein_coding_gene FALSE TRUE AT1G79540.1 pentatricopeptide (PPR) repeat-containing protein similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to Os09g0110200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062570.1); similar to Os07g0300200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059422.1); similar to PPR protein [Oryza sativa (indica cultivar-group)] (GB:ABC42330.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.122569502338529 0.713961987333495 0.490282381218354 1 -0.358277973161850 7.03053950078973 0.122569502338529 0.249622614366515
AT1G24390_at 2.06129409262798 1.35649089638176 1.95545646495775 1.47685410759665 1.24259380479964 1.85462059752436 1.61369366360556 1.66253579355371 1.61991916728932 1.66685623193893 1.40685970129314 1.70762273688233 1.55508004410199 1.44365568200018 1.72948640936093 1.57092859559670 2.13823225784646 1.94860366557223 1.06675282325107 0.184350066944806 0.186415465394828 0.184732473912782 0.189653223841952 0.192182860245128 0.186685697685075 0.204896387942633 0.186181311684766 0.185260344463222 0.187192423115941 0.193047944263635 0.185188568475775 0.197675622772879 0.188285675120854 0.187023663534314 0.188066613972353 0.199754331896457 0.191048250190455 0.188554504531134 1 1|0 +|/ 8648198 8648784 8648518.375 8648190 8648984 + gene protein_coding_gene FALSE TRUE AT1G24390.1 unknown protein 0.09763009729966 0.713815511398424 0.490369407362788 1 -0.358378800109647 3.22230978300168 0.09763009729966 0.181729654636161
AT1G64190_at 9.17683993643788 9.24127915640246 9.05793340063824 9.22421870443772 8.93479560513693 9.00912042315104 9.27342307281986 9.47039466696137 9.23196856040561 9.1182492278664 9.33779463169217 9.40379323045301 9.12504870008416 9.30939746066329 9.24191305494553 9.26254671190436 8.8486901171785 9.12483442362596 8.93666947847375 0.0822251025588658 0.0791396891676133 0.0826281980257367 0.0781902982135233 0.0792047514456243 0.0823405980564421 0.0853191632156396 0.0787883927163806 0.0931539510115027 0.0840064889544039 0.0805624768301062 0.077613680852828 0.0858159934504208 0.0788728057257203 0.0795644456508296 0.079251239662518 0.0944986669532198 0.081582330258323 0.0826328067499843 1 1 - 23829216 23829703 23829414.636 23828991 23830799 - gene protein_coding_gene FALSE TRUE AT1G64190.1 6-phosphogluconate dehydrogenase family protein similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT3G02360.1); similar to cytosolic 6-phosphogluconate dehydrogenase [Spinacia oleracea] (GB:AAK51690.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96861.1); similar to plastidic 6-phosphogluconate dehydrogenase [Spinacia oleracea] (GB:AAK49897.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal; (InterPro:IPR006114); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal extension; (InterPro:IPR012284); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain 6-phosphogluconate dehydrogenase, decarboxylating; (InterPro:IPR006113); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal core; (InterPro:IPR012283) -0.0614219862056444 -0.713815148499333 0.490369622984795 1 -0.358379049888607 18.324691310865 -0.0614219862056444 0.0477471593889279
AT3G42430_at 1.32372531627033 1.55768814370546 1.73384549528963 1.62961481620756 1.35417476285285 1.63053309222306 1.58463228664949 1.33048645601885 1.30282595424797 1.99007925887046 0.943507311043372 1.59196486205405 1.69217516779766 1.64318470000923 1.30159295091213 1.38909151552465 2.13847582160956 1.74279946211389 1.38418259532744 0.164993235796998 0.164490558699469 0.163211710476756 0.168991084815359 0.165430891299383 0.164668758841253 0.167554938781420 0.170023734398918 0.163211710476756 0.169077710070135 0.171261913470711 0.167579321520733 0.163211710476756 0.172396347895100 0.163211710476756 0.166181219334411 0.166926226934835 0.17327925850506 0.172900775148087 3 0|3 /|+ 14554792 14555471 14555351.375 14554366 14555496 + gene protein_coding_gene FALSE TRUE AT3G42430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G37045.1) 0.0671143476916786 0.713812273917412 0.490371330963373 1 -0.358381028423769 3.07527666783467 0.0671143476916786 0.0786526628603575
AT4G15740_at 3.31061409957279 3.14776443667426 2.99526524174311 3.17006406502289 2.37460420057005 3.36616723352849 2.8746411086498 3.32060421652469 3.30774282864074 3.42453529684225 3.23528510990429 3.00738128593257 3.54438278307548 3.19598357246425 3.37735111185217 3.26695788030166 3.84527914980081 3.48864359806471 3.42638551624260 0.192821347812346 0.196256769036252 0.200273448940696 0.199957478203221 0.204731273113322 0.199947520920664 0.196340193270196 0.192821347812346 0.197616206164119 0.194365891210027 0.194503610391190 0.196558476328967 0.195066469252005 0.201091535552042 0.205991274014318 0.200111274459866 0.197631859980313 0.196151668400038 0.199782974354934 4 4 - 8964959 8965402 8965189.636 8964743 8966316 - gene protein_coding_gene FALSE TRUE AT4G15740.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G16510.1); similar to SRC2 [Glycine max] (GB:BAA19769.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.101471966311643 -0.713811080385364 0.490372040120499 1 -0.35838184991333 6.44815521295227 -0.101471966311643 0.192639845761972
AT2G22320_at 1.07871855290098 1.13936176732066 0.854647505432314 1.13845280420891 0.8874021451831 0.491131099236834 0.774539523884662 1.21916612517858 1.00674253738206 1.16428479536690 1.02063098153747 0.665481237928205 1.22911897847783 1.10815084534217 0.964044293878632 0.88051642927877 1.64773630329725 1.18237118277852 0.917752786605539 0.182775059993908 0.179617920122404 0.174408560305165 0.184542587981085 0.174408560305165 0.183189329335487 0.176821315972473 0.180365238734891 0.185635709821535 0.189878954761006 0.177930502414306 0.174408560305165 0.187022587350138 0.182464512176171 0.179408101421792 0.178699804688238 0.182984366442245 0.184979772436120 0.184868698479274 2 2 + 9487188 9487466 9487363.273 9487185 9487520 + gene protein_coding_gene FALSE TRUE AT2G22320.1 unknown protein -0.0761875976796212 -0.713608798276227 0.490492238539411 1 -0.358521059610878 2.00635226775976 -0.0761875976796212 0.114653985115236
AT1G62940_at 1.54675265182103 1.41171256320063 1.46174610911569 1.60018761098723 1.15890608668756 1.51391026441944 1.52779369843656 1.36850161063169 1.78746971253559 1.47422872496989 1.70854032960609 1.68535855220317 1.48534641471344 1.50714693312038 1.09983763763482 1.46044201744009 1.15256902038744 2.14367189744751 1.63728908532762 0.186766652940441 0.179872206552934 0.186426277658727 0.185871053241216 0.183111949784688 0.178407887347265 0.180944154061536 0.179524439056646 0.183016455872923 0.190210708603126 0.182097268517853 0.186222336809190 0.183207591984878 0.178407887347265 0.186136879910326 0.178407887347265 0.183500489782284 0.180647309861966 0.183501486665846 1 1|0 +|/ 23315705 23316335 23316037.4 23314200 23316412 + gene protein_coding_gene FALSE TRUE AT1G62940.1 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4-coumarate:CoA ligase-like [Nicotiana sylvestris] (GB:AAO25511.1); similar to OSJNBa0033H08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD37124.3); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.0663171769226228 -0.713266926516023 0.490695423921262 1 -0.358756253252522 3.03036879504422 -0.0663171769226228 0.075194951830482
AT3G12510_at 1.49106451557360 1.29540406812018 1.20343193876486 0.988255661805815 1.28690415358138 1.60789819035244 1.23315576343695 1.08874426331629 1.73471517515555 0.857876589384253 1.32691443679562 1.46368473853571 1.50466283586757 1.3034707018573 1.56734384567321 1.38019520080179 1.54104548307433 1.50068875439628 1.33374985913858 0.176979528039528 0.182867223481745 0.18032297246644 0.178136398841523 0.188482230116824 0.180574204944326 0.183091559292408 0.177315652973883 0.184464619283752 0.180229599920249 0.174542913730412 0.184576222504979 0.181300178008984 0.179722860782852 0.175537854624624 0.175687941043888 0.184800933112915 0.175393698834615 0.186486167801378 3 3 + 3967225 3967617 3967393.091 3967102 3967829 + gene protein_coding_gene FALSE TRUE AT3G12510.1 similar to AGL56 (AGAMOUS LIKE-56), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G60880.1); similar to At3g12510-like protein [Boechera stricta] (GB:ABB89768.1); contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF13) 0.0671252709567339 0.71308131570872 0.490805760043909 1 -0.358883903147389 2.65299796479462 0.0671252709567339 0.0790152688228263
AT1G18210_at 9.61087877625002 9.7533332062367 9.20202210311513 9.37479706946091 9.01177060483799 9.21472024698078 8.11465378591607 8.23453492897733 8.70032192138142 8.04287271937763 7.80177898115891 8.25275202898231 7.3535060558255 8.03708047996671 8.00752081461114 8.51422853284897 7.6987452816657 8.37665725123416 7.71396034246277 0.147778182891183 0.143415948478131 0.140089938701018 0.141125606590664 0.141964966642412 0.145851585927946 0.144232594972049 0.140888364319184 0.141081867145981 0.143188990420030 0.148804018437109 0.139750438371093 0.147444846523795 0.144856669918919 0.145469304638242 0.138247825700755 0.156125596193341 0.149230109028929 0.154637587249029 1 1 - 6268353 6268662 6268508.364 6266602 6268821 - gene protein_coding_gene FALSE TRUE AT1G18210.1|AT1G18210.2 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G73630.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0626880078165399 0.71301733813902 0.490843794964505 1 -0.358927895403885 17.1434231765688 0.0626880078165399 0.0562639274945513
AT1G10930_at 2.70196007284264 2.94756326774055 2.6156591679195 2.51457901079425 2.56315934490634 2.79359594041829 3.26067825893693 3.57266958352751 2.04056565361972 1.742967968706 2.15866834388833 3.23792090498252 2.73394745936424 2.70232018605981 3.28651386031096 2.49688451047629 2.49891931830815 2.03317052986324 2.24450537908772 0.283087957789897 0.280726901528039 0.277786010013255 0.280722597815093 0.277786010013255 0.291926777152808 0.280629378080623 0.284889383418931 0.299994049062633 0.293040493833031 0.279975969438784 0.283285965907052 0.277786010013255 0.277786010013255 0.294439272897659 0.287297486193696 0.301122357399420 0.277786010013255 0.289417292278241 1 1 - 3649262 3649918 3649610.857 3647894 3655590 - gene protein_coding_gene FALSE TRUE AT1G10930.1 ATSGS1/RECQL4A; ATP-dependent helicase DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. similar to RECQL4B (Arabidopsis RecQ helicase l4B), DNA helicase [Arabidopsis thaliana] (TAIR:AT1G60930.1); similar to OSJNBa0088K19.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE03209.2); similar to ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE87713.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain HRDC; (InterPro:IPR002121); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent DNA helicase RecQ; (InterPro:IPR004589) 0.0676136877999484 0.712755747513492 0.490999330465085 1 -0.359107733227493 5.19767781736634 0.0676136877999484 0.0813500024779376
AT2G07440_at 2.34674628354289 2.55626882449772 2.52768950908416 2.71146874586330 1.71185069928819 2.26977445110895 2.12000537729638 2.23309072166611 2.94743185036846 2.65422158584725 2.62359884110689 2.20811942316946 2.58644939588496 2.60252529121439 2.71076012412001 2.47447525075832 2.81615988664714 2.70829435844409 2.59387552013777 0.174648302081437 0.180525010552887 0.183282775306216 0.180361967729090 0.179328874025593 0.185148543675207 0.181841507285741 0.18345533092417 0.175594388529462 0.174648302081437 0.174648302081437 0.175119469740507 0.175351676665470 0.185032921158738 0.174648302081437 0.176009937057696 0.182915790959189 0.175930601549389 0.177347644239331 2 0|2 /|- 3093842 3094076 3093932.5 3093818 3094747 - gene protein_coding_gene FALSE TRUE AT2G07440.1 two-component responsive regulator-related / response regulator protein-related similar to ATRR3 (RESPONSE REGULATOR 3), transcription regulator [Arabidopsis thaliana] (TAIR:AT2G41310.1); similar to SRR198 [Striga asiatica] (GB:ABG35780.1); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.0746885572238127 -0.712486410264507 0.491159503534286 1 -0.359292834348844 4.97118222997812 -0.0746885572238127 0.109687407127894
ATCG00430_at 9.85383341326706 10.6672265768125 10.3665498472431 10.2888131417837 9.87394982469285 9.03561665393547 10.5952777963803 10.5436149339836 10.5506946629467 10.8517635373442 11.0685439568417 11.6670607060020 11.1792365820171 11.0286233017056 10.1531348668944 11.1643630448127 10.6216693315957 11.0552120948407 10.6323137404547 0.121430862806933 0.117363720849338 0.128284489839767 0.121799634494164 0.119763558134816 0.126406672587099 0.120252431941592 0.119211024226575 0.126499700159525 0.120629466648242 0.120212026116826 0.115847760735818 0.117593405117538 0.121223566504189 0.131253065847139 0.118667357093997 0.123727835027015 0.124484406027555 0.118640316374465 C C - 49267 49831 49552.909 49257 49934 - gene protein_coding_gene FALSE TRUE ATCG00430.1 Encodes a protein which was originally thought to be part of photosystem II but its wheat homolog was later shown to encode for subunit K of NADH dehydrogenase. Identical to NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain K) (NADH-plastoquinone oxidoreductase subunit K) (ndhK) [Arabidopsis Thaliana] (GB:P56756); similar to NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G11770.1); similar to NADH dehydrogenase 32 kDa subunit [Forsythia europaea] (GB:ABG74735.1); contains InterPro domain NADH ubiquinone oxidoreductase, 20 kDa subunit; (InterPro:IPR006137); contains InterPro domain NADH dehydrogenase (ubiquinone), 20 kDa subunit; (InterPro:IPR006138) -0.104891320595106 -0.712328170390888 0.491253622689424 1 -0.359401554674286 20.9883541730976 -0.104891320595106 0.202786027354504
AT1G01670_at 3.02709598509576 2.67796065764331 3.59424377972454 3.56282428803138 2.36012576035512 2.47842421796538 3.19703881609249 2.50450279975666 3.11488420306594 3.48338919268599 3.16079537228937 2.73493549255034 3.2779567014068 2.74696166200703 3.36585583667904 3.75144771716484 3.26035901025628 2.54162983548481 3.65229341638569 0.207830295361036 0.202024196315034 0.209802096077302 0.198714415713486 0.198788085816384 0.207842220280319 0.198714415713486 0.198714415713486 0.202733759570636 0.201238470052489 0.198714415713486 0.201226209244628 0.212228901855242 0.199129963690153 0.204510619725406 0.198714415713486 0.209098339142958 0.202855500081827 0.207280662189471 1 1 - 242964 243609 243213.455 242843 245988 - gene protein_coding_gene FALSE TRUE AT1G01670.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G61390.2); similar to putative arm repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAK43506.1); similar to Os10g0552400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065331.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains InterPro domain U box; (InterPro:IPR003613) -0.082303976847005 -0.712247305403431 0.491301724475413 1 -0.359457105361878 6.18620119184592 -0.082303976847005 0.135876381698949
AT3G01930_at 2.76847597459440 2.76745352944948 2.75702319982282 2.88065225183406 3.86221371733496 3.17157279506677 3.03722848296453 3.00907614654995 3.02334797595863 2.38304097321213 2.68850510284937 2.51651057905806 3.09240974508413 2.60035600214362 2.34745820237711 2.60091450784448 2.61253242050334 2.74236635316118 2.89293254103352 0.224153829527819 0.215498637110208 0.217889101962563 0.218825801710564 0.227167110765400 0.225972658594769 0.212461517706917 0.221563193147311 0.233407033817612 0.214800842365839 0.229694409907463 0.216854363416976 0.230328875521797 0.212978460169687 0.220948975050774 0.214096041072447 0.225336760112962 0.223201837529995 0.222441449138466 3 3|0 -|/ 319354 319924 319623.6 319068 321567 - gene protein_coding_gene FALSE TRUE AT3G01930.1|AT3G01930.2 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT5G14120.1); similar to nodulin-like protein [Poncirus trifoliata] (GB:AAN62343.1); similar to Os08g0532400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062339.1); similar to Os04g0388700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052632.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) 0.0779990375089812 0.712200236779967 0.491329724139329 1 -0.359489436809239 5.73999806763333 0.0779990375089812 0.121516247549428
AT3G17680_at 1.62400360847918 1.74378420682494 1.84520185576195 1.74015904577284 1.59392392763572 1.88853510053519 1.95527023715162 1.62171118215605 1.99001918409614 2.34687350397137 2.18986747870141 2.17876059736764 1.84150401506915 2.25803334348164 2.86031326998555 2.17505784416997 1.97019639508449 2.61142256695682 2.131372813198 0.178507340961848 0.182062674937527 0.190220775788489 0.181478762768396 0.179439635224715 0.179776475168633 0.179602642808933 0.179547242659754 0.184066569184054 0.182797152148230 0.18334485176848 0.191729340671119 0.183463166328657 0.182775410491322 0.184088851013939 0.178620320188834 0.188586426563205 0.180208458368892 0.187133539605156 3 3 - 6043153 6043707 6043396.273 6042953 6044510 - gene protein_coding_gene FALSE TRUE AT3G17680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48405.1); similar to Putative kinase interacting protein, identical [Solanum demissum] (GB:AAU90326.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) 0.0676593061018626 0.71216534854506 0.491350478699879 1 -0.359513400298407 3.95994011517665 0.0676593061018626 0.081801746101027
AT1G04360_at 2.50140177476521 2.27067001486787 1.96008441163411 2.06879508761310 2.07940477532444 2.78210311138188 2.41012840977056 2.14855715485964 2.3292266450149 2.27627461354995 2.38193424166686 2.78934306617372 2.58333351085242 2.18823984316267 2.63701926694549 2.04152905240564 2.25678503184244 1.80671117918950 2.56700285296982 0.224684238862335 0.220530940211302 0.240026098198347 0.231514282869082 0.230868986802287 0.225150173375023 0.228316782084451 0.220530940211302 0.23139547713513 0.222630763340053 0.225046312881743 0.224795784057796 0.235539912701594 0.226421404594728 0.224656134000086 0.220814284931001 0.230529245950625 0.230288476526969 0.240735673534087 1 1 - 1167633 1168079 1167915.273 1167456 1168877 - gene protein_coding_gene FALSE TRUE AT1G04360.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1A (ATL1A) [Arabidopsis Thaliana] (GB:P93823); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G43420.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE96713.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0826576484462431 -0.71215130165456 0.491358835165608 1 -0.359523048308763 4.64086639396447 -0.0826576484462431 0.137058816197200
AT1G44910_at 5.12340882202481 5.54732423399872 5.94562843547756 5.38478124698955 5.56615592005451 5.27461968667988 5.09611100662634 4.8508482638944 6.01176139071923 6.46234612923596 5.86487670159789 6.32931901392675 5.84411856117432 5.7970414481574 5.68774899360865 6.14306933570183 5.8246118836049 5.52046351065123 6.81857870512029 0.265832783639623 0.279047332734560 0.263616372771961 0.283631964232314 0.267366144267776 0.281338064982036 0.266027621968595 0.263281838995394 0.282418319088412 0.275365534684455 0.262421069800525 0.274873266922967 0.273986495550188 0.263551174151421 0.262421069800525 0.270885482051732 0.264669177420129 0.266306893852089 0.26470372142848 1 1|0 +|/ 16984404 16985212 16984900.2 16978044 16985405 + gene protein_coding_gene FALSE TRUE AT1G44910.1 protein binding similar to FF domain-containing protein / WW domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19670.1); similar to Os01g0532200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043246.1); similar to formin binding protein 3-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87484.1); contains InterPro domain FF; (InterPro:IPR002713); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.0830579933206566 -0.712076642357702 0.491403251288481 1 -0.359574324646777 11.5022604966739 -0.0830579933206566 0.138378932187764
AT1G16240_at 10.2753601451446 10.5341287323515 10.3736001833742 10.4364625172240 10.5725980509516 10.7452644211167 9.745204046847 10.1472078736805 10.5083078368748 10.1269679272751 10.2607045999374 10.0003280911785 10.2209600539542 10.2333309386781 9.7285104717354 10.2102433858765 9.97082884292397 10.0417886762628 10.2689062486602 0.0967654255787433 0.0988115290062893 0.104848124299856 0.0987290133914256 0.101505199949523 0.104763010082370 0.101179832598978 0.0986714694695026 0.102573311600115 0.106834035133673 0.101447802260614 0.100640144583916 0.0967654255787433 0.106816974803731 0.103640728645633 0.0967654255787433 0.110471492213868 0.100980382447031 0.103961299730005 1 1 - 5555199 5556194 5555625.182 5555001 5556835 - gene protein_coding_gene FALSE TRUE AT1G16240.1|AT1G16240.2|AT1G16240.3 SYP51 (SYNTAXIN OF PLANTS 51) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. Identical to Syntaxin-51 (AtSYP51) (SYP51) [Arabidopsis Thaliana] (GB:Q9SA23); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to Os02g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045701.1); similar to syntaxin of plants [Medicago sativa] (GB:AAZ32890.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012)|similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to Os02g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045701.1); similar to syntaxin of plants [Medicago sativa] (GB:AAZ32890.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.069224485979523 0.711948061707994 0.491479751943216 1 -0.35966262301525 20.5460936897555 0.069224485979523 0.0886360254005773
AT3G53670_at 5.13911924298283 5.41070022940251 4.90370480623304 4.69804966063474 5.41359110172473 4.62297039250176 4.09190967118031 3.73702177452223 4.52707076688584 3.93456361563746 4.07822359753087 4.51687895717305 4.02660588942121 4.30023249700614 4.01228606225927 4.0765947975657 3.97610037388226 4.07259166399469 4.33849224250195 0.159281186950602 0.15995110304054 0.153728861111439 0.153640221587412 0.150549907636880 0.152984379550858 0.149070808665033 0.152508020363237 0.153551616441309 0.150048779201775 0.150936487575344 0.147303305680232 0.153158676937111 0.149571586139085 0.147774076502914 0.146912860406767 0.147855851665826 0.156100613042577 0.151969934416084 3 3 + 19901720 19903164 19902194 19901399 19903380 + gene protein_coding_gene FALSE TRUE AT3G53670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37480.1); similar to hypothetical protein MtrDRAFT_AC125368g26v1 [Medicago truncatula] (GB:ABE93949.1); similar to hypothetical protein MtrDRAFT_AC135797g8v1 [Medicago truncatula] (GB:ABE82095.1) 0.0903108077986665 0.711487083638717 0.491754076622677 1 -0.359979065438422 8.95170741232905 0.0903108077986665 0.161143239493539
AT1G22930_at 10.3929956212388 10.3677729162066 10.7303941575311 10.6888271938596 10.8084786492171 10.3150395111867 10.0880964181984 10.0786954701302 10.2401946793305 10.3117170836449 9.58328514672908 9.39876524528428 9.8930536109053 9.8966585282632 8.61132644931208 10.3647784278117 10.1377917335107 9.67264897311536 10.1548809210621 0.124131442794071 0.117212672665429 0.128451658245269 0.124357296501782 0.119513978800616 0.128658425461887 0.121250466875332 0.117259892562690 0.138202963656529 0.114846920830082 0.119761171176717 0.116382810686830 0.116797602711770 0.121817620171109 0.133871669994979 0.117337318119183 0.130296000045337 0.123049435440080 0.11682598649363 1 1|0 +|/ 8121184 8121809 8121582.556 8117386 8122116 + gene protein_coding_gene FALSE TRUE AT1G22930.1 T-complex protein 11 similar to T-complex protein 11 [Arabidopsis thaliana] (TAIR:AT4G09150.1); similar to OJ000114_01.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE03125.3); similar to Os02g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047132.1); similar to H0525C06.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66841.1); contains InterPro domain T-complex 11; (InterPro:IPR008862) -0.0685071377370972 -0.711395644723624 0.491808502412511 1 -0.360041812450583 20.3989805300522 -0.0685071377370972 0.085820904510008
AT3G17360_at 0.667900670178935 0.948406258691468 0.934597814070946 1.09689086742456 0.687902406863317 0.907142463541645 0.865766573707241 1.00439433114506 0.664012932983096 1.24070267516973 1.12000840362689 0.971726542944906 0.872828328841446 1.12261715214931 1.42574101079534 1.02621057016135 1.05969527699751 1.19728729647431 1.10643847758964 0.192535849377429 0.188143231360498 0.194313589347053 0.187171573748260 0.193534074915813 0.193864012888222 0.185918500011797 0.184578042888315 0.199755759512335 0.195501913405196 0.187960524941398 0.184578042888315 0.202205286610873 0.184582425068745 0.189000529163763 0.184578042888315 0.194096547752228 0.194679920710511 0.194472469955073 3 3 + 5945137 5946150 5945657.727 5936114 5946472 + gene protein_coding_gene FALSE TRUE AT3G17360.1 POK1 (PHRAGMOPLAST ORIENTING KINESIN 1); microtubule motor PHRAGMOPLAST ORIENTING KINESIN 1 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK1 constructs were more limited than those for POK2; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls. We propose that POK1and POK2. similar to POK2 (PHRAGMOPLAST ORIENTING KINESIN 2), microtubule motor [Arabidopsis thaliana] (TAIR:AT3G19050.1); similar to Kinesin motor domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99145.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.0654063618562503 0.710979203192675 0.492056421268696 1 -0.360327489791216 1.94074134886775 0.0654063618562503 0.0718346298997595
AT3G47180_at 2.05397206967727 1.93580323098220 2.00621747638682 2.14588055477303 1.49783320597613 1.70356690191105 2.00881995511657 2.01236940347684 1.95044309932519 2.65345082097812 2.27457636691484 2.46331525381224 2.29754075581459 2.14650253801459 2.93750264665325 2.38665919259388 2.12491654949427 2.18304491820468 2.32514191572146 0.207251151623411 0.214677661570560 0.203763716913048 0.204368363288626 0.214774732923694 0.205208764361429 0.206069214189247 0.206214452655436 0.205822394546632 0.208409764975716 0.204182800414776 0.203441403296667 0.204081847550954 0.211037333031535 0.199519019303149 0.200129234188447 0.20484394817454 0.200602343932916 0.201005705421514 3 3 - 17383870 17384366 17384079.455 17383785 17384532 - gene protein_coding_gene FALSE TRUE AT3G47180.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G19910.1); similar to Os08g0548300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062434.1); similar to hypothetical protein [Cicer arietinum] (GB:CAC10211.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0611439821859636 -0.710751638987986 0.49219192873535 1 -0.360483534057565 4.25127579463551 -0.0611439821859636 0.0476477669906218
AT1G63430_at 6.6876764335967 6.95915768801312 6.31339650259616 6.45766542258991 6.99338639962461 6.44186069096634 6.62141597723542 6.98049321053069 7.20253326029596 6.89128656572813 7.5444466506303 7.09892167629778 6.66296192201644 7.37982447850335 7.28883278082111 7.29515346898746 6.57303952507549 6.89541187171169 6.8756976804572 0.200179677020630 0.187707963497301 0.198434001893368 0.201596033266350 0.187707963497301 0.193012777649216 0.202324486241585 0.194184097280947 0.208911476505985 0.190328833852948 0.191159029774006 0.195358399984620 0.193561399057689 0.187707963497301 0.193884096972362 0.188725511350593 0.200704839006879 0.214747870579407 0.189761068070168 1 1 + 23529242 23530059 23529788.222 23526273 23530435 + gene protein_coding_gene FALSE TRUE AT1G63430.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G41180.1); similar to H0306F12.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86176.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0790618477356855 -0.710716952264429 0.4922125856185 1 -0.360507315307420 13.7229631484354 -0.0790618477356855 0.125704013138183
AT1G32150_at 6.06731351281199 6.1140497394532 5.8676572277757 5.96425537703104 6.17943699392366 6.40911198914334 6.05780316416417 6.31078202121228 5.06207438121074 5.05658834361326 5.18187249243943 5.55744960257573 5.53433314195416 5.3503895063843 5.38118050043685 5.28090417069125 5.32926862894408 4.85322610039891 5.32923984334496 0.195727443749237 0.198876783119066 0.194987237495791 0.19402370175711 0.198259557634156 0.199543313621151 0.199118323325112 0.199596071397085 0.200099291762555 0.202280494761369 0.194291343335782 0.19402370175711 0.196087903412633 0.19402370175711 0.19402370175711 0.19402370175711 0.205728953806247 0.200095350019121 0.19402370175711 1 0|1 /|+ 11567522 11568217 11567698.333 11565498 11568511 + gene protein_coding_gene FALSE TRUE AT1G32150.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G35530.1); similar to G-Box binding protein 2 [Catharanthus roseus] (GB:AAD42938.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0634527247398983 0.710392782117545 0.492405663406618 1 -0.360729515904522 11.3502406902066 0.0634527247398983 0.0619778270777145
AT4G15130_at 7.20879358404001 7.44792332979107 6.72530908309514 6.72776166854396 7.547658279467 7.33545785215448 7.00626971308282 6.01274066780798 6.12695609978279 6.24552334891967 5.65052057148283 6.27376245523991 5.98145873863665 6.61665113447676 6.04562048680301 6.21013290050125 5.9855023676299 5.53885214434614 5.65571215337586 0.227749181768930 0.219600869589558 0.241844758459984 0.222949408932725 0.223882775287102 0.223609387381890 0.222350019971889 0.234064858448922 0.220763757984668 0.225992886025917 0.225089937577394 0.222368592309301 0.225113821768554 0.225827200496138 0.223900473736868 0.225139917832996 0.217036901445181 0.226295097903856 0.224749842498214 4 4|0 +|/ 8638290 8639336 8638972.9 8637663 8639580 + gene protein_coding_gene FALSE TRUE AT4G15130.1 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative similar to cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G32260.1); similar to CTP:phosphocholine cytidylyltransferase [Brassica napus] (GB:BAA09644.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.0967651481657328 0.710308750012924 0.492455721032988 1 -0.360787100268918 13.0250941725390 0.0967651481657328 0.180617844507913
AT3G05530_at 10.1143588776916 10.1090142624570 10.2958763032684 10.3129028460413 10.4502252733519 10.2720737301658 9.94526225909867 10.0289483952451 9.91065779996728 10.0273627108581 9.92247440874793 9.76653214890852 9.8561921284825 9.80588958313357 9.72232364127085 9.85781581322302 9.62813678925748 9.90656816476177 9.98043685598372 0.0855414018914698 0.0819375137322888 0.0860039766601904 0.0852324147195742 0.0895034754505107 0.0905765050382387 0.0895746815705754 0.0879984834545722 0.0977053307998065 0.0895319402140863 0.0895917692311445 0.0819375137322888 0.0872775922615632 0.0865038711525875 0.0881323401716484 0.0819375137322888 0.0944476465937902 0.0904775735260687 0.0873966218081664 3 3|0 +|/ 1604873 1605947 1605454.222 1603406 1606237 + gene protein_coding_gene FALSE TRUE AT3G05530.1 RPT5A (regulatory particle triple-A 5A); ATPase/ calmodulin binding a proteasome non-ATPase regulatory subunit similar to RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B), ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G09100.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABE80601.1); similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (GB:O23894); similar to Tat binding protein like protein [Brassica rapa] (GB:BAB21595.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0593980260186371 0.710139580985841 0.492556503878385 1 -0.36090300740055 20.0816130969114 0.0593980260186371 0.0342017532987878
AT1G75870_at 2.16536223559094 1.90554241361462 2.42772198834389 1.9197062129075 1.87991563276459 2.46941833057327 2.07238261590146 1.73496663192584 3.07773640342047 2.27162189710026 2.08316938208576 2.03662566568463 2.34811141065298 2.42335689143215 2.42436017855329 2.74148335776434 3.02585283209319 3.03467928693274 2.28298172045115 0.181056794275808 0.183508177687721 0.187445014809855 0.178917609462133 0.183142248155062 0.178917609462133 0.180570795818897 0.181178057426514 0.183196104338317 0.178917609462133 0.179265974530839 0.182571110627202 0.185384924570113 0.179169870082781 0.186662176306466 0.188974609282744 0.190514392997382 0.188616691838168 0.180401850748249 1 1 + 28490199 28490751 28490498.364 28490106 28491054 + gene protein_coding_gene FALSE TRUE AT1G75870.1 unknown protein 0.0876093011075122 0.709911639717617 0.492692320406804 1 -0.361059143168913 4.60128611568968 0.0876093011075122 0.153517078539980
AT1G51620_at 1.91971144621846 1.60386493421608 1.32727124381654 1.28345968598544 1.10056258682956 1.33371972327708 1.09654723642706 0.694286857925644 1.62300757982927 0.588635331832704 0.990070481401868 0.96531049987031 0.718997688614675 1.0418987313567 1.49403878385257 0.842260909513938 1.09415926446039 0.985613703993065 1.06310774305595 0.196511571903515 0.202302380191486 0.200631442888771 0.199194065211507 0.191483924081388 0.191483924081388 0.192921023274455 0.194704120717274 0.200082881257944 0.204584456779573 0.195116232997921 0.194166266886634 0.196985536408752 0.201468882452002 0.191599295931765 0.191483924081388 0.194090373097226 0.198807867039335 0.20197385922542 1 1|0 +|/ 19144700 19145204 19144987.2 19143798 19145455 + gene protein_coding_gene FALSE TRUE AT1G51620.1 protein kinase family protein similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51805.1); similar to receptor-like protein kinase [Arabis gemmifera] (GB:BAC80241.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.07119455120468 -0.709629149619202 0.492860671138102 1 -0.361252580996958 2.34899161906477 -0.07119455120468 0.0975657169355383
AT4G04650_at 1.81075642331522 1.95986742836602 2.07637038874421 1.93753921481537 1.43272385587158 1.94035754176800 1.64960816055673 2.02347712248727 1.73053416665916 1.89885177939849 1.57269260841585 1.57815582071051 2.03387549265182 1.50486268795352 1.55432850096423 1.82174223636542 1.39738772808945 1.82806779738628 1.76681438150973 0.224356715258071 0.226176666800769 0.224356715258071 0.230127469498901 0.227940091383551 0.226000536702853 0.224356715258071 0.226909831084047 0.239340317579673 0.233100597941700 0.226285879574572 0.228954256553367 0.224656975411597 0.231458441896024 0.229971227956269 0.228429669952442 0.231781827983290 0.227892147551779 0.231553593187759 4 4 - 2354075 2354766 2354527.636 2353987 2355211 - gene protein_coding_gene FALSE TRUE AT4G04650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43730.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009) -0.0757619334184206 -0.709611017819212 0.492871478035935 1 -0.361264994543279 3.58389879278535 -0.0757619334184206 0.114658104588725
AT2G28755_at 1.89362298058450 1.53481045883523 2.08109142856066 1.84574870325803 1.34201749832716 1.95821722291381 1.8175261190932 1.89516743285669 2.40441398576623 1.98419206005155 2.38540652656101 2.16879544204592 1.84050132502027 2.00515309315526 1.83427684151680 2.03754924741621 1.88726849448591 1.71879979298466 2.11235802215779 0.178971164235645 0.173529076407464 0.176390018219078 0.173529076407464 0.185774383666708 0.182975540057144 0.181262486840857 0.176902771651489 0.182522947175448 0.174033838977443 0.175526452459468 0.185535208008752 0.176593194421149 0.175214844685976 0.179144478769044 0.179907025055274 0.180984596355253 0.178532882583514 0.176142795927653 2 2|0 -|/ 12341263 12341512 12341454.4 12341249 12341536 - gene protein_coding_gene FALSE TRUE AT2G28755.1 UDP-D-glucuronate carboxy-lyase-related similar to UXS6 [Arabidopsis thaliana] (TAIR:AT2G28760.3); similar to UDP-D-glucuronate carboxy-lyase [Pisum sativum] (GB:BAB40967.1); contains domain DTDP-GLUCOSE 4-6-DEHYDRATASE (PTHR10366:SF35); contains domain NAD DEPENDENT EPIMERASE/DEHYDRATASE (PTHR10366) -0.0803911059188792 -0.70946195997468 0.492960324847546 1 -0.361367032907889 3.87187866458205 -0.0803911059188792 0.130637692071350
AT1G64620_at 3.46232576754427 3.50357089259081 4.58973043801313 4.39685103607440 4.88335498828181 4.3425633365897 6.23405485545783 5.6008011878742 3.92475677706134 4.27134190040776 4.10349216241058 4.01786819649632 4.38817214210345 4.80301558227282 3.66963948573355 4.3681648016747 4.99022462866473 4.14790751719636 3.78141022172323 0.246331179110529 0.244832974112775 0.260725900529794 0.250658975199124 0.247152868503654 0.264766467467371 0.249016050846994 0.245360724645342 0.270127466142442 0.264261118885842 0.246003615214036 0.247532230727149 0.251196490854834 0.252011265548854 0.250792131610144 0.245868542167453 0.258892993194302 0.253547270839325 0.25050398215649 1 1 + 24011559 24012095 24011775.636 24010655 24012357 + gene protein_coding_gene FALSE TRUE AT1G64620.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF1.8 (AtDOF1.8) (DOF1.8) [Arabidopsis Thaliana] (GB:Q84JQ8;GB:Q8LFE3;GB:Q9SGV3); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G24060.1); similar to Dof zinc finger protein [Nicotiana tabacum] (GB:CAA08755.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.0857471860223009 0.70894889072215 0.493266217778623 1 -0.361718108975559 8.77843832828652 0.0857471860223009 0.148097734691101
AT1G35040_at 2.12900982502979 2.63270895999539 2.61510298676173 2.84527123983200 2.25502424600929 2.79390587501595 2.25705364515081 2.66357970566838 2.82383167699007 2.91118390208753 3.02738493684091 2.20646226867409 2.39047867897569 2.6694634226468 2.23817354470050 2.5613211695085 2.32617564390649 2.74071829009095 2.96543331728085 0.189255206046705 0.192351624320946 0.182723310962686 0.183909535515082 0.201924365328593 0.191427590232176 0.196323733353362 0.191719715465230 0.19579196509237 0.190106480337775 0.189874995159170 0.197660678370524 0.186645482530433 0.188207453992484 0.182723310962686 0.182723310962686 0.182723310962686 0.190402707594098 0.198911931431679 1 1|0 +|/ 12812163 12812460 12812355.75 12812135 12812547 + gene protein_coding_gene FALSE TRUE AT1G35040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34910.1) -0.08669466737892 -0.708831519307606 0.493336211180198 1 -0.361798389988840 5.23404299870165 -0.08669466737892 0.151098336058841
AT1G67860_at 11.8692565043191 11.8197695477072 12.4583152130329 12.4511163692037 12.3899554106409 12.2386596356668 12.4208456512802 12.4490199696273 12.0801960132005 12.4170707813459 12.0988706593597 11.8980500482198 12.3184606396551 11.9159552217337 11.5051760546449 12.3541388489694 12.4142689310330 12.1801658304174 12.1419533559631 0.064245690193543 0.0630976814874744 0.0651253339857007 0.0691873387616146 0.0652101428566128 0.0653751104876038 0.0640698433513782 0.0626461598035123 0.0669421428157584 0.0619811250528018 0.064371129852392 0.0634092528675132 0.0629905014652387 0.0660391822665942 0.069174909661879 0.0619811250528018 0.0680071219111705 0.0632397678415843 0.0639145395940496 1 1 - 25448627 25448815 25448716.727 25448468 25448926 - gene protein_coding_gene FALSE TRUE AT1G67860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67865.1) 0.058675567326766 0.708718165057763 0.493403814750772 1 -0.361875911877159 24.4114718690634 0.058675567326766 0.0280033172614036
AT4G07820_at 1.57737478638790 1.50484683369111 1.30990084912303 1.43218702963702 0.810547555973906 1.18497534036931 1.05057590202853 1.02612869037988 0.86443812893992 1.32823501851402 1.24168100748879 1.21085226265317 1.32194774086476 0.400147516825585 0.946503213205485 1.27536239055041 1.64376480459236 0.78360774121649 1.18855171841151 0.202360000980983 0.204356067574788 0.203278790321969 0.197966387695434 0.199478142936658 0.199555092218201 0.196850721227898 0.203005550886393 0.209913894734117 0.201249846454751 0.201267213968216 0.201833998351072 0.206620511231524 0.203387168159755 0.202669042074088 0.196193077021875 0.201827898049799 0.196193077021875 0.197308057006856 4 4 - 4636880 4637284 4637132.636 4636761 4637447 - gene protein_coding_gene FALSE TRUE AT4G07820.1 pathogenesis-related protein, putative similar to PR1 (PATHOGENESIS-RELATED GENE 1) [Arabidopsis thaliana] (TAIR:AT2G14610.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) -0.0647102399799467 -0.708639040125862 0.493451007588646 1 -0.361930018011776 2.35209626843039 -0.0647102399799467 0.0694395819172015
AT3G29035_at 8.43211396607315 8.78837274841026 9.42186939189686 9.32009858901637 10.4237991404177 10.1138308268201 8.81994970050358 8.48783594786075 6.68915750949416 7.44264481510618 4.88777813404374 1.95915463976077 7.90515416636441 6.96418735556469 2.65574554833180 7.54530980273774 9.62947619049756 5.98371672003687 6.82322807099641 0.244188024996366 0.249233234169322 0.244196505287521 0.244188024996366 0.244188024996366 0.244188024996366 0.247686951839247 0.251961499034214 0.258840046318992 0.244519368439054 0.252130649476211 0.287643056617809 0.245684688698722 0.244832006994316 0.273128776773779 0.252275976357605 0.253452133407555 0.244188024996366 0.254224739942923 3 3 + 11035617 11036191 11035961.091 11034902 11036545 + gene protein_coding_gene FALSE TRUE AT3G29035.1 ANAC059/ATNAC3 (Arabidopsis NAC domain containing protein 59); protein heterodimerization/ transcription factor Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. similar to ANAC092/ATNAC2/ATNAC6 (Arabidopsis NAC domain containing protein 92), protein heterodimerization/ protein homodimerization/ transcription factor [Arabidopsis thaliana] (TAIR:AT5G39610.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE82475.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0720682920637143 0.708411045075532 0.493587007143465 1 -0.362085891908458 15.6891465146412 0.0720682920637143 0.101448640524293
AT4G21210_at 10.6480600655280 10.6670353309187 10.7731167623056 10.6795754042199 11.0465623193651 10.5902468963509 11.4868711876787 11.1563727577406 11.1285232940134 11.1965067357412 11.5156604073099 11.3488626616635 11.2402728266145 11.4027846064025 11.6239230577552 11.3999852837212 11.2888254354091 11.4656562118282 10.8271332228678 0.0666447366319357 0.0648776231292636 0.0661673672656343 0.0646734048241757 0.0645437378811289 0.0676720073888289 0.068718513369129 0.0685662882466105 0.0736111186341756 0.0657398613534334 0.0645350688556284 0.0636956186905872 0.066240761894306 0.0669911012118307 0.0688370212929522 0.0636956186905872 0.068741479215168 0.0685490956840479 0.0643221104687276 4 4 + 11307952 11308571 11308200.909 11306955 11308752 + gene protein_coding_gene FALSE TRUE AT4G21210.1|AT4G21210.2 phosphoprotein phosphatase/ protein kinase| Identical to UPF0085 protein At4g21210 [Arabidopsis Thaliana] (GB:O49562); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01200.1); similar to putative ATP/GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAC45149.1); contains InterPro domain Protein of unknown function DUF299; (InterPro:IPR005177) 0.0714078686122035 0.708389519849051 0.493599848173568 1 -0.362100605763680 22.1117137882862 0.0714078686122035 0.0988932870543652
AT1G65980_at 10.9196466845079 11.1115381212694 11.4270061716429 11.4551286117341 11.3238266368355 11.0775499010891 11.1719648755083 11.1749205454555 10.9968524048616 11.0399576637322 10.9074494572575 10.6414832843327 11.0316109109480 10.9489269210389 10.6922725641768 10.9027492155538 11.0152362069629 10.9067592405800 10.9130413867730 0.0792792520576582 0.0761265289965455 0.0807695153670133 0.081691444317295 0.0765294978542562 0.0806895040311101 0.075267786552349 0.0763766913721648 0.0818072283829682 0.0769468201359483 0.0755610119195622 0.0751842017792711 0.0759232044942795 0.0791215123432589 0.0767419696765022 0.0759380913706005 0.0801985419517348 0.0784129221433623 0.0777071025829235 1 1|0 -|/ 24563189 24564356 24563458 24562969 24564599 - gene protein_coding_gene FALSE TRUE AT1G65980.1|AT1G65980.2 TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1); antioxidant thioredoxin-dependent peroxidase similar to TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65970.1); similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] (GB:AAD33602.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335)|similar to TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65970.1); similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] (GB:AAD33602.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; (InterPro:IPR000866) 0.0619437151454272 0.70830955445313 0.493647553900827 1 -0.362155263630677 22.1397450902863 0.0619437151454272 0.0542504046518777
AT1G03320_at 1.87959898437547 1.25600946804191 1.80870656497248 1.67291307378546 1.23814252609182 1.54536944905982 1.58151327193144 1.69182551162829 1.62084923006155 1.79872031940862 1.58149529165914 1.41956278068835 1.56397505563374 1.60921150738684 1.5975742990638 1.43292763181526 1.70742072983963 1.43939290064103 1.57423619243424 0.204846527842942 0.209127590158266 0.204841637553542 0.210334447907173 0.209069064162631 0.209852337348075 0.205695083482166 0.204375518307967 0.207380368298904 0.208974895450770 0.206161382833142 0.203239800364819 0.203408414504957 0.207248115636178 0.208641726854644 0.20369876696255 0.205526944483707 0.215597563904906 0.210034838564201 1 1 + 817287 817719 817557.273 817027 817767 + gene protein_coding_gene FALSE TRUE AT1G03320.1 unknown protein -0.0783053974470219 -0.708269098318462 0.493671690281576 1 -0.362182914039498 3.18853332551539 -0.0783053974470219 0.124052667430068
AT3G10020_at 9.78242423638535 9.22604716524016 8.99537339645144 8.51710129902086 9.72562972691384 8.82596129569724 7.98619860462812 7.03454032246779 8.39956172672448 8.94525107413818 8.49733645466555 7.75145705988783 7.97841522390146 8.4600374243402 7.31908473035612 7.37025134799782 8.27923391023393 8.349189744975 8.93546334026918 0.140108838994669 0.13369783636726 0.134801689406371 0.135032751183458 0.141991333409447 0.141369421128886 0.130019321345045 0.130925461992783 0.138746735149891 0.12827852996592 0.129409280463477 0.134502124094418 0.146415224888288 0.130401418586953 0.136663218880452 0.150138485236994 0.136648830131193 0.133642036471764 0.132748452056075 3 3 - 3091255 3091623 3091421.909 3091048 3091771 - gene protein_coding_gene FALSE TRUE AT3G10020.1 similar to Os12g0147200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066153.1); similar to Os11g0149200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065754.1) -0.125376231329359 -0.707836935950295 0.493929566069640 1 -0.362478193290366 17.1420183978949 -0.125376231329359 0.259775538080280
AT3G49520_at 1.99626624943505 1.80662571792243 2.12871453765458 2.11438948153853 1.54577664340215 2.12739150543489 1.65521180685100 1.9912091625291 2.34410115477664 2.29753557828226 2.04782138018161 2.34051093865353 2.34308364680956 1.68103381298880 2.01309487855504 1.80506725271077 2.26269914035229 2.07140072211477 2.38413353090523 0.172826624297168 0.180656667122622 0.175571712695479 0.176339228878531 0.175422064511924 0.173256390036387 0.176544226579358 0.179262502149017 0.175347427415157 0.184827254919463 0.175756465771110 0.172370744142426 0.177342954032917 0.180834821440177 0.183092757428267 0.17626075646298 0.187819819858986 0.183861018758974 0.178127343029585 3 3 + 18371136 18371677 18371403.364 18370569 18371735 + gene protein_coding_gene FALSE TRUE AT3G49520.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G49510.1); similar to F-box protein interaction domain [Medicago truncatula] (GB:ABE93710.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0772973209762178 -0.70765428867521 0.494038578361359 1 -0.362602939813648 4.12695433452955 -0.0772973209762178 0.120808865758723
AT3G02540_at 8.47509062295957 8.69160919952794 8.01832654107386 8.33429965881024 8.7663630861745 8.81150238468174 8.60435822053458 8.71765276564196 8.7166124843667 8.63258965203783 9.18778405062434 9.09017630246655 9.17333986347034 9.1423612240008 8.94557006187974 8.9141941620325 8.89400130096268 8.99072497323533 8.97107178060156 0.113992662425778 0.107425235193033 0.117481796806325 0.116151770495169 0.109831375371634 0.115005831698587 0.108526251868072 0.111727696770057 0.113346048136483 0.107425235193033 0.107425235193033 0.109051696482770 0.107620044974153 0.113170106855072 0.111490284054467 0.107425235193033 0.113459999578278 0.107425235193033 0.110900902037754 3 3|0 -|/ 533126 534189 533728.125 532815 536349 - gene protein_coding_gene FALSE TRUE AT3G02540.1|AT3G02540.2 ubiquitin family protein Identical to Putative DNA repair protein RAD23-3 (RAD23-like protein 3) (AtRAD23- 3) (RAD23-3) [Arabidopsis Thaliana] (GB:Q84L31;GB:Q9M887); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT5G38470.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96960.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|Identical to Putative DNA repair protein RAD23-3 (RAD23-like protein 3) (AtRAD23- 3) (RAD23-3) [Arabidopsis Thaliana] (GB:Q84L31;GB:Q9M887); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT5G38470.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96960.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.0646447844255365 0.707649264046699 0.494041577498576 1 -0.362606371179917 17.4602471255936 0.0646447844255365 0.069565502828057
AT4G22340_at 6.05467685680703 6.5652564706664 6.78788354976757 6.59852086334706 6.93482892603282 6.90435833100242 6.57558402846195 7.40409748745815 6.69811588137118 6.25239681953233 6.27199625214273 6.09781685493794 6.61630714565112 6.30213162710554 6.37407114676241 6.93218707212679 6.64660289984288 6.41466183700261 6.32998268720103 0.211899383198442 0.205105384798213 0.211123316818422 0.210848282358187 0.203757358768629 0.210899250334861 0.199179516743379 0.200909947490014 0.219998404082114 0.207588155662132 0.207852959259864 0.211998454728104 0.199754286358645 0.202078406280074 0.206030411341643 0.198442817820763 0.197555046884075 0.205009970746096 0.206550789215865 4 4|0 -|/ 11800193 11801219 11800745.25 11799971 11803457 - gene protein_coding_gene FALSE TRUE AT4G22340.1|AT4G22340.2|AT4G22340.3 phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative|phosphatidate cytidylyltransferase similar to ATCDS1 (CDP-diacylglycerol synthase 1), phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT1G62430.1); similar to Os01g0758400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044302.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); similar to Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) (GB:O04940); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374)|similar to ATCDS1 (CDP-diacylglycerol synthase 1), phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT1G62430.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) 0.0933171325503723 0.70747374352898 0.494146350461927 1 -0.36272622195538 13.1700526394336 0.0933171325503723 0.171657035634163
AT4G13720_at 5.63898409962624 5.35452535732891 4.70000251837547 5.03098225055603 5.56361057622097 5.43746425268634 5.52669002570641 5.78533918625062 5.91399008545216 5.44523215150397 6.22498380996609 6.39381525443076 5.83329152378138 6.32550623775587 6.49938611549612 6.10423818609422 5.1277679196934 6.21890792683476 5.31829558388202 0.215974213859231 0.215647004304927 0.223108248395257 0.214137836153415 0.214167861487438 0.227474914420290 0.219781414627561 0.213627950295941 0.223328371466613 0.22420468022997 0.21640795289864 0.215831885212768 0.210131702177434 0.221985828263708 0.212989101291362 0.221715080678752 0.22462967983288 0.218685838666636 0.216513212166224 4 4|0 -|/ 7967180 7968759 7967894.75 7966948 7968921 - gene protein_coding_gene FALSE TRUE AT4G13720.1 inosine triphosphate pyrophosphatase, putative / HAM1 family protein similar to Os10g0457500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064763.1); similar to putative HAM1 protein [Oryza sativa (japonica cultivar-group)] (GB:AAK54301.1); contains InterPro domain Ham1-like protein; (InterPro:IPR002637) 0.0692223735210894 0.707433235062924 0.494170532994422 1 -0.362753878551304 11.2047796476952 0.0692223735210894 0.0904658284259846
AT1G62740_at 7.75471227871936 7.84386589512796 7.98353048209032 7.75246304903612 7.87261177218251 7.50877470367369 7.88989372627429 7.54159005160714 7.52845388272013 7.49605891832593 7.58990991733128 7.8501713621673 7.54271746892867 7.80529503124937 7.61123995347084 7.66566602186226 7.33318274434615 7.36676819576615 7.4026858947593 0.134413488970161 0.137067659081323 0.140553733639967 0.137054439668297 0.137816044407591 0.146834413052949 0.141926019207940 0.146719971046754 0.140184922205690 0.140374393125724 0.140937184499523 0.137633829099902 0.134639199050899 0.139687255941992 0.135266068240349 0.134938572259589 0.147225303374071 0.138698720045227 0.139864100465307 1 1|0 +|/ 23236071 23237011 23236580.7 23234621 23237208 + gene protein_coding_gene FALSE TRUE AT1G62740.1 stress-inducible protein, putative similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G12270.1); similar to binding [Arabidopsis thaliana] (TAIR:AT4G12400.2); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047563.1); similar to Os04g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053429.1); similar to Heat shock protein STI (Stress-inducible protein) (GmSTI) (GB:Q43468); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) 0.0708577260509733 0.707363886316944 0.494211934125932 1 -0.3628012221217 15.3041061125849 0.0708577260509733 0.0971318364666072
AT2G15640_at 1.58947047083958 1.80434117184505 2.36810137453226 1.93121958667977 1.53351982792307 2.03689432459185 1.72503578175113 2.42034819375097 2.39755400644495 2.49021115626683 2.25024272903405 1.93448622082667 2.03937084043745 2.03441968056503 2.16195146208794 1.82835509075017 2.42938027277861 2.62420789637758 2.40655591076644 0.201905098215525 0.197982081738842 0.198815675166499 0.194551544744663 0.207730315587256 0.194822752595817 0.210570453388211 0.198430628707286 0.205618751735968 0.206773080911756 0.202612647175839 0.200771893531234 0.203651024202720 0.196613523962215 0.195599478304032 0.202845031227357 0.198223866980493 0.193888528218285 0.201625338929049 2 2 - 6823880 6824446 6824119.364 6823874 6825287 - gene protein_coding_gene FALSE TRUE AT2G15640.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G16450.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0930018549169148 -0.707332249724965 0.494230821843701 1 -0.362822818653824 4.22323740745584 -0.0930018549169148 0.170779646128345
AT3G61360_at 2.36551542160699 2.52034079344119 2.74945995157133 2.41261112296876 2.24207659358657 2.37257257803306 2.73589322130286 2.75072205875357 3.05248192870966 2.50199364653992 2.78730673594062 2.55254498194915 2.74796010752344 2.76977343300781 2.84547554551230 3.05891753523720 2.64389902661598 2.58837830286676 2.63242647865756 0.186049894806343 0.196214294669921 0.189199363404972 0.202478270025424 0.191474068734243 0.189804679327492 0.199914352028769 0.197951710309398 0.190005950195450 0.194841417365869 0.191828495238334 0.188935797189488 0.193621252827387 0.186559784354819 0.197569233040984 0.188299116840709 0.194705145638751 0.190840846913107 0.197096099586869 3 3 - 22715612 22716149 22715847.364 22715279 22717113 - gene protein_coding_gene FALSE TRUE AT3G61360.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G02420.1); similar to Os06g0694600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058444.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE78833.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0643116024784726 -0.707230754437866 0.494291419665445 1 -0.362892097906669 5.25777362260006 -0.0643116024784726 0.0680628910862691
AT3G23680_at 1.830975595911 1.81075732892178 1.75881349348142 1.49747489215656 1.5205503155282 1.97750919163300 1.76104200065629 1.89938956128164 1.92424466330473 2.33797105498395 2.06129408921183 1.66952900716677 2.19701856467348 1.95947485558887 1.77676699858326 1.61561160644909 1.99691507630126 2.12040905672595 1.5214855400864 0.214359327561703 0.214187231727259 0.214152515986726 0.219124707987728 0.212382055468929 0.211062068287004 0.216643259236988 0.213831288147419 0.221531786900855 0.213681215567343 0.216990009055900 0.211062068287004 0.215877191896087 0.214829469215703 0.218450022678561 0.211062068287004 0.218673571914263 0.223567170951323 0.211062068287004 3 0|3 /|- 8526377 8526739 8526561.875 8526373 8527180 - gene protein_coding_gene FALSE TRUE AT3G23680.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23685.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0701135805568416 -0.707099148985209 0.494370001540952 1 -0.362981916530362 3.6833279605942 -0.0701135805568416 0.0942565233942565
AT2G19590_at 2.65018006420275 2.76754056341679 2.75736492244272 2.80929318827038 2.12284904629263 2.87601987164764 2.63917712616744 2.70914529104576 3.08748342368625 3.21282703100174 3.18392977715041 3.02751083828143 3.10821885852137 3.06946653780980 2.80857990728866 2.88923027531081 3.15716489548466 3.10481836034585 3.16469685726102 0.211949204207035 0.208540488119011 0.214914951755937 0.213156479633504 0.205340626025128 0.204533035587182 0.206230611860966 0.213274087579853 0.210967931897099 0.209654575374424 0.203507470515389 0.204367517958974 0.209633194003257 0.209577438292755 0.205160441235832 0.201801663414264 0.204671258063052 0.203830411310487 0.204551241135315 2 2 - 8483347 8483837 8483568.727 8483048 8484584 - gene protein_coding_gene FALSE TRUE AT2G19590.1 ACO1 (ACC OXIDASE 1); 1-aminocyclopropane-1-carboxylate oxidase encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase similar to 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G12010.1); similar to ACC oxidase ACCO2 [Manihot esculenta] (GB:AAX84675.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.080758255043528 -0.70703566410498 0.494407911217858 1 -0.363025238537447 5.765754943481 -0.080758255043528 0.132771601350281
AT2G26670_at 9.78282770864156 9.94242191366393 9.87945513922991 9.89810731210778 10.3246114318629 9.71778241920102 10.0876887548375 10.0500335658104 10.1178712184379 9.94308749067214 10.2095396115168 10.1161496309000 10.0996256048804 10.1143709588945 9.90403576747432 10.2817518363633 9.86517525734602 10.0028018494622 9.68674155239627 0.108848278665012 0.107014378510141 0.115765129889159 0.115720944716562 0.108654486043774 0.110575208108131 0.108214173449686 0.112419361604427 0.112594634709297 0.109838334445724 0.109541554220830 0.109975337156416 0.109113472235990 0.109107586961729 0.114478400202157 0.109229729414492 0.122545646980899 0.110720901646477 0.113440209122640 2 2|0 +|/ 11349193 11350448 11349869.111 11348762 11350650 + gene protein_coding_gene FALSE TRUE AT2G26670.1 HY1 (HEME OXYGENASE 1) Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast. similar to HO3 (HEME OXYGENASE 3), heme oxygenase (decyclizing) [Arabidopsis thaliana] (TAIR:AT1G69720.1); similar to heme oxygenase 1 [Lycopersicon esculentum] (GB:AAK63012.1); contains InterPro domain Haem oxygenase; (InterPro:IPR002051) 0.0737636586489852 0.705881822998992 0.495097231118083 1 -0.363812004487196 19.9554067315561 0.0737636586489852 0.108828900299760
AT4G25550_at 8.49846952095134 8.8347612769142 8.97962355896747 8.79181179636763 9.21834425194405 8.82424611188789 9.21558364844856 9.01669842577708 7.55162223364442 8.19792083997014 8.22491420026148 7.9044262372352 8.26581530200067 8.06550885548352 8.64531981526517 7.74717785345277 7.61479127111546 7.9112717329463 8.14843035377487 0.155492155422581 0.158231658859540 0.155344858522466 0.165787352318091 0.154234026837592 0.172573258357968 0.154234026837592 0.158768116021042 0.17857062886329 0.166970906580410 0.155650988686593 0.156321220474028 0.162834310499609 0.165624755090694 0.157138485191775 0.161135072638142 0.1760679232602 0.162280017987369 0.157331316519941 4 4 + 13048621 13050652 13050070.8 13048386 13051178 + gene protein_coding_gene FALSE TRUE AT4G25550.1 similar to ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) [Arabidopsis thaliana] (TAIR:AT4G29820.1); similar to OSJNBa0032F06.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03439.1); similar to Os04g0683100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054301.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047:SF3); contains domain no description (G3D.3.90.79.10); contains domain Nudix (SSF55811) 0.0717701138879479 0.705638974653509 0.495242386638816 1 -0.363977446448964 16.9291394743739 0.0717701138879479 0.101386121327404
AT1G31070_at 2.03408641819103 2.08444721780221 2.12967649562926 1.95989336087520 1.88279846077471 2.10713334847556 2.88841976745778 2.23154584244982 1.50913096453532 1.75502110740219 2.2132072646707 2.00005605101670 2.31462105290684 2.20684152483178 2.79758730859207 1.57044326880303 2.36078420770497 1.95119085160544 1.92924131317198 0.169766955081221 0.164175521761321 0.164749504863412 0.165385067067316 0.167892319587637 0.163543699986424 0.165529225249886 0.173340331373438 0.176377248204716 0.176233730931485 0.165235624883561 0.162309605088972 0.163713002263363 0.162309605088972 0.171862885256791 0.168014167349707 0.171164081481569 0.170241723920386 0.172017577137268 1 1|0 +|/ 11084932 11086269 11085314.556 11084840 11088544 + gene protein_coding_gene FALSE TRUE AT1G31070.1|AT1G31070.2 UDP-N-acetylglucosamine pyrophosphorylase-related similar to UTP--glucose-1-phosphate uridylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G35020.1); similar to putative UDP-N-acetylglucosamine pyrophosphorylase [Medicago sativa] (GB:AAZ32870.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448); contains domain UDP- GLUCOSE PYROPHOSPHORYLASE (PTHR11952); contains domain no description (G3D.3.90.550.10); contains domain UDP-N-ACTEYLGLUCOSAMINE PYROPHOSPHORYLASE 1 (PTHR11952:SF2)|similar to UTP--glucose-1-phosphate uridylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G35020.1); similar to Os08g0206900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061242.1); similar to hypothetical protein MG01320.4 [Magnaporthe grisea 70-15] (GB:XP_363394.1); similar to Os04g0613700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053857.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618) 0.0779804589300447 0.70554896702417 0.495296192673644 1 -0.364038751613561 4.11873639877508 0.0779804589300447 0.123969483487289
AT3G60880_at 5.16527245239148 5.10621080300873 4.87519532531093 5.22896454190244 5.20280509540405 4.751894392466 5.25622755511077 5.11980930155413 5.01228929404258 5.06772712506556 4.57565871069222 5.17860955597587 5.21485878113864 5.03210643458208 5.32222843398934 5.30501720779865 5.28266609485916 4.88278923915112 5.20845658009173 0.216569418531560 0.213713621077338 0.207621213323105 0.217175125264478 0.21039366140547 0.220603162693657 0.214696180757326 0.222395266953601 0.228596110550992 0.208032940631667 0.210263816742157 0.206467298823304 0.209496701134614 0.206027325813847 0.207332841175982 0.206186283376102 0.226574502949591 0.210119693688149 0.209848288179013 3 3 + 22506954 22507488 22507182.091 22505827 22507672 + gene protein_coding_gene FALSE TRUE AT3G60880.1|AT3G60880.2 dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) Identical to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1) (DHDPS1) [Arabidopsis Thaliana] (GB:Q9LZX6;GB:O49355;GB:Q8VZQ1;GB:Q9SW58); similar to DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE), dihydrodipicolinate synthase [Arabidopsis thaliana] (TAIR:AT2G45440.1); similar to dihydrodipicolinate synthase [Populus trichocarpa x Populus deltoides] (GB:CAA51273.2); contains InterPro domain Dihydrodipicolinate synthase subfamily; (InterPro:IPR005263); contains InterPro domain Dihydrodipicolinate synthetase; (InterPro:IPR002220) -0.0720405241859989 -0.705548369800175 0.495296549702574 1 -0.364039158365588 10.1859971702302 -0.0720405241859989 0.102464048548694
AT3G55150_at 1.17870402965796 1.13608201231733 1.16199728141390 0.622017763377709 0.764114160206314 1.02587126238969 0.91550338831332 0.896057342003584 0.885896930837175 1.00869070129929 0.783094973012455 0.640621533655834 0.809124678119576 1.22328732201078 1.01265944598922 1.19125598181053 1.20216793995452 1.13607840096395 1.12537145597898 0.203755671910762 0.208138924250742 0.218756074335027 0.208840152589274 0.202593497055411 0.213207872654652 0.202842850024223 0.200573874965766 0.207085501457153 0.203705329053598 0.201971380110227 0.203805340376496 0.204766632756832 0.221475675731711 0.206769797501022 0.215465630073331 0.212274959096276 0.207040958741270 0.211006476938677 3 3 - 20451632 20452207 20451900 20451527 20453581 - gene protein_coding_gene FALSE TRUE AT3G55150.1 ATEXO70H1 (exocyst subunit EXO70 family protein H1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70H2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN H2), protein binding [Arabidopsis thaliana] (TAIR:AT2G39380.1); similar to Exo70 exocyst complex subunit [Medicago truncatula] (GB:ABE84275.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) -0.0724766605791757 -0.70546847642537 0.495344312505169 1 -0.364093568625881 1.96576306186569 -0.0724766605791757 0.104162441041311
AT1G67620_at 4.28569928267686 4.05239054555096 4.01057718473207 4.13028274768513 2.62253179746707 3.15513435931386 3.81143574032184 4.04475828701974 2.67770382610697 2.76956906427389 3.16211351578351 3.29509735988545 3.42025616537646 3.624171868634 4.0457308786835 2.83721266542167 3.29474542802786 2.78238276937233 2.32464428228973 0.216844877515367 0.224664316860629 0.228380125219714 0.222880797138905 0.216844877515367 0.227465390058929 0.217645180907266 0.218845937572668 0.224108898906872 0.220802064309562 0.216844877515367 0.226274100525156 0.219955157843057 0.2190401158397 0.224108567583833 0.216959635457661 0.224439669602267 0.227561047527557 0.223264606253322 1 1 + 25344248 25344941 25344507.455 25344238 25345745 + gene protein_coding_gene FALSE TRUE AT1G67620.1 similar to AGR_C_5039p, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21940.1); contains InterPro domain Iojap-related protein; (InterPro:IPR004394) 0.074067666124206 0.704756316582784 0.495770188516655 1 -0.364578328419079 6.71327768757342 0.074067666124206 0.110384906778677
AT4G37090_at 4.25915898942554 3.98736163874415 4.33059024009392 3.87797945226444 3.41964995938536 3.82759392309388 4.11327809967688 4.05378898181293 2.89623217951763 3.19666904784414 2.89478014560851 2.93065959468721 3.12726542022474 2.9985646254153 3.22915440079844 3.09171000656481 3.22213434865926 2.83748063975033 2.7666236627833 0.224459338952226 0.228153356834371 0.228915983678039 0.226590442907617 0.230741903750609 0.225758838680305 0.234852463347572 0.224459338952226 0.228485193069350 0.224459338952226 0.228423560303824 0.224459338952226 0.226806115640277 0.236132315807902 0.229460568427840 0.224564702658680 0.224459338952226 0.238978211411401 0.224819283298255 4 4|0 +|/ 17477342 17478472 17478030.7 17477226 17478723 + gene protein_coding_gene FALSE TRUE AT4G37090.1|AT4G37090.2 similar to Os02g0186700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046122.1); similar to villin [Dictyostelium discoideum AX4] (GB:XP_001134479.1) -0.0755749246867947 -0.704563640338468 0.495885448484816 1 -0.364709404885879 6.98099696610977 -0.0755749246867947 0.115919185596650
AT2G27370_at 0.718274386145930 0.932057754677414 0.47907554190183 1.31852858233610 1.14079926345915 1.23335958023865 1.07597819907475 0.783773218050563 0.972699873270757 1.38511702725887 1.26195585704575 1.32060548870514 0.798301051771805 1.71535013377440 1.26943888297606 1.05007055720518 1.19053834380840 1.11560523602184 1.25185534300076 0.209867320205178 0.208861494030381 0.209920045435591 0.212866195578379 0.208844151811126 0.208435090215057 0.218041307864433 0.217695607435751 0.214095642671189 0.205549541852018 0.206894440813665 0.208532643415540 0.225248610262342 0.213492437352917 0.214370846380874 0.214052481748916 0.209820199090792 0.214140738682652 0.207704329353001 2 2 - 11715719 11716880 11716318.727 11715528 11717082 - gene protein_coding_gene FALSE TRUE AT2G27370.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G06200.1); similar to unknown [Striga asiatica] (GB:ABD98039.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) 0.0887144826167726 0.704405105514169 0.495980297125406 1 -0.364817230799345 2.16945945328073 0.0887144826167726 0.159016040511361
AT2G21050_at 1.81231402076790 1.94565494749770 1.34620235780584 1.19215182212115 1.65009676237254 1.83604655270703 2.21167091362843 2.31495951360969 1.96084672345575 1.82220997534024 2.17949416925810 2.66213730510724 1.75953314802849 2.41520222501258 4.36114661314378 1.97108810964863 2.16517808674066 2.03128385145237 2.21766498207307 0.223868953290657 0.230054142201571 0.227532626133216 0.224216966341757 0.221644046524001 0.22227015572855 0.227685309619907 0.222287469439267 0.231568208732315 0.221991689007904 0.223081114430499 0.227420172762979 0.225168251391159 0.234083528171937 0.232474380250678 0.222713027368674 0.221644046524001 0.221644046524001 0.222422138556363 2 2 + 9042952 9043309 9043098.909 9041171 9043717 + gene protein_coding_gene FALSE TRUE AT2G21050.1 amino acid permease, putative Identical to Auxin transporter-like protein 2 (AUX1-like protein 2) (LAX2) [Arabidopsis Thaliana] (GB:Q9S836); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT5G01240.1); similar to AUX1 (AUXIN RESISTANT 1), amino acid permease/ transporter [Arabidopsis thaliana] (TAIR:AT2G38120.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT1G77690.1); similar to Auxin transporter-like protein 5 (AUX1-like protein 5) (MtLAX5) (GB:Q8L883); similar to putative AUX1-like permease [Populus tremula x Populus tremuloides] (GB:AAK58522.1); similar to Auxin transporter-like protein 3 (AUX1-like protein 3) (MtLAX3) (GB:Q9FEL6); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.0610665484324973 -0.7041405279305 0.496138613947382 1 -0.364997131689841 4.01032386073312 -0.0610665484324973 0.0509725248070915
AT2G22350_at 2.18074162591763 2.09726618747908 1.82035435709932 2.25881828022989 1.81059082526149 1.82264777205693 1.60490790882519 2.26901800318917 2.75842152114064 1.68199665698016 1.88542706873200 2.02198869545886 1.94622750779444 2.06356348930402 1.80893776235659 1.81785502521074 2.35363811227655 2.79894090303474 1.98407994327237 0.232672586825204 0.23102946260156 0.235781098717103 0.230622552355153 0.231701133338416 0.236379196919893 0.229611976612533 0.232928333652597 0.236302958319356 0.252465784763835 0.232227443072254 0.229611976612533 0.242359145481050 0.231310733363641 0.231845559816195 0.233855860970857 0.246054822278487 0.242966919163 0.235189263813116 2 2 + 9503595 9504010 9503819.778 9503156 9504121 + gene protein_coding_gene FALSE TRUE AT2G22350.1 RNase H domain-containing protein similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36905.1); similar to Ribonuclease H [Medicago truncatula] (GB:ABD28505.1); contains InterPro domain Ribonuclease H; (InterPro:IPR002156); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.082153837983795 -0.704038794418826 0.496199497018146 1 -0.365066289611756 4.09732896716669 -0.082153837983795 0.138487674347049
AT2G23040_at 1.39958128730591 1.15798834016726 1.64939704209850 1.12753760787204 1.16619618599825 1.06215422068124 1.29450695755465 1.35622375787482 1.68144189788567 2.06930497429802 1.88376326889965 1.40545477226766 1.62584039583032 1.53446171220688 1.52512113993823 1.24208566801793 2.3197902313605 1.51193975543284 1.42026514775425 0.222816572508584 0.219651523350272 0.228491474225909 0.228065850122115 0.219651523350272 0.223119294050692 0.219651523350272 0.224480710967105 0.219651523350272 0.219651523350272 0.226136224765827 0.230880086986484 0.222265596402646 0.224396223669659 0.232105696837248 0.228004515122274 0.239803600042121 0.224682592383735 0.227951230058019 2 2|0 -|/ 9816007 9816265 9816133.5 9814973 9816289 - gene protein_coding_gene FALSE TRUE AT2G23040.1 unknown protein -0.0716836884407732 -0.704001502623724 0.496221815672132 1 -0.365091638115449 2.95406207059753 -0.0716836884407732 0.101696396668940
AT3G07180_at 7.26252179588514 7.50275190815315 6.89000119242145 7.22859370981663 7.66885787910126 7.09255912467605 6.97174925401788 7.08646591705762 7.16223184487824 6.92259804513154 6.75819083013882 7.06490216672474 6.5979902266013 6.97772753385044 6.74998317092055 6.67203837907709 6.25000651692097 6.76324709605933 6.61291040125606 0.183658300642782 0.193633383577395 0.196162218901539 0.191282478886985 0.190155880295179 0.198043264459947 0.180227995785693 0.19170515607613 0.202187210692596 0.184256256365900 0.193040676272256 0.180227995785693 0.184354664375383 0.186370904635377 0.201095024878187 0.188836259037466 0.219695384347769 0.193000983451367 0.189423339933071 3 3|0 -|/ 2282529 2283424 2282990.143 2282239 2285519 - gene protein_coding_gene FALSE TRUE AT3G07180.1|AT3G07180.2 GPI transamidase component PIG-S-related similar to P0497A05.6 [Oryza sativa (japonica cultivar-group)] (GB:BAB92563.1); similar to Os01g0907300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045136.1); contains domain FAMILY NOT NAMED (PTHR21072); contains domain SUBFAMILY NOT NAMED (PTHR21072:SF5) -0.077927632996613 -0.703657136216157 0.496427943399269 1 -0.365325658190147 14.0271913495371 -0.077927632996613 0.124507456878890
AT3G59290_at 4.91460482066195 5.05157260763216 4.62219378504077 4.79964036089334 4.35418770624088 4.02334455031995 4.74303530216013 4.54489087324575 4.38450099206805 4.26623429745918 4.97723591814705 5.21704494126843 4.21586142237731 4.62424959027866 4.66578665602216 4.91797313147412 4.46553249339115 4.34058637674257 4.68734979932898 0.214793921651676 0.208028195289211 0.212364580160054 0.212522691898276 0.210250754192780 0.222761603031197 0.211897463552707 0.216732674585006 0.22817749766342 0.213742858577524 0.209019666999381 0.208196808979068 0.209306755784660 0.211457336364855 0.207351277038631 0.216945802945456 0.221680117830546 0.209670775472781 0.207351277038631 3 0|3 /|+ 21928038 21928370 21928192.4 21922578 21928821 + gene protein_coding_gene FALSE TRUE AT3G59290.1 (EPSIN3); binding similar to epsin N-terminal homology (ENTH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43160.1); similar to Putative epsin [Oryza sativa] (GB:AAK98696.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.0658394235203256 -0.703590361025468 0.496467919127814 1 -0.365371024398762 9.19371484035674 -0.0658394235203256 0.0771920546987277
AT3G12020_at 6.24520259713132 6.3687839878123 5.7222927455583 5.22225082978407 5.85682532794723 5.97688624738051 6.00761705703789 5.66738398580087 6.42637533021294 5.97660438669953 6.60696913347103 6.88003487573581 6.16550831368948 6.33764407263559 6.810069543321 6.31935994684699 5.83778218607895 5.99087673312585 6.01059888162725 0.204938050061335 0.204709015836149 0.222453851663173 0.211368853242567 0.205635829727421 0.221765533672261 0.198440177606776 0.204179732037831 0.228731515092629 0.212307639250936 0.198440177606776 0.206397993178310 0.198440177606776 0.200869798414165 0.206527861566719 0.200361674974132 0.204350989759661 0.20402421291973 0.201294204281294 3 3 + 3833592 3834114 3833831.667 3827022 3834152 + gene protein_coding_gene FALSE TRUE AT3G12020.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G21380.1); similar to kinesin-related protein (MKRP1) [Arabidopsis thaliana] (TAIR:AT1G21730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); similar to kinesin motor protein 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17149.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) -0.0735060257557774 -0.703412904661956 0.496574164934206 1 -0.365491567011766 12.1366004140364 -0.0735060257557774 0.108830257921932
AT2G02040_at 9.6354925238005 9.89222023597942 9.46549209520736 9.8836572992764 10.1147580111345 9.96108363345325 9.5256260894133 9.5236233240983 9.34362919909864 8.97156716229313 9.14779703382817 8.80733594080325 9.19844293551846 9.2857314383771 8.74369635424355 9.02759484714706 8.64476891792173 9.20940514614301 8.93427150069141 0.116139046424169 0.118065778859224 0.118884245959291 0.114662072830808 0.119901235880704 0.120124503676704 0.125019175888075 0.121295672479969 0.120630697913473 0.118386905173209 0.117747674003905 0.117136786834735 0.119390736181919 0.117572838004780 0.124747019591781 0.11495112091994 0.144439975362865 0.11969135727629 0.118598498788672 2 2 + 489141 489645 489358.091 487422 489830 + gene protein_coding_gene FALSE TRUE AT2G02040.1 ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G62200.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT2G02020.1); similar to LeOPT1 [Lycopersicon esculentum] (GB:AAD01600.1); similar to peptide transporter 1 [Vicia faba] (GB:AAP44102.1); similar to amino acid/peptide transporter [Prunus dulcis] (GB:AAF20002.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.0684739195825252 0.703386656262904 0.496589881423384 1 -0.365509394692429 18.7958704169331 0.0684739195825252 0.088982931378726
AT4G24550_at 9.61607058125298 9.67361478855598 9.59753494638273 9.60420013282459 9.91369807740395 9.49797429504756 9.5791569445556 9.38760186789221 9.76187904219691 9.41212713114839 9.80178362566143 9.59893018002283 9.53468376940553 9.5245654496694 9.54908457158395 9.46597028259878 9.59647562230099 9.70770273157309 9.48765024178952 0.0959754353992804 0.0937258078108864 0.103950921178834 0.0962557032977914 0.0927512454328839 0.0944531399075021 0.095893107503013 0.0964978856842914 0.0976544946593867 0.0957437492856602 0.0968760739064168 0.091751359453363 0.0947348833978287 0.0921592592470522 0.0974924140541602 0.0945234986068885 0.102730837011811 0.0966151618167106 0.0952995892343686 4 4|0 +|/ 12677766 12678696 12678308.333 12675744 12679074 + gene protein_coding_gene FALSE TRUE AT4G24550.1|AT4G24550.2 clathrin adaptor complexes medium subunit family protein similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT5G46630.2); similar to Os07g0620300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060299.1); similar to Adaptor complexes medium subunit family protein [Tetrahymena thermophila SB210] (GB:XP_976643.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968)|similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT5G46630.1); similar to Os07g0620300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060299.1); similar to Adaptor complexes medium subunit family protein [Tetrahymena thermophila SB210] (GB:XP_976643.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) 0.0663774373704542 0.703217654454432 0.496691080188949 1 -0.365624164786188 19.1843739546463 0.0663774373704542 0.0798446859508349
AT3G13050_at 5.59511027201494 5.97734678390102 5.61991199420135 5.48069829701082 5.84750153423542 5.46666092533516 5.18835965472376 5.22088942842041 5.22274229606012 4.51904037208255 4.5231953747355 4.62318486447104 4.19424049364995 4.78926185665641 3.98825004579755 4.57535312254079 4.2049301035683 4.7942727510592 4.38953050769464 0.223797837517601 0.221436583888561 0.217996348394019 0.222295126552424 0.217996348394019 0.220764736740698 0.219206980360678 0.221858689306494 0.229951008123967 0.225200980835480 0.224785185804741 0.220619582769200 0.221476611743163 0.217996348394019 0.226441064594406 0.217996348394019 0.232404396861609 0.221039937061448 0.226438803544118 3 3|0 +|/ 4178185 4178835 4178556.8 4176518 4179073 + gene protein_coding_gene FALSE TRUE AT3G13050.1 transporter-related similar to carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G20660.1); similar to Major facilitator superfamily [Medicago truncatula] (GB:ABE91081.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.070292497894304 -0.703053291976659 0.49678951295969 1 -0.365735760303512 10.1355717621498 -0.070292497894304 0.0965984498989863
AT1G65260_at 11.4659682509258 11.5076896184576 11.4373500556657 11.4110817220504 11.7216520503343 11.3964369228688 12.0157979638391 11.8444545410538 11.5774861813307 11.6910316983719 11.7866202921904 11.6547070969910 11.6250715033506 11.7655443885474 11.6732318335052 11.8745087657341 11.5653737753270 11.7115860418109 11.5812795071673 0.0779408006039172 0.0787947284594576 0.083224024675121 0.079584281305672 0.0827005901883832 0.0832019879796202 0.0818343799424544 0.077418571051697 0.0943151737995746 0.0825641809440381 0.0802580194765564 0.0781579515369711 0.0794011994938144 0.0809440916458023 0.078867461171507 0.077418571051697 0.0817350474601621 0.084774947944323 0.0813327927650008 1 1|0 +|/ 24240991 24244014 24242635.444 24239921 24244368 + gene protein_coding_gene FALSE TRUE AT1G65260.1 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) Identical to Probable membrane-associated 30 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O80796); similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30) (GB:Q03943); similar to Os01g0895100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045073.1); contains InterPro domain PspA/IM30; (InterPro:IPR007157) -0.063183036306933 -0.702882674464672 0.496891704288996 1 -0.365851577722258 23.2618936862188 -0.063183036306933 0.0641830202413457
AT2G39530_at 1.95514918303307 1.94496902075979 2.70089467543926 2.15123716721704 1.82994492924035 2.12445604650623 1.96146839536509 2.12789850814078 1.97090074306827 2.2338373020373 1.75720765119469 1.51764691685117 2.10815209715531 2.26854543306217 2.24244012927952 1.75351816230137 2.08035174396074 2.31329527791227 1.97834310706295 0.18457453340887 0.182295824442131 0.186941780393527 0.187710331715490 0.189472642767013 0.184875967505952 0.184451876978419 0.186640635832733 0.188937348297317 0.197740910098793 0.183303276103899 0.184661911988062 0.185431921392258 0.184738603665377 0.187561169572675 0.181592046263446 0.191168139133427 0.191135405307115 0.185157240541879 2 2|0 -|/ 16506092 16506423 16506267.6 16505564 16506549 - gene protein_coding_gene FALSE TRUE AT2G39530.1 integral membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G39518.1); similar to plant integral membrane protein TIGR01569 containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94169.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) 0.0741897767589249 0.702497160203335 0.497122655127128 1 -0.36611317604196 4.13258810430645 0.0741897767589249 0.111705785854190
AT1G12410_at 10.4268937375061 10.4285680956171 10.2894474842389 10.3122742490200 10.5558767502632 10.1804742533883 10.6717153541725 10.5215998692269 10.5492734916536 10.3296647141915 10.5898586515250 10.4683505804376 10.3171035399708 10.4867909540367 10.5542856244881 10.5755807518590 10.3926388777277 10.2046543718824 10.3196584684864 0.0871456631794172 0.0850923780446884 0.0834851213369544 0.0847190153194734 0.0860088653051989 0.089250216178518 0.0842453799156505 0.0906029663443687 0.0906140689748548 0.0857647821142672 0.0870305819739043 0.087290221847157 0.0853281954517725 0.0851437238407854 0.0868069113423 0.0830665927216487 0.0855654793180537 0.0899234012737842 0.0830665927216487 1 0|1 /|+ 4224061 4224915 4224484.333 4223028 4225122 + gene protein_coding_gene FALSE TRUE AT1G12410.1 CLPR2 (Clp protease proteolytic subunit 2); endopeptidase Clp Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to Peptidase S14, ClpP [Medicago truncatula] (GB:ABE87427.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) -0.0642751928446548 -0.702495433823611 0.497123689500023 1 -0.366114347218377 20.8474512960632 -0.0642751928446548 0.0700787116739891
AT1G42580_at 2.21958542145325 2.66210248087718 2.23768438097599 2.56337856827877 2.38958479070998 2.37882730826853 1.99224028779874 2.43340411895111 2.78692674018304 2.77682106787324 2.47151679895029 2.21415941606772 2.56490735987647 2.56861028897358 2.43390687202123 2.48053404285862 2.87220436741195 2.71522919401692 2.71552660430108 0.202751982953971 0.202955487980678 0.217132890125815 0.203913152525793 0.200948205900507 0.20161159078199 0.205986244186293 0.198647777104779 0.220212926046154 0.206334133249025 0.198399618048171 0.196415174349008 0.203057304694657 0.197425259783510 0.201618809209905 0.196415174349008 0.196415174349008 0.206214677277477 0.204872094664325 1 1|0 -|/ 15994136 15994557 15994300.6 15994136 15994615 - gene protein_coding_gene FALSE TRUE AT1G42580.1 similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G47680.1) -0.0770444550710555 -0.702332154978565 0.497221525122998 1 -0.366225103830712 5.00954675965147 -0.0770444550710555 0.121956190477698
AT3G13030_at 3.65003731843364 3.31436937145402 3.17108255204095 2.66926263482078 3.80775135266993 3.26567932554362 3.03696470892269 2.83655234236375 4.00901433631983 3.52339465795399 4.29624186682996 4.34321023300281 3.87467694096763 3.99975443746708 3.84307269361997 3.77990274485634 3.07447218045725 4.01398649540792 3.73108870407508 0.200271968212266 0.196061054999403 0.190903957370480 0.201673836214319 0.193316137787219 0.199746282018448 0.193726230021678 0.1919486484382 0.196253281454414 0.193180170223924 0.191086294916900 0.193072672536101 0.195331699668942 0.203464375803414 0.200939828819281 0.197820394600552 0.196272874214186 0.199566595793834 0.194646250847552 3 3 - 4169769 4170310 4170082.364 4169548 4172058 - gene protein_coding_gene FALSE TRUE AT3G13030.1|AT3G13030.2 hAT dimerisation domain-containing protein|protein dimerization similar to hAT dimerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13020.1); similar to Os03g0822900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051738.1); similar to Os06g0704000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058504.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18451.1); contains InterPro domain HAT dimerisation; (InterPro:IPR008906); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) 0.0838142486342238 0.701970624719481 0.497438193407784 1 -0.366470256856472 7.04779441671072 0.0838142486342238 0.144633058430473
AT3G26160_at 2.53116763489788 2.68730802828697 3.17677587367229 2.55665474897618 2.01973091136147 2.65987336006985 2.22911355410428 2.46295569447938 2.05689450944618 2.43925243668047 2.22728052968148 2.04767726964765 2.38697714468618 2.16875339089383 2.5981373212388 2.41004216686179 2.60763979682866 2.54881603050759 2.46828787545972 0.223844031326912 0.224259451625537 0.223844031326912 0.227418390997036 0.223844031326912 0.226685893216401 0.224425039189721 0.225293320417968 0.229188409739276 0.22611871458136 0.229552033255305 0.223844031326912 0.223844031326912 0.229877698046763 0.2263201832408 0.228575400954071 0.223844031326912 0.227103582498662 0.228507957189030 3 3 - 9569524 9570076 9569790.727 9569517 9571123 - gene protein_coding_gene FALSE TRUE AT3G26160.1 CYP71B17 (cytochrome P450, family 71, subfamily B, polypeptide 17); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B17 (EC 1.14.-.-) (CYP71B17) [Arabidopsis Thaliana] (GB:Q9LTM6); similar to CYP71B16 (cytochrome P450, family 71, subfamily B, polypeptide 16), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26150.1); similar to CYP71B20 (cytochrome P450, family 71, subfamily B, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26180.1); similar to CYP71B19 (cytochrome P450, family 71, subfamily B, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26170.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0892798390044703 0.701851630541397 0.497509520238414 1 -0.366550921559763 4.88839434080872 0.0892798390044703 0.161729238826118
AT1G59560_at 3.96536936930699 4.04271274581587 3.63616076109888 3.77932908725408 3.73478378036979 3.35612777283774 3.58717929608310 3.47181816917594 4.08017105145268 3.88052987991472 4.17813697760491 4.44961240534959 3.68921263434684 4.19436952586098 4.11278494788116 3.85299049713305 3.39581901376746 4.00428957704728 3.96265755911033 0.213867246806782 0.209912137731439 0.221880137126866 0.212225616544138 0.210612306840283 0.214873295152262 0.211815770365594 0.211258592546262 0.215338599605889 0.209912137731439 0.218625463227867 0.212488578007496 0.220007451889262 0.210682741549209 0.221958313417548 0.211296087051798 0.227520091548476 0.212567808118124 0.213300040776778 1 1 + 21886159 21887243 21886657.727 21885264 21887457 + gene protein_coding_gene FALSE TRUE AT1G59560.1 ZCF61; protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63900.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE86663.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0649852137453442 -0.701463107388144 0.497742449960661 1 -0.366814210320311 7.67623751150937 -0.0649852137453442 0.0740641066135641
AT3G20160_at 1.12946896291925 1.41889487923387 1.48508871353090 1.52522647129903 1.36366215276413 1.01952020057455 1.92203518991861 1.79144994429090 1.73345043250181 1.50278062041304 1.59775992740426 1.58849597672618 2.01232049537493 1.39198130732635 1.76263900141332 1.14319735596453 1.75910814049465 2.09311065727164 1.51717400085351 0.214990238878998 0.209624542398879 0.212523565182607 0.216186185431380 0.207437591220651 0.208199379263702 0.211551987060568 0.210273058146488 0.217183957600537 0.212097240012591 0.22320851416553 0.208151533016899 0.212448706763547 0.213413174145793 0.221441994278798 0.211680630250743 0.218947172141811 0.212849763896048 0.207437591220651 3 3 + 7039466 7039977 7039687.909 7039001 7040035 + gene protein_coding_gene FALSE TRUE AT3G20160.1 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative similar to GGPS6 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 6), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT1G49530.1); similar to Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase ; Geranyltranstransferase ; Farnesyltranstransferase ] (GB:Q43133); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.0664898015288192 -0.700956716215785 0.498046144180478 1 -0.367157175693977 3.08344079381796 -0.0664898015288192 0.0813291727727212
AT2G03170_at 1.99689609448857 1.85198002231195 2.00784725938129 1.92554331851665 1.72460747910266 2.16057701551616 1.91795025788755 1.38854457206346 2.52294073894959 2.190760299953 1.95787534361838 1.92618687861856 2.08822457933687 2.12485996294266 2.09337736601461 2.10203346339479 2.09705278318127 2.27504473379069 1.57128470517506 0.203875888690422 0.201764088364090 0.204352841843298 0.206737324067676 0.200348347133589 0.208385115779028 0.204063803505574 0.204976042403395 0.215025350873291 0.209596603499402 0.207265124846825 0.208993828617213 0.202856367245441 0.204643011647341 0.203968788718182 0.200348347133589 0.208772094592846 0.205086151969258 0.204490006995836 2 2 + 961330 961744 961542.727 961319 961768 + gene protein_coding_gene FALSE TRUE AT2G03170.1 ASK14 (ARABIDOPSIS SKP1-LIKE 14); protein binding / ubiquitin-protein ligase similar to ASK15 (ARABIDOPSIS SKP1-LIKE 15), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G25650.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85606.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.0769438361388257 0.700942107016567 0.498054907318971 1 -0.367167066784876 3.96078182085259 0.0769438361388257 0.122137173890894
AT4G16460_at 3.18639122871621 2.9321815594883 3.38474584707213 3.01882677581475 2.39173966084802 3.39601713882693 2.63770556307493 3.07589289859705 2.86999497459671 2.90328620978276 2.92408953441004 2.87504423815958 3.03991243035982 2.82429057455811 3.07451785242528 2.89899070331699 3.44741843996113 2.80427984723899 2.83093887788356 0.164843050792709 0.174753496688539 0.167852411496951 0.170515103660124 0.17100839310558 0.163909930789815 0.168230414250915 0.170797080662590 0.169028878980603 0.167177580120200 0.169344162907098 0.165888620133028 0.177550680261159 0.169357042632590 0.166120796029561 0.167883079821299 0.163909930789815 0.165731549947098 0.173169748105487 4 4 + 9285755 9286087 9285913.273 9285651 9286516 + gene protein_coding_gene FALSE TRUE AT4G16460.1 similar to hypothetical protein MtrDRAFT_AC148526g7v1 [Medicago truncatula] (GB:ABE88232.1) 0.103892070818702 0.70093474097125 0.498059325781178 1 -0.367172053860947 5.9300082373755 0.103892070818702 0.204695265367360
AT2G47430_at 2.21597055892616 1.85096315900993 2.32291754447145 2.08576006499404 2.2404351060532 2.32240818014837 2.19151709472683 2.19389973180981 2.17072390581935 1.97486176251440 1.98279364159169 1.7023445974526 2.17951450142756 1.47332064161353 2.37723603250107 1.84861697685200 2.43926638328692 2.37156850149307 1.99153389784024 0.190070866037743 0.184772959619678 0.189055456693914 0.193309545285996 0.186519688835232 0.188316900159439 0.187408868305973 0.184603013889270 0.188127158025661 0.182560739404216 0.186827654529648 0.195033639786387 0.191259367349494 0.189132283569455 0.191053253410552 0.181893427744515 0.183922523881686 0.193603046713524 0.181893427744515 2 2|0 -|/ 19466296 19466875 19466608.1 19466115 19471157 - gene protein_coding_gene FALSE TRUE AT2G47430.1 CKI1 (CYTOKININ-INDEPENDENT 1); protein histidine kinase/ two-component response regulator Encodes a putative plasma membrane-bound hybrid histidine kinase and cytokinin sensor that is expressed within the female gametophyte. similar to ATHK1 (HISTIDINE KINASE 1) [Arabidopsis thaliana] (TAIR:AT2G17820.1); similar to putative histidine kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD72542.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.0654593626339465 0.700748595517238 0.498170991524659 1 -0.367298065209092 4.22425352081012 0.0654593626339465 0.0766535146079139
AT1G53570_at 7.16760906110458 7.06456986275394 6.98759569362892 7.42453537702735 7.6624824164149 6.27307873768958 6.95735247871088 6.97355439704183 6.52805736137221 6.29926761026522 7.13745602968993 6.11177809143239 7.07600760567641 7.13655346665506 6.14210217101615 6.74615871262151 5.78871988536009 6.28137922829047 6.23997754147888 0.218893098275737 0.210734567819551 0.225318712666498 0.224564941387449 0.213588476943002 0.236462272369164 0.211004723024586 0.219030850679528 0.249659356415485 0.222815866310139 0.207644673620457 0.211386396801629 0.213458186239827 0.229709694424151 0.214782938433678 0.209977243200321 0.229111410656452 0.216631882905687 0.220587153859569 1 1|0 +|/ 19993542 19994358 19993984.6 19990908 19994803 + gene protein_coding_gene FALSE TRUE AT1G53570.1|AT1G53570.2|AT1G53570.3 MAP3KA (Mitogen-activated protein kinase kinase kinase 3); kinase MEK kinase (MAP3Ka) similar to YDA (YODA), kinase [Arabidopsis thaliana] (TAIR:AT1G63700.1); similar to MAP3Ka [Lycopersicon esculentum] (GB:AAS78640.1); similar to MAP3K alpha 1 protein kinase [Brassica napus] (GB:CAA08995.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245)|similar to YDA (YODA), kinase [Arabidopsis thaliana] (TAIR:AT1G63700.1); similar to MAP3Ka [Lycopersicon esculentum] (GB:AAS78640.1); similar to MAP3K alpha 1 protein kinase [Brassica napus] (GB:CAA08995.1); similar to MAP3Ka [Nicotiana benthamiana] (GB:AAS78639.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.121451750379014 0.700733020120734 0.498180335651163 1 -0.367308607612626 13.5179907046539 0.121451750379014 0.252697644136849
AT1G09360_at 1.05175721007502 0.765080545198494 1.40995460481225 0.963423098377104 0.991078634997582 1.57876091357157 0.769387530529397 1.28621417706631 1.24539803898037 1.01440186941972 0.997929376717583 0.785108156372351 1.21957123836825 0.925048108178895 0.953967965000555 0.938385336422196 0.906910013564928 1.37701354928236 1.04375592195317 0.226177405521639 0.224835457285084 0.229554286076009 0.224425841640040 0.224697778498614 0.222360038246334 0.224175960197763 0.225078833838001 0.231172596068952 0.223892887009733 0.224202267930869 0.227171686374400 0.227733168335275 0.224440372558929 0.223946920928544 0.225540402273071 0.225461872799077 0.225319956123194 0.223898909165254 1 1 + 3021804 3022344 3022087.455 3021804 3022370 + gene protein_coding_gene FALSE TRUE AT1G09360.1 invertase/pectin methylesterase inhibitor family protein similar to enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] (TAIR:AT1G09370.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0897504442131467 0.700644268731876 0.498233582184848 1 -0.367368676052799 2.15904558671487 0.0897504442131467 0.163630861595746
AT1G59725_at 1.54473909057464 1.17697370868801 1.20836179956637 1.46845707854739 1.05965188043317 0.95280596489087 0.940461569095198 1.32654355401688 1.33112749628057 1.17671930019120 1.09355003747919 1.24480810669291 1.84794344280865 1.20560126744127 1.40433837685291 0.971953489916383 1.47834233679676 1.36344061858531 0.814247775654236 0.180165085164112 0.183116216993434 0.178267217145424 0.175506811815826 0.184199764096610 0.181432662092129 0.180398665706504 0.180921675584066 0.183698798107754 0.188253212550719 0.180622651787942 0.176185222838346 0.1830427506446 0.194890153716839 0.177428573674548 0.186775946431958 0.181658405494212 0.191362894425588 0.181647065919814 1 1 + 21954806 21955812 21955376.273 21954403 21955875 + gene protein_coding_gene FALSE TRUE AT1G59725.1 DNAJ heat shock protein, putative similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G10350.1); similar to potyviral capsid protein interacting protein 2b [Nicotiana tabacum] (GB:AAQ82703.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.0720110262310519 0.700539149292924 0.498296653230819 1 -0.367439813737119 2.42655536420007 0.0720110262310519 0.104318562693713
AT3G07700_at 9.75901093556816 9.53995781927002 10.4182794436576 10.3630283318940 10.0929170678835 9.81475583946863 10.4702623268955 10.2894446433994 9.85607036118614 9.93134454953366 9.50742985579297 9.13228842807563 9.73362607511684 9.6093590178749 8.89616663475628 9.90946131423599 9.765960938619 9.64435426323353 9.64351526893943 0.0953350129933462 0.100505845035996 0.0996734281411222 0.0997162659740707 0.100192479669725 0.100054475130488 0.0973461717374105 0.0958862162854866 0.101863386514543 0.098001048779636 0.101409272107415 0.0983604913706986 0.100431138118586 0.0993592316477403 0.103363881697325 0.0944743281130262 0.107101636420865 0.102986617558929 0.0965349471481133 3 3|0 -|/ 2459891 2460864 2460392 2459497 2463932 - gene protein_coding_gene FALSE TRUE AT3G07700.1|AT3G07700.2 ABC1 family protein similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.2); similar to Os09g0250700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062679.1); similar to ABC-1 [Crocosphaera watsonii WH 8501] (GB:ZP_00517317.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.0639515022403039 -0.700285014132255 0.498449152881451 1 -0.367611755120347 19.7610274889294 -0.0639515022403039 0.0694606275774448
AT1G50720_at 1.8566015774722 1.53381807099908 1.90835371491013 1.85142124937162 1.49518652092802 1.70817414160045 1.83938507182969 1.75989778990970 2.03410462594162 1.9056473208422 2.32741379956265 1.93096804747242 1.96251873585644 2.18499939130336 1.53393576530003 1.58686504210880 2.22037911557833 2.22797627204927 2.41369569848444 0.191724814922033 0.19418528222546 0.194942058984697 0.198627901190718 0.192045178941542 0.191724814922033 0.198033134438462 0.192335739944904 0.197931383942094 0.198888498686421 0.198282232003965 0.192039976707762 0.198437607762093 0.192117265324415 0.196184993332601 0.207540508591509 0.191724814922033 0.196718506118946 0.191724814922033 1 1 - 18792866 18793265 18793042.909 18792848 18793312 - gene protein_coding_gene FALSE TRUE AT1G50720.1 stigma-specific Stig1 family protein similar to stigma-specific Stig1 family protein [Arabidopsis thaliana] (TAIR:AT4G26880.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81492.1); similar to Os01g0248000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042581.1); contains InterPro domain Stigma-specific protein Stig1; (InterPro:IPR006969) -0.0637877907261444 -0.699413083505087 0.498972590454167 1 -0.368201250922361 3.80145371858261 -0.0637877907261444 0.0690296056776821
AT2G23990_at 1.00376329316960 0.82628304585857 1.43988547020448 0.999533113079257 1.12015571472578 1.59086431465231 1.23222569210338 0.957618045281888 2.05827194401080 1.33222419851587 1.47197024313035 1.31902877376767 1.90434658597163 1.56965486096528 1.28955624883123 1.48375108839351 1.21196169967800 1.83639483081345 1.52452548212162 0.201859404181173 0.197718194851207 0.196510993951317 0.196365792556395 0.197388402444095 0.200682160000927 0.201221473893987 0.196700424941315 0.200481810364705 0.196157743818280 0.197098144798769 0.204485087263225 0.192484409949509 0.194550208467107 0.197114062565553 0.195664368540475 0.206293056331471 0.203914455869104 0.202736482208177 2 2 - 10213922 10214862 10214219.182 10213915 10214991 - gene protein_coding_gene FALSE TRUE AT2G23990.1|AT2G23990.2 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G30590.1); similar to Blue (type 1) copper domain [Medicago truncatula] (GB:ABE93906.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) 0.0775648169782766 0.698892756110494 0.499285112480014 1 -0.368552716893543 2.72087787763107 0.0775648169782766 0.125077391636024
AT1G10120_at 2.52009448240716 2.55618808942563 2.46006933757087 2.31398837427561 2.83993996396833 2.24026992368047 2.75604679664244 2.84163885656876 3.69867221100635 3.18577232685634 4.12621611754723 3.64643136809888 3.35766149303906 3.42328385300024 3.62468807497719 3.25807366578197 2.59898071366787 3.16065336860725 3.13598400954404 0.212569918419962 0.211061936884154 0.205314848853674 0.212600090480664 0.212576310579017 0.210973167658715 0.212019177645154 0.21168278815176 0.211866990456700 0.203358578865747 0.210654036069063 0.203358578865747 0.206149741064623 0.221034444855079 0.216548660741569 0.209295253038718 0.216816696990821 0.215425559030396 0.211388975552712 1 1|0 -|/ 3304351 3305237 3304682.625 3304044 3306826 - gene protein_coding_gene FALSE TRUE AT1G10120.1 DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68920.2); similar to Os03g0728900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051150.1); similar to Os09g0474100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063455.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94800.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.0727847118413976 -0.698596345248554 0.49946319758295 1 -0.368752827641994 5.93585019355518 -0.0727847118413976 0.108013362090920
AT1G05190_at 10.0131187047232 10.0409311623311 9.52271345746578 9.5348487833660 10.3505374857229 9.93742965906596 10.2976241861473 10.0402314349745 9.87163622139895 10.3799575450774 10.3681561885664 10.6726311083473 10.0932280184945 10.1331845165175 10.7177090865482 10.5244844328004 10.1758274727745 10.1688473335298 10.4355822970298 0.0897791447089916 0.0871577435092414 0.0943540220391836 0.0932726858166403 0.0876956814521604 0.0898204981790989 0.0907675551923135 0.0896482837334079 0.0965920826733708 0.0916310481656112 0.0920688065807131 0.0883851943716732 0.0880086086143264 0.0938845646657587 0.0902593337985525 0.0887020052747759 0.0870031210020886 0.0911186356955067 0.0941986439783819 1 1|0 -|/ 1502585 1503195 1502915.6 1502343 1503829 - gene protein_coding_gene FALSE TRUE AT1G05190.1 EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome Identical to 50S ribosomal protein L6, chloroplast precursor (RPL6) [Arabidopsis Thaliana] (GB:O23049); similar to ribosomal protein L6 family protein [Arabidopsis thaliana] (TAIR:AT2G18400.1); similar to Os03g0751400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051292.1); similar to putative ribosomal protein CtrL6e, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAP68351.1); similar to Os03g0356300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050139.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, signature 1; (InterPro:IPR002358) -0.0669470968884516 -0.698564485847896 0.499482341161498 1 -0.368774331743358 20.2600879629909 -0.0669470968884516 0.0843949651216298
AT2G13540_at 7.36481827005655 7.6650744062343 7.42171162726522 7.79779699641022 7.62694783709598 7.45084850759214 7.43982409817986 7.30688008648324 5.95778282217775 6.78304754636708 6.30401636852779 6.77346115683969 6.35299230561175 6.48953824438636 5.7594163402995 6.67259883340159 6.40307482859441 6.45840457608122 6.4431631372033 0.221917795498730 0.218630424356424 0.23126204823272 0.223672513427590 0.220102748480171 0.222999673087447 0.220483556220270 0.221865288977282 0.252116557327702 0.219879452888551 0.224739255386941 0.220037111876536 0.229664260831688 0.234515538622495 0.228167491057943 0.218630424356424 0.2270206935594 0.235354419363904 0.220855996565508 2 2|0 +|/ 5649167 5649870 5649538.889 5643966 5650039 + gene protein_coding_gene FALSE TRUE AT2G13540.1 ABH1 (ABA HYPERSENSITIVE 1) encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signalling. Mutants exhibit hypersensitive response to ABA in germination inhibition. similar to nuclear cap-binding protein CBP80 [Oryza sativa subsp. japonica] (GB:AAG54079.1); similar to Os03g0347200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050097.1); similar to Initiation factor eIF-4 gamma, middle [Medicago truncatula] (GB:ABD32555.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890) 0.0686001783270738 0.69826915072528 0.499659822413635 1 -0.368973631361271 13.9074138954816 0.0686001783270738 0.0916175377445648
AT1G55950_at 1.26321497875063 1.40512634675095 1.12883017187715 1.51512361751136 1.19687927750134 1.59430382956400 1.40223582078440 1.56415762059702 1.57111329578624 1.50861788625308 1.62091083439927 1.14220161525342 1.45729446563075 1.42521899158277 1.29516231191071 1.68555693619376 1.75661342166591 1.89899825023029 1.80474979433943 0.196441599457178 0.192957423464917 0.199655139340801 0.191186678204214 0.195632319834400 0.191743081403087 0.190062832148159 0.191632496825849 0.193757345160877 0.190062832148159 0.197275080668485 0.195346465311486 0.190062832148159 0.194203630916161 0.195820371697366 0.190062832148159 0.193641222147085 0.207763485439884 0.190062832148159 1 1 - 20930581 20931062 20930838.273 20930504 20931115 - gene protein_coding_gene FALSE TRUE AT1G55950.1 similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT2G01370.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) -0.0714075948542552 -0.69826100253175 0.499664719602088 1 -0.368979128884126 2.96543642232608 -0.0714075948542552 0.102894991893042
AT1G26600_at 1.59376065994639 1.67197521773328 1.14991213057536 1.01720076232560 1.38420019660523 1.60268895422151 1.10682261290085 1.00222838509359 1.30791721781680 1.45991086386671 1.06341996959965 1.91703121698107 1.1122624625548 1.12873434826530 1.83769715333650 1.67656958296727 1.43554081810041 1.61546573130551 1.12449714731649 0.187379429261305 0.194336564354181 0.188334077859133 0.200828287012142 0.195687725649915 0.187667840613608 0.186011956083648 0.19467071750819 0.190963113184625 0.188364819772843 0.189278948651868 0.188613614453954 0.188337151519483 0.191163971856977 0.192356447949668 0.186338334563428 0.190881471823686 0.183370628990710 0.185132792703646 1 1 + 9191676 9191980 9191848.545 9191594 9192388 + gene protein_coding_gene FALSE TRUE AT1G26600.1 CLE9 (CLAVATA3/ESR-RELATED 9); receptor binding Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can partially replace CLV3 function in vivo. similar to CLE10 (CLAVATA3/ESR-RELATED 10), receptor binding [Arabidopsis thaliana] (TAIR:AT1G69320.1) 0.0603511047011054 0.698117117220308 0.499751201663377 1 -0.36907619759186 2.70148956661963 0.0603511047011054 0.0496781781373568
AT1G06130_at 6.59653471416441 6.49340977006557 6.13780050429179 6.62472780812571 6.52876948815471 6.38382247847969 6.57203902154748 6.3593986767669 6.46963263835341 6.178195676233 6.23975829317843 6.40332843460853 6.49118140220629 6.507269998685 6.23232836472904 6.8688657507657 6.76612440565557 6.6708584210525 6.24056460676829 0.176535993912627 0.181637812491331 0.182825138937606 0.183290080853109 0.168055115090108 0.180540253846836 0.171796561247687 0.166395855568607 0.180610263295983 0.175009105018850 0.174547498249342 0.170110014028761 0.166395855568607 0.171245619305525 0.175034580947049 0.16871674278546 0.166395855568607 0.172844514269171 0.175692885373249 1 0|1 /|- 1858097 1859415 1858644.1 1857766 1860729 - gene protein_coding_gene FALSE TRUE AT1G06130.1|AT1G06130.2 GLX2-4 (GLYOXALASE 2-4); hydroxyacylglutathione hydrolase similar to GLX2-5 (GLYOXALASE 2-5), hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G31350.1); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|similar to GLX2-5 (GLYOXALASE 2-5), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT2G31350.2); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.0698839671010585 0.69805470184378 0.499788719159925 1 -0.369118298952476 12.8713604865220 0.0698839671010585 0.096965989652135
AT3G04630_at 2.85105249553214 3.08824569876875 1.76816394640115 1.73350347204035 2.22699871399642 2.66677345227343 2.86155592109398 2.52371879143522 2.76937391891746 3.23529990173666 4.60007781523897 5.38479549263122 2.64803381401797 3.84364932419464 5.23972018747018 3.76667308369166 2.60163467279181 3.26868155471171 3.12516721502175 0.204543086582439 0.193064405920495 0.199123994601504 0.200571152246849 0.194919426008954 0.195178618514263 0.195299975906029 0.195994240437772 0.197207277274199 0.195661270795165 0.191910897909645 0.201051980210885 0.194053841062947 0.194094484946207 0.193326328043923 0.201379275348285 0.215060476764635 0.191791587948511 0.19384443064627 3 0|3 /|+ 1260235 1260625 1260462 1258551 1260877 + gene protein_coding_gene FALSE TRUE AT3G04630.1|AT3G04630.2|AT3G04630.3 WDL1 (WVD2-LIKE 1) Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54460.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE83041.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) 0.0717972836692732 0.697870591334026 0.49989939679967 1 -0.369242468041579 5.94622085560208 0.0717972836692732 0.10455104506882
AT1G18170_at 7.2158738129521 7.18520047956923 7.17650360010036 7.19310105288625 7.47051535943923 7.21629108395107 7.51988769576641 7.68704003765894 7.3562337210556 7.68971775209104 7.81257335165354 7.46717451819472 7.77397399772035 7.8173751141085 7.73204195546029 8.09450104085948 7.60214389276357 7.4244322690395 7.32198559680347 0.147150639324629 0.147484440783731 0.157690422848346 0.159478066573367 0.151022548051125 0.175026514492333 0.154834160455990 0.15363556846737 0.163045386942316 0.160889672132401 0.146604330768295 0.149539194394706 0.160289397345927 0.156306187542675 0.153546882572364 0.147908911430627 0.166667089468532 0.160040284072701 0.169096253657256 1 1 + 6254431 6255474 6254987.818 6254222 6255683 + gene protein_coding_gene FALSE TRUE AT1G18170.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT1G73655.1); similar to hypothetical protein MtrDRAFT_AC139526g24v1 [Medicago truncatula] (GB:ABE80155.1); similar to Os03g0708500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051037.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) 0.0608251308829231 0.69777641814019 0.499956014559762 1 -0.369305969486364 14.9188046606863 0.0608251308829231 0.0529971866729618
AT1G66260_at 8.80866222490339 8.84623497614738 9.37271562687556 8.96263188337861 9.44337776414133 8.90531397308421 9.14900496898112 9.00311587262197 9.56973198974855 9.43664304082467 9.6551909529247 9.41228152540067 9.41813463712533 9.68815376313314 9.32582018618976 9.47889253189392 9.12731833380343 9.3944096524984 9.50823776860574 0.0891932542292735 0.0882379383699545 0.0930587035463532 0.0885699425677543 0.0889274779725671 0.0910295211845015 0.0900646480415742 0.0867735893735307 0.0894808504929829 0.0898346856811568 0.0896660666240709 0.0878131619019597 0.0888807998879447 0.0880363137902144 0.0896954854948728 0.0879376202477377 0.095655426602104 0.0859989826769594 0.0880822596361845 1 1|0 -|/ 24699560 24700461 24699878.9 24699303 24702097 - gene protein_coding_gene FALSE TRUE AT1G66260.1 RNA and export factor-binding protein, putative similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G37720.1); similar to ALY protein [Nicotiana benthamiana] (GB:CAJ44458.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0759547830089904 0.697607746773076 0.500057431002204 1 -0.369419685966272 18.5325802267321 0.0759547830089904 0.119942820469941
AT1G26250_at 1.27219771221704 0.936092074341032 0.925678880937146 1.25053032368312 0.977217015641018 1.19750324993278 1.05152183422369 0.942778168014112 1.62087306657429 1.53770445609042 1.30977254809311 0.980753892110808 1.35138932273044 1.34056373223131 1.18592774755504 1.05107014864328 1.74250068507706 1.57639563226873 1.31539489692357 0.244143828958109 0.240721466919428 0.241073654156410 0.240721466919428 0.240721466919428 0.244932493000747 0.241516952646833 0.245983087071387 0.257830138100987 0.245980430265641 0.245270409570558 0.240721466919428 0.257939092465749 0.244088010621976 0.240721466919428 0.245523005092483 0.249351915633639 0.243842910453466 0.244035599942653 1 1 + 9084676 9085158 9084875.125 9083825 9085451 + gene protein_coding_gene FALSE TRUE AT1G26250.1 proline-rich extensin, putative similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G26240.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.068471252962243 -0.697526889035168 0.500106052474119 1 -0.369474190560743 2.47350033409949 -0.068471252962243 0.091383132057929
AT1G58370_at 3.14749182783378 3.35095282220491 2.85761252332359 2.86498892287236 2.71715979730256 3.29290570015766 2.86359586997124 2.85256188339045 3.97716226240714 3.12413928477787 3.57908997107324 3.78627324280279 3.85997754644619 3.77741832504787 3.9756641672874 3.91593669506585 3.72575454716917 4.10760136452238 3.62778524497969 0.178946948994452 0.177414401832877 0.179391535462435 0.180086619831166 0.17626404109328 0.184361064390926 0.174881393590467 0.175076212323977 0.190731565014075 0.181139468486664 0.182963350607279 0.17853123097399 0.175067079100105 0.181130382379436 0.185045348481633 0.178485952578301 0.185082193348029 0.185351801217960 0.178835877274830 1 1 + 21691311 21691829 21691520.455 21688249 21691986 + gene protein_coding_gene FALSE TRUE AT1G58370.1 RXF12; hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein with xylanase activity. similar to glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G10050.1); similar to glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G08160.1); similar to putative xylanase Xyn2 [Nicotiana tabacum] (GB:AAZ79233.1); similar to putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] (GB:AAX33301.1); similar to putative xylanase Xyn1 [Nicotiana tabacum] (GB:AAZ79232.1); contains InterPro domain Carbohydrate-binding, CenC-like; (InterPro:IPR003305); contains InterPro domain Glycoside hydrolase, family 10; (InterPro:IPR001000); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.0720591767179568 0.697499241875127 0.500122677955114 1 -0.369492825645985 6.70207204162295 0.0720591767179568 0.105698847849207
AT4G03600_at 2.51748881448875 2.99711902388784 2.98542176030441 3.15314886789334 4.03542988854956 3.40238228177954 3.50061436611024 3.65726801480728 3.81144375365733 3.37972585419935 3.4655816888646 3.80348994204503 3.45107229572708 3.71857412975816 3.22618796988993 3.22070560543509 2.81003187090997 3.62833631832322 3.23651641832079 0.237301311111067 0.231852423298375 0.242486005117696 0.233966703006945 0.237961387345864 0.229907446823268 0.23342992156361 0.233692510770629 0.238143608044139 0.231771905853517 0.229266116688812 0.235426907156093 0.236527825251323 0.232324434471217 0.228794455973848 0.234387668571834 0.239670505086683 0.241593134992182 0.229470315472663 4 4 - 1603856 1604256 1604102.182 1603700 1604506 - gene protein_coding_gene FALSE TRUE AT4G03600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03730.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA97787.1) 0.0827876401840824 0.697433458740987 0.50016223766001 1 -0.369537162922069 6.72680553706676 0.0827876401840824 0.143067877269616
AT1G50240_at 1.87816675538010 2.05278837669526 2.11554671715592 2.03318293986054 1.85884969995155 2.00088082439215 1.86934724434336 2.14316919206107 1.78916806845936 2.51216093150212 2.15408318296368 2.25397151748588 2.27782056321601 2.35764836721808 2.24872747950858 2.04397697866199 2.01833741754151 2.29555325315182 1.99144809125562 0.168845303766081 0.168305705206256 0.167029379165376 0.171952101930640 0.163573288744267 0.167119195382255 0.164062957919236 0.173320517770212 0.172736439471958 0.166988761408400 0.167005633756511 0.168747855900260 0.166911132836362 0.166080617532417 0.171117220746154 0.164623200619845 0.165703149546049 0.167770076891947 0.168033614783339 1 1|0 +|/ 18611143 18617705 18614915.158 18610715 18617830 + gene protein_coding_gene FALSE TRUE AT1G50240.2 ATP binding / binding / protein kinase/ protein serine/threonine kinase The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED. similar to ATPK19/ATPK2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 19, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT3G08720.2); similar to Protein kinase domain containing protein [Tetrahymena thermophila SB210] (GB:XP_001029696.1); similar to Os12g0433500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066683.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain HEAT; (InterPro:IPR000357) 0.0624598172247529 0.697276462856717 0.500256657228564 1 -0.369642961476283 4.14592007308373 0.0624598172247529 0.0629756839799496
AT3G10525_at 8.79983760381804 9.22577186219983 9.58607217582303 9.9104852101442 9.84213653311974 9.60038082922195 9.95256014982798 10.2782264027010 9.95538523213696 10.0213006074272 9.64102077135585 9.54174628114012 9.887782489674 9.84396288947735 9.08167739973527 9.95671816443554 9.66277244809513 9.33563848691781 9.84133800442346 0.114928850934391 0.118524014176773 0.115233468022911 0.117123382223694 0.113368086113308 0.119904126639877 0.112212677766886 0.112206260037988 0.129800523645804 0.111961306602994 0.118142402314940 0.111961306602994 0.114673195269252 0.117789303004715 0.116803777497605 0.114183687062752 0.122110110623927 0.126464843407859 0.114386521632569 3 3 - 3281585 3281918 3281729.091 3281367 3282037 - gene protein_coding_gene FALSE TRUE AT3G10525.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04470.1) -0.0748783662673906 -0.697242857368127 0.500276869453532 1 -0.369665605196793 19.4285619196985 -0.0748783662673906 0.116239174968370
AT3G62680_at 0.993134899184658 0.247277631241305 0.664662487978686 0.877476129025253 -0.00935504798448277 0.530883802248816 0.854163450317454 0.285988442980390 0.166919564074250 0.545615378587419 0.602726061741356 0.660019246674109 0.493236885259005 0.555737663805463 0.669117585734422 0.627692281898742 0.90762786664156 0.387291359030558 0.297687297430488 0.221331452094869 0.198833650168662 0.200469471704732 0.206589931088301 0.204629179422913 0.201062801743318 0.199620886678212 0.205883757618843 0.201528432139175 0.207140514250991 0.198821027817076 0.202349904328793 0.205380593713656 0.200496129537616 0.205247698212674 0.202432957260050 0.204579291825241 0.205967536013369 0.200196315711506 3 3 + 23194291 23194745 23194590.636 23193698 23194970 + gene protein_coding_gene FALSE TRUE AT3G62680.1 PRP3 (PROLINE-RICH PROTEIN 3); structural constituent of cell wall Proline-rich protein similar to ATPRP1 (PROLINE-RICH PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G54970.1); similar to TrPRP2 [Trifolium repens] (GB:BAA96106.1); contains InterPro domain Extensin-like protein; (InterPro:IPR003883) 0.0984830545184413 0.697144143138488 0.500336244588381 1 -0.36973211411941 1.03036490714678 0.0984830545184413 0.190852978350427
AT3G01015_at 1.11239251724901 1.10170008659075 1.25476190585347 1.22951511557807 0.748050795609371 1.28243926837297 0.689620702661253 1.07583006070735 1.40599409739245 0.987126548922106 0.821827178398837 0.99484482131273 1.37714448138789 0.466496719026240 1.15177545927389 0.736631957074023 1.28571639241003 1.22191010782644 0.583667433925285 0.186892924664305 0.186529338100862 0.193080377950287 0.191887243861444 0.18803472839926 0.195142175821102 0.190942002400245 0.188819050519212 0.196355823217295 0.18782296392891 0.192948213942358 0.199593069119729 0.194982542226066 0.194221189368424 0.191192153064054 0.190083514647151 0.193108993404326 0.207384667792304 0.194996524671657 3 3 - 1817 2954 2317.727 1660 4166 - gene protein_coding_gene FALSE TRUE AT3G01015.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15510.1); similar to EGF-like [Medicago truncatula] (GB:ABE89479.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) 0.0742933128634282 0.697033765864056 0.500402639928207 1 -0.369806470917245 2.0614418480788 0.0742933128634282 0.114200402030772
AT4G25650_at 11.1711654226034 11.0890405327406 11.1911527933941 11.0641165940819 11.1263104475335 11.0283617240400 11.1264960082700 11.0932280548745 11.0485894704477 11.3538628900472 11.3972153898507 11.2899612273110 11.2403901455718 11.2408430019996 11.2358411790944 11.5180208430391 11.2576114954060 11.3129031562971 11.1315887806878 0.0652896148026534 0.0637036583611119 0.0653008412998648 0.063866076394834 0.0669408585058116 0.0665330814871393 0.0691418807573646 0.0631703153739026 0.07798109944975 0.0653354100156939 0.0665861392328151 0.063482766520865 0.0654607399982853 0.0684824351804162 0.0645361269911084 0.064024516722076 0.0676529934879612 0.0714920963343492 0.0659222849284477 4 4|0 -|/ 13081045 13081772 13081346.5 13080910 13083206 - gene protein_coding_gene FALSE TRUE AT4G25650.1|AT4G25650.2 ACD1-LIKE; electron carrier Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. similar to ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) [Arabidopsis thaliana] (TAIR:AT3G44880.1); similar to Rieske [2Fe-2S] re (GB:ABE79300.1); similar to Rieske [2Fe-2S] re (GB:ABE79303.1); similar to Rieske [2Fe-2S] re (GB:ABE79298.1); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) 0.0580437381169543 0.696957832367067 0.500448319372197 1 -0.369857618099054 22.3560399564666 0.0580437381169543 0.0317136081719051
AT2G44910_at 2.26233461769472 2.08790474766461 2.14243238257311 1.97306916133087 1.66878798380297 1.84082365819032 2.11358505404972 1.53197050812936 2.41446889077013 1.61813687556341 2.24228671238321 2.07005253217846 2.11406726194100 1.83035166745551 2.53554073909355 1.89104944139224 1.90412974050977 1.5687916080177 2.19181528920769 0.181952132608127 0.184402837194038 0.195925082540374 0.192599721758046 0.181952132608127 0.190884711633378 0.190075772406148 0.187805535434488 0.187578701433385 0.192000594584003 0.184093910104080 0.192494603634223 0.192834615145507 0.185383485378532 0.196242767239115 0.184093927621654 0.188606307703871 0.207659653063782 0.195639863691680 2 2|0 -|/ 18524985 18526019 18525526 18524962 18526600 - gene protein_coding_gene FALSE TRUE AT2G44910.1 homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 4 Identical to Homeobox-leucine zipper protein ATHB-4 (Homeodomain transcription factor ATHB-4) (HD-ZIP protein ATHB-4) (ATHB-4) [Arabidopsis Thaliana] (GB:P92953;GB:Q546G8); similar to HAT3 (homeobox-leucine zipper protein 3), transcription factor [Arabidopsis thaliana] (TAIR:AT3G60390.1); similar to homeobox protein (GB:AAA56904.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain HD-ZIP protein, N-terminal; (InterPro:IPR006712) -0.0739718705262962 -0.696893758876861 0.500486866137290 1 -0.369900772697329 3.99978387987205 -0.0739718705262962 0.113080521710677
AT1G37010_at 1.32252848796539 1.37431772151886 1.56589151728549 1.65704734675304 1.67345079262109 1.27632352845424 1.84578261520464 1.71114077395418 2.01103331777833 1.71448881840857 1.56171580063700 1.84138788930668 1.83500917788361 1.93629357873434 1.54477627757923 2.0092648607906 1.71338072762574 1.63039239948770 1.87871944482625 0.171478585924916 0.177038980548109 0.167943102527353 0.175197254680293 0.169313948849824 0.170594176188765 0.167943102527353 0.17206781391162 0.172546960740310 0.170242203397534 0.173789290403909 0.172204389236155 0.174151031202161 0.176834895116646 0.167943102527353 0.167943102527353 0.173510629388029 0.177942384068542 0.17843444951257 1 1|0 +|/ 14043361 14043640 14043509.444 14043359 14043668 + gene protein_coding_gene FALSE TRUE AT1G37010.1 similar to SPC98 (SPINDLE POLE BODY COMPONENT 98) [Arabidopsis thaliana] (TAIR:AT5G06680.1) -0.0646585206905371 -0.696303129388534 0.500842274972368 1 -0.370298402130362 3.36686440597461 -0.0646585206905371 0.0748008639683177
AT4G25160_at 0.328785280617446 0.0347039518363902 0.321678244897296 -0.142957123886448 0.104474293783292 0.0703100072890119 -0.0189086767175601 0.250920536415318 -0.0667037465010916 0.113061018640691 0.184596832685401 0.261622231207495 0.450327504954048 0.201710895430418 0.703171638302783 0.585617732909305 -0.0195871771659336 0.493307890309018 0.412653508525098 0.16984829285257 0.179780273603233 0.167882247455204 0.171541094864654 0.167020276983627 0.167020276983627 0.168505274389157 0.167020276983627 0.172262877009619 0.174576861685514 0.168932830301612 0.171851326509446 0.177554078469376 0.170834153939948 0.173305282885882 0.167657749927761 0.172021189195141 0.170146625334022 0.170451576937798 4 4 - 12903390 12903953 12903659.909 12903308 12907348 - gene protein_coding_gene FALSE TRUE AT4G25160.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G61550.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G61560.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51270.1); similar to U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93477.1); similar to Os10g0561500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065387.1); similar to Os06g0140800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056754.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain U box; (InterPro:IPR003613) 0.0720467162535286 0.69619869670296 0.500905132807138 1 -0.370368677480086 0.373925582846326 0.0720467162535286 0.106163762194103
AT1G59800_at 1.03589662185093 1.16406877668501 1.18162869948631 1.62724278720890 0.974530454879743 1.28929825287837 1.05508576219452 1.10443425044101 1.29362467677968 1.08084254429036 1.36209381021892 1.38488787048482 0.867469375209173 0.824845965080193 1.09343474240622 0.840042190008854 1.26225365778867 1.29307654262894 1.08973301704749 0.180447060419739 0.178875712874518 0.179214744178761 0.182999205384288 0.178875712874518 0.179337965980868 0.181378250355043 0.179720980657153 0.186886566158490 0.184282132647993 0.189386587972770 0.182237668767413 0.187023532615933 0.188655210989460 0.183640455768713 0.183762174683874 0.183697100850236 0.18386989199981 0.181458934888203 1 1|0 +|/ 22009086 22009608 22009327 22008629 22009837 + gene protein_coding_gene FALSE TRUE AT1G59800.1 cullin-related similar to cullin-related [Arabidopsis thaliana] (TAIR:AT1G59790.1); similar to cullin 1-like protein C [Petunia inflata] (GB:ABB77428.1); contains InterPro domain Cullin; (InterPro:IPR001373) 0.0697916511714226 0.69615616694124 0.50093073275881 1 -0.370397294070401 2.31439641667013 0.0697916511714226 0.0973598304482848
AT2G03580_at 2.09940695843870 1.61884777151359 2.47357606568533 2.30271606786149 2.20304921078237 2.35278903252574 2.23241946287055 2.02057875827910 2.44891073007499 2.46161496308246 1.72612187993019 1.88318144859257 2.10842272626345 1.97255845988278 2.33984495383547 2.5561937834367 2.57065263285196 2.39216217027955 2.26987338806785 0.233401164533074 0.228226498671139 0.233455997892404 0.233891337370154 0.228071660425958 0.228232344157733 0.218668173105263 0.220907278590036 0.227078629232343 0.240665647446405 0.221215664942994 0.23062830814478 0.234927725342792 0.231284882404037 0.224362217702826 0.223276795951911 0.237989799607656 0.22363438930077 0.242284275788298 2 0|2 /|+ 1093569 1094448 1093978.375 1093261 1094478 + gene protein_coding_gene FALSE TRUE AT2G03580.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G38270.1) 0.0701976264569485 0.696057151552688 0.500990336189642 1 -0.37046391144751 4.45647722464087 0.0701976264569485 0.0990242874158897
AT4G17483_at 1.99239518155296 1.99924039110633 2.25826798122029 2.11127928942025 2.25857005303926 1.89991992477685 2.41205011337872 1.77276148082727 1.96237596883786 2.39266362253445 1.81203118599667 2.03875227639586 2.24653526942691 2.13642726230494 2.0685139657221 1.89925696320059 2.19225509814978 1.70729111473308 2.4175571144379 0.214659728114148 0.218463606612131 0.21649603710666 0.218403198651084 0.210163719753640 0.219990345510676 0.211493417774438 0.216421602675069 0.215985184245777 0.210042903933974 0.209516390815262 0.2114595859666 0.215604374162758 0.211333320846987 0.209852722460928 0.208788710334925 0.214959516042588 0.228190456343788 0.212666528179098 4 4|0 -|/ 9747404 9748339 9747887.375 9747356 9748904 - gene protein_coding_gene FALSE TRUE AT4G17483.1 palmitoyl protein thioesterase family protein similar to palmitoyl protein thioesterase family protein [Arabidopsis thaliana] (TAIR:AT4G17480.1); similar to palmitoyl protein thioesterase family protein [Brassica oleracea] (GB:ABD65142.1); similar to palmitoyl protein thioesterase family protein [Brassica oleracea] (GB:ABD65081.1); contains InterPro domain Palmitoyl protein thioesterase; (InterPro:IPR002472) -0.0785009114404918 -0.696038087330605 0.501001812606342 1 -0.370476736834065 4.22314311554589 -0.0785009114404918 0.129383379661848
AT1G35660_at 2.96339181622870 3.29944885791886 3.41306835940429 3.33809308826521 3.08633625935802 3.42613499651671 2.89697857895213 2.85825899264673 1.97376872054736 1.99448645815495 2.20260570414442 1.865934158009 2.01191926990573 1.81895964813081 1.31298742128747 2.50115975832728 2.47274960310383 2.10771771440137 2.67666794662008 0.174586742744542 0.178910478736972 0.178504291089338 0.179121218318501 0.180548521721647 0.184153194794273 0.175923815204356 0.174586742744542 0.174758066687322 0.180139009960669 0.176002039534027 0.175377021405106 0.182958194277074 0.176502192121938 0.179925851960960 0.174586742744542 0.176977264002348 0.182277709612135 0.176598502726231 1 1 + 13196709 13197215 13196967.636 13192721 13197262 + gene protein_coding_gene FALSE TRUE AT1G35660.1 binding similar to erythroid differentiation-related factor 1 (EDRF1) [Homo sapiens] (GB:CAH73214.1); similar to Os01g0873800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044954.1); similar to PREDICTED: erythroid differentiation-related factor 1 isoform 3 [Pan troglodytes] (GB:XP_001137906.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0665841995028646 0.69574249855815 0.501179773617079 1 -0.370675552285279 5.28607813604693 0.0665841995028646 0.0839837715123675
AT2G16450_at 1.50742441571237 0.848600211150562 1.59968016704901 1.65915980629568 1.41801086591651 1.30216878504020 1.37633749065644 1.48229189109991 1.57341710955211 1.58173410395402 1.10427516926928 1.53165479228659 1.55498131814744 1.58728062701374 1.378979317305 1.47171361776698 1.83607212028029 1.57981042796893 1.4842998142255 0.169201144379865 0.176301537742538 0.176680406497732 0.172930268846309 0.174394277971700 0.170008120825066 0.169201144379865 0.172152132482356 0.174576346714117 0.174553653088775 0.176834430924185 0.169322247245476 0.172288677898070 0.178100091239979 0.184312534268344 0.176709995815523 0.179780886536489 0.181606701476108 0.175002900603390 2 2 - 7138616 7139176 7138878.636 7138602 7139885 - gene protein_coding_gene FALSE TRUE AT2G16450.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G15640.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0751018258823856 0.695659483701284 0.50122976009688 1 -0.370731374966524 2.92524900394775 0.0751018258823856 0.117655904445926
AT1G78700_at 4.668608206789 4.5431464837448 3.84547195192250 4.46308832204428 4.68560855469833 4.63728044456486 4.53238279545789 4.90219874291976 4.87364780181876 4.84328267843739 5.02284505313697 4.93640485712243 5.56485703095386 5.24761672727489 5.14568950639969 4.76253465020285 4.53212347927356 4.80492392009427 4.99424429482522 0.242106111999671 0.242674460346913 0.245821267940507 0.252126336615816 0.240294051033775 0.242580628414959 0.240003586451915 0.244167200120301 0.239529947746798 0.25251362934174 0.248586471407089 0.240582605522839 0.235920897342073 0.241451379016028 0.242285087961479 0.237240190464887 0.241908849879964 0.250359123042353 0.246419297013282 1 1 + 29605849 29606304 29606070.091 29604242 29606575 + gene protein_coding_gene FALSE TRUE AT1G78700.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 4 (BEH4) [Arabidopsis Thaliana] (GB:Q9ZV88); similar to brassinosteroid signalling positive regulator-related [Arabidopsis thaliana] (TAIR:AT4G18890.1); similar to Os01g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042330.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB33003.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) -0.0776611304450846 -0.695452344985768 0.501354499547715 1 -0.370870637364079 9.4876478518099 -0.0776611304450846 0.126731094054589
AT3G15930_at 1.33844702912125 1.22776559195609 1.4625749087513 1.04561463133315 1.04603030332874 1.13652954440162 1.15717200534507 1.03411247202789 1.20978386717544 1.89432102165772 1.25421438585980 1.32205159306823 1.07829810139830 1.21539772509746 1.31327368291327 1.02333338120288 1.61577733016808 1.33196909593152 1.04657731582996 0.190323245749457 0.189641521896629 0.189641521896629 0.195691358525787 0.189641521896629 0.191130365943063 0.197023605843029 0.189947826010721 0.189641521896629 0.189641521896629 0.193457754063444 0.203614372049728 0.200510029986697 0.195023058163724 0.198254802586961 0.194339478138576 0.192034754858016 0.203312491292496 0.202919408140036 3 3|0 +|/ 5389059 5389643 5389340.8 5387450 5389696 + gene protein_coding_gene FALSE TRUE AT3G15930.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE83029.1); similar to Asp/Glu racemase; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE77900.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0654791252958172 -0.695177766460608 0.501519880377607 1 -0.371055182460235 2.50745588420446 -0.0654791252958172 0.079197803703578
AT3G21720_at 2.56268753759003 2.02511379743522 2.22166092970581 2.09848225477387 1.94974538756793 2.51131103432332 1.94431531190523 1.38945602431349 1.78586144784475 2.43565377582103 2.0802104625643 1.54638224691298 2.57535393105815 1.75950893497491 1.91065419222637 1.77453800153906 2.41137415179423 1.9690559175995 1.89321391919129 0.217352749082482 0.217352749082482 0.232331853243118 0.221807000900239 0.223160687650718 0.223889607850186 0.217352749082482 0.221466422381915 0.217795068897263 0.226192158303076 0.230269393389965 0.217352749082482 0.223311446934115 0.225425118214552 0.223509361527694 0.222328033021573 0.226975294233172 0.224739935130015 0.220661671954369 3 3 - 7652803 7653651 7653431 7652494 7656018 - gene protein_coding_gene FALSE TRUE AT3G21720.1 isocitrate lyase, putative Identical to Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (Isocitratase) (ICL) (ICL) [Arabidopsis Thaliana] (GB:P28297;GB:Q41948;GB:Q9LSZ2); similar to mutase family protein [Arabidopsis thaliana] (TAIR:AT1G77060.1); similar to Isocitrate lyase (Isocitrase) (Isocitratase) (ICL) (GB:P17069); similar to Isocitrate lyase (Isocitrase) (Isocitratase) (ICL) (GB:P25248); similar to glyoxysomal isocitrate lyase [Brassica napus] (GB:CAA73792.1); contains InterPro domain Isocitrate lyase; (InterPro:IPR006254); contains InterPro domain Isocitrate lyase and phosphorylmutase; (InterPro:IPR000918) 0.0900242079982022 0.69505320698282 0.501594914424986 1 -0.371138877449055 4.10866042342822 0.0900242079982022 0.166652927627232
AT2G19320_at 2.13057867220923 2.15508639542141 2.04654911041456 2.03419161477661 1.39245434192590 1.99586719244567 1.75477272269134 1.88500026749556 2.10456909373097 1.84508862041919 1.54842521743342 1.87868266201706 1.75622089922008 1.99424188796523 1.75152580592006 1.46902237937494 2.04336228352433 1.90382273883624 1.52024432519796 0.215929109264171 0.210586671745290 0.212129815326252 0.205741773548727 0.206592645434486 0.216121221723253 0.205361882992850 0.204447695685699 0.204447695685699 0.210007824773843 0.206161636601312 0.205990922306445 0.209016028378118 0.210195152781966 0.208925978756602 0.207356438676213 0.208077997536 0.216207684256439 0.21729048030219 2 2 - 8377948 8378117 8378032.364 8377773 8378190 - gene protein_coding_gene FALSE TRUE AT2G19320.1 unknown protein -0.0721158225299933 -0.694913729609945 0.501678943003383 1 -0.371232580015772 3.7325443717071 -0.0721158225299933 0.106933166489083
AT1G33390_at 3.43657207223802 3.65490938921648 3.77023598727808 3.58255041054948 3.47605042924263 3.29765269655537 3.10098143175614 2.31933539486606 2.86047576023294 2.82991913228676 2.55501630735969 2.57980954099694 2.54044671654376 2.42321132011635 2.54539918547745 2.79806386955993 2.86701496283331 2.8101720482756 2.93755477859304 0.223366230935214 0.220335824745483 0.232460574631515 0.23323018794765 0.225970595650982 0.230969823549743 0.225813361203720 0.224154552973881 0.233827530991498 0.222827983096994 0.223588264580204 0.222366150941132 0.221172152350782 0.224661426469616 0.227804898427344 0.220335824745483 0.223694111326282 0.237419615383851 0.224948440665485 1 1 - 12099951 12100283 12100121.818 12099462 12104088 - gene protein_coding_gene FALSE TRUE AT1G33390.1 helicase domain-containing protein similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48650.1); similar to Os02g0736600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048055.1); similar to hypothetical protein DDBDRAFT_0187437 [Dictyostelium discoideum AX4] (GB:XP_637255.1); similar to ATP-dependent helicase HrpA [Medicago truncatula] (GB:ABE92385.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0837906645391757 0.694519468255758 0.501916513039618 1 -0.371497357090878 6.0877234602626 0.0837906645391757 0.147421177594438
AT4G37710_at 1.03156967590752 1.08893863932629 0.751796075685147 1.39595626849431 1.14674451955703 0.936628570013779 1.19215178679927 0.837339153542183 1.44215289240423 1.46441974884922 0.868895132970235 1.01213441437053 1.24519904434872 1.19574001268015 1.41685575874395 0.877818104973563 1.50999650642516 1.32380741217156 1.1740834538149 0.200958850971802 0.202668178106212 0.200790025126891 0.201342301984226 0.198604217609957 0.202529027353407 0.198704257067957 0.206374831334670 0.200761396280779 0.196043563508044 0.203139728914406 0.200671464576222 0.198336845735825 0.194155969371554 0.201613753406855 0.201676561640811 0.20333966049553 0.201314505629368 0.199796197847321 4 4 + 17718254 17718513 17718394.273 17718122 17718736 + gene protein_coding_gene FALSE TRUE AT4G37710.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G22880.1); contains InterPro domain VQ; (InterPro:IPR008889) -0.0793156777384446 -0.69451074559002 0.501921769824895 1 -0.371503213493529 2.31840283451149 -0.0793156777384446 0.132731265281428
AT3G10150_at 1.58242738499086 1.8214372727309 3.42423250975318 3.31964773930099 2.67902542690103 2.77238589588967 4.50418796904211 4.21083082247664 2.23605466879632 2.98642136824351 2.78590613581952 2.0839935726273 3.41593731816294 3.04789320572957 2.51964037521110 3.97901050548226 4.19992841205062 1.67194973495873 3.34296244467349 0.243005141748624 0.235722862712386 0.236207993116293 0.235722862712386 0.236662936077375 0.236265930473693 0.242524456865762 0.250223925520934 0.236377521500339 0.235722862712386 0.242730696452192 0.241713898677065 0.235722862712386 0.240486881754719 0.241875588083060 0.237376216760097 0.248244449742639 0.253250293064388 0.237390604517092 3 3|0 -|/ 3137560 3138252 3138005.5 3137367 3139061 - gene protein_coding_gene FALSE TRUE AT3G10150.1 ATPAP16/PAP16 (purple acid phosphatase 16); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP28/PAP28 (purple acid phosphatase 28), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G57140.1); similar to Os01g0941800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045361.1); similar to hypothetical protein DDBDRAFT_0205355 [Dictyostelium discoideum AX4] (GB:XP_642271.1); contains InterPro domain Phosphoesterase At2g46880; (InterPro:IPR011230); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0634941387926204 0.694483004663517 0.501938488340657 1 -0.371521838322787 5.94836116167385 0.0634941387926204 0.0698331413918815
AT1G23790_at 0.501604717615294 0.700016819286719 0.66230203745022 0.70513521677264 0.490585025194114 0.615371337503458 0.483386103279603 0.550034902044125 0.508354995201779 1.04506433495564 0.743758849546453 1.06554515000433 0.794048293936471 0.827951139063553 1.18522245023809 1.19924901588829 0.821498596703994 0.980452628072376 1.12744376224987 0.212804787771949 0.216353483703969 0.213345560539581 0.216128380751244 0.208832094365283 0.212170798707640 0.216527104558556 0.217102953685110 0.224220840222254 0.21653743625335 0.212087627377317 0.208832094365283 0.212708908137773 0.209788203151035 0.210124324771116 0.208832094365283 0.214719816820396 0.210803699698015 0.211747263224229 1 0|1 /|+ 8411372 8411841 8411596.8 8409952 8412030 + gene protein_coding_gene FALSE TRUE AT1G23790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70340.1); similar to Os03g0181800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049172.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44860.1); similar to Os01g0108800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041791.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF936, plant; (InterPro:IPR010341) 0.0590912516514698 0.69446939312499 0.501946691676546 1 -0.371530976652126 1.51147291801033 0.0590912516514698 0.0428168607498164
AT1G07910_at 4.7285588711093 4.30818338626819 4.93131356913726 4.69556147803392 4.65294306756654 4.86945260629608 4.1785454135895 4.32075628636005 4.8479959968047 4.16409730516973 4.09601062521669 4.03946447991516 3.42444912936393 3.76881623566422 3.55870588925573 4.03032423122261 4.00607123440607 3.75872757076272 4.11753013738389 0.212959333236068 0.211237373615081 0.211144786559729 0.212212492826517 0.212768531179899 0.220290773561026 0.219231626484475 0.211303851288439 0.209029853719281 0.214487430682127 0.231103158546094 0.211149406176145 0.210640262383873 0.211040017123054 0.220401734091594 0.209004278454392 0.218259418127886 0.20992726837505 0.209493056202911 1 0|1 /|+ 2454049 2454352 2454191.9 2445467 2454642 + gene protein_coding_gene FALSE TRUE AT1G07910.1 ATRNL/RNL (ARABIDOPSIS THALIANA RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains ? an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component? that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo. similar to RNA ligase isoform 2 [Triticum aestivum] (GB:BAF02599.1); similar to RNA ligase isoform 3 [Triticum aestivum] (GB:BAF02600.1); similar to RNA ligase isoform 1 [Triticum aestivum] (GB:BAF02598.1); contains domain no description (G3D.3.40.50.300); contains domain no description (G3D.1.20.1050.10); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.0689566405250963 -0.694368232621668 0.502007661137433 1 -0.37159888731318 8.69159549525944 -0.0689566405250963 0.094690304664395
AT1G16220_at 1.01187896471993 1.62182831511731 1.42666802108676 1.15142346632529 1.14279185722228 1.13960596559101 1.13169897331703 1.31866608003645 1.72562959733288 1.35821447394011 1.2647834881842 1.53916029141833 1.46868568749336 1.41240991984969 1.38398945945212 1.27310290347340 0.921546128792215 0.994199581709598 1.04923602560910 0.213743388920819 0.215577675724917 0.215409979638638 0.211053727820311 0.215350217414297 0.217190405549085 0.212902804525723 0.210338888100593 0.222621802439184 0.210338888100593 0.220840455053683 0.214170746038407 0.218581569868747 0.226230357488466 0.223207334314334 0.218913761920105 0.219616722782951 0.223072439518544 0.215608941115066 1 1 + 5549887 5550495 5550151 5548647 5550547 + gene protein_coding_gene FALSE TRUE AT1G16220.1 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT1G79630.1); similar to Os08g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062155.1); similar to protein phosphatase 2c [Medicago sativa] (GB:AAV73837.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.0756772194110469 -0.694289041735795 0.502055392629178 1 -0.371652043145736 2.57303422951400 -0.0756772194110469 0.120240570214339
AT3G15970_at 5.68344743031642 6.2305302323696 6.19189666652167 5.83511817453462 5.94451716475146 6.30490099933204 5.4410700467434 5.86990183166909 5.75604104532749 5.62820055724872 5.03691925167779 4.85494801848843 5.41581042149941 5.55990496458467 5.60404603954598 5.50410011820211 5.56808047164503 4.84867542750898 5.80683759757222 0.165203194860427 0.177191757394032 0.169280686627143 0.180137613047992 0.183286814589401 0.176157882461487 0.177421274485379 0.167326446111537 0.181533246531096 0.169720162620077 0.176191583732217 0.167384923564425 0.178012097036095 0.168666080601724 0.171642968835469 0.165048250856841 0.168946955195484 0.176382162596397 0.174866068690292 3 3 - 5409000 5409548 5409360 5408803 5411149 - gene protein_coding_gene FALSE TRUE AT3G15970.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein similar to Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52380.1); similar to hypothetical protein DEHA0F08767g [Debaryomyces hansenii CBS767] (GB:XP_460702.1); similar to hypothetical protein DDBDRAFT_0205337 [Dictyostelium discoideum AX4] (GB:XP_642253.1); similar to Os05g0349500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055271.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.0842141391142204 -0.694188767170033 0.502115836029207 1 -0.371719343213915 11.4523829795432 -0.0842141391142204 0.148903828594507
AT3G60760_at 1.33194914620618 1.32017302801514 1.47622861423566 1.66836376798780 1.52231596386159 1.40682811613544 1.72062340844947 1.22865364605519 1.52599907408300 1.1439385964928 1.28959087971748 1.34095893487604 1.38016796248816 1.37815547803347 1.99366134005915 1.47377312755923 1.84319750182340 1.67007200256402 1.91089737323489 0.223199891386320 0.213810703432328 0.219096938241060 0.215396225743390 0.215600901581484 0.231105009825888 0.211035024787153 0.214706541141115 0.218386096872224 0.224596907644929 0.220691042000537 0.217192930015645 0.224380524461428 0.226243688374524 0.22137923640664 0.221256912149241 0.213253233781795 0.214573852556861 0.231290900063626 3 3|0 -|/ 22469593 22470140 22469843.9 22469591 22470177 - gene protein_coding_gene FALSE TRUE AT3G60760.1 unknown protein 0.0686682235800917 0.694169243827676 0.50212760480119 1 -0.371732445432182 2.99596304536515 0.0686682235800917 0.0935818251309931
AT2G02300_at 0.855648654276659 0.708339380369792 0.824638154346202 1.24273192618584 0.873771267330041 1.14610845513734 0.851883204869474 1.07408827098583 1.54891601630755 1.49282423903077 0.977640122807618 1.01060189791233 0.85591536140334 1.20821682921418 1.44233221300032 1.06492838935690 1.23250681772219 1.80552403256931 1.42349912055316 0.177814470448091 0.177399828684706 0.184049001902292 0.176797808999033 0.178457008673769 0.174010555533601 0.17483588146379 0.175341742732823 0.174010555533601 0.179443020345704 0.174010555533601 0.182042766354733 0.179584245872382 0.178248273853072 0.180825256321039 0.174010555533601 0.174010555533601 0.17406485850791 0.179758029107531 2 2|0 -|/ 606614 607540 606964.5 606181 607838 - gene protein_coding_gene FALSE TRUE AT2G02300.1 ATPP2-B5 (Phloem protein 2-B5) similar to ATPP2-B6 (Phloem protein 2-B6) [Arabidopsis thaliana] (TAIR:AT2G02310.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.0696911720872351 -0.693813460455133 0.502342102072 1 -0.371971154873881 2.29121183083536 -0.0696911720872351 0.0979013931029746
AT3G15550_at 1.15523443134513 1.59159143336119 1.41984653813705 1.03592603168355 1.38447921716378 1.02886091393572 1.3519869335019 1.30967936003092 0.966442606534581 1.70143119596085 1.16806471589441 1.71657467229925 1.41996026346276 1.76667487388469 1.39341731411482 0.972936166306872 1.91997004440922 1.63990017229368 1.87687341178203 0.192147718892088 0.193306639869475 0.198160223099634 0.195176705230077 0.194278879141124 0.193770127120471 0.194397654775334 0.190777169173825 0.203778882200803 0.19284125640671 0.19204337544797 0.198124415153531 0.191367725462508 0.198106963723507 0.197042717486434 0.195121480747786 0.201012798895922 0.196665904164676 0.196889542469104 3 3 + 5267408 5268193 5267750.818 5267358 5268228 + gene protein_coding_gene FALSE TRUE AT3G15550.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58844.1); similar to Os01g0176500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042182.1); contains domain His-Me finger endonucleases (SSF54060) -0.0750366622945187 -0.693804017072776 0.502347796121544 1 -0.37197748930545 2.79200211535775 -0.0750366622945187 0.118141555428812
AT4G00870_at 1.38126489625093 0.743452860348104 0.881639653920973 1.28091844288064 1.24331710735766 1.21641081619224 1.09611775364554 0.932400767780284 0.97255421881027 1.38782354887574 1.41872295445267 1.1121268884401 0.908074670867468 1.24352107129444 0.901612739219395 1.06602500946319 1.37075587900959 1.31593963989131 1.01620419368600 0.224161285501964 0.214403069241730 0.216472360592822 0.220086376882355 0.21873311637128 0.218097120845320 0.218378227352261 0.215660536027516 0.235597738924091 0.217719151606925 0.216973741576131 0.214403069241730 0.217666200593486 0.215537975985031 0.215095546496237 0.217445133059139 0.215565597093698 0.239907084315964 0.220603214032773 4 4 - 362240 362781 362548.091 362169 363691 - gene protein_coding_gene FALSE TRUE AT4G00870.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G16430.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0794162358520487 0.693788302848598 0.502357271369305 1 -0.371988029918303 2.2432526258156 0.0794162358520487 0.133348129330456
AT1G24620_at 1.68310074488373 1.62817672115571 1.92024314037061 1.90313956693084 1.65168185812688 1.91215351185865 1.67878944268169 1.79692920893314 1.68396539872303 1.74760028990392 1.59542755856860 1.36667861009960 1.77227894652588 1.43315457252275 1.55064574704458 1.75318971823418 2.13418269323255 1.61691291002862 1.61645371952092 0.184340247705682 0.181411116964432 0.175961234217850 0.180104000051529 0.178164974301445 0.175961234217850 0.187308401371072 0.182386166741434 0.179711269945711 0.180200810564279 0.180975656356718 0.180505675405983 0.184942618091421 0.178719877930085 0.180897804831049 0.177552345301869 0.186492656038747 0.178622818048602 0.180890778454629 1 1 - 8723880 8724402 8724184.091 8723698 8724445 - gene protein_coding_gene FALSE TRUE AT1G24620.1 polcalcin, putative / calcium-binding pollen allergen, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to calcium-binding pollen allergen [Arachis hypogaea] (GB:AAZ20284.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.0600955991954928 0.693780847521591 0.502361766765541 1 -0.371993030643899 3.43951776465835 0.0600955991954928 0.0504868014623173
AT1G07680_at 1.18039555099729 1.60217848374242 1.99773387012182 1.33665463637308 1.60707838010357 1.27024947188038 1.33326484727073 1.51099980153927 1.59905458114671 1.79228853864680 1.30613272630054 1.10420852633268 1.26020861741902 1.02716061069731 1.52225838379654 1.58015692163290 1.50145179502952 1.73498038841423 1.69459740277138 0.225183864258103 0.225183864258103 0.233895130891837 0.249612541179627 0.225183864258103 0.231430820758664 0.233911111903966 0.229355825340791 0.238587239138027 0.228693918157315 0.232638658172319 0.24420524409468 0.230097354816352 0.237215674504159 0.237031823780199 0.227076412301564 0.225183864258103 0.23766147031986 0.232336151900613 1 1 + 2376083 2376933 2376468.8 2376009 2377183 + gene protein_coding_gene FALSE TRUE AT1G07680.1 unknown protein -0.084762171293252 -0.693638076390487 0.502447859270527 1 -0.372088786201351 3.01726100711581 -0.084762171293252 0.150862582898955
AT1G12050_at 8.79169526204583 9.05786878904175 8.84843479572201 9.1668312552096 9.28073611594452 8.9213152786982 8.82049813050613 9.11838915614345 8.58775965468219 8.69460776934264 8.65173341344314 8.22778851030168 8.79080749481446 8.64473460348377 8.23699166569797 8.86498904996961 8.6525950736574 8.76281918350589 8.41773944669243 0.152054920898057 0.147806798203986 0.154974105132450 0.151563730970587 0.147705880526214 0.148207744546683 0.147592360258513 0.151203913689757 0.162695959663403 0.149641518710593 0.150051039101055 0.148351705802751 0.143638712185034 0.151652432270524 0.150498750871761 0.143638712185034 0.144874414252164 0.149411750559866 0.151494946002932 1 1|0 +|/ 4074739 4075621 4075267.7 4072750 4076205 + gene protein_coding_gene FALSE TRUE AT1G12050.1 fumarylacetoacetase, putative similar to fumarylacetoacetase [Medicago truncatula] (GB:ABD33010.1); similar to Os02g0196800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046195.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (InterPro:IPR002529); contains InterPro domain Fumarylacetoacetase; (InterPro:IPR005959) 0.072285805539726 0.693605744737433 0.502467356838086 1 -0.372110468318002 17.5861009302131 0.072285805539726 0.108092975903468
AT2G33220_at 9.24146039476788 9.36425924734432 9.33820760787718 9.31319285973657 9.36209084976525 9.20408113087167 9.40153675885382 9.61797572770833 9.2993830399486 9.30571428391102 9.65007955132953 9.57586313872665 9.44502051515395 9.58392926183456 9.47857848474356 9.5600524711632 9.23619088148247 9.43243294735389 9.21392073435016 0.119732527780951 0.115944914258811 0.119615670542320 0.110274084070912 0.112950212663979 0.116911933063415 0.117886937094915 0.114837530805124 0.115785937900727 0.116542781734166 0.118596166693754 0.110274084070912 0.111410145108022 0.119072445329461 0.11449652672864 0.112147457548035 0.120085335810966 0.113700448968451 0.114064631392351 2 2 + 14086113 14086950 14086466.455 14085928 14087234 + gene protein_coding_gene FALSE TRUE AT2G33220.1 similar to MEE4 (maternal effect embryo arrest 4) [Arabidopsis thaliana] (TAIR:AT1G04630.1); similar to F6 [Gossypium hirsutum] (GB:CAC84110.1); contains InterPro domain GRIM-19; (InterPro:IPR009346) 0.0601737334821475 0.693459639920435 0.502555470887417 1 -0.372208437058080 18.739487785054 0.0601737334821475 0.0511955817466731
AT2G21630_at 3.33860714793353 3.58179554975614 2.85211124526367 3.3206953598133 4.05331431818002 2.98734835488468 3.27638584279841 3.31537651782002 3.64665997123678 3.9040914322955 3.98400914934739 3.5040269771318 3.46112254265419 3.25092921571697 2.93694865907714 3.56018007192184 3.25905969593919 4.20655469235849 3.40562491002992 0.254346595777995 0.247355744358142 0.244230478632612 0.246120260935780 0.249695643881136 0.247768091125903 0.247413744039278 0.252797713443403 0.265104253383757 0.246220359681707 0.265750676530610 0.245266869569725 0.240551880999119 0.254574216001049 0.243826826480350 0.239356329547134 0.250715928539219 0.248793610853123 0.245141340032264 2 2|0 +|/ 9260014 9260812 9260347 9257403 9260995 + gene protein_coding_gene FALSE TRUE AT2G21630.1 transport protein, putative similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.2); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to hypothetical protein MG06910.4 [Magnaporthe grisea 70-15] (GB:XP_370413.1); similar to Vesicle coat complex COPII, subunit SEC23 (ISS) [Ostreococcus tauri] (GB:CAL55059.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) -0.103222753688647 -0.693399988820912 0.502591448428561 1 -0.372248429956425 6.92694394874244 -0.103222753688647 0.205965250764093
AT4G29260_at 7.79710718904329 8.48946839214078 7.88141466426426 7.93749159394317 8.07714370103601 8.09824262107896 7.85827540656876 8.50545938255455 7.09503631995719 7.4151772446105 7.58857326037435 7.68853930331322 8.03079476882435 8.00342200647166 7.55276673945854 7.62082495372217 6.82414048839303 7.21177817085889 7.15899308163821 0.161801110589943 0.16048530806588 0.165842624345216 0.163378194523202 0.156967584595430 0.174171340673034 0.158320589579500 0.163180887062099 0.188268975914676 0.166181235860485 0.158689307180636 0.15959523670565 0.156967584595430 0.163556120150949 0.162871424990924 0.163648764012426 0.178616443648573 0.159224413016083 0.156967584595430 4 4|0 -|/ 14422624 14423212 14422942.4 14422163 14423609 - gene protein_coding_gene FALSE TRUE AT4G29260.1 acid phosphatase class B family protein similar to acid phosphatase class B family protein [Arabidopsis thaliana] (TAIR:AT4G29270.1); similar to Plant acid phosphatase [Medicago truncatula] (GB:ABE84853.1); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519); contains InterPro domain Plant acid phosphatase; (InterPro:IPR010028) 0.0890158159310737 0.693110439901413 0.502766107018945 1 -0.372442512716871 15.4746622905766 0.0890158159310737 0.164338245171169
AT2G35030_at 1.68007912090680 1.67876496063479 1.3157539939092 1.54937922951864 1.38907517859819 1.83243176579472 1.56037564563861 1.46406223861079 1.79245202128609 1.86339185071792 1.89553469686833 2.09690563007461 1.61295772431758 1.79844024488235 1.56974921847680 1.58186401730010 1.32714924101760 1.77622715748764 1.64759212333075 0.184053325494099 0.186323128806464 0.189159800514748 0.191218493751597 0.186058473046650 0.182961772674578 0.180801600760244 0.186426675538224 0.185111049856801 0.20522038423436 0.180801600760244 0.183880796439816 0.180801600760244 0.185988514795429 0.181075468620452 0.188852177345490 0.185265995263648 0.192627523208346 0.185576801274665 2 2 - 14768224 14768734 14768536.818 14767948 14770156 - gene protein_coding_gene FALSE TRUE AT2G35030.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09410.1); similar to hypothetical protein LOC_Os11g24530 [Oryza sativa (japonica cultivar-group)] (GB:AAX92992.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0673094783171772 -0.693023959664201 0.502818279809 1 -0.372500465567099 3.29632301157549 -0.0673094783171772 0.0883128001206635
AT1G56520_at 3.90837305783348 3.80243562091909 3.5640925989348 3.38213110355987 3.45316649861362 3.24327766392216 3.14757395091356 3.1756433919591 3.14049803408724 3.33227607683425 3.04498847492046 3.36604840288773 3.12275979500724 2.89941091572223 3.23814436660325 2.97095567155807 3.29719066270299 3.16226233097211 3.00799331215086 0.224727658376540 0.222635138519535 0.227390798633929 0.221585441572032 0.221822351548246 0.225692364990030 0.240784344457902 0.231012051242968 0.228902512630201 0.229976478788179 0.230878726981811 0.227415199942500 0.228994142702316 0.229520840116327 0.229241015712782 0.225759453254694 0.238642365215537 0.232523756356090 0.224685677607736 1 1 - 21179282 21179847 21179578.364 21178433 21182585 - gene protein_coding_gene FALSE TRUE AT1G56520.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56510.1); similar to RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G64070.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56540.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.0601876346463587 -0.692781772718846 0.502964406530179 1 -0.372662726897217 6.60857467845073 -0.0601876346463587 0.0516775948303302
AT2G37730_at 1.99700953157335 1.90875688558836 1.74123092753351 1.83167526163921 1.48578683299328 2.35856626264759 1.50215504379353 2.00889990684614 2.28273395092451 2.45549223654695 2.43159264087434 1.76891997837166 2.39330244304342 2.22482023981727 2.22672566920515 2.39171503582706 2.59768672435839 2.34896552063873 2.71296402022584 0.226290880702294 0.224456625439525 0.226333816989401 0.22725537624243 0.234666312913835 0.226027304350622 0.224452025261357 0.218903422344995 0.230974873476795 0.227695625673175 0.218130805227272 0.22665379778608 0.223320368513203 0.216857917744068 0.22636459497647 0.218702112091842 0.225285748972348 0.223601177976362 0.220138045160713 2 2 - 15829273 15830016 15829665.636 15829264 15831616 - gene protein_coding_gene FALSE TRUE AT2G37730.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT3G11420.1); similar to Os03g0269900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049681.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) -0.0928272792311871 -0.692758912220809 0.502978201040832 1 -0.372678040397422 4.24510813195159 -0.0928272792311871 0.176014799151123
AT3G05240_at 2.17305668790983 2.26498202205405 1.93605657642662 1.96625090062313 2.18708573220768 2.05580010017955 2.24835906203219 2.23531323568889 2.36265165979395 2.32809247474127 2.06420137040457 2.29631388571119 1.97311951536663 1.96586536342441 2.8926924044237 2.65321629190395 2.5881998731363 2.30682665201097 2.098789454705 0.183274642379438 0.195457202250560 0.187191713989470 0.193431334556955 0.190663699060808 0.18971782709927 0.186381338411694 0.194786633707371 0.183274642379438 0.188207719191979 0.189732902444373 0.183274642379438 0.185720551831699 0.197686062271095 0.188427321669358 0.183274642379438 0.183274642379438 0.187129773023857 0.192284267691681 3 3 - 1493771 1494215 1494001.091 1493690 1495387 - gene protein_coding_gene FALSE TRUE AT3G05240.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G29760.1); similar to selenium binding protein-like protein [Cucumis melo] (GB:AAO45757.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0573764340471768 -0.692702174712088 0.503012438647295 1 -0.372716045014384 4.43622918095414 -0.0573764340471768 0.0283133904790974
AFFX-r2-Bs-lys-3_at 2.38472065065076 2.93416851428514 3.68136186207767 3.17848721775659 3.92354911313109 3.03344265659834 3.76366586546975 3.11717272427246 4.97960700475536 4.75104166134703 4.91293796260529 5.28435522393942 4.28573937091484 4.91735282118431 4.28181951208015 4.89432898816202 4.65351289618676 3.86485446846747 4.72297406475091 0.254732905140191 0.246303609919268 0.256140848929114 0.266758166392063 0.246343797698451 0.244745349301168 0.248366638346341 0.245620807382486 0.251808234383912 0.249827054781215 0.248465833054925 0.246892919030202 0.245567212418172 0.248428738399222 0.260502196184151 0.245656288331314 0.257343177155529 0.251524506650087 0.251368142258706 NA NA NA NA NA FALSE FALSE 0.111633342773082 0.69235517419349 0.503221862796699 1 -0.372948415592918 7.97943952506038 0.111633342773082 0.229910057174729
AT4G10540_at 1.18864348729095 0.824875893074123 1.02663962198546 0.507287409468729 0.87576224015849 1.00483767044917 0.716716291434965 1.03757384545556 0.856110421398166 0.962129869706736 0.816183491049817 0.81130814213628 1.02267570396891 1.26002290967267 1.25422856379172 0.80682837917674 0.865153805366107 0.3889803627203 1.08709109723117 0.178331358811645 0.182783355911753 0.197261898257724 0.188372594654349 0.183640010798341 0.179559439014347 0.192463554830736 0.177002804183719 0.198362248422262 0.177489930993448 0.187007162942263 0.183147598561295 0.187979085784583 0.189326610036416 0.182844702151580 0.180605960743956 0.177002804183719 0.187307593252595 0.177002804183719 4 4 - 6512517 6512956 6512714.909 6512511 6515739 - gene protein_coding_gene FALSE TRUE AT4G10540.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10510.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10550.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32940.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.076795885087572 -0.692187652198034 0.503322985664931 1 -0.373060559617378 1.83360029033835 -0.076795885087572 0.124990954142887
AT3G49680_at 10.5451367601519 10.4494319232024 10.2244656237825 10.1529586886724 10.5484492587799 10.008367339286 11.1614926887297 11.1050485559473 9.71830165727958 10.8697081526217 11.0093845045296 10.8995304616497 10.7161291762474 10.9681569690086 10.7871663161437 10.6314321103811 10.5012077475668 10.7716961096784 10.4380709493848 0.0824336172085925 0.080127171518952 0.0894084131747414 0.0838328906659906 0.0810578925778184 0.0878259322663065 0.0825452608564263 0.0817547209863322 0.0937277320057543 0.080127171518952 0.080127171518952 0.080127171518952 0.0826435282896183 0.080127171518952 0.0814941998384588 0.080127171518952 0.080127171518952 0.0814633434401124 0.0821544570556752 3 3 + 18435323 18436385 18435851.273 18433634 18436677 + gene protein_coding_gene FALSE TRUE AT3G49680.1 ATBCAT-3; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3) (BCAT3) [Arabidopsis Thaliana] (GB:Q9M401;GB:Q8LAT6;GB:Q9M2Z0); similar to ATBCAT-5, branched-chain-amino-acid transaminase/ catalytic [Arabidopsis thaliana] (TAIR:AT5G65780.1); similar to branched-chain amino acid aminotransferase [Solanum tuberosum] (GB:AAF07192.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786) -0.069078124869491 -0.691835952748969 0.503535325191571 1 -0.373295917021142 21.0882262769003 -0.069078124869491 0.0962201169919164
AT3G10890_at 1.15680007051306 0.555738639656283 1.36709314372715 0.555134533042551 0.78888625515772 0.917904761732629 0.805333684950308 0.91950478846913 0.947806912633566 0.817827641505422 0.592632368457625 0.619467329455349 0.93637479271824 0.864295014180448 1.33694865851097 0.617725525249426 1.23316313077509 1.09466407662612 0.554967540677969 0.211833337350414 0.21640828733318 0.221377852551922 0.216660991582595 0.21629962175495 0.216000703884115 0.222283548704816 0.208882281577482 0.215495921328457 0.208471165864368 0.209961437317950 0.208471165864368 0.216446112149896 0.217258349362909 0.208471165864368 0.212099343291516 0.213249061040524 0.216537866980612 0.221097275813226 3 3 - 3407549 3408120 3407801.909 3407460 3409005 - gene protein_coding_gene FALSE TRUE AT3G10890.1 (1-4)-beta-mannan endohydrolase, putative similar to (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G10900.1); similar to hypothetical protein [Thellun (GB:ABB45852.1); contains InterPro domain Glycoside hydrolase, family 5; (InterPro:IPR001547) 0.0931426039544111 0.691784195261752 0.503566578481506 1 -0.373330543969436 1.72602093145726 0.0931426039544111 0.177347889034143
AT4G33230_at 1.20821239334949 1.13614356679890 1.05795008704551 1.22816733933597 0.5258587672517 1.32763559728641 1.19447492727424 0.971025301648604 1.06251011070681 1.40048562847938 1.18815086394863 0.576918697612128 1.13874155000351 1.11900705183488 1.37522269209393 0.898074785479286 1.53812218844752 1.21792858933009 1.15478436387485 0.196604165372296 0.197992853194721 0.197472333699626 0.194220465705226 0.196597867576040 0.194220465705226 0.194935041839052 0.199108052755988 0.203821452473983 0.194273441825925 0.198413032116928 0.194736438447159 0.194580787637269 0.206999814034604 0.199792234685066 0.203555485826914 0.215959047786193 0.208104697144365 0.204704329935661 4 4 - 16026601 16027170 16026894.818 16026595 16028758 - gene protein_coding_gene FALSE TRUE AT4G33230.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G26450.1); similar to pectin methylesterase [Salix (GB:BAA89480.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.0834834991072546 -0.691646488186222 0.503649737351507 1 -0.373422661694653 2.24990724918090 -0.0834834991072546 0.147548120370684
AT3G04470_at 6.86608191428797 7.00853569762162 6.04932226017777 6.55886010939495 6.8824070091545 6.73553705906354 6.609342238016 6.92212110879474 6.76733019243025 6.62195830682428 7.32043129898795 7.1970841243441 6.7503297967095 7.11038265740756 7.25443305788467 7.12670234499316 5.9272661747233 6.65948581876088 6.91491855632054 0.201505780420074 0.186536244258913 0.193249602835758 0.185418488299076 0.1953816540449 0.209014081706631 0.191066300950909 0.195428746286195 0.197528672769802 0.190532525872804 0.189123582745115 0.188699349662651 0.193037699616262 0.20385167977003 0.204169652097871 0.186346529358039 0.224230531712849 0.196910944969201 0.192057546926951 3 3|0 -|/ 1189856 1190398 1190105.2 1189646 1192644 - gene protein_coding_gene FALSE TRUE AT3G04470.1 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G04780.1); similar to Os02g0810100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048467.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80109.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0723966197655106 -0.691460790736904 0.503761889878581 1 -0.373546855675269 13.5471926384396 -0.0723966197655106 0.109356760393296
AT4G32930_at 8.83277781283152 8.99438241737882 8.90367212526241 8.85778172622964 8.84688314997939 8.55313735693388 8.93702956103677 8.83457700607622 8.31795950533503 8.47705749105351 8.58416600929892 8.81670545768388 8.51830973214602 8.61828963856629 8.63843131764323 8.90195323865231 8.61997818449234 8.35015719212872 8.40042971218908 0.122672030779848 0.120577015890987 0.127005024278467 0.121263889518263 0.123221132418824 0.122922187340176 0.125620366111891 0.125022154635823 0.141198226132132 0.123650545010463 0.122477726223699 0.125170716665697 0.123894709291725 0.125961533365036 0.124878896628321 0.122790631320591 0.125227322330253 0.127539399916684 0.124137975737822 4 4|0 +|/ 15898892 15900153 15899613 15898840 15900292 + gene protein_coding_gene FALSE TRUE AT4G32930.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45078.1); similar to Os01g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043357.1); contains InterPro domain Protein of unknown function DUF866, eukaryotic; (InterPro:IPR008584) 0.0615967502022126 0.691170014455688 0.503937535338703 1 -0.37374126517974 17.3597706857256 0.0615967502022126 0.0611853097937043
AT1G21410_at 7.82582581340235 7.98277331884177 8.79636831072597 9.02608295835315 9.14792721764123 8.93983506441417 9.38306188197837 9.28988921126708 7.42823429020582 8.46865072228413 7.24901744630223 6.23420429038347 8.32156684431144 8.08760282578024 6.82301880350846 7.83920883078677 8.94165875521241 7.84938743244817 7.80858911370563 0.166328733847549 0.16518596912995 0.16518596912995 0.171914923844517 0.172588265734085 0.178280841153691 0.174030641108195 0.175761305351111 0.182193466104759 0.167944865404824 0.177548331775951 0.193717155492635 0.16518596912995 0.173811704057250 0.178949912562815 0.165998520359705 0.169005099799855 0.169102530793558 0.175671603217638 1 1 + 7498775 7499330 7499137.727 7497130 7499568 + gene protein_coding_gene FALSE TRUE AT1G21410.1 F-box family protein AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. similar to ATSKP2,2 (ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G77000.1); similar to MGC81000 protein [Xenopus laevis] (GB:AAH77969.1); similar to Os05g0425700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055598.1); similar to Os01g0881900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045004.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.0617746381355149 0.691071527138387 0.503997035668464 1 -0.373807095747230 16.5839869032398 0.0617746381355149 0.0622479404864137
AT1G32300_at 1.61593068256263 1.39444675097484 1.79852126104782 1.66278831347947 1.33944901628469 1.86090428550112 1.74105822159115 1.89182850203156 1.88237698227852 1.9842015682176 2.01100135476507 1.53951083674080 1.67003020547872 1.82997540500217 2.07387259949726 1.68497786133682 1.64351968997534 1.85756846289179 1.93950757070672 0.205781076263455 0.194794804517666 0.195314519703475 0.197195193034148 0.195254603471565 0.201468658635368 0.197346626866055 0.204645335220319 0.196879249211027 0.195541479312439 0.203845694358267 0.197608799179902 0.196821301873922 0.193674245419369 0.202813072178507 0.200075276713125 0.207298341864326 0.196645340549741 0.203873243162273 1 1 + 11652783 11653207 11652963.182 11651322 11653345 + gene protein_coding_gene FALSE TRUE AT1G32300.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46750.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46760.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G56490.1); similar to Os08g0114300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060850.1); similar to Putative FAD binding domain containing protein, identical [Solanum tuberosum] (GB:AAV31183.1); contains InterPro domain Plant-specific FAD-dependent oxidoreductase; (InterPro:IPR010030); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) -0.0709776543258602 -0.690936506528749 0.504078614180885 1 -0.373897331909599 3.52520042536513 -0.0709776543258602 0.104138919175772
AT1G16310_at 3.56784762243746 4.10479873195482 4.31806251290683 5.17215817535179 5.44790438604606 4.26412091475928 5.10401504728809 4.9272604957213 2.64958229096906 3.62139132006501 2.85111781439375 2.93078516406821 3.38941542474252 3.29121069618887 2.81546225372065 3.36501115864562 3.1849114183 2.75641630351552 3.31264921452166 0.25301464997511 0.247654719406329 0.250973798138574 0.245268428577052 0.255792886664743 0.253509313905163 0.249585721245409 0.245419828210443 0.246437097567995 0.245268428577052 0.262747342801553 0.260432590531210 0.246480225434516 0.247186626701255 0.251434912866964 0.248520619189413 0.253358550489412 0.247077868495824 0.247973600668448 1 1 + 5579957 5580538 5580230.727 5578425 5580687 + gene protein_coding_gene FALSE TRUE AT1G16310.1 cation efflux family protein similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G79520.1); similar to cation diffusion facilitator 9 [Stylosanthes hamata] (GB:AAO38708.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.126540680130278 0.69092596220596 0.504084985322453 1 -0.373904378152892 7.7470620963326 0.126540680130278 0.270894476061201
AT3G25710_at 2.31482138300251 2.34899682081589 2.65308900059795 2.56840998237397 2.12062116093111 2.66226695932056 3.13395664372975 3.78087782441745 2.51673299353169 2.42591451213088 2.39517889231392 2.73070557647822 3.03831130488946 2.44351463477160 3.86145975537474 3.10116568901985 2.58536852288641 2.23952129036709 2.77379593503434 0.195445399976315 0.197462577891577 0.199554614665408 0.1921093081967 0.192086062381449 0.199489169629303 0.192086062381449 0.208906778592002 0.200139896317201 0.192108381892649 0.197527172173161 0.195063364654029 0.193532127223735 0.204294517770107 0.201946675602161 0.192086062381449 0.198653480615462 0.212232495591106 0.199274373438338 3 3 + 9371276 9372030 9371877.727 9370756 9372631 + gene protein_coding_gene FALSE TRUE AT3G25710.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G68810.1); similar to Os08g0432800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061870.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94029.1); similar to Os03g0260600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049619.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.0831554987442404 -0.690684394508022 0.504230959818804 1 -0.374065778967525 5.3836554828128 -0.0831554987442404 0.146864763282831
AT4G28890_at 1.20366549152574 1.04339243558569 1.22261536503750 1.21816610527752 0.811227771014271 1.08182905145231 1.02546082189175 1.03976438569722 1.35014973307678 1.18707041647209 1.25171676406585 0.786308948204439 1.29692086144357 0.79357043067894 1.10536572858808 1.18383682694343 1.53948966787288 0.999240975127459 1.20021462082697 0.187561068671298 0.185492314482372 0.191569821258041 0.202106498297481 0.192630462647796 0.196014612621969 0.190494563635408 0.188560232801841 0.197116834998072 0.188059886189540 0.190636258809519 0.185492314482372 0.193184346779324 0.188707842325549 0.188160276721893 0.191310201919334 0.193809040887158 0.190053151408846 0.188953508090564 4 4 - 14256507 14256938 14256679.727 14256339 14257726 - gene protein_coding_gene FALSE TRUE AT4G28890.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL4J precursor (ATL4J) [Arabidopsis Thaliana] (GB:Q5XF85;GB:Q9SV57); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G20030.1); similar to RING zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53905.1); similar to Os05g0596500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056520.1); similar to Os06g0695900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058454.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0604332626196996 -0.690609245829408 0.504276375848457 1 -0.37411597826485 2.26344911118068 -0.0604332626196996 0.054488011696995
AT3G02740_at 8.9320449587529 9.26604793918218 8.90260672105549 8.63309057505051 9.18073857850454 8.48718433032839 7.9228319764018 8.1477811729167 8.34831464167045 8.42364563202856 8.20865677288524 8.48948502536321 8.22176602323894 8.0618029468731 7.2685603493417 7.74859454592381 7.71334833807528 8.02077734581461 8.32697888232036 0.187970118526448 0.188655143390232 0.195425651065856 0.201093250527770 0.193006486918207 0.211284169427467 0.196037695986376 0.200796366961068 0.208605508369844 0.198503771829856 0.189684624558383 0.188448896618841 0.193960669659418 0.191264869750162 0.20210537744477 0.190757579052887 0.211240384188359 0.202346302866065 0.191915228258565 3 3|0 +|/ 592033 593065 592577.75 590455 593193 + gene protein_coding_gene FALSE TRUE AT3G02740.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G36260.1); similar to Os02g0473200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046837.1); similar to Eukaryotic aspartyl protease [Medicago truncatula] (GB:ABE89788.1); similar to OSJNBa0008A08.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01597.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.082980297072819 -0.690386108130028 0.50441124342599 1 -0.374265004906753 16.8505092667470 -0.082980297072819 0.146414532367938
AT1G47420_at 11.0032337233699 11.2856910883040 11.4792251511868 11.4097912070602 11.2622474519599 11.2331210150313 11.1614981729816 11.4377499403146 11.1450411703007 11.0663552849143 11.0384073400246 11.0780485538776 10.9978679984471 11.1527500958603 10.9405996921265 11.0963941604101 10.8780699717200 11.1374072807486 10.9022806449434 0.0667122997497067 0.0649025528569182 0.0681166083375548 0.0679163275108305 0.0682904364394862 0.0671804683820221 0.0755774401964633 0.0649025528569182 0.067092637765076 0.0682754061415672 0.0649025528569182 0.0650386077910641 0.0702265402039861 0.0649025528569182 0.0671229967546201 0.0667561015792318 0.0731858793185296 0.0663666026437598 0.0678413650227153 1 1|0 -|/ 17398225 17399267 17398763.444 17397958 17399695 - gene protein_coding_gene FALSE TRUE AT1G47420.1 Identical to Unknown protein At1g47420, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9SX77); similar to APFI, carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G47260.1); similar to unknown [Hordeum vulgare subsp. vulgare] (GB:AAL77110.1) 0.0630518724996918 0.690132827076948 0.504564356410466 1 -0.374434110254674 22.3229874704617 0.0630518724996918 0.0696029695599567
AT2G36850_at 8.55954961550867 8.7143290661331 8.53231957243779 8.71649316524972 9.06864412980964 8.49242237215073 9.0439653780834 8.85121810528583 8.83151504377622 8.62017646487431 8.49199477355084 8.77676569279685 8.6959906255045 8.75665353866417 8.53888597057528 8.89433977729301 8.54562429500056 8.6417087122774 8.7214635770953 0.136618469431027 0.128635508395151 0.13594574183333 0.124734579509060 0.128672822253216 0.136316230563836 0.131139436291857 0.124967487394793 0.13640833251161 0.126533730989519 0.129328538218621 0.127505714887933 0.123023667881126 0.12760782643626 0.131761091527459 0.124903160645513 0.136534632574323 0.126985282454216 0.127074179884367 2 2 - 15462038 15462912 15462346.455 15461776 15476446 - gene protein_coding_gene FALSE TRUE AT2G36850.1 ATGSL08 (GLUCAN SYNTHASE-LIKE 8); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a gene similar to callose synthase similar to ATGSL07 (GLUCAN SYNTHASE-LIKE 7), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G06490.1); similar to ATGSL10 (GLUCAN SYNTHASE-LIKE 10), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT3G07160.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to Putative callose synthase [Oryza sativa (japonica cultivar-group)] (GB:AAO15292.1); similar to putative beta 1,3 glucan synthase [Oryza sativa (japonica cultivar-group)] (GB:BAD67750.1); similar to putative callose synthase catalytic subunit [Gossypium hirsutum] (GB:AAD25952.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.0732176683574506 -0.689762025214985 0.504788563354123 1 -0.374681577589634 17.4434329014772 -0.0732176683574506 0.113090874015262
AT1G23320_at 1.11677224567236 1.15675294521690 1.14283606920979 1.41877065671821 1.18705293126627 1.15739104915586 1.18363184251602 1.46572847157576 1.57320476097037 1.46091522288852 1.15000283940461 1.20937556423380 0.974033615679636 1.92437476375973 1.06861451144858 1.34070486877429 1.8820793341149 1.66673695385059 1.53640970178422 0.192931785251064 0.194864555692109 0.194006941846376 0.200986422850301 0.196472298261634 0.200424774651348 0.198868329620711 0.198210946078554 0.193223356826167 0.198803852882832 0.192931785251064 0.198562317162973 0.196315681549791 0.192931785251064 0.201645175111471 0.198201108410392 0.199902923235225 0.199540488627240 0.199635555139503 1 1|0 -|/ 8273413 8274318 8273737.889 8273412 8275339 - gene protein_coding_gene FALSE TRUE AT1G23320.1 alliinase family protein similar to alliinase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70560.1); similar to Alliinase EGF-like; Allinase, C-terminal [Medicago truncatula] (GB:ABE79686.1); contains InterPro domain Allinase, C-terminal; (InterPro:IPR006948) -0.062864144231915 -0.689703702121652 0.504823834124978 1 -0.374720490491611 2.69136712722772 -0.062864144231915 0.0688306707656743
AT4G30360_at 5.22201270726692 5.85871575872459 5.03194437565875 5.26782596915697 5.82683503132064 5.51295459005612 4.64389508779218 4.85260564017416 5.1936218126134 4.65258945487190 4.59201462165861 4.91174028955594 5.03283675514164 5.03572248088427 4.02974198578486 4.9859908797601 4.29836812728785 4.53743915639672 4.50917644892694 0.207954525873386 0.196351959405695 0.212857358095162 0.199261251895643 0.207698558313303 0.209454590670435 0.200861750154500 0.196266348809772 0.207610359631041 0.209843790407893 0.20514998803135 0.194876090579079 0.197154149364739 0.199765501392258 0.207839373441128 0.196216106679845 0.220277358335146 0.201628783225138 0.198457481613011 4 4 - 14855083 14855633 14855377.636 14854817 14858009 - gene protein_coding_gene FALSE TRUE AT4G30360.1 ATCNGC17 (cyclic nucleotide gated channel 17); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Probable cyclic nucleotide-gated ion channel 17 (Cyclic nucleotide- and calmodulin-regulated ion channel 17) (CNGC17) [Arabidopsis Thaliana] (GB:Q8L7Z0;GB:Q9M0C4); similar to ATCNGC16 (cyclic nucleotide gated channel 16), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G48010.1); similar to ATCNGC14 (cyclic nucleotide gated channel 14), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G24610.1); similar to ATCNGC18 (cyclic nucleotide-gated ion channel 18), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT5G14870.1); similar to putative cyclic nucleotide and calmodulin-regulated ion channel [Oryza sativa (japonica cultivar-group)] (GB:BAD36523.1); similar to Cyclic nucleotide-binding; Ion transport protein [Medicago truncatula] (GB:ABE89042.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.0792176206566675 0.689348712439562 0.505038545415803 1 -0.374957273415247 10.0086541579502 0.0792176206566675 0.134394738585784
AT1G72600_at 2.4178790432446 2.46289592160561 2.27724957215725 2.41259346924469 2.48018243414728 2.58102309017277 2.03985335050769 2.49666812260822 2.47743917869438 2.61313900698868 2.67050247639994 2.41455297464442 2.7101426314043 2.46784871250795 2.33982270084952 2.33890425205438 2.34591781070294 2.19551688088532 2.86235076689296 0.192206545456115 0.195303219062248 0.196168492153273 0.192314330458957 0.200982961629876 0.197395448673508 0.204808089646794 0.199420706703542 0.202303901594773 0.212158053756644 0.198153457746434 0.192206545456115 0.198589745200575 0.201993877086166 0.194410040164568 0.192911615274263 0.195922240869768 0.197454836918283 0.195109176994820 1 1 + 27341938 27342305 27342136.636 27341787 27342377 + gene protein_coding_gene FALSE TRUE AT1G72600.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G54215.1); similar to extensin protein-like-related [Medicago truncatula] (GB:ABE92432.1) -0.066068615327637 -0.688835359434742 0.505349138114209 1 -0.375299490607751 4.93923181168923 -0.066068615327637 0.0846364811409574
AT1G61720_at 0.566058609565548 0.945380580145237 0.63245707124764 0.953009145569006 0.729748660543358 0.960796910978106 0.94567219894711 0.65012192183232 0.588462653024346 0.984863813727576 0.321336315508585 0.546204077808854 1.01559228270550 0.67056554747515 0.80948878790561 0.524421675220626 0.84807104250137 0.807237259969442 1.06193457633453 0.206853736768363 0.203390383543734 0.207521349190597 0.206163695133367 0.205356022395724 0.202670684934739 0.20607397329262 0.209737717507387 0.206697971238968 0.211815847119241 0.202670684934739 0.202670684934739 0.204780377316909 0.202670684934739 0.205459286166233 0.207391832300461 0.209820052630953 0.203075741222999 0.202670684934739 1 0|1 /|- 22795111 22795592 22795406 22794833 22796465 - gene protein_coding_gene FALSE TRUE AT1G61720.1 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Identical to Leucoanthocyanidin reductase (EC 1.3.1.77) (LAR) (Protein BANYULS) (Anthocyanin spotted testa) (ast) (BAN) [Arabidopsis Thaliana] (GB:Q9SEV0;GB:Q680A7;GB:Q9SYA8); similar to DFR (DIHYDROFLAVONOL 4-REDUCTASE), dihydrokaempferol 4-reductase [Arabidopsis thaliana] (TAIR:AT5G42800.1); similar to anthocyanidin reductase [Vitis vinifera] (GB:BAD89742.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.071680552298309 -0.688767500945385 0.505390202969459 1 -0.375344709839842 1.58354812301973 -0.071680552298309 0.107707872849790
AT1G75230_at 5.55684639952275 5.83873723364186 5.37560686182942 5.7855944984095 5.93486772678335 5.42145475086207 5.650598146457 5.48622494357232 5.60955824395045 4.92191835139231 4.94237736314785 4.89018156211481 4.93420235868611 4.68684353318994 5.08360917542935 4.96140531989101 5.43230483153209 5.15704693001892 4.9521766657562 0.194630780498359 0.195094139206452 0.201275831126349 0.199454965600129 0.199531311585275 0.212273855113907 0.194454266609545 0.193362119706871 0.203305353788766 0.194459757163473 0.199023143068629 0.195528189871398 0.194597647541273 0.203813827244503 0.200453195200205 0.197548829551747 0.201151183308786 0.202577113509837 0.193950458538693 1 1 + 28238689 28239211 28238925.727 28238010 28240402 + gene protein_coding_gene FALSE TRUE AT1G75230.1|AT1G75230.2 HhH-GPD base excision DNA repair family protein similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G19480.1); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265)|similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G19480.2); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.0769710453878927 -0.688703288284706 0.505429063385144 1 -0.375387495847478 10.7173483891102 -0.0769710453878927 0.126952285462021
AT3G06480_at 4.28461918413722 4.21074781168031 4.56950534941624 4.17961061865176 4.64671707503012 3.57996910736822 4.55628824740779 4.15593685721117 4.17485245067317 4.32870304152006 4.80843665039979 4.42462202672032 5.06153716438046 4.99366445293613 4.47644757381351 5.07433053723773 4.34798403747152 3.91723710719346 4.61567657077639 0.237423468555676 0.241626917825845 0.237263970324128 0.245062009191085 0.241589909857211 0.258778183253005 0.237497625756651 0.236117955692695 0.251746699694809 0.236638386070363 0.236418775797266 0.236117955692695 0.236585696163605 0.236117955692695 0.2369642730322 0.239387030370588 0.247021497228164 0.237948001021726 0.239467567451465 3 3 - 1985719 1986244 1985944.818 1985461 1990159 - gene protein_coding_gene FALSE TRUE AT3G06480.1 DEAD box RNA helicase, putative Identical to Probable DEAD-box ATP-dependent RNA helicase 40 (EC 3.6.1.-) (RH40) [Arabidopsis Thaliana] (GB:Q9SQV1); similar to DRH1 (DEAD box RNA helicase 1) [Arabidopsis thaliana] (TAIR:AT3G01540.1); similar to P72 DEAD box protein [Pisum sativum] (GB:AAF04377.1); similar to retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95389.1); similar to WW/Rsp5/WWP; Helicase, C-terminal [Medicago truncatula] (GB:ABE92110.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.103503800976688 0.688616552428143 0.505481557312674 1 -0.37544528368617 8.77847918040901 0.103503800976688 0.208795120143926
AT1G02670_at 2.11785492418345 1.90888456298721 1.95275868886083 2.39993954110202 2.04335003512693 1.73204043576964 1.93567355270430 1.66353120897068 2.34596562601298 2.19945214714482 2.45972779944688 2.36729977071180 1.89191893136885 2.08241120285909 2.58860429375568 2.22710883400329 2.16871614665186 2.30841729765389 2.18077389238334 0.191975698042863 0.196647269381465 0.194613364574590 0.199688713820703 0.191975698042863 0.199745072030271 0.193483472654447 0.194601730531388 0.199865325699408 0.197551227755441 0.193152285624149 0.196904187824050 0.194577957516631 0.200962707869005 0.201568436447984 0.197979950403398 0.19673886293659 0.200978893952589 0.201708901575483 1 1|0 +|/ 579245 580273 579799 576046 580299 + gene protein_coding_gene FALSE TRUE AT1G02670.1 DNA repair protein, putative similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05120.1); similar to putative DNA repair protein rhp16 [Oryza sativa (japonica cultivar-group)] (GB:BAD31171.1); similar to Os07g0511500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059763.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0726238795230735 0.688366053465011 0.50563318170978 1 -0.375612141639831 4.2211738302482 0.0726238795230735 0.111430870716847
AT3G18630_at 2.39018197648012 2.76664819572824 3.32757749418315 2.91101893991588 2.07830211012507 2.01721413398998 2.35471057080318 2.96833983772391 2.56793270588665 2.73119818646386 2.51174036317773 2.80575513456526 2.82291521058534 2.14034085408828 2.66020396889753 2.4773351447417 2.48622037033850 2.09645293147507 2.58435345505319 0.233363364953521 0.227906006662055 0.240840418311304 0.229227754939367 0.229153780952760 0.237686582634272 0.236676485010398 0.227580113139084 0.250750621561265 0.242251086198420 0.234432191742761 0.229396819114636 0.229625539121730 0.228010075760358 0.228678658387636 0.223737583999747 0.234037318132879 0.230124121497717 0.234525054564102 3 3|0 -|/ 6411333 6412463 6411964 6411043 6413074 - gene protein_coding_gene FALSE TRUE AT3G18630.1 uracil DNA glycosylase family protein similar to uracil DNA N-glycosylase [Arabidopsis thaliana] (TAIR:AT2G10550.1); similar to H0403D02.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86073.1); similar to Os04g0673400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054232.1); similar to OSJNBa0018M05.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03228.1); contains InterPro domain Uracil-DNA glycosylase, not poxvirus; (InterPro:IPR003249); contains InterPro domain Uracil-DNA glycosylase; (InterPro:IPR002043); contains InterPro domain Uracil-DNA glycosylase superfamily; (InterPro:IPR005122) -0.0820747970989494 -0.688195278199692 0.50573656587224 1 -0.375725863770651 5.16572346388614 -0.0820747970989494 0.144323902450401
AT1G71830_at 1.52546546991865 1.89222694666941 1.54089939294892 1.39219348865825 1.83198373520033 1.47346181082391 1.64219132824210 2.17468327476683 2.54901493105456 2.89367294015655 3.11425741296737 3.64261986641618 2.9866865918146 2.88723962405896 3.13189345898032 2.69136075300044 1.86830250114365 2.38841428704287 2.79432423126290 0.248332696643199 0.253309476606338 0.251788013953489 0.267495885412826 0.255922303343569 0.256298003119831 0.26005768573831 0.249241272277016 0.248299543962399 0.248004001139225 0.247910819433904 0.269855025729824 0.247910819433904 0.257468508343034 0.254763053380063 0.253192259041367 0.258313285315568 0.268685488174037 0.268066078763779 1 1 + 27024833 27025473 27025202.364 27021820 27025779 + gene protein_coding_gene FALSE TRUE AT1G71830.1 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later similar to SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G34210.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4), protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13790.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase [Cocos nucifera] (GB:AAV58833.2); similar to somatic embryogenesis receptor kinase 1 [Citrus unshiu] (GB:BAD32780.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.077915518444007 -0.687953785246687 0.505882782906493 1 -0.375886634160098 4.47639693727991 -0.077915518444007 0.130505829880288
AT3G60810_at 7.22390783431618 7.24565307260016 6.92838776004479 6.58159394312057 7.09235570259036 6.95367343600127 7.35005672950893 7.230583127067 6.77692276063955 6.64259710126062 7.29620005610359 7.15689042514727 6.51364510495536 6.93534596230188 7.34113270172795 6.83100522153057 6.85640306438677 7.19142841173874 6.88081673881264 0.198646142482312 0.197246028492024 0.191555496999357 0.195893953611286 0.188597326000977 0.201239349627818 0.189319359928166 0.190912054848727 0.193261401443643 0.190648276183112 0.188819739269359 0.187224562220456 0.20259917587126 0.203341650742787 0.197581253360987 0.186600120294803 0.199549453911364 0.203268249270143 0.19661512005668 3 3|0 +|/ 22481633 22482704 22482209.5 22481494 22482881 + gene protein_coding_gene FALSE TRUE AT3G60810.1|AT3G60810.2 similar to Protein of unknown function DUF1499 [Medicago truncatula] (GB:ABE92390.1); contains InterPro domain Protein of unknown function DUF1499; (InterPro:IPR010865) -0.0625349894257867 -0.687895699066575 0.505917956209913 1 -0.375925296518573 13.9667940683515 -0.0625349894257867 0.0679656675604457
AT3G10120_at 3.60529260439204 4.82531399424332 2.17255750464741 2.51388402567402 4.01557329851397 4.02236165537254 2.44680960566861 2.41873367308567 1.92575414158985 2.22881779638456 2.18083546839392 2.54408731725417 2.41524269711447 2.13632211874339 1.99924935228537 2.68588367963015 2.33426160443675 1.68085471035661 2.800394122303 0.246801379876525 0.238344058753740 0.221138129504383 0.223398317011634 0.231525990062655 0.241549394838471 0.223837901964151 0.224682337436443 0.226365393515605 0.226664256730026 0.221138129504383 0.221138129504383 0.230472627047176 0.222989173013540 0.224932658250738 0.221138129504383 0.221772059019271 0.223551185110566 0.226440918233780 3 3 + 3130233 3130645 3130425.182 3130077 3130896 + gene protein_coding_gene FALSE TRUE AT3G10120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03890.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77863.1) -0.107086624930520 -0.687747734569063 0.506007560761451 1 -0.376023768762265 5.53527286450936 -0.107086624930520 0.219294493433186
AT3G58650_at 2.47268595135561 2.07231917919053 2.10548224595683 2.26553239786950 1.62956441448742 1.92998224995933 1.82552584288543 1.88965158766612 2.47700739102471 2.43461264381346 2.66434030171012 2.41169858868974 2.17406894330610 2.53831075277301 2.51756501078348 2.3071799758536 2.01966907816438 2.5341001939041 2.43408424450043 0.238426539611090 0.233031458378830 0.23802831327447 0.237913524870953 0.22982124780392 0.234174933623705 0.240158791920304 0.241001072966316 0.232783973209778 0.23100136053646 0.243466288042380 0.228493840985067 0.232682993897500 0.231335276190116 0.231996604677365 0.233884769391912 0.228639644734946 0.24476816526907 0.242043706445650 3 3 - 21707377 21707876 21707735.636 21707223 21709828 - gene protein_coding_gene FALSE TRUE AT3G58650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G26910.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05750.2); similar to Os03g0831700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051796.1); similar to Os03g0302900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049873.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078830.1); contains domain Nitric oxide (NO) synthase oxygenase domain (SSF56512) -0.067553400335478 -0.687616709477174 0.506086915089607 1 -0.376110951517177 4.44606033305181 -0.067553400335478 0.0916164842213677
AT1G79550_at 10.8511859214469 10.8258212120404 11.0699642421741 11.0639337680538 10.6041028194936 10.4951361963551 11.2040899542791 11.1612032684388 10.5280468412707 10.7226980639134 10.9142376408853 11.0388381941924 10.7231824387752 10.8987832206572 10.9844992256705 10.8577743830818 10.9227892660882 10.8582362115667 10.5034479862914 0.0954483738936948 0.0955961852244495 0.0981407622428987 0.102495505472054 0.0936208139544636 0.103160706218845 0.0985146386281685 0.100251752476284 0.108245081357340 0.101899253224073 0.0953844787961452 0.0936208139544636 0.0945031934620776 0.0936208139544636 0.0956158110717145 0.0962882594545205 0.0972745677843115 0.0975680669675362 0.101956857881842 1 1 - 29929264 29930061 29929673.636 29928916 29931475 - gene protein_coding_gene FALSE TRUE AT1G79550.1|AT1G79550.2 PGK (PHOSPHOGLYCERATE KINASE) Encodes cytosolic phosphoglycerate kinase (PGK). similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80997.1); similar to cytosolic phosphoglycerate kinase 1 [Populus nigra] (GB:BAA33801.1); similar to Phosphoglycerate kinase, cytosolic (GB:Q42962); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576) 0.0563853881286727 0.687598749822223 0.506097792798048 1 -0.376122900509195 21.6516914410051 0.0563853881286727 0.0207613153536765
AT1G30960_at 2.31741506527697 2.36143222921884 2.34845831762162 2.2800628334987 1.89668239820201 2.25585336078487 2.68335126090428 2.15947120919951 1.74485904079047 1.76630466778482 1.80159018136957 2.02394349506337 1.72024296894423 1.85254290700588 2.18516011879313 1.84627551990865 2.03748274360964 1.91188663671474 2.13460891399611 0.194110697723987 0.195752958141143 0.193362346325781 0.197262808547093 0.199093377757047 0.193216344854921 0.193692815777506 0.199732202052840 0.193487620768822 0.197996678149147 0.193232332404836 0.193216344854921 0.196593206412118 0.195362653035399 0.197224231330844 0.200609058424268 0.208920653475031 0.218364991321693 0.202330423088676 1 0|1 /|- 11037740 11038414 11037971.286 11037597 11039982 - gene protein_coding_gene FALSE TRUE AT1G30960.1 GTP-binding protein (ERG) Identical to GTP-binding protein ERG (ERG) [Arabidopsis Thaliana] (GB:O82653); similar to GTP binding / RNA binding / nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G66470.1); similar to GTP-binding protein ERG (GB:O82626); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain KH, type 2; (InterPro:IPR004044); contains InterPro domain GTP-binding protein Era; (InterPro:IPR005662) -0.072343424860373 -0.687254204800207 0.506306502211223 1 -0.376352079613603 4.18999822381333 -0.072343424860373 0.110818448232062
AT4G23400_at 10.4112641308065 10.5293282895305 10.7799301532778 10.8651706250640 11.0742965037963 10.9248670736736 10.7353099246846 10.8937240934559 12.3276313592707 11.5079035559439 12.3494070318530 11.6885790176119 11.8274432094869 11.8943534210381 11.6362979075412 11.768457598248 11.1070980664336 12.1453035658030 12.0240897113709 0.0742045694905916 0.0708124171577436 0.0804865321084242 0.0752268418353102 0.0717463296886997 0.07311105962219 0.0715249543469492 0.0723342639494152 0.078298213850906 0.0729771287191763 0.0708124171577436 0.0713915431843809 0.0721860913926052 0.0736100248376762 0.0730658562129831 0.0715137234548365 0.0797585717636106 0.0735814974303408 0.0717295312809487 4 4 + 12221426 12222137 12221755.636 12220753 12222380 + gene protein_coding_gene FALSE TRUE AT4G23400.1 PIP1;5/PIP1D (plasma membrane intrinsic protein 1;5); water channel Identical to Probable aquaporin PIP1.5 (Plasma membrane intrinsic protein 1d) (PIP1d) (PIP1.5) [Arabidopsis Thaliana] (GB:Q8LAA6;GB:O81736); similar to TMP-C (plasma membrane intrinsic protein 1,4), water channel [Arabidopsis thaliana] (TAIR:AT4G00430.1); similar to PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1,3), water channel [Arabidopsis thaliana] (TAIR:AT1G01620.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.0587843738618226 0.68700138583176 0.506459681132521 1 -0.376520179276563 22.6543991923431 0.0587843738618226 0.0453354626066667
AT2G15360_at 0.867892502294981 1.22199389702336 0.918300279345522 1.22625933218754 1.06239548083021 0.971076434788237 1.15125431377873 0.850422350311016 1.27570307977821 1.26744143278141 1.44164427793323 0.777876819326236 1.14570319404657 1.01467145162396 1.19220521890083 1.17798308916463 0.901619182785672 0.89522573816211 1.14059930674396 0.158185676104992 0.157658594575590 0.159056491384244 0.158294890841890 0.153596210557796 0.153596210557796 0.154991544332773 0.157975182828376 0.162904071537654 0.16165722726038 0.155786248645755 0.160439295646563 0.161474775078449 0.15693155556287 0.154510594326271 0.156630217730140 0.154913935526694 0.163176531556327 0.165036701908463 2 2 - 6701870 6702054 6701945.273 6701869 6702262 - gene protein_coding_gene FALSE TRUE AT2G15360.1 galactoside 2-alpha-L-fucosyltransferase similar to FUT4 (fucosyltransferase 4), fucosyltransferase [Arabidopsis thaliana] (TAIR:AT2G15390.2); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) -0.0689656845028818 -0.686958017608767 0.506485960035005 1 -0.376549009205697 2.18183968778367 -0.0689656845028818 0.097751472781458
AT3G44460_at 1.54098969112559 1.41494316288346 1.76438873243746 1.60397327955921 1.15485117207069 1.49575894915151 1.44908291270257 1.44747677983592 1.52175525182577 1.44052397400756 1.58043886477365 1.32563829094455 1.37801176711867 1.25305083429531 1.33701856055774 1.17788997426458 1.28869880198345 1.24918873313047 1.50926428252685 0.192908160235516 0.194517196165025 0.199753611373691 0.199358639582195 0.189247897586114 0.192365310960166 0.197911472371032 0.193040559878866 0.193851162807757 0.193076117064503 0.191584245651306 0.193676102212297 0.205646573028199 0.191627757690906 0.191844775856810 0.191517444314519 0.197774852998939 0.20201283061513 0.19825741491221 3 3|0 -|/ 16091107 16092288 16092026.5 16090969 16092893 - gene protein_coding_gene FALSE TRUE AT3G44460.1 DPBF2 (BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR 67); DNA binding / transcription factor basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons. similar to ABI5 (ABA INSENSITIVE 5), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT2G36270.1); similar to putative ABA response element binding factor [Oryza sativa (japonica cultivar-group)] (GB:BAB90559.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.0625763138676705 -0.686707431934342 0.506637818050747 1 -0.376715558795221 2.89106132555594 -0.0625763138676705 0.0687533649710872
AT2G37090_at 2.11228089236567 2.55656958913287 2.86961877475766 2.70858581941415 2.24926048467440 2.38284943038156 2.57244280587032 2.89948073639414 2.90414970056815 2.82564745424571 3.09563479004759 2.73994175963514 2.39618352118027 3.16571002894496 3.10749443196103 3.00973512869313 3.82823702323843 2.62054159074462 2.88866786496818 0.189291642117428 0.188567793450385 0.193946532430677 0.19557172140604 0.198133265291645 0.191913210086141 0.203664515517103 0.198059165210994 0.193998404696674 0.195191982518534 0.187937021620722 0.190515067506619 0.193292482731117 0.193813647127595 0.190896137761987 0.191694075250764 0.199684920076103 0.194564710954545 0.193672668570329 2 2 - 15594770 15595798 15595372.364 15594473 15596336 - gene protein_coding_gene FALSE TRUE AT2G37090.1 IRX9 (IRREGULAR XYLEM 9); transferase, transferring glycosyl groups The IRX9 gene encodes a putative family 43 glycosyl transferase. It was coordinately expressed with the cellulose synthase subunits during secondary cell wall formation. Cell wall analysis revealed a decrease in the abundance of xylan in the irx9 mutant, indicating that IRX9 is required for xylan synthesis. Mutants have irregular xylem phenotype suggesting a role in secondary cell wall biosynthesis. similar to glycosyl transferase family 43 protein [Arabidopsis thaliana] (TAIR:AT1G27600.2); similar to secondary cell wall-related glycosyltransferase family 43 [Populus tremula x Populus tremuloides] (GB:AAX33319.1); contains InterPro domain Glycosyl transferase, family 43; (InterPro:IPR005027) 0.0699991162055821 0.686442903021178 0.506798155516904 1 -0.376891315595809 5.47801429540701 0.0699991162055821 0.102105752747911
AT1G62010_at 1.70586798997165 2.0635822985524 1.86219707919093 1.66336277754037 2.00777271120446 1.95822332941263 1.99183918723291 2.05309224583829 1.65799001980457 1.27723161298031 1.25887710897752 1.58418232353403 1.63704244219048 1.47159581615443 1.60985526839155 1.71061707621637 1.75722196240525 1.38700482794967 1.85803600993336 0.228749520425209 0.234500896158915 0.229982847685819 0.238440167578488 0.230386202710107 0.228382652153960 0.228382652153960 0.230920778075478 0.237627315762985 0.241144644686129 0.228382652153960 0.228597938586994 0.233896196318161 0.234586929499335 0.238593034969106 0.229220875061222 0.235215455333278 0.233810589049316 0.233555404723467 1 1 + 22920210 22920734 22920445 22919410 22920995 + gene protein_coding_gene FALSE TRUE AT1G62010.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT1G62120.1); similar to mitochondrial transcription termination factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38193.1); similar to Os05g0413000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055544.1); similar to Os07g0423000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059486.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.0632047002035243 -0.6864240154114 0.506809604926384 1 -0.37690386243552 3.48814327776803 -0.0632047002035243 0.0721249164456201
AT3G62140_at 6.13998605471564 5.38236800372802 6.41492447782711 6.29222494160305 6.61089051511525 6.07335934768076 6.19034801609356 5.94118703705927 6.28598793714794 5.97962926199445 6.07413794582916 6.17601514848056 5.72992767593831 5.80025842443264 5.86188062996091 5.89464995706727 6.01606847683336 5.95982271257538 6.31924544475749 0.225698576449520 0.220026339661408 0.213661274959221 0.219557797583913 0.222312369322993 0.227929287568611 0.216830843057494 0.22638466625036 0.221821216379014 0.20895302729816 0.209384070838266 0.210481958289663 0.214351623025676 0.212355592947882 0.20962344515986 0.20895302729816 0.246100937148185 0.209769136198977 0.22142588864781 3 3|0 +|/ 23018799 23019547 23019303.375 23018058 23019724 + gene protein_coding_gene FALSE TRUE AT3G62140.1 similar to Os01g0321800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042892.1); similar to hypothetical protein LOC334752 [Danio rerio] (GB:NP_956218.1); contains domain SUBFAMILY NOT NAMED (PTHR13495:SF3); contains domain FAMILY NOT NAMED (PTHR13495) 0.0892592247069142 0.686297920324576 0.506886046015735 1 -0.376987618013617 12.1976857172393 0.0892592247069142 0.167788186656601
AT4G30580_at 8.94904780634843 8.87380825443073 8.91933472744674 8.43199026051707 9.42303401448276 8.9559690019802 9.3078000915477 8.98847962644995 9.06872627733634 9.16548051091647 9.10226501820172 9.29737161432471 8.91420971875323 9.20564642787374 9.43198289717613 9.22627743535498 8.77336922175498 8.77013498997396 9.20982788583491 0.107578163099036 0.108645672714647 0.107556546561364 0.105919272460120 0.105815076429253 0.117988615123133 0.107225255074198 0.112474396469586 0.112726839180019 0.104084990311002 0.107428298903108 0.111584190263041 0.109508705580611 0.112210391605038 0.104604334579934 0.108260353659910 0.117349251680907 0.116181781774703 0.104084990311002 4 4 - 14932554 14933252 14932994.909 14932340 14934534 - gene protein_coding_gene FALSE TRUE AT4G30580.1 ATS2 (EMBRYO DEFECTIVE 1995); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal. Identical to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1) (LPAT1) [Arabidopsis Thaliana] (GB:Q8GXU8;GB:Q9M0A2); similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G05510.2); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (GB:Q9LLY4); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain 1-acyl-sn-glycerol-3-phosphate acyltransferase; (InterPro:IPR004552) -0.0775281680950346 -0.686135019576394 0.506984809603055 1 -0.377095800105005 18.1002673346284 -0.0775281680950346 0.129881059440884
AT1G75790_at 0.818151770585708 0.733935284470285 0.818373460529494 0.775660014758055 0.952432944757327 0.575490583424164 0.77239109436854 0.939918590251987 0.75387061360948 1.47356031324862 1.10136039548086 0.914965349000385 1.11072576343704 0.7057310537033 1.10149748065021 0.693171265000354 0.904941167196472 0.531839846417447 0.695190183261354 0.188730384399107 0.190455648291772 0.189795223612928 0.186931055304994 0.195089447048974 0.189742465799464 0.195528411423375 0.193559798310111 0.187746129951520 0.200946918394723 0.186931055304994 0.190326822465620 0.198489062363228 0.189119135452973 0.192261282359603 0.191898111265001 0.189117901954329 0.190784100482936 0.189115908286950 1 1|0 -|/ 28458643 28459335 28459080.2 28458442 28461189 - gene protein_coding_gene FALSE TRUE AT1G75790.1 SKS18 (SKU5 Similar 18); copper ion binding / pectinesterase similar to SKS4 (SKU5 Similar 4), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G22010.1); similar to H0211B05.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67167.1); similar to Os04g0561900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053555.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.0633939653237977 -0.686093321460164 0.507010092225488 1 -0.377123487988378 1.72691225630182 -0.0633939653237977 0.0732305221049023
AT2G38680_at 4.54925145568659 4.76714626019968 4.59711678191902 4.80969761898881 4.80880532105786 5.11441591950785 4.82888558582629 4.92002624371562 5.2017286322257 4.67454697316878 5.35292857639853 4.62538948632779 4.29596442292 4.66781975579881 4.82518990874192 5.07834480370712 4.50119561939821 4.66811608574184 4.96172547437628 0.197164698460779 0.194351517211885 0.198759898394586 0.194281868647504 0.191714654352649 0.202922794003186 0.192661174300579 0.200987223534161 0.191714654352649 0.196424487234964 0.191714654352649 0.197969862944483 0.19452796792848 0.192939566994625 0.207072722404194 0.191714654352649 0.197874867723407 0.194908734079816 0.198681380826431 2 2 - 16181539 16182359 16181999.909 16181536 16182951 - gene protein_coding_gene FALSE TRUE AT2G38680.1 pyrimidine 5'-nucleotidase family protein / uridine monophosphate hydrolase-1 (UMPH-1) family protein similar to Os03g0648900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050781.1); similar to pyrimidine 5'-nucleotidase -related [Oryza sativa (japonica cultivar-group)] (GB:AAU89200.1); contains InterPro domain HAD-superfamily subfamily IE hydrolase; (InterPro:IPR006434) -0.0639751267664833 -0.68564999988181 0.507278936115898 1 -0.37741776229704 9.64835261951414 -0.0639751267664833 0.0762959557308335
AT3G07170_at 7.31442152746067 7.07485241279966 7.23912535424727 6.97680102472632 7.33117599615637 6.77258441181207 7.5137388778046 7.72926550930262 6.6264260437873 6.47293445451866 6.36500445131226 7.04390713899509 6.77099056444105 6.80558665993464 6.95521558644681 6.74133535486443 6.72452733417487 6.79968080002801 6.69231465544482 0.16791056157347 0.167757306322610 0.166201012896734 0.171127699384548 0.164303082602400 0.176007470962127 0.17913577043231 0.170324607085908 0.174513842566935 0.164150461830208 0.167551358136531 0.164922481270723 0.171144319094588 0.162980936853912 0.163567152690582 0.164051086497825 0.172538876054635 0.161546080616189 0.167494765804330 3 3|0 +|/ 2280484 2281850 2281129.778 2280200 2282345 + gene protein_coding_gene FALSE TRUE AT3G07170.1 sterile alpha motif (SAM) domain-containing protein similar to sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48680.1); similar to hypothetical protein LOC449657 [Danio rerio] (GB:NP_001005928.1); similar to OSIGBa0135C09.6 [Oryza sativa (indica cultivar-group)] (GB:CAH66355.1); similar to Os04g0378200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052587.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.0747959750409952 -0.685594887783648 0.507312363772497 1 -0.377454333281682 13.9304986580511 -0.0747959750409952 0.120479322306811
AT1G12150_at 2.84827309966374 2.65332662464372 3.19504957965814 2.90044094864284 2.63981711670574 2.89837021946221 2.61159846592496 2.58271600154649 3.08465122956595 3.06509524001482 3.16298342390852 2.55592747989202 3.14976301769801 2.84347157595656 2.85741352710345 2.70445984983313 3.02621531753034 2.9370930385029 2.88446780985562 0.167208696302314 0.169017043907562 0.173564462254801 0.169383605967032 0.172496673583343 0.168003350716689 0.168788573502052 0.170577117975666 0.173907761017794 0.168093225767773 0.179621571938930 0.176616896532772 0.177656828095561 0.176123838369234 0.170514401584565 0.175139798170723 0.169604159331044 0.167306410940816 0.174782429289652 1 1 - 4123552 4123952 4123730.818 4123528 4125326 - gene protein_coding_gene FALSE TRUE AT1G12150.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G17210.1); similar to Prefoldin [Medicago truncatula] (GB:ABD28587.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.0638510310817444 0.685139648244714 0.507588535028553 1 -0.37775631622107 5.7492343388386 0.0638510310817444 0.0759239303509874
AT1G56230_at 6.53672681766177 6.8383998298724 6.41262676063484 6.77396791191201 7.79676374601276 7.32111135637625 7.32056946404323 7.43215279259716 5.81067148149529 7.09379470298636 7.35306715089157 7.22031231969499 6.8456910781042 7.19499769913891 6.2140455255626 6.64123436690583 6.58510835186949 6.4987789749523 7.24208216586124 0.222463580229747 0.218383158299236 0.238298925986133 0.218383158299236 0.236765838665203 0.236679855513277 0.235935176477039 0.218383158299236 0.237020622029830 0.228666920264317 0.22965837313642 0.222894051444439 0.220541715973656 0.233829932449230 0.22949143265453 0.225474753805195 0.226207793321582 0.229802432876741 0.226291535268335 1 1|0 -|/ 21049841 21050414 21050104.9 21049674 21052708 - gene protein_coding_gene FALSE TRUE AT1G56230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22660.2); similar to Os01g0347100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042967.1); similar to hypothetical protein [Oryza sativa] (GB:AAD27671.1); contains InterPro domain Protein of unknown function DUF1399; (InterPro:IPR009836) 0.0738967671496773 0.685132598558813 0.507592812432569 1 -0.377760991190152 13.8213751099743 0.0738967671496773 0.117405833189831
AT4G18640_at 1.19024131483567 1.81757631176230 1.40313099430316 1.0805905330562 1.04094298311685 1.67035310615691 1.8206804486151 1.71289447071250 2.33890663379451 1.93184735355867 2.38380162395287 2.63304306900248 2.08534737514605 2.41995646348484 3.38689010510123 2.28091663530253 2.32934194113744 2.29828926772708 2.67955181435384 0.229786725999959 0.22490701660046 0.233301682057256 0.226222881337332 0.233653615150783 0.240850272651253 0.233176832822845 0.231135434731932 0.229315100988871 0.233536957615783 0.223254579592892 0.234719746587533 0.231910568624892 0.232615091957359 0.229943790705142 0.225067140883379 0.224820931005561 0.233564588011915 0.229720233301207 4 4|0 +|/ 10262756 10263562 10263086.8 10259691 10263775 + gene protein_coding_gene FALSE TRUE AT4G18640.1 MRH1 (morphogenesis of root hair 1); ATP binding / protein serine/threonine kinase Required for root hair elongation during tip growth. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G45840.1); similar to transmembrane kinase [Oryza sativa (japonica cultivar-group)] (GB:AAQ01158.1); similar to Os01g0206800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042346.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0880820113926526 -0.685027125759612 0.507656810741721 1 -0.377830929793437 3.86403472565775 -0.0880820113926526 0.164661896148314
AT1G11080_at 1.92015004999458 1.61727025772022 1.59703104109147 1.64480905555642 1.16980689275761 1.70658663258019 1.0241563455891 1.72215317657101 2.10654653307401 1.78848636520375 2.06287102656471 1.30906694834011 1.71726642534203 1.70285538592024 1.66594381237989 1.49880294029464 1.50252231078242 1.99298583211328 1.54753220491342 0.231265527778881 0.236634539353061 0.231745728888381 0.243971989340987 0.236429137441098 0.252195120079159 0.244355434282145 0.239259245732329 0.246953168432722 0.236976120245842 0.231508529851015 0.234572348803023 0.236966107791656 0.237969283524934 0.237229739568059 0.231894380275624 0.240338065926894 0.244089633908217 0.233920929669041 1 1 - 3694991 3696092 3695567.222 3694707 3698013 - gene protein_coding_gene FALSE TRUE AT1G11080.1 SCPL31 (serine carboxypeptidase-like 31); serine carboxypeptidase similar to SCPL30 (serine carboxypeptidase-like 30), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT4G15100.1); similar to serine carboxypeptidase S10 family protein [Arabidopsis thaliana] (TAIR:AT1G61130.1); similar to Os01g0332500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042932.1); similar to Os05g0158500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054710.1); similar to serine carboxypeptidase (carboxypeptidase D), putative [Musa acuminata] (GB:ABF70080.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.0870115422427672 -0.684962806776428 0.507695840300001 1 -0.377873574645973 3.29810928295635 -0.0870115422427672 0.161354425024220
AT1G05790_at 6.97116720821462 7.12592984761151 7.19616440741608 6.89582501449798 7.90491380557373 7.18003850356782 7.27697062301211 6.58384663784473 6.6816135252066 6.70027003990225 6.5756059251672 6.83529106629149 6.66421710058151 6.44112027449257 5.98171902327222 6.86550565821295 7.00806665124779 6.02696254603338 6.61692942578037 0.194089085721205 0.192864882333409 0.201812106235714 0.205586862995731 0.194482772406453 0.190171316547482 0.197644334675267 0.204247649198792 0.220214790352973 0.197077078681561 0.191795715156894 0.191325174891986 0.199828216744984 0.198569208933467 0.204592929713667 0.191794715647372 0.20268775922949 0.203422512023727 0.195635905559456 1 1 + 1736544 1737161 1736812.2 1732870 1737488 + gene protein_coding_gene FALSE TRUE AT1G05790.1|AT1G05790.2 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G42450.1); similar to OJ991113_30.24 [Oryza sativa (japonica cultivar-group)] (GB:CAD41339.2); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.0941484436462379 0.68489192230158 0.507738855965133 1 -0.377920568333099 13.7498980197801 0.0941484436462379 0.183145500198424
AT3G26720_at 6.82648368638106 6.62104636977656 6.62511847793553 6.41750234628198 6.68030616706704 6.63056978475552 6.71298546441374 6.26198231299459 6.76814321752379 7.22864293245177 6.87558974010075 7.13146536168586 6.53842092239962 6.90060523625625 6.94669194591444 6.7957570968554 6.86206308420838 6.58063335371971 6.84416298772472 0.167815008121669 0.159657779188347 0.162024402057605 0.166671598142197 0.159657779188347 0.160035585236124 0.161887850963906 0.170640575631803 0.167343416943223 0.164042441390914 0.160012372899285 0.164910353056637 0.176643995839885 0.178525478542224 0.166099264616757 0.162719473731435 0.162631137750517 0.170878847331833 0.169833096555987 3 3|0 +|/ 9822727 9824195 9823545.444 9817818 9824423 + gene protein_coding_gene FALSE TRUE AT3G26720.1 glycosyl hydrolase family 38 protein similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G66150.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G13980.2); similar to Glycosyl hydrolases family 38 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22500.1); similar to Glycosyl hydrolases family 38 C-terminal domain, putative [Medicago truncatula] (GB:ABE88173.1); similar to glycosyl hydrolase family 38 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65906.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Glycosyl hydrolases 38, C-terminal; (InterPro:IPR011682); contains InterPro domain Glycoside hydrolase, family 38; (InterPro:IPR000602) -0.0676649838195056 -0.684505008573921 0.507973689932889 1 -0.378176999181018 13.4849425204721 -0.0676649838195056 0.093383237367534
AT3G58660_at 4.91711903192139 4.98230472395616 4.89664072043344 4.98610106059787 4.36564863961654 4.84120745028055 4.82958177587516 5.00798283792821 4.50958297883531 4.30514074646912 4.48767155438269 4.56425077347718 4.10810451886696 4.24786327802782 4.56047353827866 4.29641567333287 4.59291412207098 4.19359355336876 4.24512607369874 0.194371685598486 0.192771325930743 0.20120656773343 0.195401762855048 0.194613059503308 0.203267710758782 0.195661571533637 0.189196448685697 0.201454161546109 0.193279957086290 0.189196448685697 0.194342492535116 0.194303426907352 0.190770249235697 0.194596062323053 0.193170424850345 0.190992319809725 0.196990811104209 0.190633282191720 3 3 + 21713297 21713841 21713549.091 21712511 21714091 + gene protein_coding_gene FALSE TRUE AT3G58660.1 60S ribosomal protein-related similar to 60S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT2G42650.1); similar to 60S ribosomal protein-related (ISS) [Ostreococcus tauri] (GB:CAL54265.1); similar to Os05g0558000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056294.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.0668600072733928 -0.684488333373337 0.507983812266597 1 -0.378188047865008 9.22067035148123 -0.0668600072733928 0.089961039814892
AT2G20970_at 2.05630317771317 1.96580865974183 2.07048756453850 1.92042368728010 1.92274757753619 2.3265687905785 2.00209099385137 2.0170052947924 2.37144869321425 2.49552462141267 2.32911425323491 2.04450570240285 2.04654891561052 2.41160351274638 2.16156732411233 1.93713977386284 2.49500058903321 2.7444615896055 2.47906032231024 0.173824458841311 0.178668963941921 0.172832629138313 0.177959599161022 0.178644367689655 0.175544731065355 0.177435214908826 0.177900093175696 0.179304338519099 0.176270060934076 0.170714838423867 0.174529069498931 0.173868914640273 0.177318671468882 0.183821284786719 0.170714838423867 0.173909290411440 0.171467904457755 0.173170972508834 2 2 + 9017603 9018119 9017903.818 9016948 9018148 + gene protein_coding_gene FALSE TRUE AT2G20970.1 lipid binding similar to hypothetical protein PF11_0207 [Plasmodium falciparum 3D7] (GB:NP_701067.1); contains InterPro domain Apolipoprotein/apolipophorin; (InterPro:IPR013326); contains InterPro domain Apolipoprotein A1/A4/E; (InterPro:IPR000074) -0.0638401489721773 -0.684363840822782 0.508059386702259 1 -0.378270526609232 4.39513976153157 -0.0638401489721773 0.0762231507619173
AT1G14490_at 1.55493984956223 1.89719212442827 2.36859959553093 2.08100347291228 2.21670068633591 2.29656683521801 2.05267702587899 2.48057519820179 2.12660618361108 2.09272762884696 1.78364219804724 2.00861883698933 2.43168729017703 1.81044432021205 1.93220593603566 2.19461601199661 2.06922720270118 2.07629161708285 2.20122973741661 0.204230821151849 0.206627914163522 0.205694246904005 0.208980142512394 0.204131567270177 0.20541594519336 0.206236650483791 0.212919810433180 0.202563559091275 0.210632168217462 0.203726553240134 0.206076500939844 0.206636881799676 0.212289527102096 0.205979091470013 0.202546620082395 0.211049534680235 0.204915065917079 0.207261492267344 1 1 - 4958726 4959239 4958940.909 4958509 4959320 - gene protein_coding_gene FALSE TRUE AT1G14490.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G49700.1); similar to Os02g0820800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048546.1); similar to DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33958.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.0712627123392453 0.684074380030248 0.508235132799377 1 -0.378462247184425 4.20779661181528 0.0712627123392453 0.107978843481692
AT1G33640_at 2.42174053558312 2.65044332000339 2.63594769631186 2.53912578510450 2.01519577885578 2.32007227282327 2.04130788542504 2.82223786039995 2.48872671496894 3.06175209966738 3.08208313078683 3.01658377575720 2.85748182341574 2.96705071815891 2.25235240845375 2.14256439583009 2.77211813323674 2.34169687286004 2.66980674673547 0.227113444063006 0.220839359575322 0.224009316287913 0.221297313133789 0.220273174145117 0.231930348925142 0.232856571870270 0.227714315587043 0.227204881081057 0.233980510215636 0.223028676377895 0.224121867267063 0.220303624130306 0.236472715229779 0.225777678683470 0.223380966163889 0.227243158987347 0.232922032728564 0.231748515798234 1 1|0 -|/ 12195705 12195926 12195770 12195702 12195950 - gene protein_coding_gene FALSE TRUE AT1G33640.1 unknown protein -0.0837253984452687 -0.68401739062792 0.508269738203519 1 -0.378499984661954 5.14030218903154 -0.0837253984452687 0.151309635346661
AT1G03620_at 1.36549059502511 1.69595353909639 1.2822765728876 1.11780377872353 1.66079628652126 1.59253092476732 1.44934783434053 1.29264622099159 1.47178917569542 1.25656093374534 1.77225936229638 1.65840629755829 1.53806881414005 2.12579887232577 1.47131530956164 2.03654796778403 1.73353496363603 1.49942451744767 1.97151836078245 0.250469897920652 0.24278311325115 0.244539155211522 0.247946934045647 0.242987299016983 0.247049290380413 0.250272909991155 0.242735913304363 0.252190911174042 0.242735913304363 0.249549339085332 0.243502203775763 0.252511641387852 0.242975336032023 0.24465360582624 0.248939673669548 0.244851066713176 0.250529193231442 0.246237104278422 1 1 - 904319 905510 905008.455 904318 906012 - gene protein_coding_gene FALSE TRUE AT1G03620.1 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT3G03610.1); similar to B1160F02.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE75985.1); similar to Os04g0101700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051992.1); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) 0.0626445165237602 0.684004471610123 0.508277583153709 1 -0.378508539032069 3.0801268872949 0.0626445165237602 0.0703957386120461
AT1G72650_at 6.93166347279272 7.02883609413548 7.24361125723068 7.21512449089072 8.28198703362624 7.35130108730064 7.37022996087589 6.87475897873053 7.27629046892699 7.14232681506724 6.99955727987038 7.42384812958884 6.98458506684367 7.2441956586872 6.60682306147372 7.74197955961211 6.73559904042121 6.61205085898062 7.56270734042758 0.202144474249627 0.197241935623713 0.193623510893969 0.196718559198009 0.197001702827836 0.208230227978245 0.193459647300761 0.197091335216148 0.202657379663275 0.197736582204975 0.192873220364293 0.192617467170847 0.197420856606438 0.192965285989652 0.190628147611550 0.190636426758409 0.202624675661840 0.211269551830355 0.193810434593041 1 1|0 +|/ 27356255 27357074 27356616.2 27353129 27357402 + gene protein_coding_gene FALSE TRUE AT1G72650.1|AT1G72650.2 TRFL6 (TRF-LIKE 6); DNA binding / transcription factor Arabidopsis thaliana myb family transcription factor (At1g72650) similar to TRFL3 (TRF-LIKE 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G17460.1); similar to Os02g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048286.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16962.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to TRFL3 (TRF-LIKE 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G17460.1); similar to Os02g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048286.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16962.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.094052732211268 0.683816983870424 0.508391441462117 1 -0.378632668080866 14.4725330669855 0.094052732211268 0.183300904912713
AT3G63510_at 3.7691711918421 3.56528899612305 2.93922368719933 3.28856780831521 3.14828591594832 3.47473389152214 3.89780675787094 3.43510462182192 3.91596413942849 4.50440918941246 4.31615670655595 4.81241001773334 4.7478321635638 4.31548241168865 5.54023876181915 4.65131774718916 3.88714022756149 4.63861446912824 4.50542289465443 0.196796817229096 0.193128242034704 0.197775112754375 0.206297561319276 0.195218593822687 0.200705522027024 0.203712924830571 0.197743203650079 0.194835551616775 0.203147711341478 0.196213166552439 0.193532149905683 0.193128242034704 0.201401862966190 0.203420670839481 0.199115008161313 0.197884949355970 0.197569355234352 0.200616431480396 3 3|0 +|/ 23462566 23463594 23463011.5 23461511 23463769 + gene protein_coding_gene FALSE TRUE AT3G63510.1|AT3G63510.2 FAD binding / oxidoreductase similar to FAD binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G47970.2); similar to Os04g0278900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052360.1); similar to tRNA-dihydrouridine synthase (ISS) [Ostreococcus tauri] (GB:CAL55090.1); similar to OSIGBa0113C11.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66291.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009) -0.0745448720892056 -0.683423744712424 0.508630298961333 1 -0.378892917174526 7.90089676099042 -0.0745448720892056 0.120427994778489
AT1G67440_at 5.86317594542851 6.09343213294482 5.80999382665726 6.02127608923677 6.4932096274829 5.57797182242323 6.86043704337363 6.75820266869767 6.31620394713056 6.4985903503197 6.84202874927726 7.38641191188694 6.23574603008139 6.93918045788592 6.33895268233353 7.19154098363039 6.50614544930985 6.03311211329001 6.51712793331335 0.204628459858392 0.201328641341874 0.210567682378315 0.205441895531751 0.201328641341874 0.228520146223354 0.206495873027402 0.206102476151708 0.222344619818297 0.208205052832981 0.201328641341874 0.201328641341874 0.221484291015733 0.205143623272406 0.20437148112315 0.203354021086628 0.20812496715472 0.222181400873928 0.204971706474652 1 1 - 25267596 25268224 25267979.273 25267467 25269382 - gene protein_coding_gene FALSE TRUE AT1G67440.1 EMB1688 (EMBRYO DEFECTIVE 1688); GTP binding / GTPase similar to GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G67460.1); similar to OSIGBa0092E09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66376.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56008.1); similar to OSJNBa0072D21.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD40742.2); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain GTPase EngC; (InterPro:IPR004881); contains InterPro domain EngC GTPase; (InterPro:IPR010914) -0.089016692935203 -0.683165126833124 0.5087874227548 1 -0.379063998356365 12.7487693315972 -0.089016692935203 0.168296902945639
AT3G63520_at 11.2902458266224 11.1656963844579 11.4142744552959 11.3662513741237 11.6375762282108 11.1888284425396 11.8219696877959 11.5232580724603 11.4383237698485 11.6674670675561 11.6185086374716 11.2755476246680 11.3855433848640 11.5313604881819 11.3081914395116 11.7139216174372 11.6353874071646 11.3922150589629 11.6052267170191 0.0887250333687924 0.086517211052226 0.0884259331345772 0.0872444369824981 0.0855623553816467 0.0945905025559418 0.0870958890223483 0.0880674933158727 0.0973111154669334 0.086376476672375 0.088313368206595 0.0855623553816467 0.0875757778224152 0.08655924391757 0.0898624859504153 0.0871557177498764 0.0937847155298224 0.0964305286582655 0.0855623553816467 3 3 + 23465938 23466735 23466310.727 23463886 23467053 + gene protein_coding_gene FALSE TRUE AT3G63520.1 CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1) Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds. similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to carotenoid cleavage dioxygenase 1 [Coffea canephora] (GB:ABA43900.1); similar to 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera] (GB:AAX48772.1); similar to carotenoid cleavage dioxygenase [Cucumis melo] (GB:ABB82946.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) -0.0681572976583942 -0.68288707102313 0.50895638852751 1 -0.379247872292209 22.9524743799836 -0.0681572976583942 0.0961072103407936
AT4G05040_at 4.86428782045608 4.34862982585831 5.08636419996225 4.5520767654095 4.80415326894323 4.52465610283771 4.59537986642492 4.29978833191545 4.53006089679895 4.99002840059878 4.98983951853565 5.18228702107413 4.81179420016482 4.5226744671642 5.02036288465303 5.01993632235713 4.61782600113061 4.46832556326293 5.11906823129826 0.233607192744342 0.234229447713466 0.228273005948795 0.226523353032276 0.228398084423496 0.23407367990907 0.233042870711311 0.226351075585373 0.247619409919113 0.230795697141117 0.226351075585373 0.227597379636508 0.227948287863000 0.235746758703031 0.227463265602273 0.230250631103042 0.231525133228777 0.239165361446723 0.229287003061837 4 4 + 2581222 2581681 2581464 2578644 2581796 + gene protein_coding_gene FALSE TRUE AT4G05040.1|AT4G05040.2|AT4G05040.3 ankyrin repeat family protein|protein binding similar to ACD6 (ACCELERATED CELL DEATH 6), protein binding [Arabidopsis thaliana] (TAIR:AT4G14400.1); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14390.1); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90661.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0821013470926532 0.682802135371375 0.509008007951135 1 -0.379304025297860 9.48884198448833 0.0821013470926532 0.146521128572336
AT1G44090_at 2.18159494217642 1.54236676834903 1.98515688540376 1.74572398374291 1.89810088021006 2.01129271105152 1.82872109087451 2.07576885752961 2.60480910788465 2.33964053596107 2.24857612641790 1.78131487643649 2.68434868083550 2.13949499110854 2.60656506677338 2.33447697448518 2.45818512690167 2.59704287669592 2.59105201781351 0.191452284210294 0.189800628002973 0.19471616176495 0.19341195225634 0.189800628002973 0.194331021529741 0.194987182760653 0.193140032695336 0.199140497141787 0.205244713051458 0.193839292182381 0.196530608865088 0.190047674339684 0.196468556169700 0.191324932606534 0.198290425999215 0.192936233796399 0.191568733134414 0.191749970357550 1 1|0 -|/ 16763167 16763832 16763502.2 16763117 16764926 - gene protein_coding_gene FALSE TRUE AT1G44090.1 ATGA20OX5 (GIBBERELLIN 20-OXIDASE 5); iron ion binding / isopenicillin-N synthase Encodes a gibberellin 20-oxidase. similar to YAP169 (Gibberellin 20 oxidase 3), gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT5G07200.1); similar to GA 20-oxidase [Sesbania rostrata] (GB:AAY98356.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0763137984466236 -0.682334965322234 0.509291985376238 1 -0.379612768837301 4.34263300350551 -0.0763137984466236 0.127143458439465
AT1G61590_at 0.907499803279601 0.730485587562436 0.90099943282202 0.886555637757693 0.619420165347294 1.26637425541522 1.25965979096399 0.894575684892192 1.31278560302959 0.912468057729296 0.987212097149402 1.09377704909921 1.07314296646167 1.41647654209775 1.28909985373296 1.10632985436141 1.21544075645043 1.13306082074584 0.712004576145889 0.212040749987821 0.210247234060603 0.207645076361809 0.218802020349183 0.208656842567346 0.207691886346703 0.206734151967827 0.206734151967827 0.221212833345021 0.214030472801884 0.208650883065649 0.210575278005484 0.206734151967827 0.213880054433271 0.208274047840672 0.208098693676031 0.206734151967827 0.209665034412503 0.217630371881623 1 1 - 22727358 22728205 22727622.818 22727166 22729739 - gene protein_coding_gene FALSE TRUE AT1G61590.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G05940.1); similar to Os03g0364400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050171.1); similar to Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum] (GB:AAP03880.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0777567848525371 0.682271794797919 0.509330391953014 1 -0.379654502212955 2.00489808049535 0.0777567848525371 0.132177817137996
AT3G61840_at 1.42162767442490 1.15016891779562 1.06731751881238 1.13669421708690 1.04215482705116 0.815260553451749 0.927302511381954 0.96480071847146 0.810053481646984 0.941404707730333 0.651027243279419 1.21648516731290 1.03218865610745 0.84284252493307 1.29245580995690 1.01703151823678 1.49012626430747 1.09397587469880 0.81889516951958 0.185629363493200 0.184227397248712 0.190851364607185 0.183361772051693 0.183560774196524 0.189938831425976 0.183920073776128 0.183661070205944 0.201033498837518 0.188801279050633 0.186688075204490 0.183361772051693 0.193137778695690 0.184411689864169 0.197007501948693 0.185928257788568 0.185030560451348 0.195451131901138 0.185836773919516 3 3 + 22903601 22903914 22903762.818 22903456 22904244 + gene protein_coding_gene FALSE TRUE AT3G61840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46535.1) 0.0610570014852646 0.682101727735211 0.509433798374791 1 -0.379766838885873 2.03381640996938 0.0610570014852646 0.062728462896497
AT1G60010_at 10.1399906126399 10.3204677143054 10.1177055359713 10.1514280695506 10.8172951546633 10.4622483941916 10.4184441251817 10.4974175609151 10.3746222333942 10.0554944458822 10.4492016919762 10.4506469921358 10.3771307178663 10.4847972462172 10.2687747799629 10.5026360420039 9.80465624363577 10.0275714565468 10.2113257905018 0.105768505077544 0.105768505077544 0.111039623736190 0.105768505077544 0.113489199597375 0.113148319589012 0.116449582910493 0.105768505077544 0.119116052308437 0.112389043331474 0.111116739865464 0.106515082491138 0.107137749252710 0.113740010214005 0.112449393395841 0.107629117825484 0.127607034554859 0.115852364123079 0.112440919751417 1 1|0 -|/ 22099326 22100064 22099834.5 22099025 22100242 - gene protein_coding_gene FALSE TRUE AT1G60010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10530.1); similar to T10O24.15, related [Lycopersicon esculentum] (GB:AAX95759.1) 0.0624760125170207 0.681926751978687 0.509540202556038 1 -0.379882391311976 20.6203701723703 0.0624760125170207 0.0705087223189244
AT3G49240_at 3.51421656953721 3.33636210689421 3.23303405810395 3.19890268559987 3.11601362936764 3.46747604760822 3.58713078956963 3.3100848170575 3.16302927823246 3.33283333202017 2.95486491630304 3.45974949968720 2.90868409601014 3.25550296038372 3.60254424976774 3.25772554092714 3.65285898055162 3.68466277333826 3.38647557044854 0.165407224632657 0.166986826348325 0.167543944006721 0.167591986776181 0.161974114057877 0.164495516621913 0.170615383661079 0.174326051997753 0.175252869500635 0.166770324400879 0.170805217959577 0.167244206864953 0.164130753550184 0.166782519074851 0.161974114057877 0.164264803862010 0.166898628836794 0.166742683750763 0.168314950647624 3 3 + 18268375 18268919 18268626.273 18266964 18269085 + gene protein_coding_gene FALSE TRUE AT3G49240.1 EMB1796 (EMBRYO DEFECTIVE 1796); binding similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE80818.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0650652826870007 -0.680870663098782 0.510182701041271 1 -0.380579248931303 6.66599601497803 -0.0650652826870007 0.0835474980628722
AT1G05100_at 2.28021239100622 1.87553603690296 2.16896873843154 2.13862515107433 1.95071004519478 2.34422899734745 2.14919962329040 2.43352101513759 2.24298255508142 2.22307033309145 1.96071872711001 2.27721140262305 2.26347099485775 2.19636465058077 2.14820354982069 2.26629971352927 2.06853986259852 1.98331257287643 2.29639403258166 0.185973859923958 0.182520832681381 0.193004444601294 0.187903223873831 0.181647158597915 0.182973072622175 0.178995624304594 0.180765353350001 0.183879116628210 0.184262663896431 0.178995624304594 0.183727255499818 0.184504741811590 0.182124386300234 0.188820910697369 0.183301689067107 0.181980763884956 0.183472166210617 0.178995624304594 1 1 + 1470171 1470670 1470364 1469609 1470880 + gene protein_coding_gene FALSE TRUE AT1G05100.1 MAPKKK18 (Mitogen-activated protein kinase kinase kinase 18); kinase member of MEKK subfamily similar to MAPKKK17 (Mitogen-activated protein kinase kinase kinase 17), kinase [Arabidopsis thaliana] (TAIR:AT2G32510.1); similar to Os02g0322400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046691.1); similar to protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15943.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.071308911453773 -0.680711154986457 0.51027978393274 1 -0.380684414334594 4.36745732871536 -0.071308911453773 0.109501287817491
AT3G06090_at 1.51220379312834 1.29267128765314 1.46734962376976 1.61342242897429 1.90361171849931 1.30574312897449 1.90168538025973 1.58139297836326 1.79851309146609 1.88572463696389 1.72960030766599 1.84056531845071 1.60906116525129 1.55370301188876 1.67846807935018 1.62704262750075 1.84660135508696 1.36900395170026 1.74219865076455 0.201053640046297 0.198721298592928 0.205611018208871 0.199657774918850 0.201198098245863 0.202817228841953 0.201772864211074 0.198721298592928 0.200394208816881 0.199353085047078 0.206834087689502 0.198721298592928 0.202855838793832 0.20961068712732 0.201201769729750 0.204289182601373 0.201040124168852 0.206764121579794 0.203503297234443 3 3 + 1840791 1840994 1840879.636 1840779 1841018 + gene protein_coding_gene FALSE TRUE AT3G06090.1 unknown protein -0.0757565170414855 -0.68041922471747 0.510457492733735 1 -0.38087682886985 3.30504396920781 -0.0757565170414855 0.125934086719521
AT1G08280_at 2.52383649353432 2.11784194944902 2.16848957245400 2.14724831456465 2.51450511547871 2.42545224957465 3.07710093534788 3.12487519132756 2.85756756663932 2.66878842142777 3.12222972641212 3.83417207622734 3.25874238841408 2.98674779711979 4.03208449327126 3.58074258345107 3.17137896035832 2.99953638471497 3.02618123303008 0.223015395046824 0.218255232265565 0.219309193417104 0.231502949388132 0.220214640302503 0.222198430404792 0.220340081153428 0.226698879856522 0.224289809787707 0.223167520884095 0.221197613779869 0.218255232265565 0.221142106868794 0.221007619202545 0.228569342622401 0.223282107722236 0.219602711367873 0.219390129167475 0.224946463040756 1 1 + 2609115 2609531 2609284.364 2608405 2609850 + gene protein_coding_gene FALSE TRUE AT1G08280.1 glycosyl transferase family 29 protein / sialyltransferase family protein similar to sialyltransferase-like protein [Gossypium raimondii] (GB:CAJ15145.1); contains InterPro domain Glycosyl transferase, family 29; (InterPro:IPR001675) 0.0626843657418494 0.679981523073701 0.510724007261697 1 -0.381165181884304 5.62444374852227 0.0626843657418494 0.0724963875397559
AT4G04730_at 0.295942897491926 -0.0565283078846309 0.0272530623865099 0.634865440889281 0.310259404617362 0.529197013742896 0.197846231193950 0.269017674503243 0.521097031988445 0.269374005177348 0.380943205519491 0.00363082659531272 0.529818230009868 0.528937304691954 0.717126150409418 0.154382951635138 0.199421142036171 0.396198303153513 0.439831378933927 0.171857864974893 0.171148317388261 0.172417462519691 0.178226121216923 0.171745194882241 0.176754036662411 0.174002017673413 0.18260291588316 0.178945056836584 0.175590516790924 0.177444943133892 0.181259726842549 0.176551451013341 0.179631326782417 0.171486292866702 0.182561361920979 0.179844480493214 0.181282398116530 0.17534786686452 4 4 - 2402134 2402274 2402206.091 2401925 2402347 - gene protein_coding_gene FALSE TRUE AT4G04730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13510.1) 0.0762652827363376 0.679916747460175 0.510763455895475 1 -0.381207840964054 0.662935711929033 0.0762652827363376 0.127923314307382
AT3G06830_at 1.95640317822753 1.46018291537752 1.75829738525952 1.7548969386196 1.66340470035601 1.65937558843076 1.48771576842211 1.91790932916914 2.07962778040256 1.80775341891608 1.94689144857755 1.54081470000373 1.73081846038369 1.98597555782528 1.75281179957612 1.57651979065214 1.53501072623397 2.26094927260936 1.93041982938497 0.181306979892899 0.184243948347555 0.173657224274645 0.173520316339073 0.186825632488494 0.179645390713955 0.178618109316476 0.181902097108065 0.174803270115482 0.17669794598371 0.174941351143680 0.174581211438235 0.178027177106392 0.178350952000435 0.176780002121472 0.17736726601132 0.18013374632607 0.183241995122638 0.181334582094967 3 3 + 2155471 2156029 2155750.636 2153870 2156154 + gene protein_coding_gene FALSE TRUE AT3G06830.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G49180.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE80624.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.0723010923588711 -0.679711077113718 0.510888722103546 1 -0.381343264085121 3.57251871500807 -0.0723010923588711 0.113654741777422
AT4G11660_at 3.01854075072705 3.18341077859209 3.03008625263121 3.09293571424723 3.26442030203072 3.20021581312313 3.71490910174919 3.13334429748157 3.71424209969422 3.18386881396511 3.25802768796590 3.06485336573780 3.61203037128261 3.39011096805141 3.72634387894912 3.21445544622472 3.03606485273147 3.66851588348168 3.29011308550810 0.182364910955648 0.182486980821233 0.187284081355178 0.183160719701996 0.183475090994565 0.180198610545424 0.181431501621046 0.185743928261795 0.185059862007679 0.185486144549514 0.181257195444116 0.180412866810212 0.180198610545424 0.184006951629482 0.184807243515918 0.183371278568315 0.185218816703846 0.186050248536299 0.180198610545424 4 4 + 7043626 7044192 7043874.909 7042624 7044702 + gene protein_coding_gene FALSE TRUE AT4G11660.1 AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B); transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor B-2b (AtHsfB2b) (Heat shock factor protein 7) (HSF 7) (Heat shock transcription factor 7) (HSTF 7) (HSFB2B) [Arabidopsis Thaliana] (GB:Q9T0D3;GB:Q9SCW3); similar to AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62020.1); similar to putative heat shock factor [Oryza sativa (japonica cultivar-group)] (GB:BAD46358.1); similar to Os09g0526600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063726.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.0702055356077291 -0.67941106085594 0.511071483814965 1 -0.38154074199462 6.58842036291889 -0.0702055356077291 0.105757784103683
AT1G08550_at 10.8595229425259 10.8404472732714 10.7780909270493 10.6173437117992 11.0586217388443 10.8145931296773 10.9659422747866 10.7292268540075 10.8315319919896 10.8653349484611 11.1499600498932 10.8788675309268 11.0736065436905 11.1969670948090 10.7491393881408 10.7867402043089 11.0234746990866 10.9202361201813 10.7579011851585 0.0774842434568767 0.0752035497419706 0.0783425581380779 0.0771667966528672 0.0756153386468617 0.0808370283287757 0.0752035497419706 0.0782035094158454 0.0832861180184826 0.0769917725557699 0.0752035497419706 0.0752035497419706 0.0758099720909793 0.0785187806468056 0.0822656513700055 0.0752035497419706 0.0780003880709127 0.0775738053419992 0.0773647143082413 1 1 + 2708711 2709360 2708966.545 2706927 2709534 + gene protein_coding_gene FALSE TRUE AT1G08550.1|AT1G08550.2 NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1) Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex similar to violaxanthin de-epoxidase-related [Arabidopsis thaliana] (TAIR:AT2G21860.1); similar to violaxanthin deepoxidase [Chrysanthemum x morifolium] (GB:BAE79554.1); similar to violaxanthin de-epoxidase precursor (GB:AAC49373.1); similar to violaxanthin de-epoxidase [Coffea canephora] (GB:ABB70514.1); contains InterPro domain Calycin-like; (InterPro:IPR011038); contains InterPro domain Calycin; (InterPro:IPR012674); contains InterPro domain Violaxanthin de-epoxidase; (InterPro:IPR010788) 0.0612477263522755 0.679396676334508 0.511080247453081 1 -0.381550208233722 21.7282886043699 0.0612477263522755 0.065163227749668
AT3G25950_at 3.61744200639641 3.21846592068097 3.39025502806172 3.57374717920221 3.53149717657932 3.29489676074789 3.45599352175801 3.49458438766134 3.56752526698114 3.89626349196099 3.45058525813858 3.1291270485032 3.46030453159545 3.73849774746593 3.20227666788881 3.42783920400670 3.59450462017624 3.20287612523383 3.13487161255141 0.208712688977028 0.198982096901967 0.197292328362771 0.2053829508291 0.194095941812580 0.193819138849852 0.199498794170539 0.199317772821222 0.205496304893538 0.2025772775645 0.192127857158010 0.192127857158010 0.203659333052971 0.192127857158010 0.193300755755261 0.197352953175869 0.196377875572128 0.196759266390996 0.197208597282874 3 3 + 9497753 9498220 9498017.091 9497339 9498508 + gene protein_coding_gene FALSE TRUE AT3G25950.1 similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT5G14280.1); similar to TRAM, LAG1 and CLN8 homology [Medicago truncatula] (GB:ABE79828.1); similar to Os05g0302600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055138.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634) -0.0655789065490743 -0.679222251102228 0.511186521569614 1 -0.381664980324269 6.91392934307295 -0.0655789065490743 0.086582743261236
AT1G75620_at 0.823404600860696 1.39042740723993 1.04140602513704 1.14973699551903 0.682265015585846 1.19011984428833 0.930754327636629 1.09311344180064 1.11695530903249 1.40353929069140 1.66760879734524 1.6438816470291 1.60829897115726 1.52969727889795 1.38753133934341 1.38226412960417 1.32173456064625 1.20860500531391 1.28391264236232 0.240287946950489 0.239654692505731 0.24043744656871 0.247858321010131 0.240454585267188 0.240301303104371 0.248072059454072 0.237413403612206 0.238506884775325 0.245557659154038 0.237413403612206 0.237413403612206 0.241010529071075 0.237413403612206 0.237413403612206 0.237413403612206 0.243271774314593 0.239567077277182 0.244438169971018 1 1 - 28398668 28399176 28398908.818 28398440 28400257 - gene protein_coding_gene FALSE TRUE AT1G75620.1 glyoxal oxidase-related similar to glyoxal oxidase-related [Arabidopsis thaliana] (TAIR:AT1G19900.1); similar to Os03g0258900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049609.1); similar to glyoxal oxidase [Vitis pseudoreticulata] (GB:ABA42922.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Glyoxal oxidase, N-terminal; (InterPro:IPR009880) 0.0785119972765883 0.679139773766345 0.511236778100799 1 -0.381719241182952 2.40607268902313 0.0785119972765883 0.135991401358616
AT1G34355_at 0.46997597758109 0.314071594854114 0.368780799612958 0.556202058761654 0.368391807301927 0.179805090823452 0.698629647401713 0.428109207925476 0.351394342067930 0.547999404604997 0.483660571513597 0.699459571976654 0.620942797186326 0.688644934935278 1.01499746437577 0.787929501956124 0.427746169528522 1.00070799405590 0.545195004586179 0.158793187007185 0.157836457774769 0.159604639818062 0.163329029741764 0.159568177878305 0.159345747584326 0.162290785961024 0.159822758976209 0.161276501373728 0.155806553493161 0.176081490544306 0.160128836894356 0.164891687330962 0.175648982941454 0.163592989965178 0.159456123420713 0.166822353297589 0.162714349282033 0.175527004288892 1 1 + 12541034 12541675 12541356.182 12536475 12541869 + gene protein_coding_gene FALSE TRUE AT1G34355.1 forkhead-associated domain-containing protein / FHA domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34110.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX93017.1); similar to Os11g0171700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065865.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) 0.0622899370611929 0.67892804147141 0.511365808023355 1 -0.381858509809887 1.02151612775483 0.0622899370611929 0.0709691168807574
AT3G60360_at 3.88443164124659 3.70781321376308 3.94363590283934 3.78598064455757 3.39908364782703 3.52134746870373 3.7877289081994 3.55194662665491 3.23596653340513 3.37311711872414 3.41832820457369 3.32543220628824 3.49858605940175 2.89734178372579 3.74193837991641 3.25438676504747 3.26325267482925 3.19069138787945 3.51412426747822 0.216667137360684 0.221672874497493 0.215037292549677 0.214799127642368 0.219589781340246 0.214038189036436 0.215678436470687 0.222329813913792 0.222843763444031 0.214308052574466 0.214655964749783 0.213059323535874 0.211562726659312 0.213320986145422 0.217815679457566 0.21188097438066 0.217401876768294 0.217464485196751 0.218966870686485 3 3 - 22323464 22324766 22323959 22323233 22325375 - gene protein_coding_gene FALSE TRUE AT3G60360.1 EDA14/UTP11 (U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11, embryo sac development arrest 14) Identical to Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA- associated protein 11) [Arabidopsis Thaliana] (GB:Q9M223); similar to Os01g0810000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044580.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53433.1); contains InterPro domain Utp11; (InterPro:IPR007144) -0.06056306932274 -0.678825495260291 0.511428306795879 1 -0.381925946163491 7.04681966801242 -0.06056306932274 0.0615722014168083
AT1G53670_at 9.8940373975478 10.3235525853587 10.2715717523139 10.4645706351700 10.5810995216673 10.1709157026805 10.8902811398083 10.8745576928597 10.8621905139406 10.7060226429881 11.0170958556402 11.0495678361321 11.0447405471724 11.0993230098621 10.8607403474397 11.3042402905729 10.7489104393339 11.0102429449054 10.6875156701495 0.107967851354653 0.102083096838987 0.110798904580592 0.106411985893697 0.107506493922431 0.109695286246970 0.102004273292806 0.108203056941162 0.112266218368669 0.103214394704914 0.106695167867126 0.103755808511279 0.103104435059182 0.104205536055321 0.114225517046171 0.102925381821252 0.117837241256579 0.114116043262747 0.100643284236385 1 1|0 +|/ 20040510 20041451 20041198.778 20040309 20041887 + gene protein_coding_gene FALSE TRUE AT1G53670.1 transcription factor-related similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04830.1); similar to putative methionine sulfoxide reductase B [Oryza sativa (japonica cultivar-group)] (GB:BAD35399.1); similar to Os06g0472000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057620.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) 0.0706901244602813 0.678266204025007 0.511769257868106 1 -0.382293583166937 21.31820693738 0.0706901244602813 0.108104446036470
AT1G33760_at 0.875260575867576 0.570890092547634 0.477237715825979 0.941821201631734 0.805325652448563 0.782783439367874 0.86060494349958 0.730313268550577 1.27629056071610 0.92873052451008 1.30007686246811 0.906668441870635 0.8193636672149 1.12634377367879 1.43590644489671 1.04335730323891 1.30242549086127 1.44331074484061 0.879146469096746 0.210950952973159 0.215759183923883 0.216223553204392 0.210950952973159 0.210950952973159 0.210958608014275 0.217526034892799 0.213531429182437 0.214453207815703 0.216867890390190 0.227304045712310 0.220952261741095 0.237720611899143 0.217257648755528 0.232195189392439 0.216806607748745 0.214975510621395 0.221700611630462 0.215339080651787 1 1 + 12237949 12238338 12238147.091 12237858 12238578 + gene protein_coding_gene FALSE TRUE AT1G33760.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G71450.1); similar to TmCBF7 [Triticum monococcum] (GB:AAX28965.1); similar to OSJNBa0058G03.2 [Oryza sativa (japonica cultivar-group)] (GB:CAD41044.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0683252609474814 0.678029362478309 0.511913680345709 1 -0.382449182051764 1.85564833250480 0.0683252609474814 0.0988024346656662
AT1G54190_at 0.958760988880401 0.724580710475827 1.23894810931824 0.51963809528069 0.947639288556559 0.574842945019547 0.992334236364881 0.749180568197232 1.05067334164100 1.55098310463378 0.886397610062477 1.17799011291806 1.01417151678237 1.41396153684510 1.36005245028140 1.40812821745451 1.34161262839195 1.45648645547950 1.56154388508768 0.218391881179292 0.215126771718870 0.23697180445778 0.225755849241711 0.216931883010539 0.22662024063215 0.227080135683628 0.215126771718870 0.225310622955465 0.227926217270076 0.218805254941998 0.224944030510197 0.215126771718870 0.228908978357389 0.225581485773803 0.217163451692705 0.215126771718870 0.231023001351856 0.224366131012654 1 0|1 /|+ 20233828 20234188 20234006.625 20232705 20234243 + gene protein_coding_gene FALSE TRUE AT1G54190.1 ATBRXL3/BRX-LIKE3 (BREVIS RADIX-LIKE 3) Belongs to five-member BRX gene family. AtBRXL3 spans two loci, At1g54180 and At1g54190, according to Briggs et al, 2006. Temporarily, both AGI loci carry BRXL3 gene symbol. The new, merged locus will appear in the next TAIR genome release. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. similar to ATBRXL2/BRX-LIKE2 [Arabidopsis thaliana] (TAIR:AT3G14000.2); similar to major intrinsic protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38314.1); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591) -0.083165197098195 -0.677980729846566 0.511943338813516 1 -0.382481126317824 2.16078237266888 -0.083165197098195 0.151889174326923
AT2G36070_at 5.50494984600325 5.12467356645383 5.58943263455925 5.24191217247844 4.49589755711653 5.18362456200699 5.42626892292485 5.50967777205395 4.2315493967355 5.24741696610651 5.13628133648742 5.48804747969596 5.44451258825199 5.29410252209283 5.50618948242403 5.66356785230146 5.6117158612224 4.67255745840155 5.29213439488586 0.218654639154916 0.223716383017867 0.215518726441735 0.215518726441735 0.222311819010540 0.215518726441735 0.221487947194654 0.223690646271006 0.221401348952823 0.225872616206743 0.220354597405087 0.215518726441735 0.215518726441735 0.218851486732820 0.220806138705116 0.215518726441735 0.226498072932299 0.215518726441735 0.220312079812265 2 2|0 -|/ 15152290 15153434 15152777.143 15151915 15155210 - gene protein_coding_gene FALSE TRUE AT2G36070.1 ATTIM44-2 (Arabidopsis thaliana translocase inner membrane subunit 44-2) One of two genes in Arabidopsis that encode a putative subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is thought to provide the energy for translocation via hydrolysis of ATP. similar to ATTIM44-1 (Arabidopsis thaliana translocase inner membrane subunit 44-1) [Arabidopsis thaliana] (TAIR:AT2G20510.1); similar to Os07g0409700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059443.1); similar to Mitochondrial import inner membrane translocase, subunit Tim44 [Medicago truncatula] (GB:ABE94542.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim44; (InterPro:IPR007379) 0.0823728873575396 0.677759342877755 0.512078363953796 1 -0.382626517559306 10.3974656667925 0.0823728873575396 0.149400005593525
AT1G56680_at 1.59477969173178 1.48404494726191 1.75250533181918 1.54569539725217 1.29649305743658 1.58916417070922 1.55984022342315 1.84138592418367 1.81718517425695 1.58116643362853 1.53608907008951 1.33391700408320 1.34930566750709 1.63769183552549 1.68398230489325 1.54055528604079 1.68973800628429 1.84149659374278 1.49475154830446 0.185358450635977 0.188017340504792 0.186987252537672 0.187170165913685 0.187939560200383 0.189320635982113 0.189782468579673 0.185358450635977 0.191505396881167 0.187566619903799 0.185358450635977 0.190397774549879 0.185723465628015 0.18717666498105 0.185358450635977 0.190901860506103 0.187890309155054 0.189764631033341 0.189192539056821 1 1 - 21254247 21254801 21254528.455 21254003 21255082 - gene protein_coding_gene FALSE TRUE AT1G56680.1 glycoside hydrolase family 19 protein similar to glycoside hydrolase family 19 protein [Arabidopsis thaliana] (TAIR:AT2G43600.1); similar to chitinase [Brassica rapa subsp. pekinensis] (GB:BAF35569.1); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.0642428108608425 -0.677644630319481 0.512148336128815 1 -0.382701835573047 3.18680427118593 -0.0642428108608425 0.0811618799474816
AT1G74230_at 8.37910826831412 8.4790568392935 8.57994649322947 8.46638092312597 8.56676167702943 7.9081200341739 8.4827147985477 8.40217261662436 8.14752034246225 8.26953692268092 7.93271540525206 8.0462433231434 8.16982654327856 8.17996161106762 7.83096560115618 8.05123535144233 8.03856194043219 7.87205986464847 7.90116994387922 0.145872868443136 0.149564062329811 0.155879218787297 0.157904195605177 0.144796342142433 0.152164264207053 0.143282452344219 0.148032866292676 0.140460901252750 0.140460901252750 0.155188946596546 0.142950506367771 0.145136730297216 0.141425046402064 0.154807145260816 0.140460901252750 0.156726802197199 0.146019690214835 0.153016521356479 1 0|1 /|+ 27920022 27920342 27920172.3 27918364 27920744 + gene protein_coding_gene FALSE TRUE AT1G74230.1 GR-RBP5 (glycine-rich RNA-binding protein 5); RNA binding encodes a glycine-rich RNA binding protein. similar to GR-RBP3 (glycine-rich RNA-binding protein 3), RNA binding [Arabidopsis thaliana] (TAIR:AT5G61030.1); similar to unknown [Brassica rapa] (GB:ABB97027.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0731701900467088 -0.677463122532988 0.512259063588099 1 -0.382820986244681 16.468668676989 -0.0731701900467088 0.117776726351960
AT1G65310_at 1.51618888587964 1.68849348564700 1.49886282629171 1.64931852655128 1.29969766951193 1.85644627560644 1.64140211028582 1.33880937962629 2.25252884976244 1.98431618653192 1.97515012517454 1.67301377601047 1.89222642962068 2.01912597049427 2.10988718617391 1.96071376075522 2.28510450529464 2.46196093789648 1.55736375168938 0.23202455282719 0.23202455282719 0.234386465401090 0.245315415227790 0.234595786988136 0.238582490688291 0.233919559953770 0.238255332220796 0.236761128976049 0.237907855509754 0.23202455282719 0.232575737340031 0.237457304745389 0.240892717751588 0.237016708163854 0.236447849217116 0.243267670529893 0.236571384275927 0.237970262704609 1 1 + 24261637 24261953 24261773.091 24260879 24262136 + gene protein_coding_gene FALSE TRUE AT1G65310.1 ATXTH17 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17); hydrolase, acting on glycosyl bonds putative xyloglucan endotransglycosylase/hydrolase, expressed in the mature or basal regions of both the main and lateral roots, but not in the tip of these roots where cell division occurs. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 17 precursor (EC 2.4.1.207) (At-XTH17) (XTH-17) (XTH17) [Arabidopsis Thaliana] (GB:O80803); similar to ATXTH18/XTH18 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT4G30280.1); similar to xyloglucan endotransglucosylase/hydrolase 2 [Cucumis melo] (GB:ABI94062.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.072801383115132 0.677034298378802 0.51252072120042 1 -0.383102371832812 3.55042777780273 0.072801383115132 0.116585061317397
AT2G41990_at 0.692388328485707 0.968244658476749 0.9950278313939 0.830873884455294 0.364721760266744 1.03531627810875 0.903034766542221 0.983821469109475 0.749330540956355 0.72584982835685 0.906923302869261 1.03671316664139 0.641689539149276 0.836861006189247 1.35210119762803 0.709206551782764 1.04554789762133 1.39675128332025 0.797656272604505 0.213463630765046 0.206786426953299 0.211621846858591 0.205968090204969 0.206978810100795 0.205938912158266 0.208762066292050 0.205877604129642 0.213812125301542 0.215513781308236 0.207279750191836 0.207286369279521 0.217661196463625 0.204766875239936 0.209146495346781 0.204766875239936 0.207265689707893 0.211058336552327 0.213153272475837 2 2 + 17534786 17535524 17535178.545 17534335 17536015 + gene protein_coding_gene FALSE TRUE AT2G41990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35170.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to CAA30379.1 protein [Oryza sativa] (GB:CAB53482.1) 0.0763623310401277 0.676989874637535 0.512547831990528 1 -0.383131512478809 1.72084685066624 0.0763623310401277 0.129417438845312
AT1G73240_at 3.75435149445142 4.0417288683798 3.82312682599131 3.68604052086939 3.14092156239587 3.33534822720882 3.77113362472742 3.70666755803081 3.30903560157426 2.87677594054116 2.91997338389519 3.36305217704514 2.77034238533395 3.04480049764877 3.58901654208587 3.49875307936382 3.15901078267599 3.37094934838947 2.85777224887389 0.223911913142298 0.220057739758773 0.224711987781708 0.224045514290013 0.221925736837060 0.225710563850483 0.223320113937241 0.227730950253696 0.230232347775416 0.224834209754246 0.220746035256293 0.221697262359372 0.222533377223097 0.224785346430543 0.221796715882751 0.225004461472916 0.221248780084525 0.225958445793085 0.221481113338658 1 1|0 -|/ 27546089 27546719 27546391.8 27545848 27548581 - gene protein_coding_gene FALSE TRUE AT1G73240.1 similar to hypothetical protein SDM1_56t00017 [Solanum demissum] (GB:AAU90340.1) -0.061075879028006 -0.676781079390567 0.512675266382852 1 -0.383268452529744 6.77192243769913 -0.061075879028006 0.0655180504748402
ATMG00720_at 1.15226843027286 1.04963286987142 1.20452706011981 1.12945223409302 1.05452109358506 0.636569005910815 1.11498106707085 1.01474132828256 1.66639809353203 1.61923897253260 1.09222813797019 1.19647935843881 1.35350177976801 0.959832353669238 1.39650690119133 1.50374292769486 1.68375976852064 1.40738966019766 0.837425798563325 0.200365508691712 0.200239006502223 0.211444728888979 0.210504980828612 0.200239006502223 0.204750905569587 0.202766156115297 0.207546069509484 0.200239006502223 0.219540019014315 0.203484727545723 0.200239006502223 0.201242967579062 0.203090501483224 0.201623849730456 0.203393772315532 0.202420523265379 0.20693596315318 0.203304396217626 M M + 209500 209797 209634.091 209499 209822 + gene protein_coding_gene FALSE TRUE ATMG00720.1 Identical to Hypothetical mitochondrial protein AtMg00720 (ORF107d) [Arabidopsis Thaliana] (GB:P92513) -0.0634063763626113 -0.676766408762113 0.512684221044398 1 -0.383278072929751 2.39385383572113 -0.0634063763626113 0.0775667683947222
AT1G65470_at 2.91971025871595 2.67713993760615 2.505745622482 2.81798679323241 2.03018739237735 2.53603422854079 2.39891906837677 2.9371585120803 2.26599302016729 2.59524310812752 2.43103175597049 2.5030140839946 2.54804671587609 2.70818906811643 2.52209288302079 2.29017116486495 2.78750824712939 2.79019010013767 2.55956702209745 0.186109491614590 0.186683946859424 0.194514334182711 0.188562578105735 0.188366453040845 0.195104352790524 0.188087903150799 0.190407497655213 0.192266640353750 0.195478733531356 0.186847104413615 0.193532198535145 0.187175526254118 0.190906091062407 0.190849026068624 0.192800143278667 0.190876587358887 0.191482485370861 0.194291379942985 1 1|0 -|/ 24324735 24325955 24325491.9 24323411 24327703 - gene protein_coding_gene FALSE TRUE AT1G65470.1 FAS1 (FASCIATA 1) Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to At1g65470/F5I14_33 [Medicago truncatula] (GB:ABE78005.1); contains domain FAMILY NOT NAMED (PTHR15272) -0.0809069913893027 -0.676729880404202 0.512706517636579 1 -0.383302025910206 5.12592600293624 -0.0809069913893027 0.14498610514255
AT4G18470_at 0.972632610694898 0.82375153358209 1.48600638487595 1.13732387784806 1.02819897931645 0.639600420210135 0.626983434283263 0.879687696807577 0.820957181550345 1.20939210270080 0.69011165931542 1.04136929941786 0.978096050193361 1.03230003673521 0.370765429639713 0.328609233817626 0.914523805014775 0.964159765276773 0.664407773835832 0.191009393649768 0.196853903503711 0.206498845190585 0.196477823810623 0.191493094643964 0.195389216545233 0.190242433482406 0.197806222088027 0.19687668576809 0.196708431743680 0.194293277012586 0.195835129830176 0.197870864908476 0.194525269968543 0.191561002610919 0.192672898482537 0.190242433482406 0.197116636493352 0.212137033282017 4 4|0 +|/ 10194418 10195310 10194960 10192920 10195673 + gene protein_coding_gene FALSE TRUE AT4G18470.1 SNI1 ("SUPPRESSOR OF NPR1-1, INDUCIBLE 1") Negative regulator of systemic acquired resistance (SAR), repressor of pathogenesis-related PR gene expression which is removed by NPR1 upon induction of SAR. Encodes leucine-rich nuclear protein. Conserved in plants, with putative orthologs found in several plant species. Many NPR1-dependent PR gene are specifically derepressed in the sni1 mutant. The structural similarity of SNI1 to Armadillo repeat proteins implies that SNI1 may form a scaffold for interaction with proteins that modulate transcription. Histone modification may be involved in SNI1-mediated repression of PR genes. similar to SNI1 [Solanum tuberosum] (GB:ABF18894.1) 0.0693790769756874 0.676615880769888 0.512776105736111 1 -0.383376772048736 1.79339524851330 0.0693790769756874 0.103632633515462
AT1G12030_at 2.07536914647479 2.01269398103060 2.16411646372148 2.03201339177421 2.17066632311331 2.42296445985652 2.33076178970214 1.64472774497127 2.82424158939379 2.40780797010437 2.37028366961364 1.80517620742066 2.28276353729715 2.32443001160384 2.38464142168111 2.31829192930686 2.23186949007199 2.68348769698026 2.66995197384606 0.182149129129229 0.185264385765765 0.191335099917598 0.191002957259070 0.189307250416564 0.185937070924292 0.186474401777838 0.192194076007626 0.18231848196044 0.191185445285221 0.189128568363850 0.187265105488493 0.187955260780614 0.187637755069728 0.192772334301626 0.182149129129229 0.188374903024658 0.186126497517309 0.187015125947963 1 1 - 4064772 4065994 4065199.273 4064665 4066339 - gene protein_coding_gene FALSE TRUE AT1G12030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62420.1); similar to uncharacterized plant-specific domain TIGR01615 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93251.2); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -0.07616526077306 -0.676294056021547 0.512972585598853 1 -0.383587720821782 4.57372341588638 -0.07616526077306 0.129001365369725
AT1G50500_at 6.95676312645516 6.4551882431443 6.27528915047222 6.03989225788044 6.50583203114119 6.43685806775739 5.92695989505615 5.42744321924089 6.11794191202316 5.55132420642337 5.83384860344106 6.23419487969683 6.17311134678571 5.63652794445857 5.43582059247794 5.55856914908601 5.84882001855287 5.83969417153747 5.70152819830168 0.216011956742027 0.210273670105887 0.220501757074411 0.209812247351536 0.213451389585219 0.213937734071788 0.214307884090690 0.210243368443451 0.215121921446791 0.208640486259886 0.225168241908372 0.210277133339470 0.214644877385454 0.20983451322689 0.216129152338672 0.212823954542520 0.214695062858222 0.210282688896543 0.209444070641895 1 1 - 18711930 18713144 18712349.545 18711655 18719645 - gene protein_coding_gene FALSE TRUE AT1G50500.1 HIT1 (HEAT-INTOLERANT 1); transporter encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress. similar to membrane trafficking VPS53 family protein [Arabidopsis thaliana] (TAIR:AT1G50970.1); similar to vacuolar sorting protein 53 long isoform-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82733.1); similar to Os01g0906200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045132.1); contains InterPro domain Vps53-like, N-terminal; (InterPro:IPR007234) 0.0763439109219193 0.676242662563304 0.513003966389976 1 -0.383621399573194 12.0581973041454 0.0763439109219193 0.129648250516508
AT1G02550_at 1.59469565469687 1.40293991928206 1.69937539882751 1.44438530017945 1.33652808645480 1.58804832171254 1.35203180518630 1.40026113585464 2.15709344743483 1.78119306804627 2.33368155031117 1.30320490019477 1.72507942006851 1.78114255710965 1.83574918816262 1.57203176346205 1.60422406810148 2.01650623395757 1.98670499890645 0.205690456034891 0.205690456034891 0.205690456034891 0.215031625725994 0.218540398469888 0.218698498774998 0.218976999463374 0.21417167883375 0.215120567594232 0.207363361147321 0.211338743519787 0.205888387234189 0.205690456034891 0.218768616271668 0.225894508388078 0.207906882148497 0.215507249194844 0.223179359044491 0.210800594725374 1 1 + 536644 537121 536910.727 536483 537211 + gene protein_coding_gene FALSE TRUE AT1G02550.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G47340.1); similar to Plant invertase/pectin methylesterase inhibitor family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95341.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.0619712816264674 -0.675808703092413 0.513268987145835 1 -0.383905685232381 3.35050801859102 -0.0619712816264674 0.0708000257450017
AT1G12830_at 4.58736196666812 5.30130661426107 4.65466019853904 4.82427050836605 5.29951386415783 5.10615469648368 5.16001564605804 5.05933342053522 4.01026312783619 4.43056380671979 4.32196165413614 4.15795639614381 4.45803826470389 4.20433035256928 4.05426117862355 4.71968672559642 4.36150790833458 4.01719166864589 4.71419233029713 0.241740085154617 0.238851729223921 0.245998154760939 0.241848932793151 0.251886813901188 0.241146478960892 0.238920332442882 0.245911518759229 0.250102953803314 0.243274837058231 0.241513055338714 0.23750026467187 0.241081163967759 0.244303438174364 0.243288338038167 0.238584598456488 0.249932544957708 0.23853217096668 0.23750026467187 1 1 - 4374438 4374978 4374633.909 4374248 4375168 - gene protein_coding_gene FALSE TRUE AT1G12830.1 similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G50690.1); similar to hypothetical protein [Saimiriine herpesvirus 2] (GB:CAC84343.1); similar to orf 48 [Ateline herpesvirus 3] (GB:NP_048021.1); similar to Os04g0395700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052660.1) -0.0769971240087356 -0.67485424794269 0.51385216323881 1 -0.384530359670433 9.33501370948958 -0.0769971240087356 0.132475497889688
AT2G15530_at 6.1017785866674 6.79361354820797 6.27964383254557 6.82749684635703 6.96886554371202 6.78175798402717 6.33066518179871 6.64562308474415 6.89069719010885 7.02954055272424 6.48075285654333 7.07338168838186 7.05641557212182 6.83071819844637 6.66739817014983 7.30551211993831 6.49769477879313 6.66455990649354 6.76365851147217 0.211864297320943 0.213675199984075 0.227320370040044 0.214053225853303 0.209368116015032 0.214217588709298 0.218684297611578 0.206541508127933 0.219264556859581 0.22177896396443 0.217464396689832 0.212003695923866 0.215984675566097 0.221352738141513 0.215590598493919 0.212231876196626 0.223161889186988 0.208160088145542 0.212950325466528 2 2 + 6782752 6784108 6783292.455 6779996 6784353 + gene protein_coding_gene FALSE TRUE AT2G15530.1|AT2G15530.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G34040.1); similar to Zinc finger, C3HC4 type (RING finger), putative [Medicago truncatula] (GB:ABE89604.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.086971513947998 0.674678937342144 0.513959321566957 1 -0.384645009757885 13.4495236990710 0.086971513947998 0.165354275362073
AT1G08180_at 2.30752827404531 2.36806992105812 2.29122154176225 2.06574195152247 2.76833184730415 2.35200926989632 2.60673883441973 2.35815021295276 2.82927902043280 2.70067248932241 2.72134070712744 2.56669461219402 2.52240645394953 2.52574889764406 2.48330658277199 3.29948022427476 3.11542004294994 2.74559558239448 2.98974219273333 0.197286479149224 0.200582446689209 0.196513627679175 0.202504865458446 0.19858309030643 0.200490546780526 0.197560520125581 0.196673766931681 0.205860987014387 0.206468425655351 0.20070579655976 0.195051945344072 0.200341339545336 0.196943195229330 0.198667506716075 0.195051945344072 0.199183347836819 0.200047653673003 0.200136430001399 1 1 - 2564764 2565049 2564882.909 2564569 2565118 - gene protein_coding_gene FALSE TRUE AT1G08180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02420.1) -0.0665972104569577 -0.674295887206864 0.514193506580076 1 -0.384895423192315 5.18342250099153 -0.0665972104569577 0.093132857189939
AT1G68630_at 1.68978354827917 1.30061028581864 1.56874503863273 1.40780800686645 1.00582535637742 1.44117186947034 1.15394120316703 0.703621860699556 1.50870203335442 1.38182696745504 1.73964599990313 1.17328689714146 1.40846398864310 1.31645371083004 1.72809170334481 1.07987985241190 1.64952871062472 1.12682667872803 1.29116915976949 0.236296156066581 0.224698382497402 0.229777129560726 0.247857591635446 0.223679883097775 0.224651586256469 0.230617544371855 0.231564355657895 0.227453710283198 0.235807176177240 0.223523784123339 0.223523784123339 0.226032781253886 0.238457805664745 0.229523681167068 0.230266407531840 0.229129596397700 0.231330496971658 0.223523784123339 1 1|0 +|/ 25772731 25773097 25772866.7 25772725 25773121 + gene protein_coding_gene FALSE TRUE AT1G68630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58320.1); similar to ORFX [Lycopersicon esculentum] (GB:AAF74286.1); similar to fw2.2 [Lycopersicon pennellii] (GB:AAO12196.1); similar to fw2.2 [Lycopersicon pimpinellifolium] (GB:AAO12190.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.0763855745946928 0.674168191035423 0.514271590165113 1 -0.38497887382001 2.68227418594544 0.0763855745946928 0.130615654672778
AT1G31040_at 2.12138581920511 2.01997004193602 2.59799466125891 2.07030096745886 1.55287457700905 2.40716177246248 2.22022846591242 1.74778033576229 1.94115112632278 2.56031275603644 2.23546672435401 2.30220084964881 2.48247495523137 2.14010832116282 2.83637194678787 1.98732964834097 2.49510354806144 2.07201785108222 2.26904080221601 0.202237486206124 0.203076243422441 0.204101285642121 0.197047406576616 0.206777869154372 0.206640742378409 0.20325261078558 0.204960901538795 0.228991891301753 0.197719489230484 0.202610528428791 0.200880128069623 0.198357530161839 0.209745210553394 0.227634862503551 0.199401122901990 0.197047406576616 0.202367231153012 0.20695300579271 1 1 - 11069774 11070031 11069892.8 11069774 11072272 - gene protein_coding_gene FALSE TRUE AT1G31040.1 zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12646.1); similar to zinc-binding protein [Pisum sativum] (GB:BAB69816.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.0958955822843214 0.67410554436998 0.514309899890094 1 -0.385019808713963 4.38007164284669 0.0958955822843214 0.192842200488459
AT2G19010_at 2.27907035846498 1.99369962692403 2.30461342340312 2.28736611868426 1.56771776144414 1.7068689892991 1.75396972909751 2.24498766837259 2.47146489320488 2.06955705617161 2.37320609758536 2.40073549428395 2.20566425541399 2.18497229311475 2.03340014791271 2.19666739915944 2.08155045793326 2.7049114943735 2.38391801837688 0.213461895031778 0.209761857892797 0.219203041454723 0.219817590523132 0.219161158633908 0.222127347392900 0.220421857075092 0.210299353944702 0.226840146881518 0.214165713387371 0.209761857892797 0.209761857892797 0.225047007723064 0.213718124248426 0.218113825879276 0.209761857892797 0.220777489227026 0.220938092183771 0.221327985807219 2 2|0 +|/ 8251650 8252422 8252030.9 8250171 8252460 + gene protein_coding_gene FALSE TRUE AT2G19010.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G19050.1); similar to putative proline-rich protein [Oryza sativa (japonica cultivar-group)] (GB:BAB56037.1); similar to Os01g0748500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044240.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0684825700597297 -0.673688433571556 0.514565014954905 1 -0.385292270688807 4.3077625982395 -0.0684825700597297 0.101232630399299
AT1G63960_at 1.28543919557081 1.27229413979763 1.27735586426236 1.47751196831203 1.54723549267338 0.970559192038144 1.8243055856949 1.77100320216860 1.47539649384222 2.00850793939690 1.84568471229189 1.85175709221788 1.88877611376814 2.00664964733075 2.03573885492318 1.46124843674507 1.62121708082902 2.14070245881706 1.84331559017812 0.232007631230814 0.226281779254456 0.224518021202875 0.22852670122677 0.234551821799654 0.224357606446547 0.227100557102187 0.224779889135068 0.239036650771463 0.229641792152938 0.224357606446547 0.231334656419576 0.229256479428882 0.234927733834326 0.229362714295341 0.225194529279526 0.226639672868394 0.233532281793463 0.232920836388420 1 1 + 23741884 23742145 23742036.364 23741864 23742169 + gene protein_coding_gene FALSE TRUE AT1G63960.1 similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63950.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains domain COPPER TRANSPORT PROTEIN ATOX1-RELATED (PTHR22814); contains domain UNCHARACTERIZED (PTHR22814:SF5) -0.0696815548384398 -0.673590639260142 0.514624839200305 1 -0.385356128849599 3.24431898377529 -0.0696815548384398 0.106063163181250
AT2G18710_at 9.3357597339965 9.54300118629788 8.72810329981694 9.01853632092526 9.7661521939897 9.19039526152048 9.53222886057621 9.25245212139961 9.03052281364768 9.19689073574792 9.215501168402 9.56168906259586 9.15895681333854 9.1063383043813 9.70189944690116 9.44115165778238 9.16074942885139 9.27349739950083 9.48626713421758 0.171654951209836 0.161160921670598 0.176321894712484 0.167055020869595 0.159817335593735 0.174247378799384 0.160489837750111 0.169614925639624 0.177509322145142 0.162287634765856 0.167037803233797 0.160977890444024 0.168485247231208 0.175736545446559 0.165083022140919 0.157866880418314 0.168918390725753 0.167532194003093 0.157866880418314 2 2|0 -|/ 8119417 8120075 8119787.556 8119166 8121567 - gene protein_coding_gene FALSE TRUE AT2G18710.1 SCY1 (SECY HOMOLOG 1); protein translocase Identical to Preprotein translocase secY subunit, chloroplast precursor (CpSecY) (SECY) [Arabidopsis Thaliana] (GB:Q38885;GB:Q9SLG1); similar to EMB2289/SCY2 (EMBRYO DEFECTIVE 2289, SECY HOMOLOG 2), protein translocase [Arabidopsis thaliana] (TAIR:AT2G31530.1); similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY) (GB:O63066); similar to SecY homolog; targetted to the thylakoid membrane; the protein has a chloroplast targetting signal, but the processing site is not known (GB:AAB60305.1); similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY) (GB:P93690); contains InterPro domain SecY protein; (InterPro:IPR002208) -0.075242178744835 -0.673558453063912 0.514644529540506 1 -0.385377144080869 18.5785118580271 -0.075242178744835 0.126823382627002
AT3G03510_at 1.93129241065845 1.85425453239109 2.39215895482093 2.12833993637711 2.06468146805781 2.30120129851013 2.10664027740851 2.13507944504496 2.44851564662339 2.35802619095749 2.48303929656827 2.25004519266862 2.65478062541671 1.62743779453709 2.17017331378842 2.21802267736793 2.3332901046013 2.39127855733955 2.27384675525470 0.232547784656057 0.232229158933303 0.236058487445245 0.235809592710580 0.230883798981905 0.231485767756985 0.230883798981905 0.238879656239858 0.230883798981905 0.244740135481966 0.24649172470297 0.230883798981905 0.23297974844053 0.23615583029499 0.234219361246188 0.231130456198870 0.237146322743457 0.244173074320742 0.233504618752091 3 3 + 837131 837659 837366.455 836046 837714 + gene protein_coding_gene FALSE TRUE AT3G03510.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G17580.1); similar to putative photoreceptor-interacting protein [Sorghum bicolor] (GB:AAL73542.1); contains InterPro domain NPH3; (InterPro:IPR004249) 0.0603288312032702 0.673552637286596 0.514648087468549 1 -0.385380941260052 4.42727502852421 0.0603288312032702 0.0629418929447311
AT4G16640_at 1.76445657970225 1.80134938559849 1.72941411052173 1.81028373715441 1.08056045548183 1.78790996889600 1.71560445832694 1.76861405618963 2.04382947362541 1.66200827264657 1.71983833350932 1.79785406520249 1.86867957906251 1.84505265665663 1.50908471079820 1.85293882234323 1.98507852150624 2.18189493028593 1.79413984148583 0.205436757304428 0.194549578267035 0.196524650014122 0.199670620859227 0.207874935840080 0.195716357692092 0.199121332851448 0.194549578267035 0.194549578267035 0.200710340306074 0.19783110219587 0.206481060476037 0.197104846003495 0.196742417021805 0.203893267826206 0.194549578267035 0.195155399255894 0.197739151393392 0.209071762747074 4 4 - 9367477 9367913 9367705.091 9367270 9368797 - gene protein_coding_gene FALSE TRUE AT4G16640.1 matrix metalloproteinase, putative similar to matrix metalloproteinase [Arabidopsis thaliana] (TAIR:AT2G45040.1); similar to Peptidase M10A and M12B, matrixin and adamalysin; Peptidase, metallopeptidases [Medicago truncatula] (GB:ABE81395.1); contains InterPro domain Peptidase M10A and M12B, matrixin and adamalysin; (InterPro:IPR001818); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidase, metallopeptidases; (InterPro:IPR006026); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) -0.0743686060531022 -0.673512781577546 0.514672470456992 1 -0.385406962644855 3.52146337648716 -0.0743686060531022 0.123713428551901
AT1G62280_at 0.791178400764047 1.00193381829059 0.764005485798641 0.820488920566358 1.68086843121169 0.886793035185244 1.19628158227232 0.999465210872344 1.29098378625866 1.11170668067452 0.325932581627512 0.971291634753994 0.808267256957759 1.11728442767847 0.897635698103563 0.964532269551177 0.688560542251374 1.01523453824065 0.751342274740298 0.231703778051076 0.232976670570271 0.230131229343495 0.229112823019325 0.236460393041237 0.239319147765913 0.232891137154262 0.232849428028066 0.245121031468028 0.245259505955175 0.234579040464074 0.229112823019325 0.23424988655222 0.230678697173585 0.234181003450219 0.229112823019325 0.237560090496112 0.232187413368213 0.229153364374955 1 1 - 23010834 23011563 23011132.1 23010812 23012250 - gene protein_coding_gene FALSE TRUE AT1G62280.1 C4-dicarboxylate transporter/malic acid transport family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62262.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB18323.1); contains InterPro domain C4-dicarboxylate transporter/malic acid transport protein; (InterPro:IPR004695) -0.0809638317191372 -0.673331290842607 0.514783511819768 1 -0.385525438294186 1.96759516855518 -0.0809638317191372 0.14652535861143
AT2G37900_at 1.84308631798393 1.75439754578814 2.61521827442060 2.09818269358600 2.10475996631816 1.73856613730556 1.6983674354188 2.22231585371688 2.09668927514755 2.29727211454791 2.02999261216629 2.43007793279653 2.17158130065231 2.61970427751639 2.29482842340148 2.13122856643505 2.03475345715378 1.9453616677084 2.52697246768871 0.203713599807203 0.199491837029049 0.200729849995353 0.206155414604370 0.206393006024433 0.204621413843908 0.210823967730648 0.206932833142629 0.213475056474548 0.216738161538422 0.20099494309011 0.201746716934577 0.200851104351264 0.201929992445985 0.20356094927165 0.206144538223729 0.219226616474173 0.207454487944744 0.201005994776059 2 2 - 15871547 15872034 15871766.636 15871474 15873486 - gene protein_coding_gene FALSE TRUE AT2G37900.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G53960.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE84933.1); similar to Os03g0823500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051743.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.079926528474014 0.673239883719318 0.514839442769233 1 -0.385585097057235 4.26644626916234 0.079926528474014 0.143103897547988
AT4G27880_at 6.54387229619359 6.89090176869068 6.09740287039453 6.33649178179054 6.95447526542913 6.3114735848829 5.69948266774324 6.16848895590884 7.19752391643762 6.29901737280054 6.83783077076246 6.48158649399699 6.27685799892217 6.55031395358253 6.37999230777559 6.31966293290746 5.64015219073209 6.21951958783813 6.31881597490932 0.205144056671357 0.207337268418478 0.218149571918753 0.221244511932825 0.220689429085077 0.234461375052616 0.209696948849498 0.212131656767992 0.214442442725068 0.215271487293984 0.204703021555538 0.201877988619157 0.209734060574711 0.202032104436213 0.215127367350706 0.201877988619157 0.235775344352917 0.219107572936194 0.221048184133528 4 4|0 +|/ 13884256 13884895 13884471.8 13883229 13885058 + gene protein_coding_gene FALSE TRUE AT4G27880.1 seven in absentia (SINA) family protein Identical to E3 ubiquitin-protein ligase SINAT4 (EC 6.3.2.-) (Seven in absentia homolog 4) (SINAT4) [Arabidopsis Thaliana] (GB:Q9STN8); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G61790.1); similar to Zinc finger, RING-type; Seven in absentia protein [Medicago truncatula] (GB:ABE81696.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.083802552497145 -0.673235254875777 0.514842275200432 1 -0.38558811797146 12.8470029576861 -0.083802552497145 0.155846368255280
AT2G45850_at 8.1940869515524 8.28541831220828 7.25267873508939 7.3999666957405 8.56678669337646 8.46931985862355 7.78934281336349 7.55702309559283 6.8825789071032 7.00812409475525 7.25756960548474 6.51039068521234 7.06889442431787 7.3100221903559 6.46828667126978 6.19695103101248 6.95014182602125 6.74238010887501 6.79758474824697 0.200670671836942 0.194620250566770 0.199593089027481 0.205273378934393 0.198736652097970 0.195467577604025 0.199985244479984 0.202891683997677 0.211449403467692 0.194620250566770 0.197591916163483 0.196226229608905 0.201951191739403 0.198169536102518 0.199089562007155 0.194620250566770 0.200672781117410 0.206855069105791 0.196127401513676 2 2 - 18878998 18879787 18879465 18878553 18881046 - gene protein_coding_gene FALSE TRUE AT2G45850.1|AT2G45850.2 DNA-binding family protein similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT3G61310.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE82932.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.0586480731774546 -0.67293748696312 0.515024501518161 1 -0.385782409841512 14.7939156367036 -0.0586480731774546 0.0529183493803675
AT4G21105_at 10.6642945929754 10.9684895190589 10.6728329549279 11.0652924056868 10.7490448154126 10.4737759721066 10.4695722137049 10.9581979233352 10.8964195210207 10.8343851582894 11.1524423181955 11.1902020636314 11.0248524902527 11.2544348115013 10.9103643070534 11.0995859369461 10.3201395729721 10.8484937015673 10.6642456524242 0.096908168490045 0.0924347963832597 0.100929099542508 0.095956163144424 0.0924347963832597 0.101751544036019 0.0973561733769692 0.0932289924562202 0.100411103338206 0.096735818627061 0.0929002018459488 0.0934639940645687 0.0924347963832597 0.0970782238257867 0.0936199040540923 0.0929813829861765 0.110804379291031 0.0988182336043996 0.0924347963832597 4 4|0 +|/ 11266288 11266701 11266417 11265662 11267060 + gene protein_coding_gene FALSE TRUE AT4G21105.1|AT4G21105.2 similar to hypothetical protein MtrDRAFT_AC137510g19v1 [Medicago truncatula] (GB:ABE81487.1)|similar to putative COX VIIa-like protein [Pinguicula sp. Jobson 240] (GB:AAT36216.1) 0.0759061322258674 0.672416112227049 0.515343661661698 1 -0.386122414662198 21.6393948050726 0.0759061322258674 0.129627877139238
AT3G10370_at 6.85631398013963 6.29920169361888 6.69491400269767 6.68627132574255 6.74491788507722 6.79299098090901 7.26531099223492 7.07475642930525 6.41134834054705 6.4533111070941 6.51621668293724 6.59271049221023 6.55811403700863 6.61992801128149 7.0059705322565 6.43562911274467 6.54571453497599 6.28470803459241 6.0010263459507 0.189555964664936 0.187698848161399 0.182956494811192 0.193768741813500 0.187912586983725 0.187157199169833 0.192738847823078 0.190162749747706 0.197780896004656 0.184790747964801 0.190100988681564 0.191880095104685 0.187556893076744 0.185638597605575 0.192468921301946 0.187159808755046 0.189391729603158 0.187143006923140 0.192348151333931 3 3 + 3218437 3218886 3218679.818 3216373 3219275 + gene protein_coding_gene FALSE TRUE AT3G10370.1 glycerol-3-phosphate dehydrogenase, putative mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion. similar to Os04g0224900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052278.1); similar to Glycerol-3-phosphate dehydrogenase (ISS) [Ostreococcus tauri] (GB:CAL52805.1); similar to OSJNBb0072N21.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE01766.2); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain FAD-dependent glycerol-3-phosphate dehydrogenase; (InterPro:IPR000447) 0.068594886667774 0.672335443353025 0.515393053687132 1 -0.38617499984428 13.2310525916897 0.068594886667774 0.102244535382897
AT1G24060_at 1.24612649432375 1.42784360741589 1.33655342599037 1.61056016954509 1.39181330022062 1.18948493707115 1.09079477069981 1.22376449677851 1.79914005593853 1.73496626665407 1.35976314512749 1.57297358071433 2.08913140106711 1.31360588078812 1.54562590509172 1.66408726697967 1.69044885917665 1.72723990812903 1.36213020536339 0.18181565966487 0.17815566370757 0.175532856210793 0.172448679565818 0.179321401659876 0.185705344417065 0.179569793301958 0.174700348923505 0.171381223687809 0.175404871706822 0.175619626253947 0.172443268383717 0.177353471242179 0.179790737969614 0.175794134101022 0.172570347497009 0.175234301797834 0.183024734626764 0.188056097920625 1 1 - 8509382 8510020 8509808.091 8509365 8510051 - gene protein_coding_gene FALSE TRUE AT1G24060.1 unknown protein 0.0616256333172944 0.672329968255325 0.51539640608765 1 -0.38617856865755 2.94083681827378 0.0616256333172944 0.0706602598534188
AT1G36310_at 7.72248369070978 7.44979017202451 7.62143484053752 7.63640168695838 7.79669253304207 7.54054984012175 7.67389157274357 7.86687589555383 6.74366410961527 6.93250332052924 6.83283987557224 7.03886290584428 6.70201857010011 6.67841282029383 7.0207361806621 6.88203472649213 6.88429019174186 6.22734361696773 6.95764894952612 0.217596638042135 0.221586863935264 0.215866002397525 0.213896460065076 0.212037594822099 0.215337953965762 0.214752280800454 0.214128720229775 0.218034675672847 0.211674007470284 0.214206737677651 0.209403844400934 0.211342487481354 0.212551850380915 0.220199620034904 0.217094780160112 0.217170556278943 0.215066732497354 0.212045949824436 1 1 + 13671479 13671934 13671691.455 13670653 13672368 + gene protein_coding_gene FALSE TRUE AT1G36310.1|AT1G36310.2 similar to PREDICTED: similar to CG17807-PA [Rattus norve (GB:XP_001055538.1); similar to Os02g0750500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048132.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.0620560199286273 -0.672320126795455 0.515402432042814 1 -0.386184983514191 14.4941431060528 -0.0620560199286273 0.072896448039737
AT1G79790_at 9.08615535684905 9.04462293612267 8.86294302594412 8.78726754516457 8.8919836830735 9.02710609478026 9.02488788785982 9.04627645315596 9.32972145159386 9.43862329704244 9.5196152580222 9.62520231540614 9.15570428854017 9.34787273407688 9.55903325401484 9.49589357730713 8.93885221268584 9.2880351148271 9.18989508567478 0.104398364516126 0.102982166831303 0.101843396478604 0.101380467061729 0.101377998160593 0.108552060402882 0.116172205575722 0.103629345355536 0.115088113519457 0.100286820042989 0.0985726053526906 0.103138803192212 0.106529957222560 0.106962239740556 0.106443610879658 0.09793727582753 0.106191068154362 0.110153827368046 0.102938585983041 1 1 - 30021885 30022900 30022251.818 30021261 30023124 - gene protein_coding_gene FALSE TRUE AT1G79790.1|AT1G79790.2 haloacid dehalogenase-like hydrolase family protein similar to HAD-superfamily hydrolase, subfamily IA, variant 3, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96430.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834)|similar to HAD-superfamily hydrolase, subfamily IA, variant 3, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96430.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.0556488774999593 -0.672169587362948 0.515494612994976 1 -0.386283097369963 18.3142500591006 -0.0556488774999593 0.0279938357325985
AT2G43270_at 1.07911377105005 0.999178748717788 1.32818207582950 0.920659761804707 1.43803472906068 0.979467908632214 1.42188866682759 0.968756914879735 1.75470697638943 1.17633594407745 1.20921229939466 1.02910897448544 0.974302769316844 1.60307688372203 1.11765035217069 0.926043374151844 1.72202447889235 1.39093326918148 1.41715327043566 0.220109320076248 0.219589420055953 0.22862009685324 0.220672164846602 0.231148920671799 0.232571447958726 0.225431295353862 0.222683254672108 0.23740587530953 0.228538110834654 0.219480185046495 0.225031822302432 0.221451143762136 0.219480185046495 0.226957447204234 0.228248123546528 0.246297701185880 0.223530962888716 0.223695065029550 2 0|2 /|- 17995323 17995804 17995554.2 17995284 17996568 - gene protein_coding_gene FALSE TRUE AT2G43270.1 F-box family protein similar to F-box family protein / S locus-related [Arabidopsis thaliana] (TAIR:AT2G43260.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.0767515433367223 -0.672114708202163 0.515528220000014 1 -0.386318859786807 2.48988171233291 -0.0767515433367223 0.132708891085753
AT1G56560_at 7.08084195657065 7.5159201278823 7.88173377885217 7.90468756489372 7.52741930625533 7.57779016347271 8.04075370218955 8.1783614196411 6.43473438683057 7.14143935258249 6.20406977627561 6.35134826544167 7.07117356710905 6.96092060056675 6.69639685201208 7.17164073088422 7.7989778798535 6.70663235164606 6.71082503648157 0.201036871148019 0.197389252110063 0.205691399013670 0.203685010295919 0.200313254103830 0.204963526120864 0.198018256115128 0.197389252110063 0.209195860209324 0.20395799434921 0.203279160552641 0.203531917918457 0.200915305574848 0.213924787503351 0.209581288910072 0.200792919436862 0.204276161475093 0.203818262287841 0.210573951574639 1 1|0 +|/ 21197769 21198575 21198229.1 21196164 21198777 + gene protein_coding_gene FALSE TRUE AT1G56560.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT5G22510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G05820.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G06500.1); similar to invertase [Oryza sativa (indica cultivar-group)] (GB:AAO25633.1); similar to neutral invertase [Beta vulgaris] (GB:CAD19320.1); similar to neutral invertase [Daucus carota] (GB:CAA76145.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) 0.063375239736499 0.672069040061407 0.515556187333768 1 -0.386348617738211 14.5296774666056 0.063375239736499 0.0795473765403956
AT4G33380_at 9.05789559784412 9.22110921913062 8.84541020531077 9.22554168121884 9.26564741638871 9.2192704337873 8.88464947881543 9.35613954387285 8.85043826143774 9.13232941036861 9.18433925201619 9.17182977135498 9.20807138923956 9.30276120773872 9.13722099680537 8.93632761600656 9.2672518890821 9.10810956910766 9.11639721288711 0.124873054452996 0.124051313419029 0.125965508869771 0.122035365468619 0.121375716212098 0.126137463226806 0.121375716212098 0.124396717729589 0.144919794781295 0.123377949551030 0.136202029707869 0.128603426423142 0.123425966270353 0.136658382241345 0.127976616572438 0.130861334419719 0.142674459103578 0.129879668215186 0.133812785723665 4 4 + 16073905 16074565 16074183.143 16071895 16074876 + gene protein_coding_gene FALSE TRUE AT4G33380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04555.1); similar to Os02g0761600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048198.1); similar to Os06g0214100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057130.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57590.1) 0.0702264870575278 0.671993965371738 0.5156021652996 1 -0.386397533359697 18.2332299085378 0.0702264870575278 0.108844688277066
AT3G46570_at 0.683915936793982 0.887194730949054 1.10615594018677 1.02970874217181 0.590888141886695 1.08088726486563 0.912739265817716 1.04315034140975 1.05202251136643 0.941266409043353 1.34231860878884 0.742405398221631 0.861191486091403 0.690370300024164 1.50755319388301 1.27983781489064 1.38379872883991 1.33649752951751 1.24471166889515 0.217268342004274 0.217268342004274 0.220895495701518 0.217268342004274 0.218462520775908 0.222807834618870 0.227286325558161 0.223097371388511 0.220916592402825 0.221877930257767 0.219007572915242 0.217268342004274 0.219539090378076 0.220436425773381 0.226154391233274 0.219014980134564 0.217268342004274 0.221340538954532 0.227334355872643 3 3 - 17156901 17157295 17157107.455 17156782 17157852 - gene protein_coding_gene FALSE TRUE AT3G46570.1 glycosyl hydrolase family 17 protein similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G24318.1); similar to Os07g0240200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059262.1); similar to Glucan endo-1,3-beta-glucosidase precursor ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (GB:P52409); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.066911528149464 0.67194780471864 0.515630436659513 1 -0.386427607287748 2.0279951266604 0.066911528149464 0.095458532405202
AT2G22610_at 2.58539419850961 1.97376890238391 1.97710864581569 2.39714038172057 1.48461148556053 2.08014466208466 2.02994393531726 2.05002301671514 2.41779078989844 2.25527847047433 2.57689103427405 2.91453727632359 2.52362135983090 2.78453576654164 3.01911076246235 2.36325517673034 2.73534423861195 2.37697100401272 2.26891628404083 0.206188518006583 0.206188518006583 0.217975245569304 0.216078377126585 0.220868615668938 0.206188518006583 0.210572492890957 0.206188518006583 0.21527259334452 0.214072377386348 0.209376104894218 0.219058665944483 0.211167214761931 0.213454169888685 0.207532939830301 0.213841881072606 0.225365269602820 0.221725855868574 0.207468286991941 2 2 + 9610969 9611602 9611382.273 9606630 9611827 + gene protein_coding_gene FALSE TRUE AT2G22610.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G72250.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17019.1); similar to Os03g0114000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048740.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain t-snare; (InterPro:IPR010989) 0.0863784632205613 0.67172948069961 0.515764162928746 1 -0.386569821033217 4.56015615792324 0.0863784632205613 0.164681776486617
AT2G40000_at 9.78544947454848 9.91940839664964 9.91726116049248 9.85764624816888 10.5655028859353 10.1237322676949 8.59171627550522 8.35303587208535 8.56351539127662 8.34797690667788 7.23691456046694 7.0870340775981 7.90753093946714 7.86833009456797 6.21296193413808 8.19539395501284 7.88914833242223 7.49024154845533 8.80167562358164 0.256465094970918 0.25643784196583 0.253103218833586 0.252147242666869 0.262454057896700 0.258848201409392 0.252147242666869 0.252147242666869 0.264944636749055 0.252147242666869 0.25914387730952 0.269014507086388 0.257056182690091 0.259909094362018 0.292779775047741 0.258243088543396 0.25929391972079 0.255496528125212 0.252147242666869 2 2 - 16707758 16708298 16707940 16707588 16709106 - gene protein_coding_gene FALSE TRUE AT2G40000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55840.1); similar to putative Hs1pro-1-like receptor [Glycine max] (GB:AAG44839.1); contains InterPro domain Hs1pro-1, C-terminal; (InterPro:IPR009743); contains InterPro domain Hs1pro-1, N-terminal; (InterPro:IPR009869) -0.0657392038517977 -0.671700338686577 0.515782014342107 1 -0.386588800607376 17.6677192746908 -0.0657392038517977 0.0905240567709392
AT1G79360_at 0.999494522282981 0.569594230769231 1.26755516625056 1.21784466267576 1.13097382915133 1.05131790589627 1.25332893689123 0.952590510407367 1.18992244858340 1.27702793003132 0.749944246686922 0.914571341373235 1.49408109711584 1.67301675194728 1.06703906221807 1.13278646304219 0.934908836123491 0.972307071840549 1.15778249667186 0.204668066070508 0.205028797229753 0.205455276595438 0.201316097300142 0.210323495270137 0.212674961367401 0.208034068375371 0.204245662212024 0.214666129481470 0.207463970936911 0.202504286575527 0.201316097300142 0.202683898175262 0.208074001148737 0.201808607118849 0.203865007733601 0.202984832393724 0.222789380931686 0.210513741263352 1 1 - 29859162 29859499 29859334.909 29858931 29860714 - gene protein_coding_gene FALSE TRUE AT1G79360.1 transporter-related similar to organic cation transporter-related [Arabidopsis thaliana] (TAIR:AT1G16390.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Organic cation transport protein; (InterPro:IPR004749); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.0661292039685163 0.671665370800442 0.515803434972197 1 -0.386611573455204 2.21812554581841 0.0661292039685163 0.0922357107546708
AT3G29070_at 1.10564141468925 1.19899964143504 1.46647773568826 1.11372230121551 0.996898160441786 1.26672189741608 1.10088342921447 1.33549179725922 1.49808584025780 1.25223363950176 1.23661256078277 1.05194704842796 0.950167442217397 1.16246547433412 0.720431837186816 1.37175142813384 1.34170963497349 1.19150780516303 1.10320945391920 0.196412767268850 0.195367620961585 0.193713631802642 0.199205389977233 0.198823036008911 0.192794674657770 0.192794674657770 0.196097641062485 0.195857926464099 0.198913010520169 0.193746214533935 0.199827444093179 0.195896212033003 0.196122333554394 0.195129902216083 0.192794674657770 0.193969326039363 0.20596755015014 0.196520022230888 3 3|0 +|/ 11051600 11052341 11051946.667 11051367 11052390 + gene protein_coding_gene FALSE TRUE AT3G29070.1 protein carrier similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G26690.1); similar to Os03g0376000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050219.1); similar to GOLD [Medicago truncatula] (GB:ABE86767.1); similar to Os07g0632700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060368.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) -0.0652422688081199 -0.671514805438526 0.515895674337088 1 -0.386709616815328 2.40452144640096 -0.0652422688081199 0.0884101185540052
AT4G10920_at 8.98007585502204 9.10718458732956 9.03036286989111 9.16883190033707 9.48576570795226 9.06979128756374 9.05826987305275 8.86904311534205 8.3820280880667 8.63960377350357 8.23877479737292 8.12813461048322 8.21582124807865 8.20105512653607 7.77798582383657 8.67913162623404 8.78014444347225 8.01714371470244 8.68517565345382 0.15546427844025 0.149076042423250 0.15433379146714 0.149679915303607 0.151394365086367 0.152107284550265 0.151462536268986 0.148093753355876 0.16948800586456 0.149612899056485 0.153607518937176 0.153278969471608 0.156697686581085 0.15387015936976 0.158571035366851 0.146381015148018 0.146381015148018 0.157515423708351 0.153696985923169 4 4|0 -|/ 6697918 6698995 6698691.3 6696708 6699195 - gene protein_coding_gene FALSE TRUE AT4G10920.1|AT4G10920.2 KELP; DNA binding / transcription coactivator|KELP Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development. Identical to RNA polymerase II transcriptional coactivator KELP (KELP) [Arabidopsis Thaliana] (GB:O65155); similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT4G00980.1); similar to putative transcriptional coactivator [Brassica rapa] (GB:BAB41214.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Transcriptional coactivator p15; (InterPro:IPR003173) -0.0645586653761985 -0.671096254848512 0.516152138205558 1 -0.386982058003098 17.5080205306518 -0.0645586653761985 0.0855127845040542
AT1G67350_at 10.1864481278778 10.3564737199067 10.1242792413312 10.1527265255240 10.2026023739319 10.0500372538812 10.3745340929279 10.6186342862065 10.3750367842135 10.2315212638313 10.4011468549565 10.5695609585098 10.3678644037827 10.5762176783046 10.4496205222295 10.4374136462137 10.0224791334767 10.4354651916712 10.2167603044989 0.103387239451656 0.0989065353127024 0.103217794968044 0.104565167489413 0.102474044707687 0.110227718174276 0.107370275019640 0.0988890126468148 0.116182078701888 0.103713746127473 0.105386050289694 0.104085054226252 0.101830610528152 0.106632483410706 0.103026824621943 0.102228194131638 0.107908183287925 0.0992271729504957 0.105721331454000 1 1 + 25239614 25240358 25239900.818 25238934 25240541 + gene protein_coding_gene FALSE TRUE AT1G67350.1|AT1G67350.2 unknown protein -0.0592898051337478 -0.671088683933537 0.516156777924989 1 -0.386986984600842 20.5991722024439 -0.0592898051337478 0.0580646675362708
AT4G18670_at 2.02588633516272 2.55446851350531 2.27675222039922 2.5591487381014 1.81177073731214 2.12736106002699 1.92279764472828 2.27293145822536 3.18130558043635 3.25031074337862 3.34478531308949 3.38066946742683 3.59445031892597 3.18230128452987 3.76401450509974 2.83287322057355 2.90167834488299 3.54357547822789 3.06330364061383 0.221517465857855 0.217735103256298 0.223741444774901 0.231268688264099 0.222503657208543 0.228499431421911 0.216480050368519 0.223007000235648 0.216480050368519 0.219545158140984 0.221479280775670 0.234024739794076 0.219922306491169 0.221428629727852 0.220965210109646 0.226223486197633 0.226366366781530 0.221332230488589 0.229090261628354 4 4 - 10275951 10276399 10276129.455 10275472 10278502 - gene protein_coding_gene FALSE TRUE AT4G18670.1 leucine-rich repeat family protein / extensin family protein similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G24480.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); contains InterPro domain Atrophin; (InterPro:IPR002951); contains InterPro domain Extensin-like region; (InterPro:IPR006706); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0764036855863985 0.670979690751006 0.516223575468836 1 -0.387057903759289 5.43539799496808 0.0764036855863985 0.131946419183714
AT3G02950_at 4.61183506180263 4.75868016373233 3.83788886322045 4.1470549825008 4.54554271015328 4.57811883738694 4.08851407786643 3.92361863418969 4.07907294145634 3.73625353965022 3.98132064247143 4.21736381335310 4.40168397974157 3.91489834391349 4.33907126709329 4.30358754505698 3.91044051438822 3.96036090953943 4.00109624816864 0.2024018291052 0.203727842657692 0.204264715252224 0.216699296011396 0.208591317004296 0.205706806506552 0.208092390065817 0.212031267401136 0.218796665348026 0.204594689972578 0.207425041861465 0.201558128533381 0.206801106667649 0.204309949491914 0.205910194074699 0.201558128533381 0.216457847144767 0.211793637758414 0.207677833383262 3 3|0 -|/ 665640 666298 666056.2 665365 666914 - gene protein_coding_gene FALSE TRUE AT3G02950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16790.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC66731.1); similar to Os08g0160000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061046.1); contains InterPro domain Protein of unknown function DUF783; (InterPro:IPR008501) 0.0606363322186109 0.670975585310672 0.516226091628427 1 -0.387060574861529 8.34510589304145 0.0606363322186109 0.0659878298013961
AT1G77500_at 5.0372913788026 4.8469090786645 5.24950844107808 5.49600214762418 4.09631471898811 4.03710659209581 4.14734588370851 3.60626594544555 4.59422545250320 3.99804294671691 3.99058099978736 3.85132617624580 3.20297542893582 4.30473794546665 4.10311706277577 3.85937923141257 3.97288930639677 4.24472765094959 3.74236923031493 0.235864027016295 0.240619383762565 0.242934317327768 0.250095662248920 0.234560717631388 0.235261537718941 0.231323034106725 0.241887302294141 0.234200800238344 0.232325561355623 0.230334231406289 0.229662711021161 0.240261800730745 0.234922342036842 0.237302444309681 0.229912364984306 0.245200668793469 0.234009238181714 0.229662711021161 1 1 + 29129262 29129736 29129430.182 29126383 29130085 + gene protein_coding_gene FALSE TRUE AT1G77500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21740.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV24778.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.0699753760129349 0.67037364102928 0.516595092418174 1 -0.387452053105029 8.5909743241799 0.0699753760129349 0.108525788970422
AT1G43780_at 1.46738726522718 1.10386451956407 1.60518250345551 1.45395804610317 1.10317159067369 1.36415964792808 1.18875781616030 1.63514571243293 1.17122725540764 1.54128205585003 1.12145284313583 1.22261137402342 1.23050266158821 1.10901727344476 1.31153687124135 1.27754823771086 1.41901086504346 1.31902491677638 1.56593807075161 0.203582012564488 0.207147234186834 0.203901717813181 0.199628609061511 0.202425619568075 0.199386267791897 0.198480380026795 0.205699213853191 0.208192973870171 0.204765668342469 0.202601223198108 0.201529550157849 0.202381377978887 0.201498464888138 0.203965701876256 0.204656637075799 0.211600134457784 0.213977059342552 0.198480380026795 1 1|0 +|/ 16568663 16569789 16569236 16566251 16569839 + gene protein_coding_gene FALSE TRUE AT1G43780.1 SCPL44 (serine carboxypeptidase-like 44); serine carboxypeptidase similar to SCPL43, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G12480.1); similar to SCPL41 (serine carboxypeptidase-like 41), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G42230.1); similar to SCPL42 (serine carboxypeptidase-like 42), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G42240.1); similar to Os11g0213600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067496.1); similar to Serine carboxypeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93967.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.070990939135952 -0.670314070150381 0.51663161874564 1 -0.387490777923816 2.70394701654659 -0.070990939135952 0.112471492284652
AT1G15210_at 0.707154873735719 1.23837590949305 0.638994092976075 0.733660674761986 1.18049869767434 1.39922816308078 0.864895193594978 1.09751938911299 1.82537987440872 0.790023212251597 1.45754387155322 0.613351057081392 1.20637766266925 1.48352915911618 0.89733751298633 0.799090705620636 0.957968698697454 1.28910084286453 1.10174816797771 0.217730929531583 0.219082251719705 0.220431432439952 0.225493531510883 0.222094250161978 0.226646222153650 0.228003150584305 0.233376573836119 0.220839674086071 0.217842225960795 0.228784322024857 0.224033029396103 0.220672711387924 0.222625177289158 0.226674028125409 0.218030807864585 0.231685187168122 0.225179252155994 0.221986185554125 1 1 - 5231555 5232064 5231822 5231343 5236568 - gene protein_coding_gene FALSE TRUE AT1G15210.1 ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7); ATPase, coupled to transmembrane movement of substances Identical to Probable pleiotropic drug resistance protein 7 (PDR7) [Arabidopsis Thaliana] (GB:Q7PC86;GB:Q9XI48); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G59870.1); similar to ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G16340.1); similar to Pleiotropic drug resistance protein 12 (GB:Q5Z9S8); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59565.1); similar to Pleiotropic drug resistance protein 1 (NtPDR1) (GB:Q76CU2); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0699519568749703 -0.670204652142549 0.516698713195535 1 -0.387561898311164 2.14608480282189 -0.0699519568749703 0.108503224294789
AT4G14770_at 3.32344604831368 2.79178575714748 2.82025452540068 2.83877385129102 2.47384011034987 2.58863391277304 2.77222849499967 2.83981696856177 3.18124607502264 3.02634336219681 3.43592117463067 3.82850664692555 3.55681829146972 3.19353826971498 3.69111455964612 3.08215377597631 3.49703318092636 3.18562390374951 2.93998615842024 0.183196226448199 0.182097782626771 0.187124429408631 0.184914480930769 0.189245561703151 0.187938201820823 0.188595575985730 0.184308450075948 0.191562768992189 0.18855359434077 0.182097782626771 0.18325525382826 0.187351995015596 0.192221022651362 0.182097782626771 0.196057045662357 0.182097782626771 0.187633867170694 0.194741960504948 4 4|0 -|/ 8481538 8482252 8481827 8481369 8484820 - gene protein_coding_gene FALSE TRUE AT4G14770.1 tesmin/TSO1-like CXC domain-containing protein similar to TSO1 (CHINESE FOR 'UGLY'), transcription factor [Arabidopsis thaliana] (TAIR:AT3G22780.1); similar to Calcium-binding EF-hand; Tesmin/TSO1-like, CXC [Medicago truncatula] (GB:ABE82953.1); contains InterPro domain Tesmin/TSO1-like, CXC; (InterPro:IPR005172) 0.0666015714323366 0.670146334947136 0.516734475049154 1 -0.387599799447193 6.04761275390122 0.0666015714323366 0.0949045802163127
AT2G28440_at 0.72404342104808 1.03703368178418 0.72680049078216 0.820127253582616 1.18387186983274 1.19528680233514 0.980277337716125 1.16316335116008 1.72562557825170 1.39942301325390 1.64812963625709 1.39524858941455 1.07682760967269 1.49505001666171 1.23072582356734 1.42071032033514 1.77314211898651 1.53161740221544 1.59252707881266 0.210974810968185 0.20368219481596 0.20671258234721 0.204165642611917 0.202927618827619 0.207092675545844 0.199645631272651 0.20438657873222 0.207411149704915 0.207759684977993 0.199645631272651 0.199645631272651 0.206373293110245 0.204388308751038 0.20468149255727 0.200280181303175 0.201960637995128 0.207280378163599 0.205839544143935 2 2 + 12168593 12169063 12168794.182 12168303 12169109 + gene protein_coding_gene FALSE TRUE AT2G28440.1 proline-rich family protein similar to DNA binding / ligand-dependent nuclear receptor [Arabidopsis thaliana] (TAIR:AT1G44191.1); similar to late embryogenesis abundant protein-related / LEA protein-related [Arabidopsis thaliana] (TAIR:AT3G19430.1); similar to minus agglutinin [Chlamydomonas reinhardtii] (GB:AAS07042.1); contains domain PRICHEXTENSN (PR01217) -0.0603508137972808 -0.670145732326817 0.516734844601661 1 -0.387600191082559 2.48830385756925 -0.0603508137972808 0.0648090022266363
AT1G50320_at 10.9381034436095 11.1939926045893 11.0672641216745 11.1652130405097 11.2157504882589 10.8105423498047 11.5536783476950 11.7070571092568 11.5981897403811 11.4376570428880 11.6975995901072 11.6831677542433 11.4057559887179 11.4958419537566 11.6649044837110 11.7256461040308 11.2535530912517 11.7214212560348 11.247551985941 0.0740418492574004 0.072729796904238 0.0754549181967362 0.0754920907083293 0.0718535158292981 0.0760196245365072 0.074622034417113 0.0728783518281455 0.0746250940811755 0.0713194970945343 0.0741031358807705 0.0738418976685605 0.0732838997726065 0.0734347411778137 0.0784317766462514 0.0713194970945343 0.0761093363522155 0.0773761445707634 0.0713194970945343 1 1 - 18642289 18643096 18642785.182 18642052 18643204 - gene protein_coding_gene FALSE TRUE AT1G50320.1 ATHX (THIOREDOXIN X); thiol-disulfide exchange intermediate encodes a prokaryotic thioredoxin Identical to Thioredoxin X, chloroplast precursor (ATHX) [Arabidopsis Thaliana] (GB:Q8LD49;GB:Q9SEU5;GB:Q9SX49); similar to ATY1 (Arabidopsis thioredoxin y1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G76760.1); similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE78561.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) -0.0651643441153638 -0.670012242435526 0.516816710158999 1 -0.387686936544501 22.710843121909 -0.0651643441153638 0.0887134201877521
AT2G05590_at 6.02836786956011 6.42135669243426 5.93081280725966 5.91525118702384 6.76516016356932 6.85074357089115 6.53752214287045 6.93900189673778 6.58554487996177 6.27886145854197 6.53025340317653 6.24425501308771 6.42977898973808 6.62745149824815 6.03801811887198 6.60121275806542 6.4195081029678 6.28907605368442 6.38405381679856 0.207008282485878 0.203965147837275 0.205651894806822 0.211486730650875 0.204011851049521 0.20302928247142 0.210630744412858 0.208955234873362 0.214947726116237 0.208898010636182 0.204994486277799 0.200993211879449 0.200838094942473 0.204652350124649 0.216973759788834 0.203139337660285 0.231646664962872 0.205327037379878 0.211433808095017 2 2|0 +|/ 2067585 2068556 2067963.2 2067094 2069203 + gene protein_coding_gene FALSE TRUE AT2G05590.1|AT2G05590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39870.1); similar to TLD, putative [Medicago truncatula] (GB:ABE87991.1); contains InterPro domain TLDc; (InterPro:IPR006571) -0.0673896805427088 -0.669751636290753 0.516976554629905 1 -0.387856240142367 12.8303258549587 -0.0673896805427088 0.0983816739844788
AT3G27360_at 4.35695300841827 4.74629494189175 3.92498894593066 3.86184575409844 3.5761331010539 3.60455505964952 5.29187717008688 5.06712602466757 4.84708886167442 5.44268198942304 6.11102307224447 7.24295817078369 4.79717323504882 5.78402945087388 7.22905743222961 6.04645995250264 4.81785496976569 6.04343532921972 4.74383518708627 0.260202482423537 0.254992564829146 0.273195683227607 0.266145421690423 0.262738850592602 0.270065547716 0.254992564829146 0.257191576819117 0.265828265590164 0.259157658869088 0.254992564829146 0.258428207637927 0.254992564829146 0.262721640624746 0.26023838699613 0.254992564829146 0.264326234502179 0.263303795334926 0.25597371709386 3 3 - 10130714 10131065 10130918.364 10130520 10131174 - gene protein_coding_gene FALSE TRUE AT3G27360.1 histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10400.1); similar to Histone H3.2 (GB:P68427); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0629425661136653 -0.669305337184959 0.517250363042784 1 -0.388146039790596 9.81382223288036 -0.0629425661136653 0.0787151629746015
AT1G50310_at 1.24879718776273 1.19617848389116 1.46240672680315 1.09448327163400 1.06927816492221 1.22326382571589 1.35561735055676 1.03114600659365 0.787997129956054 0.906872667409246 0.915994180646129 1.18063269937998 1.28283765301647 1.09295303697989 1.50088610031340 1.14321370323443 1.03807579501781 1.00303454964138 1.36095543088653 0.221683486271172 0.221683486271172 0.226108847290430 0.221683486271172 0.221683486271172 0.225172609330276 0.224483754530446 0.221683486271172 0.225932145133324 0.227852188466986 0.222277048806019 0.221683486271172 0.223999520981663 0.22701396222533 0.223876668918004 0.226891570316190 0.225036010463675 0.226549445514439 0.224690391192768 1 1|0 +|/ 18641070 18641610 18641384.6 18639652 18641778 + gene protein_coding_gene FALSE TRUE AT1G50310.1 monosaccharide transporter (STP9) Identical to Sugar transport protein 9 (Hexose transporter 9) (STP9) [Arabidopsis Thaliana] (GB:Q9SX48;GB:O81706); similar to STP11 (SUGAR TRANSPORTER 11), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G23270.1); similar to STP4 (SUGAR TRANSPORTER 4), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G19930.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE88968.1); similar to putative monosaccharide transporter 1 [Petunia x hybrida] (GB:AAC61852.1); similar to monosaccharide transport protein 1 [Zea mays] (GB:AAT90503.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.065259147714572 0.669299667506499 0.517253841992104 1 -0.388149720199968 2.29180231433292 0.065259147714572 0.0894425849781197
AT1G63600_at 0.276632820457604 0.360022585318701 -0.129241911513103 0.244301127976826 0.485139119363948 0.512324868835912 0.53106309075309 0.235114544238170 0.900909856697672 0.066247464410604 0.60063421445269 0.483263427663311 0.847653210355291 0.102678917357508 0.465545594378101 0.546429673866742 0.78813730707413 0.444496386779334 0.803706103753246 0.193752052221262 0.193269270844164 0.200455678998945 0.193269270844164 0.196311044906304 0.199798817410749 0.193269270844164 0.197011423660131 0.199735990081792 0.201153471393233 0.198413261296758 0.195123084097635 0.202300808463114 0.199381663234204 0.193269270844164 0.205471477243147 0.209227922966592 0.202563764554698 0.194700138208399 1 1 + 23585755 23586250 23586014.182 23585375 23586287 + gene protein_coding_gene FALSE TRUE AT1G63600.1 protein kinase-related similar to ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana] (TAIR:AT1G63550.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) -0.0640052129111406 -0.669078120088575 0.517389795680424 1 -0.3882935129316 0.876990855567924 -0.0640052129111406 0.083857951532489
AFFX-LysX-5_at 2.30409359145760 2.29951221644546 2.93500633459112 2.28823790612384 3.05866185065465 2.14419598977460 3.38428554180798 2.37645970972025 3.60196295219245 4.00062081891405 3.94064643161431 4.23703541240632 3.42789739956617 3.93819248744306 3.31302455295283 3.94921586549211 3.49909846176424 3.01268179729323 4.15103219489551 0.161802921735089 0.156229312222729 0.153669829490026 0.155160534508643 0.150710101504605 0.155304316779422 0.154398397089339 0.157739989842231 0.152570565229134 0.159048449565120 0.152291329546939 0.154131122528952 0.152067781168640 0.153235115418330 0.151865007070681 0.152930498509986 0.151734162375410 0.158003930054213 0.155688576472934 NA NA NA NA NA FALSE FALSE -0.118855091086285 -0.669035603373625 0.517415888694085 1 -0.3883211029208 6.39010466243887 -0.118855091086285 0.260749858867465
AT1G67640_at 1.32989732589569 1.09396029004400 1.52478690078654 1.41226984037368 1.564525576061 1.39700113586077 1.60266181159339 1.07637704820288 1.76688036892760 1.66775022005238 1.21995565413507 1.60836404765871 1.38900157177639 1.3823175619436 1.81536962677283 1.26791368036125 1.69747065270308 1.76903775422068 1.30342817171055 0.219754491937288 0.217782252063982 0.221054919619318 0.219065366256455 0.217782252063982 0.226533311995680 0.219120817122704 0.221080190887799 0.223858986116326 0.221853128678234 0.223176231061333 0.218588889350532 0.217782252063982 0.2179764733588 0.223093665928532 0.218187764312621 0.218003827633427 0.220447067649451 0.22054352552888 1 1|0 -|/ 25355848 25356544 25356323.111 25355791 25357571 - gene protein_coding_gene FALSE TRUE AT1G67640.1 lysine and histidine specific transporter, putative similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1), amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G40780.2); similar to LHT2 (LYSINE HISTIDINE TRANSPORTER 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G24400.1); similar to lysine and histidine specific transporter, putative [Arabidopsis thaliana] (TAIR:AT1G48640.1); similar to Os12g0244400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066488.1); similar to Os08g0127100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060901.1); similar to histidine amino acid transporter [Oryza sativa (indica cultivar-group)] (GB:CAD89802.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.0691238214013907 0.668979221902152 0.517450491874308 1 -0.388357687567309 2.92420086056556 0.0691238214013907 0.105742837820603
AT1G60030_at 0.846443280200841 1.09769436269037 1.19988382313602 1.20892483051074 1.00862169826742 1.22639394697018 1.17771466561606 1.41441834413940 1.48162032135113 1.66011629236655 1.31365892314089 1.47511092389329 1.52862552038097 1.40255566383150 1.60857244333353 1.22641843676652 1.31522920975054 1.62621673410045 1.61791620417137 0.199401024016236 0.202229179944093 0.200152915072158 0.203637529511053 0.201440097389977 0.201646897076561 0.205412234753689 0.199401024016236 0.203896463244447 0.202709746511675 0.199401024016236 0.199586973528753 0.205327741609783 0.199401024016236 0.20143680354398 0.204453242235190 0.205481358003481 0.202977087389519 0.200068567254037 1 1 - 22117658 22118367 22117972.455 22117506 22120510 - gene protein_coding_gene FALSE TRUE AT1G60030.1 xanthine/uracil permease family protein Identical to Nucleobase-ascorbate transporter 7 (AtNAT7) (NAT7) [Arabidopsis Thaliana] (GB:Q0WPE9;GB:Q9ZUJ0); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT5G49990.1); similar to permease [Arabidopsis thaliana] (TAIR:AT5G62890.3); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT1G10540.1); similar to Xanthine/uracil/vitamin C permease; Thioredoxin-related [Medicago truncatula] (GB:ABE83225.1); similar to root uracil permease 1 [Oryza sativa (japonica cultivar-group)] (GB:CAJ84113.1); similar to putative permease I [Lycopersicon esculentum] (GB:AAX73299.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) -0.0613070229186073 -0.668878626915265 0.517512233756117 1 -0.388422954344634 2.65931157953941 -0.0613070229186073 0.0706483303090901
AT3G13228_at 0.977822503531482 0.552886371175618 1.16392008128121 0.76407005147365 0.884917923962124 1.06511188534813 1.00402161853728 0.890425149933931 1.40206307672281 1.38870835753425 0.97659345705046 1.03476281054563 1.21458804586132 1.17390406413310 0.872239643233004 1.10022998257193 0.880721939132947 1.40692219566546 1.21332210516622 0.172187263581179 0.177781864261024 0.174356426331366 0.176549587117890 0.173988818413525 0.171106361264820 0.171828903315975 0.178296652364611 0.174684989079334 0.179398353826070 0.180516749376277 0.17456331906481 0.187095358129843 0.175041871082506 0.179845616544922 0.172505884153122 0.175622622678124 0.189670803062032 0.179649380811047 3 3 + 4267495 4268025 4267785.091 4266971 4268258 + gene protein_coding_gene FALSE TRUE AT3G13228.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18760.1); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_811415.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0694932522392462 -0.668275790904947 0.517882325880063 1 -0.388813890643783 2.12149350502976 -0.0694932522392462 0.107492550852067
AT1G28600_at 7.9942230684932 8.39554002614965 8.39489711398479 8.36296017589988 8.20355842766799 7.38626170387108 7.99756963228022 8.54343016560826 6.49486681541227 7.11726802204467 6.97758890719023 6.89104222505942 6.8549037909981 7.10511955206584 6.54691941246804 6.5995416740326 6.35664680028556 6.18167449972143 6.57031117347824 0.254601604532979 0.258006989472381 0.262878978664637 0.255698855943646 0.253877615127996 0.272936604102627 0.259102028654586 0.257226171065106 0.275051318904172 0.255873347436057 0.260980013743822 0.253877615127996 0.260875873798727 0.259249895136798 0.263587242534966 0.253877615127996 0.278853538548199 0.282796477409265 0.257198152445163 1 1 - 10051225 10052010 10051535.091 10050987 10053103 - gene protein_coding_gene FALSE TRUE AT1G28600.1|AT1G28600.2 lipase, putative|carboxylic ester hydrolase similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28610.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0920368818471504 -0.66797774602814 0.518065358902391 1 -0.389007052156458 14.8681358449307 -0.0920368818471504 0.183797815763829
AT1G31270_at 1.7416902304022 1.94721613808927 1.78910649964417 1.96774489235331 1.48198429854933 2.23052600811983 1.76091102016293 2.06231092493609 2.13441534204629 1.58146135538787 2.06164924863890 1.63329189656849 2.18148333916669 1.86952368814406 2.00487417726862 2.02672964593239 1.85020494218365 1.87013616619451 1.58052006108082 0.203267617108376 0.204130194376337 0.205930188961966 0.202184156336437 0.202184156336437 0.20669806583937 0.205522002913422 0.207274006744617 0.210057016113103 0.207481205928896 0.202184156336437 0.204330244339083 0.214135710561495 0.20417272055324 0.204582413278046 0.203011022120441 0.209504961364749 0.217720621461124 0.207949208916213 1 1|0 +|/ 11178332 11178611 11178444.5 11178330 11178639 + gene protein_coding_gene FALSE TRUE AT1G31270.1 unknown protein 0.0805396990547709 0.66767005388409 0.518254356531107 1 -0.389206383277658 3.72403736362405 0.0805396990547709 0.147382151260526
AT2G40650_at 6.6082061098521 6.59948165054387 6.49510118869432 6.27047454932506 6.03174172551121 5.67207418611811 5.4027083602213 5.46767222654316 7.0378133798626 6.73012704963263 7.15504034435587 7.11001840799554 6.4022918416898 7.07281777220174 6.86207667538439 7.17884412465857 6.68110692138118 6.7064534238938 6.84249384280285 0.185249003268789 0.182349816018758 0.183248885921628 0.190173653921098 0.186065383480916 0.188258873959986 0.190977935007993 0.192035592390238 0.196028571244264 0.186216976162845 0.183139184539041 0.185177662003721 0.183963279856217 0.183463475184253 0.183519950543482 0.183726805203255 0.187968461831461 0.196127499949064 0.182152536657736 2 2|0 -|/ 16970668 16971893 16971161.3 16970397 16972830 - gene protein_coding_gene FALSE TRUE AT2G40650.1 pre-mRNA splicing factor PRP38 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53440.1); similar to ATSRL1, binding [Arabidopsis thaliana] (TAIR:AT5G37370.1); similar to Os09g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062557.1); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84870.1); contains InterPro domain PRP38; (InterPro:IPR005037) 0.0618836285672417 0.667578835678758 0.518310394468401 1 -0.38926546069194 12.9515454727900 0.0618836285672417 0.0742552307788342
AT3G13350_at 3.91241972016782 3.54422880412021 3.48157166007861 3.06268376592125 3.96146923983771 2.88780444596947 3.25423192521547 3.08389764111163 3.44911576059045 2.89695068655475 2.92218261753704 3.04265571807136 3.35695047207612 3.07399979786447 3.20232096937466 3.61615718881254 3.12066489679096 2.48616639123340 3.26830962289611 0.229038113237974 0.221787409747498 0.220898402325735 0.223223312607526 0.220849780850356 0.224141803775163 0.220849780850356 0.221547915188039 0.229329928344622 0.225114996082436 0.220849780850356 0.220849780850356 0.220849780850356 0.228131040340448 0.226919965864814 0.220849780850356 0.226523095926051 0.227779951432581 0.231763649922250 3 3 - 4335733 4336824 4336161 4335482 4337993 - gene protein_coding_gene FALSE TRUE AT3G13350.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55650.1); similar to High mobility group proteins HMG1 and HMG2; AT-rich interaction re (GB:ABE91338.1); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.101233505789527 -0.667506277852368 0.518354971360387 1 -0.38931244744714 6.55225304021136 -0.101233505789527 0.211438629907231
AT4G36830_at 1.42192625991318 1.93060764995695 2.14391463497288 2.07456012686170 2.10264089203764 1.20195735293059 2.00989449474065 2.42671369667432 1.53996140944903 2.1422765499266 1.92452816728365 2.31021361062147 2.18643597494259 1.81289050690262 1.6987267015569 2.37163745774739 2.43909089626959 1.36754243560083 1.58947326498122 0.241929354547511 0.245248280071475 0.245545294001395 0.250014082171241 0.248288259855792 0.246942850113485 0.241929354547511 0.241929354547511 0.251469537023772 0.243571570955627 0.24290425643201 0.248954202310310 0.247125557489824 0.251967220215297 0.244421518887997 0.246322936881274 0.246470351286164 0.241929354547511 0.251770293692621 4 4 + 17349897 17350327 17350093.182 17349440 17350484 + gene protein_coding_gene FALSE TRUE AT4G36830.1 GNS1/SUR4 membrane family protein similar to GNS1/SUR4 membrane family protein [Arabidopsis thaliana] (TAIR:AT1G75000.1); similar to GNS1/SUR4 membrane protein [Medicago truncatula] (GB:ABE78502.1); contains InterPro domain GNS1/SUR4 membrane protein; (InterPro:IPR002076) 0.0950644352297206 0.667034589015288 0.518644815053418 1 -0.389617788138994 3.79958703533661 0.0950644352297206 0.193367651797933
AT1G77230_at 3.30013446286689 3.11684005781471 3.21774928153255 2.91810313405973 3.00066511687539 3.58087439488337 3.20179271362360 3.31013580712383 3.00755386855419 2.62770426834232 2.69505782605322 2.98161020896704 3.25689473036262 2.84984966621825 3.04903218557347 2.53147746402764 3.12416973818926 2.67994359581117 2.46016589274784 0.200165322901826 0.196922251256003 0.202573295309317 0.199302773917408 0.198185289831553 0.200266850793807 0.200420366394756 0.193845260404769 0.196216356698459 0.193845260404769 0.196653737823224 0.194239671573057 0.209276419045142 0.198256456078152 0.196086505188948 0.195701256107721 0.199509393684788 0.193845260404769 0.193845260404769 1 1|0 +|/ 29021166 29022713 29022109.556 29021023 29022858 + gene protein_coding_gene FALSE TRUE AT1G77230.1 tetratricopeptide repeat (TPR)-containing protein similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT4G08320.1); similar to putative tetratricopeptide repeat (TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33298.1); similar to Os02g0553500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047112.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0723259859163592 0.666951107311763 0.518696122916419 1 -0.389671808185815 6.00302642282173 0.0723259859163592 0.118862943826144
AT2G17660_at 2.75337783984620 2.28429229284489 2.49767707472506 2.24181158433215 1.80361094320775 1.76093148966827 2.29705581955994 1.90086859258379 2.03216238725085 2.53958093966358 2.61597810770917 2.20977773145343 2.67268162536998 2.30417391742796 2.19116243671734 2.20366104144783 2.47788575046477 2.47443869974164 2.33896309215830 0.169616808495636 0.168193030463389 0.174715511998937 0.182274285677813 0.165618339672398 0.168816634609520 0.178036018484859 0.186489755397012 0.182091052243311 0.166803286012395 0.171929293056132 0.173383560994101 0.168051972949279 0.176491693626454 0.173447961537858 0.167947090473573 0.172583379209720 0.168314527479824 0.176829217735426 2 2 + 7680441 7680625 7680517.636 7680364 7680794 + gene protein_coding_gene FALSE TRUE AT2G17660.1 nitrate-responsive NOI protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35655.1); similar to nitrate-induced NOI protein [Zea mays] (GB:AAB86937.1); contains InterPro domain Nitrate-induced NOI; (InterPro:IPR008700) -0.0713698778957283 -0.666764083901235 0.518811078399597 1 -0.389792806407775 4.54109756467055 -0.0713698778957283 0.115350280878949
AT1G01040_at 7.16717501527298 7.11180721758215 7.63393674738947 7.23934811775695 7.83258246237356 7.06158647716734 7.2005814923063 6.69580213536986 7.14593305923884 7.32352702144971 7.3672492239727 7.53624692108816 7.07141284829363 7.24435499895455 6.72507636589482 7.39167858882258 6.51342581585052 6.93250046920068 7.48644681577644 0.193257555283977 0.171615020795995 0.191917555843268 0.185827043826700 0.173025360170261 0.195284404190379 0.173237200711812 0.172661281106023 0.186152608505375 0.176112588099458 0.17740926335174 0.171615020795995 0.171615020795995 0.187017798563991 0.176138909810385 0.173553341850877 0.201610744506213 0.179086514603806 0.173730249445619 1 1 + 30443 31040 30764.364 23146 31227 + gene protein_coding_gene FALSE TRUE AT1G01040.1 DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. Identical to Endoribonuclease Dicer homolog (EC 3.1.26.-) (Protein CARPEL FACTORY) (Protein SHORT INTEGUMENTS 1) (Protein SUSPENSOR1) (CAF) [Arabidopsis Thaliana] (GB:Q9SP32;GB:Q9FDY6;GB:Q9MAN0); similar to DCL3 (DICER-LIKE 3), RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G43920.1); similar to Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Type III restriction enzyme, res subunit; Ribonuclease III, bacterial [Medicago truncatula] (GB:ABD32724.1); similar to Os03g0121800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048796.1); similar to Os01g0909200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045148.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF283; (InterPro:IPR005034); contains InterPro domain Ribonuclease III; (InterPro:IPR000999); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) 0.0885647539468568 0.666384260908729 0.519044586020727 1 -0.390038444223778 14.4510418512347 0.0885647539468568 0.173745743822057
AT1G27530_at 10.4606273343844 10.7352839337367 10.7589042317454 10.9105711760669 10.8549936120069 10.543259838693 10.8034883971747 10.8467395589224 10.0842769870266 10.5388588339585 10.4097226961053 10.1861565412923 10.4350223011589 10.4017851296257 10.1893592262916 10.5325312391822 10.4080121362823 10.3156843193231 10.2488159728757 0.087961840758347 0.0827905198053182 0.0904567995024234 0.0864366864757407 0.0851357795527254 0.09917581429935 0.0908972086177952 0.0836364547687946 0.0959693800382337 0.0827905198053182 0.087406444242797 0.0840227412771555 0.0830948169356875 0.0869707859348184 0.0853110033786857 0.0842756761761902 0.110085538499259 0.0956099627145162 0.0870366188160713 1 1|0 -|/ 9562777 9563818 9563389.4 9562580 9563950 - gene protein_coding_gene FALSE TRUE AT1G27530.1 similar to Os10g0205200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064309.1); similar to ubiquitin-like (UBL) post-translational modifier [Dictyostelium discoideum AX4] (GB:XP_001134517.1); contains domain UBC-like (SSF54495); contains domain FAMILY NOT NAMED (PTHR12921) 0.0622655046387968 0.666016971577531 0.519270447172761 1 -0.390275854418768 21.0644509086469 0.0622655046387968 0.0769047834721218
AT3G05920_at 2.71483905673997 2.81221449445388 2.86081762543918 2.96643224148788 2.34154690845374 2.38800277385038 2.66160620826758 2.70389121140590 3.23024019272746 2.64706492223808 2.91368518486384 3.09761293910950 2.89060089640169 2.64005088941432 3.07662060001708 3.18589876407468 3.16496372307901 3.20521759307149 3.26675680260186 0.193078185168618 0.199165982789318 0.206003628101035 0.196229098240511 0.206337990382159 0.197636961831760 0.197238141544828 0.193078185168618 0.209821705705138 0.202110269739318 0.197591281611880 0.198663517267783 0.199507171630291 0.193078185168618 0.198024178920048 0.200971544068314 0.195835043253369 0.197956269197887 0.199823886594699 3 3 - 1769001 1769379 1769136.636 1768796 1769592 - gene protein_coding_gene FALSE TRUE AT3G05920.1 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G26690.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO62335.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.0550635854221121 -0.665948034553161 0.519312845815614 1 -0.390320400895009 5.71609479648385 -0.0550635854221121 0.0271329580781135
AT3G03620_at 1.53589220152242 1.95312968676034 2.04883962015963 2.64579823480096 1.64592641252917 1.68586531784500 1.39435709872502 1.75391984482311 2.31703861856892 2.12169207949208 1.24564045722947 1.76007472264867 1.51908404029034 1.78924114933163 1.24556616377486 2.13977255876512 1.70626144227812 2.08387031180329 2.13175745251218 0.246311176132036 0.245507665096746 0.246824635654852 0.254737775639032 0.24147494074712 0.247645946651866 0.244207981672241 0.240830397192001 0.244171193336656 0.247701476683378 0.252201829522217 0.260196598586086 0.252957949856746 0.266991486944603 0.247341154004785 0.245058261412587 0.252359730016378 0.240859407729818 0.240830397192001 3 3 - 874153 875123 874593.7 873756 876804 - gene protein_coding_gene FALSE TRUE AT3G03620.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G17700.1); similar to Os11g0126100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065623.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE91544.1); similar to Os12g0126000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066047.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.0783455863582835 -0.665795666047429 0.519406564936199 1 -0.390418845051764 3.77114183845716 -0.0783455863582835 0.140731558692800
AT2G28190_at 11.3280817105145 11.4711148037895 11.0777002378028 10.9357292266283 10.7745713424555 10.8105660360656 10.7723787540161 10.8826246770523 10.2228018444383 10.9775970283883 12.3827837334491 10.0249954661521 9.63039904529198 10.8664100611153 13.1853078478518 9.75001463596334 10.0692570053894 11.7849618670303 10.7053092550310 0.0877217256762402 0.0847897160099817 0.087174608199191 0.0904201287597188 0.0847897160099817 0.0921811912803119 0.0847897160099817 0.0875457944589401 0.0904074108428701 0.0867947315448442 0.0858112955488412 0.0855554826875342 0.0889445703419766 0.0889650515677348 0.0850992637575291 0.0861015574092325 0.0930153181936712 0.0855405572782687 0.0847897160099817 2 2|0 +|/ 12021770 12022907 12022339.143 12021575 12023646 + gene protein_coding_gene FALSE TRUE AT2G28190.1 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); copper, zinc superoxide dismutase Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Identical to Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1) (SODCP) [Arabidopsis Thaliana] (GB:O78310;GB:Q9SUJ8); similar to CSD1 (copper/zinc superoxide dismutase 1) [Arabidopsis thaliana] (TAIR:AT1G08830.2); similar to Cu/Zn superoxide dismutase precursor [Helianthus annuus] (GB:CAH06449.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) 0.0563109447780732 0.665421929867866 0.519636485561624 1 -0.39066022584801 21.8050969737404 0.0563109447780732 0.0402380991706329
AT3G46490_at 2.98765910924837 2.84559795472343 2.6984832244306 2.76093083287252 2.02168442488448 2.67502946426323 2.78250437506779 3.01684872266492 2.95450170633370 3.45610128548003 3.85764847589262 4.90425318591615 3.13648503481324 4.49117367299278 4.2688621955469 3.11358923877205 3.21229437693994 3.8495266246476 4.48442905503790 0.234980745826620 0.226997199810805 0.22228377344758 0.236303398308747 0.224582816915207 0.225537329234627 0.224941936011715 0.227998347338619 0.227756228987871 0.22228377344758 0.223261893995080 0.239564207278786 0.229618182252364 0.232879530367982 0.223311293270063 0.224275453179376 0.22228377344758 0.228193915002795 0.223809855335577 3 3|0 +|/ 17127149 17130224 17128796.875 17126614 17130275 + gene protein_coding_gene FALSE TRUE AT3G46490.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G35190.1); similar to Os01g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042255.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81241.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0732844010368985 -0.665256286017321 0.51973840801928 1 -0.390767168682539 6.46654548833977 -0.0732844010368985 0.123082882234785
AT3G24506_at 4.47951701978948 4.17130159770761 4.19030846257895 4.23798818116463 4.37457198389913 4.43263394439742 4.73731130859029 4.90387582262174 4.61460951801949 4.56636301580713 5.14836621726968 5.29604841316317 4.63985555802263 4.76146435895401 5.33114395100906 4.95611059036101 5.00095158230976 4.64933377033772 4.58895143103504 0.195289002433991 0.193570658446975 0.203455359122970 0.201030019706704 0.204039593442553 0.197047865918308 0.202667028899439 0.200252174816602 0.202126074184659 0.195646071187904 0.201107828308491 0.194849623027390 0.194004727254302 0.199489176079459 0.195190770449116 0.193570658446975 0.194968248307717 0.204730588389123 0.193624963468718 3 3|0 -|/ 8928490 8929262 8928899.7 8928176 8929336 - gene protein_coding_gene FALSE TRUE AT3G24506.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17240.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77731.1) 0.059404428028622 0.665014224223155 0.519887372460436 1 -0.390923404542179 9.22238052015979 0.059404428028622 0.0620069689358101
AT3G21200_at 9.45255550941834 9.40043624346215 9.24154901410666 9.32740338023052 9.69284401498473 9.27436537685312 9.48576065615878 9.52790140879933 9.4731093976861 9.62420557335057 9.71717909039422 9.89499918269464 9.6577954866466 9.78921420363067 10.2391476657649 9.9421765353682 9.41492051234938 9.46316957452176 9.57879477973003 0.0963270068067572 0.0959300560469784 0.102775296541721 0.103232058350477 0.0976749582197519 0.098285414205025 0.0996199661594015 0.0989881857347637 0.106935859829191 0.0969556796126126 0.0947135997584401 0.0942191080193488 0.0942191080193488 0.095335168585529 0.0942191080193488 0.0952519065797138 0.108783782269265 0.0970875868707991 0.100330536761670 3 3 + 7436576 7437813 7437371.273 7436032 7438017 + gene protein_coding_gene FALSE TRUE AT3G21200.1 similar to hypothetical protein MtrDRAFT_AC151668g4v1 [Medicago truncatula] (GB:ABE87200.1); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.0617495116249169 0.664909319929599 0.51995193821072 1 -0.390991097573662 19.0871162163401 0.0617495116249169 0.074832407234213
AT1G74490_at 1.79609554744532 1.60625141668298 1.49360249583660 1.6735372473991 1.60827422053117 1.51680480602879 1.71029202312682 2.02831142537949 1.46444338219439 1.90609408425316 1.47445167594137 1.71924969599051 1.83793851130424 1.88376793028161 1.83646286965582 1.21642938376475 1.64407544820919 1.63714507728686 1.32976435062277 0.225045206031585 0.226322430220447 0.225132016821318 0.217018930173703 0.216792443625192 0.216792443625192 0.222471420924416 0.223113045587260 0.223814224419626 0.216792443625192 0.222035966081759 0.223093212016771 0.221489571059518 0.226200128867053 0.216792443625192 0.219268112308437 0.22435060201232 0.219947107789335 0.217412391949990 1 1 - 27998423 27999095 27998682.545 27998361 28000400 - gene protein_coding_gene FALSE TRUE AT1G74490.1 protein kinase, putative similar to APK2B (PROTEIN KINASE 2B), kinase [Arabidopsis thaliana] (TAIR:AT2G02800.2); similar to Protein kinase [Medicago truncatula] (GB:ABD32991.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0613800545061091 -0.664789440179906 0.520025726734171 1 -0.39106844204581 3.29062482100932 -0.0613800545061091 0.0729954957628342
AT2G48060_at 1.81524915724028 1.887429021872 2.15373305544816 2.10904703133179 2.04956641790715 1.78708588426834 1.70998330684092 1.72752825808472 2.14054244580171 1.80495424948361 1.85170481842300 1.78358099849064 1.69785886462282 1.74818761062609 1.77654762392653 1.86612354892109 1.80450178111437 2.28046351282162 1.98408282434265 0.220373892074385 0.218627593251788 0.225930450299104 0.223498052212843 0.225997711751258 0.218627593251788 0.224053253377167 0.225517675931119 0.231196180221103 0.226264432038767 0.228930488313785 0.221060614367027 0.225398143060426 0.237983811358527 0.24041006615331 0.22532153046289 0.224136573982198 0.228079485487949 0.21973074259303 2 2 - 19665174 19666419 19665742.455 19665165 19669687 - gene protein_coding_gene FALSE TRUE AT2G48060.1 similar to Os01g0388500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043105.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69280.1) 0.0572026247774964 0.664638851543718 0.520118425971366 1 -0.391165581289995 3.81877656732963 0.0572026247774964 0.0478365881267351
AT3G07450_at 1.18309166230230 0.604705892298666 1.04816978123132 0.783758646035705 0.94757941925229 0.563946511810339 1.30298038102475 0.762303477814087 1.18166135291686 1.63045728953718 1.15509135805380 1.22673635896145 1.23756676371994 1.27394479409884 1.24405295059980 1.57613610536092 1.18504341393514 1.38468680085669 1.16390325299064 0.224495393203374 0.224495393203374 0.229847377367904 0.227372792155815 0.233836178758662 0.226764816217638 0.227496616967649 0.238250506252147 0.227705259306517 0.225472469213842 0.224809784398780 0.229376543490938 0.232650545391407 0.227196148488192 0.22610621763591 0.224495393203374 0.227496068674091 0.235436024849018 0.233414723197917 3 3 - 2383620 2383833 2383730.3 2383616 2383936 - gene protein_coding_gene FALSE TRUE AT3G07450.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G52130.1); similar to 5B protein [Solanum lycopersicum] (GB:CAA80273.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.083670038697054 -0.664440736029489 0.520240396597469 1 -0.391293347682979 2.20494094647779 -0.083670038697054 0.158979609951143
AT2G17120_at 9.69533121908801 9.92912813089523 9.98098244281749 10.0322641159795 8.75459523172337 8.58863044160744 8.00480489261459 8.75563612102288 8.9468546721771 8.25547001331097 8.08078488836508 8.91263675599748 7.47857298448653 8.21446789914714 7.96095344956856 7.91191411453318 7.45589938542053 8.36919768490699 8.13695415203431 0.162486838526632 0.162753377184632 0.165457156619644 0.173494005143824 0.167740871691896 0.175368799870405 0.173286044330131 0.165123383523461 0.174462462211326 0.162888217713188 0.164651804690876 0.164166913562963 0.170630246468023 0.181262385911685 0.1786750647831 0.167677674187435 0.195655169255059 0.168172360016914 0.165031074312702 2 2|0 +|/ 7466770 7467693 7467277.1 7466129 7467901 + gene protein_coding_gene FALSE TRUE AT2G17120.1 peptidoglycan-binding LysM domain-containing protein Identical to LysM domain GPI-anchored protein 2 precursor [Arabidopsis Thaliana] (GB:O23006;GB:Q8L9K9); similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21880.2); similar to Erwinia induced protein 1 [Solanum tuberosum] (GB:AAO32065.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) -0.0777399583720784 -0.66402169175921 0.520498438421207 1 -0.391563477951941 17.4649114117072 -0.0777399583720784 0.139368931925720
AT3G60340_at 8.51609916334657 8.94683533130643 8.47694507220524 8.74800721849771 9.41626531994889 9.02222647574382 8.58378468691632 8.52472759917598 8.6481979511958 8.43013670075306 8.56991693516077 8.61651678017543 8.3629476625659 8.59812289734578 8.1824936523906 8.54239070271933 7.90674786128633 8.39878017279485 8.51154532504455 0.213286334535755 0.203411514353373 0.226602506058564 0.215206531959657 0.210719093907314 0.208773919653798 0.212845257787169 0.199756523635297 0.206855175036585 0.205456127933985 0.211321170869610 0.212430449027099 0.203822588650158 0.205862486381302 0.206683824918403 0.209843187475166 0.222847591316706 0.208752459054059 0.206521256926748 3 3|0 +|/ 22316583 22317338 22317001.889 22315127 22317487 + gene protein_coding_gene FALSE TRUE AT3G60340.1|AT3G60340.2 palmitoyl protein thioesterase family protein similar to palmitoyl protein thioesterase family protein [Arabidopsis thaliana] (TAIR:AT5G47330.1); similar to putative palmitoyl-protein thioesterase [Tropaeolum majus] (GB:AAR92492.1); contains InterPro domain Palmitoyl protein thioesterase; (InterPro:IPR002472) 0.0701394585681672 0.663784783320507 0.520644356796804 1 -0.391716128140965 17.2429611460856 0.0701394585681672 0.111853127107686
AT2G45610_at 1.43717025015730 1.0853009758482 1.26010497633829 0.849268433711534 1.04456990527545 1.12583436523071 1.20112155389330 1.20949712893149 1.12291941332674 0.957456533098065 1.54191418638464 0.942754399613897 1.14253107742156 1.45454574781238 1.55094496855108 1.44684128158015 1.78909173544183 1.21813707461185 1.19172403658569 0.220204952794601 0.218748911784192 0.219144369411290 0.228465584458418 0.218313938392780 0.226874266125291 0.222206336996975 0.220930476447176 0.229326226280139 0.229967474330529 0.215261574855834 0.215964931696849 0.218450175325675 0.220178396527302 0.224166105803441 0.218144772443641 0.221265223546072 0.215936047561347 0.225913414825101 2 2 + 18798991 18799469 18799201.636 18798537 18799660 + gene protein_coding_gene FALSE TRUE AT2G45610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45600.1); similar to CXE carboxylesterase [Malus pumila] (GB:ABB89004.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.065908503760883 0.663719876098242 0.520684339130127 1 -0.391757941915662 2.38988097530529 0.065908503760883 0.0946709791307619
AT3G60860_at 8.6776121809606 8.9147607091774 8.61369346875746 8.70476506910653 8.23924763573122 8.31203202185833 7.69547835262652 7.98565890958185 8.34157040231949 8.42237528016832 8.74419846993448 8.81167717756766 8.20430772184684 8.36163161845728 8.45521613389493 8.48002622323274 8.28419259425664 8.10177831337324 8.61245124753204 0.126423596703280 0.126141804155422 0.125424513697395 0.124135067266108 0.122797269138042 0.126628347427773 0.126988579901625 0.125490943126810 0.140359352695195 0.129666165168925 0.129166218714829 0.131072609402905 0.126381879936196 0.129843681964183 0.131479417877336 0.122797269138042 0.138501392276497 0.143336630992403 0.130067407664454 3 3 + 22501912 22502440 22502212.909 22495779 22502697 + gene protein_coding_gene FALSE TRUE AT3G60860.1 guanine nucleotide exchange family protein similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G35380.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) 0.0603182828369901 0.663604254964151 0.520755565308092 1 -0.391832416734162 16.8374947975969 0.0603182828369901 0.067919443480363
AT1G60400_at 1.10830475533260 1.49092012795494 1.72251241154713 1.81619188330067 1.58285739635749 1.79185855685068 1.41758224262063 1.43410568910832 1.49727000204946 2.16738461152205 1.35382951338634 0.984048322764047 1.24218023292866 1.38339406850275 1.64949622999448 1.35845694756224 1.26536658362902 1.64419242969563 1.88517262418151 0.223737796535478 0.222023080096295 0.230345223352536 0.222023080096295 0.226899755940733 0.228735537225949 0.222023080096295 0.229016568367278 0.228595376762116 0.229296963004015 0.222418358468194 0.226771742815808 0.222023080096295 0.224694681891364 0.222023080096295 0.222023080096295 0.222824738037219 0.238165901789583 0.235667455870883 1 1|0 +|/ 22258685 22259357 22259095 22258070 22259463 + gene protein_coding_gene FALSE TRUE AT1G60400.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G60410.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE93832.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.0620975066332884 -0.663536195934216 0.520797494447383 1 -0.391876249906909 3.15057310970517 -0.0620975066332884 0.0772228929637334
AT2G18320_at 1.36874014823359 1.69257216006249 1.64142517795838 1.68838993056731 1.68412015132605 1.43327523034596 1.14290695197676 1.59338599523462 1.71354140094422 1.98168474037329 1.64063772656797 1.56878677231678 1.42629967833014 1.44665626065145 1.01263401136265 1.19169480312670 1.28459417155159 1.64182068547677 1.40815920472675 0.178064972487092 0.174061971306712 0.178619209133193 0.172826669930253 0.178045942446490 0.177633115011898 0.174390550941287 0.1773353031371 0.193157394607362 0.177491527627839 0.174098860150505 0.175388978638511 0.172826669930253 0.178833463410963 0.185860226664654 0.172832774126603 0.181547323544722 0.184271454461817 0.174292886661627 2 0|2 /|+ 7964427 7964580 7964506.889 7963302 7964613 + gene protein_coding_gene FALSE TRUE AT2G18320.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G19880.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.068543313167929 -0.663511288290385 0.520812839800875 1 -0.391892290555325 3.08198644939036 -0.068543313167929 0.105680645237629
AT4G26840_at 9.90995978645443 9.97390820135515 10.0040903201676 10.0808056972593 10.0642417167350 9.90940313189798 9.8810785486561 10.0156487475866 10.0766392582689 9.99540770050498 10.0285264175014 9.92676809134966 9.77720415592091 9.75806154269821 9.89724227833475 9.88760456663389 9.77296093593918 9.83910056173001 10.0555059069599 0.0773655754852203 0.0736422992486694 0.0713866399425159 0.0727541746109891 0.069871653304903 0.0780326381023488 0.0709768761748368 0.070127544567547 0.081917555903588 0.069871653304903 0.073846467165285 0.069871653304903 0.0748420712727739 0.0717059799721757 0.0741097229620684 0.069871653304903 0.0751659604433711 0.0747466738232577 0.0733045236221131 4 4|0 +|/ 13497501 13498426 13498213.125 13497332 13498736 + gene protein_coding_gene FALSE TRUE AT4G26840.1 SUM1 (SMALL UBIQUITIN-LIKE MODIFIER 1) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. Identical to Ubiquitin-like protein SMT3 (SMT3) [Arabidopsis Thaliana] (GB:P55852;GB:Q9SZ24); similar to SUM2 (SMALL UBIQUITIN-LIKE MODIFIER 2) [Arabidopsis thaliana] (TAIR:AT5G55160.1); similar to Os01g0918300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045207.1); similar to ubiquitin-like protein SMT3 [Phaseolus vulgaris] (GB:AAM21576.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.0560488288229131 -0.663347758727351 0.520913595359983 1 -0.391997590715641 19.9316176141014 -0.0560488288229131 0.0394848305662085
AT2G47060_at 6.70238783287724 6.98760427114879 6.66465058921309 6.46079063319902 7.06956403841755 7.37431596972966 7.72653663928065 7.29159579047672 7.8907201068723 7.92455708660768 8.5974844004933 8.61317866604062 7.80329580842401 8.68190253265033 8.44361897329426 8.603548071394 7.74325992199772 7.98680536594709 8.6759062433962 0.195993473976896 0.191570153290354 0.194679349874431 0.191969414464508 0.193100578980092 0.194716018483148 0.189315894819500 0.191506303565642 0.190762156203668 0.190502099919896 0.186373805745761 0.188458138261233 0.197796939882948 0.188810126820628 0.186376157217284 0.188922407927251 0.197378471518639 0.187513502284863 0.187877919779627 2 2|0 -|/ 19340196 19341026 19340570 19339974 19342044 - gene protein_coding_gene FALSE TRUE AT2G47060.1|AT2G47060.2|AT2G47060.3|AT2G47060.4 serine/threonine protein kinase, putative|kinase similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G62220.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82412.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G62220.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82412.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0696459602839563 -0.66331622429511 0.520933026006289 1 -0.392017893670938 15.2711129854539 -0.0696459602839563 0.110125137971866
AT1G43560_at 9.14688381659169 9.39099776940506 9.1247211581558 9.11269207113974 9.40726567295622 9.06825830987169 9.73775491413215 9.6591570722218 9.49502984107267 9.62716124176426 10.1139611378925 10.1947546667670 9.94323143048364 10.0722588778733 10.2588142789420 10.3061182724680 9.43321757308683 9.55106448850082 9.5458248667230 0.113387611003061 0.111311451464041 0.114016887175161 0.113585223323655 0.115129832417341 0.115280542091768 0.117089609641940 0.116951849666304 0.122875184549679 0.122617784473473 0.115674402230005 0.116897515624426 0.115405172317786 0.110750010047734 0.113682124119403 0.114459005415486 0.118305344519106 0.12193562179724 0.115425835523754 1 1|0 -|/ 16401032 16401355 16401158 16400539 16402318 - gene protein_coding_gene FALSE TRUE AT1G43560.1 ATY2 (Arabidopsis thioredoxin y2); thiol-disulfide exchange intermediate similar to ATY1 (Arabidopsis thioredoxin y1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G76760.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE83162.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) 0.0613540920874918 0.663259029279618 0.520968269083764 1 -0.392054715537879 19.1010578016951 0.0613540920874918 0.0735919782963963
AT1G16440_at 1.88107094575834 1.7517964535967 2.43126281077980 1.70815212693554 1.46171329020175 2.05525130725491 1.55656692093994 1.68273233791312 1.62562385985275 1.44192576347319 1.83635880352445 1.33040492526085 1.52114601002321 1.33811723812206 1.74961040284319 1.70648857058540 1.97899443015109 1.85602645461831 2.00250737261983 0.197145051258036 0.187398627839104 0.187398627839104 0.188476079351772 0.187398627839104 0.194206469079760 0.187873794994303 0.187398627839104 0.197884662344723 0.193442202652140 0.192704888815215 0.188569174382404 0.193382052300264 0.191337424150785 0.191362722328129 0.18938385328446 0.194768055429300 0.191842895243041 0.187398627839104 1 1 + 5617028 5617515 5617291.727 5616259 5617666 + gene protein_coding_gene FALSE TRUE AT1G16440.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79250.1); similar to viroid symptom modulation protein [Lycopersicon esculentum] (GB:AAF66637.1); similar to protein kinase [Solanum berthaultii] (GB:CAA66616.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.08533878749173 0.663152039657363 0.521034198937589 1 -0.392123587112684 3.49339945069234 0.08533878749173 0.164884504430682
AT3G21650_at 7.26509949807582 7.84309716297435 7.33876067203957 7.49267419702065 7.65344387700009 7.90229274224308 7.45281840603032 7.57457175919976 7.38057218277957 7.10900177693266 6.99868772478955 7.32537113876974 6.9143728761404 7.17596845435196 6.64386619652945 7.00828025866013 7.20466950729025 6.88231765871081 7.1805011023267 0.159640545114548 0.154073411956409 0.160664207182263 0.154010797509913 0.15672480538919 0.163008039544691 0.158651355010934 0.15460601130443 0.171373059548168 0.150089275734418 0.156334945880099 0.157666380573023 0.150257894782223 0.151369280631017 0.163455985448177 0.152132968167064 0.164610829386027 0.161262483374575 0.157447261841264 3 3 - 7621692 7622339 7621966.364 7621576 7624083 - gene protein_coding_gene FALSE TRUE AT3G21650.1 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) [Arabidopsis thaliana] (TAIR:AT4G15415.1); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os03g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051871.1); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.0706352308009524 -0.663021478498237 0.521114660850987 1 -0.392207618409871 14.6866198297821 -0.0706352308009524 0.114074440827274
AT3G13150_at 0.787827262268238 0.875830077616847 0.728047869326064 0.792267643607113 0.828965853223698 0.672343099877055 0.853758135779436 0.532917194738397 0.287138599301084 0.507975801674722 0.264049337759898 0.26646476036719 0.590667040758745 0.500122094684662 0.704808293981492 0.278637778136113 0.623486922290524 0.353114812320719 0.1684106472181 0.236693915515025 0.230017356995337 0.236838880928267 0.238876966159395 0.233171087794823 0.236367318895612 0.23512215875051 0.233692992731845 0.240698753735423 0.244229807594377 0.232853187773349 0.231398807820428 0.231525004790781 0.232973308074701 0.229459867372009 0.233351354837396 0.235045870870472 0.235447121784138 0.234085285196325 3 3 - 4228020 4228520 4228230.818 4227747 4229658 - gene protein_coding_gene FALSE TRUE AT3G13150.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G13160.1); similar to Os01g0785700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044469.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD28713.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0596584064402678 0.662867614368308 0.521209493246357 1 -0.392306628414431 1.14341659010563 0.0596584064402678 0.0645979174225651
AT1G53380_at 3.36978852061202 3.46706511608029 3.18526478212875 2.98093872233264 3.52887573053872 3.26113256790219 3.74635417625328 4.37344212512869 3.19869200475637 3.85856052083651 4.2851801700316 4.20853324395232 3.92973575455624 4.67131911408247 4.31764570800644 3.76255359000891 3.35977675245953 3.22860308292279 2.91381586633212 0.206135273921248 0.207945692654041 0.211517283511980 0.207736462968801 0.205343869080999 0.218504356853115 0.207599087022533 0.219006556008021 0.210087268301158 0.214185587192860 0.207861301342119 0.205368514961776 0.208216906201739 0.210256806434899 0.219910908778241 0.204602347763750 0.213602060570223 0.207108774940783 0.221050544058264 1 1 - 19917012 19917565 19917308.273 19916744 19920185 - gene protein_coding_gene FALSE TRUE AT1G53380.1|AT1G53380.2|AT1G53380.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14870.3); similar to Plant protein of unknown function (DUF641), putative [Medicago truncatula] (GB:ABE77500.1); contains InterPro domain Protein of unknown function DUF641, plant; (InterPro:IPR006943) 0.0733097146172709 0.662404568784995 0.521494947333017 1 -0.39260446647054 7.13616166311084 0.0733097146172709 0.124327169113796
AT3G03590_at 3.35152632282321 3.78836652667034 2.92533037192503 3.08161255921032 3.84643206662812 3.54190969218291 3.43239996573656 3.16871288108423 3.24688549343708 3.32951539811913 3.28678272855464 3.22892439023776 3.29327756573871 3.32426761714070 3.06824437373578 3.31842483998319 2.93405671089279 3.52587746198491 3.31823691397665 0.215817886082670 0.207847137377933 0.217834628732855 0.211586295737183 0.210903923735342 0.207443105371821 0.201931171870236 0.204224862192792 0.206544887888501 0.211515388285484 0.201931171870236 0.208245461042576 0.204131633806353 0.201931171870236 0.201931171870236 0.205233143479235 0.207085859360657 0.208640187789176 0.201931171870236 3 3|0 -|/ 865350 866620 866256.4 865190 867015 - gene protein_coding_gene FALSE TRUE AT3G03590.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35605.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.0685804462013587 -0.662304260526865 0.521556796559155 1 -0.392668961148186 6.66488357972151 -0.0685804462013587 0.106329134384333
AT4G30220_at 7.77738004347592 7.97693722718813 7.95621562837352 8.00016703745601 8.09246085482248 7.73014874675228 8.26473477016716 7.8499126816413 7.06340946967946 7.89640504570403 7.84147754664912 8.02629867280068 7.85999162808281 7.41538065892971 7.78978317189557 7.9941709463987 7.92022923982971 7.07625106458289 7.78950602831996 0.156999327308957 0.159916589173916 0.153202572395575 0.155301862756545 0.157280032054467 0.165856386843458 0.161852277348439 0.168298048602026 0.161469496731581 0.159851825675046 0.164287080578890 0.164658668486406 0.160639037443174 0.166517762137513 0.170952122401471 0.153202572395575 0.167613242257341 0.168263792210339 0.160766072841026 4 4|0 -|/ 14803134 14803835 14803551.571 14802956 14804329 - gene protein_coding_gene FALSE TRUE AT4G30220.1 small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative Identical to Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Arabidopsis Thaliana] (GB:Q9SUM2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14285.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE82177.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.0674239522389712 0.66224981587738 0.521590368476692 1 -0.392703963391882 15.6177719807582 0.0674239522389712 0.101661657802917
AT4G27230_at 7.32605730267692 7.35830902150023 7.05826343800344 6.99571565829355 7.88920254537766 7.17055880017527 7.91035496902698 8.3343829416818 8.33819703718485 8.16984803754909 8.7399035291488 8.88761430203689 8.40332957895564 8.4319649774285 8.74253639078101 8.63417858079434 7.65724068606291 8.01324597151068 7.92160791756275 0.172139272871044 0.165878739887972 0.176705397577092 0.185646804239407 0.171075623514307 0.183813441412602 0.174102602055687 0.165878739887972 0.179418907000018 0.16795364006813 0.172108921886287 0.165878739887972 0.170854979770106 0.171878925412011 0.170848335689347 0.165878739887972 0.180444838725687 0.176962205482562 0.170282440233745 4 4|0 -|/ 13637529 13638292 13637989.5 13637345 13638425 - gene protein_coding_gene FALSE TRUE AT4G27230.1 histone H2A, putative Identical to Probable histone H2A.3 (HTA2) [Arabidopsis Thaliana] (GB:O81826;GB:Q8L8Z9); similar to RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5), DNA binding [Arabidopsis thaliana] (TAIR:AT5G54640.1); similar to Protein H2A.7 (wcH2A-4) (wcH2A-10) (GB:Q43312); similar to Os08g0427700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061844.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0791534301340244 -0.662245381433487 0.521593102920436 1 -0.392706814161653 15.7963402926864 -0.0791534301340244 0.144912068799844
AT1G42250_at 1.15080584003002 0.98868690870627 0.910650604310459 0.77384769010382 0.90069361919732 1.21818041981725 0.785039696266264 1.28265517437285 1.43414176737918 1.35273198516067 0.999315236491632 1.30041965926411 1.76996130838023 1.30497107367442 1.41884747556741 0.987476518509521 0.990525585772313 1.08351427717696 1.02061176065091 0.195093096676500 0.189088656502560 0.187787544290730 0.188823854538888 0.189293955943793 0.188801527799436 0.187787544290730 0.190814476788080 0.197065297041507 0.197865892659700 0.188596990316922 0.192600127637147 0.192172537769476 0.191531693269417 0.190012502128579 0.191479305294021 0.194279887169229 0.194107558367609 0.187787544290730 1 1 + 15779334 15779781 15779386.778 15779286 15779967 + gene protein_coding_gene FALSE TRUE AT1G42250.1 replication protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05087.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0691183836811564 -0.662117060552003 0.521672234019868 1 -0.392789300193078 2.25184035889294 -0.0691183836811564 0.108544958826271
AT1G36370_at 5.12393698638757 4.99444154089383 4.88368639548241 4.70942213932172 6.02358613957424 5.23760476862091 6.29137041425398 5.93744336460921 3.90909355831221 5.04656211075158 5.5316343235444 4.47672727323067 5.3677904090861 5.44140300969507 4.91192228402757 5.02228746291482 5.45946247741858 3.66988759097655 4.3892844443941 0.245843858084611 0.263029368270922 0.250573976215186 0.250739968654741 0.245843858084611 0.26057136036859 0.245861868516351 0.253435767924359 0.254066705655880 0.245843858084611 0.249111429159864 0.247145530435913 0.249241214689523 0.247285107192878 0.245843858084611 0.24746441849645 0.275310073324858 0.263652620654948 0.250981686226419 1 1 - 13697462 13698197 13697879.909 13697254 13699851 - gene protein_coding_gene FALSE TRUE AT1G36370.1 SHM7 (serine hydroxymethyltransferase 7); glycine hydroxymethyltransferase Encodes a putative serine hydroxymethyltransferase. similar to SHM6 (serine hydroxymethyltransferase 6), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT1G22020.1); similar to Os01g0874900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044960.1); similar to Os05g0429000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055615.1); similar to Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97575.2); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) 0.0818013834613832 0.662079374883114 0.521695474823785 1 -0.392813522159392 10.1169128311502 0.0818013834613832 0.153830720623945
AT3G23720_at 1.86128131282516 2.04712656043434 2.22374196019673 2.28053359383178 1.53062760808568 1.94639327797786 1.62556557836819 2.05791072867767 2.13185474086919 2.29869618888685 2.48631384490764 2.3361363630888 2.03297017063914 2.37112467765648 2.25016475218145 2.05522907639135 2.04421155570633 2.22295251059781 2.12062262063284 0.159764168224549 0.153857922016849 0.157093593177860 0.162306907464418 0.159338713910970 0.153523026279482 0.155108424654086 0.158468580924062 0.153523026279482 0.153523026279482 0.154030072980764 0.161502886894053 0.157785073814177 0.165775512730992 0.156196373355247 0.156993788508006 0.164431557096964 0.159205525136202 0.168600808141966 3 3 + 8537394 8537509 8537461.636 8537372 8537617 + gene protein_coding_gene FALSE TRUE AT3G23720.1 unknown protein 0.0692582085232532 0.662076540382337 0.52169722288893 1 -0.392815343946252 4.15095377039589 0.0692582085232532 0.109113287125782
AT4G29940_at 3.35941093546897 3.52671795399009 3.47213394742815 3.44657749577369 3.86848099519626 3.18535459142901 3.31309491987028 3.75685032901810 3.76031043583221 4.04958562984609 3.86565666565059 4.21491960066969 4.15393316106783 4.13703154465577 3.53581559921152 3.58913994551984 3.68144398580068 3.82883004494205 4.30311868739376 0.169870226591841 0.165575111191187 0.166616205496594 0.175051105639150 0.174644530276859 0.170209069018262 0.178810591726903 0.166630765998117 0.176438319593135 0.165575111191187 0.170596442967516 0.165575111191187 0.166639309860262 0.175775055282490 0.168710463569786 0.173180098770619 0.17355671038158 0.169471799188464 0.175044464298744 4 0|4 /|- 14648366 14649273 14648619 14648145 14653385 - gene protein_coding_gene FALSE TRUE AT4G29940.1 PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A); transcription factor Homeodomain protein (PRHA). Expression of the gene differs in various vegetative and floral plant tissues and is positively influenced by the phytohormone auxin. It is often associated with regions of developing vascular tissue. The prha promoter is highly responsive to the synthetic auxin, naphthalene acetic acid, in transient assays using tobacco protoplasts. The PRHA protein has the capacity to bind to TAATTG core sequence elements but requires additional adjacent bases for high-affinity binding. Identical to Pathogenesis-related homeodomain protein (PRHA) (PRH) [Arabidopsis Thaliana] (GB:P48785); similar to homeobox protein (HAT 3.1) [Arabidopsis thaliana] (TAIR:AT3G19510.1); similar to Zinc finger, RING-type; Zinc finger, FYVE/PHD-type; Homeodomain-related [Medicago truncatula] (GB:ABE84579.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.078853521523846 -0.662029760146082 0.521726073228606 1 -0.392845409449511 7.44783659742037 -0.078853521523846 0.143981617292768
AT1G17060_at 1.06264247234895 1.1537939412734 1.16216952610714 0.979741507530603 1.10357026436299 1.39420896205863 0.866837269640407 0.883093101342323 1.35933978831749 0.895433950488202 1.10230714582807 1.4297572589029 1.18314968769155 1.34250726713416 0.423794952595958 0.836016392187937 1.14851682228042 1.75779083942916 1.35505083537761 0.194349595274686 0.189277746924194 0.198284216954019 0.19804511425135 0.192429932629282 0.199006936109821 0.189277746924194 0.191590033779013 0.204947340347791 0.199743694052151 0.196466462915842 0.195684257331030 0.195681909314842 0.19167909725801 0.189277746924194 0.193291746555827 0.199367314953367 0.190671464074485 0.190204303028980 1 1|0 -|/ 5832351 5832904 5832613 5832090 5835449 - gene protein_coding_gene FALSE TRUE AT1G17060.1 CYP72C1 (cytochrome P450, family 72, subfamily C, polypeptide 1); oxygen binding Encodes a protein with similarity to other cytochrome P450's and is a homolog of BAS1. Over expression causes a dwarf phenotype resembling brassinolide resistant mutants. Double mutant analysis of sob7/bas1 loss of function mutants suggests these genes have redundant functions in light responsiveness. SOB7 may function in metabolizing brassinolides. Expressed in leaf, root, stem and silique but expression highest in flower and cauline leaves. Dominant overexpressing plants have dwarf phenotype, short siliques/seeds, rounded dark green leaves and short hypocotyls in light and dark. Loss of function alleles result in plants with long hypocotyls. similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) 0.0590180282793695 0.661630105991012 0.521972586443823 1 -0.393102186459212 2.25388458249174 0.0590180282793695 0.0615071617713683
AT1G51300_at 0.894961884427983 1.41405784292587 1.17274632696208 1.01309969064527 0.740541938846181 0.902167172307846 0.702115433654241 0.860560047001564 1.14322590236771 1.28567804697548 1.14012960573066 1.38413903450501 1.22887513035262 1.54081636708026 1.06827931230798 1.22371782486614 1.71152592400051 1.99939415165581 1.37084416978140 0.18867663149998 0.188704412517222 0.198611130310260 0.189668193129707 0.196547252303238 0.190736322610331 0.189985998103575 0.189251392013452 0.190128090985716 0.193088966912283 0.185396321399711 0.192608589279985 0.198782593128925 0.186639544444145 0.194014355364238 0.189890118413548 0.192759554564022 0.190413825760495 0.191444440255387 1 1 - 19017934 19019493 19018795.273 19017928 19019771 - gene protein_coding_gene FALSE TRUE AT1G51300.1 acyl-protein thioesterase-related similar to phospholipase/carboxylesterase family protein [Arabidopsis thaliana] (TAIR:AT3G15650.1); similar to Phospholipase/Carboxylesterase [Medicago truncatula] (GB:ABE78991.1); similar to Os04g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052156.1); similar to Os01g0612500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043556.1); contains InterPro domain Phospholipase/Carboxylesterase; (InterPro:IPR003140) 0.0673709713127195 0.661352736068108 0.522143712974174 1 -0.393280312518793 2.30187747969 0.0673709713127195 0.101819557425925
AT1G11900_at 3.28512384097494 3.95186820718885 3.57119131994479 3.37101975493827 3.60890306006858 3.40849232345441 3.56691166492227 3.5713170073866 3.01561776039131 3.02456201265478 3.29811838492371 3.25689050212257 2.82877817247329 3.17508453678105 3.2390476790162 3.03263394257173 3.12049733328084 2.96350731595979 3.43187583815669 0.210438882427462 0.209394241183708 0.207007473401147 0.198857483931423 0.203414677100404 0.198857483931423 0.204591544081020 0.199559832166504 0.211188947699198 0.201279004184161 0.200302809030283 0.199951648187272 0.200882882281314 0.198857483931423 0.201140843723039 0.198857483931423 0.212362912385419 0.204726524997609 0.202585623838045 1 1 - 4013203 4013739 4013463 4013120 4014680 - gene protein_coding_gene FALSE TRUE AT1G11900.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G51965.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56871.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0734678512632143 -0.661263955239407 0.522198494279317 1 -0.39333731280912 6.67768919925588 -0.0734678512632143 0.125366199224154
AT1G43660_at 1.27076066609136 1.28464721204464 1.80667017107862 1.69754995802242 1.3007742082454 1.92194963870575 1.78636121412564 1.77164679255954 1.97333784494682 2.02564292398421 1.63875310737171 1.72520000654951 1.73540248823844 1.57038154179287 1.68835334792347 1.57799128036692 1.93525688753354 1.94781866258687 2.05842780089953 0.188682850645363 0.189989012942845 0.189340673694152 0.196292526965947 0.188682850645363 0.197146684128306 0.188682850645363 0.191684443025382 0.193055631932011 0.190643615625956 0.190749279794838 0.194430006050765 0.190265581567765 0.194816045434586 0.200406127928657 0.188682850645363 0.194968830964553 0.189031016392105 0.190836300167381 1 1 + 16452861 16453052 16452965.273 16452800 16453084 + gene protein_coding_gene FALSE TRUE AT1G43660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48290.1); similar to Transposon MuDR mudrA-like protein, putative [Solanum demissum] (GB:AAT39304.2); similar to Os06g0502800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057710.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABF95707.1) -0.0691797509201743 -0.661117598321835 0.522288809693161 1 -0.393431263575015 3.47831041022864 -0.0691797509201743 0.109199479364006
AT4G00231_at 4.08093572485707 4.20637406283122 3.87990641685321 4.21140493052069 4.09990635201951 4.38695716851089 3.88346372880105 4.01489665232392 4.51792430623806 4.29230424045841 4.6036813903095 4.4459884241988 4.00980622499493 4.24530765968802 4.50453402304629 4.46839676819664 4.73508395532161 4.25945300954897 4.33409683246628 0.198117671889689 0.199226371872055 0.196034355683236 0.192304724478356 0.192836328591567 0.204694751192285 0.191116527830592 0.192969782111303 0.201275329868050 0.193462820564376 0.192667790328838 0.191650615177621 0.198235844789228 0.193100687793025 0.194251523636795 0.189532602211389 0.198523113941361 0.193398275087309 0.193477190884676 4 4 + 98465 99017 98726.909 97499 99353 + gene protein_coding_gene FALSE TRUE AT4G00231.1 MEE50 (maternal effect embryo arrest 50); binding similar to unnamed protein product [Mus musculus] (GB:BAE42002.1); similar to Os03g0118900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048775.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0628579068158048 0.660877734978702 0.522436846839814 1 -0.393585197600144 8.49071724207337 0.0628579068158048 0.0821415270195455
AT3G44570_at 0.174708503124879 -0.140371830329021 0.145238375912949 -0.0104980397466067 0.32635889365903 0.412120241981337 0.170093016873213 0.244149112910909 0.611072378020232 0.127815026601344 0.198630334271171 0.00582577584974872 0.589301764087886 0.47835499479742 0.565937235581362 0.0516008088867638 0.627107994063271 -0.234173111765288 0.0797609957105046 0.226027135555524 0.215866044509245 0.214041100998504 0.215459070059902 0.224242830797555 0.215228943421454 0.219447871226647 0.213766271694364 0.22959597027791 0.214271914672342 0.2123829251267 0.217209453407998 0.21831306196844 0.214161547543069 0.226387446794492 0.214665028408997 0.234313710880799 0.217436957534445 0.219788836757474 3 3|0 +|/ 16170078 16170786 16170545 16169891 16170822 + gene protein_coding_gene FALSE TRUE AT3G44570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30820.1); similar to hypothetical protein 27.t00034 [Brassica oleracea] (GB:ABD65055.1); similar to hypothetical protein 26.t00034 [Brassica oleracea] (GB:ABD65011.1) 0.0593002958337653 0.660222294110622 0.522841492786621 1 -0.394005570241040 0.444327796589454 0.0593002958337653 0.0639058707621303
AT1G24470_at 6.79551271012151 7.04829462509367 7.33088622910312 6.68073311622437 8.24575372340784 7.54977357996578 7.84379580674355 7.67419856794113 7.94184325006748 7.07926830091178 7.77856002265163 7.01456021628928 7.38036054015487 8.13870418985554 6.53403206817501 6.53388824291763 7.45641738254147 7.96217355916016 6.83738585166262 0.170534188446266 0.170717324310797 0.178895412192269 0.176335876246615 0.180750861664760 0.181606528542666 0.175089148602085 0.171577092271294 0.177662812198047 0.173405791828320 0.172506267225468 0.174805217091681 0.173955841589203 0.172127676386192 0.183233967048117 0.176543069403133 0.180914914271838 0.17763489464302 0.175272726890146 1 1|0 +|/ 8674999 8676229 8675602.1 8674044 8676396 + gene protein_coding_gene FALSE TRUE AT1G24470.1 short-chain dehydrogenase/reductase (SDR) family protein similar to b-keto acyl reductase, putative (GLOSSY8) [Arabidopsis thaliana] (TAIR:AT1G67730.1); similar to 3-ketoacyl-CoA reductase 2 [Gossypium hirsutum] (GB:AAY23355.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.087503730768941 0.660100870694853 0.522916475486866 1 -0.394083404193023 14.7141199591245 0.087503730768941 0.173032974392983
AT3G27020_at 10.2884818828014 10.3545656029031 10.6045437921854 10.7492739023262 10.8727087248784 10.7014466528111 10.5976800778004 10.7483223301152 10.3281603356633 10.4607967752471 10.3100945824392 9.99714464938636 10.5648971565423 10.2854696616632 10.1315993980248 10.4912816853868 10.1990512913280 10.0987835071441 10.3537044307876 0.0825594796384463 0.0812349051767368 0.0840027790979998 0.0805765717372643 0.0806014549336185 0.093565914205512 0.081320336413008 0.085104017936937 0.0965555583426144 0.0803682779888968 0.0805032567640117 0.08235251951144 0.0803682779888968 0.0837546551496436 0.0803682779888968 0.0816739943982266 0.0925873915945744 0.0877149108121965 0.0825233074232582 3 3 - 9962869 9963362 9963129.182 9962556 9965834 - gene protein_coding_gene FALSE TRUE AT3G27020.1 YSL6 (YELLOW STRIPE LIKE 6); oligopeptide transporter Arabidopsis thaliana metal-nicotianamine transporter YSL6 similar to YSL4 (YELLOW STRIPE LIKE 4), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G41000.1); similar to YSL5 (YELLOW STRIPE LIKE 5), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G17650.1); similar to YSL7 (YELLOW STRIPE LIKE 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G65730.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE91885.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE91886.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE44205.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) 0.0568169277842894 0.659703120236738 0.523162142835238 1 -0.394338275329730 20.9349665817553 0.0568169277842894 0.0481258916606695
AT1G62320_at 0.915874205836137 0.365803816033083 0.982733205015665 0.807013203808772 0.787101684034557 0.806693948918896 1.20072229737575 1.15755921537154 1.11579032299205 1.16667182166990 1.21250267687187 0.818211410727518 0.901363174412512 1.16519522250961 0.788798122279609 0.850519915764455 1.36821401803988 0.838070962242259 0.904765105649922 0.215034174554670 0.213588121719986 0.215028719749482 0.215946658761176 0.211380647228914 0.215600767645759 0.213409012592511 0.213033673033533 0.223696508632872 0.211917090978060 0.221245928117724 0.211380647228914 0.213185246088268 0.214511816807180 0.214728435115144 0.211683984476301 0.214535076068940 0.212711456155734 0.219504985509541 1 0|1 /|- 23045366 23045905 23045605.6 23045333 23048520 - gene protein_coding_gene FALSE TRUE AT1G62320.1 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G04340.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) -0.0668270093954899 -0.659688024438854 0.523171467965883 1 -0.394347945662255 1.90557195769593 -0.0668270093954899 0.100267499019768
AT2G47500_at 2.01179967203999 1.61853711740757 2.08818180560802 2.54449109823735 1.54103888210383 1.92733897226179 2.24336022860731 2.40665023778053 2.74289846480599 3.09264798921334 3.11991787670154 3.30593001134908 3.16802622066016 2.71613216774358 3.71527452845123 2.81988753860641 3.50203506397587 3.38241408443437 3.23643411117179 0.212780464429239 0.214353340011635 0.210702556517969 0.214355836031856 0.217800787126635 0.215707801532631 0.211937337989875 0.213887587548704 0.211623376434774 0.217134791994061 0.211689148098219 0.214549642508297 0.211746005236317 0.20994159331333 0.210123906510686 0.209584719194096 0.216427368529263 0.213529792313405 0.214760014073292 2 2 + 19504063 19504650 19504410.455 19500065 19505226 + gene protein_coding_gene FALSE TRUE AT2G47500.1 microtubule motor similar to ATK4 (ARABIDOPSIS THALIANA KINESIN 4), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G27000.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G44730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT1G09170.1); similar to Kinesin-4, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95490.1); similar to Calponin-like actin-binding; Kinesin, motor re (GB:ABE84966.1); similar to kinesin [Gossypium hirsutum] (GB:AAW03152.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) 0.0736922701769022 0.65919159922941 0.523478179139241 1 -0.394665841378133 5.16777260586612 0.0736922701769022 0.127023183506999
AT4G09960_at 1.11927966515673 1.32115175438159 0.986397686403379 1.19815362419806 1.16781112326732 1.18794828698311 1.02226575646629 1.29193956567641 0.954604398626638 1.12295003421729 1.27118663341130 1.14876222399200 1.24781164855746 1.03584243130794 1.28141761193098 1.12770769074002 1.41304848206784 1.35560613014638 1.82774330140419 0.213018078648571 0.215923859097777 0.232421186791017 0.218130527107782 0.222236030573419 0.217355270886898 0.218471267030912 0.218026048691481 0.222110202167710 0.22009822086984 0.21838270179653 0.217478748850631 0.221637013345355 0.213762252200224 0.217862116850551 0.213018078648571 0.219843010656174 0.221864699483900 0.219446168375465 4 4|0 -|/ 6236736 6239280 6237537.9 6236470 6240806 - gene protein_coding_gene FALSE TRUE AT4G09960.1|AT4G09960.2|AT4G09960.3 STK (SEEDSTICK); transcription factor|STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules Identical to Agamous-like MADS-box protein AGL11 (AGL11) [Arabidopsis Thaliana] (GB:Q38836;GB:Q8VZ36); similar to SHP2 (SHATTERPROOF 2), transcription factor [Arabidopsis thaliana] (TAIR:AT2G42830.1); similar to MADS box protein GHMADS-2 [Gossypium hirsutum] (GB:AAN15183.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.0600872800520432 -0.659008284138271 0.523591465118539 1 -0.394783175322348 2.43033781678425 -0.0600872800520432 0.068944940344575
AT4G12540_at 2.4730817065717 2.76185105702162 2.93124735302517 2.60480821797386 2.14463428196313 3.16477841439519 2.49821693752501 2.74106459106566 2.68271694176222 2.53360221429305 2.64124135318716 2.41859799206478 2.89503253756229 2.07836799081517 2.78689302325487 2.26655394833375 2.78613563229195 2.83492552229394 2.25776760215158 0.210271648333071 0.212512489324929 0.213020085395187 0.214199329735475 0.214972654471387 0.216111170126333 0.220453576229057 0.218090432529033 0.214789099457044 0.220481932973381 0.214685549129996 0.209258649452847 0.210260060931922 0.212117724657120 0.218259294777985 0.213973578736362 0.216058925304089 0.21142913250206 0.212778286619777 4 4 - 7429968 7430531 7430365.818 7429873 7431599 - gene protein_coding_gene FALSE TRUE AT4G12540.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47078.1) 0.0949598705166063 0.659003969882038 0.523594131437333 1 -0.394785936374871 5.20487569629822 0.0949598705166063 0.19652330839289
AT3G55660_at 1.62200777887598 1.65963136924539 1.80163750068814 1.76451448676994 1.37727192177046 1.94943310896696 1.81717085631203 1.81598887281404 2.01823574650625 1.71855078454048 2.02185272967354 1.73404265832785 1.52577604062312 1.80888766171559 1.92438884511095 1.13874010328519 1.48381409599213 1.76931337440035 1.67366733534595 0.222349582923150 0.222349582923150 0.222349582923150 0.231978759669219 0.224456435739421 0.233809434348047 0.225641344589619 0.226591080379817 0.234140000328597 0.228257523516697 0.223697430122673 0.226465421527263 0.222349582923150 0.232782612407795 0.222349582923150 0.225838594427665 0.22902420328229 0.235106890219634 0.222349582923150 3 3 - 20660035 20660580 20660190.545 20659921 20662367 - gene protein_coding_gene FALSE TRUE AT3G55660.1 ATROPGEF6/ROPGEF6 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF5/ROPGEF5 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT5G05940.1); similar to Os01g0849100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044808.1); similar to Os05g0454200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055718.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13489.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.0665590741263974 -0.659003791864106 0.523594241457062 1 -0.394786050303043 3.46562526731636 -0.0665590741263974 0.0994369559255773
AT1G51820_at 2.33035259189059 2.23900206071898 1.66489600203079 1.78053871099320 1.52032428018831 1.88641387719068 1.36452314677588 1.58371989628341 2.13944674055328 1.6848378229096 1.48874947966563 1.48914015692978 1.84800032328918 1.84643769673663 2.09452628956641 2.07704539650513 1.62538335051429 1.51133112215115 1.29047900346799 0.201597795679606 0.210931912655965 0.204268814739397 0.204413747283813 0.206064351160874 0.202307370651556 0.203810275459894 0.203577186746548 0.203379052307487 0.204299689246153 0.205211211360587 0.210853374800166 0.211261500721456 0.200824515994205 0.206552510938050 0.200824515994205 0.207396003812620 0.215291472391882 0.203350582039327 1 1|0 -|/ 19241078 19241667 19241320.3 19241076 19245552 - gene protein_coding_gene FALSE TRUE AT1G51820.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51805.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90328.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0618503341868263 -0.658967035490749 0.523616958145279 1 -0.39480957309475 3.52247027870735 -0.0618503341868263 0.0781216679732696
AT3G09100_at 7.59966535760616 8.07164813577697 7.5272452492266 8.228367543316 8.42614031205336 8.01396036329673 7.85247088521731 7.94718744402834 6.69817562586608 6.62155966715379 6.2854987073851 6.44732909920607 6.97599135082165 7.10378997088317 6.48476165627994 7.12958256639421 6.73384672685649 6.87103151972335 6.97946388612529 0.240709499521709 0.232945780207967 0.246514751101454 0.232945780207967 0.238160544424916 0.237949377709261 0.234538319960721 0.236712131465374 0.241823186413998 0.238925307555881 0.233999362556979 0.236311851136459 0.239999562064598 0.246703335123173 0.240428470249262 0.232945780207967 0.246072982918684 0.243295165478636 0.236897240587093 3 3|0 -|/ 2788765 2789517 2789140.5 2787986 2793537 - gene protein_coding_gene FALSE TRUE AT3G09100.1|AT3G09100.2 mRNA capping enzyme family protein similar to mRNA guanylyltransferase [Arabidopsis thaliana] (TAIR:AT5G01290.1); similar to mRNA capping enzyme, C-terminal domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96062.1); similar to Os12g0193200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066345.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain mRNA capping enzyme; (InterPro:IPR001339)|similar to mRNA guanylyltransferase [Arabidopsis thaliana] (TAIR:AT5G01290.1); similar to mRNA capping enzyme family protein [Arabidopsis thaliana] (TAIR:AT5G28210.1); similar to mRNA capping enzyme, C-terminal domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96062.1); similar to mRNA capping enzyme, C-terminal domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92070.1); similar to Os12g0193200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066345.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain ATP dependent DNA ligase, central; (InterPro:IPR012310); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain mRNA capping enzyme; (InterPro:IPR001339) 0.0843823173140057 0.658925543060123 0.523642602572088 1 -0.394836125350822 14.7185249993529 0.0843823173140057 0.163553023500584
AT3G61350_at 3.76233549051754 4.24470741299511 3.97577334335699 3.79270285252258 4.36862828293184 3.9105447896496 3.37678283412071 4.21114820801149 4.37429910919156 3.63547342347158 3.96661809359618 4.38703362783352 3.90034282290986 4.4429196058681 3.85995006947958 4.07986017812659 4.33185240737272 4.07638230340911 4.17008019747272 0.216240283444822 0.214491076572584 0.206380041381157 0.214027439248647 0.216183977018356 0.211870210999167 0.208731418751661 0.207500536673700 0.214704157250688 0.217408543295552 0.206380041381157 0.206380041381157 0.207542510550566 0.214268205540864 0.216860784786036 0.20781520806616 0.219959130956941 0.216787893653441 0.209552769433165 3 3 + 22714754 22715210 22715025.091 22713661 22715456 + gene protein_coding_gene FALSE TRUE AT3G61350.1 SKIP4 (SKP1 INTERACTING PARTNER 4) Encodes an SKP1 interacting partner (SKIP4). similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55270.1); similar to putative SKP1 interacting partner [Oryza sativa (japonica cultivar-group)] (GB:BAD07929.1); similar to Os02g0114600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045669.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.0919189046166057 0.658734485724646 0.523760695196014 1 -0.394958368899756 8.0506133010731 0.0919189046166057 0.187363427427876
AT3G57160_at 3.0146830168038 3.17602668332401 3.23476662687814 2.93420299632394 3.00520938196796 2.93042950499636 2.07648910040192 3.04613131397466 3.12665840334887 2.55120016532868 2.98749679742232 2.91067919783134 2.61086601109373 2.75900422695029 2.75823172222987 2.66065049664925 2.53138350881034 3.20560821285577 2.79053602226002 0.212021041611854 0.211138215894483 0.21042198819102 0.221579538694039 0.204589530781432 0.207609463705675 0.209974897531858 0.211059022340876 0.216134962000211 0.208516057911195 0.208618272691403 0.208393662166290 0.205508565999687 0.208899284700134 0.203329456548180 0.214835902534045 0.215097471648016 0.209167985735611 0.211310109383731 3 0|3 /|- 21168749 21169347 21168971.667 21168589 21169795 - gene protein_coding_gene FALSE TRUE AT3G57160.1 unknown protein 0.0890057118333406 0.658675956466412 0.523796875279562 1 -0.394995810962597 5.74013643743862 0.0890057118333406 0.178352820402066
AT4G39010_at 2.14347154985449 2.36268203178732 2.09977940732283 2.30477152859045 1.9435808851515 2.06876067427980 2.41965646951402 2.12123181602691 2.40085198841162 2.62375351696017 2.5866660502245 2.81589916075587 2.15060278796036 2.51936901943412 2.57533223157835 2.55901217034444 2.69714288747361 2.1522662954401 2.39269887667142 0.170347288865728 0.165422289301221 0.169592919888260 0.166478013172346 0.165468905195368 0.166526220218383 0.163804948503097 0.167085516225607 0.168398990983971 0.175063205247770 0.169871326572788 0.166928457218217 0.169258544974717 0.170990517760656 0.176190704427373 0.164251716460512 0.166974248282434 0.168343096792272 0.168412820646779 4 4 - 18176159 18176792 18176458.909 18175896 18179177 - gene protein_coding_gene FALSE TRUE AT4G39010.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 24 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 24) [Arabidopsis Thaliana] (GB:Q93YQ7;GB:Q9SVJ2); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT4G39000.1); similar to Os09g0530200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063747.1); similar to endo-1,4-beta-glucanase precursor [Glycine max] (GB:ABC70310.1); similar to putative endo-1,4-beta-glucanase [Eucalyptus globulus] (GB:AAZ08323.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -0.0614679057862608 -0.658600356967223 0.523843609565124 1 -0.395044168602055 4.67272735502383 -0.0614679057862608 0.0763801139473866
AT3G42630_at 4.90335547707193 5.96598670063347 4.70758490482435 5.07311883685139 6.28964788767944 5.80021823099579 6.22219285249185 5.76321434673609 4.06309416384408 4.49957501414418 4.3503075738205 4.67842490722699 4.16730448442419 4.56644446521716 4.50606217343771 4.93938553787665 4.65291971369594 4.77274346016523 5.06657404378838 0.233045789183794 0.224510937955325 0.23123357451209 0.239215533801939 0.224510937955325 0.231530745019985 0.234467103992289 0.228888992182439 0.243652982754079 0.228325810883549 0.233537358944442 0.228698806700036 0.232282642185016 0.236076601205209 0.229004718350142 0.228510249996922 0.231072050109395 0.230142430448382 0.228875741981109 3 3 + 14734049 14734517 14734308.091 14733236 14734843 + gene protein_coding_gene FALSE TRUE AT3G42630.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G14190.1); similar to pentatricopeptide repeat protein [Capsella rubella] (GB:ABA18107.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.104963456794047 -0.658278614605099 0.524042532380971 1 -0.395249915926945 10.1518049613648 -0.104963456794047 0.226496944819871
AT4G32140_at 5.40717366121411 5.46328641850523 5.39085573733185 5.47245827669115 5.57405326997603 5.11824541034302 5.02471232633249 5.25632795683283 5.37406229441869 4.95322505192765 4.85038180243089 5.03998509371815 4.67033133930009 5.32486540781764 4.42873896571272 4.97272505302049 4.81727782320720 4.79238267503103 4.94799954453272 0.221842813635838 0.217786009528707 0.229388120871105 0.218950920637849 0.228818181313890 0.232771526368287 0.221535745211805 0.230380260030975 0.229419320347067 0.217411705447305 0.221302621532701 0.219449053479115 0.228344434922029 0.222960738395318 0.222922590243362 0.217411705447305 0.224768537920388 0.219458605145624 0.231399116009618 4 4|0 -|/ 15523189 15523929 15523443.5 15522890 15525454 - gene protein_coding_gene FALSE TRUE AT4G32140.1 similar to membrane protein [Arabidopsis thaliana] (TAIR:AT3G07080.1); similar to H0811D08.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86111.1); similar to Os04g0645600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054066.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.0643240970327822 -0.65815506715612 0.52411892949963 1 -0.395328897350017 10.3153132906481 -0.0643240970327822 0.0901238086966733
AT3G61220_at 9.2908466222712 9.39157819769839 10.0191911008559 10.1749861115235 9.8204777964146 9.45828570193886 10.474979069113 10.4557897239245 9.25216229326192 10.1230282931679 9.83720324805103 9.65681148394781 10.1560380226583 9.94016091673915 9.36145662614371 10.1260368177737 10.1633915612198 10.0703201297735 9.89967519406567 0.109627168955102 0.0998403817935953 0.107751693985812 0.102890116781842 0.101820995695920 0.107786238613068 0.109417990710914 0.103156297698912 0.112911628103209 0.106195701701222 0.100882658189953 0.102641666358776 0.100227002776204 0.111145937569299 0.108726893110530 0.100832002507637 0.110546726513932 0.106406694904556 0.102477853339784 3 3 + 22674742 22675246 22675028 22673935 22675468 + gene protein_coding_gene FALSE TRUE AT3G61220.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G24190.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.0602877658606593 0.65805664020636 0.524179797710559 1 -0.395391810001852 19.7218747626109 0.0602877658606593 0.0705015185069186
AT2G26990_at 6.90585139285501 7.05951691993558 7.09216904830087 7.02940836032002 7.50570734158935 7.37858992071488 7.10698301274221 6.92104543797109 7.09401216109285 6.58608575361854 6.85585577242343 6.78783787714564 6.62479065370549 6.81363358642805 6.83709970090524 6.90113188974269 6.87124632347801 6.75220340851762 7.15540733269556 0.151076289287006 0.155842543582256 0.156796104566212 0.164063677567409 0.155051906882974 0.16928884361865 0.146643557324784 0.161085285092190 0.155912404325744 0.152562553592806 0.153287536091163 0.158248585284274 0.153695795649723 0.154633881018129 0.162605512048493 0.146643557324784 0.160563348864560 0.154067541312771 0.151341261727374 2 2|0 -|/ 11526770 11527733 11527109.111 11526585 11529665 - gene protein_coding_gene FALSE TRUE AT2G26990.1 FUS12 (FUSCA 12); binding Represses photomorphogenesis and induces skotomorphogenesis in the dark. Identical to COP9 signalosome complex subunit 2 (Signalosome subunit 2) (FUSCA protein 12) (FUSCA12) (CSN2) [Arabidopsis Thaliana] (GB:Q8W207;GB:Q94A24;GB:Q9ZVD8); similar to ATS9 (19S PROTEOSOME SUBUNIT 9), binding [Arabidopsis thaliana] (TAIR:AT1G29150.1); similar to putative COP9 signalosome complex subunit 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD81083.1); similar to Os01g0279200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042746.1); similar to Proteasome component re (GB:ABE91558.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.0567129812981313 0.658034411261537 0.524193544885641 1 -0.395406017129299 14.0002305879764 0.0567129812981313 0.048419327600755
AT1G11750_at 9.06423803020896 8.87403808353542 9.0825021325571 8.92875711942826 9.28968024346144 8.89675270015022 9.47845053839237 9.0847541707291 8.79491800108971 8.84344951962572 8.9322618970781 8.88936951402414 8.91707444708096 8.81940783670178 9.11184874130271 9.28110563837597 8.94446595126461 8.84682808961272 8.63011569259863 0.138570288932998 0.141031343733783 0.142701878501342 0.138090418374421 0.148269161326748 0.154366431832426 0.145161946981255 0.150886509280476 0.162171296774987 0.142703948602140 0.153065855931422 0.141505894748159 0.142491862396867 0.147541022269395 0.148566458744073 0.140558111482602 0.152166856800367 0.147746133499128 0.145967687297592 1 1 + 3968383 3969494 3968679.364 3967476 3969854 + gene protein_coding_gene FALSE TRUE AT1G11750.1 CLPP6 (Clp protease proteolytic subunit 6); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G02560.1); similar to clp-like energy-dependent protease [Fritillaria agrestis] (GB:AAC04810.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.0678435182541173 0.658002636922197 0.524213195640984 1 -0.39542632421509 17.9493747950753 0.0678435182541173 0.105151527311919
AT3G46030_at 7.74495179223715 8.03141399093342 7.60662928673217 7.51620250297683 8.1520561869207 7.74532727925827 8.04133798265365 7.9508853553483 8.2870915802709 8.00563770860266 8.6431088688821 8.7643131155414 7.88658099362263 8.18802615906245 8.85398491813659 8.61395177822746 7.83918492966799 7.97586895133515 7.79867966263791 0.154473367809876 0.147104839714127 0.155942971911309 0.158656013116375 0.145173532008674 0.149084363230052 0.145305818152261 0.148570635091241 0.151661615744618 0.153486054254822 0.144097255975538 0.144235612080560 0.145691727118971 0.147305203557230 0.144694504539870 0.144649069512526 0.155512282878080 0.148681825280761 0.149526301757494 3 3 - 16924606 16924953 16924712.091 16924433 16925116 - gene protein_coding_gene FALSE TRUE AT3G46030.1 histone H2B, putative Identical to Histone H2B.7 (HTB11) [Arabidopsis Thaliana] (GB:Q9LZT0); Identical to Histone H2B.6 (HTB9) (H2BAt) (H2B) [Arabidopsis Thaliana] (GB:O23629); Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) 0.0640321737422529 0.657967289756857 0.524235056507972 1 -0.395448913648469 16.0366491045392 0.0640321737422529 0.088891440712918
AT1G74940_at 9.5926925286752 9.82737389363691 9.5480804921059 9.80185094344834 10.1825362745514 10.1581412609823 9.05514579146442 9.50660338037875 9.7280056123479 9.1895773842 9.17007029333614 8.76478994064366 9.2279355334721 9.38522678911521 8.56001781719466 9.45841205477148 9.18353657359947 8.99158720118378 9.24473048538074 0.129265540184615 0.128311284898114 0.126155942481472 0.127167411369942 0.129709962170448 0.133520717823286 0.132482064767776 0.128800345439641 0.129936935959136 0.132492106955230 0.131063649286572 0.131846710972052 0.133304977613697 0.125380192698539 0.136696117355356 0.125199775008166 0.130287997499245 0.128941258753526 0.130318418480810 1 1 + 28150028 28150696 28150308.727 28149720 28151039 + gene protein_coding_gene FALSE TRUE AT1G74940.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G19200.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE90961.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.0662287711691005 0.657966811206641 0.524235352476603 1 -0.395449219469544 18.9491204970175 0.0662287711691005 0.0984867845878662
AT4G15150_at 2.41778521266719 2.47918621052506 3.03635799467986 2.17301595098819 2.37544892070737 3.00471060987025 2.55459465247473 2.27972830956012 3.16711067633677 2.50755189264458 2.49747022856488 2.46591341457619 2.80440409780184 2.86929382760461 2.72176346499186 2.53507175139364 3.22017199458946 3.07523690672907 2.73169293737847 0.184172957722726 0.18821684241518 0.186239337467611 0.182690754918893 0.192109261451996 0.192610095285141 0.206546882617864 0.185348045013996 0.182107503582839 0.182107503582839 0.196850242267264 0.187136695768332 0.191976226387540 0.190476240989800 0.188199322987374 0.182107503582839 0.184609664971698 0.189225060037484 0.183036475789765 4 4|0 -|/ 8641694 8642253 8641903.7 8641673 8642279 - gene protein_coding_gene FALSE TRUE AT4G15150.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to Os04g0615700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053871.1); similar to H0525G02.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86307.1) 0.0930534907080693 0.657915244818443 0.524267245279428 1 -0.395482172157495 5.32799558913479 0.0930534907080693 0.191196142259170
AT1G63080_at 3.19646940408586 3.56618597102160 3.07683136144473 3.43993862696818 2.62830230038142 3.02752945338172 2.72351671088849 3.20006191919717 3.78227630664032 3.40792365658018 3.45115892221453 3.87857295784263 3.71732496388021 3.62767447668467 3.95818995606197 4.1374739449112 3.03667163779706 3.47548632643921 3.86877603965998 0.211205887411803 0.205685334567467 0.205157761095674 0.212920820892763 0.204146000570681 0.211756918909044 0.203791506610658 0.209101000604265 0.208250291162900 0.202874803382392 0.202874803382392 0.207461163944317 0.202874803382392 0.211102634733411 0.205803349910213 0.210950324564415 0.211506524907293 0.219542987003927 0.220882828430903 1 1 - 23392620 23392825 23392708.273 23391296 23394481 - gene protein_coding_gene FALSE TRUE AT1G63080.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.077207125909413 -0.657773483177534 0.524354927937922 1 -0.395572750485893 6.78067670968236 -0.077207125909413 0.140058313153894
AT2G28240_at 5.0616380729555 4.86927735432075 5.22598955124575 4.72243107491359 4.41820265808698 4.89242845695034 4.30906028721408 4.92313092665681 4.76383649220405 4.72503857001922 4.64177402914438 4.69425371185978 4.80053837789722 4.31933969449038 3.91968327927846 4.77210418716405 4.67199664741791 4.25859878122636 4.61747541473501 0.221776350971181 0.216482536106639 0.221912179436786 0.218242240717460 0.218549851448581 0.231426324445046 0.217623189463328 0.218037810238478 0.226663036697036 0.211998258530978 0.212360837646175 0.211198948091673 0.212711796486311 0.212493838596221 0.215570125634882 0.211198948091673 0.21978242922719 0.217115213732893 0.218128753924059 2 2 + 12048474 12049013 12048744.091 12046289 12049220 + gene protein_coding_gene FALSE TRUE AT2G28240.1 hydroxyproline-rich glycoprotein family protein similar to MOM (MAINTENANCE OF METHYLATION) [Arabidopsis thaliana] (TAIR:AT1G08060.2); similar to Y51B11A.1 [Caenorhabditis elegans] (GB:NP_505150.1); contains domain PRICHEXTENSN (PR01217); contains domain ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED (PTHR10799); contains domain TRANSCRIPTIONAL REGULATOR ATRX-RELATED, POSSIBLE HELICASE (PTHR10799:SF10) -0.084172231040282 -0.657430038530572 0.524567391521376 1 -0.395792119508479 9.40872125489926 -0.084172231040282 0.163492851545338
AT4G22610_at 1.21448600233469 1.16875369713511 1.09568140444059 1.15751136073838 1.54578561603485 1.01068642038040 1.74501346340116 1.21869176639842 1.62967741833833 1.82057581045637 1.61854665609328 1.35472025645169 1.69707105678599 1.47349614536998 1.50275389846859 1.61082410362246 1.17919500574763 2.01158379408853 1.26136298557076 0.196642654840876 0.195782621294579 0.203295951805251 0.197849585232944 0.199753404729393 0.198549164236303 0.198454916820299 0.195782621294579 0.212079810291685 0.203602569120039 0.199449638197909 0.195782621294579 0.195782621294579 0.195782621294579 0.204646280434951 0.195782621294579 0.210762099763515 0.199476421493895 0.199091650670442 4 4 - 11902260 11902511 11902401.273 11902116 11902653 - gene protein_coding_gene FALSE TRUE AT4G22610.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G22520.1); similar to Os04g0554600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053512.1); similar to P-rich protein NtEIG-C29 [Nicotiana tabacum] (GB:BAB16431.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.0744174527310454 -0.656913489641456 0.52488703666209 1 -0.396121857690491 2.83285751770812 -0.0744174527310454 0.130568575825460
AT1G12950_at 1.30520622824867 1.04917699684048 1.34967491113795 1.60979903320173 0.850642472425418 1.17896915385971 1.42965835076232 1.35051706284929 1.36317626030310 1.65036786275485 1.16231646141087 1.20612575963568 1.42005846855916 1.24399764516268 1.44430870369628 1.39486650798184 1.77410783196987 1.48453982604982 1.43100702864336 0.184654643844301 0.175439367278999 0.179922466714316 0.175439367278999 0.175439367278999 0.175439367278999 0.181273825719651 0.175439367278999 0.193767708557015 0.186840824877411 0.187707782008198 0.183193578794835 0.179304885941889 0.183329494059649 0.193171775280258 0.180218952329222 0.186061114107807 0.178635545261135 0.178622495386103 1 0|1 /|+ 4421527 4422053 4421797.333 4419768 4422636 + gene protein_coding_gene FALSE TRUE AT1G12950.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT3G26590.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G38030.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G23300.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87151.1); similar to Os08g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062445.1); similar to putative anthocyanin permease [Lycopersicon esculentum] (GB:AAQ55183.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.0632975835139089 -0.656775058329789 0.524972718574195 1 -0.396210184679757 2.70185912672838 -0.0632975835139089 0.0860548624849524
AT3G24440_at 3.47812767342644 3.84122337552963 3.48522504754585 3.3180639071202 3.24942043018483 3.89348698048507 4.06346036580613 4.18129323632427 3.48180045263387 3.32364260892118 3.65926985607109 3.69234490734344 3.35747690080606 3.73916284957469 3.79457290123865 4.01927976269934 3.27314843644331 3.38632074575623 3.27625462485639 0.208835418833981 0.202686515660109 0.198096170380769 0.199309137782931 0.198076852979025 0.204416196051161 0.197810451251955 0.211875991287937 0.217764028429358 0.192178369249009 0.195164488242549 0.195997146550316 0.206352538496944 0.199917614851054 0.192178369249009 0.199958649595760 0.203012419606278 0.200985068085927 0.199832221646691 3 3 - 8876249 8876762 8876455.727 8876034 8878178 - gene protein_coding_gene FALSE TRUE AT3G24440.1 VRN5 (VIN3-LIKE 1) Encodes Vernalization Insensitive 3-like 1 (VIL1). VIL1 is involved in the photoperiod and vernalization of Arabidopsis by regulating expression of the related floral repressors Flowering Locus C (FLC) and Flowering Locus M (FLM). VIL1, along with VIN3 (Vernalization Insensitive 3) is necessary for the chromatin modification to FLC and FLM. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30200.3); similar to Fibronectin type III domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98812.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Fibronectin, type III; (InterPro:IPR003961) -0.0749229609582539 -0.65598779021617 0.525460152886197 1 -0.39671218119256 7.17666909728384 -0.0749229609582539 0.132755334628381
AT3G05480_at 2.45899131022328 2.55523496488016 2.60695259958238 2.58749454295372 2.0063185145516 2.62627875527419 1.74236957726647 2.81572301948006 2.14563808087284 2.44738380365256 2.74005288100169 2.18290335123973 2.59323764590474 2.46849966114558 2.87131580463715 2.35718134294527 2.05421032956721 2.36051837050595 2.35419330623828 0.206041633086494 0.204942862799675 0.207982801413667 0.201980491427700 0.213105866000501 0.200101560695923 0.215526406583007 0.205054168598358 0.205969707971407 0.205796446045381 0.207089003195450 0.201926659986516 0.209263579088331 0.203427499411841 0.201099353221457 0.20219703745591 0.211952584817757 0.199907410773342 0.212856751932037 3 3|0 +|/ 1587301 1588215 1587652 1585308 1588338 + gene protein_coding_gene FALSE TRUE AT3G05480.1|AT3G05480.2 cell cycle checkpoint control protein family similar to Os03g0345100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050087.1); similar to Rad9 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95895.1); contains InterPro domain Rad9; (InterPro:IPR007268) 0.100716455787584 0.655787854301609 0.525583984630441 1 -0.39683958103169 4.8095345706713 0.100716455787584 0.215178688727698
AT1G32070_at 10.3782121417637 10.3626604191281 10.5276407224418 10.4949684975495 10.6744633890595 10.3181569041793 10.8126946828237 10.6458859841636 10.5784212348174 10.6358974875754 10.5545531943755 10.4419464569163 10.4492866493828 10.6079839527576 10.3847993444050 10.6643533915924 10.5067430548354 10.5153348247574 10.5524299143226 0.0869187096368169 0.0840266753439697 0.0873375762835512 0.085270746893973 0.0851996387754609 0.0927492879101897 0.0875952872211579 0.0867863888397501 0.0896345149929227 0.085588824888892 0.0871857509348363 0.0840266753439697 0.0840266753439697 0.0844345736351809 0.0854042707990189 0.0840727966163259 0.103546544577809 0.0923744821760527 0.0883867161678836 1 1|0 -|/ 11534865 11535794 11535486.4 11534662 11536318 - gene protein_coding_gene FALSE TRUE AT1G32070.1|AT1G32070.2|AT1G32070.3 ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase|ATNSI (NUCLEAR SHUTTLE INTERACTING) Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature. similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT1G26220.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56866.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.059673516136439 -0.655614561987454 0.525691328267291 1 -0.396949974629358 21.0791060030718 -0.059673516136439 0.0683705629641933
AT3G10570_at 1.534900394903 1.61205737170435 1.31409776432540 1.18380485108984 1.29415358735341 1.87022918636673 1.00789527449448 1.54146135734396 1.70187717398002 1.61566757728097 1.85594338898756 2.18572167382638 1.89469655771504 1.61159141943718 2.42005241182159 2.44052653971489 1.3474386507629 1.87396230214603 2.05936826787781 0.213081850810668 0.207395929247144 0.219615327557206 0.233940320572286 0.209477808231717 0.206420588490402 0.219948950308706 0.212329367857041 0.216815091890469 0.207142657460639 0.207619475080778 0.209156722880347 0.209859685756352 0.208440460132182 0.222731204789689 0.209716438073428 0.209209276167370 0.213471472851610 0.211264237656923 3 3 + 3303138 3303677 3303429.273 3302107 3303844 + gene protein_coding_gene FALSE TRUE AT3G10570.1 CYP77A6 (cytochrome P450, family 77, subfamily A, polypeptide 6); oxygen binding member of CYP77A similar to CYP77A7 (cytochrome P450, family 77, subfamily A, polypeptide 7, unfertilized embryo sac 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G10560.1); similar to CYP77A4 (cytochrome P450, family 77, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G04660.1); similar to CYP77A9 (cytochrome P450, family 77, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G04630.1); similar to Cytochrome P450 77A3 (GB:O48928); similar to Cytochrome P450 77A2 (CYPLXXVIIA2) (P-450EG5) (GB:P37124); similar to Cytochrome P450 77A1 (CYPLXXVIIA1) (P-450EG6) (GB:P37123); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.076465013005455 0.655531048089879 0.525743064423723 1 -0.397003166496386 3.29284795232984 0.076465013005455 0.138388050638206
AT1G08940_at 5.73567372926917 6.01101549329253 6.15631047716097 5.91164474250344 4.84376698260023 5.28873481804704 4.19291848056446 3.91657958049137 4.67389369950626 4.41990407787856 5.01391479032943 4.99687722524954 4.56150264380473 4.78480691848213 3.51140163068474 3.08311044547881 3.21570949563957 4.07564601350484 4.71658293116694 0.248073721156551 0.249223167016522 0.254489008476344 0.253975048618124 0.252709480319602 0.248234695051169 0.245583502445145 0.251968261119933 0.254531623470808 0.247568026809905 0.247156893784735 0.246890461870673 0.24736923544862 0.245843454277640 0.253710646186746 0.266234469033902 0.254691238559705 0.259604677535895 0.245399624618554 1 1|0 +|/ 2877968 2879039 2878710.6 2877695 2879172 + gene protein_coding_gene FALSE TRUE AT1G08940.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT3G05170.1); similar to Os05g0141700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054606.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53035.1); similar to Os06g0109000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056573.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 0.0689891716931714 0.655400767507907 0.525823778088203 1 -0.397086132684161 9.63649622878147 0.0689891716931714 0.110813641733384
AT3G43800_at 9.41147350976319 9.59313837153884 9.52690555480931 9.77506856493189 9.96832986039936 9.1196976368924 9.93869950650482 9.88057063373015 8.92452512709042 8.96724108205219 9.35722564714612 8.99120993774043 9.40520879454221 9.3023288763001 8.66073416218145 9.335269652888 9.07013086329805 9.19770680134431 8.78702630596137 0.157519280268744 0.158069294634630 0.170065774828739 0.163937747768096 0.156914980932933 0.18247759064753 0.156929163234591 0.157033643028194 0.166539110187036 0.160996260664310 0.158279802590223 0.158762012872395 0.157818946569187 0.164990018387656 0.162297516227928 0.154802321478809 0.154802321478809 0.159138812430506 0.167494765008357 3 3 + 15672039 15672692 15672444.182 15671846 15672912 + gene protein_coding_gene FALSE TRUE AT3G43800.1 ATGSTU27 (Arabidopsis thaliana Glutathione S-transferase (class tau) 27); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G78380.1); similar to Probable glutathione S-transferase (Auxin-induced protein PCNT107) (GB:Q03666); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.0817879512180388 0.655392408125512 0.525828957283583 1 -0.397091455647273 18.6806892949703 0.0817879512180388 0.156530083217082
AT2G23380_at 2.78885168280277 2.59215250299881 2.64984192231031 2.73716054806282 2.48447458342727 2.43974994957282 3.05227571470930 2.79068052599929 3.17978545590079 3.09159113491844 2.83374096355088 3.23311756981563 3.03943722855870 3.17933406764242 3.46662239549625 2.77474724307558 3.25179133425357 3.27037826498662 2.7858961285352 0.212503276232377 0.219457308510905 0.21585735321819 0.210160956156147 0.210160956156147 0.220861523107395 0.210160956156147 0.214336970507170 0.22026580767784 0.220058174998992 0.218679983434923 0.210160956156147 0.210915386638648 0.211545861995850 0.211065114160792 0.213165693130288 0.210160956156147 0.215397074204531 0.214992678541228 2 0|2 /|+ 9966278 9967159 9966860 9962650 9967439 + gene protein_coding_gene FALSE TRUE AT2G23380.1 CLF (CURLY LEAF); transcription factor Similar to the product of the Polycomb-group gene Enhancer of zeste. Required for stable repression of AG and AP3. Putative role in cell fate determination. Involved in the control of leaf morphogenesis. mutants exhibit curled, involute leaves. AGAMOUS and APETALA3 are ectopically expressed in the mutant. Identical to Polycomb group protein CURLY LEAF (Protein INCURVATA 1) (Protein photoperiod insensitive flowering) (Protein SET DOMAIN GROUP 1) (CLF) [Arabidopsis Thaliana] (GB:P93831;GB:O80455); similar to EZA1 (SWINGER), transcription factor [Arabidopsis thaliana] (TAIR:AT4G02020.1); similar to PHCLF2 [Petunia x hybrida] (GB:BAC84951.1); similar to enhancer of zeste-like 1; MEZ1 [Zea mays] (GB:AAR31181.1); similar to PHCLF1 [Petunia x hybrida] (GB:BAC84950.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.0580640644066304 -0.655291263474326 0.525891625508442 1 -0.397155856091796 5.76701694867239 -0.0580640644066304 0.0591298804746122
AT1G49110_at 2.24853028250370 2.90226089835595 2.94777340656707 2.97752852741475 2.74417588960002 2.63430161966759 2.63107811515064 2.94138993873847 3.14578552045951 2.63737873445179 2.51014547531221 2.55610313599139 2.42648466403159 2.81303034385101 2.30461342571426 2.93529839606224 2.89094494303132 2.82931714345443 3.06591703749147 0.201476079809121 0.201476079809121 0.207167238683495 0.202159830529632 0.213144141382910 0.202054782618938 0.205042800988155 0.201476079809121 0.209268200506717 0.211146816589488 0.204323863436514 0.201476079809121 0.203821620043956 0.207586544123630 0.201476079809121 0.204137287625039 0.221444322370412 0.20297676291108 0.204377350547811 1 1 + 18175458 18175846 18175630.75 18175263 18176118 + gene protein_coding_gene FALSE TRUE AT1G49110.1 unknown protein -0.0731607605390168 -0.655057799522425 0.526036294121198 1 -0.397304471534877 5.55734781228243 -0.0731607605390168 0.126769465408920
AT2G44020_at 4.25058481985497 4.84100909363485 4.25480819656828 4.43971096610504 4.64940964233179 4.62518163777249 4.89782027601012 4.38718332867768 4.09721901139631 4.24291869874369 4.22591863252947 4.26692482753697 4.22116494635941 4.28147103796738 3.63643127097924 4.50154923166313 4.26663420538254 3.89747362620752 4.30006075637834 0.231591448802035 0.239329668148874 0.232778488311838 0.242529489833742 0.235200314664481 0.242478403251036 0.231591448802035 0.236041157902553 0.240214125608414 0.244708014439595 0.2340875405376 0.23168947170492 0.233493812283102 0.231591448802035 0.240515758677855 0.231591448802035 0.239426644935276 0.251429331331239 0.231591448802035 2 2 - 18224822 18225379 18225111.273 18224635 18226461 - gene protein_coding_gene FALSE TRUE AT2G44020.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to Os02g0783100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048323.1); similar to Mitochodrial transcription termination factor-related [Medicago truncatula] (GB:ABE90712.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.076537642680623 -0.654925016075941 0.52611858527462 1 -0.397388975394543 8.73101122570323 -0.076537642680623 0.138889380748475
AT3G27670_at 5.52435638534677 5.47230831687968 5.49948709342523 5.98285762747983 6.38117015895694 5.73498833644129 5.72560540389858 5.98613662554338 5.27296181040981 4.89769634177908 5.22458805933535 4.98610222243149 5.26213702555534 5.28300757728446 4.68674409633022 5.65534581078504 5.35499419989812 4.94039616874577 5.54609702927871 0.207913501448551 0.208798174327073 0.215075430271740 0.217602377889264 0.204930541125011 0.224085594739311 0.204930541125011 0.206625281219062 0.222611947911915 0.211799858538186 0.204930541125011 0.206462276591736 0.204930541125011 0.211937816725472 0.209798828238237 0.204930541125011 0.228455998902499 0.21172526647907 0.208046499124054 3 3|0 +|/ 10253688 10254328 10254022.7 10246371 10254530 + gene protein_coding_gene FALSE TRUE AT3G27670.1 RST1 (RESURRECTION1); binding A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development. similar to Os01g0169500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042134.1); similar to putative RST1 [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL55289.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0788850611909548 0.654827125055732 0.526179257025733 1 -0.397451263513909 10.9949051379306 0.0788850611909548 0.147023512752361
AT4G32980_at 4.46429264018691 4.87752197845978 4.77672054511802 4.3132886731215 5.48208402043669 4.83156647971137 6.87034030160328 6.14071402989405 3.88510495611582 7.31340969983841 6.1560415567216 6.7089479046861 6.9239061980852 6.30095060742144 6.11031658572624 6.00395582377664 7.02776506203529 6.81952580758793 5.5350602079517 0.258525881445077 0.24991972905346 0.259583790415772 0.260420729275251 0.242838364433134 0.255007799451037 0.245212333981051 0.245685427979271 0.263965252374709 0.242495188242601 0.249516054123184 0.242495188242601 0.242495188242601 0.245676807630195 0.251306986710908 0.247373099856359 0.251411406297859 0.254676982271995 0.244644339590338 4 4 - 15914900 15915873 15915518.636 15914725 15918047 - gene protein_coding_gene FALSE TRUE AT4G32980.1 ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); transcription factor Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Identical to Homeobox protein ATH1 (ATH1) [Arabidopsis Thaliana] (GB:P48731); similar to BLH1 (BLH1) [Arabidopsis thaliana] (TAIR:AT2G35940.3); similar to bell-like homeodomain protein 4 [Lycopersicon esculentum] (GB:AAP47026.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.0956327986736492 0.654805152181487 0.526192876127042 1 -0.397465243692765 11.2617083241783 0.0956327986736492 0.200404111664351
AT4G19000_at 2.12289114214839 2.40039744758616 2.18645881113588 2.20855738909159 1.88992269745197 2.30997351351061 2.17201990571344 2.03407157717719 2.52241906652779 2.57594744029129 2.96357932517969 2.35734105619568 2.55992404983954 2.25591363618629 2.14245292402587 2.05533982092305 2.52200102679559 2.28174900170738 2.36151724854638 0.180233935597022 0.193037966828481 0.189911268831940 0.185400794875198 0.186277511294962 0.181054632294505 0.192695920508723 0.192611993051858 0.190728227432683 0.182672388173273 0.181635845471604 0.181881477634962 0.195808321558302 0.185999445895120 0.180886378246074 0.186241457794125 0.180940796681671 0.189062590698238 0.190544817830912 4 4|0 +|/ 10406319 10407321 10406840.1 10405514 10407350 + gene protein_coding_gene FALSE TRUE AT4G19000.1 IWS1 C-terminus family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32130.1); similar to PREDICTED: similar to CG9915-PA isoform 2 [Apis mellifera] (GB:XP_624549.2); similar to Os01g0147200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042011.1); contains InterPro domain IWS1, C-terminal; (InterPro:IPR008654); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990) -0.0639786143536483 -0.653958587712935 0.526717745590742 1 -0.398003539803781 4.6049943222578 -0.0639786143536483 0.0904151456824776
AT1G49290_at 2.41359300732426 2.74734204583143 2.93165022675770 2.62908191564599 2.24884352976351 2.36619584827477 2.60880358059826 2.17830587353456 2.61068511467379 2.56993899850691 2.38906931306317 2.46691589984847 2.36630915212119 2.08616197314792 2.57075346788099 2.30290187182705 2.50176303961467 2.14169960311611 2.4611098691027 0.204112431874792 0.197932445776948 0.199498011368027 0.20607409122329 0.200709827842295 0.207672686325559 0.20107052627291 0.204279433969977 0.199849953933946 0.203402625108673 0.20586035425748 0.199188090815316 0.198759725153655 0.200755717398443 0.198291546906590 0.203964136621397 0.207730431275968 0.205738084599852 0.197932445776948 1 1 - 18236292 18236838 18236573.727 18236276 18237292 - gene protein_coding_gene FALSE TRUE AT1G49290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13620.1); similar to hypothetical protein MtrDRAFT_AC134822g14v1 [Medicago truncatula] (GB:ABE82759.1) -0.068558058697662 -0.653908598222821 0.526748748595013 1 -0.398035306095684 4.9656977288856 -0.068558058697662 0.109727553578099
AT4G09570_at 6.81455452262974 7.2753345943903 6.63248616028084 6.33016050745274 5.35763551245582 4.8790354987693 4.72979387824448 4.88799392136189 4.88653265595398 4.4509993640988 4.41422799732687 5.25211910168813 3.97213023690563 5.07528137453605 4.99980850972960 4.45538209739784 3.75090267941627 3.90340665575536 4.15692077495768 0.229563376007047 0.237188723506945 0.219269956260205 0.238496814622405 0.220365762396728 0.232519704466101 0.223656576082448 0.226476898733764 0.219879989577484 0.238511384136204 0.217050777306247 0.222334590967161 0.228265441040261 0.222020997841296 0.222685786048438 0.224483860508446 0.233533595007164 0.217050777306247 0.217050777306247 4 0|4 /|+ 6051530 6052133 6051852.444 6049514 6052332 + gene protein_coding_gene FALSE TRUE AT4G09570.1 CPK4 (calcium-dependent protein kinase 4); calcium- and calmodulin-dependent protein kinase/ kinase Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family. similar to ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G35670.1); similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CDPK9 (CALCIUM-DEPENDENT PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G23580.1); similar to calmodulin-like domain protein kinase isoenzyme beta [Glycine max] (GB:AAB80692.1); similar to seed calcium dependent protein kinase b [Glycine max] (GB:AAP03013.1); similar to calcium-dependent protein kinase [Vitis labrusca x Vitis vinifera] (GB:AAR28766.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0736667047463054 -0.653505422325322 0.526998833355963 1 -0.398291426454917 10.3514034560805 -0.0736667047463054 0.129248120843609
AT1G07150_at 2.89409304686672 2.57312380660534 2.49527113251226 3.07505605192686 2.19752337256554 2.29395839961729 2.32405896106431 2.54425156441686 2.77228492000789 2.34660966363499 2.53024819344355 2.46074405035998 2.36024257482470 2.28834690657775 2.79534253340782 2.87174012188948 2.67123159258769 3.07361409823136 2.14023818410484 0.212221875944963 0.207480983896592 0.214030928054117 0.207075776158717 0.212463052493911 0.21519626906411 0.214807219287855 0.208201526118066 0.217667638405189 0.217540335198653 0.213439348321634 0.212297895576386 0.211364919221735 0.214823320915921 0.21544911144234 0.207075776158717 0.216349346583602 0.212067193721840 0.209663827808852 1 1 - 2194290 2194777 2194507.636 2194278 2195795 - gene protein_coding_gene FALSE TRUE AT1G07150.1 MAPKKK13 (Mitogen-activated protein kinase kinase kinase 13); kinase member of MEKK subfamily similar to MAPKKK14 (Mitogen-activated protein kinase kinase kinase 14), kinase [Arabidopsis thaliana] (TAIR:AT2G30040.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95405.1); similar to Os03g0292700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049804.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.071649115374947 0.65305390513577 0.52727898578047 1 -0.398578083676349 5.07524188269583 0.071649115374947 0.121995106249659
AT3G22845_at 8.66219972629878 9.11493756088304 8.96398279894645 8.8764623114211 8.86098530543692 8.23821559573448 8.46578830531344 8.40332859992102 8.15040121016215 7.75383667949591 7.92105727768988 8.16922654131328 7.63191042325024 7.95464770659607 7.64148646058496 7.71050275543215 7.79211028177622 7.83991961043917 7.36320912754311 0.195944386499000 0.196322592336198 0.205954386414433 0.197227420996458 0.195299562247523 0.200076278219588 0.197845373581693 0.195267763099243 0.212190993251770 0.189100435941841 0.205324272686536 0.199874214578762 0.193497403021038 0.211468815380936 0.197353856842474 0.198259657479559 0.210560769701547 0.204217485926818 0.20064878111771 3 0|3 /|+ 8087851 8088515 8088116.625 8087314 8088754 + gene protein_coding_gene FALSE TRUE AT3G22845.1 emp24/gp25L/p24 protein-related similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT3G07680.1); similar to coated vesicle membrane protein-like [Triticum aestivum] (GB:ABB90548.1); similar to Os03g0744800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051240.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.0750699572577622 0.652912325560003 0.527366849399338 1 -0.398667931593442 16.4924491777622 0.0750699572577622 0.134535361196326
AT2G12940_at 1.18617786585903 1.20011464832093 1.54591946121301 1.59033156617966 0.989855026927006 1.24270163387397 1.15324432517572 1.15219147170300 1.64505932990841 1.53287739927417 1.61399496044107 1.13166699621715 0.714873843959188 0.975679339533576 1.62995547283782 0.879094661619912 1.21715966860073 1.30013070847323 1.2128518469427 0.270568507764801 0.250679318321324 0.250679318321324 0.265225645396100 0.263427243900250 0.288214215997854 0.268126589653872 0.266307327571657 0.266453199927622 0.250679318321324 0.261778769520762 0.287876829306847 0.270417441887050 0.257822351725449 0.261179747724154 0.250679318321324 0.28633957897378 0.304899871256373 0.251216799063215 2 2 + 5324904 5325238 5325049.6 5324557 5325483 + gene protein_coding_gene FALSE TRUE AT2G12940.1 UNE4 (unfertilized embryo sac 4); transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT2G13150.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE79946.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.0557534456488438 -0.652822496785802 0.527422601139499 1 -0.39872492861453 2.58077482415759 -0.0557534456488438 0.044491941491691
AT4G15280_at 2.45041165501345 2.20733305369833 2.65587467822054 2.28076565638961 1.85662012506757 2.57223502689212 2.23757730901548 2.20447888377091 2.47433914916075 2.48632200953559 2.38377556237800 1.8123153886806 2.20919254512761 2.16850134234078 1.95246347456532 2.24331017478866 2.26549586949780 2.28421602924239 2.20356108097221 0.212708158892166 0.201569117684682 0.207067251935111 0.208037050848447 0.203547161609439 0.202745016807499 0.207398519558045 0.207584965348537 0.205051721282123 0.210167652243057 0.206582886133283 0.213877360344714 0.206358339493238 0.207206918501348 0.201615056971396 0.201569117684682 0.201569117684682 0.211374981312739 0.204649040208099 4 4 + 8720053 8720531 8720267.182 8719182 8720618 + gene protein_coding_gene FALSE TRUE AT4G15280.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G15260.1); similar to UDP-glycosyltransferase 71E1 [Stevia rebaudiana] (GB:AAR06914.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.0783708176469779 -0.652738134386322 0.527474963332127 1 -0.398778450618159 4.58465348761708 -0.0783708176469779 0.146125597452515
AT3G54340_at 0.689911511648446 0.628942249614599 0.672264938193794 1.02774084000578 0.777664006025032 0.761645211983708 1.16779241939266 1.06631153380337 1.28823125331352 0.269222118862863 0.412559402155678 0.837327869954212 1.04596513867997 0.689834196056654 0.895309837347882 0.814615707069607 0.831207517989058 0.555874914388033 0.841053648031248 0.193581816487508 0.198952130037831 0.198256119574593 0.197648394908256 0.202464559795883 0.192859491800558 0.204517496337017 0.198480520055091 0.201129216130886 0.195811554504413 0.193860630478441 0.197065092362205 0.198546813123746 0.19842722938151 0.201946612362311 0.193174606948033 0.200779093295694 0.196719349072417 0.192859491800558 3 3|0 -|/ 20130407 20131912 20131165.111 20130151 20132148 - gene protein_coding_gene FALSE TRUE AT3G54340.1 AP3 (APETALA 3); DNA binding / transcription factor Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies petal and stamen identities. Associates with PISTILLATA. Identical to Floral homeotic protein APETALA3 (AP3) [Arabidopsis Thaliana] (GB:Q9SQ18;GB:Q9SQ19;GB:Q9SQ20;GB:Q9SQ21;GB:Q9SQ22;GB:Q9SX13); similar to AGL71, transcription factor [Arabidopsis thaliana] (TAIR:AT5G51870.1); similar to homeotic protein boi1AP3 [Brassica oleracea] (GB:AAB08877.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.0587880983383832 -0.652622577900995 0.527546692038607 1 -0.398851752756485 1.62895367034560 -0.0587880983383832 0.064897884636293
AT1G72350_at 1.08031694534130 0.887793495329246 1.02644066600450 1.37284292946528 1.09543614549977 1.26575490884973 1.33801756804585 0.896347008883667 1.70696157848755 1.49678396708939 1.29660536540870 1.04626012627894 0.896029035098668 1.39538083249436 1.23842805939404 1.28353159856217 1.32550134476551 1.50060979272265 1.36403173132587 0.159686839879220 0.158088309063853 0.156616580801455 0.157725714575398 0.156995251641756 0.168607348193901 0.153573288533485 0.158975856304706 0.157738041596880 0.160530375263715 0.161434355531131 0.157554328944802 0.157991013639216 0.161804966516476 0.168623525634426 0.155480025664947 0.162072818276019 0.170079049442042 0.165084095654596 1 1 - 27243031 27243435 27243269.818 27242935 27243609 - gene protein_coding_gene FALSE TRUE AT1G72350.1 MADS-box protein (AGL60) similar to MADS-box protein (AGL100) [Arabidopsis thaliana] (TAIR:AT1G17310.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE91589.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.0676496241194192 -0.652103258847195 0.527869116108496 1 -0.399181030521637 2.50556155591487 -0.0676496241194192 0.106838120653622
AT2G47620_at 3.70049705962083 3.70928415639265 3.50171301059405 3.96321834330736 3.96425437707371 3.733460833562 3.04476386623198 3.61518275686307 3.5422028895733 3.24283425123106 3.47523913997472 3.46051139645302 3.26110669406158 3.33746139852134 3.32581557501526 3.64874403356614 3.11127227359289 3.11319015093317 3.61240129239047 0.205150961431499 0.20655645540716 0.216456724294514 0.209295167435042 0.211192815350969 0.203381470391027 0.214854517024621 0.210690553385309 0.210850237810927 0.203504032065649 0.205456244436512 0.201147736827998 0.206583919098498 0.205631660819617 0.203181823119189 0.201147736827998 0.211252432653384 0.201147736827998 0.212267221842903 2 2 + 19540134 19541251 19540509.091 19539017 19541471 + gene protein_coding_gene FALSE TRUE AT2G47620.1 ATSWI3A (Arabidopsis thaliana switching protein 3A); DNA binding Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family. similar to ATSWI3B (Arabidopsis thaliana switching protein 3B), DNA binding [Arabidopsis thaliana] (TAIR:AT2G33610.1); similar to Os04g0480300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053100.1); similar to OSIGBa0158F13.6 [Oryza sativa (indica cultivar-group)] (GB:CAH66875.1); similar to SWIRM; Lambda integrase-like, N-terminal; Homeodomain-related [Medicago truncatula] (GB:ABE82598.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0745422265284815 0.651769247732473 0.528076550663203 1 -0.399392685220346 7.05778699737056 0.0745422265284815 0.133118047457748
AT2G42290_at 1.29316916543764 1.78385268581284 1.43512760182133 1.73351772145383 1.91179976189411 2.02169014008748 1.33840776181910 1.59813606188866 1.40945828554433 2.52607536206985 1.73266410016443 1.730198360582 2.16607775852596 1.90580093199769 1.75437321687009 2.13082040813067 2.26034684228224 2.46322463767544 2.52329013974512 0.191551853892107 0.187972789639064 0.19802748860221 0.192518158143311 0.193599411655345 0.187972789639064 0.1974414070333 0.19993945288879 0.204168695906642 0.197839057648037 0.199965836867838 0.194085021590334 0.188389214974243 0.198217283674919 0.193286819989915 0.189003280769368 0.193937006155551 0.196444375729186 0.187972789639064 2 2 - 17624145 17624632 17624396.818 17623919 17626671 - gene protein_coding_gene FALSE TRUE AT2G42290.1 leucine-rich repeat family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57830.1); similar to Os08g0506400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062188.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0685697035750481 0.651639956564423 0.52815685850532 1 -0.399474587121269 3.72490238476771 0.0685697035750481 0.110720052807675
AT3G58300_at 1.54448473291889 1.26765919865894 1.45239053077076 1.46947881702323 1.25783380811611 1.46765894466467 1.06439542140307 1.57719086773852 1.37038691451123 1.75755091748399 1.45425149357893 1.38238841801449 1.39421694494821 1.78379109410033 1.80315212144709 1.48578189014837 1.85888713032031 1.85153977719146 1.49140880740591 0.196621590582832 0.194724646282102 0.203401614414056 0.197208008186979 0.205800557129754 0.198044848590628 0.199280162292845 0.199514502512862 0.198882769475441 0.198728475730508 0.197782431571939 0.195247567622101 0.19701116028035 0.198402469765846 0.199168572920986 0.199081782826866 0.197217242075972 0.195747385590847 0.194724646282102 3 3 - 21593747 21594302 21594025.182 21593741 21594367 - gene protein_coding_gene FALSE TRUE AT3G58300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58330.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains domain TRAF-LIKE AND MATH DOMAIN-CONTAINING (PTHR10420:SF29); contains domain UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED (PTHR10420) 0.06768843277439 0.651555231932354 0.528209488171383 1 -0.399528249418196 2.97090320108795 0.06768843277439 0.107225505313235
AT1G79630_at 4.07118214476297 3.32180549864548 3.60428877239658 3.66012791369036 3.94377777826364 3.52726343905559 3.61532676778948 3.81304900677314 3.25721682727885 4.10565558837959 4.24613434670841 3.51020841157442 3.65226089444611 4.05917117495544 4.0305257523626 3.73686384922351 3.73951839947164 4.09249972740636 3.74217131497002 0.221263474732362 0.215810956182174 0.216039017347671 0.217358781390441 0.214826774860811 0.226572801221222 0.211967443168126 0.214986304240131 0.212904650821168 0.213322689574773 0.213056795720043 0.213301363567677 0.216855875979725 0.217923506862152 0.213492636891512 0.211967443168126 0.213672359481892 0.218612147780458 0.212255302730908 1 1 - 29967944 29968439 29968224 29967538 29970688 - gene protein_coding_gene FALSE TRUE AT1G79630.1|AT1G79630.2|AT1G79630.3 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT1G16220.1); similar to Os08g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062155.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE89793.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT1G16220.1); similar to Os08g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062155.1); similar to protein phosphatase 2c [Medicago sativa] (GB:AAV73837.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE89793.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0801200986672618 0.651510739714619 0.52823712729 1 -0.399556427020369 7.48714219670284 0.0801200986672618 0.152569220364544
AT4G05490_at 1.25213367271932 1.26571235331433 1.55158449393596 1.66760482769303 1.13268305506426 1.57217467825238 0.953369200193147 1.36511582736967 1.35019162746491 1.38478892805880 1.63702529166670 1.25451907354836 1.28421158575131 1.13832363375213 1.03453360879778 0.842323789042474 1.30999061361875 0.972878724324078 1.22936042639733 0.190708849640163 0.19206927817073 0.186475568047022 0.190930164095634 0.194774374713541 0.197752808981506 0.191370337644922 0.192608127958518 0.194652034586586 0.191999818492347 0.200707276227145 0.186475568047022 0.188772742868797 0.192245874199401 0.190324933939894 0.186852743304228 0.196487393343274 0.203423867843164 0.186475568047022 4 4|0 -|/ 2771047 2771892 2771346.3 2771041 2772249 - gene protein_coding_gene FALSE TRUE AT4G05490.1 F-box family protein (FBL22) similar to F-box family protein (FBL20) [Arabidopsis thaliana] (TAIR:AT4G05460.1); similar to Os02g0317300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046671.1); similar to Os02g0317500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046673.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0673538982131547 0.650855137486083 0.528644493138948 1 -0.399971424857873 2.59788365558595 0.0673538982131547 0.106162127976544
AT1G54470_at 0.924676579178341 0.741586090765901 0.876347438368654 0.922040431529643 0.92560712002146 0.794177553342431 0.854675692921392 0.736549703202979 0.592417776663179 0.97429177618746 0.566164585463908 0.441203514406254 0.770833836883581 0.697765048296345 0.842531942511323 0.580282092665737 0.959400466895365 0.710567774044937 0.383583934917236 0.165380072598259 0.166767234837071 0.16956249496425 0.171896228571303 0.164435910600338 0.164152239056579 0.163727405082474 0.163424448877683 0.169174892304306 0.167758140440178 0.166353115332261 0.166292722925397 0.164631560542183 0.168038916332223 0.163341300128995 0.166162980704773 0.168119533723374 0.166259412748797 0.164754583501262 1 1 + 20348409 20352665 20350658.35 20348368 20352869 + gene protein_coding_gene FALSE TRUE AT1G54470.1 RPP27 (RESISTANCE TO PERONOSPORA PARASITICA 27); protein binding Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to Os04g0647900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054072.1); similar to Os06g0179800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056972.1); similar to H0821G03.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86057.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0555834738441836 0.65046996008031 0.528883912690129 1 -0.400215063962600 1.52005331961729 0.0555834738441836 0.0447397205278749
AT1G05805_at 8.83169369011656 8.9628124214068 8.25297722066958 8.2115431313602 9.29429509422415 8.63526635421619 8.12456938405029 8.13728664534876 8.1344280605996 8.06582121005878 8.39794644941428 8.2943416433535 8.38419568677796 8.85941878262178 6.90069079034315 7.8684387913824 7.99896750424394 7.67157124484799 7.77432327333194 0.163472105542267 0.164079228999522 0.165837679858021 0.165400051238162 0.159346033469188 0.164381899100668 0.163790174831054 0.166395136418543 0.170021746680670 0.164035823990444 0.157188328452726 0.157188328452726 0.157188328452726 0.158681467857779 0.173850037896392 0.157188328452726 0.174010453294625 0.167563610446061 0.163387824468683 1 1|0 +|/ 1746296 1747225 1746601.444 1744772 1747692 + gene protein_coding_gene FALSE TRUE AT1G05805.1 basic helix-loop-helix (bHLH) family protein similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G43140.1); similar to B1065G12.3 [Oryza sativa (japonica cultivar-group)] (GB:BAB90521.1); similar to Os01g0900800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045106.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0699260475899759 0.650439235167355 0.52890301347539 1 -0.400234492907039 16.5755407641507 0.0699260475899759 0.11652498184123
AT2G44620_at 9.46722814849281 9.6623472454418 9.37323358733732 9.45687893276327 9.62544536914263 9.14288863041387 9.98179864600747 9.94230231759436 9.2172779564223 9.26785789220833 10.0860715231023 10.0766065184711 9.6180458198755 9.82117651628628 9.83882185929964 9.57771829894658 9.31045647302197 9.23059868261359 9.12506645925243 0.134184809863408 0.126101723212472 0.134055669092896 0.134166785620879 0.128922390492247 0.152398165664427 0.128669424511382 0.128308319076457 0.132558560068473 0.139918940846372 0.128579616535110 0.125706876303192 0.13244600444978 0.140402760578263 0.136713855391635 0.130412592237051 0.140306807610646 0.136151074901296 0.135135453191231 2 2|0 +|/ 18421412 18422115 18421707.1 18421327 18422310 + gene protein_coding_gene FALSE TRUE AT2G44620.1 mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier Encodes mitochondrial acyl carrier protein. Identical to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (MtACP-1) [Arabidopsis Thaliana] (GB:P53665); similar to acyl carrier family protein / ACP family protein [Arabidopsis thaliana] (TAIR:AT1G65290.1); similar to Os07g0222800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059204.1); similar to unknown [Solanum tuberosum] (GB:ABA46780.1); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) 0.0638643663439684 0.650357263216857 0.528953975017269 1 -0.40028632386281 19.0306842250224 0.0638643663439684 0.0914883185898824
AT3G25930_at 0.222355432227889 0.51064276808131 0.796900153560444 0.982258721709983 0.774283681944625 0.743954141468154 1.05217938772841 0.936035556137062 1.22160426827651 1.52157295945322 0.894118616923335 1.11497899679601 1.15287596891201 1.06439263413629 1.02282166329842 0.499502985832863 0.88558422032479 0.645405969923543 0.768221709014523 0.202568932527134 0.206491892498273 0.202796112217673 0.209963382927517 0.204623499229774 0.202568932527134 0.205790533422722 0.203908837168066 0.218785827132595 0.205038882593679 0.202568932527134 0.206231425220429 0.204806415092959 0.214602563832803 0.206571847989189 0.203193439699199 0.213038695020693 0.203361863363635 0.206047772012313 3 3|0 -|/ 9494293 9495041 9494783.8 9494082 9495190 - gene protein_coding_gene FALSE TRUE AT3G25930.1 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT1G68300.1); similar to Os01g0511100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043170.1); similar to Universal stress protein (Usp) [Medicago truncatula] (GB:ABE84254.1); contains InterPro domain UspA; (InterPro:IPR006016) -0.0582301458012727 -0.650304020545243 0.528987077243326 1 -0.400319986045573 1.79253945249048 -0.0582301458012727 0.0628444997382899
AT2G34990_at 1.33928849524477 1.32770149359012 1.46970072076667 1.65090341495174 1.10977404210536 1.45991466540121 1.20247500502029 1.20812036109812 1.12932238618166 0.936836852985567 0.948001335734302 0.669036558167823 1.15170265210786 1.23136508607413 0.81198203375943 1.10450068947705 0.990234510716598 1.70558978498524 1.26818079043659 0.212150965617414 0.213066008519239 0.22241547110065 0.223065194735819 0.217678866239785 0.220473037072806 0.212150965617414 0.212150965617414 0.21749368657324 0.220951469992569 0.215711094234391 0.212150965617414 0.213324193280546 0.212150965617414 0.212150965617414 0.215944175047866 0.216659363434900 0.214344862348013 0.218260930585178 2 2 - 14757382 14757900 14757658.545 14757339 14758247 - gene protein_coding_gene FALSE TRUE AT2G34990.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2F (ATL2F) [Arabidopsis Thaliana] (GB:O64762;GB:Q4PSR9); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G35000.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD32383.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0591408884555598 0.649974302171653 0.529192097768944 1 -0.400528390969826 2.43998390372849 0.0591408884555598 0.0682632105807695
AT2G44195_at 2.13203792495171 1.81218297104947 2.26825759301801 1.85543738746312 1.79574887790672 2.26971910752678 1.98754781013223 1.93814374303251 2.74141645771234 1.99884550357386 2.00812980234587 2.2020124623451 1.83976025177864 2.04673693570757 2.11247653314027 1.77727062945474 2.21843637956052 2.26680146613086 2.10430184401308 0.207578875310595 0.207596065551862 0.210706141057014 0.213027834029543 0.211173468165160 0.213566217058122 0.220196296663445 0.218389053999547 0.210229099638213 0.207133904944536 0.208042146849267 0.208795336665466 0.204887061655763 0.20511550628132 0.206491534445684 0.204078559863918 0.206408834361265 0.214328623828088 0.204078559863918 2 2|0 +|/ 18281908 18282398 18282102.875 18281882 18282615 + gene protein_coding_gene FALSE TRUE AT2G44195.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44200.1); similar to PREDICTED: similar to CG2843-PA [Rattus norve (GB:XP_340891.3); similar to Os08g0500200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062154.1); contains domain gb def: Hypothetical protein At2g44195 (PTHR16196:SF3); contains domain UNCHARACTERIZED (PTHR16196) -0.0713777908439855 -0.649731691006405 0.529342984095825 1 -0.400681676011512 4.17762158988059 -0.0713777908439855 0.122345639584344
AT1G71710_at 6.12661939012943 6.19887816547656 6.12007955231225 6.1998289356373 6.69127088402532 6.48500322182123 7.30363954199583 7.34719721580268 6.74445617923671 6.92627428791975 7.73117811467926 7.39406484339325 7.01013628729774 7.39834956691518 7.27276153855034 7.06598808354287 7.03270306818782 7.22752381029768 6.68855568423659 0.199067084332833 0.187438212708735 0.186385182379116 0.190190331130208 0.185367806219024 0.191311385889089 0.185109856211094 0.184810498452609 0.199827049627172 0.198885303121078 0.183368503177672 0.182161382319113 0.179730542738805 0.189516917004535 0.194406520524679 0.187220568893683 0.198347356363890 0.181627481413969 0.191974682201056 1 1 - 26977506 26978224 26977846.364 26977229 26980493 - gene protein_coding_gene FALSE TRUE AT1G71710.1 inositol polyphosphate 5-phosphatase, putative similar to IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I), inositol-polyphosphate 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G34120.1); similar to Os01g0716800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044072.1); similar to putative inositol-1,4,5-trisphosphate 5-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAS75232.1); similar to Os01g0183300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042225.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.0550607585374523 0.649670097913053 0.529381294456047 1 -0.400720582990672 13.5855730540196 0.0550607585374523 0.0409613166407046
AT4G03630_at 0.524511389002963 0.543061782128451 0.853860993811169 0.962959219043101 0.639626854545215 0.761800019232915 0.71930277801784 0.88352619615033 0.958189836528072 0.624136657071382 0.809180762935679 0.887021595689832 0.650045190890535 0.714754299779524 0.454303628371131 0.417280520112943 0.387706107523486 0.661283251115418 1.02644126966538 0.216409646217337 0.21886415761647 0.211687962672974 0.214411283626500 0.211485704543398 0.211485704543398 0.211485704543398 0.21787225668913 0.218357849406529 0.220964233827114 0.213676048232177 0.214268376164493 0.214949942531831 0.213590661620807 0.219905272667224 0.213347820985825 0.218950610237343 0.215460756085014 0.211485704543398 4 4|0 +|/ 1609018 1609974 1609617.3 1608748 1610035 + gene protein_coding_gene FALSE TRUE AT4G03630.1 root nodule development protein-related similar to F-box family protein (FBL21) [Arabidopsis thaliana] (TAIR:AT4G05470.1); similar to Os02g0317500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046673.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.1); similar to Os08g0195800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061185.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553) -0.0549655497680441 -0.649484497163753 0.529496746226857 1 -0.400837802318799 1.48222424097846 -0.0549655497680441 0.0402671663790522
AT4G32290_at 3.75107054377798 3.82464143379305 2.5060611861967 2.68609514406771 2.81257916541426 3.47653473269292 2.91876787592749 2.78692218709850 3.14380059659620 2.45558926393667 3.23177591015277 3.77187070619944 3.75970465872659 3.37644877761716 3.91918984361605 3.69813086751617 3.55090636358091 2.87160153835533 3.19077816977497 0.180829372516628 0.188536531501286 0.200744774970158 0.184609950488971 0.192650986951928 0.180829372516628 0.184969907169729 0.184187946941293 0.201179599183894 0.204572119629419 0.189897575336373 0.187717343038819 0.184157061049884 0.188930007899241 0.189263941597792 0.188709132747490 0.195013586493043 0.190703627032458 0.193636016747235 4 4 - 15589846 15590382 15590056.455 15589680 15591170 - gene protein_coding_gene FALSE TRUE AT4G32290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25330.1); similar to Os12g0618800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067294.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77886.1); similar to Os03g0648100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050776.1); contains InterPro domain Protein of unknown function DUF266, plant; (InterPro:IPR004949) 0.071182310030793 0.649069648769951 0.529754852935714 1 -0.40109969553607 6.32158883028266 0.071182310030793 0.121883221971761
AT2G12520_at 1.75775048175953 1.97591458191527 1.94238722575217 1.72434247136649 1.60066418122551 1.77276624658469 1.73108956085090 1.90999892990453 1.83344305526795 1.79792006019857 1.71930880379073 1.10047715159272 1.86733772374354 2.18777825136585 2.05050633534141 1.84145077837393 1.77060334831745 1.73228581568895 1.82343791699873 0.182019364334337 0.191657071934423 0.185008940146941 0.192457143147141 0.184684539767157 0.198987468143138 0.187776792613331 0.188735724937331 0.188001602440333 0.193965992436736 0.186972834450377 0.183774248009262 0.192393984619761 0.199639160789384 0.181357120060608 0.185937277777852 0.194529753457358 0.193266518006494 0.202001962914761 2 2 - 5111715 5112143 5111946.182 5111500 5112898 - gene protein_coding_gene FALSE TRUE AT2G12520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G04070.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436) -0.0590984210851351 -0.649003869491644 0.529795785618029 1 -0.401141207765581 3.60285697834417 -0.0590984210851351 0.068518889704646
AT3G04990_at 1.41310357168321 1.61363085131261 1.78278427234784 1.32705905514084 1.52350684448672 1.60685412520378 1.26854744042934 1.45717898143567 1.21610154404493 1.83021836320721 1.54006959187303 1.32963052401672 1.55109720902902 1.92765280527229 1.14642780716011 1.45314474392294 1.50410653009374 1.42776719770653 1.38977494202669 0.177763283681735 0.18118174341535 0.187947097348269 0.183858862645622 0.179978024715837 0.177488273643014 0.183609439362254 0.178284771463644 0.178687714921285 0.191265105108291 0.178962458095512 0.181461141000232 0.177488273643014 0.179742637516654 0.180867574206175 0.180182296416144 0.177488273643014 0.183644281381483 0.178926353632618 3 3 - 1384019 1384577 1384294.273 1384002 1384685 - gene protein_coding_gene FALSE TRUE AT3G04990.1 similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT5G27220.1); similar to hypothetical protein PY01156 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_728880.1) 0.0641123155604727 0.648844181828086 0.529895162614794 1 -0.401241967943241 2.98092580986862 0.0641123155604727 0.0932610980577768
AT1G66470_at 1.32169471252550 1.25042129052125 1.63109060733033 1.72881149718493 0.892353268325017 1.80654321081863 1.41789678045026 1.57811521183717 1.9920965159009 1.95407206361996 1.66300409539788 1.49869821411114 1.60762297265083 1.49741847138439 1.99970918087962 1.49038225139758 1.95414625576153 1.84288309930671 2.00007233872942 0.185808730159637 0.187812709284210 0.186734956420487 0.1911984835907 0.185808730159637 0.190824632681435 0.187959768952834 0.185808730159637 0.188465941122581 0.189067886005752 0.185842148065107 0.185808730159637 0.188244823230600 0.191918817598855 0.188515640062598 0.188783216279768 0.188654926942456 0.191177853413929 0.1998229579093 1 1 + 24799327 24800193 24799634.818 24798877 24800651 + gene protein_coding_gene FALSE TRUE AT1G66470.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G37800.1); similar to bHLH protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD07489.1); similar to Os02g0710300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047894.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.0825897956955183 -0.648675445616088 0.530000182476046 1 -0.401348412814890 3.29152250922145 -0.0825897956955183 0.161974216711666
AT4G30040_at 0.635870658493564 0.656369909542667 0.802940231741178 0.685769238628997 0.473338489245312 0.702786829357195 0.734363895142097 0.271410315650433 0.389983035039103 1.03592957564113 1.05181199947447 0.467248845317655 0.763374535100351 0.548357863934529 0.806984848177334 0.569256662956024 0.7974289109078 0.633553275177479 0.581057230154231 0.216650676690885 0.213598726465139 0.218033428086438 0.214301887671421 0.217973955580408 0.215942902132921 0.217599486717094 0.217879117745199 0.217393865409547 0.223781362245272 0.218314788048504 0.22086356413301 0.215973823017437 0.222016507528606 0.213052894252055 0.214613646022226 0.230990628137487 0.222437134139171 0.214094073883566 4 4 + 14686323 14686823 14686567 14685608 14686891 + gene protein_coding_gene FALSE TRUE AT4G30040.1 aspartyl protease family similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G30030.1); similar to Os04g0677100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054261.1); similar to H0402C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86229.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.0637335866109313 0.648421377532245 0.530158334903582 1 -0.401508640053507 1.30722722826294 0.0637335866109313 0.091755178559921
AT4G30380_at 0.877905431291295 0.805589723663455 0.994363850483649 1.39825139457798 0.759548493009402 0.730734445039247 1.06396681692059 1.09706675278207 0.945667955875083 0.917784166177826 0.820745574268941 0.982452544981232 1.06073013561219 0.63366762325984 0.712746960624961 1.02676291669713 1.35397875386696 1.25804203424952 0.751524099105001 0.176396266538418 0.176689235040677 0.182129186995896 0.182855631078810 0.188501848489523 0.187120380623026 0.180994353947764 0.185584834492896 0.178615280375394 0.183453366660151 0.195061208212611 0.182305232454142 0.184211958932650 0.189474120587128 0.181864552731683 0.184968967315216 0.185888170631615 0.194811190896837 0.176396266538418 4 4|0 +|/ 14860544 14860945 14860783.2 14860492 14861000 + gene protein_coding_gene FALSE TRUE AT4G30380.1 expansin-related Identical to Putative expansin-like B2 precursor (AtEXLB2) (AtEXPR2) (Ath-ExpGamma- 1.1) (EXLB2) [Arabidopsis Thaliana] (GB:Q9M0C2); similar to expansin family protein (EXPR3) [Arabidopsis thaliana] (TAIR:AT2G18660.1); similar to putative blight-associated protein p12 precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD22245.1); similar to Os09g0472900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063448.1); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132) 0.0595372210861711 0.648034957878758 0.530398926114972 1 -0.401752223682347 1.89232814263650 0.0595372210861711 0.0714111207679651
AT1G02090_at 5.80463930950578 5.99953069617596 5.68760723331933 5.68442083272348 6.13391488691489 5.67049559854085 6.25451104721492 6.02635750432526 4.90644410134384 5.13693575306321 5.16096298602272 5.3942781776458 5.43105974166067 5.25422272280399 5.45125730120596 5.45727189106589 4.87246907725969 5.75649774554736 4.92979120194434 0.225558943979319 0.226174868696884 0.220281843279909 0.222448539522732 0.234381775042777 0.238043185906794 0.230055226521509 0.220825599981123 0.233266718973873 0.223181881514721 0.223566700322214 0.220281843279909 0.223137504810596 0.224227478383806 0.232070426419619 0.224725998045925 0.238589228080333 0.229716480851965 0.222555793165493 1 1|0 -|/ 388570 389232 388966.143 387277 389647 - gene protein_coding_gene FALSE TRUE AT1G02090.1|AT1G02090.2|AT1G02090.3 FUS5 (FUSCA 5); MAP kinase kinase encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype. Identical to COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA protein 5) (FUSCA5) (CSN7) [Arabidopsis Thaliana] (GB:Q94JU3;GB:O81247); similar to putative COP9 complex subunit, FUS5 [Oryza sativa (japonica cultivar-group)] (GB:BAD30468.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.064522717593434 0.64776742572167 0.530565533134373 1 -0.401920787077399 11.0768393756827 0.064522717593434 0.0955418925315459
AT2G47280_at 0.830110114782134 0.95175115835867 1.10675095775085 1.15019155278880 0.94188285913481 1.3651977762558 1.15103350643309 0.932779832799413 1.27261563258509 0.904238369584273 0.909784721277143 1.25848487711434 1.47776646701449 1.16198819915918 1.02488950937347 1.30002035404222 1.01984271356118 0.684884976320101 1.28733238207488 0.191230929368027 0.190180255614007 0.192021235455194 0.190391418401707 0.190610430336334 0.203257412602122 0.187375936536019 0.189940478064999 0.208983737069288 0.194185868991035 0.189495457164442 0.186421060099630 0.189566670674081 0.201232442604152 0.189800359580785 0.191698301345834 0.192482702238656 0.196871391487175 0.192802461987311 2 2 + 19424597 19425282 19425017 19423845 19425453 + gene protein_coding_gene FALSE TRUE AT2G47280.1 pectinesterase similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G19150.1); similar to pectin methylesterase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20793.1); similar to Os07g0655600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060498.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.0622830329369604 0.64769428072739 0.530611089838747 1 -0.401966862233218 2.18343048077837 0.0622830329369604 0.0853974906282468
AT2G31110_at 5.48440867080918 5.57674080466686 5.1039317364502 5.4434378993927 6.04672153870957 5.87462252703403 4.72358873162744 4.7620288368036 5.32759995453035 4.87163005316518 4.26601521576017 4.22638798758801 4.78763925439643 4.75184810360291 4.50167433004179 5.36788373005906 5.00622470636318 4.74772239546524 5.0096460204809 0.167243333716112 0.160770332121864 0.167066054874793 0.165292671167748 0.160835744465696 0.170352015337208 0.164152696216201 0.166631948008345 0.17831761148724 0.164043006926863 0.164846637594731 0.161292188216293 0.162778599080128 0.167605704579817 0.162341137402368 0.161190962364577 0.166388557576264 0.163886379287607 0.16455292794152 2 2|0 -|/ 13265693 13269069 13267348 13265406 13269176 - gene protein_coding_gene FALSE TRUE AT2G31110.1|AT2G31110.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42570.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.0588928935519899 0.647556093725438 0.53069716267863 1 -0.402053895282233 10.2652099972542 0.0588928935519899 0.0681064910813987
ATCG00160_at 9.70121054265685 10.2187607596863 9.80149296955132 9.72796180366815 9.33496793683891 9.17478238437508 9.89445239893 10.1480170167893 10.4851881497276 10.9739451167029 11.6132632737041 11.7951297467729 11.2464393787364 11.2972193842349 11.5761772065197 11.3831538977583 10.6841282235209 10.8870728341362 10.6302043494267 0.150620873671255 0.138430920804768 0.142929037037594 0.144480901199076 0.144060276398948 0.157637691316399 0.143385463116643 0.138430920804768 0.148943522883548 0.138430920804768 0.145528572321521 0.149259365640406 0.147158049392144 0.144265138376767 0.139089576602366 0.145383968308807 0.142203156065296 0.142334641653948 0.138430920804768 C C - 15376 15588 15497.182 15013 15723 - gene protein_coding_gene FALSE TRUE ATCG00160.1 Chloroplast ribosomal protein S2 Identical to Chloroplast 30S ribosomal protein S2 (rps2) [Arabidopsis Thaliana] (GB:P56797); similar to ribosomal protein S2 [Eucalyptus globulus subsp. globulus] (GB:YP_636288.1); contains InterPro domain Ribosomal protein S2, bacterial and organelle form; (InterPro:IPR005706); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) 0.066534107656636 0.64731135171887 0.530849625539185 1 -0.402207996953849 20.7535901591247 0.066534107656636 0.104296054110307
AT2G45930_at 2.00723715437251 1.75037904503247 1.83341528788457 1.88761306238701 1.48187717054003 2.20262088520259 1.47757921387150 1.84793890325188 2.08383832302632 2.08988382028085 2.06029853265835 1.93237042280894 2.39961971608012 1.61346048353432 1.95296060098027 2.20656203144675 2.33978092512266 2.04034766171451 1.80429028387305 0.204503787635962 0.20244747074533 0.206333872778623 0.202520970614951 0.214239198601636 0.20244747074533 0.211443642158138 0.209334741717396 0.205447668460267 0.204655386045074 0.20244747074533 0.203430216380948 0.207340221256895 0.202728953394296 0.205765452506295 0.204342008102265 0.213176120222037 0.208097215139019 0.208731086629235 2 2 - 18909052 18909499 18909282 18908465 18909871 - gene protein_coding_gene FALSE TRUE AT2G45930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G16090.1) 0.0780511300523135 0.646980686248188 0.531055655049271 1 -0.402416115141366 3.84150551824448 0.0780511300523135 0.147406748609151
AT1G02940_at 0.632526116604613 1.03717884430623 0.813175006595521 0.701975110750901 0.778083562784199 0.820836413099026 0.522513917200402 0.79232960675603 0.875340379627839 1.05926344630538 0.662510675416392 1.07133695140128 0.616052026209555 0.852374643747672 0.835977892568804 0.332100308490432 1.00505112135189 1.19134659928826 0.999816248796015 0.190279966606604 0.195255166971216 0.191944539921865 0.188680184208933 0.188128469009758 0.192561837376407 0.192797718093991 0.191409606733495 0.192547949979738 0.198390944045935 0.191556233994894 0.199277052467673 0.191138758350325 0.190756442722054 0.189083277628057 0.194144131882302 0.192999170888461 0.193881007377476 0.190960815373527 1 1|0 -|/ 663127 663816 663414.444 663079 664128 - gene protein_coding_gene FALSE TRUE AT1G02940.1 ATGSTF5 (Arabidopsis thaliana Glutathione S-transferase (class phi) 5); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF4 (GLUTATHIONE S-TRANSFERASE 31), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G02950.3); similar to glutathione S-transferase 4 [Brassica juncea] (GB:AAP58394.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.0624579227549323 -0.64673786670986 0.531206979438576 1 -0.402568881481837 1.66181922337163 -0.0624579227549323 0.0866548759995237
AT2G28700_at 1.15429704129632 1.00579634283275 1.38008943715546 0.88341982307787 1.18388158145079 0.99305771794162 1.11568838868653 0.921152590299946 1.59581258952186 1.53877278399515 1.39640973716076 1.36266222163639 1.836085304799 1.50015232194038 1.09782125852247 1.66245752306595 1.46609101303833 1.65858400649752 1.14618150549942 0.198414153153353 0.20006831342981 0.200282484848358 0.199898940436146 0.198414153153353 0.203653173967915 0.198414153153353 0.208082976149788 0.199969764264947 0.198414153153353 0.199249313936357 0.198414153153353 0.200547972320167 0.2017978999425 0.209643354603407 0.198981612556713 0.207125899043097 0.204468773675383 0.210169819145614 2 2 - 12325089 12325569 12325273.273 12324243 12325823 - gene protein_coding_gene FALSE TRUE AT2G28700.1 MADS-box protein-related similar to MADS-box protein (AGL45) [Arabidopsis thaliana] (TAIR:AT3G05860.1); similar to putative MADS-box protein AGL35 [Oryza sativa (japonica cultivar-group)] (GB:BAD81343.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.065744589727337 0.646480017088884 0.531367697886722 1 -0.402731045993168 2.5419004735117 0.065744589727337 0.101350226851341
AT3G42540_at 2.77502477631429 2.32998245090265 2.41565480751574 2.27069186175952 2.36515850770926 2.76957192333842 2.50206881506684 2.30504058669164 2.95581886716127 2.9857430767503 2.89667467106343 2.83848806934741 2.69496351218190 2.57182301993354 3.21956687562919 2.74194790907512 2.56631633430502 3.110469701925 2.89058404808395 0.194899082241362 0.205062567914644 0.203342275178159 0.194217489020513 0.197303318557261 0.204091715621721 0.207853006156033 0.198561326566772 0.194217489020513 0.201858320781749 0.197386332808206 0.196056027233779 0.196274557053820 0.203828251897018 0.202508557357316 0.197580383342262 0.205289365773172 0.194980562883997 0.195729675262031 3 3|0 +|/ 14656154 14657068 14656601.286 14656093 14657428 + gene protein_coding_gene FALSE TRUE AT3G42540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43940.1) -0.0683886422395267 -0.646042947596961 0.5316401889713 1 -0.403005787920234 5.35368917900284 -0.0683886422395267 0.112345304480759
AT2G26700_at 1.33744132121482 1.39907506309196 1.58963866264371 1.60884867131801 1.43991009354195 1.33497718901865 1.62809322669698 1.31841846862515 1.95812459623956 2.221833084271 1.46609918745912 1.98804630892207 1.95663337494987 1.76779931496071 1.97271126875872 2.05620073721238 2.14317898140970 1.66727568941692 2.01158966725041 0.182137976573917 0.179288121642211 0.191429144945904 0.189167456736259 0.181649327586210 0.182537357454324 0.182714669752573 0.179219839301954 0.184067168863085 0.188488381829976 0.179219839301954 0.181436481036307 0.190551128615256 0.179219839301954 0.182073843947135 0.181870587029943 0.181465093581329 0.186375202585441 0.186529596797299 2 2|0 +|/ 11377261 11377986 11377579.444 11375674 11378177 + gene protein_coding_gene FALSE TRUE AT2G26700.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to Protein kinase [Medicago truncatula] (GB:ABE87343.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0570096869053911 -0.645965037722408 0.531688770400941 1 -0.403054744112629 3.42759644892216 -0.0570096869053911 0.0576760619147614
AT1G60320_at 1.75101627964455 1.80621723563518 2.09953170007573 1.94768763971296 1.46740811040059 1.77689594441448 1.6824126737127 1.90913740768622 1.26029631412132 1.90970574374551 1.89151009420824 1.68626548437211 1.69726513296569 1.53094649648584 1.84919151158717 1.57478438225411 1.74898825116562 1.88930817599410 1.78102959469617 0.189791653099525 0.184567991171207 0.181294764410530 0.180298332386792 0.182761344759911 0.180306990931815 0.188621736194597 0.182766936750028 0.185239569918019 0.181234136763128 0.181802847933903 0.181240193522468 0.188134375504824 0.181092403811986 0.187566007480327 0.180634877654177 0.185211779094640 0.183230184696356 0.184607767778113 1 1 + 22238773 22239241 22238986.091 22238756 22239271 + gene protein_coding_gene FALSE TRUE AT1G60320.1 Toll-Interleukin-Resistance (TIR) domain-containing protein similar to Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G57830.1); similar to MRGH63 [Cucumis melo] (GB:AAO45749.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.0594367532113610 0.645675215978443 0.531869514025997 1 -0.403236811550512 3.49697653656869 0.0594367532113610 0.0720395176742668
AT2G21290_at 9.13319579196617 9.16068745467213 9.11658800056678 9.11033565469602 9.18432406423354 9.05990355436571 8.90141720955311 9.05088640824945 9.08697067794231 9.1433904403446 8.92054841260826 8.9943661434401 8.62721880702995 9.00181101906435 9.12657448007024 9.03005541869705 8.86209670307643 8.96879996156311 9.08650444896792 0.094097455879226 0.096157661024196 0.098725063390722 0.0958308099974954 0.0963025996052168 0.0934088751403555 0.096275723920187 0.09908281430598 0.103283061422878 0.0942436110098134 0.0946933410796123 0.0943409739008286 0.0975470783727025 0.101405588111119 0.0948098801282877 0.093952129926663 0.100655846292978 0.0992698239731963 0.0966546713681712 2 2 + 9119977 9120208 9120059 9119937 9120411 + gene protein_coding_gene FALSE TRUE AT2G21290.1 Identical to 30S ribosomal protein S31, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9SJU8); similar to Os09g0528100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063735.1) -0.0539734426013159 -0.645510630804568 0.531972171302005 1 -0.403340171273511 18.1131951292605 -0.0539734426013159 0.0340070635199553
AT1G53490_at 1.95717732764314 1.35981871227073 1.87685021758281 1.66253417886759 1.53448382859237 1.39208964669395 1.17176918381982 1.31360914033731 1.58917037998071 1.80917094855055 1.73530881864466 1.40742899218121 1.61200850035708 1.60375109092578 1.50869689298763 2.27237244842385 1.94313134233246 1.41465619539554 1.74664245507169 0.240356519524785 0.230297522136347 0.230101604540404 0.232629629970006 0.220888622896199 0.226124995375574 0.221989981121923 0.232540424294634 0.230043147073797 0.220888622896199 0.231026779400371 0.220888622896199 0.222133677533739 0.227224763275568 0.225359143981463 0.22916135029297 0.220888622896199 0.237967963842513 0.220888622896199 1 1|0 +|/ 19969631 19970333 19970081.9 19966935 19970620 + gene protein_coding_gene FALSE TRUE AT1G53490.1 DNA binding similar to hypothetical protein DDBDRAFT_0190305 [Dictyostelium discoideum AX4] (GB:XP_646013.1); similar to Os02g0232100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046371.1); contains domain RING/U-box (SSF57850); contains domain no description (G3D.1.20.5.170); contains domain no description (G3D.3.30.40.10) 0.0690352837690699 0.645304138645356 0.532100983588677 1 -0.403469814329198 3.23462346932114 0.0690352837690699 0.115203382149187
AT3G18900_at 1.67258907165178 2.19020949370276 1.82958112188694 2.07231744226970 1.33870061959039 2.10583478547350 1.36151326265508 1.77780428938654 2.3935114051112 2.42197918525653 1.67785317884067 2.06557538609995 2.12677292814126 1.86218930488745 1.99081179467398 2.13054591032672 2.44435032924703 2.13080678063158 2.13086204646121 0.208889711859621 0.20953030811902 0.202177157895752 0.205105943184392 0.202585537707431 0.208393638070294 0.201340187663914 0.201340187663914 0.210283669513542 0.205860925438822 0.203521024764251 0.201340187663914 0.213984975959191 0.211690051674111 0.214409188146097 0.218948183787393 0.205571808562880 0.206290407426472 0.207017067698967 3 3 + 6520202 6520711 6520391 6517187 6520798 + gene protein_coding_gene FALSE TRUE AT3G18900.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G18910.1); similar to putative ternary complex factor MIP1 [Antirrhinum majus] (GB:AAO59425.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.0878791071904042 -0.64520922069788 0.532160200599604 1 -0.403529394349752 3.97810080110162 -0.0878791071904042 0.180562027694479
AT3G60700_at 1.19493434006955 1.86138368921678 1.38110899440888 1.66918416806778 1.63330082597029 1.80135038625110 1.77269634777665 1.70686245671923 1.57602867092587 1.57576422908233 1.58233298735178 1.73571374289814 1.7959598935 1.57442412786178 1.82289534013846 1.57612948141128 1.76539218707333 2.36800228089322 1.70624586216197 0.196219315570225 0.199638393005351 0.196219315570225 0.199718375103133 0.197757797433941 0.199802046371573 0.196219315570225 0.198655527302349 0.199116705732801 0.199599633861628 0.205754593576713 0.200839134696874 0.197961865115139 0.196219315570225 0.197625460556694 0.203362427526349 0.204021685068639 0.198188133203114 0.20299588828261 3 3|0 +|/ 22449443 22450090 22449698.6 22449377 22450180 + gene protein_coding_gene FALSE TRUE AT3G60700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70040.1); contains InterPro domain Protein of unknown function DUF1163; (InterPro:IPR009544) 0.0727634431566174 0.644958379489177 0.532316712718328 1 -0.403686808598016 3.32607890565889 0.0727634431566174 0.129469502126574
AT1G22790_at 6.30822378425896 6.45579927576572 6.03194600873229 6.00160454748131 6.4453515305767 6.1297812053435 6.41939342704606 6.3875467815051 5.73197738528666 5.60588254176874 6.47088129252741 6.25597097770774 6.24106008014635 6.03131004648541 5.80892530235293 6.15068529595198 5.90706314324511 6.32086262448047 6.04112395306302 0.227529854633809 0.234188184502263 0.241151556480822 0.234032931229788 0.233361958950543 0.239870883179407 0.231325592604429 0.233775345270729 0.240618389474663 0.228770984253918 0.230712944324709 0.233374662101822 0.229175739813741 0.240109214846022 0.230522994245961 0.227615711644608 0.237188136593345 0.242263458520172 0.233520710608868 1 1 + 8070325 8070785 8070527.545 8069476 8071551 + gene protein_coding_gene FALSE TRUE AT1G22790.1|AT1G22790.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34010.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81200.1) 0.0573901122727634 0.644731086066052 0.532458555219519 1 -0.403829396864652 12.2431255561229 0.0573901122727634 0.0607660867566153
AT4G17940_at 7.87692740077914 7.71112390619762 7.73182267307478 7.13627496787713 8.09969337691418 7.77746994553454 7.81847974540941 7.32368102076272 6.96984602998343 7.54419351705299 7.32624524331868 7.52522960831239 7.46389158771925 7.21240511690263 7.53860006564517 7.37432021713434 7.63293097239311 6.89409018293657 7.1425623351472 0.187302919924123 0.186650942056909 0.183519673164271 0.184740097498528 0.181150101232442 0.180190177177462 0.181341788735669 0.183435423760123 0.191563871284300 0.184250755539968 0.188995232053019 0.181440521785031 0.191810252211902 0.181428820588116 0.179156309585794 0.177380976825209 0.187384364595697 0.189682079500650 0.196198493858133 4 4 + 9966031 9966765 9966333.273 9965754 9966979 + gene protein_coding_gene FALSE TRUE AT4G17940.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20190.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85139.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0779295263985 0.644688882568479 0.53248489472642 1 -0.403855867342744 14.9793498387469 0.0779295263985 0.147941150274219
AT2G17080_at 0.479312353876448 0.527700440882110 0.975400092593282 0.382431021423782 0.554964658550765 1.04701438610331 0.453561133027417 0.827568374996564 0.363836746657941 1.42168678355138 0.535348877471567 0.61092028634773 -0.325530275564086 0.468902706937635 0.486000676585689 0.549237130811998 0.636521179569277 0.851427631259486 0.61643850805845 0.228660082922803 0.230160378041164 0.222094114908877 0.235734297956949 0.22573547172365 0.219131212707156 0.244958374509276 0.228073967338047 0.229306870912369 0.236376859882087 0.229213553969274 0.231371524869474 0.26220593356112 0.235540796191711 0.223439448592813 0.229673667901232 0.231358186300791 0.237895097519888 0.232238903592784 2 2 - 7440494 7440979 7440744.143 7440408 7441199 - gene protein_coding_gene FALSE TRUE AT2G17080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17070.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) -0.0780667610531805 -0.644580537214563 0.532552517293603 1 -0.403923815382884 1.29462282739838 -0.0780667610531805 0.148459124689855
AT2G03210_at 1.55498518797469 1.49892356508698 1.83170022009007 1.8819689001798 1.4158931141091 1.78864129365766 1.58377125336994 1.79861921974543 1.23646245167092 1.8056938402019 1.42977590330014 1.95221390094168 1.55113688990532 1.46910488405028 1.62433080794168 1.59922543597598 1.53161685272614 1.69650431745273 1.77948210307786 0.215828081077736 0.207872693434030 0.212097374909863 0.215331161312324 0.214821299074287 0.215584967450477 0.213647526161063 0.219036860880493 0.21517405036587 0.210764944892409 0.208770334443028 0.217803718623162 0.211732099493724 0.207872693434030 0.216039347374271 0.207872693434030 0.212813152893876 0.211276497914700 0.215219925810200 2 2 - 968338 968893 968594.273 968332 970015 - gene protein_coding_gene FALSE TRUE AT2G03210.1 FUT2 (fucosyltransferase 2); fucosyltransferase/ transferase, transferring glycosyl groups member of Glycosyltransferase Family- 37 Identical to Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2) (FUT2) [Arabidopsis Thaliana] (GB:O81053); similar to FT1 (FUCOSYLTRANSFERASE 1), fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G03220.1); similar to Galactoside 2-alpha-L-fucosyltransferase (Xyloglucan alpha-(1,2)-fucosyltransferase) (PsFT1) (GB:Q9M5Q1); contains InterPro domain Xyloglucan fucosyltransferase; (InterPro:IPR004938) 0.060000950592374 0.644526743480031 0.532586093909779 1 -0.403957547844624 3.27628855545353 0.060000950592374 0.0755856138374891
AT1G58450_at 1.30978500835547 1.26468750685971 1.42887020412536 1.43860438791177 0.978811627128424 1.49533981879411 1.14212190709772 1.52911975810139 1.40954683630545 0.926025245797744 1.65698657994594 1.51356477844180 1.55487461484084 1.50083815527927 1.32599924672938 1.45064970173073 1.52052710017175 1.36055442228272 1.78409397774577 0.184193762930701 0.182242416938761 0.18462056402353 0.184200425392523 0.183892031403396 0.181471551251096 0.189777800145731 0.185620416937887 0.183456532332662 0.183880322898707 0.186356046840801 0.184299550083206 0.18374783393247 0.182498616994215 0.18861587199518 0.181471551251096 0.184122751812302 0.184420484946361 0.189575175076381 1 1|0 +|/ 21721725 21722538 21722259.4 21721679 21722581 + gene protein_coding_gene FALSE TRUE AT1G58450.1 peptidyl-prolyl cis-trans isomerase FKBP-type family protein similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to Os04g0352400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052535.1); similar to 70 kDa peptidyl-prolyl isomerase (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (GB:Q43207); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0681276346822459 0.644448454993138 0.532634961685543 1 -0.404006635609578 2.75277819973548 0.0681276346822459 0.111978168876369
AT4G21690_at 1.19821623477518 1.59151538311505 1.63467108920381 1.34486977172747 1.05412584336368 1.4471262426495 1.35394112500249 1.64145536685657 1.31193439601767 1.43056297567778 1.24998311531955 1.26682648323050 1.79441309481724 0.794866055261609 1.11522779917858 0.831294412355639 0.948895583991367 1.65077484139499 1.06892356086506 0.216143734613855 0.215400644710233 0.212231335020085 0.221192088685737 0.220269342994764 0.215473622628597 0.214930692016339 0.220620853552383 0.216030049691547 0.221267675187539 0.213338795600398 0.224770053010984 0.218355205855867 0.214057586875218 0.223469206665063 0.212231335020085 0.213805373593317 0.217483815154208 0.227542728945877 4 0|4 /|+ 11528022 11529045 11528622.5 11527241 11529072 + gene protein_coding_gene FALSE TRUE AT4G21690.1 ATGA3OX3 (GIBBERELLIN 3-OXIDASE 3); iron ion binding / isopenicillin-N synthase Identical to Putative gibberellin 3-beta-dioxygenase 3 (EC 1.14.11.15) (Gibberellin 3 beta-hydroxylase 3) (GA 3-oxidase 3) (AtGA3ox3) (AtGA3ox4) [Arabidopsis Thaliana] (GB:Q9SVS8); similar to GA4 (GA REQUIRING 4), gibberellin 3-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G15550.1); similar to (GB:BAD91162.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0700111308471781 -0.644394230475252 0.532668810220509 1 -0.404040631775318 2.64674454077698 -0.0700111308471781 0.119367930999704
AT4G16510_at 4.35231759245423 4.45937025765625 4.17070104169317 4.46566167505384 4.63084920446267 3.80765296394753 4.54025152136054 4.60602708749267 3.81676330434178 4.28486766281877 4.64928450915553 4.3474936993019 4.11613164128493 4.24716512998972 4.40540187566737 4.0330207252085 4.07974675456318 4.06741555160153 4.44154139273548 0.213490852536264 0.207715521313740 0.211556786536168 0.213173743792818 0.208585529462043 0.216768368359572 0.207715521313740 0.20903034606516 0.220195497758358 0.212287029392175 0.209494062367326 0.213628009491004 0.217041866534497 0.212629785570008 0.21180225821639 0.21099571662552 0.21361409491014 0.214922596612579 0.219703328606765 4 4|0 +|/ 9302963 9304865 9303827.778 9302821 9305070 + gene protein_coding_gene FALSE TRUE AT4G16510.1 YbaK/prolyl-tRNA synthetase-related similar to YbaK/prolyl-tRNA synthetase associated re (GB:ABE80904.1); contains InterPro domain YbaK/prolyl-tRNA synthetase associated region; (InterPro:IPR007214) -0.0793126804518609 -0.644200126814768 0.532789985616382 1 -0.404162303843692 8.59123638758775 -0.0793126804518609 0.152880894070445
AT3G19300_at 1.17764499146165 1.20762559696731 1.23604656671930 1.05047972037965 0.742311210860366 1.02830633581598 1.24840413872903 0.960213986080524 1.09172849835817 1.26216695040024 1.29721290194783 1.41051522989453 1.24566772203322 1.53158863945252 1.55070289914074 1.53390831289244 1.82519984831915 1.52585436615433 1.35183785761444 0.211943292824233 0.201122629171444 0.205002544121917 0.212309843954914 0.205961872546071 0.204666596442208 0.202876469202027 0.201122629171444 0.219148449992848 0.210444054392485 0.208484231747470 0.209822469426513 0.201122629171444 0.203198238413669 0.208503054894004 0.217421640776429 0.21307460165464 0.202692465107302 0.202825047349957 3 3|0 -|/ 6690282 6690884 6690491.2 6690124 6693290 - gene protein_coding_gene FALSE TRUE AT3G19300.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G49730.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0689400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054345.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0603252923279629 0.644172085197671 0.532807492807111 1 -0.404179878678814 2.44404190609521 0.0603252923279629 0.0774273461128115
AT1G66200_at 11.6767347613415 11.8539330487400 11.9752778273563 11.9673655543462 11.9825646738384 11.8444108238022 12.2764704530518 12.3311229427587 11.7840673233255 12.1646732435423 12.0838336687452 11.7972865332787 12.2606985069142 12.0217365255587 11.5718554452269 12.3288149207036 12.1306409929377 11.8335925025685 12.1123671798556 0.0753226017331622 0.0734902280419573 0.07394925584962 0.0762482777572775 0.074321720712824 0.0776245509469096 0.0749646702009754 0.0747388080442082 0.0850209827898968 0.0754464516371968 0.0780335160426518 0.074209893468662 0.0767891912428332 0.0827108147175269 0.083266716177004 0.0749717333267474 0.0790547887951249 0.0795170036599844 0.0779539995737362 1 1 - 24659187 24659978 24659584.545 24658873 24661301 - gene protein_coding_gene FALSE TRUE AT1G66200.1|AT1G66200.2 ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2); glutamate-ammonia ligase encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (GLN1;2) (Glutamate--ammonia ligase GLN1;2) (GLN1-2) [Arabidopsis Thaliana] (GB:Q8LCE1;GB:Q9C8C7); similar to ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT3G17820.1); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to GLN1,4 (Glutamine synthetase 1,4), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G16570.1); similar to Gln synthetase (GB:1804333C); similar to cytosolic glutamine synthetase [Brassica napus] (GB:CAA73063.1); similar to glutamine [Brassica napus] (GB:CAA54151.1); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147)|Identical to Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (GLN1;2) (Glutamate--ammonia ligase GLN1;2) (GLN1-2) [Arabidopsis Thaliana] (GB:Q8LCE1;GB:Q9C8C7); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to glutamine [Brassica napus] (GB:CAA54151.1); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) -0.0544862217766529 -0.644121188488823 0.532839269940891 1 -0.40421177594014 24.0004483286041 -0.0544862217766529 0.0400408322635553
AT1G45180_at 3.28407439781398 3.04206590417199 3.00406797552987 2.87113109709702 3.22959010982564 2.91318347728199 3.28236674115204 2.96295056804284 3.22349267480462 2.93363862936736 3.27273622659352 3.25284710436511 3.48825841474561 3.36385678522878 3.25203543420757 3.59420704908606 3.00622697501376 3.05562735747759 2.90569505475462 0.180964888592936 0.185005799907660 0.177418053451469 0.172179637383408 0.185121224160911 0.184172241692952 0.180957439090968 0.176519623333298 0.191817804998748 0.175944137550085 0.173921606292438 0.175007991260758 0.176855766729785 0.191287900980748 0.178621456749684 0.176074566210820 0.182711758108922 0.181376205149260 0.177152240163892 1 1|0 +|/ 17103128 17104010 17103409.444 17100931 17104336 + gene protein_coding_gene FALSE TRUE AT1G45180.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G42940.1); similar to Zinc finger, C3HC4 type (RING finger), putative [Medicago truncatula] (GB:ABE89604.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.063205530417985 0.644055841812912 0.532880070453876 1 -0.404252725675821 6.2270120528554 0.063205530417985 0.0913066604073633
AT1G17360_at 8.9946364294071 9.23853757948255 9.5292393803741 9.52717363831611 9.66049061905366 9.57120294866242 9.64284178669507 9.65480043282374 9.66719189740595 9.43462535421135 9.23128744035256 9.02799899333485 8.99065582395114 9.370679636842 8.9892751504345 9.2279876723496 8.94907409564656 9.43038081367173 9.25304497153369 0.088691271230591 0.0867253714440254 0.0902751856736976 0.089411199791041 0.0856275636367446 0.0883570711342078 0.0902752500274303 0.0877575972516644 0.0841361167758689 0.0841361167758689 0.0882441800237705 0.0842516991537566 0.0875672277316289 0.0886382817070513 0.0921928380104916 0.0873207471076627 0.0937429738111702 0.0874572129556958 0.0900926043411879 1 1 + 5950644 5951132 5950886.182 5947434 5951210 + gene protein_coding_gene FALSE TRUE AT1G17360.1 COP1-interacting protein-related similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT1G72410.1); similar to hypothetical protein MtrDRAFT_AC152057g10v1 [Medicago truncatula] (GB:ABE86138.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.0550653491140023 -0.644032893147371 0.532894399343851 1 -0.404267105633914 18.7792594490384 -0.0550653491140023 0.0449966537932451
AT3G55720_at 1.24628305308135 1.10610131964569 0.828121797663393 0.805067857714814 1.36546539593009 0.951091592884394 0.97625311533794 1.09773949744249 1.12034190177245 1.61616401401324 1.19149339001234 1.32564014786856 0.682332447111062 1.03081608168185 1.16395868081873 1.25103473349300 1.34466964117800 1.29102452670042 0.749698737385866 0.198018256103586 0.199612901127784 0.212676213842943 0.209816281481571 0.201433109848570 0.209377384791284 0.202740373887927 0.203712784074182 0.199922122177721 0.201863090180121 0.208580407209122 0.199081729874845 0.215603857668654 0.211067898186568 0.198756243051783 0.205300373438851 0.210034160999653 0.227358992078306 0.203365529352644 3 3 + 20691723 20692266 20691996.273 20690799 20692426 + gene protein_coding_gene FALSE TRUE AT3G55720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05840.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06886.1); similar to Os03g0267500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049665.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) -0.0605522984722747 -0.643987667286633 0.53292263851728 1 -0.404295443415793 2.20811016562844 -0.0605522984722747 0.0786679534660037
AT3G17800_at 10.6850155964468 10.6516976421808 11.2858730206832 11.1387272565876 11.0283055002039 10.9080979081390 11.6516006125891 11.4441262568651 10.8889784992457 11.1836165540926 11.0659809915625 10.7916676176346 11.1837609357862 11.1991088060162 10.7610158681938 11.5932266919475 11.4505467722682 11.2034074207986 11.0087857540303 0.064379715280161 0.0617788948339084 0.0651673275184394 0.0654165804021548 0.0630264411539881 0.0668781720641515 0.0668756146404594 0.0661308817147833 0.0760048467812666 0.0637408847434838 0.0635235775817116 0.0628806235120385 0.0655712357939698 0.0641784701074826 0.0653680807691269 0.0616364671037949 0.0701558555572708 0.0653330608547105 0.065616115465699 3 3 - 6091294 6091827 6091560.909 6091116 6093157 - gene protein_coding_gene FALSE TRUE AT3G17800.1|AT3G17800.2 mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48450.1); similar to unknown [Brassica napus] (GB:AAK30572.1); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) 0.0555516733096597 0.643619135453763 0.533152783226908 1 -0.404526291086108 22.1907886361197 0.0555516733096597 0.0490259419946621
AT3G15240_at 1.25476258940411 0.792186857586528 1.06577273470629 1.07538540444956 0.853064120302958 0.958620852347607 1.05781618216518 0.861397093357637 0.891129838769624 0.968291905810052 1.23621201286053 0.796322678065695 1.02362254605145 1.18577448250985 1.20413227345214 0.679526768523054 1.16536838131690 0.983112799604477 0.85772422410295 0.147100608382603 0.145823634807768 0.147288383993436 0.146117043952427 0.150188977614634 0.145869703623958 0.147339017382179 0.144734677708773 0.147460658372068 0.146254747673250 0.144561820153335 0.146759028584654 0.146818761784674 0.149513656598700 0.152023330671475 0.148155033104733 0.152102606524654 0.148887050601680 0.147516575588148 3 3|0 +|/ 5133790 5135758 5134791.368 5133613 5135909 + gene protein_coding_gene FALSE TRUE AT3G15240.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53900.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93307.2); contains domain gb def: At3g15240 (PTHR13902:SF3); contains domain SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED (PTHR13902) 0.0626068836135213 0.643342662440187 0.533325475760001 1 -0.404699393366012 1.95986288713609 0.0626068836135213 0.0888819591444724
AT4G34940_at 0.720170983965511 0.426523092164910 0.847688961442307 0.669743262189398 0.500376387044225 0.939114329015779 0.801364738405624 0.65187175591706 0.891182902158822 0.87863220078464 0.836331211276201 0.703149755817592 0.74003856749351 0.76169288046968 0.972850270859852 0.495024957829097 1.09109645443374 1.07647167639171 0.611296740728631 0.177069664225109 0.187383843093064 0.182927583532308 0.187317936958130 0.176471865340650 0.187245083692797 0.180934875960228 0.178887235047598 0.186979574864336 0.182591765754345 0.181761792953793 0.179062387011282 0.176471865340650 0.178210844281153 0.177732567571675 0.178724243510854 0.190168049104021 0.181468571078543 0.180535517835895 4 4 + 16641212 16641581 16641413.182 16639603 16641955 + gene protein_coding_gene FALSE TRUE AT4G34940.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G36030.1); similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66200.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE92291.1); similar to Armadillo [Medicago truncatula] (GB:ABE77933.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34223.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0650630581201883 0.643300367991066 0.533351896868438 1 -0.404725868264798 1.50874964862416 0.0650630581201883 0.099823127858226
AT2G42100_at 3.28665242133170 2.93774761028497 3.07622509474822 3.29988094973023 2.64675485996806 2.92549189624084 2.77198544081838 2.76480539724678 2.90293796786436 3.19215637595656 3.29577370692401 3.03272116100373 3.13524210479344 3.18012779271099 2.81419622449971 2.95182213881229 2.69035239899173 3.3041218300132 2.82455497667578 0.180796699561410 0.179521326224549 0.181681698701156 0.177380244229250 0.177757719266016 0.173226299622965 0.178617000205257 0.176110347559763 0.178047281053820 0.186353561894955 0.181519743028667 0.173226299622965 0.183527937352335 0.179437987740880 0.179167572364080 0.173604761605798 0.177344100225022 0.182249947876559 0.180333880213041 2 2|0 +|/ 17568328 17568988 17568634.2 17567289 17569023 + gene protein_coding_gene FALSE TRUE AT2G42100.1 actin, putative Identical to Putative actin-5 (ACT5) [Arabidopsis Thaliana] (GB:Q8RYC2;GB:P93737); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin [Striga asiatica] (GB:AAC49652.1); similar to actin 2 [Torenia fournieri] (GB:ABG49392.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.0620593561522259 0.643079775363828 0.533489712119213 1 -0.404863925818573 5.97557351373825 0.0620593561522259 0.0864411765025225
AT4G32240_at 8.29925412213503 7.91199695892502 8.50530209341986 8.27580690410676 8.6837508208866 8.2706485411879 8.6698109331432 8.29646750764295 8.48835291270095 8.41136616691514 8.7613195212584 8.31480247319177 7.83071419286625 8.58345624109051 8.2751634389383 8.80418025115457 8.55251375751238 8.62661683994985 8.49827513239611 0.172677696498473 0.176330976698929 0.176344809818379 0.178098422569394 0.171449669208052 0.179445150364693 0.169203580387613 0.171904633519286 0.18980677998157 0.166815001556778 0.172672769185106 0.166815001556778 0.173562454267234 0.178625935092387 0.174034801097311 0.169698125633708 0.175534912426074 0.173138231141430 0.172178953793329 4 4|0 +|/ 15568582 15568996 15568775.3 15568306 15569211 + gene protein_coding_gene FALSE TRUE AT4G32240.1 unknown protein 0.0710462391316238 0.642953793226126 0.533568428690967 1 -0.404942751973818 16.8314266902639 0.0710462391316238 0.123909430456934
AT4G16630_at 2.99861339348904 2.9941045543471 3.094590292196 2.75639432805018 2.14943578839949 3.30781400541518 2.48678805434957 2.0743317016842 2.19720061662305 2.34879129618482 2.56210620287047 2.57274233958857 1.96210321600867 2.63791443887193 2.62637177171666 2.01066452849189 2.13484223168165 2.20526769614857 2.43334434919840 0.239067746126033 0.240944441698076 0.239190528454154 0.241871349463593 0.241579630262303 0.249501827522219 0.238130412414891 0.265365391510416 0.235669464745494 0.242555509240703 0.235669464745494 0.242679032506075 0.236998952534733 0.243793727120452 0.243939459668655 0.243136584226515 0.249759909404749 0.243634153532318 0.237189241091302 4 4 - 9363011 9363867 9363451 9362006 9366770 - gene protein_coding_gene FALSE TRUE AT4G16630.1 DEAD/DEAH box helicase, putative (RH28) Identical to DEAD-box ATP-dependent RNA helicase 28 (EC 3.6.1.-) (RH28) [Arabidopsis Thaliana] (GB:Q9ZRZ8;GB:O23506); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT1G16280.1); similar to DEAD/DEAH box helicase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98487.1); similar to Os12g0481100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066771.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE78291.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.100577655025640 0.642949523775145 0.53357109646082 1 -0.404945423090602 5.06548250166187 0.100577655025640 0.220694379598187
AT2G22100_at 5.03480955749465 5.10470325860018 5.15055259384836 5.25089713421949 4.86181255365718 4.9429701580779 4.6156603013301 5.07323468033279 4.90667665241207 4.73684068126164 4.69166017108891 4.90532575272786 4.86883866786584 4.96463369332469 5.22873587847235 4.9170664509385 5.06272989657218 5.03159616642346 5.14818518047857 0.193499480246700 0.195677109037079 0.191426000898587 0.189003909697795 0.199194601951279 0.190767464192510 0.188965055443886 0.201997249853497 0.197209084166977 0.198446977238316 0.194390372643974 0.189636687947123 0.198657029527136 0.200115268995786 0.189998452525746 0.190017540203290 0.191792877526253 0.191595250469684 0.194493680046491 2 2 - 9399479 9399955 9399735.364 9399290 9400642 - gene protein_coding_gene FALSE TRUE AT2G22100.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G19380.1); similar to RNA-binding re (GB:ABD28657.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.061355995235298 0.642893640311805 0.5336060159978 1 -0.404980384218919 9.94902544939216 0.061355995235298 0.0831590279832021
AT3G06050_at 9.90264197082757 9.69040631299318 9.88192151030361 9.71105020995352 9.55726288074519 9.07849034624929 9.69297988406753 9.30865097497141 9.20489665553766 9.27619931864839 9.28010601863665 9.43605797541653 9.10731111281068 9.25880218384932 9.63348137688632 9.20948314877386 9.29009311816662 9.47747850488742 8.84003442433074 0.0925247869591277 0.0871232320856158 0.090981185596388 0.0952190255123121 0.091161748772081 0.094303903762408 0.0907431423390604 0.0903529724362454 0.0933648633310129 0.0888242261957147 0.0885825514422956 0.0893500773335247 0.0924640590282679 0.0921276651578932 0.0873017617579773 0.0892227148763299 0.0882662638333707 0.0896811323932367 0.100521097923462 3 3|0 -|/ 1826540 1827733 1827423.889 1826079 1827867 - gene protein_coding_gene FALSE TRUE AT3G06050.1 ATPRXIIF/PRXIIF (PEROXIREDOXIN IIF); antioxidant/ peroxidase Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions. Identical to Putative peroxiredoxin, mitochondrial precursor (EC 1.11.1.15) (Thioredoxin reductase) [Arabidopsis Thaliana] (GB:Q9M7T0;GB:Q8LEJ1;GB:Q8LPM1;GB:Q941C2); similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os01g0266600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042680.1); similar to mitochondrial peroxiredoxin [Pisum sativum] (GB:CAG30523.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.0690348324270702 0.642828343076229 0.533646819529475 1 -0.405021231129235 18.8247480843143 0.0690348324270702 0.116239778871731
AT1G67490_at 5.09957655143149 5.07968966672225 5.37904125935202 4.80233769061608 5.09239333334915 5.05097195143712 4.97323575848891 4.67330053489065 5.10898655826437 4.80095034190696 4.43269979975138 5.05170480086217 4.63394542384905 4.57513028640473 4.37349210937354 4.67091783391519 4.70057125208359 4.86146065344743 4.86062823487183 0.257299884402397 0.260350110670609 0.262609462914663 0.272655256093456 0.256736837009839 0.252239124510335 0.254983104258228 0.2582273078981 0.254714322525777 0.255919407222056 0.265962619176669 0.252239124510335 0.252239124510335 0.267264936915011 0.263740597643689 0.253434840775341 0.268371601606785 0.253615872413918 0.252239124510335 1 1|0 -|/ 25284322 25285354 25284769.444 25284114 25290274 - gene protein_coding_gene FALSE TRUE AT1G67490.1|AT1G67490.2 GCS1 (GLUCOSIDASE 1); alpha-glucosidase Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER). similar to alpha-glucosidase, putative [Arabidopsis thaliana] (TAIR:AT1G24320.1); similar to PREDICTED: similar to glucosidase 1 [Danio rerio] (GB:XP_696318.1); similar to putative alpha-glucosidase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAB86175.1); similar to Os01g0921200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045225.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside hydrolase, family 63; (InterPro:IPR004888)|similar to alpha-glucosidase, putative [Arabidopsis thaliana] (TAIR:AT1G24320.1); similar to putative alpha-glucosidase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAB86175.1); similar to Os01g0921200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045225.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside hydrolase, family 63; (InterPro:IPR004888) -0.0681480054574501 -0.642756361013976 0.533691802424434 1 -0.405066255326233 9.81182433410693 -0.0681480054574501 0.112772617390620
AT2G29740_at 1.58624926266160 1.43500913864944 1.26211278387519 1.09772918686610 1.17517253005134 1.46458036790275 1.43709549271976 1.00985152152084 1.87114837694120 1.10811084487303 1.26997956323776 1.00731308828989 0.962084890441742 1.41353057519694 1.38326320550479 1.26092860123558 1.69759097087319 1.06394000447875 0.827479407416118 0.193898261737736 0.195998068316451 0.198381812919727 0.204019294364489 0.193015770197532 0.208843747026822 0.202111282204057 0.197423306356451 0.201355358942148 0.198862091274129 0.196633037870514 0.203820642539883 0.202013515956936 0.201406702785365 0.204080526131452 0.197725412108348 0.209453166783862 0.203331530874536 0.204220514109904 2 2 + 12714663 12715102 12714830.636 12713787 12715444 + gene protein_coding_gene FALSE TRUE AT2G29740.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G07260.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G29750.1); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 (GB:2ACV); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose (GB:2ACW); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.0643683253584289 -0.64217373667257 0.53405597549997 1 -0.4054305111526 2.5715959049396 -0.0643683253584289 0.0973099546143222
AT3G52570_at 5.35784671075906 4.95486596491208 5.08391099073346 5.05746372516246 4.93072081995438 4.61825714641782 4.72660633696867 4.87288489954092 3.82372891968220 3.830334747943 4.03936697602296 3.88166100023139 4.17004235624095 4.29569251902645 3.86566036962092 4.34288083433650 4.06573468839798 4.08286967476769 4.0795970369484 0.201996245673071 0.192963127560797 0.216438264272139 0.197800077047116 0.195712070602140 0.213378902976788 0.194943992069346 0.199160747702678 0.20977047832222 0.197757973526199 0.196639679053299 0.19779576921009 0.201009045595413 0.192963127560797 0.200928904899199 0.193618479567627 0.194267518571385 0.201367514157118 0.194550649492168 3 3|0 +|/ 19512651 19513735 19513319.3 19512108 19513977 + gene protein_coding_gene FALSE TRUE AT3G52570.1 similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G10030.1); similar to Os01g0885600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045025.1); similar to Predicted alpha/beta hydrolase (ISS) [Ostreococcus tauri] (GB:CAL57242.1); similar to Os01g0862000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044879.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.0631527549972926 0.642145499574908 0.534073628921862 1 -0.405448157208317 8.95242396790034 0.0631527549972926 0.0919185682137792
AT3G63150_at 7.31691295546651 7.79799194404934 7.45143057830774 7.66510964153745 7.81092523330363 7.46513598747824 7.73879525275813 7.97629344579313 7.44908038775242 7.58804857470716 7.1746466355932 7.44512243303013 7.59161701259483 7.15481515366747 7.30179762616516 7.69246660038603 7.64891895634475 7.40356319497902 7.3284443710006 0.151848942970989 0.160214812492443 0.169702930091635 0.158197020324176 0.159757352402283 0.158832492626108 0.154262223449038 0.170380436817776 0.175526951145971 0.153990351859911 0.157826210199211 0.154520352311992 0.154045826926928 0.156927093582994 0.167945961130174 0.153807689696939 0.157287961796696 0.154381389165794 0.158823939205139 3 0|3 /|- 23340185 23340838 23340434.111 23339903 23343823 - gene protein_coding_gene FALSE TRUE AT3G63150.1 GTP-binding protein-related similar to EMB2473 (EMBRYO DEFECTIVE 2473), GTP binding / calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G27540.2); similar to Os03g0810600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051665.1); similar to Os01g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044775.1); similar to putative mitochondrial Rho 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD81741.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain EF hand associated, type-1; (InterPro:IPR013566); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Miro-like; (InterPro:IPR013684); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain EF hand associated, type-2; (InterPro:IPR013567) -0.0689603494591662 -0.64155371948884 0.534443678678761 1 -0.405817810585465 15.093729161211 -0.0689603494591662 0.116484086557688
AT1G53345_at 1.73252655938139 1.42750203465989 1.44406912048861 1.60468406544394 1.19009920649745 1.69901851408723 1.32366962690388 1.35217406313826 1.40133943451487 1.79427356089326 1.67999382227443 1.71403659126854 1.63654064947087 1.98743839140799 1.63125836044036 1.86791831255921 1.66785946078232 1.97691022028817 1.79279844525988 0.165160660924753 0.166683971670197 0.167279190918044 0.168550128101313 0.168191487050398 0.165036653116971 0.175707256561183 0.166071119589368 0.171158779268036 0.166811043679999 0.169500353300869 0.165454261978311 0.170731573022841 0.173075232537984 0.167890907561916 0.166922421711087 0.167811147038095 0.166573974178347 0.169101367291607 1 1 + 19906660 19907155 19906945.364 19906163 19907549 + gene protein_coding_gene FALSE TRUE AT1G53345.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G09580.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92892.1); similar to Os02g0684600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047763.1); contains domain DHH phosphoesterases (SSF64182) 0.066470159056968 0.641552364988013 0.534444525839868 1 -0.405818656309421 3.18824204363383 0.066470159056968 0.106488183838015
AT3G19310_at 1.01942760472542 1.08844898778813 1.14138574700202 1.1572459264863 1.24412331327965 1.39596966635372 1.05332430115620 0.966440948213389 1.60437900317756 1.09737977471024 1.57967941900856 1.30999264714431 1.02035267703401 1.16537544489664 1.89118422015806 1.09108430692206 2.06232441749084 1.06630446770627 1.78059949749018 0.202788349882538 0.198010141008905 0.201484713585648 0.198742309488468 0.199797762265832 0.205501174383806 0.199487716464754 0.198010141008905 0.201583925302768 0.205664584781968 0.202953744582384 0.202208727929655 0.206196811973772 0.202339003117828 0.206503493963282 0.199640083128009 0.203991555582045 0.204791485145821 0.201251381816603 3 3 + 6695358 6696161 6695773.727 6694202 6696220 + gene protein_coding_gene FALSE TRUE AT3G19310.1 phospholipase C similar to phospholipase C [Arabidopsis thaliana] (TAIR:AT1G49740.1); similar to Phosphatidylinositol-specific phospholipase C, X re (GB:ABE93551.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909) 0.0534692388643697 0.640993719942847 0.534793991692072 1 -0.406167323088426 2.57949912446115 0.0534692388643697 0.0326617600453919
AT2G40210_at 0.99325791298616 1.19008704679118 1.66975717426968 1.41136093047486 1.37790964552806 0.921428394232847 1.35748298657204 1.10909643642660 1.64914466065457 1.48072953053595 1.76845639850827 1.80944228528632 1.79497714946811 1.42428703486993 1.66644583456971 1.34457923767737 1.66560184514221 1.09420983622719 1.73326544597131 0.211147262684264 0.215455584060215 0.210828262260557 0.212162217415595 0.206749539765605 0.212323092659389 0.210651914114471 0.215845915980589 0.222419780866945 0.213421519252750 0.22042584919841 0.206749539765605 0.212552953059647 0.207947565039832 0.211171210691203 0.215061301658344 0.210328826977234 0.222293612880986 0.215439046413507 2 2 - 16800299 16800729 16800534.727 16800291 16801406 - gene protein_coding_gene FALSE TRUE AT2G40210.1 MADS-box family protein similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT2G26880.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE94129.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.0662931737151973 0.640852864397058 0.534882126042167 1 -0.406255190975572 2.8498208151298 0.0662931737151973 0.106056016359076
AT2G47460_at 1.47255478975543 1.13138061157109 1.57857324029739 1.89794752689799 1.46178144082467 1.84820928148653 1.61034642052626 1.61763274614370 1.77508515673024 1.62179387081121 1.94111106694385 1.47161267789499 1.67961770444127 1.47877720337566 1.19121477682714 1.59931265637953 1.80192158032223 1.86865166241006 1.81019961849251 0.190170898411276 0.194407170205006 0.189935421247718 0.194661243857310 0.193410510660712 0.192500590112976 0.18946618783873 0.194905693330102 0.199813963563243 0.189244001283396 0.192910051693436 0.189244001283396 0.192869614441647 0.202459800432228 0.206025223120368 0.196769928326208 0.191189870664364 0.204528933402097 0.193328826134868 2 2 + 19485730 19486281 19486011.273 19483407 19486548 + gene protein_coding_gene FALSE TRUE AT2G47460.1 MYB12 (myb domain protein 12); DNA binding / transcription factor/ transcriptional activator MYB12 belongs to subgroup 7 of the R2R3-MYB family. It strongly activates the promoters of chalcone synthase (CHS), flavanone 3-hydroxylase (F3H), flavonol synthase (FLS) and - to a lesser extent - chalcone flavanone isomerase (CHI), but cannot activate the promoters of flavonoid-3'hydroxylase (F3'H) and dihydroflavonol 4-reductase (DF). The activation requires a functional MYB recognition element (MRE). Results from the myb12-1f allele indicate that an activation domain might be present in the C-terminus. Overexpression or knock-out plants do not show any obvious phenotype under greenhouse conditions. Young myb12-ko seedlings contain reduced amounts of flavonoids (quercetin and kaempferol), while seedlings as well as leaves of MYB12-OX plants displayed an increased flavonoid content. They did not show any significant difference in anthocyanin content. Expression of CHS and FLS shows a clear correlation to MYB12 expression levels. CHI and F3H show increased transcript levels in the MYB12-OX lines, but no differences in the knock-out. Even in the absence of functional MYB12, flavonol biosynthesis is not completely absent, suggesting functional redundancy. similar to AtMYB11 (myb domain protein 11), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G62610.1); similar to Myb-like DNA-binding domain, putative [Medicago truncatula] (GB:ABE90996.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0659918822202768 0.640516098191059 0.535092877063649 1 -0.406465198830885 3.25966340623071 0.0659918822202768 0.104948675401080
AT4G29030_at 3.69420963080609 3.33722207748227 3.32041078646724 3.24988449743242 3.63432913047566 3.21640895629601 3.64650833830026 3.04536847259783 3.61389890175239 3.73030716500016 3.84235831065392 3.82122416984178 3.9028284593846 3.57476821759703 3.91460848747897 3.75062458175383 4.03964168469721 3.94745184568712 3.52363158741041 0.202141975707817 0.21497017856522 0.205340744674116 0.198724339235015 0.198724339235015 0.213627136345185 0.200938419390506 0.201005298720271 0.204038809406503 0.199977211501293 0.203654742566981 0.198724339235015 0.1993711896278 0.201760202565783 0.198724339235015 0.201517713622982 0.206657858126624 0.200123567546221 0.203255118625747 4 4 + 14307349 14307657 14307482 14307255 14307979 + gene protein_coding_gene FALSE TRUE AT4G29030.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G29020.1); similar to putative glycine-rich protein [Brassica napus] (GB:CAC01931.1) 0.0755034405601888 0.639835805681408 0.535518755546897 1 -0.40688911970647 7.12894312174445 0.0755034405601888 0.141486394453715
AT1G51170_at 3.03450164446497 2.59964262015062 2.61709592931627 3.20759702346581 2.68979907153196 2.40768834556636 3.11908780770505 3.70674111491817 3.43990018360088 2.97565813718859 3.27306323185464 3.82575020480815 3.73288065987417 3.68401685278598 3.73057398567320 4.44292147737748 4.01863924196713 3.52105054131905 3.26401623935179 0.226044966409447 0.216060388674408 0.224128970412145 0.220913443641749 0.220662223096682 0.222023089882657 0.233898173085179 0.23671979815100 0.217733576833136 0.221058738060792 0.222153635150505 0.223428263524078 0.216060388674408 0.219870514296582 0.221716367961963 0.228262604996488 0.216060388674408 0.221257103066753 0.221530806027435 1 1 - 18957318 18957827 18957568.727 18957126 18958560 - gene protein_coding_gene FALSE TRUE AT1G51170.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20830.1); similar to Os08g0504800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062182.1); similar to Os02g0603000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047362.1); similar to G11A protein (GB:AAA33905.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0838194833687276 0.639773253883922 0.535557924182249 1 -0.406928077694948 6.42533763355885 0.0838194833687276 0.169798003618699
AT4G33390_at 1.70613807865939 1.74019005917371 2.01479726617493 1.67992750240009 1.31628010111530 1.72819700348454 1.24306878625583 1.37131723768178 1.72321437765494 1.81111568169993 2.03898694426161 1.23872104755249 1.80765925528323 1.67822328675928 1.82399406269497 1.63515450573441 1.90215742752822 1.97750881246336 1.88174746618907 0.170363679995808 0.169883598923935 0.173749427783028 0.171292771139097 0.187775053261660 0.175281738354865 0.170763266677779 0.173921989274662 0.175061285047950 0.170778224733679 0.170962427274451 0.169883598923935 0.174001314818278 0.176733655011540 0.174748959688832 0.173429917745421 0.174444247185083 0.170312917568259 0.175307908572661 4 4 + 16077122 16077617 16077361.909 16075285 16077709 + gene protein_coding_gene FALSE TRUE AT4G33390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26570.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88908.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.0635317102272082 0.639732026159629 0.535583741028115 1 -0.406953752881952 3.3840694258512 0.0635317102272082 0.0946943507135202
AT1G21528_at 2.30115264343503 2.15518194362123 2.46037624638824 1.88633067560003 1.74229786348977 1.78345977438727 1.62332836055582 2.36046454454854 1.88916595250192 1.85557932341043 2.20700793643623 2.09433758979289 1.50391955137398 2.75735039526787 2.28028508102422 2.20120350604640 1.85914470058618 2.15444615241670 1.73417526434216 0.263416265152006 0.250454315280876 0.261940676327131 0.250454315280876 0.252017953888637 0.262843720534478 0.252958005492068 0.250454315280876 0.250454315280876 0.268016620378998 0.253128640992854 0.250454315280876 0.254444571847463 0.250454315280876 0.252505935579860 0.250454315280876 0.250454315280876 0.261830989972066 0.250454315280876 1 1 - 7542825 7542981 7542893.333 7542819 7543028 - gene protein_coding_gene FALSE TRUE AT1G21528.1 unknown protein 0.081994642146365 0.639702004563787 0.535602541035006 1 -0.406972448323499 4.01833336193802 0.081994642146365 0.163799673770299
AT4G30940_at 3.50453557649457 4.02249829148758 3.75676705643069 3.7080090108998 3.63952451850238 4.03615301721008 3.38858350921358 4.12163310056095 3.68777388501137 3.40425769156031 3.35073319783876 3.99842560860784 4.18281806429281 3.78581692304008 3.53474638647648 3.81124149969811 3.86469989955279 3.72513892663766 3.82725068384729 0.220573411393028 0.21203481919505 0.221933017211511 0.211540780355911 0.214738896026525 0.222101657773616 0.220820276175202 0.217525655898204 0.235746741170467 0.213151016875914 0.211540780355911 0.217147128707958 0.216924703422810 0.223516077606413 0.212763623669603 0.212677658404725 0.232957425114595 0.233945520550564 0.215365924635553 4 4 + 15055967 15056444 15056259.273 15054879 15056832 + gene protein_coding_gene FALSE TRUE AT4G30940.1 potassium channel tetramerisation domain-containing protein similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G24240.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE85429.1); contains InterPro domain K+ channel tetramerisation; (InterPro:IPR003131); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain BTB; (InterPro:IPR000210) 0.0838712955583222 0.639631156374595 0.535646908818573 1 -0.407016564628893 7.48294466847048 0.0838712955583222 0.170029055349576
AT2G23950_at 3.29238800410583 3.37380966626315 3.03545084270610 3.30280015346499 3.64534233218237 3.55286329248125 3.67145172662023 3.83042034965716 3.09074352756318 3.66914972893238 3.60574012202243 3.82585259283947 3.68888764001936 3.68513407741641 3.41129238789376 3.25338729538745 2.97220519932737 3.34746487561935 2.84896274092771 0.174170981235852 0.174170981235852 0.174711767484817 0.174170981235852 0.174492202313638 0.18618096700038 0.177738516761559 0.180067283471716 0.176805251428156 0.174170981235852 0.182539401567619 0.174170981235852 0.174170981235852 0.182018962661491 0.177842024769421 0.175552470608431 0.184577998867907 0.183354535369049 0.179428716799495 2 2 - 10194295 10194912 10194614.364 10194123 10197413 - gene protein_coding_gene FALSE TRUE AT2G23950.1 leucine-rich repeat family protein / protein kinase family protein similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G30520.1); similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.1); similar to Leucine-rich repeat, typical subtype [Medicago truncatula] (GB:ABE94689.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.056445121610848 0.639183575058582 0.535927249865624 1 -0.407295163921864 6.80141455741353 0.056445121610848 0.0578966881305153
AT3G26050_at 1.52269324869692 1.56634399405461 1.56848348534940 1.50723007119748 1.40218338122552 1.33593577499447 1.74174278661355 1.81964829106517 1.20083925009966 1.66933195746927 1.83916677371679 1.77429449358644 1.33976954229830 1.47853896665772 1.82791025651593 1.59856940018152 1.56459620020943 1.94986195397697 1.83204734344194 0.220871194071058 0.225924130671118 0.222743461004388 0.225464535127263 0.225557560105882 0.234432258075191 0.226924496954093 0.226125871053034 0.222860805523877 0.227803913592876 0.233102052494191 0.220871194071058 0.226298806081236 0.220871194071058 0.230207874671255 0.220871194071058 0.228582707285962 0.234690185127661 0.232701557987269 3 3|0 +|/ 9524464 9525452 9525128.1 9523019 9525789 + gene protein_coding_gene FALSE TRUE AT3G26050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01710.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE84619.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) -0.0524833185966255 -0.639113873220377 0.535970914974225 1 -0.407338534005564 3.17752994518123 -0.0524833185966255 0.0219686616649298
AT1G57650_at 1.53671623299497 1.64135901283930 2.04479328481662 2.01784437869534 1.48912087235373 1.12998612691854 1.30869585280771 1.48670114662748 1.26173748955233 1.54468010093143 0.867911178085243 0.82793456854732 1.37814061442848 0.929446576409184 0.978963024782304 1.16221907283535 1.21760190508746 1.22812328020348 1.29881647350590 0.198748550838266 0.200554328537601 0.208862054861271 0.200558460926458 0.198244732694541 0.203157498286333 0.197265512405108 0.202221297908774 0.203671958194652 0.211161899772014 0.201786181160859 0.202068143644010 0.217329691683885 0.201703846746095 0.199993074955751 0.198192688938177 0.201307115532818 0.199186792914516 0.205054603728833 1 1 + 21356728 21357597 21356990.818 21354956 21357647 + gene protein_coding_gene FALSE TRUE AT1G57650.1 disease resistance protein (NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G14080.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81430.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.0587753613685886 -0.638884991299467 0.536114313738517 1 -0.407480918912095 2.80300405461200 -0.0587753613685886 0.0718416599593681
AT1G65090_at 2.85765092206621 2.11764786228598 2.6550100474475 2.47138458632843 2.14477646300738 2.28835776212047 2.47437087701047 2.32961789864573 2.95408836680841 2.50940872266771 2.76685775713299 2.59088202836117 2.35086151519400 2.33525402505461 2.44534162254076 2.39821960877751 3.06637275302590 2.78566384251594 2.59306561675345 0.178651003189604 0.179764366042187 0.180233239563154 0.186929487252107 0.179924317712421 0.175042479329439 0.175646112195384 0.184449716380359 0.178537194602787 0.178614684895757 0.172636052045124 0.175455268861224 0.172636052045124 0.181981894085958 0.177064821783545 0.175009148731136 0.177527733758836 0.181437761621382 0.176469695615799 1 1 - 24184721 24186088 24185578.545 24184493 24186862 - gene protein_coding_gene FALSE TRUE AT1G65090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36100.1); similar to unknown [Hyacinthus orientalis] (GB:AAS21015.1) -0.074014466638658 -0.638825591834631 0.53615153221101 1 -0.407517862973576 5.05632832543996 -0.074014466638658 0.136580794022001
AT3G25440_at 2.26782430331804 2.41301752344441 2.09494169962225 2.09122171110736 2.60503128841694 2.76885922692529 2.61155788923248 1.82385649056497 2.49908443419349 2.10270474641935 2.42627459240368 2.50107981738527 2.20306088375906 2.31832171727151 2.32117077493497 2.53053681342325 2.50540624002714 2.38449519053064 2.47515633540307 0.21513043237703 0.200799729657293 0.215666109593948 0.209100072537307 0.202850464615304 0.199772013858644 0.200258529847811 0.203410676683339 0.201656542096182 0.213946352409664 0.200249076375309 0.201331122916891 0.200969895849222 0.204063339422205 0.201708006761403 0.204191768215892 0.206895920576258 0.201015209928909 0.209391153906948 3 3 + 9226192 9226694 9226404.455 9225204 9226947 + gene protein_coding_gene FALSE TRUE AT3G25440.1|AT3G25440.2 similar to group II intron splicing factor CRS1-related [Arabidopsis thaliana] (TAIR:AT4G13070.1); similar to Os04g0492900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053180.1); similar to Os06g0304500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057465.1); similar to CFM6 [Zea mays] (GB:ABD63903.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) 0.0753804224614751 0.638801521246525 0.536166614765408 1 -0.407532833002523 4.71342631277342 0.0753804224614751 0.141482956482532
AT1G60280_at 1.83423291240847 2.08484384912951 2.12845290537713 1.98898905939589 1.84352997458310 2.04860386131154 1.63318326734681 1.91506845483167 2.33385132231413 1.79597052741701 1.81116050661564 1.81415013065686 1.63583251538526 2.11084149296361 2.28657023856408 1.78557949976507 2.20476988366247 1.93737796891624 1.76213868737394 0.195747663941740 0.189424316676765 0.198572041328112 0.196162357643974 0.198491384894312 0.195136709737686 0.197460709003201 0.189424316676765 0.193986546126492 0.194863932135859 0.189591283481062 0.191113841194152 0.189424316676765 0.192729291223935 0.192915003901068 0.189424316676765 0.192771891990655 0.195011460591164 0.19830438995627 1 1 - 22230559 22231084 22230862.273 22230550 22231593 - gene protein_coding_gene FALSE TRUE AT1G60280.1 ANAC023 (Arabidopsis NAC domain containing protein 23); transcription factor similar to apical meristem formation protein-related [Arabidopsis thaliana] (TAIR:AT1G60300.1); similar to ANAC024 (Arabidopsis NAC domain containing protein 24), transcription factor [Arabidopsis thaliana] (TAIR:AT1G60350.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0599301315511305 0.638515318188279 0.536345967399762 1 -0.407710789119889 3.89074909818194 0.0599301315511305 0.0781185244755607
AT3G14720_at 6.68254075365446 6.72647749932872 7.10149870223562 6.94562461211954 6.91425756972677 6.55552407675948 7.96752047012417 7.91869208004568 7.09831851412317 7.58086864013917 7.37404740700127 7.57820180679483 7.62017897719317 7.63156654084778 7.15670468326432 7.58857662041603 7.29547097345023 7.6238448462248 6.78675824534885 0.181838828984079 0.171656345533312 0.175348206801465 0.175455897640063 0.172879568429285 0.176709604899658 0.175151354946161 0.172599236204241 0.183719677399667 0.173835677300505 0.175046659898664 0.169937210045146 0.178248489935756 0.172364981081246 0.185175205573187 0.173851882385953 0.186942951881307 0.171857235084738 0.176458621789738 3 0|3 /|+ 4948225 4948824 4948526.4 4946192 4949049 + gene protein_coding_gene FALSE TRUE AT3G14720.1 ATMPK19 (Arabidopsis thaliana MAP kinase 19); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 19 (EC 2.7.11.24) (MAP kinase 19) (AtMPK19) (MPK19) [Arabidopsis Thaliana] (GB:Q9LUC3); similar to ATMPK20 (Arabidopsis thaliana MAP kinase 20), MAP kinase [Arabidopsis thaliana] (TAIR:AT2G42880.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to ATMPK18 (Arabidopsis thaliana MAP kinase 8), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G53510.1); similar to double HA-tagged mitogen activated protein kinase 19 [synthetic construct] (GB:ABG54346.1); similar to mitogen-activated protein kinase homologue [Medicago sativa] (GB:AAD28617.1); similar to double HA-tagged mitogen activated protein kinase 18 [synthetic construct] (GB:ABG54345.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0581613059412878 -0.638486271567816 0.536364171746896 1 -0.407728845695374 14.4209615280507 -0.0581613059412878 0.0686355610575601
AT4G21200_at 1.62685446386716 1.58621488103545 1.50817572565995 1.97136729344662 1.29090837211237 1.68281351642321 1.59309946684029 1.35659524187758 1.81910001196893 2.10410295237308 1.42128388439699 1.75102413043511 1.63555941476393 1.67915073237122 1.48631973818372 1.66625330320177 1.80781014241014 1.78424133037010 1.66273218011743 0.208977734180201 0.205941345446216 0.202621377173281 0.209010658660781 0.202621377173281 0.202621377173281 0.209449248983792 0.210475996960533 0.206618640345073 0.205556564370152 0.209075335402831 0.209567477708422 0.208184568870456 0.203074188291698 0.208261862436058 0.208959880734370 0.20532751524091 0.203474613477425 0.206527916000351 4 4 + 11305945 11306585 11306218.545 11302695 11306611 + gene protein_coding_gene FALSE TRUE AT4G21200.1 ATGA2OX8 (GIBBERELLIN 2-OXIDASE 8); gibberellin 2-beta-dioxygenase Encodes a protein with gibberellin 2-oxidase activity which acts specifically on C-20 gibberellins. similar to ATGA2OX7 (GIBBERELLIN 2-OXIDASE 7), gibberellin 2-beta-dioxygenase/ gibberellin 20-oxidase [Arabidopsis thaliana] (TAIR:AT1G50960.1); similar to (GB:AAO92303.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0676989167322196 -0.638188698166027 0.536550689967273 1 -0.407913785934889 3.33497047815938 -0.0676989167322196 0.112913612227967
AT3G42770_at 2.02949579782401 2.01435074737358 1.32473866554503 1.77996729789974 2.18718854830198 2.11206876367905 2.03856727509109 1.92829204818563 1.93453706031179 2.17058172158347 1.97660984867376 2.41964384942770 2.28409256197623 2.45676918019087 2.09341243894825 2.05456445577139 2.14131706894911 2.35406663737679 1.74338924093392 0.266752890339515 0.266156513837459 0.277785051928820 0.270826473756744 0.260255645651192 0.265079192467008 0.265577498415118 0.267321925895739 0.267542559338567 0.266650501143164 0.258667181775684 0.266711758689795 0.262007506378394 0.263848594953363 0.255033726248755 0.268682582226651 0.255033726248755 0.263558726983660 0.255033726248755 3 0|3 /|+ 14879321 14881036 14880330.333 14878110 14881071 + gene protein_coding_gene FALSE TRUE AT3G42770.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G44060.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0606855913128721 0.638051075925394 0.536636963833057 1 -0.407999290509214 4.01286473270784 0.0606855913128721 0.0821355588684767
AT3G14850_at 2.48306977219829 2.31593502069509 2.75690015449526 2.48595678826727 2.58852350367641 2.53852727075178 3.13336583317868 3.39753216868705 3.1608923573772 3.37001019655668 3.32421926203312 3.24089405151092 3.20692525668067 3.65521798311919 2.82316449881205 3.41037876402136 3.31316386931808 3.17464465544038 2.90719637629982 0.191633804872626 0.19314139859618 0.201750159535963 0.201277723987086 0.198506567188439 0.201098751458497 0.208712806428444 0.205912502963991 0.199039433115182 0.201032054292881 0.192289658605139 0.198078745385853 0.195203820244466 0.208122184277571 0.192666498012731 0.191498863499148 0.202354709552618 0.193813961658759 0.218031288320411 3 3|0 +|/ 4996959 4997562 4997315.5 4995604 4997700 + gene protein_coding_gene FALSE TRUE AT3G14850.1|AT3G14850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29050.1); similar to Os01g0652100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043736.1); similar to Protein of unknown function DUF231, plant [Medicago truncatula] (GB:ABE82889.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.058727851759846 -0.637834549313511 0.536772718121443 1 -0.408133783861583 5.9197808236745 -0.058727851759846 0.0721095774118508
AT1G69020_at 3.34165765246159 3.53968082968611 2.99147150016062 3.41880887543567 3.70483095078419 2.89166932099018 2.6692617878495 2.76693207723650 3.15298846602469 3.12379445629968 2.48336117121493 2.54226466341222 2.70031776847202 3.18647222252733 2.23472382588877 2.60609433367180 2.79855483193528 2.46287909773571 2.61056429554284 0.209324148644166 0.192743518233231 0.209029611262928 0.198881648347181 0.202218396378452 0.204549535378500 0.205456314772928 0.202459887240915 0.194817226280944 0.199027031364925 0.193232633311197 0.192743518233231 0.195715003631584 0.207596355320416 0.202229442028796 0.195017777845212 0.205853589395597 0.205111654596183 0.207682856287506 1 1 - 25947647 25948268 25947974.818 25947549 25950860 - gene protein_coding_gene FALSE TRUE AT1G69020.1 prolyl oligopeptidase family protein similar to prolyl oligopeptidase family protein [Arabidopsis thaliana] (TAIR:AT5G66960.1); similar to Os09g0475700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063461.1); similar to putative oligopeptidase [Oryza sativa (japonica cultivar-group)] (GB:BAD38028.1); contains InterPro domain Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller; (InterPro:IPR004106); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S9A, prolyl oligopeptidase; (InterPro:IPR002470) -0.0816517541154542 -0.637731971526329 0.536837037542325 1 -0.40819748433364 5.96018040531537 -0.0816517541154542 0.163497896944039
AT1G66380_at 3.60531230726089 3.48928680349814 4.02077217525653 4.04206249130347 2.76962841085189 3.82135080982213 3.30346254543517 3.58682368209227 4.06232916562883 3.88975422761751 4.36150373394841 3.82051398153337 3.99487124745702 3.88033002775321 4.153702372212 3.70600562485085 4.12600371681928 4.26361139168713 4.12641025905615 0.191373964851153 0.186625005449538 0.186189503073913 0.182977640325894 0.188644336213231 0.186012770314183 0.187653818113021 0.185289874891190 0.18958576812025 0.184006256048117 0.186920317107034 0.189431005158442 0.181056176316618 0.186888607007394 0.193745737035592 0.183724016302851 0.184724641324948 0.183649543151309 0.182424847900277 1 1 + 24761129 24762123 24761723.455 24761076 24762153 + gene protein_coding_gene FALSE TRUE AT1G66380.1 MYB114 (myb domain protein 114); DNA binding / transcription factor Encodes a putative transcription factor (MYB114). similar to PAP2 (PRODUCTION OF ANTHOCYANIN PIGMENT 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G66390.1); similar to An2 protein [Petunia x hybrida] (GB:AAF66727.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0896926742510228 0.637729585948365 0.536838533425625 1 -0.408198965657333 7.61207855959014 0.0896926742510228 0.189597850406577
AT2G01620_at 9.4471763203477 9.29069484508442 9.84070475221566 9.50849535933061 10.0193197698124 9.55792375500972 9.57767870502702 9.39824078093578 8.96442669437733 9.42023995150613 9.13030435041578 8.85244530163072 9.00845941846854 9.07118454523403 8.66402409820212 9.30961321134946 9.17152944271457 9.0734628207165 9.23364047589656 0.115470896900677 0.113169295305869 0.115502316781927 0.113169295305869 0.117767662309419 0.125464446194742 0.118955357947826 0.11356913244106 0.127250045803015 0.119665799524076 0.123274858342511 0.117040521364103 0.117509731050371 0.123839369577548 0.126712493373587 0.114868510872254 0.117344619096228 0.119693299516528 0.120569045876550 2 2 + 278490 279146 278813.818 278126 279295 + gene protein_coding_gene FALSE TRUE AT2G01620.1 MEE11 (maternal effect embryo arrest 11); zinc ion binding similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G26000.1); similar to F-box protein family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01193.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) 0.0660943854540863 0.637505469707596 0.536979076820666 1 -0.408338107748516 18.7006444222295 0.0660943854540863 0.106668764402131
AT1G22030_at 2.41528495965367 2.43125996241596 2.20865375081720 2.4662738112406 2.54499391659821 2.35482369360171 2.25313221406742 2.50993664122055 2.65400502780364 2.77727560791842 3.0560074166854 3.5183941996654 3.25749256141790 3.16912292896349 3.03868071806158 2.85701816123859 2.61582881659267 2.96913415611928 3.37224686800682 0.232683769342688 0.235085498743902 0.235135963826743 0.236769500836206 0.2303285337423 0.234437946649893 0.229746265963484 0.231605115171834 0.229746265963484 0.229746265963484 0.230840239801752 0.235005028330996 0.233571536089224 0.232780550189362 0.240033390783940 0.230883209888405 0.230330316562784 0.238293560447391 0.248348495935092 1 1 - 7759331 7759792 7759646 7759153 7760545 - gene protein_coding_gene FALSE TRUE AT1G22030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77855.1); similar to Os08g0104800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060781.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08928.1); similar to Os01g0875000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044961.1); contains domain RHOMBOID-RELATED (PTHR22936); contains domain UNCHARACTERIZED (PTHR22936:SF1) 0.0584917753292215 0.637297807863633 0.537109320523022 1 -0.408466993888213 5.39540438757825 0.0584917753292215 0.0710866186589355
AT4G12270_at 1.47693483346988 1.2610045108799 1.57081403884087 1.03098840259921 0.978185330552059 0.945798092865163 0.807492125971875 1.08688822062917 1.07976920945262 1.17689937418328 1.57136838036294 0.857945239004868 1.93766768559675 1.03422843462342 1.36859874868412 1.17359205136781 1.73834606389392 1.03097685178854 1.27702512463795 0.199834448957728 0.2004060147256 0.20667113660437 0.202222858934144 0.199411118085835 0.201924239473316 0.205654239444817 0.202453354069363 0.216411500060826 0.209449194204987 0.200624756641695 0.204934162646096 0.203066190856137 0.205823448076765 0.203951799152688 0.200125609584555 0.205431653707994 0.209098711220984 0.206305468900671 4 4|0 +|/ 7298609 7299477 7298905.444 7297802 7299924 + gene protein_coding_gene FALSE TRUE AT4G12270.1 copper amine oxidase family protein similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) 0.0672795363169838 0.636911903763945 0.537351404405918 1 -0.40870640388747 2.40325736181264 0.0672795363169838 0.111770906243425
AT4G12890_at 0.687701147246586 1.07528311309803 0.617512792843444 1.03132452773865 0.48481017374204 0.888424327381783 0.726197608359639 1.28015361849946 0.980068051408787 1.01387685047783 1.29916939829021 1.09942880069724 1.08763036791922 0.741009376448515 1.13995749514609 1.04034617940092 0.860037946437291 1.25081842101265 1.1123371338151 0.195039792467990 0.192156153322743 0.19632988431177 0.192275196563695 0.204909688769201 0.192156153322743 0.201960501152569 0.200191104322816 0.204978269203798 0.207714171347493 0.198693847720817 0.197065993748249 0.203785108464938 0.192448378779422 0.199804736098614 0.207529768871071 0.207345987531375 0.201882935823552 0.192441900452525 4 4|0 +|/ 7546543 7547430 7547106.556 7546375 7547639 + gene protein_coding_gene FALSE TRUE AT4G12890.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein [Arabidopsis thaliana] (TAIR:AT4G12900.1); similar to Os03g0295800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049827.1); similar to putative legumaturain [Oryza sativa (japonica cultivar-group)] (GB:BAD73620.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Gamma interferon inducible lysosomal thiol reductase GILT; (InterPro:IPR004911) -0.07872175671967 -0.636909484883012 0.537352922006623 1 -0.408707904108479 1.89903946031516 -0.07872175671967 0.153934198192986
AT1G32660_at 1.07984457898146 1.52033600362595 1.96221453033222 1.56672480095936 1.50038155644635 1.46182777060941 1.97407813969355 1.78759335568579 1.90005624682626 2.17601469270177 1.35433686414433 1.88020988024835 1.96742813011388 2.10940572848594 1.66035965611587 1.49341102312468 1.9084863181145 1.81587847883249 1.73952057790692 0.22693824520371 0.215839090266770 0.214120380743573 0.221732937134422 0.219535740054387 0.221928137348832 0.222699284154768 0.214120380743573 0.217597113385484 0.224281266920006 0.220272819322257 0.223649501057543 0.218309243190001 0.220274795048241 0.222257286262691 0.226789341608523 0.226268202825459 0.226186753169336 0.214440475431861 1 1 + 11811791 11812291 11812043.545 11811020 11812360 + gene protein_coding_gene FALSE TRUE AT1G32660.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G30790.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0662584254119989 -0.636882158314047 0.537370066808274 1 -0.408724852032184 3.46273509989634 -0.0662584254119989 0.107615485307931
AFFX-TrpnX-5_at 0.963570730827081 0.93581818066134 1.00118315184654 1.00666228472332 0.860709990097556 0.885773476372646 1.10766704177760 1.06067240576425 1.30830848132100 0.878385450961185 1.13597174802647 0.987251064822245 1.38809612921752 1.1754467149085 1.22255596410777 0.753257084102005 1.32413743915956 1.17646047439066 0.703884109060401 0.149271672455038 0.152611118018767 0.154308688582225 0.152994328658834 0.149777840215835 0.150440978892227 0.150696491515070 0.150320673752678 0.160923517355521 0.158556398240126 0.149997067417106 0.152307797022885 0.150944831337511 0.15428395807387 0.153403613293335 0.157332368100729 0.152130047858243 0.155712702048346 0.153993138868498 NA NA NA NA NA FALSE FALSE 0.0517605997817143 0.636833068975153 0.537400866450129 1 -0.408755295529027 2.03221870332014 0.0517605997817143 0.0104363571735662
AT1G68340_at 2.43050338512095 2.91675120103797 3.05938965816161 3.00611051794118 2.79580071840300 2.25122087246810 2.50500308116400 2.56882908599471 2.97054872884413 2.65280401517906 2.64703880536434 2.58156719906738 2.13478419856478 2.81672796888387 3.0894048216997 2.83296717628945 2.86140935552522 2.42908053084902 2.49026415160405 0.188266750669827 0.192120643533455 0.190698336589510 0.187181353943744 0.199462797685416 0.189305808778357 0.195296654920836 0.19545908670739 0.201441703813334 0.190168211745946 0.194881670046376 0.198327889970067 0.192625929810622 0.198220290960941 0.196844139493215 0.191658548619414 0.198297288629724 0.197382144101978 0.190479657167287 1 1 - 25618188 25618818 25618553.545 25617860 25619066 - gene protein_coding_gene FALSE TRUE AT1G68340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25370.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79894.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) 0.0712211476177282 0.63676403320918 0.537444182597867 1 -0.408798105440805 5.38103180115622 0.0712211476177282 0.127158863347796
AT1G75850_at 6.80970500235995 6.67771615404054 7.12442422332163 7.11520216083832 7.5970761770669 6.72980626311421 7.04423747423178 6.54157506732293 6.48103348541764 6.45490147947823 5.90334695780438 6.25854001485506 6.54307749356758 6.18238527421464 5.90592088828617 6.47196942635133 6.99608717631035 6.6024546550185 6.74795211701914 0.210949768427043 0.194860737312799 0.193741398275096 0.198815913174134 0.198819325608411 0.21304536096232 0.198357936303423 0.193878576564315 0.205169906012358 0.204663198842393 0.201574744134547 0.198555419540234 0.196672557564482 0.209103018589724 0.202992564407226 0.193748927929742 0.197960765589472 0.201485985576935 0.204622539686554 1 0|1 /|- 28481782 28482532 28482094.5 28481429 28487589 - gene protein_coding_gene FALSE TRUE AT1G75850.1 similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:AT3G51310.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17790.1); similar to Zgc:136268 protein [Danio rerio] (GB:AAI17574.1); similar to novel protein simlar to human and mouse vacuolar protein sorting 35 (yeast) (VPS35) [Danio rerio] (GB:CAE49237.1); similar to Os03g0801600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051593.1); contains InterPro domain Vacuolar protein sorting-associated protein 35; (InterPro:IPR005378) 0.0849979117128963 0.636709350687282 0.53747849429675 1 -0.408832011693102 13.4146020301734 0.0849979117128963 0.174976382833947
AT2G25580_at 3.75472495928347 3.81156361935367 3.64144254492861 3.64580373452275 3.91060517982976 3.78536004491965 3.98949801897509 4.21516256629071 3.56284011301899 3.41574571208752 3.32017539958033 3.65839143688653 3.69705828486555 3.65816005835635 3.48963528149972 3.77127109198828 3.77827921084059 3.53609834817285 3.59865224226997 0.182537516949838 0.184492783713186 0.18917319051168 0.189214118792249 0.182915811930037 0.182537516949838 0.193158334962825 0.194653492898606 0.192565078988998 0.184625660094276 0.184800228920350 0.182537516949838 0.190550637640642 0.182537516949838 0.191554429358877 0.187303391117189 0.187305728245135 0.186110440848143 0.190645904258277 2 2 + 10896503 10896994 10896712.727 10895092 10897445 + gene protein_coding_gene FALSE TRUE AT2G25580.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G32450.1); similar to Putative selenium-binding protein, related [Solanum demissum] (GB:AAT66765.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0545233991802961 -0.636615211014391 0.537537567161294 1 -0.408890377312913 7.41395991425427 -0.0545233991802961 0.0457403102600493
AT3G20580_at 1.51064303641782 1.42503828448394 1.82529880393821 1.67050067366367 1.29553983883471 1.47477016130828 1.25304187571247 1.78439905857232 2.24421025460098 1.90783902539047 1.99364334562838 1.58215121285618 1.61830243362184 1.60319583320488 1.971430497645 1.92783180641813 1.90871438992652 1.98371246295288 1.92740294776321 0.160060192031745 0.158516788375754 0.161633644895975 0.158516788375754 0.161601748200973 0.161924743341894 0.165158592732671 0.167751812407952 0.165070813658584 0.158516788375754 0.160074456420695 0.163468996011842 0.164340687871115 0.166068435761186 0.158516788375754 0.159782413042287 0.169647999139404 0.167276326992931 0.163281179309233 3 3 - 7188078 7188561 7188318.545 7187862 7190568 - gene protein_coding_gene FALSE TRUE AT3G20580.1 phytochelatin synthetase-related Identical to COBRA-like protein 10 precursor (COBL10) [Arabidopsis Thaliana] (GB:Q9LJU0); similar to phytochelatin synthetase-related [Arabidopsis thaliana] (TAIR:AT4G27110.1); similar to ATSEB1 [Arabidopsis thaliana] (TAIR:AT4G16120.1); similar to phytochelatin synthetase-related [Arabidopsis thaliana] (TAIR:AT3G16860.1); similar to cobra-like protein 10 precursor [Medicago truncatula] (GB:ABE91155.1); similar to Os06g0685100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058397.1); similar to Phytochelatin synthetase-like conserved re (GB:ABE84746.1); contains InterPro domain Phytochelatin synthetase-like conserved region; (InterPro:IPR006918); contains InterPro domain Cellulose-binding family II/chitobiase, carbohydrate-binding; (InterPro:IPR012291) -0.064807261248457 -0.636327806010476 0.537717937528927 1 -0.409068516158728 3.4549573784664 -0.064807261248457 0.101757702002343
AT1G23530_at 3.08738984894928 2.90082629410036 2.91306705280981 2.51893018347175 2.41361552594187 2.64938723605333 2.58114559967517 2.93145260048358 2.97075359383350 2.77578761039119 2.90550648428614 3.27916030558359 2.85374342326194 3.21532155300088 3.28589083229312 3.23557853149472 2.81446387785410 3.15375332436402 2.3843892096520 0.227073108358122 0.2316877864982 0.245413389497004 0.245082553525678 0.228786494781573 0.249630653194398 0.229166509290076 0.242720956388882 0.229797764983715 0.229065625499587 0.225620189546848 0.232977497391017 0.238210917532851 0.233126159552009 0.226185925391208 0.22575367206846 0.228281014294783 0.229395466212957 0.225620189546848 1 1 + 8345912 8346392 8346099.636 8345584 8346638 + gene protein_coding_gene FALSE TRUE AT1G23530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70470.1) 0.0655817836627527 0.63631339287243 0.537726983877541 1 -0.409077447728933 5.65109550742375 0.0655817836627527 0.105044769071285
AT1G27240_at 2.12296090148835 2.25519518249304 2.31848678909363 2.23477141640128 2.14176690119895 1.95070299923103 2.43736638600368 2.20706249390325 2.28811626562046 2.04078949910494 1.97408091749846 1.97207263599017 2.451527901282 1.75889981081526 1.96467338441260 2.41044784975181 2.18558967094865 2.49966313451775 2.18220259426046 0.20635812223444 0.203751375226113 0.202052423048876 0.202623394711360 0.204646949513018 0.201922065529991 0.206243793180265 0.218260431163051 0.213055600962164 0.203735035055773 0.214988460806843 0.208636998879807 0.203996267680709 0.200888290251473 0.210087167487773 0.206983731751755 0.210377336533287 0.208005531445463 0.200888290251473 1 1|0 +|/ 9466247 9466648 9466504.4 9466224 9467063 + gene protein_coding_gene FALSE TRUE AT1G27240.1 paired amphipathic helix repeat-containing protein similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G24210.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) -0.0562321271670292 -0.635824936765557 0.538033613034898 1 -0.409380025071694 4.36978356680034 -0.0562321271670292 0.058440092624554
AT1G80960_at 6.8021736487943 6.94020017548107 7.03849430483208 7.09981751786153 7.94966996078608 7.36929288466373 7.23512727713295 6.86624111407078 7.30049296888818 7.09683264080106 6.26065280194689 6.71489144773202 6.79495059034575 6.57842208973921 5.58341332402713 6.94991426204387 6.76870468792611 6.4857807905113 6.78237896181796 0.217045473340861 0.224447221817347 0.223738625578012 0.222838933190676 0.219534634577898 0.228743461542448 0.214183999677891 0.217001374673996 0.227739559854754 0.230293240687948 0.225990926730007 0.217289124450278 0.220964093641061 0.214396032190267 0.245525749548442 0.215765537062176 0.221996767905146 0.223635442347665 0.224641153331295 1 1 + 30422354 30423076 30422800.364 30420729 30423215 + gene protein_coding_gene FALSE TRUE AT1G80960.1|AT1G80960.2|AT1G80960.3 F-box protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67390.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91318.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.069713580692811 -0.63576993193267 0.538068148695319 1 -0.409414084741825 13.9511234970127 -0.069713580692811 0.121844052893464
AT3G29320_at 10.2323404950992 10.3152602774628 9.429030553735 9.40046736042924 10.1441427328232 9.66352787735334 9.881154532857 9.52899800967555 10.3828813762638 10.2353944749859 10.9356769197330 11.0595096356972 10.1893704961905 10.7500077527199 10.9476254645861 10.2156502393546 9.78430906694823 10.7782226709505 9.74699577447377 0.113642630390672 0.113412804776909 0.121681335546830 0.117679481359255 0.113896272083156 0.121744572761881 0.119291426470843 0.113786522707609 0.120535135371979 0.113712308174899 0.113354505601991 0.115022664830702 0.115267575903267 0.113740671166017 0.11478676365447 0.115941374212429 0.121488497176052 0.126600490958374 0.115783977275324 3 3|0 +|/ 11257842 11258761 11258400 11254044 11259051 + gene protein_coding_gene FALSE TRUE AT3G29320.1 glucan phosphorylase, putative Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. similar to ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2), phosphorylase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G46970.1); similar to Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor (Starch phosphorylase L) (GB:P27598); similar to starch phosphorylase (EC 2.4.1.1) isoform L precursor, chloroplast - fava bean (GB:S47243); similar to Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor (Starch phosphorylase L) (GB:P53536); contains InterPro domain Glycogen/starch/alpha-glucan phosphorylase; (InterPro:IPR011833); contains InterPro domain Glycosyl transferase, family 35; (InterPro:IPR000811) 0.0653215622547934 0.635687753479459 0.538119748114958 1 -0.409464965585371 20.1765170996029 0.0653215622547934 0.104220927051493
AT1G32220_at 10.4259964308122 10.5414497249335 10.8687710296023 10.6328933295706 11.0587787860034 10.5292982155601 11.3542812084802 11.1652261742507 10.7815825503356 11.0681408108704 11.2259368448134 11.2265732672622 11.2275800885871 11.1708300674287 11.0390167651029 11.5961604145332 10.7200724382288 11.2003864567795 10.9833708118595 0.0996534338504688 0.100407656718081 0.104130734929927 0.104837457989428 0.0960600413674418 0.103791071693577 0.100622732772595 0.100747171259282 0.10931117504201 0.0970057486204584 0.0960600413674418 0.0960600413674418 0.0963829065393034 0.104135803462531 0.0982734045515194 0.096660962226082 0.121744429179252 0.101029559469038 0.0960600413674418 1 1|0 +|/ 11608964 11609507 11609264.2 11607834 11609713 + gene protein_coding_gene FALSE TRUE AT1G32220.1 catalytic/ coenzyme binding similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT5G10730.1); similar to Os04g0403500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052699.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96868.1); similar to Os02g0556100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047127.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.0660758870258988 0.635660757991784 0.538136699059306 1 -0.409481678534693 21.8821789960002 0.0660758870258988 0.107385854840495
AT3G28230_at 1.7567808314218 1.40689213477785 2.05554520919998 2.05517179945293 1.00359390362514 1.31625476179448 1.90484395860763 1.93092761457613 1.68632894887022 1.85363322947259 1.92182152506204 1.79247851783460 1.77300393510533 1.92732584636092 1.81038084828031 1.42978154741980 1.80670264987628 1.82331953281200 1.75192703823890 0.187411707656041 0.188042814787571 0.189033416463651 0.190708255678222 0.191168357843117 0.191450406755611 0.190137293137040 0.191291199725880 0.203121184548780 0.187411707656041 0.187411707656041 0.190595929244279 0.187917191112610 0.187411707656041 0.190355546418782 0.191784674071235 0.196065797097774 0.195019661878687 0.195305449832429 3 3|0 +|/ 10530756 10531410 10531155.333 10530551 10531436 + gene protein_coding_gene FALSE TRUE AT3G28230.1 similar to Sas10/U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to Integrase core domain containing protein [Solanum demissum] (GB:ABI34329.1); contains InterPro domain Sas10/Utp3; (InterPro:IPR007146) -0.0602904940888547 -0.635603652710472 0.538172557484897 1 -0.409517030346421 3.4535337129509 -0.0602904940888547 0.0813282187817266
AT4G25050_at 10.8935202163542 11.0681880960197 10.8854171060273 10.6393935410954 11.2012255754283 10.8651698213061 11.8500000079042 11.6025668898494 12.0826958250410 11.7664916265229 12.4638113588943 12.5501396200210 12.0528623357496 12.105786102657 12.6066111126554 12.1012847753003 11.7638619186931 12.1501811180779 11.8278660311736 0.0888553664265797 0.0838487091514528 0.0873252029291986 0.0861320489628743 0.0856916265930184 0.089894096551157 0.0843442307599006 0.0872129853379871 0.090384676231993 0.0842745384534162 0.0820775815069519 0.0820775815069519 0.0820775815069519 0.0853704765234012 0.083555946071671 0.0823725717013344 0.0885094857127434 0.0820775815069519 0.0820775815069519 4 4|0 +|/ 12870203 12870977 12870574.222 12870077 12871231 + gene protein_coding_gene FALSE TRUE AT4G25050.1 ACP4 (ACYL CARRIER PROTEIN 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. similar to ACP1 (ACYL CARRIER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G05020.1); similar to acyl carrier protein [Olea europaea] (GB:AAL25091.1); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) -0.0619005798620145 -0.635567143439019 0.538195483665637 1 -0.409539630378017 23.1840193835824 -0.0619005798620145 0.0891177887669958
AT1G11610_at 1.73436118254279 1.08027794801201 1.45329497363441 1.32867462924433 1.20752579643658 1.16639918612868 1.28390716015081 1.38198344227711 1.60300424364475 1.48398682887048 1.50524655138591 0.777466190587132 1.43097803072674 1.35714969094083 1.62671935593245 1.47109879673203 1.59225087287168 1.67616047653545 1.36860198024914 0.161535526297464 0.165905591778802 0.159993692210896 0.164318312069801 0.162342859331966 0.159993692210896 0.159993692210896 0.167469181215583 0.168259697385916 0.165295165990785 0.160777297101155 0.164728478114983 0.167543853681463 0.166634200139349 0.161124989700027 0.162242562995742 0.160508233011386 0.171880840706614 0.167642415427327 1 1|0 -|/ 3907489 3907927 3907626.778 3907461 3909291 - gene protein_coding_gene FALSE TRUE AT1G11610.1 CYP71A18 (cytochrome P450, family 71, subfamily A, polypeptide 18); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71A18 (EC 1.14.-.-) (CYP71A18) [Arabidopsis Thaliana] (GB:Q9SAB6); similar to CYP71A13 (cytochrome P450, family 71, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G30770.1); similar to CYP71A14 (cytochrome P450, family 71, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G24960.1); similar to CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G30750.1); similar to Cytochrome P450 71A27 (GB:O65438); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0683613627127211 -0.635498746891021 0.538238435129626 1 -0.409581966100778 2.78696875478775 -0.0683613627127211 0.116688831516849
ATCG00660_at 9.41538363556095 10.2267382246287 10.3099906477763 10.4915779442496 10.1936231796875 9.86487752894274 10.1639346105763 10.3432730770558 10.7794582073008 10.8864412634854 10.9230720596993 11.6328080484805 10.6503797185245 10.690185075704 10.8308250262504 11.0248898763387 10.3333321383972 10.8874184776805 11.0039257830327 0.125508131471790 0.120277106647909 0.119926177280289 0.123915053322184 0.115899516854972 0.118024884146748 0.119959249742498 0.126355598068223 0.126458472405806 0.121700491570999 0.124362577870431 0.119289086678304 0.124533449922526 0.123322261501135 0.122714800179785 0.117086030491557 0.125987674804619 0.124663327788421 0.124030053809806 C C - 68557 68829 68732.182 68512 68865 - gene protein_coding_gene FALSE TRUE ATCG00660.1 encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L20 (rpl20) [Arabidopsis Thaliana] (GB:P56794); similar to ribosomal protein L20 family protein [Arabidopsis thaliana] (TAIR:AT1G16740.1); similar to ribosomal protein L20 [Nicotiana tabacum] (GB:NP_054524.1); contains InterPro domain Ribosomal protein L20; (InterPro:IPR005813); contains InterPro domain Ribosomal protein L20, bacterial and organelle form; (InterPro:IPR005812) 0.0796784947850124 0.635493934100926 0.538241457525483 1 -0.409584944936999 21.0069526330134 0.0796784947850124 0.157803290528906
AT3G24220_at 2.29238042637507 1.62087622447427 2.20494597949563 1.95706147207718 1.59982530617331 1.91632158178838 1.87420160745237 1.91950951235778 2.19863391758808 2.01787786672686 2.32827092499262 1.96271170382138 2.04788837725434 2.10897743826425 2.22641279988072 1.76772092804172 2.33880788462323 1.85165957440575 1.55900295790664 0.237535716941315 0.225626649212164 0.225626649212164 0.235182669905875 0.231097327653281 0.229351818679602 0.232823146040289 0.228412742259885 0.231188698907155 0.231448743959635 0.225626649212164 0.22978927495985 0.22637675670179 0.225626649212164 0.235468696021127 0.236487177042069 0.226483423053665 0.235220194461137 0.230127102923998 3 3 + 8762593 8763112 8762821.455 8761441 8763179 + gene protein_coding_gene FALSE TRUE AT3G24220.1 NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to NCED9 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9) [Arabidopsis thaliana] (TAIR:AT1G78390.1); similar to putative 9-cis epoxycarotenoid dioxygenase [Daucus carota subsp. sativus] (GB:ABB52078.1); similar to Lactuca sativa 9-cis-epoxycarotenoid dioxygenase 4 (GB:BAE72093.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) 0.0733406326943629 0.635176400732908 0.538440887585723 1 -0.4097814335507 3.92525415609976 0.0733406326943629 0.13566727634589
AT2G20940_at 3.46590598590074 3.31746028194094 3.45695681260460 3.78028453299401 2.55484366866114 3.32392300861815 3.37617386646518 3.34442954405657 2.55608665527943 2.46785920099624 3.13786253079686 2.6876069742618 2.51341073033415 2.65757710444334 3.27906403013681 2.53940512472942 2.87000889036988 2.70363708807859 2.62218363464217 0.187345884500803 0.185269365515770 0.190713813419367 0.187405538645571 0.186546718492413 0.194248094556493 0.184819905491847 0.190481565642075 0.194459960944945 0.196252013107883 0.186013415166693 0.185561867468205 0.186135218757169 0.182862365825627 0.186205411517494 0.184744527600586 0.185124996035646 0.185929616784631 0.183000130209373 2 2 - 9009347 9009710 9009534.273 9009113 9009782 - gene protein_coding_gene FALSE TRUE AT2G20940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27290.1); similar to Os09g0541600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063815.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79191.1); contains InterPro domain Protein of unknown function DUF1279; (InterPro:IPR009688) 0.0764356574832658 0.635149183125723 0.538457983851583 1 -0.409798271499131 6.00113790738007 0.0764356574832658 0.146746648367527
AT1G80340_at 1.87664264792889 1.59256582147356 1.95220162732425 1.89057873166854 1.82688664333197 1.38877628713651 1.79326108665768 1.82516996235542 2.20271272935685 1.85500693714176 1.67225101768229 1.78027319982067 1.46001537687074 1.77332235061049 1.95188741476597 1.50150717013604 1.88422875147774 1.84774202413013 1.49581920616246 0.220258035948876 0.225164580333452 0.223717418377127 0.22280612065443 0.226733629758116 0.227966311061888 0.220258035948876 0.220837490307664 0.223327323599024 0.229135740558376 0.220658034884605 0.223081940103160 0.232628735065076 0.221903934808378 0.223629298592994 0.221487250712680 0.228566884564564 0.234534583397203 0.225856446069590 1 1 - 30205645 30206038 30205820.636 30205585 30207092 - gene protein_coding_gene FALSE TRUE AT1G80340.1 GA4H (gibberellin 3 beta-hydroxylase); gibberellin 3-beta-dioxygenase Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. Identical to Gibberellin 3-beta-dioxygenase 2 (EC 1.14.11.15) (Gibberellin 3 beta- hydroxylase 2) (GA 3-oxidase 2) (AtGA3ox2) (GA4H) [Arabidopsis Thaliana] (GB:Q9ZT84;GB:Q9C970); similar to GA4 (GA REQUIRING 4), gibberellin 3-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G15550.1); similar to (GB:BAD91162.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0622876341360844 -0.63503817118114 0.538527717293714 1 -0.409866941225243 3.56080186968816 -0.0622876341360844 0.0911549544852411
AT2G45320_at 5.65119771536337 5.70669246755793 5.80252434117117 5.61334596246624 6.05323972859557 6.12031893348198 5.50639911252282 4.97609187734687 5.59023980692188 5.2732523147228 4.88491231556662 4.86936754447812 4.79782825635961 5.01274489915872 4.67242894604825 5.12577927663521 4.55244114862033 5.11028850774494 5.46656967000171 0.220135794193174 0.208019121400029 0.207127122592210 0.214234150093895 0.209434013328564 0.206235285625492 0.205652179897069 0.215071269289478 0.211387722061702 0.205652179897069 0.215505368590854 0.205652179897069 0.216783457972985 0.205652179897069 0.210416264516387 0.206182675946803 0.213036474291774 0.205652179897069 0.205652179897069 2 2 - 18691467 18692551 18691816.1 18691190 18693219 - gene protein_coding_gene FALSE TRUE AT2G45320.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93197.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448); contains domain no description (G3D.3.90.550.10) -0.063934060245662 -0.634924663881421 0.53859902357412 1 -0.409937143069664 10.8395151635009 -0.063934060245662 0.0985946214810306
AT4G31805_at 0.967232027433943 0.814175470492318 0.858476648063877 0.795668146444462 0.980547764121292 0.93797826194996 0.549227884747723 0.775151296952034 1.4177999921652 0.874049213222066 0.584066447523294 1.02717955072652 1.14638517356719 1.16379449505166 1.32207395068024 0.625347611998716 1.21684644501183 1.33261317533435 0.886803464037342 0.182567855244263 0.196139357586811 0.183450813700858 0.186212679790558 0.185141460308343 0.185251480813000 0.192671472212665 0.193598972576860 0.184801979090675 0.191539784064213 0.185703342130915 0.182597097065413 0.194508556856815 0.183674142140140 0.182076370401209 0.189752647830813 0.188648361039987 0.190471624496234 0.189731362344482 4 4 + 15386078 15386755 15386434.091 15385286 15386988 + gene protein_coding_gene FALSE TRUE AT4G31805.1 WRKY family transcription factor similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT5G10890.1); similar to Os06g0184200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056991.1); similar to Os02g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048383.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72515.1) 0.0547292508334573 0.634105892565537 0.539113543149861 1 -0.410443192444701 1.89072681054816 0.0547292508334573 0.0490159634458626
AT3G25530_at 10.1608214745941 10.1251493608740 10.2906183004015 10.1846136723421 10.4709589629823 10.0446041673266 10.5823267469231 10.2954247494356 10.0837140214618 10.5866185140470 10.5842155615998 10.6461689298367 10.3758757790234 10.2714600139520 10.6311140924206 10.5554212968348 10.2835720984454 10.5368820006156 10.2838833951162 0.104009233811084 0.104537758793629 0.103484379505942 0.104606278557567 0.100488190716061 0.104667469347173 0.0993278171228732 0.102302425516243 0.107394579165656 0.100360989425992 0.0999810692020868 0.102060307576244 0.100221201178162 0.108715393891653 0.0999707704962331 0.101254342377645 0.103705116946005 0.101199284176758 0.0992015409643037 3 3|0 -|/ 9273187 9274033 9273503.889 9273037 9274852 - gene protein_coding_gene FALSE TRUE AT3G25530.1|AT3G25530.2 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein|ATGHBDH/GHBDH; phosphogluconate dehydrogenase (decarboxylating) Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance. similar to phosphogluconate dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT1G17650.1); similar to 3-hydroxyisobutyrate dehydrogenase family protein [Geobacter uraniumreducens Rf4] (GB:ZP_01140314.1); similar to Os02g0562700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047154.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183) 0.0621424687612673 0.633868422419993 0.539262823101473 1 -0.410589850320789 20.6711450285929 0.0621424687612673 0.0910143570018098
AT3G16810_at 4.45698043795919 5.34680094455018 4.79923546028846 4.87110744264386 4.01032051567543 4.68268209129311 4.25608205325506 4.82894344385048 3.47389258650074 3.99315181380509 3.6946162826845 4.22741783174492 3.5979963963319 3.35434306048452 3.70890160488807 3.85621005027006 3.72688246841275 3.76609871541993 3.95166573109098 0.205766580168434 0.205200742942321 0.19607610927028 0.199521644301256 0.197035859576480 0.195934793880213 0.200282826656524 0.195419858244244 0.202138316415935 0.194230469336327 0.199233161243321 0.199825272214920 0.198490484631228 0.198087310334458 0.192045430647427 0.192045430647427 0.201998829995739 0.199032504558428 0.196333337132527 3 3 - 5723538 5724485 5723933.091 5723255 5727626 - gene protein_coding_gene FALSE TRUE AT3G16810.1 APUM24 (ARABIDOPSIS PUMILIO 24); RNA binding similar to APUM5 (ARABIDOPSIS PUMILIO 5), RNA binding [Arabidopsis thaliana] (TAIR:AT3G20250.1); similar to Os03g0831100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051791.1); similar to Puf family RNA-binding protein (ISS) [Ostreococcus tauri] (GB:CAL55619.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.0980218758072668 -0.633659412217063 0.539394231967611 1 -0.41071888980494 8.43041655456206 -0.0980218758072668 0.2173325704679
AT4G01240_at 0.940976937110543 0.877117358486698 0.959493650893231 0.597740747672871 0.682579245640142 0.857346749478084 0.946598999613917 0.789313106490965 1.02736009773089 1.03635301147102 0.74464741295231 1.13948393180596 1.10390347482193 0.759990562646107 0.988033951474986 0.677268412318308 0.98097103658019 0.881675514736606 0.675910599088461 0.211395194189711 0.206985742713557 0.206985742713557 0.213087256555817 0.207219340716868 0.208266388839673 0.209109221064398 0.206985742713557 0.208730340034377 0.206985742713557 0.208659160076228 0.215911044204347 0.211194305995719 0.206985742713557 0.211616494247795 0.209795397466796 0.206985742713557 0.213631224269540 0.210889072533369 4 4 - 517795 518334 518124.091 517795 521972 - gene protein_coding_gene FALSE TRUE AT4G01240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05390.1); similar to Os06g0474300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057631.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE93735.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) -0.0589613088004278 -0.633578316171051 0.539445223598046 1 -0.410768946596213 1.74274819438856 -0.0589613088004278 0.0754775771313119
AT1G68040_at 1.03728575252187 0.915450544015454 1.10929158612415 1.14363123497109 0.98193081462644 0.89054237827473 0.779801826787446 1.13485447221657 1.39228796060994 1.21108338114042 1.14504380131178 1.11947756748110 0.982849535264145 0.993761904173952 1.34011462703265 0.776743653336099 1.30940280892312 1.24155253805305 1.27563842329936 0.202232515324191 0.199674844287017 0.20261310152927 0.202668466990699 0.205883177627138 0.202922016024119 0.212696195682233 0.206196337664830 0.206414306196285 0.213574977562703 0.200874184361542 0.207572426250260 0.209512662941962 0.200518607940104 0.206329158354612 0.203697749885410 0.209935866829876 0.207672165287923 0.206468355592908 1 1 + 25508198 25508852 25508600.273 25506539 25508895 + gene protein_coding_gene FALSE TRUE AT1G68040.1 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to methyltransferase-related [Arabidopsis thaliana] (TAIR:AT5G38100.1); similar to SAM dependent carboxyl methyltransferase [Medicago truncatula] (GB:ABE92230.1); contains InterPro domain SAM dependent carboxyl methyltransferase; (InterPro:IPR005299) -0.0574420479779091 -0.633481382046954 0.539506177526598 1 -0.410828771728502 2.202409355924 -0.0574420479779091 0.0671214006960463
AT1G74990_at 1.30103396022932 2.0981849468065 1.75548957523715 2.16887418278576 1.31211802106055 1.10086716870812 1.63580429396192 1.80620288947736 1.61241068756109 1.97413811970183 1.5506791904527 1.49727363205777 1.38497821215769 1.93182756790325 1.85133954740399 1.35168995879212 1.28651524372225 2.29120467325875 1.44962760805165 0.231718137140920 0.227265284253756 0.221657580637288 0.224800981293169 0.220010912517012 0.22565078509792 0.219459291650698 0.221422320540015 0.221244430172141 0.219105960798689 0.227197051512915 0.218268673072553 0.229293740536976 0.224681994063274 0.224313240402448 0.221441936727502 0.227358925706295 0.227156467516596 0.223051841573977 1 1 - 28163521 28163885 28163670.455 28163376 28164148 - gene protein_coding_gene FALSE TRUE AT1G74990.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G19310.1); similar to Os12g0636000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067361.1); similar to Os01g0766200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044354.1); similar to putative RING finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53343.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0807531271119195 -0.6333994795328 0.539557682379471 1 -0.410879313166744 3.30827886727838 -0.0807531271119195 0.162339584531274
AT3G22050_at 0.57349920580542 0.57242352179883 0.326215854052343 0.974823098383694 0.301243734522856 0.99186407700395 0.677977627970937 0.336291378065116 0.848768270668085 0.753880765303792 0.35503377214144 0.566768421779374 0.759371347252944 0.800375019159213 0.969577278264034 0.934524331426389 0.931462328150174 0.937556115674795 0.562246760132328 0.194438410146968 0.192136606586667 0.192584837293150 0.195058291852722 0.194145235481390 0.197642992751895 0.196708492315908 0.198976404130731 0.195249655255126 0.209330596425553 0.199476435910806 0.193571537590209 0.198058149594298 0.199573416819698 0.196566074665121 0.193534922050192 0.192174996208827 0.204890041888289 0.198919752810973 3 3 + 7764302 7765045 7764580.9 7764138 7765150 + gene protein_coding_gene FALSE TRUE AT3G22050.1 receptor-like protein kinase-related similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G22040.1); similar to Os07g0537500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059875.1); similar to serine/threonine kinase receptor precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57307.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 0.0843452011384727 0.633374102255808 0.539573641592664 1 -0.410894972072738 1.34602506658328 0.0843452011384727 0.174296071975693
AT1G79690_at 8.82395166552799 8.8091315098508 9.12826427248229 9.17584801343988 9.00143593372135 8.6309841536858 8.91946096154466 8.80664512308315 8.56848163149407 8.6412308112424 8.50776128888148 8.63649287651635 8.51817095605442 8.56420767201424 8.54514677154564 8.61532101071733 8.40557511605996 8.69210411983768 8.5601465169651 0.132443566357713 0.135574375478887 0.137639962830478 0.137367716024876 0.130689295511212 0.137965284617522 0.130813333390599 0.140470649950153 0.134200686614126 0.137143088097591 0.130775099187563 0.129310688452787 0.133257112691148 0.134522457194048 0.131322603143497 0.125197589783759 0.132197181544479 0.133100788122752 0.130437509080191 1 1 + 29994063 29995023 29994593.091 29990069 29995281 + gene protein_coding_gene FALSE TRUE AT1G79690.1 ATNUDT3 (Arabidopsis thaliana Nudix hydrolase homolog 3); hydrolase Identical to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3) (NUDT3) [Arabidopsis Thaliana] (GB:Q8L831;GB:Q8GY80;GB:Q93ZN1;GB:Q9MA07); similar to IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT5G16440.1); similar to IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT3G02780.1); similar to MutT/NUDIX family protein [Solibacter usitatus Ellin6076] (GB:YP_822815.1); similar to Os02g0793300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048368.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Isopentenyl-diphosphate delta-isomerase, type 1; (InterPro:IPR011876); contains InterPro domain Isopentenyl-diphosphate delta-isomerase; (InterPro:IPR002667) 0.0574901341084368 0.633160878298877 0.539707744134585 1 -0.411026517828058 17.4872404356773 0.0574901341084368 0.0675679927193448
AT1G22540_at 6.35723029117122 6.9264109217521 5.96031091741238 6.74594737883683 7.0370821026641 6.5636491923882 6.4179692225754 6.65975174526145 6.38069232899867 6.70740548918683 6.68868720193964 6.25574625615503 6.74028684372997 7.28035971460989 6.5421942134387 6.36313883940718 6.01227189514443 6.83253962159565 6.10156930241548 0.202094359982120 0.213216985300778 0.209616080552839 0.208950560067678 0.198946493407528 0.216203189633844 0.199347876196892 0.198946493407528 0.202239750322075 0.201708667395593 0.198946493407528 0.198946493407528 0.201708241426263 0.203792488254002 0.202658454562152 0.201600618039815 0.215280180524329 0.199257451211828 0.211722128649136 1 1 + 7965641 7966152 7965918.545 7964031 7966425 + gene protein_coding_gene FALSE TRUE AT1G22540.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72130.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72140.1); similar to putative oligopeptide transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD82719.1); similar to OSJNBb0008G24.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB86548.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.0896271095104508 0.633143369082522 0.539718757020272 1 -0.411037318094504 13.0765233615675 0.0896271095104508 0.19144169728505
AT3G13460_at 8.66944155897111 8.9951927940234 8.3879691209453 8.62140561978467 8.3606080020148 8.58254850113633 7.95881300354641 8.74792444263986 8.50915344612388 8.5399751589336 9.18146189285503 8.8487095866219 8.88073645733595 8.80804920779035 8.63532189616916 9.17583169425339 8.76866968824691 7.96028705515661 8.5079480048585 0.154516972034649 0.146993998259401 0.152329892011556 0.14826501274301 0.155984677400009 0.154054526559828 0.146681025210506 0.144683182233693 0.152264324207562 0.141964683147679 0.140804775595731 0.144629027157116 0.140804775595731 0.150025670897709 0.150142726017557 0.144251098923995 0.147370770020618 0.147324631241919 0.148081976457070 3 3|0 -|/ 4385293 4386114 4385618.5 4384721 4388508 - gene protein_coding_gene FALSE TRUE AT3G13460.1|AT3G13460.2|AT3G13460.3|AT3G13460.4 ECT2; protein binding|ECT2 Physically interacts with CIPK1. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55500.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE87461.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.0793238796700424 0.632432097310821 0.540166238928321 1 -0.411475820924233 17.1911923661039 0.0793238796700424 0.157903340338237
AT4G17020_at 4.03189123993244 4.19783531066948 4.05504641720412 4.04240359487067 4.61639508702795 3.69149821332568 4.02905183050897 4.26117263938847 3.44582791107772 3.22482345456700 3.77089230732939 3.19154698443777 3.95124591378639 3.48213603465650 3.47974014442446 3.80277424209617 3.00746266171016 3.56447349531471 3.34424515672041 0.241536746310263 0.233784940004241 0.236303718776770 0.240127821482533 0.25548613609797 0.245783873939868 0.258065753648052 0.237030617611161 0.238750897779149 0.242810613519362 0.232896178240903 0.232896178240903 0.238073464155091 0.232896178240903 0.233313157316887 0.246330130402804 0.243054289596516 0.23481063375702 0.236499547632439 4 4|0 -|/ 9580781 9581046 9580896.667 9577795 9581411 - gene protein_coding_gene FALSE TRUE AT4G17020.1|AT4G17020.2 transcription factor-related similar to B0213E10.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86205.1); similar to OSJNBb0017I01.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE05735.1); contains InterPro domain Transcription factor Tfb2; (InterPro:IPR004598) 0.0821666025816687 0.632391948556948 0.540191504009151 1 -0.411500559269041 7.55045319849488 0.0821666025816687 0.167515803696209
AT2G26930_at 7.5433288195902 7.29964333241943 6.92950358147078 7.13845233388723 7.04741358688141 6.96192005099413 7.74280684136491 7.52772425510906 7.15680739117821 7.27747844131718 7.05914007463148 7.55930067232454 7.11009829869147 7.47953995418966 7.80908009039083 7.60006944742672 7.56685833558211 7.29963883487894 6.69035920955425 0.179399758659554 0.174011838848755 0.194413587290024 0.186410465382946 0.1805932657957 0.182287433374795 0.176991685116835 0.195233136793799 0.185025421173734 0.182189136318301 0.173944470296368 0.179270847121133 0.189451333175441 0.174984041313433 0.179413529128245 0.176910333849313 0.182908678984693 0.181189280434995 0.179770475083895 2 2|0 -|/ 11498913 11500173 11499638.222 11498785 11501344 - gene protein_coding_gene FALSE TRUE AT2G26930.1 ATCDPMEK (PIGMENT DEFECTIVE 277); 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. Identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (EC 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase) (CDPMEK) (ISPE) [Arabidopsis Thaliana] (GB:O81014;GB:Q9GI18); similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (Ripening-associated protein pTOM41) (GB:P93841); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; (InterPro:IPR004424); contains InterPro domain GHMP kinase; (InterPro:IPR006204) -0.0575680288239619 -0.632262513115231 0.540272960623907 1 -0.411580303262925 14.5123561306468 -0.0575680288239619 0.068485027368846
AFFX-ThrX-M_at 3.46192724062076 3.68674279124992 5.01639830843617 3.55859180358662 5.97904373837841 3.75685242788818 6.35873791078554 3.68846100357764 5.98817125367598 6.93492014568785 5.99154800251735 6.58778746463277 5.48813431282977 6.0112107532314 5.38248241251868 6.30923288688479 5.11099280258133 5.42042530359093 6.80935702671629 0.163105057413465 0.162386103624425 0.164638088558126 0.166565362010635 0.162395036034655 0.165131157298807 0.162397491654941 0.164849920134586 0.171063071789899 0.161388912748848 0.159593238439277 0.157690108671235 0.159075879215143 0.165716681744575 0.161280100895784 0.159508311134535 0.164078322327754 0.163088614217523 0.159688287914468 NA NA NA NA NA FALSE FALSE -0.255500866665559 -0.632104884815794 0.540372169115418 1 -0.411677396254385 10.6209491785863 -0.255500866665559 0.65313532770579
AFFX-PheX-3_at 4.6737694585742 5.09094182716045 5.71807635025768 4.70020843189924 6.54217312840242 4.70922288754611 6.97907623473017 4.7592481358367 7.13228289149015 7.59678834072546 6.833473764724 7.42994936430452 6.64327125481243 7.32846965292564 7.06260622064019 7.15910303645357 6.91617432189874 6.28892825108026 7.53335248525077 0.162034447612091 0.154451739395453 0.153198953789044 0.158162432876180 0.153507303264114 0.161835184205770 0.154738398762776 0.163270811046322 0.158236271574511 0.153139008534578 0.152221481819220 0.155168673136372 0.152611010399396 0.152570842612105 0.155025486875214 0.153875901280486 0.159741670024955 0.153397969706568 0.153224410659174 NA NA NA NA NA FALSE FALSE -0.210699818508109 -0.632061421324055 0.540399526107314 1 -0.411704164165888 12.5858670013894 -0.210699818508109 0.533318178833968
AT1G71090_at 8.88139744368724 9.28255684948692 9.23201167942386 9.38159724255242 9.23359529488082 9.14704097302983 9.26197080058723 9.49774503878852 8.60925749776217 9.14270113106077 8.86634595071694 8.8165662861385 9.19912620208798 8.93953639163015 8.9730360173906 9.13447381822542 9.16831424156569 9.13759672446714 9.02392147876175 0.113708202565949 0.106254806031148 0.112891609063366 0.111745731733118 0.110361736675183 0.119030813734115 0.109625359386640 0.110919014212784 0.119674041042692 0.107412060028051 0.113579783631608 0.108673231080562 0.106254806031148 0.110573842764089 0.110664470141823 0.108221625790600 0.120278574199660 0.113641931047352 0.108307393056364 1 1 + 26817105 26817550 26817350.818 26815874 26817792 + gene protein_coding_gene FALSE TRUE AT1G71090.1 auxin efflux carrier family protein similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT5G01990.1); similar to Os01g0818000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044627.1); similar to Os08g0191000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061169.1); similar to auxin efflux carrier family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73344.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.06086242458358 0.631841755462257 0.540537801318721 1 -0.411839424021372 18.2170733269160 0.06086242458358 0.0858996097268134
ATCG00550_at 11.7648704023263 11.9710228257154 11.7920743997263 11.8329077274628 11.7558413212941 11.4120736875865 12.0612433714160 12.0540414075003 12.5157182784592 12.5283472821852 13.0587201863736 12.9711723085289 12.5044467252582 12.6306375284296 12.5258730170121 12.9029548963417 12.1029031971390 12.6700869104032 12.5211802332161 0.0815327192035522 0.0801275992659274 0.0801275992659274 0.081189271414087 0.0812626602756777 0.0938494782759864 0.0802268113380922 0.0847724005826375 0.0937871637849195 0.0815215927067397 0.0813092834563477 0.0801275992659274 0.0801275992659274 0.087209627953397 0.08278594650663 0.0801275992659274 0.0889150451763185 0.0858491407572566 0.0819299315771678 C C - 63538 63636 63588.909 63538 63660 - gene protein_coding_gene FALSE TRUE ATCG00550.1 PSII component Identical to Photosystem II reaction center protein J (PSII-J) (psbJ) [Arabidopsis Thaliana] (GB:P56781;GB:Q42427); similar to photosystem II protein J [Nicotiana tabacum] (GB:NP_054514.1); contains InterPro domain Photosystem II protein PsbJ; (InterPro:IPR002682) -0.0577347347448827 -0.631672829167471 0.540644150750929 1 -0.411943411302193 24.4268083649481 -0.0577347347448827 0.0697378596216923
AT4G12910_at 7.8548648437734 7.91951560167941 7.69467131436685 7.52507947659528 8.0148083435273 7.6726400809458 8.61011399967235 8.2163540676623 6.26012133530092 6.93464934439021 7.15989263650113 7.20085015235036 7.04590439822652 7.37382811622203 6.07777522024623 6.81141430773273 7.33572162617763 6.7163037864146 6.05306082551425 0.24182224973528 0.235359577964276 0.247545143178365 0.248795748687265 0.240711420137799 0.238522750451095 0.245529923385323 0.243928741401684 0.254702871674633 0.247578552326045 0.239836875788928 0.241143407283268 0.240860539938284 0.243616075372539 0.250616351237834 0.238838668732319 0.253516964900265 0.241376969361663 0.240219006623363 4 4|0 -|/ 7550617 7551575 7551181.125 7550434 7553329 - gene protein_coding_gene FALSE TRUE AT4G12910.1 SCPL20 (serine carboxypeptidase-like 20); serine carboxypeptidase similar to SCPL21 (serine carboxypeptidase-like 21), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G25420.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentum] (GB:AAF44708.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE89792.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0629275605386959 0.631660951906993 0.540651628662469 1 -0.411950721713684 14.6290835238040 0.0629275605386959 0.0955830767711935
AT1G68150_at 1.20707642222022 1.21388368564775 1.19053902936759 1.19823132033572 0.665842866459636 1.00650131430509 0.8596495609089 0.925534339723467 0.986421551435374 1.58245269148618 0.982171031562668 1.01988103209340 1.32700736876572 1.07660069209767 0.850401876825444 1.03769165153815 1.64064625579267 1.33628111761508 1.13554344829772 0.195997982077543 0.195788325667104 0.197369323621437 0.204651735748411 0.198722057738407 0.197105789244168 0.203875780840353 0.196216756283817 0.196886810543221 0.20233240079369 0.19583588583969 0.199678780210361 0.205338137693599 0.199492268941840 0.197741279177895 0.197907664705136 0.207169684442591 0.198597184900730 0.199764058841857 1 1 + 25548360 25549203 25548826.273 25547632 25549380 + gene protein_coding_gene FALSE TRUE AT1G68150.1 WRKY9 (WRKY DNA-binding protein 9); transcription factor member of WRKY Transcription Factor; Group II-b Identical to Probable WRKY transcription factor 9 (WRKY DNA-binding protein 9) (WRKY9) [Arabidopsis Thaliana] (GB:Q9C9F0); similar to WRKY72 (WRKY DNA-binding protein 72), transcription factor [Arabidopsis thaliana] (TAIR:AT5G15130.1); similar to Os02g0770500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048250.1); similar to TPA: TPA_inf: WRKY transcription factor 32 [Oryza sativa (japonica cultivar-group)] (GB:DAA05097.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.0561140691474083 -0.631627148427888 0.540672911623151 1 -0.411971526939477 2.23022783005077 -0.0561140691474083 0.060071282785531
AT3G23310_at 7.63408972468193 7.4486425375991 6.92189729990576 7.1387485743244 8.10978072411294 7.82391047742068 8.10478985466893 7.83635715775908 7.8686971711867 7.97974944341988 8.44247998749153 8.05129410459587 8.18153365178876 7.9098423698196 8.0969602676625 8.24623510348773 8.0823964570935 7.79331119350566 8.04345757854526 0.161133074838761 0.149559686411107 0.155742538680586 0.155536391358574 0.150723352308463 0.155512851502316 0.153376225101075 0.150972300665361 0.150318660345330 0.164149563808643 0.159415824945445 0.153391958120769 0.159473451252468 0.154734155525784 0.150633989358722 0.145782701975409 0.151779759358427 0.153591107954912 0.159971245299325 3 3 + 8342266 8343310 8342872.636 8338907 8343639 + gene protein_coding_gene FALSE TRUE AT3G23310.1 protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT2G20470.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G03920.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE90852.1); similar to protein kinase MK6 [Mesembryanthemum crystallinum] (GB:CAB82852.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95893.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0604234860948087 -0.631492163281541 0.540757904201932 1 -0.412054596783657 15.6595143969664 -0.0604234860948087 0.0839258107859333
AT4G18080_at 1.4596300363775 1.78596103128842 1.60019639981031 1.90904041078113 1.54938116965361 1.60214821120629 1.45675152850002 1.53373658857528 1.67006852295793 1.81654864899756 1.19443686915044 1.15838738484510 1.52635041589795 1.48488897780648 1.43179708037455 1.19923389396774 1.48847383506615 1.67017271700463 1.37161910357109 0.207063888359799 0.202803485709580 0.207215674898998 0.204178128322699 0.210907996607171 0.208660983754687 0.206146455095029 0.207279743679528 0.210555144021435 0.218103287988627 0.207661451655989 0.204798131196260 0.203919970559644 0.202803485709580 0.202803485709580 0.204195353235074 0.205331579936329 0.204117493323787 0.202805727288402 4 4 - 10033243 10033793 10033544.818 10033222 10033947 - gene protein_coding_gene FALSE TRUE AT4G18080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27900.1) -0.0595113467002652 -0.631369756743421 0.540834983334215 1 -0.41212991157013 3.11892054132723 -0.0595113467002652 0.07941448193364
AT1G69380_at 3.44801098177655 3.75364426258824 3.62392163735600 3.35870295030782 3.70699914378086 3.06080046458173 3.50598057347674 3.73916277555264 2.95771047003328 3.09746180806721 2.82541607708012 3.19763544900854 3.27772706576153 3.51571082157916 2.93712311583553 3.04819975580553 2.58993167850446 3.11575748346163 3.05405736811823 0.191625911302939 0.187325072607690 0.191780809232702 0.193391879938151 0.191336746177015 0.200404788328551 0.192967334423072 0.188041094808561 0.201217084771067 0.188712799651566 0.190874978921183 0.194576269641262 0.190963143523792 0.190512248302738 0.187325072607690 0.189711426716804 0.191740164158659 0.191369114580662 0.191583508821494 1 1|0 -|/ 26085394 26086141 26085813.333 26085229 26087269 - gene protein_coding_gene FALSE TRUE AT1G69380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13610.1); similar to Os07g0694800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060742.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53488.1); similar to Os01g0764300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044340.1); contains InterPro domain Protein of unknown function DUF155; (InterPro:IPR003734) -0.0735329002676395 -0.631361951978463 0.540839898190633 1 -0.412134713259746 6.5745766301538 -0.0735329002676395 0.137977789734283
AT2G26790_at 1.42181434514922 1.26194099737889 1.48699171934427 1.18243318361124 1.20806040526445 1.36566678159231 1.59577241244601 1.53670690818976 1.42827481186128 0.9568322324834 1.02750043893630 1.16172924222605 1.44258508276428 1.02588658391497 1.20286921693548 1.49056091299534 1.28296684203300 1.32991331596443 1.26406869998329 0.184470001321981 0.187187417674608 0.192504240162239 0.187153362305275 0.193221520810204 0.184470001321981 0.185999999634758 0.184470001321981 0.188915016057884 0.184470001321981 0.188340255560619 0.186881910210223 0.184470001321981 0.185611604649054 0.190136751134026 0.184470001321981 0.195594546663841 0.187586121545868 0.192852362345442 2 2 - 11432434 11432903 11432665.364 11432348 11434747 - gene protein_coding_gene FALSE TRUE AT2G26790.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G13800.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE81698.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0570805518213312 -0.63109947944335 0.541005198588156 1 -0.41229616109059 2.61337002874563 -0.0570805518213312 0.0662697448107228
AT3G12120_at 11.5595394692528 11.7509347297744 11.5294254470287 11.5554492764759 11.9770045147669 11.7710067220172 11.770128667933 12.0596469803004 11.7296524917509 11.8767199007553 12.2759120585933 12.1088165268065 12.3070044425636 12.1227290287197 11.9544697968469 11.8162103187536 11.8553657162937 12.3307111608868 12.1060159370268 0.085779017019038 0.0762364814962115 0.0786184449192862 0.0816462729559296 0.0771118699133623 0.0776374087289436 0.0791875023332057 0.076211017154617 0.0818423685500819 0.0762078888639567 0.0763346222738032 0.0764062882230719 0.0762078888639567 0.0844932521388918 0.0785604737020634 0.0762078888639567 0.0849319609298496 0.0789800253899445 0.0762485144155635 3 3 - 3860793 3861152 3860964.727 3860291 3863056 - gene protein_coding_gene FALSE TRUE AT3G12120.1|AT3G12120.2 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase|FAD2 (FATTY ACID DESATURASE 2) Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5. Identical to Omega-6 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) (Delta(12) desaturase) (FAD2) [Arabidopsis Thaliana] (GB:P46313); similar to FAD3 (FATTY ACID DESATURASE 3), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT2G29980.1); similar to delta-12 desaturase [Brassica carinata] (GB:AAD19742.1); similar to fatty acid desaturase 2 [Brassica rapa] (GB:CAD30827.1); similar to Omega-6 fatty acid desaturase, endoplasmic reticulum (Delta(12) desaturase) (GB:Q39287); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261) 0.0577159831311871 0.630980955847818 0.541079852032665 1 -0.412369045062777 23.746907888124 0.0577159831311871 0.069988862330562
AT1G07060_at 1.31940071489332 1.36887898512816 1.50299995285534 1.26720887904690 1.32995135196615 1.45341857125393 1.29160402786230 1.33756318625348 1.32495587106606 1.58129673067458 1.37408652897497 1.45353290122751 1.45145582993528 1.24239852234489 1.48219507870953 1.16945698591234 1.05878152933570 1.30162127079010 1.54637744224882 0.217177333190984 0.221102742086838 0.218605296582890 0.223116703211605 0.218044068642889 0.216866017612214 0.216607335242302 0.21579719847232 0.221630892684306 0.225138638940492 0.215087900721880 0.216855494742504 0.215836439952293 0.223364966821460 0.213754073943754 0.219478373478978 0.213754073943754 0.217234995075162 0.218042628693137 1 1 - 2167176 2168127 2167655.273 2167106 2168396 - gene protein_coding_gene FALSE TRUE AT1G07060.1 similar to hypothetical protein LOC_Os12g01540 [Oryza sativa (japonica cultivar-group)] (GB:ABA95616.1); similar to Os12g0106100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065937.1) -0.0542429867565509 -0.630723699609392 0.541241908056932 1 -0.412527196671717 2.75932875644092 -0.0542429867565509 0.047519792318522
AT2G15490_at 1.65881649832137 1.76577651331712 1.75737320472668 1.65875456458178 1.69033483420928 1.96953286175801 1.78127083474994 1.33933723882302 2.11413417414786 1.46516164847855 1.92639208048297 1.46153608957926 1.81868244131187 1.90482666925194 1.93180169045544 1.65448416373892 2.0412955239393 1.93407192032613 1.94658093243795 0.173997008037659 0.177603206627900 0.179513391884787 0.187399649737779 0.173997008037659 0.177616218810165 0.175083325059537 0.175264487051054 0.178380572976508 0.181273605400215 0.173997008037659 0.177443610175712 0.17464545061342 0.182017920715102 0.183985595477273 0.185315682643195 0.17905580591218 0.174236881423835 0.175959102016273 2 2 + 6769700 6770369 6770010.364 6768717 6770582 + gene protein_coding_gene FALSE TRUE AT2G15490.1|AT2G15490.2 UGT73B4; UDP-glycosyltransferase/ transferase, transferring glycosyl groups|UGT73B4; UDP-glycosyltransferase similar to UGT73B2, UDP-glucosyltransferase/ UDP-glycosyltransferase/ flavonol 3-O-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT4G34135.1); similar to UGT73B3 (UDP-glucosyl transferase 73B3), UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G34131.1); similar to UGT73B5 (UDP-glucosyl transferase 73B5), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15480.1); similar to UDP-glucose glucosyltransferase [Rhodiola sachalinensis] (GB:AAS55083.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UGT73B5 (UDP-glucosyl transferase 73B5), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G15480.1); similar to immediate-early salicylate-induced glucosyltransferase (GB:AAB36653.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0624379995235073 0.630479979729217 0.541395462539286 1 -0.412676971647046 3.54069718918116 0.0624379995235073 0.093900762278104
AT3G32160_at 3.22866072964545 2.94602205664723 3.43582980111414 2.873545269476 2.53014782661423 3.23153964615092 2.63233993251162 3.08277742884381 3.57324526325716 2.87956227881177 2.70312154377648 3.04484948151155 3.18256018763349 3.17634386558725 3.23415142291241 3.12863746801265 3.44301974683084 2.70334989564107 3.4296294184976 0.215110194235620 0.210522887305793 0.209740622829495 0.21617305161488 0.214333214936768 0.210866457844781 0.216050022728331 0.217287365261162 0.214243063821770 0.210986905620509 0.212372742430561 0.209740622829495 0.211213550507223 0.221611688626946 0.217745423884961 0.215352469017719 0.231210202794121 0.218693401130204 0.209740622829495 3 0|3 /|+ 13149383 13149622 13149500.8 13149153 13149666 + gene protein_coding_gene FALSE TRUE AT3G32160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43150.1) -0.0859129265535807 -0.630353164009825 0.541475371976786 1 -0.412754883484741 6.18068276388062 -0.0859129265535807 0.180748363084740
AT2G31700_at 0.655658529313761 1.39451923276355 1.32458466986871 1.12418975902788 1.14782225067334 1.71337812179488 1.35031089707490 1.55947451745839 1.74417849642971 1.83267630832516 1.36426878338847 1.45602089785852 1.73362162170505 1.70019124329638 1.40313253771083 1.08350854705522 1.47163906186701 1.61170904687042 1.61309478729408 0.226525154452474 0.219645670371488 0.23158480904407 0.219645670371488 0.225300977558714 0.22187132861151 0.224202636948653 0.223521497273511 0.224253577051442 0.234589517820211 0.230362632173403 0.220120896493906 0.223180419392411 0.221854873482322 0.221915565627989 0.239487521982419 0.240189693096201 0.222754404978743 0.229186708061499 2 2|0 +|/ 13487606 13488621 13488215 13487587 13488645 + gene protein_coding_gene FALSE TRUE AT2G31700.1 unknown protein -0.0822344118460566 -0.63031631852308 0.541498590408489 1 -0.41277751754928 2.88773957965625 -0.0822344118460566 0.168644067157107
AT1G48070_at 0.892271781563898 0.794815521036056 1.36350413200425 1.05505651416128 0.721473647330761 0.935750111514578 1.06037776483606 0.877790711532807 1.18383475110157 0.855623008399374 1.0810423011395 0.978904957352218 0.807702400931748 1.20654133252686 0.696288859112443 0.855700609250195 0.79791037135963 0.904057745237074 1.39690045108530 0.215620345882214 0.210800004447217 0.213155295281094 0.209934631489855 0.210207929904486 0.214208220155009 0.212475116837809 0.215020005384704 0.21339171561387 0.212102500316834 0.212229919117701 0.212155616883116 0.219556887526459 0.213929596440926 0.217612870320643 0.209934631489855 0.209934631489855 0.212888131125327 0.215179867839274 1 1 - 17734304 17734735 17734511.4 17734160 17734791 - gene protein_coding_gene FALSE TRUE AT1G48070.1 contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0584010041189318 -0.630100006061311 0.541634912619866 1 -0.412910372938165 1.99336567748536 -0.0584010041189318 0.0742100068406445
AT1G13630_at 0.375644564836966 0.373541082280542 0.35766225008101 0.633993869848606 0.675512062535314 0.826138384367128 1.21118099435294 1.29047844446079 0.894782040373808 0.766544043124346 1.20362769014528 0.8850592181749 0.557589279913346 0.584856619700219 1.16371798118077 0.920035320908019 0.64341937601248 1.03371537053401 0.0602395094989582 0.176884777162251 0.177868393331216 0.179210732604793 0.179714516008470 0.182256342588045 0.176076400918318 0.179579868185409 0.17573635337041 0.180503261498450 0.185673731555271 0.178947217134094 0.176814634429135 0.176681635603567 0.178767008493367 0.175660136728188 0.173679324745179 0.185190324144896 0.182495948170498 0.175493329049070 1 1 - 4670328 4670825 4670568.909 4670305 4672823 - gene protein_coding_gene FALSE TRUE AT1G13630.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G22470.1); similar to Os10g0479200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064867.1); similar to putative membrane-associated salt-inducible protein [Oryza sativa] (GB:AAG13570.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0553813898153138 0.630074990995945 0.54165067861951 1 -0.412925734041517 1.44194785896383 0.0553813898153138 0.0561668268457398
AT1G06580_at 2.34079173528813 2.23598569796562 2.81451816433405 2.93421453048505 2.72958765826384 2.47990116155995 2.59816810183307 2.51714939323608 2.43131401890388 2.76343399170675 2.2902040092043 2.20802837319605 2.79260742915934 2.21350853547844 2.09613285160894 2.49100359054348 2.55974505650831 2.78176010319236 2.71262455670054 0.191006823040434 0.191006823040434 0.193088903583293 0.192065085889161 0.191006823040434 0.191006823040434 0.194788863844088 0.194203379617035 0.194718401683986 0.191837359260004 0.201950654205915 0.191006823040434 0.200962304352913 0.193870623478262 0.191744883042107 0.191006823040434 0.199521603371999 0.194537638002492 0.192129459679908 1 1 - 2014441 2014962 2014711.636 2014002 2016053 - gene protein_coding_gene FALSE TRUE AT1G06580.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G64580.1); similar to fertility restorer homologue C [Raphanus sativus] (GB:CAD80164.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0549322672105039 0.6299769719619 0.541712458636238 1 -0.412985919558108 5.11374685506162 0.0549322672105039 0.0531192984205582
AT1G32980_at 1.87098270049506 1.46995236919579 1.43260789573200 1.66938628949704 1.5316438510833 1.54411067845639 1.53080915411526 1.62793630887408 2.35444312988352 1.45752615844969 1.73344940736283 1.43090104984690 1.84109782004836 1.90269529572309 1.52635452580276 1.95197470161467 1.87600689399665 1.71079963845708 1.54632234050935 0.194489170466345 0.193323037047354 0.192335342543789 0.192335342543789 0.203895926413685 0.193661131000272 0.196483025232383 0.192335342543789 0.198503483083176 0.202081996001292 0.195981548655857 0.196583620815634 0.207405339242185 0.194418867160079 0.194784283043456 0.195522742334621 0.201390888500308 0.202580210172653 0.199457927904702 1 1 - 11954262 11954792 11954533.636 11954258 11955342 - gene protein_coding_gene FALSE TRUE AT1G32980.1 subtilisin-like serine protease-related similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32970.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209) -0.0599601237427538 -0.629958915063266 0.541723840083542 1 -0.412997005886841 3.35105721904148 -0.0599601237427538 0.0823562836610889
AT2G21920_at 0.717655824594485 0.296447543207765 0.340528039224927 0.697780581345459 0.442704311832719 0.63879311259457 0.623897621135646 0.640489095736141 0.942050432708962 1.02477365159712 0.713268300531413 0.704358393486526 0.721924475838035 0.959415442530082 0.631294059504177 0.56777106416781 0.749208817207252 0.941295538455267 0.54423425045852 0.20055093685052 0.202685008432263 0.20222616229361 0.203299585698680 0.198367774540535 0.198367774540535 0.207590818625264 0.202329188625979 0.199915056782944 0.208462376814868 0.198493457857334 0.204008289579222 0.208836331700015 0.206741716930907 0.198367774540535 0.198367774540535 0.202310958405358 0.206710499743898 0.201194651010407 2 2|0 -|/ 9350597 9353150 9351373 9350490 9354239 - gene protein_coding_gene FALSE TRUE AT2G21920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50220.1); contains InterPro domain F-box associated type 3; (InterPro:IPR013187) -0.0640617216877777 -0.629670406961278 0.541905708179213 1 -0.413174100321516 1.34258024440227 -0.0640617216877777 0.101465520810190
AT1G68120_at 1.75959931726220 1.95807856561958 2.02576489631406 2.12739160851997 1.62952138737784 1.70541806822301 1.72870208003270 1.70261370646288 2.18639247851715 1.84603218169528 1.57765396443275 2.15792992745217 2.12379935404159 1.82684308767126 2.28735747087103 2.10607135949073 1.83115304513734 2.41271295181339 2.02307214740390 0.193514674642734 0.194093656993375 0.207805121146324 0.191407193191524 0.191504943754432 0.194105563489825 0.200581800783703 0.203238245869586 0.202301549503819 0.198355966365846 0.200051923324473 0.202609288644876 0.208908249015726 0.191407193191524 0.197415986026997 0.197683827349021 0.202652130851418 0.197898881504464 0.194022750906406 1 1 - 25529962 25530531 25530212.182 25529878 25531197 - gene protein_coding_gene FALSE TRUE AT1G68120.1 ATBPC3/BBR/BPC3/BPC3 (BASIC PENTACYSTEINE 3); DNA binding / transcription factor similar to ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1) [Arabidopsis thaliana] (TAIR:AT2G01930.2); similar to GAGA-binding transcriptional activator [Cardamine pratensis] (GB:ABG57060.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.0533583910030272 0.629517040181551 0.542002400828456 1 -0.413268210661062 3.85910574421948 0.0533583910030272 0.0410117318613593
AT1G07890_at 11.7984450924055 11.7999862242297 12.2263834380497 12.1557710960595 10.9324265132331 11.0715955479601 11.7580355745013 11.8786486077057 10.6968657346494 11.0844146929196 11.2532441119216 11.1481686086864 10.7265683999947 10.7110153844320 10.9592195914447 10.5222795343624 10.5269823952184 11.4545188969262 10.6360011714340 0.108261060293007 0.103389715423506 0.108245082132670 0.110795015846574 0.103389715423506 0.107475130328399 0.103389715423506 0.103389715423506 0.113411312030313 0.103652645174803 0.103983874185166 0.104093496788356 0.112483881000908 0.106312925406458 0.105427266545782 0.104182528665226 0.116436183366103 0.106705334641049 0.109125917492044 1 1|0 +|/ 2438303 2439303 2438889.1 2437327 2439662 + gene protein_coding_gene FALSE TRUE AT1G07890.1|AT1G07890.2|AT1G07890.3|AT1G07890.4|AT1G07890.5|AT1G07890.6|AT1G07890.7 APX1 (ASCORBATE PEROXIDASE 1, MATERNAL EFFECT EMBRYO ARREST 6); L-ascorbate peroxidase|APX1 (ASCORBATE PEROXIDASE 1, MATERNAL EFFECT EMBRYO ARREST 6) Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Identical to L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (AP) (AtAPx01) (APX1) [Arabidopsis Thaliana] (GB:Q05431;GB:Q0WLU2); similar to APX2 (ASCORBATE PEROXIDASE 2), L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT3G09640.2); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60795.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.052622821756295 -0.629215027464752 0.542192838546309 1 -0.413453472532833 22.5619165859552 -0.052622821756295 0.034133470493445
AT4G14380_at 2.69158731116959 2.52235913704755 2.74143024837332 2.58557754415745 2.18508744137837 2.55367591222113 2.40098859381418 3.08725975848420 2.64639636947768 2.73928807247075 2.74700380607886 2.76959555685558 2.86908841212192 2.62809330070081 2.27103470970948 2.62267518092587 2.90600497097073 3.31748083534243 2.87993778083046 0.213972389760843 0.21590660389685 0.215851648237377 0.217930658270365 0.221092830671332 0.221741931346653 0.216327345779843 0.211070669830734 0.211743867797594 0.214605764114578 0.219507384278764 0.210580319794242 0.221455023462296 0.211824249917145 0.215152523199341 0.208572249610216 0.215767525572501 0.219883634850014 0.211611915257294 4 4 + 8285898 8286366 8286136.182 8285767 8286768 + gene protein_coding_gene FALSE TRUE AT4G14380.1 unknown protein -0.0739706123005319 -0.629009857987901 0.542322232356662 1 -0.413579281545387 5.35678549542131 -0.0739706123005319 0.140564050172773
AT3G26590_at 6.34044057076351 6.32167971416825 7.15516829689131 6.50866951291558 6.11058147706054 5.40333972461284 6.42856754593773 5.81406022602113 4.11532330649016 5.13466065299591 4.54328382753161 4.82618407192258 5.16366994827769 5.22714670696595 4.00096731546236 5.04367390467653 5.46202218659109 4.00080516684092 4.76071040926662 0.230904073862675 0.231509343128804 0.233260832721479 0.223322324869770 0.227827495559956 0.224775950538369 0.239001986559211 0.228200232246546 0.229515736015392 0.231352934719537 0.229826105840532 0.226908991432679 0.232202709041223 0.227233762030054 0.241334299204839 0.223322324869770 0.231108936855274 0.238921757771565 0.228419564138846 3 3 - 9763378 9764019 9763778.455 9762937 9766552 - gene protein_coding_gene FALSE TRUE AT3G26590.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G38030.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G23300.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87151.1); similar to Os08g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062445.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.0907452117150523 0.628672045487937 0.542535318201792 1 -0.413786344018381 10.9871636821886 0.0907452117150523 0.197018215671659
AT1G17440_at 8.72904385999259 8.82407073771524 8.42716901121362 8.5765212596894 8.17942681605195 8.09376202318488 7.7566012469942 8.14352297782814 8.33723650840318 7.55511402061328 8.133075985673 8.14658983666406 7.98910557607248 8.45164810804252 7.66970920978424 8.39475114402379 7.81276647697305 7.95135845031602 7.83073660643425 0.196899784574831 0.201282373443000 0.203760892649333 0.199863080951069 0.202422173434951 0.220219542430859 0.207179257320264 0.201315295976804 0.205351581570472 0.210303284118186 0.210698923456004 0.202116423338193 0.197369200854979 0.212228484671173 0.212964753683587 0.202875593672979 0.210138152855649 0.210182617193019 0.206888264564852 1 1|0 -|/ 5984414 5985443 5984807.444 5983977 5987777 - gene protein_coding_gene FALSE TRUE AT1G17440.1|AT1G17440.2 transcription initiation factor IID (TFIID) subunit A family protein similar to TAFII58 (tata-associated factor II 58) [Arabidopsis thaliana] (TAIR:AT3G10070.1); similar to Histone-fold [Medicago truncatula] (GB:ABE92437.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0584199792645816 0.628497904466529 0.542645181748656 1 -0.413893043736802 16.3294253967140 0.0584199792645816 0.0751111237122935
AT1G11400_at 4.55100944977288 4.0133423056814 4.32568642594983 4.03667407807398 5.20485501287548 5.41777648247261 4.63441334282985 4.15041851800264 4.97289297623977 4.08236690768009 4.4451626839207 4.17938969687012 4.5052724193244 4.09010680197386 4.36028727258993 4.47230377694907 4.49242950806047 3.97556918380477 4.67475363735584 0.214512322102967 0.212394919827896 0.215026339122929 0.213173404962083 0.225512020860675 0.223594610083434 0.217039519868501 0.214052112489741 0.222906120087905 0.215108632088599 0.221098949010783 0.215372919440553 0.216415534021394 0.214110630971363 0.212394919827896 0.214871936006032 0.223855117587676 0.212394919827896 0.220339412741541 1 1 + 3838841 3839953 3839279.091 3837821 3840207 + gene protein_coding_gene FALSE TRUE AT1G11400.1|AT1G11400.2|AT1G11400.3 PYM (PARTNER OF Y14-MAGO) similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06846.1); contains domain gb def: T23J18.7 (Hypothetical protein At1g11400) (PTHR22959:SF2); contains domain FAMILY NOT NAMED (PTHR22959) 0.0736730449746913 0.628371484184671 0.542724946773332 1 -0.413970486870477 8.98764012280495 0.0736730449746913 0.139757111979456
AT3G04520_at 7.95944795740188 8.0902405619645 8.2580171961824 8.26220114869546 8.38142437372376 8.1125644158733 8.8617925601805 8.63803660872123 7.65290412585011 7.76795974247676 7.65794272784468 7.68869876496695 7.86211843843046 8.17444943414702 7.77925275520898 8.23911222473002 8.31967516505781 7.78552221097019 7.65343929838559 0.149980058149452 0.152869086154833 0.157958786969844 0.154150229287782 0.154192337471774 0.161689632965872 0.150131314088755 0.153023007497976 0.157360997670138 0.151014674059982 0.153618590905320 0.153155104633483 0.159361482158028 0.149859995508659 0.157043297407261 0.150888012503501 0.155129922334445 0.153642106009879 0.161097211848671 3 0|3 /|- 1217527 1218488 1217932.375 1217245 1219765 - gene protein_coding_gene FALSE TRUE AT3G04520.1 THA2 (THREONINE ALDOLASE 2); threonine aldolase Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant. similar to THA1 (THREONINE ALDOLASE 1), aldehyde-lyase [Arabidopsis thaliana] (TAIR:AT1G08630.4); similar to L-allo-threonine aldolase-related protein [Solanum tuberosum] (GB:ABB72802.1); contains InterPro domain Aromatic amino acid beta-eliminating lyase/threonine aldolase; (InterPro:IPR001597) 0.0565422189085301 0.628184440067153 0.542842974724991 1 -0.414085040814183 16.1353560298797 0.0565422189085301 0.0646299775762909
AT2G32830_at 1.52220396902923 1.40890876203822 2.03634384017298 2.20983711505099 1.60493960427414 1.48926133734517 2.01169329370990 1.89043203295425 2.14751260930195 1.36204509389887 1.57213921879055 1.58267822709848 1.87861187510512 1.40986897589118 1.28457529627579 1.71053415737081 2.32568648987397 1.61679932363264 1.56562851776095 0.207576004300683 0.216103039226620 0.215984233067140 0.206886940822951 0.213820280951464 0.206919067330425 0.209614229694591 0.208760452004726 0.211431487449285 0.215430461316729 0.208643307331994 0.206886940822951 0.206886940822951 0.211174624717291 0.216624286709944 0.209687045987995 0.214876559004870 0.214605732153367 0.214156435089405 2 2 - 13934984 13935398 13935187.182 13934776 13936790 - gene protein_coding_gene FALSE TRUE AT2G32830.1 PHT5 (phosphate transporter 5); inorganic phosphate transporter/ phosphate transporter phosphate transporter Identical to Inorganic phosphate transporter 1-5 (AtPht1;5) (H(+)/Pi cotransporter) (PHT1-5) [Arabidopsis Thaliana] (GB:Q8GYF4;GB:O50040;GB:Q8S9I0); similar to ATPT1 (PHOSPHATE TRANSPORTER 1), carbohydrate transporter/ phosphate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43350.1); similar to ATPT2 (PHOSPHATE TRANSPORTER 2), carbohydrate transporter/ phosphate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G38940.1); similar to PHT3 (phosphate transporter 3), carbohydrate transporter/ phosphate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43360.1); similar to inorganic phosphate transporter [Lycopersicon esculentum] (GB:AAB82146.1); similar to phosphate transporter [Catharanthus roseus] (GB:BAA20522.1); similar to inorganic phosphate transporter [Nicotiana tabacum] (GB:AAF74025.1); contains InterPro domain Phosphate permease; (InterPro:IPR004738); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.0538344574810735 0.628024203983281 0.542944097983176 1 -0.414183151271534 3.45387271223456 0.0538344574810735 0.0461188163278155
AT2G20710_at 2.06684660270803 2.07805258472164 2.12370829884984 1.97520614870849 1.63769340597660 2.16884701076873 1.80561566501971 2.09810949197234 1.97769410773726 2.35094394155955 2.50669093920783 2.47464032433688 2.26170883391196 1.750283281231 2.43474381083234 1.95580427956118 2.54225031057121 2.22824558192141 1.97923716227058 0.194994144982116 0.196037769053092 0.194693533766858 0.195302783073234 0.201100509959877 0.1935364129298 0.204188847355627 0.205010696918782 0.199251363527331 0.197333880556356 0.195277075320311 0.1935364129298 0.196531855215504 0.198205842569404 0.1935364129298 0.194031563916248 0.196816790074475 0.196285444432981 0.19367011871923 2 2 + 8934222 8934716 8934464.182 8933087 8934925 + gene protein_coding_gene FALSE TRUE AT2G20710.1|AT2G20710.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G28020.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); similar to Os10g0501200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064984.1); similar to Os10g0501300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064985.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G28020.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); similar to Os10g0501200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064984.1); similar to Os10g0501300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064985.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0654392398223752 0.628003606356702 0.542957097700214 1 -0.414195761249811 4.18022039645027 0.0654392398223752 0.108052545728672
AT4G31020_at 0.976460781797615 0.99529536955729 1.15048248230409 1.05955334925845 1.10878446997565 1.09979655651449 1.03646428416461 1.36796687947806 0.574381254879782 1.53600216954272 1.22569675408411 1.37011791082251 1.36929097628894 1.14164629248005 1.14991146404952 1.23574457295918 1.57930773094237 1.31560782512165 1.48261871682124 0.199880146522396 0.201800658889424 0.199880146522396 0.203643304708205 0.201145339860025 0.206588215476695 0.201612310877342 0.204338156934564 0.203484621333156 0.202242193097779 0.199880146522396 0.201546084437145 0.212791183515783 0.204968234295312 0.199880146522396 0.202158823027697 0.201145783188024 0.199880146522396 0.205325961273778 4 4|0 -|/ 15108874 15109508 15109212.6 15108107 15110295 - gene protein_coding_gene FALSE TRUE AT4G31020.1|AT4G31020.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24320.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); similar to Os02g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048390.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.0556777230963697 0.627546342811106 0.543245734666197 1 -0.414475601961656 2.34739193226034 0.0556777230963697 0.0595965696006427
AT3G22450_at 1.33445093889057 1.59171835660780 1.34105420559984 1.55276205566525 1.32378070861086 1.47406761769966 1.26316818415025 1.01049999610327 1.36667540578221 1.07858448984732 1.30130607102329 1.16585084975047 1.47332554433825 1.14894157668919 1.13104115279141 1.04364026059154 1.31841362509677 1.30739565938479 1.28036335927217 0.190973000736937 0.184112458115524 0.189804697616234 0.180542525608414 0.185701132896757 0.180167668658217 0.181966675660157 0.181523249532150 0.18553485212679 0.184968659466771 0.187531879909790 0.180167668658217 0.185584563610118 0.180167668658217 0.187116321008173 0.182862747788614 0.18043931379388 0.191456465757785 0.183346347125127 3 3 + 7962825 7963286 7963098.364 7962450 7963385 + gene protein_coding_gene FALSE TRUE AT3G22450.1 structural constituent of ribosome similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G08845.1); similar to Ribosomal protein L18P/L5E [Medicago truncatula] (GB:ABE91732.1); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484) 0.058660851056787 0.627481328645936 0.543286780432831 1 -0.414515374672051 2.60049463829533 0.058660851056787 0.0768943441509784
AT2G41610_at 1.12184149802501 1.71673783611188 1.72290054284756 1.72730127560833 1.11855422485926 1.13601707531956 0.998243113335276 1.19973663334984 0.697468578544202 1.18068498924389 0.561411610576836 1.14628461608259 0.982103627973521 1.28921300449260 1.19732062414943 1.15410990266944 1.63002659668676 0.812283998251189 1.51972918642604 0.221181653400118 0.231753195283861 0.227756693225727 0.231755114664516 0.230002074391244 0.236685711188843 0.230388274592353 0.237771753940442 0.23834355691828 0.228405561064197 0.229577662279838 0.221181653400118 0.233216283564432 0.231817321878207 0.228342614044307 0.232649397634077 0.222467424520976 0.231262513550224 0.229052404480929 2 2 + 17354615 17355047 17354793.182 17354235 17355317 + gene protein_coding_gene FALSE TRUE AT2G41610.1 similar to Os10g0200700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064300.1); similar to Os03g0253600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049581.1) 0.0655100861627144 0.627105335646335 0.543524192862592 1 -0.414745315333579 2.45727744110626 0.0655100861627144 0.108739157824333
AT1G53270_at 1.60024683833735 1.33704417401571 1.29732474773518 1.36940447245894 1.49220982954835 1.4690904075753 1.42256027037604 1.55403068612559 1.87808631733980 1.79465829030156 1.60315808621944 2.04483955040135 1.79547053551514 1.93483337508153 1.97959785476982 1.59935656678608 1.68812180349434 1.79216073926198 1.85455555902458 0.245124381586149 0.247885684646394 0.244939219522678 0.241726399025134 0.239733344910810 0.242171365595453 0.238709083139095 0.248422478635724 0.238735308635601 0.241204751182178 0.241800536576481 0.237840581891233 0.237393989973874 0.234996672069475 0.240070190599632 0.238157950723713 0.253865817444015 0.242841568793655 0.237505945759673 1 1 + 19867746 19868251 19868004 19866546 19868318 + gene protein_coding_gene FALSE TRUE AT1G53270.1 ABC transporter family protein Identical to Probable white-brown complex homolog protein 10 (WBC10) [Arabidopsis Thaliana] (GB:Q9MAH4); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT2G13610.1); similar to Os01g0615500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043574.1); similar to ABC transporter-like [Oryza sativa (japonica cultivar-group)] (GB:BAB17113.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0546021014158302 -0.627066783311958 0.543548539213139 1 -0.414768885027281 3.26630177968648 -0.0546021014158302 0.0525727727721068
AT2G04038_at 0.584544866130496 1.01576201008055 0.784436865300628 1.18338103708948 0.838156382152019 0.718003650758539 0.630574096267781 1.03256914275306 1.27990873187939 0.492225321856809 1.08587726097923 0.843230810169564 0.9957811065604 0.843520386675298 1.03789380466525 0.745938497141189 0.583828182562615 1.33189884139763 0.806423708023478 0.184571252266096 0.183812152997459 0.188691683069729 0.189249178473716 0.187658761902057 0.186956354082629 0.184908751928728 0.182098590469395 0.191405346290843 0.182652756499707 0.188713938102935 0.186308309851882 0.182520614066341 0.18675271658554 0.185357283395426 0.181758732060550 0.198856760726903 0.186411096536082 0.188135252403461 2 2 + 1331948 1332336 1332128.818 1331916 1332416 + gene protein_coding_gene FALSE TRUE AT2G04038.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G13600.1); similar to bZIP transcription factor bZIP35 [Glycine max] (GB:ABI34640.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.069554406183099 0.627064183666469 0.54355018094877 1 -0.414770474321136 1.74493618891096 0.069554406183099 0.124928373202977
AT3G11240_at 2.87492145411433 2.59070705024455 2.33623786653840 2.52058188357533 3.02208538553375 2.73325163816445 2.18761863693716 2.22357495397163 2.81713581390950 2.78676320321719 2.82944041843145 2.73219348933308 2.28346137799860 2.65223648057452 2.30250296654581 2.37412034606579 2.18773303830363 2.25668957893153 2.65662428609138 0.206686776427689 0.208949364168092 0.207388024424502 0.208629816310088 0.203891023445509 0.202510458755862 0.204467064502246 0.206697790075994 0.204512317664203 0.204071378289052 0.20322998280151 0.201373402338212 0.204353621985722 0.201263132999971 0.203484940476677 0.202983667009285 0.208123447209783 0.210993527381812 0.20682502587812 3 3|0 -|/ 3518697 3519418 3519100.1 3518490 3521121 - gene protein_coding_gene FALSE TRUE AT3G11240.1 arginine-tRNA-protein transferase, putative / arginyltransferase, putative / arginyl-tRNA-protein transferase, putative similar to ATE1 (DELAYED LEAF SENESCENCE 1), arginyltransferase [Arabidopsis thaliana] (TAIR:AT5G05700.1); similar to Os05g0446800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055690.1); similar to ar (GB:CAI12919.1); similar to ar (GB:AAD12366.1); contains InterPro domain Arginine-tRNA-protein transferase, N-terminal; (InterPro:IPR007471); contains InterPro domain Arginine-tRNA-protein transferase, C-terminal; (InterPro:IPR007472) -0.0586884430401202 -0.626969750972692 0.54360981926828 1 -0.41482820163792 5.16402484851615 -0.0586884430401202 0.0772914001268782
AT3G25640_at 1.84183063067768 1.56526999379477 1.49003477206299 1.23391009437399 1.63047954289483 1.65990337060462 1.94432717686279 1.49896207251315 1.4745613079783 2.11337413134769 1.82872850614312 1.6037288539701 2.14983646764910 1.42655966241925 1.68540020974727 1.69605626222969 1.91409557457104 2.26440961534292 1.63050465253742 0.211954593455215 0.200960742174688 0.205188306162536 0.214116809608662 0.210560130994928 0.209355261500613 0.207036162983258 0.206725202254638 0.213568120739068 0.200960742174688 0.209730486263490 0.20295853138322 0.213184176107191 0.215071087162647 0.208063775843983 0.201195725010326 0.202342505203662 0.210420930751628 0.214047906425869 3 3 + 9335252 9335718 9335430.636 9334956 9336041 + gene protein_coding_gene FALSE TRUE AT3G25640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23100.1); similar to Os05g0577100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056405.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90468.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460) -0.063696830045032 -0.626908002850274 0.543648817883262 1 -0.414865944315963 3.3883806690382 -0.063696830045032 0.101100287376777
AT1G66150_at 10.2564262460702 10.5347951073005 10.262518546462 10.3522501316653 10.9172218947921 10.7678997670491 10.7870946367297 10.9396862024641 11.4021718361969 10.9962245944075 11.5459458065467 11.0764471819697 11.3213150373880 11.3994945789441 11.0444792829602 11.0981163159507 10.5869717361874 11.1200139067540 11.2219445190976 0.0676486963927466 0.0660025621127053 0.0685622536371289 0.0692320796962224 0.0660025621127053 0.0715867925355009 0.0701601107104636 0.066563289955471 0.0715337552320461 0.0660025621127053 0.0669810976200204 0.0670421576227284 0.0693742017915422 0.0701026990704373 0.0677525089405567 0.0667115918680859 0.0752507865769893 0.0700665057358617 0.0660025621127053 1 1 + 24637436 24638040 24637821.545 24635072 24638412 + gene protein_coding_gene FALSE TRUE AT1G66150.1 TMK1 (TRANSMEMBRANE KINASE 1) receptor-like transmembrane kinase I (TMK1) Identical to Putative receptor protein kinase TMK1 precursor (EC 2.7.11.1) (TMK1) [Arabidopsis Thaliana] (GB:P43298); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G23750.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G24650.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01820.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to LRR receptor-like protein kinase [Nicotiana tabacum] (GB:AAF66615.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE85728.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0561051494393887 -0.626897198159972 0.543655642026889 1 -0.414872548178614 21.7801757152691 -0.0561051494393887 0.0626644926333533
AT3G55640_at 5.7996336823874 5.71723165929601 5.39162249039217 5.88313793257708 6.22558249417186 4.88789099896388 6.19335247010136 5.76070156273025 4.26554256833415 4.47271246030407 4.33648500053909 4.41936769781966 4.72934011688383 4.96343322358534 3.76818022819547 4.80570045890323 4.65981710067376 4.41157830874738 4.64783378594823 0.216309328967743 0.221180955254171 0.235140292853822 0.221457256278634 0.221872341079533 0.222930484559739 0.220050466735494 0.215482026738369 0.235830393818354 0.217609594974234 0.21646413795373 0.217233292307886 0.215760046074859 0.222719397046457 0.221789521284311 0.221368327971706 0.225273514005440 0.217108193172430 0.219138671497682 3 3|0 +|/ 20651889 20653326 20652289 20650812 20653638 + gene protein_coding_gene FALSE TRUE AT3G55640.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT3G53940.1); similar to Os03g0267700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049667.1); similar to putative peroxisomal Ca-dependent solute carrier protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06887.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.110481601273093 -0.626874797150984 0.543669790454583 1 -0.414886239414384 10.2192778472178 -0.110481601273093 0.258134851376482
AT2G40910_at 1.72307762771420 1.45161419940048 2.16217906227003 1.6145175373263 1.50862366136375 1.50481458847635 1.84153178522414 1.83081882655587 2.01913479756462 1.67237585163920 1.81088525036966 1.62995262027642 1.44684264454869 1.51675548135245 1.26940693652906 1.54425986800957 1.47261120914082 1.80214581947600 1.33928242674729 0.200269541750724 0.202723104762441 0.209548272394329 0.202827364857844 0.206367364374511 0.202476219505723 0.208344940448204 0.202440154058689 0.202396202189346 0.199075247504419 0.20502256795001 0.197589884109643 0.207011302257620 0.207704557785870 0.211456345484652 0.207012215865162 0.198821519589141 0.201806196831816 0.206621936086653 2 2 - 17077022 17077571 17077362.818 17076946 17078735 - gene protein_coding_gene FALSE TRUE AT2G40910.1|AT2G40910.2 F-box protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G40920.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE83875.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527)|similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G40920.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE83875.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0647752219843848 -0.62676806552174 0.54373720479071 1 -0.414951466327638 3.32391641305633 -0.0647752219843848 0.105797816912376
AT1G06980_at 3.47226970341306 2.95231756666149 2.60598835098450 2.61798869197471 2.55088236096689 3.13583115692702 2.76114432823998 3.46921018795349 3.03358641184845 2.83291031692160 3.05146506404285 3.52241130302788 3.6273155210255 3.02812013896576 2.94832914042240 3.02057926244669 3.43047693046995 2.98118011003307 2.94502950376272 0.209548386909874 0.208239377694125 0.207232546137759 0.207559088120174 0.203436049307844 0.205155345194525 0.205408332640392 0.204739733457238 0.221026271945085 0.213084830425846 0.203743623979891 0.207075430771546 0.208029248417955 0.204560081505767 0.200589863291975 0.202918299231562 0.204368398555425 0.203210526140161 0.21311385885678 1 1 - 2143259 2143722 2143497.636 2143030 2143820 - gene protein_coding_gene FALSE TRUE AT1G06980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30230.1); similar to hypothetical protein LOC_Os03g18660 [Oryza sativa (japonica cultivar-group)] (GB:ABF95458.1) -0.0860017666968582 -0.626725161950376 0.543764305086505 1 -0.414977683097141 6.0149090907144 -0.0860017666968582 0.182653978744502
AT3G25080_at 1.30126343491128 1.29926047053292 1.96668189426418 1.460343939077 1.2467101336663 1.81587137100309 1.60760552741187 1.61783430890238 1.50595001879534 1.44659419212357 1.39676627541271 1.34126304728118 1.45824220386901 1.14598797839066 1.69829835199178 0.8738470630791 2.20805353196561 1.49383625839071 1.47330032633961 0.206293179578991 0.19916158484829 0.199860706904897 0.203736981028046 0.199296873146794 0.19899561725196 0.203237192872448 0.200587766558423 0.201970473288504 0.209749889094726 0.19899561725196 0.19899561725196 0.205199387358127 0.204872916019164 0.201520751976002 0.19899561725196 0.206915410258971 0.200994630393346 0.19899561725196 3 3 + 9137060 9137852 9137551.545 9136638 9138059 + gene protein_coding_gene FALSE TRUE AT3G25080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24370.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) 0.0713331127205581 0.626690994169152 0.54378588791787 1 -0.414998560564089 3.00310556057968 0.0713331127205581 0.131843496494286
AT1G16090_at 3.57484351996119 3.57086436252925 4.04243179513723 3.68995574406104 3.60244893281855 3.11475404682839 3.18888676082779 3.10910075660093 2.66003482956403 3.10790495937513 2.77888320750044 2.75918462081874 2.40923510421358 2.97748311357027 2.73601017018954 2.62655595959492 2.59632821349267 2.73310038467173 2.70531908895327 0.215644338497633 0.221969647682902 0.202763856710703 0.206218241557296 0.204518545941743 0.214227459296469 0.204312588707818 0.204871285328439 0.202715185082479 0.203462781789463 0.198811970103891 0.204874669246485 0.198811970103891 0.201569955819208 0.204777136131566 0.199105635867162 0.211676865811957 0.204832147209232 0.209797449709182 1 1|0 +|/ 5516806 5517491 5517094 5516253 5517816 + gene protein_coding_gene FALSE TRUE AT1G16090.1 WAKL7 (WALL ASSOCIATED KINASE-LIKE 7) WAK-like kinase similar to RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1), kinase [Arabidopsis thaliana] (TAIR:AT1G79670.1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.0645758752619281 0.626548867687496 0.543875670465982 1 -0.415085392506926 6.24991935120586 0.0645758752619281 0.105046790771412
AT4G07740_at 1.16774247292613 1.35071084644152 1.35338944629643 1.27095047624227 1.1146968717835 1.35941451482324 1.1936957644934 1.34698920975819 1.20319654990335 1.44554904102784 1.56308483649448 1.70375185431566 1.51747710919603 0.995587461845463 1.06611691319307 1.17418667388667 2.01118168884384 1.46988646692919 1.35960647481840 0.260155021214821 0.247697869964921 0.267259500669317 0.26078767449688 0.250482349059204 0.253121839519606 0.247697869964921 0.253593033923954 0.267323173131631 0.250972756665939 0.254316082788314 0.253435840024440 0.252875590825625 0.250376448496977 0.264042074549590 0.251282827897237 0.265606003076809 0.253326270799347 0.255126861306150 4 4|0 +|/ 4539643 4540627 4540119.9 4539635 4540679 + gene protein_coding_gene FALSE TRUE AT4G07740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43150.1) 0.0556850121098671 0.625418740112468 0.544589881795512 1 -0.415775193569375 2.65658694076454 0.0556850121098671 0.0608550396918675
AT2G18080_at 2.00793873118223 1.87218947953914 2.53047797809757 2.52760605814459 1.78769871051253 2.19683974312864 2.49522668665235 2.65404952928670 2.55254461813890 2.53700789575683 2.26783861584193 2.13280395224541 2.45857983385719 2.62767535062752 2.08770659410309 2.39581658194068 2.71456452744274 2.30037948099351 2.39359647178305 0.185735338190328 0.189789683487974 0.182060329317614 0.187960242695114 0.184462143266321 0.18413584346175 0.188208645685715 0.186613501473213 0.194206077995377 0.185229417506428 0.189294520732233 0.184465675010151 0.185737475855079 0.185396672043945 0.181149772930934 0.187377988579769 0.184971445427581 0.182884748659649 0.193795424497004 2 2|0 +|/ 7865973 7866765 7866433.625 7864598 7866797 + gene protein_coding_gene FALSE TRUE AT2G18080.1 EDA2 (embryo sac development arrest 2); serine-type peptidase similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT4G36190.1); similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT4G36195.1); similar to Os10g0511400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065039.1); similar to putative serine peptidase [Oryza sativa (japonica cultivar-group)] (GB:AAG13566.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S28; (InterPro:IPR008758) -0.0589539311445135 -0.625274113430266 0.544681320536706 1 -0.415863386835435 4.69278017074685 -0.0589539311445135 0.079502975119953
AT1G23250_at 1.28414491330130 1.58106608910822 1.33372541835931 1.52532628062233 0.93423720568928 1.18605455070609 1.29558549766648 1.83988020444032 1.34040451909739 1.72613763967745 1.61878283810169 1.5986790183388 1.61927072404999 1.29051769063658 1.43579925473906 1.54945396747938 1.58190356289624 2.08396949792215 1.36855694582809 0.196445489064232 0.200425824520353 0.19893840044613 0.204796738579003 0.197898778138288 0.196445489064232 0.196445489064232 0.198495258391408 0.203845558352056 0.202324134125751 0.199399334971625 0.200220826561492 0.201833622720658 0.199988258988449 0.212328198208206 0.196565718749992 0.210376537788496 0.200100303255346 0.202789522937051 1 1|0 -|/ 8255296 8256234 8255877 8255222 8256258 - gene protein_coding_gene FALSE TRUE AT1G23250.1 caleosin-related similar to caleosin-related family protein [Arabidopsis thaliana] (TAIR:AT1G23240.1); similar to Os06g0254700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057304.1); similar to putative ABA-induced protein [Cynodon dactylon] (GB:AAS48644.1); contains InterPro domain Caleosin related; (InterPro:IPR007736) -0.06820130560766 -0.625187864377824 0.544735854767248 1 -0.415915972472086 2.91033423872240 -0.06820130560766 0.120461681845849
AT1G34550_at 6.08470501267004 6.11513965753205 5.81706808891485 5.72618460311919 6.19682626804887 5.8610317526497 7.00047691422446 6.51088600826657 6.23397384043008 6.4288380280248 7.41625615923625 7.03930905423148 6.45575138004332 6.82221772684914 6.73574968538421 6.50255935583157 5.95901403761242 6.45432747674514 6.1593036519833 0.203569449112079 0.207884517409959 0.216470442328686 0.206469604490804 0.205021983713359 0.209386308571686 0.213433103807938 0.203611852387149 0.208786615241690 0.209091141084917 0.211097576626016 0.206137396056775 0.198572604197008 0.229085639949341 0.202669094363066 0.200857694124833 0.206260469513209 0.215553622851133 0.203311019308128 1 1|0 -|/ 12646900 12648189 12647499.667 12646674 12652624 - gene protein_coding_gene FALSE TRUE AT1G34550.1 EMB2756 (EMBRYO DEFECTIVE 2756); hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09630.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91928.2); contains InterPro domain Alkaline phytoceramidase; (InterPro:IPR008901); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) -0.0642073086555799 -0.625187530279886 0.544736066019352 1 -0.415916176156955 12.6376330963304 -0.0642073086555799 0.104069510583689
AT2G40090_at 4.09056675484224 4.81692426016086 4.09550803120342 4.21118235077480 4.16134553221216 4.44158340035914 3.59662580352081 4.36551913855679 3.98362701749747 3.55896691911127 4.2028251963204 4.10425925807043 4.22455458259491 4.07743142560367 3.78055148548639 3.46795256590149 3.63723902705443 3.72616771766275 3.66648843698860 0.224834864610248 0.214748453251150 0.217353774092413 0.220465849498953 0.220597646406747 0.235032139149011 0.224248194775131 0.217102982544553 0.233866524814982 0.211300184640612 0.211300184640612 0.213471590607072 0.217420259501542 0.224418343539071 0.223996754736233 0.211300184640612 0.223184315629614 0.226089250861979 0.215271193348897 2 2 - 16744897 16745305 16745075.545 16744544 16747448 - gene protein_coding_gene FALSE TRUE AT2G40090.1 ATATH9 (ABC2 homolog 9) member of ATH subfamily Identical to Putative ABC1 protein At2g40090 precursor [Arabidopsis Thaliana] (GB:O04212;GB:Q8LET1); similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G65950.1); similar to putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:AAO38450.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) 0.0881288527524535 0.624808843773117 0.544975541638428 1 -0.416146979953766 8.04189863322174 0.0881288527524535 0.190415656684005
AT2G33490_at 5.16895972571393 5.42536199527697 5.1054569704812 5.54726543560447 4.60663407115791 4.62947668616579 4.43387928346479 4.04046795970592 4.41221579349587 4.01667480254213 3.96307986960687 3.66984554527231 4.21544292568597 4.32531961315403 3.89644620304095 3.9251239679869 4.1828189968336 4.14663739862004 3.91232187676391 0.245389949581388 0.236342165884715 0.240176535682917 0.235624365847417 0.239126219215025 0.241742904182922 0.240447968797171 0.243938854520558 0.238657232132093 0.230522618256026 0.234241995896191 0.233328241101017 0.235841882503500 0.241516609208900 0.233460687272275 0.230522618256026 0.245485658205064 0.231906422051041 0.241927410705585 2 2 + 14193958 14194427 14194141.364 14190628 14194945 + gene protein_coding_gene FALSE TRUE AT2G33490.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G26910.2); similar to Os09g0509300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063628.1); similar to Os04g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052655.1); similar to hydroxyproline-rich glycoprotein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38129.1) 0.0659464369515299 0.624574709491304 0.54512363450123 1 -0.416289616566183 8.9468511689259 0.0659464369515299 0.11164790302272
AT3G06560_at 1.87784175493713 1.69475472977341 1.95598569386598 1.95146124201221 1.95958529584893 2.31179534597412 2.17077311542402 1.96843002513206 2.07310373057494 2.05382647144257 2.13409028736984 1.84107931561225 2.15246921192194 2.25735544266389 2.37307879075692 1.85267856126534 2.05702140881369 2.12179509950956 2.16889045994622 0.1962114030463 0.196647457261547 0.195244701616688 0.202588666702725 0.202407167210526 0.195300727848377 0.199952125819472 0.192560500073763 0.207923765208458 0.191851501839509 0.196387869566095 0.198394926148382 0.199135317842048 0.196816027619909 0.192339828615804 0.199646588546215 0.199140958925704 0.209101065653534 0.194901605703729 3 3 + 2046394 2046965 2046711.455 2044358 2047215 + gene protein_coding_gene FALSE TRUE AT3G06560.1 polynucleotide adenylyltransferase similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68017.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010) 0.0584230577632983 0.624504455876175 0.545168075244902 1 -0.416332406019683 4.08497985140119 0.0584230577632983 0.0771086171320166
AT3G29630_at 1.48802212153925 1.62132459333393 1.57274162030507 1.60245760006073 1.38485071329405 1.23190671509822 1.41237620412929 1.42994508897062 1.71385502524831 1.50696148220304 1.462850307917 1.00369835620541 1.5646691696996 1.50516665816755 1.80394153409661 1.22745095730383 1.40877846702728 1.39212612092945 1.23683086766457 0.175880907794689 0.176352668371375 0.174773676760858 0.177943187198256 0.174871605616987 0.177804365839594 0.177332718702902 0.174854239637222 0.17564204213391 0.181951928109891 0.174773676760858 0.175920440641266 0.187654836279726 0.17936742719605 0.177552912959495 0.174773676760858 0.180397687400741 0.175250215073359 0.185689140208617 3 3 - 11449706 11450227 11449998.818 11449507 11451088 - gene protein_coding_gene FALSE TRUE AT3G29630.1 glycosyltransferase family protein similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G50580.1); similar to glucosyltransferase [Ipomoea nil] (GB:BAD95881.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.0523625508786939 -0.624410316765819 0.54522762859948 1 -0.416389736455386 2.92143690948655 -0.0523625508786939 0.0356144314911531
AT1G73970_at 5.31856713760931 5.48426870557603 5.43002659526808 5.6975155563137 6.21071759812145 5.50894678396903 5.71821719147951 5.29223134425876 4.71613591994504 5.32279586585788 4.80557626788146 4.96699743363804 5.13326835475603 5.11779366853409 4.8044802149734 5.47998944008218 4.84741852620397 5.38923914258936 5.48079497766862 0.227930110699583 0.213376100402658 0.235733826161333 0.220494797398594 0.205583491891643 0.232351886499984 0.222561026615038 0.212121249290961 0.229924695769614 0.211051583604175 0.212674790920802 0.213383826932652 0.208575039541186 0.222292411441513 0.210779169345021 0.209137431764178 0.218263825665424 0.206136635280399 0.209103647085888 1 1|0 +|/ 27822421 27823592 27823206.444 27820475 27823739 + gene protein_coding_gene FALSE TRUE AT1G73970.1 similar to Os02g0123400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045734.1); similar to hypothetical protein MtrDRAFT_AC139344g16v1 [Medicago truncatula] (GB:ABE80081.1); contains domain ARM repeat (SSF48371) 0.0766668326394832 0.624409785489411 0.545227964700788 1 -0.416390059978423 10.7032301818609 0.0766668326394832 0.152145815412634
AT3G07580_at 4.0037520776514 4.13178942553739 4.4293595423291 4.23378076250368 3.44937719988277 3.75258343862451 3.18563361290082 3.10977255313653 4.14118436291713 3.61540260974419 3.36625662729667 3.34726802457771 3.61169186696301 3.46179212211116 3.4118149235995 3.75007481552206 3.22380261630262 3.88096160510596 3.49901650709844 0.220384032279342 0.216754488381712 0.235976122288745 0.227033400434248 0.227319771662918 0.216061857508950 0.214206350789301 0.224028546466114 0.225859563018800 0.219797304128240 0.221069713567064 0.212722940905394 0.212496642285802 0.212931176127013 0.211546594294353 0.211546594294353 0.218971567852239 0.216782166718037 0.215500868676996 3 3|0 -|/ 2421200 2422642 2422008.111 2420975 2422667 - gene protein_coding_gene FALSE TRUE AT3G07580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48335.1) 0.0566891585633634 0.624386220310707 0.545242872854204 1 -0.416404409838289 7.41629390245649 0.0566891585633634 0.067543114499951
AT3G63350_at 2.03771375365234 1.38273172018608 1.92449804069458 1.23874856854581 1.90217006474141 1.69042093554148 1.87321107958384 1.58994865649432 2.02090342789304 1.91004868560216 1.96542339768854 2.02517061072092 1.95238704050176 2.3105484589121 2.20716779823087 2.04476457614512 2.33533203142084 2.347819378937 1.91864703268009 0.206852103326217 0.202558492742037 0.205654147083525 0.212130242331121 0.207543774437555 0.202558492742037 0.208369560176402 0.202558492742037 0.217519417106776 0.222678799206695 0.206655531939825 0.203797679036770 0.206021897221255 0.202558492742037 0.203035074960809 0.202558492742037 0.207467652171187 0.203089257199728 0.215333261457601 3 3 + 23411275 23411699 23411509.455 23410443 23411787 + gene protein_coding_gene FALSE TRUE AT3G63350.1 AT-HSFA7B (Arabidopsis thaliana heat shock transcription factor A7B); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-7b (AtHsfA7b) (HSFA7B) [Arabidopsis Thaliana] (GB:Q9M1V5); similar to AT-HSFA7A (Arabidopsis thaliana heat shock transcription factor A7A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G51910.1); similar to Os03g0795900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051552.1); similar to heat stress protein [Oryza sativa (japonica cultivar-group)] (GB:AAP92754.1); similar to Os10g0419300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064617.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0833841897064459 0.624236335506225 0.545337700618205 1 -0.416495669465012 3.75415187424402 0.0833841897064459 0.175147145078735
AT3G08490_at 1.23650803711211 1.24068378519377 1.21347102452985 0.9179644945433 1.09795861621196 1.23037381676949 1.29444241202330 1.28303144995389 1.24870100789606 1.23637991334062 1.49281040982747 1.40494847799011 0.902361277345953 1.25995914755742 1.65349214706375 1.48004530297926 1.67678917922998 1.60980561174907 1.70277745381931 0.203627081475745 0.20309751197753 0.215049646131306 0.221482200057042 0.20309751197753 0.207877319227725 0.204440169466555 0.221484306426902 0.214398081787291 0.214517219824457 0.20309751197753 0.203444431554505 0.214048010253814 0.215287250836486 0.208645744158613 0.205422000315994 0.204682676157213 0.20943500013302 0.20309751197753 3 3 - 2574168 2574880 2574583.909 2573950 2575221 - gene protein_coding_gene FALSE TRUE AT3G08490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42860.1); similar to Os03g0216500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049384.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to CAA30379.1 protein [Oryza sativa] (GB:CAB53482.1) -0.0548253902622838 -0.623898050292105 0.545551758227112 1 -0.416701564981371 2.60479382249381 -0.0548253902622838 0.0560775998710884
AT2G22290_at 0.400204401423488 0.715412311358179 0.90898576177891 0.647898317965726 0.522671952494923 0.832428575216514 0.519772808549875 0.552038122019143 0.497676763701021 0.846048235385634 0.784919116747345 0.749113334812345 0.515492729058592 0.884314203102378 0.876164750496667 0.393350096089229 0.951163702412283 0.408733740857965 0.921520885988136 0.225050318892390 0.223169074943586 0.221711442674153 0.226179116383984 0.224594654401901 0.221711442674153 0.22734585541826 0.221711442674153 0.229418885723945 0.23726127967667 0.22604369130338 0.236263186630983 0.236162929411277 0.233911334926678 0.223668263801903 0.226941014673665 0.226046684122224 0.235514728049246 0.239034293859438 2 2|0 +|/ 9473697 9474711 9474331 9473524 9474768 + gene protein_coding_gene FALSE TRUE AT2G22290.1 AtRABH1d (Arabidopsis Rab GTPase homolog H1d); GTP binding similar to AtRABH1e (Arabidopsis Rab GTPase homolog H1e), GTP binding [Arabidopsis thaliana] (TAIR:AT5G10260.1); similar to 80A08_22 [Brassica rapa subsp. pekinensis] (GB:AAZ67607.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.0607318692659255 0.623813628831926 0.545605185239712 1 -0.416752931549428 1.36267074179519 0.0607318692659255 0.0890034277651845
AT4G36790_at 5.86704183566408 6.61075011846329 5.40336904482392 5.66404926589095 6.28176580831706 6.17747908480291 4.7532391341769 4.14311215783905 5.03274591726632 5.1786015420738 4.74962010879014 4.7421733150009 4.40345641158749 4.756183041862 4.1329622243401 4.97254880462324 4.51062068204852 4.4680355070847 4.68206618644656 0.264121812883894 0.254734396974782 0.254861117522078 0.255075278176842 0.249232761873632 0.262258601756138 0.260427934937994 0.257238624884128 0.267799903178693 0.260432826110009 0.251407406826006 0.253935403831341 0.261516293593458 0.264839895931267 0.252501946153212 0.252115567806695 0.252206911216893 0.264796625930807 0.256582945168261 4 4 + 17337718 17338232 17337971.818 17336177 17338376 + gene protein_coding_gene FALSE TRUE AT4G36790.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G18590.1); similar to membrane transporter PFB0275w-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC82966.1); similar to Os07g0208900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059164.1); similar to Os03g0809100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051655.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.0828043930388961 0.623784048970125 0.545623905869375 1 -0.416770928009796 10.3908114198370 0.0828043930388961 0.173416561111684
AT1G56310_at 4.63967235229725 4.78423829206842 4.47899921709688 4.34132869588965 4.83724783770382 4.93037244394968 4.37839984071934 4.51718409565205 3.91928562037137 4.07647392724339 4.12741952174063 4.20177168067428 4.18035009929103 3.80307819847415 4.30407826972784 4.01424776233293 4.42537387864395 3.56459994743241 4.11838843201844 0.220138846189793 0.218626479047872 0.221802146076790 0.227292472627046 0.233193727477102 0.22692238987993 0.221741656352571 0.22001252622478 0.218626479047872 0.220693617312014 0.222984477178432 0.218626479047872 0.227575427273679 0.221658857145511 0.218626479047872 0.221110579641409 0.231829302571525 0.218626479047872 0.221676174971306 1 1|0 +|/ 21088222 21088916 21088666.778 21086528 21088965 + gene protein_coding_gene FALSE TRUE AT1G56310.1 3'-5' exonuclease domain-containing protein similar to 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G24340.1); similar to Os05g0357100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055295.1); similar to Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] (GB:CAL52849.1); contains InterPro domain 3' (InterPro:IPR002562); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.0533394983604962 0.623763911208219 0.54563665095075 1 -0.416783179421452 8.67126247008916 0.0533394983604962 0.0450559856640262
AT1G09720_at 0.796198158710342 0.77593826565402 0.912601254330094 0.86185619467907 0.663783498010657 0.879565422657881 0.845501486418506 0.656026337418928 0.780372543889015 0.882447307239408 0.636690965220858 0.880081114970753 0.625928623274617 0.665510038229925 1.09155932404107 0.754231875138395 0.618683818758864 1.09975141129459 0.585725377852186 0.196850104201337 0.196850104201337 0.199103055817785 0.201515198673565 0.196850104201337 0.201785331657023 0.199629814424399 0.198500371470268 0.200512606108553 0.197748806981441 0.202647792051204 0.207209947272809 0.201671204284335 0.198729319066279 0.203075402016853 0.205295828627952 0.201105749341528 0.205313684670103 0.202775533126078 1 1 - 3144452 3145008 3144679 3144440 3147305 - gene protein_coding_gene FALSE TRUE AT1G09720.1 kinase interacting family protein similar to EMB1674 (EMBRYO DEFECTIVE 1674) [Arabidopsis thaliana] (TAIR:AT1G58210.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84476.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain KIP1-like; (InterPro:IPR011684) 0.0540375502041202 0.623689011367004 0.545684056139276 1 -0.416828743773378 1.57196868858144 0.0540375502041202 0.0505865143720104
AT1G23800_at 2.87848609685788 2.73214993150431 2.15966163013406 2.16175682479771 2.51408019669753 2.42687202744848 3.27644216060231 2.92385585603122 2.5916131428863 2.46309831616443 3.27998231915348 3.59118431943449 2.82637045585809 3.21257202159196 3.52349518329739 2.40374563397571 2.5700866688378 3.05815116813657 2.54841434829233 0.209207063488247 0.211537212667680 0.215569093603889 0.210062028819399 0.213232254194769 0.213450980612812 0.217309860398212 0.209926243567427 0.221521245427367 0.222219374738439 0.210034538667097 0.214184020263006 0.210332796440877 0.213897148970102 0.219321740887716 0.212798771081085 0.212280892528426 0.211057198258109 0.209971508641452 1 1|0 -|/ 8412248 8412997 8412687.7 8412041 8414868 - gene protein_coding_gene FALSE TRUE AT1G23800.1 ALDH2B7 (Aldehyde dehydrogenase 2B7); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Encodes a mitochondrial aldehyde dehydrogenase; nuclear gene for mitochondrial product. Identical to Aldehyde dehydrogenase 2B7, mitochondrial precursor (EC 1.2.1.3) (ALDH2b) (ALDH2B7) [Arabidopsis Thaliana] (GB:Q8S528;GB:Q94C67;GB:Q9ZUB6); similar to ALDH2B4 (ALDEHYDE DEHYDROGENASE 2), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G48000.1); similar to T cytoplasm male sterility restorer factor 2 [Zea mays] (GB:AAG43988.1); similar to aldehyde dehydrogenase [Vitis pseudoreticulata] (GB:AAZ79355.1); similar to aldehyde dehydrogenase 1 precursor [Lotus corniculatus] (GB:AAO72532.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.0566588196540766 -0.623632639725599 0.545719736102993 1 -0.416863033393071 5.4304499607092 -0.0566588196540766 0.0677661006004812
AT1G55700_at 1.56722279663841 1.44636809470586 1.73883391149000 1.66261804166627 1.04174773022478 1.56837270081571 1.47688063804277 1.66613268505296 1.17138056686210 1.54777776279514 1.61161662695034 1.15711454502767 1.27301437173884 1.85809353453272 1.64643328087933 1.29752842158336 1.74763522645739 1.84489953715905 2.21406039809112 0.245158475033353 0.246430953128047 0.242524570584162 0.241060960222694 0.24232254325435 0.239703606254659 0.243584336911794 0.239989852469868 0.250184567399906 0.241268612306992 0.257541208298649 0.239703606254659 0.243339992125930 0.242632565068300 0.253122125185079 0.240514950154469 0.267427170268851 0.242047392455947 0.250006212171099 1 1 + 20826727 20827253 20826990.909 20825267 20827306 + gene protein_coding_gene FALSE TRUE AT1G55700.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55380.1); similar to EDA11 (embryo sac development arrest 11) [Arabidopsis thaliana] (TAIR:AT1G55420.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G42280.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.0630611285512547 -0.623227639857752 0.545976116290903 1 -0.417109301466318 3.12049616764153 -0.0630611285512547 0.0999478577536617
AT4G32910_at 6.86374876206722 6.89609077949253 7.04808519587737 6.9928981135323 7.56013067416994 7.11949238703086 6.60924227438275 6.41309657760939 6.10833055948139 6.30579197111583 6.16245919391851 5.6259153791757 5.836842124792 5.9269604458906 5.78079138637797 6.14281854138005 6.19103026574998 6.19484548323585 6.62974594665844 0.202500220936565 0.201532799481512 0.204915774995700 0.208254555016332 0.197398786097548 0.205681341933288 0.201646148549755 0.203082661115288 0.204370734917033 0.198278373436719 0.201861159866749 0.203792168818747 0.198463524198821 0.196851448565711 0.201698638005043 0.192563956706437 0.204725467127240 0.203932168124346 0.193537512496995 4 4|0 +|/ 15884334 15885177 15884824.8 15881259 15885419 + gene protein_coding_gene FALSE TRUE AT4G32910.1 similar to Os01g0746200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044228.1); similar to putative nucleoporin Nup75 [Oryza sativa (japonica cultivar-group)] (GB:BAD87530.1); contains InterPro domain Nup85 nucleoporin; (InterPro:IPR011502) 0.0596793438722523 0.623140668333315 0.546031181445785 1 -0.417162166878655 13.1031801013454 0.0596793438722523 0.0841990268023139
AT4G19865_at 4.08920207618106 4.57882089864458 4.09409066036877 4.21724193123256 3.72698798461631 4.21705509927954 3.86040557302558 3.99284959548057 4.46621289236125 4.38770584211927 4.61104482196709 4.63161902482928 4.6354582081475 4.56639877025012 4.58966279665703 4.55670007775805 3.87148876875928 4.56444057017427 4.86979342371948 0.205476886923151 0.208789028922924 0.209761945942143 0.207384126846553 0.217395053257189 0.208904025694043 0.219854832941133 0.211178135918715 0.205202599272337 0.216700057125796 0.206062672719291 0.205418119851588 0.203899168454873 0.215089790633307 0.2148023204473 0.203509464484843 0.210714274900261 0.208156823083896 0.209285806795654 4 4 - 10781209 10781747 10781480.364 10780966 10782375 - gene protein_coding_gene FALSE TRUE AT4G19865.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G19870.2); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.0688473532704118 -0.623075379714506 0.54607252035235 1 -0.417201847904824 8.63604290196253 -0.0688473532704118 0.123900374356482
AT1G31640_at 1.19824959500693 1.07167244133435 1.26467359989463 1.16035977330537 1.21563274588994 1.32744406869292 1.51948757139757 1.16717270836988 1.80255952848317 1.60207081106634 1.48627842919377 1.80280913735713 2.11886840753687 1.68663733917099 2.16038484821945 1.61321956238993 1.74006458988235 1.5772178595113 1.58171844804374 0.220908284436467 0.215225594919861 0.209930943439863 0.211354008808289 0.211786692249191 0.213325511269059 0.211168615442192 0.213392836882933 0.210252328297298 0.220243373011482 0.209930943439863 0.213929251784022 0.215003522912197 0.216750727462718 0.212699458626237 0.211760560591401 0.220020515176650 0.209930943439863 0.211669231084549 1 1 - 11322969 11323328 11323177.364 11322673 11324157 - gene protein_coding_gene FALSE TRUE AT1G31640.1 MADS-box protein-related similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G31630.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE94129.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.0569753635225869 0.622898317230956 0.546184640232213 1 -0.417309443317099 2.95823720508085 0.0569753635225869 0.0699814498480234
AT1G30473_at 1.46534682360532 1.66970187933882 1.79291799356613 1.68748790107581 1.78488130657939 1.64978578894757 1.86391783498046 1.83247357605028 1.95203597494679 1.65586304114618 1.71980515714201 1.75220089732585 2.13770289414618 1.44352304880941 1.84860145579864 1.49071006263616 1.48876934835436 1.93077768891832 1.95487699646667 0.219649479653987 0.219353564149946 0.228953251749586 0.229041354554871 0.219007083880921 0.222905360645949 0.220786362601702 0.216560164458188 0.216186067455877 0.219499698315113 0.218143803508954 0.216186067455877 0.216292774935192 0.219913346163355 0.216186067455877 0.216186067455877 0.228323714563123 0.232974122881134 0.217342731160382 1 1 + 10787524 10788024 10787851.182 10787197 10788089 + gene protein_coding_gene FALSE TRUE AT1G30473.1 metal ion binding similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23882.1); similar to heavy metal-associated domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22362.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.0534195663316728 -0.622673790236957 0.546326834438768 1 -0.417445840727762 3.50869913301526 -0.0534195663316728 0.0464728411214015
AT3G09890_at 4.70894758441999 5.01449746425882 4.73564291027143 4.83717846531001 4.63544186890136 4.29575036120934 4.72535742379354 5.20724283053122 3.67302803869690 3.15090041279332 3.81028346051058 3.52313635013581 3.21950155255037 3.64607105188662 3.86614625163007 3.61718999013125 3.16032042796906 3.23871798314078 3.24363725615329 0.292872388567276 0.279263392714066 0.277680946687830 0.282657549816059 0.286649036381318 0.291541679027569 0.289394163724701 0.277680946687830 0.292344999122476 0.280873803495766 0.277680946687830 0.278010940185841 0.277979619735013 0.290111212191012 0.281972711917715 0.277680946687830 0.290935959405839 0.294874676650670 0.278045210997205 3 0|3 /|+ 3033381 3033968 3033583.25 3032564 3034448 + gene protein_coding_gene FALSE TRUE AT3G09890.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G19150.1); similar to Hypothetical protein with similarity to ankyrins and BRCA1-associated ring domain proteins [Oryza sativa] (GB:AAK98740.1); similar to Os03g0145800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048952.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0668461383573535 -0.622417911389299 0.546488909506359 1 -0.417601228487395 8.2030204232747 -0.0668461383573535 0.116252819541976
AT2G05500_at 1.64440257018527 1.25339461986551 1.75030487399771 1.93335350280944 1.35775511594548 1.54580015937355 1.26259279440328 1.60661601226705 1.63646059943795 1.96252365051677 1.40654932426939 1.47485374362055 1.38035609401661 1.62718614345002 1.71487602924170 1.59807283005227 1.66165545645304 1.84492976872466 2.16104394603718 0.180519755518827 0.189489878396531 0.182196291618442 0.184012939182205 0.181136276401177 0.181361455157110 0.182462777409009 0.187152465596368 0.187142840019514 0.183878904887835 0.187649783170185 0.178030804476322 0.182825687753942 0.186426242965854 0.184471093868277 0.186789556628369 0.182602255930639 0.18078346031627 0.178568554096266 2 2|0 -|/ 2014383 2015360 2014804.3 2014365 2015403 - gene protein_coding_gene FALSE TRUE AT2G05500.1 unknown protein -0.0631987805420841 -0.622402727828848 0.546498527712475 1 -0.417610447161740 3.29856211730216 -0.0631987805420841 0.100923208493781
AT4G29640_at 2.58477754164505 2.21082275475181 2.46515051102637 2.05716103467571 1.95500976679644 2.40252718945839 1.93298930417431 2.61531465289839 2.72228941284891 2.03848872674696 2.32239139135702 2.45583320217317 2.23880367734888 2.67374709558353 2.28066056002794 1.95335350249031 2.43666856761298 2.50344384234173 2.45613588021253 0.174068723853459 0.177293069702738 0.185048563839469 0.174257753711943 0.177804825202367 0.175927137092646 0.174068723853459 0.188590142634463 0.188368513140502 0.179595820831246 0.181803148067169 0.18394071829453 0.181895588107135 0.177709049478709 0.179306052234494 0.174908762706231 0.184418373853582 0.175226017620839 0.184008405775503 4 4 + 14526313 14526831 14526530.455 14525836 14526876 + gene protein_coding_gene FALSE TRUE AT4G29640.1 cytidine deaminase, putative / cytidine aminohydrolase, putative similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29610.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) -0.081769607307008 -0.622250031300565 0.54659526046401 1 -0.417703145034385 4.65984446266318 -0.081769607307008 0.170626748970988
AT3G21830_at 0.628952556663729 0.658242877051802 0.830585719118292 0.972250770104408 0.459720407705185 0.777698014244131 0.716430158571067 0.59270592374931 1.2524293567824 0.91608843370768 0.757853920957733 1.05905209025504 0.88267793716736 0.787277308180436 0.390148060604099 0.792699535084886 0.664743165151566 0.823598178512731 0.809200431840915 0.195718955112167 0.195111085245019 0.197849628897858 0.198851876718189 0.195111085245019 0.196869868197057 0.195111085245019 0.195250779392662 0.206169794593468 0.197845207481974 0.197125345493129 0.201745573680608 0.196602572686397 0.195111085245019 0.205713722994547 0.195662683058568 0.205087466775955 0.202709534630260 0.197090349208868 3 3 - 7693557 7693896 7693670.727 7693488 7693946 - gene protein_coding_gene FALSE TRUE AT3G21830.1 ASK8 (ARABIDOPSIS SKP1-LIKE 8); ubiquitin-protein ligase similar to ASK9 (ARABIDOPSIS SKP1-LIKE 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G21850.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) -0.0559178087518696 -0.622149227327932 0.546659124761995 1 -0.417764328817159 1.58573781103410 -0.0559178087518696 0.0641340570265047
AT1G62640_at 6.51551844608175 6.26179594236134 5.44099862049314 5.7206561235765 6.21473473171738 5.81833708496745 6.90147779537785 6.88344978501218 6.19937645258097 6.40829298396968 7.46010035234356 7.83110961651804 6.57890711948621 6.84391559068542 7.28051229917951 6.76196135004844 6.51764532668681 6.78683105118107 6.26028524276726 0.199477280829899 0.201007137178224 0.218195174389046 0.200317016872001 0.216465478317707 0.205265111933088 0.208578529974326 0.199477280829899 0.217363973806052 0.209130834185317 0.209492902315030 0.200334469275068 0.208623032829217 0.202007598659802 0.206018349809540 0.202224728266362 0.209953795441266 0.204704163335921 0.207786825157704 1 1|0 +|/ 23197290 23198358 23197965.667 23195893 23198768 + gene protein_coding_gene FALSE TRUE AT1G62640.1|AT1G62640.2 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier-protein] synthase 3-ketoacyl-acyl carrier protein synthase III (KAS III) Identical to 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase III) (KAS III) [Arabidopsis Thaliana] (GB:P49243;GB:P93722;GB:Q9SI84;GB:Q9SXD3); similar to 3-ketoacyl-acyl carrier protein synthase III (KAS III) (GB:AAA61348.1); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; (InterPro:IPR013751); contains InterPro domain Beta-ketoacyl-acyl carrier protein synthase III (FabH); (InterPro:IPR004655); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; (InterPro:IPR013747) -0.0617871200964146 -0.621950041087296 0.546785331505422 1 -0.417885199516121 12.8680915985512 -0.0617871200964146 0.0947921878849694
AT1G43690_at 7.49945495948431 7.91366730242463 7.65046885738101 7.72764688401757 7.9176146537843 7.67362442299513 7.76796043934587 7.84950448793232 7.15113409055434 7.04503397235736 7.23325528863981 7.43038318788732 7.52786513868076 7.33947455085163 7.06154918093665 7.543923420293 6.94844523485203 6.96546157303988 7.16797256190032 0.206611287705292 0.201934406242592 0.209139787588689 0.209075492117994 0.207532124838860 0.219246342787472 0.199905468321727 0.206142574819538 0.205215111019577 0.219026199666723 0.202377881550937 0.199505411804805 0.203901586717046 0.209917268426236 0.2011009295816 0.201869131161748 0.227132970812631 0.198409601667683 0.214168531682739 1 1 + 16484441 16484991 16484755.455 16480687 16485277 + gene protein_coding_gene FALSE TRUE AT1G43690.1 ubiquitin interaction motif-containing protein similar to H0525E10.10 [Oryza sativa (indica cultivar-group)] (GB:CAH66926.1); similar to OSJNBa0028I23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAE04637.3); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.0598031979373412 0.621833719231384 0.546859042026209 1 -0.417955769659237 14.9388302035048 0.0598031979373412 0.0854317045756085
AT4G10820_at 2.15763183752225 2.45993328895626 2.05318311048097 2.52437567080087 1.68747881943957 2.46125564141612 1.75538904444664 2.33863563022148 2.69306433805999 1.965857024189 2.08180237707877 2.04195465857031 2.16082244602054 2.53375299302895 2.40434092549461 2.08853644681839 2.27565957923767 2.26776888208342 2.57982529556166 0.203278900157489 0.201327872120035 0.203892988233611 0.204055041200749 0.211415805899897 0.201327872120035 0.211933559722916 0.201562493953927 0.210740661946979 0.214527290973222 0.213375229348274 0.201673959764861 0.210536670382075 0.203456073945719 0.204493072741231 0.205464737271472 0.203749033184615 0.202503043530045 0.201751765411703 4 4 - 6648018 6648404 6648208.182 6648005 6648905 - gene protein_coding_gene FALSE TRUE AT4G10820.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G25290.1) -0.0887049519071224 -0.621775667055659 0.546895830475857 1 -0.417990984179642 4.50210805098309 -0.0887049519071224 0.193660134297483
AT2G39950_at 6.56269026374446 7.00035873341645 6.90924650835234 6.96133679450358 7.02356010144414 6.90783589845828 7.21657401838378 7.4378435436097 6.87265548433155 6.561218003884 6.60121259146178 6.65180938277033 6.90549674002272 6.82503498101954 6.14448541990907 7.47196336675166 6.93002355721329 6.53280394219003 6.88946666198405 0.181209135542886 0.178722054791694 0.182303423612260 0.178016303539598 0.177027266446855 0.198270199756039 0.185037079994894 0.180063845219935 0.177926572074074 0.186447815849864 0.183772167388388 0.177520882679429 0.181613304996864 0.181135260396658 0.180630770478743 0.175261746117527 0.189774609339736 0.178783709053693 0.180571320805073 2 2 - 16683838 16684380 16684123.364 16683620 16687567 - gene protein_coding_gene FALSE TRUE AT2G39950.1|AT2G39950.2 similar to Os07g0100500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058671.1) -0.0602323915824527 -0.621539052272982 0.547045790950485 1 -0.418134483493255 13.7685809649393 -0.0602323915824527 0.0876653628489138
AT1G79620_at 1.99833178418975 2.05865483933690 2.0304148644039 2.01038879981057 2.01729513794925 2.08212479423881 2.26314136095328 2.81383714194789 2.71228428136897 2.56625767097546 2.72565326740028 3.59472461497707 2.80673607467678 3.51284881860774 3.57734980980321 2.74265905438923 3.14321221205872 2.86071067919606 2.96477454900080 0.215862084578964 0.213501166149554 0.214975315376514 0.214530017181726 0.214012943432173 0.212584111146132 0.222815267012666 0.210054235902017 0.222654061926387 0.212188609467887 0.210054235902017 0.212622501123948 0.213475194261434 0.214472589816598 0.215466530223918 0.220362876480683 0.216107553236700 0.213304096655188 0.210146070210550 1 1 - 29962547 29963145 29962810.273 29962455 29967198 - gene protein_coding_gene FALSE TRUE AT1G79620.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G49780.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G49770.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49760.1); similar to putative receptor protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT01330.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95747.1); similar to putative receptor-like protein kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD82283.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0621396333836202 0.621535200662681 0.547048232196221 1 -0.418136818953496 5.09340308210565 0.0621396333836202 0.096586928955898
AT2G46470_at 4.17825852783148 4.55408680801694 3.53702412390409 3.46338617915606 4.20660005717902 4.15689373444514 3.7687139208457 3.38334707142429 3.96562258218586 3.60411510838496 3.96914588608918 4.27259266841643 3.00297451370272 3.85590353532288 4.38268449279025 4.16560059771619 3.22355925453377 3.85419981351706 3.93225111316801 0.251614620556962 0.250457620149831 0.261723217541288 0.258295616043769 0.250457620149831 0.262152323399261 0.257300650062230 0.256922040139085 0.266723815008998 0.260208800637410 0.250780876974158 0.250457620149831 0.259136110686877 0.262266826314289 0.252583814901798 0.252288173699781 0.260276818958086 0.251350284336892 0.258185272701874 2 2|0 +|/ 19081029 19081941 19081541.2 19079385 19082195 + gene protein_coding_gene FALSE TRUE AT2G46470.1 OXA1 protein, putative Identical to Inner membrane protein OXA1-like, mitochondrial precursor (OXA1L) [Arabidopsis Thaliana] (GB:Q9SKD3); similar to OXA1 (Oxidase assembly 1), protein translocase [Arabidopsis thaliana] (TAIR:AT5G62050.1); similar to putative Oxa1 protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13422.1); similar to Os10g0521300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065089.1); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708) -0.0616446155052061 -0.621345015297704 0.547168784042125 1 -0.41825212296907 7.74345323443734 -0.0616446155052061 0.0944136145869011
AT2G17860_at 1.01436046260762 0.785330689761579 0.8845952643334 1.06575333756573 0.464448527772772 0.956185354470014 0.806533441693453 1.20892926701733 1.58108860165589 0.65081176846088 0.871436754134602 0.944215842202267 1.22073958129921 1.01200923391179 0.732314876259785 0.802451157196388 1.23791173516329 1.21128737152734 0.854635473687123 0.216246737309749 0.218038983799298 0.229159754074105 0.221389022449376 0.225658103556440 0.216246737309749 0.216246737309749 0.221169133690245 0.220345681419543 0.219399163192288 0.216246737309749 0.216246737309749 0.225803876401217 0.217698199321395 0.224243004676163 0.219492017589256 0.232839579858824 0.225052358894365 0.219828233077607 2 2 - 7769370 7769904 7769596.818 7769339 7770100 - gene protein_coding_gene FALSE TRUE AT2G17860.1 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT4G36010.2); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) -0.067921153270323 -0.621339674356298 0.547172169694813 1 -0.41825536055913 1.91471259326764 -0.067921153270323 0.121014639482521
AT2G33340_at 10.1220634841392 10.2907415720618 10.1896054485147 10.1100014447443 10.5028598289175 10.4823576991230 9.74428141818679 9.79977404466858 9.92025424545117 9.81550134013631 9.92299587710704 9.6464540180818 9.90040641140927 9.40800812196024 9.39502118482995 9.7756754167334 9.81481951963245 9.62649887019239 10.0073611901074 0.109519420090696 0.105433046001182 0.112216434593048 0.106152734565765 0.103885059825799 0.105956174070276 0.104499246382268 0.108096464535575 0.117171500309864 0.106369427065178 0.100481703245411 0.100481703245411 0.106108404831763 0.113794407245650 0.113102175263839 0.104756658627784 0.105043337821599 0.109932262384992 0.10297209360792 2 2|0 -|/ 14133590 14134597 14133837.444 14133294 14138220 - gene protein_coding_gene FALSE TRUE AT2G33340.1|AT2G33340.2|AT2G33340.3 transducin family protein / WD-40 repeat family protein|nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G04510.1); similar to Os10g0466300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064804.1); similar to hypothetical protein MtrDRAFT_AC146759g5v1 [Medicago truncatula] (GB:ABE87995.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain U box; (InterPro:IPR003613)|similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G04510.2); similar to Os10g0466300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064804.1); similar to hypothetical protein MtrDRAFT_AC146759g5v1 [Medicago truncatula] (GB:ABE87995.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain U box; (InterPro:IPR003613) 0.0519268222445779 0.621193708915659 0.547264702591878 1 -0.418343832407273 19.9555142105736 0.0519268222445779 0.0338625412335540
AT4G29980_at 0.73028551547756 0.716682250078322 1.40335222277003 0.501638087894227 0.7502152553225 0.941558069016236 0.604321329507833 0.789556880695087 0.396272603803424 1.15071751930031 0.51803003540467 0.904511052358954 1.02166632645128 1.16965219668300 0.75341148412445 1.11602523062304 0.623783762677218 1.05881091969696 1.23180421375737 0.207141798525417 0.203162085479532 0.214378239608859 0.202112335778875 0.207911300182379 0.203056830647312 0.200585084983794 0.201901708221036 0.214335501825435 0.210023647676497 0.216554134559937 0.199620596618687 0.198616654074196 0.213572013653557 0.210557396567863 0.211824929078506 0.213001732880333 0.203656656725061 0.210468524426507 4 4 - 14665052 14665457 14665216.273 14664960 14665589 - gene protein_coding_gene FALSE TRUE AT4G29980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30800.1); contains domain FAS1 domain (SSF82153) 0.0792255059298969 0.620535651261659 0.547681979548383 1 -0.41874245193466 1.71570177882330 0.0792255059298969 0.162726394248318
AT3G11320_at 4.74838036878962 4.8205274831759 4.42067629323327 4.59523940515711 4.34471494187028 4.6390823128273 4.05557210021117 4.31893360314672 4.67031427512238 4.21942100388655 4.93267652522566 4.97033013698273 4.55926145192174 4.58880607794171 4.38459037393456 4.25662361322561 4.09083678822287 4.21235471001781 4.3039969832669 0.248822831672672 0.267581462378386 0.254179024830095 0.248678951844979 0.271562601968995 0.255616649217592 0.250799487224702 0.260466292427358 0.257253382559375 0.253036466812192 0.261277580958558 0.253967523201822 0.251998348099697 0.249607146894485 0.253684959162964 0.248678951844979 0.25920847231191 0.25643244218561 0.268847549967931 3 3|0 -|/ 3547069 3547459 3547292.857 3546652 3548862 - gene protein_coding_gene FALSE TRUE AT3G11320.1 organic anion transporter similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT5G05820.1); similar to plastidic phosphate translocator-like protein2 [Mesembryanthemum crystallinum] (GB:BAD91177.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0577995275166404 0.620517390411932 0.547693561388725 1 -0.418753507893106 8.94156367043944 0.0577995275166404 0.0757672996510346
AT3G10690_at 5.55141480665948 5.42558258063535 5.71827530885085 5.83846726132725 4.82400593797848 5.08250489329641 6.35072980267487 5.73334044883104 3.83202385726306 4.89479257679454 4.34199172410552 5.00395742051122 4.23981872097975 4.82885242441035 5.80095584800247 5.06505466447931 5.72596192762378 4.22084697019806 4.3802304378888 0.242893453002078 0.241674098692787 0.243428306810516 0.24936323616108 0.241674098692787 0.257417725104176 0.251355570554706 0.255099243826085 0.265914488506087 0.245599528327386 0.241674098692787 0.241674098692787 0.246903820262943 0.249082853811647 0.241674098692787 0.249028648703465 0.261340208010643 0.251660800768774 0.246345701304572 3 3|0 -|/ 3339818 3340629 3340347.875 3339397 3346345 - gene protein_coding_gene FALSE TRUE AT3G10690.1 DNA gyrase subunit A family protein Identical to Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (EC 5.99.1.3) (GYRA) [Arabidopsis Thaliana] (GB:Q9CAF6;GB:Q9SG75); similar to TOPII (TOPOISOMERASE II), ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT3G23890.1); similar to Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (GB:Q7XZF7); similar to putative DNA gyrase subunit [Oryza sativa (japonica cultivar-group)] (GB:AAP73860.1); similar to DNA gyrase subunit A, chloroplast/mitochondrial precursor (GB:Q5YLB5); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain DNA topoisomerase, type IIA, subunit B or N-terminal; (InterPro:IPR001241); contains InterPro domain DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; (InterPro:IPR006691); contains InterPro domain DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta; (InterPro:IPR013758); contains InterPro domain DNA gyrase, subunit A; (InterPro:IPR005743); contains InterPro domain DNA topoisomerase, type IIA, central; (InterPro:IPR013760); contains InterPro domain DNA topoisomerase, type IIA, subunit A or C-terminal; (InterPro:IPR002205) 0.0674803896098688 0.620381381205296 0.547779828810534 1 -0.418835844639128 10.2017629232922 0.0674803896098688 0.119679678322469
AT3G42350_at 1.06188288934915 1.2175912798141 1.53617257644109 1.52944079610498 1.22427645663337 1.16236471612112 1.03238736828576 1.18118878769648 1.34116193263080 1.21143854531938 1.36528036396753 1.06490505191145 1.19453206275566 0.929252503789205 1.21088776733199 1.00557768596738 1.19391540360476 1.41791759317116 1.37107872861272 0.193729394081915 0.192784301096959 0.193644828589754 0.187580998729818 0.190680415853916 0.194498064472026 0.192726697833882 0.187580998729818 0.19572666609217 0.193720282111080 0.190534474447912 0.190371649448996 0.19602012704308 0.189807613584157 0.200748111228657 0.197303421523713 0.196178059083203 0.199330575253177 0.193972062195568 3 3|0 -|/ 14501052 14503494 14502180 14500913 14503573 - gene protein_coding_gene FALSE TRUE AT3G42350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G06095.1); contains domain RAS-RELATED GTPASE (PTHR11708); contains domain RAC-GTP BINDING PROTEIN (PTHR11708:SF12) 0.0523457701234309 0.620379856157307 0.547780796155915 1 -0.418836767772178 2.4835014202641 0.0523457701234309 0.0387987420676112
AT4G33690_at 5.62213402801824 5.98764492606019 6.01769619973699 6.05321989096194 5.7225493553818 6.42779657258924 5.45282289347434 6.14110039580193 6.07271156814592 5.7844322874395 5.64306341435097 5.66392112394429 5.42951981404352 5.51387631751995 5.76157497957302 5.68381167976738 5.51274768886246 5.5343149969507 6.19410952704359 0.249415915789915 0.249415915789915 0.249415915789915 0.265948981442429 0.250991237296209 0.283416360003758 0.257476012520505 0.256723826280618 0.254816011091784 0.257698323289138 0.251806044016439 0.2534495242245 0.256131983568152 0.264872003249944 0.253731283649569 0.256689638852449 0.270167942984399 0.264828871565656 0.265138808859580 4 4 + 16175631 16175961 16175806.5 16174821 16176256 + gene protein_coding_gene FALSE TRUE AT4G33690.1 similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G23900.2); similar to Os07g0213400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059181.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05599.1) -0.084920382585488 -0.620307412391319 0.547826748702032 1 -0.41888061658292 11.7330896391295 -0.084920382585488 0.181992277683371
AT2G05180_at 1.43759321966550 1.78090518156994 1.79988774928206 1.61426163250352 1.50072571620150 1.70360024497006 1.38502635570351 1.46628817065342 2.02434862131837 1.76163901253698 2.09927597545167 1.61334260345672 1.58122767011666 1.44305816241592 1.98320440977982 1.71993338976375 1.76120526936456 1.95384057871715 1.58527523909242 0.199094084284321 0.194140114447464 0.195106407587878 0.194929558371921 0.195083985268714 0.199617451973231 0.195794451899812 0.199847566692175 0.196924329779059 0.200718850035339 0.192115469304965 0.195945186051031 0.204198659647453 0.194727761963999 0.204462340225228 0.195486826860874 0.198751271946573 0.199865299816946 0.192731431350129 2 2 + 1876128 1876755 1876515.182 1875387 1876791 + gene protein_coding_gene FALSE TRUE AT2G05180.1 CYP705A6 (cytochrome P450, family 705, subfamily A, polypeptide 6); oxygen binding member of CYP705A similar to CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20130.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0580653267876103 0.620077988991139 0.547972290974243 1 -0.419019450823772 3.36593951633496 0.0580653267876103 0.0774082071849733
AT4G37490_at 1.33949585878571 1.21183519913504 1.54540670752166 1.5580755484434 1.25503260704875 1.67590630852577 1.60061100237453 1.13543774429514 1.77811785587196 1.96480288020246 1.71532502416275 2.01202742857694 1.4800604047415 1.12481560602049 1.57029895677531 1.96836882503662 2.09317813504532 1.91082760817967 1.62906860217408 0.203110363523256 0.190584982072454 0.191333926147329 0.193183859008981 0.192082940609667 0.193765548795030 0.198808423862643 0.204664137724841 0.196346410048929 0.190246631971805 0.193516013827047 0.193495853923006 0.203018982730461 0.193196783541321 0.196568233157558 0.198410786667018 0.192067770618939 0.19556382183066 0.192594534348801 4 4|0 -|/ 17622123 17622922 17622453.1 17621880 17624279 - gene protein_coding_gene FALSE TRUE AT4G37490.1 CYC1 (CYCLIN 1); cyclin-dependent protein kinase regulator Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. Identical to G2/mitotic-specific cyclin (B-like cyclin) (CYC1) [Arabidopsis Thaliana] (GB:P30183;GB:Q42081); similar to CYC1BAT (CYCLIN B 1,2), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G06150.1); similar to mitotic cyclin [Sesbania rostrata] (GB:CAA99990.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0652299887775568 0.61970538601449 0.54820871044682 1 -0.419244827944275 3.17773805267466 0.0652299887775568 0.110806156122097
AT2G27830_at 9.26534502196248 9.59368649758239 9.13753162955075 9.45537073909702 10.3337631784645 9.78956441499897 9.0262852394655 9.11129555969425 7.28053843360153 7.54992655969165 6.80694403468526 6.63177686559442 8.14941830580568 7.75479683221453 5.35636545068895 8.0141727860089 7.87778353105792 7.49248455571314 7.82993647367583 0.23713518729134 0.231388518585850 0.241781498426533 0.238911666845752 0.233507429939642 0.240234173264476 0.231388518585850 0.231388518585850 0.248287444508609 0.236627802788026 0.244449165679235 0.250115659166216 0.237452463428901 0.238734339642673 0.240693712566352 0.232884451424416 0.244735054584361 0.244321919782213 0.23881462986178 2 2 + 11867879 11868359 11868086.909 11867295 11868552 + gene protein_coding_gene FALSE TRUE AT2G27830.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G22760.1); similar to hypothetical protein [Catharanthus roseus] (GB:CAC09928.1) 0.0684525252082138 0.619611423970016 0.548268339183392 1 -0.41930164313628 16.8710727605407 0.0684525252082138 0.123853092979973
AT4G38130_at 9.28784263555045 9.36757459664894 9.07951765421534 9.22257439037167 9.60544603914346 9.12789976208927 9.34291472843105 9.35992356039246 9.24723813799531 8.89552440914873 9.41135069097914 9.3374920701 9.2746247788021 9.35937240787501 9.22938012904203 9.08489572203504 8.92862219587397 9.19317483500801 8.93744736728144 0.112206275133121 0.116311105099435 0.117288100027411 0.113407611860557 0.111624056260493 0.116933582645528 0.117632342920992 0.116538194317657 0.126595224019788 0.120107618725973 0.112390773723448 0.113443711109937 0.114955294721222 0.115201974572371 0.110108831725946 0.109922766047269 0.128694653982217 0.115903024970695 0.110223342217301 4 4|0 -|/ 17896504 17898015 17897597.625 17896286 17899485 - gene protein_coding_gene FALSE TRUE AT4G38130.1|AT4G38130.2 HD1 (HISTONE DEACETYLASE 19, HISTONE DEACETYLASE19); histone deacetylase|HD1 (HISTONE DEACETYLASE 19, HISTONE DEACETYLASE19) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Identical to Histone deacetylase (HD) (RPD3A) [Arabidopsis Thaliana] (GB:O22446;GB:Q9SZL3); similar to HDA6 (HISTONE DEACETYLASE 6), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G63110.1); similar to histone deacetylase HDA101 [Zea mays] (GB:AAK67142.1); similar to histone deacetylase [Mesembryanthemum crystallinum] (GB:AAF82385.1); similar to Histone deacetylase superfamily [Medicago truncatula] (GB:ABE78429.1); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286); contains InterPro domain Histone deacetylase; (InterPro:IPR003084) 0.0599615233859008 0.619273124830156 0.548483055662329 1 -0.419506133339441 18.4262620417834 0.0599615233859008 0.0874161036550908
AT1G20930_at 3.33961930479071 3.34041277564053 3.29250564525302 3.33105589491532 3.05986627718575 3.09708706193988 3.04011232897099 3.8200293849808 3.07598268886631 3.53732978250975 3.36315742878475 4.09787333904827 3.67825666026554 2.79320904105639 3.76928368455027 3.61891846377034 3.27167578466472 3.83560728514641 3.04905978096662 0.210977186905130 0.207815204607070 0.207780443948866 0.20599232916888 0.217042206098385 0.212489257552128 0.208087046320233 0.209440820700573 0.227844331269873 0.208369174588587 0.214998522467694 0.211024116680166 0.208819166712341 0.211648002523147 0.206961423096398 0.216251890495057 0.205212171074477 0.209521176621978 0.220650148680636 1 0|1 /|- 7292746 7293747 7293255.333 7292559 7294735 - gene protein_coding_gene FALSE TRUE AT1G20930.1 CDKB2;2 (CYCLIN-DEPENDENT KINASE B2;2); kinase Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. similar to CDKB2,1 (CYCLIN-DEPENDENT KINASE B2,1), kinase [Arabidopsis thaliana] (TAIR:AT1G76540.1); similar to cyclin-dependent kinase [Populus tremula x Populus tremuloides] (GB:AAP73784.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.071396115678839 0.619216919803342 0.548518733259959 1 -0.419540097319809 6.67723031505549 0.071396115678839 0.135286555950116
AT2G19060_at 2.14485293126700 2.20600609008584 1.88790779557385 2.34350647035009 2.1568898627481 2.42209465507745 2.01168431522885 2.37895093897974 2.17551564308801 2.32390671585836 2.61419750793907 2.49493188923096 2.11464336777185 2.00510327912486 1.81510518854198 2.09888990829764 1.73914723637757 2.39544611303108 2.42352795986027 0.185718268645242 0.181139861311551 0.178302417331885 0.191426621690554 0.181224240944907 0.178302417331885 0.181780904225635 0.18767002532108 0.181311276935454 0.182770087191195 0.180467531821190 0.183356266617988 0.186836404326154 0.182865889504003 0.180588433668624 0.178302417331885 0.182561716957147 0.185063627531141 0.183582103743747 2 2 + 8265586 8266862 8266316.091 8264082 8267627 + gene protein_coding_gene FALSE TRUE AT2G19060.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G19050.1); similar to putative proline-rich protein [Oryza sativa (japonica cultivar-group)] (GB:BAB56037.1); similar to Os01g0748500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044240.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0653704589662429 -0.619028850502876 0.548638124646065 1 -0.419653724422081 4.42765321619299 -0.0653704589662429 0.111687744648622
AT4G29170_at 1.42252591236947 1.55001756727325 1.62043084296073 1.35712124152745 1.13252342800961 1.70671630373103 1.27574269679034 1.55249330591918 1.58361417360229 1.22842629885175 1.51235012899725 1.56777874721381 1.24327239861900 1.36881924098696 1.46744592337710 1.11965441850440 1.66981936132601 1.17407195962348 1.77761739888144 0.216171214984739 0.212381289013763 0.209430057116225 0.209430057116225 0.211523527518794 0.215518563619600 0.212232067107911 0.209597904631458 0.211715059745846 0.213147991108605 0.213773105276386 0.210440463866496 0.215866863000601 0.210586624279565 0.215371497345498 0.209523593549543 0.219464147857897 0.215865432886800 0.209430057116225 4 0|4 /|+ 14383852 14384728 14384253.444 14382845 14385381 + gene protein_coding_gene FALSE TRUE AT4G29170.1|AT4G29170.2 ATMND1 A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis. similar to hypothetical protein LOC618239 [Bos taurus] (GB:NP_001033312.1); similar to Os09g0280600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062766.1); contains InterPro domain Mnd1; (InterPro:IPR005647) -0.0677406756558378 -0.618869878522542 0.548739055715258 1 -0.419749746648782 2.91234015204405 -0.0677406756558378 0.121369742250995
AT4G29570_at 1.27030578910085 1.46409841584461 1.51250888356610 1.46869611221607 0.924132372087488 1.49292994498801 1.29588558820853 1.08346330359653 1.22985352393484 1.29320457602298 1.63754235935110 1.16438286139816 1.72579777173957 1.17583702830492 1.46346716462880 1.13432858439259 1.08548305620149 1.59297576073688 1.41748507002375 0.21532688323598 0.211876693207767 0.210049159153637 0.210137141194404 0.216194315674443 0.214008465501188 0.214893288471746 0.210804326743628 0.220401575791469 0.223030263583083 0.223520427557233 0.20966298744932 0.224018796729031 0.212160581644246 0.211799736816073 0.219087373024133 0.220017217306137 0.222342260169702 0.216782383565506 4 4 + 14507693 14508249 14507931.727 14507404 14508488 + gene protein_coding_gene FALSE TRUE AT4G29570.1 cytidine deaminase, putative / cytidine aminohydrolase, putative similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29580.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE79232.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) 0.0650454936885606 0.618521234220568 0.548960446127158 1 -0.419960254671422 2.65699815787005 0.0650454936885606 0.110555934668055
AT3G20475_at 1.19449881311700 0.92289735996152 1.10878853161557 1.14839662269519 0.877042019597458 1.49832219859976 1.19730255506728 1.20138235889913 1.5515650916627 1.69793748839718 1.61005577765254 1.39149256785748 1.11763089414730 1.79802388602388 2.06982983906128 1.17096670363454 1.97142845779274 1.63504552130067 1.22406572147241 0.228118813030198 0.234952402314171 0.224268641283075 0.220731935098250 0.220731935098250 0.229311461569914 0.238956960069244 0.225734428995126 0.226990289684924 0.222346059638989 0.220731935098250 0.221204951014646 0.229610252025379 0.226082816522556 0.220731935098250 0.223553265700253 0.244608124370969 0.226942239968026 0.237228856545528 3 3|0 +|/ 7149338 7150773 7150023.714 7148223 7150943 + gene protein_coding_gene FALSE TRUE AT3G20475.1 ATP binding / damaged DNA binding similar to MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) [Arabidopsis thaliana] (TAIR:AT4G25540.1); similar to hypothetical protein [Neurospora crassa OR74A] (GB:XP_963830.1); similar to Os05g0498300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055948.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432) 0.0667434217277338 0.618496893937365 0.548975904177344 1 -0.419974946990159 2.68695312733306 0.0667434217277338 0.117542449583154
AT4G38760_at 1.56348832366243 1.80481174923271 1.78659639692696 2.28421296756004 2.45138982911964 2.28405126725705 2.8873766278993 2.26169803073898 2.02552208821386 2.04615470062997 1.80537214472361 1.90779405154712 1.60361396847154 1.55984041631102 2.13023217906723 1.8443748454856 2.13585786213699 1.8455118341242 2.15466443868693 0.228490444612043 0.225039482893548 0.231628607210908 0.229359934123571 0.232510296376028 0.224174195628881 0.232966329013368 0.234907232121520 0.227982077410234 0.228884372650487 0.228088822618459 0.224174195628881 0.239412572114948 0.224174195628881 0.228388325730869 0.225311951852803 0.224174195628881 0.226779882165374 0.230633941950867 4 4|0 -|/ 18091834 18092911 18092363.8 18091796 18095595 - gene protein_coding_gene FALSE TRUE AT4G38760.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM46049.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM14698.1) -0.0745767403888014 -0.61823135037481 0.549144561781217 1 -0.420135199978067 4.13021401833814 -0.0745767403888014 0.147384790862362
AT3G01460_at 5.10607931612506 5.55161359982269 5.42031031485429 5.13214084875026 5.52992528573323 5.58679468587927 5.30381162488936 5.30272556572256 5.17196203485837 5.10798096192416 5.0440905894515 5.3448379880936 5.13846496016334 5.00872986592556 5.16710486188138 5.19784275315274 5.02420757463221 5.11739933394334 5.04951276738673 0.205124117757049 0.194309489978286 0.201643982953957 0.205981506964928 0.197464331937558 0.206233765073984 0.200145334473467 0.203124047357380 0.198407820819354 0.200585590367225 0.201115032805502 0.205530334976062 0.200867459908391 0.208744662667435 0.203343670726143 0.1948807150725 0.205529222803431 0.197797687528513 0.1939921966496 3 3 + 181356 181960 181684.273 173323 182461 + gene protein_coding_gene FALSE TRUE AT3G01460.1 MBD9 (METHYL-CPG-BINDING DOMAIN 9); DNA binding Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT1G77250.1); similar to Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) (ISS) [Ostreococcus tauri] (GB:CAL51590.1); similar to Os02g0192400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046163.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888) 0.06087570500669 0.618059368799285 0.549253809916408 1 -0.420238955166047 10.4867518197030 0.06087570500669 0.0923498795122284
AT2G47520_at 2.49767495373007 2.42849443100849 2.64791788301100 2.21167471353831 2.11345596373320 2.48399275997342 2.02282392718636 1.68739957348570 2.68216726702321 2.20367670244406 2.60449703410306 1.86895310062897 2.43764370372586 2.26894752766267 2.57953752860493 2.33406829781666 2.78387487400239 2.69816827719986 2.67383430561162 0.21923556860854 0.218277043304779 0.21883535264916 0.226978467414601 0.225643522798995 0.222184602588154 0.22861135500775 0.222445534418641 0.225986683588232 0.222295853869857 0.221944639744265 0.221309999634954 0.2215880295872 0.218327019346783 0.217239688621300 0.218066665421877 0.217239688621300 0.219431757201879 0.221171257121023 2 2|0 -|/ 19509997 19510534 19510251.1 19509872 19510639 - gene protein_coding_gene FALSE TRUE AT2G47520.1 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. similar to ATEBP/RAP2.3 (RELATED TO AP2 3), DNA binding / protein binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G16770.1); similar to ethylene-responsive factor-like protein 1 [Capsicum annuum] (GB:AAS20427.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0661153216598732 0.617494060948251 0.549612997643352 1 -0.420579812557605 4.74510630137216 0.0661153216598732 0.115429025515494
AT2G04330_at 0.506525021075245 0.527975273200989 0.333426052766179 0.481144055600407 0.198487246301506 0.783798812143862 0.381759476258178 0.52287561383012 0.535133410066389 0.580950077332006 0.451420162910196 0.307640949540663 1.12133698125844 0.327799847268629 0.673158624853754 0.758777461062019 0.589957176597617 0.618522880240479 0.210385904373947 0.183908564818142 0.175407810592196 0.180755781138531 0.181222524194668 0.184323081607113 0.184831550170026 0.176670678190345 0.178246599313468 0.183717730656506 0.188724657688316 0.185679713307507 0.179465962748273 0.183497285132992 0.186124394216164 0.180568193383700 0.183822985400071 0.178083863421700 0.184155508092487 0.181564538756387 2 0|2 /|- 1510529 1510959 1510714.857 1510447 1513139 - gene protein_coding_gene FALSE TRUE AT2G04330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); similar to unnamed protein product [Asper (GB:BAE61223.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) 0.0641752460771084 0.617462829686899 0.549632845353051 1 -0.42059863529416 0.991115556092355 0.0641752460771084 0.107347485358358
AT2G03180_at 0.949034786631956 0.957864194353989 1.18766603125491 0.651178673030963 0.108463371019033 1.02870533060943 0.597415837121486 0.883769796285932 0.906450006161915 0.629791149789235 0.516363043759409 0.875699348925906 0.271609522776587 0.53322423161146 1.23437500445872 0.578614805592259 0.525225808435723 0.53384533222532 0.578945798457579 0.206989710088749 0.205341290767721 0.216352574168197 0.208045279996825 0.218791656334732 0.205341290767721 0.209521485280415 0.209024817560594 0.208550761817547 0.214690066811985 0.208708482010895 0.205565894866267 0.219798721645587 0.206956437299064 0.210032087644980 0.215417944060212 0.206816522333624 0.214705892250196 0.212063326167955 2 2 + 962815 963098 962945.455 962761 963123 + gene protein_coding_gene FALSE TRUE AT2G03180.1 unknown protein -0.0872302415164138 -0.617407953856731 0.54966772034831 1 -0.420631706213184 1.46485323021817 -0.0872302415164138 0.190889609570297
AT3G24160_at 10.5029171556546 10.8827336238572 10.7932665362625 11.0130676252544 11.1108072515987 10.6963504009975 11.1855551058699 11.3844918761046 10.5427899421415 10.9392469998623 11.0245888978268 10.9846838810698 11.2741527924261 10.8806717375278 10.7893370397621 10.9805608721572 10.6365812796476 10.9415090420534 10.6896898421346 0.0865107542768769 0.0854725126580431 0.0882189998505267 0.0871642708629276 0.0854725126580431 0.0897403477469739 0.0869419558618297 0.0854725126580431 0.0908328905282534 0.0891274098610595 0.0901928672405621 0.0871959172030403 0.0863714849996636 0.0895666592388417 0.0882373925102999 0.0854725126580431 0.0974580523172475 0.0894400764508991 0.0882432268341427 3 3|0 +|/ 8727545 8728773 8728313.556 8726129 8729396 + gene protein_coding_gene FALSE TRUE AT3G24160.1 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) Encodes a putative Type 1 membrane protein (PMP). similar to type 1 membrane protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD10349.1); similar to Os08g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062545.1) 0.0647751389597173 0.617243848137337 0.549772021172745 1 -0.420730588262808 21.7776085073774 0.0647751389597173 0.109984835125577
AT3G62880_at 7.10806562544393 6.82427223395499 6.63369334574485 6.7250340535273 7.3390088947971 7.06346276263386 6.44546607541017 6.79045436157718 5.74894740829509 5.9515939921477 5.50242873080913 5.75099772594829 5.83333985854375 5.90611501688044 5.38241434759604 5.62179217838086 5.98337941228883 5.618711891887 6.20818178666219 0.221382782404744 0.214888630465595 0.222095149267290 0.217294064107599 0.213944532974678 0.233459278476282 0.212969820648447 0.218347309984034 0.215069820153711 0.220058496756413 0.211616174086134 0.209686188189457 0.211030616353159 0.213536670870384 0.215471322394258 0.210749388939079 0.214152364629167 0.219051687038148 0.212538472502787 3 3|0 -|/ 23256119 23256952 23256501.556 23255637 23257030 - gene protein_coding_gene FALSE TRUE AT3G62880.1|AT3G62880.2 ATOEP16-4; protein translocase Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. similar to OEP16 (OUTER ENVELOPE PROTEIN 16), protein translocase [Arabidopsis thaliana] (TAIR:AT2G28900.1); similar to Mitochondrial import inner membrane translocase, subunit Tim17/22 [Medicago truncatula] (GB:ABE84978.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) -0.0607209051653275 -0.616821466321402 0.550040526036225 1 -0.420984982698355 12.7009180646329 -0.0607209051653275 0.092195170989829
AT3G05370_at 5.35694743007929 5.48778635824206 5.80203002047211 5.40714976702144 6.05524148795185 5.63767890957836 5.43954197677906 4.76307757712993 4.8644723869974 5.64165847032114 5.13169976196209 5.46500093110421 5.0433907807603 5.30173510667509 4.97284809191835 5.99555280594497 5.4096580085597 4.66473268408962 6.16956059945616 0.194226359619138 0.185723874293014 0.188810302452556 0.187522226418742 0.18861521923844 0.190223486979653 0.188659482591348 0.188164462490546 0.200285955724129 0.193045105319606 0.192629229761152 0.188077820724359 0.190868388922811 0.192079289103407 0.190229230186885 0.186082424747173 0.193003550829180 0.188669553370604 0.195479305933957 3 3 - 1536153 1536627 1536406.273 1536020 1538725 - gene protein_coding_gene FALSE TRUE AT3G05370.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71390.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G05360.1); similar to Hcr2-p3 [Lycopersicon pimpinellifolium] (GB:AAX19025.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0766000815751222 0.616689287848151 0.550124566037363 1 -0.421064558697647 10.8970022360576 0.0766000815751222 0.155268886827501
AT4G11160_at 7.335782738394 7.28836047037602 7.42570519078417 7.55030546741663 7.72393097329258 7.62346417173413 7.44405746039631 7.34629608638561 6.79230346241718 6.72442638947916 6.41860370447674 6.29414210452014 6.58058395960006 6.83851088038851 6.63471462679452 6.89986546812613 6.63691169375865 6.7669851834798 6.75762786387489 0.205055268501094 0.198210758755811 0.211747046246321 0.210091628254644 0.209732407755196 0.214171987590805 0.205922628148263 0.199579695219948 0.209745204007378 0.205200717287047 0.196621404215299 0.206576114586076 0.211011491406224 0.212202505893148 0.198204227203924 0.197145984692494 0.204937966551401 0.206889732923354 0.200194010854906 4 4|0 +|/ 6806046 6806535 6806263.6 6803590 6806871 + gene protein_coding_gene FALSE TRUE AT4G11160.1 translation initiation factor IF-2, mitochondrial, putative similar to translation initiation factor IF-2, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G17220.1); similar to Os09g0515500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063668.1); similar to translation initiation factor IF-2 [Gluconobacter oxydans 621H] (GB:YP_191979.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.0514488629857766 0.61589523200481 0.55062958441812 1 -0.421542274764577 14.1631922904642 0.0514488629857766 0.0334783471846932
AT4G39410_at 3.37185482116665 3.66575440355001 3.64287033926161 3.35347670026542 3.48032384080733 3.5332077073358 2.96214513958626 3.40695079303428 3.41173008004065 3.34082541476819 3.39680161707647 3.51566720385009 3.64681459499919 3.67415667445092 3.40322576221603 3.37067073079045 3.01996828776076 3.77801727811348 3.74552403237826 0.199848311041142 0.205940244695442 0.203384738172737 0.201785807179679 0.199848311041142 0.203640306279227 0.201625654412454 0.199848311041142 0.200191333858290 0.201806281847127 0.201484387289651 0.205871601970486 0.202882232174340 0.216068850727155 0.210519183641821 0.200602805592748 0.207077130276037 0.200820069920075 0.203415337694381 4 4|0 -|/ 18333003 18334430 18334018.125 18332872 18334783 - gene protein_coding_gene FALSE TRUE AT4G39410.1 WRKY13 (WRKY DNA-binding protein 13); transcription factor member of WRKY Transcription Factor; Group II-c Identical to Probable WRKY transcription factor 13 (WRKY DNA-binding protein 13) (WRKY13) [Arabidopsis Thaliana] (GB:Q9SVB7); similar to WRKY family transcription factor [Arabidopsis thaliana] (TAIR:AT2G44745.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABE81683.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.0635493919223579 0.615853559652799 0.550656095174757 1 -0.421567329717975 6.91458552365236 0.0635493919223579 0.105375145539036
AT4G03160_at 0.95506467533813 1.2969960185852 1.56607035757311 1.66715011047808 0.979294966643014 1.35689938788012 1.09460299565280 1.24239641347663 1.73899814548961 1.31140585569780 0.794219271828183 1.18418673286513 0.926611420351968 1.03765978602919 1.07832542943971 1.12780404256862 1.22311021769029 1.5610929876211 1.40007707003657 0.194986461937688 0.192657399316896 0.192594855931789 0.196040920228265 0.188693841592257 0.188997184735781 0.192756960495742 0.187009836908523 0.192326640649544 0.192050451005060 0.186112079751355 0.188309338608781 0.196386193328211 0.186112079751355 0.194223210003106 0.190620255401024 0.191941821572101 0.186112079751355 0.186112079751355 4 4 + 1397983 1398614 1398353 1397979 1398685 + gene protein_coding_gene FALSE TRUE AT4G03160.1 similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G03170.1); contains domain Homing endonucleases (SSF55608) -0.0608893872391628 -0.61583216720489 0.550669704716184 1 -0.421580191034992 2.56986932893202 -0.0608893872391628 0.0934434538538886
AT1G29850_at 10.0180696202354 10.0470618880970 10.4413196694029 10.2532633172757 10.5136663448173 10.0143814906005 10.5250853186551 10.1529922098666 10.2565862497095 10.2672012790922 10.3604605391707 10.2026426698187 10.208574503603 10.2244759504300 10.0328064581124 10.3103966179228 10.2878642703079 10.3535100840160 10.1870143073696 0.0861322265591128 0.0881855180000262 0.0913401417053748 0.0946767248434224 0.0902064623785091 0.087459776792602 0.0868195056685432 0.0867160398807563 0.0916880451039652 0.0875813950326754 0.0917942092286383 0.0861586316861215 0.0885305894043611 0.0883902734361965 0.0894150703915962 0.0861322265591128 0.0940112769190216 0.0885870183236931 0.0884585061306255 1 0|1 /|+ 10448706 10449432 10449118.714 10447738 10449930 + gene protein_coding_gene FALSE TRUE AT1G29850.1|AT1G29850.2 double-stranded DNA-binding family protein similar to cell death-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAT42243.1); contains InterPro domain DNA-binding TFAR19-related protein; (InterPro:IPR002836) 0.0652564437964265 0.615699411972036 0.550754165752617 1 -0.421659995315673 20.4879926484004 0.0652564437964265 0.112677643194560
AT2G10920_at 4.43408550807907 4.19143926774619 4.37464009310213 4.16380192327490 3.90082513441379 4.33643876949957 3.98535090427495 4.05364266777709 4.17201008636151 4.32412974808279 4.39694248128152 4.25589312869195 4.14156210885938 4.64325649499064 4.54627001331679 4.08533355902907 4.656479595986 4.54689684393813 4.44801430435801 0.175002792909632 0.170215170384842 0.170463113006376 0.173647336661787 0.174040816479235 0.170538167527928 0.179667783340504 0.179263385530862 0.179195513005727 0.183531108036173 0.178583703050676 0.172075504678207 0.177170166040753 0.173135001342902 0.175397485530885 0.170611878438560 0.180292198142521 0.175469307085076 0.187354481569381 2 2 - 4308965 4309104 4309020.727 4308965 4309216 - gene protein_coding_gene FALSE TRUE AT2G10920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G03570.1) 0.0610790625487614 0.615608337006805 0.550812113338525 1 -0.421714734752585 8.54192669578552 0.0610790625487614 0.0944302923311744
AT4G31600_at 5.48903534393476 6.17256472816723 5.57550731568286 5.72868742683662 4.81538773031536 5.06220753109241 4.46950439264646 4.8502828943944 4.1489583565508 3.78508422802324 3.96208361730808 4.76129910407114 3.84755937412164 4.06533851808383 4.15079907398922 3.73618677138244 4.15564708742732 4.19386109862051 4.10333013586359 0.224616931836041 0.224804054429640 0.227644918825149 0.235460307357955 0.221727079527965 0.232150234056727 0.225012984507636 0.221727079527965 0.238045456495918 0.2265219498113 0.223990517656555 0.230455832500975 0.223723480179784 0.228403465333539 0.227959735748434 0.223709526354893 0.229224909854696 0.226296560975947 0.221727079527965 4 4|0 -|/ 15315345 15316061 15315751.4 15314890 15317141 - gene protein_coding_gene FALSE TRUE AT4G31600.1|AT4G31600.2 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32272.1); similar to Os06g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057020.1); similar to hypothetical protein DDBDRAFT_0202972 [Dictyostelium discoideum AX4] (GB:XP_643057.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32272.1); similar to Os06g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057020.1); similar to hypothetical protein DDBDRAFT_0202972 [Dictyostelium discoideum AX4] (GB:XP_643057.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.0733699591712075 0.61495119574417 0.551230329277915 1 -0.422109478401367 9.33117437243613 0.0733699591712075 0.144434707536743
AT3G20820_at 10.5025752220781 10.8523987599911 10.1805149352366 10.2364157849509 10.8335243379795 10.5773644898300 11.6521431734650 11.7876946189826 10.7459886588976 10.9898588049445 11.5848664756923 11.911450739107 11.7488821944002 11.6218949185677 11.5987685296419 11.7437526127922 11.2190678239080 11.5369332295241 11.2484807541901 0.0922926107792994 0.0910975194099282 0.0944081531344695 0.0946435624057717 0.0906125682795822 0.0991281561432334 0.0900123801455858 0.08941557716458 0.100675571465262 0.0918102133587668 0.0924457872087627 0.0892209020318247 0.0911497727540044 0.0916612607566265 0.0919117238023694 0.0892209020318247 0.098278614226977 0.0928500355766862 0.0912091368680835 3 3 + 7281448 7281956 7281714.636 7280884 7282183 + gene protein_coding_gene FALSE TRUE AT3G20820.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G12940.1); similar to polygalacturonase inhibitor-like protein [Cicer arietinum] (GB:CAD56505.1); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.057911031926595 -0.614808557127464 0.551321130498105 1 -0.422195109511679 22.1355679843800 -0.057911031926595 0.0792079107627216
AT1G27550_at 1.08214827525458 1.22425503637517 0.593211358951137 0.683320935808107 1.14352620506628 1.1600356777135 1.03118610064351 1.12933374291966 1.27507392426668 1.00427686174743 1.26604827805052 0.823302668146094 1.21118899948460 1.22271039056636 1.32975022461560 0.97223104349052 1.32393767387067 1.6545239314868 1.04022047810095 0.191081450920567 0.196286679360302 0.192098916056507 0.187949991617553 0.193479623896399 0.194135557858929 0.193888946013561 0.198374846911295 0.200261006068700 0.189910075742943 0.192267458033070 0.191646732512979 0.193821664642777 0.191116353507240 0.193763311724098 0.195613492182121 0.187949991617553 0.194745905239647 0.187949991617553 1 1|0 -|/ 9568875 9569292 9569135.1 9568800 9569317 - gene protein_coding_gene FALSE TRUE AT1G27550.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G27580.1) -0.0513846739522985 -0.614741608643794 0.551363751616222 1 -0.422235294747494 2.17186986955095 -0.0513846739522985 0.033831894558769
AT2G35530_at 4.23087681180462 3.58945901306288 3.87038513684072 3.75599297954192 4.52798233665192 3.65293977198071 4.33224986346424 3.75312519492536 3.21803463050786 3.51463316407236 3.50266852217178 3.48072212257945 3.32792978960461 3.02420118804242 3.41786558404631 2.93178458914805 3.14105130690782 3.39811122517203 3.59139990737759 0.208833973074772 0.208833973074772 0.214129582839532 0.218588528043721 0.218947533467777 0.221904278341944 0.214537844447722 0.216409788434325 0.213271972858893 0.219540487460472 0.21521988130036 0.208833973074772 0.208833973074772 0.213698595732115 0.214436525684647 0.210920260475089 0.221497809062546 0.225122015573294 0.213984746229831 2 2 - 14930572 14931142 14930914.7 14930041 14933670 - gene protein_coding_gene FALSE TRUE AT2G35530.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G32150.1); similar to bZIP transcription factor 3 [Phaseolus vulgaris] (GB:AAK39131.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.0939583871270018 -0.614731470314615 0.551370206097433 1 -0.422241379836009 7.32382523433987 -0.0939583871270018 0.213747887073768
AT1G69400_at 1.75584414033355 2.17863465098797 2.03282482712836 2.42648301048015 2.10204588541623 2.18495637291473 2.32554844391131 2.04930539696633 2.56316327570766 2.42353007522458 2.58984667364875 2.52639101801231 2.05648946609969 2.19746575280806 2.53203073280245 2.15534899483595 2.18972328116642 2.35358259782981 2.70545096843386 0.202042088790673 0.210501826948150 0.211980449719501 0.205737029534652 0.208403341620387 0.216123953480486 0.204031777058829 0.207670288443618 0.211128066915406 0.203813497050741 0.202042088790673 0.203912037961262 0.2072427170403 0.202042088790673 0.205063120731821 0.202042088790673 0.224407470417446 0.212599083164353 0.202042088790673 1 1|0 +|/ 26091419 26092436 26091880.8 26090611 26092683 + gene protein_coding_gene FALSE TRUE AT1G69400.1|AT1G69400.2 transducin family protein / WD-40 repeat family protein similar to WD-40 repeat family protein / mitotic checkpoint protein, putative [Arabidopsis thaliana] (TAIR:AT3G19590.1); similar to putative mitotic checkpoint protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57743.1); similar to Os03g0448600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050471.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046)|similar to WD-40 repeat family protein / mitotic checkpoint protein, putative [Arabidopsis thaliana] (TAIR:AT1G49910.1); similar to putative mitotic checkpoint protein [Oryza sativa (japonica cultivar-group)] (GB:BAC57743.1); similar to Os03g0448600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050471.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0648469629349279 -0.613958024011181 0.551862739241632 1 -0.422705332592065 4.57653430157023 -0.0648469629349279 0.111737974023545
AT1G62350_at 1.46327485909732 1.75389265513000 1.46746577960366 1.84761908681575 1.34853662934003 1.12894118104396 1.98754665513889 1.37161596954785 1.07043716202605 1.17545578162505 1.29766489367323 1.38998717539537 1.31136124224266 1.07516187870953 1.39238319878801 1.35963674197310 1.20873770596528 1.58130217874774 1.57992209430508 0.242100881640838 0.244619658970468 0.243627927376010 0.252631256467055 0.240255996745026 0.253159834585171 0.248295145984921 0.249430734140703 0.252980745552918 0.246441614274821 0.239752326208808 0.245870764684453 0.251984615533745 0.258330775294839 0.252105964821669 0.244346951100242 0.240046375606722 0.249336405465119 0.240929487736165 1 1 + 23060418 23061523 23061115.3 23060318 23061600 + gene protein_coding_gene FALSE TRUE AT1G62350.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G46870.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95454.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.0720920839547614 -0.613814617595778 0.55195408805471 1 -0.42279129554536 2.84726213009248 -0.0720920839547614 0.140224263489052
AT2G41940_at 8.49266425442747 8.8756376733714 8.5291077162601 8.68326423069221 8.88848549474527 8.63116255693757 8.45212641717297 8.68722088078758 8.77643681675203 8.40609334497062 8.6211973627873 8.45151167218916 8.55816953488015 8.47307822110276 8.30227913979201 8.58838670162945 8.35653528254298 8.41656783456433 8.76262737305387 0.143621795269605 0.13874475586495 0.143157368852605 0.135350948535509 0.134645150365627 0.139179627637578 0.136849927328189 0.132757237524768 0.140453345650051 0.131916524484497 0.132824532527838 0.135204158618258 0.134019949195332 0.137116053354214 0.13829596195964 0.132273031592801 0.151669496072903 0.133069396527446 0.129727883239654 2 2 + 17514916 17515284 17515121.636 17514587 17515694 + gene protein_coding_gene FALSE TRUE AT2G41940.1 ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. similar to GIS (GLABROUS INFLORESCENCE STEMS), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G58070.1); similar to zinc finger protein (GB:AAA87304.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.060663716510279 -0.613427063359839 0.552200999656524 1 -0.423023516224171 17.2146344348551 -0.060663716510279 0.093500358936928
AT1G77720_at 1.68874078389916 1.89943384602604 1.62493951861001 1.38722097308728 2.03813902267956 2.25511840909821 2.22252354071357 2.58348309172155 1.74651207113126 2.12630984889354 2.46221062971018 2.48895120325039 2.62233203550104 1.93869145117863 2.02019975181641 2.2414295049691 2.39268943360299 2.32212815349364 2.60501285603242 0.183735147153203 0.183735147153203 0.189168245972337 0.186985592551802 0.189095503865252 0.187330651488733 0.192831439140117 0.187595436614221 0.189685468700297 0.186379001089628 0.186821118893326 0.187358110777499 0.188520614509412 0.190308849898754 0.183735147153203 0.184379230781907 0.184893498204768 0.193787580317643 0.184394442297633 1 1 + 29218202 29218721 29218501.091 29215415 29218981 + gene protein_coding_gene FALSE TRUE AT1G77720.1 protein kinase family protein similar to MAPKKK10 (Mitogen-activated protein kinase kinase kinase 10), kinase [Arabidopsis thaliana] (TAIR:AT4G08470.1); similar to Os03g0704400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051023.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM97166.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.06019503648338 -0.613416706488867 0.552207598890463 1 -0.423029720145133 4.19762853779244 -0.06019503648338 0.0912891687687793
AT2G41930_at 3.3103209089961 3.44175629527057 3.60801299782495 3.32215088069165 2.91751751758462 3.66865766891818 3.1829953912983 3.94992971358168 3.50378235363405 3.25156582988906 3.82448502949035 3.35587233572059 3.56804862250472 3.35296538376913 3.39415088248989 3.32212039159649 3.82358064193336 3.88218262781279 3.13969033936516 0.206728012916005 0.202740824415743 0.215789455525826 0.202740824415743 0.206754835843720 0.215099052467872 0.209282167224588 0.203806311864157 0.208218831228057 0.209291294700929 0.207415103915864 0.203003776488104 0.212809587129866 0.208213904032227 0.205134684899901 0.211728335434374 0.205053110174585 0.20928704708635 0.206598414043859 2 2 + 17509253 17509654 17509473.818 17508708 17509762 + gene protein_coding_gene FALSE TRUE AT2G41930.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G42550.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93553.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0874568770433795 0.613180489163584 0.552358124836824 1 -0.423171191467826 6.85705362862613 0.0874568770433795 0.193588711178811
AT2G27590_at 5.3529204125392 5.78785713347548 4.90989890219178 4.90063698355403 4.99866109971393 5.22970193018029 4.13318968633493 4.85599437988636 4.27759053477045 3.63509976968424 3.75485583971676 4.22399866808676 3.80257413846620 4.40097254994622 3.80537333535811 3.75206224282938 3.54788639772196 4.12747873839744 4.24987534215536 0.242380823415629 0.237027070381658 0.231262465277459 0.23053376354052 0.231786113485280 0.24128094554963 0.233498322640993 0.232741599585754 0.234467055729999 0.231184461173822 0.233265654339726 0.230889750468024 0.231979622051125 0.231260775871713 0.23581414970197 0.232200620559362 0.242125174564077 0.230616724550329 0.235333425778303 2 2|0 -|/ 11784848 11785953 11785513.8 11784631 11786928 - gene protein_coding_gene FALSE TRUE AT2G27590.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93200.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) -0.075026992101825 -0.612817988588021 0.552589167644171 1 -0.423388195873432 9.01165195982718 -0.075026992101825 0.1513691471503
AT2G31710_at 5.91252328894528 6.29127365913785 5.43885614889745 5.591703756497 6.36464838309786 5.94836746896953 6.41988521747334 5.65329989744486 4.71885004136712 5.05507996094486 5.45784834276957 5.72771617538808 5.14431847842969 5.415169776591 5.28755841791511 5.11347924843049 4.85654094505766 5.21079135219815 4.87995599930558 0.233049713765687 0.240755373346544 0.233398408720991 0.235422320155458 0.234194663755952 0.240458941333155 0.236768241836036 0.231540350904102 0.258091823295170 0.23409884771487 0.229096528272807 0.229684048934293 0.247160917052812 0.235924677116168 0.246043120372774 0.229096528272807 0.242121531431778 0.250274969722408 0.237329471096172 2 2|0 -|/ 13489140 13489933 13489372.2 13488870 13490201 - gene protein_coding_gene FALSE TRUE AT2G31710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05780.1); similar to Os04g0612900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053850.1) 0.0793487992533728 0.61255606547481 0.552756140272407 1 -0.423544917269659 11.0332229822096 0.0793487992533728 0.166686507885412
AT1G66490_at 0.290301776594012 0.679338032622074 1.07853547546325 0.954701257724243 0.532024212991288 0.98766096710743 0.489535312041634 1.03686477139442 0.746224636022087 0.832224810202433 0.218622197808532 0.50800670352719 0.375575907385011 0.609058667624468 -0.0109823882050093 0.536869425990517 0.370281443513912 0.818720631538617 0.933625292983252 0.192236264782342 0.202338688165381 0.192437892679301 0.200014706907231 0.196187893853698 0.195089851923106 0.193100277299710 0.190500777064712 0.212042842534607 0.194253989420677 0.190428478614264 0.193971079792634 0.191860637944849 0.194099424787879 0.19533722915553 0.191602425462167 0.196339065739653 0.196885878318554 0.202404444837513 1 1 - 24813107 24813485 24813304.636 24813084 24814212 - gene protein_coding_gene FALSE TRUE AT1G66490.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G13680.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0724343337980839 -0.612516943057212 0.55278108273985 1 -0.423568320784761 1.38893388576754 -0.0724343337980839 0.142058644670053
AT1G12630_at 4.12732841699105 3.69787067663528 3.7397732500706 4.06809901642685 3.67653288721280 4.15179638524906 4.11514991001179 3.6307087363507 4.22530827311071 4.16852541153638 4.1138918971306 3.98804042062669 4.13888909865263 3.84555393474108 4.10417365892848 4.26675920016398 4.06043124766547 4.04055780799459 4.31225332521503 0.239680914369391 0.239680914369391 0.253886927859605 0.247413102076801 0.246972294097446 0.246012372955014 0.246463356621937 0.249702593776808 0.253775614848494 0.245571647997039 0.239680914369391 0.239680914369391 0.240230335793188 0.244553607009120 0.239680914369391 0.242708525312549 0.247436091092866 0.247282188782577 0.246147988576552 1 1 + 4298908 4299396 4299159.909 4298887 4299473 + gene protein_coding_gene FALSE TRUE AT1G12630.1 DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G52020.1); similar to DRE-binding protein 3a [Gossypium hirsutum] (GB:ABB45860.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.0746446143200723 -0.612465712256297 0.552813745851811 1 -0.423598965586456 8.05348215729784 -0.0746446143200723 0.150148274228430
AT2G46580_at 7.20929355759641 6.84914197342613 7.16131242019886 7.13857413698884 7.99494697777618 7.36546317303616 7.409380564012 6.84378070415183 7.07566800134583 7.20221585346709 7.436602297645 7.14673732850956 6.48267814772039 7.11504655733297 6.98275878472418 7.05725226434628 6.99933362093237 7.06256941851885 7.37669576702868 0.203388298305582 0.192774442786179 0.205494014919264 0.207590757349318 0.19367900752548 0.197261749615516 0.204501880572446 0.190803426394051 0.200911955951184 0.211015474296906 0.197929182717894 0.197344495859418 0.194759206057967 0.197969262181075 0.195007229869731 0.193643736306899 0.215455183540921 0.202473422748976 0.193554162628383 2 2|0 -|/ 19136534 19137514 19137044.4 19136313 19137667 - gene protein_coding_gene FALSE TRUE AT2G46580.1 pyridoxine 5'-phosphate oxidase-related similar to hypothetical protein alr4036 [Nostoc sp. PCC 7120] (GB:NP_488076.1); similar to Os03g0115500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048753.1); contains InterPro domain Pyridoxamine 5' (InterPro:IPR000659); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002); contains InterPro domain Pyridoxamine 5-phosphate oxidase, FMN-binding; (InterPro:IPR012349) 0.0771770361945432 0.612362118182268 0.552879797408964 1 -0.423660925331339 14.3732694432717 0.0771770361945432 0.159208339597398
AT1G27160_at 1.46616457008189 1.67049100972436 1.48321404979565 1.68147594571715 1.73020276686319 1.5387420750132 1.76817137410838 1.79226625354806 1.40223204337942 2.05825921621762 1.76698768732153 1.74993344680219 1.4921066634248 1.55031449445658 1.49949098807062 1.67203019458751 1.87696173626644 1.85929895375146 1.71799414692011 0.176288785351710 0.180404762947751 0.176533857397096 0.185049614590569 0.177769702715395 0.176288785351710 0.179877035174521 0.179723650959003 0.187035415571334 0.191336827301578 0.182459868724539 0.181627483488078 0.176288785351710 0.184888590844406 0.180642873004494 0.180309645794131 0.181767715741192 0.177606232443436 0.176977604185745 1 1 + 9432591 9433033 9432827.818 9432405 9433177 + gene protein_coding_gene FALSE TRUE AT1G27160.1 valyl-tRNA synthetase / valine--tRNA ligase-related similar to TWN2 (TWIN 2), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G14610.1); similar to Valyl-tRNA synthetase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAP54522.1); similar to Os03g0694900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050973.1); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080) -0.054317937052808 -0.612349788515954 0.552887659095836 1 -0.423668299072174 3.34611716698525 -0.054317937052808 0.0595204486062228
AT2G37140_at 1.46008699815224 1.57606113738206 1.5470997551026 1.87706731377107 1.71100653579555 1.54117795362697 1.56809454392518 1.83233025343670 1.89137191407221 1.56995335024932 1.49169489863511 1.27593788702243 1.76552588200296 1.45844841626532 1.51123537817777 1.42079030523718 1.86426709926916 1.53047413088474 1.68637687563017 0.182867581834937 0.180892898266127 0.185746297889573 0.188766248940911 0.186084460599334 0.181852036563701 0.18625292531103 0.180892898266127 0.185482117720450 0.184401187671287 0.187090775892786 0.182085528928785 0.191130719080316 0.181333562216417 0.185603472960201 0.183880531279488 0.180892898266127 0.194784691856592 0.185808218352626 2 2 + 15609952 15610380 15610170.545 15609942 15610408 + gene protein_coding_gene FALSE TRUE AT2G37140.1 terpene synthase/cyclase-related similar to ATTS1 (Arabidopsis thaliana terpene synthase 1), lyase/ magnesium ion binding [Arabidopsis thaliana] (TAIR:AT4G15870.1); similar to terpene synthase [Citrus junos] (GB:AAG01339.1); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630) -0.0580796536401997 -0.612246962632608 0.552953225751129 1 -0.423729788589211 3.26696429290108 -0.0580796536401997 0.0813524154980808
AT1G68890_at 2.67586944178542 2.59357751471538 2.45136901135107 2.06866304163681 2.89282148626060 2.74419243987074 3.16864211505277 3.22505383171303 2.08325358277013 1.87599079720170 2.31938603057521 2.22470312830733 2.83135341531739 2.33440802970621 2.18314056665872 2.44079861031775 2.55513066475461 2.08064988092516 1.68547019274627 0.211773645494337 0.217702824142209 0.214158949597291 0.222173580125651 0.227849306776400 0.215913842659068 0.220312743478871 0.211334410601208 0.215028661728172 0.212887360032824 0.211334410601208 0.216003579542896 0.212717317434673 0.221841242667963 0.21455393491344 0.213805630255719 0.213197791705151 0.215188087211204 0.218701575707368 1 1|0 +|/ 25905211 25906056 25905629.1 25900608 25910373 + gene protein_coding_gene FALSE TRUE AT1G68890.1 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Homologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis. similar to ICS2, isochorismate synthase [Arabidopsis thaliana] (TAIR:AT1G18870.1); similar to Isochorismate synthase (ISS) [Ostreococcus tauri] (GB:CAL57971.1); contains InterPro domain Mandelate racemase/muconate lactonizing enzyme, C-terminal; (InterPro:IPR013342); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP binding region; (InterPro:IPR012001); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Menaquinone biosynthesis protein; (InterPro:IPR004433); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain O-succinylbenzoic acid (OSB) synthetase, gamma proteobacteria and archaea; (InterPro:IPR010196) 0.0565502677720459 0.612246864006896 0.552953288641647 1 -0.423729847562438 4.85390751782806 0.0565502677720459 0.0731160963385795
AT1G77390_at 1.06455398159200 1.13430752117859 0.511552269327859 1.11201140300148 0.978879522396782 1.26951761116418 0.997199115098362 0.478792367218038 0.77718478020743 1.00473964044854 1.49537963208530 0.980503293739757 0.894076462036358 0.770239212463126 1.08089422487906 1.28112989100544 1.09042825433848 1.34980178664238 1.27768330230435 0.241533924565749 0.237430480332353 0.233393424608289 0.231702844233968 0.235544751802839 0.238048696926049 0.234977740865416 0.236783054071347 0.230494960409474 0.233766351257972 0.239146920655432 0.234048220572127 0.236483566467807 0.239122670058109 0.23365656018156 0.234013467705479 0.238835335639342 0.244389029678858 0.230494960409474 1 1|0 -|/ 29087193 29087744 29087370.625 29086798 29089179 - gene protein_coding_gene FALSE TRUE AT1G77390.1 CYCA1;2 (CYCLIN A1;2); cyclin-dependent protein kinase regulator core cell cycle genes similar to CYCA1,1 (CYCLIN A1,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT1G44110.1); similar to cyclin A [Scutellaria baicalensis] (GB:BAE06271.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.073607154431396 0.611746602805446 0.553272341064628 1 -0.424028865170443 2.01218964168992 0.073607154431396 0.146702265425131
AT3G15730_at 10.5396052848301 10.6432137155975 10.4036791285473 10.4205816836464 10.6679581507417 10.4177849527542 10.3115642712236 10.4342805577428 10.1995296277725 10.2220448956634 10.2824151681710 10.3699452195513 10.3826603497679 10.2416040848652 10.0882369424924 10.3725428225966 10.1664300995243 10.1318764357064 10.0092852450305 0.109128906030215 0.107031857260699 0.104897155570055 0.105837866361058 0.107116299547554 0.111962905863555 0.104253071588891 0.108460628729678 0.112723866035497 0.106386440250713 0.109687991577206 0.110204768665961 0.104253071588891 0.109619232528278 0.109027284919750 0.107480597450216 0.104253071588891 0.109807074428689 0.104955607692157 3 3 + 5332869 5333440 5333188.091 5330329 5333752 + gene protein_coding_gene FALSE TRUE AT3G15730.1 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D Encodes phospholipase D alpha 1. Positive regulator of abscisic acid (ABA) mediated stomatal movements. Identical to Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) (PLDALPHA1) [Arabidopsis Thaliana] (GB:Q38882;GB:Q944M4;GB:Q9LW06); similar to PLDALPHA3 (PHOSPHLIPASE D ALPHA 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT5G25370.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to PLDALPHA2 (PHOSPHLIPASE D ALPHA 2), phospholipase D [Arabidopsis thaliana] (TAIR:AT1G52570.1); similar to Phospholipase D alpha 1 precursor (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (GB:O82549); similar to phospholipase D (GB:AAC49274.1); similar to Phospholipase D alpha 2 precursor (PLD 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) (GB:P55939); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.053089494543074 0.611305924739648 0.553553478453104 1 -0.424292080547436 20.6788753747137 0.053089494543074 0.0515302973059292
AT4G01840_at 4.32347038402573 4.41513113677267 4.25641273001103 4.64059778945288 4.74893302372238 4.38898274433990 4.00647633291803 4.65097286607593 4.84856791101804 4.61268525537674 4.72935275570617 4.29432558817728 4.61619778486166 4.8020687421489 4.15750057822922 4.86602244300034 4.50152419626061 4.62800469965797 4.30272938061997 0.168219925371497 0.168013369658728 0.168273651864851 0.168860904093498 0.167692120946893 0.176163812541302 0.163112158974980 0.160867554083220 0.172090022847833 0.167196147755552 0.175813784225536 0.168403043600117 0.167571882561287 0.164088547684644 0.167098653624840 0.163338419604716 0.168048590954205 0.164567677287236 0.165513542212028 4 4 + 794031 794376 794214.727 793261 795139 + gene protein_coding_gene FALSE TRUE AT4G01840.1 KCO5 (Ca2+ activated outward rectifying K+ channel 5); outward rectifier potassium channel Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. Identical to Probable calcium-activated outward-rectifying potassium channel 5, chloroplast precursor (AtKCO5) (KCO5) [Arabidopsis Thaliana] (GB:Q9S6Z8); similar to KCO6 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6), outward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT4G18160.1); similar to putative outward-rectifying potassium channel KCO1 [Oryza sativa (japonica cultivar-group)] (GB:BAD33183.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain K+ channel, two pore; (InterPro:IPR003280); contains InterPro domain Ion transport 2, bacterial; (InterPro:IPR013099) 0.0730496540502393 0.611239007117255 0.553596176579181 1 -0.424332034791355 9.01005651633658 0.0730496540502393 0.144885085043037
AT2G34740_at 1.53231988562429 1.68553881310056 1.86716159997692 1.57668534172766 1.30874273414102 1.71319313977736 1.86296749895049 1.40817580795208 2.35359019863597 1.67487581734919 2.20923404184654 1.91510659023471 1.90314797598539 1.93042865208571 2.45195247051923 2.15503740799732 2.51249127562442 2.1210457167598 2.00488420675848 0.229668208761996 0.225264077372729 0.235039253310637 0.232728644072723 0.228025994097174 0.236258170830981 0.234472394113144 0.225264077372729 0.232019109095243 0.226992936940243 0.227731762930334 0.229815636797848 0.232316960776905 0.227268479191545 0.233376338593926 0.230481373943828 0.22780972536355 0.235772591802177 0.231843954457923 2 0|2 /|+ 14666668 14667343 14666950.778 14666400 14667384 + gene protein_coding_gene FALSE TRUE AT2G34740.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G28400.1); similar to protein phosphatase type 2C [Lotus japonicus] (GB:AAD17805.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0664419889829911 0.61083571091901 0.553853546812201 1 -0.424572743270617 3.69980923130439 0.0664419889829911 0.119679294272526
AT4G13380_at 2.62648709335189 2.54442401808767 2.6198780349353 2.64095842346492 2.51572413337495 2.33037932154627 2.24290530905312 2.72569319466978 2.59675772724511 2.81233553756959 2.70169124438624 2.88608050560647 2.96840099233707 2.53216656775314 2.49393380853996 2.71234858699627 2.47196107571199 2.85460847988274 3.03325438246604 0.145578493795082 0.146828329234019 0.149620432200904 0.146870808511208 0.145722258856863 0.145850372801736 0.148889635385015 0.147206973396527 0.151032875332683 0.145992236241466 0.148656051902469 0.147018123286143 0.145054977642854 0.145054977642854 0.147897029604413 0.152339000377167 0.153997638098353 0.154282600091020 0.150221539152835 4 4 + 7781839 7782490 7782217.364 7781778 7782549 + gene protein_coding_gene FALSE TRUE AT4G13380.1 MEE56 (maternal effect embryo arrest 56); metal ion binding similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G57780.1); similar to PREDICTED: similar to CG32580-PA [Tribolium castaneum] (GB:XP_968002.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.0598047001177148 -0.610717326663338 0.553929108420965 1 -0.424643373236447 5.28918858609981 -0.0598047001177148 0.0906871782103267
AT3G11350_at 1.20495854225427 0.979479578747165 1.38495981606800 0.999918562813823 1.06947882847907 1.58650291829268 1.20033191735956 1.25964721181136 1.46680714516461 1.06116168424038 1.32681328802132 1.58203324638484 1.36944578140198 1.22452847207317 1.40667231970128 1.36852682922731 1.64494760175946 1.15014471674761 1.52495440454326 0.184077340166266 0.184132870550456 0.197909496534291 0.184935525123306 0.188070256053991 0.191016572446790 0.190194393047502 0.183723621462281 0.193658491771209 0.187838491503821 0.182761624348704 0.190066200365971 0.184857504484978 0.199049295057318 0.184433215403810 0.184944370812807 0.194711147252136 0.195806699910134 0.190321899073784 3 3 + 3559120 3559975 3559475.091 3558501 3560084 + gene protein_coding_gene FALSE TRUE AT3G11350.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G11380.1); similar to Os10g0501000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064983.1); similar to putative leaf protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93695.1); similar to Os10g0501300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064985.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0661376697344202 0.610410598851565 0.554124911680227 1 -0.424826312870331 2.57821639359359 0.0661376697344202 0.118631432560662
AT3G23010_at 2.77612445195988 2.72571223887759 2.72544921452904 2.51863799618443 2.18234603105571 1.88769790366267 1.54776974116344 1.17987137070549 2.46174757589730 1.33765840894556 1.61748238399277 1.30708472215009 1.87843442934418 1.80781650836227 1.45773563898532 1.41155680123426 1.75620304988320 2.15775812444012 1.67971904120973 0.194631114648864 0.19897258764235 0.187056801940530 0.184107341840037 0.181105059131689 0.179612804108655 0.183061723922133 0.178264020142966 0.183146750927070 0.186660896915204 0.18175668466223 0.183021781305650 0.190965229075559 0.189936206334870 0.194071878262346 0.185972637326718 0.197027088620114 0.179702902086633 0.187060720868105 3 3 + 8176122 8176584 8176357.455 8174865 8176652 + gene protein_coding_gene FALSE TRUE AT3G23010.1 disease resistance family protein / LRR family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G23120.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G23110.1); similar to Cf-2.2 [Lycopersicon pimpinellifolium] (GB:AAC15780.1); similar to Cf-2.3 [Lycopersicon pimpinellifolium] (GB:AAX19021.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.0595236421480958 0.610352707218962 0.554161871818535 1 -0.424860831216753 3.94326810150889 0.0595236421480958 0.0895010549586202
AT1G15190_at 0.812494880528868 0.482964711602308 0.692922725737887 0.619700078087491 0.480488097459883 0.887836131615989 0.73011980755766 1.00057085185675 0.764101875291772 0.833854690109143 1.06604069613250 1.01101065104788 0.40474281581245 0.666906793946474 0.952682715519511 0.884555030930176 0.898103735934873 1.00108635525209 1.09930831776887 0.210290139992585 0.209356168001868 0.211268605749494 0.213532899230707 0.219271060327465 0.207791202612919 0.206901144298462 0.212982940690349 0.209254318480809 0.212612795015204 0.206901144298462 0.208223140294422 0.215158733300759 0.219371269125011 0.210459109586747 0.209701018451180 0.206901144298462 0.218802460465187 0.211383412346376 1 1 + 5227498 5227929 5227739.455 5227048 5228197 + gene protein_coding_gene FALSE TRUE AT1G15190.1 Identical to Fasciclin-like arabinogalactan protein 19 precursor (FLA19) [Arabidopsis Thaliana] (GB:Q5Q0H2;GB:Q9XI50); similar to FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT5G06920.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.0623739998645086 -0.610085867944773 0.554332249606385 1 -0.425019896943822 1.59325185741181 -0.0623739998645086 0.102822416967676
AT4G32750_at 4.41579873057723 5.01975028797347 3.96429683384016 4.14823492318392 5.44055746075396 5.10844658101449 4.74937078928924 4.95338680646108 4.3469706171927 4.54932641873335 4.32160579387913 4.5840881013351 4.40117157737793 4.6638327686262 4.05692800216558 4.84471806339888 4.14180332209484 4.07793398698856 4.31684814285171 0.234112382694485 0.232504422173729 0.241222214916844 0.228599307137831 0.228599307137831 0.234279676034046 0.230500956296001 0.229080594362835 0.249619400356743 0.244889161202897 0.240872061193866 0.233151851214257 0.228599307137831 0.240151681750559 0.239467366717363 0.228972188276331 0.246400127844794 0.229107766588648 0.233347484850796 4 4 - 15796432 15797744 15796855.455 15795990 15798259 - gene protein_coding_gene FALSE TRUE AT4G32750.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28285.1); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024) -0.0685321140765495 -0.60988585670707 0.554459976668147 1 -0.425139083402042 9.12042626575796 -0.0685321140765495 0.128400365425645
AT4G03080_at 8.48445950985182 8.59791656834997 8.86748657087122 8.64984636146822 8.70114982732104 8.54271765715727 8.44631786247563 8.49244915604844 8.68197129110934 8.27208316032453 8.71756147789976 8.29978349059602 8.61774144314201 8.65607321441847 8.26711316163514 8.29385772302493 8.12709813234508 8.61393489587116 8.63103313441413 0.140102461162877 0.142031994160013 0.142020052106854 0.145413207925622 0.140799603982918 0.144921773752233 0.147941410927225 0.152682123359589 0.162847127177446 0.14477002012245 0.145654370735955 0.143837024613271 0.142282542002974 0.153178380767838 0.156116493833950 0.146696137929558 0.165173388852891 0.151318468095679 0.143923759430053 4 4|0 -|/ 1359936 1361168 1360536.556 1359655 1365451 - gene protein_coding_gene FALSE TRUE AT4G03080.1 kelch repeat-containing serine/threonine phosphoesterase family protein Identical to Serine/threonine-protein phosphatase BSL1 (EC 3.1.3.16) (BSU1-like protein 1) (BSL1) [Arabidopsis Thaliana] (GB:Q8L7U5;GB:Q9ZTA4); similar to BSU1 (BRASSINOSTEROID INSENSITIVE 1 suppressor 1), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G03445.1); similar to kelch repeat-containing protein / serine/threonine phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G08420.1); similar to kelch repeat-containing serine/threonine phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT2G27210.1); similar to kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97885.1); similar to Os05g0144400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054625.1); similar to DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase [Medicago truncatula] (GB:ABE78157.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Kelch repeat; (InterPro:IPR006652); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0528986218867729 0.609641231479973 0.554616216562587 1 -0.425284805928546 17.0865469246842 0.0528986218867729 0.051181078074661
AT1G60130_at 1.61596824027826 1.70893977779307 1.52182253173258 1.49934333839884 1.60035839388882 1.64611849763755 1.56859032267545 1.44464018329923 1.85153021736875 1.52635791397456 1.94152990920615 1.60605567538806 1.65393313147354 1.89386339604924 1.95987878192783 1.76939458791838 1.70529408753158 2.05903454781540 1.73730571755035 0.188528419867884 0.185600034662296 0.184677589156597 0.191522342793430 0.188079109689066 0.186823562790509 0.1854438972487 0.184255431432672 0.195576045364266 0.187646161121204 0.187896203829549 0.184924348219055 0.189439421439259 0.183136610442804 0.191405915898358 0.184335790073037 0.183136610442804 0.188124762810729 0.183722596323055 1 1 + 22179319 22179954 22179631.455 22177844 22179986 + gene protein_coding_gene FALSE TRUE AT1G60130.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G60095.1); similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G60110.1); similar to jasmonate inducible protein [Brassica napus] (GB:CAA72271.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 0.0504672288844143 0.60936669344514 0.554791590793765 1 -0.425448282746822 3.34006647619381 0.0504672288844143 0.0282278867302276
AT3G04360_at 2.25255684258225 1.60209993870064 2.25781914387451 2.11286736607295 2.19974794908759 2.42655631095327 2.38327672981895 1.76095010807298 2.77384981210532 2.26280970771319 2.00102324950393 2.26867669321686 2.33697482133384 2.20261138853489 2.14438711235708 1.84587304800497 2.42189796869551 2.15536225788278 1.76165451734111 0.188521402199940 0.191884052368471 0.189132857034889 0.204842409835142 0.191134149870146 0.193406862940602 0.200431835654225 0.201866140152216 0.189600183448891 0.200736827167946 0.202137999647419 0.190137046793667 0.187371722871622 0.189564642001318 0.190591005933300 0.185095883018095 0.188210093356182 0.203407684629386 0.194770977974463 3 3 - 1157292 1157641 1157483.636 1157011 1158316 - gene protein_coding_gene FALSE TRUE AT3G04360.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04540.1); similar to C2 calcium/lipid-binding re (GB:ABE92950.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0777614630457024 0.609348429379701 0.554803258933667 1 -0.425459155866894 4.34358704689261 0.0777614630457024 0.162601195066844
AT4G04770_at 11.0333250735323 11.2092009045790 11.1825119251060 11.2027958863535 10.7708355732165 10.2995666065399 11.4224817762225 11.3725414152003 9.8852190017525 10.5143581270868 10.7033885410200 10.2884797559171 10.4237688278265 10.2971037302387 10.3519627324989 10.0867125249423 10.3754276268694 10.7051454385030 9.98010944356574 0.106796359733809 0.109976380537603 0.110276527493048 0.110502372433364 0.110522792976547 0.113151342404487 0.105108752955836 0.107088585751922 0.128994322426254 0.107157751658607 0.104193659267710 0.110784178004575 0.106061643545923 0.111349881739959 0.113351104618794 0.105327548731343 0.116762231811986 0.122252007988256 0.113371702544134 4 4 - 2428085 2428668 2428439.545 2427798 2429848 - gene protein_coding_gene FALSE TRUE AT4G04770.1 ATABC1 (ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1) Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast. Identical to Protein NAP1, chloroplast precursor (Non-intrinsic ABC protein 1) (Protein ABC1) (Protein LONG AFTER FAR-RED6) (Plastid sufB-like protein) (NAP1) [Arabidopsis Thaliana] (GB:Q9ZS97); similar to ATP-binding-cassette transporter, putative [Arabidopsis thaliana] (TAIR:AT5G44316.1); similar to ABC transporter subunit (ISS) [Ostreococcus tauri] (GB:CAL54755.1); similar to ABC transporter subunit [Thermosynechococcus elongatus BP-1] (GB:NP_681280.1); similar to non-intrinsic ABC protein [Nicotiana benthamiana] (GB:AAX36074.1); contains InterPro domain FeS assembly protein SufB; (InterPro:IPR010231); contains InterPro domain SufBD; (InterPro:IPR000825) -0.0590116690771483 -0.609187806885739 0.554905879765069 1 -0.425554765986959 21.3269378141081 -0.0590116690771483 0.0875479124013469
AT4G21150_at 9.12108575872309 9.28671397099599 8.90785320942424 9.1887324744475 8.8926054187161 8.24648669025037 8.2937904180268 8.69863431181877 7.98151317331681 7.34817016823113 7.60204948344146 8.22570974617736 7.5190183676151 7.81435460174823 8.11264937581376 7.58447861783559 7.44355717066526 7.57320168651648 7.31546753042044 0.223467604566781 0.220456189026131 0.240336625662220 0.220456189026131 0.222769964135758 0.228595346996789 0.226722507637380 0.220456189026131 0.231143814845294 0.225302387433703 0.223452453679529 0.222006176727934 0.233228833268279 0.228571741976063 0.224693229263023 0.227015355180469 0.249324107255152 0.235748301811873 0.220456189026131 4 4|0 +|/ 11282409 11283275 11282941.556 11278439 11283858 + gene protein_coding_gene FALSE TRUE AT4G21150.1 ribophorin II (RPN2) family protein similar to At4g21150 [Turritis glabra] (GB:ABF47539.1); similar to Os01g0911200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045159.1); contains InterPro domain Ribophorin II; (InterPro:IPR008814) 0.07242854527779 0.609159629684367 0.554923883117873 1 -0.425571535978019 16.4708682841584 0.07242854527779 0.143509575592505
AT3G26190_at 0.87755169044222 1.29396528488796 1.17514683662753 1.36042512242910 1.02494258176895 1.33582274360944 1.15956010323846 1.05398717842249 1.29393135550466 1.63540156931495 1.04828388329814 0.655618114641464 1.80805310267764 1.42979134437869 1.05750766359975 1.01991295750199 1.06547498527468 0.891436138958894 1.18628968179517 0.193043332041866 0.190891063662550 0.196104612836913 0.193490734279742 0.195856907603483 0.189683067587468 0.189683067587468 0.194400525890282 0.196737349320403 0.192708691756823 0.194031949459938 0.196570647384298 0.194884480072568 0.201800151199636 0.190551840744334 0.191662481160807 0.192907336294515 0.19561663354286 0.203762886796932 3 3 - 9584712 9585140 9584922 9584702 9586346 - gene protein_coding_gene FALSE TRUE AT3G26190.1 CYP71B21 (cytochrome P450, family 71, subfamily B, polypeptide 21); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B21 (EC 1.14.-.-) (CYP71B21) [Arabidopsis Thaliana] (GB:Q9LTM2); similar to CYP71B5 (CYTOCHROME P450 71B5), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G53280.1); similar to CYP71B38 (cytochrome P450, family 71, subfamily B, polypeptide 38), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G44250.1); similar to CYP71B22 (cytochrome P450, family 71, subfamily B, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26200.1); similar to Cytochrome P450 71B8 (GB:P58048); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0610230857762732 -0.6090231929988 0.555011061677197 1 -0.425652727673855 2.40711718067644 -0.0610230857762732 0.0972068923117008
AT2G38820_at 7.02733157598695 6.79039738739023 7.45000944477688 7.19899643710918 7.8453392411766 7.85472747953826 7.25827253892307 7.24349568596072 7.4768204259532 7.7056162084395 6.55489813170961 6.71100310213724 7.00773263035278 6.92179941814643 6.8571308018106 6.86411042605125 7.3032368764268 7.35239788366673 7.50347435326822 0.166575650541067 0.165527334852772 0.166595950602956 0.165715844970722 0.169805437687792 0.170119094712864 0.163438281539864 0.167270983798329 0.16828166195665 0.167937320390858 0.162478675186328 0.170829076630883 0.166110152481764 0.169354702393304 0.161942743359958 0.167560967912944 0.174194910072642 0.168436231395326 0.170426634580950 2 2 + 16229626 16230444 16230155.364 16228914 16230740 + gene protein_coding_gene FALSE TRUE AT2G38820.1|AT2G38820.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22970.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44687.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76408.1); similar to Os03g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051556.1); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -0.054018908423817 -0.608486391974251 0.555354134138222 1 -0.4259720069338 14.5878257178617 -0.054018908423817 0.0598108148642549
AT4G14455_at 2.82412316240240 4.31921548551553 2.98486091789219 3.8908459133899 4.95695329695425 3.94648462930183 3.9712486584215 4.0775606877328 3.55113596971135 3.81368410984476 4.81978925185943 4.4069359673469 4.34531513125764 3.25792633796618 3.71224419293477 3.65523115347099 3.86452000687468 3.69268698019684 4.15447551346904 0.477305198403958 0.485417599869014 0.485990909116917 0.495977692744065 0.471856308469764 0.471856308469764 0.471856308469764 0.471856308469764 0.512248858683445 0.476895414298037 0.471856308469764 0.471856308469764 0.471856308469764 0.471856308469764 0.474940721025905 0.471856308469764 0.52331034873386 0.471856308469764 0.471856308469764 4 4 + 8310798 8310854 8310823 8310332 8312317 + gene protein_coding_gene FALSE TRUE AT4G14455.1 ATBS14B; protein transporter/ v-SNARE Encodes a Bet1/Sft1-like SNARE protein, which can only partially suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). Identical to Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-like SNARE 14b) (AtBS14b) (BET12) [Arabidopsis Thaliana] (GB:Q94CG2;GB:O23301;GB:Q8GYR9); similar to ATBS14A, protein transporter [Arabidopsis thaliana] (TAIR:AT3G58170.1); similar to putative Bet1/Sft1-related SNARE [Oryza sativa (japonica cultivar-group)] (GB:BAD22877.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.138157560464935 0.608343623895543 0.555445397922303 1 -0.426056878686527 7.77595975665804 0.138157560464935 0.349915462222429
AT3G57970_at 0.840610805384243 0.937837280098974 1.34478327012216 1.26432573902473 1.11161693544207 1.47639858721148 1.52824634969177 0.985641359757044 1.39490056112499 1.12048321103789 1.00499998833629 1.25818725884228 1.05057900011465 0.808756177723004 1.20623462107777 0.778890835078819 1.15190048108928 0.56905270702842 0.708457203468291 0.219108994973596 0.210129744484658 0.221731244640280 0.216043414208563 0.218058285768890 0.222429238735259 0.212365877890966 0.212174130527985 0.218261945612211 0.224597569592236 0.214507030163392 0.215334687180509 0.21612810168582 0.213468194738804 0.213539902906023 0.215638529797850 0.217219512334063 0.220087137078286 0.222663503839452 3 3|0 +|/ 21476762 21477589 21477121.9 21476203 21477654 + gene protein_coding_gene FALSE TRUE AT3G57970.1 emsy N terminus domain-containing protein / ENT domain-containing protein similar to emsy N terminus domain-containing protein / ENT domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57960.1); contains InterPro domain ENT; (InterPro:IPR005491) 0.0650793296673468 0.608253236972778 0.555503181640376 1 -0.426110601694224 2.21277693694408 0.0650793296673468 0.115235725888154
AT4G31870_at 8.22339815643153 8.17020091293145 8.63921785627729 8.61330040734963 8.1466157398257 7.97374809964228 9.10797669481646 8.97162125262653 7.176850482798 8.10335928593446 6.9606435677111 6.51299981066612 7.91833031364192 8.28060828576294 7.86003965333874 9.5394445550849 9.35417023515655 7.73710258021688 7.64751369002362 0.247471925538612 0.243955730625828 0.250324015672643 0.241404220828699 0.245008574696484 0.25275267343524 0.250450433130431 0.244287698866631 0.280844858179915 0.247298771951005 0.257645244310098 0.264009095233766 0.24083750264988 0.247672581281514 0.249094784773034 0.246650033869742 0.267950890982963 0.264930324022826 0.252238104433622 4 4|0 +|/ 15410404 15411294 15410936.111 15410211 15411623 + gene protein_coding_gene FALSE TRUE AT4G31870.1 ATGPX7 (GLUTATHIONE PEROXIDASE 7); glutathione peroxidase Encodes glutathione peroxidase. similar to ATGPX1 (GLUTATHIONE PEROXIDASE 1), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT2G25080.1); similar to glutathione peroxidase [Brassica napus] (GB:AAM12502.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.0513820802588021 0.608153990663975 0.555566632965232 1 -0.426169581884112 16.3122558207123 0.0513820802588021 0.0394540680297093
AT1G76380_at 4.28232833535048 4.70687988570178 4.24417243261382 4.66759486893658 4.71701409290796 4.33470212538194 4.83782860949629 4.53356938659146 3.18444959113148 3.36615520549735 3.32971132036146 3.55610173254413 3.63340540302282 3.97136285962969 3.30566330410194 4.03335474576856 4.2550764687091 3.32509651866776 3.76181870291734 0.236420686951534 0.228785785352780 0.234410181728465 0.227230704819024 0.230823189040887 0.238802477869882 0.229136819001178 0.225411869611622 0.228539365483007 0.235287518994902 0.226459128177573 0.229265851162985 0.229947489998083 0.230424881724535 0.225411869611622 0.227765468691062 0.233614372454008 0.226815999101838 0.24145353928456 1 1 - 28656316 28656973 28656553.364 28656048 28659474 - gene protein_coding_gene FALSE TRUE AT1G76380.1|AT1G76380.2|AT1G76380.3 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20670.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22713.1); similar to Os09g0550000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063862.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.0697331849635148 0.608044783105583 0.55563645750769 1 -0.426234471518747 8.09735923909724 0.0697331849635148 0.133853804906966
AT4G37830_at 10.8720717840259 10.9447461546679 10.9400900848235 11.132864860216 10.9114980205301 10.8732671725907 10.6773810751923 10.9976115368245 11.0238130501854 10.7179955387285 10.9554947137376 10.9827388889394 10.6184741979423 10.9248985733022 11.0109518926672 10.8107363939006 10.5876969058333 10.8605587855728 10.7345290725667 0.110779449938240 0.110021473421264 0.114139111141945 0.111274279048394 0.110126245451835 0.107147480219137 0.109284103371904 0.109188286056140 0.125612697473483 0.109973285263743 0.106475223896978 0.108955886757426 0.106833952349159 0.114324492467209 0.110567306581509 0.105700593181364 0.112504568952823 0.110606987025367 0.111237327642034 4 4|0 -|/ 17787686 17788727 17788325.4 17787473 17788828 - gene protein_coding_gene FALSE TRUE AT4G37830.1|AT4G37830.2 cytochrome c oxidase-related similar to Os03g0772800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051412.1); contains InterPro domain Cytochrome c oxidase, subunit VIa; (InterPro:IPR001349)|similar to Os03g0772800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051412.1); contains domain Mitochondrial cytochrome c oxidase subunit VIa (SSF81411); contains domain no description (G3D.4.10.95.10) 0.0549876518445811 0.608037936514273 0.555640835207605 1 -0.426238539308704 21.7533861766824 0.0549876518445811 0.0662265579865167
AT1G26470_at 7.63337595745095 7.59297867776713 7.25064153868497 7.09030506706260 7.13796253417844 7.31527710118593 6.94590180583407 7.15074884887408 5.37768663778487 5.07169851751087 5.44075745837595 5.9632526640766 5.55657570435296 5.66558801748637 5.79309198827473 5.47779097763271 5.97090749068991 5.26251539529336 5.75857010915529 0.232891892851193 0.236352258799219 0.231188390177164 0.24174068296687 0.229800865367053 0.229800865367053 0.229800865367053 0.229981640689236 0.247052446921015 0.233532475380276 0.233717838057170 0.230878733500582 0.234074984230039 0.242651747773959 0.243860023418903 0.234678128801968 0.2385198336489 0.236134744854134 0.229800865367053 1 1|0 +|/ 9155175 9155984 9155618.889 9155078 9156233 + gene protein_coding_gene FALSE TRUE AT1G26470.1 similar to Os05g0512500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056022.1); contains InterPro domain CT20; (InterPro:IPR012423) 0.0532267225011227 0.607554717181435 0.555949853508377 1 -0.426525528620666 12.7866297997997 0.0532267225011227 0.0549274769752003
AT1G60850_at 4.34372720663521 4.34850995931423 4.8093018588141 4.58018650941903 4.12972885751234 4.47616295751558 4.08315176415221 4.41692679242055 3.16428626615079 3.12873350850764 2.88843061196884 3.40737315809241 2.97686881717413 2.96522359459987 3.26011025939690 3.09678314477542 3.29735265146419 2.9797287363365 3.27740763116665 0.220402120190344 0.222073720884705 0.219773120401537 0.217868906019317 0.213782614813246 0.224263319432737 0.216748811386508 0.21606070797167 0.213828939377910 0.218818985723633 0.213528990362018 0.210075674480792 0.216460355132630 0.215652334723265 0.214596560819663 0.215337383268569 0.215409686386895 0.211483815716824 0.222786237813780 1 1|0 -|/ 22401790 22402619 22402246 22401581 22404027 - gene protein_coding_gene FALSE TRUE AT1G60850.1|AT1G60850.2|AT1G60850.3 ATRPAC42 (Arabidopsis thaliana RNA polymerase I subunit 42); DNA binding / DNA-directed RNA polymerase similar to ATRPAC43 (Arabidopsis thaliana RNA polymerase I subunit 43), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT1G60620.1); similar to RNA polymerase subunit (GB:AAB00528.1); contains InterPro domain RNA polymerase, RpoA/D/Rpb3-type; (InterPro:IPR011263); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261); contains InterPro domain RNA polymerase, insert; (InterPro:IPR011262) 0.0598037591511921 0.607465251247516 0.556007077401836 1 -0.426578640162527 7.5480251583901 0.0598037591511921 0.0922137934496284
AT1G01050_at 9.8864455046731 9.95338706399873 10.1108743921285 9.99771895347197 10.0280192393589 9.925156074103 10.3440467870365 10.1383234794764 9.70765649401117 9.77688655426536 9.6044594175723 9.5593937582431 9.49412981188814 9.74587554236255 9.5784847097416 9.67377448375104 9.74727501707204 9.57740730503347 9.50014810731316 0.106407794171105 0.102064408996383 0.108302947631098 0.10184188783085 0.100641506756163 0.109241072582617 0.10627455733285 0.106315360485703 0.111711577602823 0.106474220278197 0.103483717052078 0.103541842013800 0.10241462434822 0.0997129930886957 0.09903161540596 0.101712861760969 0.107364027246128 0.100545808124569 0.106678473711483 1 1|0 -|/ 31393 32565 31871.875 31170 33153 - gene protein_coding_gene FALSE TRUE AT1G01050.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT4G01480.1); similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT2G46860.1); similar to soluble inorganic pyrophosphatase [Populus tremula x Populus tremuloides] (GB:AAD46520.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) -0.0520361284262183 -0.607424457255824 0.556033171005006 1 -0.426602855143569 19.6900782988999 -0.0520361284262183 0.0458474801248206
AT4G19040_at 7.43451010643653 7.55507815246711 8.28624496734548 7.78981597064204 8.24782356932177 7.68790887722305 8.44074688208021 8.0280574832168 7.33147780104751 7.66108943116772 7.34877618713603 7.37480675419382 7.85501783053337 7.5369941169549 6.44820879288027 7.62376324692018 7.67510416626282 7.71017551042716 7.31950018195712 0.191763691315413 0.190008718185074 0.194025431357563 0.196942290078153 0.195132664570593 0.196216089152965 0.19979023081292 0.200048157612102 0.208946108686557 0.194314353627815 0.198804273876125 0.190008718185074 0.192889472353462 0.19369254789293 0.209395248507964 0.193077557760647 0.214849830683428 0.203390626370047 0.202711963911142 4 4 - 10431830 10432874 10432223.9 10431531 10437436 - gene protein_coding_gene FALSE TRUE AT4G19040.1 EDR2 (enhanced disease resistance 2); lipid binding Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion. similar to pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G45560.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10188.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10187.1); similar to pleckstriny domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47745.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.0738001055111897 0.607338560768809 0.556088116349448 1 -0.426653837656027 15.3757540662855 0.0738001055111897 0.149348822286215
AT3G20870_at 8.3190106086442 8.37028706744484 8.3244609229263 8.49415497479457 8.6085441581047 8.19240932758234 8.55653483732108 8.52019714302095 7.8949109722178 8.14583692081532 8.18832995777099 8.36824135430257 8.13386391534739 8.41846404093245 8.21913643687366 8.1833036128247 7.99419597624315 8.12919056508195 8.11998405958597 0.14839683044281 0.139906302154381 0.144330825423334 0.140484280859879 0.143923426578046 0.143571264692535 0.143930697997971 0.146094571820526 0.170291855809848 0.143040774840919 0.142728188500343 0.139163901997887 0.147795080041250 0.144835904945947 0.147547351592561 0.139163901997887 0.159109489162229 0.145119267956252 0.145160258983457 3 3|0 -|/ 7309520 7311434 7310424.75 7309285 7312758 - gene protein_coding_gene FALSE TRUE AT3G20870.1 metal transporter family protein similar to metal transporter family protein [Arabidopsis thaliana] (TAIR:AT3G08650.2); similar to Os02g0196000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046190.1); similar to branchy [Setaria italica] (GB:AAZ20768.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.0570741733133109 0.607274218591029 0.556129276047453 1 -0.426692022556046 16.5521589049608 0.0570741733133109 0.0785283035854054
AT2G18720_at 1.18138903939884 0.958898535896008 1.08703857097100 1.07184084889785 1.00510085147063 0.902691418953867 1.14503956573979 1.31759189735422 1.19558514763199 1.09577030893970 1.49867846382833 1.34904242433567 0.899694698954021 1.31282057226765 1.58994503807176 0.897694584820425 1.67906333763629 1.54478230667568 1.02916695993833 0.185410938464682 0.178145135729311 0.178863234714963 0.186363173718454 0.184121940584126 0.177860676641883 0.185220573398702 0.188030327984150 0.177860676641883 0.179033353324000 0.186554185489167 0.177860676641883 0.186442142984672 0.178674419241157 0.183725885336349 0.181995170321813 0.179429336986546 0.183671611643020 0.182392534630898 2 0|2 /|- 8122023 8122470 8122222.6 8122002 8123893 - gene protein_coding_gene FALSE TRUE AT2G18720.1 eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT4G18330.2); similar to EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit), translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G04170.1); similar to Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) (ISS) [Ostreococcus tauri] (GB:CAL53687.1); similar to Os12g0607100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067233.1); similar to Os12g0176800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066299.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.0527812678982559 0.607168317385344 0.556197024758459 1 -0.426754863140999 2.31035183299881 0.0527812678982559 0.0519149552470922
AT4G37840_at 1.00887714315413 1.15854353784104 1.06220152009727 0.94620264777416 0.963755212250781 1.37062240194718 0.991298635060226 0.87450151266109 1.71700505947008 1.08044620304016 1.49696762608867 1.39285627782795 1.41222695806908 1.20784072448761 1.53432913967546 1.42732434950908 1.73095069456982 1.12796663432836 1.33936933787344 0.217562883526687 0.213327763873116 0.218556703910728 0.215694162724105 0.217737113866328 0.218160254509755 0.219108261200445 0.221578590215638 0.221515492408371 0.218363747605025 0.220257898002745 0.213327763873116 0.221111686749976 0.215873845985809 0.217922085410545 0.213943623068271 0.225585530411286 0.215779640296467 0.228463881014067 4 4|0 -|/ 17790151 17790965 17790508.3 17790141 17792192 - gene protein_coding_gene FALSE TRUE AT4G37840.1 hexokinase, putative Encodes a putative hexokinase. Identical to Probable hexokinase-like 2 protein (EC 2.7.1.1) [Arabidopsis Thaliana] (GB:Q9T071); similar to ATHXK1 (GLUCOSE INSENSITIVE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT4G29130.1); similar to hexokinase [Citrus sinensis] (GB:AAG28503.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) 0.0573789193899181 0.607074638758757 0.556256958092468 1 -0.426810442493092 2.44462432669693 0.0573789193899181 0.0802492832945376
AT3G15410_at 7.03025819550197 7.21389184491602 6.00961120697206 6.24355556554922 7.68499371147341 6.71242712594101 7.56030861010197 7.07510874925506 6.31964930161008 6.03612134867107 7.08081834216746 7.34151351012023 6.84524597855253 6.50080937153358 6.62886701698612 6.654360834403 6.25257819046184 6.58084335273037 6.70143707117376 0.216051053356844 0.218578269852444 0.218195182780575 0.209438821793658 0.209438821793658 0.223301038758542 0.227400635837097 0.21227948864452 0.215020547567619 0.217649316100858 0.215236906288203 0.215157808500140 0.213432744643272 0.234775235141543 0.215731219528719 0.209438821793658 0.219979677442997 0.223811256044433 0.222204264611189 3 3|0 +|/ 5206034 5207077 5206542.222 5203299 5207566 + gene protein_coding_gene FALSE TRUE AT3G15410.1 leucine-rich repeat family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to Os02g0826600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048588.1); similar to hypothetical protein [Silene latifolia] (GB:CAA73132.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) -0.087008973329369 -0.607031223649312 0.556284735256916 1 -0.426836197892038 13.4852854504327 -0.087008973329369 0.195003962341038
AT1G80360_at 7.01556665427957 6.92207753734582 7.4222814256285 7.17960242701513 7.03003266229146 7.04760508886822 7.05141904707781 7.03305230977127 6.9448384005947 7.19776834191003 6.98674694426177 7.08673847891227 6.80404550292995 6.90497621990761 6.70187794718342 6.70937276247026 7.19207697084423 7.1857721757835 6.87829420303125 0.211650186469164 0.20661996082531 0.206957167303441 0.205909717860018 0.203931180977003 0.198185787442194 0.206505958881982 0.203474495821880 0.202835318046459 0.200231592002721 0.200599900336780 0.198514514604863 0.200215956088517 0.213814025947962 0.202538469959609 0.19895062195725 0.214955740917743 0.196695797751767 0.204166515742529 1 1 - 30213638 30214352 30213908.818 30213391 30215695 - gene protein_coding_gene FALSE TRUE AT1G80360.1 aminotransferase class I and II family protein similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to aspartate aminotransferase [Anabaena variabilis ATCC 29413] (GB:YP_324196.1); similar to Os01g0178000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042188.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.0519177036367551 0.606911617801606 0.556361263565968 1 -0.426907143511071 14.0644135726007 0.0519177036367551 0.0452197626739110
AT1G29630_at 0.931597940198475 1.1625716840909 1.02057349658808 0.719160287141564 1.32829390851294 0.982561896496678 0.989050617706031 1.16623973661990 0.91929311932082 1.09152696744971 0.897583917845695 0.987420506074248 1.66190470079721 1.51401057019051 1.20601745628690 1.18218074736820 1.44078040584486 1.45533259125782 1.35893380633236 0.230284709293033 0.232107038390468 0.234108521596187 0.233477436420126 0.234088548792648 0.236787441249033 0.233122682232407 0.229697909854440 0.241037110382263 0.235346056403031 0.227770442661309 0.226261934367311 0.235747446246411 0.226261934367311 0.247766829249344 0.234611579803129 0.239733116705495 0.236640991160071 0.231385725006906 1 1 + 10350428 10351384 10350978.2 10349452 10353717 + gene protein_coding_gene FALSE TRUE AT1G29630.1|AT1G29630.2 nuclease| similar to exonuclease, putative [Arabidopsis thaliana] (TAIR:AT1G18090.2); similar to Os01g0777300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044421.1); similar to Helix-hairpin-helix motif, class 2 [Medicago truncatula] (GB:ABE92796.1); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084); contains InterPro domain 5'3'-Exonuclease N- and I-domain; (InterPro:IPR000513); contains InterPro domain XPG N-terminal; (InterPro:IPR006085)|similar to exonuclease, putative [Arabidopsis thaliana] (TAIR:AT1G18090.2); similar to exonuclease-1 [Oryza sativa (japonica cultivar-group)] (GB:BAD60834.1); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084); contains InterPro domain 5'3'-Exonuclease N- and I-domain; (InterPro:IPR000513); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918) 0.0600924833941027 0.606556565754123 0.55658847374581 1 -0.427117670265779 2.24570877574889 0.0600924833941027 0.0940127168051173
AT2G29700_at 10.3282089933582 10.3797170898354 10.2000801452732 10.2252438903216 10.4712136374183 10.4434287218888 10.3710487500649 10.5643359791087 10.0607058166912 10.0528887685114 10.2650730688613 10.1438137636351 10.2279833127598 9.99741055616381 9.84698426064007 10.0805283146742 9.80310285250546 9.97369843067416 10.0908345225911 0.105497654032252 0.105081795977222 0.109395250033143 0.107910328358452 0.107059736015495 0.110083527096263 0.105081795977222 0.106834129839331 0.114063609994608 0.107237019097419 0.108525457559102 0.106650342909969 0.110444126754408 0.114020555449217 0.115180404304328 0.105657779491431 0.112327539031791 0.113804269382983 0.105081795977222 2 2 + 12704649 12705026 12704823.545 12704497 12705244 + gene protein_coding_gene FALSE TRUE AT2G29700.1 ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1) Encodes a protein containing one PH (pleckstrin homology) domain with a short N-terminal extension Identical to Pleckstrin homology domain-containing protein 1 (AtPH1) (PH1) [Arabidopsis Thaliana] (GB:Q9ST43;GB:O82386); similar to pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G05710.1); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB63699.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.0508274101541875 -0.60654816103355 0.556593852845746 1 -0.427122652425017 20.4281433288689 -0.0508274101541875 0.0352191762346677
AT1G04840_at 1.55384751747644 1.70845260695044 1.89320507058010 1.74276303477434 1.32720991480780 2.024398299154 1.49516969073717 1.50287684888056 1.84697711969779 2.04692668572986 1.43658157231248 1.79198000095308 1.49101628215144 1.90569280123052 1.60526903058132 1.53982540623261 1.87006899093671 1.88657769355941 2.12987711806784 0.172613665419407 0.179506563678726 0.168788685680378 0.178773984892103 0.172735245500983 0.172067553649780 0.168788685680378 0.173739985891661 0.172756870959660 0.180714880728851 0.171914665697723 0.177716835819187 0.176713382253812 0.174154399330891 0.170049132337753 0.173190105165020 0.171987085210168 0.183722922436088 0.168788685680378 1 1 - 1362898 1363441 1363160.636 1362866 1364961 - gene protein_coding_gene FALSE TRUE AT1G04840.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to Pancreatic ribonuclease; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE87347.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.067621544217945 -0.606519134760644 0.556612430155175 1 -0.427139858156486 3.5053920962917 -0.067621544217945 0.126302234541828
AT3G28550_at 2.77116742994150 2.405667444357 2.6783200053148 2.6186410807493 1.30780641285780 2.44023410678886 1.39521739616069 2.26241232555332 1.99150171040638 1.87461124663629 1.89982897585345 1.93458542978766 1.89055066841736 2.00175007588257 2.24423217252120 1.66856060144372 2.39935365506717 2.498097710969 1.8580801672602 0.217617613809135 0.220308731786563 0.216078223751279 0.23956818010377 0.215259687311549 0.224230845994004 0.215259687311549 0.217636707310644 0.224286124333824 0.226761288503470 0.216105352755127 0.215259687311549 0.215259687311549 0.224895912455355 0.216294978317704 0.217910979205952 0.215259687311549 0.215259687311549 0.217592648471725 3 3 - 10702304 10702380 10702316.5 10701944 10705166 - gene protein_coding_gene FALSE TRUE AT3G28550.1 proline-rich extensin-like family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G23720.1); similar to ATHRGP1 (ATHRGP1), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT3G54590.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G54580.1); similar to Extensin-like re (GB:ABD65126.1); similar to extensin, putative [Brassica oleracea] (GB:ABD65124.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) 0.105844894449853 0.606332639547058 0.556731798510108 1 -0.4272503875566 4.2225254182206 0.105844894449853 0.255017720085024
AT1G73940_at 4.51026963841509 5.0879397272388 4.66905797149045 4.70003928402001 4.53206215095957 4.88445775243511 5.09042478445815 5.48297978517111 3.89737342892218 4.44802999989365 4.49110790828644 4.76427682029354 4.09337651086137 4.46757968252333 5.17683583330293 4.47490806679531 4.70454952702177 3.89600762666633 4.56038332066419 0.24620687328136 0.248273460532465 0.266450826204148 0.257759310359881 0.25071220185748 0.263570128056406 0.256622798041301 0.249050750985326 0.258378875818016 0.250030010889045 0.249692643424153 0.249516663205737 0.249607635339905 0.251787430274249 0.244729740991031 0.247201090151040 0.251759799113671 0.247171934771276 0.254341586230609 1 1|0 -|/ 27802216 27803143 27802730 27801974 27803257 - gene protein_coding_gene FALSE TRUE AT1G73940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49410.2); similar to Os08g0360000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061634.1); similar to Os03g0852500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051924.1) -0.0699239318094838 -0.605996741405364 0.55694682985019 1 -0.427449383291155 9.27490846850464 -0.0699239318094838 0.135485850375666
AT3G49270_at 2.72830519955093 1.87057141223598 2.73868869507448 2.85414479437932 2.18317575736066 2.46594873144502 2.04784912083095 2.41113294001479 3.16722731022521 3.10381349790479 3.02271492766547 2.30637891854304 2.9762413868107 2.13245455005433 2.44437846459692 2.38439951033275 2.90307157079266 2.84409636924866 2.97304590680382 0.252698040470205 0.262179871420061 0.259730604107429 0.253986529926513 0.276015877519225 0.260343818567796 0.267815055090436 0.252698040470205 0.259512320942027 0.264392767614727 0.270629167415085 0.256246187833838 0.252698040470205 0.262046421621971 0.263996552053237 0.267614901000787 0.282573140250383 0.256995823291134 0.255114417858684 3 3 - 18278337 18278751 18278650.571 18278237 18279256 - gene protein_coding_gene FALSE TRUE AT3G49270.1|AT3G49270.2|AT3G49270.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49305.1) -0.0793102248245007 -0.605694003339722 0.557140672777334 1 -0.427628646190782 5.26651668164494 -0.0793102248245007 0.169644159310064
AT3G15740_at 1.13078725334047 1.31653321671205 0.987433092655203 1.12208573673170 0.964173537823928 1.47827399742821 1.04479598173370 0.960424619589968 1.00674947730514 1.04133339028051 0.764880772246101 0.843766794409594 0.627100301752911 1.23120475335826 0.991417273576622 0.887388398382393 0.796963126006613 0.674904440487044 0.948873997052202 0.217333696469186 0.213112161092593 0.210522470793403 0.213804651461384 0.211499702787417 0.210522470793403 0.212418022980889 0.210522470793403 0.210522470793403 0.21960327503474 0.214958608881866 0.212056167160131 0.218392806911013 0.221357574343241 0.21801532859218 0.214192303743786 0.212240167508373 0.222663109037437 0.210522470793403 3 3 - 5333956 5334426 5334183.727 5333886 5334560 - gene protein_coding_gene FALSE TRUE AT3G15740.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G14970.1); similar to PREDICTED: similar to Ubiquitin protein ligase Praja1 isoform 2 [Rattus norve (GB:XP_001058171.1); similar to Praja1 isoform a [Mus musculus] (GB:AAK15764.2); similar to Pja1 protein [Mus musculus] (GB:AAH08148.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.060963032851398 -0.605598080976312 0.557202099619375 1 -0.427685428148994 2.0511578565386 -0.060963032851398 0.0985121493139312
AT2G18550_at 1.82917542858247 1.67977413835068 1.93992670754644 1.79397345812753 1.73458093609379 1.89039678460337 1.52092356797524 1.62629283963674 1.95052481590823 2.08520332560545 1.93757233648267 1.86915752839227 1.97877095146797 1.61487099157229 2.04345328476955 1.81003664764874 1.68191494548084 2.10418671672140 2.44452552048736 0.186924361031474 0.187532633264265 0.185116059419486 0.186393107042042 0.184175238313740 0.190066322543931 0.182228935221786 0.193446124838919 0.18600177086722 0.183797205946779 0.187332440864592 0.187678881815719 0.182781024472583 0.189382559505796 0.182605711433871 0.189328088502160 0.191263080083269 0.195078923451913 0.191970212146439 2 2|0 -|/ 8056777 8057762 8057105.8 8056745 8058295 - gene protein_coding_gene FALSE TRUE AT2G18550.1 ATHB21/HB-2 (homeobox-2); DNA binding / transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-21 (Homeodomain transcription factor ATHB-21) (HD-ZIP protein ATHB-21) (ATHB-21) [Arabidopsis Thaliana] (GB:Q9ZU70); similar to ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36740.1); similar to homeodomain leucine zipper protein 14 [Oryza sativa (japonica cultivar-group)] (GB:AAS68139.1); similar to Os03g0198600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049280.1); similar to Os07g0581700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060106.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.0522055753634396 -0.605412209187996 0.557321139076381 1 -0.427795432536571 3.77192047227319 -0.0522055753634396 0.048641709956984
AT1G30135_at 0.508345354099456 0.716505089808039 0.505878972699352 0.8871897509248 0.713214934313793 1.00330938068953 0.745161183016925 0.442433337040569 0.69591402876122 1.26192359818429 0.669844744705026 1.15345576969051 0.946546211675918 1.22173564786260 1.14069742842866 1.11269985954116 0.750314622726 1.44263551945832 1.35568560614163 0.232265461187823 0.243673611130191 0.229969652627334 0.230084591997990 0.231420186918151 0.238750613742854 0.226597053711619 0.237363647944645 0.226597053711619 0.237097558323439 0.230897090528661 0.240260119838756 0.234109208823190 0.228982580038484 0.227055819586884 0.228407698285909 0.234689604306081 0.228260348839243 0.229231309276141 1 1|0 +|/ 10596518 10597055 10596868.222 10596476 10597222 + gene protein_coding_gene FALSE TRUE AT1G30135.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34600.1); similar to ZIM [Medicago truncatula] (GB:ABE81432.1); contains InterPro domain ZIM; (InterPro:IPR010399) 0.062260249907131 0.605318589679001 0.557381101976966 1 -0.427850827421929 1.76987923526076 0.062260249907131 0.104483653521759
AT2G21690_at 1.29428319698023 1.62662192448828 1.7767421527972 1.32721753607298 1.02907224041371 0.972185131677806 1.19205042774062 1.37629010828888 1.70401363330292 0.954605283844648 0.83630912678639 1.24652659390774 1.53947588526566 1.32487281719296 1.46894664117484 1.62212843414691 0.960413999304733 1.75178803328993 1.45507065854560 0.188509679827926 0.188712002515692 0.190416070349249 0.193991059993796 0.189256690545778 0.193179290693680 0.191135569965272 0.195471919004758 0.202077346813858 0.194362743737661 0.193532517098265 0.190784424068223 0.193226579086716 0.191282365623946 0.192213175700782 0.193957827806504 0.203012966740698 0.200321494549636 0.191979602517384 2 2|0 -|/ 9277243 9277641 9277424.5 9277194 9277677 - gene protein_coding_gene FALSE TRUE AT2G21690.1 RNA-binding protein, putative similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.3); similar to RNA-binding re (GB:ABE82734.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0617146581574086 -0.604696884820231 0.557779392370923 1 -0.428218489523206 2.68182661478148 -0.0617146581574086 0.102336898428710
AT2G31250_at 3.45307235122901 3.42574874707381 3.29750056444486 4.05435870662828 3.28173435918748 3.51455343989687 3.11015694477169 3.47827010527604 3.51499416117036 3.70819245967925 3.77413567873152 3.35851404398514 3.61469436815835 3.86794212500537 3.49681503683632 3.36074020875293 3.73037686393822 3.99572262428708 3.79322016872330 0.223129483313501 0.227351530169113 0.235086143142261 0.232277850649984 0.234939885793422 0.228050429269350 0.232376383610988 0.239469762639164 0.230477132458067 0.221397598935043 0.223638223610973 0.224520545027491 0.227197161852562 0.236333372917082 0.221397598935043 0.22280717303324 0.234167307759134 0.232192251301830 0.224219194909718 2 2 - 13326848 13327354 13327111.727 13326698 13328603 - gene protein_coding_gene FALSE TRUE AT2G31250.1 HEMA3; glutamyl-tRNA reductase similar to HEMA2, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT1G09940.1); similar to HEMA1, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT1G58290.1); similar to Glutamyl-tRNA reductase 2, chloroplast precursor (GluTR) (GB:P49294); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Glutamyl-tRNA reductase; (InterPro:IPR000343) 0.0739783763196493 0.604650394740704 0.557809182238493 1 -0.428245968577084 7.11292600993159 0.0739783763196493 0.151192032410538
AT2G46860_at 0.520388769237774 0.662773762981448 0.911066735163402 0.972357066030888 0.464645962255538 1.01283238062541 0.79336499678924 0.679954579905274 1.0660367349208 1.52084036223147 1.3801397141774 1.20056486582597 0.554248618480561 1.07148596111726 0.958211395133565 0.842925605745022 1.13702996335339 1.39776216394805 0.77699249387364 0.226381011060230 0.229526438083051 0.229050087317561 0.229791637399795 0.226717329612575 0.229490433109269 0.228314504923431 0.229081979075941 0.232148788772043 0.23583573834973 0.231665495463158 0.231459191331757 0.23887613995171 0.228202676328961 0.237109284454633 0.226381011060230 0.235839059322619 0.237860643991695 0.228993797855393 2 2|0 +|/ 19260983 19261943 19261335.778 19260757 19262344 + gene protein_coding_gene FALSE TRUE AT2G46860.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT1G01050.1); similar to Inorganic pyrophosphatase [Medicago truncatula] (GB:ABD32723.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) 0.0613055905438628 0.604632316344718 0.55782076673424 1 -0.428256653707160 1.8467159814476 0.0613055905438628 0.100520818545014
AT3G15353_at 14.2065414732255 14.1451241923218 14.3688042765221 14.3637436550257 14.3438940744131 14.2919250300251 14.3218806729422 14.395448793598 14.4225310077117 14.5719417739239 14.5980603571791 14.5370123613450 14.6499267533145 14.4319690803145 14.1957510276424 14.4706936774958 14.5176723954143 14.5172261519739 14.4025518272674 0.044804859246936 0.0437475531056733 0.0448415174356734 0.0439635694016067 0.046757012932263 0.0469244408489169 0.0477971603183226 0.0457907850665292 0.0460440529058475 0.043898251625484 0.0450945658593161 0.0436387055265712 0.0440756671200187 0.04578845593241 0.0486232304729493 0.0440462548672618 0.0465215637640342 0.0454989440473836 0.0442940706697764 3 3|0 -|/ 5180843 5181294 5180966.375 5180674 5181407 - gene protein_coding_gene FALSE TRUE AT3G15353.1 MT3 (METALLOTHIONEIN 3) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage similar to metallothionein-like protein [Thellun (GB:AAM19713.1); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347); contains InterPro domain Whey acidic protein, core region; (InterPro:IPR008197) 0.0494785409626224 0.604601946665659 0.557840227689833 1 -0.428274602859226 28.7824021936188 0.0494785409626224 0.0188865538383995
AT1G47570_at 6.72442023507932 6.0942226449974 6.30428865760603 6.49491001271472 6.90303191301339 6.41411945681118 6.82522749737591 6.45617222726061 5.40252875429576 5.79363614138426 5.2117686342012 5.31551026775945 5.76054011188249 5.5141583798206 5.26593668908666 5.89143683963929 5.80875623234246 5.18271470237468 5.74867539644332 0.202807642209603 0.200719534237857 0.199067817970455 0.198519615760081 0.206549024602867 0.206647939817947 0.200258192964342 0.200951490591563 0.206933792528769 0.199873557297430 0.203043934252283 0.200038807597206 0.198519615760081 0.201636873225161 0.205330649281256 0.198519615760081 0.204938791668067 0.210210308009850 0.202733968225986 1 1|0 +|/ 17484073 17485538 17484756.125 17481095 17485942 + gene protein_coding_gene FALSE TRUE AT1G47570.1|AT1G47570.2 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to Os11g0175500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065879.1); similar to At1g47570 [Oryza sativa (japonica cultivar-group)] (GB:AAX95796.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0751752531890374 -0.604418638631906 0.557957699887057 1 -0.428382924154712 12.0981154953637 -0.0751752531890374 0.155626346100921
AT1G19620_at 2.18910104408116 1.83199707969929 1.55569163038700 1.66823414235728 1.86577243441527 1.90820983922199 1.54933278474049 1.08488887405967 1.83680704345929 1.5667480314667 1.88623496501796 1.86969238639622 1.83965186996683 1.97172429974673 1.49268315780369 1.63281484199862 1.58425754196570 2.27678042541723 1.93953567276286 0.217248538205559 0.223353488957998 0.226806564984951 0.218500203247766 0.220755951453160 0.217248538205559 0.217248538205559 0.221846419239772 0.222618636500555 0.218062204599243 0.223163088762951 0.223021952755568 0.217248538205559 0.217248538205559 0.222362863137377 0.217248538205559 0.229330880188067 0.222621590583341 0.218824724907483 1 1 + 6784579 6785027 6784816 6784011 6785066 + gene protein_coding_gene FALSE TRUE AT1G19620.1 similar to PREDICTED: similar to Glycine Rich Secreted Protein family member (grsp-1) [Mus musculus] (GB:XP_996857.1) 0.0619233763798674 0.604194113387594 0.558101604699403 1 -0.428515560097977 3.50678357125464 0.0619233763798674 0.103500309298303
AT2G25430_at 7.26216467628646 7.33186803355357 7.51576573173594 7.3602936958452 7.98496453909106 7.53865956762942 8.02382954165397 8.03117440059481 7.82313705775987 7.65691628905665 7.8621582158804 7.80532166726627 7.86933683962462 7.92998624234187 7.61860635486257 7.74462620406684 7.41452755613158 7.59817769649481 7.86913310602153 0.150727048967973 0.151466187049746 0.147383331136241 0.151133421236458 0.151580362479156 0.154763709247726 0.152633557101822 0.151728788187080 0.159094978072703 0.147904282276413 0.144990686829098 0.149875251149790 0.154166960036261 0.162670124099630 0.145133420178329 0.149983888138615 0.163462855583461 0.153647291242002 0.155798521146445 2 2 + 10831167 10831686 10831399 10829449 10831995 + gene protein_coding_gene FALSE TRUE AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein Identical to Putative clathrin assembly protein At2g25430 [Arabidopsis Thaliana] (GB:Q8LF20;GB:Q9SKK6); similar to binding [Arabidopsis thaliana] (TAIR:AT4G32285.2); similar to Os03g0275500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049708.1); similar to putative clathrin assembly protein [Oryza sativa (japonica cultivar-group)] (GB:AAV25008.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.0575289166545971 -0.603758256868376 0.558381016799999 1 -0.428772906910311 15.3877923973136 -0.0575289166545971 0.0826817780257445
AT4G21480_at 2.14123451911719 1.82223721312225 1.59673449828273 1.39032320450404 2.3320527531648 1.56766363178053 1.8802874899349 2.28611728290006 2.33164743525267 2.293653596094 2.63731311368205 2.45823173490705 2.33724661554786 3.06627539343881 2.36094747594506 2.88459388778119 1.97318276086111 2.69090676031285 2.55945311355673 0.219625110132078 0.221673423068398 0.207750596201214 0.215560362072307 0.207750596201214 0.212525827723050 0.212032420069058 0.213459480534552 0.217227881481129 0.219976238312154 0.213897363563807 0.209134831825505 0.211024552940709 0.209703385835272 0.217952679601712 0.220849312645326 0.21706452834739 0.208653696130911 0.209755699027105 4 4|0 -|/ 11433339 11433965 11433581.2 11433314 11435296 - gene protein_coding_gene FALSE TRUE AT4G21480.1 glucose transporter, putative Identical to Sugar transport protein 12 (Hexose transporter 12) (STP12) [Arabidopsis Thaliana] (GB:O65413); similar to STP4 (SUGAR TRANSPORTER 4), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G19930.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to STP1 (SUGAR TRANSPORTER 1), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G11260.1); similar to monosaccharide-H+ symporter [Datisca glomerata] (GB:CAD30830.1); similar to monosaccharide transporter [Populus tremula x Populus tremuloides] (GB:CAG27609.1); similar to hexose transporter 1 [Juglans re (GB:AAY89231.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.077303217413603 -0.603615862057871 0.558472317883667 1 -0.428856944957825 4.35008395715613 -0.077303217413603 0.163566728798124
AT3G63070_at 7.04765144268568 7.41547254145692 6.70914716982025 7.60038226023164 7.30582647221757 7.20271213828438 7.08838976007862 7.01634256225781 6.75996956240994 6.24782787886848 6.46690939448656 6.49732634692578 6.61104739702512 6.54335480316935 6.07397790522088 6.8352075998008 6.42618257721959 6.55899816760233 6.21293419330248 0.217766717656155 0.217543800759115 0.221289209421196 0.214325692621660 0.213867731162954 0.228783251350374 0.213867731162954 0.224648658804439 0.248413996803349 0.219180791202501 0.213867731162954 0.216607821220565 0.213867731162954 0.223290180430595 0.223316316865034 0.213867731162954 0.232645494945034 0.243956811702060 0.218647525441228 3 3 + 23319250 23320234 23319669.091 23313340 23320633 + gene protein_coding_gene FALSE TRUE AT3G63070.1 PWWP domain-containing protein similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G48160.1); similar to PWWP; Regulation of nuclear pre-mRNA protein [Medicago truncatula] (GB:ABE77466.1); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain PWWP; (InterPro:IPR000313) 0.078633956294853 0.603551427130016 0.558513635167177 1 -0.428894966866712 13.6275085777749 0.078633956294853 0.168265358728697
AT2G33710_at 0.510826059012066 0.632372439762522 0.457738279242742 0.6961244786161 0.925014639699836 0.979959132200844 0.618123045116932 0.343166679818026 0.480885511210438 0.628200139752192 0.518431714888948 0.289297023049902 0.753929546330412 0.925188859305041 0.671465535167772 0.523059933198866 0.97530390566709 0.476369827880579 1.20346007594768 0.221583611848105 0.216904186080835 0.219414963369653 0.229836506096978 0.223458857599874 0.216904186080835 0.226664433475435 0.216904186080835 0.222480645758222 0.240105388038924 0.218964966106976 0.223375804860785 0.228004441684141 0.220097733702989 0.218617111117732 0.21899634101026 0.224886521889119 0.231505581793860 0.220056989207174 2 2 - 14266433 14267595 14266734.727 14265585 14267809 - gene protein_coding_gene FALSE TRUE AT2G33710.1 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to AP2 domain-containing transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G61890.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE86010.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0546846470308994 0.603159428916915 0.558765030779175 1 -0.429126196690976 1.35165527859506 0.0546846470308994 0.0670732290306484
AT3G12290_at 10.6967347264103 10.8053460310466 10.8089097198114 10.7827002780461 10.7117746804842 10.4943027561125 10.6703436303061 10.5284462571936 10.5578977341966 10.5045396626886 10.6451237830948 10.522720213614 10.4352215887624 10.5350602925381 10.5044194008670 10.4764815953445 10.5495662275235 10.5259580792845 10.2709088369161 0.0891265159908746 0.0839447474254972 0.088429502715136 0.0853959542597039 0.0831369135168558 0.0910974179034811 0.0870706158565826 0.0854427182464775 0.0934040974286962 0.0856251968032666 0.0893634557062024 0.0848880243614513 0.0874326413189504 0.0869805296337584 0.0926006031104954 0.0851041267472306 0.0923261264202947 0.088560614459658 0.0859323293421417 3 3 + 3920519 3921304 3920957.455 3919509 3921526 + gene protein_coding_gene FALSE TRUE AT3G12290.1 tetrahydrofolate dehydrogenase/cyclohydrolase, putative similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] (GB:AAD01907.1); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672) 0.0520371752012827 0.603054153935539 0.558832556247195 1 -0.429188271927294 21.1717035810409 0.0520371752012827 0.0489203994777482
AT4G15690_at 5.73714041976532 6.32384009365841 5.57284952356159 5.96826675548318 6.38541722273622 6.44962294760336 6.16728878523173 6.58510606893811 8.42616650087765 7.79545543876636 8.4960209754185 8.27854182295505 6.65919443874789 7.26471843051624 8.38595036134035 7.33238301452188 7.4725080351081 8.29997775541213 7.2001746715941 0.180807124143522 0.173919480729585 0.181916596436933 0.178635871551530 0.174055076545941 0.171472254888118 0.174528055858933 0.173360764447806 0.186499610570982 0.182917009153512 0.189130024154630 0.184760604114269 0.173876449196955 0.175768547776375 0.184356901611263 0.174837930435536 0.189578692752080 0.187486210290993 0.1732355584899 4 4 + 8934477 8934726 8934583.545 8934322 8934919 + gene protein_coding_gene FALSE TRUE AT4G15690.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S5 (AtGrxS5) (GRXS5) [Arabidopsis Thaliana] (GB:O23420); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15680.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.0714542061895769 -0.602947080446518 0.558901239960246 1 -0.429251397308769 13.9391551727882 -0.0714542061895769 0.142627382316845
AT4G28170_at 1.36258558463688 1.62976568135718 1.7942026593408 1.80827666497551 1.28366053862393 1.57170093108257 1.23676239001217 1.40473493356338 1.75126900141582 1.59087427969772 1.63027272715899 1.74898295750862 1.43879222440569 1.41724900881763 1.78818028039147 1.28847002946105 1.42204300525566 1.36670032945732 1.47859014221380 0.206431478413279 0.219356044779795 0.206281206411373 0.213778761773418 0.207303328996719 0.213713149133334 0.213551160195802 0.206126563735578 0.211670149673242 0.218296725423020 0.216816368565430 0.206800094730308 0.209822048733514 0.207284017010072 0.219309832987713 0.203715362373986 0.223765577570797 0.207898697045614 0.219207923727217 4 4 + 13981683 13982003 13981847.455 13981641 13982048 + gene protein_coding_gene FALSE TRUE AT4G28170.1 unknown protein 0.0558366151556207 0.602866957017574 0.55895263926381 1 -0.429298627407784 3.07120990365714 0.0558366151556207 0.0739827055226627
AT1G07300_at 3.64001471455453 3.80516941578449 4.14269484829945 4.1282607792503 4.27235537263192 3.77231063330641 3.97574366602974 4.0534554442974 2.81673212564958 4.38631802238104 3.50196207457005 2.80908163914329 3.86170815280851 3.58382789487832 3.32123370415881 3.76132515662101 4.53268415674904 3.84983228057735 4.03006154535471 0.220364706076639 0.220364706076639 0.222975999475127 0.224288076848138 0.220364706076639 0.221249166375680 0.221259275063805 0.224531019297061 0.224787400698361 0.221217885274144 0.230301131009405 0.230606110500478 0.220364706076639 0.223837812687568 0.235751849340845 0.228112880568464 0.227502740074784 0.220364706076639 0.227289840083978 1 1 - 2245919 2246259 2246088.273 2245757 2246491 - gene protein_coding_gene FALSE TRUE AT1G07300.1 josephin protein-related similar to josephin family protein [Arabidopsis thaliana] (TAIR:AT2G29640.1); contains domain FAMILY NOT NAMED (PTHR13291); contains domain SUBFAMILY NOT NAMED (PTHR13291:SF1) 0.0593229580910011 0.602708384269808 0.559054371660248 1 -0.429392083555284 7.67228933271931 0.0593229580910011 0.0921535631631551
AT1G30550_at 3.47362730936489 3.25466384557873 3.85504069682978 3.69219350607835 3.98627031685467 2.99348846999901 3.32376637142547 3.29911190554830 3.55201527788258 3.56076107602186 3.27121561031450 3.55488454080155 3.33960119628894 3.84849911242277 3.27634644983971 3.34909687066166 2.97480369074027 3.18034323265749 3.32889733766146 0.220670370419333 0.224925228616212 0.228671094520575 0.228477102776004 0.219052277141476 0.225062042749975 0.218478153429846 0.220155083407775 0.218478153429846 0.221077340213225 0.218478153429846 0.218478153429846 0.228147786692178 0.225671532667321 0.218478153429846 0.219653602414457 0.225708743399927 0.219031928553354 0.218478153429846 1 1|0 -|/ 10820995 10821672 10821299.778 10820682 10823623 - gene protein_coding_gene FALSE TRUE AT1G30550.1 similar to WW domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G45231.2); similar to PRIP-interacting protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36514.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) 0.0813734151191685 0.602463015613516 0.559211808247027 1 -0.429536648492594 6.89972367028715 0.0813734151191685 0.178228480231785
AT3G09810_at 6.95321935478013 7.28975331462902 7.46449246329774 7.57560283416783 5.60935118371864 5.37122345178773 6.67574260227025 7.15997629286194 6.14771740510289 6.03881764711118 5.7900448070285 6.36209578282176 6.31037535689197 6.920137429907 6.53002281940355 6.2263003087544 5.53685255260965 6.13818825252467 5.33197705944208 0.244522135049309 0.244522135049309 0.245598286400753 0.249854132591686 0.244522135049309 0.263584577514187 0.249827701991353 0.249050645899294 0.254469478726599 0.252413549178127 0.248061001687185 0.244522135049309 0.252706072991929 0.244522135049309 0.254062241600165 0.244522135049309 0.272063145313027 0.252129912032226 0.261209701698622 3 3|0 +|/ 3009618 3011022 3010536.667 3008699 3011442 + gene protein_coding_gene FALSE TRUE AT3G09810.1 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative Identical to Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 6) (NAD(+)-specific ICDH 6) (IDH-VI) (IDH6) [Arabidopsis Thaliana] (GB:Q8LG77;GB:Q9SF84); similar to isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G03290.1); similar to NAD-dependent isocitrate dehydrogenase alpha subunit [Brassica napus] (GB:AAO61642.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) -0.0636286406841885 -0.602457453622659 0.559215377288077 1 -0.429539924840407 12.7955482876699 -0.0636286406841885 0.111722528797960
AT1G56350_at 3.86338188117021 3.57753452269861 3.84249673718014 4.39249043485367 4.0527528111272 4.19889482328957 4.02432193278665 4.0822205470691 3.18313484111884 3.37074440375425 3.20377167623485 3.32174920955200 3.47734905868961 2.98384697598475 3.20960233380794 3.43586536744847 3.20475967347042 3.24238612918948 3.55005143373963 0.225124673591106 0.228929407015692 0.229885382399818 0.222087707528132 0.222718510710956 0.222087707528132 0.223142712709053 0.240833608289007 0.230868892404699 0.223198378145953 0.223828582708714 0.224399810743448 0.225340884071027 0.22425509568177 0.222087707528132 0.22299698600816 0.229620436111969 0.222087707528132 0.222087707528132 1 1 + 21100766 21101371 21100909.1 21098443 21101653 + gene protein_coding_gene FALSE TRUE AT1G56350.1 peptide chain release factor, putative similar to HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109), translation release factor [Arabidopsis thaliana] (TAIR:AT5G36170.2); similar to Os03g0305700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049885.1); similar to protein chain release factor B [Erythrobacter litoralis HTCC2594] (GB:YP_458240.1); contains InterPro domain PCRF; (InterPro:IPR005139); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352); contains InterPro domain Peptide chain release factor 2; (InterPro:IPR004374) 0.063366695428894 0.602322911454923 0.559301714706579 1 -0.429619169709443 7.31820830923094 0.063366695428894 0.110661863519312
AT4G02440_at 7.8451535816731 8.40142730490682 7.821609668798 8.09862313370255 8.58702719685512 8.53219129801443 7.8223444564618 8.39325446087881 8.56305201411106 8.06113230012489 8.77229052497898 8.19960238391541 8.5869025650209 8.6286346580229 8.03696139759632 8.77967607926435 8.20270021366295 8.27058868441899 8.67858975205799 0.141675988820310 0.141163491955873 0.142183334623600 0.139798266192736 0.139487937489447 0.153786944376308 0.140981565025840 0.143387998580265 0.156762062088374 0.149509135058305 0.138097641182754 0.138681481637843 0.142824979323002 0.144369166155574 0.143556720690240 0.136572274606055 0.168197084242727 0.145959234897555 0.141413786616802 4 4 + 1073007 1073523 1073235.182 1072481 1073779 + gene protein_coding_gene FALSE TRUE AT4G02440.1 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta. Identical to Phytochrome A-associated F-box protein (Empfindlicher im dunkelroten Licht protein 1) (EID1) [Arabidopsis Thaliana] (GB:Q8LEA8;GB:O81289); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS79732.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0723647073122597 0.602225050141029 0.559364518199806 1 -0.429676799335328 16.6221676803904 0.0723647073122597 0.146343492412082
AT3G26085_at 8.60243789687245 8.44112239404338 9.00784107548677 8.7396042322629 9.3866655826865 8.55861615623208 9.4529187054846 8.9948896964723 9.0744314639822 9.12520828319971 8.90147231432065 8.74882459869602 8.81547646408462 8.91150556853194 8.54626183482404 9.04182083996068 9.01523912509485 8.83906633404286 8.98678543594563 0.138626003997678 0.131471001559615 0.140956874224416 0.138788814431926 0.141736704715523 0.145784267961775 0.144543870084091 0.143942294679804 0.146197349156344 0.132474495943505 0.136631713508539 0.140012342584072 0.140680152010079 0.142774857871975 0.141895888691487 0.13688338225609 0.141087820705944 0.141442719886976 0.133578294771826 3 3|0 +|/ 9532538 9533540 9532884.375 9532006 9533850 + gene protein_coding_gene FALSE TRUE AT3G26085.1|AT3G26085.2 CAAX amino terminal protease family protein similar to Os05g0295200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055110.1); similar to hypothetical protein glr2883 [Gloeobacter violaceus PCC 7421] (GB:NP_925829.1); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.0796718771579199 -0.602213067801923 0.559372208256536 1 -0.429683855025547 17.8553120237694 -0.0796718771579199 0.172485252951580
AT4G10790_at 8.84261468964244 8.92472275243826 8.78658391802266 8.78821494972167 9.1637462821284 8.89850178506249 8.4322805933512 8.60554269414583 9.0159179223779 8.61329630708998 8.68746433167502 8.79222070399526 8.44665695254685 8.92188918744875 8.21037291802394 8.94541085504142 8.82154412717053 8.55605542109983 8.69508298259324 0.139511899592058 0.136361782594916 0.138754137698288 0.136254841017041 0.132726617411933 0.136738341080298 0.135851043471650 0.138746302668893 0.139121468691071 0.140469385589345 0.150102749707699 0.137409454561484 0.133539040820795 0.134260296111922 0.139329165738525 0.137209116394533 0.135983219590637 0.14618477368814 0.137221221966075 4 4|0 -|/ 6640757 6641830 6641325.6 6640595 6643058 - gene protein_coding_gene FALSE TRUE AT4G10790.1 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to Fas-associated factor 1-like protein [Capsicum annuum] (GB:AAW66458.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UAS; (InterPro:IPR006577); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.0529538130554357 0.601694304793889 0.559705197541688 1 -0.429989198570137 17.5290097328036 0.0529538130554357 0.0566390738560944
AT4G19440_at 2.66838597606221 2.82119915025318 2.60046614466764 2.67781387198045 2.55278296462806 2.73436394814599 2.81001529420790 2.74932766133664 2.64494835538959 2.41569669873134 2.96842803781853 2.77389005737737 2.57486986931047 2.53281873768914 3.00099860163179 2.6511051313146 2.89177503282171 2.77720103245036 2.58284555811235 0.159253827986276 0.160502896930022 0.156758278202848 0.164556390285741 0.162512852416740 0.157558787649659 0.157858671446343 0.157722274908279 0.162617722294081 0.163466832243761 0.158766116565796 0.156046433473015 0.157429240075894 0.162335673300675 0.161288603404674 0.158886290285249 0.156046433473015 0.156325103914391 0.161849374049713 4 4 - 10602080 10602554 10602344.364 10600801 10604531 - gene protein_coding_gene FALSE TRUE AT4G19440.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G55840.1); similar to Os07g0300200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059422.1); similar to Os08g0290000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061460.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0513401601822695 0.601196822851712 0.560024629890401 1 -0.4302817860209 5.36140238472501 0.0513401601822695 0.0444549035331008
AT3G15390_at 2.93014906200568 2.76109008397943 3.69202414809373 3.26184936207581 3.5424876070116 2.83741209950623 2.64973532763098 2.43354250194417 3.38863201741748 2.9905096355799 2.74084808679106 3.13017862315907 2.19123548854525 2.89752829565532 2.12404107706612 2.38096090054628 2.50827976778403 3.15362166028901 3.02253893399924 0.223624509519905 0.218267975901381 0.236662382907010 0.226802533140642 0.217551453359950 0.221556009677680 0.217162337916074 0.215641931759467 0.238004380888454 0.214586092738690 0.218848370309897 0.216103147407023 0.21984825329393 0.222948095574587 0.219069490655455 0.215877814657350 0.216913107893904 0.228814576938270 0.216030746394226 3 3|0 -|/ 5196740 5197855 5197264.778 5196696 5199538 - gene protein_coding_gene FALSE TRUE AT3G15390.1 similar to PRLI-interacting factor, putative [Arabidopsis thaliana] (TAIR:AT5G58720.1); similar to UBA-like; HSC20, C-terminal oligomerisation [Medicago truncatula] (GB:ABD28681.1); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.0733786343812083 0.601029697946593 0.560131963183136 1 -0.43038002777804 5.90090140727015 0.0733786343812083 0.150617427869847
AT1G64700_at 2.57393414334163 2.44757106952334 2.85300551413179 2.72604289923267 1.72513275986641 2.16812248984397 2.29061822480162 2.4146706563248 2.26465168643727 2.41333624646353 2.65868452552721 2.73786454837014 2.37358073435135 2.30662828377853 2.75173409840000 2.23106538377763 2.37081094456293 2.75699825508446 2.35465658708567 0.191644401241110 0.193589378000917 0.188602102312328 0.196542534203814 0.192644841958919 0.190631010353868 0.188602102312328 0.190031769395318 0.198111129968981 0.188602102312328 0.193663927785586 0.193907030919277 0.193398189780590 0.194524157434936 0.193061949321709 0.195975100792606 0.19128333082679 0.198715254309645 0.188602102312328 1 1 - 24043595 24044114 24043835.545 24043473 24044258 - gene protein_coding_gene FALSE TRUE AT1G64700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61920.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83063.1) 0.0577916995034524 0.600915630949413 0.560205227427188 1 -0.430447065675212 4.83370506299679 0.0577916995034524 0.0854329422149214
AT2G34530_at 1.10912775078500 1.41550651127317 1.51940693039484 1.06543512023407 1.02839353328059 1.27470497562714 1.49276406589094 1.40564378567397 1.59154546839659 1.27759688761059 2.00025745093248 1.56081074697098 1.65491620846233 1.53020160675392 1.82348485305279 1.71735233099194 1.77199929978058 2.12087720419459 1.67548001315108 0.186703548489851 0.182952749123467 0.184539041424939 0.182542928516475 0.188609464880526 0.185355396476026 0.181300006126630 0.194670071824759 0.187174847652862 0.182455763997743 0.184876775728901 0.180438507176178 0.187278078426834 0.181210863816259 0.187869954182009 0.178710911101051 0.180203842855880 0.185845440028774 0.181869205452205 2 2 - 14556289 14557095 14556704.6 14556057 14557324 - gene protein_coding_gene FALSE TRUE AT2G34530.1|AT2G34530.2 |unknown protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G34540.2); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)| 0.0619189755340449 0.60084798613299 0.56024867761376 1 -0.430486815367196 2.93255362699257 0.0619189755340449 0.105011192611299
AT2G36450_at 1.84771739615047 1.73791301700274 1.74900132251694 2.08235038549861 1.57429620242918 1.94849076236172 2.05586171684449 1.9082019552794 2.64860223609850 2.36740465972701 1.76304083595055 2.26551400370896 2.76686302673106 2.27495596131239 2.36175848419656 2.24330484985009 2.63496950850196 2.64009199486798 2.29867300528302 0.206070478529726 0.210053407684841 0.214643308596486 0.214879032132795 0.206070478529726 0.210020309373163 0.206070478529726 0.206070478529726 0.206070478529726 0.212504946104767 0.209510009965538 0.211502709562319 0.206070478529726 0.20884402522024 0.209469611248492 0.207557739982055 0.211747436078830 0.206070478529726 0.210091681671846 2 2 - 15301413 15301794 15301643.818 15301382 15301936 - gene protein_coding_gene FALSE TRUE AT2G36450.1 AP2 domain-containing protein encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT1G12630.1); similar to putative DRE binding factor 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD29233.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.0591515768402808 -0.60047768837367 0.560486563450563 1 -0.430704337252089 4.26649857818184 -0.0591515768402808 0.0923864885363053
AT2G24000_at 0.90932934125135 0.899616060778171 0.99748388806014 1.04817285559377 0.710315807672338 0.804672576033396 0.494202806511519 1.1531565082366 0.812786664426547 1.00637768766684 1.04650007607890 1.04777760216483 1.21704011182384 0.997885125829096 1.21846161452197 0.777625212184828 0.893860215817957 1.20226640672065 1.02372339780587 0.218123579954012 0.214302089522726 0.210659362536796 0.213125146063512 0.220359243078184 0.222204289956579 0.210659362536796 0.214849436152321 0.210659362536796 0.223034972585086 0.211290691824051 0.214351088232685 0.210659362536796 0.215787968888138 0.2121572795296 0.210727678409611 0.215642455917469 0.223521123902948 0.211628729225831 2 2|0 +|/ 10220235 10221043 10220571.1 10216555 10221122 + gene protein_coding_gene FALSE TRUE AT2G24000.1|AT2G24000.2 SCPL22 (serine carboxypeptidase-like 22); serine carboxypeptidase|SCPL22 (serine carboxypeptidase-like 22) similar to BRS1 (BRI1 SUPPRESSOR 1) [Arabidopsis thaliana] (TAIR:AT4G30610.1); similar to SCPL23 (serine carboxypeptidase-like 23), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G24010.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os02g0794500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048377.1); similar to Os01g0833500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044713.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL23 (serine carboxypeptidase-like 23), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G24010.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os01g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042076.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0643164491609202 0.600437881571632 0.560512139373547 1 -0.430727713300927 1.87602187832175 0.0643164491609202 0.115543883145275
AT4G05530_at 9.2316202285936 9.42980347049977 9.5568758537800 9.51585983037816 9.67908676167535 9.18918638458599 9.3385473687283 9.18567290192526 8.69335821487686 8.70387247420197 8.40239340432078 8.46251762536457 8.52387610776666 8.69579515269221 8.56188709439643 8.57058426591993 8.70801333130937 8.65029110255373 8.52648825901952 0.140197204385902 0.138610505183906 0.148627726857640 0.141696802284480 0.141413947047856 0.139252906431557 0.147967794493411 0.140219843903706 0.142010372159927 0.139625850391464 0.141415340232055 0.136433787681272 0.142108580213297 0.144565087630056 0.137258082026202 0.136750117592578 0.148763784059178 0.141107786088311 0.134750553826278 4 4|0 +|/ 2817040 2817984 2817493.889 2816389 2818362 + gene protein_coding_gene FALSE TRUE AT4G05530.1 short-chain dehydrogenase/reductase (SDR) family protein similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29150.1); similar to Os09g0133200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062630.1); similar to PREDICTED: similar to CG10672-PA [Tribolium castaneum] (GB:XP_970502.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.0597606631712426 0.60011669957956 0.560718522863283 1 -0.430916270637431 17.9974113049741 0.0597606631712426 0.0954678280320826
AT4G25590_at 2.53151897550318 2.01771799978755 2.58217090083377 2.16767995235728 2.14212082816217 2.00657363527606 2.31646689174914 2.16867621869308 2.77387600546118 2.81339599484587 2.81094427500635 2.21610094712042 2.80651884636389 2.65153458428068 2.6529128916468 2.9185626855894 2.73121457789939 2.79328707829474 2.01253227985818 0.237626311439069 0.231010611509597 0.234461142444073 0.240978613765852 0.236675106656667 0.233074378951337 0.245716995806674 0.241017984895239 0.245306127546814 0.236548031886180 0.234880443754935 0.232582347989933 0.239102825983623 0.236613834391244 0.235995125260872 0.235497579015817 0.23677351433047 0.242066487574801 0.236719530696135 4 4|0 -|/ 13059149 13059612 13059373.6 13058945 13060116 - gene protein_coding_gene FALSE TRUE AT4G25590.1 actin binding similar to actin-depolymerizing factor, putative [Arabidopsis thaliana] (TAIR:AT5G52360.1); similar to pollen specific actin-depolymerizing factor 2 [Nicotiana tabacum] (GB:AAL91667.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.0652038500554429 0.600083819237592 0.560739653318925 1 -0.430935568503933 4.85706696487709 0.0652038500554429 0.119396345232844
AT3G50230_at 1.57102432503818 1.58646398107341 1.60696980326504 1.44828361162569 1.43127425154574 1.78158134236963 1.20278540582496 1.82837887676344 2.14294515256589 1.55261191070599 1.85516087175350 1.16519328855727 2.10736562265886 1.95478647376891 1.92734184689301 1.73286033019879 1.86359720356656 1.64939195038089 2.11248206117116 0.212901899741139 0.212770288133324 0.221515184400635 0.216908284896567 0.213941165106251 0.217872252389474 0.216578631934476 0.224382691900889 0.213890982612027 0.218648252764249 0.213894459111956 0.213607098030642 0.218008592658559 0.217489910353218 0.212740977853504 0.211731151239577 0.218286264199318 0.216863991471708 0.218045786468853 3 0|3 /|+ 18633679 18634069 18633863.4 18631581 18634182 + gene protein_coding_gene FALSE TRUE AT3G50230.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G67200.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82078.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.0670933689911294 -0.599968439643808 0.560813805163705 1 -0.431003278380141 3.41608281966488 -0.0670933689911294 0.127110027595796
AT3G46070_at 1.05743624199901 0.651712565827086 1.20320889175005 0.847208752298403 0.988424295090246 1.14244791125129 1.03164199911618 1.07246041064789 1.15763423441709 1.23989997540312 1.17338476190627 0.898690590555528 1.07194282013795 0.726440470998394 0.962045375049838 0.849524973880668 1.15915763298798 1.02196403098692 0.466661270355268 0.194674704622579 0.197407854375848 0.196970802919034 0.196986794984866 0.199418544675954 0.195518652887323 0.196791611974089 0.195279388723795 0.205362802863827 0.193275637096093 0.197495557883167 0.197395458613803 0.200125770431525 0.197290552717922 0.195219709207734 0.197490498343125 0.195957019549611 0.195577622210247 0.205131014406709 3 3 - 16931463 16931896 16931698.545 16931430 16931942 - gene protein_coding_gene FALSE TRUE AT3G46070.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT3G46080.1); similar to C2H2-type zinc finger protein [Brassica napus] (GB:ABB52061.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.0600858317688692 0.599269542170068 0.561263086647047 1 -0.431413163332743 1.96813046289157 0.0600858317688692 0.097394146653941
AT1G68980_at 3.20438056551504 3.22369949660632 3.43175821479199 3.55744714296594 3.48730373462299 3.41939495083032 3.62064672730180 3.42451123466633 3.23052718294375 3.66462465727614 2.99709590174377 3.37897676277140 3.25818325269237 3.41857707715095 3.22122704194523 3.17715713411597 3.13403325404024 2.88338886090504 3.27805973245209 0.201179978085904 0.195963963425491 0.189145013846230 0.202468655756721 0.187082581041558 0.199594595755058 0.186909417428053 0.186909417428053 0.195471608399815 0.190937632152852 0.195197215069873 0.189004570867043 0.187689608672529 0.200291210396984 0.201524256621519 0.190808791318575 0.203096091395750 0.199415496815326 0.195399234998406 1 1 + 25938015 25938521 25938231.273 25936661 25938693 + gene protein_coding_gene FALSE TRUE AT1G68980.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G69290.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95579.1); similar to Os01g0788900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044484.1); similar to Os12g0102600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065238.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.0509120543864676 -0.599238948157257 0.561282758345835 1 -0.431431095750593 6.7084679758599 -0.0509120543864676 0.0421243853424256
AT3G29600_at 1.22563645036414 1.11871903218448 1.6344347416868 1.31481714155868 1.51667002567992 1.55972166139256 1.62677518821975 1.35755427935094 1.52078218609002 1.33459983968517 1.39094436510703 1.22302462838651 1.46266383080491 1.37883747930758 1.50356973690636 1.39456627691219 1.53031273749620 1.19744919549559 1.48875157067090 0.173255470414470 0.176687846359685 0.178561816983208 0.177588247333061 0.171215994455373 0.175476415885056 0.173796052263101 0.177144364681609 0.176333957016114 0.172781615409900 0.173025086443664 0.176705366444585 0.175737103370475 0.173944814661690 0.182352556477681 0.177342688976211 0.173578735172385 0.182286071667755 0.176977128364487 3 3 - 11409939 11410420 11410307.182 11409888 11410546 - gene protein_coding_gene FALSE TRUE AT3G29600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54926.1) 0.0556830771015053 0.599230357128014 0.561288282375584 1 -0.431436131155267 2.83589884678003 0.0556830771015053 0.0750187647690972
AT4G34160_at 2.57108370665907 2.45661878591922 1.66518368140798 2.16657505066169 1.65117325374567 1.98304776403972 1.92902459702366 2.50770694823523 3.27795803737002 2.95016619052068 3.7419260325765 4.52227308976283 3.09925029787516 4.10291000017084 4.43716972766319 3.74007611823454 2.5382495873919 4.24066562182482 3.25041856396521 0.218837386123786 0.214179586443013 0.232873182758072 0.219745252930766 0.217584716077680 0.220238444289447 0.222597373083946 0.219366009513662 0.219933163362717 0.214269583422281 0.214035281783857 0.221063548649502 0.214373808240039 0.219154408953802 0.236664004657914 0.216028189551299 0.215570116589521 0.228260126875314 0.214035281783857 4 4|0 +|/ 16358610 16359280 16358993.5 16357643 16359559 + gene protein_coding_gene FALSE TRUE AT4G34160.1 CYCD3;1 (CYCLIN D3;1); cyclin-dependent protein kinase regulator encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1. Identical to Cyclin delta-3 (CYCD3) [Arabidopsis Thaliana] (GB:P42753;GB:O49489); similar to CYCD3,2 (CYCLIN D3,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G67260.1); similar to NtcycD3-1 [Nicotiana tabacum] (GB:BAA76478.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0718436117449848 0.599171877096641 0.561325885820488 1 -0.431470405893094 5.59746638515625 0.0718436117449848 0.145768071621485
AT1G47750_at 5.60284246776585 5.67381450556809 5.33122145230042 5.92095781954823 5.77432025382698 5.97086543651851 5.49358738776923 5.50704274699533 4.58592310422608 4.12119173823261 4.77172242755414 4.11555355993622 4.09483569010166 4.09989062431104 4.27022369907041 4.45816377882488 4.72788689534932 3.94461514639221 4.38919101914238 0.232530429895417 0.229051614932206 0.228234784015588 0.228234784015588 0.233187581114294 0.232029523570342 0.228234784015588 0.228234784015588 0.236096680984548 0.233852629253016 0.228234784015588 0.230906485327352 0.229583660067158 0.236939463848217 0.233694325439138 0.235036028536458 0.235452896159981 0.233357350516696 0.243782585814612 1 1 - 17571871 17572397 17572197 17571696 17572599 - gene protein_coding_gene FALSE TRUE AT1G47750.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to peroxisomal biogenesis factor 11 family protein / PEX11 family protein [Arabidopsis thaliana] (TAIR:AT3G47430.1); similar to Os03g0302000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049868.1); similar to Peroxisomal biogenesis factor 11 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95492.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.0624728270080203 0.598994873782928 0.561439709813516 1 -0.431574127312938 9.997229891233 0.0624728270080203 0.108299188787736
AT2G43460_at 10.0519398249253 10.2159231932812 9.80974047862894 9.84717841237939 9.74924134829245 9.95315433425668 10.1871318827833 10.2890674355023 9.7023008986717 9.7590252240517 10.1063143704795 10.3853321098282 9.93870294865666 10.1340372343047 10.5594185384721 9.82280053990721 9.7007302429706 9.76159679105759 9.96353519825924 0.117571828877886 0.120853067777501 0.118874484354435 0.119057134121339 0.116424785910907 0.118567317889264 0.114278019303619 0.115227566607482 0.135626943526439 0.121622854715475 0.116851263568386 0.110777903253180 0.113111749807292 0.118738371345595 0.120214633199585 0.113699459100695 0.122198728011172 0.115549904374335 0.113986048243293 2 2 - 18053823 18053959 18053892.455 18053081 18054478 - gene protein_coding_gene FALSE TRUE AT2G43460.1 60S ribosomal protein L38 (RPL38A) Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38B) [Arabidopsis thaliana] (TAIR:AT3G59540.1); similar to Ribosomal L38e protein [Medicago truncatula] (GB:ABE93319.1); similar to 60S ribosomal protein L38 (GB:P46291); contains InterPro domain Ribosomal L38e protein; (InterPro:IPR002675) -0.0516787253841313 -0.598744652661214 0.56160063911409 1 -0.431720704629372 19.9426239657331 -0.0516787253841313 0.0490277963102487
AT1G50970_at 1.82042472220275 1.72936678528982 1.77348286529168 1.7121808421724 1.97544826600585 1.30345427704479 1.65004644433010 1.72202357879099 1.72371156360105 2.02480647066949 1.83979754896037 1.95625086164639 1.90555506043270 1.93680305995398 1.68508022687848 1.47825059668577 1.89683978106367 2.09482894710402 2.06995205416573 0.216686051967385 0.215024895495776 0.21845335497018 0.212805615149281 0.217578721246488 0.216488989660716 0.214523936317322 0.216275259529661 0.218684958196189 0.217118393098425 0.213002748242441 0.214128270094679 0.224928393224704 0.214019312508185 0.21614050334619 0.213262957600436 0.213218115805896 0.227874545725112 0.214241373719698 1 1|0 +|/ 18902740 18903907 18903583.75 18899991 18903936 + gene protein_coding_gene FALSE TRUE AT1G50970.1 membrane trafficking VPS53 family protein similar to HIT1 (HEAT-INTOLERANT 1), transporter [Arabidopsis thaliana] (TAIR:AT1G50500.1); similar to PREDICTED: similar to CG3338-PA [Tribolium castaneum] (GB:XP_973234.1); contains InterPro domain Vps53-like, N-terminal; (InterPro:IPR007234) -0.0648190445814099 -0.598555923806935 0.561722036627177 1 -0.431831222580883 3.60513636755076 -0.0648190445814099 0.118489520485124
AT1G55280_at 3.4623336397021 3.31680765121745 4.20529526829542 3.80839457434367 5.08706885800678 4.35663601787769 4.62108144979569 3.56417480562807 3.57843167580176 3.80592949113181 3.62777882838903 2.97711460710469 3.94393932056325 3.55344190496195 3.03557841859329 3.36467175465943 3.83098802314376 2.67379655818209 4.02626727125883 0.252751516019632 0.254000310873510 0.263318535326914 0.271617256724873 0.262026727770298 0.250669818069167 0.255882691707361 0.256377217607425 0.269141473517643 0.251973171942316 0.249095457927438 0.253373760079275 0.249095457927438 0.263730647556243 0.261072830113207 0.249095457927438 0.265267161067818 0.269727364731034 0.252622197402331 1 1 - 20626779 20627265 20627063.818 20626627 20628297 - gene protein_coding_gene FALSE TRUE AT1G55280.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78682.1); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976) 0.097810078631976 0.598531998842905 0.561737427101338 1 -0.431845230510803 7.6424522779486 0.097810078631976 0.234058704742249
AT4G18510_at 1.42030471533128 1.50611124080651 1.57517153258506 1.51411357387209 1.41322000094428 1.31174005010978 1.50224469357820 1.16968467263909 1.69229939051279 1.27221062050783 1.43599474430951 1.16165733580651 1.46860346946763 1.43925333730673 1.50917688505629 1.47051252204267 1.50791114915595 1.66801306513833 1.24887657691035 0.200934044927047 0.195155852196301 0.201266861273585 0.198938793012746 0.201996031601993 0.204198354255495 0.200581344014262 0.201901131782189 0.206034012340190 0.205126763105282 0.196070704480018 0.202267450221699 0.201320943935438 0.198510446408443 0.197481488852131 0.195778684738986 0.197082547701689 0.200623097436642 0.197424251334848 4 4 + 10212112 10212287 10212217.364 10211880 10212432 + gene protein_coding_gene FALSE TRUE AT4G18510.1 CLE2 (CLAVATA3/ESR-RELATED); receptor binding CLE2, putative ligand, member of large gene family homologous to Clavata3 0.0535765381737497 0.598288775405003 0.561893901333596 1 -0.431987606842081 2.85762506473951 0.0535765381737497 0.0628703525861589
AT4G33710_at 1.02674073981687 0.5540431194447 0.833848060354185 0.75853126317531 0.481312075616841 0.814298452113282 0.764167814507259 0.826746577709631 0.622189614880626 0.826801972028412 1.02831980858132 1.04653049919064 1.07231852024299 1.14939113849434 0.915980587552109 0.871101292478741 0.987424842570513 0.890303074974043 0.958706212225977 0.214748171384529 0.202621066235947 0.215968060419348 0.218489610873937 0.204609662253791 0.213482439606319 0.206718539327402 0.209134899721963 0.207636637106971 0.218093310260619 0.204865237684589 0.214066658989088 0.217817019801609 0.214266295377477 0.206755075180428 0.202621066235947 0.215388870682475 0.215067675334142 0.212488236426873 4 4 + 16181070 16181520 16181266.364 16181015 16181779 + gene protein_coding_gene FALSE TRUE AT4G33710.1 pathogenesis-related protein, putative similar to pathogenesis-related protein, putative [Arabidopsis thaliana] (TAIR:AT5G26130.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) 0.0608390937054358 0.59795035358287 0.562111660098544 1 -0.43218562000873 1.65632958962006 0.0608390937054358 0.101486149775450
AT2G03830_at -0.0100887459396003 0.150112404796353 -0.0687643494772618 -0.0924745749286642 -0.0683725471388816 0.219211769816627 -0.168583110737357 -0.0747565509324507 -0.302926298728349 -0.083773764684261 -0.0228476413024696 -0.419350661611439 -0.556299338267194 -0.21351099318164 -0.222448341675551 0.128435725890220 -0.175540288542979 0.0436886401118351 -0.400825124834284 0.191117929894712 0.188137769517401 0.19118826939206 0.191696029981152 0.191138145071748 0.189039696883691 0.192378735130938 0.196026685711324 0.206215138149149 0.193909330521625 0.197411531854202 0.191847490840626 0.197718845984718 0.196347428059169 0.201477328344573 0.188137769517401 0.200882153093786 0.196001000488971 0.193837968059221 2 2|0 +|/ 1171231 1172117 1171484.2 1171133 1172349 + gene protein_coding_gene FALSE TRUE AT2G03830.1 unknown protein 0.0530016795155574 0.597745300069868 0.562243625202589 1 -0.432305547587767 -0.235335717270004 0.0530016795155574 0.059379376614447
AT4G13010_at 11.0513987881069 11.2968672581152 11.5127252070724 11.4818542362104 11.4210703250947 11.4481674804580 11.7919355553992 11.8594021439228 11.4125115439433 11.2721526240479 11.2571969382044 11.0603397865608 11.2841273642480 11.3138144545007 11.0970558374925 11.3320117666750 11.2456696609853 11.1256193335340 11.1632207624313 0.0639610460308786 0.0651480460050406 0.066273165158342 0.0688124514867974 0.0654975994624154 0.0665627648936251 0.0633430207970311 0.067572758106686 0.0696273388079428 0.0651358041950999 0.0652907968182329 0.0640152666629494 0.0647696218640146 0.0674052713873254 0.0660059830264115 0.063128426973683 0.0720543033121103 0.0679528288730003 0.0655066579638983 4 4 + 7601965 7602392 7602137.545 7600548 7602726 + gene protein_coding_gene FALSE TRUE AT4G13010.1 oxidoreductase, zinc-binding dehydrogenase family protein Identical to Putative chloroplastic quinone-oxidoreductase homolog (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9SV68); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G23740.1); similar to ripening regulated protein-like [Solanum tuberosum] (GB:ABA81857.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.0510477707714481 -0.597545370930818 0.562372308908283 1 -0.432422441227287 22.7314814757554 -0.0510477707714481 0.0446245478667685
AT1G23610_at 2.29653480593485 2.24031220151858 2.41158940229606 2.26110302589556 2.34348808293341 2.35901098517113 2.56831830480592 1.96820226983439 2.34551301880662 2.87273192608516 2.84602013795507 2.51971479683995 2.89049345098794 2.68227322237381 2.72449667839907 2.46245813522101 2.69744912946925 2.66512408482422 2.69325254860063 0.183256018744768 0.197015768748144 0.184938646773869 0.180470238565227 0.188678415027668 0.188731299838597 0.185714039851756 0.186909849210252 0.180493594408668 0.188890198282565 0.183605642465530 0.186690459174638 0.185298305210744 0.181390832882203 0.187448796748338 0.186367112673202 0.193304304519672 0.182832689979125 0.189909902464173 1 1|0 -|/ 8362908 8363156 8363055.4 8362904 8363215 - gene protein_coding_gene FALSE TRUE AT1G23610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27670.1); similar to OBP32pep (GB:AAA79703.1); contains InterPro domain Protein of unknown function DUF220; (InterPro:IPR003863) 0.0621469259476292 0.597520219081859 0.562388498960825 1 -0.432437144313349 4.9676546526352 0.0621469259476292 0.107543044755556
AT1G27150_at 7.10999024008 7.45348920319774 7.1056731705149 7.17121809875014 8.42650778560113 7.8028288044018 7.88421780516609 7.57211299011881 7.69197877482307 7.69169313955824 7.35370004108507 7.45234390916353 7.76198103103982 7.57493278230934 6.8774966484532 7.54032026858 7.59731292435379 7.37956745474361 7.72069824482179 0.180468458687401 0.186359151654634 0.197552946101363 0.186745960951114 0.180210332727482 0.183362370039553 0.175847616300842 0.181436726298030 0.192551951733484 0.182445960275358 0.191813264043372 0.182471713194727 0.176914998702937 0.181798335093514 0.183874648721874 0.187099757076048 0.187778058676838 0.184328303878859 0.179181046461480 1 0|1 /|+ 9430952 9431856 9431451.111 9429034 9432261 + gene protein_coding_gene FALSE TRUE AT1G27150.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G27110.1); similar to expressed protein, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81727.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0688227160459951 -0.597509325884103 0.562395510908621 1 -0.432443512001204 15.1375865633290 -0.0688227160459951 0.135012870413952
AT3G07150_at 1.01204683215995 0.859533393546398 1.02221291934159 0.69761663970789 1.24645190581121 1.26563392016442 1.30788525785712 1.11541734097436 0.997108557295506 0.872573338097818 1.14912732472202 1.01505329866768 1.2890093394934 1.15863515685253 0.891354172003156 1.06660238538025 0.806404549758977 1.49525566955534 1.08166812036434 0.194333039740236 0.188733843401493 0.192851816643479 0.198932763447375 0.192170432136832 0.192467293569970 0.192447487480319 0.191920947488622 0.220774094529426 0.198650455383160 0.201511988322051 0.195254433776443 0.200746275130905 0.195472725676837 0.198301007068831 0.205337694783315 0.198243907864813 0.203595478763164 0.200808092924721 3 3 - 2263959 2264525 2264275.273 2263812 2264582 - gene protein_coding_gene FALSE TRUE AT3G07150.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87616.1) 0.0547025192950512 0.59706690206179 0.56268033974725 1 -0.432702042242712 2.11220656401540 0.0547025192950512 0.0705152509685484
AT4G20450_at 1.20264781141705 1.19260408303248 1.34131082413048 0.849994251687511 1.04488581077620 1.18603530408640 1.34539904146548 1.02144394334598 1.54582388611164 1.45341521741990 1.72232190069392 1.28575012490851 1.91555057029654 1.24124732277092 1.51021151248799 1.55412986087459 1.48321944034055 1.89405663471284 1.84199138768953 0.179890971669028 0.178127812179083 0.176706885068734 0.183933088775712 0.181593364683081 0.181149920572884 0.191389328082705 0.182179368391098 0.177737512338338 0.187271817642723 0.179071414759882 0.181488343348071 0.177206101735951 0.180218012023437 0.180533081287368 0.179944399022084 0.188072404058398 0.186890723438792 0.182992605015052 4 4|0 -|/ 11024077 11024710 11024316.7 11024065 11029019 - gene protein_coding_gene FALSE TRUE AT4G20450.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G29000.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G28960.1); similar to putative receptor like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAU44057.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0614498741665289 -0.596869997973087 0.562807130574781 1 -0.432817045713016 2.74281734272241 -0.0614498741665289 0.104746392176427
AT2G39580_at 6.68660135184554 6.32790455208303 6.77398360915375 6.32661614779364 7.69545510045712 6.74922589101595 6.64358357358191 5.95263545427454 7.05568242454282 7.24868007796653 7.0145194130208 7.14938376006439 6.83319103613552 7.06461500216512 6.72463682109762 7.5114030821267 6.83932603467937 6.90527605837117 7.59297799514058 0.201444895453221 0.192153121186014 0.195621771914824 0.218937016534284 0.188253755358092 0.198885471790922 0.193125922634472 0.191892222557926 0.200881588891192 0.182242620750096 0.182154353287622 0.184802685305571 0.187776648923017 0.196475362295042 0.194145041374220 0.186535005237793 0.219019797576776 0.188390771255224 0.182154353287622 2 2 + 16523435 16523800 16523645.273 16517503 16524151 + gene protein_coding_gene FALSE TRUE AT2G39580.1 binding similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98988.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0949096779499032 0.596706431981146 0.562912466256679 1 -0.432912550912975 13.7967044101128 0.0949096779499032 0.225739183308389
AT2G29220_at 1.56013664120720 1.3092894407177 1.75422441226426 1.56779456153878 1.15080592657552 1.90170883203548 1.2086359257963 1.65097125457951 1.61550568006337 1.97560902664361 1.66440507405951 1.27955209339489 1.13315455132032 1.36288205299729 1.72112965688467 1.75996493040278 1.49890933882853 1.87806160093584 1.95763982114542 0.201647709969928 0.206254772436114 0.206094959536096 0.201647709969928 0.202829700117597 0.202372000567645 0.203884954458634 0.203509102295792 0.205643157092298 0.209816128197135 0.214898492467409 0.203595292261621 0.204768357932972 0.206451748829405 0.212672727778353 0.208015906940051 0.202913378101321 0.211285575576127 0.208903781863396 2 2 - 12569866 12570408 12570170.273 12569858 12571741 - gene protein_coding_gene FALSE TRUE AT2G29220.1 lectin protein kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G29250.1); similar to putative receptor-type protein kinase LRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAC24925.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.0754761563680768 -0.596634122901008 0.562959036408307 1 -0.432954763974941 3.20636700182456 -0.0754761563680768 0.160222464346113
AT4G21190_at 5.53840096084846 5.67439928401072 5.7731298022469 5.67617253195602 6.07929011780237 5.9986135443821 6.17730794161501 6.18785951950104 5.60927174231869 5.24015284004062 5.74194939872349 5.66153544936653 4.97415190146254 5.4829926150946 5.80829731179174 6.08736686854814 5.50559941389241 4.96537415682462 5.3994392586506 0.232574938055424 0.226916037433952 0.231851005514401 0.229513444877080 0.234628548621233 0.234744760210057 0.234389727674318 0.231770914186262 0.252662757497499 0.23093027995529 0.226916037433952 0.228367824372296 0.232936186310811 0.234071598647432 0.231642401622814 0.230754408338381 0.238871999138792 0.237049421815294 0.234581963800222 4 4|0 -|/ 11292504 11293118 11292806 11292202 11294019 - gene protein_coding_gene FALSE TRUE AT4G21190.1 EMB1417 (EMBRYO DEFECTIVE 1417) similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.2); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os01g0757700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044296.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0497150075313735 0.596509452272631 0.563039334633397 1 -0.433027533804001 11.3604948810285 0.0497150075313735 0.0321510702739956
AT1G07530_at 7.65059228355449 7.88065750938186 7.6015419830173 8.11129386600904 8.25867911613348 8.37962731621685 7.65167810185434 7.8451678257527 6.92117931973424 6.94552748162492 6.30412926106142 6.38138517493678 6.2611342119264 6.6170538588835 6.0600680127544 7.32165711340197 6.95886638990485 6.4022896408453 7.10865438590144 0.168795500730702 0.170744047032390 0.175577113055716 0.171644342837773 0.169947652633532 0.178890965643046 0.166987337361284 0.167633836442300 0.168251544460876 0.1687991937461 0.173199589988974 0.167680535155032 0.167353398560244 0.171455426553191 0.174104859419560 0.170953103618595 0.170022171058370 0.174106796928164 0.175050195201847 1 1 - 2313844 2314328 2314144.273 2313579 2316466 - gene protein_coding_gene FALSE TRUE AT1G07530.1 scarecrow-like transcription factor 14 (SCL14) similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.061351232123775 -0.596382585565656 0.563121053797196 1 -0.433101570927663 14.6874597604323 -0.061351232123775 0.104528989488792
AT4G30570_at 3.11402073676174 2.73421051842927 2.91809810300101 2.75718445931030 3.64249242348128 2.73125983472219 2.90785960966737 2.76842351992710 3.032849552012 2.99945492701514 3.28894454707695 3.28480614696751 2.94740096249461 3.20401758360915 3.14120178043801 3.30942322084920 3.16305354579146 2.80307680641661 3.31207617595097 0.181438242052300 0.182645924792466 0.177501039354529 0.183308135274226 0.186327187670054 0.186923792860215 0.182546304213454 0.175294746728225 0.178899018680060 0.184274558017336 0.177400397673700 0.179023536798979 0.177693782155621 0.176817545621402 0.182410353601995 0.182621413273102 0.188729379125392 0.186315177132114 0.175294746728225 4 4 - 14930748 14931228 14930984.818 14930683 14931957 - gene protein_coding_gene FALSE TRUE AT4G30570.1 GDP-mannose pyrophosphorylase, putative similar to CYT1 (CYTOKINESIS DEFECTIVE 1), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39770.1); similar to GDP-mannose pyrophosphorylase [Malpighia glabra] (GB:ABB53473.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) 0.0795385657391957 0.59625555164871 0.563202887217316 1 -0.433175690926213 6.07546071359493 0.0795385657391957 0.174771181887616
AT2G04580_at 0.625032071977435 1.34451204964137 0.969403972435332 0.859434921999753 0.647333052753075 1.25291190739840 0.846314324340268 1.15029450443783 0.711092868845253 1.24649374475251 0.266254127552678 0.675758813522147 1.12538018946288 0.68582988848988 1.07330506304151 0.462425827086524 0.918543905274434 1.33303441623083 0.78927011548706 0.207746976144064 0.192195920251423 0.195986478396827 0.191215225682236 0.188066188726954 0.189069669880955 0.188066188726954 0.190091206128110 0.190178963340093 0.194202258399674 0.197249659058678 0.194697371119933 0.194949580340024 0.194953439622065 0.188066188726954 0.191149388029711 0.188151195242679 0.192459326934717 0.191482593899809 2 2 - 1599679 1600481 1599972.636 1599679 1600830 - gene protein_coding_gene FALSE TRUE AT2G04580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22440.1); similar to 52O08_2 [Brassica rapa subsp. pekinensis] (GB:AAZ67547.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.0786598274074588 -0.595417030702793 0.563743214715456 1 -0.433664570375312 1.82849731988671 -0.0786598274074588 0.172089296618464
AT1G68550_at 5.38759557988869 6.40824712279546 6.19388516400307 6.40858577984702 6.61350927781271 6.4687680302686 6.04944251854425 6.2559363466644 5.63851399017277 5.87449373472372 6.52997206609475 5.81938766034387 5.72715503612812 6.37718956495447 5.61271148542132 5.62668286501917 5.16647992648285 5.42758572994673 6.53676872002423 0.272775633600824 0.256127732557764 0.260648271227854 0.263715231940441 0.256127732557764 0.280956883931652 0.262822782482341 0.256127732557764 0.294694555190308 0.272230812477154 0.256127732557764 0.256127732557764 0.26616379075134 0.26437349211411 0.26335934322437 0.257698643144533 0.287050164042558 0.287228142067024 0.264616276445548 1 1 - 25729492 25729904 25729665.364 25729118 25731364 - gene protein_coding_gene FALSE TRUE AT1G68550.1|AT1G68550.2 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G25890.2); similar to Os09g0309700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062835.1); similar to AP2 domain-containing transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36231.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0825925322508279 0.595406730962079 0.563749853453669 1 -0.433670571404086 12.1244900725309 0.0825925322508279 0.185694642148857
AT1G28640_at 1.56987942937097 1.33213996789276 1.39308729292803 1.57091035921968 1.63021291260295 1.61180898900957 1.37101597051214 1.81413595763467 1.87936941875304 2.19750539878104 1.54339225107165 1.32004912897684 1.71367684941378 1.65286043893403 2.09729740137328 1.67632738830806 1.54069194189565 1.91314070402374 1.41040639875781 0.215003130056927 0.216871725275704 0.212362211583071 0.210795715889594 0.212446495981696 0.216758108734657 0.211802547066711 0.216529797510259 0.227532923694750 0.214410710843267 0.210255730135657 0.212205889447159 0.216289439333670 0.216557830836027 0.214504885059975 0.214951589607355 0.213344476973014 0.213790310017009 0.221617732221915 1 1 - 10067610 10068268 10067904.727 10067549 10069163 - gene protein_coding_gene FALSE TRUE AT1G28640.1 GDSL-motif lipase, putative similar to ARAB-1 (Arabidopsis lipase), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT1G28670.1); similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28650.1); similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28660.1); similar to lipase 2 [Brassica napus] (GB:AAX58135.1); similar to lipase 2 [Brassica napus] (GB:AAX62802.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0586010843384582 -0.594946212990985 0.564046726104194 1 -0.433938788155597 3.29228548577814 -0.0586010843384582 0.0923591819616024
AT1G78960_at 4.49957687811087 4.51776778157285 4.88095153100423 4.72124047616432 5.31472245856699 5.16426117094981 4.82204614145458 4.39982122079543 4.46533159670421 4.56688759337159 4.25848680487308 4.08004547546433 4.36777243997571 4.55973482853584 4.14067198397801 4.55129683697639 4.83445456216965 4.25327669790291 5.15164444766923 0.203593894892461 0.188977653509523 0.195888990147181 0.193196219044091 0.189879993785431 0.207335394347444 0.188977653509523 0.195742257937596 0.204592882877605 0.196001963753209 0.193470753451115 0.201921655927689 0.188977653509523 0.189511304618684 0.192155032722979 0.194153998581199 0.198344075720647 0.193481250327722 0.203071801439302 1 1|0 +|/ 29704814 29705891 29705268.5 29701363 29706156 + gene protein_coding_gene FALSE TRUE AT1G78960.1 ATLUP2 (Arabidopsis thaliana lupeol synthase 2); lupeol synthase Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative [Arabidopsis thaliana] (TAIR:AT1G66960.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to pentacyclic triterpene synthase [synthetic construct] (GB:AAG41762.1); similar to beta-amyrin synthase [Medicago truncatula] (GB:CAD23247.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.0566269057536951 0.594840626956452 0.56411480420643 1 -0.434000256738388 9.34438445715213 0.0566269057536951 0.0824058276612653
AT2G26140_at 8.27167520724667 8.38342491056338 8.42355752164518 8.47118758717173 8.79946731971592 8.12462738252244 8.8062496062995 8.62315497967292 7.77007911885194 7.84150671532864 7.87066307509828 8.10341345633127 8.22561206659152 7.9194283371374 7.75472451443807 8.29514296167035 7.79308559860504 7.80837772769527 7.71037581197799 0.173183263846595 0.177684636947229 0.183913146105043 0.173183263846595 0.17786263211954 0.188067879489596 0.174522438085425 0.173183263846595 0.191114832819273 0.174887512425195 0.177866468129484 0.177899491358197 0.179975886957671 0.195851557517615 0.181084872600292 0.178249115779862 0.184305673865539 0.177084616305898 0.173183263846595 2 2 - 11139137 11139548 11139343.091 11138656 11142402 - gene protein_coding_gene FALSE TRUE AT2G26140.1 FTSH4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FtsH protease that is localized to the mitochondrion similar to FTSH11 (FtsH protease 11), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G53170.1); similar to DNA repair protein RadA; Peptidase M41, FtsH [Medicago truncatula] (GB:ABE94111.1); similar to ftsH-like protease [Pisum sativum] (GB:CAG25608.1); similar to putative FtsH protease [Lycopersicon esculentum] (GB:AAP32310.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0654512643139564 0.594734554125154 0.564183200730981 1 -0.434061998475688 16.3605646556458 0.0654512643139564 0.122818737419417
AT1G22960_at 2.06333423957057 2.16401493799373 2.15852465992921 2.29089333618698 2.00084768721912 2.08869104139141 2.21542461083660 2.2482619992132 1.88053983119563 1.59890341410028 1.54049840555592 1.59295575743351 1.36097409545821 1.76783512727510 1.47767940387076 1.87798433594419 1.85703148499982 1.74659088769833 1.66203241630901 0.219234685838852 0.216543704752979 0.227715975919296 0.220333080866817 0.221266937126690 0.22855767164863 0.228334589590006 0.223765124644752 0.220103999521939 0.235569976870308 0.222555194243603 0.218002551776208 0.221357703532335 0.225729357430643 0.221358524891512 0.219233967992990 0.218922356714870 0.221236076886031 0.2167091594952 1 1 - 8128140 8128641 8128447.182 8128075 8130231 - gene protein_coding_gene FALSE TRUE AT1G22960.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G01110.1); similar to Os07g0300200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059422.1); similar to Os12g0152600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066176.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE84479.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0495756494886691 -0.593926594517849 0.564704328618275 1 -0.434531950014615 3.83700851794983 -0.0495756494886691 0.0330406714340322
AT3G17130_at 2.73990871830562 2.51388510197798 2.29627644524643 2.34771806201883 1.98264214610427 2.22436818434592 2.36579751396861 3.2990470583295 2.76213689138393 2.52061580862328 2.80547690790907 3.31986003154697 2.85016984593534 3.18884330970436 3.70471560840251 3.25115083691753 2.89810801875047 3.26101600085180 3.11611449886538 0.208817542321203 0.214516951399981 0.221272213363020 0.212904290277889 0.220885317710078 0.219313116270941 0.212705863630915 0.213302782546712 0.226164717917728 0.212801274711248 0.217918250760729 0.214433703300517 0.215570503038175 0.207580096157328 0.217088658058975 0.212156944595906 0.217041129125544 0.212346994735137 0.208109453142329 3 3 - 5844523 5844950 5844762.818 5844501 5845052 - gene protein_coding_gene FALSE TRUE AT3G17130.1 invertase/pectin methylesterase inhibitor family protein similar to C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1), pectinesterase inhibitor [Arabidopsis thaliana] (TAIR:AT1G47960.1); similar to Pectinesterase inhibitor [Medicago truncatula] (GB:ABE82784.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.0783066091692505 -0.593822217518064 0.564771670300121 1 -0.434592617681876 5.45097538860037 -0.0783066091692505 0.171587788087026
AT1G74870_at 1.61689062959488 1.95936229686304 2.02028743450149 1.74457412276291 1.83522375878778 2.02290279467778 1.41067642834046 1.90176100502286 1.45718931774871 1.58334710149981 1.85561948721238 1.51433280424676 1.9410224083609 1.60560686684459 1.52885230077456 1.56021584998278 1.61585494227296 1.43217841007689 2.01937152158448 0.201666430908677 0.203379602502839 0.207541862488131 0.206369646092317 0.202326866211925 0.209087499968959 0.201741415892418 0.202397410559320 0.203531900222196 0.208905690198209 0.215491300884019 0.206296210405594 0.209299028902448 0.205506035943151 0.205115150957791 0.199478724935682 0.21163236523953 0.208107314503707 0.201772798391657 1 1 + 28131337 28131897 28131666.091 28130589 28132124 + gene protein_coding_gene FALSE TRUE AT1G74870.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G48070.2); similar to hypothetical protein LES1_20t00015 [Lycopersicon esculentum] (GB:ABI34275.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE86954.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0643244205854941 0.593741556223636 0.564823714168737 1 -0.434639494116829 3.47313299081847 0.0643244205854941 0.118601439790998
AT1G08370_at 6.90156244253556 7.14405105157536 6.84081364765524 7.10910351504938 7.46532216904798 6.6575909086181 6.94010108107106 6.8972366717333 6.84673857998886 5.98304594645465 5.85231162032483 5.93322844377792 6.37846102997175 6.25715385235793 5.89821647199522 6.25270365912893 6.00127426012654 6.27347253618216 6.06909964437807 0.212302543550141 0.216698826765008 0.227847688357956 0.221897716479154 0.220413797292064 0.227788135137523 0.225371884477311 0.217885107493072 0.224858651424083 0.212302543550141 0.221938631183105 0.227797954623325 0.217756818786807 0.219376969550684 0.217403235753069 0.212302543550141 0.217007178553505 0.225578546276685 0.212302543550141 1 1 + 2639527 2640214 2639936.636 2638178 2640551 + gene protein_coding_gene FALSE TRUE AT1G08370.1 DCP1 (DECAPPING 1) Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. Identical to mRNA decapping enzyme-like protein (EC 3.-.-.-) (DCP1 homolog) [Arabidopsis Thaliana] (GB:Q9SJF3;GB:O64895); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to unknown [Solanum tuberosum] (GB:ABB02626.1); contains InterPro domain Dcp1-like decapping; (InterPro:IPR010334) -0.0731527871717537 -0.593176207892807 0.56518855931154 1 -0.434967880484392 13.1972130814976 -0.0731527871717537 0.153331444499169
AT1G66720_at 1.64499295900128 1.21314330366052 1.20373485203026 1.5020751103416 1.48782897009063 1.22230525953140 1.00543289390111 1.24304281844351 1.42813074059049 2.01177849008896 1.93743090640338 1.77208767785220 2.08175214406363 1.53460447901969 1.58321330181019 1.75729143634039 1.73854785598262 2.31151111323459 1.93758430633209 0.181535933236678 0.173442040347254 0.174708645618174 0.173792545866997 0.179626288892109 0.174848722277004 0.181544108548670 0.177502987484841 0.177870650555257 0.175926850687674 0.17369533981019 0.173469851381119 0.174881227340959 0.173768750149069 0.175913775779783 0.176021473464268 0.176102965975040 0.176058992658299 0.177541568854322 1 1 + 24885454 24886101 24885837.455 24884843 24886143 + gene protein_coding_gene FALSE TRUE AT1G66720.1 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G66700.1); similar to AtPP protein [Brassica napus var. napus] (GB:CAB89183.1); contains InterPro domain SAM dependent carboxyl methyltransferase; (InterPro:IPR005299) 0.0621950364573432 0.593091261777549 0.565243390112826 1 -0.435017196791884 3.13134587587946 0.0621950364573432 0.109785741191224
AT3G12110_at 1.99103903221072 1.97201645372547 1.51562908790560 2.01467967917132 2.15594439985948 2.32196296527016 2.57847650704983 3.13839081316139 4.90424558483545 3.49820733378143 5.85285922536165 4.69489318361658 3.78251014403738 4.71561398452602 5.35513778478668 3.77846423703907 3.18132801721550 4.7881028867796 3.49288545875763 0.313180257380688 0.300786167572876 0.30317294597252 0.308969629070613 0.299775042445406 0.301789748914341 0.299775042445406 0.299775042445406 0.300350571462398 0.300950333737525 0.310597106202618 0.308543265033044 0.299775042445406 0.301733576385712 0.308555044087417 0.299775042445406 0.303158678478076 0.306804027524373 0.299775042445406 3 3 + 3858957 3859577 3859173.545 3857849 3859804 + gene protein_coding_gene FALSE TRUE AT3G12110.1 ACT11 (ACTIN-11); structural constituent of cytoskeleton Encodes an actin that is expressed predominantly during reproductive development. Identical to Actin-11 (ACT11) [Arabidopsis Thaliana] (GB:P53496); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to actin [Nicotiana tabacum] (GB:BAD27408.1); similar to Actin-97 (GB:P30171); similar to actin 2 [Torenia fournieri] (GB:ABG49392.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.0677871109884629 0.593011640299903 0.56529478663357 1 -0.435063415847224 6.45288060498349 0.0677871109884629 0.132979818839327
ATMG00510_at 2.14618376850520 2.05219794003123 1.92431288943864 2.52620183899517 2.79876933973308 2.21867540198891 2.74948639471114 1.83358200554048 2.72847483722161 2.81085989187723 2.26085156775163 2.60464043845215 2.32029438672741 2.20719019436950 2.12951898062238 2.44205141961359 2.20503335336010 2.79507082353931 2.63379368769349 0.199147662451602 0.201976003122620 0.197738988709443 0.201650512789363 0.203204294506230 0.202864687547925 0.202311475296228 0.201185432715309 0.200629756794545 0.19930743884402 0.200686207264516 0.200939390330413 0.197738988709443 0.20171662994333 0.209867556315412 0.203100650026701 0.197738988709443 0.199432704412706 0.203495111684679 M 0 / Inf -Inf NA 132071 138153 + gene protein_coding_gene FALSE FALSE ATMG00510.1 NADH dehydrogenase subunit 7 similar to NADH dehydrogenase subunit 7 [Zea mays subsp. mays] (GB:YP_588347.1); similar to NADH dehydrogenase subunit 7 [Oryza sativa (indica cultivar-group)] (GB:YP_514643.1); similar to NADH dehydrogenase subunit 7 [Nicotiana tabacum] (GB:YP_173488.1); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 49kDa; (InterPro:IPR001135); contains InterPro domain NADH dehydrogenase I, D subunit; (InterPro:IPR010219) -0.0910837015171664 -0.593009540367948 0.56529614219699 1 -0.435064634747414 4.82865496461062 -0.0910837015171664 0.215207475643726
AT1G11590_at 1.13486117854367 1.00202108184490 1.03619234840583 0.900117110135027 0.717451752570602 1.33416776088014 0.920098624879532 1.16109067378622 1.17687605068176 0.964637746163741 1.46501206354266 0.859200604661487 1.33527977288201 1.25951988645568 1.25021437652938 1.57051462364157 1.37654340525313 1.26418312394480 1.19221127982033 0.207735251751848 0.207540661097282 0.208400764062608 0.212370464562665 0.206764562002376 0.213376687233680 0.214462874212648 0.211474558203327 0.206764562002376 0.208502769527159 0.214491518836905 0.208728950079187 0.213563728889452 0.209871309914139 0.219010338197603 0.21056260116016 0.213572454438942 0.216310950398551 0.215436145636202 1 1 + 3894139 3894584 3894304.545 3892580 3894677 + gene protein_coding_gene FALSE TRUE AT1G11590.1 pectin methylesterase, putative similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G27980.1); similar to pectinesterase [Arabidopsis thaliana] (TAIR:AT4G03930.1); similar to Pectinesterase-1 precursor (Pectin methylesterase 1) (PE 1) (GB:P14280); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.0643905715631084 0.592994696334615 0.565305724476778 1 -0.435073250814178 2.23015015354863 0.0643905715631084 0.119216799508763
AT1G77340_at 1.67447285107240 1.50285298453816 1.45053816652325 1.93916838607688 1.55082734322909 1.73518544266113 1.51224812266161 1.55971462383092 1.92549792638428 2.08153823876752 1.73685370488952 2.05842757260527 1.58618974877653 1.54603036196224 2.24067327489344 1.68511691300425 1.85759033690403 2.37000690801096 2.32225299118717 0.161166341522479 0.165056172770040 0.162907043798491 0.165048467714892 0.167828901132122 0.164110694348965 0.163530119760125 0.161668834943272 0.160359069727758 0.166765702085754 0.160661627022941 0.161743236613520 0.168879097995916 0.164695307768928 0.161447763279794 0.160569145622085 0.174095571982024 0.16661724735539 0.160860080308988 1 1|0 -|/ 29073237 29073939 29073605.333 29073237 29074722 - gene protein_coding_gene FALSE TRUE AT1G77340.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65560.1); similar to Os08g0307200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061504.1); similar to Os06g0690900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058418.1); similar to putative fertility restorer homologue [Oryza sativa (japonica cultivar-group)] (GB:BAD30981.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.059022130192697 -0.592660230895134 0.565521655848473 1 -0.435267334511525 3.61306306744607 -0.059022130192697 0.0954869543815369
AT1G60630_at 1.75831051882985 1.38134774356594 1.37393458485465 0.97370466888809 1.20090001485577 1.78029832377733 1.13439274927822 0.798030502298557 1.57954076853370 1.11433181074897 1.25011691233838 1.35384215492951 0.882600110096162 0.841157887519231 1.17765607057477 1.23159506147387 1.04795797422269 1.00981855054978 1.22977044494910 0.210316569598473 0.213973822652380 0.205415100241671 0.210847762795896 0.206609291772311 0.204589924535729 0.205851497216136 0.211091330386655 0.215143397781192 0.207885201013745 0.210663639556526 0.207583894403888 0.208979113209436 0.213008277651874 0.205895400202445 0.204585766782460 0.205885382131500 0.221950281605252 0.219404572433473 1 1 - 22338471 22338953 22338725.273 22338327 22340573 - gene protein_coding_gene FALSE TRUE AT1G60630.1 leucine-rich repeat family protein similar to ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G10850.1); similar to putative receptor kinase [Malus x domestica] (GB:ABA82080.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0721744491316945 -0.592563201809488 0.56558430644044 1 -0.435323619462659 2.50372693743871 -0.0721744491316945 0.149982283095648
AT4G37990_at 3.35769509596898 2.86923049475605 3.62190980523809 3.1777859873165 2.66487260019492 3.09812697158187 3.24628371058905 3.27810189422246 3.13727398132989 3.34666611153006 3.08087075665358 3.43282667839668 3.46139491731316 3.41439118323357 3.28797255145630 3.08548652017312 3.10762387902568 3.77056235191256 2.95288845272715 0.219153845710286 0.220463227033202 0.220513272073091 0.214645465255754 0.220551110213409 0.220045054105984 0.219333661956581 0.216460904514939 0.226924648132533 0.221618976524144 0.215506184907733 0.216097118741827 0.220306485328296 0.224653655739187 0.216608887245798 0.218374000833133 0.214635823699667 0.223758070525191 0.216260870790581 4 4 + 17856661 17857318 17856926.455 17855886 17857633 + gene protein_coding_gene FALSE TRUE AT4G37990.1 ELI3-2 (ELICITOR-ACTIVATED GENE 3) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity. Identical to Probable mannitol dehydrogenase 2 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 2) (ELI3-2) [Arabidopsis Thaliana] (GB:Q02972); similar to ELI3-1 (ELICITOR-ACTIVATED GENE 3), oxidoreductase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37980.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:Q9ZRF1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.0686888158867932 0.592452980343653 0.565655479826937 1 -0.435387546663902 6.40212612996663 0.0686888158867932 0.136764147113652
AT4G05180_at 13.7534566150537 13.9110772461182 13.8388924040885 13.7472475190606 13.9591965579866 13.7612447127521 14.1057188047380 14.1205654873117 14.512558675061 14.3375444846339 14.7359855446144 14.7390198101725 14.7139281519207 14.6720027027276 14.6315544251212 14.5793195156894 14.3597164870159 14.7008708863532 14.3313103765202 0.0571018178812126 0.0546653986323433 0.0577507852419577 0.0562747771718452 0.0556407674135514 0.0616446837032303 0.0556588429569805 0.055285910349479 0.05918624803469 0.0544816540353139 0.0540001903281874 0.0542752344751282 0.0548342085535044 0.0541023661588119 0.0578804510204043 0.0540512668040978 0.0583324568081476 0.0558639811124969 0.0548125340407608 4 4|0 -|/ 2672360 2673021 2672720.333 2671820 2673241 - gene protein_coding_gene FALSE TRUE AT4G05180.1 PSBQ/PSBQ-2 (photosystem II subunit Q-2); calcium ion binding Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. Identical to Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (PSBQ2) [Arabidopsis Thaliana] (GB:Q41932;GB:Q9M0X7); similar to PSBQ/PSBQ-1/PSBQA, calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G21280.1); similar to Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (GB:P12301); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) 0.0508429692733658 0.592404410624712 0.565686844347103 1 -0.435415713029313 28.4173520196505 0.0508429692733658 0.0466440605866905
AT3G08030_at 9.03719529817335 9.56934381067444 8.1073206786101 8.39287284888428 9.38828007441937 9.4615355727539 9.36114307195403 9.56306148485899 9.71081250199745 9.30281655717818 10.2276300694082 10.3230626752901 10.0033971643341 9.73090969100216 10.7489003164366 9.33749885999098 9.46583525864645 9.9534075073857 9.64653201808367 0.121979716454715 0.115993753396868 0.140605531777006 0.136147379351356 0.11811371193399 0.119640527734937 0.116316631680381 0.121046319891160 0.126683895734988 0.118215827184836 0.117714415425190 0.116199770299324 0.116134517689943 0.121112089960869 0.118818436382828 0.115993753396868 0.125443952942452 0.118546219732313 0.115993753396868 3 3 + 2564920 2565800 2565487.182 2564039 2566008 + gene protein_coding_gene FALSE TRUE AT3G08030.1|AT3G08030.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.062370227844801 -0.592277600648168 0.565768738018808 1 -0.435489242031029 18.8737027143235 -0.062370227844801 0.110925136521576
AT4G38190_at 2.20996287688071 2.75736694153938 2.69680420924464 2.43058428281912 2.62742266380896 2.49331869476837 2.72158842921802 2.46862272267762 2.94709412140764 2.59452606361264 2.25040092709684 2.42616756740762 2.7875589302011 2.63059355458730 2.89516247594425 2.43514201249520 3.04980410502918 2.87150412742708 2.91297534785334 0.19839561252719 0.198465448309785 0.203203101850526 0.191123327496274 0.198888464372072 0.193183723990916 0.194186612844112 0.20302378871713 0.191763347821396 0.192973681685569 0.196963004320774 0.190706991101405 0.193816132195814 0.190964200291996 0.192587469971604 0.190910908268379 0.198601670886256 0.189485340562274 0.192694828812937 4 4 - 17910110 17910649 17910395.273 17909913 17913635 - gene protein_coding_gene FALSE TRUE AT4G38190.1 ATCSLD4 (Cellulose synthase-like D4); cellulose synthase/ transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLD5 (Cellulose synthase-like D5), cellulose synthase [Arabidopsis thaliana] (TAIR:AT1G02730.1); similar to CSLD3 (CELLULOSE SYNTHASE-LIKE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G03050.1); similar to ATCSLD2 (Cellulose synthase-like D2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16910.1); similar to TPA: TPA_exp: cellulose synthase-like D3 [Oryza sativa] (GB:DAA01756.1); similar to cellulose synthase-like protein D4 [Populus tremuloides] (GB:AAO03579.1); similar to cellulose synthase D-like protein [Nicotiana alata] (GB:AAK49455.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.063629789176479 -0.592123567284274 0.565868221260352 1 -0.435578536383371 5.29395396436032 -0.063629789176479 0.116410591338853
AT3G50910_at 6.5898819135841 6.83600783084947 7.79368434930354 7.48052929801481 6.30415896402025 6.66219666394601 6.78401498672231 7.15932095199453 5.49103547890718 5.84818501624103 5.35049643765805 5.40178706607862 5.26905019377098 5.71223998807901 5.4220226988754 6.42869196369848 5.94100743330604 5.39226155792629 5.78113736348956 0.254041603724867 0.253669885130612 0.250891265515676 0.251678433797496 0.250891265515676 0.256997500045635 0.251998725791187 0.250932776644163 0.258804863111076 0.250891265515676 0.251568127421033 0.255150316430334 0.251593491221642 0.263023988257056 0.255522053182297 0.250891265515676 0.250891265515676 0.253937488638433 0.252166728920381 3 3 + 18932438 18932937 18932690.455 18930494 18933219 + gene protein_coding_gene FALSE TRUE AT3G50910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66480.1); similar to hypothetical protein [Thellun (GB:ABB45854.1); contains domain no description (G3D.3.40.50.300) 0.0628723062892012 0.592119215202399 0.565871032214288 1 -0.435581059004713 12.6119646799561 0.0628723062892012 0.113174259274042
AT3G10350_at 9.4562312304096 9.31738754555876 9.6596971503383 9.52458207984118 9.7183548993202 9.40955210928864 10.2065165112698 9.9021924189259 9.4391534443655 9.49005406160205 9.41824224667625 9.23691639564529 9.45004757660783 9.4079896285355 9.38576261425273 9.69258912848236 9.75525987424927 9.34858261415652 9.36679566219112 0.0882777465884396 0.0847905640917118 0.0887431699846878 0.0868091489228695 0.08303483305675 0.088507083868737 0.086131197964921 0.0844538121953127 0.0885764537905727 0.0830229154588075 0.0842778639750654 0.0857770674191632 0.0841225107830255 0.0896785264022313 0.0895066321651432 0.0830229154588075 0.0833283494072032 0.0863131776609673 0.0837615846153714 3 0|3 /|+ 3209699 3210649 3210301.9 3208244 3211299 + gene protein_coding_gene FALSE TRUE AT3G10350.1 anion-transporting ATPase family protein similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD15543.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348) -0.0563063315355607 -0.591920944044464 0.565999101141354 1 -0.43569596567022 19.0962766510584 -0.0563063315355607 0.0821792791392666
AT3G13480_at 7.07116797792779 7.61256548187768 7.50406614881526 7.76118683660491 8.00146429402115 7.101856784152 8.32717416873674 7.8106317590768 6.80010481199312 7.7231103907289 7.57054914284056 7.0565404371473 7.28296886400624 7.62419339972132 7.00292323907942 7.80211501687666 7.68285320523378 7.3486706776438 7.93223404296812 0.230986511416459 0.226089840195607 0.236219806402876 0.22509348683755 0.226276740908023 0.232754139107464 0.228077867635092 0.236834384536886 0.250233489950080 0.224750755899291 0.230937177556466 0.225558907446216 0.220226411201720 0.224955938568034 0.225465121664989 0.228079889026261 0.226772983269691 0.225298479086121 0.224495200492662 3 3 - 4393089 4393760 4393456.4 4392963 4393819 - gene protein_coding_gene FALSE TRUE AT3G13480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55475.1); similar to Os03g0795100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051545.1) -0.0885196658755845 -0.591871902057848 0.566030781195252 1 -0.435724382072707 15.1020149295925 -0.0885196658755845 0.207328734785843
AT3G26110_at 2.37839668096717 2.26594228956426 2.67469927464979 2.65521719143086 1.94864468224661 2.54171600526525 2.04309972191693 2.70787122491723 3.02055402335364 2.27059389426120 2.28509488677313 2.40124322155841 2.80203919741398 2.82912836375819 3.18845497708099 2.16736304859430 2.83452826563892 2.53063336470598 2.47577425502033 0.213019283109389 0.215226563880411 0.214279747809138 0.215621507711514 0.220431008953080 0.216391028044908 0.224483541728165 0.223836457364006 0.210721477662473 0.207647371562398 0.215599626912844 0.215564250050946 0.210565906138231 0.212246116840133 0.224052063079402 0.210028058291341 0.220920250344405 0.219159112588885 0.212913873998372 3 3 + 9542924 9543160 9543054.182 9542720 9543351 + gene protein_coding_gene FALSE TRUE AT3G26110.1 similar to BCP1 (Brassica campestris pollen protein 1) [Arabidopsis thaliana] (TAIR:AT1G24520.1); similar to Anther-specific protein BCP1 (GB:P41507); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050) 0.0735392086010791 0.59169480579608 0.566145189617031 1 -0.435826978686082 5.01134074548753 0.0735392086010791 0.155429707632533
AT3G20430_at 6.04973294689208 5.87178587679022 6.3302083389086 6.03552403476659 6.48446570689136 6.04363970433548 6.30267324443708 5.62807475381378 5.66258292300598 5.92339882430215 5.53263521697898 5.98911043855737 5.4944004773549 5.66230069054008 5.57252447816 5.53481718384305 6.33373877877943 5.8839444205382 6.01144019977618 0.1809192540793 0.1816306684158 0.184366886441922 0.185160666401946 0.180685689916343 0.183988411567696 0.189853404794441 0.191231993762334 0.189914382904206 0.180991780041366 0.183420336324291 0.178355093642226 0.183006864580992 0.179214323957836 0.182053532416124 0.186725355168239 0.187921479865462 0.188938732724646 0.184343086294914 3 3 + 7121726 7123053 7122525.818 7121486 7123179 + gene protein_coding_gene FALSE TRUE AT3G20430.1 similar to Os01g0559200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043341.1); similar to Mediator of U snRNA nuclear export PHAX (ISS) [Ostreococcus tauri] (GB:CAL53287.1); contains domain FAMILY NOT NAMED (PTHR13135) 0.0725096928207227 0.591641668363647 0.56617952014335 1 -0.435857757038551 11.9013837139988 0.0725096928207227 0.151649085232229
AT1G66120_at 2.25123625594764 2.24321315848316 2.45425408544847 2.67684171255931 2.01874885595989 2.35448189648648 2.27042334751270 2.50077071247054 2.80243659408202 2.61807947606302 2.54008853464488 2.19504529834037 2.40819054526741 2.45863926555142 2.41863331817745 2.20144836167938 2.6200543873006 2.49544126532112 2.34550496593350 0.181260171330417 0.178535719015164 0.177565860881141 0.180064847443291 0.177565860881141 0.180318826066997 0.182834533116239 0.190913141373119 0.181326685718419 0.186172775834786 0.178794825424008 0.177565860881141 0.185302518984568 0.188318762880504 0.187967212169067 0.184746371024534 0.181717666388795 0.182152589480268 0.185366549342030 1 1 + 24617888 24618313 24618133 24616283 24618468 + gene protein_coding_gene FALSE TRUE AT1G66120.1 acyl-activating enzyme 11 (AAE11) similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G65880.1); similar to acyl-activating enzyme 12 (AAE12) [Arabidopsis thaliana] (TAIR:AT1G65890.1); similar to Os09g0555800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063895.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); similar to Os03g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048852.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.0559051438237446 -0.591355173054805 0.566364635975956 1 -0.436023656891201 4.84917940347261 -0.0559051438237446 0.0803141837715848
AT3G25190_at 1.70034911843646 2.03365936298137 1.88694159717563 2.02931697393058 1.44114901919714 2.07604660502184 2.0240058292378 2.20349065677146 2.23691881847619 1.95954924987206 1.93844576326972 2.04459437135527 2.06392085499031 1.87918786711319 1.75946713908382 1.85456294551648 2.20507106687600 2.33756890526803 1.83990250059066 0.200747264445909 0.202014379120341 0.199940509793717 0.202045098897577 0.205599919607260 0.201104303620360 0.204830455364363 0.200517851371992 0.201197663833046 0.211069493991718 0.212637125762123 0.209768297651517 0.202619922907444 0.204183689697816 0.204342013479211 0.207428343775646 0.210780964484867 0.206348996900515 0.201359087449544 3 3 + 9175846 9176811 9176347 9175694 9177013 + gene protein_coding_gene FALSE TRUE AT3G25190.1 nodulin, putative similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43660.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) -0.0668919259105045 -0.591138087527281 0.566504925529406 1 -0.436149313929958 3.93560783892590 -0.0668919259105045 0.130271915847494
AT2G36720_at 7.64812947698265 7.40024821268713 7.66021503286354 7.21148714594351 7.77589452173925 7.52254978890423 7.55212931818727 7.25125825116573 6.6062940267778 6.98196514744747 6.38014530097715 7.1187309736745 6.64803013545009 6.66283363909631 6.51629117089349 7.02037668846379 6.85839942070078 6.61742901989767 7.20850991371523 0.192193534980277 0.187193262471213 0.188004650099684 0.194600345057429 0.191210971659607 0.192662899002916 0.191969252876044 0.196712813707484 0.199346326386947 0.205915578093998 0.200389631706741 0.1908618222941 0.192548970946679 0.199957233103112 0.192341219330104 0.187529597087778 0.205258198611437 0.200370875267222 0.194941237316451 2 2|0 +|/ 15404863 15406187 15405599.2 15400150 15406497 + gene protein_coding_gene FALSE TRUE AT2G36720.1 PHD finger transcription factor, putative similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G27980.1); similar to putative PHD zinc finger protein [Ipomoea trifida] (GB:AAS79577.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0624407556978366 -0.590999892329846 0.566594242844822 1 -0.436229283935229 14.3327569217047 -0.0624407556978366 0.111819132799070
AT3G61930_at 2.79487391853999 2.11055209567382 2.90140273976316 3.11795230558794 2.45558308196885 2.61491068280373 2.98897485285353 2.5863292138857 2.92279176871153 3.00325155977194 2.48196976429038 2.64707625949285 2.48020806854593 2.86390170301979 2.3018886313262 2.29786652758704 2.77327646313891 2.82910826827122 2.70736170523928 0.216660525198791 0.211309944356182 0.224483370130521 0.220173064955510 0.219236695181788 0.207155719346362 0.21592459445529 0.226078626364223 0.206259579570156 0.212421716653933 0.210846625022275 0.214127668665497 0.213057755557271 0.22187398694668 0.2162835776184 0.213524611523132 0.206259579570156 0.206259579570156 0.208127793016642 3 3 + 22946584 22946873 22946742.091 22946485 22947156 + gene protein_coding_gene FALSE TRUE AT3G61930.1 unknown protein -0.0705550174529409 -0.589965454492973 0.567263058219759 1 -0.436827332335988 5.4274291806929 -0.0705550174529409 0.145066767734776
AT3G56660_at 1.32315297584845 1.66287021824731 1.96554242048544 1.48276280602902 1.82009780290560 1.8276895532334 1.62398476562159 1.09313897671921 2.38688763937299 1.79664400844707 2.14475969036197 1.74975503206511 1.82166706254254 1.59637821729196 1.59614023713778 1.67075552217087 2.18928506444761 1.74993389669907 1.89438179416701 0.198776709047696 0.191593677122525 0.194874189891654 0.188175702961871 0.188356666543154 0.190911667982699 0.190762538399339 0.193441845995468 0.206859760111341 0.189701155717561 0.199593828793582 0.195532197211973 0.191284779183452 0.188175702961871 0.202529149998100 0.188598185027824 0.193342415022310 0.195340635993631 0.188175702961871 3 3|0 -|/ 20997229 20997889 20997520.8 20997196 20999192 - gene protein_coding_gene FALSE TRUE AT3G56660.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G40950.1); similar to putative bZIP transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAT85257.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0685498022824111 0.589861023846595 0.567330601827766 1 -0.436887653377431 3.52030768372057 0.0685498022824111 0.137394815285348
AT4G35590_at 2.02300822633377 2.01958224769517 1.93783801430139 2.29273600880560 1.60332754906774 1.94354789375704 1.53936277349154 1.88771435891334 1.83403485558870 1.80844522740287 1.94680660857875 2.01820990492250 2.00414754053973 1.69012815833812 1.62093134586473 1.8123934946187 1.90641823630410 1.85031392549084 1.79315394704102 0.205950354337352 0.196135080741765 0.197052720524826 0.198856198984397 0.207229209318990 0.198335173516144 0.204154353222230 0.200695393664845 0.197350099068109 0.207006005950291 0.198188818438573 0.203753438586188 0.210615613793171 0.206094232635185 0.196135080741765 0.202504733213818 0.198483160831203 0.206426015196190 0.209687354913759 4 4|0 +|/ 16894044 16894837 16894405.2 16892914 16894870 + gene protein_coding_gene FALSE TRUE AT4G35590.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18790.1); similar to OSJNBa0017B10.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03088.2); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37262.1); similar to Os04g0564000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053566.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035) 0.0606180533479044 0.589802049024206 0.567368747482827 1 -0.436921713904076 3.73991296496722 0.0606180533479044 0.104273589571672
AT3G12370_at 5.51923397619107 5.9359047077794 5.2018958781556 5.46747654049334 5.60895139872635 6.34185572996449 6.36218367964275 6.17492418026825 4.60398522839867 4.76994484563053 4.80141972825974 5.36002613720567 4.80006030534112 5.05653530137758 5.14461912815478 4.98153516275567 5.83743699976837 4.38004228135169 4.29132671637758 0.231740608234477 0.230535237474354 0.232105934665154 0.236154888630019 0.236484248539326 0.23024236584375 0.233290040366225 0.23024236584375 0.240786581715829 0.230401316418757 0.23024236584375 0.23374381176628 0.23024236584375 0.236127855146926 0.23731114672089 0.230817409173003 0.232750915615078 0.246948889778873 0.235702323218464 3 3 - 3937486 3937903 3937689.091 3937197 3938101 - gene protein_coding_gene FALSE TRUE AT3G12370.1 ribosomal protein L10 family protein similar to ribosomal protein L10 family protein [Arabidopsis thaliana] (TAIR:AT5G13510.1); similar to 50S ribosomal protein L10, chloroplast precursor (CL10) (GB:O80362); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790) 0.0735535172945725 0.589778534849826 0.567383957137322 1 -0.43693529347677 10.6267007500672 0.0735535172945725 0.156359697781411
AT4G05410_at 3.56216480547365 3.60482706410659 3.81573628257487 3.86179607899814 3.10373267022054 2.97451030957826 3.80824495333064 3.54916017270070 2.59098848829181 2.41607947704010 2.79430564272720 3.01051222080028 2.74403545440514 2.21696306747002 3.1874358764324 2.73343631488992 2.97027851312269 2.26678161674106 2.33082450807778 0.213490077158918 0.211565097012896 0.214939523451507 0.206570701479883 0.208093101614450 0.209684545964131 0.211486484461305 0.207559350083241 0.218878616347405 0.222117667101083 0.209401226759069 0.211032067526930 0.217479457434317 0.212531989461577 0.206570701479883 0.206570701479883 0.213294451456903 0.221795268540731 0.207900865805645 4 4|0 -|/ 2743238 2744246 2743842.4 2742929 2745624 - gene protein_coding_gene FALSE TRUE AT4G05410.1 transducin family protein / WD-40 repeat family protein similar to EMB2271 (EMBRYO DEFECTIVE 2271), nucleotide binding [Arabidopsis thaliana] (TAIR:AT4G21130.1); similar to Os03g0625900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050698.1); similar to WD40 repeat-containing protein (ISS) [Ostreococcus tauri] (GB:CAL54444.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0511745084802094 0.589643605865097 0.567471237458478 1 -0.437013205981546 6.12823791518634 0.0511745084802094 0.0512676932066759
AT3G52620_at 1.83369059112095 1.51911280051966 1.64944251111203 1.84881191519172 1.35969328948522 1.67734475710443 1.6388629464351 1.51287147341078 1.87460994021434 1.75994618153832 1.88524745913577 1.77760537712648 1.83793675227567 1.87131582440137 2.21470402619518 1.58377488495406 1.91191106388526 1.86559538480486 1.65150325836103 0.176024908224986 0.181919400145603 0.182024852004695 0.185574414433475 0.184876319650736 0.182176929679711 0.190793718300109 0.184697700911825 0.183173544568838 0.185625484930395 0.181639324037111 0.176950426570436 0.200320120664577 0.181408562757075 0.181315829597804 0.17765898250235 0.184887414557296 0.183944087172929 0.185699877935744 3 3 + 19524091 19524491 19524282.364 19524066 19524618 + gene protein_coding_gene FALSE TRUE AT3G52620.1 unknown protein 0.057090109288916 0.58950635010932 0.567560030416362 1 -0.437092444968124 3.44524435553177 0.057090109288916 0.0874711558923737
AT1G33230_at 7.56434595810504 7.88759845567811 7.25337588362007 7.49030008952217 8.18081272415326 7.71455660602507 7.8410160258266 7.84568735575223 6.7373245322956 7.17894698579068 7.36967033184597 7.44757938412411 7.17583550810718 7.43127680278819 7.02051437412494 7.53438872005348 7.2934882808554 6.8366184104866 7.13375057424953 0.189156142646138 0.182449167513359 0.183840072647792 0.181511514409504 0.188441998658845 0.189263252256959 0.184986212173865 0.180784936171328 0.185531949003652 0.185719160542137 0.181785142805551 0.181986492379700 0.187042528463714 0.187451273725853 0.178648303624937 0.178272495170116 0.18961534384437 0.198502092954814 0.188856059193549 1 0|1 /|+ 12047658 12049648 12048838.111 12046621 12050046 + gene protein_coding_gene FALSE TRUE AT1G33230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10430.3); similar to Os02g0106800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045630.1); similar to Os08g0152800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061007.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL54240.1); contains InterPro domain TMPIT-like; (InterPro:IPR012926) 0.0610484113796401 0.589406470785088 0.567624648737959 1 -0.437150095378639 14.8623843909987 0.0610484113796401 0.106402846234905
AT4G19660_at 8.40823045679073 8.73181624470025 8.52050344650467 8.96478836532522 8.17788797841622 8.0916811860025 7.75772673464499 7.28768159584521 7.67038866597415 7.1023848789951 6.89939147504443 7.06836802943638 6.89635743630566 7.00871631946908 6.80547293971608 7.26075762873214 7.47168302022156 7.5079617748749 7.35514307812454 0.179850015578394 0.182010575705222 0.184991175001636 0.182597348342455 0.182141342452714 0.182040533439102 0.178469230680550 0.178469230680550 0.193252812407479 0.180831534984938 0.183229638290937 0.186360215871924 0.184509851620469 0.188612828532695 0.187477752115539 0.18089098927658 0.183455509776724 0.200821262417989 0.18306243048103 4 4|0 -|/ 10696330 10696931 10696624.111 10696276 10698253 - gene protein_coding_gene FALSE TRUE AT4G19660.1 NPR4 (NPR1-LIKE PROTEIN 4); protein binding Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. similar to NPR3 (NPR1-LIKE PROTEIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G45110.1); similar to ankyrin repeat BTB/POZ domain-containing protein [Populus trichocarpa] (GB:ABF48718.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.0656089281719785 0.589040359926406 0.567861543679674 1 -0.437361336825655 15.4879448938652 0.0656089281719785 0.126041652446490
AT1G05550_at 1.60821054573204 1.64719134129535 1.71691389619559 1.99205158689294 1.16308053296900 1.70272554572985 1.56598243139413 1.60433245005853 2.04012695075523 1.57191546049803 1.70161143348026 1.85222278407458 1.55174811527551 1.53524497929876 1.44307942030033 1.36846781151401 1.88919147851126 1.90210560761671 1.83046674850045 0.224789778016507 0.224411277494248 0.223070527619778 0.219703791040174 0.227016674072399 0.226114621198325 0.222498711787657 0.219543488402025 0.23173635942073 0.220467063283626 0.220160984686704 0.228933166937710 0.219876427392338 0.223165624482687 0.227673085713162 0.223940496557611 0.219680353424880 0.230726096631652 0.221652961265103 1 1 - 1641282 1642040 1641513.455 1641228 1643747 - gene protein_coding_gene FALSE TRUE AT1G05550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05540.1); contains InterPro domain Protein of unknown function DUF295; (InterPro:IPR005174) -0.0607235339160679 -0.58873216867508 0.568061003191363 1 -0.437539064380848 3.35987537812184 -0.0607235339160679 0.105251914106133
AT1G74330_at 2.34708913517117 2.24995345091407 2.62776063922783 2.40442158685862 1.89098432937783 2.00787099192235 1.99832826000808 2.35559353092060 2.54269023092173 2.32832637382456 2.12551385110210 2.08588375501516 2.22060461891515 2.25824839508695 2.57553349097641 2.11691529070364 2.49758014978114 2.64355102228451 2.39133561571765 0.207536304628609 0.207252602755256 0.206596019007206 0.211456452562265 0.202841931107506 0.207878724186878 0.205294483647688 0.202841931107506 0.209235733342771 0.210295278852032 0.203995899994521 0.202841931107506 0.21258101145322 0.214970550722636 0.211767832178435 0.21535164791023 0.202841931107506 0.206986552082728 0.219484667051622 1 1 - 27949053 27949732 27949422.222 27947279 27950770 - gene protein_coding_gene FALSE TRUE AT1G74330.1 ATP binding / protein kinase similar to IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1), kinase [Arabidopsis thaliana] (TAIR:AT1G18670.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79143.1); similar to Os07g0596600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060172.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0551434795808335 -0.58867802336128 0.568096049666426 1 -0.437570279900901 4.60338168816062 -0.0551434795808335 0.077511614556909
AT3G01660_at 6.92507081794449 7.56484608244185 7.40239150744204 7.39010786498003 7.85511954798456 7.75048567803268 7.91409792522205 7.72976447000718 6.13317683302995 6.57080716828456 6.21029347259277 6.51909905018643 6.28763982727946 6.16509576839554 6.41050700524132 7.00293937087743 6.96968361458299 5.85311476289144 6.39631071992645 0.238146880690628 0.226495485314109 0.223496139407907 0.227054601416104 0.227341915281903 0.231862038914192 0.228764924009323 0.225678945570979 0.240108083821839 0.223496139407907 0.226605935499539 0.223496139407907 0.228183747241204 0.229738290435987 0.232292764962208 0.228487246473623 0.244192330411313 0.23560288205946 0.224497580336881 3 3 + 245777 246363 246074.182 245485 246515 + gene protein_coding_gene FALSE TRUE AT3G01660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29590.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51842.1); similar to Os04g0481300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053109.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.0633065138157685 0.588585054302662 0.568156228227865 1 -0.437623871592461 13.9635162448000 0.0633065138157685 0.116653522140339
AT2G16690_at 1.79113692931957 1.99654264586977 2.11812435947975 2.20374521180265 1.94645321584958 2.37383845284357 2.31886704472589 1.81188277622037 1.87976635608010 2.18772695204109 1.84971388491851 2.02459946363108 1.61017351508254 2.12253930272357 1.83093534267628 1.47703296927005 2.44944889998125 1.73011808368533 2.52155418448052 0.231737196277869 0.232382217174538 0.230429549800863 0.230667154211072 0.225209541048158 0.231454988845487 0.230936563790207 0.227139013898347 0.231122319148433 0.226099105889800 0.225492875553700 0.230936238588473 0.236875110458783 0.228134302753253 0.227914148814028 0.225645929378054 0.228001272107039 0.240609386785306 0.224892115802704 2 2 - 7244019 7244530 7244250 7243960 7244682 - gene protein_coding_gene FALSE TRUE AT2G16690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41570.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains domain Retrovirus zinc finger-like domains (SSF57756) -0.0642980102472523 -0.588137555508777 0.568445941454532 1 -0.43788172014291 4.11165850298722 -0.0642980102472523 0.121041021828277
AT4G04260_at 1.49853670559749 1.8948602371809 1.81396425428982 2.1707262426059 1.17268368825717 1.10795472215565 1.52487436094075 1.23738500438787 1.30133470919661 1.36010696488918 1.87439592283799 1.31206670363935 1.65174628099352 1.23473830038760 1.62054410829826 1.38042137166892 1.40780528115316 1.27944348846709 2.19539197086821 0.245896470233022 0.244123207041394 0.242290989903115 0.242290989903115 0.246967363055295 0.250972593481722 0.242290989903115 0.247645004988004 0.256591894024073 0.250928974699252 0.242290989903115 0.242290989903115 0.250296567751972 0.242290989903115 0.244712993151307 0.242290989903115 0.248643074537544 0.242290989903115 0.253609195964698 4 4 + 2054646 2054933 2054766 2054634 2055847 + gene protein_coding_gene FALSE TRUE AT4G04260.1 bromo-adjacent homology (BAH) domain-containing protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G22140.2); similar to Os09g0386500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063075.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.0606906081684402 -0.588022497474845 0.56852044371435 1 -0.437947986921262 3.09716801717631 -0.0606906081684402 0.105434386840822
AT1G33990_at 10.3365400000737 10.4493988326276 10.6005155898991 10.4850438954675 10.8180223875736 10.6425334645752 10.3507056231770 10.3911998099234 10.3471479667375 10.4884277245759 10.4632758593714 10.395437774781 10.3409921788149 10.2256083993746 10.1038394028421 10.1849566924563 10.0382754541142 10.2411197944386 10.3761537742980 0.101622399022382 0.0955568330076102 0.0964997452977618 0.0996596707456733 0.0955568330076102 0.105782071849516 0.0955568330076102 0.0977804219482837 0.109327866884154 0.096754712487803 0.096342639544582 0.0973952405454557 0.0983236357747368 0.103982065129992 0.0999350737083946 0.09976850889313 0.110378157258114 0.0993738483888204 0.0964392044579176 1 1|0 +|/ 12356997 12357830 12357458.8 12355548 12358011 + gene protein_coding_gene FALSE TRUE AT1G33990.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G09900.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.0499230702910554 0.587932497840075 0.568578723903659 1 -0.437999813070847 20.8357939586119 0.0499230702910554 0.0418588323854627
AT4G19220_at 1.55343918380661 1.83402007578536 1.90135613604559 2.43853935859139 1.74235068593627 1.98832536010573 1.73560467033613 1.82643529210740 2.39091665057228 1.42399947798736 1.6411699371176 1.85383239080193 1.530690550061 1.53795138718092 1.67971341615216 1.72241361712853 2.06106477840773 1.90572221109793 1.87452373669968 0.226386687454801 0.234684472149012 0.227182029831171 0.231067255928861 0.228809473467422 0.234376945810114 0.225575125800727 0.254609512282005 0.233841843001072 0.226378832592948 0.22671599907592 0.228114768800262 0.227790619986041 0.228221429453158 0.230691387382921 0.222280163709322 0.227328227495135 0.234673035192036 0.224943292637184 4 4 - 10505304 10505832 10505609.727 10505277 10508132 - gene protein_coding_gene FALSE TRUE AT4G19220.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to PPR-repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89716.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0626789552839547 0.587904832220622 0.568596639715956 1 -0.43801574278616 3.69653371587927 0.0626789552839547 0.114274429004042
AT3G23270_at 0.920527284341975 1.22181808322929 0.850448225948073 1.56858574368537 0.635989032236255 0.99090708112183 0.323000457523692 0.86036216878969 1.22454613699741 0.583781759831649 0.909849957651913 0.901326107959446 1.03038210865864 0.79705360350876 0.960986839864417 0.839943601500352 1.06433115560173 0.847789284892034 1.01799961659076 0.189496670203871 0.194022787316880 0.188953653942286 0.191740320221559 0.192421657386093 0.19541044637544 0.189597706408808 0.191749499086931 0.193506259179474 0.198091939613266 0.196041944314669 0.191071759971578 0.191689246305259 0.187166240174458 0.191785397914254 0.188906769775014 0.191623404075604 0.189346972837078 0.190112798202121 3 3 + 8319692 8320291 8319961.455 8316443 8320344 + gene protein_coding_gene FALSE TRUE AT3G23270.1 regulator of chromosome condensation (RCC1) family protein similar to zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G42140.1); similar to zinc finger protein (PRAF1) / regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT1G76950.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G14370.1); similar to putative regulator of chromosome condensation protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44179.1); similar to H0723C07.10 [Oryza sativa (indica cultivar-group)] (GB:CAJ86040.1); similar to Regulator of chromosome condensation, RCC1 [Medicago truncatula] (GB:ABE91733.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.0784520917957207 0.587877090665322 0.568614605012744 1 -0.438031715522036 1.85198826140682 0.0784520917957207 0.174881312471014
AT1G19320_at 1.12597223055155 0.746212158957594 1.30456425009134 1.3182897907032 1.09339690015336 1.03401704663552 1.08672704147229 0.964620805913 1.64327985833601 1.04342031821812 1.46738351920529 1.57409633974383 1.08307320973381 0.989346360325479 1.07377258699116 0.82562484994903 1.28117976813029 1.36373042186869 1.23276690558209 0.235428981032317 0.233957891084845 0.231223036243186 0.232469987647319 0.229351436569284 0.234776194812135 0.236321599298085 0.230718317628443 0.235161914931985 0.229351436569284 0.229351436569284 0.232059502350936 0.231001813360581 0.22941422762457 0.230818302863853 0.229351436569284 0.229351436569284 0.232267680039013 0.235472974587527 1 1 + 6679531 6680106 6679874 6679272 6680243 + gene protein_coding_gene FALSE TRUE AT1G19320.1 pathogenesis-related thaumatin family protein similar to ATLP-3 (Arabidopsis thaumatin-like protein 3) [Arabidopsis thaliana] (TAIR:AT1G75030.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.0537353961434751 0.587742883540299 0.568701521274911 1 -0.438108977925197 2.34110748274583 0.0537353961434751 0.0698339366781673
AT1G40390_at 0.396376545352248 0.749070330308021 0.643073368344296 0.815145287874998 0.723537245582344 0.523075870794836 0.86722347633171 0.326396867794160 0.942617160191803 0.635634836420701 0.429021692630199 0.961622131684364 0.689520633764663 0.587555103526363 0.779013479947295 0.908974083129347 1.19121042844775 0.753135539016879 0.673955407604811 0.195804430899827 0.192009202328970 0.193740912611933 0.188595288459282 0.189564482075505 0.188399683164827 0.191171325016974 0.188784426678944 0.191907523691578 0.189442932704332 0.197249692331107 0.187411158344645 0.193706749931200 0.188891173000414 0.202626305042401 0.193169658236272 0.198943351607058 0.200842314639423 0.186251627865719 1 1 - 15435700 15435931 15435820.364 15435017 15437115 - gene protein_coding_gene FALSE TRUE AT1G40390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43760.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.0641059866575848 0.587066589354609 0.56913961856429 1 -0.438498066581805 1.39960859300989 0.0641059866575848 0.120727159883688
AT1G52580_at 2.18498235884326 1.74465945995427 1.98843401391080 2.09679464443423 2.07371575240531 2.01977885138469 1.99895124553811 2.25558346653383 2.30255345514953 2.30405864593435 1.72953952581907 1.9696567514457 2.09034883021377 2.15149795231845 2.49704776099273 2.23161012067358 2.00319348950101 2.43210266858119 2.14839650266335 0.219860048853025 0.218293244380886 0.228112877286371 0.216465787880845 0.215165189347345 0.215165189347345 0.222695553887974 0.215165189347345 0.219245709354979 0.22535650861206 0.221676968943757 0.217590524597714 0.223954295796989 0.219263742951509 0.219720949993299 0.215199986986177 0.224730473470343 0.225299151398563 0.215706174380635 1 1|0 +|/ 19591754 19592382 19592057.8 19591306 19592721 + gene protein_coding_gene FALSE TRUE AT1G52580.1 rhomboid family protein similar to ATRBL1 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 1) [Arabidopsis thaliana] (TAIR:AT2G29050.1); similar to Rhomboid-like protein [Medicago truncatula] (GB:ABD28718.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -0.0574541071614152 -0.586787505963456 0.569320459951605 1 -0.438658508154701 4.24025956013836 -0.0574541071614152 0.090650844422618
AT1G21920_at 10.3180505912327 10.7069222099480 10.8216570443989 10.8808220547934 11.4645774277734 11.1745937387977 10.7713288242842 10.8364442832441 10.8451377951911 10.9745985568227 10.4237177866158 9.8381227513977 10.7444593289 10.5861461654546 9.65407708300454 10.8119484945157 10.7960310368535 10.131047482937 10.9198758608884 0.102137919042008 0.0945014816377927 0.100951983629789 0.0966834030044539 0.0945014816377927 0.110747420207035 0.0951450664044423 0.0946875531583454 0.0980960388026805 0.0945014816377927 0.0945014816377927 0.0975048758269628 0.0945014816377927 0.0977447051560378 0.0988888604108805 0.0945014816377927 0.0983987024167413 0.101587391739520 0.0945014816377927 1 1|0 -|/ 7704477 7705057 7704775.3 7704244 7706129 - gene protein_coding_gene FALSE TRUE AT1G21920.1 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related similar to MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related [Arabidopsis thaliana] (TAIR:AT1G77660.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66263.1); similar to Os09g0453900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063348.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66264.1); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.0563921077469549 -0.58659453202301 0.569445522181726 1 -0.438769404802189 21.5149984403976 -0.0563921077469549 0.085316510397105
AT1G51290_at 1.18237346617991 1.41851111927046 1.18409455825376 1.71391077018442 1.19995034372808 1.43985376431029 1.33172640224153 1.33481071804634 1.67034890533175 1.82063783103454 1.88652854244771 1.31124268588102 1.47844059023459 1.45410680848413 1.32126445933811 1.45876996285769 1.32289747874530 1.86231979130167 1.61510193742763 0.181133563499063 0.187916127328384 0.182265527151391 0.181381457150794 0.180363357827379 0.179753627243930 0.179820711654295 0.180906259837729 0.178223870875016 0.178223870875016 0.178223870875016 0.18566983099171 0.179924334293902 0.182286594640506 0.183316914355451 0.181888782427866 0.181098559883061 0.18229824405864 0.182667354033463 1 1 + 19016376 19016926 19016644.273 19015841 19016974 + gene protein_coding_gene FALSE TRUE AT1G51290.1 F-box family protein (FBX10) similar to F-box family protein (FBX11) [Arabidopsis thaliana] (TAIR:AT1G51320.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE82845.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.061243167667726 -0.58649520755379 0.569509898059858 1 -0.438826470473986 2.95764181669814 -0.061243167667726 0.108629456649934
AT1G10840_at 8.38688717250373 8.42756279239803 7.97569321811342 8.10543337665854 8.4347467694523 8.2720225334997 8.1909808588956 8.55154099466287 8.19005977013177 7.98257773243663 8.40562263069478 8.4401066736399 8.2202996748768 8.18785794907164 8.36936701610564 8.15560624024721 7.70932914307648 7.63567438998894 7.99607793119567 0.164588179971051 0.161733145593226 0.174375608565757 0.164514173305026 0.155936009684004 0.174207446544057 0.152939115393097 0.159362749306628 0.165060066777219 0.154111851737698 0.155087781921695 0.154849606149063 0.156151484915948 0.156595023825879 0.156821951736420 0.159655463558821 0.161807874721672 0.171300202172666 0.163636442846756 1 1|0 -|/ 3607907 3609113 3608335.7 3607632 3610521 - gene protein_coding_gene FALSE TRUE AT1G10840.1|AT1G10840.2 TIF3H1 (eukaryotic translation initiation factor 3 subunit H1); translation initiation factor Eocodes eukaryotic initiation factor 3H1 subunit (TIF3H1). Identical to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) (TIF3H1) [Arabidopsis Thaliana] (GB:Q9C5Z2;GB:Q9SAB9); similar to Mov34/MPN/PAD-1 [Medicago truncatula] (GB:ABE85809.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639)|Identical to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) (TIF3H1) [Arabidopsis Thaliana] (GB:Q9C5Z2;GB:Q9SAB9); similar to Mov34/MPN/PAD-1 [Medicago truncatula] (GB:ABE85809.1); contains domain JUN ACTIVATION DOMAIN BINDING PROTEIN (PTHR10410); contains domain EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 3 (PTHR10410:SF3) -0.0540122466963762 -0.586108563670031 0.56976053412095 1 -0.439048526070281 16.3914691858400 -0.0540122466963762 0.0723877136490163
AT1G62150_at 3.51055172038978 3.95653468549392 3.22308860822307 4.06421316449322 3.33773549161526 3.60889422949432 3.55296768366026 4.19563500115762 3.23072194410676 3.52356381686923 3.24165530414877 3.28668621795393 3.50999675882826 3.59512297000538 3.55586740301444 3.17185174623746 3.76432524681703 3.691642051522 3.46074722587915 0.208614640694244 0.205923217650996 0.219251143632448 0.211971754328919 0.205556175727640 0.214286231310130 0.205556175727640 0.209310463463541 0.219745794970662 0.211559190139796 0.205556175727640 0.208317095535148 0.205556175727640 0.212892871831183 0.20619472419275 0.209873754233972 0.216432354961511 0.211755729341623 0.212393483063703 1 1 - 22973866 22974376 22974110.4 22973694 22975429 - gene protein_coding_gene FALSE TRUE AT1G62150.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62085.1); similar to mitochondrial transcription termination factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38194.1); similar to Os05g0413000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055544.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45958.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.0866534662606993 -0.585534633133439 0.57013268678916 1 -0.439377891036769 7.12227980203308 -0.0866534662606993 0.204244072256637
AT3G29570_at 0.952723433222844 1.09854722119831 1.13007008420243 1.03784524631203 1.1084043691696 0.86892757747714 0.936736029493421 1.00506047524157 1.26065915332788 1.31944725782997 0.984987413643417 1.18191513245208 1.31447412569845 1.27409952798837 1.13905442417503 0.979448664473278 0.925252581156887 0.761141334800943 1.04989733711277 0.198177537488543 0.190524197834324 0.188559421603453 0.186734930177958 0.201003544402710 0.189912613355317 0.185933674441025 0.186012162498608 0.190148313178929 0.195008612039791 0.190832327416351 0.188470600863217 0.185974779574287 0.194165497616852 0.185933674441025 0.186291792197137 0.199208486030824 0.186640460686202 0.195131090662928 3 3 - 11366285 11366728 11366477.364 11366285 11367268 - gene protein_coding_gene FALSE TRUE AT3G29570.1 similar to ATEXT3 (EXTENSIN 3), structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G21310.1); similar to B13 antigen [Trypanosoma cruzi] (GB:AAP88022.1) -0.0509547846868585 -0.585393613773715 0.570224147966893 1 -0.439458772523979 2.15731325452571 -0.0509547846868585 0.0524293834938068
AT1G32650_at 1.91054717137484 1.50398404209023 1.64123833927199 1.96693849027618 1.40007323112647 1.82816739185093 1.42196876076080 2.25541845723457 1.79914131966976 1.23734780891720 2.17909738019551 1.75848730683634 1.66922435556014 1.76540634965039 2.06329889032774 1.64135280790142 1.55666168970839 1.23124014280373 1.48453381499819 0.178902382704010 0.179135092510030 0.182974368152026 0.182239174286084 0.181075943329812 0.185561330674250 0.181153566067931 0.182416238928571 0.178893992018369 0.184431576347353 0.190216282058625 0.178474268696996 0.179199101925675 0.186718875179993 0.185717517842826 0.177835923721982 0.180489457126152 0.183931730801197 0.189455839051308 1 1 - 11810538 11810580 11810565.091 11810537 11810611 - gene protein_coding_gene FALSE TRUE AT1G32650.1 unknown protein 0.0811066113887599 0.585052794398451 0.570445226796856 1 -0.439654173910975 3.36109386711559 0.0811066113887599 0.185522120022318
AT1G66740_at 6.36843517654581 5.99769379560245 6.04635700262165 5.84450422976433 6.99461866374597 6.28887978863578 6.68675410653436 6.36751629527604 5.62871942992306 5.22992871382122 5.60152941295247 4.9244045017271 5.55831361123878 5.52177472417491 5.17224559553683 5.35464768906189 5.9497736846121 5.1415489479889 5.5976813965816 0.212345859476128 0.222654163731754 0.227232895089649 0.220672946011066 0.219750386549181 0.220565735520587 0.231784337169929 0.217944779085686 0.235443425166780 0.21847737676792 0.212345859476128 0.216620478815134 0.212345859476128 0.217980707741025 0.215123479585261 0.216400452850237 0.220161024141659 0.220154902525809 0.229199477181383 1 1|0 +|/ 24896262 24897112 24896723.3 24896003 24897429 + gene protein_coding_gene FALSE TRUE AT1G66740.1 AtSP7 (Anti- silencing function 1a) Located on the SSL2 region of Arabidopsis thaliana, which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility. Identical to Anti-silencing factor 1-like protein a (Anti-silencing function 1a protein) (Silencing group A protein 2) (S-locus protein 7) (AtSP7) (ASF1A) [Arabidopsis Thaliana] (GB:Q9C9M6); similar to ASF1B/SGA01/SGA1 (Anti- silencing function 1b) [Arabidopsis thaliana] (TAIR:AT5G38110.1); similar to S-locus protein 7 [Brassica rapa] (GB:BAA85456.1); contains InterPro domain Anti-silencing protein, ASF1-like; (InterPro:IPR006818) -0.071961665747369 -0.58497480421394 0.5704958231437 1 -0.439698872938732 11.7685813578509 -0.071961665747369 0.152658723022247
AT1G79100_at 1.26237446975428 1.29122133604293 1.49729006071215 1.57471792608023 1.48132245320117 1.34910949788194 1.54089042389035 1.34534053758717 1.71369818952930 1.54345811874677 1.18293445178493 1.32615567359312 1.12343189537064 1.40415481699994 1.91200154519120 1.27739829543215 1.56625570275061 1.28037345360100 1.54080289052570 0.202266214851249 0.204654686753858 0.198005512878065 0.200261427104842 0.198485392189864 0.200590160255496 0.204371070821189 0.202986167016672 0.202645245603730 0.197592995455981 0.198244015498293 0.19984342606467 0.201176423128072 0.202116981231504 0.198610402323925 0.202056961734520 0.204922993267941 0.208884224197219 0.201354870560719 1 0|1 /|+ 29758798 29759257 29759071.833 29758541 29759281 + gene protein_coding_gene FALSE TRUE AT1G79100.1 arginine/serine-rich protein-related similar to SR45 (arginine/serine-rich 45), RNA binding [Arabidopsis thaliana] (TAIR:AT1G16610.2); similar to putative ar (GB:ABB72811.1); similar to putative ar (GB:ABB55376.1); contains domain RNA-binding domain, RBD (SSF54928); contains domain RIBONUCLEIC ACID BINDING PROTEIN S1 (PTHR15481) -0.0497891054716439 -0.584554535853403 0.570768515458896 1 -0.439939648251864 2.90948731928096 -0.0497891054716439 0.0432800129366522
AT3G06240_at 7.76926319853993 7.97006806547766 7.697035421108 7.97766574397751 8.50804564334897 7.74658988849776 7.66581127765667 7.70435274490806 7.24916078772334 7.40837716954577 7.27076433241446 7.13906913827889 7.35911339641643 7.19441187584098 7.19431598553073 7.36446383916662 7.45551493669955 6.96491786635154 7.26681706858168 0.198006290067962 0.203968721682145 0.209970431855427 0.202830918736390 0.216466009661834 0.216545747849845 0.203603379194029 0.197809209175252 0.214761291464721 0.216279782561255 0.206161428672061 0.206027473433961 0.207207234066065 0.205583208238912 0.204836233893479 0.198474198117933 0.203684050389089 0.213212078980310 0.212160989110333 3 3 + 1888053 1888580 1888302.636 1887049 1888756 + gene protein_coding_gene FALSE TRUE AT3G06240.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23880.1); similar to Putative F-Box protein, identical [Solanum demissum] (GB:AAT38720.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.069831715987309 0.584440035040349 0.570842821931731 1 -0.440005218708115 15.1553238795832 0.069831715987309 0.144826829656495
AT3G45940_at 1.54944036650979 1.32672715997242 1.97857310178491 1.46592483530223 1.78779838457994 1.44710881558365 1.43593521297082 1.79821780254363 1.41002397959687 2.4441841792717 1.84219024249892 1.92965690991933 1.61946397195956 1.82674680448808 1.68244716040604 2.24632020507306 2.25899874814043 2.22801160179580 2.03969806306563 0.194309521732709 0.199656130620168 0.196064512742752 0.193755564932081 0.197188207554178 0.197771150849874 0.200721434345663 0.197685835256785 0.190648556003340 0.198034324692573 0.19577016869826 0.194885393516169 0.197463891603202 0.195520258596007 0.201538561993083 0.196871365166831 0.210513022866500 0.214690120320518 0.199457610655225 3 3|0 -|/ 16897213 16897816 16897577.3 16897211 16900156 - gene protein_coding_gene FALSE TRUE AT3G45940.1 alpha-xylosidase, putative similar to ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1), alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] (TAIR:AT1G68560.1); similar to alpha-glucosidase 1 (AGLU1) [Arabidopsis thaliana] (TAIR:AT5G11720.1); similar to alpha-glucosidase [Solanum tuberosum] (GB:CAB96077.1); similar to putative alpha-glucosidase [Oryza sativa (japonica cultivar-group)] (GB:BAA99366.1); similar to alpha-D-xylosidase [Tropaeolum majus] (GB:CAA10382.2); contains InterPro domain Glycoside hydrolase, family 31; (InterPro:IPR000322); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) 0.0659325985186359 0.584408649165501 0.570863191035295 1 -0.440023190162189 3.5581481413292 0.0659325985186359 0.129470737103382
AT3G27370_at 1.67436931814797 1.57521926489271 2.18648421141543 1.54941326851876 1.07714414292097 1.77225270291441 1.66097491964504 1.3455366943783 1.67042249298585 1.64776791259691 2.02523151329791 1.34221972951858 1.47290181332440 1.61815998198386 1.90076494075373 1.59602127343480 1.84998465503135 1.75986298300493 1.55130639930272 0.197492984295803 0.191892396832304 0.190027183348598 0.190027183348598 0.192338370296923 0.190027183348598 0.198768677075013 0.190027183348598 0.199976053732611 0.196591938087016 0.203857511731328 0.19573306251662 0.205450457960457 0.195516607537654 0.191941217047402 0.195506393311697 0.191467862576283 0.192473681414471 0.20349081042801 3 3|0 -|/ 10131661 10131967 10131816.778 10131661 10131993 - gene protein_coding_gene FALSE TRUE AT3G27370.1 unknown protein 0.0773881459207945 0.584044954116235 0.571099254152131 1 -0.440231375023878 3.26457879681529 0.0773881459207945 0.172913333225997
AT3G42110_at 2.27425468866857 1.65031179850525 1.94122088626416 2.17869728390148 1.42190291439526 1.72233628375554 1.84125404479552 1.66237952202961 1.94622182314081 2.31848972759408 2.50298311732005 2.00823423512579 1.90595829012535 1.82103771446518 1.93727791569617 2.08685043433261 1.95277709242240 1.98586917590931 2.08427935779676 0.269828904277347 0.262411842385325 0.266865641614863 0.262097583971772 0.260720392632623 0.262589096777195 0.268133598062574 0.262445797700101 0.259761335904374 0.261843051737381 0.264526775631694 0.251422403443158 0.254810625349911 0.254701826772469 0.254368360932363 0.256684753873236 0.255669259220807 0.251986218395945 0.252914692243773 3 3|0 -|/ 14293518 14294016 14293799 14293271 14295692 - gene protein_coding_gene FALSE TRUE AT3G42110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13270.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0661087386699537 -0.583895729099086 0.571196126820374 1 -0.44031675876275 3.90727157767367 -0.0661087386699537 0.130418944838103
AT3G07000_at 1.59343177280922 1.70985584284276 1.83597619746921 1.92844161270941 1.81963432695696 1.58469904958161 2.02124115029281 1.88175635967118 1.38165832537384 1.82292576451212 1.49981987974747 1.77077199689290 2.19248543255648 1.79663440235642 1.68317523598111 1.63379703602576 2.60783592938946 1.50100822634868 1.96839352636562 0.227688265795292 0.230726495664013 0.237793658643620 0.235383351155323 0.23221193702009 0.235259047276038 0.227862026566864 0.234933210062395 0.246736759041165 0.238948487896041 0.227688265795292 0.235131842879753 0.235755164575533 0.232831942183390 0.228388417764956 0.235744199362676 0.232833945226905 0.241859384582802 0.240723771736000 3 3 + 2210652 2211163 2210958.091 2209418 2211306 + gene protein_coding_gene FALSE TRUE AT3G07000.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G06990.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G45730.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.0509908303018633 0.58370485952406 0.571320046985572 1 -0.440425941006114 3.57688798378972 0.0509908303018633 0.0538294615495027
AT1G77910_at 1.86526763276230 1.87046037146666 1.78740121351888 1.83755954626006 1.7212904556271 1.88506031059947 0.945224012652397 1.92900436509031 1.80144471799029 1.85199338776044 1.9052670058456 1.60373294355548 1.77713344176703 1.60958252443444 1.77761797817477 1.68897474164338 1.81700814335751 2.24579372279072 1.75814815733477 0.185130397999345 0.187261661111126 0.192716307406701 0.190118322771649 0.195403158948708 0.185904015168815 0.196306580096333 0.187381340041198 0.199856926553059 0.188788312407005 0.193887941537456 0.186830343974997 0.192868946773118 0.195558930325078 0.185130397999345 0.193409276295538 0.192774069026873 0.189156185709155 0.190337643554177 1 1 + 29301036 29301264 29301153.909 29301032 29301301 + gene protein_coding_gene FALSE TRUE AT1G77910.1 unknown protein 0.0773077555047062 0.583654241085936 0.57135291295347 1 -0.440454890440172 3.53365893869279 0.0773077555047062 0.172811105753646
AT3G22970_at 9.64129023534635 9.93757567357197 9.4051896573034 9.49160367778587 10.2056910569833 9.88277611419729 9.39663088716774 9.32283682561858 9.08184831335707 9.3118213614695 9.20876924946237 9.06690644207197 8.90495811185588 9.25773353682876 8.96989958588367 8.94698288893822 9.31493473530042 8.90832550100028 9.00956706450172 0.141764993905788 0.144634462667741 0.141042928414988 0.144736551021182 0.142386577094408 0.143623520966755 0.140508527073565 0.148129280190373 0.163194204235366 0.152343431976908 0.149071199319151 0.140252585380773 0.144801471146472 0.151870779323547 0.151459885575688 0.148818450621269 0.151574617287100 0.150479527951626 0.152074761744195 3 3|0 +|/ 8153203 8153844 8153601.1 8152045 8154113 + gene protein_coding_gene FALSE TRUE AT3G22970.1|AT3G22970.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14620.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44687.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76408.1); similar to Os03g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051556.1); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) 0.0548166155581165 0.583596262901812 0.571390558782662 1 -0.440488046138474 18.7638122674270 0.0548166155581165 0.0783484932881536
AT4G28680_at 0.894842503029904 0.910841409105924 0.82376244988823 1.44703631710987 0.574510275899125 0.610581542383895 1.02291105458900 0.95516630562601 0.817973688059355 0.544767038171057 1.13424307223799 0.407486966299821 0.881550736563478 0.905871246136178 1.01974282280555 0.998486096912718 1.27436249793431 0.998076150969349 0.883086794095603 0.224407706766841 0.237041921147677 0.230723872023886 0.224407706766841 0.231712644851341 0.234420905230102 0.231366876139301 0.22476278531456 0.227160319842574 0.229119172695504 0.233442020386631 0.226720388333145 0.240511183919578 0.228529927559540 0.233516843941093 0.224407706766841 0.227669324724468 0.224459532286001 0.230591669172849 4 4|0 +|/ 14157243 14158513 14157897.7 14155254 14158722 + gene protein_coding_gene FALSE TRUE AT4G28680.1|AT4G28680.2 tyrosine decarboxylase, putative Identical to Probable tyrosine decarboxylase 2 (EC 4.1.1.25) [Arabidopsis Thaliana] (GB:Q9M0G4); similar to tyrosine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT2G20340.1); similar to Os07g0437500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059509.1); similar to tyrosine/dopa decarboxylase [Thalictrum flavum subsp. glaucum] (GB:AAG60665.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129); contains InterPro domain Aromatic-L-amino-acid decarboxylase; (InterPro:IPR010977); contains InterPro domain Globin-related; (InterPro:IPR012292) 0.0609503017614945 0.583517574014621 0.57144165444095 1 -0.440533040639316 1.75549979329121 0.0609503017614945 0.10871039517219
AT4G22000_at 7.18125809223053 7.35658438973381 7.52308846653114 7.40632459830525 7.17151458832335 7.30226800107198 7.19713732438942 7.51200191468657 7.38396029008854 7.79675831578286 7.7716910750638 7.7070059959142 7.50295475313013 7.53722556885354 7.9184853167647 7.64059609073995 6.98188667442152 7.06319769605195 7.80215518434993 0.173697386433690 0.176640741675129 0.177429445863507 0.178906067651298 0.181119954267708 0.199693494678702 0.182067625279166 0.175631632659827 0.187223701396479 0.173697386433690 0.175450168693966 0.177977607552130 0.180574237976169 0.192502638185238 0.179736692860645 0.173697386433690 0.203747793671602 0.194884057567017 0.176406977631361 4 4 - 11659882 11660181 11660043.273 11659650 11660916 - gene protein_coding_gene FALSE TRUE AT4G22000.1 similar to Os05g0114600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054462.1) -0.0532620252042293 -0.58342373452819 0.571502591201492 1 -0.440586690875623 14.9194413351296 -0.0532620252042293 0.0693535380073463
AT4G02780_at 0.880139266017396 0.816311117800435 0.827269234920551 0.993064614505356 0.656094730594448 0.914711773126086 1.1770363117688 1.07019542552979 0.389257340940563 0.696404111709155 0.814257090082564 1.13111108833160 0.733790142275921 0.560732355996057 1.02400693797664 0.70431579761841 0.796990921244184 1.44531863904729 0.895206645527582 0.227360919408657 0.22087960820682 0.228292764746574 0.221127727107827 0.221772054838777 0.226961383191909 0.226876920576220 0.224149942761501 0.239261549317566 0.225569187912823 0.228008316703699 0.226016692832499 0.227557718812273 0.224848881211743 0.230995799765337 0.230043494013180 0.22087960820682 0.226706878656993 0.229101563210542 4 4 - 1237893 1240137 1238768.727 1237767 1244813 - gene protein_coding_gene FALSE TRUE AT4G02780.1 GA1 (GA REQUIRING 1); ent-copalyl diphosphate synthase Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis Identical to Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13) (Ent- copalyl diphosphate synthase) (KSA) (AtCPS) (GA1) [Arabidopsis Thaliana] (GB:Q38802); similar to GA2 (GA REQUIRING 2), ent-kaurene synthase [Arabidopsis thaliana] (TAIR:AT1G79460.1); similar to Ent-kaurene synthase A, chloroplast precursor (Ent-copalyl diphosphate synthase) (KSA) (GB:O04408); similar to copalyl diphosphate synthase [Solanum lycopersicum] (GB:BAA84918.1); similar to putative copalyl diphosphate synthase [Scoparia dulcis] (GB:BAD91286.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) 0.051445281759993 0.583417995855751 0.571506317850873 1 -0.440589971547595 1.6976551780982 0.051445281759993 0.0573591739168629
AT1G36510_at 2.08407571817912 2.42494508474056 2.91583873103897 2.9904257511293 1.91734688789963 2.35196465682682 2.26671132854889 2.57386828374052 2.06717214251547 2.42781739279045 2.13779956008051 2.14884812952082 2.43337805687606 2.00982102992313 1.87692365043191 1.98440602103118 2.12658087126598 2.25207263838430 2.85570368368995 0.210135540676119 0.209108897767669 0.213030878164813 0.217214772005949 0.210603710112544 0.210334289587109 0.209108897767669 0.211204451758011 0.223220007054449 0.209108897767669 0.214821994015606 0.217675761329434 0.215591128126691 0.210875943163284 0.219326767418795 0.212924842522008 0.230417863564700 0.214286071929832 0.21188927362168 1 1|0 +|/ 13764503 13765364 13764918.25 13763138 13765477 + gene protein_coding_gene FALSE TRUE AT1G36510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G32260.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0612542126939902 -0.583381009847601 0.571530336594692 1 -0.440611114905791 4.72637696410691 -0.0612542126939902 0.110130382144557
AT3G28920_at 7.69802681845048 8.12573155374347 7.44131578681635 8.0388494005769 8.60128785540446 8.1194236979486 8.29291010239509 8.21080667980828 7.80105483313385 7.68773042899406 7.59843843636965 7.79102302150703 7.83524364715875 7.741938665084 7.69540687547377 7.96807802769128 7.68951890098803 7.5630168299283 8.05277820528572 0.171552297619885 0.173930466801982 0.174700137771176 0.173186875695566 0.171771893176241 0.196719267969611 0.1726217454028 0.171369136526106 0.183603450202397 0.175342170050253 0.171383078340117 0.166396913429211 0.170240445758861 0.180209216951391 0.174960988120459 0.164880366280214 0.172859167776693 0.17787856824768 0.164880366280214 3 3 - 10941847 10942387 10942086.545 10941683 10943070 - gene protein_coding_gene FALSE TRUE AT3G28920.1 ATHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor similar to ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G39760.1); similar to Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation re (GB:ABE90495.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.071752187679429 -0.583115461390231 0.57170280009064 1 -0.440762881087043 15.8573044233911 -0.071752187679429 0.152731089269257
AT4G09800_at 10.0677970585060 10.0610590355749 9.77644046756887 9.83750806724691 10.1784928556243 10.0774194159489 9.90099833668963 9.77187380908563 9.81799102184325 9.83468608510944 9.8349871106366 9.99100392792716 9.65185737752486 9.75046481949333 10.0851250538182 9.4390485595484 9.52287593024896 9.66782738503614 9.9177735769755 0.0785180043518206 0.077674133338202 0.0762164051825815 0.0772785034780116 0.0753714025003284 0.0792458490500703 0.0811600081881694 0.077775928522258 0.0821774985641693 0.0762340213670476 0.0780283090166063 0.0798657276112773 0.075117624391915 0.0757029979989695 0.0767290232269824 0.0762169664672875 0.0829120996988982 0.0800201393337722 0.0751838972914846 4 4|0 +|/ 6174210 6174880 6174662.7 6173712 6175197 + gene protein_coding_gene FALSE TRUE AT4G09800.1 RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to 40S ribosomal protein S18 (RPS18B) [Arabidopsis thaliana] (TAIR:AT1G34030.1); similar to PFL (POINTED FIRST LEAVES), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G22780.1); similar to Ribosomal protein S13 [Medicago truncatula] (GB:ABE81204.1); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.0484424912401624 -0.583023831142894 0.571762316970023 1 -0.440815234589949 19.7588064633666 -0.0484424912401624 0.0303036636597718
AT1G19170_at 5.09807300310973 5.87003742176736 5.34404703395861 5.82392037902181 5.5309226699991 4.98146183064003 5.38934051244792 5.57481352523512 5.01891742227885 4.72740638535788 4.86816353267287 5.29818951027773 4.79218801333564 5.43931894466683 5.61839429579576 5.21627077094914 4.90706676746998 4.69014751978137 4.88930049191825 0.211259511812754 0.213132560945691 0.21393281067729 0.209175348655923 0.231661436592154 0.215912133418021 0.2124611535215 0.221721164879173 0.221487160893924 0.209303606803583 0.211759533095872 0.208827904295544 0.221165768158802 0.208827904295544 0.214749518980360 0.208827904295544 0.218140079215357 0.212405110699285 0.210178107795248 1 1|0 +|/ 6618190 6618840 6618562.8 6616634 6618977 + gene protein_coding_gene FALSE TRUE AT1G19170.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G42950.1); similar to Os09g0439400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063274.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE90955.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.0810989244742628 0.582791842860358 0.571913016091594 1 -0.440947748125922 10.4427064732993 0.0810989244742628 0.186587514721133
AT2G01520_at 0.909434751893774 0.713852181766592 0.711244736817912 0.578988204832633 0.93474962021179 0.836897466930133 0.77119811181527 0.754167754759149 1.39073079295731 0.96542017991319 0.761372414928967 1.22697830071521 1.44487250773567 1.20498271987629 0.940382005103103 1.22755463582649 0.854266880445766 1.28159306117871 1.23047674316753 0.203395838020826 0.205564898648464 0.201428307291075 0.204991402533572 0.203139849153957 0.205061093311157 0.204786407248608 0.204476279378293 0.208022380557439 0.207949476213038 0.208070938880620 0.204436407529184 0.215975484423652 0.207258067142208 0.201818810017879 0.201926007082902 0.209877773127305 0.201428307291075 0.213788403023521 2 2 + 236659 236853 236744.091 235924 237146 + gene protein_coding_gene FALSE TRUE AT2G01520.1 major latex protein-related / MLP-related Identical to MLP-like protein 328 (MLP328) [Arabidopsis Thaliana] (GB:Q9ZVF3); similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT2G01530.1); similar to major latex-like protein [Rubus idaeus] (GB:CAA11844.1); similar to major latex protein [Ficus awkeotsang] (GB:AAQ07269.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.0497427245734891 -0.582657788521002 0.572000107356769 1 -0.441024298543022 1.93296304749788 -0.0497427245734891 0.0443267990260176
AT1G59535_at 0.88853051758962 1.26705361278739 0.935962786839532 1.12234440269816 0.862209919703994 1.29479549455514 1.24592418863513 0.88425592526713 1.43355609842714 1.34020300771657 0.810228084779682 1.42597794003594 1.55009774721096 0.991953259131078 1.11297068678016 1.4945253222007 1.25201649479771 1.35438926025713 1.30361241801453 0.205195285716480 0.192084934811162 0.194934273405900 0.189628683384239 0.194118968126927 0.198369408388403 0.201480039333564 0.190644776119070 0.189628683384239 0.206417449937556 0.196921217558544 0.194751218473922 0.192463899283560 0.192832287351122 0.203303787882622 0.192904802744576 0.197334762087133 0.189628683384239 0.194940730317899 1 1|0 -|/ 21874873 21875168 21874972.714 21874873 21875192 - gene protein_coding_gene FALSE TRUE AT1G59535.1 unknown protein -0.0638584510537614 -0.582312504128755 0.572224461906461 1 -0.441221393988070 2.36670645140214 -0.0638584510537614 0.121871779927424
AT3G01590_at 7.64574823309778 8.12390905908919 8.00504995958281 8.10125441339897 7.96882513337887 7.67907231465774 7.66869189479843 7.63558825493598 6.42724255629075 6.93837310848576 6.77919385540897 6.70361984939038 6.82388840163659 6.77340967899122 6.75628928265411 6.53254005167665 6.87294388885534 6.49287708822005 6.943619286166 0.223043414108784 0.222321373415302 0.222436355882768 0.219366611213406 0.22255894396709 0.225172988558255 0.226920977920544 0.234054259987679 0.243319445691736 0.220174551389262 0.221674596920046 0.221536163111088 0.219699561723282 0.238452659206522 0.229918658030282 0.219531502482755 0.241284892788099 0.239828866493382 0.223287526290844 3 0|3 /|+ 227524 228305 227907.111 225923 228630 + gene protein_coding_gene FALSE TRUE AT3G01590.1|AT3G01590.2 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G14500.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE86317.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.058583186615456 0.582306680706592 0.572228246186161 1 -0.441224717180654 14.5968125307433 0.058583186615456 0.0983440313233726
AT1G06820_at 6.72875484694146 6.13576084192552 5.88884054994156 6.03049391710185 6.53363233351786 6.26507021041248 7.15585325381798 6.6510335929394 6.76002277111926 6.89296378212609 6.59674563212536 7.24447381351994 7.03484668072772 7.1124779415317 7.29096003957731 7.61472159656285 7.22995399869066 6.88793199266137 6.67861297672545 0.213264506855006 0.209299111398814 0.215071765875520 0.209994964495743 0.209301166043984 0.224720688296254 0.212617431710447 0.219661417664234 0.213801213621750 0.209978534221370 0.211679775891908 0.207503655479602 0.207721695588856 0.222878452201775 0.213945216031007 0.210061149364643 0.213293353447230 0.211304427677732 0.218828024266458 1 1 - 2093145 2094248 2093673.364 2092945 2096231 - gene protein_coding_gene FALSE TRUE AT1G06820.1 CRTISO (carotenoid isomerase); carotenoid isomerase Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene. Identical to Carotenoid isomerase, chloroplast precursor (EC 5.-.-.-) (CrtISO) (Carotenoid and chloroplast regulation protein 2) (CRTISO) [Arabidopsis Thaliana] (GB:Q9M9Y8); similar to amine oxidase family [Arabidopsis thaliana] (TAIR:AT1G57770.1); similar to carotenoid isomerase [Chrysanthemum x morifolium] (GB:BAE79546.1); similar to Carotenoid isomerase, chloroplast precursor (CrtISO) (Protein tangerine) (GB:Q8S4R4); similar to Carotenoid isomerase, chloroplast precursor (CrtISO) (GB:Q2VEX9); contains InterPro domain Phytoene dehydrogenase-related protein; (InterPro:IPR008151); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953) -0.0695136312808193 -0.58215965573436 0.572323793069063 1 -0.441308608116771 13.3755368459489 -0.0695136312808193 0.144650934089648
AT3G63000_at 8.83175625497048 9.08655940305364 8.93497008483228 9.19350725288467 9.28863841348628 9.02562920275145 8.82866518304902 9.01199574255677 8.59840896281572 8.67294800883239 8.51673940387337 8.39570218068673 8.33357820005082 8.31588986991632 8.16830103547416 8.7206179162978 8.36263737275599 8.30776625226091 8.74600829095263 0.175421493879111 0.182016307851632 0.190567076121405 0.187023441722329 0.184717128418976 0.182536637449174 0.184857161230983 0.186878175208542 0.209344837761353 0.183807438091643 0.184177370296274 0.185326200591787 0.186725918358192 0.182838970822627 0.190452011278782 0.175281240934216 0.196957474437369 0.197719487168697 0.183679406688159 3 3|0 +|/ 23295497 23296294 23295975.5 23294584 23296515 + gene protein_coding_gene FALSE TRUE AT3G63000.1 NPL4 family protein Identical to NPL4-like protein 1 [Arabidopsis Thaliana] (GB:Q9LYC2); similar to NPL4 family protein [Arabidopsis thaliana] (TAIR:AT2G47970.1); similar to Os01g0377700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043084.1); similar to Nuclear pore complex, rNpl4 component (sc Npl4) (ISS) [Ostreococcus tauri] (GB:CAL51738.1); contains InterPro domain NPL4; (InterPro:IPR007717) -0.0556794830189391 -0.582137185624664 0.57233839644617 1 -0.44132142758507 17.5565197504221 -0.0556794830189391 0.0838110098202394
AT1G61930_at 2.16830327153894 1.97513222342050 2.32942338103593 2.36227127697029 1.66474752472847 1.92262624756784 2.50775832289028 2.40539694884813 1.925013806178 2.02793865936164 2.01381465637791 1.79816905358047 2.16349244359965 1.87414984724156 1.92201316250405 2.05874376733247 2.31410923860585 1.90944100692480 1.79327073987617 0.201914314503856 0.201914314503856 0.207483643457811 0.201914314503856 0.201914314503856 0.205493123514031 0.207617104471037 0.208872339527872 0.209229923599412 0.201914314503856 0.212892811640735 0.211428202829245 0.203694056310356 0.201914314503856 0.207371311275908 0.203970599535804 0.211387636081824 0.202030262227694 0.202627660154232 1 1 + 22896912 22897439 22897158.818 22896766 22897641 + gene protein_coding_gene FALSE TRUE AT1G61930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11700.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) -0.0515233361082934 -0.582035827663474 0.572404271737458 1 -0.44137924777217 4.12803209070477 -0.0515233361082934 0.058780870300627
AT3G16580_at 2.48347833579032 2.42632296135645 2.94591226606408 2.81196833714747 2.22248039276541 2.37219540097926 2.40661460599009 2.82284887295834 2.64355249362491 2.84452385800454 2.66857352914896 2.72239015075379 2.97702888802565 2.69249217066657 2.66849680147118 2.63763837686016 2.77801913161709 2.31974038899816 3.05131363169629 0.201953795891573 0.202925182760109 0.208584899259639 0.207697715974752 0.201279603385466 0.208940488251063 0.200798157880957 0.200000286831474 0.209273278595244 0.208453429522658 0.212475091423824 0.203451850922648 0.200000286831474 0.207197933544536 0.206471667646675 0.204088150657492 0.220025428104108 0.206794682208051 0.2006600522469 3 3 - 5647608 5648067 5647833.545 5647382 5648752 - gene protein_coding_gene FALSE TRUE AT3G16580.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G14710.1); similar to Putative F-box protein, identical [Solanum demissum] (GB:ABI34319.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE83881.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0550464964336457 -0.581739979615895 0.572596574952636 1 -0.441547962014217 5.3262330253654 -0.0550464964336457 0.0805909570964729
AT1G12910_at 8.67892049928617 8.73887899817362 8.50041369785885 8.79986072794197 9.29280973448655 8.99378328857683 8.65041332267368 8.43453526719083 8.73469670961592 8.34767021288921 8.3218344101823 7.81074822926536 8.15588122159466 7.86795860208631 8.1676001976127 8.43308760600348 8.5556253763991 8.1944348980496 8.62867561681855 0.123343890065091 0.122175369493789 0.127735512526307 0.126633952997592 0.121935915251022 0.124805583581781 0.123000599430393 0.122175948287379 0.132663580835289 0.129319869166217 0.127367906458761 0.126257050420117 0.122770550228584 0.123382738230314 0.128301882104386 0.121310897507761 0.124722347501278 0.126449981137957 0.123701961878286 1 1 - 4395137 4395561 4395370.455 4394899 4396289 - gene protein_coding_gene FALSE TRUE AT1G12910.1 ATAN11 (ANTHOCYANIN11); nucleotide binding Encodes a protein with similarity to the petunia WD repeat protein an11. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G26640.1); similar to WD40 repeat protein [Ipomoea purpurea] (GB:BAE94397.1); similar to WD-repeat protein GhTTG2 [Gossypium hirsutum] (GB:AAM95643.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0554606775368609 -0.581695742204933 0.572625332579139 1 -0.441573182534355 17.1405738574021 -0.0554606775368609 0.0828647633741903
AT4G23130_at 6.81599975840357 6.98058399704134 6.4444465568908 6.34676510263368 5.80397782999719 5.6083924288514 4.81871492362159 3.93178599245328 6.1210454999493 4.56145953077998 5.13885688334766 5.16879318641777 4.98531287570727 5.46569766088852 4.20308875877998 4.84862335848645 4.67622436488166 5.05043148788084 4.9441953217527 0.252112938031346 0.241203342950264 0.245622236093831 0.241203342950264 0.243433926594707 0.246008495947148 0.257706135282979 0.260843060542537 0.271750029114246 0.253789901052131 0.260367597210988 0.248661437429533 0.254758594154762 0.242367592480072 0.26148354995299 0.241203342950264 0.266251523805291 0.265497529386103 0.245825984456732 4 4 - 12117699 12118327 12117942.273 12117552 12120145 - gene protein_coding_gene FALSE TRUE AT4G23130.1|AT4G23130.2 CRK5 (CYSTEINE-RICH RLK5); kinase|CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23270.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23280.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0736763831340488 0.581541517993549 0.572725595982169 1 -0.441661094422481 10.9193476685080 0.0736763831340488 0.160626633311107
AFFX-r2-Ec-bioD-5_at 11.5238118302432 11.5949383257407 12.0597553833437 11.7807576396988 11.5925809393367 11.5858652089079 11.5628684238029 11.6359084456790 1.82770837591069 1.22561776459505 1.61768375834401 1.23653212066617 1.44393230286078 1.56732406779165 1.68556531359584 1.64524847063117 1.37260465781762 1.37132442938066 1.64740044312251 0.307923719333361 0.307443838266427 0.308117836169082 0.306641637428002 0.305058583749128 0.309871801137532 0.301729328410767 0.304964003915854 0.297576059661144 0.312487998500841 0.297602803373308 0.306814469555461 0.303579537421353 0.306360734567963 0.305469980132315 0.299086105004704 0.307620406225999 0.308424199048574 0.313560739123429 NA NA NA NA NA FALSE FALSE 0.0504880326909452 0.581515599182063 0.572742447113276 1 -0.441675866692207 13.1967786502668 0.0504880326909452 0.0514175272392753
AT4G03170_at 1.62783785915578 1.77593729651635 1.74066192135725 1.99653693610532 1.33435461087286 1.58693274852193 1.49666926115074 1.54388754268049 1.51205887432198 1.54806542094139 1.03546583354946 1.46930113179711 1.65290674159877 1.38647079495732 1.02981188736113 1.64301609885447 1.56542845613421 1.83512383331365 1.77358964674547 0.183770094794359 0.178421122082474 0.179388928244944 0.183984131007118 0.184669532917420 0.187900751262159 0.184299140397089 0.176833066390058 0.18002363616333 0.191191885033195 0.184526426891132 0.185593629423174 0.187053273233128 0.184653227457157 0.194314490501336 0.175799197903602 0.185630809846667 0.178333071431169 0.176970991595906 4 4 + 1401162 1401541 1401323.4 1400832 1401584 + gene protein_coding_gene FALSE TRUE AT4G03170.1 DNA binding similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G20600.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.0527544095676748 -0.580622816950263 0.573323054174061 1 -0.442184326587809 3.16956656097778 -0.0527544095676748 0.0677859223041748
AT1G16370_at 0.813344423488806 0.456427350157348 0.392545720807887 0.270202442051389 0.703662116088932 0.537836322123968 0.505432726013186 0.446147803862994 0.40123258049427 0.512127023905972 0.404140900904384 0.757464880620248 0.756215496639841 0.516123004032753 0.609255208770336 0.812059308607742 0.719257880165436 0.510434526856507 0.434977439743360 0.201335679333614 0.202186955326525 0.205176500122221 0.199873810644840 0.199873810644840 0.201884098963918 0.199873810644840 0.204830851861907 0.211816168554187 0.206470055532202 0.212106245908428 0.207399803211220 0.203293198951022 0.203578996060125 0.201757710366914 0.200928197547606 0.200512050894612 0.204615793111568 0.209532996857171 1 1 + 5597778 5598289 5598048.182 5596688 5598441 + gene protein_coding_gene FALSE TRUE AT1G16370.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G79410.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.0534483969154579 0.580592150165231 0.573343003507265 1 -0.442201779041776 1.05823215417724 0.0534483969154579 0.072056140707675
AT3G05610_at 1.00488007527707 0.593253919551362 0.979141973554822 0.97886455285044 1.12015122873412 0.962521285420014 1.27687382855126 0.806593273325035 2.36078669832743 0.494670930987129 0.961223836739683 1.25956076207315 1.27806130456355 1.09047833983411 0.923130540378823 1.16770550320119 1.47329132473345 1.35538682095025 0.612333771582822 0.212602964096831 0.218676890159360 0.207720959191429 0.21897825669519 0.207720959191429 0.210756296477600 0.211414571831459 0.210596379620056 0.220606640646879 0.21548993625596 0.210780763667755 0.207720959191429 0.213111088164523 0.218554329445272 0.216378297512788 0.211360206080083 0.221068814339353 0.207720959191429 0.211314240024488 3 3 - 1625903 1626414 1626142.455 1625678 1628179 - gene protein_coding_gene FALSE TRUE AT3G05610.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G27870.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE85690.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0612219115285749 0.580053578389477 0.573693416106994 1 -0.442508139448312 2.13755265267055 0.0612219115285749 0.111542714631735
AT3G53760_at 1.28611508801559 1.55977690589624 1.44151045243746 1.55017749867273 1.42593725161867 1.26556884893395 1.64105620209190 1.20834009586310 1.60262435837111 1.23263042415943 1.16723908730956 1.48054850003177 1.09009285879661 1.15131290879214 1.96654261167281 1.25256730617034 1.54626667477593 1.36034400941337 1.63183456869334 0.201074162133674 0.199803224798173 0.208071161824591 0.199803224798173 0.206930156309842 0.208011458785038 0.212332866553896 0.201964792650508 0.202260135520921 0.205873938261495 0.206117873721667 0.207476820122394 0.215082418010305 0.200938316339068 0.217057766181290 0.211625652888753 0.201721721310533 0.210591125782955 0.203379272280170 3 3|0 -|/ 19929374 19930057 19929691.111 19928832 19933343 - gene protein_coding_gene FALSE TRUE AT3G53760.1 tubulin family protein Identical to Gamma-tubulin complex component 4 homolog [Arabidopsis Thaliana] (GB:Q9M350;GB:Q6NLC2); similar to tubulin family protein [Arabidopsis thaliana] (TAIR:AT5G17410.1); similar to Os05g0154500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054682.1); similar to Gamma-tubulin complex component 4 homolog (GB:Q9SC88); contains InterPro domain Spc97/Spc98; (InterPro:IPR007259) -0.0575945495859896 -0.579870142848267 0.573812791811288 1 -0.442612423936103 2.85525730712201 -0.0575945495859896 0.0947323059932134
AT4G26970_at 10.4088104678060 10.4117237498478 10.4994793164155 10.5889777628156 9.98077578468072 9.930601399662 10.1506959461560 10.3867633510857 10.5162490568158 10.4139624369980 10.5392578536011 10.5713995599213 10.2151339890788 10.3949625817284 10.3522663863602 10.3286930080692 10.0630434699999 10.4086822029922 10.1757285954852 0.0661234167942035 0.0596711091606019 0.0660153481822781 0.0613137757149357 0.0610904903712178 0.0616466688742263 0.0642628097847373 0.0600588589870354 0.0625570313146559 0.0596711091606019 0.0608701594183595 0.0615553040501915 0.0623858321930660 0.0641552835057417 0.0643807723670885 0.06166620482755 0.067377445888985 0.0649941428755428 0.0606357388637352 4 4 + 13547726 13548394 13548112.364 13542924 13548635 + gene protein_coding_gene FALSE TRUE AT4G26970.1 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Identical to Aconitate hydratase 3, mitochondrial precursor (EC 4.2.1.3) (Citrate hydro-lyase 3) (Aconitase 3) (ACO3) [Arabidopsis Thaliana] (GB:Q94A28;GB:Q9SZ36); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT2G05710.1); similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:P49608); similar to Putative aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:Q6YZX6); similar to aconitase-iron regulated protein 1 [Citrus limon] (GB:AAC26045.1); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573); contains InterPro domain Aconitate hydratase 1; (InterPro:IPR006249) -0.0495033138972987 -0.579567123832298 0.574010019197239 1 -0.442784624936172 20.6586417612596 -0.0495033138972987 0.0445472916597285
AT2G46740_at 0.203196344109298 0.593550672969047 0.720294420211727 0.406532696801757 0.221427599868337 0.981285003515434 0.355867912228958 0.465109591455136 0.489187291594889 0.612874099844363 0.0583136110869328 0.39890275040858 -0.200954314666847 0.135832351213388 0.217873479150681 0.126606152330127 0.343787932123787 0.347063199307978 0.404296743868765 0.204607660441331 0.204607660441331 0.206818328226631 0.207935571652221 0.204607660441331 0.208207835714080 0.207565001692174 0.209054092831805 0.211030463385500 0.206409668813279 0.207799286271749 0.206874209752443 0.213876711705378 0.204607660441331 0.204607660441331 0.209066895339572 0.206833955444625 0.210559625373909 0.208382187338764 2 2 - 19212260 19212802 19212616.909 19212227 19214525 - gene protein_coding_gene FALSE TRUE AT2G46740.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46750.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46760.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G56490.1); similar to Os08g0114300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060850.1); similar to Putative FAD binding domain containing protein, identical [Solanum tuberosum] (GB:AAV31183.1); similar to Os03g0563100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050492.1); contains InterPro domain Plant-specific FAD-dependent oxidoreductase; (InterPro:IPR010030); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) -0.0728687167039867 -0.579431922963266 0.57409802984933 1 -0.442861430319279 0.833681791922628 -0.0728687167039867 0.158620430261397
AT2G33760_at 1.96410227437500 1.8312557390252 1.78916888991493 1.770968256783 1.56177361336232 1.8157498347943 1.81852035646562 1.46255972545498 1.69631033670656 1.52733879856008 1.24873130216014 1.89518632850139 1.40481253485935 1.38033322390109 1.64841493799741 1.37827950276312 1.52650304940888 1.36955805877750 1.44407789626658 0.219231636761425 0.219533976005352 0.218085971553232 0.218085971553232 0.218697758843254 0.221721399977069 0.221110827786057 0.231461036871395 0.231342688707849 0.218085971553232 0.219892043653685 0.218085971553232 0.221645514447095 0.220779390476889 0.218085971553232 0.218085971553232 0.225869983951034 0.223205490640420 0.223110806153495 2 2 + 14284073 14284598 14284306.727 14282876 14284627 + gene protein_coding_gene FALSE TRUE AT2G33760.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Os12g0181900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066318.1); similar to Os06g0185800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057005.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.054563009165761 -0.579373106158502 0.574136319644372 1 -0.442894837942129 3.27045552517551 -0.054563009165761 0.0791507758858074
AT4G20330_at 7.99189886710052 7.8979089036424 8.25357854107061 7.9176466333932 8.53255314193272 7.61287220939654 7.9271014455268 7.64054917461794 7.13129576058376 7.34458204221913 7.40564429069408 7.18554784095856 7.23231359025535 7.41281078647228 7.21274235008532 7.46558852326084 6.94912570395485 6.9240837779229 7.3710158923149 0.192465144923444 0.190059118988715 0.195165091339708 0.199455961847847 0.189730306917313 0.199320228423211 0.186733650184508 0.185925229453754 0.208658612857359 0.193784442237226 0.186512562565998 0.183294482206671 0.192584176533161 0.199601053117751 0.185906806638174 0.183294482206671 0.211040541050098 0.189549455757088 0.194105460347687 4 4 - 10982696 10983683 10983073.182 10982528 10984532 - gene protein_coding_gene FALSE TRUE AT4G20330.1 transcription initiation factor-related similar to transcription initiation factor-related [Arabidopsis thaliana] (TAIR:AT4G21010.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71261.1); contains domain FAMILY NOT NAMED (PTHR12716); contains domain SUBFAMILY NOT NAMED (PTHR12716:SF4) 0.0779911216521407 0.579361431446424 0.574143920057278 1 -0.442901468737184 15.2246536177467 0.0779911216521407 0.177295291189888
AT2G39020_at 5.06755707110438 5.51035191194159 4.95304538176394 4.89754321464769 5.30666680115708 4.91122979705912 5.84152582716276 5.89469259869963 4.24931235383982 5.42632771977042 5.91046087443116 5.68692728915347 5.5436369802902 5.3963535797209 5.61019069011824 5.3236724294733 4.8567770751005 5.08243719474642 5.27530903372445 0.233406049033061 0.233790789268545 0.241588738959116 0.239091174201359 0.232676733413197 0.255798594514488 0.239052320823258 0.241116636143978 0.256873815123917 0.238035656383091 0.23208728716756 0.236705486452048 0.236721065472677 0.237038641527431 0.233846241527268 0.236832701646335 0.257805873315286 0.253001450517943 0.237471297897470 2 2 + 16302591 16303131 16302844 16302393 16303406 + gene protein_coding_gene FALSE TRUE AT2G39020.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G39030.1); similar to GCN5-related N-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94015.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.0593766209428778 -0.579148847144494 0.57428232515319 1 -0.443022186717644 10.5028049337291 -0.0593766209428778 0.103593836431226
AT3G06490_at 1.56719209788937 1.22427180237083 1.43318229544989 1.51702497838227 1.34013461125241 1.35647695365850 1.27829338548875 1.45331056355395 1.55507537936292 1.79244291500176 1.40471836720888 1.45101431909046 1.71974424344535 1.54625172158831 1.48325316954007 1.11175699342623 1.64676821781638 1.41391084781278 1.47772208255912 0.185174617315918 0.174731646824413 0.180380290312266 0.176741220629561 0.179735005369359 0.183451196626690 0.183251194396299 0.183910670769892 0.183839739140743 0.179432387383177 0.178793985567529 0.174776830283463 0.180746827813533 0.180639092217407 0.178009180737415 0.174894450158649 0.175339483713968 0.190592137972418 0.180225067225602 3 3 + 2005812 2006311 2006074.091 2004150 2006630 + gene protein_coding_gene FALSE TRUE AT3G06490.1 MYB108 (BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108); DNA binding / transcription factor putative transcription factor MYB108 (MYB108) mRNA, similar to AtMYB78 (myb domain protein 78), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G49620.1); similar to Cpm7 [Craterostigma planta (GB:AAB58314.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0526492383117531 -0.57865893985535 0.574601352827606 1 -0.443300227286574 2.93653118298858 -0.0526492383117531 0.0682463198666329
AT2G07760_at 1.06697323184070 1.31881838167747 1.65165480736511 1.38948282554474 1.07185109823298 1.52716246269681 1.50008530628296 1.29376371115165 1.90054261400353 1.63182309186644 1.72578166947423 1.76569575778703 1.65510482585687 1.88642874561899 1.64471377822425 1.72946247290530 1.49205581106345 1.43238042151921 1.45208965663998 0.192302025587538 0.198579802763298 0.196004420874274 0.194197827538989 0.188486207814083 0.190541617517763 0.192295128539813 0.188486207814083 0.198187625697153 0.195085663502053 0.193126024059376 0.198658378040723 0.190540400547149 0.195052849125784 0.188512593274787 0.194996768234261 0.190891269723854 0.188486207814083 0.192927310481296 2 2 - 3584424 3585029 3584731.182 3584417 3586275 - gene protein_coding_gene FALSE TRUE AT2G07760.1 zinc knuckle (CCHC-type) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28823.1); similar to putative DNA/RNA binding protein [Brassica napus] (GB:AAM82603.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.0600477275956153 0.578560290316652 0.574665605008159 1 -0.443356187927021 3.01644300617046 0.0600477275956153 0.106963625752675
AT1G47730_at 0.851693532561748 0.985027574406458 0.820609406512457 1.09628050819354 0.669491696705754 0.766807437217716 0.512718810136916 0.827237940114177 0.73374345085298 0.899920437542423 0.615109395459616 0.224172708467983 0.832379668840967 0.677272992643469 0.362279171196856 0.327588938776194 0.655524047202587 0.87249775883253 0.536743317531684 0.206765632784970 0.207226506897585 0.214648995769367 0.211631033661776 0.206765632784970 0.211172248851788 0.206765632784970 0.207881479142917 0.212536699046603 0.206765632784970 0.208560143845612 0.214355602798836 0.212047951273034 0.209702270858671 0.21198180590774 0.208870253500439 0.216900977202204 0.209915948837042 0.211565181704916 1 1 - 17566371 17566902 17566587.364 17566371 17567546 - gene protein_coding_gene FALSE TRUE AT1G47730.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G48060.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0542440928061478 -0.578515012608039 0.574695096477283 1 -0.443381869493134 1.46339444014104 -0.0542440928061478 0.077810187953137
AT2G01770_at 0.808866994955158 0.882134786524945 0.910071013549151 0.773806002130595 0.673968095924106 0.87362373870264 0.825511580763693 0.947111560488693 0.566826864306911 1.04403778735992 0.680512604783197 0.466039759648113 1.31736284258635 0.876927265071418 0.985593562450867 0.499654179259697 0.64598422622967 0.990588098838 0.339326434936076 0.23250618081285 0.232970466599456 0.236925056236937 0.242433160195560 0.231676449866409 0.235456777552925 0.23543161588782 0.237676461003442 0.238330555166223 0.235291998728065 0.236709389750862 0.231414504622777 0.243320188565789 0.234248245030037 0.234742034058478 0.238301904571090 0.236210965316609 0.236707756022297 0.237652971919349 2 2|0 -|/ 334790 336215 335240.333 334771 336437 - gene protein_coding_gene FALSE TRUE AT2G01770.1 VIT1 (VACUOLAR IRON TRANSPORTER 1); iron ion transporter Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane. similar to Os04g0463400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053010.1); similar to protein of unknown function DUF125, transmembrane [Solibacter usitatus Ellin6076] (GB:YP_821467.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) 0.0498650518588063 0.57844936145742 0.574737859566488 1 -0.443419103556912 1.56583497807623 0.0498650518588063 0.0485125202342485
AT4G37480_at 4.22393190557294 4.17728170169184 4.38320109190562 4.19468463493336 4.51368466793388 4.50901440383177 4.05914349063004 4.39458257890552 4.64677753669226 4.10557805622421 3.95035901146597 4.01316505898296 4.2383001351518 4.32668480992064 3.70943961012386 4.31458970952319 4.3120824711533 4.1369969862018 4.49710139963592 0.189972604037532 0.190937672623527 0.191631875522902 0.196296645045449 0.190872895346315 0.195911368831965 0.193155241397199 0.193882425743536 0.1952937358656 0.197174929768915 0.196320140374538 0.192695258712792 0.188795381624609 0.19664730160855 0.194410089927988 0.190200862152282 0.188795381624609 0.195216359167912 0.192765783466947 4 4 + 17620395 17621326 17620917.727 17619255 17621396 + gene protein_coding_gene FALSE TRUE AT4G37480.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT3G17830.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE85762.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0524360798338082 -0.578344879165195 0.574805919584336 1 -0.443478352555494 8.5777845035504 -0.0524360798338082 0.0670809276461617
AT4G12790_at 8.96628686989395 8.95280908069833 9.07045674998806 9.12169965116854 9.615282999417 9.02565963090906 9.3241848751359 9.10366611658725 9.11358896701664 8.98560565800963 9.2126050007558 9.20012311068738 8.78870324774064 8.98042584676356 9.03214423852378 9.11771541091486 8.62918853713207 9.05829577823081 8.90967016246467 0.128546858732105 0.129733323888938 0.138532489031533 0.131739665255506 0.129599696492413 0.133526759096995 0.129428226471520 0.125912208240636 0.135541065460129 0.130320228423825 0.128361532471679 0.131647659960793 0.134765643223227 0.13308958710364 0.127147071430645 0.129532489204424 0.140775784181950 0.127854229126846 0.129060472771469 4 0|4 /|- 7517279 7518069 7517744.333 7517052 7519419 - gene protein_coding_gene FALSE TRUE AT4G12790.1|AT4G12790.2|AT4G12790.3|AT4G12790.4 ATP-binding family protein|ATP binding similar to EMB1705 (EMBRYO DEFECTIVE 1705), ATP binding [Arabidopsis thaliana] (TAIR:AT5G22370.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98543.1); contains InterPro domain Protein of unknown function, ATP binding; (InterPro:IPR004130) 0.0604916197358885 0.577823220011691 0.575145794789364 1 -0.443774021071086 18.1501832844784 0.0604916197358885 0.109325046220917
AT1G73910_at 0.794595179976821 0.722710858972781 0.631803811899349 0.73232732827617 0.669463802209971 0.937626572779459 0.944752591048604 0.78100608388564 0.919805829632145 0.81289859868536 0.939488107246044 1.11786779644633 0.97915593853998 0.876197320583152 0.840984436776245 0.85161504244375 0.957189895363608 1.01934047371388 1.21317033527563 0.195794355320243 0.202687240113633 0.195794355320243 0.204598539550470 0.196080491363082 0.196184684677436 0.199079266041885 0.195970817548770 0.207422853746565 0.198609585916127 0.199139510872897 0.197091629189717 0.197491102190964 0.197459710678445 0.196020299984299 0.198013839138656 0.200285312641953 0.203949950658174 0.200807911241802 1 1|0 +|/ 27793123 27793824 27793476 27792954 27793848 + gene protein_coding_gene FALSE TRUE AT1G73910.1 ATARP4A (ACTIN-RELATED PROTEINS 4A); structural constituent of cytoskeleton Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. similar to ATARP4 (ACTIN-RELATED PROTEIN 4), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT1G18450.1); similar to Putative Acttin-related protein 4 (ARP4) [Brassica oleracea] (GB:AAW81736.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.0510945889108227 -0.57775149666094 0.575192533003481 1 -0.443814653252600 1.74162984409118 -0.0510945889108227 0.0584290884187499
AT4G39520_at 8.34261117144343 8.46258094843776 8.23508129634054 8.27885972624535 8.5831703784852 8.60037147329845 8.41608167398248 8.61879943812828 7.97542725659678 7.65822772249184 7.53807131373028 7.47289398730757 7.85882498242503 7.70388685804178 7.73234668527764 7.77555571143634 7.62206574023592 7.73632946605201 7.59355680453292 0.131242768299654 0.12599190052313 0.125285467674961 0.122699711384837 0.124506166672550 0.130268344169425 0.123864839028396 0.128934064122903 0.123694242529733 0.126248294423771 0.135237830610199 0.133204154118730 0.126270172182705 0.127338119490954 0.123456779196825 0.122471347175645 0.139875298569913 0.130345492647491 0.124747585650532 4 4|0 -|/ 18371660 18372122 18371960 18370962 18374198 - gene protein_coding_gene FALSE TRUE AT4G39520.1 GTP-binding protein, putative similar to ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G17470.2); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G72660.3); similar to AAA ATPase; TGS; GTP1/OBG subdomain [Medicago truncatula] (GB:ABE89416.1); similar to Os07g0627800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060347.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain GTP1/OBG domain; (InterPro:IPR006074) -0.0490273371080652 -0.577739840750132 0.575200128721628 1 -0.443821256026900 16.1533948987638 -0.0490273371080652 0.041569037099336
AT4G17710_at 0.976120062033818 1.03051181300795 1.15146129272839 1.64442087202063 1.16980761226408 0.860099890627716 1.26692126841606 1.32934352755572 1.05967350412495 2.02802816226717 1.17899355429669 1.34865770150081 1.10301657669414 0.881043536623396 1.09482571227317 1.53491892639915 1.08823058100557 1.75315071121923 1.17598817657732 0.226973059370548 0.213777600406742 0.218464741095128 0.221236168054571 0.216836664806972 0.214153951377729 0.219239753670246 0.218458123186442 0.218656102573099 0.213777600406742 0.218958796694457 0.219504719524083 0.220491024816039 0.215418546384562 0.220935898366772 0.213777600406742 0.233751616027853 0.215349057645496 0.218088333269388 4 4 - 9856343 9857044 9856635.7 9856309 9859301 - gene protein_coding_gene FALSE TRUE AT4G17710.1 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to HB-7 (homeobox-7), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G46880.1); similar to homeodomain protein GhHOX2 [Gossypium hirsutum] (GB:AAM97322.1); similar to homeodomain protein BNLGHi6863 [Gossypium hirsutum] (GB:AAQ16127.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.0588260179990717 -0.577590622802009 0.57529737322642 1 -0.443905773148565 2.51312809741080 -0.0588260179990717 0.101761884257775
AT4G35720_at 1.3342664095856 1.65345337821093 1.85207798182333 1.69946051420834 1.42088514857698 1.41367634449701 1.54000809334933 1.56248287319454 1.95750867504472 2.22284090115101 1.89249030897860 1.55832677351522 2.03764753394435 2.11740232202591 1.98582716515073 1.86159891138437 2.20200952846942 1.90918973875533 2.18713592677367 0.169319040454976 0.169324256894940 0.172468603280144 0.178503796705194 0.166058775136929 0.164277706136828 0.163472466598631 0.165021062612697 0.167300956768023 0.166991867120622 0.162033202016049 0.166360738122958 0.166279922428883 0.163684514715522 0.166775876522617 0.171795898762886 0.17684456379887 0.180500757520597 0.166910868358143 4 4 + 16928377 16928912 16928654.182 16927977 16929175 + gene protein_coding_gene FALSE TRUE AT4G35720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51400.1); similar to hypothetical protein [Glycine max] (GB:AAK01735.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) -0.0514806618435819 -0.577368754967601 0.575441979673525 1 -0.444031401419172 3.59356719439799 -0.0514806618435819 0.0613623372860634
AT1G23780_at 8.16583115122585 8.27468441932158 8.40130767619138 8.35782198220396 8.98807514768062 8.47728540724076 8.27251597029091 8.49395779306896 7.70720771168051 7.93806297651302 7.60160493646039 7.57674484827138 8.09459073807519 7.81376861314654 7.1642769720065 7.86319171373893 7.37809176916526 7.57515978987716 7.66993045363398 0.155538714912612 0.158681435888275 0.155728926971359 0.159164728464126 0.155377892238019 0.164546017689294 0.167416921198378 0.157623354788336 0.175623219604591 0.166011526889990 0.163535973371435 0.158701016889174 0.157244538032466 0.164993932742428 0.159788475916954 0.155377892238019 0.165634624639755 0.169283772642999 0.15836199725727 1 1 - 8407067 8407601 8407288.727 8406675 8408514 - gene protein_coding_gene FALSE TRUE AT1G23780.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G23770.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94799.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0580350892512602 0.576627592759371 0.575925188058338 1 -0.444450742253611 16.1315161366706 0.0580350892512602 0.0984561928384058
AT1G74220_at 1.37614395163477 1.13201663208113 1.56910279786827 1.67647663649962 1.55464200248319 1.81260166542518 1.52311544586687 1.46146806237326 2.46180747918768 2.12328371221749 2.43624868982792 2.26320434484698 2.19066629479358 2.14450429800746 2.30734033550336 1.74629359205916 2.06237563655616 2.02768418665346 2.38512050448106 0.190006228224189 0.188561313582746 0.192258863357291 0.188196849601834 0.189273080780673 0.190132265464887 0.186205442701654 0.187129731067340 0.203770993900999 0.186485063341647 0.187417435493457 0.198118734438202 0.185026176468927 0.194242865474099 0.185026176468927 0.191935628007152 0.198501041452288 0.187785941831727 0.189306179802868 1 1 - 27916761 27917389 27917061.636 27916760 27917795 - gene protein_coding_gene FALSE TRUE AT1G74220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G03630.1); similar to Os07g0298100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059417.1) 0.0519527631161623 0.576415050474143 0.576063797590754 1 -0.444570903123531 3.74854268473391 0.0519527631161623 0.0650903835778119
AT1G33350_at 1.69227790383608 1.79734960528489 1.83016174565885 2.1433532559925 1.97829912088313 1.72842261281737 2.18708853645817 1.74147984372641 1.84191581597734 1.9402598352244 1.85732357474250 1.74873860439994 2.05985256722513 1.70311943741735 1.93650504784577 1.72125843823383 1.97258722124443 1.60006125020211 2.2458145329638 0.20253328159826 0.215361592549477 0.202421007307056 0.203605566526805 0.202459503756128 0.206655219082468 0.200803167379411 0.206858918362167 0.203828542812430 0.203247705392972 0.202592763952343 0.207827126210985 0.209001588205029 0.203469890147035 0.198955800628071 0.198896953337201 0.202076110597169 0.208159203892825 0.204406602497323 1 1 - 12090051 12090556 12090287.182 12089383 12091667 - gene protein_coding_gene FALSE TRUE AT1G33350.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G20540.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE78713.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0594445411065287 -0.576264389271217 0.576162062250136 1 -0.444656054375745 3.80443449260837 -0.0594445411065287 0.105284153584728
AT1G06270_at 2.50720632570281 2.94634963106611 3.11892560696108 3.19634941826928 2.89555296527634 3.04438810955657 3.03795343343534 3.72208524464298 2.77794658591768 2.76356950495923 3.03553531998911 3.20521194237328 2.97031794458269 3.18931276990613 2.76442287048240 2.93036479051711 3.15454609659900 2.71884313889142 3.06692495409135 0.182827445116413 0.1906409888909 0.185370947297284 0.197934920051040 0.189061532310374 0.190645545067575 0.190662543482467 0.19118820151346 0.191931121881919 0.19542914499339 0.183706597016399 0.186357664652439 0.184637277911226 0.189816715590515 0.195445724632195 0.185282170849195 0.189471922754348 0.194127622461398 0.194757116748062 1 1 - 1918266 1918816 1918562.091 1918087 1919759 - gene protein_coding_gene FALSE TRUE AT1G06270.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE79475.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0684971885744525 0.575795611611128 0.576467867506845 1 -0.444920866532175 5.99137619560901 0.0684971885744525 0.143648873229349
AT2G26590_at 7.4700226396469 7.67028978565937 8.25323598491466 7.82299824296735 7.96362072935428 7.43508855950257 7.87502483847799 7.67777419997861 6.58997245003998 7.13957760282494 6.85217520546539 7.08383848961454 7.0529242213404 6.89930706796199 7.09448847271362 6.80612151822783 7.05667934376729 6.59395696918106 7.25961938194944 0.205496574056437 0.187459892132539 0.199343396006686 0.19310916725561 0.191503042780299 0.197028404560171 0.192828524185321 0.188092601819190 0.217856519300003 0.187459892132539 0.195053841034746 0.19268479635823 0.193263887545942 0.206405214680312 0.193217157291676 0.190175038049680 0.204575463517167 0.195117194043917 0.187459892132539 2 2|0 -|/ 11318283 11320813 11319196.125 11318082 11322174 - gene protein_coding_gene FALSE TRUE AT2G26590.1|AT2G26590.2|AT2G26590.3 adhesion regulating molecule family similar to Adhesion regulating molecule [Medicago truncatula] (GB:ABE79214.1); contains InterPro domain Adhesion regulating molecule; (InterPro:IPR006773) 0.0645023063366132 0.575794719801765 0.576468449358544 1 -0.444921370122305 14.7341699838821 0.0645023063366132 0.127576094564178
AT3G43900_at 0.945321468245916 2.12139068793693 1.82980808375680 2.15583253056485 1.50397764560117 1.78862979870631 1.89757445065842 2.2345511771144 1.88600607932585 2.54373624406822 1.87384363453191 1.85546075336245 1.81274546388075 1.75186342865620 2.00808514516323 1.94764465641333 1.89160796060661 2.62133647626498 2.08816273682041 0.2941317928035 0.287617357357693 0.284678295747125 0.284678295747125 0.286884164379368 0.286889156459889 0.284678295747125 0.290635233395829 0.293018644528151 0.308811196978357 0.293439034435532 0.284678295747125 0.302685824465878 0.284678295747125 0.293978655598395 0.292564793881021 0.290246074531754 0.284678295747125 0.290815222919284 3 3 + 15757843 15758056 15757957.167 15757827 15758081 + gene protein_coding_gene FALSE TRUE AT3G43900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43910.1) -0.0912295057715999 -0.575771557790954 0.57648356128132 1 -0.444934449074324 3.88111496028881 -0.0912295057715999 0.224572078527554
AT1G31080_at 1.28563330437743 1.28966096338598 1.44015358302666 1.67583650183753 1.38604081113890 1.60417832674716 1.47413450551037 1.21134189487464 1.68755969617177 1.91941949743676 1.76202111904856 1.08666816460214 1.99887182870668 1.64358812404469 1.41685728117242 1.71150051744237 2.19139409353876 1.39392024473268 1.66127335570853 0.17358609379088 0.187319511459187 0.182253639532786 0.176798470471050 0.178317120255052 0.17358609379088 0.174049033322232 0.17358609379088 0.178882619125699 0.173737497334157 0.174510200804274 0.17358609379088 0.185363117329853 0.176221653621577 0.17358609379088 0.176402694148841 0.189513570191033 0.188079028399866 0.174849298249160 1 1 + 11092299 11092843 11092582.455 11091813 11092880 + gene protein_coding_gene FALSE TRUE AT1G31080.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G31090.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0529390636029025 0.575494689467505 0.576664218982596 1 -0.445090750874147 3.1242159137457 0.0529390636029025 0.0718138473552352
AT1G10330_at 2.83309725799409 3.05983084898423 2.78618599304856 3.10215026078371 2.91491997314668 3.15606308222603 2.55027669070696 2.95027921175676 3.32848476603962 2.87655673862273 3.07250735659823 2.71078489087339 2.89462356475677 2.84858611504057 2.71488878114075 2.92540318991109 3.0834672173704 2.76835759649745 3.20730482749754 0.233871118611752 0.228610372218628 0.232052040855571 0.232094765896548 0.228050215400735 0.232706259430223 0.230626156068062 0.228831376380027 0.233869553130369 0.230637615362458 0.226461471570552 0.228294696591503 0.230344726878172 0.236640094311096 0.231107753935860 0.228706083324976 0.231576719847878 0.230495890433196 0.227431030477884 1 1 + 3389627 3390125 3389831.182 3388749 3390152 + gene protein_coding_gene FALSE TRUE AT1G10330.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE89006.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0593313067111545 -0.575387219133219 0.57673435202959 1 -0.445151402647778 5.92648847303598 -0.0593313067111545 0.105178740353976
AT2G23160_at 1.96489198956190 2.22836279363413 2.31224547040141 2.60460342369851 1.74314933451311 2.05692395192314 2.00341256564235 2.04943156123261 2.25012743370149 2.48620958157732 2.25749041748535 2.1709384166553 2.44650041715684 1.79053754835026 2.11319122040866 2.32468085553816 2.21187338730796 2.26681421422899 1.8757584895104 0.235627441692213 0.235627441692213 0.237178729654487 0.240190151591315 0.237495948238518 0.2416693847968 0.237198617079775 0.23855511361587 0.249433502245111 0.235974935859025 0.244310922834704 0.235627441692213 0.235627441692213 0.237579380553724 0.238563281768113 0.235627441692213 0.241027438752486 0.240529776479899 0.238426304301736 2 2 + 9870198 9870737 9870559.111 9869550 9870824 + gene protein_coding_gene FALSE TRUE AT2G23160.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G16450.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0557136461640012 0.575300350339191 0.576791044271371 1 -0.445200420018298 4.32127020861148 0.0557136461640012 0.0874674999659928
AT1G65880_at 1.63612055731564 1.19619372592601 1.59783314398321 1.57161931860662 1.29959253489854 1.31978332721988 1.36036103995145 1.19965824441971 1.79554982228558 1.36586234962809 1.79483965116447 1.40124963025454 1.25640258248937 1.85179945474015 1.32826266671734 1.50201628490095 1.49755268276935 1.54134687636249 1.37380066858155 0.172530336472820 0.174312836648842 0.179789997587075 0.170376439750466 0.174816296273727 0.172489518043430 0.170552464357159 0.174068031328344 0.178878378248851 0.172478212544307 0.175762384605697 0.176695137080325 0.192852940720238 0.182056915111256 0.174787874178697 0.174813029503339 0.175331972582086 0.178593861659901 0.174526615696054 1 1 - 24512296 24512865 24512635.636 24512296 24514405 - gene protein_coding_gene FALSE TRUE AT1G65880.1 AMP-dependent synthetase and ligase family protein similar to acyl-activating enzyme 11 (AAE11) [Arabidopsis thaliana] (TAIR:AT1G66120.1); similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G68270.1); similar to acyl-activating enzyme 12 (AAE12) [Arabidopsis thaliana] (TAIR:AT1G65890.1); similar to Os09g0555800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063895.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); similar to Os03g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048852.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0545349022251428 0.575068173965833 0.576942581762693 1 -0.445331395935349 2.91435590762675 0.0545349022251428 0.0812538803455183
AT1G30780_at 0.968672171241384 0.90276000313371 1.01830143326479 1.03774634645300 1.24664678161692 1.79794591163332 1.24396141512670 1.13844097307626 1.62928336952777 2.03305598850512 1.29664301766420 1.55375901308274 2.36552853956293 1.75941598563466 1.70042138663278 1.58884304986393 1.39324725257491 1.46120972017203 1.54617938279354 0.262366416743169 0.262719617602930 0.281042446641538 0.255729418340592 0.256687702262609 0.271008726756418 0.267106517252091 0.255729418340592 0.262256322806646 0.263868861124215 0.266503282053943 0.256521143420062 0.255729418340592 0.256448627194567 0.255981149970917 0.278510898009251 0.27245663315891 0.269230795867820 0.27217301663863 1 1 - 10924152 10925304 10924754.571 10923901 10926543 - gene protein_coding_gene FALSE TRUE AT1G30780.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G30790.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.0577060298186046 0.574575506652608 0.577264208188772 1 -0.445609156627107 2.85733758407193 0.0577060298186046 0.0978620394982996
AT2G16800_at 7.89293860229886 8.10771226059243 7.82709936203157 8.06442640876174 8.31809738023508 8.05937627390015 8.25777696565235 8.35512930990501 7.70874153201797 7.7304121700473 8.04570610988613 8.0392764798685 7.94146761550596 7.99623102801767 8.23106381649102 8.00976351867812 7.89524790760859 7.62921636026448 7.90457298265348 0.174649986527704 0.163960572448370 0.175026418281746 0.180454383917567 0.173276036904721 0.174930851889943 0.167304723554761 0.171241391155709 0.163302149086407 0.180323059961258 0.163188707691995 0.169074698471972 0.177970748108338 0.169835084290379 0.172152205946182 0.163188707691995 0.185566323976800 0.182528862085006 0.176841306287268 2 2 + 7293683 7294238 7293968 7292818 7294447 + gene protein_coding_gene FALSE TRUE AT2G16800.1 high-affinity nickel-transport family protein similar to high-affinity nickel-transport family protein [Arabidopsis thaliana] (TAIR:AT4G35080.1); similar to Os03g0156700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049011.1); similar to Os06g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056620.1); similar to Cation transport ATPase (ISS) [Ostreococcus tauri] (GB:CAL57572.1); contains InterPro domain High-affinity nickel-transporter; (InterPro:IPR011541) 0.0530574739602243 0.574299437412654 0.577444475777715 1 -0.445764704094562 15.9876889868120 0.0530574739602243 0.0731892225781648
AT1G33810_at 9.9647562398095 10.0792210231728 9.71837424775965 9.8180875758341 10.0103329331835 9.76343375816819 10.2332430108085 10.1774046923244 9.8364036023202 9.8897764573773 10.0661062516035 10.3065356498748 9.9335727506124 9.87335672192519 10.5519969016442 10.0590392023427 9.8972594002637 9.74276875533832 9.87583478268992 0.0827847396024201 0.0809539450117572 0.0818271488262906 0.0827871849587566 0.0828653592859851 0.0830854275573303 0.0837354663075506 0.084080112734332 0.0896263952896148 0.0870914234499652 0.0815263570557547 0.081237493531546 0.0842921165836803 0.0896829100281553 0.0823582740140809 0.0809539450117572 0.0854456402845709 0.0838326820770852 0.0832215276971425 1 1|0 +|/ 12265078 12266607 12265804.375 12265013 12266827 + gene protein_coding_gene FALSE TRUE AT1G33810.1 similar to hypothetical protein MtrDRAFT_AC124956g13v2 [Medicago truncatula] (GB:ABE86786.1) -0.0498039696938175 -0.574121750187703 0.577560517938696 1 -0.445864782508882 19.9311905526308 -0.0498039696938175 0.0510795853427802
AT2G02380_at 1.58884363752887 1.67524515424354 2.22446278547855 2.06245437233807 1.89428923272541 1.80853095865814 2.46050370283115 1.87424469408671 2.27739982229947 2.43980794366036 2.42431938436918 2.28679101947469 2.06036403404104 2.14685986418878 2.42112983626313 1.98925293212395 1.97660644105089 1.94420787626113 2.40252303106652 0.206361537525684 0.204053545808195 0.207286058012617 0.216240956542476 0.204053545808195 0.206373054521868 0.212287407588326 0.205231713629153 0.206489519722247 0.206425804983470 0.209797702994603 0.208013175060182 0.212963615744888 0.210974611169557 0.20750949809347 0.205570361017937 0.204053545808195 0.211474668359327 0.214745222619749 2 2|0 +|/ 627326 628536 627826.375 626841 628675 + gene protein_coding_gene FALSE TRUE AT2G02380.1 ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2); glutathione transferase Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Probable glutathione S-transferase zeta-class 2 (EC 2.5.1.18) [Arabidopsis Thaliana] (GB:Q9ZVQ4); similar to ATGSTZ1 (GLUTATHIONE S-TRANSFERASE 18), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02390.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60040.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.059663567704856 -0.574058950150071 0.577601533747781 1 -0.445900146307480 4.21328932847649 -0.059663567704856 0.107344966109375
AT2G13550_at 2.88251533397007 2.73476567496898 2.88880410012655 2.89700925712199 2.18415313570123 2.52678481628006 2.18041757604561 2.84914455770296 2.95810144802311 3.15421733852609 3.13337435398185 2.8809592993102 3.2309771024618 2.85553071940531 2.86146337464636 2.89181579770024 3.29510336078369 2.8957667956388 3.18496092952166 0.198818664480893 0.203006566798048 0.199446975317029 0.203864141276872 0.200461111681351 0.213643574037698 0.198818664480893 0.2100479221513 0.206728815507393 0.207235757080884 0.198818664480893 0.205461499871058 0.202318267828279 0.198818664480893 0.203861134872656 0.203051578335021 0.206715385554682 0.201372299843652 0.200551004943046 2 2 - 5655955 5656337 5656145.182 5655624 5656879 - gene protein_coding_gene FALSE TRUE AT2G13550.1 unknown protein -0.0654961732818508 -0.573935692395844 0.577682040111113 1 -0.445969544365779 5.69530785108034 -0.0654961732818508 0.132529768717598
AT2G37650_at 3.31546176296841 3.46787885668472 3.54384091718133 3.44091485466439 3.67585696261890 3.71655175150066 3.54479476216286 4.28027444640874 3.05595494744445 3.26002389357517 3.21436906555275 2.87856113748628 3.41053670361873 3.33437767799739 2.93677838292826 3.49997542856251 3.83486325404312 2.76800937277489 3.6058653587229 0.202295826338598 0.206915648768748 0.203115186414993 0.207866338176277 0.200446256039770 0.202924132456706 0.204922284698829 0.203104779654075 0.225293132357561 0.200446256039770 0.208866259723707 0.205227033098921 0.200446256039770 0.207600925470930 0.201095495762971 0.201204355457606 0.204929653467796 0.214595100081648 0.214769662880042 2 2 + 15801321 15801810 15801598.545 15799701 15802313 + gene protein_coding_gene FALSE TRUE AT2G37650.1 scarecrow-like transcription factor 9 (SCL9) similar to scarecrow-like transcription factor 14 (SCL14) [Arabidopsis thaliana] (TAIR:AT1G07530.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); similar to Os03g0690600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050952.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.0652044288042737 -0.573828893234174 0.577751801350715 1 -0.446029664420572 6.89417942816608 -0.0652044288042737 0.131386125150392
AT3G27950_at 1.08901634640008 0.903580288319574 1.06442343687518 0.95160068014649 0.963399326875435 1.33883714966174 1.04360666102798 1.10901986381360 1.21380994083677 1.58951011711339 1.3522716536839 1.00535314371158 1.50445351331312 1.57450090089639 1.67433368794776 1.22268869955838 1.32753832239174 1.66547207531636 1.25310779108418 0.169498131486552 0.168505752388401 0.169303931907895 0.169298424693233 0.169215109755686 0.171669618347267 0.170332505237321 0.167438707914140 0.16978089068211 0.171111717022481 0.173552497671683 0.170798302022941 0.166257739542506 0.166561250798346 0.172802873936500 0.169798306852259 0.166527999441267 0.174650619353152 0.171262803605715 3 3 + 10380295 10380946 10380642.455 10379285 10381133 + gene protein_coding_gene FALSE TRUE AT3G27950.1 early nodule-specific protein, putative similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G14450.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE87642.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.0534716208785129 0.573814490171225 0.57776120978186 1 -0.446037771481087 2.4419200271136 0.0534716208785129 0.0758974336587705
AT4G22280_at 1.95212667873240 2.3542610420353 2.33147330133495 1.97034342124536 1.97998449496644 2.07225179189876 1.91115145768870 2.18198640122277 1.47171752489641 1.92059772129704 1.63516722413055 1.49768281504006 1.74638936651905 1.57653194181237 1.47589040647982 1.76013803588059 1.48815637112652 2.20672680504762 1.94921515176356 0.232859373277446 0.226319635607961 0.227181523702845 0.223567317280288 0.225431665402775 0.230232033187604 0.222444933451296 0.227105946590941 0.231412593725925 0.225195970348129 0.232461032189901 0.225361350040622 0.222353859933929 0.22335260477908 0.230458041350413 0.222871043373330 0.231371475065345 0.231521191154725 0.229243645553535 4 4|0 -|/ 11776087 11776852 11776449.3 11775981 11778135 - gene protein_coding_gene FALSE TRUE AT4G22280.1|AT4G22280.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G58920.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE81802.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101)|similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G58920.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE94717.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.0592714522280902 -0.573443342148159 0.578003681120218 1 -0.446246614031349 3.82112007534404 -0.0592714522280902 0.105831332708236
AT1G56200_at 10.2900282874411 10.3372822634443 10.1888191576861 10.0646487897532 10.5426268183932 10.5586655634559 9.62749914777506 9.8489148123282 10.4742815924892 10.4810791260642 10.5165523812671 10.3912188821329 10.2059136863887 10.3551285051706 10.3119374861293 10.3377224858514 9.8621503201816 10.0391956807772 10.4463587284626 0.0853971073626289 0.0840824871333121 0.0892757556989663 0.084092112659459 0.0893710950653204 0.0906193860810038 0.090129467043758 0.0883220253117744 0.0943816353688791 0.0840824871333121 0.084605775885754 0.0847267040517948 0.0855739175186147 0.0840824871333121 0.0893143296778928 0.0840824871333121 0.0958010267592566 0.0929039334624223 0.0863117962305121 1 1|0 +|/ 21034517 21035480 21034939.889 21034459 21035743 + gene protein_coding_gene FALSE TRUE AT1G56200.1|AT1G56200.2 EMB1303 (EMBRYO DEFECTIVE 1303) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30475.3); similar to Os02g0152900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045922.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38599.1) 0.0489982836951435 0.573364806851465 0.578054995313215 1 -0.446290789096716 20.5421692271143 0.0489982836951435 0.0447718056246472
AT1G11540_at 2.30760947932714 2.31214462576033 2.43485001894721 2.45397590843958 2.31143551442540 2.6405605261403 1.94091506895628 2.45060920484882 2.44265188029342 2.24433095857352 2.12422257160003 2.14213594822458 2.31736133778343 2.08213616135426 2.44250630902387 2.36042339473471 1.92101853228858 2.45412489832427 2.27212645712609 0.222290344613878 0.221131229457143 0.234831916469318 0.230336267311776 0.221998055680779 0.233087768991861 0.232857456920357 0.228315860208992 0.230036492350568 0.227042453034538 0.22979796297675 0.234350785264042 0.221131229457143 0.227316854312118 0.235867482911165 0.224933642731865 0.236965034331225 0.228062620659299 0.237240104169442 1 1 - 3875559 3876226 3875861.545 3875442 3877155 - gene protein_coding_gene FALSE TRUE AT1G11540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61740.1); similar to membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53257.1); similar to Os01g0786800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044474.1); contains domain Multidrug efflux transporter AcrB transmembrane domain (SSF82866); contains domain SUBFAMILY NOT NAMED (PTHR14255:SF10); contains domain FAMILY NOT NAMED (PTHR14255) 0.0590869713836762 0.57328361155837 0.578108050096678 1 -0.446336454414504 4.63160966477116 0.0590869713836762 0.105051130359280
AT1G51400_at 13.2551919080729 13.3536489048080 13.0974092855377 13.2052778276258 13.2304788636947 13.3375023171346 13.3733012902633 13.5730420979982 14.0296344840450 13.9458191841112 14.1796700340457 14.1229172920454 14.0110459735358 14.0954769929007 14.0585720325969 14.1028346232351 13.8034967674559 14.2113162199887 14.0258058968515 0.0507315621531392 0.0473481152699403 0.0507564661181868 0.0491173983454233 0.0483156725213672 0.049097999358769 0.0474587383675699 0.0506330827867295 0.0501499447441602 0.0478391644419184 0.0469361827603932 0.0474567900438229 0.0477935852419335 0.0479769498623639 0.0480563437169176 0.0469361827603932 0.0509822562119467 0.0489310708419829 0.0487004234611232 1 1 - 19055848 19056134 19055992.364 19055691 19056250 - gene protein_coding_gene FALSE TRUE AT1G51400.1 photosystem II 5 kD protein similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1) -0.0491912949072293 -0.573146229367621 0.578197824591276 1 -0.446413706193521 27.3400246103809 -0.0491912949072293 0.0466541420055588
AT4G38590_at 3.63664214407673 3.40135285232133 3.16612756087111 3.38849802301453 3.37890373621915 3.52754761814434 3.4247129965017 3.21115701402318 3.82360881173257 3.60239582706888 3.73353228482884 3.67406149658709 3.55938356950366 3.98906145068792 4.42046672340611 3.74432383061373 3.94235496163589 4.03236867680165 3.75900482184429 0.200409606535343 0.212343310729400 0.210496052635968 0.205478890127756 0.225082986296564 0.209790207255946 0.212580970612309 0.214109919964564 0.212823103653491 0.207800012564139 0.210559771986748 0.203609897710856 0.208015517744010 0.205077171129999 0.210158108309114 0.200265540486036 0.200265540486036 0.200265540486036 0.202440610383174 4 0|4 /|+ 18040427 18040795 18040550.9 18036086 18040922 + gene protein_coding_gene FALSE TRUE AT4G38590.1 BGAL14 (beta-galactosidase 14); beta-galactosidase putative beta-galactosidase (BGAL14 gene) similar to BGAL11 (beta-galactosidase 11), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G35010.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G77410.1); similar to BGAL13 (beta-galactosidase 13), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G16730.1); similar to D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like [Medicago truncatula] (GB:ABE85265.1); similar to beta-galactosidase [Gossypium hirsutum] (GB:AAS76480.1); similar to putative beta-galactosidase [Nicotiana tabacum] (GB:CAC13966.1); contains InterPro domain PRP1 splicing factor, N-terminal; (InterPro:IPR010491); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) 0.0527053101038755 0.572840220259231 0.578397817855488 1 -0.44658571670341 7.19950804871652 0.0527053101038755 0.071877257159307
AT3G14380_at 2.44900055690304 2.6153180582417 2.52323600388792 2.90211038876831 2.32398096968604 2.47519454399873 2.50737849983503 2.53145062380786 2.99753057596753 3.26067408846296 2.85604296380541 2.97869421603641 3.04679764897927 2.72091711764675 3.13891776295603 2.74336500044297 2.74741003320156 3.43156396884688 3.027418748370 0.194706752790883 0.1929348507067 0.200250060326155 0.200489163665447 0.197380289041415 0.193068769762612 0.197660563324022 0.195453231704067 0.201808670283484 0.192439934697154 0.207202699438811 0.192439934697154 0.194900235181058 0.195177923861734 0.195262232815023 0.195149881921488 0.193767098692714 0.199197380509678 0.195549516891847 3 3 - 4803192 4803780 4803452 4802959 4803818 - gene protein_coding_gene FALSE TRUE AT3G14380.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT1G17200.1); similar to hypothetical protein [Gossypium hirsutum] (GB:CAC84114.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.0534503366945382 -0.572750059462293 0.578456749830539 1 -0.446636380491454 5.5675444022692 -0.0534503366945382 0.0763507141259895
AT2G16870_at 2.08831474267470 2.1404586895663 2.44326544806111 2.03701032798342 1.91352109434919 2.18595362775909 1.68354243117690 2.42829035082008 2.78080040958592 2.57133885760241 2.70233092089242 2.62261188076853 3.02591446959988 2.66227871579248 2.51475714842824 2.22402337863332 2.60578130945288 2.80704673341050 2.33843832027654 0.213376958100073 0.219542962512771 0.215740569783731 0.215459844152477 0.217165127914963 0.214956209812487 0.221144704981863 0.219513742154652 0.223601002663788 0.217300909717838 0.215537449997073 0.221701837292155 0.222042173376592 0.214587840862915 0.219591935773191 0.214485010657571 0.217183096093855 0.216223577796296 0.215769849923352 2 2 - 7315159 7315696 7315462 7315159 7318768 - gene protein_coding_gene FALSE TRUE AT2G16870.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63880.1); similar to RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G64070.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91519.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0709266390563523 0.572728777677297 0.578470660755163 1 -0.446648338211318 4.71960405510413 0.0709266390563523 0.154458550036550
AT3G26290_at 9.89076553817227 10.0415217922573 10.3616444937044 10.5720032911632 10.5991677884522 10.3681213269004 10.80499727691 10.7574290806181 9.55640048352556 10.3759674289368 9.96545840283037 9.56525750007342 9.97233484651094 10.0517713916054 9.54826051395235 10.1170682855910 10.3717859979095 9.85505284828586 9.85919964517213 0.0857635759880685 0.0861947817610492 0.0890909395241213 0.0929533987672992 0.088643132052135 0.0886485882494148 0.0892851934122787 0.0904027793962553 0.092923338748156 0.0857635759880685 0.087541410681372 0.0873773942932758 0.0910747817423108 0.0911506386093023 0.0910441563183138 0.0884392345924711 0.0953040307928243 0.0877927383470787 0.0872615853897105 3 3 - 9634054 9634544 9634271.091 9633919 9635707 - gene protein_coding_gene FALSE TRUE AT3G26290.1 CYP71B26 (cytochrome P450, family 71, subfamily B, polypeptide 26); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B26 (EC 1.14.-.-) (CYP71B26) [Arabidopsis Thaliana] (GB:Q9LTL0); similar to CYP71B35 (cytochrome P450, family 71, subfamily B, polypeptide 35), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26310.1); similar to CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26300.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0509535035994824 0.572689454123485 0.578496365227607 1 -0.446670432068879 20.3551544448004 0.0509535035994824 0.0605996496363758
AT3G11980_at 1.0874255748709 1.41551985713026 1.31807596719128 1.23921848246239 1.18960336372108 1.36261998966857 1.30582172776822 1.09505325574391 1.45108620609184 1.82120335558447 1.51802774196392 1.39698350596978 1.63898600066033 1.03990420922993 1.18213877287944 1.57239339631975 1.22171989481581 1.78828096547879 1.46063341622957 0.195861076327079 0.204288913276962 0.199667972745615 0.198579692370843 0.198434269704153 0.199771919029975 0.195448174192558 0.195166670685426 0.213022002255239 0.199496603309074 0.204307847608731 0.195166670685426 0.200469611371930 0.203379963934378 0.198788287006424 0.198691144143040 0.204239755800767 0.201061616057599 0.208853345752169 3 3 + 3816261 3816876 3816492.818 3814242 3817123 + gene protein_coding_gene FALSE TRUE AT3G11980.1 MS2 (MALE STERILITY 2) Similar to fatty acid reductases. Identical to Male sterility protein 2 (MS2) [Arabidopsis Thaliana] (GB:Q08891;GB:Q9LHM3); similar to male sterility protein, putative [Arabidopsis thaliana] (TAIR:AT3G56700.1); similar to male sterility protein 2 [Brassica napus] (GB:CAA68190.1); similar to male sterility protein 2-1 mutant [Brassica napus] (GB:AAQ81302.2); similar to male sterility protein 2-2 [Brassica napus] (GB:AAZ06658.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) -0.053206167419034 -0.572464893890285 0.578643164386112 1 -0.446796573532490 2.75038992909458 -0.053206167419034 0.0750790957911895
AT2G05400_at 2.17507715165881 2.43005102116228 2.64464484753896 1.86588425634315 1.82963974618155 2.08392045479689 1.88379854661139 2.26121144669636 2.34443654127614 1.98054463919206 2.05009453031980 1.83178618004816 1.92685301133666 2.46862918946827 2.24087884346068 1.92074774280955 2.61999962721132 1.97868882909179 2.25705716242885 0.191070461151336 0.187718567578109 0.195175796140651 0.198069711788576 0.185730926320251 0.194504041841429 0.190299492891287 0.191760229422087 0.197965395251497 0.191434422410773 0.188942408039867 0.187845899493207 0.194833243761364 0.190613287354827 0.185730926320251 0.191264692725183 0.193396696459417 0.194592728120523 0.190606253478648 2 2 + 1975558 1976302 1975875.545 1974883 1976567 + gene protein_coding_gene FALSE TRUE AT2G05400.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease-related / meprin and TRAF homology (MATH) domain-containing protein-related [Arabidopsis thaliana] (TAIR:AT2G05410.1); similar to MATH domain containing protein [Brassica oleracea] (GB:ABD65138.1); contains InterPro domain TRAF-like; (InterPro:IPR008974) -0.0729076260322355 -0.572137340346449 0.578857328037849 1 -0.446980485943287 4.30863969646565 -0.0729076260322355 0.162208532252351
AT4G32920_at 2.3775897497883 2.71634997091749 2.95717257131224 2.33144011626448 2.78173373891808 2.99680693679339 3.96269450576511 4.36405978044717 1.40146533333277 2.8714342824879 2.08587155997722 2.38868103084603 2.38553511891002 2.46395538584476 2.03430275805691 2.9516612969713 3.06313954657066 2.20707697273520 1.71679163759303 0.203010791981757 0.188958475999052 0.194917281385451 0.187239184452105 0.202099210352858 0.195777412207164 0.204635681705458 0.203542204583470 0.197977059635646 0.19144121852039 0.200827262036574 0.192477084249273 0.193893241542596 0.200448568653287 0.196570596733595 0.191273127185111 0.198215822833662 0.191363149246506 0.198437229104320 4 4 - 15888162 15888962 15888584.909 15887578 15896009 - gene protein_coding_gene FALSE TRUE AT4G32920.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G47020.1); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G11700.1); similar to hypothetical protein MtrDRAFT_AC144766g15v1 [Medicago truncatula] (GB:ABE91983.1); similar to Thiolase [Medicago truncatula] (GB:ABE80802.1); similar to hypothetical protein MtrDRAFT_AC146940g33v1 [Medicago truncatula] (GB:ABE90405.1); contains domain no description (G3D.2.10.50.10); contains domain "Winged helix" DNA-binding domain (SSF46785); contains domain TNF receptor-like (SSF57586) -0.0687104766531791 -0.5721353900594 0.578858603317407 1 -0.446981580681005 5.28302677621424 -0.0687104766531791 0.146192802242555
AT4G02300_at 1.16292951296625 1.20451854145945 1.22987238778620 1.32399860640076 0.818710665469392 1.38863227937848 0.867863814359834 1.29765463957211 1.00980530063185 0.897557550302603 0.915026212561827 0.90145763141227 1.06793719734124 1.12679756065980 1.48944687894421 1.35311991131011 1.23317238033743 0.853307908390776 1.23583317076965 0.207343095518711 0.190307064075427 0.194128807640789 0.190573550971059 0.192226052389282 0.190307064075427 0.196866016316228 0.195189409008042 0.192891797821354 0.198987853180624 0.196172812384826 0.192199941094183 0.194835920275204 0.195282366746473 0.190307064075427 0.193310994992706 0.195395863716135 0.200138386081277 0.195691982703052 4 4 - 1009369 1009936 1009652.273 1009366 1013034 - gene protein_coding_gene FALSE TRUE AT4G02300.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G02320.1); similar to pectinesterase [Citrus sinensis] (GB:AAB57670.1); similar to Os01g0312500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042866.1); similar to Os07g0675100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060620.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.0634315302771497 0.572125161109751 0.578865291983355 1 -0.446987322351333 2.24440516460126 0.0634315302771497 0.124805913960242
AT1G63200_at 0.48069994335808 1.15171155136744 0.652713207334655 0.864933980652908 1.17363292689294 0.996345439113944 0.61223341387026 0.755093798458055 1.07749372815242 0.989496369390137 0.743190338281431 1.17660210001895 0.85710794204759 1.15409840936452 1.18593081868431 0.778357933492896 0.567761784851983 1.38949453832330 1.00907166251735 0.21806335968731 0.210029647836712 0.21096726372905 0.211013357511570 0.213817700191049 0.209334295009718 0.215117413419168 0.212082640076541 0.210501657092105 0.209504798069745 0.209334295009718 0.214483498646271 0.212615188078243 0.209334295009718 0.210612190314794 0.209334295009718 0.220510219005791 0.212175900753634 0.211996531327122 1 1 - 23437305 23438094 23437770.545 23437295 23438265 - gene protein_coding_gene FALSE TRUE AT1G63200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63190.1); contains InterPro domain Arabidopsis thaliana cystatin-related protein; (InterPro:IPR006525) 0.0640928874241541 0.571221464551192 0.579456378967986 1 -0.447494201680965 1.83938148420758 0.0640928874241541 0.128005971555292
AT1G29480_at 0.927821175572678 0.977665545740355 0.761058855374998 1.05594901411239 0.505726351000643 0.929294736661113 0.743736413634662 0.860868401734751 1.11893306982330 0.499196027965239 0.718020554878428 0.75208792219861 0.410472683055469 0.648475536792571 1.01062667596855 0.94832881772705 0.66135363377267 0.637920250362217 0.695549035698075 0.197907928341132 0.198681363104165 0.193079594475470 0.193079594475470 0.196441232995085 0.201032045619188 0.203283510521603 0.219738648288620 0.198461307952689 0.197859986296762 0.201735829623141 0.193079594475470 0.198373648399711 0.193079594475470 0.203359831137409 0.198042541616521 0.200233655767432 0.193079594475470 0.196258160337700 1 0|1 /|+ 10318193 10318658 10318382.222 10317922 10318697 + gene protein_coding_gene FALSE TRUE AT1G29480.1 unknown protein -0.0561654650172079 -0.570951339947694 0.579633124039116 1 -0.447645567539249 1.59258346364894 -0.0561654650172079 0.091991983199682
AT1G36550_at 0.923312765209764 1.04309686539465 0.664599546502877 1.26046670394946 1.06973339517201 1.55196312413197 1.05636126691294 1.23301431895969 1.75083604927433 1.21336406117952 1.23644080868205 0.947720855070538 1.61720674677185 1.16472776413828 1.22820378065395 1.06794895221419 0.740728492381905 1.32473520769225 1.1504581977603 0.236152246261784 0.230532927660538 0.246069138969074 0.230532927660538 0.230532927660538 0.23317448244691 0.230532927660538 0.230532927660538 0.234146181196097 0.230532927660538 0.239459477125001 0.230532927660538 0.230532927660538 0.242725937720654 0.236438071687012 0.230532927660538 0.230532927660538 0.253484981684627 0.248707406228369 1 0 / Inf -Inf NA 13796743 13798497 + gene protein_coding_gene FALSE FALSE AT1G36550.1 similar to retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] (GB:ABA98367.2); contains InterPro domain Retrotransposon gag protein; (InterPro:IPR005162) -0.0664221525671382 -0.570897378870744 0.579668434743354 1 -0.447675796892344 2.36907692095684 -0.0664221525671382 0.137701686278504
AT4G12300_at 8.06213504938988 8.3267717613477 8.06337250050076 8.16217170609721 8.50774160989495 8.63806862864962 7.94877702984396 8.04462042614668 6.93252696834055 7.18852193712746 6.81069812720789 6.43099801507093 6.86980966912713 6.94117792476794 5.7010717251419 7.27214360523542 7.26931310981502 6.4866640885567 7.09010480517586 0.221809678990454 0.213017073728687 0.218514188494069 0.216058918958371 0.222035330306768 0.218014265828318 0.215031724829109 0.225907506227992 0.234812868958521 0.22238822427295 0.216414521161646 0.223247576514532 0.224816109171377 0.215276352060798 0.235377607497566 0.213017073728687 0.213017073728687 0.222197502188999 0.213017073728687 4 4 - 7308029 7308551 7308269.273 7307732 7309750 - gene protein_coding_gene FALSE TRUE AT4G12300.1 CYP706A4 (cytochrome P450, family 706, subfamily A, polypeptide 4); oxygen binding member of CYP706A similar to CYP706A6 (cytochrome P450, family 706, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G12320.1); similar to CYP706A5 (cytochrome P450, family 706, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G12310.1); similar to putative cytochrome P450 [Matthiola incana] (GB:AAG34695.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0501937462478357 -0.570800959904818 0.579731531640555 1 -0.447729804767220 15.1157668906488 -0.0501937462478357 0.0563332034848545
AT4G17460_at 5.11532401316714 5.40906977425504 6.56634559099261 6.50864943526364 7.5609800450071 7.77319893828427 7.17182611005455 7.27317055006475 8.69318044558315 8.14407904743194 8.72928926476177 7.71233221221238 8.73229402739655 8.33843561510926 7.87225852929486 8.14658319004488 7.78459598528861 7.61512741090174 9.78238847606193 0.191703273312638 0.195336802799674 0.184789131031653 0.193007656597469 0.183778053183859 0.190534023558795 0.185892740737552 0.200144431905209 0.208081084131312 0.186505678883367 0.181556628268401 0.183394351159971 0.188844032855994 0.186947132965454 0.185369822483226 0.184604331133972 0.200990856258082 0.190103087712494 0.198547462583415 4 4 + 9740276 9740970 9740734.727 9739675 9741158 + gene protein_coding_gene FALSE TRUE AT4G17460.1 HAT1 (homeobox-leucine zipper protein 1); DNA binding / transcription factor Encodes homeobox protein HAT1. Identical to Homeobox-leucine zipper protein HAT1 (Homeodomain-leucine zipper protein HAT1) (HD-ZIP protein 1) (HAT1) [Arabidopsis Thaliana] (GB:P46600;GB:Q546G7;GB:Q8LBA8); similar to HAT2, transcription factor [Arabidopsis thaliana] (TAIR:AT5G47370.1); similar to homeobox-leucine zipper protein hat1, putative [Brassica oleracea] (GB:ABD65141.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain HD-ZIP protein, N-terminal; (InterPro:IPR006712) 0.0515472150927248 0.570582378942938 0.579874585393708 1 -0.447852208481759 15.1671108166704 0.0515472150927248 0.0658797473457297
AT2G43670_at 1.68889506971492 1.60102604679289 1.51189404592915 1.87930601811440 1.53618477416560 1.35844390251911 1.76382671083022 1.47179950081008 1.58209361095936 1.60362380873722 1.90996446435688 1.77536337059072 1.31499219301972 1.89148645401184 1.70332551714394 1.43934964528248 1.9006672957371 1.46574748944746 1.32761273391638 0.220028196719699 0.218401578860809 0.218834621084520 0.216739033009250 0.212048068717494 0.218025024441003 0.217058940520176 0.212941691159046 0.216590642814738 0.214920739050916 0.216261372326297 0.222438436322538 0.223286808893845 0.214384299159158 0.218369955767084 0.211076882113554 0.216466856542403 0.218215327938245 0.221655945926206 2 2|0 +|/ 18112236 18112796 18112605.667 18112202 18113105 + gene protein_coding_gene FALSE TRUE AT2G43670.1 glycosyl hydrolase family protein 17 similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT1G78520.1); similar to Os01g0243700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042566.1); similar to putative beta-1,3-glucanase [Sorghum bicolor] (GB:AAL73529.1); contains InterPro domain X8; (InterPro:IPR012946) 0.0553695111530759 0.570368576081873 0.580014530344235 1 -0.447971893970389 3.19119972772776 0.0553695111530759 0.0881703290691069
AT4G04180_at 2.40435754463004 2.58741725146371 2.70133662395308 2.86902785879605 2.51787850654504 2.48765933803629 2.90345647783994 2.30380333885621 2.19186442198494 2.44044605062536 2.50823870114050 2.32980922610634 2.36581003783609 1.99744589468941 2.42817818584267 2.487192371937 2.55644670667441 2.33314784695106 2.41542797406368 0.192760838476977 0.188636983212518 0.196389371809667 0.192058073382432 0.192424312316010 0.189150498880715 0.190971817303906 0.20190780231894 0.204767078516886 0.188636983212518 0.192419859645811 0.191192959724822 0.192127939610597 0.191696386623050 0.192245607694284 0.190912970841867 0.198281530515891 0.197030507997962 0.208565266150330 4 4|0 +|/ 2022627 2023637 2023251.778 2020434 2023990 + gene protein_coding_gene FALSE TRUE AT4G04180.1 AAA-type ATPase family protein similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to Os02g0740300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048071.1); similar to ATPase, AAA family protein [Tetrahymena thermophila SB210] (GB:XP_001024882.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0603772005705001 0.570171023162942 0.580143854957133 1 -0.448082445459653 4.9593820026593 0.0603772005705001 0.112436039168494
AT3G09620_at 1.47747301637797 1.42885741209303 1.55285808617464 1.70087582495469 0.761939837869876 1.69304025050829 1.15952100717969 1.36879929655823 1.25841164862331 1.64014604207806 1.29150871839886 1.60773247232623 1.78388234260127 1.43813917747901 1.32227553358115 1.55801202734362 0.963175455262649 1.32834129191032 1.09773578204875 0.192478197116331 0.189206148499887 0.190863406629526 0.191629933435176 0.189206148499887 0.192010444406540 0.191634752003862 0.190981840485 0.199030023883959 0.189206148499887 0.194740828722329 0.192984271111075 0.212346400367718 0.193265016126291 0.195058847138142 0.190650789567256 0.208427044613739 0.193381511761459 0.193489880499356 3 3 - 2949181 2949603 2949434.545 2949157 2952210 - gene protein_coding_gene FALSE TRUE AT3G09620.1 DEAD/DEAH box helicase, putative Identical to Probable DEAD-box ATP-dependent RNA helicase 45 (EC 3.6.1.-) (RH45) [Arabidopsis Thaliana] (GB:Q9SF41); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to DEAD-box protein abstrakt (ISS) [Ostreococcus tauri] (GB:CAL55237.1); similar to DEAD box polypeptide 46 [Mus musculus] (GB:NP_666087.2); similar to RNA helicase [Rattus norve (GB:NP_620798.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.0740256849687465 0.570106393333963 0.580186167113727 1 -0.448118604802838 2.76478619227102 0.0740256849687465 0.167337516427107
AT1G19100_at 3.50251212189609 3.61010981459981 3.48213879710239 3.40809603963585 3.51750003530992 3.60764791876226 3.62722159416185 3.66547555735402 3.58856197101997 3.35578750293495 3.27289556767105 3.47584756018642 3.49099438945545 3.6920224144716 3.66632514773295 3.78616576582058 3.46825117167462 3.88021765009945 3.82125792425712 0.168752453685118 0.177050269055781 0.181428545863299 0.177438018743537 0.170856633808392 0.177133769914232 0.177956269306246 0.175265456434835 0.169423004067969 0.173438464719307 0.174216470908382 0.173060761801954 0.182623237241003 0.178728952026649 0.173685951828949 0.175373342654326 0.173478977241636 0.172764331303609 0.177570141612423 1 0|1 /|+ 6599649 6600700 6600011.667 6594921 6601346 + gene protein_coding_gene FALSE TRUE AT1G19100.1 ATP-binding region, ATPase-like domain-containing protein-related similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36280.1); similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36290.1); similar to ATP-binding re (GB:ABE93582.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -0.047214957657668 -0.570077483881735 0.580205094223242 1 -0.448134777929294 7.14265061374929 -0.047214957657668 0.0282506637086228
AT1G34220_at 8.25673804060297 8.39235209901566 8.39831136095404 8.5267126317437 8.49495266582817 8.41221776769843 8.35380535057267 8.36498998642308 8.13290629898498 7.95418438091302 7.98587899819017 8.02911589355421 7.97083525896 7.8119904840303 7.88457686340844 7.8966909822697 7.98588650625948 8.04883324553609 7.82965842043373 0.155147002552281 0.154721754298765 0.156016960272968 0.154421099468566 0.153323145495189 0.151793601452750 0.152992140054398 0.148757549241192 0.168671150139987 0.157312873141029 0.148189473355173 0.1471455443459 0.148517804947004 0.157436779131901 0.154780536123227 0.149733992625696 0.168900494979346 0.162839939341796 0.147177956841018 1 1 - 12463102 12463653 12463345.273 12462827 12466067 - gene protein_coding_gene FALSE TRUE AT1G34220.1|AT1G34220.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35730.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAE46414.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.0477767831589824 0.569951479517371 0.58028759353986 1 -0.44820526092817 16.3619978524232 0.0477767831589824 0.0354015107600805
AT4G30520_at 3.94275226786118 4.78503703756669 4.92933302561915 5.07312397882219 5.77627785301672 5.22677952266199 6.67560260151715 6.5725532054051 4.45759597549813 5.40654684169391 4.63717624555570 5.29108495961821 5.59691326745003 5.27077763838077 4.78271738406341 5.83386228965771 5.75994831515651 5.00225222125525 5.68233564880275 0.266128218610569 0.265480499294515 0.269095119470761 0.265480499294515 0.269847723731843 0.283188764219764 0.267057173893365 0.273134425093556 0.268750667177238 0.265774996718155 0.267088608692810 0.265480499294515 0.271806671754897 0.265480499294515 0.267830233493127 0.265480499294515 0.278154258782452 0.265480499294515 0.265480499294515 4 4 - 14908206 14908864 14908496.455 14908006 14911313 - gene protein_coding_gene FALSE TRUE AT4G30520.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.1); similar to Leucine-rich repeat, typical subtype [Medicago truncatula] (GB:ABE94689.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.076462815790128 -0.56920650738071 0.58077548031607 1 -0.448621677064426 10.5996829509623 -0.076462815790128 0.176709663912674
AT1G08730_at 2.13230229405518 1.94202808826675 1.99035926507634 2.50083049409080 2.12804766458634 1.48810331591309 2.21872271129748 2.29773811476147 2.47450988821672 2.35970802370107 2.16409010772432 2.38205687504197 2.53189709815709 2.39798348980861 2.33111276403705 2.30038248714666 2.08551191284862 2.47623581372260 2.21397530517215 0.207865249260971 0.206640345674575 0.211936591798205 0.214920671497078 0.215818276972076 0.209907784756326 0.213565153309104 0.210450854749846 0.210803523035928 0.216255749533115 0.208979867531287 0.210281914079818 0.222456933732961 0.208944205873370 0.212168551312889 0.209656674592000 0.218115099122637 0.207894615951100 0.209650127838956 1 0|1 /|+ 2787368 2788297 2787889.667 2779966 2788450 + gene protein_coding_gene FALSE TRUE AT1G08730.1 XIC (Myosin-like protein XIC); motor/ protein binding Class XI myosin gene similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to MYA1 (ARABIDOPSIS MYOSIN), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G17580.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to unconventional myosin heavy chain [Zea mays] (GB:AAD17931.2); similar to unconventional myosin [Helianthus annuus] (GB:AAB71529.1); similar to myosin XI [Nicotiana tabacum] (GB:BAD72949.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.068300768823849 -0.568961203328676 0.580936179457394 1 -0.448758682572297 4.42879477230136 -0.068300768823849 0.146080827662618
AT2G17350_at 7.97637294267414 7.82668365033491 8.3335714949974 8.22935344492808 8.55039635834979 8.37670357089087 8.16177734575952 8.279533730972 7.87049489763015 8.3559798287908 7.94967549959732 7.4789026474131 7.86334188179301 7.86057481054582 7.02282449045232 8.13437109575363 7.85836821013335 7.46595433918606 8.114524511479 0.169657336998041 0.163996059857142 0.171358360488198 0.168502629749717 0.163163991695432 0.173487033595724 0.164675433781281 0.168938060673559 0.183720271840452 0.171720522579109 0.182762684750407 0.164574943594193 0.169519935909365 0.164555575877933 0.181321467427273 0.171882275682591 0.168364994859686 0.173503442088466 0.171924868593160 2 2|0 -|/ 7552798 7553185 7552991.444 7552620 7553456 - gene protein_coding_gene FALSE TRUE AT2G17350.1 similar to Os08g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062215.1) -0.0490002454587948 -0.56895756979857 0.580938559968507 1 -0.448760711529884 16.1257580846097 -0.0490002454587948 0.0481154326004071
AT3G57860_at 2.94785487502097 2.37119946074877 2.92286263330632 2.69472246103437 2.74658325120557 2.77700252148084 3.42550416948091 2.74783305828484 3.08436022485059 3.13870961255553 2.94035107040437 2.79351026576795 3.03756773338595 2.84875451209695 2.95280649562668 3.02916700234911 3.16528100301218 3.07056100054164 2.88271232347730 0.20499651637791 0.193836279812625 0.188766960566771 0.203804449070546 0.188634345917859 0.188634345917859 0.202638573111168 0.194397792465634 0.191876925238416 0.195902919430196 0.196117444205092 0.189154958415358 0.189686298692038 0.198142416467361 0.196946932642655 0.189287216912149 0.190195314971887 0.191066847590964 0.189378326894398 3 3 + 21437862 21438561 21438160.545 21437291 21439230 + gene protein_coding_gene FALSE TRUE AT3G57860.1 (UV-B-INSENSITIVE 4-LIKE); unknown protein Plant specific-protein of unknown function, shares 62% homology with UVI4 at aa level. similar to UVI4 (POLYCHOME, UV-B-INSENSITIVE 4) [Arabidopsis thaliana] (TAIR:AT2G42260.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94652.1) -0.071658004511735 -0.568893997944916 0.58098020998033 1 -0.44879620798819 5.83670060666661 -0.071658004511735 0.159054359055147
AT3G04370_at 1.34525089316232 1.61206920170285 1.64670389898436 1.30201548409509 1.54854986490024 1.64143344048246 1.20225188898595 1.53951546021874 1.7028387498659 1.09145508239135 1.56920543336809 1.42547903499282 1.03234401076513 1.45241326032067 1.68406654209629 1.61740347042169 1.19279746903105 1.34507342120332 1.43866140768229 0.256875222282014 0.249056173550999 0.239618745898837 0.255506997201256 0.242062772994122 0.255402317825196 0.246156451598954 0.244815246515979 0.238083593037521 0.242574619161254 0.25752945761336 0.241358841426045 0.236397921441237 0.241209113046881 0.240559603230358 0.246535979886959 0.245481565438110 0.239718043412427 0.241579335366295 3 0|3 /|+ 1160273 1160679 1160445.6 1159429 1161132 + gene protein_coding_gene FALSE TRUE AT3G04370.1|AT3G04370.2 similar to 33 kDa secretory protein-related [Arabidopsis thaliana] (TAIR:AT1G04520.1); similar to Domain of unknown function, putative [Medicago truncatula] (GB:ABE87977.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 0.0568832806965567 0.568688295636186 0.581114989743858 1 -0.448911039981699 2.89264022169387 0.0568832806965567 0.0967213319470497
AT1G73350_at 6.11161142902006 5.77557908722588 6.22789395252745 6.00992627536674 6.59933439469143 6.03263165429562 5.7311098013366 5.4536449562666 5.28630528188305 5.4062890715245 4.54521829190923 5.37023875275979 4.83066656283109 4.91316275984284 4.86990605665357 5.14037964971907 5.09566540108776 4.9002969959186 5.14567216019461 0.220740364529652 0.221604108510930 0.219484302193681 0.219613430169619 0.23166616154763 0.224134092943015 0.215550682585819 0.228502202441881 0.225023052836036 0.217803492666775 0.220608886435894 0.218818581879274 0.222247580241795 0.226294548251387 0.217280387600646 0.217233811848918 0.218413521775146 0.219424254669315 0.221113357323383 1 1 - 27579378 27580742 27579900.8 27579154 27580910 - gene protein_coding_gene FALSE TRUE AT1G73350.1|AT1G73350.2 similar to Os02g0637900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047530.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81144.1) 0.064114944198776 0.568583034004399 0.581183965479939 1 -0.44896978654549 11.1115234338618 0.064114944198776 0.129336380722100
AT3G13900_at 1.28430771772284 1.27436540898434 1.60410997262346 1.19803810440114 1.42515023918691 1.68454910264605 1.58135974680259 1.29217659842535 1.82204220319539 1.74855532936641 1.92123831775686 1.59591613041850 1.59226442363003 1.04823237538600 1.66694193810450 1.71108042852114 1.37014320300676 2.03428665392368 1.29988292299855 0.236418788687138 0.236418788687138 0.236418788687138 0.240503080284429 0.240671266082885 0.237584288755502 0.238761607009671 0.236418788687138 0.241881732005174 0.236418788687138 0.240740137103719 0.239515885748141 0.243426864828269 0.242478711607713 0.241163338642769 0.240859819600417 0.249315323631173 0.241976208656163 0.236418788687138 3 3 + 4590109 4590650 4590408.545 4586158 4590688 + gene protein_coding_gene FALSE TRUE AT3G13900.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 7 (EC 3.6.3.1) (Aminophospholipid flippase 7) (ALA7) [Arabidopsis Thaliana] (GB:Q9LVK9); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G17500.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G72700.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G54280.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE81304.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to Putative phospholipid-transporting ATPase 7 (Aminophospholipid flippase 7) (GB:Q9LVK9); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.05696446769363 0.568396606512755 0.58130613824106 1 -0.449073806780477 3.03851032086419 0.05696446769363 0.0972665550168332
AT1G64330_at 3.77603527132942 4.51561081222174 3.93607445535857 3.90089859518922 3.5206650083499 3.58929970458818 3.66207751234464 4.11725760583703 4.62366381153508 4.78057688940667 5.76542300950394 5.33244262097335 4.80975273743141 5.24758716474002 4.99729763883152 4.74921641067601 3.89771404472598 4.96170662274903 5.07971875320949 0.192431269121564 0.191943312654485 0.191040937688679 0.195083665910404 0.198625093222383 0.196054419256523 0.191926936183664 0.19547517341084 0.203883652552417 0.193411184884991 0.190962463205959 0.196300120965743 0.194273100658459 0.192711703356475 0.191747476348801 0.192284745717679 0.203912746652669 0.196721879183612 0.196270415026650 1 1 + 23877066 23877579 23877310 23874568 23877861 + gene protein_coding_gene FALSE TRUE AT1G64330.1 myosin heavy chain-related similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to putative myosin heavy chain-like protein [Trifolium pratense] (GB:BAE71306.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.069427406537458 -0.568119312472101 0.58148788457506 1 -0.449228468281917 8.77630437861283 -0.069427406537458 0.150876372628555
AT1G75370_at 9.26178687989223 9.12277375423021 9.4715371729421 9.22022336357063 10.1661766631840 9.46855529874394 10.1935213701713 9.56896990478684 9.3875740596469 9.67216976264696 9.90626228960142 9.59095728491014 9.5182486020417 9.74367796172426 9.19044973341452 9.5559360316373 9.62081400703648 9.57233898264003 9.39075869054364 0.128470352016563 0.123604229037603 0.130368120171412 0.131844180031058 0.123395402626843 0.127712014212536 0.121935577502699 0.124379056821863 0.134952816699102 0.124225156158218 0.123295218242913 0.123470356429646 0.120416977415977 0.133452492982406 0.125353303095653 0.127887150145997 0.130770750323901 0.126573981018339 0.128252945494483 1 1 - 28280250 28280978 28280730.909 28280087 28283559 - gene protein_coding_gene FALSE TRUE AT1G75370.1 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to putative phosphatidylinositol/ phophatidylcholine transfer protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07999.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.0743474606766354 0.568112474610546 0.581492366686007 1 -0.449232281223268 19.0946112755593 0.0743474606766354 0.169489651237584
AT2G17270_at 2.77053726389905 2.65355842169501 2.63524846456440 2.36152685841776 3.14830063174371 2.67792000188245 2.87786164559751 2.63979812340039 2.70348092357968 2.57495954428847 2.73758846289611 2.53152338695674 2.52213262686546 2.14404889961533 2.19927775691600 2.50680988317694 2.58418599032188 2.39206584129579 2.33999363310714 0.184831764926291 0.186938994016965 0.196898321595998 0.184845232788628 0.189105392827875 0.192079660791341 0.188710177592746 0.19321032287924 0.192533805990790 0.192327745876743 0.190401596332019 0.185047951891467 0.188075410693482 0.187905737812161 0.186199300219446 0.18700509825638 0.189615017365902 0.189015386391467 0.194125381304739 2 2|0 +|/ 7518085 7518973 7518550.375 7517182 7519469 + gene protein_coding_gene FALSE TRUE AT2G17270.1 mitochondrial substrate carrier family protein similar to mitochondrial phosphate transporter [Arabidopsis thaliana] (TAIR:AT5G14040.1); similar to Mitochondrial substrate carrier [Medicago truncatula] (GB:ABE78083.1); similar to Os09g0554000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063885.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.0584819010744039 -0.567989568114666 0.581572933113869 1 -0.44930080923541 5.21643499623202 -0.0584819010744039 0.10477166473159
AT2G27700_at 1.96519162865548 1.97644337398028 1.74306286069044 1.79657421440788 2.12598688845378 1.58877057528297 1.50230513547351 2.05438533003326 1.58576598758665 1.94839560594822 1.97624176316872 1.92803701540626 1.78734011663067 1.9883784067826 1.53578678776361 1.65132910321001 1.99924348422585 1.50425939304089 2.0622441353053 0.159210177049346 0.153318456072228 0.155537455055452 0.161636527361145 0.158397575318007 0.157409259679705 0.153318456072228 0.156201708181503 0.16064328410246 0.162388164545171 0.160470252078327 0.158949947609626 0.158656921233444 0.158234247377901 0.160157481041523 0.157168114241451 0.164014136356097 0.163704648962566 0.157732266486406 2 2|0 -|/ 11821034 11821583 11821261.7 11821026 11823079 - gene protein_coding_gene FALSE TRUE AT2G27700.1 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76810.1); similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76825.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor [Pisum sativum] (GB:AAN32916.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.0650621499141704 -0.567762819312343 0.581721584856202 1 -0.44942719928586 3.67498779340151 -0.0650621499141704 0.133643022967809
AT3G16380_at 2.07004559023021 2.01360873217963 1.86446963276643 2.1289373625484 2.06951882773225 2.23654014483629 2.26079333479553 2.06659105897238 2.29189965369283 1.93555076961040 2.48050922632323 2.39251162870436 2.33524047993646 2.33904779124569 2.50920175653226 2.09284338577413 1.98473349032570 2.6429579465355 2.42388821595959 0.22872755740158 0.227422686860602 0.236779505171003 0.230424973373844 0.236324974067026 0.227422686860602 0.227422686860602 0.230234732528817 0.233294507506678 0.228263799349484 0.229360158558266 0.239275490859621 0.234948848970381 0.233413176770955 0.242640984378257 0.231293860854734 0.235677515539173 0.234292519965081 0.232562677438608 3 3|0 -|/ 5558785 5559549 5559190 5558682 5560999 - gene protein_coding_gene FALSE TRUE AT3G16380.1 PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, similar to polyadenylate-binding protein (poly(A)-binding protein) from {Arabidopsis thaliana} SP:P42731, (Cucumis sativus) GI:7528270, {Homo sapiens} SP:Q13310, {Arabidopsis thaliana} SP:Q05196; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM). Member of the class III family of PABP proteins. similar to PAB4 (POLY(A) BINDING PROTEIN 4), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT2G23350.1); similar to Polyadenylate-binding protein 1-B (Poly(A)-binding protein 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) (GB:Q6IP09); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0510623231721488 0.567587308621299 0.581836659906432 1 -0.44952499664532 4.37093488197086 0.0510623231721488 0.0644588420134019
AT3G59060_at 10.3007752427614 10.3601365261612 10.73528272991 10.7224374931056 10.9996022474857 10.9589625983854 11.0176038220406 11.0460669302001 11.2188001787037 11.1035995769455 11.2219846309238 11.1788619827985 11.1707559467785 11.1851695448583 10.7557730694603 11.2289180023940 11.0582916421872 10.9582093704594 11.2033257412343 0.0800913968461881 0.0780620032046277 0.0804583337877942 0.081764998090883 0.0767532522756541 0.0786821134273714 0.074846867952631 0.0789224325182357 0.0850579175065724 0.0788810538239284 0.074846867952631 0.0762262474363676 0.0771052211276334 0.0759370478938215 0.0781395079171679 0.075614893610411 0.0822495216912757 0.0773371084146744 0.0774702638576438 3 3|0 -|/ 21839179 21839993 21839509.1 21838955 21841484 - gene protein_coding_gene FALSE TRUE AT3G59060.1|AT3G59060.2|AT3G59060.3|AT3G59060.4 PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription factor encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. similar to PIF4 (PHYTOCHROME INTERACTING FACTOR 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G43010.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99197.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0462146641844186 0.567411847762285 0.581951714436436 1 -0.449622737881262 21.9026021267698 0.0462146641844186 0.0135718242070678
AT1G14450_at 9.38514854075545 9.45249899423007 9.40187681869403 9.4168477912456 9.66432344284729 9.18775994549182 9.52197413381696 9.59453154984047 9.2773152096554 9.29119666074822 9.47379703027877 9.56063121583997 9.3859437470016 9.55112494794548 9.42104718865065 9.45327439947427 9.11463887621954 9.42730959330045 9.16332459216418 0.0975557785502903 0.0963242962016643 0.0964000879501307 0.0954761585914872 0.095686765067848 0.0941898522125152 0.0993290335344013 0.0977618218697112 0.0972923309940528 0.0984027205202607 0.0983967056249622 0.0968118479980857 0.101033829314986 0.100256731198129 0.0963527830018472 0.0968712543187886 0.103182874569745 0.102173435970165 0.0944620391826505 1 1 - 4947344 4947528 4947429.636 4946213 4947571 - gene protein_coding_gene FALSE TRUE AT1G14450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15588.1) 0.0543445411125971 0.567297624049942 0.582026620607201 1 -0.449686351460777 18.7868283332959 0.0543445411125971 0.084272034877998
AT4G08820_at 2.68929568441705 2.17505229421962 2.44640687555416 2.31510348120604 2.18108055224244 2.61166225952594 2.28766243507238 2.41584979750814 2.38716343399359 2.18484007134178 2.18890314044044 2.14029335871483 2.70743711248554 2.31388724853159 2.28952386865468 2.3013821086218 2.85544878030039 2.48214800473526 2.27628814395532 0.175367043311886 0.179590271220848 0.188575233283042 0.184011874425167 0.178197529950729 0.182303375403623 0.177358139161888 0.179773519755524 0.181796341991374 0.173602659756151 0.177836591131331 0.177093003284195 0.179559114803323 0.178556197300841 0.18051193198969 0.179366867884684 0.174060052123366 0.18105444314992 0.18016439715753 4 4 + 5622630 5623173 5622962.636 5621761 5623206 + gene protein_coding_gene FALSE TRUE AT4G08820.1 similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1); similar to Zinc finger, CCHC-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE79649.1) 0.0618561545207575 0.567291443007462 0.58203067418754 1 -0.449689793470166 4.73658509042195 0.0618561545207575 0.120334534790015
AT4G08710_at 2.57791690034017 2.30634065619618 2.55567047745879 2.68212811927164 2.02079892124429 2.70435255546388 2.39356600724275 2.4823445911686 2.86059411207302 2.62098143227954 2.72591514853145 2.20906134470126 2.63373317365929 2.52033846964386 2.35717578946453 2.35376240995038 2.83089804993570 2.18811173594922 2.48744088573889 0.165429308974187 0.160823495911753 0.158884166339109 0.163851638846564 0.172464114822469 0.162002574322460 0.161617544250698 0.162060201822223 0.162833491495628 0.156725045108887 0.158910329005214 0.164926220491586 0.169198457483407 0.165522001352901 0.164258128869952 0.161143117509501 0.158604566234191 0.160590189331031 0.156725045108887 4 4 + 5569972 5570541 5570240.091 5567739 5570569 + gene protein_coding_gene FALSE TRUE AT4G08710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23480.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078517.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) -0.0641344075891476 -0.567209319829369 0.582084532698251 1 -0.449735521696273 5.03224644117826 -0.0641344075891476 0.130064413056686
AT3G22920_at 1.70126237539240 1.61159764155169 1.89394413943255 2.16994456134258 1.59108765389600 1.78547271735221 1.69296078414067 1.69518108543051 2.4093612747441 1.8667539295493 1.69908950845372 2.05844982448385 2.29549444824199 2.20338297721255 2.24955891598572 2.18683939251200 1.82376819315557 2.14204793867732 2.22282129557632 0.206700543446201 0.203426848067866 0.199209091612933 0.201079517349391 0.203539755698901 0.210817824418643 0.19940727030066 0.204781122563120 0.200699095598595 0.20327475341608 0.200004399334570 0.206410078055337 0.210563105796388 0.199209091612933 0.201152284911039 0.20200793600397 0.201556865644066 0.199209091612933 0.209224014110865 3 3 - 8122724 8123289 8123051.818 8122720 8123418 - gene protein_coding_gene FALSE TRUE AT3G22920.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to cyclophilin [Cucumis sativus] (GB:AAX94775.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.0504392647970588 0.567153072647612 0.582121422594552 1 -0.449766837940447 3.89200190304911 0.0504392647970588 0.060447000723693
AT3G18440_at 6.81686247540472 6.6366432543507 6.19406598670091 6.11669562319351 6.0298624926025 5.94385106100247 5.68226398468205 6.19627442993938 5.31202266127211 5.16735237382357 5.42370409622938 5.40137133279716 5.51374343476124 6.23567112167702 5.89556316036681 5.36934271923647 5.66298658291215 5.4731539904889 5.26094487156246 0.196492658107218 0.192369400042945 0.194798787465494 0.192369400042945 0.195669178808224 0.204291856012413 0.193944795816162 0.194970840582114 0.208258236265392 0.193075576252821 0.199799725206864 0.203200282673908 0.200680248248176 0.203485403540910 0.200529706312992 0.192369400042945 0.201069529015535 0.196634702003396 0.196015420752644 3 3 + 6330130 6330521 6330346.273 6328121 6330800 + gene protein_coding_gene FALSE TRUE AT3G18440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18420.1); similar to Putative expressed protein [Brassica oleracea] (GB:AAW81734.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.0566382536849506 0.566958516324866 0.582249032613252 1 -0.449875136865261 11.6364225919985 0.0566382536849506 0.0963636128343584
AT1G17230_at 3.2266381379136 3.52085324017775 3.36489990006047 3.94118192283033 3.52848894298266 3.12387556597173 4.37996286288219 4.13163705565153 3.34669168804267 3.43155695296464 3.59411003367087 3.75675787505466 3.64143203976967 4.18217353083392 3.09276235807238 4.33198050084706 3.91535937478409 4.59659077428384 3.51542697731269 0.232381031540752 0.225870278916277 0.229097494733733 0.234716018438906 0.224398937741516 0.238291608378681 0.224398937741516 0.224520167323846 0.232427195007999 0.229078235354133 0.230955031290595 0.228080990710144 0.22658319022571 0.227490258808299 0.226872983791691 0.225748180449455 0.224579597436263 0.224398937741516 0.228438263699333 1 1 + 5894173 5894777 5894476.364 5891317 5894848 + gene protein_coding_gene FALSE TRUE AT1G17230.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G48940.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63930.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); similar to receptor protein kinase [Pinus sylvestris] (GB:CAC20842.1); similar to putative LRR receptor-like kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC84715.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0662546818064618 0.566954336727072 0.582251774186578 1 -0.449877463037513 7.3122527120694 0.0662546818064618 0.138880134702474
AT2G47350_at 5.03086880248458 4.78903445327854 5.2545322450044 4.87656212954428 5.11525094427142 5.20895030772744 5.29536898089995 4.54836243169756 5.23732698586012 4.90395204102705 4.91373501448864 4.73533338538258 4.30607756868789 4.31033404817061 4.84164064435038 4.76600344113342 4.97787292141382 4.71971578480334 4.95825916962522 0.210339364136178 0.199637178907908 0.208781168642348 0.209496810916821 0.195952071635251 0.209360972440065 0.201487818867267 0.201641744945995 0.208689172433491 0.201861800649454 0.198658717792049 0.197900625217714 0.207221008161251 0.206157471268126 0.207314762234508 0.198041837299077 0.200774846663554 0.200267745438592 0.220793587692188 2 2 + 19442972 19444089 19443625.182 19440861 19444319 + gene protein_coding_gene FALSE TRUE AT2G47350.1|AT2G47350.2 PAPA-1-like family protein / zinc finger (HIT type) family protein similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT1G56460.1); similar to PAPA-1-like conserved re (GB:ABA98935.1); contains InterPro domain PAPA-1-like conserved region; (InterPro:IPR006880); contains InterPro domain Zinc finger, HIT-type; (InterPro:IPR007529)|similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT3G06660.1); similar to PAPA-1-like conserved re (GB:ABA98935.1); similar to PAPA-1-like conserved re (GB:ABG22046.1); contains InterPro domain PAPA-1-like conserved region; (InterPro:IPR006880) -0.0694625291184506 -0.566730840026863 0.582398385071288 1 -0.450001827604056 9.87962553680917 -0.0694625291184506 0.151671688185404
AT1G11120_at 2.40157226709600 2.57786407379579 2.41017231789126 2.32494274909504 2.14023342993476 2.11620929244446 2.02934802451487 2.55988007338932 2.15565058706270 1.85892472778215 2.64800053157976 2.50726231611463 2.12334155032638 2.11718011851251 2.40411255887165 1.86841984753719 2.72011105097796 2.09021799260362 2.14056230695967 0.222196034908748 0.220200195280389 0.214915295959288 0.231266909017377 0.213257279121653 0.220233839719998 0.216215939290740 0.221467784306063 0.221345407706705 0.211905586111366 0.215449285557913 0.215888339728231 0.219041645859027 0.213562627651938 0.226222276174020 0.211905586111366 0.217331431724565 0.215912195679224 0.216076917468225 1 1 + 3719064 3719598 3719404.364 3715229 3719681 + gene protein_coding_gene FALSE TRUE AT1G11120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61170.1); similar to CK25 [Nicotiana tabacum] (GB:ABE01833.1) 0.056920771428169 0.566572337532646 0.582502372552876 1 -0.450089998306775 4.50079942172867 0.056920771428169 0.0979532651581533
AT1G42970_at 12.6922798065845 12.7791680981337 12.8048512244797 12.8780819464902 12.6753202526272 12.6214685710049 13.5834940533807 13.7053403691108 13.3495051126121 13.6270146243094 13.8365728389295 13.9133226649554 13.7474569346194 13.834471357895 13.8643584154134 13.9718493681350 13.5593779187971 13.7498494182356 13.399431637167 0.0622962946103844 0.0614393817481129 0.0653875514976158 0.0617873385769579 0.0629030203875823 0.0640961371773726 0.0635248472483429 0.0616519042628561 0.0663763851829062 0.0614393817481129 0.0614393817481129 0.0614393817481129 0.0614393817481129 0.0646694206814797 0.0614726049537624 0.0614393817481129 0.0642325170129285 0.0633448782679051 0.0619819067174678 1 1 + 16131244 16131977 16131589.909 16129821 16132283 + gene protein_coding_gene FALSE TRUE AT1G42970.1 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) (GAPB) [Arabidopsis Thaliana] (GB:P25857;GB:Q9C7S2); similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to GAPA-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G12900.1); similar to Glyceraldehyde-3-phosphate dehydrogenase, type I [Medicago truncatula] (GB:ABE83250.1); similar to glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max] (GB:ABA86964.1); similar to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) (GB:P12859); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) -0.0470665882794452 -0.566466480470797 0.582571826877354 1 -0.450148870871897 26.6016544515525 -0.0470665882794452 0.0303012945112598
AT2G01180_at 6.97518595972483 6.7148074202765 6.70515974120717 6.9564915049297 5.95035170766163 6.07020756792136 5.29138942002661 5.71092534501724 6.85354112635161 5.78964116630509 6.4307966041348 6.25084374411298 5.9250516341983 6.48079953462179 6.11317916855437 5.81605912314474 5.40011221231525 5.91428648163885 5.88179131666512 0.217391413638247 0.22122300153619 0.210462202456379 0.227482687871263 0.208593436454525 0.227758236760101 0.210855450185956 0.229292463583671 0.226082090490593 0.213173930710198 0.205303371020471 0.205303371020471 0.205303371020471 0.210682839595641 0.212563910362249 0.209893065726924 0.258054407601363 0.222642197761886 0.205303371020471 2 2 - 107238 107754 107439 106899 108802 - gene protein_coding_gene FALSE TRUE AT2G01180.1|AT2G01180.2 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1); phosphatidate phosphatase Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. Identical to Lipid phosphate phosphatase 1 (EC 3.1.3.-) (AtLPP1) (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl diphosphate phosphatase) (LPP1) [Arabidopsis Thaliana] (GB:Q9ZU49;GB:Q8H0G3;GB:Q8LDP8;GB:Q945N3;GB:Q94LY6); similar to LPP3 (LIPID PHOSPHATE PHOSPHATASE 3), phosphatidate phosphatase [Arabidopsis thaliana] (TAIR:AT3G02600.1); similar to phosphatidic acid phosphatase alpha [Vigna unguiculata] (GB:AAF89579.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934)|Identical to Lipid phosphate phosphatase 1 (EC 3.1.3.-) (AtLPP1) (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl diphosphate phosphatase) (LPP1) [Arabidopsis Thaliana] (GB:Q9ZU49;GB:Q8H0G3;GB:Q8LDP8;GB:Q945N3;GB:Q94LY6); similar to LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) [Arabidopsis thaliana] (TAIR:AT3G02600.5); similar to phosphatidic acid phosphatase alpha [Vigna unguiculata] (GB:AAF89579.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) 0.0569377269507662 0.566445803552268 0.582585393813513 1 -0.450160369166251 12.4050059663193 0.0569377269507662 0.0980993235628659
AT1G64450_at 1.63486179448923 1.84139782830730 1.64742110388318 1.43038446487789 1.55399470068545 1.73287596461178 1.75850204918596 1.63010223914475 2.4500807381989 2.06240933044009 1.98392512192998 2.05002228034874 2.06586242143311 2.24311234450833 2.29891425755261 2.38760816342071 2.17862719894958 1.94041904688372 1.84859365641888 0.220362670151432 0.197700419228810 0.204654128044968 0.211360289993227 0.204113885451703 0.204408685191978 0.198929851163953 0.202763732546919 0.19894850307808 0.206704268383965 0.196600505664849 0.205626991541584 0.199862176467421 0.199605074665731 0.201050219080866 0.208952869612059 0.196511191672365 0.203808198980357 0.205119653606383 1 1 - 23945421 23945969 23945704.182 23945261 23946509 - gene protein_coding_gene FALSE TRUE AT1G64450.1 proline-rich family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23930.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE94038.1); contains InterPro domain Collagen helix repeat; (InterPro:IPR008161); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847); contains InterPro domain Cell surface antigen; (InterPro:IPR004829) -0.050923403287421 -0.566232595608495 0.582725297724766 1 -0.450278909688866 3.78565381618034 -0.050923403287421 0.0643444733040305
AT2G39170_at 7.62985999528693 7.72395839436519 7.83148325682138 7.71496178323806 7.73399303726875 7.67092855299258 7.98702448510483 8.24257155089713 6.87737089627841 7.16870142820687 7.3543345881313 7.8140002583578 7.35603448135844 7.44739548257259 7.18853181247315 7.49376133808719 6.95331408887724 7.12233141029471 7.20786189622192 0.182119823549371 0.174060478895128 0.187450349446606 0.178203671721038 0.18840845829483 0.170691061856215 0.180760832217198 0.177496926775819 0.186866441319746 0.173502368785145 0.172983242046575 0.174417889914155 0.175767326573427 0.184857846774643 0.180053960729108 0.172092515150603 0.184190164194346 0.18081363897346 0.175227132554416 2 2 - 16341809 16342371 16342119.364 16341708 16343288 - gene protein_coding_gene FALSE TRUE AT2G39170.1 similar to Os08g0152500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061004.1); contains domain FAMILY NOT NAMED (PTHR21146) 0.0492781217249969 0.566161793339681 0.582771761093073 1 -0.450318265459468 15.0297764683742 0.0492781217249969 0.0524081969441247
AT1G54520_at 9.9029822484302 10.0369232324141 10.1525558905596 10.1592645895377 10.0450051712640 9.93933446174226 10.4983848894620 10.3956780117458 10.4014007275981 10.3266882123955 10.3988478868389 10.1579379503203 10.2128148884835 10.3005362464892 10.2748751441173 10.5156515929021 10.3763769886994 10.4027479349928 10.1426682078573 0.0842868509773317 0.0799370485303764 0.0804173906471057 0.0853880568429105 0.0808434274752603 0.0877334435600519 0.0836479491839511 0.081933666972703 0.0941965939611098 0.0821925242047149 0.0823769613897158 0.0824557760244386 0.0863701060657747 0.0823458938073039 0.0820157011559551 0.0792269337696705 0.0825934943757182 0.0859620948541248 0.085124253039452 1 0|1 /|+ 20368161 20369514 20369018.778 20367115 20369728 + gene protein_coding_gene FALSE TRUE AT1G54520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57345.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO19365.1); contains InterPro domain Protein of unknown function DUF1517; (InterPro:IPR010903) -0.04736543537431 -0.565997520384566 0.58287957138878 1 -0.450409559555768 20.4513790427557 -0.04736543537431 0.0344809823511031
AFFX-r2-Bs-dap-5_at 5.5126056269443 6.40230253822371 7.62844992963199 6.31192517492083 8.24082672205647 6.01573832925014 8.23657346301525 5.96523342813647 8.01560598460196 8.35854472095407 8.63644925066635 8.80984365676182 7.78520078762839 8.30841477206438 8.08017580565548 8.56839661796245 7.69272621223619 7.32399709492087 8.34257787084669 0.239242981546456 0.234634058219816 0.230913690298634 0.232443688810558 0.222341915797898 0.235198911190393 0.218915044407556 0.221225365700811 0.242200403002015 0.225586155206894 0.223101691358192 0.222254831488540 0.227074238891347 0.229341379039516 0.218915044407556 0.230887899600364 0.220913670564369 0.231288090084336 0.221214992538429 NA NA NA NA NA FALSE FALSE 0.215898637077175 0.565683500450129 0.583085688350729 1 -0.450584005793324 14.9839869266247 0.215898637077175 0.615130876648096
AT3G24310_at 0.931951320324313 0.861821204373244 0.619356506864211 1.01352821833883 0.74078785057449 0.789417529603142 0.730692704604219 0.947127826078105 0.93098415291091 0.905888608917641 0.858793460819469 0.486200708654162 0.822123805495851 0.756954978726131 0.996520722563142 0.596619457785106 1.00602228664006 1.20262288004211 0.77361624682388 0.198348993113042 0.191400946520047 0.199327121101398 0.193320026216231 0.191220333746105 0.194729720171343 0.194670645435578 0.194462333410082 0.193677476242503 0.194196121570271 0.191220333746105 0.200883597918896 0.198326661983346 0.193597161367765 0.198137669658334 0.193704713367981 0.200765604419389 0.198549951468499 0.197154855149074 3 3 - 8811349 8812071 8811630.364 8811138 8812369 - gene protein_coding_gene FALSE TRUE AT3G24310.1 MYB305 (myb domain protein 305); DNA binding / transcription factor snapdragon myb protein 305 homolog (myb) similar to AtMYB79 (myb domain protein 79), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G13480.1); similar to Os03g0142600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048933.1); similar to Os02g0618400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047449.1); similar to Fgenesh protein 125 [Beta vulgaris] (GB:ABD83304.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0532782263965957 -0.565622899219854 0.58312547036529 1 -0.450617660892178 1.68478304033252 -0.0532782263965957 0.0792088756332785
AT1G78220_at 1.03673248945521 0.962990199301998 1.10799482101496 1.29389749803471 0.449837386627736 0.898054022153448 0.717486955487529 1.20596441428933 0.638885380664134 1.12248801243664 0.500642504736473 0.807196887940106 0.785637691323954 0.656857398505713 0.828212349299182 0.67013322951387 0.979461150675687 0.710959934912293 0.705050183127612 0.184988852342411 0.174406033416185 0.176912189975456 0.183505126213692 0.176321433785932 0.177095969620828 0.174184388555678 0.176792878482417 0.180713537252356 0.175063377361427 0.181133312562237 0.172120136563740 0.17536684825035 0.1913063413828 0.178980141645580 0.172120136563740 0.172120136563740 0.178500819629125 0.177654262600642 1 1 - 29430632 29431427 29431096.909 29430614 29432074 - gene protein_coding_gene FALSE TRUE AT1G78220.1 GF14 PI/GRF13 (GF 14 pi chain); protein binding / protein phosphorylated amino acid binding 14-3-3 protein GF14 pi similar to GRF10 (GENERAL REGULATORY FACTOR 10), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G22300.3); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.0615505656942607 -0.56554066984111 0.58317945261105 1 -0.450663321844992 1.74138414101538 -0.0615505656942607 0.119834089671445
AT1G18150_at 7.3278016737982 7.4582834747494 7.0325254164552 7.48134766263695 7.21666601625837 7.28424449119057 7.67058325956912 7.98242200213142 7.56600298637081 7.00245367409022 7.16384125433784 7.42606071342655 7.45758678441567 7.76758048687711 7.25601304603978 7.65631558942552 7.4674623465785 7.23562661886252 6.99017910466227 0.158581478786868 0.161029522457652 0.161178524389007 0.152038144534291 0.166612558145217 0.159930828097475 0.152266050435923 0.167236343482908 0.154560538587234 0.160417705307938 0.157394766526007 0.158128313910837 0.162162530727705 0.156240611563534 0.163559989910642 0.153776639575349 0.160022776533027 0.167954622900015 0.158437708581627 1 1|0 -|/ 6244830 6245596 6245135.1 6244377 6247762 - gene protein_coding_gene FALSE TRUE AT1G18150.1|AT1G18150.2 ATMPK8 (Arabidopsis thaliana MAP kinase 21); MAP kinase ATMPK8, Identical to Mitogen-activated protein kinase 8 (EC 2.7.11.24) (MAP kinase 8) (AtMPK8) (MPK8) [Arabidopsis Thaliana] (GB:Q9LM33;GB:Q9LMS2;GB:Q9MB23); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to MPK9 (MAP KINASE 9), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G18040.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to double HA-tagged mitogen activated protein kinase 15 [synthetic construct] (GB:ABG54342.1); similar to double HA-tagged mitogen activated protein kinase 8 [synthetic construct] (GB:ABG54335.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0567388863195479 -0.564794908181354 0.583669154536157 1 -0.451077149487187 14.7392456379503 -0.0567388863195479 0.0979368864034582
AT2G25150_at 1.70439129881319 1.41448473612230 1.62945875479931 1.5191936371599 1.34826333795529 1.51055507599017 1.43777143418749 1.54185162861182 1.79491454533513 1.36370777978583 1.34454787556502 1.79723425929390 1.51467033966265 1.69411880967975 1.76048715054723 1.63921147919513 1.59929376834060 2.29041503299256 1.5846217118948 0.197421369489699 0.201692816651497 0.203918485103876 0.194829994335752 0.194704644226680 0.197287196729163 0.200229508708157 0.203517671457017 0.195348933525873 0.195688660318765 0.198914861763396 0.202292335510225 0.210768441729148 0.199240266684772 0.213321185270206 0.197941055787552 0.203626207948768 0.202593693198519 0.199506436217372 2 2 - 10709725 10710185 10709992.545 10709442 10711373 - gene protein_coding_gene FALSE TRUE AT2G25150.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G23510.1); similar to Transferase [Medicago truncatula] (GB:ABE89145.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.0505794603900744 0.564282161268061 0.584005975074846 1 -0.451361378434862 3.15628558049570 0.0505794603900744 0.0632006214367827
AT4G40050_at 4.45812768647116 5.01272871123261 4.57407922379431 4.55274598051013 6.4074464892654 5.49176851610913 5.25927142011636 5.38056320177364 5.59380518479819 5.43530175828148 5.50413656970331 4.95988132300497 5.34083245462935 5.35633200182022 4.86140055295112 4.97271737928164 4.51068106556337 5.56620000319164 5.53008885261409 0.191610092370468 0.189634774305421 0.197978599675493 0.199315300756133 0.199230840112044 0.200869169491384 0.201740005033118 0.189661417631665 0.201082797279158 0.190312064161818 0.191027494571240 0.195520147852337 0.197306222301381 0.201176277532577 0.189634774305421 0.189634774305421 0.201149647268568 0.197551986626749 0.198306352920477 4 4 - 18561210 18561990 18561508.636 18560854 18563832 - gene protein_coding_gene FALSE TRUE AT4G40050.1 signal transducer similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03570.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54686.1); similar to Os09g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063437.1); contains InterPro domain Regulator of G protein signalling; (InterPro:IPR000342) -0.0784359828042108 -0.563863812542521 0.584280862580288 1 -0.451593100454263 10.4689687039922 -0.0784359828042108 0.186483183053385
AT1G22710_at 11.0146837384249 11.4206374246777 11.0274159435770 11.1584814169549 11.6347964205446 11.0555298461165 11.6532548989802 11.6551495978525 10.7280087229442 10.9378438435666 11.2245852931446 11.3987971782560 11.5022033726759 11.0522872496745 11.0860820690664 11.5021258683112 11.0389037665049 10.8740422466282 10.9386081829217 0.09856745822087 0.094534042938959 0.0965636301542322 0.0987127309916914 0.0938474959054625 0.105483825060304 0.0948514787460099 0.0964807707338212 0.116214485110716 0.0933280063298282 0.096824163232299 0.0933280063298282 0.0933280063298282 0.107502165879417 0.101114751716630 0.0933280063298282 0.104271369836144 0.0950350619759012 0.093612337537376 1 1|0 -|/ 8030911 8031941 8031592.7 8030630 8033106 - gene protein_coding_gene FALSE TRUE AT1G22710.1 SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both α- or β-linkage. Identical to Sucrose transport protein SUC2 (Sucrose permease 2) (Sucrose-proton symporter 2) (Sucrose transporter 1) (SUC2) [Arabidopsis Thaliana] (GB:Q39231;GB:O80550;GB:Q8RWQ6); similar to ATSUC8 (SUCROSE-PROTON SYMPORTER 8), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G14670.1); similar to ATSUC5/SUC5 (SUCROSE-PROTON SYMPORTER 5), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G71890.1); similar to SUC1 (SUCROSE-PROTON SYMPORTER 1), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G71880.1); similar to sucrose transporter SUC2 [Brassica oleracea] (GB:AAL58072.1); similar to sucrose carrier [Ricinus communis] (GB:CAA83436.1); similar to sucrose transporter SUC1 [Brassica oleracea] (GB:AAL58071.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) 0.0624246446014751 0.563697729427698 0.584390011127035 1 -0.451685048610618 22.3665096427295 0.0624246446014751 0.124494749094580
AT2G39320_at 1.12659666433984 0.942349463419626 1.48138333214338 1.06669535292221 0.885758136238032 1.03354572442497 1.19048807782083 1.05308438494750 0.98582238125451 1.01593457332195 0.936515887965752 0.988059902537686 1.38207990968514 1.42651968835688 0.980887167836259 1.10049986025186 0.6601498996286 1.33184789054895 1.09104158964951 0.188597695585341 0.192133179596197 0.189901319920274 0.187449814859496 0.184922836465286 0.184922836465286 0.184922836465286 0.186008627518482 0.187906092334822 0.198584040165162 0.202166174386226 0.190887953615668 0.188687033095558 0.191060744168930 0.193211676236528 0.188131558866742 0.192710469008515 0.190784870557876 0.187341318166609 2 0|2 /|- 16424670 16425216 16425054.222 16424555 16425595 - gene protein_coding_gene FALSE TRUE AT2G39320.1 OTU-like cysteine protease family protein similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G03330.2); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.054301583288132 0.563647540006464 0.58442299736224 1 -0.451712829842786 2.16336407899541 0.054301583288132 0.0859428728281114
AT3G22930_at 1.82567110140770 1.99429199418547 2.46312626273094 2.55678979858807 1.22479405155456 2.03423927592256 1.11819977247760 1.61939940004630 2.0408141960901 1.94626154252175 1.59058115729067 1.50647124780421 1.70142874609168 1.79188736675903 1.47607969744934 1.61262928807030 1.72177074856301 1.79321464827738 1.81149833077801 0.172225596009885 0.172320058096552 0.174955190368014 0.179580703367774 0.171082204236063 0.170562880404631 0.175373778767211 0.173419884914808 0.172571682094605 0.187621701624686 0.176127177560234 0.173419103337895 0.1793769861298 0.174384468576021 0.173549096000205 0.179668901840402 0.172617418973879 0.176836906022557 0.175953537319746 3 3|0 -|/ 8125571 8125714 8125634 8124090 8125938 - gene protein_coding_gene FALSE TRUE AT3G22930.1 calmodulin, putative similar to CAM8 (CALMODULIN 8), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G14640.1); similar to calmodulin NtCaM13 [Nicotiana tabacum] (GB:BAB61919.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0733733097890036 0.563503911463279 0.58451740051218 1 -0.451792319376782 3.64562189994823 0.0733733097890036 0.16810445789632
AT2G23400_at 1.98227952210532 1.87734301634734 2.12394136841352 2.1487191200626 1.86601888028573 1.99418264716464 2.05819518100301 2.24949971329102 2.06092513459029 2.3628128714671 2.12265660193829 2.10265082316921 2.1255061998906 2.47147153260351 2.22587442835257 1.59262607733358 1.87716119990401 2.47086762581069 1.63282727074192 0.16204391348656 0.159638124851015 0.159163861497699 0.1659517944184 0.158648378883869 0.163501405936860 0.164606673603016 0.170510798510067 0.158648378883869 0.160859183011755 0.159976125807352 0.159723329281599 0.162278109114812 0.161709797807844 0.164860520110517 0.17075088219389 0.159382422227576 0.171200955658470 0.164484331824159 2 2|0 -|/ 9971831 9972283 9971930.556 9971058 9972309 - gene protein_coding_gene FALSE TRUE AT2G23400.1 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative similar to ACPT (ARABIDOPSIS CIS-PRENYLTRANSFERASE), dehydrodolichyl diphosphate synthase [Arabidopsis thaliana] (TAIR:AT2G23410.1); similar to Undecaprenyl pyrophosphate synthase [Croceibacter atlanticus HTCC2559] (GB:ZP_00949814.1); contains InterPro domain Di-trans-poly-cis-decaprenylcistransferase; (InterPro:IPR001441) 0.0480664323269105 0.563431501314861 0.584564996814568 1 -0.451832386711815 4.10875088278002 0.0480664323269105 0.0440011629216598
AT1G15220_at 4.12826947557756 4.08985269954633 3.55658611425132 3.87562973337119 4.44257001654345 4.43473135173173 3.60071833339999 3.92863764035284 3.49361405895973 3.50294119625422 3.42652965528556 3.48289637216548 3.78111127090017 3.77585529235364 3.05335011628144 3.50261273903818 3.69490625045527 3.67224319937684 3.75248498171447 0.214767011882691 0.215106373248714 0.212173911592561 0.216904805594547 0.211748331631752 0.216098331266830 0.212736828828416 0.212518602012952 0.214850993223328 0.211008574507279 0.213643352167959 0.210738693624965 0.211224942216554 0.211682275557192 0.218604805427278 0.212869794025512 0.214215320593663 0.221330533230107 0.214909241080341 1 1|0 -|/ 5240491 5241047 5240756 5240024 5241533 - gene protein_coding_gene FALSE TRUE AT1G15220.1|AT1G15220.2 ATCCMH; oxidoreductase|ATCCMH Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2. similar to Os02g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046539.1); similar to cytochrome C-type biogeneisis protein cycL [Aurantimonas sp. SI85-9A1] (GB:ZP_01227058.1); contains InterPro domain Cytochrome C biogenesis protein; (InterPro:IPR005616) 0.0530922332139215 0.563173823977334 0.584734388794637 1 -0.451974930325834 7.57297518274258 0.0530922332139215 0.0794652989547952
AT3G46390_at -0.0230427624251471 0.0299618768376888 -0.198398191788713 -0.203322772400359 0.227864367821226 0.360359802408685 -0.440375361176069 0.262386924003156 0.680668700944658 -0.0247017243237782 -0.0435190125557402 -0.328548262325955 0.117630569862363 0.731751692227804 -0.0285199940427341 0.143579428485888 -0.500059102209839 0.0863447096895379 0.0522889621276837 0.347636735838281 0.347636735838281 0.368740853229259 0.385800477553314 0.347636735838281 0.347636735838281 0.347636735838281 0.347636735838281 0.377298507287292 0.347636735838281 0.347636735838281 0.36416659907666 0.378171180835892 0.347636735838281 0.347636735838281 0.436496872596467 0.347636735838281 0.347636735838281 0.347636735838281 3 3 - 17082613 17082626 17082618.333 17082240 17082668 - gene protein_coding_gene FALSE TRUE AT3G46390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32337.1) -0.0621798385372348 -0.562312119559059 0.585301045632138 1 -0.452451168703664 0.13113814368886 -0.0621798385372348 0.124101264396698
AT3G52080_at 1.84852258486081 1.57452045461702 1.59346757349164 1.68269082322114 1.49297424574202 1.29686874357225 1.89429813765247 1.41563890655504 1.96325594924071 1.85070456352772 1.94398103060237 1.99969419626098 1.78555047260186 1.73359861959457 1.91250885741807 1.77070238607146 1.90207307774824 1.89445387224596 1.63356892259813 0.199233271436724 0.198089118121333 0.199016918959278 0.204800995781195 0.200346409829470 0.195808728595089 0.200711155436551 0.200368262767077 0.20468258872985 0.196993606780606 0.195808728595089 0.207690968114907 0.204311005604693 0.196180874207155 0.200150219466396 0.198859134489216 0.207916890175221 0.207964705481838 0.19889512524709 3 3 + 19328121 19328650 19328412 19326021 19328821 + gene protein_coding_gene FALSE TRUE AT3G52080.1 CHX28 (cation/hydrogen exchanger 28); monovalent cation:proton antiporter encodes a cation:proton exchanger expressed in pollen similar to ATCHX15 (cation/hydrogen exchanger 15), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT2G13620.1); similar to Sodium/hydrogen exchanger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99622.2); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.0573837527344107 -0.561991845512376 0.585511732148277 1 -0.452628000025437 3.44170441330911 -0.0573837527344107 0.102469695805008
AT2G18540_at 5.18424298589722 4.44905755890606 5.67579969451473 5.08283308386728 4.16089971291215 5.10448851691887 4.58234308141561 5.01759480844757 5.30491753704153 4.99528813845454 5.27563176485373 4.8229895463968 4.75202736813208 4.84710377656269 4.93979922816134 4.72841228843109 5.33620202500305 4.98175813468576 4.60750860341458 0.183128842334498 0.178366895199271 0.188223211878613 0.186868884033494 0.177906504180705 0.190833214155143 0.180712354508724 0.181576425947685 0.184342749984658 0.183043306362781 0.178711864708031 0.182066662746527 0.180910292475682 0.185396241614398 0.185714618273159 0.177906504180705 0.18348375085134 0.177906504180705 0.191921375122396 2 2 - 8049466 8050038 8049740 8049464 8052090 - gene protein_coding_gene FALSE TRUE AT2G18540.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT4G36700.1); similar to preproMP73 [Cucurbita maxima] (GB:BAB78478.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin 2, conserved barrel; (InterPro:IPR013096); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.0944740334723725 0.56183701269843 0.585613600558605 1 -0.452713453164054 9.8720217351092 0.0944740334723725 0.243011570952444
AT1G06390_at 7.46523937580758 7.67281721452287 6.64154185094935 7.2210499927281 7.75349666904893 7.46106832454732 7.63386784425599 7.68721174805412 6.88899684172935 6.58618228092582 7.60463529198303 7.61945300256978 7.46463272111173 7.25045435551983 7.47538012376500 7.30141932793985 6.87502873913423 6.81653020394204 7.02637147791881 0.208457654471026 0.211390695313387 0.214184768431269 0.208457654471026 0.213913838920316 0.218416304352858 0.213027011150011 0.212572529026911 0.217211454745726 0.220120971895528 0.215062895080293 0.209043583439622 0.214510563807627 0.214492288164124 0.211367028776640 0.213800093032527 0.22262316174763 0.229955176663974 0.208457654471026 1 1|0 +|/ 1949340 1950216 1949777.6 1946787 1950859 + gene protein_coding_gene FALSE TRUE AT1G06390.1|AT1G06390.2 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); kinase encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. Identical to Shaggy-related protein kinase iota (EC 2.7.11.1) (ASK-iota) (ASK9) [Arabidopsis Thaliana] (GB:Q39012); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) [Arabidopsis thaliana] (TAIR:AT2G30980.1); similar to BIN2 (BRASSINOSTEROID-INSENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT4G18710.1); similar to shaggy-like kinase etha (OSKetha) [Oryza sativa (japonica cultivar-group)] (GB:CAA73848.1); similar to putative shaggy-like kinase dzeta [Oryza sativa (japonica cultivar-group)] (GB:BAA92966.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80751.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0607983421063203 0.561830799540929 0.585617688547764 1 -0.452716881780521 14.5094325879578 0.0607983421063203 0.118296268849662
AT2G24360_at 10.0251764304578 10.1976022247037 10.1220324987903 10.2103414938429 10.3553368359874 9.9236932896477 9.64196043124839 9.6063320418785 10.2068766956599 10.2593466902515 10.1681880991353 10.1173494178635 10.1402049044213 10.2215833928312 9.57796907824978 10.1490459954939 10.0284070734840 9.80425840789855 10.1460953216672 0.0869588412238529 0.0856923958597312 0.0877550426276455 0.0856923958597312 0.0880341503961195 0.0900607686487811 0.0915719349675896 0.0863570352841283 0.09688508573719 0.0881683905498988 0.0873908805543961 0.0856923958597312 0.0856923958597312 0.087932652838318 0.0917587900057906 0.0857790962303969 0.0900546037659929 0.0952220182732204 0.0856923958597312 2 2 - 10371830 10372470 10372140.818 10371531 10373982 - gene protein_coding_gene FALSE TRUE AT2G24360.1 serine/threonine/tyrosine kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31170.3); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06448.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06449.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0534264039038104 0.5617794132911 0.585651499060193 1 -0.452745236969983 20.1253004218355 0.0534264039038104 0.0821079488747867
AT2G24130_at 1.35158242315275 1.52119667654005 1.63702071460600 2.05466715549998 1.51993252088953 1.44499364780723 1.57569385419430 1.53832988572731 1.69596193383117 1.47374707640457 1.14835749804598 1.28637206511978 1.46607168569763 1.11523335217095 1.59666863007993 1.02559228449796 1.41292907259276 1.82557679655202 1.72872420525943 0.196647372583566 0.193370790907262 0.205515975496010 0.192887021129188 0.193521935958575 0.195298002821669 0.194189710504063 0.194815245698487 0.199930553034062 0.199385415628801 0.202172783533175 0.196641045274411 0.194678075492034 0.198541014797378 0.192808189979649 0.202298106079151 0.205185527564345 0.201576819966608 0.197751681245958 2 2 + 10267636 10268245 10267955.545 10265228 10268300 + gene protein_coding_gene FALSE TRUE AT2G24130.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47570.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to putative protein kinase Xa21, receptor type precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD72444.1); similar to Protein kinase [Medicago truncatula] (GB:ABE94666.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79504.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0528790494700073 -0.561137655401323 0.586073842490389 1 -0.453099156941435 3.07663273226532 -0.0528790494700073 0.0793431468549496
AT2G26380_at 1.14634759375200 1.4799031010423 1.76848218489475 1.55693560986452 1.49960125992478 1.54304082495924 1.20548913590436 1.50973125519660 1.53680071052580 1.86375871329024 1.55467051498753 1.01085031710491 1.85457345620959 1.10470423575884 1.02916697433667 1.21507881603086 1.43285254641980 1.31408876274541 0.98788878928747 0.207300116858285 0.202821962498856 0.210100144843381 0.209949419115956 0.201720287063887 0.201204496492258 0.209351715038421 0.205690490549446 0.218802266081872 0.201204496492258 0.205422026764023 0.206400128838748 0.201204496492258 0.21096208941747 0.204851348520586 0.2030417330745 0.202711612646384 0.210564609316927 0.201204496492258 2 2 - 11233697 11234253 11233979.636 11233693 11235135 - gene protein_coding_gene FALSE TRUE AT2G26380.1 disease resistance protein-related / LRR protein-related similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33600.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT1G33590.1); similar to H0402C08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86230.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0541646651758543 0.560954440592211 0.586194446514691 1 -0.453200127450972 2.85234850768417 0.0541646651758543 0.0866071585664754
AT4G27760_at 4.32553277801068 4.86184615720596 4.08347645685565 3.9562349675915 4.62371424491343 4.09164371528957 4.79809218208621 4.86998053818104 3.90953536646682 2.97779148969861 4.09622390960735 4.01511020303658 3.57653096896862 4.33154785974189 4.46096800305625 3.78596812373224 3.9957615155084 3.85699728069217 3.19714989961979 0.249878856651603 0.252728984180692 0.262476689718165 0.256533914490129 0.243152329911367 0.265951813189384 0.247417998542078 0.243697847285026 0.253287822494291 0.246219940254038 0.243931629559329 0.242059264946552 0.252717556908081 0.251023040252601 0.248411563611953 0.242059264946552 0.258412281605260 0.254574305811444 0.256263779534043 4 4 + 13844288 13845823 13844839.545 13844071 13846752 + gene protein_coding_gene FALSE TRUE AT4G27760.1 FEY (FOREVER YOUNG); oxidoreductase Encodes an oxidoreductase required for vegetative shoot apex development. Mutants display disruptions in leaf positioning and meristem maintenance. similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G53090.1); similar to forever young oxidoreductase [Lycopersicon esculentum] (GB:AAL60068.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.0641503317030482 0.560816351312502 0.586285354644636 1 -0.453276208601965 8.13950549750243 0.0641503317030482 0.133160972717997
AT3G42970_at 2.13762122545476 1.95191476157210 1.98580095225762 1.77569455545880 1.7535470896554 2.45988612259689 2.14345798491399 2.11325491656305 2.66154303161908 2.33228524132415 2.40087085581452 2.39714508164989 2.31961504544193 2.58821824902958 2.54905408835929 2.41642887561340 2.65607278022542 2.42918059386937 2.51875759941827 0.209346713865494 0.199428966528136 0.201982271872668 0.198593213814391 0.202767279985979 0.202074570110907 0.198048331233293 0.194118303847186 0.194118303847186 0.196121155245866 0.197057911222915 0.197526412669417 0.201404670954234 0.202497297986266 0.198869456264058 0.198575012081466 0.201041805186741 0.201222141549345 0.207299010838003 3 3|0 +|/ 15035824 15036106 15035921.6 15035795 15036132 + gene protein_coding_gene FALSE TRUE AT3G42970.1 unknown protein -0.0637260683352687 -0.560329760206624 0.586605751055979 1 -0.453544158724288 4.52703144457787 -0.0637260683352687 0.131619266259142
AT1G18250_at 1.46974576039876 1.48012911417204 1.42222287452666 0.967954950737227 0.871805465836394 1.03136659817140 1.30249410074767 2.00439963496282 1.57378153048239 1.73788181333440 1.93366879725191 2.58339465572086 1.75678247627141 2.25906053888972 2.86240070318394 1.44704126810339 1.43361409796567 1.93402473310670 1.69981197300722 0.21915791979922 0.21915791979922 0.226725600830048 0.221786113193406 0.223228347118818 0.227251954464339 0.222210640338469 0.219578128905510 0.222080221927581 0.227224095371322 0.225306951913096 0.234891684866339 0.226368136091235 0.223455121297907 0.228774274942667 0.227601488868479 0.24119362620614 0.21915791979922 0.230098170677565 1 1 - 6277055 6277662 6277269.273 6276781 6278143 - gene protein_coding_gene FALSE TRUE AT1G18250.1|AT1G18250.2 ATLP-1 (Arabidopsis thaumatin-like protein 1) encodes a thaumatin-like protein Identical to Thaumatin-like protein precursor [Arabidopsis Thaliana] (GB:P50699;GB:Q9LM26); similar to thaumatin-like protein, putative / pathogenesis-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G73620.1); similar to thaumatin-like protein (GB:AAA32875.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) -0.067549021857685 -0.560128641865959 0.586738204718257 1 -0.453654844307406 3.16713490298731 -0.067549021857685 0.147309909176184
AT3G30730_at 2.12742938701406 1.78148392846827 1.92790912870672 2.00530306085946 1.18031444350735 2.08206864667820 1.0590448185975 1.83259709285719 2.30485320888370 1.706492177875 2.23530157828449 2.02007779373813 2.15831828627815 2.17849878997374 1.91977453561173 1.60913995231520 2.14923197776415 2.14780627486314 1.92695210020412 0.211064099411523 0.214918909251452 0.211351037306616 0.207286190597449 0.210631953890928 0.213064373695412 0.216928489423374 0.202692648339876 0.214129870882940 0.211101296887707 0.210901508900964 0.203675163261520 0.207628738403881 0.210544366458754 0.202692648339876 0.207454972978614 0.211307536309414 0.203514409243643 0.211017466795061 3 3 - 12359881 12360052 12359982.545 12359875 12360078 - gene protein_coding_gene FALSE TRUE AT3G30730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54430.1); contains domain HELICASE-RELATED (PTHR10492) 0.0857980830764978 0.559810664339695 0.586947652480289 1 -0.453829767209326 3.76536938546503 0.0857980830764978 0.214560695916585
AT1G56690_at 1.57167173426910 2.06270026178888 1.39250744683668 1.99059896860922 1.39913720889311 2.05515694213852 1.43986613032820 1.55006650886890 1.82267724666499 1.71241886684796 1.59482240958443 1.24643313762849 1.54365427302877 1.64594478328912 1.31148477963548 1.70772151945000 1.66244506180735 1.69345910429673 1.72792845535914 0.202103144369905 0.194662478481712 0.192512138711659 0.195244835639887 0.194864762128155 0.191494144240173 0.194512124599129 0.193025332138325 0.198477091411882 0.198848991066907 0.191037764957790 0.192114137022679 0.195672420454828 0.194330568337376 0.193829766976089 0.195548305863947 0.193811125236848 0.18956163129604 0.189206347201631 1 1 + 21259014 21259481 21259270.636 21257482 21259596 + gene protein_coding_gene FALSE TRUE AT1G56690.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09410.1); similar to pentatricopeptide, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95626.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0751609532808525 -0.559747167979022 0.586989481468066 1 -0.453864686067137 3.33525672849028 -0.0751609532808525 0.176594504596111
AT4G28050_at 4.81154644696199 5.16163521490547 3.07519017022078 3.11507229759709 4.15998183046481 4.46904289079612 4.3508072087924 4.14588072008868 5.1776505788877 4.12658471169613 6.21958283161023 6.73024492211051 5.01800775280172 5.4878766300836 6.37006905587182 5.0109109836525 3.86665064321940 5.62579564011573 4.25489142217215 0.264120009194849 0.262059373313526 0.291229407459827 0.275105473567674 0.263973638680459 0.272235348662562 0.264534764780906 0.266186339317958 0.265506958458968 0.262059373313526 0.262868343722976 0.265533787351882 0.262059373313526 0.272810633437878 0.271357039040280 0.262059373313526 0.276830206900587 0.269171317273261 0.264692108066616 4 4 - 13942598 13943330 13942897.636 13942263 13943738 - gene protein_coding_gene FALSE TRUE AT4G28050.1 TET7 (TETRASPANIN7) Member of TETRASPANIN family similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] (GB:AAC34855.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.0543939013818785 0.559638489358381 0.58706107847204 1 -0.453924443582976 9.19157020332101 0.0543939013818785 0.0885232261860228
AT1G69270_at 7.01648614002406 7.61550301958102 7.64840376443936 7.51485889590825 7.75681848780847 7.51617826721967 6.73177866384096 6.87036307270856 5.4763467210792 5.45647493182659 4.53010892222377 4.56964488610042 5.68100570625138 5.52914331787938 3.53440272314039 5.05093144939207 5.85031344114294 4.84150172180656 5.20294069421439 0.229660653221582 0.218575020187401 0.223847300858425 0.216884006707529 0.21779385913478 0.219347397086089 0.220099817387377 0.224772884987786 0.225230474182001 0.216699368340059 0.217720411179911 0.214312565735496 0.216440940482623 0.216495729781831 0.230786188310386 0.216466348703342 0.223889252807777 0.230346260730473 0.221333410464402 1 1 - 26044608 26045055 26044843.364 26044352 26046365 - gene protein_coding_gene FALSE TRUE AT1G69270.1 RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1); kinase RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G02130.1); similar to Os07g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060207.1); similar to putative protein kinase [Sorghum bicolor] (GB:AAM47583.1); similar to Os03g0756200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051315.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0601631008786684 0.559525032166444 0.58713582850925 1 -0.453986816985792 12.4972832739574 0.0601631008786684 0.116573712514677
AT1G08670_at 1.12223059737046 1.64563972202011 1.11932057571426 1.36832442127136 0.967214136570908 1.46391270903535 0.983650123926633 1.04155024126803 1.31475746247235 1.30183697960109 1.22869263571537 1.33176330911299 1.08248725466592 1.46555909900077 1.09835983729172 0.878008617554161 1.11900908052509 1.66858361984362 1.56256546020255 0.189015231715431 0.189933098345236 0.192890418260725 0.191410829909388 0.192469218950608 0.195501086429943 0.191334202753896 0.201743612856745 0.189268395110158 0.195339566677591 0.20223295642157 0.188488709372390 0.192325150276242 0.190942140041324 0.191182923627419 0.187704079901324 0.196989820117448 0.194221567371692 0.194615287474857 1 1 - 2760465 2761524 2760796.091 2760349 2761576 - gene protein_coding_gene FALSE TRUE AT1G08670.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT3G46540.1); similar to hypothetical protein CC1G_03419 [Coprinopsis cinerea okayama7#130] (GB:EAU86208.1); similar to Os01g0841000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044763.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.0637850397716489 -0.559051727731049 0.58744771431419 1 -0.45424688917147 2.52753593213332 -0.0637850397716489 0.132476925142573
AT3G20110_at 0.896223361527923 0.987121276012884 1.02862908367139 1.12366130905962 0.499373293760735 1.03503672828709 0.969463167994553 0.964151195202773 0.9908633404681 1.33427947149565 1.04194854165198 0.682555069591905 1.10617652939529 0.744318713504791 0.902681260290301 1.01912833924736 1.21271217103193 1.56356396082237 1.01351123594037 0.188624974667808 0.187840957497574 0.203056797018732 0.188019107226157 0.189944340309949 0.190096170882372 0.187961773780676 0.191001235505681 0.199679147672623 0.190440309932704 0.186971975643534 0.191439964047134 0.196053591505137 0.191984401862528 0.186971975643534 0.191193164000387 0.201421193551412 0.194391841874891 0.190507981433139 3 3 + 7022551 7023094 7022901.455 7021338 7023285 + gene protein_coding_gene FALSE TRUE AT3G20110.1 CYP705A20 (cytochrome P450, family 705, subfamily A, polypeptide 20); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A23 (cytochrome P450, family 705, subfamily A, polypeptide 23), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20140.1); similar to CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20100.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94648.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0556568779662723 -0.558929690054442 0.5875281457257 1 -0.454313913108444 2.01146755485297 -0.0556568779662723 0.095456094004678
AT3G14370_at 1.23259898612628 0.879742739751164 1.04268530785075 1.03075470910838 0.971744897800586 0.910087767124692 0.9953723408323 0.972075190037048 1.01274906982426 0.847309632681904 0.905773740647316 0.777742412679572 1.26441874108229 0.81938224444257 1.11373172859757 1.00561198136953 2.06452999966228 0.960711583220304 1.08901844746728 0.202323988731786 0.206679329142593 0.203413701850897 0.210201281247496 0.20512434866379 0.20452807430773 0.204076384758484 0.202641822446824 0.204282220207026 0.204344064241576 0.200970454435257 0.206857352216252 0.202050568423845 0.200970454435257 0.206728002854204 0.204227543210997 0.213897066009252 0.208695963262354 0.204853299107200 3 3 - 4798044 4798606 4798354.818 4797852 4799511 - gene protein_coding_gene FALSE TRUE AT3G14370.1 WAG2; kinase The WAG2 and its homolog, WAG1 each encodes protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. similar to WAG1, kinase [Arabidopsis thaliana] (TAIR:AT1G53700.1); similar to putative protein kinase [Pisum sativum] (GB:AAB71418.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0499164717946325 0.558564798218088 0.587768669842026 1 -0.454514232179616 2.05288950263915 0.0499164717946325 0.0621539090830447
AT3G20560_at 2.29487771302007 2.84594999539806 2.45840939941403 2.14807962857921 2.7365513429896 2.48785314428652 2.76671466151553 3.14450218333851 1.80355677410549 2.14101061723919 2.55581838881883 2.95657971560904 2.63077425018025 1.99826837918184 2.86563805970814 2.38834598301391 2.26112707704182 2.12640780566078 2.17289360012980 0.226164312281251 0.219431911157780 0.224589721509941 0.227341714761269 0.231451314618385 0.223906356343689 0.225475129079511 0.220652044143964 0.220391826859394 0.223769100403291 0.220722993463809 0.218586181765238 0.224575578272526 0.220440487147082 0.220042736260876 0.218749629430043 0.221459156729585 0.218586181765238 0.218586181765238 3 3|0 +|/ 7185578 7186183 7185856.889 7182041 7186573 + gene protein_coding_gene FALSE TRUE AT3G20560.1 ATPDIL5-3 (PDI-LIKE 5-3); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL5-4 (PDI-LIKE 5-4), electron carrier/ protein disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G27080.1); similar to thioredoxin-related [Arabidopsis thaliana] (TAIR:AT1G50950.1); similar to Thioredoxin, putative [Medicago truncatula] (GB:ABE91160.1); similar to Os07g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059821.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09970.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) 0.0642142670381496 0.558453254489915 0.587842206008169 1 -0.454575443141567 4.86637906918102 0.0642142670381496 0.134555919647535
AT3G25855_at 1.50941983504445 1.23245210235224 1.05779330831297 1.30535544592474 1.17384506759314 0.921094810605149 1.48316585092157 1.24477988836448 1.56114485139165 1.49442351286404 1.87659402460028 1.73011981212941 1.58324985690589 1.41856353877406 2.10896384786736 1.91556813798962 1.51991525077878 2.01783928037443 1.82478339101031 0.181461629142478 0.182390291851012 0.18444926014089 0.190533398626883 0.182328276207221 0.182055681676073 0.183643106398120 0.180355505285409 0.185383408401617 0.185491880384889 0.189317206849510 0.187665515845941 0.183171217032161 0.194657193568147 0.184789460294215 0.185301157875317 0.183053319847893 0.187080286385362 0.189270370929264 3 3 - 9460855 9461360 9460981 9460658 9461532 - gene protein_coding_gene FALSE TRUE AT3G25855.1 metal ion binding similar to Os09g0408500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063141.1); similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36252.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.0541822304031034 -0.558423896285954 0.587861561466029 1 -0.454591551898426 2.94005610718958 -0.0541822304031034 0.088021511480007
AT2G17150_at 4.79205324900739 5.03380135410433 5.10706664253119 5.00571116395447 5.29128374112167 5.18493849058485 5.53616896079095 5.04915566931524 4.81533680803135 4.93128586895199 4.64726328811259 4.87301442721 4.98829806809228 4.917719738884 4.62747132501185 5.33409320741191 5.71131575098412 4.6389663518465 4.9525846746792 0.201223464943285 0.202090331631336 0.203434044681873 0.203631741778531 0.201223464943285 0.216087952104935 0.201237596977872 0.201223464943285 0.215940358163403 0.210439158178686 0.20340103847176 0.210486840709241 0.201223464943285 0.203905131088330 0.203446444006215 0.205254831542933 0.205830026526617 0.211553833851732 0.203112731694115 2 2 - 7474138 7474679 7474410.545 7473923 7478344 - gene protein_coding_gene FALSE TRUE AT2G17150.1|AT2G17150.2 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35270.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270)|similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35270.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains domain no description (G3D.3.30.450.40); contains domain GAF domain-like (SSF55781) 0.055993593525104 0.558311972691561 0.587935354233675 1 -0.454652956729383 10.0585241857171 0.055993593525104 0.0974662452791348
AT3G20780_at 2.93741565209876 2.71876732895598 2.61665597701001 2.51263111150639 3.05139769620553 2.63395375956263 3.17458928350431 2.59781163748911 2.76144305118299 2.76195499739304 3.30638539223452 2.88727575931686 2.67188912121096 3.15259697207043 3.35391751166747 2.58751801919026 3.049057616146 3.25308152717463 2.73540900180947 0.189841898751478 0.193945581017232 0.191288600585648 0.187615165742679 0.187615165742679 0.187615165742679 0.194894968077822 0.198388022210792 0.206785122888200 0.190895043312875 0.200391638483967 0.194468007986291 0.191210334972381 0.192264980612807 0.192246286721473 0.199267378916943 0.190685746904862 0.187615165742679 0.194287590727174 3 3|0 -|/ 7264558 7265748 7265195.111 7263906 7268578 - gene protein_coding_gene FALSE TRUE AT3G20780.1 ATTOP6B (BRASSINOSTEROID INSENSITIVE 3, ROOT HAIRLESS 3) Encodes putative eukaryotic homolog of archaebacterial topoisomerase VI subunit B, TOP6B. Is essential for endoreduplication and is involved in cell expansion and cell proliferation. similar to ATP-binding re (GB:ABE85998.1); similar to putative topoisomerase VI subunit B [Oryza sativa (indica cultivar-group)] (GB:CAE47077.1); similar to topoisomerase 6 subunit B-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAQ75096.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) 0.0631466084868282 0.558307854170214 0.587938069724913 1 -0.454655216059974 5.6732282674607 0.0631466084868282 0.130143568389274
AT4G07480_at 0.733584608697781 0.73975985668633 0.873905366253305 1.21028313471099 0.6713188558463 1.02537656563561 0.689832104703936 1.02399164701534 1.01823664685799 0.984240323204899 0.790015419421806 0.986844977735399 0.948669189154037 0.96222288520216 0.90950157290344 1.15623402422531 1.00269405533999 1.44469495508867 1.17617402329901 0.212405405792693 0.210473751661513 0.214781819442698 0.213899921346473 0.209993582699643 0.211262098898418 0.212085159968861 0.210851581378388 0.221631409372794 0.214980741477708 0.209993582699643 0.21071581417173 0.212755061225899 0.223689469181569 0.21607844978287 0.209993582699643 0.217641728216713 0.222654191532024 0.217488471421758 4 4|0 +|/ 4268925 4269338 4269175.333 4268922 4270170 + gene protein_coding_gene FALSE TRUE AT4G07480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19300.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.0569941150494612 0.558294520710049 0.587946861006651 1 -0.454662530396664 1.91333650044594 0.0569941150494612 0.102410878193173
AT2G01450_at 8.78625159430146 8.66974663748686 9.03967015304269 9.0847650770103 8.80255711558454 8.47987411808214 7.88051608490963 8.02914070299476 8.7653092433795 8.2358321696571 8.41518990630361 8.48436091231124 7.83717453944545 7.82221944871896 7.99035146315774 8.20055386143192 7.95927843193386 8.06752770610655 8.51904693056838 0.159463895405803 0.155116790064598 0.15260600438492 0.149139222430118 0.154810882568128 0.153957878093473 0.167687133582734 0.161253658984719 0.153772450134383 0.156091620863986 0.149139222430118 0.14992209640698 0.155133418072870 0.159743225976569 0.159014238303408 0.149139222430118 0.160398775323178 0.167253475109845 0.165292563954258 2 2 - 199732 200228 199941.636 199510 203125 - gene protein_coding_gene FALSE TRUE AT2G01450.1|AT2G01450.2|AT2G01450.3|AT2G01450.4 ATMPK17 (Arabidopsis thaliana MAP kinase 17); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 17 (EC 2.7.11.24) (MAP kinase 17) (AtMPK17) (MPK17) [Arabidopsis Thaliana] (GB:Q84M93;GB:Q9ZVF9); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to MPK9 (MAP KINASE 9), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G18040.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to double HA-tagged mitogen activated protein kinase 17 [synthetic construct] (GB:ABG54344.1); similar to mitogen-activated protein kinase 9 [Brassica napus] (GB:AAU95462.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0503277234072885 0.558253004529876 0.587974234723894 1 -0.454685303877218 16.8984709261988 0.0503277234072885 0.0651707760135325
AT1G60420_at 7.77266041474133 8.25429029629493 8.49592500419346 8.51544575568287 7.97311827637685 8.16451873787788 7.51816415747219 7.58777264491999 7.25617182403928 7.98546067025166 7.64645824092433 7.12703928135086 6.88148388381551 7.2014727935322 6.85675722130638 7.38939599703651 7.30335165142677 7.3352984758838 7.59560898930384 0.180555354726066 0.18163339129916 0.179030657464547 0.180035540773224 0.178557883069516 0.176775298205314 0.175387928799669 0.184518278910499 0.193529291665789 0.175387928799669 0.175802770504406 0.175458297855037 0.179274925881738 0.190130560131837 0.179716660770115 0.175436758015824 0.183406048514457 0.187158025553788 0.180112027534738 1 1 + 22267380 22267884 22267633.091 22265553 22268073 + gene protein_coding_gene FALSE TRUE AT1G60420.1 DC1 domain-containing protein similar to electron carrier [Arabidopsis thaliana] (TAIR:AT4G31240.2); similar to PDI-like protein [Zea mays] (GB:AAD04231.1); similar to protein disulfide isomerase (PDI)-like protein 3 [Cucumis melo] (GB:AAU04767.1); similar to protein disulfide isomerase (PDI)-like protein 2 [Cucumis melo] (GB:AAU04766.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain C1-like; (InterPro:IPR011424) 0.054636715235137 0.558195028547122 0.588012462348303 1 -0.454717103630937 15.4502724214572 0.054636715235137 0.090557023764922
AT1G02280_at 8.31482638339569 8.27336827822244 7.73928442036585 7.64433397037356 8.80267389392885 8.33090787957043 8.10599832483836 7.796259462457 7.3221497698399 7.99956314795864 7.54826513088713 8.54515060574663 7.75921252073855 7.04461078694246 8.32587071746491 7.50371324007403 7.31493317963565 7.18957064886446 7.99816618864604 0.211874476124555 0.212979190274220 0.210120693160454 0.211537078514843 0.210149590112942 0.218546181608406 0.211262741982128 0.226170959095431 0.226464738963781 0.210381595256148 0.214630562669008 0.209249577320075 0.225915868792778 0.224126191882903 0.220893288817862 0.215828739585913 0.221721035499080 0.233690287685914 0.214943670176726 1 1|0 -|/ 448813 449719 449255.1 448465 450425 - gene protein_coding_gene FALSE TRUE AT1G02280.1 TOC33 (PLASTID PROTEIN IMPORT 1); GTP binding Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo. similar to ATTOC34/OEP34 (Translocase of chloroplast 34) [Arabidopsis thaliana] (TAIR:AT5G05000.1); similar to TOC33 [Brassica napus] (GB:AAQ17548.1); contains InterPro domain AIG1; (InterPro:IPR006703); contains InterPro domain Chloroplast protein import component Toc34; (InterPro:IPR005688) -0.0563451264279979 -0.558154633213308 0.588039098596298 1 -0.454739258585311 15.8395610212819 -0.0563451264279979 0.099297146161169
AT1G55300_at 5.61213160520541 5.97456891622976 4.9917370919916 5.1263046209687 6.74583452948847 6.55386167879893 5.6720626810578 6.37914574259686 5.76885279269276 5.09526838634155 5.64466868383759 5.71800205569143 5.78840946572242 6.15977801676629 5.22118000699461 5.07676287600021 4.34706661268647 5.72667915940301 5.74954528124237 0.225307068764210 0.221599698112279 0.235830502730404 0.224925428012095 0.234796575023657 0.223920304820749 0.236499256199518 0.221524717194454 0.236134736554458 0.233066751555914 0.223467693125359 0.223355201474702 0.227187136283364 0.228192031874138 0.233919313514072 0.226758538579439 0.264850487437397 0.225109992337333 0.221524717194454 1 1|0 -|/ 20631905 20633121 20632515 20631690 20633359 - gene protein_coding_gene FALSE TRUE AT1G55300.1|AT1G55300.2 TATA-binding protein-associated factor TAFII55 family protein|transcription factor similar to unknown [Solanum tuberosum] (GB:ABA81879.1); contains InterPro domain TAFII55 protein conserved region; (InterPro:IPR006751)|similar to TAFII55 protein conserved re (GB:ABE89966.1); contains InterPro domain TAFII55 protein conserved region; (InterPro:IPR006751) -0.066306608207501 -0.557976380903362 0.588156643862383 1 -0.454837003651031 11.3810594481572 -0.066306608207501 0.143362943035444
AT1G47220_at 0.791046769188448 1.12019901693839 0.985763645222472 1.03839298069378 0.620838381665189 0.823001230438563 1.31261168115244 0.900689621314323 0.967747129624314 0.527537600540853 0.72985892695965 1.12376870982455 0.560270677720078 0.894040538837276 0.984931871755226 0.918629696045755 1.07123088145772 0.76566434209469 0.991907014608112 0.215383487928362 0.223850719997538 0.216299820301557 0.209547993169687 0.216328867929728 0.212247166852726 0.215147703289420 0.210583236546935 0.219213090724456 0.21658906967773 0.210559873669037 0.213142411730115 0.214414619200342 0.213174181976904 0.223591522035666 0.209770760885527 0.225672171143530 0.223516234854463 0.212559250064340 1 1|0 +|/ 17306675 17307587 17307152.333 17306116 17307637 + gene protein_coding_gene FALSE TRUE AT1G47220.1 CYCA3;3 (CYCLIN A3;3); cyclin-dependent protein kinase regulator similar to CYCA3,2, cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT1G47210.2); similar to cyclin-dependent protein kinase regulator-like protein [Brassica rapa] (GB:ABB97043.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.0560760859904794 -0.557776465369113 0.588288489315602 1 -0.454946592872536 1.80412460108235 -0.0560760859904794 0.0981481856166539
AT1G60650_at 5.40841433980432 5.35202103296996 5.45682045060197 5.58989335596716 5.50373634419511 5.50757523708176 5.17904011403904 5.17497551339703 4.16518151997542 4.55614452054797 4.23710277986908 4.0159905122168 4.29781528289366 4.22909948854414 4.32001007477184 4.42665531274403 4.39654423480510 4.30447584490109 4.54584974944735 0.216441313353007 0.205836273193506 0.211625526534707 0.218691315346749 0.205836273193506 0.216702607787645 0.208318718103394 0.217322762375994 0.214732796491933 0.211267210513918 0.208418123240132 0.207587084851046 0.210751827012275 0.205836273193506 0.211073711668533 0.209378067565070 0.22708799392162 0.208908546028738 0.213583518860506 1 1 + 22345151 22345776 22345404.364 22343474 22346002 + gene protein_coding_gene FALSE TRUE AT1G60650.1|AT1G60650.2 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein [Arabidopsis thaliana] (TAIR:AT5G04280.1); similar to Os07g0187300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059075.1); similar to RNA-binding protein [Triticum aestivum] (GB:AAK01176.1); similar to Os03g0681900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050909.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0459816791309412 0.557757246340926 0.588301165198459 1 -0.45495712636808 9.74698635917377 0.0459816791309412 0.0250301071140846
AT4G08640_at 0.153846497905705 0.73625333306871 0.229220728701679 1.08190204107881 0.560482738336886 0.487351962278476 0.53146503295825 1.17437649030676 0.241563682200354 0.86858294890474 0.459006278116692 0.804279022802598 0.458957941734381 0.494015152088404 0.0285106475799507 0.397534048651258 0.615070796133408 0.717454382801738 0.709060031936487 0.239668215834004 0.233976890333995 0.230128855494808 0.241975659119263 0.237330290850942 0.230128855494808 0.230128855494808 0.235545282797770 0.253831463444177 0.231178229323832 0.233148360328365 0.239813030095306 0.230128855494808 0.230128855494808 0.231233287284873 0.230128855494808 0.235906346633714 0.24844116220571 0.248406498639649 4 4 + 5513358 5513890 5513652.625 5513310 5514171 + gene protein_coding_gene FALSE TRUE AT4G08640.1 ATP binding / protein binding similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G03960.1); similar to chaperonin containing TCP1, subunit 8 (theta) [Danio rerio] (GB:NP_957356.1); similar to chaperonin containing TCP1, subunit 8 (theta) [Danio rerio] (GB:AAQ91225.1); similar to Os03g0804800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051623.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423) -0.0843973291180997 -0.557542208353605 0.588443003034027 1 -0.455074960339509 1.17099023045562 -0.0843973291180997 0.210881603933374
AT1G31020_at 5.00697217919287 5.02891435764554 4.72569708065129 4.85108860878411 5.4145699284094 4.6660122988083 5.05554069370827 5.10045101919744 4.32977794974641 4.17831042959382 4.64686187514496 4.46150928858049 4.1496951125098 4.30910595714426 4.34884689610239 4.46274174716131 4.12642472986404 3.86851489374964 4.36158901739449 0.219940837992145 0.230935534403545 0.226753179499027 0.234339672244706 0.228343307804551 0.231593759011064 0.230641799727285 0.227519100020763 0.239901800239161 0.217846417415366 0.220690864358664 0.219526534856104 0.229882617749281 0.226558361881412 0.221318291037128 0.218819350970192 0.226170179821898 0.225859268054147 0.218339878538948 1 1|0 +|/ 11057348 11058591 11057705.4 11057086 11058848 + gene protein_coding_gene FALSE TRUE AT1G31020.1 ATO2 (Arabidopsis thioredoxin o2); thiol-disulfide exchange intermediate similar to ATO1 (ARABIDOPSIS THIOREDOXIN O1) [Arabidopsis thaliana] (TAIR:AT2G35010.2); similar to putative thioredoxin [Pisum sativum] (GB:CAJ84246.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0634037431594401 -0.557471587899984 0.588489587822545 1 -0.455113648779936 9.27445828485483 -0.0634037431594401 0.131630791875196
AT2G24860_at 9.79131586782084 9.9593051483894 9.93221376061924 9.95015725828793 9.82049918608799 9.23534161122502 10.254157543421 10.2836444452155 9.7844911792626 9.8540973381029 10.2188826292974 10.125207138429 9.71991735506803 10.2698222522780 10.0383646954453 10.0808451697384 9.33186842512203 9.70404686022856 9.50237630878874 0.105766447497894 0.103858030679692 0.103903749031091 0.104571699068545 0.106076862831683 0.116279984882725 0.10786102685202 0.106965148763853 0.121122861189577 0.108145454774122 0.103642921711386 0.104184707595823 0.11160445879059 0.103642921711386 0.103642921711386 0.103642921711386 0.112923417598201 0.118902636720273 0.111881148438076 2 2|0 -|/ 10594197 10595281 10594781.125 10593854 10595408 - gene protein_coding_gene FALSE TRUE AT2G24860.1 chaperone protein dnaJ-related similar to Tsi1-interacting protein TSIP1 [Nicotiana tabacum] (GB:AAD18030.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) -0.0575442117536085 -0.557356161406797 0.588565733110749 1 -0.455176873668804 19.7282164815095 -0.0575442117536085 0.105523794850084
AT2G20650_at 3.87080532911701 3.46790991959269 3.64676825997179 3.12145700852248 3.59318392778275 3.65501704825132 3.73647574852097 3.47000953408211 4.10479402383702 3.48845584062349 3.76586878389021 3.68279265640383 3.48744771692793 3.82687829149163 4.03516717522442 3.62922952207931 3.89909300849829 3.97749327732735 3.74374673433488 0.201012259597261 0.195648931749137 0.205082588104658 0.195648931749137 0.195648931749137 0.197360840546888 0.200801740707563 0.205589993742898 0.203565877874951 0.199528711648554 0.196170853787185 0.195648931749137 0.208090015287852 0.1988152711415 0.201155412147307 0.195648931749137 0.205253013274999 0.197517768463254 0.202375535963014 2 2|0 -|/ 8911054 8911824 8911393.2 8910718 8914420 - gene protein_coding_gene FALSE TRUE AT2G20650.1|AT2G20650.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G28370.1); similar to hypothetical protein DDBDRAFT_0205494 [Dictyostelium discoideum AX4] (GB:XP_642403.1); similar to Os07g0501900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059722.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.061598066990435 -0.557341946128035 0.588575111096567 1 -0.455184659239633 7.35370093210289 -0.061598066990435 0.123961291648189
AT1G07025_at 0.36222981316113 0.432579152535379 0.340635612465242 0.378288474720474 0.332345539972929 0.390180357121002 0.525481769407393 0.447736312616353 0.369407895146794 0.138584949411568 0.897708732833616 0.26193006831873 0.377122279808725 0.27093555332677 0.261805094009272 0.176142031975148 0.632304621532321 0.204617512416657 0.677563540543396 0.212213551660941 0.213779688808415 0.213935394455753 0.211911547582061 0.21148493030557 0.209668019957798 0.209885250797329 0.211181930763264 0.219522694473791 0.214971593983562 0.211224187983194 0.210743057370791 0.215736338420805 0.218261561265971 0.208900034691228 0.214612846708873 0.219035318608529 0.216290719384348 0.221647519334388 1 1 - 2157759 2158036 2157904.182 2157657 2158157 - gene protein_coding_gene FALSE TRUE AT1G07025.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G30160.1); similar to Mitochondrial carrier protein [Ribes nigrum] (GB:CAA07568.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.0457544953915417 -0.557337377437991 0.588578125131623 1 -0.455187161427377 0.791437728239108 -0.0457544953915417 0.0217223172547013
AT3G10870_at 3.56421452141192 3.65478120229242 3.62071246819275 3.10439721368576 3.03709828697625 3.3522477719748 3.13321930007763 2.93478981422357 4.28844498896067 3.38410865602977 3.64602030313195 4.61109454438537 3.61365275148519 3.75653257121956 4.57300327330031 3.77342763863234 4.07354198053453 3.88853239274836 3.82144754021386 0.187185941850601 0.190011993127510 0.196333765470998 0.198018691613593 0.201050119818627 0.188278069136941 0.195575897144787 0.191363069231141 0.192942555168914 0.195628106062446 0.19484882424144 0.193819897588393 0.187841562889278 0.189039062685190 0.192136227060479 0.185824011684616 0.192134171152884 0.191831180970235 0.187378809621036 3 3 - 3401243 3402229 3401800.636 3401083 3402677 - gene protein_coding_gene FALSE TRUE AT3G10870.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G58310.1); similar to Os12g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065997.1); similar to Os11g0118000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065594.1); similar to pheophorbidase [Raphanus sativus] (GB:BAE54383.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.0587523396171363 0.557198004461855 0.588670075541724 1 -0.455263484180914 7.21183727751995 0.0587523396171363 0.111277946881207
AT1G25490_at 8.91067576479879 9.04295965265399 8.7311501935903 8.76919738001103 9.00033521966644 8.9488796494788 9.23070513664851 9.24184247493194 9.29589219686354 9.17831202704395 9.40228017353956 9.47982137450028 9.32466155103113 9.28762904277273 9.50262587526222 9.40436090332094 9.07765612390456 9.14878176420322 9.05445254523772 0.111262158758551 0.106413699276578 0.113441129568924 0.113024892497080 0.102512537065336 0.115103799018068 0.105973785830943 0.111048320013116 0.111262404211545 0.110206947917069 0.108417184571034 0.103717767219847 0.110182052773495 0.108350049629643 0.108049350166390 0.103053675773200 0.112441137229259 0.105268706417704 0.114663827544482 1 1|0 +|/ 8953858 8954854 8954229.1 8951189 8955094 + gene protein_coding_gene FALSE TRUE AT1G25490.1 RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (PP2A, subunit A, alpha isoform) (PR-65 A) (AtA alpha) (Protein enhanced ethylene-response 1) (Protein ROOTS CURL IN NAPHTHYLPHTHALAMIC ACID 1) (PP2AA1) [Arabidopsis Thaliana] (GB:Q38845;GB:Q38855;GB:Q38952;GB:Q56WI3;GB:Q570B7); similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.1); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to serine/threonine protein phosphatase type 2A regulatory subunit A (GB:AAB60713.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0459484842766162 -0.556994501751218 0.588804348740566 1 -0.455374893108110 18.2368161960301 -0.0459484842766162 0.0255033091685518
AT4G30420_at 1.27060231968889 1.39620173902053 1.67872963225353 1.41776693337011 1.13429991305603 1.29550392328237 1.67432484025351 1.28020342085928 0.872333655253631 1.36073599054395 0.815001310319431 1.22935147124218 1.41022610826001 1.07484772188747 1.25176734949235 1.60565876883833 2.10896287008463 1.52129007316745 1.50159202808625 0.230979901055866 0.227724788550993 0.224657188033521 0.221127700692218 0.219008397765153 0.223469865936019 0.2203869596353 0.224128885682204 0.222543374861750 0.224778519501454 0.226653827932538 0.229099454238312 0.221469935048085 0.226125022079019 0.226757643679106 0.224511854770651 0.223887380662219 0.227140302317815 0.222884065959672 4 4|0 +|/ 14878060 14878714 14878381.625 14877075 14878920 + gene protein_coding_gene FALSE TRUE AT4G30420.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G28040.4); similar to putative MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAD33614.1); similar to Os09g0426500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063226.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.0542465025342476 0.556977865453354 0.588815326256954 1 -0.455383999068968 2.70446680711774 0.0542465025342476 0.0891181399381599
AT4G09670_at 9.60368191777835 9.7454214346531 9.4826520342559 9.74239592923105 10.1632171489768 9.9911724282253 9.77816031383126 9.8221488953203 9.60837874647365 9.63265689285552 9.5974249420521 9.60098262009601 9.71251216952566 9.65460943393466 9.5558616338089 9.87256109232624 9.60794218954842 9.58471432093193 9.73021502224338 0.119043705895165 0.115405904265727 0.123155051842536 0.123391764217565 0.115296158492352 0.120132837018112 0.115239371211652 0.114259384781306 0.127571363036627 0.111562789992621 0.117920951742645 0.116385475717788 0.111562789992621 0.113498589956827 0.117940421561557 0.116059871582010 0.115970734397563 0.115470589578653 0.113846796925288 4 4 - 6107465 6107919 6107687.545 6107147 6109119 - gene protein_coding_gene FALSE TRUE AT4G09670.1 oxidoreductase family protein Identical to Probable oxidoreductase At4g09670 (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9SZ83;GB:Q56ZU4;GB:Q94AR5); similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G34200.1); similar to AX110P [Daucus carota] (GB:BAA03455.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) 0.0493743705984908 0.556308900601464 0.589256834390531 1 -0.455749948378142 19.4438110648518 0.0493743705984908 0.0597205007570275
AT2G15340_at 1.45034396175676 1.57293785969372 1.64230433381109 1.89560493467506 1.27975313123653 1.62061840993914 1.78381209561957 1.75476607407034 1.36412844715985 1.35425572012078 1.19469704193813 1.38040034639838 1.77672324545818 1.25057332561435 0.836768023970322 1.48646509598986 1.54366956625671 1.67408616999007 1.67939420624614 0.198388296821431 0.196119986981495 0.199067736408906 0.198952912236110 0.194548782827624 0.196793716248244 0.196186932986441 0.198902391527346 0.197168368065945 0.208005198704282 0.199530903361094 0.202044229417833 0.194489946399048 0.201170469786727 0.208981724322930 0.196477645946664 0.212778012975367 0.197595830122814 0.200353731772927 2 2 + 6684422 6684701 6684551.636 6684369 6684901 + gene protein_coding_gene FALSE TRUE AT2G15340.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G15770.1); similar to keratin [Blastopirellula marina DSM 3645] (GB:ZP_01090309.1) -0.0519490339632816 -0.55611086822596 0.589387566668737 1 -0.455858200295694 3.05444208833074 -0.0519490339632816 0.0766581898573366
AT3G56590_at 5.33568850877223 5.25060066787284 5.06949026408493 5.15443894389192 5.36219867900703 5.05313341685367 5.03754295636098 4.61763383846327 5.31765654357596 5.94167145233188 5.88371362985561 5.61693756932098 5.42753901905635 5.37635702823608 5.69096028251308 5.84034734614427 5.75585823997789 5.20529608119369 5.50901342530584 0.205284961336022 0.192568830536163 0.20649751106488 0.201802253927970 0.213328017806655 0.204812685461706 0.205934249501590 0.196686016570634 0.209292668783747 0.204524835994842 0.196646187289477 0.201920962579123 0.200217014361741 0.209014312139184 0.193394912390422 0.202118246466141 0.209193744434884 0.204533743845033 0.202967378369723 3 3 + 20978064 20978600 20978344.545 20975836 20978998 + gene protein_coding_gene FALSE TRUE AT3G56590.1 hydroxyproline-rich glycoprotein family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G10810.1); similar to putative RING zinc finger protein-related [Medicago truncatula] (GB:ABD32886.1); contains domain PRICHEXTENSN (PR01217) 0.0548139211123705 0.556034792101511 0.589437792849898 1 -0.455899776717604 10.7046275543843 0.0548139211123705 0.0925965720261887
AT1G08920_at 6.2784909879633 6.92031025878993 5.75164460398884 5.79177195258793 7.05806892692827 6.36914013483714 5.91136360303954 6.00858680289106 4.07669128129104 4.36404389497806 3.92444774342944 4.53302972289071 4.99416492484926 4.67392223003564 3.67474605873537 4.2676694855363 4.87340141513937 4.18783523274902 4.19376622983744 0.242115137747426 0.241701348769846 0.244384007943422 0.239892129710049 0.239892129710049 0.249283239647579 0.242454503929374 0.239892129710049 0.242059341731873 0.240062378379654 0.248700718693901 0.243646685991528 0.243306539577572 0.239892129710049 0.243708365943962 0.239892129710049 0.242460167010114 0.243530613141049 0.249625206409346 1 1|0 +|/ 2869094 2870085 2869775.714 2867274 2870659 + gene protein_coding_gene FALSE TRUE AT1G08920.1|AT1G08920.2|AT1G08920.3 sugar transporter, putative|carbohydrate transporter/ sugar porter Identical to Sugar transporter ERD6-like 3 (Sugar transporter-like protein 2) (SUGTL2) [Arabidopsis Thaliana] (GB:Q94KE0;GB:O04037;GB:Q9SCW9); similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|Identical to Sugar transporter ERD6-like 3 (Sugar transporter-like protein 2) (SUGTL2) [Arabidopsis Thaliana] (GB:Q94KE0;GB:O04037;GB:Q9SCW9); similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.0713100621915234 0.55602365679653 0.589445144673451 1 -0.455905861832903 10.5624984440647 0.0713100621915234 0.163956614515207
AT3G11930_at 11.1013145310836 11.2602193206487 11.4431164580924 11.4939549243837 11.3132252530878 11.3892056916415 11.1400026870393 11.2418859120061 11.1561192972923 11.0469312427812 10.9194568190534 11.1222377446136 10.7253999878476 10.6321571801239 10.9909605821317 10.8549275538205 10.7764213791331 10.7448239766934 10.7263025634807 0.0975519026312575 0.095635301685926 0.0984260713219583 0.0967236485391413 0.101667150436650 0.093118441175979 0.0965074513679736 0.0976689437127046 0.104455519488651 0.0960998150838925 0.0967206506810318 0.0948262427334651 0.0938348897823153 0.0952049868009812 0.0937388523609523 0.094882365448779 0.0966907603700822 0.0986184223991747 0.0953516041995221 3 3|0 +|/ 3776423 3777325 3776907.2 3776243 3777700 + gene protein_coding_gene FALSE TRUE AT3G11930.1|AT3G11930.2|AT3G11930.3|AT3G11930.4 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G58450.1); similar to putative stress-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87267.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.0466835437580313 0.555978331575047 0.589475070084996 1 -0.455930629544899 22.2089901909705 0.0466835437580313 0.0362955085856731
AT1G53080_at 1.44456392686569 1.07175956771355 1.14635535635831 0.850685424500878 1.38419213236835 1.47361671629717 1.59794920461667 1.49710952133713 1.37030646582659 1.22835007140917 1.32163710836064 1.29868580325221 1.36338630258431 1.21034332242803 1.67257759495762 1.41056878818362 1.66761621945108 1.61096694542813 1.48832345945610 0.226793444642379 0.22940777028833 0.230650924643703 0.238545445882975 0.231025984823385 0.22632062336121 0.225105696619289 0.225996195371880 0.232402594947283 0.226804771442156 0.227232360398998 0.235073488140125 0.233083403756121 0.230701122138036 0.226510385573806 0.223808134495664 0.238088560118356 0.237215395777482 0.225077549880091 1 1 + 19785308 19785832 19785536.455 19785036 19785887 + gene protein_coding_gene FALSE TRUE AT1G53080.1 legume lectin family protein similar to legume lectin family protein [Arabidopsis thaliana] (TAIR:AT5G03350.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.0534935263676677 -0.555941203209347 0.58949958422144 1 -0.455950916716131 2.71167869432955 -0.0534935263676677 0.0855823458621486
AT2G23970_at 1.90347870096784 1.54166867275551 2.6118452496365 2.25434119804175 1.84721985325662 1.94491170692943 1.63814407616820 1.84880222617604 2.23653676356712 2.46592496191984 1.98170471291784 1.61855837983541 2.09523890641176 1.84933395764487 1.81280530277014 1.92966861167115 2.00394337982541 2.15062873889591 2.04923130727559 0.195955341063464 0.196562722269636 0.200796978071642 0.197769119323746 0.19275589603384 0.198706094438368 0.198527444410475 0.19693413384865 0.199201607471952 0.200417814386750 0.19275589603384 0.201139405907499 0.197226405057224 0.196773115542425 0.197616157130280 0.19275589603384 0.205206655500350 0.201847531063623 0.199313743742478 2 2|0 +|/ 10207016 10208116 10207714 10206778 10208161 + gene protein_coding_gene FALSE TRUE AT2G23970.1 defense-related protein, putative similar to glutamine amidotransferase class-I domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G30550.1); similar to defense-related protein [Brassica carinata] (GB:AAK50344.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.05561349372078 0.555914133266238 0.589517457586985 1 -0.455965707099039 4.03920125699186 0.05561349372078 0.096761577087745
AT2G45150_at 2.5793784184328 2.97201295617604 2.78636007140568 2.72177880418316 3.72270122047135 3.31325625045054 4.40609781850258 3.42699370889736 3.27608814055358 3.50658670491277 3.23414699197784 3.41607089470876 3.60985420911916 3.34588608031161 3.02435896719366 3.42871899620277 3.13158306652324 3.75405142110150 3.17114013968439 0.226169088028494 0.230876621938536 0.233832926964875 0.241190071199807 0.226749079005029 0.227633292420043 0.224655364346990 0.228150779249233 0.232951703290231 0.224655364346990 0.227795169547253 0.224655364346990 0.235562445649977 0.239464042646089 0.229049693902225 0.226853626963932 0.238030690114197 0.225060130388172 0.232313975131229 2 2|0 +|/ 18621462 18622363 18621858.4 18620380 18622792 + gene protein_coding_gene FALSE TRUE AT2G45150.1|AT2G45150.2|AT2G45150.3 phosphatidate cytidylyltransferase family protein similar to phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G60620.1); similar to putative phosphatidate cytidylyltransferase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08021.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374)|similar to phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G60620.1); similar to putative phosphatidate cytidylyltransferase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08021.1); similar to Os02g0126900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045756.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) -0.0799755694328873 -0.555752341594042 0.589624289095968 1 -0.456054092154571 6.58408348445289 -0.0799755694328873 0.196142224945346
AT1G76740_at 1.91281869339839 1.53561766079982 1.71422089827505 1.58674588537333 1.36857596489065 1.65827924912137 1.65479201395860 1.33309720170502 1.88186144238823 1.92733061427611 1.95031501270816 1.9491613822259 2.15312519202647 2.10144196229095 2.27333516211268 1.78938236711646 1.92994575947574 2.43692390261722 1.98905739480297 0.211050888834095 0.210626246210275 0.206579812275755 0.198884550835234 0.209246371400058 0.210367894071046 0.207690917331062 0.205873426684584 0.203183885817489 0.210143521977840 0.213136858141495 0.209000712561146 0.206104761366933 0.198454893611986 0.198898088936670 0.200765412414467 0.214506212679605 0.209282034212690 0.212722162169897 1 1 + 28814492 28815336 28814960.818 28810129 28815451 + gene protein_coding_gene FALSE TRUE AT1G76740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76840.1); similar to cell wall-anchored protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (GB:YP_300225.1); similar to Subtilisin-like serine protease [Pediococcus pentosaceus ATCC 25745] (GB:YP_803612.1); contains domain SAP domain (SSF68906) 0.0565390661827847 0.555087880939938 0.590063141328248 1 -0.456416826076187 3.59837027580401 0.0565390661827847 0.101785869686833
AT3G27290_at 1.58946005589511 1.95765156111802 1.87270359209835 1.79509187947656 1.70619309548883 1.68336755246642 2.04675666640539 1.67510840052350 1.76997996472392 1.88244202375214 1.60546924990757 1.83859973847761 2.0764291939011 1.75651806303691 1.65187241931853 1.71039183343589 1.75418698328168 1.87107277483860 1.86516954618557 0.211274326289372 0.210603626431157 0.209045769192295 0.215889518905712 0.20984528072233 0.208408873105373 0.206857177131029 0.210599161213850 0.214882444463785 0.211148692469078 0.206857177131029 0.210573223007037 0.208873303343962 0.213267581077296 0.208106302374301 0.210419001938459 0.219057630986898 0.206857177131029 0.215827848194218 3 3|0 -|/ 10081304 10081920 10081607 10080797 10082770 - gene protein_coding_gene FALSE TRUE AT3G27290.1 F-box family protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G26000.1); similar to H0811E11.8 [Oryza sativa (indica cultivar-group)] (GB:CAC09492.2); similar to Os04g0485800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053135.1); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) -0.0545173936493875 -0.554937848531653 0.590162256102671 1 -0.456498673363859 3.60192395555666 -0.0545173936493875 0.0916098500452381
AT1G80810_at 5.10459624852084 4.67177144346281 5.1554386789249 4.27920898858314 5.09471384874944 4.7042959090813 4.70641607602242 4.44303899650384 5.51470841779449 5.56397518013615 5.57236218855359 5.70219259008084 5.43457915134229 5.88912375131187 5.05271400297813 5.69247158487074 5.54786533912153 4.7783611880341 5.06318791795592 0.169113444641189 0.168802198093853 0.169231133594682 0.171941212095508 0.17814430650467 0.187562550391605 0.173449570189124 0.172727639501574 0.185051540492753 0.176602039181303 0.16934705459739 0.172782313595135 0.17028137992812 0.167935501504145 0.167517281873329 0.178324936007141 0.182045448220083 0.175118381494170 0.166829236032274 1 0|1 /|+ 30373137 30373713 30373366 30370179 30373790 + gene protein_coding_gene FALSE TRUE AT1G80810.1|AT1G80810.2 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15940.1); similar to Tudor [Medicago truncatula] (GB:ABE86625.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0775217755575003 0.554820195420312 0.59023998651753 1 -0.456562842187638 10.1896013053138 0.0775217755575003 0.187739142710748
AT4G03050_at 2.28971370134114 2.42803427742929 2.45734663561627 2.59280830732446 2.35352448736412 2.57023300669858 2.32673398722363 2.37309610826789 2.41934601324823 2.47232986272134 2.39947236884571 2.53071586412862 2.65718173721080 2.54761316687164 2.16523957094828 2.40371914183075 2.91597291507993 2.89968081123753 2.93176041224476 0.191237496951774 0.200879249786918 0.20673906435487 0.202352927930531 0.19113568223083 0.198214895526638 0.189550772591830 0.201463274319769 0.194940573399136 0.190768620326138 0.186804101568433 0.190693960014643 0.193828498426629 0.193696821258941 0.190603446425675 0.198327701069795 0.201502027279896 0.193898053639004 0.189809128335148 4 4|0 +|/ 1345199 1346103 1345766.8 1344182 1346501 + gene protein_coding_gene FALSE TRUE AT4G03050.1|AT4G03050.2 AOP3 (2-oxoglutarate?dependent dioxygenase 3); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors encodes a 2-oxoglutarate-dependent dioxygenase that catalyzes the conversion of methylsulfinylalkyl glucosinolates to hydroxyalkyl glucosinolates. involved in glucosinolate biosynthesis and secondary metabolism. similar to AOP2 (ALKENYL HYDROXALKYL PRODUCING 2), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03060.1); similar to 2-oxoglutarate-dependent dioxygenase [Brassica oleracea] (GB:AAK95851.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.0481104708165428 0.554813873267074 0.590244163555743 1 -0.456566289971474 5.01031708545347 0.0481104708165428 0.0509246906503633
AT3G19520_at 7.56735700475707 7.71764959575906 7.92617094665853 7.50340360448258 8.10762018323014 7.67260831171985 7.16501914062063 7.14027193126743 7.10665165136894 7.1239799035569 6.73649534514013 6.20388769471455 6.51005661004494 6.67981124869936 6.6616866830674 6.80626406504665 7.00440952144187 6.50454943633601 7.24602185320911 0.215630184973206 0.218030105318401 0.209457039714727 0.210173619497260 0.214038191275984 0.222112526410853 0.215591693703185 0.21990982015855 0.222118380606557 0.215583313962099 0.215467933195815 0.213231986091864 0.209034948603256 0.221550787202153 0.211817723383828 0.208107664302269 0.215526220441367 0.212607989890005 0.227731475328359 3 3|0 +|/ 6773396 6774183 6773864.6 6772693 6774449 + gene protein_coding_gene FALSE TRUE AT3G19520.1 similar to ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G28500.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) -0.0578065251976132 -0.55438562185498 0.590527144907207 1 -0.45679975065157 14.4986523622818 -0.0578065251976132 0.108234291757847
AT1G49800_at 1.93402708671434 1.72463167246496 2.29833869871213 1.96807855514873 1.74083646993576 1.82741102684318 2.00059543750456 1.83200887966988 1.89212619560756 1.95140293387563 2.01172189791414 1.78889979158148 1.87256544408032 1.6802426973236 1.69612157142719 1.78575435561674 1.73914395870614 1.88758720094696 1.52806488604998 0.180371153854431 0.187056759660570 0.194925292555028 0.189007247093927 0.182317977133186 0.197282520399177 0.187795299973138 0.187658452038009 0.194100988873051 0.185650356501485 0.185905481049941 0.183671917291153 0.18190751349145 0.180371153854431 0.180371153854431 0.181801507372746 0.190532560646281 0.183854073676172 0.185177633903838 1 1 - 18442220 18442499 18442374 18442033 18442607 - gene protein_coding_gene FALSE TRUE AT1G49800.1 unknown protein 0.0515368473800125 0.554287825254085 0.590591777269931 1 -0.456853040544906 3.71488395497951 0.0515368473800125 0.0752011193711817
AT1G78340_at 2.00457023087839 1.44978749222803 1.90711356240121 1.94467024222481 1.79848792614095 1.95245316266429 1.76353922454903 1.94310018260246 2.09598743595981 2.70121316484057 2.59079326608763 2.42103474507713 2.46098908677620 1.88869279381406 2.25020022624786 2.07780044868111 2.36288485912667 2.46861346385709 2.1373681814516 0.220697746092363 0.207684640466218 0.211707022791552 0.210533315808532 0.204569765511290 0.212328313316359 0.213008296458834 0.206741634559818 0.211900485699260 0.204704543260135 0.216656831911719 0.214547576699987 0.212366500302298 0.213224476046261 0.214039599496120 0.209631211149962 0.205462764281103 0.21001005172752 0.208100663049316 1 1|0 -|/ 29477964 29478482 29478128.6 29477785 29478756 - gene protein_coding_gene FALSE TRUE AT1G78340.1 ATGSTU22 (Arabidopsis thaliana Glutathione S-transferase (class tau) 22); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G78380.1); similar to glutathione transferase [Carica papaya] (GB:CAA04391.1); similar to 2,4-D inducible glutathione S-transferase [Glycine max] (GB:AAC18566.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.0570175622922408 0.554169962790477 0.590669675815819 1 -0.456917252678853 4.15878977227404 0.0570175622922408 0.104571683008706
AT3G48070_at 7.89872349003139 7.88908337878528 8.0529010624749 7.83095718754453 8.52065417277455 7.88005508672183 8.08009342001448 8.1064811217999 7.25839182926586 7.31484419584267 7.18173768975331 7.06485352567658 7.23046604052392 7.5716333100802 7.25293019139073 7.54492366068423 7.33172879389435 7.43557391344366 7.28106148056324 0.189704535142181 0.181624817892154 0.188839476741927 0.178297972383360 0.193295453139350 0.196137083157323 0.183214640808749 0.197564918640802 0.198635155472856 0.176692818824276 0.180390834773780 0.180633441880934 0.184009091937886 0.195467858231519 0.188715719319729 0.174156861745599 0.19585143179255 0.180954339897590 0.179038693011477 3 3 + 17762450 17762841 17762693.273 17761696 17763746 + gene protein_coding_gene FALSE TRUE AT3G48070.1|AT3G48070.2 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G62910.1); similar to hypothetical protein LES1_20t00015 [Lycopersicon esculentum] (GB:ABI34275.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0597557900890715 0.553986649453641 0.59079084338206 1 -0.457017097281767 15.3381169779708 0.0597557900890715 0.117424381973592
AT1G09090_at 0.531863011455335 0.514837247633638 0.678097193918455 0.303843904905526 0.808364113382422 0.623307953766981 0.712359535370594 0.577876941970334 1.05182321159637 0.631789651427055 0.767372578665701 1.01583577762886 1.00257757725374 0.816253002039347 0.468291859487418 0.91299610637324 0.826227653153948 0.878107984947635 0.572005470150062 0.220206714033613 0.213261353896029 0.219813457687112 0.213261353896029 0.216938380444621 0.217207310968332 0.223370273441543 0.220719047482172 0.220247187835792 0.216247399848075 0.223809264534981 0.215290681160008 0.220206058152418 0.215108266305896 0.218146192574991 0.215961256553153 0.215703613607946 0.219668991716095 0.213261353896029 1 1 + 2935831 2936432 2936138.636 2932741 2936588 + gene protein_coding_gene FALSE TRUE AT1G09090.1|AT1G09090.2 ATRBOHB (RESPIRATORY BURST OXIDASE HOMOLOG B); FAD binding / calcium ion binding / iron ion binding / oxidoreductase similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to ATRBOHA (RESPIRATORY BURST OXIDASE HOMOLOG A), FAD binding / calcium ion binding / iron ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07390.1); similar to RHD2 (ROOT HAIR DEFECTIVE 2) [Arabidopsis thaliana] (TAIR:AT5G51060.1); similar to respiratory burst oxidase protein D, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94089.2); similar to respiratory burst oxidase 2 [Medicago truncatula] (GB:AAW78864.1); similar to respiratory burst oxidase homolog [Solanum tuberosum] (GB:BAB70751.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623)|similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to ATRBOHA (RESPIRATORY BURST OXIDASE HOMOLOG A), FAD binding / calcium ion binding / iron ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07390.1); similar to RHD2 (ROOT HAIR DEFECTIVE 2) [Arabidopsis thaliana] (TAIR:AT5G51060.1); similar to respiratory burst oxidase protein D, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94089.2); similar to respiratory burst oxidase 2 [Medicago truncatula] (GB:AAW78864.1); similar to respiratory burst oxidase homolog [Solanum tuberosum] (GB:BAB70751.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623) 0.0516270735525551 0.553901344427606 0.590847233273592 1 -0.457063549458661 1.38773403538453 0.0516270735525551 0.0759642466230825
AT3G13980_at 3.34701674950573 4.08871998699951 2.6085404265493 2.78982773278135 2.64190111239561 3.24850538799998 3.31937715404408 3.37523220361459 3.04789793075749 3.39856888660570 4.60614176125577 6.16100893746936 5.51237419521583 5.14481330749836 4.53951269135879 4.59215103006501 3.73353172499722 5.08892681452957 5.75511217520904 0.245846059694264 0.252318436126522 0.247874732275819 0.245555947086192 0.246169358951362 0.257967011354232 0.247549915069784 0.251191150994353 0.26882466057927 0.248685096774583 0.24616535500925 0.254425479889173 0.251912835481468 0.248703162588124 0.250376796317605 0.250314696723567 0.252558384241855 0.245764881175617 0.257957117986089 3 3 - 4619205 4619756 4619513.818 4619045 4620269 - gene protein_coding_gene FALSE TRUE AT3G13980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54200.1); similar to Os03g0175800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049135.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM01132.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47525.1) 0.0723608508326224 0.553848983179991 0.590881847466508 1 -0.457092059027450 7.67214037189768 0.0723608508326224 0.169034398519523
AT3G43970_at 2.04448339258286 1.98312214178813 2.07786339782698 2.26162172665785 2.14533464330733 2.65215951091650 2.27560149412212 2.07344239487892 2.3815811399444 2.24665840008176 1.99795594247154 2.11511524518154 2.62664594207961 1.99645773848269 2.22974083949275 2.18369379964722 2.42315464618801 2.57588929593804 2.41124228182948 0.184146255970438 0.184266516553267 0.191935251667641 0.192911575217496 0.188254565044507 0.187028089304222 0.186355474152444 0.187835999748549 0.190045607180019 0.192217557539979 0.189321696762557 0.184146255970438 0.185732527976815 0.190756951856631 0.186214801640959 0.184146255970438 0.185382628180707 0.193719375770573 0.195839082215679 3 3|0 -|/ 15788398 15788909 15788721.778 15788395 15788935 - gene protein_coding_gene FALSE TRUE AT3G43970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53240.1) 0.0560851022003929 0.553776134536228 0.590930006935108 1 -0.457131719321882 4.49674139866195 0.0560851022003929 0.100203294073722
AT3G03150_at 11.7714984584260 11.8724596464617 11.6175918454898 11.6169221832334 12.2171725523607 11.9648347370927 11.9053929735938 11.8591833826817 12.0490487964248 12.1878597934035 12.3139952015761 11.9454979536225 12.0230978927663 11.8599967277911 12.0701207140010 11.6790987392481 11.8291899957662 12.0589286982566 11.9723890645880 0.0629401576488426 0.0621766393953376 0.064064721662233 0.0642628550217497 0.063250475001762 0.0647176124609893 0.063562709606527 0.0644703836180778 0.0631983697710788 0.0625899186803986 0.0621766393953376 0.0621766393953376 0.0622955001841453 0.0671288232094245 0.0634542775124125 0.0621766393953376 0.0641588238922318 0.0636001884426443 0.0629080336745509 3 3|0 -|/ 727744 729318 728135 727561 729511 - gene protein_coding_gene FALSE TRUE AT3G03150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17165.1); similar to seed specific protein Bn15D1B [Brassica napus] (GB:AAP37967.1) -0.0476392150868179 -0.553688956043521 0.590987642427409 1 -0.457179174626378 23.8742602850094 -0.0476392150868179 0.0477089171079926
AT2G33370_at 9.0846953756371 9.26478002170868 8.51263318177087 8.63293389225208 9.30533310629156 8.74015732832286 8.92729741163077 8.78086913247901 8.44745179128073 8.42095125169442 8.92784827942376 9.11330566326531 8.5268765637886 8.50231907143022 9.28214949445815 8.39816741291007 8.29176706855942 8.33198456486096 8.84271818243708 0.137237976125204 0.134357459591979 0.129872794590278 0.135311589162225 0.133466790178227 0.142307240704173 0.127472176535697 0.13222574911645 0.148163465864908 0.131184292978692 0.127753952850198 0.130308513405690 0.126820650628021 0.128956451308314 0.133269840157764 0.130805536235776 0.137434412704069 0.138160584491585 0.129379975180218 2 2 - 14150826 14151329 14151172.545 14150630 14151797 - gene protein_coding_gene FALSE TRUE AT2G33370.1 60S ribosomal protein L23 (RPL23B) Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to EMB2171 (EMBRYO DEFECTIVE 2171), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04400.1); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G04480.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) -0.0576087925857771 -0.553442846163774 0.591150366667286 1 -0.457313105725297 17.5271754345822 -0.0576087925857771 0.107762855463241
AT3G15660_at 8.82869466014278 8.62366649600877 8.73149828020726 8.5380043799165 8.87326952091567 8.57765051808583 8.64707557914484 8.58583710189001 8.47367456587287 8.25477771043161 8.59774913875953 8.42284083333159 8.54881697111018 8.55918572276396 8.62188300659532 8.46580723729844 7.9481162717937 8.1960649226648 8.25297235060824 0.119758339922110 0.119380649576236 0.120567516550284 0.120974337799392 0.130293099361044 0.126781160974775 0.124807499954567 0.117027938267461 0.133101616631976 0.129090800383710 0.120413262342495 0.120770472050666 0.126569333366660 0.119486645604796 0.123924732282926 0.117003505610199 0.152949225477883 0.124807406412335 0.122150952585774 3 3|0 -|/ 5308288 5309366 5308734 5307951 5309588 - gene protein_coding_gene FALSE TRUE AT3G15660.1|AT3G15660.2 glutaredoxin family protein|electron carrier/ protein disulfide oxidoreductase Identical to Monothiol glutaredoxin-S15 (AtGrxS15) (GRXS15) [Arabidopsis Thaliana] (GB:Q8LBK6;GB:Q9LW13); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G04950.1); similar to glutaredoxin [Arachis hypogaea] (GB:ABE68717.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) 0.050851843110084 0.553377192785226 0.591193779695203 1 -0.457348824318734 17.0493118447109 0.050851843110084 0.0714816703247452
AT2G36230_at 4.58881743452498 4.03859955134696 3.44172300616314 3.35524645361795 3.75387360353811 4.12657391607667 4.62739524679349 4.28575897752591 4.20011384444580 3.86879416649998 4.68002797814868 5.1011714506331 4.51668750017373 5.28103223545583 5.43481976936094 4.47172623387772 4.39617154133524 4.25086547416322 4.45896322345906 0.212945358141779 0.208630570351764 0.224967821563027 0.226726446135562 0.208630570351764 0.213983377250394 0.214553907401668 0.221383362213839 0.224827275192634 0.236955694256963 0.210849419843111 0.208630570351764 0.210502547025341 0.208630570351764 0.211000684739737 0.209455579075884 0.213270487782374 0.231405852310306 0.216539088187468 2 2|0 -|/ 15200964 15202146 15201474.222 15200773 15202617 - gene protein_coding_gene FALSE TRUE AT2G36230.1 APG10 (ALBINO AND PALE GREEN 10); 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase Encodes a BBMII isomerase involved in histidine biosynthesis. Identical to 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplast precursor (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) (5-proFAR isomerase) (BBM II) (HIS6) [Arabidopsis Thaliana] (GB:O82782); similar to Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (ISS) [Ostreococcus tauri] (GB:CAL54280.1); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Histidine biosynthesis; (InterPro:IPR006062); contains InterPro domain Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic; (InterPro:IPR011858); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0625914314701286 -0.553332946549065 0.591223038282675 1 -0.457372894148202 8.49850844921265 -0.0625914314701286 0.130175621861469
AT4G13340_at 3.58798937103358 4.42888269401371 4.10068899684935 4.76949548329652 3.29489227490165 4.55394988689091 3.39114617560988 4.27597448420239 6.64448875738983 5.65249651953009 6.6655369207578 4.93141182019655 5.78732146339103 6.14455659704236 5.40988099516925 5.10857356114462 4.50390728905973 5.70620024619854 5.78249491022299 0.230184461096906 0.228934417166994 0.234147369332254 0.233032073895841 0.233960331749335 0.238515301411046 0.24130474991642 0.232278595621456 0.238461827945650 0.230192317196566 0.230055343617040 0.229981448980533 0.228742146193699 0.230685705277664 0.228742146193699 0.228742146193699 0.250484154133375 0.235061896418889 0.234260868903926 4 4 + 7760350 7760836 7760573.091 7758606 7761053 + gene protein_coding_gene FALSE TRUE AT4G13340.1 leucine-rich repeat family protein / extensin family protein similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G24480.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G18670.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); similar to extensin-like protein [Zea mays] (GB:AAD55980.2); similar to extensin-like protein [Lycopersicon esculentum] (GB:AAD55979.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.117780652412300 -0.553099250223247 0.591377586632021 1 -0.457499994248728 9.8297109245169 -0.117780652412300 0.3247969533345
AT1G61750_at 0.240199049265443 0.400382179362356 0.337629843427778 0.44059230606758 0.532730194559445 0.48425681144439 0.61718203367673 0.443507180385051 0.51723058166855 0.590175263424559 0.811857365006913 0.356923505480079 0.871651260031547 0.718452878311001 0.66709934554005 0.337295253590348 0.571778825700704 1.05081411543567 0.698772134923008 0.188205443273847 0.191239614992667 0.200902330161947 0.188507356995319 0.188205443273847 0.191153812412056 0.191141836767064 0.196621432040365 0.198798195364947 0.192624860099038 0.188217195746934 0.189415072172780 0.198776263684742 0.192112826034717 0.192410228614504 0.199784248941084 0.196696806033517 0.195184181908404 0.188205443273847 1 1|0 -|/ 22808739 22809491 22809255.1 22808660 22809983 - gene protein_coding_gene FALSE TRUE AT1G61750.1 similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G63600.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) 0.0473297100837018 0.553073431119087 0.591394662656248 1 -0.457514033349463 1.07470664742814 0.0473297100837018 0.0453827491459083
AT1G36030_at 0.919576294850664 1.00409730353919 0.741813002006031 1.10409208162517 0.802731921475346 1.18733011119765 0.7462253906319 0.929246848653062 0.898687234279328 1.15673483023017 0.788975776796005 1.14024187512835 1.36609099138386 1.32287929454988 1.15337988119608 0.817916056755272 1.57655688380985 0.829220599104834 1.16222008979558 0.164628069359018 0.166713639553087 0.171012170280624 0.170316533970246 0.167540805695115 0.165564057554124 0.171843510477435 0.166294435804688 0.169172153015525 0.172683186248284 0.169841119134736 0.167601270919892 0.169743549730414 0.166947124400420 0.172151290465517 0.168324940262666 0.172318824048136 0.172076281952852 0.169058902799727 1 1 + 13437800 13438007 13437889.545 13437798 13438040 + gene protein_coding_gene FALSE TRUE AT1G36030.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G30430.1); contains domain no description (G3D.1.20.58.140); contains domain F-box domain (SSF81383) 0.0555328023647514 0.55293236206091 0.591487966308695 1 -0.457590728553966 2.02786664655181 0.0555328023647514 0.0978642950169963
AT3G02750_at 8.30497394285776 8.31149097403325 7.95502750260317 8.10220879153127 8.42589303413638 8.58653398544124 8.70653396361931 9.1079808647167 8.4937843294956 8.27987988932985 9.09424096947642 8.95312022069842 9.07542413865341 8.94590996101932 8.40339017268387 8.9507975211724 8.86978772187661 8.48835469145142 8.43622452589923 0.138269973533787 0.139107600583544 0.139486899120777 0.143834648561993 0.134587178771970 0.139446726098437 0.137023995676762 0.137239540546417 0.148740070561179 0.135847652350786 0.136186993357725 0.136571041039017 0.133017314751577 0.139864753675366 0.137038436344002 0.135618740041575 0.14642772529038 0.142928368248461 0.138251741431559 3 3 - 593762 594258 594005.636 593214 596527 - gene protein_coding_gene FALSE TRUE AT3G02750.1|AT3G02750.2|AT3G02750.3 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT5G36250.1); similar to protein phosphatase 2c [Medicago sativa] (GB:AAV73837.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0520014092543435 0.552351735256988 0.591872076621665 1 -0.457906204811413 17.0630425938027 0.0520014092543435 0.0790520699829967
AT4G12800_at 13.3944846995905 13.3751093871071 13.3145558548025 13.4346283919303 13.5188947093263 13.1261132324441 13.7076637706615 13.6994981759884 14.1860008900943 13.9539344603779 14.4272000320742 14.4157026399703 14.2924790080921 14.3612603021869 14.3661127402363 14.3553902404511 14.0009473715583 14.4478191951541 13.9692699085221 0.0576077975182473 0.0600897306798592 0.0652208357973646 0.0651131425343113 0.0587199360787771 0.0682145891813242 0.0585176042552339 0.0585939916251823 0.062000937579501 0.0612362614510691 0.0574629803232813 0.0576186437447601 0.0605374503014191 0.0581791569081628 0.0574629803232813 0.0574629803232813 0.0615176243937493 0.0581045206143561 0.060413129186675 4 4 + 7521601 7522465 7522189.182 7521319 7522667 + gene protein_coding_gene FALSE TRUE AT4G12800.1 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. Identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V) (PSAL) [Arabidopsis Thaliana] (GB:Q9SUI4;GB:Q9ST32;GB:Q9SU06); similar to photosystem I subunit XI [Nicotiana attenuata] (GB:AAO85557.1); contains InterPro domain Photosystem I reaction centre, subunit XI PsaL; (InterPro:IPR003757) 0.0506606135031324 0.551828981193386 0.592218013507374 1 -0.458189969711384 27.6312513748381 0.0506606135031324 0.0711708807400132
AT4G31320_at 1.23404559246532 1.00335068654584 1.14063498696980 1.34497726371270 1.20962349166111 1.14923895516646 1.12295928173677 1.18575368644274 1.18787898152609 1.68764542002183 1.33932864916648 0.944170494365289 1.04312010832593 1.14037326225051 1.62965090224518 1.48073491712998 1.06345540140833 1.46928666401732 1.42957729677666 0.191655976891922 0.194428368432922 0.193243071797031 0.194101638570547 0.194349991801189 0.191655976891922 0.199612381390979 0.201981470693383 0.199348239172751 0.194210524852006 0.202994057995433 0.19424351248779 0.194616501676588 0.197449490079348 0.196479203896728 0.195144031930905 0.198463652069754 0.196957309383023 0.196003177795967 4 4 - 15194029 15194472 15194214.273 15193999 15194568 - gene protein_coding_gene FALSE TRUE AT4G31320.1 auxin-responsive protein, putative / small auxin up RNA (SAUR_C) similar to auxin-responsive protein, putative / small auxin up RNA (SAUR_D) [Arabidopsis thaliana] (TAIR:AT2G24400.1); similar to Os04g0608300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053812.1); similar to auxin-induced protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD13235.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.0483387434990223 -0.55104111798207 0.592739588867117 1 -0.458617164989214 2.52322246774017 -0.0483387434990223 0.0554221806789522
AT2G26340_at 9.13037678602331 9.14522253030571 9.20479348643816 9.14715662288765 9.30547768156975 9.31017060756968 9.22980842035462 9.4459394074376 9.8021238840133 9.58209577158968 9.80135639450151 9.69618622695786 9.5931788916226 9.82790978516514 9.75797714628544 9.9699080723049 9.46866028438255 9.78554202109227 9.56182484942445 0.0867385666917552 0.0866767509570383 0.0934039769260015 0.089047919040433 0.0865740517669961 0.0907821364954766 0.0857505705171372 0.0845384396897619 0.103133028783074 0.0858211795240722 0.0880590309306026 0.0842640437947293 0.0887018853605963 0.0882973930644096 0.0860022257676615 0.0859747520015405 0.0879269223167865 0.0899104950738779 0.0904854767756848 2 2|0 +|/ 11222498 11223531 11223190.556 11222330 11223725 + gene protein_coding_gene FALSE TRUE AT2G26340.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94264.1) 0.0464855823496113 0.55092241974695 0.592818189451774 1 -0.458681475742403 18.9330038700557 0.0464855823496113 0.0388032517126375
AT2G41760_at 6.16017225350566 6.4156362999606 5.99621588111884 6.0507346938964 6.2343135047546 6.06276971647863 5.60788975502736 5.7781188006644 6.00549251446306 6.4251243072207 6.45482757367888 6.55673895794065 6.68305076655047 5.93827945335873 6.30727913321885 6.44966667392603 6.20173735326288 6.54903327670835 6.73902216478487 0.204258937472697 0.195909424095692 0.204510196654745 0.20404138758434 0.198651806723661 0.196036815202845 0.200002006654778 0.200125713212688 0.220202755610571 0.203013556555379 0.202943721195553 0.195091985205739 0.194230454735668 0.225421963196795 0.201270236846712 0.197509849487379 0.212306847032022 0.201368294336581 0.194230454735668 2 2|0 +|/ 17430206 17431199 17430756.75 17429848 17431449 + gene protein_coding_gene FALSE TRUE AT2G41760.1 similar to PREDICTED: similar to CG8253-PA [Tribolium castaneum] (GB:XP_974547.1); similar to Os05g0387900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055427.1); contains domain UNKNOWN (PTHR13035); contains domain gb def: Expressed protein (At2g41760/T11A7.14) (PTHR13035:SF2) 0.0491255790985039 0.550609137302788 0.593025667648231 1 -0.458851149640504 12.4294595185442 0.0491255790985039 0.0615839717505178
AT4G08240_at 6.70777527889422 7.04828784349345 6.58430736093045 6.844528731963 6.91048423862568 7.19875755490708 6.70475422800398 7.17544767596116 6.13847703051894 6.3195797022678 6.28506751154178 6.48262010702628 6.27640384921415 6.83121156725953 6.36945987688039 6.46177514548648 6.16396718026658 6.31687353928911 6.30271758236483 0.206490471480721 0.191928732870889 0.209507427119737 0.198533799084841 0.201089416021616 0.204491045025118 0.208219047499583 0.194136780541460 0.213990955814156 0.198026838761201 0.195929769652247 0.191910049231319 0.190954563577367 0.196390580950141 0.200706307242186 0.190954563577367 0.214898946927629 0.201849190272964 0.211108864105632 4 4|0 +|/ 5194718 5195680 5195150.778 5194668 5196758 + gene protein_coding_gene FALSE TRUE AT4G08240.1|AT4G08240.2 similar to Os02g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047176.1); contains domain no description (G3D.4.10.850.10) 0.0601420618775133 0.550349971921504 0.593197334366505 1 -0.45899144501832 13.2227997568496 0.0601420618775133 0.120930147788463
AT4G08170_at 6.21757714923519 6.30565537601786 5.91074763417464 5.84265791465827 6.3216110723605 6.11114400994697 6.64390673008076 6.35808689853512 5.40756101450929 5.70325263511672 6.2627171668983 6.13347398095326 6.13983247419477 6.20542945503143 6.06460683948787 5.87583785257276 5.81211779216187 5.87759310431707 5.72734872347596 0.212121791877532 0.21734861021318 0.216624632814292 0.21963130560423 0.216155523522497 0.215433481223966 0.217867071907509 0.215442101630338 0.215789675825251 0.221393617402507 0.219934177355336 0.212121791877532 0.212957306491645 0.219789826810107 0.21356596939927 0.215606354231432 0.222526915579443 0.214353775728139 0.212121791877532 4 4|0 -|/ 5164068 5164767 5164383.375 5163396 5167176 - gene protein_coding_gene FALSE TRUE AT4G08170.1|AT4G08170.2 inositol 1,3,4-trisphosphate 5/6-kinase family protein Identical to Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol- triphosphate 5/6-kinase 2) (EC 2.7.1.159) (Inositol 1,3,4- trisphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (AtItpk-2) (ITPK2) [Arabidopsis Thaliana] (GB:Q9SUG3;GB:Q3EA71;GB:Q93VQ8); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G33770.2); similar to Os10g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064019.1); similar to Os03g0726200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051133.1); similar to Putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAK00417.2); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR008656)|Identical to Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol- triphosphate 5/6-kinase 2) (EC 2.7.1.159) (Inositol 1,3,4- trisphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (AtItpk-2) (ITPK2) [Arabidopsis Thaliana] (GB:Q9SUG3;GB:Q3EA71;GB:Q93VQ8); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G33770.1); similar to Os10g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064019.1); similar to Os03g0726200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051133.1); similar to Putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAK00417.2); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR008656) 0.0494819557430204 0.550153680110862 0.593327372019323 1 -0.459097663309761 12.0435092852442 0.0494819557430204 0.0643761824452838
AT3G53600_at 1.31186133097388 0.940627802362448 1.42780953607549 1.68417490892116 1.07046074558646 1.45573510352660 1.46828324046882 1.30451132430251 1.07193799340841 1.42554578109950 1.1838916970087 0.753594174695057 1.44923580502134 0.870166688617909 1.38343357299177 1.35662442187767 2.0422573475696 1.50684523367366 1.57494136651873 0.211315799989995 0.212853118646524 0.224761055313004 0.211315799989995 0.216435740419258 0.211315799989995 0.211315799989995 0.216629750119188 0.226361252052398 0.219687182770812 0.212391159066312 0.214752964785585 0.219226435195867 0.216764083198352 0.212634717680192 0.21419234984975 0.216292743750104 0.224105739040516 0.213192202385104 3 3 + 19886517 19886947 19886750 19886510 19887037 + gene protein_coding_gene FALSE TRUE AT3G53600.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein (ZAT11) [Arabidopsis thaliana] (TAIR:AT2G37430.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE93962.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.0570026098367957 0.550132727649737 0.593341253300715 1 -0.459108999090067 2.67079858137259 0.0570026098367957 0.106508799379264
AT2G45080_at 1.32388841192856 1.33069838236985 1.36396487203216 1.67823979822051 1.13284606882612 1.49398494867640 1.62174709772036 1.50332270065951 1.85065581613821 1.90753138101824 1.90212226833776 2.30084730881979 1.85931834463051 1.70413053176305 2.13599344890390 1.57912705982864 1.20418192714242 2.13012091138613 2.03213552494568 0.195538006672234 0.193998309543631 0.19622088696673 0.191156815692683 0.195737896200839 0.199906554793315 0.203737457727396 0.192167447055922 0.193619312398686 0.191156815692683 0.194040834476687 0.204062633767126 0.19270031370122 0.194707361611552 0.203492908885999 0.195473844374120 0.203950025128658 0.198382937544756 0.196503034125865 2 2 + 18598832 18599484 18599025.727 18598740 18599530 + gene protein_coding_gene FALSE TRUE AT2G45080.1 CYCP3;1 (cyclin p3;1); cyclin-dependent protein kinase similar to CYCP3,2 (cyclin p3,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT3G60550.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os04g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053503.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -0.0528912875816442 -0.550110440166482 0.593356019238421 1 -0.459121056702814 3.32213043462197 -0.0528912875816442 0.0853531028653717
AT1G66460_at 1.8301417649414 1.40505048651340 1.47046935604295 1.41637676812064 1.25926090007409 1.26541155871983 1.45578642418371 1.25384577422591 1.60339393595331 1.84388375039431 1.81135639934025 1.88329201311391 2.36765387444512 1.55666693035809 1.49886588921329 1.79001317973686 1.92298136298461 1.99696659543423 2.02689924358902 0.173125417624581 0.17177709059621 0.172584908861450 0.186793422706261 0.172496622116025 0.172730645657358 0.170833753027235 0.170726817171018 0.179738580631490 0.169853996722508 0.175800683986271 0.182587163361865 0.171812275336902 0.181592548582627 0.172323942021419 0.170135035301996 0.183945333721711 0.184723223014236 0.183659382769327 1 0|1 /|- 24793590 24794349 24793851.8 24793398 24795651 - gene protein_coding_gene FALSE TRUE AT1G66460.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G37790.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94898.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0522887897303221 -0.550041120169539 0.593401946458826 1 -0.459158556142407 3.25864296604799 -0.0522887897303221 0.0819859980322587
AT3G54560_at 4.17473589445427 3.93224486527146 3.96954815714799 4.23257884188076 2.69826743408353 3.18134651369735 4.08914869493678 4.39920206508116 4.61567282201032 4.42760160789669 4.85031278249935 6.12564378673317 4.06854457464973 4.65174155254111 6.63578173076642 4.56154901827753 3.98093087039813 4.8024287468163 4.30578449039893 0.199032386466555 0.192590879280165 0.199447346690278 0.195422270320099 0.192405151040003 0.193903283285636 0.194916116589683 0.193466968143502 0.194176474564085 0.192405151040003 0.196499713687113 0.201106821162919 0.193851407705202 0.193098101573946 0.204124655149609 0.192405151040003 0.199900072920047 0.192405151040003 0.197165006890964 3 3 + 20207522 20208381 20208132.455 20207244 20208628 + gene protein_coding_gene FALSE TRUE AT3G54560.1 histone H2A.F/Z Identical to Histone H2A variant 1 (H2A.F/Z 1) (HTA11) (H2AvAt) (H2AV) [Arabidopsis Thaliana] (GB:O23628); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT2G38810.2); similar to Os03g0162200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049049.1); similar to Os10g0418000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064611.1); similar to H2A protein [Oryza sativa] (GB:AAF07182.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0592336585834705 -0.549908863671913 0.59348957674332 1 -0.45923008944959 8.5392855281211 -0.0592336585834705 0.117050153882687
AT2G37440_at 0.937690172440341 0.96202788634761 1.24793152909917 1.27910429053898 0.513350828843661 0.841556677303459 0.58875166620343 0.84941569358593 1.10568409319226 1.03516580671225 1.13030134090530 0.606814912260701 0.59816610863967 0.854447040247571 0.978362669488855 0.98015670463153 1.17885168439378 1.15191022043114 1.37625778054361 0.201676790438578 0.1941548681671 0.201021741062172 0.202443031978186 0.202309055819279 0.194669081698808 0.204543589379425 0.194362438936597 0.208298131799011 0.199217563672633 0.196917170560030 0.200940244593935 0.198416459045107 0.198357239547884 0.195578914293185 0.194381621819153 0.199628802612941 0.204195751423377 0.197773602972967 2 2|0 +|/ 15728084 15728936 15728596.2 15725132 15729187 + gene protein_coding_gene FALSE TRUE AT2G37440.1|AT2G37440.2 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G01900.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE82106.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135)|similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G32010.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE82106.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.0507392074446175 -0.549787045567437 0.59357029676567 1 -0.459295962628884 1.95610137401575 -0.0507392074446175 0.0728535223201127
AT3G43420_at 1.22745091598719 1.48625411897332 1.70522642735917 1.83992123494090 1.17452562483795 1.36345227004267 1.71003855927936 1.19732074264318 1.85420303647328 2.02756322532029 1.55292825198029 1.45868304042288 1.77816834228221 1.63889133610845 1.75102383552867 1.42326933965185 1.38952788271136 1.48476788171804 1.48639567902328 0.189813457813686 0.185753537189900 0.183718807014312 0.184592355549553 0.189737151589875 0.190272465139306 0.183718807014312 0.184285346233674 0.191318194180351 0.195089411156846 0.188514567373229 0.186085901546354 0.191253488591252 0.198590039379428 0.185602491207634 0.189617065040991 0.18667651581686 0.185199449289873 0.189519110848289 3 3 + 15356308 15356643 15356454.111 15356303 15356667 + gene protein_coding_gene FALSE TRUE AT3G43420.1 unknown protein -0.0571072598653698 -0.549763424618774 0.593585949319975 1 -0.459308734073316 3.13754613796101 -0.0571072598653698 0.107195404191597
AT2G30240_at 0.509566369334912 0.941732656936407 1.07135203841199 1.12476673296073 0.626448010310116 0.766437114070324 1.23431939224110 0.839709965789903 0.501219167886132 0.769856790949546 0.943386458882622 0.502003306834994 0.852596291286388 0.836470228841456 0.932336980682007 0.713975751559145 1.38812741297304 0.699432647652412 1.01323238800895 0.184482216331342 0.184726256289015 0.183571306082359 0.184431446920828 0.179053518370335 0.183500848852163 0.189121510046622 0.183892900259498 0.185002581114987 0.185788774671111 0.180886161796271 0.188114023957227 0.186413182814968 0.180274125612041 0.188717421487661 0.179705123132415 0.185199601694802 0.187963008949609 0.183943857354076 2 2 - 12907021 12907559 12907303.727 12906984 12909856 - gene protein_coding_gene FALSE TRUE AT2G30240.1 ATCHX13 (cation/H+ exchanger 13); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX14 (cation/hydrogen exchanger 14), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G06970.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84887.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.0565119485434206 0.549315015297332 0.59388313122943 1 -0.459551083310346 1.69928016023388 0.0565119485434206 0.104541974113699
AT3G13110_at 8.92012323110813 9.19486178680192 8.98545554710208 9.04243935302006 9.00468187597676 8.87319301292574 9.23894132315428 9.4090946766101 8.72698668343803 9.04680230763403 9.07283525766217 9.02095067473727 9.04030297304234 9.21669468255174 8.6431658741068 9.27258268847124 9.08492337116769 9.1582338901614 9.0679486006537 0.101383952267137 0.0955374042444271 0.0988942790453893 0.100582723766058 0.0931561720296111 0.0990226706203664 0.098886045067656 0.0992524150595174 0.105121021798875 0.0989654946312176 0.0961404825709884 0.0925556162081224 0.0932754074401099 0.0967899873874832 0.105537028111742 0.0887593692554221 0.0893811035665632 0.0947608587679306 0.0984765570938584 3 3 - 4214967 4215415 4215194.727 4214624 4216309 - gene protein_coding_gene FALSE TRUE AT3G13110.1 AtSerat2;2 (SERINE ACETYLTRANSFERASE 1); serine O-acetyltransferase Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Identical to Serine acetyltransferase 3, mitochondrial precursor (EC 2.3.1.30) (AtSAT-3) (SAT-m) (AtSERAT2;2) (SAT3) [Arabidopsis Thaliana] (GB:Q39218;GB:Q42532;GB:Q43739;GB:Q43740;GB:Q7DLZ8;GB:Q7DM01); similar to AtSerat2,1 (SERINE ACETYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G55920.1); similar to mitochondrial serine acetyltransferase [Thlaspi goesingense] (GB:AAT38561.1); similar to serine acetyltransferase (GB:AAB02050.1); similar to Serine acetyltransferase 3, mitochondrial precursor (AtSAT-3) (SAT-m) (AtSERAT2;2) (GB:Q39218); contains InterPro domain Serine acetyltransferase, N-terminal; (InterPro:IPR010493); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Serine O-acetyltransferase; (InterPro:IPR005881); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.0489237472917301 -0.548981099478522 0.594104483448707 1 -0.459731431882423 18.0890773710355 -0.0489237472917301 0.0611766993060128
AT3G27390_at 7.98420205557277 7.99256472060492 7.84229393833188 7.99244840952644 8.54445936719617 8.45692961305132 7.59858131700339 7.91123137694468 7.02042509682806 7.16948064883727 7.17128295404868 6.50453748554508 6.76084759980543 6.73677366321614 7.09502656595141 6.54180979701573 7.40826558439011 7.24963292304982 7.32868221133434 0.207268559646742 0.205614060649986 0.205620409025595 0.206369147414673 0.208515292620263 0.209485770647325 0.208484858463976 0.206430982098505 0.211068573591231 0.208245324223456 0.205071543614908 0.211257699019182 0.212095365463817 0.212930210507755 0.213345046605907 0.207811264399043 0.204004325508992 0.210062973555845 0.202209565495471 3 3 - 10134709 10135367 10135077.727 10134433 10137867 - gene protein_coding_gene FALSE TRUE AT3G27390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40640.1); similar to Steroid nuclear receptor, ligand-binding [Medicago truncatula] (GB:ABD28762.1) 0.0490236918947953 0.54894037552672 0.594131482236157 1 -0.459753419898456 15.0935312117595 0.0490236918947953 0.0619206460024664
AT4G17790_at 6.87604543969423 7.60217856817065 7.35323582326472 7.31631094279179 7.97710878758766 7.57876581639678 7.75607492586593 7.44371941129852 6.70922613009836 7.49457111368536 6.42073532691907 7.15009540026597 7.17953760596602 6.85804593419213 6.60638009703529 7.31551403197765 7.75581692953878 7.26467433005394 7.81945317476735 0.212715852299535 0.214350271629803 0.219555340011148 0.208757667456073 0.210456688244481 0.213076493034041 0.213896137715859 0.215051560644265 0.228395706897329 0.205465185878167 0.229553579942231 0.208283909671621 0.207131697636623 0.219946046711754 0.222258072352261 0.210029399104266 0.212070875732156 0.211981614192053 0.205465185878167 4 4 + 9892025 9892623 9892294.091 9891064 9892820 + gene protein_coding_gene FALSE TRUE AT4G17790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71940.1); similar to hypothetical protein 23.t00026 [Brassica oleracea] (GB:ABD65614.1); contains domain UNCHARACTERIZED (PTHR12677) -0.0676913798019203 -0.548925196825064 0.594141545434903 1 -0.459761614916646 14.6928966793058 -0.0676913798019203 0.153314698468556
AT4G19650_at 1.79162858119036 1.51144016771838 1.79018818675714 1.85371352306599 2.11582882622060 1.77398771974312 1.77240033449346 1.68253856651039 1.88366671169147 2.00635724656536 1.83367514953283 1.61819903069375 2.13087858360818 1.35826676865698 1.91756426101526 1.88160075034008 1.75122188149798 1.79587822522768 1.7396542922089 0.192264454917376 0.191298629162348 0.191298629162348 0.199936151879069 0.191298629162348 0.192434679073814 0.191298629162348 0.195811185640345 0.192424117089457 0.198552792835302 0.191852666007536 0.191819564201204 0.199366778955089 0.201870116731117 0.194424526132387 0.198636764140996 0.206651239181861 0.20072070438717 0.193024522794509 4 4 + 10694674 10695126 10694959.091 10691684 10695711 + gene protein_coding_gene FALSE TRUE AT4G19650.1 similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT5G45113.1); similar to Os08g0518200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062250.1); similar to Os07g0409400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059441.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) 0.051639407984122 0.548915310051743 0.59414810023085 1 -0.459766952694955 3.61770073728418 0.051639407984122 0.0788247362036485
AT2G43680_at 9.6478489655915 9.43468956931257 9.54860479492338 9.47940006123276 9.94018639342737 9.6798402751874 8.65739665830802 8.45529847457898 9.61372447676716 9.45844443593957 9.32861371093093 9.23183937091215 9.45152581172902 9.13720284077558 8.71688244516817 9.23989908429185 8.79634614845434 9.04915933829074 9.82392130652443 0.121163420205712 0.115651844588347 0.120038207148301 0.119583500147773 0.116885761471963 0.115259943996477 0.115746942060720 0.113992610260229 0.125326328822581 0.111550556813676 0.111550556813676 0.113087810151385 0.111550556813676 0.123315777517356 0.123263855913477 0.115146189723181 0.132337505479431 0.123494499404415 0.111550556813676 2 2 + 18118067 18118609 18118326.182 18115425 18118908 + gene protein_coding_gene FALSE TRUE AT2G43680.1|AT2G43680.2 IQD14; calmodulin binding similar to IQD13 (IQ-domain 13), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G59690.1); similar to P0696G06.23 [Oryza sativa (japonica cultivar-group)] (GB:BAC06266.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.0500514924935036 0.548894232714164 0.594162074344542 1 -0.459778331853982 18.7308899825183 0.0500514924935036 0.0689726509463267
AT3G12890_at 0.790712856495017 0.534690202481108 1.00677651634369 0.691234048977885 0.650699309750628 0.79354552873033 0.661989534202442 0.78590529344904 1.11244793092382 1.21143064296124 0.983453382191692 1.40580525111955 0.95687950433818 1.12657927231010 1.14382423518253 1.34900017619682 1.24911964594755 0.772820457710809 1.01470253975232 0.182800593165084 0.184334452835278 0.184948338747549 0.175653899219012 0.176521023183006 0.175653899219012 0.180072331118855 0.179655703875681 0.179090811116196 0.183687245510536 0.177768470413448 0.18385254392225 0.182150213730545 0.179535313879072 0.186012453810840 0.179213140846291 0.179754989205677 0.177803786011319 0.176611699426240 3 3 + 4099393 4100226 4099786.636 4099206 4100480 + gene protein_coding_gene FALSE TRUE AT3G12890.1 ASML2 (ACTIVATOR OF SPOMIN::LUC2) Encodes a protein belonging to a class of CCT (CONSTANS, CONSTANS-like, TOC1) domain proteins. The protein contains a 43 amino acid-long sequence with high homology to the CCT domain but does not have any B-box or GATA-type zinc finger domains. Functions as a transcriptional activator and regulates the expression of at least a subset of sugar-inducible genes. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G63820.1); similar to Os10g0466500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064805.1); similar to Os01g0835700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044727.1); similar to putative flowering-time gene protein [Oryza sativa (japonica cultivar-group)] (GB:AAK27800.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain CCT; (InterPro:IPR010402) 0.0514071243529611 0.54870212575482 0.594289447707071 1 -0.459882026910091 1.85759196722233 0.0514071243529611 0.0775614720264938
AT4G09550_at 6.36402088374761 6.35582282709709 4.76711064110721 5.3283888182037 5.92417954846746 5.8463137982784 4.68979663080244 5.21218359070824 5.89612670179387 5.77422738803325 6.29127164057008 6.33758616807108 5.995225775623 6.42513154805842 6.87285848062664 5.47119152479671 5.48168084398827 5.97866071657959 5.70606512158043 0.199365568927331 0.193008052206157 0.205228661362555 0.193008052206157 0.200414575160501 0.210793548949449 0.208632463153013 0.203311631384316 0.20630825537995 0.197774242615145 0.197307413808530 0.199330105360709 0.193700887953261 0.197433434295435 0.200012483149208 0.198608859078596 0.194235749742904 0.200065462384597 0.200317671207052 4 4 + 6039708 6039859 6039776.273 6039115 6040212 + gene protein_coding_gene FALSE TRUE AT4G09550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73790.1); similar to Os03g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050438.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89222.1); similar to Os03g0824000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051747.1) 0.062801659289363 0.548573309313096 0.594374865322546 1 -0.459951540000708 11.5103973795141 0.062801659289363 0.133381438537795
AT2G15660_at 2.11307952563015 1.53027210677461 2.05005924442370 1.59095131686779 1.29574701394194 2.02368367896103 1.34476391158703 1.62470489966317 2.15876284357192 1.80152957567801 1.94407759843849 1.72200053262325 1.74267883337487 1.79820333889905 1.97602850589245 1.94146814674741 2.09984224521215 1.96343122736455 1.53830947564240 0.236513383205450 0.234067255073491 0.232043211892840 0.232643830588475 0.236232923348716 0.235423263245052 0.234481185977168 0.23807652249916 0.243766395138264 0.234124369177427 0.236685257418631 0.234963504990732 0.237643121068721 0.239648811077527 0.238988966632283 0.233892064326649 0.232101010568546 0.236164994483951 0.233516860953788 2 2 - 6831609 6832131 6831855.364 6831328 6832658 - gene protein_coding_gene FALSE TRUE AT2G15660.1 transcription factor similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT2G40210.1); similar to Transcription factor, MADS-box [Medicago truncatula] (GB:ABE94129.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Plasmid maintenance toxin/Cell growth inhibitor; (InterPro:IPR011067) 0.0762521039532303 0.548556379485164 0.594386091893798 1 -0.459960674683917 3.56232451316441 0.0762521039532303 0.186281374591551
AT4G03940_at 2.33803843810870 2.08087140863015 2.69563344555610 2.29527697487346 2.06456265966959 2.34313139073952 2.25482137732285 2.33234031008536 2.35550481998564 2.71362974411320 2.01302936211479 2.33588164368621 2.45920312168728 2.36774099838601 2.42807349437216 2.00367546548796 2.53431954997586 2.49604830309536 2.54314186735955 0.201391906041643 0.195108697258436 0.194673588185234 0.196889256917782 0.193327399153063 0.198046463928611 0.197319174059772 0.209994246835005 0.202356663893883 0.194743712916372 0.196517766087946 0.193327399153063 0.203104023938785 0.202391126919476 0.193417860625639 0.196807473803377 0.199079309976594 0.200260009678993 0.193327399153063 4 4|0 +|/ 1874756 1875198 1875017.222 1873622 1875231 + gene protein_coding_gene FALSE TRUE AT4G03940.1 unknown protein -0.0547728753145946 -0.548297841102843 0.594557548601441 1 -0.460100139038216 4.73417048537496 -0.0547728753145946 0.0963574067471068
AT1G30350_at 0.676322578309782 0.324696912835517 0.446469591696577 0.72278701130979 0.237507200614087 0.598467578505003 0.400126524384073 0.628388450292613 1.14545305188373 0.549632844688357 0.83385466144543 0.440798663946469 0.97974782973631 0.161988816221308 0.517267123552604 0.882568226706962 0.560863484592478 1.12957779281512 0.693129344871097 0.209822666033050 0.204737334505838 0.207576707676023 0.212020756716510 0.206473825510582 0.209004396634948 0.204858346827923 0.21414430239361 0.208685449324563 0.206247503923667 0.219031722356338 0.216269570169613 0.216413950406912 0.204449957048525 0.213200225725902 0.214257015767011 0.215535505219332 0.220055941792284 0.206285725793465 1 1 - 10710180 10711113 10710713.364 10710061 10711646 - gene protein_coding_gene FALSE TRUE AT1G30350.1 pectate lyase family protein Identical to Putative pectate lyase 4 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9C8G4); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G11920.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.0569070965973883 -0.548202064688965 0.594621071872333 1 -0.460151788352522 1.24654826700584 -0.0569070965973883 0.107012703704936
AT1G17880_at 9.50598946561114 9.61950829473403 9.36995729944397 9.20362151366239 9.37907312857002 9.24293417771521 9.62666274694571 9.7268577176517 9.06530035732382 9.53871404706486 9.74793896798267 10.0002461092573 9.67652288354527 9.48180342864546 9.94719083840144 9.41765402343758 9.26683445379826 9.0174880816732 9.42327010010507 0.110939328793449 0.110673677313441 0.116092137963264 0.117872592226739 0.112694992949539 0.116782961879727 0.113434640421343 0.110321678961096 0.122499714259847 0.106907965811352 0.109839752227765 0.106907965811352 0.108786895739327 0.113559430406615 0.112847349310195 0.111174774303572 0.119423314780440 0.118759491043343 0.107765298400807 1 1|0 -|/ 6152599 6153376 6152966.333 6152402 6153975 - gene protein_coding_gene FALSE TRUE AT1G17880.1 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to transcription factor homolog BTF3-like protein [Lotus japonicus] (GB:CAE45592.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715) -0.0469131731048402 -0.548059977494418 0.594715317086532 1 -0.460228396003661 18.9152695512954 -0.0469131731048402 0.0454995446793194
AT1G78470_at 1.28749419422070 1.62345073588899 1.44467516858165 2.16385512706643 1.01660919089606 1.72486842357224 1.25263945244012 1.12335698799874 1.27201600119103 1.47905119239909 1.46683180342841 0.853659378753586 1.48487037020959 1.30394770848317 1.54869095414220 1.26018552907439 1.50784562528343 1.43587138549909 1.66371485125971 0.237274163849147 0.236438284228298 0.236427206977708 0.237464296972407 0.244895982434138 0.236747867092207 0.244698089736415 0.244595898319952 0.247773836928594 0.243932984658037 0.241138426866283 0.242608623650563 0.243964175095151 0.240594576040551 0.236427206977708 0.237616519118712 0.245809572297592 0.242608826194381 0.237103847888185 1 1|0 +|/ 29527119 29527824 29527501.4 29526663 29527889 + gene protein_coding_gene FALSE TRUE AT1G78470.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67390.1); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0759552321506233 0.548026663812918 0.594737414893604 1 -0.460246354681339 2.86928458973771 0.0759552321506233 0.185453867725563
AT3G21780_at 4.23380378624094 4.06353622732163 3.35617150042843 3.69832543074013 3.37586333436311 3.43098907908191 1.49595353670720 1.73457462722139 2.28984116541526 2.13899621975981 1.57100959195136 1.92277958304281 1.66607099441060 1.89024877580583 1.21769861079318 1.91694137079443 2.01420580053276 1.98277243781966 2.33065262798788 0.246339692122403 0.259176470834478 0.25208630549996 0.241070753393364 0.247167638873781 0.252985636672838 0.238842311213726 0.235451574333915 0.235480992164006 0.248449871709618 0.242898881122935 0.240628271589818 0.235451574333915 0.235451574333915 0.238445597571587 0.239182534428879 0.240350628156093 0.243242352034871 0.235451574333915 3 3 - 7675136 7675612 7675402.091 7675058 7676353 - gene protein_coding_gene FALSE TRUE AT3G21780.1 UGT71B6 (UDP-glucosyl transferase 71B6); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with UDP-glucosyl transferase activity that was shown to preferentially glucosylates abscisic acid (ABA), and not its catabolites. Moreover, UGT71B6 was shown to have a strict preference for the naturally-occurring ABA enantiomer, (+)-ABA, and not its 'unnatural' relative, (-)-ABA. This is in contrast to the other identified UGT genes catalyzing the glucosylation of ABA which were shown to accept both stereoisomers as substrates. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21790.1); similar to UDP-glucose glucosyltransferase [Fragaria x ananassa] (GB:AAU09444.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0514614248517256 0.547511346909032 0.595079292215451 1 -0.460524019733297 5.1865918069455 0.0514614248517256 0.0785521837813126
AT1G59540_at 0.40028274497944 1.08668847172491 0.184305305855305 0.5396352434323 0.712483483106099 0.839719271763515 0.522568256252739 0.974333461735168 0.954268952017895 1.43546966278198 0.60637457171075 1.05621113789847 0.952093969212015 1.35691863992180 1.10108562070997 1.13823670170845 0.570991579847502 1.35943560380983 0.541977091347828 0.192497876001283 0.190979373504578 0.192764129731436 0.206471337298268 0.194986570859835 0.193874624646680 0.188947449195966 0.189887511183345 0.189366944379427 0.208328933716612 0.198277698433279 0.188662443179030 0.196108009840456 0.194552387330874 0.202682090229975 0.192688008611025 0.196640354948711 0.191738441593327 0.199687856704886 1 1 + 21881990 21883021 21882442.364 21877729 21883204 + gene protein_coding_gene FALSE TRUE AT1G59540.1 ZCF125; microtubule motor Encodes a kinesin-like protein. similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT3G10180.1); similar to Centromeric protein E, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94250.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.0682512491236567 -0.54700553706323 0.595414961953232 1 -0.460796322751678 1.65495555326531 -0.0682512491236567 0.156487059585843
AT3G59410_at 6.55324569057443 7.06447215699815 6.85088331501505 6.96445974061378 7.6235149802111 6.86399291186085 7.05966551311815 6.68268201099909 6.77770132420417 7.17084352514361 6.84571506689102 6.70399421731804 6.3985581332785 7.0785618928964 6.77154996622978 6.72294981164792 6.31956895124648 6.87886841580321 7.33760726877264 0.198799282814028 0.194499767969279 0.200824895636126 0.198026404791294 0.193581955024055 0.194714300710976 0.199726870947547 0.193255070548809 0.197726879153104 0.194776625625875 0.193821908319964 0.193061973922795 0.204620180711647 0.197615682951488 0.193628390221918 0.188289361698635 0.227741744912967 0.193814102858595 0.193882190887907 3 3|0 +|/ 21968856 21970104 21969488 21961546 21970243 + gene protein_coding_gene FALSE TRUE AT3G59410.1 protein kinase family protein Identical to Probable serine/threonine-protein kinase GCN2 (EC 2.7.11.1) (GCN2) [Arabidopsis Thaliana] (GB:Q9LX30;GB:Q8H2D3); similar to histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT3G02760.1); similar to H0425E08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67537.1); similar to OJ990528_30.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE02047.2); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain RWD; (InterPro:IPR006575); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266) -0.0723584192284084 -0.546965371632189 0.595441621101847 1 -0.460817935668602 13.8630419630675 -0.0723584192284084 0.172468958804728
AT4G04930_at 0.89345605462138 0.761134852797649 0.706207860201993 0.974622884984217 0.637271665271633 0.689331436430308 0.555168686774302 0.618237796066193 1.24598270563303 0.597558001742304 0.683413385307247 0.934296028681936 0.402364974447467 0.903062022442779 0.793803347173532 0.45299273145211 1.24371949751782 0.5045898713633 0.79695117639985 0.203523038013264 0.204133271858436 0.201664770226374 0.209649338573596 0.20405684099781 0.204098072930121 0.201664770226374 0.202122905887454 0.212868110444909 0.203097240840809 0.207743110518792 0.204918049040742 0.205367625317397 0.209487019000142 0.209947932081807 0.207274404752012 0.204802561883317 0.201664770226374 0.212549359068688 4 4 + 2510332 2510729 2510530.364 2509131 2511143 + gene protein_coding_gene FALSE TRUE AT4G04930.1 DES-1-LIKE (fatty acid desaturase 1-like); oxidoreductase DES-1-like transmembrane protein. similar to putative sphingolipid delta 4 desaturase DES-1 [Lycopersicon esculentum] (GB:AAM12534.1); contains InterPro domain Sphingolipid delta-4 desaturase; (InterPro:IPR011388); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257) -0.0477623074014829 -0.546949001263458 0.59545248684516 1 -0.460826744093576 1.53940100142179 -0.0477623074014829 0.0536869729907238
AT3G60400_at 2.08503444597994 3.11446173676654 2.70224769881499 2.73701418279304 3.14157005636522 2.57462693595747 2.64218541038921 2.98734292337692 2.59256501602549 2.02194935905919 2.30397438247544 2.28889121321623 2.52573579019563 2.02044472590721 2.42878288841148 2.33768205520961 3.06066395286266 2.54661751841971 2.44910855278683 0.208619883029517 0.204033873025000 0.203364117937956 0.207604469411479 0.205211333123523 0.208446233118578 0.201557888385513 0.205451529521007 0.207007023250714 0.230035065003736 0.20908717293661 0.209025790107204 0.204034799242465 0.206105601570051 0.205512859921601 0.204016311047066 0.201556706457331 0.213302627469722 0.202784356130108 3 3 + 22341155 22341690 22341454.455 22340067 22342078 + gene protein_coding_gene FALSE TRUE AT3G60400.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT5G06810.1); similar to Os08g0518200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062250.1); similar to Os07g0409400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059441.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) 0.083083339617301 0.546693739409763 0.595621928887558 1 -0.460964061015915 5.14488044470262 0.083083339617301 0.212052874319196
AT3G09790_at 1.15993462666209 1.01148765061959 1.25169117764230 1.40423672348697 1.06873033815038 1.46232678743867 1.25045346308631 1.18797418850469 1.54989628913873 1.53799139134825 1.3815635775764 1.32910897253688 1.40402895845813 1.4164096080661 1.37306140376588 1.03699608570376 1.94353833394459 1.46063197380957 1.29160857925977 0.203903994106486 0.207444267676456 0.203903994106486 0.216030855177855 0.20811392897229 0.209604822091583 0.204797019910497 0.211743643345561 0.209230892198543 0.217028861687713 0.204811392239719 0.203903994106486 0.203903994106486 0.206706840117414 0.212732910554005 0.20510990147873 0.211799126152421 0.206854832217047 0.216824128948221 3 3 - 3004120 3004672 3004392.909 3003867 3006197 - gene protein_coding_gene FALSE TRUE AT3G09790.1 UBQ8 (ubiquitin 8) encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. similar to UBQ10 (POLYUBIQUITIN 10), protein binding [Arabidopsis thaliana] (TAIR:AT4G05320.4); similar to polyubiquitin [Schizosaccharomyces pombe] (GB:AAC64787.1); similar to polyubiquitin [Pinus sylvestris] (GB:CAA66667.1); similar to PREDICTED: similar to ubiquitin C isoform 21 [Bos taurus] (GB:XP_880428.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.0513095260559096 0.546546338579997 0.595719784556284 1 -0.461043327086158 2.66360409485633 0.0513095260559096 0.0781870992916186
AT4G16830_at 9.8952850749204 9.80247780328567 9.8661689708735 9.84406986616686 10.0543357698389 10.0186238510930 9.705436488075 9.72137257754925 10.0561550965089 9.95065556077332 9.87180379106314 9.8257230901369 10.0742815891898 9.96585062262629 9.7085244632394 9.9488911966931 9.95218667315616 10.0333653131969 9.98694063563563 0.0969169552788292 0.0960506868919759 0.0917546574135744 0.0956486485240097 0.098802837771325 0.100327603440635 0.0951794447965034 0.0950786542160566 0.100346679039754 0.0973456293624902 0.100494158564029 0.095094349293793 0.0910990739790205 0.10295675010581 0.0959165898334843 0.0949076158779173 0.099101735043202 0.100318009806629 0.0972526018812234 4 0|4 /|+ 9471379 9472300 9472033.4 9470404 9472613 + gene protein_coding_gene FALSE TRUE AT4G16830.1|AT4G16830.2|AT4G16830.3 nuclear RNA-binding protein (RGGA) similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to nuclear RNA binding protein A [Spinacia oleracea] (GB:AAF14244.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861)|similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to transcription factor [Vicia faba var. minor] (GB:CAA66481.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861) 0.0446589366544587 0.546283867193324 0.595894053387623 1 -0.461184423461946 19.8237190202513 0.0446589366544587 0.0178429850340781
AT4G02580_at 10.4592777478688 10.5437128834074 10.3992382855496 10.5589344997061 10.3379608098649 10.2716601220066 10.5101253997273 10.8993050169074 10.1359533078107 10.4215939295301 10.4775759852035 10.5485235645857 10.3207566202555 10.4416892101877 10.6204785109446 10.3162338210602 10.1062663030864 10.3121989878708 10.2925526206432 0.0744931679888536 0.0734982136250823 0.0761146634668947 0.0764427276719689 0.0747354094959219 0.0759049233681615 0.0772782552793392 0.0798201427146538 0.0868380659082011 0.0773536536460653 0.0761327492168269 0.0734982136250823 0.0766639486973597 0.0750762954372245 0.078999892795811 0.0737206780447291 0.0891487458778721 0.0745052548332757 0.0775591948738046 4 4|0 +|/ 1135589 1136871 1136088.8 1134467 1137156 + gene protein_coding_gene FALSE TRUE AT4G02580.1 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative Identical to NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) [Arabidopsis Thaliana] (GB:O22769;GB:Q940Z9); similar to NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas reinhardtii] (GB:AAQ63695.1); similar to NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit (ISS) [Ostreococcus tauri] (GB:CAL56692.1); similar to Os05g0509200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056000.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain NADH dehydrogenase (ubiquinone), 24 kDa subunit; (InterPro:IPR002023); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0507790383123201 -0.546257834187392 0.595911339544349 1 -0.461198414505903 20.8356928429934 -0.0507790383123201 0.0751321817583468
AT4G10930_at 5.86961232344169 5.30800401288353 5.1557173387482 5.55949983315325 4.99333272567439 4.90099724230054 4.64290680845646 4.49694949896832 4.60544843114808 4.57791470523106 4.52723643726902 4.35497616848452 4.59925829030065 4.98119582286424 4.36295687095781 4.68734227673836 5.1039986543577 4.5454844542706 4.61039241136633 0.238304784144184 0.237612416228331 0.240170280631909 0.239622286194109 0.231227464738765 0.238361569312002 0.227495449040848 0.233277563226273 0.246591035467151 0.226979860008123 0.231599217087031 0.234916831049257 0.232272084171025 0.235528378742411 0.234989918790175 0.226979860008123 0.228597386157767 0.242549388749217 0.228167077750727 4 4 - 6705186 6705829 6705582.636 6705143 6708842 - gene protein_coding_gene FALSE TRUE AT4G10930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96698.2) 0.0602031150109015 0.545910040262911 0.596142302983434 1 -0.461385270782130 9.73748979186356 0.0602031150109015 0.123376394284874
AT2G14540_at 0.79336767310806 0.777446348646855 0.52919499801237 1.16118762388861 0.965511404491277 0.921120479501668 0.534471332721414 0.95221953124919 1.01209579840713 1.28026588188472 1.27776206876313 0.950967455908181 1.11122582877156 1.29589923630935 0.975354878320143 1.00477074278084 0.645890273167665 0.918607247639062 0.793029928424715 0.212245380344657 0.221202007579911 0.214970365796876 0.214860122662741 0.216780207059344 0.224821972641797 0.213175016032883 0.216217553896106 0.225540106694531 0.220333842767692 0.214466169149824 0.220497724408185 0.217057107881488 0.225552448579719 0.212953806621620 0.212245380344657 0.221316109826257 0.215823633270055 0.224680072593838 2 2 - 6205013 6205556 6205333.455 6204745 6206488 - gene protein_coding_gene FALSE TRUE AT2G14540.1 serpin family protein / serine protease inhibitor family protein similar to serpin family protein / serine protease inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62170.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) 0.0619866259637023 0.545570971058625 0.596367517369993 1 -0.461567331596623 1.85482671696727 0.0619866259637023 0.131356615549658
AT2G04063_at 3.9947430670444 3.77721982300234 4.23970999695636 3.81937942587156 3.70252073175489 3.84695990684336 4.17677294712665 4.00966240556317 4.85130641311676 4.48802687055724 4.69710684971 4.18113906465198 4.55478283590073 4.65982976322356 4.25179909142981 4.32600621817105 4.79445230031978 4.45122880080692 4.18708593448007 0.192099492715654 0.204002860263381 0.200761156672319 0.193441339960541 0.197630778289927 0.199248016058307 0.197009959069217 0.201164743967716 0.209779991896619 0.192947018919389 0.203646430024309 0.191980451471996 0.199630920548405 0.194594459980871 0.197738677567326 0.194267191724647 0.210922601770533 0.198153173906643 0.195314207733050 2 2|0 -|/ 1349766 1350142 1349899.333 1349755 1350174 - gene protein_coding_gene FALSE TRUE AT2G04063.1 glycine-rich protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G31750.1); similar to hypothetical protein [Solanum lycopersicum] (GB:BAD95795.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0533601679261129 -0.545480849744304 0.59642738462517 1 -0.461615703660689 8.44504579880939 -0.0533601679261129 0.0903840435989594
AT3G13880_at 1.35372041566509 1.39854616475889 1.80111752910023 1.70873795736774 1.31896467864186 1.59640898115237 1.48673310353799 1.6792330255752 1.40253844001257 1.86454306779769 1.584515645436 1.66597326789709 1.44690346299786 1.41600759558987 1.83239512300392 1.50559035094128 2.02997822088458 1.61266347118042 1.73183609512868 0.211790887702496 0.216970456772662 0.211647634784419 0.213303666401060 0.217556736474105 0.212671394979355 0.213623523247762 0.216421006034724 0.217209449913263 0.217379726882858 0.215118104482372 0.213710521435662 0.224343268095659 0.220691626054227 0.211647634784419 0.215125681240291 0.219826612284020 0.214828792541852 0.223474584701901 3 3 + 4573853 4574403 4574108.182 4572187 4574497 + gene protein_coding_gene FALSE TRUE AT3G13880.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G27610.1); similar to PPR repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89008.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0485983168881615 0.545478760010751 0.596428772864535 1 -0.461616825223012 3.19446236191877 0.0485983168881615 0.0610799357017043
AT4G35985_at 5.54392644470447 5.62497782969423 5.28364789446274 5.31838452654728 4.61651668819542 5.01552572963736 4.43835063666475 4.48022125890423 4.35834153474378 4.61928470299745 4.17840665298007 3.68856212737516 4.03984439213687 4.61574187472888 4.02562701441854 4.30795824599785 4.27768294055996 4.48126297916021 4.03825001333356 0.195711419085409 0.199248112810145 0.193073472328013 0.200309081737054 0.182509390516452 0.193304309074237 0.19013203405515 0.191967492641282 0.183404895085544 0.200762483670750 0.182509390516452 0.185299510549219 0.186313491955245 0.185904484510112 0.199226453575019 0.185070311326868 0.196399435219202 0.190801502992401 0.186283634480058 4 4 - 17032327 17032971 17032582.727 17032271 17033865 - gene protein_coding_gene FALSE TRUE AT4G35985.1 senescence/dehydration-associated protein-related similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) -0.0500449856932307 -0.545265429257473 0.596570500330753 1 -0.461731298760016 9.31044947382362 -0.0500449856932307 0.0710867873867012
AT4G08940_at 3.06860425252674 3.55771041190882 3.31057649812667 3.20041397275347 3.04168301771979 3.04133926613165 3.54792234458517 3.44303624417111 2.25541046186305 3.296604020202 2.8872013433148 2.71801780982673 3.04018582295095 2.8233144221056 3.31223946766858 3.2959411921945 2.90715674870654 2.80457062169787 2.91938172456713 0.219894363484677 0.215613535892028 0.214554026183919 0.211497451844207 0.216080022020026 0.227141294776838 0.215678966391977 0.236121267915848 0.216943536366054 0.219517330296742 0.211497451844207 0.211497451844207 0.221730123732466 0.21313941596396 0.217913290410361 0.211656478342590 0.219959187192664 0.228179807378282 0.215756334273259 4 4 - 5731103 5731589 5731327.8 5730794 5732192 - gene protein_coding_gene FALSE TRUE AT4G08940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G21970.1); similar to Os05g0571100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056371.1); similar to Os09g0473400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063450.1); similar to Plant specific of unknown function (DUF860), putative [Medicago truncatula] (GB:ABE89611.1); contains InterPro domain Protein of unknown function DUF860, plant; (InterPro:IPR008578) -0.0530177158004679 -0.545258505507156 0.5965751004562 1 -0.461735013345354 6.17509933304155 -0.0530177158004679 0.0886407931056945
AT3G63330_at 4.91796210141738 4.46416296836175 4.75347271959416 4.38723727007910 5.40033521197446 4.70489151633307 4.95005078841449 4.64070851683055 4.73408559233832 5.2606870374661 4.94933881111778 4.91435496410355 5.1511949054131 4.8361235235993 4.77152352352563 4.83232223577097 4.89882133002063 4.99039160765756 5.38662469357895 0.184545360426655 0.185002222634593 0.185803063898405 0.186664215680253 0.191545121883440 0.179705125813999 0.181512244465749 0.180493024055884 0.189881762347859 0.176852608606793 0.182010935490026 0.188472214783855 0.180100118584822 0.186503811053023 0.183368352306344 0.180249768215359 0.177914811253248 0.182802852735023 0.179551453748461 3 3|0 -|/ 23403185 23404052 23403830.286 23402603 23405738 - gene protein_coding_gene FALSE TRUE AT3G63330.1|AT3G63330.2 protein kinase family protein|kinase similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to Serine/threonine-protein kinase Doa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94449.2); similar to Os11g0586100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068167.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3), kinase [Arabidopsis thaliana] (TAIR:AT5G39440.1); similar to Serine/threonine-protein kinase Doa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94449.2); similar to Os11g0586100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068167.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0704302463687851 -0.545204046759438 0.596611283379547 1 -0.461764228860171 9.79992328851505 -0.0704302463687851 0.165933763086105
AT3G28980_at 2.37027689073952 2.89983096121812 3.28969029714687 2.91417634499832 2.43798731061228 2.82265386688764 2.92517069825434 3.10114728791725 2.83656255699381 3.08920778773720 3.10897115775325 2.85712566349514 3.12323371723406 2.76994045477672 2.83888531956409 2.67048266049348 2.67548554066803 2.88125602269849 3.17237711608424 0.189710092106832 0.191133057143696 0.187531109293537 0.198049602820995 0.192515391503100 0.193224394157816 0.203691189933004 0.198795372454920 0.189801515815433 0.19358211245753 0.205527396157946 0.187531109293537 0.196451998583924 0.189077795250936 0.194339392356865 0.193486797349530 0.197901073934306 0.197706943622455 0.187555757662012 3 3 - 10994647 10995261 10994912.727 10994427 10996239 - gene protein_coding_gene FALSE TRUE AT3G28980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28810.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28820.1); similar to PREDICTED: similar to CG18255-PA, isoform A [Tribolium castaneum] (GB:XP_973903.1); contains InterPro domain Protein of unknown function DUF1216; (InterPro:IPR009605) -0.0625113789036876 -0.544593421854725 0.597017066688514 1 -0.462091622751376 5.79431090090037 -0.0625113789036876 0.134089378197351
AT1G71770_at 1.44689555832389 1.13914897841791 1.37314984072938 0.96504688585549 1.10364036790268 1.19800758344397 1.11867790199173 0.909473236040924 1.18480744859375 1.54891134103250 1.25909561536721 1.15672011657858 1.75136388311270 0.84852778633652 1.22410764811292 1.15147611960465 1.43237527055265 1.2465511826005 1.38870201820657 0.222400106157968 0.220163420029141 0.222644659695233 0.218603350122578 0.217431667239532 0.217431667239532 0.217431667239532 0.222600729424635 0.228817835134207 0.222275669126895 0.226386363175690 0.219103968687186 0.222593921160472 0.218040416813946 0.221385678992652 0.217431667239532 0.217431667239532 0.228561128517767 0.220296679877387 1 1|0 -|/ 26994449 26995220 26994686.1 26994170 26997109 - gene protein_coding_gene FALSE TRUE AT1G71770.1 PAB5 (POLY(A)-BINDING PROTEIN); RNA binding Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro. Identical to Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) (PAB5) [Arabidopsis Thaliana] (GB:Q05196;GB:Q9M9G9); similar to PAB3 (POLY(A) BINDING PROTEIN 3), RNA binding [Arabidopsis thaliana] (TAIR:AT1G22760.1); similar to poly(A)-binding protein (GB:AAA32832.1); similar to RNA-binding re (GB:ABE82276.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515) -0.054475407852563 -0.544151379120628 0.597310910300258 1 -0.462328413399174 2.47321378011866 -0.054475407852563 0.096961239070485
AT3G55360_at 8.2966340798781 8.42542579858517 7.91073799683925 7.99460834197049 8.29507658564568 8.7138846147247 8.92709304665245 9.54504541868579 9.67231220695755 8.82216728430538 10.3334443133578 10.2331602789534 9.56272273640171 9.87915243516447 10.2218262298139 9.3712301068883 8.75329702905347 9.97855241995676 8.79916292029768 0.139804503208056 0.142108966519423 0.138294522629712 0.144799330880375 0.141080313075091 0.142601523882476 0.137966892444430 0.135000289523144 0.144290998167970 0.137957960306641 0.137933872149037 0.140352987051796 0.138086406388196 0.143009437483208 0.141840283267197 0.133854681995430 0.148701306908820 0.138904811884682 0.133854681995430 3 3 - 20532168 20532798 20532591.364 20531907 20533991 - gene protein_coding_gene FALSE TRUE AT3G55360.1 ATTSC13/CER10/ECR/TSC13 (ENOYL-COA REDUCTASE); 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport. similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT5G16010.1); similar to TSC13 protein [Nicotiana benthamiana] (GB:AAY17262.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.0619098443449222 0.543798428982952 0.597545584426926 1 -0.462517349291398 17.9583402341488 0.0619098443449222 0.131895226239293
AT4G33720_at 1.93915757856259 1.75335348290563 1.68372444786514 1.70079666214731 1.33095612595825 1.71251482882955 1.44062918943028 1.61401568477725 2.02595595653664 1.52330355919729 2.52893115184213 1.70726281847148 2.05026683421808 2.04279769094334 2.04454688810013 1.57667320656284 1.56743434905779 1.63882291392430 1.58765739888623 0.227305275783962 0.216546552039571 0.215432578750237 0.216339175168661 0.229242204939257 0.221177722258404 0.219223799806302 0.221365049307795 0.216316306845980 0.211908847292763 0.221271763264301 0.214729300935572 0.218257538730445 0.216090343335371 0.217116353786705 0.215771470722292 0.211908847292763 0.211908847292763 0.213446904406139 4 4 + 16182863 16183271 16183030.182 16182755 16183536 + gene protein_coding_gene FALSE TRUE AT4G33720.1 pathogenesis-related protein, putative similar to ATPRB1 (Arabidopsis thaliana basic pathogenesis-related protein 1) [Arabidopsis thaliana] (TAIR:AT2G14580.1); similar to pathogenesis-related protein 1a [Malus x domestica] (GB:ABC47922.1); contains InterPro domain Ves allergen; (InterPro:IPR002413); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) 0.0512476878572102 0.543740130971945 0.597584350983142 1 -0.462548545369066 3.45034230998286 0.0512476878572102 0.0793912753022751
AT3G18290_at 7.05638310152156 7.13816934155343 6.39300941653622 6.28545029109359 8.18250163323187 7.9850280344195 7.22786314541056 7.0352172227903 7.45506528793239 8.20689689882098 7.3614686724329 7.76105925886594 8.39404908148908 8.09708721859727 7.64838574894218 8.71387412319999 8.40881165655217 5.66201025148119 8.18122940359971 0.150675438539099 0.143099467786736 0.150591631150351 0.150080019356332 0.143636337438605 0.138393174812610 0.141738206564593 0.145283615611747 0.149958409783963 0.137829438958769 0.143425357574001 0.140248155201849 0.148362427514038 0.136955279572006 0.136990617908661 0.142314748943370 0.151471399131367 0.148169058348326 0.137222916503298 3 3|0 +|/ 6279220 6280110 6279652.222 6274001 6280516 + gene protein_coding_gene FALSE TRUE AT3G18290.1 EMB2454 (EMBRYO DEFECTIVE 2454); protein binding / zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74770.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type; RINGv [Medicago truncatula] (GB:ABE78891.1); similar to putative E3 ubiquitin ligase [Lotus japonicus] (GB:BAF38781.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type; RINGv [Medicago truncatula] (GB:ABE81983.1); contains InterPro domain Hemerythrin HHE cation binding region; (InterPro:IPR012312); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0473990688356341 -0.543526401569157 0.597726486265634 1 -0.462662887967247 15.0147396641010 -0.0473990688356341 0.0531608120697748
AT3G51970_at 0.84632015555827 0.90100432253721 0.626666813896142 0.727931628772546 0.245002896328590 0.805095892314331 0.78102893017997 0.903748737338405 0.381437733722872 0.595391464571872 0.586803781638794 0.0711409632466001 0.605679448886813 0.706496917407342 1.06379503192199 0.759105302474036 0.990493306864268 1.14058637148727 0.805470790794444 0.228282155806181 0.219682430744256 0.219610627403575 0.221802850574858 0.216713477245645 0.218332981333737 0.215748822513445 0.215748822513445 0.22109596630103 0.218967120554444 0.224145344660976 0.217675745522605 0.218985124308828 0.220286512695033 0.220472917078207 0.223257068971565 0.234523082846555 0.229979432156585 0.217344538263242 3 3 + 19295867 19296372 19296060.636 19295317 19296560 + gene protein_coding_gene FALSE TRUE AT3G51970.1 long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein similar to membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related [Arabidopsis thaliana] (TAIR:AT5G55380.1); similar to wax synthase isoform 2 [Vitis vinifera] (GB:AAO18665.1) -0.0552192922238675 -0.543266588970092 0.597899291639521 1 -0.462801827407099 1.39690624054266 -0.0552192922238675 0.101205059661547
AT2G36760_at 1.97205139863315 1.70937836048419 1.89732347489652 2.13558537539448 1.93188743761847 2.44063065337006 2.32088830944906 1.65131246716268 2.30803218978606 1.7342035954528 2.01761579737979 2.01704035198735 2.27158987534033 1.85030996973891 2.35895744770213 1.82546649355616 2.44494197805566 2.50355005190736 2.59652777646263 0.186482864756901 0.188764581401817 0.191587268715254 0.185390933031211 0.18379612520532 0.189087924790520 0.188146881721447 0.186876860134045 0.199641191788857 0.188146274053152 0.187250991264061 0.187155594849877 0.192795997671946 0.199667996375735 0.204078852503857 0.189288747003471 0.197123467546650 0.192409163511467 0.190837985160277 2 2 - 15420356 15420689 15420509.182 15420121 15421673 - gene protein_coding_gene FALSE TRUE AT2G36760.1 UGT73C2 (UDP-glucosyl transferase 73C2); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36780.1); similar to DOGT1 (DON-GLUCOSYLTRANSFERASE), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G36800.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G36770.1); similar to glucosyltransferase NTGT4 [Nicotiana tabacum] (GB:BAD93688.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0681059549311208 0.542926312026134 0.598125654312502 1 -0.46298370181782 4.19443477609722 0.0681059549311208 0.157937135214096
AT2G47340_at 1.01084232641568 1.36694704977371 1.30884689110348 1.28338228948085 1.13590062798510 1.14408548920331 1.58537841867178 1.25650384868033 1.33210041916304 1.42626077106774 0.952302226392997 1.13540992943540 1.29347561510949 1.21908072883267 1.61399881481873 1.23621662906294 1.17296013900993 1.47756612426857 1.08066216974512 0.195097514967791 0.192946936089352 0.191973008789104 0.195262194703103 0.200531132239221 0.192220068150958 0.190837059768877 0.191064144597677 0.195422374602511 0.195672101024616 0.201288305286972 0.198256272343816 0.193953758455173 0.193125763888618 0.19173457920149 0.190837059768877 0.194011796961688 0.19447618502396 0.194457393573567 2 2 + 19439489 19440044 19439770.545 19439238 19440174 + gene protein_coding_gene FALSE TRUE AT2G47340.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G02550.1); similar to Plant invertase/pectin methylesterase inhibitor family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95341.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.0519561319505719 -0.542838587364522 0.598184018661014 1 -0.463030572288778 2.5326362322601 -0.0519561319505719 0.0840134489597952
AT2G29860_at 1.44886018750536 1.28658887574515 1.57724089021547 1.38771616316108 1.21564443006029 1.51326592640207 1.07367682892129 1.39861755563423 1.91803334854143 1.56257576224583 1.48007237575796 1.35307670519349 1.39367838863021 1.5876321797485 1.82095411819277 1.24973047983481 1.46582447556167 1.86755435692971 1.78139394881443 0.219498297721843 0.217057883690544 0.222286306168129 0.237351287460802 0.214819643575655 0.215937609212763 0.215463196932377 0.222817706580977 0.212772766602091 0.21261470329385 0.216765465329192 0.214292737419981 0.217656465664834 0.215428197199700 0.215731013021376 0.215439235391552 0.216627919422447 0.220031636323504 0.211071745791498 2 2 - 12744792 12745286 12745084.364 12744743 12745465 - gene protein_coding_gene FALSE TRUE AT2G29860.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G29830.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.0525773221889358 -0.54261075082165 0.598335615052696 1 -0.463152269859316 3.0033595596298 -0.0525773221889358 0.0876307247459634
AT2G22990_at 11.8383238466035 12.1043918248884 12.1075327147058 12.1916362652155 12.7574371784828 12.290538478464 12.5377227333677 12.6457690160962 12.8931346205300 12.8354116772175 13.1035819502998 12.9314399199420 13.0077155082991 13.0114546284675 12.6386864403633 13.0163092212008 12.5628661248475 12.8482242020898 12.7825841355682 0.0856305627623776 0.0850887402933417 0.0900742636255285 0.0869920208834194 0.0848888866814201 0.0980342067620765 0.0859744720995747 0.0844291490028811 0.0949773436667181 0.0847462443025193 0.0846450934143238 0.0850055483632016 0.0843327080912527 0.091585652424897 0.0844843970851448 0.0854085649967533 0.0948046896954806 0.0883411154405235 0.0855924562980275 2 2|0 +|/ 9795426 9796945 9796076.7 9793396 9797259 + gene protein_coding_gene FALSE TRUE AT2G22990.1|AT2G22990.2|AT2G22990.3|AT2G22990.4|AT2G22990.5 SNG1 (SINAPOYLGLUCOSE 1); serine carboxypeptidase sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.1); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0541127878224388 0.542437428709085 0.598450952333643 1 -0.463244816583757 25.1727081208333 0.0541127878224388 0.095968754043584
AT2G28640_at 1.52348711161636 1.44544038167371 1.33601938169831 1.57066816548941 1.25548693387903 1.29903588516243 1.42804824334936 1.48309757146585 1.60636384758211 2.00491411911775 1.55129224476739 1.57710156853191 1.65101395982788 1.50225158574500 1.71171465414675 1.47151182291233 1.54343323649686 1.86050154036627 1.17818966190579 0.213996588800765 0.208615393980653 0.222637484076214 0.222389336883304 0.208565753511467 0.210546317887609 0.209426054246066 0.205374150815215 0.222557002031923 0.207323806415443 0.211444379638277 0.215105074899651 0.217025793674735 0.221350743466445 0.20537869498854 0.205374150815215 0.207010545937107 0.209601654137395 0.221448456813597 2 2 - 12291725 12292271 12292014.455 12291702 12293722 - gene protein_coding_gene FALSE TRUE AT2G28640.1 ATEXO70H5 (exocyst subunit EXO70 family protein H5); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70H6 (exocyst subunit EXO70 family protein H6), protein binding [Arabidopsis thaliana] (TAIR:AT1G07725.1); similar to Exo70 exocyst complex subunit [Medicago truncatula] (GB:ABE84275.1); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) -0.0463011842024723 -0.542153603475746 0.598639848864724 1 -0.463396307090931 3.02020635235907 -0.0463011842024723 0.0444849067317909
AT2G18070_at 1.33748395487612 1.39043959117554 1.79118505382656 1.52971890213893 0.851516451484292 1.27572863257348 1.19817603262899 1.31441597908626 1.81729821614311 1.27143315990987 1.67405344102237 1.54004464719705 1.32612715434990 1.72696292106426 1.05445239177054 1.03496020546066 1.13873685899734 1.58557296350505 1.53885757405344 0.211543101003339 0.213098886634544 0.219584620542628 0.225157873278348 0.218363271460502 0.212445081715704 0.217028973888933 0.217647981228943 0.221165219310567 0.214870125333539 0.212838886415056 0.210893189652986 0.223671785540539 0.215528023498986 0.216199926009449 0.213234641946123 0.211801922188927 0.214099495762574 0.225334252546815 2 2|0 +|/ 7859639 7860652 7859841.444 7859611 7860748 + gene protein_coding_gene FALSE TRUE AT2G18070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23170.1); contains domain FAMILY NOT NAMED (PTHR13448); contains domain gb def: Hypothetical protein At2g18070 (PTHR13448:SF5) -0.0527537282752451 -0.54182642619748 0.598857636183821 1 -0.4635708437474 2.79990481120196 -0.0527537282752451 0.0890242285864295
AT1G67780_at 1.63138502552185 1.59025334720292 1.69555172278858 1.35471736188945 1.29179698513147 1.6116153600759 1.19839255148353 1.62139204299023 1.44284817510195 1.35452989530444 1.75972125829668 1.53482168894624 1.59562103297722 1.63516730520418 1.723057371946 1.42174594127394 1.50467225475826 1.46354011676355 1.53594766125837 0.165706989793898 0.160063573015323 0.162377784479217 0.160925058036768 0.158901520730362 0.164452680798637 0.169573516055539 0.157901713885756 0.161001859573762 0.167226697445324 0.165878169907188 0.161775566516741 0.163523625092581 0.157901713885756 0.165298464608365 0.162647488714831 0.162343500321518 0.157901713885756 0.174870670422611 1 1|0 +|/ 25418202 25418993 25418594.889 25416479 25419193 + gene protein_coding_gene FALSE TRUE AT1G67780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67270.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_001188312.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_788723.2); similar to Os05g0300700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055133.1); contains InterPro domain DDT; (InterPro:IPR004022) 0.0567080381937775 0.541687295969833 0.598950261411274 1 -0.463645034315606 3.01150569054833 0.0567080381937775 0.109322377244884
AT1G77210_at 7.69035406230272 7.94688867243215 7.54773759233941 7.5517095307824 8.47456702520086 7.65246652341942 6.5464897375012 6.17080782546199 7.00294684034169 7.1341890282645 5.30847927813569 6.30765435134089 7.2190593129423 6.31467032406333 5.15727899657165 6.23322754049537 6.6411617947185 6.05213542338374 6.89415358679568 0.254228791662862 0.246417699784766 0.254316749574628 0.246417699784766 0.248289864617505 0.246417699784766 0.259250854223567 0.261214226045062 0.268560594045238 0.246417699784766 0.254820615516852 0.247509493338053 0.251978531951284 0.279837607373213 0.279128057502753 0.251386270961777 0.268742935720987 0.260564940168568 0.257032976900647 1 1 - 29014022 29014556 29014229.364 29013833 29015984 - gene protein_coding_gene FALSE TRUE AT1G77210.1 sugar transporter, putative Identical to Sugar transport protein 14 (Hexose transporter 14) (STP14) [Arabidopsis Thaliana] (GB:Q8GW61;GB:O80655); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT4G02050.1); similar to Sugar transporter superfamily [Medicago truncatula] (GB:ABE81274.1); similar to PaMst-1 [Picea abies] (GB:CAB06079.1); similar to monosaccharide transporter [Glycine max] (GB:CAD91336.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.0691181736249213 -0.5416232585951 0.598992896455805 1 -0.463679175915968 14.0299467192669 -0.0691181736249213 0.162598824439904
AT1G51720_at 8.8350380832294 8.81842232706231 8.85745795944052 8.89261655814969 9.16458363777404 9.01947207957092 8.82745032706509 8.75133684773532 8.49515479364706 8.51235991905476 8.43193589931582 8.3988437899767 8.39848434418901 8.475249554889 8.30099056237988 8.46853233803326 8.69204578119772 8.35616748934688 8.57040879627093 0.158314252437235 0.143637583052284 0.161923135171059 0.155261655616581 0.154822569379710 0.143685579459627 0.151179362633905 0.145895080399535 0.149666585224107 0.157113745476464 0.141510770530278 0.143905968881974 0.158303569433394 0.152524373865645 0.151713782569068 0.156577116302985 0.148230500366582 0.154174439134451 0.160240437505118 1 0|1 /|+ 19188943 19189930 19189214 19184440 19190200 + gene protein_coding_gene FALSE TRUE AT1G51720.1 glutamate dehydrogenase, putative similar to GDH2 (GLUTAMATE DEHYDROGENASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07440.1); similar to putative NADP-specific glutatamate dehydrogenase [Hevea brasiliensis] (GB:ABG21698.1); similar to Os01g0558200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043333.1); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase; (InterPro:IPR006095); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, dimerisation region; (InterPro:IPR006097); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, C terminal; (InterPro:IPR006096) 0.0448886896929386 0.541246313025466 0.59924389255978 1 -0.463880067685132 17.3789250889569 0.0448886896929386 0.0291446026429257
AT4G09290_at 2.36179481250201 1.71039199933786 2.26319031364592 2.13994045572562 2.02974732226893 1.93873576006705 1.83469678754462 2.01610890937305 2.22485707331752 2.67026463841158 2.35108802878733 2.37260084583508 2.40866376324785 2.41202823824146 2.36715944936161 2.05573848075830 2.22127212163383 2.4695713975051 2.08459778514122 0.147911229726357 0.150751180148927 0.153664771778383 0.144732784525016 0.151566357233990 0.147232116333455 0.151072637730164 0.156873719386873 0.149085289429911 0.148346764015519 0.154667724963579 0.152172905801693 0.145724971705399 0.144732784525016 0.146911719312881 0.144732784525016 0.148219161990390 0.145312260560523 0.149244297434104 4 0|4 /|- 5893397 5893669 5893603.5 5893341 5894966 - gene protein_coding_gene FALSE TRUE AT4G09290.1 similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G30640.1); similar to Y55B1BR.3 [Caenorhabditis elegans] (GB:NP_497198.1) 0.0589237303926864 0.541102160286183 0.599339893694152 1 -0.463956858475293 4.36624502320551 0.0589237303926864 0.119984380180005
AT3G23090_at 2.53089951337338 2.47311615284503 2.48014345999839 2.48827113260913 2.36015026479797 2.16495856087728 2.86699276966169 2.94988602348529 3.39968952389517 4.02031608880014 3.92378350372628 4.06815947381431 4.44570209308861 4.12726146373141 3.65136378443436 3.56118367775896 4.18430876882884 4.28250003113257 3.94949795170544 0.207014204009620 0.204537357755065 0.201726129264902 0.207920461906742 0.205701888902786 0.206290205559558 0.203360197203141 0.198835568107058 0.202583852609213 0.202631995982428 0.210021190302806 0.201925127253329 0.210858895440924 0.198835568107058 0.198835568107058 0.202396683528723 0.204356196041335 0.204437459924603 0.198955697530291 3 3|0 -|/ 8214547 8215586 8214969.889 8214315 8217087 - gene protein_coding_gene FALSE TRUE AT3G23090.1 similar to WDL1 (WVD2-LIKE 1) [Arabidopsis thaliana] (TAIR:AT3G04630.3); similar to seed specific protein Bn15D14A [Brassica napus] (GB:AAP37969.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) -0.0455722160865784 -0.540893245918961 0.599479038142116 1 -0.464068113805945 6.44948592022169 -0.0455722160865784 0.03806261251991
AT1G06170_at 0.794920675284757 1.10989960613792 1.12068271028519 0.975497261300072 0.970207895447991 1.13320493685188 1.11791508952773 0.933997359769792 1.07372028354253 1.33015689411731 1.37440206820166 1.24700226871545 1.20049037370338 1.19710954190837 1.33834988033669 0.959250696875845 1.37121830980895 0.911862380387396 1.07812084252852 0.164304343613419 0.166322065138719 0.16452864568685 0.175205213999248 0.167080036831017 0.165564935262815 0.169306719904744 0.167592114291224 0.173041830102298 0.163102228062865 0.167721095124002 0.165002391714753 0.166109195896494 0.177836395505675 0.174591171551771 0.164521719668413 0.167601036116823 0.17001783102844 0.167320890617159 1 0|1 /|- 1885152 1885668 1885386.3 1884980 1886896 - gene protein_coding_gene FALSE TRUE AT1G06170.1|AT1G06170.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G31220.1); similar to Os04g0599300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053749.1); similar to myc-like anthocyanin regulatory protein [Cornus cf. canadensis Xiang and Fan 20-1] (GB:AAS86284.1); similar to myc-like anthocyanin regulatory protein [Cornus unalaschkensis] (GB:AAS86299.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0500048507770006 0.540623917050442 0.599658445481908 1 -0.464211482466056 2.19985404018650 0.0500048507770006 0.0735603059269527
AT3G10240_at 1.42283689578733 1.46152253401388 1.77030985125246 1.40894774665651 1.1057582096641 1.40438870034911 1.17130694514985 1.59883674606656 1.88971969731477 1.78051748197118 1.33877606785459 1.11709102655692 1.86122064612238 1.62270683675865 1.32607712945799 1.80316793379966 1.46398157156890 1.44502349184767 1.18795098326214 0.209817780144207 0.209437497141595 0.212743170558097 0.209553544694589 0.215276659388666 0.214008620395424 0.203631041077346 0.214732639666993 0.223251743881580 0.212363652113821 0.203631041077346 0.207743507855107 0.208083210289257 0.209307158158919 0.207471500583818 0.206613995871572 0.211498690455270 0.209139627982659 0.210002695307422 3 3 + 3167335 3167827 3167615.273 3166703 3167872 + gene protein_coding_gene FALSE TRUE AT3G10240.1 F-box protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G47790.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0567075597303592 -0.540335916158366 0.599850321503128 1 -0.46436471601993 2.97631427470675 -0.0567075597303592 0.110000853141095
AT4G14980_at 1.00732363778334 1.15327294038872 1.40609335439956 1.17851199318983 0.78891023498729 1.11394830011966 1.00717112436338 0.998216048138165 1.47159865148324 1.40341260164128 1.21230921008096 0.885324621995059 1.27382502386598 1.17931548676462 1.09009353160645 0.995634265811627 1.22798934693452 1.11679998378781 1.03348726078555 0.188635440861406 0.191150747466403 0.18306938306995 0.186161654281199 0.189157379669451 0.183248254206334 0.189479716429554 0.185894048648659 0.184736854415345 0.200369095792784 0.187101110747153 0.187648553934090 0.191667858360219 0.187063314974229 0.203238755026010 0.188311556485021 0.187043312716765 0.205293927068130 0.186171161461460 4 4 - 8561980 8562465 8562172.727 8561873 8563635 - gene protein_coding_gene FALSE TRUE AT4G14980.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G54040.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54020.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G54050.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain Protein kinase C, phorbol ester/diacylglycerol binding; (InterPro:IPR002219); contains InterPro domain DC1; (InterPro:IPR004146) -0.0499006855542295 -0.540144508914692 0.599977861105428 1 -0.46446651339379 2.29442809008419 -0.0499006855542295 0.0731807255418095
AT2G32850_at 6.64859993397379 6.60799497122069 6.75378505903295 6.76704779662301 6.90704889537173 6.55521844116673 6.72665135480728 6.43909244154809 5.72495311804166 6.3928825271366 5.81676085326027 6.40894939711418 6.11887924066258 5.77646311334373 6.00719461822725 6.06438756681653 6.3063430111024 6.4791810121251 6.36480475159015 0.191270625463339 0.184328070426776 0.200011031220077 0.184733570026150 0.187403686417300 0.200228610239364 0.193471319482346 0.194324497043818 0.194263790524593 0.189692543348939 0.204249995095475 0.192095817876517 0.206891019329836 0.192253812930059 0.196219463774871 0.187864214483573 0.200736983747469 0.196259091584474 0.189744329949059 2 2 - 13942533 13943091 13942796.818 13942263 13945922 - gene protein_coding_gene FALSE TRUE AT2G32850.1|AT2G32850.2 protein kinase family protein similar to ATPK3 (Arabidopsis thaliana serine/threonine protein kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT5G08160.1); similar to cyclin G-associated kinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34080.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0507900459932549 0.539608971139596 0.600334778283953 1 -0.464751151089434 12.8172548536369 0.0507900459932549 0.0789818642414797
AT2G35630_at 5.98043025707052 6.29191965860344 6.30634769227449 6.05689023570599 6.05349675824685 5.81533013417959 6.40212641771334 6.36369892346452 6.04329105340261 6.60649728090796 6.86981326833928 6.92049825112764 6.30657328575608 6.75743578790597 6.7808243351767 6.6529081114558 5.67408987498182 6.20718010838078 6.61548911502716 0.215181775173885 0.212422264087331 0.204626993778438 0.211551911623535 0.205792195504792 0.216741919619542 0.206529742663054 0.216584933135856 0.217581360309337 0.207978290771871 0.200433750531760 0.204670915981377 0.200433750531760 0.214714535836072 0.214574942968547 0.201153303335767 0.234589548578129 0.210540444843190 0.210699945101047 2 2 + 14986615 14987372 14987087.636 14973757 14987685 + gene protein_coding_gene FALSE TRUE AT2G35630.1 MOR1 (MICROTUBULE ORGANIZATION 1) Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28155.1); similar to PREDICTED: similar to colonic and hepatic tumor over-expressed protein isoform b isoform 2 [Rattus norve (GB:XP_001068589.1); similar to PREDICTED: similar to colonic and hepatic tumor over-expressed protein isoform b isoform 4 [Canis familiaris] (GB:XP_861459.1); similar to microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] (GB:BAB88648.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0510606904999802 -0.539424577915495 0.600457695304833 1 -0.464849094184845 12.6302422734922 -0.0510606904999802 0.0806989140349635
AT1G03070_at 1.81035547475504 2.41153501062577 1.67250630118651 2.27678508674484 2.85099768942695 1.96053011239516 2.38835996002744 2.44476159769195 2.72344264612556 2.75917629784497 2.58445470799924 2.42798488373453 2.86111927300716 2.85016793173108 2.44899694161555 2.80899608756053 2.08939407734430 2.86980082327347 2.64368219415838 0.220691737432131 0.217117343382695 0.221952151222469 0.218174262555963 0.222855851667427 0.219890116525806 0.217347272381530 0.215492150758962 0.226889187454952 0.220787744877026 0.210894699785363 0.21672148225739 0.217892728998448 0.210124318836712 0.232348524197812 0.215066614378434 0.215051683978287 0.222940362727416 0.223027722514052 1 1|0 +|/ 730375 731298 730783.125 729935 731557 + gene protein_coding_gene FALSE TRUE AT1G03070.1 glutamate binding similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT4G02690.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) -0.0823504592982108 -0.539154557938969 0.600637714810941 1 -0.464992462131373 4.89016959751981 -0.0823504592982108 0.213544359891165
AT1G54440_at 6.52294815317596 6.41041356838496 6.56299131261942 6.40173416967049 6.70588176780412 6.14335001956644 6.50733617799963 5.73552335424987 5.39080286426063 5.79668551746723 5.32444262898879 6.26168060607831 5.70712764196606 5.56237433663264 5.53197905329243 5.69808499751646 5.88344955471794 5.63110840600148 5.96878189107212 0.208410726760521 0.210647468594539 0.215092404940092 0.215298035786081 0.208410726760521 0.208678823651989 0.208581327742847 0.213589648625979 0.212413168577273 0.211402160498380 0.208721866478312 0.217964818684758 0.208410726760521 0.216389030432648 0.209531768931881 0.211440249337612 0.229139922344035 0.216000606322855 0.208410726760521 1 1 + 20330498 20331574 20331246.545 20326720 20331734 + gene protein_coding_gene FALSE TRUE AT1G54440.1 3'-5' exonuclease/ nucleic acid binding similar to 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35910.1); similar to Nucleolar protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53938.2); contains InterPro domain HRDC; (InterPro:IPR002121); contains InterPro domain 3'-5' exonuclease; (InterPro:IPR002562); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.0703540747558928 0.539058301778653 0.600701894530236 1 -0.465043553253754 12.0831661458085 0.0703540747558928 0.168744262004835
AT3G09960_at 2.74352641793621 3.10458779639814 3.24509439522032 3.16471097778777 2.25760721111196 2.57405657067101 1.88044612371890 2.46362179868273 2.49079833715365 2.38585573862360 2.54575292834568 2.19880034042001 2.18711698626268 2.09888050465452 2.44338067532172 2.39070373529899 2.18843253192874 2.25669767114895 2.40885862177549 0.224710454461931 0.223382417503539 0.231144449064012 0.232957409663702 0.230001117164 0.232292209878217 0.239417271544497 0.231473664406294 0.225910673085738 0.228231511760368 0.22987723603102 0.221648873932064 0.23424099420666 0.227279728702548 0.23473477742519 0.223062017908407 0.228648802996233 0.226140198581453 0.221648873932064 3 3|0 +|/ 3062410 3063430 3063067 3061957 3063599 + gene protein_coding_gene FALSE TRUE AT3G09960.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT3G09970.1); similar to ACI14 [Lycopersicon esculentum] (GB:AAY97872.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0612690968344234 0.539046882055153 0.600709508975574 1 -0.465049614076035 5.037818863536 0.0612690968344234 0.131460150165134
AT1G60970_at 2.05575134613302 1.92218662188343 1.96849529439616 2.19386296577739 1.34693967105237 2.01781124607765 1.58704017913183 2.62946894461600 1.42077661342078 1.93366496162662 1.65508922947589 1.70846739885818 1.66687139525319 1.69568619764939 1.16211829949247 1.82764904431173 2.38274920460530 1.73583624124179 1.83648226080013 0.255090403172383 0.258139749269091 0.25554061304688 0.258912576193946 0.260237930213652 0.253872792701582 0.264604815384712 0.263080609693177 0.262754347457105 0.263420856273381 0.266149066147240 0.257099273103301 0.255729811086368 0.262516482981487 0.253872792701582 0.253872792701582 0.258047600909295 0.261411113449665 0.253872792701582 1 1|0 -|/ 22451701 22452559 22452152.125 22451513 22453124 - gene protein_coding_gene FALSE TRUE AT1G60970.1 clathrin adaptor complex small chain family protein similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT3G09800.1); similar to nonclathrin coat protein zeta1-COP [Solanum lycopersicum] (GB:BAA92781.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) -0.083917023768347 -0.538997547209904 0.600742405045631 1 -0.465075796305468 3.69500269445523 -0.083917023768347 0.219264870432169
AT3G57130_at 1.60140148585227 1.26378618877761 1.42061155340137 1.55837657553997 1.34242193426284 1.41119385119503 1.39123599991908 0.56967958124548 1.66391998669515 1.36155722431555 1.54616889267065 1.37524767325848 1.46229838608909 1.16818111445967 1.45552693697956 1.38197722672932 1.46580146091648 1.43048266026303 1.48376826103669 0.190818656409383 0.194088985380563 0.200093772435522 0.197216578163047 0.195150943207825 0.196444975433111 0.201741569775204 0.194521167443872 0.195808941864404 0.195085092440869 0.196912901943403 0.192377208489759 0.20012262403956 0.194771916180709 0.199343360919572 0.193473695130337 0.195418286525727 0.194032912978431 0.196031836531340 3 3 + 21160431 21160874 21160612.364 21158814 21161006 + gene protein_coding_gene FALSE TRUE AT3G57130.1 BOP1 (BLADE ON PETIOLE 1); protein binding ankyrin repeat family protein / BTB/POZ domain-containing protein, contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain. Lines carrying recessive mutations exhibit a number of visible defects, most pronounced being ectopic outgrowths of in leaf petioles of rosette leaves. similar to BOP2 (BLADE ON PETIOLE2), protein binding [Arabidopsis thaliana] (TAIR:AT2G41370.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28327.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.0671269422780894 0.538956955391272 0.600769472034896 1 -0.465097336873852 2.77673458024249 0.0671269422780894 0.156003554657925
AT3G55010_at 4.61228560284366 4.63049454087574 5.31206582150042 4.67499517990795 4.38283283918103 3.80759854348122 5.26598134733055 5.85365726872531 4.44928547587347 4.59546837796293 4.79608958849581 5.17665533952943 4.86216065081989 4.91667600359007 5.80755522296077 4.5938308107961 4.34338210191789 4.6323148862577 4.4293709022216 0.221424075001053 0.216631340112548 0.223248146561480 0.230555182320198 0.219925013680826 0.217549959304564 0.218445322664759 0.228344474191313 0.228901760845946 0.223612816135137 0.216631340112548 0.217616564137538 0.216631340112548 0.223499090397048 0.218699570740359 0.218413820630360 0.229458881921167 0.222918192922161 0.221661503979926 3 3 + 20398805 20399463 20399118.273 20397596 20399783 + gene protein_coding_gene FALSE TRUE AT3G55010.1|AT3G55010.2 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinean=midine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)| Identical to Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast precursor (EC 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) (PUR5) [Arabidopsis Thaliana] (GB:Q05728;GB:Q9M2W5;GB:Q9SV49); similar to 5'-aminoimidazole ribonucleotide synthetase [Solanum tuberosum] (GB:AAR06290.1); contains InterPro domain AIR synthase related protein, C-terminal; (InterPro:IPR010918); contains InterPro domain AIR synthase related protein; (InterPro:IPR000728); contains InterPro domain Phosphoribosylformylglycinamidine cyclo-ligase; (InterPro:IPR004733) -0.0732617185331029 -0.53887999273111 0.600820793156941 1 -0.465138173889972 9.50871789009671 -0.0732617185331029 0.180047393864832
AT1G14680_at 1.72594236418990 2.03100224571603 1.61186717715924 1.63967983008139 1.84608311789199 1.54424399965413 1.5064543098232 1.74311082856400 1.77013232248955 1.80265588213452 1.50299023132059 1.91964083737710 1.92812440786038 1.95971023880293 1.74704158704824 1.46210441769369 1.98899028592829 1.78837279055435 1.8255082235493 0.185002410069280 0.1851748704543 0.187937882275775 0.179432226506122 0.185625245775548 0.18107103476766 0.181583953577084 0.184317294620847 0.187364339869418 0.184475244988109 0.1842060952931 0.181359403434862 0.182538233071358 0.187029109495146 0.184427158772739 0.195604709494736 0.183774557379103 0.185314312663380 0.190974807886920 1 1 + 5041155 5041626 5041391.364 5040856 5041728 + gene protein_coding_gene FALSE TRUE AT1G14680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09060.1); similar to hypothetical protein MCAP_0860 [Mycoplasma capricolum subsp. capricolum ATCC 27343] (GB:YP_424802.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079) -0.0517345995139255 -0.538822459162592 0.600859159828351 1 -0.465168698074738 3.49932498028381 -0.0517345995139255 0.0849464401662242
AT4G03950_at 0.0164962027921587 0.53681853119857 0.143163519559740 1.02723359546713 0.466607571729971 0.484128598622143 0.696557260215466 0.529969388775490 0.664663152300177 0.783939851276633 0.195316471382812 0.616907682931378 0.568935372341387 0.466967850809294 0.357576994602037 -0.171709000982854 0.786937188819155 0.72594996607219 0.576501613630176 0.290621788464636 0.280663677038217 0.290649633045149 0.280663677038217 0.283225371220944 0.293739367672722 0.28271603419456 0.280663677038217 0.285007873474633 0.288931967983731 0.284274252471009 0.290337310756236 0.291589170730703 0.280663677038217 0.294245098309426 0.295542410806033 0.280663677038217 0.290689542391074 0.283763857630739 4 4|0 +|/ 1880360 1880682 1880582.167 1879516 1881109 + gene protein_coding_gene FALSE TRUE AT4G03950.1 glucose-6-phosphate/phosphate translocator, putative similar to GPT2 (glucose-6-phosphate/phosphate translocator 2), antiporter/ glucose-6-phosphate transporter [Arabidopsis thaliana] (TAIR:AT1G61800.1); similar to glucose 6-Pi/Pi transporter [Thellun (GB:ABJ98060.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.0731757905280396 -0.538580768606097 0.60102034672098 1 -0.465296892333851 1.04681942761971 -0.0731757905280396 0.179874796540056
AT2G30670_at 0.373704320012548 0.693986575860221 0.540219626908938 0.53015631590948 0.424124631328179 0.406508013439273 0.512991109756236 0.515214630778798 0.324123697975943 0.905020471852569 0.91929072402258 0.336740905295173 0.373420902726689 0.623547091700569 0.607347550810435 0.741190842336032 0.411263355943729 0.691345497306061 0.672022546364835 0.216304072660439 0.213235602928852 0.213235602928852 0.213235602928852 0.218145327726027 0.222018421944122 0.214183482766164 0.221888021906443 0.215614634229582 0.219195337426222 0.223904771649305 0.214577663684736 0.223218808525275 0.228345221952024 0.221899091187055 0.219675945710416 0.235431344228788 0.219111724971877 0.229408275622426 2 2|0 -|/ 13076393 13077667 13077087.2 13076390 13077981 - gene protein_coding_gene FALSE TRUE AT2G30670.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29330.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.0472129460844702 -0.538041287600668 0.601380214819287 1 -0.465582840699848 1.11048345174860 -0.0472129460844702 0.055538761648992
AT3G10040_at 2.10247019885767 1.61379514492784 1.98040991982831 1.68556818977405 1.8516047003319 2.59985046070193 2.14064468892971 1.95506453032054 2.31473206751939 2.50239038323568 2.6164959337962 2.50910359187962 2.74063172665194 2.54304060246039 2.70112789987065 2.31244177998336 2.23503975946221 3.08258173007248 2.77254932001525 0.197744597425339 0.197298316411773 0.19840673023999 0.201456846786865 0.194368041795044 0.201257276814665 0.199792995232766 0.198093051709214 0.195079933524856 0.194762095711562 0.194368041795044 0.194368041795044 0.210474072041571 0.194368041795044 0.198049418890242 0.201166954047276 0.196513575751257 0.197714695094824 0.20087507564366 3 3 - 3096594 3097134 3096938.455 3096420 3098076 - gene protein_coding_gene FALSE TRUE AT3G10040.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G21200.1); similar to Homeodomain-like [Medicago truncatula] (GB:ABE80120.1); similar to Homeodomain-like [Medicago truncatula] (GB:ABE89088.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.06951598233272 0.538011336916427 0.601400197084527 1 -0.465598707934674 4.55240021334843 0.06951598233272 0.165992412241103
AT3G17380_at 1.61178670976954 2.22095317000924 1.05621893416992 1.29042904770859 1.14684909561257 1.18250816939334 1.47830501183203 1.86504747457661 1.83742293633647 1.66960995759947 2.20524583825995 3.02343458630228 1.91062256553702 2.04330442047876 2.85786831163788 2.23200589733268 1.65498788636281 2.16567075040446 1.76963386056475 0.204799796158014 0.203891411417707 0.213335781745213 0.203514039375839 0.212799266522217 0.216591077627504 0.203011764739687 0.200755040526602 0.220006831646195 0.210243363821053 0.203958374852456 0.204963254961306 0.203237564215428 0.211723637881592 0.200755040526602 0.211462014133294 0.210644283724972 0.203407456888187 0.204559686567294 3 3 + 5951379 5952100 5951717.182 5950206 5952241 + gene protein_coding_gene FALSE TRUE AT3G17380.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G22080.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.0611340829765848 -0.537923532785446 0.601458779537339 1 -0.46564521988674 3.49177792673717 -0.0611340829765848 0.131428090875872
AT2G22760_at 0.876291883458012 0.574981677724775 0.40375111874912 0.751167111862487 0.515759347184229 0.528598217225449 1.04253686290252 0.251851064448486 0.197704810989122 0.638862975250641 0.642088924106481 0.471248571824629 0.549815817939398 0.682852627221075 0.666224655541496 0.351100871084835 0.817417609682436 1.05460211859276 1.12223400682651 0.218450770113574 0.222099827801239 0.224796512913007 0.222019243776626 0.221512828596854 0.225141993728289 0.215197482760577 0.227207763065139 0.234487554658826 0.22385172001379 0.215197482760577 0.217726904669578 0.236658627488515 0.224245897614041 0.222620697901978 0.220694569402295 0.227814751239071 0.229556254374000 0.220744887617936 2 2 + 9685409 9686009 9685725.5 9684960 9686444 + gene protein_coding_gene FALSE TRUE AT2G22760.1 basic helix-loop-helix (bHLH) family protein similar to NAI1, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G22770.1); similar to symbiotic ammonium transporter; nodulin [Glycine max] (GB:AAC32828.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.0675557274505393 -0.537803565798131 0.601538825635686 1 -0.465708757685475 1.271793575705 -0.0675557274505393 0.158308092938757
AT1G62340_at 0.867934176976644 0.799227709105014 0.929511201730613 1.17803437783996 1.04506404210889 0.854410427249145 0.969383243611452 0.93465826493889 1.45230980949610 1.61808453669535 1.17533729191843 1.00153683713512 1.28409171479870 1.06895083026081 1.08575012165883 1.47652162175217 1.10261985051954 1.70807745610333 0.686815083616848 0.194368071022041 0.197336406487618 0.194112929796196 0.19635016609574 0.19260906854721 0.196357312597174 0.190422704299554 0.198706428337572 0.195906338891732 0.190422704299554 0.201538327568433 0.190422704299554 0.196203235937079 0.202482160011482 0.197791222489099 0.19371310287296 0.205422405753920 0.201475168995950 0.196476716717795 1 1|0 -|/ 23054973 23055468 23055232 23054667 23059337 - gene protein_coding_gene FALSE TRUE AT1G62340.1 ALE1 (ABNORMAL LEAF SHAPE 1); subtilase Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plants similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G19170.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Protein of unknown function DUF1034; (InterPro:IPR010435) 0.0472058679115426 0.537560462325549 0.60170104947411 1 -0.465837470896342 2.19240985983898 0.0472058679115426 0.0558189079731365
AT1G29962_at 2.97052697195646 2.74587088698657 2.91030919810588 3.04641260381282 2.16185436132809 2.77494745791103 2.77199157435737 2.88057733046182 3.07522898758090 2.29330983738107 2.88591573584196 2.83465095444420 3.23146091245164 2.75909592915031 2.88086235316645 2.43381455206291 3.3412501426289 2.79002852090203 2.61175754695404 0.186814112420052 0.199417514113304 0.193455326885329 0.188121782290247 0.196057536689305 0.187480993816765 0.187806771851071 0.186814112420052 0.189106523309669 0.202543145540591 0.189674391795864 0.186814112420052 0.196205632986289 0.189808516212116 0.202949644484293 0.186814112420052 0.186877770752102 0.186814112420052 0.186814112420052 1 1 + 10496820 10497208 10497070.571 10496714 10497271 + gene protein_coding_gene FALSE TRUE AT1G29962.1 AGL64; transcription factor similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G28460.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25164.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.0578376556456416 0.537157010741226 0.601970323959949 1 -0.466050960487755 5.56017813722486 0.0578376556456416 0.116945587065061
AT3G49050_at 3.98251779546743 4.83867861228537 4.83290798447236 4.21626403607047 5.20088373911098 4.81521742957255 4.82884726801104 5.06429283669273 5.17980757964606 5.11306508375639 5.51204220920983 5.42857903151792 5.1475359683347 5.70569641298301 4.69907465748448 5.50753317595547 4.61543895319333 4.75143589369502 5.01542828843852 0.263019033783346 0.247257288156506 0.260351805769272 0.268963497810367 0.247395070587247 0.278884126062629 0.247253703053293 0.249088296715967 0.268670140172819 0.249177230967370 0.254513817451353 0.249706951653393 0.247253703053293 0.247409235464912 0.247432092208014 0.25648514593794 0.271387725351743 0.266170933139491 0.247253703053293 3 3|0 +|/ 18193729 18194554 18194201.3 18191953 18194737 + gene protein_coding_gene FALSE TRUE AT3G49050.1 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative similar to lipase class 3 family protein / calmodulin-binding heat-shock protein-related [Arabidopsis thaliana] (TAIR:AT4G00500.2); similar to calmodulin binding heat shock protein [Gossypium hirsutum] (GB:AAV73918.1); similar to calmodulin-binding heat shock protein [Gossypium hirsutum] (GB:AAV65493.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921); contains InterPro domain Lipase 3, N-terminal; (InterPro:IPR005592) 0.0779421115210885 0.536958879805867 0.602102584629698 1 -0.466155747607128 9.85929322358222 0.0779421115210885 0.198631342639307
AT2G10850_at 1.51686589847253 1.65810266685289 1.69063130232128 2.04154999603244 1.42396125172791 1.91002252888834 1.64936586970618 1.62714352967608 1.93562919052397 2.47268102127501 2.02469988985669 2.10828283374829 1.83981094008189 1.98816864711763 1.94840617669716 1.62774559106703 2.16192635029163 2.15715026166451 1.66477778393394 0.226098264855457 0.230065656532277 0.228589250609274 0.228731478736019 0.222754734505574 0.227546138715803 0.233176427741611 0.230522945358804 0.228802468152421 0.226778388153015 0.231488893034286 0.231880066384452 0.225921264111779 0.227169535498296 0.235734667486020 0.230705073204802 0.228248784322515 0.236370026029133 0.226394483305946 2 2 - 4283699 4284250 4283941.273 4283406 4284587 - gene protein_coding_gene FALSE TRUE AT2G10850.1|AT2G10850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43970.1); similar to envelope-like [Glycine max] (GB:AAC24322.1) 0.0556664748184366 0.536949780253822 0.602108659320063 1 -0.466160559284243 3.69289863123966 0.0556664748184366 0.106655760104008
AT1G27930_at 9.44349891956441 9.89653972902016 9.24110399131473 9.27480846422903 9.88173229779682 9.34519153930645 9.59139555908716 9.61735630642511 8.48372083670796 8.25114685740468 8.38555488254315 8.88479119558431 8.8602633904471 8.66639026875804 8.3238676395418 8.77920364265929 8.55704594518174 8.50142282543685 8.16736371220508 0.189777262071732 0.190181687132155 0.203568969018768 0.196326707241502 0.193640363915623 0.196476514216298 0.194099421807482 0.192685202042451 0.214840950522402 0.204553475591408 0.195656522174288 0.193643090176882 0.189777262071732 0.194918479166250 0.201045529582238 0.189777262071732 0.208296102435986 0.199217556026168 0.197465058347320 1 1 - 9731518 9732055 9731744.182 9731252 9732706 - gene protein_coding_gene FALSE TRUE AT1G27930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67330.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) 0.0587925581503388 0.53636814360249 0.602497014535985 1 -0.466467958324893 17.9967339887805 0.0587925581503388 0.121746374359740
AT4G10730_at 5.33978592958812 5.14377405333262 5.27825555408633 4.81322097115035 5.83632397273729 5.44547693506202 5.86577871385347 4.82448724063239 4.65193540753027 4.06813753263669 4.61467638241792 4.51485298798746 4.90274175850539 4.4759406628777 4.54961374897421 4.43789280457508 4.26134411088602 4.93623228235898 4.70177481571578 0.223290653308821 0.215244676654425 0.216479873756377 0.222181979548233 0.224470883873003 0.220471325988863 0.216922910387495 0.215244676654425 0.215244676654425 0.225328775640019 0.216510946543902 0.223342158769076 0.220200543621989 0.223647801677368 0.215517983801569 0.216575425336449 0.232077565163975 0.215244676654425 0.218166768396148 4 4|0 -|/ 6609789 6611156 6610444 6609420 6614877 - gene protein_coding_gene FALSE TRUE AT4G10730.1 kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G24100.1); similar to putative Ste20-related protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAG13441.1); similar to Os03g0114300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048743.1); similar to Os10g0518800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065076.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0812877321346376 0.536127117644378 0.602657983867628 1 -0.466595249998620 9.8486934684472 0.0812877321346376 0.211362533619015
AT1G09180_at 4.74585264686439 4.99453017294339 4.90111687084124 5.03239774183381 5.26636131847318 4.7388548070269 6.28694760749611 5.97716961174598 4.25289346960211 5.00461809308919 5.64639379661201 5.21722019382172 5.24808797557045 5.70624466400731 5.07667010310737 5.52232726636868 5.1860802554619 4.91759035678523 4.79273076768785 0.232400373529463 0.222641743030440 0.229119160837479 0.231952766999295 0.222641743030440 0.229731492966677 0.229891481187007 0.240494253466896 0.241083035698814 0.222641743030440 0.222641743030440 0.222641743030440 0.235711469856670 0.227040606527604 0.241542558554927 0.225134357601626 0.240082694741045 0.232293924334151 0.231283735639297 1 1 + 2965166 2965872 2965622 2965025 2965974 + gene protein_coding_gene FALSE TRUE AT1G09180.1 ATSAR1/ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1); GTP binding A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. similar to SAR1 (SECRETION-ASSOCIATED RAS), GTP binding [Arabidopsis thaliana] (TAIR:AT1G56330.1); similar to GTP-binding protein SAR1A (GB:O04266); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.057610195560884 0.535902112325785 0.602808273777335 1 -0.466714032001693 10.2421493154497 0.057610195560884 0.116513568944995
AT2G22920_at 1.23640494753304 1.12341699014452 1.35950990548803 1.01417784688452 1.15577720112935 1.34999190355899 0.96222341948104 1.32456795291054 1.66105556538598 1.35441491661755 1.54334071852073 0.723610528518312 1.28913028535499 1.37413094173269 1.18394969311872 1.04103184591341 1.46321683731870 1.39657876423650 1.23428143283206 0.181521960804886 0.181472617071397 0.181169553779214 0.177555891529672 0.179002696979189 0.186730419321252 0.177555891529672 0.182847149939724 0.187839372350390 0.182683106192039 0.181689981201238 0.179142749970966 0.200816877446018 0.188715157451821 0.180437546128809 0.181929578754648 0.191078859407185 0.188117407450209 0.180698119530023 2 0|2 /|+ 9763064 9764474 9763648.111 9761018 9764680 + gene protein_coding_gene FALSE TRUE AT2G22920.1|AT2G22920.2 SCPL12; serine carboxypeptidase similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.1); similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.1); similar to SCPL11, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22970.1); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.0532496915123338 -0.535715276067124 0.60293308372108 1 -0.466812628471935 2.52498760761681 -0.0532496915123338 0.0949490589674765
AT4G17080_at 7.7375294200195 7.97542264601403 7.50479723720774 7.32354609484997 7.8952796769079 7.92548235624319 6.4327591047156 6.84023849936739 7.30716833736201 6.85899728362539 6.19478068638557 6.27371562367084 6.1155661206613 6.58541481979213 5.97908456229117 6.7592702181953 6.84807105416929 6.21976304637553 6.50849115839638 0.196159597203756 0.189588078559745 0.192011714222409 0.194919721720308 0.18815411817052 0.189790266587606 0.191129314969474 0.191319584020745 0.194130441603412 0.187724390993131 0.202901087677812 0.200306683219330 0.193964232543280 0.192002835873508 0.198849943418626 0.187724390993131 0.197752529902784 0.198062409010999 0.189575526080265 4 4|0 +|/ 9602607 9603807 9603413.2 9601587 9603831 + gene protein_coding_gene FALSE TRUE AT4G17080.1 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related similar to MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related [Arabidopsis thaliana] (TAIR:AT2G35170.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66263.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66264.1); similar to Os10g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065416.1); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.0519025347894408 -0.535653001716474 0.602974687048246 1 -0.466845484421224 14.0861371425343 -0.0519025347894408 0.0876273397597792
AT1G16880_at 10.7206255526012 10.5554507077393 10.8360247136051 10.6417283922746 10.4014450380112 10.280304150102 10.9333001290628 11.0176871396368 10.8052551742520 10.8765322916463 11.1796728274354 11.2824227010808 11.1811260304438 11.0089234661762 11.1305656244574 11.3847555960819 11.0949993010847 10.7913416611669 10.6339973402743 0.0938950603811497 0.0927586620960099 0.095535847479119 0.095899335293624 0.0909106727058285 0.0991961996298079 0.0962127309297252 0.093114167637119 0.112668483836245 0.0949896604069572 0.0914624216465144 0.0926811264097414 0.0938057424039628 0.104530019193726 0.095644840663625 0.0937013076594599 0.0940722750716842 0.0917476912893705 0.095515208185803 1 1|0 +|/ 5774565 5776085 5775346.714 5773585 5776301 + gene protein_coding_gene FALSE TRUE AT1G16880.1|AT1G16880.2 uridylyltransferase-related similar to ACT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G04740.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58487.1); similar to Os08g0242700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061342.1); similar to Os12g0152700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066177.1); contains domain Regulatory domain in the aminoacid metabolism (SSF55021) 0.0464536617524498 0.535615047561186 0.603000043623111 1 -0.466865507264763 21.6251478127367 0.0464536617524498 0.0509939188967868
AT2G14020_at 2.48067846006565 2.20773987888225 2.44477303755506 1.95929791594160 1.98805614597716 2.11680164929291 2.3051755106614 2.08501855461071 2.80985445394862 2.20758252757913 2.28127614412206 2.31294118150585 2.46277726364324 2.62958415331542 2.49049562736770 2.11407885021681 2.91438346244837 2.71494020996598 2.35763557094373 0.193481668644188 0.194317743350478 0.187343454963885 0.194064481487107 0.214215771686168 0.188501365931453 0.201887101726362 0.188003285893850 0.200172099324789 0.196259176516753 0.193651744214567 0.191482793316422 0.195731678073249 0.195675499780009 0.192034797762023 0.187373601921711 0.199138561543883 0.193244875852655 0.193819747774063 2 2 - 5900936 5901295 5901093.4 5900869 5901354 - gene protein_coding_gene FALSE TRUE AT2G14020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44880.1) -0.055359409890317 -0.535254536365018 0.603240922829108 1 -0.467055629330495 4.67265120865518 -0.055359409890317 0.106005842094606
AT4G15100_at 0.695347104163451 1.32082381123852 1.02178830727677 1.25383965254507 0.807042029388787 1.16065115556637 0.75767745939169 1.05947748866900 1.0218986086381 1.00204224918435 1.28275760151792 1.08752384687376 0.700841074653708 0.998361237214954 1.04948177213772 0.928256704724793 0.678229577584635 0.839068382682539 1.49811930268824 0.213117133703739 0.212114743856854 0.213108957206769 0.210018298131600 0.217485897231536 0.213540110666364 0.211598956071559 0.210018298131600 0.213592585447869 0.211723192766063 0.210018298131600 0.213422687033760 0.21306805814295 0.210018298131600 0.214371458385748 0.210253651716319 0.214403497436319 0.213875586024153 0.212299204774344 4 4|0 +|/ 8627943 8629483 8628824.1 8626265 8629528 + gene protein_coding_gene FALSE TRUE AT4G15100.1 SCPL30 (serine carboxypeptidase-like 30); serine carboxypeptidase similar to SCPL31 (serine carboxypeptidase-like 31), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G11080.1); similar to Os05g0158500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054710.1); similar to Os01g0332800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042933.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE89060.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.0629781042506126 -0.535228734483545 0.603258164514177 1 -0.467069231778833 2.06937341511861 -0.0629781042506126 0.140717131965721
AT4G13030_at 5.74391544926848 5.71280860853683 5.67424086018738 5.35855965676987 5.85556479971165 6.17643208924144 5.4228423015679 4.79954689247509 3.73970565509293 4.18807748731605 3.57568985190036 3.45891284371116 4.04146724104848 3.31880809744778 3.26621344645499 3.41518387996949 4.32236496937048 3.82477832213563 4.43721896624263 0.374584074227189 0.388867326815732 0.366283259389400 0.366283259389400 0.375931097366329 0.379859199860435 0.366283259389400 0.383698281354887 0.380632358260210 0.380534972000288 0.378843315986262 0.366283259389400 0.381036911217330 0.367774312478288 0.366283259389400 0.366283259389400 0.391442723028544 0.387829451646882 0.380573437879955 4 4 + 7608767 7609622 7609304.5 7607264 7609840 + gene protein_coding_gene FALSE TRUE AT4G13030.1|AT4G13030.2 similar to hypothetical protein S250_18C08.34 [Sorghum bicolor] (GB:AAS82599.1); similar to Os05g0274300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055071.1); contains domain ATP_GTP_A2 (PS50101); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.0611594997651155 -0.53467302814823 0.603629567646922 1 -0.467362043239608 9.4802861827475 -0.0611594997651155 0.133159378244024
AT1G72460_at 2.39044024385716 2.24449298307727 2.42832457354828 2.52572861295737 1.99281546428906 2.74331948163180 1.98660950711151 2.27880550962929 2.67452587148474 2.26016079972220 2.59959524778841 2.0482436468499 2.6176331150131 2.67293538276758 2.26337676795815 2.34205963765917 2.08254978206689 2.47331742591960 2.43994579794292 0.203121845730033 0.204402209030472 0.214126440398712 0.203424364412185 0.202132317681547 0.206172834176534 0.203134055803565 0.203244921191219 0.204057496212777 0.20505595131704 0.203930350247629 0.209119472639003 0.204126367400913 0.205225593029843 0.202872778924813 0.202464027801623 0.217342717009308 0.202132317681547 0.202132317681547 1 1 + 27284611 27285160 27284855.636 27283172 27285195 + gene protein_coding_gene FALSE TRUE AT1G72460.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G42880.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90954.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0633565124453597 0.53458377157482 0.603689232711587 1 -0.467409047309506 4.74665439641412 0.0633565124453597 0.142643967280731
AFFX-r2-Bs-thr-M_s_at 4.17193520417391 4.95642456597772 6.09255492465876 4.74363977201136 7.19439919465096 4.48282509727028 7.04863343145918 4.91067135159296 7.01043239932437 7.64110171847479 6.57097827912418 7.32119548604643 6.60690867384642 6.86342828824239 6.06215812655803 6.9432538429192 6.4149452621888 6.53998002671656 7.7151138500089 0.226481060862023 0.218120449101077 0.224255350716292 0.229636316080651 0.216191068306723 0.226894740360258 0.219578959117445 0.224949701172835 0.236123670624994 0.219127545902872 0.222082112082993 0.212264382719995 0.212794850036254 0.223764862882508 0.219717240791749 0.221138735958194 0.222094295321322 0.216075861359805 0.22014713780175 NA NA NA NA NA FALSE FALSE -0.216877357775270 -0.534497393944963 0.603746976181902 1 -0.467454528216467 12.5105881031284 -0.216877357775270 0.655749577586962
AT4G04640_at 13.2208792886388 13.2303165959004 13.0821187212081 13.0175222501622 12.9760879758967 13.0920364477675 13.5370265718145 13.5678702961843 13.7403635657685 13.6771197858677 13.9358103806972 13.9376372735337 13.9038250184376 13.8641880596770 13.9694785839149 13.8993647325902 13.8507801760546 13.9337733475992 13.5406863728814 0.0622172120207658 0.0614733672421311 0.0608967390703537 0.0606549263963732 0.0606594127428452 0.0618220573548112 0.0633841078278665 0.0606549263963732 0.0635532177432934 0.063906899110362 0.061617969767423 0.0606549263963732 0.0607154319067957 0.063055789419148 0.0650898755894267 0.0606549263963732 0.064745124885418 0.0638423993638753 0.0651080107390871 4 4 - 2350774 2351310 2351048.636 2350496 2352016 - gene protein_coding_gene FALSE TRUE AT4G04640.1 ATPC1 (ATP synthase gamma chain 1) One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase. Identical to ATP synthase gamma chain 1, chloroplast precursor (EC 3.6.3.14) (ATPC1) [Arabidopsis Thaliana] (GB:Q01908); similar to ATPC2 (ATP synthase gamma chain 2) [Arabidopsis thaliana] (TAIR:AT1G15700.1); similar to ATP synthase gamma chain, chloroplast precursor (GB:P29790); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) -0.0439739421593557 -0.534383641208458 0.60382302424625 1 -0.467514412498694 26.9977724874810 -0.0439739421593557 0.0236377406383524
AT1G06990_at 0.774401254986986 0.974608819618226 1.21754471336883 1.13896434437230 0.786136566200434 1.23546309834337 0.850477027034407 0.971520204945982 1.43308406717120 1.54833892896878 1.42048952662473 1.10239504427816 1.30371126510318 0.989550192023698 1.22498102264907 1.36361633297391 1.37402499030751 1.36626550088975 1.74005396135917 0.185612633311999 0.175768557201967 0.175906739918679 0.181942061660345 0.180386145598976 0.179889242394595 0.179513453257915 0.182371270992149 0.179995846995806 0.183462534484456 0.185228391201154 0.179354891317335 0.176097195757112 0.175575156433057 0.184280063121886 0.176886912019009 0.179591738177971 0.191301767084013 0.182753033441152 1 1 + 2148877 2149984 2149445.545 2148386 2150151 + gene protein_coding_gene FALSE TRUE AT1G06990.1 GDSL-motif lipase/hydrolase family protein similar to RXF26, carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT1G58430.1); similar to Os01g0827700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044683.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88960.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.051960532109316 -0.534248509466056 0.603913371387633 1 -0.467585535945085 2.4146169470368 -0.051960532109316 0.0887154107689932
AT1G06680_at 13.909030690748 13.9999583874407 13.8974319722060 13.8700890667030 13.9595634928498 13.8566021117541 14.2140271685376 14.3019904332439 14.6776068424210 14.6010552313624 14.9091560309533 14.8350332715399 14.7882612018001 14.6859081683118 14.7210880315663 14.7056923637873 14.2948124038513 14.8079834368931 14.5112821077923 0.0583939167892444 0.0564148974671317 0.0573630651486406 0.0594121428556094 0.0560613165235086 0.0642587602316697 0.0564550217500033 0.055078786162103 0.0598984954757084 0.0581697314349955 0.0588998313429692 0.055078786162103 0.0595456951979211 0.0599278586607886 0.0569725725209568 0.0564921101862949 0.0646408906107093 0.059597991427378 0.0558717392996861 1 1|0 +|/ 2048139 2049160 2048641.333 2047826 2049417 + gene protein_coding_gene FALSE TRUE AT1G06680.1 PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2); calcium ion binding Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Identical to Oxygen-evolving enhancer protein 2-1, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (PSBP1) [Arabidopsis Thaliana] (GB:Q42029); similar to PSBP-2 (photosystem II subunit P-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G30790.1); similar to Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (GB:P11594); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683); contains InterPro domain Twin-arginine translocation pathway signal; (InterPro:IPR006311) -0.0442431030258534 -0.533893322238121 0.604150877556888 1 -0.467772399405118 28.6586566274920 -0.0442431030258534 0.0286216208924519
AT3G03800_at 1.50153193840880 1.52647232699458 2.00839939475884 1.45884670266882 1.23549833393859 1.43178767569922 1.50755851238880 1.23348902555476 1.55982394664752 1.13742697565548 1.28013032020753 1.38658696716821 1.39495917325202 1.37689592970616 1.06110527701159 0.938473882506294 1.26035307901622 1.54743919165158 1.08088527360144 0.203253368395205 0.198951805486519 0.193626963699961 0.199290509520392 0.193626963699961 0.205657822983437 0.193626963699961 0.196627302738230 0.21308755276632 0.207185879191958 0.195239969700026 0.194498764181731 0.197241221684921 0.197118572920363 0.198478525188223 0.204663856908806 0.200823696495033 0.204351827092676 0.201495871617084 3 0|3 /|+ 970730 971426 971167.429 969114 971467 + gene protein_coding_gene FALSE TRUE AT3G03800.1 SYP131 (syntaxin 131); t-SNARE member of SYP13 Gene Family Identical to Putative syntaxin-131 (AtSYP131) (SYP131) [Arabidopsis Thaliana] (GB:Q9SRV7); similar to SYP132 (syntaxin 132), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G08080.1); similar to syntaxin [Nicotiana benthamiana] (GB:ABI93942.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.0563671607632191 0.533838716608915 0.604187395434509 1 -0.467801116926638 2.7580088435681 0.0563671607632191 0.111653626382410
AT1G69510_at 9.79866369367672 9.74901867801514 10.2530767444043 10.1795349556745 10.4184697123714 9.87653410834299 10.5313736041424 10.2350160089824 9.938686765193 10.3129875767710 10.0649774323273 9.868363692765 9.8785545119754 9.86180934198366 9.59304825525952 9.95723317353209 10.0695892589839 10.0349469467851 10.1401355153000 0.111890979927911 0.108289592227633 0.112172521001013 0.110287951283676 0.106999166378041 0.120117082906659 0.108373152571145 0.107550862658826 0.119878151964507 0.105146309677932 0.109784174285333 0.105146309677932 0.106380841264605 0.117362543566141 0.114457832152245 0.106403219764478 0.114183729073804 0.112024226405256 0.105146309677932 1 1|0 +|/ 26130471 26131352 26131028.375 26130013 26131624 + gene protein_coding_gene FALSE TRUE AT1G69510.1|AT1G69510.2|AT1G69510.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64130.1); similar to Os01g0249300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042590.1); similar to negatively light-regulated protein [Vernicia fordii] (GB:AAD05437.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10659.1); contains InterPro domain Lg106-like; (InterPro:IPR012482) -0.0555760375295222 -0.533473459524586 0.604431692663109 1 -0.467993137047488 20.1535452444293 -0.0555760375295222 0.107988751126318
AT3G62280_at 1.82835361570533 1.75364184712713 2.289948202894 2.27620247021907 2.17743408031022 2.14516980061723 1.82304153439592 1.88090388509791 2.34770886822885 2.18675971479838 2.47301614108951 1.85992489397002 2.12665699251738 1.79544011732298 2.2754653653142 1.91676894483982 1.96187550145954 2.05439869687591 2.57993572466091 0.19743635610512 0.205445869939319 0.207078819748669 0.209423050160650 0.204287071718611 0.199807269619572 0.197800281274331 0.204826977390476 0.212953095355593 0.201931201705803 0.204805188882256 0.197544578554222 0.19743635610512 0.203399299785897 0.201046457118572 0.202279829552694 0.208145360804719 0.203496598221355 0.202860141503994 3 3 - 23060517 23061355 23060870.909 23060400 23062127 - gene protein_coding_gene FALSE TRUE AT3G62280.1 carboxylic ester hydrolase similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85172.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.0435893235197571 0.533406965365128 0.604476171827626 1 -0.468028080474860 4.23654264666404 0.0435893235197571 0.0174432138482625
AT3G50190_at 1.35501567723881 1.68866796389043 1.95976252304248 1.82132915151627 1.42601815138528 2.16574918522266 1.28062280476266 1.56465297471411 1.77915343731042 1.97768463002229 1.77448836131613 1.28241933352148 1.80608101979655 1.56688030028614 1.47122165997419 1.74452558614743 2.14999245659114 1.78414758082470 2.05770312144174 0.200056346188632 0.202744577756418 0.198068135904414 0.195449611153408 0.202769480002614 0.201687175318182 0.205151338757161 0.199939258537094 0.20626293310414 0.207792768659158 0.200406846551012 0.200706474345403 0.200252293046944 0.196553563927466 0.204197066232472 0.197934078401906 0.200995517579149 0.204398024850107 0.198015349819845 3 3 - 18620167 18621169 18620691.1 18620097 18622152 - gene protein_coding_gene FALSE TRUE AT3G50190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50140.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50130.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03197.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) 0.0651320193446223 0.533313838423335 0.604538468971314 1 -0.468077012807140 3.47555227075427 0.0651320193446223 0.150702971225984
AT3G45320_at 0.310989155584668 0.517302217578504 0.399320637645513 0.787471823083332 0.375871481071923 0.503608831882244 0.819072192100541 0.330692278388831 0.472410593252178 0.468751643791663 0.200579944851625 0.34819949176249 0.490975091492732 0.328766947033977 0.358350624858684 0.412598514902997 0.587702873672224 0.82823145714106 0.801342405015845 0.170426487809558 0.166795016208902 0.163951605843728 0.177446071722839 0.163624750352119 0.168699435051266 0.166017064282980 0.167122789511179 0.179694587506265 0.174194534905699 0.170489599006066 0.168495028897262 0.171428744422596 0.169222361815191 0.168132884094007 0.164954371756973 0.167986648711198 0.166616175638142 0.168016482410813 3 3 + 16642666 16643105 16642844.182 16642631 16643131 + gene protein_coding_gene FALSE TRUE AT3G45320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60330.1) -0.0571775149822355 -0.533210368412885 0.604607688958219 1 -0.468131370297872 1.01817132661746 -0.0571775149822355 0.115837858372057
AT4G15390_at 1.13099370490451 0.746052048161704 0.649271067183478 0.890692517321238 0.756800201421282 0.973715856085014 0.961459551236405 0.628548339013416 0.887650927733569 0.711369411520536 0.884943612608011 0.658619456108616 0.383093759613229 0.968314767430395 0.96586731722879 0.858931953893811 0.690645206554521 1.47173938890159 0.505341567335462 0.205178217093067 0.205872305663543 0.211584434652109 0.212198767068971 0.206887220997696 0.210825430652535 0.214346864087096 0.207502040307311 0.21044273957283 0.205178217093067 0.209447223009994 0.205178217093067 0.210715969217001 0.210149881876528 0.207240926404109 0.205843569423927 0.222613374297391 0.215714941020214 0.205178217093067 4 4 - 8792947 8793501 8793207.909 8792812 8794293 - gene protein_coding_gene FALSE TRUE AT4G15390.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G30280.1); similar to Transferase [Medicago truncatula] (GB:ABE84610.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.0548359818014629 0.533187060192103 0.604623282392119 1 -0.468143613787777 1.62305336149366 0.0548359818014629 0.104457760722507
AT3G50730_at 1.82567082573909 1.68763362925249 2.06836159527209 1.76110657129134 1.10474183852555 1.84785488977316 1.31491676962901 1.76184910377989 1.46402486121913 1.74759306517965 1.96951617400942 1.56924305511508 1.71144398336004 1.49618969887898 1.64544797910487 1.65476824101297 1.80413864031581 1.79331094448821 1.64312344201849 0.222003016528832 0.211181161157416 0.215852483589329 0.214918074789252 0.215588929993416 0.219937165423453 0.219771106103201 0.226956693724063 0.220921831336217 0.211357676538505 0.218879903094797 0.212035347294218 0.213178190554106 0.222445703041159 0.222113324433047 0.212337352858987 0.233889191881126 0.21900540757348 0.211181161157416 3 3|0 -|/ 18862625 18863208 18862911.3 18862514 18864118 - gene protein_coding_gene FALSE TRUE AT3G50730.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G50720.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06443.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.0676294291726658 0.533099376543129 0.604681945481313 1 -0.468189668278836 3.33339413407854 0.0676294291726658 0.160989716526065
AT1G67050_at 6.1001794511918 6.56909260752408 5.82330838048782 6.49142699978836 6.91665114426205 6.30251129155652 6.77128117775917 7.07380060333926 6.91855311080882 7.01912979236415 7.3354546459428 7.67767533133736 6.85613382805844 7.32602003909982 6.68511210849244 7.39577694735996 7.0810452186661 7.2801990409696 7.38256910898091 0.208127714575550 0.195334307634887 0.207373220079352 0.206533290707669 0.200044257008141 0.204056135137235 0.197601623812072 0.198603240257062 0.213040885930997 0.198928704675309 0.200854272903462 0.203823990141597 0.208312770915367 0.211305865310547 0.198660054876159 0.195487488605199 0.21111803013418 0.19603903599816 0.195334307634887 1 1 - 25032564 25033068 25032744.818 25032290 25033451 - gene protein_coding_gene FALSE TRUE AT1G67050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38320.1); similar to Gallus gallus vitellogenin (GB:AAA98791.1); similar to vitellogenin (GB:AAA49139.1); similar to vitellogenin [Gallus gallus] (GB:BAD32701.1) -0.073593765828514 -0.533052041130334 0.604713615558038 1 -0.468214527501974 13.6617453648430 -0.073593765828514 0.184361932379278
AT1G08410_at 7.77939450231272 7.72804841813665 7.7498901290456 8.03196332311019 6.54796755002996 7.66151875959736 7.6547556564992 8.10198502352932 8.58748081658425 7.50934035195015 8.00923185741357 8.17989240588085 8.20578175632035 8.57485956223206 8.42096480467689 7.97791613345418 8.84528840152425 8.73250017055922 7.56503525233269 0.248344671858045 0.248344671858045 0.27309935319899 0.248344671858045 0.248344671858045 0.248344671858045 0.248344671858045 0.274047961725798 0.248344671858045 0.260079338720154 0.248344671858045 0.248344671858045 0.248344671858045 0.248344671858045 0.248344671858045 0.263591422088129 0.248344671858045 0.248344671858045 0.258761192424528 1 1 + 2646460 2646468 2646464.333 2646186 2649376 + gene protein_coding_gene FALSE TRUE AT1G08410.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G27200.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89192.1); similar to GTP1/OBG [Medicago truncatula] (GB:ABE78155.1); similar to Os12g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067291.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) 0.0814039766058059 0.533017132383193 0.60473697203522 1 -0.46823285925404 15.7847353503476 0.0814039766058059 0.213511314515777
AT3G49400_at 1.43570089463796 1.7236969827764 1.83527139046846 1.73551305430735 1.40050193421219 1.40577998412383 0.980293793819427 1.22836483712961 1.88662214932986 1.99684257538616 2.03788084946784 1.91852816660117 1.59444799357889 0.59253986487023 1.52867053642892 1.42991794282828 1.33774991639526 1.25741305721292 1.55040002899853 0.20154501826773 0.206784989755366 0.207066042086899 0.20154501826773 0.20154501826773 0.205489696422876 0.207222423979978 0.201655370080922 0.207425128969277 0.203264221658871 0.20154501826773 0.203007513657191 0.207878119589101 0.211706991679620 0.208290757025893 0.20154501826773 0.204150108948502 0.20716066966068 0.20154501826773 3 3 - 18330248 18331661 18330529.444 18330234 18335467 - gene protein_coding_gene FALSE TRUE AT3G49400.1 transducin family protein / WD-40 repeat family protein similar to Os01g0702400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043994.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0484461233140682 -0.532839416149284 0.604855884221518 1 -0.468326166403242 3.10485625501496 -0.0484461233140682 0.0680130308190925
AT4G14605_at 6.51114169168731 7.14311570761429 6.55279639711015 6.71477628404599 7.70373477367381 6.94163151894153 7.20391389790015 7.24546776408153 6.11824233688855 6.49676960131101 6.28458565254707 7.08379993067568 6.96328861462535 6.67065714826067 6.55970273815181 6.63958621195479 5.78989681930184 6.1964961511747 6.38755278551098 0.188212852658095 0.182991627279659 0.188494449096706 0.179603397161391 0.193641632296735 0.187380325387887 0.185988543041627 0.183509051139985 0.202521537984703 0.183721894048416 0.184933361296733 0.181896225106078 0.181481557994656 0.190869559714914 0.181949380181961 0.188319753222978 0.210866807815027 0.183066823160275 0.182976250715518 4 4 + 8379855 8380345 8380051.818 8378425 8380709 + gene protein_coding_gene FALSE TRUE AT4G14605.1 mitochondrial transcription termination factor-related / mTERF-related similar to PDE191 (PIGMENT DEFECTIVE 191) [Arabidopsis thaliana] (TAIR:AT4G38160.2); similar to Os08g0515800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062235.1); similar to Mitochondrial transcription termination factor, mTERF (ISS) [Ostreococcus tauri] (GB:CAL50299.1); similar to Os02g0602400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047357.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) 0.0708191976108465 0.5328365134678 0.604857826541984 1 -0.46832769016694 13.4309172041685 0.0708191976108465 0.173759010972407
AT3G58550_at 1.71816683634897 2.09048499527177 2.21769643113636 1.95630478779516 1.61785669681168 2.13062569726119 1.63293829926677 1.92220422515831 1.86254409882827 2.04315505934205 1.84838655943574 1.72424448567161 2.10831988691269 1.93245539606484 1.70718851394982 1.68175417155397 1.71593876936269 2.17263047341973 1.73770170531148 0.208874547755617 0.213042913219172 0.211842732185799 0.210921111896249 0.210413447436776 0.213936759486540 0.215937492719708 0.210449683801158 0.212926160028062 0.213887173683708 0.213392156292895 0.207143372235062 0.207339091487354 0.216294859241027 0.218904299495293 0.20598994584165 0.210956739060749 0.213324198978322 0.218852145945428 3 3|0 -|/ 21660491 21661130 21660843.778 21660341 21661264 - gene protein_coding_gene FALSE TRUE AT3G58550.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid transfer protein-related [Arabidopsis thaliana] (TAIR:AT2G44300.1); similar to lipid transfer protein [Triticum aestivum] (GB:ABB90545.1); similar to Os03g0804200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051617.1); similar to Os07g0198300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059125.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.0599517375627152 0.532820550341803 0.604868508276211 1 -0.468336069875473 3.78203394773477 0.0599517375627152 0.128754673290244
AT1G54240_at 1.22723078001171 2.18367476417325 2.46005604904742 2.05367088693862 1.30798257295728 1.705698290035 1.94647257857339 1.98656906232821 1.96034367829371 2.11289340020574 1.77498788078550 1.61624556199355 2.28454233549423 1.16142613734112 1.76385359962442 1.57753065495193 1.61890572465060 2.52583455867606 1.89001491505908 0.243645047827767 0.256225571117203 0.244495334754785 0.250147819827674 0.243687180124106 0.246470482144428 0.247361265660787 0.256490519657613 0.252671771679828 0.252663876230549 0.253205545019074 0.237230556019018 0.238903752166299 0.254020964873738 0.246120081956717 0.246247792533563 0.254860238157260 0.248711361773600 0.268405343285811 1 0|1 /|+ 20257281 20258013 20257776.75 20256755 20258161 + gene protein_coding_gene FALSE TRUE AT1G54240.1 DNA binding similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G54230.1); similar to single myb histone 3 [Zea mays] (GB:AAQ62066.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.0757348521784471 -0.532679787491334 0.604962703997126 1 -0.468409951874364 3.7480026086127 -0.0757348521784471 0.192683721960428
AT4G20470_at 1.19700905756755 1.48130742340735 1.68970351065507 1.42030899352177 1.48804994598369 1.50439901448174 1.52798228400387 1.42332389864436 1.57930152510875 1.60625278125814 0.97891627003397 1.16138002174705 1.68483071206787 1.23619859806615 1.49323426512102 1.41076051254887 2.09773531380833 1.10128114962544 1.64818548826298 0.211897967327035 0.205097844571449 0.21249495031136 0.209394318252558 0.210248832744807 0.213798435035336 0.208205510474804 0.218864045246563 0.206831120238428 0.217063714610312 0.207671165900279 0.209691078323838 0.20820420807843 0.215644357406492 0.210173739236965 0.209600273779804 0.214983858430455 0.218142890983913 0.210158103271319 4 4 - 11032349 11032689 11032520.727 11032343 11032765 - gene protein_coding_gene FALSE TRUE AT4G20470.1 unknown protein -0.0487473962889176 -0.532562454205853 0.605041226859550 1 -0.468471522327304 2.96990486782682 -0.0487473962889176 0.0702140666179585
AT2G35270_at 0.75143615017756 0.908757629922874 0.743376414403523 0.895055614378463 0.968278466177536 1.15365754384619 1.03449681291988 0.9122565322408 1.20290257875661 1.00348028535320 1.19421143147885 0.680087136635026 0.8824325221141 0.863895757249985 0.963188676351364 1.22723402423734 0.983656046972755 1.46387887137890 0.726455093845071 0.196139638103259 0.194259879168616 0.194331911110396 0.193242174592188 0.193242174592188 0.193354893594820 0.197067359450044 0.194290561872211 0.198536151315192 0.203456218287939 0.193242174592188 0.199371300402254 0.201440249603431 0.219952505063267 0.199923186137496 0.198857345025364 0.198579966169482 0.193242174592188 0.197548342720489 2 2 + 14864368 14864864 14864585.636 14864100 14864957 + gene protein_coding_gene FALSE TRUE AT2G35270.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G17800.1); similar to hypothetical protein 40.t00056 [Brassica oleracea] (GB:ABD65169.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.0465328170184061 0.532553902516539 0.605046950104036 1 -0.468476009311162 1.92588225098531 0.0465328170184061 0.0539155454074753
AT1G66680_at 8.1664231647107 8.4799953940065 8.0236623060183 8.02587723971163 8.38400837353307 7.93667711294658 7.59400168874452 7.73182324556193 7.81797712781227 7.32625296068052 7.58349490782314 7.39454142743942 7.04303770765364 7.54105888980256 7.18855907597789 7.44979789305284 6.97395163502468 7.19607204111538 7.36352248326596 0.197814467077166 0.196589287727332 0.200779203136559 0.193044055483792 0.191383851418319 0.199429445525449 0.193865332240766 0.191395242411460 0.222884599587642 0.195622568774567 0.192375667312585 0.195676670786739 0.201512957420623 0.209598136912039 0.195527421680063 0.192667017741672 0.206171411775425 0.210785430504123 0.198113914836934 1 1 - 24870017 24871752 24870484.273 24869758 24872655 - gene protein_coding_gene FALSE TRUE AT1G66680.1 AR401 unknown function similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to SLL2-S9-protein [Brassica rapa] (GB:BAA77395.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) -0.0533873042767916 -0.532258798943977 0.605244466073149 1 -0.468630805400192 15.4422577595654 -0.0533873042767916 0.0975009829289424
AT3G26850_at 3.14115893779077 3.26542334015086 3.1709284146751 3.17896606912206 3.26561834130354 3.45965422566481 3.32972182632141 3.00755793000553 2.69885497114468 2.64474700557313 2.85829842767692 3.12210252773979 2.83489481924905 2.74817357367148 3.02004430535396 2.95924310265333 2.62108111417593 2.46534786542617 3.10011861544778 0.198089910148185 0.198557184801355 0.197639226196170 0.196129657875458 0.202477589472574 0.197355920158101 0.197468868288573 0.202562843048181 0.201248590850938 0.197758993664555 0.195771481407038 0.196570617617160 0.195771481407038 0.197396576672926 0.202780473809015 0.196645548987734 0.206873632763257 0.197048140162534 0.195771481407038 3 3 - 9897940 9898422 9898144.727 9896779 9899243 - gene protein_coding_gene FALSE TRUE AT3G26850.1|AT3G26850.2 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G18640.1); similar to hypothetical protein S250_18C08.12 [Sorghum bicolor] (GB:AAS82598.1); similar to Os03g0214900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049373.1); similar to Os08g0135800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060944.1) 0.048450470197849 0.532007569603437 0.605412642571121 1 -0.468762523404461 6.04898950948685 0.048450470197849 0.068557990965002
AT3G27925_at 10.2722380952855 10.2290254757630 10.2408783708028 10.2433244808760 10.5087791741412 10.1737027149922 10.6338144326285 10.3904153810248 10.5378074524870 10.4665982910365 10.5200974991236 10.3706282168896 10.3882466453411 10.3953064881360 10.1607008422911 10.6097399206355 10.4650741253411 10.4489597795650 10.2798112753458 0.0922116754460656 0.0910516182253038 0.0904812113184594 0.0946299643077115 0.0884556933391349 0.0919961951430097 0.0907445620583839 0.093716445433287 0.0932972911183826 0.090759353437517 0.0893386497910969 0.0944476033750691 0.0913687277439335 0.0954138349028402 0.0900490757940843 0.0884556933391349 0.094665727054523 0.0930123942632013 0.0929643240321264 3 3|0 -|/ 10367914 10368985 10368477.7 10367608 10370126 - gene protein_coding_gene FALSE TRUE AT3G27925.1 DEGP1 (DEGP PROTEASE 1); serine-type peptidase Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Identical to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-) (DEGP1) [Arabidopsis Thaliana] (GB:O22609;GB:Q94BX6;GB:Q9LK85); similar to DEGP8 (DEGP PROTEASE 8), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT5G39830.1); similar to Peptidase S1 and S6, chymotrypsin/Hap [Medicago truncatula] (GB:ABE84843.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.0489651554650721 -0.531884563994149 0.605494993001964 1 -0.468826993049612 20.7604805303335 -0.0489651554650721 0.072060727897868
AT4G12360_at 1.58705266885855 1.75901445676486 1.21440290829192 2.05482099238999 1.84966551483259 1.64876103798602 1.80147805820597 1.83852704165353 1.44012127139386 1.71641096324166 1.75247118833601 1.85929169925309 1.82477421563931 1.87883964637879 1.80265246246769 1.85129597129210 1.73169458796357 1.92002448822251 1.77005673141476 0.237353273087295 0.237711886088513 0.24034451173919 0.248497750059635 0.238521694016004 0.242500037184284 0.23501890142053 0.247499313679885 0.2478058887771 0.241048838364342 0.240444045267507 0.238153584271731 0.238302087705132 0.241646568646630 0.23501890142053 0.23501890142053 0.243584128070283 0.244665182237905 0.236459122263748 4 4|0 -|/ 7328183 7329032 7328765.7 7327989 7329189 - gene protein_coding_gene FALSE TRUE AT4G12360.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62790.2); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE81473.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.0654143837158882 0.531861448296873 0.605510469258466 1 -0.468839106865167 3.45412876210337 0.0654143837158882 0.152603273250178
AT1G69350_at 0.834758268749484 1.00865546809551 1.03555266545628 0.687783358466791 0.816847492754898 0.730811424660709 0.66162444790062 0.973164814103613 0.913105465858381 1.03185578383524 0.957455606309187 0.718114236637666 1.26846408672780 0.982666915861904 0.752251941705938 0.986011174392367 1.12028649536057 0.69652173967163 1.01424485223300 0.164994293014871 0.167848278076384 0.171959322502436 0.172501758255445 0.163952087561404 0.170690141268364 0.164851195521646 0.168138109273779 0.177705750254638 0.17100968759633 0.166018117176134 0.174076424407905 0.170658084549769 0.168678143176568 0.174844932096308 0.167822600115121 0.169584476868179 0.170584702810344 0.169842523774247 1 1 + 26075358 26075769 26075558.091 26073545 26075908 + gene protein_coding_gene FALSE TRUE AT1G69350.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0514912618848971 -0.531643429050549 0.605656445907405 1 -0.468953335685475 1.80446152180295 -0.0514912618848971 0.087498486795404
AT1G03880_at 1.70122269502359 1.42635261594747 1.66565670495705 1.76582621631562 1.39129266057614 1.79395049266819 1.82760128281528 1.60174634341315 2.29503891738881 1.93171007490654 2.08192863272811 1.45834190792248 2.15898580146236 1.55875377718896 1.86383839960454 1.9272105885422 1.61633374451491 2.00243896858193 1.63516714754336 0.203735813111060 0.199160501011197 0.202351379990863 0.200251411146468 0.200002022948557 0.210062454082697 0.207457039557672 0.202152444783119 0.203387107712678 0.202270182195013 0.19998618480991 0.203979438755009 0.198700560552348 0.199701132532404 0.205779295108567 0.200414088143318 0.203055369500812 0.198700560552348 0.202223502788378 1 1|0 +|/ 987119 987852 987571.4 985753 988145 + gene protein_coding_gene FALSE TRUE AT1G03880.1 CRU2 (CRUCIFERIN 2); nutrient reservoir Identical to 12S seed storage protein CRB precursor [Contains: 12S seed storage protein CRB alpha chain (12S seed storage protein CRB acidic chain); 12S seed storage protein CRB beta chain (12S seed storage protein CRB basic chain)] (CRB) [Arabidopsis Thaliana] (GB:P15456;GB:Q9SAW0); similar to CRA1 (CRUCIFERINA), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G44120.3); similar to cruciferin cru4 subunit [Brassica napus] (GB:CAA40980.1); similar to Cruciferin BnC1 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin BnC1 subunit alpha; Cruciferin BnC1 subunit beta] (GB:P33523); similar to Cruciferin CRU4 precursor (11S globulin) (12S storage protein) [Contains: Cruciferin CRU4 alpha chain; Cruciferin CRU4 beta chain] (GB:P33522); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113) -0.0527711423576704 -0.531583104961314 0.605696839597621 1 -0.468984934015912 3.54043163855511 -0.0527711423576704 0.0945853018321301
AT3G60010_at 1.03514295833826 0.941840464898875 1.00513483980681 0.870924422586244 0.901088663932045 0.887808705854132 0.809543635871407 0.428708768498384 1.1071682773281 0.723253221034915 0.76794802618568 0.57897073007454 0.50737794745223 1.20725005622082 0.933391987021877 1.15492747476244 0.77967086500974 1.24714839110364 0.90479227377973 0.194628229872957 0.191161748508739 0.200342713653845 0.191161748508739 0.191161748508739 0.203011100874453 0.191161748508739 0.201678020409667 0.197330584380989 0.209905611309189 0.204495055341050 0.195555286499119 0.194601632710361 0.194578477725463 0.194239288908828 0.203459163862574 0.202378020760432 0.199568471640734 0.197289487895079 3 3 - 22174133 22174504 22174318.636 22174071 22174535 - gene protein_coding_gene FALSE TRUE AT3G60010.1 ASK13 (ARABIDOPSIS SKP1-LIKE 13); protein binding / ubiquitin-protein ligase similar to ASK11 (ARABIDOPSIS SKP1-LIKE 11), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G34210.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.0488889809121833 0.53156256654237 0.605710592669075 1 -0.468995691460962 1.76443586186150 0.0488889809121833 0.0717560150273462
AT4G07350_at 2.78554336171959 2.49499831708783 2.33517298815829 2.76590160579075 2.17560581089233 2.55743623879178 2.20725276836199 2.32194775515512 3.17590361864305 3.04739037943547 2.87836260996872 2.71584314279619 2.78104292615535 2.88410088337958 2.83633846308029 2.87987757408842 3.16269600837509 2.43297548148516 2.59790646091935 0.185663001312796 0.179657403728014 0.193171822880890 0.184912856888848 0.182073944951770 0.183504558478223 0.187489405015569 0.179657403728014 0.182401211377613 0.18952474519773 0.180658286927678 0.179657403728014 0.179657403728014 0.179657403728014 0.179657403728014 0.186255208439011 0.180875177215252 0.181100164416833 0.187320636910337 4 4|0 -|/ 4172620 4174745 4173896.889 4172606 4175224 - gene protein_coding_gene FALSE TRUE AT4G07350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G40129.1) -0.0564509532530175 -0.531332080338811 0.605864943317798 1 -0.469116386684068 5.33638475032741 -0.0564509532530175 0.113333363331868
AT2G41630_at 7.26765808568101 7.57116518010573 7.30936177717747 6.97974486070741 7.51695902036711 7.57347926750575 7.31865322454702 7.77579649527422 7.17394495714972 7.09795270561219 7.51111971503384 7.81391907942742 7.3932563858754 7.77343560756394 7.40134797568051 7.4449980799257 7.27973287589295 7.03031377997339 7.34482975019954 0.174232628978655 0.171870044333578 0.184915577489723 0.184343175841897 0.179057183242169 0.185105481393537 0.18708278281816 0.169418830925958 0.184049036405205 0.176280705871595 0.176873212590489 0.173971041165875 0.171446967925863 0.179517726269381 0.168662522917151 0.179577027233981 0.191727625683071 0.176795302639052 0.173673642640961 2 2 - 17362636 17363511 17363153.636 17362409 17364676 - gene protein_coding_gene FALSE TRUE AT2G41630.1 TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor Encodes the transcription factor TFIIB. Identical to Transcription initiation factor IIB-1 (General transcription factor TFIIB-1) (AtTFIIB1) (TFIIB1) [Arabidopsis Thaliana] (GB:P48512); similar to transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) [Arabidopsis thaliana] (TAIR:AT3G10330.1); similar to Transcription initiation factor IIB (General transcription factor TFIIB) (GB:P48513); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Zinc finger, TFIIB-type; (InterPro:IPR013137); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0560038090693005 0.5312731238833 0.60590442816263 1 -0.469147251568806 14.7448978597918 0.0560038090693005 0.111205413905148
AT3G43930_at 1.02553717933114 1.27306035969633 0.893064220358524 0.915407812672568 0.812265644806698 0.92312745174622 0.803169370526754 0.832743305151779 1.40328028839093 0.243048888956583 0.987304499107818 0.685686706809914 0.64818683146747 0.921600258985366 1.07384411365411 0.944499202980096 1.34154640765662 1.11565114631726 1.22901405844849 0.201512444901237 0.201512444901237 0.206968256618004 0.204159219699596 0.203994506973016 0.210557652786696 0.204243018107501 0.214180638230923 0.201605216398838 0.208463060546275 0.203985619973169 0.201512444901237 0.203343525842867 0.207288493069276 0.201512444901237 0.203340387245270 0.205584591701017 0.207444793624375 0.203728172884225 3 3 - 15772011 15772659 15772347.636 15771804 15774317 - gene protein_coding_gene FALSE TRUE AT3G43930.1|AT3G43930.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26270.1); similar to BRCT [Medicago truncatula] (GB:ABE81762.1); contains InterPro domain BRCT; (InterPro:IPR001357) -0.0456595603367524 -0.5311036058625 0.606017966621239 1 -0.469235979600968 1.89641573860509 -0.0456595603367524 0.0473714561669535
AT4G18975_at 7.57331983524905 7.27614159633697 7.76516173998878 7.72400441586236 8.09217611737453 7.6219179293148 8.03807126141744 7.86677506781226 8.0220876046421 7.84860287559535 7.92906226991792 7.76273747386699 7.89159531660493 8.11097788447026 7.69326030811518 8.16230388451495 7.2258801771568 7.89903881896197 7.64564841418797 0.146759714380338 0.141851366227174 0.155481169643285 0.138285496777627 0.146839455048853 0.155352733661297 0.136531194590263 0.138811664445016 0.156794791363253 0.137304188745645 0.140847541054838 0.136011297750737 0.139652378301431 0.139807358012334 0.142625906669385 0.13684855160196 0.163531575659356 0.140281473716196 0.138561203445614 4 0|4 /|- 10392247 10392860 10392540.556 10391976 10393904 - gene protein_coding_gene FALSE TRUE AT4G18975.1|AT4G18975.2 pentatricopeptide (PPR) repeat-containing protein similar to EMB1417 (EMBRYO DEFECTIVE 1417) [Arabidopsis thaliana] (TAIR:AT4G21190.1); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os01g0757700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044296.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) 0.0539077478285852 0.530791858533602 0.60622679471783 1 -0.469399082475161 15.5812643195077 0.0539077478285852 0.100980618686512
AT4G00880_at 9.77249940999834 9.92466514348789 9.75212485888976 9.93058801936672 10.1866540497102 9.87002659719654 10.3027686053903 10.3408750792714 9.08291287764783 9.51066272335006 9.7754216231625 9.49066932254898 9.56565164206226 9.64411446390993 9.15532990179013 9.94172374745877 9.77523076702237 9.4820242627804 9.47669112959918 0.132505793370235 0.133460854907334 0.132242998522951 0.133499734114034 0.133351888849010 0.149714536470383 0.13351373637527 0.130588087970644 0.152896632793901 0.132284940306301 0.134707582218028 0.132287763347780 0.130887806372701 0.134555886821429 0.138883967368057 0.128642246913082 0.143659305260524 0.135434577967621 0.134108022067412 4 4 - 366694 367027 366852.909 366373 367274 - gene protein_coding_gene FALSE TRUE AT4G00880.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G46690.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.0483307306150287 0.530776336875563 0.60623719306839 1 -0.46940720087391 19.4902883670177 0.0483307306150287 0.0685061662185687
AT1G26760_at 2.26180255115539 2.04176902420631 2.39907862485027 2.28570298860154 2.14724340365688 2.07152319434799 2.42466781371959 2.19009372154723 2.78422870574544 2.48232710706552 2.40336096069452 2.67911143059419 2.61400215915799 2.48717851598412 2.82464150281292 2.56284331868767 2.47076309228896 2.57547331731063 2.73691807957403 0.170933421169828 0.17052063340545 0.175169759831662 0.169606535990364 0.172074496046063 0.173023307306074 0.171091047548956 0.172186714622304 0.176079083135981 0.175621470244051 0.167718483309539 0.17086976241501 0.175869604522056 0.172017548060234 0.172738289938846 0.168071586777019 0.168977715381006 0.167718483309539 0.167847549161441 1 1 - 9248297 9248866 9248672.364 9248139 9251590 - gene protein_coding_gene FALSE TRUE AT1G26760.1 SET domain-containing protein similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19640.2); similar to TPR domain containing protein, putative [Solanum demissum] (GB:AAW28574.2); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0471745341982922 -0.530435835294131 0.606465326610454 1 -0.469585239248084 4.85023337425384 -0.0471745341982922 0.0604521686130164
AT1G55180_at 2.70356674351360 2.40307450354092 2.44666370325651 2.22649779801002 2.67409657135034 2.26762462463313 2.89519096714946 2.63034350290764 3.05371737611803 2.59495547380455 3.30749359545456 3.25242802452727 3.08487190715838 2.86780369752857 3.04370776772752 2.84201524833048 2.52964523051057 3.30670607649233 3.00509073346463 0.234693980648227 0.228704111883470 0.246360975129142 0.247789145255529 0.241110646674138 0.254081784625439 0.243273425954020 0.238874521214115 0.232954450250957 0.235626330491627 0.236119126440391 0.233020915879005 0.236179175697127 0.245441588210244 0.230511659097928 0.235815968811227 0.232840160360664 0.231026031911288 0.233436353348512 1 1 - 20588787 20589412 20589066.273 20588724 20591296 - gene protein_coding_gene FALSE TRUE AT1G55180.1 PLDEPSILON (PHOSPHOLIPASE D ALPHA 4); phospholipase D member of C2-PLD. subfamily Represents a phospholipase D (PLD) gene with four exons, hence it is a member of the alpha class. Its amino acid sequence is quite different from other PLDs, therefore it might possess unique structural and/or catalytic properties. Identical to Phospholipase D epsilon (EC 3.1.4.4) (AtPLDepsilon) (PLD epsilon) (PLDalpha3) (PLDEPSILON) [Arabidopsis Thaliana] (GB:Q9C888); similar to PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT3G15730.1); similar to phospholipase D [Lycopersicon esculentum] (GB:AAG48162.1); similar to Os09g0421300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063203.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.054788586314131 -0.530033826424729 0.606734726040394 1 -0.469795298882958 5.48784320409284 -0.054788586314131 0.105851221027936
AT1G20960_at 8.62465867336043 8.80550477551317 8.75680868040644 8.98450986172864 8.93326308565852 8.73477676323066 8.81309235934595 8.92175671972152 8.46169457268726 8.54585009697092 8.57507890532743 8.78452885977208 8.68634180096694 8.47581189307737 8.45194558839378 8.86099926281848 8.7767757849897 8.51693093642734 8.81348378350107 0.113842097785324 0.115151252578152 0.112422262954992 0.112422262954992 0.116296816920937 0.118259854048789 0.114991813203452 0.116466054056648 0.121630261028143 0.117438052050428 0.115420804301390 0.117573910701691 0.117807592055371 0.115459481620166 0.124398808248319 0.112422262954992 0.117650203349233 0.117496748411384 0.118397126868137 1 1 - 7302586 7303136 7302820.818 7301737 7309903 - gene protein_coding_gene FALSE TRUE AT1G20960.1 EMB1507 (EMBRYO DEFECTIVE 1507); ATP-dependent helicase similar to U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42270.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G61140.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 8 [Bos taurus] (GB:XP_880052.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Danio rerio] (GB:XP_685958.1); similar to putative Sec63 domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAP13001.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Sec63; (InterPro:IPR004179) 0.0475643051780112 0.529780016467178 0.606904843952857 1 -0.469927843317507 17.4458269215497 0.0475643051780112 0.0637625783450995
AT3G59440_at 2.19837822726382 2.1919687894294 2.48071810219703 2.53213566484353 2.24667185929989 2.19970515609088 2.29336012626044 2.42887777238253 2.27403338711817 2.32769516998579 2.47462232631208 1.89598522207915 2.58921661616271 2.04742356227102 2.14224949636398 2.15377691670436 2.72840285591746 2.34166064202918 2.28573983252186 0.182422218441857 0.184803522615541 0.182614764277884 0.184322551388024 0.189305818861564 0.187887222282943 0.191175550294866 0.184758340626833 0.195505909882804 0.18702316154282 0.191642990954158 0.183737960078552 0.186243370749409 0.197636861960761 0.182571374835713 0.182775496089506 0.196212835417998 0.193365581462849 0.197362230587049 3 3 + 21981402 21981827 21981621 21981332 21982099 + gene protein_coding_gene FALSE TRUE AT3G59440.1 calcium-binding protein, putative similar to MSS3 (MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G43290.1); similar to calcium-binding protein [Lotus japonicus] (GB:CAB63264.3); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080) 0.0437529374809226 0.529721407365137 0.606944130577457 1 -0.46995844158123 4.61772196285691 0.0437529374809226 0.0263905526824815
AT1G60810_at 5.93351441340018 6.30747947822632 5.15919675294959 5.24122751991652 5.72416869787415 5.5307389115638 4.98173849139977 4.92797587296671 6.28383881126241 6.00708684532025 6.17130128575996 6.7191285271541 6.3536543279847 6.26635877900566 6.73501613658045 5.85106937206846 6.00066980117314 5.88546357892534 5.7860246433766 0.217198095841221 0.212805052260698 0.214734415558199 0.213264851608395 0.211215124321652 0.223959537080413 0.211215124321652 0.211215124321652 0.218312650225313 0.217112330737586 0.217730338728904 0.213103456646498 0.212071581922560 0.217953783855886 0.214970436580729 0.211215124321652 0.220506118713939 0.217043312709421 0.226595724423003 1 1|0 -|/ 22392356 22393311 22392859.222 22392192 22394830 - gene protein_coding_gene FALSE TRUE AT1G60810.1 ACLA-2 (ATP-citrate lyase A-2) One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase similar to ACLA-1 (ATP-citrate lyase A-1) [Arabidopsis thaliana] (TAIR:AT1G10670.2); similar to ACLA-3 (ATP-citrate lyase A-3) [Arabidopsis thaliana] (TAIR:AT1G09430.1); similar to ATP citrate synthase, small subunit [Medicago truncatula] (GB:ABE86911.1); similar to Os11g0696200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068510.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP citrate synthase, small subunit; (InterPro:IPR012250) 0.0491692663364127 0.529482029202826 0.607104603092916 1 -0.470083381344069 11.6124964303211 0.0491692663364127 0.0748117569032144
AT1G09430_at 9.87641188545298 9.8987705074966 9.73072659075613 9.68951453835804 9.88862003170936 9.69713075302215 8.77237357267368 8.79293206547552 9.64002087787745 9.18525766141883 9.32671986269856 9.16092713114021 9.18542901727708 9.10274752054476 8.96301503244312 8.85535961967514 8.78277772053777 8.97051837847664 9.28842295534587 0.129016947409751 0.131219282067584 0.133629737038612 0.132869823984292 0.131526773148566 0.127352038641414 0.131212296608955 0.132985524611296 0.132546220742803 0.133093459609656 0.127532500324216 0.134571377043883 0.129192007444549 0.136710070548687 0.134193294207865 0.138134389100607 0.132313369351865 0.136390121897897 0.132357829207558 1 1|0 +|/ 3043748 3044946 3044327 3041998 3045404 + gene protein_coding_gene FALSE TRUE AT1G09430.1 ACLA-3 (ATP-citrate lyase A-3) Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. similar to ACLA-1 (ATP-citrate lyase A-1) [Arabidopsis thaliana] (TAIR:AT1G10670.2); similar to ACLA-2 (ATP-citrate lyase A-2) [Arabidopsis thaliana] (TAIR:AT1G60810.1); similar to ATP citrate synthase, small subunit [Medicago truncatula] (GB:ABE86911.1); similar to Os11g0696200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068510.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP citrate synthase, small subunit; (InterPro:IPR012250) 0.044289462244252 0.529411982360579 0.607151564658548 1 -0.470119931115901 18.7506453015663 0.044289462244252 0.034302008577127
AT3G61810_at 1.07849897025818 0.978119990927575 0.821301189144517 1.35907170522252 1.45214232469708 0.499123928054846 0.968941253095284 1.10947638326448 1.33375938457133 1.35009940736514 1.01719044029699 1.08670133236251 1.00847944532419 1.17036890515713 1.12863925930136 0.673659621560215 1.25011964511677 1.23299079950206 0.976311594372067 0.222963458075481 0.217350136954547 0.219625904013122 0.217010556387371 0.218338180805994 0.224383878632782 0.223272283183227 0.217874923538497 0.215820216231775 0.217097535466829 0.215329576462792 0.217334654102868 0.220841169526990 0.218019672162635 0.220613871223681 0.218769287771911 0.215329576462792 0.220640141546834 0.228580398967448 3 3 + 22888849 22889412 22889093.909 22888143 22889444 + gene protein_coding_gene FALSE TRUE AT3G61810.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT4G29360.1); similar to beta-1,3-glucanase [Medicago sativa] (GB:ABD91576.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.0749437384825824 -0.52891202846479 0.60748680301183 1 -0.470380669416111 2.17887220633998 -0.0749437384825824 0.191713581857476
AT3G19090_at 2.53027264582046 2.58773981015098 2.37716221039664 2.06873657829430 2.14152417960202 2.55860994883755 2.3508100628604 1.98722469466351 2.71745164898014 2.87597950351882 2.79665798089421 2.66553675926070 2.88138295987659 2.92889035352645 2.64181722554950 2.81545150677661 3.03133880187420 2.93512169251057 3.01816329500791 0.217687700442734 0.216917436812836 0.212051927628857 0.219132861699946 0.226201182710696 0.215375792979026 0.223269590757592 0.217896310157159 0.217464894421926 0.218000264857984 0.218335295123865 0.212262623604268 0.21463588331639 0.217222830967027 0.220591483378602 0.213591355506533 0.212535328627828 0.215696695677110 0.216383220719118 3 3|0 +|/ 6602817 6603652 6603381.111 6601472 6603715 + gene protein_coding_gene FALSE TRUE AT3G19090.1 RNA-binding protein, putative similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43970.1); similar to RNA-binding protein homolog [Brassica napus] (GB:AAF00075.2); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818) -0.0555051982799503 -0.528735884438385 0.607604936856474 1 -0.470472477349421 5.17903808759618 -0.0555051982799503 0.110074697653234
AFFX-r2-Ec-bioC-3_at 9.56810849323524 9.74376519961834 10.0330835320473 9.72672886501038 9.47969492005155 9.6477229044074 9.43158788096273 9.75067650619557 0.0619474620862625 0.740903821581742 0.424933070958236 0.28410861168432 0.0888315815048563 0.181060607767860 0.498020773967545 0.737647974329403 0.623394163335165 0.68404526853907 0.506059827521424 0.354986409828998 0.355495798603921 0.358494742344084 0.356821975029225 0.354088317325461 0.358343812801133 0.355805387823017 0.354058363439227 0.35326256797088 0.362066533152656 0.35326256797088 0.35326256797088 0.363592253604242 0.35326256797088 0.35326256797088 0.357400662761292 0.35326256797088 0.363649255119487 0.359443232830977 NA NA NA NA NA FALSE FALSE 0.0511122940785942 0.528004556583311 0.608095538971016 1 -0.470853342874724 10.1109505178114 0.0511122940785942 0.0873470876689675
AT1G72050_at 7.50514128611944 7.55971073488675 7.49102775605248 7.12704015789275 7.96191125537618 7.32678455311766 7.98203699095859 7.21068932974984 6.62128605250965 7.23711469380586 7.27834232974764 7.55275603048311 6.59797210578483 6.26175189482969 6.905710398936 6.99038318676038 7.44831013810712 5.93957177151336 6.93127560084422 0.209191141424327 0.207533582197760 0.210926644583323 0.207964657434129 0.212324531636695 0.208732026517282 0.214839690421971 0.207551654305979 0.227681342148136 0.211458237945129 0.205406028724904 0.204744561019557 0.219028340969448 0.214385559371290 0.225537549619123 0.204744561019557 0.211765035544412 0.229237418609000 0.212825213490569 1 1|0 +|/ 27119976 27120851 27120476.889 27118686 27121132 + gene protein_coding_gene FALSE TRUE AT1G72050.1|AT1G72050.2 zinc finger (C2H2 type) family protein similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE84389.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to transcription factor IIIA [Lycopersicon esculentum] (GB:ABI85391.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0728730192592644 -0.528002337400277 0.608097027989194 1 -0.470854497835668 14.4214136818893 -0.0728730192592644 0.184270954367014
AT3G52890_at 5.24683921195968 5.51555045513722 5.32184020703919 5.20012337871390 5.49632832487591 5.57814684655103 5.41843461626602 5.59902473573193 5.73031329713109 5.76353506218683 5.93460451069331 6.23788582185787 5.67131875192109 5.8706811588235 5.8213498996397 6.2402143516981 5.77035908716623 5.77310825733823 5.83105564037082 0.184463310290874 0.181658852453056 0.178538452962458 0.185996719850189 0.171487487010457 0.185996639920238 0.175101888972374 0.182121760931241 0.189398436835866 0.171653556727887 0.173727296873788 0.177470948329835 0.175609068004110 0.173125694260288 0.171003598335074 0.170878884548291 0.179828189247632 0.176335971881507 0.183327918538017 3 3 + 19622454 19622974 19622722.455 19618935 19623164 + gene protein_coding_gene FALSE TRUE AT3G52890.1|AT3G52890.2 KIPK (KCBP-INTERACTING PROTEIN KINASE); kinase KCBP-interacting protein kinase interacts specifically with the tail region of KCBP similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G03640.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G36350.1); similar to H0321H01.14 [Oryza sativa (indica cultivar-group)] (GB:CAH66505.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0470598322586505 0.527569529629397 0.608387467043897 1 -0.471079662312878 11.2669900869286 0.0470598322586505 0.0615081607225753
AT2G36310_at 8.4123883734291 8.1834282231352 8.1453053938802 8.42869194622455 8.58902989179002 8.464138065875 8.52734359133875 8.20804401995257 8.64598479810025 8.25306811850235 8.83896950332668 8.35548805116798 8.26222366602183 8.48525041119253 8.36342321394002 8.15828077894677 8.13834760110664 8.40718795915983 8.14577963660803 0.162360958090365 0.150236866105541 0.166675483294491 0.154784580443838 0.149531071947155 0.152891201077922 0.153064837570615 0.160975720962148 0.168614788998647 0.149531071947155 0.149531071947155 0.149531071947155 0.149531071947155 0.157097973313277 0.152783952413981 0.158450534783272 0.160290008185381 0.161478104089354 0.154827274881178 2 0|2 /|- 15231825 15232598 15232133.111 15231576 15233951 - gene protein_coding_gene FALSE TRUE AT2G36310.1 inosine-uridine preferring nucleoside hydrolase family protein similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G05620.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Zea mays] (GB:AAT00629.1); contains InterPro domain Inosine/uridine-preferring nucleoside hydrolase; (InterPro:IPR001910) 0.0509295764247235 0.527506613438551 0.608429693327594 1 -0.471112379366024 16.7320081461255 0.0509295764247235 0.0865759246330517
AT3G21710_at 3.01105900086664 3.08755992809142 2.97867748939054 2.75710137107365 3.17445070326256 3.1880623625144 2.78007662373485 2.90989581206018 2.29575578848239 2.71817721777086 2.62806705605854 2.62669449608819 2.49383855754064 2.55659823691349 2.46778646707060 2.36428480278562 2.32522269461089 2.61028810314304 3.01708112135064 0.209076039939762 0.21130580313805 0.208639378554321 0.215546151315018 0.220635547929591 0.213155120472929 0.213269412031034 0.208639378554321 0.214992192425879 0.21336156373995 0.211492195888743 0.212002511048827 0.214944812814553 0.220108371554329 0.214189778548158 0.215579030383393 0.213415788654549 0.208888690413227 0.208688154401902 3 3|0 +|/ 7648505 7649516 7649044.333 7648349 7649792 + gene protein_coding_gene FALSE TRUE AT3G21710.1|AT3G21710.2 similar to Os07g0524000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059820.1)|similar to Os07g0524000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059820.1); similar to hypothetical protein S250_18C08.7 [Sorghum bicolor] (GB:AAS82597.1) -0.045241008526454 -0.527393203598612 0.608505812258642 1 -0.471171344297455 5.57891154186312 -0.045241008526454 0.0464311393831459
AT1G43570_at 1.99736687853445 1.80761429501043 2.13110067912796 1.70262401376912 1.34557616719989 1.81560567242823 1.61368129223369 1.56996427406356 1.83255276198533 1.70784699183208 1.56612365372332 1.39193230525464 1.50886243953851 1.3963245711455 1.82957133092913 1.62931056750686 1.46379198186952 1.85123036234626 1.54146028491846 0.189511915640355 0.184969790680504 0.19168293870872 0.184969790680504 0.184969790680504 0.192044834380719 0.186109805400317 0.187670149082887 0.192585136732518 0.190842041463419 0.186703962696378 0.187298378104821 0.187833078457266 0.188502103978172 0.186825181050622 0.196638101730484 0.184969790680504 0.218486410120904 0.184969790680504 1 1 - 16404322 16404862 16404556.091 16404310 16405356 - gene protein_coding_gene FALSE TRUE AT1G43570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52065.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446) -0.0563699982676539 -0.527100085965139 0.608702570735487 1 -0.471323688724068 3.38474003293817 -0.0563699982676539 0.115108959992584
AT3G55370_at 0.858771168336681 1.13939617236535 1.14930829377353 1.12850791488864 0.975295225340923 0.761908828780567 1.83068228308512 1.04570043183095 1.48931000597915 1.29419526874588 1.75872187824179 1.70301688362023 1.61085470987161 1.44135760611551 1.65379151282126 1.3170976322878 1.33762206274494 1.64866877219373 1.63208458223233 0.217481525771604 0.221697274213608 0.215710261902103 0.213210362804649 0.228050667939742 0.225297995636462 0.223421310737278 0.219673965539161 0.224564218689934 0.216676378610696 0.215326306567550 0.216320893246542 0.216845151382312 0.217787825187681 0.214922550477776 0.219303974193699 0.224043349490749 0.224464017549308 0.223615598088785 3 3 + 20539196 20539821 20539420.545 20538042 20540268 + gene protein_coding_gene FALSE TRUE AT3G55370.1|AT3G55370.2 OBP3 (OBF-BINDING PROTEIN 3); DNA binding / transcription factor|OBP3 (OBF-BINDING PROTEIN 3); DNA binding Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots. Identical to Dof zinc finger protein DOF3.6 (AtDOF3.6) (OBF-binding protein 3) (DOF3.6) [Arabidopsis Thaliana] (GB:Q9M2U1;GB:Q9XGU4); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02460.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE94576.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)|similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G02460.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE94576.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.0639271758119775 -0.52685223385641 0.608868969482519 1 -0.471452444377639 2.626573623745 -0.0639271758119775 0.148959088529768
AT4G31340_at 8.84073753006558 8.79254081921631 8.7131564130067 8.64807603302647 8.98421406093941 8.4142762627505 9.00921298793626 9.02950662854462 8.86652162893139 8.71669650531368 9.0004628766917 9.13261340018353 9.01697820452703 9.13126213065926 9.11882130438236 8.73024904087675 8.42607674070587 9.03507116612491 8.89873981443362 0.131421511963294 0.129471966842189 0.129958768310195 0.133547245156958 0.135144118062751 0.131629677637806 0.133748012591436 0.129895773627592 0.135473904378885 0.133131742849305 0.140709363185109 0.129150125144182 0.130159463658992 0.130222200442203 0.140468475764200 0.126049289421004 0.147177318258442 0.133955186281699 0.133888225293577 4 4|0 +|/ 15208059 15208906 15208504.75 15205486 15209607 + gene protein_coding_gene FALSE TRUE AT4G31340.1|AT4G31340.2 myosin heavy chain-related similar to DNA repair ATPase-related [Arabidopsis thaliana] (TAIR:AT2G24420.2); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93369.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) -0.0532231286086116 -0.526499568574072 0.609105775801639 1 -0.471635550177865 17.6920956790583 -0.0532231286086116 0.0996829871125745
AT3G12820_at 1.05164076592083 1.11614035338207 1.07277598979006 1.28963066140805 1.26772482278719 0.767743469207845 1.44239680255205 1.1785754878396 1.78186914506867 1.54061374244015 1.44325184409990 1.76835298452674 1.9005348143212 2.08649952028086 1.59458593364382 1.56541664411276 1.81287417606073 1.67726619585665 1.90350056175024 0.187788474358171 0.194740356742825 0.191403292292082 0.192065881736835 0.186880893769786 0.189278906497385 0.197307460676904 0.195529870960348 0.195889494832760 0.191381276156128 0.201733112188243 0.188196674284837 0.188959375902256 0.186512813024941 0.189054390987758 0.187035956337144 0.192248758711257 0.189449839571258 0.201696365297740 3 3 - 4074384 4074923 4074645.909 4074165 4075621 - gene protein_coding_gene FALSE TRUE AT3G12820.1 AtMYB10 (myb domain protein 10); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB58 (myb domain protein 58), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G16490.1); similar to transcription factor DcMYB1 [Daucus carota] (GB:BAE54312.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0543081677994345 -0.52629880278684 0.609240606151665 1 -0.471739737060691 2.88487466771055 -0.0543081677994345 0.105374402333737
AT4G16440_at 5.51923495083975 6.19162041817402 5.95211592495326 5.91583224032325 6.18950567880815 6.22764682657567 5.91699311695673 5.74822848531906 4.48367218238259 5.27605847235059 5.29847479030947 4.78697790884393 5.01247833391221 4.88399910565856 4.64125774733761 5.0952317779812 5.26988851885078 4.52262154620902 5.394364633384 0.205762550815304 0.197655071804289 0.199314034688018 0.202230254834115 0.197880798320849 0.209453222389326 0.202036678701571 0.205082971951560 0.202222757908191 0.200562656393444 0.201736443179473 0.201312131394426 0.202986560422028 0.202363046889958 0.200310132584857 0.197655071804289 0.203192379578914 0.204149886858457 0.202106067536792 4 0|4 /|- 9269291 9270022 9269626.778 9269286 9271532 - gene protein_coding_gene FALSE TRUE AT4G16440.1 iron hydrogenase family protein similar to Narf-like protein [Medicago truncatula] (GB:CAD10687.1); contains InterPro domain Iron hydrogenase, small subunit; (InterPro:IPR003149); contains InterPro domain Hydrogenase large subunit, C-terminal; (InterPro:IPR004108); contains InterPro domain Iron hydrogenase; (InterPro:IPR009016) 0.0573785224707418 0.526266531640472 0.609262280233552 1 -0.47175648057888 10.9527628613322 0.0573785224707418 0.120314065582032
AT4G38820_at 2.11484358902322 2.09785950330421 2.00921509081802 2.00581276147203 1.97684202584717 2.41948368060694 1.78012698337001 1.92515119621298 2.37308782610053 2.57591746160198 2.53245272329625 2.57173565450895 2.12156250937653 2.51702217599133 2.57148374154011 2.54255010089298 2.64714819567033 2.33680612409389 2.56250546223992 0.189480597593545 0.192269229904307 0.192064428513867 0.190329009606887 0.195736948868536 0.191109387005111 0.19129451938471 0.19178769412261 0.195354645896653 0.189480597593545 0.194598556038888 0.189480597593545 0.200527212783066 0.195371730613534 0.194966045751474 0.193934824667571 0.200058722030432 0.191696127044673 0.199256709108901 4 4 - 18121643 18121811 18121722.636 18121537 18121969 - gene protein_coding_gene FALSE TRUE AT4G38820.1 unknown protein 0.0498006541161282 0.52617481560237 0.609323881081357 1 -0.471804061098229 4.53313288874121 0.0498006541161282 0.080663467184795
AT1G23070_at 2.05492504810863 2.08907653812044 2.33626964265774 2.28729880673687 1.91648355910356 1.89215447235686 2.11686034037182 1.68853674465766 2.28232128683401 2.05845519525933 1.84563430148667 1.85353435742526 2.06689394018083 1.90830093704890 2.22187833847285 1.95749459504442 2.47131931466382 2.41207433932487 2.00468832763368 0.210864128595671 0.226031654014556 0.226469442419706 0.213944743908825 0.234094562668653 0.210864128595671 0.227464254102667 0.210864128595671 0.220599794581608 0.218335846581525 0.221142384010951 0.210864128595671 0.217107209564137 0.216403814961034 0.215930754400843 0.211171052944405 0.238925437225458 0.210864128595671 0.215561207125708 1 1|0 -|/ 8174012 8174668 8174420.8 8173812 8175808 - gene protein_coding_gene FALSE TRUE AT1G23070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38360.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89247.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.0488441406396997 0.525734948394262 0.609619360782567 1 -0.472032146638436 4.15134874503001 0.0488441406396997 0.0749583383020333
AT2G14450_at 1.36694721335252 1.19371903660579 1.55607791552734 1.54592212021116 1.33214575584502 1.32582501113782 1.90411066321470 1.61234013295282 1.95459928109026 1.87473626039540 1.77098658273269 1.96251036343729 1.31450173981436 1.97383741599732 1.68355698486698 2.27241274245195 2.20534597787902 2.17069398945486 1.96955613186051 0.163416952814027 0.162104357258505 0.163973146363601 0.162782701359926 0.161317940311616 0.161924135940488 0.167413293422417 0.163652562909506 0.164908499322178 0.164055234842842 0.176924652089072 0.16175222666165 0.173468785922657 0.171497842807711 0.164305374354629 0.162285876155717 0.169670020627025 0.166294715280670 0.164280885629970 2 0|2 /|+ 6158971 6159011 6158996.167 6156679 6159199 + gene protein_coding_gene FALSE TRUE AT2G14450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35920.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13270.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G34960.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.0465098636936009 -0.525434924295141 0.609820942971686 1 -0.472187615347139 3.40573328895325 -0.0465098636936009 0.058757381156789
AT1G57830_at 0.308768476026548 0.494149591083045 0.77640232023663 0.98215564192683 0.433735480452299 1.23056214795628 0.605794971271866 0.626867386606432 0.48157893991790 1.13782521019232 0.534660050931379 0.41931020893993 0.714304574221279 0.752074248924419 0.519364451801964 0.895220443368253 0.61215976941638 0.161798523823235 0.771190100826536 0.193879864230509 0.202841870106339 0.197432396596078 0.205410496910242 0.200526910596357 0.194681648287679 0.201991032419288 0.194861593767056 0.209454436772453 0.198211225276706 0.193879864230509 0.200429845666694 0.208108360036763 0.204154541759916 0.197385855172442 0.195823990978068 0.197171238738878 0.209545714121140 0.199551966789605 1 1 + 21423977 21424444 21424173.545 21423974 21424468 + gene protein_coding_gene FALSE TRUE AT1G57830.1 Toll-Interleukin-Resistance (TIR) domain-containing protein similar to Toll-Interleukin-Resistance (TIR) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G60320.1); similar to MRGH63 [Cucumis melo] (GB:AAO45749.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.0630327875060704 0.525173995324223 0.60999628518142 1 -0.472322757133343 1.36879264406529 0.0630327875060704 0.146031619161976
AT2G26430_at 7.62030472359637 7.9858791800015 7.56445388311437 7.90967708522572 8.13451300681673 8.13042306643512 7.31946241898173 7.6658347454621 7.18242498018287 7.88472559002966 7.61641848691286 7.56940933986886 7.54109803663941 7.59182265910194 7.50299590809876 7.83957885532092 7.21667900644161 7.04577613317319 7.9394687114452 0.161425361926662 0.165473113496807 0.163973031086341 0.156509312558006 0.168630966301015 0.164125368839181 0.160050265727306 0.17366253545757 0.176712136870153 0.158326288662399 0.161988136381742 0.156509312558006 0.159297272168577 0.172016141834602 0.168089116064527 0.162177266443893 0.178164077031618 0.168689475363920 0.168702254441198 2 2 - 11250511 11251300 11250935.364 11250297 11253113 - gene protein_coding_gene FALSE TRUE AT2G26430.1|AT2G26430.2|AT2G26430.3 RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator|RCY1 (ARGININE-RICH CYCLIN 1) Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to cyclin L2 [Mus musculus] (GB:NP_997561.1); similar to Os01g0377500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043083.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670)|similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to Os01g0377500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043083.1); similar to putative cyclin [Triticum aestivum] (GB:CAE54271.1); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0542478513481717 0.525159361225616 0.610006119938126 1 -0.472330334624829 15.3709912122445 0.0542478513481717 0.105664612568103
AT1G66630_at -0.018266736755513 -0.0205656803970063 0.261281296594131 -0.147729179258522 0.0455644639693133 0.199945257944433 0.277225099279625 -0.156293226003964 0.261533122863867 0.205292757618910 -0.0316093951411081 -0.329875197324777 0.0516780707314875 0.170890027223067 -0.0218197987068337 0.307645707838797 0.297451768638365 0.139190193630653 0.286032833346705 0.192817476079221 0.199946568243195 0.197455717597678 0.197505925105617 0.195620057390358 0.192569048916777 0.201053457368310 0.194289867280731 0.197357468766342 0.192569048916777 0.192569048916777 0.204264334785465 0.197776989537229 0.210767699611073 0.197185059599189 0.203614480488166 0.202437207296882 0.201475687404022 0.197284353535656 1 1 - 24859201 24859637 24859463.636 24858949 24860377 - gene protein_coding_gene FALSE TRUE AT1G66630.1 seven in absentia (SINA) family protein similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66620.1); similar to SIAH1 protein [Brassica napus var. napus] (GB:CAB89182.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0543841933585336 -0.524789370094735 0.610254796959361 1 -0.472521848468025 0.217093575282079 -0.0543841933585336 0.106546936273603
AT3G30510_at 6.34556937233618 5.8758692139429 6.11668630504383 6.3087378557413 2.34141706769005 5.41691483841156 2.58778626318695 6.1417608967059 7.37340492357771 7.34769868966832 7.2166449517728 6.86867883792129 7.11220011348482 6.4151355415336 7.31524205446891 6.91314726496652 6.90984737976725 7.57813559278783 7.40800469082816 0.318136274583695 0.300353360903875 0.300353360903875 0.318377074222404 0.341828684181967 0.354031411681303 0.363100098217073 0.300353360903875 0.300353360903875 0.300353360903875 0.300353360903875 0.316948741580476 0.334410465628712 0.317630534551795 0.300353360903875 0.300353360903875 0.329394389504157 0.300353360903875 0.328809284395564 3 0|3 /|+ 12123127 12123130 12123128.5 12123056 12123207 + gene protein_coding_gene FALSE TRUE AT3G30510.1 unknown protein -0.263523943712409 -0.52434282511765 0.610554995544012 1 -0.472752817686084 12.3505919275220 -0.263523943712409 0.81807323987778
AT4G31540_at 6.02591531181236 6.54195829897962 6.34056865968578 6.3620680585907 6.53129235531986 6.82969885235684 5.9156751031233 6.3593405114706 6.13283356712193 6.07879908537824 6.34123794605005 5.44462528387672 6.15567757569092 6.16910386891726 5.36071279118463 6.11456859833263 5.92505671674965 5.88377143652736 6.12315361493306 0.224053840056671 0.215731463297120 0.225068481515385 0.215253723321778 0.223177247833464 0.224938624036112 0.212048518165084 0.213656885748293 0.227820038042429 0.212814191492662 0.219993066271254 0.213783549532456 0.221731175620745 0.234240037171843 0.220170282441747 0.212597183712784 0.218534379684023 0.234403592564653 0.214039886919785 4 4 - 15284745 15285297 15284992.545 15284395 15287312 - gene protein_coding_gene FALSE TRUE AT4G31540.1 ATEXO70G1 (exocyst subunit EXO70 family protein G1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70G2 (exocyst subunit EXO70 family protein G2), protein binding [Arabidopsis thaliana] (TAIR:AT1G51640.1); similar to Os06g0698600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058467.1); similar to putative Exo70 exocyst complex subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD54663.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.0589667649151182 0.524272996194628 0.610601946171849 1 -0.472788918895908 12.3812844937393 0.0589667649151182 0.128649356285938
AT4G05340_at 1.12133483297897 1.08537200855862 1.21780180655163 1.12258601861832 0.998285221947868 0.953620088193538 1.14559792514272 1.25801480360849 1.22916663049906 1.60781205635339 1.27786526700041 1.35015787929411 1.18800026485911 1.3395419366387 0.959877273938975 1.42349068558961 0.989675506278822 1.40870666603747 0.91085595390166 0.181409592914682 0.178637004533318 0.183835147669910 0.183306341611720 0.182111511917229 0.188327114546286 0.181376338232497 0.187036467255852 0.183679768132280 0.191063448222239 0.191032808565815 0.183883813347016 0.186321515593562 0.183320094640363 0.184537988631594 0.183945539592967 0.191714505575324 0.188294158577983 0.178637004533318 4 0|4 /|+ 2725855 2726025 2725961.1 2725687 2726062 + gene protein_coding_gene FALSE TRUE AT4G05340.1 ATP binding similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G05380.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960) -0.0433101936872077 -0.523628052458323 0.611035671239822 1 -0.473122136372983 2.35854791246970 -0.0433101936872077 0.0273579116716661
AT3G45000_at 1.2061545273987 1.16122814283828 1.73664157928044 1.40021294956179 1.44378605644753 1.64875938191465 1.26531021586735 1.59728505584546 1.61914377217725 2.11942330420155 1.71834850751420 1.38932271211901 1.10993591763112 1.43959624449230 1.39278952614728 1.47918934003662 1.83736810251690 1.84260339463998 1.89579012815849 0.17824422680636 0.186362375164184 0.180118578445402 0.18256641695158 0.179687103646227 0.183403935195730 0.183423093666045 0.181682018457817 0.198348994347853 0.182355794938559 0.180858364392482 0.179031229099102 0.183568800731171 0.188672580791176 0.187232195298753 0.181306184964297 0.180846344822564 0.175828947858001 0.182027635430996 3 0|3 /|+ 16471638 16472356 16472026.222 16471333 16472392 + gene protein_coding_gene FALSE TRUE AT3G45000.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G22950.1); similar to putative endosomal Vps protein complex subunit [Oryza sativa (japonica cultivar-group)] (GB:BAC45115.1); contains InterPro domain Snf7; (InterPro:IPR005024) -0.0510596718641323 -0.52358022169298 0.611067843676097 1 -0.473146833204587 3.13455388180241 -0.0510596718641323 0.0894918460662297
AT1G75010_at 6.3245122625614 6.23471176289961 6.30354341582762 6.24351253357617 6.79474176375475 6.00069677739702 6.87743441316863 6.60930820727609 6.35423658876978 6.39659379051876 6.65353160053273 6.6007972325714 6.38306164554307 6.28335142094464 6.53279712552045 6.28998558731594 6.18055836513832 6.50151958513123 6.38330229784019 0.197563952532120 0.197563952532120 0.210144782076460 0.197563952532120 0.197563952532120 0.197563952532120 0.202143696928225 0.208131348607306 0.208405807786241 0.197917452093109 0.203537856930535 0.211569377015717 0.203523347711904 0.206304879644560 0.212142512947655 0.200507126001621 0.221071851220501 0.216568784319232 0.197563952532120 1 1|0 -|/ 28168682 28169808 28169197.75 28168501 28173715 - gene protein_coding_gene FALSE TRUE AT1G75010.1 similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to ARC3 homologue [Oryza sativa (japonica cultivar-group)] (GB:BAD26753.1); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.0628559721049471 -0.523303123459787 0.611254245310995 1 -0.47328986744222 12.8266799150811 -0.0628559721049471 0.146235485398963
AT1G60380_at 1.48084524390482 1.24722822683195 1.37669843326595 1.81258321411651 1.40055520128044 1.06455700904496 1.51048013713142 1.55002513547838 1.39843830743721 1.5800312162108 1.60374302043410 1.20116720660343 1.66710441850522 1.53781662646591 1.57562927096779 1.43205760754035 1.72682731572965 1.16672816469742 1.70956078762792 0.196905594660922 0.188784976439396 0.189248560572017 0.192164924612868 0.191326949756801 0.191822137008270 0.192956286677618 0.200391514136946 0.198908717527251 0.201055075010170 0.196857093584607 0.192522425222285 0.194932729907255 0.193458666976654 0.192427924014848 0.188784976439396 0.191742873102624 0.194476564752935 0.196973742741901 1 1 - 22250122 22250572 22250370 22250120 22251076 - gene protein_coding_gene FALSE TRUE AT1G60380.1 apical meristem formation protein-related similar to ANAC024 (Arabidopsis NAC domain containing protein 24), transcription factor [Arabidopsis thaliana] (TAIR:AT1G60350.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.0536693939835028 -0.523293583862029 0.611260663030335 1 -0.473294790372208 2.95615206227845 -0.0536693939835028 0.103692968971374
AT3G63270_at 3.91398705943077 4.20336021782850 3.96027892864833 4.21004090448127 4.23066996551629 4.50703933422556 3.62702029446849 3.92621906568931 3.72031486964912 3.0728016346549 3.50822037835119 3.34361261048564 3.3770397798257 3.57092357864483 2.80523652286824 3.47681152597586 3.04630173524007 3.54915984080448 3.82497061804419 0.222100242487268 0.218423061799683 0.211898374443888 0.212526219707114 0.211898374443888 0.216614373475206 0.215192718441541 0.21724905379894 0.226153961146592 0.214037853940724 0.219471154668734 0.211898374443888 0.213300781671362 0.216419534457229 0.23559774253911 0.212085927091766 0.228951413327621 0.234653123819458 0.211898374443888 3 3 - 23386941 23387409 23387198.636 23386592 23388448 - gene protein_coding_gene FALSE TRUE AT3G63270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55350.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC24862.1); similar to Os07g0175100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059011.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.0523307481360132 0.523277723492527 0.611271333094544 1 -0.473302974961916 7.50933978160635 0.0523307481360132 0.0966658322978013
AT1G45000_at 9.82046408418522 9.89933802694953 9.62158863665029 9.86121184958718 9.79349185697935 9.43671067762613 9.92698329996133 9.97551323629507 9.5924323734209 9.44039334067252 9.71325436334 9.69834033051762 9.58287369476957 9.6379740307843 9.61289282642174 9.5406830766303 9.53389406542432 9.29517137376813 9.30838580189425 0.118751353696980 0.122329511706065 0.12453191243267 0.119030078695894 0.120399840897196 0.129040355779546 0.121247086170017 0.120216549815858 0.128392362205273 0.123079229354369 0.122123249135389 0.118089802808459 0.121589453345483 0.121288331147561 0.122114509718857 0.120856204834708 0.124149101395724 0.125385694686528 0.123240779064413 1 1|0 +|/ 17013186 17014011 17013655.5 17011581 17014326 + gene protein_coding_gene FALSE TRUE AT1G45000.1 26S proteasome regulatory complex subunit p42D, putative similar to RPT4A (regulatory particle triple-A 4A), ATPase [Arabidopsis thaliana] (TAIR:AT5G43010.1); similar to 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza sativa (japonica cultivar-group)] (GB:BAB78495.1); similar to AAA ATPase; 26S proteasome subunit P45; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE79655.1); similar to 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum] (GB:BAC23035.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0487544708796366 -0.522882220069177 0.611537438535036 1 -0.473506994669685 19.3038906962974 -0.0487544708796366 0.0760827400213515
AT2G44820_at 5.92924748978606 6.2895138363277 5.73158652756079 5.83947109633347 5.8820886044168 6.13652598255079 5.63425627851503 6.11214419745032 6.35683932664816 5.66300453799011 6.01066538537573 6.0741970412413 6.16395300205675 5.65067358751771 5.28090964240431 5.9198230052532 5.65380106853853 5.41654717883785 5.34637216794997 0.248948127316401 0.238042646786121 0.244348100715971 0.237992981103042 0.235412054186658 0.242392391516088 0.244182373352295 0.231836099558539 0.253030031611699 0.237973691427514 0.229913757854054 0.229913757854054 0.242225089199562 0.246152534942932 0.23597697443425 0.233663980962490 0.242686201777977 0.23393369923438 0.234986859964894 2 2|0 +|/ 18491802 18492412 18492225.625 18491426 18492891 + gene protein_coding_gene FALSE TRUE AT2G44820.1|AT2G44820.2 similar to Os01g0224500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042454.1); similar to unknown [Hyacinthus orientalis] (GB:AAT08666.1) -0.0556449182152776 -0.522307536215522 0.611924205901493 1 -0.473803183814929 11.7243842098339 -0.0556449182152776 0.114077834305842
AT1G24430_at 1.3753742348677 1.15192696460252 1.24880358662785 1.57957987298126 1.47142164913745 1.39652804379434 1.31636322045601 1.46113301893243 1.38355986967159 1.16297286747882 1.51555508625738 1.17613351252434 1.31843865562951 0.973113472347793 1.64013331046392 1.08153477987507 1.46653789128803 1.36595612097184 1.40788584366679 0.207233912889758 0.207995331852393 0.206293200568711 0.210670071383261 0.205988424023723 0.214613500863355 0.205800973628684 0.211220927745534 0.205928734869039 0.21159296483934 0.208608482942625 0.207909160954232 0.205416981376768 0.207586108079178 0.210556705778182 0.210112213275162 0.208267248046373 0.217231039040058 0.205451106312786 1 1 - 8658179 8658752 8658418.455 8657992 8659494 - gene protein_coding_gene FALSE TRUE AT1G24430.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G26040.1); similar to Transferase [Medicago truncatula] (GB:ABE84610.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.0484598775756114 0.522168160145107 0.612018025880593 1 -0.47387497103857 2.69279876422935 0.0484598775756114 0.0746162627503325
AT4G38390_at 1.73916593699071 1.28440088386105 1.57293469805321 1.43129483795918 1.49621954828317 1.79416220379851 1.52480487691340 1.53088079961390 1.55656934674704 1.27423925774699 1.33357289682756 1.38942259000660 1.28927094590002 1.22451745061700 1.38740075275628 1.20357896477109 1.95549165941723 1.32473290098961 1.18262705113254 0.212791542257789 0.211461004008796 0.216477956373954 0.213240997283664 0.21284689741405 0.218972519334108 0.215990594299082 0.2115076879678 0.225085447701558 0.220133455622894 0.211461004008796 0.211461004008796 0.21670561072584 0.211461004008796 0.215090645458289 0.214618761777456 0.216718914282706 0.220963576924156 0.214237042696966 4 4 + 17977716 17978312 17977987.818 17975770 17978374 + gene protein_coding_gene FALSE TRUE AT4G38390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76270.1); similar to axi 1 [Nicotiana tabacum] (GB:CAA56570.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.0522631663152818 0.521551779190965 0.612433025390455 1 -0.474192227364957 2.90988817586891 0.0522631663152818 0.0972314441483167
AT2G29570_at 3.95151584810947 4.7078259027358 4.06482433765372 4.44156306988064 3.59859919200569 3.73061571704752 4.48124624395605 5.06327836767569 4.22371170981089 4.50787863317326 4.53589378970037 5.41706817296017 4.3660472976278 4.56287280768554 5.66728144973401 4.58006438853042 3.64280577142320 4.43458548717308 3.8684473128903 0.222529818781481 0.221296918627147 0.230819876012208 0.230854702926601 0.222675889251756 0.221457104067214 0.223748336273895 0.224174621389985 0.213687349944483 0.221023451477576 0.222648510272895 0.217195026882866 0.217172141980704 0.213687349944483 0.224056010619523 0.218417188379384 0.223306444146762 0.220982348557033 0.221870567704488 2 2|0 -|/ 12657251 12658368 12657470.111 12656983 12658780 - gene protein_coding_gene FALSE TRUE AT2G29570.1 PCNA2 (PROLIFERATING CELL NUCLEAR 2); DNA binding / DNA polymerase processivity factor Identical to Proliferating cell nuclear antigen 2 (PCNA 2) [Arabidopsis Thaliana] (GB:Q9ZW35); similar to PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN), DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] (TAIR:AT1G07370.1); similar to Proliferating cell nuclear antigen (PCNA) (GB:Q43124); contains InterPro domain Proliferating cell nuclear antigen, PCNA; (InterPro:IPR000730) -0.0706255839130897 -0.521406620248045 0.612530779285443 1 -0.474266890204404 8.6803535586643 -0.0706255839130897 0.179019736463342
AT3G55550_at 1.77082004292568 1.83683495564886 2.05978841059733 1.72244799619997 1.87185176786623 1.67212648322934 1.91556669282687 1.93848795030855 2.51961312736249 2.29009894304776 2.16803678620631 2.23713596706764 2.43346915285453 1.83220633675383 2.12802497568959 1.88864792061084 2.10037685708158 2.61471184884413 1.89942611079244 0.199339068427704 0.198621910308609 0.204490318605665 0.201232823750165 0.198621910308609 0.201610993798137 0.199507362657105 0.201966920946947 0.212125978511686 0.202941342907722 0.203862774126714 0.202725073597193 0.201048903257284 0.202513542095826 0.204544944378622 0.201021148627498 0.205837056116557 0.207736884415961 0.208658502918589 3 3 - 20611027 20611530 20611275.909 20610998 20613066 - gene protein_coding_gene FALSE TRUE AT3G55550.1 lectin protein kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98991.1); similar to lectin-like receptor kinase 7;3 [Medicago truncatula] (GB:AAR11300.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.0474634545249727 -0.520608067436558 0.61306868690953 1 -0.474677275480897 4.05434334963675 -0.0474634545249727 0.0689122917502024
AT4G31710_at 2.21457161159007 2.36856930358818 2.53016608287459 2.47904740726278 2.04346145060623 2.42055793916302 2.09084233721424 2.44637555847957 2.15944955654025 2.47283695078054 2.87283382334159 2.26649435641694 2.52262656162147 2.20768203332363 2.60357981861132 2.32385944682014 1.97613024326128 2.29186325166555 2.47234136844353 0.215134865528692 0.203414359148806 0.205582345328547 0.202645614465316 0.209824952639303 0.210373822681927 0.212512412132394 0.210220939483057 0.208142839177761 0.208574066568481 0.207291525815453 0.208347207835533 0.210145218697575 0.210351924283793 0.205648517137568 0.208970089451559 0.206594506128591 0.215701795865004 0.205081278417767 4 4|0 +|/ 15352341 15352944 15352669.7 15349127 15352968 + gene protein_coding_gene FALSE TRUE AT4G31710.1 ATGLR2.4 (Arabidopsis thaliana glutamate receptor 2.4) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.4 precursor (Ligand-gated ion channel 2.4) (GLR2.4) [Arabidopsis Thaliana] (GB:O81776); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.3 (Arabidopsis thaliana glutamate receptor 2.3) [Arabidopsis thaliana] (TAIR:AT2G24710.1); similar to ATGLR2.1 (Arabidopsis thaliana glutamate receptor 2.1) [Arabidopsis thaliana] (TAIR:AT5G27100.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.5 precursor (Ligand-gated ion channel 2.5) (GB:Q9LFN5); similar to Glutamate receptor 2.4 precursor (Ligand-gated ion channel 2.4) (GB:O81776); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) 0.0515714586099694 0.520603620306178 0.613071683177653 1 -0.474679559242059 4.69987045324942 0.0515714586099694 0.0939822328383665
AT4G33330_at 1.74106862835159 1.43930528613498 1.61971591310415 1.66881385495308 1.27592285064897 1.85405825409413 1.45261273002487 1.4360159422665 1.51394066938748 1.82783467123086 1.92042697410352 1.46780107072461 1.60448204383771 1.66355267041247 1.49950130139785 1.51230802035305 1.70900547573514 2.07713346115707 1.63406546073213 0.145048164656474 0.142922681679197 0.141067782395261 0.147359580577891 0.143925589994996 0.144858015938908 0.140756796488836 0.143579878100653 0.149684000468482 0.143946700271198 0.142848077352832 0.145017077184525 0.140843121111463 0.145822887635461 0.147649038208202 0.143568216459225 0.14572554265602 0.144157027006393 0.141103212712182 4 4 - 16060150 16062549 16061406.045 16060016 16063074 - gene protein_coding_gene FALSE TRUE AT4G33330.1 PGSIP3 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 3); transferase, transferring glycosyl groups similar to PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G18660.2); similar to Putative glycogenin [Oryza sativa] (GB:AAK92624.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE88903.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE88904.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.0552699241353085 0.520445709279919 0.613178081019786 1 -0.474760640240196 3.23113417127995 0.0552699241353085 0.113213694371684
AT4G25370_at 9.43658440950788 9.5279894721904 9.45983242333128 9.34802546839516 9.67646809351837 9.37964906247437 9.59836485096012 9.55628970249153 9.5153543886148 9.28465286601652 9.27255722546325 9.3049577991672 9.14350973471107 9.27946767163386 9.59223363138374 9.262819875429 9.23292857134567 9.2004438147207 9.1423765206669 0.0870014207490307 0.0867440677797794 0.0913500082100754 0.089093137934576 0.086607546242275 0.091262297387364 0.0866350703695407 0.0878987131437056 0.0952073221987581 0.085234208196327 0.0876578077268461 0.089212748367844 0.0865951036605423 0.0862327717926887 0.0865488771430997 0.0856913093481489 0.0865120099428799 0.0914185281606344 0.0867114009050355 4 4|0 +|/ 12972879 12974392 12973990.333 12972718 12974880 + gene protein_coding_gene FALSE TRUE AT4G25370.1 Clp amino terminal domain-containing protein similar to Clp amino terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G12060.1); similar to ATPase AAA-2 [Trichodesmium erythraeum IMS101] (GB:YP_722954.1); similar to Os03g0247000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049547.1); contains InterPro domain Clp, N terminal; (InterPro:IPR004176) -0.0459132407376441 -0.520362059987093 0.613234446306889 1 -0.474803581361399 18.7980217931492 -0.0459132407376441 0.0575852326536422
AT1G18950_at 5.29624055850334 5.26412620854236 5.04281375924798 5.12805702203741 5.18261981372437 5.43297016059992 5.470606613309 5.12256870398868 4.81782587482126 4.80242632688336 5.24652257528179 5.19927120254622 5.07241522415094 4.98587188806015 5.16010814718035 5.09459290314145 4.54922406884248 4.67529536646838 4.80745259541007 0.205271072667763 0.2087501054176 0.203491611441498 0.20382767983427 0.215652611899321 0.207467893631528 0.206857006751694 0.200864450844620 0.216700585600464 0.206960612323048 0.204449488866574 0.200061291554510 0.200383623268986 0.211774337249665 0.210580497870913 0.204285893617726 0.216958499060121 0.204431339838263 0.198440203852195 1 1 + 6551005 6551487 6551215.182 6546390 6551878 + gene protein_coding_gene FALSE TRUE AT1G18950.1 aminoacyl-tRNA synthetase family similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25580.1); similar to aminoacyl-tRNA synthetase [Trifolium pratense] (GB:BAE71190.1) 0.0484537037019896 0.520046848304391 0.613446868439822 1 -0.474965335584453 10.1460741571594 0.0484537037019896 0.0758491756580717
AT1G02120_at 9.31696944467813 9.21471384355236 9.2139490345271 8.97983590220666 9.64670494255926 9.14681964263908 9.10484417679103 8.82831032568533 9.3243185528225 9.34502066532339 9.3328156508781 9.50990358679533 9.34271925532909 9.51029862122271 8.99857805194064 9.34257052643326 9.31113192925159 9.3496121259217 9.4089361974411 0.113576562328244 0.114668820944353 0.115648099425783 0.112129150478745 0.112850585225219 0.122687421947735 0.118893274978057 0.116084544056128 0.124719907736498 0.118199840515366 0.114183940730170 0.113516982037717 0.111989748230128 0.116123946217976 0.114691036028406 0.110381141293877 0.118664477398482 0.120912491135255 0.117434684072742 1 1|0 +|/ 398484 399668 399193.1 395761 399897 + gene protein_coding_gene FALSE TRUE AT1G02120.1 VAD1 (VASCULAR ASSOCIATED DEATH1) similar to C2 domain-containing protein / GRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G59660.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53388.1); contains InterPro domain GRAM; (InterPro:IPR004182) 0.0541982563744334 0.519661681280763 0.613706484060594 1 -0.475162862007753 18.5298328425801 0.0541982563744334 0.108297029352393
AT1G02060_at 1.59282212775155 1.24560914691793 1.42004444579121 1.36250997469070 1.87607276625307 1.74143363086079 1.44567177602480 1.37428811113236 1.18143926480189 1.29509529812796 0.997750288328023 0.573461786293578 1.34466800968913 1.10695510321762 1.30130763370109 1.19890797156806 1.59442373747896 0.982836486398559 1.21030918277110 0.190194132551991 0.190653726717454 0.194465229157589 0.193913188239478 0.196894030262034 0.194132410241593 0.191292730493999 0.188476055586618 0.197767909043233 0.190428168520083 0.19407251359052 0.194068819548692 0.188476055586618 0.190273486789559 0.188707730114292 0.188476055586618 0.188476055586618 0.191836444997855 0.188476055586618 1 1 - 361012 361478 361236.455 360918 363094 - gene protein_coding_gene FALSE TRUE AT1G02060.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G37230.1); similar to Os02g0110400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045649.1); similar to Os02g0121900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045722.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE84479.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0470041878965047 0.51953614834734 0.613791109475325 1 -0.47522720948253 2.69054989358681 0.0470041878965047 0.0663705571506955
AT2G30690_at 1.36450911969904 1.24866638748935 2.00308002150069 1.51100643585113 1.10851100053465 1.05136811289941 1.63015377767627 1.71340057862016 1.63815467362510 1.85061340478176 1.49585245417600 1.53856010160521 1.68167107914850 1.74417340276454 1.75151911987962 1.79660996272639 1.42181659477309 1.42181539175250 1.42214118967364 0.207532143615409 0.21146141567269 0.213750866460847 0.217352063744848 0.207532143615409 0.211300946961402 0.212735431363608 0.211014063483035 0.213459757931608 0.218273160490395 0.218374798351290 0.218845122496742 0.212420863159645 0.228062040146673 0.212038934193289 0.210434768441691 0.210208800229730 0.213302403620932 0.216341564608928 2 2 + 13085146 13085644 13085417.182 13083306 13085672 + gene protein_coding_gene FALSE TRUE AT2G30690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08800.1); similar to Os03g0259900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049616.1); similar to Os01g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044407.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM15784.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) -0.0505792829241695 -0.519157044759474 0.614046709962352 1 -0.475421446385564 3.07557293897387 -0.0505792829241695 0.0892115325511331
AT3G60660_at 1.16740380768499 1.6167309624812 1.59641218925897 1.75617935210399 1.24518840228619 1.7264483727492 1.41258280399980 1.53041307485977 1.70078153924974 1.93175790690910 1.65275852699443 1.73422470235692 1.22912347260370 1.89492477042747 1.72789447899237 1.94372582269429 2.18248497242579 1.94717948860662 1.84445615418667 0.205954367979030 0.205747933209180 0.210611654837674 0.204067463228562 0.21543418120444 0.209968738636587 0.20879765591558 0.213542151781379 0.216594778075486 0.203154100458204 0.208602791547242 0.206682415295851 0.218937366624362 0.214402578292653 0.209966494881015 0.204746578066209 0.211171424009409 0.204472452965848 0.210776649594078 3 3|0 +|/ 22432945 22434067 22433426.875 22432385 22434452 + gene protein_coding_gene FALSE TRUE AT3G60660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55860.1); similar to Os07g0484500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059650.1); similar to PREDICTED: similar to Y106G6H.15 [Macaca mulatta] (GB:XP_001093574.1); contains InterPro domain Protein of unknown function DUF1395; (InterPro:IPR009829) 0.0563243730578383 0.519113558912286 0.614076032563176 1 -0.475443718130231 3.31377223542945 0.0563243730578383 0.119007714407803
AT3G03200_at 0.221107273571426 0.677016861543871 0.9776873772879 0.397627275926567 0.198415064639277 0.828499143808144 0.617976452072908 0.91943649762892 0.884487687116758 0.789455007288729 0.528265585851931 0.809153925451074 0.701615331409396 0.645406722777975 0.517710536139957 0.480406324385854 0.334412873600932 0.94785671456754 0.579726050601413 0.189435356721917 0.187879117830838 0.189074666585300 0.193174014881385 0.189207423854115 0.187042211183922 0.192199191593511 0.190340049061843 0.186745511248181 0.201195776128822 0.198039683728428 0.192821594602947 0.204175444660933 0.192829621810429 0.189155002626427 0.190226764034684 0.196673777177082 0.193500570678668 0.194182733300568 3 3|0 -|/ 736148 736861 736421.5 736148 738534 - gene protein_coding_gene FALSE TRUE AT3G03200.1 ANAC045 (Arabidopsis NAC domain containing protein 45); transcription factor similar to ANAC086 (Arabidopsis NAC domain containing protein 86), transcription factor [Arabidopsis thaliana] (TAIR:AT5G17260.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15294.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.0694732345090132 -0.518835735452033 0.614263386169012 1 -0.475585966656526 1.29063395169757 -0.0694732345090132 0.17581939763161
AT2G03130_at 3.60064068761832 3.74610854831617 3.89553291929183 4.13711054099085 3.32280516761359 3.72497305756518 3.04442137925328 4.28753627048604 4.33533773047137 4.30613415727657 4.01586767547149 3.86445672221414 3.65588699958601 4.07445906583742 3.87680807837363 4.04124411000502 4.23237252061782 4.39429203774413 4.22209502965002 0.223593980758748 0.217071872717299 0.228441939274179 0.224653987855687 0.229064600788135 0.220514636476675 0.220586528581957 0.223056006564621 0.220595811906350 0.223471991989922 0.219409974500235 0.216213522603719 0.222927001493077 0.222337676930903 0.216213522603719 0.221527920786538 0.221846703544940 0.22206560634321 0.216213522603719 2 2 + 940741 941047 940879.273 940741 941073 + gene protein_coding_gene FALSE TRUE AT2G03130.1 ribosomal protein L12 family protein similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT1G70190.1); similar to unknown [Solanum tuberosum] (GB:ABA40429.1); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) -0.084001768977266 -0.518619051225513 0.614409529770166 1 -0.475696861137527 7.87353059157384 -0.084001768977266 0.231310996114499
AT3G56550_at 1.58944710685945 1.84868163177706 1.67966997161 2.03958863308646 1.76715392208398 2.10810814256632 1.58190521447523 1.98439332896994 2.0280063205429 1.99879233169343 1.80913769531707 1.74154993130503 1.69141996278205 2.05649970184822 1.87392899122676 1.59397981459195 1.76983959146265 2.08849262052814 1.56219141039561 0.202694785074212 0.198093766195704 0.194883528950257 0.198515706328448 0.194883528950257 0.194883528950257 0.199366961983411 0.207428425300468 0.206889921843384 0.202678034134858 0.203090795641732 0.197766643594830 0.194883528950257 0.200645749127380 0.199764862212956 0.194883528950257 0.210974433627376 0.198292160158695 0.212401801308284 3 3 - 20963880 20964448 20964168.727 20963875 20965620 - gene protein_coding_gene FALSE TRUE AT3G56550.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G21065.1); similar to Os08g0434000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061876.1); similar to Os03g0795200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051546.1); similar to PPR986-12 [Physcomitrella patens] (GB:BAD67155.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0563163489525146 0.518536781230653 0.614465021703267 1 -0.475738953706002 3.67041985701691 0.0563163489525146 0.119268496474217
AT4G10070_at 3.77769866210638 3.88833380062011 4.32939151088358 3.76549694690919 4.13305129810663 4.23764593575797 3.83734621239772 3.78934659062370 3.56956086819727 3.21900800492885 3.13135041751198 3.34359407165849 2.99031604935339 3.27000385636709 3.00444016200940 3.64355811954585 3.60425121922539 3.5761094957692 3.73595902585104 0.184607345299866 0.186803762682546 0.190032086638024 0.187527977856283 0.185603981366055 0.204949465371651 0.184954359438831 0.182828774966016 0.190636470874195 0.184410992226852 0.192899640743286 0.18694163414957 0.184637894946437 0.190046530605959 0.182828774966016 0.184188391953665 0.182828774966016 0.187494949785304 0.189605180143155 4 4|0 -|/ 6295610 6296252 6295982.1 6295604 6299755 - gene protein_coding_gene FALSE TRUE AT4G10070.1 KH domain-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to hypothetical protein MtrDRAFT_AC157373g6v1 [Medicago truncatula] (GB:ABD33354.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.0527460320408694 0.518532803662938 0.614467704676344 1 -0.475740988625783 7.38410331480357 0.0527460320408694 0.101419662034238
AT1G21840_at 4.49944365890969 5.04729995905321 4.62785171287766 4.58524503194999 5.01459798603955 4.86465775958501 3.83138717773686 4.55658705931713 4.40115394408984 4.37944993805242 4.28430380860903 4.52793790046509 4.13557381509509 4.67759134753069 4.48270038869898 4.45384520521352 3.66126646130924 4.38100017259069 4.67175767293454 0.254495792401038 0.249509187806159 0.248350983235299 0.253505179892437 0.256336555440104 0.263344009401721 0.255364031771499 0.251119156973930 0.258717853290611 0.257259713060488 0.25363660549447 0.254913261929513 0.258217414720983 0.264714840635043 0.256200632507648 0.247019939499394 0.271057865688244 0.255104964699240 0.250835749596126 1 1 + 7666988 7667530 7667261.636 7666449 7667747 + gene protein_coding_gene FALSE TRUE AT1G21840.1 UREF (UREASE ACCESSORY PROTEIN F); nickel ion binding Encodes a urease accessory protein which is essential for the activation of plant urease. similar to putative urease accessory protein F [Solanum lycopersicum] (GB:CAC85466.1); contains InterPro domain Urease accessory protein UreF; (InterPro:IPR002639) 0.0654077639694696 0.518264440013376 0.614648736569362 1 -0.475878249020651 9.03320774608262 0.0654077639694696 0.159582186719082
AT4G01500_at 2.12165835477232 1.74547050977360 2.07829892854969 1.86346975981903 2.07020665451575 1.57589351804878 2.21315353097369 2.06199176788783 1.68472584520381 1.87552776533056 1.72666371796055 1.90213482497366 2.1200345087113 1.65034674541757 1.91745201436661 1.75782847695347 1.88140498221681 2.34013623094692 2.09447519061979 0.218307957765811 0.221998496024233 0.212923071691923 0.211709347900412 0.219685173598549 0.21966921680761 0.213583967000922 0.231494577212434 0.225853003894883 0.213572710678060 0.211303205485734 0.211266430455337 0.217489315887051 0.211414249716381 0.219368897355406 0.212888381617145 0.221548754754264 0.220583171892475 0.226243963408800 4 4 + 640276 640723 640492.727 639806 640940 + gene protein_coding_gene FALSE TRUE AT4G01500.1 NGA4 (NGATHA4); transcription factor similar to NGA3 (NGATHA3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G01030.1); similar to Os02g0683500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047754.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.0557553691549503 -0.518262307734853 0.61465017506245 1 -0.47587933935083 3.86472277208163 -0.0557553691549503 0.116714334227060
AT1G34000_at 11.3135176610387 11.4215140289507 11.2804901092721 11.2944385586292 11.7529005753017 11.2671172747327 12.0474507549460 11.9684965631287 11.7860341725191 11.6673853072129 12.1124378472537 11.8859663072335 12.0511232064748 11.850004124985 11.8677273415922 12.0186418745157 11.5094787852152 11.9285802193709 11.6893754604852 0.0934342325326702 0.0915463039751435 0.098272124033407 0.0947993623012892 0.0962200293558146 0.0963635364074098 0.0962325908827422 0.0946891326760779 0.100668903113257 0.092118963734998 0.0952515548569147 0.0940923454486858 0.0915841619376228 0.101522699718809 0.0997601605973418 0.0943891913918584 0.104032709608568 0.0953910217585226 0.0915463039751435 1 1|0 -|/ 12358146 12358856 12358611.8 12357890 12358946 - gene protein_coding_gene FALSE TRUE AT1G34000.1 OHP2 (ONE-HELIX PROTEIN 2) Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions. similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81198.1) -0.0501390696371751 -0.518158636994782 0.614720116206662 1 -0.475932345744874 23.3518706624513 -0.0501390696371751 0.0872300146306662
AT3G25200_at 1.66970994596664 1.74100824842428 1.85886073092601 2.11988249538245 1.45214717415658 1.79548222250553 1.70554898568931 1.81677171104054 1.77581800400622 1.97644185962507 2.03971071977402 1.76160689362788 2.08241359649183 1.51487532759949 1.98834932839534 1.72703305754120 1.76529961833774 1.74110984465935 2.24206898227151 0.187260625432652 0.182961846505865 0.187671344995875 0.192555461863498 0.186682222911621 0.180131068474014 0.180631203616346 0.184594635637056 0.182051685535878 0.180166976775439 0.182673984541415 0.182600338720962 0.190782719417874 0.184393221258566 0.189423502517514 0.180131068474014 0.183399420901945 0.189434012772944 0.190046905421862 3 3|0 +|/ 9178174 9179375 9178950.5 9178169 9179505 + gene protein_coding_gene FALSE TRUE AT3G25200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53240.1) -0.0486131920175635 -0.518039760354359 0.614800320892128 1 -0.475993114472695 3.68275614606356 -0.0486131920175635 0.0780599810174581
AT1G48470_at 2.06278128181398 2.16517846745259 2.0770107233802 2.26140751120662 1.57966103136897 1.93567694796721 1.33406248835076 1.80193547215612 2.14024437532530 1.91383781704809 1.72968911976345 1.56648216893279 1.74523550965108 1.84252725633855 1.74060035362713 1.67896911180302 2.02513425282263 1.88195959693012 1.96615888999903 0.201176601807722 0.206156708045818 0.213658997946961 0.20680620984595 0.204943581477406 0.208164403660821 0.207409626584028 0.201802745247525 0.207961941880846 0.200437243637085 0.204937316813696 0.195984123550648 0.206487388235676 0.206261747769138 0.201423728424202 0.195984123550648 0.198521679049721 0.210007911599868 0.202181426518094 1 1|0 +|/ 17918711 17919566 17919255.4 17917379 17919766 + gene protein_coding_gene FALSE TRUE AT1G48470.1 GLN1;5 (GLUTAMINE SYNTHETASE 1;5); glutamate-ammonia ligase Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots. Identical to Glutamine synthetase cytosolic isozyme 1-5 (EC 6.3.1.2) (GLN1;5) (Glutamate--ammonia ligase GLN1;5) (GLN1-5) [Arabidopsis Thaliana] (GB:Q8GXW5;GB:Q8LEA1;GB:Q9LP78); similar to ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT3G17820.1); similar to glutamine synthetase [Hevea brasiliensis] (GB:AAB61597.1); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) -0.0539863650932446 -0.518018578353103 0.614814612694317 1 -0.476003941143733 3.79375008980759 -0.0539863650932446 0.108091973997488
AT2G01060_at 9.08665638334618 9.36992042818996 9.21934296514944 9.21155007420296 9.65257598486465 9.24809276628526 8.79980020912315 8.66039685809665 8.79765696828495 8.63617400642829 8.22683981915727 8.10644597271919 8.22783954447644 8.59209933098826 7.69810102246407 8.51198501837985 7.89300317165338 8.16471691124644 8.46241848786992 0.168428123448742 0.167611734958803 0.173325539243286 0.170026247058029 0.166971771100840 0.175971425937448 0.167646305021525 0.167542575740567 0.176050451570341 0.169797111318545 0.172882279585712 0.173545442503504 0.166541228732202 0.171520009379829 0.179478982085800 0.169509184105746 0.189136448024588 0.170413376656250 0.16813188878759 2 0|2 /|- 73489 73853 73669.1 73258 75388 - gene protein_coding_gene FALSE TRUE AT2G01060.1|AT2G01060.2 myb family transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G04450.1); similar to MYB-CC type transfactor [Solanum tuberosum] (GB:BAE46413.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G13040.2); similar to MYB-CC type transfactor [Solanum tuberosum] (GB:BAE46413.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.050378663686089 -0.517822698709911 0.61494678343615 1 -0.476104040425696 17.5608979601973 -0.050378663686089 0.0888057482092784
AT4G05280_at 0.813853120661302 1.02281208024678 1.21010584942548 1.01505964531105 0.761515732211392 1.04380861373923 0.959629851814086 1.33199145942246 1.14815158468231 1.33300023098879 1.14628528491894 1.23554862577262 1.57514035322096 1.09549341787187 1.02635096934318 1.034243229818 1.71919903990383 1.50947540159088 1.63227368444063 0.191498356812715 0.179761975228 0.183310053095618 0.187242948986583 0.179659540205891 0.190803457071310 0.18103864248088 0.186174911797764 0.196186328297636 0.185423965139346 0.185730686199958 0.184102200374728 0.179659540205891 0.179659540205891 0.182459313684574 0.186700181163483 0.205628703861292 0.192457204252219 0.185055764487634 4 0|4 /|+ 2703205 2703370 2703307.111 2697579 2703503 + gene protein_coding_gene FALSE TRUE AT4G05280.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G27780.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G34740.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42730.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.0514369804649569 -0.517762563646378 0.6149873627292 1 -0.476134763709133 2.35177648094178 -0.0514369804649569 0.0947937319728323
AT3G16960_at 1.07837841820436 1.58475637184816 1.22251495862181 1.85098123199854 1.59131564888461 1.48198309817915 1.44428812931062 1.85450298859702 1.76628318346366 1.96337767698519 1.99585559606336 1.63027593301798 1.98475286343517 1.33983453709229 2.01569575314922 1.58459082872497 1.42655372299235 1.84901507322001 1.98321111385456 0.186813010774343 0.185462935571683 0.19043106114517 0.188927248182265 0.191522408156797 0.195136409463314 0.184342495026268 0.192108250843961 0.183541868740651 0.184453729517704 0.197423533225359 0.186858750838412 0.186140086214962 0.190694011125493 0.183567358901833 0.197819880566443 0.195040801407568 0.191618536124746 0.195357476372329 3 3|0 -|/ 5791824 5792243 5792091 5791818 5792270 - gene protein_coding_gene FALSE TRUE AT3G16960.1 similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G16970.1); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) -0.064875806104116 -0.517411414702735 0.61522434580796 1 -0.476314099764029 3.32989632898706 -0.064875806104116 0.157813929453213
AT2G33590_at 6.6314497805502 6.88384765985802 7.60888480090118 7.26779356329504 7.60079313768672 6.45421761049014 8.33591796305612 8.14656869763148 6.41640482529721 6.80033474415644 7.14659491075318 6.45695475601779 6.73003635569408 6.9716508778411 6.11023247848363 6.91116384380739 6.66722937722992 6.55127922631441 6.53788748743805 0.220229450536099 0.223157984215494 0.226730826540815 0.235516903922491 0.220229450536099 0.227519807267863 0.220830569024616 0.225690715897118 0.22433421352192 0.227923231394886 0.220870222544452 0.225792701459578 0.220839074957695 0.225698645924740 0.230242627672321 0.225081270566228 0.234980912097377 0.232678128354029 0.228961602965114 2 2|0 +|/ 14232452 14233062 14232803.8 14231344 14233678 + gene protein_coding_gene FALSE TRUE AT2G33590.1 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33600.1); similar to Os06g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058105.1); similar to Os06g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058104.1); similar to cinnamoyl CoA reductase 2 [Solanum tuberosum] (GB:AAN71762.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.079128352271781 -0.517101909813291 0.615433262235102 1 -0.476472072014365 14.0051933586327 -0.079128352271781 0.214094324373639
AT1G43880_at 1.09556692557670 1.07610591463645 1.28286028869968 0.99274419133003 0.971041979165616 1.27799101227465 0.919133028090853 1.05060801673369 0.72799829677374 1.43449861353328 1.30540260499958 1.15010561896581 1.25365117737105 1.01239595207316 1.23341252909988 0.98182527461016 1.64144291676793 1.01589029366962 1.43305188946143 0.157739834258140 0.156837886157260 0.154759533840314 0.158378517111878 0.153314125470757 0.155939350980816 0.161567180857219 0.154120169398460 0.161817690433843 0.156083286495882 0.157670805592176 0.153314125470757 0.155918973456910 0.158572610152627 0.161208127293287 0.156096235832186 0.15803354636482 0.162564243605202 0.153580403603944 1 1|0 +|/ 16631842 16632121 16631981.5 16630750 16632385 + gene protein_coding_gene FALSE TRUE AT1G43880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30810.1); similar to hypothetical protein 26.t00052 [Brassica oleracea] (GB:ABD65035.1); contains InterPro domain Protein of unknown function DUF1633; (InterPro:IPR012436) 0.0482777129816182 0.516866297640614 0.615592324819546 1 -0.476592269091291 2.28214745083053 0.0482777129816182 0.0766242322274563
AT3G10660_at 3.60667691973739 2.81742373401390 3.57964778507338 3.52633902316256 2.5421375491263 3.39277542617263 2.93057840551662 2.97636355741858 3.7651409321311 3.5123965086196 3.66789146531269 3.46433754514483 3.42191207404953 3.4810967704954 3.71532009867843 3.06025581075157 3.69058524679617 3.26843611207086 3.21467460534755 0.172453844444851 0.179479121538146 0.171404559589840 0.174379309729070 0.174900339511646 0.182868266886928 0.180414589802363 0.172258141488311 0.179010058588512 0.176056795543149 0.176875787296409 0.173857705467116 0.172615476231766 0.176585453926785 0.174645694531971 0.176494647612205 0.171873787029325 0.175847358643832 0.173328220351860 3 3|0 -|/ 3331610 3332591 3332071.9 3331403 3334273 - gene protein_coding_gene FALSE TRUE AT3G10660.1 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2); calcium- and calmodulin-dependent protein kinase/ kinase predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. similar to CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6), anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G17290.1); similar to CPK1 (calcium-dependent protein kinase isoform AK1), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G04870.1); similar to CPK20 (calcium-dependent protein kinase 20), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G38910.1); similar to calcium-dependent protein kinase 2 [Nicotiana tabacum] (GB:CAC82998.1); similar to calcium-dependent protein kinase 2 [Nicotiana benthamiana] (GB:CAC83000.1); similar to putative calcium-dependent protein kinase 2 [Isatis tinctoria] (GB:ABE73345.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0756448333792258 0.516563013070103 0.615797103662097 1 -0.476746912616816 6.65580950291693 0.0756448333792258 0.201178818756375
AT1G02570_at 1.91255829499950 1.97869758560233 2.17191192064896 2.06926172772846 1.85275139508200 2.03160126292878 2.17118341173240 2.21700341073634 2.57152081473802 2.27151158620316 2.33971067765944 2.40580830916039 2.16080307162172 2.31755670729002 2.50422934468482 2.64541488873228 1.79013148384378 2.39383063932360 2.26178627711938 0.206503811325142 0.19697459270704 0.196774887503011 0.196023412392668 0.199393497697519 0.196023412392668 0.203586121899386 0.201817814334690 0.196023412392668 0.198558512113271 0.197606339310116 0.19854662020217 0.196820925105592 0.197548615085824 0.205976413779484 0.196552905742575 0.203145407198987 0.1966958619323 0.200215387428791 1 1 + 543385 543794 543587.909 541380 543983 + gene protein_coding_gene FALSE TRUE AT1G02570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G47360.1) -0.0435331757839693 -0.516442938255260 0.615878188062581 1 -0.476808114467105 4.39460039267053 -0.0435331757839693 0.0383065852273744
AT1G53650_at 3.81079888591381 3.71625203285873 3.89605855134624 4.34752329090456 4.36922373519770 3.31357104422738 4.57266325215026 3.96853322836269 3.9218851849317 3.8968458596856 3.82720570962197 4.52590080293661 4.31460491974698 4.4072186216966 4.12306293907219 4.29558531570706 4.17647546609749 4.29516561673909 4.32004269368952 0.225152525597198 0.221723864890128 0.232106055622693 0.227040470531273 0.221723864890128 0.227610858525169 0.228402945909184 0.230355688570032 0.234798665995814 0.224184438217454 0.224070470087633 0.221723864890128 0.225078172920299 0.234326924640319 0.227379827018808 0.221723864890128 0.238040202617590 0.230919065318806 0.226824085331839 1 1|0 -|/ 20032938 20034101 20033567.111 20032697 20035234 - gene protein_coding_gene FALSE TRUE AT1G53650.1|AT1G53650.2 CID8; RNA binding / protein binding|CID8; RNA binding RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins. similar to CID9 (CTC-Interacting Domain 9), RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G14450.1); similar to Os01g0209400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042362.1); similar to Os02g0244600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046416.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0819634083904531 0.516371969672711 0.615926114412011 1 -0.476844280640552 8.14528317098076 0.0819634083904531 0.225113136445562
AT3G43660_at 1.48137450438886 1.62284455551398 1.47959278962781 1.80592801608720 1.69673351335577 1.77132650956836 1.92455850625702 1.39252345681368 1.81713321249519 1.56401118334444 1.73138912636859 1.44151456492347 1.58243651174294 1.64376913196324 1.85270626480551 1.73991239176700 2.11586626538433 1.79024826656897 1.75281960045638 0.196259980867727 0.197341992935352 0.199630730255009 0.199952854363017 0.194553991647172 0.197200311644451 0.19933214416869 0.203844064259294 0.201125355459658 0.196849984424869 0.199421664499194 0.197292468955743 0.199607729983355 0.200031108988051 0.193819579638323 0.193617026703377 0.206314399919375 0.206860821322654 0.195852940160679 3 3 + 15576365 15576890 15576626.091 15576212 15577035 + gene protein_coding_gene FALSE TRUE AT3G43660.1 nodulin, putative similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43630.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) 0.0544894673791181 0.516346257047116 0.6159434790686 1 -0.476857382842491 3.37113605522117 0.0544894673791181 0.111500647415074
AT1G06440_at 0.83144406819091 0.502122040661902 0.808218751595713 0.941078198124942 0.579215982464095 0.833411335763164 0.551130788851176 0.756225617881276 0.112243615749770 0.498629139671779 0.530372040385551 0.281083908514728 0.386029623412679 0.171160433220070 0.491238995949603 0.498142081355909 0.61073234120403 0.638192118381468 0.836479697583318 0.181580640120197 0.187048471723322 0.193014261866955 0.180451692106999 0.180451692106999 0.187190902250540 0.181762912802704 0.185300332189619 0.188349665594787 0.180451692106999 0.180784360338386 0.181629226534633 0.190801316429971 0.199750074779723 0.186999398134539 0.18156470093787 0.185652018156792 0.184880216861465 0.183048378728501 1 1 - 1963764 1964307 1963981 1963379 1965050 - gene protein_coding_gene FALSE TRUE AT1G06440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45790.1); similar to Os10g0510300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065035.1); similar to Protein of unknown function DUF860, plant [Medicago truncatula] (GB:ABE79863.1); contains InterPro domain Protein of unknown function DUF860, plant; (InterPro:IPR008578) 0.0493342816126891 0.516346216658513 0.615943506344663 1 -0.476857403422541 1.19201572817729 0.0493342816126891 0.0834948486456515
AT3G27920_at 1.60470904080191 1.71064561604502 1.69383453629521 1.49507614292384 1.66821382493392 1.94325906013914 1.49749356957682 1.50157468764058 2.15645272443218 2.23394747894328 2.27698135178088 2.02912572254451 2.32676075718532 2.03815100126463 1.75003468983111 2.06546666856527 2.28770968228913 1.97284805037409 1.97786669001203 0.191193981705791 0.192856054648346 0.191151165094255 0.191566583049114 0.190371444555241 0.183987820307665 0.186913285444989 0.193529886419807 0.184748248449044 0.187667952593618 0.191870356658228 0.188862076793000 0.189603597953860 0.186432114236705 0.195857437017303 0.186034567795692 0.191812197745196 0.193462570268703 0.194572830348344 3 3|0 -|/ 10363182 10364631 10363564.1 10363182 10364743 - gene protein_coding_gene FALSE TRUE AT3G27920.1 GL1 (GLABRA 1); transcription factor Encodes a Myb-like protein that is required for induction of trichome development. Identical to Trichome differentiation protein GL1 (Protein GLABROUS1) (R2R3-MYB transcription factor GL1) (GL1) [Arabidopsis Thaliana] (GB:Q9LF82;GB:Q9ST42); similar to MYB23 (myb domain protein 23), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G40330.1); similar to werewolf [Cucumis sativus] (GB:AAM23006.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0460596359535735 0.516333065780979 0.61595238769824 1 -0.47686410438307 3.74742099559882 0.0460596359535735 0.0615242780924245
AT1G09380_at 0.427280471703547 0.601804988917769 0.867740181418008 0.901251007723407 0.761373944746856 1.04397167876641 1.198508050102 0.734498114786328 1.72073117933311 0.835902354471704 1.05802038516978 0.943087290471164 0.989514857734477 0.926592180551203 0.650146292410185 0.750098727219762 0.998769796387473 0.815402772496062 0.889095922828022 0.196722792480862 0.195603314662179 0.20336611386138 0.191907234153757 0.195295011043185 0.202437086106697 0.197826155890887 0.192982385296561 0.198352600231461 0.206098690017207 0.193064434058249 0.199338305664483 0.198070506202836 0.196251347208584 0.191907234153757 0.193205910197824 0.205968036008136 0.191907234153757 0.201001712668931 1 1|0 -|/ 3026354 3027223 3026812 3026137 3029551 - gene protein_coding_gene FALSE TRUE AT1G09380.1 integral membrane family protein / nodulin MtN21-related similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT5G07050.1); similar to nodulin-like protein [Gossypium hirsutum] (GB:AAO60108.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.0520305754765027 -0.516108556008015 0.616104018724259 1 -0.476978477182419 1.83706881644519 -0.0520305754765027 0.0989213642642194
AT2G19510_at 1.88120320638828 1.66231656724181 1.71877971196718 2.36902915643988 1.48319183043640 1.88416364871544 1.65531142676728 2.06043685585700 1.54399201479148 1.90546724311057 1.76474412541925 1.69141397528498 1.69248481348217 1.49692955466352 1.51069699822379 1.49663795756998 1.65613172933919 1.71109450446369 1.96280363369316 0.163814683210605 0.164332178553139 0.160674776247102 0.160674776247102 0.166198181169734 0.166498467169930 0.162271139527476 0.165692750281437 0.163355074401289 0.175507656085325 0.163562336428455 0.161426840482524 0.173319151162263 0.179755938746125 0.163918015183765 0.160674776247102 0.171223712744696 0.166278844963962 0.168963231538642 2 2|0 +|/ 8460312 8460734 8460538.3 8460312 8460758 + gene protein_coding_gene FALSE TRUE AT2G19510.1 LOB domain family protein / lateral organ boundaries domain family protein (LBD8) Identical to Putative LOB domain-containing protein 8 (LBD8) [Arabidopsis Thaliana] (GB:Q9ZUP0); similar to LOB domain family protein / lateral organ boundaries domain family protein (LBD5) [Arabidopsis thaliana] (TAIR:AT1G36000.1); similar to lateral organ boundaries (LOB) domain protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91791.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.0637984251998907 -0.515352074016503 0.616615074802567 1 -0.477363507051005 3.55510621939544 -0.0637984251998907 0.154362501194468
AT4G38150_at 3.46730629141049 3.93636853559019 3.62090148665359 3.67880347242763 3.07625007759454 3.82547472200508 3.14587513160516 4.31848050648163 2.34175357068532 2.64514356766771 2.93087633329222 2.95666355837353 3.08595579298123 2.65273916923318 3.26932374058423 2.90344583412034 2.75682617050083 2.68454751818524 2.68974928222698 0.228572684050937 0.231347442234802 0.225826066158213 0.224563875042624 0.235121924080236 0.231471729032668 0.231273221075948 0.227018524624113 0.236977929102518 0.223871973849283 0.234827873551779 0.225859863689373 0.225540726214612 0.242106102025576 0.236261360984019 0.225723864226833 0.231245355075794 0.223871973849283 0.232559384819408 4 4 - 17901244 17901715 17901516 17900603 17902154 - gene protein_coding_gene FALSE TRUE AT4G38150.1|AT4G38150.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61990.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE80342.1); similar to Os06g0308200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057474.1); similar to Os01g0546500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043282.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0897574739319291 0.515280769730856 0.616663256752799 1 -0.477399771463535 6.36564723039713 0.0897574739319291 0.254320474609274
AT4G14670_at 1.83123758159233 1.91813899641246 1.91669976351239 2.02914262613239 1.78781280971906 1.78399317574285 1.59929980205266 1.95413273439582 2.04104666134429 1.62369587231931 1.81372777959212 1.98366953721691 2.00123224622484 1.85218375944562 1.95024161694411 2.08556801818567 2.23445481079396 1.88580918440787 2.14444509579857 0.197504084318696 0.190584874019348 0.191935813934963 0.199195724313178 0.190584874019348 0.192060018911499 0.201508255321526 0.193226973169372 0.197119823627318 0.191213385141725 0.197503355409460 0.197777967713092 0.190584874019348 0.191474235206037 0.196170395905622 0.196019971540058 0.203587266349404 0.207078466789923 0.195435098355097 4 4|0 +|/ 8411932 8412426 8412210.9 8410049 8412552 + gene protein_coding_gene FALSE TRUE AT4G14670.1 heat shock protein 101, putative / HSP101, putative This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein. similar to ATHSP101 (HEAT SHOCK PROTEIN 101), ATP binding / ATPase [Arabidopsis thaliana] (TAIR:AT1G74310.1); similar to heat shock protein 101 [Vitis vinifera] (GB:AAX08108.1); similar to AtHSP101 (GB:AAA67927.1); similar to heat shock protein (GB:AAA66338.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Clp, N terminal; (InterPro:IPR004176); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0465874038886763 0.515267103377657 0.616672491638325 1 -0.477406721445525 3.80868555898938 0.0465874038886763 0.066150414665593
AT2G33010_at 1.7677850466682 1.47081670243883 1.97904141031451 1.82006546732545 1.60327870472012 1.80334169896262 2.09173075950024 1.45549030695778 2.85528209821354 2.41233026412148 2.06089267210628 2.32724142740099 2.43074068948982 2.22334357421173 2.24588880118322 2.25023815394873 2.57468644107441 2.36757803182044 2.32598870159633 0.166341097941011 0.168555952976906 0.166403096852102 0.169334459957795 0.166341097941011 0.166943325422900 0.172066549058376 0.167194378638533 0.174670990199834 0.172165368324219 0.167927387990619 0.166341097941011 0.17000836039564 0.168026531245539 0.166341097941011 0.166341097941011 0.170481224459752 0.168730268974358 0.172573331689490 2 2 + 14019560 14020208 14019888.455 14017915 14020323 + gene protein_coding_gene FALSE TRUE AT2G33010.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to ubiquitin-associated (UBA)/TS-N domain-containing protein-related [Arabidopsis thaliana] (TAIR:AT2G33000.1); contains InterPro domain UBA-like; (InterPro:IPR009060) -0.0580740071499594 -0.51507238310878 0.616804079214168 1 -0.47750572684134 4.16958205138508 -0.0580740071499594 0.129304455656056
AT3G23490_at 10.2265033081392 10.2627625972060 10.3670064441576 10.5117406131332 10.7967405846459 10.4107426176893 10.6292321170248 10.5491864950215 10.2632967608031 10.1399029196821 10.1179992976548 9.8222699223143 10.2843468251829 10.2639821706347 10.0513054651269 10.1044689941912 10.1270723856297 10.1668109680100 9.97735904470868 0.077703917814441 0.0771390482946236 0.0785128260989587 0.079425993933148 0.0769307901160724 0.0809579921232459 0.0786397340726876 0.0770863414313587 0.0910949778342428 0.0797518641161456 0.0792812476843534 0.0771208957526913 0.0781011833641568 0.079363895762105 0.0791786237882353 0.0766345083203218 0.0826547684469266 0.0794533873379939 0.0775538661839188 3 3|0 -|/ 8423447 8424378 8424180 8423018 8424659 - gene protein_coding_gene FALSE TRUE AT3G23490.1 CYN (CYANASE); cyanate hydratase cyanase Identical to Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase) (Cyanate hydrolase) (CYN) [Arabidopsis Thaliana] (GB:O22683); similar to Os10g0471300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064827.1); similar to putative cyanase [Oryza sativa] (GB:AAG21913.1); contains InterPro domain Cyanase; (InterPro:IPR008076); contains InterPro domain Cyanate lyase, C-terminal; (InterPro:IPR003712); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.0475327653768587 0.514898568894902 0.616921550832278 1 -0.47759407257241 20.5913068031227 0.0475327653768587 0.0729429919705905
AT3G57990_at 7.28867133221844 7.3394809859675 7.20721571011453 7.30632127378722 7.58760589594799 7.20704993181099 7.75458303941556 7.63102987970993 6.82616146548913 7.15261917140028 7.08419316263459 7.06151498371372 7.10563716849587 7.08180250335419 7.18206151432905 7.20357763464299 7.16498764573047 6.88934892008179 7.06590902961071 0.161061768031736 0.169998772554944 0.175123287146524 0.165030584602673 0.170173938778403 0.181891441597305 0.169570009795901 0.173977944476329 0.18458738422798 0.159043468395822 0.177830276714271 0.164909954214171 0.160600750345261 0.164433499282964 0.168890138270047 0.158315528060587 0.171130148925806 0.171133878140344 0.169756993755860 3 3 - 21481397 21481766 21481608.364 21480979 21482463 - gene protein_coding_gene FALSE TRUE AT3G57990.1 similar to Os08g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062209.1); similar to HPr serine phosphorylation site [Medicago truncatula] (GB:ABE93056.1) -0.0473246101449418 -0.514365181007449 0.617282108784893 1 -0.477865004610588 14.4710132546830 -0.0473246101449418 0.0718732830583398
AT3G05510_at 3.68016333827139 3.71108712155168 3.62086812213552 3.49556611127447 3.12367772141949 3.32809901972634 3.21608485575618 3.25009031328835 2.72139321950685 2.99819512670145 3.19843149741621 3.03885202273214 3.16325286249654 2.95020979023614 3.34696559696021 3.12911058304312 3.24336273665811 3.0456346235243 3.21981336089814 0.211854270393601 0.209907668136544 0.205759631111314 0.212034588196061 0.206317799094555 0.215244505555457 0.204309261487431 0.216075599527261 0.212364473078473 0.206838792299688 0.206664780405465 0.208162149915847 0.214476628421777 0.207198002884905 0.213693660378594 0.206130114531239 0.221417537679891 0.207984912157899 0.212061013315265 3 3 + 1597058 1598005 1597720.182 1595375 1598277 + gene protein_coding_gene FALSE TRUE AT3G05510.1|AT3G05510.2 phospholipid/glycerol acyltransferase family protein similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G78690.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE92865.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain Tafazzin; (InterPro:IPR000872) 0.0436866157599591 0.514057911088491 0.617489864069536 1 -0.478020960041677 6.48784359201234 0.0436866157599591 0.0422484928040663
AT3G29265_at 0.888546251214455 1.04594077905187 0.88060816184153 1.30094395915086 0.944031884904268 0.761469126324626 0.933941604769585 1.05602619943762 1.55113303782821 1.27303149905104 1.02538066577598 1.41545805346281 1.28793235198831 1.07148195620471 1.45377842618345 1.2399858846739 1.20448300355018 0.960467334875743 1.06746934281529 0.206866051172128 0.218704861052247 0.204485765520163 0.222967577104181 0.209041918673601 0.205077074359999 0.206877161356480 0.210150795948100 0.201904041189316 0.209397173020842 0.209416374858449 0.211469142191491 0.209811935907410 0.201527702489807 0.211915122694185 0.208019579982451 0.220610999089526 0.205322831003413 0.204724679466847 3 3 + 11233272 11233599 11233457.2 11232949 11233659 + gene protein_coding_gene FALSE TRUE AT3G29265.1 similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT5G32482.1); similar to Zinc knuckle containing protein [Brassica oleracea] (GB:ABD64973.1) -0.0495953796025932 -0.513867204841529 0.617618824422741 1 -0.478117708877937 2.2287296222473 -0.0495953796025932 0.0864735001727319
AT3G62100_at 2.11476082073048 1.93672308854322 2.21149379037366 2.4363274731272 1.62661219673416 2.47726295343124 2.17540085271194 2.11860016067729 2.39073035518760 2.73370107355156 2.00807192543381 2.09344946106902 2.39653386312768 2.20288808650721 2.85436609753697 2.14178006189223 2.1972265711034 2.78142641452444 2.56706960492154 0.206835933790448 0.203315694098317 0.213704495086916 0.221481654371348 0.208955403269685 0.211109519250453 0.203627405272223 0.210841046863480 0.210425371664342 0.204882671768351 0.204359380635718 0.205309353354370 0.211264522994338 0.203409098373740 0.207971791997456 0.212515888144450 0.208113459332380 0.228572475042515 0.207539663006844 3 3|0 +|/ 23006819 23007543 23007014.7 23006766 23007736 + gene protein_coding_gene FALSE TRUE AT3G62100.1 IAA30 (indoleacetic acid-induced protein 30); transcription factor Belongs to Auxin inducible protein gene family. Identical to Putative auxin-responsive protein IAA30 (Putative indoleacetic acid- induced protein 30) (IAA30) [Arabidopsis Thaliana] (GB:Q9M1R4); similar to IAA20 (indoleacetic acid-induced protein 20), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46990.1); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84708.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.063906497493362 -0.513750968345973 0.617697433068712 1 -0.478176661108019 4.58629841105927 -0.063906497493362 0.155660784422343
AT3G47230_at 0.804179652874697 1.00573395084782 1.22819719818685 1.41889462915770 1.20483705523596 1.13841442840846 1.24369663655304 1.05915964827685 1.18344064902754 1.25131380803102 1.45411795962058 1.18903588120326 0.470040333112627 0.946222022132434 1.23015392474581 0.795780173220055 1.15559333112443 1.20678855980945 1.11844228041104 0.192063470313841 0.195530065132898 0.199340477665004 0.201323720090534 0.189629476738762 0.194307480889727 0.192515150620625 0.191274757040426 0.199679290733214 0.193019310330782 0.197265413087932 0.191087213168531 0.195035334634721 0.192569775522513 0.193410338678142 0.189629476738762 0.191694274867217 0.192147068299517 0.193277247603144 3 3|0 -|/ 17403084 17403928 17403526.5 17403084 17404684 - gene protein_coding_gene FALSE TRUE AT3G47230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G12505.1); contains domain no description (G3D.3.50.60.10); contains domain Clavaminate synthase-like (SSF51197) 0.0454804831201783 0.513742792007399 0.617702962767454 1 -0.478180807465002 2.25807186774815 0.0454804831201783 0.0588018027816067
AT3G16550_at 1.84083313598976 1.63390766751830 2.25366228073948 1.88468201248855 1.42339410015150 1.85698119152243 1.93249746061355 1.69087763562192 2.10028215787907 1.99840780916838 2.06015715820753 1.53026744862484 2.05458301488516 1.78591864935213 2.22087583784072 1.92118902103877 2.18789898522362 2.06896292718156 1.75115113236841 0.193447416779447 0.192526548215437 0.195062954402769 0.195474888892879 0.192835649424639 0.190089298486518 0.198367542573148 0.197377919151463 0.200262202707440 0.197274939134112 0.195165270569842 0.190730644795089 0.191010356912727 0.204862888384699 0.195591261267741 0.190919328836994 0.205275212315394 0.199514274200329 0.199073959554307 3 3|0 -|/ 5629926 5631009 5630348.625 5629926 5632423 - gene protein_coding_gene FALSE TRUE AT3G16550.1 DEGP12; serine-type peptidase/ trypsin Encodes a putative DegP protease. Identical to Putative protease Do-like 12, mitochondrial precursor (EC 3.4.21.-) (DEGP12) [Arabidopsis Thaliana] (GB:Q9LK70); similar to DEGP11 (DEGP PROTEASE 11), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT3G16540.1); similar to Os05g0417100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055560.1); similar to hypothetical protein DDBDRAFT_0204001 [Dictyostelium discoideum AX4] (GB:XP_640805.1); similar to Os02g0742500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048089.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.0544677592226379 0.51355565332012 0.617829532367892 1 -0.478275691476732 3.77894376729714 0.0544677592226379 0.112863286988838
AT1G23190_at 9.94541259767098 9.97870589871546 10.2230660937036 10.2624383913682 9.7248431195962 9.56745989891999 10.5898627654519 10.4792369913342 9.22261337893477 9.88836155279732 9.90495441926967 10.0161590431310 9.85909344501414 9.88078833699836 9.9935760950056 9.81893086260087 10.0120304267732 9.90507277378867 9.49120031968506 0.106742269030165 0.10515732828638 0.105243757471170 0.10515732828638 0.106069743543679 0.109124126431771 0.106856630795743 0.107219789846445 0.125432851007565 0.107226027312721 0.10515732828638 0.10515732828638 0.105860645444286 0.111646827830523 0.107942139294385 0.10515732828638 0.110755036740166 0.115061868839179 0.106829298751410 1 0|1 /|+ 8223211 8224134 8223687.25 8219858 8224458 + gene protein_coding_gene FALSE TRUE AT1G23190.1 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative Identical to Probable phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2) (Glucose phosphomutase 1) (PGM 1) [Arabidopsis Thaliana] (GB:O49299;GB:Q9LR42); similar to PGM (PHOSPHOGLUCOMUTASE) [Arabidopsis thaliana] (TAIR:AT5G51820.1); similar to phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative [Arabidopsis thaliana] (TAIR:AT1G70730.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9ZSQ4); similar to cytosolic phosphoglucomutase [Populus tomentosa] (GB:AAR83345.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9SM60); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; (InterPro:IPR005845); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; (InterPro:IPR005844); contains InterPro domain Phosphoglucomutase/phosphomannomutase C terminal; (InterPro:IPR005843); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; (InterPro:IPR005846); contains InterPro domain Phosphoglucomutase/phosphomannomutase; (InterPro:IPR005841) 0.0429572853937443 0.513335668959422 0.617978333431929 1 -0.478387187112972 19.8253202658259 0.0429572853937443 0.0344661994872628
AT4G14650_at 1.22379355214883 1.33828054065966 1.54182044153484 1.28349127959354 1.09451505827574 1.38206509327461 1.34710540648759 1.14545818883962 1.53874530029839 1.60735646421509 1.19030951432143 1.32401964354216 1.46563591088511 1.57546288424903 1.63920197662076 1.24941247693595 1.64699214506795 1.76966507456888 1.19824208187718 0.210348649578186 0.209659786586403 0.220893099304252 0.221328744553798 0.211916424016799 0.207372651162226 0.217523524869272 0.214512195494903 0.210897648413177 0.213812085445466 0.216742792043688 0.209977801356326 0.208968997286061 0.212617484560057 0.218384818644349 0.210401473214685 0.216788258803145 0.208461161644539 0.214371930569681 4 4 - 8400780 8401301 8401076.636 8400569 8402906 - gene protein_coding_gene FALSE TRUE AT4G14650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to CG6004-PB [Drosophila melanogaster] (GB:NP_648504.2); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_799902.2); similar to mature parasite-infected erythrocyte surface antigen [Plasmodium falciparum] (GB:AAC13303.1) 0.0481431919730547 0.513120255436716 0.618124060066017 1 -0.478496322150703 2.75991722947054 0.0481431919730547 0.0780067483191365
AFFX-BioB-M_at 6.87366080767096 6.5532070363715 7.14591693423582 6.60037817987174 5.78749616025226 6.50358534481603 6.20471472980206 7.01881420587077 1.45336545767095 1.31084233544673 1.33287040849327 1.14916124218824 1.01132248246063 0.998351681240258 1.08934657559267 1.33787755097533 1.43778482125549 1.55713350734628 0.969025083304724 0.336035560288610 0.336388218688961 0.337881329041064 0.340322174147196 0.334754142477707 0.334785882084723 0.333619555113047 0.334653995850821 0.325953267248126 0.327459490180683 0.334499108783227 0.329370446049321 0.330296656587196 0.326825755217163 0.329268028175209 0.327728794180968 0.325953267248126 0.330163570457784 0.328365537350994 NA NA NA NA NA FALSE FALSE -0.079217482624154 -0.51225709522498 0.618708157715089 1 -0.478933189128094 7.82779267111213 -0.079217482624154 0.217240119742207
AT1G49180_at 4.93725344083435 4.42806865077055 4.62987900071171 3.80488697173433 5.61968172321611 4.38232464519132 4.53625445770069 4.14676207112961 4.21382621840429 4.5362162019823 3.92619712746335 4.19872044355152 3.86922590615227 4.297632611734 3.99241586305636 4.38754815390183 3.95088851387934 3.79972602878296 4.27805264437969 0.228466849114486 0.231921769188856 0.232429670813993 0.232477015367228 0.237131738498724 0.245221889895439 0.228344392733510 0.232767948639032 0.242679917676138 0.229446825147478 0.236206364204259 0.230339564349234 0.232026107886423 0.231904070299244 0.231120242979919 0.231163780656316 0.238273262030996 0.230566254797724 0.237341245327130 1 1|0 -|/ 18188429 18190121 18189400.222 18188322 18191197 - gene protein_coding_gene FALSE TRUE AT1G49180.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G37840.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81183.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.0963977968761591 -0.512066244476875 0.61883734297514 1 -0.479029689199484 8.75838521315473 -0.0963977968761591 0.280254420053696
AT2G26900_at 10.1653051151815 10.1951354602431 10.2141907954662 10.1450889103525 10.5757835107885 10.0784118247280 10.6851320254522 10.4224714371230 10.0753578733941 10.1316387373292 10.3449367745800 10.2504135768573 10.2851832008754 10.0833043349103 10.4335256205929 10.1004170960924 10.2750001987837 10.2145814056891 9.88839397512818 0.100819131552560 0.0973264208712865 0.0984267082655766 0.101763539376237 0.0994879401443052 0.10274811099032 0.0999494054619908 0.104210676636901 0.102880796228522 0.102661998919967 0.0979333531795444 0.0996976528539615 0.100303237795927 0.103512415959199 0.09991408453015 0.0967272184418727 0.107091537151766 0.106691711020606 0.105085424424093 2 2|0 -|/ 11482397 11483472 11482777.125 11482030 11485022 - gene protein_coding_gene FALSE TRUE AT2G26900.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT1G78560.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657); contains InterPro domain Bile acid transporter; (InterPro:IPR004710) 0.051490582465499 0.512061337704076 0.618840664505734 1 -0.479032169766178 20.4502984539160 0.051490582465499 0.098205144232655
AT4G33810_at 2.61169259407089 2.50023719482776 2.42944577218094 2.13399829090884 2.07538589043053 2.18138370526768 2.7304202108968 2.06009408543975 3.63267092738288 2.58226240637824 3.04570558194676 3.45471504815676 3.22555559541808 3.43922671306853 4.17333496046334 3.70965541861023 3.35889608540247 3.68283513651532 3.16049825139988 0.252272772299982 0.235167076416534 0.245861783377678 0.241558792791023 0.244437075095881 0.251787285592570 0.253010703337607 0.239535710628318 0.236843094529455 0.238702768551662 0.242889108385892 0.246833448877400 0.237597763676245 0.24730417865881 0.252273892446806 0.239749343516031 0.249535141011511 0.248513018239573 0.242093600572350 4 4 - 16213344 16213935 16213686.1 16213329 16215599 - gene protein_coding_gene FALSE TRUE AT4G33810.1 glycosyl hydrolase family 10 protein similar to glycosyl hydrolase family 10 protein [Arabidopsis thaliana] (TAIR:AT4G33820.1); similar to endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT2G14690.1); similar to endoxylanase [Carica papaya] (GB:AAN10199.1); contains InterPro domain Glycoside hydrolase, family 10; (InterPro:IPR001000); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.0577695495577752 0.511930365179539 0.618929326728424 1 -0.479098373189179 5.65852443258691 0.0577695495577752 0.129535105958452
AT2G21480_at 1.33414954274621 1.24040809273870 1.70561688225167 1.27915383116347 0.990291852823528 1.48722653603892 1.00624881880413 1.28049333497321 2.14158143886142 1.67782043730161 1.51186565068102 1.68157625380586 1.48626103224025 1.09086760588613 1.53725153952428 1.46048169097666 1.87612035436258 1.34294952441240 1.46598347683627 0.172520409453150 0.179108768945703 0.182331915290053 0.176672381688895 0.177744151963388 0.172520409453150 0.173456642743936 0.172520409453150 0.181664602928528 0.177131193016859 0.180940097385885 0.175264053401776 0.175482246199798 0.173745134539033 0.172520409453150 0.172520409453150 0.183970370923177 0.177939829906115 0.177019479665655 2 2 - 9209868 9210392 9210068.182 9209833 9212448 - gene protein_coding_gene FALSE TRUE AT2G21480.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G61350.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39110.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAK63934.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98993.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.056563041463227 -0.511852148140618 0.618982278998316 1 -0.479137902329513 2.92055702351877 -0.056563041463227 0.123926029740883
AT3G07470_at 8.9606648405421 9.04570893467378 9.0408692418111 8.89574403769595 9.21511989050145 9.16891050987347 9.88837083652604 9.53562537355248 9.76832656329179 9.1741602372555 10.6069853251217 9.77606750634053 9.75815031642345 9.95007199007888 9.93743939311034 9.49719005533106 9.36776018899717 9.59423878603111 9.37910372479958 0.110428750651390 0.109546352354689 0.107328998893276 0.110166242031858 0.107981952205982 0.108279384131120 0.114401929885465 0.115105706229459 0.114430431768379 0.110133844331960 0.111178930867890 0.107128771016221 0.10878473901254 0.117361537287506 0.111535914209009 0.109736204036119 0.110219056224319 0.116814647362241 0.107996531063749 3 3 - 2387326 2388306 2388019.636 2386903 2388477 - gene protein_coding_gene FALSE TRUE AT3G07470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07460.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84656.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.0465130968552774 0.511443338371455 0.619259076510327 1 -0.479344412310804 18.8446357682945 0.0465130968552774 0.0681005814457915
AT1G19360_at 8.43678142115076 8.56720282821912 8.11729737895667 8.13143566715884 8.57620324634316 8.1317372509907 8.02850178781632 7.85903464844416 7.99484001382444 7.17577946387046 7.61555221341321 7.79791663209437 7.54686029032655 7.5556783715211 7.73541501603939 7.51652322174233 7.52496858174932 7.82821933014556 7.50375508876981 0.176150943454504 0.167415012980195 0.178674842800147 0.182058779009062 0.173210367929209 0.176928405384865 0.172109186375209 0.167415012980195 0.182561493320951 0.180163828652778 0.181959270402367 0.167415012980195 0.174351325835166 0.173111969291583 0.175882220542459 0.171320610987490 0.185742550230430 0.17737038108628 0.176823971258917 1 1 - 6690711 6691216 6690998.636 6690447 6692468 - gene protein_coding_gene FALSE TRUE AT1G19360.1 similar to RRA2 (REDUCED RESIDUAL ARABINOSE 2) [Arabidopsis thaliana] (TAIR:AT1G75110.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83249.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0491525330477443 0.511158131566096 0.619452221297312 1 -0.479488391552068 15.8301575599436 0.0491525330477443 0.0853913451306335
AT3G15120_at 7.43422682053681 7.98904464065994 7.48274781602404 7.76037742154456 7.88560732821936 7.71590004119194 7.38287482579137 7.90182770745431 7.0906344192828 7.35884068700734 7.38104043770005 7.5047406667034 7.32650293320882 7.1744469263285 7.11720590589438 7.5134368659507 6.59383555380068 7.00938170197875 7.62444223535939 0.215443779804006 0.203251427494922 0.209806389718385 0.202666240340310 0.208718234758794 0.234575671342937 0.218199444221197 0.201331701588015 0.239187469880711 0.212752851633369 0.215492063317049 0.203473904119133 0.210715627686273 0.223055530855504 0.217276180643367 0.205181851182567 0.230689188486806 0.213707450150881 0.209820282245239 3 3 - 5088531 5089051 5088804 5088373 5095489 - gene protein_coding_gene FALSE TRUE AT3G15120.1 AAA-type ATPase family protein similar to cell division cycle protein 48-related / CDC48-related [Arabidopsis thaliana] (TAIR:AT1G05910.1); similar to hypothetical protein UM04657.1 [Ustilago maydis 521] (GB:XP_760804.1); similar to Os01g0668300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043815.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0606169600682389 -0.510750006639315 0.619728659640466 1 -0.47969429015358 14.9743489857589 -0.0606169600682389 0.143020405581792
AT3G21240_at 5.00974732628061 5.04421135962432 5.02160202879556 5.41205493457032 4.34619756932277 4.59852034334388 4.82516705828025 5.32748388814225 4.39735122465932 4.75117914893865 4.61311236586092 5.12919067382701 4.99977443066494 4.5188944081412 4.81144920910188 4.9354236356013 5.06511712233505 5.29584076850864 4.66163103531117 0.196240520189679 0.186878780210711 0.190267735318356 0.190583718170455 0.186878697431476 0.194665401421718 0.186770289780883 0.188964053021953 0.194408262933842 0.18905930205448 0.190242973217280 0.190448759790587 0.190111700996518 0.188618820373264 0.187955223222455 0.187953154220794 0.187133591578772 0.190509583360748 0.190721265463882 3 3|0 -|/ 7454567 7455270 7454997.8 7454275 7457385 - gene protein_coding_gene FALSE TRUE AT3G21240.1 4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. Identical to 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2) (At4Cl2) (4-coumaroyl- CoA synthase 2) (4CL2) [Arabidopsis Thaliana] (GB:Q9S725;GB:Q9LU35); similar to 4CL1 (4-COUMARATE:COA LIGASE 1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G51680.1); similar to 4CL3 (4-coumarate:CoA ligase 3), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G65060.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:CoA ligase 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAC39366.1); similar to 4-coumarate:coA ligase 2 [Rubus idaeus] (GB:AAF91309.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0553272506891744 0.510708714539095 0.619756631754821 1 -0.479715113274673 9.71036679507407 0.0553272506891744 0.118593620085105
AT2G02960_at 8.01118797463839 7.78655707833154 7.84115295723804 7.5584031849628 8.16633205066291 7.53521180318558 7.20765886817635 7.06232247289644 7.96122226753616 7.38744666600961 7.79116694997075 7.5383660723111 7.56201607117305 7.63355069174751 7.64638700760169 7.63661236240549 7.05783588648665 7.75594539543974 7.81542091214703 0.161581691275791 0.155000261958503 0.161284238646988 0.16197733346703 0.15325716323691 0.169352568895060 0.158872057218341 0.163460444069170 0.173894948720402 0.155850496495137 0.15200716932861 0.154849572369594 0.157694921111084 0.163798396205580 0.159580024295471 0.155941748669834 0.172313617143025 0.168518989753243 0.155916094349160 2 0|2 /|- 862371 863092 862650.333 862086 864446 - gene protein_coding_gene FALSE TRUE AT2G02960.1|AT2G02960.2|AT2G02960.3|AT2G02960.4|AT2G02960.5 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14260.2); similar to Zinc finger protein, putative [Solanum demissum] (GB:ABI34360.1); similar to Os02g0577100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047219.1); similar to Os11g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068224.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0573575866230247 0.5105896350339 0.619837302172918 1 -0.479775154716279 15.2956524670313 0.0573575866230247 0.128322327116584
AT1G51410_at 2.25505713488971 2.02107696850254 2.02071380739408 2.22128415787552 2.04016897457195 1.96086954493113 1.99026819780492 2.08646671148715 2.13172494264456 2.16526699085991 1.97355364091238 2.08287534305027 2.46186803787461 1.82037006464057 2.41972344212148 1.88854373275472 1.86991596638308 2.3571770158389 2.21865915195235 0.196017748379446 0.196676058281775 0.205225995501071 0.197020770918773 0.196094239335079 0.197428029213190 0.194907146525145 0.194710013680235 0.209919886485873 0.204500046131015 0.194710013680235 0.196019505911774 0.201516142834958 0.212567292620185 0.199588009111961 0.197903538739153 0.202116700182015 0.199346384653623 0.200932692156794 1 1 + 19064261 19065012 19064521.273 19063553 19065092 + gene protein_coding_gene FALSE TRUE AT1G51410.1 cinnamyl-alcohol dehydrogenase, putative (CAD) similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase similar to cinnamyl-alcohol dehydrogenase, putative (CAD) [Arabidopsis thaliana] (TAIR:AT5G19440.1); similar to putative cinnamyl alcohol dehydrogenase [Malus x domestica] (GB:AAC06319.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0450442108415893 -0.510588574155754 0.619838020888391 1 -0.479775689565135 4.21505673748176 -0.0450442108415893 0.0575306525929677
AT4G10610_at 8.57648441938174 8.79798440982682 8.49533291919682 8.53175596334241 8.9670825767853 8.46786655266228 8.52238171115199 8.65249393723458 8.3030958391821 8.62312148484098 8.90653708632376 8.81758020892668 8.58055053834335 8.58374397149178 8.51842289882202 8.75805017502055 8.35536794801612 8.23190600257324 8.4833690679594 0.125331057746621 0.120489619786117 0.129173127327766 0.123351258301022 0.127096399719067 0.129776603874062 0.126785522675907 0.124967322871651 0.131402765222932 0.124594850564601 0.121023712904060 0.121988722204558 0.121417663931970 0.133452174448535 0.12231226343984 0.121063585410515 0.131343955378879 0.126656619615248 0.124543928987729 4 4|0 +|/ 6558087 6559112 6558663.1 6557173 6559591 + gene protein_coding_gene FALSE TRUE AT4G10610.1|AT4G10610.2 RBP37 (RNA-BINDING PROTEIN 37); RNA binding RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif). similar to CID11, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G32790.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to CID11, RNA binding [Arabidopsis thaliana] (TAIR:AT1G32790.2); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0511655533133957 0.510359217662500 0.619993413286849 1 -0.479891296404072 17.158363803373 0.0511655533133957 0.0973630075432061
AT1G26900_at 1.81598790956743 2.48880384665944 1.85655792560790 2.02749571263882 2.00917011171712 2.03372125290262 1.59014014870467 2.0907947716815 2.10843620702647 2.24537914261179 2.05393908110802 1.94262977563921 1.89384552330820 2.07910721249356 2.09979552273065 1.77348391039968 1.98816664100542 1.97470092819740 1.89959924388069 0.172783918864377 0.178355443595343 0.190636056035685 0.178960593985989 0.177645520574496 0.178565974226762 0.179468625919074 0.171585322615032 0.180508987573827 0.182603189455530 0.177098056153878 0.171585322615032 0.1834689169295 0.176392722818042 0.171585322615032 0.174894679325568 0.175768030468261 0.182086939360708 0.177561813030634 1 1 - 9319819 9320257 9320027.909 9319743 9321461 - gene protein_coding_gene FALSE TRUE AT1G26900.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22410.1); similar to Pancreatic ribonuclease; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE87347.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0617291876246783 -0.510219029584655 0.620088402324091 1 -0.47996193372794 4.01917401270156 -0.0617291876246783 0.148177526342968
AT3G54430_at 2.48894502261962 2.23148040226608 2.57304828507754 2.51782072599383 2.10506410308268 1.98702507622082 2.75606243961838 2.88461363532561 2.57542514378834 2.84660292840424 3.56503551918589 3.90835181066635 3.14859943707705 3.58646867007517 3.02980102373564 3.67248848009258 2.65324780536065 3.13579473990044 3.43877848688177 0.250455236081911 0.241371594485396 0.242658032542168 0.241117528872142 0.239107495604632 0.243216390644718 0.235303324483982 0.235471187667703 0.241729696420300 0.247172961481657 0.25175348381081 0.240282922195119 0.236327417888917 0.252759507439046 0.235303324483982 0.242076110580929 0.236999062429957 0.251226579406823 0.24433011268784 3 3 - 20158207 20158803 20158562.273 20158079 20159105 - gene protein_coding_gene FALSE TRUE AT3G54430.1 SRS6 (SHI-RELATED SEQUENCE 6) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. similar to LRP1 (LATERAL ROOT PRIMORDIUM 1) [Arabidopsis thaliana] (TAIR:AT5G12330.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77322.1); similar to Os01g0954500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045433.1); contains InterPro domain Zinc finger, LRP1-type; (InterPro:IPR006510); contains InterPro domain LRP1, C-terminal; (InterPro:IPR006511); contains InterPro domain Protein of unknown function DUF702; (InterPro:IPR007818) 0.0446677110199487 0.510204336979406 0.620098358200929 1 -0.47996933590319 5.58854527233549 0.0446677110199487 0.0546690435917392
AT1G16760_at 0.308202551510764 0.211725775930222 -0.068981213135615 0.179832442605456 0.343686388610485 0.265151652784279 0.33737658617165 0.135861919856985 0.190581176486231 -0.134149038410807 0.687826596878112 0.359315145155482 0.00051558848949397 0.206192739615079 0.412003435687919 0.132057353024773 0.44651699292355 0.05313466230284 0.328663846658585 0.196865891802487 0.184388609851894 0.186345443779575 0.196489777207012 0.189033961406843 0.188661754434057 0.195278329810545 0.188261461202189 0.194600715609894 0.189156924657113 0.196732967390979 0.184388609851894 0.198222531212139 0.194801171562476 0.184388609851894 0.185279310426113 0.199836258650327 0.201338669839043 0.196707098718077 1 1 + 5736712 5737226 5736949.182 5734227 5737300 + gene protein_coding_gene FALSE TRUE AT1G16760.1 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT2G24370.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20200.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G78940.1); similar to serine threonine kinase [Zea mays] (GB:AAL59227.1); similar to stk [Zea mays] (GB:AAV64214.1); similar to serine threonine kinase 1 [Zea mays] (GB:AAK73111.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.045230297681866 0.510008973553268 0.620230746250076 1 -0.480067741294377 0.421887334293941 0.045230297681866 0.0594441810405607
AT1G33780_at 9.38802189130793 9.72108063303823 9.48136126290095 9.60702365597886 10.176940074134 9.8243874116795 9.83612628241914 9.83624750488957 9.4486276941496 9.7293877027247 9.68023878667568 9.5912569513826 9.56211089260233 9.57890100615618 9.49757885606744 9.69060763098575 9.18685998024453 9.8625306520194 9.50145639896181 0.109230802067214 0.108897089822702 0.109420740998932 0.106182902765477 0.105023005860078 0.111117695809119 0.110677211368359 0.106794239106712 0.130764535622220 0.104787211693189 0.108803916043869 0.103990131156979 0.103990131156979 0.118513281337125 0.108318446723274 0.103990131156979 0.126613574529497 0.107587227287014 0.108318595993535 1 1 - 12244802 12245353 12245119.182 12244565 12246168 - gene protein_coding_gene FALSE TRUE AT1G33780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29240.2); similar to Protein of unknown function DUF179 [Medicago truncatula] (GB:ABE94310.1); contains InterPro domain Protein of unknown function DUF179; (InterPro:IPR003774) 0.049247842915493 0.509867687241064 0.620326497702237 1 -0.480138885506672 19.3044408527746 0.049247842915493 0.08670238254278
AT1G60500_at 0.806340814143648 0.573068818330071 0.490798394201847 0.704900981636238 0.747618745684904 0.582036173053427 0.731992718426572 0.597067839060788 0.67155280917548 0.680496586157576 0.419613537568343 0.464097118107418 0.809920183328736 0.671110763123226 0.509890078751566 0.546121363074231 0.964705210960233 0.435153743008748 0.594839270840022 0.206814722778295 0.198621020784557 0.198621020784557 0.203708771967429 0.198621020784557 0.205317471958711 0.201074380279729 0.199845366385061 0.208618198296692 0.201413527380497 0.200359618885071 0.200109507576009 0.215308540919666 0.203302558494366 0.206737831671816 0.199043406843772 0.201104612245889 0.201209346561105 0.204030697241393 1 1 + 22296894 22297452 22297187.182 22295247 22297629 + gene protein_coding_gene FALSE TRUE AT1G60500.1 dynamin family protein similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G60530.1); similar to OSIGBa0103I21.1 [Oryza sativa (indica cultivar-group)] (GB:CAH65868.1); similar to Os03g0260000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049617.1); similar to Dynamin central re (GB:ABE80642.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.0460826814151059 -0.509766530575838 0.620395057323452 1 -0.480189811078376 1.27999775479952 -0.0460826814151059 0.0660964733322492
AT2G45420_at 0.463830523248671 1.00293429871374 0.880971769050446 1.56828041649079 0.484690925501017 1.02186305495154 0.244805968223929 0.814904748460967 1.43171564736578 1.08936680089201 1.02537959023194 1.19129906147408 0.511358771285263 0.67513036860129 1.29077318256963 0.934723344969945 0.879389323369373 1.51792665920034 1.11022448640452 0.210155234183371 0.2132622553322 0.207271243695826 0.21243328160048 0.209145831449663 0.206579475724087 0.209027793039786 0.209218236746356 0.218854551692359 0.212698931350540 0.21677056782517 0.212552119114618 0.207873815011004 0.219435043010447 0.209923117556792 0.205239720669035 0.213009598995164 0.205239720669035 0.210357159694519 2 2 + 18725859 18727493 18726833.545 18725422 18727803 + gene protein_coding_gene FALSE TRUE AT2G45420.1 LOB domain protein 18 / lateral organ boundaries domain protein 18 (LBD18) Identical to LOB domain-containing protein 18 (LBD18) [Arabidopsis Thaliana] (GB:O22131;GB:Q8W1D7); similar to LOB domain protein 30 / lateral organ boundaries domain protein 30 (LBD30) [Arabidopsis thaliana] (TAIR:AT4G00220.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAL77143.1); similar to Os03g0246900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049546.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.0750722748309577 0.509375378754733 0.620660198615735 1 -0.480386639373125 1.91712680438022 0.0750722748309577 0.203042063803849
AT3G55700_at 2.30133087571129 1.85316827250579 2.48573901224168 2.21229011002338 1.73773037286219 1.94256540467250 1.64361106455384 1.66811622512513 1.85273104834779 1.99729138957514 1.71820165221988 1.57363243204436 1.60375188876248 1.38754980405013 1.6663923898489 1.74911907221911 1.74058750500971 1.78995578329818 1.48839901393819 0.204197888002745 0.191799774920156 0.185819066704797 0.188575338111276 0.185213008301567 0.185213008301567 0.186099909755091 0.191760868147636 0.194725291657541 0.187581216062079 0.192428565754103 0.185213008301567 0.187034813210471 0.194874493103333 0.192582443208866 0.189317179972218 0.190189927688489 0.185213008301567 0.185213008301567 3 3 + 20683664 20684224 20683899.636 20682094 20684351 + gene protein_coding_gene FALSE TRUE AT3G55700.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G55710.1); similar to putative UDP-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC16461.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0510998070602398 0.509244227041542 0.620749112094262 1 -0.480452603019253 3.69713023382129 0.0510998070602398 0.0976160102182699
AT2G44680_at 5.78639825907928 6.33919602788887 5.90680036338399 6.16711795794015 6.99277805981006 5.92607953501904 6.16473056245603 6.4454796875938 5.83706136369445 5.70313113222817 5.90149323504161 5.75281490193132 5.79671544189858 6.4825291043565 4.80412966746473 6.37836068758597 5.50705005385649 5.38617498039193 5.43203214075637 0.287263105481109 0.289075805599566 0.31940415465681 0.295294683656390 0.291404342929569 0.296823080284693 0.30233475920602 0.287263105481109 0.300366405420888 0.292559519080923 0.291255938370088 0.287263105481109 0.287263105481109 0.287263105481109 0.301294765721946 0.287263105481109 0.311383885232536 0.290479251468991 0.29232940928789 2 2 - 18433995 18434850 18434276.889 18433621 18435432 - gene protein_coding_gene FALSE TRUE AT2G44680.1|AT2G44680.2 CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein kinase CK2/ protein kinase CK2 regulator|CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein kinase CK2 regulator Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock. Identical to Putative casein kinase II subunit beta-4 (CK II beta-4) [Arabidopsis Thaliana] (GB:O80507;GB:Q941C4); similar to CKB3 (casein kinase II beta chain 3), protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT3G60250.1); similar to protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum] (GB:CAD32500.1); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) 0.0789965708116904 0.509170394282001 0.620799169335294 1 -0.480489730608578 11.9203559172925 0.0789965708116904 0.218214756060838
AT4G04210_at 10.1774961158314 10.3667303053909 10.2650721918439 10.4310208295762 10.3620851124690 10.065883726928 10.4842684446331 10.4543722945009 10.0965591682934 10.3445968389615 10.4823731032140 10.3250694331351 10.1570999294806 10.1801966939382 9.90688475877985 10.0629436069638 10.0805289987429 10.0733749764902 10.0426987203395 0.0844479650233556 0.0832177653374147 0.0855162089356894 0.0819456974229617 0.0823203529406393 0.0920098563106898 0.0819456974229617 0.0838709444987001 0.0938721811340001 0.0819456974229617 0.0826077700770872 0.0831112366584066 0.0850682102771322 0.091962482682756 0.0857088771160254 0.0819456974229617 0.0918157334502189 0.0905994590231193 0.0819456974229617 4 4 + 2031071 2031636 2031463 2030317 2031850 + gene protein_coding_gene FALSE TRUE AT4G04210.1 PUX4 (LANT UBX DOMAIN-CONTAINING PROTEIN 4) Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4) similar to PUX3 (LANT UBX DOMAIN-CONTAINING PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT4G22150.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain SEP; (InterPro:IPR012989) -0.0462136482449393 -0.509127803788858 0.620828045812197 1 -0.4805111453656 20.4857880510423 -0.0462136482449393 0.0674641503701744
AT2G23510_at 1.99331048229237 1.73813625972374 2.33540880047341 2.24103597411467 1.70831703375300 1.80796405157462 2.02727037850410 1.69443013641965 2.15352577104049 2.30573744522159 1.72541011104016 2.33486248191813 2.20013349405928 1.93911021508048 1.99584462591349 1.65249717800676 2.43306006710990 1.87089560198641 2.36242683082407 0.186093471193093 0.195079716640118 0.191963885627776 0.191909996349273 0.186026772176816 0.186655496850139 0.190453334779135 0.194035274654996 0.19564707530361 0.191003611225483 0.192699098690947 0.186026772176816 0.186026772176816 0.186026772176816 0.188248178964849 0.189048327106177 0.195060776654493 0.188881019736144 0.186444063072347 2 2 - 10018681 10019150 10018874.364 10018597 10020613 - gene protein_coding_gene FALSE TRUE AT2G23510.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT2G25150.1); similar to Transferase [Medicago truncatula] (GB:ABE89145.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.0475126548643827 -0.509098775011964 0.620847727789156 1 -0.480525740234582 4.08967084173264 -0.0475126548643827 0.0763663916144837
AT1G33400_at 5.84232151552027 5.78827751927632 5.95057725042974 5.83835221547428 7.20702005244656 6.39133414833492 6.20580711534849 6.0961104803802 5.95101330967615 5.84919216959451 5.31525400814314 5.51204401976084 4.95592510467784 5.89887381908332 4.7172747392152 5.52472659029145 5.21177292777608 5.35876569725324 5.59016914976299 0.225435169630794 0.219421856301218 0.220560138005341 0.22138666214616 0.219421856301218 0.225010224159442 0.224534092388566 0.226950793858709 0.227860913673661 0.223003758398677 0.220463992021185 0.224328681424119 0.228206697269893 0.231538878814650 0.226370464002768 0.219421856301218 0.24299167218952 0.225656598146126 0.22406273545506 1 1 - 12104909 12105838 12105395.545 12104764 12109504 - gene protein_coding_gene FALSE TRUE AT1G33400.1 tetratricopeptide repeat (TPR)-containing protein similar to TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4), binding [Arabidopsis thaliana] (TAIR:AT3G58620.1); similar to Os10g0506800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065013.1); similar to TPR Domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54526.2); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0606350853480131 -0.508941763946136 0.620954189189853 1 -0.480604667368572 11.7192856152945 -0.0606350853480131 0.144050941019840
AT3G42550_at 0.499504901560355 0.330269496894109 0.164253367827936 0.681608496471119 0.876564218726456 0.415009027285049 0.676928016194457 0.479917411925569 0.861108518707267 0.618527139758736 0.235950042248552 0.554158582341893 0.40153018687343 -0.0791968647764196 0.460266306611434 0.33104285114688 1.08180946051876 0.474791889854387 0.273834264633025 0.202999975583259 0.197288510016379 0.198465385138496 0.200259424063483 0.200622412089015 0.209839908051622 0.198122053637144 0.196372130531036 0.21104695379107 0.203352711452639 0.200406817872031 0.201841632968243 0.205675425779275 0.206074399454069 0.205871759787421 0.200944607560722 0.206182549810153 0.199451504142945 0.199581024557167 3 3|0 -|/ 14677447 14678831 14677896.333 14676983 14680121 - gene protein_coding_gene FALSE TRUE AT3G42550.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G08210.1); similar to Os01g0777200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044420.1); similar to putative aspartic proteinase nepenthesin II [Oryza sativa (japonica cultivar-group)] (GB:BAD53242.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.0571210482899799 -0.508861167840566 0.62100884092793 1 -0.480645172851772 1.02402388271998 -0.0571210482899799 0.128123965738395
AT4G15755_at 1.14134556626846 1.14034291288608 1.11531920275318 0.898070943458367 0.895272093450227 1.27326635722380 1.23266924632913 0.683375972715795 0.969988838706697 1.39765613091381 0.969882576011095 0.972567900219293 1.31284840651478 0.900198821616168 1.16571879514093 0.96147769213716 1.28068583577618 1.48894178936533 1.34926625822717 0.187553753601817 0.193293666967448 0.198783012836056 0.195247868998921 0.188566815321091 0.187113578011019 0.187377597999894 0.187668856017586 0.204193259503094 0.190546437981669 0.192248733421438 0.197843871182960 0.193073450218974 0.187113578011019 0.194718827207630 0.191726236606133 0.193147678540617 0.187539929496169 0.188660857201798 4 4 - 8970750 8971249 8970954.545 8970652 8971521 - gene protein_coding_gene FALSE TRUE AT4G15755.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G16510.1); similar to SRC2 [Glycine max] (GB:BAA19769.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.0556907287567071 -0.508800416621412 0.62105003754709 1 -0.480675700788498 2.23271310507572 -0.0556907287567071 0.121360630550398
AT3G08780_at 5.43096830405053 6.42476504050746 5.35329110650618 5.56246223501507 6.67794701912327 5.67195955785008 5.41272075311169 5.98470028830354 5.7945516558317 4.56806537825514 5.5251642956542 5.11301383798184 5.33625061258162 5.31009937482666 4.07074785215771 4.90969383709626 4.14212551825256 4.40494787838430 4.75284480793426 0.279186756481622 0.279186756481622 0.279186756481622 0.282015158701477 0.282978052802411 0.283989361924233 0.283670224247425 0.279186756481622 0.297278132287196 0.283849303338021 0.279186756481622 0.283313680456691 0.285595616798759 0.279186756481622 0.279186756481622 0.283498194257709 0.287923396230155 0.279411588196916 0.279186756481622 3 3 - 2666568 2666896 2666764.429 2666085 2667539 - gene protein_coding_gene FALSE TRUE AT3G08780.1|AT3G08780.2 similar to hypothetical protein [Medicago sativa] (GB:AAL15647.1) -0.0919277483382323 -0.50864294867751 0.621156826037728 1 -0.480754813473433 10.7598481288288 -0.0919277483382323 0.266445510015649
AT3G52770_at 1.15320413278442 1.26798595648934 1.55801236167816 1.19156820800054 1.01359809887281 1.36478269040932 0.883387374141719 1.48047910852328 1.49121885831974 1.6942607600938 1.33808015891463 1.68344869178117 1.86399002718204 1.48830377796727 1.49617554428821 1.05586547201164 1.17984861399775 1.64196749953853 1.12323032886915 0.176811543794227 0.173531832207224 0.175398292618746 0.178072202267974 0.171929519787016 0.178875162991241 0.174736810672343 0.175160509306260 0.174589632599159 0.172530728158793 0.182018660235231 0.173925176250098 0.174323963721843 0.176698299202819 0.174435467627955 0.171929519787016 0.172147115562194 0.180336461323223 0.175310682619224 3 3 - 19568884 19569047 19568960 19568699 19569985 - gene protein_coding_gene FALSE TRUE AT3G52770.1 similar to Os02g0530500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047020.1); similar to Os04g0411200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052732.1); similar to hypothetical protein LOC_Os12g05560 [Oryza sativa (japonica cultivar-group)] (GB:ABA95824.1) 0.0589747604357227 0.508097783506917 0.621526605805145 1 -0.481028527470198 2.69147555251464 0.0589747604357227 0.137063810283060
AT4G27980_at 1.21674093783473 0.685454593512303 1.08640047819014 1.18861567414195 1.10343146422314 1.14745465218644 1.24625498988509 1.47197014859996 1.34882031494387 1.22633039213136 1.46018575627398 1.32966479991053 1.44890973748876 1.24275867532458 1.65087326216797 1.07898874883072 1.26184235366541 1.00623888551167 0.973349408523815 0.197588426091812 0.203549359769765 0.196578247766782 0.210382509295791 0.199744540223465 0.204208933479830 0.205042595835037 0.209825925012718 0.200782925567314 0.20059907649547 0.201294060984582 0.198533630201781 0.19898239196027 0.212310985880261 0.196976755334092 0.199560263462066 0.203529561613740 0.211466315414527 0.202896551701265 4 4 + 13922818 13923256 13923059.455 13921683 13923576 + gene protein_coding_gene FALSE TRUE AT4G27980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04960.3); similar to heat shock protein DnaJ N-terminal domain-containing protein [Musa acuminata] (GB:ABF69988.1); contains InterPro domain Apolipophorin III-like; (InterPro:IPR011000) 0.0517349026288758 0.508015365789302 0.621582518380968 1 -0.481069883105344 2.38967344195324 0.0517349026288758 0.101734728952816
AT4G14300_at 8.85860997128844 9.11119608777965 8.5685087796664 8.788788662553 8.95384295977683 8.84395928785819 9.09084201639266 9.55815619453936 8.97833348972363 8.75350523730655 9.14665646392909 9.21073739161483 9.32307226168226 9.22199305760693 9.10271511707054 8.87039762660314 8.670650638038 9.03815054681717 8.69937618924347 0.100855043533103 0.0970393669575598 0.101417591304445 0.0978069098573897 0.101650102916331 0.100893451526418 0.0995348425155988 0.0950703663474356 0.102010482856045 0.0974449749201231 0.0988649158882124 0.0950331086421233 0.0969445286943331 0.100253689920757 0.101089832453248 0.0964680776678417 0.106304806293638 0.104507740691887 0.103986398451350 4 4 + 8232259 8232755 8232472.455 8231013 8232987 + gene protein_coding_gene FALSE TRUE AT4G14300.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT2G33410.1); similar to Os10g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064824.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0516422396036971 -0.507865799238403 0.62168399142527 1 -0.481144916459667 17.9134637999875 -0.0516422396036971 0.101319025574452
AT1G05440_at 1.06460331667169 0.76701855454642 0.87293223629851 0.7795971295254 0.580378283324387 1.12105860923043 0.598622558028254 0.590974905904372 1.34102978574059 1.03745999576214 0.75524230203763 0.546180770985907 1.18156730838951 0.912691057067695 0.796510934139254 0.752306143078774 1.37339311470760 1.00607622984341 0.934925716848067 0.175995514860537 0.177455177776970 0.174534503780279 0.176230671528153 0.175820241177194 0.179740498399378 0.174150707864318 0.176404133244314 0.189191483942463 0.175910317006057 0.186347592358728 0.179362307706222 0.177504720091286 0.188353110521576 0.183407155729532 0.181652737981544 0.17953179201561 0.188743099178113 0.180218959157724 1 1 - 1596376 1597232 1596721.909 1596006 1597847 - gene protein_coding_gene FALSE TRUE AT1G05440.1 similar to Os03g0747100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051255.1) -0.052894559722691 -0.507665309398041 0.621820026142016 1 -0.481245463668824 1.80688210684859 -0.052894559722691 0.108025738317832
AT3G43190_at 1.78864741977380 1.82132478006266 2.00381223208706 2.55572561740603 1.46772548794565 1.75162071978092 1.86626241618226 1.16503623131146 1.987985154769 2.54871480343350 2.46458415246812 1.77088150444290 1.88052220914128 2.43115254287698 2.20068634138341 2.18649806836517 2.31055111339247 2.6828154711716 2.65141964662608 0.224615988168151 0.212884452778257 0.221429841849178 0.222339416875832 0.218414191743508 0.222722526118023 0.216317825347794 0.217687322482773 0.218656206200200 0.217743616060962 0.221693871398808 0.218382812284821 0.2141458830342 0.214918555606568 0.217546777505652 0.212884452778257 0.227467123919081 0.241409969032558 0.222472120914835 3 3 - 15190327 15190852 15190633.636 15190008 15194977 - gene protein_coding_gene FALSE TRUE AT3G43190.1 SUS4; UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups Encodes a protein with sucrose synthase activity (SUS4). similar to SUS1 (SUCROSE SYNTHASE 1), UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TAIR:AT5G20830.2); similar to SUS2 (SUCROSE SYNTHASE 2), UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G49190.1); similar to SUS3, UDP-glycosyltransferase/ sucrose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G02280.1); similar to sucrose synthase [Citrus unshiu] (GB:BAA89049.1); similar to Sucrose synthase (Sucrose-UDP glucosyltransferase) (GB:P49040); similar to Sucrose synthase (Sucrose-UDP glucosyltransferase) (Nodulin-100) (GB:P13708); contains InterPro domain Sucrose synthase; (InterPro:IPR000368); contains InterPro domain Sucrose synthase, plants and cyanobacteria; (InterPro:IPR012820); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.0646624298007081 0.507534938426133 0.621908492305862 1 -0.481310825478989 4.12102000990945 0.0646624298007081 0.162154238620813
AT1G01900_at 2.11110116776745 2.3038302994105 1.30548655760581 1.23348730128320 1.57123790680301 1.74073377131907 2.32893053013452 2.1548124372785 2.68575183519883 1.99782645042348 3.67298727533887 4.36552326430343 2.04183125931157 3.2307967377087 4.59019541129684 2.70456280683251 1.77329480588674 3.11695524033148 2.85835282293816 0.238466399654890 0.236819477439700 0.240029441186827 0.241921543129204 0.244977484979965 0.238010227972404 0.236819477439700 0.241859969931703 0.239911065369157 0.239354789358599 0.239624311318427 0.247870192911314 0.236819477439700 0.245438571507074 0.261587655464723 0.236819477439700 0.242158225760035 0.244680976065406 0.242782131650485 1 1 + 312537 312972 312717.727 310316 313130 + gene protein_coding_gene FALSE TRUE AT1G01900.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G51750.1); similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to OSIGBa0147H17.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66960.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.0444454552277621 -0.507091473481675 0.622209462183948 1 -0.48153303829525 4.6942001896068 -0.0444454552277621 0.0550994661335978
AT4G31360_at 3.22999551963055 2.81872575077180 2.93062196508893 3.05029827281138 2.64915103419012 2.65559211954197 2.83832867794396 3.00589178273704 3.24632459000294 3.30369798554326 3.70002435218839 3.47259449866313 3.36079378712916 3.24709240934089 3.61189172989119 3.13223470219282 3.22362242243042 3.84617941896615 3.62892958028493 0.196647487152095 0.194351690311566 0.199480647320016 0.198202119172772 0.193930912772185 0.194428285364806 0.199311481170075 0.195086966797402 0.196317041103237 0.191600631266516 0.198449373329337 0.198637561574999 0.206381271799253 0.191811937034641 0.197333210015088 0.204813156739168 0.1985894979418 0.196220381932605 0.19994803527577 4 4 + 15222005 15223236 15222328.545 15221849 15223633 + gene protein_coding_gene FALSE TRUE AT4G31360.1 selenium binding similar to selenium binding [Arabidopsis thaliana] (TAIR:AT2G24440.1); similar to Os05g0250500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055027.1); similar to Os11g0704000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068541.1); similar to Selenoprotein H (GB:Q8IZQ5); contains InterPro domain SelT/selW/selH selenoprotein; (InterPro:IPR011893) -0.0477497358530891 -0.506275598259594 0.622763367289461 1 -0.481941377342222 6.31846974886146 -0.0477497358530891 0.0796021588014951
AT4G14960_at 10.2237624263197 10.1157545415339 9.8330635792317 9.68801635332912 9.85115803801626 9.73325736912834 10.2438974091263 10.2857320380398 10.5517591183085 10.2277984111025 10.9522583051572 11.0708179443955 10.473972955537 10.6796637621067 11.141506337112 10.4077786512826 10.2843472378637 10.7778164361515 10.3240830519297 0.073835501821436 0.0677841827882805 0.0741273574860512 0.0676956950889573 0.0690499641017516 0.0732764870963437 0.0695153279308403 0.0677783743156882 0.0717518270397341 0.0698934047815142 0.0684671715368128 0.068459765534199 0.0698193791002932 0.0727387757623098 0.0721249044985339 0.0676242917673815 0.0718595894983087 0.0694892408230893 0.0730693494688264 4 4 - 8549176 8549324 8549230.364 8548488 8550449 - gene protein_coding_gene FALSE TRUE AT4G14960.1|AT4G14960.2 TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to TUA4 (tubulin alpha-4 chain) [Arabidopsis thaliana] (TAIR:AT1G04820.1); similar to Tubulin alpha chain (GB:P33629); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE93145.1); similar to putative tubulin alpha-2/alpha-4 chain [Brassica napus] (GB:AAQ81585.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) -0.042636379454031 -0.506056245666327 0.622912329410753 1 -0.482051054960863 20.5425304180812 -0.042636379454031 0.0380543643950577
AT2G32510_at 2.94859185776804 2.85447497240228 3.11496839196617 3.07689526801943 2.78331509033474 3.32624658460344 3.31102693702789 2.77256508676051 3.57263587087053 3.49442776521233 3.31160206841886 3.25232325009208 3.19795962603824 3.03756699280604 3.48646408330453 2.77121038655624 3.12393974365524 3.36105284118676 3.16991017634289 0.222867566121428 0.224103763474405 0.218677878136323 0.221254046166856 0.235125938324198 0.233099849668448 0.227623147327185 0.225674312593922 0.218128811450488 0.221420223711720 0.222989993296602 0.222222166938043 0.220930175409955 0.223006476459275 0.22106429691349 0.221971713982666 0.226186149084098 0.226031606128315 0.223059576134424 2 2 - 13806029 13806447 13806263.273 13805898 13807016 - gene protein_coding_gene FALSE TRUE AT2G32510.1 MAPKKK17 (Mitogen-activated protein kinase kinase kinase 17); kinase member of MEKK subfamily similar to MAPKKK18 (Mitogen-activated protein kinase kinase kinase 18), kinase [Arabidopsis thaliana] (TAIR:AT1G05100.1); similar to Os01g0699100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043977.1); similar to Putative NPK1-related protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM23244.1); similar to Os05g0545300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056211.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0579340549466987 -0.505848317828683 0.623053549279032 1 -0.482154978418679 6.3260552626849 -0.0579340549466987 0.133490482350458
AT4G15370_at 1.23104155575863 1.36858068650722 1.57434796436349 1.32878555803652 1.24017567955913 1.48690407040741 1.28876078107014 1.49771991395702 1.12466693635695 1.62043428063471 1.30240989732281 1.1815020166433 1.19223859362118 1.54708591450741 1.23464761403626 0.996947003989572 1.55244385141192 1.46719926961997 1.08472228172652 0.226574237213236 0.224881399296116 0.230999957533796 0.227852466402641 0.224881399296116 0.228640595156678 0.224881399296116 0.229958646105942 0.234277467527152 0.229038811197482 0.232765812670032 0.226942701810737 0.227694738932476 0.234580507671924 0.224881399296116 0.224881399296116 0.225606932084144 0.234572861540960 0.224881399296116 4 4 - 8773789 8774506 8774167.091 8773786 8779685 - gene protein_coding_gene FALSE TRUE AT4G15370.1 pentacyclic triterpene synthase, putative similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT5G48010.2); similar to pentacyclic triterpene synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78500.1); similar to ATPEN1 (Arabidopsis thaliana pentacyclic triterpene synthase 1), catalytic/ lyase [Arabidopsis thaliana] (TAIR:AT4G15340.1); similar to beta-Amyrin Synthase [Panax (GB:BAA33722.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); similar to beta-Amyrin Synthase [Panax (GB:BAA33461.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.0468645105031893 0.505673705080952 0.623172154536192 1 -0.482242219449952 2.6699980777325 0.0468645105031893 0.0741830918461706
AT3G21630_at 8.29932081357996 8.54014253064912 8.31364024207483 8.44924633585554 8.06155442022834 7.78131358378696 7.48772840153518 7.65118800645911 8.13879009058026 7.89460820220713 7.87556047654435 8.13392340515545 7.58558986898376 7.67304469013947 7.49799082000746 7.6750846211123 7.52961083286003 7.58898107920207 7.80279969552691 0.174650837578204 0.176677687292278 0.179213294638445 0.17965781940595 0.173488812026619 0.177797710570923 0.173098804934619 0.184572498266271 0.18717425946543 0.182002237938583 0.184415429279163 0.168696745170608 0.174292706543001 0.178276445733668 0.174603131407532 0.176285213961645 0.184348952451919 0.191528440980434 0.178307564902652 3 3|0 -|/ 7615555 7616615 7616018.4 7615392 7618588 - gene protein_coding_gene FALSE TRUE AT3G21630.1 protein kinase family protein similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51940.1); similar to LysM domain-containing receptor-like kinase 7 [Medicago truncatula] (GB:AAQ73158.1); similar to Nod-factor receptor 1a [Lotus japonicus] (GB:CAE02589.1); similar to Nod-factor receptor 1b [Lotus japonicus] (GB:CAE02590.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) -0.0467911988784582 -0.505569589239773 0.623242880269325 1 -0.482294224781810 15.8932030686155 -0.0467911988784582 0.0737542006349492
AT1G79830_at 8.46578242059868 8.67465161837703 8.46646268101481 8.68100350182017 8.90028615326339 8.4026050014728 8.66705330891103 8.54435016201638 8.38978861678078 8.4167823514069 8.66857060305747 8.7859134175761 8.3988891411548 8.65351344674187 8.59053675552022 8.80711396917632 8.5493049923486 8.48862417410483 8.81072311478361 0.116582190254064 0.115099411647843 0.122329171800893 0.116391788867672 0.114135241164545 0.118919083607656 0.116198034396855 0.115761882595946 0.127545651416371 0.118166985076649 0.114869738126108 0.118012102203511 0.115560818477219 0.117519632767809 0.118872668144689 0.117751459612992 0.123486809675360 0.117946779256754 0.121969842367553 1 1|0 -|/ 30033271 30034447 30033825.4 30032753 30038687 - gene protein_coding_gene FALSE TRUE AT1G79830.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to Os05g0559900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056303.1); similar to Tropomyosin; tRNA-binding arm; t-snare [Medicago truncatula] (GB:ABD32289.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain t-snare; (InterPro:IPR010989) 0.0516701208599732 0.50555830783895 0.623250543946315 1 -0.482299859172676 17.1787275259928 0.0516701208599732 0.102730457536787
AT3G21465_at 4.6444856141884 5.01286217847692 4.20771153918489 4.25032256565195 3.45742747328868 4.20619985316223 3.30448764139838 4.49629215850906 3.27400553275472 2.83920518801068 2.56080373623515 3.11981696333241 3.30803920865906 3.21368967191228 3.81421603662277 3.38056770033004 3.59434452933433 3.53537417460042 3.35635125783602 0.295217463668303 0.296727999741972 0.302661255158998 0.293722405616252 0.307537716789825 0.309091964620522 0.280435810987231 0.300122574544714 0.278554529142193 0.298212440790764 0.278554529142193 0.282103848539127 0.287830387375326 0.293734490744979 0.287885089982029 0.278554529142193 0.295470146701202 0.294148780970870 0.281582488458635 3 3|0 +|/ 7561220 7561831 7561548.667 7560726 7563472 + gene protein_coding_gene FALSE TRUE AT3G21465.1|AT3G21465.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15640.1); similar to adenyl cyclase [Nicotiana tabacum] (GB:AAB87670.1) -0.087390348613376 -0.50547809578137 0.6233050349157 1 -0.482339916893546 7.43366220906362 -0.087390348613376 0.251886700412926
AT3G19860_at 8.64812356012374 8.68705815091283 8.538370282588 8.4585987613484 9.40362679223424 8.93836252042138 8.79411173204744 8.40201689016211 8.87113762872538 8.45972515821211 8.4414289651047 7.9490944350788 8.28381376983955 8.49027515296853 8.20478693114645 8.37322720288666 8.38225537120639 8.25592319824971 8.48179318836337 0.130806126167592 0.124898097624855 0.133774487210563 0.132117239592065 0.134552483678909 0.132715371481298 0.129621245815006 0.127977950982229 0.144072768678571 0.124898097624855 0.126757302533174 0.125744875736999 0.124898097624855 0.126622254833812 0.130867322907379 0.128246820107785 0.135293370828293 0.130751132114213 0.126233599273121 3 3 + 6905257 6905808 6905460.364 6903839 6906132 + gene protein_coding_gene FALSE TRUE AT3G19860.1|AT3G19860.2 basic helix-loop-helix (bHLH) family protein|DNA binding similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G36060.2); similar to Os02g0433600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046730.1); similar to Os02g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046728.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G36060.1); similar to Os02g0433600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046730.1); similar to Os02g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046728.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.0523530121435236 -0.50544253493889 0.623329193444096 1 -0.482357673964829 17.1846932296016 -0.0523530121435236 0.106409426526538
AT4G32320_at 6.87140738316188 6.71733083855782 6.90766647469509 6.49340440650874 7.67133718417334 6.67775707856175 8.11728373127985 6.86436736230371 5.91755507653135 6.88014736750545 6.61409057039423 6.27128126632085 6.41950621388082 6.42060167126349 6.85907947800551 6.56768309286108 6.67902189123302 6.24422462912341 6.69684287422549 0.185172144048076 0.187820579515235 0.183296477000376 0.194286447592554 0.194723764864359 0.197361811872328 0.203089497284515 0.193598784946262 0.206912537707971 0.193956613882773 0.187248510900643 0.189596980347884 0.188084416278452 0.183632666200397 0.183296477000376 0.184056412186810 0.195238611548149 0.203484913937662 0.183296477000376 4 4|0 +|/ 15603308 15604621 15604015.25 15602727 15605406 + gene protein_coding_gene FALSE TRUE AT4G32320.1 APX6 (ASCORBATE PEROXIDASE 6); L-ascorbate peroxidase Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to Putative L-ascorbate peroxidase 6 (EC 1.11.1.11) (AtAPx08) (APX6) [Arabidopsis Thaliana] (GB:Q8GY91;GB:O49360); similar to APX2 (ASCORBATE PEROXIDASE 2), L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT3G09640.2); similar to peroxidase family protein (ISS) [Ostreococcus tauri] (GB:CAL54759.1); similar to Os08g0522400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062280.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.0969008569799392 -0.504670791120682 0.623853597549585 1 -0.482742746527576 13.5438782446000 -0.0969008569799392 0.287101468395587
AT1G14730_at 1.87918931980076 2.13764058142396 1.63162055435610 1.86970413964667 1.35952410543559 1.69667342328301 1.52029841108424 2.00558223673326 1.93850472686366 1.70772935341734 1.78387621567301 2.88551482835012 1.85951939335023 2.03317110245322 2.60817997706712 2.58623198803554 2.26507311080569 2.13974109156095 2.09724844795667 0.199560152456124 0.193289261350774 0.197122873971178 0.192445934637895 0.190277270792712 0.196852110730344 0.199883723501824 0.190568419149067 0.196009325949588 0.191821831758987 0.193437608492779 0.190129209694694 0.195525423639451 0.202452985860913 0.194671470793874 0.190230582261551 0.194064258135303 0.203226879160651 0.200827500529409 1 1 + 5073992 5074496 5074333.545 5073100 5074774 + gene protein_coding_gene FALSE TRUE AT1G14730.1 similar to ACYB-2 (Arabidopsis cytochrome b561 -2), carbon-monoxide oxygenase [Arabidopsis thaliana] (TAIR:AT4G25570.1); similar to cytochrome [Mesembryanthemum crystallinum] (GB:AAD11424.1); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593); contains InterPro domain Cytochrome b561; (InterPro:IPR004877) 0.0546861028762737 0.504076827484168 0.624257347497838 1 -0.483038732118406 3.85485791621605 0.0546861028762737 0.118974408302544
AT1G36050_at 8.0333288141226 8.05408041763712 7.79842447091704 7.41968347720413 8.70239014884192 8.01849534693461 7.68704180530907 7.1590887158427 7.79115458307884 7.29399747923227 7.63686773783555 7.51082753529189 6.92942853376599 7.42582630785108 7.57637739478122 6.49262566790955 6.55990436115757 6.8956722390685 7.44113571375935 0.202249762990878 0.199172657726093 0.203124686203408 0.201429319781947 0.203917974123983 0.216921138456786 0.195511899510989 0.198695230914681 0.207844490950778 0.199929087872654 0.205785144007847 0.198219253303541 0.207681333525440 0.204732329555637 0.198046213235854 0.197135902272339 0.229012291431271 0.208327600719653 0.201802968307419 1 1|0 +|/ 13453237 13454176 13453665.444 13451416 13454467 + gene protein_coding_gene FALSE TRUE AT1G36050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22200.1); similar to Serolo (GB:ABF95668.1); similar to Os04g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052965.1); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) -0.0644789735346318 -0.503991843741057 0.624315126201878 1 -0.483081054344763 15.1776685567167 -0.0644789735346318 0.163288968058256
AT4G24840_at 6.97540939786487 6.91855878132849 6.74571947860601 6.42209740056758 7.06476701732829 6.43715392444846 6.76509286612801 6.47247281673355 7.01789268075095 6.8342859041319 7.23093901938403 7.42298425523493 6.98134006192819 7.3062761234142 7.20675842022903 6.85933475409716 6.79367913800405 6.92836130135741 6.72987354723224 0.186453653685704 0.18149842568332 0.186587468251955 0.192960873108293 0.18658318271673 0.180484133037719 0.188436042750574 0.183303799740694 0.199667404848957 0.182270218253693 0.184778772109849 0.181718624906353 0.176778468311368 0.195442865533775 0.199787332545435 0.179713276562005 0.192114393868558 0.180688255628495 0.192433677929337 4 4 - 12796553 12797648 12797021.091 12796257 12800948 - gene protein_coding_gene FALSE TRUE AT4G24840.1 similar to Os03g0849600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051898.1); similar to Low density lipoprotein receptor (ISS) [Ostreococcus tauri] (GB:CAL52868.1); contains InterPro domain COG complex component, COG2; (InterPro:IPR009316) 0.0575380399458099 0.503986811858808 0.624318547358229 1 -0.483083560028407 13.7011055494979 0.0575380399458099 0.132642525458538
AT4G27010_at 2.40882026016577 2.39495590343804 2.32810567227783 2.29188271269968 2.33945170930078 2.07297995460478 1.78144134258545 1.72365330510101 1.73023629247791 1.67842310545046 1.47098395298154 1.56782611489873 1.88340875863085 1.74232819327828 2.00032926144949 1.63595340258205 2.19411289446234 1.8577722061483 2.25636066774416 0.204244663908071 0.198062552136735 0.204585982467040 0.201618433402403 0.204028906420983 0.198062552136735 0.205723788785656 0.199348618416603 0.200477631217172 0.20217598613144 0.198062552136735 0.202313460752160 0.19972641831134 0.203303827020218 0.203397761162204 0.203569035126748 0.205867496914452 0.199465922488479 0.198062552136735 4 4 + 13567364 13568182 13567808 13558472 13568302 + gene protein_coding_gene FALSE TRUE AT4G27010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72270.1); similar to OSIGBa0148A10.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66826.1); similar to LOC443605 protein [Xenopus laevis] (GB:AAH73005.1); similar to OSJNBa0053K19.25 [Oryza sativa (japonica cultivar-group)] (GB:CAE03517.2); contains domain FAMILY NOT NAMED (PTHR13500); contains domain ARM repeat (SSF48371); contains domain gb def: LOC443605 protein (Fragment) (PTHR13500:SF4) 0.0433183177806534 0.503526167602935 0.624631776727297 1 -0.483312842349137 4.00887604249406 0.0433183177806534 0.0476610818568011
AT3G17490_at 1.34728093920575 1.52362610428740 1.48452058212886 1.48306975244549 1.07497670536542 1.83565093662415 1.36921988913433 1.64637739889913 1.75196184866426 1.33914209723429 1.59768871964668 1.29684828810498 1.59326924370612 1.50878977401223 1.35873088641492 1.29337192366717 1.38163134345575 1.36112587563619 1.53348590800129 0.206437786088555 0.209488536184965 0.206461291372252 0.210711745265012 0.208582687809313 0.21006164527574 0.218729697287856 0.207710501492652 0.214555572323784 0.214739782685367 0.218003282514858 0.210448713240012 0.218866115989759 0.214078142985052 0.215304169764431 0.206437786088555 0.212891728512872 0.210805155746046 0.209514894388639 3 3 + 5985403 5985945 5985645.636 5984833 5985999 + gene protein_coding_gene FALSE TRUE AT3G17490.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G17540.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE85962.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0598347666050568 -0.50346576144063 0.624672857524786 1 -0.483342894287448 2.95332126757654 -0.0598347666050568 0.143389265446200
AT3G48040_at 4.72574389052487 4.6984923680597 3.84576649082873 4.28315007989188 4.47603278944733 4.85962502331897 4.13335397335385 4.55974081782892 5.00060177054111 4.76989794969546 4.81534953342346 4.96983887285079 5.13465491202077 4.86868085072744 5.2024569521708 5.04401126283747 4.32566201211266 4.74825199701574 4.74071264081688 0.20247467513701 0.209219067053746 0.202625630139617 0.198416790929735 0.197787038277434 0.197048104159347 0.200550295786589 0.201621637914030 0.213435436328197 0.196389896397897 0.212091513204841 0.199857315847626 0.196389896397897 0.203805413602545 0.210214282670662 0.196389896397897 0.207644046170052 0.199426289296475 0.20443224825724 3 3|0 +|/ 17742581 17743962 17743358 17742465 17744477 + gene protein_coding_gene FALSE TRUE AT3G48040.1 ARAC8/ATROP10/ROP10 (rho-related protein from plants 10); GTP binding / GTPase Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling. Identical to Rac-like GTP-binding protein ARAC8 (GTPase protein ROP10) (ARAC8) [Arabidopsis Thaliana] (GB:Q9SU67;GB:O82482); similar to ARAC10/ATRAC10/AtROP11 (rho-related protein from plants 11), GTP binding [Arabidopsis thaliana] (TAIR:AT5G62880.1); similar to small GTPase [Gossypium hirsutum] (GB:ABG66964.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.0558233272215197 -0.503305128094699 0.624782106937319 1 -0.483422792354052 9.31058022223814 -0.0558233272215197 0.124910922569121
AT2G42430_at 1.29669575069613 1.17045267045741 1.53897023146444 1.72782484671464 0.848469747188517 1.74199344247625 1.42074717856117 1.51044969174638 1.00148633507962 1.56296454240082 1.66473488349005 1.43171179222453 1.04597588884265 1.51648550611452 1.38596480132862 1.11188990746396 1.07502757668113 2.02188260022924 1.61788496299043 0.214742368174041 0.208911100393689 0.213267767491950 0.209694871858092 0.210213089531017 0.212338563871390 0.21037519082791 0.218049376404439 0.218894206413085 0.220736910442743 0.21634276433459 0.211807944019028 0.226616575821671 0.209386887779753 0.218804053247176 0.222252995272320 0.211761360420620 0.209754764951106 0.208486240825094 2 2|0 +|/ 17670921 17672194 17671663.3 17670522 17672370 + gene protein_coding_gene FALSE TRUE AT2G42430.1 LBD16 (ASYMMETRIC LEAVES2-LIKE18) LOB-domain protein gene LBD16. This gene contains one auxin-responsive element (AuxRE). Identical to LOB domain-containing protein 16 (LBD16) [Arabidopsis Thaliana] (GB:Q9SLB7); similar to ASL16/LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29, LOB DOMAIN-CONTAINING PROTEIN 29) [Arabidopsis thaliana] (TAIR:AT3G58190.1); similar to Os02g0820500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048543.1); similar to Os08g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062526.1); similar to adventitious rootless1 [Oryza sativa (japonica cultivar-group)] (GB:AAV49505.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) 0.0636627084094514 0.50310451782088 0.624918558559414 1 -0.48352254065168 2.80736097809835 0.0636627084094514 0.160300799062110
AT4G02390_at 2.58312503120807 2.56161857995321 2.47110502578759 2.68817398070749 2.66101489217260 2.30770797372748 2.58816576539460 2.72654130835102 3.16535561985815 2.82865209620697 2.96819505835646 3.46449938119491 3.14552862856447 2.77912147892975 3.35228879363690 2.66754942636968 2.98475287854453 3.29446144667106 2.72247051450519 0.192513112535874 0.18888190912052 0.194023858342729 0.190982899240111 0.193749282660506 0.189414475964078 0.202780048617923 0.194527766528835 0.195287909413922 0.198262086366734 0.194713092680497 0.18888190912052 0.193016844178122 0.199380094367851 0.197685583529971 0.189994312392933 0.197145344572541 0.190383406337700 0.203277774834808 4 4|0 +|/ 1053063 1053735 1053357.571 1049957 1054065 + gene protein_coding_gene FALSE TRUE AT4G02390.1 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE); NAD+ ADP-ribosyltransferase Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . Identical to Poly [ADP-ribose] polymerase 2 (EC 2.4.2.30) (PARP-2) (ADPRT 2) (NAD(+) ADP-ribosyltransferase 2) (Poly[ADP-ribose] synthetase 2) (PARP2) [Arabidopsis Thaliana] (GB:Q11207;GB:O81294); similar to poly (ADP-ribose) polymerase, putative / NAD(+) ADP-ribosyltransferase, putative / poly(ADP-ribose) synthetase, putative [Arabidopsis thaliana] (TAIR:AT2G31320.1); similar to Poly [ADP-ribose] polymerase 2-A (PARP-2-A) (ADPRT 2-A) (NAD(+) ADP-ribosyltransferase 2-A) (Poly[ADP-ribose] synthetase 2-A) (GB:Q5Z8Q9); similar to Poly [ADP-ribose] polymerase 2 (PARP-2) (ADPRT 2) (NAD(+) ADP-ribosyltransferase 2) (Poly[ADP-ribose] synthetase 2) (GB:O50017); similar to putative poly(ADP-ribose) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD52929.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain Poly(ADP-ribose) polymerase, regulatory region; (InterPro:IPR004102); contains InterPro domain WGR; (InterPro:IPR008893); contains InterPro domain PARP, catalytic; (InterPro:IPR012317); contains InterPro domain Poly(ADP-ribose) polymerase, catalytic region; (InterPro:IPR001290) 0.0468473449410487 0.502980959129631 0.625002608347676 1 -0.483583958209479 5.56720275969121 0.0468473449410487 0.0757408345608599
AT3G30530_at 0.699877955763494 1.10326752076537 0.839674581244 1.11670431253030 0.717601153797672 1.28047764904274 1.09465492957418 1.00767303175652 0.945036721783924 1.39684105877169 1.56564881742452 1.13101955137638 1.64280611081929 0.829215780582409 1.47108638788988 1.01199509368426 1.26722124858146 1.55978643313168 1.28341716355181 0.186115871354347 0.191200164865548 0.184705852533118 0.190181568107516 0.188323156759438 0.188871828136286 0.190823367131331 0.192951681214314 0.193675742042640 0.184705852533118 0.184705852533118 0.186889212587195 0.185010437024852 0.196760212116739 0.184705852533118 0.193329168238326 0.193079705283667 0.187164005035984 0.195410377886243 3 3 + 12141991 12142459 12142177.273 12141991 12142512 + gene protein_coding_gene FALSE TRUE AT3G30530.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G38800.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96902.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0568309222946051 0.502835043818162 0.625101873222013 1 -0.483656470136927 2.24163092979530 0.0568309222946051 0.129948314495924
AT2G36000_at 4.96179462078074 5.93808077496068 4.70117556324248 4.76506506267763 6.22722115121529 5.67717958522717 6.11882633588944 6.28841111511062 5.56741859562622 5.18810921079967 5.70789216279523 6.33413421699753 5.61706416236062 6.06244186178122 5.75703577723351 6.57085088733618 5.79980359978962 6.14474322651384 6.22430810154384 0.245218697126825 0.237683919593856 0.242423848972592 0.240922891495182 0.234966253434986 0.263263500445070 0.243062496564293 0.255609995152213 0.265945007885359 0.241743412384187 0.237142034356579 0.240422976071006 0.248294378719061 0.256414433212237 0.237670426707681 0.233886364901851 0.24844776533505 0.247407180444677 0.248567253605564 2 2 + 15124645 15125128 15124853.455 15124154 15125776 + gene protein_coding_gene FALSE TRUE AT2G36000.1|AT2G36000.2 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G34620.1); similar to Os03g0360600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050155.1); similar to mTERF-like protein [Brassica napus] (GB:ABC70867.1); similar to Os03g0785200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051481.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.0724087184501672 -0.502649478093258 0.625228123143071 1 -0.483748657241785 11.4143147958918 -0.0724087184501672 0.196439626495519
AT1G20530_at 0.781477492794439 1.41868462283762 0.955807620810412 1.17169969416228 1.16839165333230 1.1073013488932 1.15414084549217 1.29537494958134 0.95170300710165 1.19834352672933 1.11589731189919 1.31740713331796 0.935314131534314 1.06722452863892 1.07018754631727 1.11551179085872 1.05649317390931 1.08870466445239 1.28011464693502 0.190868688712927 0.201010227579504 0.199958797201469 0.198342963834244 0.189055054051289 0.196344672431284 0.189055054051289 0.194381383676659 0.214118297421056 0.192384570980179 0.189752902351665 0.202141180308918 0.194253606990546 0.192670477010839 0.190804673007949 0.194894951852867 0.192772323667553 0.202862918054767 0.18908027026198 1 1 - 7108362 7108879 7108677.818 7108360 7110367 - gene protein_coding_gene FALSE TRUE AT1G20530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17110.1); similar to Os09g0547300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063849.1); similar to bzip-related transcription factor -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46467.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) -0.0545819617580844 -0.50225542064321 0.625496262398444 1 -0.483944313495188 2.25122457617364 -0.0545819617580844 0.119435480215090
AT4G02460_at 2.8367783240627 2.54527057668192 3.2685480840822 2.64292367831869 2.71163090546427 2.43505194223817 2.67152881797145 2.53123384147778 1.89207262136531 2.29836127916528 1.87665600176754 2.5229648825808 2.08606439449759 1.76354887279157 2.10056468565120 2.00085867528708 1.79863524593939 2.19805934020077 2.63615877666041 0.210784012452799 0.207538761381770 0.209258336345739 0.218430316908306 0.213953520857127 0.212381033109821 0.206963975277050 0.210440720735543 0.212366633142099 0.213041360845588 0.222010465844755 0.205262431378811 0.209990064496029 0.218914980537227 0.206018093057975 0.215509629559035 0.227357527818916 0.20756473469218 0.219660278327329 4 4|0 -|/ 1076360 1077319 1076703.2 1076136 1080667 - gene protein_coding_gene FALSE TRUE AT4G02460.1 DNA mismatch repair protein, putative similar to ATMLH1 (Arabidopsis thaliana MutL-homologue 1) [Arabidopsis thaliana] (TAIR:AT4G09140.1); similar to ATP-binding re (GB:ABE85041.1); similar to Os02g0592300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047292.1); contains InterPro domain DNA mismatch repair protein, C-terminal; (InterPro:IPR013507); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain DNA mismatch repair protein; (InterPro:IPR002099) -0.0568880587900679 -0.501464743903504 0.626034454941506 1 -0.48433645766114 4.8648457236554 -0.0568880587900679 0.130946619340183
AT4G01190_at 0.848164052737089 1.18353972707053 1.14248302428089 1.22858643742796 0.659762198314002 0.765089825790648 0.549446124504837 0.711907479746944 1.08103627252912 1.45962351594431 1.41110320269743 0.736066162199034 1.12145339763827 1.29111184488370 1.09668548507201 0.780856764164821 1.50110789493443 1.46033381739643 1.63488739022349 0.21350450618523 0.216154058536788 0.213480683436824 0.211518984077951 0.217175776078222 0.216998968905658 0.222448123294723 0.214240386057261 0.221134657674793 0.213448322246884 0.212874127225155 0.209301147446354 0.214437501470958 0.209163006038421 0.212913685416469 0.211878262870840 0.209109035266843 0.214874334484511 0.216801228732633 4 0|4 /|- 504213 504816 504484.429 504211 506131 - gene protein_coding_gene FALSE TRUE AT4G01190.1 ATPIPK10 (ARABIDOPSIS PHOSPHATIDYLINOSITOL PHOSPHATE KINASE 10); 1-phosphatidylinositol-4-phosphate 5-kinase Type I phosphatidylinositol-4-phosphate 5-kinase, subfamily A. Preferentially phosphorylates PtdIns4P. Expressed in flowers and inflorescence stems. Identical to Putative phosphatidylinositol-4-phosphate 5-kinase 11 (EC 2.7.1.68) (AtPIP5K11) (1-phosphatidylinositol-4-phosphate kinase 11) (PtdIns(4)P-5-kinase 11) (Diphosphoinositide kinase 11) (PIP5K11) [Arabidopsis Thaliana] (GB:Q9M149;GB:O04613); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01460.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498) -0.0456466065019242 -0.50107609858839 0.62629907894504 1 -0.484528994769343 2.16946679907857 -0.0456466065019242 0.0686523886619404
AT4G33470_at 9.03854400047983 9.18192400065225 9.10778128753693 9.13729566961554 9.59625386605106 9.17988905746572 9.6648895068368 9.30415395070264 9.41632244045928 9.2198447794649 9.57684830823327 9.4519590164186 9.25387196614949 9.21597856781959 9.07962362168747 9.65683302943628 9.519263125813 9.33128149230442 9.09230026726866 0.143818472618697 0.138029496750892 0.146972380822734 0.141658282483661 0.141994614083128 0.149471970930423 0.144764862950080 0.138463685788290 0.145463465669064 0.150451382601652 0.13973513243607 0.139684732610935 0.145470911181907 0.151657912926721 0.149585204780603 0.138029496750892 0.149298111076766 0.154982134011802 0.152325865639643 4 4 - 16102837 16103640 16103187.818 16102598 16105496 - gene protein_coding_gene FALSE TRUE AT4G33470.1 HDA14 (histone deacetylase 14); histone deacetylase similar to HDA15 (histone deacetylase 15), histone deacetylase [Arabidopsis thaliana] (TAIR:AT3G18520.2); similar to Os12g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066322.1); similar to Histone deacetylase complex, catalytic component RPD3 (ISS) [Ostreococcus tauri] (GB:CAL55176.1); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286) 0.0504060003756253 0.500490097950064 0.626698183843034 1 -0.484819034263547 18.5906063607745 0.0504060003756253 0.098643999841239
AT3G06100_at 2.89771185967965 2.65766453237978 2.85228436806704 2.70175183779665 2.75222271623122 2.95762783267335 3.1742188900317 2.65235142232243 3.69131151736612 3.49208899480810 3.65731542969756 3.43425820845452 3.68923705086536 3.23208758610861 3.95598768116912 3.20245286739771 2.86437921693237 3.32963496444184 3.30360101987475 0.251144714573584 0.252172471993403 0.24678189640203 0.247950103806997 0.256621972490812 0.252876388104164 0.25405576291724 0.266490666096175 0.262324845827545 0.251000611695703 0.245465060883095 0.245424049525231 0.252111858152844 0.254679113409186 0.250489936640845 0.245872324673617 0.2561147215789 0.248315181236309 0.256027991705946 3 3|0 -|/ 1841536 1842496 1842019.556 1841177 1843099 - gene protein_coding_gene FALSE TRUE AT3G06100.1 NIP7;1/NLM6/NLM8 (NOD26-like intrinsic protein 7;1); water channel Identical to Probable aquaporin NIP7.1 (NOD26-like intrinsic protein 7.1) (NIP7.1) [Arabidopsis Thaliana] (GB:Q8LAI1;GB:Q9M8K8); similar to NIP4,1/NLM4 (NOD26-LIKE INTRINSIC PROTEIN 4,1), water channel [Arabidopsis thaliana] (TAIR:AT5G37810.1); similar to NOD26-like membrane integral protein ZmNIP1-1 [Zea mays] (GB:AAK26750.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.0522565195637991 -0.500235035674187 0.626871937030148 1 -0.484945175787324 6.28889733388925 -0.0522565195637991 0.108738341016118
AT3G11050_at 2.45367523852713 1.93867802410635 2.66064660449195 1.91593301994781 1.93807842255175 2.04680241518778 2.08766274608574 2.57119622700303 2.59474291549441 1.80151849260129 1.92303752425567 2.10887655249089 2.03457274611930 2.23954455940844 2.16258028235014 2.20464076370689 2.35982701084418 2.60712064193592 2.25732573639181 0.181687979308511 0.183755445411314 0.186284419154308 0.191478002621895 0.184696359718576 0.185134485200727 0.180398060020088 0.190181412830947 0.189289778742946 0.182801366996401 0.187771129782765 0.181129829299147 0.181362088720607 0.183939089848214 0.18388213589979 0.18507841539382 0.187823127814937 0.185823074185200 0.197963960047808 3 3|0 +|/ 3463856 3465113 3464415.6 3463604 3465512 + gene protein_coding_gene FALSE TRUE AT3G11050.1 ATFER2 (FERRITIN 2); ferric iron binding Identical to Ferritin-2, chloroplast precursor (EC 1.16.3.1) (FER2) [Arabidopsis Thaliana] (GB:Q9SRL5;GB:Q42288;GB:Q8L9N6;GB:Q8WHW4); similar to ATFER4 (FERRITIN 4), ferric iron binding [Arabidopsis thaliana] (TAIR:AT2G40300.1); similar to ferritin [Conyza canadensis] (GB:CAH05075.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) -0.0676376573713235 -0.500050416834445 0.626997717596397 1 -0.485036441199949 4.41302778305508 -0.0676376573713235 0.178627790810200
AT4G17580_at 1.69368194109124 1.68167618672285 1.98674622074326 1.59789262381671 1.70407577747406 1.59376622564823 1.72727290488062 1.73074551706564 1.63703866515173 1.74888788757517 1.80484366538095 1.38994046011462 2.16149475875662 1.77569931082303 1.5740892402108 1.41040696766521 2.20310575447007 1.90382746843689 1.71028886406754 0.220603916366379 0.218454628770158 0.224593463396991 0.221688270680682 0.223264751745498 0.221884761458004 0.217515808465153 0.222487012783095 0.225495629667742 0.220604936434305 0.221215500032535 0.221610057009596 0.225990044786370 0.230077860831247 0.217515808465153 0.217515808465153 0.217751898871300 0.232264458801979 0.223958822820012 4 0|4 /|- 9789950 9790494 9790224.3 9789802 9791158 - gene protein_coding_gene FALSE TRUE AT4G17580.1 Bax inhibitor-1 family protein / BI-1 family protein similar to ATBI-1 (ARABIDOPSIS BAX INHIBITOR 1) [Arabidopsis thaliana] (TAIR:AT5G47120.1); similar to bax inhibitor, putative [Brassica oleracea] (GB:ABD65015.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.0457317777239694 0.499974551856409 0.627049407896882 1 -0.485073935382558 3.45281438742887 0.0457317777239694 0.0699816273091409
AT1G50110_at 2.25954742365170 2.03829461430600 1.66214010946149 1.97123300561698 1.93290980439999 1.96564549810887 1.93069595030778 2.43987318296542 2.22997137370096 1.8581138314695 2.0051852902245 2.58605803195619 2.21186780204958 1.79928670612716 2.60540730128463 2.23537484310803 2.13613064695079 2.28440309641346 2.07319930092330 0.211184960877398 0.211184960877398 0.214599369840876 0.214925306095887 0.215034838394379 0.218689817567873 0.220471371677546 0.219408722970997 0.211184960877398 0.216756126740107 0.217104619741268 0.213529317799739 0.218397263923659 0.214942151490838 0.211411986120311 0.212462807758738 0.216475367440540 0.213092295215171 0.218078332688068 1 1 - 18561937 18562872 18562362.636 18561685 18563942 - gene protein_coding_gene FALSE TRUE AT1G50110.1 branched-chain amino acid aminotransferase 6 / branched-chain amino acid transaminase 6 (BCAT6) Identical to Branched-chain-amino-acid aminotransferase 6 (EC 2.6.1.42) (Atbcat-6) (BCAT6) [Arabidopsis Thaliana] (GB:Q9LPM9;GB:Q42148;GB:Q8L961); similar to aminotransferase class IV family protein [Arabidopsis thaliana] (TAIR:AT1G50090.1); similar to Branched-chain amino acid aminotransferase II [Medicago truncatula] (GB:ABE86590.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786) -0.0524589878389269 -0.499658003183431 0.627265109655238 1 -0.485230322443556 4.16840530700005 -0.0524589878389269 0.110107422641406
ATCG00670_at 11.6315709809734 12.4788005716257 11.9094106744657 12.2160941514320 11.6050885800523 11.6467178372470 12.0066840690195 12.4060734833275 12.6266314051217 12.8292322416681 13.0352797183377 13.2506392241010 12.8209202569915 12.8803775207082 12.7853461268623 12.8746393979052 12.438658386497 12.6320750876602 12.5977601966787 0.117125120444022 0.108757503602432 0.11780688564694 0.115761546039172 0.112238342155082 0.123856087376785 0.111050870802706 0.111657067865487 0.119504242549241 0.108596281864657 0.108606785543365 0.112860582542148 0.110238540530441 0.108628099682121 0.116011137071534 0.109865618564649 0.123237761048959 0.114915759082649 0.109264943299340 C C|0 -|/ 69930 71837 70619.4 69910 71882 - gene protein_coding_gene FALSE TRUE ATCG00670.1 Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). Identical to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) (clpP) [Arabidopsis Thaliana] (GB:P56772;GB:Q9XQZ9); similar to CLPR2 (Clp protease proteolytic subunit 2), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G12410.1); similar to ATP-dependent protease catalytic subunit [Forsythia europaea] (GB:ABG74755.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) -0.0656268908552828 -0.499254447247202 0.627540152481306 1 -0.485429557690097 24.7496966665374 -0.0656268908552828 0.170711003865265
AT1G54160_at 3.98444649472034 3.87458688921094 3.17690738750386 2.70474425758245 5.27210914533572 5.18047815407783 3.52511959521886 2.99875063408935 2.12790096774588 2.38690885325401 1.93551730176597 1.51894584466210 2.21621927450994 1.88056068056066 1.64522959199266 1.5200665533812 2.24679075657471 2.20532810799406 2.30542683219383 0.256737752672806 0.247988995178072 0.237738994089895 0.244413541948538 0.259451135086704 0.249685601521179 0.245836691557629 0.237738994089895 0.237738994089895 0.243835253716918 0.247693818465541 0.240065785994875 0.239410304544409 0.242601292573523 0.249377714675842 0.242581158875458 0.240498012050558 0.248738192587319 0.237738994089895 1 1|0 -|/ 20221249 20222009 20221492.222 20221003 20223119 - gene protein_coding_gene FALSE TRUE AT1G54160.1 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-5 (AtNF-YA-5) (NFYA5) [Arabidopsis Thaliana] (GB:Q9SYH4); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT3G14020.1); similar to putative transcription factor [Oryza sativa (japonica cultivar-group)] (GB:BAC84851.1); similar to CCAAT-binding transcription factor, subunit B [Medicago truncatula] (GB:ABE81531.1); similar to Os07g0608200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060240.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.0552519395070074 0.498271236725783 0.628210505433127 1 -0.485914326428945 5.92439006054812 0.0552519395070074 0.124847597445537
AT4G08370_at 0.0199060914144787 -0.16801580559035 -0.66901665299002 0.177423279348779 0.203528923829029 -0.212825924347915 0.0998912757917694 -0.497153802363462 0.870179518060723 0.150985578405054 0.0418113989617724 -0.081502699262407 0.238560394808771 0.335201256197668 0.161432597349941 0.135255883611723 0.610274949035513 0.363716169799620 0.118365017591440 0.212919166752163 0.212628824935053 0.214236811623311 0.218844200241477 0.222899242813563 0.212628824935053 0.2166906483301 0.212628824935053 0.218902211716942 0.214911108653155 0.216803064650655 0.213952710440973 0.214700175182343 0.218866889578222 0.220104351848114 0.216666895620356 0.21846443424601 0.217743217401597 0.218333546925079 4 4 - 5301978 5302636 5302287.455 5301959 5303311 - gene protein_coding_gene FALSE TRUE AT4G08370.1 proline-rich extensin-like family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G26240.1); similar to hydroxyproline-rich glycoprotein precursor (GB:AAA87902.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706) -0.0715645804463605 -0.497705606426432 0.628596311115251 1 -0.486192796332238 0.171935730719154 -0.0715645804463605 0.195910520530144
AT3G32190_at 1.6069778127888 1.36930123470726 1.66989326687696 1.66108751604932 0.959217539389403 1.32696835120756 1.24355199727315 1.15121096272797 1.90362018228406 1.44982056931617 1.91961817164478 1.43217641714363 2.02716150643330 1.99414039290355 1.43047163128251 1.65424962624945 1.69829538954758 1.63009602777375 1.72137414263251 0.228954132537378 0.231303545461782 0.228183716126125 0.226899412966176 0.228955847971041 0.233459784290408 0.224433113799086 0.228825028806869 0.225702443564551 0.230295342134723 0.229518654712509 0.228089850588493 0.224730814845337 0.224457221083244 0.231915153335134 0.224433113799086 0.224433113799086 0.229348385977738 0.229893726854939 3 3|0 -|/ 13167003 13167449 13167148.5 13166991 13168270 - gene protein_coding_gene FALSE TRUE AT3G32190.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT5G32590.1); similar to ORF73 [Human herpesvirus 8] (GB:AAK50002.1); similar to ORF 73 [Human herpesvirus 8] (GB:AAB62657.1); similar to ORF73 [Human herpesvirus 8] (GB:AAD46501.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.0466011735672928 0.497573443323975 0.628686473774455 1 -0.486257819183028 3.08096664018584 0.0466011735672928 0.0774572305978425
AT1G68670_at 9.77927181308447 9.89198271389856 9.806506044042 9.84448018874632 10.2462514599166 10.1840495300643 10.1066033068542 10.1643072958831 9.25808964787935 9.63973462547344 9.50652376937065 9.50256662918408 9.62399472334945 9.17639328072948 9.35462025879283 9.59651614916041 9.3810554049677 9.308142262396 9.74636178063283 0.136285096943114 0.129931094670837 0.134510400500441 0.132976378693122 0.129931094670837 0.138091419822671 0.129931094670837 0.129931094670837 0.136314806060767 0.135149067396484 0.135116518671451 0.132089304756996 0.129931094670837 0.146893208519247 0.141153033586915 0.129931094670837 0.142361111311123 0.134750387920684 0.135989277713272 1 1 + 25786655 25787511 25787118.818 25785692 25787739 + gene protein_coding_gene FALSE TRUE AT1G68670.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G25550.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os02g0325600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046702.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0410274674945699 -0.497491599626472 0.628742311332312 1 -0.486298077173534 19.4925758329307 -0.0410274674945699 0.025282932959984
AT4G28310_at 3.2600054092219 3.37614874569546 3.4250220368166 3.44731510116392 2.4819221650121 2.99973830404187 3.70316251683183 3.18150253194880 3.39460527375865 3.66093646464334 3.75374056297317 4.12545836592079 3.52930527794388 3.62828190367599 4.56063187291553 3.26867492058757 3.08838449874277 3.92449520121003 3.60978913574658 0.204967852711323 0.204266921782344 0.204266921782344 0.210310966360956 0.204266921782344 0.205846319598317 0.210418083025204 0.221961962067649 0.206893003533295 0.207401026004678 0.204891007660861 0.209473962134039 0.210978112732515 0.204266921782344 0.207227166291017 0.204266921782344 0.213934971311419 0.208611109964655 0.211827894914956 4 4 + 14017492 14018045 14017709.364 14017414 14018214 + gene protein_coding_gene FALSE TRUE AT4G28310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22207.1) -0.0559720575262568 -0.497300770437123 0.628872513263447 1 -0.486391919403165 6.8793430347811 -0.0559720575262568 0.128835559287924
AT4G26410_at 8.89559198109047 8.78254233439989 9.01281060649346 8.60874317602404 9.03749558625866 8.61548043590596 9.33547482608034 9.11369991969884 8.22807899209709 8.38274386026817 8.71534103281682 8.79412661223195 8.56113108393479 8.46231948149944 9.03912221439913 8.59295510175878 8.46242482004085 8.80587364856951 8.47413824092066 0.148327872299205 0.143821133253635 0.149945908943670 0.148266643996170 0.153032055047068 0.154003940342176 0.159929064445897 0.147143723639208 0.150495934688317 0.15231808317933 0.156616453935579 0.143821133253635 0.153564565687811 0.153918073324157 0.151171568095855 0.150396920794684 0.159421430109537 0.146793026066167 0.14578838897818 4 4|0 +|/ 13346972 13348776 13348133.125 13346663 13349025 + gene protein_coding_gene FALSE TRUE AT4G26410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90926.1) 0.0521566187487907 0.497148739589706 0.62897625269556 1 -0.486466657608931 17.4456375818281 0.0521566187487907 0.109904237233060
AT4G08602_at 0.764834216443484 1.10874674653938 1.07859762113644 1.28263452929766 0.79296232032481 0.244259599775311 0.821973347325394 1.35235524123202 1.73423445098429 0.725317938636616 1.40623615480037 1.71896731338551 1.41942275605850 1.05635246546617 1.46549436621843 1.18988645472409 1.34934433951487 1.27428569977034 0.771329353720029 0.353270251863664 0.352406340230290 0.352406340230290 0.352406340230290 0.365526672057936 0.399453827168007 0.377945062153157 0.352406340230290 0.397534101394737 0.389545880683645 0.397076448703075 0.383807864895283 0.352406340230290 0.375230454161416 0.352406340230290 0.352406340230290 0.432504545959121 0.352406340230290 0.352406340230290 4 4 - 5489451 5489833 5489658 5489256 5489971 - gene protein_coding_gene FALSE TRUE AT4G08602.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07523.1) 0.0603371211885636 0.497009894965222 0.629071001719805 1 -0.486534894468806 2.14927509018728 0.0603371211885636 0.149097064890754
AT2G19630_at 0.771998134681701 1.37398347650811 0.886491086851834 1.3326581124305 1.04616352683837 1.35116521838198 1.11990946258147 0.951216951227897 1.46343662659461 1.56192607999557 1.24034255200900 1.13643373387868 1.22270813095721 1.27076182808083 1.32936365514887 1.18723650257493 1.35684366873399 1.09770140549837 1.31847700979159 0.168534245887085 0.170014155872232 0.165385280898521 0.168251241689002 0.165911906275615 0.176134621106501 0.168533513105859 0.167218916364334 0.167370729796690 0.165518994436195 0.170401444953973 0.170829892250857 0.169543789987171 0.171230726120257 0.169604023171026 0.165340826428351 0.177057980952730 0.170255688171535 0.170300107422224 2 2 - 8497337 8497874 8497601.455 8497299 8498192 - gene protein_coding_gene FALSE TRUE AT2G19630.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G31080.1); similar to Probable disease resistance RPP8-like protein 2 (GB:Q9MAG6); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 3; (InterPro:IPR013187); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0589650788205743 -0.496846846866296 0.62918227636062 1 -0.486615003243742 2.44325849955648 -0.0589650788205743 0.143012123063541
AT4G31740_at 1.11116218082269 1.09779554851718 1.1832801546657 0.961293216535418 0.713536283323865 1.11555898507480 0.832733489525362 0.795701672338314 1.21219454297336 1.19774614535438 0.996708789009742 0.755211004924764 1.05798339858635 1.01656821626646 1.51626223881492 0.839077978489919 1.00254609029631 1.34837064898761 0.610736934444617 0.195409788558429 0.202748333131618 0.194645495326434 0.198071789569288 0.194645495326434 0.197749186634147 0.195951757983603 0.200136242516015 0.203503942769856 0.197151324827112 0.200360603924496 0.198228998325254 0.199184039687315 0.199224371540334 0.198229061220376 0.198083103328789 0.201155785215220 0.196263372878023 0.201082894298213 4 4|0 +|/ 15363794 15364314 15364057.9 15363784 15364355 + gene protein_coding_gene FALSE TRUE AT4G31740.1 similar to ATSLY1, protein transporter [Arabidopsis thaliana] (TAIR:AT2G17980.1); similar to Vesicle trafficking protein Sly1 (Sec1 family) (ISS) [Ostreococcus tauri] (GB:CAL52374.1); similar to Os03g0620800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050677.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.0468837209234747 0.496827231320665 0.629195663935026 1 -0.48662463906468 2.01312448464848 0.0468837209234747 0.079764961882159
AT2G36180_at 2.32365803374962 1.89501869108208 2.59965431689084 2.80831323462458 2.41225358930664 1.97869948361528 2.57948852001675 2.63682229440005 2.69366159796534 3.06771402217386 2.48070013581385 2.53761137282228 2.41418853019447 2.71511010557513 2.5305109382025 2.63036058563073 2.80667933343729 2.6144996600479 2.59990243943433 0.193081794173311 0.188298516861095 0.192649196909542 0.188781533996236 0.188258419587287 0.191942999065187 0.193169720366606 0.188911232381406 0.201325851767912 0.192585958775305 0.190967599631907 0.194251120365872 0.189823553993389 0.189497288811792 0.192565434735532 0.191813022161548 0.189991253885570 0.200260739535629 0.189118013975800 2 2 - 15180920 15181269 15181080.364 15180861 15181295 - gene protein_coding_gene FALSE TRUE AT2G36180.1 calmodulin-related protein, putative similar to calmodulin-related protein, putative [Arabidopsis thaliana] (TAIR:AT5G17470.1); similar to putative calmodulin-related protein [Medicago sativa] (GB:CAC34625.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.0524509162558893 -0.496197385743913 0.629625606427921 1 -0.486933847961955 5.09338865508074 -0.0524509162558893 0.111955340963882
AT1G36000_at 2.10077111317085 2.17698685857662 2.17245974700375 2.38417846291150 1.81030539601395 2.26835010233270 1.88301238488345 2.13085374176533 2.47095190151221 2.20823987885949 1.97997739166901 1.79351116250382 1.95398423222218 2.14383964308381 1.94691135503720 1.83808701783030 1.9725603719321 2.30519428348485 1.85315186420775 0.198243018468808 0.199286156308172 0.196825624345578 0.195500048991388 0.205439694085067 0.193774602125994 0.19864743967801 0.192507271435710 0.201407892231134 0.197149447820025 0.194835137878561 0.201693510336032 0.198067617985125 0.197663912606364 0.192507271435710 0.196669552312697 0.198092913322854 0.198304440120195 0.192507271435710 1 1 + 13423828 13424211 13424064.636 13423779 13424235 + gene protein_coding_gene FALSE TRUE AT1G36000.1 LOB domain family protein / lateral organ boundaries domain family protein (LBD5) Identical to LOB domain-containing protein 5 (LBD5) [Arabidopsis Thaliana] (GB:Q9C8V8;GB:Q4PT06); similar to LOB domain family protein / lateral organ boundaries domain family protein (LBD8) [Arabidopsis thaliana] (TAIR:AT2G19510.1); similar to lateral organ boundaries (LOB) domain protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB91791.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45187.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.0498861484198304 -0.496151591342551 0.62965687200364 1 -0.486956315151858 4.20046775770571 -0.0498861484198304 0.0981791964891823
AT1G29140_at 1.90363031419792 1.48313599539549 1.71619254505595 1.77232130939966 1.38439748552657 1.61012584321794 1.33534517241512 1.39117019416234 2.18501146339656 2.48097317084501 2.18536466326491 1.57136197680570 1.88445468566276 2.07193232192162 1.71797273639383 1.78351850465619 1.68833343990673 2.02704938780102 1.49461017496245 0.211131811660012 0.207947168903655 0.204971292730086 0.203862966484703 0.212308433000024 0.203862966484703 0.217015383122383 0.209148079349495 0.212196219965038 0.208586135339337 0.206357421690436 0.20854759896577 0.208213221327055 0.203862966484703 0.207052637248323 0.208526373219796 0.210507323122472 0.209063523361565 0.210694729623010 1 1 + 10179015 10179694 10179361.909 10178888 10180005 + gene protein_coding_gene FALSE TRUE AT1G29140.1 pollen Ole e 1 allergen and extensin family protein similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT5G45880.1); similar to Olee1-like protein precursor (GB:O49813); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.0474221308795469 -0.495958890282931 0.629788444640965 1 -0.487050834570893 3.53442989123117 -0.0474221308795469 0.0837190521300149
AT1G70400_at 1.27870829886496 1.2483659036359 1.22870016462251 1.19474871753849 0.94491633753599 1.50370694661097 1.09526754098128 1.06008983023491 1.47046481443604 1.66042500396031 1.13304397437529 1.34176289982946 1.37798664745736 1.52213652225023 1.49727428649358 1.50907779009658 1.43144086264511 1.75208245293317 1.64612228888251 0.203331222415995 0.197414739364535 0.196951829785182 0.195751569930045 0.192379367249838 0.193677929196654 0.192379367249838 0.197759837534206 0.197574389158712 0.198451556209411 0.200682162826131 0.198352164605976 0.198672723836737 0.192627750766852 0.194569899957294 0.195043984544796 0.194601209397428 0.197393014529683 0.20612554427396 1 1 - 26536283 26536746 26536482 26535503 26537123 - gene protein_coding_gene FALSE TRUE AT1G70400.1|AT1G70400.2 similar to EMB1220 (EMBRYO DEFECTIVE 1220) [Arabidopsis thaliana] (TAIR:AT1G60170.1); similar to Os04g0555400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053516.1); similar to Os07g0141600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058865.1); similar to mRNA splicing factor PRP31 (ISS) [Ostreococcus tauri] (GB:CAL52360.1); contains InterPro domain NOSIC; (InterPro:IPR012976) -0.0496632707175632 -0.49563971069158 0.630006403964054 1 -0.487207314471898 2.71328199180465 -0.0496632707175632 0.0972126433855372
AT1G15200_at 7.06801127591056 6.01031692952389 7.02031594973115 6.4194712467971 7.57752194167068 6.13562789580248 7.34607275882155 6.3312879876863 6.92564158082363 7.35939886755011 6.99042755553167 7.04134963950806 6.72019788079026 7.18031718696105 6.73630913938461 7.13729414741232 6.47230634734029 6.83075137999409 7.38923346375836 0.188647757812016 0.187544858459270 0.186758896694779 0.183050805578778 0.187648178438071 0.189568010906422 0.183709756244903 0.192783797953667 0.187815238281438 0.180405263559791 0.184210243030495 0.182991483116619 0.178999416332626 0.184492212436136 0.178073052857248 0.182985501032607 0.179888059284463 0.189188775149032 0.187036327626409 1 1|0 -|/ 5228517 5229412 5228917.333 5228331 5231056 - gene protein_coding_gene FALSE TRUE AT1G15200.1 protein-protein interaction regulator family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07258.1); contains InterPro domain Pinin/SDK/memA protein; (InterPro:IPR006786) -0.118413395290313 -0.495621383863739 0.630018919989305 1 -0.487216296407116 13.7952668134060 -0.118413395290313 0.370699823723780
AT4G25210_at 7.7149962381 7.8055567698223 7.56693463698151 7.55346905083499 7.95946124332596 7.56785064202348 7.61762700012398 7.6773006352975 7.29076351931695 7.46737952033427 7.67194613169516 7.89122412312835 7.52986225389554 7.47938319888507 7.5228243256658 7.78071234522667 7.47575807739793 7.1378797490568 7.52732815435249 0.139366569763147 0.134778091755709 0.137072020363574 0.134366425134199 0.135374405768862 0.147145573878932 0.140897775980703 0.140940905899068 0.147302191437759 0.144370402090717 0.135265448324438 0.136118307016232 0.140929717478901 0.144735799681225 0.140185637212331 0.133342296311860 0.137570433542450 0.136953783470792 0.139096954926012 4 4 + 12918992 12919507 12919323.818 12918338 12919752 + gene protein_coding_gene FALSE TRUE AT4G25210.1 transcription regulator similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00130.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.0453835550366122 0.495590447730594 0.630040047621118 1 -0.487231457415435 15.1777441138738 0.0453835550366122 0.0703595099069558
AT1G57943_at 1.82650919914214 2.38331463197859 2.14389798717967 2.16424295086846 1.68938369710354 1.90288611553423 1.74298485802064 1.66962601510904 2.60544872884912 2.33235433011191 2.30014672420345 1.78812846336959 2.30825859402847 2.06873983115485 2.25429584644644 1.95514653208327 2.45526473791321 2.51618016041269 2.19314433022026 0.226992556308835 0.225157745667087 0.236831257307987 0.231764529033640 0.229615192709162 0.229385423405556 0.228862732080255 0.233833781970447 0.239027255465245 0.232658499523287 0.239077091820840 0.232323790755905 0.235656758711321 0.225157745667087 0.225157745667087 0.235942037389161 0.23710534958997 0.235838496010344 0.236670304741421 1 1 - 21441344 21441831 21441628.455 21441267 21442554 - gene protein_coding_gene FALSE TRUE AT1G57943.1|AT1G57943.2 ATPUP17 (Arabidopsis thaliana purine permease 17) Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP18 (Arabidopsis thaliana purine permease 18), purine transporter [Arabidopsis thaliana] (TAIR:AT1G57990.1); similar to Os02g0689200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047783.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD07671.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.0508591701250314 -0.495276546615107 0.63025444391319 1 -0.487385241348393 4.231731968998 -0.0508591701250314 0.104036084185605
AT3G04170_at 2.31710500829448 2.44606626360778 2.15906732575077 2.52048946663706 1.67791099821960 2.14401119684136 2.15615517762776 1.98761309207375 2.36962932596892 2.60057762961121 2.63069220042336 2.6570199053757 2.89464345838326 2.64547076326352 2.96231725589998 2.41157387905331 3.05164403299013 2.34290650866893 2.51435783264655 0.254441713977335 0.254008559346793 0.253810990745316 0.250830268511884 0.267263898368165 0.261231453519247 0.270872744588080 0.258209900387811 0.257175983678834 0.250550507313322 0.248241792106523 0.248241792106523 0.257533850474822 0.248927307793351 0.256472874977876 0.24873173354376 0.253602040583261 0.266145106246666 0.252213483727777 3 3 - 1094858 1095253 1094989.727 1094628 1095672 - gene protein_coding_gene FALSE TRUE AT3G04170.1 germin-like protein, putative Identical to Germin-like protein subfamily 1 member 3 precursor [Arabidopsis Thaliana] (GB:Q9M8X3;GB:Q6GKX0); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT3G04150.1); similar to germin-like protein 3 [Vitis vinifera] (GB:AAQ63185.2); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.0516567162798176 0.494969631637268 0.630464103048696 1 -0.487535512941079 4.77324653108965 0.0516567162798176 0.108475433916184
ATMG00630_at 2.62012096423168 2.76570163214569 3.13823998825338 2.70643178905932 2.54372280617188 2.73847003461609 2.87952519307768 3.13837529010942 3.01786408844144 3.14830151868177 3.50335909842653 3.071372829567 3.17158839131705 2.82977547958426 2.87242296039849 3.25489575897946 2.76566576019414 3.35527522722355 3.23216898008709 0.195085484274206 0.189446662697019 0.195872913078719 0.194013450978076 0.194126761404545 0.187286152299834 0.193701984632608 0.194616192864575 0.197439198473335 0.187286152299834 0.197534393812675 0.18856874129617 0.197613606894066 0.196084145978556 0.187286152299834 0.197033161891821 0.201216209784240 0.197056556151571 0.203425135527805 M M + 183135 183405 183267.182 183111 183443 + gene protein_coding_gene FALSE TRUE ATMG00630.1 Identical to Hypothetical mitochondrial protein AtMg00630 (ORF110b) [Arabidopsis Thaliana] (GB:P93317) -0.0494741864457044 -0.494560203751222 0.630743843544176 1 -0.487735838704097 5.93423477918218 -0.0494741864457044 0.0967531752283353
AT2G10500_at 0.77269454429417 0.833735530185425 0.590923482181048 0.954000662826529 0.304049206146737 0.67844112320831 0.684915258068736 0.599699661728106 0.64949266853118 0.995341739074935 0.767241720645279 1.03432218585538 1.18921070226767 1.05181981729412 0.937933723892029 1.10467950328488 0.757429845402653 0.775895401999656 0.647468300020108 0.170191252665055 0.170191252665055 0.176477299805902 0.170452728412616 0.170191252665055 0.170191252665055 0.171394623447822 0.174618702063910 0.17473702382683 0.175755133587247 0.177387854612975 0.171045863119542 0.176275947284790 0.175494185076747 0.177503079565368 0.174721602291108 0.176731860660499 0.177785111317161 0.178778463698968 2 0|2 /|+ 4052116 4052487 4052267.222 4051809 4052829 + gene protein_coding_gene FALSE TRUE AT2G10500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G07430.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Protein of unknown function DUF223, Arabidopsis thaliana; (InterPro:IPR003871); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.0486540400298405 0.494479224985936 0.630799179233487 1 -0.487775441461015 1.53551619114102 0.0486540400298405 0.0920582573498374
AT3G12940_at 3.79105032738756 3.63310507951218 3.75237032656111 3.51818924925687 3.72252451420692 4.05428576945144 3.92596208937387 4.06656077332188 3.72839764135179 3.82957449870865 3.85398735589696 3.65316220572005 3.94171112293423 3.75543501982679 4.178710174576 3.43091977443427 3.94875685999741 4.09562628996579 4.01632162188966 0.2188085722716 0.221097063138199 0.215750172102049 0.210141237203465 0.220962966763894 0.231986681968111 0.214004621211073 0.218070759555541 0.222551228430299 0.210141237203465 0.215223893882151 0.216115852748997 0.222248056984703 0.217304687806980 0.216313354730420 0.221868575598796 0.230093643782402 0.210141237203465 0.211544384789030 3 3|0 -|/ 4130354 4131018 4130688.222 4130014 4132474 - gene protein_coding_gene FALSE TRUE AT3G12940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19895.1); similar to Os07g0496900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059704.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79714.1); contains domain no description (G3D.3.50.60.10); contains domain Clavaminate synthase-like (SSF51197); contains domain Diaminopimelate epimerase-like (SSF54506) -0.0465682113804373 -0.494349159276629 0.630888062741395 1 -0.487839037311068 7.66569927666847 -0.0465682113804373 0.0792320149986375
AT1G56670_at 3.18636206066953 2.73092516911671 2.23557364079578 1.92298353244268 2.2805784863696 2.38019941311095 3.66771278378038 3.62142513565537 3.12381448162849 3.0868783673977 4.3995130714418 5.4943789130085 3.786321663957 4.39355157215002 5.00714309249656 3.81584150724331 2.78599642458027 3.92679312725975 3.39988981012118 0.222933340335855 0.221831083648714 0.221099803698149 0.226664008930088 0.219074909105847 0.218241545128209 0.221792245772388 0.224302185000224 0.222339707213558 0.218241545128209 0.224349448835295 0.221010043106889 0.233991614803871 0.219652175314676 0.228265745207187 0.218241545128209 0.219948229934176 0.218416648322864 0.22391491667445 1 1 + 21246882 21247577 21247261.182 21245338 21247712 + gene protein_coding_gene FALSE TRUE AT1G56670.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G09390.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABD32376.1); similar to Os05g0159200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054715.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0495538253288579 -0.494102176305732 0.631056861249449 1 -0.487959756179177 6.45558001502576 -0.0495538253288579 0.0974656116516015
AT4G23990_at 4.05725902846851 5.05010659249945 5.45352191157354 5.8326029496536 4.09238108845069 3.27463550175014 6.81415313992989 6.87917421792756 1.52688525138399 3.35548270484095 2.36521287891225 3.45596810869275 3.76061798328083 3.14437073003076 2.32753436636363 4.23221837720500 4.20446367148111 2.65716765733487 2.29387246228092 0.276178849176237 0.276789792583301 0.280403252066761 0.280360593097163 0.273879441842605 0.275644227609706 0.29849764532202 0.293650521612903 0.2913661113206 0.273879441842605 0.274354297834633 0.274690646489867 0.277336298380693 0.277066443822019 0.278516053723036 0.273879441842605 0.302604698009333 0.279263390840525 0.276463795993755 4 4 + 12459940 12460478 12460249.909 12456501 12460763 + gene protein_coding_gene FALSE TRUE AT4G23990.1 ATCSLG3 (Cellulose synthase-like G3); transferase/ transferase, transferring glycosyl groups encodes a protein similar to cellulose synthase similar to ATCSLG2 (Cellulose synthase-like G2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G24000.1); similar to ATCSLG1 (Cellulose synthase-like G1), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G24010.1); similar to cellulose synthase-like protein CslG [Nicotiana tabacum] (GB:AAZ79231.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.0802618998443322 -0.493895859649193 0.631197883560036 1 -0.488060554341499 8.01199148436397 -0.0802618998443322 0.232330916877389
AT2G40970_at 5.79760408070216 5.90868289077582 4.76096291475633 4.99097129392638 6.16929364750626 6.27310217644194 5.70847297273406 5.93613569437374 5.90548722209385 5.45278412632876 5.94384679635751 6.08337532849487 6.49837806473301 6.17123833052355 5.69311885480666 6.59615247653809 5.80025574461294 6.4254857216776 5.96429155563405 0.191983151588399 0.192652789526009 0.203207809165345 0.203334396914134 0.194996186684373 0.197311895152077 0.186914045430423 0.188967335049036 0.199873603319994 0.188035050536431 0.191469498444767 0.18765942663036 0.188214127576977 0.197760402446404 0.199426338870594 0.197804271451474 0.212649380353276 0.191995874627733 0.194933985786033 2 2 - 17104851 17105418 17105156 17104628 17105773 - gene protein_coding_gene FALSE TRUE AT2G40970.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G10760.1); similar to NbPCL1 [Nicotiana benthamiana] (GB:BAE16280.1); similar to Os05g0412000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055539.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0440761892718804 0.493601920752498 0.63139882425004 1 -0.488204091976796 11.6559877336039 0.0440761892718804 0.0618773598762919
AT3G61620_at 5.33857198266204 5.5682040741221 5.21185133066434 5.29318599052943 5.25016192993586 5.22766113580768 4.7896853534050 5.18760968803564 4.17002416991499 4.69736989306297 4.205477631847 4.77050778528714 5.03532711588151 4.27098195549419 4.53312826575615 4.59961386766741 4.62672810955688 4.41945179593896 4.59923843679303 0.202359423311352 0.205125867638438 0.199147015710062 0.196620076657073 0.199733517567683 0.200115065687827 0.198118469472084 0.203433133760222 0.202934619515874 0.196620076657073 0.215422225586595 0.199632108844044 0.20391686921812 0.207103887602642 0.205562805330813 0.197780955088828 0.196620076657073 0.202799793797859 0.200897038935084 3 3|0 -|/ 22812357 22813147 22812783.333 22812196 22814083 - gene protein_coding_gene FALSE TRUE AT3G61620.1 RRP41 (Ribosomal RNA Processing 41); 3'-5'-exoribonuclease/ RNA binding exonuclease RRP41 (RRP41) similar to 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] (TAIR:AT4G27490.1); similar to putative exosome component 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD22331.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247) 0.0467359440915613 0.493511518077899 0.631460631028925 1 -0.488248221465798 9.75663121857142 0.0467359440915613 0.0808364038947559
AT4G25840_at 4.36738125024798 5.111826626153 4.55189097167979 5.02798405769244 5.3806405400475 4.3175821901271 4.20915403071412 4.11486394759926 5.170081848348 3.90238137853896 4.22740269247083 4.43586014641691 3.26833609196698 4.27477333354939 4.11317841237572 4.15067140421579 3.39754541354718 4.85892045778532 3.8134084200925 0.242847068428712 0.238213312306732 0.247841175952577 0.237651494076445 0.238281053096124 0.252535451841512 0.238192068404715 0.249225209782466 0.250356807075797 0.239691467082711 0.237024469710572 0.237024469710572 0.254443589608279 0.25067197768887 0.247829524758523 0.24634371171873 0.24952244778623 0.23719525106634 0.237616649916876 4 4|0 +|/ 13139668 13140699 13140229.1 13139024 13140969 + gene protein_coding_gene FALSE TRUE AT4G25840.1 GPP1 (GLYCEROL-3-PHOSPHATASE 1); hydrolase similar to GS1 (GLYCEROL-3-PHOSPHATASE 2), hydrolase [Arabidopsis thaliana] (TAIR:AT5G57440.1); similar to HAD-superfamily hydrolase subfamily IA, variant 3; Epoxide hydrolase N-terminal domain-like phosphatase [Medicago truncatula] (GB:ABE82173.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) 0.0821317106279907 0.493464438908615 0.631492819426556 1 -0.488271199811744 8.82822872329973 0.0821317106279907 0.239782035478611
AT3G49580_at 5.35589221975738 5.12702956364593 6.32922478220589 6.4687937741091 5.4009128397556 5.52766670053592 6.22778824909881 6.1933145131538 3.44024364842033 3.74959872442916 2.59785843729153 2.3574763667821 3.21146823291193 3.29356884194191 2.61780260143951 3.10086780545299 4.81525281492847 3.20440685116316 2.61958294516043 0.360653987969946 0.3543116759303 0.349744865273935 0.350868708859926 0.361687587402312 0.359917015804050 0.367207421950943 0.350875353104232 0.351210540856594 0.351089474190709 0.362467387513062 0.372281187772892 0.356413221919631 0.366118515988298 0.370756839177164 0.347009573766441 0.346510171442172 0.371686673153911 0.361516446797414 3 3 - 18386457 18386678 18386565.182 18386254 18386762 - gene protein_coding_gene FALSE TRUE AT3G49580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49570.1); similar to unknown protein [Brassica rapa subsp. pekinensis] (GB:AAQ92331.1) 0.0428363461949773 0.493084132106086 0.631752867452251 1 -0.488456742909838 9.0386509219456 0.0428363461949773 0.0516598168357669
AT1G02050_at 2.78136662338569 2.54868900198398 2.75169932927378 2.71427304079329 3.03467893900869 3.27302836214851 2.70211395182344 2.71677926360665 3.21615287773332 3.36087434979728 3.01967812902927 2.94948660055181 3.25198727326730 2.92375336775500 3.00894438613554 3.18372530232125 3.21495142808793 2.95689256227232 3.64376184160077 0.192308168884906 0.191219936713679 0.189200554115505 0.192245131360962 0.199360452639783 0.194005055039480 0.196790063410743 0.196485747130491 0.193733306117254 0.189450493850053 0.189361373910173 0.195572473695781 0.197524536398413 0.188915810441304 0.19355017735644 0.193338111801915 0.192298018554041 0.188915810441304 0.193432374133779 1 1 - 359193 359705 359506.091 359117 360518 - gene protein_coding_gene FALSE TRUE AT1G02050.1 chalcone and stilbene synthase family protein similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT4G00040.1); similar to Type III polyketide synthase [Medicago truncatula] (GB:ABE89004.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain Type III polyketide synthase; (InterPro:IPR011141); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.0435348004633859 -0.492765952201017 0.631970474068029 1 -0.488611870949774 6.050632099447 -0.0435348004633859 0.0580610960695589
AT1G69670_at 5.52220003799114 5.88431787848327 5.88090746146215 5.6450968191868 6.35249369344238 5.3581244022132 6.43179215399141 5.33870356528477 5.02842145596694 6.22880760285534 5.543008291446 5.41000885893185 5.83784114006986 5.82067521760273 5.37379268459591 5.86382284572764 5.49941527170623 5.14486045512151 6.00682529894326 0.193353538073964 0.196450777189959 0.194654372349084 0.196008439361573 0.196479249008526 0.198892735385189 0.195843409548021 0.201128374665547 0.216808235113575 0.195194137634352 0.191318923138189 0.191580220878195 0.202219425325087 0.194580732790893 0.193711191900817 0.191318923138189 0.213850856769291 0.206901482238752 0.198881852650837 1 1 - 26205920 26206332 26206145.818 26205694 26207639 - gene protein_coding_gene FALSE TRUE AT1G69670.1 ATCUL3B/CUL3B (Cullin 3B); protein binding / ubiquitin-protein ligase cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification. similar to ATCUL3/ATCUL3A/CUL3/CUL3A (Cullin 3A), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G26830.1); similar to Os02g0746000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048114.1); similar to Cullin family [Medicago truncatula] (GB:ABE90793.1); similar to H0306F03.4 [Oryza sativa (indica cultivar-group)] (GB:CAH68237.1); contains InterPro domain Cullin; (InterPro:IPR001373) -0.0890522525665713 -0.492749804498588 0.631981518625018 1 -0.48861974118837 11.4598859422929 -0.0890522525665713 0.266433880186934
AT2G32730_at 8.4918625189539 8.62965225437328 8.60219230574248 8.54682836139958 8.37880574481487 8.5086829258697 8.3842306986103 8.5025110059754 8.0281106193427 8.01563185424526 8.24403919428166 8.2136588765577 8.00677864426669 8.23422004576656 8.56436665656148 8.34052896182114 8.00151387428227 7.9201484831726 8.29951939945381 0.146833841092012 0.140166917646997 0.139639858993083 0.136937177592475 0.137450922243576 0.145916666340694 0.141398096670302 0.146325717856872 0.159977465072731 0.147938544588923 0.139655792967658 0.139982665760043 0.150948645474067 0.141723669611776 0.143892800963218 0.140235847426684 0.150426912771309 0.144952470921045 0.140687465309556 2 2|0 +|/ 13891795 13892510 13892202.8 13887123 13892813 + gene protein_coding_gene FALSE TRUE AT2G32730.1 26S proteasome regulatory subunit, putative similar to 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT1G04810.1); similar to Armadillo-like helical [Medicago truncatula] (GB:ABE85726.1); similar to B0402A04.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67136.1); similar to 26S proteasome subunit RPN2A [synthetic construct] (GB:AAP82172.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) 0.0416497163599727 0.492608716741907 0.632078022523733 1 -0.488688495579691 16.6581344601854 0.0416497163599727 0.0398061430062365
AT2G04790_at 4.19418987419373 4.62064340064419 4.83157044939378 4.97407941731926 5.44578595977929 4.79900006337317 6.25258203128629 6.19087125493197 5.56454594053217 5.44887663277945 6.21070137605257 5.95864562506519 5.60545085314612 6.36600546137797 5.19024000371756 6.68303087889805 6.16317550567741 5.79925946699947 5.7292617344678 0.271421774434747 0.282380099141751 0.258932062824554 0.246966534341093 0.244648607946726 0.266882807449008 0.249951484824768 0.248976935094138 0.271694576691661 0.250167417915060 0.251831320611519 0.249359013901196 0.244648607946726 0.244648607946726 0.255149674980929 0.246918596657059 0.244648607946726 0.26445533100786 0.249553531844922 2 2|0 +|/ 1679544 1680138 1679692.889 1679513 1680540 + gene protein_coding_gene FALSE TRUE AT2G04790.1|AT2G04790.2|AT2G04790.3|AT2G04790.4 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79920.1) 0.0571031046546601 0.492575393009312 0.632100816972787 1 -0.488704732044619 10.9525695141785 0.0571031046546601 0.136736362117960
AT1G26350_at 1.6035794381436 1.25788127338037 1.91215249714761 1.69499139840409 1.40511125093770 1.74660000207255 1.28090186685222 1.51001913528115 1.83370564526720 1.85697680132943 1.59216328425048 1.3869250401574 1.58932704764521 1.65167202297367 1.46915965585135 1.39193104184311 2.01713004612944 2.00798100581925 1.75473062903815 0.177762667570573 0.170948288327214 0.169720446759379 0.169054452742406 0.171930481615973 0.167433311670834 0.169896791219849 0.167433996746477 0.171608258681396 0.168881119938847 0.171452878157675 0.179424612386580 0.168685901427154 0.179672037912590 0.177193176248583 0.17281469362795 0.172497664685036 0.173779971553333 0.177989869595136 1 1|0 -|/ 9116002 9116636 9116220.7 9115997 9116768 - gene protein_coding_gene FALSE TRUE AT1G26350.1 unknown protein 0.0498834049658155 0.492408476754048 0.63221499879408 1 -0.488786043610711 3.27811652525841 0.0498834049658155 0.100278488761450
AT1G34510_at 1.32411698354840 1.39252770741580 1.50004337966141 1.72523214673184 1.16141506989694 1.48637586852556 1.11969909612151 1.23593983905175 1.38752198819704 1.72825522989399 1.25877159374975 1.08407411258153 1.59088579682764 1.16920865889256 1.36474402362219 1.39547548558210 1.78336446141745 1.4482418713721 1.37337060028443 0.169500123118411 0.161336682560438 0.164178060978848 0.166180459316935 0.165809539920536 0.161336682560438 0.165290770932312 0.161336682560438 0.171097596955666 0.165386907407198 0.169552306213697 0.166906164463622 0.166042439829793 0.179741058798607 0.163649324445944 0.163097393386842 0.168135433991191 0.163394636244749 0.167753926221585 1 1 - 12615912 12616466 12616208.273 12615711 12617010 - gene protein_coding_gene FALSE TRUE AT1G34510.1 peroxidase, putative Identical to Peroxidase 8 precursor (EC 1.11.1.7) (Atperox P8) (PER8) [Arabidopsis Thaliana] (GB:Q9LNL0); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G26010.1); similar to cationic peroxidase [Stylosanthes humilis] (GB:AAB67737.1); similar to Os03g0121300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048794.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.045329427025043 0.492037200126528 0.632469012646732 1 -0.488966813066505 2.80978293968456 0.045329427025043 0.072290763939125
AT1G47530_at 9.0140691718584 8.90169980140445 9.11195969404324 9.08322447406417 9.67829905498857 8.9412316323558 9.4227327790084 9.38842506505878 9.37125724542136 9.16543850222168 9.43798619171457 9.54420719526974 9.7384961753233 9.43180885565762 9.11668186922142 9.41912588752605 9.05249217231965 8.91712929070507 9.1930804669475 0.160443477223822 0.157930491983691 0.161006501960352 0.157393055700797 0.159913978284829 0.169835375835362 0.148655059550408 0.155988638161079 0.166601667328131 0.154067863332467 0.157995908617291 0.157502777361349 0.154905534466547 0.167479935288376 0.16644493837922 0.148655059550408 0.164982151192970 0.169696416264395 0.150056579843313 1 1|0 +|/ 17455606 17456202 17455974.4 17454120 17456861 + gene protein_coding_gene FALSE TRUE AT1G47530.1 ripening-responsive protein, putative similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to Os08g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062445.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE85324.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.0554646130253849 0.492012700570438 0.632485776088249 1 -0.488978736990231 18.4804550555547 0.0554646130253849 0.129258974944318
AT4G35050_at 2.82828704556827 2.95144372184093 2.76466643655761 2.76744535024795 2.68122348006343 2.51416932513057 2.49329295649821 2.8424214054764 2.39050941126985 2.08890035368305 2.25407419335264 2.47862089970082 2.53783352149154 2.41660512076728 2.57648335815116 2.02821300307401 2.50660577618712 2.32716674161298 2.67191692937174 0.177957157705158 0.183749394291795 0.191188536997388 0.181120387183089 0.183490368333642 0.180350086112797 0.180511229133696 0.183302727746635 0.190959003118032 0.179978360404963 0.179281348949261 0.183478113228661 0.18605062101965 0.190194834677360 0.178854543925234 0.195041583746409 0.18101045489311 0.192390575644155 0.179952385257386 4 4|0 -|/ 16682846 16683674 16683270.1 16682585 16684853 - gene protein_coding_gene FALSE TRUE AT4G35050.1 MSI3 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3) Encodes a WD-40 repeat protein similar to yeast MSI1. Identical to WD-40 repeat protein MSI3 (MSI3) [Arabidopsis Thaliana] (GB:O22469;GB:O49612); similar to MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) [Arabidopsis thaliana] (TAIR:AT2G16780.1); similar to putative retinoblastoma binding protein [Gossypium hirsutum] (GB:ABC79303.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0450301861643732 -0.491837962892893 0.632605343894757 1 -0.489063765330869 5.11760666095646 -0.0450301861643732 0.0702893965587139
AT3G51830_at 7.55340898092203 6.95511875213573 7.65734757566669 7.47384631135264 8.46387178981565 7.83938990873572 8.0305442636576 7.18647698760201 7.34710114457692 7.9974851033845 7.52394472815632 7.46243212686852 7.83346636190003 7.63654491972326 7.03866939227629 7.75210290472067 7.66132085679995 7.61614281851275 8.1862271853845 0.134667855251323 0.135262340568018 0.142845631286211 0.141102743077476 0.143314140453774 0.142134739031045 0.139283226440189 0.142866584215560 0.15342547002167 0.133747061651127 0.13917057478186 0.136183316871103 0.140844362227519 0.158502635153641 0.144960018608899 0.136057910414072 0.152750645302699 0.150123272947753 0.137464714749333 3 3|0 +|/ 19234171 19236028 19235157.25 19231098 19236257 + gene protein_coding_gene FALSE TRUE AT3G51830.1 ATG5 (G5p-related protein); phosphoinositide 5-phosphatase putative transmembrane protein G5p (AtG5) mRNA, complete similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G51460.1); similar to Os03g0290500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049796.1); similar to Transmembrane protein G5p, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95396.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.074600093075541 0.491745737432108 0.632668455466125 1 -0.489108631152426 15.3495918169369 0.074600093075541 0.211527108862595
AT3G42250_at 2.58766798861656 2.49593034295798 2.67410343134791 2.69686114424492 2.00944824528772 2.80567612034439 1.93894637939293 2.53937778598402 2.70776709260736 2.46983968332659 2.25937966320818 2.26457526273889 2.64945457780372 2.35003343719586 2.80339758728849 2.22647948273571 2.72982492331365 2.51822559697139 2.32447625147662 0.155281037013369 0.151530523809732 0.162671954571006 0.155752537683755 0.157314776742473 0.158102321759011 0.150756383594879 0.15468925385559 0.155698773345653 0.155911452424474 0.156654336096297 0.152816503210059 0.153065562253912 0.155366836447743 0.156075961793477 0.151388824162471 0.154236218814339 0.155449769224538 0.153324308441636 3 3 + 14414711 14414943 14414868.909 14414669 14414971 + gene protein_coding_gene FALSE TRUE AT3G42250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48720.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAP46257.1); similar to putative gag-pol polyprotein [Oryza sativa] (GB:AAL58228.1); similar to retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:ABA99612.1) 0.065259292502579 0.491729080315684 0.632679854561849 1 -0.489116733647551 4.95643425921064 0.065259292502579 0.173351234100977
AT2G45960_at 12.1230823599476 12.2009835761020 12.317091208382 12.4934923072146 12.5685394318354 12.4564830842314 12.7319077783211 13.0014360812103 12.7196498429555 12.6989711634572 12.9523810176671 12.8388316547495 13.0309184246120 12.8342198634594 12.7303921850869 12.8498093917281 12.7670221158993 12.8710527210117 12.7305735285565 0.0736593808471199 0.0714522220996014 0.0763488961601685 0.0714522220996014 0.0731353535451507 0.0781820698020015 0.0728047841185463 0.0720832186754436 0.0740956826877176 0.0724078696110232 0.0721845545882248 0.0724269404552116 0.0714522220996014 0.0737942343917589 0.0742313188145225 0.0731532624057135 0.072583093691462 0.0714522220996014 0.0718079110071548 2 2|0 +|/ 18918115 18918731 18918309 18917368 18919055 + gene protein_coding_gene FALSE TRUE AT2G45960.1|AT2G45960.2|AT2G45960.3 PIP1B (plasma membrane intrinsic protein 1;2); water channel|PIP1B (plasma membrane intrinsic protein 1;2) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. Identical to Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b) (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2) (PIP1.2) [Arabidopsis Thaliana] (GB:Q06611;GB:Q8L5V4); similar to PIP1A (plasma membrane intrinsic protein 1,1) [Arabidopsis thaliana] (TAIR:AT3G61430.2); similar to aquaporin PIP1b1 [Brassica oleracea] (GB:AAG23179.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.0437396512371211 0.491690196197221 0.632706464825146 1 -0.489135646970257 25.2744902784555 0.0437396512371211 0.060541456608311
AT3G10180_at 1.53838627162713 1.39397141047283 1.53700023278165 1.43109976092614 1.21329445754794 1.24390203245022 0.950998685197193 1.52677017349360 1.53779847258767 1.34701886155639 1.03633072723162 1.42236470466157 1.57003861845886 1.32914567897347 1.48734089282646 1.41779757838299 1.18350705444558 1.35107134611771 1.47897825210186 0.138314402282805 0.135163543241937 0.135520265565983 0.138208169281497 0.137379178391345 0.136764888471889 0.136260801599543 0.135493060437875 0.140357499699237 0.136662688508653 0.136450809251462 0.139019516665678 0.138226681338181 0.137244947702968 0.138935108766767 0.136124962295628 0.135696662686741 0.137441470617823 0.139314515424705 3 0|3 /|- 3146417 3152866 3149346.211 3143479 3154649 - gene protein_coding_gene FALSE TRUE AT3G10180.1 kinesin motor protein-related similar to ZCF125, microtubule motor [Arabidopsis thaliana] (TAIR:AT1G59540.1); similar to CENPE variant protein [Homo sapiens] (GB:BAE06078.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.0505532339412796 -0.491500208121805 0.632836490572134 1 -0.489228037094457 2.75657693000505 -0.0505532339412796 0.104482631793267
AT2G35710_at 2.1066645984242 1.94374492442570 2.00539945634928 1.97063517890183 1.89697965962656 1.91941405221319 1.72480278255194 1.90058810678716 2.55422432998519 2.19216222839768 2.43753833960397 2.44085204480747 2.51819146895509 2.4180508968094 2.30918599386512 2.37307479391933 2.14527746468746 2.32946059331422 2.20492656991067 0.137126368771657 0.136443953478281 0.137226698392939 0.139744447070871 0.138289145986092 0.140073959179377 0.142044778631607 0.135924409522517 0.139481634232766 0.137920829635359 0.139171634465082 0.138800125554156 0.134084302896604 0.138986155507711 0.136667395299357 0.139059955804814 0.135814341088911 0.139273487929333 0.138079668285309 2 2 - 15018074 15021123 15019646 15017900 15021226 - gene protein_coding_gene FALSE TRUE AT2G35710.1|AT2G35710.2|AT2G35710.3 glycogenin glucosyltransferase (glycogenin)-related similar to glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] (TAIR:AT4G16600.1); similar to OSIGBa0143N19.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67416.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE80888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495)|similar to glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] (TAIR:AT4G16600.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE80888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495)|similar to glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] (TAIR:AT4G16600.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE80888.1); contains domain no description (G3D.3.90.550.10) 0.0417532785614368 0.491475594874477 0.632853336556683 1 -0.489240003886473 4.27780775770654 0.0417532785614368 0.0420900667937738
AT1G10020_at 3.60372563827853 3.6695490638533 3.61313486917354 3.94016658455585 3.87282033011142 3.91147739625647 4.68641276630685 4.91868360111922 6.2315343484013 4.57474086765963 7.62860125856152 5.91919689274165 6.72070435048366 6.7452773660018 5.66888209728703 5.62608428400635 4.97902860031769 5.31463047997292 5.99378733390511 0.240157323358954 0.217464264940074 0.224476029244669 0.223090270748381 0.220830229917887 0.226675490744368 0.216561872473779 0.218087036909300 0.219529392254898 0.219684237417243 0.218644359308693 0.216561872473779 0.221850823033947 0.228602249216206 0.220301474035711 0.216561872473779 0.221699835643746 0.221549294650809 0.221312522799595 1 1 - 3269945 3270516 3270278.182 3269606 3271989 - gene protein_coding_gene FALSE TRUE AT1G10020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29310.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93135.1); contains InterPro domain Protein of unknown function DUF1005; (InterPro:IPR010410) 0.0450434219088707 0.491416979277434 0.632893455562573 1 -0.489268500087242 9.86465703928702 0.0450434219088707 0.0706619671026292
AT4G29900_at 9.01673435040454 8.86116378273054 9.18498614874595 9.17787169150394 9.31684531255338 8.67654849542103 9.06636613329658 8.71366240000996 8.84606410546398 8.52909899634487 8.29639273412752 8.29036898552227 8.40911549017386 8.3000868065291 7.85367306097267 8.25532943428105 8.32827696995925 8.28112244239173 8.23641281648346 0.137496990167632 0.137406269152994 0.144235576218616 0.141110059370059 0.137629890361569 0.142667271153142 0.144195958093078 0.136757832796896 0.139667518299838 0.144786959512708 0.140058745145394 0.137793829874206 0.137403439161624 0.136702033316413 0.141585342346256 0.137226915664402 0.140823139089962 0.138938664881959 0.141647233585396 4 0|4 /|- 14611534 14612333 14611959.833 14610889 14618781 - gene protein_coding_gene FALSE TRUE AT4G29900.1 ACA10 (autoinhibited Ca2+ -ATPase 10); calcium-transporting ATPase/ calmodulin binding one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. Identical to Putative calcium-transporting ATPase 10, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10) (ACA10) [Arabidopsis Thaliana] (GB:Q9SZR1;GB:Q9M0D3); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) [Arabidopsis thaliana] (TAIR:AT3G63380.1); similar to ACA9 (autoinhibited Ca2+ -ATPase 9), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G21180.1); similar to ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G57110.2); similar to putative plasma membrane calcium-transporting ATPase [Physcomitrella patens] (GB:CAD21958.1); similar to putative calcium-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD27978.1); similar to putative calcium-transporting ATPase 8, plasma membrane-type [Oryza sativa (japonica cultivar-group)] (GB:BAD09972.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014) -0.055407493411874 -0.491349651933085 0.632939538781859 1 -0.489301227539411 17.3962661459626 -0.055407493411874 0.129344065113196
AT2G48090_at 1.50137687710141 1.33626756244179 1.31998329376520 1.37029967787298 1.13484362052393 1.41736981885123 1.58808903526394 1.28365242958082 1.71374834945582 1.35837547358803 1.74724748729986 1.66847767772316 1.46066221496922 1.60049682254568 1.57733415216365 1.51988302261540 1.4522376572117 1.95108806386477 1.16782025919750 0.200820059129900 0.190608018172680 0.190608018172680 0.196795634970531 0.194404734790117 0.197394249228197 0.197378681497766 0.19612184102274 0.204722326892157 0.198219583077806 0.192868755758688 0.193293905362567 0.196743431142002 0.193910010919112 0.193544339244716 0.196234797532027 0.193691608693083 0.200113610711787 0.200011896460624 2 2 - 19676290 19676704 19676510.636 19676180 19676834 - gene protein_coding_gene FALSE TRUE AT2G48090.1 unknown protein 0.0460706599375375 0.491304985879521 0.632970112036434 1 -0.489322937103756 2.88673183011498 0.0460706599375375 0.0778352715183910
AT3G09940_at 3.46090374234256 4.66593773829327 3.82449155821346 3.59640757754624 1.9917949791766 2.33639093149840 1.03749993837830 0.655472141988394 2.21013767003347 1.36301652922876 0.660932482441194 1.09118637843075 1.38525894392402 1.37134818339996 0.914546848510768 1.38117627601078 0.86642181407444 1.16624147349563 1.66331847225281 0.269660652940574 0.295434985614923 0.263787866222772 0.276023424717831 0.25431430144412 0.250831086510253 0.252234760061233 0.259212358692932 0.256753218057157 0.253480467522902 0.263502201033610 0.250831086510253 0.250974460905257 0.256463259670177 0.259309149285996 0.257073656950964 0.267027282394614 0.26173422643815 0.255947442676419 3 3 - 3056517 3057208 3056792.182 3056380 3059153 - gene protein_coding_gene FALSE TRUE AT3G09940.1 MDHAR (MONODEHYDROASCORBATE REDUCTASE); monodehydroascorbate reductase (NADH) Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 1 (EC 1.6.5.4) (MDAR 1) [Arabidopsis Thaliana] (GB:Q9SR59); similar to monodehydroascorbate reductase, putative [Arabidopsis thaliana] (TAIR:AT5G03630.1); similar to monodehydroascorbate reductase [Mesembryanthemum crystallinum] (GB:CAC82727.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.079266984555514 -0.491222225312711 0.633026762317388 1 -0.489363157216744 4.12117729620013 -0.079266984555514 0.230157552886435
AT2G17440_at 5.42235276278137 5.27523902573278 5.35068523393833 5.557277070893 6.4073790336355 5.22054578426001 5.62713172092473 4.75517347558113 5.50005625964707 4.5418621356173 4.61410825936701 4.53458320005642 4.36182717501336 4.16310823825437 4.09765374799027 4.58569921431035 4.43152459966861 4.18126788208812 4.68349517847025 0.236253454907141 0.228014613875075 0.229079074862777 0.232101714030692 0.233705870652464 0.238526405834414 0.229137559564104 0.234282825149915 0.262692458862606 0.229686459060579 0.236965099320621 0.232467459949238 0.231752967930551 0.233187635500405 0.235332946416829 0.230422855020159 0.228842935570066 0.234507733946370 0.228014613875075 2 2|0 +|/ 7579799 7580171 7579984.5 7578222 7580881 + gene protein_coding_gene FALSE TRUE AT2G17440.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G35470.1); similar to PSR9 [Brassica nigra] (GB:AAM10777.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) -0.0866260586123014 -0.490803174436244 0.633313643809885 1 -0.489566709064994 10.0918193788876 -0.0866260586123014 0.258611478093032
AT4G16750_at 1.92935791616422 1.51826992959131 1.17119603500300 0.99047655960468 1.57519448323240 1.28631623734393 0.867451936166427 1.12426945753102 0.758566300984279 1.01884509302821 0.98167753616324 1.38219897667063 1.23130212141510 1.1382056483896 1.78623423016666 0.892293904489579 1.39750875628585 1.57518838344618 1.50401824008508 0.255344696632143 0.245073874401561 0.237170691360472 0.239552692049884 0.237623901253996 0.237170691360472 0.238332354992505 0.239003929816594 0.242168447287315 0.240746101338156 0.239282291003209 0.247810624855616 0.242978688221214 0.240626985547803 0.239483700321589 0.243743090033810 0.247070259637107 0.254350042824996 0.250129699641512 4 4 - 9421163 9421648 9421340 9420939 9421781 - gene protein_coding_gene FALSE TRUE AT4G16750.1 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G35700.1); similar to transcription factor DREBIII-3 [Brassica napus] (GB:ABA54281.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0501124177642964 0.490663273204791 0.633409433984177 1 -0.489634628502102 2.50375960566006 0.0501124177642964 0.102535252192323
AT1G63100_at 2.76266133000196 2.62894102499878 2.57108755229234 2.46715979193459 1.94165873057627 2.53447353387735 2.16133857710049 2.29321546331981 2.58757918299605 2.91674526668454 3.29502792541203 2.96226430672475 2.47133368739927 2.61685551263703 3.1915423273103 2.68415087284611 2.7688259530896 2.84876402413391 2.50343549229669 0.189647401268744 0.178292197334178 0.187453923351474 0.183233222452792 0.183627597939308 0.188214406373816 0.188954862447277 0.178688645092375 0.183779291214832 0.184690509824957 0.178984102751865 0.179013800486177 0.180823978700187 0.181782386022535 0.189486970276175 0.184656851932313 0.194930165424506 0.180765168356379 0.191283593479047 1 1 - 23403065 23403578 23403320.636 23403056 23405032 - gene protein_coding_gene FALSE TRUE AT1G63100.1 scarecrow transcription factor family protein similar to SCR (SCARECROW), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54220.1); similar to Os06g0127800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056667.1); similar to GRAS family transcription factor containing protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93922.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.051324032758291 0.490644989179631 0.633421953549262 1 -0.489643503690978 5.18211644560597 0.051324032758291 0.109107226263052
AT4G25130_at 10.5814649960611 10.6310864500188 10.5402214664171 10.6640152707702 10.3368319414901 10.3891288879240 10.3885302258912 10.7397710015809 10.7295702779911 10.7004454413472 10.7146882351474 10.6744035135818 10.7417264938356 10.7580629556076 10.9997506394360 11.1189958113458 10.7275269994761 11.0419155478429 10.5378671007614 0.0906048411201303 0.08956502045397 0.0942102442117499 0.085432005013897 0.0898496211346147 0.0899631039123036 0.0912848993133141 0.0929515393026503 0.0914254605607677 0.0861402695018761 0.085432005013897 0.0891671795085713 0.0929315954425111 0.0913879955727342 0.0904027460768879 0.0875230280396554 0.0957470279220115 0.08900588930846 0.0872577255306518 4 4 - 12898812 12899750 12899366.545 12898601 12900074 - gene protein_coding_gene FALSE TRUE AT4G25130.1 peptide methionine sulfoxide reductase, putative Identical to Peptide methionine sulfoxide reductase (EC 1.8.4.11) (Protein- methionine-S-oxide reductase) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (PMSR) [Arabidopsis Thaliana] (GB:P54150;GB:Q9SW13); similar to PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1), protein-methionine-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT5G61640.1); similar to PMSR protein [Brassica napus] (GB:CAA62760.1); contains InterPro domain Methionine sulfoxide reductase A; (InterPro:IPR002569) 0.0442545288816500 0.490199641557046 0.633726932120286 1 -0.489859581034061 21.2854286373029 0.0442545288816500 0.0656450534783006
AT3G21400_at 4.60192153713591 4.56216048512989 4.08439543335935 3.81344220962378 3.86126759547538 4.34381276878529 4.34461994496224 4.04085562998787 4.04378658413561 4.13543765322168 4.3537938523262 4.5639057332575 3.65250678724474 4.18180172441947 4.72181603198647 4.19095432607617 4.38992615581104 4.40321198968086 3.96542981996835 0.245383735340650 0.24306699550109 0.258169288724676 0.243355013634546 0.250185274754839 0.243110181566046 0.244737987699024 0.23872068445016 0.249807350551251 0.239152018024442 0.238046424197236 0.237432585151662 0.24363730185247 0.245594547353259 0.238233157343756 0.242094980864421 0.237432585151662 0.258868043501306 0.240855395567929 3 3 - 7534871 7536268 7535513.091 7534639 7536515 - gene protein_coding_gene FALSE TRUE AT3G21400.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99446.2); contains domain "Winged helix" DNA-binding domain (SSF46785) -0.0513191707506307 -0.489954110096968 0.6338951049793 1 -0.489978629946459 8.38428824766189 -0.0513191707506307 0.109465685399668
AT1G63110_at 6.84484528105831 6.67867742700931 6.35971974210798 6.32216864450587 7.27768378949804 6.49447702172384 6.87310953226748 6.81719334535990 5.97842807389276 5.9851272960421 6.57226695094717 6.15562542794938 6.48810621310149 6.3729435022884 6.17764694982344 6.0294202922492 5.49324413147489 5.9866131022183 6.28879874080796 0.220300717447184 0.223397780052612 0.222493229073719 0.231039762867519 0.226192845458824 0.232736536527305 0.219604083615092 0.225410374080202 0.234259541153376 0.218861990325898 0.220211743632229 0.219578288059996 0.218138019178318 0.228771119878806 0.221774121640829 0.229900670059633 0.241410044557171 0.226952763105938 0.219549470876003 1 1|0 +|/ 23409993 23411109 23410489 23408486 23411717 + gene protein_coding_gene FALSE TRUE AT1G63110.1|AT1G63110.2|AT1G63110.3 cell division cycle protein-related similar to cell division cycle protein-related [Arabidopsis thaliana] (TAIR:AT1G12730.1); similar to putative transamidase complex subunit PIG-U [Oryza sativa (japonica cultivar-group)] (GB:BAD81713.1); similar to Os02g0688900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047781.1); contains InterPro domain GPI transamidase subunit PIG-U; (InterPro:IPR009600)|similar to cell division cycle protein-related [Arabidopsis thaliana] (TAIR:AT1G12730.2); similar to putative transamidase complex subunit PIG-U [Oryza sativa (japonica cultivar-group)] (GB:BAD81713.1); similar to Os02g0688900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047781.1); contains InterPro domain GPI transamidase subunit PIG-U; (InterPro:IPR009600) -0.0572894063112767 -0.489936609928853 0.633907092265729 1 -0.489987112944183 12.8302850270267 -0.0572894063112767 0.139043935741245
AT1G48840_at 5.29645716298867 5.39298641919508 4.6843711947893 5.42950461209223 6.68126559217459 6.08247984850518 4.93295652424304 5.96131917423127 6.07140896198731 5.58362714657412 5.12537582997194 5.25995945347563 5.28329163099008 5.39194487469081 5.00475138896085 4.76619803059491 5.24432647685326 5.28780633826349 5.32165918679157 0.241413070533941 0.228251147468757 0.234436229847523 0.229095623997908 0.234215980756399 0.231197181837653 0.228784296243304 0.229419193777966 0.227068730062415 0.232344450447118 0.222710401484768 0.222389964915289 0.226107766021388 0.227739427006344 0.225871569099767 0.224914962986393 0.226177245906643 0.222389964915289 0.226848577602482 1 0|1 /|+ 18067912 18068428 18068133.222 18065189 18068699 + gene protein_coding_gene FALSE TRUE AT1G48840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18350.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01350.1); similar to Os10g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064086.1); similar to Os05g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055043.1); contains InterPro domain Protein of unknown function DUF639; (InterPro:IPR006927) -0.0824830935417029 -0.489697732164479 0.634070730024798 1 -0.490102877198551 10.9723451584071 -0.0824830935417029 0.243547361583556
AT2G42210_at 9.8223701641786 9.79501896835368 9.65714020784489 9.5979501444702 9.45193956931363 9.38612084433066 9.89507351631956 10.0336378416481 9.36787247317235 9.6900814189313 10.0080964806691 10.0408828524452 9.74429148940655 9.85994249597807 10.0625471164119 9.6549174830728 9.68116134484868 9.70272466900414 9.6284501185058 0.108721179286955 0.106574335267389 0.105519658523564 0.105519658523564 0.110184089527054 0.118172491187379 0.111175022158444 0.116418222320978 0.118967224245570 0.111105974488675 0.114511744894915 0.108907124274200 0.111144926346566 0.116528369740656 0.111517066183372 0.109756613825202 0.123054498088066 0.120371247269705 0.111131610614438 2 2 + 17597787 17598624 17598141.818 17597269 17598930 + gene protein_coding_gene FALSE TRUE AT2G42210.1|AT2G42210.2|AT2G42210.3|AT2G42210.4 ATOEP16-3; protein translocase Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. similar to Os09g0279300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062758.1); similar to Os02g0717300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047931.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26504.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) -0.0405258049293653 -0.488867354697571 0.634639720219937 1 -0.490504873419885 19.4081339878988 -0.0405258049293653 0.0288455331141715
AT1G56360_at 0.823089010657377 0.934802806510584 1.30058530896362 1.24686815843433 0.895975907449842 0.731601002225578 1.00154382234649 1.17524618297138 1.00694664906995 1.24439225061919 0.914726192852022 0.888046549043192 0.641771096728634 1.12320591905720 1.07070334335075 0.96012857976955 1.05371794863957 1.33614408861413 0.672936810384321 0.207192172568770 0.204299185675275 0.205993871758611 0.205842926957675 0.202446746659198 0.202589808973844 0.204412603327349 0.211036966610561 0.205721695676459 0.202446746659198 0.204803177800666 0.202446746659198 0.214312790241969 0.207414833147866 0.202446746659198 0.210474724812865 0.204766243691976 0.209086448537176 0.208124748464989 1 0|1 /|- 21102299 21102870 21102508.1 21102268 21104507 - gene protein_coding_gene FALSE TRUE AT1G56360.1 ATPAP6/PAP6 (purple acid phosphatase 6); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP25/PAP25 (purple acid phosphatase 25), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G36350.1); similar to purple acid phosphatase [Medicago truncatula] (GB:AAX20028.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0419420166896413 0.488726978716564 0.634735932870998 1 -0.490572766903924 2.00037104233558 0.0419420166896413 0.0466147476995961
AT2G27950_at 4.59177087815972 4.85785160093622 4.60511952669525 4.20805697797425 4.19179966420517 4.71517735858807 4.50055555740201 4.59666112908504 3.55138796237859 3.58216771126402 3.70558247761649 3.87631505628273 3.95551254620291 4.26547057994601 3.76056374986804 3.9911301633142 4.10050960206235 3.41037557865277 4.21973962461157 0.205087761301097 0.196303011764508 0.205222544438017 0.194827010000425 0.198201037608277 0.193590946154115 0.197952526286642 0.202244860769916 0.205648101713681 0.199699878487717 0.193449424124701 0.196176839567468 0.194934810627322 0.196015868763912 0.204733277242727 0.193449424124701 0.199698739635454 0.204200677542582 0.193449424124701 2 2 - 11907145 11907708 11907407.909 11906340 11910248 - gene protein_coding_gene FALSE TRUE AT2G27950.1 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04460.1); similar to Os09g0570500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063987.1); similar to cell wall-anchored protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (GB:YP_300225.1); similar to Os02g0823300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048568.1); contains domain NEURALIZED (PTHR12429) -0.0539603531857968 -0.488562882503208 0.634848412133515 1 -0.490652109208247 8.36718120429467 -0.0539603531857968 0.123781648635391
AT1G30950_at 2.10788970091184 1.50574623663899 1.71176244522928 1.54011825739593 1.47100758238434 1.53346180835547 1.93028152616716 1.70219017319392 1.49166048142748 1.89480957587547 2.11163566890202 1.73702692261112 2.29276076525792 2.03458836241875 1.86585185438889 1.43091432561381 1.96232415795034 2.60345146768262 1.57167657482835 0.200243772953785 0.181795867788613 0.191443064348317 0.192965757962746 0.188998839701298 0.186503625377995 0.18367731832056 0.187937846465038 0.179880721558768 0.184208222854701 0.184342088733456 0.192160164092602 0.187386641614748 0.179612936674023 0.189243772838405 0.181837355788778 0.183837236779015 0.181058149013120 0.177966125213835 1 1 + 11036892 11037453 11037233.545 11036161 11037489 + gene protein_coding_gene FALSE TRUE AT1G30950.1 UFO (UNUSUAL FLORAL ORGANS); ubiquitin-protein ligase Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. Identical to Protein UNUSUAL FLORAL ORGANS (F-box only protein 1) (AtFBX1) (UFO) [Arabidopsis Thaliana] (GB:Q39090;GB:Q4PT17;GB:Q9FYI4); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G15710.1); similar to Stp-h2 [Pisum sativum] (GB:AAP32285.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.0523321303363484 0.488046460192802 0.635202455139588 1 -0.490901639151366 3.51657458360809 0.0523321303363484 0.115825768891595
AT1G54260_at 5.3729441540159 5.46046348516643 5.74272259733318 5.34363962074194 5.77970949157477 5.52768600732074 5.84021264146819 5.10891499330072 4.90794343101047 5.09656076471244 5.32447139330669 5.31088476495709 5.22597421855024 5.2393142027382 4.81574120844851 5.34844964015144 5.07421306849557 4.56490870795578 5.43439178476551 0.223166337274966 0.233574135423561 0.227473009473170 0.232501740437952 0.22408686103962 0.235095415500923 0.224086242962716 0.225371224895838 0.233019911205792 0.223962774286073 0.222466041314685 0.232687239762634 0.232416852064411 0.229004094070189 0.228493519830867 0.223348035475725 0.241158121211533 0.240964344355409 0.234782695195904 1 1|0 +|/ 20261103 20262818 20262224.889 20261007 20262843 + gene protein_coding_gene FALSE TRUE AT1G54260.1 histone H1/H5 family protein similar to DNA-binding family protein / histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G72740.2); similar to Linker histone, N-terminal; Homeodomain-related [Medicago truncatula] (GB:ABE81296.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0597508005837436 0.488014475882660 0.635224385720237 1 -0.49091708536183 10.6516832792344 0.0597508005837436 0.151384649406432
AT1G47280_at 2.1552673321907 1.94387419555472 2.01529135475821 2.01944082456184 1.49549870577218 2.06028054825505 1.84020497774004 1.92619728472706 1.96735297068867 1.86156675432364 2.34496437094636 1.69091849285519 1.46082572729067 2.41784010876436 2.31626457689376 2.20501691123505 2.28370650152980 2.01322138138482 1.93741340761970 0.189797218794235 0.187757015695424 0.194810426474242 0.193306244205084 0.190056318733055 0.188023678083065 0.19074005992423 0.185016865931443 0.190734728332777 0.192388483321136 0.195448600227036 0.190052266563395 0.187118651056647 0.190461043715673 0.187078667439390 0.187002493428633 0.193894083567168 0.191685700173798 0.185016865931443 1 1|0 -|/ 17334685 17336710 17336407.222 17334496 17336846 - gene protein_coding_gene FALSE TRUE AT1G47280.1 unknown protein 0.0503628127177606 0.487986718751883 0.635243418160646 1 -0.4909304893542 3.93885980448156 0.0503628127177606 0.105418203034602
AT1G13040_at 0.86477377838606 0.90839411500024 1.2535900941013 0.961757363101098 0.774265167929663 1.04942487441952 0.426800175887616 0.57711390156863 1.52174634121851 0.499208688239161 0.820467422126919 -0.179849378256265 0.813527179451102 0.69618448608197 1.09561977638902 0.669747007948764 0.890422078070912 0.954878060115392 0.81435775562272 0.216035865877086 0.211560892416275 0.214566474724299 0.217395117131389 0.212841449418201 0.214597874328099 0.21600061854136 0.217396940805086 0.231678648572757 0.216253992050313 0.213382568169156 0.220899725866025 0.224911544386904 0.214485302613531 0.2181884901862 0.216569256881762 0.217675566264999 0.214002854310421 0.216101960249544 1 1 + 4448612 4449148 4448832.909 4447645 4449198 + gene protein_coding_gene FALSE TRUE AT1G13040.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to Os07g0688100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060699.1); similar to hypothetical protein MtrDRAFT_AC139526g28v1 [Medicago truncatula] (GB:ABE80159.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0452545997373872 0.487796573401417 0.635373803957953 1 -0.49102229149277 1.68462935414149 0.0452545997373872 0.0745092591388647
AT1G05920_at 1.65797014343882 2.25599054342413 1.59739809773005 1.57493378572431 1.26549186313987 1.86282618969792 1.21789184729441 1.7925336914259 2.29163110479035 2.14424804998191 2.02771585374395 1.63954152568584 1.82919474794963 2.40891360812288 1.85021541105817 2.04874864793583 1.76747061900916 2.03906484550332 1.34380101261522 0.258341278086158 0.256880521168299 0.270339666884822 0.269107253685516 0.264159033718729 0.256880521168299 0.262403873245989 0.256880521168299 0.263573558994873 0.259481419505255 0.258335228525710 0.261952059079982 0.257073614565103 0.256880521168299 0.272887610451585 0.262827818849128 0.256880521168299 0.256880521168299 0.260824574494390 1 1 + 1797415 1797950 1797672.818 1796777 1798253 + gene protein_coding_gene FALSE TRUE AT1G05920.1 DNA binding similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G24850.1); similar to Protein of unknown function DUF313 [Medicago truncatula] (GB:ABE88646.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Protein of unknown function DUF313; (InterPro:IPR005508) -0.0655679853712557 -0.487735941560186 0.635415382927272 1 -0.491051557356647 3.59208862682039 -0.0655679853712557 0.176918632681178
AT3G51530_at 2.92652691555483 3.36524311109833 3.34293817037743 3.32876406179985 3.35806692953833 3.97501987416641 3.0845632878841 3.04679690817388 3.10645235318742 3.62485786924711 3.51751401955721 3.15532114519107 3.1045808930631 2.60018487275012 3.00361971247579 3.0576332602422 2.84138672079161 3.36697630435038 3.36535868798949 0.208387240401371 0.206163365082792 0.210623663133288 0.210045960061768 0.208958101777335 0.210868312974062 0.210424209750969 0.211087720255385 0.217839795774117 0.203043103043249 0.210447012587630 0.205505357645471 0.209368072962551 0.225825584624980 0.215117649121140 0.205940416632911 0.2053737588669 0.208863060488545 0.20501414439971 3 3|0 -|/ 19123853 19124508 19124081.778 19123673 19125622 - gene protein_coding_gene FALSE TRUE AT3G51530.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0553802579353654 0.487721355877694 0.635425385419687 1 -0.491058597076854 6.52671911708782 0.0553802579353654 0.131194387726522
AT3G03110_at 4.03497598129833 4.06523331575457 4.00112899569911 4.58134392466414 3.79817773492414 3.60124222756243 4.73840984996479 3.69087514819534 3.65424020582098 4.05963348225347 3.72733456487066 3.92104683431825 3.68810094611328 3.73984549826362 4.32128880494959 4.03508162235845 4.14560581112442 4.09878127892665 4.19580313705141 0.215522729206929 0.226408405739985 0.216877577888326 0.221505419806176 0.220481770368386 0.214237522405253 0.218490822871086 0.222428156310279 0.217094014177929 0.214237522405253 0.221595159372520 0.221519677320285 0.216597412609122 0.219418972874654 0.220142239105432 0.214237522405253 0.230880825663195 0.219490055075215 0.215840914592460 3 3|0 +|/ 715988 716832 716430 708943 717100 + gene protein_coding_gene FALSE TRUE AT3G03110.1 XPO1B (exportin 1B); protein transporter similar to XPO1A (exportin 1A), protein transporter [Arabidopsis thaliana] (TAIR:AT5G17020.1); similar to retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] (GB:ABG00000.1); similar to Importin-beta, N-terminal [Medicago truncatula] (GB:ABE90433.1); similar to Importin-beta, N-terminal [Medicago truncatula] (GB:ABE91894.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Exportin 1-like; (InterPro:IPR013598); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) -0.07357847900857 -0.487392374075669 0.635651013019468 1 -0.491217325445989 8.02868736983664 -0.07357847900857 0.210079909640450
AT2G27285_at 8.33097986307483 8.38547066100854 8.64277582821952 8.72804993430503 8.86010329152165 8.56813874137674 8.41364113796373 8.24348013961701 8.5318525076695 8.57359751864193 8.17047585501661 8.3008411343943 8.12880983109658 8.45083075199532 8.09708275901015 8.60620908723361 8.38307476925835 8.16218212768823 8.56568862639424 0.12564901778795 0.118670583153570 0.122116575294586 0.126671517966874 0.119491392684741 0.121465448495671 0.125022152918085 0.120495990018838 0.122146132786486 0.124698285123770 0.119735649631172 0.11892214692797 0.119448475974329 0.120584341781636 0.122796098710919 0.118891725838343 0.123304933023861 0.121904487221553 0.118670583153570 2 2 - 11683157 11684030 11683365.455 11683038 11685196 - gene protein_coding_gene FALSE TRUE AT2G27285.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27280.1); similar to PREDICTED: similar to CG15747-PA [Tribolium castaneum] (GB:XP_972927.1); similar to Os04g0440000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052872.1) 0.0433830351663973 0.486987131852319 0.635928995912078 1 -0.4914127077593 16.943822203151 0.0433830351663973 0.0610466078234016
AT1G34540_at 0.969485174585098 1.06861490802333 1.03509599441338 1.02558745536681 1.16080029277015 0.977573413940472 1.09434381439451 1.03228599274845 1.05376772605189 0.93775975890665 1.24183307488161 0.827678197039882 0.605674970793397 1.21043087844609 1.36727296019576 1.05506487208499 1.33318671066287 1.19254376164369 1.10095337079819 0.199393060834434 0.196650976237713 0.201219754566728 0.209013069500463 0.194683395910869 0.199745078523165 0.202037403088401 0.201284559633876 0.201373901254413 0.203596321639182 0.199632386897769 0.197055871574845 0.195507548842096 0.194300972957119 0.208795304765104 0.201316095880404 0.198400787269486 0.202002603563745 0.194300972957119 1 1 + 12638012 12638493 12638211.636 12637032 12638528 + gene protein_coding_gene FALSE TRUE AT1G34540.1 CYP94D1 (cytochrome P450, family 94, subfamily D, polypeptide 1); oxygen binding member of CYP94D similar to CYP94D2 (cytochrome P450, family 94, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G56630.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE79844.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0409827714922414 0.486812590516560 0.636048743618073 1 -0.491496812834834 2.11299219584900 0.0409827714922414 0.0376529642506233
AT2G42240_at 4.42844244472777 4.63475626829973 3.98136682419613 4.17653489379212 4.5349171737509 4.00745838858183 3.83532607272817 3.89649491200979 3.45715684800934 3.48772105516579 3.07742088715630 3.46936313053131 3.17666771218335 3.04581770544249 3.93506179597746 3.13298976742428 3.21785319114505 3.2309639998444 2.54125290920281 0.275398189917570 0.263151453638933 0.260481136334984 0.268109933388932 0.260481136334984 0.273835841697115 0.260481136334984 0.265824012378973 0.266898416681942 0.26387461735396 0.265963767407995 0.260481136334984 0.273113146663653 0.265921625334075 0.274383522753988 0.260481136334984 0.265339077069262 0.266027090595538 0.272743172453606 2 2 + 17604029 17604574 17604189.444 17603895 17606257 + gene protein_coding_gene FALSE TRUE AT2G42240.1|AT2G42240.2 nucleic acid binding| similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G21215.1); similar to proline rich protein 3 [Cicer arietinum] (GB:CAD33925.1); similar to RNA-binding re (GB:ABE86336.1); similar to Os06g0151200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056827.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G21215.1); similar to Os08g0249400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061371.1); similar to RNA-binding re (GB:ABE86336.1); similar to Os06g0151200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056827.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0500190326129897 0.486790450168605 0.6360639342405 1 -0.491507479401303 7.41081756118033 0.0500190326129897 0.104208565039369
AT3G50950_at 10.312994387447 10.3883645605541 10.2841205875313 10.3832635298449 10.0310535908776 9.77669310719908 9.5471322779297 9.45964856165823 10.1594423659620 9.37732977244703 9.42701282684294 9.44870966962695 9.27233518179586 9.57136745646173 9.08758512951663 9.4019945726472 9.2728826642967 9.87793724718997 9.55184660202864 0.080302269783236 0.07654474783493 0.0840650382891772 0.0788232433498712 0.0799740721635964 0.0801884758528332 0.0773565781383172 0.0767208343137322 0.0772961774921502 0.0757868997774572 0.078953672149533 0.0765274802287883 0.0785521071793514 0.0790876809389748 0.0809251924333992 0.0779402546973444 0.0757041194531785 0.0787338565280278 0.0736970442371949 3 3 + 18949101 18949581 18949376.909 18946656 18949780 + gene protein_coding_gene FALSE TRUE AT3G50950.1|AT3G50950.2 disease resistance protein (CC-NBS-LRR class), putative Identical to Putative disease resistance RPP13-like protein 4 (RPP13L4) [Arabidopsis Thaliana] (GB:Q38834;GB:Q9SVK4); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to myosin heavy chain homolog (GB:AAA63149.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.0422401981496603 -0.486665820314504 0.636149446777621 1 -0.49156751375103 19.5810009955601 -0.0422401981496603 0.0512962287985616
AT3G28490_at 1.13296510033122 0.97582050957779 0.87925342503977 1.15080401700696 0.635246469233395 0.91408350672132 0.729708517246224 1.29331895974965 1.21660111308633 1.15179578649890 1.03520156203428 0.824943481701332 0.958019490729866 1.16130262096583 1.31071449453104 0.964682238522779 1.08480078527705 1.52168378608667 0.860171841494397 0.206969708324114 0.206176246515204 0.208118966820455 0.212905499776991 0.201767240896887 0.210727705681291 0.201767240896887 0.201767240896887 0.204609908256721 0.211001695759983 0.203859011873816 0.210479605680819 0.209708458375309 0.206092070963173 0.217137369175011 0.201848552403704 0.204040713551507 0.206580837658112 0.209607492064599 3 3|0 -|/ 10680997 10681820 10681358.778 10680286 10681891 - gene protein_coding_gene FALSE TRUE AT3G28490.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G28480.1); similar to Metridin-like ShK toxin; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE78638.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain Metridin-like ShK toxin; (InterPro:IPR003582); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.0533137200523141 -0.486627647324115 0.636175639598617 1 -0.491585898791607 2.05582913203378 -0.0533137200523141 0.121612122090472
AT4G28940_at 3.52581601579814 3.74199013421836 3.93390909640304 3.66685862988720 3.29203345368232 4.07371742048549 3.50192863478079 4.04129333869063 4.62430767308421 4.23697561957465 4.3635960834827 4.10863524503863 4.2667300413986 4.33867426693 4.91637387165254 4.33232143295509 4.32249685531230 4.8012083920744 4.15963759816634 0.247768133774180 0.245647408106886 0.243868764399236 0.238605402711263 0.251588983054010 0.237567476363112 0.26467043297546 0.240151072321644 0.244394330025144 0.246165296234628 0.242871586666746 0.239709933788919 0.245044532201917 0.240496315019667 0.237567476363112 0.237567476363112 0.242462024597948 0.241112018876849 0.237567476363112 4 4 + 14276641 14276893 14276777.364 14274347 14277101 + gene protein_coding_gene FALSE TRUE AT4G28940.1 catalytic similar to phosphorylase family protein [Arabidopsis thaliana] (TAIR:AT4G24340.1); similar to Os05g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054970.1); similar to Os01g0229800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042490.1); similar to putative bark storage protein [Oryza sativa (japonica cultivar-group)] (GB:BAA94780.1); contains InterPro domain Purine and other phosphorylases, family 1; (InterPro:IPR000845) 0.0649100896198345 0.486585870006004 0.636204306165006 1 -0.491606018186865 8.10797408410021 0.0649100896198345 0.174775898568193
AT4G39070_at 1.07349915767246 1.45852089905992 1.5323606333798 1.55977888510177 1.15848939694763 1.85088438550975 1.12658105697059 1.28656191204809 1.92566281770406 1.65172444183178 1.39204985964420 1.18571694581069 0.883099760795945 1.50146237253397 1.60296098210185 1.43256866063054 1.19720667983459 1.59187612797767 1.67741662569002 0.22008220212588 0.214551796482255 0.2181059035833 0.227343096136899 0.222350774284100 0.222542494326648 0.217906646752482 0.222304903247912 0.214116910414587 0.213233854664484 0.21267427010741 0.218480892668418 0.224764428060853 0.216965315799461 0.222870752535017 0.211357485721269 0.223639821952236 0.226311356632382 0.211357485721269 4 4 - 18205157 18206254 18205496.273 18204849 18206768 - gene protein_coding_gene FALSE TRUE AT4G39070.1 zinc finger (B-box type) family protein similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G75540.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE89528.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.0570730263060673 -0.486436732697125 0.636306645591288 1 -0.491677827266534 2.93081902520698 -0.0570730263060673 0.139949574759374
AT1G43680_at 0.561326757216323 0.390818594284438 1.02964316125114 0.738075178403362 0.390391194413269 0.358452256448430 0.794309383019163 0.705252416235757 0.672356393901394 0.94119748698759 0.84177427415452 0.171550880679663 0.315333201650686 0.534970039875782 0.499763343106156 0.510376662392299 0.898546907787957 0.779178193586438 0.401647576393061 0.232359698020503 0.231691628915996 0.230770107987328 0.230770107987328 0.230770107987328 0.241465936715767 0.232563176397833 0.236518886146668 0.233143824527690 0.240918434286165 0.23478727753654 0.236726602677322 0.236110619440798 0.233206027175018 0.231291562355063 0.230770107987328 0.234928855848128 0.239151782102986 0.230770107987328 1 1 + 16474803 16475629 16475325.455 16474645 16475706 + gene protein_coding_gene FALSE TRUE AT1G43680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G36228.1); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.0432917356248489 -0.486435809103486 0.636307279394666 1 -0.491678271908114 1.24136887115809 -0.0432917356248489 0.0607015379276032
AT1G68460_at 0.479014221773712 0.405202828790374 0.467994310264590 0.314047615656087 1.02410961987296 0.81454595708318 0.811550399025558 0.354566063865361 0.956837269123986 0.882134409967552 0.686534046192804 0.772128358329008 0.850552918791269 0.9212552413605 0.896430876352162 0.319824735418187 1.28908901397289 0.728382229407043 0.725899945871359 0.195910271931115 0.191669692556888 0.197082528141107 0.192910629963882 0.190179198454875 0.193761611900551 0.190588474936411 0.199688163325715 0.2045891271706 0.19518910803655 0.206406804117317 0.197124758795519 0.208625096622573 0.200702942707492 0.190179198454875 0.191859606452871 0.192429818488040 0.198000700415685 0.190827969622567 1 1 - 25672738 25673204 25673059.364 25672273 25673845 - gene protein_coding_gene FALSE TRUE AT1G68460.1 ATIPT1 (ISOPENTENYLTRANSFERASE 1); adenylate dimethylallyltransferase Encodes a putative adenylate isopentenyltransferase which catalyzes the formation of isopentenyladenosine 5'-monophosphate (iPMP) from AMP and dimethylallylpyrophosphate (DMAPP). Involved in cytokinin biosynthesis. similar to ATIPT8 (Arabidopsis thaliana isopentenyltransferase 8), adenylate dimethylallyltransferase [Arabidopsis thaliana] (TAIR:AT3G19160.1); similar to isopentenyltransferase [Brassica rapa subsp. pekinensis] (GB:BAE43826.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) 0.0478292332562343 0.486396093509243 0.63633453396054 1 -0.491697391247871 1.41536981994095 0.0478292332562343 0.0918819747263984
AT2G02340_at 2.01570247133940 1.64643607658096 2.36632052607970 2.24411820798735 1.87279741766464 2.01563387773393 1.85836179268905 1.70699850363259 2.59528334226524 2.26179814350151 2.41693520264843 2.01727450730198 2.53516420150412 2.58622278551568 2.02257446466428 2.10640825198026 2.30159244712094 2.17399678843180 2.63423650797430 0.184681180817082 0.190640038857105 0.194463738742565 0.185407956845187 0.180395081913629 0.184770191009402 0.192689781168481 0.183219020868280 0.190702753559638 0.184941133781585 0.182475355381255 0.185432732723735 0.180395081913629 0.184425540745155 0.189295096334038 0.181391435804817 0.201546125917965 0.19230293223774 0.187931420997629 2 2|0 -|/ 616131 616930 616533.5 616087 617273 - gene protein_coding_gene FALSE TRUE AT2G02340.1 ATPP2-B8 (Phloem protein 2-B8) similar to ATPP2-B7 (Phloem protein 2-B7) [Arabidopsis thaliana] (TAIR:AT2G02320.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0453789397690789 0.486275354319386 0.63641739389227 1 -0.491755506713306 4.34935964874326 0.0453789397690789 0.076341271008118
AT4G33160_at 3.13898168130697 3.05454438176560 2.66755411737516 2.88348797023250 2.73473412916501 2.45378865230584 2.59187954706121 2.36756331582154 2.84105539671898 2.83271084142706 2.74513683689018 3.02079941388138 2.80048731062282 2.8114372252109 2.95576289680798 3.01123149147839 3.07518197621769 2.34621146424961 2.82363076256168 0.237043272845199 0.233654516812598 0.230924717362901 0.236020293073529 0.227180385804230 0.228442653040838 0.227881251123863 0.229729412096916 0.228523039635665 0.226374617516356 0.225181303564960 0.229897296006722 0.232969229782337 0.230791979608052 0.224066427234910 0.220731788818056 0.226415847799391 0.232982310551153 0.220731788818056 4 4 + 15994949 15995500 15995222.545 15994240 15995590 + gene protein_coding_gene FALSE TRUE AT4G33160.1 F-box family protein (FBX13) similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G27340.1); similar to Os03g0399400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050307.1); similar to F-box protein [Zea mays] (GB:AAV64236.1); similar to Os07g0617700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060283.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.0450178021009523 -0.485981616225676 0.636618999845654 1 -0.491896834346661 5.57569009629045 -0.0450178021009523 0.074031243715382
AT1G26920_at 9.63066935237464 10.0260569916483 9.36701373944962 9.50761262047181 10.0466818312670 10.0138387689666 10.4872404021581 10.4886472461335 10.1648450472172 9.92933764416582 10.7884570553357 10.7980204157347 10.7687669364427 10.6381148665721 10.3665364284337 10.5122362390142 10.2859736096782 10.5359638890568 10.1239319884052 0.0962232884853826 0.0954073492235325 0.100363557898690 0.0964495136297391 0.0940382827800998 0.0987133596389194 0.0963769107394671 0.100090279783864 0.106398692656404 0.0962256187824228 0.0945649073982177 0.0949107492752417 0.0988848865430951 0.0996879836077763 0.096428893550591 0.0948235281956398 0.0974645078679903 0.100681377706277 0.09470227307427 1 1 + 9329652 9330061 9329848.091 9329499 9330385 + gene protein_coding_gene FALSE TRUE AT1G26920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69760.1); similar to hypothetical protein [Ricinus communis] (GB:CAH56540.1) 0.0448435143654633 0.485919315039393 0.636661763967326 1 -0.491926799142545 20.2757019057068 0.0448435143654633 0.0728434909144251
AT3G07650_at 4.37236526799321 4.48806128296988 2.77581538668455 2.8533148446928 3.72113730126801 3.57713218142343 1.82597784355545 1.79392349220487 2.17653190137802 1.91106093191395 2.37433464674733 2.18669583884806 2.03509663835759 2.28792077633891 1.96790196157234 2.13596978033640 1.77856186203867 2.14356500676242 2.34476946090867 0.269937348053198 0.274754647635146 0.259640967468545 0.260249445852338 0.274032692035561 0.276124241177861 0.258144847064837 0.263473445451158 0.264269679165842 0.269421911362935 0.265667883681394 0.2596312548332 0.267916052433212 0.258177946794477 0.262605582740097 0.258144847064837 0.264355013947606 0.258144847064837 0.258144847064837 3 3 + 2443147 2443882 2443490.818 2441663 2444538 + gene protein_coding_gene FALSE TRUE AT3G07650.1|AT3G07650.2|AT3G07650.3 COL9 (CONSTANS-LIKE 9); transcription factor/ zinc ion binding|COL9 (CONSTANS-LIKE 9); zinc ion binding This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. Identical to Zinc finger protein CONSTANS-LIKE 9 (COL9) [Arabidopsis Thaliana] (GB:Q9SSE5;GB:Q94A77); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G48250.1); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to CONSTANS-like protein [Ipomoea nil] (GB:AAG24863.1); similar to Os02g0724000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047975.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.0407015029890055 0.48581041442879 0.636736517696088 1 -0.491979167904124 5.30490423940341 0.0407015029890055 0.0351077928393930
AT2G18250_at 6.77445292563978 6.71262194153021 6.87199468293842 7.16136984334549 7.11404309727235 6.65138264736674 6.90820543827696 6.93364634089489 6.51537880626146 6.3466632018337 5.83867649777285 5.70395726259417 6.2874076904327 5.8928558052385 6.34481554784024 6.28478284301687 6.515058412641 5.64245208316181 5.9713115001403 0.217473865261554 0.217038123130193 0.235334298758796 0.214361033829746 0.216490043774074 0.229412298934578 0.230603712697143 0.223281054163318 0.224297710726526 0.223646926116453 0.21521565429496 0.217491279314124 0.213518288615602 0.215723296133362 0.219893562065333 0.213094090285262 0.225791749366171 0.230108834543711 0.219655120785978 2 2|0 +|/ 7947127 7948133 7947558.5 7946989 7948760 + gene protein_coding_gene FALSE TRUE AT2G18250.1 ATCOAD (4-PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE); nucleotidyltransferase/ pantetheine-phosphate adenylyltransferase At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis. similar to Cytidylyltransferase [Medicago truncatula] (GB:ABE77654.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) -0.048283914381298 -0.48542496226804 0.637001141406749 1 -0.492164436388619 13.0617322499493 -0.048283914381298 0.095142770092404
AT4G29600_at 1.90457703677502 1.60116783995089 1.96857289678718 1.53149406616307 1.40091905205600 1.73699809139309 1.72482295065027 1.69623122549963 2.21584739323362 1.80131525693738 2.09857353151412 1.7594283028542 1.86982150673059 2.02884816008266 1.97389331687570 1.6327287957466 2.04713591221193 2.50308473248307 2.03824629173000 0.180895130104933 0.180150633021716 0.181776244525189 0.183395535774738 0.182371786481100 0.183500423417371 0.184043957275376 0.181040322850321 0.191530920685743 0.180066055687269 0.178617706438965 0.180435009943579 0.178853104874088 0.178833512814974 0.184510063978006 0.176427356525314 0.18162202759952 0.17961179616139 0.206796496825037 4 4 + 14515930 14516462 14516235.273 14515584 14516507 + gene protein_coding_gene FALSE TRUE AT4G29600.1 cytidine deaminase, putative / cytidine aminohydrolase, putative similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29620.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) -0.0507420508035469 -0.485237966555708 0.637129538270825 1 -0.492254265752413 3.69942735971574 -0.0507420508035469 0.109019171213395
AT1G53990_at 1.78558720296758 1.34933702515185 1.49328736473383 1.69112481733875 0.936612470258268 1.69256311232305 1.23547712132431 1.42847471487065 1.61188713486850 1.18351965616449 1.19095007227865 1.36871115461344 1.44818928739033 1.02346192542379 1.50865246678214 1.60306794566535 1.72894048576275 1.25389059892757 1.75359336379770 0.224562428433223 0.214382004489004 0.223803236179853 0.215600462799052 0.216657794252742 0.2167672427886 0.221424768815477 0.212474280630028 0.220625673809343 0.225273159505563 0.212474280630028 0.214665998689253 0.218429201898573 0.217370169229567 0.223878413827267 0.215088423724476 0.221308171953761 0.216746754484682 0.212474280630028 1 1 + 20155663 20156360 20156083.273 20154684 20156420 + gene protein_coding_gene FALSE TRUE AT1G53990.1 GLIP3 (GDSL-motif lipase 3); carboxylic ester hydrolase/ lipase Contains lipase signature motif and GDSL domain. similar to GLIP1 (GDSL LIPASE1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT5G40990.1); similar to lipase SIL1 [Brassica rapa subsp. pekinensis] (GB:AAM47031.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) -0.0609612338765912 -0.485080741148045 0.637237503587453 1 -0.492329768433479 2.90509116714557 -0.0609612338765912 0.158433725102781
AT3G12980_at 8.10900614589923 7.81880372601828 7.57176604606624 7.68014638879814 7.74795891311359 8.23675996000664 7.46150781463782 7.49765230585654 7.24618211403039 7.13020267150513 7.36927185659582 7.4475692069695 7.21218346982568 6.91829136858733 7.15869679315866 7.19996216642337 7.42570141394551 7.28857853899237 7.34876240909737 0.156898477419168 0.153097543590365 0.156291181696904 0.149143112735811 0.160399191357224 0.161877338252055 0.158339545085611 0.156435602886376 0.162923941919898 0.155469864887702 0.153618707075631 0.155708333643838 0.151114870746679 0.153814950553863 0.151163179035897 0.156591277192971 0.153259371199027 0.15323830510843 0.158206130091228 3 3 + 4153633 4154247 4154000.364 4146926 4154902 + gene protein_coding_gene FALSE TRUE AT3G12980.1 histone acetyltransferase 5 (HAC5) Identical to Histone acetyltransferase HAC5 (EC 2.3.1.48) (HAC5) [Arabidopsis Thaliana] (GB:Q9LE42;GB:Q8LRK5;GB:Q8LRK6); similar to HAC1 (P300/CBP acetyltransferase-related protein 2 gene), transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G79000.1); similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to histone acetyltransferase 4 (HAC4) [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) 0.0491157245805827 0.4847210705446 0.637484519346794 1 -0.492502401383253 15.0125739542278 0.0491157245805827 0.100341360790789
AT1G79910_at 2.71228678665694 2.32576221730083 2.78734534883553 2.44767287715883 2.01331004515964 2.38653236497332 2.26353822500705 2.12994536051725 3.11223614706818 2.61512132261973 3.12906560546229 2.91057124976966 2.62681423189989 2.85577572593639 2.88304143493816 2.57465975180008 2.96387037159029 3.07065056027197 2.74786021032925 0.229441473330962 0.218513865261932 0.219146082149436 0.223383735320604 0.225468919739679 0.233923075679337 0.221449587365894 0.224931127710908 0.228357879789868 0.228746209808319 0.227201777843759 0.217137299924280 0.222145126041414 0.223946384763112 0.224040334878622 0.218533940354231 0.220543084640061 0.221065515165348 0.242451807076966 1 1|0 +|/ 30061273 30061847 30061564.222 30059779 30062063 + gene protein_coding_gene FALSE TRUE AT1G79910.1|AT1G79910.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52315.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46051.1); similar to Os02g0159200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045961.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.051282784057092 0.484337448704053 0.637748035147952 1 -0.492686395612047 5.23423849143333 0.051282784057092 0.112408373776116
AT3G07800_at 8.48152371044419 8.68124362875966 8.75451630353836 8.60372112786413 8.43091297788938 8.50652832948424 8.13273661574618 8.0534396609402 8.88661321827858 8.0324087062822 7.80624192380673 8.05852191762432 7.74446922770649 8.02961107137012 8.27555668342664 7.75628786670309 8.06231327599052 8.06863256261891 7.96634221293683 0.130775379122232 0.132079606891275 0.130991877716356 0.130334318362316 0.134749849133353 0.132727998233047 0.128256485480200 0.132335186775532 0.134492596004839 0.132710174485252 0.133554101543622 0.134543245004121 0.134041026431082 0.13065462031116 0.135210653055964 0.131603178820172 0.130813782932996 0.132936811967313 0.132789619718708 3 3 - 2489957 2490779 2490248.182 2489393 2491093 - gene protein_coding_gene FALSE TRUE AT3G07800.1 thymidine kinase, putative similar to thymidine kinase, putative [Arabidopsis thaliana] (TAIR:AT5G23070.1); similar to TK1-like deoxyribonucleoside kinase [Lycopersicon esculentum] (GB:AAQ08180.1); contains InterPro domain Thymidine kinase; (InterPro:IPR001267) -0.0416166411442733 -0.484184945669447 0.637852806391752 1 -0.492759501090262 16.5907406419942 -0.0416166411442733 0.047276848935787
AT4G29090_at 2.11231739059904 2.18300487923968 2.40255764697906 2.11495503157338 1.25890640412661 2.44498538420758 1.31691384956199 2.14098691237116 2.35533301161823 2.12695847835217 1.51991070541123 1.87297925881050 1.95770933420453 1.24608061979875 1.92928564785612 1.75405563042971 2.23771066972444 2.11666423956278 1.86399205448625 0.224483733283717 0.220773664628710 0.22265686341122 0.226486995734725 0.219790937768644 0.229361923514437 0.220723692685033 0.227021928113596 0.227230798073116 0.224757992991861 0.221529615942527 0.223205751219922 0.222191161423173 0.223193152792228 0.222555533698839 0.219790937768644 0.219790937768644 0.224753020834510 0.224481038483708 4 4 + 14334743 14335175 14334946.1 14333534 14335261 + gene protein_coding_gene FALSE TRUE AT4G29090.1 reverse transcriptase, putative / RNA-dependent DNA polymerase, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34320.1); similar to 80C09_29 [Brassica rapa subsp. pekinensis] (GB:AAZ41840.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.0845414880743837 -0.484119392494463 0.63789784467747 1 -0.492790918603627 3.9691921180208 -0.0845414880743837 0.255136325235908
AT4G18593_at 7.95487003529608 7.82367812969361 8.36125643573452 8.25135398594374 8.62748791814813 8.20495260707255 7.9441583374239 7.94854947157934 7.32057686189217 7.85796144586794 7.1798646704115 7.28130468589195 7.84001169666271 7.42484676402642 7.0813907600194 7.80752389998316 7.69647886775484 6.99981053469588 8.12020544643218 0.187521895791588 0.189482827370675 0.192766413771430 0.187050350193669 0.189800008222354 0.199719812967289 0.187110870978232 0.196293391186178 0.210229788652872 0.192090146950658 0.193969266168383 0.187027631929342 0.194678490151856 0.19320175643201 0.193921419016411 0.189735189247519 0.202359994917857 0.212791915191013 0.193191625661745 4 4 + 10238207 10238665 10238460.636 10237583 10238847 + gene protein_coding_gene FALSE TRUE AT4G18593.1 dual specificity protein phosphatase-related similar to Os12g0133700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066090.1); similar to Os11g0136800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065692.1); similar to Dual specificity protein phosphatase [Medicago truncatula] (GB:ABD33027.1); contains domain DUAL SPECIFICITY PROTEIN PHOSPHATASE (PTHR10159); contains domain HYVH1 DUAL SPECIFICITY PHOSPHATASE (PTHR10159:SF17) 0.0455524050465717 0.484099316884547 0.637911637923765 1 -0.492800539380849 15.7296143166089 0.0455524050465717 0.0788957020326309
AT3G48830_at 1.45931546958579 2.31209524614991 2.07315562437442 1.57220104008172 1.47886275353158 1.61800136241374 1.62849294387758 1.62594279717077 1.84550663513411 1.86897212161767 1.96688296700703 1.59778161714510 1.71693408570264 2.04898122370328 2.00719689650820 1.66079673727515 2.33483184579076 1.6360112364549 2.07092144777438 0.252761404721702 0.257089336608549 0.25259543816867 0.254691519174095 0.247666731084772 0.261384042657063 0.252593723554885 0.252844825044143 0.259269305661419 0.252562333112974 0.251699572415538 0.246300653134935 0.263647155546215 0.254270694856626 0.259679785959101 0.247623121787530 0.256546257919417 0.247000079946677 0.254541406958910 3 0|3 /|+ 18120052 18121099 18120504.25 18114257 18121201 + gene protein_coding_gene FALSE TRUE AT3G48830.1 polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G23690.1); similar to Os03g0131400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048863.1); similar to Putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:AAM22707.1); similar to Os04g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052662.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Nucleotidyltransferase/Poly(A) polymerase; (InterPro:IPR012277); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0640980388696595 -0.483868357004741 0.638070332648621 1 -0.492911194226307 3.62083031016841 -0.0640980388696595 0.172842966223143
AT1G10010_at 1.11421190630425 1.48033956227278 1.11157919072247 1.44446984066345 0.815278512829165 1.29273299380603 0.931303032665822 1.26237191884980 1.48093568974543 1.54059509194493 1.47509988422096 1.37389670831707 1.32144663947364 1.28894210940930 1.48739553602444 1.46333956677454 1.37747978558418 1.57276486248328 1.47614661710103 0.221177932642441 0.218354661879685 0.223730067893916 0.231613829367907 0.218224876475491 0.235691524198571 0.223300827754596 0.221016267382056 0.239610817724835 0.222696114508973 0.218434090737361 0.218224876475491 0.224095874623887 0.231219067449344 0.223579327643621 0.218224876475491 0.218594076689252 0.223062068167104 0.221738305439322 1 1|0 +|/ 3267983 3268656 3268342.9 3265978 3268728 + gene protein_coding_gene FALSE TRUE AT1G10010.1 AAP8 (amino acid permease 8); amino acid permease Encodes a high affinity amino acid transporter that is probably responsible for import of organic nitrogen into developing seeds. One of eight gene family members that encode amino acid permeases. Most closely related to AAP1 (75%) identity. similar to AAP1 (AMINO ACID PERMEASE 1), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G58360.1); similar to AAP6 (AMINO ACID PERMEASE 6), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G49630.1); similar to amino acid permease 1 [Brassica napus] (GB:CAD92449.1); similar to amino acid permease 6 [Brassica napus] (GB:CAD92450.1); similar to amino acid transporter [Solanum tuberosum] (GB:CAA70968.2); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.0551108167895447 -0.483759734783244 0.638144974562723 1 -0.492963218626411 2.64117158783075 -0.0551108167895447 0.132070874399272
AT1G02390_at 2.62487832554736 2.6378580694114 4.48939883061758 4.93594699101609 4.208791855401 4.47738374091381 4.96882171607891 6.07970853077985 2.28829297060072 4.24239706863627 2.74906250470075 2.31081721792152 4.58401634884252 3.60934044463677 1.52946268042965 1.63058182634813 4.72892684225408 2.99066136310357 3.42794064524973 0.244050120642019 0.238290542203442 0.258700636261308 0.259729759930807 0.243692819391696 0.240472595369638 0.242586734115516 0.258728824434847 0.241452032744631 0.238290542203442 0.250715686503331 0.246964832209323 0.263452381929063 0.244471803066704 0.253702798140197 0.246664793472744 0.252448478999319 0.250993882535930 0.25111295307382 1 1 + 482600 482991 482843.727 480852 483292 + gene protein_coding_gene FALSE TRUE AT1G02390.1 ATGPAT2/GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2); acyltransferase Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity. Identical to Probable glycerol-3-phosphate acyltransferase 2 (EC 2.3.1.15) (AtGPAT2) (GPAT2) [Arabidopsis Thaliana] (GB:Q9FZ22); similar to ATGPAT3/GPAT3 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 3), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G01950.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE87665.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) 0.0735643930333969 0.483563441239796 0.63827987219846 1 -0.493057204748108 7.47092461498335 0.0735643930333969 0.212356114077596
AT4G18260_at 5.09008283222282 5.32150343741058 4.67987725159182 4.91455992686021 5.25886956062099 5.21167015952496 4.74316432076779 4.67782137967756 4.20671163891509 4.05505844999902 3.8365283722766 3.85403711613289 4.25553331273867 4.18419970818435 4.03410160160033 3.99530430166291 3.92899799384449 3.66679066641332 4.07737691772737 0.20598961536411 0.204149207950784 0.202672812560532 0.200695299236791 0.204620956427400 0.204836967555293 0.200695299236791 0.212090176101885 0.211849433738332 0.200695299236791 0.204879044290626 0.202145730819652 0.202359518586602 0.207328037544491 0.211758067226259 0.205531923334869 0.207627995758690 0.210337013268867 0.203180093980103 4 4|0 -|/ 10093850 10094759 10094273.6 10093535 10097514 - gene protein_coding_gene FALSE TRUE AT4G18260.1 cytochrome B561-related similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT2G30890.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90100.1); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.0427555679886624 -0.48307325205783 0.638616801734845 1 -0.493291750215723 9.02843642674485 -0.0427555679886624 0.0587185817341365
AT1G28210_at 3.52206694787864 3.21357891533297 4.06942446877957 3.44511790674751 2.37834922661811 3.27490701894273 2.81610679490863 3.28362415181923 3.00193304762750 3.16886419342042 2.48343569925609 2.48800564986502 2.90741579533404 2.83539666491280 2.65649264850559 2.92423271261739 3.22592544232779 2.76856293587226 2.87793332804614 0.227108748781769 0.227108748781769 0.237955003000255 0.238277038668480 0.229922754849566 0.228163091096668 0.229508996508638 0.230132249902449 0.235140869123227 0.229995576153545 0.227108748781769 0.230828793710019 0.235778458581789 0.230063801564215 0.231616313848340 0.227108748781769 0.234800688661605 0.233569993419359 0.227108748781769 1 1|0 +|/ 9857060 9859926 9859008.8 9854533 9860145 + gene protein_coding_gene FALSE TRUE AT1G28210.1|AT1G28210.2 ATJ1 (Arabidopsis thaliana DnaJ homologue 1); heat shock protein binding / unfolded protein binding DnaJ homolog AtJ1 (atj) Identical to Chaperone protein dnaJ 1, mitochondrial precursor (AtJ1) (AtDjB1) (ATJ1) [Arabidopsis Thaliana] (GB:Q38813;GB:Q8GXI3;GB:Q9FZ94); similar to GFA2 (GAMETOPHYTIC FACTOR 2), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G48030.1); similar to putative chaperone protein DnaJ [Oryza sativa (japonica cultivar-group)] (GB:BAD36096.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0734773133289335 -0.4828157090926 0.63879385702664 1 -0.493414888217058 6.15161041218729 -0.0734773133289335 0.21246376462826
AT3G13060_at 9.08056429471439 9.11884387105428 9.14540870209596 9.11502834483574 9.23610218339769 8.7396914376973 8.95379640012512 8.81506362473692 8.00404760556025 8.60121228859253 8.41206285411816 8.3189777124164 8.6441290809551 8.34293314184202 8.12309469491216 8.69372612377744 8.52890046288481 8.21510958213173 8.54277657452544 0.147017344252577 0.138858934338766 0.136582424714616 0.137453712740080 0.136980279609122 0.143058701026445 0.132609857279557 0.141401560259475 0.163836814992926 0.144418327080338 0.146827787435996 0.132966875083530 0.138981818249051 0.139112419257365 0.142910733064883 0.133176518606977 0.147819041315434 0.145001321378092 0.142635074932598 3 0|3 /|+ 4183006 4183604 4183369 4180582 4183982 + gene protein_coding_gene FALSE TRUE AT3G13060.1|AT3G13060.2 ECT5 similar to ECT2, protein binding [Arabidopsis thaliana] (TAIR:AT3G13460.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE91083.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.0470892515429941 0.482689112292243 0.638880898253837 1 -0.493475394457064 17.4218351220934 0.0470892515429941 0.0895979894515824
AT1G48290_at 2.02985662506699 1.80184646820389 2.42930605441096 1.80786303635767 1.50719379756309 2.29609955439138 2.25842932832146 1.75134977344048 2.36698869274099 1.94560382261586 2.51497046695767 2.41727840856164 2.44690933408255 1.90452387788039 2.569526416181 2.2264293150423 2.23201748440396 2.6678796941681 2.5336064536988 0.231826663214568 0.214051432763276 0.229076463458821 0.221115791255418 0.215359610422527 0.223929885396821 0.22072044286077 0.220994133542819 0.222436636653208 0.218773434017163 0.224974475817289 0.220312787384255 0.214721867545665 0.217546338896290 0.221765341484698 0.217823502942885 0.219571388962228 0.214051432763276 0.214051432763276 1 1|0 +|/ 17847166 17848535 17847608.571 17846336 17848575 + gene protein_coding_gene FALSE TRUE AT1G48290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G43660.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:AAP54042.1) 0.0700603067818613 0.482628298056657 0.638922712909836 1 -0.493504454896496 4.31249717855862 0.0700603067818613 0.198650022556111
ATMG00150_at 1.47274321342537 1.50277285571211 1.42033842036720 2.07540050078572 1.68228988676482 1.6505590303528 1.53967531832909 1.53727761713142 1.45714816107267 1.31189422120288 1.28893215033304 1.41165968930217 1.25411030691734 1.40105826219023 1.38389147457818 1.13836414380899 1.29810868272435 1.17778628058082 1.38789791358494 0.211672011904545 0.210567351687639 0.203695044228698 0.203474286671147 0.205404589268911 0.203307904571314 0.202655295215878 0.203467113722204 0.215529403285924 0.200554139109987 0.204446779212138 0.202577655227314 0.210874649701420 0.208243212429849 0.201445854813049 0.205095376740986 0.219766951085976 0.207781689542063 0.211427184843228 M M + 35784 36059 35923.455 35782 36132 + gene protein_coding_gene FALSE TRUE ATMG00150.1 Identical to Hypothetical mitochondrial protein AtMg00150 (ORF116) [Arabidopsis Thaliana] (GB:P93284) 0.0513109084678501 0.482452218299103 0.639043789239194 1 -0.493588575922755 2.95007492490418 0.0513109084678501 0.113614137104896
AT4G01900_at 4.59945028606354 4.97700325903659 3.64948649919658 3.2897154717655 3.77299626633068 3.17622565887988 5.19580934777702 4.57599988975134 4.04998606500342 5.05658610687706 6.34258406742994 6.76488133091316 5.12535285658944 5.5534054042902 7.32410971772523 5.44201302598365 4.38790691524901 5.36702582819176 3.77880727604724 0.259856643550006 0.256611780187277 0.261056532374545 0.253695568234039 0.252235934168158 0.254593451103198 0.255047432583226 0.258218139949781 0.253210383078623 0.258855508715088 0.256027815433279 0.257479082318276 0.259188278184523 0.257983045626472 0.259342029684256 0.252235934168158 0.260101626403633 0.263507590623455 0.256469509029258 4 4|0 +|/ 821753 822609 821928.5 821685 823510 + gene protein_coding_gene FALSE TRUE AT4G01900.1 GLB1 (glutamine synthetase B1) encodes a PII protein that may function as part of a signal transduction network involved in perceiving the status of carbon and organic nitrogen. Forms a protein complex with N-acetylglutamate kinase and regulates the kinase activity by relieving the feedback inhibition of the kinase by arginine. similar to PII protein [Ricinus communis] (GB:AAC78332.1); contains InterPro domain Nitrogen regulatory protein P-II; (InterPro:IPR002187) 0.0641618445200073 0.48212814343199 0.639266659014921 1 -0.493743324075853 9.1963540228197 0.0641618445200073 0.17411400838858
AT1G51690_at 7.98911490952379 7.90315218285034 7.9569442521333 7.42442499210717 8.63178268767283 7.76554538314717 8.28062670703886 8.14453687905619 7.80005237370799 8.28999458390422 8.59789039516321 8.9090349234695 8.70822340379442 8.3793998263384 8.240590059173 8.74527284193234 7.7671098698106 7.8435580741308 8.31201061207205 0.215657755234873 0.227250126554578 0.215657755234873 0.229349004257368 0.221511417861794 0.233322003534808 0.217805852712759 0.215657755234873 0.239937533698807 0.220496131362646 0.234941510422299 0.217346423436681 0.218081662176043 0.228628914880592 0.227943611333098 0.219844291432265 0.247273738701422 0.223920522973164 0.218502827343864 1 1|0 +|/ 19172621 19173595 19173066.778 19167731 19174114 + gene protein_coding_gene FALSE TRUE AT1G51690.1|AT1G51690.2 ATB ALPHA (protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform); nucleotide binding 55 kDa B regulatory subunit of phosphatase 2A mRNA, Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (PP2A, subunit B, alpha isoform) (AtB alpha) (PP2AB1) [Arabidopsis Thaliana] (GB:Q38821;GB:Q8L842;GB:Q9C8H8); similar to ATB BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G17720.1); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046)|Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (PP2A, subunit B, alpha isoform) (AtB alpha) (PP2AB1) [Arabidopsis Thaliana] (GB:Q38821;GB:Q8L842;GB:Q9C8H8); similar to ATB BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G17720.2); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0650911967398011 0.482035936676751 0.639330077397586 1 -0.493787335337522 16.2784680562519 0.0650911967398011 0.178158398986071
AT3G04530_at 2.67441638694786 2.39198560831093 2.49865072886731 2.63907011615978 2.12897565691199 2.26445596634327 2.68703401109659 2.35451134669813 2.80451108459974 2.38463401657908 2.3328617077493 2.68554229188184 2.29990786886984 2.49267218226604 2.67822429995161 2.6156407569077 2.76207596636862 2.24011350856914 2.19375917709795 0.228466890451199 0.231517812563525 0.233690837873304 0.232411831219371 0.243341192730015 0.235020954721501 0.239734837664637 0.229871471449232 0.230035887387413 0.226882875482410 0.228666212050991 0.228150924032517 0.229729442131716 0.227126550557631 0.231955677726464 0.231267776577541 0.228134948493240 0.229023172034861 0.227697287238859 3 3|0 +|/ 1221823 1222311 1222009.9 1221552 1222575 + gene protein_coding_gene FALSE TRUE AT3G04530.1 PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2); kinase Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light. similar to PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE), kinase [Arabidopsis thaliana] (TAIR:AT1G08650.1); similar to phosphoenolpyruvate carboxylase kinase [Glycine max] (GB:AAN12515.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0458934955656003 -0.481605548363236 0.639626131688933 1 -0.493992657891421 4.9420614354567 -0.0458934955656003 0.0827069112193021
AT1G73177_at 3.50872640631984 4.01257805297104 3.77561583212182 4.10920458049108 3.74101120787434 4.05570814858633 4.23442652067942 4.2104549716725 3.96811235115177 4.48935911440649 4.16851857043192 4.44083569701568 4.05673760418381 4.37750086118251 4.76185951043102 4.12239931225924 4.60693930435993 4.08425708482485 4.62325534006844 0.213110793770723 0.209125265384898 0.217793443446732 0.207562324109602 0.213687519993524 0.207697021192847 0.207562324109602 0.232635915646151 0.226618205795798 0.209042213602822 0.210725152228708 0.208677057870511 0.213496978516026 0.208735847644959 0.22443507032302 0.207562324109602 0.219042424450051 0.212041199183949 0.217608995595586 1 1|0 -|/ 27520385 27520987 27520742.222 27520233 27521515 - gene protein_coding_gene FALSE TRUE AT1G73177.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32847.1) -0.0520114105492111 -0.481202394940826 0.639903511238592 1 -0.494184828763893 8.29977734590372 -0.0520114105492111 0.117976675473951
AT3G29140_at 3.4843253525195 3.57309441784906 3.48294510135244 3.93801238533416 2.81445932685886 3.50426569874519 2.74441353108365 3.50864865215948 3.94794545557861 3.98348247614657 3.79476284292393 3.58000660672875 3.72525404031896 3.87955422358247 4.00406151947003 3.82731280988069 4.04913284014829 3.68699036867471 4.2594525668745 0.237295825176223 0.237612523238936 0.236092296113361 0.2303288182402 0.24157693311552 0.226886280782879 0.234080136973437 0.226886280782879 0.230763549100369 0.226886280782879 0.226886280782879 0.239092997467660 0.231198545982791 0.236141867331267 0.226886280782879 0.226886280782879 0.239323682910605 0.240179255057797 0.226886280782879 3 3|0 +|/ 11107161 11107357 11107272.429 11107042 11107381 + gene protein_coding_gene FALSE TRUE AT3G29140.1 unknown protein -0.0689711433654189 -0.480531626647931 0.640365143943134 1 -0.494504222749026 7.32227617790406 -0.0689711433654189 0.195395064583667
AT1G71350_at 5.24881039903576 5.73170003791386 5.42701465219707 5.61573859700978 5.46217192353796 5.74086875131391 4.92471310312845 6.03688471278794 5.23568299173543 4.94428522307343 4.59244702845155 4.8525417826004 5.01796449286116 5.25874838076526 4.53039965167861 5.27631544274133 4.92670115634573 4.36639722617647 5.05236488620351 0.232448953693212 0.228124579364801 0.232817660081961 0.228124579364801 0.236801940069050 0.232619948987439 0.231654113194875 0.233694211739485 0.232067424087499 0.23599888633201 0.228627391048979 0.232112890218178 0.228403005528517 0.229139213571483 0.237392133355814 0.231714433496508 0.233611821614637 0.228877505234642 0.228124579364801 1 1 - 26892251 26892773 26892518.182 26892070 26894893 - gene protein_coding_gene FALSE TRUE AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein similar to pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G09150.1); similar to hypothetical protein LOC395035 [Xenopus tropicalis] (GB:NP_989398.1); similar to Ligatin (GB:Q5RA63); similar to Os02g0557600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047140.1); contains InterPro domain Uncharacterized domain 2; (InterPro:IPR004521); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950); contains InterPro domain PUA; (InterPro:IPR002478) -0.0744167770016914 -0.480379202113794 0.640470066965368 1 -0.494576742082322 10.4885546532189 -0.0744167770016914 0.217760036908727
AT4G02170_at 1.64361991066078 1.48569409972267 1.27335433988019 1.41342643879706 0.993708841184344 1.82726721805152 1.06190170842466 1.30152091530686 1.37844589364108 1.56473037679470 1.24351541434660 1.40171122972983 1.27158593381033 1.37462371173701 1.0412631605855 1.20421484907382 1.61121064772308 1.47269328821328 1.40784882073129 0.221410253732599 0.221207700312703 0.216669197009309 0.221196305481517 0.223063533417682 0.226166124321777 0.218523774671685 0.222397805368480 0.253288912524333 0.220622924247619 0.222763397760107 0.218972378122348 0.218652662573848 0.218653140801618 0.215554969443808 0.218510788731743 0.215554969443808 0.217031104712856 0.215729118001516 4 4 + 958234 958614 958374.636 958049 958641 + gene protein_coding_gene FALSE TRUE AT4G02170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38700.1); similar to At5g38700 [Medicago truncatula] (GB:ABE84418.1) -0.0594921833518598 -0.480367455386111 0.640478153289184 1 -0.494582329934805 2.76403367223257 -0.0594921833518598 0.154474692809927
AT3G09060_at 2.00475796895511 2.22673428112007 2.37721696989137 2.30926765546169 2.00102399297793 1.84859938507032 1.72358484726643 2.04860021020586 1.80201059266163 2.08430548638372 1.8582809893364 1.92413428750756 2.00531060114759 2.09665241916882 1.71511690201468 1.97747019302365 1.9444004449447 2.04505832540351 2.08350668927749 0.195440902843727 0.197139404959743 0.19920855339622 0.197388744705968 0.194596081482796 0.203039269951744 0.199678233979927 0.192339430384708 0.19769791557058 0.200854865218415 0.208543792708643 0.196925713959878 0.198579603587086 0.197804095646366 0.198634757162746 0.197525134802755 0.194311890606807 0.194186796778534 0.19417138050248 3 3 - 2766375 2766914 2766642.727 2766372 2768435 - gene protein_coding_gene FALSE TRUE AT3G09060.1 pentatricopeptide (PPR) repeat-containing protein similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Os01g0852900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044829.1); similar to fertility restorer [Raphanus sativus] (GB:CAD61285.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0444848857537715 0.480304532007251 0.640521469912127 1 -0.494612260010629 4.03534513541492 0.0444848857537715 0.0739813929479447
AT1G54640_at 2.46199767818487 2.01772605206847 2.34304653492989 2.27649620172013 2.16613867386500 2.00075945596092 2.34422789056995 2.34629937327128 2.56535113315816 2.34377528837737 2.05038792811443 2.45339204582043 2.32624134943008 2.32920671339679 2.3045805326754 2.58200460795795 2.83216898081404 2.57312497220453 2.37186460527766 0.172586659369044 0.175769402957812 0.173207124469220 0.183895328022269 0.176328956455643 0.1755470489054 0.17645553841694 0.17432943382276 0.180027352433691 0.177570727201651 0.176690287207952 0.173732736972488 0.175296150533025 0.177377325181905 0.176797694500227 0.175556744540774 0.176832786977864 0.185908909300484 0.178593752384884 1 1 - 20407621 20408307 20407970.455 20407559 20408474 - gene protein_coding_gene FALSE TRUE AT1G54640.1 F-box family protein-related similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT1G32600.1); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.0457805747703409 -0.480202345003166 0.640591818702523 1 -0.494660858204395 4.67377918269103 -0.0457805747703409 0.0828425529720228
AT2G23410_at 0.545503804268906 0.489403076447534 0.826930820274708 0.721985484982296 0.463621282001782 0.501580386356612 0.619367908821989 0.447658269448726 0.598752164732423 1.13550162107596 0.489600591318904 0.65254884066879 1.20574262180355 0.678703977302792 0.673874264983444 0.293614398159839 0.980494119128608 0.703798831616516 0.462355956366386 0.217876419191569 0.216938028245921 0.219227798930598 0.214593991534349 0.220899606453846 0.218063766768945 0.215357032990495 0.220454036367534 0.226977510727192 0.214593991534349 0.217423638298017 0.218190048940644 0.221092479464817 0.218963316301826 0.216504311979520 0.217456854375819 0.220092564916575 0.218815411442134 0.218647813561429 2 2|0 -|/ 9973353 9974050 9973691.375 9973210 9974850 - gene protein_coding_gene FALSE TRUE AT2G23410.1 ACPT (ARABIDOPSIS CIS-PRENYLTRANSFERASE); dehydrodolichyl diphosphate synthase encodes cis-prenyltransferase Identical to Dehydrodolichyl diphosphate synthase 1 (EC 2.5.1.-) (Dedol-PP synthase 1) (DPS) [Arabidopsis Thaliana] (GB:O80458;GB:Q9SEB8); similar to dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative [Arabidopsis thaliana] (TAIR:AT5G58780.1); similar to Os01g0857200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044851.1); similar to Di-trans-poly-cis-decaprenylcistransferase [Anabaena variabilis ATCC 29413] (GB:YP_321433.1); contains InterPro domain Di-trans-poly-cis-decaprenylcistransferase; (InterPro:IPR001441) 0.0403200934441372 0.479781828278602 0.640881354660994 1 -0.494860743966562 1.29800660558252 0.0403200934441372 0.0367454628919325
AT1G54700_at 1.56832648361914 1.34301514029704 1.75807143649938 1.7232492010581 1.29301874815362 1.39426934775565 1.52232559237191 1.651443947905 1.42580617622962 1.6989392888183 1.62814299531021 1.46025423469506 1.7887133572643 1.45108054087554 1.45543272827255 1.13512859420073 1.26924598980684 1.46037662904213 1.55403232632769 0.173345552809202 0.169855685892935 0.175698414054426 0.170840985856701 0.174485169316922 0.177140472662741 0.172693159506641 0.170853827290122 0.176430480582546 0.170294221068603 0.173851283872496 0.176297639703399 0.170769976958975 0.171551691868774 0.173521691586691 0.173440879261904 0.179747563535200 0.176984459163366 0.169658577716536 1 1 + 20419565 20419900 20419766.455 20419565 20419936 + gene protein_coding_gene FALSE TRUE AT1G54700.1 protein binding similar to DEGP13 (DEGP PROTEASE 13), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT5G40560.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478) -0.0413356605616848 -0.479393780329031 0.641148590502417 1 -0.495045047778045 3.03953472761179 -0.0413356605616848 0.0486098885690186
AT2G19500_at 1.28573672550727 1.7105391252156 1.58281923445875 1.58057939086978 1.53669679432912 2.02230246788412 1.57464670199014 1.56119741995532 1.94900922332607 1.99295562593803 1.76741546022831 1.78232263944941 1.90503106986076 1.68969893205103 1.60417180489845 1.96693170990444 2.12884950198519 2.11355350675776 2.41350033762154 0.266143777258763 0.269967855809107 0.281209875593574 0.266143777258763 0.266143777258763 0.272544697528854 0.267034714970047 0.285056587078031 0.277825258795484 0.267637401192683 0.27314003499673 0.268150048786151 0.267083186193564 0.266482155448431 0.269003520204125 0.270967215193423 0.275764887586653 0.266143777258763 0.274761314726017 2 2|0 -|/ 8451402 8452196 8451805 8451286 8454437 - gene protein_coding_gene FALSE TRUE AT2G19500.1 CKX2 (CYTOKININ OXIDASE 2); cytokinin dehydrogenase It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 2 precursor (EC 1.5.99.12) (Cytokinin oxidase 2) (CKO 2) (AtCKX2) (CKX2) [Arabidopsis Thaliana] (GB:Q9FUJ3;GB:Q9ZUP1); similar to CKX4 (CYTOKININ OXIDASE 4), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G29740.2); similar to cytokinin oxidase [Dendrobium cv. 'Sonia'] (GB:CAC17752.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Oxygen oxidoreductase covalent FAD-binding site; (InterPro:IPR006093) -0.0505860443841354 -0.479044204876819 0.641389377122441 1 -0.495210957022667 3.60093234441149 -0.0505860443841354 0.111678041993015
AT2G19270_at 6.5031238791402 7.00796897150822 6.41681467607546 6.82973309987706 6.61857059823185 6.3142683914268 5.88559473648321 6.74944278271852 7.038997379699 6.7255743149658 7.29936071547482 7.00975843751242 7.00999063387056 7.07528798935537 6.7217849419957 6.7497185497073 6.18463317976938 6.4883283092046 7.12379698381134 0.193888485486584 0.196994533957116 0.198941072792171 0.20602997855261 0.209686755426361 0.213975616460154 0.202069992353128 0.199923149800626 0.212960203183841 0.205026658480494 0.194124672398788 0.205854367618051 0.195879809580179 0.207466731350132 0.203527283186884 0.197779139509638 0.215148907327369 0.205575345297012 0.199990602464003 2 2|0 -|/ 8367450 8368471 8368033.8 8367271 8369006 - gene protein_coding_gene FALSE TRUE AT2G19270.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51685.1); similar to Os02g0175900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046059.1) -0.0685588079702604 -0.479024017966119 0.641403283128811 1 -0.495220534240721 13.4307633439843 -0.0685588079702604 0.194577131828947
AT4G28750_at 13.6628015932541 13.7403026163041 13.7226753472331 13.6438272590304 13.7828649704716 13.6396822396083 14.0024918639441 13.9212511161261 14.3126991283423 14.4376322583277 14.7550396794625 14.7160032425850 14.6041968548443 14.4357578017322 14.6566556375581 14.5274516798784 14.2931486014686 14.5565697356426 14.3102248504574 0.066760301035583 0.066106210221132 0.0670200034526134 0.0679679224896405 0.068824291881875 0.072943946305088 0.0691687767992353 0.06687337619193 0.0717978432875782 0.0673521668862738 0.0687389309575654 0.068256300028421 0.0703082045984123 0.0738288506939103 0.066106210221132 0.0667592586161425 0.0725526205698468 0.0696537370763843 0.0666975356352326 4 4|0 -|/ 14202960 14203771 14203431.6 14202779 14203961 - gene protein_coding_gene FALSE TRUE AT4G28750.1 PSAE-1 (PSA E1 KNOCKOUT) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I Identical to Photosystem I reaction center subunit IV A, chloroplast precursor (PSI-E A) (PSAE1) [Arabidopsis Thaliana] (GB:Q9S831); similar to PSAE-2 (photosystem I subunit E-2) [Arabidopsis thaliana] (TAIR:AT2G20260.1); similar to Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) (Photosystem I 10.8 kDa polypeptide) (GB:P13194); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375) 0.0400674075580736 0.478930424914072 0.641467757754175 1 -0.495264932284106 28.2252979506743 0.0400674075580736 0.034317565874173
AT1G33070_at 0.370049275698537 0.499793494364192 0.77887878615941 0.620170134351299 0.132862212471811 0.0688681647698614 0.42666289573853 0.621908859540109 0.333169535826068 -0.00602579224271228 0.410094627951563 0.205205709355133 0.415938829048123 -0.111697205401785 0.533758899343929 0.241739780312629 0.91337860253307 0.96401391681742 0.525586509391081 0.199138341858504 0.20236336081916 0.201489381301507 0.211259089710317 0.200950215725924 0.201814616878797 0.199879942587205 0.204769432386259 0.204198411730298 0.207349269070211 0.206568912643951 0.200855027118908 0.210156202990179 0.203807178061165 0.202439470751221 0.202336730187152 0.209036556543868 0.219933855243405 0.204394216315376 1 1|0 +|/ 11982907 11985159 11984513.667 11982869 11985279 + gene protein_coding_gene FALSE TRUE AT1G33070.1 sequence-specific DNA binding / transcription factor similar to MADS-box family protein [Arabidopsis thaliana] (TAIR:AT1G31630.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) 0.0414509602198089 0.478842515221874 0.641528320026581 1 -0.495306626742481 0.805298009213297 0.0414509602198089 0.0502270771725189
AT1G51210_at 3.02911727174082 2.86115790070016 3.26608725280439 2.95229795236538 2.85797794539394 3.26594034804755 3.38706562337831 3.14818532913394 3.75583736768633 3.32888710926139 3.36739258324622 3.15217943069951 3.53219936132611 3.34895312653486 3.50994400470318 3.24411512875887 3.72478259141523 3.71132272226591 3.49243138423486 0.209809390507767 0.210407312136864 0.21027487408612 0.213521764345314 0.205251903251997 0.213172124521582 0.210027040004215 0.204541437317056 0.220656251615310 0.20673872282066 0.213257668953524 0.206832024032468 0.208178281960441 0.215050280949063 0.216977406829677 0.212713886374167 0.216123110495449 0.209830738270627 0.203575255282003 1 1 + 18992307 18992749 18992539.909 18991477 18992778 + gene protein_coding_gene FALSE TRUE AT1G51210.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G03490.1); similar to putative glycosyltransferase [Solanum aculeatissimum] (GB:BAD89044.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) -0.0488315791804736 -0.478346357718140 0.641870181290455 1 -0.495541810840915 6.58326857245203 -0.0488315791804736 0.102405554964036
AT2G18920_at 1.20587318715082 1.13347389918924 0.953566021098142 0.91182081299316 0.868684823273218 1.52172943678001 0.951605431974272 1.34721108790068 1.05701944563557 0.987059673742788 1.15693661517242 1.03324416499593 0.97781905925353 1.22143323214597 0.624940489521856 0.884147738896002 1.49246403869148 0.762640455934783 1.05469275571842 0.188292092167939 0.191810279858543 0.188292092167939 0.188292092167939 0.188292092167939 0.191449580817027 0.189896287709481 0.19136558141282 0.195989200019850 0.191800387191975 0.192745378518765 0.192194874000510 0.194945789767048 0.189684284768638 0.194804346666513 0.195890665203209 0.203107297307290 0.212227959751209 0.190115176759940 2 2 - 8204853 8205172 8205011.182 8204835 8205242 - gene protein_coding_gene FALSE TRUE AT2G18920.1 unknown protein -0.0546556810283583 -0.478241560044747 0.64194239983681 1 -0.495591456279638 2.13780917889099 -0.0546556810283583 0.132920787693184
AT2G43370_at 5.53617207680886 5.01953609823934 5.55788986208653 5.70940058687339 4.89501923231316 5.70774586135754 4.73305784659681 4.75441409067678 4.88521831844141 5.41459126930698 4.22813423796443 4.01550150548735 4.76864376319963 4.47750041292444 4.44937376779792 4.99498705974573 5.23675084891505 4.51352500948401 5.20137020720969 0.284026093564972 0.294342084634174 0.287696647181142 0.284026093564972 0.294755337846261 0.308485403390827 0.284026093564972 0.297857700800499 0.299336046769147 0.302989210038793 0.29957655021936 0.290410329526756 0.301148724725737 0.28517547242193 0.297395605944472 0.296779780986226 0.284026093564972 0.284026093564972 0.288226874485878 2 2|0 +|/ 18021175 18022205 18021836 18020447 18022531 + gene protein_coding_gene FALSE TRUE AT2G43370.1 U1 small nuclear ribonucleoprotein 70 kDa, putative similar to U1-70K (SPLICEOSOMAL PROTEIN U1A), RNA binding [Arabidopsis thaliana] (TAIR:AT3G50670.1); similar to Os09g0513700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063653.1); similar to PREDICTED: similar to U1-snRNP binding protein homolog [Gallus gallus] (GB:XP_415114.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.062394499192832 -0.478064628231052 0.642064336503251 1 -0.495675249980433 10.1154604605403 -0.062394499192832 0.168748165986679
AT3G28560_at 1.34224830333584 0.982904139064508 1.53773430243965 1.51234413120019 0.98856968070487 0.981487389152706 1.23061971615430 1.00313176657141 1.40655393919262 1.27512018578434 1.19408578505759 0.934246634582283 1.11620420073516 1.06767685890319 1.41014548870959 1.29244172732123 1.06618332193273 1.60509189844032 1.03112820128711 0.225053999035864 0.232594611401346 0.229891599942646 0.230357110691814 0.225053999035864 0.226902194239838 0.232043478193459 0.225053999035864 0.246660490802795 0.232190200253687 0.230679075644103 0.225617816425032 0.230216200450125 0.233605756900698 0.228904770014811 0.225053999035864 0.251784784451443 0.232657805358357 0.229943345205671 3 3 + 10709020 10709443 10709238.455 10708333 10709716 + gene protein_coding_gene FALSE TRUE AT3G28560.1 similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28510.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78645.1); contains domain BCS1 AAA-TYPE ATPASE (PTHR23070); contains domain AAA-TYPE ATPASE-RELATED (PTHR23070:SF1) 0.0442333043158727 0.477951786836957 0.642142109530373 1 -0.49572867541754 2.42156006101874 0.0442333043158727 0.0737411519300463
AT2G32170_at 8.29721107779041 8.38313503562638 8.13080863934875 8.14264236548371 8.53813319689554 8.52094109750274 8.31206880813682 8.34791085025089 8.26942963169795 8.34422192050529 8.73016757370257 8.64601812962011 8.24427800158845 8.41612294489098 8.46722367556663 8.57646467314554 8.17791724231022 8.23097275151771 8.45484378940442 0.186105423333657 0.173645367818601 0.175858276454321 0.18119949529294 0.176046597613755 0.175186962864648 0.176779056131136 0.173737516222915 0.197259901314358 0.182351201761045 0.178407309116162 0.182048556644819 0.189389131436786 0.180158716283306 0.182613815291869 0.170400800870658 0.182959475429702 0.187520183579872 0.176674372206140 2 2 + 13676859 13677940 13677331.7 13673533 13678181 + gene protein_coding_gene FALSE TRUE AT2G32170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32160.2); similar to Os05g0511300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056014.1); similar to hypothetical protein LOC503765 [Danio rerio] (GB:NP_001013361.1); contains InterPro domain N2227-like; (InterPro:IPR012901) 0.0390151960150562 0.477849283269322 0.642212761364967 1 -0.495777195899503 16.7302617528354 0.0390151960150562 0.0165112504646478
AT1G53280_at 9.00871442265664 9.16311779908258 9.41571939496645 9.6472124354882 8.88305708587132 8.83693258374063 8.97172353815134 9.15107634603725 8.74827569323813 9.03920372496622 8.19598256263745 8.7736101646105 8.34130321022294 8.56379469747873 8.67770589084882 8.85288502019911 8.76864919509813 8.82231396224591 8.70544770803682 0.11335921719529 0.110851812387813 0.115010225423118 0.111288977595623 0.114917690333590 0.119285868185342 0.116015336757569 0.114463084345956 0.120447857373720 0.115971677170255 0.122936255447112 0.110851812387813 0.113769997513475 0.110851812387813 0.114908122630883 0.112909906195036 0.118381549431714 0.117115252207399 0.118032341570359 1 0|1 /|- 19868622 19869282 19868833.333 19868438 19871057 - gene protein_coding_gene FALSE TRUE AT1G53280.1 DJ-1 family protein similar to 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana] (TAIR:AT3G14990.1); similar to ThiJ-like protein [Brassica rapa subsp. pekinensis] (GB:AAP96742.1); contains InterPro domain DJ-1; (InterPro:IPR006287); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) -0.0421863861473315 -0.477786777070225 0.642255846341922 1 -0.495806778581346 17.8624473490817 -0.0421863861473315 0.0578438494581735
AT3G61040_at 1.85643796218462 1.8385756818586 1.51777291833013 1.30151051265528 1.53006437816199 1.89982496306915 1.40024877236940 1.52631165099205 1.68290156621599 1.91458878445685 1.68224602664019 1.65406822744256 2.20748504146608 1.98558462088421 2.09032924605268 1.53561946083166 1.85011415658170 1.73243681226178 1.91819698765668 0.211737881945233 0.205959691807057 0.207925918270503 0.208163063941388 0.206625166703922 0.209245692511461 0.202361456514355 0.206232408566921 0.204469141442375 0.20459432420083 0.207087872238246 0.208784544901026 0.205755501541170 0.205259103896450 0.202361456514355 0.208831946890052 0.204566370817301 0.203297014227126 0.204969889812691 3 3 - 22605063 22605744 22605337 22604948 22607100 - gene protein_coding_gene FALSE TRUE AT3G61040.1|AT3G61040.2 CYP76C7 (cytochrome P450, family 76, subfamily C, polypeptide 7); oxygen binding encodes a protein with cytochrome P450 domain similar to CYP76C3 (cytochrome P450, family 76, subfamily C, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45580.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0447136604433813 -0.477609410009935 0.642378111399233 1 -0.495890702007389 3.44924230251763 -0.0447136604433813 0.077334957494652
AT1G35860_at 1.06791124256398 1.69305932133700 1.24712787798829 1.44903242430163 0.814602867555912 1.32163425878675 1.05211398711366 1.26637140571781 1.48391114708283 1.56833858945009 1.44074633359162 1.13540912870225 1.29324567809802 1.45770176725293 1.71102759339019 1.14674550487151 1.24881033850816 1.58581283033237 1.24154557285461 0.179096258674905 0.186173495517832 0.179250719106314 0.176876320797159 0.179407542885255 0.18439409528737 0.175998353933256 0.179299455809092 0.175998353933256 0.180590259904974 0.178933213629391 0.175998353933256 0.186528433311287 0.178763294884874 0.184808379116212 0.176698950218893 0.188094280860733 0.185006374846582 0.182176630829011 1 1|0 -|/ 13333277 13334211 13333735.3 13333259 13335262 - gene protein_coding_gene FALSE TRUE AT1G35860.1 TOC75-I (TRANSLOCON OUTER MEMBRANE COMPLEX 75-I) TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the gene similar to TOC75-III (translocon outer membrane complex 75-III), protein translocase [Arabidopsis thaliana] (TAIR:AT3G46740.1); similar to Bacterial surface antigen (D15) [Medicago truncatula] (GB:ABD33137.1); contains InterPro domain Bacterial surface antigen (D15); (InterPro:IPR000184) -0.0577961691553829 -0.477458900889742 0.642481871067047 1 -0.49596189390346 2.64333292315691 -0.0577961691553829 0.148319320080968
AT3G23820_at 11.3616559314038 11.7712208537941 10.9158967678351 11.2317076474744 11.7984667878987 11.5666041269606 12.0593897620687 12.3090806528924 12.1664089039792 12.2067792679724 12.8728025973751 12.7227296569375 12.4912855652891 12.7592878137251 12.4571020731055 12.6298775604668 11.9958351331186 12.5868598871885 12.1262722531921 0.0780820780638419 0.0753467241590458 0.0783363509787078 0.076040447375805 0.07479440183448 0.0779673109632568 0.0761244998278749 0.0763075267252477 0.07757820158015 0.0743725844683431 0.0735850965184043 0.07432345667335 0.073620436783544 0.076291807290266 0.0769527915700778 0.0750257730113343 0.0768804008796213 0.075640621362276 0.0752103854642998 3 3 + 8604570 8605006 8604774 8603451 8605469 + gene protein_coding_gene FALSE TRUE AT3G23820.1 GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to NAD-dependent epimerase/dehydratase; TonB box, N-terminal [Medicago truncatula] (GB:ABE89734.1); similar to putative NAD dependent epimerase [Trifolium pratense] (GB:BAE71216.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) -0.049591119989004 -0.477433133917982 0.642499635391016 1 -0.495974079716008 23.9922324884319 -0.049591119989004 0.107180197470645
AT3G58460_at 7.8856793711496 7.37058160583097 7.03480008578286 7.38509158574358 7.80435310072505 6.57596179801764 7.06242300240486 6.81871987916875 6.692348821419 5.94017509829585 6.03035473342892 6.13915921116222 6.0024080604495 5.82003454374605 6.3770034336992 6.0110054164938 6.16389052289313 6.01425682031488 5.80407532680627 0.246139613069092 0.241490241275255 0.258841005758283 0.246461477464997 0.249562934193792 0.251015046079282 0.251983933052912 0.246724702206052 0.252753696523210 0.240130663790294 0.240130663790294 0.240130663790294 0.243542952242607 0.245654752130776 0.247836170085553 0.240130663790294 0.263599499860329 0.245216993277188 0.243705479362141 3 3|0 -|/ 21634470 21635554 21635138 21634156 21637425 - gene protein_coding_gene FALSE TRUE AT3G58460.1 rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein Identical to Protein At3g58460 [Arabidopsis Thaliana] (GB:Q8LB17;GB:Q8L7A1;GB:Q9M2H0); similar to rhomboid family protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G17611.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68399.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.0800341557357551 -0.477410007752606 0.642515579283297 1 -0.49598501609321 13.3498498910765 -0.0800341557357551 0.242051840218784
AT4G11950_at 2.53544549630172 2.36091922093102 2.51773176338857 2.19513865314736 2.34438683981434 2.41714414289458 2.85929162004311 2.28174474137459 2.99393312528282 2.48154193000873 2.85607171147842 2.39677312781480 2.36844103086294 2.52865330936995 3.09641298851147 2.33566704104267 3.02777738794122 3.33395035562552 2.64186327595357 0.208485394975258 0.208670541383453 0.215293668856416 0.213242006679021 0.207790008481584 0.211639525972089 0.211304454843835 0.212023421071574 0.201498148465088 0.205357130432823 0.203208766039131 0.205604421346407 0.202551970027796 0.202361016933369 0.213040158473573 0.209118461844075 0.219475463576597 0.205125841039826 0.214261965557017 4 4 - 7173310 7173840 7173587 7173270 7174253 - gene protein_coding_gene FALSE TRUE AT4G11950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22900.1); similar to Os12g0117800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066004.1); similar to Os11g0118600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065599.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16689.1); contains InterPro domain Protein of unknown function DUF1191; (InterPro:IPR010605) -0.05178049725945 -0.47713138229697 0.642707687069375 1 -0.496116738429011 5.16334921615154 -0.05178049725945 0.119066105746833
AT3G45710_at 1.79557240213666 1.44425908761325 1.57160787737403 1.22992455394157 1.26080728360439 1.61612249041388 1.12741031094217 1.31683961427378 2.13319432427069 1.83600400452111 2.01383802177563 1.61094537645824 1.53953714293344 2.16681286871718 2.15688520210614 1.77310177934510 1.86958574891402 1.93474396555279 1.37628852403629 0.193939656179818 0.196293614148336 0.199385191256858 0.201227117728037 0.203646265797467 0.192536479678971 0.206121084771851 0.191705248215181 0.213741473935673 0.199375824217836 0.197706082459146 0.197899720106925 0.201730825221819 0.198692045077022 0.199855870872838 0.191705248215181 0.210087414939869 0.203109670001882 0.196688832190944 3 3 + 16795037 16795414 16795219.545 16793628 16795720 + gene protein_coding_gene FALSE TRUE AT3G45710.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45680.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45700.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G45720.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD33073.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.0499737549373087 0.476587758728218 0.643082585439099 1 -0.49637352902126 3.25282305962147 0.0499737549373087 0.109763717580420
AT4G02090_at 2.13988420001881 1.97693392750697 2.27832941498758 2.45462867683708 2.25416213998704 1.95236214409468 2.13790817823063 2.21670533881835 2.14073149075836 2.18941833006964 2.13910960399171 2.14113861582417 2.43495116891577 2.93013570443588 2.38071301290149 2.09431821115776 2.28727467515734 2.13251519530297 2.71345162960081 0.216243855025476 0.225036970798559 0.219586071605779 0.218506562744880 0.233079214570456 0.219214775320676 0.224531183218189 0.218819490584377 0.221900794225768 0.219224539450916 0.223239016791579 0.213913845393958 0.218692888969554 0.221589316140301 0.216111189258930 0.21988566335459 0.219291851002341 0.217643698531682 0.218499822029597 4 4 + 923144 923569 923399.455 923100 923916 + gene protein_coding_gene FALSE TRUE AT4G02090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17350.1); similar to hypothetical protein MtrDRAFT_AC152921g14v1 [Medicago truncatula] (GB:ABE78097.1) 0.0433325280754242 0.476449258581947 0.643178115714595 1 -0.496438907376157 4.50905758936205 0.0433325280754242 0.068115522800141
AT1G31910_at 9.7181329555792 9.8337516226666 9.9968002592436 9.90407853352604 10.0653476306719 9.48296971825344 9.94404136605248 9.5994526867881 9.50778303556438 9.65688204184614 9.78974134088992 9.74147620256295 9.6849810762172 9.51923770107954 9.7111082460124 9.71562037927527 9.62787034858138 9.45512528298389 9.75653612003986 0.115507573643187 0.117866045688659 0.120920936818119 0.116618512670765 0.120908532170181 0.125893435408155 0.114237209637736 0.120037713671370 0.126579844813925 0.118626966915443 0.125712322334462 0.115502292986367 0.118543882942705 0.127610480935736 0.120460148429549 0.113364697802592 0.122767286110159 0.114559044005128 0.117197708661338 1 1|0 +|/ 11460921 11461600 11461355.1 11457106 11461805 + gene protein_coding_gene FALSE TRUE AT1G31910.1 GHMP kinase family protein similar to phosphomevalonate kinase [Hevea brasiliensis] (GB:AAL18926.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Phosphomevalonate kinase Erg8; (InterPro:IPR005916); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.0518495253511819 0.476324666051938 0.643264058993102 1 -0.496497705181638 19.4660945822729 0.0518495253511819 0.119879599228725
AT3G19910_at 8.97386365289863 9.10387231906591 8.94311138955458 8.97090460071976 9.41831837170408 9.21847651387114 8.30729533942098 8.5885157373936 8.85346111253086 8.636852548637 8.39205449094588 8.35910062500212 8.33956027232126 8.63422578786893 8.02681771010594 8.59569484686026 8.15796761323594 8.26472121595881 8.474961821128 0.147471643990454 0.146679347063300 0.149803806108047 0.143388789513034 0.143167722655494 0.147362772268280 0.145985545074389 0.143444782479124 0.151557268785499 0.145735968410512 0.143517958938620 0.144458306183881 0.144734365881386 0.13876647820203 0.146610324681214 0.13876647820203 0.157303999350345 0.143688810868638 0.146291242794652 3 3|0 +|/ 6927196 6929304 6928220.375 6926314 6929573 + gene protein_coding_gene FALSE TRUE AT3G19910.1 zinc finger (C3HC4-type RING finger) family protein similar to BB (BIG BROTHER), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G63530.2); similar to Os09g0535100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063778.1); similar to hypothetical protein [Cicer arietinum] (GB:CAC10211.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0427459748115271 0.475807721007917 0.64362070325816 1 -0.496741505230265 17.4412245644383 0.0427459748115271 0.0639825935964872
AT3G26230_at 8.10041296420961 8.73752406049382 8.93363377197647 8.75940270252805 8.87132967707544 8.06349240222113 8.40396780212876 8.1803960996196 8.19777958007084 7.84055814453502 7.19336169540187 7.28706751541949 7.56717728299188 7.60911408265892 6.5311687075406 8.44163929961139 7.70846266432273 7.35777369516191 7.64619825479947 0.175387682757418 0.178581384635624 0.181851614065965 0.179044840460799 0.177351212378150 0.18406328936992 0.17740612034515 0.187364212420062 0.183911276214518 0.177070597125832 0.179306186687315 0.177405011068298 0.176288106432463 0.182878740234584 0.186042701517984 0.178871995257235 0.201759178355958 0.187285668042587 0.177371120442936 3 3 - 9599479 9599962 9599684.182 9599242 9601196 - gene protein_coding_gene FALSE TRUE AT3G26230.1 CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B24 (EC 1.14.-.-) (CYP71B24) [Arabidopsis Thaliana] (GB:Q9LTL8); similar to CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26280.1); similar to CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26270.1); similar to CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26220.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0657426508712604 -0.475649053792255 0.64373018778667 1 -0.496816284606635 16.1846779072101 -0.0657426508712604 0.184678792158151
AT1G73360_at 2.00671034044809 2.08186634915094 1.76514720837521 1.64171984509526 1.70155533921943 1.62503950280459 1.90512849419267 1.96803109563745 1.90087290940103 2.19065205075350 2.33551299173136 2.0479986693291 2.13056666779262 1.89244733007042 2.71728671791107 2.38505499947352 2.49701001087969 2.32029090635860 1.62276280402622 0.226873162067322 0.230196168626921 0.226873162067322 0.228789102844527 0.239580142976007 0.23073228520148 0.243288338595395 0.233732179501106 0.235912328197253 0.235546364736644 0.23477958566943 0.228228264065112 0.232074387278838 0.233822231575672 0.228237744624140 0.227864112901092 0.248190562848238 0.234099422831986 0.237572124297282 1 1|0 -|/ 27582556 27583284 27582874.444 27582357 27586182 - gene protein_coding_gene FALSE TRUE AT1G73360.1 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to HDG12 (HOMEODOMAIN GLABROUS12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G17920.1); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to baby boom interacting protein 1A [Brassica napus] (GB:ABA54874.1); similar to baby boom interacting protein 1B [Brassica napus] (GB:ABA70759.1); similar to homeodomain protein HOX3 [Gossypium hirsutum] (GB:AAU12247.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.0394699263246908 0.475024038195459 0.644161550858582 1 -0.497110620533389 3.93466658424223 0.0394699263246908 0.0303187376152410
AT1G31420_at 9.31517503301767 9.248224204344 9.4148828407471 9.294671760452 9.74025929804758 9.42098280425557 10.0003260160801 9.970731170387 9.98842919557319 9.84141521297624 10.4157908193047 9.95500406195475 10.2040311441581 10.0506261871964 10.1462896947961 9.80298986563368 9.5999492392902 9.97400991393503 9.98148128821044 0.0871624976133518 0.0875688332757728 0.0896637178992079 0.0856974428413634 0.085971465899203 0.0910145748750347 0.084295450853743 0.08507351090946 0.0880668862173616 0.086861816401646 0.0868704700343581 0.085584115762615 0.0836550970539246 0.089196143824412 0.084920511374873 0.0860519953734024 0.0853784164432853 0.0842668199110604 0.0898376906160573 1 1|0 +|/ 11252750 11253457 11253178.6 11249599 11253860 + gene protein_coding_gene FALSE TRUE AT1G31420.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G35620.1); similar to Os03g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049659.1); similar to Os12g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067376.1); similar to SERK1 protein [Zea mays] (GB:CAC37638.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0422185649423079 -0.474803178003985 0.644314013314704 1 -0.497214540775789 19.5285041066015 -0.0422185649423079 0.0603825520240862
AT1G77830_at 1.64694549458252 1.76419945207569 1.72832654131658 2.06440051669054 1.55812334758961 2.04039117477919 1.65216761620872 1.80583048546442 2.02648633268693 1.97696017966007 1.67536793517862 1.70910456308096 1.85491811181188 1.92741899462125 1.86545227791403 1.46471981490497 1.31379311963991 2.17555935700694 1.92859902348213 0.240174437384681 0.239838497920790 0.250942755812067 0.240296789774328 0.23854137231763 0.236865263291627 0.240225187194408 0.244227493939497 0.240760888827461 0.243530787060126 0.239164745052395 0.247626141420888 0.236865263291627 0.246837570844786 0.237951166344207 0.239856335131333 0.250293633587583 0.245209306742027 0.240133158667041 1 1|0 -|/ 29272128 29272620 29272389.8 29272054 29272646 - gene protein_coding_gene FALSE TRUE AT1G77830.1 zinc finger (C3HC4-type RING finger) family protein contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0492660535810398 -0.474472356194459 0.644542415598675 1 -0.49737011423743 3.64536822044484 -0.0492660535810398 0.107082772368231
AT1G26310_at 0.909876244663025 0.49059310208302 1.24457497992908 1.19455034375844 0.9255483055891 1.15110182336884 1.03849011365907 0.598211757938105 1.50067067648563 0.763044147448374 1.09042100882697 0.678255625304549 0.717198705070321 0.557062229563989 1.15540308383546 1.11518660675266 1.46928462855837 1.45842573003834 1.63443145126174 0.199045856963384 0.190404254251485 0.192274474143027 0.191954954222510 0.194090373658049 0.19679381511065 0.190145169996207 0.198583811936811 0.192042397248199 0.19985309114594 0.191361114745822 0.193485904202316 0.192770953987433 0.190145169996207 0.198009101191350 0.192938124780338 0.190145169996207 0.203686002473434 0.190145169996207 1 1|0 -|/ 9100321 9102204 9101235.7 9100140 9103590 - gene protein_coding_gene FALSE TRUE AT1G26310.1 CAL (CAULIFLOWER); DNA binding / transcription factor Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants. Identical to Transcription factor CAULIFLOWER (Agamous-like MADS-box protein AGL10) (CAL) [Arabidopsis Thaliana] (GB:Q9SBH2;GB:Q9SBH3;GB:Q9SBH4;GB:Q9SBH5;GB:Q9SBH6); similar to AP1 (APETALA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G69120.1); similar to amino acid feature: K-box, bp 283..480; amino acid feature: MADS box; codes for a putative DNA-binding domain, bp 3 .. 171 (GB:AAA64789.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.0502118345437370 0.473967088096584 0.644891331153081 1 -0.497607523268049 2.10888673086146 0.0502118345437370 0.112554763689492
AT4G01575_at 1.62974810533366 2.08785663591795 1.62681976693406 1.87355134535219 1.69074620617723 1.82366310507843 1.94641304207179 1.92225428332822 1.79688004470567 2.24788203940438 1.90673705969037 1.96933061616531 2.07361993670435 2.15178319246791 2.11294143755522 2.16601835393663 2.03082067933837 2.43999691508455 2.12655506163548 0.212897261016812 0.203777230936726 0.202857614137197 0.215142344298411 0.209067854911169 0.207193682873743 0.210029886701639 0.20943937778702 0.218380294419053 0.202857614137197 0.203237209499511 0.203665837780541 0.206357214188440 0.205011595297618 0.212340382976128 0.205353625643616 0.214362846204498 0.20381124743282 0.217139413284058 4 4 - 682059 682432 682259.273 681862 682601 - gene protein_coding_gene FALSE TRUE AT4G01575.1 serine protease inhibitor, Kazal-type family protein similar to serine protease inhibitor, Kazal-type family protein [Arabidopsis thaliana] (TAIR:AT3G61980.1); similar to Os01g0811200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044589.1); contains InterPro domain Proteinase inhibitor I1, Kazal; (InterPro:IPR002350) -0.0467863010790482 -0.473880975346189 0.644950805686646 1 -0.497647960713486 3.90688743083236 -0.0467863010790482 0.0930304346486761
AT2G31760_at 0.757396096925314 0.984091467425059 0.75443361127257 0.71108244218537 0.89717243646937 0.954117410265498 0.982036156094876 0.735013855356249 1.20730350826746 0.436032343684944 1.00080821064392 1.20562764124980 0.96631979083995 1.04221510462394 0.767782128487852 0.956407686375473 1.38874861388999 1.00056995728271 1.12153399284129 0.172415703408666 0.173163659477402 0.173731186542756 0.176790498959558 0.177180742986413 0.176897776183411 0.176243696161803 0.174262034225349 0.174806636442750 0.176541724916530 0.172415703408666 0.175617968478086 0.178360359335152 0.182692774050295 0.176325118339764 0.172415703408666 0.173734923104617 0.175641546863466 0.178141007565081 2 2 + 13516623 13517443 13516976 13515570 13517467 + gene protein_coding_gene FALSE TRUE AT2G31760.1 zinc finger protein-related similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G31780.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G05890.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G31770.1); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0420018455870680 0.473757726585741 0.645035933051858 1 -0.497705824525291 1.82825952113534 0.0420018455870680 0.0593284447451230
AT1G30750_at 0.00807071878693411 0.310777099549155 0.848801922113623 0.511609300455271 0.295210480070069 0.475947070523647 0.390634516458361 0.403394471417694 0.675882605983121 0.505261390424802 0.166146379870526 0.451064135917879 0.393230061138091 -0.0235772355439443 0.383136542297336 0.0207495767320613 0.537126576665026 0.851607971407623 0.8974855303489 0.208920401717838 0.207717998882791 0.205016984387307 0.213975013106702 0.205056079471305 0.208046161030230 0.213144759082129 0.207046310194429 0.212561306131759 0.210455392436024 0.20843998748096 0.207568994452319 0.21657717805738 0.215501753955239 0.212878429281956 0.204346605849134 0.213709861071570 0.213145983807601 0.212645169523141 1 1 - 10905041 10905603 10905288.909 10904889 10905691 - gene protein_coding_gene FALSE TRUE AT1G30750.1 similar to Hypothetical protein CBG24759 [Caenorhabditis briggsae] (GB:CAE56916.1); contains InterPro domain Protein of unknown function DUF1720; (InterPro:IPR013182) -0.0453840080603748 -0.473469574015417 0.645234979486707 1 -0.49784105251066 0.925711702411602 -0.0453840080603748 0.0844532555201728
AT3G16730_at 3.00051236896845 2.87906744807785 2.86065293997442 2.91419541215985 3.04328427618282 3.12690328687886 2.15349638353586 2.64703287416235 2.29520745480747 2.61089509214524 1.96830786857333 2.30792462598306 2.56432811807636 2.02091735205811 1.98433629881269 2.48019249607051 2.5437764913896 2.42796953532918 2.62711656335797 0.213720644775387 0.217526822977199 0.214088926678014 0.216881898424397 0.222733265348896 0.222197084493293 0.208112587682874 0.215514842870760 0.214411198911598 0.208112587682874 0.218808023108050 0.211580421834861 0.218908853703938 0.216721343794889 0.214203513611840 0.208112587682874 0.220436843070552 0.232555006889859 0.218099991819173 3 0|3 /|- 5695684 5696150 5695900 5695418 5699173 - gene protein_coding_gene FALSE TRUE AT3G16730.1 similar to Os07g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059789.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83719.1); contains InterPro domain Protein of unknown function DUF1032; (InterPro:IPR009378) 0.0461888858146217 0.473425024569636 0.645265755390258 1 -0.497861952229076 5.22728919127097 0.0461888858146217 0.0896192731808307
AT1G32290_at 5.68161198299242 5.75645029986727 6.26460216110196 6.02971584606407 6.00248865334446 5.72970806818738 6.02243361558351 5.80176582655441 6.99731869277087 6.74847263090591 6.56688499372635 6.25864354611627 6.29074566108032 6.49427666209766 6.59670119711017 6.74360165675658 6.66809723556276 6.80769914496485 6.22412162497962 0.145004481466741 0.147965442131925 0.143128932438485 0.147218622359489 0.158016212385943 0.151645621087039 0.155692733472441 0.148117745277522 0.153191408770412 0.149108417776007 0.143128932438485 0.150799337651347 0.161270648672329 0.155617420369224 0.150159711520703 0.149505166930480 0.155232277405668 0.146126069461312 0.149309499849840 1 1|0 -|/ 11650216 11650519 11650381.4 11650202 11650547 - gene protein_coding_gene FALSE TRUE AT1G32290.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G42635.1) 0.0438784317749019 0.473417407549014 0.645271017493635 1 -0.497865525454135 12.5160815125764 0.0438784317749019 0.0742071384304757
AT1G20480_at 1.85042769166292 1.9904366190196 1.93336174896140 1.72881526945815 1.35472904428670 1.90669322979167 1.40473780592681 1.83059889741709 2.08473602180530 2.40411236039970 1.89349616723622 1.89139520269816 2.25010063803544 2.14782311498468 2.20355484905908 2.31176852552505 2.53817928811847 2.3711221900511 2.31788767258182 0.205002494451490 0.200977764745784 0.192747417163398 0.197270920340547 0.203020561226498 0.199645115602447 0.199512122174918 0.200049984250271 0.196579661940486 0.192747417163398 0.198663432578625 0.192886243000499 0.192747417163398 0.197499765011421 0.203026100674928 0.194054158166091 0.210244998166936 0.202914483082317 0.194100437230009 1 1|0 -|/ 7094978 7095941 7095460.556 7094823 7097104 - gene protein_coding_gene FALSE TRUE AT1G20480.1 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22700.1); similar to Os03g0132000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048867.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.0530662258404381 -0.472879276849466 0.645642828306903 1 -0.498117829060479 3.98489604592844 -0.0530662258404381 0.128044535439124
AT4G24680_at 8.07369924598706 8.06973757436029 7.96805989766242 8.2589000108093 8.35088822545183 8.21634406962864 7.94257812154998 8.02010617960466 8.38100707045418 8.14164974900104 8.10425249553139 8.18865494797244 7.832756078056 7.7999304626009 8.04005645658992 7.89408711833675 8.15534957808105 7.86170646926371 8.19712510857475 0.153994887461528 0.150054951634027 0.152447305363862 0.150352609636569 0.147449669704363 0.157251776789505 0.148830232267592 0.149081405457421 0.151050788727182 0.147078136044048 0.150138276041434 0.149073856082171 0.146105456962957 0.167424856361458 0.150740751629533 0.153490121364329 0.151906590413911 0.152582831397838 0.149614015936436 4 4 + 12739151 12739715 12739437.091 12733435 12740061 + gene protein_coding_gene FALSE TRUE AT4G24680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98985.2) -0.0416551690133762 -0.472775567809699 0.645714495664955 1 -0.498166421688558 16.2248024207054 -0.0416551690133762 0.0570598770152124
AT2G13270_at 0.449962124158282 0.238901428060550 0.306111958309735 0.510303571288542 0.631025936062309 0.528706390101331 0.374265277401434 0.632091718056847 0.409356107767642 0.393578091257378 0.393737565965885 0.357770753655039 -0.110898302671845 0.293490201570273 0.169764817572202 0.505215619932162 0.654447172865824 0.230748739078909 0.0837896398573734 0.184013947421161 0.180058438612455 0.185160362069182 0.184712874771049 0.180058438612455 0.184419758986365 0.186874984954352 0.184483525389628 0.186244102495529 0.196352658876749 0.181793314457314 0.185851598347897 0.196956379866037 0.198651527931858 0.185517968002771 0.186035513241415 0.189780612441463 0.184248929421104 0.190881485614499 2 2|0 +|/ 5500293 5500832 5500549.2 5499735 5500937 + gene protein_coding_gene FALSE TRUE AT2G13270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G42120.1) 0.0432208925282296 0.472631536914 0.645814033377108 1 -0.498233890112443 0.762600642408306 0.0432208925282296 0.0699073576912825
AT3G59340_at 0.419103396890881 0.61312905379534 0.723152839033746 0.446613478714147 0.863863218738682 0.424658552497259 0.657373526648656 0.536613066755541 0.0311994888907446 0.814774962253742 0.443475643165172 0.398784701011616 0.315072386214243 0.361664945449048 0.492637460303872 0.765504282970038 0.817003705692186 0.52369580335862 0.587234417199219 0.199092000516159 0.203126088859847 0.200308466313527 0.205858002903162 0.200100285731251 0.207621703850616 0.201823054766282 0.21082300161489 0.214540741135141 0.206118528552722 0.202571903240843 0.199092000516159 0.208110808277382 0.203868474119437 0.200003665295103 0.199092000516159 0.210110386349879 0.205070815199908 0.202860826530657 3 3|0 -|/ 21939951 21941111 21940536.75 21939741 21942547 - gene protein_coding_gene FALSE TRUE AT3G59340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59310.1); similar to Os05g0299500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055130.1); similar to Os08g0540000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062380.1); similar to anthocyanin-related membrane protein 1 (Anm1)-like [Oryza sativa (japonica cultivar-group)] (GB:BAD34418.1); contains InterPro domain Protein of unknown function DUF914, eukaryotic; (InterPro:IPR009262) 0.0475054188980259 0.47254055963362 0.645876910223265 1 -0.498276496483818 1.08179646936853 0.0475054188980259 0.0981395120631276
AT3G24650_at 1.65655988965253 0.867281361158852 1.05445162230258 1.11991155044302 1.09973832238089 1.51488718046578 1.51340269335026 1.54516948324181 1.68828642212713 1.12555446615829 1.84505491999320 1.51718340621958 1.42217625533823 1.53507138876505 1.36921939214150 1.25924846073727 1.83855665251320 1.92197462162421 1.70834237507799 0.214610461749304 0.20826737267734 0.209107719681308 0.215685737554838 0.217972246876415 0.213130871271927 0.210215562409458 0.208492130924752 0.218722891642268 0.218639309514048 0.209742302246897 0.220883000794069 0.2179601607121 0.21829230081587 0.213479691807256 0.208944438338002 0.208862664960359 0.226411692775686 0.21203894142137 3 3|0 +|/ 8999495 9000758 9000033.125 8997377 9001070 + gene protein_coding_gene FALSE TRUE AT3G24650.1 ABI3 (ABA INSENSITIVE 3); DNA binding / transcription factor/ transcriptional activator Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. Identical to Abscisic acid-insensitive protein 3 (ABI3) [Arabidopsis Thaliana] (GB:Q01593); similar to FUS3 (FUSCA 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G26790.1); similar to ABI3 [Populus trichocarpa] (GB:CAA05921.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.0585949859537006 -0.472478215381325 0.645919999683468 1 -0.498305688937978 2.84440279201830 -0.0585949859537006 0.154843149485792
AT1G04230_at 5.68920408738235 5.61222691702779 5.27013171202749 5.95898554436748 5.96751459761151 6.03951688477242 5.54801018900592 5.42014938636727 4.75622927661738 4.83327592868627 4.58407260289676 4.436031583024 4.40910953931629 4.15872139820253 4.69696471373635 4.57981434028012 5.31602985901911 4.94764274086578 4.74686827151964 0.256594696842581 0.246491091656623 0.246491091656623 0.257791754043192 0.250860171393134 0.254634089900219 0.250838755469603 0.246491091656623 0.264601522860980 0.246491091656623 0.247125732056359 0.250723077856645 0.247889449074395 0.246491091656623 0.253372941254499 0.248308493598405 0.256783728771335 0.246491091656623 0.250138081940347 1 0|1 /|+ 1126630 1127568 1127303.556 1125517 1128167 + gene protein_coding_gene FALSE TRUE AT1G04230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43720.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54460.1); similar to Os03g0797700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051564.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.0519483639877054 0.472405643137932 0.645970159968017 1 -0.498339665967285 10.3981371678746 0.0519483639877054 0.122609907273606
AT2G44870_at 9.55746829674404 9.74214480776626 9.72303064632834 9.81438468108115 10.2419675435418 9.81511404238112 10.2452499031206 10.3218966134763 10.0300158847889 9.78360951762227 9.99530416705206 10.0119510514564 10.0505466942534 9.9902826460517 10.0293037818268 10.2065774225241 9.86905661985321 9.84234605024347 9.71021822859797 0.110942563665095 0.110405995876533 0.117869947473062 0.114245945518539 0.111328263529368 0.120294842811875 0.114754732360448 0.111646345172467 0.108885715482475 0.116520979115462 0.108470937476830 0.108470937476830 0.109964389572727 0.115829188279368 0.113535250537713 0.108470937476830 0.120715348057903 0.108470937476830 0.109141733754133 2 2|0 +|/ 18510542 18511452 18510947.1 18510213 18511756 + gene protein_coding_gene FALSE TRUE AT2G44870.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAL86463.1); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) 0.0450370834387863 0.47201257203059 0.646241873747178 1 -0.498523608066529 19.8530081990520 0.0450370834387863 0.083089598274126
AT1G22940_at 5.72042914907956 5.02878630391148 4.59424313291439 4.68896178998075 4.972684362088 4.59498524104776 5.28003135665404 4.97627033935264 5.09764029635373 4.22582440393457 4.86622800981578 4.91295871778248 5.40053993710054 5.29638112356227 5.1911737277616 5.42711604067069 4.66320411050348 4.45938214825003 4.48315534441085 0.209618308702031 0.205618685288802 0.205618685288802 0.205618685288802 0.211876687680930 0.215446950034353 0.209865614126568 0.206159113578283 0.205618685288802 0.205618685288802 0.205618685288802 0.209257675730608 0.205618685288802 0.206252372560588 0.20924754914665 0.215582420391224 0.219898022194058 0.206918891766127 0.210556369850585 1 1 + 8124211 8124808 8124530.7 8122340 8125057 + gene protein_coding_gene FALSE TRUE AT1G22940.1 TH1 (THIAMINE REQUIRING 1); phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase Thiamine requiring 1 similar to BTH1 [Brassica napus] (GB:AAC31298.1); similar to phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase [Zea mays] (GB:CAJ45026.1); similar to Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase [Medicago truncatula] (GB:ABE87727.1); contains InterPro domain Phosphomethylpyrimidine kinase type-2; (InterPro:IPR004399); contains InterPro domain Phosphomethylpyrimidine kinase type-1; (InterPro:IPR013749); contains InterPro domain Thiamine monophosphate synthase; (InterPro:IPR003733) -0.0568721801886124 -0.472010700802084 0.646243167378996 1 -0.498524483378805 9.7967137886272 -0.0568721801886124 0.147072930071370
AT3G62010_at 9.69055577662337 9.83413641021824 9.67439629984692 9.77012871086535 9.97593626237485 9.74385278570079 9.64845642263798 9.54171018336218 9.75033714109816 9.59007667367717 9.57712354607151 9.52506715929302 9.58697364807497 9.65239186428547 9.35893154309437 9.81848237912746 9.670282283983 9.6608617010943 9.56847145525664 0.0916520653368342 0.0808204143475538 0.088668283323039 0.0886664016471483 0.0813043022198075 0.0894936308245007 0.0823158726978708 0.0831924022115611 0.095178112864987 0.0810420578906263 0.0862351139907617 0.0828763518014599 0.0847413913666188 0.0863481212240972 0.0854136872877551 0.0834265702473307 0.0885605559136319 0.0882045926303524 0.087581425480739 3 3|0 +|/ 22981274 22981991 22981541.889 22975652 22982359 + gene protein_coding_gene FALSE TRUE AT3G62010.1 metal ion binding / oxidoreductase similar to Os03g0586700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050571.1); similar to hypothetical protein CC1G_07102 [Coprinopsis cinerea okayama7#130] (GB:EAU85408.1); contains InterPro domain [2Fe-2S]-binding; (InterPro:IPR002888) 0.041166496051944 0.471828096773143 0.646369412455399 1 -0.498609884845881 19.3561762842730 0.041166496051944 0.0533495820378336
AT1G10680_at 1.97551556049081 1.78404682945121 1.59933887215159 1.81471365079900 1.58441670914494 1.98107614637623 1.50957821171805 1.58555036232151 1.63815162855706 2.23836107528414 2.22527650708052 1.9157406176887 2.06298979900942 2.01447370319183 2.03150391366770 1.57273658476120 2.11077478470227 2.17078827659191 2.52831938953240 0.215981484187101 0.212229299580367 0.207991296236948 0.215098288782274 0.208303267542133 0.208050667725203 0.213202796887204 0.207635875633420 0.208788037622287 0.209739917176162 0.222095876901088 0.206943092409354 0.211205300461882 0.211395220560986 0.207951057441666 0.205778471624407 0.210543065486939 0.208119856170589 0.211738420329543 1 1 - 3538504 3539298 3538894.091 3538471 3543783 - gene protein_coding_gene FALSE TRUE AT1G10680.1 PGP10 (P-GLYCOPROTEIN 10); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 10 (P-glycoprotein 10) (MDR10) [Arabidopsis Thaliana] (GB:Q9SGY1); similar to PGP2 (P-GLYCOPROTEIN 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G25960.1); similar to PGP13 (P-GLYCOPROTEIN 13), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G27940.1); similar to ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19), ATPase, coupled to transmembrane movement of substances / auxin efflux transporter [Arabidopsis thaliana] (TAIR:AT3G28860.1); similar to H0423H10.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09461.2); similar to P-glycoprotein [Gossypium hirsutum] (GB:AAF23176.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59582.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0453474520826477 -0.470837367643607 0.647054565499736 1 -0.499072684377817 3.80326932003728 -0.0453474520826477 0.0858597154207078
AT3G66652_at 2.88981878501314 2.90994476479815 3.10938318357096 2.94798599824501 2.91865814857163 2.94989221817895 3.08861795669666 3.35285158247405 3.12519671968681 3.20453956342552 2.99400162397941 3.01351380357880 3.24062251792313 2.77510113190113 3.08135219449567 3.23849296701061 3.57278688210689 3.1953946429009 3.09730646400674 0.162546252513898 0.170280523498918 0.167888362266551 0.172069164309817 0.167140274394048 0.163154826549103 0.174445397605869 0.163060794814159 0.164668999656662 0.174242917663328 0.162546252513898 0.167189915798228 0.169805420437019 0.162546252513898 0.168149641516844 0.162546252513898 0.17121450518863 0.176383991347835 0.162546252513898 3 3|0 +|/ 2086678 2087500 2087044.889 2084036 2087562 + gene protein_coding_gene FALSE TRUE AT3G66652.1 fip1 motif-containing protein similar to ATFIP1[V] (ARABIDOPSIS HOMOLOG OF YEAST FIP1 [V]), RNA binding [Arabidopsis thaliana] (TAIR:AT5G58040.1); similar to Fip1 motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95555.1); contains InterPro domain Fip1; (InterPro:IPR007854) -0.0411338734949090 -0.470702075308897 0.647148155427899 1 -0.499135811265764 6.16152198112361 -0.0411338734949090 0.0539667251303017
AT1G52540_at 4.44487116382418 4.38405041448199 4.409736253189 4.46746029730493 4.84113582917515 4.45232623005532 5.17287237952675 5.03276449995894 4.34068059153307 4.67819702465993 5.08541866765425 4.75187495812291 4.92004928327433 4.95597188564665 4.02783177012521 5.32792053040426 4.78363724154924 4.91761370554802 4.6114720492366 0.179834250768924 0.187866664154529 0.182788593995018 0.187715506438776 0.179834250768924 0.193527425275367 0.185891085166491 0.192898342520455 0.184511907129084 0.184020017121393 0.179834250768924 0.189972795545094 0.186229052217520 0.189096984300354 0.192734421862769 0.183857414852614 0.188558560391826 0.183247554946752 0.19076201063219 1 0|1 /|- 19574039 19574524 19574347.1 19573727 19575873 - gene protein_coding_gene FALSE TRUE AT1G52540.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G15890.1); similar to Os02g0186500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046121.1); similar to putative receptor protein kinase PERK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD67605.1); similar to Os06g0166900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056916.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.0434324523986056 0.470430314039017 0.64733616848218 1 -0.499262561567017 9.3455219553231 0.0434324523986056 0.0729778618989626
AT4G22430_at 1.37608522643269 1.46163453766995 1.19788361311881 1.44831382505129 1.16074824598449 1.4852601799756 0.863217326331643 1.62018286814024 1.17133624522127 1.67969157449313 1.54828027572595 1.34378205390108 1.42623596818136 1.45453645979906 1.31059909902794 1.34408830440682 1.49126345142251 1.16948961524834 0.942022123043605 0.222080237754106 0.216307159741383 0.225776556544812 0.218581075426069 0.223177204805513 0.219533558708448 0.217769680721043 0.216307159741383 0.229556854324997 0.221046423657344 0.219367943015620 0.216982702973947 0.216307159741383 0.220458356131439 0.216307159741383 0.216307159741383 0.226762960781796 0.2181291571473 0.219799497470260 4 4 + 11828356 11828828 11828587.818 11827786 11828917 + gene protein_coding_gene FALSE TRUE AT4G22430.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G26010.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.0572279494668577 0.470336982037162 0.647400744452105 1 -0.499306075739117 2.65185792002982 0.0572279494668577 0.149703667608385
AT3G49660_at 2.62389218235581 2.85458213932108 2.47394960053831 2.85007320644000 2.70205269871472 2.76301921102957 2.98602128820882 2.76790666610763 1.83451629560106 2.53017790459904 2.15716740292197 2.38631643412318 2.51202415662314 2.41754670070671 2.64381594138405 2.57122419958954 2.08854580057311 1.98757813938943 2.61103075477416 0.222716251028215 0.223245521481795 0.220554440564737 0.227680020986000 0.227062512764671 0.234079870433429 0.229395675285987 0.242278987857917 0.234314988109293 0.223838841444674 0.228907362788380 0.220554440564737 0.220554440564737 0.227600979628959 0.223872858656233 0.225041415824931 0.23712215769272 0.222610732115624 0.224383295447851 3 3 + 18425087 18426157 18425705.182 18424598 18426564 + gene protein_coding_gene FALSE TRUE AT3G49660.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to Os03g0725400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051130.1); similar to Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 (GB:2G9A); similar to Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 (GB:2G99); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632) -0.0452705972809370 -0.470089418529513 0.647572047164433 1 -0.499421457219324 5.08807162337548 -0.0452705972809370 0.085828436283223
AT1G01410_at 0.902110118233683 0.876309088353661 0.69056765377302 0.95754782704821 0.754896810423183 0.82057382526752 0.694597520481865 0.90524470423032 0.582757550413284 1.15354823493778 1.26107435485801 1.09871839422694 0.7501754511116 1.08180453408626 0.629903452300447 0.7169261676152 1.01014803821819 0.961836572544727 1.21474453620141 0.185586901832663 0.182973763143896 0.192495375605816 0.183776455669927 0.184550234595162 0.193695739083372 0.183292658020418 0.181490155947475 0.20011036081978 0.181490155947475 0.184550372994488 0.190968205153750 0.188238671405736 0.187880507053377 0.185749795224447 0.185412215721356 0.191002509337073 0.182100212114795 0.185512973749143 1 1 + 153706 154128 153895.091 153113 154198 + gene protein_coding_gene FALSE TRUE AT1G01410.1 APUM22 (ARABIDOPSIS PUMILIO 22); RNA binding / binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G64490.1); similar to pumilio protein 3 [Trypanosoma cruzi] (GB:AAQ84132.1); similar to pumilio/PUF RNA binding protein 3 [Trypanosoma cruzi strain CL Brener] (GB:XP_806089.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) -0.0417644492971088 -0.470061629172796 0.647591277470203 1 -0.499434405324918 1.78648434904526 -0.0417644492971088 0.0601050045189321
AT1G33890_at 1.73514375327263 1.57476480613796 1.82450386718345 1.57235394147025 1.78495578185142 1.82260706050793 1.72669671981249 1.87886496885556 2.27346590743205 1.90610021697301 1.95782667057288 2.30186573855682 1.95228301942169 2.08018070743468 2.1834207394992 2.08273552153293 2.13629678752278 2.27352392485144 2.00113055144189 0.186443061315243 0.191656611612630 0.186714515972067 0.192430088532345 0.183167745362669 0.183943137469712 0.187815255738435 0.183167745362669 0.188166410135998 0.187119780831255 0.188336947984620 0.189705471993298 0.189311470807462 0.192239072147680 0.185741334444560 0.190679670339506 0.199613609777686 0.194749395628686 0.187240091417931 1 0|1 /|- 12308270 12308926 12308523.2 12308264 12309666 - gene protein_coding_gene FALSE TRUE AT1G33890.1 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative similar to avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative [Arabidopsis thaliana] (TAIR:AT1G33900.1); similar to GTP binding protein [Brassica rapa] (GB:ABK78687.1); contains InterPro domain AIG1; (InterPro:IPR006703) 0.0415110070626686 0.469425803574391 0.648031343825763 1 -0.499730460176897 3.83061079436464 0.0415110070626686 0.0583976255449974
AT4G28990_at 5.05687338552574 4.67499875699374 4.55420039091373 4.74443903694001 4.09868079106091 4.5595699448033 4.2725279331609 4.49669358637701 4.98164429164846 4.70512268173025 4.95547274286091 4.79235601605183 4.38186849304788 4.43862423714801 4.80267625552632 4.66940851613724 4.90341695688138 4.27322060575976 4.1629282344122 0.21664894117859 0.214860424841456 0.215389057658564 0.209767100545742 0.212446878215728 0.214328970117720 0.209767100545742 0.209767100545742 0.212828467239924 0.209767100545742 0.216356551722950 0.209767100545742 0.212865287213166 0.213701878565408 0.213325056897184 0.211115608542971 0.215015392348106 0.211349655060888 0.212092844366974 4 4 + 14292484 14292934 14292743.091 14291157 14293180 + gene protein_coding_gene FALSE TRUE AT4G28990.1 RNA-binding protein-related similar to splicing factor PWI domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G29210.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE93218.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -0.0502427329609141 -0.469297621861568 0.648120077732653 1 -0.499790098029733 9.19159575181707 -0.0502427329609141 0.115401386298495
AT4G13210_at 0.873263388729269 1.12812998584139 0.849874387946822 1.16530966514616 1.09865629014250 1.03277226642193 1.17769035043035 0.946301599715546 1.36933497831500 0.853464853220612 1.20531914515707 1.20392682016361 1.2214477011541 1.34107907230383 1.22134983299051 0.914655693509067 1.27675968548828 1.07495443099514 1.07327599923881 0.202766280662138 0.200925392634352 0.198937821162414 0.204297345780291 0.197375743422737 0.197375743422737 0.197396234698455 0.199843502349877 0.212121190529994 0.209135293945178 0.198771351861729 0.201920526417188 0.206735117585098 0.202980843683811 0.215509669509236 0.197375743422737 0.208058802900839 0.198480044884636 0.201495663891416 4 4|0 +|/ 7671878 7673106 7672644.6 7670036 7673131 + gene protein_coding_gene FALSE TRUE AT4G13210.1 pectate lyase family protein Identical to Putative pectate lyase 14 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9SVQ6); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.0445257126819708 0.468981769774826 0.648338751006066 1 -0.499936984891726 2.17456398745258 0.0445257126819708 0.081599972747033
AT1G52250_at 1.28109143433246 1.48270835925343 0.938004343577202 1.29537889097986 1.46501497758579 1.45639724408443 1.02106106406554 1.39399543840098 1.64657866632911 1.13596814650569 1.62160117441634 1.39009972658449 1.54607105330812 1.47292380526946 1.61456286723493 1.45488307753911 1.54139527582903 1.08490974083453 1.31623080560942 0.219084716391985 0.221590775002242 0.220685227120783 0.230031188172922 0.219084716391985 0.219084716391985 0.219951655344828 0.223121144950887 0.223736370434392 0.224115488657229 0.226098658377757 0.223640785341692 0.221515877858515 0.219318362667243 0.219084716391985 0.21975762447165 0.220330970695835 0.223852074705983 0.220087912084433 1 1 - 19462514 19462853 19462690.909 19462342 19463255 - gene protein_coding_gene FALSE TRUE AT1G52250.1 dynein light chain type 1 family protein similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT3G16120.1); similar to Dynein light chain, type 1 [Medicago truncatula] (GB:ABE93207.1); contains InterPro domain Dynein light chain, type 1; (InterPro:IPR001372) 0.046765712011322 0.46879242278398 0.648469857870663 1 -0.500024995224602 2.7077389921725 0.046765712011322 0.095966615302853
AT3G10210_at 6.54089867488652 6.7187852325489 6.54943776769536 6.62274581192817 7.5326019027938 6.58817088596949 6.44303701707877 6.58170972814218 5.59804481059961 5.68618591957264 5.54715044172378 5.50734630151818 5.23964460438326 6.01485573007195 5.47439586890802 5.80861633690867 5.44442384161356 5.34337410103372 5.74794424440543 0.251109381139412 0.250974796008323 0.249181955842566 0.245202805519338 0.255851719166749 0.260143563757658 0.254582678098387 0.241283321318912 0.277481575778466 0.242188360147802 0.248562259511754 0.245776028358831 0.245866053841548 0.252651695297621 0.248576355239576 0.24340967055 0.267858667603179 0.251147122234741 0.241283321318912 3 3|0 -|/ 3160453 3161429 3160900.1 3160242 3161619 - gene protein_coding_gene FALSE TRUE AT3G10210.1 similar to Rho-GTPase-activating protein-related [Arabidopsis thaliana] (TAIR:AT4G35750.1); similar to Cellular retinaldehyde-binding/triple function, C-terminal [Medicago truncatula] (GB:ABD28324.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.0611078370050986 0.468607898542124 0.648597637371589 1 -0.500110731155919 12.3096071583618 0.0611078370050986 0.168512752016666
AT3G58120_at 3.37224081422879 3.35919827844665 1.41277989303535 1.94962529788715 1.28094561631536 1.96294810580202 1.89078731896227 1.59746667074616 6.56037932163437 3.69841942500993 8.64499760936158 7.94590876564398 7.49228873571758 7.20227205508806 7.98449334939182 6.00900895692609 3.08021800249487 5.2124602687178 6.76702840955342 0.26626367721327 0.256285082682954 0.254924831372296 0.269282543751283 0.260065458615942 0.264321446174367 0.262571101902191 0.253634443774855 0.260299497936547 0.255306791436537 0.259397189041579 0.256988695951084 0.253634443774855 0.269976259022613 0.25895836139439 0.258636229330686 0.262041135820550 0.25749558752132 0.253634443774855 3 3|0 -|/ 21532297 21533637 21533213.222 21531951 21534304 - gene protein_coding_gene FALSE TRUE AT3G58120.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G42380.2); similar to bZIP transcription factor bZIP50 [Glycine max] (GB:ABI34644.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0589158534245757 0.468580868837325 0.648616355917259 1 -0.500123287317182 8.28911484275312 0.0589158534245757 0.158563548561435
AT1G12820_at 9.05517131221497 9.30971731963449 9.1623464586218 9.09530337734597 9.59040852683079 9.39959077105768 9.61637705165694 9.4912047845159 9.09446883304224 9.27187920524565 9.12815117117572 9.29699819181491 9.36053365842682 9.1377949212445 8.77852682274211 9.5029066101064 9.40193490003121 9.04079106722953 9.33281916498963 0.119289130517747 0.110445971151677 0.119068446523529 0.114433424943257 0.110804793972189 0.120032524811451 0.114629020147122 0.114267508030475 0.122460226369866 0.112667959762118 0.110211084054220 0.118731882987435 0.111964509179044 0.123084359184874 0.121205960421582 0.113046326290599 0.118069836115350 0.120390312652028 0.11772005986057 1 1 - 4368924 4369445 4369203.182 4368758 4371291 - gene protein_coding_gene FALSE TRUE AT1G12820.1 AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase similar to GRH1 (GRR1-LIKE PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G03190.1); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G26810.1); similar to auxin-responsive factor TIR1-like protein [Populus tomentosa] (GB:ABG56238.1); similar to Os04g0395600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052659.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93930.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.0416532000604755 -0.468568398163905 0.648624992163341 1 -0.500129080109533 18.5595201513709 -0.0416532000604755 0.0602886180205619
AT1G03050_at 0.860053365134896 0.690158809141901 1.19208981275678 0.73155762778598 1.06913230943325 0.759899821998725 0.870446529983178 0.86328995541759 1.49546865519598 0.98243027007875 1.05044453801584 1.07674648606167 0.761353059745033 0.896121719644115 1.13292678785259 0.747230549527222 1.27122772534669 1.18213637245763 1.20289557058784 0.184262589084759 0.18931549530087 0.190545490468909 0.190953322570146 0.184140839373559 0.184383456865149 0.184140839373559 0.186738934562330 0.189194877299881 0.187237759147280 0.194885043185345 0.191838821679193 0.187075224321746 0.192546891582814 0.184770750245276 0.192317362987642 0.194802262392738 0.192422602887053 0.189873307784015 1 1|0 +|/ 709188 709835 709496.3 707726 710041 + gene protein_coding_gene FALSE TRUE AT1G03050.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related Identical to Putative clathrin assembly protein At1g03050 [Arabidopsis Thaliana] (GB:Q9SA65); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT4G02650.1); similar to putative clathrin assembly protein [Oryza sativa (japonica cultivar-group)] (GB:AAV25008.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.0474876828576083 -0.468545144251501 0.648641096210185 1 -0.500139881464395 2.00043098068264 -0.0474876828576083 0.100406011917923
AT3G49060_at 6.58209594805921 6.90884546825493 6.5970114939725 6.50414962164312 7.330390578474 5.91330185751252 6.32338130679792 6.45215790905287 6.87666265340473 5.92320793125443 6.60133059451064 6.70956820953267 6.32041175443234 6.71237708118108 5.46917327109418 6.72681224397295 6.06630286981796 6.60753974944933 5.9760398392422 0.260702135425406 0.243762651547828 0.249961977848976 0.259049730588092 0.251196039270586 0.269652751565314 0.258532735271679 0.2451663896628 0.261772665142103 0.246634172074232 0.243762651547828 0.256469355737285 0.246493156055290 0.248701119754281 0.248345591662906 0.247676005065031 0.256805694610215 0.259197049150744 0.253739131750579 3 3 - 18198395 18198993 18198696.545 18198199 18202920 - gene protein_coding_gene FALSE TRUE AT3G49060.1 protein kinase family protein / U-box domain-containing protein similar to protein kinase family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45910.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain U box; (InterPro:IPR003613) 0.0813229468205402 0.468528702803789 0.648652482529825 1 -0.50014751814527 12.9065799128289 0.0813229468205402 0.253163798340435
AT2G36940_at 1.72170991479656 1.71638627088802 2.09471741268741 1.83181433894682 1.64675599933406 2.10315787447739 2.04406086802314 2.36252837970359 1.44734190893128 2.21099439893898 1.68449161247186 1.72699804560451 2.56872919498534 1.65020663068679 2.51866790343045 1.69510170476771 1.92911041244281 1.73625919271312 1.74041597925911 0.248144114693449 0.234054561063327 0.236155271075813 0.238187932579688 0.239830995921301 0.233906913798973 0.236515365907596 0.258812643566489 0.243687382867453 0.239684340017667 0.233702988542604 0.237310469009026 0.238255048547340 0.242872107026018 0.257611325628626 0.237073712810662 0.237516975602259 0.234772762844677 0.244912497050229 2 2 - 15518867 15518905 15518891.727 15518865 15519066 - gene protein_coding_gene FALSE TRUE AT2G36940.1 unknown protein 0.0485257697183133 0.468304539221285 0.64880773358878 1 -0.500251611464157 3.80928122378093 0.0485257697183133 0.106519411406658
AT1G04020_at 2.87795237271720 2.62834364293827 3.50034582954007 3.08840329291215 2.06041490234246 2.62949514523217 3.13381968613769 3.28921722243086 3.25261451462332 3.53487982078828 3.27429262684247 4.02097874487280 3.06887790093959 3.43576643731886 4.07977685337652 3.25342806725716 2.92453618282677 3.20928592456949 3.26892136672462 0.200646518187530 0.197219686460466 0.203240039919115 0.203885508492858 0.198798567336292 0.214680821847107 0.20270824366754 0.198559188998345 0.20539961948583 0.196659656020921 0.197971548122273 0.195354960998196 0.199233262606421 0.202379487408051 0.208516201222183 0.19578076832299 0.195354960998196 0.205821554492649 0.197527166605296 1 1 + 1039269 1040012 1039774.727 1036536 1040223 + gene protein_coding_gene FALSE TRUE AT1G04020.1|AT1G04020.2 ATBARD1/BARD1 (BREAST CANCER ASSOCIATED RING 1); transcription coactivator similar to ATBRCA1 (BREAST CANCER SUSCEPTIBILITY1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G21070.1); similar to Os04g0512400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053298.1); similar to OSIGBa0157K09-H0214G12.23 [Oryza sativa (indica cultivar-group)] (GB:CAH68012.1); similar to putative BRCT domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59289.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0532195818387882 -0.467641429581617 0.649267091711118 1 -0.500559255905145 6.28125221659596 -0.0532195818387882 0.131794720024221
AT1G22720_at 1.3971159888086 1.50922565969651 1.65486676649068 1.7899577391586 1.47474242045593 1.43168126775455 1.79198710314922 1.68837082757071 1.57610709509317 1.98118218287617 1.42369200072302 1.38591507452379 2.04566671891111 1.55440644266344 1.74675037772711 1.46608655754537 1.29501103677769 1.7166234507807 1.38936045916351 0.229998412815202 0.228896053542087 0.228808642271547 0.228217633387488 0.231176365359124 0.233161461307869 0.226691545795002 0.226399544025743 0.231984024697044 0.236197043609153 0.229337343565367 0.222765519006860 0.226547001649744 0.222374232492107 0.222374232492107 0.226191213108197 0.226965529125446 0.223445834308552 0.226659845757908 1 1|0 -|/ 8044269 8045465 8044778.667 8044221 8045654 - gene protein_coding_gene FALSE TRUE AT1G22720.1 wall-associated kinase, putative similar to WAK4 (WALL ASSOCIATED KINASE 4), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21210.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881) -0.0392385672978709 -0.467523947414284 0.64934849142617 1 -0.500613717288284 3.20631957321934 -0.0392385672978709 0.036055533099292
AT4G08560_at 1.02647520126535 1.08254514308288 1.15290170728483 1.23989899396519 0.84994385417893 0.794214743895894 0.906816239165105 1.05180406066936 0.81221511797188 0.878738458404287 1.12935041535467 0.821633835583004 1.20519811527698 1.15066090531787 0.884759009296078 0.703332771068853 1.37334717014983 0.928238689251643 1.12600024246749 0.192186206552022 0.189180426256824 0.188337343267921 0.185410454879544 0.189051696145550 0.185410454879544 0.188920514453633 0.194441787327668 0.188180104850952 0.195475023266389 0.189574273815209 0.194258780415222 0.189557249382137 0.186798102387112 0.191086924728230 0.185410454879544 0.193101713343991 0.194587654423866 0.185725318938329 4 0|4 /|+ 5452648 5453135 5452900.889 5450431 5453180 + gene protein_coding_gene FALSE TRUE AT4G08560.1 APUM15 (ARABIDOPSIS PUMILIO 15); RNA binding / binding similar to APUM14 (ARABIDOPSIS PUMILIO 14), RNA binding [Arabidopsis thaliana] (TAIR:AT5G43110.1); similar to Os11g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068151.1); similar to Os12g0488900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066792.1); similar to Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) (ISS) [Ostreococcus tauri] (GB:CAL57619.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313); contains InterPro domain Plant self-incompatibility S1; (InterPro:IPR010264) 0.0389550857083427 0.467285985189615 0.64951338266384 1 -0.500723989635029 1.99484985303523 0.0389550857083427 0.03230127691944
AT1G79890_at 1.62207659968888 1.60228224220803 2.04482177120104 1.83426238624628 1.78618724931617 1.51361565839265 1.70358089004720 1.48200828742047 1.79927993043228 1.9634354877317 1.68504512370491 1.97757291029864 1.68942766267766 1.51947697665139 1.64186155945713 1.45446845123339 2.01952517243331 2.28203720359593 2.42212726796732 0.18970476277136 0.187047676249865 0.193103226830073 0.199942718392075 0.198026846129049 0.193642717906282 0.194037291243379 0.193261541106949 0.186877292416795 0.190169532805431 0.190198129307658 0.186242813089458 0.190990513805520 0.197951720118405 0.194028447336681 0.187548908106948 0.201781400457417 0.194962475777547 0.201833119337734 1 1 + 30056457 30057070 30056744.545 30053548 30057096 + gene protein_coding_gene FALSE TRUE AT1G79890.1 helicase-related similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G79950.1); similar to Os05g0219800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054943.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07552.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain DEXDc2; (InterPro:IPR006554); contains InterPro domain Helicase c2; (InterPro:IPR006555); contains InterPro domain DEAD_2; (InterPro:IPR010614); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain DNA repair helicase Rad3; (InterPro:IPR013020) -0.0428512923779982 -0.46707594563196 0.649658941747607 1 -0.500821277865557 3.62124994117358 -0.0428512923779982 0.0709559494791386
AT3G20720_at 6.57938650248503 6.65183576075161 6.63870293866894 7.12421571965563 6.79928129831708 5.98814410501061 6.65307589492071 6.33689657392277 5.74017870487939 6.25480706179396 5.8506888917042 6.33182072223676 6.03764584307104 6.46079348090741 5.99606786127032 6.38504228680839 5.64128614164935 5.36293637637567 5.90541516739217 0.242732596046269 0.228049044898715 0.233878364056857 0.225445902802552 0.226797879558068 0.233593575952853 0.229147176222652 0.223765750849443 0.247164665561379 0.221822847427666 0.225303494459297 0.226607232689166 0.229991219267063 0.229859382108294 0.222013572797141 0.221870976085874 0.244529479073376 0.246671131683373 0.221822847427666 3 3 + 7246062 7246683 7246458.455 7239914 7247011 + gene protein_coding_gene FALSE TRUE AT3G20720.1 similar to Os04g0628600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053961.1); similar to OSJNBa0089N06.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE04248.3); similar to unnamed protein product; gene_id:MOE17.2 unknown protein [Medicago truncatula] (GB:ABE93163.1); contains domain SUBFAMILY NOT NAMED (PTHR22774:SF4); contains domain UNCHARACTERIZED (PTHR22774) 0.0618861107703783 0.466976062759500 0.649728166736049 1 -0.500867527918986 12.5839851051456 0.0618861107703783 0.172958112602304
AT3G50300_at 2.25035666218281 2.13354241932031 2.19014407938067 2.59442263722421 2.20324742998566 2.31881588364896 1.89971784730164 2.06061846295332 2.74115687204886 2.08924527936855 1.94109338388547 2.34982167305190 1.95916052079141 2.25508703542930 2.37692881563894 2.13917118810341 2.44836627412511 2.00783051425863 2.180520516855 0.223729191383535 0.221412572308359 0.224472184714754 0.224472981293265 0.221151937628134 0.232615347852434 0.219129223059424 0.217041868408368 0.221857628415100 0.216981019341045 0.226545964533781 0.224121054562923 0.231020414645716 0.216981019341045 0.220907539212727 0.230005793266948 0.216981019341045 0.225851625007998 0.216981019341045 3 3 + 18655811 18656279 18656082 18654937 18656388 + gene protein_coding_gene FALSE TRUE AT3G50300.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50280.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.0441534312617011 0.466775771946759 0.649866991031467 1 -0.500960242607284 4.46718650195869 0.0441534312617011 0.0804902887123712
AT4G16970_at 1.87123276463268 1.65702508715276 1.54917794893219 1.91213482219896 1.63545532564124 1.68927952566666 2.17379155922149 1.80554197225819 2.42115485337687 2.48157520723655 2.66725532844043 2.6300946336852 2.09459798950654 2.63993510318976 2.60909685297794 2.45284784149869 2.18015507978689 2.05800480381594 2.08625052970775 0.25398682748702 0.255933588260574 0.260075393911166 0.255942167506545 0.262706085774477 0.270887482312237 0.252482034817162 0.260324091372346 0.252482034817162 0.262565943116342 0.267750885201987 0.259742370174666 0.277520872427894 0.252482034817162 0.264758069973300 0.252482034817162 0.262277157223403 0.252482034817162 0.283238186150897 4 4 - 9551666 9552848 9552256 9551447 9555803 - gene protein_coding_gene FALSE TRUE AT4G16970.1 kinase similar to casein kinase II alpha chain, putative [Arabidopsis thaliana] (TAIR:AT2G23070.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47989.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0467738414337825 -0.466657470615256 0.64994899382575 1 -0.501014986438819 4.15978420115622 -0.0467738414337825 0.0973003481109471
AT2G23030_at 1.662582385859 1.26764542533802 1.37690308017115 1.31554786659630 1.09604656002628 1.47743413066840 0.844109360556448 1.19802091102186 1.20812233719483 1.26837163272645 0.897285983492651 0.939856727265212 1.31862005312797 0.964569664198115 1.36189635548372 1.27617378185407 0.728548217079907 1.35979960761048 0.763624621011541 0.192894665405132 0.197314471093392 0.192894665405132 0.196693431129495 0.194759840183076 0.204029146518367 0.196244712366013 0.192894665405132 0.205015218759394 0.203921743274128 0.199709048615005 0.192894665405132 0.194364866964369 0.194182986510323 0.20057805725179 0.198131636948636 0.210244201174166 0.197215036603908 0.204232779809302 2 2|0 -|/ 9810902 9812520 9811594.4 9810576 9813780 - gene protein_coding_gene FALSE TRUE AT2G23030.1 SNRK2-9/SnRK2.9 (SNF1-RELATED PROTEIN KINASE 2-9, SNF1-RELATED PROTEIN KINASE 2.9); kinase encodes a member of SNF1-related protein kinases (SnRK2) similar to SNRK2-5/SNRK2.5/SRK2H (SNF1-RELATED PROTEIN KINASE 2-5, SNF1-RELATED PROTEIN KINASE 2.5), kinase [Arabidopsis thaliana] (TAIR:AT5G63650.1); similar to protein kinase 3 [Glycine max] (GB:AAB68961.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0495988285623865 0.466484021850718 0.650069231862364 1 -0.501095225663955 2.37272787956716 0.0495988285623865 0.113538833189403
AT4G18880_at 8.47071815511798 8.76295962204241 8.56174620751402 8.60066417430821 8.46191444046315 8.2453479985929 6.44804739438328 7.05361284977476 6.4939493123648 5.6175161907988 4.92182436219336 5.78445045659054 5.47614465018286 5.79164349853347 4.55874506362927 5.34903746346695 5.61781109523613 5.591825941964 6.0912261629852 0.246106265454076 0.239283606868579 0.245299077126735 0.240338941520996 0.239283606868579 0.242508158631885 0.239283606868579 0.243797320226583 0.244751317517240 0.246792778010938 0.244596009529304 0.240587835755545 0.244944481468316 0.245487602451461 0.241054542109286 0.241929394344812 0.245218310729303 0.250369453796131 0.239283606868579 4 4 - 10347792 10348336 10348053.364 10347593 10349573 - gene protein_coding_gene FALSE TRUE AT4G18880.1 AT-HSFA4A (Arabidopsis thaliana heat shock transcription factor A4A); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-4a (AtHsfA4a) (Heat shock factor protein 21) (HSF 21) (Heat shock transcription factor 21) (HSTF 21) (HSFA4A) [Arabidopsis Thaliana] (GB:O49403;GB:O82078); similar to AT-HSFA4C (Arabidopsis thaliana heat shock transcription factor A4C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G45710.1); similar to heat shock transcription factor [Phaseolus acutifolius] (GB:AAL12248.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0512275638241364 0.466158138058109 0.65029516897152 1 -0.501245905661899 13.80262595787 0.0512275638241364 0.122432992066812
AT2G18850_at 4.11562605850807 3.94686794664758 3.83769005530845 3.65725073798801 4.65575931396536 4.24467481563448 4.29211648121982 4.15193368760254 3.13456297341564 3.6394369269713 3.66169283180720 3.57534999085567 3.99989048153799 4.02384175846391 3.70563411192702 3.20017308856359 3.71257420855239 3.13708002583319 3.75376907703371 0.213909442803789 0.214058827496282 0.209814832350017 0.218667018750276 0.209814832350017 0.213298508916769 0.213992157138036 0.218632014409505 0.217592853313014 0.215781703086743 0.216557260510763 0.214574513674720 0.209814832350017 0.215078335254564 0.211579592734593 0.210778729061509 0.216217304135066 0.212142237601667 0.223033815725389 2 2 + 8169447 8170532 8170054.818 8167816 8170771 + gene protein_coding_gene FALSE TRUE AT2G18850.1 similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to Os08g0244400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061350.1); similar to hypothetical protein DDBDRAFT_0218318 [Dictyostelium discoideum AX4] (GB:XP_640721.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) 0.0449904618076535 0.466157444001958 0.650295650203866 1 -0.501246226467357 7.68088283110904 0.0449904618076535 0.0864718203045262
AT1G09890_at 1.88472962436328 1.76085583564354 1.44476368769845 1.99662883011451 1.88410963290233 1.92419281024603 1.96330602321343 1.66736258603655 2.28921631653054 2.13517099091886 1.89847008565835 2.53337720848765 1.71232022629312 2.08517376241544 2.34815301241008 2.07301497897294 2.16983482384285 2.2739494995762 2.26026741780416 0.184897470374368 0.185772678494792 0.190450045615766 0.184590811405793 0.185369092400309 0.189640366937472 0.183454897841784 0.184690627970926 0.192842134091187 0.184927699951063 0.182207630954562 0.184860044631490 0.210974603165299 0.188711238047802 0.187482074909093 0.184867031813136 0.193991386963000 0.184726074054896 0.189936304989277 1 1 - 3215135 3216022 3215624.455 3215093 3217540 - gene protein_coding_gene FALSE TRUE AT1G09890.1 lyase similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09910.1); similar to Os08g0554100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062464.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); contains InterPro domain Rhamnogalacturonate lyase; (InterPro:IPR010325) -0.0490356595589894 -0.466060188819572 0.650363084925398 1 -0.501291175068763 3.9982460995064 -0.0490356595589894 0.110685880678051
AT4G34870_at 10.2372300836957 10.553213844907 10.1005961628692 10.3086599434141 10.1923971147445 9.81668554285213 10.6677764166297 10.8409691538517 10.1008831251138 10.1022334357136 10.3529825062198 10.6906580883425 10.3044197813284 10.3137940417886 10.4142511078641 10.4620009303445 10.4021594586588 10.0847481188428 9.80052930201626 0.115124092851326 0.103619630166542 0.11084917955747 0.110309796592157 0.107064204101364 0.113778152962192 0.104871666218419 0.105906683586421 0.116184381467139 0.106448678344969 0.106906375610347 0.101704996984235 0.102593994687739 0.108403072307075 0.106721257725444 0.101704996984235 0.111075938277812 0.111990935980084 0.107513279714243 4 4 + 16614478 16614930 16614638.818 16614332 16615318 + gene protein_coding_gene FALSE TRUE AT4G34870.1 ROC5 (ROTAMASE CYP 5); peptidyl-prolyl cis-trans isomerase belongs to cyclophilin family Identical to Peptidyl-prolyl cis-trans isomerase CYP18-4 (EC 5.2.1.8) (PPIase CYP18-4) (Rotamase cyclophilin-5) (Cyclophilin of 18 kDa 4) (Cyclophilin-1) (CYP18-4) [Arabidopsis Thaliana] (GB:Q42406); similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to Peptidyl-prolyl cis-trans isomerase (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (GB:Q39613); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.0466506086209630 -0.465896966911358 0.65047626695721 1 -0.5013665914372 20.5293620537646 -0.0466506086209630 0.097017349869216
AT1G73270_at 1.11892550164066 1.32322544240415 1.51827698138131 1.71307708498717 1.12871862221644 1.17322292254996 0.855415562388518 1.37906335911498 1.78007952280171 1.35128427003569 1.15717899320700 1.14096449686944 1.73411370986357 1.66417195914654 1.12510047448866 1.40239544977907 1.51944552947066 1.38060741351393 1.39641470631820 0.173611219466225 0.177387520033511 0.180508448709287 0.176445359916409 0.172468355061478 0.177743170236784 0.183232527099272 0.174263205091261 0.176577764189984 0.202551717226182 0.182451482448937 0.174579554738312 0.175104661884258 0.178895145090255 0.172468355061478 0.175605123486260 0.178950464087722 0.182443703680793 0.174952813641092 1 0|1 /|- 27553099 27554153 27553616.625 27553067 27556178 - gene protein_coding_gene FALSE TRUE AT1G73270.1 SCPL6 (serine carboxypeptidase-like 6); serine carboxypeptidase similar to SCPL3 (serine carboxypeptidase-like 3), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73280.1); similar to SCPL1 (serine carboxypeptidase-like 1), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G36180.1); similar to SCPL2 (serine carboxypeptidase-like 2), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73300.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0477020949852333 0.465881053233967 0.650487302380292 1 -0.50137394296724 2.72611906109085 0.0477020949852333 0.103235947012562
AT4G14390_at 3.27321047938726 4.00953614158209 4.71810543703767 4.42236692216308 2.90807615223398 2.39533907260589 2.19701644102322 2.27968873431862 3.84230979111 2.62858570948048 2.36736070283044 2.00841738248103 2.13202102066937 2.54707154399616 2.03523179028712 2.29901315934203 2.0410021687618 2.74517096569006 2.71683871262209 0.242952539848339 0.253442685731923 0.279269237135281 0.267079661305387 0.245877711297166 0.263874193081995 0.246477889850156 0.257666903513458 0.247332427800195 0.242952539848339 0.242952539848339 0.249096221700866 0.246980894764676 0.249436343797235 0.245620605787912 0.242952539848339 0.253778384685579 0.242952539848339 0.243214134536961 4 4 + 8291502 8291991 8291789.636 8289640 8292079 + gene protein_coding_gene FALSE TRUE AT4G14390.1 ankyrin repeat family protein similar to ACD6 (ACCELERATED CELL DEATH 6), protein binding [Arabidopsis thaliana] (TAIR:AT4G14400.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT4G05040.3); similar to Os11g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065908.1); similar to hypothetical protein LOC_Os11g08050 [Oryza sativa (japonica cultivar-group)] (GB:AAX95030.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0597790161906258 -0.465839734971496 0.65051595515511 1 -0.501393029352283 5.94266200395803 -0.0597790161906258 0.164116668559547
AT2G17940_at 2.12628734027850 2.34068257951592 1.99281093648247 2.5527583552589 2.62491767291110 2.20575373018032 2.67017104432524 2.05220905723159 2.25271038828184 2.70376526279109 2.75469780668865 2.44518070447807 2.64415575532514 2.67655064241504 2.76103169413209 2.26010067900318 2.74444925807558 2.72743278941894 2.70306907023816 0.192028696122875 0.193009701575368 0.204008815861384 0.199728618125788 0.199280042717009 0.194077111048352 0.198241915899061 0.201189222905806 0.200390321597189 0.20299296286611 0.196498757968122 0.191305223652711 0.198488048887456 0.191305223652711 0.192872679308364 0.195233009214723 0.207569585891236 0.193910905386156 0.205817991775899 2 2 + 7810008 7810846 7810500.909 7809907 7811029 + gene protein_coding_gene FALSE TRUE AT2G17940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51220.1); similar to F10A5.8 [Medicago truncatula] (GB:ABE81388.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.0601205053960536 0.465751583313727 0.650577087230604 1 -0.501433744338872 4.91063958450423 0.0601205053960536 0.165724744933480
AT4G10270_at 2.84452956781583 2.96484026567189 3.2475785067538 3.12870531580201 3.32317193561231 3.31966524492833 2.66642077530296 2.86363209924615 3.20102480122913 2.34843595779917 2.43205314718154 2.194770017558 2.48494846793010 2.46486789544367 2.38397299150592 2.8725104356543 2.41146520926424 2.78300363939643 2.98185273699444 0.190628544605186 0.189513379035515 0.191410322533779 0.187037632558763 0.192859591051451 0.185537218931806 0.183292703872934 0.186543093947222 0.187757577553940 0.190824426958433 0.185317813297606 0.187008363168188 0.182943765462931 0.182943765462931 0.186927100379068 0.185349985835181 0.188064108081795 0.197663074749325 0.193143672399924 4 4 + 6374803 6375046 6374908.727 6374730 6375206 + gene protein_coding_gene FALSE TRUE AT4G10270.1 wound-responsive family protein similar to wound-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G10265.1); similar to putative wound-induced protein [Medicago sativa subsp. x varia] (GB:CAB65284.1); similar to wound induced protein [Solanum lycopersicum] (GB:CAA42537.1) 0.0398011919578841 0.465540564896967 0.650723436785678 1 -0.501531178339574 5.718428034308 0.0398011919578841 0.0449642850528765
AT3G61120_at 0.533959216542592 0.445551633136386 0.213874950812261 0.436288223498394 0.559942621099829 0.932628266616419 0.487011983722742 0.546802357658467 0.347390603383265 0.867767784005328 0.504167922853861 0.642149118601299 1.199704818521 0.602012635488895 0.138226239901378 0.467369729546343 0.855349580476425 0.382316249523097 0.417155168986192 0.219639130970244 0.212807453026476 0.217524117310501 0.222827825304345 0.213697262296818 0.222380779129332 0.217777189979739 0.213878224454474 0.221447897244037 0.230221007370468 0.214185495828130 0.216565889823270 0.218021192515023 0.224011001658535 0.221974609649358 0.212807453026476 0.213884463746113 0.216523555168601 0.217124665294916 3 3|0 -|/ 22629391 22631281 22630022.125 22629234 22631466 - gene protein_coding_gene FALSE TRUE AT3G61120.1 AGL13 (AGAMOUS-LIKE 13); DNA binding / transcription factor Identical to Agamous-like MADS-box protein AGL13 (AGL13) [Arabidopsis Thaliana] (GB:Q38837;GB:Q9M2F0); similar to AGL6 (AGAMOUS LIKE-6), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G45650.1); similar to MADS-box protein AGL13 (GB:AAC49081.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.0435798679070607 0.465484230824238 0.650762509279721 1 -0.501557182441653 1.09101568446370 0.0435798679070607 0.0773446023419699
ATCG00630_at 11.9198212228843 13.1005917467195 11.9519985588312 12.6405071595659 11.9637672655411 11.9904532125615 12.2162105357483 13.3153552375662 13.8625525819695 13.8348116268096 14.5041412067029 14.4600751208384 14.3182695463767 14.3871428234147 14.2127027344053 14.3254202735831 13.5040920920682 13.8364093425588 13.9407760512577 0.148021747542466 0.138156506525468 0.163065735054752 0.138156506525468 0.139156594703540 0.157107206770082 0.140061774475026 0.141509176630226 0.142877557131939 0.138156506525468 0.141830886963730 0.142926921656367 0.139114625248844 0.142132068191382 0.138867260837668 0.143330992949730 0.141628456540164 0.142687619193153 0.138160967098614 C C + 66935 67034 66983.273 66929 67063 + gene protein_coding_gene FALSE TRUE ATCG00630.1 Encodes subunit J of photosystem I. Identical to Photosystem I reaction center subunit IX (PSI-J) (psaJ) [Arabidopsis Thaliana] (GB:P56769); similar to photosystem I subunit IX [Eucalyptus globulus subsp. globulus] (GB:YP_636318.1); similar to photosystem I reaction center subunit IX [Lactuca sativa] (GB:YP_398349.1); contains InterPro domain Photosystem I reaction centre, subunit IX / PsaJ; (InterPro:IPR002615) -0.0935807903950305 -0.465338832331232 0.650863360630079 1 -0.501624285212011 26.4237939820134 -0.0935807903950305 0.303566409252168
AT3G03170_at 1.69398039946612 1.90887235388135 1.24492325313710 1.82894476920645 1.88580483995799 1.58155887345910 1.53496725671128 2.03565153782936 2.04059655638117 2.08670103318848 2.04791022562547 1.60580892658973 1.8113444577308 2.42788112868941 2.09227192483101 2.00723488118604 2.2022064431233 2.22251716241379 1.89218151975433 0.22622621316477 0.223633805124324 0.229399791878537 0.227126654264656 0.236627043333436 0.227186177397219 0.223437727822740 0.231147538302418 0.230893596834492 0.231492646865719 0.221280147084344 0.229032708093189 0.222773527393223 0.224898425012998 0.225067919681105 0.222570063219056 0.224787215778999 0.222645990813211 0.232678328927855 3 3 + 732116 732706 732429.455 731898 732882 + gene protein_coding_gene FALSE TRUE AT3G03170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24890.1) -0.0562030478497497 -0.465006462768588 0.651093926349625 1 -0.501777601452617 3.74365787556360 -0.0562030478497497 0.147909613703299
AT4G14410_at 8.20124079438667 8.37042016199834 8.37599863729921 8.3702874445257 8.8045236750561 8.5223984106519 8.68369054664924 8.31594735117082 8.35923199404106 8.82309449321825 8.73021087444893 8.58819503201781 8.45923126035596 8.5430664669906 8.38179103014455 8.7221661362682 8.70608230229546 8.62637469063715 8.70995837556254 0.118882265514734 0.118782860614000 0.121035642146946 0.119067487536266 0.125056295551619 0.126050499811836 0.122284028290477 0.12709486019991 0.135460844723576 0.124291712464076 0.122618110865030 0.118915549939311 0.127346809980799 0.124253189483241 0.123638039193924 0.118779420197335 0.126370417534094 0.126038935094318 0.129598899275647 4 0|4 /|+ 8301019 8301465 8301275.889 8299755 8301663 + gene protein_coding_gene FALSE TRUE AT4G14410.1|AT4G14410.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G23210.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE96711.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0446777157680873 0.464621153193783 0.651361264460979 1 -0.501955206617432 17.0682640502600 0.0446777157680873 0.0853922625608183
AT3G57060_at 2.33115080657944 2.24569223975023 2.19981892224902 2.30431338441994 2.18206898378491 2.38756523684729 2.5971026946303 2.7517572309391 2.07104873387736 2.51704407539050 2.75975314892428 2.48724689349678 2.56369691155096 2.53588502590633 2.48689314971903 2.38843706558275 2.54395838455993 2.36290091996401 2.56257545230932 0.22153623810367 0.217180404657801 0.221389454533424 0.219286478392487 0.21818310421292 0.223671404479888 0.225272035568026 0.219119638245493 0.218020961604070 0.219015238564926 0.221376725761594 0.216704070121799 0.221258857957459 0.222282316787273 0.21815993790556 0.216538844704531 0.218417839379055 0.220186259708946 0.220034647750211 3 3 - 21126079 21126845 21126460.7 21125777 21132030 - gene protein_coding_gene FALSE TRUE AT3G57060.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os07g0659500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060526.1); similar to Chromosome condensation complex Condensin, subunit D2 (ISS) [Ostreococcus tauri] (GB:CAL52474.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Non-SMC condensin subunit, XCAP-D2/Cnd1; (InterPro:IPR007673); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0402218804394322 -0.464599526864471 0.651376270907123 1 -0.50196517090838 4.82475994972773 -0.0402218804394322 0.0502660484650405
AT3G21660_at 1.59538390755012 1.39133968008701 1.40294628982179 1.49355219089297 1.72489268304578 1.54697527394001 1.71055139182927 1.41075759209585 1.76823594390752 1.86538711540613 1.56126664202850 1.69605046984396 1.81493396879249 1.62412282504862 1.34720594142166 1.63452551607676 1.84778372529545 1.67937097498869 1.61985822168722 0.219654567640315 0.223319780876880 0.222896509644976 0.217800186037739 0.218487478842879 0.226484654432706 0.223201891156931 0.225680207593473 0.2186577486888 0.220997428739811 0.225641651328160 0.217800186037739 0.221452099417737 0.217800186037739 0.217800186037739 0.227614458480649 0.223328211927659 0.220513479010246 0.222069661981208 3 3 - 7624523 7624967 7624713.727 7624502 7626661 - gene protein_coding_gene FALSE TRUE AT3G21660.1 UBX domain-containing protein similar to ATB' GAMMA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) [Arabidopsis thaliana] (TAIR:AT4G15410.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain SEP; (InterPro:IPR012989) -0.0427097262643503 -0.464544244997687 0.651414631565232 1 -0.501990639905441 3.2354588436265 -0.0427097262643503 0.0716401168102969
AT1G06040_at 11.5807989964486 11.9328858876223 11.9415685544854 12.0965906118048 12.2858590499909 12.1310151536661 12.2642257619398 12.4689375809644 12.3025580322389 12.3349272129725 12.3843457710835 12.2293567801932 12.6318567812699 12.4679758585844 12.0474692829216 12.4427717000874 12.3150793363791 12.3529932303786 12.3323446427490 0.0755352140292857 0.0736638012527922 0.0786974861356844 0.0750451936521354 0.0760423487612779 0.0784597729207606 0.0766484693106571 0.074311764714924 0.0832046727395534 0.0737417080165879 0.0766290091026466 0.0736638012527922 0.073760231831482 0.0750848679852543 0.0776992572189799 0.0741898540084979 0.0803815695310412 0.0755899195203636 0.0741180724147865 1 1 - 1828670 1829479 1829049.545 1828412 1829889 - gene protein_coding_gene FALSE TRUE AT1G06040.1|AT1G06040.2 STO (SALT TOLERANCE); transcription factor/ zinc ion binding Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. Identical to Salt-tolerance protein (STO) [Arabidopsis Thaliana] (GB:Q96288); similar to STH (salt tolerance homologue), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G31380.1); similar to salt-tolerance protein [Glycine max] (GB:ABB29467.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.04387537451752 0.464537282536758 0.651419462963542 1 -0.501993847386013 24.4288640605814 0.04387537451752 0.0800329790438265
AT4G12840_at 3.69092698846423 3.7260922603936 4.05436324873231 3.558754387217 4.00192647248302 3.12547558934992 4.48873984315154 3.79353474985501 3.77201582626571 4.34385829890236 4.41356090796536 4.83589563641438 4.17000196642115 3.91623273516616 4.04578583289446 4.05035182410361 4.08910342045620 4.12358370367967 4.20480346214802 0.220737436754936 0.220162009936989 0.220236429059047 0.218966278055505 0.216858513998895 0.227624819894724 0.215090525812624 0.215090525812624 0.230611930540629 0.22989365579721 0.215206582648878 0.218042644466543 0.224905784891944 0.225887932548752 0.226367368534181 0.215090525812624 0.228605378517972 0.219819160536683 0.218837530647338 4 4 - 7533626 7534673 7534178.4 7533618 7535830 - gene protein_coding_gene FALSE TRUE AT4G12840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91850.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.0705107808691346 -0.464313811438474 0.651574543151628 1 -0.502096772035333 7.96120520870232 -0.0705107808691346 0.211830573273052
AT1G68090_at 0.218082049713943 0.44968311927782 0.193236418301362 0.631236674229548 0.250866136922809 0.516747776691505 0.384138713880158 0.148953762674345 0.857880791060287 0.193743368890678 0.273050632423081 0.261228540649634 0.305561953364486 0.706177139774849 0.483631668057187 0.263370522483079 0.342089494043916 -0.054429729628751 0.496865303818996 0.212233795719998 0.207298217998441 0.213234920103831 0.208898153880208 0.208118636281245 0.210033217731479 0.207971781171471 0.2078551197395 0.212450962336575 0.210867523763126 0.207298217998441 0.211942309114823 0.212795226847761 0.211507033828360 0.210793509676440 0.215429403218784 0.210374110355528 0.219584635728477 0.211915701846783 1 1|0 -|/ 25523126 25523889 25523515.4 25523105 25524437 - gene protein_coding_gene FALSE TRUE AT1G68090.1 ANNAT5 (ANN5, ANNEXIN ARABIDOPSIS 5); calcium ion binding / calcium-dependent phospholipid binding Encodes a calcium-binding protein annexin (AnnAt5). similar to ANN7 (ANN7, ANNEXIN ARABIDOPSIS 7), calcium ion binding / calcium-dependent phospholipid binding [Arabidopsis thaliana] (TAIR:AT5G10230.1); similar to annexin-like protein [Medicago sativa] (GB:CAA72183.1); similar to Os09g0394900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063096.1); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Annexin, type V; (InterPro:IPR002392) -0.047885393397156 -0.463883476055628 0.651873227579935 1 -0.502294838997648 0.768492172579397 -0.047885393397156 0.105476538952448
AT1G17890_at 6.84460492873732 6.87973272899321 6.67003533763773 6.69506654982307 5.49655184357975 5.78807598047827 6.06277163264841 6.05920193144992 6.06589785039124 5.00832335800752 5.74760038896746 6.30983120866234 5.49675636250551 5.89779810897929 6.3173790116158 5.20859713947083 5.43705673853649 5.65974162771845 5.06513978178578 0.202679751700508 0.201969573374610 0.199078296613997 0.199200108668751 0.211783059014644 0.212732041339355 0.206667816511037 0.199269289820317 0.212574476991113 0.209451282515618 0.201605244911945 0.199882756453112 0.204893307732518 0.203890611721673 0.200839288593018 0.195763615664592 0.205810880486255 0.200761563713260 0.209954478274529 1 1 - 6154505 6155006 6154779.091 6154261 6155745 - gene protein_coding_gene FALSE TRUE AT1G17890.1|AT1G17890.2|AT1G17890.3 GER2; catalytic Identical to Putative GDP-L-fucose synthase 2 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D- mannose-3, 5-epimerase-4-reductase 2) (AtGER2) (GER2) [Arabidopsis Thaliana] (GB:Q9LMU0;GB:Q3EDA2;GB:Q3EDA3); similar to ATFX/GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1), GDP-L-fucose synthase [Arabidopsis thaliana] (TAIR:AT1G73250.1); similar to Os06g0652400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058235.1); similar to GDP-fucose synthetase [Desulfotomaculum reducens MI-1] (GB:ZP_01149460.1); similar to GDP-fucose synthetase [Methanosarcina barkeri str. fusaro] (GB:YP_303606.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.0402063495006636 0.463572942096208 0.652088800666219 1 -0.502437656602981 11.8815711516861 0.0402063495006636 0.0510025855808186
AT4G05630_at 1.32090322271385 1.28004916651438 1.19923556280411 1.65394428811736 1.28397117318981 1.37532523625547 1.32541822753542 1.45074546544150 1.21306222658537 1.74985259012686 1.38843706580410 1.63674309262562 1.48414582684485 0.92214952534495 1.20376818590584 1.49793729600348 1.36726259399762 1.73519440697208 1.61743000193243 0.206585056938574 0.213396858974907 0.205453670868953 0.204633007779703 0.205275743979381 0.203863808944249 0.203863808944249 0.208949834615189 0.212709794735262 0.207691770496507 0.205961457674967 0.208649362081649 0.209251458988017 0.206658340036881 0.209759625276052 0.203863808944249 0.206969123904329 0.216424321837647 0.207393125442809 4 4 - 2988466 2988777 2988639.4 2988445 2988819 - gene protein_coding_gene FALSE TRUE AT4G05630.1 contains InterPro domain Cupredoxin; (InterPro:IPR008972) -0.0442434062435836 -0.463148122897395 0.65238376454059 1 -0.502632886637156 2.82681722052259 -0.0442434062435836 0.0834406279393838
AT1G79400_at 1.78120215658669 1.31541507451714 1.93328515139595 1.42571801819404 1.57757682562536 1.44711077898883 1.45375751167639 1.35311719356254 1.48929269920619 1.29488491758714 1.37359355799018 1.29319640739215 1.59071397613350 1.61918893719183 1.66246295659161 1.64737477375840 1.49356750850789 1.63923751170243 1.89033172760096 0.187050051302613 0.189986188762838 0.187516349090992 0.19037764499636 0.186465797155507 0.185354190641559 0.185086895537914 0.193917472694151 0.185086895537914 0.18600621577591 0.191992995938301 0.185086895537914 0.195422220969955 0.185086895537914 0.189720895031876 0.187737697287993 0.188421342775977 0.189564679259823 0.185485933322926 1 1 + 29871963 29872634 29872233.909 29869885 29872733 + gene protein_coding_gene FALSE TRUE AT1G79400.1 ATCHX2 (CATION/H+ EXCHANGER 2); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX1 (CATION/H+ EXCHANGER 1), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G16380.1); similar to Sodium/hydrogen exchanger [Medicago truncatula] (GB:ABE93142.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.0508984408295468 0.462909727090118 0.652549316657212 1 -0.502742368732968 3.08494120638 0.0508984408295468 0.122579867990836
AT2G21710_at 2.13269673428936 1.77971541175769 1.76205039100668 1.60548491218107 1.63080708093850 1.47591358539603 1.69045295188336 1.39658254242752 1.41689633646034 1.88847200677956 1.62064889958883 1.52634754127215 2.17071490035747 1.32671444538443 2.51891097533257 1.61488960087566 1.98318195058531 2.27551883475067 1.67013469326163 0.198308823937710 0.193221274451383 0.202848423227142 0.203668881351921 0.193221274451383 0.193221274451383 0.201733180021291 0.200510440639794 0.214141193153583 0.20421471101198 0.195737566407729 0.197001130871066 0.198582855012666 0.202006396098353 0.20328269265823 0.193221274451383 0.208890556650492 0.193221274451383 0.194210312137645 2 0|2 /|+ 9279789 9280285 9279983.222 9277966 9280498 + gene protein_coding_gene FALSE TRUE AT2G21710.1 EMB2219 (EMBRYO DEFECTIVE 2219); transferase similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to Mitochodrial transcription termination factor-related [Medicago truncatula] (GB:ABE82727.1); contains InterPro domain Di-trans-poly-cis-decaprenylcistransferase; (InterPro:IPR001441); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) 0.0449084818211467 0.462641615745954 0.652735527871784 1 -0.502865432989159 3.45327140407781 0.0449084818211467 0.0881492921735636
AT4G19680_at 1.02522830454354 1.39305533262559 1.32777793294121 1.29042368321091 1.04384191313554 1.27394098013374 1.38592056336896 1.43648142603646 1.5291162516838 1.47717248660122 1.18539568173975 1.50202758665800 1.49627390399626 0.987305416642085 1.17919787180133 1.44405896346322 1.93166267085084 0.862750716598349 0.9944232392876 0.199528338412834 0.203579769588465 0.204294614079699 0.200574293237339 0.200570525994019 0.201715838230255 0.202058100012639 0.208777486406541 0.200493694742275 0.204312945600506 0.201634334700339 0.199973896835127 0.221461566570609 0.197209054414563 0.206420773949637 0.197209054414563 0.199540146307331 0.205074034787969 0.204832296231324 4 4|0 +|/ 10703905 10704562 10704277.6 10703372 10704826 + gene protein_coding_gene FALSE TRUE AT4G19680.1|AT4G19680.2 IRT2 (iron-responsive transporter 2); iron ion transporter/ zinc ion transporter encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone. Identical to Fe(II) transport protein 2 precursor (Iron-regulated transporter 2) (IRT2) [Arabidopsis Thaliana] (GB:O81850;GB:Q5M756); similar to IRT1 (IRON-REGULATED TRANSPORTER 1), cadmium ion transporter/ iron ion transporter/ manganese ion transporter/ zinc ion transporter [Arabidopsis thaliana] (TAIR:AT4G19690.2); similar to putative Fe (II) transporter [Thlaspi caerulescens] (GB:CAD61959.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689)|Identical to Fe(II) transport protein 2 precursor (Iron-regulated transporter 2) (IRT2) [Arabidopsis Thaliana] (GB:O81850;GB:Q5M756); similar to IRT1 (IRON-REGULATED TRANSPORTER 1), cadmium ion transporter/ iron ion transporter/ manganese ion transporter/ zinc ion transporter [Arabidopsis thaliana] (TAIR:AT4G19690.2); similar to putative Fe(II) transporter 1 [Thlaspi caerulescens] (GB:CAL25151.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) -0.0430809185052155 -0.462354927872719 0.652934668397417 1 -0.502996948339553 2.60066114732929 -0.0430809185052155 0.0758670627767512
AT2G10340_at 3.43492078330655 3.32575636071892 2.66329714884393 3.2212831370819 3.19875832838191 3.13583534718814 2.86010504142659 3.54565688317459 3.43732041125777 3.75603676431181 3.83991007796508 3.53815865400295 3.64475815200704 3.70218782416388 4.13074965952816 3.73768385915259 3.7901449238392 3.68181586975416 3.71413589666410 0.211076307910965 0.214351671633189 0.211786721053758 0.218938009988906 0.214422870858944 0.214153100942018 0.215494670551966 0.216437798130961 0.218919299354034 0.218536175258826 0.217934803308270 0.214442209796778 0.216110696802377 0.207431135782874 0.212404813366461 0.208001416115652 0.212079644114105 0.216796028149911 0.214673906222342 2 2 - 3991129 3991342 3991243.909 3991114 3991371 - gene protein_coding_gene FALSE TRUE AT2G10340.1 unknown protein -0.0572355866544748 -0.462078964495599 0.653126386124004 1 -0.503123470109355 6.87020520458008 -0.0572355866544748 0.154514254250960
AT3G59570_at 4.11528742698856 4.01021631978774 3.74352229258743 3.66577475768691 3.2487286704987 3.17591433718119 2.61938300951296 2.72314457474465 3.31954599212784 2.84501112645638 3.11754500438826 3.11251381905468 2.51475708266180 2.81159802118122 3.02872131995836 2.68030507579254 2.71596491014183 3.20917028715243 2.57554383040389 0.183658351044404 0.184048693950067 0.183725318250377 0.19030854416072 0.182340203024247 0.183284458050470 0.184033274446004 0.181888085963977 0.186129197816731 0.185918133695209 0.184721544963457 0.179789633336054 0.183893373931816 0.182749784568895 0.185247504882062 0.181396754813206 0.184523311424029 0.182413359071462 0.184579909245171 3 3|0 -|/ 22012018 22015062 22013608.533 22011809 22017033 - gene protein_coding_gene FALSE TRUE AT3G59570.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43490.1); similar to putative GTPase-activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45492.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.0384660693877176 0.462037618946286 0.653155112026792 1 -0.503142419691683 6.31884088514223 0.0384660693877176 0.0315097361166510
AT2G23170_at 3.46812428558862 3.42145031692023 4.47634122274009 4.84860856641657 2.88411582899691 2.69442814398234 1.29012432616009 1.70817345212473 6.7464377676437 1.77779612128654 3.12035143495045 3.63461868554879 1.58745808756640 1.27421202888693 4.58866852451602 1.15194398920902 1.30661550398535 2.10216472649021 2.55785137192983 0.263093931248456 0.270305870890145 0.270752395792711 0.265169793088692 0.260684044368474 0.265449697490575 0.269904301734716 0.280333536937663 0.323416982239821 0.27035953504969 0.265402364040921 0.271577940393277 0.265295848796283 0.272739274786005 0.269145811912592 0.261111090793501 0.272144795783339 0.265946842821945 0.262703014083398 2 2 - 9871205 9871774 9871449.364 9870935 9873642 - gene protein_coding_gene FALSE TRUE AT2G23170.1 GH3.3; indole-3-acetic acid amido synthetase encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Identical to Indole-3-acetic acid-amido synthetase GH3.3 (EC 6.3.2.-) (Auxin- responsive GH3-like protein 3) (AtGH3-3) (GH3.3) [Arabidopsis Thaliana] (GB:O22190); similar to GH3.1 [Arabidopsis thaliana] (TAIR:AT2G14960.1); similar to GH3.4, indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT1G59500.1); similar to YDK1 (AUXIN UPREGULATED1, YADOKARI 1), indole-3-acetic acid amido synthetase [Arabidopsis thaliana] (TAIR:AT4G37390.1); similar to auxin and ethylene responsive GH3-like protein [Capsicum chinense] (GB:AAS02074.1); similar to Nt-gh3 deduced protein [Nicotiana tabacum] (GB:AAD32141.1); similar to auxin-responsive GH3 product [Glycine max] (GB:CAA42636.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) -0.0471844761534915 -0.461885588809216 0.653260743997575 1 -0.503212084497367 6.11881203933161 -0.0471844761534915 0.102600828545272
AT2G31910_at 0.474211723007019 0.649744790348482 0.692201942627167 0.349569726874852 0.60790780770234 0.628923720935753 0.795382297031988 0.644445020680914 1.09642651782535 0.426308895991778 1.06092227373687 0.576124206131056 0.897201493674959 0.505081032321429 1.07354990557952 1.06120407465305 0.863729733051441 1.21548163899577 0.72862210442869 0.211985399955166 0.217718937957154 0.215850212625184 0.216377801187531 0.213944533369533 0.213579491255597 0.211985399955166 0.216027393194591 0.218920459293587 0.213349528748576 0.226421518866961 0.22216749527982 0.219793827084766 0.214135060873087 0.217368958861954 0.211985399955166 0.221558975267039 0.214817897329984 0.214448775919419 2 2 + 13580499 13581031 13580721.909 13578794 13581096 + gene protein_coding_gene FALSE TRUE AT2G31910.1 ATCHX21 (CATION/H+ EXCHANGER 21) member of Putative Na+/H+ antiporter family similar to ATCHX23 (CATION/H+ EXCHANGER 23), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G05580.2); similar to Os05g0485000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055872.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABE79742.1); similar to Os01g0817400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044623.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.0424570652270009 0.461778659512114 0.653335044238639 1 -0.503261069568214 1.43385552907604 0.0424570652270009 0.0716522429380779
AT1G01300_at 6.30330959251039 6.66949975167209 2.12296381129156 2.26168559436997 3.16212767538645 2.95983885271063 3.25507382370060 3.89407274775189 5.05258296463626 3.2650712734395 6.54140326257463 8.19614922270115 5.45185440515928 6.9152521152733 7.81937180186305 6.63420319819816 3.13874647670146 4.841948023384 3.36615192646369 0.240993421632029 0.240678348053454 0.252751180090133 0.234859236901358 0.233456194781815 0.237768984344259 0.241381069594089 0.239898030459558 0.247081749513377 0.244569221573014 0.233456194781815 0.233974980832691 0.242083559391723 0.234480721954535 0.240963889546003 0.233456194781815 0.236981415382259 0.238398921643622 0.244087056164523 1 1 + 117938 118472 118231.182 116943 118764 + gene protein_coding_gene FALSE TRUE AT1G01300.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G61820.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAT38006.1); similar to Os05g0590000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056485.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.0530354935418467 -0.461615326604225 0.653448544333867 1 -0.503335872544098 8.87205554021338 -0.0530354935418467 0.134335387791080
AT1G69780_at 4.47023484683128 4.47455706496112 3.86588936454583 4.07110597839402 3.87664069338242 4.2752134556302 4.19610598863585 4.94589288897231 4.00929773221403 4.11665653000683 5.74410011368517 4.97611756014691 5.07670672176402 4.92475212453655 4.78081687747559 4.7146857356154 3.80357106674146 4.56795734756727 5.18516875184119 0.212245461316103 0.206136570218673 0.211224440551383 0.219544370560303 0.218101487170024 0.207748942107621 0.207495442736865 0.215948613670858 0.204807968028906 0.20892631062389 0.205274430794662 0.210736387199462 0.207787251297088 0.213803306110841 0.206477026366006 0.205138087880828 0.222175634528595 0.209532347888893 0.203013672294817 1 1 + 26263240 26264100 26263840.364 26262602 26264414 + gene protein_coding_gene FALSE TRUE AT1G69780.1 ATHB13 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12); DNA binding / transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-13 (Homeodomain transcription factor ATHB-13) (HD-ZIP protein ATHB-13) (ATHB-13) [Arabidopsis Thaliana] (GB:Q8LC03;GB:Q9S7A4); similar to ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G26960.1); similar to putative DNA-binding protein [Solanum demissum] (GB:AAT40488.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.0564689428039142 -0.461560159084918 0.65348688233314 1 -0.50336113235524 8.90226975923357 -0.0564689428039142 0.151180180193867
AT4G21340_at 0.164096010385418 0.526056029803177 0.444750520327632 0.934518589856787 0.294881962335021 0.571868835972736 0.277187582768385 0.764188995322831 0.328611257264886 0.440466663422168 0.145081271416728 0.24193938147739 0.579798899290095 0.328412359179852 0.253239056688693 0.436876451301052 0.786406770998888 0.869413687716501 0.653372930511756 0.192053800226859 0.19027754262522 0.193720119811842 0.195694788156445 0.193034822917066 0.190731936041696 0.187005484745476 0.184556648902037 0.20069732961699 0.188175249772857 0.192127800210169 0.189067054787974 0.199184182975179 0.194713917000316 0.189932144414294 0.184556648902037 0.200989438000769 0.184707958283732 0.192642782132209 4 4|0 +|/ 11353158 11354174 11353521.111 11352996 11354787 + gene protein_coding_gene FALSE TRUE AT4G21340.1 B70; transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G05170.1); similar to bHLH transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53363.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.054809261789402 0.461496718574837 0.653530970839526 1 -0.503390176581396 0.961841700092292 0.054809261789402 0.143205209495428
AT3G01330_at 1.81887104512067 1.78451926494117 1.92676230376088 2.09593748641451 1.18182645369210 1.91885267899166 1.41385075342232 2.16375199244302 2.01559718312494 2.30841955006455 2.06007441750944 2.31177747636661 2.44297659129558 2.1863871605804 2.48091555554641 2.12430204738988 2.16534796369279 2.33572750079387 2.80533740688372 0.241188809383185 0.235289744716072 0.24720727390789 0.251868900911768 0.252574692466244 0.246634777713559 0.24349263482333 0.238888865989416 0.242256842738553 0.239137253330248 0.241648680904438 0.235456135609602 0.241640059137636 0.249579289336119 0.235289744716072 0.239983777216403 0.242333221086163 0.240506740421869 0.246730718551166 3 0|3 /|- 124783 125447 125070.625 124390 126842 - gene protein_coding_gene FALSE TRUE AT3G01330.1 DEL3 (DP-E2F-like 3); transcription factor Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. similar to DEL2/E2FD/E2L1 (DP-E2F-LIKE 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G14960.1); similar to Transcription factor E2F/dimerisation partner (TDP) [Medicago truncatula] (GB:ABE82375.1); contains InterPro domain Transcription factor E2F/dimerisation partner (TDP); (InterPro:IPR003316); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.0637081620722698 -0.461394052568999 0.653602322356809 1 -0.503437170847583 4.10799148193393 -0.0637081620722698 0.184395393232011
AT1G02690_at 2.67671811525739 3.07198784969808 2.92932125849456 2.94019736380069 2.56994807430773 3.07274224814225 3.01153181026711 2.92637566125776 2.83248477712494 3.0452724119874 2.85543280414385 2.84268946396812 3.27172141644632 2.59165505640251 3.47576265081956 2.9343523974332 2.83298812757049 3.22980478012400 3.29661964746826 0.185390744429727 0.18842114934676 0.191151321714107 0.190166263468603 0.18952877036077 0.186870466948043 0.193206821087309 0.201878294980262 0.200975431469311 0.185390744429727 0.191229122820161 0.191007861747146 0.199414044422639 0.187386856882537 0.190714659831938 0.187128187360930 0.19085939863068 0.187094709292124 0.185502646344265 1 1|0 +|/ 586448 587001 586709.9 584260 587219 + gene protein_coding_gene FALSE TRUE AT1G02690.1|AT1G02690.2 importin alpha-2 subunit, putative similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to Importin subunit alpha (Karyopherin subunit alpha) (KAP alpha) (GB:O22478); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652)|similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to Importin subunit alpha (Karyopherin subunit alpha) (KAP alpha) (GB:O22478); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) -0.0487129490069024 -0.4613166406255 0.653656125028228 1 -0.503472598707613 5.93106602230671 -0.0487129490069024 0.111671894792756
AT3G07920_at 0.704293654036907 2.09030166880270 1.72810682796595 2.23456937957738 1.89028901284114 1.56194794943750 1.75207567241696 1.53503274423270 1.63408379519634 1.93949022800930 1.21896698025360 1.57408335262346 1.91526652141446 1.78382456185781 1.6723337515007 1.42602197570828 1.38764404789738 2.4376591171166 1.96032071847166 0.199783538852702 0.20274156238743 0.196064946746831 0.196064946746831 0.199725611765895 0.207734054668282 0.206456034202914 0.203142796625425 0.201426808065107 0.199316818315619 0.208366421104199 0.199164782378207 0.213527958344943 0.198405320951675 0.198167482595361 0.196064946746831 0.197809936458891 0.196064946746831 0.206393996015524 3 3|0 -|/ 2525310 2525811 2525633.714 2524426 2526235 - gene protein_coding_gene FALSE TRUE AT3G07920.1 translation initiation factor similar to EIF2 BETA (EMBRYO DEFECTIVE 1401) [Arabidopsis thaliana] (TAIR:AT5G20920.3); similar to Translation initiation factor IF5 [Medicago truncatula] (GB:ABE94142.1); contains InterPro domain Translation initiation factor IF5; (InterPro:IPR002735) 0.0828229077853068 0.461237621986816 0.653711046503496 1 -0.503508755999255 3.44788042321672 0.0828229077853068 0.26429464513358
AT4G17640_at 9.46423150157056 9.6373141550654 9.26864920962694 9.48160832868203 9.99963228121215 9.7582257696717 9.40911255461427 9.43906767388887 9.56415692583505 9.31918823378895 9.41909042742107 9.2365917787613 9.34604948076588 9.48986260610693 9.21764844735848 9.44581932072115 9.26363940746051 9.39847885466466 9.3438864949659 0.122714113044755 0.116971558814639 0.131819820267907 0.119252261212573 0.120766971958876 0.125406624014403 0.120290612758542 0.122304688958284 0.131576232316343 0.120389912504479 0.120203973967003 0.125394087813706 0.117514040661978 0.128249750739060 0.120845422307199 0.118337049252167 0.122473712410962 0.115622478475991 0.118367399618877 4 4|0 +|/ 9826063 9826920 9826439 9825210 9827285 + gene protein_coding_gene FALSE TRUE AT4G17640.1 CKB2 (casein kinase II beta chain 2); protein kinase CK2 regulator Encodes casein kinase II beta (regulatory) subunit. Identical to Casein kinase II subunit beta' (CK II beta') (CKB2) [Arabidopsis Thaliana] (GB:P40229); similar to CKB1 (casein kinase II beta chain 1), protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT5G47080.1); similar to casein kinase II beta chain, putative [Brassica oleracea] (GB:ABD65181.1); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) 0.0413338741121498 0.460785478361712 0.654025347692273 1 -0.503715533335755 18.9378425635936 0.0413338741121498 0.0634626171461678
AT4G13830_at 10.5011431426529 10.7960546803706 10.6509087588813 10.6785896219558 11.2576662902914 10.8893162543253 10.9235507329890 10.9773000551183 10.8832658685588 10.8510668633477 10.9688712409275 10.3841678408530 10.8705848647504 10.7704964644396 10.0395385473797 11.0430561718146 10.5539062000928 10.7663852519379 10.7614656079825 0.122740305802504 0.120219728076214 0.129659911010509 0.126596522740466 0.120125601447905 0.129538011843668 0.118402651712298 0.121649075280386 0.130163763142769 0.122093697956096 0.118402651712298 0.118402651712298 0.122195511031534 0.130116043426119 0.129674143106117 0.118402651712298 0.128965815483575 0.124135361499751 0.123718380761834 4 4 + 8011556 8012533 8011938.727 8011420 8012776 + gene protein_coding_gene FALSE TRUE AT4G13830.1|AT4G13830.2 J20 (DNAJ-LIKE 20); heat shock protein binding DnaJ-like protein (J20); nuclear gene Identical to Chaperone protein dnaJ 20, chloroplast precursor (AtJ20) (AtDjC20) (ATJ20) [Arabidopsis Thaliana] (GB:Q9SDN0;GB:Q9SVN0); similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein isoform [Solanum phureja] (GB:ABI34703.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0438494393038966 -0.460742484672696 0.654055237794264 1 -0.503735185371545 21.5875954934418 -0.0438494393038966 0.0823256129563838
AT2G44630_at 1.43491808053460 1.55633592756678 1.72394496579039 1.76518253013326 1.22703212980713 1.44007704734394 1.23617092292517 1.35100201522976 1.18653116629781 1.75072981800394 1.47095049364761 1.28796977998916 1.57846743294243 1.42680205581787 1.55278085923852 1.70800093303939 1.26043691329615 1.65663792061059 1.73712800832464 0.182270882460847 0.182835032234928 0.183311026604835 0.195255316776521 0.183978774010665 0.180827641099463 0.182531562211695 0.185709769604798 0.191468199322310 0.194826688836927 0.186358202876794 0.187305458711629 0.188034877998835 0.185408591610829 0.187709615994145 0.184095614553197 0.189223278749522 0.193300825422007 0.187941239467148 2 2 - 18422919 18423474 18423170.636 18422771 18424059 - gene protein_coding_gene FALSE TRUE AT2G44630.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44700.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.0395392830342592 0.459884476108232 0.654651875646744 1 -0.504127005790755 2.99227568380713 0.0395392830342592 0.047398388844982
AT4G29360_at 1.47239555740744 1.36234838929374 1.23026758162083 0.877522123239511 1.06227674445885 1.26260260638918 1.50344894422142 1.43013588168438 1.39250189763288 1.51123233536981 1.90195238321154 2.05821814968615 1.47776617182649 1.65128427804626 2.35249331237856 1.74118064868506 1.52655571183908 1.44767355614148 1.65882235110160 0.186565358951636 0.166647311558173 0.168325706913406 0.166716364631904 0.171212496247537 0.178584175180887 0.168475808642749 0.170815214030047 0.179167370820692 0.170314598242866 0.174032608196209 0.168775816690686 0.170787210971443 0.170218612605427 0.175428569733193 0.173135256031299 0.175160087591263 0.176810914846568 0.169814593773692 4 4|0 -|/ 14452045 14452536 14452225.3 14451419 14453869 - gene protein_coding_gene FALSE TRUE AT4G29360.1|AT4G29360.2 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 12 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 12) ((1->3)-beta-glucanase 12) (Beta-1,3-endoglucanase 12) (Beta-1,3-glucanase 12) [Arabidopsis Thaliana] (GB:Q8VYE5;GB:Q8L9M3;GB:Q9M0E7); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G56590.1); similar to beta-1,3-glucanase [Medicago sativa] (GB:ABD91576.1); similar to beta-1,3-glucanase [Medicago sativa] (GB:ABD91577.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.0425632987246276 -0.459767760065828 0.65473305658035 1 -0.504180251522046 2.92037108912855 -0.0425632987246276 0.0738367679504338
AT3G29370_at 3.09580205772943 3.16488974963333 3.03601557237631 3.12254452376320 3.07500369060267 2.86985439834617 2.94054488588367 3.06607228273242 3.75910575153905 3.37819875224918 3.53363093635876 3.75082400259201 3.71044648854305 3.5056896831421 3.7009236841212 3.57233337876511 3.31282896501774 3.71890988838666 3.30588538201711 0.166501672542234 0.173569938644957 0.167326708739833 0.168336598945921 0.169259692487021 0.167355795697193 0.171423619096174 0.172359540923968 0.184519791006034 0.169915058525369 0.176598321441822 0.16694271131897 0.176994804233946 0.166501672542234 0.171929838523908 0.169813019055774 0.174929027548496 0.170021960774631 0.178639018509751 3 3 + 11279891 11280149 11280025.909 11279826 11280345 + gene protein_coding_gene FALSE TRUE AT3G29370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39240.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 0.0393311926873799 0.459147203592583 0.655164758135287 1 -0.504463131030227 6.58722173195054 0.0393311926873799 0.0458198713046358
AT2G13150_at 2.08884633887527 1.99615585820334 1.99396946408838 2.29401239183047 2.20012789019562 2.16896189214270 1.96351928646411 2.20859493840678 2.64241098689869 2.82596824399259 3.03328263413667 2.28720159383997 2.45309514200157 2.68958828177983 2.13046924991924 2.71944141048139 2.51957327201906 2.97007754757451 2.88383702779451 0.193054730741500 0.189887156942185 0.199455433842562 0.191895467594518 0.19988471315416 0.188195409525083 0.200575092225140 0.192529340019821 0.201496283123757 0.188110127634309 0.205140414848332 0.191126170010435 0.194598933481497 0.201794557219594 0.197702599582246 0.197516336361480 0.192239829815893 0.200293238982239 0.198041189879698 2 2|0 +|/ 5444347 5445434 5444647.7 5444138 5445541 + gene protein_coding_gene FALSE TRUE AT2G13150.1 transcription factor similar to UNE4 (unfertilized embryo sac 4), transcription factor [Arabidopsis thaliana] (TAIR:AT2G12940.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE79946.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.041871070341321 -0.458939690691464 0.655309147718741 1 -0.504557643635641 4.80648012137465 -0.041871070341321 0.0691462595492683
AT1G69010_at 7.56494773268012 7.75415475963472 7.79292424665319 7.8740866345557 8.19011382514801 8.05306631238506 8.1735961765711 7.79668355754036 7.96450829988973 7.37523570578569 7.8630754448444 7.68997458025903 7.68173585483025 7.46353923537186 7.82212547424018 7.5908973535054 7.4703777981333 7.43132655713363 7.74756679678605 0.121060951099573 0.113411837259266 0.114648528234589 0.114257660977956 0.116004801422812 0.117759483093570 0.116289620246445 0.122471755389139 0.131827534567734 0.122491656646181 0.117890132706806 0.126907549058473 0.113420937250607 0.117476271920154 0.11379186097417 0.122453702626991 0.114329500580809 0.123677961286080 0.114902103084709 1 1 + 25946504 25947047 25946726.273 25945338 25947499 + gene protein_coding_gene FALSE TRUE AT1G69010.1 BIM2 (BES1-INTERACTING MYC-LIKE PROTEIN 2); DNA binding / transcription factor Identical to Putative transcription factor BIM2 (BES1-interacting Myc-like protein 2) (Transcription factor EN 125) (Basic helix-loop-helix protein 102) (bHLH 102) (AtbHLH102) (BIM2) [Arabidopsis Thaliana] (GB:Q9CAA4;GB:Q8LC47;GB:Q8RXV7); similar to BIM1 (BES1-interacting Myc-like protein 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G08130.1); similar to Os08g0490000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062109.1); similar to Putative bHLH family protein [Brassica oleracea] (GB:AAV25873.1); similar to Os09g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063459.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0430317339407551 0.458628664745417 0.655525590313342 1 -0.504699224935940 15.5611475580345 0.0430317339407551 0.0780151797642154
AT3G19085_at 0.783926334996845 0.744890400516157 0.876436234921194 0.673950621020205 0.91413668869058 1.17155808990164 0.3803951451067 0.961309974880376 0.530494341251068 0.664558695437901 0.404316905912192 0.210168948467019 0.0792078220242685 0.490722272710147 0.638360906406474 0.585582965201752 0.764259995110648 0.982616760661401 0.64286545454793 0.195744026378262 0.198302724890051 0.211239348310281 0.202826251079986 0.194139180425726 0.199194429054740 0.202124137998714 0.197846897534562 0.198534418276869 0.192338013917466 0.192181038577016 0.203067251417929 0.202333297718275 0.197938233188448 0.196972803820604 0.192181038577016 0.200877902787899 0.194553853941924 0.192181038577016 3 3|0 +|/ 6599656 6600329 6599907.5 6599595 6600590 + gene protein_coding_gene FALSE TRUE AT3G19085.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G26030.3); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain FBD; (InterPro:IPR013596) 0.0490775098705784 0.458069790271859 0.65591459351118 1 -0.504953397337025 1.37934747082456 0.0490775098705784 0.115604148126605
AT1G49250_at 1.4661887271114 1.06484565305156 1.29122248854329 1.51346411732437 0.94005532211396 1.26498785801732 1.32745153884101 1.26081118011656 1.44049145702064 0.941020885672863 1.17339308201343 0.822658380142263 1.39364809269584 0.771803721191198 1.40717603762262 1.20041961471071 1.06482043598226 1.08192941249172 1.15578608371696 0.202968925365626 0.207392913269921 0.200675756420311 0.208907643757759 0.198255688628011 0.193440081303921 0.195957327045992 0.210754295080459 0.199774945627947 0.198051248990454 0.206474031432409 0.199742076724417 0.210443917647122 0.198223010030272 0.192753937596145 0.19395314968248 0.207599639435153 0.212472293743819 0.204579029357242 1 1|0 +|/ 18226873 18227696 18227301 18224201 18227924 + gene protein_coding_gene FALSE TRUE AT1G49250.1 ATP dependent DNA ligase family protein similar to ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1), ATP binding / DNA ligase (ATP) [Arabidopsis thaliana] (TAIR:AT1G08130.1); similar to Os10g0489200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064917.1); similar to putative DNA ligase [Oryza sativa] (GB:AAL31067.1); similar to putative DNA ligase [Trifolium pratense] (GB:BAE71211.1); contains InterPro domain ATP dependent DNA ligase, central; (InterPro:IPR012310); contains InterPro domain ATP-dependent DNA ligase; (InterPro:IPR000977); contains InterPro domain ATP dependent DNA ligase, C-terminal; (InterPro:IPR012309); contains InterPro domain DNA ligase, N-terminal; (InterPro:IPR012308) -0.0460051033221506 -0.457894721280876 0.656036471801012 1 -0.505032956395623 2.41291864692814 -0.0460051033221506 0.0979693762210661
AT2G17000_at 0.536078900701192 0.606681306124788 0.804688289143152 0.977075653194104 0.487565197237998 0.88065322169853 0.75145950873241 0.68551627413835 0.741214056475201 1.17467109152579 0.955108852936545 0.52204897688468 0.611570887111525 0.664817467417008 0.625814595835142 0.230791489682414 0.876994898372288 0.9644508813816 0.812255648630103 0.192468145380615 0.190872637897372 0.193311761640315 0.193533026399920 0.191518900396465 0.188242692550464 0.1934287349362 0.190990037315063 0.193013642360730 0.196827043383823 0.188597941578786 0.192828491701219 0.19510171409309 0.188242692550464 0.189458893688889 0.188242692550464 0.191455418393528 0.192993002899371 0.196611043527777 2 2 - 7396329 7397024 7396618.909 7395975 7399187 - gene protein_coding_gene FALSE TRUE AT2G17000.1 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14810.1); similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G53470.1); similar to mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G78610.1); similar to OSJNBa0084K11.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE01848.2); similar to MscS Mechanosensitive ion channel [Medicago truncatula] (GB:ABE89426.1); similar to Os02g0668000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047683.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain MscS Mechanosensitive ion channel; (InterPro:IPR006685) -0.0426844582233932 -0.457701247160078 0.656171175418846 1 -0.505120845615175 1.51162980474449 -0.0426844582233932 0.076137917847917
AT3G06840_at 1.34767018560883 1.29853151895127 1.09788651736607 1.20007347136658 0.644286957685028 1.22620927991242 0.661175504496732 1.18574741697472 1.32092713668905 0.725964647401708 1.43223369749515 1.84819505122565 0.755512093343332 1.12634932710932 1.67195481329323 1.13084158779759 0.873349354223057 1.18957965461356 1.15167328298043 0.197145148074021 0.196044638320159 0.208360168884098 0.194374880178176 0.194173657766550 0.196070086999814 0.196654448217443 0.203664044839001 0.192880247766103 0.194676776177270 0.193981948750213 0.201565263371025 0.195159470118039 0.194553943386725 0.197838312816172 0.198401019850718 0.193503292103075 0.196946058765032 0.202471982674245 3 3 + 2156964 2157541 2157341.091 2156868 2157856 + gene protein_coding_gene FALSE TRUE AT3G06840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49170.1) 0.0530732458859267 0.457372693287466 0.656399955676921 1 -0.505270015679607 2.24254275808421 0.0530732458859267 0.136993952495929
AT3G03130_at 2.09667987319044 1.69439922520324 1.7569577999368 2.04978215150711 1.6543762287622 1.77854436315037 1.71407380442991 1.86817599039366 1.89839902464934 1.64687101341080 1.74674379064505 2.34857254659947 1.50801458251724 1.72496068927487 1.96121467327697 1.78012455125355 2.11978528200894 1.74971608250189 1.68606432047781 0.195319788142770 0.19811848742635 0.193962591481020 0.193664924067736 0.200735671196703 0.196364945695499 0.192531961281741 0.195958296505571 0.208877524033931 0.197371536041282 0.196513081250207 0.192531961281741 0.211224472512023 0.195236636463473 0.198943983024342 0.192531961281741 0.200264324884104 0.205342508183171 0.202323800893769 3 3 - 721448 722000 721770.545 721298 723650 - gene protein_coding_gene FALSE TRUE AT3G03130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17160.1); similar to hypothetical protein MtrDRAFT_AC144806g2v1 [Medicago truncatula] (GB:ABE91887.1) 0.0450981588909519 0.457363754925496 0.656406180196101 1 -0.505274072439591 3.63220850170792 0.0450981588909519 0.0926676667957716
AT4G25030_at 9.01821264570714 9.11263351024861 8.87488268639215 9.0383802130597 8.39448845986899 8.37718574060134 8.21175575651673 8.39001469788947 8.19660052754414 8.03470220384716 8.27884030988952 8.6327542775394 7.6879423764744 7.86308869003931 8.23997396196907 7.46249739030609 7.5022815311993 8.61937403875347 7.60594963992383 0.178351217784541 0.170838516558114 0.178969303083467 0.173118069469591 0.174142527436565 0.183512742122044 0.168859537231981 0.174139536590965 0.184652883079859 0.183059653481138 0.170223591331348 0.173562953653778 0.184492989681124 0.176624137238205 0.184307306213911 0.179856346060083 0.186871421832031 0.189568129302909 0.184855379641259 4 4 + 12866086 12866598 12866290.273 12864624 12866837 + gene protein_coding_gene FALSE TRUE AT4G25030.1|AT4G25030.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45410.3); similar to Os07g0159500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058932.1); similar to Os10g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065517.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67910.1) 0.0390867019865002 0.457110358889256 0.656582652109994 1 -0.505389046976413 16.6679916450154 0.0390867019865002 0.0450349203149853
AT1G71410_at 7.98126361634476 7.63605804991989 6.99196226336677 7.24986424676123 7.8697043179581 7.78331585184684 7.10658687450434 6.99741846036232 7.61116135967636 7.02341445518157 7.23405864998432 7.56390554379136 6.9841791056661 7.61544422815105 7.64795914773841 7.18744549065558 7.01574304593577 7.06319765705152 7.10500136225745 0.153205346784991 0.149213955674566 0.163787407979576 0.158485069799921 0.162090274817050 0.156684068698222 0.170542130420951 0.157892153463670 0.154183384685791 0.160001078654698 0.150478691539237 0.151149787060742 0.160000732110991 0.150037208317741 0.153642016950096 0.153543073699428 0.157099712716593 0.159324139007558 0.149773373655099 1 1 - 26916762 26917295 26917011.091 26916388 26921374 - gene protein_coding_gene FALSE TRUE AT1G71410.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G22870.1); similar to protein kinase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61275.1); similar to Os01g0616100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043575.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain HEAT; (InterPro:IPR000357) 0.0429229013085231 0.456946390241738 0.656696856021401 1 -0.505463412635616 14.7197803772965 0.0429229013085231 0.0783654931320074
AT3G52160_at 0.491008031772933 1.37607242411133 1.07661156705741 1.20012421479360 0.732791955432779 0.933864108529405 1.01518409404084 0.894539506324995 0.654082614745602 0.929080488594772 0.603070736698225 0.945768574304075 0.816070884394201 0.616410969163190 0.75744198244723 1.08909985536032 0.574184053160799 0.531805003901233 0.420686247822718 0.202039736057877 0.204544507965893 0.204992287988845 0.203291681706519 0.201594215601949 0.203556704844284 0.200369839230642 0.201341069890029 0.202757014569753 0.211236239077253 0.204807758447769 0.202894859993361 0.210249257269191 0.200380783301045 0.200516052053419 0.201453237855257 0.206057392826026 0.214829747530718 0.207347548790621 3 3 - 19356124 19356685 19356432.636 19355950 19357593 - gene protein_coding_gene FALSE TRUE AT3G52160.1 beta-ketoacyl-CoA synthase family protein Identical to 3-ketoacyl-CoA synthase 15 (EC 2.3.1.-) (KCS-15) (Very-long-chain fatty acid condensing enzyme 15) (VLCFA condensing enzyme 15) (KCS15) [Arabidopsis Thaliana] (GB:Q9SUY9;GB:Q8LFQ2); similar to FDH (FIDDLEHEAD), acyltransferase [Arabidopsis thaliana] (TAIR:AT2G26250.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to fiddlehead-like protein [Gossypium hirsutum] (GB:AAL67993.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392) 0.0577143355492022 0.45679669598519 0.656801125846623 1 -0.505531281991297 1.66986513333276 0.0577143355492022 0.159884105327517
AT4G24040_at 7.93367919415 8.15125456011948 6.27617509651684 6.32007843353743 7.940090033225 7.38750673196602 5.12982415005135 5.05838347790684 7.6075180891493 5.30637385078892 5.81624518542466 6.17797064797412 6.59527334485101 6.47781043276012 5.11887618678012 5.85291222258841 4.93517050159981 6.1580171051022 5.71767825996925 0.211159780827384 0.214698819678206 0.216657617448081 0.208913354214985 0.213207839790492 0.214513625177108 0.209877202214372 0.211427368256787 0.216198648670543 0.214657752266882 0.205481537628323 0.20490435042222 0.213981371060967 0.20762608310365 0.211934891540817 0.20490435042222 0.211403846068222 0.213006145684242 0.20490435042222 4 4|0 +|/ 12490195 12491042 12490560.5 12488193 12491207 + gene protein_coding_gene FALSE TRUE AT4G24040.1 ATTRE1 (TREHALASE 1); trehalase Encodes a trehalase, member of Glycoside Hydrolase Family 37. similar to trehalase 1 GMTRE1 [Glycine max] (GB:AAD22970.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside hydrolase, family 37; (InterPro:IPR001661) 0.046844140835154 0.456580949806786 0.656951417704533 1 -0.505629060856667 12.8256528863612 0.046844140835154 0.103792211536788
AT2G48100_at 7.65428470858549 7.59498307209881 7.9574648002719 7.70334249949648 8.35963873760349 7.89890315308458 7.71163904520126 7.81581933396966 7.49437044868278 7.5166837251773 7.414768921434 7.28477234792136 7.37735437741695 7.47082101679004 7.41584706407033 7.79337987042158 7.17308831527805 7.38502405029512 7.81827862486467 0.205952940479747 0.201481382485758 0.207628882624419 0.203571702945896 0.203661174194618 0.212235360987030 0.204878989237409 0.200899774084608 0.224585470063006 0.19858301098974 0.202577713699103 0.19858301098974 0.207284443203487 0.210177549181813 0.206757693789495 0.202653219111451 0.205141123380942 0.200262516791664 0.19858301098974 2 2|0 +|/ 19679085 19679869 19679495.286 19677571 19680362 + gene protein_coding_gene FALSE TRUE AT2G48100.1|AT2G48100.2|AT2G48100.3|AT2G48100.4 exonuclease family protein|exonuclease similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G40310.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16921.1); similar to Os02g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047886.1); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520)|similar to exonuclease [Arabidopsis thaliana] (TAIR:AT3G27970.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16921.1); similar to Os02g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047886.1); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) 0.0451300767644136 0.456529814455201 0.656987041643633 1 -0.505652229539105 15.3490892163031 0.0451300767644136 0.0933895131987137
AT3G56150_at 9.44585265679833 9.46678695972277 9.42777189862442 9.48994111354596 9.49150090492727 9.26482210925062 9.52686091632799 9.71402955035032 9.06303914594115 9.1576697279397 9.19659130698503 9.33525207439099 9.26257059738894 9.35231109473847 9.30530774403624 9.33566304804073 9.03318683571223 8.90320300642631 9.30443294383744 0.116508985390336 0.111946850279761 0.109982799215469 0.112950110305239 0.111486458092036 0.121912673931498 0.114139713381282 0.113971114049548 0.129169030695577 0.114522538819250 0.118606487220027 0.109530758657554 0.111080578119563 0.121867019724917 0.116226707487487 0.110545884050425 0.118606524322531 0.115630368061601 0.114073177555459 3 3 - 20844772 20845311 20845092.273 20844563 20848136 - gene protein_coding_gene FALSE TRUE AT3G56150.1 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3) member of eIF3c - eukaryotic initiation factor 3c Identical to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105) (TIF3C1) [Arabidopsis Thaliana] (GB:O49160;GB:Q9LYM6); similar to TIF3C2 (eukaryotic translation initiation factor 3 subunit C2), translation initiation factor [Arabidopsis thaliana] (TAIR:AT3G22860.1); similar to putative translation-initiation factor 3 subunit [Prunus avium] (GB:AAL13083.1); similar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) (GB:Q9XHM1); similar to Proteasome component re (GB:ABE91931.1); contains InterPro domain Eukaryotic translation initiation factor 3 subunit 8, C-terminal; (InterPro:IPR008904); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717); contains InterPro domain Eukaryotic translation initiation factor 3 subunit 8, N-terminal; (InterPro:IPR008905) -0.0397050366603391 -0.456505573055348 0.657003929961496 1 -0.505663212093947 18.6737247567123 -0.0397050366603391 0.0521232575743481
AT2G35160_at 2.15184987358137 2.15532280305919 1.96494693626697 2.17598710568071 2.04160980519752 2.09502861876614 2.37401076080669 2.36941639915099 1.9872194681927 2.43376432738837 2.56780219169862 2.54523615956327 2.18815210465622 2.18689516331531 2.46358455064184 2.20764320878717 2.21939871836992 2.24482099922799 1.75256223365200 0.230739201245952 0.233094030578693 0.239910434622153 0.238366446945757 0.240763144347499 0.234250135867349 0.236794577014493 0.236533797765389 0.238690452237208 0.230739201245952 0.233963888333729 0.238153824772663 0.233950445776202 0.232904753125509 0.234258979604428 0.231814995705611 0.239996484442091 0.230739201245952 0.232649926323807 2 2 + 14832464 14832983 14832693.273 14829903 14833241 + gene protein_coding_gene FALSE TRUE AT2G35160.1 SUVH5 (SU(VAR)3-9 HOMOLOG 5) Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Suppressor of variegation 3-9 homolog protein 5) (Su(var)3-9 homolog protein 5) (Protein SET DOMAIN GROUP 9) (SUVH5) [Arabidopsis Thaliana] (GB:O82175); similar to SUVH6 (SU(VAR)3-9 homolog 6) [Arabidopsis thaliana] (TAIR:AT2G22740.1); similar to Os09g0362900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062989.1); similar to putative histone-lysine N-methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC98666.1); similar to Os08g0400200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061753.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) 0.0384180589748946 0.456317850871712 0.657134717632412 1 -0.505748240593736 4.35891669453548 0.0384180589748946 0.0376864793841762
AT2G24640_at 3.98284819930876 4.05005058237868 3.99032074991682 4.16131012145366 4.00095513925354 3.77288615387122 3.87469711393152 4.0730211824175 3.76704247481033 3.28934297890428 3.72408630338321 3.93095630962631 3.61502981179998 3.14903142663533 3.60005085937366 3.95036501236690 3.58747791936079 3.42065162735146 3.52486970907517 0.202804664426939 0.208499717115201 0.216541696861723 0.201599248553793 0.213417691461974 0.211652819682161 0.21448984120097 0.21580079167911 0.214207159259331 0.212588351181398 0.212237310811220 0.202632067531916 0.201599248553793 0.207550159029064 0.211355403618907 0.205127104872838 0.215724681286375 0.210044409314716 0.208719104486658 2 0|2 /|- 10482766 10483248 10483006.6 10482507 10486533 - gene protein_coding_gene FALSE TRUE AT2G24640.1 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT4G31670.1); similar to putative ubiquitin-specific protease 15 [Oryza sativa (japonica cultivar-group)] (GB:BAD37420.1); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.04066743804432 0.456294159136857 0.6571512247224 1 -0.505758969346663 7.5629067618167 0.04066743804432 0.0612088801722327
AT3G47470_at 13.9635795791586 13.9760502887033 14.0706377708982 14.0028305839834 13.9983859362372 14.0476586465066 14.1075162238400 14.2362160322451 14.7236385739792 14.5929124468307 14.7360970315970 14.8450977088040 14.7760464293173 14.6923900839774 14.5182635982519 14.6750503015266 14.6583435430478 14.877496245231 14.5014130821801 0.0514494930185586 0.0508484693716432 0.0525048606179857 0.0566032223659828 0.0541514845050293 0.0538502425068393 0.0534781270050218 0.0518396250007074 0.0540674935776083 0.0506767893924271 0.0554546456020341 0.051606358165886 0.0516553652717992 0.054822337752119 0.0588414310683149 0.0512898586014763 0.0501961102262812 0.050537171120257 0.0504230286095632 3 3|0 -|/ 17504609 17505556 17505027.4 17504357 17506018 - gene protein_coding_gene FALSE TRUE AT3G47470.1 LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins. Identical to Chlorophyll a-b binding protein 4, chloroplast precursor (LHCI type III CAB-4) (LHCP) (CAB4) [Arabidopsis Thaliana] (GB:P27521); similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to chlorophyll a/b binding protein [Solanum tuberosum] (GB:CAK24966.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) 0.0376988934043743 0.456244471515336 0.657185844928826 1 -0.505781468546612 28.7145274587211 0.0376988934043743 0.0266665803707172
AT2G34020_at 0.155375792632146 0.671621104959042 0.245857388744853 0.102027680685987 0.529976169417187 0.293254739697046 0.258362942689609 0.555860335246045 0.0767397815208478 0.205925389328344 -0.0400941366739128 -0.0463601768180724 -0.124399522494794 0.0847764735244561 0.296283288285174 0.0251388223684470 0.235194638782587 0.0220537062950503 -0.174331140799599 0.196790181995218 0.204011837520481 0.196790181995218 0.203450515703262 0.198338981321399 0.198948708641733 0.196790181995218 0.198663240069780 0.199486400601406 0.203924484223026 0.203617096631243 0.198360739265742 0.204838772877716 0.202267373560274 0.198808726343556 0.196790181995218 0.19878912768424 0.204389534546075 0.207103149988117 2 2 - 14378751 14379163 14378929 14378264 14380934 - gene protein_coding_gene FALSE TRUE AT2G34020.1 calcium ion binding similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT2G34030.1); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G29020.1); similar to putative drought-induced protein RDI [Oryza sativa (japonica cultivar-group)] (GB:BAD19956.1); similar to Os02g0247800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046432.1); similar to Os01g0212400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042378.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.0485316279683448 -0.456160767251207 0.657244168376214 1 -0.505819365606716 0.39788475926323 -0.0485316279683448 0.113708627146246
AT4G16490_at 8.06371831995565 8.42541401610526 8.4625048551612 8.41048170184465 9.17860058293818 8.74781965065347 9.7150136500802 9.86432147769335 7.92196557189858 7.7271810685607 8.1275834428799 8.16313795747568 8.73482851249635 8.55800234431872 7.67402864497996 8.48197213386886 7.66980924997642 8.3464115951375 7.77940110695974 0.158829429559256 0.157197795647159 0.173842619480795 0.157107874840232 0.160358822714251 0.159339516351898 0.163587014976476 0.157918818735983 0.167945195072219 0.157400082222823 0.157855733994628 0.156912599003264 0.157178580418719 0.1589630201155 0.161254231026055 0.163601124537665 0.177699279149009 0.156015373208299 0.157524899674020 4 4 - 9294811 9295316 9295064.909 9293565 9295648 - gene protein_coding_gene FALSE TRUE AT4G16490.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23140.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88245.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0463453255130490 0.456110660199037 0.657279083103869 1 -0.505842048354355 16.872978107278 0.0463453255130490 0.101114171715781
AT2G02090_at 7.98871922906183 8.09780337839238 8.35177220831304 8.15511276649032 8.38070027043521 7.87488724033581 7.96461050435662 7.71696245433263 7.0627509834229 7.04870096470218 6.68587112424634 7.29533090447488 6.99597590744203 7.30369632459736 6.60717439660868 7.34791034881896 7.08028145911654 7.0051341955051 7.47302564641299 0.176131601813 0.175656367240587 0.173585641843452 0.185208012959402 0.181700860734072 0.179906904590763 0.178851886751130 0.175784099080856 0.220178319178654 0.175247693331198 0.181301870527397 0.173369518065689 0.182362274699190 0.183509201632334 0.185565356153498 0.179974975431597 0.199332388204118 0.192322920656781 0.172782479746261 2 2|0 +|/ 525995 526818 526424.9 523283 527011 + gene protein_coding_gene FALSE TRUE AT2G02090.1 CHR19/ETL1 (chromatin remodeling 19); ATP binding / DNA binding / helicase similar to CHR11 (CHROMATIN-REMODELING PROTEIN 11), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT3G06400.1); similar to Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) (ISS) [Ostreococcus tauri] (GB:CAL53914.1); similar to OSJNBa0005N02.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02069.2); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0469700988064738 0.455897763083348 0.657427439914696 1 -0.505938397175454 15.1838198551884 0.0469700988064738 0.104944586774432
AT4G21810_at 8.46108135830726 8.98559866179747 8.75374169954152 8.58199578121434 9.77053081272502 8.9913439564612 8.57806682075327 8.8022589312046 8.54587347831365 8.68708945745177 8.78216885040087 8.3707174156478 8.90662216667454 8.8642026423871 8.01585044131968 8.69419215327608 8.10244401480106 8.39299227704332 8.9102810497098 0.184012479636421 0.181375383136033 0.192091369888041 0.201323680268704 0.191822434186912 0.189158029790973 0.185100419103004 0.183766995130472 0.210590327557996 0.180449461908897 0.179891858915163 0.180931495410620 0.191135403880862 0.184467214922347 0.194405453681709 0.184077547829535 0.192154858644497 0.191060611355564 0.182614846996707 4 4|0 -|/ 11575432 11576597 11575846.3 11575108 11577207 - gene protein_coding_gene FALSE TRUE AT4G21810.1 Der1-like family protein / degradation in the ER-like family protein Identical to Derlin-2.1 (AtDerlin2-1) (DER2.1) [Arabidopsis Thaliana] (GB:Q8VZ96;GB:O49704;GB:Q9M0L7;GB:Q9SVR6); similar to Der1-like family protein / degradation in the ER-like family protein [Arabidopsis thaliana] (TAIR:AT4G04860.1); similar to Os03g0852200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051921.1); similar to Derlin-2.2 (ZmDerlin2-2) (GB:Q4G2J3); contains InterPro domain Der1-like; (InterPro:IPR007599) 0.0596928514193011 0.455724081933255 0.65754848060797 1 -0.506016966423960 17.4808589562600 0.0596928514193011 0.169735603196289
AT3G27820_at 10.6072461052995 10.8647637959696 11.1739657617854 11.1940864576288 11.1982190396156 10.8714712890704 11.4878309221399 11.3753809845630 10.7811917870031 11.2269957012512 10.9749972705991 10.6190648313944 10.9678086663383 11.0365740183075 10.4014568352264 11.1857322918717 11.0755201166633 10.8218359640458 10.9785675994770 0.117083742645912 0.109741652885279 0.113013720415861 0.114363597653080 0.109284066370595 0.112023175700768 0.119324322962640 0.110969693938349 0.121289489312281 0.110120678040596 0.112704303186681 0.108150367219034 0.116095761445157 0.113122956292828 0.112787533884754 0.109770328586902 0.116560179191309 0.107873856834008 0.110549150923342 3 3 + 10318577 10319075 10318811.909 10316351 10319293 + gene protein_coding_gene FALSE TRUE AT3G27820.1 ATMDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH) Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 2 (EC 1.6.5.4) (MDAR 2) [Arabidopsis Thaliana] (GB:Q9LK94); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] (TAIR:AT3G52880.1); similar to Os02g0707000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047874.1); similar to cytosolic monodehydroascorbate reductase [Oryza sativa (japonica cultivar-group)] (GB:BAA77214.1); similar to Os02g0707100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047875.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.0422905474529303 -0.455627828183287 0.657615565542018 1 -0.506060496971444 22.0370999337838 -0.0422905474529303 0.0746604600651411
AT1G52870_at 11.8377931908089 11.9952304500074 12.2783769059605 12.2533805076819 12.3019341588903 11.9308715039506 12.5733519194994 12.4968997677131 12.2054568097632 12.296313073567 12.4279682216493 12.1135451784156 12.2429806039155 12.4653900555910 11.8586758322362 12.7655887474335 12.4172202322555 12.2493137465464 12.0960129065972 0.0830437716973615 0.0808155581150656 0.0816182852074058 0.0813310643923264 0.0811104479486196 0.0818875009983411 0.0840181965523794 0.0823633761688368 0.0873494138268708 0.0810009450826275 0.0808155581150656 0.0808155581150656 0.0831101537396663 0.0825354893150815 0.0861130818991864 0.0808155581150656 0.0876243813475383 0.0830239501190077 0.0818823136397552 1 1 + 19689895 19690952 19690541.727 19689415 19691575 + gene protein_coding_gene FALSE TRUE AT1G52870.1|AT1G52870.2 peroxisomal membrane protein-related similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT4G03410.2); similar to peroxisomal membrane protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97329.1); similar to Os03g0583800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050563.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248)|similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT4G03410.1); similar to peroxisomal membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD34004.1); similar to Os03g0583800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050563.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.0418231671966023 0.455623107834464 0.657618855513526 1 -0.506062631511841 24.4669029291796 0.0418231671966023 0.0711302532297078
AT1G02680_at 5.03092348864987 5.67647228345779 4.94347211253267 5.35692900201506 5.82826350500136 4.83038554983325 4.77621197978554 5.18381505101901 4.9379745099255 4.65610791406406 4.63502631437039 4.95306895106105 4.4022739239945 5.13705914920781 4.25946120182338 5.08901839780323 4.44752576380014 4.25630438727889 5.00634442221581 0.249988059811739 0.243115405233685 0.248295536834941 0.245822546066977 0.239690627533949 0.270691754933169 0.243567875679203 0.240908241271471 0.255572232899704 0.243132069096207 0.241970319040009 0.242061208502529 0.252494463635937 0.252914586269148 0.242019206024346 0.239690627533949 0.250908007991911 0.246921705450911 0.243637526351400 1 1|0 +|/ 581106 581872 581506.3 580625 582310 + gene protein_coding_gene FALSE TRUE AT1G02680.1 transcription initiation factor IID (TFIID) 18 kDa subunit (TAFII-18) family protein similar to putative TAF13 [Oryza sativa (japonica cultivar-group)] (GB:BAD53935.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription initiation factor IID, 18 kDa subunit; (InterPro:IPR003195) -0.0732174229750826 -0.455589535415689 0.657642254914233 1 -0.506077812337762 9.9604472264881 -0.0732174229750826 0.228902362821492
AT3G24560_at 2.79568834615881 2.31370308294689 2.90443521578985 2.61314183057130 2.91491269800819 3.45943926823134 3.18919102531542 3.26564141557308 3.01835244963335 3.13776832148183 2.83071522450017 2.98414752362233 2.62124157155388 2.77626906955966 2.38217930119565 3.31501943424992 2.96491899825083 2.65454885873919 2.8540628741724 0.228453346845926 0.227814432895982 0.222090148614748 0.229180408134723 0.22556165145419 0.237134474479177 0.228339426913012 0.227594988354879 0.222680526119254 0.221327128529721 0.226419604373000 0.224265974919384 0.233446832130804 0.238651824786412 0.230009109984036 0.228765038763670 0.231347686906785 0.231259195079573 0.222931020300533 3 3|0 +|/ 8965873 8966466 8966160.4 8963767 8966623 + gene protein_coding_gene FALSE TRUE AT3G24560.1|AT3G24560.2|AT3G24560.3 RSY3 (RASPBERRY 3)|RSY3 (RASPBERRY 3); ATP binding / ligase, forming carbon-nitrogen bonds novel gene involved in embryogenesis similar to putative PP-loop superfamily ATPase [uncultured organism] (GB:CAK32581.1); similar to Os02g0266500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046506.1); contains InterPro domain PP-loop; (InterPro:IPR011063)|similar to putative PP-loop superfamily ATPase [uncultured organism] (GB:CAK32581.1); similar to Os02g0266500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046506.1); contains InterPro domain tRNA(Ile)-lysidine synthetase, N-terminal; (InterPro:IPR012795); contains InterPro domain PP-loop; (InterPro:IPR011063) -0.0526691325343103 -0.455222782159399 0.657897900622627 1 -0.50624358143494 5.84178138339343 -0.0526691325343103 0.136210124113822
AT3G50820_at 12.5502362978070 12.6306577502062 12.6373073446206 12.6978783496390 12.6021750145267 12.6657966740532 13.1062449963698 13.1955519051705 13.2594185372172 13.2497940055407 13.4532568945101 13.5286458124546 13.2756481934054 13.2852796092884 13.4738409489509 13.5176998313191 13.2677239408754 13.4722658051085 13.2843951488525 0.0550100115966079 0.0538221732117604 0.0562716014102143 0.0538466404667581 0.0549028199192676 0.0562242533680713 0.0561758505931302 0.0544692352377575 0.0613059654522273 0.0536288933461758 0.0536288933461758 0.0536288933461758 0.054700281782257 0.0554473804432863 0.055767136927654 0.0536288933461758 0.0578418716960847 0.0559155277618285 0.0537715563494508 3 3 - 18902126 18902606 18902323.273 18901857 18903407 - gene protein_coding_gene FALSE TRUE AT3G50820.1 PSBO-2/PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2